1020 143 0 0 chrX 1 148 -162599782 + AluSp/q SINE Alu 156 302 -11 1323 193 97 65 chrX 402 518 -162599412 + MER65C LTR ERV1 2 113 -348 2015 128 14 0 chrX 518 800 -162599130 + AluSx SINE Alu 1 286 -26 1323 193 97 65 chrX 800 1114 -162598816 + MER65C LTR ERV1 113 446 -15 2054 125 18 0 chrX 1203 1505 -162598425 - AluSg SINE Alu 0 307 1 306 50 0 0 chrX 1531 1571 -162598359 + (TG)n Simple_repeat Simple_repeat 2 41 0 2473 168 46 26 chrX 1662 2094 -162597836 - Tigger3(Golem) DNA MER2_type -10 3019 2574 2126 134 0 0 chrX 2094 2392 -162597538 - AluSx SINE Alu -14 298 1 2473 168 46 26 chrX 2392 2458 -162597472 - Tigger3(Golem) DNA MER2_type -455 2574 2511 1464 193 64 10 chrX 2458 2754 -162597176 + AluJb SINE Alu 1 312 0 1895 137 20 13 chrX 2846 3145 -162596785 - AluSx SINE Alu -11 301 1 1389 332 88 36 chrX 3743 4010 -162595920 + MER4-int LTR ERV1 5633 5885 -1237 1997 140 0 10 chrX 4010 4336 -162595594 + AluSc SINE Alu 1 309 0 1389 332 88 36 chrX 4336 5067 -162594863 + MER4-int LTR ERV1 5885 6683 -439 257 210 0 32 chrX 5281 5343 -162594587 + MER4-int LTR ERV1 4185 4244 -2354 537 287 71 35 chrX 5389 5643 -162594287 + LTR47B LTR ERVL 51 313 -130 518 126 0 0 chrX 5646 5733 -162594197 + AluSp/q SINE Alu 222 308 -5 471 258 39 7 chrX 5738 5893 -162594037 + MER39 LTR ERV1 537 696 -11 190 253 0 80 chrX 9263 9338 -162590592 - L2 LINE L2 -1 3271 3203 1237 206 11 11 chrX 10603 10870 -162589060 - L1MB5 LINE L1 -77 6097 5831 349 234 156 44 chrX 13444 13649 -162586281 + LTR37A LTR ERV1 197 424 -2 288 228 89 41 chrX 14221 14289 -162585641 - L1ME3 LINE L1 -166 5996 5933 2218 139 94 54 chrX 14289 14755 -162585175 + MER31A LTR ERV1 1 485 0 288 228 89 41 chrX 14755 14809 -162585121 - L1ME3 LINE L1 -229 5933 5868 953 206 46 27 chrX 14850 15112 -162584818 - L1MA8 LINE L1 -65 6226 5960 454 245 20 0 chrX 15112 15214 -162584716 - U6 snRNA snRNA 0 107 4 367 299 7 28 chrX 15243 15387 -162584543 - L1ME3 LINE L1 -403 5767 5627 275 263 59 51 chrX 15581 15699 -162584231 + MIR SINE MIR 20 138 -124 2456 87 3 0 chrX 15821 16131 -162583799 + AluY SINE Alu 1 311 0 22 0 0 0 chrX 16438 16460 -162583470 + AT_rich Low_complexity Low_complexity 1 22 0 372 259 121 50 chrX 16511 16687 -162583243 - L1ME2 LINE L1 -37 6127 5928 2373 78 3 0 chrX 16687 16983 -162582947 - AluY SINE Alu -14 297 1 372 259 121 50 chrX 16983 17045 -162582885 - L1ME2 LINE L1 -236 5928 5872 948 260 71 0 chrX 17053 17361 -162582569 - L1ME2 LINE L1 -370 5794 5465 564 260 50 10 chrX 17724 17924 -162582006 + MER67C LTR ERV1 34 241 -469 4469 101 23 14 chrX 17948 18180 -162581750 - PABL_A LTR ERV1 -2 658 430 2521 56 0 3 chrX 18180 18485 -162581445 - AluY SINE Alu -7 304 1 4469 101 23 14 chrX 18485 18904 -162581026 - PABL_A LTR ERV1 -230 430 1 652 111 0 10 chrX 18942 19041 -162580889 + MER4A LTR ERV1 1 98 -566 444 189 7 45 chrX 19041 19189 -162580741 + MER4A LTR ERV1 261 461 -203 2055 112 35 0 chrX 19229 19515 -162580415 - AluSg SINE Alu -14 296 1 24 32 0 0 chrX 19523 19554 -162580376 + AT_rich Low_complexity Low_complexity 1 31 0 227 30 0 30 chrX 19748 19781 -162580149 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1048 181 4 75 chrX 19929 20017 -162579913 - MER2 DNA MER2_type -135 210 117 2231 120 0 0 chrX 20017 20317 -162579613 + AluSx SINE Alu 1 300 -12 1048 181 4 75 chrX 20317 20454 -162579476 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 20554 20575 -162579355 + (TTA)n Simple_repeat Simple_repeat 2 22 0 875 156 28 0 chrX 20615 20756 -162579174 - AluSg/x SINE Alu -15 297 153 274 254 67 22 chrX 20757 20891 -162579039 - L1ME2 LINE L1 -1031 5115 4976 1994 122 42 7 chrX 20898 21186 -162578744 + AluSx SINE Alu 1 298 -14 1994 142 13 10 chrX 21390 21701 -162578229 - AluJo SINE Alu 0 312 1 1161 39 0 0 chrX 22054 22183 -162577747 - AluY SINE Alu -182 129 1 1131 164 0 11 chrX 22340 22529 -162577401 - AluJb SINE Alu -3 309 123 1577 63 5 15 chrX 23091 23297 -162576633 - AluYa5 SINE Alu -9 302 99 3993 74 18 7 chrX 23297 23849 -162576081 + LTR6B LTR ERV1 1 558 0 904 40 0 0 chrX 23850 23951 -162575979 - AluYa5 SINE Alu -210 101 1 2428 106 0 0 chrX 23967 24279 -162575651 - AluSx SINE Alu 0 312 1 3776 194 19 4 chrX 24312 25065 -162574865 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 25622 25650 -162574280 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1116 144 0 2 chrX 26109 26469 -162573461 + (TTCC)n Simple_repeat Simple_repeat 1 540 0 653 220 9 9 chrX 26474 26832 -162573098 + CT-rich Low_complexity Low_complexity 1 358 0 252 188 25 12 chrX 26856 26936 -162572994 + CT-rich Low_complexity Low_complexity 4 84 0 2628 206 31 4 chrX 27258 27803 -162572127 - L1MB5 LINE L1 0 6174 5615 1620 190 3 31 chrX 28837 29158 -162570772 + AluJo SINE Alu 1 312 0 1370 188 22 4 chrX 29588 29860 -162570070 - L1MB5 LINE L1 -89 6085 5809 463 247 159 12 chrX 30006 30176 -162569754 + MLT1J2 LTR MaLR 256 450 0 2253 124 0 0 chrX 31199 31505 -162568425 - AluSx SINE Alu -6 306 1 3191 142 18 63 chrX 32873 33126 -162566804 + MER39B LTR ERV1 2 265 -388 2582 53 0 3 chrX 33126 33428 -162566502 + AluY SINE Alu 1 301 -10 3191 142 18 63 chrX 33428 33546 -162566384 + MER39B LTR ERV1 265 387 -266 2410 80 0 0 chrX 33546 33834 -162566096 + AluSc SINE Alu 1 288 -21 3191 142 18 63 chrX 33834 34115 -162565815 + MER39B LTR ERV1 387 626 -27 324 70 0 0 chrX 34568 34611 -162565319 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1892 150 0 17 chrX 34611 34911 -162565019 - AluSg SINE Alu -15 295 1 2071 143 0 0 chrX 34911 35219 -162564711 - AluSx SINE Alu -4 308 1 3580 136 11 0 chrX 35537 36080 -162563850 - MER41A LTR ERV1 0 554 6 3351 164 46 89 chrX 36085 36665 -162563265 - LTR39 LTR ERV1 -8 775 238 1939 135 10 10 chrX 36665 36953 -162562977 + AluSx SINE Alu 1 288 -24 3351 164 46 89 chrX 36953 37182 -162562748 - LTR39 LTR ERV1 -545 238 1 285 278 21 10 chrX 37936 38033 -162561897 - MER5A DNA MER1_type -86 103 6 1276 178 9 0 chrX 38042 38272 -162561658 - MLT1B LTR MaLR -1 389 158 1131 175 5 24 chrX 38272 38509 -162561421 - MLT1B LTR MaLR 0 467 159 2175 167 8 13 chrX 38510 38899 -162561031 - MLT1B LTR MaLR 0 390 4 1956 195 4 30 chrX 38928 39222 -162560708 - MLT1B LTR MaLR 0 396 111 2283 70 33 33 chrX 39222 39524 -162560406 - AluY SINE Alu -9 302 1 1956 195 4 30 chrX 39524 39633 -162560297 - MLT1B LTR MaLR -285 111 1 1005 97 0 156 chrX 39786 39972 -162559958 - AluSg/x SINE Alu -18 292 136 773 254 46 0 chrX 40670 40867 -162559063 - MER20 DNA MER1_type 0 219 14 641 141 19 6 chrX 40883 41039 -162558891 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 298 192 39 39 chrX 41050 41154 -162558776 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 671 112 9 19 chrX 91155 91262 -162508668 + MLT1A1 LTR MaLR 260 365 0 1400 147 4 0 chrX 91262 91493 -162508437 + MLT1B LTR MaLR 158 389 -1 551 211 265 0 chrX 91494 91679 -162508251 + L1MB4 LINE L1 5906 6139 -41 1872 146 0 23 chrX 91684 91985 -162507945 - AluJo SINE Alu -15 297 4 3752 130 0 8 chrX 92588 93117 -162506813 + MER1A DNA MER1_type 3 527 0 1909 174 3 0 chrX 93274 93562 -162506368 + AluJb SINE Alu 2 290 -22 2210 121 3 0 chrX 93599 93896 -162506034 + AluSq SINE Alu 1 298 -15 905 115 0 8 chrX 93896 94026 -162505904 + AluSg/x SINE Alu 160 288 -24 258 32 0 0 chrX 94062 94093 -162505837 + (TG)n Simple_repeat Simple_repeat 1 31 0 903 136 34 20 chrX 94094 94241 -162505689 - AluSq/x SINE Alu -163 149 1 204 40 0 0 chrX 94340 94365 -162505565 + (T)n Simple_repeat Simple_repeat 1 25 0 2531 63 0 0 chrX 94390 94689 -162505241 - AluY SINE Alu -12 299 1 189 0 0 0 chrX 94720 94741 -162505189 + (A)n Simple_repeat Simple_repeat 1 21 0 2171 105 3 7 chrX 95192 95509 -162504421 - AluSx SINE Alu 0 316 1 783 126 0 77 chrX 95748 95891 -162504039 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 95897 95932 -162503998 + AT_rich Low_complexity Low_complexity 1 35 0 1505 128 8 16 chrX 95948 96198 -162503732 - L1MC1 LINE L1 0 6333 6086 235 281 45 0 chrX 96226 96315 -162503615 + L1MEc LINE L1 1262 1354 -5042 2142 144 0 0 chrX 96675 96981 -162502949 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 97053 97075 -162502855 + AT_rich Low_complexity Low_complexity 1 22 0 2358 112 49 0 chrX 97300 97352 -162502578 - THE1B LTR MaLR 0 364 316 2366 70 0 7 chrX 97352 97639 -162502291 - AluY SINE Alu -11 300 16 2358 112 49 0 chrX 97639 97933 -162501997 - THE1B LTR MaLR -48 316 1 402 336 24 24 chrX 98140 98390 -162501540 + L1MEc LINE L1 2302 2551 -3664 885 150 0 0 chrX 98397 98530 -162501400 + FLAM_C SINE Alu 1 133 0 2042 133 20 3 chrX 98889 99190 -162500740 - AluSx SINE Alu -6 306 1 369 0 0 0 chrX 99938 99979 -162499951 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 42 0 0 chrX 100461 100485 -162499445 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3532 65 5 0 chrX 100537 100982 -162498948 + L1PA10 LINE L1 5718 6164 -4 2003 134 35 15 chrX 101147 101490 -162498440 + L1PB4 LINE L1 5804 6153 -3 188 61 61 0 chrX 101734 101767 -162498163 + T-rich Low_complexity Low_complexity 2 36 0 1827 169 0 19 chrX 102024 102442 -162497488 + AluJb SINE Alu 1 412 0 367 73 36 0 chrX 102495 102550 -162497380 - Alu SINE Alu -5 297 241 319 193 23 11 chrX 102556 102644 -162497286 + CT-rich Low_complexity Low_complexity 4 92 0 1771 181 0 7 chrX 102647 102951 -162496979 - AluJb SINE Alu -10 302 1 2209 173 18 3 chrX 103012 103394 -162496536 + MLT1B LTR MaLR 3 390 0 1346 167 116 29 chrX 103475 103709 -162496221 - AluJo SINE Alu -13 299 36 5044 94 0 0 chrX 103709 104369 -162495561 + PABL_A LTR ERV1 1 660 0 1346 167 116 29 chrX 104369 104409 -162495521 - AluJo SINE Alu -276 36 1 247 264 16 48 chrX 104709 104834 -162495096 + L1ME LINE L1 5691 5811 -359 785 153 0 0 chrX 105242 105360 -162494570 + FLAM_C SINE Alu 1 118 -15 1156 203 14 22 chrX 105383 105605 -162494325 + AluJo SINE Alu 1 220 -92 290 118 0 39 chrX 105605 105656 -162494274 + AluSq/x SINE Alu 86 134 -169 32 26 0 0 chrX 105656 105695 -162494235 + AT_rich Low_complexity Low_complexity 1 39 0 978 137 27 0 chrX 105705 105888 -162494042 + L1MA4 LINE L1 6107 6294 -6 2113 117 0 0 chrX 105906 106188 -162493742 - AluSx SINE Alu -30 282 1 23 0 0 0 chrX 106195 106218 -162493712 + AT_rich Low_complexity Low_complexity 1 23 0 558 229 12 59 chrX 107121 107291 -162492639 - MER20 DNA MER1_type -42 177 16 1702 174 35 0 chrX 107363 107485 -162492445 + AluJo SINE Alu 1 117 -195 186 43 0 0 chrX 107485 107508 -162492422 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1702 174 35 0 chrX 107508 107672 -162492258 + AluJo SINE Alu 117 297 -15 28 29 0 0 chrX 107838 107873 -162492057 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 108219 108247 -162491683 + AT_rich Low_complexity Low_complexity 1 28 0 349 246 118 43 chrX 108631 108818 -162491112 + L1ME1 LINE L1 5736 5936 -230 2486 85 0 3 chrX 109572 109879 -162490051 - AluSg SINE Alu -4 306 1 2361 95 3 0 chrX 110111 110416 -162489514 - AluSp SINE Alu -7 306 1 616 155 35 113 chrX 110649 110791 -162489139 + FLAM_C SINE Alu 2 132 -11 5024 109 7 0 chrX 110815 111530 -162488400 + L1PA11 LINE L1 5445 6164 -10 2057 135 0 22 chrX 111533 111819 -162488111 + AluSx SINE Alu 1 281 -31 189 0 0 0 chrX 111819 111840 -162488090 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2057 135 0 22 chrX 111840 111872 -162488058 + AluSx SINE Alu 281 312 0 2727 28 9 0 chrX 111939 112258 -162487672 + L1PA4 LINE L1 5831 6152 -3 24 53 0 0 chrX 112258 112296 -162487634 + AT_rich Low_complexity Low_complexity 1 38 0 1958 141 3 13 chrX 112731 113030 -162486900 + AluSq SINE Alu 18 313 0 257 75 25 0 chrX 113063 113103 -162486827 + (GAA)n Simple_repeat Simple_repeat 2 42 0 262 228 0 0 chrX 113120 113177 -162486753 - MIR SINE MIR -146 116 60 1351 190 52 14 chrX 113282 113415 -162486515 + AluJo SINE Alu 3 129 -183 2160 110 14 0 chrX 113415 113705 -162486225 + AluSx SINE Alu 1 294 -18 1351 190 52 14 chrX 113705 113860 -162486070 + AluJo SINE Alu 129 302 -10 445 172 16 0 chrX 113944 114066 -162485864 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 256 100 0 40 chrX 114070 114120 -162485810 + MLT2B1 LTR ERVL 458 505 -15 581 208 32 19 chrX 114153 114307 -162485623 + L1M4 LINE L1 5071 5226 -920 550 195 140 30 chrX 114870 115034 -162484896 + MLT1C LTR MaLR 1 182 -285 546 242 73 28 chrX 115080 115258 -162484672 + MLT1C LTR MaLR 172 357 -110 1846 150 10 30 chrX 115279 115579 -162484351 + AluJb SINE Alu 1 294 -18 768 170 0 7 chrX 115678 115813 -162484117 + FRAM SINE Alu 42 175 -1 310 339 0 17 chrX 115926 116041 -162483889 - MER5A DNA MER1_type 0 189 77 813 181 0 8 chrX 116093 116226 -162483704 - FLAM_C SINE Alu -1 132 1 272 253 0 44 chrX 116344 116435 -162483495 - L1MC4 LINE L1 -13 8029 7943 2197 138 43 0 chrX 116507 116856 -162483074 - THE1B LTR MaLR 0 364 1 10878 107 36 1 chrX 116856 118382 -162481548 - THE1B-int LTR MaLR 0 1580 1 2352 133 23 0 chrX 118382 118736 -162481194 - THE1B LTR MaLR 0 364 3 882 153 0 14 chrX 118810 118954 -162480976 + FLAM_C SINE Alu 1 142 -1 493 227 169 7 chrX 118962 119116 -162480814 - L1MC4 LINE L1 -285 7757 7579 286 164 30 0 chrX 119125 119192 -162480738 - L1MB4 LINE L1 0 6180 6112 336 200 0 0 chrX 119268 119328 -162480602 - L1MB4 LINE L1 -55 6125 6066 1233 141 0 0 chrX 119337 119514 -162480416 + AluSg/x SINE Alu 134 310 0 1153 253 88 40 chrX 119567 120089 -162479841 + L1ME1 LINE L1 4767 5313 -833 1941 141 0 3 chrX 120090 120416 -162479514 - AluSx SINE Alu 0 325 1 2108 134 0 10 chrX 120424 120729 -162479201 + AluSx SINE Alu 1 302 -10 1788 239 34 60 chrX 120729 121079 -162478851 + L1ME1 LINE L1 5595 5953 -381 1976 107 61 151 chrX 121079 121293 -162478637 - Tigger2a DNA MER2_type -2274 434 285 2005 154 13 0 chrX 121293 121599 -162478331 + AluJo SINE Alu 1 310 -2 1976 107 61 151 chrX 121599 121861 -162478069 - Tigger2a DNA MER2_type -2423 285 1 1788 239 34 60 chrX 121861 122112 -162477818 + L1ME1 LINE L1 5953 6334 0 572 184 14 40 chrX 122231 122588 -162477342 + (TATATG)n Simple_repeat Simple_repeat 1 347 0 477 216 3 55 chrX 122612 122884 -162477046 + (TATATG)n Simple_repeat Simple_repeat 1 375 -39 722 198 0 0 chrX 122884 123010 -162476920 + FLAM_C SINE Alu 1 126 -7 477 216 3 55 chrX 123010 123049 -162476881 + (TATATG)n Simple_repeat Simple_repeat 375 414 0 234 121 35 35 chrX 123053 123111 -162476819 + L1MCa LINE L1 2006 2063 -4363 520 208 4 28 chrX 123111 123357 -162476573 + (TATATG)n Simple_repeat Simple_repeat 1 240 0 220 295 16 0 chrX 123360 123421 -162476509 + (TATG)n Simple_repeat Simple_repeat 1 62 0 496 240 6 6 chrX 123422 123597 -162476333 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 1765 161 11 0 chrX 123912 124198 -162475732 - AluJo SINE Alu 0 312 24 1015 262 62 54 chrX 124567 125063 -162474867 + LTR1B LTR ERV1 25 524 -302 602 188 14 76 chrX 125168 125312 -162474618 + HUERS-P2 LTR ERV1 2 136 -2952 * 2836 207 37 40 chrX 125283 125882 -162474048 + HUERS-P2 LTR ERV1 616 1212 -1876 1718 196 10 3 chrX 125876 126177 -162473753 + HUERS-P2 LTR ERV1 1079 1381 -1707 * 2445 188 53 9 chrX 126176 126725 -162473205 + HUERS-P2 LTR ERV1 2467 3074 -14 973 229 113 91 chrX 126726 127290 -162472640 + LTR1B LTR ERV1 10 589 -237 977 191 0 0 chrX 127387 127544 -162472386 - AluJb SINE Alu -20 292 136 893 179 14 82 chrX 127544 127863 -162472067 - L1MA4 LINE L1 -27 6273 6011 23 0 0 0 chrX 128016 128039 -162471891 + AT_rich Low_complexity Low_complexity 1 23 0 743 149 9 0 chrX 128039 128153 -162471777 - FLAM_C SINE Alu -24 119 5 407 207 73 29 chrX 128606 128689 -162471241 + LTR8 LTR ERV1 1 74 -467 219 36 0 0 chrX 128689 128717 -162471213 + (TTG)n Simple_repeat Simple_repeat 3 30 0 407 207 73 29 chrX 128717 128793 -162471137 + LTR8 LTR ERV1 74 145 -396 1687 189 7 0 chrX 128909 129210 -162470720 + AluJo SINE Alu 5 307 -5 872 194 20 30 chrX 129443 129644 -162470286 + MER20 DNA MER1_type 1 199 -20 746 128 0 115 chrX 131288 131496 -162468434 - FLAM_C SINE Alu 0 191 1 264 234 26 13 chrX 131847 131924 -162468006 + (TA)n Simple_repeat Simple_repeat 2 79 0 358 259 29 3 chrX 131957 132313 -162467617 + (TA)n Simple_repeat Simple_repeat 1 365 0 267 189 54 34 chrX 132273 132321 -162467609 + (TTATA)n Simple_repeat Simple_repeat 1 47 -104 * 872 150 0 0 chrX 132321 132454 -162467476 - FLAM_C SINE Alu 0 133 1 267 189 54 34 chrX 132454 132553 -162467377 + (TTATA)n Simple_repeat Simple_repeat 47 151 0 262 219 14 41 chrX 132884 132957 -162466973 - MER116 DNA Mariner -2 78 8 2319 99 0 0 chrX 133036 133329 -162466601 - AluSx SINE Alu -19 293 1 180 158 0 0 chrX 133374 133412 -162466518 + T-rich Low_complexity Low_complexity 1 38 0 2008 143 0 0 chrX 133413 133729 -162466201 - AluSx SINE Alu 0 316 1 1597 179 66 0 chrX 133852 134125 -162465805 - AluJo SINE Alu -21 291 1 770 157 8 8 chrX 134125 134259 -162465671 - AluJo SINE Alu -176 136 3 821 136 0 0 chrX 134340 134458 -162465472 + AluJb SINE Alu 10 127 -185 2118 124 6 16 chrX 135104 135419 -162464511 + AluJo SINE Alu 1 312 0 254 93 23 0 chrX 135699 135742 -162464188 + MADE1 DNA Mariner 1 44 -36 621 146 9 125 chrX 135924 136136 -162463794 - MER4A LTR ERV1 -158 506 261 508 165 21 10 chrX 136136 136233 -162463697 - MER4A LTR ERV1 -566 98 1 2213 105 3 7 chrX 136635 136940 -162462990 - MER4E LTR ERV1 0 766 463 1047 57 0 29 chrX 136943 137083 -162462847 + AluSg/x SINE Alu 175 310 0 2960 127 31 27 chrX 137085 137574 -162462356 - MER4E LTR ERV1 -288 491 1 500 129 0 12 chrX 137925 138010 -162461920 - AluJ/FLAM SINE Alu -227 85 2 2905 13 0 0 chrX 138605 138960 -162460970 - AluY SINE Alu 0 355 1 740 191 0 22 chrX 139038 139174 -162460756 - FLAM_C SINE Alu 0 133 1 1617 162 41 0 chrX 139968 140239 -162459691 - AluJb SINE Alu -26 286 5 1830 185 0 6 chrX 140896 141210 -162458720 - AluJb SINE Alu 0 312 1 2245 123 0 0 chrX 141213 141521 -162458409 - AluSx SINE Alu -4 308 1 1400 140 31 109 chrX 141597 141715 -162458215 + AluJo SINE Alu 18 144 -168 2447 75 0 0 chrX 141715 142007 -162457923 - AluY SINE Alu -18 293 2 1400 140 31 109 chrX 142007 142181 -162457749 + AluJo SINE Alu 144 287 -25 2275 91 0 10 chrX 142184 142491 -162457439 + AluSx SINE Alu 1 304 -8 1823 150 0 36 chrX 142899 143205 -162456725 - AluJo SINE Alu -17 295 1 702 136 0 64 chrX 143609 143749 -162456181 - FLAM_C SINE Alu 0 133 3 2586 181 13 63 chrX 143754 144305 -162455625 + MER74A LTR ERVL 23 545 -13 2240 106 0 0 chrX 144352 144635 -162455295 + AluSx SINE Alu 1 307 0 184 42 0 0 chrX 144635 144659 -162455271 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 650 240 6 11 chrX 144706 144881 -162455049 + MER5B DNA MER1_type 1 174 -4 1840 167 0 20 chrX 144929 145228 -162454702 + AluJo SINE Alu 4 296 -16 998 210 0 0 chrX 145228 145404 -162454526 + AluJb SINE Alu 134 309 -3 900 137 0 8 chrX 145994 146125 -162453805 + FLAM_C SINE Alu 4 133 -10 24 0 0 0 chrX 146125 146149 -162453781 + AT_rich Low_complexity Low_complexity 1 24 0 841 164 7 7 chrX 146326 146478 -162453452 + MLT1A1 LTR MaLR 1 152 -213 949 111 0 15 chrX 146481 146616 -162453314 + FLAM_C SINE Alu 1 133 0 29 94 0 0 chrX 146988 147073 -162452857 + AT_rich Low_complexity Low_complexity 1 85 0 1683 161 0 81 chrX 147132 147454 -162452476 - AluJb SINE Alu -16 296 1 837 230 148 19 chrX 147779 148097 -162451833 + MLT1D LTR MaLR 1 359 -146 969 160 10 35 chrX 148100 148162 -162451768 - MLT1B LTR MaLR -195 195 133 2553 104 28 6 chrX 148162 148518 -162451412 - THE1B LTR MaLR 0 364 1 969 160 10 35 chrX 148518 148655 -162451275 - MLT1B LTR MaLR -257 133 1 * 988 266 76 6 chrX 148655 149008 -162450922 + MLT1C LTR MaLR 88 465 -2 2025 130 0 27 chrX 149717 150018 -162449912 + AluSx SINE Alu 1 293 -19 1513 181 46 11 chrX 150157 150438 -162449492 + AluJo SINE Alu 1 291 -21 2105 144 7 0 chrX 150808 151107 -162448823 - AluSx SINE Alu -11 301 1 930 119 0 22 chrX 151198 151332 -162448598 - FLAM_C SINE Alu -2 131 1 1720 183 0 3 chrX 151739 152046 -162447884 - AluJo SINE Alu 0 306 1 1106 141 0 0 chrX 152108 152271 -162447659 + AluSg/x SINE Alu 129 291 -19 1905 133 0 73 chrX 152295 152625 -162447305 + AluJb SINE Alu 6 311 -1 241 167 42 0 chrX 153256 153304 -162446626 + MLT1D LTR MaLR 1 50 -455 327 83 42 0 chrX 153305 153353 -162446577 + MLT1D LTR MaLR 1 50 -455 303 125 42 0 chrX 153354 153402 -162446528 + MLT1D LTR MaLR 1 50 -455 335 303 80 42 chrX 153510 153774 -162446156 + L2 LINE L2 2703 2976 -338 579 159 0 37 chrX 153885 154048 -162445882 + CT-rich Low_complexity Low_complexity 3 159 0 222 314 35 23 chrX 154102 154188 -162445742 + L2 LINE L2 3137 3223 -49 2511 81 0 0 chrX 154464 154774 -162445156 - AluSg SINE Alu 0 310 1 1674 174 14 0 chrX 154774 155050 -162444880 - AluJo SINE Alu -32 280 1 2368 115 0 0 chrX 155176 155488 -162444442 - AluSx SINE Alu 0 312 1 3967 105 86 21 chrX 156047 156356 -162443574 - PABL_A LTR ERV1 0 660 372 2284 107 0 0 chrX 156356 156682 -162443248 + AluSx SINE Alu 1 326 0 3967 105 86 21 chrX 156682 156990 -162442940 - PABL_A LTR ERV1 -288 372 2 270 189 0 0 chrX 156996 157049 -162442881 - L1MB7 LINE L1 -61 6123 6071 2773 121 23 35 chrX 157049 157393 -162442537 - MER4E LTR ERV1 0 766 419 2523 94 0 0 chrX 157393 157700 -162442230 + AluSx SINE Alu 1 307 -5 2773 121 23 35 chrX 157700 157961 -162441969 - MER4E LTR ERV1 -347 419 1 1791 157 10 13 chrX 157984 158289 -162441641 - AluJb SINE Alu 0 312 9 343 143 39 0 chrX 158297 158374 -162441556 - L1MB7 LINE L1 -109 6075 5996 921 143 0 29 chrX 158422 158562 -162441368 - AluJo SINE Alu -176 136 1 598 212 97 0 chrX 158569 158734 -162441196 - L1MB7 LINE L1 -218 5966 5786 2420 99 10 0 chrX 158780 159083 -162440847 + AluSx SINE Alu 1 306 -6 392 265 5 134 chrX 159129 159518 -162440412 - HsTC2 DNA Tc2 -21 1877 1539 * 956 294 73 12 chrX 159515 159923 -162440007 - MLT1C LTR MaLR -30 437 5 813 233 149 19 chrX 159938 160247 -162439683 - MLT1D LTR MaLR -145 360 12 329 217 13 16 chrX 160269 160408 -162439522 - MLT1C LTR MaLR -145 360 192 180 163 0 0 chrX 160548 160591 -162439339 + GA-rich Low_complexity Low_complexity 2 44 0 4099 77 16 12 chrX 160956 161529 -162438401 - PABL_B LTR ERV1 0 667 93 2439 94 0 0 chrX 161529 161836 -162438094 - AluSx SINE Alu -5 307 1 253 286 0 0 chrX 162529 162585 -162437345 + (CA)n Simple_repeat Simple_repeat 1 56 0 1820 104 101 17 chrX 162609 162896 -162437034 - AluSx SINE Alu -1 311 1 720 153 65 32 chrX 162901 163025 -162436905 - FLAM_C SINE Alu -14 129 2 1073 82 109 0 chrX 163118 163265 -162436665 + AluSg/x SINE Alu 147 309 -1 1564 239 28 0 chrX 163289 163682 -162436248 - L1MB5 LINE L1 -49 6125 5722 1545 161 24 31 chrX 164195 164486 -162435444 + AluJb SINE Alu 24 312 0 1970 129 6 55 chrX 164590 164916 -162435014 + AluSx SINE Alu 1 310 -2 959 226 26 44 chrX 165359 165559 -162434371 - MLT1B LTR MaLR -15 375 180 2270 113 7 3 chrX 165559 165869 -162434061 - AluSx SINE Alu -1 311 1 959 226 26 44 chrX 165869 165938 -162433992 - MLT1B LTR MaLR -210 180 111 1325 188 82 41 chrX 166246 166538 -162433392 + AluJo SINE Alu 1 304 -8 263 200 0 43 chrX 166539 166609 -162433321 + GA-rich Low_complexity Low_complexity 1 67 0 1739 164 13 20 chrX 167210 167508 -162432422 - AluJo SINE Alu -13 299 4 928 190 15 41 chrX 168002 168197 -162431733 + AluJo SINE Alu 1 190 -122 1338 82 0 22 chrX 168742 168947 -162430983 + AluSg/x SINE Alu 118 310 0 2393 99 0 3 chrX 169122 169435 -162430495 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 169679 169714 -162430216 + GC_rich Low_complexity Low_complexity 1 35 0 244 252 0 66 chrX 169914 170050 -162429880 + GA-rich Low_complexity Low_complexity 3 211 0 233 211 18 0 chrX 170143 170200 -162429730 + (CCCCG)n Simple_repeat Simple_repeat 2 59 0 2887 141 90 52 chrX 170849 171356 -162428574 - MER51A LTR ERV1 -9 625 90 1729 115 20 112 chrX 171356 171705 -162428225 + AluYb8 SINE Alu 2 318 0 2887 141 90 52 chrX 171705 171799 -162428131 - MER51A LTR ERV1 -544 90 1 422 202 53 0 chrX 172068 172162 -162427768 + AluSg/x SINE Alu 208 306 -3 632 200 40 23 chrX 172162 172365 -162427565 - LTR54B LTR ERV1 -181 329 52 5014 91 3 3 chrX 172365 173025 -162426905 + PABL_A LTR ERV1 1 660 0 632 200 40 23 chrX 173025 173066 -162426864 - LTR54B LTR ERV1 -458 52 13 923 237 88 9 chrX 173513 173830 -162426100 - MLT1C LTR MaLR -32 435 94 912 187 44 6 chrX 173838 174020 -162425910 + MLT1B LTR MaLR 1 189 -201 634 265 95 30 chrX 174002 174347 -162425583 - MLT1C LTR MaLR -98 369 1 * 1955 140 0 3 chrX 174614 174900 -162425030 + AluJb SINE Alu 1 285 -27 597 230 13 13 chrX 174967 175119 -162424811 - L1MB8 LINE L1 -22 6156 6005 1857 158 10 49 chrX 175129 175456 -162424474 + MLT1B LTR MaLR 12 323 -67 2081 130 37 0 chrX 175456 175756 -162424174 - AluJb SINE Alu -1 311 1 1857 158 10 49 chrX 175756 175815 -162424115 + MLT1B LTR MaLR 323 383 -7 592 223 1 7 chrX 175820 175959 -162423971 - L1MB7 LINE L1 -192 5992 5876 2352 97 0 25 chrX 176038 176395 -162423535 - AluSx SINE Alu 0 349 1 1083 211 78 14 chrX 176402 176686 -162423244 + LTR52 LTR ERVL 23 324 -97 180 0 0 0 chrX 176691 176711 -162423219 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 216 0 0 0 chrX 176710 176734 -162423196 + (GA)n Simple_repeat Simple_repeat 1 24 0 290 177 16 16 chrX 177245 177307 -162422623 - MER4D LTR ERV1 -8 895 834 332 97 58 19 chrX 177365 177468 -162422462 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 358 132 54 38 chrX 177513 177774 -162422156 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 563 219 17 62 chrX 177800 177978 -162421952 - MER20 DNA MER1_type -2 217 48 264 77 0 0 chrX 178008 178047 -162421883 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 200 140 70 0 chrX 178056 178113 -162421817 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1334 95 0 0 chrX 178413 178581 -162421349 + AluSg/x SINE Alu 137 304 -8 2290 230 48 11 chrX 178906 179445 -162420485 - MER68 LTR ERV1 -2 560 2 2015 137 0 10 chrX 179802 180095 -162419835 - AluSx SINE Alu -1 311 22 2388 53 40 7 chrX 180178 180479 -162419451 - AluY SINE Alu 0 311 1 1679 192 10 0 chrX 181177 181474 -162418456 + AluJo SINE Alu 1 300 -12 1882 157 124 122 chrX 181683 181696 -162418234 - L1MA4A LINE L1 -6 6297 6286 1218 186 103 73 chrX 181696 181997 -162417933 - AluJo SINE Alu -2 310 1 1882 157 124 122 chrX 181997 182442 -162417488 - L1MA4A LINE L1 -17 6286 5843 1765 158 3 27 chrX 182442 182740 -162417190 - AluSx SINE Alu -21 291 1 1882 157 124 122 chrX 182740 182792 -162417138 - L1MA4A LINE L1 -460 5843 5793 2195 128 0 0 chrX 182792 183098 -162416832 - AluJb SINE Alu -6 306 1 1882 157 124 122 chrX 183098 183216 -162416714 - L1MA4A LINE L1 -510 5793 5666 2278 108 0 0 chrX 183501 183796 -162416134 + AluSx SINE Alu 9 303 -9 1608 176 8 0 chrX 183800 184055 -162415875 + AluJb SINE Alu 26 282 -30 1835 148 13 44 chrX 184412 184730 -162415200 + AluJo SINE Alu 5 312 0 2340 133 75 8 chrX 184812 185211 -162414719 - MSTA LTR MaLR 0 428 3 3313 114 110 9 chrX 185444 185998 -162413932 + MER4B LTR ERV1 1 610 0 2413 141 31 9 chrX 186356 186781 -162413149 - MER4E LTR ERV1 -1 778 345 832 105 3 238 chrX 186774 186795 -162413135 - MER4D LTR ERV1 -653 219 195 * 2114 130 3 13 chrX 186795 187094 -162412836 - AluJb SINE Alu -16 296 1 832 105 3 238 chrX 187094 187251 -162412679 - MER4D LTR ERV1 -677 195 3 2562 75 0 0 chrX 187251 187559 -162412371 - AluY SINE Alu -3 308 1 2048 128 7 3 chrX 187569 187858 -162412072 - AluSx SINE Alu -22 290 1 832 105 3 238 chrX 187858 187953 -162411977 - MER4D LTR ERV1 -755 117 1 279 290 45 52 chrX 188377 188532 -162411398 - L2 LINE L2 -1 3312 3159 72 89 0 0 chrX 188532 188723 -162411207 + AT_rich Low_complexity Low_complexity 1 191 0 1268 102 0 0 chrX 189175 189187 -162410743 - AluSg/x SINE Alu -2 308 297 417 81 0 0 chrX 189187 189249 -162410681 - L1PB1 LINE L1 0 6151 6090 1268 102 0 0 chrX 189249 189402 -162410528 - AluSg/x SINE Alu -12 298 143 2066 146 10 0 chrX 189461 189763 -162410167 + AluSx SINE Alu 1 305 -7 207 0 0 0 chrX 189844 189867 -162410063 + (TG)n Simple_repeat Simple_repeat 1 23 0 396 228 39 63 chrX 189875 190002 -162409928 - MLT1G1 LTR MaLR -8 587 464 471 118 0 0 chrX 190276 190352 -162409578 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 180 0 0 0 chrX 190412 190432 -162409498 + (GA)n Simple_repeat Simple_repeat 1 20 0 544 82 47 31 chrX 190448 190716 -162409214 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 601 141 28 34 chrX 190740 190917 -162409013 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 2046 102 0 25 chrX 191804 192116 -162407814 - AluSx SINE Alu 0 309 5 1911 167 3 16 chrX 192506 192811 -162407119 + AluJb SINE Alu 1 301 -11 364 288 68 27 chrX 192891 193037 -162406893 - MLT1J LTR MaLR -153 358 207 21 36 0 0 chrX 194016 194044 -162405886 + AT_rich Low_complexity Low_complexity 1 28 0 391 252 78 9 chrX 194264 194379 -162405551 - MLT1J LTR MaLR -153 358 236 360 183 49 24 chrX 194572 194654 -162405276 + MLT1H LTR MaLR 52 135 -420 536 219 214 26 chrX 195198 195390 -162404540 - MLT1J LTR MaLR -46 465 238 481 275 24 24 chrX 195583 195750 -162404180 + MLT1H LTR MaLR 94 260 -289 303 174 35 0 chrX 195783 195869 -162404061 + GA-rich Low_complexity Low_complexity 1 89 0 2189 153 70 48 chrX 195898 196357 -162403573 - MLT1D LTR MaLR 0 505 37 451 66 16 0 chrX 196351 196412 -162403518 - THE1C LTR MaLR -313 62 1 * 590 195 0 159 chrX 196614 196683 -162403247 + MLT1D LTR MaLR 8 86 -419 1783 218 49 13 chrX 196683 197133 -162402797 - MLT1C LTR MaLR 0 467 2 590 195 0 159 chrX 197133 197155 -162402775 + MLT1D LTR MaLR 86 110 -395 1457 103 45 232 chrX 197155 197603 -162402327 - THE1B LTR MaLR 0 364 1 590 195 0 159 chrX 197603 197705 -162402225 + MLT1D LTR MaLR 110 171 -334 1634 175 3 13 chrX 197740 198054 -162401876 - AluJo SINE Alu -1 311 1 823 173 8 0 chrX 198054 198187 -162401743 - AluJo SINE Alu -177 135 2 913 158 0 49 chrX 198206 198389 -162401541 - L1MA4 LINE L1 -7 6293 6119 2138 114 16 0 chrX 198389 198695 -162401235 + AluSx SINE Alu 1 311 -1 913 158 0 49 chrX 198695 198714 -162401216 - L1MA4 LINE L1 -181 6119 6101 2033 115 20 3 chrX 198728 199033 -162400897 + AluSx SINE Alu 1 310 -2 189 0 0 0 chrX 199157 199178 -162400752 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chrX 199320 199347 -162400583 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chrX 199514 199538 -162400392 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1484 157 8 0 chrX 199540 199795 -162400135 - AluJo SINE Alu -30 282 26 891 232 46 46 chrX 199951 200231 -162399699 + PABL_A LTR ERV1 381 660 0 1572 201 84 43 chrX 200306 200748 -162399182 - MER31A LTR ERV1 -25 460 1 1730 158 44 0 chrX 201453 201750 -162398180 + AluJb SINE Alu 1 310 -2 481 239 82 0 chrX 201821 201955 -162397975 + L1M4 LINE L1 4971 5115 -1031 219 36 0 0 chrX 201960 201988 -162397942 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1953 90 25 7 chrX 202011 202312 -162397618 + AluSc SINE Alu 1 306 0 2189 104 0 13 chrX 202313 202621 -162397309 - AluSq SINE Alu -9 304 1 324 206 100 123 chrX 202621 202791 -162397139 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 202799 202914 -162397016 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 202964 203260 -162396670 - AluSx SINE Alu -14 298 12 1873 161 3 0 chrX 203283 203594 -162396336 - AluJb SINE Alu 0 312 1 285 317 0 0 chrX 203796 203878 -162396052 - MIR SINE MIR -11 251 170 365 219 47 60 chrX 204362 204526 -162395404 + MER34 LTR ERV1 5 191 -351 2630 108 0 5 chrX 204550 204922 -162395008 - L1PB1 LINE L1 0 6151 5782 265 263 0 0 chrX 204923 205003 -162394927 + L1MC4 LINE L1 6624 6703 -1339 * 299 89 0 0 chrX 204992 205037 -162394893 + L1P5 LINE L1 5782 5826 -325 324 356 0 0 chrX 205040 205130 -162394800 - L1MC4 LINE L1 -1339 6703 6614 1312 102 2 33 chrX 205145 205357 -162394573 - L1P5 LINE L1 -360 5791 5586 1291 196 38 38 chrX 205379 205493 -162394437 + MER57B LTR ERV1 1 114 -320 1725 140 238 14 chrX 205493 205842 -162394088 - MSTA LTR MaLR -1 427 1 1291 196 38 38 chrX 205842 206018 -162393912 + MER57B LTR ERV1 113 291 -143 379 165 89 0 chrX 206025 206104 -162393826 + LTR26B LTR ERV1 446 531 0 662 218 28 0 chrX 206126 206268 -162393662 + MLT1A1 LTR MaLR 220 365 0 1872 111 17 34 chrX 206390 206732 -162393198 - AluSx SINE Alu 0 337 1 651 175 56 81 chrX 206732 206892 -162393038 - MLT1A1 LTR MaLR -209 156 1 4234 115 6 9 chrX 207302 207891 -162392039 + MER41B LTR ERV1 1 589 -46 4133 58 24 7 chrX 207891 208440 -162391490 + LTR6B LTR ERV1 1 558 0 4234 115 6 9 chrX 208440 208487 -162391443 + MER41B LTR ERV1 589 635 0 533 85 24 12 chrX 208804 208886 -162391044 - MER4E LTR ERV1 0 779 697 3493 126 35 6 chrX 208886 209424 -162390506 + MER41A LTR ERV1 1 554 0 1647 214 76 31 chrX 209469 209914 -162390016 + MER50 LTR ERV1 251 715 -19 545 121 12 0 chrX 209942 210025 -162389905 + L1MB2 LINE L1 6023 6106 -65 841 147 0 15 chrX 210051 210187 -162389743 - AluJb SINE Alu -177 135 2 333 149 15 0 chrX 210187 210254 -162389676 + L1MB2 LINE L1 6100 6167 -4 2050 136 3 0 chrX 210526 210836 -162389094 - AluSx SINE Alu -1 311 1 293 89 0 0 chrX 211068 211113 -162388817 - Alu SINE Alu -7 295 251 720 162 0 0 chrX 211166 211277 -162388653 - AluSg/x SINE Alu -7 305 195 1578 170 3 17 chrX 211327 211621 -162388309 + AluJb SINE Alu 1 290 -22 367 260 10 0 chrX 211686 211782 -162388148 - MIR SINE MIR -42 220 124 466 204 21 126 chrX 211903 212007 -162387923 + L1MC4 LINE L1 6822 6899 -1143 2279 90 0 0 chrX 212007 212308 -162387622 + AluSx SINE Alu 1 301 -11 466 204 21 126 chrX 212308 212394 -162387536 + L1MC4 LINE L1 6899 6992 -1050 944 147 0 35 chrX 212394 212564 -162387366 + FRAM SINE Alu 1 163 -13 238 353 45 8 chrX 212667 212800 -162387130 + L1MC4 LINE L1 7092 7229 -813 1638 163 6 38 chrX 212997 213317 -162386613 + AluJo SINE Alu 1 310 -2 2149 124 7 0 chrX 213346 213653 -162386277 - AluSx SINE Alu -3 309 1 22 0 0 0 chrX 213661 213683 -162386247 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 214007 214036 -162385894 + AT_rich Low_complexity Low_complexity 1 29 0 327 230 0 0 chrX 214036 214110 -162385820 - L1PA16 LINE L1 -9 6157 6084 1164 147 0 11 chrX 214139 214316 -162385614 - MER4A LTR ERV1 0 664 490 825 114 8 0 chrX 214671 214803 -162385127 - L1MA5A LINE L1 -226 6071 5939 1183 149 4 54 chrX 214823 214841 -162385089 + L1MA5A LINE L1 6065 6082 -215 3582 127 15 2 chrX 214841 215361 -162384569 + MER1A DNA MER1_type 1 527 0 1183 149 4 54 chrX 215361 215583 -162384347 + L1MA5A LINE L1 6082 6293 -4 1824 151 0 7 chrX 215684 215988 -162383942 - AluSx SINE Alu -10 302 1 1665 160 17 0 chrX 218033 218321 -162381609 - AluJo SINE Alu -18 294 2 294 175 0 0 chrX 218474 218531 -162381399 - MER4-int LTR ERV1 -5430 1168 1112 243 0 0 0 chrX 218756 218783 -162381147 + (CA)n Simple_repeat Simple_repeat 2 28 0 525 132 40 20 chrX 218907 219059 -162380871 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 538 154 22 33 chrX 219090 219272 -162380658 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 297 136 36 27 chrX 219337 219383 -162380547 + (TAGA)n Simple_repeat Simple_repeat 3 47 -66 2170 90 17 0 chrX 219383 219682 -162380248 + AluSx SINE Alu 1 304 -8 297 136 36 27 chrX 219682 219745 -162380185 + (TAGA)n Simple_repeat Simple_repeat 47 113 0 21 0 0 0 chrX 219851 219872 -162380058 + AT_rich Low_complexity Low_complexity 1 21 0 1345 161 93 43 chrX 220378 220680 -162379250 + AluJb SINE Alu 1 312 0 849 119 0 0 chrX 221865 221983 -162377947 + FLAM_C SINE Alu 1 118 -25 1985 34 0 4 chrX 221990 222224 -162377706 - AluY SINE Alu -21 290 58 1938 117 0 0 chrX 222333 222606 -162377324 - AluSq SINE Alu -40 273 1 324 206 100 123 chrX 222606 222776 -162377154 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 222784 222899 -162377031 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 222949 223245 -162376685 - AluSx SINE Alu -14 298 12 1261 248 3 0 chrX 223264 223575 -162376355 - AluJb SINE Alu 0 312 1 22 0 0 0 chrX 224056 224078 -162375852 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chrX 224221 224248 -162375682 + (A)n Simple_repeat Simple_repeat 1 27 0 546 227 161 39 chrX 224757 224861 -162375069 + MLT1J2 LTR MaLR 126 216 -234 653 248 25 20 chrX 224861 225063 -162374867 - MER105 DNA DNA -1 203 1 546 227 161 39 chrX 225063 225229 -162374701 + MLT1J2 LTR MaLR 216 450 0 296 338 46 70 chrX 225624 225908 -162374022 - L2 LINE L2 -55 3258 2982 1792 135 40 20 chrX 226169 226472 -162373458 - AluSx SINE Alu -3 309 1 1091 196 12 80 chrX 226492 226914 -162373016 + L1MA9 LINE L1 5946 6324 -10 25 31 0 0 chrX 226919 226951 -162372979 + AT_rich Low_complexity Low_complexity 1 32 0 228 306 105 24 chrX 227143 227267 -162372663 - MIR SINE MIR -74 188 55 2052 102 0 3 chrX 228545 228875 -162371055 - AluSx SINE Alu 0 329 1 550 293 99 92 chrX 229336 229779 -162370151 + L1MEc LINE L1 786 1156 -5049 1967 106 0 3 chrX 229779 230092 -162369838 + AluSx SINE Alu 1 312 0 550 293 99 92 chrX 230092 230201 -162369729 + L1MEc LINE L1 1156 1263 -4942 1771 147 16 3 chrX 230340 230646 -162369284 + AluJb SINE Alu 1 310 -2 1915 172 21 3 chrX 230887 231213 -162368717 + MER2 DNA MER2_type 7 338 -7 1276 99 0 6 chrX 231430 231612 -162368318 - L1PA8 LINE L1 0 6172 5992 880 64 0 0 chrX 231804 231914 -162368016 - AluSx SINE Alu -9 303 194 978 128 0 0 chrX 231915 232056 -162367874 - AluSx SINE Alu -172 141 1 2128 118 0 3 chrX 232163 232469 -162367461 - AluSx SINE Alu -7 305 1 502 146 12 0 chrX 232469 232551 -162367379 + Tigger5 DNA MER2_type 2241 2323 0 4978 136 13 19 chrX 233456 233786 -162366144 - L1MA5A LINE L1 0 6297 5967 1746 152 3 3 chrX 233786 234069 -162365861 - AluJb SINE Alu -29 283 1 4978 136 13 19 chrX 234069 234596 -162365334 - L1MA5A LINE L1 -330 5967 5445 2032 126 13 10 chrX 235223 235533 -162364397 + AluSx SINE Alu 1 311 -1 453 134 62 52 chrX 235715 235812 -162364118 + MER4A LTR ERV1 1 98 -566 1686 103 22 43 chrX 235812 236131 -162363799 + MER4A LTR ERV1 263 633 -31 1852 201 40 49 chrX 237197 237678 -162362252 - MLT1D LTR MaLR -1 488 27 189 361 0 0 chrX 238307 238368 -162361562 + L2 LINE L2 3208 3268 -4 2125 121 0 0 chrX 238562 238867 -162361063 + AluSx SINE Alu 1 305 -7 180 0 0 0 chrX 238928 238948 -162360982 + (A)n Simple_repeat Simple_repeat 1 20 0 349 209 85 69 chrX 240744 240960 -162358970 - MER106B DNA MER1_type -10 1049 3 965 252 103 50 chrX 241046 241105 -162358825 - Charlie1b DNA MER1_type -2259 502 448 1804 150 7 16 chrX 241105 241412 -162358518 - AluJb SINE Alu -8 304 1 965 252 103 50 chrX 241412 241829 -162358101 - Charlie1b DNA MER1_type -2313 448 1 391 307 0 0 chrX 241882 242035 -162357895 + (TA)n Simple_repeat Simple_repeat 2 154 0 259 141 16 62 chrX 242051 242179 -162357751 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 203 146 0 42 chrX 242209 242257 -162357673 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 344 145 5 72 chrX 242283 242476 -162357454 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 568 145 11 43 chrX 242506 242692 -162357238 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 702 11 32 0 chrX 242777 242872 -162357058 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 524 191 0 71 chrX 243609 243653 -162356277 + MER58A DNA MER1_type 45 91 -250 1512 135 9 120 chrX 243653 243986 -162355944 - AluJo SINE Alu -16 296 1 524 191 0 71 chrX 243986 244004 -162355926 + MER58A DNA MER1_type 91 109 -232 1899 205 6 0 chrX 244004 244350 -162355580 + MER7A DNA MER2_type 1 346 0 524 191 0 71 chrX 244350 244412 -162355518 + MER58A DNA MER1_type 109 161 -63 2019 140 7 0 chrX 244655 244940 -162354990 - AluSx SINE Alu -25 287 1 1274 148 14 0 chrX 245156 245366 -162354564 + AluSg/x SINE Alu 86 298 -14 2183 93 14 0 chrX 246085 246401 -162353529 + AluSx SINE Alu 1 320 0 1260 115 0 0 chrX 246407 246581 -162353349 + AluSg/x SINE Alu 131 304 -8 1848 234 84 40 chrX 247136 247325 -162352605 + L1MC4a LINE L1 6787 6966 -842 1994 146 0 7 chrX 247325 247619 -162352311 - AluJo SINE Alu -20 292 1 1848 234 84 40 chrX 247619 248048 -162351882 + L1MC4a LINE L1 6966 7439 -369 2083 110 7 0 chrX 248048 248350 -162351580 + AluSx SINE Alu 1 304 0 1848 234 84 40 chrX 248350 248387 -162351543 + L1MC4a LINE L1 7439 7473 -335 2813 74 94 5 chrX 248661 249066 -162350864 - LTR7 LTR ERV1 -9 441 1 1846 161 3 11 chrX 249435 249759 -162350171 - AluJo SINE Alu 0 322 1 229 314 93 21 chrX 249767 249961 -162349969 - HAL1 LINE L1 -767 1740 1533 245 284 176 12 chrX 249981 250231 -162349699 - HAL1 LINE L1 -1059 1448 1158 253 299 69 0 chrX 250402 250489 -162349441 - L1ME LINE L1 -401 5720 5628 717 106 10 0 chrX 250808 250912 -162349018 - L1MA2 LINE L1 -56 6248 6144 2281 79 23 13 chrX 251032 251335 -162348595 - AluSx SINE Alu -6 306 1 552 255 60 0 chrX 251616 251765 -162348165 + MER20 DNA MER1_type 48 205 -14 423 0 0 0 chrX 251841 251888 -162348042 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1967 105 3 57 chrX 251889 252185 -162347745 - AluSx SINE Alu -32 280 1 1593 159 4 15 chrX 252822 253092 -162346838 - AluJo SINE Alu -5 307 41 30 0 0 0 chrX 253185 253215 -162346715 + AT_rich Low_complexity Low_complexity 1 30 0 2237 113 0 25 chrX 253217 253536 -162346394 + AluSx SINE Alu 1 311 -1 318 203 0 0 chrX 253539 253603 -162346327 + L1MC4 LINE L1 6640 6703 -1339 23 0 0 0 chrX 253604 253627 -162346303 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 253649 253684 -162346246 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 253702 253724 -162346206 + AT_rich Low_complexity Low_complexity 1 22 0 507 268 0 0 chrX 253754 253933 -162345997 + (TA)n Simple_repeat Simple_repeat 1 179 0 234 197 53 53 chrX 253959 254035 -162345895 + L1MC3 LINE L1 6571 6646 -1139 652 221 2 10 chrX 254035 254627 -162345303 + (CATATA)n Simple_repeat Simple_repeat 1 587 0 214 270 0 58 chrX 254676 254850 -162345080 + (CATATA)n Simple_repeat Simple_repeat 2 165 0 243 231 103 0 chrX 254853 254931 -162344999 - L1MC4 LINE L1 -1344 6698 6613 1744 170 0 38 chrX 255434 255752 -162344178 + AluJb SINE Alu 1 306 -6 2070 128 10 3 chrX 256263 256559 -162343371 + AluJb SINE Alu 1 298 -14 1760 174 16 10 chrX 256883 257193 -162342737 + AluJo SINE Alu 1 312 0 630 168 23 12 chrX 257907 258080 -162341850 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 600 134 53 12 chrX 258113 258284 -162341646 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 682 116 35 17 chrX 258298 258470 -162341460 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 448 86 86 19 chrX 258525 258687 -162341243 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 181 158 53 0 chrX 258717 258774 -162341156 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1320 161 87 0 chrX 259316 259570 -162340360 - L1MB5 LINE L1 -6 6168 5893 1510 178 68 0 chrX 259609 259902 -162340028 - L1MB5 LINE L1 -14 6160 5848 837 251 55 42 chrX 260488 260891 -162339039 + HAL1 LINE L1 970 1377 -1130 348 83 0 0 chrX 260908 260956 -162338974 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 302 260 123 62 chrX 261008 261300 -162338630 + HAL1 LINE L1 1404 1713 -794 23 0 0 0 chrX 261322 261345 -162338585 + AT_rich Low_complexity Low_complexity 1 23 0 901 179 7 0 chrX 261345 261490 -162338440 + FRAM SINE Alu 12 157 -19 393 22 0 0 chrX 261491 261537 -162338393 + (TG)n Simple_repeat Simple_repeat 2 47 0 1601 179 23 0 chrX 262404 262667 -162337263 - AluJo SINE Alu -25 287 19 1792 111 16 46 chrX 262682 262988 -162336942 - AluJo SINE Alu -10 302 6 905 173 113 90 chrX 263555 263910 -162336020 - MLT1C LTR MaLR 0 390 61 3924 107 42 23 chrX 263910 264509 -162335421 + MER4B LTR ERV1 1 610 0 905 173 113 90 chrX 264509 264567 -162335363 - MLT1C LTR MaLR -329 61 6 1980 177 8 20 chrX 265943 266338 -162333592 + MLT1B LTR MaLR 1 390 0 1588 128 76 49 chrX 266364 266541 -162333389 + MLT1B LTR MaLR 1 191 -199 2230 110 0 0 chrX 266541 266833 -162333097 + AluSp SINE Alu 1 292 -21 1588 128 76 49 chrX 266833 266943 -162332987 + MLT1B LTR MaLR 191 296 -94 487 265 19 31 chrX 267183 267345 -162332585 + Charlie1 DNA MER1_type 2163 2322 -439 259 246 33 16 chrX 267753 267814 -162332116 - HERVL74 LTR ERVL -4776 909 848 924 130 0 0 chrX 268010 268133 -162331797 + FLAM_C SINE Alu 1 123 -20 23 54 0 0 chrX 268133 268170 -162331760 + AT_rich Low_complexity Low_complexity 1 37 0 1945 141 7 7 chrX 268431 268737 -162331193 - AluJo SINE Alu -6 306 1 26 0 0 0 chrX 269798 269824 -162330106 + GC_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chrX 269953 269990 -162329940 + GC_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chrX 270097 270131 -162329799 + GC_rich Low_complexity Low_complexity 1 34 0 189 154 0 0 chrX 270346 270385 -162329545 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 222 236 0 18 chrX 270428 270483 -162329447 + (CATG)n Simple_repeat Simple_repeat 3 56 0 358 270 3 17 chrX 270530 270893 -162329037 + (TGAA)n Simple_repeat Simple_repeat 1 357 0 198 289 0 0 chrX 270912 271061 -162328869 + (TGAA)n Simple_repeat Simple_repeat 4 152 0 195 162 0 0 chrX 271121 271158 -162328772 + (TGAG)n Simple_repeat Simple_repeat 1 37 0 321 304 19 6 chrX 271165 271326 -162328604 + (TGAA)n Simple_repeat Simple_repeat 1 163 0 403 186 0 16 chrX 271408 271537 -162328393 + (TGAA)n Simple_repeat Simple_repeat 4 130 0 427 216 28 33 chrX 271560 271818 -162328112 + (TGAG)n Simple_repeat Simple_repeat 1 256 0 3513 171 2 0 chrX 272279 272869 -162327061 - L1PB4 LINE L1 -3 6153 5563 593 264 46 42 chrX 273368 273584 -162326346 - MER20 DNA MER1_type -2 217 1 565 131 51 17 chrX 273586 273806 -162326124 + (TAGA)n Simple_repeat Simple_repeat 1 262 -15 246 32 0 0 chrX 273806 273837 -162326093 + (ATG)n Simple_repeat Simple_repeat 2 32 0 565 131 51 17 chrX 273837 273854 -162326076 + (TAGA)n Simple_repeat Simple_repeat 262 277 0 296 171 51 8 chrX 273975 274092 -162325838 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 460 241 89 0 chrX 274095 274207 -162325723 - MER20 DNA MER1_type -5 214 93 299 225 81 38 chrX 274321 274481 -162325449 + MER5A DNA MER1_type 23 189 0 758 163 0 23 chrX 275138 275267 -162324663 + FLAM_C SINE Alu 1 126 -17 1625 171 23 33 chrX 275279 275583 -162324347 + AluJo SINE Alu 1 301 -11 22 0 0 0 chrX 275777 275799 -162324131 + AT_rich Low_complexity Low_complexity 1 22 0 2361 105 3 0 chrX 275941 276245 -162323685 - AluSx SINE Alu -7 305 1 378 316 117 10 chrX 276386 276592 -162323338 + MLT1L LTR MaLR 344 571 -44 2386 86 0 7 chrX 276731 277035 -162322895 - AluSx SINE Alu -10 302 1 228 276 23 11 chrX 277036 277123 -162322807 - Charlie1 DNA MER1_type -32 2729 2642 2201 199 81 25 chrX 277157 277785 -162322145 - Charlie1 DNA MER1_type -94 2667 2005 1727 178 0 7 chrX 277889 278187 -162321743 + AluJo SINE Alu 1 296 -16 239 297 133 36 chrX 278188 278353 -162321577 - L2 LINE L2 -15 3298 3118 1633 174 10 34 chrX 279506 279804 -162320126 - AluJo SINE Alu -21 291 1 2340 74 0 3 chrX 279854 280163 -162319767 + AluSx SINE Alu 1 308 0 1910 170 0 7 chrX 280455 280755 -162319175 - AluJo SINE Alu -14 298 1 25 31 0 0 chrX 280818 280850 -162319080 + AT_rich Low_complexity Low_complexity 1 32 0 742 111 0 16 chrX 281739 281865 -162318065 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 1618 170 62 4 chrX 281865 282141 -162317789 - AluJo SINE Alu -20 292 1 1952 139 70 17 chrX 282277 282621 -162317309 - Tigger2a DNA MER2_type -72 362 1 198 0 0 0 chrX 283119 283141 -162316789 + (TG)n Simple_repeat Simple_repeat 2 23 0 242 154 19 39 chrX 284648 284700 -162315230 + L1M4c LINE L1 2440 2490 -3894 314 153 68 0 chrX 284743 284802 -162315128 + L1MA9 LINE L1 6250 6312 0 463 63 0 0 chrX 284921 284984 -162314946 + L1MA9 LINE L1 6250 6312 0 352 204 28 106 chrX 285939 286081 -162313849 - MER96B DNA MER1_type? -285 132 2 206 265 0 0 chrX 286911 286960 -162312970 + T-rich Low_complexity Low_complexity 1 49 0 294 215 0 51 chrX 286963 287042 -162312888 - U13 snRNA snRNA -2 102 28 2247 113 0 13 chrX 287046 287356 -162312574 + AluSx SINE Alu 1 306 -6 550 114 0 0 chrX 287674 287753 -162312177 - MADE1 DNA Mariner 0 80 2 243 0 0 0 chrX 287986 288013 -162311917 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2260 108 0 0 chrX 288020 288308 -162311622 - AluSx SINE Alu -24 288 1 722 181 0 0 chrX 288311 288427 -162311503 - FLAM_A SINE Alu -15 127 12 1357 285 85 21 chrX 288905 289385 -162310545 + MLT1H LTR MaLR 39 549 0 230 366 74 25 chrX 289386 289588 -162310342 + L2 LINE L2 2467 2678 -636 189 319 7 83 chrX 289756 289900 -162310030 + L2 LINE L2 2952 3084 -188 412 241 107 0 chrX 290782 290894 -162309036 - L2 LINE L2 -5 3308 3185 476 298 24 6 chrX 291068 291236 -162308694 + (CA)n Simple_repeat Simple_repeat 2 172 0 205 167 17 17 chrX 291290 291350 -162308580 + (CA)n Simple_repeat Simple_repeat 1 60 0 336 367 6 22 chrX 291383 291563 -162308367 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 344 360 12 6 chrX 291804 291965 -162307965 + (CA)n Simple_repeat Simple_repeat 1 162 0 27 0 0 0 chrX 292575 292602 -162307328 + AT_rich Low_complexity Low_complexity 1 27 0 1619 173 23 27 chrX 292613 292914 -162307016 + AluJo SINE Alu 1 300 -12 2156 157 3 9 chrX 293033 293423 -162306507 + MLT1B LTR MaLR 4 467 0 1206 187 4 0 chrX 293423 293648 -162306282 + MLT1B LTR MaLR 158 383 -7 2034 128 9 31 chrX 294427 294527 -162305403 + AluJo SINE Alu 1 102 -210 3245 163 15 91 chrX 294527 294799 -162305131 + LTR8 LTR ERV1 2 293 -398 2144 138 0 0 chrX 294799 295110 -162304820 + AluSx SINE Alu 1 311 -1 3245 163 15 91 chrX 295110 295584 -162304346 + LTR8 LTR ERV1 293 691 0 2034 128 9 31 chrX 295584 295802 -162304128 + AluJo SINE Alu 102 312 0 1933 219 31 103 chrX 295866 296485 -162303445 + LTR8 LTR ERV1 1 663 -28 1873 176 0 7 chrX 296485 296786 -162303144 + AluJo SINE Alu 1 299 -13 3400 138 17 87 chrX 296794 296935 -162302995 + LTR9 LTR ERV1 1 150 -462 2733 26 3 0 chrX 296935 297242 -162302688 + AluY SINE Alu 1 308 -3 3400 138 17 87 chrX 297242 297758 -162302172 + LTR9 LTR ERV1 150 612 0 1933 219 31 103 chrX 297758 297874 -162302056 + LTR8 LTR ERV1 670 691 0 1977 133 44 3 chrX 297943 298236 -162301694 - AluJb SINE Alu -7 305 1 1606 174 91 23 chrX 298452 298838 -162301092 + LTR49 LTR ERV1 1 412 -183 1489 127 4 8 chrX 298860 299096 -162300834 + L1PA15 LINE L1 5718 5952 -213 953 161 174 58 chrX 299096 299406 -162300524 + MER4A LTR ERV1 1 346 -318 347 145 40 13 chrX 299487 299563 -162300367 + MER4C LTR ERV1 279 356 -109 1479 108 0 0 chrX 299643 299855 -162300075 + L1PA15 LINE L1 5949 6160 -5 801 209 25 0 chrX 299855 300018 -162299912 + LTR29 LTR ERV1 456 622 0 225 94 0 0 chrX 300040 300072 -162299858 + (A)n Simple_repeat Simple_repeat 1 32 0 1084 89 0 0 chrX 300136 300271 -162299659 + AluSq/x SINE Alu 1 135 -178 2320 118 3 0 chrX 300271 300577 -162299353 + AluSx SINE Alu 1 307 -5 2242 106 0 52 chrX 300863 301192 -162298738 - AluJo SINE Alu 0 312 1 354 98 0 0 chrX 301332 301383 -162298547 + (TG)n Simple_repeat Simple_repeat 1 51 0 344 283 18 53 chrX 302432 302545 -162297385 - L1MC4 LINE L1 -1339 6703 6595 341 296 104 52 chrX 302539 302809 -162297121 + L1ME4a LINE L1 5684 5967 -154 * 336 179 0 64 chrX 302751 302829 -162297101 - L1MCa LINE L1 -4359 2067 1995 * 328 222 33 67 chrX 302811 302901 -162297029 + L1MC4 LINE L1 6614 6700 -1342 * 241 213 27 7 chrX 302903 302986 -162296944 + (TA)n Simple_repeat Simple_repeat 1 90 -63 2303 112 0 0 chrX 302986 303289 -162296641 + AluSg1 SINE Alu 1 303 -6 241 213 27 7 chrX 303289 303355 -162296575 + (TA)n Simple_repeat Simple_repeat 90 153 0 310 301 0 43 chrX 303404 303497 -162296433 + L1MC4 LINE L1 6615 6703 -1339 * 312 295 0 42 chrX 303474 303569 -162296361 + L1MC4 LINE L1 6615 6705 -1337 309 231 18 4 chrX 303572 303803 -162296127 + (TA)n Simple_repeat Simple_repeat 1 234 0 388 271 6 35 chrX 303811 303981 -162295949 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 1709 122 52 15 chrX 305767 306038 -162293892 + AluJo SINE Alu 30 310 -2 1628 163 3 91 chrX 306242 306359 -162293571 + AluJb SINE Alu 1 127 -185 312 27 0 0 chrX 306359 306396 -162293534 + (CA)n Simple_repeat Simple_repeat 2 38 0 1628 163 3 91 chrX 306396 306609 -162293321 + AluJb SINE Alu 127 302 -10 2147 119 3 32 chrX 306629 306941 -162292989 - AluSx SINE Alu -9 303 1 325 337 49 33 chrX 307185 307369 -162292561 - L2 LINE L2 -27 3286 3100 1936 106 14 28 chrX 308134 308416 -162291514 - AluSx SINE Alu -23 289 12 2234 124 3 0 chrX 308416 308723 -162291207 - AluSx SINE Alu -4 308 1 318 231 141 45 chrX 308740 308761 -162291169 + L1ME LINE L1 738 756 -5324 1361 191 33 88 chrX 308761 309091 -162290839 + AluJo SINE Alu 1 312 0 318 231 141 45 chrX 309091 309225 -162290705 + L1ME LINE L1 756 2043 -4037 1588 209 0 16 chrX 309692 309998 -162289932 - AluJo SINE Alu -11 301 1 2329 106 0 0 chrX 310076 310369 -162289561 - AluSq SINE Alu -20 293 1 183 196 0 98 chrX 310493 310544 -162289386 + L2 LINE L2 3000 3045 -227 1043 137 6 12 chrX 310844 311005 -162288925 - FRAM SINE Alu -16 160 1 2378 103 0 0 chrX 311015 311317 -162288613 - AluSq SINE Alu -11 302 1 670 93 9 0 chrX 311587 311695 -162288235 - MLT1B LTR MaLR -123 267 159 1299 140 5 11 chrX 311696 311931 -162287999 - MLT1B LTR MaLR 0 467 158 2122 155 11 12 chrX 311931 312322 -162287608 - MLT1B LTR MaLR 0 467 1 2303 109 0 26 chrX 312374 312686 -162287244 + AluSx SINE Alu 1 304 -8 3952 109 24 82 chrX 313357 314062 -162285868 + MER4A LTR ERV1 1 664 0 2195 107 43 0 chrX 314342 314641 -162285289 - AluSx SINE Alu 0 312 1 294 50 0 0 chrX 314925 314965 -162284965 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 2096 127 3 0 chrX 314965 315249 -162284681 - AluSx SINE Alu -27 285 1 304 302 19 9 chrX 315520 315626 -162284304 + CT-rich Low_complexity Low_complexity 2 108 0 3017 183 19 72 chrX 315863 316590 -162283340 + LTR8 LTR ERV1 3 691 0 4664 85 41 0 chrX 317247 317881 -162282049 - PABL_A LTR ERV1 0 660 1 627 111 0 10 chrX 317919 318018 -162281912 + MER4A LTR ERV1 1 98 -566 419 189 7 45 chrX 318018 318166 -162281764 + MER4A LTR ERV1 261 461 -203 2071 115 35 0 chrX 318206 318494 -162281436 - AluSg SINE Alu -12 298 1 23 33 0 0 chrX 318502 318532 -162281398 + AT_rich Low_complexity Low_complexity 1 30 0 227 30 0 30 chrX 318726 318759 -162281171 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 990 186 4 75 chrX 318907 318995 -162280935 - MER2 DNA MER2_type -135 210 117 2230 123 0 0 chrX 318995 319295 -162280635 + AluSx SINE Alu 1 300 -12 990 186 4 75 chrX 319295 319432 -162280498 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 319532 319553 -162280377 + (TTA)n Simple_repeat Simple_repeat 2 22 0 904 154 28 0 chrX 319593 319736 -162280194 - AluSg/x SINE Alu -13 299 153 263 258 70 8 chrX 319737 319865 -162280065 - L1M4 LINE L1 -1031 5115 4980 2060 111 42 7 chrX 319878 320166 -162279764 + AluSx SINE Alu 1 298 -14 2042 138 13 10 chrX 320370 320681 -162279249 - AluJo SINE Alu 0 312 1 1138 61 0 0 chrX 321031 321163 -162278767 - AluY SINE Alu -179 132 1 1167 175 0 0 chrX 321320 321509 -162278421 - AluJb SINE Alu -1 311 123 1625 61 5 14 chrX 322068 322280 -162277650 - AluYa5 SINE Alu -3 308 99 4052 71 18 7 chrX 322280 322832 -162277098 + LTR6B LTR ERV1 1 558 0 900 40 0 0 chrX 322833 322934 -162276996 - AluYa5 SINE Alu -210 101 1 2443 109 0 0 chrX 322956 323268 -162276662 - AluSx SINE Alu 0 312 1 3784 194 19 4 chrX 323301 324054 -162275876 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 324605 324633 -162275297 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1140 114 0 0 chrX 325041 325087 -162274843 + (TTCC)n Simple_repeat Simple_repeat 1 222 0 1140 114 0 0 chrX 325087 325263 -162274667 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 1179 112 0 0 chrX 325281 325460 -162274470 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 415 216 11 28 chrX 325703 325884 -162274046 + CT-rich Low_complexity Low_complexity 3 180 0 23 54 0 0 chrX 325895 325932 -162273998 + AT_rich Low_complexity Low_complexity 1 37 0 2668 204 31 4 chrX 326209 326754 -162273176 - L1MB5 LINE L1 0 6174 5615 1674 190 3 31 chrX 327788 328109 -162271821 + AluJo SINE Alu 1 312 0 1289 191 22 4 chrX 328539 328811 -162271119 - L1MB5 LINE L1 -89 6085 5809 418 247 159 12 chrX 328957 329127 -162270803 + MLT1J2 LTR MaLR 256 450 0 228 378 56 14 chrX 329403 329546 -162270384 - MIR SINE MIR -11 251 103 2266 131 0 0 chrX 330144 330456 -162269474 - AluSx SINE Alu 0 312 1 3015 143 18 64 chrX 331824 332077 -162267853 + MER39B LTR ERV1 2 265 -388 2619 52 0 3 chrX 332077 332384 -162267546 + AluY SINE Alu 1 306 -5 3015 143 18 64 chrX 332384 332503 -162267427 + MER39B LTR ERV1 265 388 -265 2462 73 0 0 chrX 332503 332791 -162267139 + AluSc SINE Alu 1 288 -21 3015 143 18 64 chrX 332791 333072 -162266858 + MER39B LTR ERV1 388 626 -27 396 59 0 0 chrX 333525 333576 -162266354 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1944 147 0 17 chrX 333576 333876 -162266054 - AluSg SINE Alu -15 295 1 2090 143 0 0 chrX 333876 334183 -162265747 - AluSx SINE Alu -5 307 1 3396 147 11 0 chrX 334501 335044 -162264886 - MER41A LTR ERV1 0 554 6 3172 166 46 88 chrX 335049 335628 -162264302 - LTR39 LTR ERV1 -8 775 238 1960 135 10 10 chrX 335628 335916 -162264014 + AluSx SINE Alu 1 288 -24 3172 166 46 88 chrX 335916 336145 -162263785 - LTR39 LTR ERV1 -545 238 1 334 278 21 10 chrX 336899 336996 -162262934 - MER5A DNA MER1_type -86 103 6 1297 178 9 0 chrX 337005 337235 -162262695 - MLT1B LTR MaLR -1 389 158 1152 175 5 24 chrX 337235 337472 -162262458 - MLT1B LTR MaLR 0 467 159 2197 167 8 13 chrX 337473 337862 -162262068 - MLT1B LTR MaLR 0 390 4 1980 195 4 30 chrX 337891 338185 -162261745 - MLT1B LTR MaLR 0 396 111 2162 69 33 33 chrX 338185 338488 -162261442 - AluY SINE Alu -8 303 1 1980 195 4 30 chrX 338488 338597 -162261333 - MLT1B LTR MaLR -285 111 1 938 97 0 156 chrX 338750 338936 -162260994 - AluSg/x SINE Alu -18 292 136 792 254 46 0 chrX 339634 339831 -162260099 - MER20 DNA MER1_type 0 219 14 602 149 19 7 chrX 339849 340003 -162259927 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 327 194 37 37 chrX 340014 340122 -162259808 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 865 228 47 9 chrX 340139 340350 -162259580 - MER20 DNA MER1_type 0 219 1 337 194 62 131 chrX 340536 340696 -162259234 + MER5A DNA MER1_type 41 189 0 2188 125 0 0 chrX 340940 341252 -162258678 - AluSx SINE Alu 0 312 1 3947 179 80 9 chrX 341487 342258 -162257672 + LTR1B LTR ERV1 1 826 0 1034 187 41 8 chrX 342344 342590 -162257340 - L1MA4 LINE L1 -1 6299 6046 1033 109 14 0 chrX 342886 343033 -162256897 - L1PA10 LINE L1 0 6168 6020 3628 124 26 0 chrX 343293 343833 -162256097 + MER41A LTR ERV1 1 554 0 263 280 17 68 chrX 343961 343986 -162255944 + MIR SINE MIR 111 136 -126 3471 69 21 5 chrX 343986 344423 -162255507 + MLT2A1 LTR ERVL 1 444 0 263 280 17 68 chrX 344423 344515 -162255415 + MIR SINE MIR 136 222 -40 1389 222 0 10 chrX 344546 344857 -162255073 + AluJo SINE Alu 5 312 0 1549 161 3 89 chrX 344857 345066 -162254864 - MER47A DNA MER2_type -2016 307 136 1869 128 24 14 chrX 345066 345363 -162254567 + AluSq SINE Alu 1 300 -13 1549 161 3 89 chrX 345363 345489 -162254441 - MER47A DNA MER2_type -2187 136 1 2150 113 0 0 chrX 347820 348112 -162251818 - AluSx SINE Alu -18 294 3 504 158 0 0 chrX 348170 348265 -162251665 + (TG)n Simple_repeat Simple_repeat 1 95 0 897 230 0 0 chrX 348378 348574 -162251356 + L1MB5 LINE L1 5810 6005 -169 558 191 0 9 chrX 348577 348682 -162251248 + MLT1C LTR MaLR 1 104 -363 464 80 0 148 chrX 348687 348721 -162251209 + MADE1 DNA Mariner 6 21 -59 2126 118 0 0 chrX 348721 349017 -162250913 - AluSg SINE Alu -14 296 1 464 80 0 148 chrX 349017 349070 -162250860 + MADE1 DNA Mariner 21 80 0 1074 158 136 5 chrX 349072 349293 -162250637 + MLT1C LTR MaLR 105 354 -113 1914 117 0 21 chrX 349294 349576 -162250354 + AluSx SINE Alu 1 276 -36 794 155 8 24 chrX 349576 349837 -162250093 + GA-rich Low_complexity Low_complexity 1 257 0 522 254 0 30 chrX 349837 349971 -162249959 + MLT1C LTR MaLR 338 467 0 629 189 13 75 chrX 349985 350101 -162249829 + L1MB5 LINE L1 6026 6131 -43 1664 115 58 0 chrX 350101 350361 -162249569 + AluSx SINE Alu 22 296 -16 629 189 13 75 chrX 350361 350403 -162249527 + L1MB5 LINE L1 6131 6174 0 643 207 191 104 chrX 350548 350762 -162249168 - MER58B DNA MER1_type -2079 341 90 1953 122 3 0 chrX 350762 351050 -162248880 + AluSx SINE Alu 1 289 -23 643 207 191 104 chrX 351050 351144 -162248786 - MER58B DNA MER1_type -2330 90 6 2103 124 0 6 chrX 351539 351853 -162248077 + AluSx SINE Alu 1 312 0 3364 80 0 13 chrX 352060 352510 -162247420 + MLT2A1 LTR ERVL 1 444 0 2044 123 3 0 chrX 353143 353436 -162246494 + AluSx SINE Alu 1 294 -18 225 0 0 0 chrX 353481 353506 -162246424 + (CA)n Simple_repeat Simple_repeat 2 26 0 308 277 50 0 chrX 353737 353856 -162246074 + L1M4 LINE L1 3851 3975 -2171 2321 65 0 19 chrX 353924 354232 -162245698 - AluSc SINE Alu -7 302 1 1095 95 0 0 chrX 354626 354774 -162245156 + AluSc SINE Alu 1 148 -161 276 111 0 0 chrX 356255 356300 -162243630 + (A)n Simple_repeat Simple_repeat 1 45 0 2280 90 0 0 chrX 356621 356921 -162243009 + AluSx SINE Alu 1 300 -12 186 271 21 0 chrX 357054 357102 -162242828 - L2 LINE L2 -4 3309 3261 2122 81 0 52 chrX 358819 359146 -162240784 - AluSp SINE Alu 0 313 2 1862 134 0 13 chrX 359188 359487 -162240443 + AluSx SINE Alu 2 296 -16 1580 141 6 72 chrX 359772 360091 -162239839 + AluJo SINE Alu 1 298 -14 1616 95 9 0 chrX 360204 360426 -162239504 - AluSg/x SINE Alu -17 293 70 2218 103 6 3 chrX 361145 361456 -162238474 + AluSx SINE Alu 1 312 0 2180 97 7 3 chrX 361466 361774 -162238156 + AluSc SINE Alu 1 309 0 243 0 0 0 chrX 362041 362068 -162237862 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2200 83 0 0 chrX 362078 362366 -162237564 - AluY SINE Alu -23 288 1 2473 71 0 0 chrX 362710 363021 -162236909 - AluY SINE Alu 0 311 1 517 289 168 43 chrX 364092 364335 -162235595 + HAL1 LINE L1 881 1092 -3314 2240 116 0 0 chrX 364335 364645 -162235285 + AluSx SINE Alu 1 310 -2 517 289 168 43 chrX 364645 364823 -162235107 + HAL1 LINE L1 1092 3227 -1179 578 218 12 18 chrX 365773 366120 -162233810 + GA-rich Low_complexity Low_complexity 1 344 0 376 226 33 13 chrX 366133 366501 -162233429 + GA-rich Low_complexity Low_complexity 1 375 0 401 41 0 0 chrX 366843 366892 -162233038 - MADE1 DNA Mariner -2 78 30 314 77 19 58 chrX 366887 366939 -162232991 + AluJo SINE Alu 93 142 -160 * 327 107 160 107 chrX 366931 367006 -162232924 - AluJo SINE Alu -130 172 94 * 371 80 0 0 chrX 367002 367052 -162232878 + MADE1 DNA Mariner 30 79 -1 2257 79 7 3 chrX 367328 367633 -162232297 - AluSx SINE Alu -6 306 1 1496 111 0 9 chrX 367981 368198 -162231732 - AluSg/x SINE Alu 0 309 95 21 0 0 0 chrX 368445 368466 -162231464 + AT_rich Low_complexity Low_complexity 1 21 0 2205 101 0 0 chrX 368469 368765 -162231165 + AluY SINE Alu 1 296 -15 1769 161 0 3 chrX 368769 369068 -162230862 - AluJo SINE Alu -12 300 3 974 127 11 14 chrX 369325 369616 -162230314 + THE1C LTR MaLR 1 375 0 1971 110 20 17 chrX 369805 370106 -162229824 + AluSx SINE Alu 1 302 -10 2106 109 30 0 chrX 370445 370747 -162229183 + AluSx SINE Alu 1 311 -1 2170 95 3 0 chrX 371164 371459 -162228471 + AluSq SINE Alu 1 296 -17 2350 72 0 10 chrX 371782 372088 -162227842 - AluY SINE Alu -8 303 1 1938 104 4 0 chrX 373028 373298 -162226632 + AluSx SINE Alu 1 271 -41 180 0 0 0 chrX 373308 373328 -162226602 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 23 42 0 21 chrX 373509 373539 -162226391 + AT_rich Low_complexity Low_complexity 1 31 -16 1532 191 3 10 chrX 373539 373827 -162226103 - AluJo SINE Alu -26 286 1 23 42 0 21 chrX 373827 373844 -162226086 + AT_rich Low_complexity Low_complexity 31 47 0 1987 105 0 33 chrX 373860 374028 -162225902 - AluSx SINE Alu -17 295 140 1967 124 24 0 chrX 374028 374318 -162225612 - AluSx SINE Alu -15 297 1 1987 105 0 33 chrX 374318 374454 -162225476 - AluSx SINE Alu -172 140 1 546 155 0 0 chrX 374900 374997 -162224933 + CT-rich Low_complexity Low_complexity 4 100 0 1367 118 0 15 chrX 376398 376622 -162223308 + AluSq SINE Alu 82 302 0 22 0 0 0 chrX 376798 376820 -162223110 + AT_rich Low_complexity Low_complexity 1 22 0 248 302 77 47 chrX 376882 377345 -162222585 + L1ME4a LINE L1 5481 5962 -159 1554 186 0 39 chrX 377345 377656 -162222274 + AluJo SINE Alu 1 299 -13 248 302 77 47 chrX 377656 377699 -162222231 + L1ME4a LINE L1 5962 6002 -119 2197 109 0 3 chrX 378017 378320 -162221610 + AluSx SINE Alu 3 304 -8 650 209 40 57 chrX 378808 378985 -162220945 - MER45A DNA AcHobo -4 174 1 209 232 20 71 chrX 379463 379562 -162220368 + GA-rich Low_complexity Low_complexity 2 95 0 2407 74 0 3 chrX 380272 380582 -162219348 + AluY SINE Alu 1 309 -2 1846 139 36 0 chrX 380710 381012 -162218918 + AluSq SINE Alu 1 313 0 2110 113 0 3 chrX 381574 381876 -162218054 - AluSx SINE Alu -11 301 1 1164 154 45 136 chrX 382274 382604 -162217326 + AluJo SINE Alu 1 300 -2 2204 103 0 0 chrX 382624 382924 -162217006 + AluSg SINE Alu 1 300 -10 844 231 138 7 chrX 382934 383239 -162216691 + MLT1C LTR MaLR 1 361 -144 1411 254 58 27 chrX 383254 383702 -162216228 + MLT1C LTR MaLR 6 467 0 686 226 6 19 chrX 384088 384247 -162215683 + Tigger1 DNA MER2_type 1 157 -2261 * 845 155 139 0 chrX 384240 384427 -162215503 + Tigger1 DNA MER2_type 2206 2418 0 21 36 0 0 chrX 384554 384582 -162215348 + AT_rich Low_complexity Low_complexity 1 28 0 286 243 108 0 chrX 384585 384696 -162215234 + MER69 DNA AcHobo 2313 2435 -91 512 267 21 15 chrX 385387 385714 -162214216 + (TG)n Simple_repeat Simple_repeat 1 328 0 207 216 21 21 chrX 385716 385813 -162214117 + (TATG)n Simple_repeat Simple_repeat 4 100 0 * 433 232 0 11 chrX 385800 385981 -162213949 + (TG)n Simple_repeat Simple_repeat 2 180 0 450 326 6 6 chrX 386018 386196 -162213734 + (TG)n Simple_repeat Simple_repeat 2 179 0 2240 163 21 74 chrX 386531 386889 -162213041 - L1MA8 LINE L1 -111 6180 5805 2228 99 17 7 chrX 386889 387183 -162212747 - AluSx SINE Alu -15 297 1 2240 163 21 74 chrX 387183 387247 -162212683 - L1MA8 LINE L1 -486 5805 5739 358 247 0 0 chrX 387247 387340 -162212590 - L1MB8 LINE L1 -3 6175 6083 2240 163 21 74 chrX 387340 387473 -162212457 - L1MA8 LINE L1 -552 5739 5653 319 213 11 85 chrX 387492 387586 -162212344 - L1MC4 LINE L1 -1339 6703 6617 306 227 10 82 chrX 387605 387702 -162212228 - L1MC4 LINE L1 -1339 6703 6614 300 239 44 62 chrX 387638 387751 -162212179 + L1MC3 LINE L1 6569 6679 -1106 * 2353 99 0 7 chrX 387770 388073 -162211857 + AluSg SINE Alu 1 301 -9 422 363 0 11 chrX 389184 389366 -162210564 + (TG)n Simple_repeat Simple_repeat 1 180 0 261 296 52 23 chrX 389381 389553 -162210377 + (CATG)n Simple_repeat Simple_repeat 2 178 0 * 337 368 0 16 chrX 389463 389696 -162210234 + (TG)n Simple_repeat Simple_repeat 1 229 0 184 111 44 22 chrX 389696 389741 -162210189 + (CATG)n Simple_repeat Simple_repeat 3 48 0 1955 163 0 7 chrX 391570 391890 -162208040 - AluSx SINE Alu 0 312 4 1325 89 6 0 chrX 391942 392110 -162207820 + AluSg/x SINE Alu 120 288 -22 25 0 0 0 chrX 392110 392135 -162207795 + AT_rich Low_complexity Low_complexity 1 25 0 2415 77 0 3 chrX 392552 392863 -162207067 - AluY SINE Alu -1 310 1 859 235 46 42 chrX 393191 393476 -162206454 + L1MA8 LINE L1 6004 6289 -2 1866 159 0 3 chrX 393926 394216 -162205714 + AluJb SINE Alu 1 289 -23 1992 153 36 0 chrX 394218 394519 -162205411 + AluSx SINE Alu 1 312 0 257 283 35 55 chrX 394793 394938 -162204992 + MER5A DNA MER1_type 22 163 -26 414 0 0 0 chrX 395289 395335 -162204595 + (CA)n Simple_repeat Simple_repeat 2 47 0 2103 261 45 24 chrX 395361 395852 -162204078 + MER82 DNA MER2_type 9 488 -165 2285 91 3 23 chrX 395852 396160 -162203770 + AluSx SINE Alu 1 302 -10 2103 261 45 24 chrX 396160 396200 -162203730 + MER82 DNA MER2_type 488 526 -127 896 153 0 13 chrX 396200 396357 -162203573 + L1PA14 LINE L1 6007 6161 0 2103 261 45 24 chrX 396357 396452 -162203478 + MER82 DNA MER2_type 526 649 -4 348 304 0 65 chrX 396662 396800 -162203130 + L2 LINE L2 2951 3079 -193 520 247 96 14 chrX 396866 397012 -162202918 + MER5B DNA MER1_type 6 163 -15 533 244 0 6 chrX 397647 397819 -162202111 + (TGGG)n Simple_repeat Simple_repeat 2 172 0 894 208 0 6 chrX 397836 398156 -162201774 + (TGGA)n Simple_repeat Simple_repeat 1 317 0 527 195 18 6 chrX 398170 398339 -162201591 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 954 156 0 0 chrX 398355 398606 -162201324 + (TGGA)n Simple_repeat Simple_repeat 1 251 0 218 345 86 0 chrX 398891 399007 -162200923 + MIR SINE MIR 66 191 -71 1467 197 52 7 chrX 399184 399473 -162200457 + AluSx SINE Alu 1 302 -10 2272 118 0 0 chrX 399473 399778 -162200152 + AluSg SINE Alu 1 305 -5 318 87 0 0 chrX 399781 399827 -162200103 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 1093 176 0 11 chrX 399829 400017 -162199913 + AluJo SINE Alu 118 303 -9 1244 208 0 0 chrX 400257 400464 -162199466 + AluJo SINE Alu 84 290 -22 1741 172 57 7 chrX 400472 400769 -162199161 + AluJo SINE Alu 1 312 0 2096 101 0 7 chrX 402272 402550 -162197380 + AluSq SINE Alu 35 310 -3 1442 206 77 3 chrX 402634 402998 -162196932 + MER34B LTR ERV1 148 538 -27 2046 136 0 0 chrX 403017 403303 -162196627 + AluSx SINE Alu 11 296 -16 1192 185 20 0 chrX 403314 403514 -162196416 + AluJo SINE Alu 86 289 -23 1316 175 5 0 chrX 403521 403727 -162196203 + AluSg/x SINE Alu 86 292 -20 2093 124 0 7 chrX 404173 404472 -162195458 - AluSx SINE Alu -15 297 1 602 271 15 20 chrX 404924 405127 -162194803 - MER20 DNA MER1_type 0 219 18 408 103 10 113 chrX 405720 405817 -162194113 + AluSc SINE Alu 221 307 -2 22 35 0 0 chrX 407722 407751 -162192179 + GC_rich Low_complexity Low_complexity 1 29 0 2316 97 7 0 chrX 408939 409247 -162190683 + AluSx SINE Alu 1 310 -2 2402 149 36 24 chrX 409249 409829 -162190101 - MER4E LTR ERV1 -7 759 19 1888 133 0 14 chrX 409829 410108 -162189822 - AluSx SINE Alu -1 311 37 2402 149 36 24 chrX 410108 410128 -162189802 - MER4E LTR ERV1 -747 19 1 4324 47 4 25 chrX 410221 410257 -162189673 - L1PA7 LINE L1 -2 6152 6117 2584 50 0 10 chrX 410257 410558 -162189372 + AluY SINE Alu 1 298 -13 4324 47 4 25 chrX 410558 411076 -162188854 - L1PA7 LINE L1 -37 6117 5610 1947 148 34 0 chrX 412406 412704 -162187226 - AluSq SINE Alu -5 308 1 450 176 0 0 chrX 412813 412898 -162187032 + (CA)n Simple_repeat Simple_repeat 1 85 0 2500 103 0 0 chrX 413147 413459 -162186471 + AluSx SINE Alu 1 312 0 1925 139 43 10 chrX 413489 413790 -162186140 + AluSx SINE Alu 1 311 -1 892 118 0 7 chrX 413859 413995 -162185935 + MSTA LTR MaLR 1 135 -293 391 106 152 0 chrX 413995 414061 -162185869 + MSTA LTR MaLR 353 428 0 1241 81 81 11 chrX 414061 414120 -162185810 + Charlie3 DNA MER1_type 2509 2562 -144 261 0 0 0 chrX 414120 414149 -162185781 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1241 81 81 11 chrX 414149 414274 -162185656 + Charlie3 DNA MER1_type 2562 2706 0 306 298 48 0 chrX 414307 414391 -162185539 + L1MC3 LINE L1 7163 7250 -535 726 172 0 29 chrX 414396 414642 -162185288 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 2309 95 0 10 chrX 414709 415013 -162184917 - AluY SINE Alu -10 301 1 2498 87 3 0 chrX 415013 415322 -162184608 - AluSp SINE Alu -2 311 1 752 203 0 0 chrX 415679 415812 -162184118 - FLAM_A SINE Alu 0 133 1 1242 168 33 5 chrX 415855 416069 -162183861 - AluJo SINE Alu -92 220 1 1323 217 91 29 chrX 416506 416856 -162183074 + MLT1A2 LTR MaLR 1 372 -2 226 267 13 40 chrX 416994 417069 -162182861 + MLT1J2 LTR MaLR 58 130 -320 383 299 7 95 chrX 417076 417380 -162182550 + MLT1J LTR MaLR 171 447 -64 624 263 10 0 chrX 417576 417872 -162182058 + (TGGA)n Simple_repeat Simple_repeat 1 299 0 801 213 0 0 chrX 417922 418197 -162181733 + (TGGA)n Simple_repeat Simple_repeat 1 275 0 630 208 0 0 chrX 418218 418372 -162181558 + (TGGA)n Simple_repeat Simple_repeat 4 157 0 231 125 0 0 chrX 419353 419393 -162180537 + (CA)n Simple_repeat Simple_repeat 1 40 0 2264 105 3 3 chrX 419518 419822 -162180108 + AluSg SINE Alu 1 304 -6 547 283 112 0 chrX 419830 420017 -162179913 - MLT1G1 LTR MaLR -381 214 7 182 326 62 62 chrX 420377 420570 -162179360 - L2 LINE L2 -218 3054 2862 1404 193 12 0 chrX 420578 420821 -162179109 + AluJo SINE Alu 54 299 -13 968 261 94 12 chrX 420836 421166 -162178764 + MLT1H LTR MaLR 185 541 -8 239 229 0 0 chrX 421957 422005 -162177925 + (TG)n Simple_repeat Simple_repeat 1 48 0 2268 109 13 0 chrX 422149 422451 -162177479 + AluSx SINE Alu 1 306 -6 320 305 80 45 chrX 422594 422794 -162177136 - L1MD3 LINE L1 0 7995 7789 2486 96 0 0 chrX 423046 423358 -162176572 + AluSx SINE Alu 1 312 0 1836 141 12 6 chrX 423503 423822 -162176108 + L1PB2 LINE L1 5521 5841 -310 384 163 20 82 chrX 424453 424551 -162175379 - L2 LINE L2 0 3313 3222 2028 273 61 30 chrX 424555 425511 -162174419 - L2 LINE L2 -49 3264 2153 8348 52 15 3 chrX 425639 426774 -162173156 + L1PA13 LINE L1 3682 4830 -1316 5298 113 1 4 chrX 426875 427686 -162172244 + L1PA13 LINE L1 5355 6163 0 1702 81 5 14 chrX 427686 427907 -162172023 + AluY SINE Alu 1 219 -92 3500 148 48 17 chrX 428009 428433 -162171497 + L1M1 LINE L1 2977 3386 -4179 297 0 0 0 chrX 428433 428466 -162171464 + (CA)n Simple_repeat Simple_repeat 2 34 0 3500 148 48 17 chrX 428466 429025 -162170905 + L1M1 LINE L1 3386 3994 -3571 401 155 24 60 chrX 429180 429264 -162170666 + MLT1D LTR MaLR 5 85 -420 662 167 35 7 chrX 429271 429415 -162170515 + MER96B DNA MER1_type? 265 412 -5 356 353 78 7 chrX 429440 429593 -162170337 + L2 LINE L2 3107 3270 -2 307 295 84 0 chrX 429733 429828 -162170102 - L1MC4 LINE L1 -1340 6702 6600 423 123 41 0 chrX 431295 431368 -162168562 - L1MA3 LINE L1 -5 6300 6225 703 289 58 5 chrX 432162 432370 -162167560 + MIR SINE MIR 41 259 -3 367 205 137 87 chrX 432472 432633 -162167297 + L2 LINE L2 2622 2790 -524 8004 61 8 0 chrX 434048 435096 -162164834 + L1P LINE L1 1400 2455 -3691 292 251 128 21 chrX 435208 435403 -162164527 - MLT1C LTR MaLR -147 358 127 1235 196 27 4 chrX 435403 435663 -162164267 - L1MB5 LINE L1 -100 6074 5809 667 297 114 0 chrX 436835 437054 -162162876 - MIR SINE MIR 0 262 19 212 152 15 106 chrX 437060 437126 -162162804 + MIR SINE MIR 101 160 -102 2061 132 3 0 chrX 437406 437716 -162162214 + AluSx SINE Alu 1 311 -1 817 125 8 0 chrX 437718 437846 -162162084 + L1PB2 LINE L1 6023 6151 0 1060 204 103 43 chrX 438157 438219 -162161711 - MLT1C LTR MaLR -6 461 404 2019 125 3 0 chrX 438219 438515 -162161415 + AluSx SINE Alu 4 300 -12 1060 204 103 43 chrX 438515 438781 -162161149 - MLT1C LTR MaLR -63 404 113 1093 171 11 0 chrX 438789 438976 -162160954 + MLT1B LTR MaLR 1 189 -201 700 212 71 119 chrX 438989 439201 -162160729 - MLT1C LTR MaLR -143 324 134 2021 114 0 0 chrX 439201 439490 -162160440 - AluSx SINE Alu -23 289 1 700 212 71 119 chrX 439490 439618 -162160312 - MLT1C LTR MaLR -333 134 1 767 248 109 8 chrX 439628 439933 -162159997 - MLT1C LTR MaLR -122 345 1 262 310 43 17 chrX 439951 440067 -162159863 - LTR33 LTR ERVL -370 151 33 2289 94 0 0 chrX 440142 440441 -162159489 + AluSg SINE Alu 1 299 -11 2242 95 10 0 chrX 441130 441436 -162158494 + AluSx SINE Alu 1 309 -3 670 166 19 39 chrX 442088 442604 -162157326 + (TAGA)n Simple_repeat Simple_repeat 1 800 -25 1649 196 0 0 chrX 442604 442905 -162157025 + AluJo SINE Alu 1 301 -11 670 166 19 39 chrX 442905 442931 -162156999 + (TAGA)n Simple_repeat Simple_repeat 800 825 0 334 247 26 0 chrX 443046 443123 -162156807 - MER20 DNA MER1_type 0 219 141 717 243 17 6 chrX 443149 443322 -162156608 + MLT1B LTR MaLR 293 467 0 2172 93 3 3 chrX 443377 443678 -162156252 - AluSq SINE Alu -12 301 1 649 193 96 0 chrX 443679 443814 -162156116 - MLT1A1 LTR MaLR -208 157 10 1787 157 10 3 chrX 443855 444154 -162155776 - MLT1A1 LTR MaLR -64 301 1 2273 89 0 0 chrX 444433 444735 -162155195 + AluY SINE Alu 1 302 -9 2023 123 3 3 chrX 444928 445230 -162154700 + AluSx SINE Alu 1 302 -10 485 234 0 19 chrX 445717 445824 -162154106 + MER5A DNA MER1_type 1 105 -84 2203 249 38 23 chrX 445904 446430 -162153500 - MER87 LTR ERV1 -7 534 1 233 69 0 0 chrX 446664 446693 -162153237 + (GA)n Simple_repeat Simple_repeat 1 29 0 580 161 27 13 chrX 446693 446842 -162153088 + GA-rich Low_complexity Low_complexity 4 154 0 2108 100 3 7 chrX 447426 447726 -162152204 + AluSx SINE Alu 6 304 -8 1195 168 21 66 chrX 447896 448027 -162151903 - L1MA8 LINE L1 0 6291 6156 2015 122 0 0 chrX 448027 448322 -162151608 - AluY SINE Alu -16 295 1 1195 168 21 66 chrX 448322 448476 -162151454 - L1MA8 LINE L1 -135 6156 6019 2025 227 92 50 chrX 448487 448632 -162151298 - MER50 LTR ERV1 -7 727 589 2179 106 0 3 chrX 448632 448934 -162150996 - AluSg SINE Alu -9 301 1 2025 227 92 50 chrX 448934 449360 -162150570 - MER50 LTR ERV1 -145 589 119 1743 100 104 11 chrX 449360 449629 -162150301 - AluSg1 SINE Alu -15 294 1 2025 227 92 50 chrX 449629 449753 -162150177 - MER50 LTR ERV1 -615 119 2 1031 165 11 21 chrX 449753 449941 -162149989 - L1MA8 LINE L1 -276 6015 5830 633 110 0 0 chrX 449945 450036 -162149894 - AluSg/x SINE Alu -6 304 214 1955 96 0 7 chrX 450370 450642 -162149288 + AluSx SINE Alu 43 312 0 730 84 0 0 chrX 451081 451176 -162148754 + AluY SINE Alu 2 96 -215 632 105 62 18 chrX 451279 451788 -162148142 + GA-rich Low_complexity Low_complexity 1 531 0 1870 155 153 27 chrX 451895 452307 -162147623 + MER4C LTR ERV1 1 464 -1 21 0 0 0 chrX 452449 452470 -162147460 + GC_rich Low_complexity Low_complexity 1 21 0 407 223 9 0 chrX 453067 453179 -162146751 + (TGGA)n Simple_repeat Simple_repeat 4 116 0 180 368 69 11 chrX 453306 453393 -162146537 - MIR3 SINE MIR -114 94 3 412 250 0 17 chrX 453662 453778 -162146152 + AluSp SINE Alu 2 115 -198 344 186 0 0 chrX 453778 453837 -162146093 + MLT1C LTR MaLR 357 415 -52 1664 161 4 0 chrX 453848 454127 -162145803 - AluSx SINE Alu -29 283 4 817 125 8 0 chrX 454501 454629 -162145301 - L1PB2 LINE L1 0 6151 6023 2029 134 0 6 chrX 454631 454944 -162144986 - AluSx SINE Alu -1 311 1 514 208 102 19 chrX 455477 455646 -162144284 - MER39 LTR ERV1 -1 687 471 705 133 0 9 chrX 455646 455773 -162144157 - AluSx SINE Alu 0 309 189 685 89 11 0 chrX 455770 455860 -162144070 - AluSx SINE Alu -205 107 17 * 842 197 40 100 chrX 455860 455920 -162144010 - MER39 LTR ERV1 -178 529 467 4376 69 9 0 chrX 455920 456468 -162143462 - MER41A LTR ERV1 -1 553 1 842 197 40 100 chrX 456468 456706 -162143224 - MER39 LTR ERV1 -240 467 249 242 196 20 0 chrX 456719 456770 -162143160 - MER39 LTR ERV1 -655 52 1 1701 119 4 8 chrX 457130 457381 -162142549 - L1P4 LINE L1 -575 5593 5344 344 221 0 0 chrX 457382 457459 -162142471 - MER4D LTR ERV1 -512 360 284 1831 145 20 7 chrX 457463 457767 -162142163 - AluSx SINE Alu -4 308 1 874 126 33 44 chrX 457771 457954 -162141976 - Tigger7 DNA MER2_type -92 2395 2215 1716 153 78 54 chrX 458010 458077 -162141853 - MSTA LTR MaLR -5 423 359 1995 85 11 7 chrX 458077 458358 -162141572 + AluSx SINE Alu 1 282 -30 180 0 0 0 chrX 458361 458381 -162141549 + (CA)n Simple_repeat Simple_repeat 1 20 0 1716 153 78 54 chrX 458381 458681 -162141249 - MSTA LTR MaLR -70 358 43 1149 107 24 0 chrX 458781 458949 -162140981 + AluSg/x SINE Alu 136 307 -5 2036 110 3 0 chrX 459373 459664 -162140266 - AluSx SINE Alu -18 294 3 290 315 153 20 chrX 459908 460111 -162139819 + MARNA DNA Mariner 104 333 -253 2242 107 3 0 chrX 461130 461440 -162138490 - AluSx SINE Alu -1 311 1 254 136 0 0 chrX 461692 461736 -162138194 - Alu SINE Alu -2 298 255 756 233 3 6 chrX 461836 462195 -162137735 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 368 292 21 108 chrX 462388 462524 -162137406 - MLT1J LTR MaLR -64 447 338 2185 78 0 0 chrX 462524 462842 -162137088 + AluSg SINE Alu 1 318 0 368 292 21 108 chrX 462842 462944 -162136986 - MLT1J LTR MaLR -173 338 229 180 111 0 0 chrX 462944 462971 -162136959 + (A)n Simple_repeat Simple_repeat 1 27 0 355 302 92 83 chrX 463961 464518 -162135412 + L1MB5 LINE L1 3884 4445 -1701 2053 136 3 0 chrX 464553 464862 -162135068 + AluSx SINE Alu 1 310 -2 825 119 0 0 chrX 465192 465310 -162134620 + AluSq SINE Alu 41 158 -155 375 345 58 11 chrX 465465 465656 -162134274 + L1MB5 LINE L1 5481 5680 -441 659 256 17 0 chrX 466328 466500 -162133430 - MER45A DNA AcHobo -3 175 1 1835 153 0 25 chrX 466569 466889 -162133041 + AluSx SINE Alu 1 312 0 2047 202 8 0 chrX 467329 467720 -162132210 + L1MB5 LINE L1 5745 6138 -36 2403 76 0 0 chrX 467724 468028 -162131902 + AluSg SINE Alu 1 304 -6 1394 182 14 17 chrX 468038 468334 -162131596 + AluJo SINE Alu 1 295 -17 218 237 31 31 chrX 469307 469404 -162130526 + GA-rich Low_complexity Low_complexity 2 98 0 832 145 0 22 chrX 469653 469791 -162130139 + AluJo SINE Alu 1 135 -177 327 161 0 0 chrX 470785 470841 -162129089 + L1MA7 LINE L1 6233 6288 -3 1933 104 0 0 chrX 470850 471118 -162128812 + AluSg SINE Alu 39 306 -4 897 254 40 40 chrX 471302 471601 -162128329 + Charlie4a DNA MER1_type 12 310 -198 214 245 0 47 chrX 472744 472850 -162127080 + C-rich Low_complexity Low_complexity 4 104 0 1953 112 0 3 chrX 472950 473236 -162126694 + AluSx SINE Alu 14 298 -14 181 0 33 33 chrX 473238 473268 -162126662 + (TATAA)n Simple_repeat Simple_repeat 4 33 0 2278 75 0 7 chrX 473757 474063 -162125867 + AluY SINE Alu 1 304 -7 1478 198 0 24 chrX 474262 474555 -162125375 - AluJb SINE Alu -19 293 8 237 232 0 0 chrX 474604 474673 -162125257 + GA-rich Low_complexity Low_complexity 2 70 0 309 236 28 28 chrX 474749 474855 -162125075 - MLT1J2 LTR MaLR 0 450 345 1240 202 12 62 chrX 475266 475314 -162124616 + L1MB8 LINE L1 5569 5618 -560 2123 114 91 26 chrX 475314 475656 -162124274 - THE1B LTR MaLR 0 364 1 1240 202 12 62 chrX 475656 475927 -162124003 + L1MB8 LINE L1 5618 5873 -305 1689 163 0 43 chrX 475927 476253 -162123677 + AluSx SINE Alu 1 312 0 1240 202 12 62 chrX 476253 476268 -162123662 + L1MB8 LINE L1 5873 5887 -291 274 109 43 0 chrX 476312 476358 -162123572 - MER34C LTR ERV1 -533 52 5 * 354 123 46 0 chrX 476326 476391 -162123539 - MER34C LTR ERV1 -512 73 6 382 275 50 102 chrX 477332 477632 -162122298 - LTR16C LTR ERVL -14 477 153 2392 156 51 10 chrX 477632 478043 -162121887 - MSTA LTR MaLR 0 428 1 382 275 50 102 chrX 478043 478148 -162121782 - LTR16C LTR ERVL -338 153 44 3741 121 23 62 chrX 478445 478558 -162121372 - MER41B LTR ERV1 0 635 519 1689 199 0 0 chrX 478558 478864 -162121066 + AluJo SINE Alu 1 306 -6 3741 121 23 62 chrX 478864 479411 -162120519 - MER41B LTR ERV1 -116 519 1 2268 97 0 3 chrX 479424 479732 -162120198 + AluSq SINE Alu 1 307 -6 1475 231 89 11 chrX 479775 480156 -162119774 + MER87 LTR ERV1 1 411 -130 216 0 0 0 chrX 480298 480322 -162119608 + (TTC)n Simple_repeat Simple_repeat 1 24 0 2186 92 16 0 chrX 480327 480632 -162119298 - AluSg SINE Alu 0 310 1 792 234 8 3 chrX 481534 481930 -162118000 + (TCCA)n Simple_repeat Simple_repeat 1 398 0 724 181 6 6 chrX 481947 482124 -162117806 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 257 322 128 19 chrX 482881 483092 -162116838 + MIR SINE MIR 15 248 -14 2182 121 0 3 chrX 483387 483685 -162116245 + AluSg1 SINE Alu 1 297 -12 746 176 12 44 chrX 483844 484071 -162115859 - L1M4c LINE L1 -4768 1616 1356 1903 185 83 46 chrX 484426 484906 -162115024 + MLT1D LTR MaLR 2 499 -6 2274 97 0 13 chrX 485755 486063 -162113867 - AluY SINE Alu -7 304 1 1403 96 0 5 chrX 486724 486903 -162113027 - AluSg/x SINE Alu -6 306 127 2228 102 7 0 chrX 486903 487187 -162112743 - AluSx SINE Alu -26 286 1 1619 260 48 9 chrX 487438 487877 -162112053 + MLT1D LTR MaLR 1 456 -49 827 181 0 0 chrX 488029 488162 -162111768 - FLAM_C SINE Alu 0 133 1 1888 176 3 0 chrX 488168 488474 -162111456 - AluSx SINE Alu -5 307 1 1720 120 0 4 chrX 489088 489321 -162110609 + AluSg SINE Alu 4 235 -75 1223 123 24 0 chrX 489421 489611 -162110319 + AluSg/x SINE Alu 110 303 0 2340 94 3 0 chrX 490341 490639 -162109291 + AluSp SINE Alu 1 299 -14 307 286 0 0 chrX 490822 490899 -162109031 + (TG)n Simple_repeat Simple_repeat 2 78 0 558 205 3 30 chrX 490904 491239 -162108691 + (TATG)n Simple_repeat Simple_repeat 1 325 0 208 234 0 37 chrX 491263 491370 -162108560 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1702 160 79 18 chrX 491764 492078 -162107852 + MER65A LTR ERV1 82 420 -25 1995 142 80 17 chrX 492078 492480 -162107450 - MSTA LTR MaLR 0 428 2 1702 160 79 18 chrX 492480 492508 -162107422 + MER65A LTR ERV1 420 445 0 319 230 12 21 chrX 493277 493619 -162106311 + (TCTA)n Simple_repeat Simple_repeat 1 338 0 367 170 22 39 chrX 493648 493830 -162106100 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2363 102 0 0 chrX 494131 494434 -162105496 - AluSx SINE Alu -9 303 1 2364 94 3 0 chrX 494444 494742 -162105188 - AluSp SINE Alu -14 299 1 1248 110 0 0 chrX 495605 495769 -162104161 - AluSg/x SINE Alu -15 295 132 2237 111 0 3 chrX 495769 496075 -162103855 - AluSx SINE Alu -7 305 1 3238 169 9 0 chrX 496192 496732 -162103198 + L1PA16 LINE L1 5584 6128 -38 280 243 9 9 chrX 496878 496985 -162102945 + (TATATG)n Simple_repeat Simple_repeat 1 107 0 239 228 22 65 chrX 496989 497081 -162102849 - L1MC4 LINE L1 -1340 6702 6615 258 300 0 0 chrX 497083 497153 -162102777 + (TA)n Simple_repeat Simple_repeat 1 70 0 272 226 145 70 chrX 497254 497440 -162102490 - L2 LINE L2 -17 3296 3097 1700 204 14 47 chrX 497479 497906 -162102024 + L1M4 LINE L1 5377 5789 -389 310 278 41 0 chrX 498515 498612 -162101318 + MER34C LTR ERV1 1 101 -484 319 198 33 22 chrX 498708 498799 -162101131 - MER90 LTR ERV1 -477 98 7 742 245 58 5 chrX 499334 499542 -162100388 - MLT1D LTR MaLR -286 219 1 198 318 37 28 chrX 500313 500420 -162099510 + L2 LINE L2 2930 3037 -235 192 77 0 0 chrX 500846 500872 -162099058 + (GA)n Simple_repeat Simple_repeat 1 26 0 2287 95 7 0 chrX 501954 502248 -162097682 + AluSg SINE Alu 1 296 -14 2125 109 6 40 chrX 502488 502809 -162097121 + AluSx SINE Alu 1 310 -2 331 328 85 17 chrX 502934 503288 -162096642 + L1ME4a LINE L1 5491 5868 -253 646 274 12 12 chrX 504059 504227 -162095703 - MER45A DNA AcHobo -3 175 8 2314 94 0 10 chrX 505035 505333 -162094597 - AluSg SINE Alu -15 295 1 22 70 0 0 chrX 505451 505494 -162094436 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chrX 505874 505897 -162094033 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 29 47 0 0 chrX 506700 506743 -162093187 + AT_rich Low_complexity Low_complexity 1 43 0 2198 90 3 21 chrX 506819 507143 -162092787 + AluSx SINE Alu 1 319 0 537 328 6 0 chrX 508005 508179 -162091751 - MER45A DNA AcHobo -3 175 1 254 132 19 0 chrX 508696 508749 -162091181 + GA-rich Low_complexity Low_complexity 1 54 0 1712 170 7 3 chrX 509226 509520 -162090410 - AluJb SINE Alu -17 295 1 268 321 101 26 chrX 510717 511063 -162088867 + L1ME LINE L1 5490 5861 -260 618 273 17 0 chrX 511842 512014 -162087916 - MER45A DNA AcHobo -3 175 1 2092 126 7 0 chrX 512813 513114 -162086816 - AluSp SINE Alu -10 303 1 25 0 0 0 chrX 513254 513279 -162086651 + GC_rich Low_complexity Low_complexity 1 25 0 2522 60 3 3 chrX 513732 514034 -162085896 + AluSp SINE Alu 1 302 -11 1652 178 3 30 chrX 514038 514341 -162085589 + AluJb SINE Alu 2 296 -16 3654 130 42 18 chrX 514961 515412 -162084518 + LTR9 LTR ERV1 1 471 -141 189 0 0 0 chrX 515412 515433 -162084497 + (TC)n Simple_repeat Simple_repeat 2 22 0 3654 130 42 18 chrX 515433 515579 -162084351 + LTR9 LTR ERV1 471 612 0 3852 61 15 81 chrX 515745 516337 -162083593 + MER41A LTR ERV1 2 554 0 2199 109 0 3 chrX 516830 517124 -162082806 + AluSx SINE Alu 16 308 -4 2478 126 37 0 chrX 517124 517506 -162082424 + L1PA11 LINE L1 5779 6174 0 1252 178 50 27 chrX 517521 517779 -162082151 + LTR49 LTR ERV1 98 361 -234 567 177 48 16 chrX 517800 517924 -162082006 - AluJb SINE Alu 0 312 185 22 0 0 0 chrX 517927 517949 -162081981 + AT_rich Low_complexity Low_complexity 1 22 0 280 229 0 0 chrX 517966 518027 -162081903 + AluS SINE Alu 5 65 -238 982 185 0 11 chrX 518390 518574 -162081356 - AluJb SINE Alu -120 192 11 2174 117 0 22 chrX 518603 518920 -162081010 - AluSx SINE Alu 0 312 3 377 198 25 0 chrX 519144 519225 -162080705 + MER3 DNA MER1_type 126 208 -1 1374 157 13 0 chrX 519263 519493 -162080437 - MLT1B LTR MaLR 0 390 158 2082 175 26 8 chrX 519493 519876 -162080054 - MLT1B LTR MaLR 0 390 1 246 62 0 0 chrX 520256 520288 -162079642 + (CG)n Simple_repeat Simple_repeat 2 33 0 * 276 30 0 0 chrX 520287 520320 -162079610 + (CA)n Simple_repeat Simple_repeat 1 33 0 2282 93 3 0 chrX 520423 520713 -162079217 - AluSc SINE Alu -10 299 9 2429 81 0 7 chrX 521413 521722 -162078208 - AluSc SINE Alu -2 307 1 2303 100 0 3 chrX 522394 522695 -162077235 + AluSx SINE Alu 1 300 -12 303 256 53 15 chrX 522695 522828 -162077102 - MER33 DNA MER1_type -19 305 168 42 77 0 0 chrX 522828 522919 -162077011 + AT_rich Low_complexity Low_complexity 1 91 0 267 284 11 17 chrX 522982 523158 -162076772 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 68 0 0 chrX 523177 523236 -162076694 + AT_rich Low_complexity Low_complexity 1 59 0 384 227 34 17 chrX 523263 523349 -162076581 + (TA)n Simple_repeat Simple_repeat 1 84 -95 2289 105 10 0 chrX 523349 523643 -162076287 + AluSp SINE Alu 1 297 -16 384 227 34 17 chrX 523643 523732 -162076198 + (TA)n Simple_repeat Simple_repeat 84 179 0 266 286 19 0 chrX 523760 523921 -162076009 + (TA)n Simple_repeat Simple_repeat 2 165 0 495 185 82 86 chrX 523974 524156 -162075774 - MER33 DNA MER1_type -2353 232 50 2277 187 9 12 chrX 524156 524583 -162075347 + MSTB LTR MaLR 1 426 0 495 185 82 86 chrX 524583 524632 -162075298 - MER33 DNA MER1_type -2535 50 2 2415 77 0 0 chrX 525021 525318 -162074612 + AluY SINE Alu 1 297 -14 625 161 100 0 chrX 525402 525532 -162074398 - L1MC3 LINE L1 -195 7590 7448 306 121 35 17 chrX 525559 525617 -162074313 - MSTB1 LTR MaLR -43 389 331 720 114 9 0 chrX 525711 525816 -162074114 - MSTB1 LTR MaLR 0 432 327 1551 180 200 130 chrX 525818 526073 -162073857 - L1MC3 LINE L1 -340 7445 7209 240 284 12 25 chrX 526073 526154 -162073776 - MLT1F1 LTR MaLR -453 114 35 1551 180 200 130 chrX 526154 526503 -162073427 - L1MC3 LINE L1 -576 7209 6713 1266 233 38 24 chrX 526537 526829 -162073101 + AluJo SINE Alu 1 296 -6 471 214 0 0 chrX 526832 526916 -162073014 + AluJo/FRAM SINE Alu 207 290 -22 243 88 0 0 chrX 528440 528474 -162071456 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2286 75 0 4 chrX 528474 528755 -162071175 - AluSx SINE Alu -32 280 1 2275 84 3 32 chrX 529180 529490 -162070440 - AluSx SINE Alu -7 305 5 1608 181 34 27 chrX 529737 529868 -162070062 + AluJb SINE Alu 6 135 -177 2255 117 0 0 chrX 529868 530175 -162069755 + AluSx SINE Alu 2 308 -4 1608 181 34 27 chrX 530175 530335 -162069595 + AluJb SINE Alu 135 299 -13 282 320 19 77 chrX 530581 530737 -162069193 + MIR SINE MIR 20 166 -96 2191 113 0 35 chrX 530782 531100 -162068830 + AluSx SINE Alu 1 307 -5 2604 86 23 16 chrX 531486 531872 -162068058 + MLT2A1 LTR ERVL 1 389 -55 192 77 0 0 chrX 531872 531898 -162068032 + (TA)n Simple_repeat Simple_repeat 1 26 0 1655 164 32 11 chrX 532268 532579 -162067351 - AluJo SINE Alu 0 317 1 2331 95 3 0 chrX 532794 533090 -162066840 + AluSx SINE Alu 1 297 -15 210 91 0 0 chrX 533106 533139 -162066791 + (CA)n Simple_repeat Simple_repeat 2 34 0 210 258 61 0 chrX 533650 533716 -162066214 - MIR SINE MIR -117 145 76 496 248 10 2 chrX 533848 534262 -162065668 + (TCCA)n Simple_repeat Simple_repeat 1 417 0 350 281 0 6 chrX 534286 534457 -162065473 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 182 266 78 0 chrX 534502 534566 -162065364 + L2 LINE L2 3242 3310 -3 586 227 8 0 chrX 535593 535721 -162064209 - AluJb SINE Alu -7 305 177 627 144 8 23 chrX 535748 535880 -162064050 + CT-rich Low_complexity Low_complexity 3 132 0 909 145 0 0 chrX 535882 536013 -162063917 - FLAM_C SINE Alu -2 131 1 322 287 53 0 chrX 536412 536506 -162063424 + MER5A DNA MER1_type 11 109 -80 2302 105 0 0 chrX 537590 537884 -162062046 + AluSp SINE Alu 2 295 -18 242 357 31 16 chrX 538179 538308 -162061622 - MIR SINE MIR -58 150 20 248 174 43 0 chrX 538361 538407 -162061523 + MLT1D LTR MaLR 1 48 -457 314 125 42 0 chrX 538410 538458 -162061472 + MLT1D LTR MaLR 1 50 -455 284 106 64 0 chrX 538459 538506 -162061424 + MLT1D LTR MaLR 1 50 -455 339 102 20 0 chrX 538507 538556 -162061374 + MLT1D LTR MaLR 1 50 -455 294 143 20 0 chrX 538557 538606 -162061324 + MLT1D LTR MaLR 1 50 -455 307 122 20 0 chrX 538607 538656 -162061274 + MLT1D LTR MaLR 1 50 -455 331 102 20 0 chrX 538657 538706 -162061224 + MLT1D LTR MaLR 1 50 -455 318 104 42 0 chrX 538707 538755 -162061175 + MLT1D LTR MaLR 1 50 -455 2006 203 26 39 chrX 538756 539264 -162060666 + MLT1D LTR MaLR 1 501 -4 2865 62 3 3 chrX 539290 539645 -162060285 + THE1A LTR MaLR 1 355 0 2950 115 2 5 chrX 539650 540092 -162059838 + MER41A LTR ERV1 1 441 -113 2332 85 3 0 chrX 540092 540386 -162059544 - AluSc SINE Alu -9 300 6 2234 119 0 10 chrX 540695 541007 -162058923 + AluSx SINE Alu 4 312 0 272 286 45 52 chrX 541309 541463 -162058467 - MER103 DNA DNA 0 166 14 1901 161 3 10 chrX 541755 542060 -162057870 - AluJb SINE Alu -9 303 1 1798 115 4 4 chrX 542195 542447 -162057483 + AluSq SINE Alu 1 252 -61 1109 271 47 11 chrX 542642 543003 -162056927 - MSTB LTR MaLR -52 374 1 1866 185 34 27 chrX 543208 543755 -162056175 - MLT2A2 LTR ERVL 0 554 1 3124 169 4 24 chrX 543807 544345 -162055585 - MER1A DNA MER1_type 0 527 1 509 313 6 6 chrX 544507 544670 -162055260 - MER63A DNA MER1_type -4 206 44 2064 136 0 0 chrX 545398 545734 -162054196 - AluSx SINE Alu 0 336 1 2249 92 3 7 chrX 545740 546045 -162053885 - AluSx SINE Alu -6 306 3 257 315 167 6 chrX 546330 546492 -162053438 + MARNA DNA Mariner 146 333 -253 2230 105 7 0 chrX 547682 547977 -162051953 - AluSx SINE Alu -12 300 4 825 122 32 0 chrX 547991 548114 -162051816 - FLAM_C SINE Alu -2 131 5 2102 141 0 3 chrX 548517 548821 -162051109 + AluSx SINE Alu 1 303 -9 288 0 0 0 chrX 549001 549033 -162050897 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 283 69 69 chrX 549109 549282 -162050648 + MIR SINE MIR 90 262 0 2388 100 0 3 chrX 549526 549837 -162050093 + AluSg SINE Alu 1 310 0 300 248 116 33 chrX 549997 550118 -162049812 + MIR SINE MIR 23 153 -55 56 61 0 0 chrX 552898 552996 -162046934 + GC_rich Low_complexity Low_complexity 1 98 0 342 283 103 68 chrX 553029 553457 -162046473 - L1M2 LINE L1 -5651 1198 756 192 97 0 0 chrX 553696 553727 -162046203 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 220 0 0 chrX 555044 555094 -162044836 + (TG)n Simple_repeat Simple_repeat 1 50 0 293 219 27 0 chrX 555498 555571 -162044359 + LTR52 LTR ERVL 1 75 -346 685 182 157 6 chrX 555626 555785 -162044145 + MSTA LTR MaLR 1 183 -245 702 237 22 73 chrX 555807 555881 -162044049 + LTR52 LTR ERVL 83 159 -262 2410 102 0 0 chrX 555881 556185 -162043745 + AluSx SINE Alu 1 304 -8 702 237 22 73 chrX 556185 556384 -162043546 + LTR52 LTR ERVL 159 342 -79 1626 189 20 14 chrX 556500 556797 -162043133 + AluJo SINE Alu 7 305 -7 2350 116 0 0 chrX 556859 557169 -162042761 - AluSx SINE Alu -2 310 1 2438 94 0 3 chrX 557580 557888 -162042042 - AluSq SINE Alu -6 307 1 1928 169 10 3 chrX 558367 558674 -162041256 - AluJb SINE Alu -3 309 1 2189 99 0 17 chrX 558750 559042 -162040888 - AluSg SINE Alu 0 310 24 1840 165 12 38 chrX 559179 559536 -162040394 + L1MA4 LINE L1 5896 6260 -40 1357 64 0 6 chrX 559536 559706 -162040224 + L1PA8 LINE L1 5987 6158 -14 261 83 0 0 chrX 559708 559744 -162040186 + (TA)n Simple_repeat Simple_repeat 2 37 0 1840 165 12 38 chrX 559744 559783 -162040147 + L1MA4 LINE L1 6261 6285 -15 3039 131 50 84 chrX 559784 559992 -162039938 + MER4A LTR ERV1 1 215 -385 2200 122 0 16 chrX 559992 560303 -162039627 + AluSq SINE Alu 4 309 -4 3039 131 50 84 chrX 560303 560711 -162039219 + MER4A LTR ERV1 215 596 -4 1277 168 112 56 chrX 561001 561269 -162038661 - AluJb SINE Alu -29 283 1 2021 112 0 69 chrX 561411 561737 -162038193 + AluSx SINE Alu 1 305 0 4936 91 1 24 chrX 561811 562268 -162037662 + PABL_B LTR ERV1 1 440 -227 2042 100 10 45 chrX 562268 562577 -162037353 - AluSx SINE Alu -14 298 1 4936 91 1 24 chrX 562577 562801 -162037129 + PABL_B LTR ERV1 440 667 0 2775 166 100 27 chrX 563137 563856 -162036074 + LTR1B LTR ERV1 1 754 -31 305 119 40 68 chrX 563903 563973 -162035957 + (TCTA)n Simple_repeat Simple_repeat 3 73 -101 2277 119 0 0 chrX 563973 564268 -162035662 + AluSg SINE Alu 2 296 -14 305 119 40 68 chrX 564268 564374 -162035556 + (TCTA)n Simple_repeat Simple_repeat 73 174 0 307 143 0 57 chrX 564383 564453 -162035477 + MLT2B1 LTR ERVL 455 520 0 2367 103 7 0 chrX 564657 564967 -162034963 + AluSq SINE Alu 1 312 -1 2201 125 3 3 chrX 565258 565569 -162034361 - AluSx SINE Alu -1 311 1 1543 177 7 35 chrX 565690 565811 -162034119 + AluJb SINE Alu 1 124 -188 1988 102 18 32 chrX 565811 566096 -162033834 - AluSx SINE Alu -9 303 23 1543 177 7 35 chrX 566096 566257 -162033673 + AluJb SINE Alu 124 275 -37 310 355 128 21 chrX 566283 566573 -162033357 + HAL1 LINE L1 981 1301 -1206 1635 165 4 0 chrX 567076 567331 -162032599 + AluJo SINE Alu 11 266 -46 1496 86 4 78 chrX 567463 567695 -162032235 + AluSg/x SINE Alu 84 298 -14 870 132 0 0 chrX 567697 567818 -162032112 - AluJo/FLAM SINE Alu -189 123 3 2353 99 0 0 chrX 567921 568225 -162031705 + AluSg SINE Alu 1 304 -6 838 237 8 42 chrX 568231 568467 -162031463 - L1MC3 LINE L1 -421 7364 7137 2022 135 4 0 chrX 568645 568962 -162030968 - AluSx SINE Alu 0 319 2 22 56 0 0 chrX 569100 569136 -162030794 + AT_rich Low_complexity Low_complexity 1 36 0 2276 145 0 0 chrX 569308 569619 -162030311 - AluSx SINE Alu 0 312 2 443 301 77 85 chrX 569652 570326 -162029604 + L1ME LINE L1 3 671 -5399 827 172 0 13 chrX 570521 570748 -162029182 + (ATG)n Simple_repeat Simple_repeat 1 224 0 1083 130 0 8 chrX 570767 571132 -162028798 + (ATG)n Simple_repeat Simple_repeat 1 361 0 2392 107 0 0 chrX 571347 571657 -162028273 + AluSx SINE Alu 1 310 -2 2011 131 37 67 chrX 572437 572759 -162027171 + THE1B LTR MaLR 1 313 -51 2059 124 0 3 chrX 572759 573078 -162026852 + AluSx SINE Alu 1 318 0 2011 131 37 67 chrX 573078 573128 -162026802 + THE1B LTR MaLR 313 363 -1 309 189 33 56 chrX 573165 573255 -162026675 - L1MB3 LINE L1 -5 6178 6091 354 295 108 39 chrX 573789 574176 -162025754 + LTR33 LTR ERVL 89 502 -19 1833 126 52 37 chrX 574284 574633 -162025297 - THE1B LTR MaLR -10 354 1 238 292 10 31 chrX 575419 575515 -162024415 - Charlie4 DNA MER1_type -1764 197 104 1886 164 0 3 chrX 575755 576041 -162023889 - AluSx SINE Alu -25 287 3 2416 87 0 13 chrX 576365 576677 -162023253 - AluSc SINE Alu -1 308 1 2155 94 0 11 chrX 576686 577013 -162022917 - AluSc SINE Alu 0 324 1 241 164 343 0 chrX 577218 577291 -162022639 + MER4A LTR ERV1 1 98 -566 1563 141 9 29 chrX 577291 577624 -162022306 + MER4A LTR ERV1 261 645 -19 645 201 113 2 chrX 577645 577864 -162022066 + L1MC3 LINE L1 7535 7993 -2 2218 125 6 3 chrX 577956 578267 -162021663 + AluSx SINE Alu 1 312 0 311 202 0 8 chrX 579001 579122 -162020808 + CT-rich Low_complexity Low_complexity 1 119 0 1688 183 0 14 chrX 579126 579410 -162020520 - AluJo SINE Alu -32 280 1 1974 157 27 76 chrX 579834 580130 -162019800 - MSTA LTR MaLR -4 424 156 2219 115 0 0 chrX 580130 580425 -162019505 + AluSq SINE Alu 1 295 -18 1974 157 27 76 chrX 580425 580574 -162019356 - MSTA LTR MaLR -272 156 1 2283 97 0 10 chrX 580619 580919 -162019011 - AluY SINE Alu -14 297 1 877 173 0 0 chrX 581251 581384 -162018546 + FLAM_C SINE Alu 1 133 0 365 39 0 19 chrX 581408 581460 -162018470 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 309 248 31 23 chrX 581462 581591 -162018339 + (TTTG)n Simple_repeat Simple_repeat 3 132 0 231 215 69 0 chrX 581519 581663 -162018267 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 1064 243 7 95 chrX 582230 582647 -162017283 - MLT1E2 LTR MaLR -136 490 137 2041 112 0 0 chrX 582647 582949 -162016981 + AluSx SINE Alu 14 315 0 1064 243 7 95 chrX 582949 583072 -162016858 - MLT1E2 LTR MaLR -489 137 5 2181 126 0 3 chrX 583746 584048 -162015882 + AluSx SINE Alu 1 301 -11 1017 154 0 0 chrX 585001 585150 -162014780 + AluJb SINE Alu 159 307 -5 249 57 0 0 chrX 585185 585220 -162014710 + (GA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chrX 585220 585256 -162014674 + (TG)n Simple_repeat Simple_repeat 2 37 0 1223 116 0 0 chrX 585552 585716 -162014214 + AluSg/x SINE Alu 135 298 -12 195 42 0 0 chrX 585825 585849 -162014081 + (CA)n Simple_repeat Simple_repeat 1 24 0 2177 104 10 3 chrX 585909 586208 -162013722 + AluSx SINE Alu 1 301 -11 2221 112 6 22 chrX 586386 586698 -162013232 + AluSq SINE Alu 1 307 -6 184 44 67 67 chrX 586705 586750 -162013180 + A-rich Low_complexity Low_complexity 2 46 0 3219 135 4 8 chrX 586952 587455 -162012475 - MER1A DNA MER1_type 0 529 29 1975 170 0 3 chrX 587712 588023 -162011907 - AluJo SINE Alu -2 310 1 584 66 0 0 chrX 588042 588118 -162011812 - Alu SINE Alu -5 305 230 1002 159 27 19 chrX 588119 588436 -162011494 + MLT2A2 LTR ERVL 229 447 -6 1198 207 30 30 chrX 588951 589250 -162010680 - MLT2D LTR ERVL 0 414 116 389 121 0 0 chrX 589251 589309 -162010621 + L1P4 LINE L1 5628 5685 -476 1887 109 0 12 chrX 589312 589559 -162010371 + AluSg SINE Alu 1 244 -66 1719 126 3 44 chrX 589623 589916 -162010014 - Tigger2a DNA MER2_type -153 281 1 307 194 97 32 chrX 589922 590015 -162009915 + L1MC4 LINE L1 6609 6707 -1335 1143 143 0 63 chrX 590546 590798 -162009132 + AluSq SINE Alu 60 295 -18 1586 129 40 66 chrX 590802 590939 -162008991 - THE1B LTR MaLR -69 295 156 2266 97 3 3 chrX 590939 591263 -162008667 + AluSq SINE Alu 2 313 0 1586 129 40 66 chrX 591263 591428 -162008502 - THE1B LTR MaLR -208 156 1 482 217 17 26 chrX 591430 591545 -162008385 + MLT1E2 LTR MaLR 495 608 -18 182 206 29 0 chrX 592037 592071 -162007859 + MIR SINE MIR 118 152 -56 2296 92 3 7 chrX 592088 592383 -162007547 - AluSp SINE Alu -17 296 3 32 0 0 0 chrX 592393 592425 -162007505 + AT_rich Low_complexity Low_complexity 1 32 0 694 181 9 0 chrX 592425 592541 -162007389 - FLAM_C SINE Alu -25 118 2 218 200 40 0 chrX 592665 592715 -162007215 + MIR SINE MIR 101 152 -56 1894 215 65 45 chrX 593202 593320 -162006610 - MER41D LTR ERV1 -11 546 432 2247 136 0 0 chrX 593320 593630 -162006300 + AluSx SINE Alu 2 311 -1 1894 215 65 45 chrX 593630 594046 -162005884 - MER41D LTR ERV1 -125 432 1 27 83 0 28 chrX 595808 595917 -162004013 + GC_rich Low_complexity Low_complexity 1 106 0 363 125 18 0 chrX 596163 596219 -162003711 - AluS SINE Alu -251 57 1 2168 104 11 0 chrX 596482 596769 -162003161 + AluSq SINE Alu 1 290 -23 261 0 0 0 chrX 597001 597030 -162002900 + (T)n Simple_repeat Simple_repeat 1 29 0 1909 127 9 72 chrX 597142 597284 -162002646 + AluJb SINE Alu 1 150 -162 2108 135 6 6 chrX 597284 597596 -162002334 + AluSx SINE Alu 1 312 0 1909 127 9 72 chrX 597596 597785 -162002145 + AluJb SINE Alu 150 311 -1 2251 91 0 10 chrX 597861 598159 -162001771 + AluSx SINE Alu 1 295 -17 741 161 8 16 chrX 598243 598367 -162001563 + AluJo SINE Alu 15 137 -175 1565 197 4 14 chrX 598369 598648 -162001282 + AluJo SINE Alu 5 280 -32 366 80 0 0 chrX 598650 598700 -162001230 + (TAA)n Simple_repeat Simple_repeat 1 50 0 230 75 0 25 chrX 598701 598741 -162001189 + MADE1 DNA Mariner 5 43 -37 2412 97 0 0 chrX 598939 599249 -162000681 - AluSg SINE Alu 0 310 1 1800 178 0 3 chrX 599358 599680 -162000250 - AluJo SINE Alu 0 321 1 1244 211 42 131 chrX 599694 600295 -161999635 - L1MD2 LINE L1 0 6359 5813 294 287 49 16 chrX 600345 600467 -161999463 - L1MD2 LINE L1 -2083 5725 5600 1783 161 3 20 chrX 600470 600775 -161999155 - AluJo SINE Alu -12 300 1 324 299 125 7 chrX 600902 601046 -161998884 - L1MD2 LINE L1 -2329 5479 5319 2492 54 0 14 chrX 601084 601380 -161998550 + AluY SINE Alu 1 292 -19 2750 96 13 0 chrX 601390 601767 -161998163 + L1PA8 LINE L1 5787 6168 -4 626 297 138 47 chrX 601767 602012 -161997918 - L1MC/D LINE L1 -770 5376 5155 1587 163 36 33 chrX 602012 602318 -161997612 - AluJo SINE Alu -5 307 1 626 297 138 47 chrX 602318 602890 -161997040 - L1MC/D LINE L1 -991 5155 4549 26 0 0 0 chrX 602932 602958 -161996972 + AT_rich Low_complexity Low_complexity 1 26 0 2295 82 0 10 chrX 602958 603251 -161996679 - AluSg SINE Alu -20 290 1 2167 161 21 0 chrX 603251 603629 -161996301 - L1PA16 LINE L1 -11 6155 5770 1000 139 6 6 chrX 603636 603801 -161996129 + L1PA16 LINE L1 5608 5772 -394 2660 55 0 0 chrX 603809 604118 -161995812 - AluY SINE Alu -2 309 1 1825 155 7 39 chrX 604121 604431 -161995499 - AluJb SINE Alu -12 300 1 363 272 43 27 chrX 604433 604617 -161995313 - LTR16B LTR ERVL -8 456 270 472 145 0 0 chrX 604887 604963 -161994967 - AluJ/FRAM SINE Alu -14 298 223 638 327 53 56 chrX 605064 605424 -161994506 - L1MC/D LINE L1 -1675 4471 4111 1685 157 3 28 chrX 605424 605710 -161994220 + AluJo SINE Alu 18 296 -16 638 327 53 56 chrX 605710 605817 -161994113 - L1MC/D LINE L1 -2035 4111 4005 219 170 0 0 chrX 605822 605869 -161994061 + (CA)n Simple_repeat Simple_repeat 2 48 0 341 96 0 82 chrX 606244 606317 -161993613 - MLT1A1 LTR MaLR -276 89 23 4032 52 4 4 chrX 606378 606878 -161993052 - L1PA7 LINE L1 -1 6153 5654 2171 197 5 2 chrX 606896 607312 -161992618 - L1PB4 LINE L1 -2 6154 5738 1040 177 8 6 chrX 608296 608571 -161991359 + GA-rich Low_complexity Low_complexity 1 457 -76 1040 128 6 0 chrX 608571 608750 -161991180 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1040 177 8 6 chrX 608750 608828 -161991102 + GA-rich Low_complexity Low_complexity 457 533 0 2414 221 55 2 chrX 608946 609475 -161990455 + MER74A LTR ERVL 1 557 -1 2021 150 0 13 chrX 609990 610303 -161989627 - AluSx SINE Alu -2 310 2 650 222 7 22 chrX 610544 610821 -161989109 - MLT1B LTR MaLR -2 465 170 1856 161 53 9 chrX 610825 611199 -161988731 - MLT1B LTR MaLR 0 396 1 823 192 7 7 chrX 611564 611710 -161988220 - FRAM SINE Alu -16 150 5 1142 139 6 0 chrX 611718 611891 -161988039 - AluSg/x SINE Alu 0 310 137 217 321 0 29 chrX 612946 613083 -161986847 + (TTAGG)n Simple_repeat Simple_repeat 3 135 0 206 264 0 35 chrX 613191 613278 -161986652 + (TTAAG)n Simple_repeat Simple_repeat 4 87 0 * 209 248 57 19 chrX 613218 613323 -161986607 + (AGTTG)n Simple_repeat Simple_repeat 1 109 0 276 314 0 31 chrX 613568 613727 -161986203 + (TTAGG)n Simple_repeat Simple_repeat 2 155 0 2825 176 16 69 chrX 613921 614274 -161985656 - L1MA8 LINE L1 -3 6288 5993 2442 104 0 0 chrX 614274 614583 -161985347 - AluSc SINE Alu 0 309 1 2825 176 16 69 chrX 614583 614971 -161984959 - L1MA8 LINE L1 -298 5993 5586 849 142 0 0 chrX 615114 615234 -161984696 + AluSq/x SINE Alu 1 120 -192 1098 133 0 0 chrX 615732 615920 -161984010 - AluSg/x SINE Alu 0 319 132 2132 114 0 41 chrX 615921 616236 -161983694 - AluSg SINE Alu -8 302 1 2055 116 3 7 chrX 617467 617783 -161982147 + AluSx SINE Alu 1 315 0 2018 96 0 3 chrX 617941 618223 -161981707 + L1PA7 LINE L1 5874 6154 0 1694 91 0 0 chrX 619124 619333 -161980597 + AluSg SINE Alu 1 209 -101 277 102 0 0 chrX 619335 619384 -161980546 + AluSg SINE Alu 252 300 0 21 0 0 0 chrX 619537 619558 -161980372 + AT_rich Low_complexity Low_complexity 1 21 0 3306 190 9 31 chrX 619558 619796 -161980134 - L1PB4 LINE L1 -1 6155 5913 2352 203 54 30 chrX 619796 620293 -161979637 + LTR22 LTR ERVK 1 509 0 3306 190 9 31 chrX 620293 620733 -161979197 - L1PB4 LINE L1 -243 5913 5492 2155 101 24 0 chrX 620763 621051 -161978879 + AluSq SINE Alu 7 301 -12 2177 105 0 10 chrX 621061 621355 -161978575 + AluSx SINE Alu 7 297 -15 2400 95 0 0 chrX 621931 622227 -161977703 + AluSg SINE Alu 1 296 -14 389 291 10 10 chrX 622227 622330 -161977600 - MLT1E LTR MaLR -489 104 2 2051 133 3 3 chrX 622569 622869 -161977061 - AluSx SINE Alu -12 300 1 467 315 12 6 chrX 624271 624436 -161975494 - MLT1G1 LTR MaLR -207 388 223 2361 104 3 0 chrX 624584 624892 -161975038 - AluSp SINE Alu 0 313 5 2526 133 23 14 chrX 624903 625333 -161974597 + MER57B LTR ERV1 1 434 0 491 316 63 36 chrX 625359 625383 -161974547 + L1ME LINE L1 1325 1347 -5256 2307 119 3 0 chrX 625383 625695 -161974235 + AluSp SINE Alu 1 313 0 491 316 63 36 chrX 625695 625977 -161973953 + L1ME LINE L1 1347 1617 -4986 5595 54 1 0 chrX 626323 627007 -161972923 - L1PA7 LINE L1 -1 6153 5469 1007 225 76 31 chrX 627852 628174 -161971756 + MLT1A1 LTR MaLR 23 410 -18 339 156 0 16 chrX 628213 628277 -161971653 + MLT1A1 LTR MaLR 294 356 -9 443 252 25 69 chrX 628280 628439 -161971491 - MLT1G1 LTR MaLR -314 153 2 2075 137 0 0 chrX 628467 628766 -161971164 + AluSx SINE Alu 1 299 -13 236 308 0 0 chrX 628766 628831 -161971099 - L2 LINE L2 -18 3295 3231 204 267 0 0 chrX 628866 628926 -161971004 + (TG)n Simple_repeat Simple_repeat 1 60 0 1991 141 0 33 chrX 628975 629274 -161970656 - AluJo SINE Alu -23 289 1 2282 108 3 0 chrX 629345 629641 -161970289 - AluSx SINE Alu -15 297 1 2346 103 0 10 chrX 629978 630280 -161969650 - AluSg SINE Alu -11 299 1 1844 162 8 22 chrX 630421 630764 -161969166 - L1PA16 LINE L1 0 6166 5827 2160 131 3 3 chrX 630764 631070 -161968860 - AluSc SINE Alu -3 306 1 1844 162 8 22 chrX 631070 631084 -161968846 - L1PA16 LINE L1 -339 5827 5814 1023 110 35 0 chrX 631084 631229 -161968701 - AluSp SINE Alu -30 283 134 1276 146 26 18 chrX 631229 631455 -161968475 - AluSg/x SINE Alu 0 312 85 591 104 0 0 chrX 631455 631532 -161968398 - AluSg/x SINE Alu -62 250 174 1203 83 0 0 chrX 631655 631800 -161968130 - AluSg SINE Alu -165 145 1 230 67 0 0 chrX 631815 631845 -161968085 - L1M LINE L1 -771 5397 5368 23 0 0 0 chrX 631889 631912 -161968018 + AT_rich Low_complexity Low_complexity 1 23 0 1740 178 30 0 chrX 631990 632288 -161967642 - AluJb SINE Alu -5 307 1 2253 88 0 3 chrX 632320 632605 -161967325 - AluSg SINE Alu -26 284 1 2539 185 15 2 chrX 632928 633409 -161966521 - LTR15 LTR ERV1 -6 487 1 432 333 46 35 chrX 633492 633666 -161966264 + MER5A DNA MER1_type 1 176 -13 2345 100 3 3 chrX 633937 634238 -161965692 - AluSq SINE Alu -12 301 1 1705 118 30 43 chrX 634480 634631 -161965299 + L1MA3 LINE L1 5988 6135 -170 2313 103 17 0 chrX 634631 634932 -161964998 + AluSx SINE Alu 2 307 -5 1705 118 30 43 chrX 634932 635084 -161964846 + L1MA3 LINE L1 6135 6287 -18 23 0 0 0 chrX 636050 636073 -161963857 + AT_rich Low_complexity Low_complexity 1 23 0 1330 164 9 0 chrX 636119 636332 -161963598 - AluJo SINE Alu -94 218 4 1232 203 114 7 chrX 636339 636610 -161963320 - AluJo SINE Alu -2 300 1 548 282 96 47 chrX 636619 637005 -161962925 - Charlie1b DNA MER1_type -115 408 4 467 193 47 94 chrX 638673 638688 -161961242 - Charlie1 DNA MER1_type 0 2761 2747 2172 104 10 0 chrX 638688 638985 -161960945 - AluSp SINE Alu -13 300 1 467 193 47 94 chrX 638985 639182 -161960748 - Charlie1 DNA MER1_type -14 2747 2559 62 52 0 0 chrX 639186 639283 -161960647 + AT_rich Low_complexity Low_complexity 1 97 0 837 137 75 176 chrX 639304 639457 -161960473 - L1MA7 LINE L1 -3 6288 6121 868 100 0 0 chrX 639457 639577 -161960353 - L1PB1 LINE L1 -1 6150 6031 837 137 75 176 chrX 639577 639600 -161960330 - L1MA7 LINE L1 -170 6121 6097 2218 125 3 3 chrX 639600 639912 -161960018 + AluSx SINE Alu 1 312 0 837 137 75 176 chrX 639912 640040 -161959890 - L1MA7 LINE L1 -194 6097 6014 485 275 23 41 chrX 640048 640266 -161959664 - Charlie1 DNA MER1_type -197 2564 2351 198 71 0 0 chrX 640718 640746 -161959184 + (TAA)n Simple_repeat Simple_repeat 2 29 0 231 146 0 0 chrX 640789 640830 -161959100 + (TAA)n Simple_repeat Simple_repeat 2 42 0 198 71 0 0 chrX 640872 640900 -161959030 + (TAA)n Simple_repeat Simple_repeat 2 29 0 279 79 0 0 chrX 640945 640983 -161958947 + (TAA)n Simple_repeat Simple_repeat 1 38 0 216 97 0 0 chrX 641026 641057 -161958873 + (TAA)n Simple_repeat Simple_repeat 2 32 0 215 158 0 0 chrX 641102 641140 -161958790 + (TAA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 641366 641394 -161958536 + AT_rich Low_complexity Low_complexity 1 28 0 2233 110 3 10 chrX 641654 641962 -161957968 - AluSq SINE Alu -5 308 3 203 184 0 0 chrX 642009 642047 -161957883 + (TAA)n Simple_repeat Simple_repeat 1 38 0 201 39 0 0 chrX 642092 642118 -161957812 + (TAA)n Simple_repeat Simple_repeat 3 28 0 285 29 0 0 chrX 642163 642197 -161957733 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1036 247 136 19 chrX 642767 643200 -161956730 - MLT1D LTR MaLR -19 486 3 612 231 87 63 chrX 643212 643498 -161956432 - MLT1C LTR MaLR -122 345 53 2491 86 0 0 chrX 644282 644585 -161955345 + AluSx SINE Alu 1 303 -9 2080 97 31 3 chrX 647177 647466 -161952464 + AluSx SINE Alu 1 297 -15 1701 107 4 27 chrX 648022 648283 -161951647 + AluSx SINE Alu 42 296 -16 21 0 0 0 chrX 649306 649327 -161950603 + AT_rich Low_complexity Low_complexity 1 21 0 300 283 0 35 chrX 649587 649700 -161950230 + CT-rich Low_complexity Low_complexity 3 111 0 729 115 0 68 chrX 649710 649902 -161950028 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 865 141 0 22 chrX 649939 650123 -161949807 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chrX 650444 650471 -161949459 + AT_rich Low_complexity Low_complexity 1 27 0 303 267 0 30 chrX 650488 650589 -161949341 + G-rich Low_complexity Low_complexity 2 99 0 423 185 8 25 chrX 650597 650716 -161949214 + CT-rich Low_complexity Low_complexity 2 118 0 379 235 10 20 chrX 651814 651912 -161948018 - MER58B DNA MER1_type -20 321 225 2145 94 11 0 chrX 651913 652189 -161947741 + AluSq SINE Alu 2 280 -33 230 191 24 71 chrX 652215 652299 -161947631 - MER58B DNA MER1_type -183 158 79 180 0 0 0 chrX 652375 652395 -161947535 + (T)n Simple_repeat Simple_repeat 1 20 0 1755 151 0 31 chrX 652614 652933 -161946997 + AluJo SINE Alu 1 310 0 911 207 0 0 chrX 652933 653097 -161946833 + AluJb SINE Alu 135 298 -14 1490 176 22 38 chrX 653620 653756 -161946174 + AluJo SINE Alu 1 138 -174 1749 184 3 7 chrX 653756 654055 -161945875 + AluJo SINE Alu 1 298 -14 1490 176 22 38 chrX 654055 654231 -161945699 + AluJo SINE Alu 138 308 -4 2238 106 7 0 chrX 654508 654801 -161945129 - AluSq SINE Alu -18 295 1 419 206 0 20 chrX 654981 655083 -161944847 - L1MA7 LINE L1 -8 6283 6184 2081 207 43 62 chrX 655193 655357 -161944573 - L1MA8 LINE L1 -107 6184 6018 1715 175 14 7 chrX 655357 655649 -161944281 - AluJo SINE Alu -18 294 1 744 196 0 0 chrX 655652 655785 -161944145 - AluJo/FLAM SINE Alu -169 133 1 2081 207 43 62 chrX 655785 656192 -161943738 - L1MA8 LINE L1 -275 6016 5620 2124 119 3 26 chrX 658309 658620 -161941310 - AluSx SINE Alu -8 304 1 5148 24 0 0 chrX 659378 659962 -161939968 - L1PA4 LINE L1 -7 6148 5565 1127 206 58 21 chrX 659962 660253 -161939677 - MLT1A1 LTR MaLR -54 311 10 209 301 23 40 chrX 661714 661890 -161938040 + (CAGGT)n Simple_repeat Simple_repeat 4 176 0 33 0 0 0 chrX 662470 662503 -161937427 + AT_rich Low_complexity Low_complexity 1 33 0 551 260 83 0 chrX 662703 662884 -161937046 - MER58A DNA MER1_type -2 222 27 285 324 0 32 chrX 663597 663782 -161936148 + (TTAGG)n Simple_repeat Simple_repeat 2 180 0 1646 201 25 88 chrX 664038 664132 -161935798 - L1MA8 LINE L1 -184 6107 6009 1573 192 7 0 chrX 664132 664413 -161935517 - AluJo SINE Alu -19 293 11 1646 201 25 88 chrX 664413 664433 -161935497 - L1MA8 LINE L1 -282 6009 5989 698 204 0 0 chrX 664433 664565 -161935365 - FLAM_C SINE Alu -1 132 1 1646 201 25 88 chrX 664565 664970 -161934960 - L1MA8 LINE L1 -302 5989 5620 2280 107 0 0 chrX 666649 666949 -161932981 - AluSx SINE Alu -12 300 1 2026 138 23 0 chrX 667510 667815 -161932115 - AluSq SINE Alu -1 312 1 2218 151 10 29 chrX 667818 668155 -161931775 - L1PA15 LINE L1 -6 6159 5830 2200 115 3 0 chrX 668155 668450 -161931480 - AluSp SINE Alu -17 296 1 2218 151 10 29 chrX 668450 668522 -161931408 - L1PA15 LINE L1 -335 5830 5758 2295 101 0 0 chrX 668740 669036 -161930894 - AluSq SINE Alu -17 296 1 529 168 0 0 chrX 669220 669327 -161930603 - L1MA7 LINE L1 -1 6290 6184 1381 194 97 119 chrX 669398 669608 -161930322 - L1MA7 LINE L1 -88 6203 5990 1588 190 14 0 chrX 669608 669892 -161930038 - AluJo SINE Alu -24 288 1 739 203 0 0 chrX 669897 670030 -161929900 - FLAM_C SINE Alu 0 133 1 1381 194 97 119 chrX 670030 670410 -161929520 - L1MA7 LINE L1 -305 5986 5620 988 106 0 0 chrX 672032 672164 -161927766 - AluSg/x SINE Alu -11 299 168 1551 202 57 9 chrX 672165 672496 -161927434 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 672540 672568 -161927362 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 672809 672945 -161926985 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 673111 673133 -161926797 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 673351 673621 -161926309 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 673621 673777 -161926153 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 674079 674377 -161925553 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 674563 674667 -161925263 - L1MA7 LINE L1 -3 6288 6184 547 187 92 19 chrX 674742 674921 -161925009 - L1MA7 LINE L1 -91 6209 6032 1685 181 24 0 chrX 674940 675228 -161924702 - AluJo SINE Alu -17 295 1 703 221 0 0 chrX 675230 675370 -161924560 - FLAM_C SINE Alu -2 141 2 1754 218 50 0 chrX 675371 675774 -161924156 - L1MA8 LINE L1 -249 6042 5620 236 177 0 48 chrX 677741 677803 -161922127 - MLT1A1 LTR MaLR -306 59 1 2365 92 0 0 chrX 678114 678409 -161921521 - AluSq SINE Alu -18 295 1 1604 174 3 34 chrX 678413 678735 -161921195 - AluJo SINE Alu 0 312 1 2621 50 3 0 chrX 679256 679559 -161920371 - AluY SINE Alu -7 304 1 1900 126 4 0 chrX 680062 680325 -161919605 - AluSx SINE Alu -48 264 1 192 40 0 0 chrX 680859 680884 -161919046 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1994 125 11 4 chrX 680886 681167 -161918763 - AluSp SINE Alu -30 283 1 403 157 0 0 chrX 681168 681238 -161918692 - L1PA13 LINE L1 -335 5828 5759 1988 146 0 31 chrX 681462 681783 -161918147 - AluSq SINE Alu -2 311 1 2162 113 3 26 chrX 684236 684546 -161915384 - AluSx SINE Alu -8 304 2 1777 172 27 0 chrX 685098 685395 -161914535 - AluSq SINE Alu -8 305 1 2193 158 20 27 chrX 685398 685729 -161914201 - L1PA15 LINE L1 -7 6158 5829 2129 125 10 0 chrX 685729 686025 -161913905 - AluSp SINE Alu -14 299 1 2193 158 20 27 chrX 686025 686097 -161913833 - L1PA15 LINE L1 -336 5829 5758 2041 118 24 0 chrX 686311 686600 -161913330 - AluSq SINE Alu -17 296 1 436 187 7 72 chrX 686784 686923 -161913007 - L1MA7 LINE L1 -1 6290 6161 1818 200 43 86 chrX 686962 687179 -161912751 - L1MA9 LINE L1 -97 6215 5990 1665 171 15 0 chrX 687179 687453 -161912477 - AluJo SINE Alu -24 288 11 1818 200 43 86 chrX 687453 687476 -161912454 - L1MA9 LINE L1 -322 5990 5968 677 207 0 15 chrX 687476 687611 -161912319 - FLAM_C SINE Alu 0 133 1 1818 200 43 86 chrX 687611 688010 -161911920 - L1MA9 LINE L1 -344 5968 5620 2069 108 49 7 chrX 689908 690196 -161909734 - AluSx SINE Alu -12 300 1 1878 150 24 0 chrX 690806 691099 -161908831 - AluSq SINE Alu -13 300 1 2103 151 40 33 chrX 691102 691427 -161908503 - L1PA15 LINE L1 -7 6158 5828 2085 141 3 0 chrX 691427 691732 -161908198 - AluSp SINE Alu -7 306 1 2103 151 40 33 chrX 691732 691804 -161908126 - L1PA15 LINE L1 -337 5828 5758 1943 148 3 22 chrX 692050 692368 -161907562 - AluSq SINE Alu -1 312 1 875 115 0 8 chrX 694557 694687 -161905243 - AluSg/x SINE Alu -14 296 168 1589 217 23 9 chrX 694688 695033 -161904897 - MLT1A1 LTR MaLR -15 350 1 1108 88 0 0 chrX 695340 695477 -161904453 - AluSp/q SINE Alu -17 296 160 229 180 22 67 chrX 695477 695566 -161904364 - MER58 DNA MER1_type -183 158 74 207 167 0 0 chrX 695662 695704 -161904226 + T-rich Low_complexity Low_complexity 1 42 0 1511 146 89 14 chrX 695899 696180 -161903750 + AluJo SINE Alu 1 302 -10 808 220 0 24 chrX 696180 696348 -161903582 + AluJb SINE Alu 134 297 -15 1561 168 16 38 chrX 696868 697006 -161902924 + AluJo SINE Alu 1 141 -171 1763 183 3 7 chrX 697006 697306 -161902624 + AluJb SINE Alu 1 299 -13 1561 168 16 38 chrX 697306 697482 -161902448 + AluJo SINE Alu 141 308 -4 2192 99 0 0 chrX 697758 698064 -161901866 - AluSq SINE Alu 0 306 1 332 94 19 0 chrX 698286 698339 -161901591 + (TA)n Simple_repeat Simple_repeat 1 54 0 364 182 0 0 chrX 698375 698441 -161901489 - L1MA7 LINE L1 -42 6249 6184 1836 201 39 79 chrX 698572 698741 -161901189 - L1MA8 LINE L1 -100 6191 6017 1573 192 7 0 chrX 698741 699022 -161900908 - AluJo SINE Alu -19 293 11 1836 201 39 79 chrX 699022 699042 -161900888 - L1MA8 LINE L1 -274 6017 5998 698 204 0 0 chrX 699042 699174 -161900756 - FLAM_C SINE Alu -1 132 1 1836 201 39 79 chrX 699174 699579 -161900351 - L1MA8 LINE L1 -293 5998 5620 988 106 0 0 chrX 700452 700584 -161899346 - AluSg/x SINE Alu -11 301 170 1551 202 57 9 chrX 700585 700916 -161899014 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 700960 700988 -161898942 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 701229 701365 -161898565 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 701531 701553 -161898377 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 701771 702041 -161897889 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 702041 702197 -161897733 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 702498 702796 -161897134 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 702982 703086 -161896844 - L1MA7 LINE L1 -3 6288 6184 1918 193 52 64 chrX 703195 703359 -161896571 - L1MA8 LINE L1 -100 6191 6027 1685 181 24 0 chrX 703359 703647 -161896283 - AluJo SINE Alu -17 295 1 684 226 0 0 chrX 703657 703790 -161896140 - FLAM_C SINE Alu 0 133 1 1918 193 52 64 chrX 703790 704193 -161895737 - L1MA8 LINE L1 -273 6018 5620 941 55 0 0 chrX 704631 704740 -161895190 - AluSq/x SINE Alu -203 109 1 1311 178 12 42 chrX 704742 705001 -161894929 + MLT1A1 LTR MaLR 31 318 -78 1694 95 5 0 chrX 705001 705223 -161894707 + AluSp SINE Alu 87 309 -4 207 0 0 0 chrX 705372 705395 -161894535 + (A)n Simple_repeat Simple_repeat 1 23 0 258 237 0 0 chrX 706005 706081 -161893849 + (CAT)n Simple_repeat Simple_repeat 2 77 0 1678 181 7 17 chrX 706898 707196 -161892734 + AluJb SINE Alu 1 295 -17 1041 76 0 7 chrX 707376 707520 -161892410 - L1PA8 LINE L1 -341 5831 5689 1665 196 20 38 chrX 707531 707929 -161892001 - L1MB1 LINE L1 -1 6167 5777 2164 109 0 16 chrX 707929 708232 -161891698 - AluSx SINE Alu -14 298 1 2382 64 24 3 chrX 708239 708536 -161891394 - AluY SINE Alu -8 303 1 2071 110 23 17 chrX 708589 708889 -161891041 - AluSx SINE Alu -10 302 1 233 139 23 0 chrX 708895 708938 -161890992 - L1M2 LINE L1 -467 5824 5781 1849 129 0 0 chrX 709038 709293 -161890637 - AluSx SINE Alu -54 258 4 1703 118 22 4 chrX 709304 709576 -161890354 + L1PB1 LINE L1 5867 6143 -8 1189 144 0 42 chrX 709616 709831 -161890099 - Tigger2a DNA MER2_type -228 206 1 977 248 44 50 chrX 709832 710175 -161889755 - MLT1A2 LTR MaLR -33 341 1 1549 109 0 0 chrX 710967 711168 -161888762 + AluSq SINE Alu 1 201 -112 947 55 87 0 chrX 711288 711415 -161888515 - MER85 DNA T2_type 0 139 2 566 233 10 79 chrX 711430 711553 -161888377 - MER4C LTR ERV1 -2 463 333 2418 81 0 0 chrX 711553 711851 -161888079 - AluSx SINE Alu -14 298 1 2211 111 3 3 chrX 711851 712156 -161887774 - AluSx SINE Alu -6 306 1 566 233 10 79 chrX 712156 712233 -161887697 - MER4C LTR ERV1 -130 335 276 897 148 7 187 chrX 712241 712600 -161887330 - MER4A LTR ERV1 -177 522 139 1658 129 53 76 chrX 712667 712969 -161886961 + AluJb SINE Alu 1 295 -17 3307 129 8 2 chrX 713008 713526 -161886404 + MER41B LTR ERV1 113 633 -2 1694 127 8 0 chrX 713654 713891 -161886039 + AluSq SINE Alu 62 300 -13 2069 131 3 0 chrX 713901 714198 -161885732 + AluSx SINE Alu 1 298 -14 1861 162 17 67 chrX 714387 714769 -161885161 + Tigger2a DNA MER2_type 2 365 -2343 2238 127 0 0 chrX 714769 715068 -161884862 + AluSq SINE Alu 1 299 -14 1861 162 17 67 chrX 715068 715087 -161884843 + Tigger2a DNA MER2_type 365 383 -51 697 189 6 6 chrX 715192 715372 -161884558 + (CAT)n Simple_repeat Simple_repeat 1 180 0 806 192 6 0 chrX 715389 715717 -161884213 + (CAT)n Simple_repeat Simple_repeat 1 330 0 231 354 98 32 chrX 716137 716422 -161883508 - L2 LINE L2 -616 2698 2395 1346 66 11 0 chrX 716852 717035 -161882895 + L1PA2 LINE L1 5932 6116 -39 2175 158 71 76 chrX 718003 718231 -161881699 + LTR39 LTR ERV1 1 229 -554 2857 56 26 3 chrX 718231 718608 -161881322 + L1PA7 LINE L1 5767 6152 -2 2175 158 71 76 chrX 718608 718891 -161881039 + LTR39 LTR ERV1 229 511 -272 2278 99 0 17 chrX 718891 719193 -161880737 - AluSq SINE Alu -16 297 1 2175 158 71 76 chrX 719193 719243 -161880687 + LTR39 LTR ERV1 511 560 -223 741 121 17 0 chrX 719343 719459 -161880471 + MLT2A1 LTR ERVL 327 444 0 492 284 138 53 chrX 719644 719926 -161880004 + L1M4 LINE L1 2922 3227 -2919 2232 103 4 0 chrX 720248 720529 -161879401 + AluSx SINE Alu 1 282 -30 200 91 0 30 chrX 720529 720562 -161879368 + (TC)n Simple_repeat Simple_repeat 1 32 0 324 0 0 0 chrX 720569 720605 -161879325 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 677 273 19 19 chrX 720657 720866 -161879064 + MER58A DNA MER1_type 1 209 -15 244 321 176 0 chrX 721223 721388 -161878542 + MER117 DNA MER1_type 4 197 0 240 111 0 0 chrX 721539 721575 -161878355 + (ATG)n Simple_repeat Simple_repeat 1 36 0 372 94 0 0 chrX 721604 721657 -161878273 + (CA)n Simple_repeat Simple_repeat 2 54 0 933 91 0 8 chrX 721663 721784 -161878146 - AluSc SINE Alu -27 282 163 1068 96 0 0 chrX 721884 722019 -161877911 - AluSq SINE Alu -54 259 125 188 365 0 21 chrX 722069 722165 -161877765 - MIR SINE MIR -140 122 29 1473 224 0 20 chrX 722407 722702 -161877228 + AluJo SINE Alu 1 289 -23 264 77 0 0 chrX 722790 722829 -161877101 + LTR9 LTR ERV1 1 39 -573 1096 170 0 6 chrX 722829 723000 -161876930 + AluJb SINE Alu 129 298 -14 526 31 0 0 chrX 723618 723683 -161876247 + LTR9 LTR ERV1 1 65 -547 1507 95 22 56 chrX 723683 723915 -161876015 - AluSg/x SINE Alu -1 309 86 704 207 0 0 chrX 724844 724960 -161874970 - FLAM_A SINE Alu -17 116 1 778 129 57 0 chrX 725056 725180 -161874750 + AluJo SINE Alu 14 144 -168 2405 106 0 0 chrX 725183 725495 -161874435 + AluSp SINE Alu 1 312 -1 1708 167 14 3 chrX 725529 725822 -161874108 + AluJo SINE Alu 14 309 -3 399 41 0 0 chrX 726326 726375 -161873555 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 2131 122 0 22 chrX 726934 727253 -161872677 - AluSx SINE Alu 0 312 1 1044 101 14 0 chrX 727253 727392 -161872538 - AluSq/x SINE Alu -172 141 1 2381 69 3 0 chrX 727630 727920 -161872010 - AluSx SINE Alu -21 291 1 695 295 74 44 chrX 727969 728308 -161871622 + MER92B LTR ERV1 27 375 -261 1877 168 0 43 chrX 728797 729004 -161870926 + L1PA15 LINE L1 5831 6019 -146 2187 100 0 0 chrX 729004 729284 -161870646 + AluSg SINE Alu 1 280 -30 1877 168 0 43 chrX 729284 729421 -161870509 + L1PA15 LINE L1 6019 6160 -5 385 117 48 58 chrX 729422 729525 -161870405 + Tigger3(Golem) DNA MER2_type 2425 2526 -503 1699 169 3 0 chrX 730664 730966 -161868964 - Tigger1 DNA MER2_type -165 2253 1951 2508 89 0 6 chrX 730967 731282 -161868648 + AluSq SINE Alu 1 313 0 714 213 0 0 chrX 731291 731432 -161868498 + Tigger1 DNA MER2_type 1538 1678 -740 329 115 19 0 chrX 731533 731585 -161868345 - Alu SINE Alu -249 53 1 376 217 12 0 chrX 731602 731770 -161868160 + CT-rich Low_complexity Low_complexity 1 170 0 22 0 0 0 chrX 732747 732769 -161867161 + AT_rich Low_complexity Low_complexity 1 22 0 1344 138 4 9 chrX 733030 733255 -161866675 - MLT1B LTR MaLR 0 390 167 1004 165 10 16 chrX 733261 733455 -161866475 - MLT1B LTR MaLR 0 390 198 274 317 0 0 chrX 733883 733987 -161865943 + C-rich Low_complexity Low_complexity 4 107 0 228 303 11 0 chrX 734186 734275 -161865655 + Charlie5 DNA MER1_type 29 118 -2494 2237 94 13 3 chrX 734829 735127 -161864803 - AluSp SINE Alu 0 313 13 920 98 0 0 chrX 735720 735842 -161864088 - AluY SINE Alu -12 299 178 2019 158 27 21 chrX 735958 736332 -161863598 - MER1A DNA MER1_type -61 468 93 2523 61 0 3 chrX 736523 736818 -161863112 - AluSc SINE Alu -15 294 1 337 295 0 9 chrX 737006 737111 -161862819 + MLT1C LTR MaLR 360 463 -4 1177 178 73 8 chrX 737132 737379 -161862551 + Tigger2a DNA MER2_type 1 263 -171 311 65 0 0 chrX 737389 737435 -161862495 + Tigger2a DNA MER2_type 232 277 -167 2264 119 0 3 chrX 737440 737752 -161862178 - AluSp SINE Alu -2 311 1 493 49 0 0 chrX 737812 737873 -161862057 + MER1A DNA MER1_type 261 321 -208 443 212 169 0 chrX 737853 737971 -161861959 + Tigger2a DNA MER2_type 292 429 -5 * 842 98 0 0 chrX 738089 738201 -161861729 - AluSq/x SINE Alu -200 112 1 2403 99 0 0 chrX 738505 738808 -161861122 - AluSx SINE Alu -9 303 1 2366 101 7 0 chrX 739303 739611 -161860319 - AluSg SINE Alu 0 310 1 1639 186 7 14 chrX 739879 740175 -161859755 + AluJo SINE Alu 11 304 -8 226 304 25 0 chrX 740353 740432 -161859498 - MLT1B LTR MaLR -286 181 101 183 204 0 0 chrX 740769 740813 -161859117 + (CA)n Simple_repeat Simple_repeat 2 45 0 1178 78 0 20 chrX 741129 741282 -161858648 + AluSg SINE Alu 1 150 -160 685 259 70 5 chrX 741285 741470 -161858460 - MIR SINE MIR -18 244 48 1044 83 0 0 chrX 741547 741680 -161858250 + AluY SINE Alu 167 299 -12 4970 108 13 18 chrX 741680 742109 -161857821 + L1PA13 LINE L1 5359 5784 -379 1876 99 48 61 chrX 742109 742421 -161857509 + AluSg SINE Alu 1 308 -2 4970 108 13 18 chrX 742421 742781 -161857149 + L1PA13 LINE L1 5784 6144 -19 1049 170 39 5 chrX 743024 743230 -161856700 - L1M2 LINE L1 -506 5785 5573 2163 112 30 0 chrX 743318 743622 -161856308 + AluSq SINE Alu 1 313 0 2018 118 59 42 chrX 744577 744607 -161855323 + THE1B LTR MaLR 3 31 -333 2029 133 17 0 chrX 744607 744900 -161855030 - AluSq SINE Alu -15 298 1 2018 118 59 42 chrX 744900 745224 -161854706 + THE1B LTR MaLR 31 363 -1 3051 62 10 20 chrX 745265 745666 -161854264 + L1PA7 LINE L1 5758 6154 0 1340 212 0 35 chrX 746323 746639 -161853291 - MLT2D LTR ERVL 0 414 110 932 147 0 51 chrX 746639 746795 -161853135 - AluSp/q SINE Alu -12 301 154 443 208 31 6 chrX 746942 747101 -161852829 + GA-rich Low_complexity Low_complexity 1 163 0 1615 174 16 45 chrX 747825 748136 -161851794 + AluJo SINE Alu 1 302 -10 333 196 78 0 chrX 748614 748767 -161851163 + (TA)n Simple_repeat Simple_repeat 1 165 0 40 79 0 0 chrX 748794 748883 -161851047 + AT_rich Low_complexity Low_complexity 1 89 0 354 145 90 18 chrX 748934 749100 -161850830 + (TA)n Simple_repeat Simple_repeat 1 178 0 724 158 16 16 chrX 749115 749242 -161850688 - FLAM_A SINE Alu -6 136 10 2176 112 0 3 chrX 749663 749950 -161849980 - AluSx SINE Alu -8 304 19 1186 195 24 30 chrX 750396 750694 -161849236 + L1MB3 LINE L1 5596 5891 -292 2293 178 11 15 chrX 750694 751155 -161848775 + L1MB3 LINE L1 5723 6181 -2 2168 102 27 0 chrX 751174 751467 -161848463 + AluSp SINE Alu 1 301 -12 305 69 0 52 chrX 751467 751516 -161848414 + L1MB3 LINE L1 6134 6181 -2 2139 127 0 0 chrX 751531 751838 -161848092 + AluSx SINE Alu 1 307 -5 1795 162 30 20 chrX 752768 753071 -161846859 - AluJo SINE Alu -6 306 1 2286 112 0 6 chrX 753090 753403 -161846527 - AluY SINE Alu 0 311 1 2094 68 0 8 chrX 753718 753983 -161845947 + AluY SINE Alu 45 307 -4 1377 98 0 0 chrX 753983 754157 -161845773 + AluSg/x SINE Alu 124 297 -13 505 156 0 33 chrX 754354 754444 -161845486 - AluS SINE Alu -226 87 1 216 0 0 0 chrX 754873 754897 -161845033 + (TG)n Simple_repeat Simple_repeat 1 24 0 832 200 0 0 chrX 755394 755549 -161844381 + AluJo SINE Alu 1 155 -157 1685 166 7 7 chrX 755550 755840 -161844090 + AluJo SINE Alu 23 312 0 1068 109 0 0 chrX 755924 756062 -161843868 + AluSp/q SINE Alu 162 299 -14 2090 101 0 0 chrX 756186 756462 -161843468 + AluSx SINE Alu 37 312 0 1301 235 68 29 chrX 756486 756928 -161843002 + MLT1C LTR MaLR 7 465 -2 2324 91 0 3 chrX 757945 758242 -161841688 - AluSc SINE Alu -13 296 1 301 263 30 0 chrX 759507 759606 -161840324 - MLT2D LTR ERVL -310 104 3 29 70 0 0 chrX 759803 759860 -161840070 + AT_rich Low_complexity Low_complexity 1 57 0 297 0 0 0 chrX 759863 759896 -161840034 + (TA)n Simple_repeat Simple_repeat 1 33 0 3098 61 8 5 chrX 759898 760523 -161839407 - L1PA7 LINE L1 -2 6152 5392 3614 161 4 85 chrX 760638 761416 -161838514 - LTR62 LTR ERVK -4 715 1 1280 201 60 2 chrX 761421 761830 -161838100 - LTR19A LTR ERV1 0 486 1 2197 129 0 3 chrX 762664 762974 -161836956 + AluSq SINE Alu 1 309 -4 982 250 79 27 chrX 763159 763542 -161836388 + MLT1C LTR MaLR 45 454 -13 492 169 0 11 chrX 764328 764339 -161835591 + L1PB1 LINE L1 5782 5792 -359 219 88 0 0 chrX 764339 764373 -161835557 + (CA)n Simple_repeat Simple_repeat 2 35 0 492 169 0 11 chrX 764373 764450 -161835480 + L1PB1 LINE L1 5792 5869 -282 2390 66 0 3 chrX 764451 764753 -161835177 - L1PA7 LINE L1 -3 6151 5851 3321 172 33 33 chrX 764753 765365 -161834565 + L1PB2 LINE L1 5460 6095 -56 2202 120 0 10 chrX 765365 765665 -161834265 + AluSx SINE Alu 4 300 -12 3321 172 33 33 chrX 765665 765723 -161834207 + L1PB2 LINE L1 6094 6151 0 1929 212 22 7 chrX 765953 766359 -161833571 - MSTB1 LTR MaLR 0 432 21 2372 114 0 0 chrX 766442 766750 -161833180 - AluSx SINE Alu -4 308 1 281 232 24 19 chrX 767531 767638 -161832292 - MLT1C LTR MaLR -353 114 31 896 97 0 0 chrX 767696 767809 -161832121 + AluSg SINE Alu 1 113 -197 989 85 0 0 chrX 767809 767938 -161831992 + L1PA8 LINE L1 6034 6162 -10 421 217 0 23 chrX 767960 768085 -161831845 - MLT1D LTR MaLR -10 495 260 846 122 0 0 chrX 768085 768208 -161831722 + AluSp/q SINE Alu 190 312 -1 2087 104 10 23 chrX 768493 768800 -161831130 + AluSc SINE Alu 6 308 -1 562 75 54 21 chrX 768940 769033 -161830897 + MER4A LTR ERV1 3 98 -566 257 59 0 0 chrX 769045 769079 -161830851 + Alu SINE Alu 1 34 -266 944 142 25 12 chrX 969362 969524 -161630406 + AluJo/FRAM SINE Alu 136 299 -13 1202 130 12 0 chrX 970145 970314 -161629616 - AluSg/x SINE Alu -10 300 130 1043 145 54 0 chrX 970409 970575 -161629355 - AluSq SINE Alu -5 308 134 2394 103 3 0 chrX 970575 970877 -161629053 - AluSq SINE Alu -10 303 1 180 0 0 0 chrX 971245 971265 -161628665 + (TA)n Simple_repeat Simple_repeat 1 20 0 2427 82 0 0 chrX 971355 971646 -161628284 - AluSx SINE Alu -8 304 14 4671 79 92 0 chrX 971965 972597 -161627333 - LTR8 LTR ERV1 -1 690 1 2545 116 83 2 chrX 973115 973511 -161626419 + MSTA LTR MaLR 1 428 0 2112 128 0 0 chrX 973616 973906 -161626024 + AluSx SINE Alu 1 290 -22 366 244 0 0 chrX 974070 974205 -161625725 + CT-rich Low_complexity Low_complexity 2 136 0 598 186 6 6 chrX 974218 974379 -161625551 + CT-rich Low_complexity Low_complexity 2 162 0 409 239 6 6 chrX 974396 974572 -161625358 + CT-rich Low_complexity Low_complexity 1 176 0 266 300 33 0 chrX 974592 974682 -161625248 + CT-rich Low_complexity Low_complexity 2 94 0 1683 181 23 13 chrX 974899 975208 -161624722 + AluJo SINE Alu 1 312 0 2189 106 7 3 chrX 975493 975786 -161624144 + AluSx SINE Alu 1 294 -18 2283 92 0 3 chrX 976238 976530 -161623400 + AluSc SINE Alu 1 291 -18 21 0 0 0 chrX 976530 976551 -161623379 + AT_rich Low_complexity Low_complexity 1 21 0 2147 137 0 3 chrX 976618 976924 -161623006 - AluSx SINE Alu -4 308 4 2086 71 0 8 chrX 977487 977742 -161622188 + AluSq SINE Alu 1 253 -60 924 182 18 0 chrX 977742 977907 -161622023 + AluJb SINE Alu 145 312 0 905 126 0 14 chrX 978416 978559 -161621371 - FRAM SINE Alu -3 173 33 29 0 0 0 chrX 978905 978934 -161620996 + AT_rich Low_complexity Low_complexity 1 29 0 211 237 40 45 chrX 979190 979367 -161620563 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 393 203 38 30 chrX 979292 979662 -161620268 + (TA)n Simple_repeat Simple_repeat 1 372 0 750 231 40 5 chrX 980141 980340 -161619590 + MER20 DNA MER1_type 7 212 -7 224 256 33 44 chrX 980827 981007 -161618923 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 222 192 62 27 chrX 980942 981088 -161618842 + (TA)n Simple_repeat Simple_repeat 1 151 0 * 230 259 25 49 chrX 981083 981245 -161618685 + (TATAA)n Simple_repeat Simple_repeat 5 162 0 210 241 59 6 chrX 981331 981501 -161618429 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 328 166 44 61 chrX 981435 981616 -161618314 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 426 133 0 53 chrX 981811 981886 -161618044 - AluS SINE Alu -246 72 2 30 27 0 0 chrX 981921 981958 -161617972 + AT_rich Low_complexity Low_complexity 1 37 0 2144 122 21 0 chrX 982185 982473 -161617457 - AluSq SINE Alu -19 294 1 2203 111 9 19 chrX 982592 982907 -161617023 + AluSx SINE Alu 1 312 0 401 129 14 0 chrX 982908 982978 -161616952 + (TA)n Simple_repeat Simple_repeat 1 71 0 313 156 0 78 chrX 983119 983196 -161616734 + MER53 DNA DNA 119 189 0 1850 128 28 24 chrX 984328 984616 -161615314 + AluJo SINE Alu 1 289 -23 937 135 0 0 chrX 985837 985970 -161613960 - L1PA16 LINE L1 -248 5918 5786 805 167 177 37 chrX 985966 986181 -161613749 + L1PA16 LINE L1 5922 6166 0 * 239 53 0 26 chrX 986272 986310 -161613620 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1769 165 3 7 chrX 986344 986629 -161613301 - AluJb SINE Alu -5 307 24 1934 147 0 20 chrX 986932 987224 -161612706 - AluJo SINE Alu -26 286 1 1774 166 39 3 chrX 987624 987908 -161612022 + AluJo SINE Alu 1 294 -18 425 237 59 25 chrX 987997 988115 -161611815 - MLT1J LTR MaLR -164 347 226 1751 174 7 3 chrX 988341 988639 -161611291 - AluJo SINE Alu -13 299 1 2163 127 0 7 chrX 989321 989628 -161610302 + AluSx SINE Alu 1 305 -7 1752 149 57 20 chrX 990344 990645 -161609285 + AluJb SINE Alu 1 312 0 2651 46 0 0 chrX 990648 990955 -161608975 + AluY SINE Alu 1 307 -4 267 257 36 36 chrX 991261 991401 -161608529 + (TA)n Simple_repeat Simple_repeat 1 140 0 1644 163 41 24 chrX 992048 992222 -161607708 - AluJb SINE Alu -13 299 116 303 49 0 0 chrX 992222 992263 -161607667 + (TG)n Simple_repeat Simple_repeat 2 42 0 1644 163 41 24 chrX 992263 992382 -161607548 - AluJb SINE Alu -196 116 1 1841 171 3 0 chrX 993616 993942 -161605988 - AluJo SINE Alu 0 312 1 836 150 111 28 chrX 994054 994234 -161605696 - MER4E-int LTR ERV1 -1653 5105 4911 1658 174 0 7 chrX 994234 994516 -161605414 - MER4E LTR ERV1 0 779 500 3508 138 29 16 chrX 994530 995090 -161604840 + MER50 LTR ERV1 1 571 -163 2430 76 0 7 chrX 995090 995392 -161604538 - AluSq SINE Alu -13 300 1 3508 138 29 16 chrX 995392 995411 -161604519 + MER50 LTR ERV1 571 588 -146 1001 137 18 12 chrX 995411 995579 -161604351 - MER4E-int LTR ERV1 -2421 4337 4169 1600 99 5 9 chrX 995579 995792 -161604138 + AluSq SINE Alu 85 296 -17 471 138 0 0 chrX 995808 995888 -161604042 - MER4E-int LTR ERV1 -2572 4186 4107 2881 118 60 128 chrX 995910 996017 -161603913 + MER4A LTR ERV1 2 115 -664 207 0 0 0 chrX 996017 996040 -161603890 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2881 118 60 128 chrX 996040 996638 -161603292 + MER4A LTR ERV1 115 779 0 769 145 7 62 chrX 996638 996783 -161603147 - MER4E-int LTR ERV1 -2653 4105 3969 281 186 17 0 chrX 996783 996842 -161603088 + MER72 LTR ERV1 663 722 0 4459 105 2 3 chrX 996865 997466 -161602464 - MER4A LTR ERV1 0 600 1 4899 136 8 45 chrX 997466 997478 -161602452 - MER4E-int LTR ERV1 -2794 3964 3953 2061 159 14 30 chrX 997478 997848 -161602082 + THE1B LTR MaLR 1 364 0 4899 136 8 45 chrX 997848 998181 -161601749 - MER4E-int LTR ERV1 -2805 3953 3609 2101 134 0 3 chrX 998181 998473 -161601457 + AluSx SINE Alu 5 295 -17 4899 136 8 45 chrX 998473 998575 -161601355 - MER4E-int LTR ERV1 -3149 3609 3505 1477 115 55 0 chrX 998575 998793 -161601137 - MER30 DNA MER1_type 0 230 1 4899 136 8 45 chrX 998793 999187 -161600743 - MER4E-int LTR ERV1 -3253 3505 3152 1379 201 21 97 chrX 999187 999471 -161600459 + LTR9 LTR ERV1 1 305 -307 2293 83 0 10 chrX 999471 999793 -161600137 + AluSq SINE Alu 1 319 0 1379 201 21 97 chrX 999793 999847 -161600083 + LTR9 LTR ERV1 305 305 -307 1998 91 4 0 chrX 999847 1000101 -161599829 + AluSp SINE Alu 47 301 -12 1379 201 21 97 chrX 1000101 1000183 -161599747 + LTR9 LTR ERV1 304 391 -221 936 184 116 54 chrX 1000161 1000438 -161599492 + LTR19C LTR ERV1 486 779 0 * 1558 151 36 4 chrX 1000439 1000717 -161599213 - MER4E-int LTR ERV1 -3604 3154 2868 963 271 43 88 chrX 1000728 1001237 -161598693 + LTR1B LTR ERV1 39 524 -302 12676 150 64 73 chrX 1001344 1001569 -161598361 - MER4E-int LTR ERV1 -3885 2873 2647 1619 163 10 27 chrX 1001569 1001869 -161598061 + AluJo SINE Alu 1 295 -17 12676 150 64 73 chrX 1001869 1002479 -161597451 - MER4E-int LTR ERV1 -4111 2647 2033 2212 119 0 10 chrX 1002479 1002781 -161597149 - AluSg SINE Alu -11 299 1 12676 150 64 73 chrX 1002781 1002858 -161597072 - MER4E-int LTR ERV1 -4725 2033 1957 2181 119 0 3 chrX 1002858 1003161 -161596769 + AluSx SINE Alu 1 302 -10 12676 150 64 73 chrX 1003161 1004065 -161595865 - MER4E-int LTR ERV1 -4801 1957 1046 2274 105 20 0 chrX 1004065 1004371 -161595559 + AluSx SINE Alu 1 312 0 12676 150 64 73 chrX 1004371 1005445 -161594485 - MER4E-int LTR ERV1 -5712 1046 6 2365 159 84 16 chrX 1005449 1005889 -161594041 - MER4E LTR ERV1 0 779 310 972 219 21 29 chrX 1005889 1006095 -161593835 + L1MC4 LINE L1 7316 7521 -521 2226 110 0 0 chrX 1006095 1006394 -161593536 + AluSx SINE Alu 1 299 -13 972 219 21 29 chrX 1006394 1006429 -161593501 + L1MC4 LINE L1 7521 7555 -487 232 254 59 35 chrX 1006463 1006632 -161593298 - L1M4 LINE L1 -3861 2285 2113 1666 155 3 91 chrX 1007054 1007073 -161592857 - AluJo SINE Alu -6 306 287 180 0 0 0 chrX 1007073 1007093 -161592837 + (TAG)n Simple_repeat Simple_repeat 1 20 0 1666 155 3 91 chrX 1007093 1007402 -161592528 - AluJo SINE Alu -25 287 7 2135 122 70 14 chrX 1007573 1007917 -161592013 + THE1B LTR MaLR 1 363 -1 23 33 0 0 chrX 1008364 1008394 -161591536 + AT_rich Low_complexity Low_complexity 1 30 0 323 34 134 0 chrX 1008394 1008513 -161591417 + (TA)n Simple_repeat Simple_repeat 2 136 0 396 222 0 30 chrX 1008516 1008615 -161591315 - L1MA7 LINE L1 -25 6266 6171 * 427 149 14 0 chrX 1008613 1008687 -161591243 + L1MA7 LINE L1 6043 6117 -174 281 308 47 0 chrX 1008794 1008901 -161591029 - MIR SINE MIR -52 210 99 2005 60 0 8 chrX 1009348 1009598 -161590332 + AluSq SINE Alu 1 248 -65 457 118 13 0 chrX 1009816 1009892 -161590038 + Alu SINE Alu 225 301 -10 437 132 44 22 chrX 1009892 1009983 -161589947 - L1MB3 LINE L1 -5 6178 6086 2088 121 0 3 chrX 1009985 1010267 -161589663 + AluSx SINE Alu 6 286 -26 512 101 14 0 chrX 1010310 1010379 -161589551 + AluJ/FLAM SINE Alu 9 78 -234 1857 166 130 13 chrX 1010409 1010801 -161589129 + MER66B LTR ERV1 48 485 -1 479 284 132 11 chrX 1011052 1011242 -161588688 - MIR SINE MIR -2 260 48 217 115 19 39 chrX 1012537 1012589 -161587341 + CT-rich Low_complexity Low_complexity 3 53 0 661 169 11 33 chrX 1012605 1012788 -161587142 + CT-rich Low_complexity Low_complexity 2 180 0 1146 153 0 0 chrX 1012846 1013023 -161586907 - AluSg/x SINE Alu 0 310 134 385 239 69 96 chrX 1013169 1013387 -161586543 + MLT1L LTR MaLR 225 461 -75 1380 235 72 70 chrX 1013966 1014013 -161585917 + MER74B LTR ERVL 57 102 -520 1570 166 72 11 chrX 1014013 1014291 -161585639 - AluJo SINE Alu -17 295 1 1380 235 72 70 chrX 1014291 1014371 -161585559 + MER74B LTR ERVL 102 180 -442 1924 127 81 35 chrX 1014371 1014718 -161585212 + THE1B LTR MaLR 2 364 0 1380 235 72 70 chrX 1014718 1015129 -161584801 + MER74B LTR ERVL 180 597 -25 530 178 139 0 chrX 1015142 1015243 -161584687 + FLAM_C SINE Alu 4 118 -15 32 0 0 0 chrX 1015243 1015275 -161584655 + AT_rich Low_complexity Low_complexity 1 32 0 2183 117 0 0 chrX 1015328 1015635 -161584295 + AluSx SINE Alu 1 307 0 324 158 0 0 chrX 1015978 1016035 -161583895 + GA-rich Low_complexity Low_complexity 3 59 0 1263 82 10 46 chrX 1016055 1016250 -161583680 - AluSg/x SINE Alu -4 306 119 206 398 12 12 chrX 1016458 1016619 -161583311 + GA-rich Low_complexity Low_complexity 3 163 0 * 239 321 0 42 chrX 1016577 1016745 -161583185 + A-rich Low_complexity Low_complexity 2 162 0 302 62 0 0 chrX 1016883 1016931 -161582999 + AluSp/q SINE Alu 256 303 0 679 270 42 5 chrX 1017257 1017472 -161582458 + LTR16C LTR ERVL 224 446 -45 22 0 0 0 chrX 1017508 1017530 -161582400 + AT_rich Low_complexity Low_complexity 1 22 0 1650 174 7 37 chrX 1017530 1017829 -161582101 - AluJo SINE Alu -22 290 1 1997 138 7 0 chrX 1017844 1018141 -161581789 - AluSx SINE Alu -11 301 3 1742 185 7 0 chrX 1019768 1020071 -161579859 - 7SLRNA srpRNA srpRNA 0 320 16 1637 201 0 26 chrX 1020139 1020448 -161579482 + AluJo SINE Alu 1 301 -11 1143 82 0 0 chrX 1020749 1020884 -161579046 + AluSx SINE Alu 1 135 -178 40424 73 10 6 chrX 1020895 1027035 -161572895 + L1PA6 LINE L1 11 6174 0 1049 189 0 0 chrX 1027051 1027220 -161572710 + AluSx SINE Alu 129 297 -15 1712 147 41 10 chrX 1027385 1027678 -161572252 + AluJo SINE Alu 1 302 -10 240 301 27 0 chrX 1028616 1028689 -161571241 + CT-rich Low_complexity Low_complexity 5 79 0 310 97 0 32 chrX 1028699 1028761 -161571169 + (TG)n Simple_repeat Simple_repeat 2 61 0 1834 98 8 0 chrX 1029193 1029438 -161570492 + AluSx SINE Alu 50 296 -16 1804 138 0 56 chrX 1029976 1030295 -161569635 - AluJo SINE Alu -11 301 1 28 0 0 0 chrX 1030830 1030858 -161569072 + AT_rich Low_complexity Low_complexity 1 28 0 1714 137 63 4 chrX 1030900 1031171 -161568759 - AluJo SINE Alu -17 295 9 229 155 0 71 chrX 1031239 1031323 -161568607 + T-rich Low_complexity Low_complexity 1 78 0 3278 170 17 7 chrX 1031346 1031923 -161568007 - L1MA8 LINE L1 -13 6278 5696 2865 69 6 0 chrX 1032156 1032506 -161567424 - L1PB1 LINE L1 -7 6144 5793 294 29 0 0 chrX 1032506 1032541 -161567389 + (TG)n Simple_repeat Simple_repeat 1 35 0 2046 96 25 53 chrX 1032743 1032853 -161567077 - L1PB1 LINE L1 -364 5787 5675 264 30 0 0 chrX 1032853 1032886 -161567044 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2133 108 0 0 chrX 1032886 1033165 -161566765 - AluSx SINE Alu -33 279 1 2046 96 25 53 chrX 1033165 1033375 -161566555 - L1PB1 LINE L1 -474 5677 5475 24 85 0 0 chrX 1033873 1033932 -161565998 + AT_rich Low_complexity Low_complexity 1 59 0 667 171 0 16 chrX 1033945 1034068 -161565862 - L1MA5A LINE L1 -5 6292 6172 498 278 179 0 chrX 1034089 1034251 -161565679 + MIR SINE MIR 42 232 -30 236 210 30 10 chrX 1034335 1034648 -161565282 + (TA)n Simple_repeat Simple_repeat 1 319 0 264 184 41 0 chrX 1034667 1034814 -161565116 + (TA)n Simple_repeat Simple_repeat 1 153 0 534 259 179 0 chrX 1034847 1035009 -161564921 - MIR SINE MIR -30 232 42 290 250 35 43 chrX 1035030 1035146 -161564784 + L1MA5A LINE L1 6172 6286 -11 21 0 0 0 chrX 1035146 1035167 -161564763 + AT_rich Low_complexity Low_complexity 1 21 0 314 197 17 11 chrX 1035167 1035345 -161564585 + (TA)n Simple_repeat Simple_repeat 1 179 0 2167 151 34 77 chrX 1036098 1036594 -161563336 - L1MA8 LINE L1 -1 6290 5816 469 210 4 4 chrX 1036950 1037188 -161562742 + CT-rich Low_complexity Low_complexity 1 238 0 4023 99 4 4 chrX 1037320 1037855 -161562075 + L1PA11 LINE L1 5639 6173 -1 2635 133 70 0 chrX 1038368 1038766 -161561164 - MSTA LTR MaLR 0 428 3 2755 134 5 2 chrX 1038768 1039171 -161560759 - MSTA-int LTR MaLR 0 1651 1248 437 353 95 17 chrX 1040105 1040400 -161559530 + L1MC4a LINE L1 5612 5929 -1879 1168 0 38 13 chrX 1040530 1040689 -161559241 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 695 205 0 0 chrX 1040690 1040802 -161559128 - FLAM_A SINE Alu -25 117 6 2021 166 28 8 chrX 1041129 1041485 -161558445 + MLT1A1 LTR MaLR 1 363 -2 1909 179 65 3 chrX 1042268 1042637 -161557293 - MER89 LTR ERV1 0 559 168 1143 247 0 0 chrX 1042960 1043183 -161556747 - MER58A DNA MER1_type 0 224 2 283 257 14 0 chrX 1043303 1043373 -161556557 + MER34C LTR ERV1 24 94 -491 767 199 0 0 chrX 1043375 1043529 -161556401 + FRAM SINE Alu 1 62 0 247 237 17 0 chrX 1043894 1043953 -161555977 + LTR48B LTR ERV1 1 60 -584 1053 220 46 85 chrX 1044175 1044440 -161555490 + MER39 LTR ERV1 150 424 -283 1696 157 3 21 chrX 1044440 1044727 -161555203 + AluSx SINE Alu 1 282 -30 1053 220 46 85 chrX 1044727 1044909 -161555021 + MER39 LTR ERV1 424 707 0 200 122 0 49 chrX 1045527 1045568 -161554362 + (GAA)n Simple_repeat Simple_repeat 1 39 0 1446 185 45 24 chrX 1046922 1047209 -161552721 + AluJb SINE Alu 1 293 -19 1794 80 4 4 chrX 1047710 1047936 -161551994 + AluSc SINE Alu 1 226 -83 32 0 0 0 chrX 1048120 1048152 -161551778 + AT_rich Low_complexity Low_complexity 1 32 0 2184 91 3 0 chrX 1048152 1048437 -161551493 - AluY SINE Alu -25 286 1 3591 58 9 0 chrX 1048547 1048979 -161550951 + MLT2A1 LTR ERVL 1 436 -8 1380 160 43 19 chrX 1049472 1049728 -161550202 - MLT2C2 LTR ERVL -5 459 198 1408 144 0 0 chrX 1049728 1049943 -161549987 - AluSg/x SINE Alu -13 297 83 1141 179 25 0 chrX 1049943 1050144 -161549786 - MLT2C1 LTR ERVL -191 206 1 311 81 40 14 chrX 1050393 1050467 -161549463 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 788 177 0 48 chrX 1050485 1050632 -161549298 + FLAM_C SINE Alu 2 141 -2 1817 192 73 84 chrX 1050634 1051180 -161548750 - LTR64 LTR ERVK -18 540 1 255 109 46 45 chrX 1051183 1051241 -161548689 + MLT2B2 LTR ERVL 475 515 0 427 122 73 0 chrX 1052376 1052458 -161547472 - L1MC2 LINE L1 -2 6342 6255 3458 110 15 68 chrX 1052462 1052544 -161547386 - MER4B LTR ERV1 0 779 694 4289 141 5 11 chrX 1052544 1053183 -161546747 - MER41B LTR ERV1 0 635 1 3458 110 15 68 chrX 1053183 1053713 -161546217 - MER4B LTR ERV1 -85 694 32 2179 113 3 3 chrX 1053713 1054013 -161545917 - AluSx SINE Alu -12 300 1 3458 110 15 68 chrX 1054013 1054044 -161545886 - MER4B LTR ERV1 -747 32 1 269 216 0 0 chrX 1054069 1054120 -161545810 - L1MC2 LINE L1 -129 6215 6165 2268 141 18 39 chrX 1054122 1054638 -161545292 - MER4A LTR ERV1 -2 662 90 1592 97 63 295 chrX 1054650 1055375 -161544555 - LTR12 LTR ERV1 -156 558 2 650 116 0 11 chrX 1055375 1055470 -161544460 - MER4A LTR ERV1 -570 94 1 394 174 12 23 chrX 1055470 1055556 -161544374 - L1MC2 LINE L1 -176 6168 6084 1809 128 4 0 chrX 1055663 1055921 -161544009 - AluSx SINE Alu -53 259 1 1466 219 29 0 chrX 1056021 1056299 -161543631 - AluJo SINE Alu -26 286 1 2009 158 0 0 chrX 1056306 1056617 -161543313 - AluJb SINE Alu -1 311 1 2167 236 33 9 chrX 1056617 1057159 -161542771 - L1MB5 LINE L1 -32 6142 5615 2278 104 7 0 chrX 1057159 1057458 -161542472 - AluSp SINE Alu -12 301 1 2167 236 33 9 chrX 1057458 1057476 -161542454 - L1MB5 LINE L1 -559 5615 5599 1950 148 3 10 chrX 1057496 1057806 -161542124 + AluSx SINE Alu 5 312 0 495 113 0 0 chrX 1058012 1058074 -161541856 + AluSc SINE Alu 2 63 -250 1494 114 0 0 chrX 1058074 1058267 -161541663 + AluSc SINE Alu 101 293 -16 2107 146 14 6 chrX 1058274 1058623 -161541307 - MLT1A1 LTR MaLR -2 363 12 1217 161 21 0 chrX 1058908 1059101 -161540829 + AluJo SINE Alu 6 202 -110 2081 143 0 10 chrX 1059110 1059418 -161540512 - AluSx SINE Alu -7 305 1 205 217 57 38 chrX 1060038 1060144 -161539786 + (TCCA)n Simple_repeat Simple_repeat 3 110 0 545 219 24 0 chrX 1060144 1060440 -161539490 + (TCTA)n Simple_repeat Simple_repeat 1 303 0 204 258 16 0 chrX 1060503 1060565 -161539365 + (TA)n Simple_repeat Simple_repeat 2 64 0 * 209 194 0 0 chrX 1060530 1060566 -161539364 + (CATA)n Simple_repeat Simple_repeat 2 37 0 310 298 16 8 chrX 1060598 1060719 -161539211 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 671 132 17 35 chrX 1060741 1060915 -161539015 + (TCTA)n Simple_repeat Simple_repeat 1 171 0 302 296 30 15 chrX 1060917 1061049 -161538881 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 * 332 273 0 48 chrX 1061001 1061188 -161538742 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 * 334 298 16 8 chrX 1061100 1061224 -161538706 + (TCCA)n Simple_repeat Simple_repeat 3 127 0 644 126 30 18 chrX 1061257 1061424 -161538506 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 339 170 9 27 chrX 1061436 1061548 -161538382 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 655 218 12 98 chrX 1062502 1062746 -161537184 + L1MA4 LINE L1 6077 6298 -2 221 89 36 36 chrX 1063036 1063092 -161536838 + (TA)n Simple_repeat Simple_repeat 2 57 0 198 71 0 0 chrX 1063120 1063148 -161536782 + (TA)n Simple_repeat Simple_repeat 2 29 0 1351 101 291 0 chrX 1063578 1063805 -161536125 + AluSx SINE Alu 1 293 -9 1089 206 11 35 chrX 1064268 1064308 -161535622 - MLT1D LTR MaLR 0 505 466 1688 202 3 3 chrX 1064308 1064605 -161535325 + AluJb SINE Alu 1 297 -15 1089 206 11 35 chrX 1064605 1065018 -161534912 - MLT1D LTR MaLR -39 466 2 22 0 0 0 chrX 1065064 1065086 -161534844 + AT_rich Low_complexity Low_complexity 1 22 0 962 211 88 53 chrX 1065089 1065430 -161534500 - MLT1C LTR MaLR -114 353 1 802 197 185 31 chrX 1065440 1065736 -161534194 - MLT1C LTR MaLR -144 361 1 22 56 0 0 chrX 1065745 1065781 -161534149 + AT_rich Low_complexity Low_complexity 1 36 0 2862 176 94 25 chrX 1066198 1066336 -161533594 - LTR26 LTR ERV1 0 603 476 2034 136 7 0 chrX 1066336 1066631 -161533299 - AluSq SINE Alu -16 297 1 2862 176 94 25 chrX 1066631 1067056 -161532874 - LTR26 LTR ERV1 -127 476 1 1375 184 4 0 chrX 1067692 1067926 -161532004 - L1PA16 LINE L1 -9 6157 5923 290 214 11 34 chrX 1067942 1068031 -161531899 - L1MA9 LINE L1 -30 6282 6196 1765 143 7 33 chrX 1068157 1068430 -161531500 + AluJo SINE Alu 1 266 -46 1879 107 4 32 chrX 1068430 1068686 -161531244 - L1PA16 LINE L1 -230 5936 5687 1805 193 0 0 chrX 1068686 1068981 -161530949 - AluJb SINE Alu -17 295 1 1879 107 4 32 chrX 1068981 1069004 -161530926 - L1PA16 LINE L1 -479 5687 5665 24 53 0 0 chrX 1069383 1069421 -161530509 + AT_rich Low_complexity Low_complexity 1 38 0 200 259 0 17 chrX 1069448 1069506 -161530424 + (TG)n Simple_repeat Simple_repeat 2 58 0 643 118 57 10 chrX 1069537 1069946 -161529984 + (TAGA)n Simple_repeat Simple_repeat 1 428 0 315 96 0 0 chrX 1069946 1069998 -161529932 + (CATA)n Simple_repeat Simple_repeat 1 52 0 2245 69 24 0 chrX 1070657 1070945 -161528985 + AluY SINE Alu 1 295 -16 4275 141 38 0 chrX 1071026 1071684 -161528246 - L1PA16 LINE L1 -8 6158 5476 356 121 4 0 chrX 1071691 1071811 -161528119 - MADE1 DNA Mariner 0 80 1 195 259 121 35 chrX 1071831 1071947 -161527983 - MIR SINE MIR -1 261 136 226 235 41 24 chrX 1072545 1072715 -161527215 + (TA)n Simple_repeat Simple_repeat 1 173 0 22 35 0 0 chrX 1072724 1072753 -161527177 + AT_rich Low_complexity Low_complexity 1 29 0 823 178 0 0 chrX 1072790 1072919 -161527011 + FRAM SINE Alu 23 151 -25 22 80 0 0 chrX 1072951 1073001 -161526929 + AT_rich Low_complexity Low_complexity 1 50 0 382 170 33 55 chrX 1073105 1073287 -161526643 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 294 211 51 23 chrX 1073641 1073816 -161526114 + (TA)n Simple_repeat Simple_repeat 1 180 0 227 186 43 0 chrX 1073879 1073949 -161525981 + (TA)n Simple_repeat Simple_repeat 2 74 0 949 264 55 42 chrX 1074563 1074942 -161524988 + MLT1B LTR MaLR 1 384 -6 2007 99 70 0 chrX 1075514 1075787 -161524143 + AluSp SINE Alu 1 292 -21 551 15 15 0 chrX 1075798 1075866 -161524064 + (CA)n Simple_repeat Simple_repeat 2 70 0 736 174 0 43 chrX 1075902 1076040 -161523890 - FLAM_C SINE Alu -9 134 3 2400 130 30 25 chrX 1076166 1076528 -161523402 + THE1B LTR MaLR 1 364 0 391 206 0 11 chrX 1076689 1076781 -161523149 - L1MC4 LINE L1 -17 8025 7935 186 133 0 0 chrX 1076819 1076849 -161523081 + (TC)n Simple_repeat Simple_repeat 2 31 0 1460 237 72 86 chrX 1076858 1077604 -161522326 - L1MC4 LINE L1 -135 7907 7172 25 31 0 0 chrX 1077614 1077646 -161522284 + AT_rich Low_complexity Low_complexity 1 32 0 2296 107 3 0 chrX 1078374 1078682 -161521248 - AluSg1 SINE Alu 0 309 1 3173 123 11 0 chrX 1079933 1080388 -161519542 - L1PB2 LINE L1 -9 6142 5683 2291 75 4 0 chrX 1080432 1080711 -161519219 + AluSc SINE Alu 13 292 -17 506 260 82 41 chrX 1080936 1081155 -161518775 - L2 LINE L2 -52 3261 3034 24 0 0 0 chrX 1081193 1081217 -161518713 + AT_rich Low_complexity Low_complexity 1 24 0 235 347 31 0 chrX 1081217 1081315 -161518615 - L2 LINE L2 -277 3036 2936 412 172 35 0 chrX 1081892 1081979 -161517951 - L1MB3 LINE L1 0 6183 6094 2219 166 20 43 chrX 1081982 1082427 -161517503 - L1MA4 LINE L1 -280 6020 5586 2138 123 3 3 chrX 1083243 1083553 -161516377 - AluSq SINE Alu -3 310 1 1629 156 7 19 chrX 1084664 1084933 -161514997 + MER2 DNA MER2_type 1 266 -79 651 238 10 10 chrX 1084935 1085141 -161514789 + L1M4 LINE L1 4993 5198 -948 211 216 0 54 chrX 1085164 1085238 -161514692 + A-rich Low_complexity Low_complexity 1 70 0 323 277 0 0 chrX 1085264 1085329 -161514601 - MER2 DNA MER2_type -1 344 280 424 195 80 0 chrX 1085332 1085445 -161514485 + L1M4 LINE L1 4643 4764 -1382 29 47 0 0 chrX 1085485 1085528 -161514402 + AT_rich Low_complexity Low_complexity 1 43 0 2518 258 76 8 chrX 1085560 1086508 -161513422 - L1M4 LINE L1 -948 5198 4187 2222 109 3 0 chrX 1086528 1086822 -161513108 + AluSq SINE Alu 6 300 -13 2191 125 3 0 chrX 1086826 1087129 -161512801 + AluSp SINE Alu 1 304 -9 21 36 0 0 chrX 1087208 1087236 -161512694 + AT_rich Low_complexity Low_complexity 1 28 0 1558 151 44 4 chrX 1087236 1087507 -161512423 - L1PA16 LINE L1 -10 6156 5875 475 246 41 8 chrX 1088212 1088334 -161511596 + L1MA9 LINE L1 6178 6303 -9 2157 128 0 3 chrX 1088403 1088708 -161511222 + AluSx SINE Alu 1 304 -8 180 111 0 0 chrX 1088914 1088941 -161510989 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 1470 156 7 68 chrX 1089136 1089355 -161510575 - L1MA5A LINE L1 -15 6282 6084 3771 132 4 9 chrX 1089355 1089885 -161510045 - MER1A DNA MER1_type 0 527 1 1470 156 7 68 chrX 1089885 1089960 -161509970 - L1MA5A LINE L1 -213 6084 6006 2196 124 0 0 chrX 1090970 1091268 -161508662 + AluSx SINE Alu 1 298 -14 1069 203 64 0 chrX 1091443 1091679 -161508251 - AluJo SINE Alu -61 251 1 1775 141 163 68 chrX 1091929 1092298 -161507632 - MER4A LTR ERV1 0 664 261 481 111 100 11 chrX 1092298 1092388 -161507542 - MER4A LTR ERV1 -566 98 1 1020 211 26 103 chrX 1092613 1093029 -161506901 - MLT1B LTR MaLR 0 390 7 181 336 26 43 chrX 1093058 1093174 -161506756 - MIR SINE MIR -139 123 10 2372 181 37 45 chrX 1093178 1093446 -161506484 + MER66B LTR ERV1 1 265 -221 1912 127 0 7 chrX 1093446 1093722 -161506208 + AluSx SINE Alu 36 309 -3 2372 181 37 45 chrX 1093722 1093940 -161505990 + MER66B LTR ERV1 265 483 -3 1184 130 52 23 chrX 1093983 1094227 -161505703 + L1PB1 LINE L1 5693 5941 -215 211 403 21 27 chrX 1094532 1094718 -161505212 - MIR3 SINE MIR -5 203 19 345 337 46 17 chrX 1094894 1095069 -161504861 + MIR SINE MIR 73 252 -10 1942 149 3 0 chrX 1096706 1097008 -161502922 - AluJb SINE Alu -9 303 1 265 226 20 0 chrX 1097231 1097302 -161502628 - MER45A DNA AcHobo -1 177 103 2948 113 5 27 chrX 1097324 1097607 -161502323 + MER57B LTR ERV1 1 272 -162 2352 52 7 29 chrX 1097607 1097914 -161502016 - AluY SINE Alu -11 300 1 2948 113 5 27 chrX 1097914 1098074 -161501856 + MER57B LTR ERV1 272 434 0 265 200 0 0 chrX 1098074 1098124 -161501806 - MER45A DNA AcHobo -50 128 79 767 243 44 56 chrX 1098141 1098550 -161501380 - MER34B LTR ERV1 -8 557 76 1721 87 0 0 chrX 1098592 1098823 -161501107 + L1PA12 LINE L1 5813 6043 -125 1694 129 25 73 chrX 1098823 1099186 -161500744 - MER4A LTR ERV1 0 664 261 489 186 21 10 chrX 1099186 1099283 -161500647 - MER4A LTR ERV1 -566 98 1 423 91 0 0 chrX 1099283 1099338 -161500592 + L1PA13 LINE L1 6040 6094 -69 347 194 83 28 chrX 1099342 1099450 -161500480 - MER34C LTR ERV1 -435 150 37 7948 35 1 0 chrX 1099526 1101163 -161498767 - L1PA3 LINE L1 -2 6153 4514 3428 168 21 33 chrX 1101163 1101440 -161498490 - LTR51 LTR ERV1 -14 657 378 1796 154 48 7 chrX 1101440 1101732 -161498198 + AluJb SINE Alu 4 307 -5 3428 168 21 33 chrX 1101732 1101911 -161498019 - LTR51 LTR ERV1 -293 378 198 1806 173 0 20 chrX 1101911 1102206 -161497724 + AluJb SINE Alu 1 289 -23 3428 168 21 33 chrX 1102206 1102413 -161497517 - LTR51 LTR ERV1 -473 198 1 2172 197 10 18 chrX 1102636 1103037 -161496893 + MER57A LTR ERV1 2 399 -4 639 169 0 119 chrX 1103037 1103197 -161496733 - AluJb SINE Alu -23 289 149 1051 139 0 0 chrX 1103568 1103726 -161496204 + FRAM SINE Alu 12 169 -7 820 148 0 0 chrX 1103791 1103906 -161496024 + AluJ SINE Alu 5 119 -193 455 171 0 24 chrX 1103898 1103980 -161495950 - AluY SINE Alu -227 83 4 * 1036 203 5 0 chrX 1103987 1104184 -161495746 + AluJ SINE Alu 107 304 -8 2249 110 0 3 chrX 1104209 1104510 -161495420 + AluSg SINE Alu 1 300 -10 813 150 21 50 chrX 1104553 1104693 -161495237 + AluJo SINE Alu 1 136 -176 1114 214 18 7 chrX 1104833 1105109 -161494821 + L1MA4 LINE L1 6022 6300 0 333 351 61 63 chrX 1105389 1105565 -161494365 - L2 LINE L2 -164 3108 2933 1350 249 32 99 chrX 1105565 1105910 -161494020 + LTR45 LTR ERV1 1 368 -157 1824 166 10 13 chrX 1105910 1106223 -161493707 - AluJo SINE Alu 0 312 1 1350 249 32 99 chrX 1106223 1106372 -161493558 + LTR45 LTR ERV1 368 455 -70 1595 185 10 3 chrX 1106372 1106664 -161493266 + AluJb SINE Alu 6 299 -13 1350 249 32 99 chrX 1106664 1106731 -161493199 + LTR45 LTR ERV1 455 525 0 333 351 61 63 chrX 1106731 1107157 -161492773 - L2 LINE L2 -339 2933 2511 1738 180 7 16 chrX 1107294 1107599 -161492331 - AluSx SINE Alu -8 304 3 2236 118 0 6 chrX 1108440 1108754 -161491176 + AluSx SINE Alu 1 312 0 872 163 0 15 chrX 1109077 1109212 -161490718 - FLAM_C SINE Alu 0 133 1 792 233 81 106 chrX 1110044 1110537 -161489393 - MLT1D LTR MaLR -24 481 1 379 195 58 12 chrX 1110548 1110689 -161489241 - MLT1D LTR MaLR -123 360 191 797 178 0 0 chrX 1110802 1110920 -161489010 - FLAM_C SINE Alu -15 118 1 744 224 33 22 chrX 1111051 1111234 -161488696 - MLT1D LTR MaLR -320 185 1 222 105 0 0 chrX 1112704 1112742 -161487188 + (GA)n Simple_repeat Simple_repeat 2 39 0 509 105 30 63 chrX 1112742 1112986 -161486944 + (TAGA)n Simple_repeat Simple_repeat 1 235 0 604 48 29 19 chrX 1113006 1113109 -161486821 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 425 208 15 15 chrX 1113108 1113289 -161486641 + (TAGA)n Simple_repeat Simple_repeat 1 180 -465 * 2493 124 5 27 chrX 1113289 1113661 -161486269 + THE1B LTR MaLR 1 364 0 425 208 15 15 chrX 1113661 1113753 -161486177 + (TAGA)n Simple_repeat Simple_repeat 180 645 0 1779 162 0 32 chrX 1114765 1115074 -161484856 - AluJb SINE Alu -13 299 1 1240 236 0 0 chrX 1115157 1115399 -161484531 - AluJb SINE Alu -20 292 51 180 0 0 0 chrX 1115399 1115419 -161484511 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2089 119 0 4 chrX 1115419 1115696 -161484234 - AluSx SINE Alu -28 284 9 2202 167 29 12 chrX 1115703 1116122 -161483808 - L1MC1 LINE L1 -1 6332 5907 2196 113 0 0 chrX 1117172 1117500 -161482430 + AluSx SINE Alu 1 328 0 616 176 43 152 chrX 1118316 1118526 -161481404 - MER39B LTR ERV1 -402 251 65 324 127 0 0 chrX 1118547 1118602 -161481328 + (CA)n Simple_repeat Simple_repeat 2 56 0 1883 160 13 7 chrX 1118656 1118963 -161480967 + AluJb SINE Alu 1 309 -3 1070 153 49 0 chrX 1120196 1120399 -161479531 - MER65A LTR ERV1 0 445 233 899 143 0 0 chrX 1120399 1120532 -161479398 + FLAM_C SINE Alu 1 133 0 369 190 10 47 chrX 1120539 1120811 -161479119 + GA-rich Low_complexity Low_complexity 1 261 0 556 177 10 0 chrX 1122078 1122174 -161477756 - AluJ/FLAM SINE Alu -214 98 2 1006 143 20 31 chrX 1122176 1122372 -161477558 - MER39B LTR ERV1 -384 269 76 * 2600 91 0 6 chrX 1122355 1122707 -161477223 + MER41A LTR ERV1 205 554 0 374 100 17 0 chrX 1122707 1122767 -161477163 + MER4E LTR ERV1 706 766 0 231 114 0 0 chrX 1122913 1122948 -161476982 + (TC)n Simple_repeat Simple_repeat 1 35 0 225 254 48 0 chrX 1122955 1123018 -161476912 + CT-rich Low_complexity Low_complexity 3 68 0 395 185 31 17 chrX 1123029 1123403 -161476527 + CT-rich Low_complexity Low_complexity 1 379 0 731 313 47 49 chrX 1123528 1124042 -161475888 + MER34 LTR ERV1 1 513 -29 225 0 0 0 chrX 1124462 1124487 -161475443 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 911 137 6 22 chrX 1124533 1124716 -161475214 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1869 148 39 7 chrX 1124723 1125006 -161474924 - AluJo SINE Alu -19 293 2 357 145 0 0 chrX 1125766 1125842 -161474088 + (CA)n Simple_repeat Simple_repeat 2 77 0 206 174 0 22 chrX 1125880 1125926 -161474004 + T-rich Low_complexity Low_complexity 3 47 0 23 0 0 0 chrX 1126113 1126136 -161473794 + AT_rich Low_complexity Low_complexity 1 23 0 2423 87 0 13 chrX 1126761 1127071 -161472859 + AluSq SINE Alu 3 308 -5 3565 120 24 0 chrX 1127243 1127777 -161472153 + L1PB4 LINE L1 5610 6156 0 21 0 0 0 chrX 1127860 1127881 -161472049 + AT_rich Low_complexity Low_complexity 1 21 0 1201 225 30 27 chrX 1128082 1128380 -161471550 - MLT1C LTR MaLR 0 467 169 888 142 0 47 chrX 1128407 1128555 -161471375 - AluJb SINE Alu -171 141 1 242 156 44 22 chrX 1128559 1128604 -161471326 - MLT1C LTR MaLR -215 175 130 712 223 113 87 chrX 1128857 1129350 -161470580 + MER34C LTR ERV1 5 490 -75 1925 164 3 0 chrX 1130012 1130305 -161469625 - AluJb SINE Alu -18 294 1 1016 156 21 1 chrX 1130331 1130527 -161469403 + L1MB5 LINE L1 5613 5804 -370 1016 144 22 0 chrX 1130527 1130707 -161469223 + L1MB5 LINE L1 5980 6163 -11 1016 156 21 1 chrX 1130707 1130731 -161469199 + L1MB5 LINE L1 5804 6163 -11 1695 168 10 17 chrX 1130905 1131197 -161468733 - AluJb SINE Alu -22 290 1 839 171 0 36 chrX 1131197 1131337 -161468593 - AluJb SINE Alu -177 135 1 21 0 0 0 chrX 1131462 1131483 -161468447 + AT_rich Low_complexity Low_complexity 1 21 0 1617 161 4 11 chrX 1131484 1131744 -161468186 + AluJb SINE Alu 1 258 -54 31 26 0 0 chrX 1131756 1131794 -161468136 + AT_rich Low_complexity Low_complexity 1 38 0 216 184 0 0 chrX 1132364 1132413 -161467517 + (CA)n Simple_repeat Simple_repeat 1 49 0 2011 152 0 0 chrX 1132496 1132806 -161467124 + AluSx SINE Alu 1 310 -2 1830 176 0 28 chrX 1132921 1133240 -161466690 - AluJo SINE Alu -2 310 1 193 322 76 34 chrX 1133350 1133468 -161466462 + MIR3 SINE MIR 83 205 -3 750 180 0 22 chrX 1136324 1136463 -161463467 + FLAM_C SINE Alu 8 143 0 1516 180 60 7 chrX 1136471 1136755 -161463175 + AluJo SINE Alu 3 301 -11 189 0 0 0 chrX 1136935 1136956 -161462974 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2089 141 3 0 chrX 1137154 1137453 -161462477 - AluSx SINE Alu -12 300 1 1932 167 0 0 chrX 1137752 1138045 -161461885 - AluJo SINE Alu -19 293 1 1708 182 3 35 chrX 1138362 1138681 -161461249 + AluJo SINE Alu 1 309 -3 2272 90 0 29 chrX 1138788 1139100 -161460830 + AluSx SINE Alu 1 303 -9 1159 116 0 0 chrX 1139103 1139258 -161460672 + AluSg/x SINE Alu 141 295 -17 746 212 11 38 chrX 1139621 1139805 -161460125 + MLT1B LTR MaLR 2 180 -210 766 178 0 22 chrX 1139805 1139940 -161459990 + FLAM_C SINE Alu 2 133 -10 726 205 22 32 chrX 1139945 1140111 -161459819 + MLT1B LTR MaLR 176 341 -126 2132 118 29 50 chrX 1140111 1140494 -161459436 + THE1C LTR MaLR 1 375 0 726 205 22 32 chrX 1140494 1140512 -161459418 + MLT1B LTR MaLR 341 358 -109 497 193 28 0 chrX 1140520 1140665 -161459265 + (TA)n Simple_repeat Simple_repeat 1 149 0 2202 127 36 28 chrX 1140928 1141289 -161458641 + THE1B LTR MaLR 1 364 0 3958 113 0 11 chrX 1142281 1142841 -161457089 - MER41A LTR ERV1 0 554 1 1541 150 33 57 chrX 1142841 1143174 -161456756 + L1MC1 LINE L1 6009 6333 0 263 225 38 0 chrX 1143185 1143265 -161456665 + L1M4 LINE L1 5815 5897 -287 883 124 58 0 chrX 1143266 1143403 -161456527 - LTR12 LTR ERV1 -234 480 336 441 101 130 0 chrX 1143403 1143472 -161456458 + AluJb SINE Alu 209 286 -26 1804 154 20 29 chrX 1143741 1144047 -161455883 - AluJo SINE Alu -9 303 1 33 0 0 0 chrX 1144829 1144862 -161455068 + AT_rich Low_complexity Low_complexity 1 33 0 1269 173 18 162 chrX 1144867 1145317 -161454613 - L1PA15 LINE L1 0 6165 5781 262 127 1 52 chrX 1145339 1145397 -161454533 + L1P2 LINE L1 5774 5828 -327 312 267 0 22 chrX 1145431 1145521 -161454409 - L1MC4 LINE L1 -1339 6703 6616 211 257 14 14 chrX 1145522 1145561 -161454369 + (TA)n Simple_repeat Simple_repeat 1 42 -32 545 113 0 0 chrX 1145561 1145641 -161454289 + MADE1 DNA Mariner 1 80 0 211 257 14 14 chrX 1145641 1145675 -161454255 + (TA)n Simple_repeat Simple_repeat 41 74 0 923 151 0 0 chrX 1145676 1145822 -161454108 - L1PA15 LINE L1 -368 5788 5643 596 262 12 0 chrX 1146285 1146457 -161453473 - MER96B DNA MER1_type? -243 174 1 180 176 0 0 chrX 1146541 1146575 -161453355 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1726 195 7 0 chrX 1146614 1146912 -161453018 - AluJo SINE Alu -12 300 1 833 187 0 0 chrX 1146926 1147060 -161452870 - AluJo SINE Alu -178 134 1 225 176 0 0 chrX 1147080 1147114 -161452816 + Tigger5 DNA MER2_type 2273 2306 -17 315 206 14 14 chrX 1147164 1147237 -161452693 + Tigger5 DNA MER2_type 2251 2323 0 440 150 35 0 chrX 1147237 1147350 -161452580 + (TA)n Simple_repeat Simple_repeat 1 117 0 27 29 0 0 chrX 1147383 1147417 -161452513 + AT_rich Low_complexity Low_complexity 1 34 0 191 35 0 35 chrX 1147465 1147494 -161452436 + (TA)n Simple_repeat Simple_repeat 1 28 0 397 270 70 0 chrX 1147789 1147904 -161452026 + MER77 LTR ERV1 77 199 -406 1098 236 96 47 chrX 1147952 1148358 -161451572 + MER77 LTR ERV1 173 598 -7 357 109 0 0 chrX 1148550 1148605 -161451325 + (GA)n Simple_repeat Simple_repeat 2 56 0 2172 123 0 0 chrX 1149854 1150139 -161449791 + AluSx SINE Alu 11 295 -17 3231 86 36 2 chrX 1150969 1151410 -161448520 + L1PA13 LINE L1 5683 6138 -25 * 4547 119 1 35 chrX 1151402 1152118 -161447812 - L1PA15 LINE L1 -162 6003 5312 800 148 56 14 chrX 1152119 1152261 -161447669 + THE1C LTR MaLR 1 148 -227 1852 174 17 62 chrX 1152730 1153133 -161446797 + MLT1B LTR MaLR 3 387 -3 1598 161 56 7 chrX 1153179 1153465 -161446465 + MLT1A1 LTR MaLR 64 363 -2 685 242 6 0 chrX 1153599 1153756 -161446174 + L1PB4 LINE L1 5994 6151 -5 1756 175 9 62 chrX 1154749 1154794 -161445136 - L1MB8 LINE L1 -6 6172 6126 1637 195 30 0 chrX 1154794 1155091 -161444839 - AluJo SINE Alu -6 306 1 1756 175 9 62 chrX 1155091 1155467 -161444463 - L1MB8 LINE L1 -52 6126 5773 985 90 0 34 chrX 1155824 1156002 -161443928 + (TTCC)n Simple_repeat Simple_repeat 2 173 0 1653 173 10 33 chrX 1156026 1156508 -161443422 - AluJo SINE Alu 0 312 6 1283 237 58 89 chrX 1156640 1156928 -161443002 - MER77 LTR ERV1 -8 597 360 2415 156 44 2 chrX 1156928 1157339 -161442591 - MSTA LTR MaLR 0 428 1 1283 237 58 89 chrX 1157339 1157600 -161442330 - MER77 LTR ERV1 -245 360 92 310 125 42 0 chrX 1157749 1157797 -161442133 + MLT1D LTR MaLR 1 50 -455 277 188 42 0 chrX 1157798 1157846 -161442084 + MLT1D LTR MaLR 1 50 -455 239 81 54 0 chrX 1157854 1157891 -161442039 + MLT1D LTR MaLR 12 50 -455 1801 185 91 8 chrX 1157892 1158275 -161441655 + MLT1D LTR MaLR 1 415 -90 532 200 31 7 chrX 1158913 1159208 -161440722 + GA-rich Low_complexity Low_complexity 1 302 0 274 233 31 8 chrX 1159253 1159382 -161440548 + GA-rich Low_complexity Low_complexity 2 133 0 334 180 22 22 chrX 1159397 1159486 -161440444 + GA-rich Low_complexity Low_complexity 2 90 0 382 153 81 0 chrX 1159497 1159608 -161440322 + GA-rich Low_complexity Low_complexity 4 123 0 200 250 0 13 chrX 1159644 1159720 -161440210 + GA-rich Low_complexity Low_complexity 3 77 0 2000 131 166 66 chrX 1160738 1161149 -161438781 - LTR47A LTR ERVL 0 452 1 241 148 49 0 chrX 1162866 1162927 -161437003 + (TATG)n Simple_repeat Simple_repeat 4 67 0 2011 150 0 6 chrX 1163884 1164198 -161435732 - AluSx SINE Alu 0 312 1 904 198 51 42 chrX 1164366 1164583 -161435347 + MER20 DNA MER1_type 1 219 0 473 161 39 13 chrX 1164617 1164772 -161435158 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 2270 128 30 41 chrX 1164772 1165140 -161434790 - THE1B LTR MaLR 0 364 1 428 35 17 0 chrX 1165142 1165200 -161434730 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 724 207 93 5 chrX 1165204 1165397 -161434533 + MER20 DNA MER1_type 1 210 -9 291 140 0 0 chrX 1166861 1166911 -161433019 + (CATA)n Simple_repeat Simple_repeat 4 53 0 454 220 14 24 chrX 1167013 1167314 -161432616 + (TATATG)n Simple_repeat Simple_repeat 1 297 0 253 211 0 84 chrX 1167358 1167453 -161432477 - L1MC4 LINE L1 -1341 6701 6615 196 200 10 40 chrX 1167464 1167564 -161432366 + (TA)n Simple_repeat Simple_repeat 2 98 0 195 243 0 29 chrX 1167598 1167701 -161432229 + (TA)n Simple_repeat Simple_repeat 1 100 0 242 233 22 22 chrX 1167703 1167793 -161432137 + L1MC4 LINE L1 6614 6703 -1339 223 247 0 21 chrX 1167796 1167893 -161432037 + (TATG)n Simple_repeat Simple_repeat 4 98 0 21 36 0 0 chrX 1168779 1168807 -161431123 + AT_rich Low_complexity Low_complexity 1 28 0 647 196 0 6 chrX 1169104 1169283 -161430647 + GA-rich Low_complexity Low_complexity 2 179 0 455 212 7 0 chrX 1169378 1169524 -161430406 + GA-rich Low_complexity Low_complexity 2 148 0 2252 102 0 0 chrX 1169658 1169951 -161429979 - AluSx SINE Alu -13 299 7 415 182 107 16 chrX 1170033 1170154 -161429776 - L1MB4 LINE L1 -25 6155 6024 * 797 228 82 30 chrX 1170135 1170253 -161429677 + L1MB7 LINE L1 5692 5802 -382 2564 123 76 27 chrX 1170253 1170661 -161429269 - MSTA LTR MaLR 0 428 1 797 228 82 30 chrX 1170661 1170774 -161429156 + L1MB7 LINE L1 5802 5935 -249 1916 107 70 0 chrX 1170880 1171150 -161428780 + AluSx SINE Alu 3 291 -21 255 103 0 0 chrX 1171710 1171749 -161428181 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1932 186 55 28 chrX 1172212 1172743 -161427187 - MLT2A2 LTR ERVL 0 554 1 1319 234 64 39 chrX 1173990 1174425 -161425505 - MLT1C LTR MaLR 0 467 22 2291 125 36 22 chrX 1176144 1176503 -161423427 + THE1B LTR MaLR 1 364 0 1511 181 55 43 chrX 1176508 1176856 -161423074 + MLT1A2 LTR MaLR 23 374 0 746 270 99 69 chrX 1176859 1177239 -161422691 + MLT1D LTR MaLR 59 455 -50 2673 138 19 0 chrX 1177239 1177592 -161422338 - L1PB1 LINE L1 0 6151 5787 270 0 0 0 chrX 1177592 1177622 -161422308 + (TG)n Simple_repeat Simple_repeat 2 31 0 2673 138 19 0 chrX 1177622 1177681 -161422249 - L1PB1 LINE L1 -364 5787 5731 746 270 99 69 chrX 1177681 1177734 -161422196 + MLT1D LTR MaLR 455 505 0 3068 248 14 3 chrX 1178181 1178826 -161421104 + MER82 DNA MER2_type 1 652 -1 2237 97 0 13 chrX 1179475 1179773 -161420157 - AluSc SINE Alu -15 294 1 2051 129 20 0 chrX 1179773 1180067 -161419863 - AluSx SINE Alu -12 300 1 2145 174 14 8 chrX 1180092 1180455 -161419475 + MLT1A1 LTR MaLR 1 365 0 2597 71 0 0 chrX 1181156 1181467 -161418463 + AluY SINE Alu 1 311 0 768 179 19 13 chrX 1181774 1181930 -161418000 - L1MB3 LINE L1 -7 6176 6020 2478 96 8 22 chrX 1181956 1182321 -161417609 - L1PB1 LINE L1 -80 6071 5712 905 167 4 132 chrX 1182372 1182540 -161417390 + MER82 DNA MER2_type 212 337 -316 1664 165 0 112 chrX 1182540 1182879 -161417051 - AluJo SINE Alu -1 301 1 905 167 4 132 chrX 1182879 1182967 -161416963 + MER82 DNA MER2_type 337 435 -218 213 213 0 0 chrX 1182974 1183021 -161416909 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 293 52 9 chrX 1183833 1183949 -161415981 - L1MB7 LINE L1 -15 6169 6049 272 61 0 0 chrX 1183949 1183982 -161415948 - U2 snRNA snRNA -155 33 1 1760 188 31 53 chrX 1183986 1184402 -161415528 - L1MB5 LINE L1 -114 6060 5654 450 293 177 24 chrX 1184602 1184936 -161414994 + L2 LINE L2 2927 3311 -2 314 121 0 17 chrX 1185390 1185448 -161414482 + (TCC)n Simple_repeat Simple_repeat 1 57 0 801 205 118 46 chrX 1185448 1185643 -161414287 - AluJo SINE Alu -18 294 86 1385 165 5 22 chrX 1185643 1185867 -161414063 - AluJo SINE Alu -92 220 1 194 121 30 0 chrX 1187582 1187615 -161412315 + (CA)n Simple_repeat Simple_repeat 1 34 0 1884 148 13 10 chrX 1187862 1188167 -161411763 - AluJo SINE Alu -6 306 1 2525 120 3 0 chrX 1188189 1188555 -161411375 - L1PB4 LINE L1 0 6156 5790 1120 127 6 0 chrX 1188555 1188713 -161411217 + THE1B LTR MaLR 3 161 -203 8822 57 16 1 chrX 1188713 1190582 -161409348 - L1PA6 LINE L1 -4 6150 4287 1976 43 30 0 chrX 1190583 1190818 -161409112 + L1PA6 LINE L1 4045 4286 -1860 1141 115 72 48 chrX 1190818 1191026 -161408904 + THE1B LTR MaLR 152 364 0 1298 119 12 27 chrX 1191026 1191278 -161408652 - L1PB4 LINE L1 -360 5796 5550 1253 219 32 69 chrX 1191862 1191935 -161407995 + MLT1A1 LTR MaLR 1 75 -290 2028 117 23 94 chrX 1191935 1192328 -161407602 + MLT1A1 LTR MaLR 1 365 0 1253 219 32 69 chrX 1192328 1192633 -161407297 + MLT1A1 LTR MaLR 75 365 0 2121 156 35 20 chrX 1192809 1192998 -161406932 + L1MA7 LINE L1 5889 6074 -217 2363 129 116 13 chrX 1192998 1193386 -161406544 - MSTA LTR MaLR 0 428 1 2121 156 35 20 chrX 1193386 1193593 -161406337 + L1MA7 LINE L1 6074 6291 0 885 147 27 7 chrX 1194067 1194217 -161405713 - L1MA4 LINE L1 -302 5998 5846 758 283 90 28 chrX 1194217 1194652 -161405278 + MER20B DNA MER1_type 292 753 -30 423 0 0 0 chrX 1194985 1195032 -161404898 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1708 179 0 11 chrX 1195035 1195320 -161404610 - AluJo SINE Alu -30 282 1 986 181 68 0 chrX 1195619 1195796 -161404134 - MER5A DNA MER1_type 0 189 1 3686 148 50 2 chrX 1195946 1196521 -161403409 - LTR26 LTR ERV1 0 603 1 693 193 8 0 chrX 1197894 1198013 -161401917 - L1MC1 LINE L1 0 6333 6214 365 153 0 0 chrX 1198020 1198079 -161401851 + L1MC1 LINE L1 5791 5849 -484 485 154 23 17 chrX 1198196 1198371 -161401559 + (TA)n Simple_repeat Simple_repeat 1 176 0 1172 196 117 56 chrX 1198430 1198772 -161401158 + MLT1A1 LTR MaLR 1 363 -2 199 270 95 0 chrX 1199830 1199893 -161400037 + MIR SINE MIR 102 170 -92 23 0 0 0 chrX 1200180 1200203 -161399727 + AT_rich Low_complexity Low_complexity 1 23 0 5362 128 19 8 chrX 1200204 1201038 -161398892 - L1PA15 LINE L1 -2 6163 5321 2151 140 0 6 chrX 1201038 1201352 -161398578 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 1201429 1201457 -161398473 + AT_rich Low_complexity Low_complexity 1 28 0 1717 184 7 3 chrX 1203427 1203732 -161396198 + AluJo SINE Alu 1 306 -6 1459 104 4 0 chrX 1204517 1204538 -161395392 + L1P4 LINE L1 5573 5592 -559 2530 83 0 93 chrX 1204538 1204935 -161394995 - L1PA14 LINE L1 -2 6159 5800 1459 104 4 0 chrX 1204935 1205132 -161394798 + L1PA14 LINE L1 5592 5800 -351 368 180 0 0 chrX 1205825 1205886 -161394044 + MER63 DNA MER1_type 687 747 -89 227 374 0 0 chrX 1205891 1205974 -161393956 + MER63 DNA MER1_type 979 1061 -1 1858 105 201 10 chrX 1206761 1207074 -161392856 + THE1C LTR MaLR 3 375 0 996 133 0 0 chrX 1207170 1207350 -161392580 + (TA)n Simple_repeat Simple_repeat 1 180 0 1712 170 10 14 chrX 1207352 1207640 -161392290 - AluJo SINE Alu -25 287 1 1561 125 38 19 chrX 1207965 1208229 -161391701 + L1MA5A LINE L1 6029 6297 0 337 202 0 21 chrX 1208310 1208404 -161391526 + GA-rich Low_complexity Low_complexity 1 92 0 306 250 15 0 chrX 1208651 1208719 -161391211 + MER5B DNA MER1_type 1 69 -109 317 184 0 13 chrX 1208766 1208842 -161391088 + GA-rich Low_complexity Low_complexity 2 76 0 562 263 39 19 chrX 1208853 1209058 -161390872 + L1ME LINE L1 5439 5647 -474 28 91 0 0 chrX 1209338 1209415 -161390515 + AT_rich Low_complexity Low_complexity 1 77 0 663 209 11 6 chrX 1209700 1209877 -161390053 + CT-rich Low_complexity Low_complexity 3 180 0 343 253 135 70 chrX 1211229 1211458 -161388472 - MLT1J2 LTR MaLR -143 307 64 253 228 33 11 chrX 1212170 1212262 -161387668 + (TA)n Simple_repeat Simple_repeat 2 95 0 564 215 20 108 chrX 1212671 1212866 -161387064 + MER5B DNA MER1_type 1 178 0 460 269 14 28 chrX 1213151 1213292 -161386638 + MIR SINE MIR 68 206 -56 24 0 0 0 chrX 1213892 1213916 -161386014 + AT_rich Low_complexity Low_complexity 1 24 0 408 191 0 0 chrX 1214406 1214495 -161385435 + (ATG)n Simple_repeat Simple_repeat 3 91 0 224 314 98 49 chrX 1214745 1215009 -161384921 - L2 LINE L2 -674 2640 2364 228 355 0 0 chrX 1215211 1215287 -161384643 - MLT1I LTR MaLR -236 173 98 1162 243 80 39 chrX 1216152 1216592 -161383338 - MLT1C LTR MaLR -8 459 2 552 219 73 35 chrX 1216603 1216883 -161383047 - MLT1D LTR MaLR -144 361 14 713 232 81 32 chrX 1216896 1217193 -161382737 - MLT1C LTR MaLR -122 345 24 1162 182 5 5 chrX 1217455 1217664 -161382266 - AluJo SINE Alu -4 308 100 1485 171 25 18 chrX 1217664 1217938 -161381992 + AluJo SINE Alu 24 299 -13 2098 119 36 7 chrX 1218158 1218461 -161381469 - AluSx SINE Alu 0 312 1 2097 145 0 0 chrX 1219264 1219574 -161380356 - AluSx SINE Alu -2 310 1 2417 66 3 7 chrX 1219871 1220174 -161379756 + AluY SINE Alu 1 302 -9 2387 139 58 0 chrX 1221173 1221517 -161378413 + THE1B LTR MaLR 1 364 0 1840 163 0 0 chrX 1222056 1222366 -161377564 - AluJb SINE Alu 0 310 1 1088 124 10 161 chrX 1222771 1222989 -161376941 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1454 204 25 0 chrX 1222989 1223269 -161376661 - AluJo SINE Alu -25 287 1 1088 124 10 161 chrX 1223269 1223341 -161376589 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1957 146 0 17 chrX 1223342 1223644 -161376286 + AluJb SINE Alu 1 297 -15 418 244 0 0 chrX 1223721 1223803 -161376127 - Tigger4(Zombi) DNA MER2_type -2649 82 1 4205 141 19 16 chrX 1223868 1224377 -161375553 + MER41B LTR ERV1 1 514 -121 2362 100 7 0 chrX 1224377 1224687 -161375243 - AluSx SINE Alu 0 312 1 4205 141 19 16 chrX 1224687 1224810 -161375120 + MER41B LTR ERV1 514 635 0 3587 111 61 23 chrX 1225368 1225938 -161373992 - MER4B LTR ERV1 -9 601 10 2496 200 28 48 chrX 1226866 1227431 -161372499 - MLT2B3 LTR ERVL 0 554 1 238 207 0 52 chrX 1227431 1227489 -161372441 + MLT1A1 LTR MaLR 308 362 -3 532 165 0 0 chrX 1227630 1227721 -161372209 + L1PB4 LINE L1 6061 6151 -5 889 223 5 11 chrX 1228114 1228302 -161371628 - MLT1A1 LTR MaLR -17 348 162 515 155 10 0 chrX 1228304 1228407 -161371523 + GA-rich Low_complexity Low_complexity 2 105 0 22 0 0 0 chrX 1228794 1228816 -161371114 + AT_rich Low_complexity Low_complexity 1 22 0 259 77 0 0 chrX 1229828 1229859 -161370071 - MADE1 DNA Mariner 0 80 47 2064 139 0 0 chrX 1229859 1230161 -161369769 + AluSx SINE Alu 1 302 -10 931 211 70 26 chrX 1230163 1230448 -161369482 + MSTD LTR MaLR 48 389 -7 1762 173 0 19 chrX 1230792 1231099 -161368831 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1231325 1231357 -161368573 + (TAA)n Simple_repeat Simple_repeat 2 33 0 43 71 0 0 chrX 1231362 1231447 -161368483 + AT_rich Low_complexity Low_complexity 1 85 0 810 158 0 0 chrX 1231487 1231607 -161368323 + FLAM_C SINE Alu 6 125 -18 4523 97 8 0 chrX 1231904 1232491 -161367439 - L1PA10 LINE L1 -4 6164 5573 257 211 42 28 chrX 1232498 1232569 -161367361 - MLT1E3 LTR MaLR -8 616 545 1776 135 8 15 chrX 1233095 1233412 -161366518 + Tigger2 DNA MER2_type 1 2609 -109 216 202 10 40 chrX 1233483 1233582 -161366348 + (TATAA)n Simple_repeat Simple_repeat 2 97 0 182 123 27 55 chrX 1233624 1233697 -161366233 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 224 288 34 0 chrX 1233721 1233867 -161366063 + (TA)n Simple_repeat Simple_repeat 1 151 0 544 213 9 19 chrX 1233868 1233976 -161365954 + Tigger2 DNA MER2_type 2601 2707 -11 22 80 0 0 chrX 1233976 1234026 -161365904 + AT_rich Low_complexity Low_complexity 1 50 0 444 305 41 15 chrX 1234161 1234358 -161365572 + MLT1H LTR MaLR 87 288 -261 514 249 154 6 chrX 1234385 1234554 -161365376 + MLT1H LTR MaLR 356 549 0 430 260 26 42 chrX 1234621 1234813 -161365117 + HAL1 LINE L1 1486 1674 -833 24 109 0 0 chrX 1235367 1235468 -161364462 + AT_rich Low_complexity Low_complexity 1 101 0 828 173 0 0 chrX 1236401 1236528 -161363402 + FLAM_C SINE Alu 1 127 -16 1919 166 0 0 chrX 1237047 1237342 -161362588 - AluJb SINE Alu -15 297 3 2565 121 20 3 chrX 1237372 1237728 -161362202 + THE1B LTR MaLR 1 362 -2 1781 174 0 0 chrX 1239249 1239530 -161360400 - AluJb SINE Alu -23 289 9 1795 147 0 53 chrX 1240661 1240981 -161358949 - AluJo SINE Alu -9 303 1 1526 172 36 7 chrX 1241417 1241696 -161358234 + MER2 DNA MER2_type 28 314 -31 1274 186 17 0 chrX 1241759 1241995 -161357935 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1243128 1243184 -161356746 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 775 140 22 27 chrX 1243206 1243541 -161356389 + (TCTA)n Simple_repeat Simple_repeat 1 333 0 235 288 0 0 chrX 1243810 1243869 -161356061 + LTR16A LTR ERVL 385 443 -7 1827 160 3 3 chrX 1244355 1244649 -161355281 - AluJo SINE Alu -18 294 1 233 232 18 0 chrX 1244736 1244792 -161355138 - L1ME3A LINE L1 -114 6056 6000 1675 169 3 40 chrX 1245374 1245514 -161354416 - AluJo SINE Alu -20 292 148 2869 105 47 0 chrX 1245514 1245923 -161354007 + MSTA LTR MaLR 1 428 0 1675 169 3 40 chrX 1245923 1246084 -161353846 - AluJo SINE Alu -164 148 2 2302 121 23 69 chrX 1246457 1246894 -161353036 + L1PB4 LINE L1 5605 6021 -135 398 171 0 0 chrX 1247005 1247075 -161352855 + L1PB4 LINE L1 6079 6148 -8 950 63 39 16 chrX 1247079 1247228 -161352702 + L1PA10 LINE L1 6039 6168 0 510 279 63 82 chrX 1247247 1247617 -161352313 - L1ME3A LINE L1 -248 5922 5579 2161 110 7 0 chrX 1247617 1247909 -161352021 + AluSx SINE Alu 1 294 -18 510 279 63 82 chrX 1247909 1248135 -161351795 - L1ME3A LINE L1 -591 5579 5350 509 254 117 64 chrX 1248179 1248572 -161351358 - L1ME3A LINE L1 -867 5279 4866 282 379 11 32 chrX 1248611 1248801 -161351129 + LTR16C LTR ERVL 73 258 -233 1210 213 54 57 chrX 1248861 1249246 -161350684 - MLT1B LTR MaLR 0 467 4 524 124 0 157 chrX 1249654 1249700 -161350230 + Tigger5 DNA MER2_type 2222 2239 -84 1869 166 16 3 chrX 1249700 1250008 -161349922 - AluJo SINE Alu 0 312 1 524 124 0 157 chrX 1250008 1250082 -161349848 + Tigger5 DNA MER2_type 2239 2323 0 1406 137 5 0 chrX 1250721 1250940 -161348990 - MLT1B LTR MaLR -12 378 159 1249 172 5 9 chrX 1250941 1251176 -161348754 - MLT1B LTR MaLR 0 396 158 1397 225 30 48 chrX 1251178 1251576 -161348354 - MLT1B LTR MaLR -1 395 1 574 213 22 7 chrX 1251941 1252489 -161347441 + GA-rich Low_complexity Low_complexity 1 556 0 236 374 0 0 chrX 1252490 1252573 -161347357 + A-rich Low_complexity Low_complexity 4 86 0 274 132 0 0 chrX 1252824 1252862 -161347068 - MER20 DNA MER1_type 0 219 182 409 105 0 0 chrX 1252863 1252920 -161347010 - Alu SINE Alu -16 296 240 2402 145 3 3 chrX 1253007 1253366 -161346564 - THE1B LTR MaLR 0 364 6 4149 153 15 44 chrX 1253366 1253770 -161346160 + LTR62 LTR ERVK 3 378 -341 1629 167 3 44 chrX 1253770 1254087 -161345843 - AluJb SINE Alu -8 304 1 4149 153 15 44 chrX 1254087 1254416 -161345514 + LTR62 LTR ERVK 378 715 -4 2825 178 10 2 chrX 1255115 1255609 -161344321 - L1MB3 LINE L1 0 6183 5686 677 183 11 22 chrX 1255964 1256144 -161343786 + CT-rich Low_complexity Low_complexity 3 180 0 447 166 36 22 chrX 1256160 1256299 -161343631 + CT-rich Low_complexity Low_complexity 1 141 0 414 79 0 16 chrX 1256684 1256747 -161343183 - L1P4 LINE L1 -671 5495 5434 329 209 91 0 chrX 1256944 1257054 -161342876 + L1P LINE L1 5196 5315 -831 564 231 103 15 chrX 1257054 1257257 -161342673 - THE1C LTR MaLR 0 375 155 276 77 0 0 chrX 1457567 1457606 -161142324 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1643 160 11 4 chrX 1457606 1457887 -161142043 - AluSx SINE Alu -28 284 2 198 0 0 0 chrX 1458941 1458963 -161140967 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 2311 104 0 0 chrX 1459007 1459306 -161140624 + AluSx SINE Alu 1 299 -13 404 222 7 0 chrX 1459440 1459584 -161140346 + CT-rich Low_complexity Low_complexity 2 146 0 647 196 0 6 chrX 1459679 1459858 -161140072 + CT-rich Low_complexity Low_complexity 2 179 0 21 36 0 0 chrX 1460155 1460183 -161139747 + AT_rich Low_complexity Low_complexity 1 28 0 2280 106 3 0 chrX 1460700 1461003 -161138927 - AluSx SINE Alu -8 304 1 986 208 38 5 chrX 1461679 1461891 -161138039 - MER20 DNA MER1_type 0 219 1 439 206 6 40 chrX 1461893 1462068 -161137862 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 934 204 37 28 chrX 1462089 1462305 -161137625 - MER20 DNA MER1_type -1 218 1 487 187 6 42 chrX 1462307 1462473 -161137457 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 469 250 0 48 chrX 1462494 1462662 -161137268 - MER20 DNA MER1_type 0 219 60 1343 153 66 94 chrX 1462801 1463088 -161136842 + LTR47A LTR ERVL 174 452 0 200 250 0 13 chrX 1464106 1464182 -161135748 + CT-rich Low_complexity Low_complexity 3 77 0 382 153 81 0 chrX 1464218 1464329 -161135601 + CT-rich Low_complexity Low_complexity 4 123 0 334 180 22 22 chrX 1464340 1464429 -161135501 + CT-rich Low_complexity Low_complexity 2 90 0 274 233 31 8 chrX 1464444 1464573 -161135357 + CT-rich Low_complexity Low_complexity 2 133 0 568 198 31 7 chrX 1464618 1464912 -161135018 + CT-rich Low_complexity Low_complexity 1 301 0 1801 185 91 8 chrX 1465550 1465933 -161133997 - MLT1D LTR MaLR -90 415 1 239 81 54 0 chrX 1465934 1465971 -161133959 - MLT1D LTR MaLR -455 50 12 277 188 42 0 chrX 1465979 1466027 -161133903 - MLT1D LTR MaLR -455 50 1 310 125 42 0 chrX 1466028 1466076 -161133854 - MLT1D LTR MaLR -455 50 1 1236 241 58 89 chrX 1466225 1466486 -161133444 + MER77 LTR ERV1 92 302 -303 2386 158 44 2 chrX 1466486 1466897 -161133033 + MSTA LTR MaLR 1 428 0 1236 241 58 89 chrX 1466897 1467185 -161132745 + MER77 LTR ERV1 302 597 -8 1775 173 6 26 chrX 1467317 1467754 -161132176 + AluJo SINE Alu 6 436 0 1797 174 0 0 chrX 1468195 1468476 -161131454 - AluJb SINE Alu -23 289 9 1814 147 0 53 chrX 1469607 1469927 -161130003 - AluJo SINE Alu -9 303 1 1483 176 36 7 chrX 1470363 1470642 -161129288 + MER2 DNA MER2_type 28 314 -31 1303 187 21 0 chrX 1470705 1470940 -161128990 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1472074 1472130 -161127800 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 786 127 32 22 chrX 1472162 1472489 -161127441 + (TCTA)n Simple_repeat Simple_repeat 1 330 0 235 288 0 0 chrX 1472758 1472817 -161127113 + LTR16A LTR ERVL 385 443 -7 1834 163 3 3 chrX 1473302 1473596 -161126334 - AluJo SINE Alu -18 294 1 234 232 18 0 chrX 1473683 1473739 -161126191 - L1ME3A LINE L1 -114 6056 6000 1060 113 0 14 chrX 1474320 1474462 -161125468 - FRAM SINE Alu -20 156 17 663 112 0 28 chrX 1474462 1474569 -161125361 + MSTA LTR MaLR 3 106 -322 2253 142 58 0 chrX 1475639 1475983 -161123947 + THE1B LTR MaLR 1 364 0 1860 163 0 0 chrX 1476521 1476831 -161123099 - AluJb SINE Alu 0 310 1 1070 124 10 161 chrX 1477236 1477454 -161122476 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1473 204 25 0 chrX 1477454 1477734 -161122196 - AluJo SINE Alu -25 287 1 1070 124 10 161 chrX 1477734 1477806 -161122124 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1995 142 0 17 chrX 1477807 1478109 -161121821 + AluJb SINE Alu 1 297 -15 414 244 0 0 chrX 1478186 1478268 -161121662 - Tigger4(Zombi) DNA MER2_type -2649 82 1 2215 130 32 0 chrX 1478333 1478671 -161121259 + MER41B LTR ERV1 1 349 -286 2048 147 0 6 chrX 1479465 1479779 -161120151 - AluSx SINE Alu 0 312 1 819 197 50 46 chrX 1479947 1480165 -161119765 + MER20 DNA MER1_type 1 219 0 473 161 39 13 chrX 1480199 1480354 -161119576 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 2106 125 33 41 chrX 1480354 1480721 -161119209 - THE1B LTR MaLR 0 364 1 587 39 13 0 chrX 1480723 1480801 -161119129 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 736 207 93 5 chrX 1480805 1480998 -161118932 + MER20 DNA MER1_type 1 210 -9 291 140 0 0 chrX 1482461 1482511 -161117419 + (CATA)n Simple_repeat Simple_repeat 4 53 0 238 264 23 11 chrX 1482628 1482715 -161117215 + L1MC4 LINE L1 6615 6702 -1340 336 224 47 28 chrX 1482857 1482964 -161116966 + MLT1A1 LTR MaLR 256 364 -1 458 261 114 63 chrX 1483253 1483647 -161116283 + L1ME3A LINE L1 4866 5279 -867 492 285 62 79 chrX 1483691 1483917 -161116013 + L1ME3A LINE L1 5350 5578 -592 2198 106 7 0 chrX 1483917 1484209 -161115721 - AluSx SINE Alu -18 294 1 492 285 62 79 chrX 1484209 1484577 -161115353 + L1ME3A LINE L1 5578 5922 -248 904 63 39 16 chrX 1484596 1484745 -161115185 - L1PA10 LINE L1 0 6168 6039 2752 155 23 48 chrX 1484746 1485308 -161114622 - L1PB4 LINE L1 -4 6152 5605 707 224 7 26 chrX 1485684 1485836 -161114094 + AluJo SINE Alu 5 153 -159 1633 108 58 8 chrX 1485842 1486102 -161113828 - MSTA LTR MaLR 0 428 156 870 192 17 17 chrX 1486285 1486457 -161113473 + MSTD LTR MaLR 218 389 -7 1775 173 0 19 chrX 1486801 1487108 -161112822 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1487334 1487366 -161112564 + (TAA)n Simple_repeat Simple_repeat 2 33 0 36 82 0 0 chrX 1487371 1487456 -161112474 + AT_rich Low_complexity Low_complexity 1 85 0 812 158 0 0 chrX 1487496 1487616 -161112314 + FLAM_C SINE Alu 6 125 -18 1713 102 42 25 chrX 1487904 1488188 -161111742 - L1PA10 LINE L1 -1 6167 5879 253 141 58 0 chrX 1488493 1488613 -161111317 + GA-rich Low_complexity Low_complexity 1 127 0 709 114 13 27 chrX 1488634 1488783 -161111147 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 1731 173 12 62 chrX 1489133 1489508 -161110422 + L1MB8 LINE L1 5773 6126 -52 1602 195 30 3 chrX 1489508 1489806 -161110124 + AluJo SINE Alu 1 306 -6 1731 173 12 62 chrX 1489806 1489851 -161110079 + L1MB8 LINE L1 6126 6172 -6 685 242 6 0 chrX 1490844 1491001 -161108929 - L1PB4 LINE L1 -5 6151 5994 1542 161 60 7 chrX 1491135 1491420 -161108510 - MLT1A1 LTR MaLR -2 363 64 234 184 61 0 chrX 1491467 1491516 -161108414 - MLT1B LTR MaLR -3 387 336 776 139 0 17 chrX 1491618 1491791 -161108139 + (A)n Simple_repeat Simple_repeat 1 170 0 1880 146 3 43 chrX 1491815 1492165 -161107765 + MSTC LTR MaLR 93 428 0 22 56 0 0 chrX 1492177 1492213 -161107717 + AT_rich Low_complexity Low_complexity 1 36 0 1504 171 38 17 chrX 1492296 1492457 -161107473 - AluJo SINE Alu -19 293 122 384 22 0 0 chrX 1492457 1492502 -161107428 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1504 171 38 17 chrX 1492502 1492627 -161107303 - AluJo SINE Alu -190 122 1 2128 55 4 0 chrX 1492636 1492919 -161107011 - AluY SINE Alu 0 311 28 914 234 23 18 chrX 1493286 1493504 -161106426 + MER20 DNA MER1_type 1 219 0 1143 40 35 6 chrX 1493520 1493694 -161106236 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1196 173 10 13 chrX 1493886 1494121 -161105809 - MLT1B LTR MaLR 0 396 158 1502 210 24 37 chrX 1494121 1494518 -161105412 - MLT1B LTR MaLR 0 467 1 538 203 31 12 chrX 1494882 1495517 -161104413 + GA-rich Low_complexity Low_complexity 1 647 0 1934 107 70 0 chrX 1495834 1496104 -161103826 + AluSx SINE Alu 3 291 -21 255 103 0 0 chrX 1496664 1496703 -161103227 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1100 166 20 11 chrX 1497166 1497374 -161102556 - MLT2A2 LTR ERVL 0 453 293 1391 121 11 0 chrX 1498697 1498887 -161101043 - AluSq SINE Alu -121 192 1 241 148 49 0 chrX 1500105 1500166 -161099764 + (CATA)n Simple_repeat Simple_repeat 4 67 0 23 0 0 0 chrX 1501663 1501686 -161098244 + AT_rich Low_complexity Low_complexity 1 23 0 1303 176 41 19 chrX 1501859 1502126 -161097804 - AluJo SINE Alu -16 296 24 991 184 0 0 chrX 1502163 1502321 -161097609 + FRAM SINE Alu 1 158 -8 662 231 83 29 chrX 1502597 1502893 -161097037 + MLT1C LTR MaLR 24 345 -122 547 215 83 49 chrX 1502906 1503111 -161096819 + MLT1D LTR MaLR 14 225 -280 440 250 58 32 chrX 1503211 1503367 -161096563 + MLT1A1 LTR MaLR 18 177 -328 2172 100 16 10 chrX 1503526 1503836 -161096094 - AluSx SINE Alu 0 312 1 775 105 8 16 chrX 1503836 1503960 -161095970 + MER41A LTR ERV1 432 554 0 1170 89 18 6 chrX 1504518 1504686 -161095244 - MER4B LTR ERV1 -9 601 432 515 155 10 0 chrX 1505067 1505170 -161094760 + CT-rich Low_complexity Low_complexity 2 105 0 897 223 5 11 chrX 1505172 1505360 -161094570 + MLT1A1 LTR MaLR 162 348 -17 454 174 11 0 chrX 1505750 1505842 -161094088 - L1PB4 LINE L1 -3 6153 6061 1328 234 64 39 chrX 1506437 1506872 -161093058 - MLT1C LTR MaLR 0 467 22 2119 125 36 22 chrX 1508591 1508950 -161090980 + THE1B LTR MaLR 1 364 0 1364 181 55 43 chrX 1508955 1509303 -161090627 + MLT1A2 LTR MaLR 23 374 0 588 237 55 127 chrX 1509307 1509687 -161090243 + MLT1C LTR MaLR 65 412 -55 2496 136 19 0 chrX 1509687 1510040 -161089890 - L1PB1 LINE L1 0 6151 5787 342 0 0 0 chrX 1510040 1510078 -161089852 + (TG)n Simple_repeat Simple_repeat 2 39 0 2496 136 19 0 chrX 1510078 1510137 -161089793 - L1PB1 LINE L1 -364 5787 5731 588 237 55 127 chrX 1510137 1510190 -161089740 + MLT1C LTR MaLR 412 467 0 2798 236 14 3 chrX 1510660 1511282 -161088648 + MER82 DNA MER2_type 24 652 -1 2257 94 0 13 chrX 1511931 1512230 -161087700 - AluSc SINE Alu -14 295 1 2042 130 20 0 chrX 1512230 1512522 -161087408 - AluSx SINE Alu -14 298 1 1974 171 14 8 chrX 1512547 1512910 -161087020 + MLT1A1 LTR MaLR 1 365 0 2566 71 0 0 chrX 1513611 1513919 -161086011 + AluY SINE Alu 1 308 -3 704 141 0 70 chrX 1514226 1514382 -161085548 - L1MB2 LINE L1 -7 6164 6020 2339 88 8 22 chrX 1514408 1514773 -161085157 - L1PB1 LINE L1 -80 6071 5712 759 172 4 146 chrX 1514824 1514996 -161084934 + MER82 DNA MER2_type 212 336 -317 1485 179 0 104 chrX 1514996 1515331 -161084599 - AluJo SINE Alu -2 300 1 759 172 4 146 chrX 1515331 1515419 -161084511 + MER82 DNA MER2_type 336 435 -218 213 213 0 0 chrX 1515426 1515473 -161084457 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 257 15 125 chrX 1515556 1515692 -161084238 - MIR3 SINE MIR -51 157 37 239 293 52 9 chrX 1516285 1516401 -161083529 - L1MB7 LINE L1 -15 6169 6049 256 61 0 0 chrX 1516401 1516434 -161083496 - U2 snRNA snRNA -155 33 1 1613 180 32 50 chrX 1516438 1516839 -161083091 - L1MB5 LINE L1 -114 6060 5667 472 313 166 22 chrX 1517034 1517389 -161082541 + L2 LINE L2 2906 3311 -2 293 138 0 17 chrX 1517843 1517901 -161082029 + (TCC)n Simple_repeat Simple_repeat 1 57 0 724 205 118 46 chrX 1517901 1518096 -161081834 - AluJo SINE Alu -18 294 86 1404 165 5 22 chrX 1518096 1518320 -161081610 - AluJo SINE Alu -92 220 1 207 0 0 0 chrX 1519890 1519913 -161080017 + (TG)n Simple_repeat Simple_repeat 1 23 0 240 59 0 0 chrX 1519915 1519949 -161079981 + (CA)n Simple_repeat Simple_repeat 1 34 0 1898 148 13 10 chrX 1520195 1520500 -161079430 - AluJo SINE Alu -6 306 1 2334 120 3 0 chrX 1520522 1520888 -161079042 - L1PB4 LINE L1 0 6156 5790 1045 122 6 0 chrX 1520890 1521046 -161078884 + THE1B LTR MaLR 5 161 -203 8257 57 15 1 chrX 1521046 1522916 -161077014 - L1PA6 LINE L1 -4 6150 4287 1845 43 30 0 chrX 1522917 1523152 -161076778 + L1PA6 LINE L1 4045 4286 -1860 1045 96 82 58 chrX 1523152 1523360 -161076570 + THE1B LTR MaLR 152 364 0 1196 83 5 21 chrX 1523360 1523553 -161076377 - L1PB4 LINE L1 -360 5796 5607 1110 214 32 70 chrX 1524206 1524269 -161075661 + MLT1A1 LTR MaLR 11 75 -290 1856 125 20 92 chrX 1524269 1524662 -161075268 + MLT1A1 LTR MaLR 1 365 0 1110 214 32 70 chrX 1524662 1524967 -161074963 + MLT1A1 LTR MaLR 75 365 0 1919 156 35 20 chrX 1525143 1525332 -161074598 + L1MA7 LINE L1 5889 6074 -217 2178 129 116 13 chrX 1525332 1525720 -161074210 - MSTA LTR MaLR 0 428 1 1919 156 35 20 chrX 1525720 1525927 -161074003 + L1MA7 LINE L1 6074 6291 0 813 147 27 7 chrX 1526399 1526549 -161073381 - L1MA4 LINE L1 -302 5998 5846 571 285 90 28 chrX 1526549 1526984 -161072946 + MER20B DNA MER1_type 292 753 -30 423 0 0 0 chrX 1527317 1527364 -161072566 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1741 175 0 11 chrX 1527367 1527652 -161072278 - AluJo SINE Alu -30 282 1 908 181 68 0 chrX 1527951 1528128 -161071802 - MER5A DNA MER1_type 0 189 1 3403 146 50 2 chrX 1528278 1528853 -161071077 - LTR26 LTR ERV1 0 603 1 637 193 8 0 chrX 1530226 1530345 -161069585 - L1MC1 LINE L1 0 6333 6214 336 153 0 0 chrX 1530352 1530411 -161069519 + L1MC1 LINE L1 5791 5849 -484 503 153 23 17 chrX 1530528 1530705 -161069225 + (TA)n Simple_repeat Simple_repeat 1 178 0 1026 196 117 56 chrX 1530764 1531106 -161068824 + MLT1A1 LTR MaLR 1 363 -2 201 270 95 0 chrX 1532164 1532227 -161067703 + MIR SINE MIR 102 170 -92 23 0 0 0 chrX 1532514 1532537 -161067393 + AT_rich Low_complexity Low_complexity 1 23 0 4949 129 19 8 chrX 1532538 1533372 -161066558 - L1PA15 LINE L1 -2 6163 5321 2172 140 0 6 chrX 1533372 1533686 -161066244 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 1533763 1533791 -161066139 + AT_rich Low_complexity Low_complexity 1 28 0 1744 184 7 3 chrX 1535761 1536066 -161063864 + AluJo SINE Alu 1 306 -6 2342 83 0 93 chrX 1536872 1537269 -161062661 - L1PA14 LINE L1 -2 6159 5800 1357 91 0 0 chrX 1537269 1537466 -161062464 + L1PA14 LINE L1 5604 5800 -361 340 172 0 0 chrX 1538162 1538220 -161061710 + MER63 DNA MER1_type 688 745 -315 1706 105 201 10 chrX 1539095 1539408 -161060522 + THE1C LTR MaLR 3 375 0 996 133 0 0 chrX 1539504 1539684 -161060246 + (TA)n Simple_repeat Simple_repeat 1 180 0 1732 170 10 14 chrX 1539686 1539974 -161059956 - AluJo SINE Alu -25 287 1 1459 130 40 0 chrX 1540299 1540552 -161059378 + L1MA5A LINE L1 6029 6291 -6 337 202 0 21 chrX 1540643 1540737 -161059193 + GA-rich Low_complexity Low_complexity 1 92 0 305 250 15 0 chrX 1540984 1541052 -161058878 + MER5B DNA MER1_type 1 69 -109 284 197 0 13 chrX 1541099 1541175 -161058755 + GA-rich Low_complexity Low_complexity 2 76 0 484 262 17 17 chrX 1541219 1541391 -161058539 + L1ME LINE L1 5476 5647 -474 28 91 0 0 chrX 1541671 1541748 -161058182 + AT_rich Low_complexity Low_complexity 1 77 0 690 187 12 6 chrX 1542033 1542204 -161057726 + CT-rich Low_complexity Low_complexity 1 172 0 194 340 78 43 chrX 1543036 1543177 -161056753 + MIR SINE MIR 45 190 -72 284 217 14 0 chrX 1543711 1543780 -161056150 - MLT1J LTR MaLR -342 169 100 253 228 33 11 chrX 1544490 1544582 -161055348 + (TA)n Simple_repeat Simple_repeat 2 95 0 494 215 20 108 chrX 1544991 1545186 -161054744 + MER5B DNA MER1_type 1 178 0 464 269 14 28 chrX 1545471 1545612 -161054318 + MIR SINE MIR 68 206 -56 24 0 0 0 chrX 1546212 1546236 -161053694 + AT_rich Low_complexity Low_complexity 1 24 0 408 191 0 0 chrX 1546726 1546815 -161053115 + (ATG)n Simple_repeat Simple_repeat 3 91 0 240 314 98 49 chrX 1547065 1547329 -161052601 - L2 LINE L2 -674 2640 2364 207 0 0 0 chrX 1547721 1547744 -161052186 + (GA)n Simple_repeat Simple_repeat 1 23 0 260 242 99 11 chrX 1549018 1549109 -161050821 - L2 LINE L2 -7 3306 3208 352 309 80 19 chrX 1550518 1550680 -161049250 - MIR SINE MIR -3 259 88 385 253 138 23 chrX 1550920 1551094 -161048836 + MLT1C LTR MaLR 1 194 -311 1007 77 0 0 chrX 1551096 1551226 -161048704 + AluSp/q SINE Alu 176 305 -8 413 174 114 8 chrX 1551253 1551385 -161048545 + MLT1C LTR MaLR 200 345 -122 1238 224 72 34 chrX 1551394 1551840 -161048090 + MLT1C LTR MaLR 5 467 0 1728 167 7 0 chrX 1552119 1552394 -161047536 - AluJo SINE Alu -16 296 20 1137 202 118 43 chrX 1552905 1553320 -161046610 - MLT1C LTR MaLR 0 467 22 662 221 159 22 chrX 1553350 1553626 -161046304 - MLT1D LTR MaLR -144 361 48 24 32 0 0 chrX 1553726 1553757 -161046173 + AT_rich Low_complexity Low_complexity 1 31 0 912 154 15 0 chrX 1553762 1553898 -161046032 - FRAM SINE Alu -30 146 9 1026 201 19 0 chrX 1554378 1554592 -161045338 + MER20 DNA MER1_type 1 218 -1 1218 104 41 2 chrX 1554623 1555093 -161044837 + (TCTA)n Simple_repeat Simple_repeat 1 488 0 428 172 48 0 chrX 1555106 1555251 -161044679 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 313 102 60 54 chrX 1555263 1555429 -161044501 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 933 194 37 23 chrX 1555479 1555695 -161044235 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chrX 1556755 1556776 -161043154 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 1556814 1556836 -161043094 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chrX 1556882 1556914 -161043016 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrX 1556980 1557001 -161042929 + AT_rich Low_complexity Low_complexity 1 21 0 1593 199 3 32 chrX 1560366 1560678 -161039252 - AluJo SINE Alu -8 304 2 2315 105 0 0 chrX 1561065 1561369 -161038561 - AluSx SINE Alu -8 304 1 1012 203 38 5 chrX 1562045 1562257 -161037673 - MER20 DNA MER1_type 0 219 1 439 206 6 40 chrX 1562259 1562434 -161037496 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 959 199 37 28 chrX 1562455 1562671 -161037259 - MER20 DNA MER1_type -1 218 1 487 187 6 42 chrX 1562673 1562839 -161037091 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 723 240 0 44 chrX 1562860 1563089 -161036841 - MER20 DNA MER1_type 0 219 1 858 43 43 7 chrX 1563091 1563231 -161036699 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 923 216 32 28 chrX 1563247 1563465 -161036465 - MER20 DNA MER1_type 0 219 1 2034 34 4 4 chrX 1563886 1564173 -161035757 + AluY SINE Alu 45 331 0 1598 158 37 4 chrX 1564182 1564307 -161035623 + AluJo SINE Alu 1 120 -192 195 42 0 0 chrX 1564307 1564331 -161035599 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1598 158 37 4 chrX 1564331 1564478 -161035452 + AluJo SINE Alu 120 282 -30 23 24 0 24 chrX 1564483 1564501 -161035429 + AT_rich Low_complexity Low_complexity 1 18 -22 2147 99 3 0 chrX 1564501 1564785 -161035145 - AluSx SINE Alu -27 285 1 23 24 0 24 chrX 1564785 1564807 -161035123 + AT_rich Low_complexity Low_complexity 18 40 0 1532 181 68 14 chrX 1565963 1566256 -161033674 - AluJo SINE Alu -3 309 1 4061 152 32 41 chrX 1566266 1567042 -161032888 + L1MA8 LINE L1 5404 6172 -119 1401 126 13 26 chrX 1567426 1567656 -161032274 + L1PA16 LINE L1 5940 6166 0 341 178 29 11 chrX 1573309 1573483 -161026447 + (TA)n Simple_repeat Simple_repeat 2 178 0 346 179 64 6 chrX 1573593 1573749 -161026181 + (TA)n Simple_repeat Simple_repeat 2 166 0 37 0 0 0 chrX 1573753 1573790 -161026140 + AT_rich Low_complexity Low_complexity 1 37 0 663 127 35 0 chrX 1573790 1573963 -161025967 + (TA)n Simple_repeat Simple_repeat 1 179 0 41 0 0 0 chrX 1573963 1574004 -161025926 + AT_rich Low_complexity Low_complexity 1 41 0 200 198 25 8 chrX 1574010 1574131 -161025799 + (TA)n Simple_repeat Simple_repeat 1 123 0 30 27 0 0 chrX 1574173 1574210 -161025720 + AT_rich Low_complexity Low_complexity 1 37 0 448 233 28 6 chrX 1574228 1574404 -161025526 + (TA)n Simple_repeat Simple_repeat 1 180 0 333 355 55 22 chrX 1574455 1574816 -161025114 + L2 LINE L2 2002 2374 -940 207 170 0 0 chrX 1575107 1575154 -161024776 + (CA)n Simple_repeat Simple_repeat 2 48 0 1884 204 77 33 chrX 1575157 1575676 -161024254 + LTR64 LTR ERVK 1 542 -16 273 333 0 0 chrX 1575677 1575761 -161024169 + (CA)n Simple_repeat Simple_repeat 1 84 0 225 289 56 44 chrX 1575862 1575952 -161023978 + MLT1I LTR MaLR 68 158 -251 197 383 39 22 chrX 1576037 1576217 -161023713 - L2 LINE L2 -312 3001 2819 410 181 16 16 chrX 1576558 1576685 -161023245 + GA-rich Low_complexity Low_complexity 1 127 0 936 122 6 11 chrX 1576685 1576865 -161023065 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 1028 145 14 5 chrX 1576867 1577086 -161022844 + GA-rich Low_complexity Low_complexity 1 216 -226 1028 101 17 11 chrX 1577086 1577265 -161022665 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1028 145 14 5 chrX 1577265 1577305 -161022625 + GA-rich Low_complexity Low_complexity 216 442 0 234 91 0 0 chrX 1578589 1578622 -161021308 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1574 172 19 23 chrX 1578707 1579015 -161020915 - AluJb SINE Alu -5 307 1 2541 46 3 0 chrX 1580051 1580353 -161019577 - AluY SINE Alu -8 303 1 2171 147 0 0 chrX 1580830 1581142 -161018788 + AluJb SINE Alu 1 312 0 1826 166 0 0 chrX 1581810 1582087 -161017843 - AluJb SINE Alu -31 281 5 2401 85 0 13 chrX 1582990 1583306 -161016624 - AluSx SINE Alu 0 312 1 1597 209 19 28 chrX 1583638 1583732 -161016198 + L1MB5 LINE L1 5810 5903 -271 3590 124 15 11 chrX 1583732 1584257 -161015673 + MER1A DNA MER1_type 1 527 0 1597 209 19 28 chrX 1584257 1584521 -161015409 + L1MB5 LINE L1 5903 6165 -9 308 306 10 0 chrX 1585147 1585245 -161014685 + MER20 DNA MER1_type 121 219 0 327 167 40 35 chrX 1585260 1585434 -161014496 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 185 351 90 13 chrX 1585434 1585821 -161014109 - L2 LINE L2 -593 2721 2305 389 286 11 0 chrX 1586047 1586138 -161013792 - MER20 DNA MER1_type -127 92 1 788 108 44 23 chrX 1586141 1586574 -161013356 + (TAGA)n Simple_repeat Simple_repeat 1 442 0 725 107 34 28 chrX 1586635 1586812 -161013118 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 185 0 40 0 chrX 1587050 1587075 -161012855 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2396 68 0 7 chrX 1587078 1587373 -161012557 - AluY SINE Alu -16 295 3 446 60 107 13 chrX 1588764 1589069 -161010861 + (TA)n Simple_repeat Simple_repeat 1 333 0 22 0 0 0 chrX 1589073 1589095 -161010835 + AT_rich Low_complexity Low_complexity 1 22 0 482 30 129 5 chrX 1589095 1589472 -161010458 + (TA)n Simple_repeat Simple_repeat 1 423 0 39 22 0 0 chrX 1589476 1589522 -161010408 + AT_rich Low_complexity Low_complexity 1 46 0 2617 101 64 3 chrX 1589797 1590185 -161009745 + L1PA8A LINE L1 5720 6131 0 304 22 22 22 chrX 1591957 1592003 -161007927 + (GA)n Simple_repeat Simple_repeat 2 47 0 24 0 0 0 chrX 1592021 1592045 -161007885 + AT_rich Low_complexity Low_complexity 1 24 0 2354 74 7 3 chrX 1592641 1592766 -161007164 + AluSp SINE Alu 1 124 -189 189 0 0 0 chrX 1592766 1592787 -161007143 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2354 74 7 3 chrX 1592787 1592960 -161006970 + AluSp SINE Alu 124 300 -13 224 316 0 0 chrX 1593802 1593859 -161006071 + G-rich Low_complexity Low_complexity 3 59 0 276 77 0 0 chrX 1595627 1595666 -161004264 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1664 163 7 3 chrX 1595666 1595948 -161003982 - AluSx SINE Alu -28 284 2 198 0 0 0 chrX 1597002 1597024 -161002906 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1831 157 0 20 chrX 1597068 1597368 -161002562 + AluJb SINE Alu 1 294 -18 749 216 22 11 chrX 1597655 1597840 -161002090 + L1MB5 LINE L1 5980 6166 -8 315 0 0 0 chrX 1598479 1598514 -161001416 + (TA)n Simple_repeat Simple_repeat 2 36 0 2000 142 0 0 chrX 1600137 1600419 -160999511 - AluSx SINE Alu -30 282 1 1026 191 32 18 chrX 1600519 1600739 -160999191 + L1MC1 LINE L1 6111 6333 0 3212 134 43 19 chrX 1600990 1601505 -160998425 - MER1A DNA MER1_type 0 527 1 1289 221 62 9 chrX 1602183 1602523 -160997407 - MLT1C LTR MaLR 0 467 110 1760 214 43 53 chrX 1602532 1603018 -160996912 + MLT1D LTR MaLR 25 505 0 228 187 0 28 chrX 1603296 1603403 -160996527 + (TTA)n Simple_repeat Simple_repeat 3 106 0 2232 99 0 17 chrX 1603960 1604252 -160995678 - AluSg SINE Alu -23 287 1 1837 184 16 72 chrX 1604336 1604411 -160995519 - L1MB5 LINE L1 -9 6165 6087 3546 140 0 19 chrX 1604411 1604948 -160994982 - MER1A DNA MER1_type 0 527 1 1837 184 16 72 chrX 1604948 1605317 -160994613 - L1MB5 LINE L1 -87 6087 5746 2334 100 0 3 chrX 1605347 1605646 -160994284 - AluSx SINE Alu -14 298 1 223 216 54 0 chrX 1605908 1605982 -160993948 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 3671 125 4 9 chrX 1606034 1606563 -160993367 + MER1A DNA MER1_type 2 527 0 191 155 42 14 chrX 1606564 1606635 -160993295 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 241 236 9 109 chrX 1607268 1607306 -160992624 - MLT1J LTR MaLR -183 328 288 2102 130 10 0 chrX 1607306 1607607 -160992323 + AluSx SINE Alu 1 304 -8 241 236 9 109 chrX 1607607 1607678 -160992252 - MLT1J LTR MaLR -223 288 230 882 234 84 96 chrX 1607814 1608314 -160991616 - MLT1D LTR MaLR -11 494 1 4750 118 34 71 chrX 1608374 1609187 -160990743 - LTR1 LTR ERV1 0 785 3 1893 108 82 0 chrX 1609332 1609601 -160990329 - AluSx SINE Alu -21 291 1 4167 151 39 3 chrX 1609720 1609974 -160989956 + L1PB4 LINE L1 5434 5677 -479 2177 111 0 0 chrX 1609974 1610271 -160989659 + AluSx SINE Alu 1 297 -15 4167 151 39 3 chrX 1610271 1610707 -160989223 + L1PB4 LINE L1 5677 6149 -7 247 336 17 8 chrX 1610979 1611098 -160988832 + MER117 DNA MER1_type 44 163 -34 2584 105 11 3 chrX 1611174 1611526 -160988404 - THE1A LTR MaLR 0 355 1 1975 148 0 0 chrX 1611758 1612069 -160987861 - AluJo SINE Alu 0 311 1 26 50 0 0 chrX 1612205 1612245 -160987685 + AT_rich Low_complexity Low_complexity 1 40 0 233 188 68 23 chrX 1612252 1612385 -160987545 + (TA)n Simple_repeat Simple_repeat 2 140 0 * 308 240 29 29 chrX 1612353 1612392 -160987538 + (TTATA)n Simple_repeat Simple_repeat 1 39 -459 1916 109 64 0 chrX 1612392 1612658 -160987272 + AluSg SINE Alu 8 290 -20 308 240 29 29 chrX 1612658 1612851 -160987079 + (TTATA)n Simple_repeat Simple_repeat 38 498 0 23 33 0 0 chrX 1612864 1612894 -160987036 + AT_rich Low_complexity Low_complexity 1 30 0 333 261 9 9 chrX 1613305 1613416 -160986514 - LTR16C LTR ERVL -10 481 371 636 178 7 105 chrX 1613875 1614027 -160985903 - MLT1C LTR MaLR -2 503 367 379 162 15 0 chrX 1614027 1614095 -160985835 + L1PA16 LINE L1 6086 6154 -12 535 305 24 6 chrX 1614307 1614471 -160985459 - MLT1C LTR MaLR -148 478 312 1923 117 0 55 chrX 1616416 1616725 -160983205 - AluSx SINE Alu -20 292 1 274 229 0 0 chrX 1616753 1616814 -160983116 - MLT1E2 LTR MaLR -25 601 541 1334 133 0 0 chrX 1616829 1617024 -160982906 - L1MA2 LINE L1 -2 6302 6108 920 250 41 35 chrX 1617033 1617349 -160982581 - MLT1C LTR MaLR -149 318 1 764 236 94 34 chrX 1617356 1617623 -160982307 - MLT1C LTR MaLR -119 348 66 1809 141 7 11 chrX 1618093 1618412 -160981518 + AluJb SINE Alu 1 318 0 254 322 110 44 chrX 1619136 1619363 -160980567 - L3 LINE CR1 -81 1496 1255 1905 180 17 6 chrX 1619454 1619815 -160980115 + MLT1A1 LTR MaLR 1 365 0 704 222 20 7 chrX 1619885 1620038 -160979892 + MLT1A1 LTR MaLR 211 365 0 1048 270 118 3 chrX 1620303 1620625 -160979305 + MLT1D LTR MaLR 135 493 -12 286 273 268 17 chrX 1620676 1620907 -160979023 + L2 LINE L2 2926 3214 -99 198 0 0 0 chrX 1620934 1620956 -160978974 + (TTAGGG)n Simple_repeat Simple_repeat 2 23 0 2667 85 48 20 chrX 1621190 1621544 -160978386 - THE1B LTR MaLR 0 364 1 300 318 30 15 chrX 1621607 1621739 -160978191 - MER5B DNA MER1_type -18 160 27 226 337 20 20 chrX 1622669 1622770 -160977160 + MER5B DNA MER1_type 55 155 -23 320 88 18 0 chrX 1623057 1623114 -160976816 + (CCCTAA)n Simple_repeat Simple_repeat 2 59 0 212 288 134 40 chrX 1623231 1623417 -160976513 - L2 LINE L2 -217 3096 2879 214 244 0 0 chrX 1623689 1623730 -160976200 + polypyrimidine Low_complexity Low_complexity 2 42 0 1029 208 5 15 chrX 1623809 1624011 -160975919 - MLT1D LTR MaLR 0 505 306 3414 128 78 15 chrX 1624014 1624601 -160975329 + MER4B LTR ERV1 1 606 -4 595 263 53 70 chrX 1624608 1624893 -160975037 - MLT1D LTR MaLR -202 303 24 2174 114 0 3 chrX 1625017 1625314 -160974616 + AluSx SINE Alu 1 296 -16 26 0 0 0 chrX 1625322 1625348 -160974582 + AT_rich Low_complexity Low_complexity 1 26 0 915 183 0 0 chrX 1625397 1625577 -160974353 + (TG)n Simple_repeat Simple_repeat 1 180 0 737 212 6 0 chrX 1625588 1625767 -160974163 + (TG)n Simple_repeat Simple_repeat 1 180 0 1371 214 66 84 chrX 1626760 1627314 -160972616 - MLT1F1 LTR MaLR -7 560 14 1063 187 24 3 chrX 1627371 1627636 -160972294 + L1P5 LINE L1 5196 5470 -686 296 139 0 0 chrX 1627636 1627679 -160972251 - Alu SINE Alu -11 289 247 1731 194 7 0 chrX 1628170 1628469 -160971461 + AluJo SINE Alu 1 301 -11 1880 118 19 166 chrX 1628881 1629062 -160970868 + Tigger2 DNA MER2_type 2 208 -2510 2436 77 0 7 chrX 1629062 1629361 -160970569 + AluY SINE Alu 1 297 -14 1880 118 19 166 chrX 1629361 1629481 -160970449 + Tigger2 DNA MER2_type 208 344 -2374 2122 124 20 0 chrX 1629481 1629779 -160970151 + AluSx SINE Alu 1 304 -8 1880 118 19 166 chrX 1629779 1629906 -160970024 + Tigger2 DNA MER2_type 344 488 -2230 1813 165 3 7 chrX 1629906 1630203 -160969727 - AluSx SINE Alu -16 296 1 1880 118 19 166 chrX 1630203 1630278 -160969652 + Tigger2 DNA MER2_type 488 2718 0 188 250 10 0 chrX 1630278 1630374 -160969556 + (TA)n Simple_repeat Simple_repeat 2 98 0 535 222 6 6 chrX 1630393 1630573 -160969357 + (TA)n Simple_repeat Simple_repeat 1 180 0 272 263 25 0 chrX 1630573 1630653 -160969277 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 1810 210 2 20 chrX 1630658 1631033 -160968897 - MLT2D LTR ERVL -43 477 7 3717 189 81 11 chrX 1631322 1632054 -160967876 + LTR39 LTR ERV1 1 783 0 257 216 0 27 chrX 1632545 1632619 -160967311 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 219 146 0 0 chrX 1632818 1632859 -160967071 + (CATA)n Simple_repeat Simple_repeat 3 43 0 218 141 65 11 chrX 1632898 1632990 -160966940 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 568 162 50 7 chrX 1633029 1633761 -160966169 + (TAGA)n Simple_repeat Simple_repeat 1 763 0 243 141 47 0 chrX 1633949 1634013 -160965917 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2001 133 7 17 chrX 1634606 1634907 -160965023 - AluSx SINE Alu -14 298 1 518 227 60 38 chrX 1634957 1635142 -160964788 - MER53 DNA DNA 0 189 1 915 192 2 0 chrX 1635224 1635685 -160964245 + (TG)n Simple_repeat Simple_repeat 1 462 0 476 165 49 13 chrX 1635709 1636100 -160963830 + (TCTA)n Simple_repeat Simple_repeat 1 405 0 198 103 0 0 chrX 1636139 1636168 -160963762 + (TATG)n Simple_repeat Simple_repeat 3 31 0 448 211 21 11 chrX 1637773 1637868 -160962062 - MER5A DNA MER1_type -80 109 14 378 78 0 0 chrX 1638270 1638321 -160961609 + Alu SINE Alu 1 51 -250 3356 129 20 2 chrX 1638322 1638817 -160961113 + MER1A DNA MER1_type 26 529 0 1903 151 20 0 chrX 1638960 1639252 -160960678 - AluJb SINE Alu -14 298 1 2433 92 3 0 chrX 1639536 1639842 -160960088 + AluSp SINE Alu 6 312 -1 3027 115 18 29 chrX 1640484 1640935 -160958995 + L1PA16 LINE L1 5712 6157 -9 203 317 49 12 chrX 1641134 1641216 -160958714 + MIR SINE MIR 7 91 -171 258 56 0 0 chrX 1642041 1642077 -160957853 + (TG)n Simple_repeat Simple_repeat 2 37 0 2755 132 2 76 chrX 1642332 1642377 -160957553 + MSTC LTR MaLR 1 48 -380 1692 164 7 18 chrX 1642377 1642658 -160957272 + AluJo SINE Alu 5 282 -30 2755 132 2 76 chrX 1642658 1642678 -160957252 + MSTC LTR MaLR 48 68 -360 183 42 0 0 chrX 1642678 1642702 -160957228 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2755 132 2 76 chrX 1642702 1643097 -160956833 + MSTC LTR MaLR 68 428 0 22 56 0 0 chrX 1643109 1643145 -160956785 + AT_rich Low_complexity Low_complexity 1 36 0 1564 170 0 53 chrX 1643228 1643528 -160956402 - AluJo SINE Alu -19 293 10 2675 115 66 17 chrX 1644050 1644458 -160955472 - MSTA LTR MaLR 0 428 1 4105 142 3 14 chrX 1644692 1645331 -160954599 - L1PB4 LINE L1 -2 6154 5523 2474 137 3 7 chrX 1645536 1645928 -160954002 + MLT1B LTR MaLR 1 467 0 1385 164 4 0 chrX 1645929 1646160 -160953770 + MLT1B LTR MaLR 159 390 0 2687 69 33 3 chrX 1646502 1646864 -160953066 + MER41A LTR ERV1 1 373 -181 988 109 0 0 chrX 1646855 1646993 -160952937 + MER41B LTR ERV1 498 635 0 * 1963 107 0 18 chrX 1648076 1648357 -160951573 + MER4E LTR ERV1 1 276 -503 2521 85 3 23 chrX 1648363 1648715 -160951215 + MER4E LTR ERV1 435 779 0 1316 98 0 6 chrX 1648900 1649073 -160950857 - LTR8 LTR ERV1 0 691 520 593 197 88 0 chrX 1649079 1649216 -160950714 - L1MA10 LINE L1 -7 6327 6179 642 121 0 0 chrX 1649222 1649305 -160950625 - AluSg/x SINE Alu -14 296 214 2330 180 21 87 chrX 1649306 1649879 -160950051 - LTR8 LTR ERV1 -156 535 1 431 301 59 34 chrX 1649989 1650225 -160949705 + L2 LINE L2 2113 2354 -960 2184 195 47 0 chrX 1650226 1650631 -160949299 + MSTB1 LTR MaLR 9 432 0 303 28 0 0 chrX 1650876 1650912 -160949018 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2100 72 0 15 chrX 1650923 1651187 -160948743 - AluSq SINE Alu -36 277 18 293 312 32 19 chrX 1651449 1651606 -160948324 + L2 LINE L2 3113 3271 -42 27 0 0 0 chrX 1653936 1653963 -160945967 + AT_rich Low_complexity Low_complexity 1 27 0 241 202 11 45 chrX 1654050 1654139 -160945791 - L1MC4 LINE L1 -1342 6700 6615 2246 155 31 0 chrX 1654173 1654527 -160945403 + MLT1A1 LTR MaLR 1 365 0 283 192 0 0 chrX 1655694 1655746 -160944184 - MLT1B LTR MaLR 0 390 339 24 0 0 0 chrX 1855859 1855883 -160744047 + AT_rich Low_complexity Low_complexity 1 24 0 659 114 20 7 chrX 1856123 1856272 -160743658 + (TG)n Simple_repeat Simple_repeat 2 152 0 592 250 111 34 chrX 1856579 1856787 -160743143 - MER58A DNA MER1_type 0 224 1 1700 175 6 16 chrX 1856862 1857176 -160742754 - AluJo SINE Alu -1 311 1 2161 95 11 0 chrX 1857765 1858049 -160741881 - AluSx SINE Alu -17 295 9 2916 157 15 26 chrX 1858058 1858429 -160741501 - L1PB4 LINE L1 -117 6039 5674 1885 128 3 34 chrX 1858429 1858725 -160741205 - AluSx SINE Alu -23 289 3 2916 157 15 26 chrX 1858725 1858900 -160741030 - L1PB4 LINE L1 -482 5674 5499 1597 181 0 11 chrX 1859107 1859389 -160740541 - AluJo SINE Alu -10 302 24 24 53 0 0 chrX 1859425 1859463 -160740467 + AT_rich Low_complexity Low_complexity 1 38 0 680 326 107 32 chrX 1859504 1860180 -160739750 + L2 LINE L2 2584 3309 -4 21 36 0 0 chrX 1860187 1860215 -160739715 + AT_rich Low_complexity Low_complexity 1 28 0 1380 239 48 58 chrX 1860365 1860498 -160739432 + MLT1D LTR MaLR 27 160 -345 185 65 32 0 chrX 1860498 1860529 -160739401 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2012 137 0 0 chrX 1860529 1860807 -160739123 - AluSx SINE Alu -32 280 3 1380 239 48 58 chrX 1860807 1860901 -160739029 + MLT1D LTR MaLR 159 252 -253 2628 98 5 11 chrX 1860901 1861278 -160738652 - THE1C LTR MaLR 0 375 1 1380 239 48 58 chrX 1861278 1861530 -160738400 + MLT1D LTR MaLR 252 503 -2 1834 178 3 7 chrX 1861534 1861832 -160738098 - AluJo SINE Alu -15 297 1 2157 129 0 0 chrX 1862396 1862698 -160737232 - AluSx SINE Alu -10 302 1 2019 207 130 2 chrX 1862785 1863230 -160736700 - MLT2B1 LTR ERVL -15 505 4 1018 238 5 0 chrX 1863457 1863667 -160736263 - MER20 DNA MER1_type -1 218 8 287 314 10 10 chrX 1863976 1864078 -160735852 + GA-rich Low_complexity Low_complexity 2 103 0 231 59 39 20 chrX 1864213 1864264 -160735666 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2215 115 0 3 chrX 1864897 1865202 -160734728 - AluSx SINE Alu -8 304 1 1093 229 30 30 chrX 1866152 1866454 -160733476 + MLT2C1 LTR ERVL 5 306 -91 790 157 19 12 chrX 1866491 1866751 -160733179 + (TAGA)n Simple_repeat Simple_repeat 1 261 0 305 96 0 39 chrX 1866777 1866829 -160733101 + MLT2C1 LTR ERVL 465 514 -6 245 151 19 0 chrX 1868046 1868099 -160731831 + (TA)n Simple_repeat Simple_repeat 1 54 0 23 33 0 0 chrX 1868185 1868215 -160731715 + AT_rich Low_complexity Low_complexity 1 30 0 2010 129 7 13 chrX 1868696 1868999 -160730931 + AluSx SINE Alu 2 302 -10 369 287 100 31 chrX 1869251 1869610 -160730320 + LTR16A LTR ERVL 51 438 -12 639 165 0 0 chrX 1869700 1869809 -160730121 - FRAM SINE Alu -5 171 63 2084 174 7 68 chrX 1869810 1870252 -160729678 + LTR9 LTR ERV1 1 415 -197 1426 149 0 28 chrX 1870358 1870613 -160729317 - L1MB3 LINE L1 -224 5959 5712 828 188 35 15 chrX 1870610 1870807 -160729123 + L1 LINE L1 4952 5152 -994 * 2095 141 7 0 chrX 1871492 1871796 -160728134 - AluSx SINE Alu -6 306 1 1291 176 231 50 chrX 1871847 1872412 -160727518 - LTR48 LTR ERV1 0 644 33 2026 137 0 7 chrX 1872412 1872704 -160727226 - AluSx SINE Alu -22 290 1 1291 176 231 50 chrX 1872704 1872745 -160727185 - LTR48 LTR ERV1 -611 33 1 26 30 0 0 chrX 1873300 1873333 -160726597 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chrX 1873761 1873791 -160726139 + AT_rich Low_complexity Low_complexity 1 30 0 1880 130 89 11 chrX 1874008 1874355 -160725575 + THE1C LTR MaLR 2 375 0 833 119 0 0 chrX 1874467 1874593 -160725337 + L1MA2 LINE L1 6173 6298 -6 22 0 0 0 chrX 1875372 1875394 -160724536 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 1875550 1875577 -160724353 + AT_rich Low_complexity Low_complexity 1 27 0 1188 259 62 109 chrX 1875904 1876635 -160723295 - L1ME1 LINE L1 -90 6076 5381 478 79 13 71 chrX 1876651 1876894 -160723036 + (TA)n Simple_repeat Simple_repeat 1 228 0 1236 217 14 7 chrX 1876903 1877179 -160722751 - AluSx SINE Alu -34 278 1 588 206 9 75 chrX 1877180 1877408 -160722522 - L1ME1 LINE L1 -748 5398 5186 1779 162 0 11 chrX 1877512 1877820 -160722110 + AluSx SINE Alu 1 305 0 395 285 20 0 chrX 1878874 1879025 -160720905 + (TA)n Simple_repeat Simple_repeat 1 154 0 345 160 28 0 chrX 1879090 1879196 -160720734 + (TA)n Simple_repeat Simple_repeat 1 109 0 446 228 7 14 chrX 1879239 1879539 -160720391 + (TA)n Simple_repeat Simple_repeat 1 297 0 512 212 15 11 chrX 1879553 1879819 -160720111 + (TA)n Simple_repeat Simple_repeat 1 267 0 22 0 0 0 chrX 1880816 1880838 -160719092 + AT_rich Low_complexity Low_complexity 1 22 0 2751 163 19 67 chrX 1880838 1881295 -160718635 - L1MA8 LINE L1 -4 6287 5868 2093 122 23 0 chrX 1881295 1881598 -160718332 - AluSx SINE Alu -2 310 1 2751 163 19 67 chrX 1881598 1881780 -160718150 - L1MA8 LINE L1 -423 5868 5679 260 98 49 0 chrX 1882552 1882593 -160717337 - MER116 DNA Mariner -2 78 36 635 104 104 75 chrX 1883234 1883325 -160716605 - L1MA7 LINE L1 -4 6287 6200 1728 159 52 0 chrX 1883325 1883445 -160716485 + AluSx SINE Alu 1 113 -218 366 23 0 0 chrX 1883445 1883488 -160716442 + (CA)n Simple_repeat Simple_repeat 2 44 0 1728 159 52 0 chrX 1883488 1883684 -160716246 + AluSx SINE Alu 113 331 0 635 104 104 75 chrX 1883684 1883764 -160716166 - L1MA7 LINE L1 -91 6200 6110 511 113 0 0 chrX 1883934 1884014 -160715916 + MADE1 DNA Mariner 1 80 0 1089 197 0 0 chrX 1884621 1884819 -160715111 - AluJb SINE Alu -25 287 90 2218 93 7 0 chrX 1884872 1885162 -160714768 + AluSx SINE Alu 1 292 -20 491 174 0 1 chrX 1885213 1885307 -160714623 + L1MA6 LINE L1 6023 6115 -185 2584 146 19 60 chrX 1885506 1885546 -160714384 - L1MA9 LINE L1 -22 6290 6250 1695 86 0 13 chrX 1885546 1885779 -160714151 + MER30 DNA MER1_type 1 230 0 2584 146 19 60 chrX 1885779 1886259 -160713671 - L1MA9 LINE L1 -62 6250 5791 1032 103 0 0 chrX 1886476 1886621 -160713309 + L1MC1 LINE L1 6034 6178 -155 374 21 21 0 chrX 1886623 1886670 -160713260 + L1MC1 LINE L1 6275 6322 -11 1865 137 0 46 chrX 1886673 1886979 -160712951 + AluJo SINE Alu 3 294 -18 32 57 0 0 chrX 1886985 1887038 -160712892 + AT_rich Low_complexity Low_complexity 1 53 0 1458 187 14 18 chrX 1888166 1888502 -160711428 + AluJo SINE Alu 1 335 0 236 309 10 21 chrX 1888518 1888615 -160711315 + L1MC4 LINE L1 7924 8019 -23 438 313 117 20 chrX 1888695 1889047 -160710883 + L1ME3A LINE L1 5505 5890 -280 328 348 22 47 chrX 1889137 1889459 -160710471 - ERVL LTR ERVL -3967 1797 1484 917 202 6 14 chrX 1889496 1889711 -160710219 + L1MA8 LINE L1 5741 5949 -231 441 298 28 23 chrX 1890470 1890685 -160709245 + L1ME3A LINE L1 5691 5906 -264 240 86 0 0 chrX 1890903 1890938 -160708992 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 346 73 94 10 chrX 1890938 1891034 -160708896 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 6910 59 0 0 chrX 1891307 1892799 -160707131 - L1PA6 LINE L1 0 6154 4650 1095 161 44 5 chrX 1894264 1894467 -160705463 - MLT1B LTR MaLR 0 390 180 1897 193 11 8 chrX 1894467 1894854 -160705076 - MLT1B LTR MaLR -3 393 1 2554 154 43 4 chrX 1894938 1895404 -160704526 - MER31A LTR ERV1 0 485 2 31 58 0 0 chrX 1896298 1896350 -160703580 + AT_rich Low_complexity Low_complexity 1 52 0 869 191 13 93 chrX 1896911 1897147 -160702783 + MER20 DNA MER1_type 2 218 -1 312 253 13 0 chrX 1897181 1897260 -160702670 - L1ME2 LINE L1 -9 6155 6076 1642 212 0 0 chrX 1897260 1897566 -160702364 + AluJo SINE Alu 2 307 0 257 324 15 0 chrX 1897567 1897635 -160702295 + HERV16 LTR ERVL 1753 1821 -3175 323 268 9 71 chrX 1897697 1897809 -160702121 + AluJo SINE Alu 58 162 -140 516 95 0 0 chrX 1897978 1898062 -160701868 + (TA)n Simple_repeat Simple_repeat 2 85 0 1645 202 22 0 chrX 1898147 1898459 -160701471 + LTR57 LTR ERVL 91 409 -2 339 324 61 0 chrX 1898467 1898615 -160701315 + HERV16 LTR ERVL 1237 1393 -3603 4475 194 30 17 chrX 1898619 1900310 -160699620 + L1MA9 LINE L1 4525 6233 -79 2392 131 3 3 chrX 1900310 1900662 -160699268 + THE1B LTR MaLR 1 352 -12 232 299 0 0 chrX 1900688 1900775 -160699155 + L1MC4 LINE L1 6614 6700 -1342 4396 141 15 14 chrX 1901271 1901987 -160697943 + LTR62 LTR ERVK 1 717 -2 271 190 63 0 chrX 1902204 1902283 -160697647 + L1M4 LINE L1 2329 2412 -3734 1109 205 26 26 chrX 1903354 1903583 -160696347 + Tigger5 DNA MER2_type 2 230 -2093 1130 185 35 9 chrX 1903587 1903814 -160696116 + Tigger5 DNA MER2_type 2091 2323 0 236 91 23 0 chrX 1903878 1903922 -160696008 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 96 0 0 chrX 1903991 1904064 -160695866 + AT_rich Low_complexity Low_complexity 1 73 0 1789 178 77 30 chrX 1904160 1904564 -160695366 + L1MA4 LINE L1 5878 6300 0 46 33 0 0 chrX 1904648 1904708 -160695222 + AT_rich Low_complexity Low_complexity 1 60 0 394 200 32 42 chrX 1905085 1905180 -160694750 + MIR SINE MIR 28 121 -141 2063 139 3 3 chrX 1905290 1905600 -160694330 - AluSx SINE Alu -2 310 1 217 318 85 23 chrX 1906301 1906430 -160693500 - MIR SINE MIR -67 195 59 3059 152 9 28 chrX 1907023 1907589 -160692341 - MER4B LTR ERV1 -55 555 1 197 374 22 11 chrX 1907649 1907740 -160692190 - MIR SINE MIR -150 112 21 3555 49 0 7 chrX 1907838 1908289 -160691641 + LTR7 LTR ERV1 1 448 -2 18853 91 30 7 chrX 1908291 1911209 -160688721 + HERVH LTR ERV1 1 2987 -4726 824 142 20 0 chrX 1911203 1911351 -160688579 + HERVH LTR ERV1 3140 3290 -4423 * 2357 134 7 14 chrX 1911341 1911775 -160688155 + HERVH LTR ERV1 3492 3922 -3791 3264 150 17 2 chrX 1912004 1912523 -160687407 - MER1A DNA MER1_type 0 527 1 2727 179 33 0 chrX 1913419 1913966 -160685964 + L1MB7 LINE L1 5617 6181 -3 21 57 0 0 chrX 1914012 1914047 -160685883 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chrX 1916034 1916064 -160683866 + AT_rich Low_complexity Low_complexity 1 30 0 4319 131 16 12 chrX 1916064 1916834 -160683096 - L1PB3 LINE L1 -1 6153 5381 31 0 0 0 chrX 1916918 1916949 -160682981 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chrX 1917511 1917540 -160682390 + AT_rich Low_complexity Low_complexity 1 29 0 911 43 0 0 chrX 1917884 1918001 -160681929 + L1PA4 LINE L1 6039 6155 0 1964 129 7 7 chrX 1919171 1919473 -160680457 + AluJb SINE Alu 1 302 -10 310 222 46 137 chrX 1921371 1921524 -160678406 + MER5B DNA MER1_type 2 140 -38 23 78 0 0 chrX 1922023 1922074 -160677856 + GC_rich Low_complexity Low_complexity 1 51 0 192 89 44 22 chrX 1922170 1922215 -160677715 + GA-rich Low_complexity Low_complexity 2 47 0 2034 165 33 31 chrX 1922321 1922869 -160677061 - MLT2A2 LTR ERVL -1 553 1 186 304 47 108 chrX 1922976 1923190 -160676740 + L2 LINE L2 2214 2414 -900 1477 192 35 3 chrX 1923200 1923539 -160676391 - L1MA9 LINE L1 -170 6142 5793 905 182 0 87 chrX 1923558 1923789 -160676141 + MER2 DNA MER2_type 1 211 -134 37 39 0 0 chrX 1923794 1923845 -160676085 + AT_rich Low_complexity Low_complexity 1 51 0 1001 179 0 0 chrX 1923895 1924079 -160675851 - L1MA9 LINE L1 -498 5793 5610 724 201 34 0 chrX 1924079 1924098 -160675832 + L1MA9 LINE L1 6128 6145 -167 186 43 0 0 chrX 1924098 1924121 -160675809 + (CA)n Simple_repeat Simple_repeat 2 24 0 724 201 34 0 chrX 1924121 1924277 -160675653 + L1MA9 LINE L1 6145 6312 0 333 314 47 35 chrX 1924470 1924642 -160675288 + L2 LINE L2 2619 2792 -522 1992 116 18 3 chrX 1924781 1925066 -160674864 + AluSp SINE Alu 17 305 -8 21 0 0 0 chrX 1925651 1925672 -160674258 + AT_rich Low_complexity Low_complexity 1 21 0 2160 130 3 0 chrX 1925842 1926142 -160673788 + AluSx SINE Alu 1 301 -11 2125 115 0 3 chrX 1926146 1926434 -160673496 + AluSx SINE Alu 1 287 -25 27 62 0 0 chrX 1927384 1927432 -160672498 + AT_rich Low_complexity Low_complexity 1 48 0 25 51 0 0 chrX 1927891 1927930 -160672000 + AT_rich Low_complexity Low_complexity 1 39 0 390 176 0 0 chrX 1927981 1928049 -160671881 - L1M2 LINE L1 -614 5677 5610 2062 133 3 0 chrX 1928234 1928536 -160671394 + AluY SINE Alu 1 303 -8 429 282 46 24 chrX 1929228 1929459 -160670471 - L1MC4 LINE L1 -947 6946 6623 22 35 0 0 chrX 1929524 1929553 -160670377 + AT_rich Low_complexity Low_complexity 1 29 0 266 202 83 0 chrX 1929556 1929640 -160670290 - L1MA9 LINE L1 -24 6288 6198 1995 146 3 0 chrX 1930376 1930664 -160669266 + AluSx SINE Alu 1 289 -23 1700 212 68 27 chrX 1930665 1931103 -160668827 - MLT2B1 LTR ERVL -64 456 1 234 284 83 46 chrX 1932136 1932318 -160667612 - MIR SINE MIR -60 202 16 23 0 0 0 chrX 1932553 1932576 -160667354 + AT_rich Low_complexity Low_complexity 1 23 0 223 150 50 12 chrX 1932603 1932683 -160667247 + GA-rich Low_complexity Low_complexity 1 83 0 2506 125 9 35 chrX 1933640 1934072 -160665858 + MER4B LTR ERV1 1 421 -189 3503 49 2 7 chrX 1934072 1934521 -160665409 - LTR7 LTR ERV1 -3 447 1 1495 57 40 20 chrX 1934521 1934768 -160665162 - HERVH LTR ERV1 0 7713 7462 2276 101 13 7 chrX 1935555 1935863 -160664067 - AluSx SINE Alu -2 310 1 664 158 23 0 chrX 1935996 1936129 -160663801 - L1PB4 LINE L1 0 6156 6021 2313 79 5 6 chrX 1936246 1936647 -160663283 - L1PA8A LINE L1 -541 5590 5190 325 191 0 0 chrX 1936647 1936715 -160663215 - L1MA7 LINE L1 -180 6111 6044 307 117 90 7 chrX 1936868 1937013 -160662917 + (TA)n Simple_repeat Simple_repeat 1 157 0 506 155 46 20 chrX 1937094 1937533 -160662397 + (TA)n Simple_repeat Simple_repeat 1 450 0 201 241 17 17 chrX 1937547 1937605 -160662325 + (TA)n Simple_repeat Simple_repeat 1 58 0 1152 226 39 77 chrX 1937979 1938418 -160661512 + MLT2B3 LTR ERVL 133 554 0 240 182 0 0 chrX 1938427 1938471 -160661459 + MLT1D LTR MaLR 2 45 -422 1729 70 8 0 chrX 1938535 1938777 -160661153 - L1PA13 LINE L1 -259 5904 5661 1067 228 231 3 chrX 1938779 1939126 -160660804 + MLT1D LTR MaLR 73 498 -7 4372 153 7 15 chrX 1940182 1940993 -160658937 - L1MA4 LINE L1 0 6300 5496 1087 294 122 46 chrX 1941518 1942298 -160657632 + Charlie2b DNA MER1_type 344 1182 -1600 837 275 67 50 chrX 1942760 1943255 -160656675 + L1MC4 LINE L1 6572 7074 -968 220 252 19 0 chrX 1943267 1943374 -160656556 + (TA)n Simple_repeat Simple_repeat 2 110 0 * 300 154 0 0 chrX 1943355 1943407 -160656523 + (TG)n Simple_repeat Simple_repeat 1 52 0 2870 134 2 29 chrX 1943491 1943982 -160655948 + MER1A DNA MER1_type 52 529 0 2478 148 2 0 chrX 1944046 1944451 -160655479 - L1PA15 LINE L1 -3 6162 5757 5094 99 17 0 chrX 1944476 1945235 -160654695 - L1PA11 LINE L1 -2 6172 5401 231 314 58 7 chrX 1945233 1945370 -160654560 + L1MC4a LINE L1 7172 7315 -493 * 3069 141 20 0 chrX 1945584 1946072 -160653858 + MER1A DNA MER1_type 32 529 0 379 390 30 4 chrX 1946700 1946969 -160652961 - L2 LINE L2 -337 2977 2702 895 166 213 68 chrX 1947041 1947124 -160652806 - MER44D DNA MER2_type -1882 609 539 479 17 17 0 chrX 1947124 1947184 -160652746 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 895 166 213 68 chrX 1947184 1947396 -160652534 - MER44D DNA MER2_type -1952 539 1 1600 89 66 27 chrX 1947420 1947678 -160652252 - THE1B LTR MaLR -96 268 1 1209 148 0 0 chrX 1947719 1947922 -160652008 + L1MA2 LINE L1 6102 6304 0 845 264 63 48 chrX 1947939 1948402 -160651528 + MLT1D LTR MaLR 27 496 -9 555 124 21 10 chrX 1948801 1948898 -160651032 + MER4A LTR ERV1 1 98 -566 292 104 21 0 chrX 1948898 1948946 -160650984 + MER4A LTR ERV1 261 309 -355 2771 63 3 30 chrX 1948946 1949311 -160650619 - THE1A LTR MaLR 0 355 1 1831 127 0 23 chrX 1949320 1949620 -160650310 + MER4A LTR ERV1 372 664 0 317 82 20 0 chrX 1950438 1950487 -160649443 + (TC)n Simple_repeat Simple_repeat 2 51 0 649 69 10 10 chrX 1950572 1950673 -160649257 + (TC)n Simple_repeat Simple_repeat 2 102 0 637 176 0 37 chrX 1951608 1951795 -160648135 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chrX 1951873 1951895 -160648035 + AT_rich Low_complexity Low_complexity 1 22 0 344 290 0 24 chrX 1952801 1952970 -160646960 + MER53 DNA DNA 2 166 -23 666 233 0 0 chrX 1953664 1953844 -160646086 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 209 327 6 0 chrX 1953855 1954011 -160645919 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 645 230 0 0 chrX 1954052 1954230 -160645700 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 208 232 11 32 chrX 1954314 1954409 -160645521 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 24 0 0 0 chrX 1954943 1954967 -160644963 + AT_rich Low_complexity Low_complexity 1 24 0 273 203 43 0 chrX 1954967 1955078 -160644852 + GA-rich Low_complexity Low_complexity 1 115 0 1772 175 3 10 chrX 1955129 1955432 -160644498 - AluJb SINE Alu -11 301 1 1976 119 55 7 chrX 1956616 1956670 -160643260 - AluSx SINE Alu -5 307 257 189 74 0 0 chrX 1956670 1956697 -160643233 + (GAGTG)n Simple_repeat Simple_repeat 1 27 0 1976 119 55 7 chrX 1956697 1956935 -160642995 - AluSx SINE Alu -55 257 1 190 172 0 35 chrX 1957009 1957067 -160642863 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chrX 1957074 1957096 -160642834 + AT_rich Low_complexity Low_complexity 1 22 0 1234 133 19 6 chrX 1957454 1957692 -160642238 + L1MA9 LINE L1 5871 6100 -83 304 188 56 44 chrX 1957699 1957859 -160642071 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 278 221 37 49 chrX 1958049 1958212 -160641718 + (TTATA)n Simple_repeat Simple_repeat 1 161 0 2301 78 3 7 chrX 1958222 1958517 -160641413 - AluY SINE Alu -17 294 1 214 244 30 30 chrX 1958597 1958728 -160641202 + (TATAA)n Simple_repeat Simple_repeat 4 134 0 301 211 46 40 chrX 1958959 1959134 -160640796 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 26 30 0 0 chrX 1959295 1959328 -160640602 + AT_rich Low_complexity Low_complexity 1 33 0 717 264 65 0 chrX 1959975 1960176 -160639754 - MER58A DNA MER1_type -10 214 1 1707 170 3 32 chrX 1960224 1960536 -160639394 + AluJo SINE Alu 2 304 -8 4448 94 14 17 chrX 1961299 1961349 -160638581 + L1PA10 LINE L1 5515 5564 -604 2465 77 0 0 chrX 1961349 1961649 -160638281 + AluY SINE Alu 1 300 -11 4448 94 14 17 chrX 1961649 1962236 -160637694 + L1PA10 LINE L1 5564 6150 -18 488 225 16 47 chrX 1962387 1962425 -160637505 + MER58B DNA MER1_type 202 240 -2180 1966 180 25 22 chrX 1962425 1962541 -160637389 + MER57A LTR ERV1 1 115 -288 1673 150 29 51 chrX 1962541 1962854 -160637076 - AluJo SINE Alu -6 306 1 1966 180 25 22 chrX 1962854 1963138 -160636792 + MER57A LTR ERV1 115 402 -1 488 225 16 47 chrX 1963138 1963228 -160636702 + MER58B DNA MER1_type 240 326 -15 21 36 0 0 chrX 1964088 1964116 -160635814 + AT_rich Low_complexity Low_complexity 1 28 0 3346 127 35 6 chrX 1964992 1965504 -160634426 + MER1A DNA MER1_type 1 527 0 347 312 0 0 chrX 1965599 1965692 -160634238 + MLT1H LTR MaLR 262 354 -195 1146 171 5 0 chrX 1965843 1966048 -160633882 + MLT2B2 LTR ERVL 1 206 -309 4484 119 4 12 chrX 1966052 1966742 -160633188 + LTR8 LTR ERV1 7 691 0 727 227 0 11 chrX 1966753 1966929 -160633001 + MLT2B2 LTR ERVL 227 400 -115 467 189 0 0 chrX 1966947 1967021 -160632909 - AluJ/FLAM SINE Alu -236 76 3 424 279 88 0 chrX 1967024 1967171 -160632759 - MER58A DNA MER1_type 0 165 6 454 246 15 75 chrX 1967276 1967475 -160632455 + LTR4 LTR ERV1 16 202 -394 827 208 39 53 chrX 1967655 1967939 -160631991 + LTR4 LTR ERV1 317 596 0 358 279 111 24 chrX 1968346 1968554 -160631376 - L1MEc LINE L1 -6027 369 144 2718 122 35 2 chrX 1968645 1969073 -160630857 + MER4E LTR ERV1 1 442 -337 1070 97 13 0 chrX 1969066 1969220 -160630710 + MER4E LTR ERV1 611 766 0 * 3667 106 18 23 chrX 1969666 1969786 -160630144 - MER41A LTR ERV1 0 554 435 2346 107 0 3 chrX 1969786 1970094 -160629836 + AluSg SINE Alu 1 307 -3 3667 106 18 23 chrX 1970094 1970530 -160629400 - MER41A LTR ERV1 -119 435 1 1627 184 27 27 chrX 1970687 1970986 -160628944 - AluJo SINE Alu -13 299 1 1699 167 10 29 chrX 1971860 1972166 -160627764 + AluJb SINE Alu 1 300 -12 21 0 0 0 chrX 1972723 1972744 -160627186 + AT_rich Low_complexity Low_complexity 1 21 0 354 286 9 9 chrX 1973259 1973371 -160626559 + (TA)n Simple_repeat Simple_repeat 2 113 0 822 213 13 49 chrX 1973994 1974015 -160625915 - MER20 DNA MER1_type -1 218 198 4543 155 51 1 chrX 1974015 1974802 -160625128 + LTR1B LTR ERV1 1 826 0 822 213 13 49 chrX 1974802 1975005 -160624925 - MER20 DNA MER1_type -21 198 2 1327 183 3 97 chrX 1975194 1975505 -160624425 - AluJb SINE Alu -30 282 1 565 223 73 113 chrX 1975511 1976212 -160623718 - L1MC5 LINE L1 -184 7777 7105 1031 230 62 43 chrX 1976363 1976661 -160623269 - MLT1A2 LTR MaLR -15 359 51 2469 113 8 3 chrX 1976661 1977023 -160622907 - THE1B LTR MaLR 0 364 1 1031 230 62 43 chrX 1977023 1977076 -160622854 - MLT1A2 LTR MaLR -323 51 1 2527 165 34 47 chrX 1977357 1977494 -160622436 - LTR24C LTR ERV1 0 593 456 2345 98 0 16 chrX 1977494 1977800 -160622130 + AluSg SINE Alu 1 301 -9 2527 165 34 47 chrX 1977800 1978260 -160621670 - LTR24C LTR ERV1 -137 456 44 2015 143 0 16 chrX 1978260 1978568 -160621362 + AluSx SINE Alu 1 303 -9 2527 165 34 47 chrX 1978568 1978609 -160621321 - LTR24C LTR ERV1 -549 44 4 1554 150 0 35 chrX 1979137 1979417 -160620513 + AluSx SINE Alu 50 312 0 1565 189 22 6 chrX 1979784 1980100 -160619830 + MSTB1 LTR MaLR 1 321 -111 1065 144 9 50 chrX 1980100 1980322 -160619608 - LTR1 LTR ERV1 0 785 573 2110 107 3 13 chrX 1980329 1980627 -160619303 + AluSx SINE Alu 1 295 -17 2264 102 99 9 chrX 1980673 1981017 -160618913 - THE1C LTR MaLR 0 375 1 449 0 0 0 chrX 1981061 1981113 -160618817 - THE1B LTR MaLR -312 52 1 2200 125 7 0 chrX 1982001 1982304 -160617626 + AluSx SINE Alu 1 305 -7 217 271 0 0 chrX 1982393 1982441 -160617489 + GA-rich Low_complexity Low_complexity 3 50 0 192 276 83 77 chrX 1982885 1983041 -160616889 - L2 LINE L2 -2 3311 3155 31 0 0 0 chrX 1983714 1983745 -160616185 + AT_rich Low_complexity Low_complexity 1 31 0 1744 173 3 7 chrX 1983762 1984045 -160615885 - AluSx SINE Alu -30 282 1 1473 166 31 15 chrX 1984067 1984202 -160615728 - AluJo SINE Alu -49 263 121 360 0 0 0 chrX 1984202 1984242 -160615688 + (TA)n Simple_repeat Simple_repeat 2 41 0 1473 166 31 15 chrX 1984242 1984365 -160615565 - AluJo SINE Alu -191 121 1 327 68 0 0 chrX 1984376 1984420 -160615510 - FLAM SINE Alu -8 125 82 317 358 55 30 chrX 1984530 1984731 -160615199 - MIR SINE MIR -31 231 26 1968 163 38 10 chrX 1984905 1985297 -160614633 - MER57A LTR ERV1 0 403 1 2416 28 65 0 chrX 1985775 1986066 -160613864 - AluY SINE Alu -1 310 1 400 170 26 118 chrX 1987024 1987124 -160612806 + MER4A LTR ERV1 3 88 -576 2110 120 3 0 chrX 1987124 1987463 -160612467 - AluSx SINE Alu 0 340 1 400 170 26 118 chrX 1987463 1987513 -160612417 + MER4A LTR ERV1 88 141 -523 602 199 86 94 chrX 1987531 1987787 -160612143 - LTR13 LTR ERVK -753 254 1 643 158 0 0 chrX 1987787 1987882 -160612048 - AluS SINE Alu -217 95 1 583 198 0 0 chrX 1987882 1987993 -160611937 - L1M3 LINE L1 -505 5675 5565 971 131 23 11 chrX 1988041 1988217 -160611713 - Charlie3 DNA MER1_type -9 2701 2524 385 59 191 0 chrX 1988220 1988288 -160611642 - Charlie3 DNA MER1_type -2629 81 1 1237 198 60 35 chrX 1988288 1988607 -160611323 + L1MB5 LINE L1 5838 6164 -10 21 0 0 0 chrX 1988608 1988629 -160611301 + AT_rich Low_complexity Low_complexity 1 21 0 1402 207 43 20 chrX 1988859 1989158 -160610772 + AluJo SINE Alu 1 306 -6 233 307 72 30 chrX 1989311 1989477 -160610453 - L2 LINE L2 -51 3262 3090 195 100 0 0 chrX 1989835 1989865 -160610065 + (TC)n Simple_repeat Simple_repeat 2 31 0 240 149 0 0 chrX 1990193 1990240 -160609690 + (TATG)n Simple_repeat Simple_repeat 2 48 0 996 177 5 7 chrX 1990255 1990869 -160609061 + (TCCA)n Simple_repeat Simple_repeat 3 787 0 738 131 17 28 chrX 1990910 1991086 -160608844 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 239 261 15 0 chrX 1991089 1991154 -160608776 + (TATG)n Simple_repeat Simple_repeat 2 67 0 198 351 158 12 chrX 1991250 1991421 -160608509 - MIR SINE MIR -51 211 16 43 81 0 0 chrX 1991561 1991660 -160608270 + AT_rich Low_complexity Low_complexity 1 99 0 25 51 0 0 chrX 1992283 1992322 -160607608 + AT_rich Low_complexity Low_complexity 1 39 0 261 119 0 0 chrX 1993009 1993051 -160606879 + (CA)n Simple_repeat Simple_repeat 1 42 0 217 254 0 0 chrX 1993690 1993745 -160606185 + (TA)n Simple_repeat Simple_repeat 1 55 0 1652 190 19 13 chrX 1994316 1994626 -160605304 + AluJo SINE Alu 1 312 0 24 0 0 0 chrX 1994675 1994699 -160605231 + AT_rich Low_complexity Low_complexity 1 24 0 244 0 56 0 chrX 1995036 1995072 -160604858 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1664 152 92 7 chrX 1995079 1995362 -160604568 + AluJb SINE Alu 1 307 -5 317 167 13 0 chrX 1995432 1995510 -160604420 + GA-rich Low_complexity Low_complexity 2 80 0 2203 92 0 3 chrX 1996214 1996525 -160603405 - AluSc SINE Alu 0 310 1 300 322 68 19 chrX 1996529 1996734 -160603196 - L1M4 LINE L1 -845 5301 5087 24 0 0 0 chrX 1997448 1997472 -160602458 + AT_rich Low_complexity Low_complexity 1 24 0 3742 79 118 0 chrX 1997790 1998193 -160601737 + LTR66 LTR ERVL 1 486 -124 216 0 0 0 chrX 1998193 1998217 -160601713 + (TA)n Simple_repeat Simple_repeat 2 25 0 3742 79 118 0 chrX 1998217 1998357 -160601573 + LTR66 LTR ERVL 486 608 -2 19180 165 18 3 chrX 1998374 2001729 -160598201 + HERVL66 LTR ERVL 925 4329 0 3982 100 38 20 chrX 2001729 2002133 -160597797 + LTR66 LTR ERVL 1 421 -189 351 0 0 0 chrX 2002133 2002172 -160597758 + (TG)n Simple_repeat Simple_repeat 2 40 0 3982 100 38 20 chrX 2002172 2002366 -160597564 + LTR66 LTR ERVL 421 610 0 2051 155 0 3 chrX 2002540 2002843 -160597087 + AluJb SINE Alu 9 310 -2 384 324 144 28 chrX 2003786 2004215 -160595715 + L1M4 LINE L1 4549 5027 -1119 21 57 0 0 chrX 2004343 2004378 -160595552 + AT_rich Low_complexity Low_complexity 1 35 0 1382 118 52 38 chrX 2004485 2004772 -160595158 - THE1C LTR MaLR 0 375 85 368 61 0 0 chrX 2004762 2004811 -160595119 - Alu SINE Alu -251 49 1 * 575 148 9 19 chrX 2004834 2004942 -160594988 - THE1C LTR MaLR -268 107 1 24 53 0 0 chrX 2005068 2005106 -160594824 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chrX 2005297 2005328 -160594602 + AT_rich Low_complexity Low_complexity 1 31 0 1273 166 57 40 chrX 2005332 2005579 -160594351 + AluJb SINE Alu 60 310 -2 561 292 162 68 chrX 2005944 2006065 -160593865 + L1M4 LINE L1 2175 2283 -3863 2405 101 3 0 chrX 2006065 2006373 -160593557 + AluSp SINE Alu 1 309 -4 2323 62 0 55 chrX 2006378 2006703 -160593227 + AluY SINE Alu 3 309 -2 561 292 162 68 chrX 2006703 2007784 -160592146 + L1M4 LINE L1 2286 3497 -2649 296 282 94 47 chrX 2007862 2008011 -160591919 + L2 LINE L2 2738 2893 -421 691 168 22 0 chrX 2008078 2008215 -160591715 - L1MA7 LINE L1 -5 6286 6147 22 35 0 0 chrX 2008693 2008722 -160591208 + AT_rich Low_complexity Low_complexity 1 29 0 1643 169 25 0 chrX 2009076 2009360 -160590570 - AluSx SINE Alu -21 291 1 27 49 0 0 chrX 2010029 2010070 -160589860 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chrX 2010427 2010462 -160589468 + AT_rich Low_complexity Low_complexity 1 35 0 398 195 23 8 chrX 2011516 2011644 -160588286 + CT-rich Low_complexity Low_complexity 1 130 0 186 43 0 0 chrX 2012951 2012974 -160586956 + (CA)n Simple_repeat Simple_repeat 1 23 0 2232 115 0 7 chrX 2013127 2013432 -160586498 + AluSx SINE Alu 1 303 -9 672 280 93 21 chrX 2014504 2014655 -160585275 - L1M4 LINE L1 -1230 4916 4777 770 167 0 0 chrX 2014655 2014775 -160585155 - FLAM_A SINE Alu -13 120 1 672 280 93 21 chrX 2014775 2015152 -160584778 - L1M4 LINE L1 -1369 4777 4350 344 240 77 38 chrX 2015172 2015355 -160584575 - L1M4 LINE L1 -2101 4045 3856 1463 189 38 10 chrX 2015644 2015935 -160583995 + AluJo SINE Alu 1 299 -13 1721 100 118 14 chrX 2015936 2016215 -160583715 + AluYa8 SINE Alu 1 308 -2 748 121 35 14 chrX 2016244 2016582 -160583348 + GA-rich Low_complexity Low_complexity 1 344 0 1635 144 4 0 chrX 2016618 2016854 -160583076 - AluSg SINE Alu -73 237 1 868 170 114 1 chrX 2016876 2017081 -160582849 - L1MB1 LINE L1 -287 5902 5691 578 171 16 54 chrX 2017136 2017265 -160582665 + L1MC1 LINE L1 6026 6149 -184 1532 133 54 11 chrX 2017267 2017545 -160582385 - LTR38B LTR ERV1 0 610 321 * 2288 145 18 5 chrX 2017541 2017927 -160582003 - LTR38B LTR ERV1 -219 391 1 872 198 6 11 chrX 2017927 2018109 -160581821 + L1MC1 LINE L1 6148 6328 -5 407 148 62 16 chrX 2018969 2019282 -160580648 + (TCTA)n Simple_repeat Simple_repeat 1 327 0 29 0 0 0 chrX 2019324 2019353 -160580577 + AT_rich Low_complexity Low_complexity 1 29 0 228 312 71 21 chrX 2020261 2020402 -160579528 + MIR SINE MIR 91 238 -24 201 220 0 40 chrX 2020694 2020744 -160579186 + (TATG)n Simple_repeat Simple_repeat 1 48 0 * 211 294 0 0 chrX 2020711 2020779 -160579151 + (TA)n Simple_repeat Simple_repeat 2 69 0 217 182 15 15 chrX 2020811 2020877 -160579053 + (TA)n Simple_repeat Simple_repeat 2 67 0 277 229 29 6 chrX 2020933 2021109 -160578821 + (TA)n Simple_repeat Simple_repeat 1 180 0 357 273 0 37 chrX 2021185 2021372 -160578558 + (TA)n Simple_repeat Simple_repeat 1 180 0 363 261 7 14 chrX 2021477 2021615 -160578315 + (TA)n Simple_repeat Simple_repeat 2 138 0 219 139 0 0 chrX 2021654 2021690 -160578240 + (TA)n Simple_repeat Simple_repeat 1 36 0 223 191 0 21 chrX 2021725 2021772 -160578158 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1868 142 10 10 chrX 2021780 2022075 -160577855 - AluSx SINE Alu -17 295 1 227 234 78 0 chrX 2022124 2022201 -160577729 - LTR50 LTR ERVL 0 795 713 234 0 0 0 chrX 2023103 2023129 -160576801 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 378 0 0 0 chrX 2023128 2023170 -160576760 + (CA)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chrX 2023372 2023397 -160576533 + AT_rich Low_complexity Low_complexity 1 25 0 2913 177 47 31 chrX 2023399 2024044 -160575886 - LTR8A LTR ERV1 -60 667 13 1579 150 64 16 chrX 2024258 2024571 -160575359 + MER4A LTR ERV1 1 328 -336 23 0 0 0 chrX 2024637 2024660 -160575270 + AT_rich Low_complexity Low_complexity 1 23 0 359 143 16 16 chrX 2024737 2024800 -160575130 + MER4C LTR ERV1 294 356 -109 5299 90 6 44 chrX 2025397 2026230 -160573700 + L1PB1 LINE L1 5353 6149 -2 220 229 24 0 chrX 2026372 2026455 -160573475 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 2489 89 15 36 chrX 2027357 2027539 -160572391 - L1PB1 LINE L1 -5 6146 5962 2414 89 0 3 chrX 2027539 2027852 -160572078 - AluSx SINE Alu 0 312 1 2489 89 15 36 chrX 2027852 2028060 -160571870 - L1PB1 LINE L1 -189 5962 5764 1750 90 43 0 chrX 2028102 2028358 -160571572 - L1PB1 LINE L1 -360 5791 5525 279 0 0 0 chrX 2030374 2030405 -160569525 + (CA)n Simple_repeat Simple_repeat 2 32 0 2296 103 0 3 chrX 2030847 2031158 -160568772 + AluSq SINE Alu 1 310 -3 53 40 0 0 chrX 2031812 2031886 -160568044 + AT_rich Low_complexity Low_complexity 1 74 0 3069 168 27 14 chrX 2031959 2032149 -160567781 - L1MB3 LINE L1 -19 6164 5978 4988 75 6 3 chrX 2032149 2032807 -160567123 + PABL_A LTR ERV1 1 660 0 3069 168 27 14 chrX 2032807 2033242 -160566688 - L1MB3 LINE L1 -205 5978 5531 3781 49 0 0 chrX 2033242 2033707 -160566223 + L1PA5 LINE L1 5683 6150 -4 401 190 0 13 chrX 2033736 2033815 -160566115 - L1MB3 LINE L1 -646 5528 5451 2097 118 3 10 chrX 2033846 2034150 -160565780 + AluSx SINE Alu 1 302 -10 378 0 0 0 chrX 2034207 2034249 -160565681 + (TG)n Simple_repeat Simple_repeat 1 42 0 181 125 94 0 chrX 2034502 2034534 -160565396 - MER5C DNA MER1_type -199 125 91 238 284 81 0 chrX 2034636 2034710 -160565220 - L2 LINE L2 0 3272 3193 1627 168 3 56 chrX 2035009 2035313 -160564617 + AluJo SINE Alu 3 290 -22 279 226 36 14 chrX 2035649 2035732 -160564198 - L1MB3 LINE L1 -689 5462 5391 1832 159 0 28 chrX 2035732 2036053 -160563877 - AluSx SINE Alu 0 312 1 279 0 0 0 chrX 2036060 2036091 -160563839 + (TTA)n Simple_repeat Simple_repeat 3 33 0 25 75 0 0 chrX 2036192 2036245 -160563685 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chrX 2036479 2036507 -160563423 + AT_rich Low_complexity Low_complexity 1 28 0 1078 281 201 14 chrX 2037114 2037631 -160562299 - MLT1E2 LTR MaLR -12 614 1 351 192 0 0 chrX 2037690 2037763 -160562167 + (ATG)n Simple_repeat Simple_repeat 1 73 0 892 155 3 14 chrX 2037785 2038154 -160561776 + (ATG)n Simple_repeat Simple_repeat 1 364 0 209 222 32 0 chrX 2038796 2038859 -160561071 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 423 0 0 0 chrX 2038880 2038927 -160561003 + (CA)n Simple_repeat Simple_repeat 2 48 0 2206 113 30 54 chrX 2038962 2039332 -160560598 + THE1B LTR MaLR 1 361 -3 1928 144 7 0 chrX 2039332 2039609 -160560321 - AluSx SINE Alu -33 279 1 404 100 39 56 chrX 2040497 2040677 -160559253 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 339 177 48 8 chrX 2040677 2040801 -160559129 + (TA)n Simple_repeat Simple_repeat 1 129 0 2051 134 3 3 chrX 2040812 2041103 -160558827 - AluSx SINE Alu -21 291 1 745 172 9 0 chrX 2041413 2041529 -160558401 + FLAM_C SINE Alu 1 117 -16 198 0 0 0 chrX 2041557 2041579 -160558351 + (TG)n Simple_repeat Simple_repeat 2 23 0 456 263 0 43 chrX 2041738 2041924 -160558006 + CT-rich Low_complexity Low_complexity 3 180 0 217 189 0 19 chrX 2041952 2042005 -160557925 + T-rich Low_complexity Low_complexity 3 54 0 300 221 0 15 chrX 2042199 2042267 -160557663 - L1MC4 LINE L1 -1340 6702 6636 1120 165 0 0 chrX 2042267 2042437 -160557493 + AluJb SINE Alu 133 302 -10 1792 148 0 7 chrX 2042469 2042759 -160557171 - LTR51 LTR ERV1 0 671 384 324 176 0 0 chrX 2042760 2042828 -160557102 + (ATG)n Simple_repeat Simple_repeat 1 68 0 2099 155 57 5 chrX 2042831 2043198 -160556732 - LTR51 LTR ERV1 -285 386 1 2055 111 0 11 chrX 2043293 2043573 -160556357 + AluSx SINE Alu 24 300 -12 2037 136 7 13 chrX 2044806 2045115 -160554815 - AluSx SINE Alu -5 307 1 258 287 172 25 chrX 2045159 2045281 -160554649 - L2 LINE L2 -4 3309 3170 963 254 9 0 chrX 2045353 2045570 -160554360 + MER58A DNA MER1_type 6 224 0 229 270 35 43 chrX 2045583 2045698 -160554232 - L2 LINE L2 -233 3080 2967 1985 234 52 74 chrX 2045883 2046513 -160553417 - L1MD2 LINE L1 -16 6343 5730 1736 157 7 27 chrX 2046513 2046812 -160553118 - AluJb SINE Alu -19 293 1 1985 234 52 74 chrX 2046812 2046926 -160553004 - L1MD2 LINE L1 -629 5730 5615 30 27 0 0 chrX 2047200 2047237 -160552693 + AT_rich Low_complexity Low_complexity 1 37 0 3198 95 101 141 chrX 2048062 2048777 -160551153 + LTR12 LTR ERV1 1 686 -2 866 65 73 16 chrX 2048779 2048918 -160551012 + LTR12 LTR ERV1 270 713 -1 1728 184 0 14 chrX 2048992 2049285 -160550645 + AluJo SINE Alu 1 289 -23 639 208 0 0 chrX 2050533 2050663 -160549267 - FLAM_C SINE Alu -13 130 1 26 30 0 0 chrX 2050860 2050893 -160549037 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chrX 2051509 2051535 -160548395 + AT_rich Low_complexity Low_complexity 1 26 0 2319 87 3 10 chrX 2051541 2051850 -160548080 + AluY SINE Alu 3 309 -2 366 23 0 0 chrX 2052286 2052329 -160547601 + (CA)n Simple_repeat Simple_repeat 2 44 0 1673 172 26 20 chrX 2052608 2052910 -160547020 - AluJb SINE Alu -8 304 1 5181 125 44 18 chrX 2053302 2054182 -160545748 - MER4D LTR ERV1 0 903 1 2846 157 28 87 chrX 2054287 2054440 -160545490 + MER51D LTR ERV1 10 171 -486 2487 53 0 3 chrX 2054440 2054740 -160545190 + AluY SINE Alu 1 299 -12 2846 157 28 87 chrX 2054740 2055275 -160544655 + MER51D LTR ERV1 171 657 0 269 135 19 0 chrX 2055293 2055345 -160544585 + CT-rich Low_complexity Low_complexity 2 54 0 201 339 0 0 chrX 2055806 2055865 -160544065 + L2 LINE L2 3240 3298 -15 830 157 0 0 chrX 2056477 2056598 -160543332 + FLAM_C SINE Alu 2 122 -11 192 77 0 0 chrX 2056598 2056624 -160543306 + (CAGT)n Simple_repeat Simple_repeat 4 29 0 369 163 0 93 chrX 2057023 2057109 -160542821 + MER51D LTR ERV1 119 196 -461 1827 164 18 0 chrX 2057277 2057563 -160542367 + AluSx SINE Alu 4 294 -18 215 289 53 0 chrX 2057945 2058021 -160541909 + L2 LINE L2 3225 3304 -9 1729 163 4 7 chrX 2058334 2058610 -160541320 + AluJo SINE Alu 1 275 -37 425 196 14 28 chrX 2058611 2058754 -160541176 + GA-rich Low_complexity Low_complexity 4 144 0 2074 192 166 34 chrX 2059332 2060062 -160539868 - LTR1B LTR ERV1 0 826 1 2023 133 7 0 chrX 2060152 2060437 -160539493 + AluSq SINE Alu 4 290 -23 210 37 0 0 chrX 2060440 2060467 -160539463 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 637 168 0 0 chrX 2060480 2060587 -160539343 + FLAM_C SINE Alu 3 109 -34 27 29 0 0 chrX 2060587 2060621 -160539309 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chrX 2060944 2060976 -160538954 + AT_rich Low_complexity Low_complexity 1 32 0 1693 183 24 0 chrX 2061110 2061399 -160538531 + AluJb SINE Alu 6 301 -11 797 226 37 5 chrX 2061884 2062070 -160537860 + MER3 DNA MER1_type 1 192 -17 2697 128 32 40 chrX 2062070 2062666 -160537264 + MER4E LTR ERV1 1 779 0 3877 117 14 0 chrX 2062754 2063311 -160536619 - MER61E LTR ERV1 -4 565 1 1208 114 0 0 chrX 2063670 2063836 -160536094 - LTR8 LTR ERV1 0 691 526 1615 132 15 48 chrX 2063874 2064147 -160535783 - AluSx SINE Alu 0 312 49 559 189 0 0 chrX 2064151 2064241 -160535689 - AluS SINE Alu -222 90 1 2082 204 14 85 chrX 2064242 2064817 -160535113 - LTR8 LTR ERV1 -157 534 1 2538 50 0 7 chrX 2066230 2066531 -160533399 - AluY SINE Alu -12 299 1 3073 109 2 0 chrX 2066628 2067060 -160532870 + MER57B LTR ERV1 2 434 0 21 57 0 0 chrX 2067373 2067408 -160532522 + AT_rich Low_complexity Low_complexity 1 35 0 297 75 0 0 chrX 2067539 2067579 -160532351 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 469 120 34 46 chrX 2068064 2068239 -160531691 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 834 327 28 13 chrX 2068309 2068707 -160531223 - L1MC4a LINE L1 -1968 5840 5437 488 59 15 0 chrX 2068721 2068789 -160531141 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 375 314 134 28 chrX 2068790 2069073 -160530857 - L1MC4a LINE L1 -1027 5119 4807 234 243 54 0 chrX 2069339 2069413 -160530517 + LTR33 LTR ERVL 435 512 -9 1680 161 9 24 chrX 2069765 2070094 -160529836 - L1MA8 LINE L1 -3 6288 5965 2609 7 0 0 chrX 2070384 2070666 -160529264 + AluYa5 SINE Alu 22 303 -8 456 349 0 0 chrX 2070890 2071036 -160528894 - L3 LINE CR1 -382 1195 1050 456 360 129 33 chrX 2071134 2071529 -160528401 - L3 LINE CR1 -742 835 403 271 184 0 18 chrX 2071637 2071751 -160528179 + (TA)n Simple_repeat Simple_repeat 1 112 0 1802 157 78 23 chrX 2072248 2072593 -160527337 - THE1B LTR MaLR 0 364 1 273 336 0 22 chrX 2073075 2073209 -160526721 + L1ME1 LINE L1 1441 1571 -4825 902 277 38 47 chrX 2073237 2073767 -160526163 - L1MC4a LINE L1 -3400 2746 2222 1048 135 0 59 chrX 2073781 2073951 -160525979 - FRAM SINE Alu -20 156 1 590 268 39 14 chrX 2074155 2074439 -160525491 + L1ME1 LINE L1 2868 3158 -3057 345 47 0 0 chrX 2074546 2074589 -160525341 + (CA)n Simple_repeat Simple_repeat 2 44 0 412 253 14 91 chrX 2074597 2074818 -160525112 + L1MD3 LINE L1 7787 7990 -5 283 304 59 37 chrX 2075252 2075627 -160524303 + L1ME1 LINE L1 4992 5374 -841 1412 278 74 34 chrX 2075681 2075871 -160524059 + L1ME1 LINE L1 5426 5607 -628 1926 141 31 0 chrX 2075871 2076161 -160523769 - AluSx SINE Alu -12 300 2 1412 278 74 34 chrX 2076161 2076672 -160523258 + L1ME1 LINE L1 5607 6155 -80 370 191 99 15 chrX 2076695 2076826 -160523104 - L1M4 LINE L1 -2909 3237 3096 366 276 40 55 chrX 2076839 2076945 -160522985 - L1M4 LINE L1 -3007 3139 3036 2140 114 44 33 chrX 2076945 2077305 -160522625 + THE1B LTR MaLR 1 364 0 366 276 40 55 chrX 2077305 2077397 -160522533 - L1M4 LINE L1 -3110 3036 2944 318 273 12 19 chrX 2077470 2077631 -160522299 + (TA)n Simple_repeat Simple_repeat 1 160 0 453 36 0 0 chrX 2077733 2077788 -160522142 + (TA)n Simple_repeat Simple_repeat 2 56 0 578 313 36 60 chrX 2078034 2078408 -160521522 + L1ME2 LINE L1 5741 6106 -58 2471 98 27 11 chrX 2078408 2078777 -160521153 + THE1C LTR MaLR 1 375 0 578 313 36 60 chrX 2078777 2078817 -160521113 + L1ME2 LINE L1 6106 6145 -19 1999 123 14 10 chrX 2079831 2080124 -160519806 + THE1B LTR MaLR 68 361 -3 320 249 50 86 chrX 2080456 2080677 -160519253 - L1MC5 LINE L1 -438 7523 7311 2652 46 0 0 chrX 2081457 2081762 -160518168 + AluY SINE Alu 1 305 -6 220 224 15 0 chrX 2081955 2082022 -160517908 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 1713 176 13 0 chrX 2082444 2082745 -160517185 + L1PA16 LINE L1 5729 6033 -133 1154 158 49 25 chrX 2082745 2082948 -160516982 - THE1B LTR MaLR 0 364 157 237 132 44 22 chrX 2083871 2083962 -160515968 + (TA)n Simple_repeat Simple_repeat 1 93 0 73 79 0 0 chrX 2083968 2084108 -160515822 + AT_rich Low_complexity Low_complexity 1 140 0 337 253 0 77 chrX 2084485 2084679 -160515251 + T-rich Low_complexity Low_complexity 2 180 0 * 361 229 29 34 chrX 2084534 2084709 -160515221 + (TTG)n Simple_repeat Simple_repeat 2 175 0 204 135 32 40 chrX 2085243 2085369 -160514561 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 302 138 52 23 chrX 2085379 2085553 -160514377 + (TA)n Simple_repeat Simple_repeat 2 180 0 198 149 27 14 chrX 2085681 2085755 -160514175 + (TA)n Simple_repeat Simple_repeat 2 76 0 200 197 34 14 chrX 2085785 2085932 -160513998 + (TA)n Simple_repeat Simple_repeat 2 151 0 2303 68 0 3 chrX 2085971 2086263 -160513667 + AluY SINE Alu 1 291 -20 1231 138 63 25 chrX 2086622 2086861 -160513069 + LTR29 LTR ERV1 140 387 -235 808 247 233 31 chrX 2087559 2087817 -160512113 - L1MD2 LINE L1 -21 6836 6631 2616 101 3 6 chrX 2087817 2088182 -160511748 + THE1B LTR MaLR 1 364 0 808 247 233 31 chrX 2088182 2088404 -160511526 - L1MD2 LINE L1 -226 6631 6259 1502 209 3 7 chrX 2088467 2088769 -160511161 - AluJb SINE Alu -11 301 1 341 120 8 51 chrX 2089145 2089262 -160510668 + (TA)n Simple_repeat Simple_repeat 2 113 0 496 282 86 48 chrX 2089303 2089594 -160510336 - MLT1L LTR MaLR -5 610 309 1624 196 0 24 chrX 2089830 2090144 -160509786 - AluJb SINE Alu 0 307 1 184 171 49 16 chrX 2090403 2090526 -160509404 + (TA)n Simple_repeat Simple_repeat 2 128 0 22 35 0 0 chrX 2090731 2090760 -160509170 + AT_rich Low_complexity Low_complexity 1 29 0 274 200 156 37 chrX 2091072 2091207 -160508723 - L1MD2 LINE L1 -2295 6011 5861 2552 261 51 44 chrX 2091932 2093069 -160506861 - L1MD2 LINE L1 -2345 4299 3155 1189 261 28 59 chrX 2093078 2093504 -160506426 - L1MD2 LINE L1 -6105 437 25 221 200 0 18 chrX 2093518 2093573 -160506357 + T-rich Low_complexity Low_complexity 1 54 0 2113 183 6 8 chrX 2093724 2094090 -160505840 + MLT1A1 LTR MaLR 1 365 0 1190 309 64 8 chrX 2094128 2094910 -160505020 - L1ME LINE L1 -3174 2906 2081 22 94 0 0 chrX 2094941 2095005 -160504925 + AT_rich Low_complexity Low_complexity 1 64 0 392 300 125 44 chrX 2095270 2095762 -160504168 - L1ME LINE L1 -4549 1531 1056 297 265 19 45 chrX 2095784 2095982 -160503948 - L1ME LINE L1 -5030 1040 839 22 56 0 0 chrX 2096178 2096214 -160503716 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chrX 2096541 2096583 -160503347 + AT_rich Low_complexity Low_complexity 1 42 0 751 167 0 0 chrX 2096583 2096703 -160503227 - FLAM_C SINE Alu -11 122 3 542 262 152 0 chrX 2097067 2097231 -160502699 + MER58A DNA MER1_type 1 189 -35 1182 262 131 22 chrX 2097349 2097754 -160502176 + MLT1E2 LTR MaLR 138 586 -40 2399 115 25 0 chrX 2097945 2098301 -160501629 + L1PA16 LINE L1 5793 6157 -9 340 154 53 28 chrX 2098829 2099082 -160500848 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 470 120 82 0 chrX 2099149 2099385 -160500545 + (TAGA)n Simple_repeat Simple_repeat 1 255 0 180 0 0 0 chrX 2100023 2100043 -160499887 + (TTTTC)n Simple_repeat Simple_repeat 1 20 0 1483 184 4 8 chrX 2100046 2100307 -160499623 - AluJo SINE Alu -38 274 15 2541 93 31 6 chrX 2100776 2101131 -160498799 - THE1B LTR MaLR 0 364 1 1118 195 108 70 chrX 2101415 2101702 -160498228 - AluJo SINE Alu -3 299 2 192 217 0 0 chrX 2101876 2101922 -160498008 + CT-rich Low_complexity Low_complexity 2 47 0 1622 138 113 14 chrX 2102075 2102357 -160497573 + AluSg SINE Alu 1 310 0 1654 175 3 28 chrX 2103248 2103570 -160496360 + AluJo SINE Alu 1 315 0 1815 153 22 26 chrX 2104848 2105161 -160494769 + AluJo SINE Alu 1 312 0 2174 74 3 7 chrX 2105787 2106071 -160493859 - AluSg SINE Alu 0 310 28 1528 155 16 0 chrX 2106267 2106525 -160493405 - L1PA16 LINE L1 -22 6144 5883 3857 153 16 36 chrX 2107264 2107957 -160491973 + MER50 LTR ERV1 56 734 0 2585 100 5 26 chrX 2107962 2108343 -160491587 + THE1C LTR MaLR 3 375 0 732 257 9 36 chrX 2108414 2108636 -160491294 - MER20 DNA MER1_type -3 216 1 238 304 59 29 chrX 2108636 2108739 -160491191 + L2 LINE L2 3155 3301 -12 486 368 103 13 chrX 2109591 2110045 -160489885 - L2 LINE L2 -534 2780 2286 31 26 0 0 chrX 2110065 2110103 -160489827 + AT_rich Low_complexity Low_complexity 1 38 0 1094 206 23 0 chrX 2110124 2110386 -160489544 - L1MA3 LINE L1 0 6305 6038 243 152 0 0 chrX 2110436 2110482 -160489448 + (TG)n Simple_repeat Simple_repeat 1 46 0 316 298 38 100 chrX 2110602 2110847 -160489083 + L1MC4a LINE L1 5670 5889 -232 1832 193 107 5 chrX 2110847 2111266 -160488664 - MLT2C2 LTR ERVL 0 464 3 316 298 38 100 chrX 2111266 2111386 -160488544 + L1MC4a LINE L1 5889 6015 -106 1971 116 23 20 chrX 2112006 2112307 -160487623 - AluSc SINE Alu -5 304 3 24 96 0 0 chrX 2112376 2112449 -160487481 + AT_rich Low_complexity Low_complexity 1 73 0 918 109 33 51 chrX 2112717 2112906 -160487024 - THE1C LTR MaLR 0 375 203 634 85 0 11 chrX 2112905 2112999 -160486931 - THE1C LTR MaLR -335 93 1 * 21 0 0 0 chrX 2113079 2113100 -160486830 + AT_rich Low_complexity Low_complexity 1 21 0 1227 240 14 35 chrX 2113478 2113766 -160486164 - AluJo SINE Alu -30 282 1 367 275 34 60 chrX 2113777 2113828 -160486102 + L1ME LINE L1 5562 5613 -508 2172 110 0 41 chrX 2113828 2114147 -160485783 - AluSx SINE Alu -6 306 1 367 275 34 60 chrX 2114147 2114244 -160485686 + L1ME LINE L1 5613 5706 -415 303 192 0 0 chrX 2114404 2114477 -160485453 + GA-rich Low_complexity Low_complexity 2 74 0 2127 137 22 6 chrX 2114656 2115014 -160484916 - MLT1A1 LTR MaLR -1 364 1 2514 116 83 5 chrX 2116173 2116570 -160483360 - MSTA LTR MaLR 0 428 1 23 0 0 0 chrX 2118351 2118374 -160481556 + AT_rich Low_complexity Low_complexity 1 23 0 1615 199 10 7 chrX 2118855 2119151 -160480779 - AluJo SINE Alu -15 297 1 1789 101 41 48 chrX 2119371 2119639 -160480291 + AluSq SINE Alu 24 289 -24 246 105 0 0 chrX 2119847 2119885 -160480045 + (TG)n Simple_repeat Simple_repeat 2 39 0 2559 108 3 3 chrX 2119885 2120246 -160479684 + THE1B LTR MaLR 4 364 0 429 20 0 0 chrX 2120246 2120296 -160479634 + (TG)n Simple_repeat Simple_repeat 2 51 0 243 171 49 24 chrX 2121072 2121154 -160478776 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 1060 183 0 0 chrX 2121353 2121528 -160478402 + AluJb SINE Alu 122 296 -16 2687 85 3 0 chrX 2121832 2122186 -160477744 + THE1A LTR MaLR 1 355 0 2112 116 10 0 chrX 2122473 2122767 -160477163 + AluSx SINE Alu 13 309 -3 1864 181 0 3 chrX 2123472 2123776 -160476154 + AluJo SINE Alu 3 305 -7 2030 135 10 0 chrX 2123849 2124137 -160475793 + AluSx SINE Alu 1 291 -21 853 131 14 7 chrX 2124357 2124502 -160475428 + Charlie3 DNA MER1_type 2561 2706 -4 4470 164 21 16 chrX 2124745 2125633 -160474297 + MER4D LTR ERV1 1 893 -10 2086 131 3 13 chrX 2125701 2126006 -160473924 + AluSx SINE Alu 1 302 -10 283 246 34 17 chrX 2126862 2126980 -160472950 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 732 330 78 48 chrX 2126985 2127228 -160472702 + L1M4 LINE L1 2737 2971 -3175 2694 176 49 76 chrX 2127228 2127938 -160471992 - LTR8 LTR ERV1 0 691 1 732 330 78 48 chrX 2127938 2128574 -160471356 + L1M4 LINE L1 2971 3643 -2503 3822 121 16 16 chrX 2128575 2129210 -160470720 - MER41B LTR ERV1 0 635 1 596 244 23 23 chrX 2129284 2129460 -160470470 + LTR68 LTR ERV1 19 194 -546 681 194 69 0 chrX 2129643 2129803 -160470127 + LTR68 LTR ERV1 479 649 -91 1030 168 61 61 chrX 2129900 2129978 -160469952 - AluJo SINE Alu -14 298 221 2078 145 0 0 chrX 2129978 2130275 -160469655 - AluSx SINE Alu -15 297 1 1030 168 61 61 chrX 2130275 2130372 -160469558 - AluJo SINE Alu -91 221 120 351 0 0 0 chrX 2130372 2130411 -160469519 + (TA)n Simple_repeat Simple_repeat 2 40 0 1030 168 61 61 chrX 2130411 2130448 -160469482 - AluJo SINE Alu -191 121 85 1667 185 3 7 chrX 2130843 2131145 -160468785 + AluJo SINE Alu 1 301 -11 575 338 81 40 chrX 2131176 2131909 -160468021 + L1M4 LINE L1 4036 4798 -1348 2013 112 42 0 chrX 2132283 2132570 -160467360 + AluSx SINE Alu 1 299 -13 1865 160 0 13 chrX 2133169 2133476 -160466454 - AluJo SINE Alu -3 309 7 2239 111 0 22 chrX 2133571 2133887 -160466043 + AluSx SINE Alu 1 309 -3 1869 156 7 0 chrX 2134417 2134743 -160465187 - AluJb SINE Alu 0 328 1 514 140 0 19 chrX 2134985 2135092 -160464838 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 2356 77 0 3 chrX 2135523 2135821 -160464109 - AluSg SINE Alu -13 297 1 1217 196 0 44 chrX 2136165 2136440 -160463490 - AluJo SINE Alu -10 302 40 198 103 0 0 chrX 2136914 2136943 -160462987 + (TG)n Simple_repeat Simple_repeat 2 30 0 1791 174 23 3 chrX 2137726 2138077 -160461853 - MLT1A1 LTR MaLR -1 364 7 1291 138 46 5 chrX 2138079 2138297 -160461633 + MER30 DNA MER1_type 4 230 0 23 33 0 0 chrX 2139217 2139247 -160460683 + AT_rich Low_complexity Low_complexity 1 30 0 231 351 54 40 chrX 2139330 2139478 -160460452 - L3 LINE CR1 -2 1575 1426 3502 89 26 4 chrX 2139817 2140323 -160459607 + L1PB2 LINE L1 5635 6151 0 288 0 0 0 chrX 2140342 2140374 -160459556 + (TA)n Simple_repeat Simple_repeat 2 33 0 2473 40 3 10 chrX 2140942 2141242 -160458688 - AluY SINE Alu -13 298 1 1824 231 59 12 chrX 2141287 2141358 -160458572 - L1MB5 LINE L1 -39 6135 6069 1772 145 11 11 chrX 2141358 2141675 -160458255 - AluJb SINE Alu 0 317 1 1824 231 59 12 chrX 2141675 2142095 -160457835 - L1MB5 LINE L1 -105 6069 5620 4694 88 25 1 chrX 2142143 2142816 -160457114 + L1PB1 LINE L1 5455 6143 -8 3146 105 6 0 chrX 2144018 2144505 -160455425 - L1MA3 LINE L1 -201 6104 5615 655 259 61 33 chrX 2144686 2145486 -160454444 + L1ME1 LINE L1 2926 3896 -2250 1922 254 44 72 chrX 2145545 2146588 -160453342 + L1ME1 LINE L1 5011 6018 -148 1576 215 10 0 chrX 2146588 2146876 -160453054 - AluJo SINE Alu -21 291 1 1922 254 44 72 chrX 2146876 2146991 -160452939 + L1ME1 LINE L1 6018 6135 -31 21 36 0 0 chrX 2147891 2147919 -160452011 + AT_rich Low_complexity Low_complexity 1 28 0 204 67 0 0 chrX 2149510 2149540 -160450390 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chrX 2150138 2150165 -160449765 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chrX 2150425 2150462 -160449468 + AT_rich Low_complexity Low_complexity 1 37 0 748 167 6 6 chrX 2151285 2151459 -160448471 + CT-rich Low_complexity Low_complexity 1 174 0 502 209 12 11 chrX 2151504 2151769 -160448161 + CT-rich Low_complexity Low_complexity 1 265 0 414 280 155 0 chrX 2151804 2151995 -160447935 + MLT1F LTR MaLR 191 411 -131 4639 51 9 3 chrX 2151995 2153018 -160446912 + MER11A LTR ERVK 1 1266 0 393 277 7 15 chrX 2153019 2153156 -160446774 + MLT1F LTR MaLR 432 567 0 2264 115 0 7 chrX 2153976 2154281 -160445649 - AluSx SINE Alu -9 303 1 370 203 0 13 chrX 2154312 2154391 -160445539 + L1MB3 LINE L1 5451 5528 -646 3952 34 0 0 chrX 2154420 2154888 -160445042 - L1PA5 LINE L1 -4 6150 5683 3029 165 29 14 chrX 2154888 2155320 -160444610 + L1MB3 LINE L1 5531 5979 -204 4998 75 6 3 chrX 2155320 2155978 -160443952 - PABL_A LTR ERV1 0 660 1 3029 165 29 14 chrX 2155978 2156167 -160443763 + L1MB3 LINE L1 5979 6164 -19 240 309 0 15 chrX 2156790 2156858 -160443072 + C-rich Low_complexity Low_complexity 6 72 0 546 184 68 0 chrX 2156961 2157064 -160442866 - FLAM_C SINE Alu -33 110 1 262 307 79 10 chrX 2158031 2158132 -160441798 + LTR67 LTR ERVL 63 170 -387 296 307 22 17 chrX 2158299 2158478 -160441452 + LTR67 LTR ERVL 372 551 -6 2018 141 0 10 chrX 2158628 2158932 -160440998 - AluJb SINE Alu -11 301 1 761 161 42 7 chrX 2159442 2159585 -160440345 + FRAM SINE Alu 27 174 -2 1417 262 39 34 chrX 2159589 2160031 -160439899 + LTR8 LTR ERV1 247 690 -1 1666 183 10 10 chrX 2160041 2160330 -160439600 - AluJo SINE Alu -19 293 5 700 325 97 37 chrX 2160575 2161119 -160438811 + L1M4 LINE L1 4361 4937 -1209 2252 157 55 14 chrX 2161153 2161593 -160438337 - LTR29 LTR ERV1 -25 597 140 1158 208 58 3 chrX 2162724 2163017 -160436913 - MER33 DNA MER1_type -15 309 1 1161 209 40 8 chrX 2163176 2163429 -160436501 + LTR8 LTR ERV1 1 261 -430 302 130 0 0 chrX 2164034 2164080 -160435850 - MER20 DNA MER1_type -142 77 32 184 304 138 14 chrX 2164301 2164439 -160435491 - L3 LINE CR1 -133 1444 1290 195 129 0 0 chrX 2164901 2164932 -160434998 + (TAA)n Simple_repeat Simple_repeat 1 31 0 627 310 61 9 chrX 2164953 2165166 -160434764 - MIR SINE MIR -26 236 13 32 43 0 0 chrX 2165620 2165666 -160434264 + GC_rich Low_complexity Low_complexity 1 46 0 1716 127 0 0 chrX 2165971 2166207 -160433723 - AluSg/x SINE Alu -6 306 71 233 204 11 45 chrX 2166235 2166323 -160433607 + (CGGGG)n Simple_repeat Simple_repeat 2 86 0 * 306 246 0 62 chrX 2166319 2166498 -160433432 + (CCCCG)n Simple_repeat Simple_repeat 2 169 0 240 204 39 19 chrX 2166580 2166683 -160433247 + (CCCG)n Simple_repeat Simple_repeat 4 108 0 * 322 200 18 53 chrX 2166631 2166801 -160433129 + (CCCCG)n Simple_repeat Simple_repeat 3 166 0 2023 114 0 21 chrX 2216980 2217269 -160382661 + AluJb SINE Alu 22 304 -8 1424 191 61 50 chrX 2217401 2217762 -160382168 - MER47A DNA MER2_type -1 365 1 221 288 18 45 chrX 2217834 2217945 -160381985 + (TCCCG)n Simple_repeat Simple_repeat 3 110 0 216 274 0 0 chrX 2218025 2218076 -160381854 + CT-rich Low_complexity Low_complexity 2 52 0 1138 161 124 9 chrX 2218567 2218828 -160381102 + L1MC1 LINE L1 5727 5912 -252 21 36 0 0 chrX 2218841 2218869 -160381061 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 2218956 2218977 -160380953 + GC_rich Low_complexity Low_complexity 1 21 0 243 215 46 0 chrX 2219063 2219128 -160380802 + C-rich Low_complexity Low_complexity 2 69 0 29 0 0 0 chrX 2219161 2219190 -160380740 + GC_rich Low_complexity Low_complexity 1 29 0 618 284 51 11 chrX 2220132 2220407 -160379523 - L1PA16 LINE L1 0 6166 5881 22 0 0 0 chrX 2220758 2220780 -160379150 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 2221352 2221373 -160378557 + AT_rich Low_complexity Low_complexity 1 21 0 1343 94 0 0 chrX 2221724 2221894 -160378036 - AluSg/x SINE Alu -13 299 130 1602 153 0 4 chrX 2223141 2223416 -160376514 + L1MC1 LINE L1 6050 6323 -10 213 94 0 0 chrX 2223771 2223803 -160376127 + (TG)n Simple_repeat Simple_repeat 2 33 0 2269 92 3 0 chrX 2223884 2224177 -160375753 + AluY SINE Alu 4 297 -14 704 177 33 6 chrX 2224927 2225108 -160374822 - L1MA7 LINE L1 0 6291 6106 990 149 6 0 chrX 2225111 2225272 -160374658 + L1M2 LINE L1 5531 5692 -599 1989 167 8 24 chrX 2225320 2225341 -160374589 - MLT1A1 LTR MaLR 0 365 345 1732 201 76 92 chrX 2225341 2225904 -160374026 + MLT2B3 LTR ERVL 1 554 0 1989 167 8 24 chrX 2225904 2226253 -160373677 - MLT1A1 LTR MaLR -20 345 1 2621 106 0 8 chrX 2226535 2226902 -160373028 - THE1B LTR MaLR 0 364 1 320 266 37 0 chrX 2226938 2227047 -160372883 - MLT1I LTR MaLR 0 409 297 336 48 0 0 chrX 2227770 2227812 -160372118 + (TG)n Simple_repeat Simple_repeat 1 42 0 784 222 48 42 chrX 2228178 2228882 -160371048 + L1MA4A LINE L1 5597 6180 0 2007 111 0 42 chrX 2229344 2229650 -160370280 + AluSx SINE Alu 1 293 -19 312 27 0 0 chrX 2229683 2229720 -160370210 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chrX 2229730 2229753 -160370177 + AT_rich Low_complexity Low_complexity 1 23 0 492 194 19 9 chrX 2230119 2230227 -160369703 - L1MB7 LINE L1 -223 5961 5853 427 229 25 49 chrX 2230238 2230360 -160369570 + L1M3 LINE L1 5521 5639 -541 180 0 0 0 chrX 2230481 2230501 -160369429 + (A)n Simple_repeat Simple_repeat 1 20 0 2287 95 0 0 chrX 2230708 2231002 -160368928 - AluSc SINE Alu -15 294 1 270 226 37 0 chrX 2231198 2231474 -160368456 + (TA)n Simple_repeat Simple_repeat 1 286 0 24 0 0 0 chrX 2231474 2231498 -160368432 + AT_rich Low_complexity Low_complexity 1 24 0 578 137 0 73 chrX 2231512 2231636 -160368294 + L1MB5 LINE L1 6045 6159 -15 394 88 44 44 chrX 2231745 2231904 -160368026 + (TA)n Simple_repeat Simple_repeat 1 159 0 242 256 33 11 chrX 2231904 2231994 -160367936 + L1MC4 LINE L1 6612 6703 -1339 249 260 0 0 chrX 2232001 2232078 -160367852 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 226 361 138 26 chrX 2232288 2232593 -160367337 + L3 LINE CR1 879 1217 -360 1867 125 3 36 chrX 2233806 2234106 -160365824 - MER4B LTR ERV1 0 610 321 494 56 113 0 chrX 2234106 2234177 -160365753 + MADE1 DNA Mariner 1 79 -1 * 1710 116 96 20 chrX 2234177 2234477 -160365453 - MER4B LTR ERV1 -287 323 1 184 179 64 0 chrX 2234477 2234555 -160365375 + (TA)n Simple_repeat Simple_repeat 1 83 0 201 205 36 24 chrX 2234586 2234669 -160365261 + (TA)n Simple_repeat Simple_repeat 1 84 0 198 143 0 0 chrX 2234815 2234850 -160365080 + (CA)n Simple_repeat Simple_repeat 2 36 0 249 196 20 0 chrX 2234921 2234972 -160364958 + (CA)n Simple_repeat Simple_repeat 2 53 0 311 332 99 9 chrX 2235309 2235520 -160364410 - L1MB7 LINE L1 -2167 5641 5412 668 294 13 20 chrX 2235575 2235878 -160364052 - AluYa5 SINE Alu 0 301 1 26 0 0 0 chrX 2235949 2235975 -160363955 + AT_rich Low_complexity Low_complexity 1 26 0 248 80 23 57 chrX 2236139 2236227 -160363703 + (TTTTTG)n Simple_repeat Simple_repeat 5 89 0 742 266 27 64 chrX 2236672 2237036 -160362894 + LTR40b LTR ERVL 139 462 0 40 96 0 6 chrX 2237374 2237425 -160362505 + AT_rich Low_complexity Low_complexity 1 51 -104 2314 80 0 19 chrX 2237425 2237737 -160362193 - AluY SINE Alu -5 306 1 40 96 0 6 chrX 2237737 2237841 -160362089 + AT_rich Low_complexity Low_complexity 51 155 0 228 346 16 24 chrX 2238518 2238645 -160361285 - MIR SINE MIR -110 152 27 757 230 14 78 chrX 2238951 2239168 -160360762 + MER8 DNA MER2_type 1 203 -36 247 286 15 15 chrX 2239461 2239594 -160360336 - AluSp SINE Alu -170 133 1 478 164 125 31 chrX 2239598 2239726 -160360204 + LOR1b LTR ERV1 32 171 -290 * 978 199 91 14 chrX 2239725 2239946 -160359984 + LOR1a LTR ERV1 260 497 0 3155 102 15 0 chrX 2240171 2240632 -160359298 + L1PA10 LINE L1 5699 6166 -2 2323 145 35 55 chrX 2241026 2241168 -160358762 - MSTC LTR MaLR -2 426 283 1627 177 0 55 chrX 2241168 2241479 -160358451 - AluJo SINE Alu -18 294 1 2323 145 35 55 chrX 2241479 2241771 -160358159 - MSTC LTR MaLR -145 283 1 216 221 52 52 chrX 2242468 2242545 -160357385 - MIR SINE MIR -55 207 131 200 198 49 25 chrX 2243207 2243288 -160356642 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 32 26 0 0 chrX 2243661 2243700 -160356230 + AT_rich Low_complexity Low_complexity 1 39 0 946 137 256 64 chrX 2243738 2244051 -160355879 - MLT1A2 LTR MaLR -1 373 1 24 32 0 0 chrX 2244261 2244292 -160355638 + AT_rich Low_complexity Low_complexity 1 31 0 302 275 6 22 chrX 2245039 2245217 -160354713 + CT-rich Low_complexity Low_complexity 3 177 0 2175 128 53 0 chrX 2246023 2246670 -160353260 - L1P4 LINE L1 -551 5610 4926 1539 263 31 73 chrX 2246721 2247770 -160352160 + L1MA3 LINE L1 2057 6585 0 423 161 0 119 chrX 2247779 2247897 -160352033 + MER61E LTR ERV1 5 108 -461 293 175 143 0 chrX 2248029 2248092 -160351838 + MER51A LTR ERV1 209 280 -354 * 1382 185 83 33 chrX 2248063 2248425 -160351505 + LTR25 LTR ERV1 415 794 0 2206 271 48 16 chrX 2248444 2249202 -160350728 + L1ME LINE L1 2778 3575 -2571 1710 215 18 3 chrX 2249202 2249584 -160350346 - MLT1B LTR MaLR 0 390 3 2206 271 48 16 chrX 2249584 2249788 -160350142 + L1ME LINE L1 3575 3771 -2375 2043 246 35 42 chrX 2249789 2250509 -160349421 + L1ME LINE L1 3665 4379 -1767 240 271 14 0 chrX 2250602 2250672 -160349258 + L1ME LINE L1 5715 5785 -336 251 346 122 19 chrX 2250903 2251059 -160348871 - MIR SINE MIR -76 186 15 186 43 0 0 chrX 2251488 2251511 -160348419 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 274 184 26 0 chrX 2251824 2251900 -160348030 + CT-rich Low_complexity Low_complexity 4 81 0 2433 81 3 0 chrX 2253107 2253415 -160346515 + AluSx SINE Alu 1 309 -3 709 97 0 10 chrX 2253979 2254082 -160345848 + AluJ/FLAM SINE Alu 1 102 -210 576 189 33 14 chrX 2254376 2254514 -160345416 - MLT1C LTR MaLR -16 488 330 1210 186 10 0 chrX 2254841 2255045 -160344885 - AluJb SINE Alu -7 305 100 1278 145 10 10 chrX 2255045 2255252 -160344678 + MLT1A1 LTR MaLR 157 363 -2 279 114 0 0 chrX 2255895 2255939 -160343991 + (CA)n Simple_repeat Simple_repeat 1 44 0 3159 154 11 12 chrX 2256607 2257167 -160342763 + L1MA8 LINE L1 5676 6234 -57 249 88 0 53 chrX 2257403 2257460 -160342470 + L1MA9 LINE L1 6237 6290 -1 210 37 0 0 chrX 2257649 2257676 -160342254 + (TG)n Simple_repeat Simple_repeat 1 27 0 1428 114 8 28 chrX 2259195 2259360 -160340570 - L1MA2 LINE L1 0 6304 6144 2089 134 10 0 chrX 2259360 2259666 -160340264 - AluSx SINE Alu -3 309 1 1428 114 8 28 chrX 2259666 2259754 -160340176 - L1MA2 LINE L1 -160 6144 6056 209 200 0 0 chrX 2260051 2260091 -160339839 + A-rich Low_complexity Low_complexity 2 41 0 2710 97 17 12 chrX 2260671 2261074 -160338856 - L1PB1 LINE L1 -1 6150 5746 3030 95 32 2 chrX 2261468 2261909 -160338021 + L1PA12 LINE L1 5714 6167 -1 260 0 0 54 chrX 2262234 2262271 -160337659 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2149 119 3 0 chrX 2262278 2262572 -160337358 + AluSg SINE Alu 2 296 -14 1379 80 80 5 chrX 2263989 2264213 -160335717 - L1MA2 LINE L1 -236 6068 5828 537 125 7 145 chrX 2264212 2264364 -160335566 + L1MA2 LINE L1 6169 6299 -5 * 239 342 101 25 chrX 2264635 2264793 -160335137 + MIR SINE MIR 20 189 -73 1608 225 25 95 chrX 2265027 2265443 -160334487 - L1ME1 LINE L1 -163 6003 5662 4108 150 95 8 chrX 2265443 2266203 -160333727 + LTR1B LTR ERV1 1 826 0 1608 225 25 95 chrX 2266203 2266546 -160333384 - L1ME1 LINE L1 -504 5662 5297 1082 270 31 24 chrX 2266614 2267029 -160332901 - L1MD3 LINE L1 -59 7936 7519 540 116 49 6 chrX 2267034 2267198 -160332732 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 295 154 31 74 chrX 2267201 2267363 -160332567 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 * 303 174 72 14 chrX 2267261 2267399 -160332531 + (TA)n Simple_repeat Simple_repeat 2 147 0 411 208 25 117 chrX 2267408 2267476 -160332454 - Tigger2 DNA MER2_type 0 2718 2664 2058 118 3 3 chrX 2267476 2267763 -160332167 + AluSx SINE Alu 1 287 -25 411 208 25 117 chrX 2267763 2267814 -160332116 - Tigger2 DNA MER2_type -54 2664 2610 332 172 0 0 chrX 2267814 2267872 -160332058 - Tigger2 DNA MER2_type -2660 58 1 720 283 65 47 chrX 2268047 2268492 -160331438 - LTR40c LTR ERVL -6 459 7 259 307 78 52 chrX 2268528 2268820 -160331110 - L1MCc LINE L1 -5970 453 145 1617 200 40 115 chrX 2268820 2269089 -160330841 - MLT2B3 LTR ERVL 0 554 352 2060 132 0 21 chrX 2269089 2269415 -160330515 + AluSx SINE Alu 1 320 0 1617 200 40 115 chrX 2269415 2269743 -160330187 - MLT2B3 LTR ERVL -202 352 1 259 307 78 52 chrX 2269743 2269874 -160330056 - L1MCc LINE L1 -6278 145 19 490 301 43 12 chrX 2271216 2271379 -160328551 + MER5B DNA MER1_type 6 173 -5 2193 75 7 14 chrX 2271601 2271894 -160328036 - AluSc SINE Alu -18 291 1 2295 96 65 63 chrX 2272106 2272553 -160327377 + LTR7 LTR ERV1 1 448 -2 18262 96 13 37 chrX 2272555 2275613 -160324317 + HERVH LTR ERV1 1 2987 -4726 817 149 20 0 chrX 2275607 2275755 -160324175 + HERVH LTR ERV1 3140 3290 -4423 * 3076 109 20 6 chrX 2275745 2276240 -160323690 + HERVH LTR ERV1 3492 3993 -3720 3972 149 1 3 chrX 2276242 2276905 -160323025 + HERVH LTR ERV1 4488 5149 -2564 1326 104 38 0 chrX 2276906 2277118 -160322812 + HERVH LTR ERV1 5600 5819 -1894 2688 64 5 13 chrX 2277118 2277511 -160322419 + HERVH LTR ERV1 7324 7713 0 2043 116 84 64 chrX 2277511 2277950 -160321980 + LTR7 LTR ERV1 1 448 -2 5417 68 4 1 chrX 2278155 2278844 -160321086 - LTR8 LTR ERV1 0 691 1 1826 182 17 63 chrX 2278972 2279100 -160320830 + L1MA7 LINE L1 5840 5972 -319 2421 66 3 0 chrX 2279100 2279401 -160320529 + AluY SINE Alu 1 302 -9 2458 191 130 20 chrX 2279402 2280056 -160319874 - LTR8A LTR ERV1 0 727 2 1826 182 17 63 chrX 2280056 2280398 -160319532 + L1MA7 LINE L1 5971 6290 -1 34 55 0 0 chrX 2280398 2280453 -160319477 + AT_rich Low_complexity Low_complexity 1 55 0 4064 71 2 42 chrX 2280490 2281067 -160318863 - MER41A LTR ERV1 0 554 1 1151 214 105 3 chrX 2281790 2282075 -160317855 + MER7A DNA MER2_type 35 346 0 503 196 10 0 chrX 2283315 2283412 -160316518 - MER90 LTR ERV1 0 575 478 670 219 38 65 chrX 2283412 2283704 -160316226 + MLT1D LTR MaLR 1 284 -221 293 168 44 7 chrX 2283790 2283927 -160316003 + (TA)n Simple_repeat Simple_repeat 2 143 0 249 205 24 0 chrX 2283970 2284097 -160315833 + (TA)n Simple_repeat Simple_repeat 2 131 0 558 236 7 0 chrX 2284137 2284281 -160315649 - L1MB4 LINE L1 -2 6178 6034 232 96 58 0 chrX 2284285 2284337 -160315593 - L1MB4 LINE L1 -163 6011 5957 1883 119 0 61 chrX 2284499 2284811 -160315119 + AluSx SINE Alu 1 293 -19 312 27 0 0 chrX 2284843 2284880 -160315050 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chrX 2284890 2284913 -160315017 + AT_rich Low_complexity Low_complexity 1 23 0 461 194 19 9 chrX 2285279 2285387 -160314543 - L1MB4 LINE L1 -223 5961 5853 390 239 0 46 chrX 2285398 2285507 -160314423 + L1M3 LINE L1 5521 5624 -556 180 0 0 0 chrX 2285641 2285661 -160314269 + (A)n Simple_repeat Simple_repeat 1 20 0 2310 95 0 0 chrX 2285869 2286164 -160313766 - AluSc SINE Alu -14 295 1 270 226 37 0 chrX 2286360 2286636 -160313294 + (TA)n Simple_repeat Simple_repeat 1 286 0 24 0 0 0 chrX 2286636 2286660 -160313270 + AT_rich Low_complexity Low_complexity 1 24 0 608 193 0 0 chrX 2286674 2286809 -160313121 + L1MB4 LINE L1 6044 6178 -2 382 94 50 38 chrX 2286907 2287066 -160312864 + (TA)n Simple_repeat Simple_repeat 2 162 0 350 256 33 11 chrX 2287066 2287156 -160312774 + L1MC4 LINE L1 6612 6703 -1339 249 260 0 0 chrX 2287163 2287240 -160312690 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 227 361 138 26 chrX 2287450 2287755 -160312175 + L3 LINE CR1 879 1217 -360 1794 180 41 22 chrX 2288804 2289171 -160310759 - MLT1A2 LTR MaLR 0 374 1 431 343 155 20 chrX 2290012 2290523 -160309407 - L2 LINE L2 -2318 996 417 1937 146 13 10 chrX 2290998 2291300 -160308630 + AluSx SINE Alu 1 303 -9 920 203 0 0 chrX 2291301 2291459 -160308471 + AluJo/FRAM SINE Alu 136 293 -19 317 171 0 14 chrX 2291519 2291589 -160308341 + (TA)n Simple_repeat Simple_repeat 1 69 0 450 287 0 0 chrX 2291741 2291849 -160308081 + Tigger3(Golem) DNA MER2_type 2921 3028 -1 1967 197 10 3 chrX 2291860 2292245 -160307685 - MER47B DNA MER2_type 0 418 31 1461 169 0 16 chrX 2292409 2292663 -160307267 + AluSx SINE Alu 63 312 0 197 159 23 0 chrX 2292664 2292708 -160307222 + (TA)n Simple_repeat Simple_repeat 2 46 0 211 196 18 27 chrX 2292853 2292965 -160306965 + (TA)n Simple_repeat Simple_repeat 1 111 0 267 103 0 0 chrX 2292965 2293004 -160306926 + (GA)n Simple_repeat Simple_repeat 2 40 0 1777 162 4 0 chrX 2294567 2294833 -160305097 + AluJb SINE Alu 35 301 -11 683 134 0 0 chrX 2295328 2295440 -160304490 + AluSg/x SINE Alu 190 301 -9 1443 261 42 18 chrX 2295579 2296127 -160303803 + L1ME1 LINE L1 5601 6161 -5 901 70 25 13 chrX 2296240 2296397 -160303533 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 439 215 42 3 chrX 2296413 2296725 -160303205 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 781 144 26 17 chrX 2296749 2297093 -160302837 + (TCTA)n Simple_repeat Simple_repeat 1 347 0 206 291 23 58 chrX 2297469 2297526 -160302404 - MIR SINE MIR -114 148 93 2373 74 0 3 chrX 2297526 2297823 -160302107 + AluSg SINE Alu 1 296 -14 206 291 23 58 chrX 2297823 2297851 -160302079 - MIR SINE MIR -169 93 66 681 177 33 6 chrX 2298573 2298754 -160301176 - L1MA7 LINE L1 0 6291 6106 939 149 6 0 chrX 2298757 2298918 -160301012 + L1M2 LINE L1 5531 5692 -599 1837 170 8 24 chrX 2298966 2298987 -160300943 - MLT1A1 LTR MaLR 0 365 345 1718 201 78 91 chrX 2298987 2299548 -160300382 + MLT2B3 LTR ERVL 1 554 0 1837 170 8 24 chrX 2299548 2299897 -160300033 - MLT1A1 LTR MaLR -20 345 1 2629 106 0 8 chrX 2300179 2300546 -160299384 - THE1B LTR MaLR 0 364 1 290 266 37 0 chrX 2300582 2300691 -160299239 - MLT1I LTR MaLR 0 409 297 336 48 0 0 chrX 2301414 2301456 -160298474 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 164 0 0 chrX 2301723 2301784 -160298146 - MADE1 DNA Mariner -2 78 18 296 283 5 38 chrX 2301788 2301972 -160297958 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 462 269 0 6 chrX 2301881 2302052 -160297878 + (TA)n Simple_repeat Simple_repeat 1 170 0 489 258 10 3 chrX 2302065 2302365 -160297565 + (TA)n Simple_repeat Simple_repeat 1 302 0 382 247 0 48 chrX 2302353 2302539 -160297391 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 * 466 284 6 0 chrX 2302548 2302717 -160297213 + (TA)n Simple_repeat Simple_repeat 1 170 0 1469 200 3 77 chrX 2302721 2303096 -160296834 - MER7A DNA MER2_type 0 346 2 2133 159 77 12 chrX 2303143 2303545 -160296385 + MSTA LTR MaLR 1 428 0 432 158 0 0 chrX 2304191 2304267 -160295663 + CT-rich Low_complexity Low_complexity 3 78 0 1161 82 6 16 chrX 2304269 2304451 -160295479 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2017 115 11 4 chrX 2304451 2304730 -160295200 - AluSq SINE Alu -32 281 1 186 224 0 0 chrX 2304754 2304803 -160295127 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 71 24 0 chrX 2305049 2305091 -160294839 + MADE1 DNA Mariner 1 43 -37 1528 194 61 0 chrX 2305104 2305397 -160294533 - AluSx SINE Alu -1 311 1 1172 197 5 0 chrX 2305835 2306053 -160293877 - L1PA15 LINE L1 -5 6160 5942 234 0 0 0 chrX 2307939 2307965 -160291965 + (TA)n Simple_repeat Simple_repeat 2 27 0 356 129 65 0 chrX 2308246 2308308 -160291622 - AluJ/FLAM SINE Alu -229 73 8 1895 143 16 0 chrX 2308308 2308615 -160291315 + L1PA16 LINE L1 5855 6166 0 632 163 10 0 chrX 2309690 2309788 -160290142 - FLAM_C SINE Alu -32 111 13 1597 153 0 4 chrX 2310511 2310786 -160289144 + L1MC1 LINE L1 6050 6323 -10 213 94 0 0 chrX 2311140 2311172 -160288758 + (TG)n Simple_repeat Simple_repeat 2 33 0 2464 74 3 0 chrX 2311250 2311560 -160288370 + AluY SINE Alu 1 361 0 258 120 40 0 chrX 2311560 2311610 -160288320 + GA-rich Low_complexity Low_complexity 4 180 0 1870 183 99 2 chrX 2312266 2312660 -160287270 + MSTB1 LTR MaLR 1 432 0 217 265 53 98 chrX 2312773 2312905 -160287025 - MER5A DNA MER1_type -22 167 42 194 358 40 61 chrX 2312783 2312931 -160286999 + MER5A DNA MER1_type 44 188 -1 * 1907 178 30 0 chrX 2313650 2314048 -160285882 + L1MA8 LINE L1 5882 6291 0 28 29 0 0 chrX 2314152 2314187 -160285743 + AT_rich Low_complexity Low_complexity 1 35 0 1220 151 165 62 chrX 2314491 2314763 -160285167 + AluJb SINE Alu 1 300 -2 1190 188 9 75 chrX 2315322 2315372 -160284558 - MLT1A1 LTR MaLR 0 365 313 1904 169 50 14 chrX 2315372 2315734 -160284196 + THE1C LTR MaLR 1 375 0 1190 188 9 75 chrX 2315734 2316002 -160283928 - MLT1A1 LTR MaLR -52 313 68 1603 185 15 0 chrX 2316003 2316333 -160283597 - MER47A DNA MER2_type -1 365 31 426 118 0 15 chrX 2316347 2316415 -160283515 - MLT1A1 LTR MaLR -304 70 4 417 277 15 34 chrX 2316733 2316939 -160282991 - L1ME LINE L1 -454 5777 5576 1626 178 0 44 chrX 2317041 2317362 -160282568 + AluJo SINE Alu 1 307 -5 385 322 61 20 chrX 2317404 2317699 -160282231 - L1ME LINE L1 -2133 4082 3776 1166 78 0 0 chrX 2317702 2317844 -160282086 - AluSp/q SINE Alu -16 297 156 210 71 0 0 chrX 2317950 2317978 -160281952 + (T)n Simple_repeat Simple_repeat 1 28 0 457 280 63 68 chrX 2318166 2318447 -160281483 - L1ME LINE L1 -2806 3409 3154 1743 198 0 3 chrX 2318447 2318750 -160281180 - AluJb SINE Alu -10 302 1 457 280 63 68 chrX 2318750 2319028 -160280902 - L1ME LINE L1 -3061 3154 2876 693 259 94 27 chrX 2319588 2319962 -160279968 + MER50 LTR ERV1 10 408 -326 1583 214 0 10 chrX 2320584 2320893 -160279037 + AluJo SINE Alu 1 306 -6 740 161 0 23 chrX 2321762 2321892 -160278038 + FRAM SINE Alu 47 173 -3 444 152 25 0 chrX 2321897 2321976 -160277954 + AluJo SINE Alu 56 136 -176 204 143 0 0 chrX 2325228 2325270 -160274660 + (TA)n Simple_repeat Simple_repeat 2 43 0 381 192 58 17 chrX 2325315 2325487 -160274443 + (TA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 2326396 2326418 -160273512 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chrX 2326546 2326588 -160273342 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrX 2326645 2326666 -160273264 + AT_rich Low_complexity Low_complexity 1 21 0 2162 258 50 83 chrX 2326740 2328975 -160270955 - L1MEc LINE L1 -3379 2836 718 919 270 39 32 chrX 2328982 2329040 -160270890 + L1M4 LINE L1 2692 2748 -3398 1991 142 53 11 chrX 2329040 2329400 -160270530 - THE1C LTR MaLR 0 375 1 919 270 39 32 chrX 2329400 2329807 -160270123 + L1M4 LINE L1 2748 3160 -2986 3254 104 16 22 chrX 2330202 2330712 -160269218 + MER84 LTR ERV1 1 507 0 2237 107 0 7 chrX 2331008 2331318 -160268612 + AluSc SINE Alu 1 308 -1 202 325 12 0 chrX 2331378 2331461 -160268469 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 * 207 232 0 18 chrX 2331406 2331462 -160268468 + (TA)n Simple_repeat Simple_repeat 1 55 0 230 200 24 24 chrX 2331463 2331548 -160268382 - L1MC4 LINE L1 -1339 6703 6619 299 269 11 0 chrX 2332764 2332857 -160267073 + (TG)n Simple_repeat Simple_repeat 1 94 0 2581 162 44 29 chrX 2332886 2333473 -160266457 + LTR8A LTR ERV1 11 606 -121 3638 119 22 10 chrX 2333473 2334071 -160265859 - MER41B LTR ERV1 0 635 31 418 198 139 30 chrX 2334071 2334172 -160265758 + AluJb SINE Alu 177 288 -24 276 75 19 0 chrX 2334297 2334350 -160265580 - L1MB3 LINE L1 -2 6181 6128 2068 139 3 3 chrX 2334382 2334692 -160265238 - AluSx SINE Alu -2 310 1 1117 174 34 65 chrX 2334692 2334986 -160264944 - L1MB3 LINE L1 -41 6142 5858 1062 231 22 19 chrX 2335176 2335492 -160264438 - MLT1C LTR MaLR -2 465 149 2528 80 3 0 chrX 2335492 2335841 -160264089 - L1PB1 LINE L1 -25 6126 5777 805 215 0 0 chrX 2335841 2336013 -160263917 - MLT1C LTR MaLR -293 174 3 1304 148 65 0 chrX 2336096 2336312 -160263618 - MER30 DNA MER1_type 0 230 1 223 276 9 95 chrX 2336686 2336802 -160263128 - MIR SINE MIR -70 192 87 2203 128 0 0 chrX 2337028 2337334 -160262596 - AluSx SINE Alu -6 306 1 362 205 0 0 chrX 2337796 2337879 -160262051 - L1MA4A LINE L1 -22 6281 6199 2091 210 51 30 chrX 2337928 2338500 -160261430 - L1MB4 LINE L1 0 6180 5597 1828 192 0 3 chrX 2338500 2338812 -160261118 - AluJb SINE Alu 0 312 2 2229 93 17 0 chrX 2338877 2339168 -160260762 + AluSx SINE Alu 1 296 -16 563 227 13 18 chrX 2339952 2340493 -160259437 + CT-rich Low_complexity Low_complexity 1 538 0 25 0 0 0 chrX 2341995 2342020 -160257910 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chrX 2342353 2342385 -160257545 + (CA)n Simple_repeat Simple_repeat 1 32 0 347 189 8 28 chrX 2342710 2342848 -160257082 + CT-rich Low_complexity Low_complexity 1 135 0 1625 139 8 11 chrX 2343013 2343279 -160256651 - AluJb SINE Alu -20 292 28 32 0 0 0 chrX 2343282 2343314 -160256616 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chrX 2343783 2343813 -160256117 + AT_rich Low_complexity Low_complexity 1 30 0 201 132 0 0 chrX 2343837 2343875 -160256055 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1910 118 59 0 chrX 2344358 2344689 -160255241 + AluSx SINE Alu 1 347 0 322 371 40 7 chrX 2345242 2345393 -160254537 - MIR SINE MIR -12 250 95 1735 249 56 6 chrX 2345769 2346250 -160253680 + MLT1D LTR MaLR 1 505 0 1634 196 3 10 chrX 2346649 2346709 -160253221 - AluJo SINE Alu 0 593 534 1185 0 22 39 chrX 2346709 2346891 -160253039 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1634 196 3 10 chrX 2346891 2347244 -160252686 - AluJo SINE Alu -59 534 1 490 293 21 21 chrX 2347330 2347518 -160252412 - MER5A DNA MER1_type 0 189 2 616 202 6 52 chrX 2347602 2347775 -160252155 + MER20 DNA MER1_type 30 194 -25 441 107 13 0 chrX 2349647 2349722 -160250208 + L1PB3 LINE L1 6070 6145 -9 570 29 0 0 chrX 2349722 2349790 -160250140 + (TA)n Simple_repeat Simple_repeat 2 69 0 888 136 17 11 chrX 2353027 2353203 -160246727 + CT-rich Low_complexity Low_complexity 3 179 0 931 144 6 6 chrX 2353249 2353422 -160246508 + CT-rich Low_complexity Low_complexity 4 176 0 1570 181 0 24 chrX 2353431 2353718 -160246212 - AluJo SINE Alu -32 280 1 672 219 45 60 chrX 2353721 2354081 -160245849 + LTR52 LTR ERVL 17 405 -16 233 332 63 35 chrX 2354119 2354405 -160245525 - MLT1L LTR MaLR -321 294 1 1943 140 3 7 chrX 2355666 2355982 -160243948 - AluSx SINE Alu 0 315 1 22 56 0 0 chrX 2356923 2356959 -160242971 + AT_rich Low_complexity Low_complexity 1 36 0 666 171 34 11 chrX 2357588 2357764 -160242166 + GA-rich Low_complexity Low_complexity 1 180 0 254 263 0 0 chrX 2357765 2357822 -160242108 + A-rich Low_complexity Low_complexity 2 58 0 1631 186 13 3 chrX 2357948 2358254 -160241676 - AluJb SINE Alu -3 309 1 500 204 0 0 chrX 2358471 2358601 -160241329 - FRAM SINE Alu 0 185 56 235 272 12 12 chrX 2358683 2358764 -160241166 + MIR3 SINE MIR 125 205 -3 22 35 0 0 chrX 2360902 2360931 -160238999 + AT_rich Low_complexity Low_complexity 1 29 0 191 358 37 9 chrX 2361691 2361800 -160238130 - MIR SINE MIR -62 146 35 1976 132 46 32 chrX 2361804 2362174 -160237756 - THE1C LTR MaLR 0 375 1 594 156 13 18 chrX 2362201 2362328 -160237602 + L1P4 LINE L1 5668 5792 -373 450 207 46 63 chrX 2362445 2362619 -160237311 - THE1C LTR MaLR -185 190 20 261 0 0 0 chrX 2362989 2363018 -160236912 + (T)n Simple_repeat Simple_repeat 1 29 0 1509 169 42 42 chrX 2363032 2363176 -160236754 + MLT1B LTR MaLR 1 144 -246 2524 118 3 3 chrX 2363176 2363539 -160236391 - THE1B LTR MaLR 0 364 2 1509 169 42 42 chrX 2363539 2363731 -160236199 + MLT1B LTR MaLR 143 337 -53 14576 158 8 6 chrX 2363746 2366365 -160233565 - L1P3 LINE L1 -2574 5010 2386 7653 143 15 7 chrX 2366400 2367599 -160232331 - L1P3 LINE L1 -4734 2264 991 2132 120 9 125 chrX 2367599 2367878 -160232052 + Tigger7 DNA MER2_type 2191 2400 -187 2629 113 0 0 chrX 2367878 2368240 -160231690 - THE1B LTR MaLR 0 364 3 2132 120 9 125 chrX 2368240 2368409 -160231521 + Tigger7 DNA MER2_type 2400 2587 0 1159 250 68 41 chrX 2368435 2368803 -160231127 + MLT1E3 LTR MaLR 236 613 -11 1397 185 24 20 chrX 2368810 2369107 -160230823 + LTR29 LTR ERV1 321 618 -4 404 344 39 18 chrX 2369258 2369543 -160230387 + L2 LINE L2 2189 2479 -835 2434 74 0 10 chrX 2369601 2369910 -160230020 + AluSq SINE Alu 1 306 -7 1487 174 79 8 chrX 2370197 2370462 -160229468 + AluJb SINE Alu 13 296 -16 1007 188 0 0 chrX 2370462 2370632 -160229298 + AluJo/FRAM SINE Alu 134 303 -9 773 186 118 10 chrX 2370861 2371065 -160228865 - AluJo SINE Alu 0 312 87 209 299 112 30 chrX 2371073 2371207 -160228723 + L2 LINE L2 1955 2099 -1215 5178 168 18 8 chrX 2372097 2372986 -160226944 - MER4D LTR ERV1 -5 898 1 181 333 48 0 chrX 2373326 2373410 -160226520 + MIR SINE MIR 158 245 -17 195 42 0 0 chrX 2373459 2373483 -160226447 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1529 152 45 26 chrX 2373486 2373755 -160226175 - AluJo SINE Alu -30 282 9 195 271 21 0 chrX 2373960 2374008 -160225922 - MIR SINE MIR -86 122 74 22 35 0 0 chrX 2374109 2374138 -160225792 + AT_rich Low_complexity Low_complexity 1 29 0 191 321 18 0 chrX 2374258 2374314 -160225616 + L2 LINE L2 3184 3240 -32 416 193 0 50 chrX 2374354 2374535 -160225395 + (TA)n Simple_repeat Simple_repeat 1 172 0 594 133 6 60 chrX 2374551 2374883 -160225047 + (TA)n Simple_repeat Simple_repeat 1 313 0 654 103 5 60 chrX 2374935 2375119 -160224811 + (TA)n Simple_repeat Simple_repeat 1 174 0 302 275 6 22 chrX 2375412 2375590 -160224340 + GA-rich Low_complexity Low_complexity 3 177 0 1178 197 5 0 chrX 2377334 2377552 -160222378 - L1PA15 LINE L1 -5 6160 5942 576 189 33 14 chrX 2378295 2378433 -160221497 - MLT1C LTR MaLR -16 488 330 29 0 0 0 chrX 2379328 2379357 -160220573 + AT_rich Low_complexity Low_complexity 1 29 0 887 182 6 50 chrX 2379375 2379556 -160220374 - AluJb SINE Alu -14 298 126 1075 160 6 6 chrX 2380399 2380580 -160219350 + AluJb SINE Alu 132 312 0 2709 99 3 3 chrX 2381212 2381587 -160218343 + THE1C LTR MaLR 1 375 0 21 36 0 0 chrX 2381590 2381618 -160218312 + AT_rich Low_complexity Low_complexity 1 28 0 237 180 0 0 chrX 2381799 2381849 -160218081 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 2196 97 7 10 chrX 2381927 2382242 -160217688 + AluY SINE Alu 1 314 0 21 0 0 0 chrX 2382256 2382277 -160217653 + AT_rich Low_complexity Low_complexity 1 21 0 1227 84 0 0 chrX 2382596 2382751 -160217179 + THE1B LTR MaLR 210 364 0 257 292 9 0 chrX 2382922 2383035 -160216895 - L1M4 LINE L1 -3178 2968 2855 4808 92 5 9 chrX 2385103 2385773 -160214157 - PABL_B LTR ERV1 0 667 1 2295 220 24 67 chrX 2386368 2386563 -160213367 - L1MA10 LINE L1 -1 6333 6131 219 69 0 0 chrX 2386563 2386592 -160213338 + (TG)n Simple_repeat Simple_repeat 2 30 0 2295 220 24 67 chrX 2386592 2387065 -160212865 - L1MA10 LINE L1 -203 6131 5694 2305 94 40 37 chrX 2387065 2387439 -160212491 - THE1C LTR MaLR 0 375 1 2295 220 24 67 chrX 2387439 2387473 -160212457 - L1MA10 LINE L1 -640 5694 5660 213 39 0 0 chrX 2388214 2388240 -160211690 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 239 245 11 0 chrX 2388290 2388384 -160211546 + (TA)n Simple_repeat Simple_repeat 2 96 0 202 200 0 0 chrX 2388396 2388431 -160211499 + (CA)n Simple_repeat Simple_repeat 2 36 0 297 276 13 0 chrX 2389675 2389751 -160210179 + GA-rich Low_complexity Low_complexity 2 78 0 4699 161 55 30 chrX 2391520 2391700 -160208230 + L1MB3 LINE L1 5004 5178 -1005 1953 142 4 0 chrX 2391700 2391981 -160207949 + AluSq SINE Alu 1 282 -31 201 74 0 0 chrX 2391984 2392011 -160207919 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4699 161 55 30 chrX 2392011 2392606 -160207324 + L1MB3 LINE L1 5179 5808 -375 1938 137 64 17 chrX 2392606 2392964 -160206966 + THE1C LTR MaLR 1 375 0 4699 161 55 30 chrX 2392964 2393348 -160206582 + L1MB3 LINE L1 5808 6181 -2 273 261 23 0 chrX 2393454 2393542 -160206388 - L1MA10 LINE L1 -3 6331 6242 21 0 0 0 chrX 2393542 2393563 -160206367 + AT_rich Low_complexity Low_complexity 1 21 0 430 252 18 0 chrX 2393751 2393862 -160206068 - L1M4 LINE L1 -2506 3640 3528 332 326 22 27 chrX 2393911 2394095 -160205835 - L1M4 LINE L1 -2627 3519 3337 1971 199 33 25 chrX 2394134 2394681 -160205249 - MLT2A2 LTR ERVL 0 554 1 790 269 9 9 chrX 2394681 2394896 -160205034 + MLT2D LTR ERVL 143 357 -57 515 190 41 19 chrX 2394898 2395215 -160204715 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 237 124 56 11 chrX 2395228 2395317 -160204613 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 253 80 20 20 chrX 2395364 2395414 -160204516 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 250 163 0 0 chrX 2395419 2395462 -160204468 + MLT2D LTR ERVL 420 462 -2 203 281 18 0 chrX 2396242 2396299 -160203631 + CT-rich Low_complexity Low_complexity 2 59 0 206 365 78 0 chrX 2396311 2396426 -160203504 - L2 LINE L2 -1 3271 3148 1777 162 42 48 chrX 2397467 2397844 -160202086 + THE1C LTR MaLR 1 375 0 925 200 47 5 chrX 2397969 2398347 -160201583 + L1MB3 LINE L1 5574 6081 -102 1940 215 149 33 chrX 2398349 2399022 -160200908 + LTR1B LTR ERV1 1 955 -65 345 104 0 125 chrX 2399084 2399142 -160200788 + L1MB4 LINE L1 6094 6137 -43 2413 85 0 0 chrX 2399142 2399437 -160200493 + AluY SINE Alu 1 295 -16 345 104 0 125 chrX 2399437 2399474 -160200456 + L1MB4 LINE L1 6137 6177 -3 1168 96 0 34 chrX 2399855 2400032 -160199898 - L1PA11 LINE L1 0 6174 6004 1940 137 0 29 chrX 2400062 2400368 -160199562 - AluSg SINE Alu -13 297 1 1466 176 36 102 chrX 2400875 2401266 -160198664 - MLT1A1 LTR MaLR 0 365 1 2032 149 0 3 chrX 2401353 2401648 -160198282 + AluSx SINE Alu 1 294 -18 554 129 43 0 chrX 2402768 2402861 -160197069 - L1PB1 LINE L1 -1 6150 6054 26 64 0 0 chrX 2402896 2402943 -160196987 + AT_rich Low_complexity Low_complexity 1 47 0 350 168 57 3 chrX 2402959 2403324 -160196606 + (TA)n Simple_repeat Simple_repeat 1 384 0 273 184 57 0 chrX 2403344 2403502 -160196428 + (TA)n Simple_repeat Simple_repeat 2 168 0 205 218 18 0 chrX 2403526 2403581 -160196349 + (TTATA)n Simple_repeat Simple_repeat 3 58 0 245 98 24 0 chrX 2403597 2403638 -160196292 + (TG)n Simple_repeat Simple_repeat 1 42 0 2776 168 62 30 chrX 2405303 2405813 -160194117 + L1MC1 LINE L1 5727 6254 -79 1743 157 6 39 chrX 2405813 2406125 -160193805 + AluJb SINE Alu 1 302 -10 2776 168 62 30 chrX 2406125 2406188 -160193742 + L1MC1 LINE L1 6254 6314 -19 2258 82 4 0 chrX 2406452 2406795 -160193135 + AluSg SINE Alu 1 344 0 3245 89 22 26 chrX 2408801 2409306 -160190624 - L1PA13 LINE L1 -5 6158 5656 234 0 0 0 chrX 2409933 2409959 -160189971 + (A)n Simple_repeat Simple_repeat 1 26 0 34 65 0 0 chrX 2410568 2410630 -160189300 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chrX 2410722 2410750 -160189180 + AT_rich Low_complexity Low_complexity 1 28 0 1094 153 11 11 chrX 2410929 2411106 -160188824 - AluJb SINE Alu -2 310 134 408 40 0 0 chrX 2411106 2411156 -160188774 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 2338 64 0 3 chrX 2411156 2411438 -160188492 - AluY SINE Alu -30 281 1 1296 164 102 79 chrX 2411452 2411757 -160188173 - AluJo SINE Alu 0 312 1 28 48 0 0 chrX 2412058 2412100 -160187830 + GC_rich Low_complexity Low_complexity 1 42 0 27 35 0 0 chrX 2412168 2412197 -160187733 + GC_rich Low_complexity Low_complexity 1 29 0 53 40 0 0 chrX 2412298 2412372 -160187558 + GC_rich Low_complexity Low_complexity 1 74 0 255 319 28 14 chrX 2412615 2412759 -160187171 - MIR SINE MIR -12 250 105 1196 137 60 17 chrX 2413724 2413957 -160185973 + MER39B LTR ERV1 411 653 0 3274 125 4 8 chrX 2414210 2414705 -160185225 + MER1A DNA MER1_type 37 529 0 231 286 32 0 chrX 2414712 2414775 -160185155 + L2 LINE L2 3243 3307 -6 722 206 16 0 chrX 2415080 2415226 -160184704 + FLAM_C SINE Alu 1 148 0 223 203 0 94 chrX 2415605 2415669 -160184261 - L3 LINE CR1 -754 823 766 806 150 6 17 chrX 2415784 2415964 -160183966 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 225 175 0 0 chrX 2415967 2416007 -160183923 + CT-rich Low_complexity Low_complexity 1 40 0 1999 151 66 45 chrX 2416017 2416441 -160183489 + Tigger2a DNA MER2_type 1 433 -1 294 29 0 0 chrX 2416442 2416477 -160183453 + (TG)n Simple_repeat Simple_repeat 2 36 0 376 341 54 47 chrX 2416525 2416801 -160183129 - L3 LINE CR1 -934 643 366 2208 107 3 19 chrX 2417732 2418040 -160181890 + AluSx SINE Alu 1 303 -9 2417 64 3 7 chrX 2418044 2418342 -160181588 + AluSp SINE Alu 1 297 -16 416 211 0 0 chrX 2419032 2419108 -160180822 + FLAM_A SINE Alu 46 121 -21 1590 185 7 26 chrX 2419115 2419417 -160180513 + AluJo SINE Alu 1 296 -16 2128 129 3 3 chrX 2419538 2419833 -160180097 + AluSx SINE Alu 1 295 -17 357 24 0 0 chrX 2419833 2419875 -160180055 + (TA)n Simple_repeat Simple_repeat 2 43 0 1756 189 30 30 chrX 2420091 2420462 -160179468 - MLT1A2 LTR MaLR 0 374 4 949 229 122 61 chrX 2420542 2421205 -160178725 - LTR27 LTR ERV1 0 636 3 351 147 93 0 chrX 2421961 2422036 -160177894 + MLT1I LTR MaLR 321 402 -7 1188 198 28 4 chrX 2423358 2423606 -160176324 + L1MB5 LINE L1 5913 6166 -8 1193 204 0 9 chrX 2424107 2424323 -160175607 + AluJo SINE Alu 1 214 -98 2189 188 19 24 chrX 2425046 2425509 -160174421 - MLT1C LTR MaLR -1 466 6 191 286 32 95 chrX 2425717 2425843 -160174087 - L2 LINE L2 -190 3082 2965 1869 93 53 50 chrX 2426774 2427097 -160172833 + THE1B LTR MaLR 41 364 0 3538 42 0 0 chrX 2427512 2427937 -160171993 + L1PA6 LINE L1 5729 6153 -1 635 303 40 14 chrX 2427943 2428293 -160171637 + L1MC3 LINE L1 6808 7166 -619 508 295 70 29 chrX 2428562 2428979 -160170951 + L1MC/D LINE L1 5284 5717 -2278 609 216 47 7 chrX 2429349 2429497 -160170433 + MER47A DNA MER2_type 1 154 -212 1662 121 24 34 chrX 2429597 2429810 -160170120 + LTR8A LTR ERV1 43 254 -473 2806 81 3 16 chrX 2429810 2430179 -160169751 + THE1B LTR MaLR 1 364 0 1662 121 24 34 chrX 2430179 2430262 -160169668 + LTR8A LTR ERV1 254 336 -391 2700 142 76 6 chrX 2430262 2430735 -160169195 - MER84 LTR ERV1 0 507 2 323 183 28 14 chrX 2430735 2430806 -160169124 - MER84 LTR ERVI -433 74 3 1241 160 106 83 chrX 2430808 2431195 -160168735 + LTR8A LTR ERV1 332 727 0 3056 180 56 3 chrX 2431421 2432011 -160167919 - LTR26E LTR ERV1 0 622 2 1268 179 112 166 chrX 2432377 2432977 -160166953 + LTR8A LTR ERV1 1 551 -176 3206 123 16 12 chrX 2432977 2433488 -160166442 - MER75 DNA T2_type 0 514 2 1268 179 112 166 chrX 2433488 2433656 -160166274 + LTR8A LTR ERV1 551 727 0 1543 193 21 17 chrX 2434718 2435008 -160164922 - AluJb SINE Alu -21 291 1 2973 81 26 71 chrX 2435177 2435576 -160164354 - L1PB1 LINE L1 0 6151 5777 351 0 0 0 chrX 2435576 2435615 -160164315 + (TG)n Simple_repeat Simple_repeat 2 40 0 2973 81 26 71 chrX 2435615 2435710 -160164220 - L1PB1 LINE L1 -374 5777 5679 987 180 9 18 chrX 2435982 2436199 -160163731 - L1MB2 LINE L1 -8 6163 5949 864 205 0 0 chrX 2437025 2437186 -160162744 + AluJb SINE Alu 137 297 -15 26 30 0 0 chrX 2437402 2437435 -160162495 + AT_rich Low_complexity Low_complexity 1 33 0 1639 203 11 34 chrX 2438100 2438525 -160161405 + MLT2B1 LTR ERVL 1 464 -56 2441 178 45 0 chrX 2438525 2438987 -160160943 - L1PB4 LINE L1 -4 6152 5670 1639 203 11 34 chrX 2438987 2439043 -160160887 + MLT2B1 LTR ERVL 464 520 0 29 28 0 0 chrX 2439848 2439884 -160160046 + AT_rich Low_complexity Low_complexity 1 36 0 220 189 38 0 chrX 2439922 2439975 -160159955 + (TA)n Simple_repeat Simple_repeat 1 55 0 1569 157 35 35 chrX 2440028 2440165 -160159765 + AluJo SINE Alu 1 137 -175 2312 105 0 0 chrX 2440165 2440471 -160159459 + AluSx SINE Alu 1 306 -6 1569 157 35 35 chrX 2440471 2440619 -160159311 + AluJo SINE Alu 136 286 -26 237 65 0 0 chrX 2440624 2440655 -160159275 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 526 244 103 0 chrX 2441262 2441418 -160158512 + L1MB5 LINE L1 5452 5623 -557 1916 235 14 6 chrX 2441709 2442194 -160157736 + L1MB5 LINE L1 5618 6106 -68 2805 145 21 53 chrX 2443997 2444527 -160155403 - L1PA16 LINE L1 0 6166 5654 353 280 100 72 chrX 2444902 2445263 -160154667 - L2 LINE L2 -2111 1203 833 885 207 15 0 chrX 2445979 2446177 -160153753 - L1MA7 LINE L1 -36 6255 6055 480 209 0 0 chrX 2446184 2446289 -160153641 - L1MB4 LINE L1 -10 6170 6066 29 101 0 0 chrX 2446300 2446399 -160153531 + AT_rich Low_complexity Low_complexity 1 99 0 7622 22 6 0 chrX 2446762 2448121 -160151809 + L1PA4 LINE L1 4790 6153 -2 25 31 0 0 chrX 2448721 2448753 -160151177 + AT_rich Low_complexity Low_complexity 1 32 0 576 233 16 0 chrX 2449354 2449483 -160150447 + MLT1C LTR MaLR 331 461 -6 740 248 13 9 chrX 2449488 2449718 -160150212 - MER33 DNA MER1_type -84 240 10 2091 241 95 40 chrX 2449736 2450517 -160149413 + LTR1B LTR ERV1 3 826 0 3130 128 4 0 chrX 2450694 2451186 -160148744 - MER75 DNA T2_type -20 494 1 252 0 0 0 chrX 2451804 2451832 -160148098 + (A)n Simple_repeat Simple_repeat 1 28 0 248 194 0 65 chrX 2451832 2451894 -160148036 - MER58A DNA MER1_type -21 86 29 24 0 0 0 chrX 2452065 2452089 -160147841 + AT_rich Low_complexity Low_complexity 1 24 0 248 291 19 19 chrX 2452233 2452336 -160147594 + (CATA)n Simple_repeat Simple_repeat 1 103 0 397 289 20 0 chrX 2452336 2452485 -160147445 - Zaphod DNA AcHobo -3435 596 445 2223 139 0 0 chrX 2452486 2452787 -160147143 - AluSx SINE Alu -11 301 1 686 262 47 83 chrX 2452994 2453029 -160146901 - Zaphod DNA AcHobo -3622 409 374 204 67 0 0 chrX 2453029 2453059 -160146871 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 686 262 47 83 chrX 2453059 2453432 -160146498 - Zaphod DNA AcHobo -3657 374 16 23 0 0 0 chrX 2453484 2453507 -160146423 + AT_rich Low_complexity Low_complexity 1 23 0 742 30 0 10 chrX 2453508 2453607 -160146323 - L1MA4A LINE L1 -10 6293 6196 284 127 18 0 chrX 2453985 2454040 -160145890 + (CAAT)n Simple_repeat Simple_repeat 1 56 0 401 232 0 10 chrX 2454262 2454361 -160145569 - MLT1C LTR MaLR -5 462 365 1322 241 17 17 chrX 2454586 2454943 -160144987 - MLT1C LTR MaLR -104 363 7 24 0 0 0 chrX 2457258 2457282 -160142648 + AT_rich Low_complexity Low_complexity 1 24 0 1755 177 0 4 chrX 2457419 2457696 -160142234 + AluJo SINE Alu 15 290 -22 45 19 0 0 chrX 2457711 2457763 -160142167 + AT_rich Low_complexity Low_complexity 1 52 0 988 231 57 102 chrX 2457841 2458271 -160141659 + MLT1C LTR MaLR 1 408 -59 1756 199 3 0 chrX 2458271 2458573 -160141357 + AluJb SINE Alu 1 303 -9 988 231 57 102 chrX 2458573 2458631 -160141299 + MLT1C LTR MaLR 408 467 0 23 0 0 0 chrX 2458780 2458803 -160141127 + AT_rich Low_complexity Low_complexity 1 23 0 1625 173 52 4 chrX 2458924 2459217 -160140713 - AluJo SINE Alu 0 306 1 2345 136 155 0 chrX 2459217 2459694 -160140236 - L1MA8 LINE L1 -141 6150 5600 301 279 82 71 chrX 2459755 2459981 -160139949 - L1M4 LINE L1 -744 5402 5171 2084 134 0 0 chrX 2459981 2460272 -160139658 - AluSx SINE Alu -15 297 7 301 279 82 71 chrX 2460272 2460339 -160139591 - L1M4 LINE L1 -975 5171 5106 24 53 0 0 chrX 2460348 2460386 -160139544 + AT_rich Low_complexity Low_complexity 1 38 0 692 286 82 70 chrX 2460705 2461108 -160138822 + MLT1G1 LTR MaLR 16 402 -153 2851 186 14 80 chrX 2461108 2461845 -160138085 - LTR8 LTR ERV1 0 691 4 692 286 82 70 chrX 2461845 2462000 -160137930 + MLT1G1 LTR MaLR 402 554 -1 2106 114 28 0 chrX 2462012 2462301 -160137629 - AluSq SINE Alu -16 297 1 475 272 71 48 chrX 2463339 2463607 -160136323 - L1M4 LINE L1 -3737 2409 2136 2234 113 3 0 chrX 2465200 2465509 -160134421 - AluSx SINE Alu 0 312 3 430 171 0 0 chrX 2465520 2465596 -160134334 - L1PA10 LINE L1 -1 6167 6092 2533 102 15 63 chrX 2465961 2466439 -160133491 + L1MA3 LINE L1 5850 6304 -1 22 0 0 0 chrX 2466439 2466461 -160133469 + AT_rich Low_complexity Low_complexity 1 22 0 237 289 0 0 chrX 2467532 2467584 -160132346 - L2 LINE L2 -7 3265 3214 645 155 0 0 chrX 2467984 2468087 -160131843 - FLAM_A SINE Alu -10 132 30 2126 126 86 8 chrX 2469620 2469992 -160129938 + MER57A LTR ERV1 3 403 0 1120 167 29 5 chrX 2470290 2470494 -160129436 + L1PB3 LINE L1 5937 6145 -9 25 0 0 0 chrX 2470494 2470519 -160129411 + AT_rich Low_complexity Low_complexity 1 25 0 744 271 0 38 chrX 2470529 2470739 -160129191 - MLT1A2 LTR MaLR 0 374 173 363 115 44 26 chrX 2470751 2470864 -160129066 + (CAGAGA)n Simple_repeat Simple_repeat 4 118 0 537 111 22 44 chrX 2470887 2470913 -160129017 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 -150 2126 57 40 47 chrX 2470913 2471212 -160128718 + AluY SINE Alu 1 297 -14 537 111 22 44 chrX 2471212 2471365 -160128565 + (CAGAGA)n Simple_repeat Simple_repeat 30 180 0 * 676 82 70 3 chrX 2471354 2471677 -160128253 + GA-rich Low_complexity Low_complexity 1 344 0 822 189 12 37 chrX 2471730 2471894 -160128036 - MLT1A2 LTR MaLR -213 161 2 2026 118 3 43 chrX 2472366 2472689 -160127241 - MER4A LTR ERV1 0 664 355 2236 101 11 46 chrX 2472727 2473094 -160126836 - MER4A LTR ERV1 -308 356 3 48 0 0 0 chrX 2473094 2473142 -160126788 + AT_rich Low_complexity Low_complexity 1 48 0 852 160 0 14 chrX 2474039 2474183 -160125747 - FRAM SINE Alu -10 166 25 250 202 71 60 chrX 2475055 2475139 -160124791 + L2 LINE L2 3227 3311 -2 888 224 72 89 chrX 2475297 2475646 -160124284 + Charlie1a DNA MER1_type 1 343 -1112 * 3252 194 55 52 chrX 2475639 2476293 -160123637 + Charlie1a DNA MER1_type 464 1124 -1637 1616 143 0 109 chrX 2476293 2476643 -160123287 + AluJo SINE Alu 1 312 0 3252 194 55 52 chrX 2476643 2476976 -160122954 + Charlie1a DNA MER1_type 1124 1454 -1 1883 173 127 2 chrX 2477297 2477707 -160122223 + MER65C LTR ERV1 1 461 0 21 71 0 0 chrX 2478012 2478054 -160121876 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chrX 2478520 2478545 -160121385 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chrX 2478559 2478601 -160121329 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chrX 2478643 2478670 -160121260 + AT_rich Low_complexity Low_complexity 1 27 0 208 321 22 30 chrX 2478882 2479016 -160120914 + (CATATA)n Simple_repeat Simple_repeat 5 137 0 220 271 0 0 chrX 2478967 2479015 -160120915 + (CA)n Simple_repeat Simple_repeat 1 48 0 3214 129 20 0 chrX 2479502 2479998 -160119932 - MER84 LTR ERV1 0 507 2 365 219 39 70 chrX 2480077 2480205 -160119725 - L1MC4 LINE L1 -8 8034 7911 546 217 35 7 chrX 2480338 2480481 -160119449 - L1MC4 LINE L1 -165 7877 7731 1342 258 100 67 chrX 2480482 2481505 -160118425 - L1MC4a LINE L1 -1389 6419 5363 345 331 139 14 chrX 2481605 2482028 -160117902 - L1MC4a LINE L1 -904 5242 4767 1594 170 4 4 chrX 2482133 2482398 -160117532 - AluJb SINE Alu -45 267 3 389 200 29 122 chrX 2483818 2484023 -160115907 + MER53 DNA DNA 2 187 -2 251 384 53 30 chrX 2484614 2484747 -160115183 - L2 LINE L2 -8 3264 3129 241 194 69 28 chrX 2485735 2485807 -160114123 + L1MC4 LINE L1 6629 6703 -1339 323 167 0 14 chrX 2485929 2485939 -160113991 + (TA)n Simple_repeat Simple_repeat 2 11 -61 878 196 70 15 chrX 2485939 2486138 -160113792 - MER6B DNA MER2_type 0 210 1 323 167 0 14 chrX 2486138 2486199 -160113731 + (TA)n Simple_repeat Simple_repeat 11 72 0 1732 135 8 8 chrX 2488545 2488812 -160111118 - AluSx SINE Alu -45 267 1 272 338 0 0 chrX 2489120 2489200 -160110730 + ERVL LTR ERVL 851 930 -4834 201 159 0 0 chrX 2489439 2489483 -160110447 + (TTG)n Simple_repeat Simple_repeat 2 45 0 308 343 76 46 chrX 2490334 2490728 -160109202 + ERVL LTR ERVL 1911 2316 -3338 842 191 6 6 chrX 2490770 2490938 -160108992 + MLT1B LTR MaLR 13 180 -210 1358 171 0 42 chrX 2490939 2491225 -160108705 + L1MA9 LINE L1 6008 6281 -31 1253 148 6 9 chrX 2491247 2491473 -160108457 + MLT1B LTR MaLR 167 396 0 1401 115 46 0 chrX 2491473 2491690 -160108240 + MLT1B LTR MaLR 158 384 -6 225 175 0 0 chrX 2491949 2491989 -160107941 - MLT1B LTR MaLR -183 207 168 420 202 35 1 chrX 2492004 2492118 -160107812 - L1MA9 LINE L1 -8 6292 6180 814 178 27 7 chrX 2492162 2492308 -160107622 + AluJb SINE Alu 134 282 -30 381 58 0 0 chrX 2492311 2492363 -160107567 + (TC)n Simple_repeat Simple_repeat 1 52 0 384 111 0 0 chrX 2492363 2492426 -160107504 + (TA)n Simple_repeat Simple_repeat 2 64 0 359 296 59 35 chrX 2492432 2492635 -160107295 + ERVL LTR ERVL 2725 2932 -2722 1425 294 42 8 chrX 2492647 2493031 -160106899 + MER70B LTR ERVL 4 400 -178 342 327 18 9 chrX 2495631 2495741 -160104189 + MER115 DNA AcHobo 158 268 -425 458 288 117 30 chrX 2496095 2496394 -160103536 + MER115 DNA AcHobo 352 676 -17 877 72 0 40 chrX 2496851 2496976 -160102954 - L1M1 LINE L1 -524 5778 5659 2814 90 26 9 chrX 2496976 2497397 -160102533 + L1MA1 LINE L1 5873 6301 -1 21 0 0 0 chrX 2497588 2497609 -160102321 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2498147 2498168 -160101762 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 2498753 2498794 -160101136 + AT_rich Low_complexity Low_complexity 1 41 0 3743 164 47 12 chrX 2499321 2500021 -160099909 + L1MA4 LINE L1 5505 6236 -64 1800 141 61 30 chrX 2500021 2500384 -160099546 - THE1C LTR MaLR -1 374 1 3743 164 47 12 chrX 2500384 2500447 -160099483 + L1MA4 LINE L1 6236 6295 -5 233 159 0 45 chrX 2500893 2500937 -160098993 - L2 LINE L2 0 3313 3272 222 37 0 0 chrX 2500949 2500976 -160098954 + (TC)n Simple_repeat Simple_repeat 2 28 0 1311 167 25 0 chrX 2501359 2501599 -160098331 - L1MA4 LINE L1 -461 5839 5594 274 294 113 78 chrX 2502044 2502442 -160097488 - MLT1J LTR MaLR -6 505 94 236 164 0 36 chrX 2502686 2502741 -160097189 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 202 292 10 73 chrX 2503349 2503445 -160096485 - L2 LINE L2 -1 3271 3182 331 244 27 0 chrX 2503497 2503589 -160096341 - FLAM SINE Alu -6 127 53 511 125 45 28 chrX 2503621 2503797 -160096133 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 509 76 57 25 chrX 2503852 2504009 -160095921 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 753 87 23 29 chrX 2504025 2504198 -160095732 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 215 325 24 0 chrX 2504509 2504592 -160095338 + GA-rich Low_complexity Low_complexity 6 90 0 279 303 67 0 chrX 2504702 2504791 -160095139 - MIR SINE MIR -111 151 57 1538 201 38 3 chrX 2505142 2505435 -160094495 - AluJo SINE Alu -9 303 1 22 0 0 0 chrX 2505437 2505459 -160094471 + AT_rich Low_complexity Low_complexity 1 22 0 337 273 66 62 chrX 2505822 2506049 -160093881 - L2 LINE L2 0 3313 3086 1106 65 28 0 chrX 2506538 2506754 -160093176 + (TAGA)n Simple_repeat Simple_repeat 1 222 0 682 99 60 12 chrX 2506790 2507198 -160092732 + (TAGA)n Simple_repeat Simple_repeat 1 427 0 733 127 39 8 chrX 2507247 2507511 -160092419 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 369 0 0 0 chrX 2507838 2507879 -160092051 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 196 18 0 chrX 2507891 2507947 -160091983 + (TA)n Simple_repeat Simple_repeat 2 58 0 2237 157 23 45 chrX 2507960 2508401 -160091529 - Tigger2a DNA MER2_type 0 434 4 213 94 0 0 chrX 2508401 2508433 -160091497 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 366 281 75 75 chrX 2509366 2509633 -160090297 + MLT1L LTR MaLR 1 267 -348 571 210 17 0 chrX 2510206 2510325 -160089605 - MLT1B LTR MaLR -264 126 6 297 68 0 0 chrX 2510325 2510369 -160089561 + (CA)n Simple_repeat Simple_repeat 2 45 0 1907 123 39 75 chrX 2511129 2511518 -160088412 - THE1C LTR MaLR 0 375 1 1756 242 43 2 chrX 2511699 2512120 -160087810 + MLT1C LTR MaLR 1 438 -29 222 208 0 0 chrX 2512861 2512909 -160087021 + (TG)n Simple_repeat Simple_repeat 1 48 0 206 121 0 0 chrX 2513524 2513557 -160086373 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chrX 2513825 2513854 -160086076 + (TG)n Simple_repeat Simple_repeat 1 29 0 1904 173 34 3 chrX 2514106 2514459 -160085471 - MLT1A1 LTR MaLR -1 364 1 350 278 68 25 chrX 2514540 2514702 -160085228 + MLT1G LTR MaLR 5 173 -376 1220 228 80 46 chrX 2514714 2515152 -160084778 + MLT1C LTR MaLR 15 467 0 1124 254 85 27 chrX 2515152 2515551 -160084379 + MLT1G LTR MaLR 166 549 0 292 125 21 0 chrX 2516415 2516463 -160083467 - MER3 DNA MER1_type -6 203 155 1740 136 75 59 chrX 2516486 2516813 -160083117 + L1MB3 LINE L1 5542 5822 -361 1909 184 0 0 chrX 2516813 2517123 -160082807 + AluJo SINE Alu 3 312 0 1740 136 75 59 chrX 2517123 2517176 -160082754 + L1MB3 LINE L1 5822 5873 -310 1909 184 18 3 chrX 2517178 2517515 -160082415 + MER7A DNA MER2_type 7 346 0 1304 132 0 5 chrX 2517515 2517720 -160082210 + L1MB3 LINE L1 5905 6108 -75 2636 140 28 28 chrX 2517722 2518160 -160081770 + L1PB4 LINE L1 5686 6126 -30 2054 110 86 6 chrX 2518160 2518497 -160081433 + THE1B LTR MaLR 1 364 0 2636 140 28 28 chrX 2518497 2518522 -160081408 + L1PB4 LINE L1 6125 6149 -7 239 348 43 14 chrX 2518570 2518708 -160081222 - MER3 DNA MER1_type -62 147 6 1969 153 0 0 chrX 2519255 2519570 -160080360 + AluSx SINE Alu 1 315 0 277 198 26 99 chrX 2520005 2520930 -160079000 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 386 217 49 14 chrX 2520063 2520131 -160079799 + (TA)n Simple_repeat Simple_repeat 2 66 -83 2255 166 14 40 chrX 2520131 2520198 -160079732 - Tigger2a DNA MER2_type -2274 434 367 2063 128 3 0 chrX 2520198 2520487 -160079443 - AluSx SINE Alu -22 290 1 2255 166 14 40 chrX 2520487 2520865 -160079065 - Tigger2a DNA MER2_type -2341 367 1 386 217 49 14 chrX 2520865 2520939 -160078991 + (TA)n Simple_repeat Simple_repeat 66 149 0 183 281 320 8 chrX 2521177 2521305 -160078625 + MER5A DNA MER1_type 9 176 -13 922 146 18 0 chrX 2522397 2522629 -160077301 + GA-rich Low_complexity Low_complexity 1 236 0 1137 115 75 0 chrX 2523287 2523487 -160076443 - L1MA5A LINE L1 -10 6287 6073 2839 95 48 83 chrX 2523487 2523983 -160075947 - MER1A DNA MER1_type -2 527 49 462 111 0 0 chrX 2523986 2524058 -160075872 - L1MA5A LINE L1 -213 6084 6013 1031 189 0 0 chrX 2524360 2524524 -160075406 - AluJb SINE Alu -13 299 136 4192 91 22 11 chrX 2524867 2525497 -160074433 + L1PB2 LINE L1 5515 6151 0 25 31 0 0 chrX 2525732 2525764 -160074166 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chrX 2525885 2525907 -160074023 + AT_rich Low_complexity Low_complexity 1 22 0 2449 82 0 3 chrX 2526217 2526520 -160073410 - AluSq SINE Alu -11 302 1 1295 127 81 163 chrX 2527750 2528247 -160071683 - LTR1 LTR ERV1 -329 456 1 406 235 52 15 chrX 2528305 2528441 -160071489 + (CTATG)n Simple_repeat Simple_repeat 3 143 0 396 194 28 33 chrX 2528441 2528621 -160071309 + (TTATG)n Simple_repeat Simple_repeat 1 179 0 1504 129 0 18 chrX 2529362 2529586 -160070344 + AluJo SINE Alu 1 220 -92 1052 174 58 45 chrX 2529586 2529810 -160070120 + AluJb SINE Alu 86 312 0 36 70 0 0 chrX 2531378 2531449 -160068481 + AT_rich Low_complexity Low_complexity 1 71 0 24 0 0 0 chrX 2531528 2531552 -160068378 + AT_rich Low_complexity Low_complexity 1 24 0 213 154 0 0 chrX 2531641 2531680 -160068250 + CT-rich Low_complexity Low_complexity 2 40 0 1392 182 31 35 chrX 2531698 2531956 -160067974 - AluJo SINE Alu -31 281 25 365 290 113 20 chrX 2532394 2532694 -160067236 - L1M4 LINE L1 -2130 4016 3689 22 0 0 0 chrX 2532723 2532745 -160067185 + AT_rich Low_complexity Low_complexity 1 22 0 1383 146 4 0 chrX 2532983 2533216 -160066714 + MLT1B LTR MaLR 31 264 -126 818 161 0 83 chrX 2533219 2533411 -160066519 - MLT1C LTR MaLR -291 176 1 288 53 0 0 chrX 2535209 2535247 -160064683 + (TG)n Simple_repeat Simple_repeat 2 39 0 1874 144 32 0 chrX 2535520 2535859 -160064071 - L1MA5 LINE L1 -5 6295 5946 2320 145 2 28 chrX 2535991 2536391 -160063539 + MLT1B LTR MaLR 1 390 0 319 166 36 50 chrX 2537176 2537371 -160062559 + (TA)n Simple_repeat Simple_repeat 1 192 0 180 111 0 0 chrX 2537377 2537404 -160062526 + (TG)n Simple_repeat Simple_repeat 2 28 0 215 91 91 42 chrX 2537479 2537644 -160062286 + (TA)n Simple_repeat Simple_repeat 1 173 0 189 107 0 0 chrX 2537670 2537698 -160062232 + (CA)n Simple_repeat Simple_repeat 1 28 0 372 224 0 0 chrX 2537701 2537768 -160062162 + MER6 DNA MER2_type -65 1 -143 868 123 6 37 chrX 2537794 2537957 -160061973 + AluSq SINE Alu 1 158 -155 189 74 0 0 chrX 2538538 2538565 -160061365 + (TG)n Simple_repeat Simple_repeat 2 28 0 1594 155 10 37 chrX 2538924 2539221 -160060709 + AluJo SINE Alu 6 294 -18 1823 290 76 32 chrX 2539675 2541071 -160058859 - L1MC/D LINE L1 -572 5575 4162 333 189 37 37 chrX 2541092 2541387 -160058543 + (TCTA)n Simple_repeat Simple_repeat 1 295 0 1681 271 69 66 chrX 2541402 2542574 -160057356 - L1MC/D LINE L1 -2010 4119 2944 1757 149 7 20 chrX 2542578 2542879 -160057051 + MER61A LTR ERV1 47 343 0 579 277 20 66 chrX 2542895 2543245 -160056685 - L1MC/D LINE L1 -3474 2655 2322 659 136 8 76 chrX 2543246 2543378 -160056552 - MER31A LTR ERV1 -361 124 2 3501 118 6 2 chrX 2543437 2543956 -160055974 + L1MA3 LINE L1 5374 5894 -411 315 0 0 0 chrX 2544269 2544304 -160055626 + (TG)n Simple_repeat Simple_repeat 2 36 0 258 323 21 0 chrX 2544633 2544729 -160055201 - L1ME LINE L1 -532 5589 5492 239 161 18 0 chrX 2544887 2544943 -160054987 + (CA)n Simple_repeat Simple_repeat 2 58 0 260 345 0 0 chrX 2544985 2545127 -160054803 + T-rich Low_complexity Low_complexity 1 142 0 286 80 40 0 chrX 2545474 2545524 -160054406 + (TA)n Simple_repeat Simple_repeat 1 52 0 2313 129 35 7 chrX 2545615 2546018 -160053912 - L1MA5A LINE L1 -10 6287 5874 319 336 35 9 chrX 2546020 2546136 -160053794 - L1MC/D LINE L1 -4892 1227 1109 911 168 19 0 chrX 2546284 2546445 -160053485 + FRAM SINE Alu 5 168 -8 1510 172 86 0 chrX 2546451 2546742 -160053188 - Tigger3(Golem) DNA MER2_type -2713 316 1 2306 119 0 0 chrX 2546751 2547063 -160052867 - AluSx SINE Alu 0 312 1 269 265 10 49 chrX 2547275 2547377 -160052553 + MIR SINE MIR 94 191 -71 262 273 39 0 chrX 2547666 2547743 -160052187 - MER20 DNA MER1_type -1 218 139 308 152 0 0 chrX 2547745 2547791 -160052139 + MSTA LTR MaLR 1 46 -382 429 290 39 78 chrX 2547903 2548262 -160051668 + L1M4 LINE L1 2789 3133 -3013 1528 62 4 74 chrX 2548443 2548687 -160051243 + Tigger3(Golem) DNA MER2_type 2202 2428 -601 755 173 0 15 chrX 2548691 2548824 -160051106 + AluJo/FLAM SINE Alu 1 131 -171 379 177 0 0 chrX 2548824 2548886 -160051044 + AluSq SINE Alu 134 195 -108 * 3643 132 35 5 chrX 2548881 2549479 -160050451 + Tigger3(Golem) DNA MER2_type 2414 3029 0 401 185 25 38 chrX 2549479 2549636 -160050294 + (TA)n Simple_repeat Simple_repeat 1 155 0 216 92 46 46 chrX 2549664 2549729 -160050201 + (TA)n Simple_repeat Simple_repeat 2 66 0 349 123 27 68 chrX 2549729 2549802 -160050128 - MER6 DNA MER2_type 0 865 796 210 145 0 116 chrX 2600992 2601061 -159998869 + (TCCCC)n Simple_repeat Simple_repeat 4 64 0 1828 114 0 8 chrX 2601137 2601392 -159998538 + AluSx SINE Alu 1 253 -59 396 194 28 33 chrX 2602023 2602203 -159997727 + (CATAA)n Simple_repeat Simple_repeat 1 179 0 406 235 52 15 chrX 2602203 2602339 -159997591 + (CATAG)n Simple_repeat Simple_repeat 3 143 0 3607 100 96 78 chrX 2602410 2603170 -159996760 + LTR1 LTR ERV1 12 785 0 305 204 0 45 chrX 2603195 2603352 -159996578 + (CATAG)n Simple_repeat Simple_repeat 1 150 0 270 168 21 42 chrX 2603375 2603470 -159996460 + (CATAG)n Simple_repeat Simple_repeat 2 94 0 592 166 11 44 chrX 2603474 2603655 -159996275 + (CATAA)n Simple_repeat Simple_repeat 5 179 0 365 235 23 45 chrX 2603659 2603791 -159996139 + (CATAG)n Simple_repeat Simple_repeat 4 132 0 361 288 117 30 chrX 2603961 2604260 -159995670 - MER115 DNA AcHobo -17 676 352 305 327 18 9 chrX 2604614 2604724 -159995206 - MER115 DNA AcHobo -425 268 158 491 103 75 46 chrX 2604947 2605121 -159994809 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 1688 160 10 70 chrX 2605583 2605896 -159994034 - AluJo SINE Alu -18 294 1 195 42 0 0 chrX 2606054 2606078 -159993852 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 607 155 0 39 chrX 2606310 2606439 -159993491 + L1MB5 LINE L1 5860 5983 -191 25 31 0 0 chrX 2606479 2606511 -159993419 + AT_rich Low_complexity Low_complexity 1 32 0 976 171 28 0 chrX 2606516 2606697 -159993233 + L1MB5 LINE L1 5980 6165 -9 769 136 36 7 chrX 2606857 2606997 -159992933 - L1PA16 LINE L1 -304 5862 5719 295 50 0 0 chrX 2606995 2607035 -159992895 + L1PA15 LINE L1 5827 5866 -299 * 913 133 7 0 chrX 2607179 2607330 -159992600 + L1PA15 LINE L1 5910 6061 -104 520 298 70 26 chrX 2607663 2608079 -159991851 + L1MC/D LINE L1 5284 5717 -2325 191 306 102 46 chrX 2608432 2608449 -159991481 - L2 LINE L2 -2 3311 3296 1606 171 55 47 chrX 2608449 2608811 -159991119 + MER47A DNA MER2_type 1 365 -1 191 306 102 46 chrX 2608811 2608901 -159991029 - L2 LINE L2 -17 3296 3198 1289 144 0 0 chrX 2608938 2609126 -159990804 - AluJb SINE Alu -4 308 121 1406 182 31 35 chrX 2609810 2610068 -159989862 + AluJo SINE Alu 25 281 -31 213 154 0 0 chrX 2610086 2610125 -159989805 + GA-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chrX 2610214 2610238 -159989692 + AT_rich Low_complexity Low_complexity 1 24 0 36 70 0 0 chrX 2610317 2610388 -159989542 + AT_rich Low_complexity Low_complexity 1 71 0 1085 174 58 45 chrX 2611956 2612180 -159987750 - AluJb SINE Alu 0 312 86 1517 129 0 18 chrX 2612180 2612404 -159987526 - AluJo SINE Alu -92 220 1 1186 148 6 9 chrX 2612678 2612904 -159987026 + MLT1B LTR MaLR 167 396 0 1326 115 46 0 chrX 2612904 2613121 -159986809 + MLT1B LTR MaLR 158 384 -6 396 188 42 0 chrX 2613436 2613532 -159986398 - L1MA9 LINE L1 -22 6290 6191 807 178 27 7 chrX 2613593 2613739 -159986191 + AluJb SINE Alu 134 282 -30 381 58 0 0 chrX 2613742 2613794 -159986136 + (TC)n Simple_repeat Simple_repeat 1 52 0 402 108 0 0 chrX 2613794 2613859 -159986071 + (TA)n Simple_repeat Simple_repeat 2 66 0 335 306 56 20 chrX 2613873 2614069 -159985861 + HERVL LTR ERVL 2730 2932 -2722 1297 294 42 8 chrX 2614081 2614465 -159985465 + MER70B LTR ERVL 4 400 -178 387 0 0 0 chrX 2617008 2617051 -159982879 + (TA)n Simple_repeat Simple_repeat 1 43 0 987 180 9 18 chrX 2617532 2617749 -159982181 + L1MB2 LINE L1 5949 6163 -8 2973 81 26 71 chrX 2618021 2618116 -159981814 + L1PB1 LINE L1 5679 5777 -374 351 0 0 0 chrX 2618116 2618155 -159981775 + (CA)n Simple_repeat Simple_repeat 2 40 0 2973 81 26 71 chrX 2618155 2618554 -159981376 + L1PB1 LINE L1 5777 6151 0 1543 193 21 17 chrX 2618723 2619013 -159980917 + AluJb SINE Alu 1 291 -21 1268 179 112 166 chrX 2620075 2620243 -159979687 - LTR8A LTR ERV1 0 727 551 3206 123 16 12 chrX 2620243 2620754 -159979176 + MER75 DNA T2_type 2 514 0 1268 179 112 166 chrX 2620754 2621354 -159978576 - LTR8A LTR ERV1 -176 551 1 3056 180 56 3 chrX 2621720 2622310 -159977620 + LTR26E LTR ERV1 2 622 0 1241 160 106 83 chrX 2622536 2622923 -159977007 - LTR8A LTR ERV1 0 727 332 323 183 28 14 chrX 2622925 2622996 -159976934 + MER84 LTR ERVI 3 74 -433 2700 142 76 6 chrX 2622996 2623469 -159976461 + MER84 LTR ERV1 2 507 0 1926 129 18 29 chrX 2623469 2623552 -159976378 - LTR8A LTR ERV1 -391 336 254 2806 81 3 16 chrX 2623552 2623921 -159976009 - THE1B LTR MaLR 0 364 1 1926 129 18 29 chrX 2623921 2624177 -159975753 - LTR8A LTR ERV1 -473 254 1 424 171 0 0 chrX 2624412 2624488 -159975442 + L1PA10 LINE L1 6092 6167 -1 2236 114 3 0 chrX 2624499 2624806 -159975124 + AluSx SINE Alu 3 310 -2 579 133 51 0 chrX 2625042 2625140 -159974790 - LTR8A LTR ERV1 -624 103 1 424 171 0 0 chrX 2625376 2625452 -159974478 + L1PA10 LINE L1 6092 6167 -1 2067 136 3 0 chrX 2625463 2625772 -159974158 + AluSx SINE Alu 3 312 0 476 272 71 48 chrX 2627365 2627633 -159972297 + L1M4 LINE L1 2136 2409 -3737 2106 114 28 0 chrX 2628671 2628960 -159970970 + AluSq SINE Alu 1 297 -16 692 286 82 68 chrX 2628972 2629126 -159970804 - MLT1G1 LTR MaLR -1 554 404 2851 186 14 80 chrX 2629126 2629863 -159970067 + LTR8 LTR ERV1 4 691 0 692 286 82 68 chrX 2629863 2630266 -159969664 - MLT1G1 LTR MaLR -151 404 16 24 53 0 0 chrX 2630585 2630623 -159969307 + AT_rich Low_complexity Low_complexity 1 38 0 301 279 82 71 chrX 2630632 2630699 -159969231 + L1M4 LINE L1 5106 5171 -975 2084 134 0 0 chrX 2630699 2630990 -159968940 + AluSx SINE Alu 7 297 -15 301 279 82 71 chrX 2630990 2631216 -159968714 + L1M4 LINE L1 5171 5402 -744 2345 136 155 0 chrX 2631277 2631754 -159968176 + L1MA8 LINE L1 5600 6150 -141 1626 173 52 4 chrX 2631754 2632047 -159967883 + AluJo SINE Alu 1 306 0 22 0 0 0 chrX 2632169 2632191 -159967739 + AT_rich Low_complexity Low_complexity 1 22 0 988 231 57 102 chrX 2632340 2632398 -159967532 - MLT1C LTR MaLR 0 467 408 1746 202 3 0 chrX 2632398 2632700 -159967230 - AluJb SINE Alu -9 303 1 988 231 57 102 chrX 2632700 2633130 -159966800 - MLT1C LTR MaLR -59 408 1 45 19 0 0 chrX 2633208 2633260 -159966670 + AT_rich Low_complexity Low_complexity 1 52 0 1755 177 0 4 chrX 2633275 2633552 -159966378 - AluJo SINE Alu -22 290 15 24 0 0 0 chrX 2633689 2633713 -159966217 + AT_rich Low_complexity Low_complexity 1 24 0 1322 241 17 17 chrX 2636028 2636385 -159963545 + MLT1C LTR MaLR 7 363 -104 401 232 0 10 chrX 2636610 2636709 -159963221 + MLT1C LTR MaLR 365 462 -5 284 127 18 0 chrX 2636931 2636986 -159962944 + (ATTG)n Simple_repeat Simple_repeat 1 56 0 742 30 0 10 chrX 2637364 2637463 -159962467 + L1MA4A LINE L1 6196 6293 -10 23 0 0 0 chrX 2637464 2637487 -159962443 + AT_rich Low_complexity Low_complexity 1 23 0 686 262 47 83 chrX 2637539 2637912 -159962018 + Zaphod DNA AcHobo 16 374 -3657 204 67 0 0 chrX 2637912 2637942 -159961988 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 686 262 47 83 chrX 2637942 2637977 -159961953 + Zaphod DNA AcHobo 374 409 -3622 2223 139 0 0 chrX 2638184 2638485 -159961445 + AluSx SINE Alu 1 301 -11 397 289 20 0 chrX 2638486 2638635 -159961295 + Zaphod DNA AcHobo 445 596 -3435 248 291 19 19 chrX 2638635 2638738 -159961192 + (TATG)n Simple_repeat Simple_repeat 1 103 0 24 0 0 0 chrX 2638882 2638906 -159961024 + AT_rich Low_complexity Low_complexity 1 24 0 248 194 0 65 chrX 2639077 2639139 -159960791 + MER58A DNA MER1_type 29 86 -21 243 0 0 0 chrX 2639139 2639166 -159960764 + (T)n Simple_repeat Simple_repeat 1 27 0 359 46 93 33 chrX 2639595 2639746 -159960184 + (TA)n Simple_repeat Simple_repeat 2 161 0 264 143 0 0 chrX 2639746 2639788 -159960142 - AluJ/FLAM SINE Alu -244 58 17 27 0 0 0 chrX 2639847 2639874 -159960056 + AT_rich Low_complexity Low_complexity 1 27 0 233 66 66 33 chrX 2639913 2639974 -159959956 + (TATAG)n Simple_repeat Simple_repeat 2 64 0 319 154 65 18 chrX 2639988 2640157 -159959773 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 292 161 0 43 chrX 2640258 2640351 -159959579 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 803 189 78 15 chrX 2641786 2641992 -159957938 + MER20 DNA MER1_type 1 219 0 879 229 57 0 chrX 2643685 2643895 -159956035 - MLT1A1 LTR MaLR 0 365 144 3640 160 70 89 chrX 2643912 2644094 -159955836 + MER21A LTR ERV1 5 189 -742 2015 159 3 0 chrX 2644094 2644402 -159955528 - AluJb SINE Alu -3 309 1 3640 160 70 89 chrX 2644402 2645138 -159954792 + MER21A LTR ERV1 189 905 -26 846 124 7 0 chrX 2645180 2645317 -159954613 - MLT1A1 LTR MaLR -227 138 1 308 136 0 0 chrX 2645573 2645632 -159954298 + L1PA15 LINE L1 6107 6165 0 2380 75 3 0 chrX 2645636 2645928 -159954002 + AluSp SINE Alu 1 293 -20 1312 228 80 13 chrX 2646119 2646492 -159953438 + MLT1C LTR MaLR 1 398 -69 41 48 0 0 chrX 2646503 2646565 -159953365 + AT_rich Low_complexity Low_complexity 1 62 0 30 69 0 0 chrX 2646666 2646724 -159953206 + AT_rich Low_complexity Low_complexity 1 58 0 73 52 0 0 chrX 2646771 2646886 -159953044 + AT_rich Low_complexity Low_complexity 1 115 0 73 76 0 0 chrX 2646954 2647111 -159952819 + AT_rich Low_complexity Low_complexity 1 157 0 217 195 46 11 chrX 2647152 2647239 -159952691 + (TTATA)n Simple_repeat Simple_repeat 3 92 0 207 150 20 88 chrX 2647319 2647466 -159952464 + (TTATA)n Simple_repeat Simple_repeat 1 137 0 55 89 0 0 chrX 2647494 2647640 -159952290 + AT_rich Low_complexity Low_complexity 1 146 0 279 169 0 17 chrX 2647690 2647749 -159952181 + MLT1B LTR MaLR 333 390 0 6795 184 149 23 chrX 2648685 2650244 -159949686 - MER52A LTR ERV1 0 1755 1 1845 144 42 23 chrX 2650288 2650642 -159949288 + MSTA LTR MaLR 1 361 -67 342 210 20 40 chrX 2650743 2650843 -159949087 + MLT1C LTR MaLR 368 465 -2 522 247 27 7 chrX 2650855 2651005 -159948925 + MER3 DNA MER1_type 52 204 -5 22 0 0 0 chrX 2652397 2652419 -159947511 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chrX 2652444 2652470 -159947460 + (T)n Simple_repeat Simple_repeat 1 26 0 3130 128 4 0 chrX 2653084 2653576 -159946354 + MER75 DNA T2_type 1 494 -20 2091 241 95 40 chrX 2653753 2654534 -159945396 - LTR1B LTR ERV1 0 826 3 740 248 13 9 chrX 2654552 2654782 -159945148 + MER33 DNA MER1_type 10 240 -84 576 233 16 0 chrX 2654787 2654916 -159945014 - MLT1C LTR MaLR -6 461 331 25 31 0 0 chrX 2655517 2655549 -159944381 + AT_rich Low_complexity Low_complexity 1 32 0 7622 22 7 0 chrX 2656149 2657508 -159942422 - L1PA4 LINE L1 -2 6153 4790 29 101 0 0 chrX 2657871 2657970 -159941960 + AT_rich Low_complexity Low_complexity 1 99 0 480 209 0 0 chrX 2657981 2658086 -159941844 + L1MB4 LINE L1 6066 6170 -10 885 207 15 0 chrX 2658093 2658291 -159941639 + L1MA7 LINE L1 6055 6255 -36 353 280 100 72 chrX 2659007 2659368 -159940562 + L2 LINE L2 833 1203 -2111 2805 145 21 53 chrX 2659743 2660273 -159939657 + L1PA16 LINE L1 5654 6166 0 1916 235 14 6 chrX 2662076 2662561 -159937369 - L1MB5 LINE L1 -68 6106 5618 526 244 103 0 chrX 2662852 2663008 -159936922 - L1MB5 LINE L1 -557 5623 5452 237 65 0 0 chrX 2663615 2663646 -159936284 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1569 157 35 35 chrX 2663651 2663799 -159936131 - AluJo SINE Alu -26 286 136 2312 105 0 0 chrX 2663799 2664105 -159935825 - AluSx SINE Alu -6 306 1 1569 157 35 35 chrX 2664105 2664242 -159935688 - AluJo SINE Alu -175 137 1 220 189 38 0 chrX 2664295 2664348 -159935582 + (TA)n Simple_repeat Simple_repeat 1 55 0 29 28 0 0 chrX 2664386 2664422 -159935508 + AT_rich Low_complexity Low_complexity 1 36 0 1761 203 11 34 chrX 2665227 2665283 -159934647 - MLT2B1 LTR ERVL 0 520 464 2467 178 45 0 chrX 2665283 2665745 -159934185 + L1PB4 LINE L1 5670 6152 -4 1761 203 11 34 chrX 2665745 2666170 -159933760 - MLT2B1 LTR ERVL -56 464 1 25 31 0 0 chrX 2666961 2666993 -159932937 + AT_rich Low_complexity Low_complexity 1 32 0 864 205 0 0 chrX 2667209 2667370 -159932560 - AluJb SINE Alu -15 297 137 441 299 40 70 chrX 2667546 2667917 -159932013 - L1M4 LINE L1 -2998 3148 2789 308 152 0 0 chrX 2668029 2668075 -159931855 - MSTA LTR MaLR -382 46 1 277 260 39 0 chrX 2668077 2668154 -159931776 + MER20 DNA MER1_type 139 218 -1 269 265 10 49 chrX 2668402 2668504 -159931426 - MIR SINE MIR -71 191 94 2306 119 0 0 chrX 2668716 2669028 -159930902 + AluSx SINE Alu 1 312 0 4938 110 29 89 chrX 2669037 2669334 -159930596 + Tigger3(Golem) DNA MER2_type 1 314 -2715 1894 166 0 13 chrX 2669334 2669642 -159930288 - AluJb SINE Alu -8 304 1 4938 110 29 89 chrX 2669642 2669977 -159929953 + Tigger3(Golem) DNA MER2_type 314 667 -2362 755 173 0 15 chrX 2669977 2670110 -159929820 + FLAM_C SINE Alu 1 131 -2 4938 110 29 89 chrX 2670110 2670766 -159929164 + Tigger3(Golem) DNA MER2_type 667 3029 0 401 185 25 38 chrX 2670766 2670923 -159929007 + (TA)n Simple_repeat Simple_repeat 1 155 0 216 92 46 46 chrX 2670951 2671016 -159928914 + (TA)n Simple_repeat Simple_repeat 1 65 0 322 114 0 0 chrX 2671016 2671060 -159928870 - MER6B DNA MER2_type 0 210 167 180 111 0 0 chrX 2671264 2671291 -159928639 + (CA)n Simple_repeat Simple_repeat 2 28 0 244 244 42 42 chrX 2671297 2671465 -159928465 + (TATATG)n Simple_repeat Simple_repeat 5 172 0 * 319 166 36 50 chrX 2671353 2671492 -159928438 + (TA)n Simple_repeat Simple_repeat 1 137 0 2320 145 2 28 chrX 2672277 2672677 -159927253 - MLT1B LTR MaLR 0 390 1 1874 144 32 0 chrX 2672809 2673148 -159926782 + L1MA5 LINE L1 5946 6295 -5 288 53 0 0 chrX 2673421 2673459 -159926471 + (CA)n Simple_repeat Simple_repeat 2 39 0 818 161 0 83 chrX 2675257 2675449 -159924481 + MLT1C LTR MaLR 1 176 -291 1383 146 4 0 chrX 2675452 2675685 -159924245 - MLT1B LTR MaLR -126 264 31 1046 165 0 54 chrX 2676024 2676248 -159923682 - L1MA9 LINE L1 -93 6219 6008 842 191 6 6 chrX 2676249 2676417 -159923513 - MLT1B LTR MaLR -210 180 13 326 343 76 46 chrX 2676459 2676853 -159923077 - HERV16 LTR ERVL -2793 2203 1905 201 159 0 0 chrX 2677704 2677748 -159922182 + (CAA)n Simple_repeat Simple_repeat 2 45 0 272 338 0 0 chrX 2677987 2678067 -159921863 - HERV16 LTR ERVL -4834 930 851 1732 135 8 8 chrX 2678375 2678642 -159921288 + AluSx SINE Alu 1 267 -45 323 167 0 14 chrX 2680988 2681049 -159918881 + (TA)n Simple_repeat Simple_repeat 1 62 -9 878 196 70 15 chrX 2681049 2681248 -159918682 + MER6B DNA MER2_type 1 210 0 323 167 0 14 chrX 2681248 2681258 -159918672 + (TA)n Simple_repeat Simple_repeat 62 71 0 241 194 69 28 chrX 2681380 2681452 -159918478 - L1MC4 LINE L1 -1339 6703 6629 251 384 53 30 chrX 2682440 2682573 -159917357 + L2 LINE L2 3129 3264 -8 389 200 29 122 chrX 2683164 2683369 -159916561 - MER53 DNA DNA -2 187 2 1594 170 4 4 chrX 2684789 2685054 -159914876 + AluJb SINE Alu 3 267 -45 345 331 139 14 chrX 2685159 2685582 -159914348 + L1MC4a LINE L1 4767 5242 -904 1342 258 100 67 chrX 2685682 2686705 -159913225 + L1MC4a LINE L1 5363 6419 -1389 546 217 35 7 chrX 2686706 2686849 -159913081 + L1MC4 LINE L1 7731 7877 -165 365 219 39 70 chrX 2686982 2687110 -159912820 + L1MC4 LINE L1 7911 8034 -8 3214 129 20 0 chrX 2687189 2687685 -159912245 + MER84 LTR ERV1 2 507 0 220 271 0 0 chrX 2688171 2688220 -159911710 + (TG)n Simple_repeat Simple_repeat 1 49 0 27 0 0 0 chrX 2688517 2688544 -159911386 + AT_rich Low_complexity Low_complexity 1 27 0 21 71 0 0 chrX 2688586 2688628 -159911302 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chrX 2688642 2688667 -159911263 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chrX 2689133 2689175 -159910755 + AT_rich Low_complexity Low_complexity 1 42 0 1883 173 127 2 chrX 2689480 2689890 -159910040 - MER65C LTR ERV1 0 461 1 3252 194 55 52 chrX 2690211 2690544 -159909386 - Charlie1a DNA MER1_type -1307 1454 1124 1616 143 0 109 chrX 2690544 2690894 -159909036 - AluJo SINE Alu 0 312 1 3252 194 55 52 chrX 2690894 2691548 -159908382 - Charlie1a DNA MER1_type -1637 1124 464 888 224 72 89 chrX 2691541 2691890 -159908040 - Charlie1a DNA MER1_type -1112 343 1 * 250 202 71 60 chrX 2692048 2692132 -159907798 - L2 LINE L2 -2 3311 3227 852 160 0 14 chrX 2693004 2693148 -159906782 + FRAM SINE Alu 25 166 -10 48 0 0 0 chrX 2694045 2694093 -159905837 + AT_rich Low_complexity Low_complexity 1 48 0 2236 101 11 46 chrX 2694093 2694460 -159905470 + MER4A LTR ERV1 3 356 -308 2026 118 3 43 chrX 2694498 2694821 -159905109 + MER4A LTR ERV1 355 664 0 822 189 12 37 chrX 2695293 2695457 -159904473 + MLT1A2 LTR MaLR 2 161 -213 676 82 70 3 chrX 2695510 2695833 -159904097 + CT-rich Low_complexity Low_complexity 1 344 0 366 139 39 8 chrX 2695845 2695974 -159903956 + CT-rich Low_complexity Low_complexity 2 134 0 909 68 0 0 chrX 2695975 2696093 -159903837 - AluY SINE Alu -14 297 180 26 0 0 0 chrX 2696223 2696249 -159903681 + AT_rich Low_complexity Low_complexity 1 26 0 403 121 0 0 chrX 2696249 2696307 -159903623 - LTR29 LTR ERV1 -66 556 499 222 287 11 0 chrX 2697082 2697169 -159902761 + (TA)n Simple_repeat Simple_repeat 1 88 0 1202 164 5 0 chrX 2698796 2698991 -159900939 - AluSg/x SINE Alu -9 300 105 483 253 53 95 chrX 2699043 2699423 -159900507 - LTR37B LTR ERV1 -100 368 5 520 148 17 38 chrX 2700175 2700344 -159899586 + AluJo SINE Alu 81 308 -4 50 90 0 0 chrX 2700354 2700488 -159899442 + AT_rich Low_complexity Low_complexity 1 134 0 416 256 67 3 chrX 2700756 2700882 -159899048 - MIR SINE MIR -43 165 32 1114 220 48 34 chrX 2703138 2703406 -159896524 - L1PA16 LINE L1 -16 6150 5879 2440 70 0 3 chrX 2703924 2704224 -159895706 + AluSc SINE Alu 1 299 -10 2472 126 86 14 chrX 2704425 2704846 -159895084 + L1PA16 LINE L1 5712 6162 -4 22 56 0 0 chrX 2705680 2705716 -159894214 + AT_rich Low_complexity Low_complexity 1 36 0 1267 277 60 23 chrX 2705893 2706410 -159893520 - L1ME1 LINE L1 -44 6191 5656 3530 122 19 13 chrX 2706411 2706936 -159892994 - MER1A DNA MER1_type -1 528 1 1047 231 46 8 chrX 2706936 2707388 -159892542 - L1ME1 LINE L1 -572 5663 5197 1318 220 15 61 chrX 2707421 2707893 -159892037 - L1ME1 LINE L1 -4041 2355 1906 625 106 30 8 chrX 2708344 2708476 -159891454 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 21 0 0 0 chrX 2708522 2708543 -159891387 + AT_rich Low_complexity Low_complexity 1 21 0 1837 117 0 25 chrX 2709282 2709564 -159890366 - MER4A LTR ERV1 0 664 390 2024 100 19 10 chrX 2711350 2711660 -159888270 - L1PB1 LINE L1 -115 6036 5724 225 0 0 0 chrX 2711673 2711700 -159888230 - MADE1 DNA Mariner -49 31 5 967 309 102 43 chrX 2711712 2712598 -159887332 - L2 LINE L2 -35 3278 2328 510 116 0 116 chrX 2712832 2712857 -159887073 + L1MA4 LINE L1 6028 6054 -246 1264 216 40 33 chrX 2712857 2713158 -159886772 + AluJo SINE Alu 1 303 -9 510 116 0 116 chrX 2713158 2713253 -159886677 + L1MA4 LINE L1 6054 6134 -166 1923 112 9 31 chrX 2714391 2714525 -159885405 + L1PB1 LINE L1 5478 5613 -538 1930 168 19 67 chrX 2714525 2715001 -159884929 - MLT2A2 LTR ERVL 0 453 1 1923 112 9 31 chrX 2715001 2715188 -159884742 + L1PB1 LINE L1 5613 5792 -359 276 149 0 0 chrX 2715188 2715235 -159884695 + (CA)n Simple_repeat Simple_repeat 2 48 0 418 100 0 0 chrX 2715235 2715295 -159884635 + L1PB1 LINE L1 5782 5841 -310 2482 117 5 0 chrX 2715299 2715667 -159884263 + L1PB1 LINE L1 5782 6151 0 281 250 11 45 chrX 2716023 2716111 -159883819 + MLT1I LTR MaLR 316 400 -9 255 370 84 30 chrX 2716173 2716541 -159883389 - L2 LINE L2 -2230 1084 697 937 323 105 45 chrX 2716546 2716665 -159883265 - L2 LINE L2 -2487 827 717 362 287 115 19 chrX 2716665 2716822 -159883108 + MER5B DNA MER1_type 3 174 -4 937 323 105 45 chrX 2716822 2717302 -159882628 - L2 LINE L2 -2597 717 192 2163 122 0 0 chrX 2718009 2718303 -159881627 - AluSq SINE Alu -17 296 3 22 56 0 0 chrX 2718976 2719012 -159880918 + AT_rich Low_complexity Low_complexity 1 36 0 346 154 33 0 chrX 2720324 2720415 -159879515 + (TAGG)n Simple_repeat Simple_repeat 1 94 0 479 208 11 22 chrX 2720477 2720655 -159879275 + (TAGG)n Simple_repeat Simple_repeat 3 178 0 188 203 27 0 chrX 2720667 2720741 -159879189 + (TAGG)n Simple_repeat Simple_repeat 4 79 0 609 171 17 17 chrX 2720787 2720962 -159878968 + (TAGG)n Simple_repeat Simple_repeat 4 178 0 361 231 12 6 chrX 2721001 2721174 -159878756 + (TAGG)n Simple_repeat Simple_repeat 1 174 0 255 248 0 0 chrX 2721202 2721307 -159878623 + (TAGG)n Simple_repeat Simple_repeat 2 106 0 378 235 12 18 chrX 2721401 2721567 -159878363 + (TAGG)n Simple_repeat Simple_repeat 2 166 0 383 253 21 11 chrX 2721832 2721927 -159878003 + MER81 DNA DNA 18 113 -1 565 192 50 8 chrX 2722386 2722506 -159877424 - L1PB3 LINE L1 -93 6061 5937 2126 126 86 8 chrX 2722804 2723176 -159876754 - MER57A LTR ERV1 0 403 3 645 155 0 0 chrX 2724710 2724813 -159875117 + FLAM_A SINE Alu 30 132 -10 237 289 0 0 chrX 2725213 2725265 -159874665 + L2 LINE L2 3214 3265 -7 22 0 0 0 chrX 2726336 2726358 -159873572 + AT_rich Low_complexity Low_complexity 1 22 0 6065 107 11 21 chrX 2726358 2727299 -159872631 - L1MA3 LINE L1 -1 6304 5374 659 136 8 76 chrX 2727358 2727490 -159872440 + MER31A LTR ERV1 2 124 -361 579 277 20 66 chrX 2727491 2727841 -159872089 + L1MC/D LINE L1 2339 2672 -3474 1757 149 7 20 chrX 2727857 2728158 -159871772 - MER61A LTR ERV1 0 343 47 1681 271 69 66 chrX 2728162 2729334 -159870596 + L1MC/D LINE L1 2961 4136 -2010 333 189 37 37 chrX 2729349 2729644 -159870286 + (TAGA)n Simple_repeat Simple_repeat 1 295 0 1823 290 76 32 chrX 2729665 2731061 -159868869 + L1MC/D LINE L1 4179 5644 -572 1594 155 10 37 chrX 2731515 2731812 -159868118 - AluJo SINE Alu -18 294 6 189 74 0 0 chrX 2732171 2732198 -159867732 + (CA)n Simple_repeat Simple_repeat 2 28 0 877 72 0 40 chrX 2732619 2732744 -159867186 - L1M1 LINE L1 -524 5778 5659 2814 90 26 9 chrX 2732744 2733165 -159866765 + L1MA1 LINE L1 5873 6301 -1 21 0 0 0 chrX 2733356 2733377 -159866553 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2733915 2733936 -159865994 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 2734521 2734562 -159865368 + AT_rich Low_complexity Low_complexity 1 41 0 3743 164 47 12 chrX 2735089 2735789 -159864141 + L1MA4 LINE L1 5505 6236 -64 1800 141 61 30 chrX 2735789 2736152 -159863778 - THE1C LTR MaLR -1 374 1 3743 164 47 12 chrX 2736152 2736215 -159863715 + L1MA4 LINE L1 6236 6295 -5 233 159 0 45 chrX 2736661 2736705 -159863225 - L2 LINE L2 0 3313 3272 222 37 0 0 chrX 2736717 2736744 -159863186 + (TC)n Simple_repeat Simple_repeat 2 28 0 1311 167 25 0 chrX 2737127 2737367 -159862563 - L1MA4 LINE L1 -461 5839 5594 353 313 107 58 chrX 2737812 2738205 -159861725 - MLT1J LTR MaLR -6 505 94 236 164 0 36 chrX 2738448 2738503 -159861427 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 202 292 10 73 chrX 2739111 2739207 -159860723 - L2 LINE L2 -1 3271 3182 331 244 27 0 chrX 2739259 2739351 -159860579 - FLAM SINE Alu -6 127 53 511 125 45 28 chrX 2739383 2739559 -159860371 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 509 76 57 25 chrX 2739614 2739771 -159860159 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 753 87 23 29 chrX 2739787 2739960 -159859970 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 215 325 24 0 chrX 2740271 2740354 -159859576 + GA-rich Low_complexity Low_complexity 6 90 0 279 303 67 0 chrX 2740464 2740553 -159859377 - MIR SINE MIR -111 151 57 1538 201 38 3 chrX 2740904 2741197 -159858733 - AluJo SINE Alu -9 303 1 22 0 0 0 chrX 2741199 2741221 -159858709 + AT_rich Low_complexity Low_complexity 1 22 0 337 273 66 62 chrX 2741584 2741811 -159858119 - L2 LINE L2 0 3313 3086 1105 54 15 25 chrX 2742300 2742508 -159857422 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 682 99 60 12 chrX 2742548 2742956 -159856974 + (TAGA)n Simple_repeat Simple_repeat 1 427 0 733 127 39 8 chrX 2743005 2743269 -159856661 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 369 0 0 0 chrX 2743596 2743637 -159856293 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 196 18 0 chrX 2743649 2743705 -159856225 + (TA)n Simple_repeat Simple_repeat 2 58 0 2267 157 23 43 chrX 2743718 2744158 -159855772 - Tigger2a DNA MER2_type 0 434 4 213 94 0 0 chrX 2744158 2744190 -159855740 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 366 281 75 75 chrX 2745123 2745390 -159854540 + MLT1L LTR MaLR 1 267 -348 571 210 17 0 chrX 2745963 2746082 -159853848 - MLT1B LTR MaLR -264 126 6 297 68 0 0 chrX 2746082 2746126 -159853804 + (CA)n Simple_repeat Simple_repeat 2 45 0 1907 123 39 75 chrX 2746886 2747275 -159852655 - THE1C LTR MaLR 0 375 1 1756 242 43 2 chrX 2747456 2747877 -159852053 + MLT1C LTR MaLR 1 438 -29 222 208 0 0 chrX 2748618 2748666 -159851264 + (TG)n Simple_repeat Simple_repeat 1 48 0 206 121 0 0 chrX 2749281 2749314 -159850616 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chrX 2749582 2749611 -159850319 + (TG)n Simple_repeat Simple_repeat 1 29 0 1904 173 34 3 chrX 2749863 2750216 -159849714 - MLT1A1 LTR MaLR -1 364 1 350 278 68 25 chrX 2750297 2750459 -159849471 + MLT1G LTR MaLR 5 173 -376 1220 228 80 46 chrX 2750471 2750909 -159849021 + MLT1C LTR MaLR 15 467 0 1143 253 85 27 chrX 2750909 2751308 -159848622 + MLT1G LTR MaLR 166 549 0 292 125 21 0 chrX 2752172 2752220 -159847710 - MER3 DNA MER1_type -6 203 155 1740 136 75 59 chrX 2752243 2752570 -159847360 + L1MB3 LINE L1 5542 5822 -361 1909 184 0 0 chrX 2752570 2752880 -159847050 + AluJo SINE Alu 3 312 0 1740 136 75 59 chrX 2752880 2752933 -159846997 + L1MB3 LINE L1 5822 5873 -310 1909 184 18 3 chrX 2752935 2753272 -159846658 + MER7A DNA MER2_type 7 346 0 1304 132 0 5 chrX 2753272 2753477 -159846453 + L1MB3 LINE L1 5905 6108 -75 1466 93 49 26 chrX 2753479 2753705 -159846225 + L1PB4 LINE L1 5686 5916 -240 1766 117 89 7 chrX 2753809 2754100 -159845830 + THE1B LTR MaLR 50 364 0 239 348 43 14 chrX 2754173 2754311 -159845619 - MER3 DNA MER1_type -62 147 6 1954 157 0 0 chrX 2754858 2755173 -159844757 + AluSx SINE Alu 1 315 0 277 198 26 99 chrX 2755607 2756532 -159843398 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 386 217 49 14 chrX 2755665 2755733 -159844197 + (TA)n Simple_repeat Simple_repeat 2 66 -83 2255 166 14 40 chrX 2755733 2755800 -159844130 - Tigger2a DNA MER2_type -2274 434 367 2063 128 3 0 chrX 2755800 2756089 -159843841 - AluSx SINE Alu -22 290 1 2255 166 14 40 chrX 2756089 2756467 -159843463 - Tigger2a DNA MER2_type -2341 367 1 386 217 49 14 chrX 2756467 2756541 -159843389 + (TA)n Simple_repeat Simple_repeat 66 149 0 183 281 320 8 chrX 2756779 2756907 -159843023 + MER5A DNA MER1_type 9 176 -13 922 146 18 0 chrX 2757999 2758231 -159841699 + GA-rich Low_complexity Low_complexity 1 236 0 1137 115 75 0 chrX 2758889 2759089 -159840841 - L1MA5A LINE L1 -10 6287 6073 2839 95 48 83 chrX 2759089 2759585 -159840345 - MER1A DNA MER1_type -2 527 49 462 111 0 0 chrX 2759588 2759660 -159840270 - L1MA5A LINE L1 -213 6084 6013 1031 189 0 0 chrX 2759962 2760126 -159839804 - AluJb SINE Alu -13 299 136 4192 91 22 11 chrX 2760469 2761099 -159838831 + L1PB2 LINE L1 5515 6151 0 22 0 0 0 chrX 2761511 2761533 -159838397 + AT_rich Low_complexity Low_complexity 1 22 0 2449 82 0 3 chrX 2761843 2762146 -159837784 - AluSq SINE Alu -11 302 1 315 0 0 0 chrX 2762742 2762777 -159837153 + (TG)n Simple_repeat Simple_repeat 2 36 0 258 326 119 0 chrX 2762990 2763202 -159836728 - L1MC/D LINE L1 -532 5589 5492 239 161 18 0 chrX 2763360 2763416 -159836514 + (CA)n Simple_repeat Simple_repeat 2 58 0 260 345 0 0 chrX 2763458 2763600 -159836330 + T-rich Low_complexity Low_complexity 1 142 0 286 80 40 0 chrX 2763947 2763997 -159835933 + (TA)n Simple_repeat Simple_repeat 1 52 0 2313 129 35 7 chrX 2764088 2764491 -159835439 - L1MA5A LINE L1 -10 6287 5874 301 323 33 43 chrX 2764511 2764814 -159835116 - L1MEd LINE L1 -4910 1209 910 1943 109 0 0 chrX 2764889 2765185 -159834745 - AluSx SINE Alu 0 326 31 380 241 13 0 chrX 2765365 2765444 -159834486 + MER93a LTR ERV1 1 80 -322 1130 241 16 12 chrX 2765542 2765787 -159834143 + MER93a LTR ERV1 91 336 -66 482 170 0 40 chrX 2815864 2815964 -159783966 - AluJ/FLAM SINE Alu -214 98 3 598 219 26 0 chrX 2815987 2816138 -159783792 + L1MB7 LINE L1 6009 6163 -21 1997 142 0 0 chrX 2816195 2816512 -159783418 + L1PB4 LINE L1 5839 6155 -1 1792 229 53 25 chrX 2816774 2817284 -159782646 + MER68 LTR ERV1 28 551 -11 810 159 0 0 chrX 2817500 2817626 -159782304 + FLAM_C SINE Alu 1 126 -17 1683 197 0 25 chrX 2817636 2817956 -159781974 + AluJo SINE Alu 1 312 0 2845 161 10 2 chrX 2818555 2819065 -159780865 + L1PB4 LINE L1 5634 6147 -9 2218 132 0 39 chrX 2819244 2819585 -159780345 + L1PA13 LINE L1 5791 6117 -46 2037 159 24 11 chrX 2819585 2819955 -159779975 - THE1C LTR MaLR 0 375 1 2218 132 0 39 chrX 2819955 2819999 -159779931 + L1PA13 LINE L1 6117 6161 -2 2179 125 22 5 chrX 2819999 2820346 -159779584 + L1MA5A LINE L1 5925 6297 0 225 289 26 61 chrX 2820642 2820756 -159779174 - MER68 LTR ERV1 -75 487 378 518 240 0 0 chrX 2820795 2820916 -159779014 - MER68 LTR ERV1 -273 289 169 3775 183 19 3 chrX 2822170 2822919 -159777011 - L1PB4 LINE L1 -4 6152 5392 255 197 26 40 chrX 2823016 2823092 -159776838 + L1MB7 LINE L1 5472 5546 -628 2553 198 12 54 chrX 2823110 2823791 -159776139 + L1MB7 LINE L1 5520 6171 -13 1849 204 60 20 chrX 2824664 2825124 -159774806 - MLT2B1 LTR ERVL -20 472 12 319 77 19 19 chrX 2825190 2825242 -159774688 - L1PA16 LINE L1 -14 6152 6101 1095 233 12 6 chrX 2825342 2825664 -159774266 + L1 LINE L1 4285 4608 -1538 2179 159 14 23 chrX 2826693 2827120 -159772810 + LTR23 LTR ERV1 15 437 0 261 57 0 0 chrX 2827164 2827199 -159772731 + (CA)n Simple_repeat Simple_repeat 2 36 0 2194 130 0 0 chrX 2827395 2827696 -159772234 + AluSx SINE Alu 1 301 -11 430 267 32 12 chrX 2828013 2828210 -159771720 + MER93a LTR ERV1 198 398 -5 460 186 23 0 chrX 2829322 2829408 -159770522 + AluJb SINE Alu 44 131 -181 2057 104 43 0 chrX 2829413 2829693 -159770237 + AluSx SINE Alu 1 292 -20 30 59 0 0 chrX 2829695 2829746 -159770184 + AT_rich Low_complexity Low_complexity 1 51 0 519 205 0 0 chrX 2829762 2829889 -159770041 - L1MA8 LINE L1 -22 6269 6143 1990 148 127 16 chrX 2830248 2830633 -159769297 - MSTA LTR MaLR 0 428 1 998 164 28 9 chrX 2830785 2830998 -159768932 + L1MB7 LINE L1 5954 6170 -14 21 0 0 0 chrX 2831092 2831113 -159768817 + AT_rich Low_complexity Low_complexity 1 21 0 2568 67 0 3 chrX 2831324 2831636 -159768294 + AluY SINE Alu 1 311 0 221 167 19 0 chrX 2832064 2832118 -159767812 + CT-rich Low_complexity Low_complexity 2 56 0 1502 176 11 4 chrX 2832248 2832521 -159767409 + AluJo SINE Alu 1 275 -37 236 308 26 51 chrX 2832541 2832619 -159767311 - MIR3 SINE MIR -31 177 102 180 77 0 0 chrX 2833291 2833317 -159766613 + (T)n Simple_repeat Simple_repeat 1 26 0 3549 94 0 0 chrX 2833335 2833834 -159766096 - L1PA15 LINE L1 -82 6083 5585 1681 100 19 8 chrX 2833996 2834255 -159765675 - MER41D LTR ERV1 -295 262 1 2156 239 11 0 chrX 2834369 2834846 -159765084 - MER68 LTR ERV1 -4 558 77 994 223 29 71 chrX 2834855 2835237 -159764693 + MLT1A2 LTR MaLR 9 374 0 347 231 0 39 chrX 2835237 2835319 -159764611 - MER68 LTR ERV1 -484 78 1 595 218 6 46 chrX 2835388 2835494 -159764436 - LTR34 LTR ERV1 -4 695 597 3692 107 26 35 chrX 2835494 2836099 -159763831 - MER4A LTR ERV1 0 600 1 595 218 6 46 chrX 2836099 2836166 -159763764 - LTR34 LTR ERV1 -102 597 529 866 127 76 13 chrX 2836168 2836325 -159763605 - LTR34 LTR ERV1 -328 371 205 204 40 0 0 chrX 2837877 2837902 -159762028 + (CA)n Simple_repeat Simple_repeat 2 26 0 280 211 30 8 chrX 2837934 2838067 -159761863 + (TA)n Simple_repeat Simple_repeat 1 136 0 36 53 0 0 chrX 2838074 2838131 -159761799 + AT_rich Low_complexity Low_complexity 1 57 0 2386 161 57 0 chrX 2838658 2839094 -159760836 + LOR1b LTR ERV1 1 461 0 416 183 11 0 chrX 2840726 2840819 -159759111 + GA-rich Low_complexity Low_complexity 3 96 0 270 0 0 0 chrX 2841910 2841940 -159757990 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2501 137 16 56 chrX 2842364 2842810 -159757120 - MSTA LTR MaLR 0 428 1 1374 107 11 10 chrX 2843353 2843607 -159756323 - Tigger2 DNA MER2_type -171 2547 3 3410 142 7 12 chrX 2843827 2844426 -159755504 - L1PB4 LINE L1 -3 6153 5558 2559 102 23 0 chrX 2844432 2844786 -159755144 + THE1B LTR MaLR 1 362 -2 3589 115 11 15 chrX 2845719 2846248 -159753682 + MER1A DNA MER1_type 1 527 0 366 287 0 0 chrX 2846630 2846731 -159753199 + MER5A DNA MER1_type 9 109 -80 180 0 0 0 chrX 2847596 2847616 -159752314 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2171 98 30 3 chrX 2847801 2848097 -159751833 + AluSx SINE Alu 1 304 -8 1522 224 6 3 chrX 2848303 2848651 -159751279 + L1PA16 LINE L1 5796 6144 -22 1844 158 10 7 chrX 2849599 2849890 -159750040 + AluJo SINE Alu 1 292 -20 322 221 12 12 chrX 2849946 2850032 -159749898 - L1ME4a LINE L1 -70 6051 5966 331 132 88 0 chrX 2850104 2850172 -159749758 - L1PA16 LINE L1 0 6166 6093 1983 129 25 0 chrX 2850172 2850489 -159749441 + L1PA16 LINE L1 5771 6095 -71 422 158 184 44 chrX 2850646 2850804 -159749126 - MER45 DNA AcHobo 0 1581 1402 311 253 53 0 chrX 2850816 2850911 -159749019 - L1MA9 LINE L1 -32 6280 6181 2759 200 20 2 chrX 2850912 2851507 -159748423 - L1MA9 LINE L1 -230 6082 5477 715 199 78 15 chrX 2851510 2851716 -159748214 + L1 LINE L1 5063 5281 -865 1895 113 154 6 chrX 2851733 2852077 -159747853 - MSTA LTR MaLR -33 395 1 420 144 117 27 chrX 2852077 2852188 -159747742 + L1M LINE L1 5275 5395 -917 1370 184 65 16 chrX 2852188 2852509 -159747421 + MSTB1 LTR MaLR 1 337 -95 3711 81 2 2 chrX 2852640 2853132 -159746798 - LTR3b LTR ERVK -8 492 1 254 167 0 0 chrX 2853132 2853180 -159746750 - L1MA4 LINE L1 -217 6083 6036 1795 163 10 3 chrX 2853180 2853469 -159746461 + AluJo SINE Alu 5 295 -17 641 373 86 9 chrX 2853548 2853977 -159745953 - L2 LINE L2 -1689 1625 1164 476 315 51 35 chrX 2854165 2854422 -159745508 - L2 LINE L2 -2200 1114 854 560 211 0 0 chrX 2854499 2854622 -159745308 + L1MB4 LINE L1 6058 6180 0 1833 150 3 10 chrX 2854656 2854949 -159744981 + AluJo SINE Alu 1 291 -21 234 91 0 0 chrX 2854949 2854982 -159744948 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1958 149 0 3 chrX 2856287 2856588 -159743342 - AluJb SINE Alu -8 304 5 314 195 49 12 chrX 2856768 2856850 -159743080 + MLT1I LTR MaLR 318 402 -7 2460 46 0 13 chrX 2856944 2857249 -159742681 + AluY SINE Alu 1 301 -10 297 0 0 0 chrX 2857355 2857388 -159742542 + (CA)n Simple_repeat Simple_repeat 2 34 0 998 68 28 11 chrX 2858638 2858814 -159741116 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 2858858 2859083 -159740847 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 2859101 2859254 -159740676 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 2859320 2859411 -159740519 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2756 163 36 0 chrX 2860093 2860596 -159739334 + L1MB3 LINE L1 5653 6173 -10 194 0 0 37 chrX 2862352 2862379 -159737551 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 2863077 2863110 -159736820 + AT_rich Low_complexity Low_complexity 1 33 0 3690 135 30 3 chrX 2863245 2863881 -159736049 + MER39B LTR ERV1 1 653 0 3731 106 12 9 chrX 2863917 2864481 -159735449 - L1PA16 LINE L1 -9 6157 5592 1187 162 194 20 chrX 2865073 2865320 -159734610 + AluJo SINE Alu 1 290 -12 348 164 0 0 chrX 2865320 2865387 -159734543 + G-rich Low_complexity Low_complexity 1 67 0 331 111 93 52 chrX 2865423 2865595 -159734335 + GA-rich Low_complexity Low_complexity 2 180 0 441 305 0 0 chrX 2865718 2865846 -159734084 - MER77 LTR ERV1 0 605 478 877 181 64 5 chrX 2865851 2866055 -159733875 - L1M2 LINE L1 -725 5587 5372 250 138 62 75 chrX 2866057 2866094 -159733836 + L1MA9 LINE L1 6234 6270 -42 1677 159 0 15 chrX 2866094 2866358 -159733572 + AluJb SINE Alu 35 294 -18 250 138 62 75 chrX 2866358 2866400 -159733530 + L1MA9 LINE L1 6270 6312 0 1274 261 55 60 chrX 2866479 2866966 -159732964 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 2868083 2868112 -159731818 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2392 108 13 35 chrX 2868158 2868530 -159731400 - THE1B LTR MaLR 0 364 1 1893 169 0 10 chrX 2868626 2868940 -159730990 + AluJb SINE Alu 1 311 -1 875 219 86 60 chrX 2869108 2869512 -159730418 - MLT1C LTR MaLR -6 618 45 278 266 32 13 chrX 2870413 2870571 -159729359 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 2870527 2870634 -159729296 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 2870634 2870766 -159729164 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 2870813 2870942 -159728988 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 2871159 2871188 -159728742 + AT_rich Low_complexity Low_complexity 1 29 0 2159 109 46 57 chrX 2873045 2873413 -159726517 + THE1B LTR MaLR 1 364 0 288 53 0 0 chrX 2873420 2873458 -159726472 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5059 130 14 1 chrX 2873462 2874292 -159725638 + L1PB4 LINE L1 5314 6154 -2 272 301 194 25 chrX 2875008 2875204 -159724726 - MIR SINE MIR -22 240 12 1775 173 0 10 chrX 2876126 2876426 -159723504 - AluJb SINE Alu -15 297 1 2348 160 17 72 chrX 2876666 2877209 -159722721 - L1MA7 LINE L1 -6 6285 5773 213 39 0 0 chrX 2878477 2878503 -159721427 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 786 205 16 21 chrX 2878955 2879145 -159720785 - MER20 DNA MER1_type -1 218 30 248 194 0 90 chrX 2879130 2879197 -159720733 + MER20 DNA MER1_type 6 66 -153 * 198 0 0 0 chrX 2879374 2879396 -159720534 + (A)n Simple_repeat Simple_repeat 1 22 0 197 282 94 60 chrX 2880077 2880226 -159719704 + MER5B DNA MER1_type 19 172 -6 2060 141 0 3 chrX 2880453 2880752 -159719178 - AluSx SINE Alu -14 298 1 248 120 20 0 chrX 2880867 2880917 -159719013 + (TA)n Simple_repeat Simple_repeat 2 52 0 289 309 197 0 chrX 2881551 2881729 -159718201 + LTR16A1 LTR ERVL 245 457 0 3137 128 59 20 chrX 2881772 2882279 -159717651 + MER1A DNA MER1_type 1 527 0 68 48 0 0 chrX 2882371 2882474 -159717456 + AT_rich Low_complexity Low_complexity 1 103 0 1400 108 0 0 chrX 2882525 2882729 -159717201 - L1PA14 LINE L1 -1 6160 5957 180 275 11 110 chrX 2883194 2883285 -159716645 - MER5A DNA MER1_type -92 97 16 358 273 64 6 chrX 2883449 2883621 -159716309 + Charlie5 DNA MER1_type 553 734 -1878 4886 84 17 0 chrX 2883621 2884311 -159715619 - L1PA13 LINE L1 -23 6140 5439 920 239 42 72 chrX 2884311 2884713 -159715217 + Charlie5 DNA MER1_type 722 1111 -1501 180 0 0 0 chrX 2884912 2884932 -159714998 + (A)n Simple_repeat Simple_repeat 1 20 0 3374 100 13 7 chrX 2885427 2885967 -159713963 + MER41B LTR ERV1 1 543 -92 32 81 0 0 chrX 2886204 2886278 -159713652 + AT_rich Low_complexity Low_complexity 1 74 0 261 250 11 0 chrX 2886281 2886395 -159713535 + (TA)n Simple_repeat Simple_repeat 1 115 0 3900 154 4 1 chrX 2886464 2887140 -159712790 + L1PA15 LINE L1 5462 6139 -26 334 98 0 0 chrX 2888099 2888160 -159711770 - L1MA2 LINE L1 0 6304 6244 434 189 55 24 chrX 2888473 2888600 -159711330 - MER53 DNA DNA -36 153 23 2475 168 8 3 chrX 2889074 2889573 -159710357 + L1PA16 LINE L1 5616 6117 -39 3731 128 24 0 chrX 2889674 2890297 -159709633 + L1PA13 LINE L1 5552 6188 0 540 152 0 22 chrX 2890323 2890415 -159709515 + AluJo SINE Alu 1 90 -222 718 98 9 0 chrX 2890417 2890529 -159709401 - L1PA13 LINE L1 -165 5998 5886 1489 136 0 21 chrX 2890529 2890764 -159709166 + AluJo SINE Alu 82 311 -1 213 100 60 0 chrX 2890798 2890848 -159709082 + GA-rich Low_complexity Low_complexity 1 53 0 233 221 15 0 chrX 2891502 2891570 -159708360 + (CATA)n Simple_repeat Simple_repeat 2 70 0 40 83 0 0 chrX 2891612 2891708 -159708222 + AT_rich Low_complexity Low_complexity 1 96 0 23 0 0 0 chrX 2891746 2891769 -159708161 + AT_rich Low_complexity Low_complexity 1 23 0 293 216 43 14 chrX 2891798 2891937 -159707993 + (TA)n Simple_repeat Simple_repeat 1 143 0 257 288 12 31 chrX 2893040 2893200 -159706730 + L1M4 LINE L1 3325 3481 -2665 334 345 18 36 chrX 2893273 2893441 -159706489 + L1M4 LINE L1 3503 3667 -2479 694 151 8 8 chrX 2894189 2894315 -159705615 + MER41B LTR ERV1 510 635 0 * 3215 239 40 45 chrX 2894315 2894456 -159705474 - Charlie5 DNA MER1_type -1359 1265 1125 2232 121 7 0 chrX 2894456 2894761 -159705169 - AluSx SINE Alu -3 309 3 3215 239 40 45 chrX 2894761 2895890 -159704040 - Charlie5 DNA MER1_type -1499 1125 1 388 270 63 38 chrX 2895890 2896049 -159703881 + L1ME1 LINE L1 2057 2219 -4177 419 276 65 47 chrX 2896051 2896158 -159703772 + L1ME1 LINE L1 2182 2286 -3929 321 94 0 0 chrX 2896158 2896211 -159703719 - L1PA15 LINE L1 -2 6163 6111 419 276 65 47 chrX 2896211 2896443 -159703487 + L1ME1 LINE L1 2286 2527 -3688 1593 275 85 24 chrX 2896568 2897969 -159701961 + L1ME1 LINE L1 3068 4577 -1638 1340 239 75 34 chrX 2897966 2898562 -159701368 + L1ME1 LINE L1 5301 5919 -316 * 30 0 0 0 chrX 2898568 2898598 -159701332 + AT_rich Low_complexity Low_complexity 1 30 0 424 135 116 9 chrX 2898608 2898717 -159701213 - L1MA5A LINE L1 -159 6138 6042 2946 141 32 2 chrX 2898717 2899214 -159700716 - MER75 DNA T2_type -2 512 1 424 135 116 9 chrX 2899214 2899900 -159700030 - L1MA5A LINE L1 -255 6042 5262 600 257 107 48 chrX 2899917 2900271 -159699659 + LTR52 LTR ERVL 42 416 -5 425 274 38 51 chrX 2900271 2900605 -159699325 + L1ME1 LINE L1 5916 6251 -2 2575 55 0 0 chrX 2900694 2901005 -159698925 - AluY SINE Alu 0 311 1 682 170 13 22 chrX 2901430 2901624 -159698306 + L1M2 LINE L1 5304 5494 -689 615 208 28 55 chrX 2901801 2901971 -159697959 - L1ME1 LINE L1 -229 5937 5775 3421 124 9 47 chrX 2901971 2902519 -159697411 - MER1A DNA MER1_type 0 527 1 615 208 28 55 chrX 2902519 2902603 -159697327 - L1ME1 LINE L1 -391 5775 5690 * 1940 142 12 31 chrX 2902577 2902971 -159696959 + L1M2 LINE L1 5417 5817 -360 377 228 120 0 chrX 2902994 2903086 -159696844 - MLT1E LTR MaLR -142 451 349 447 267 73 27 chrX 2903164 2903314 -159696616 - MLT1E LTR MaLR -435 158 2 2362 101 48 25 chrX 2904005 2904361 -159695569 + THE1B LTR MaLR 1 364 0 1550 185 15 4 chrX 2904557 2904827 -159695103 - AluJo SINE Alu -39 273 1 749 133 23 0 chrX 2906494 2906622 -159693308 + L1PB4 LINE L1 5652 5782 -374 1717 188 6 6 chrX 2906747 2907077 -159692853 + L1PB4 LINE L1 5825 6154 -2 1803 174 0 3 chrX 2907746 2908033 -159691897 + AluJb SINE Alu 1 286 -26 502 257 72 7 chrX 2908615 2908767 -159691163 + MLT1E3 LTR MaLR 91 252 -341 1323 153 0 19 chrX 2908785 2909001 -159690929 + AluJo SINE Alu 95 306 -6 838 199 0 20 chrX 2909001 2909152 -159690778 + AluJb SINE Alu 135 282 -30 666 264 46 8 chrX 2909216 2909455 -159690475 + MLT1E3 LTR MaLR 377 624 0 2144 120 3 0 chrX 2909655 2909947 -159689983 - AluSx SINE Alu -6 306 14 204 188 0 0 chrX 2909949 2909981 -159689949 + polypyrimidine Low_complexity Low_complexity 1 32 0 1575 166 24 28 chrX 2910068 2910199 -159689731 + AluJo SINE Alu 1 131 -181 207 0 0 0 chrX 2910199 2910222 -159689708 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1575 166 24 28 chrX 2910222 2910379 -159689551 + AluJo SINE Alu 131 288 -24 2334 81 17 0 chrX 2910471 2910766 -159689164 - AluSg SINE Alu -10 300 1 285 310 41 53 chrX 2911270 2911441 -159688489 - MIR SINE MIR -74 188 20 3704 135 17 2 chrX 2911456 2912041 -159687889 - L1PA16 LINE L1 -9 6157 5564 1373 191 74 83 chrX 2912690 2912958 -159686972 - MLT1C LTR MaLR -4 463 194 199 54 54 0 chrX 2912958 2912995 -159686935 + A-rich Low_complexity Low_complexity 2 40 0 1579 171 15 7 chrX 2913003 2913277 -159686653 - AluJo SINE Alu -36 276 1 1373 191 74 83 chrX 2913277 2913433 -159686497 - MLT1C LTR MaLR -280 187 34 1701 173 35 0 chrX 2913666 2913783 -159686147 + AluJo SINE Alu 1 112 -200 1022 101 11 17 chrX 2913783 2913961 -159685969 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1701 173 35 0 chrX 2913961 2914132 -159685798 + AluJo SINE Alu 112 299 -13 1231 193 51 0 chrX 2915896 2916170 -159683760 - L1MA8 LINE L1 -325 5966 5679 678 188 101 111 chrX 2916170 2916458 -159683472 + L1MA9 LINE L1 6006 6290 -22 509 125 0 0 chrX 2916473 2916545 -159683385 + AluJ/FRAM SINE Alu 217 288 -24 1066 238 87 67 chrX 2916783 2917291 -159682639 + MER77 LTR ERV1 81 598 -7 1280 245 85 32 chrX 2917877 2918053 -159681877 - L1MC4a LINE L1 -614 5560 5666 1800 168 52 19 chrX 2918053 2918416 -159681514 - THE1C LTR MaLR 0 375 1 1280 245 85 32 chrX 2918416 2918828 -159681102 - L1MC4a LINE L1 -507 5667 5278 6940 53 3 0 chrX 2919344 2920670 -159679260 - L1PA7 LINE L1 -3 6151 4816 7454 89 9 4 chrX 2920670 2921795 -159678135 + L1P LINE L1 3648 4778 -1368 885 217 0 0 chrX 2921881 2922033 -159677897 - FRAM SINE Alu -25 151 1 1450 265 38 36 chrX 2922201 2922755 -159677175 - MLT1E2 LTR MaLR -31 595 41 351 238 40 0 chrX 2922913 2923014 -159676916 - MLT1D LTR MaLR -400 105 1 4210 101 12 71 chrX 2923052 2923784 -159676146 + L1PB3 LINE L1 5464 6152 -2 2239 133 0 0 chrX 2924067 2924376 -159675554 + AluSx SINE Alu 1 309 -3 1578 173 49 12 chrX 2924452 2924798 -159675132 - L1MA7 LINE L1 -100 6191 5833 808 171 0 0 chrX 2924879 2925008 -159674922 + FLAM_A SINE Alu 1 129 -4 538 83 0 0 chrX 2925009 2925093 -159674837 + L1PB1 LINE L1 6066 6149 -2 2882 84 17 0 chrX 2925960 2926376 -159673554 - L1PA12 LINE L1 -389 5785 5363 2671 69 40 8 chrX 2926376 2926740 -159673190 + L1PA12 LINE L1 5779 6165 -3 225 196 0 0 chrX 2926742 2926788 -159673142 + (TA)n Simple_repeat Simple_repeat 2 47 0 189 74 0 0 chrX 2926788 2926815 -159673115 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 * 513 0 0 0 chrX 2926814 2926871 -159673059 + (TG)n Simple_repeat Simple_repeat 2 58 0 353 237 26 66 chrX 2926879 2927031 -159672899 + MER101 LTR ERV1 298 443 -31 733 175 0 0 chrX 2927624 2927738 -159672192 + FLAM_C SINE Alu 5 118 -15 23 0 0 0 chrX 2927738 2927761 -159672169 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 2927789 2927812 -159672118 + AT_rich Low_complexity Low_complexity 1 23 0 247 235 20 10 chrX 2928995 2929093 -159670837 + GA-rich Low_complexity Low_complexity 2 100 0 1559 148 22 25 chrX 2929115 2929392 -159670538 + L1PB4 LINE L1 5876 6151 -5 21 36 0 0 chrX 2929546 2929574 -159670356 + AT_rich Low_complexity Low_complexity 1 28 0 241 167 17 17 chrX 2930054 2930114 -159669816 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1724 194 12 0 chrX 2930145 2930480 -159669450 - MER7A DNA MER2_type -9 337 1 532 199 7 7 chrX 2930488 2930634 -159669296 + (TCCA)n Simple_repeat Simple_repeat 4 149 0 188 184 20 0 chrX 2931484 2931533 -159668397 + CT-rich Low_complexity Low_complexity 1 50 0 * 379 236 6 6 chrX 2931532 2931710 -159668220 + (CA)n Simple_repeat Simple_repeat 1 178 0 4025 130 57 28 chrX 2932195 2932919 -159667011 - L1PA16 LINE L1 -3 6163 5419 1358 219 77 87 chrX 2933042 2933528 -159666402 - LTR38B LTR ERV1 -18 592 112 2144 120 3 0 chrX 2933528 2933829 -159666101 + AluSx SINE Alu 1 302 -10 1358 219 77 87 chrX 2933829 2933940 -159665990 - LTR38B LTR ERV1 -498 112 1 3311 127 42 14 chrX 2934009 2934575 -159665355 + L1MA5A LINE L1 5710 6291 -6 22 0 0 0 chrX 2934575 2934597 -159665333 + AT_rich Low_complexity Low_complexity 1 22 0 3203 179 13 24 chrX 2934599 2935271 -159664659 + L1MB3 LINE L1 5509 6173 -10 618 220 17 95 chrX 2935619 2935860 -159664070 + MER96B DNA MER1_type? 2 223 -194 810 192 11 16 chrX 2935938 2936120 -159663810 + MER20 DNA MER1_type 36 216 -3 2331 73 7 20 chrX 2936597 2936898 -159663032 + AluY SINE Alu 1 297 -14 4757 133 18 2 chrX 2937556 2938389 -159661541 - L1PB3 LINE L1 -4 6150 5305 541 266 28 0 chrX 2939156 2939299 -159660631 - MER20 DNA MER1_type -65 154 8 1893 85 4 4 chrX 2939299 2939570 -159660360 + L1PA13 LINE L1 5666 5936 -227 879 204 0 0 chrX 2940289 2940608 -159659322 + (ATG)n Simple_repeat Simple_repeat 1 319 0 2018 119 26 10 chrX 2940911 2941213 -159658717 - AluSx SINE Alu -5 307 1 23 0 0 0 chrX 2941919 2941942 -159657988 + AT_rich Low_complexity Low_complexity 1 23 0 319 397 57 10 chrX 2943375 2943569 -159656361 - MIR SINE MIR -40 222 20 1137 236 81 17 chrX 2944444 2944741 -159655189 - MSTD LTR MaLR 0 396 81 26 0 0 0 chrX 2944741 2944767 -159655163 + AT_rich Low_complexity Low_complexity 1 26 0 1721 196 21 0 chrX 2944773 2945058 -159654872 - AluJo SINE Alu -21 291 1 286 206 9 92 chrX 2945229 2945457 -159654473 + MSTB1 LTR MaLR 224 432 0 225 94 0 0 chrX 2945992 2946024 -159653906 + (TA)n Simple_repeat Simple_repeat 2 33 0 327 332 56 42 chrX 2946036 2946250 -159653680 - MIR SINE MIR -15 247 31 1253 210 41 0 chrX 2946401 2946696 -159653234 - L1MA4 LINE L1 -11 6289 5983 1960 148 127 16 chrX 2946726 2947111 -159652819 - MSTA LTR MaLR 0 428 1 180 0 0 0 chrX 2947212 2947232 -159652698 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1102 133 49 18 chrX 2947580 2947806 -159652124 - L1MA8 LINE L1 -86 6205 5973 606 195 32 0 chrX 2947839 2947962 -159651968 + MER20 DNA MER1_type 93 219 0 2069 125 6 3 chrX 2948166 2948477 -159651453 + AluSx SINE Alu 1 312 0 364 133 235 0 chrX 2948587 2948685 -159651245 + L1MB7 LINE L1 5841 5961 -223 2209 193 52 9 chrX 2948994 2949440 -159650490 - MER70A LTR ERVL -7 465 1 1685 174 3 11 chrX 2950316 2950598 -159649332 - AluJo SINE Alu -1 311 32 214 370 28 28 chrX 2950999 2951107 -159648823 - MIR SINE MIR -152 110 3 1418 186 127 28 chrX 2951250 2951643 -159648287 + MSTB1 LTR MaLR 1 432 0 392 182 0 0 chrX 2952173 2952239 -159647691 - MER5A DNA MER1_type -123 66 1 362 281 91 39 chrX 2952342 2952573 -159647357 + MLT1K LTR MaLR 346 588 0 3488 15 0 0 chrX 2953042 2953441 -159646489 + L1PA2 LINE L1 5756 6154 -1 288 0 0 0 chrX 2953835 2953867 -159646063 + (CA)n Simple_repeat Simple_repeat 1 32 0 639 336 34 0 chrX 2954563 2954771 -159645159 + MIR SINE MIR 30 244 -18 378 87 130 0 chrX 2955013 2955082 -159644848 - MADE1 DNA Mariner 0 80 3 * 1702 231 61 9 chrX 2955082 2955538 -159644392 - MLT1D LTR MaLR -20 485 6 287 152 0 0 chrX 2955546 2955592 -159644338 - MLT1D LTR MaLR -457 48 3 284 128 21 0 chrX 2955595 2955642 -159644288 - MLT1D LTR MaLR -455 50 3 300 125 42 0 chrX 2955645 2955693 -159644237 - MLT1D LTR MaLR -455 50 1 274 167 21 0 chrX 2955694 2955742 -159644188 - MLT1D LTR MaLR -455 50 2 269 146 42 0 chrX 2955786 2955834 -159644096 - MLT1D LTR MaLR -455 50 1 248 78 20 59 chrX 2955836 2955887 -159644043 - MLT1D LTR MaLR -456 49 1 232 329 85 0 chrX 2955955 2956037 -159643893 - MIR SINE MIR -12 250 162 865 209 5 0 chrX 2956315 2956502 -159643428 + L1M2 LINE L1 5328 5515 -797 1453 233 47 13 chrX 2957013 2957190 -159642740 - MLT1C LTR MaLR -3 464 294 2315 204 28 22 chrX 2957190 2957699 -159642231 - MLT2B2 LTR ERVL 0 515 4 1453 233 47 13 chrX 2957699 2957968 -159641962 - MLT1C LTR MaLR -173 294 3 2187 203 25 48 chrX 2958942 2959425 -159640505 + MER70A LTR ERVL 1 472 0 2174 176 21 28 chrX 2960331 2960768 -159639162 + Tigger2a DNA MER2_type 1 434 0 3925 119 5 5 chrX 2960862 2961444 -159638486 + L1PA15 LINE L1 5579 6160 -5 2413 211 61 2 chrX 2961803 2961841 -159638089 - MLT2B1 LTR ERVL -2 518 484 925 69 34 11 chrX 2961841 2962016 -159637914 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 2413 211 61 2 chrX 2962016 2962466 -159637464 - MLT2B1 LTR ERVL -36 484 1 508 249 10 58 chrX 2962545 2962721 -159637209 + MER20 DNA MER1_type 1 184 -35 429 66 0 0 chrX 2962721 2962782 -159637148 + (CA)n Simple_repeat Simple_repeat 2 62 0 237 33 0 0 chrX 2962781 2962811 -159637119 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 508 249 10 58 chrX 2962782 2962839 -159637091 + MER20 DNA MER1_type 184 195 -24 913 258 19 19 chrX 2963112 2963372 -159636558 + MLT1D LTR MaLR 246 505 0 1141 187 34 8 chrX 2964003 2964238 -159635692 - MSTB1 LTR MaLR 0 432 192 458 117 68 0 chrX 2964238 2964341 -159635589 + CT-rich Low_complexity Low_complexity 4 113 0 1944 150 6 31 chrX 2964359 2964679 -159635251 - AluJb SINE Alu 0 312 1 892 246 5 0 chrX 2964680 2964875 -159635055 - MSTB1 LTR MaLR -230 196 1 269 287 75 11 chrX 2965206 2965300 -159634630 + MLT1I LTR MaLR 160 259 -150 1528 197 0 3 chrX 2965393 2965703 -159634227 - AluSc SINE Alu 0 309 1 2059 118 30 7 chrX 2967254 2967551 -159632379 - AluSx SINE Alu -8 304 1 24 53 0 0 chrX 2968214 2968252 -159631678 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chrX 2968252 2968279 -159631651 + (CA)n Simple_repeat Simple_repeat 2 28 0 1880 167 0 16 chrX 2968689 2969006 -159630924 + AluSx SINE Alu 1 312 0 236 330 33 11 chrX 2970170 2970261 -159629669 - MIR SINE MIR -160 102 10 646 221 37 12 chrX 2970505 2970668 -159629262 - MLT1A1 LTR MaLR 0 374 208 1309 197 0 9 chrX 2970723 2970974 -159628956 - AluJo SINE Alu 0 309 61 775 176 7 7 chrX 2970979 2971121 -159628809 - MLT1A1 LTR MaLR -214 151 10 233 274 0 0 chrX 2971497 2971559 -159628371 + MER68 LTR ERV1 236 297 -265 271 128 51 13 chrX 2971991 2972069 -159627861 + GA-rich Low_complexity Low_complexity 2 82 0 1739 132 42 4 chrX 2973126 2973391 -159626539 + AluSg SINE Alu 35 309 -1 2095 110 6 25 chrX 2973715 2974033 -159625897 + AluSx SINE Alu 1 312 0 889 249 93 22 chrX 2974226 2974542 -159625388 - MSTD LTR MaLR 0 396 1 21 0 0 0 chrX 2974959 2974980 -159624950 + AT_rich Low_complexity Low_complexity 1 21 0 206 216 27 14 chrX 2975109 2975183 -159624747 + (TA)n Simple_repeat Simple_repeat 2 76 0 25 0 0 0 chrX 2975421 2975446 -159624484 + AT_rich Low_complexity Low_complexity 1 25 0 363 167 24 24 chrX 2975491 2975575 -159624355 + L1MC2 LINE L1 6253 6336 -8 1959 217 102 15 chrX 2976098 2976687 -159623243 + LTR48B LTR ERV1 3 642 -2 296 192 86 102 chrX 2976707 2976887 -159623043 - LTR49 LTR ERV1 -50 737 556 2151 216 26 56 chrX 2976887 2977457 -159622473 + MLT2B3 LTR ERVL 2 554 0 296 192 86 102 chrX 2977457 2977493 -159622437 - LTR49 LTR ERV1 -231 556 332 531 195 51 0 chrX 2977493 2977611 -159622319 - L1MB5 LINE L1 -78 6096 5973 990 136 29 15 chrX 2978226 2978432 -159621498 + L1P4 LINE L1 5138 5346 -800 1285 89 0 0 chrX 2978432 2978590 -159621340 - AluSg/x SINE Alu -8 302 145 482 133 41 0 chrX 2978600 2978698 -159621232 + L1P4 LINE L1 5338 5439 -722 242 266 134 59 chrX 2979350 2979530 -159620400 - MIR3 SINE MIR -62 146 2 324 94 0 0 chrX 2979843 2979896 -159620034 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 35 0 0 chrX 2980236 2980265 -159619665 + AT_rich Low_complexity Low_complexity 1 29 0 2057 145 0 0 chrX 2981526 2981822 -159618108 - AluSx SINE Alu -16 296 1 236 236 28 28 chrX 2981856 2981928 -159618002 - HAL1b LINE L1 -781 567 496 247 193 0 18 chrX 2982104 2982161 -159617769 + L1M4 LINE L1 2964 3019 -3127 688 225 70 5 chrX 2982298 2982485 -159617445 + L1MB7 LINE L1 5814 6012 -172 1170 141 6 6 chrX 2982486 2982663 -159617267 - AluJb SINE Alu -2 310 134 234 0 0 0 chrX 2982664 2982690 -159617240 + (TA)n Simple_repeat Simple_repeat 2 27 0 2272 90 0 26 chrX 2982690 2983002 -159616928 - AluSx SINE Alu -8 304 1 330 307 46 60 chrX 2983142 2983360 -159616570 + L1MB8 LINE L1 5955 6169 -9 1919 134 26 67 chrX 2983492 2983879 -159616051 - L1PA14 LINE L1 -3 6158 5788 1953 154 27 29 chrX 2983937 2984313 -159615617 - THE1C LTR MaLR 0 375 1 207 0 0 0 chrX 2984546 2984569 -159615361 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1301 33 6 22 chrX 2984595 2984777 -159615153 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 293 118 20 0 chrX 2984777 2984828 -159615102 + GA-rich Low_complexity Low_complexity 3 54 0 1927 104 0 7 chrX 2984952 2985241 -159614689 - L1PA15 LINE L1 0 6165 5879 290 36 455 0 chrX 2985933 2985988 -159613942 + MADE1 DNA Mariner 1 80 0 2460 133 5 5 chrX 2986398 2986783 -159613147 - L1PA16 LINE L1 -9 6157 5773 1015 233 96 60 chrX 2987733 2988180 -159611750 - MLT1C LTR MaLR 0 467 5 753 218 110 47 chrX 2988195 2988512 -159611418 - MLT1C LTR MaLR -123 344 8 719 215 89 39 chrX 2988529 2988851 -159611079 - MLT1C LTR MaLR -122 345 1 1886 175 23 0 chrX 2988871 2989174 -159610756 + AluJo SINE Alu 3 312 0 250 325 39 0 chrX 2989308 2989385 -159610545 + MIR3 SINE MIR 105 184 -24 907 228 43 63 chrX 2989830 2990178 -159609752 + MLT2B1 LTR ERVL 6 369 -45 537 132 25 0 chrX 2990178 2990299 -159609631 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 352 103 75 0 chrX 2990398 2990505 -159609425 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 191 44 89 0 chrX 2990577 2990622 -159609308 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 295 165 31 21 chrX 2990775 2990872 -159609058 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 296 175 0 0 chrX 2990872 2990935 -159608995 + MLT2B1 LTR ERVL 458 520 0 202 101 72 0 chrX 2991254 2991323 -159608607 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 189 213 0 0 chrX 2992273 2992320 -159607610 + CT-rich Low_complexity Low_complexity 3 49 0 182 146 0 24 chrX 2992337 2992378 -159607552 + (TTTC)n Simple_repeat Simple_repeat 4 43 0 289 187 28 19 chrX 2992426 2992533 -159607397 + CT-rich Low_complexity Low_complexity 2 109 0 1229 132 5 18 chrX 2993967 2994186 -159605744 + L1PB2 LINE L1 5734 5949 -202 247 259 49 98 chrX 2994347 2994388 -159605542 - L2 LINE L2 -1292 2022 1981 2213 122 0 0 chrX 2994388 2994682 -159605248 + AluSx SINE Alu 3 296 -16 247 259 49 98 chrX 2994682 2994783 -159605147 - L2 LINE L2 -1333 1981 1887 462 250 93 56 chrX 2995107 2995251 -159604679 + L1MC4 LINE L1 7750 7887 -155 393 22 0 0 chrX 2995251 2995297 -159604633 + (TG)n Simple_repeat Simple_repeat 1 46 0 462 250 93 56 chrX 2995297 2995420 -159604510 + L1MC4 LINE L1 7887 8027 -15 6752 92 22 4 chrX 2995784 2997509 -159602421 + L1PA8 LINE L1 4425 6168 -4 1898 131 10 74 chrX 2999209 2999387 -159600543 + MLT1B LTR MaLR 2 190 -206 2166 96 4 0 chrX 2999387 2999701 -159600229 + AluY SINE Alu 1 315 0 1898 131 10 74 chrX 2999701 2999715 -159600215 + MLT1B LTR MaLR 190 203 -193 2359 92 3 0 chrX 2999715 3000021 -159599909 + AluSp SINE Alu 1 307 -6 1898 131 10 74 chrX 3000021 3000243 -159599687 + MLT1B LTR MaLR 203 396 0 551 198 16 2 chrX 3000243 3000436 -159599494 + MLT1B LTR MaLR 158 390 0 351 94 0 0 chrX 3000530 3000583 -159599347 - MLT2A2 LTR ERVL -2 451 399 240 214 0 0 chrX 3000584 3000640 -159599290 + (TA)n Simple_repeat Simple_repeat 2 57 0 2949 77 14 22 chrX 3000640 3001056 -159598874 - MLT2A2 LTR ERVL -40 413 1 612 243 145 26 chrX 3001440 3001744 -159598186 + MLT1D LTR MaLR 22 361 -144 356 119 34 0 chrX 3001770 3001829 -159598101 - MLT2A2 LTR ERVL -136 317 257 1088 243 66 30 chrX 3001841 3002248 -159597682 + MLT1C LTR MaLR 46 467 0 189 339 160 16 chrX 3002545 3002852 -159597078 - L2 LINE L2 -2330 984 634 521 175 35 9 chrX 3003441 3003555 -159596375 - L1MB5 LINE L1 -8 6166 6050 1574 92 4 31 chrX 3004434 3004694 -159595236 + L1MA1 LINE L1 5978 6230 -72 2389 128 0 22 chrX 3005199 3005567 -159594363 + THE1B LTR MaLR 1 360 -4 616 246 134 45 chrX 3005872 3006185 -159593745 + MLT1C LTR MaLR 5 345 -122 1249 215 61 86 chrX 3006199 3006674 -159593256 + MLT1C LTR MaLR 5 467 0 21 36 0 0 chrX 3006720 3006748 -159593182 + AT_rich Low_complexity Low_complexity 1 28 0 4652 205 37 6 chrX 3006786 3008116 -159591814 + L1MC1 LINE L1 4897 6259 -74 781 271 104 26 chrX 3008171 3008555 -159591375 - MLT1C LTR MaLR -53 414 1 1915 205 8 51 chrX 3009633 3009772 -159590158 + L1MB5 LINE L1 5695 5838 -336 1811 167 26 13 chrX 3009772 3010078 -159589852 - AluJo SINE Alu -2 310 1 1915 205 8 51 chrX 3010078 3010430 -159589500 + L1MB5 LINE L1 5838 6165 -9 201 147 0 0 chrX 3010462 3010496 -159589434 + (A)n Simple_repeat Simple_repeat 1 34 0 300 269 170 20 chrX 3010701 3010845 -159589085 + MER5A DNA MER1_type 14 189 0 1836 151 30 10 chrX 3011485 3011969 -159587961 + AluJo SINE Alu 1 312 0 1264 94 0 0 chrX 3011770 3012091 -159587839 + (GAAA)n Simple_repeat Simple_repeat 1 321 0 341 305 37 63 chrX 3012466 3012656 -159587274 + L1M4 LINE L1 2724 2908 -3238 1948 179 3 0 chrX 3012710 3013012 -159586918 + AluJo SINE Alu 1 303 -9 288 0 0 0 chrX 3013012 3013044 -159586886 + (TA)n Simple_repeat Simple_repeat 2 33 0 255 202 11 180 chrX 3013303 3013486 -159586444 - MLT1H LTR MaLR -395 154 3 221 92 92 0 chrX 3013574 3013650 -159586280 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 975 114 17 6 chrX 3013663 3013838 -159586092 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 696 139 17 17 chrX 3013877 3014057 -159585873 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chrX 3014156 3014184 -159585746 + AT_rich Low_complexity Low_complexity 1 28 0 3146 193 61 8 chrX 3014456 3015212 -159584718 + L1MA9 LINE L1 5489 6284 -28 183 159 0 72 chrX 3016478 3016547 -159583383 + CT-rich Low_complexity Low_complexity 4 67 0 201 320 67 0 chrX 3017195 3017270 -159582660 + polypurine Low_complexity Low_complexity 3 82 0 275 49 24 0 chrX 3017345 3017386 -159582544 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 2072 94 0 0 chrX 3018089 3018354 -159581576 + AluSq SINE Alu 1 265 -48 189 0 0 0 chrX 3018390 3018411 -159581519 + (TAA)n Simple_repeat Simple_repeat 2 22 0 360 0 0 0 chrX 3018511 3018551 -159581379 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 292 322 6 49 chrX 3218727 3218910 -159381020 + G-rich Low_complexity Low_complexity 1 175 0 1426 142 103 36 chrX 3219961 3220181 -159379749 - MSTA LTR MaLR -9 419 172 2504 53 3 0 chrX 3220181 3220483 -159379447 - AluY SINE Alu -7 304 2 1426 142 103 36 chrX 3220483 3220564 -159379366 - MSTA LTR MaLR -256 172 98 2463 163 28 79 chrX 3221010 3221619 -159378311 - L1MB3 LINE L1 -4 6179 5602 1672 178 28 71 chrX 3221596 3221689 -159378241 - L1MB3 LINE L1 -1755 4391 4296 * 1937 137 46 0 chrX 3221689 3221974 -159377956 - AluSx SINE Alu -14 298 1 1672 178 28 71 chrX 3221974 3222021 -159377909 - L1MB3 LINE L1 -1850 4296 4249 1861 115 0 95 chrX 3222021 3222359 -159377571 - AluSx SINE Alu -6 306 1 1672 178 28 71 chrX 3222359 3222750 -159377180 - L1MB3 LINE L1 -1897 4249 3882 1339 118 9 5 chrX 3223252 3223464 -159376466 + THE1A LTR MaLR 86 298 -57 1400 70 0 10 chrX 3223492 3223691 -159376239 + LTR43 LTR ERV1 398 594 -8 564 105 42 0 chrX 3223706 3223801 -159376129 + L1MA10 LINE L1 6236 6334 0 305 182 0 15 chrX 3225656 3225722 -159374208 + MLT1I LTR MaLR 98 162 -492 1811 107 10 10 chrX 3225769 3226058 -159373872 - L1PA13 LINE L1 -2 6161 5873 1968 149 0 3 chrX 3226831 3227133 -159372797 - AluJb SINE Alu -7 305 5 314 195 49 12 chrX 3227313 3227395 -159372535 + MLT1I LTR MaLR 318 402 -7 2460 46 0 13 chrX 3227489 3227794 -159372136 + AluY SINE Alu 1 301 -10 297 0 0 0 chrX 3227900 3227933 -159371997 + (CA)n Simple_repeat Simple_repeat 2 34 0 998 68 28 11 chrX 3229183 3229359 -159370571 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 3229403 3229628 -159370302 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 3229646 3229799 -159370131 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 3229865 3229956 -159369974 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2756 163 36 0 chrX 3230638 3231141 -159368789 + L1MB3 LINE L1 5653 6173 -10 194 0 0 37 chrX 3232897 3232924 -159367006 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 3233622 3233655 -159366275 + AT_rich Low_complexity Low_complexity 1 33 0 3690 135 30 3 chrX 3233791 3234427 -159365503 + MER39B LTR ERV1 1 653 0 3731 106 12 9 chrX 3234463 3235027 -159364903 - L1PA16 LINE L1 -9 6157 5592 1228 158 195 16 chrX 3235619 3235865 -159364065 + AluJo SINE Alu 1 290 -12 558 148 0 0 chrX 3235865 3235966 -159363964 + (GGGGA)n Simple_repeat Simple_repeat 1 101 0 328 215 0 42 chrX 3235957 3236101 -159363829 + GA-rich Low_complexity Low_complexity 1 138 0 * 249 273 13 26 chrX 3236101 3236178 -159363752 + A-rich Low_complexity Low_complexity 1 76 0 471 289 0 0 chrX 3236261 3236389 -159363541 - MER77 LTR ERV1 0 605 478 898 176 64 5 chrX 3236394 3236598 -159363332 - L1M2 LINE L1 -725 5587 5372 250 138 62 75 chrX 3236600 3236637 -159363293 + L1MA9 LINE L1 6234 6270 -42 1677 159 0 15 chrX 3236637 3236901 -159363029 + AluJb SINE Alu 35 294 -18 250 138 62 75 chrX 3236901 3236943 -159362987 + L1MA9 LINE L1 6270 6312 0 1274 261 55 60 chrX 3237022 3237509 -159362421 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 3238626 3238655 -159361275 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2392 108 13 35 chrX 3238701 3239073 -159360857 - THE1B LTR MaLR 0 364 1 1893 169 0 10 chrX 3239169 3239483 -159360447 + AluJb SINE Alu 1 311 -1 875 219 86 60 chrX 3239652 3240056 -159359874 - MLT1C LTR MaLR -6 618 45 278 266 32 13 chrX 3240957 3241115 -159358815 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 3241071 3241178 -159358752 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 3241178 3241310 -159358620 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 3241357 3241486 -159358444 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 3241703 3241732 -159358198 + AT_rich Low_complexity Low_complexity 1 29 0 5092 135 20 7 chrX 3243562 3243588 -159356342 + L1PB4 LINE L1 5245 5269 -887 2149 109 46 57 chrX 3243588 3243955 -159355975 + THE1B LTR MaLR 1 363 -1 5092 135 20 7 chrX 3243955 3244835 -159355095 + L1PB4 LINE L1 5269 6154 -2 272 301 194 25 chrX 3245555 3245751 -159354179 - MIR SINE MIR -22 240 12 236 212 15 0 chrX 3246874 3246940 -159352990 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 2250 169 43 0 chrX 3247149 3247563 -159352367 - MSTB1 LTR MaLR 0 432 1 1049 137 6 17 chrX 3247627 3247802 -159352128 + MSTB1 LTR MaLR 259 431 -1 595 248 63 76 chrX 3248007 3248374 -159351556 + L1ME3 LINE L1 5793 6154 -8 326 320 72 11 chrX 3248537 3248718 -159351212 + L1M4 LINE L1 3239 3430 -2716 314 144 56 11 chrX 3250019 3250109 -159349821 + GA-rich Low_complexity Low_complexity 1 94 0 2163 177 60 20 chrX 3250936 3251387 -159348543 + MLT2B2 LTR ERVL 1 469 -46 378 175 32 7 chrX 3251390 3251544 -159348386 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 257 59 0 0 chrX 3251555 3251589 -159348341 + MLT2B2 LTR ERVL 480 513 -2 491 232 64 8 chrX 3252373 3252498 -159347432 + MER20 DNA MER1_type 1 132 -87 1553 71 0 0 chrX 3252580 3252776 -159347154 + MER107 DNA MER1_type 1 196 -1 2168 122 3 3 chrX 3253127 3253439 -159346491 - AluSx SINE Alu 0 312 1 618 313 85 25 chrX 3254154 3254553 -159345377 - HERV16 LTR ERVL -896 4868 4446 1569 236 115 62 chrX 3255120 3255713 -159344217 + MLT1E3 LTR MaLR 1 624 0 1828 174 124 16 chrX 3256752 3257138 -159342792 - MSTA LTR MaLR 0 428 1 1231 173 35 143 chrX 3258109 3258514 -159341416 - MLT1A1 LTR MaLR -1 364 4 370 283 28 0 chrX 3258917 3259023 -159340907 - MER81 DNA DNA -1 113 5 264 325 82 49 chrX 3259078 3259321 -159340609 - L2 LINE L2 -659 2655 2405 763 207 101 48 chrX 3260326 3260534 -159339396 - MER20 DNA MER1_type 0 219 1 384 40 0 0 chrX 3260890 3260940 -159338990 + (TG)n Simple_repeat Simple_repeat 2 51 0 574 350 84 24 chrX 3261123 3261660 -159338270 - HERV16 LTR ERVL -2448 3316 2748 528 323 85 26 chrX 3261959 3262349 -159337581 - HERV16 LTR ERVL -4223 773 361 622 310 24 0 chrX 3262653 3262866 -159337064 - HERV16 LTR ERVL -3814 1182 965 4373 141 35 16 chrX 3263022 3263831 -159336099 + L1PB4 LINE L1 5330 6153 -3 260 120 60 27 chrX 3263971 3264121 -159335809 + (TA)n Simple_repeat Simple_repeat 2 156 0 341 165 77 24 chrX 3264150 3264283 -159335647 + (TA)n Simple_repeat Simple_repeat 1 146 -33 2338 99 0 0 chrX 3264283 3264577 -159335353 - AluSg SINE Alu -16 294 1 341 165 77 24 chrX 3264577 3264613 -159335317 + (TA)n Simple_repeat Simple_repeat 146 179 0 257 128 24 64 chrX 3264617 3264742 -159335188 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 618 105 42 0 chrX 3266201 3266296 -159333634 - L1MA10 LINE L1 0 6334 6236 4113 103 10 5 chrX 3266311 3266894 -159333036 - LTR43 LTR ERV1 -8 594 9 269 206 0 16 chrX 3266896 3266959 -159332971 - L1MA10 LINE L1 -110 6224 6163 5581 113 21 7 chrX 3266990 3267758 -159332172 + MER4E LTR ERV1 1 779 0 371 127 0 56 chrX 3267761 3267832 -159332098 - L1MB1 LINE L1 -26 6163 6097 768 165 181 6 chrX 3267846 3268028 -159331902 + MER21A LTR ERV1 6 219 -712 2935 141 45 8 chrX 3268029 3268510 -159331420 + LTR1B LTR ERV1 1 499 -327 1580 183 25 28 chrX 3268510 3268952 -159330978 + LTR2B LTR ERV1 1 490 0 2782 78 0 0 chrX 3268952 3269309 -159330621 + Harlequin LTR ERV1 1 357 -6539 11339 22 0 0 chrX 3269309 3271323 -159328607 - L1PA2 LINE L1 0 6155 4142 39532 199 4 10 chrX 3271323 3278363 -159321567 + Harlequin LTR ERV1 814 7812 -1 1939 190 68 29 chrX 3278382 3278824 -159321106 + LTR2B LTR ERV1 32 490 0 898 117 114 80 chrX 3278824 3279088 -159320842 + LTR1B LTR ERV1 496 784 -1 674 227 8 0 chrX 3279129 3279261 -159320669 + MER21B LTR ERV1 279 411 -452 3008 136 54 24 chrX 3279267 3279851 -159320079 - MER4B LTR ERV1 -6 773 5 2571 143 14 24 chrX 3279857 3280278 -159319652 + MER21A LTR ERV1 506 922 -9 932 193 53 0 chrX 3280288 3280475 -159319455 + L1MB1 LINE L1 5917 6113 -76 1085 35 35 17 chrX 3281448 3281620 -159318310 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1700 160 0 7 chrX 3281621 3281896 -159318034 - AluJo SINE Alu -38 274 2 2257 106 0 0 chrX 3282070 3282372 -159317558 - AluY SINE Alu -9 302 1 2513 134 7 36 chrX 3282392 3282810 -159317120 - Tigger2a DNA MER2_type -4 430 25 210 143 0 0 chrX 3283205 3283240 -159316690 + (T)n Simple_repeat Simple_repeat 1 35 0 1852 181 0 6 chrX 3283257 3283571 -159316359 + AluJb SINE Alu 1 312 0 1030 113 0 0 chrX 3284144 3284277 -159315653 - AluSq/x SINE Alu -179 133 1 11994 110 24 4 chrX 3284345 3284734 -159315196 + L1P3 LINE L1 10 390 -6061 198 71 0 0 chrX 3284734 3284762 -159315168 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 11994 110 24 4 chrX 3284762 3286133 -159313797 + L1P3 LINE L1 390 1785 -4666 291 185 33 0 chrX 3286135 3286227 -159313703 + GA-rich Low_complexity Low_complexity 2 96 0 2203 102 0 3 chrX 3287189 3287474 -159312456 + AluSx SINE Alu 1 284 -28 511 179 18 30 chrX 3287608 3287732 -159312198 + MLT1C LTR MaLR 1 108 -359 1296 158 48 9 chrX 3287732 3287960 -159311970 - AluJo SINE Alu -75 237 1 29 47 0 0 chrX 3288134 3288177 -159311753 + AT_rich Low_complexity Low_complexity 1 43 0 778 152 9 0 chrX 3288310 3288422 -159311508 - FLAM_C SINE Alu -19 124 12 189 0 0 0 chrX 3288978 3288999 -159310931 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 1647 175 3 27 chrX 3289125 3289422 -159310508 + AluJo SINE Alu 1 290 -22 1208 230 36 48 chrX 3289701 3290057 -159309873 - L1MD2 LINE L1 0 6359 6008 1930 163 3 0 chrX 3290259 3290554 -159309376 - AluJo SINE Alu -16 296 1 1711 191 75 9 chrX 3290810 3291129 -159308801 + MER2 DNA MER2_type 4 343 -1 5375 60 0 6 chrX 3291366 3292005 -159307925 - L1PA8 LINE L1 -12 6160 5526 237 143 42 34 chrX 3292698 3292817 -159307113 + C-rich Low_complexity Low_complexity 4 123 0 1501 171 66 21 chrX 3293259 3293546 -159306384 - AluJo SINE Alu -9 303 4 5715 132 17 7 chrX 3294168 3295123 -159304807 - L1PA16 LINE L1 0 6166 5203 23 0 0 0 chrX 3295394 3295417 -159304513 + AT_rich Low_complexity Low_complexity 1 23 0 3055 251 71 14 chrX 3295417 3296323 -159303607 - L1MC4a LINE L1 -2 7806 6850 230 213 0 0 chrX 3296401 3296448 -159303482 - L1MA4 LINE L1 -14 6286 6240 * 1173 124 1 0 chrX 3296422 3296604 -159303326 + L1PA13 LINE L1 5636 5819 -342 1502 137 22 0 chrX 3296605 3296832 -159303098 + L1PA13 LINE L1 5931 6162 -1 50 42 0 0 chrX 3297777 3297848 -159302082 + AT_rich Low_complexity Low_complexity 1 71 0 704 238 29 121 chrX 3298450 3298623 -159301307 + MLT1E1 LTR MaLR 2 189 -465 3004 110 2 5 chrX 3298623 3299040 -159300890 - L1PA13 LINE L1 -2 6161 5746 704 238 29 121 chrX 3299040 3299356 -159300574 + MLT1E1 LTR MaLR 189 424 -230 238 167 24 0 chrX 3299361 3299403 -159300527 - MLT1E LTR MaLR -272 321 279 1911 152 0 33 chrX 3299496 3299799 -159300131 + AluJb SINE Alu 1 293 -19 2880 103 15 2 chrX 3300355 3300763 -159299167 + L1PA13 LINE L1 5732 6144 -19 369 0 0 0 chrX 3301030 3301071 -159298859 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1788 164 0 4 chrX 3301072 3301353 -159298577 - AluJo SINE Alu -32 280 1 660 102 0 0 chrX 3301882 3301980 -159297950 + (CA)n Simple_repeat Simple_repeat 2 99 0 803 59 0 2 chrX 3302046 3302302 -159297628 + AluY SINE Alu 1 301 -10 309 316 28 12 chrX 3302314 3302457 -159297473 + MIR SINE MIR 12 103 -105 1626 161 14 27 chrX 3302461 3302753 -159297177 + AluJb SINE Alu 1 288 -24 1820 128 29 4 chrX 3303616 3303889 -159296041 - L1PA16 LINE L1 -5 6161 5882 807 296 117 49 chrX 3303889 3304860 -159295070 - L1M4 LINE L1 -2958 3188 2152 303 28 0 0 chrX 3304860 3304896 -159295034 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2292 106 3 0 chrX 3305081 3305383 -159294547 - AluSx SINE Alu -9 303 1 1512 145 9 112 chrX 3306049 3306380 -159293550 - AluJb SINE Alu -14 298 2 276 0 29 0 chrX 3306727 3306761 -159293169 + MADE1 DNA Mariner 46 80 0 1426 242 97 30 chrX 3307758 3308253 -159291677 + MLT1H LTR MaLR 1 528 -21 29 0 0 0 chrX 3308737 3308766 -159291164 + AT_rich Low_complexity Low_complexity 1 29 0 2081 138 0 0 chrX 3308808 3309104 -159290826 - AluSx SINE Alu -3 309 14 1888 155 0 29 chrX 3309854 3310164 -159289766 + AluJo SINE Alu 1 301 -11 2401 43 4 0 chrX 3310213 3310512 -159289418 - AluY SINE Alu 0 300 1 1643 162 49 0 chrX 3310891 3311010 -159288920 + AluJo SINE Alu 1 113 -199 321 26 0 0 chrX 3311010 3311048 -159288882 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1643 162 49 0 chrX 3311048 3311212 -159288718 + AluJo SINE Alu 113 298 -14 1708 162 7 34 chrX 3312116 3312413 -159287517 - AluJo SINE Alu -23 289 1 1781 182 0 10 chrX 3312803 3313116 -159286814 - AluJo SINE Alu 0 312 3 1952 143 10 0 chrX 3313736 3314043 -159285887 + AluSx SINE Alu 1 310 -2 1969 177 32 0 chrX 3314076 3314448 -159285482 + L1PB4 LINE L1 5766 6149 -7 734 279 85 33 chrX 3314547 3315121 -159284809 + L1ME3A LINE L1 5331 5957 -213 21 0 0 0 chrX 3315232 3315253 -159284677 + AT_rich Low_complexity Low_complexity 1 21 0 234 207 0 0 chrX 3315325 3315383 -159284547 + GA-rich Low_complexity Low_complexity 1 58 0 238 324 142 14 chrX 3315579 3315727 -159284203 + L2 LINE L2 3130 3296 -17 761 102 0 8 chrX 3317458 3317576 -159282354 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 1988 255 97 16 chrX 3317576 3317726 -159282204 + L1MB5 LINE L1 4169 4306 -1840 2318 74 0 3 chrX 3317726 3318025 -159281905 + AluY SINE Alu 1 298 -13 1988 255 97 16 chrX 3318025 3318732 -159281198 + L1MB5 LINE L1 4306 5095 -1051 1365 120 0 74 chrX 3318732 3318974 -159280956 + AluSx SINE Alu 1 224 -88 294 29 0 0 chrX 3318974 3319009 -159280921 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 578 251 101 45 chrX 3319014 3319593 -159280337 + L1MB5 LINE L1 5092 5720 -446 21 0 0 0 chrX 3319617 3319638 -159280292 + AT_rich Low_complexity Low_complexity 1 21 0 2143 103 6 0 chrX 3320161 3320472 -159279458 + AluSq SINE Alu 1 313 0 26 0 0 0 chrX 3320508 3320534 -159279396 + AT_rich Low_complexity Low_complexity 1 26 0 543 198 21 80 chrX 3320538 3320717 -159279213 + L1MB5 LINE L1 6014 6183 -1 268 326 6 22 chrX 3321378 3321559 -159278371 + (CA)n Simple_repeat Simple_repeat 1 178 0 378 301 3 34 chrX 3321577 3321913 -159278017 + (CA)n Simple_repeat Simple_repeat 1 325 0 426 302 0 12 chrX 3322043 3322212 -159277718 + (CA)n Simple_repeat Simple_repeat 1 167 0 1367 235 62 75 chrX 3322706 3323144 -159276786 - MER67D LTR ERV1 -8 506 75 1431 152 14 48 chrX 3323146 3323346 -159276584 + L1MA4 LINE L1 5847 6035 -265 1542 162 4 11 chrX 3323346 3323612 -159276318 - AluJo SINE Alu -1 311 48 1431 152 14 48 chrX 3323612 3323700 -159276230 + L1MA4 LINE L1 6035 6125 -175 1652 145 8 0 chrX 3323708 3323970 -159275960 - AluJb SINE Alu -1 311 48 4198 33 17 0 chrX 3323970 3324450 -159275480 - LTR2B LTR ERV1 -2 488 1 393 150 20 10 chrX 3324451 3324562 -159275368 - Alu SINE Alu -247 52 2 1923 118 13 54 chrX 3325257 3325572 -159274358 - AluSx SINE Alu -10 302 1 1924 141 3 3 chrX 3325806 3326110 -159273820 + AluSx SINE Alu 1 304 -8 560 101 60 18 chrX 3326426 3326594 -159273336 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 275 218 10 0 chrX 3326633 3326734 -159273196 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 194 274 27 27 chrX 3326948 3327021 -159272909 + L3 LINE CR1 1504 1576 -1 3294 170 43 19 chrX 3327701 3328347 -159271583 + L1PB4 LINE L1 5482 6143 -13 1544 167 11 28 chrX 3328893 3329180 -159270750 + AluJo SINE Alu 7 288 -24 242 114 0 23 chrX 3329183 3329227 -159270703 + (GGA)n Simple_repeat Simple_repeat 1 43 0 1234 253 63 38 chrX 3329500 3329927 -159270003 - MLT1C LTR MaLR -9 458 21 1721 161 0 40 chrX 3330024 3330348 -159269582 + AluJo SINE Alu 1 311 -1 289 240 82 96 chrX 3331136 3331194 -159268736 - MLT1J2 LTR MaLR -2 448 391 2542 55 0 3 chrX 3331194 3331506 -159268424 - AluY SINE Alu 0 311 1 289 240 82 96 chrX 3331506 3331655 -159268275 - MLT1J2 LTR MaLR -59 391 244 1441 140 18 0 chrX 3331705 3331926 -159268004 - MLT1B LTR MaLR -8 382 158 489 176 0 22 chrX 3331926 3332017 -159267913 - MLT1A2 LTR MaLR 0 374 286 562 133 67 14 chrX 3332037 3332322 -159267608 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 4028 176 21 4 chrX 3332323 3333044 -159266886 - L1MB3 LINE L1 -8 6175 5443 1854 140 33 7 chrX 3333258 3333558 -159266372 - AluSx SINE Alu -4 308 1 1326 81 0 51 chrX 3333567 3333711 -159266219 + L1MA1 LINE L1 6116 6249 -53 1871 161 0 0 chrX 3333711 3334010 -159265920 + AluSx SINE Alu 1 299 -13 1326 81 0 51 chrX 3334010 3334062 -159265868 + L1MA1 LINE L1 6249 6302 0 24 0 0 0 chrX 3334062 3334086 -159265844 + AT_rich Low_complexity Low_complexity 1 24 0 430 268 14 49 chrX 3334782 3334924 -159265006 - MLT1C LTR MaLR -1 466 330 1438 137 0 0 chrX 3334924 3335175 -159264755 + AluSg/x SINE Alu 86 336 0 494 198 95 0 chrX 3335356 3335472 -159264458 + MER53 DNA DNA 2 128 -61 1811 144 10 3 chrX 3335481 3335780 -159264150 + AluJb SINE Alu 1 301 -11 31 82 0 0 chrX 3335784 3335857 -159264073 + AT_rich Low_complexity Low_complexity 1 73 0 198 339 51 0 chrX 3336286 3336345 -159263585 + L3 LINE CR1 132 193 -1384 245 270 10 0 chrX 3336447 3336547 -159263383 - HAL1 LINE L1 -124 2383 2283 402 230 17 126 chrX 3336567 3336609 -159263321 + MER87 LTR ERV1 1 46 -495 2055 117 10 7 chrX 3336609 3336917 -159263013 + AluSq SINE Alu 1 309 -4 402 230 17 126 chrX 3336917 3337048 -159262882 + MER87 LTR ERV1 46 149 -392 1630 146 0 8 chrX 3337064 3337354 -159262576 + AluJb SINE Alu 30 317 0 183 42 0 0 chrX 3337380 3337404 -159262526 + (GA)n Simple_repeat Simple_repeat 2 25 0 939 245 89 65 chrX 3337528 3338017 -159261913 + LTR8A LTR ERV1 116 727 0 566 276 100 69 chrX 3338029 3338219 -159261711 - HAL1 LINE L1 -273 2234 2051 896 149 37 50 chrX 3338219 3338380 -159261550 - FRAM SINE Alu -7 159 1 566 276 100 69 chrX 3338380 3338728 -159261202 - HAL1 LINE L1 -456 2051 1679 2628 102 9 80 chrX 3338728 3339178 -159260752 - MER4E LTR ERV1 0 766 349 21 0 0 0 chrX 3339531 3339552 -159260378 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 3339671 3339692 -159260238 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 3339841 3339863 -159260067 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 3340053 3340074 -159259856 + GC_rich Low_complexity Low_complexity 1 21 0 303 122 0 0 chrX 3341142 3341191 -159258739 + (TC)n Simple_repeat Simple_repeat 2 50 0 2471 91 8 36 chrX 3341212 3341277 -159258653 - THE1A LTR MaLR 0 355 290 2120 104 0 3 chrX 3341277 3341574 -159258356 - AluSx SINE Alu -16 296 1 2471 91 8 36 chrX 3341574 3341871 -159258059 - THE1A LTR MaLR -65 290 3 10845 101 43 2 chrX 3341873 3343391 -159256539 - THE1A-int LTR MaLR 0 1580 1 2392 120 11 0 chrX 3343391 3343742 -159256188 - THE1A LTR MaLR 0 355 1 245 186 0 0 chrX 3343930 3343973 -159255957 - Alu SINE Alu -259 44 2 405 151 0 0 chrX 3344497 3344570 -159255360 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 527 107 0 0 chrX 3344911 3344986 -159254944 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 219 300 80 10 chrX 3345427 3345527 -159254403 - L2 LINE L2 -4 3309 3203 1773 143 0 53 chrX 3346294 3346615 -159253315 + AluJb SINE Alu 1 304 -8 183 194 0 0 chrX 3346861 3346892 -159253038 + L2 LINE L2 3231 3261 -11 282 283 43 58 chrX 3347280 3347418 -159252512 + MER5A DNA MER1_type 49 184 -5 243 146 21 0 chrX 3347510 3347558 -159252372 - L2 LINE L2 -205 3067 3019 207 167 0 0 chrX 3348548 3348584 -159251346 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 202 155 87 41 chrX 3348898 3348947 -159250983 + MIR SINE MIR 68 119 -89 191 288 0 15 chrX 3348986 3349052 -159250878 - L2 LINE L2 -13 3259 3195 242 339 37 18 chrX 3349506 3349615 -159250315 - L2 LINE L2 -208 3064 2954 182 299 93 10 chrX 3349979 3350076 -159249854 - MER5A DNA MER1_type -11 178 74 1050 173 31 126 chrX 3350323 3350501 -159249429 - AluJo SINE Alu -8 304 168 1687 146 7 0 chrX 3350501 3350775 -159249155 + AluSx SINE Alu 1 276 -36 1050 173 31 126 chrX 3350775 3350914 -159249016 - AluJo SINE Alu -144 168 17 616 196 227 6 chrX 3351246 3351409 -159248521 + MER20 DNA MER1_type 2 200 -19 283 211 0 211 chrX 3351474 3351607 -159248323 + L2 LINE L2 3202 3306 -7 345 266 49 28 chrX 3351636 3351779 -159248151 - L1MC/D LINE L1 -2080 5728 5583 2156 124 0 0 chrX 3351811 3352117 -159247813 + AluSx SINE Alu 1 306 -6 229 264 144 16 chrX 3352128 3352253 -159247677 + L1ME3A LINE L1 5632 5772 -390 313 265 42 78 chrX 3352260 3352426 -159247504 + L1ME3A LINE L1 5809 5968 -202 378 211 12 170 chrX 3352698 3352761 -159247169 - MER112 DNA MER1_type -45 215 144 2108 105 7 0 chrX 3352761 3353057 -159246873 + AluSx SINE Alu 7 304 -8 378 211 12 170 chrX 3353057 3353201 -159246729 - MER112 DNA MER1_type -116 144 -21 2007 104 30 7 chrX 3353201 3353498 -159246432 - AluSx SINE Alu -8 304 1 2198 94 0 0 chrX 3353499 3353796 -159246134 - AluSx SINE Alu -15 297 1 378 211 12 170 chrX 3353796 3353832 -159246098 - MER112 DNA MER1_type -212 48 8 1606 145 100 35 chrX 3354883 3355111 -159244819 - MSTA LTR MaLR -1 427 172 2395 62 3 0 chrX 3355111 3355415 -159244515 - AluY SINE Alu -5 306 2 1606 145 100 35 chrX 3355415 3355496 -159244434 - MSTA LTR MaLR -256 172 98 2698 161 30 79 chrX 3355942 3356550 -159243380 - L1MB3 LINE L1 -4 6179 5602 1839 174 28 75 chrX 3356527 3356620 -159243310 - L1MB3 LINE L1 -1755 4391 4295 * 1849 125 49 7 chrX 3356620 3356907 -159243023 - AluSx SINE Alu -13 299 1 1839 174 28 75 chrX 3356907 3356955 -159242975 - L1MB3 LINE L1 -1851 4295 4246 1745 113 0 96 chrX 3356955 3357290 -159242640 - AluSx SINE Alu -9 303 1 1839 174 28 75 chrX 3357290 3357682 -159242248 - L1MB3 LINE L1 -1900 4246 3882 1676 155 50 4 chrX 3358337 3358615 -159241315 + AluSx SINE Alu 1 291 -21 2114 90 0 20 chrX 3358721 3359021 -159240909 + AluY SINE Alu 1 294 -17 806 261 0 0 chrX 3359139 3359304 -159240626 - AluJb SINE Alu -11 301 137 2046 104 3 14 chrX 3359437 3359734 -159240196 - AluSx SINE Alu -18 294 1 358 317 6 19 chrX 3359902 3360227 -159239703 + (CA)n Simple_repeat Simple_repeat 1 320 0 367 296 0 28 chrX 3360479 3360655 -159239275 + (CA)n Simple_repeat Simple_repeat 1 171 0 1559 219 58 96 chrX 3361128 3361577 -159238353 - MER67D LTR ERV1 0 514 87 2094 178 13 31 chrX 3361577 3361777 -159238153 + L1MA4 LINE L1 5847 6049 -251 1665 144 4 0 chrX 3361777 3362040 -159237890 - AluJo SINE Alu -1 311 48 2094 178 13 31 chrX 3362040 3362294 -159237636 + L1MA4 LINE L1 6049 6293 -7 1559 219 58 96 chrX 3362294 3362378 -159237552 - MER67D LTR ERV1 -427 87 1 2372 109 34 14 chrX 3362418 3362775 -159237155 + THE1B LTR MaLR 1 364 0 462 137 0 0 chrX 3362826 3362899 -159237031 - AluJo SINE Alu -6 306 234 1094 160 48 0 chrX 3363282 3363469 -159236461 - AluJo SINE Alu -69 243 48 2029 117 7 23 chrX 3363696 3364005 -159235925 - AluSx SINE Alu -8 304 1 1743 127 67 11 chrX 3364230 3364514 -159235416 + AluSx SINE Alu 3 302 -10 315 128 51 26 chrX 3364761 3364878 -159235052 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 3158 169 50 13 chrX 3364909 3365531 -159234399 + L1PB4 LINE L1 5499 6143 -13 1323 201 18 25 chrX 3366073 3366357 -159233573 + AluJo SINE Alu 7 288 -24 273 235 25 12 chrX 3366648 3366729 -159233201 - MLT1C LTR MaLR -4 463 382 2390 57 0 0 chrX 3367566 3367864 -159232066 - AluY SINE Alu -13 298 1 692 92 20 0 chrX 3368698 3368796 -159231134 + FLAM_C SINE Alu 23 122 -21 2298 81 3 0 chrX 3368804 3369111 -159230819 - AluSx SINE Alu -4 308 1 1478 194 7 0 chrX 3369131 3369415 -159230515 + AluJo SINE Alu 3 288 -24 757 71 50 0 chrX 3370019 3370118 -159229812 - AluSq/x SINE Alu -204 108 5 1339 158 41 15 chrX 3370134 3370400 -159229530 + L1MA8 LINE L1 6017 6289 -2 2207 109 0 0 chrX 3370410 3370712 -159229218 + AluSx SINE Alu 1 302 -10 1582 138 30 0 chrX 3370742 3371011 -159228919 - L1MA5A LINE L1 0 6297 6021 1717 147 97 27 chrX 3371349 3371632 -159228298 + MLT1A1 LTR MaLR 1 314 -51 1576 83 12 51 chrX 3371632 3371885 -159228045 + MER75B DNA T2_type 1 243 0 1717 147 97 27 chrX 3371885 3371941 -159227989 + MLT1A1 LTR MaLR 314 365 0 1072 151 0 0 chrX 3372062 3372234 -159227696 - AluSq SINE Alu 0 313 142 1051 184 71 21 chrX 3372393 3372632 -159227298 - AluJb SINE Alu -59 253 3 1321 172 78 54 chrX 3372806 3373102 -159226828 - AluJo SINE Alu -9 303 1 1215 176 9 0 chrX 3373197 3373407 -159226523 - L1PA16 LINE L1 -9 6157 5946 204 209 0 47 chrX 3374178 3374264 -159225666 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 * 221 134 60 45 chrX 3374204 3374271 -159225659 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 3685 131 23 29 chrX 3374440 3374517 -159225413 - L1PA16 LINE L1 -24 6142 6066 2001 186 41 117 chrX 3374517 3375177 -159224753 - LTR9 LTR ERV1 0 612 3 3685 131 23 29 chrX 3375177 3375417 -159224513 - L1PA16 LINE L1 -100 6066 5166 609 279 59 50 chrX 3375417 3375692 -159224238 - L1MD3 LINE L1 -2169 5826 5546 2625 74 148 3 chrX 3375692 3376083 -159223847 + LTR7 LTR ERV1 1 448 -2 609 279 59 50 chrX 3376083 3376165 -159223765 - L1MD3 LINE L1 -2449 5546 5466 549 61 0 49 chrX 3376471 3376522 -159223408 - MADE1 DNA Mariner -1 79 27 1799 153 0 0 chrX 3376522 3376803 -159223127 + AluSx SINE Alu 1 281 -31 243 0 0 0 chrX 3376804 3376831 -159223099 + (CA)n Simple_repeat Simple_repeat 2 28 0 549 61 0 49 chrX 3376831 3376859 -159223071 - MADE1 DNA Mariner -52 28 2 374 120 0 0 chrX 3377836 3377886 -159222044 + Alu SINE Alu 1 50 -249 352 120 0 0 chrX 3377921 3377971 -159221959 + Alu SINE Alu 1 50 -250 1617 99 0 5 chrX 3378006 3378229 -159221701 + AluSq SINE Alu 1 222 -91 218 146 42 0 chrX 3378243 3378291 -159221639 + G-rich Low_complexity Low_complexity 2 51 0 600 159 28 9 chrX 3378500 3378607 -159221323 + L1MB3 LINE L1 6065 6173 -10 697 136 36 0 chrX 3378610 3378720 -159221210 - FLAM_C SINE Alu -18 125 12 1337 163 96 4 chrX 3379777 3380028 -159219902 - AluJo SINE Alu -30 282 9 237 214 0 18 chrX 3380031 3380087 -159219843 - AluJb SINE Alu -162 140 86 1285 178 5 0 chrX 3380087 3380306 -159219624 - AluJo SINE Alu -92 220 1 2071 112 20 0 chrX 3380414 3380719 -159219211 - AluSx SINE Alu -1 311 1 2117 109 0 22 chrX 3380727 3381040 -159218890 - AluSx SINE Alu -6 306 1 969 129 0 0 chrX 3381040 3381180 -159218750 - AluJo SINE Alu -171 141 2 675 200 21 28 chrX 3381223 3381368 -159218562 - MLT1C LTR MaLR -8 459 316 741 203 98 87 chrX 3381626 3381912 -159218018 - MLT1C LTR MaLR -134 333 45 653 182 108 140 chrX 3381921 3382256 -159217674 - MLT1C LTR MaLR -143 324 1 342 309 63 37 chrX 3382354 3382545 -159217385 - MIR SINE MIR 0 262 67 2193 229 7 37 chrX 3382547 3382984 -159216946 + L1MB7 LINE L1 5630 6048 -136 2113 105 10 0 chrX 3382984 3383290 -159216640 + AluSx SINE Alu 1 309 -3 2193 229 7 37 chrX 3383290 3383415 -159216515 + L1MB7 LINE L1 6048 6175 -9 3225 135 4 4 chrX 3383428 3383947 -159215983 + L1PA16 LINE L1 5647 6165 -1 24 32 0 0 chrX 3383947 3383978 -159215952 + AT_rich Low_complexity Low_complexity 1 31 0 1934 160 0 0 chrX 3383985 3384292 -159215638 + AluSx SINE Alu 1 307 -5 270 204 0 56 chrX 3384292 3384338 -159215592 + AluSg/x SINE Alu 135 179 -123 * 330 54 0 0 chrX 3384336 3384438 -159215492 + Alu SINE Alu 234 325 0 1801 216 49 28 chrX 3384924 3385318 -159214612 + L1MB5 LINE L1 5728 6133 -41 2143 125 0 0 chrX 3385318 3385629 -159214301 + AluSx SINE Alu 2 312 0 1801 216 49 28 chrX 3385629 3385664 -159214266 + L1MB5 LINE L1 6133 6166 -8 1366 212 7 0 chrX 3385743 3386031 -159213899 + AluJo SINE Alu 1 290 -22 1230 109 6 0 chrX 3386133 3386307 -159213623 - AluSg/x SINE Alu -16 296 122 1455 186 4 8 chrX 3386413 3386677 -159213253 - AluJo SINE Alu -45 267 5 736 217 63 10 chrX 3386831 3387026 -159212904 + MLT1B LTR MaLR 1 197 -177 902 186 50 25 chrX 3387026 3387225 -159212705 - L1MB1 LINE L1 -12 6156 5953 767 214 0 0 chrX 3387263 3387403 -159212527 + MLT1B LTR MaLR 193 332 -58 1981 121 175 22 chrX 3387491 3387862 -159212068 - MSTA LTR MaLR 0 428 1 2681 184 29 6 chrX 3388184 3388700 -159211230 + L1MB1 LINE L1 5586 6113 -76 2480 94 9 0 chrX 3388700 3389038 -159210892 + L1PB1 LINE L1 5800 6144 -7 377 174 43 0 chrX 3389059 3389128 -159210802 + L1MB1 LINE L1 6092 6163 -5 22 0 0 0 chrX 3389450 3389472 -159210458 + AT_rich Low_complexity Low_complexity 1 22 0 213 132 0 0 chrX 3389954 3389992 -159209938 + (TCC)n Simple_repeat Simple_repeat 3 40 0 255 86 17 35 chrX 3390199 3390257 -159209673 + (TCC)n Simple_repeat Simple_repeat 1 57 0 615 206 12 8 chrX 3390278 3390515 -159209415 + CT-rich Low_complexity Low_complexity 1 237 0 1230 203 31 157 chrX 3390739 3390789 -159209141 + L1MB5 LINE L1 5613 5668 -506 1783 114 96 7 chrX 3390789 3391069 -159208861 + AluSx SINE Alu 1 305 -7 708 170 0 30 chrX 3391079 3391214 -159208716 + FLAM_C SINE Alu 1 131 -2 1230 203 31 157 chrX 3391214 3391274 -159208656 + L1MB5 LINE L1 5678 5744 -430 1784 158 10 0 chrX 3391274 3391577 -159208353 + AluJb SINE Alu 1 306 -6 1230 203 31 157 chrX 3391577 3391942 -159207988 + L1MB5 LINE L1 5744 6004 -170 2284 94 0 0 chrX 3391942 3392241 -159207689 + AluSx SINE Alu 6 304 -8 1230 203 31 157 chrX 3392241 3392391 -159207539 + L1MB5 LINE L1 6004 6171 -3 4414 135 12 25 chrX 3392860 3393580 -159206350 - MER50 LTR ERV1 -23 711 1 2496 73 0 0 chrX 3393584 3393898 -159206032 + MER41A LTR ERV1 1 314 -240 282 116 0 0 chrX 3394343 3394386 -159205544 + (T)n Simple_repeat Simple_repeat 1 43 0 712 216 9 0 chrX 3395026 3395174 -159204756 + L1MB2 LINE L1 5772 5930 -232 2284 122 20 58 chrX 3395176 3395328 -159204602 - LTR56 LTR ERV1 0 445 289 966 154 0 0 chrX 3395328 3395477 -159204453 - FRAM SINE Alu -17 149 1 2284 122 20 58 chrX 3395477 3395796 -159204134 - LTR56 LTR ERV1 -156 289 9 285 247 27 0 chrX 3395802 3395885 -159204045 + L1MB2 LINE L1 5928 6012 -167 1655 168 7 3 chrX 3395964 3396255 -159203675 + AluJb SINE Alu 21 312 0 1337 140 5 10 chrX 3396288 3396495 -159203435 + THE1B LTR MaLR 159 364 0 4130 134 11 11 chrX 3396590 3397031 -159202899 + MER41B LTR ERV1 1 444 -191 1963 173 16 16 chrX 3397031 3397406 -159202524 - THE1C LTR MaLR 0 375 1 4130 134 11 11 chrX 3397406 3397599 -159202331 + MER41B LTR ERV1 443 635 0 469 160 21 0 chrX 3398112 3398206 -159201724 + LTR26 LTR ERV1 1 96 -507 799 282 7 22 chrX 3398466 3398583 -159201347 + L1MD2 LINE L1 6077 6194 -165 1997 134 44 49 chrX 3398583 3398949 -159200981 + THE1B LTR MaLR 1 364 0 799 282 7 22 chrX 3398949 3399108 -159200822 + L1MD2 LINE L1 6194 6349 -10 3008 201 36 30 chrX 3399374 3400016 -159199914 + MER82 DNA MER2_type 7 652 -1 290 317 99 32 chrX 3400023 3400431 -159199499 + MLT1E LTR MaLR 20 499 -96 640 191 95 0 chrX 3401856 3401982 -159197948 - MLT1E1 LTR MaLR -110 544 407 1927 178 31 3 chrX 3402345 3402700 -159197230 - MLT1A1 LTR MaLR 0 365 1 2185 231 77 58 chrX 3403007 3403471 -159196459 - MLT1E1 LTR MaLR 0 654 173 1979 87 53 20 chrX 3403471 3403771 -159196159 - AluSq SINE Alu -1 312 3 2185 231 77 58 chrX 3403771 3403942 -159195988 - MLT1E1 LTR MaLR -481 173 7 3580 156 114 36 chrX 3403942 3404690 -159195240 - L1PA16 LINE L1 -18 6148 5343 2064 98 11 0 chrX 3404696 3405007 -159194923 + AluSx SINE Alu 1 314 0 958 144 0 54 chrX 3405007 3405221 -159194709 + AluSg/x SINE Alu 122 326 0 2347 74 3 3 chrX 3406133 3406442 -159193488 - AluSx SINE Alu -3 309 1 3437 92 54 75 chrX 3406500 3406718 -159193212 + L1PA16 LINE L1 5569 5790 -376 2271 89 20 3 chrX 3406718 3407022 -159192908 + AluSg SINE Alu 1 309 -1 3437 92 54 75 chrX 3407022 3407412 -159192518 + L1PA16 LINE L1 5790 6164 -2 2661 55 0 0 chrX 3407427 3407738 -159192192 + AluY SINE Alu 1 311 0 504 295 77 30 chrX 3407784 3408018 -159191912 + MLT1J LTR MaLR 266 510 -1 2367 178 17 5 chrX 3408669 3409091 -159190839 + MSTB1 LTR MaLR 6 432 0 1684 113 20 24 chrX 3409314 3409561 -159190369 + AluJo SINE Alu 50 295 -17 2485 81 0 0 chrX 3410005 3410300 -159189630 + AluSq SINE Alu 3 297 -16 1040 190 44 0 chrX 3410576 3410802 -159189128 + L1MB5 LINE L1 5939 6174 0 4013 110 2 2 chrX 3411094 3411648 -159188282 + MER41A LTR ERV1 1 554 0 1787 205 9 36 chrX 3411813 3412223 -159187707 + L1MC2 LINE L1 5937 6337 -7 1955 117 11 65 chrX 3412223 3412574 -159187356 + L1PB2 LINE L1 5817 6148 -3 2098 104 0 24 chrX 3412731 3413018 -159186912 + AluSx SINE Alu 1 280 -32 258 32 0 0 chrX 3413020 3413051 -159186879 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 225 94 0 0 chrX 3413086 3413118 -159186812 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1438 126 44 139 chrX 3413119 3413254 -159186676 + AluJo SINE Alu 1 90 -222 2256 112 3 3 chrX 3413254 3413558 -159186372 + AluSg SINE Alu 1 304 -6 1438 126 44 139 chrX 3413558 3413739 -159186191 + AluJo SINE Alu 90 287 -25 2300 112 0 0 chrX 3414236 3414532 -159185398 - AluSx SINE Alu -16 296 1 906 125 0 8 chrX 3414558 3414686 -159185244 + FLAM_C SINE Alu 1 127 -16 899 239 126 60 chrX 3415386 3415570 -159184360 + L1ME3A LINE L1 5145 5315 -855 2266 117 0 0 chrX 3415570 3415870 -159184060 + AluSx SINE Alu 1 300 -12 899 239 126 60 chrX 3415870 3415881 -159184049 + L1ME3A LINE L1 5315 5324 -846 2080 142 7 3 chrX 3415881 3416190 -159183740 + AluSx SINE Alu 1 310 -2 899 239 126 60 chrX 3416190 3416647 -159183283 + L1ME3A LINE L1 5324 5858 -312 * 1990 217 41 29 chrX 3416260 3416748 -159183182 + L1MA3 LINE L1 5477 5970 -335 * 3970 126 35 0 chrX 3416315 3416919 -159183011 + L1PA16 LINE L1 5522 6146 -20 849 192 18 0 chrX 3416928 3417095 -159182835 + L1MB3 LINE L1 5428 5597 -577 406 143 16 0 chrX 3417095 3417158 -159182772 + Charlie1 DNA MER1_type 2697 2760 -1 856 222 6 6 chrX 3417539 3417719 -159182211 + MER58A DNA MER1_type 45 224 0 2201 193 30 17 chrX 3417926 3418388 -159181542 + MER89 LTR ERV1 1 468 -91 519 186 28 11 chrX 3418452 3418629 -159181301 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 682 166 29 0 chrX 3418689 3418864 -159181066 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 307 208 42 0 chrX 3418878 3418998 -159180932 + (TGGA)n Simple_repeat Simple_repeat 3 127 0 615 153 5 53 chrX 3419017 3419206 -159180724 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 397 218 11 0 chrX 3419218 3419305 -159180625 + MER89 LTR ERV1 472 559 0 23 54 0 0 chrX 3420158 3420195 -159179735 + AT_rich Low_complexity Low_complexity 1 37 0 1660 196 3 20 chrX 3420431 3420732 -159179198 - AluJo SINE Alu -16 296 1 581 174 22 28 chrX 3421525 3421852 -159178078 + (TCCA)n Simple_repeat Simple_repeat 1 325 0 2837 202 50 5 chrX 3422046 3422631 -159177299 + L1MB3 LINE L1 5566 6176 -7 491 225 0 5 chrX 3423086 3423308 -159176622 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 253 215 25 33 chrX 3423282 3423403 -159176527 + (TGAA)n Simple_repeat Simple_repeat 4 123 0 * 478 242 6 6 chrX 3423437 3423615 -159176315 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 625 217 7 0 chrX 3423630 3423908 -159176022 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 801 170 0 11 chrX 3423933 3424305 -159175625 + (TGGA)n Simple_repeat Simple_repeat 1 367 0 312 352 0 0 chrX 3424306 3424397 -159175533 + (TGGG)n Simple_repeat Simple_repeat 1 91 0 705 208 0 0 chrX 3424398 3424566 -159175364 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 471 202 0 0 chrX 3424578 3424692 -159175238 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 192 77 0 0 chrX 3424702 3424728 -159175202 + (TG)n Simple_repeat Simple_repeat 1 26 0 2719 45 0 0 chrX 3425443 3425754 -159174176 - AluY SINE Alu 0 311 1 685 58 8 91 chrX 3425756 3425877 -159174053 + LTR36 LTR ERV1 11 121 -490 2279 79 3 0 chrX 3425878 3426169 -159173761 + AluY SINE Alu 1 292 -19 1169 127 12 0 chrX 3426169 3426335 -159173595 + LTR36 LTR ERV1 444 611 0 2242 116 0 3 chrX 3426567 3426868 -159173062 + AluSx SINE Alu 1 300 -12 2154 119 16 0 chrX 3426894 3427197 -159172733 + AluSx SINE Alu 1 308 -4 1834 198 98 30 chrX 3427671 3427796 -159172134 - MLT1D LTR MaLR -2 503 388 1730 170 3 7 chrX 3427796 3428079 -159171851 + AluJo SINE Alu 1 282 -30 1834 198 98 30 chrX 3428079 3428424 -159171506 - MLT1D LTR MaLR -117 388 1 484 168 11 0 chrX 3428572 3428667 -159171263 - L1PA11 LINE L1 0 6174 6079 444 164 0 0 chrX 3428667 3428740 -159171190 - L1P4 LINE L1 -680 5488 5416 * 4556 127 13 1 chrX 3428716 3429392 -159170538 - L1PA11 LINE L1 -81 6093 5410 1157 171 9 28 chrX 3429680 3429891 -159170039 + AluJo SINE Alu 87 293 -19 1116 124 74 109 chrX 3429904 3430187 -159169743 + L1MA8 LINE L1 6019 6291 0 207 281 0 0 chrX 3430209 3430273 -159169657 + A-rich Low_complexity Low_complexity 1 64 0 2314 102 0 0 chrX 3430273 3430566 -159169364 + AluSx SINE Alu 1 293 -19 674 186 0 0 chrX 3430652 3430765 -159169165 + FLAM_A SINE Alu 25 137 -5 2172 133 0 0 chrX 3430789 3431090 -159168840 - AluSx SINE Alu -11 301 1 605 173 27 0 chrX 3431219 3431328 -159168602 - MLT1D LTR MaLR -6 499 388 2085 145 117 25 chrX 3431328 3431691 -159168239 - MSTA LTR MaLR 0 428 25 2746 89 14 3 chrX 3431691 3432060 -159167870 + THE1C LTR MaLR 3 375 0 2085 145 117 25 chrX 3432060 3432088 -159167842 - MSTA LTR MaLR -403 25 1 1831 220 32 3 chrX 3432088 3432465 -159167465 - MLT1D LTR MaLR -113 392 5 964 162 52 0 chrX 3432797 3432951 -159166979 - AluJo SINE Alu -30 282 121 52 0 0 0 chrX 3432983 3433035 -159166895 + AT_rich Low_complexity Low_complexity 1 52 0 4479 148 3 1 chrX 3433047 3433744 -159166186 + L1PA15 LINE L1 5467 6164 -1 2123 86 61 0 chrX 3433749 3434028 -159165902 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 3434048 3434071 -159165859 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1413 206 11 11 chrX 3434073 3434355 -159165575 - AluJo SINE Alu -30 282 1 401 322 117 23 chrX 3434473 3434623 -159165307 - HAL1 LINE L1 -145 2362 2227 321 26 0 0 chrX 3434623 3434661 -159165269 + (CA)n Simple_repeat Simple_repeat 1 38 0 401 322 117 23 chrX 3434661 3435025 -159164905 - HAL1 LINE L1 -280 2227 1800 192 279 0 51 chrX 3435046 3435125 -159164805 + MIR SINE MIR 82 156 -106 376 236 115 115 chrX 3435206 3435545 -159164385 - HAL1 LINE L1 -698 1809 1471 2384 96 0 0 chrX 3435559 3435860 -159164070 - AluSx SINE Alu -11 301 1 433 208 3 44 chrX 3435868 3436172 -159163758 + CT-rich Low_complexity Low_complexity 1 291 0 1794 159 7 17 chrX 3436323 3436625 -159163305 + AluJb SINE Alu 1 299 -13 273 29 0 0 chrX 3436989 3437023 -159162907 + (TG)n Simple_repeat Simple_repeat 1 34 0 1935 140 25 3 chrX 3437110 3437431 -159162499 + MLT1A1 LTR MaLR 1 328 -37 257 221 13 39 chrX 3437815 3437892 -159162038 + L1M3 LINE L1 5633 5707 -473 1791 185 7 7 chrX 3437952 3438249 -159161681 - AluJb SINE Alu -15 297 1 2124 117 0 0 chrX 3438261 3438566 -159161364 - AluSx SINE Alu 0 305 1 1610 96 9 0 chrX 3438572 3438802 -159161128 - L1PA14 LINE L1 -2 6159 5928 303 49 0 0 chrX 3439155 3439196 -159160734 + (TA)n Simple_repeat Simple_repeat 1 41 0 258 111 0 0 chrX 3439196 3439236 -159160694 + (GA)n Simple_repeat Simple_repeat 1 40 0 1674 96 23 0 chrX 3439425 3439645 -159160285 - AluSg/x SINE Alu -4 308 84 1719 185 3 3 chrX 3439655 3439958 -159159972 - AluJo SINE Alu -9 303 1 1810 166 13 17 chrX 3440060 3440361 -159159569 + AluJo SINE Alu 1 300 -12 189 0 0 0 chrX 3440530 3440551 -159159379 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 979 192 6 0 chrX 3440979 3441161 -159158769 - AluJo SINE Alu -7 305 123 249 177 32 32 chrX 3441198 3441242 -159158688 - L1M LINE L1 -2398 5410 5364 1948 115 21 10 chrX 3441242 3441530 -159158400 - AluSx SINE Alu -21 291 1 249 177 32 32 chrX 3441530 3441547 -159158383 - L1M LINE L1 -2443 5365 5349 554 67 0 0 chrX 3441590 3441665 -159158265 - L1PA5 LINE L1 0 6154 6080 4389 141 53 87 chrX 3441665 3442140 -159157790 - L1MC1 LINE L1 -2 6331 5841 1948 153 40 0 chrX 3442140 3442440 -159157490 - AluJo SINE Alu 0 312 1 4389 141 53 87 chrX 3442440 3442501 -159157429 - L1MC1 LINE L1 -492 5841 5779 2437 93 0 0 chrX 3442501 3442803 -159157127 - AluSg SINE Alu -8 302 1 2319 100 3 3 chrX 3442805 3443116 -159156814 - AluSx SINE Alu -1 311 1 4389 141 53 87 chrX 3443116 3443526 -159156404 - L1MC1 LINE L1 -555 5778 5414 523 277 128 36 chrX 3443529 3443727 -159156203 - L1ME3A LINE L1 -224 5946 5768 2227 141 30 22 chrX 3443727 3444088 -159155842 + THE1B LTR MaLR 1 364 0 523 277 128 36 chrX 3444088 3444438 -159155492 - L1ME3A LINE L1 -402 5768 5337 2093 139 3 0 chrX 3444454 3444748 -159155182 - AluJo SINE Alu -13 299 5 336 304 172 25 chrX 3444750 3445465 -159154465 - L1ME3A LINE L1 -2064 4082 3247 1471 116 9 9 chrX 3445465 3445681 -159154249 - AluSq SINE Alu -16 297 82 336 304 172 25 chrX 3445681 3445726 -159154204 - L1ME3A LINE L1 -2899 3247 3210 43 108 0 0 chrX 3445732 3445908 -159154022 + AT_rich Low_complexity Low_complexity 1 176 0 919 231 30 0 chrX 3446961 3447160 -159152770 + MER2 DNA MER2_type 1 205 -140 1139 161 9 28 chrX 3447162 3447373 -159152557 - AluJo SINE Alu -10 302 96 * 1299 131 0 53 chrX 3447371 3447577 -159152353 - AluSx SINE Alu -117 195 1 1057 128 0 0 chrX 3447876 3448024 -159151906 + FRAM SINE Alu 11 158 -18 672 194 7 28 chrX 3448276 3448420 -159151510 - MLT1C LTR MaLR 0 467 327 4363 153 33 30 chrX 3448420 3448540 -159151390 - LTR39 LTR ERV1 -28 755 637 1942 169 0 0 chrX 3448540 3448848 -159151082 + AluJb SINE Alu 1 308 -4 2307 62 0 36 chrX 3448848 3449152 -159150778 + AluY SINE Alu 1 293 -18 4363 153 33 30 chrX 3449152 3449783 -159150147 - LTR39 LTR ERV1 -145 638 1 3133 100 27 11 chrX 3449784 3450098 -159149832 + MER41B LTR ERV1 1 326 -309 1710 168 58 9 chrX 3450098 3450425 -159149505 + MER61A LTR ERV1 1 343 0 3133 100 27 11 chrX 3450425 3450559 -159149371 + MER41B LTR ERV1 326 456 -179 868 139 0 29 chrX 3450562 3450699 -159149231 + AluSg/x SINE Alu 163 295 -15 2298 103 0 0 chrX 3450721 3451013 -159148917 + AluSx SINE Alu 2 293 -19 729 219 2 26 chrX 3451160 3451288 -159148642 - L1MB2 LINE L1 -212 5956 5835 2243 98 10 7 chrX 3451288 3451593 -159148337 - AluSq SINE Alu -7 306 1 729 219 2 26 chrX 3451593 3451674 -159148256 - L1MB2 LINE L1 -333 5835 5754 612 220 22 78 chrX 3451733 3451965 -159147965 + MER20 DNA MER1_type 1 219 0 1985 125 14 3 chrX 3452172 3452461 -159147469 - AluSx SINE Alu -20 292 1 231 170 0 0 chrX 3452569 3452616 -159147314 + L1MC4 LINE L1 6659 6705 -1337 2400 86 3 3 chrX 3452791 3453095 -159146835 + AluSx SINE Alu 1 304 -8 2266 107 0 0 chrX 3453214 3453505 -159146425 - AluSx SINE Alu -21 291 1 1311 223 64 21 chrX 3453599 3453733 -159146197 + AluJo SINE Alu 1 128 -184 185 0 40 0 chrX 3453733 3453758 -159146172 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1311 223 64 21 chrX 3453758 3453905 -159146025 + AluJo SINE Alu 128 294 -18 1487 211 43 0 chrX 3455261 3455560 -159144370 - AluJo SINE Alu 0 312 1 2169 98 0 0 chrX 3455744 3456018 -159143912 + AluSx SINE Alu 1 274 -38 2434 76 3 17 chrX 3456020 3456322 -159143608 - AluSq SINE Alu -15 298 1 1378 144 5 5 chrX 3456324 3456532 -159143398 + AluJb SINE Alu 102 309 -3 2286 88 0 14 chrX 3456802 3457099 -159142831 - AluSc SINE Alu -16 293 1 30 0 0 0 chrX 3457110 3457140 -159142790 + AT_rich Low_complexity Low_complexity 1 30 0 866 122 0 29 chrX 3457142 3457281 -159142649 - L1MA2 LINE L1 0 6304 6170 1598 199 0 0 chrX 3457300 3457566 -159142364 - AluJo SINE Alu -24 288 23 2445 104 0 0 chrX 3458048 3458357 -159141573 - AluSx SINE Alu -3 309 1 886 156 0 21 chrX 3458448 3458589 -159141341 + FLAM_C SINE Alu 1 138 -5 2586 54 0 0 chrX 3458656 3458953 -159140977 + AluY SINE Alu 1 297 -14 2118 110 0 4 chrX 3459101 3459415 -159140515 + AluSg SINE Alu 1 313 0 195 42 0 0 chrX 3460267 3460291 -159139639 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1801 184 0 7 chrX 3460313 3460612 -159139318 + AluJo SINE Alu 1 297 -15 330 87 0 0 chrX 3460886 3460932 -159138998 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1793 178 10 24 chrX 3460932 3461230 -159138700 - AluJo SINE Alu -18 294 1 1536 165 3 93 chrX 3461715 3462048 -159137882 + AluJo SINE Alu 1 303 -9 1374 144 137 46 chrX 3462258 3462521 -159137409 - AluJo SINE Alu -17 295 9 183 100 0 0 chrX 3463274 3463304 -159136626 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2430 85 0 0 chrX 3463307 3463626 -159136304 - L1PA13 LINE L1 -19 6144 5826 198 0 0 0 chrX 3463626 3463648 -159136282 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1164 196 36 5 chrX 3463648 3463868 -159136062 - AluJo SINE Alu -28 284 58 2394 89 0 3 chrX 3463877 3464179 -159135751 - AluY SINE Alu -10 301 1 1923 117 3 57 chrX 3464215 3464543 -159135387 - AluSq SINE Alu 0 316 5 215 163 0 20 chrX 3465324 3465373 -159134557 + T-rich Low_complexity Low_complexity 2 49 0 305 314 0 59 chrX 3465915 3466017 -159133913 + L1MC4 LINE L1 6614 6709 -1333 * 324 252 37 30 chrX 3465938 3466053 -159133877 - L1MCa LINE L1 -1337 6985 1973 234 154 66 22 chrX 3466091 3466182 -159133748 + (TA)n Simple_repeat Simple_repeat 1 95 0 1383 72 0 0 chrX 3466191 3466357 -159133573 + AluSg SINE Alu 1 166 -144 682 158 9 11 chrX 3466373 3466534 -159133396 + L1PB4 LINE L1 5782 5901 -255 25 102 0 0 chrX 3466534 3466622 -159133308 + AT_rich Low_complexity Low_complexity 1 88 0 316 194 0 82 chrX 3466625 3466723 -159133207 - L1MC4 LINE L1 -1339 6703 6614 183 129 0 0 chrX 3466723 3466754 -159133176 + (CA)n Simple_repeat Simple_repeat 2 32 0 1265 163 112 47 chrX 3466800 3467076 -159132854 - AluJb SINE Alu -8 294 1 281 229 33 57 chrX 3468300 3468422 -159131508 + MER53 DNA DNA 37 155 -34 314 297 69 14 chrX 3468533 3468678 -159131252 - L1MD2 LINE L1 -1 6358 6206 1048 110 0 14 chrX 3468853 3468998 -159130932 + AluSq/x SINE Alu 1 143 -170 30 45 0 0 chrX 3469422 3469466 -159130464 + GC_rich Low_complexity Low_complexity 1 44 0 315 243 20 15 chrX 3471055 3471262 -159128668 + CT-rich Low_complexity Low_complexity 1 208 0 2069 102 0 7 chrX 3472317 3472592 -159127338 + AluSx SINE Alu 1 273 -39 1620 183 23 20 chrX 3472903 3473204 -159126726 + AluJb SINE Alu 1 302 -10 374 297 61 0 chrX 3473621 3473786 -159126144 - L1MD3 LINE L1 -19 7976 7802 1121 129 0 23 chrX 3473787 3473958 -159125972 - FRAM SINE Alu -10 166 1 344 260 7 84 chrX 3473958 3474112 -159125818 - L1MD2 LINE L1 -176 6183 6042 2108 99 57 0 chrX 3474126 3474408 -159125522 - AluSp SINE Alu -15 298 1 2052 164 23 3 chrX 3474619 3474973 -159124957 - MLT1A1 LTR MaLR -4 361 1 209 106 0 64 chrX 3475323 3475370 -159124560 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 449 167 0 0 chrX 3475400 3475472 -159124458 - FLAM_A SINE Alu -26 116 45 199 333 30 30 chrX 3475474 3475573 -159124357 + L2 LINE L2 3191 3289 -24 315 286 95 19 chrX 3475591 3475696 -159124234 + MER81 DNA DNA 1 113 -1 1885 148 7 13 chrX 3475837 3476141 -159123789 - AluJb SINE Alu -4 308 7 728 157 35 0 chrX 3476380 3476495 -159123435 + AluJb SINE Alu 176 294 -18 1722 162 17 24 chrX 3476504 3476801 -159123129 + AluJo SINE Alu 1 295 -17 2469 64 0 19 chrX 3476999 3477310 -159122620 + AluY SINE Alu 1 305 -6 1737 194 14 14 chrX 3477564 3477914 -159122016 + MLT1A1 LTR MaLR 14 363 -2 240 292 0 0 chrX 3478004 3478069 -159121861 - MLT1E2 LTR MaLR 0 626 562 1285 169 8 8 chrX 3478071 3478319 -159121611 + L1MA6 LINE L1 5675 5922 -378 1699 142 31 17 chrX 3478320 3478608 -159121322 - AluJb SINE Alu -20 292 1 2101 134 3 13 chrX 3479019 3479333 -159120597 + AluSx SINE Alu 1 311 -1 1132 124 0 28 chrX 3479684 3479861 -159120069 - FRAM SINE Alu -9 167 1 1730 179 10 17 chrX 3480007 3480303 -159119627 + AluJb SINE Alu 13 306 -6 4199 101 0 0 chrX 3480860 3481414 -159118516 - MER41A LTR ERV1 0 554 1 1897 168 24 0 chrX 3481592 3481890 -159118040 + AluJo SINE Alu 8 312 0 1671 158 39 32 chrX 3482088 3482218 -159117712 + AluJb SINE Alu 1 129 -183 207 0 0 0 chrX 3482218 3482241 -159117689 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1671 158 39 32 chrX 3482241 3482420 -159117510 + AluJb SINE Alu 129 312 0 189 196 0 0 chrX 3482428 3482474 -159117456 + A-rich Low_complexity Low_complexity 1 46 0 315 296 22 7 chrX 3482605 3482740 -159117190 - L1M4 LINE L1 -2910 3236 3100 2285 107 0 16 chrX 3483337 3483654 -159116276 + AluSx SINE Alu 1 312 0 2242 112 3 3 chrX 3483655 3483958 -159115972 + AluSx SINE Alu 2 304 -8 263 71 0 0 chrX 3483984 3484026 -159115904 + Alu SINE Alu 258 299 -1 2083 109 6 64 chrX 3484100 3484430 -159115500 + AluSx SINE Alu 1 311 -1 200 100 25 0 chrX 3484443 3484483 -159115447 + (CAA)n Simple_repeat Simple_repeat 2 42 0 784 149 0 71 chrX 3484506 3484647 -159115283 + FLAM_C SINE Alu 3 133 0 1700 179 3 19 chrX 3485140 3485448 -159114482 + AluJo SINE Alu 1 303 -9 1700 187 0 39 chrX 3485607 3485917 -159114013 - AluJb SINE Alu -12 300 3 2003 131 7 0 chrX 3485931 3486253 -159113677 - AluSx SINE Alu 0 324 1 1924 162 17 8 chrX 3486334 3486685 -159113245 + MER47A DNA MER2_type 13 366 0 1897 125 39 0 chrX 3486685 3486996 -159112934 - MLT1A1 LTR MaLR -32 333 11 1984 124 7 0 chrX 3487315 3487590 -159112340 + AluJo SINE Alu 36 312 0 204 363 26 18 chrX 3487781 3487894 -159112036 + L2 LINE L2 2181 2294 -1020 1257 244 64 33 chrX 3487966 3488388 -159111542 - MLT1C LTR MaLR -27 440 6 663 176 60 166 chrX 3488403 3488554 -159111376 - MLT1C LTR MaLR -122 345 180 2177 91 3 30 chrX 3488554 3488882 -159111048 - AluSq SINE Alu 0 313 5 663 176 60 166 chrX 3488882 3489021 -159110909 - MLT1C LTR MaLR -287 180 102 2636 51 0 10 chrX 3489021 3489335 -159110595 - AluY SINE Alu 0 311 1 663 176 60 166 chrX 3489335 3489423 -159110507 - MLT1C LTR MaLR -365 102 6 2564 67 0 0 chrX 3490164 3490463 -159109467 + AluY SINE Alu 1 299 -12 539 219 8 8 chrX 3490464 3490592 -159109338 - MER3 DNA MER1_type -80 129 2 745 238 52 9 chrX 3490602 3490812 -159109118 + MER20 DNA MER1_type 1 219 0 303 191 0 0 chrX 3490830 3490898 -159109032 + CT-rich Low_complexity Low_complexity 1 68 0 307 191 26 17 chrX 3490921 3491036 -159108894 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 237 149 0 21 chrX 3491092 3491139 -159108791 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 308 131 0 16 chrX 3491139 3491200 -159108730 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 737 231 42 46 chrX 3491204 3491420 -159108510 + MER20 DNA MER1_type 1 215 -4 537 237 63 90 chrX 3491591 3491994 -159107936 + LTR15 LTR ERV1 112 596 0 1841 168 7 0 chrX 3492236 3492540 -159107390 - AluJb SINE Alu -6 306 1 347 220 0 20 chrX 3492880 3492980 -159106950 - L1MB7 LINE L1 0 6184 6087 2466 82 0 0 chrX 3492990 3493295 -159106635 - AluY SINE Alu -6 305 1 1640 177 21 7 chrX 3493305 3493588 -159106342 - AluJo SINE Alu -24 288 2 1781 146 13 48 chrX 3494101 3494410 -159105520 - AluJo SINE Alu -14 298 1 2303 104 0 0 chrX 3494530 3494827 -159105103 - AluSx SINE Alu -15 297 1 1530 141 0 4 chrX 3494830 3495057 -159104873 - AluSg/x SINE Alu -2 310 85 1473 149 86 4 chrX 3495693 3495961 -159103969 + AluJo SINE Alu 3 292 -20 685 143 0 61 chrX 3495981 3496128 -159103802 + L1MB3 LINE L1 6045 6182 -1 2326 86 3 10 chrX 3496140 3496441 -159103489 + AluSx SINE Alu 7 305 -7 813 182 8 0 chrX 3496455 3496587 -159103343 + FLAM_C SINE Alu 1 133 0 1900 154 0 7 chrX 3496926 3497225 -159102705 - AluJb SINE Alu -13 299 3 284 253 12 12 chrX 3497302 3497385 -159102545 - L1ME1 LINE L1 -22 6144 6062 264 246 254 7 chrX 3497437 3497575 -159102355 - MIR SINE MIR -12 250 79 501 187 23 12 chrX 3497629 3497800 -159102130 + GA-rich Low_complexity Low_complexity 4 176 0 2253 127 0 6 chrX 3497874 3498188 -159101742 + AluSx SINE Alu 1 312 0 1087 168 24 0 chrX 3498191 3498400 -159101530 + MLT1B LTR MaLR 172 385 -5 2452 90 0 3 chrX 3498709 3499020 -159100910 - AluSg SINE Alu 0 310 1 1868 156 10 16 chrX 3499122 3499436 -159100494 - AluJo SINE Alu 0 312 1 1333 224 68 30 chrX 3499796 3500224 -159099706 - MLT1C LTR MaLR -23 444 1 409 212 223 0 chrX 3500234 3500427 -159099503 - MLT1C LTR MaLR -122 345 110 323 120 0 120 chrX 3500439 3500514 -159099416 - FLAM SINE Alu 0 133 68 281 191 64 4 chrX 3500496 3500563 -159099367 - Alu SINE Alu -249 53 1 * 410 250 10 0 chrX 3500563 3500663 -159099267 - MLT1C LTR MaLR -363 104 4 23 0 0 0 chrX 3501310 3501333 -159098597 + AT_rich Low_complexity Low_complexity 1 23 0 1604 156 21 10 chrX 3501333 3501621 -159098309 - AluSx SINE Alu -21 291 1 1237 174 123 8 chrX 3501638 3501891 -159098039 - AluJb SINE Alu -30 282 1 185 0 40 0 chrX 3501891 3501916 -159098014 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1388 155 7 69 chrX 3501916 3502220 -159097710 - AluJo SINE Alu -27 285 1 2094 97 0 0 chrX 3502547 3502826 -159097104 + AluSx SINE Alu 1 279 -33 306 0 0 0 chrX 3502826 3502860 -159097070 + (CAA)n Simple_repeat Simple_repeat 2 35 0 703 290 74 7 chrX 3503243 3503526 -159096404 - MER46C DNA MER2_type -32 306 5 1897 187 11 6 chrX 3503575 3503934 -159095996 + L1PA16 LINE L1 5806 6166 0 289 275 0 14 chrX 3504080 3504149 -159095781 - MLT1J LTR MaLR -328 183 116 1067 149 17 6 chrX 3505492 3505673 -159094257 + AluJb SINE Alu 129 311 -1 2191 184 13 33 chrX 3505749 3505937 -159093993 - L1MA9 LINE L1 -191 6121 5931 2513 114 3 14 chrX 3505937 3506305 -159093625 - THE1B LTR MaLR 0 364 1 2191 184 13 33 chrX 3506305 3506568 -159093362 - L1MA9 LINE L1 -381 5931 5679 513 126 0 2 chrX 3506954 3507161 -159092769 + AluJo SINE Alu 9 250 -62 329 129 0 16 chrX 3507255 3507317 -159092613 + (GGA)n Simple_repeat Simple_repeat 3 63 0 470 244 6 0 chrX 3507400 3507556 -159092374 + GA-rich Low_complexity Low_complexity 1 157 0 246 105 0 0 chrX 3507977 3508015 -159091915 + (TC)n Simple_repeat Simple_repeat 2 39 0 2078 154 38 3 chrX 3508908 3509252 -159090678 - MLT1A1 LTR MaLR -5 360 5 186 133 0 0 chrX 3509953 3509983 -159089947 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1299 180 120 11 chrX 3509986 3510253 -159089677 - AluJo SINE Alu -4 298 3 263 191 0 21 chrX 3510299 3510346 -159089584 + MLT1C LTR MaLR 422 467 0 23 54 0 0 chrX 3510748 3510785 -159089145 + AT_rich Low_complexity Low_complexity 1 37 0 893 172 6 0 chrX 3510793 3510956 -159088974 - AluJb SINE Alu -26 286 123 22 56 0 0 chrX 3510956 3510992 -159088938 + AT_rich Low_complexity Low_complexity 1 36 0 1284 201 123 4 chrX 3511017 3511285 -159088645 - AluJo SINE Alu -2 300 1 913 124 0 0 chrX 3511596 3511725 -159088205 + FLAM_C SINE Alu 1 129 -4 1456 132 4 0 chrX 3511739 3511966 -159087964 + AluSg/x SINE Alu 83 310 0 1790 150 3 0 chrX 3512150 3512436 -159087494 + AluJb SINE Alu 5 291 -21 583 266 31 36 chrX 3512913 3513105 -159086825 - MER20 DNA MER1_type -28 191 1 393 216 47 18 chrX 3513106 3513277 -159086653 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 840 204 31 62 chrX 3513387 3513612 -159086318 - MER20 DNA MER1_type -1 218 1 450 0 0 0 chrX 3513624 3513674 -159086256 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 401 131 77 36 chrX 3513715 3513883 -159086047 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 925 224 28 9 chrX 3513893 3514107 -159085823 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chrX 3514583 3514604 -159085326 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 3514795 3514835 -159085095 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrX 3515717 3515740 -159084190 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chrX 3515994 3516018 -159083912 + AT_rich Low_complexity Low_complexity 1 24 0 1718 166 0 19 chrX 3516058 3516365 -159083565 - AluJo SINE Alu -9 303 3 707 207 0 0 chrX 3516366 3516501 -159083429 - AluJo SINE Alu -176 136 2 2375 69 0 7 chrX 3516535 3516838 -159083092 + AluY SINE Alu 1 301 -10 939 134 0 0 chrX 3516849 3516991 -159082939 + AluSg/x SINE Alu 168 309 -1 2025 175 25 55 chrX 3516997 3517472 -159082458 - L1MB3 LINE L1 -63 6120 5660 1280 170 4 0 chrX 3517495 3517724 -159082206 - AluSg/x SINE Alu -10 302 73 411 218 0 0 chrX 3517796 3517897 -159082033 + (CA)n Simple_repeat Simple_repeat 1 101 0 1855 191 12 29 chrX 3518018 3518432 -159081498 - L1PB4 LINE L1 -1 6155 5749 244 191 29 29 chrX 3518439 3518455 -159081475 + L1P5 LINE L1 5476 5491 -663 1631 183 0 13 chrX 3518455 3518767 -159081163 + AluJo SINE Alu 3 310 -2 244 191 29 29 chrX 3518767 3518818 -159081112 + L1P5 LINE L1 5490 5543 -611 191 263 88 120 chrX 3519164 3519338 -159080592 + L2 LINE L2 2347 2514 -800 1416 222 13 0 chrX 3519338 3519522 -159080408 - AluJo SINE Alu -6 306 115 387 0 0 0 chrX 3519522 3519565 -159080365 + (TG)n Simple_repeat Simple_repeat 2 44 0 1416 222 13 0 chrX 3519565 3519682 -159080248 - AluJo SINE Alu -197 115 1 191 263 88 120 chrX 3519682 3519724 -159080206 + L2 LINE L2 2514 2556 -758 755 169 0 0 chrX 3519852 3519970 -159079960 + AluJo/FLAM SINE Alu 2 119 -193 1466 199 31 0 chrX 3519970 3520262 -159079668 - AluJo SINE Alu -7 305 5 2412 81 0 0 chrX 3520268 3520577 -159079353 - AluY SINE Alu -2 309 1 828 141 15 0 chrX 3520577 3520712 -159079218 - AluJo SINE Alu -175 137 1 1581 167 39 0 chrX 3521381 3521663 -159078267 - AluJo SINE Alu -16 296 4 229 185 31 0 chrX 3522055 3522120 -159077810 + CT-rich Low_complexity Low_complexity 4 70 0 1313 86 11 5 chrX 3523090 3523277 -159076653 + AluSg/x SINE Alu 125 312 0 1514 171 51 14 chrX 3523715 3524008 -159075922 - AluJo SINE Alu -8 304 1 1642 176 3 17 chrX 3524403 3524698 -159075232 + AluJb SINE Alu 1 291 -21 2228 90 7 0 chrX 3524700 3525000 -159074930 + AluSq SINE Alu 1 302 -11 1672 183 13 6 chrX 3525414 3525731 -159074199 - MLT1B LTR MaLR 0 390 72 1280 229 42 11 chrX 3525867 3526221 -159073709 + MLT1A1 LTR MaLR 1 365 0 1764 173 0 22 chrX 3528210 3528528 -159071402 + AluJb SINE Alu 2 312 0 245 96 62 48 chrX 3528606 3528752 -159071178 + (TA)n Simple_repeat Simple_repeat 1 148 0 527 41 67 58 chrX 3528778 3529381 -159070549 + (TA)n Simple_repeat Simple_repeat 1 608 0 341 211 105 0 chrX 3529446 3529541 -159070389 - MLT2B2 LTR ERVL -410 105 1 1962 159 17 11 chrX 3529545 3529904 -159070026 - MLT1A1 LTR MaLR -1 364 4 1935 191 16 0 chrX 3529953 3530319 -159069611 - MLT1B LTR MaLR -18 372 1 1302 96 0 0 chrX 3530379 3530556 -159069374 - AluSg/x SINE Alu -2 308 132 2351 77 0 0 chrX 3530557 3530854 -159069076 - AluY SINE Alu -14 297 1 679 140 0 0 chrX 3530854 3530961 -159068969 - L1PB1 LINE L1 -117 6034 5928 323 224 19 28 chrX 3530964 3531071 -159068859 - Charlie5 DNA MER1_type -273 2339 2234 276 237 30 59 chrX 3531057 3531192 -159068738 - Charlie5 DNA MER1_type -2476 136 6 * 2053 139 0 0 chrX 3532084 3532394 -159067536 - AluJb SINE Alu -2 310 1 2536 42 3 0 chrX 3532441 3532751 -159067179 - AluY SINE Alu 0 311 1 1776 173 3 6 chrX 3532821 3533133 -159066797 - AluJo SINE Alu -1 311 1 485 131 12 0 chrX 3533134 3533218 -159066712 + CT-rich Low_complexity Low_complexity 1 85 0 1001 127 0 6 chrX 3533219 3533400 -159066530 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1316 146 13 34 chrX 3533715 3533948 -159065982 - MER46A DNA MER2_type -7 229 2 781 191 0 0 chrX 3534051 3534192 -159065738 - FLAM_C SINE Alu 0 143 3 468 0 0 0 chrX 3534332 3534384 -159065546 + (CA)n Simple_repeat Simple_repeat 1 52 0 258 309 49 16 chrX 3534386 3534509 -159065421 - L1MC5 LINE L1 -69 7892 7766 326 143 0 100 chrX 3534602 3534672 -159065258 + AluJo SINE Alu 85 147 -155 * 804 222 125 0 chrX 3534671 3534847 -159065083 + MER58A DNA MER1_type 27 224 0 1642 235 5 3 chrX 3534900 3535292 -159064638 + L1MB3 LINE L1 5790 6182 -1 294 243 35 18 chrX 3535294 3535463 -159064467 + (TA)n Simple_repeat Simple_repeat 2 173 0 80 70 0 0 chrX 3535500 3535657 -159064273 + AT_rich Low_complexity Low_complexity 1 157 0 226 296 23 6 chrX 3535716 3535892 -159064038 + (TA)n Simple_repeat Simple_repeat 2 180 0 2068 120 7 3 chrX 3536670 3536978 -159062952 - AluSg SINE Alu -1 309 1 702 151 36 130 chrX 3536988 3537044 -159062886 - L1MB5 LINE L1 -1 6179 6119 1591 182 0 7 chrX 3537044 3537340 -159062590 - AluJo SINE Alu -18 294 1 702 151 36 130 chrX 3537340 3537475 -159062455 - L1MB5 LINE L1 -61 6119 6006 492 198 116 16 chrX 3537475 3537596 -159062334 - MLT1C LTR MaLR -327 140 8 1593 188 3 13 chrX 3538566 3538875 -159061055 - AluJo SINE Alu -6 306 1 1295 139 60 0 chrX 3539620 3539821 -159060109 - LTR36 LTR ERV1 0 611 399 2104 112 3 22 chrX 3539960 3540274 -159059656 - AluSx SINE Alu -4 308 1 180 0 0 0 chrX 3540346 3540366 -159059564 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1566 160 110 10 chrX 3540372 3540571 -159059359 - L1PA15 LINE L1 -21 6144 5946 414 179 193 50 chrX 3540571 3540711 -159059219 - L1MA4 LINE L1 -362 5938 5779 718 99 9 9 chrX 3541435 3541546 -159058384 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chrX 3541552 3541576 -159058354 + AT_rich Low_complexity Low_complexity 1 24 0 4244 122 18 0 chrX 3541731 3542355 -159057575 - MER41B LTR ERV1 0 635 1 256 239 15 15 chrX 3543318 3543385 -159056545 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 443 256 10 0 chrX 3543399 3543704 -159056226 + (CCCA)n Simple_repeat Simple_repeat 1 308 0 858 180 0 0 chrX 3543707 3543885 -159056045 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 220 195 26 39 chrX 3543929 3544083 -159055847 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 518 207 23 0 chrX 3544096 3544270 -159055660 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 22 35 0 0 chrX 3544731 3544760 -159055170 + AT_rich Low_complexity Low_complexity 1 29 0 2068 98 23 10 chrX 3544929 3545236 -159054694 + AluSx SINE Alu 1 311 -1 523 235 0 13 chrX 3545857 3546010 -159053920 + CT-rich Low_complexity Low_complexity 4 154 0 341 58 0 39 chrX 3546018 3546070 -159053860 + (TTTCC)n Simple_repeat Simple_repeat 1 50 0 419 143 16 0 chrX 3546073 3546136 -159053794 - AluSp/q SINE Alu -41 272 209 2056 94 0 4 chrX 3546138 3546413 -159053517 - AluSx SINE Alu -38 274 1 1940 164 0 10 chrX 3547100 3547404 -159052526 + AluJo SINE Alu 1 301 -11 300 314 0 0 chrX 3547579 3547665 -159052265 + Charlie1 DNA MER1_type 2350 2435 -326 651 256 32 97 chrX 3547729 3547987 -159051943 - Charlie1 DNA MER1_type 0 2761 2538 1701 149 13 49 chrX 3547987 3548295 -159051635 + AluJb SINE Alu 1 297 -15 651 256 32 97 chrX 3548295 3548447 -159051483 - Charlie1 DNA MER1_type -223 2538 2378 30 21 0 21 chrX 3548701 3548730 -159051200 + AT_rich Low_complexity Low_complexity 1 30 -17 2131 126 0 0 chrX 3548730 3549023 -159050907 - AluSx SINE Alu -19 293 1 30 21 0 21 chrX 3549023 3549041 -159050889 + AT_rich Low_complexity Low_complexity 30 47 0 1756 158 13 16 chrX 3549401 3549704 -159050226 - AluJo SINE Alu -2 310 9 1890 128 3 102 chrX 3549711 3550055 -159049875 - AluJo SINE Alu -2 310 1 1298 237 93 32 chrX 3551035 3551474 -159048456 - MLT1C LTR MaLR -1 466 1 806 236 146 37 chrX 3551484 3551806 -159048124 - MLT1C LTR MaLR -122 345 5 1933 137 137 34 chrX 3552093 3552408 -159047522 + MSTA LTR MaLR 1 365 -63 2519 66 0 3 chrX 3552408 3552713 -159047217 - AluY SINE Alu -7 304 1 1933 137 137 34 chrX 3552713 3552785 -159047145 + MSTA LTR MaLR 365 428 0 1082 185 15 10 chrX 3553133 3553333 -159046597 + AluJo SINE Alu 97 297 -15 222 352 0 0 chrX 3553351 3553422 -159046508 - L2 LINE L2 -1 3271 3201 1636 156 0 59 chrX 3553437 3553744 -159046186 + AluJb SINE Alu 5 293 -19 1922 132 4 0 chrX 3553960 3554232 -159045698 - AluSx SINE Alu -39 273 1 1259 164 19 0 chrX 3554234 3554447 -159045483 - AluJb SINE Alu -9 303 87 5877 138 12 38 chrX 3554451 3555227 -159044703 - L1MA5A LINE L1 0 6297 5503 1971 138 3 10 chrX 3555227 3555523 -159044407 + AluJb SINE Alu 1 294 -18 5877 138 12 38 chrX 3555523 3555579 -159044351 - L1MA5A LINE L1 -794 5503 5447 2349 76 0 7 chrX 3555579 3555869 -159044061 - AluSq SINE Alu -3 310 23 5877 138 12 38 chrX 3555869 3556089 -159043841 - L1MA5A LINE L1 -850 5447 5271 21 36 0 0 chrX 3557086 3557114 -159042816 + AT_rich Low_complexity Low_complexity 1 28 0 2201 116 0 0 chrX 3557120 3557414 -159042516 + AluY SINE Alu 1 294 -17 1769 170 3 26 chrX 3558064 3558375 -159041555 + AluJo SINE Alu 1 304 -8 703 180 0 50 chrX 3558772 3558911 -159041019 - FLAM_C SINE Alu -1 132 1 1515 173 3 21 chrX 3559415 3559698 -159040232 - AluJo SINE Alu -14 298 21 21 0 0 0 chrX 3559750 3559771 -159040159 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrX 3559803 3559839 -159040091 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chrX 3560616 3560644 -159039286 + AT_rich Low_complexity Low_complexity 1 28 0 1816 153 0 19 chrX 3560828 3561135 -159038795 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 3561868 3561892 -159038038 + AT_rich Low_complexity Low_complexity 1 24 0 623 277 5 29 chrX 3562049 3562255 -159037675 - L1MB8 LINE L1 0 6178 5978 1547 110 239 146 chrX 3562255 3562564 -159037366 - Charlie3 DNA MER1_type 0 2712 2 1262 217 7 7 chrX 3562565 3562855 -159037075 - L1MB8 LINE L1 -190 5984 5695 439 255 19 9 chrX 3562724 3562890 -159037040 - L1PA13 LINE L1 -336 5825 5662 * 1257 226 100 25 chrX 3563207 3563606 -159036324 - MLT1C LTR MaLR -17 450 22 1080 212 91 39 chrX 3563634 3563964 -159035966 - MLT1C LTR MaLR -120 347 1 1892 149 38 54 chrX 3564361 3564529 -159035401 - L1MA8 LINE L1 0 6291 6122 793 160 0 0 chrX 3564529 3564654 -159035276 - FLAM_C SINE Alu -7 126 2 1892 149 38 54 chrX 3564654 3564909 -159035021 - L1MA8 LINE L1 -169 6122 5875 430 145 14 0 chrX 3564951 3565020 -159034910 + AluSg/x SINE Alu 211 280 -32 1115 197 136 15 chrX 3565037 3565301 -159034629 - Tigger3(Golem) DNA MER2_type -2733 296 1 1872 140 10 13 chrX 3565324 3565624 -159034306 - AluJo SINE Alu -9 303 5 415 218 15 30 chrX 3565688 3565821 -159034109 + (TA)n Simple_repeat Simple_repeat 1 131 0 520 216 0 22 chrX 3565826 3566007 -159033923 + (TATG)n Simple_repeat Simple_repeat 2 178 0 242 289 25 55 chrX 3566623 3566761 -159033169 + MIR3 SINE MIR 28 162 -46 318 96 22 0 chrX 3567400 3567457 -159032473 - L1M2 LINE L1 -505 5786 5724 2045 156 0 0 chrX 3567672 3567979 -159031951 + AluJb SINE Alu 1 307 -5 313 233 14 0 chrX 3568010 3568083 -159031847 - MIR SINE MIR -119 143 70 2981 160 35 28 chrX 3568097 3568479 -159031451 - L1MA4A LINE L1 -28 6275 5883 1992 115 44 10 chrX 3568479 3568775 -159031155 - AluSx SINE Alu -6 306 1 2981 160 35 28 chrX 3568775 3568967 -159030963 - L1MA4A LINE L1 -420 5883 5694 215 304 108 20 chrX 3568996 3569098 -159030832 + MER5B DNA MER1_type 6 116 -62 2180 119 0 31 chrX 3569107 3569426 -159030504 - AluSx SINE Alu -1 311 3 563 214 42 117 chrX 3569568 3569810 -159030120 - L1MC4a LINE L1 -1759 6049 5833 2437 87 7 0 chrX 3569810 3570120 -159029810 - AluSx SINE Alu 0 312 1 563 214 42 117 chrX 3570120 3570185 -159029745 - L1MC4a LINE L1 -1975 5833 5765 1646 175 11 11 chrX 3570200 3570486 -159029444 - AluJo SINE Alu -26 286 1 28 29 0 0 chrX 3571323 3571358 -159028572 + AT_rich Low_complexity Low_complexity 1 35 0 2306 91 3 7 chrX 3572494 3572792 -159027138 - AluSx SINE Alu -15 297 1 1693 195 7 3 chrX 3573235 3573527 -159026403 + AluJb SINE Alu 1 293 -19 2277 103 3 0 chrX 3573530 3573832 -159026098 + AluSq SINE Alu 1 303 -10 438 53 0 0 chrX 3574367 3574424 -159025506 + (TG)n Simple_repeat Simple_repeat 2 58 0 1951 157 3 3 chrX 3574809 3575115 -159024815 + AluJb SINE Alu 1 306 -6 753 165 31 0 chrX 3575185 3575312 -159024618 + FLAM_C SINE Alu 2 132 -1 675 148 0 9 chrX 3575625 3575733 -159024197 + U6 snRNA snRNA 1 107 0 2346 74 17 3 chrX 3576316 3576615 -159023315 + AluSx SINE Alu 1 303 -9 183 80 0 0 chrX 3577326 3577351 -159022579 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 432 0 0 0 chrX 3577930 3577978 -159021952 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 255 51 19 chrX 3578683 3578784 -159021146 - MER58A DNA MER1_type -2197 223 127 1520 189 28 7 chrX 3578784 3579075 -159020855 + AluJo SINE Alu 6 302 -10 707 255 51 19 chrX 3579075 3579189 -159020741 - MER58A DNA MER1_type -2293 127 1 228 67 0 0 chrX 3579952 3579982 -159019948 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1603 158 0 26 chrX 3579983 3580255 -159019675 - AluJo SINE Alu -32 280 16 310 185 61 21 chrX 3580545 3580890 -159019040 + (TA)n Simple_repeat Simple_repeat 1 358 0 29 0 0 0 chrX 3580908 3580937 -159018993 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrX 3581122 3581150 -159018780 + AT_rich Low_complexity Low_complexity 1 28 0 2867 131 42 17 chrX 3581152 3581415 -159018515 - L1MA5A LINE L1 -6 6291 6036 2331 111 0 0 chrX 3581415 3581712 -159018218 + AluSg SINE Alu 1 297 -13 2867 131 42 17 chrX 3581712 3581974 -159017956 - L1MA5A LINE L1 -261 6036 5753 1847 170 0 19 chrX 3581978 3582289 -159017641 - AluJb SINE Alu -5 307 3 300 182 299 26 chrX 3582382 3582536 -159017394 - L1MB2 LINE L1 -7 6164 5969 180 0 0 0 chrX 3583904 3583924 -159016006 + (T)n Simple_repeat Simple_repeat 1 20 0 657 197 100 120 chrX 3584266 3584565 -159015365 - MER101 LTR ERV1 0 474 182 315 241 0 27 chrX 3584580 3584692 -159015238 - MER101 LTR ERV1 -186 288 180 256 294 16 32 chrX 3584809 3584935 -159014995 - MER101 LTR ERV1 -186 288 165 1120 199 3 77 chrX 3584944 3585231 -159014699 - MER101 LTR ERV1 -198 276 11 2749 39 0 3 chrX 3585482 3585794 -159014136 - AluY SINE Alu 0 311 1 33 25 0 0 chrX 3585880 3585920 -159014010 + AT_rich Low_complexity Low_complexity 1 40 0 865 160 0 0 chrX 3586089 3586214 -159013716 + AluJo SINE Alu 90 214 -98 289 126 32 42 chrX 3586245 3586340 -159013590 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 1023 167 31 50 chrX 3586358 3586580 -159013350 - MER20 DNA MER1_type 0 219 2 495 307 100 28 chrX 3587263 3587742 -159012188 + L2 LINE L2 2729 3245 -68 378 258 44 107 chrX 3587805 3587968 -159011962 - L1MC4a LINE L1 -1958 5850 5713 2224 104 7 0 chrX 3587968 3588267 -159011663 + AluSq SINE Alu 1 301 -12 378 258 44 107 chrX 3588267 3588401 -159011529 - L1MC4a LINE L1 -2095 5713 5572 2177 115 0 0 chrX 3588402 3588688 -159011242 - AluJb SINE Alu -16 296 11 2154 137 83 21 chrX 3588699 3589086 -159010844 - L1MA7 LINE L1 -342 5949 5539 2533 70 0 0 chrX 3589213 3589512 -159010418 + AluSq SINE Alu 1 299 -14 2301 99 0 0 chrX 3589792 3590096 -159009834 - AluSq SINE Alu -9 304 1 4505 96 19 3 chrX 3590333 3590967 -159008963 + LTR9B LTR ERV1 1 644 0 198 0 0 0 chrX 3591085 3591107 -159008823 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1735 130 0 20 chrX 3591141 3591394 -159008536 + AluJo SINE Alu 4 251 -61 2121 89 36 30 chrX 3591394 3591691 -159008239 - LTR7 LTR ERV1 0 450 104 2583 58 0 6 chrX 3591691 3592004 -159007926 - AluY SINE Alu 0 311 1 2121 89 36 30 chrX 3592004 3592073 -159007857 - LTR7 LTR ERV1 -346 104 37 272 109 0 0 chrX 3592061 3592107 -159007823 + AluJo SINE Alu 257 302 0 * 452 183 113 35 chrX 3592122 3592237 -159007693 + MER63 DNA MER1_type 2 751 -311 2283 92 3 52 chrX 3592267 3592592 -159007338 - AluSq SINE Alu -4 309 1 2225 170 18 8 chrX 3593087 3593486 -159006444 + MER57A LTR ERV1 1 403 0 1654 149 51 14 chrX 3593694 3593969 -159005961 - AluJo SINE Alu -17 295 11 1991 131 24 0 chrX 3593988 3594278 -159005652 - AluSx SINE Alu -15 297 1 2423 81 7 0 chrX 3594343 3594641 -159005289 - AluY SINE Alu -11 300 1 2180 120 0 19 chrX 3594928 3595253 -159004677 - LTR8 LTR ERV1 -372 319 1 1914 140 3 29 chrX 3595977 3596285 -159003645 - AluJo SINE Alu -11 301 2 636 168 0 0 chrX 3596613 3596720 -159003210 - MER53 DNA DNA 0 189 83 933 194 6 0 chrX 3598161 3598321 -159001609 - Charlie3 DNA MER1_type -2546 164 4 539 157 0 0 chrX 3598706 3598795 -159001135 - MER4B LTR ERV1 -163 447 359 25 0 0 0 chrX 3598802 3598827 -159001103 + AT_rich Low_complexity Low_complexity 1 25 0 397 233 3 30 chrX 3598827 3599138 -159000792 + CT-rich Low_complexity Low_complexity 1 302 0 2056 131 10 0 chrX 3599683 3599981 -158999949 - AluJb SINE Alu -7 305 5 694 202 131 0 chrX 3600665 3600833 -158999097 - MER20 DNA MER1_type 0 219 30 2354 130 25 5 chrX 3601643 3602011 -158997919 - THE1C LTR MaLR 0 375 1 2066 158 0 0 chrX 3603206 3603577 -158996353 - AluSx SINE Alu 0 371 1 1750 197 16 35 chrX 3603709 3604079 -158995851 - MLT1A1 LTR MaLR -2 363 1 31 26 0 0 chrX 3604287 3604325 -158995605 + AT_rich Low_complexity Low_complexity 1 38 0 2333 102 0 0 chrX 3604492 3604787 -158995143 - AluSx SINE Alu -17 295 1 1790 164 0 32 chrX 3606364 3606674 -158993256 + AluJo SINE Alu 1 300 -12 1270 164 19 5 chrX 3607412 3607625 -158992305 + AluJb SINE Alu 73 288 -24 259 224 34 34 chrX 3607625 3607804 -158992126 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 30 0 0 chrX 3607810 3607843 -158992087 + AT_rich Low_complexity Low_complexity 1 33 0 253 230 13 0 chrX 3607843 3607995 -158991935 + (TA)n Simple_repeat Simple_repeat 1 154 0 417 100 86 14 chrX 3609074 3609144 -158990786 + MLT2B1 LTR ERVL 354 428 -92 767 180 33 27 chrX 3609144 3609294 -158990636 - AluJb SINE Alu -49 263 113 269 255 118 0 chrX 3609330 3609432 -158990498 + L2 LINE L2 3197 3310 -3 355 279 41 8 chrX 3609704 3609826 -158990104 - MLT1H LTR MaLR 0 549 424 * 438 288 8 0 chrX 3609816 3609941 -158989989 + MER20 DNA MER1_type 90 215 -4 656 125 19 10 chrX 3610030 3610134 -158989796 - U6 snRNA snRNA -2 105 1 232 320 0 48 chrX 3610222 3610347 -158989583 - MLT1H-int LTR MaLR -1616 119 1 393 287 65 51 chrX 3610350 3610567 -158989363 - MLT1H LTR MaLR -3 548 333 610 224 59 51 chrX 3610603 3610906 -158989024 + MLT1H1 LTR MaLR 243 547 -2 1495 166 121 10 chrX 3611202 3611515 -158988415 - MER7A DNA MER2_type 0 346 1 4426 121 11 2 chrX 3611552 3612180 -158987750 - MER41B LTR ERV1 0 635 2 1193 123 0 3 chrX 3612615 3612976 -158986954 + (TA)n Simple_repeat Simple_repeat 1 359 0 193 286 79 0 chrX 3613807 3613870 -158986060 - L2 LINE L2 0 3313 3246 395 143 30 48 chrX 3614334 3614502 -158985428 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 454 171 22 39 chrX 3614552 3614733 -158985197 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1597 134 28 0 chrX 3614908 3615155 -158984775 + L1MA7 LINE L1 5682 5935 -356 688 261 28 6 chrX 3615175 3615355 -158984575 - MER20 DNA MER1_type -6 213 30 807 174 0 0 chrX 3615497 3615629 -158984301 + AluJb SINE Alu 1 132 -180 1741 166 28 3 chrX 3615636 3615920 -158984010 + AluJb SINE Alu 6 296 -16 4274 110 23 2 chrX 3616070 3616690 -158983240 + MER41B LTR ERV1 1 633 -2 1960 157 0 7 chrX 3617099 3617404 -158982526 - AluJo SINE Alu -9 303 1 1969 187 7 12 chrX 3617416 3617822 -158982108 - L1MA3 LINE L1 0 6305 5902 1816 137 41 47 chrX 3617846 3618061 -158981869 - L1PB3 LINE L1 0 6154 5940 1804 163 0 7 chrX 3618061 3618350 -158981580 - AluJb SINE Alu -21 291 5 1816 137 41 47 chrX 3618350 3618477 -158981453 - L1PB3 LINE L1 -214 5940 5814 753 240 73 5 chrX 3618483 3618687 -158981243 + MER20 DNA MER1_type 1 218 -1 913 111 0 0 chrX 3618693 3618810 -158981120 + AluSp SINE Alu 1 117 -196 267 31 0 0 chrX 3619069 3619101 -158980829 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2882 57 5 94 chrX 3619690 3619923 -158980007 - L1PA10 LINE L1 -294 5874 5696 1840 81 76 0 chrX 3619923 3620159 -158979771 - AluSq SINE Alu -59 254 1 2882 57 5 94 chrX 3620159 3620361 -158979569 - L1PA10 LINE L1 -472 5696 5478 1252 71 130 0 chrX 3620361 3620545 -158979385 + L1PA10 LINE L1 5959 6166 -2 1677 209 30 5 chrX 3620769 3621142 -158978788 + L1MB5 LINE L1 5792 6173 -1 2059 133 3 0 chrX 3621153 3621500 -158978430 + AluSx SINE Alu 1 312 0 1623 138 7 67 chrX 3621731 3622028 -158977902 + AluSx SINE Alu 5 283 -29 350 130 0 0 chrX 3622223 3622277 -158977653 - MADE1 DNA Mariner -1 79 26 218 226 0 16 chrX 3622299 3622361 -158977569 + (TA)n Simple_repeat Simple_repeat 2 62 0 34 0 0 0 chrX 3622362 3622396 -158977534 + AT_rich Low_complexity Low_complexity 1 34 0 320 140 20 0 chrX 3622494 3622544 -158977386 - MER20 DNA MER1_type -1 218 168 1025 227 31 14 chrX 3622562 3622816 -158977114 - MLT2D LTR ERVL -39 481 128 2724 88 58 21 chrX 3622829 3623261 -158976669 + LTR7 LTR ERV1 1 448 -2 4608 114 68 39 chrX 3623263 3624262 -158975668 + HERVH LTR ERV1 1 903 -6810 5328 14 2 0 chrX 3624289 3624883 -158975047 - L1PA2 LINE L1 -5 6150 5556 3454 12 5 0 chrX 3624884 3625444 -158974486 + L1PA2 LINE L1 4987 5550 -605 14831 90 11 8 chrX 3625444 3627527 -158972403 + HERVH LTR ERV1 899 2987 -4726 931 128 20 0 chrX 3627521 3627669 -158972261 + HERVH LTR ERV1 3140 3290 -4423 * 3472 111 0 6 chrX 3627659 3628164 -158971766 + HERVH LTR ERV1 3492 3993 -3720 4332 137 11 3 chrX 3628166 3628823 -158971107 + HERVH LTR ERV1 4488 5149 -2564 1420 110 23 14 chrX 3628824 3629042 -158970888 + HERVH LTR ERV1 5600 5819 -1894 * 2746 64 45 0 chrX 3629040 3629415 -158970515 + HERVH LTR ERV1 7322 7713 0 2626 99 58 21 chrX 3629415 3629847 -158970083 + LTR7 LTR ERV1 1 448 -2 321 213 8 134 chrX 3629850 3629977 -158969953 - MLT2D LTR ERVL -302 112 2 236 88 0 0 chrX 3629978 3630012 -158969918 - MLT2B2 LTR ERVL -481 34 1 228 136 0 23 chrX 3630012 3630046 -158969884 - MLT2C2 LTR ERVL -431 33 1 996 187 31 58 chrX 3630100 3630325 -158969605 + MER20 DNA MER1_type 1 219 0 24 77 0 0 chrX 3630418 3630470 -158969460 + AT_rich Low_complexity Low_complexity 1 52 0 705 161 15 8 chrX 3630552 3630682 -158969248 - MLT1A1 LTR MaLR -234 131 1 328 229 0 0 chrX 3630729 3630799 -158969131 + MER69 DNA AcHobo 2456 2525 -1 26 0 0 0 chrX 3631007 3631033 -158968897 + AT_rich Low_complexity Low_complexity 1 26 0 367 118 0 0 chrX 3631041 3631092 -158968838 - AluSx SINE Alu -7 295 245 23 0 0 0 chrX 3631092 3631115 -158968815 + AT_rich Low_complexity Low_complexity 1 23 0 1653 197 3 3 chrX 3631121 3631416 -158968514 - AluJo SINE Alu -17 295 1 430 197 0 0 chrX 3631856 3631927 -158968003 - MER81 DNA DNA -21 93 23 2657 165 0 52 chrX 3632009 3632115 -158967815 - MER66A LTR ERV1 0 478 368 1893 99 4 0 chrX 3632115 3632357 -158967573 - AluSx SINE Alu -59 253 11 2657 165 0 52 chrX 3632357 3632754 -158967176 - MER66A LTR ERV1 -110 368 1 683 214 35 23 chrX 3633077 3633250 -158966680 - MER20 DNA MER1_type -26 193 19 258 32 0 0 chrX 3633607 3633638 -158966292 + (GA)n Simple_repeat Simple_repeat 1 31 0 2214 102 7 0 chrX 3634718 3635011 -158964919 - AluSx SINE Alu -17 295 1 907 131 0 65 chrX 3635178 3635331 -158964599 - FLAM_C SINE Alu 0 143 1 913 112 176 70 chrX 3635711 3635898 -158964032 + AluJo SINE Alu 85 291 -21 1008 112 0 17 chrX 3635987 3636166 -158963764 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 180 111 0 0 chrX 3637099 3637126 -158962804 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1793 167 0 17 chrX 3637584 3637878 -158962052 - AluJo SINE Alu -11 301 13 2080 134 0 10 chrX 3637892 3638205 -158961725 - AluJb SINE Alu -2 310 1 915 172 7 0 chrX 3638209 3638360 -158961570 - MLT1A1 LTR MaLR -213 152 1 1741 157 0 38 chrX 3638977 3639137 -158960793 - AluJo SINE Alu -24 288 123 225 0 0 0 chrX 3639137 3639162 -158960768 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chrX 3639161 3639188 -158960742 + (GA)n Simple_repeat Simple_repeat 2 28 0 1741 157 0 38 chrX 3639162 3639188 -158960742 - AluJo SINE Alu -189 123 98 2252 90 0 0 chrX 3639188 3639465 -158960465 - AluY SINE Alu -34 277 1 1741 157 0 38 chrX 3639465 3639590 -158960340 - AluJo SINE Alu -214 98 13 2778 83 14 3 chrX 3640330 3640690 -158959240 + THE1B LTR MaLR 1 364 0 260 269 215 0 chrX 3840979 3841109 -158758821 + MLT2B1 LTR ERVL 5 162 -358 456 222 0 0 chrX 3841119 3841209 -158758721 - L1M2 LINE L1 -724 5588 5499 183 129 0 0 chrX 3841267 3841298 -158758632 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 152 0 0 chrX 3841361 3841407 -158758523 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1777 175 0 20 chrX 3841408 3841705 -158758225 - AluJo SINE Alu -21 291 1 408 190 131 73 chrX 3841712 3841838 -158758092 - MLT1D LTR MaLR -329 176 43 2015 148 38 40 chrX 3841838 3842330 -158757600 + LTR1B LTR ERV1 1 525 -301 992 338 113 21 chrX 3842441 3843122 -158756808 + L2 LINE L2 855 1598 -1716 1128 167 57 33 chrX 3843214 3843280 -158756650 + MLT1A1 LTR MaLR 1 64 -301 2114 158 25 0 chrX 3843280 3843634 -158756296 - THE1B LTR MaLR 0 364 2 1128 167 57 33 chrX 3843634 3843812 -158756118 + MLT1A1 LTR MaLR 64 251 -114 288 146 0 73 chrX 3843916 3844039 -158755891 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 301 184 0 126 chrX 3844045 3844148 -158755782 - L1MC4 LINE L1 -1339 6703 6614 * 317 270 11 11 chrX 3844060 3844149 -158755781 + L1MC4 LINE L1 6614 6702 -1340 1524 200 21 14 chrX 3844181 3844549 -158755381 - MER47B DNA MER2_type 0 418 1 312 200 13 27 chrX 3844577 3844683 -158755247 + (TA)n Simple_repeat Simple_repeat 1 106 -42 1832 127 66 33 chrX 3844683 3845046 -158754884 + THE1C LTR MaLR 1 375 0 312 200 13 27 chrX 3845046 3845089 -158754841 + (TA)n Simple_repeat Simple_repeat 106 148 0 1519 183 23 17 chrX 3845138 3845439 -158754491 - AluJb SINE Alu -9 303 1 333 254 15 15 chrX 3845467 3845601 -158754329 + (TA)n Simple_repeat Simple_repeat 2 135 0 614 322 152 39 chrX 3845862 3846375 -158753555 + L2 LINE L2 1720 2290 -1024 2404 142 22 52 chrX 3846384 3846828 -158753102 + Tigger2a DNA MER2_type 1 431 -3 301 265 147 5 chrX 3846904 3847115 -158752815 - L1M4 LINE L1 -3194 2952 2712 1896 138 3 22 chrX 3847119 3847468 -158752462 - MER4A LTR ERV1 -3 661 261 572 134 21 10 chrX 3847468 3847565 -158752365 - MER4A LTR ERV1 -566 98 1 311 265 56 47 chrX 3847565 3847780 -158752150 - L1M4 LINE L1 -3432 2714 2498 341 123 18 0 chrX 3848782 3848839 -158751091 + Tigger3(Golem) DNA MER2_type 2916 2973 -56 364 138 0 0 chrX 3848956 3849014 -158750916 + Tigger3(Golem) DNA MER2_type 2917 2974 -55 24 0 0 0 chrX 3849038 3849062 -158750868 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 3849573 3849595 -158750335 + AT_rich Low_complexity Low_complexity 1 22 0 2057 113 23 13 chrX 3849782 3850091 -158749839 + AluSq SINE Alu 1 312 -1 223 170 55 24 chrX 3851064 3851232 -158748698 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 248 217 63 21 chrX 3851284 3851427 -158748503 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 301 194 51 40 chrX 3851462 3851637 -158748293 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 369 202 0 0 chrX 3851849 3851923 -158748007 - MLT1D LTR MaLR -327 178 111 508 277 31 6 chrX 3852017 3852176 -158747754 - MIR SINE MIR 0 262 100 739 218 7 0 chrX 3852966 3853200 -158746730 - AluJb SINE Alu 0 374 140 2206 129 0 0 chrX 3853205 3853507 -158746423 - AluSx SINE Alu -9 303 2 2376 107 0 0 chrX 3853513 3853822 -158746108 - AluSq SINE Alu -4 309 1 1844 159 10 0 chrX 3854321 3854611 -158745319 - AluJo SINE Alu -19 293 1 1923 164 31 82 chrX 3854765 3855216 -158744714 - MSTC LTR MaLR 0 428 1 1510 175 133 6 chrX 3855364 3855695 -158744235 + MSTA LTR MaLR 1 373 -55 262 312 168 70 chrX 3855823 3856441 -158743489 - L2 LINE L2 -2634 680 2 979 261 17 17 chrX 3857599 3857944 -158741986 + L1MA9 LINE L1 5943 6287 -25 183 222 0 0 chrX 3857966 3858011 -158741919 + (TA)n Simple_repeat Simple_repeat 1 45 0 2389 83 0 3 chrX 3858992 3859292 -158740638 - AluSq SINE Alu -14 299 1 1657 161 7 4 chrX 3860113 3860393 -158739537 - AluJo SINE Alu -10 302 22 488 181 14 21 chrX 3860527 3860671 -158739259 + CT-rich Low_complexity Low_complexity 3 145 0 1499 215 13 0 chrX 3860874 3861388 -158738542 - AluJb SINE Alu 0 518 1 185 50 0 75 chrX 3861388 3861400 -158738530 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 3861696 3861718 -158738212 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 3861996 3862020 -158737910 + AT_rich Low_complexity Low_complexity 1 24 0 1073 262 115 49 chrX 3862744 3863171 -158736759 - LTR40a LTR ERVL 0 519 65 1847 168 0 7 chrX 3863218 3863540 -158736390 - AluJb SINE Alu 0 312 1 194 255 108 39 chrX 3864273 3864375 -158735555 + MIR SINE MIR 54 162 -100 673 216 211 15 chrX 3864395 3864594 -158735336 + MLT1A1 LTR MaLR 1 238 -127 1078 115 0 0 chrX 3864701 3864857 -158735073 + AluSp/q SINE Alu 156 311 -2 349 186 70 39 chrX 3864879 3865035 -158734895 + Charlie1 DNA MER1_type 2572 2732 -29 326 153 36 29 chrX 3865057 3865194 -158734736 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 2318 88 3 0 chrX 3865263 3865560 -158734370 - AluSx SINE Alu -14 298 1 411 284 100 50 chrX 3865593 3865832 -158734098 + MIR SINE MIR 5 255 -7 654 204 6 16 chrX 3866104 3866618 -158733312 + GA-rich Low_complexity Low_complexity 1 508 0 212 240 42 21 chrX 3867901 3867997 -158731933 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 28 0 0 0 chrX 3868386 3868414 -158731516 + AT_rich Low_complexity Low_complexity 1 28 0 596 124 21 10 chrX 3868901 3868998 -158730932 + MER4A LTR ERV1 1 98 -566 1524 164 184 40 chrX 3868998 3869351 -158730579 + MER4A LTR ERV1 261 664 0 203 171 0 0 chrX 3869359 3869400 -158730530 + GA-rich Low_complexity Low_complexity 1 41 0 791 154 0 28 chrX 3870297 3870440 -158729490 - LTR7 LTR ERV1 -311 139 1 22 0 0 0 chrX 3870470 3870492 -158729438 + AT_rich Low_complexity Low_complexity 1 22 0 2308 114 29 24 chrX 3870565 3870943 -158728987 + Tigger2a DNA MER2_type 1 380 -54 2779 197 12 25 chrX 3870945 3871508 -158728422 + L1PA16 LINE L1 5607 6162 -4 2340 118 25 6 chrX 3872031 3872388 -158727542 + THE1B LTR MaLR 1 364 0 1159 241 25 97 chrX 3872471 3873026 -158726904 - L1ME3A LINE L1 -5 6165 5651 808 117 7 36 chrX 3873706 3873843 -158726087 + THE1C LTR MaLR 1 133 -242 910 213 28 21 chrX 3873953 3874191 -158725739 + LTR1B LTR ERV1 545 826 0 185 350 8 51 chrX 3874308 3874425 -158725505 + L2 LINE L2 2940 3051 -221 916 190 27 36 chrX 3875464 3875685 -158724245 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 3875698 3875718 -158724212 + (T)n Simple_repeat Simple_repeat 1 20 0 3445 172 120 33 chrX 3876260 3877020 -158722910 + LTR1B LTR ERV1 1 826 0 231 145 66 0 chrX 3877576 3877652 -158722278 + (TATAG)n Simple_repeat Simple_repeat 5 85 0 253 161 18 18 chrX 3877844 3877900 -158722030 + L1MA5A LINE L1 6034 6089 -208 1448 191 70 29 chrX 3877901 3878556 -158721374 + LTR8A LTR ERV1 1 724 -3 1107 96 71 0 chrX 3878556 3878754 -158721176 + L1MA5A LINE L1 6084 6295 -2 228 361 56 21 chrX 3878883 3879027 -158720903 - L2 LINE L2 -189 3083 2935 282 206 22 65 chrX 3879857 3880041 -158719889 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 295 178 74 22 chrX 3880004 3880139 -158719791 + (TA)n Simple_repeat Simple_repeat 1 142 0 304 239 60 12 chrX 3880239 3880406 -158719524 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 405 175 33 55 chrX 3880389 3880572 -158719358 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 323 86 63 46 chrX 3880645 3880819 -158719111 + (TA)n Simple_repeat Simple_repeat 2 178 0 234 326 167 60 chrX 3881910 3882426 -158717504 + L2 LINE L2 1268 1838 -1476 204 184 31 0 chrX 3883681 3883779 -158716151 + (TA)n Simple_repeat Simple_repeat 1 101 0 324 0 0 0 chrX 3883829 3883865 -158716065 + (CA)n Simple_repeat Simple_repeat 2 37 0 651 173 48 7 chrX 3883866 3883983 -158715947 + (TCTA)n Simple_repeat Simple_repeat 1 112 -496 2235 131 0 0 chrX 3883983 3884295 -158715635 - AluSx SINE Alu 0 312 1 651 173 48 7 chrX 3884295 3884451 -158715479 + (TCTA)n Simple_repeat Simple_repeat 112 608 0 581 73 85 18 chrX 3884506 3884670 -158715260 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 729 102 40 23 chrX 3884690 3884867 -158715063 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 200 125 25 25 chrX 3884934 3884974 -158714956 + CT-rich Low_complexity Low_complexity 2 41 0 26 0 0 0 chrX 3886635 3886661 -158713269 + AT_rich Low_complexity Low_complexity 1 26 0 521 206 16 24 chrX 3887541 3887758 -158712172 + CT-rich Low_complexity Low_complexity 1 218 -314 1521 197 7 10 chrX 3887758 3888048 -158711882 - AluJb SINE Alu -23 289 1 521 206 16 24 chrX 3888048 3888078 -158711852 + CT-rich Low_complexity Low_complexity 218 532 0 790 75 47 31 chrX 3888803 3889059 -158710871 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 21 57 0 0 chrX 3889566 3889601 -158710329 + AT_rich Low_complexity Low_complexity 1 35 0 3064 147 49 9 chrX 3889717 3890290 -158709640 - L1MA4 LINE L1 -5 6295 5700 884 140 6 13 chrX 3890492 3890649 -158709281 - L1MA4 LINE L1 -593 5710 5555 2126 140 19 22 chrX 3890656 3891021 -158708909 - THE1B LTR MaLR 0 364 1 2131 145 0 0 chrX 3891418 3891715 -158708215 + AluSx SINE Alu 1 297 -15 1979 143 0 16 chrX 3892298 3892606 -158707324 - AluSx SINE Alu -9 303 1 2349 107 0 0 chrX 3893228 3893536 -158706394 - AluSx SINE Alu -4 308 1 330 45 0 0 chrX 3894792 3894836 -158705094 + U5 snRNA snRNA 1 44 -72 501 66 0 13 chrX 3895085 3895161 -158704769 + L1PB3 LINE L1 6073 6147 -7 1291 191 46 8 chrX 3895722 3895963 -158703967 - AluJo SINE Alu -61 251 2 185 105 0 26 chrX 3896074 3896112 -158703818 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 334 167 69 35 chrX 3896134 3896278 -158703652 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 21 0 0 0 chrX 3896932 3896953 -158702977 + AT_rich Low_complexity Low_complexity 1 21 0 462 291 172 28 chrX 3896997 3897434 -158702496 + L1ME3 LINE L1 3901 4400 -1746 311 252 16 8 chrX 3897459 3897582 -158702348 + L1ME3 LINE L1 4534 4657 -1489 30 0 0 0 chrX 3897833 3897863 -158702067 + AT_rich Low_complexity Low_complexity 1 30 0 2132 136 0 0 chrX 3897990 3898291 -158701639 + AluSx SINE Alu 1 304 -8 324 0 0 0 chrX 3898291 3898327 -158701603 + (TA)n Simple_repeat Simple_repeat 2 37 0 369 287 27 18 chrX 3899121 3899344 -158700586 + L1ME3 LINE L1 5725 5949 -213 3103 232 33 33 chrX 3899485 3900449 -158699481 + MER45B DNA AcHobo 1 964 -76 1133 214 0 0 chrX 3900455 3900661 -158699269 - MER58A DNA MER1_type -6 218 13 337 166 63 46 chrX 3904006 3904181 -158695749 + (TA)n Simple_repeat Simple_repeat 2 179 0 247 107 67 0 chrX 3904197 3904272 -158695658 + (TA)n Simple_repeat Simple_repeat 2 81 0 545 225 12 0 chrX 3904311 3904471 -158695459 + (CATA)n Simple_repeat Simple_repeat 1 162 0 2376 223 25 14 chrX 3904930 3905495 -158694435 - MER7C DNA MER2_type 0 602 32 269 179 30 30 chrX 3905560 3905627 -158694303 - MLT1C LTR MaLR 0 467 401 1164 149 0 0 chrX 3905630 3905798 -158694132 + AluSg/x SINE Alu 135 302 -8 539 275 25 35 chrX 3905818 3906018 -158693912 - MLT1C LTR MaLR -176 291 94 1103 247 32 23 chrX 3906415 3906768 -158693162 - MER87 LTR ERV1 -9 547 174 552 125 0 0 chrX 3906794 3906874 -158693056 + AluS SINE Alu 1 80 -233 338 106 0 0 chrX 3906875 3906922 -158693008 - Alu SINE Alu -254 47 1 1821 176 0 3 chrX 3906922 3907218 -158692712 - AluJo SINE Alu -12 300 6 699 210 7 0 chrX 3907227 3907370 -158692560 - L1PB4 LINE L1 -3 6153 6010 2314 124 65 10 chrX 3907394 3907797 -158692133 - MSTA LTR MaLR 0 428 4 2198 113 0 7 chrX 3909344 3909645 -158690285 + AluSx SINE Alu 1 299 -13 1777 171 7 0 chrX 3909789 3910087 -158689843 + AluJb SINE Alu 1 300 -12 631 254 86 62 chrX 3910294 3910679 -158689251 + L1ME3A LINE L1 5714 6107 -63 2303 92 0 7 chrX 3911225 3911519 -158688411 + AluSx SINE Alu 1 292 -20 228 35 0 0 chrX 3911579 3911608 -158688322 + (CA)n Simple_repeat Simple_repeat 1 29 0 2370 75 3 3 chrX 3911968 3912263 -158687667 + AluSp SINE Alu 1 295 -18 255 355 70 25 chrX 3915132 3915332 -158684598 + L2 LINE L2 223 431 -2883 3804 141 25 45 chrX 3917012 3917795 -158682135 + L1PB4 LINE L1 5386 6153 -3 2218 102 3 0 chrX 3917880 3918191 -158681739 - AluSp SINE Alu 0 312 1 242 29 29 0 chrX 3918604 3918639 -158681291 + (TG)n Simple_repeat Simple_repeat 1 36 0 3885 229 20 28 chrX 3918643 3919449 -158680481 - L1MC3 LINE L1 -935 6850 6040 1571 177 35 41 chrX 3919449 3919794 -158680136 - MER2 DNA MER2_type 0 344 2 3885 229 20 28 chrX 3919794 3920038 -158679892 - L1MC3 LINE L1 -1745 6040 5806 1006 231 104 24 chrX 3920038 3920209 -158679721 - MLT1A1 LTR MaLR 0 365 209 180 0 0 0 chrX 3920209 3920229 -158679701 + (GA)n Simple_repeat Simple_repeat 2 21 0 1006 231 104 24 chrX 3920229 3920395 -158679535 - MLT1A1 LTR MaLR -156 209 1 3885 229 20 28 chrX 3920395 3920432 -158679498 - L1MC3 LINE L1 -1979 5806 5770 1118 199 4 17 chrX 3920896 3921132 -158678798 - MLT1D LTR MaLR -3 502 270 207 0 0 0 chrX 3921184 3921207 -158678723 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1159 228 28 53 chrX 3921214 3921499 -158678431 - AluJo SINE Alu -34 278 1 681 262 26 47 chrX 3921504 3921756 -158678174 - MLT1D LTR MaLR -295 210 18 557 214 38 13 chrX 3921815 3921974 -158677956 + L1MA9 LINE L1 6112 6274 -38 1192 225 8 19 chrX 3921988 3922250 -158677680 + AluJo SINE Alu 47 305 -7 256 339 85 28 chrX 3924198 3924375 -158675555 + MER5A DNA MER1_type 1 187 -2 186 43 0 0 chrX 3924450 3924473 -158675457 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1351 218 39 105 chrX 3925154 3925667 -158674263 - LTR8 LTR ERV1 0 691 213 602 152 0 9 chrX 3925743 3925848 -158674082 + LTR24B LTR ERV1 1 104 -472 339 226 19 19 chrX 3925893 3925999 -158673931 + L1MA10 LINE L1 6228 6333 -1 2735 180 21 16 chrX 3926052 3926618 -158673312 - LTR24B LTR ERV1 -7 569 1 2079 191 5 2 chrX 3926618 3927023 -158672907 + LTR49 LTR ERV1 30 435 -160 232 130 148 19 chrX 3927009 3927063 -158672867 + LTR48 LTR ERV1 607 667 -120 * 2654 184 39 66 chrX 3927100 3927230 -158672700 + LTR8A LTR ERV1 34 166 -561 1832 163 3 7 chrX 3927230 3927530 -158672400 - AluJb SINE Alu -9 303 5 2654 184 39 66 chrX 3927530 3928112 -158671818 + LTR8A LTR ERV1 166 727 0 462 125 12 12 chrX 3928121 3928201 -158671729 + LTR49 LTR ERV1 516 595 0 1208 210 64 42 chrX 3928279 3928467 -158671463 + MLT1A2 LTR MaLR 1 202 -172 4600 119 16 13 chrX 3928467 3929156 -158670774 + LTR8 LTR ERV1 1 691 0 1208 210 64 42 chrX 3929156 3929324 -158670606 + MLT1A2 LTR MaLR 202 365 -9 941 246 81 44 chrX 3929446 3930009 -158669921 - LTR24B LTR ERV1 -7 569 1 243 152 0 0 chrX 3930116 3930162 -158669768 + (TG)n Simple_repeat Simple_repeat 1 46 0 2000 153 44 8 chrX 3930263 3930718 -158669212 - MER61E LTR ERV1 -40 461 1 1573 185 92 3 chrX 3930921 3931256 -158668674 - MLT1A1 LTR MaLR 0 365 1 1566 206 0 3 chrX 3931739 3932021 -158667909 - AluJb SINE Alu -31 281 1 1921 134 7 7 chrX 3933438 3933728 -158666202 + AluSx SINE Alu 1 290 -22 433 236 236 78 chrX 3933761 3934296 -158665634 - MER92B LTR ERV1 -8 628 10 361 21 0 0 chrX 3934464 3934511 -158665419 - MER41B LTR ERV1 -108 527 481 2947 150 35 4 chrX 3934675 3935194 -158664736 + LTR39 LTR ERV1 1 535 -248 3615 104 11 11 chrX 3935194 3935753 -158664177 - PABL_A LTR ERV1 0 660 102 1248 134 49 45 chrX 3935861 3936107 -158663823 + THE1B LTR MaLR 118 364 0 299 313 77 15 chrX 3936183 3936378 -158663552 - ERVL LTR ERVL -1545 4219 4013 222 214 0 0 chrX 3937760 3937802 -158662128 + GA-rich Low_complexity Low_complexity 2 43 0 2226 104 14 0 chrX 3937910 3938199 -158661731 + AluSx SINE Alu 1 293 -19 201 143 0 0 chrX 3938448 3938483 -158661447 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 796 176 6 6 chrX 3938483 3938659 -158661271 + GA-rich Low_complexity Low_complexity 3 178 0 770 167 21 0 chrX 3938670 3938907 -158661023 + GA-rich Low_complexity Low_complexity 1 242 0 1376 91 11 0 chrX 3940342 3940518 -158659412 + AluSx SINE Alu 2 179 -133 959 62 78 0 chrX 3940598 3940727 -158659203 + MER85 DNA T2_type 1 139 0 23 0 0 0 chrX 3940957 3940980 -158658950 + AT_rich Low_complexity Low_complexity 1 23 0 244 327 86 67 chrX 3941786 3942147 -158657783 - L2 LINE L2 0 3313 2946 2143 141 0 0 chrX 3942299 3942597 -158657333 - AluSx SINE Alu -14 298 1 29 78 0 0 chrX 3943428 3943492 -158656438 + AT_rich Low_complexity Low_complexity 1 64 0 318 132 0 0 chrX 3943816 3943869 -158656061 + (TG)n Simple_repeat Simple_repeat 2 54 0 2474 53 0 38 chrX 3944044 3944362 -158655568 + AluY SINE Alu 1 306 -5 970 126 6 55 chrX 3944905 3944929 -158655001 - L1MA2 LINE L1 -5 6299 6275 2561 105 6 3 chrX 3944929 3945290 -158654640 + THE1B LTR MaLR 3 364 0 970 126 6 55 chrX 3945290 3945447 -158654483 - L1MA2 LINE L1 -29 6275 6127 397 293 37 111 chrX 3945519 3945789 -158654141 + L2 LINE L2 969 1218 -2096 2239 149 3 0 chrX 3945854 3946222 -158653708 - L1PB4 LINE L1 -6 6150 5782 1026 92 17 11 chrX 3946237 3946411 -158653519 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2000 143 0 4 chrX 3946411 3946691 -158653239 - AluSx SINE Alu -33 279 1 664 208 0 34 chrX 3946691 3946840 -158653090 - FRAM SINE Alu -21 155 12 237 65 0 0 chrX 3946862 3946893 -158653037 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6399 197 10 26 chrX 3946896 3947585 -158652345 - L1PA15 LINE L1 -5 6160 5462 2338 70 0 17 chrX 3947585 3947885 -158652045 - AluY SINE Alu -16 295 1 6399 197 10 26 chrX 3947885 3948056 -158651874 - L1PA15 LINE L1 -703 5462 5290 1892 137 3 36 chrX 3948056 3948383 -158651547 - AluSx SINE Alu 0 312 1 6399 197 10 26 chrX 3948383 3949845 -158650085 - L1PA15 LINE L1 -875 5290 3882 2154 84 7 10 chrX 3949985 3950281 -158649649 - AluY SINE Alu -14 297 3 1915 157 0 25 chrX 3950395 3950714 -158649216 + AluJo SINE Alu 1 311 -1 429 310 74 77 chrX 3950873 3951237 -158648693 + L2 LINE L2 1970 2332 -982 1607 178 20 26 chrX 3951699 3952081 -158647849 + L1MB3 LINE L1 5659 5998 -185 404 181 29 3 chrX 3952052 3952146 -158647784 + L1MB3 LINE L1 6060 6143 -28 * 1509 205 0 35 chrX 3952149 3952437 -158647493 + AluJo SINE Alu 7 284 -28 23 33 0 0 chrX 3952484 3952514 -158647416 + AT_rich Low_complexity Low_complexity 1 30 0 413 370 31 43 chrX 3952570 3952919 -158647011 + L2 LINE L2 2570 2914 -400 2085 129 24 12 chrX 3953036 3953377 -158646553 + MLT1A1 LTR MaLR 1 345 -20 1973 120 3 17 chrX 3953439 3953739 -158646191 - AluSg SINE Alu -14 296 1 1630 164 58 0 chrX 3955199 3955473 -158644457 + AluJb SINE Alu 1 290 -22 1278 173 0 18 chrX 3956573 3956799 -158643131 + AluJo SINE Alu 83 304 -8 2260 118 0 0 chrX 3956838 3957135 -158642795 + AluSx SINE Alu 1 297 -15 327 200 0 15 chrX 3957203 3957268 -158642662 - MLT1E2 LTR MaLR -5 621 558 973 156 0 0 chrX 3957268 3957409 -158642521 + FRAM SINE Alu 20 160 -16 324 186 0 14 chrX 3957416 3957486 -158642444 - MLT1B LTR MaLR -67 438 370 2486 180 39 34 chrX 3957486 3957643 -158642287 - L1MB3 LINE L1 -56 6127 5972 4969 76 8 13 chrX 3957643 3958314 -158641616 + PABL_B LTR ERV1 1 667 0 2486 180 39 34 chrX 3958314 3958403 -158641527 - L1MB3 LINE L1 -211 5972 5885 2102 177 18 0 chrX 3958403 3958799 -158641131 + MER57A LTR ERV1 1 403 0 2486 180 39 34 chrX 3958799 3959117 -158640813 - L1MB3 LINE L1 -298 5885 5559 2050 98 0 4 chrX 3959218 3959484 -158640446 - AluSq SINE Alu -48 265 1 1631 184 0 27 chrX 3959501 3959795 -158640135 - AluJb SINE Alu -24 288 3 939 193 6 0 chrX 3959797 3959973 -158639957 - MLT1B LTR MaLR -213 177 1 1167 136 5 35 chrX 3960728 3960951 -158638979 - AluJo SINE Alu 0 306 90 1828 179 0 0 chrX 3961114 3961438 -158638492 + L1MA9 LINE L1 5464 5787 -525 606 123 29 29 chrX 3961448 3961619 -158638311 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 634 130 11 43 chrX 3961662 3961846 -158638084 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1266 228 72 70 chrX 3961847 3962317 -158637613 + L1MA9 LINE L1 5804 6274 -38 21 0 0 0 chrX 3962318 3962339 -158637591 + AT_rich Low_complexity Low_complexity 1 21 0 776 156 0 15 chrX 3962594 3962729 -158637201 + FLAM_C SINE Alu 1 133 -10 1590 160 0 70 chrX 3963751 3964051 -158635879 + AluJo SINE Alu 1 279 -33 357 24 0 0 chrX 3965376 3965418 -158634512 + (TA)n Simple_repeat Simple_repeat 1 42 0 780 130 22 29 chrX 3965528 3965666 -158634264 - AluJo SINE Alu -175 137 1 280 85 21 0 chrX 3966617 3966664 -158633266 - MADE1 DNA Mariner 0 80 33 207 100 0 0 chrX 3966924 3966954 -158632976 + (A)n Simple_repeat Simple_repeat 1 30 0 286 179 0 0 chrX 3967733 3967789 -158632141 + L1MA9 LINE L1 5943 5998 -191 1160 194 48 39 chrX 3967863 3968023 -158631907 + L1MA9 LINE L1 5995 6152 -160 459 0 0 0 chrX 3968023 3968074 -158631856 + (CA)n Simple_repeat Simple_repeat 1 51 0 1160 194 48 39 chrX 3968074 3968094 -158631836 + L1MA9 LINE L1 6152 6170 -142 2473 169 50 67 chrX 3968094 3968717 -158631213 - LTR9 LTR ERV1 0 612 1 1160 194 48 39 chrX 3968717 3968845 -158631085 + L1MA9 LINE L1 6170 6307 -5 23 0 0 0 chrX 3969392 3969415 -158630515 + AT_rich Low_complexity Low_complexity 1 23 0 723 118 31 16 chrX 3969525 3969762 -158630168 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 868 139 10 19 chrX 3969800 3970117 -158629813 + (TCTA)n Simple_repeat Simple_repeat 1 313 0 467 182 7 26 chrX 3970140 3970294 -158629636 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 323 179 8 12 chrX 3970302 3970425 -158629505 - Tigger2 DNA MER2_type 0 2718 2554 * 772 208 19 51 chrX 3970424 3970640 -158629290 - Tigger2 DNA MER2_type -2508 210 2 696 285 112 19 chrX 3971189 3971456 -158628474 - MLT1E LTR MaLR -11 582 291 731 136 32 16 chrX 3971952 3972077 -158627853 + FLAM_A SINE Alu 16 142 0 334 267 159 11 chrX 3972147 3972323 -158627607 + L1ME3A LINE L1 5311 5512 -650 1814 179 0 0 chrX 3972356 3972668 -158627262 + AluJo SINE Alu 1 312 0 470 308 77 15 chrX 3972673 3972946 -158626984 + L1ME3A LINE L1 5594 5883 -287 2539 59 3 0 chrX 3972953 3973258 -158626672 + AluY SINE Alu 1 306 -5 236 264 33 41 chrX 3973302 3973423 -158626507 + L1ME3A LINE L1 6046 6165 -5 2272 88 3 7 chrX 3973861 3974166 -158625764 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 3976168 3976564 -158623366 - L1PA16 LINE L1 -45 6121 5688 2377 90 10 0 chrX 3976564 3976865 -158623065 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 3976865 3976911 -158623019 - L1PA16 LINE L1 -478 5688 5647 23 86 0 0 chrX 3976936 3976994 -158622936 + AT_rich Low_complexity Low_complexity 1 58 0 571 213 0 0 chrX 3977843 3977951 -158621979 - AluJb SINE Alu -23 289 182 25 0 0 0 chrX 3977962 3977987 -158621943 + AT_rich Low_complexity Low_complexity 1 25 0 729 160 8 0 chrX 3978050 3978175 -158621755 + MER57A LTR ERV1 2 127 -276 269 239 11 54 chrX 3978339 3978431 -158621499 + (CATA)n Simple_repeat Simple_repeat 4 91 0 236 322 0 0 chrX 3978431 3978521 -158621409 - L1MC4 LINE L1 -1339 6703 6614 346 194 0 60 chrX 3978526 3978849 -158621081 + (TA)n Simple_repeat Simple_repeat 1 303 0 219 226 9 17 chrX 3978887 3978940 -158620990 + (TA)n Simple_repeat Simple_repeat 1 53 -61 2601 131 5 38 chrX 3978940 3979389 -158620541 - Tigger2a DNA MER2_type 0 434 1 219 226 9 17 chrX 3979389 3979450 -158620480 + (TA)n Simple_repeat Simple_repeat 53 114 0 282 179 0 0 chrX 3979886 3979942 -158619988 + (TG)n Simple_repeat Simple_repeat 2 57 0 21 89 0 0 chrX 3980131 3980187 -158619743 + AT_rich Low_complexity Low_complexity 1 56 0 370 256 24 18 chrX 3980280 3980444 -158619486 + (TA)n Simple_repeat Simple_repeat 1 165 0 341 273 16 44 chrX 3980383 3980566 -158619364 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 298 275 158 18 chrX 3981092 3981263 -158618667 - MIR SINE MIR -40 222 28 2198 105 7 0 chrX 3981636 3981931 -158617999 - AluSx SINE Alu -15 297 1 300 27 0 0 chrX 3982381 3982418 -158617512 + (CA)n Simple_repeat Simple_repeat 2 38 0 1508 170 11 11 chrX 3982448 3982754 -158617176 - AluSx SINE Alu 0 306 1 400 122 22 78 chrX 3982858 3983038 -158616892 + (TTATA)n Simple_repeat Simple_repeat 1 170 0 27 49 0 0 chrX 3983044 3983085 -158616845 + AT_rich Low_complexity Low_complexity 1 41 0 219 200 29 0 chrX 3983150 3983220 -158616710 + (TA)n Simple_repeat Simple_repeat 1 72 0 35 54 0 0 chrX 3983220 3983276 -158616654 + AT_rich Low_complexity Low_complexity 1 56 0 475 260 94 43 chrX 3983435 3983467 -158616463 - MLT1G LTR MaLR -2 588 559 1376 193 128 21 chrX 3983467 3983850 -158616080 - MSTB LTR MaLR 0 426 3 475 260 94 43 chrX 3983850 3984052 -158615878 - MLT1G LTR MaLR -31 559 342 262 245 170 68 chrX 3984045 3984192 -158615738 - MLT1G LTR MaLR -332 223 62 * 1636 175 3 29 chrX 3984193 3984501 -158615429 - AluJo SINE Alu -7 305 6 1675 177 3 23 chrX 3985063 3985368 -158614562 - AluJb SINE Alu -13 299 1 568 0 65 0 chrX 3986134 3986211 -158613719 + (TTTTA)n Simple_repeat Simple_repeat 2 83 0 1596 175 0 34 chrX 3986213 3986505 -158613425 - AluJo SINE Alu -30 282 1 209 222 0 0 chrX 3986544 3986589 -158613341 + MIR SINE MIR 218 262 0 22 0 0 0 chrX 3986740 3986762 -158613168 + AT_rich Low_complexity Low_complexity 1 22 0 2137 136 21 42 chrX 3987527 3987909 -158612021 - THE1C LTR MaLR -1 374 1 223 236 0 0 chrX 3988200 3988255 -158611675 + (TG)n Simple_repeat Simple_repeat 2 56 0 262 333 14 14 chrX 3989232 3989379 -158610551 - MIR3 SINE MIR -11 197 51 269 116 23 0 chrX 3989900 3989943 -158609987 + MLT1D LTR MaLR 6 49 -456 253 213 43 0 chrX 3989944 3989991 -158609939 + MLT1D LTR MaLR 1 49 -456 261 163 23 0 chrX 3989998 3990041 -158609889 + MLT1D LTR MaLR 7 50 -455 285 140 40 40 chrX 3990042 3990092 -158609838 + MLT1D LTR MaLR 1 50 -455 308 143 20 0 chrX 3990093 3990142 -158609788 + MLT1D LTR MaLR 1 50 -455 298 189 19 0 chrX 3990143 3990196 -158609734 + MLT1D LTR MaLR 1 54 -451 255 167 24 0 chrX 3990189 3990231 -158609699 + MLT1D LTR MaLR 8 50 -455 * 285 116 47 0 chrX 3990232 3990275 -158609655 + MLT1D LTR MaLR 1 45 -460 263 240 20 0 chrX 3990282 3990332 -158609598 + MLT1D LTR MaLR 1 51 -454 300 213 107 0 chrX 3990332 3990407 -158609523 + MLT1D LTR MaLR 1 83 -422 1691 222 96 14 chrX 3990509 3990853 -158609077 + MLT1D LTR MaLR 43 430 -75 3028 93 7 0 chrX 3990853 3991271 -158608659 - L1PA13 LINE L1 0 6163 5743 1691 222 96 14 chrX 3991271 3991354 -158608576 + MLT1D LTR MaLR 430 505 0 510 191 44 7 chrX 3991960 3992096 -158607834 + MER96B DNA MER1_type? 81 221 -196 24 0 0 0 chrX 3992194 3992218 -158607712 + AT_rich Low_complexity Low_complexity 1 24 0 1562 163 0 23 chrX 3992221 3992445 -158607485 - AluSx SINE Alu -53 259 40 5118 76 3 39 chrX 3992445 3993159 -158606771 + LTR12 LTR ERV1 1 688 0 1562 163 0 23 chrX 3993159 3993192 -158606738 - AluSx SINE Alu -272 40 8 * 2038 211 48 52 chrX 3993189 3993591 -158606339 - L1MB7 LINE L1 -61 6123 5724 1406 33 33 0 chrX 3993591 3993773 -158606157 - L1MA1 LINE L1 -4 6298 6111 2038 211 48 52 chrX 3993773 3994037 -158605893 - L1MB7 LINE L1 -460 5724 5460 233 167 0 0 chrX 3994083 3994131 -158605799 - L1M4c LINE L1 -3948 2698 2651 1542 232 64 127 chrX 3994199 3995282 -158604648 - L1M4c LINE L1 -5512 1030 16 1657 201 3 23 chrX 3996239 3996548 -158603382 + AluJb SINE Alu 1 303 -9 505 226 34 45 chrX 3997076 3997253 -158602677 + MER96B DNA MER1_type? 1 175 -242 2559 52 3 0 chrX 3997324 3997631 -158602299 - AluY SINE Alu -3 308 1 961 245 21 10 chrX 3997794 3998152 -158601778 + MLT1B LTR MaLR 1 343 -124 911 261 26 15 chrX 3998156 3998428 -158601502 + MLT1C LTR MaLR 193 467 0 1599 155 143 103 chrX 3999292 3999788 -158600142 - L1MB3 LINE L1 -7 6176 5661 572 158 18 26 chrX 3999788 3999884 -158600046 - AluJo/FRAM SINE Alu 0 312 216 1478 156 3 90 chrX 3999884 4000185 -158599745 - AluJb SINE Alu -37 275 1 572 158 18 26 chrX 4000185 4000202 -158599728 - AluJo/FRAM SINE Alu -96 216 200 253 173 19 0 chrX 4000202 4000254 -158599676 - L1MB3 LINE L1 -647 5658 5606 369 119 104 0 chrX 4000254 4000321 -158599609 - MADE1 DNA Mariner 0 80 7 791 261 20 5 chrX 4000652 4000855 -158599075 - MER58A DNA MER1_type 0 224 19 807 204 91 72 chrX 4001198 4001605 -158598325 - MLT2B1 LTR ERVL 0 520 1 1274 84 6 12 chrX 4001641 4001807 -158598123 - AluSp SINE Alu -16 297 133 545 228 35 17 chrX 4001914 4002078 -158597852 + MLT1A1 LTR MaLR 216 365 0 1349 186 48 35 chrX 4002218 4002354 -158597576 + MER77 LTR ERV1 274 407 -198 2257 94 0 17 chrX 4002354 4002653 -158597277 + AluY SINE Alu 1 294 -17 1349 186 48 35 chrX 4002653 4002827 -158597103 + MER77 LTR ERV1 407 588 -17 830 239 0 0 chrX 4003266 4003429 -158596501 - FRAM SINE Alu -16 160 1 2009 146 31 29 chrX 4004387 4004772 -158595158 - MLT1B LTR MaLR -4 386 1 2114 113 49 0 chrX 4004916 4005200 -158594730 + AluSx SINE Alu 1 298 -14 1714 167 31 7 chrX 4005344 4005631 -158594299 + AluJo SINE Alu 1 294 -18 691 142 15 8 chrX 4005631 4005765 -158594165 + GA-rich Low_complexity Low_complexity 1 135 0 574 254 86 10 chrX 4005987 4006184 -158593746 + MER20 DNA MER1_type 4 215 -4 23 0 0 0 chrX 4007286 4007309 -158592621 + AT_rich Low_complexity Low_complexity 1 23 0 2679 158 13 22 chrX 4007447 4007732 -158592198 - Tigger4(Zombi) DNA MER2_type -55 2676 2397 1875 164 27 6 chrX 4007732 4008062 -158591868 + MER1B DNA MER1_type 1 337 0 2679 158 13 22 chrX 4008062 4008314 -158591616 - Tigger4(Zombi) DNA MER2_type -334 2397 2144 1753 139 13 3 chrX 4008320 4008621 -158591309 - Tigger4(Zombi) DNA MER2_type -2159 572 269 1040 122 109 0 chrX 4008632 4008788 -158591142 - AluSg/x SINE Alu 0 312 140 2217 120 0 0 chrX 4008790 4009090 -158590840 - AluSx SINE Alu -12 300 1 1508 135 7 52 chrX 4009090 4009378 -158590552 - Tigger4(Zombi) DNA MER2_type -2455 276 2 672 124 80 7 chrX 4009776 4009913 -158590017 - L1M LINE L1 -889 5411 5265 308 261 0 0 chrX 4009932 4009997 -158589933 + MER2 DNA MER2_type 280 344 -1 1650 202 70 30 chrX 4011963 4012209 -158587721 - MER50 LTR ERV1 0 734 462 2418 114 28 17 chrX 4012209 4012569 -158587361 + THE1B LTR MaLR 1 364 0 1650 202 70 30 chrX 4012569 4012753 -158587177 - MER50 LTR ERV1 -272 462 287 2962 146 60 86 chrX 4012787 4013459 -158586471 + LTR8A LTR ERV1 1 654 -73 2055 136 0 23 chrX 4013459 4013768 -158586162 - AluSx SINE Alu -10 302 1 2962 146 60 86 chrX 4013768 4013841 -158586089 + LTR8A LTR ERV1 654 727 0 2014 131 3 0 chrX 4014175 4014492 -158585438 + AluSx SINE Alu 1 318 0 423 0 0 0 chrX 4015417 4015464 -158584466 + (CA)n Simple_repeat Simple_repeat 2 48 0 2351 57 3 0 chrX 4015710 4016038 -158583892 - AluY SINE Alu 0 329 1 22 35 0 0 chrX 4016192 4016221 -158583709 + AT_rich Low_complexity Low_complexity 1 29 0 197 33 33 0 chrX 4016313 4016343 -158583587 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1487 176 3 83 chrX 4016352 4016665 -158583265 - AluJb SINE Alu -24 288 1 23 33 0 0 chrX 4016702 4016732 -158583198 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chrX 4018822 4018864 -158581066 + AT_rich Low_complexity Low_complexity 1 42 0 273 119 0 0 chrX 4019562 4019604 -158580326 + (CA)n Simple_repeat Simple_repeat 2 43 0 563 175 24 0 chrX 4019789 4020008 -158579922 + CT-rich Low_complexity Low_complexity 1 224 0 364 186 32 8 chrX 4020043 4020167 -158579763 + CT-rich Low_complexity Low_complexity 2 128 0 2420 203 30 16 chrX 4020200 4020720 -158579210 - MLT2B3 LTR ERVL -35 512 1 2236 70 0 7 chrX 4020720 4021031 -158578899 + AluY SINE Alu 1 309 0 21 0 0 0 chrX 4021524 4021545 -158578385 + AT_rich Low_complexity Low_complexity 1 21 0 702 154 0 0 chrX 4022517 4022621 -158577309 - FRAM SINE Alu -36 140 37 1349 196 0 41 chrX 4022628 4022898 -158577032 - AluJo SINE Alu -24 288 30 294 375 71 6 chrX 4022960 4023128 -158576802 - MIR SINE MIR -37 225 47 1282 221 46 14 chrX 4023439 4023810 -158576120 + L1MC3 LINE L1 7026 7408 -377 1690 135 3 30 chrX 4023810 4024165 -158575765 - MER4A LTR ERV1 0 664 261 239 116 47 0 chrX 4024165 4024208 -158575722 - MER4A LTR ERV1 -566 98 54 249 263 13 0 chrX 4024235 4024311 -158575619 + L1MC3 LINE L1 7405 7481 -304 833 166 11 17 chrX 4025648 4025970 -158573960 + CT-rich Low_complexity Low_complexity 1 320 0 1014 176 0 6 chrX 4026213 4026372 -158573558 + AluJb SINE Alu 129 286 -26 456 213 110 55 chrX 4027482 4027646 -158572284 + MER58B DNA MER1_type 168 340 -1 318 106 0 0 chrX 4027906 4027953 -158571977 + (TA)n Simple_repeat Simple_repeat 1 47 0 392 329 117 49 chrX 4028033 4029030 -158570900 + L1 LINE L1 4128 5204 -942 1466 185 78 37 chrX 4029471 4029854 -158570076 - LTR2B LTR ERV1 -58 432 34 950 119 34 17 chrX 4029933 4030110 -158569820 + AluSq SINE Alu 5 184 -129 2376 52 17 3 chrX 4080385 4080675 -158519255 - AluY SINE Alu -17 294 1 32 43 0 0 chrX 4081276 4081322 -158518608 + AT_rich Low_complexity Low_complexity 1 46 0 2202 96 24 0 chrX 4081968 4082094 -158517836 + AluSx SINE Alu 1 123 -189 189 0 0 0 chrX 4082094 4082115 -158517815 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2202 96 24 0 chrX 4082115 4082281 -158517649 + AluSx SINE Alu 123 300 -12 22 0 0 0 chrX 4082574 4082596 -158517334 + AT_rich Low_complexity Low_complexity 1 22 0 347 236 157 0 chrX 4082726 4082866 -158517064 - Charlie2a DNA MER1_type -1782 1080 919 21 57 0 0 chrX 4082991 4083026 -158516904 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chrX 4083435 4083461 -158516469 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 22 0 0 0 chrX 4083522 4083544 -158516386 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chrX 4083708 4083759 -158516171 + AT_rich Low_complexity Low_complexity 1 51 0 28260 39 39 1 chrX 4084019 4087574 -158512356 + L1P LINE L1 3 3694 -2452 288 0 0 0 chrX 4087693 4087725 -158512205 + (TATG)n Simple_repeat Simple_repeat 1 32 0 873 105 35 0 chrX 4087725 4087896 -158512034 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 189 74 0 0 chrX 4087928 4087955 -158511975 + (TC)n Simple_repeat Simple_repeat 2 28 0 427 133 0 42 chrX 4087960 4088080 -158511850 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 421 293 33 13 chrX 4089443 4089593 -158510337 + MIR SINE MIR 107 259 -3 190 107 47 67 chrX 4089632 4089781 -158510149 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 33 25 0 0 chrX 4090352 4090392 -158509538 + AT_rich Low_complexity Low_complexity 1 40 0 213 121 0 0 chrX 4091057 4091090 -158508840 + (T)n Simple_repeat Simple_repeat 1 33 0 465 19 0 0 chrX 4091810 4091864 -158508066 + (TG)n Simple_repeat Simple_repeat 1 54 0 1617 161 3 39 chrX 4091915 4092121 -158507809 - AluJo SINE Alu -18 294 101 2421 107 27 3 chrX 4092121 4092487 -158507443 + THE1C LTR MaLR 1 375 0 1617 161 3 39 chrX 4092487 4092585 -158507345 - AluJo SINE Alu -211 101 1 1067 70 23 12 chrX 4093088 4093259 -158506671 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 720 89 16 8 chrX 4093373 4093497 -158506433 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 1998 182 9 24 chrX 4093981 4094111 -158505819 + MLT2B2 LTR ERVL 1 132 -383 2373 118 14 11 chrX 4094111 4094474 -158505456 + THE1B LTR MaLR 1 364 0 1998 182 9 24 chrX 4094474 4094783 -158505147 + MLT2B2 LTR ERVL 132 481 -34 427 221 16 0 chrX 4094807 4094934 -158504996 + (TCCA)n Simple_repeat Simple_repeat 1 129 0 2069 153 32 8 chrX 4095621 4095994 -158503936 + MLT1B LTR MaLR 1 382 -8 24 0 0 0 chrX 4097015 4097039 -158502891 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 4097851 4097879 -158502051 + AT_rich Low_complexity Low_complexity 1 28 0 1538 160 9 0 chrX 4097881 4098112 -158501818 - AluJo SINE Alu -75 237 5 986 182 0 23 chrX 4098626 4098802 -158501128 - AluJ SINE Alu 0 312 141 710 184 102 20 chrX 4098839 4098862 -158501068 - AluJ SINE Alu -153 159 139 189 0 0 0 chrX 4098862 4098883 -158501047 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 710 184 102 20 chrX 4098883 4099006 -158500924 - AluJ SINE Alu -173 139 1 5426 45 1 0 chrX 4099419 4100080 -158499850 + L1PA5 LINE L1 5486 6147 -7 2626 116 3 0 chrX 4101467 4101829 -158498101 + THE1B LTR MaLR 1 363 -1 1422 178 21 0 chrX 4101866 4102147 -158497783 + L1PB4 LINE L1 5868 6154 -2 25 65 0 0 chrX 4102154 4102200 -158497730 + AT_rich Low_complexity Low_complexity 1 46 0 2029 123 0 7 chrX 4102363 4102663 -158497267 + AluJb SINE Alu 1 298 -14 840 157 40 0 chrX 4102791 4103063 -158496867 - L1MA5A LINE L1 -5 6292 5961 2259 113 0 0 chrX 4103063 4103373 -158496557 - AluSq SINE Alu -3 310 1 840 157 40 0 chrX 4103373 4103423 -158496507 - L1MA5A LINE L1 -336 5961 5914 2622 174 8 23 chrX 4103451 4103967 -158495963 - L1PA16 LINE L1 -2 6164 5657 2403 164 54 5 chrX 4104184 4104611 -158495319 - MER83 LTR ERV1 0 448 1 1484 186 10 10 chrX 4105154 4105450 -158494480 - AluJb SINE Alu -10 302 7 26 0 0 0 chrX 4105836 4105862 -158494068 + AT_rich Low_complexity Low_complexity 1 26 0 1655 212 51 36 chrX 4106462 4106637 -158493293 - L1MD1 LINE L1 0 6242 6071 1965 140 140 8 chrX 4106637 4107015 -158492915 - MSTA LTR MaLR 0 428 1 1655 212 51 36 chrX 4107015 4107311 -158492619 - L1MD1 LINE L1 -171 6071 5764 1816 167 3 15 chrX 4107472 4107807 -158492123 - MER47A DNA MER2_type 0 366 36 22 0 0 0 chrX 4108041 4108063 -158491867 + AT_rich Low_complexity Low_complexity 1 22 0 1520 162 49 25 chrX 4108226 4108510 -158491420 - AluJo SINE Alu -21 291 1 252 282 71 26 chrX 4108511 4108665 -158491265 - MIR SINE MIR -62 146 10 180 147 0 59 chrX 4108659 4108693 -158491237 + MER5B DNA MER1_type 78 109 -69 * 331 283 232 0 chrX 4108776 4108914 -158491016 + MER5A DNA MER1_type 13 182 -7 2038 171 16 5 chrX 4109171 4109557 -158490373 + MLT1B LTR MaLR 1 390 0 186 43 0 0 chrX 4110375 4110398 -158489532 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1443 187 60 18 chrX 4110408 4110691 -158489239 - AluJb SINE Alu -17 295 1 1413 176 87 13 chrX 4110913 4111225 -158488705 - MER44D DNA MER2_type 0 609 5 1005 148 18 0 chrX 4114418 4114587 -158485343 + AluSg/x SINE Alu 111 282 -28 28 48 0 0 chrX 4114593 4114635 -158485295 + AT_rich Low_complexity Low_complexity 1 42 0 1024 228 94 22 chrX 4114851 4115171 -158484759 + MER2 DNA MER2_type 1 343 -1 1570 147 26 23 chrX 4115743 4116049 -158483881 - MLT1B LTR MaLR -83 307 1 378 0 0 0 chrX 4116114 4116156 -158483774 + (CA)n Simple_repeat Simple_repeat 2 43 0 1808 82 4 0 chrX 4116212 4116443 -158483487 - AluSp SINE Alu -17 296 65 1356 203 41 24 chrX 4117279 4117570 -158482360 - AluJo SINE Alu -5 297 2 22 35 0 0 chrX 4117840 4117869 -158482061 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 4117976 4117997 -158481933 + AT_rich Low_complexity Low_complexity 1 21 0 218 96 0 58 chrX 4118065 4118117 -158481813 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 572 292 17 43 chrX 4118446 4118679 -158481251 - MLT1E2 LTR MaLR -8 618 392 1255 129 224 11 chrX 4118699 4118962 -158480968 - MER47A DNA MER2_type -28 338 20 467 281 45 41 chrX 4118962 4119229 -158480701 - MLT1E2 LTR MaLR -239 387 120 2374 263 146 37 chrX 4119267 4120525 -158479405 + L1MD1 LINE L1 210 1605 -4935 1926 210 24 118 chrX 4120626 4120992 -158478938 + L1PA16 LINE L1 5499 5767 -399 414 100 0 0 chrX 4120992 4121052 -158478878 + (TA)n Simple_repeat Simple_repeat 1 60 0 1926 210 24 118 chrX 4121052 4121395 -158478535 + L1PA16 LINE L1 5767 6141 -25 1869 220 48 41 chrX 4121404 4121865 -158478065 + L1MD1 LINE L1 5374 5830 -806 1630 193 13 10 chrX 4121865 4122165 -158477765 + AluJo SINE Alu 2 302 -10 1869 220 48 41 chrX 4122165 4122560 -158477370 + L1MD1 LINE L1 5830 6220 -416 485 171 77 0 chrX 4122560 4122677 -158477253 + L1MD1 LINE L1 6500 6625 -11 1936 164 3 0 chrX 4122858 4123163 -158476767 - AluJb SINE Alu -6 306 1 229 289 70 26 chrX 4123431 4123545 -158476385 - MIR SINE MIR -32 230 112 731 130 41 0 chrX 4124876 4125045 -158474885 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 1961 178 113 10 chrX 4125084 4125501 -158474429 - MLT2B1 LTR ERVL -60 460 1 276 307 32 30 chrX 4125829 4125976 -158473954 - MIR SINE MIR -67 141 12 2173 106 3 10 chrX 4126738 4127031 -158472899 - AluSp SINE Alu -22 291 1 1781 284 62 110 chrX 4127056 4127668 -158472262 - L1MC3 LINE L1 0 7785 7246 301 246 0 0 chrX 4127668 4127737 -158472193 + L1MA2 LINE L1 6227 6295 -9 1781 284 62 110 chrX 4127737 4128213 -158471717 - L1MC3 LINE L1 -539 7246 6749 472 163 38 22 chrX 4128476 4128790 -158471140 + (TCTA)n Simple_repeat Simple_repeat 1 319 0 333 323 84 21 chrX 4129064 4129349 -158470581 - L1M4 LINE L1 -2461 3685 3383 23 0 0 0 chrX 4129378 4129401 -158470529 + AT_rich Low_complexity Low_complexity 1 23 0 197 132 26 0 chrX 4129468 4129506 -158470424 + CT-rich Low_complexity Low_complexity 2 40 0 303 28 0 0 chrX 4130292 4130328 -158469602 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 366 23 0 0 chrX 4130327 4130370 -158469560 + (TC)n Simple_repeat Simple_repeat 1 43 0 304 197 7 148 chrX 4130538 4130680 -158469250 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 1677 126 90 44 chrX 4130666 4130791 -158469139 + Tigger3(Golem) DNA MER2_type 2285 2403 -626 1707 195 3 3 chrX 4130791 4131118 -158468812 + AluJo SINE Alu 1 312 0 1677 126 90 44 chrX 4131118 4131381 -158468549 + Tigger3(Golem) DNA MER2_type 2403 2691 -338 360 188 0 0 chrX 4131605 4131685 -158468245 + L1MEc LINE L1 2177 2256 -4140 497 308 44 56 chrX 4131720 4132058 -158467872 + L1MEc LINE L1 2255 2588 -3627 640 212 9 0 chrX 4132072 4132301 -158467629 + GA-rich Low_complexity Low_complexity 1 231 0 587 219 20 9 chrX 4132333 4132685 -158467245 + GA-rich Low_complexity Low_complexity 1 356 0 2362 166 2 5 chrX 4133628 4134039 -158465891 + MER66B LTR ERV1 1 410 -76 431 298 31 31 chrX 4134621 4134782 -158465148 - MER5A DNA MER1_type -27 162 2 1873 147 3 13 chrX 4134896 4135209 -158464721 + AluSx SINE Alu 1 310 -2 3018 190 11 54 chrX 4135331 4135551 -158464379 + LTR51 LTR ERV1 1 229 -442 2125 116 0 3 chrX 4135551 4135869 -158464061 - AluSx SINE Alu 0 317 1 3018 190 11 54 chrX 4135869 4136347 -158463583 + LTR51 LTR ERV1 229 670 -1 2516 56 0 3 chrX 4136548 4136852 -158463078 + AluY SINE Alu 3 305 -6 2401 195 27 63 chrX 4136934 4137569 -158462361 - LTR9 LTR ERV1 0 612 1 1937 232 24 13 chrX 4137744 4138206 -158461724 + LTR24 LTR ERV1 1 467 0 1884 149 3 29 chrX 4138225 4138534 -158461396 - AluJo SINE Alu -11 301 1 2054 125 76 15 chrX 4138827 4139170 -158460760 + THE1B LTR MaLR 1 364 0 230 136 45 45 chrX 4139648 4139714 -158460216 + L1MA9 LINE L1 6239 6304 -8 1619 110 195 23 chrX 4140832 4141140 -158458790 - MER4A LTR ERV1 -43 621 261 485 155 21 10 chrX 4141140 4141237 -158458693 - MER4A LTR ERV1 -566 98 1 233 308 33 11 chrX 4142186 4142277 -158457653 + MIR SINE MIR 35 127 -135 1905 129 42 58 chrX 4142630 4143011 -158456919 - THE1C LTR MaLR 0 375 1 781 219 26 53 chrX 4143178 4143780 -158456150 + MER4C LTR ERV1 1 693 -6 208 299 103 10 chrX 4145201 4145298 -158454632 - MER5A DNA MER1_type -77 112 7 440 304 131 6 chrX 4145312 4145480 -158454450 - MER5A DNA MER1_type 0 189 1 199 316 127 0 chrX 4145496 4145575 -158454355 - MER5B DNA MER1_type 0 178 90 2267 186 20 40 chrX 4145578 4146133 -158453797 - L1PA16 LINE L1 -2 6164 5621 3672 205 27 64 chrX 4146248 4147292 -158452638 - L1PA16 LINE L1 -784 5362 4358 195 333 0 0 chrX 4147308 4147371 -158452559 + MER5B DNA MER1_type 115 177 -1 493 219 5 10 chrX 4147944 4148146 -158451784 + CT-rich Low_complexity Low_complexity 1 200 0 824 185 0 6 chrX 4148159 4148332 -158451598 + CT-rich Low_complexity Low_complexity 3 174 0 221 284 86 12 chrX 4148336 4148417 -158451513 + MIR SINE MIR 108 194 -68 543 185 21 35 chrX 4149782 4150109 -158449821 + CT-rich Low_complexity Low_complexity 1 322 0 251 219 21 31 chrX 4150251 4150347 -158449583 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 286 141 13 26 chrX 4150603 4150646 -158449284 + (TAGA)n Simple_repeat Simple_repeat 1 44 -33 2217 72 27 14 chrX 4150646 4150938 -158448992 + AluSx SINE Alu 11 306 -6 286 141 13 26 chrX 4150938 4150972 -158448958 + (TAGA)n Simple_repeat Simple_repeat 44 77 0 8727 27 2 1 chrX 4151476 4153292 -158446638 - L1PA2 LINE L1 -5 6150 4335 639 160 25 15 chrX 4153424 4153590 -158446340 + CT-rich Low_complexity Low_complexity 1 196 -32 201 39 0 0 chrX 4153590 4153616 -158446314 + (TTG)n Simple_repeat Simple_repeat 2 27 0 639 160 25 15 chrX 4153616 4153650 -158446280 + CT-rich Low_complexity Low_complexity 196 228 0 349 123 0 18 chrX 4154959 4155012 -158444918 - AluJo SINE Alu -12 290 239 1459 219 156 72 chrX 4155012 4155212 -158444718 + LTR1 LTR ERV1 1 183 -602 246 62 0 0 chrX 4155212 4155244 -158444686 + (CA)n Simple_repeat Simple_repeat 1 32 0 1459 219 156 72 chrX 4155244 4155766 -158444164 + LTR1 LTR ERV1 183 784 -1 1388 163 0 48 chrX 4155766 4156017 -158443913 - AluJo SINE Alu -70 242 4 531 227 25 81 chrX 4156162 4156361 -158443569 + MER106B DNA MER1_type 1 210 -849 1504 184 12 70 chrX 4156361 4156692 -158443238 + AluJb SINE Alu 1 312 0 531 227 25 81 chrX 4156692 4156721 -158443209 + MER106B DNA MER1_type 210 1043 -16 195 204 0 0 chrX 4157043 4157092 -158442838 + (TA)n Simple_repeat Simple_repeat 1 49 0 2750 164 15 33 chrX 4157227 4157768 -158442162 + LTR26B LTR ERV1 1 531 0 257 320 20 0 chrX 4158745 4158845 -158441085 + MLT1J LTR MaLR 80 181 -330 1828 208 65 114 chrX 4159265 4159638 -158440292 + LTR8A LTR ERV1 1 320 -407 2431 118 5 18 chrX 4159638 4160018 -158439912 + THE1C LTR MaLR 1 375 0 1828 208 65 114 chrX 4160018 4160407 -158439523 + LTR8A LTR ERV1 320 726 -1 324 270 10 0 chrX 4160546 4160646 -158439284 + MLT1I LTR MaLR 309 409 0 432 277 32 26 chrX 4160795 4160950 -158438980 - LTR16A1 LTR ERVL -4 453 298 315 0 0 0 chrX 4162271 4162306 -158437624 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 4162536 4162567 -158437363 + AT_rich Low_complexity Low_complexity 1 31 0 286 247 37 0 chrX 4163122 4163203 -158436727 + (TA)n Simple_repeat Simple_repeat 2 85 0 31 44 0 0 chrX 4163215 4163260 -158436670 + AT_rich Low_complexity Low_complexity 1 45 0 281 161 0 0 chrX 4163263 4163319 -158436611 - L1PB4 LINE L1 -1 6155 6100 186 236 0 0 chrX 4163324 4163379 -158436551 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 34 55 0 0 chrX 4163548 4163603 -158436327 + AT_rich Low_complexity Low_complexity 1 55 0 494 237 119 0 chrX 4163607 4163725 -158436205 - FLAM_A SINE Alu -1 132 1 920 164 0 7 chrX 4164455 4164607 -158435323 + FRAM SINE Alu 2 152 -14 899 293 86 112 chrX 4164763 4165430 -158434500 + L2 LINE L2 1839 2522 -791 3150 146 10 2 chrX 4165430 4165922 -158434008 + LOR1a LTR ERV1 1 496 -1 899 293 86 112 chrX 4165922 4166071 -158433859 + L2 LINE L2 2522 2673 -640 1982 129 0 14 chrX 4166071 4166401 -158433529 - AluSx SINE Alu 0 326 1 899 293 86 112 chrX 4166401 4167117 -158432813 + L2 LINE L2 2673 3307 -6 2376 82 0 19 chrX 4167721 4168036 -158431894 + AluY SINE Alu 3 311 0 213 65 0 0 chrX 4168089 4168120 -158431810 + (A)n Simple_repeat Simple_repeat 1 31 0 353 284 34 28 chrX 4168122 4168298 -158431632 + L1MC/D LINE L1 5272 5448 -2360 257 291 25 23 chrX 4168534 4168696 -158431234 + L1MC/D LINE L1 5665 5825 -312 180 0 0 0 chrX 4168723 4168743 -158431187 + (TA)n Simple_repeat Simple_repeat 2 21 0 493 311 58 5 chrX 4168743 4168933 -158430997 - MIR SINE MIR -35 227 28 207 0 0 0 chrX 4168971 4168994 -158430936 + (CATATA)n Simple_repeat Simple_repeat 5 27 0 793 159 0 15 chrX 4169009 4169141 -158430789 + FLAM_C SINE Alu 2 131 -2 268 230 10 10 chrX 4169186 4169286 -158430644 + (TA)n Simple_repeat Simple_repeat 1 100 0 447 98 0 130 chrX 4169289 4169381 -158430549 + MADE1 DNA Mariner 1 80 0 30 69 0 0 chrX 4169672 4169730 -158430200 + AT_rich Low_complexity Low_complexity 1 58 0 2285 76 6 31 chrX 4169889 4170206 -158429724 + AluY SINE Alu 1 309 -2 26 0 0 0 chrX 4170206 4170232 -158429698 + AT_rich Low_complexity Low_complexity 1 26 0 244 286 128 23 chrX 4171264 4171397 -158428533 - MIR SINE MIR -42 220 74 1566 151 16 87 chrX 4172601 4172913 -158427017 - AluJo SINE Alu -21 291 2 1055 286 68 52 chrX 4173770 4174578 -158425352 - L1ME3A LINE L1 -94 6076 5255 281 304 99 10 chrX 4174638 4174708 -158425222 - L1ME3A LINE L1 -925 5221 5159 2200 127 30 28 chrX 4174708 4175071 -158424859 + THE1B LTR MaLR 1 364 0 281 304 99 10 chrX 4175071 4175201 -158424729 - L1ME3A LINE L1 -987 5159 5003 244 293 166 13 chrX 4175518 4175675 -158424255 - L1ME3A LINE L1 -2272 3874 3694 * 271 272 128 11 chrX 4175668 4175848 -158424082 - L1M4 LINE L1 -1538 4608 4408 353 270 0 0 chrX 4176191 4176265 -158423665 - MER5A DNA MER1_type -99 90 17 1658 197 0 7 chrX 4176748 4177043 -158422887 + AluJo SINE Alu 3 295 -17 1616 193 0 41 chrX 4177106 4177422 -158422508 - AluJb SINE Alu -8 304 2 883 154 83 12 chrX 4180072 4180241 -158419689 + MER20 DNA MER1_type 34 214 -5 21 36 0 0 chrX 4180750 4180778 -158419152 + AT_rich Low_complexity Low_complexity 1 28 0 2441 153 28 19 chrX 4180779 4181209 -158418721 + Tigger2a DNA MER2_type 1 434 0 1945 155 0 0 chrX 4181235 4181542 -158418388 + AluSx SINE Alu 1 307 0 1448 121 56 0 chrX 4181777 4182026 -158417904 - L1MA4 LINE L1 0 6300 6038 380 341 59 36 chrX 4182869 4183227 -158416703 + L1M4 LINE L1 2480 2845 -3301 1802 149 36 0 chrX 4183255 4183557 -158416373 + AluSq SINE Alu 1 313 0 383 123 0 27 chrX 4183563 4183636 -158416294 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 250 171 24 49 chrX 4183756 4183838 -158416092 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2650 182 34 61 chrX 4183998 4184985 -158414945 + L1MA10 LINE L1 4626 5607 -561 662 147 0 18 chrX 4184985 4185094 -158414836 + FLAM_C SINE Alu 14 120 -23 330 87 0 0 chrX 4185095 4185141 -158414789 + (TA)n Simple_repeat Simple_repeat 1 46 0 3314 178 36 23 chrX 4185145 4185876 -158414054 + L1MA10 LINE L1 5594 6333 -1 410 158 40 0 chrX 4186464 4186540 -158413390 + MADE1 DNA Mariner 2 80 0 24 0 0 0 chrX 4186978 4187002 -158412928 + AT_rich Low_complexity Low_complexity 1 24 0 1341 185 14 42 chrX 4187370 4187538 -158412392 + AluJb SINE Alu 1 159 -153 2048 139 232 34 chrX 4187538 4187978 -158411952 - MER1A DNA MER1_type 0 527 1 1341 185 14 42 chrX 4187978 4188096 -158411834 + AluJb SINE Alu 159 279 -33 213 65 0 0 chrX 4188096 4188127 -158411803 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 266 159 48 28 chrX 4188500 4188645 -158411285 + (TCTA)n Simple_repeat Simple_repeat 2 149 0 23 0 0 0 chrX 4188803 4188826 -158411104 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chrX 4189448 4189480 -158410450 + AT_rich Low_complexity Low_complexity 1 32 0 31 44 0 0 chrX 4189514 4189559 -158410371 + AT_rich Low_complexity Low_complexity 1 45 0 2408 274 102 35 chrX 4190347 4192304 -158407626 + L1MEc LINE L1 638 2686 -3529 561 192 20 20 chrX 4192362 4192508 -158407422 - L1MA10 LINE L1 -7 6327 6182 207 114 0 0 chrX 4192947 4192982 -158406948 + (CA)n Simple_repeat Simple_repeat 2 36 0 1062 171 0 6 chrX 4194350 4194531 -158405399 - AluJb SINE Alu -16 296 117 1641 143 68 8 chrX 4194531 4194797 -158405133 - AluJo SINE Alu -30 282 1 2687 162 83 2 chrX 4195046 4195552 -158404378 + MER44D DNA MER2_type 2 603 -2 4104 100 14 88 chrX 4195575 4196292 -158403638 + MER4A LTR ERV1 1 664 0 932 191 0 0 chrX 4197045 4197207 -158402723 - AluJb SINE Alu -4 308 147 182 105 26 0 chrX 4197469 4197507 -158402423 + T-rich Low_complexity Low_complexity 3 41 0 405 127 14 0 chrX 4197586 4197657 -158402273 - AluS SINE Alu -237 72 1 1890 161 6 19 chrX 4199919 4200235 -158399695 + AluJo SINE Alu 1 312 0 1867 170 120 0 chrX 4201169 4201551 -158398379 - MSTA LTR MaLR 0 428 1 10749 132 16 14 chrX 4201589 4202325 -158397605 - L1PA13 LINE L1 -281 5882 5148 2486 125 5 8 chrX 4202325 4202701 -158397229 + THE1C LTR MaLR 1 375 0 10749 132 16 14 chrX 4202701 4203575 -158396355 - L1PA13 LINE L1 -1015 5148 4269 978 93 0 7 chrX 4203575 4203715 -158396215 - MER85 DNA T2_type 0 139 1 10749 132 16 14 chrX 4203715 4204512 -158395418 - L1PA13 LINE L1 -1894 4269 3475 202 386 26 26 chrX 4204733 4204961 -158394969 - L2 LINE L2 -1357 1957 1730 198 0 0 0 chrX 4205061 4205083 -158394847 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1663 184 36 16 chrX 4206239 4206544 -158393386 + AluSx SINE Alu 2 312 0 2555 242 26 29 chrX 4206942 4207296 -158392634 - MER76 LTR ERV -29 659 306 1793 145 60 33 chrX 4207296 4207661 -158392269 - THE1C LTR MaLR 0 375 1 2555 242 26 29 chrX 4207661 4207967 -158391963 - MER76 LTR ERV -382 306 1 1434 204 3 22 chrX 4208004 4208317 -158391613 + AluJo SINE Alu 1 307 -5 4915 143 35 21 chrX 4208900 4209890 -158390040 + L1PA15 LINE L1 5163 6164 -1 298 201 15 67 chrX 4210294 4210428 -158389502 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 1804 132 3 10 chrX 4210428 4210723 -158389207 + L1PA16 LINE L1 5715 6007 -159 225 224 52 0 chrX 4210722 4210780 -158389150 + L1MD3 LINE L1 6615 6675 -1320 * 1628 143 4 0 chrX 4211637 4211875 -158388055 + AluSx SINE Alu 1 239 -73 189 0 0 0 chrX 4211885 4211906 -158388024 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 530 100 40 0 chrX 4214298 4214398 -158385532 + GA-rich Low_complexity Low_complexity 1 104 0 189 328 28 79 chrX 4214398 4214575 -158385355 - L3 LINE CR1 -25 1552 1385 22 0 0 0 chrX 4214639 4214661 -158385269 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chrX 4214887 4214937 -158384993 + AT_rich Low_complexity Low_complexity 1 50 0 186 351 70 54 chrX 4215126 4215385 -158384545 - L3 LINE CR1 -828 749 487 252 0 0 0 chrX 4215665 4215693 -158384237 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chrX 4216611 4216632 -158383298 + AT_rich Low_complexity Low_complexity 1 21 0 296 316 129 19 chrX 4217616 4217825 -158382105 + L2 LINE L2 1238 1469 -1845 1431 244 37 55 chrX 4217825 4218333 -158381597 - MLT1D LTR MaLR 0 505 7 22 35 0 0 chrX 4219576 4219605 -158380325 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 57 0 chrX 4220376 4220429 -158379501 + MIR SINE MIR 117 172 -90 1688 199 0 0 chrX 4220877 4221164 -158378766 + AluJo SINE Alu 2 288 -24 848 254 55 47 chrX 4221579 4221785 -158378145 - MLT1E LTR MaLR -2 591 381 2775 178 154 13 chrX 4221785 4222420 -158377510 - LTR8A LTR ERV1 -2 725 1 848 254 55 47 chrX 4222420 4222469 -158377461 - MLT1E LTR MaLR -212 381 334 379 329 22 0 chrX 4222530 4222667 -158377263 - MLT1E LTR MaLR -381 212 73 3030 262 103 55 chrX 4222683 4224438 -158375492 + L1MEc LINE L1 2179 4010 -2205 2284 108 0 6 chrX 4224438 4224752 -158375178 + AluSq SINE Alu 1 312 -1 3030 262 103 55 chrX 4224752 4225072 -158374858 + L1MEc LINE L1 4010 4313 -1902 2147 164 47 29 chrX 4225073 4225612 -158374318 + MLT2A2 LTR ERVL 1 554 0 1279 256 116 58 chrX 4225613 4226595 -158373335 + L1MEc LINE L1 4356 5394 -821 * 6053 126 11 14 chrX 4226587 4227518 -158372412 + THE1C-int LTR MaLR 653 1580 0 1823 169 38 22 chrX 4227518 4227884 -158372046 + THE1C LTR MaLR 1 372 -3 255 61 0 0 chrX 4227884 4227917 -158372013 + (CA)n Simple_repeat Simple_repeat 2 34 0 222 267 78 22 chrX 4227917 4228007 -158371923 - MIR SINE MIR -58 204 110 1495 90 4 37 chrX 4228031 4228275 -158371655 - L1MA8 LINE L1 -4 6287 6052 2536 107 3 8 chrX 4228335 4228701 -158371229 - THE1B LTR MaLR 0 364 1 780 184 0 25 chrX 4229532 4229818 -158370112 + GA-rich Low_complexity Low_complexity 1 278 0 629 204 6 17 chrX 4229829 4230010 -158369920 + GA-rich Low_complexity Low_complexity 2 180 0 534 126 32 11 chrX 4230797 4230892 -158369038 + MER4A LTR ERV1 2 98 -566 1628 131 14 78 chrX 4230892 4231259 -158368671 + MER4A LTR ERV1 261 662 -2 2455 62 0 0 chrX 4231532 4231849 -158368081 + AluY SINE Alu 1 317 0 2267 103 3 0 chrX 4232921 4233221 -158366709 - AluSx SINE Alu -11 301 1 3877 158 12 12 chrX 4235556 4236261 -158363669 - MER51C LTR ERV1 -17 623 1 200 225 0 0 chrX 4236572 4236612 -158363318 + MIR SINE MIR 2 41 -221 807 113 0 24 chrX 4236832 4236956 -158362974 + MER4A LTR ERV1 544 664 0 216 217 57 19 chrX 4237212 4237318 -158362612 + (TA)n Simple_repeat Simple_repeat 1 110 0 530 313 106 26 chrX 4237318 4237705 -158362225 - L1MC4a LINE L1 -1880 5928 5511 1703 176 3 23 chrX 4237800 4238102 -158361828 + AluJb SINE Alu 1 296 -16 284 165 39 0 chrX 4238138 4238191 -158361739 + (TA)n Simple_repeat Simple_repeat 1 50 -57 1924 130 55 22 chrX 4238191 4238552 -158361378 + THE1C LTR MaLR 1 373 -2 284 165 39 0 chrX 4238552 4238601 -158361329 + (TA)n Simple_repeat Simple_repeat 50 107 0 1089 211 32 7 chrX 4238929 4239214 -158360716 - MER33 DNA MER1_type -1 323 32 21 0 0 0 chrX 4239821 4239842 -158360088 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chrX 4240782 4240825 -158359105 + AT_rich Low_complexity Low_complexity 1 43 0 194 62 31 0 chrX 4241600 4241632 -158358298 + (TC)n Simple_repeat Simple_repeat 2 34 0 296 245 50 58 chrX 4242282 4242383 -158357547 - MIR SINE MIR -4 258 157 1612 147 125 9 chrX 4242383 4242710 -158357220 + MLT1A1 LTR MaLR 1 365 0 296 245 50 58 chrX 4242710 4242747 -158357183 - MIR SINE MIR -105 157 121 713 184 101 0 chrX 4242961 4243119 -158356811 - L1MA5A LINE L1 -1 6296 6123 887 189 5 16 chrX 4243220 4243410 -158356520 + AluJo SINE Alu 119 306 -6 975 231 72 20 chrX 4243458 4243887 -158356043 + MLT1D LTR MaLR 3 467 0 2258 114 0 0 chrX 4244052 4244359 -158355571 - AluSx SINE Alu -5 307 1 770 269 159 48 chrX 4244533 4244730 -158355200 - L1MD2 LINE L1 -12 6347 6173 201 39 0 0 chrX 4244730 4244756 -158355174 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chrX 4244757 4244777 -158355153 + (GA)n Simple_repeat Simple_repeat 2 21 0 770 269 159 48 chrX 4244777 4244949 -158354981 - L1MD2 LINE L1 -185 6174 5935 * 939 109 7 7 chrX 4244941 4245088 -158354842 + L1MA5A LINE L1 5828 5974 -323 1475 194 14 7 chrX 4245317 4245596 -158354334 + AluJo SINE Alu 1 281 -31 2806 16 0 0 chrX 4246003 4246314 -158353616 + AluYa5 SINE Alu 1 311 0 23 0 0 0 chrX 4246314 4246337 -158353593 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chrX 4246433 4246460 -158353470 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 307 206 31 chrX 4246622 4247068 -158352862 + L2 LINE L2 2446 2969 -345 201 171 24 0 chrX 4247719 4247760 -158352170 + C-rich Low_complexity Low_complexity 2 43 0 359 323 48 42 chrX 4247788 4247977 -158351953 + L2 LINE L2 3123 3312 -1 2006 205 93 58 chrX 4248022 4248759 -158351171 - LTR1B LTR ERV1 0 785 29 2211 158 8 74 chrX 4248870 4249369 -158350561 - LOR1a LTR ERV1 0 497 32 1454 103 0 0 chrX 4250007 4250192 -158349738 + AluSx SINE Alu 1 185 -127 1456 170 7 0 chrX 4250192 4250469 -158349461 + L1MA4 LINE L1 5320 5598 -702 1189 150 0 12 chrX 4250473 4250646 -158349284 + FRAM SINE Alu 1 164 -12 2210 144 17 10 chrX 4250646 4251048 -158348882 + L1MA4 LINE L1 5606 6010 -290 1001 129 13 7 chrX 4251152 4251307 -158348623 - AluJo SINE Alu -76 236 81 2670 125 7 7 chrX 4251307 4251716 -158348214 + LTR9B LTR ERV1 236 644 0 2240 154 64 15 chrX 4251971 4252437 -158347493 + L1MB3 LINE L1 5659 6147 -36 2099 150 49 29 chrX 4252438 4252964 -158346966 - MLT2A2 LTR ERVL 0 554 1 4199 143 33 1 chrX 4253383 4254084 -158345846 - LTR39 LTR ERV1 -60 723 1 250 294 110 46 chrX 4254801 4254910 -158345020 - MER5A DNA MER1_type -53 136 21 821 181 6 0 chrX 4255123 4255300 -158344630 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 297 130 0 0 chrX 4255300 4255346 -158344584 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1016 128 6 0 chrX 4255346 4255426 -158344504 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 1016 128 6 0 chrX 4255426 4255605 -158344325 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 228 231 0 0 chrX 4255703 4255755 -158344175 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 538 141 207 71 chrX 4256457 4256706 -158343224 - MER4C LTR ERV1 -20 445 169 1042 124 54 158 chrX 4256711 4257097 -158342833 - MER4A LTR ERV1 -318 346 1 2660 172 103 48 chrX 4258148 4258835 -158341095 - LTR8A LTR ERV1 0 727 3 345 364 0 0 chrX 4258866 4258995 -158340935 - MIR SINE MIR -6 256 128 540 317 6 0 chrX 4259022 4259186 -158340744 + MLT2F LTR ERVL 432 596 -67 21 36 0 0 chrX 4259431 4259459 -158340471 + AT_rich Low_complexity Low_complexity 1 28 0 3931 123 8 9 chrX 4259591 4259772 -158340158 - MER41B LTR ERV1 0 635 455 1756 157 29 32 chrX 4259772 4260116 -158339814 + MER61A LTR ERV1 1 343 0 3931 123 8 9 chrX 4260116 4260570 -158339360 - MER41B LTR ERV1 -180 455 1 2016 122 0 33 chrX 4261195 4261498 -158338432 + AluSx SINE Alu 14 306 -6 2455 68 0 13 chrX 4262971 4263282 -158336648 + AluY SINE Alu 1 307 -4 186 103 0 0 chrX 4263337 4263366 -158336564 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 187 6 3 chrX 4263373 4263737 -158336193 + MLT1A1 LTR MaLR 1 365 0 233 300 157 33 chrX 4263979 4264189 -158335741 - L2 LINE L2 -597 2717 2482 317 205 0 13 chrX 4264258 4264336 -158335594 - LTR52 LTR ERVL -340 81 5 2439 231 20 38 chrX 4264728 4265038 -158334892 + MER82 DNA MER2_type 1 315 -338 2380 165 68 4 chrX 4265038 4265505 -158334425 + LOR1a LTR ERV1 1 497 0 2439 231 20 38 chrX 4265505 4265857 -158334073 + MER82 DNA MER2_type 315 651 -2 3968 156 13 11 chrX 4266814 4267524 -158332406 - MER50 LTR ERV1 -23 711 1 2676 175 42 43 chrX 4267816 4268166 -158331764 + MER4D LTR ERV1 1 351 -552 258 32 0 0 chrX 4268166 4268197 -158331733 + (TG)n Simple_repeat Simple_repeat 1 31 0 2676 175 42 43 chrX 4268197 4268512 -158331418 + MER4D LTR ERV1 351 665 -238 1902 70 4 15 chrX 4268512 4268785 -158331145 + MER41A LTR ERV1 1 270 -284 254 190 35 0 chrX 4268785 4268843 -158331087 + LTR1B LTR ERV1 767 826 0 * 3532 169 1 29 chrX 4268843 4269121 -158330809 + LTR39 LTR ERV1 152 436 -347 1817 144 0 27 chrX 4269121 4269464 -158330466 - AluSx SINE Alu 0 335 1 3532 169 1 29 chrX 4269464 4269834 -158330096 + LTR39 LTR ERV1 436 783 0 575 255 185 8 chrX 4271588 4271847 -158328083 - MLT1F LTR MaLR 0 542 238 35 126 0 0 chrX 4271910 4272204 -158327726 + AT_rich Low_complexity Low_complexity 1 294 0 219 242 19 32 chrX 4272379 4272536 -158327394 + (TTAAA)n Simple_repeat Simple_repeat 5 159 0 43 115 0 0 chrX 4272542 4272760 -158327170 + AT_rich Low_complexity Low_complexity 1 218 0 302 266 16 38 chrX 4272831 4273015 -158326915 + (TA)n Simple_repeat Simple_repeat 1 180 0 544 186 90 42 chrX 4273015 4273096 -158326834 - L1MB4 LINE L1 -28 6152 6076 2227 161 29 0 chrX 4273096 4273475 -158326455 + MLT1B LTR MaLR 1 390 0 544 186 90 42 chrX 4273475 4273560 -158326370 - L1MB4 LINE L1 -104 6076 5978 1909 104 156 9 chrX 4273790 4274116 -158325814 - THE1C LTR MaLR -1 374 1 376 182 0 107 chrX 4274436 4274491 -158325439 - L1MB4 LINE L1 -202 5978 5941 1738 175 3 17 chrX 4274491 4274782 -158325148 - AluJo SINE Alu -25 287 1 376 182 0 107 chrX 4274782 4274847 -158325083 - L1MB4 LINE L1 -239 5941 5871 424 331 0 18 chrX 4274852 4275018 -158324912 - MLT1F LTR MaLR -378 164 2 198 150 0 0 chrX 4275057 4275097 -158324833 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 2059 122 64 103 chrX 4275184 4275650 -158324280 - LTR47A LTR ERVL 0 452 5 288 312 185 0 chrX 4276338 4276527 -158323403 + L2 LINE L2 2259 2482 -832 545 129 11 0 chrX 4276722 4276815 -158323115 + G-rich Low_complexity Low_complexity 5 98 0 1568 193 3 20 chrX 4276982 4277288 -158322642 + AluJo SINE Alu 1 301 -11 46 45 0 0 chrX 4278359 4278426 -158321504 + AT_rich Low_complexity Low_complexity 1 67 0 1162 123 10 5 chrX 4278571 4278766 -158321164 + L1MA4A LINE L1 6102 6297 -6 497 238 31 21 chrX 4279035 4279228 -158320702 - L1MD3 LINE L1 0 7995 7801 186 350 15 58 chrX 4279336 4279473 -158320457 - MIR SINE MIR -131 131 1 1101 63 0 0 chrX 4280468 4280650 -158319280 + L1PA10 LINE L1 6006 6187 0 342 77 39 0 chrX 4280729 4280781 -158319149 + MLT2A2 LTR ERVL 400 453 0 21 0 0 0 chrX 4281260 4281281 -158318649 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 4281396 4281437 -158318493 + (TA)n Simple_repeat Simple_repeat 2 42 0 1679 174 7 26 chrX 4282125 4282435 -158317495 + AluJo SINE Alu 2 305 -7 234 0 0 0 chrX 4282658 4282684 -158317246 + (TTG)n Simple_repeat Simple_repeat 2 27 0 208 231 0 0 chrX 4283656 4283695 -158316235 + polypurine Low_complexity Low_complexity 2 40 0 483 194 14 14 chrX 4283700 4283839 -158316091 + GA-rich Low_complexity Low_complexity 3 141 0 553 141 0 63 chrX 4283852 4284043 -158315887 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 211 253 30 0 chrX 4284065 4284164 -158315766 + GA-rich Low_complexity Low_complexity 4 105 0 * 314 115 16 0 chrX 4284154 4284215 -158315715 + (GGAGA)n Simple_repeat Simple_repeat 4 65 0 441 0 0 0 chrX 4284531 4284580 -158315350 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 328 309 0 0 chrX 4284616 4284710 -158315220 - MIR SINE MIR -8 254 161 208 191 61 41 chrX 4284710 4284857 -158315073 + (TTATG)n Simple_repeat Simple_repeat 5 154 0 1572 195 76 24 chrX 4284880 4285249 -158314681 + MLT1B LTR MaLR 3 390 0 343 333 5 22 chrX 4285294 4285419 -158314511 - MIR SINE MIR -66 142 21 2060 132 19 29 chrX 4285864 4286243 -158313687 + THE1C LTR MaLR 1 375 0 2922 187 10 84 chrX 4286664 4287056 -158312874 - L1MA7 LINE L1 -9 6282 5979 1954 160 0 3 chrX 4287056 4287368 -158312562 - AluJo SINE Alu -1 311 1 2922 187 10 84 chrX 4287368 4287781 -158312149 - L1MA7 LINE L1 -312 5979 5537 213 108 0 0 chrX 4287784 4287821 -158312109 + (CCA)n Simple_repeat Simple_repeat 1 37 0 758 164 0 0 chrX 4288637 4288759 -158311171 + AluJb SINE Alu 4 125 -187 717 163 12 6 chrX 4289392 4289552 -158310378 + GA-rich Low_complexity Low_complexity 4 164 0 226 277 15 0 chrX 4289579 4289644 -158310286 + (TA)n Simple_repeat Simple_repeat 1 66 0 454 111 14 0 chrX 4289776 4289848 -158310082 - MADE1 DNA Mariner -5 75 3 232 120 40 0 chrX 4289880 4289930 -158310000 + (TA)n Simple_repeat Simple_repeat 2 53 0 577 208 100 0 chrX 4291037 4291157 -158308773 - FLAM_A SINE Alu 0 133 2 2051 123 0 3 chrX 4291995 4292308 -158307622 + AluSx SINE Alu 1 312 0 3778 104 15 74 chrX 4292308 4292877 -158307053 + L1PA13 LINE L1 5524 6048 -115 2563 40 0 0 chrX 4292877 4293173 -158306757 + AluY SINE Alu 1 296 -15 3778 104 15 74 chrX 4293173 4293278 -158306652 + L1PA13 LINE L1 6048 6158 -5 231 245 55 32 chrX 4293534 4293680 -158306250 + MLT1J2 LTR MaLR 64 251 -260 313 253 11 22 chrX 4294962 4295053 -158304877 - L1MC4 LINE L1 -1339 6703 6614 415 191 0 35 chrX 4295115 4295230 -158304700 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 180 176 0 0 chrX 4295258 4295292 -158304638 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 231 265 102 48 chrX 4295874 4296040 -158303890 + HAL1 LINE L1 5 179 -2328 376 205 33 33 chrX 4296281 4296403 -158303527 - L1MA4A LINE L1 -181 6122 6001 360 321 131 30 chrX 4296659 4296896 -158303034 + HAL1 LINE L1 637 897 -1610 693 285 56 3 chrX 4296944 4297228 -158302702 + Charlie1b DNA MER1_type 56 354 -169 2689 80 17 8 chrX 4297437 4297798 -158302132 - THE1B LTR MaLR 0 364 1 232 253 127 0 chrX 4297931 4298010 -158301920 + L1ME4a LINE L1 5937 6025 -96 752 160 35 7 chrX 4298693 4298837 -158301093 - Tigger3b DNA MER2_type -808 423 276 507 223 0 29 chrX 4298839 4298942 -158300988 - Tigger3b DNA MER2_type -1131 100 1 324 194 19 29 chrX 4299162 4299265 -158300665 + (TA)n Simple_repeat Simple_repeat 1 102 0 249 231 0 23 chrX 4299276 4299406 -158300524 + (TA)n Simple_repeat Simple_repeat 2 128 0 751 166 24 11 chrX 4299407 4299667 -158300263 + (TCTA)n Simple_repeat Simple_repeat 1 263 0 491 321 121 25 chrX 4300752 4301116 -158298814 + LTR16A1 LTR ERVL 49 447 -10 1782 168 0 32 chrX 4302693 4303002 -158296928 - AluJb SINE Alu -13 299 1 871 146 0 7 chrX 4303368 4303512 -158296418 + FLAM_C SINE Alu 1 143 0 40 67 0 0 chrX 4303989 4304064 -158295866 + AT_rich Low_complexity Low_complexity 1 75 0 1741 166 0 3 chrX 4305390 4305733 -158294197 - AluSx SINE Alu 0 342 1 956 120 0 0 chrX 4305733 4305866 -158294064 - AluSq/x SINE Alu -177 135 3 393 118 59 0 chrX 4306594 4306662 -158293268 + L1P5 LINE L1 5708 5779 -377 1452 186 14 25 chrX 4308313 4308598 -158291332 - AluJo SINE Alu -30 282 1 552 126 35 14 chrX 4308952 4309095 -158290835 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 247 234 24 6 chrX 4309105 4309272 -158290658 + (TA)n Simple_repeat Simple_repeat 2 171 0 243 294 138 56 chrX 4309364 4309595 -158290335 - MIR SINE MIR -2 260 11 21 0 0 0 chrX 4309880 4309901 -158290029 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chrX 4310954 4310983 -158288947 + (GA)n Simple_repeat Simple_repeat 1 29 0 781 292 70 107 chrX 4311374 4311757 -158288173 + L1ME1 LINE L1 62 413 -5983 2607 97 8 3 chrX 4311757 4312118 -158287812 - THE1B LTR MaLR -1 363 1 781 292 70 107 chrX 4312118 4312378 -158287552 + L1ME1 LINE L1 413 681 -5715 1998 103 33 0 chrX 4312405 4312678 -158287252 - AluSx SINE Alu -30 282 1 410 255 0 0 chrX 4312708 4312810 -158287120 + L1ME1 LINE L1 693 794 -5602 2001 253 69 35 chrX 4312886 4313400 -158286530 + L1ME1 LINE L1 4357 4852 -1383 369 0 0 0 chrX 4313400 4313441 -158286489 + (CA)n Simple_repeat Simple_repeat 2 42 0 2001 253 69 35 chrX 4313441 4314198 -158285732 + L1ME1 LINE L1 4852 5673 -562 * 5437 70 28 8 chrX 4314195 4314949 -158284981 - L1P LINE L1 -2023 4123 3355 * 6019 95 3 9 chrX 4314948 4315832 -158284098 - L1P LINE L1 -3016 3130 2252 9052 73 7 0 chrX 4315832 4317847 -158282083 + L1PA7 LINE L1 4115 6152 -2 1005 268 26 60 chrX 4317847 4318348 -158281582 + L1ME1 LINE L1 5664 6147 -88 395 229 46 78 chrX 4318279 4318432 -158281498 + L1MA10 LINE L1 6240 6387 -16 * 21 57 0 0 chrX 4318578 4318613 -158281317 + AT_rich Low_complexity Low_complexity 1 35 0 4419 126 18 18 chrX 4319832 4320554 -158279376 + L1PA16 LINE L1 5444 6165 -1 2514 99 0 50 chrX 4321323 4321706 -158278224 - THE1B LTR MaLR 0 364 1 1235 76 6 0 chrX 4322173 4322344 -158277586 - L1PA5 LINE L1 -1 6153 5982 216 0 0 0 chrX 4322656 4322680 -158277250 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 4323739 4323761 -158276169 + AT_rich Low_complexity Low_complexity 1 22 0 297 183 0 0 chrX 4324054 4324114 -158275816 + GA-rich Low_complexity Low_complexity 1 60 0 1962 153 0 7 chrX 4324160 4324468 -158275462 + AluJb SINE Alu 1 306 -6 1704 163 3 7 chrX 4324904 4325187 -158274743 - AluJo SINE Alu -19 293 12 894 218 35 0 chrX 4326127 4326329 -158273601 + MER3 DNA MER1_type 1 209 0 408 277 168 7 chrX 4326349 4326486 -158273444 + MER5A DNA MER1_type 30 188 -1 2274 107 0 3 chrX 4327458 4327784 -158272146 + AluSx SINE Alu 12 336 0 1169 217 19 139 chrX 4328095 4328385 -158271545 - MLT1C LTR MaLR -42 425 214 4656 112 6 17 chrX 4328385 4329084 -158270846 - LTR8 LTR ERV1 0 691 1 1169 217 19 139 chrX 4329084 4329276 -158270654 - MLT1C LTR MaLR -253 214 1 24 53 0 0 chrX 4331553 4331591 -158268339 + AT_rich Low_complexity Low_complexity 1 38 0 1999 178 72 2 chrX 4331654 4332054 -158267876 - MSTA LTR MaLR 0 428 1 1017 110 0 7 chrX 4332054 4332209 -158267721 - MSTA-int LTR MaLR 0 1651 1498 374 364 78 33 chrX 4332256 4332772 -158267158 - ERVL LTR ERVL -648 5116 4578 2567 217 19 15 chrX 4333199 4333725 -158266205 + MER74A LTR ERVL 31 558 0 1765 166 3 14 chrX 4333820 4334115 -158265815 + AluJb SINE Alu 1 292 -20 1882 133 0 11 chrX 4334366 4334644 -158265286 + AluSx SINE Alu 1 275 -37 2239 149 31 24 chrX 4335330 4335713 -158264217 + LTR26 LTR ERV1 218 603 0 285 140 0 0 chrX 4336111 4336168 -158263762 + (TC)n Simple_repeat Simple_repeat 2 58 0 285 29 0 0 chrX 4336168 4336202 -158263728 + (CA)n Simple_repeat Simple_repeat 1 34 0 264 59 0 0 chrX 4336202 4336236 -158263694 + (GA)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chrX 4337345 4337384 -158262546 + AT_rich Low_complexity Low_complexity 1 39 0 240 242 0 0 chrX 4338035 4338097 -158261833 - L1M4 LINE L1 -2393 3753 3692 1352 6 17 17 chrX 4338101 4338279 -158261651 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1848 155 10 3 chrX 4338294 4338585 -158261345 - AluJb SINE Alu -19 293 1 422 310 7 35 chrX 4338733 4338875 -158261055 - MIR SINE MIR -89 173 36 299 293 0 57 chrX 4339270 4339393 -158260537 + L2 LINE L2 1799 1914 -1400 1412 139 9 0 chrX 4339442 4339672 -158260258 - MLT1B LTR MaLR 0 390 159 2087 172 6 10 chrX 4339673 4340063 -158259867 - MLT1B LTR MaLR 0 396 4 4179 74 26 0 chrX 4340096 4340661 -158259269 + LTR19B LTR ERV1 1 580 0 183 328 52 43 chrX 4340692 4340808 -158259122 - L2 LINE L2 -18 3254 3138 1807 153 45 29 chrX 4340980 4341107 -158258823 + L1MB3 LINE L1 5796 5919 -264 2357 194 31 82 chrX 4341107 4341752 -158258178 - LTR9 LTR ERV1 0 612 1 1807 153 45 29 chrX 4341752 4342002 -158257928 + L1MB3 LINE L1 5919 6179 -4 186 71 0 0 chrX 4342043 4342071 -158257859 + (CAA)n Simple_repeat Simple_repeat 3 30 0 231 324 59 0 chrX 4343292 4343360 -158256570 + MIR SINE MIR 24 95 -167 1503 134 20 24 chrX 4343962 4344208 -158255722 + AluJb SINE Alu 36 280 -32 689 221 0 6 chrX 4344213 4344385 -158255545 + GA-rich Low_complexity Low_complexity 1 171 0 261 0 0 0 chrX 4344386 4344415 -158255515 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 186 344 74 25 chrX 4344884 4345047 -158254883 + MIR3 SINE MIR 37 207 -1 239 283 33 22 chrX 4345868 4345960 -158253970 - MIR SINE MIR -122 140 48 1449 194 4 0 chrX 4346669 4346916 -158253014 + AluJo SINE Alu 39 286 -26 438 140 30 0 chrX 4346953 4347053 -158252877 + (TA)n Simple_repeat Simple_repeat 1 103 0 390 159 0 0 chrX 4347078 4347106 -158252824 + (TG)n Simple_repeat Simple_repeat 2 70 0 348 24 0 0 chrX 4347106 4347147 -158252783 + (TG)n Simple_repeat Simple_repeat 2 42 0 414 0 0 0 chrX 4347276 4347322 -158252608 + (TA)n Simple_repeat Simple_repeat 2 47 0 519 209 6 12 chrX 4348118 4348281 -158251649 + CT-rich Low_complexity Low_complexity 1 162 0 269 185 0 12 chrX 4348296 4348377 -158251553 + CT-rich Low_complexity Low_complexity 2 81 0 680 75 0 0 chrX 4349876 4349970 -158249960 - AluY SINE Alu -13 298 205 243 174 76 65 chrX 4350678 4350770 -158249160 + L1M4 LINE L1 3375 3467 -2679 333 222 42 14 chrX 4351231 4351375 -158248555 + (TA)n Simple_repeat Simple_repeat 2 149 0 283 220 71 64 chrX 4351438 4351579 -158248351 + L1M4 LINE L1 4123 4264 -1882 24 32 0 0 chrX 4351614 4351645 -158248285 + AT_rich Low_complexity Low_complexity 1 31 0 2059 145 0 0 chrX 4351794 4352098 -158247832 + AluSx SINE Alu 1 304 -8 727 153 0 0 chrX 4352319 4352437 -158247493 - FLAM_C SINE Alu -15 118 1 353 290 85 82 chrX 4352648 4353048 -158246882 + L1MB3 LINE L1 4010 4410 -1736 335 167 103 0 chrX 4353090 4353168 -158246762 + L1MB3 LINE L1 4502 4587 -1559 387 125 0 0 chrX 4353171 4353243 -158246687 + (TG)n Simple_repeat Simple_repeat 2 73 0 1813 177 57 0 chrX 4353461 4353850 -158246080 + L1MB3 LINE L1 5770 6180 -3 1064 98 6 0 chrX 4354300 4354464 -158245466 + (GGAA)n Simple_repeat Simple_repeat 3 167 0 33 0 0 0 chrX 4354557 4354590 -158245340 + AT_rich Low_complexity Low_complexity 1 33 0 406 185 39 0 chrX 4355342 4355472 -158244458 + CT-rich Low_complexity Low_complexity 1 135 0 21 0 0 0 chrX 4355886 4355907 -158244023 + AT_rich Low_complexity Low_complexity 1 21 0 1135 183 0 29 chrX 4355907 4356115 -158243815 - AluJo SINE Alu -24 288 87 22 0 0 0 chrX 4356211 4356233 -158243697 + AT_rich Low_complexity Low_complexity 1 22 0 227 31 31 0 chrX 4356317 4356349 -158243581 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 204 250 0 0 chrX 4356545 4356589 -158243341 - MIR SINE MIR 0 262 219 606 182 0 0 chrX 4356952 4357062 -158242868 - L1MA9 LINE L1 -33 6279 6170 1562 154 66 22 chrX 4357247 4357519 -158242411 + AluJb SINE Alu 1 284 -28 311 208 13 0 chrX 4357557 4357634 -158242296 + L1MA7 LINE L1 6210 6287 -4 37 0 0 0 chrX 4357635 4357672 -158242258 + AT_rich Low_complexity Low_complexity 1 37 0 2121 221 0 43 chrX 4357877 4358365 -158241565 + MLT1C LTR MaLR 1 467 0 2726 179 77 11 chrX 4358735 4359294 -158240636 + L1MA3 LINE L1 5545 6140 -165 2851 86 64 24 chrX 4359302 4359722 -158240208 + MLT2A1 LTR ERVL 1 437 -7 765 170 0 25 chrX 4359759 4359918 -158240012 + L1MA3 LINE L1 6151 6305 0 6602 55 2 28 chrX 4360028 4360900 -158239030 - L1PA7 LINE L1 -6 6148 5299 1788 162 18 26 chrX 4361027 4361367 -158238563 + THE1C LTR MaLR 1 337 -38 1097 143 0 0 chrX 4362180 4362369 -158237561 - L1MA3 LINE L1 -3 6302 6114 401 176 0 0 chrX 4362370 4362444 -158237486 + L1MA3 LINE L1 6037 6110 -195 24 0 0 0 chrX 4363526 4363550 -158236380 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chrX 4364918 4364959 -158234971 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 4365224 4365245 -158234685 + AT_rich Low_complexity Low_complexity 1 21 0 256 24 24 24 chrX 4365305 4365347 -158234583 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 14239 25 3 0 chrX 4365347 4367798 -158232132 - L1PA3 LINE L1 -2 6153 3697 8472 31 0 1 chrX 4367799 4368842 -158231088 + L1PA3 LINE L1 2650 3691 -2455 262 284 0 0 chrX 4369690 4369785 -158230145 - L1MB8 LINE L1 -2 6176 6082 1098 242 100 24 chrX 4373391 4373824 -158226106 - MLT1C LTR MaLR 0 467 1 310 363 67 9 chrX 4373824 4374047 -158225883 + L1MC5 LINE L1 7666 7901 -60 21 0 0 0 chrX 4374075 4374096 -158225834 + AT_rich Low_complexity Low_complexity 1 21 0 601 153 19 10 chrX 4374098 4374197 -158225733 - L1MA7 LINE L1 -497 5806 5705 2682 136 20 36 chrX 4374197 4374695 -158225235 + L1MA7 LINE L1 5800 6290 -1 601 153 19 10 chrX 4374695 4374711 -158225219 - L1MB8 LINE L1 -598 5705 5691 306 0 0 0 chrX 4374821 4374855 -158225075 + (CA)n Simple_repeat Simple_repeat 2 35 0 621 229 10 47 chrX 4374863 4375055 -158224875 + L1MB5 LINE L1 5980 6164 -10 24 0 0 0 chrX 4375336 4375360 -158224570 + AT_rich Low_complexity Low_complexity 1 24 0 3759 90 14 31 chrX 4375360 4375949 -158223981 - L1MA1 LINE L1 -3 6299 5721 1006 87 67 0 chrX 4375959 4376108 -158223822 - L1MA1 LINE L1 -696 5606 5448 1816 152 16 70 chrX 4376427 4376801 -158223129 - MLT1A1 LTR MaLR 0 365 12 910 229 161 0 chrX 4376808 4377088 -158222842 + MLT1D LTR MaLR 181 505 0 333 323 123 13 chrX 4377823 4377978 -158221952 - MIR SINE MIR -88 174 3 2254 120 22 27 chrX 4378020 4378386 -158221544 - THE1B LTR MaLR 0 364 1 2178 117 10 67 chrX 4378757 4379143 -158220787 + THE1B LTR MaLR 1 364 0 246 62 0 0 chrX 4379261 4379293 -158220637 + (CA)n Simple_repeat Simple_repeat 1 32 0 1517 197 55 0 chrX 4379674 4379963 -158219967 + AluJb SINE Alu 1 305 -7 315 313 172 0 chrX 4379995 4380129 -158219801 - MER5A DNA MER1_type -1 188 32 1361 228 81 29 chrX 4380130 4380574 -158219356 + MLT1C LTR MaLR 1 467 0 1793 219 77 11 chrX 4381729 4382011 -158217919 + MLT1D LTR MaLR 22 309 -158 234 0 0 0 chrX 4382011 4382037 -158217893 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1793 219 77 11 chrX 4382037 4382208 -158217722 + MLT1D LTR MaLR 309 467 0 26 30 0 0 chrX 4383488 4383521 -158216409 + AT_rich Low_complexity Low_complexity 1 33 0 257 237 31 10 chrX 4383568 4383665 -158216265 + (TA)n Simple_repeat Simple_repeat 2 100 0 401 240 91 32 chrX 4383768 4383922 -158216008 - MIR SINE MIR -71 191 29 286 301 65 32 chrX 4383968 4384036 -158215894 + MER5A DNA MER1_type 63 138 -51 2160 55 0 0 chrX 4384036 4384308 -158215622 - L1PA6 LINE L1 -8 6146 5875 286 301 65 32 chrX 4384308 4384362 -158215568 + MER5A DNA MER1_type 138 189 0 1052 234 76 45 chrX 4384717 4385114 -158214816 - MLT1C LTR MaLR 0 467 59 239 95 48 0 chrX 4385123 4385165 -158214765 + (TATG)n Simple_repeat Simple_repeat 2 45 0 637 308 39 4 chrX 4386855 4387089 -158212841 + MIR SINE MIR 18 259 -3 219 215 0 31 chrX 4387386 4387413 -158212517 + (TA)n Simple_repeat Simple_repeat 2 28 -36 2235 85 10 14 chrX 4387413 4387544 -158212386 + AluSx SINE Alu 3 133 -179 2532 57 0 0 chrX 4387544 4387845 -158212085 + AluY SINE Alu 1 301 -10 2235 85 10 14 chrX 4387845 4388007 -158211923 + AluSx SINE Alu 133 295 -17 219 215 0 31 chrX 4388007 4388044 -158211886 + (TA)n Simple_repeat Simple_repeat 28 64 0 24 0 0 0 chrX 4388146 4388170 -158211760 + AT_rich Low_complexity Low_complexity 1 24 0 1974 167 12 6 chrX 4388997 4389338 -158210592 - MER61A LTR ERV1 0 343 1 517 215 35 7 chrX 4389780 4389932 -158209998 - MER58B DNA MER1_type -25 316 33 1121 189 0 32 chrX 4390887 4391104 -158208826 + AluJo SINE Alu 1 210 -102 414 171 98 0 chrX 4391132 4391214 -158208716 + AluJo SINE Alu 192 281 -31 1313 66 0 11 chrX 4391221 4391403 -158208527 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 231 36 0 0 chrX 4391403 4391431 -158208499 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1082 126 0 11 chrX 4391433 4391615 -158208315 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1837 153 10 7 chrX 4391620 4391920 -158208010 + AluSx SINE Alu 1 301 -11 1371 236 159 14 chrX 4392225 4392666 -158207264 + MLT1D LTR MaLR 1 505 0 1565 187 32 7 chrX 4393022 4393305 -158206625 + AluJo SINE Alu 1 290 -22 28 29 0 0 chrX 4393305 4393340 -158206590 + AT_rich Low_complexity Low_complexity 1 35 0 1334 238 116 7 chrX 4393589 4394022 -158205908 + MLT2B1 LTR ERVL 1 480 -40 2016 146 0 10 chrX 4394079 4394380 -158205550 + AluSx SINE Alu 1 298 -14 1082 248 75 9 chrX 4394386 4394708 -158205222 - MER2 DNA MER2_type 0 344 2 306 253 6 22 chrX 4394875 4395057 -158204873 + (TA)n Simple_repeat Simple_repeat 1 179 0 200 318 0 0 chrX 4395060 4395126 -158204804 + (CATA)n Simple_repeat Simple_repeat 1 66 0 321 26 0 0 chrX 4395126 4395164 -158204766 + (TG)n Simple_repeat Simple_repeat 1 38 0 1263 39 0 6 chrX 4395632 4395788 -158204142 - L1PA4 LINE L1 -8 6147 5993 692 194 61 0 chrX 4396578 4396743 -158203187 - MER53 DNA DNA -3 186 12 675 240 23 73 chrX 4397025 4397124 -158202806 - L1M4 LINE L1 -2659 3487 3385 3727 126 0 13 chrX 4397124 4397658 -158202272 - MER1A DNA MER1_type 0 527 1 675 240 23 73 chrX 4397658 4397887 -158202043 - L1M4 LINE L1 -2761 3385 3174 23 33 0 0 chrX 4398188 4398218 -158201712 + AT_rich Low_complexity Low_complexity 1 30 0 * 250 114 0 0 chrX 4398212 4398247 -158201683 - L1PA15 LINE L1 -596 5569 5535 3738 152 3 0 chrX 4398244 4398848 -158201082 + L1PA15 LINE L1 5560 6165 0 978 132 0 0 chrX 4399106 4399290 -158200640 + L1PB3 LINE L1 6006 6189 0 4292 138 25 4 chrX 4400987 4401717 -158198213 + L1MA4A LINE L1 5555 6299 -4 2457 88 70 3 chrX 4402263 4402604 -158197326 - THE1B LTR MaLR 0 364 1 358 250 0 0 chrX 4404253 4404333 -158195597 + MLT1E1 LTR MaLR 51 130 -463 965 248 37 25 chrX 4404460 4404756 -158195174 + MLT1E1 LTR MaLR 288 654 0 21 0 0 0 chrX 4404997 4405018 -158194912 + AT_rich Low_complexity Low_complexity 1 21 0 1151 102 11 0 chrX 4405316 4405492 -158194438 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 440 190 0 10 chrX 4405497 4405597 -158194333 + GA-rich Low_complexity Low_complexity 4 102 0 1773 153 52 0 chrX 4405672 4405960 -158193970 + AluSx SINE Alu 3 305 -7 22 0 0 0 chrX 4406132 4406154 -158193776 + AT_rich Low_complexity Low_complexity 1 22 0 1672 194 75 75 chrX 4406218 4406738 -158193192 + MLT2B1 LTR ERVL 1 520 0 1159 257 39 41 chrX 4407088 4407426 -158192504 - MLT1G LTR MaLR -11 579 243 308 328 60 40 chrX 4407686 4407887 -158192043 - L1M4c LINE L1 -4735 1649 1445 23 0 0 0 chrX 4408190 4408213 -158191717 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chrX 4409024 4409068 -158190862 + AT_rich Low_complexity Low_complexity 1 44 0 2760 88 0 11 chrX 4409691 4410068 -158189862 - THE1C LTR MaLR 0 375 3 282 289 0 7 chrX 4410125 4410264 -158189666 + CT-rich Low_complexity Low_complexity 1 137 0 * 934 137 6 6 chrX 4410258 4410433 -158189497 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2202 110 0 3 chrX 4410832 4411142 -158188788 - AluSq SINE Alu -4 309 1 30 0 0 0 chrX 4411524 4411554 -158188376 + AT_rich Low_complexity Low_complexity 1 30 0 2434 161 5 31 chrX 4412775 4413221 -158186709 + Tigger2a DNA MER2_type 1 434 0 2481 101 28 6 chrX 4413630 4413986 -158185944 - THE1B LTR MaLR 0 364 1 193 392 13 0 chrX 4414047 4414126 -158185804 - L2 LINE L2 -27 3286 3207 203 175 0 0 chrX 4414514 4414554 -158185376 + T-rich Low_complexity Low_complexity 1 40 0 1832 246 109 42 chrX 4414865 4415228 -158184702 + L1MC/D LINE L1 1174 1511 -4915 3374 81 0 62 chrX 4415228 4415372 -158184558 + L1PB1 LINE L1 5665 5816 -335 183 42 0 0 chrX 4415372 4415396 -158184534 + (CA)n Simple_repeat Simple_repeat 2 25 0 3374 81 0 62 chrX 4415396 4415768 -158184162 + L1PB1 LINE L1 5816 6149 -2 1832 246 109 42 chrX 4415768 4415792 -158184138 + L1MC/D LINE L1 1511 1532 -4894 1638 133 4 0 chrX 4415792 4416025 -158183905 + AluSq SINE Alu 1 234 -79 1832 246 109 42 chrX 4416025 4416116 -158183814 + L1MC/D LINE L1 1532 1615 -4811 12334 24 0 0 chrX 4416116 4418334 -158181596 + L1PA3 LINE L1 3935 6152 -3 1832 246 109 42 chrX 4418334 4418949 -158180981 + L1MC/D LINE L1 1615 2343 -4083 1778 281 42 81 chrX 4418965 4419344 -158180586 + L1MC/D LINE L1 4070 4462 -1964 2408 53 0 0 chrX 4419344 4419650 -158180280 + AluY SINE Alu 1 306 0 1778 281 42 81 chrX 4419650 4420612 -158179318 + L1MC/D LINE L1 4462 5360 -1066 253 62 62 21 chrX 4420743 4420791 -158179139 - L1MD3 LINE L1 -1165 6830 6781 338 252 0 44 chrX 4420839 4420974 -158178956 - L1M4 LINE L1 -1819 4327 4199 189 195 0 0 chrX 4420992 4421033 -158178897 + (CATA)n Simple_repeat Simple_repeat 4 44 0 227 132 0 0 chrX 4421038 4421076 -158178854 - L1MA9 LINE L1 -82 6230 6193 1837 203 45 25 chrX 4421080 4421662 -158178268 + L1MC/D LINE L1 5386 5983 -743 2543 162 7 4 chrX 4422609 4423065 -158176865 + L1PA16 LINE L1 5710 6166 0 225 183 33 33 chrX 4423663 4423723 -158176207 + GA-rich Low_complexity Low_complexity 4 63 0 252 86 0 0 chrX 4423809 4423844 -158176086 + (T)n Simple_repeat Simple_repeat 1 35 0 1845 74 4 0 chrX 4423855 4424084 -158175846 - AluSp SINE Alu -83 230 1 38 75 0 0 chrX 4424366 4424446 -158175484 + AT_rich Low_complexity Low_complexity 1 80 0 352 222 35 23 chrX 4424451 4424622 -158175308 + (TA)n Simple_repeat Simple_repeat 1 173 0 242 214 38 10 chrX 4424690 4424987 -158174943 + (TA)n Simple_repeat Simple_repeat 1 305 0 330 153 0 0 chrX 4426738 4426797 -158173133 + GA-rich Low_complexity Low_complexity 2 60 0 613 285 29 37 chrX 4426822 4427064 -158172866 - LTR16A1 LTR ERVL 0 457 218 369 263 60 8 chrX 4427203 4427336 -158172594 - LTR16A1 LTR ERVL -100 357 218 477 151 0 0 chrX 4427336 4427422 -158172508 + GA-rich Low_complexity Low_complexity 2 87 0 421 194 68 29 chrX 4427507 4427592 -158172338 + MER20 DNA MER1_type 7 95 -124 1975 149 26 29 chrX 4427592 4427975 -158171955 - LTR8 LTR ERV1 0 691 310 1584 181 6 40 chrX 4428044 4428370 -158171560 - LTR8 LTR ERV1 -376 315 1 462 250 17 8 chrX 4428370 4428490 -158171440 + MER20 DNA MER1_type 95 215 -4 325 316 0 34 chrX 4428504 4428621 -158171309 - LTR16A1 LTR ERVL -342 115 3 6345 47 0 0 chrX 4428697 4429470 -158170460 - L1PA5 LINE L1 0 6154 5382 1808 144 115 11 chrX 4429506 4429911 -158170019 - MER84 LTR ERVI -2 505 1 22 0 0 0 chrX 4430131 4430153 -158169777 + AT_rich Low_complexity Low_complexity 1 22 0 1512 205 98 8 chrX 4430960 4431316 -158168614 + MLT2C1 LTR ERVL 8 395 -2 211 200 16 54 chrX 4431615 4431800 -158168130 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 231 258 0 15 chrX 4431807 4431873 -158168057 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 568 58 58 29 chrX 4431876 4432015 -158167915 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 244 287 149 35 chrX 4432380 4432554 -158167376 - L1MC/D LINE L1 -2172 5636 5443 1914 180 20 9 chrX 4432706 4433050 -158166880 + MER7A DNA MER2_type 1 346 0 351 0 0 0 chrX 4433242 4433281 -158166649 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 61 0 0 chrX 4433281 4433314 -158166616 + (GA)n Simple_repeat Simple_repeat 2 34 0 378 319 70 75 chrX 4433521 4434133 -158165797 - HAL1 LINE L1 -1051 1456 848 320 109 0 18 chrX 4434196 4434251 -158165679 + (TCC)n Simple_repeat Simple_repeat 3 56 0 237 224 0 0 chrX 4434252 4434301 -158165629 + CT-rich Low_complexity Low_complexity 2 50 0 566 135 34 14 chrX 4434394 4434542 -158165388 + CT-rich Low_complexity Low_complexity 1 151 0 189 226 36 0 chrX 4434556 4434640 -158165290 + CT-rich Low_complexity Low_complexity 6 92 0 238 257 38 87 chrX 4435846 4436029 -158163901 - MIR SINE MIR -17 245 72 1804 130 0 50 chrX 4436792 4437091 -158162839 - AluJb SINE Alu -26 286 3 506 302 14 0 chrX 4437096 4437235 -158162695 - MER5B DNA MER1_type -31 147 7 289 173 71 16 chrX 4437759 4437886 -158162044 + (TA)n Simple_repeat Simple_repeat 1 134 0 2421 193 38 24 chrX 4437918 4438452 -158161478 - L1MB4 LINE L1 -40 6140 5600 205 305 46 30 chrX 4438505 4438636 -158161294 - MIR SINE MIR -127 135 3 706 312 20 8 chrX 4439039 4439286 -158160644 + MIR SINE MIR 12 261 -1 343 237 0 0 chrX 4439457 4439533 -158160397 + MLT1F1 LTR MaLR 84 159 -408 1633 170 0 14 chrX 4439549 4439831 -158160099 - AluJo SINE Alu -9 303 26 233 239 0 41 chrX 4440265 4440333 -158159597 - MIR SINE MIR -88 120 61 2426 86 0 0 chrX 4440338 4440640 -158159290 - AluSx SINE Alu -9 303 2 314 305 26 20 chrX 4442047 4442198 -158157732 - L1MC4 LINE L1 -975 7067 6916 556 276 35 44 chrX 4442219 4442534 -158157396 + L1MC5 LINE L1 7087 7398 -563 4217 154 18 11 chrX 4442542 4443251 -158156679 + MER50 LTR ERV1 2 715 -19 292 280 6 12 chrX 4443459 4443627 -158156303 + GA-rich Low_complexity Low_complexity 3 169 0 228 310 0 0 chrX 4444187 4444245 -158155685 + MIR SINE MIR 11 68 -194 271 234 13 26 chrX 4444304 4444381 -158155549 + MIR SINE MIR 174 249 -13 391 231 12 89 chrX 4444506 4444675 -158155255 + MIR SINE MIR 94 249 -13 734 331 33 19 chrX 4445024 4445417 -158154513 - LTR16A LTR ERVL 0 457 52 25 0 0 0 chrX 4445896 4445921 -158154009 + AT_rich Low_complexity Low_complexity 1 25 0 836 178 51 47 chrX 4446067 4446281 -158153649 + AluJo SINE Alu 85 299 -13 228 227 13 53 chrX 4446326 4446401 -158153529 - L1ME4a LINE L1 -100 6021 5950 22 0 0 0 chrX 4446408 4446430 -158153500 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chrX 4447212 4447247 -158152683 + (CA)n Simple_repeat Simple_repeat 2 36 0 215 149 0 21 chrX 4448460 4448507 -158151423 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 335 233 0 7 chrX 4448548 4448694 -158151236 + (TA)n Simple_repeat Simple_repeat 2 146 0 276 30 0 0 chrX 4448694 4448727 -158151203 + (GA)n Simple_repeat Simple_repeat 2 34 0 217 338 0 0 chrX 4449442 4449510 -158150420 + MIR3 SINE MIR 113 180 -28 192 77 0 0 chrX 4452864 4452890 -158147040 + (TG)n Simple_repeat Simple_repeat 2 27 0 1485 176 10 60 chrX 4452890 4453191 -158146739 - AluJo SINE Alu -26 286 1 333 309 19 37 chrX 4453740 4453902 -158146028 + MER3 DNA MER1_type 17 128 -81 221 318 0 0 chrX 4453928 4453994 -158145936 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 206 336 10 0 chrX 4455206 4455310 -158144620 + (TA)n Simple_repeat Simple_repeat 2 106 0 207 0 0 0 chrX 4455310 4455333 -158144597 + (CA)n Simple_repeat Simple_repeat 2 24 0 1620 191 19 3 chrX 4455341 4455655 -158144275 - MER2 DNA MER2_type -25 320 2 304 141 18 61 chrX 4455660 4455823 -158144107 + (TA)n Simple_repeat Simple_repeat 1 156 0 193 130 15 84 chrX 4455841 4455972 -158143958 + (TA)n Simple_repeat Simple_repeat 1 122 0 312 243 23 34 chrX 4455991 4456012 -158143918 + (TA)n Simple_repeat Simple_repeat 2 22 -154 1799 144 3 89 chrX 4456012 4456338 -158143592 + AluSx SINE Alu 1 298 -14 312 243 23 34 chrX 4456338 4456493 -158143437 + (TA)n Simple_repeat Simple_repeat 22 176 0 282 224 0 0 chrX 4456582 4456640 -158143290 + L1MCc LINE L1 -540 4294966813 -6347 276 348 105 20 chrX 4457364 4457715 -158142215 + L1MCc LINE L1 597 977 -4887 41 48 0 0 chrX 4457726 4457788 -158142142 + AT_rich Low_complexity Low_complexity 1 62 0 263 299 82 42 chrX 4457897 4458325 -158141605 + L1MCc LINE L1 1249 1748 -4815 479 261 144 39 chrX 4458359 4458692 -158141238 + L1MCc LINE L1 2696 3063 -3319 225 300 0 12 chrX 4458748 4458828 -158141102 + GA-rich Low_complexity Low_complexity 1 79 0 27 29 0 0 chrX 4458831 4458865 -158141065 + AT_rich Low_complexity Low_complexity 1 34 0 886 249 75 34 chrX 4458924 4459401 -158140529 + L1ME3 LINE L1 5665 6161 -1 349 101 62 23 chrX 4460064 4460193 -158139737 + (TA)n Simple_repeat Simple_repeat 1 134 0 800 274 19 63 chrX 4461387 4461766 -158138164 - L1ME2 LINE L1 -11 6153 5792 2342 75 6 25 chrX 4461898 4462216 -158137714 - AluSx SINE Alu 0 312 1 1866 109 60 0 chrX 4463218 4463530 -158136400 - AluSx SINE Alu 0 328 1 195 222 0 0 chrX 4464006 4464051 -158135879 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 0 0 0 chrX 4464112 4464141 -158135789 + AT_rich Low_complexity Low_complexity 1 29 0 2333 98 131 6 chrX 4464434 4464800 -158135130 + MSTA LTR MaLR 14 425 -3 333 221 168 44 chrX 4464847 4464960 -158134970 - MER58A DNA MER1_type 0 156 30 227 250 0 0 chrX 4465768 4465824 -158134106 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chrX 4466303 4466327 -158133603 + AT_rich Low_complexity Low_complexity 1 24 0 1090 262 62 59 chrX 4466614 4467102 -158132828 + MLT1D LTR MaLR 16 504 -1 1977 142 0 34 chrX 4467961 4468284 -158131646 + AluJb SINE Alu 1 312 0 801 103 135 70 chrX 4468347 4468503 -158131427 - L1MC1 LINE L1 0 6333 6168 240 203 203 0 chrX 4468572 4468636 -158131294 - LTR16B LTR ERVL 0 464 388 215 329 0 0 chrX 4468710 4468789 -158131141 + T-rich Low_complexity Low_complexity 4 82 0 2096 151 30 30 chrX 4468804 4469168 -158130762 - THE1B LTR MaLR 0 364 1 1068 133 0 0 chrX 4469207 4469387 -158130543 + (CAT)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chrX 4469399 4469423 -158130507 + (CACCAT)n Simple_repeat Simple_repeat 1 24 0 1734 173 119 61 chrX 4469866 4470276 -158129654 - Tigger2a DNA MER2_type 0 434 1 1279 121 0 0 chrX 4471095 4471268 -158128662 + AluSx SINE Alu 1 173 -139 481 143 11 55 chrX 4471269 4471360 -158128570 + MSTA LTR MaLR 342 428 0 1060 164 180 16 chrX 4471387 4471631 -158128299 - MSTA LTR MaLR -134 294 11 2110 127 0 7 chrX 4472119 4472418 -158127512 - AluSx SINE Alu -15 297 1 1449 81 0 0 chrX 4472444 4472630 -158127300 - L1P LINE L1 -1989 4157 3972 274 265 70 114 chrX 4472772 4473044 -158126886 - MLT1J LTR MaLR -23 488 229 3303 233 31 17 chrX 4473358 4474238 -158125692 - L1MB7 LINE L1 -5 6179 5288 198 258 79 45 chrX 4474619 4474708 -158125222 - L3b LINE CR1 -216 1367 1276 758 233 48 37 chrX 4475660 4475849 -158124081 - MLT1E LTR MaLR -32 561 371 207 311 67 11 chrX 4476132 4476222 -158123708 + L2 LINE L2 2947 3041 -231 1737 146 26 0 chrX 4476340 4476607 -158123323 - AluSx SINE Alu -38 274 1 5476 98 24 17 chrX 4476956 4477616 -158122314 + L1PB1 LINE L1 5299 5968 -183 1978 149 0 7 chrX 4477616 4477917 -158122013 + AluSx SINE Alu 7 305 -7 5476 98 24 17 chrX 4477917 4478096 -158121834 + L1PB1 LINE L1 5968 6144 -7 21 36 0 0 chrX 4478415 4478443 -158121487 + AT_rich Low_complexity Low_complexity 1 28 0 199 146 36 0 chrX 4478844 4478899 -158121031 + T-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chrX 4479004 4479025 -158120905 + AT_rich Low_complexity Low_complexity 1 21 0 201 286 75 60 chrX 4479029 4479162 -158120768 - MIR SINE MIR -96 166 32 597 99 0 62 chrX 4479826 4480018 -158119912 + (TA)n Simple_repeat Simple_repeat 1 180 0 1693 160 10 10 chrX 4480286 4480593 -158119337 + L1MA8 LINE L1 5750 6056 -235 511 203 8 8 chrX 4480593 4480722 -158119208 + L1MA7 LINE L1 6159 6291 0 557 146 10 10 chrX 4480723 4480826 -158119104 + L1MC3 LINE L1 7682 7784 -1 227 200 50 50 chrX 4481031 4481111 -158118819 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 183 184 0 0 chrX 4481116 4481154 -158118776 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chrX 4482095 4482120 -158117810 + AT_rich Low_complexity Low_complexity 1 25 0 203 291 0 0 chrX 4484110 4484165 -158115765 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2067 147 0 3 chrX 4484236 4484548 -158115382 + AluSx SINE Alu 1 311 -1 445 272 80 0 chrX 4486783 4486908 -158113022 + MIR SINE MIR 84 218 -44 2818 222 39 47 chrX 4487921 4488150 -158111780 + L1MB8 LINE L1 4590 4819 -1359 2472 151 25 23 chrX 4488150 4488582 -158111348 - Tigger2a DNA MER2_type 0 434 2 2818 222 39 47 chrX 4488582 4489220 -158110710 + L1MB8 LINE L1 4819 5428 -750 1846 163 20 0 chrX 4489220 4489514 -158110416 + AluSx SINE Alu 1 300 -12 2818 222 39 47 chrX 4489514 4490055 -158109875 + L1MB8 LINE L1 5428 5972 -206 2183 168 28 30 chrX 4490346 4490852 -158109078 + L1MA8 LINE L1 5780 6284 -7 916 174 54 0 chrX 4490948 4491097 -158108833 - AluJo SINE Alu -27 285 129 723 104 0 0 chrX 4491116 4491222 -158108708 + (TC)n Simple_repeat Simple_repeat 1 106 0 788 173 0 0 chrX 4491222 4491355 -158108575 - AluJo SINE Alu -169 133 1 295 216 57 11 chrX 4491686 4491774 -158108156 - AluSg SINE Alu -207 93 2 1282 193 68 15 chrX 4492036 4492300 -158107630 + AluJo SINE Alu 1 278 -34 709 181 129 0 chrX 4492301 4492456 -158107474 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 4492456 4492491 -158107439 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 4492520 4492560 -158107370 + AT_rich Low_complexity Low_complexity 1 40 0 2026 131 0 3 chrX 4493017 4493307 -158106623 + AluSx SINE Alu 1 289 -23 445 272 80 0 chrX 4495564 4495689 -158104241 + MIR SINE MIR 84 218 -44 292 300 57 37 chrX 4496612 4497103 -158102827 + MER90 LTR ERV1 1 597 -17 210 158 0 0 chrX 4497154 4497192 -158102738 + T-rich Low_complexity Low_complexity 1 38 0 235 229 84 36 chrX 4497375 4497458 -158102472 + MER5A DNA MER1_type 26 112 -77 328 222 49 0 chrX 4497985 4498066 -158101864 + L2 LINE L2 3188 3272 0 412 271 23 17 chrX 4498199 4498359 -158101571 + (TATATG)n Simple_repeat Simple_repeat 1 159 -460 1432 189 66 0 chrX 4498359 4498677 -158101253 - MER44D DNA MER2_type 0 609 1 412 271 23 17 chrX 4498677 4498695 -158101235 + (TATATG)n Simple_repeat Simple_repeat 159 175 -444 270 0 0 0 chrX 4498695 4498725 -158101205 + (CA)n Simple_repeat Simple_repeat 2 31 0 412 271 23 17 chrX 4498725 4498815 -158101115 + (TATATG)n Simple_repeat Simple_repeat 175 619 0 291 256 23 11 chrX 4498852 4498936 -158100994 + (TA)n Simple_repeat Simple_repeat 2 84 -95 1712 206 21 0 chrX 4498936 4499276 -158100654 - MER7A DNA MER2_type 0 346 2 291 256 23 11 chrX 4499276 4499367 -158100563 + (TA)n Simple_repeat Simple_repeat 84 179 0 237 180 0 0 chrX 4500350 4500400 -158099530 + T-rich Low_complexity Low_complexity 1 50 0 226 244 0 0 chrX 4502153 4502198 -158097732 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 240 163 0 0 chrX 4502844 4502887 -158097043 + CT-rich Low_complexity Low_complexity 3 45 0 803 246 65 5 chrX 4504163 4504362 -158095568 + MER20 DNA MER1_type 9 219 0 251 325 117 21 chrX 4505304 4505492 -158094438 + MIR SINE MIR 47 252 -10 213 179 0 39 chrX 4505688 4505766 -158094164 + (TA)n Simple_repeat Simple_repeat 1 75 0 701 207 14 24 chrX 4507223 4507726 -158092204 + CT-rich Low_complexity Low_complexity 1 497 0 237 303 57 51 chrX 4508795 4508970 -158090960 - MER113 DNA MER1_type? -1 520 345 180 158 0 0 chrX 4509012 4509050 -158090880 + T-rich Low_complexity Low_complexity 1 38 0 601 270 17 0 chrX 4509050 4509224 -158090706 - MER113 DNA MER1_type? -213 308 132 1452 242 25 28 chrX 4509463 4509897 -158090033 + MLT1C LTR MaLR 1 433 -34 1881 160 0 22 chrX 4509900 4510218 -158089712 - AluJb SINE Alu 0 312 2 180 179 0 0 chrX 4510991 4511030 -158088900 + (TATG)n Simple_repeat Simple_repeat 1 39 0 409 196 17 12 chrX 4511118 4511291 -158088639 + (TA)n Simple_repeat Simple_repeat 1 174 0 25 31 0 0 chrX 4511293 4511325 -158088605 + AT_rich Low_complexity Low_complexity 1 32 0 1778 158 13 20 chrX 4511455 4511581 -158088349 + AluJo SINE Alu 6 131 -181 1581 178 34 17 chrX 4511581 4511879 -158088051 + AluJo SINE Alu 1 303 -9 1778 158 13 20 chrX 4511879 4512056 -158087874 + AluJo SINE Alu 131 307 -5 336 176 0 0 chrX 4512258 4512326 -158087604 + (TG)n Simple_repeat Simple_repeat 1 68 0 180 0 0 0 chrX 4513416 4513436 -158086494 + (CA)n Simple_repeat Simple_repeat 2 21 0 1404 178 83 14 chrX 4515026 4515302 -158084628 - AluJb SINE Alu -17 295 1 205 294 101 37 chrX 4515686 4515795 -158084135 - MIR3 SINE MIR 0 208 93 189 0 0 0 chrX 4515854 4515875 -158084055 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1683 134 31 28 chrX 4515875 4516155 -158083775 - AluJo SINE Alu -28 284 1 1756 120 8 8 chrX 4516175 4516434 -158083496 + AluSx SINE Alu 38 296 -16 522 222 6 11 chrX 4517220 4517400 -158082530 + GA-rich Low_complexity Low_complexity 1 179 0 389 252 7 0 chrX 4517423 4517574 -158082356 + GA-rich Low_complexity Low_complexity 1 152 0 1378 166 81 8 chrX 4517974 4518221 -158081709 + AluJo SINE Alu 7 271 -41 3394 167 58 36 chrX 4521076 4521416 -158078514 + LTR8A LTR ERV1 1 332 -395 826 125 0 17 chrX 4521416 4521536 -158078394 - L1PA15 LINE L1 -8 6157 6040 3394 167 58 36 chrX 4521536 4521907 -158078023 + LTR8A LTR ERV1 332 727 0 986 139 7 0 chrX 4522427 4522700 -158077230 + GA-rich Low_complexity Low_complexity 1 275 0 21 0 0 0 chrX 4522822 4522843 -158077087 + AT_rich Low_complexity Low_complexity 1 21 0 2885 107 0 0 chrX 4523334 4523698 -158076232 + THE1B LTR MaLR 1 364 0 362 151 14 0 chrX 4524177 4524250 -158075680 + (TA)n Simple_repeat Simple_repeat 2 75 0 2170 122 0 3 chrX 4525139 4525435 -158074495 - AluSx SINE Alu -17 295 1 1952 164 3 0 chrX 4526027 4526338 -158073592 - AluSx SINE Alu 0 312 1 272 321 0 0 chrX 4527110 4527191 -158072739 + MIR SINE MIR 89 169 -93 459 301 68 0 chrX 4528857 4529020 -158070910 - MLT1D LTR MaLR -264 241 68 1839 113 77 116 chrX 4529063 4529416 -158070514 + Charlie3 DNA MER1_type 1 2712 0 608 259 145 0 chrX 4529434 4529662 -158070268 - L1M4 LINE L1 -849 5297 5037 301 345 106 32 chrX 4529730 4530191 -158069739 - L2 LINE L2 -339 2975 2481 314 80 20 0 chrX 4530719 4530769 -158069161 + (TA)n Simple_repeat Simple_repeat 1 51 0 533 28 14 0 chrX 4530977 4531048 -158068882 + (GA)n Simple_repeat Simple_repeat 2 73 0 1670 124 0 0 chrX 4531835 4532076 -158067854 + L1MA5A LINE L1 6051 6291 -6 1995 117 6 22 chrX 4532167 4532483 -158067447 + AluSx SINE Alu 2 312 0 450 231 28 14 chrX 4532556 4532699 -158067231 - L1MB4 LINE L1 -36 6144 6000 1536 143 16 91 chrX 4532708 4533016 -158066914 - AluJb SINE Alu -16 296 12 2183 130 95 18 chrX 4533016 4533354 -158066576 - THE1B LTR MaLR 0 364 1 3084 103 2 7 chrX 4534174 4534601 -158065329 + L1PB1 LINE L1 5727 6151 0 281 292 21 21 chrX 4534751 4534847 -158065083 - MER5B DNA MER1_type -22 156 61 209 342 118 56 chrX 4535022 4535183 -158064747 - MER5A DNA MER1_type -9 180 10 907 253 78 32 chrX 4535474 4535948 -158063982 - L1ME3 LINE L1 -2 6160 5665 27 29 0 0 chrX 4536007 4536041 -158063889 + AT_rich Low_complexity Low_complexity 1 34 0 225 300 0 12 chrX 4536044 4536124 -158063806 + CT-rich Low_complexity Low_complexity 1 79 0 512 255 75 45 chrX 4536180 4536447 -158063483 - L1MCc LINE L1 -3319 3622 3348 288 295 74 38 chrX 4536508 4536975 -158062955 - L1MCc LINE L1 -4600 2341 1808 41 48 0 0 chrX 4537083 4537145 -158062785 + AT_rich Low_complexity Low_complexity 1 62 0 333 348 105 20 chrX 4537156 4537507 -158062423 - L1MCc LINE L1 -4887 1536 1156 290 224 0 0 chrX 4538231 4538289 -158061641 - L1MCc LINE L1 -6347 76 19 305 277 22 7 chrX 4538368 4538505 -158061425 + (TA)n Simple_repeat Simple_repeat 1 139 0 2256 110 0 3 chrX 4538533 4538832 -158061098 - AluSx SINE Alu -14 298 1 311 377 45 36 chrX 4539086 4539423 -158060507 + L1MC4a LINE L1 5566 5905 -1903 1952 164 3 0 chrX 4539429 4539740 -158060190 - AluSx SINE Alu 0 312 1 272 321 0 0 chrX 4540512 4540593 -158059337 + MIR SINE MIR 89 169 -93 459 301 68 0 chrX 4542259 4542422 -158057508 - MLT1D LTR MaLR -264 241 68 1839 113 77 116 chrX 4542465 4542818 -158057112 + Charlie3 DNA MER1_type 1 2712 0 192 77 0 0 chrX 4544397 4544423 -158055507 + (TG)n Simple_repeat Simple_repeat 2 27 0 1525 169 10 60 chrX 4544423 4544724 -158055206 - AluJo SINE Alu -26 286 1 1361 240 116 7 chrX 4544782 4545215 -158054715 - MLT2B1 LTR ERVL -40 480 1 1582 182 30 23 chrX 4545480 4545782 -158054148 - AluJo SINE Alu -8 304 1 1414 236 159 14 chrX 4546138 4546579 -158053351 - MLT1D LTR MaLR 0 505 1 1843 153 10 7 chrX 4546883 4547183 -158052747 - AluSx SINE Alu -11 301 1 953 144 0 11 chrX 4547188 4547368 -158052562 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 396 230 11 6 chrX 4547372 4547550 -158052380 + CT-rich Low_complexity Low_complexity 2 180 0 235 264 50 16 chrX 4548239 4548360 -158051570 + (TGGG)n Simple_repeat Simple_repeat 2 126 0 * 493 251 34 17 chrX 4548272 4548447 -158051483 + G-rich Low_complexity Low_complexity 2 179 0 561 213 0 0 chrX 4548458 4548622 -158051308 + G-rich Low_complexity Low_complexity 1 164 0 205 338 0 0 chrX 4549389 4549457 -158050473 - MIR3 SINE MIR -28 180 113 201 321 46 30 chrX 4551037 4551168 -158048762 + MIR SINE MIR 3 135 -127 2490 195 38 24 chrX 4551221 4551755 -158048175 + L1MB4 LINE L1 5600 6140 -40 28 61 0 0 chrX 4551786 4551835 -158048095 + AT_rich Low_complexity Low_complexity 1 49 0 197 0 0 67 chrX 4552409 4552439 -158047491 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 27 29 0 0 chrX 4552576 4552610 -158047320 + GC_rich Low_complexity Low_complexity 1 34 0 273 98 0 0 chrX 4552850 4552891 -158047039 + (CA)n Simple_repeat Simple_repeat 1 41 0 231 238 19 9 chrX 4553050 4553155 -158046775 + (TA)n Simple_repeat Simple_repeat 2 107 0 516 273 61 6 chrX 4553263 4553428 -158046502 + REP3 LTR ERV 389 562 0 1303 187 84 15 chrX 4553709 4553830 -158046100 + AluJo SINE Alu 1 112 -200 270 0 0 0 chrX 4553830 4553860 -158046070 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1303 187 84 15 chrX 4553860 4554000 -158045930 + AluJo SINE Alu 112 280 -32 259 241 12 48 chrX 4554169 4554252 -158045678 + MLT1I LTR MaLR 292 371 -38 1690 172 29 10 chrX 4554256 4554564 -158045366 + L1MC1 LINE L1 6020 6333 0 287 216 57 34 chrX 4555187 4555275 -158044655 - LTR4 LTR ERV1 -500 96 7 * 587 203 138 91 chrX 4555259 4555551 -158044379 + LTR1B LTR ERV1 487 745 -81 1111 252 86 45 chrX 4555880 4556345 -158043585 + LTR1 LTR ERV1 2 485 -300 580 207 18 65 chrX 4556348 4556565 -158043365 - LTR4 LTR ERV1 0 596 390 280 260 21 62 chrX 4556859 4556955 -158042975 - LTR4 LTR ERV1 -479 117 26 226 255 0 0 chrX 4557563 4557610 -158042320 - L2 LINE L2 -251 3062 3016 436 253 171 82 chrX 4557730 4558133 -158041797 - MLT1H LTR MaLR 0 549 111 722 236 0 11 chrX 4558145 4558319 -158041611 + L1MB7 LINE L1 6005 6176 -8 233 265 39 128 chrX 4560727 4560961 -158038969 - Charlie2a DNA MER1_type -1909 953 741 2938 193 24 18 chrX 4561647 4562192 -158037738 - MER44D DNA MER2_type -1 604 2 512 240 16 8 chrX 4562252 4562373 -158037557 + AluSq SINE Alu 82 203 -110 863 153 0 36 chrX 4562558 4562695 -158037235 - FLAM_C SINE Alu -1 132 1 247 330 94 29 chrX 4562761 4563316 -158036614 + L1ME2 LINE L1 2110 2700 -3446 518 264 127 50 chrX 4563745 4564376 -158035554 + L1ME2 LINE L1 5261 5946 -218 571 263 21 35 chrX 4564483 4564844 -158035086 + L1ME1 LINE L1 5595 6038 -128 276 149 0 0 chrX 4564847 4564894 -158035036 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1031 146 0 0 chrX 4564914 4565065 -158034865 - AluSg/x SINE Alu -27 283 133 419 226 40 7 chrX 4565068 4565190 -158034740 + L1MA10 LINE L1 6181 6302 -10 799 126 0 14 chrX 4565479 4565622 -158034308 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 21 0 0 0 chrX 4567059 4567080 -158032850 + AT_rich Low_complexity Low_complexity 1 21 0 225 163 0 0 chrX 4567448 4567497 -158032433 + G-rich Low_complexity Low_complexity 1 49 0 204 97 0 0 chrX 4567645 4567676 -158032254 + (G)n Simple_repeat Simple_repeat 1 31 0 366 369 0 0 chrX 4567708 4567884 -158032046 + G-rich Low_complexity Low_complexity 1 176 0 289 292 4 8 chrX 4568788 4568959 -158030971 + C-rich Low_complexity Low_complexity 1 170 0 1363 159 44 63 chrX 4569115 4569492 -158030438 + L1PB4 LINE L1 5791 6155 -1 487 288 87 9 chrX 4570081 4570300 -158029630 - L1MB3 LINE L1 0 6183 5948 676 183 56 16 chrX 4571357 4571483 -158028447 + FLAM_A SINE Alu 2 132 -1 217 314 0 14 chrX 4571721 4571791 -158028139 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 183 129 0 0 chrX 4571803 4571834 -158028096 + (CATA)n Simple_repeat Simple_repeat 2 32 0 258 222 0 0 chrX 4572086 4572140 -158027790 - L1MA5 LINE L1 -198 6102 6049 482 79 13 0 chrX 4572925 4573001 -158026929 + (TC)n Simple_repeat Simple_repeat 1 77 0 347 344 0 6 chrX 4573003 4573211 -158026719 + C-rich Low_complexity Low_complexity 1 206 0 206 279 0 25 chrX 4573319 4573477 -158026453 + C-rich Low_complexity Low_complexity 6 159 0 198 0 0 0 chrX 4573717 4573739 -158026191 + (C)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chrX 4574266 4574290 -158025640 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chrX 4574846 4574870 -158025060 + GC_rich Low_complexity Low_complexity 1 24 0 863 136 76 27 chrX 4574971 4575155 -158024775 + AluSc SINE Alu 109 301 -8 369 166 31 151 chrX 4575310 4575466 -158024464 + MLT1D LTR MaLR 214 497 -8 284 290 54 65 chrX 4575476 4575662 -158024268 - L2 LINE L2 -1291 2023 1840 182 333 15 15 chrX 4575647 4575713 -158024217 + L2 LINE L2 2577 2642 -672 * 422 310 194 7 chrX 4575722 4575997 -158023933 + L2 LINE L2 2745 3070 -243 207 71 0 71 chrX 4576927 4576969 -158022961 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 486 257 69 58 chrX 4577330 4577591 -158022339 + MARNA DNA Mariner 316 579 -7 1440 128 88 51 chrX 4577853 4578149 -158021781 - MER44D DNA MER2_type -1 608 32 366 91 0 0 chrX 4578178 4578233 -158021697 + (TC)n Simple_repeat Simple_repeat 2 56 0 1645 184 0 17 chrX 4578817 4579111 -158020819 + AluJo SINE Alu 2 290 -22 796 176 0 0 chrX 4579111 4579230 -158020700 - AluJo/FLAM SINE Alu -191 121 3 318 313 6 22 chrX 4579415 4579594 -158020336 + CT-rich Low_complexity Low_complexity 4 179 0 360 337 0 27 chrX 4579607 4579791 -158020139 + C-rich Low_complexity Low_complexity 1 179 0 1530 188 17 17 chrX 4581066 4581359 -158018571 + AluJo SINE Alu 17 309 -3 2178 103 7 7 chrX 4581381 4581672 -158018258 - AluSq SINE Alu -21 292 2 1281 186 68 15 chrX 4581930 4582194 -158017736 + AluJo SINE Alu 1 278 -34 724 181 129 0 chrX 4582195 4582350 -158017580 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 4582350 4582385 -158017545 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 4582414 4582454 -158017476 + AT_rich Low_complexity Low_complexity 1 40 0 2161 129 0 0 chrX 4582911 4583213 -158016717 + AluSx SINE Alu 1 302 -10 186 43 0 0 chrX 4583239 4583262 -158016668 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 183 259 0 0 chrX 4584872 4584930 -158015000 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1004 323 56 37 chrX 4587050 4587617 -158012313 + L2 LINE L2 1050 1627 -1687 774 330 8 42 chrX 4587701 4588058 -158011872 + MLT1I LTR MaLR 63 407 -2 405 313 96 36 chrX 4588069 4588350 -158011580 + L2 LINE L2 1648 1945 -1369 1559 284 118 26 chrX 4588464 4589291 -158010639 + L2 LINE L2 1943 2693 -620 2534 99 51 17 chrX 4589291 4589643 -158010287 + THE1B LTR MaLR 1 364 0 1559 284 118 26 chrX 4589643 4589912 -158010018 + L2 LINE L2 2693 2936 -377 1447 191 10 37 chrX 4589912 4590211 -158009719 + AluJo SINE Alu 1 291 -21 1559 284 118 26 chrX 4590211 4590371 -158009559 + L2 LINE L2 2936 3313 0 3695 140 2 4 chrX 4591450 4592006 -158007924 + L1PA15 LINE L1 5611 6165 0 218 157 59 20 chrX 4592082 4592133 -158007797 + A-rich Low_complexity Low_complexity 5 57 0 2193 118 0 3 chrX 4593223 4593528 -158006402 + AluSg SINE Alu 1 304 -6 1845 157 0 4 chrX 4593545 4593819 -158006111 + AluJo SINE Alu 1 273 -39 22 56 0 0 chrX 4595687 4595723 -158004207 + AT_rich Low_complexity Low_complexity 1 36 0 2314 88 3 7 chrX 4595727 4596032 -158003898 + AluY SINE Alu 1 304 -7 954 185 0 51 chrX 4597181 4597359 -158002571 + AluJo SINE Alu 1 169 -143 1716 169 55 44 chrX 4597359 4597725 -158002205 - THE1C LTR MaLR 0 375 6 713 168 67 0 chrX 4597730 4597849 -158002081 + AluJo SINE Alu 165 291 -21 281 202 149 21 chrX 4599231 4599325 -158000605 + L1MB3 LINE L1 6077 6182 -1 510 163 92 0 chrX 4600460 4600558 -157999372 + L1MB3 LINE L1 6077 6183 0 180 365 29 19 chrX 4601310 4601414 -157998516 - MIR SINE MIR -50 212 108 212 229 0 0 chrX 4601542 4601590 -157998340 - MIR SINE MIR -66 142 95 226 250 0 0 chrX 4601779 4601823 -157998107 - L2 LINE L2 -12 3260 3217 2577 184 12 5 chrX 4602216 4602645 -157997285 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chrX 4603914 4603942 -157995988 + AT_rich Low_complexity Low_complexity 1 28 0 440 18 18 0 chrX 4603990 4604047 -157995883 + (TG)n Simple_repeat Simple_repeat 1 58 0 1403 188 73 4 chrX 4604047 4604308 -157995622 - AluJo SINE Alu -33 279 1 293 316 101 40 chrX 4604797 4605075 -157994855 + L2 LINE L2 3019 3313 0 2400 110 26 42 chrX 4605501 4605882 -157994048 + THE1C LTR MaLR 1 375 0 197 350 21 10 chrX 4606016 4606113 -157993817 + MIR SINE MIR 99 196 -66 322 326 144 8 chrX 4606124 4606388 -157993542 + L2 LINE L2 3013 3312 -1 245 250 26 40 chrX 4606379 4606455 -157993475 + MIR SINE MIR 188 262 0 * 1291 162 97 65 chrX 4607556 4607726 -157992204 - AluJo SINE Alu -11 301 117 1816 170 3 0 chrX 4607726 4608015 -157991915 + AluJb SINE Alu 1 290 -22 1291 162 97 65 chrX 4608015 4608134 -157991796 - AluJo SINE Alu -195 117 3 1799 171 0 16 chrX 4608974 4609279 -157990651 + AluJo SINE Alu 2 301 -11 2614 39 7 3 chrX 4609668 4609977 -157989953 - AluY SINE Alu -1 310 1 779 211 46 17 chrX 4610011 4610186 -157989744 + MSTD LTR MaLR 215 394 -2 415 326 136 33 chrX 4610409 4610952 -157988978 - L2 LINE L2 -833 2481 1883 821 191 99 47 chrX 4611322 4611663 -157988267 + MSTD LTR MaLR 3 396 0 1517 192 3 10 chrX 4613361 4613652 -157986278 - AluJo SINE Alu -23 289 1 367 218 20 30 chrX 4613902 4614003 -157985927 - MLT1A1 LTR MaLR -263 102 3 240 276 79 0 chrX 4614020 4614096 -157985834 - L2 LINE L2 -47 3266 3185 408 252 161 13 chrX 4614590 4614745 -157985185 + L1ME1 LINE L1 5355 5532 -634 391 252 85 77 chrX 4614749 4614781 -157985149 + L1ME1 LINE L1 5681 5711 -455 2246 63 47 20 chrX 4614781 4615081 -157984849 - L1PA11 LINE L1 0 6174 5867 391 252 85 77 chrX 4615081 4615296 -157984634 + L1ME1 LINE L1 5711 5927 -239 2300 115 29 3 chrX 4616097 4616445 -157983485 + L1MA3 LINE L1 5947 6303 -2 27 22 0 22 chrX 4616661 4616681 -157983249 + AT_rich Low_complexity Low_complexity 1 20 -24 2064 115 31 3 chrX 4616681 4616967 -157982963 - AluSg SINE Alu -16 294 1 27 22 0 22 chrX 4616967 4616991 -157982939 + AT_rich Low_complexity Low_complexity 20 44 0 32 43 0 0 chrX 4617033 4617079 -157982851 + AT_rich Low_complexity Low_complexity 1 46 0 214 152 55 18 chrX 4617082 4617247 -157982683 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 346 191 52 17 chrX 4617273 4617446 -157982484 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 237 166 70 0 chrX 4617457 4617614 -157982316 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 21 57 0 0 chrX 4617765 4617800 -157982130 + AT_rich Low_complexity Low_complexity 1 35 0 204 125 0 0 chrX 4617917 4617949 -157981981 + (GA)n Simple_repeat Simple_repeat 1 32 0 3525 86 27 5 chrX 4618422 4618865 -157981065 + MLT2A2 LTR ERVL 1 453 0 233 265 12 24 chrX 4618971 4619027 -157980903 + (CATATA)n Simple_repeat Simple_repeat 2 58 -25 2593 121 14 16 chrX 4619027 4619392 -157980538 + THE1B LTR MaLR 1 364 0 233 265 12 24 chrX 4619392 4619418 -157980512 + (CATATA)n Simple_repeat Simple_repeat 58 83 0 828 78 95 0 chrX 4621973 4621996 -157977934 - L1MA2 LINE L1 -6 6298 6279 201 74 0 0 chrX 4621996 4622023 -157977907 + (TA)n Simple_repeat Simple_repeat 1 27 0 828 78 95 0 chrX 4622023 4622115 -157977815 - L1MA2 LINE L1 -25 6279 6172 447 256 8 8 chrX 4622119 4622240 -157977690 + Charlie4a DNA MER1_type 14 134 -374 384 256 40 24 chrX 4622251 4622376 -157977554 + Charlie4a DNA MER1_type 209 335 -173 832 173 0 7 chrX 4622400 4622539 -157977391 - FLAM_C SINE Alu 0 143 6 295 257 44 37 chrX 4622556 4622692 -157977238 + Charlie4a DNA MER1_type 352 488 -20 1874 181 7 0 chrX 4622937 4623246 -157976684 + AluJb SINE Alu 1 311 -1 1248 155 17 26 chrX 4624687 4624919 -157975011 - AluJo SINE Alu -82 230 1 900 155 0 0 chrX 4624919 4625048 -157974882 - AluJb SINE Alu -17 295 167 985 137 0 10 chrX 4626158 4626406 -157973524 - AluJb SINE Alu -16 296 1 620 284 12 12 chrX 4626450 4626619 -157973311 + MER5B DNA MER1_type 4 172 -6 316 288 33 79 chrX 4626693 4626933 -157972997 - HAL1 LINE L1 0 2507 2279 1839 183 0 0 chrX 4626976 4627271 -157972659 - AluJb SINE Alu -17 295 1 866 297 82 35 chrX 4627592 4627916 -157972014 - HAL1 LINE L1 -711 1796 1434 2624 118 64 10 chrX 4627916 4628322 -157971608 + MSTA LTR MaLR 1 428 0 866 297 82 35 chrX 4628322 4628560 -157971370 - HAL1 LINE L1 -1073 1434 1208 2870 126 29 6 chrX 4629407 4629885 -157970045 + MER39B LTR ERV1 1 489 -164 5047 129 15 44 chrX 4629894 4629923 -157970007 + L1PA16 LINE L1 5303 5331 -835 1883 128 14 14 chrX 4629923 4630246 -157969684 + AluSx SINE Alu 1 323 0 5047 129 15 44 chrX 4630246 4631086 -157968844 + L1PA16 LINE L1 5331 6148 -18 790 174 38 38 chrX 4631086 4631270 -157968660 + MER39B LTR ERV1 470 653 0 2117 164 96 19 chrX 4631757 4632173 -157967757 + LTR29 LTR ERV1 175 622 0 710 184 0 70 chrX 4632184 4632342 -157967588 + LTR29-int LTR ERV1 10 156 -6175 335 191 16 0 chrX 4632342 4632405 -157967525 + LTR29 LTR ERV1 559 622 0 578 261 44 54 chrX 4632440 4632533 -157967397 + MIR SINE MIR 61 153 -109 1658 205 84 70 chrX 4632533 4633030 -157966900 + MLT1D LTR MaLR 1 504 -1 578 261 44 54 chrX 4633030 4633139 -157966791 + MIR SINE MIR 153 261 -1 2245 112 0 22 chrX 4633300 4633613 -157966317 - AluSx SINE Alu -6 306 1 2325 143 28 3 chrX 4633921 4634277 -157965653 + MLT1A1 LTR MaLR 1 365 0 1363 172 62 44 chrX 4634969 4635242 -157964688 + AluJo SINE Alu 1 278 -34 270 0 0 0 chrX 4635247 4635277 -157964653 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2415 138 40 8 chrX 4636364 4636763 -157963167 + MSTA LTR MaLR 17 428 0 29 0 0 0 chrX 4637537 4637566 -157962364 + AT_rich Low_complexity Low_complexity 1 29 0 1897 152 176 16 chrX 4637573 4637942 -157961988 - MSTC LTR MaLR 0 428 1 1398 190 19 16 chrX 4638653 4639077 -157960853 + MLT1D LTR MaLR 7 485 -20 2414 72 3 3 chrX 4639413 4639719 -157960211 + AluY SINE Alu 1 306 -5 579 295 65 10 chrX 4642310 4642510 -157957420 - MER58A DNA MER1_type -9 215 5 1306 54 18 6 chrX 4643124 4643292 -157956638 - AluY SINE Alu -53 258 89 435 188 12 0 chrX 4643417 4643497 -157956433 - AluSg/x SINE Alu -57 253 173 227 135 0 0 chrX 4643497 4643534 -157956396 - Alu SINE Alu -90 213 177 * 235 158 0 0 chrX 4643526 4643564 -157956366 - Alu SINE Alu -80 220 183 1606 94 0 0 chrX 4643564 4643766 -157956164 - AluSx SINE Alu -90 222 21 259 285 183 38 chrX 4644080 4644452 -157955478 + L2 LINE L2 943 1368 -1946 259 210 97 0 chrX 4644595 4644657 -157955273 + L2 LINE L2 1934 2001 -1313 1615 318 127 20 chrX 4644980 4646182 -157953748 + L2 LINE L2 1975 3311 -2 387 288 159 0 chrX 4646541 4646704 -157953226 - Charlie8 DNA MER1_type -2137 280 92 683 195 57 63 chrX 4646983 4647142 -157952788 + AluJb SINE Alu 127 284 -28 299 275 0 44 chrX 4647245 4647336 -157952594 + L2 LINE L2 3185 3271 -1 479 266 34 17 chrX 4647436 4647613 -157952317 - MIR SINE MIR -31 231 52 21 36 0 0 chrX 4648063 4648091 -157951839 + AT_rich Low_complexity Low_complexity 1 28 0 336 102 0 0 chrX 4648091 4648140 -157951790 + (CA)n Simple_repeat Simple_repeat 2 50 0 2216 115 16 0 chrX 4649188 4649492 -157950438 - AluSx SINE Alu -2 310 2 26 0 0 0 chrX 4649631 4649657 -157950273 + AT_rich Low_complexity Low_complexity 1 26 0 441 342 76 49 chrX 4649935 4650343 -157949587 + HAL1b LINE L1 115 1617 -816 208 238 8 57 chrX 4650795 4650832 -157949098 + A-rich Low_complexity Low_complexity 4 41 -78 25 0 0 0 chrX 4650832 4650857 -157949073 + AT_rich Low_complexity Low_complexity 1 25 0 208 238 8 57 chrX 4650857 4650917 -157949013 + A-rich Low_complexity Low_complexity 41 119 0 28 48 0 0 chrX 4651001 4651043 -157948887 + AT_rich Low_complexity Low_complexity 1 42 0 244 155 42 28 chrX 4651188 4651259 -157948671 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 2039 118 0 0 chrX 4651359 4651641 -157948289 + AluSx SINE Alu 1 280 -32 226 207 0 35 chrX 4651751 4651809 -157948121 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 499 275 39 30 chrX 4652049 4652387 -157947543 + L1M4 LINE L1 2940 3280 -2866 21 89 0 0 chrX 4652468 4652524 -157947406 + AT_rich Low_complexity Low_complexity 1 56 0 471 340 70 85 chrX 4652596 4653537 -157946393 + L1M4 LINE L1 3440 4372 -1774 337 242 31 39 chrX 4654014 4654142 -157945788 + LTR33 LTR ERVL 94 220 -301 2199 109 10 0 chrX 4654294 4654587 -157945343 + AluSg SINE Alu 1 296 -14 249 277 99 21 chrX 4654632 4654773 -157945157 + L1M4 LINE L1 4942 5093 -1053 527 176 7 110 chrX 4654942 4655078 -157944852 - FLAM_A SINE Alu -11 122 1 235 293 38 63 chrX 4655392 4655513 -157944417 - L1ME LINE L1 -260 5861 5747 1500 141 41 19 chrX 4655513 4655783 -157944147 + L1PA16 LINE L1 5881 6156 -10 235 293 38 63 chrX 4655783 4655900 -157944030 - L1ME LINE L1 -374 5747 5629 1816 163 3 16 chrX 4656844 4657150 -157942780 - AluJo SINE Alu -10 302 1 672 221 67 39 chrX 4658860 4659068 -157940862 - MER20 DNA MER1_type -5 214 1 740 162 54 18 chrX 4659117 4659284 -157940646 - MER20 DNA MER1_type 0 219 47 977 220 23 19 chrX 4659356 4659570 -157940360 - MER20 DNA MER1_type -4 215 1 197 266 65 81 chrX 4659810 4659934 -157939996 - L2 LINE L2 -868 2446 2325 783 192 0 0 chrX 4660026 4660203 -157939727 + (CAT)n Simple_repeat Simple_repeat 2 178 0 389 286 56 16 chrX 4660563 4660689 -157939241 - MER5A DNA MER1_type -11 178 48 946 237 27 5 chrX 4660799 4661018 -157938912 - MER58A DNA MER1_type 0 224 1 224 292 0 15 chrX 4661520 4661585 -157938345 + L2 LINE L2 3250 3313 0 716 121 0 121 chrX 4663033 4663182 -157936748 - FRAM SINE Alu -22 154 24 1501 262 82 35 chrX 4663221 4663733 -157936197 - MLT1E LTR MaLR -3 590 55 1299 242 77 41 chrX 4663979 4664421 -157935509 - MLT1C LTR MaLR -9 458 1 25 31 0 0 chrX 4665108 4665140 -157934790 + AT_rich Low_complexity Low_complexity 1 32 0 216 143 0 0 chrX 4665669 4665711 -157934219 + (TG)n Simple_repeat Simple_repeat 1 42 0 515 273 22 57 chrX 4665891 4666044 -157933886 - MER20 DNA MER1_type 0 219 75 4128 147 1 0 chrX 4666044 4666710 -157933220 - L1PB4 LINE L1 -12 6144 5478 515 273 22 57 chrX 4666710 4666783 -157933147 - MER20 DNA MER1_type -144 75 1 21 0 0 0 chrX 4667834 4667855 -157932075 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chrX 4668349 4668381 -157931549 + (TG)n Simple_repeat Simple_repeat 1 32 0 1361 240 85 9 chrX 4668525 4668959 -157930971 + MLT1C LTR MaLR 1 467 0 23 54 0 0 chrX 4668972 4669009 -157930921 + AT_rich Low_complexity Low_complexity 1 37 0 364 220 11 0 chrX 4669019 4669110 -157930820 - L1MA9 LINE L1 -34 6278 6187 230 200 77 15 chrX 4669337 4669402 -157930528 + MIR3 SINE MIR 115 183 -25 184 293 104 9 chrX 4670039 4670145 -157929785 - L2 LINE L2 -21 3251 3136 643 229 133 0 chrX 4670631 4670797 -157929133 - MER5A DNA MER1_type -1 188 1 213 238 0 0 chrX 4670991 4671033 -157928897 - L2 LINE L2 -11 3302 3261 199 354 77 39 chrX 4671293 4671423 -157928507 - L2 LINE L2 -1 3271 3137 839 273 83 29 chrX 4671540 4672070 -157927860 - MLT1F1 LTR MaLR 0 567 2 1997 152 10 0 chrX 4672795 4673098 -157926832 + AluJb SINE Alu 5 310 -2 351 206 109 91 chrX 4674306 4674426 -157925504 + MIR SINE MIR 67 192 -70 1790 174 43 0 chrX 4674426 4674549 -157925381 + AluJo SINE Alu 1 117 -195 183 42 0 0 chrX 4674549 4674573 -157925357 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1790 174 43 0 chrX 4674573 4674748 -157925182 + AluJo SINE Alu 117 312 0 351 206 109 91 chrX 4674748 4674802 -157925128 + MIR SINE MIR 192 244 -18 186 397 65 9 chrX 4674878 4675092 -157924838 + L2 LINE L2 2750 2975 -339 2044 131 3 3 chrX 4677347 4677644 -157922286 - AluJo SINE Alu -15 297 1 1511 181 0 36 chrX 4677854 4678131 -157921799 + AluJb SINE Alu 1 267 -45 2535 46 0 3 chrX 4678844 4679147 -157920783 - AluY SINE Alu 0 311 10 1455 201 7 31 chrX 4679329 4679622 -157920308 + AluJo SINE Alu 1 286 -26 28 29 0 0 chrX 4679623 4679658 -157920272 + AT_rich Low_complexity Low_complexity 1 35 0 483 314 53 0 chrX 4680068 4680237 -157919693 + MIR SINE MIR 37 214 -48 1059 99 0 0 chrX 4680286 4680438 -157919492 + L1PA8 LINE L1 6020 6171 -1 394 160 13 0 chrX 4681153 4681228 -157918702 - MADE1 DNA Mariner -4 76 1 1061 151 0 6 chrX 4681238 4681397 -157918533 - AluJb SINE Alu -25 287 130 2276 61 41 0 chrX 4681992 4682286 -157917644 - AluY SINE Alu -5 306 1 181 245 80 123 chrX 4682875 4682998 -157916932 + MIR SINE MIR 71 187 -75 1986 143 10 0 chrX 4682998 4683291 -157916639 + AluJo SINE Alu 1 296 -16 181 245 80 123 chrX 4683291 4683330 -157916600 + MIR SINE MIR 187 226 -36 2084 130 0 0 chrX 4683554 4683838 -157916092 - AluSx SINE Alu -17 295 12 1152 105 0 0 chrX 4683849 4683992 -157915938 - AluSq/x SINE Alu -169 144 2 426 20 0 0 chrX 4687669 4687720 -157912210 + (CA)n Simple_repeat Simple_repeat 1 51 0 1635 193 3 3 chrX 4687794 4688090 -157911840 - AluJb SINE Alu -8 304 9 2147 111 23 7 chrX 4688762 4689069 -157910861 + AluSx SINE Alu 1 312 0 307 306 175 22 chrX 4690338 4690521 -157909409 - MIR SINE MIR -7 255 45 733 212 20 0 chrX 4690927 4691073 -157908857 + AluJo SINE Alu 3 151 -161 733 169 0 0 chrX 4691202 4691326 -157908604 + AluJo SINE Alu 156 279 -33 22 35 0 0 chrX 4691350 4691379 -157908551 + AT_rich Low_complexity Low_complexity 1 29 0 1018 197 96 60 chrX 4691620 4692046 -157907884 - MLT1D LTR MaLR -4 501 73 214 280 20 0 chrX 4692242 4692292 -157907638 + L2 LINE L2 3248 3298 -15 1778 183 27 0 chrX 4693062 4693362 -157906568 + AluJo SINE Alu 1 308 -4 2052 122 0 17 chrX 4694013 4694309 -157905621 - AluSx SINE Alu -17 295 5 2419 92 0 0 chrX 4694882 4695187 -157904743 - AluSc SINE Alu -4 305 1 24 0 0 0 chrX 4697239 4697263 -157902667 + AT_rich Low_complexity Low_complexity 1 24 0 1545 172 52 7 chrX 4698320 4698610 -157901320 - AluJo SINE Alu -8 304 2 239 309 12 12 chrX 4698620 4698701 -157901229 + L2 LINE L2 3227 3307 -6 211 196 87 0 chrX 4699030 4699076 -157900854 + MIR SINE MIR 92 141 -67 193 235 78 0 chrX 4699993 4700044 -157899886 + L2 LINE L2 3201 3255 -17 833 261 23 5 chrX 4700403 4700618 -157899312 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chrX 4701045 4701066 -157898864 + AT_rich Low_complexity Low_complexity 1 21 0 4440 129 13 16 chrX 4702183 4702602 -157897328 + L1PA16 LINE L1 5408 5826 -340 2599 48 3 0 chrX 4702602 4702912 -157897018 + AluY SINE Alu 1 311 0 4440 129 13 16 chrX 4702912 4703244 -157896686 + L1PA16 LINE L1 5826 6157 -9 272 338 15 15 chrX 4703692 4703825 -157896105 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 364 249 106 53 chrX 4703962 4704151 -157895779 - L1ME LINE L1 -415 5706 5508 237 83 0 0 chrX 4704201 4704237 -157895693 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 260 296 163 52 chrX 4705241 4705376 -157894554 + L2 LINE L2 3123 3272 0 203 317 0 0 chrX 4705842 4705902 -157894028 + L2 LINE L2 3249 3308 -5 211 271 122 19 chrX 4706259 4706366 -157893564 + MIR SINE MIR 28 145 -63 23 86 0 0 chrX 4706643 4706701 -157893229 + AT_rich Low_complexity Low_complexity 1 58 0 952 193 14 40 chrX 4707134 4707357 -157892573 + MER20 DNA MER1_type 3 219 0 183 222 0 0 chrX 4707379 4707424 -157892506 + GA-rich Low_complexity Low_complexity 4 48 0 * 286 130 0 58 chrX 4707417 4707486 -157892444 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 204 284 14 14 chrX 4707496 4707570 -157892360 + GA-rich Low_complexity Low_complexity 2 75 0 190 340 47 0 chrX 4707599 4707705 -157892225 - MIR SINE MIR -62 200 90 272 220 31 6 chrX 4708274 4708436 -157891494 + CT-rich Low_complexity Low_complexity 1 166 0 412 191 9 18 chrX 4708646 4708756 -157891174 + CT-rich Low_complexity Low_complexity 4 112 0 351 282 40 24 chrX 4709181 4709305 -157890625 + L1MEd LINE L1 1004 1129 -5401 440 282 74 45 chrX 4709389 4709756 -157890174 + L1MEd LINE L1 1293 1649 -4881 231 272 39 19 chrX 4709921 4710024 -157889906 + L1MEd LINE L1 1865 1969 -4571 396 295 48 39 chrX 4710855 4711100 -157888830 + L1MEd LINE L1 3336 3577 -2963 253 293 75 0 chrX 4711236 4711342 -157888588 + MER81 DNA DNA 1 114 0 462 36 0 0 chrX 4711813 4711869 -157888061 + (TG)n Simple_repeat Simple_repeat 2 57 0 676 222 116 25 chrX 4712375 4712573 -157887357 + MER20 DNA MER1_type 4 219 0 270 0 0 0 chrX 4713665 4713695 -157886235 + (TG)n Simple_repeat Simple_repeat 2 31 0 451 276 63 9 chrX 4713731 4713952 -157885978 - L1M4 LINE L1 -3597 2549 2317 1669 144 16 53 chrX 4714730 4715050 -157884880 + AluJo SINE Alu 5 312 0 589 214 231 6 chrX 4715662 4715835 -157884095 - MER20 DNA MER1_type -1 218 7 286 354 16 8 chrX 4715838 4715965 -157883965 + L2 LINE L2 3186 3313 0 228 190 17 52 chrX 4716326 4716384 -157883546 + L2 LINE L2 3257 3312 -1 3488 103 16 4 chrX 4716584 4717089 -157882841 - MER9 LTR ERVK 0 511 1 227 245 187 36 chrX 4717440 4717579 -157882351 - L2 LINE L2 0 3313 3154 22 56 0 0 chrX 4717766 4717802 -157882128 + AT_rich Low_complexity Low_complexity 1 36 0 198 167 0 0 chrX 4717943 4717979 -157881951 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1465 143 17 28 chrX 4717988 4718041 -157881889 + MLT1A1 LTR MaLR 1 53 -321 4171 99 9 41 chrX 4718041 4718533 -157881397 + L1MA2 LINE L1 5649 6115 -189 2368 78 0 3 chrX 4718533 4718828 -157881102 - AluY SINE Alu -17 294 1 4171 99 9 41 chrX 4718828 4719013 -157880917 + L1MA2 LINE L1 6115 6304 0 1465 143 17 28 chrX 4719013 4719270 -157880660 + MLT1A1 LTR MaLR 53 292 -82 529 170 7 7 chrX 4719354 4719501 -157880429 + (CATA)n Simple_repeat Simple_repeat 2 148 0 210 167 64 26 chrX 4719502 4719580 -157880350 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 214 222 32 16 chrX 4720699 4720762 -157879168 + (TG)n Simple_repeat Simple_repeat 1 64 0 180 0 0 0 chrX 4721246 4721266 -157878664 + (TC)n Simple_repeat Simple_repeat 2 21 0 1832 136 0 0 chrX 4721785 4722036 -157877894 - AluSx SINE Alu -18 294 44 653 228 91 9 chrX 4722770 4722989 -157876941 - MER46C DNA MER2_type -101 237 1 1781 147 6 26 chrX 4723176 4723516 -157876414 - L1MC1 LINE L1 -260 6073 5741 2356 179 7 2 chrX 4724261 4724718 -157875212 - L1PA16 LINE L1 0 6166 5708 24 0 0 0 chrX 4725049 4725073 -157874857 + AT_rich Low_complexity Low_complexity 1 24 0 1795 146 28 17 chrX 4725111 4725222 -157874708 + AluJb SINE Alu 11 119 -193 207 0 0 0 chrX 4725222 4725245 -157874685 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1795 146 28 17 chrX 4725245 4725421 -157874509 + AluJb SINE Alu 119 301 -11 216 390 20 30 chrX 4725496 4725596 -157874334 + L2 LINE L2 2979 3077 -195 1707 185 3 19 chrX 4725698 4726006 -157873924 + AluJo SINE Alu 1 303 -9 21 0 0 0 chrX 4727260 4727281 -157872649 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chrX 4727720 4727754 -157872176 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 1208 163 154 86 chrX 4727922 4728175 -157871755 + MLT1A1 LTR MaLR 4 287 -78 1625 192 0 24 chrX 4728175 4728466 -157871464 + AluJo SINE Alu 1 284 -28 1208 163 154 86 chrX 4728466 4728549 -157871381 + MLT1A1 LTR MaLR 287 363 -2 396 227 13 53 chrX 4728877 4729027 -157870903 + L1PA16 LINE L1 6007 6150 -16 918 178 11 0 chrX 4729097 4729282 -157870648 + L1MC3 LINE L1 6951 7137 -648 1307 96 0 11 chrX 4729288 4729466 -157870464 - AluSg/x SINE Alu 0 312 137 2383 211 52 11 chrX 4729466 4730097 -157869833 + L1MC3 LINE L1 7129 7785 0 2138 123 3 16 chrX 4730523 4730839 -157869091 - AluSx SINE Alu 0 312 1 200 205 0 0 chrX 4731441 4731480 -157868450 + (CATG)n Simple_repeat Simple_repeat 2 40 0 189 195 0 0 chrX 4731487 4731528 -157868402 + (TG)n Simple_repeat Simple_repeat 2 42 0 343 419 16 0 chrX 4732566 4732750 -157867180 + L3 LINE CR1 1380 1566 -11 1094 15 8 0 chrX 4733282 4733413 -157866517 - L1PA5 LINE L1 0 6154 6023 7283 41 0 0 chrX 4733448 4734639 -157865291 - L1PA4 LINE L1 -3 6152 4962 459 0 0 0 chrX 4735124 4735175 -157864755 + (CA)n Simple_repeat Simple_repeat 2 52 0 180 0 0 0 chrX 4735174 4735194 -157864736 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 251 219 41 41 chrX 4738290 4738363 -157861567 + LTR16C LTR ERVL 418 490 -1 1585 182 10 40 chrX 4738816 4739113 -157860817 + AluJo SINE Alu 1 288 -24 2042 222 13 33 chrX 4740121 4740643 -157859287 - MLT1A1-int LTR MaLR -1223 512 1 1790 169 11 55 chrX 4740643 4741022 -157858908 - MLT1A1 LTR MaLR 0 365 4 916 9 0 9 chrX 4742477 4742652 -157857278 + AluY SINE Alu 172 345 0 247 290 0 0 chrX 4746566 4746635 -157853295 + CT-rich Low_complexity Low_complexity 2 70 0 272 48 24 0 chrX 4746637 4746679 -157853251 + (CA)n Simple_repeat Simple_repeat 2 44 0 296 149 53 9 chrX 4747396 4747510 -157852420 + (TA)n Simple_repeat Simple_repeat 2 120 0 480 89 0 0 chrX 4748960 4749039 -157850891 + (GA)n Simple_repeat Simple_repeat 2 80 0 1798 140 3 40 chrX 4749103 4749403 -157850527 + AluJo SINE Alu 6 294 -18 1243 172 4 0 chrX 4750015 4750248 -157849682 - L1MA3 LINE L1 -1 6304 6071 1628 186 7 17 chrX 4750248 4750543 -157849387 - AluJo SINE Alu -20 292 1 600 176 26 46 chrX 4750813 4750966 -157848964 + MLT2C1 LTR ERVL 193 342 -55 455 308 108 29 chrX 4751202 4751517 -157848413 + L2 LINE L2 1552 1891 -1423 1446 181 61 3 chrX 4751782 4752108 -157847822 + MLT1A1 LTR MaLR 21 365 0 881 263 64 0 chrX 4753154 4753451 -157846479 - MER33 DNA MER1_type -8 316 1 468 291 103 56 chrX 4754444 4754912 -157845018 + MLT1H1 LTR MaLR 66 555 0 4365 118 3 6 chrX 4756289 4756948 -157842982 + L1PA13 LINE L1 5496 6152 -11 679 258 5 21 chrX 4757371 4757561 -157842369 + MER20 DNA MER1_type 31 217 -2 1167 107 31 0 chrX 4757761 4757957 -157841973 - L1PA13 LINE L1 -69 6094 5893 291 302 101 27 chrX 4758655 4758804 -157841126 - MIR SINE MIR -71 191 32 1589 197 9 22 chrX 4758949 4759264 -157840666 - AluJo SINE Alu -1 311 1 1053 231 73 105 chrX 4760107 4760752 -157839178 - MLT1E2 LTR MaLR 0 626 1 258 156 0 0 chrX 4760905 4760950 -157838980 + C-rich Low_complexity Low_complexity 1 45 0 1522 152 134 0 chrX 4760950 4761219 -157838711 - AluSx SINE Alu -6 306 2 1843 183 0 3 chrX 4761344 4761656 -157838274 - AluJo SINE Alu -1 311 1 468 0 0 0 chrX 4762396 4762448 -157837482 + (CA)n Simple_repeat Simple_repeat 2 53 0 1747 163 6 41 chrX 4762474 4762794 -157837136 - AluJo SINE Alu -3 309 1 186 171 0 0 chrX 4764225 4764266 -157835664 + (TG)n Simple_repeat Simple_repeat 2 42 0 369 75 0 0 chrX 4764634 4764687 -157835243 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chrX 4764765 4764787 -157835143 + AT_rich Low_complexity Low_complexity 1 22 0 202 304 14 0 chrX 4765544 4765613 -157834317 + (CCCGAA)n Simple_repeat Simple_repeat 6 75 0 248 297 17 114 chrX 4765894 4766069 -157833861 - L2 LINE L2 -5 3308 3151 1667 139 12 8 chrX 4766282 4766540 -157833390 + AluJo SINE Alu 34 292 -20 297 317 96 28 chrX 4767742 4768136 -157831794 - L1ME3A LINE L1 -229 5941 5521 228 267 56 11 chrX 4768166 4768256 -157831674 - L1ME3A LINE L1 -2026 4120 4027 308 331 158 19 chrX 4768293 4768716 -157831214 - L1ME3A LINE L1 -2157 3989 3508 633 266 0 33 chrX 4768882 4769066 -157830864 - MLT1E2 LTR MaLR -18 608 431 1295 140 4 44 chrX 4769344 4769594 -157830336 + L1MA9 LINE L1 5789 6028 -284 423 342 16 0 chrX 4770517 4770710 -157829220 - HAL1 LINE L1 -921 1586 1391 299 358 22 17 chrX 4773112 4773291 -157826639 - MER5A DNA MER1_type -9 180 1 975 215 51 78 chrX 4773492 4773947 -157825983 + MER39 LTR ERV1 68 565 0 213 121 0 0 chrX 4774082 4774115 -157825815 + (TA)n Simple_repeat Simple_repeat 2 34 0 2014 94 33 14 chrX 4774163 4774438 -157825492 - AluSx SINE Alu -32 280 1 23 33 0 0 chrX 4774477 4774507 -157825423 + AT_rich Low_complexity Low_complexity 1 30 0 883 144 0 8 chrX 4774636 4774768 -157825162 + FLAM_A SINE Alu 2 132 -1 184 365 50 25 chrX 4775686 4775845 -157824085 - L2 LINE L2 -844 2470 2308 183 80 0 0 chrX 4776561 4776586 -157823344 + (CATA)n Simple_repeat Simple_repeat 3 27 0 434 33 17 0 chrX 4776636 4776696 -157823234 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 330 26 0 0 chrX 4776792 4776831 -157823099 + (TG)n Simple_repeat Simple_repeat 1 39 0 560 278 90 75 chrX 4776896 4777261 -157822669 + L1MC5 LINE L1 6820 7193 -768 2129 145 24 19 chrX 4777261 4777634 -157822296 - THE1C LTR MaLR 0 375 1 560 278 90 75 chrX 4777634 4777656 -157822274 + L1MC5 LINE L1 7193 7213 -748 816 65 0 0 chrX 4777683 4777790 -157822140 + (TA)n Simple_repeat Simple_repeat 1 107 0 208 310 17 0 chrX 4778675 4778733 -157821197 + MIR SINE MIR 30 88 -120 218 320 10 31 chrX 4779717 4779814 -157820116 + L2 LINE L2 3173 3267 -5 2256 90 7 0 chrX 4780484 4780784 -157819146 - AluY SINE Alu -9 302 1 184 250 19 0 chrX 4781035 4781087 -157818843 + L2 LINE L2 1703 1755 -1559 309 89 0 0 chrX 4782218 4782263 -157817667 + (TG)n Simple_repeat Simple_repeat 1 45 0 1269 161 0 18 chrX 4782379 4782603 -157817327 - AluJo SINE Alu -52 260 41 354 143 0 0 chrX 4782710 4782773 -157817157 + (TG)n Simple_repeat Simple_repeat 2 64 0 775 130 0 9 chrX 4782858 4782973 -157816957 + FRAM SINE Alu 42 155 -21 236 191 106 21 chrX 4783215 4783309 -157816621 + L1MC5 LINE L1 7452 7553 -408 2124 122 3 0 chrX 4784453 4784748 -157815182 + AluSx SINE Alu 1 296 -16 2174 243 75 13 chrX 4785363 4786128 -157813802 + L1MC3 LINE L1 6974 7785 0 766 158 8 0 chrX 4787104 4787231 -157812699 + FLAM_C SINE Alu 2 129 -4 2329 84 7 0 chrX 4787758 4788054 -157811876 + AluSp SINE Alu 1 298 -15 341 262 68 0 chrX 4788060 4788163 -157811767 + MIR3 SINE MIR 94 203 -5 2078 107 57 0 chrX 4788368 4788648 -157811282 - AluSx SINE Alu -14 298 3 1400 199 34 38 chrX 4789281 4789572 -157810358 - AluJo SINE Alu -22 290 1 185 180 20 0 chrX 4789675 4789725 -157810205 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chrX 4789860 4789888 -157810042 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrX 4790965 4791000 -157808930 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 224 30 0 chrX 4791502 4791569 -157808361 + (TA)n Simple_repeat Simple_repeat 2 70 0 309 183 0 0 chrX 4791606 4791666 -157808264 + (TA)n Simple_repeat Simple_repeat 1 60 0 929 158 0 16 chrX 4791794 4791977 -157807953 + CT-rich Low_complexity Low_complexity 1 180 0 844 168 6 6 chrX 4791996 4792175 -157807755 + CT-rich Low_complexity Low_complexity 1 179 0 240 318 68 11 chrX 4793334 4793422 -157806508 - L2 LINE L2 -291 2981 2889 23 33 0 0 chrX 4794067 4794097 -157805833 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chrX 4795235 4795279 -157804651 + AT_rich Low_complexity Low_complexity 1 44 0 2057 126 7 0 chrX 4795371 4795656 -157804274 + AluSx SINE Alu 1 287 -25 219 114 0 0 chrX 4796401 4796436 -157803494 + (TG)n Simple_repeat Simple_repeat 2 36 0 1869 243 50 24 chrX 4796454 4797157 -157802773 - L1M4 LINE L1 -1304 4842 4122 340 295 18 36 chrX 4797685 4797797 -157802133 - L1MC4 LINE L1 -1319 6723 6614 1636 249 96 41 chrX 4797800 4798012 -157801918 - MLT2F LTR ERVL -44 619 420 1834 190 22 3 chrX 4798012 4798370 -157801560 + MLT1A1 LTR MaLR 1 365 0 1636 249 96 41 chrX 4798370 4798740 -157801190 - MLT2F LTR ERVL -243 420 5 542 299 19 52 chrX 4799687 4799813 -157800117 - MIR SINE MIR -22 240 122 2326 93 0 13 chrX 4799813 4800123 -157799807 + AluSc SINE Alu 1 306 -3 542 299 19 52 chrX 4800123 4800207 -157799723 - MIR SINE MIR -140 122 37 230 226 139 26 chrX 4800444 4800559 -157799371 + L1MEc LINE L1 44 171 -6225 978 246 139 3 chrX 4800804 4801121 -157798809 - MLT1A1 LTR MaLR -5 360 1 2397 113 52 0 chrX 4801586 4801932 -157797998 - THE1B LTR MaLR 0 364 1 1679 180 34 55 chrX 4802145 4802583 -157797347 + L1MC3 LINE L1 6673 7101 -684 1825 118 33 13 chrX 4802607 4802911 -157797019 + MSTA LTR MaLR 118 427 -1 1210 137 49 0 chrX 4802912 4803116 -157796814 + L1MC3 LINE L1 7099 7312 -473 1719 151 3 34 chrX 4803450 4803748 -157796182 + AluJb SINE Alu 3 291 -21 222 132 59 29 chrX 4803757 4803825 -157796105 + (TA)n Simple_repeat Simple_repeat 1 70 0 2260 73 39 3 chrX 4803836 4804122 -157795808 + AluSc SINE Alu 1 296 -13 1538 194 18 7 chrX 4804155 4804438 -157795492 + AluJo SINE Alu 1 286 -26 390 91 0 0 chrX 4804439 4804494 -157795436 + (CA)n Simple_repeat Simple_repeat 2 56 0 2001 98 42 0 chrX 4804527 4804812 -157795118 - AluSq SINE Alu -16 297 1 2040 155 0 0 chrX 4804820 4805116 -157794814 - AluSx SINE Alu -16 296 1 912 304 43 11 chrX 4805502 4805778 -157794152 + MLT1E LTR MaLR 280 564 -29 1222 204 5 14 chrX 4806382 4806603 -157793327 - MER20 DNA MER1_type 0 219 1 228 256 61 12 chrX 4806747 4806829 -157793101 - MER20B DNA MER1_type -633 150 65 366 23 0 0 chrX 4807171 4807214 -157792716 + (TG)n Simple_repeat Simple_repeat 1 43 0 2029 152 0 0 chrX 4807301 4807610 -157792320 - AluSx SINE Alu -2 310 2 414 161 35 0 chrX 4807617 4807704 -157792226 - L1MB3 LINE L1 0 6183 6094 294 125 0 0 chrX 4808298 4808346 -157791584 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chrX 4808349 4808388 -157791542 + (CA)n Simple_repeat Simple_repeat 1 39 0 4109 26 11 0 chrX 4808831 4809298 -157790632 - L1PA4 LINE L1 -3 6152 5681 2019 134 7 16 chrX 4809464 4809771 -157790159 - AluSx SINE Alu -7 305 2 1960 156 0 9 chrX 4810409 4810724 -157789206 - AluSx SINE Alu 0 312 1 210 71 0 0 chrX 4810853 4810881 -157789049 + (GA)n Simple_repeat Simple_repeat 2 29 0 304 289 68 55 chrX 4811326 4811548 -157788382 + MER106B DNA MER1_type 7 1058 -1 1962 150 0 3 chrX 4811716 4812022 -157787908 + AluJo SINE Alu 1 305 -7 1276 284 26 7 chrX 4812089 4812512 -157787418 + MER63B DNA MER1_type 6 436 0 1356 188 12 0 chrX 4812988 4813370 -157786560 + L1P5 LINE L1 5096 5480 -676 1698 168 46 7 chrX 4814797 4815082 -157784848 + AluJo SINE Alu 1 296 -16 1616 190 3 3 chrX 4816855 4817144 -157782786 - AluJb SINE Alu -23 289 1 214 143 32 16 chrX 4817952 4818015 -157781915 + CT-rich Low_complexity Low_complexity 1 64 0 1648 141 0 77 chrX 4818029 4818346 -157781584 - AluJo SINE Alu 0 450 165 2024 118 40 0 chrX 4818346 4818642 -157781288 - AluSq SINE Alu -5 308 1 1648 141 0 77 chrX 4818642 4818784 -157781146 - AluJo SINE Alu -285 165 14 834 236 75 30 chrX 4818952 4819247 -157780683 + MER58 DNA MER1_type 12 2420 0 2604 173 24 4 chrX 4821224 4821676 -157778254 - L1PA16 LINE L1 0 6166 5706 201 74 0 0 chrX 4822080 4822107 -157777823 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 238 12 0 chrX 4822111 4822191 -157777739 + (CA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chrX 4822922 4822945 -157776985 + AT_rich Low_complexity Low_complexity 1 23 0 432 282 99 15 chrX 4823131 4823341 -157776589 + MLT1E1 LTR MaLR 15 244 -410 1645 235 121 50 chrX 4823410 4823964 -157775966 + MLT1E LTR MaLR 1 593 0 1099 293 56 58 chrX 4825077 4825596 -157774334 - MLT1E LTR MaLR -5 588 102 339 209 32 0 chrX 4825587 4825660 -157774270 - MLT1E LTR MaLR -430 137 64 * 360 298 43 31 chrX 4825838 4825999 -157773931 + MIR3 SINE MIR 44 206 -2 1073 212 23 46 chrX 4826061 4826368 -157773562 + MER33 DNA MER1_type 15 314 -10 250 337 12 65 chrX 4827071 4827240 -157772690 + MER5B DNA MER1_type 19 178 0 21 0 0 0 chrX 4827579 4827600 -157772330 + AT_rich Low_complexity Low_complexity 1 21 0 1057 149 8 2 chrX 4827873 4828063 -157771867 + L1PA16 LINE L1 5646 5835 -331 637 278 45 18 chrX 4828180 4828403 -157771527 - LTR16B LTR ERVL -231 233 5 1653 137 9 0 chrX 4828804 4829082 -157770848 - L1PA16 LINE L1 -196 5959 5669 1210 129 144 0 chrX 4829075 4829276 -157770654 + L1PA16 LINE L1 5928 6157 -9 * 688 414 99 39 chrX 4829680 4830062 -157769868 - MLT1C LTR MaLR -60 407 3 221 56 0 28 chrX 4830838 4830874 -157769056 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 626 65 0 2 chrX 4830874 4830959 -157768971 - L1PA3 LINE L1 -20 6148 6059 537 263 120 62 chrX 4831470 4831938 -157767992 - L1MC/D LINE L1 -1986 5822 5328 1839 155 10 0 chrX 4832052 4832349 -157767581 - MLT1B LTR MaLR 0 390 91 1753 188 14 51 chrX 4832353 4832570 -157767360 - MER2 DNA MER2_type -1 344 144 1798 180 30 35 chrX 4832570 4832909 -157767021 - MER1B DNA MER1_type 0 337 1 1753 188 14 51 chrX 4832909 4833047 -157766883 - MER2 DNA MER2_type -201 144 2 415 197 13 0 chrX 4833048 4833124 -157766806 - MLT1B LTR MaLR -303 87 11 1025 231 14 24 chrX 4833162 4833427 -157766503 + MLT2C1 LTR ERVL 99 429 -35 225 191 55 45 chrX 4833453 4833563 -157766367 + (TATAA)n Simple_repeat Simple_repeat 4 114 0 250 138 0 31 chrX 4833564 4833629 -157766301 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 232 130 65 43 chrX 4833640 4833732 -157766198 + (TA)n Simple_repeat Simple_repeat 2 95 0 202 155 50 37 chrX 4833826 4833987 -157765943 + (TA)n Simple_repeat Simple_repeat 1 163 0 1107 135 0 12 chrX 4833998 4834161 -157765769 - AluJb SINE Alu -18 294 134 253 140 0 140 chrX 4834175 4834232 -157765698 + MLT2C1 LTR ERVL 354 397 0 3050 76 95 0 chrX 4834438 4834847 -157765083 - LTR7 LTR ERV1 -2 448 1 2179 106 70 14 chrX 4834847 4835216 -157764714 - HERVH LTR ERV1 0 7713 7324 1430 119 18 9 chrX 4835216 4835434 -157764496 - HERVH LTR ERV1 -1894 5819 5600 4431 138 1 1 chrX 4835435 4836097 -157763833 - HERVH LTR ERV1 -2564 5149 4488 3522 97 4 4 chrX 4836099 4836593 -157763337 - HERVH LTR ERV1 -3720 3993 3500 869 155 20 0 chrX 4836592 4836740 -157763190 - HERVH LTR ERV1 -4423 3290 3140 * 20331 92 14 23 chrX 4836734 4839749 -157760181 - HERVH LTR ERV1 -4726 2987 1 3065 73 95 0 chrX 4839751 4840160 -157759770 - LTR7 LTR ERV1 -2 448 1 1532 196 96 25 chrX 4840286 4840649 -157759281 - MLT1B LTR MaLR -1 389 1 189 0 0 0 chrX 4842800 4842821 -157757109 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 323 0 0 chrX 4844135 4844197 -157755733 + L2 LINE L2 3209 3270 -2 184 280 147 87 chrX 4844584 4844734 -157755196 - MIR SINE MIR -91 171 13 470 274 144 45 chrX 4844907 4845108 -157754822 - MLT1E LTR MaLR -206 387 167 314 289 24 0 chrX 4845139 4845222 -157754708 - MLT1E LTR MaLR -457 85 1 2303 114 33 43 chrX 4845469 4845837 -157754093 - THE1B LTR MaLR 0 364 1 443 63 16 0 chrX 4845916 4845979 -157753951 + (ATG)n Simple_repeat Simple_repeat 2 65 0 199 301 217 18 chrX 4846341 4846507 -157753423 - MIR SINE MIR -1 261 63 203 284 11 23 chrX 4847270 4847358 -157752572 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 693 308 101 27 chrX 4847421 4847895 -157752035 + Tigger8 DNA MER2_type 149 657 -9 23 33 0 0 chrX 4847992 4848022 -157751908 + AT_rich Low_complexity Low_complexity 1 30 0 2807 94 8 6 chrX 4848066 4848429 -157751501 - THE1B LTR MaLR 0 364 1 1729 173 0 10 chrX 4848767 4849062 -157750868 - AluJo SINE Alu -13 299 8 24 32 0 0 chrX 4849978 4850009 -157749921 + AT_rich Low_complexity Low_complexity 1 31 0 2240 106 0 3 chrX 4850141 4850433 -157749497 - AluSc SINE Alu -18 291 1 186 234 0 21 chrX 4851391 4851438 -157748492 + MER5A DNA MER1_type 11 56 -133 257 98 0 78 chrX 4851442 4851493 -157748437 - L1P LINE L1 -729 5427 5381 * 3331 179 20 38 chrX 4851489 4851542 -157748388 + L1MA4A LINE L1 5442 5494 -809 2232 113 3 3 chrX 4851542 4851853 -157748077 + AluSx SINE Alu 1 311 -1 3331 179 20 38 chrX 4851853 4852492 -157747438 + L1MA4A LINE L1 5494 6122 -181 451 196 11 0 chrX 4852495 4852592 -157747338 + L1MA4A LINE L1 6058 6278 -1 219 250 296 0 chrX 4852604 4852692 -157747238 + MER5A DNA MER1_type 63 176 -13 1442 247 80 30 chrX 4853267 4853765 -157746165 - Charlie1b DNA MER1_type 0 523 1 254 239 0 0 chrX 4853934 4853980 -157745950 - MER45 DNA AcHobo -21 1560 1515 1313 116 5 53 chrX 4853986 4854193 -157745737 + AluJo SINE Alu 87 283 -29 277 80 20 20 chrX 4854195 4854245 -157745685 + (TA)n Simple_repeat Simple_repeat 1 50 0 297 159 0 63 chrX 4854265 4854328 -157745602 - MER45 DNA AcHobo -74 104 46 626 332 48 45 chrX 4854403 4854918 -157745012 - L1MCc LINE L1 -5245 1178 662 1949 159 47 31 chrX 4855040 4855584 -157744346 - MLT2A2 LTR ERVL 0 554 1 965 143 0 45 chrX 4855687 4855841 -157744089 - AluJo SINE Alu -9 303 157 593 159 9 9 chrX 4855841 4855948 -157743982 - AluJo SINE Alu -204 108 2 415 286 32 0 chrX 4855948 4856074 -157743856 - L1MCc LINE L1 -5953 470 341 375 214 27 0 chrX 4856086 4856198 -157743732 - LTR37A LTR ERV1 -11 415 301 333 223 66 33 chrX 4856364 4856485 -157743445 - LTR37A LTR ERV1 -252 174 50 240 35 0 0 chrX 4857454 4857483 -157742447 + (T)n Simple_repeat Simple_repeat 1 29 0 1542 157 6 60 chrX 4858451 4858628 -157741302 - AluJo SINE Alu -2 310 156 2237 106 0 7 chrX 4858628 4858931 -157740999 - AluSg SINE Alu -9 301 1 1542 157 6 60 chrX 4858931 4859071 -157740859 - AluJo SINE Alu -156 156 10 452 323 25 12 chrX 4859119 4859280 -157740650 + MIR SINE MIR 31 193 -69 1822 166 3 19 chrX 4860290 4860604 -157739326 - AluJo SINE Alu -3 309 1 325 248 51 76 chrX 4860988 4861145 -157738785 - HAL1b LINE L1 -864 484 332 299 357 116 61 chrX 4861747 4862125 -157737805 + L2 LINE L2 2824 3222 -50 218 286 82 20 chrX 4862438 4862536 -157737394 - MIR SINE MIR -54 208 105 1410 185 66 44 chrX 4863216 4863578 -157736352 - MLT1A2 LTR MaLR 0 374 5 5346 81 1 1 chrX 4863626 4864317 -157735613 - LTR8 LTR ERV1 0 691 1 207 0 0 0 chrX 4864900 4864923 -157735007 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2674 78 19 3 chrX 4864923 4865288 -157734642 - L1PA10 LINE L1 -17 6151 5778 1249 232 92 22 chrX 4865451 4865676 -157734254 - MSTD LTR MaLR 0 396 133 2140 95 0 3 chrX 4865676 4866010 -157733920 + AluSg1 SINE Alu 1 333 0 1249 232 92 22 chrX 4866010 4866153 -157733777 - MSTD LTR MaLR -263 133 1 1892 161 17 0 chrX 4866168 4866467 -157733463 + AluJo SINE Alu 1 304 -8 2231 121 0 6 chrX 4866467 4866781 -157733149 + AluSx SINE Alu 1 312 0 335 248 172 7 chrX 4867227 4867372 -157732558 + MLT1J1 LTR MaLR 3 171 -275 356 0 23 0 chrX 4867528 4867572 -157732358 + (TA)n Simple_repeat Simple_repeat 1 45 0 2618 93 11 16 chrX 4868812 4869189 -157730741 + THE1C LTR MaLR 1 375 0 345 140 0 0 chrX 4871118 4871175 -157728755 + (TA)n Simple_repeat Simple_repeat 2 58 0 459 92 0 0 chrX 4871797 4871862 -157728068 + (T)n Simple_repeat Simple_repeat 1 65 0 208 85 43 43 chrX 4872040 4872087 -157727843 + A-rich Low_complexity Low_complexity 5 51 0 324 335 188 0 chrX 4875759 4875929 -157724001 + MIR SINE MIR 1 202 -60 237 315 134 20 chrX 4876196 4876345 -157723585 + MIR SINE MIR 47 212 -50 228 250 0 0 chrX 4876565 4876625 -157723305 + (TA)n Simple_repeat Simple_repeat 2 61 0 297 366 36 32 chrX 4877106 4877357 -157722573 - L2 LINE L2 -467 2847 2596 233 128 21 0 chrX 4877399 4877446 -157722484 + GA-rich Low_complexity Low_complexity 4 51 0 987 180 120 0 chrX 4877670 4877853 -157722077 + AluJb SINE Alu 92 296 -16 228 398 8 16 chrX 4878734 4878862 -157721068 - MER5A DNA MER1_type 0 189 63 222 222 0 0 chrX 4880307 4880397 -157719533 + (TA)n Simple_repeat Simple_repeat 1 90 0 298 298 11 6 chrX 4881535 4881713 -157718217 + (TA)n Simple_repeat Simple_repeat 1 179 0 201 167 0 0 chrX 4881726 4881780 -157718150 + (TA)n Simple_repeat Simple_repeat 1 54 0 401 236 180 75 chrX 4882469 4882630 -157717300 + MER5A DNA MER1_type 11 188 -1 1219 151 0 0 chrX 4883040 4883225 -157716705 - AluJo SINE Alu -10 302 118 443 52 0 0 chrX 4883233 4883291 -157716639 + MADE1 DNA Mariner 22 79 -1 563 225 0 17 chrX 4883294 4883414 -157716516 - AluJo SINE Alu -184 118 1 1369 223 74 28 chrX 4883430 4883860 -157716070 - MLT1C LTR MaLR 0 467 18 2130 134 0 3 chrX 4884337 4884642 -157715288 + AluSx SINE Alu 1 304 -8 264 219 8 125 chrX 4885112 4885194 -157714736 - L1M LINE L1 -2379 5429 5366 1967 115 0 0 chrX 4885194 4885482 -157714448 - L1PA13 LINE L1 -3 6160 5873 264 219 8 125 chrX 4885482 4885527 -157714403 - L1M LINE L1 -2442 5366 5317 719 323 52 41 chrX 4885563 4886079 -157713851 - L1M4 LINE L1 -867 5279 4755 1877 125 80 0 chrX 4886079 4886368 -157713562 - AluSx SINE Alu 0 312 1 719 323 52 41 chrX 4886368 4886389 -157713541 - L1M4 LINE L1 -1391 4755 4736 669 166 0 0 chrX 4886607 4886752 -157713178 + GA-rich Low_complexity Low_complexity 1 145 0 180 77 0 0 chrX 4887523 4887549 -157712381 + (ATGGTG)n Simple_repeat Simple_repeat 3 28 0 22 56 0 0 chrX 4888085 4888121 -157711809 + AT_rich Low_complexity Low_complexity 1 36 0 1828 142 76 0 chrX 4889135 4889410 -157710520 - AluSg SINE Alu -14 296 1 991 142 108 48 chrX 4890399 4890540 -157709390 - L1MA8 LINE L1 -5 6286 6155 3125 88 12 2 chrX 4890540 4890970 -157708960 - MER57B LTR ERV1 0 434 1 991 142 108 48 chrX 4890970 4891096 -157708834 - L1MA8 LINE L1 -136 6155 6003 427 90 30 0 chrX 4891097 4891164 -157708766 + L1MA8 LINE L1 5908 5976 -336 656 238 83 0 chrX 4891537 4891718 -157708212 - MER58A DNA MER1_type 0 224 29 597 302 87 8 chrX 4892466 4892708 -157707222 + MIR SINE MIR 2 262 0 300 229 0 0 chrX 4896311 4896381 -157703549 - MER103 DNA DNA -87 79 10 358 359 48 7 chrX 4898563 4898836 -157701094 - L1MEd LINE L1 -3716 2413 2130 233 262 0 24 chrX 4899385 4899469 -157700461 - HAL1 LINE L1 -922 1585 1504 485 99 0 0 chrX 4899754 4899825 -157700105 - Alu SINE Alu -12 297 227 1135 172 0 0 chrX 4899825 4900005 -157699925 - AluJo SINE Alu -132 180 1 359 272 80 25 chrX 4900017 4900179 -157699751 - L1MEd LINE L1 -5017 1102 932 320 343 71 26 chrX 4900357 4900780 -157699150 - L1MEd LINE L1 -5300 819 378 303 337 94 30 chrX 4900935 4901137 -157698793 - L1MEd LINE L1 -5901 218 4 994 142 0 0 chrX 4902380 4902521 -157697409 - FRAM SINE Alu -24 152 12 1658 153 53 7 chrX 4902539 4902821 -157697109 - AluJo SINE Alu -17 295 1 1189 153 44 48 chrX 4902866 4903114 -157696816 + AluJo SINE Alu 41 287 -25 285 67 22 0 chrX 4904201 4904246 -157695684 + MADE1 DNA Mariner 1 46 -34 369 0 0 0 chrX 4904797 4904838 -157695092 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chrX 4904837 4904864 -157695066 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 180 0 0 0 chrX 4905325 4905345 -157694585 + (TG)n Simple_repeat Simple_repeat 1 20 0 336 24 0 0 chrX 4905348 4905389 -157694541 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chrX 4906210 4906231 -157693699 + AT_rich Low_complexity Low_complexity 1 21 0 762 253 98 83 chrX 4906320 4906767 -157693163 - MER20B DNA MER1_type -140 643 190 273 309 45 54 chrX 4906768 4906991 -157692939 - MER20B DNA MER1_type -553 230 10 985 105 0 0 chrX 4907181 4907305 -157692625 - AluSq/x SINE Alu -188 124 1 25 0 0 0 chrX 4907545 4907570 -157692360 + AT_rich Low_complexity Low_complexity 1 25 0 7783 30 1 1 chrX 4907616 4908513 -157691417 - MER11D LTR ERVK 0 897 1 1414 260 189 36 chrX 4908749 4909664 -157690266 + Charlie1 DNA MER1_type 2 2353 -408 2485 142 34 5 chrX 4909969 4910385 -157689545 - MSTA LTR MaLR 0 428 1 2091 127 7 10 chrX 4910607 4910915 -157689015 - AluSx SINE Alu -5 307 1 3909 179 42 23 chrX 4910915 4911793 -157688137 - L1MC1 LINE L1 -6 6327 5433 1945 186 13 5 chrX 4911885 4912267 -157687663 + MLT1B LTR MaLR 6 390 0 2547 51 0 0 chrX 4912299 4912594 -157687336 - AluY SINE Alu -16 295 1 23 54 0 0 chrX 4912725 4912762 -157687168 + AT_rich Low_complexity Low_complexity 1 37 0 2059 67 82 0 chrX 4913050 4913332 -157686598 - AluY SINE Alu -6 305 1 392 291 44 25 chrX 4914748 4914906 -157685024 + LTR16A1 LTR ERVL 7 167 -290 267 246 0 0 chrX 4914967 4915032 -157684898 + LTR16A1 LTR ERVL 392 456 -1 370 308 70 42 chrX 4916016 4916230 -157683700 + MIR SINE MIR 9 228 -34 298 132 66 59 chrX 4916276 4916412 -157683518 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 273 29 0 0 chrX 4916426 4916460 -157683470 + (TC)n Simple_repeat Simple_repeat 1 34 0 386 225 36 0 chrX 4916463 4916574 -157683356 - L1MC4 LINE L1 -1314 6728 6614 347 0 0 23 chrX 4916617 4916661 -157683269 + (CA)n Simple_repeat Simple_repeat 2 44 0 249 93 56 0 chrX 4917701 4917755 -157682175 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 536 90 41 28 chrX 4917787 4917932 -157681998 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 314 296 120 19 chrX 4918025 4918400 -157681530 - L1ME LINE L1 -388 5765 5350 205 300 11 0 chrX 4918489 4918579 -157681351 + (TA)n Simple_repeat Simple_repeat 1 91 0 343 290 76 37 chrX 4918722 4919129 -157680801 - L1ME LINE L1 -1031 5098 4676 29 90 0 0 chrX 4919137 4919215 -157680715 + AT_rich Low_complexity Low_complexity 1 78 0 390 279 73 46 chrX 4919433 4920025 -157679905 - L1ME LINE L1 -4866 1253 646 255 279 13 0 chrX 4920568 4920647 -157679283 - L1ME LINE L1 -6011 108 29 595 300 112 11 chrX 4920901 4921188 -157678742 + L2 LINE L2 2994 3309 -4 2093 135 3 3 chrX 4921351 4921648 -157678282 + AluSx SINE Alu 1 297 -15 240 35 0 0 chrX 4921648 4921677 -157678253 + (TA)n Simple_repeat Simple_repeat 1 29 0 289 270 6 6 chrX 4921698 4921876 -157678054 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 374 257 0 12 chrX 4921892 4922063 -157677867 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 299 298 0 0 chrX 4922063 4922157 -157677773 + (TA)n Simple_repeat Simple_repeat 2 95 0 26 82 0 0 chrX 4922203 4922264 -157677666 + AT_rich Low_complexity Low_complexity 1 61 0 1294 149 57 50 chrX 4922350 4922612 -157677318 - AluJo SINE Alu -48 264 1 22 0 0 0 chrX 4923238 4923260 -157676670 + AT_rich Low_complexity Low_complexity 1 22 0 1782 175 0 46 chrX 4923319 4923645 -157676285 - AluJb SINE Alu -1 311 1 701 216 25 49 chrX 4925328 4925532 -157674398 + L1MB2 LINE L1 5851 6049 -122 1774 175 3 33 chrX 4925532 4925831 -157674099 + L1PA15 LINE L1 5816 6104 -61 1808 133 67 25 chrX 4925831 4926191 -157673739 - THE1C LTR MaLR 0 375 1 1774 175 3 33 chrX 4926191 4926251 -157673679 + L1PA15 LINE L1 6104 6164 -1 510 167 44 18 chrX 4926254 4926368 -157673562 + L1MB2 LINE L1 6054 6170 -1 1958 143 44 0 chrX 4926611 4926904 -157673026 - AluJb SINE Alu -2 310 5 265 263 0 18 chrX 4927942 4927999 -157671931 + MER58 DNA MER1_type 1 56 -168 3047 103 33 2 chrX 4928043 4928499 -157671431 + L1PA13 LINE L1 5692 6161 -2 240 195 49 98 chrX 4928507 4928589 -157671341 + MER58 DNA MER1_type 2318 2395 -25 187 215 0 21 chrX 4930084 4930177 -157669753 + CT-rich Low_complexity Low_complexity 1 91 0 1868 133 39 19 chrX 4930206 4930567 -157669363 + L1MA2 LINE L1 5903 6270 -34 314 258 0 43 chrX 4930629 4930722 -157669208 + L1MC4 LINE L1 6614 6702 -1340 230 191 0 32 chrX 4930725 4930788 -157669142 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 375 62 234 0 chrX 4930788 4930852 -157669078 + MADE1 DNA Mariner 1 79 -1 1382 196 64 57 chrX 4930887 4931183 -157668747 - MLT2C2 LTR ERVL -73 391 90 1485 171 23 48 chrX 4931183 4931493 -157668437 + AluJo SINE Alu 1 302 -10 1382 196 64 57 chrX 4931493 4931584 -157668346 - MLT2C2 LTR ERVL -374 90 1 809 120 0 0 chrX 4931619 4931744 -157668186 - L1PB3 LINE L1 -1 6153 6029 3739 107 20 118 chrX 4931844 4932683 -157667247 - L1PB3 LINE L1 -121 6033 5277 1016 234 75 51 chrX 4933312 4933770 -157666160 - MLT1C LTR MaLR -1 466 1 298 230 115 22 chrX 4933781 4933920 -157666010 - MLT1C LTR MaLR -124 343 192 1881 116 53 11 chrX 4934185 4934470 -157665460 - AluJo SINE Alu -15 297 1 438 255 99 36 chrX 4937348 4937521 -157662409 + MER20 DNA MER1_type 12 200 -19 4104 102 30 19 chrX 4937521 4938149 -157661781 - MER41B LTR ERV1 0 635 1 438 255 99 36 chrX 4938149 4938167 -157661763 + MER20 DNA MER1_type 200 215 -4 266 361 30 0 chrX 4939146 4939279 -157660651 + MIR3 SINE MIR 65 201 -7 203 217 29 0 chrX 4939450 4939519 -157660411 + (TA)n Simple_repeat Simple_repeat 1 71 0 1883 210 40 9 chrX 4939541 4939971 -157659959 - MLT2B2 LTR ERVL -39 515 3 1881 157 10 3 chrX 4941138 4941437 -157658493 - AluSx SINE Alu -11 301 1 2222 115 0 3 chrX 4942019 4942314 -157657616 - AluSx SINE Alu -18 294 1 512 131 0 0 chrX 4942540 4942624 -157657306 + L1MA2 LINE L1 6161 6244 -60 2165 134 0 0 chrX 4944401 4944743 -157655187 - AluSx SINE Alu 0 342 1 211 338 188 4 chrX 4945296 4945562 -157654368 + L2 LINE L2 2566 2880 -434 221 298 61 44 chrX 4945622 4945736 -157654194 + MER5A DNA MER1_type 74 189 0 267 54 0 0 chrX 4947531 4947568 -157652362 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 736 188 8 0 chrX 4947929 4948057 -157651873 + FLAM_A SINE Alu 1 129 -4 189 350 51 35 chrX 4948170 4948355 -157651575 - MIR SINE MIR -17 245 57 2198 128 0 0 chrX 4948865 4949161 -157650769 + AluSx SINE Alu 1 296 -16 1741 160 23 23 chrX 4949262 4949606 -157650324 - MLT1B LTR MaLR -46 344 1 306 123 0 0 chrX 4950048 4950105 -157649825 + (GA)n Simple_repeat Simple_repeat 2 58 0 559 200 15 7 chrX 4950764 4950899 -157649031 - L1MB7 LINE L1 -218 5966 5831 230 216 82 0 chrX 4950899 4950996 -157648934 + (TA)n Simple_repeat Simple_repeat 1 105 0 3646 131 35 11 chrX 4951504 4951856 -157648074 + L1MC1 LINE L1 5693 6068 -265 373 88 176 0 chrX 4951856 4951924 -157648006 - MADE1 DNA Mariner 0 80 1 3646 131 35 11 chrX 4951924 4952195 -157647735 + L1MC1 LINE L1 6068 6331 -2 381 225 0 0 chrX 4952336 4952416 -157647514 + L1MC1 LINE L1 6240 6319 -14 1899 155 39 130 chrX 4952439 4952863 -157647067 + L1PA16 LINE L1 5651 6013 -153 2696 38 0 0 chrX 4952863 4953181 -157646749 + AluYb8 SINE Alu 1 318 0 1899 155 39 130 chrX 4953181 4953318 -157646612 + L1PA16 LINE L1 6013 6161 -5 22 0 0 0 chrX 4954941 4954963 -157644967 + AT_rich Low_complexity Low_complexity 1 22 0 221 312 58 45 chrX 4955455 4955631 -157644299 - L2 LINE L2 -268 3004 2825 1073 158 0 0 chrX 4955646 4955810 -157644120 + FRAM SINE Alu 1 163 -13 244 244 26 39 chrX 4955860 4955938 -157643992 + L2 LINE L2 2691 2767 -547 2353 125 100 5 chrX 4955942 4956333 -157643597 + MSTA LTR MaLR 1 428 0 194 232 18 0 chrX 4956623 4956679 -157643251 - L2 LINE L2 -1730 1584 1528 526 138 0 0 chrX 4956776 4956856 -157643074 - MADE1 DNA Mariner 0 80 1 360 273 114 11 chrX 4957127 4957303 -157642627 - L1MB7 LINE L1 -302 5819 5626 192 370 50 0 chrX 4958402 4958502 -157641428 + L2 LINE L2 3206 3310 -3 1955 105 42 27 chrX 4959194 4959527 -157640403 + THE1B LTR MaLR 1 338 -26 323 0 0 0 chrX 4959553 4959590 -157640340 + THE1B LTR MaLR 319 355 0 4990 107 8 16 chrX 4960280 4960539 -157639391 - L1PA13 LINE L1 -4 6159 5899 2410 60 13 10 chrX 4960539 4960840 -157639090 + AluY SINE Alu 1 302 -9 4990 107 8 16 chrX 4960840 4961375 -157638555 - L1PA13 LINE L1 -264 5899 5372 377 293 148 33 chrX 4961383 4961653 -157638277 + HAL1b LINE L1 172 472 -876 400 252 62 78 chrX 4961704 4962077 -157637853 + HAL1b LINE L1 581 947 -401 5387 133 4 13 chrX 4962303 4963212 -157636718 - L1PA13 LINE L1 0 6163 5263 1984 212 19 33 chrX 4963671 4964156 -157635774 - LTR31 LTR ERV1 -15 604 127 3781 133 22 3 chrX 4965357 4965995 -157633935 + MER39B LTR ERV1 4 653 0 361 335 64 62 chrX 4966180 4966386 -157633544 - L2 LINE L2 -9 3304 3100 2332 107 0 0 chrX 4966386 4966695 -157633235 + AluSc SINE Alu 1 309 0 361 335 64 62 chrX 4966695 4967071 -157632859 - L2 LINE L2 -213 3100 2716 2014 150 0 0 chrX 4967363 4967657 -157632273 + AluJb SINE Alu 1 294 -18 366 121 0 0 chrX 4967701 4967767 -157632163 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 188 108 0 27 chrX 4967789 4967826 -157632104 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 1883 199 13 5 chrX 4968567 4968959 -157630971 - L1PA16 LINE L1 -9 6157 5763 848 188 28 17 chrX 4968959 4969135 -157630795 - L1PA16 LINE L1 -310 5856 5679 2300 106 8 65 chrX 4969263 4969649 -157630281 + THE1B LTR MaLR 1 364 0 24 67 0 0 chrX 4972405 4972450 -157627480 + AT_rich Low_complexity Low_complexity 1 45 0 759 247 6 0 chrX 4972586 4972768 -157627162 - MER58A DNA MER1_type -1 223 41 242 211 19 0 chrX 4973392 4973444 -157626486 + AluJ/FLAM SINE Alu 17 69 -233 2730 148 140 27 chrX 4973541 4974169 -157625761 - LTR34 LTR ERV1 0 699 1 1217 318 92 46 chrX 4974174 4974322 -157625608 - L2 LINE L2 -5 3308 3168 2576 98 19 3 chrX 4974322 4974691 -157625239 - THE1C LTR MaLR 0 375 1 1217 318 92 46 chrX 4974691 4975458 -157624472 - L2 LINE L2 -145 3168 2358 1993 99 60 7 chrX 4975753 4976036 -157623894 - AluSq SINE Alu -15 298 1 2183 133 28 17 chrX 4976782 4977142 -157622788 + THE1B LTR MaLR 1 364 0 1719 187 18 22 chrX 4977179 4977566 -157622364 + L1PB4 LINE L1 5767 6276 -23 761 277 81 14 chrX 4977820 4978116 -157621814 + MLT1F1 LTR MaLR 252 567 0 2003 133 10 7 chrX 4978212 4978512 -157621418 + AluSx SINE Alu 10 310 -2 381 294 98 33 chrX 4978535 4978719 -157621211 + MIR SINE MIR 49 244 -18 640 149 9 0 chrX 4978900 4979014 -157620916 + L1MB8 LINE L1 6063 6177 -1 1902 154 7 0 chrX 4979093 4979386 -157620544 - AluJb SINE Alu -17 295 1 539 218 22 24 chrX 4979754 4979918 -157620012 - MLT1E LTR MaLR -374 177 12 518 198 16 16 chrX 4980544 4980665 -157619265 + MLT1E LTR MaLR 471 591 -2 541 259 30 51 chrX 4983346 4983543 -157616387 + MIR SINE MIR 70 262 0 270 0 0 0 chrX 4983774 4983804 -157616126 + (TG)n Simple_repeat Simple_repeat 2 31 0 1500 141 7 46 chrX 4984010 4984294 -157615636 + LTR8 LTR ERV1 1 273 -418 1376 147 23 34 chrX 4984315 4984581 -157615349 + LTR8 LTR ERV1 429 691 0 2004 140 0 23 chrX 4985310 4985617 -157614313 + AluSx SINE Alu 1 300 -12 24 0 0 0 chrX 4986351 4986375 -157613555 + AT_rich Low_complexity Low_complexity 1 24 0 332 163 0 25 chrX 4986377 4986457 -157613473 - L1MA4 LINE L1 -1 6299 6222 212 233 0 0 chrX 4986969 4987012 -157612918 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 2143 137 0 0 chrX 4987152 4987465 -157612465 + AluSq SINE Alu 1 313 0 613 90 0 20 chrX 4987465 4987565 -157612365 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 399 246 45 102 chrX 4987589 4987833 -157612097 - L1ME2 LINE L1 -30 6134 5905 381 158 105 0 chrX 4987825 4987901 -157612029 - L1M3 LINE L1 -548 5786 5703 * 331 222 11 22 chrX 4987902 4987992 -157611938 - L1ME2 LINE L1 -420 5744 5656 267 286 112 0 chrX 4987994 4988190 -157611740 - L1ME LINE L1 -3798 2742 2525 618 100 45 0 chrX 4988240 4988350 -157611580 - L1PA13 LINE L1 0 6163 6049 710 260 58 56 chrX 4988652 4989517 -157610413 - L1ME LINE L1 -4585 1955 1047 411 21 0 0 chrX 4989547 4989595 -157610335 + (TG)n Simple_repeat Simple_repeat 1 48 0 1399 110 5 0 chrX 4989615 4989824 -157610106 + MER41D LTR ERV1 1 210 -347 7719 23 0 0 chrX 4989878 4991149 -157608781 + L1PA3 LINE L1 4882 6152 -3 403 123 0 41 chrX 4991161 4991234 -157608696 + MER41D LTR ERV1 488 557 0 379 298 44 25 chrX 4991465 4991623 -157608307 + LTR16A1 LTR ERVL 7 167 -290 1016 257 85 26 chrX 4991778 4992237 -157607693 - L1M4 LINE L1 -1988 4158 3673 803 267 58 16 chrX 4992249 4992612 -157607318 - L1MEc LINE L1 -4418 1978 1601 216 0 0 0 chrX 4992641 4992665 -157607265 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2048 104 11 21 chrX 4992665 4992952 -157606978 - AluY SINE Alu -27 284 1 572 280 88 15 chrX 4993042 4993299 -157606631 - L1MEc LINE L1 -4854 1361 1063 453 19 0 0 chrX 4993299 4993353 -157606577 + (TG)n Simple_repeat Simple_repeat 2 55 0 572 280 88 15 chrX 4993353 4993492 -157606438 - L1MEc LINE L1 -5152 1063 936 1542 114 13 9 chrX 4993515 4993743 -157606187 - AluSg/x SINE Alu -7 305 77 763 264 10 40 chrX 4993771 4994074 -157605856 - L1MEc LINE L1 -5589 807 514 1312 117 0 0 chrX 4994175 4994346 -157605584 - AluSq SINE Alu -122 191 21 227 159 48 0 chrX 4994518 4994581 -157605349 - L1MC4 LINE L1 -1337 6705 6640 1325 197 4 8 chrX 4994805 4995059 -157604871 - AluJo SINE Alu -14 298 46 237 292 42 0 chrX 4995061 4995133 -157604797 - MER5A DNA MER1_type -114 75 1 998 242 17 4 chrX 4995765 4996005 -157603925 - MLT1D LTR MaLR -2 503 261 246 265 0 15 chrX 4996018 4996086 -157603844 + T-rich Low_complexity Low_complexity 3 69 0 206 348 54 0 chrX 4996358 4996450 -157603480 - MIR3 SINE MIR 0 208 112 2188 121 36 33 chrX 4996766 4997129 -157602801 + THE1B LTR MaLR 1 364 0 1976 209 27 8 chrX 4997644 4998130 -157601800 - L1MC2 LINE L1 -95 7658 6119 309 296 46 20 chrX 4998420 4998572 -157601358 - L1ME LINE L1 -355 5766 5611 809 136 21 0 chrX 4998580 4998720 -157601210 + L1ME LINE L1 5469 5611 -555 614 133 10 0 chrX 4998741 4998839 -157601091 - MLT2C2 LTR ERVL -205 259 161 1775 175 37 10 chrX 4998841 4999197 -157600733 + MLT1A1 LTR MaLR 1 365 0 546 228 6 6 chrX 4999197 4999355 -157600575 - MLT2C2 LTR ERVL -301 163 6 2780 129 11 23 chrX 4999813 5000286 -157599644 - L1PA16 LINE L1 -3 6163 5697 1566 169 83 4 chrX 5000370 5000821 -157599109 + AluJb SINE Alu 1 472 0 1648 159 61 3 chrX 5001507 5001838 -157598092 + AluJb SINE Alu 1 348 0 21 0 0 0 chrX 5002759 5002780 -157597150 + AT_rich Low_complexity Low_complexity 1 21 0 1388 272 91 28 chrX 5003128 5003778 -157596152 + L1MB8 LINE L1 4023 4713 -1433 * 1579 204 29 34 chrX 5003769 5004186 -157595744 + L1MB8 LINE L1 5727 6141 -37 3163 149 31 9 chrX 5004490 5005032 -157594898 - MER41C LTR ERV1 0 554 1 195 277 0 0 chrX 5005493 5005558 -157594372 + (TA)n Simple_repeat Simple_repeat 2 66 0 299 289 45 53 chrX 5005794 5006040 -157593890 - L1M4 LINE L1 -1499 4647 4404 2071 92 13 46 chrX 5006405 5006711 -157593219 + AluSq SINE Alu 3 298 -15 2578 129 4 62 chrX 5006744 5007226 -157592704 + LTR8 LTR ERV1 1 454 -237 2883 136 25 34 chrX 5007226 5007756 -157592174 + MER61E LTR ERV1 1 525 -44 1212 138 24 55 chrX 5007759 5008013 -157591917 + LTR8 LTR ERV1 446 691 0 303 222 0 0 chrX 5008298 5008361 -157591569 - L1MC3 LINE L1 -517 7268 7206 1036 132 22 7 chrX 5008371 5008686 -157591244 - MLT2A2 LTR ERVL -4 449 197 2924 62 2 107 chrX 5008686 5008766 -157591164 - MLT2A1 LTR ERVL 0 444 357 2367 87 3 0 chrX 5008766 5009066 -157590864 + AluSp SINE Alu 1 301 -12 2924 62 2 107 chrX 5009066 5009130 -157590800 - MLT2A1 LTR ERVL -87 357 288 2568 85 8 3 chrX 5009130 5009483 -157590447 - THE1A LTR MaLR 0 355 1 2924 62 2 107 chrX 5009483 5009833 -157590097 - MLT2A1 LTR ERVL -156 288 1 1477 71 5 0 chrX 5009835 5010033 -157589897 - MLT2A2 LTR ERVL -254 199 1 329 249 10 48 chrX 5010057 5010163 -157589767 - L1MC4 LINE L1 -768 7099 6927 2097 76 3 8 chrX 5010165 5010526 -157589404 - LTR7 LTR ERV1 -2 448 1 1010 270 108 14 chrX 5010528 5010844 -157589086 - L1MC4 LINE L1 -1028 7014 6632 3262 146 47 17 chrX 5010844 5011446 -157588484 - LTR29 LTR ERV1 -2 620 1 1010 270 108 14 chrX 5011446 5011629 -157588301 - L1MC4 LINE L1 -1410 6632 6468 1915 140 0 11 chrX 5011728 5012006 -157587924 - AluSx SINE Alu -36 276 2 3852 147 11 0 chrX 5012175 5012803 -157587127 + MER41B LTR ERV1 1 635 0 811 310 37 13 chrX 5013317 5013691 -157586239 - L1ME LINE L1 -5651 419 37 661 209 5 32 chrX 5014149 5014306 -157585624 + L1MB8 LINE L1 5750 5903 -275 9066 39 2 2 chrX 5014306 5015377 -157584553 - MER11C LTR ERVK 0 1071 1 661 209 5 32 chrX 5015377 5015406 -157584524 + L1MB8 LINE L1 5903 5931 -247 262 259 0 12 chrX 5015444 5015525 -157584405 + LTR16B LTR ERVL 375 454 -10 4397 138 26 21 chrX 5015794 5016598 -157583332 + L1MA4 LINE L1 5492 6299 -1 25 0 0 0 chrX 5019098 5019123 -157580807 + AT_rich Low_complexity Low_complexity 1 25 0 2167 144 61 16 chrX 5019174 5019603 -157580327 - L1MA9 LINE L1 -43 6269 5822 943 181 2 5 chrX 5019899 5020448 -157579482 + (CAT)n Simple_repeat Simple_repeat 1 547 0 664 189 0 38 chrX 5020444 5020629 -157579301 + (CACCAT)n Simple_repeat Simple_repeat 3 180 0 * 756 191 0 0 chrX 5020597 5020775 -157579155 + (CAT)n Simple_repeat Simple_repeat 2 179 0 231 365 21 21 chrX 5021061 5021206 -157578724 - L2 LINE L2 0 3313 3169 440 205 0 41 chrX 5022351 5022492 -157577438 + MER5B DNA MER1_type 2 177 -1 255 318 24 12 chrX 5022564 5022649 -157577281 - MER5A DNA MER1_type -86 103 18 1483 204 32 24 chrX 5023010 5023387 -157576543 - MLT1D LTR MaLR -8 497 118 340 132 26 66 chrX 5023666 5023742 -157576188 - MLT1D LTR MaLR -420 85 13 * 3101 147 29 11 chrX 5023739 5024297 -157575633 - LTR24B LTR ERV1 -5 571 4 1401 168 40 0 chrX 5024511 5024785 -157575145 - MER7A DNA MER2_type -1 345 63 619 208 15 0 chrX 5024822 5024952 -157574978 - MER7A DNA MER2_type -216 130 1 34 42 0 0 chrX 5025206 5025254 -157574676 + AT_rich Low_complexity Low_complexity 1 48 0 1968 159 7 7 chrX 5025339 5025647 -157574283 + AluJo SINE Alu 1 308 -4 358 306 88 26 chrX 5025948 5026141 -157573789 + MIR SINE MIR 15 219 -43 361 130 30 20 chrX 5027088 5027188 -157572742 + (TA)n Simple_repeat Simple_repeat 1 101 0 271 263 38 12 chrX 5029459 5029539 -157570391 + MIR SINE MIR 88 169 -93 261 0 0 0 chrX 5029625 5029654 -157570276 + (TG)n Simple_repeat Simple_repeat 2 30 0 1595 213 71 69 chrX 5029732 5030367 -157569563 + MER92B LTR ERV1 1 636 0 3126 99 4 25 chrX 5030902 5031377 -157568553 - MER4C LTR ERV1 0 465 1 915 263 121 36 chrX 5031396 5031730 -157568200 - MLT2F LTR ERVL -173 490 107 4301 153 39 20 chrX 5031730 5032495 -157567435 - LTR39 LTR ERV1 0 783 4 915 263 121 36 chrX 5032495 5032608 -157567322 - MLT2F LTR ERVL -556 107 5 883 218 50 50 chrX 5033080 5033273 -157566657 - MER58B DNA MER1_type -2080 340 145 3863 145 35 22 chrX 5033273 5033990 -157565940 - L1MC1 LINE L1 -2 6331 5606 883 218 50 50 chrX 5033990 5034058 -157565872 - MER58B DNA MER1_type -2274 146 79 2470 62 0 0 chrX 5034156 5034448 -157565482 - AluY SINE Alu -19 292 1 1184 249 31 62 chrX 5036161 5036343 -157563587 + MLT1C LTR MaLR 1 187 -280 1932 134 0 23 chrX 5036343 5036509 -157563421 - AluSx SINE Alu -12 300 132 2369 87 0 3 chrX 5036509 5036807 -157563123 - AluSx SINE Alu -11 301 5 450 94 0 0 chrX 5036815 5036879 -157563051 + (TA)n Simple_repeat Simple_repeat 2 65 0 1932 134 0 23 chrX 5036879 5037010 -157562920 - AluSx SINE Alu -187 125 1 1184 249 31 62 chrX 5037010 5037309 -157562621 + MLT1C LTR MaLR 187 467 0 1945 163 40 36 chrX 5037457 5038006 -157561924 + MLT2A2 LTR ERVL 1 554 0 396 288 30 0 chrX 5038040 5038172 -157561758 + L2 LINE L2 2161 2296 -1018 406 287 109 17 chrX 5038186 5038360 -157561570 - MIR SINE MIR -14 248 59 35 0 0 0 chrX 5038421 5038456 -157561474 + AT_rich Low_complexity Low_complexity 1 35 0 1450 184 26 45 chrX 5038514 5038824 -157561106 - AluJo SINE Alu -8 304 1 184 328 0 30 chrX 5038878 5038945 -157560985 + MIR SINE MIR 125 189 -73 1033 186 134 0 chrX 5039359 5039553 -157560377 + AluJo SINE Alu 1 220 -92 1091 218 153 0 chrX 5039589 5039850 -157560080 + AluJo SINE Alu 11 311 -1 225 29 0 59 chrX 5040181 5040215 -157559715 + L1P4 LINE L1 5693 5724 -439 2751 194 91 56 chrX 5041068 5041884 -157558046 + MER21B LTR ERV1 1 844 -19 870 238 5 0 chrX 5041909 5042098 -157557832 + MER58A DNA MER1_type 35 224 0 600 271 35 15 chrX 5043691 5043894 -157556036 + MER3 DNA MER1_type 3 209 0 333 0 0 0 chrX 5043987 5044024 -157555906 + (T)n Simple_repeat Simple_repeat 1 37 0 2184 119 20 0 chrX 5044074 5044369 -157555561 + AluSx SINE Alu 3 303 -9 1758 257 15 39 chrX 5044579 5044663 -157555267 + MLT1E2 LTR MaLR 1 85 -541 1875 152 35 70 chrX 5044663 5045065 -157554865 + MLT1B LTR MaLR 3 390 0 1758 257 15 39 chrX 5045065 5045521 -157554409 + MLT1E2 LTR MaLR 85 528 -98 835 176 0 121 chrX 5045575 5045774 -157554156 - AluJo SINE Alu -52 260 86 350 258 0 0 chrX 5045774 5045871 -157554059 + MLT1E2 LTR MaLR 530 626 0 213 276 17 0 chrX 5046632 5046690 -157553240 - L2 LINE L2 -5 3308 3250 619 234 108 73 chrX 5046962 5047279 -157552651 - MER4C LTR ERV1 0 694 276 547 194 48 75 chrX 5047278 5047547 -157552383 - LTR59 LTR ERV1 -220 377 136 * 421 144 39 19 chrX 5047633 5047737 -157552193 - MER4C LTR ERV1 -359 106 1 963 254 103 67 chrX 5048127 5048634 -157551296 + MLT1E2 LTR MaLR 80 604 -22 574 182 0 0 chrX 5049071 5049181 -157550749 + L1MB1 LINE L1 6019 6128 -40 719 203 23 60 chrX 5049214 5049431 -157550499 + AluJo SINE Alu 3 211 -101 252 191 0 15 chrX 5049733 5049815 -157550115 + (TTG)n Simple_repeat Simple_repeat 1 80 0 577 121 0 0 chrX 5050149 5050232 -157549698 - AluJo SINE Alu -229 83 1 1758 161 28 24 chrX 5050686 5050977 -157548953 - AluJo SINE Alu -20 292 1 1055 255 143 37 chrX 5050979 5051488 -157548442 - MLT1E LTR MaLR -12 581 19 467 110 0 0 chrX 5051612 5051685 -157548245 + L1PA16 LINE L1 6091 6163 -3 215 271 0 0 chrX 5052032 5052080 -157547850 + (TA)n Simple_repeat Simple_repeat 2 49 0 1525 217 15 35 chrX 5052834 5053290 -157546640 - L1MB8 LINE L1 -5 6173 5727 3027 23 0 0 chrX 5053796 5054147 -157545783 + L1PA4 LINE L1 5802 6152 -3 1183 139 8 48 chrX 5054638 5054890 -157545040 + L1MA5A LINE L1 6054 6295 -2 207 350 14 70 chrX 5055087 5055230 -157544700 - MIR3 SINE MIR -72 136 2 391 197 24 39 chrX 5055523 5055650 -157544280 - L1MC4 LINE L1 0 8042 7918 290 200 47 0 chrX 5055679 5055764 -157544166 + (TA)n Simple_repeat Simple_repeat 1 89 0 661 218 111 70 chrX 5055773 5056204 -157543726 - L1MC4 LINE L1 -147 7895 7447 615 256 0 0 chrX 5056286 5056462 -157543468 + (TA)n Simple_repeat Simple_repeat 2 177 0 439 324 0 7 chrX 5056472 5056617 -157543313 + (TATATG)n Simple_repeat Simple_repeat 4 147 0 1942 147 0 3 chrX 5059641 5059967 -157539963 + AluSx SINE Alu 1 325 0 1929 177 3 0 chrX 5060046 5060357 -157539573 - AluJo SINE Alu 0 312 1 2269 119 0 3 chrX 5060573 5060885 -157539045 + AluSx SINE Alu 1 311 -1 360 0 0 0 chrX 5061031 5061071 -157538859 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 837 213 15 15 chrX 5061182 5061379 -157538551 + MER58A DNA MER1_type 27 223 -1 260 290 0 14 chrX 5062586 5062655 -157537275 + L2 LINE L2 3242 3309 -4 287 299 114 30 chrX 5063327 5063494 -157536436 + MIR SINE MIR 52 232 -30 1686 191 10 0 chrX 5063943 5064231 -157535699 - AluJb SINE Alu -21 291 1 1456 183 173 90 chrX 5065144 5065922 -157534008 + LTR1B LTR ERV1 1 1020 0 1596 200 13 27 chrX 5066698 5066998 -157532932 - AluJo SINE Alu -16 296 1 195 307 68 34 chrX 5067794 5067882 -157532048 + MIR SINE MIR 55 145 -63 335 236 28 0 chrX 5068048 5068120 -157531810 - MER58A DNA MER1_type -31 76 3 21 0 0 0 chrX 5068263 5068284 -157531646 + AT_rich Low_complexity Low_complexity 1 21 0 350 205 3 0 chrX 5068672 5068747 -157531183 + L1PB4 LINE L1 5735 5811 -355 798 73 0 0 chrX 5069477 5069587 -157530343 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 1653 197 15 6 chrX 5069591 5069931 -157529999 + L1PB4 LINE L1 5808 6150 -6 441 259 0 17 chrX 5069932 5070048 -157529882 + MIR SINE MIR 149 262 0 229 163 82 0 chrX 5070063 5070112 -157529818 + LTR16A1 LTR ERVL 405 457 0 2143 118 0 14 chrX 5070667 5070963 -157528967 - AluSx SINE Alu -20 292 1 1868 135 56 31 chrX 5071256 5071611 -157528319 - THE1B LTR MaLR 0 364 1 637 249 15 34 chrX 5071877 5072082 -157527848 + MER20 DNA MER1_type 16 216 -3 201 39 0 0 chrX 5073364 5073390 -157526540 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chrX 5074268 5074294 -157525636 + AT_rich Low_complexity Low_complexity 1 26 0 4492 137 31 23 chrX 5074421 5075283 -157524647 - L1PB4 LINE L1 -12 6144 5276 510 303 0 13 chrX 5075384 5075536 -157524394 - MER63 DNA MER1_type -277 785 10 505 313 7 0 chrX 5076462 5076606 -157523324 + MER63A DNA MER1_type 57 201 -9 1578 222 128 18 chrX 5076700 5076824 -157523106 - MLT1D LTR MaLR 0 505 396 3662 129 22 19 chrX 5076824 5077083 -157522847 - L1PA16 LINE L1 0 6166 5909 2137 114 19 53 chrX 5077083 5077460 -157522470 - THE1B LTR MaLR 0 364 1 3662 129 22 19 chrX 5077460 5077830 -157522100 - L1PA16 LINE L1 -257 5909 5535 1578 222 128 18 chrX 5077830 5078160 -157521770 - MLT1D LTR MaLR -109 396 1 554 152 0 0 chrX 5078346 5078438 -157521492 - AluY SINE Alu -6 305 214 342 292 0 0 chrX 5078627 5078716 -157521214 - L1MC4 LINE L1 -1339 6703 6615 534 213 0 55 chrX 5079367 5079494 -157520436 - FLAM_A SINE Alu -9 133 14 711 180 0 0 chrX 5079600 5079722 -157520208 - FLAM_C SINE Alu -21 122 1 978 206 42 35 chrX 5079758 5079879 -157520051 - MER33 DNA MER1_type -2269 316 197 2502 148 21 23 chrX 5079879 5080312 -157519618 + Tigger2a DNA MER2_type 2 433 -1 978 206 42 35 chrX 5080312 5080500 -157519430 - MER33 DNA MER1_type -2388 197 5 257 73 0 24 chrX 5080636 5080677 -157519253 + (TTA)n Simple_repeat Simple_repeat 2 41 0 181 191 0 48 chrX 5081281 5081344 -157518586 + CT-rich Low_complexity Low_complexity 2 61 0 2068 155 0 0 chrX 5081450 5081759 -157518171 - AluJo SINE Alu -3 309 1 225 278 81 40 chrX 5082105 5082303 -157517627 + L1M4 LINE L1 4741 4946 -1200 1126 231 4 16 chrX 5082317 5082568 -157517362 + AluJo SINE Alu 41 288 -24 1683 112 28 17 chrX 5083104 5083391 -157516539 + THE1C LTR MaLR 86 375 0 385 242 91 0 chrX 5083404 5083503 -157516427 - MER3 DNA MER1_type -101 108 1 372 222 94 26 chrX 5083506 5083623 -157516307 - L2 LINE L2 0 3313 3189 386 176 0 0 chrX 5083794 5083868 -157516062 + MADE1 DNA Mariner 7 80 0 198 263 147 21 chrX 5083904 5084000 -157515930 - MIR SINE MIR -37 171 63 24 32 0 0 chrX 5084787 5084818 -157515112 + AT_rich Low_complexity Low_complexity 1 31 0 2217 59 42 3 chrX 5085391 5085680 -157514250 - AluY SINE Alu -11 300 1 1759 234 59 25 chrX 5086759 5087247 -157512683 - MLT1D LTR MaLR 0 505 1 282 301 29 10 chrX 5087629 5087732 -157512198 - MIR3 SINE MIR -17 191 87 2170 119 23 52 chrX 5088429 5088815 -157511115 + THE1C LTR MaLR 1 375 0 397 320 85 7 chrX 5088887 5089040 -157510890 - MIR SINE MIR -50 212 48 362 214 15 20 chrX 5089866 5090063 -157509867 + GA-rich Low_complexity Low_complexity 1 195 0 653 183 0 9 chrX 5090083 5090344 -157509586 + FLAM_C SINE Alu 1 260 0 189 0 0 0 chrX 5090462 5090483 -157509447 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2227 81 3 0 chrX 5090491 5090774 -157509156 - AluY SINE Alu -27 284 1 199 359 0 0 chrX 5090979 5091043 -157508887 + L2 LINE L2 3209 3272 0 3261 82 22 2 chrX 5091866 5092318 -157507612 - L1PA10 LINE L1 -13 6155 5695 1817 88 0 0 chrX 5092431 5092659 -157507271 - AluSc SINE Alu -9 300 73 387 217 66 0 chrX 5092759 5092865 -157507065 + L1MB8 LINE L1 6060 6172 -6 231 180 0 0 chrX 5092868 5092878 -157507052 + (TA)n Simple_repeat Simple_repeat 1 10 -40 3001 58 3 0 chrX 5092878 5093259 -157506671 - L1PA7 LINE L1 -7 6147 5766 231 180 0 0 chrX 5093259 5093298 -157506632 + (TA)n Simple_repeat Simple_repeat 9 50 0 402 327 105 34 chrX 5093565 5093947 -157505983 - L1ME LINE L1 -446 5675 5267 27 29 0 0 chrX 5094521 5094555 -157505375 + AT_rich Low_complexity Low_complexity 1 34 0 250 83 0 0 chrX 5094971 5095007 -157504923 - MADE1 DNA Mariner 0 80 45 325 292 42 31 chrX 5095138 5095330 -157504600 + L1ME LINE L1 5064 5257 -889 349 336 16 8 chrX 5095337 5095581 -157504349 + L1ME LINE L1 5263 5508 -656 703 239 24 24 chrX 5095588 5095797 -157504133 + MER3 DNA MER1_type 1 209 0 531 194 78 0 chrX 5095914 5096017 -157503913 + FRAM SINE Alu 45 155 -21 1209 196 158 117 chrX 5096872 5097685 -157502245 + LTR1B LTR ERV1 1 1020 0 249 98 0 0 chrX 5097702 5097743 -157502187 + (TG)n Simple_repeat Simple_repeat 1 41 0 922 98 50 7 chrX 5098012 5098278 -157501652 + CT-rich Low_complexity Low_complexity 1 277 0 1025 139 63 0 chrX 5098418 5098576 -157501354 - AluJb SINE Alu -4 308 141 499 175 19 62 chrX 5098693 5098853 -157501077 + L1P LINE L1 3840 3992 -2154 607 288 58 10 chrX 5099034 5099239 -157500691 - MER58A DNA MER1_type -9 215 1 328 267 65 65 chrX 5099252 5099499 -157500431 + L1M4 LINE L1 2789 3035 -3111 1320 223 3 3 chrX 5099546 5099833 -157500097 + AluY SINE Alu 1 287 -24 1339 182 171 62 chrX 5200113 5200568 -157399362 + MLT1D LTR MaLR 1 505 0 1515 220 73 45 chrX 5201140 5201603 -157398327 + MER39 LTR ERV1 232 707 0 240 303 41 78 chrX 5201754 5201998 -157397932 + L2 LINE L2 2268 2502 -812 1641 180 14 17 chrX 5202023 5202312 -157397618 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 5202315 5202340 -157397590 + AT_rich Low_complexity Low_complexity 1 25 0 274 404 18 18 chrX 5202570 5202795 -157397135 + L2 LINE L2 2560 2784 -530 871 144 0 0 chrX 5202834 5202952 -157396978 + FLAM_C SINE Alu 1 118 -25 2034 133 10 0 chrX 5203135 5203435 -157396495 + AluSx SINE Alu 1 303 -9 2135 161 31 3 chrX 5203664 5204019 -157395911 + MER47A DNA MER2_type 1 365 -1 1700 171 22 0 chrX 5204286 5204561 -157395369 - AluJb SINE Alu -31 281 1 238 205 24 0 chrX 5204682 5204765 -157395165 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 519 128 35 37 chrX 5204864 5205134 -157394796 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 246 194 83 0 chrX 5205294 5205366 -157394564 + L1MC4 LINE L1 6618 6695 -1347 180 0 0 0 chrX 5205366 5205386 -157394544 + (TG)n Simple_repeat Simple_repeat 2 21 0 264 230 45 126 chrX 5205459 5205681 -157394249 - L1ME4a LINE L1 -157 5964 5761 1626 201 3 7 chrX 5207009 5207303 -157392627 - AluJo SINE Alu -19 293 1 846 178 0 0 chrX 5207303 5207438 -157392492 - AluJo SINE Alu -177 135 1 668 256 22 44 chrX 5207897 5208157 -157391773 + MLT1E LTR MaLR 13 233 -391 1903 122 32 10 chrX 5208166 5208536 -157391394 - L1PB4 LINE L1 -598 5558 5184 * 3682 123 6 10 chrX 5208535 5209128 -157390802 + L1PB4 LINE L1 5565 6154 -2 726 269 31 59 chrX 5209160 5209446 -157390484 + MLT1E LTR MaLR 206 483 -110 1894 130 93 17 chrX 5209451 5209804 -157390126 - MLT1B LTR MaLR -7 383 4 594 177 9 18 chrX 5209808 5209921 -157390009 + MLT1E LTR MaLR 479 590 -3 1374 157 8 0 chrX 5210236 5210478 -157389452 + L1M2 LINE L1 5550 5793 -519 322 279 47 0 chrX 5210513 5210599 -157389331 + L1MC4 LINE L1 6614 6703 -1339 611 163 42 226 chrX 5210710 5210840 -157389090 - MLT1A1 LTR MaLR -63 311 159 518 100 0 25 chrX 5210840 5210920 -157389010 - MADE1 DNA Mariner 0 80 3 611 163 42 226 chrX 5210920 5211170 -157388760 - MLT1A1 LTR MaLR -215 159 1 3279 143 98 22 chrX 5211805 5212224 -157387706 - Tigger3(Golem) DNA MER2_type 0 3029 2535 2057 120 40 7 chrX 5212224 5212525 -157387405 - AluSx SINE Alu -1 311 1 3279 143 98 22 chrX 5212525 5212799 -157387131 - Tigger3(Golem) DNA MER2_type -494 2535 2283 579 164 10 0 chrX 5212792 5212896 -157387034 - Tigger3(Golem) DNA MER2_type -2924 105 1 * 1508 243 40 50 chrX 5212933 5213452 -157386478 - LTR40a LTR ERVL 0 519 6 252 149 0 0 chrX 5214357 5214404 -157385526 + (GA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chrX 5214707 5214735 -157385195 + AT_rich Low_complexity Low_complexity 1 28 0 2144 235 5 43 chrX 5214954 5215512 -157384418 + MLT1F LTR MaLR 6 542 0 2233 146 22 3 chrX 5215731 5216088 -157383842 - THE1B LTR MaLR 0 364 1 276 198 85 38 chrX 5216314 5216420 -157383510 + L1ME LINE L1 5713 5823 -298 1762 176 7 3 chrX 5216461 5216751 -157383179 - AluJo SINE Alu -21 291 1 1760 75 9 0 chrX 5217297 5217525 -157382405 + AluSp SINE Alu 76 305 -8 274 327 9 19 chrX 5219815 5219922 -157380008 - MIR SINE MIR -57 205 100 209 229 0 0 chrX 5219991 5220039 -157379891 + MIR SINE MIR 106 153 -109 290 331 153 0 chrX 5220056 5220180 -157379750 - MIR SINE MIR -109 153 11 1963 126 0 20 chrX 5220268 5220558 -157379372 + AluSq SINE Alu 1 110 -203 363 23 0 0 chrX 5220558 5220602 -157379328 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 1963 126 0 20 chrX 5220602 5220803 -157379127 + AluSq SINE Alu 110 313 0 190 369 117 0 chrX 5221985 5222096 -157377834 + MIR SINE MIR 16 139 -69 1145 141 0 18 chrX 5222651 5222821 -157377109 + AluJo SINE Alu 1 167 -145 555 308 28 34 chrX 5223774 5223890 -157376040 - L1ME3A LINE L1 -33 6137 6022 2377 141 3 3 chrX 5223890 5224265 -157375665 - THE1C LTR MaLR 0 375 1 555 308 28 34 chrX 5224265 5224502 -157375428 - L1ME3A LINE L1 -148 6022 5786 1084 275 65 14 chrX 5225153 5225586 -157374344 - L1ME3A LINE L1 -8 6162 5708 244 175 70 0 chrX 5225588 5225645 -157374285 - MSTA LTR MaLR 0 428 368 23 0 0 0 chrX 5225669 5225692 -157374238 + AT_rich Low_complexity Low_complexity 1 23 0 2271 130 10 55 chrX 5225696 5226096 -157373834 - MSTA LTR MaLR -46 382 1 688 267 6 68 chrX 5226097 5226449 -157373481 - L1ME3A LINE L1 -461 5709 5380 367 98 0 0 chrX 5226450 5226501 -157373429 - MSTB LTR MaLR 0 426 376 1339 167 18 13 chrX 5226503 5226730 -157373200 - AluJo SINE Alu -84 228 1 334 301 27 48 chrX 5229255 5229401 -157370529 - MIR SINE MIR 0 262 120 2212 130 16 19 chrX 5229530 5229906 -157370024 + THE1C LTR MaLR 1 375 0 245 143 0 0 chrX 5230004 5230039 -157369891 - MER5A DNA MER1_type 0 189 155 1172 244 24 3 chrX 5230048 5230339 -157369591 - MER58B DNA MER1_type -2 339 43 2805 128 15 2 chrX 5230345 5230806 -157369124 - MER41B LTR ERV1 0 635 169 348 228 26 26 chrX 5230976 5231090 -157368840 + Charlie8 DNA MER1_type 77 190 -2227 1859 132 140 13 chrX 5231157 5231535 -157368395 - MSTA LTR MaLR 0 428 3 591 225 42 37 chrX 5231692 5231883 -157368047 + Tigger2 DNA MER2_type 1 192 -2526 696 187 22 14 chrX 5232111 5232250 -157367680 + Tigger2 DNA MER2_type 2579 2718 0 721 170 24 48 chrX 5232296 5232461 -157367469 - MLT1A1 LTR MaLR 0 365 217 4445 139 111 98 chrX 5232461 5233985 -157365945 - pTR5 LTR ERV1 -8 2430 714 444 209 122 0 chrX 5233996 5234111 -157365819 - MLT1A1 LTR MaLR -218 147 19 301 329 44 29 chrX 5234122 5234259 -157365671 - MIR SINE MIR -104 158 20 226 210 43 29 chrX 5234884 5235022 -157364908 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 284 206 0 29 chrX 5235106 5235242 -157364688 + (TA)n Simple_repeat Simple_repeat 1 132 0 1780 168 46 0 chrX 5235245 5235573 -157364357 - MER7A DNA MER2_type -5 341 1 2359 121 84 74 chrX 5235652 5236243 -157363687 - MER4B LTR ERV1 0 779 26 256 337 22 0 chrX 5236325 5236417 -157363513 - MIR SINE MIR -104 158 65 348 178 28 0 chrX 5236477 5236584 -157363346 + (TA)n Simple_repeat Simple_repeat 2 111 0 231 146 0 0 chrX 5237148 5237189 -157362741 + (T)n Simple_repeat Simple_repeat 1 41 0 1520 180 6 40 chrX 5238509 5238836 -157361094 + LTR8 LTR ERV1 1 316 -375 1163 104 0 0 chrX 5238869 5239032 -157360898 + LTR8 LTR ERV1 526 688 -3 1206 223 177 9 chrX 5239437 5240003 -157359927 + L1ME2 LINE L1 5198 5851 -313 780 234 9 22 chrX 5240029 5240255 -157359675 + L1ME2 LINE L1 5923 6145 -19 771 124 99 0 chrX 5240543 5240684 -157359246 + FLAM_C SINE Alu 1 153 0 2472 46 23 0 chrX 5241678 5241982 -157357948 - AluY SINE Alu 0 311 1 527 83 83 12 chrX 5242043 5242211 -157357719 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 493 73 85 24 chrX 5242224 5242389 -157357541 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 438 259 83 105 chrX 5242389 5242941 -157356989 + MER34 LTR ERV1 1 540 -2 587 215 0 6 chrX 5242952 5243115 -157356815 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 2021 127 34 3 chrX 5243610 5243902 -157356028 + AluJo SINE Alu 6 306 -6 218 319 21 106 chrX 5243906 5244047 -157355883 + MIR3 SINE MIR 3 131 -77 2224 117 3 0 chrX 5244541 5244839 -157355091 + AluSx SINE Alu 1 299 -13 24 0 0 0 chrX 5246137 5246161 -157353769 + AT_rich Low_complexity Low_complexity 1 24 0 1289 202 8 4 chrX 5246175 5246413 -157353517 - AluJb SINE Alu -73 239 1 359 167 97 0 chrX 5246520 5246592 -157353338 - MER5B DNA MER1_type 0 178 100 273 143 0 18 chrX 5247003 5247059 -157352871 - MLT2B3 LTR ERVL 0 554 500 201 39 0 0 chrX 5247060 5247086 -157352844 + (GA)n Simple_repeat Simple_repeat 1 26 0 336 77 0 0 chrX 5247100 5247152 -157352778 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2391 83 0 0 chrX 5247154 5247455 -157352475 + AluY SINE Alu 4 304 -7 364 128 11 69 chrX 5247509 5247697 -157352233 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 569 89 13 68 chrX 5247742 5248124 -157351806 + (TAGA)n Simple_repeat Simple_repeat 1 360 0 2265 228 23 2 chrX 5248124 5248653 -157351277 - MLT2B3 LTR ERVL -19 506 1 1681 163 8 73 chrX 5248907 5249306 -157350624 + L1MB3 LINE L1 5767 6139 -44 846 180 0 0 chrX 5249313 5249452 -157350478 + FRAM SINE Alu 13 151 -25 308 21 0 21 chrX 5249461 5249508 -157350422 + L1MB4 LINE L1 6128 6173 -7 427 226 32 106 chrX 5249762 5250145 -157349785 + MER34 LTR ERV1 216 542 0 3492 109 25 15 chrX 5250253 5250775 -157349155 - MER1A DNA MER1_type 0 527 1 354 370 68 48 chrX 5252080 5252461 -157347469 + L2 LINE L2 2681 3063 -209 2138 133 3 0 chrX 5252816 5253124 -157346806 + AluSx SINE Alu 1 309 -3 3537 143 11 24 chrX 5254024 5254686 -157345244 - MER39B LTR ERV1 0 653 1 32 26 0 0 chrX 5255095 5255134 -157344796 + AT_rich Low_complexity Low_complexity 1 39 0 1049 156 0 0 chrX 5255146 5255300 -157344630 - AluSg/x SINE Alu -32 278 125 2324 192 36 2 chrX 5255417 5255774 -157344156 + L1MA9 LINE L1 5797 6177 -135 234 0 0 0 chrX 5255774 5255800 -157344130 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2324 192 36 2 chrX 5255800 5255936 -157343994 + L1MA9 LINE L1 6177 6307 -5 278 304 35 26 chrX 5256781 5257011 -157342919 + L1ME LINE L1 4488 4719 -1427 449 326 113 53 chrX 5257022 5257274 -157342656 + L1ME LINE L1 4759 4995 -1169 2062 119 10 19 chrX 5257274 5257584 -157342346 + AluSx SINE Alu 2 308 -4 449 326 113 53 chrX 5257584 5258157 -157341773 + L1ME LINE L1 4995 5634 -530 1255 140 8 86 chrX 5258326 5258569 -157341361 + AluJo SINE Alu 86 309 -3 427 161 0 86 chrX 5258695 5258776 -157341154 + FLAM_A SINE Alu 37 110 -32 396 0 0 0 chrX 5258782 5258826 -157341104 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 189 0 0 0 chrX 5259611 5259632 -157340298 + (A)n Simple_repeat Simple_repeat 1 21 0 1728 153 0 0 chrX 5260365 5260724 -157339206 - L1PB4 LINE L1 -19 6137 5707 * 3545 206 37 50 chrX 5260714 5261692 -157338238 + L1MA5 LINE L1 5336 6300 0 21 36 0 0 chrX 5261934 5261962 -157337968 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chrX 5262489 5262522 -157337408 + AT_rich Low_complexity Low_complexity 1 33 0 1754 128 36 32 chrX 5263078 5263359 -157336571 - THE1B LTR MaLR 0 364 83 697 122 0 0 chrX 5263360 5263458 -157336472 + AluJb SINE Alu 11 108 -204 276 100 0 0 chrX 5263461 5263501 -157336429 + (CA)n Simple_repeat Simple_repeat 2 41 0 430 253 0 0 chrX 5263637 5263724 -157336206 - MIR SINE MIR -103 159 73 2170 217 35 2 chrX 5263733 5264217 -157335713 - L1MC3 LINE L1 -10 7775 7276 496 156 31 10 chrX 5264217 5264313 -157335617 + MER4A LTR ERV1 1 98 -566 1970 122 3 22 chrX 5264313 5264665 -157335265 + MER4A LTR ERV1 261 664 0 879 72 171 40 chrX 5264670 5264693 -157335237 + MER4A-int LTR ERV1 3 22 -6576 3647 92 17 31 chrX 5264693 5265213 -157334717 + LTR10D LTR ERV1 1 513 0 879 72 171 40 chrX 5265213 5265341 -157334589 + MER4A-int LTR ERV1 22 174 -6424 394 227 11 0 chrX 5265341 5265429 -157334501 - L1MC3 LINE L1 -503 7282 7194 232 233 0 33 chrX 5265433 5265493 -157334437 - MLT1F1 LTR MaLR -443 124 67 249 298 12 12 chrX 5265741 5265825 -157334105 - L2 LINE L2 -211 3061 2978 1688 179 0 11 chrX 5266167 5266482 -157333448 - AluJo SINE Alu 0 312 1 276 216 72 54 chrX 5266723 5266834 -157333096 + L1MC/D LINE L1 5648 5760 -2048 507 178 0 0 chrX 5266834 5266935 -157332995 + GA-rich Low_complexity Low_complexity 2 102 0 575 171 6 12 chrX 5267651 5267811 -157332119 + GA-rich Low_complexity Low_complexity 1 159 0 356 279 154 48 chrX 5268434 5268764 -157331166 - L2 LINE L2 -388 2926 2562 2354 114 0 0 chrX 5268880 5269187 -157330743 - AluSx SINE Alu -5 307 1 1656 157 27 13 chrX 5269294 5269594 -157330336 + L1MA7 LINE L1 5985 6288 -3 1508 147 47 36 chrX 5269600 5269879 -157330051 + AluJo SINE Alu 1 282 -30 24 32 0 0 chrX 5269879 5269910 -157330020 + AT_rich Low_complexity Low_complexity 1 31 0 1266 199 22 36 chrX 5270901 5271177 -157328753 + AluJo SINE Alu 41 312 0 893 208 99 121 chrX 5271410 5271603 -157328327 + MLT1D LTR MaLR 3 199 -306 3297 148 10 2 chrX 5271603 5272118 -157327812 + L1PA15 LINE L1 5634 6152 -13 893 208 99 121 chrX 5272118 5272438 -157327492 + MLT1D LTR MaLR 199 505 0 689 239 71 49 chrX 5272440 5272798 -157327132 - L2 LINE L2 -172 3141 2770 321 200 29 0 chrX 5272813 5272883 -157327047 - MER20 DNA MER1_type -71 148 77 386 313 79 75 chrX 5272898 5273176 -157326754 - L2 LINE L2 -586 2728 2450 588 255 6 25 chrX 5273493 5273650 -157326280 + MER5B DNA MER1_type 2 155 -23 724 230 141 5 chrX 5273694 5273885 -157326045 + MER20 DNA MER1_type 2 218 -1 972 184 22 83 chrX 5274531 5274759 -157325171 + MER20 DNA MER1_type 5 218 -1 443 250 87 0 chrX 5275173 5275277 -157324653 - MER81 DNA DNA 0 114 2 2269 103 0 3 chrX 5275986 5276286 -157323644 + AluSx SINE Alu 1 299 -13 237 180 0 0 chrX 5276547 5276597 -157323333 + (CATA)n Simple_repeat Simple_repeat 3 52 0 234 152 0 0 chrX 5276704 5276737 -157323193 - Alu SINE Alu -16 117 85 348 83 0 0 chrX 5277560 5277608 -157322322 + (GA)n Simple_repeat Simple_repeat 1 48 0 258 32 0 0 chrX 5278000 5278031 -157321899 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1945 169 16 27 chrX 5278895 5279157 -157320773 - MLT1A1 LTR MaLR -2 363 105 3750 84 2 0 chrX 5279157 5279609 -157320321 - MLT2A2 LTR ERVL 0 453 1 1945 169 16 27 chrX 5279609 5279713 -157320217 - MLT1A1 LTR MaLR -260 105 1 1645 153 16 39 chrX 5280199 5280507 -157319423 - AluJb SINE Alu -11 301 1 1426 182 87 0 chrX 5281491 5281777 -157318153 + AluJo SINE Alu 1 311 -1 468 270 16 24 chrX 5283007 5283133 -157316797 + MER94 DNA DNA 10 134 0 2623 102 25 25 chrX 5283255 5283619 -157316311 - THE1B LTR MaLR 0 364 1 625 269 8 95 chrX 5283772 5283797 -157316133 + LTR52 LTR ERVL 1 27 -394 1712 182 0 10 chrX 5283797 5284094 -157315836 - AluJo SINE Alu -18 294 1 625 269 8 95 chrX 5284094 5284310 -157315620 + LTR52 LTR ERVL 27 221 -200 1596 254 91 9 chrX 5284861 5285310 -157314620 - MLT1E LTR MaLR -12 581 96 634 223 153 0 chrX 5285491 5285693 -157314237 - MER106A DNA MER1_type 0 236 4 598 329 40 0 chrX 5285696 5285918 -157314012 + MIR SINE MIR 20 250 -12 193 209 30 0 chrX 5286340 5286407 -157313523 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 338 294 0 9 chrX 5286425 5286534 -157313396 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 560 162 0 58 chrX 5286534 5286725 -157313205 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 477 249 7 12 chrX 5286793 5287241 -157312689 + (TCCA)n Simple_repeat Simple_repeat 1 445 0 242 217 0 0 chrX 5288400 5288446 -157311484 - L3b LINE CR1 -196 1387 1342 2807 97 19 13 chrX 5288584 5288957 -157310973 + THE1C LTR MaLR 1 375 0 306 164 0 66 chrX 5289282 5289343 -157310587 - MER116 DNA Mariner -1 79 23 1188 178 5 0 chrX 5289722 5289949 -157309981 + AluJo SINE Alu 87 314 0 732 207 67 0 chrX 5289949 5290113 -157309817 - MLT1D LTR MaLR -330 175 1 1565 176 40 29 chrX 5290287 5290565 -157309365 - AluJo SINE Alu -31 281 1 1592 210 36 15 chrX 5290567 5290896 -157309034 + MLT1D LTR MaLR 169 504 -1 874 122 0 46 chrX 5290974 5291105 -157308825 + FLAM_C SINE Alu 1 125 -8 27 0 0 0 chrX 5291105 5291132 -157308798 + AT_rich Low_complexity Low_complexity 1 27 0 8087 98 6 15 chrX 5291161 5292238 -157307692 + MER11C LTR ERVK 1 1067 -4 288 242 15 15 chrX 5292568 5292634 -157307296 + MER81 DNA DNA 2 67 -47 204 291 23 47 chrX 5292769 5292855 -157307075 - L2 LINE L2 0 3272 3189 257 222 0 0 chrX 5292944 5292998 -157306932 + L1MC4 LINE L1 6650 6703 -1339 220 186 51 23 chrX 5293149 5293372 -157306558 + (TA)n Simple_repeat Simple_repeat 1 229 0 * 307 220 38 23 chrX 5293354 5293486 -157306444 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 183 286 18 0 chrX 5294369 5294425 -157305505 + MIR SINE MIR 77 133 -129 222 286 98 38 chrX 5294784 5294917 -157305013 + MIR SINE MIR 29 169 -93 319 221 0 15 chrX 5295068 5295136 -157304794 + MER5A DNA MER1_type 14 80 -109 861 143 0 15 chrX 5295143 5295276 -157304654 + FRAM SINE Alu 24 154 -22 569 139 7 131 chrX 5295276 5295413 -157304517 + MER5A DNA MER1_type 60 179 -10 22 0 0 0 chrX 5295719 5295741 -157304189 + AT_rich Low_complexity Low_complexity 1 22 0 1815 171 0 7 chrX 5295741 5296050 -157303880 - AluJb SINE Alu -5 307 1 880 248 103 31 chrX 5297113 5297649 -157302281 + MLT1E1 LTR MaLR 1 654 0 2823 102 3 3 chrX 5297828 5298192 -157301738 + THE1B LTR MaLR 1 364 0 2586 130 75 0 chrX 5298534 5298935 -157300995 - MSTB1 LTR MaLR -1 431 1 1659 211 18 46 chrX 5299324 5299760 -157300170 - LTR37A LTR ERV1 -2 424 1 1772 164 0 35 chrX 5299891 5300202 -157299728 + AluJo SINE Alu 1 300 -12 2333 208 32 75 chrX 5300255 5300920 -157299010 - MER92B LTR ERV1 0 636 1 2935 122 9 14 chrX 5301397 5301833 -157298097 + MER57B LTR ERV1 1 434 0 1128 201 20 108 chrX 5302087 5302455 -157297475 - MLT1A1 LTR MaLR -1 625 280 2222 106 0 7 chrX 5302455 5302756 -157297174 - AluSx SINE Alu -13 299 1 1128 201 20 108 chrX 5302756 5302993 -157296937 - MLT1A1 LTR MaLR -346 280 24 666 232 38 38 chrX 5303001 5303186 -157296744 - MLT1E2 LTR MaLR -194 432 248 226 287 74 74 chrX 5303185 5303415 -157296515 + MARNA DNA Mariner 341 570 -16 * 756 212 55 84 chrX 5303518 5303862 -157296068 + LTR37A LTR ERV1 27 360 -66 1061 260 157 54 chrX 5304407 5304941 -157294989 + MER69 DNA AcHobo 213 801 -1725 385 264 31 16 chrX 5304942 5305071 -157294859 + MER69 DNA AcHobo 2017 2147 -379 342 215 0 0 chrX 5305214 5305279 -157294651 + MER92C LTR ERV1 1 65 -489 3248 104 18 2 chrX 5305296 5305739 -157294191 - L1PA16 LINE L1 0 6166 5717 308 235 15 0 chrX 5306001 5306069 -157293861 + MER92C LTR ERV1 484 552 -2 1123 137 5 58 chrX 5306964 5307154 -157292776 + AluJb SINE Alu 107 286 -26 245 250 122 71 chrX 5307158 5307354 -157292576 + LTR48 LTR ERV1 575 780 -7 1253 201 79 0 chrX 5307475 5307729 -157292201 + AluJb SINE Alu 1 274 -38 333 0 0 0 chrX 5307751 5307788 -157292142 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 387 186 0 0 chrX 5307912 5307982 -157291948 - L1MB8 LINE L1 -1 6177 6108 1035 170 18 50 chrX 5307995 5308213 -157291717 - L1MB2 LINE L1 -2 6169 5959 216 0 0 0 chrX 5308214 5308238 -157291692 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1229 24 30 6 chrX 5308248 5308416 -157291514 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2154 108 0 0 chrX 5308421 5308698 -157291232 - AluSx SINE Alu -35 277 1 1331 185 39 8 chrX 5309096 5309355 -157290575 + L1MB2 LINE L1 5587 5853 -318 368 177 8 32 chrX 5309531 5309607 -157290323 + MER21B LTR ERV1 34 136 -469 448 268 51 22 chrX 5309646 5309784 -157290146 + MER21B LTR ERV1 98 239 -624 836 178 16 0 chrX 5309887 5310016 -157289914 - FLAM_C SINE Alu -11 132 2 853 266 83 66 chrX 5310179 5310407 -157289523 - L1ME2 LINE L1 -19 6145 5922 683 216 61 17 chrX 5310407 5310588 -157289342 - MER53 DNA DNA 0 189 1 853 266 83 66 chrX 5310588 5310841 -157289089 - L1ME2 LINE L1 -242 5922 5656 264 188 34 17 chrX 5310845 5311021 -157288909 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 363 117 49 31 chrX 5311032 5311194 -157288736 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 441 113 21 21 chrX 5311244 5311341 -157288589 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 271 320 160 16 chrX 5311375 5311762 -157288168 + L2 LINE L2 2451 2893 -421 2234 92 0 0 chrX 5311763 5312083 -157287847 - AluSx SINE Alu 0 320 1 1916 153 0 7 chrX 5312369 5312670 -157287260 - AluJb SINE Alu -13 299 1 2005 174 26 3 chrX 5312671 5313015 -157286915 - MER47A DNA MER2_type -6 360 9 210 261 15 0 chrX 5314055 5314120 -157285810 + GA-rich Low_complexity Low_complexity 1 66 0 223 191 0 0 chrX 5314625 5314667 -157285263 + T-rich Low_complexity Low_complexity 1 42 0 219 351 54 0 chrX 5314822 5314933 -157284997 + L2 LINE L2 3197 3313 0 1664 232 27 2 chrX 5316934 5317392 -157282538 + MLT2B1 LTR ERVL 3 515 0 3451 133 27 2 chrX 5317583 5318109 -157281821 - MER41C LTR ERV1 -2 552 14 2182 107 0 0 chrX 5318492 5318803 -157281127 - AluSx SINE Alu 0 312 2 458 184 149 0 chrX 5319201 5319288 -157280642 - MER20 DNA MER1_type 0 219 120 201 74 0 0 chrX 5319932 5319959 -157279971 + (TG)n Simple_repeat Simple_repeat 2 28 0 1981 118 76 0 chrX 5320028 5320317 -157279613 - AluSx SINE Alu -1 311 1 232 175 19 155 chrX 5320836 5320939 -157278991 + L1MC4 LINE L1 6615 6703 -1339 202 162 27 0 chrX 5320940 5320977 -157278953 + (TA)n Simple_repeat Simple_repeat 1 38 0 1854 144 10 10 chrX 5321141 5321440 -157278490 - AluJo SINE Alu -9 303 5 463 303 37 31 chrX 5324117 5324440 -157275490 + L1ME4a LINE L1 5600 5924 -197 601 184 18 110 chrX 5324440 5324539 -157275391 - MER5A DNA MER1_type -28 161 81 1850 158 10 7 chrX 5324539 5324842 -157275088 - AluSx SINE Alu -8 304 1 601 184 18 110 chrX 5324842 5324905 -157275025 - MER5A DNA MER1_type -108 81 14 2702 185 53 42 chrX 5325038 5325116 -157274814 + L1MB5 LINE L1 5541 5617 -557 1762 165 28 92 chrX 5325116 5325516 -157274414 - MLT1A2 LTR MaLR 0 374 1 2702 185 53 42 chrX 5325516 5325564 -157274366 + L1MB5 LINE L1 5617 5663 -511 324 70 0 0 chrX 5325564 5325607 -157274323 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 54 54 0 chrX 5325606 5325643 -157274287 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 * 2702 185 53 42 chrX 5325607 5326141 -157273789 + L1MB5 LINE L1 5663 6173 -1 249 308 77 29 chrX 5326141 5326245 -157273685 + MER5B DNA MER1_type 61 169 -9 312 265 0 12 chrX 5326394 5326477 -157273453 + MER5A DNA MER1_type 13 94 -95 2132 200 48 30 chrX 5326726 5326934 -157272996 - MER66B LTR ERV1 0 486 283 2024 134 7 0 chrX 5326934 5327232 -157272698 - AluSx SINE Alu -11 301 2 2132 200 48 30 chrX 5327232 5327497 -157272433 - MER66B LTR ERV1 -203 283 4 986 221 160 19 chrX 5328178 5328441 -157271489 - AluSg SINE Alu 0 300 1 1013 220 77 10 chrX 5329143 5329352 -157270578 + MER58A DNA MER1_type 2 224 0 193 29 29 29 chrX 5330578 5330613 -157269317 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 729 212 0 14 chrX 5330705 5330851 -157269079 - MER58B DNA MER1_type -1 340 197 328 266 261 5 chrX 5332523 5332730 -157267200 - MIR SINE MIR 0 262 3 1093 202 5 14 chrX 5332742 5332960 -157266970 - MER20 DNA MER1_type -3 216 1 271 246 16 0 chrX 5332960 5333021 -157266909 + MER116 DNA Mariner 4 65 -15 421 114 51 0 chrX 5334164 5334243 -157265687 - L1MD2 LINE L1 0 6359 6277 1075 227 18 0 chrX 5334253 5334473 -157265457 + L1MD1 LINE L1 5918 6141 -101 * 3456 197 67 9 chrX 5334470 5335313 -157264617 - L1M4 LINE L1 -4127 2517 1533 313 262 60 99 chrX 5335689 5335761 -157264169 - L1 LINE L1 -1672 4474 4401 1796 145 0 48 chrX 5335761 5336100 -157263830 - AluJb SINE Alu 0 312 6 313 262 60 99 chrX 5336100 5336279 -157263651 - L1 LINE L1 -1745 4401 4233 326 286 38 0 chrX 5336384 5336517 -157263413 - MER103 DNA DNA -4 162 25 1088 173 72 61 chrX 5337494 5337696 -157262234 - MER58B DNA MER1_type -2080 340 133 1956 131 14 0 chrX 5337696 5337978 -157261952 - AluSx SINE Alu -21 291 6 1088 173 72 61 chrX 5337978 5338053 -157261877 - MER58B DNA MER1_type -2287 133 60 305 284 37 9 chrX 5338100 5338209 -157261721 + L1ME4a LINE L1 5808 5919 -202 1670 164 3 16 chrX 5338881 5339185 -157260745 - AluJb SINE Alu -12 300 1 404 347 46 6 chrX 5339922 5340040 -157259890 - MIR SINE MIR -34 228 99 261 0 0 0 chrX 5340040 5340069 -157259861 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 404 347 46 6 chrX 5340069 5340123 -157259807 - MIR SINE MIR -163 99 49 1278 199 14 0 chrX 5341442 5341658 -157258272 + MER20 DNA MER1_type 1 219 0 1870 141 17 20 chrX 5342612 5342910 -157257020 - AluJb SINE Alu -15 297 1 880 184 60 0 chrX 5344487 5344655 -157255275 - L1MB7 LINE L1 0 6184 6007 1425 177 8 0 chrX 5344678 5344938 -157254992 - L1MB7 LINE L1 -352 5826 5565 292 253 110 34 chrX 5345019 5345165 -157254765 + L2 LINE L2 1882 2038 -1276 262 286 43 0 chrX 5345641 5345711 -157254219 + L2 LINE L2 3196 3268 -4 227 164 77 10 chrX 5345717 5345744 -157254186 + (TA)n Simple_repeat Simple_repeat 1 25 -86 2715 233 51 19 chrX 5345744 5346376 -157253554 + MER82 DNA MER2_type 1 652 -1 227 164 77 10 chrX 5346376 5346452 -157253478 + (TA)n Simple_repeat Simple_repeat 25 111 0 * 276 185 33 82 chrX 5346378 5346562 -157253368 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 281 241 51 6 chrX 5346437 5346595 -157253335 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2216 118 14 35 chrX 5346632 5346978 -157252952 - THE1B LTR MaLR 0 364 26 6086 124 2 5 chrX 5346978 5348056 -157251874 + L1PB1 LINE L1 5019 6094 -57 259 163 0 0 chrX 5348074 5348117 -157251813 - THE1B LTR MaLR -332 43 1 225 279 13 0 chrX 5348128 5348207 -157251723 + (TA)n Simple_repeat Simple_repeat 1 80 0 397 329 83 45 chrX 5348303 5348701 -157251229 + L2 LINE L2 2365 2777 -537 2347 89 0 10 chrX 5349885 5350232 -157249698 - AluY SINE Alu 0 344 1 237 33 0 0 chrX 5350672 5350702 -157249228 + (CA)n Simple_repeat Simple_repeat 1 30 0 5808 74 4 1 chrX 5353969 5354683 -157245247 + L1PA10 LINE L1 5450 6165 -3 1764 180 0 3 chrX 5355145 5355428 -157244502 + AluJo SINE Alu 1 282 -30 225 0 0 0 chrX 5355435 5355460 -157244470 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 254 302 78 31 chrX 5356409 5356538 -157243392 + MIR SINE MIR 78 212 -50 360 308 52 28 chrX 5356612 5356862 -157243068 - L1ME LINE L1 -297 5824 5569 353 286 43 9 chrX 5357929 5358064 -157241866 - L1MD2 LINE L1 0 6242 6106 1689 141 17 44 chrX 5358271 5358603 -157241327 - AluJo SINE Alu 0 312 1 1106 213 15 0 chrX 5358609 5358811 -157241119 - MER58A DNA MER1_type -15 209 5 1909 127 40 3 chrX 5358943 5359243 -157240687 + AluSx SINE Alu 1 311 -1 276 100 0 0 chrX 5359243 5359283 -157240647 + (GA)n Simple_repeat Simple_repeat 1 40 0 239 132 38 0 chrX 5359418 5359471 -157240459 + (CCTA)n Simple_repeat Simple_repeat 3 57 0 24 67 0 0 chrX 5559616 5559661 -157040269 + AT_rich Low_complexity Low_complexity 1 45 0 2450 35 3 7 chrX 5559721 5560006 -157039924 - AluY SINE Alu -21 290 7 315 27 0 0 chrX 5560045 5560082 -157039848 - MLT1D LTR MaLR -9 617 581 583 180 148 8 chrX 5560105 5560233 -157039697 - MLT1D LTR MaLR -118 387 242 3137 230 51 33 chrX 5560247 5561450 -157038480 - L1M4c LINE L1 -3113 3269 2005 261 0 0 0 chrX 5562432 5562461 -157037469 + (CA)n Simple_repeat Simple_repeat 2 30 0 1836 138 3 43 chrX 5562469 5562774 -157037156 - AluJo SINE Alu -19 293 1 1370 260 94 34 chrX 5563540 5564093 -157035837 - L1ME1 LINE L1 -5 6161 5576 1129 160 73 12 chrX 5564101 5564534 -157035396 - MLT1D LTR MaLR 0 505 1 585 228 60 88 chrX 5564541 5564826 -157035104 - L1ME1 LINE L1 -849 5297 5021 213 222 0 0 chrX 5565797 5565842 -157034088 + L2 LINE L2 3264 3308 -5 536 191 19 0 chrX 5566599 5566704 -157033226 - MSTA LTR MaLR 0 428 322 4512 190 34 2 chrX 5566704 5567551 -157032379 - MSTB-int LTR MaLR -777 874 1 1986 188 46 17 chrX 5567551 5567965 -157031965 - MSTB LTR MaLR 0 426 1 1207 190 46 8 chrX 5568380 5568643 -157031287 + MER89 LTR ERV1 287 559 0 709 215 26 52 chrX 5569968 5570080 -157029850 - MER5A DNA MER1_type 0 189 83 2473 124 20 59 chrX 5570080 5570294 -157029636 + MSTC LTR MaLR 4 194 -234 2070 124 3 25 chrX 5570294 5570609 -157029321 + AluSg SINE Alu 1 308 -2 2473 124 20 59 chrX 5570609 5570836 -157029094 + MSTC LTR MaLR 194 428 0 709 215 26 52 chrX 5570836 5570914 -157029016 - MER5A DNA MER1_type -106 83 4 1666 158 50 4 chrX 5571711 5571990 -157027940 + AluJb SINE Alu 1 292 -20 656 269 92 9 chrX 5572284 5572511 -157027419 - MER46C DNA MER2_type 0 338 93 207 154 185 62 chrX 5574359 5574424 -157025506 + L3b LINE CR1 1293 1365 -218 481 248 10 4 chrX 5574668 5574799 -157025131 - MLT1A2 LTR MaLR 0 374 260 232 211 0 18 chrX 5574820 5574877 -157025053 - MLT1C LTR MaLR -409 58 3 224 155 0 35 chrX 5576205 5576263 -157023667 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 415 240 87 37 chrX 5578631 5578829 -157021101 - MER106B DNA MER1_type 0 1059 30 207 0 0 0 chrX 5580308 5580331 -157019599 + (T)n Simple_repeat Simple_repeat 1 23 0 1645 163 7 17 chrX 5581072 5581366 -157018564 - AluJb SINE Alu -21 291 1 664 191 13 126 chrX 5582253 5582483 -157017447 + Charlie1 DNA MER1_type 2157 2360 -401 442 143 0 0 chrX 5582494 5582564 -157017366 - AluSg/x SINE Alu -67 243 174 2040 144 15 21 chrX 5583776 5584115 -157015815 - MER1B DNA MER1_type 0 337 1 201 241 0 0 chrX 5584282 5584336 -157015594 + (CA)n Simple_repeat Simple_repeat 1 54 0 2659 92 5 19 chrX 5585162 5585531 -157014399 + THE1B LTR MaLR 1 364 0 2672 229 75 55 chrX 5587604 5588687 -157011243 + L1M4 LINE L1 2626 3729 -2417 579 284 21 0 chrX 5588702 5588896 -157011034 + Charlie7 DNA MER1_type 1932 2129 -483 1090 115 19 0 chrX 5588928 5589084 -157010846 + AluSg/x SINE Alu 142 300 -12 531 239 139 23 chrX 5589116 5589307 -157010623 + Charlie7 DNA MER1_type 2219 2386 -226 1545 198 27 3 chrX 5589307 5589600 -157010330 - AluJo SINE Alu -12 300 1 531 239 139 23 chrX 5589600 5589760 -157010170 + Charlie7 DNA MER1_type 2386 2611 -1 195 258 65 0 chrX 5589876 5589938 -157009992 + MIR SINE MIR 108 173 -89 829 270 88 18 chrX 5591018 5591373 -157008557 + MLT1C LTR MaLR 6 467 0 1982 134 40 0 chrX 5591765 5592064 -157007866 + AluSx SINE Alu 1 311 -1 183 194 0 0 chrX 5592768 5592804 -157007126 + L2 LINE L2 3265 3300 -13 846 209 25 0 chrX 5592839 5593035 -157006895 + L1MA8 LINE L1 6091 6291 0 2223 183 85 14 chrX 5593911 5594418 -157005512 + MER67A LTR ERV1 1 543 0 1441 204 90 26 chrX 5595238 5595659 -157004271 + MLT1C LTR MaLR 20 467 0 525 178 112 9 chrX 5596391 5596498 -157003432 - AluSq/x SINE Alu -176 136 19 428 342 55 0 chrX 5597760 5597962 -157001968 + MER58B DNA MER1_type 87 299 -42 26 0 0 0 chrX 5598551 5598577 -157001353 + AT_rich Low_complexity Low_complexity 1 26 0 1855 144 0 46 chrX 5599859 5600164 -156999766 - AluJb SINE Alu -13 299 9 2423 89 3 0 chrX 5600614 5600918 -156999012 + AluSx SINE Alu 1 305 -7 854 128 8 0 chrX 5602180 5602305 -156997625 - FLAM_C SINE Alu -17 126 1 744 199 11 40 chrX 5602307 5602483 -156997447 + AluJo/FRAM SINE Alu 142 312 0 1992 265 73 33 chrX 5603117 5603308 -156996622 + MER21B LTR ERV1 1 183 -680 2311 82 0 0 chrX 5603308 5603613 -156996317 + AluSg SINE Alu 3 307 0 1992 265 73 33 chrX 5603613 5604122 -156995808 + MER21B LTR ERV1 183 730 -133 218 54 0 27 chrX 5604212 5604249 -156995681 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 242 253 53 0 chrX 5605115 5605190 -156994740 + MER20 DNA MER1_type 124 202 -17 2157 123 0 35 chrX 5606513 5606831 -156993099 + AluSx SINE Alu 1 307 -5 216 195 0 0 chrX 5610165 5610206 -156989724 + (TG)n Simple_repeat Simple_repeat 2 42 0 273 282 55 0 chrX 5610573 5610683 -156989247 + MER103 DNA DNA 3 118 -48 201 343 23 9 chrX 5610804 5610943 -156988987 + MIR SINE MIR 46 191 -17 4240 73 18 0 chrX 5610976 5611520 -156988410 - MER41A LTR ERV1 0 554 1 216 0 0 0 chrX 5611807 5611831 -156988099 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2984 199 101 55 chrX 5611834 5613018 -156986912 + L1ME2 LINE L1 4837 6112 -52 2116 144 71 32 chrX 5613069 5613582 -156986348 + MLT2A2 LTR ERVL 1 554 0 304 347 143 23 chrX 5613932 5614364 -156985566 - L2 LINE L2 -2601 713 230 238 236 75 47 chrX 5614386 5614492 -156985438 + MLT1J LTR MaLR 403 511 0 234 105 0 0 chrX 5614779 5614817 -156985113 + (TATG)n Simple_repeat Simple_repeat 2 39 0 225 143 41 0 chrX 5614835 5614884 -156985046 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 335 257 88 20 chrX 5615675 5615823 -156984107 - HAL1b LINE L1 -531 817 660 461 289 115 26 chrX 5615850 5615964 -156983966 - HAL1b LINE L1 -755 593 491 2159 164 40 17 chrX 5615964 5616385 -156983545 + MSTB1 LTR MaLR 1 431 -1 461 289 115 26 chrX 5616385 5616661 -156983269 - HAL1b LINE L1 -857 491 168 201 208 0 21 chrX 5619046 5619094 -156980836 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1654 150 11 14 chrX 5619115 5619395 -156980535 - AluJo SINE Alu -16 296 18 2205 147 16 16 chrX 5619538 5619925 -156980005 + MLT1B LTR MaLR 1 387 -3 609 168 0 9 chrX 5622039 5622152 -156977778 - FLAM_A SINE Alu -1 141 30 642 228 26 24 chrX 5622760 5622932 -156976998 - L1M4 LINE L1 -438 5740 5571 325 287 11 0 chrX 5623098 5623185 -156976745 + L2 LINE L2 3139 3226 -46 2479 131 22 22 chrX 5623373 5623778 -156976152 + MSTB1 LTR MaLR 28 432 0 1728 151 96 14 chrX 5625191 5625535 -156974395 + THE1C LTR MaLR 4 375 0 293 275 78 68 chrX 5625934 5626243 -156973687 + L1MEc LINE L1 1416 1727 -4669 1881 175 34 28 chrX 5626304 5626692 -156973238 + MLT1B LTR MaLR 1 390 0 754 176 35 21 chrX 5629063 5629259 -156970671 - LTR37A LTR ERV1 -21 447 227 230 258 16 0 chrX 5629926 5629988 -156969942 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 225 358 16 0 chrX 5630059 5630182 -156969748 + (TA)n Simple_repeat Simple_repeat 1 125 0 2811 94 53 5 chrX 5631295 5631709 -156968221 + L1PB2 LINE L1 5716 6149 -2 2128 117 3 16 chrX 5632204 5632511 -156967419 - AluSx SINE Alu -9 303 1 296 310 0 0 chrX 5632906 5632993 -156966937 + MER81 DNA DNA 9 95 -19 2220 133 33 33 chrX 5633534 5633896 -156966034 + THE1B LTR MaLR 3 364 0 1998 130 33 7 chrX 5634310 5634611 -156965319 + AluSx SINE Alu 1 309 -3 2281 118 0 13 chrX 5635415 5635730 -156964200 - AluSx SINE Alu -1 311 1 2069 119 0 7 chrX 5637577 5637870 -156962060 + AluSq SINE Alu 1 291 -22 608 199 21 14 chrX 5638742 5638883 -156961047 - FLAM_C SINE Alu 0 143 2 2030 187 171 79 chrX 5642478 5643360 -156956570 + L1 LINE L1 3226 4188 -1958 1358 183 39 86 chrX 5644099 5644481 -156955449 - MLT1A1 LTR MaLR -1 364 1 352 219 129 45 chrX 5645872 5646027 -156953903 + MER34 LTR ERV1 368 535 -7 2336 102 3 0 chrX 5646481 5646776 -156953154 - AluSx SINE Alu -16 296 1 2313 96 3 0 chrX 5648784 5649075 -156950855 - AluSx SINE Alu -20 292 1 475 218 192 34 chrX 5649234 5649468 -156950462 + L1MEc LINE L1 657 927 -5469 1236 235 57 24 chrX 5649491 5649916 -156950014 + L1MEc LINE L1 2231 2669 -3546 4036 190 47 25 chrX 5650037 5651674 -156948256 - L1MB3 LINE L1 -303 5880 4211 2850 188 52 45 chrX 5652094 5652807 -156947123 - LTR62 LTR ERVK -1 718 1 657 259 56 39 chrX 5652946 5653266 -156946664 - LTR16A LTR ERVL -20 430 48 1852 44 4 18 chrX 5653798 5654025 -156945905 - AluY SINE Alu -87 224 1 229 321 28 9 chrX 5654533 5654642 -156945288 + MIR SINE MIR 2 112 -150 1423 149 12 4 chrX 5656230 5656478 -156943452 - L1MB3 LINE L1 -10 6173 5924 1402 136 0 15 chrX 5656479 5656685 -156943245 + MER51A LTR ERV1 1 203 -431 1608 167 0 74 chrX 5657063 5657374 -156942556 + AluJb SINE Alu 1 288 -24 2196 106 7 10 chrX 5657752 5658053 -156941877 - AluSx SINE Alu -12 300 1 226 130 0 56 chrX 5658802 5658856 -156941074 + L1MB3 LINE L1 6129 6179 -4 1347 77 0 22 chrX 5660234 5660417 -156939513 - THE1B LTR MaLR -185 179 1 1872 136 110 8 chrX 5660888 5661242 -156938688 - MLT1B LTR MaLR 0 390 1 30 0 0 0 chrX 5661269 5661299 -156938631 + AT_rich Low_complexity Low_complexity 1 30 0 2168 125 0 0 chrX 5662499 5662794 -156937136 - AluSx SINE Alu -17 295 1 193 290 0 16 chrX 5663875 5663937 -156935993 - L2 LINE L2 -50 3263 3203 209 32 0 32 chrX 5664816 5664847 -156935083 + (CA)n Simple_repeat Simple_repeat 1 30 0 1128 111 0 0 chrX 5664985 5665129 -156934801 + AluJb SINE Alu 1 144 -168 1517 163 0 0 chrX 5665133 5665366 -156934564 + AluSg/x SINE Alu 77 309 -3 796 224 89 77 chrX 5665739 5666091 -156933839 + MLT1D LTR MaLR 1 356 -34 188 362 86 4 chrX 5667866 5668145 -156931785 - L2 LINE L2 -1266 2048 1747 288 77 0 0 chrX 5669101 5669140 -156930790 - MADE1 DNA Mariner -41 39 1 458 320 121 37 chrX 5670328 5671300 -156928630 - L1MC4 LINE L1 -210 7832 6779 1891 84 0 4 chrX 5671478 5671715 -156928215 + AluSq SINE Alu 65 300 -13 2355 83 6 16 chrX 5671719 5672031 -156927899 + AluY SINE Alu 1 309 -2 395 304 14 0 chrX 5672521 5672659 -156927271 + L1MC5 LINE L1 7287 7426 -535 2132 138 0 0 chrX 5672832 5673129 -156926801 - AluSx SINE Alu -15 297 1 451 231 63 42 chrX 5673796 5673939 -156925991 - MER3 DNA MER1_type -63 146 1 180 0 0 0 chrX 5675134 5675154 -156924776 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 14475 129 46 11 chrX 5675192 5677099 -156922831 + Tigger1 DNA MER2_type 30 2035 -383 2232 110 0 19 chrX 5677099 5677408 -156922522 - AluSx SINE Alu -9 303 1 14475 129 46 11 chrX 5677408 5677807 -156922123 + Tigger1 DNA MER2_type 2035 2418 0 945 232 36 4 chrX 5679476 5679729 -156920201 + MER33 DNA MER1_type 1 255 -69 21 0 0 0 chrX 5680781 5680802 -156919128 + AT_rich Low_complexity Low_complexity 1 21 0 298 194 48 0 chrX 5681229 5681291 -156918639 + MIR SINE MIR 60 124 -84 198 0 0 0 chrX 5681293 5681315 -156918615 + (T)n Simple_repeat Simple_repeat 1 22 0 233 289 0 0 chrX 5681672 5681755 -156918175 - MER5A DNA MER1_type -80 109 27 728 199 33 62 chrX 5681792 5682003 -156917927 - MER20 DNA MER1_type -13 206 2 846 131 81 44 chrX 5683564 5683724 -156916206 + BC200 scRNA scRNA 2 167 -33 1676 184 143 10 chrX 5684061 5684473 -156915457 - MLT1C LTR MaLR 0 467 1 2284 105 3 3 chrX 5684671 5684977 -156914953 - AluSg SINE Alu -4 306 1 290 261 23 11 chrX 5686205 5686293 -156913637 + MER5A DNA MER1_type 16 104 -85 2438 86 0 0 chrX 5686404 5686708 -156913222 - AluY SINE Alu -7 304 1 1822 154 0 7 chrX 5686765 5687075 -156912855 - AluSx SINE Alu 0 308 1 326 262 194 16 chrX 5687151 5687342 -156912588 + Charlie7 DNA MER1_type 251 475 -2137 209 231 0 15 chrX 5687669 5687734 -156912196 + CT-rich Low_complexity Low_complexity 4 67 0 389 272 1 25 chrX 5687748 5688474 -156911456 + CT-rich Low_complexity Low_complexity 1 709 0 191 407 7 15 chrX 5688968 5689103 -156910827 - MIR SINE MIR -88 174 41 239 265 37 19 chrX 5689946 5690108 -156909822 + (TA)n Simple_repeat Simple_repeat 2 166 0 893 168 96 66 chrX 5690160 5690322 -156909608 - MER6B DNA MER2_type -655 210 39 1980 147 0 10 chrX 5690322 5690621 -156909309 + AluJb SINE Alu 1 296 -16 893 168 96 66 chrX 5690621 5690655 -156909275 - MER6B DNA MER2_type -826 39 8 197 108 27 0 chrX 5690796 5690833 -156909097 + (TA)n Simple_repeat Simple_repeat 1 38 0 293 321 47 0 chrX 5692181 5692287 -156907643 - MIR SINE MIR -124 138 28 262 291 0 0 chrX 5692480 5692566 -156907364 + C-rich Low_complexity Low_complexity 2 87 0 270 212 15 15 chrX 5692924 5692990 -156906940 - MER20 DNA MER1_type -147 72 7 2141 99 0 38 chrX 5693028 5693341 -156906589 + AluSg SINE Alu 1 301 -9 863 247 14 23 chrX 5693366 5693585 -156906345 - MER20 DNA MER1_type 0 219 3 650 272 34 67 chrX 5693915 5694095 -156905835 + MER46C DNA MER2_type 2 168 -170 1890 144 3 17 chrX 5694095 5694387 -156905543 - AluSx SINE Alu -24 288 1 650 272 34 67 chrX 5694387 5694533 -156905397 + MER46C DNA MER2_type 168 317 -21 1593 177 0 62 chrX 5694993 5695315 -156904615 + AluJb SINE Alu 7 308 -4 829 221 67 14 chrX 5695391 5695599 -156904331 - MER20 DNA MER1_type 0 219 1 1533 176 42 29 chrX 5695630 5695936 -156903994 + AluJo SINE Alu 1 310 -2 935 215 68 0 chrX 5695961 5696166 -156903764 - MER20 DNA MER1_type 0 219 1 2010 157 0 7 chrX 5696266 5696571 -156903359 - AluJb SINE Alu -9 303 1 1672 225 102 88 chrX 5697239 5697472 -156902458 - MLT1E1 LTR MaLR 0 654 426 2181 110 0 0 chrX 5697472 5697779 -156902151 - AluSx SINE Alu 0 307 1 1672 225 102 88 chrX 5697779 5697965 -156901965 - MLT1E1 LTR MaLR -228 426 244 1595 168 65 20 chrX 5697965 5698257 -156901673 - AluJo SINE Alu -7 305 1 1672 225 102 88 chrX 5698257 5698480 -156901450 - MLT1E1 LTR MaLR -410 244 1 1869 184 71 121 chrX 5699243 5699878 -156900052 - L1MB7 LINE L1 -16 6168 5566 944 199 0 0 chrX 5700715 5700871 -156899059 - AluJo SINE Alu -26 286 131 40 0 0 0 chrX 5700873 5700913 -156899017 + AT_rich Low_complexity Low_complexity 1 40 0 844 149 8 8 chrX 5700913 5701047 -156898883 - AluJo SINE Alu -177 135 2 24 0 0 0 chrX 5701047 5701071 -156898859 + AT_rich Low_complexity Low_complexity 1 24 0 493 236 55 22 chrX 5702172 5702354 -156897576 - L1MB8 LINE L1 -3 6175 5988 6358 91 6 9 chrX 5703204 5704080 -156895850 - L1PA10 LINE L1 -11 6157 5285 207 0 0 0 chrX 5705443 5705466 -156894464 + (A)n Simple_repeat Simple_repeat 1 23 0 1672 186 0 28 chrX 5705466 5705784 -156894146 + AluJb SINE Alu 1 310 0 575 278 52 62 chrX 5706514 5706772 -156893158 - Charlie2 DNA MER1_type -2497 285 29 2703 102 19 16 chrX 5706772 5707146 -156892784 - THE1C LTR MaLR 0 375 1 575 278 52 62 chrX 5707146 5707175 -156892755 - Charlie2 DNA MER1_type -2753 29 1 736 208 20 0 chrX 5707336 5707485 -156892445 - MLT1D LTR MaLR -350 155 4 254 29 29 0 chrX 5707713 5707748 -156892182 + (TA)n Simple_repeat Simple_repeat 2 37 0 1741 110 75 12 chrX 5707821 5708076 -156891854 - AluSx SINE Alu -41 271 1 1396 197 97 0 chrX 5708091 5708350 -156891580 - AluJo SINE Alu -24 288 5 1483 171 17 31 chrX 5709955 5710272 -156889658 + L1MA7 LINE L1 5932 6228 -63 3821 108 45 6 chrX 5710325 5710832 -156889098 - MER1A DNA MER1_type 0 527 1 523 192 50 0 chrX 5711445 5711544 -156888386 + L1PA16 LINE L1 6063 6166 0 1439 179 58 24 chrX 5712069 5712360 -156887570 + AluJb SINE Alu 1 301 -11 1068 163 80 72 chrX 5713102 5713366 -156886564 + MLT1C LTR MaLR 5 270 -197 269 342 0 0 chrX 5713695 5713771 -156886159 - MIR SINE MIR -136 126 51 2302 110 7 0 chrX 5713987 5714288 -156885642 + AluSq SINE Alu 1 303 -10 708 272 37 5 chrX 5714882 5715099 -156884831 - MER46C DNA MER2_type -9 329 106 764 230 143 0 chrX 5715545 5715741 -156884189 - MER58A DNA MER1_type 0 224 1 3259 173 56 45 chrX 5716234 5716944 -156882986 - LTR62 LTR ERVK -1 718 1 645 259 56 39 chrX 5717083 5717403 -156882527 - LTR16A LTR ERVL -20 430 48 361 259 22 30 chrX 5717752 5717887 -156882043 - Tigger4(Zombi) DNA MER2_type -2194 537 404 289 288 51 42 chrX 5717984 5718102 -156881828 - MER46C DNA MER2_type -217 121 3 755 256 34 0 chrX 5718594 5718770 -156881160 - MER20 DNA MER1_type -33 186 5 980 208 122 20 chrX 5719623 5719868 -156880062 - MER58B DNA MER1_type 0 341 72 232 317 92 46 chrX 5719958 5720220 -156879710 - L2 LINE L2 -72 3241 2968 3471 117 17 0 chrX 5720246 5720724 -156879206 - MER1A DNA MER1_type 0 529 44 1659 167 62 0 chrX 5720767 5721043 -156878887 + AluJb SINE Alu 1 293 -19 23 0 0 0 chrX 5721046 5721069 -156878861 + AT_rich Low_complexity Low_complexity 1 23 0 222 336 18 26 chrX 5722419 5722532 -156877398 + MIR SINE MIR 29 140 -122 2195 114 0 0 chrX 5722546 5722843 -156877087 + AluSx SINE Alu 2 298 -14 666 230 141 0 chrX 5723017 5723208 -156876722 + MER20 DNA MER1_type 2 219 0 207 0 0 0 chrX 5723641 5723664 -156876266 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1842 79 0 4 chrX 5724178 5724406 -156875524 - AluSg SINE Alu -22 288 62 1298 202 65 144 chrX 5724406 5725005 -156874925 - LTR8A LTR ERV1 -142 585 34 2001 172 48 3 chrX 5725048 5725380 -156874550 - MER7A DNA MER2_type 0 346 2 1820 161 36 13 chrX 5726274 5726772 -156873158 - MER34C LTR ERV1 -2 583 35 203 301 95 70 chrX 5727011 5727423 -156872507 + L2 LINE L2 2555 2976 -338 237 299 93 28 chrX 5727555 5727592 -156872338 + L2 LINE L2 3200 3233 -80 3688 126 45 0 chrX 5727592 5728122 -156871808 - MER41C LTR ERV1 0 554 1 237 299 93 28 chrX 5728122 5728191 -156871739 + L2 LINE L2 3233 3313 0 2166 220 60 73 chrX 5728325 5729025 -156870905 - LTR8 LTR ERV1 0 691 1 21 0 0 0 chrX 5730139 5730160 -156869770 + AT_rich Low_complexity Low_complexity 1 21 0 339 25 0 0 chrX 5731213 5731253 -156868677 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 184 130 43 0 chrX 5731253 5731299 -156868631 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 664 166 27 0 chrX 5731312 5731537 -156868393 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 727 131 0 0 chrX 5732189 5732296 -156867634 + MLT2B3 LTR ERVL 3 109 -445 618 132 2 0 chrX 5732296 5732498 -156867432 + ERVL-B3 LTR ERVL 5352 5521 -243 1482 144 16 16 chrX 5732653 5732903 -156867027 + ERVL-B3 LTR ERVL 5508 5757 -7 1306 157 30 17 chrX 5732903 5733133 -156866797 + MLT2B3 LTR ERVL 1 233 -321 444 224 0 0 chrX 5733135 5733305 -156866625 + CT-rich Low_complexity Low_complexity 1 170 0 636 268 0 0 chrX 5733341 5733479 -156866451 + MLT2B3 LTR ERVL 224 361 -193 197 160 0 20 chrX 5734008 5734058 -156865872 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1787 171 0 4 chrX 5734068 5734349 -156865581 - AluJo SINE Alu -30 282 3 310 279 82 20 chrX 5734547 5734694 -156865236 - L1ME LINE L1 -647 5474 5319 705 200 0 17 chrX 5734733 5734913 -156865017 + CT-rich Low_complexity Low_complexity 2 178 0 524 217 32 5 chrX 5734962 5735188 -156864742 + CT-rich Low_complexity Low_complexity 1 232 0 1247 170 134 50 chrX 5735847 5736173 -156863757 - AluJo SINE Alu 0 351 3 1134 270 68 31 chrX 5736173 5736750 -156863180 - HAL1 LINE L1 -929 1578 981 347 211 0 0 chrX 5736778 5736849 -156863081 + MER116 DNA Mariner 9 79 -1 1396 200 74 0 chrX 5737191 5737461 -156862469 + AluJb SINE Alu 5 294 -18 451 250 0 10 chrX 5738684 5738788 -156861142 - L1MD1 LINE L1 -8 6234 6132 263 161 18 0 chrX 5738875 5738931 -156860999 + CT-rich Low_complexity Low_complexity 3 59 0 1078 222 33 27 chrX 5738952 5739412 -156860518 - MLT1D LTR MaLR -5 500 1 22 35 0 0 chrX 5739588 5739617 -156860313 + AT_rich Low_complexity Low_complexity 1 29 0 183 189 0 0 chrX 5739623 5739676 -156860254 + (TA)n Simple_repeat Simple_repeat 2 54 0 79 44 0 0 chrX 5739688 5739802 -156860128 + AT_rich Low_complexity Low_complexity 1 114 0 347 0 0 79 chrX 5739840 5739903 -156860027 + (TTTTTA)n Simple_repeat Simple_repeat 1 58 0 5805 61 4 8 chrX 5739905 5740638 -156859292 - L1PA8A LINE L1 -1 6130 5401 275 217 0 43 chrX 5740638 5740730 -156859200 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 26 0 0 0 chrX 5740730 5740756 -156859174 + AT_rich Low_complexity Low_complexity 1 26 0 436 225 40 0 chrX 5740756 5740966 -156858964 + (TA)n Simple_repeat Simple_repeat 1 218 0 23 33 0 0 chrX 5740977 5741007 -156858923 + AT_rich Low_complexity Low_complexity 1 30 0 1323 123 53 96 chrX 5741106 5741407 -156858523 - L1MA8 LINE L1 -3 6288 6001 845 255 104 9 chrX 5741437 5741760 -156858170 - MLT1E3 LTR MaLR 0 624 223 226 39 0 0 chrX 5741801 5741827 -156858103 - MLT1E3 LTR MaLR -627 27 2 2079 134 0 10 chrX 5742446 5742760 -156857170 + AluSx SINE Alu 1 311 -1 325 242 21 32 chrX 5743172 5743267 -156856663 - MER34B LTR ERV1 0 565 472 506 186 31 21 chrX 5743267 5743364 -156856566 - AluJ/FLAM SINE Alu -213 99 2 350 260 80 27 chrX 5743754 5743904 -156856026 - MER34B LTR ERV1 -403 162 5 1663 169 10 29 chrX 5744059 5744366 -156855564 + AluJb SINE Alu 1 301 -11 2923 68 5 8 chrX 5744811 5745179 -156854751 - L1PB1 LINE L1 -3 6148 5782 1021 131 11 0 chrX 5745191 5745367 -156854563 + (TA)n Simple_repeat Simple_repeat 1 178 0 225 94 0 0 chrX 5745367 5745399 -156854531 + (CA)n Simple_repeat Simple_repeat 1 32 0 1218 86 0 0 chrX 5745411 5745573 -156854357 - L1PB1 LINE L1 -360 5791 5630 400 272 75 42 chrX 5745789 5746002 -156853928 + LTR33 LTR ERVL 5 224 -297 22 0 0 0 chrX 5746574 5746596 -156853334 + AT_rich Low_complexity Low_complexity 1 22 0 1633 198 180 38 chrX 5746647 5747152 -156852778 - MER92B LTR ERV1 0 636 60 2260 160 22 33 chrX 5747152 5747603 -156852327 - MER31A LTR ERV1 0 485 40 366 183 108 11 chrX 5748162 5748255 -156851675 + ORSL DNA AcHobo 150 251 -24 742 172 140 54 chrX 5748797 5748983 -156850947 - MER31A LTR ERV1 -283 202 1 321 226 0 0 chrX 5748984 5749046 -156850884 - MER92B LTR ERV1 -573 63 2 1778 222 60 11 chrX 5749156 5749662 -156850268 + LTR69 LTR ERVL 4 581 -7 723 338 129 39 chrX 5750454 5750803 -156849127 - L3 LINE CR1 -10 1567 1251 2563 40 3 3 chrX 5750803 5751107 -156848823 - AluY SINE Alu -7 304 1 723 338 129 39 chrX 5751107 5751709 -156848221 - L3 LINE CR1 -326 1251 530 1774 182 6 56 chrX 5752139 5752515 -156847415 + MLT1A1 LTR MaLR 1 361 -4 207 0 0 0 chrX 5752788 5752811 -156847119 + (A)n Simple_repeat Simple_repeat 1 23 0 5564 133 16 19 chrX 5753015 5754064 -156845866 - L1PB4 LINE L1 0 6156 5102 239 224 77 109 chrX 5754567 5754650 -156845280 + MIR3 SINE MIR 51 128 -80 2014 191 14 3 chrX 5754650 5755011 -156844919 + MLT1A1 LTR MaLR 1 365 0 239 224 77 109 chrX 5755011 5755083 -156844847 + MIR3 SINE MIR 128 201 -7 2928 199 11 2 chrX 5755544 5756077 -156843853 - MER68 LTR ERV1 -24 538 1 3089 233 54 40 chrX 5756254 5756871 -156843059 - L1ME2 LINE L1 -1 6163 5529 1879 143 7 10 chrX 5756871 5757164 -156842766 + AluJo SINE Alu 1 292 -20 3089 233 54 40 chrX 5757164 5757536 -156842394 - L1ME2 LINE L1 -635 5529 5164 21 0 0 0 chrX 5757708 5757729 -156842201 + AT_rich Low_complexity Low_complexity 1 21 0 4678 175 23 19 chrX 5757967 5759021 -156840909 - L1MB1 LINE L1 0 6168 5113 250 309 97 27 chrX 5759068 5759327 -156840603 - L1MCa LINE L1 -5226 1200 924 1588 155 54 0 chrX 5760158 5760304 -156839626 - AluJo SINE Alu -32 280 113 216 0 0 0 chrX 5760304 5760328 -156839602 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1588 155 54 0 chrX 5760328 5760439 -156839491 - AluJo SINE Alu -199 113 9 1653 175 51 74 chrX 5760486 5760763 -156839167 + L1MB7 LINE L1 5517 5784 -400 2373 126 56 6 chrX 5760763 5761120 -156838810 - THE1C LTR MaLR 0 375 1 1653 175 51 74 chrX 5761120 5761236 -156838694 + L1MB7 LINE L1 5784 5901 -283 1144 170 95 57 chrX 5761243 5761645 -156838285 + L1MB5 LINE L1 5611 6173 -1 3216 118 4 28 chrX 5761730 5762189 -156837741 + MER83 LTR ERV1 1 448 0 1069 159 0 32 chrX 5762953 5762992 -156836938 - L1M1 LINE L1 -581 5722 5683 2196 149 10 44 chrX 5762992 5763343 -156836587 + THE1C LTR MaLR 1 339 -36 2107 106 0 0 chrX 5763343 5763617 -156836313 - AluSx SINE Alu -2 310 37 2196 149 10 44 chrX 5763617 5763653 -156836277 + THE1C LTR MaLR 339 375 0 1069 159 0 32 chrX 5763653 5763802 -156836128 - L1M1 LINE L1 -620 5683 5540 1464 190 46 21 chrX 5765750 5766034 -156833896 + AluJb SINE Alu 1 291 -21 1714 80 98 0 chrX 5766130 5766416 -156833514 - MER4-int LTR ERV1 -3548 3050 2737 1490 148 57 4 chrX 5766416 5766660 -156833270 + LTR8 LTR ERV1 1 257 -434 4714 95 62 25 chrX 5766660 5767450 -156832480 - MER4-int LTR ERV1 -4103 2495 1677 479 77 55 0 chrX 5767481 5767572 -156832358 - MER4-int LTR ERV1 -5372 1226 1131 919 131 0 29 chrX 5767572 5767709 -156832221 - AluSq/x SINE Alu -180 133 1 238 269 39 0 chrX 5767709 5767787 -156832143 - L1M3 LINE L1 -293 5875 5795 830 113 0 0 chrX 5767823 5767938 -156831992 + MLT2B1 LTR ERVL 1 115 -405 1411 181 21 31 chrX 5767942 5768230 -156831700 - L1PB4 LINE L1 -2 6154 5870 806 127 13 64 chrX 5768299 5768381 -156831549 - L1PB4 LINE L1 -284 5872 5787 360 0 0 0 chrX 5768381 5768421 -156831509 + (TG)n Simple_repeat Simple_repeat 2 41 0 806 127 13 64 chrX 5768421 5768438 -156831492 - L1PB4 LINE L1 -369 5787 5771 423 0 0 0 chrX 5768438 5768485 -156831445 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 806 127 13 64 chrX 5768485 5768541 -156831389 - L1PB4 LINE L1 -385 5771 5724 269 319 104 8 chrX 5768573 5768708 -156831222 - MIR3 SINE MIR -2 206 58 1668 189 0 10 chrX 5768806 5769097 -156830833 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 5769102 5769127 -156830803 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chrX 5769238 5769276 -156830654 + AT_rich Low_complexity Low_complexity 1 38 0 1946 107 41 17 chrX 5770141 5770431 -156829499 - AluSg SINE Alu -13 297 1 180 0 0 0 chrX 5770725 5770745 -156829185 + (CA)n Simple_repeat Simple_repeat 1 20 0 384 22 0 0 chrX 5770749 5770794 -156829136 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chrX 5770793 5770813 -156829117 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 300 313 78 11 chrX 5770887 5771066 -156828864 + L2 LINE L2 2397 2587 -727 1864 237 86 34 chrX 5771925 5772483 -156827447 - MLT1E LTR MaLR -6 587 1 39 68 0 0 chrX 5772529 5772603 -156827327 + AT_rich Low_complexity Low_complexity 1 74 0 1270 137 0 41 chrX 5772672 5772891 -156827039 + AluJb SINE Alu 101 310 -2 272 282 136 9 chrX 5772907 5773017 -156826913 - MIR SINE MIR -74 188 65 1858 166 0 0 chrX 5773344 5773622 -156826308 - AluJo SINE Alu -34 278 1 1970 136 0 17 chrX 5774041 5774343 -156825587 + AluSx SINE Alu 1 297 -15 1082 153 13 98 chrX 5774835 5775071 -156824859 + MER20 DNA MER1_type 3 218 -1 228 211 42 42 chrX 5775151 5775222 -156824708 + MIR SINE MIR 186 256 -6 513 118 11 65 chrX 5776522 5776578 -156823352 - Alu SINE Alu -13 297 246 2420 38 0 17 chrX 5776578 5776865 -156823065 - AluY SINE Alu -29 282 1 513 118 11 65 chrX 5776865 5776901 -156823029 - Alu SINE Alu -64 246 210 240 35 0 0 chrX 5777297 5777326 -156822604 + (TG)n Simple_repeat Simple_repeat 2 30 0 989 169 6 17 chrX 5777955 5778132 -156821798 + MER20 DNA MER1_type 45 219 0 1046 126 69 6 chrX 5778957 5779131 -156820799 - L1MB3 LINE L1 -2 6181 5997 21 0 0 0 chrX 5779144 5779165 -156820765 + AT_rich Low_complexity Low_complexity 1 21 0 397 238 54 61 chrX 5779934 5780081 -156819849 + MIR3 SINE MIR 37 182 -26 1562 192 4 4 chrX 5780206 5780487 -156819443 - AluJo SINE Alu -31 281 1 271 318 34 0 chrX 5780488 5780576 -156819354 + MIR3 SINE MIR 108 198 -10 237 65 0 0 chrX 5780664 5780695 -156819235 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 245 291 186 33 chrX 5780953 5781163 -156818767 - L2 LINE L2 -963 2351 2110 222 260 153 33 chrX 5781488 5781638 -156818292 - L2 LINE L2 -1202 2112 1945 424 146 73 0 chrX 5781838 5781920 -156818010 + L1PB4 LINE L1 6062 6149 -7 1466 189 0 23 chrX 5781960 5782224 -156817706 + AluJo SINE Alu 28 285 -27 24 0 0 0 chrX 5782224 5782248 -156817682 + AT_rich Low_complexity Low_complexity 1 24 0 220 310 0 17 chrX 5782268 5782326 -156817604 - MIR3 SINE MIR -53 155 99 1715 184 7 0 chrX 5783130 5783412 -156816518 + AluJo SINE Alu 1 284 -28 2357 147 11 3 chrX 5784069 5784430 -156815500 - MLT1A1 LTR MaLR 0 365 2 2170 113 3 10 chrX 5784831 5785141 -156814789 - AluSg SINE Alu -2 308 1 462 99 0 8 chrX 5787229 5787443 -156812487 + AluSx SINE Alu 1 286 -26 335 60 20 0 chrX 5788061 5788111 -156811819 + (TG)n Simple_repeat Simple_repeat 2 52 0 727 170 8 40 chrX 5788179 5788688 -156811242 + (TAGA)n Simple_repeat Simple_repeat 1 492 0 2560 45 0 0 chrX 5790146 5790434 -156809496 - AluY SINE Alu -23 288 1 1967 119 0 18 chrX 5790663 5790969 -156808961 - AluSx SINE Alu 0 301 1 468 216 31 68 chrX 5792425 5792587 -156807343 - MLT1J2 LTR MaLR -43 406 248 1882 149 10 129 chrX 5793225 5793332 -156806598 + MER7A DNA MER2_type 1 119 -2919 2347 98 0 0 chrX 5793332 5793628 -156806302 - AluSx SINE Alu -16 296 1 1882 149 10 129 chrX 5793628 5793915 -156806015 + MER7A DNA MER2_type 119 346 0 341 215 11 0 chrX 5794008 5794101 -156805829 + (TG)n Simple_repeat Simple_repeat 1 94 0 202 298 197 10 chrX 5995619 5995817 -156604113 - L2 LINE L2 -589 2725 2491 205 208 28 0 chrX 5997471 5997543 -156602387 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 357 282 66 54 chrX 5997722 5997981 -156601949 + L1MA9 LINE L1 6013 6274 -38 225 134 0 90 chrX 5998032 5998062 -156601868 + (TAAAAA)n Simple_repeat Simple_repeat 4 26 -38 1220 60 0 0 chrX 5998062 5998213 -156601717 + L1PA3 LINE L1 6002 6152 -3 225 134 0 90 chrX 5998213 5998249 -156601681 + (TAAAAA)n Simple_repeat Simple_repeat 26 64 0 279 0 0 0 chrX 5998667 5998698 -156601232 + (A)n Simple_repeat Simple_repeat 1 31 0 763 229 39 0 chrX 5998703 5998856 -156601074 + FRAM SINE Alu 1 159 -7 2333 109 0 0 chrX 6000256 6000567 -156599363 - AluSx SINE Alu -1 311 1 1711 154 11 0 chrX 6000698 6000970 -156598960 - AluJo SINE Alu -3 309 35 26 0 0 0 chrX 6001029 6001055 -156598875 + AT_rich Low_complexity Low_complexity 1 26 0 286 256 13 0 chrX 6001253 6001331 -156598599 - MLT1F LTR MaLR -463 79 1 200 219 12 37 chrX 6001892 6001974 -156597956 + A-rich Low_complexity Low_complexity 5 84 0 581 259 151 22 chrX 6002428 6002660 -156597270 - MIR SINE MIR 0 262 1 5481 90 15 0 chrX 6002971 6003762 -156596168 - L1PA10 LINE L1 -4 6164 5362 754 132 0 0 chrX 6003758 6003887 -156596043 + L1PA10 LINE L1 5222 5350 -796 * 207 100 0 0 chrX 6003962 6003992 -156595938 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chrX 6005147 6005175 -156594755 + AT_rich Low_complexity Low_complexity 1 28 0 288 343 0 0 chrX 6006132 6006231 -156593699 - MIR SINE MIR -10 252 154 1391 192 14 52 chrX 6006431 6006718 -156593212 - AluJb SINE Alu -36 276 1 251 299 0 73 chrX 6006729 6006866 -156593064 - MIR SINE MIR -64 144 18 857 136 0 0 chrX 6007157 6007289 -156592641 - FLAM_C SINE Alu 0 133 2 680 219 11 48 chrX 6007678 6007865 -156592065 - MER20 DNA MER1_type 0 219 40 2177 136 72 13 chrX 6007873 6008264 -156591666 - MSTB LTR MaLR -12 414 1 244 211 19 0 chrX 6008264 6008310 -156591620 - MER20 DNA MER1_type -172 47 1 308 323 111 72 chrX 6008347 6009084 -156590846 + L2 LINE L2 2211 2976 -338 22 0 0 0 chrX 6009357 6009379 -156590551 + AT_rich Low_complexity Low_complexity 1 22 0 217 310 147 0 chrX 6009642 6009758 -156590172 - MIR SINE MIR -21 241 109 671 284 31 7 chrX 6009774 6010182 -156589748 - MLT1E3 LTR MaLR -147 477 30 247 221 116 0 chrX 6010959 6011045 -156588885 - MER20 DNA MER1_type -100 119 24 2136 87 13 52 chrX 6011977 6012287 -156587643 + AluSx SINE Alu 1 298 -14 343 289 114 30 chrX 6013142 6013343 -156586587 + L1MC4a LINE L1 5703 5920 -1888 2171 213 30 70 chrX 6013575 6014270 -156585660 + LTR8 LTR ERV1 25 691 0 398 250 25 0 chrX 6015911 6015991 -156583939 + MER5A DNA MER1_type 2 83 -106 371 351 0 7 chrX 6016434 6016582 -156583348 - MIR SINE MIR -48 214 68 2132 138 0 0 chrX 6016974 6017285 -156582645 - AluSx SINE Alu -1 311 1 700 314 90 0 chrX 6017720 6018054 -156581876 + L2 LINE L2 2575 2938 -376 290 238 0 0 chrX 6018168 6018231 -156581699 + L2 LINE L2 3210 3272 0 216 413 0 0 chrX 6018909 6019001 -156580929 + MIR3 SINE MIR 69 160 -48 1478 159 4 4 chrX 6019576 6019833 -156580097 - Tigger3(Golem) DNA MER2_type -2 3027 2771 590 197 21 9 chrX 6019830 6019958 -156579972 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 779 193 40 0 chrX 6020048 6020198 -156579732 - FRAM SINE Alu -16 160 5 225 0 0 0 chrX 6020413 6020438 -156579492 + (CA)n Simple_repeat Simple_repeat 2 26 0 581 272 6 12 chrX 6020527 6020696 -156579234 + MER20 DNA MER1_type 50 217 -2 3122 167 19 15 chrX 6020837 6021429 -156578501 - LTR26 LTR ERV1 0 603 10 2160 135 0 0 chrX 6022004 6022308 -156577622 - AluSx SINE Alu -8 304 1 3727 94 10 52 chrX 6022397 6023015 -156576915 - LTR14B LTR ERVK 0 608 17 2449 106 30 8 chrX 6023771 6024138 -156575792 + THE1C LTR MaLR 1 375 0 822 195 41 59 chrX 6024262 6024483 -156575447 + MER58A DNA MER1_type 7 223 -1 507 60 0 0 chrX 6025154 6025221 -156574709 + (TG)n Simple_repeat Simple_repeat 1 67 0 673 211 34 11 chrX 6025370 6025545 -156574385 - MER3 DNA MER1_type -12 197 19 309 85 0 0 chrX 6026578 6026625 -156573305 + L1MA5A LINE L1 6241 6287 -10 31 0 0 0 chrX 6027034 6027065 -156572865 + AT_rich Low_complexity Low_complexity 1 31 0 1246 132 0 0 chrX 6027065 6027239 -156572691 - AluSq SINE Alu -24 289 116 183 42 0 0 chrX 6027428 6027452 -156572478 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 840 137 0 0 chrX 6027452 6027569 -156572361 - AluJb SINE Alu -195 117 1 346 363 61 9 chrX 6028314 6028526 -156571404 - L1ME LINE L1 -340 5781 5559 1662 165 36 6 chrX 6030153 6030487 -156569443 + L1MB7 LINE L1 5458 5801 -383 2220 52 38 3 chrX 6030609 6030896 -156569034 + AluY SINE Alu 2 298 -13 244 275 14 0 chrX 6031270 6031339 -156568591 - LTR41 LTR ERVL -613 160 91 1510 217 14 6 chrX 6031457 6031812 -156568118 + L1MB7 LINE L1 5814 6171 -13 4515 127 28 1 chrX 6031857 6032604 -156567326 - L1PB4 LINE L1 -2 6154 5388 243 103 0 0 chrX 6032817 6032856 -156567074 + (T)n Simple_repeat Simple_repeat 1 39 0 656 41 70 23 chrX 6036059 6036230 -156563700 + (TA)n Simple_repeat Simple_repeat 2 180 0 1570 169 47 32 chrX 6036230 6036509 -156563421 - AluJo SINE Alu -26 286 4 249 313 0 38 chrX 6039034 6039114 -156560816 - L2 LINE L2 -10 3303 3227 1510 271 81 17 chrX 6039906 6040960 -156558970 + L1ME LINE L1 4437 5553 -611 456 162 60 43 chrX 6040962 6041079 -156558851 - MER66B LTR ERV1 0 486 368 181 302 32 16 chrX 6042061 6042124 -156557806 - MIR SINE MIR -188 74 11 263 270 10 50 chrX 6042142 6042242 -156557688 + MIR3 SINE MIR 3 98 -110 1440 226 28 22 chrX 6042366 6042728 -156557202 - MLT1A1 LTR MaLR -1 427 1 1649 205 7 7 chrX 6042958 6043251 -156556679 - AluJo SINE Alu -19 293 1 251 300 40 47 chrX 6043577 6043727 -156556203 - L2 LINE L2 -169 3144 2996 501 17 0 0 chrX 6044601 6044659 -156555271 + (CA)n Simple_repeat Simple_repeat 1 58 0 1744 168 3 3 chrX 6045684 6045969 -156553961 - AluJo SINE Alu -27 285 1 967 239 92 35 chrX 6046465 6046813 -156553117 + MLT1A2 LTR MaLR 1 368 -6 2302 126 36 14 chrX 6046896 6047252 -156552678 - THE1B LTR MaLR 0 364 1 1973 221 56 4 chrX 6047291 6047756 -156552174 + MLT1D LTR MaLR 16 504 -1 1109 128 0 0 chrX 6048661 6048840 -156551090 - L1PA16 LINE L1 -190 5976 5798 198 118 0 0 chrX 6049160 6049194 -156550736 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2173 109 0 13 chrX 6049266 6049568 -156550362 - AluSx SINE Alu -3 309 12 1551 160 97 4 chrX 6050397 6050666 -156549264 - AluJb SINE Alu -17 295 2 2318 57 7 10 chrX 6050677 6050975 -156548955 - AluY SINE Alu -14 297 1 218 310 39 62 chrX 6051170 6051299 -156548631 + MER5A DNA MER1_type 8 133 -56 390 271 102 45 chrX 6051603 6051885 -156548045 + MLT2C2 LTR ERVL 1 284 -113 234 0 0 0 chrX 6051903 6051929 -156548001 + (TC)n Simple_repeat Simple_repeat 1 26 0 570 175 17 34 chrX 6051959 6052316 -156547614 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 450 0 0 0 chrX 6052327 6052759 -156547171 + (TA)n Simple_repeat Simple_repeat 1 432 0 2014 125 67 25 chrX 6052398 6052709 -156547221 + THE1C LTR MaLR 1 330 -45 450 0 0 0 chrX 6052709 6052759 -156547171 + (TA)n Simple_repeat Simple_repeat 2 51 0 2014 125 67 25 chrX 6052759 6052807 -156547123 + THE1C LTR MaLR 330 375 0 396 88 0 0 chrX 6052808 6052865 -156547065 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 206 253 0 24 chrX 6052941 6053024 -156546906 + (TA)n Simple_repeat Simple_repeat 1 81 0 2112 123 7 0 chrX 6053142 6053443 -156546487 + AluSx SINE Alu 1 303 -9 1833 156 54 15 chrX 6054447 6054781 -156545149 - MER7A DNA MER2_type 0 346 2 192 191 0 0 chrX 6054781 6054817 -156545113 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 464 156 11 0 chrX 6054823 6054913 -156545017 - L1ME LINE L1 -444 5718 5628 285 261 6 70 chrX 6054914 6055071 -156544859 + L1ME2 LINE L1 5737 5883 -281 2771 7 3 3 chrX 6055573 6055883 -156544047 + AluYa5 SINE Alu 1 310 -1 965 178 4 62 chrX 6056086 6056327 -156543603 - L1MD2 LINE L1 -22 6337 6111 22 0 0 0 chrX 6056695 6056717 -156543213 + AT_rich Low_complexity Low_complexity 1 22 0 373 186 0 20 chrX 6056964 6057066 -156542864 + (CA)n Simple_repeat Simple_repeat 1 100 0 198 281 24 12 chrX 6058223 6058305 -156541625 + MIR SINE MIR 110 192 -70 634 204 98 91 chrX 6058505 6058666 -156541264 + MER39 LTR ERV1 417 582 -125 5095 36 0 2 chrX 6058666 6059276 -156540654 + L1PA4 LINE L1 5544 6152 -3 634 204 98 91 chrX 6059276 6059378 -156540552 + MER39 LTR ERV1 582 682 -25 25 65 0 0 chrX 6059467 6059513 -156540417 + AT_rich Low_complexity Low_complexity 1 46 0 264 274 12 0 chrX 6059635 6059719 -156540211 - L1ME1 LINE L1 -81 6085 6001 1877 239 29 11 chrX 6059761 6060322 -156539608 + L1ME2 LINE L1 5391 5961 -203 890 210 36 0 chrX 6060639 6060834 -156539096 + MER58A DNA MER1_type 12 213 -11 204 164 60 15 chrX 6062450 6062517 -156537413 + (TA)n Simple_repeat Simple_repeat 2 71 0 489 82 88 0 chrX 6062528 6062789 -156537141 + (TA)n Simple_repeat Simple_repeat 1 284 0 198 293 85 94 chrX 6062983 6063089 -156536841 + L2 LINE L2 3168 3272 0 2078 117 45 3 chrX 6063592 6063883 -156536047 + AluSx SINE Alu 1 303 -9 2761 124 7 29 chrX 6064000 6064444 -156535486 - Tigger2a DNA MER2_type 0 434 1 600 136 57 16 chrX 6066072 6066139 -156533791 + (TAGA)n Simple_repeat Simple_repeat 1 64 -290 230 95 24 0 chrX 6066139 6066181 -156533749 + (CATA)n Simple_repeat Simple_repeat 2 44 0 600 136 57 16 chrX 6066181 6066413 -156533517 + (TAGA)n Simple_repeat Simple_repeat 64 354 0 344 282 146 9 chrX 6068272 6068382 -156531548 - MER82 DNA MER2_type -6 647 523 1886 199 22 10 chrX 6068399 6068802 -156531128 - MER82 DNA MER2_type -245 408 1 247 169 46 0 chrX 6068802 6068867 -156531063 + (TATG)n Simple_repeat Simple_repeat 3 70 0 331 359 42 50 chrX 6070194 6070551 -156529379 + L1ME LINE L1 5329 5682 -439 1851 141 3 55 chrX 6070577 6070904 -156529026 + AluJb SINE Alu 1 310 -2 3953 137 27 10 chrX 6071844 6072543 -156527387 - MER50 LTR ERV1 -23 711 1 1863 143 159 24 chrX 6073680 6074057 -156525873 - MSTA LTR MaLR 0 428 1 33 0 0 0 chrX 6074454 6074487 -156525443 + AT_rich Low_complexity Low_complexity 1 33 0 384 331 186 33 chrX 6074501 6075072 -156524858 + L1MC4a LINE L1 5267 5924 -1884 225 295 13 0 chrX 6076657 6076735 -156523195 - L1ME LINE L1 -467 5654 5576 276 330 33 60 chrX 6077533 6077644 -156522286 - MIR3 SINE MIR -1 207 101 509 42 111 0 chrX 6077644 6077716 -156522214 - MADE1 DNA Mariner 0 80 1 276 330 33 60 chrX 6077716 6077786 -156522144 - MIR3 SINE MIR -107 101 31 184 339 48 48 chrX 6078627 6078751 -156521179 - MIR SINE MIR -64 144 21 904 89 37 0 chrX 6081280 6081415 -156518515 - L1PA10 LINE L1 -1 6167 6028 225 0 0 0 chrX 6081750 6081775 -156518155 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 501 32 0 0 chrX 6081774 6081837 -156518093 + (GA)n Simple_repeat Simple_repeat 2 64 0 2463 76 0 0 chrX 6083411 6083712 -156516218 + AluSx SINE Alu 1 301 -11 727 176 5 49 chrX 6084476 6084681 -156515249 + L1MA8 LINE L1 6091 6286 -5 282 172 31 16 chrX 6084738 6084802 -156515128 + MLT1F1 LTR MaLR 67 131 -436 1231 234 82 62 chrX 6084811 6085064 -156514866 + L1MC3 LINE L1 7206 7452 -333 237 33 0 0 chrX 6085064 6085094 -156514836 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1231 234 82 62 chrX 6085094 6085571 -156514359 + L1MC3 LINE L1 7452 7766 -19 991 151 12 8 chrX 6085382 6085641 -156514289 + (TA)n Simple_repeat Simple_repeat 1 260 0 * 759 155 0 0 chrX 6086309 6086425 -156513505 + AluSx SINE Alu 1 116 -197 3757 144 159 95 chrX 6086425 6087713 -156512217 - pTR5 LTR ERV1 -3 2435 744 945 144 163 6 chrX 6087713 6087873 -156512057 + AluSx SINE Alu 106 290 -22 837 235 23 18 chrX 6087953 6088170 -156511760 - MER20 DNA MER1_type -1 218 1 1820 241 4 12 chrX 6088899 6089396 -156510534 + L1MD3 LINE L1 7501 7993 -2 232 297 127 17 chrX 6089626 6089744 -156510186 - MIR SINE MIR -78 184 54 205 338 78 35 chrX 6089985 6090127 -156509803 + MIR3 SINE MIR 2 149 -59 2270 98 0 0 chrX 6091033 6091328 -156508602 - AluSg SINE Alu -15 295 1 265 206 50 14 chrX 6091429 6091570 -156508360 + (TA)n Simple_repeat Simple_repeat 1 146 0 334 293 45 30 chrX 6091617 6091819 -156508111 - L1MB1 LINE L1 -257 5905 5701 233 326 152 0 chrX 6091832 6091924 -156508006 - MER5B DNA MER1_type -61 117 12 249 248 67 48 chrX 6091931 6092036 -156507894 + MER5B DNA MER1_type 65 171 -7 2665 83 11 0 chrX 6092607 6092958 -156506972 - THE1A LTR MaLR 0 355 1 11253 105 15 0 chrX 6092958 6094514 -156505416 - THE1A-int LTR MaLR 0 1580 1 2693 73 8 6 chrX 6094514 6094868 -156505062 - THE1A LTR MaLR 0 355 1 647 191 7 40 chrX 6094872 6095024 -156504906 - L1M1 LINE L1 -7397 168 22 333 93 37 0 chrX 6095042 6095096 -156504834 - L1 LINE L1 -1379 4767 4712 1501 157 18 28 chrX 6095105 6095391 -156504539 - Tigger1 DNA MER2_type -2135 283 1 4195 179 26 11 chrX 6095483 6096009 -156503921 + L1MA4 LINE L1 4490 5006 -1296 2126 146 0 19 chrX 6096009 6096324 -156503606 + AluSx SINE Alu 1 309 -3 4195 179 26 11 chrX 6096324 6097315 -156502615 + L1MA4 LINE L1 5006 6067 -235 359 186 35 0 chrX 6097308 6097394 -156502536 + L1MB4 LINE L1 6091 6179 -1 * 1803 177 20 41 chrX 6098597 6099150 -156500780 - L1M2 LINE L1 -623 5689 5158 284 167 11 89 chrX 6099150 6099240 -156500690 + MLT2C1 LTR ERVL 260 342 -55 22 35 0 0 chrX 6099245 6099274 -156500656 + AT_rich Low_complexity Low_complexity 1 29 0 418 172 6 32 chrX 6101196 6101353 -156498577 + GA-rich Low_complexity Low_complexity 1 153 0 288 215 0 25 chrX 6101900 6102021 -156497909 + GA-rich Low_complexity Low_complexity 1 118 0 220 208 19 0 chrX 6102599 6102705 -156497225 + (TA)n Simple_repeat Simple_repeat 2 109 0 22 0 0 0 chrX 6102922 6102944 -156496986 + AT_rich Low_complexity Low_complexity 1 22 0 296 237 33 3 chrX 6102990 6103319 -156496611 + (TA)n Simple_repeat Simple_repeat 1 339 0 391 154 49 0 chrX 6103332 6103725 -156496205 + (TA)n Simple_repeat Simple_repeat 1 412 0 343 136 0 0 chrX 6106101 6106167 -156493763 - L1P4 LINE L1 -507 5659 5594 435 180 0 30 chrX 6106477 6106577 -156493353 + L1PA16 LINE L1 5733 5829 -337 1945 158 21 21 chrX 6106577 6106958 -156492972 + L1PA16 LINE L1 5784 6164 -2 288 0 0 0 chrX 6107400 6107432 -156492498 + (A)n Simple_repeat Simple_repeat 1 32 0 223 333 62 31 chrX 6107650 6107779 -156492151 - MIR SINE MIR 0 262 130 1744 94 148 0 chrX 6110195 6110451 -156489479 + AluSx SINE Alu 1 294 -18 2066 92 82 0 chrX 6110790 6111071 -156488859 - AluSg SINE Alu -6 304 1 606 165 8 8 chrX 6111464 6111585 -156488345 - MLT2B2 LTR ERVL -394 121 1 552 100 0 0 chrX 6111592 6111672 -156488258 - MADE1 DNA Mariner 0 80 1 2357 86 3 0 chrX 6111824 6112116 -156487814 + AluSp SINE Alu 1 293 -20 832 292 80 31 chrX 6112120 6112630 -156487300 - L1MEc LINE L1 -4336 2060 1526 2255 57 0 30 chrX 6113157 6113455 -156486475 - AluY SINE Alu -22 289 1 21 36 0 0 chrX 6113822 6113850 -156486080 + AT_rich Low_complexity Low_complexity 1 28 0 402 227 241 0 chrX 6115737 6115878 -156484052 - MER5A DNA MER1_type -6 183 9 1671 179 3 25 chrX 6116823 6117141 -156482789 - AluJo SINE Alu -1 311 1 1916 132 10 24 chrX 6117882 6118178 -156481752 - AluJb SINE Alu -20 292 1 1140 86 0 0 chrX 6118198 6118628 -156481302 + (TA)n Simple_repeat Simple_repeat 1 430 0 2253 107 0 7 chrX 6120925 6121349 -156478581 + AluY SINE Alu 1 422 0 310 233 25 42 chrX 6122249 6122369 -156477561 - L1MC4 LINE L1 0 8042 7925 216 0 0 0 chrX 6122384 6122408 -156477522 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1933 107 44 4 chrX 6122410 6122680 -156477250 - AluSq SINE Alu -32 281 1 846 104 19 13 chrX 6122687 6122841 -156477089 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 863 160 6 0 chrX 6122884 6123059 -156476871 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 761 191 8 0 chrX 6123076 6123342 -156476588 + (TCTG)n Simple_repeat Simple_repeat 1 268 0 1444 239 81 84 chrX 6123416 6124294 -156475636 - L1MC4 LINE L1 -120 7922 7048 403 306 95 31 chrX 6124958 6125180 -156474750 - L3 LINE CR1 -230 1347 1112 229 299 65 19 chrX 6125190 6125297 -156474633 + MER117 DNA MER1_type 33 144 -53 1802 181 13 19 chrX 6125310 6125624 -156474306 + AluJb SINE Alu 1 312 0 214 301 0 55 chrX 6125789 6125862 -156474068 - L3 LINE CR1 -621 956 888 270 0 0 0 chrX 6126875 6126905 -156473025 + (TG)n Simple_repeat Simple_repeat 1 30 0 249 33 0 0 chrX 6126905 6126935 -156472995 + (GA)n Simple_repeat Simple_repeat 1 30 0 267 286 17 76 chrX 6127631 6127667 -156472263 - MIR SINE MIR -71 191 154 2364 63 0 3 chrX 6127667 6127966 -156471964 - AluY SINE Alu -13 298 1 267 286 17 76 chrX 6127966 6128048 -156471882 - MIR SINE MIR -108 154 80 3471 139 13 95 chrX 6128357 6128855 -156471075 + MER44D DNA MER2_type 1 415 -2172 2447 83 32 29 chrX 6128855 6129229 -156470701 - THE1C LTR MaLR 0 375 1 3471 139 13 95 chrX 6129229 6129498 -156470432 + MER44D DNA MER2_type 415 705 0 633 260 119 102 chrX 6129498 6130017 -156469913 - MLT1F1 LTR MaLR -5 562 10 2239 83 20 10 chrX 6132029 6132353 -156467577 - AluSp SINE Alu 0 313 1 1194 146 30 43 chrX 6133099 6133332 -156466598 - MER30 DNA MER1_type 0 230 1 249 250 17 0 chrX 6133404 6133464 -156466466 + G-rich Low_complexity Low_complexity 3 63 0 181 136 23 23 chrX 6133466 6133510 -156466420 + GA-rich Low_complexity Low_complexity 2 45 0 727 154 19 23 chrX 6133531 6133921 -156466009 + GA-rich Low_complexity Low_complexity 1 388 0 666 335 44 25 chrX 6135390 6135796 -156464134 - LTR16C LTR ERVL -4 487 74 1908 154 7 7 chrX 6135937 6136236 -156463694 - AluSx SINE Alu -13 299 1 697 276 115 57 chrX 6136303 6136868 -156463062 + L1M4 LINE L1 2740 3337 -2809 4946 75 42 31 chrX 6136880 6137587 -156462343 + SVA Other Other 672 1386 0 228 333 31 0 chrX 6137779 6137908 -156462022 + L1M4 LINE L1 3521 3653 -2493 362 281 130 80 chrX 6138110 6138662 -156461268 + L1M4 LINE L1 3875 4454 -1692 1723 181 10 7 chrX 6140638 6140942 -156458988 - AluSx SINE Alu -3 309 5 2706 118 8 98 chrX 6141304 6141496 -156458434 - MER4B LTR ERV1 0 779 571 183 42 0 0 chrX 6141496 6141520 -156458410 + (CATAA)n Simple_repeat Simple_repeat 1 24 0 2706 118 8 98 chrX 6141520 6141995 -156457935 - MER4B LTR ERV1 -208 571 1 1787 185 3 6 chrX 6142004 6142317 -156457613 + AluJo SINE Alu 1 312 0 411 106 24 24 chrX 6142322 6142407 -156457523 + GA-rich Low_complexity Low_complexity 1 85 0 203 88 29 0 chrX 6144043 6144077 -156455853 + (GAAAA)n Simple_repeat Simple_repeat 3 37 0 808 311 65 38 chrX 6144665 6145327 -156454603 + Charlie7 DNA MER1_type 59 738 -1874 370 243 29 70 chrX 6145326 6145598 -156454332 + Charlie7 DNA MER1_type 2349 2609 -3 * 2229 90 6 51 chrX 6146247 6146559 -156453371 + AluSg SINE Alu 1 298 -12 278 291 58 0 chrX 6147214 6147317 -156452613 - Charlie2 DNA MER1_type -2305 477 369 297 321 0 15 chrX 6147420 6147551 -156452379 - Charlie2 DNA MER1_type -2483 299 171 456 309 42 30 chrX 6147712 6147880 -156452050 + MIR SINE MIR 62 231 -31 7768 71 5 9 chrX 6147897 6148973 -156450957 + MER11C LTR ERVK 1 1071 0 934 233 116 33 chrX 6149265 6149647 -156450283 + MLT1D LTR MaLR 88 498 -7 4933 104 3 19 chrX 6149896 6150127 -156449803 + L1MA2 LINE L1 5559 5792 -512 1496 89 181 16 chrX 6150127 6150375 -156449555 + AluSc SINE Alu 1 289 -10 4933 104 3 19 chrX 6150375 6150901 -156449029 + L1MA2 LINE L1 5792 6304 0 2600 149 4 28 chrX 6150907 6151411 -156448519 + L1MA3 LINE L1 5814 6305 0 23 0 0 0 chrX 6151411 6151434 -156448496 + AT_rich Low_complexity Low_complexity 1 23 0 2444 119 119 0 chrX 6151996 6152384 -156447546 - MER57B LTR ERV1 0 434 1 2193 171 72 100 chrX 6152387 6153077 -156446853 - MER50 LTR ERV1 -54 680 10 2125 171 40 33 chrX 6153369 6153819 -156446111 + MER4E LTR ERV1 1 453 -326 559 122 0 0 chrX 6153830 6153912 -156446018 - AluJ/FRAM SINE Alu -15 297 216 1941 116 0 65 chrX 6153912 6154267 -156445663 + MER4E LTR ERV1 448 779 0 21 0 0 0 chrX 6155411 6155432 -156444498 + AT_rich Low_complexity Low_complexity 1 21 0 203 318 15 15 chrX 6156125 6156191 -156443739 + MER5B DNA MER1_type 2 67 -111 304 209 68 25 chrX 6156324 6156487 -156443443 + (CATATA)n Simple_repeat Simple_repeat 3 172 0 569 298 77 25 chrX 6156667 6156752 -156443178 + MIR SINE MIR 12 91 -171 2248 87 30 0 chrX 6156752 6157050 -156442880 - AluSx SINE Alu -5 307 1 569 298 77 25 chrX 6157050 6157199 -156442731 + MIR SINE MIR 91 258 -4 394 309 77 24 chrX 6157900 6158068 -156441862 - MER5B DNA MER1_type -1 177 1 1036 160 12 72 chrX 6158608 6158858 -156441072 + L1MD2 LINE L1 6111 6345 -14 222 37 0 0 chrX 6158871 6158898 -156441032 + (GA)n Simple_repeat Simple_repeat 2 28 0 5789 114 23 23 chrX 6159540 6160610 -156439320 - L1PA13 LINE L1 0 6163 5098 306 0 0 0 chrX 6160627 6160661 -156439269 + (CA)n Simple_repeat Simple_repeat 2 35 0 194 291 175 10 chrX 6160665 6160768 -156439162 - MIR SINE MIR -42 220 101 1551 168 58 21 chrX 6160806 6161097 -156438833 - AluJo SINE Alu -10 302 1 2297 36 79 0 chrX 6161123 6161400 -156438530 + AluY SINE Alu 1 299 -12 2183 93 101 58 chrX 6161919 6162336 -156437594 + LTR49 LTR ERV1 1 435 -160 1322 139 46 8 chrX 6162339 6162577 -156437353 - L1PB4 LINE L1 -391 5765 5519 * 1440 173 13 23 chrX 6162576 6162876 -156437054 + L1PB4 LINE L1 5784 6080 -76 814 154 0 29 chrX 6163370 6163506 -156436424 - FLAM_A SINE Alu -1 132 1 1055 174 38 19 chrX 6164412 6164624 -156435306 + MER20 DNA MER1_type 1 216 -3 21 57 0 0 chrX 6165094 6165129 -156434801 + AT_rich Low_complexity Low_complexity 1 35 0 35 0 0 0 chrX 6165223 6165258 -156434672 + AT_rich Low_complexity Low_complexity 1 35 0 40 21 0 0 chrX 6165369 6165416 -156434514 + AT_rich Low_complexity Low_complexity 1 47 0 273 197 0 0 chrX 6166339 6166400 -156433530 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 291 267 20 0 chrX 6168620 6168766 -156431164 + GA-rich Low_complexity Low_complexity 3 151 0 21 0 0 0 chrX 6169412 6169433 -156430497 + AT_rich Low_complexity Low_complexity 1 21 0 810 188 0 0 chrX 6170874 6171007 -156428923 - FLAM_C SINE Alu 0 133 1 695 180 9 0 chrX 6172302 6172413 -156427517 + FLAM_A SINE Alu 1 112 -30 324 0 0 0 chrX 6172422 6172458 -156427472 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 253 38 164 chrX 6175645 6175795 -156424135 - L2 LINE L2 -69 3244 3077 2306 73 6 49 chrX 6175795 6176122 -156423808 + AluSq SINE Alu 1 313 0 219 253 38 164 chrX 6176122 6176277 -156423653 - L2 LINE L2 -236 3077 3010 593 253 79 0 chrX 6176277 6176467 -156423463 + MER3 DNA MER1_type 1 205 -4 219 253 38 164 chrX 6176467 6176606 -156423324 - L2 LINE L2 -303 3010 2855 202 243 54 63 chrX 6177049 6177160 -156422770 + MIR SINE MIR 85 194 -68 1216 214 81 27 chrX 6177162 6177532 -156422398 - MLT1D LTR MaLR 0 505 116 300 393 15 15 chrX 6177693 6177828 -156422102 + L2 LINE L2 3138 3272 0 2279 126 0 0 chrX 6178254 6178564 -156421366 + AluSq SINE Alu 1 310 -3 380 287 52 9 chrX 6178988 6179103 -156420827 + L2 LINE L2 3189 3308 -5 1830 140 0 92 chrX 6179314 6179457 -156420473 + AluJo SINE Alu 9 105 -207 2302 94 19 0 chrX 6179457 6179764 -156420166 + AluSp SINE Alu 1 313 0 1830 140 0 92 chrX 6179764 6179955 -156419975 + AluJo SINE Alu 105 312 0 445 156 21 10 chrX 6179966 6180062 -156419868 + GA-rich Low_complexity Low_complexity 2 98 0 231 114 0 0 chrX 6180062 6180106 -156419824 + (CAGG)n Simple_repeat Simple_repeat 2 45 0 269 344 46 23 chrX 6181264 6181395 -156418535 + L2 LINE L2 2227 2360 -954 453 294 0 0 chrX 6181549 6181675 -156418255 - MER94 DNA DNA -4 130 5 276 322 46 11 chrX 6182236 6182323 -156417607 + L2 LINE L2 3193 3282 -31 2247 77 11 0 chrX 6182401 6182687 -156417243 - AluSg SINE Alu -21 289 1 239 250 0 0 chrX 6183947 6183995 -156415935 + (TATG)n Simple_repeat Simple_repeat 1 48 0 292 275 0 0 chrX 6184346 6184426 -156415504 - MIR SINE MIR -22 240 161 1231 267 107 36 chrX 6184444 6185522 -156414408 + L1ME3A LINE L1 3854 5031 -1115 2480 125 14 3 chrX 6185522 6185882 -156414048 + THE1B LTR MaLR 1 364 0 1231 267 107 36 chrX 6185882 6186026 -156413904 + L1ME3A LINE L1 5031 5163 -983 1482 117 24 5 chrX 6186033 6186246 -156413684 + AluSq SINE Alu 1 217 -96 270 45 45 0 chrX 6186246 6186290 -156413640 + AluSq SINE Alu 251 296 -7 2221 116 0 0 chrX 6186363 6186655 -156413275 + AluSx SINE Alu 1 292 -20 1214 279 87 19 chrX 6186707 6187328 -156412602 + L1ME3A LINE L1 5326 5988 -182 67 102 0 0 chrX 6187374 6187609 -156412321 + AT_rich Low_complexity Low_complexity 1 235 0 297 127 91 0 chrX 6187609 6187664 -156412266 + HsTC2 DNA Tc2 1291 1350 -548 231 251 105 26 chrX 6187694 6187885 -156412045 + HsTC2 DNA Tc2 1589 1794 -104 31 26 0 0 chrX 6188300 6188338 -156411592 + AT_rich Low_complexity Low_complexity 1 38 0 2558 115 30 2 chrX 6188826 6189226 -156410704 + L1PA7 LINE L1 8 418 -6043 206 118 0 0 chrX 6189226 6189260 -156410670 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 20057 78 19 1 chrX 6189282 6192984 -156406946 + L1PA7 LINE L1 2680 6446 -23 202 231 0 39 chrX 6193679 6193731 -156406199 - L2 LINE L2 -24 3248 3199 545 254 8 0 chrX 6194812 6194930 -156405000 - FLAM_A SINE Alu -13 129 11 788 171 16 144 chrX 6195031 6195288 -156404642 - MER58A DNA MER1_type 0 224 1 2258 57 0 54 chrX 6195957 6196287 -156403643 - AluY SINE Alu 0 314 1 865 151 0 0 chrX 6196293 6196419 -156403511 - FLAM_C SINE Alu -17 126 1 186 43 0 0 chrX 6196596 6196619 -156403311 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2226 92 0 17 chrX 6196621 6196913 -156403017 - AluSx SINE Alu -25 287 1 248 314 202 39 chrX 6198475 6199148 -156400782 - L2 LINE L2 -823 2491 1709 1219 312 71 10 chrX 6200145 6200655 -156399275 - L2 LINE L2 -603 2711 2171 330 195 0 0 chrX 6200994 6201071 -156398859 + (TG)n Simple_repeat Simple_repeat 2 78 0 297 240 20 40 chrX 6201071 6201221 -156398709 + (TA)n Simple_repeat Simple_repeat 1 147 0 2176 83 0 0 chrX 6202206 6202471 -156397459 + AluSx SINE Alu 23 287 -25 239 0 0 31 chrX 6202475 6202507 -156397423 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 1930 134 44 0 chrX 6203224 6203522 -156396408 + AluJo SINE Alu 1 311 -1 2496 64 0 0 chrX 6204033 6204331 -156395599 + AluY SINE Alu 1 298 -13 1868 161 3 3 chrX 6205506 6205811 -156394119 + AluJb SINE Alu 5 309 -3 4156 83 29 9 chrX 6206799 6207356 -156392574 - L1PA11 LINE L1 -1 6173 5606 1618 269 137 61 chrX 6207644 6207729 -156392201 + L2 LINE L2 1959 2036 -1277 2128 124 3 13 chrX 6207729 6208035 -156391895 - AluSx SINE Alu -9 303 1 1618 269 137 61 chrX 6208035 6208931 -156390999 + L2 LINE L2 2036 3014 -299 2239 148 62 31 chrX 6209044 6209561 -156390369 + MLT2A2 LTR ERVL 1 554 0 600 224 7 41 chrX 6209582 6209729 -156390201 + L2 LINE L2 3172 3313 0 1671 201 0 22 chrX 6210494 6210812 -156389118 + AluJo SINE Alu 1 311 -1 438 20 0 0 chrX 6211124 6211140 -156388790 + (CA)n Simple_repeat Simple_repeat 1 67 0 438 20 0 0 chrX 6211140 6211191 -156388739 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 345 76 17 chrX 6211272 6211391 -156388539 - MIR3 SINE MIR -23 185 60 1364 202 0 0 chrX 6211565 6211788 -156388142 - MER58A DNA MER1_type 0 224 2 204 163 0 47 chrX 6211902 6211945 -156387985 - MIR SINE MIR -109 153 113 21 0 0 0 chrX 6214168 6214189 -156385741 + AT_rich Low_complexity Low_complexity 1 21 0 2854 105 21 9 chrX 6264528 6264955 -156334975 + MER1A DNA MER1_type 98 529 0 1798 181 10 7 chrX 6266330 6266640 -156333290 - AluJo SINE Alu -1 311 1 207 0 0 0 chrX 6268523 6268546 -156331384 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 231 128 0 43 chrX 6268810 6268857 -156331073 + L1MB2 LINE L1 6127 6171 0 2563 55 0 13 chrX 6269579 6269888 -156330042 + AluY SINE Alu 1 305 -6 2095 103 7 7 chrX 6271400 6271708 -156328222 - AluSc SINE Alu 0 308 1 222 222 0 0 chrX 6272564 6272618 -156327312 + (CACCAT)n Simple_repeat Simple_repeat 3 56 0 288 281 32 11 chrX 6272725 6272841 -156327089 - MIR SINE MIR -65 143 40 425 333 36 0 chrX 6272886 6273054 -156326876 + MER5B DNA MER1_type 1 174 -4 1692 93 68 0 chrX 6274107 6274343 -156325587 + AluSx SINE Alu 59 310 -2 277 343 57 12 chrX 6274377 6274622 -156325308 + HAL1b LINE L1 233 488 -860 532 292 72 38 chrX 6274888 6275234 -156324696 + HAL1b LINE L1 633 990 -358 237 270 45 11 chrX 6275296 6275385 -156324545 - MER68 LTR ERV1 -470 92 1 1857 155 7 17 chrX 6275505 6275801 -156324129 + AluSx SINE Alu 1 293 -19 2446 117 8 11 chrX 6277295 6277671 -156322259 + THE1C LTR MaLR 1 375 0 456 145 77 0 chrX 6277739 6277824 -156322106 + MER20 DNA MER1_type 21 112 -107 1590 129 132 4 chrX 6277824 6278173 -156321757 + LTR51 LTR ERV1 1 432 -239 * 2709 117 13 41 chrX 6278170 6278397 -156321533 + HSMAR2 DNA Mariner 854 1063 -239 2676 55 0 0 chrX 6278397 6278706 -156321224 + AluY SINE Alu 1 309 -2 2709 117 13 41 chrX 6278706 6278940 -156320990 + HSMAR2 DNA Mariner 1063 1302 0 2099 304 72 29 chrX 6278942 6279927 -156320003 + L1MEc LINE L1 117 1059 -5337 207 0 0 0 chrX 6279927 6279950 -156319980 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2099 304 72 29 chrX 6279950 6280773 -156319157 + L1MEc LINE L1 1059 2002 -4394 924 285 65 34 chrX 6280752 6281520 -156318410 + L1MEc LINE L1 2758 3549 -2666 * 1808 161 0 55 chrX 6281866 6282196 -156317734 - AluJb SINE Alu 0 312 1 1083 145 0 0 chrX 6282309 6282468 -156317462 - AluJb SINE Alu -10 302 144 478 232 9 60 chrX 6282537 6282725 -156317205 + MER5A DNA MER1_type 9 172 -6 220 332 64 72 chrX 6282784 6283239 -156316691 + L2 LINE L2 1544 1994 -1320 47 19 0 0 chrX 6283529 6283583 -156316347 + AT_rich Low_complexity Low_complexity 1 54 0 2489 87 0 0 chrX 6283933 6284243 -156315687 + AluSg SINE Alu 1 310 0 1908 290 69 55 chrX 6284268 6285423 -156314507 + L2 LINE L2 1338 2508 -806 2327 104 0 0 chrX 6286169 6286467 -156313463 + AluSx SINE Alu 1 298 -14 307 344 17 56 chrX 6286660 6286843 -156313087 + MIR SINE MIR 16 189 -68 2311 97 6 3 chrX 6287460 6287771 -156312159 + AluSx SINE Alu 1 312 0 2456 85 0 0 chrX 6287996 6288302 -156311628 + AluSc SINE Alu 1 306 -3 890 215 0 0 chrX 6288597 6288769 -156311161 - FRAM SINE Alu -4 172 1 1000 217 30 0 chrX 6288797 6289000 -156310930 - MER58A DNA MER1_type -11 213 5 1648 161 4 4 chrX 6289755 6290015 -156309915 + AluSx SINE Alu 1 260 -52 286 332 90 10 chrX 6290280 6290475 -156309455 - MIR3 SINE MIR -34 228 20 * 356 318 56 8 chrX 6290471 6290597 -156309333 + L2 LINE L2 3182 3313 0 801 148 24 0 chrX 6291574 6291743 -156308187 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 2431 96 3 0 chrX 6292675 6292987 -156306943 - AluSq SINE Alu 0 313 1 229 148 49 37 chrX 6293410 6293491 -156306439 + (TA)n Simple_repeat Simple_repeat 1 82 0 2169 129 0 3 chrX 6293497 6293807 -156306123 + AluSx SINE Alu 1 309 -3 431 328 33 0 chrX 6294314 6294497 -156305433 + MER5A DNA MER1_type 1 189 0 2459 97 0 0 chrX 6294502 6294812 -156305118 + AluY SINE Alu 1 310 -1 24 32 0 0 chrX 6295052 6295083 -156304847 + AT_rich Low_complexity Low_complexity 1 31 0 2594 55 0 6 chrX 6295249 6295560 -156304370 + AluY SINE Alu 1 309 -2 24 0 0 0 chrX 6295895 6295919 -156304011 + AT_rich Low_complexity Low_complexity 1 24 0 3200 161 13 28 chrX 6296551 6297200 -156302730 + MER41B LTR ERV1 1 467 -11 1711 192 31 7 chrX 6297638 6297929 -156302001 + AluJo SINE Alu 1 298 -14 2021 131 3 32 chrX 6298819 6299157 -156300773 + AluSx SINE Alu 1 312 0 226 372 75 21 chrX 6299661 6299900 -156300030 - L2 LINE L2 -819 2495 2244 218 353 17 26 chrX 6299940 6300056 -156299874 - L2 LINE L2 0 3313 3199 181 338 90 54 chrX 6300835 6301057 -156298873 + MIR SINE MIR 20 249 -13 1809 193 41 131 chrX 6302250 6302912 -156297018 + L1MC4 LINE L1 7299 7900 -142 256 219 24 0 chrX 6302916 6302998 -156296932 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 213 219 0 0 chrX 6303032 6303073 -156296857 + A-rich Low_complexity Low_complexity 2 42 0 978 188 45 6 chrX 6303089 6303265 -156296665 + MER58A DNA MER1_type 4 186 -38 37 52 0 0 chrX 6303352 6303410 -156296520 + AT_rich Low_complexity Low_complexity 1 58 0 839 203 91 0 chrX 6306173 6306360 -156293570 + MER3 DNA MER1_type 1 204 -5 284 230 40 0 chrX 6306818 6306892 -156293038 + LTR33A LTR ERVL 444 520 -3 1888 222 26 38 chrX 6310691 6311217 -156288713 + L1MB8 LINE L1 5659 6178 0 188 253 46 58 chrX 6311438 6311525 -156288405 - MER5A DNA MER1_type -69 120 35 * 212 195 24 0 chrX 6311503 6311544 -156288386 + MER5A DNA MER1_type 145 186 -3 4823 118 63 34 chrX 6312063 6312820 -156287110 + MER4E LTR ERV1 1 779 0 5905 102 26 21 chrX 6312897 6313754 -156286176 + MER4D LTR ERV1 12 872 0 1522 118 45 115 chrX 6314301 6314615 -156285315 - AluSq SINE Alu -21 292 1 1030 70 7 42 chrX 6314617 6314759 -156285171 - AluSq/x SINE Alu -169 143 7 911 163 0 7 chrX 6314859 6315006 -156284924 - AluJb SINE Alu -23 289 144 2053 146 0 3 chrX 6315326 6315627 -156284303 + AluSx SINE Alu 6 305 -7 838 212 98 20 chrX 6315765 6315968 -156283962 - MER20 DNA MER1_type 0 219 1 2196 113 10 0 chrX 6316850 6317151 -156282779 + AluSq SINE Alu 1 304 -9 287 316 0 43 chrX 6317982 6318099 -156281831 - MIR SINE MIR -67 141 30 193 273 156 26 chrX 6318228 6318305 -156281625 + L2 LINE L2 3204 3290 -23 610 191 84 0 chrX 6318499 6318630 -156281300 + MER69 DNA AcHobo 6 147 -1079 1689 136 0 12 chrX 6319150 6319400 -156280530 + AluSq SINE Alu 44 290 -23 1581 168 9 58 chrX 6320607 6320934 -156278996 - AluJo SINE Alu -1 311 1 180 0 0 0 chrX 6321517 6321537 -156278393 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2075 136 0 0 chrX 6321540 6321827 -156278103 - AluSx SINE Alu -25 287 1 335 185 123 0 chrX 6322136 6322217 -156277713 + L2 LINE L2 2450 2540 -774 * 493 316 91 38 chrX 6322196 6322538 -156277392 + L2 LINE L2 2953 3312 -1 954 219 61 114 chrX 6323429 6323665 -156276265 + MER58B DNA MER1_type 1 213 -2207 3767 128 0 26 chrX 6323665 6324205 -156275725 - MER1A DNA MER1_type -1 526 1 954 219 61 114 chrX 6324205 6324328 -156275602 + MER58B DNA MER1_type 213 341 0 198 306 24 24 chrX 6324328 6324413 -156275517 + L2 LINE L2 3187 3271 -1 290 293 158 8 chrX 6324940 6325073 -156274857 + MIR SINE MIR 8 160 -102 748 289 94 61 chrX 6325552 6326075 -156273855 + MER77 LTR ERV1 55 594 -11 2366 87 10 0 chrX 6326139 6326438 -156273492 - AluSg SINE Alu -8 302 1 431 284 49 49 chrX 6326615 6326798 -156273132 - LTR16C LTR ERVL -229 262 80 1593 152 3 91 chrX 6327477 6327618 -156272312 + AluJo SINE Alu 1 102 -210 2266 88 10 10 chrX 6327618 6327915 -156272015 + AluSg SINE Alu 1 297 -13 1593 152 3 91 chrX 6327915 6328082 -156271848 + AluJo SINE Alu 102 282 -30 866 123 19 9 chrX 6328082 6328302 -156271628 + CT-rich Low_complexity Low_complexity 1 222 0 2099 141 13 0 chrX 6328302 6328600 -156271330 - AluSx SINE Alu -10 302 1 868 135 0 30 chrX 6329164 6329297 -156270633 + FLAM_C SINE Alu 1 129 -4 1387 158 4 4 chrX 6329640 6329868 -156270062 - MLT1B LTR MaLR -4 386 159 2265 140 17 13 chrX 6329869 6330258 -156269672 - MLT1B LTR MaLR 0 396 1 1679 194 3 50 chrX 6330859 6330895 -156269035 - MER58B DNA MER1_type -2094 326 290 746 257 41 0 chrX 6330895 6331066 -156268864 + MER45A DNA AcHobo 1 178 0 1679 194 3 50 chrX 6331066 6331198 -156268732 - MER58B DNA MER1_type -2130 290 153 1890 171 138 31 chrX 6331198 6331411 -156268519 + MLT1C LTR MaLR 1 190 -277 2152 91 35 7 chrX 6331411 6331726 -156268204 + AluSq SINE Alu 1 323 0 1890 171 138 31 chrX 6331726 6331930 -156268000 + MLT1C LTR MaLR 190 465 -2 1679 194 3 50 chrX 6331930 6332101 -156267829 - MER58B DNA MER1_type -2267 153 2 2914 79 94 0 chrX 6332469 6332861 -156267069 + L1PA10 LINE L1 5728 6156 -12 2415 60 0 10 chrX 6332862 6333164 -156266766 - AluY SINE Alu -12 299 1 186 43 0 0 chrX 6333255 6333278 -156266652 + (CA)n Simple_repeat Simple_repeat 1 23 0 752 296 60 3 chrX 6333683 6334000 -156265930 + L1MC4 LINE L1 6814 7148 -894 1547 178 32 41 chrX 6334591 6334906 -156265024 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 6335954 6335977 -156263953 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 655 233 0 0 chrX 6336006 6336126 -156263804 - FLAM_A SINE Alu -17 125 6 213 259 0 52 chrX 6336528 6336586 -156263344 + MIR SINE MIR 17 71 -191 2912 87 3 0 chrX 6336708 6337077 -156262853 - L1PB1 LINE L1 0 6151 5782 395 115 14 58 chrX 6337077 6337216 -156262714 + (TA)n Simple_repeat Simple_repeat 1 133 0 554 158 0 10 chrX 6337236 6337357 -156262573 - L1PB1 LINE L1 -361 5790 5699 1366 225 70 0 chrX 6337865 6338181 -156261749 + L1MC2 LINE L1 5949 6286 -58 477 307 135 58 chrX 6339299 6339863 -156260067 + L2 LINE L2 2200 2806 -508 263 112 17 69 chrX 6340259 6340375 -156259555 + (TA)n Simple_repeat Simple_repeat 1 110 0 1622 139 64 0 chrX 6340468 6340748 -156259182 - L1MA8 LINE L1 -7 6284 5987 351 121 0 0 chrX 6340817 6340875 -156259055 + (CA)n Simple_repeat Simple_repeat 2 59 0 1758 81 36 0 chrX 6343165 6343387 -156256543 + MER30 DNA MER1_type 1 230 0 22 0 0 0 chrX 6343575 6343597 -156256333 + AT_rich Low_complexity Low_complexity 1 22 0 3198 77 12 14 chrX 6344361 6344776 -156255154 - L1PA10 LINE L1 0 6168 5755 565 259 14 66 chrX 6345681 6345800 -156254130 + MER3 DNA MER1_type 4 109 -100 1051 180 22 59 chrX 6345800 6346022 -156253908 - MER20 DNA MER1_type -4 215 2 565 259 14 66 chrX 6346022 6346114 -156253816 + MER3 DNA MER1_type 109 204 -5 984 90 8 8 chrX 6346136 6346270 -156253660 + L1MA1 LINE L1 6167 6300 -2 21 0 0 0 chrX 6347118 6347139 -156252791 + AT_rich Low_complexity Low_complexity 1 21 0 259 289 112 20 chrX 6347210 6347362 -156252568 + MIR SINE MIR 20 185 -77 26 0 0 0 chrX 6347902 6347928 -156252002 + AT_rich Low_complexity Low_complexity 1 26 0 642 179 24 0 chrX 6347947 6348070 -156251860 + L1MB3 LINE L1 5869 5994 -189 1269 120 6 0 chrX 6348260 6348443 -156251487 + L1MB2 LINE L1 5941 6124 -47 298 164 18 27 chrX 6348449 6348537 -156251393 - MER5A DNA MER1_type -99 90 4 2203 85 7 14 chrX 6348574 6348857 -156251073 + AluSx SINE Alu 25 305 -7 453 165 0 35 chrX 6348879 6348964 -156250966 - AluJ/FRAM SINE Alu -4 308 227 1267 226 49 84 chrX 6349451 6350000 -156249930 + MER34 LTR ERV1 4 533 -9 249 33 0 0 chrX 6351026 6351056 -156248874 + (CA)n Simple_repeat Simple_repeat 1 30 0 450 281 51 34 chrX 6351109 6351287 -156248643 - MIR SINE MIR -17 245 65 701 233 0 6 chrX 6351583 6351746 -156248184 + MER5A DNA MER1_type 26 187 -2 25 31 0 0 chrX 6351969 6352001 -156247929 + AT_rich Low_complexity Low_complexity 1 32 0 996 123 11 11 chrX 6354152 6354331 -156245599 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 338 184 13 0 chrX 6354331 6354407 -156245523 + GA-rich Low_complexity Low_complexity 3 79 0 2037 120 3 7 chrX 6355342 6355634 -156244296 + AluSx SINE Alu 1 291 -21 23 0 0 0 chrX 6355634 6355657 -156244273 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chrX 6356097 6356130 -156243800 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 324 0 0 0 chrX 6356265 6356301 -156243629 + (CA)n Simple_repeat Simple_repeat 2 37 0 202 262 0 33 chrX 6357892 6357953 -156241977 + T-rich Low_complexity Low_complexity 5 63 0 1499 179 45 4 chrX 6358086 6358206 -156241724 + AluJb SINE Alu 1 115 -197 207 0 0 0 chrX 6358206 6358229 -156241701 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1499 179 45 4 chrX 6358229 6358376 -156241554 + AluJb SINE Alu 115 279 -33 445 143 0 0 chrX 6358376 6358439 -156241491 - LTR7 LTR ERV1 0 450 388 222 37 0 0 chrX 6358458 6358485 -156241445 + (GA)n Simple_repeat Simple_repeat 2 28 0 2181 80 0 0 chrX 6359747 6360009 -156239921 - AluSg SINE Alu -14 296 35 729 196 75 121 chrX 6360023 6360171 -156239759 - LTR37A LTR ERV1 -22 404 251 417 39 0 0 chrX 6360171 6360222 -156239708 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 729 196 75 121 chrX 6360222 6360420 -156239510 - LTR37A LTR ERV1 -175 251 74 1470 235 37 3 chrX 6360751 6361079 -156238851 + MER58B DNA MER1_type 2 340 -1 332 254 37 15 chrX 6361122 6361233 -156238697 + LTR48B LTR ERV1 1 108 -514 1010 217 60 63 chrX 6361260 6361658 -156238272 + MER39 LTR ERV1 113 584 -1 260 369 10 10 chrX 6361866 6361969 -156237961 + MIR3 SINE MIR 91 193 -15 1989 115 49 0 chrX 6362405 6362693 -156237237 - AluSc SINE Alu -7 302 1 201 290 72 29 chrX 6362787 6362856 -156237074 + L2 LINE L2 3192 3263 -9 2149 127 3 0 chrX 6363058 6363358 -156236572 + AluSq SINE Alu 1 301 -12 2057 126 0 0 chrX 6363701 6363987 -156235943 + AluSx SINE Alu 1 286 -26 180 0 0 0 chrX 6364371 6364391 -156235539 + (A)n Simple_repeat Simple_repeat 1 20 0 898 273 87 72 chrX 6364696 6365154 -156234776 - MLT1J LTR MaLR -45 466 2 189 256 0 0 chrX 6365201 6365244 -156234686 + L2 LINE L2 3210 3252 -20 1204 199 19 5 chrX 6365331 6365547 -156234383 - MER20 DNA MER1_type 0 219 1 241 216 20 0 chrX 6365664 6365715 -156234215 - MER65C LTR ERV1 -3 458 407 1555 113 0 5 chrX 6365715 6365937 -156233993 + AluSg/x SINE Alu 83 303 -7 496 282 77 29 chrX 6365997 6366270 -156233660 - L2 LINE L2 -529 2785 2500 497 255 62 0 chrX 6368191 6368336 -156231594 + L1MD2 LINE L1 6194 6347 -12 21 0 0 0 chrX 6368476 6368497 -156231433 + AT_rich Low_complexity Low_complexity 1 21 0 2091 141 160 19 chrX 6368838 6369213 -156230717 - MSTA LTR MaLR 0 428 1 255 398 0 0 chrX 6369254 6369372 -156230558 + MIR SINE MIR 84 201 -61 2305 101 3 3 chrX 6369398 6369705 -156230225 + AluSq SINE Alu 1 307 -6 1556 151 107 46 chrX 6370048 6370439 -156229491 - L1MB7 LINE L1 -8 6176 5762 224 338 78 7 chrX 6372089 6372243 -156227687 - MIR SINE MIR -29 233 69 2886 91 11 3 chrX 6372584 6372945 -156226985 + THE1B LTR MaLR 1 364 0 1776 117 40 7 chrX 6375131 6375404 -156224526 + L1MC1 LINE L1 6051 6332 -1 243 325 36 73 chrX 6375636 6375938 -156223992 + L2 LINE L2 3023 3313 0 23 54 0 0 chrX 6376167 6376204 -156223726 + AT_rich Low_complexity Low_complexity 1 37 0 1154 187 0 0 chrX 6376250 6376448 -156223482 - MER2 DNA MER2_type -107 238 41 2135 129 0 0 chrX 6376615 6376918 -156223012 + AluSg SINE Alu 1 303 -7 322 153 65 48 chrX 6376954 6376970 -156222960 + L1M1 LINE L1 5751 5765 -535 7685 43 4 6 chrX 6376970 6377949 -156221981 + L1PA7 LINE L1 5177 6154 0 322 153 65 48 chrX 6377949 6378025 -156221905 + L1M1 LINE L1 5765 5847 -453 691 147 0 0 chrX 6378143 6378245 -156221685 - AluJb SINE Alu -6 306 205 2460 74 0 0 chrX 6378603 6378901 -156221029 - AluY SINE Alu -13 298 1 193 314 0 0 chrX 6379966 6380017 -156219913 - MIR3 SINE MIR -49 159 109 1839 199 88 28 chrX 6380690 6381121 -156218809 - MLT1C LTR MaLR -4 463 7 527 314 64 6 chrX 6382038 6382210 -156217720 + MER5A DNA MER1_type 1 182 -7 2560 77 0 0 chrX 6382273 6382584 -156217346 - AluSx SINE Alu -1 311 1 1597 153 7 49 chrX 6383942 6384230 -156215700 - AluJo SINE Alu -16 296 21 625 205 27 0 chrX 6384445 6384557 -156215373 - FLAM_A SINE Alu -17 125 11 236 281 0 0 chrX 6385390 6385454 -156214476 + L2 LINE L2 3186 3249 -23 257 67 0 44 chrX 6385530 6385575 -156214355 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 702 182 28 45 chrX 6385616 6385792 -156214138 + MER20 DNA MER1_type 47 219 0 242 194 48 0 chrX 6386306 6386368 -156213562 + GA-rich Low_complexity Low_complexity 2 66 0 891 126 0 44 chrX 6386400 6386535 -156213395 + FLAM_C SINE Alu 1 129 -4 1253 166 9 14 chrX 6386539 6386762 -156213168 + AluJo SINE Alu 87 308 -4 812 190 6 13 chrX 6386874 6387032 -156212898 - FRAM SINE Alu -19 157 1 2003 123 0 0 chrX 6388084 6388352 -156211578 - AluSx SINE Alu -44 268 1 1371 189 9 84 chrX 6389291 6389613 -156210317 + AluJo SINE Alu 1 298 -14 304 288 93 0 chrX 6390026 6390144 -156209786 + MIR SINE MIR 80 208 -54 5093 81 59 4 chrX 6390885 6391246 -156208684 - L1PB1 LINE L1 -7 6144 5804 321 26 0 0 chrX 6391246 6391284 -156208646 + (CA)n Simple_repeat Simple_repeat 2 39 0 5093 81 59 4 chrX 6391284 6391600 -156208330 - L1PB1 LINE L1 -347 5804 5430 2353 164 12 16 chrX 6391600 6392175 -156207755 + L1PB1 LINE L1 4860 5434 -717 794 268 65 58 chrX 6392949 6393349 -156206581 - LTR16A1 LTR ERVL 0 457 55 972 137 0 0 chrX 6394182 6394438 -156205492 + (TA)n Simple_repeat Simple_repeat 1 256 0 1345 310 107 34 chrX 6395707 6396391 -156203539 + MER45C DNA AcHobo 4 737 -216 1214 208 44 14 chrX 6396486 6396779 -156203151 + MER45B DNA AcHobo 739 1040 0 337 241 12 0 chrX 6396925 6397008 -156202922 + MIR SINE MIR 153 236 -26 2250 89 23 0 chrX 6398063 6398365 -156201565 - AluSx SINE Alu -3 309 1 243 0 0 0 chrX 6398384 6398411 -156201519 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chrX 6400619 6400640 -156199290 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chrX 6401453 6401473 -156198457 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 307 284 189 0 chrX 6402337 6402432 -156197498 + MER45 DNA AcHobo 1 113 -1468 1577 146 75 14 chrX 6402436 6402716 -156197214 + MER1B DNA MER1_type 42 338 -1 2412 61 7 0 chrX 6403020 6403313 -156196617 - AluY SINE Alu -16 295 1 21 36 0 0 chrX 6403660 6403688 -156196242 + AT_rich Low_complexity Low_complexity 1 28 0 225 269 0 0 chrX 6404313 6404380 -156195550 + T-rich Low_complexity Low_complexity 1 67 0 420 301 19 19 chrX 6404387 6404543 -156195387 - MER5A DNA MER1_type -25 164 9 1821 169 0 22 chrX 6404571 6404890 -156195040 + AluJb SINE Alu 1 312 0 1749 68 119 12 chrX 6406247 6406534 -156193396 + AluSc SINE Alu 1 314 0 886 185 90 19 chrX 6408484 6408518 -156191412 + AluJo SINE Alu 87 117 -195 207 0 0 0 chrX 6408518 6408541 -156191389 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 886 185 90 19 chrX 6408541 6408717 -156191213 + AluJo SINE Alu 117 312 0 473 31 0 16 chrX 6409355 6409419 -156190511 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 25 31 0 0 chrX 6409501 6409533 -156190397 + AT_rich Low_complexity Low_complexity 1 32 0 380 270 67 105 chrX 6409570 6409725 -156190205 - L1MEc LINE L1 -4439 2126 1960 2503 68 3 3 chrX 6409725 6410033 -156189897 - AluSp SINE Alu -5 308 1 380 270 67 105 chrX 6410033 6410162 -156189768 - L1MEc LINE L1 -4605 1960 1828 428 289 50 39 chrX 6411021 6411201 -156188729 + MIR SINE MIR 17 198 -64 2014 102 3 94 chrX 6412290 6412654 -156187276 + AluSx SINE Alu 1 312 0 327 359 5 10 chrX 6412674 6412872 -156187058 + L1ME3A LINE L1 5150 5346 -800 759 182 15 30 chrX 6413068 6413200 -156186730 - FLAM_A SINE Alu -3 130 1 459 334 36 17 chrX 6413210 6413512 -156186418 + L1ME3A LINE L1 5525 5832 -338 2082 112 14 0 chrX 6413654 6413948 -156185982 + AluSx SINE Alu 1 298 -14 180 0 0 0 chrX 6414351 6414371 -156185559 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1048 154 0 17 chrX 6414675 6414850 -156185080 - L1PB1 LINE L1 -2 6149 5978 3322 104 17 0 chrX 6414853 6415313 -156184617 + L1PB1 LINE L1 5499 5966 -185 216 333 21 21 chrX 6415389 6415485 -156184445 - L2 LINE L2 -1065 2249 2154 369 167 0 0 chrX 6415883 6415961 -156183969 + GA-rich Low_complexity Low_complexity 1 78 0 1494 12 0 0 chrX 6416056 6416217 -156183713 - L1PA2 LINE L1 0 6155 5995 1905 147 24 3 chrX 6416279 6416596 -156183334 - AluSx SINE Alu 0 324 2 207 0 0 0 chrX 6416691 6416714 -156183216 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2409 61 0 29 chrX 6417036 6417347 -156182583 - AluY SINE Alu -9 302 1 418 266 55 0 chrX 6417394 6417522 -156182408 - MER5B DNA MER1_type -40 138 4 818 221 42 32 chrX 6417602 6417819 -156182111 - MER20 DNA MER1_type 0 219 1 280 169 26 0 chrX 6417917 6417994 -156181936 + (CA)n Simple_repeat Simple_repeat 2 80 0 270 303 83 18 chrX 6418489 6418598 -156181332 - L2 LINE L2 0 3313 3198 1891 267 56 14 chrX 6419150 6419720 -156180210 - HERVL40 LTR ERVL -2411 3119 2526 599 286 84 64 chrX 6419721 6420175 -156179755 - HERVL40 LTR ERVL -3918 1612 1150 682 261 22 27 chrX 6420270 6420492 -156179438 - HsTC2 DNA Tc2 -1177 721 501 448 294 68 28 chrX 6420500 6420677 -156179253 - HsTC2 DNA Tc2 -1684 214 31 1384 174 50 43 chrX 6420690 6421005 -156178925 + AluJb SINE Alu 1 317 0 735 207 0 22 chrX 6422166 6422301 -156177629 - FLAM_C SINE Alu 0 133 2 189 317 174 6 chrX 6422451 6422612 -156177318 + L2 LINE L2 2851 3038 -275 23 54 0 0 chrX 6422856 6422893 -156177037 + AT_rich Low_complexity Low_complexity 1 37 0 359 247 141 107 chrX 6422927 6423190 -156176740 + L2 LINE L2 3042 3313 0 225 364 56 48 chrX 6423400 6423631 -156176299 + L2 LINE L2 2892 3124 -189 231 278 113 15 chrX 6423912 6424045 -156175885 + LTR33A LTR ERVL 222 367 -156 234 359 13 0 chrX 6424428 6424506 -156175424 + L2 LINE L2 3193 3271 -1 673 277 75 65 chrX 6425318 6425795 -156174135 + REP3 LTR ERV 48 529 -33 3807 119 2 0 chrX 6426045 6426574 -156173356 - LTR26B LTR ERV1 0 531 2 2774 152 18 7 chrX 6427515 6427955 -156171975 + MER65A LTR ERV1 1 445 0 1167 142 40 44 chrX 6428268 6428493 -156171437 + L1MB7 LINE L1 5945 6168 -16 772 361 53 17 chrX 6428555 6429026 -156170904 - L3 LINE CR1 -41 1536 1049 784 205 66 0 chrX 6429118 6429284 -156170646 + MER53 DNA DNA 1 177 -12 3356 205 47 7 chrX 6429291 6429998 -156169932 - L1MC1 LINE L1 -10 6323 5589 213 39 0 0 chrX 6430119 6430145 -156169785 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2349 100 7 0 chrX 6431641 6431950 -156167980 - AluSq SINE Alu -2 311 1 1407 196 68 18 chrX 6432339 6432676 -156167254 + L1MA4 LINE L1 5941 6294 -6 219 325 95 16 chrX 6432695 6432821 -156167109 - MIR SINE MIR -2 260 125 936 227 19 0 chrX 6433661 6433868 -156166062 + L1MC1 LINE L1 6113 6323 -10 274 231 22 44 chrX 6433905 6433996 -156165934 + L1MC4 LINE L1 6615 6703 -1339 204 250 0 0 chrX 6433996 6434060 -156165870 + (CA)n Simple_repeat Simple_repeat 2 65 0 225 235 74 0 chrX 6434775 6434856 -156165074 + PABL_A LTR ERV1 422 508 -152 3848 117 0 8 chrX 6435170 6435685 -156164245 - MER9 LTR ERVK 0 511 1 2572 210 12 58 chrX 6436723 6437342 -156162588 - LTR9 LTR ERV1 -31 581 4 1221 140 31 0 chrX 6437345 6437538 -156162392 - HUERS-P3 LTR ERV1 -1 8918 8720 932 153 17 6 chrX 6437692 6437868 -156162062 - HUERS-P3b LTR ERV1 -2450 2565 2388 13590 159 35 51 chrX 6437876 6439674 -156160256 - HUERS-P3b LTR ERV1 -343 6653 5124 460 16 0 31 chrX 6439674 6439738 -156160192 - L1PA2 LINE L1 0 6155 6094 13590 159 35 51 chrX 6439738 6441493 -156158437 - HUERS-P3b LTR ERV1 -1872 5124 3342 6947 111 11 32 chrX 6441506 6447690 -156152240 + L1PA8 LINE L1 12 6162 -10 234 188 0 0 chrX 6447695 6447743 -156152187 + A-rich Low_complexity Low_complexity 1 48 0 438 286 83 62 chrX 6448830 6449495 -156150435 + L1M4 LINE L1 2248 2926 -3220 180 0 0 0 chrX 6449661 6449681 -156150249 + (TG)n Simple_repeat Simple_repeat 1 20 0 260 279 13 0 chrX 6449739 6449818 -156150112 + L1MC5 LINE L1 7809 7888 -73 632 332 99 42 chrX 6449939 6450364 -156149566 - L1MC4a LINE L1 -1839 5969 5521 423 0 0 0 chrX 6450769 6450816 -156149114 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2276 94 108 6 chrX 6450818 6451179 -156148751 - LTR7 LTR ERV1 -42 408 11 351 67 0 0 chrX 6451208 6451253 -156148677 + L1P5 LINE L1 5575 5619 -532 185 277 0 92 chrX 6451426 6451491 -156148439 + MIR SINE MIR 20 78 -184 342 173 376 8 chrX 6451501 6451634 -156148296 + MER5A DNA MER1_type 8 189 0 459 269 64 19 chrX 6451637 6451793 -156148137 + MIR SINE MIR 84 246 -16 1255 63 32 53 chrX 6453222 6453411 -156146519 + L1PB1 LINE L1 5607 5791 -360 2659 106 3 8 chrX 6453473 6453842 -156146088 + L1PB1 LINE L1 5782 6148 -3 30 27 0 0 chrX 6453842 6453879 -156146051 + AT_rich Low_complexity Low_complexity 1 37 0 677 140 123 9 chrX 6454334 6454448 -156145482 + AluJb SINE Alu 2 127 -185 27 0 0 0 chrX 6454453 6454480 -156145450 + AT_rich Low_complexity Low_complexity 1 27 0 34 65 0 0 chrX 6455573 6455635 -156144295 + AT_rich Low_complexity Low_complexity 1 62 0 1121 191 0 0 chrX 6455757 6456068 -156143862 + AluJo SINE Alu 95 405 0 1253 148 5 24 chrX 6456083 6456293 -156143637 + AluJo SINE Alu 1 206 -106 767 168 0 0 chrX 6456573 6456692 -156143238 - FLAM_C SINE Alu -20 123 5 1047 261 24 62 chrX 6456745 6457212 -156142718 + MLT1D LTR MaLR 3 451 -54 1770 169 33 8 chrX 6457242 6457610 -156142320 - L1MA8 LINE L1 -6 6285 5909 1537 210 14 0 chrX 6457610 6457905 -156142025 + AluJo SINE Alu 1 299 -13 2327 88 0 3 chrX 6459156 6459450 -156140480 - AluSx SINE Alu -18 294 2 213 364 116 24 chrX 6461013 6461263 -156138667 - L2 LINE L2 -649 2665 2393 753 109 78 8 chrX 6461922 6462050 -156137880 - MER85 DNA T2_type 0 139 3 665 260 11 6 chrX 6462796 6462977 -156136953 + L2 LINE L2 669 850 -2464 559 268 44 16 chrX 6463053 6463236 -156136694 - MIR SINE MIR -74 188 1 448 284 185 30 chrX 6463259 6463621 -156136309 + L2 LINE L2 872 1289 -2025 846 183 0 0 chrX 6463755 6463924 -156136006 + CT-rich Low_complexity Low_complexity 3 171 0 402 108 0 0 chrX 6463937 6464011 -156135919 + (CTG)n Simple_repeat Simple_repeat 2 75 0 1423 107 19 0 chrX 6466258 6466473 -156133457 + L1PA15 LINE L1 5941 6159 -6 318 262 148 96 chrX 6467938 6468599 -156131331 + L1M2 LINE L1 718 1250 -5599 288 252 0 39 chrX 6469355 6469458 -156130472 + C-rich Low_complexity Low_complexity 3 101 0 306 274 148 100 chrX 6469468 6470048 -156129882 + L1M2 LINE L1 718 1325 -5524 2206 111 0 3 chrX 6470476 6470783 -156129147 - AluSx SINE Alu -2 310 5 1756 137 22 4 chrX 6471378 6471693 -156128237 + AluSx SINE Alu 1 320 0 1750 189 58 11 chrX 6471959 6472339 -156127591 - MER77 LTR ERV1 -206 399 2 243 0 0 0 chrX 6472375 6472402 -156127528 + (TC)n Simple_repeat Simple_repeat 2 28 0 854 137 8 8 chrX 6473503 6473634 -156126296 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chrX 6474633 6474654 -156125276 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chrX 6474853 6474883 -156125047 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 209 347 0 14 chrX 6474885 6474957 -156124973 - L2 LINE L2 -2 3311 3241 809 192 77 24 chrX 6475398 6475606 -156124324 + MER20 DNA MER1_type 1 219 0 303 358 133 22 chrX 6475886 6476336 -156123594 - L2 LINE L2 -640 2674 2175 188 189 54 0 chrX 6476363 6476400 -156123530 - L2 LINE L2 -10 3303 3265 241 320 18 0 chrX 6476411 6476525 -156123405 - MIR SINE MIR -45 163 44 249 194 26 58 chrX 6477416 6477571 -156122359 + (TTA)n Simple_repeat Simple_repeat 2 151 0 242 273 40 30 chrX 6477644 6477743 -156122187 - Charlie2 DNA MER1_type -2762 100 1 620 311 68 0 chrX 6477890 6478125 -156121805 - MIR SINE MIR -10 252 2 438 20 0 0 chrX 6478653 6478704 -156121226 + (CA)n Simple_repeat Simple_repeat 2 52 0 2905 216 171 4 chrX 6478736 6479649 -156120281 - Tigger6a DNA MER2_type -17 1066 2 371 273 117 0 chrX 6479704 6479832 -156120098 - MIR SINE MIR -107 155 13 2182 113 0 0 chrX 6479845 6480138 -156119792 - AluSx SINE Alu -19 293 1 233 229 0 0 chrX 6480469 6480517 -156119413 - L2 LINE L2 -9 3304 3257 1491 186 34 8 chrX 6480626 6481037 -156118893 - LTR19A LTR ERV1 -8 478 1 387 138 0 25 chrX 6481260 6481340 -156118590 + MER53 DNA DNA 100 177 -12 * 462 121 0 44 chrX 6481269 6481360 -156118570 - MER53 DNA DNA -98 91 5 795 230 14 23 chrX 6481766 6481983 -156117947 - MER58A DNA MER1_type -6 218 4 227 351 47 12 chrX 6482253 6482424 -156117506 + HAL1 LINE L1 17 193 -2314 2637 227 84 52 chrX 6482490 6483576 -156116354 + Charlie2a DNA MER1_type 427 1635 -1227 1350 182 60 43 chrX 6483576 6483878 -156116052 - AluJo SINE Alu -5 307 1 2637 227 84 52 chrX 6483878 6484201 -156115729 + Charlie2a DNA MER1_type 1635 1946 -916 821 186 62 38 chrX 6484210 6484420 -156115510 + MER20 DNA MER1_type 2 216 -3 1591 237 21 42 chrX 6484464 6485114 -156114816 + Charlie2a DNA MER1_type 2226 2862 0 489 76 0 0 chrX 6485683 6485749 -156114181 + (CA)n Simple_repeat Simple_repeat 1 66 0 22 35 0 0 chrX 6485926 6485955 -156113975 + AT_rich Low_complexity Low_complexity 1 29 0 423 56 0 0 chrX 6487360 6487414 -156112516 + (CAT)n Simple_repeat Simple_repeat 3 56 0 369 0 0 0 chrX 6488076 6488117 -156111813 + (CA)n Simple_repeat Simple_repeat 1 41 0 323 78 20 0 chrX 6488130 6488181 -156111749 + (TA)n Simple_repeat Simple_repeat 1 52 0 842 129 7 0 chrX 6489721 6489861 -156110069 + (CAT)n Simple_repeat Simple_repeat 3 143 0 1991 130 0 3 chrX 6491628 6491940 -156107990 - AluSx SINE Alu 0 311 1 337 265 24 0 chrX 6491975 6492058 -156107872 - MER81 DNA DNA -4 110 26 654 294 94 43 chrX 6492070 6492539 -156107391 - L1MC5 LINE L1 -208 7753 7261 343 352 15 15 chrX 6492767 6492966 -156106964 - L1MC5 LINE L1 -791 7170 6972 668 278 53 17 chrX 6494318 6494617 -156105313 + L1ME4a LINE L1 5523 5832 -289 312 221 21 62 chrX 6494693 6494838 -156105092 + L1ME4a LINE L1 5968 6106 -15 789 291 17 60 chrX 6494869 6495004 -156104926 + L1ME3A LINE L1 5573 5712 -458 651 189 16 0 chrX 6495004 6495131 -156104799 + L1MB5 LINE L1 6035 6163 -11 789 291 17 60 chrX 6495131 6495567 -156104363 + L1ME3A LINE L1 5712 6113 -57 2262 88 0 0 chrX 6496551 6496836 -156103094 + AluSq SINE Alu 1 285 -28 213 39 0 0 chrX 6496836 6496862 -156103068 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 309 135 0 0 chrX 6497103 6497155 -156102775 + (TG)n Simple_repeat Simple_repeat 2 53 0 305 244 116 23 chrX 6498526 6498612 -156101318 - L2 LINE L2 -31 3241 3148 2461 79 3 0 chrX 6500165 6500468 -156099462 + AluSx SINE Alu 1 304 -8 432 128 0 0 chrX 6501034 6501112 -156098818 + (CA)n Simple_repeat Simple_repeat 1 78 0 901 155 37 5 chrX 6501366 6501553 -156098377 + L1MB4 LINE L1 5946 6138 -42 1275 279 83 2 chrX 6502328 6502924 -156097006 - L1ME3 LINE L1 -2 6162 5524 23 33 0 0 chrX 6502970 6503000 -156096930 + AT_rich Low_complexity Low_complexity 1 30 0 234 323 82 62 chrX 6503036 6503327 -156096603 - L2 LINE L2 0 3313 3017 193 340 75 38 chrX 6504509 6504615 -156095315 + L2 LINE L2 3162 3271 -1 211 308 206 62 chrX 6504955 6505018 -156094912 + L2 LINE L2 1600 1653 -1661 1294 222 21 21 chrX 6505018 6505306 -156094624 - AluJo SINE Alu -24 288 1 211 308 206 62 chrX 6505306 6505664 -156094266 + L2 LINE L2 1653 2082 -1232 756 243 5 36 chrX 6505843 6506065 -156093865 + MER58A DNA MER1_type 7 221 -3 511 321 126 40 chrX 6506118 6506807 -156093123 + L2 LINE L2 2262 3030 -242 26 30 0 0 chrX 6507337 6507370 -156092560 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 6507509 6507532 -156092398 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 6508249 6508272 -156091658 + AT_rich Low_complexity Low_complexity 1 23 0 753 204 47 13 chrX 6508402 6508637 -156091293 - LTR37A LTR ERV1 0 426 184 938 164 13 6 chrX 6508962 6509121 -156090809 - FRAM SINE Alu -22 154 1 220 254 17 0 chrX 6509125 6509184 -156090746 + (TA)n Simple_repeat Simple_repeat 2 61 0 2099 224 73 32 chrX 6510814 6511404 -156088526 + MLT1E2 LTR MaLR 1 614 -12 225 65 0 0 chrX 6512219 6512250 -156087680 + (TG)n Simple_repeat Simple_repeat 1 31 0 1099 86 0 0 chrX 6513233 6513372 -156086558 + AluSg/x SINE Alu 159 297 -13 248 260 115 77 chrX 6513404 6513481 -156086449 - LTR16A1 LTR ERVL 0 457 384 2267 92 7 0 chrX 6513481 6513785 -156086145 + AluSx SINE Alu 1 306 -6 248 260 115 77 chrX 6513785 6513942 -156085988 - LTR16A1 LTR ERVL -73 384 214 904 114 0 0 chrX 6514140 6514263 -156085667 + AluSp/q SINE Alu 173 295 -18 253 303 133 36 chrX 6514398 6514593 -156085337 + MIR SINE MIR 31 244 -18 333 243 7 13 chrX 6514745 6514897 -156085033 + CT-rich Low_complexity Low_complexity 2 152 0 231 342 99 12 chrX 6515135 6515296 -156084634 + MIR SINE MIR 34 208 -54 227 231 0 0 chrX 6515374 6515413 -156084517 - L2 LINE L2 -26 3246 3208 2318 81 0 0 chrX 6515434 6515719 -156084211 + AluSp SINE Alu 20 304 -9 638 220 0 68 chrX 6517400 6517577 -156082353 + MLT2C1 LTR ERVL 1 165 -232 547 238 6 55 chrX 6517488 6517669 -156082261 + MLT1D LTR MaLR 76 247 -258 * 1112 144 93 84 chrX 6517674 6518008 -156081922 + LTR24C LTR ERV1 1 337 -298 906 158 68 0 chrX 6518012 6518158 -156081772 - FRAM SINE Alu -21 155 1 822 225 47 36 chrX 6518159 6518435 -156081495 + LTR24C LTR ERV1 291 635 0 1146 206 12 8 chrX 6518436 6518683 -156081247 + MLT1D LTR MaLR 258 505 0 1545 209 146 75 chrX 6519013 6519624 -156080306 + MLT1E1 LTR MaLR 1 654 0 881 138 15 0 chrX 6520470 6520600 -156079330 + FLAM_C SINE Alu 1 132 -11 23 0 0 0 chrX 6521177 6521200 -156078730 + AT_rich Low_complexity Low_complexity 1 23 0 577 136 30 8 chrX 6521876 6522008 -156077922 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 1501 194 110 11 chrX 6522018 6522390 -156077540 - MLT2C2 LTR ERVL -55 409 1 461 287 8 0 chrX 6522527 6522649 -156077281 - L2 LINE L2 0 3313 3191 972 207 103 0 chrX 6522651 6522854 -156077076 + MER58A DNA MER1_type 1 224 0 323 351 55 25 chrX 6523433 6523635 -156076295 - MIR SINE MIR -9 253 46 300 358 106 6 chrX 6523841 6524020 -156075910 + L3 LINE CR1 923 1119 -458 229 257 0 0 chrX 6525444 6525514 -156074416 + (CAT)n Simple_repeat Simple_repeat 3 72 0 494 151 0 0 chrX 6525708 6525794 -156074136 + MIR SINE MIR 48 133 -129 317 303 68 8 chrX 6526160 6526292 -156073638 - MIR SINE MIR -63 199 60 2243 108 0 3 chrX 6527663 6527970 -156071960 - AluSq SINE Alu -7 306 1 879 214 29 29 chrX 6528506 6528712 -156071218 + MER3 DNA MER1_type 4 209 0 360 0 0 0 chrX 6530044 6530084 -156069846 + (TG)n Simple_repeat Simple_repeat 2 41 0 1287 254 60 9 chrX 6530456 6530890 -156069040 - MLT1C LTR MaLR 0 467 12 188 317 83 0 chrX 6531189 6531249 -156068681 + L2 LINE L2 3207 3271 -1 2052 217 78 25 chrX 6531738 6532292 -156067638 - MLT1E LTR MaLR 0 593 11 1061 155 133 0 chrX 6532450 6532676 -156067254 - LTR47A LTR ERVL 0 452 197 358 74 19 0 chrX 6532732 6532786 -156067144 + Alu SINE Alu 247 301 -1 319 341 119 59 chrX 6532855 6533400 -156066530 + L1ME LINE L1 39 616 -5503 344 331 54 14 chrX 6533451 6533599 -156066331 - L1 LINE L1 -1788 4358 4205 1877 170 6 12 chrX 6533599 6533940 -156065990 + MER7A DNA MER2_type 1 337 -9 464 312 88 37 chrX 6533942 6534295 -156065635 - L1 LINE L1 -1951 4195 3825 320 330 62 16 chrX 6534312 6534506 -156065424 + L1ME LINE L1 3469 3671 -2458 832 196 91 5 chrX 6534514 6534713 -156065217 + L1MB8 LINE L1 5910 6125 -53 660 292 0 0 chrX 6534743 6534897 -156065033 - FRAM SINE Alu -24 152 1 250 200 0 31 chrX 6534899 6534964 -156064966 + L1MB8 LINE L1 6114 6176 -2 253 177 42 42 chrX 6534971 6535067 -156064863 + L1ME LINE L1 3686 3781 -2348 302 287 45 13 chrX 6535151 6535308 -156064622 + L1ME LINE L1 4439 4600 -1529 217 186 23 0 chrX 6535350 6535393 -156064537 + T-rich Low_complexity Low_complexity 5 48 0 468 286 42 75 chrX 6535507 6535815 -156064115 + L1ME LINE L1 5324 5621 -532 1794 179 81 20 chrX 6536101 6536508 -156063422 - MSTB1 LTR MaLR 0 432 1 296 365 55 20 chrX 6536825 6537025 -156062905 - L2 LINE L2 -266 3047 2841 397 177 23 15 chrX 6538999 6539129 -156060801 + GA-rich Low_complexity Low_complexity 2 132 0 256 237 40 0 chrX 6539137 6539213 -156060717 - MIR SINE MIR -59 203 125 308 256 75 8 chrX 6539768 6539901 -156060029 - LTR33 LTR ERVL -356 165 24 2225 190 29 45 chrX 6540996 6541506 -156058424 + MLT1D LTR MaLR 4 505 0 623 195 24 61 chrX 6541993 6542083 -156057847 - MER5A DNA MER1_type -11 178 95 2112 152 30 25 chrX 6542083 6542444 -156057486 + THE1B LTR MaLR 2 364 0 623 195 24 61 chrX 6542444 6542517 -156057413 - MER5A DNA MER1_type -94 95 21 1559 182 54 11 chrX 6543359 6543639 -156056291 - AluJo SINE Alu -20 292 1 2092 163 5 14 chrX 6544510 6544878 -156055052 + MLT1A1 LTR MaLR 1 365 0 378 0 0 0 chrX 6545540 6545582 -156054348 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chrX 6545693 6545724 -156054206 + AT_rich Low_complexity Low_complexity 1 31 0 904 180 90 122 chrX 6545912 6546289 -156053641 + MLT1A1 LTR MaLR 1 365 0 200 114 45 23 chrX 6546329 6546373 -156053557 + T-rich Low_complexity Low_complexity 2 46 0 4517 82 5 16 chrX 6546375 6547013 -156052917 - L1PB2 LINE L1 -2 6149 5519 226 290 179 12 chrX 6548357 6548519 -156051411 - L2 LINE L2 -12 3301 3113 426 316 124 0 chrX 6548590 6548799 -156051131 - LTR16C LTR ERVL -54 437 203 41 82 0 0 chrX 6549577 6549674 -156050256 + AT_rich Low_complexity Low_complexity 1 97 0 320 245 237 7 chrX 6549852 6549991 -156049939 + MIR SINE MIR 84 254 -8 249 289 12 0 chrX 6550954 6551037 -156048893 - L1ME LINE L1 -503 5659 5576 319 336 70 50 chrX 6551051 6551328 -156048602 - L1ME LINE L1 -758 5388 5197 480 60 12 24 chrX 6551328 6551411 -156048519 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 319 336 70 50 chrX 6551411 6551672 -156048258 - L1ME LINE L1 -949 5197 4943 21 36 0 0 chrX 6551840 6551868 -156048062 + AT_rich Low_complexity Low_complexity 1 28 0 415 306 69 21 chrX 6551988 6552406 -156047524 - L1ME LINE L1 -1632 4514 4077 432 319 35 90 chrX 6552577 6553012 -156046918 + L2 LINE L2 1789 2199 -1115 298 316 49 31 chrX 6553013 6553238 -156046692 + L2 LINE L2 2530 2758 -556 245 296 69 84 chrX 6553334 6553537 -156046393 - L2 LINE L2 -243 3029 2830 257 226 107 0 chrX 6553711 6553795 -156046135 - MLT1F1 LTR MaLR 0 567 475 * 933 166 17 11 chrX 6553792 6553973 -156045957 - MLT1A1 LTR MaLR -179 186 5 1317 210 67 67 chrX 6553974 6554282 -156045648 + MER67D LTR ERV1 65 375 -139 1413 158 102 35 chrX 6554282 6554566 -156045364 - AluJo SINE Alu -9 303 1 1317 210 67 67 chrX 6554566 6554704 -156045226 + MER67D LTR ERV1 374 511 -3 342 0 0 0 chrX 6554761 6554799 -156045131 + (TG)n Simple_repeat Simple_repeat 2 39 0 342 286 10 0 chrX 6556076 6556174 -156043756 + MIR SINE MIR 34 132 -130 486 261 34 45 chrX 6556308 6556484 -156043446 + MIR SINE MIR 89 262 0 216 305 191 9 chrX 6557132 6557237 -156042693 - L2 LINE L2 -8 3264 3141 185 363 59 0 chrX 6557542 6557644 -156042286 + MIR SINE MIR 34 141 -121 207 69 0 0 chrX 6558225 6558254 -156041676 + (TG)n Simple_repeat Simple_repeat 2 30 0 1965 193 31 84 chrX 6559503 6560052 -156039878 + MLT2B1 LTR ERVL 1 520 0 226 318 37 19 chrX 6560064 6560171 -156039759 - MIR3 SINE MIR -28 180 72 2065 172 53 47 chrX 6560526 6560996 -156038934 + MLT1D LTR MaLR 31 503 -2 409 274 83 81 chrX 6561807 6561901 -156038029 + MLT1H LTR MaLR 35 127 -422 1853 166 157 18 chrX 6561901 6562341 -156037589 - MLT1D LTR MaLR 0 505 5 409 274 83 81 chrX 6562341 6562618 -156037312 + MLT1H LTR MaLR 127 407 -142 1714 162 67 63 chrX 6563822 6564040 -156035890 + MLT1C LTR MaLR 1 217 -250 2070 70 4 0 chrX 6564040 6564310 -156035620 + L1PA8A LINE L1 5860 6130 -1 1714 162 67 63 chrX 6564310 6564554 -156035376 + MLT1C LTR MaLR 217 465 -2 680 193 0 0 chrX 6564744 6564863 -156035067 - Tigger3(Golem) DNA MER2_type 0 3037 2919 255 309 0 0 chrX 6564869 6564950 -156034980 - Tigger3(Golem) DNA MER2_type -2948 81 1 728 207 67 0 chrX 6565428 6565592 -156034338 + MER58A DNA MER1_type 35 209 -15 461 286 8 16 chrX 6566754 6566880 -156033050 - L2 LINE L2 -2 3311 3187 482 190 98 15 chrX 6567334 6567479 -156032451 - MLT1G1 LTR MaLR -180 415 213 300 313 16 39 chrX 6567482 6567664 -156032266 + HAL1b LINE L1 541 718 -630 22 0 0 0 chrX 6567694 6567716 -156032214 + AT_rich Low_complexity Low_complexity 1 22 0 381 265 56 37 chrX 6567727 6568051 -156031879 + HAL1b LINE L1 832 1161 -187 781 168 6 52 chrX 6568069 6568242 -156031688 + MER47A DNA MER2_type 2 166 -200 911 196 29 6 chrX 6568257 6568430 -156031500 - FRAM SINE Alu 0 176 1 1010 143 10 54 chrX 6568444 6568647 -156031283 + MER47A DNA MER2_type 172 365 -1 257 291 60 8 chrX 6568657 6568791 -156031139 + HAL1b LINE L1 1204 1344 -4 291 205 84 0 chrX 6568826 6568909 -156031021 + MER58B DNA MER1_type 249 338 -3 367 318 117 7 chrX 6571156 6571310 -156028620 + MIR SINE MIR 8 178 -84 1597 300 94 31 chrX 6571464 6572290 -156027640 - L2 LINE L2 -1965 1349 472 458 262 81 27 chrX 6574547 6574696 -156025234 - MIR SINE MIR -78 184 28 255 31 0 0 chrX 6576430 6576462 -156023468 + (CA)n Simple_repeat Simple_repeat 2 33 0 335 296 138 33 chrX 6576508 6576660 -156023270 + L2 LINE L2 2863 3030 -283 215 296 42 28 chrX 6576659 6576730 -156023200 - L2 LINE L2 -836 2478 2407 * 473 250 29 15 chrX 6577038 6577174 -156022756 - Charlie8 DNA MER1_type -2240 177 40 207 196 22 0 chrX 6577497 6577543 -156022387 + (TG)n Simple_repeat Simple_repeat 1 47 0 1916 148 22 19 chrX 6577579 6577938 -156021992 - MLT1A1 LTR MaLR 0 365 6 186 43 0 0 chrX 6578202 6578225 -156021705 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 608 140 79 9 chrX 6578227 6578341 -156021589 - AluJo SINE Alu -30 282 161 * 717 161 9 0 chrX 6578340 6578452 -156021478 - AluJo SINE Alu -199 113 1 852 174 0 0 chrX 6579704 6579842 -156020088 + FLAM_C SINE Alu 1 138 -5 670 124 16 8 chrX 6579847 6579968 -156019962 + GA-rich Low_complexity Low_complexity 4 125 0 297 0 0 0 chrX 6580476 6580509 -156019421 + (CA)n Simple_repeat Simple_repeat 2 34 0 2334 81 0 19 chrX 6580523 6580832 -156019098 - AluSx SINE Alu -9 303 1 432 200 10 0 chrX 6581795 6581895 -156018035 - MER97c DNA MER1_type? -919 171 71 383 290 100 65 chrX 6584168 6584296 -156015634 - L1M4 LINE L1 -1308 5232 5110 1722 143 23 7 chrX 6584296 6584597 -156015333 - AluY SINE Alu -5 306 1 383 290 100 65 chrX 6584597 6584747 -156015183 - L1M4 LINE L1 -1430 5110 4944 408 297 103 20 chrX 6585310 6585681 -156014249 - L1MDa LINE L1 -3689 2851 2443 281 268 108 84 chrX 6586079 6586319 -156013611 - HAL1 LINE L1 -838 1669 1413 2839 102 21 37 chrX 6586319 6586752 -156013178 + MSTC LTR MaLR 3 428 0 281 268 108 84 chrX 6586752 6586937 -156012993 - HAL1 LINE L1 -1094 1413 1234 1110 160 19 9 chrX 6587415 6587575 -156012355 + MER20 DNA MER1_type 5 169 -50 207 0 0 0 chrX 6587575 6587598 -156012332 + (CA)n Simple_repeat Simple_repeat 1 23 0 1110 160 19 9 chrX 6587598 6587650 -156012280 + MER20 DNA MER1_type 169 219 0 2539 103 25 10 chrX 6588972 6589370 -156010560 + MLT2A1 LTR ERVL 1 404 -40 233 329 0 14 chrX 6589928 6590002 -156009928 + G-rich Low_complexity Low_complexity 1 72 0 512 273 145 54 chrX 6590156 6590316 -156009614 - MER50 LTR ERV1 -298 436 292 2102 106 0 0 chrX 6590316 6590600 -156009330 - AluY SINE Alu -7 304 21 512 273 145 54 chrX 6590600 6590831 -156009099 - MER50 LTR ERV1 -442 292 9 1414 214 105 21 chrX 6590907 6591374 -156008556 - MER84 LTR ERV1 0 507 2 301 111 28 139 chrX 6591374 6591446 -156008484 - MER84 LTR ERVI -433 74 11 * 1334 152 33 56 chrX 6591445 6591748 -156008182 - THE1C LTR MaLR -79 296 1 4859 110 12 8 chrX 6591748 6592494 -156007436 + L1PA15 LINE L1 5404 6152 -13 34 72 0 0 chrX 6592944 6593013 -156006917 + AT_rich Low_complexity Low_complexity 1 69 0 798 257 69 5 chrX 6593294 6593496 -156006434 + MIR SINE MIR 6 220 -42 2198 89 3 0 chrX 6593625 6593916 -156006014 - AluSp SINE Alu -13 300 9 2376 141 70 7 chrX 6594466 6594869 -156005061 + MSTA LTR MaLR 1 428 0 799 235 35 41 chrX 6595387 6595779 -156004151 - L1M3c LINE L1 -4729 1584 778 283 260 0 13 chrX 6595803 6595880 -156004050 - L1M3c LINE L1 -5117 1024 949 234 0 0 0 chrX 6595953 6595979 -156003951 + (TG)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chrX 6596618 6596643 -156003287 + AT_rich Low_complexity Low_complexity 1 25 0 894 66 0 0 chrX 6597268 6597374 -156002556 - AluY SINE Alu -179 132 27 775 224 54 18 chrX 6597537 6597760 -156002170 + MER46C DNA MER2_type 107 337 -1 4246 213 76 31 chrX 6598104 6599332 -156000598 + L1MA7 LINE L1 3671 4953 -1193 1330 147 49 0 chrX 6599332 6599556 -156000374 + Tigger3(Golem) DNA MER2_type 2804 3038 0 479 180 0 0 chrX 6599563 6599652 -156000278 + L1MA7 LINE L1 5388 5476 -858 3453 165 28 18 chrX 6599659 6600373 -155999557 + L1MA7 LINE L1 5571 6291 0 261 0 0 0 chrX 6600597 6600626 -155999304 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 5026 161 23 7 chrX 6600626 6602237 -155997693 - L1PA16 LINE L1 -12 6154 4531 334 332 82 71 chrX 6602383 6602859 -155997071 + L1M2 LINE L1 526 1006 -5843 286 61 41 0 chrX 6603014 6603063 -155996867 + (TA)n Simple_repeat Simple_repeat 1 51 0 189 0 0 0 chrX 6603062 6603083 -155996847 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 399 55 0 0 chrX 6603083 6603138 -155996792 + MLT2A2 LTR ERVL 399 453 0 1925 156 31 6 chrX 6603443 6603769 -155996161 - MER2 DNA MER2_type 0 345 12 507 199 6 21 chrX 6603919 6604084 -155995846 + MER58A DNA MER1_type 2 213 -11 333 298 7 0 chrX 6604642 6604783 -155995147 - L1MDa LINE L1 -3212 2917 2776 352 245 151 28 chrX 6605179 6605391 -155994539 - L1MDa LINE L1 -3978 2151 1914 28 0 0 0 chrX 6605479 6605507 -155994423 + AT_rich Low_complexity Low_complexity 1 28 0 234 297 77 19 chrX 6605756 6605911 -155994019 - L1MDa LINE L1 -4708 1421 1258 309 228 24 138 chrX 6605986 6606153 -155993777 - L1MDa LINE L1 -4918 1201 1054 246 285 63 65 chrX 6606776 6607110 -155992820 + HAL1b LINE L1 346 677 -671 343 334 126 26 chrX 6607278 6607368 -155992562 + L2 LINE L2 2124 2204 -1110 2893 143 5 20 chrX 6607368 6607809 -155992121 - Tigger2a DNA MER2_type 0 434 1 343 334 126 26 chrX 6607809 6608059 -155991871 + L2 LINE L2 2204 2498 -816 259 291 0 23 chrX 6608093 6608179 -155991751 - L2 LINE L2 -1529 1785 1702 1032 198 20 0 chrX 6608210 6608407 -155991523 - AluJo SINE Alu -2 310 110 258 32 0 0 chrX 6609376 6609407 -155990523 + (TTG)n Simple_repeat Simple_repeat 2 32 0 523 168 75 65 chrX 6609411 6609518 -155990412 - AluJo SINE Alu -188 124 17 180 111 0 0 chrX 6609659 6609686 -155990244 + (TC)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chrX 6609686 6609708 -155990222 + AT_rich Low_complexity Low_complexity 1 22 0 2988 103 15 5 chrX 6610722 6611130 -155988800 - L1PB1 LINE L1 -1 6150 5739 552 45 0 0 chrX 6611130 6611196 -155988734 + L1P5 LINE L1 5623 5688 -463 256 114 0 0 chrX 6611196 6611240 -155988690 + Alu SINE Alu 257 300 0 541 151 8 14 chrX 6611240 6611343 -155988587 + L1P5 LINE L1 5676 5749 -402 2005 115 0 67 chrX 6611519 6611711 -155988219 - AluSc SINE Alu -1 308 146 2379 98 0 3 chrX 6611711 6612018 -155987912 - AluSg SINE Alu -4 306 1 2005 115 0 67 chrX 6612018 6612155 -155987775 - AluSc SINE Alu -163 146 1 23232 113 139 60 chrX 6614089 6619770 -155980160 - L1PA7 LINE L1 0 6154 12 1661 107 133 125 chrX 6620369 6620744 -155979186 - MER83B LTR ERV1 0 378 1 1547 181 88 9 chrX 6621742 6622078 -155977852 - MLT1A1 LTR MaLR -2 455 1 235 341 44 7 chrX 6623018 6623153 -155976777 + LTR16B LTR ERVL 167 306 -158 1303 206 0 0 chrX 6625201 6625434 -155974496 + AluJo SINE Alu 1 233 -79 716 212 206 21 chrX 6625438 6625627 -155974303 - MER58A DNA MER1_type 0 224 1 801 245 72 78 chrX 6626535 6626645 -155973285 - L1ME1 LINE L1 -20 6146 6037 1820 163 3 10 chrX 6626645 6626940 -155972990 - AluJb SINE Alu -19 293 1 801 245 72 78 chrX 6626940 6627164 -155972766 - L1ME1 LINE L1 -129 6037 5855 259 210 16 0 chrX 6627164 6627226 -155972704 + LTR66 LTR ERVL 377 439 -171 249 294 0 24 chrX 6627226 6627311 -155972619 - L1MC4 LINE L1 -1345 6697 6615 270 0 0 0 chrX 6627311 6627341 -155972589 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 1814 152 3 10 chrX 6627341 6627631 -155972299 - AluJo SINE Alu -24 288 1 1010 247 34 8 chrX 6627632 6627899 -155972031 - L1MD2 LINE L1 -515 5844 5571 224 326 97 14 chrX 6627969 6628113 -155971817 + MIR SINE MIR 64 219 -43 784 230 32 0 chrX 6628125 6628312 -155971618 + MER20B DNA MER1_type 2 194 -25 22 35 0 0 chrX 6628507 6628536 -155971394 + AT_rich Low_complexity Low_complexity 1 29 0 750 200 11 18 chrX 6629357 6629541 -155970389 - L1MB8 LINE L1 -1 6177 5984 254 253 162 0 chrX 6629680 6629834 -155970096 + MER96B DNA MER1_type? 1 179 -238 2176 103 0 0 chrX 6629916 6630224 -155969706 + AluSx SINE Alu 1 308 0 571 207 8 8 chrX 6630261 6630382 -155969548 + MER96B DNA MER1_type? 297 417 0 2191 144 14 11 chrX 6630867 6631228 -155968702 + L1MA8 LINE L1 5926 6287 -4 30 45 0 0 chrX 6632062 6632106 -155967824 + AT_rich Low_complexity Low_complexity 1 44 0 256 275 44 0 chrX 6632115 6632206 -155967724 + LTR33 LTR ERVL 27 121 -400 32 26 0 0 chrX 6632582 6632621 -155967309 + AT_rich Low_complexity Low_complexity 1 39 0 605 158 75 0 chrX 6632656 6632789 -155967141 - L1MB4 LINE L1 0 6180 6038 2939 188 33 5 chrX 6632816 6633385 -155966545 - L1MB3 LINE L1 -9 6174 5590 419 258 37 43 chrX 6634628 6634791 -155965139 - MER5A DNA MER1_type 0 189 28 1658 234 83 45 chrX 6634794 6635277 -155964653 - MLT1D LTR MaLR -3 502 2 235 238 24 24 chrX 6635516 6635642 -155964288 + (CCGCG)n Simple_repeat Simple_repeat 1 126 0 46 62 0 0 chrX 6635648 6635729 -155964201 + GC_rich Low_complexity Low_complexity 1 81 0 1738 162 14 17 chrX 6636022 6636319 -155963611 - AluJo SINE Alu -16 296 1 780 153 51 0 chrX 6636320 6636438 -155963492 - AluJo/FLAM SINE Alu -186 126 3 210 71 0 0 chrX 6637282 6637310 -155962620 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 287 248 28 55 chrX 6637532 6637641 -155962289 - MIR SINE MIR -64 144 39 240 35 0 0 chrX 6638180 6638209 -155961721 + (TTG)n Simple_repeat Simple_repeat 2 30 0 805 169 0 8 chrX 6638213 6638337 -155961593 - FLAM_C SINE Alu -19 124 2 218 307 59 10 chrX 6640934 6641035 -155958895 - L2 LINE L2 0 3313 3208 460 322 50 32 chrX 6641162 6641445 -155958485 - L2 LINE L2 -339 2975 2688 2270 204 8 6 chrX 6641445 6641920 -155958010 + L1MD3 LINE L1 7398 7873 -122 509 114 190 0 chrX 6641923 6642048 -155957882 - MSTD LTR MaLR -8 383 199 1317 203 117 34 chrX 6642062 6642480 -155957450 + MER92B LTR ERV1 184 636 0 232 150 50 0 chrX 6643294 6643354 -155956576 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 785 211 23 6 chrX 6643415 6643586 -155956344 - MER92B LTR ERV1 -462 174 1 2317 173 22 10 chrX 6644095 6644512 -155955418 + L1PB4 LINE L1 5620 6041 -115 * 9180 178 8 4 chrX 6644511 6646200 -155953730 + L1P LINE L1 3707 5403 -743 2000 143 102 6 chrX 6646205 6646547 -155953383 - THE1C LTR MaLR 0 375 1 9410 117 74 17 chrX 6646547 6648040 -155951890 - THE1C-int LTR MaLR 0 1580 4 921 208 25 72 chrX 6648040 6648276 -155951654 - MER50 LTR ERV1 0 734 510 3049 235 14 8 chrX 6648508 6648870 -155951060 - L1 LINE L1 -1619 5229 4870 565 91 13 0 chrX 6648870 6648947 -155950983 - MADE1 DNA Mariner -2 78 1 3049 235 14 8 chrX 6648947 6649321 -155950609 - L1 LINE L1 -1978 4870 4489 2212 143 68 0 chrX 6650312 6650677 -155949253 - MLT1B LTR MaLR 0 390 1 333 280 159 34 chrX 6650971 6651210 -155948720 - L1 LINE L1 -5484 1365 1097 324 59 137 0 chrX 6651393 6651546 -155948384 + (TA)n Simple_repeat Simple_repeat 2 175 0 281 67 0 22 chrX 6653101 6653146 -155946784 + (CTG)n Simple_repeat Simple_repeat 2 45 0 313 202 81 30 chrX 6653872 6654024 -155945906 + MER4C-int LTR ERV1 1295 3316 -3015 8696 192 45 56 chrX 6654025 6655919 -155944011 + MER4C-int LTR ERV1 2041 3955 -2777 2406 84 0 3 chrX 6655919 6656215 -155943715 + AluSg SINE Alu 1 295 -15 8696 192 45 56 chrX 6656215 6656771 -155943159 + MER4C-int LTR ERV1 3955 6006 -726 422 36 18 0 chrX 6656797 6656853 -155943077 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 710 222 7 0 chrX 6656874 6657018 -155942912 + MER4C-int LTR ERV1 5852 5996 -335 410 240 37 141 chrX 6657106 6657348 -155942582 + MER4C-int LTR ERV1 6368 6584 -14 835 224 41 129 chrX 6657364 6657874 -155942056 + MER4C LTR ERV1 1 465 0 1826 235 75 27 chrX 6657874 6658722 -155941208 + L1MCb LINE L1 815 1700 -4856 297 376 12 18 chrX 6658806 6658976 -155940954 - L1PBb LINE L1 -5641 1944 1776 230 306 84 58 chrX 6659227 6659488 -155940442 - L1PBb LINE L1 -5782 1803 1536 370 370 52 35 chrX 6659560 6659733 -155940197 - L1PBb LINE L1 -6018 1567 1392 849 277 36 27 chrX 6660079 6660490 -155939440 - L1PBb LINE L1 -7166 415 1 615 236 0 0 chrX 6661367 6661477 -155938453 + FLAM_A SINE Alu 1 110 -32 2253 117 0 0 chrX 6661538 6661847 -155938083 - AluY SINE Alu -2 309 1 194 225 0 0 chrX 6661994 6662034 -155937896 + L2 LINE L2 3269 3308 -5 1711 255 38 36 chrX 6662265 6662822 -155937108 + MER74A LTR ERVL 1 558 0 933 199 6 17 chrX 6663189 6663370 -155936560 - MER5A DNA MER1_type -1 188 10 3349 206 73 9 chrX 6664571 6665743 -155934187 + L1MA9 LINE L1 4540 5855 -457 207 0 0 0 chrX 6665743 6665766 -155934164 + (CA)n Simple_repeat Simple_repeat 2 24 0 3349 206 73 9 chrX 6665766 6666256 -155933674 + L1MA9 LINE L1 5855 6312 0 258 304 36 18 chrX 6666720 6666832 -155933098 + MLT1H1 LTR MaLR 109 222 -333 1934 130 0 7 chrX 6667476 6667791 -155932139 + AluSx SINE Alu 3 315 0 22 70 0 0 chrX 6667894 6667937 -155931993 + AT_rich Low_complexity Low_complexity 1 43 0 28 48 0 0 chrX 6668414 6668456 -155931474 + AT_rich Low_complexity Low_complexity 1 42 0 406 300 175 21 chrX 6668818 6669098 -155930832 + L1MB2 LINE L1 103 425 -5855 1041 232 42 110 chrX 6669631 6670489 -155929441 + L1MB2 LINE L1 777 1656 -4657 22 35 0 0 chrX 6670624 6670653 -155929277 + AT_rich Low_complexity Low_complexity 1 29 0 2291 90 3 3 chrX 6670747 6671047 -155928883 + AluY SINE Alu 1 300 -11 216 0 0 0 chrX 6671137 6671161 -155928769 + (T)n Simple_repeat Simple_repeat 1 24 0 668 155 16 39 chrX 6671173 6671302 -155928628 + FLAM_C SINE Alu 2 127 -16 200 206 32 16 chrX 6671516 6671579 -155928351 + (TA)n Simple_repeat Simple_repeat 2 65 0 38 39 0 0 chrX 6672421 6672473 -155927457 + AT_rich Low_complexity Low_complexity 1 52 0 1264 172 5 0 chrX 6672595 6672804 -155927126 + AluJb SINE Alu 95 304 -8 1277 155 5 14 chrX 6672834 6673041 -155926889 + AluJo SINE Alu 1 205 -107 751 176 0 0 chrX 6673321 6673440 -155926490 - FLAM_C SINE Alu -20 123 5 985 273 24 60 chrX 6673493 6673959 -155925971 + MLT1D LTR MaLR 3 451 -54 1820 159 24 11 chrX 6673989 6674361 -155925569 - L1MA8 LINE L1 -6 6285 5909 671 227 0 0 chrX 6674362 6674490 -155925440 + FLAM_C SINE Alu 2 129 -4 360 0 0 0 chrX 6674491 6674531 -155925399 + (TG)n Simple_repeat Simple_repeat 2 41 0 475 117 61 6 chrX 6674534 6674697 -155925233 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 1550 216 37 117 chrX 6675180 6676149 -155923781 - L1M4c LINE L1 -4767 1617 777 1252 244 49 16 chrX 6676142 6676720 -155923210 + L1MB2 LINE L1 1924 2520 -3862 * 1186 242 16 22 chrX 6676712 6677076 -155922854 + L1MB2 LINE L1 4930 5291 -1091 * 892 202 98 7 chrX 6677072 6677363 -155922567 + L1MB2 LINE L1 6097 6373 -34 * 1281 242 60 23 chrX 6679686 6680037 -155919893 - MLT1A1 LTR MaLR -1 364 1 1550 179 50 0 chrX 6680098 6680377 -155919553 - MER1A DNA MER1_type -234 295 3 379 288 100 18 chrX 6680382 6680611 -155919319 - MER46C DNA MER2_type -90 248 1 25 31 0 0 chrX 6680673 6680705 -155919225 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chrX 6680734 6680763 -155919167 + AT_rich Low_complexity Low_complexity 1 29 0 318 89 0 0 chrX 6680763 6680808 -155919122 - AluSg/x SINE Alu -168 132 88 247 363 0 17 chrX 6680922 6681101 -155918829 + C-rich Low_complexity Low_complexity 2 177 0 * 252 272 20 54 chrX 6680969 6681116 -155918814 + (CCCCG)n Simple_repeat Simple_repeat 1 142 0 294 156 0 0 chrX 6681165 6681229 -155918701 + C-rich Low_complexity Low_complexity 1 64 0 295 236 11 34 chrX 6681294 6681383 -155918547 + C-rich Low_complexity Low_complexity 3 89 0 333 98 92 7 chrX 6681613 6681766 -155918164 + (TA)n Simple_repeat Simple_repeat 1 166 0 379 142 68 0 chrX 6681819 6681981 -155917949 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 304 136 64 0 chrX 6681996 6682121 -155917809 + (TTATA)n Simple_repeat Simple_repeat 2 134 0 451 125 65 0 chrX 6682136 6682304 -155917626 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 799 201 26 0 chrX 6682317 6682471 -155917459 + FRAM SINE Alu 1 152 -24 2227 121 0 0 chrX 6683700 6684006 -155915924 - AluSx SINE Alu -5 307 2 183 353 128 32 chrX 6685572 6685821 -155914109 - L2 LINE L2 -649 2665 2393 924 68 53 0 chrX 6686475 6686607 -155913323 - MER85 DNA T2_type 0 139 1 657 265 10 15 chrX 6687335 6687539 -155912391 + L2 LINE L2 648 850 -2464 355 266 53 111 chrX 6687593 6687819 -155912111 - MIR SINE MIR -49 213 1 497 306 174 29 chrX 6687820 6688205 -155911725 + L2 LINE L2 850 1290 -2024 231 114 0 0 chrX 6688338 6688373 -155911557 + (TTC)n Simple_repeat Simple_repeat 2 36 0 1403 134 5 0 chrX 6690588 6690812 -155909118 + L1PA15 LINE L1 5936 6160 -5 413 272 164 76 chrX 6692261 6692883 -155907047 + L1M2 LINE L1 527 1203 -5646 941 113 0 0 chrX 6692950 6693091 -155906839 + AluSp/q SINE Alu 173 313 0 1906 109 40 0 chrX 6693540 6693688 -155906242 - AluSx SINE Alu -25 287 146 420 71 0 0 chrX 6693688 6693744 -155906186 + (TTG)n Simple_repeat Simple_repeat 1 56 0 1906 109 40 0 chrX 6693744 6693871 -155906059 - AluSx SINE Alu -166 146 1 2421 28 0 0 chrX 6694886 6695172 -155904758 + L1PA4 LINE L1 5867 6152 -3 198 0 0 0 chrX 6695258 6695280 -155904650 + (TG)n Simple_repeat Simple_repeat 1 22 0 2323 90 3 0 chrX 6695283 6695583 -155904347 - AluSq SINE Alu -12 301 1 187 302 16 0 chrX 6695924 6695987 -155903943 - L3b LINE CR1 -351 1232 1169 25 51 0 0 chrX 6696329 6696368 -155903562 + AT_rich Low_complexity Low_complexity 1 39 0 2200 116 137 11 chrX 6696468 6696848 -155903082 - MSTA LTR MaLR 0 428 1 299 308 93 6 chrX 6697863 6698035 -155901895 - MARNA DNA Mariner -108 478 292 223 318 30 23 chrX 6698054 6698186 -155901744 + (CATG)n Simple_repeat Simple_repeat 1 133 0 2080 199 28 37 chrX 6698442 6698950 -155900980 - MLT1D LTR MaLR -2 503 1 1243 229 75 5 chrX 6699591 6699975 -155899955 - L1M4 LINE L1 -976 5170 4760 798 276 89 13 chrX 6700066 6700526 -155899404 - MER20B DNA MER1_type -80 703 209 2973 70 0 12 chrX 6701660 6702074 -155897856 - L1PA8A LINE L1 -4 6127 5719 1913 129 0 3 chrX 6702077 6702402 -155897528 + L1P LINE L1 4600 4923 -1223 1895 65 0 8 chrX 6702471 6702716 -155897214 - L1PA5 LINE L1 -4 6150 5908 1054 88 0 0 chrX 6702816 6702953 -155896977 + AluSg/x SINE Alu 171 307 -5 740 226 91 68 chrX 6702953 6703262 -155896668 + MLT1C LTR MaLR 88 403 -64 214 370 14 0 chrX 6703315 6703388 -155896542 + L2 LINE L2 2567 2640 -674 231 36 0 0 chrX 6703430 6703458 -155896472 + (TC)n Simple_repeat Simple_repeat 1 28 0 410 317 72 0 chrX 6703853 6704020 -155895910 - MIR SINE MIR -3 259 81 24 0 0 0 chrX 6704024 6704048 -155895882 + AT_rich Low_complexity Low_complexity 1 24 0 6469 135 10 3 chrX 6704050 6705425 -155894505 - L1MA2 LINE L1 0 6304 4922 22 70 0 0 chrX 6705730 6705773 -155894157 + AT_rich Low_complexity Low_complexity 1 43 0 215 137 55 0 chrX 6705776 6705849 -155894081 + (TA)n Simple_repeat Simple_repeat 1 77 0 22 0 0 0 chrX 6706060 6706082 -155893848 + AT_rich Low_complexity Low_complexity 1 22 0 394 222 28 6 chrX 6706131 6706483 -155893447 + (TA)n Simple_repeat Simple_repeat 1 360 0 344 290 107 76 chrX 6708495 6708560 -155891370 - MIR SINE MIR -31 231 169 1353 268 76 16 chrX 6708560 6709046 -155890884 - MLT2B2 LTR ERVL 0 515 1 344 290 107 76 chrX 6709046 6709204 -155890726 - MIR SINE MIR -93 169 1 826 232 30 15 chrX 6710192 6710436 -155889494 + L1 LINE L1 5024 5274 -872 298 0 23 23 chrX 6710436 6710479 -155889451 + (TA)n Simple_repeat Simple_repeat 1 43 0 826 232 30 15 chrX 6710479 6710497 -155889433 + L1 LINE L1 5274 5290 -856 234 0 0 0 chrX 6710501 6710527 -155889403 + (CAT)n Simple_repeat Simple_repeat 1 26 0 334 309 61 44 chrX 6712017 6712677 -155887253 + L1M4 LINE L1 2248 2918 -3228 363 23 0 0 chrX 6712850 6712894 -155887036 + (TG)n Simple_repeat Simple_repeat 1 44 0 264 253 13 0 chrX 6712952 6713031 -155886899 + L1MC5 LINE L1 7809 7888 -73 411 321 91 49 chrX 6713173 6713578 -155886352 - L1MC4a LINE L1 -1866 5942 5521 3911 89 2 34 chrX 6714019 6714615 -155885315 + L1PB1 LINE L1 5575 6151 0 186 358 220 0 chrX 6715333 6715506 -155884424 - MIR SINE MIR -21 241 31 284 157 84 36 chrX 6715605 6715688 -155884242 - L1MB3 LINE L1 -1 6182 6096 2819 128 49 16 chrX 6715788 6716121 -155883809 + L1MB1 LINE L1 5158 5525 -809 2102 121 0 0 chrX 6716121 6716435 -155883495 + AluSx SINE Alu 1 314 0 2819 128 49 16 chrX 6716435 6716706 -155883224 + L1MB1 LINE L1 5525 5786 -548 846 125 0 0 chrX 6716710 6716830 -155883100 - AluSg/x SINE Alu -41 271 152 1507 180 23 0 chrX 6716830 6717130 -155882800 + L1MB1 LINE L1 5789 6095 -73 1861 163 0 23 chrX 6717547 6717854 -155882076 - AluJb SINE Alu -12 300 1 351 206 62 10 chrX 6717863 6717960 -155881970 + MER5C DNA MER1_type 212 313 -11 24 0 0 0 chrX 6718250 6718274 -155881656 + AT_rich Low_complexity Low_complexity 1 24 0 3080 129 20 8 chrX 6718274 6718785 -155881145 - L1PB4 LINE L1 -8 6148 5632 2157 126 3 28 chrX 6719046 6719364 -155880566 - AluJb SINE Alu -2 310 1 1099 179 1 15 chrX 6719652 6719865 -155880065 + MLT1E LTR MaLR 380 545 -4 2204 140 22 36 chrX 6723774 6724187 -155875743 + Tigger2a DNA MER2_type 2 408 -26 234 0 0 0 chrX 6724589 6724615 -155875315 + (A)n Simple_repeat Simple_repeat 1 26 0 216 152 22 43 chrX 6724963 6725009 -155874921 + CT-rich Low_complexity Low_complexity 1 45 0 312 302 8 8 chrX 6725223 6725349 -155874581 + (TA)n Simple_repeat Simple_repeat 2 127 0 966 253 101 22 chrX 6725551 6725867 -155874063 + MLT1E LTR MaLR 15 355 -238 507 222 0 0 chrX 6727409 6727526 -155872404 + (TA)n Simple_repeat Simple_repeat 1 117 0 315 269 0 43 chrX 6727531 6727624 -155872306 - L1MC4 LINE L1 -1339 6703 6615 426 176 0 0 chrX 6727633 6727718 -155872212 + (TA)n Simple_repeat Simple_repeat 2 86 0 1060 144 26 0 chrX 6728005 6728200 -155871730 - L1MB7 LINE L1 -241 5943 5744 306 231 0 0 chrX 6728255 6728346 -155871584 + (TG)n Simple_repeat Simple_repeat 2 92 0 625 236 66 33 chrX 6728595 6728807 -155871123 + MER20 DNA MER1_type 1 219 0 3051 22 0 0 chrX 6731032 6731397 -155868533 - L1P2 LINE L1 -383 5771 5407 862 233 57 28 chrX 6732044 6732396 -155867534 + L1M4 LINE L1 2640 3001 -3145 1690 154 79 25 chrX 6733050 6733091 -155866839 - THE1C LTR MaLR 0 375 338 2035 116 0 0 chrX 6733091 6733368 -155866562 + AluSx SINE Alu 1 277 -35 1690 154 79 25 chrX 6733368 6733682 -155866248 - THE1C LTR MaLR -37 338 1 2193 107 7 0 chrX 6734265 6734555 -155865375 - AluSq SINE Alu -20 293 2 422 272 53 0 chrX 6735256 6735370 -155864560 - L2 LINE L2 -1 3312 3193 942 361 102 23 chrX 6736042 6737281 -155862649 + L2 LINE L2 1726 3062 -210 369 198 117 0 chrX 6737567 6737678 -155862252 + L1ME3A LINE L1 5458 5581 -585 775 225 120 8 chrX 6737780 6738038 -155861892 + L1ME3A LINE L1 5876 6162 -8 617 249 107 0 chrX 6738045 6738270 -155861660 - L1ME3A LINE L1 -54 6116 5868 225 235 0 0 chrX 6738281 6738332 -155861598 - L2 LINE L2 -962 2352 2302 434 272 44 9 chrX 6738505 6738619 -155861311 + L2 LINE L2 3186 3303 -10 456 265 27 7 chrX 6739153 6739300 -155860630 + MER45R DNA AcHobo 418 567 -1014 557 243 7 0 chrX 6739310 6739454 -155860476 - Tigger6a DNA MER2_type -542 541 397 324 115 0 9 chrX 6740332 6740396 -155859534 + Alu SINE Alu 1 46 -256 1047 196 33 9 chrX 6740600 6740814 -155859116 - MER20 DNA MER1_type 0 219 1 2267 110 0 16 chrX 6741144 6741453 -155858477 - AluSx SINE Alu -8 304 1 476 258 204 15 chrX 6742280 6742544 -155857386 + MLT1K LTR MaLR 256 569 -19 201 39 0 0 chrX 6743724 6743750 -155856180 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chrX 6744467 6744495 -155855435 + AT_rich Low_complexity Low_complexity 1 28 0 471 165 0 11 chrX 6745210 6745301 -155854629 + L1 LINE L1 4894 4983 -1163 2082 115 7 3 chrX 6745697 6745984 -155853946 - AluSx SINE Alu -24 288 1 271 337 11 80 chrX 6746204 6746391 -155853539 + L2 LINE L2 2992 3165 -107 481 266 22 43 chrX 6746407 6746546 -155853384 + MIR SINE MIR 2 137 -125 1499 211 14 6 chrX 6746936 6747297 -155852633 + L1MB8 LINE L1 5813 6176 -2 1619 98 10 0 chrX 6747309 6747513 -155852417 + AluSq SINE Alu 1 206 -107 337 119 0 0 chrX 6747514 6747573 -155852357 + AluSq SINE Alu 243 301 0 23 0 0 0 chrX 6747717 6747740 -155852190 + AT_rich Low_complexity Low_complexity 1 23 0 2137 162 11 11 chrX 6747745 6748110 -155851820 + MLT1A1 LTR MaLR 1 365 0 204 277 221 34 chrX 6748204 6748418 -155851512 + L2 LINE L2 1985 2248 -1066 333 0 0 0 chrX 6748418 6748455 -155851475 + (CA)n Simple_repeat Simple_repeat 2 38 0 204 277 221 34 chrX 6748455 6748475 -155851455 + L2 LINE L2 2248 2263 -1051 352 379 53 46 chrX 6748658 6749348 -155850582 + L2 LINE L2 2543 3272 0 26 30 0 0 chrX 6749887 6749920 -155850010 + AT_rich Low_complexity Low_complexity 1 33 0 2036 101 10 24 chrX 6751441 6751738 -155848192 - AluSq SINE Alu -16 297 5 1824 165 0 4 chrX 6751969 6752248 -155847682 + AluJb SINE Alu 1 278 -34 982 114 6 6 chrX 6752251 6752417 -155847513 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 750 288 10 0 chrX 6753210 6753415 -155846515 - MLT1E3 LTR MaLR 0 624 418 358 203 75 60 chrX 6753516 6753601 -155846329 - MLT1E1 LTR MaLR -354 300 211 2692 154 7 0 chrX 6753601 6754024 -155845906 + MSTC LTR MaLR 3 428 0 358 203 75 60 chrX 6754024 6754071 -155845859 - MLT1E1 LTR MaLR -443 211 166 * 625 230 0 0 chrX 6754057 6754183 -155845747 - MLT1E1 LTR MaLR -521 133 8 232 130 56 0 chrX 6754448 6754502 -155845428 + GA-rich Low_complexity Low_complexity 3 59 0 3426 130 5 0 chrX 6754531 6755144 -155844786 + L1PA16 LINE L1 5431 6160 -6 237 255 62 125 chrX 6755184 6755392 -155844538 - L2 LINE L2 0 3313 3119 426 221 215 0 chrX 6755976 6756134 -155843796 + L1MC2 LINE L1 6140 6331 -13 261 124 93 0 chrX 6756394 6756523 -155843407 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 3544 65 9 0 chrX 6756568 6757028 -155842902 - L1PA13 LINE L1 -4 6159 5696 253 275 81 47 chrX 6757077 6757335 -155842595 - L1M4 LINE L1 -1353 4793 4527 2401 60 0 0 chrX 6757385 6757700 -155842230 - AluY SINE Alu 0 315 1 1163 226 141 19 chrX 6757729 6758203 -155841727 - L1ME1 LINE L1 -18 6148 5617 388 289 58 5 chrX 6758229 6758437 -155841493 - L1M4 LINE L1 -1693 4453 4235 402 314 114 68 chrX 6759476 6759887 -155840043 - L1MEd LINE L1 -5674 445 16 639 124 0 0 chrX 6760751 6760840 -155839090 - AluSg/x SINE Alu -18 292 204 932 241 169 16 chrX 6761824 6762131 -155837799 - MLT1E LTR MaLR 0 593 240 297 250 0 0 chrX 6762331 6762395 -155837535 - HsTC2 DNA Tc2 -1798 100 37 860 143 0 7 chrX 6762451 6762591 -155837339 - L1MB8 LINE L1 -18 6160 6022 219 150 0 0 chrX 6762591 6762631 -155837299 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 228 156 0 0 chrX 6762638 6762670 -155837260 - 5S rRNA rRNA 0 121 90 549 15 0 0 chrX 6763071 6763136 -155836794 + L1PA4 LINE L1 6091 6155 0 2416 144 45 13 chrX 6763165 6763562 -155836368 + MSTB LTR MaLR 1 410 -16 339 291 100 0 chrX 6763845 6763955 -155835975 - MER103 DNA DNA -44 122 2 354 271 26 46 chrX 6764053 6764204 -155835726 - L3 LINE CR1 -627 950 803 1299 241 78 74 chrX 6765077 6765617 -155834313 + MLT1E LTR MaLR 52 593 0 265 321 9 36 chrX 6766997 6767109 -155832821 - MIR3 SINE MIR -8 200 92 6108 139 30 10 chrX 6767473 6769049 -155830881 + L1MA5A LINE L1 4685 6292 -5 420 309 62 14 chrX 6769231 6769441 -155830489 - MIR SINE MIR -12 250 31 1949 120 54 37 chrX 6769570 6769921 -155830009 - THE1C LTR MaLR -18 357 1 589 288 0 0 chrX 6770181 6770313 -155829617 + MER58A DNA MER1_type 1 132 0 302 318 11 0 chrX 6771117 6771205 -155828725 - MER63A DNA MER1_type -27 183 95 237 251 106 97 chrX 6771219 6771446 -155828484 + HAL1 LINE L1 2279 2507 0 453 322 52 14 chrX 6771458 6771669 -155828261 + MIR SINE MIR 34 252 -10 248 180 66 0 chrX 6772814 6772875 -155827055 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 399 291 20 92 chrX 6772993 6773340 -155826590 - L2 LINE L2 -1 3312 2991 1859 253 132 11 chrX 6773413 6773942 -155825988 - MLT1E LTR MaLR 0 593 1 254 188 0 0 chrX 6773948 6773996 -155825934 - L2 LINE L2 -498 2816 2769 445 115 16 0 chrX 6775747 6775808 -155824122 - AluS SINE Alu -250 63 2 25 0 0 0 chrX 6776294 6776319 -155823611 + AT_rich Low_complexity Low_complexity 1 25 0 392 302 0 0 chrX 6776730 6776836 -155823094 - MER5A DNA MER1_type -80 109 4 258 81 0 0 chrX 6777506 6777543 -155822387 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1580 177 38 13 chrX 6777599 6777915 -155822015 - MER33 DNA MER1_type 0 324 1 222 313 30 0 chrX 6777961 6778028 -155821902 + MIR3 SINE MIR 86 154 -54 217 369 0 0 chrX 6778689 6778754 -155821176 + L2 LINE L2 3207 3271 -1 1297 35 0 12 chrX 6779123 6779292 -155820638 + (GAA)n Simple_repeat Simple_repeat 1 167 0 321 68 0 0 chrX 6779292 6779336 -155820594 + (GA)n Simple_repeat Simple_repeat 1 44 0 1955 164 0 6 chrX 6779930 6780242 -155819688 + AluJo SINE Alu 1 310 -2 279 274 9 101 chrX 6780396 6780578 -155819352 - L2 LINE L2 -4 3309 3149 2379 219 41 2 chrX 6780578 6781062 -155818868 - MLT1D LTR MaLR 0 505 3 279 274 9 101 chrX 6781062 6781098 -155818832 - L2 LINE L2 -164 3149 3111 559 229 84 0 chrX 6781327 6781458 -155818472 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1385 176 24 0 chrX 6781456 6781706 -155818224 + Tigger3(Golem) DNA MER2_type 2772 3027 -2 248 227 0 0 chrX 6781884 6781928 -155818002 - MER2 DNA MER2_type -20 325 282 * 621 326 6 0 chrX 6781903 6782081 -155817849 - MER8 DNA MER2_type -60 179 1 1350 157 0 9 chrX 6782477 6782694 -155817236 + L1PA15 LINE L1 5949 6163 -2 2228 106 0 26 chrX 6783669 6783980 -155815950 - AluSx SINE Alu -9 303 1 2378 97 3 6 chrX 6784653 6784964 -155814966 - AluSx SINE Alu 0 312 3 459 0 0 0 chrX 6785919 6785970 -155813960 + (GA)n Simple_repeat Simple_repeat 1 51 0 11512 71 13 0 chrX 6786352 6787771 -155812159 - HERVL LTR ERVL -1400 4254 2818 1833 109 158 21 chrX 6787788 6788118 -155811812 - THE1C LTR MaLR 0 375 1 319 235 12 12 chrX 6788118 6788199 -155811731 + Charlie8 DNA MER1_type 341 421 -1996 229 273 0 30 chrX 6788211 6788277 -155811653 + Charlie8 DNA MER1_type 2344 2407 -10 1316 259 55 62 chrX 6788655 6788830 -155811100 + L1MCc LINE L1 10 185 -6238 3678 108 12 0 chrX 6788830 6789331 -155810599 + MER84 LTR ERV1 1 507 0 1316 259 55 62 chrX 6789331 6789387 -155810543 + L1MCc LINE L1 185 240 -6183 2277 118 0 0 chrX 6789387 6789693 -155810237 + AluY SINE Alu 1 306 -5 1316 259 55 62 chrX 6789693 6790038 -155809892 + L1MCc LINE L1 240 583 -5840 1735 262 68 61 chrX 6790145 6792036 -155807894 + L1MCc LINE L1 817 2923 -4199 343 232 0 24 chrX 6793254 6793336 -155806594 + MER116 DNA Mariner 1 80 0 921 86 7 13 chrX 6794354 6794506 -155805424 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1823 124 30 0 chrX 6794513 6794779 -155805151 - AluJb SINE Alu -38 274 1 625 242 122 95 chrX 6795786 6796241 -155803689 - MLT1G LTR MaLR -41 526 64 743 286 82 59 chrX 6796696 6797258 -155802672 + L1MCc LINE L1 3461 4035 -2906 333 249 100 73 chrX 6797269 6797567 -155802363 + L1MCc LINE L1 4059 4362 -2579 1354 93 0 0 chrX 6797683 6797855 -155802075 + AluY SINE Alu 128 299 -12 325 305 95 62 chrX 6797896 6799471 -155800459 + L1MCc LINE L1 4478 6103 -838 22 0 0 0 chrX 6799674 6799696 -155800234 + AT_rich Low_complexity Low_complexity 1 22 0 2390 99 0 0 chrX 6799708 6800012 -155799918 - AluSx SINE Alu -8 304 1 2294 99 0 10 chrX 6800906 6801218 -155798712 + AluSc SINE Alu 1 309 0 989 137 51 30 chrX 6801693 6801890 -155798040 - THE1C LTR MaLR 0 375 175 413 212 40 20 chrX 6801948 6802047 -155797883 + THE1B LTR MaLR 1 101 -274 463 101 14 0 chrX 6802147 6802216 -155797714 + THE1B LTR MaLR 295 364 0 2621 151 39 2 chrX 6802483 6802894 -155797036 + MSTB LTR MaLR 1 426 0 868 148 15 103 chrX 6803010 6803216 -155796714 + L1MD2 LINE L1 5826 6021 -143 205 333 28 0 chrX 6803630 6803702 -155796228 + L3 LINE CR1 1502 1575 -2 2030 127 19 6 chrX 6804439 6804753 -155795177 - L1MA10 LINE L1 -1 6333 6016 905 210 27 0 chrX 6805007 6805193 -155794737 - MER20 DNA MER1_type 0 219 29 414 311 152 7 chrX 6806225 6806495 -155793435 + L1ME3 LINE L1 5812 6120 -42 2231 185 70 8 chrX 6806791 6807155 -155792775 + L1MA8 LINE L1 5773 6176 -115 252 0 0 0 chrX 6807155 6807183 -155792747 + (CA)n Simple_repeat Simple_repeat 1 28 0 2231 185 70 8 chrX 6807183 6807304 -155792626 + L1MA8 LINE L1 6176 6288 -3 1677 172 0 7 chrX 6807334 6807625 -155792305 - AluSx SINE Alu -23 289 1 1983 99 13 40 chrX 6808214 6808516 -155791414 - L1PA16 LINE L1 -2 6164 5871 249 139 0 0 chrX 6808517 6808560 -155791370 + (T)n Simple_repeat Simple_repeat 1 43 0 394 239 43 34 chrX 6809136 6809253 -155790677 + MIR3 SINE MIR 12 129 -79 219 36 0 0 chrX 6809258 6809286 -155790644 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 2352 94 3 14 chrX 6859489 6859786 -155740144 + AluSp SINE Alu 1 294 -19 269 198 0 172 chrX 6860766 6860882 -155739048 + 5S rRNA rRNA 2 97 -24 321 188 0 75 chrX 6861810 6861890 -155738040 + 5S rRNA rRNA 2 75 -46 288 200 0 0 chrX 6862742 6862792 -155737138 + 5S rRNA rRNA 2 51 -70 315 190 0 172 chrX 6863672 6863788 -155736142 + 5S rRNA rRNA 2 97 -24 305 190 0 172 chrX 6864604 6864720 -155735210 + 5S rRNA rRNA 2 97 -24 284 198 0 172 chrX 6865535 6865651 -155734279 + 5S rRNA rRNA 2 97 -24 333 188 0 75 chrX 6866579 6866659 -155733271 + 5S rRNA rRNA 2 75 -46 1656 189 3 0 chrX 6867498 6867795 -155732135 - AluJb SINE Alu -14 298 1 809 302 127 18 chrX 6867799 6868289 -155731641 - HAL1 LINE L1 -351 2156 1614 1245 171 89 37 chrX 6868538 6868807 -155731123 - AluJb SINE Alu -29 283 1 2508 51 0 3 chrX 6868818 6869130 -155730800 - AluY SINE Alu 0 311 1 792 250 70 4 chrX 6869138 6869366 -155730564 - MER33 DNA MER1_type -47 277 35 836 168 0 7 chrX 6869889 6870032 -155729898 + FLAM_C SINE Alu 2 143 0 232 292 0 14 chrX 6870190 6870262 -155729668 + CT-rich Low_complexity Low_complexity 1 71 0 506 255 27 34 chrX 6870376 6870525 -155729405 - MIR SINE MIR -12 250 103 2399 70 0 0 chrX 6871967 6872268 -155727662 + AluY SINE Alu 1 301 -10 1293 151 9 9 chrX 6872654 6872872 -155727058 + AluJo SINE Alu 1 218 -94 287 167 0 33 chrX 6872874 6872934 -155726996 + AluJo SINE Alu 86 143 -159 552 190 51 118 chrX 6873060 6873255 -155726675 - L1M3 LINE L1 -550 5630 5449 831 195 0 7 chrX 6873925 6874074 -155725856 + AluJo SINE Alu 2 149 -163 1526 183 15 0 chrX 6874077 6874350 -155725580 + AluJb SINE Alu 18 294 -18 2016 223 35 68 chrX 6874401 6875006 -155724924 + L1ME1 LINE L1 5462 6046 -120 2595 145 20 86 chrX 6875007 6875251 -155724679 + MLT1D LTR MaLR 2 260 -245 1928 153 45 70 chrX 6875251 6875694 -155724236 - MSTB1 LTR MaLR 0 432 1 2595 145 20 86 chrX 6875694 6875920 -155724010 + MLT1D LTR MaLR 260 435 -70 587 197 354 36 chrX 6875920 6876039 -155723891 + AluJo SINE Alu 2 82 -220 2236 99 0 6 chrX 6876039 6876353 -155723577 + AluSx SINE Alu 1 312 0 587 197 354 36 chrX 6876353 6876456 -155723474 + AluJo SINE Alu 82 295 -7 2595 145 20 86 chrX 6876456 6876522 -155723408 + MLT1D LTR MaLR 435 504 -1 367 214 34 26 chrX 6876532 6876649 -155723281 + L1MA10 LINE L1 6210 6327 -7 1693 110 18 28 chrX 6876662 6876944 -155722986 - AluSx SINE Alu -13 299 21 1032 244 57 37 chrX 6877289 6877642 -155722288 + MLT1D LTR MaLR 1 360 -145 694 160 17 33 chrX 6877646 6877827 -155722103 + CT-rich Low_complexity Low_complexity 3 180 0 1758 171 3 3 chrX 6877833 6878143 -155721787 - AluJo SINE Alu -2 310 1 885 152 0 40 chrX 6878145 6878181 -155721749 + MLT1D LTR MaLR 357 393 -112 1922 181 72 84 chrX 6878181 6878220 -155721710 - MLT2B1 LTR ERVL 0 520 482 354 45 0 0 chrX 6878220 6878264 -155721666 + (TA)n Simple_repeat Simple_repeat 1 44 0 1922 181 72 84 chrX 6878264 6878749 -155721181 - MLT2B1 LTR ERVL -38 482 2 885 152 0 40 chrX 6878749 6878863 -155721067 + MLT1D LTR MaLR 393 501 -4 186 263 24 71 chrX 6878866 6878993 -155720937 + MIR SINE MIR 99 216 -46 481 146 10 10 chrX 6879222 6879325 -155720605 - MER96B DNA MER1_type? -246 171 69 1177 143 5 24 chrX 6879334 6879364 -155720566 + AluJb SINE Alu 106 135 -177 2041 91 0 11 chrX 6879364 6879701 -155720229 + AluSx SINE Alu 1 334 0 1177 143 5 24 chrX 6879701 6879878 -155720052 + AluJb SINE Alu 135 310 -2 594 254 62 18 chrX 6879937 6880161 -155719769 + Charlie4a DNA MER1_type 244 477 -31 1874 142 13 0 chrX 6880228 6880531 -155719399 - AluJb SINE Alu -5 307 1 2026 138 97 17 chrX 6880723 6881084 -155718846 - MLT1B LTR MaLR 0 390 1 2154 96 3 0 chrX 6881844 6882137 -155717793 + AluSx SINE Alu 1 294 -18 1827 155 0 37 chrX 6882395 6882718 -155717212 - AluJo SINE Alu 0 312 2 5506 165 32 29 chrX 6882729 6883805 -155716125 - L1MC2 LINE L1 0 6344 5266 241 229 0 0 chrX 6883787 6883843 -155716087 - L1MC4 LINE L1 -1333 6709 6653 * 339 25 0 0 chrX 6883843 6883883 -155716047 + (CA)n Simple_repeat Simple_repeat 2 41 0 490 101 14 0 chrX 6883898 6883967 -155715963 - AluJb SINE Alu -30 282 213 1558 208 72 24 chrX 6883993 6884411 -155715519 - L1MC2 LINE L1 -877 5269 4832 2242 74 13 10 chrX 6885738 6886049 -155713881 + AluSx SINE Alu 1 312 0 204 40 0 0 chrX 6887251 6887276 -155712654 + (CCG)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chrX 6887323 6887347 -155712583 + GC_rich Low_complexity Low_complexity 1 24 0 34 65 0 0 chrX 6887408 6887470 -155712460 + GC_rich Low_complexity Low_complexity 1 62 0 25 0 0 0 chrX 6887526 6887551 -155712379 + GC_rich Low_complexity Low_complexity 1 25 0 1958 95 7 7 chrX 6888745 6889029 -155710901 + AluSq SINE Alu 19 302 -11 2227 64 3 32 chrX 6889102 6889414 -155710516 + AluY SINE Alu 1 303 -8 448 204 49 49 chrX 6889922 6890064 -155709866 - LTR33 LTR ERVL 0 521 380 436 226 13 0 chrX 6890132 6890224 -155709706 + MLT1I LTR MaLR 60 154 -266 2523 55 0 0 chrX 6890224 6890534 -155709396 - AluY SINE Alu -1 310 1 322 302 12 0 chrX 6891522 6891608 -155708322 + GA-rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chrX 6892287 6892310 -155707620 + AT_rich Low_complexity Low_complexity 1 23 0 457 255 20 7 chrX 6892347 6892496 -155707434 - HAL1 LINE L1 -72 2435 2285 1164 208 99 70 chrX 6892600 6893085 -155706845 + L1MC5 LINE L1 7043 7541 -420 318 222 32 79 chrX 6893162 6893288 -155706642 + L1ME3A LINE L1 5962 6081 -89 1520 161 44 17 chrX 6893342 6893640 -155706290 - AluJo SINE Alu 0 312 7 2089 72 58 3 chrX 6894153 6894279 -155705651 + AluSc SINE Alu 1 119 -190 2643 60 12 0 chrX 6894279 6894613 -155705317 + L1PA7 LINE L1 5817 6154 0 2089 72 58 3 chrX 6894613 6894778 -155705152 + AluSc SINE Alu 119 308 -1 398 308 48 56 chrX 6895180 6895430 -155704500 + HERV16 LTR ERVL 402 649 -4347 195 42 0 0 chrX 6896829 6896853 -155703077 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 190 0 32 32 chrX 6897511 6897542 -155702388 + (TA)n Simple_repeat Simple_repeat 1 31 0 2210 90 3 3 chrX 6900267 6900567 -155699363 + AluSc SINE Alu 1 300 -9 1643 136 16 63 chrX 6900896 6901213 -155698717 - AluJo SINE Alu -10 302 1 793 236 22 6 chrX 6901419 6901597 -155698333 + MER5A DNA MER1_type 9 189 0 16078 112 14 17 chrX 6901714 6904104 -155695826 + Tigger1 DNA MER2_type 30 2412 -6 317 269 171 16 chrX 6904251 6904496 -155695434 + L1ME4a LINE L1 5757 6039 -82 1598 151 105 44 chrX 6905358 6905702 -155694228 - MLT1A1 LTR MaLR 0 365 1 219 283 179 55 chrX 6906081 6906226 -155693704 - MIR SINE MIR -12 250 88 220 291 128 51 chrX 6906724 6906841 -155693089 - MER5B DNA MER1_type -23 155 30 255 229 59 29 chrX 6907597 6907767 -155692163 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 * 349 249 34 17 chrX 6907721 6907898 -155692032 + (TA)n Simple_repeat Simple_repeat 1 180 0 1490 104 0 5 chrX 6907942 6908154 -155691776 + AluSg/x SINE Alu 87 297 -15 2541 43 0 0 chrX 6908233 6908537 -155691393 + AluY SINE Alu 1 304 -7 355 301 157 31 chrX 6909184 6909413 -155690517 + L2 LINE L2 3056 3313 0 1338 219 50 7 chrX 6909950 6910252 -155689678 - MER58B DNA MER1_type -18 323 9 256 302 47 9 chrX 6910617 6910723 -155689207 + L2 LINE L2 3156 3265 -7 1964 130 0 7 chrX 6911000 6911284 -155688646 + AluSx SINE Alu 1 282 -30 259 203 95 14 chrX 6911941 6912015 -155687915 + MLT1F LTR MaLR 1 80 -574 1767 223 126 27 chrX 6912298 6912855 -155687075 - MLT1E3 LTR MaLR -5 619 8 639 270 39 28 chrX 6913087 6913265 -155686665 + MER5A DNA MER1_type 4 183 -6 237 269 220 43 chrX 6913792 6913933 -155685997 + MIR SINE MIR 2 167 -95 1786 174 7 20 chrX 6913939 6914288 -155685642 + L1MB8 LINE L1 5263 5608 -566 1650 199 46 9 chrX 6914294 6914640 -155685290 - MLT1A1 LTR MaLR -6 359 1 2181 176 134 12 chrX 6914640 6915140 -155684790 + L1MB8 LINE L1 5603 6163 -15 3869 156 9 3 chrX 6915238 6915871 -155684059 + L1MB3 LINE L1 5544 6180 -3 1320 204 85 27 chrX 6917143 6917472 -155682458 + MLT1F LTR MaLR 193 540 -2 198 245 0 38 chrX 6917699 6917752 -155682178 + MIR SINE MIR 25 75 -133 484 243 5 19 chrX 6917892 6918078 -155681852 - MLT1E LTR MaLR -7 560 331 722 217 39 78 chrX 6918080 6918310 -155681620 - MLT1E LTR MaLR -370 223 3 551 221 0 10 chrX 6918348 6918452 -155681478 + MIR SINE MIR 6 108 -154 27 0 0 0 chrX 6919087 6919114 -155680816 + AT_rich Low_complexity Low_complexity 1 27 0 530 306 45 25 chrX 6919154 6919353 -155680577 + MIR SINE MIR 46 248 -14 271 231 130 59 chrX 6919501 6919670 -155680260 + MLT1H LTR MaLR 95 275 -274 536 243 28 0 chrX 6920106 6920250 -155679680 - L1MD2 LINE L1 0 6359 6212 481 296 58 17 chrX 6920296 6920468 -155679462 + MIR SINE MIR 72 250 -12 2418 262 67 39 chrX 6920615 6921543 -155678387 + HAL1b LINE L1 334 1293 -55 243 0 0 0 chrX 6921543 6921570 -155678360 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2418 262 67 39 chrX 6921570 6921628 -155678302 + HAL1b LINE L1 1293 1348 0 201 39 0 0 chrX 6922882 6922908 -155677022 + (TG)n Simple_repeat Simple_repeat 2 27 0 2579 66 0 0 chrX 6923123 6923427 -155676503 + AluY SINE Alu 1 304 -7 956 228 29 0 chrX 6924641 6924847 -155675083 - MER20 DNA MER1_type 0 219 8 467 319 24 24 chrX 6924855 6925065 -155674865 + LTR16B LTR ERVL 197 406 -58 4945 129 39 14 chrX 6925115 6925877 -155674053 - MER41-int LTR ERV1 -3115 2831 2051 1345 152 0 15 chrX 6925878 6926125 -155673805 - AluJb SINE Alu 0 327 84 767 233 7 0 chrX 6926125 6926275 -155673655 - MER5A DNA MER1_type -38 151 1 315 305 64 35 chrX 6926358 6926499 -155673431 - MIR3 SINE MIR -27 181 37 23 0 0 0 chrX 6927256 6927279 -155672651 + AT_rich Low_complexity Low_complexity 1 23 0 868 321 25 101 chrX 6928574 6929184 -155670746 - Tigger8 DNA MER2_type -6 660 110 4186 33 0 0 chrX 6929184 6929643 -155670287 - L1PA6 LINE L1 -13 6141 5683 868 321 25 101 chrX 6929643 6929745 -155670185 - Tigger8 DNA MER2_type -556 110 2 959 174 43 22 chrX 6930181 6930365 -155669565 - MER20 DNA MER1_type 0 219 32 427 313 16 11 chrX 6930786 6930968 -155668962 + L1ME4a LINE L1 5726 5908 -213 1637 184 16 29 chrX 6932147 6932463 -155667467 + AluJo SINE Alu 1 312 0 278 326 31 0 chrX 6932535 6932633 -155667297 + MIR3 SINE MIR 108 208 0 314 374 108 28 chrX 6934337 6934586 -155665344 + L2 LINE L2 2976 3244 -28 424 289 46 33 chrX 6934978 6935130 -155664800 + MIR SINE MIR 4 157 -105 2558 196 10 6 chrX 6935462 6935963 -155663967 + L1MD3 LINE L1 7366 7868 -127 1786 136 72 0 chrX 6936422 6936714 -155663216 - AluSx SINE Alu 0 311 1 191 294 164 34 chrX 6936883 6937029 -155662901 + MIR SINE MIR 47 211 -51 279 0 0 0 chrX 6937430 6937461 -155662469 + (TG)n Simple_repeat Simple_repeat 1 31 0 495 267 50 22 chrX 6937578 6937758 -155662172 + L1MC4 LINE L1 7356 7540 -502 898 204 32 16 chrX 6937758 6937944 -155661986 - MER20 DNA MER1_type 0 219 31 186 43 0 0 chrX 6938353 6938376 -155661554 + (T)n Simple_repeat Simple_repeat 1 23 0 990 114 15 0 chrX 6938438 6938569 -155661361 + FLAM_C SINE Alu 1 133 0 1019 139 0 6 chrX 6939175 6939333 -155660597 + L1MA5A LINE L1 6134 6290 -7 21 36 0 0 chrX 6939333 6939361 -155660569 + AT_rich Low_complexity Low_complexity 1 28 0 853 133 0 0 chrX 6939372 6939492 -155660438 - FRAM SINE Alu -20 156 37 943 122 0 10 chrX 6940586 6940770 -155659160 - AluJb SINE Alu -54 258 1 337 234 170 28 chrX 6940899 6941040 -155658890 + MER5A DNA MER1_type 26 186 -3 661 249 57 24 chrX 6942503 6942712 -155657218 + MIR SINE MIR 23 238 -24 986 210 119 32 chrX 6942719 6943091 -155656839 - MLT1C LTR MaLR -35 432 13 1929 268 37 54 chrX 6943179 6944094 -155655836 - L1M4 LINE L1 -2576 3570 2671 240 292 26 0 chrX 6944671 6944784 -155655146 + (TA)n Simple_repeat Simple_repeat 1 116 0 212 193 46 28 chrX 6944746 6944855 -155655075 + (TTATA)n Simple_repeat Simple_repeat 2 112 0 * 22 0 0 0 chrX 6944876 6944898 -155655032 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 22 17 chrX 6944902 6945134 -155654796 + (TA)n Simple_repeat Simple_repeat 1 233 0 22 0 0 0 chrX 6945134 6945156 -155654774 + AT_rich Low_complexity Low_complexity 1 22 0 323 152 217 43 chrX 6945248 6945340 -155654590 + ORSL DNA AcHobo 161 268 -7 1710 121 118 7 chrX 6946023 6946295 -155653635 + AluJo SINE Alu 1 302 -10 2030 142 0 7 chrX 6946408 6946704 -155653226 - AluSx SINE Alu -18 294 1 951 283 51 20 chrX 6946932 6947324 -155652606 + L1ME1 LINE L1 4911 5314 -832 1236 237 15 4 chrX 6947324 6947594 -155652336 - AluJo SINE Alu -2 310 38 1917 203 116 51 chrX 6947594 6947769 -155652161 + L1ME1 LINE L1 5320 5482 -684 2112 127 7 7 chrX 6947769 6948077 -155651853 + AluJb SINE Alu 1 308 -4 1917 203 116 51 chrX 6948077 6948488 -155651442 + L1ME1 LINE L1 5482 5944 -222 578 172 43 17 chrX 6948493 6948609 -155651321 + MER45A DNA AcHobo 60 178 0 2030 123 0 0 chrX 6949967 6950244 -155649686 - AluSx SINE Alu -35 277 1 252 0 0 0 chrX 6950600 6950628 -155649302 + (TG)n Simple_repeat Simple_repeat 2 29 0 1256 276 131 16 chrX 6950851 6951278 -155648652 - MLT1G1 LTR MaLR -73 522 47 190 305 55 70 chrX 6952707 6952835 -155647095 - L2 LINE L2 -1 3312 3187 765 256 39 62 chrX 6953162 6953430 -155646500 + L1ME3 LINE L1 5862 6124 -38 1499 172 15 8 chrX 6953430 6953697 -155646233 + AluJb SINE Alu 1 269 -43 765 256 39 62 chrX 6953697 6953736 -155646194 + L1ME3 LINE L1 6124 6162 0 7189 194 53 77 chrX 6953794 6955834 -155644096 + L1MC4a LINE L1 5817 7808 0 213 179 0 0 chrX 6956015 6956054 -155643876 - MIR SINE MIR -108 154 116 224 264 11 55 chrX 6956191 6956282 -155643648 + GA-rich Low_complexity Low_complexity 4 90 0 446 131 9 37 chrX 6956644 6956751 -155643179 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 1809 140 7 4 chrX 6956929 6957200 -155642730 - AluJo SINE Alu -17 295 24 529 289 128 38 chrX 6957203 6957376 -155642554 - L2 LINE L2 -12 3301 3145 1476 114 274 0 chrX 6957376 6957613 -155642317 + AluSx SINE Alu 1 302 0 529 289 128 38 chrX 6957613 6957910 -155642020 - L2 LINE L2 -168 3145 2791 940 231 15 0 chrX 6959218 6959417 -155640513 - L1MC4a LINE L1 -960 6848 6647 2633 222 1 39 chrX 6959717 6960366 -155639564 - L1M4 LINE L1 -1101 5045 4421 364 280 7 53 chrX 6961228 6961378 -155638552 - LTR16B LTR ERVL -321 143 1 2176 66 4 4 chrX 6961577 6961848 -155638082 - AluSq SINE Alu -7 306 36 325 232 40 111 chrX 6963037 6963235 -155636695 + L2 LINE L2 3118 3301 -12 3490 206 15 48 chrX 6964183 6964673 -155635257 + L1ME1 LINE L1 5343 5795 -371 1863 153 7 17 chrX 6964673 6964968 -155634962 + AluJo SINE Alu 1 292 -20 3490 206 15 48 chrX 6964968 6965325 -155634605 + L1ME1 LINE L1 5795 6162 -4 738 303 71 29 chrX 6965462 6965842 -155634088 - Charlie7 DNA MER1_type -1923 689 294 1597 141 23 19 chrX 6965986 6966249 -155633681 - AluJo SINE Alu -6 306 43 2289 115 0 3 chrX 6966259 6966572 -155633358 - AluSx SINE Alu 0 312 1 1719 174 0 14 chrX 6967139 6967432 -155632498 + AluJb SINE Alu 12 300 -12 864 201 34 0 chrX 6967565 6967744 -155632186 - MER20 DNA MER1_type -1 218 34 702 126 0 0 chrX 6967989 6968092 -155631838 + AluSg/x SINE Alu 208 310 0 773 154 32 0 chrX 6968253 6968376 -155631554 + FLAM_C SINE Alu 2 128 -5 24 32 0 0 chrX 6968381 6968412 -155631518 + AT_rich Low_complexity Low_complexity 1 31 0 466 291 179 22 chrX 6968562 6968881 -155631049 - L2 LINE L2 -7 3265 2897 209 295 189 18 chrX 6969388 6969605 -155630325 - L2 LINE L2 -833 2481 2228 338 178 55 0 chrX 6969676 6969749 -155630181 - MER5A DNA MER1_type -110 79 3 422 288 20 0 chrX 6969943 6970089 -155629841 - MER104 DNA Tc2 -26 154 6 2279 107 3 0 chrX 6970471 6970769 -155629161 + AluSx SINE Alu 1 299 -13 845 90 14 14 chrX 6970773 6970917 -155629013 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 1806 136 15 0 chrX 6971029 6971302 -155628628 - L1PA15 LINE L1 0 6165 5889 267 226 50 0 chrX 6973011 6973101 -155626829 + MER5A DNA MER1_type 4 99 -90 716 267 52 9 chrX 6973155 6973365 -155626565 + MER58A DNA MER1_type 1 219 -5 420 144 62 33 chrX 6973429 6973920 -155626010 + GA-rich Low_complexity Low_complexity 1 505 0 200 179 27 54 chrX 6973936 6974048 -155625882 + GA-rich Low_complexity Low_complexity 1 109 0 2032 102 18 7 chrX 6974510 6974784 -155625146 + AluSg SINE Alu 2 278 -32 189 74 0 0 chrX 6974784 6974811 -155625119 + (GA)n Simple_repeat Simple_repeat 2 28 0 1580 149 29 40 chrX 6976001 6976276 -155623654 + AluJo SINE Alu 5 276 -36 739 172 0 22 chrX 6976622 6976756 -155623174 - MLT1C LTR MaLR 0 467 337 978 182 0 0 chrX 6976802 6976978 -155622952 - FRAM SINE Alu 0 176 1 1386 185 89 15 chrX 6976979 6977304 -155622626 - MLT1C LTR MaLR -115 352 4 191 287 0 46 chrX 6977734 6977821 -155622109 + L2 LINE L2 2871 2953 -319 2145 127 0 0 chrX 6977875 6978200 -155621730 + AluSx SINE Alu 2 312 0 266 299 0 0 chrX 6979659 6979726 -155620204 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 201 74 0 0 chrX 6981413 6981440 -155618490 + (TG)n Simple_repeat Simple_repeat 1 27 0 203 161 0 0 chrX 6981440 6981471 -155618459 + (CA)n Simple_repeat Simple_repeat 1 31 0 2541 176 12 16 chrX 6981986 6982470 -155617460 + L1MB5 LINE L1 5674 6155 -19 433 241 188 0 chrX 6982850 6982983 -155616947 + MER5A DNA MER1_type 7 164 -25 2200 120 3 7 chrX 6983392 6983693 -155616237 - AluSx SINE Alu -10 302 3 326 252 53 8 chrX 6983828 6983959 -155615971 - L2 LINE L2 -811 2503 2367 817 176 0 0 chrX 6983989 6984114 -155615816 + AluJ SINE Alu 1 125 -187 444 89 38 0 chrX 6984114 6984193 -155615737 + (TA)n Simple_repeat Simple_repeat 2 83 0 1168 148 23 0 chrX 6984193 6984369 -155615561 + AluJ SINE Alu 133 312 0 22 35 0 0 chrX 6984885 6984914 -155615016 + AT_rich Low_complexity Low_complexity 1 29 0 35 54 0 0 chrX 6984982 6985038 -155614892 + AT_rich Low_complexity Low_complexity 1 56 0 578 193 379 0 chrX 6985759 6985899 -155614031 + Tigger5 DNA MER2_type 1 193 -2130 339 237 0 13 chrX 6985901 6985977 -155613953 + Tigger5 DNA MER2_type 2248 2322 -1 616 299 22 9 chrX 6986097 6986321 -155613609 - MLT1J2 LTR MaLR -223 227 1 387 283 10 0 chrX 6986716 6986815 -155613115 + MER58A DNA MER1_type 1 100 -124 2060 138 3 0 chrX 6986820 6987109 -155612821 + AluJo SINE Alu 1 290 -22 21 36 0 0 chrX 6987109 6987137 -155612793 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 6988044 6988069 -155611861 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 6988467 6988489 -155611441 + AT_rich Low_complexity Low_complexity 1 22 0 487 208 57 78 chrX 6989837 6989887 -155610043 - MER5A DNA MER1_type 0 189 139 2122 145 0 0 chrX 6989887 6990197 -155609733 - AluJo SINE Alu -2 310 1 487 208 57 78 chrX 6990197 6990338 -155609592 - MER5A DNA MER1_type -50 139 2 1672 174 3 17 chrX 6990872 6991166 -155608764 + AluJo SINE Alu 1 290 -22 276 278 0 33 chrX 6991353 6991443 -155608487 + GA-rich Low_complexity Low_complexity 4 90 0 304 366 0 13 chrX 6991938 6992091 -155607839 + (CA)n Simple_repeat Simple_repeat 2 152 0 * 316 369 20 7 chrX 6991989 6992138 -155607792 + (CACG)n Simple_repeat Simple_repeat 4 154 0 * 331 273 56 28 chrX 6992100 6992243 -155607687 + (CATG)n Simple_repeat Simple_repeat 1 147 0 769 188 0 0 chrX 6994581 6994714 -155605216 + AluJb SINE Alu 2 134 -178 1751 172 30 0 chrX 6994721 6995056 -155604874 + AluJb SINE Alu 1 344 0 572 158 9 0 chrX 6995371 6995485 -155604445 + CT-rich Low_complexity Low_complexity 3 117 0 2266 155 25 59 chrX 6995674 6995970 -155603960 + Tigger2a DNA MER2_type 6 284 -2424 2059 133 0 7 chrX 6995970 6996272 -155603658 - AluJb SINE Alu -10 302 3 2266 155 25 59 chrX 6996272 6996419 -155603511 + Tigger2a DNA MER2_type 284 434 0 1231 207 29 42 chrX 6997073 6997382 -155602548 + MER33 DNA MER1_type 17 321 -3 1771 150 52 0 chrX 6997396 6997708 -155602222 - AluJb SINE Alu 0 326 1 215 156 0 22 chrX 6997753 6997798 -155602132 + MIR3 SINE MIR 111 154 -54 197 336 37 37 chrX 6997901 6998008 -155601922 + MIR SINE MIR 20 126 -136 1778 163 10 0 chrX 6999026 6999321 -155600609 + AluJo SINE Alu 1 298 -14 1894 159 3 34 chrX 6999561 6999881 -155600049 - AluJb SINE Alu 0 312 3 2037 106 10 36 chrX 6999912 7000215 -155599715 - AluSx SINE Alu -17 295 1 443 252 56 0 chrX 7000425 7000568 -155599362 - HAL1 LINE L1 -1234 1273 1123 400 307 24 54 chrX 7000623 7000789 -155599141 + LTR16C LTR ERVL 54 214 -277 1072 234 38 62 chrX 7000789 7001110 -155598820 - L1MD2 LINE L1 -289 5885 5580 25 0 0 0 chrX 7002021 7002046 -155597884 + AT_rich Low_complexity Low_complexity 1 25 0 1830 209 70 27 chrX 7003175 7003692 -155596238 + MLT1F LTR MaLR 4 542 0 1988 139 10 10 chrX 7004117 7004399 -155595531 + AluSx SINE Alu 1 285 -178 240 35 0 0 chrX 7004399 7004428 -155595502 + (GAGAA)n Simple_repeat Simple_repeat 2 30 0 1988 139 10 10 chrX 7004428 7004608 -155595322 + AluSx SINE Alu 284 463 0 631 112 11 0 chrX 7004801 7004890 -155595040 - AluJb SINE Alu -15 297 208 581 292 46 25 chrX 7005515 7005755 -155594175 - MIR SINE MIR -14 248 4 1762 132 28 60 chrX 7006207 7006525 -155593405 - AluJb SINE Alu -4 308 1 267 54 0 0 chrX 7006708 7006745 -155593185 + (CA)n Simple_repeat Simple_repeat 2 38 0 274 336 17 26 chrX 7007184 7007300 -155592630 - MIR3 SINE MIR -6 202 88 2321 65 0 14 chrX 7007529 7007820 -155592110 - AluY SINE Alu -13 298 12 1927 140 6 32 chrX 7009049 7009364 -155590566 + AluSx SINE Alu 3 309 -3 1841 143 59 3 chrX 7009498 7009785 -155590145 - AluJb SINE Alu -9 303 1 965 168 0 0 chrX 7009925 7010080 -155589850 - FRAM SINE Alu -21 155 1 201 291 13 25 chrX 7010085 7010164 -155589766 - MIR SINE MIR -108 154 77 2798 210 29 0 chrX 7010186 7010730 -155589200 + MLT1F1 LTR MaLR 6 565 -2 283 405 8 0 chrX 7010936 7011067 -155588863 + L2 LINE L2 3141 3272 0 789 118 41 145 chrX 7011832 7012053 -155587877 + MER3 DNA MER1_type 5 202 -7 1543 180 8 8 chrX 7012431 7012698 -155587232 + AluJo SINE Alu 1 267 -45 791 126 0 53 chrX 7012728 7012918 -155587012 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 287 186 17 0 chrX 7013194 7013253 -155586677 + L1ME3A LINE L1 5509 5568 -594 677 260 64 20 chrX 7013265 7013515 -155586415 + L1ME3A LINE L1 5632 5892 -278 1813 169 0 42 chrX 7013696 7014003 -155585927 + AluJb SINE Alu 1 294 -18 1990 109 0 81 chrX 7014213 7014533 -155585397 - AluSx SINE Alu 0 312 19 2668 39 0 7 chrX 7014558 7014864 -155585066 - AluY SINE Alu -7 304 1 236 146 119 33 chrX 7014960 7015035 -155584895 - MLT1F1 LTR MaLR -29 538 453 2579 68 3 0 chrX 7015386 7015695 -155584235 - AluSp SINE Alu -3 310 1 320 0 0 24 chrX 7016502 7016543 -155583387 + (TC)n Simple_repeat Simple_repeat 2 41 0 359 285 74 20 chrX 7016761 7017044 -155582886 + Zaphod DNA AcHobo 388 4031 0 1169 112 0 12 chrX 7017514 7017683 -155582247 + AluJb SINE Alu 1 167 -145 208 262 0 119 chrX 7018181 7018265 -155581665 + L2 LINE L2 3240 3313 0 323 307 80 59 chrX 7018408 7018831 -155581099 - MLT1K LTR MaLR -8 580 149 536 263 34 22 chrX 7019153 7019332 -155580598 - MER58A DNA MER1_type -18 206 26 831 216 11 11 chrX 7019510 7019686 -155580244 + FRAM SINE Alu 1 176 0 3136 170 116 10 chrX 7019701 7020279 -155579651 + MER44D DNA MER2_type 1 639 -66 701 193 0 0 chrX 7020284 7020403 -155579527 + FLAM_C SINE Alu 3 121 -12 25 21 0 43 chrX 7020406 7020424 -155579506 + AT_rich Low_complexity Low_complexity 1 18 -27 2073 103 3 3 chrX 7020424 7020715 -155579215 - AluSx SINE Alu -21 291 1 25 21 0 43 chrX 7020715 7020743 -155579187 + AT_rich Low_complexity Low_complexity 18 45 0 619 187 0 19 chrX 7020743 7020850 -155579080 + MER44D DNA MER2_type 628 604 -1 2235 93 3 0 chrX 7021329 7021639 -155578291 + AluSx SINE Alu 1 311 -1 2115 93 3 3 chrX 7022163 7022452 -155577478 + AluSx SINE Alu 1 289 -23 1601 148 40 7 chrX 7022658 7022956 -155576974 - AluJb SINE Alu -4 308 1 2256 75 0 31 chrX 7023853 7024171 -155575759 - AluY SINE Alu -3 308 1 2139 92 0 0 chrX 7024173 7024455 -155575475 - AluSx SINE Alu -30 282 1 375 244 0 0 chrX 7024461 7024547 -155575383 + L1MC4a LINE L1 7472 7557 -251 302 160 0 0 chrX 7024768 7024818 -155575112 + MER58 DNA MER1_type 174 223 -118 2223 109 0 0 chrX 7025180 7025491 -155574439 - AluSx SINE Alu -1 311 1 180 0 0 0 chrX 7025493 7025513 -155574417 + (T)n Simple_repeat Simple_repeat 1 20 0 237 224 0 0 chrX 7025847 7025896 -155574034 + MLT1I LTR MaLR 85 133 -276 229 213 131 0 chrX 7026023 7026084 -155573846 + MLT1I LTR MaLR 341 409 0 1903 147 98 0 chrX 7026821 7027148 -155572782 + MLT1A1 LTR MaLR 3 361 -4 232 269 32 11 chrX 7027453 7027546 -155572384 + (CA)n Simple_repeat Simple_repeat 2 96 0 300 53 0 0 chrX 7027946 7027984 -155571946 + (TG)n Simple_repeat Simple_repeat 2 39 0 477 270 137 63 chrX 7028048 7028577 -155571353 + L1MC4 LINE L1 6959 7448 -594 1888 125 4 0 chrX 7028577 7028856 -155571074 + AluJb SINE Alu 4 283 -29 201 39 0 0 chrX 7028856 7028882 -155571048 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 477 270 137 63 chrX 7028882 7029044 -155570886 + L1MC4 LINE L1 7447 7702 -340 536 264 8 0 chrX 7029393 7029522 -155570408 - L1PB4 LINE L1 -76 6080 5951 221 274 88 10 chrX 7029853 7029955 -155569975 + MIR SINE MIR 153 262 0 820 158 0 0 chrX 7030605 7030725 -155569205 + FLAM_C SINE Alu 2 121 -22 1029 170 0 0 chrX 7030892 7031057 -155568873 - FRAM SINE Alu -1 165 1 650 251 138 0 chrX 7031449 7031644 -155568286 + MER58A DNA MER1_type 1 222 -2 * 908 204 63 12 chrX 7031643 7031898 -155568032 - MER33 DNA MER1_type 0 324 57 386 240 0 10 chrX 7032041 7032137 -155567793 - MER53 DNA DNA -72 117 23 2134 131 0 0 chrX 7032363 7032675 -155567255 + AluSx SINE Alu 1 312 0 1772 180 0 0 chrX 7032950 7033255 -155566675 + AluSx SINE Alu 1 305 -7 956 171 12 0 chrX 7034418 7034582 -155565348 + AluJb SINE Alu 136 301 -11 1922 144 0 0 chrX 7034631 7034929 -155565001 - AluSx SINE Alu -14 298 1 620 91 0 0 chrX 7035015 7035103 -155564827 + L1MB4 LINE L1 6093 6180 0 227 307 26 44 chrX 7035899 7036013 -155563917 - L2 LINE L2 -491 2823 2712 1706 196 37 64 chrX 7036023 7036478 -155563452 + MLT1C LTR MaLR 25 467 0 314 319 22 44 chrX 7036478 7036613 -155563317 - L2 LINE L2 -587 2727 2596 238 383 126 19 chrX 7036881 7037142 -155562788 - L2 LINE L2 -1919 1395 1107 404 245 56 47 chrX 7037251 7037433 -155562497 + L1ME3A LINE L1 5771 5957 -217 189 0 0 0 chrX 7037699 7037720 -155562210 + (TA)n Simple_repeat Simple_repeat 2 22 0 2201 88 13 0 chrX 7037733 7038038 -155561892 - AluSp SINE Alu -4 309 1 869 95 20 7 chrX 7038136 7038284 -155561646 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 473 304 164 68 chrX 7038287 7038745 -155561185 - MLT1K LTR MaLR -75 513 12 1906 29 4 12 chrX 7039128 7039368 -155560562 + AluY SINE Alu 73 310 -1 1578 189 105 6 chrX 7040394 7040728 -155559202 + MLT1B LTR MaLR 23 389 -1 224 261 14 14 chrX 7041926 7042064 -155557866 + CT-rich Low_complexity Low_complexity 4 141 0 * 374 219 13 32 chrX 7042035 7042360 -155557570 + C-rich Low_complexity Low_complexity 1 318 0 270 81 0 0 chrX 7042464 7042501 -155557429 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 29 28 0 0 chrX 7042590 7042626 -155557304 + GC_rich Low_complexity Low_complexity 1 36 0 376 296 17 34 chrX 7043381 7043560 -155556370 - L1ME4a LINE L1 -192 5929 5754 934 151 0 0 chrX 7043839 7043985 -155555945 + AluJb SINE Alu 167 312 0 2139 119 0 0 chrX 7044237 7044539 -155555391 - AluSx SINE Alu -10 302 1 1782 111 48 24 chrX 7044549 7044838 -155555092 - AluSc SINE Alu -13 296 1 2293 176 55 31 chrX 7045260 7045619 -155554311 + L1MB7 LINE L1 5647 6023 -161 1852 164 3 0 chrX 7045619 7045930 -155554000 - AluJb SINE Alu 0 312 1 2293 176 55 31 chrX 7045930 7046080 -155553850 + L1MB7 LINE L1 6023 6168 -16 728 186 0 8 chrX 7046128 7046257 -155553673 + AluJ SINE Alu 1 128 -174 2012 130 0 0 chrX 7046604 7046903 -155553027 + AluSx SINE Alu 2 300 -12 328 229 156 0 chrX 7046904 7047000 -155552930 + L1MCa LINE L1 1980 2090 -4336 509 256 29 70 chrX 7047126 7047368 -155552562 + MER112 DNA MER1_type 29 260 0 911 249 9 0 chrX 7047370 7047583 -155552347 + MER20 DNA MER1_type 1 215 -4 1939 124 3 16 chrX 7047615 7047922 -155552008 + AluSx SINE Alu 1 303 -9 1111 131 0 22 chrX 7047922 7048105 -155551825 + AluJ SINE Alu 134 312 0 498 325 0 0 chrX 7048462 7048613 -155551317 - MER5B DNA MER1_type -2 176 26 1184 140 48 34 chrX 7048909 7049116 -155550814 - MER20 DNA MER1_type -9 210 1 917 198 131 79 chrX 7049970 7050103 -155549827 - MER45C DNA AcHobo -630 951 826 907 205 0 0 chrX 7050103 7050264 -155549666 - FRAM SINE Alu -5 161 1 917 198 131 79 chrX 7050264 7050459 -155549471 - MER45C DNA AcHobo -755 826 606 613 226 161 6 chrX 7050440 7050608 -155549322 - MER45C DNA AcHobo -686 267 74 * 2417 69 3 0 chrX 7051376 7051681 -155548249 - AluSp SINE Alu -7 306 1 21 36 0 0 chrX 7052507 7052535 -155547395 + AT_rich Low_complexity Low_complexity 1 28 0 2297 99 0 3 chrX 7053373 7053686 -155546244 + AluSx SINE Alu 1 312 0 2089 112 0 0 chrX 7053806 7054110 -155545820 + AluSx SINE Alu 1 304 -8 2442 239 14 11 chrX 7054906 7055462 -155544468 - MER82 DNA MER2_type -93 560 3 351 294 162 15 chrX 7055713 7055849 -155544081 + MIR SINE MIR 40 195 -67 345 301 44 0 chrX 7056250 7056386 -155543544 + L1ME3A LINE L1 6002 6143 -27 186 133 0 0 chrX 7056655 7056685 -155543245 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2168 118 0 0 chrX 7057040 7057344 -155542586 + AluJb SINE Alu 1 304 -8 931 194 0 0 chrX 7058072 7058242 -155541688 + FRAM SINE Alu 1 169 -7 1116 172 0 0 chrX 7058244 7058424 -155541506 + MER46B DNA MER2_type 1 55 -181 1672 165 0 14 chrX 7058424 7058715 -155541215 + AluJo SINE Alu 1 287 -25 1220 134 23 14 chrX 7058728 7058944 -155540986 + MER46B DNA MER2_type 19 236 0 21 0 0 0 chrX 7059425 7059446 -155540484 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 7059749 7059790 -155540140 + (TG)n Simple_repeat Simple_repeat 2 42 0 1655 104 0 0 chrX 7059790 7060010 -155539920 - AluSg/x SINE Alu -27 285 66 955 148 0 37 chrX 7060010 7060172 -155539758 - MER20 DNA MER1_type -37 182 27 1658 147 0 64 chrX 7060316 7060628 -155539302 + AluJb SINE Alu 9 300 -12 2346 93 0 0 chrX 7061039 7061349 -155538581 + AluSx SINE Alu 1 310 -2 2037 143 93 25 chrX 7061406 7061805 -155538125 + MSTB LTR MaLR 1 426 0 1416 148 31 68 chrX 7061829 7062153 -155537777 + AluJo SINE Alu 1 312 0 599 336 63 41 chrX 7062442 7062955 -155536975 - L2 LINE L2 -2 3270 2748 2038 126 0 0 chrX 7062959 7063253 -155536677 - AluJo SINE Alu -18 294 1 239 264 56 42 chrX 7063273 7063345 -155536585 - MLT1D LTR MaLR -432 73 1 2237 97 0 0 chrX 7063694 7063992 -155535938 + AluSx SINE Alu 1 298 -14 1310 262 64 68 chrX 7064109 7064354 -155535576 - L1MC4 LINE L1 -143 7899 7654 2078 120 0 0 chrX 7064354 7064653 -155535277 - AluSx SINE Alu -13 299 1 1310 262 64 68 chrX 7064653 7064744 -155535186 - L1MC4 LINE L1 -388 7654 7564 1661 164 7 23 chrX 7064744 7065054 -155534876 + AluJo SINE Alu 1 305 -7 2558 173 19 8 chrX 7065056 7065536 -155534394 - L1MB3 LINE L1 -10 6173 5689 1310 262 64 68 chrX 7065536 7065855 -155534075 - L1MC4 LINE L1 -479 7563 7243 328 274 0 0 chrX 7066324 7066408 -155533522 + MER34 LTR ERV1 1 84 -458 2596 150 55 9 chrX 7066421 7066873 -155533057 + LTR29 LTR ERV1 137 609 -13 201 214 48 0 chrX 7066997 7067039 -155532891 + (TAGG)n Simple_repeat Simple_repeat 3 46 0 1585 149 7 18 chrX 7067174 7067455 -155532475 + AluJo SINE Alu 24 301 -11 380 350 36 0 chrX 7067458 7067598 -155532332 + L2 LINE L2 3164 3308 -5 2690 182 72 30 chrX 7067761 7068360 -155531570 + MLT1E3 LTR MaLR 1 624 0 1547 165 4 0 chrX 7068775 7069048 -155530882 + AluJo SINE Alu 38 311 -1 967 237 23 5 chrX 7069565 7069780 -155530150 + MER20 DNA MER1_type 1 219 0 2015 128 3 3 chrX 7071170 7071475 -155528455 - AluSx SINE Alu -7 305 1 214 257 69 109 chrX 7071502 7071603 -155528327 - L2 LINE L2 -16 3256 3160 822 167 0 7 chrX 7071678 7071822 -155528108 + FLAM_C SINE Alu 1 143 0 1806 148 7 13 chrX 7071825 7071960 -155527970 + AluSx SINE Alu 1 135 -177 2078 118 0 0 chrX 7071960 7072344 -155527586 + AluSx SINE Alu 1 312 0 1806 148 7 13 chrX 7072344 7072511 -155527419 + AluSx SINE Alu 135 301 -11 22 0 0 0 chrX 7072728 7072750 -155527180 + AT_rich Low_complexity Low_complexity 1 22 0 185 401 39 6 chrX 7072977 7073159 -155526771 - L2 LINE L2 -258 3014 2827 506 246 99 47 chrX 7073668 7073839 -155526091 + L1ME3 LINE L1 5969 6148 -14 193 393 0 0 chrX 7074011 7074067 -155525863 - L2 LINE L2 -219 3053 2998 1596 146 36 4 chrX 7074309 7074583 -155525347 - AluJb SINE Alu -29 283 1 187 321 58 29 chrX 7074598 7074735 -155525195 + MIR SINE MIR 74 214 -48 800 133 0 0 chrX 7075523 7075643 -155524287 + FLAM_C SINE Alu 1 120 -23 2799 109 26 9 chrX 7076173 7076594 -155523336 - MSTA LTR MaLR 0 428 1 6636 83 42 3 chrX 7076901 7077970 -155521960 - L1PA14 LINE L1 -1 6160 5079 1666 207 105 41 chrX 7077971 7078396 -155521534 - MLT1F LTR MaLR -27 515 54 1546 198 58 33 chrX 7078396 7078760 -155521170 - MLT1A2 LTR MaLR 0 374 2 1666 207 105 41 chrX 7078760 7078818 -155521112 - MLT1F LTR MaLR -488 54 1 349 313 54 27 chrX 7078886 7079048 -155520882 + MIR SINE MIR 1 170 -38 353 253 38 0 chrX 7079538 7079617 -155520313 + MIR SINE MIR 148 229 -33 921 203 18 53 chrX 7080366 7080593 -155519337 - MER20 DNA MER1_type 0 219 1 324 288 0 0 chrX 7080629 7080702 -155519228 - L2 LINE L2 -4 3268 3196 1360 160 23 105 chrX 7081114 7081458 -155518472 + AluYb8 SINE Alu 1 316 -2 411 233 338 0 chrX 7081616 7081749 -155518181 + MER5A DNA MER1_type 1 178 -11 2123 82 3 17 chrX 7081763 7082057 -155517873 + AluSc SINE Alu 6 295 -14 581 312 46 9 chrX 7083231 7083449 -155516481 - LTR67 LTR ERVL 0 557 332 1118 254 58 96 chrX 7083530 7083565 -155516365 + MLT1J LTR MaLR 20 55 -456 962 204 9 23 chrX 7083565 7083785 -155516145 + MER20 DNA MER1_type 1 217 -2 1118 254 58 96 chrX 7083785 7083957 -155515973 + MLT1J LTR MaLR 55 232 -279 1572 215 43 27 chrX 7083957 7084325 -155515605 - MLT1A2 LTR MaLR 0 374 1 1118 254 58 96 chrX 7084325 7084452 -155515478 + MLT1J LTR MaLR 232 362 -149 2492 35 0 6 chrX 7084452 7084764 -155515166 + AluY SINE Alu 1 310 -1 1118 254 58 96 chrX 7084764 7084926 -155515004 + MLT1J LTR MaLR 362 499 -12 1149 198 116 79 chrX 7085416 7085530 -155514400 + MER58B DNA MER1_type 1 109 -2311 1802 141 3 14 chrX 7085530 7085821 -155514109 - AluJb SINE Alu -24 288 1 1149 198 116 79 chrX 7085821 7086035 -155513895 + MER58B DNA MER1_type 109 341 0 249 197 13 145 chrX 7086198 7086274 -155513656 + MER45C DNA AcHobo 447 512 -441 286 293 13 0 chrX 7086280 7086355 -155513575 + MER45C DNA AcHobo 878 953 0 1704 219 28 0 chrX 7086571 7086927 -155513003 + LTR16C LTR ERVL 126 491 0 649 269 12 6 chrX 7088458 7088618 -155511312 + MLT1H LTR MaLR 386 546 -3 26 0 0 49 chrX 7088704 7088729 -155511201 + AT_rich Low_complexity Low_complexity 1 25 -14 2246 107 0 0 chrX 7088729 7089038 -155510892 + AluSx SINE Alu 1 309 -3 26 0 0 49 chrX 7089038 7089053 -155510877 + AT_rich Low_complexity Low_complexity 25 39 0 812 196 0 0 chrX 7089103 7089236 -155510694 + AluJb SINE Alu 2 134 -178 1997 248 72 19 chrX 7089238 7089887 -155510043 - L1ME2 LINE L1 -55 6109 5426 631 130 0 0 chrX 7090004 7090096 -155509834 - AluJ/FLAM SINE Alu -220 92 1 554 286 108 52 chrX 7090407 7090638 -155509292 - L2 LINE L2 0 3272 3029 1671 177 81 0 chrX 7090730 7091040 -155508890 + MER7A DNA MER2_type 14 346 0 3051 188 46 2 chrX 7091177 7091783 -155508147 + L1MB5 LINE L1 5541 6173 -1 1014 159 0 0 chrX 7091952 7092115 -155507815 + AluJb SINE Alu 138 300 -12 271 343 133 14 chrX 7092462 7092672 -155507258 - MIR SINE MIR -26 236 2 1557 147 9 69 chrX 7092761 7092903 -155507027 + AluJo SINE Alu 1 150 -162 2294 79 0 0 chrX 7092903 7093193 -155506737 + AluSx SINE Alu 1 290 -22 1557 147 9 69 chrX 7093193 7093369 -155506561 + AluJo SINE Alu 150 300 -12 1239 197 5 5 chrX 7093518 7093741 -155506189 - MER58A DNA MER1_type 0 224 2 1858 145 3 13 chrX 7093772 7094075 -155505855 - AluJo SINE Alu -6 306 7 1600 163 48 3 chrX 7094748 7095042 -155504888 - AluJb SINE Alu -5 307 1 1987 114 3 10 chrX 7095160 7095458 -155504472 - AluSq SINE Alu -17 296 1 2346 213 82 53 chrX 7095547 7095846 -155504084 - L1MD2 LINE L1 -2 6357 6068 2199 75 0 0 chrX 7095846 7096126 -155503804 + AluSx SINE Alu 27 306 -6 2346 213 82 53 chrX 7096126 7096543 -155503387 - L1MD2 LINE L1 -291 6068 5620 198 71 0 0 chrX 7096788 7096816 -155503114 + (GA)n Simple_repeat Simple_repeat 1 28 0 1784 113 6 73 chrX 7097156 7097484 -155502446 - AluJo SINE Alu -6 306 1 2346 35 3 0 chrX 7097669 7097976 -155501954 - AluY SINE Alu 0 308 1 2195 87 0 0 chrX 7098298 7098586 -155501344 + AluSg1 SINE Alu 1 288 -21 261 109 0 0 chrX 7098586 7098632 -155501298 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 2326 82 3 3 chrX 7098633 7098939 -155500991 + AluY SINE Alu 3 308 -3 231 191 0 0 chrX 7098943 7098985 -155500945 + L2 LINE L2 3268 3309 -4 224 329 161 7 chrX 7099058 7099195 -155500735 + MIR SINE MIR 3 160 -102 1173 181 191 61 chrX 7099202 7099610 -155500320 + MLT1C LTR MaLR 6 466 -1 814 313 23 32 chrX 7099791 7100136 -155499794 + MLT1L LTR MaLR 125 466 -149 279 270 0 0 chrX 7100243 7100306 -155499624 + MLT1K LTR MaLR 526 588 0 1992 115 0 0 chrX 7100407 7100686 -155499244 + AluSq SINE Alu 7 285 -28 1804 165 3 0 chrX 7100703 7101012 -155498918 + AluJo SINE Alu 1 310 -2 561 294 61 5 chrX 7101316 7101530 -155498400 + L1MC/D LINE L1 5543 5768 -2040 1709 141 3 50 chrX 7101670 7101798 -155498132 + 7SLRNA srpRNA srpRNA 20 152 -168 1996 125 0 0 chrX 7101798 7102095 -155497835 + AluSq SINE Alu 6 302 -11 360 0 0 0 chrX 7102096 7102136 -155497794 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1709 141 3 50 chrX 7102136 7102304 -155497626 + 7SLRNA srpRNA srpRNA 151 304 -16 24 0 0 0 chrX 7102304 7102328 -155497602 + AT_rich Low_complexity Low_complexity 1 24 0 338 247 0 0 chrX 7103771 7103848 -155496082 + 5S rRNA rRNA 7 83 -38 302 143 9 171 chrX 7104018 7104123 -155495807 + 5S rRNA rRNA 2 89 -32 321 160 0 0 chrX 7104949 7104999 -155494931 + 5S rRNA rRNA 2 51 -70 333 188 0 75 chrX 7105993 7106073 -155493857 + 5S rRNA rRNA 2 75 -46 321 160 0 0 chrX 7106925 7106975 -155492955 + 5S rRNA rRNA 2 51 -70 333 188 0 75 chrX 7107969 7108049 -155491881 + 5S rRNA rRNA 2 75 -46 300 180 0 0 chrX 7108901 7108951 -155490979 + 5S rRNA rRNA 2 51 -70 284 198 0 172 chrX 7109833 7109949 -155489981 + 5S rRNA rRNA 2 97 -24 333 188 0 75 chrX 7110876 7110956 -155488974 + 5S rRNA rRNA 2 75 -46 329 179 0 170 chrX 7111808 7111914 -155488016 + 5S rRNA rRNA 2 89 -32 333 188 0 75 chrX 7112852 7112932 -155486998 + 5S rRNA rRNA 2 75 -46 328 181 0 172 chrX 7113784 7113900 -155486030 + 5S rRNA rRNA 2 97 -24 260 228 0 76 chrX 7114830 7114909 -155485021 + 5S rRNA rRNA 3 75 -46 333 188 0 75 chrX 7115874 7115954 -155483976 + 5S rRNA rRNA 2 75 -46 768 154 0 15 chrX 7116577 7116707 -155483223 - AluJo SINE Alu -173 139 12 309 180 0 0 chrX 7117786 7117836 -155482094 + 5S rRNA rRNA 2 51 -70 330 181 0 172 chrX 7118718 7118834 -155481096 + 5S rRNA rRNA 2 97 -24 321 160 0 0 chrX 7119649 7119699 -155480231 + 5S rRNA rRNA 2 51 -70 533 42 14 0 chrX 7121445 7121517 -155478413 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 180 77 0 0 chrX 7121520 7121546 -155478384 + (GA)n Simple_repeat Simple_repeat 2 27 0 1632 173 15 0 chrX 7121548 7121819 -155478111 - AluJo SINE Alu -37 275 1 419 189 0 150 chrX 7122092 7122181 -155477749 - MER5B DNA MER1_type -41 137 71 2172 77 14 7 chrX 7122181 7122478 -155477452 - AluSq SINE Alu -14 299 1 419 189 0 150 chrX 7122478 7122515 -155477415 - MER5B DNA MER1_type -107 71 30 1246 161 169 0 chrX 7122679 7122940 -155476990 + AluSx SINE Alu 1 305 -7 643 209 209 0 chrX 7122944 7123097 -155476833 - MER5A DNA MER1_type -3 186 2 706 205 0 0 chrX 7123303 7123430 -155476500 + FRAM SINE Alu 4 130 -46 194 139 47 0 chrX 7123430 7123473 -155476457 + GA-rich Low_complexity Low_complexity 2 46 0 1383 226 174 22 chrX 7123956 7124455 -155475475 + MLT1E1 LTR MaLR 5 616 -38 22 0 0 0 chrX 7124456 7124478 -155475452 + AT_rich Low_complexity Low_complexity 1 22 0 1817 212 42 25 chrX 7124503 7124951 -155474979 - MLT2B1 LTR ERVL -64 456 1 2182 88 3 0 chrX 7125010 7125320 -155474610 - AluSp SINE Alu 0 311 1 1515 136 70 86 chrX 7125576 7125878 -155474052 - AluJb SINE Alu -15 297 1 352 276 9 19 chrX 7125880 7125985 -155473945 + MLT2B1 LTR ERVL 86 189 -331 431 197 0 0 chrX 7125993 7126069 -155473861 - AluS SINE Alu -235 78 3 1788 85 114 14 chrX 7126530 7126811 -155473119 + AluSg SINE Alu 2 310 0 725 231 27 43 chrX 7126851 7126916 -155473014 + MER5A DNA MER1_type 7 72 -117 2181 83 17 3 chrX 7126916 7127217 -155472713 + AluSx SINE Alu 1 305 -7 725 231 27 43 chrX 7127217 7127337 -155472593 + MER5A DNA MER1_type 72 189 0 275 335 97 0 chrX 7127528 7127683 -155472247 - MIR SINE MIR -13 249 80 368 206 65 0 chrX 7127705 7127797 -155472133 - MLT2B1 LTR ERVL -422 98 1 315 130 0 0 chrX 7128103 7128149 -155471781 - Alu SINE Alu -10 292 247 1169 249 134 22 chrX 7129072 7129084 -155470846 - MLT1E LTR MaLR 0 624 615 2240 159 10 8 chrX 7129084 7129473 -155470457 - MLT1B LTR MaLR 0 390 1 1169 249 134 22 chrX 7129473 7129685 -155470245 - MLT1E LTR MaLR -9 615 428 1623 185 0 30 chrX 7129685 7129987 -155469943 + AluJb SINE Alu 1 293 -19 1169 249 134 22 chrX 7129987 7130170 -155469760 - MLT1E LTR MaLR -196 428 267 2214 89 6 13 chrX 7130170 7130483 -155469447 + AluSx SINE Alu 1 311 -1 1169 249 134 22 chrX 7130483 7130556 -155469374 - MLT1E LTR MaLR -357 267 20 969 106 0 0 chrX 7131655 7131787 -155468143 + AluSg/x SINE Alu 154 285 -25 1934 161 17 17 chrX 7132599 7132953 -155466977 - L1MB5 LINE L1 0 6174 5821 24 32 0 0 chrX 7132953 7132984 -155466946 + AT_rich Low_complexity Low_complexity 1 31 0 209 180 120 0 chrX 7132991 7133041 -155466889 - L2 LINE L2 -1 3312 3257 2003 72 3 28 chrX 7134115 7134247 -155465683 + AluY SINE Alu 1 135 -172 198 0 0 0 chrX 7134247 7134269 -155465661 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2003 72 3 28 chrX 7134269 7134450 -155465480 + AluY SINE Alu 135 307 0 1693 144 11 0 chrX 7134525 7134839 -155465091 - AluJb SINE Alu 0 317 1 2250 76 0 7 chrX 7135764 7136068 -155463862 + AluSc SINE Alu 1 302 -7 509 120 0 0 chrX 7136884 7136959 -155462971 + U3 snRNA snRNA 13 87 -130 2178 90 3 0 chrX 7137441 7137729 -155462201 + AluSq SINE Alu 1 289 -24 319 254 15 142 chrX 7138008 7138213 -155461717 - MIR SINE MIR -54 208 30 859 206 110 77 chrX 7138509 7138833 -155461097 - MLT2C1 LTR ERVL -3 394 60 1842 219 13 44 chrX 7138833 7139307 -155460623 + MLT1C LTR MaLR 1 459 -8 245 234 31 16 chrX 7139313 7139377 -155460553 - MLT2C1 LTR ERVL -331 66 2 476 157 29 0 chrX 7139380 7139482 -155460448 + CT-rich Low_complexity Low_complexity 5 109 0 1712 166 3 3 chrX 7139555 7139856 -155460074 + AluJb SINE Alu 1 301 -11 1538 160 23 20 chrX 7140126 7140426 -155459504 - AluJo SINE Alu -11 301 1 1386 244 90 5 chrX 7140564 7140966 -155458964 - L1MD3 LINE L1 0 7995 7560 27 0 0 0 chrX 7142120 7142147 -155457783 + AT_rich Low_complexity Low_complexity 1 27 0 358 307 48 96 chrX 7142731 7143134 -155456796 - L1MEc LINE L1 -2792 3423 2118 309 155 14 113 chrX 7145081 7145152 -155454778 + MER20 DNA MER1_type 2 65 -154 268 264 75 19 chrX 7145385 7145491 -155454439 + MIR3 SINE MIR 43 154 -54 183 100 0 0 chrX 7145492 7145522 -155454408 + (TA)n Simple_repeat Simple_repeat 1 30 0 1201 169 4 30 chrX 7145636 7145867 -155454063 - AluJo SINE Alu -76 236 12 2014 103 27 0 chrX 7145920 7146221 -155453709 - AluSx SINE Alu -3 309 1 373 257 68 68 chrX 7146368 7146574 -155453356 - L1ME1 LINE L1 -4 6162 5957 1088 81 37 6 chrX 7146868 7147029 -155452901 - L1MA2 LINE L1 -4 6300 6135 1710 111 71 7 chrX 7147033 7147313 -155452617 - AluSx SINE Alu -14 298 1 2036 126 3 0 chrX 7147391 7147692 -155452238 - AluSq SINE Alu -11 302 1 1285 169 61 102 chrX 7149037 7149350 -155450580 - AluJo SINE Alu -2 300 1 2177 86 17 0 chrX 7149395 7149685 -155450245 + AluY SINE Alu 1 295 -16 23 0 0 0 chrX 7150965 7150988 -155448942 + AT_rich Low_complexity Low_complexity 1 23 0 2170 100 0 0 chrX 7151632 7151932 -155447998 - AluSx SINE Alu -12 300 1 1897 100 40 27 chrX 7151977 7152304 -155447626 - AluSx SINE Alu 0 312 1 814 247 28 13 chrX 7154412 7154664 -155445266 - L1MA10 LINE L1 0 6334 5926 284 114 0 65 chrX 7154818 7154864 -155445066 + MIR SINE MIR 115 158 -50 1727 147 102 30 chrX 7155166 7155527 -155444403 + LTR8A LTR ERV1 1 387 -340 7011 102 58 36 chrX 7155529 7155935 -155443995 + HUERS-P1 LTR ERV1 1919 2315 -2565 2054 85 41 0 chrX 7155935 7156225 -155443705 + AluSg SINE Alu 1 301 0 7011 102 58 36 chrX 7156225 7156697 -155443233 + HUERS-P1 LTR ERV1 2315 2775 -2105 243 0 0 0 chrX 7156697 7156724 -155443206 + (TG)n Simple_repeat Simple_repeat 2 28 0 2128 84 3 14 chrX 7156724 7157011 -155442919 - AluSp SINE Alu -28 285 2 7011 102 58 36 chrX 7157011 7157264 -155442666 + HUERS-P1 LTR ERV1 2774 3078 -1802 * 7611 150 59 49 chrX 7157263 7158988 -155440942 + HUERS-P1 LTR ERV1 3805 5790 -529 765 169 77 64 chrX 7158997 7159273 -155440657 + HUERS-P1 LTR ERV1 5914 6226 -105 691 243 24 18 chrX 7159351 7159520 -155440410 + HUERS-P1 LTR ERV1 6090 6259 -4 615 104 26 70 chrX 7159523 7159638 -155440292 + LTR8A LTR ERV1 1 110 -617 619 183 35 9 chrX 7159648 7159763 -155440167 + LTR8A LTR ERV1 610 727 0 567 222 58 48 chrX 7159763 7159935 -155439995 + MER20 DNA MER1_type 46 219 0 1323 238 49 46 chrX 7160705 7160776 -155439154 - L1ME1 LINE L1 -2 6160 6091 1575 121 111 35 chrX 7160776 7161065 -155438865 - AluJo SINE Alu -1 311 1 1323 238 49 46 chrX 7161065 7161493 -155438437 - L1ME1 LINE L1 -71 6091 5681 623 179 4 197 chrX 7161496 7161560 -155438370 - MER5A DNA MER1_type 0 189 114 1499 167 10 38 chrX 7161560 7161853 -155438077 + AluJo SINE Alu 3 287 -25 623 179 4 197 chrX 7161853 7162022 -155437908 - MER5A DNA MER1_type -75 114 1 26 0 0 0 chrX 7162657 7162683 -155437247 + AT_rich Low_complexity Low_complexity 1 26 0 2945 133 23 40 chrX 7162709 7162998 -155436932 + MER4B LTR ERV1 31 323 -456 1650 187 20 0 chrX 7162998 7163292 -155436638 - AluJb SINE Alu -12 300 1 2945 133 23 40 chrX 7163292 7163591 -155436339 + MER4B LTR ERV1 323 779 0 1549 188 63 12 chrX 7163892 7164227 -155435703 - L1MB7 LINE L1 0 6184 5833 2330 190 36 20 chrX 7164934 7165429 -155434501 - MLT1D LTR MaLR -2 503 1 201 156 0 0 chrX 7165596 7165628 -155434302 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 751 138 17 0 chrX 7165628 7165744 -155434186 - FLAM_C SINE Alu -15 118 1 310 118 224 0 chrX 7166184 7166269 -155433661 - MLT1I LTR MaLR -25 384 281 263 270 52 26 chrX 7166433 7166548 -155433382 - MLT1I LTR MaLR -375 174 57 1560 180 10 16 chrX 7166723 7167029 -155432901 - AluJo SINE Alu -8 304 1 948 172 37 42 chrX 7167077 7167292 -155432638 + MER20 DNA MER1_type 6 219 0 214 229 0 21 chrX 7167296 7167344 -155432586 + MER5A DNA MER1_type 140 186 -3 1801 149 0 13 chrX 7167734 7168036 -155431894 - AluJo SINE Alu -9 303 6 318 26 0 0 chrX 7168059 7168098 -155431832 + (TA)n Simple_repeat Simple_repeat 2 40 0 1120 144 0 0 chrX 7168098 7168265 -155431665 - AluJb SINE Alu -11 301 135 540 0 0 0 chrX 7169597 7169657 -155430273 + (TG)n Simple_repeat Simple_repeat 2 61 0 1515 168 7 34 chrX 7170238 7170558 -155429372 + AluJb SINE Alu 1 312 0 34 24 0 0 chrX 7171330 7171371 -155428559 + AT_rich Low_complexity Low_complexity 1 41 0 2250 226 127 3 chrX 7172215 7172796 -155427134 + MER82 DNA MER2_type 1 653 0 268 295 26 0 chrX 7173273 7173351 -155426579 - MER116 DNA Mariner 0 80 1 1943 148 0 0 chrX 7173885 7174190 -155425740 + AluJb SINE Alu 1 305 -7 346 148 0 0 chrX 7174443 7174497 -155425433 + AluJ/FLAM SINE Alu 39 92 -210 676 188 0 19 chrX 7174499 7174659 -155425271 + CT-rich Low_complexity Low_complexity 2 158 0 792 144 0 30 chrX 7174662 7174794 -155425136 - FLAM_C SINE Alu -5 128 1 2217 100 0 7 chrX 7176452 7176753 -155423177 + AluSq SINE Alu 1 299 -14 1878 144 26 7 chrX 7176761 7177067 -155422863 + AluJo SINE Alu 1 312 0 2189 101 0 3 chrX 7177073 7177371 -155422559 + AluSq SINE Alu 3 299 -14 953 223 14 18 chrX 7177569 7177789 -155422141 + MER20 DNA MER1_type 1 219 0 345 231 66 11 chrX 7177905 7177996 -155421934 + MIR SINE MIR 6 101 -161 1195 194 26 15 chrX 7178750 7179023 -155420907 + MER33 DNA MER1_type 2 277 -47 231 288 15 15 chrX 7179315 7179381 -155420549 - MIR SINE MIR -179 83 18 183 220 0 60 chrX 7179422 7179472 -155420458 + L2 LINE L2 3198 3244 -69 229 184 0 0 chrX 7179516 7179554 -155420376 + MSTD LTR MaLR 219 256 -140 * 378 243 29 29 chrX 7179549 7179755 -155420175 + MLT1A2 LTR MaLR 166 363 -65 23059 129 68 24 chrX 7179768 7185837 -155414093 + L1PA8A LINE L1 1 6425 -21 2044 57 89 14 chrX 7185864 7186144 -155413786 + AluY SINE Alu 1 301 -10 1962 142 0 3 chrX 7186241 7186544 -155413386 - AluJb SINE Alu -10 302 1 919 160 71 6 chrX 7186845 7187014 -155412916 + MER20 DNA MER1_type 40 219 0 656 181 0 97 chrX 7187292 7187338 -155412592 + MER58B DNA MER1_type 187 236 -2184 1995 138 44 99 chrX 7187338 7187774 -155412156 + MLT2D LTR ERVL 1 412 -2 656 181 0 97 chrX 7187774 7187882 -155412048 + MER58B DNA MER1_type 236 326 -15 1723 148 14 0 chrX 7188623 7188907 -155411023 - AluJb SINE Alu -14 298 11 231 129 0 0 chrX 7188909 7188940 -155410990 - AluJb SINE Alu -271 31 1 2082 87 33 3 chrX 7189257 7189557 -155410373 - AluSx SINE Alu -3 309 1 375 299 84 13 chrX 7190157 7190311 -155409619 + MIR SINE MIR 90 254 -8 1011 178 29 34 chrX 7190362 7190481 -155409449 + MER20 DNA MER1_type 2 121 -98 2052 157 99 20 chrX 7190481 7190876 -155409054 - MSTB LTR MaLR 0 426 1 1011 178 29 34 chrX 7190876 7190964 -155408966 + MER20 DNA MER1_type 121 208 -11 364 246 48 97 chrX 7191330 7191558 -155408372 - L1MD2 LINE L1 0 6359 6143 789 180 101 37 chrX 7192566 7192783 -155407147 + L1MB8 LINE L1 5948 6178 0 1742 128 42 23 chrX 7194581 7194887 -155405043 + AluJo SINE Alu 1 312 0 629 248 13 7 chrX 7194925 7195074 -155404856 + MER58B DNA MER1_type 174 323 -18 825 229 5 11 chrX 7195996 7196184 -155403746 - AluJo SINE Alu -5 307 121 1698 175 0 19 chrX 7197568 7197876 -155402054 + AluJo SINE Alu 1 302 -10 897 230 4 57 chrX 7198293 7198541 -155401389 + MER8 DNA MER2_type 1 235 -4 463 168 21 11 chrX 7198657 7198752 -155401178 + MER3 DNA MER1_type 65 160 -49 1852 149 3 7 chrX 7198768 7199077 -155400853 - AluJo SINE Alu -4 308 1 225 313 45 0 chrX 7200179 7200291 -155399639 + (CACGT)n Simple_repeat Simple_repeat 4 120 0 321 237 154 39 chrX 7200502 7200658 -155399272 - Charlie4 DNA MER1_type -5 1956 1783 2290 190 45 28 chrX 7200669 7200719 -155399211 - L1MB2 LINE L1 0 6171 6123 2421 81 0 0 chrX 7200719 7201026 -155398904 - AluSx SINE Alu -5 307 1 2290 190 45 28 chrX 7201026 7201485 -155398445 - L1MB2 LINE L1 -48 6123 5653 1584 145 0 0 chrX 7201504 7201752 -155398178 - AluJo SINE Alu -6 306 59 247 219 86 29 chrX 7201761 7201866 -155398064 - L2 LINE L2 -649 2665 2555 210 118 0 0 chrX 7202852 7202886 -155397044 + (TG)n Simple_repeat Simple_repeat 1 34 0 188 109 55 18 chrX 7202886 7202941 -155396989 + GA-rich Low_complexity Low_complexity 2 58 0 791 192 50 50 chrX 7203335 7203533 -155396397 - MER58B DNA MER1_type -4 337 140 245 238 48 24 chrX 7204249 7204333 -155395597 - L1M1 LINE L1 -7463 102 17 458 242 224 19 chrX 7204354 7204515 -155395415 - MER58B DNA MER1_type -1 340 147 1436 155 0 45 chrX 7204515 7204559 -155395371 - L1MB3 LINE L1 -87 6096 6052 1398 158 88 32 chrX 7204559 7204843 -155395087 - AluJo SINE Alu -2 300 1 1436 155 0 45 chrX 7204843 7205099 -155394831 - L1MB3 LINE L1 -131 6052 5817 605 256 0 19 chrX 7205916 7206076 -155393854 + MER58A DNA MER1_type 40 196 -28 1580 170 37 13 chrX 7206419 7206719 -155393211 + AluJo SINE Alu 1 307 -5 251 93 23 0 chrX 7207974 7208017 -155391913 + (GGGAGA)n Simple_repeat Simple_repeat 6 49 0 456 35 0 0 chrX 7208113 7208171 -155391759 + (TG)n Simple_repeat Simple_repeat 2 59 0 799 85 0 0 chrX 7208382 7208488 -155391442 + FLAM_C SINE Alu 2 107 -36 1996 122 0 10 chrX 7208493 7208788 -155391142 - AluSx SINE Alu -14 298 7 1720 181 50 11 chrX 7209314 7209673 -155390257 - MLT1B LTR MaLR -4 386 14 1301 161 51 0 chrX 7209679 7209915 -155390015 + L1MB7 LINE L1 5929 6176 -8 302 139 76 38 chrX 7211240 7211319 -155388611 - L1MB8 LINE L1 0 6178 6097 733 230 83 5 chrX 7211516 7211733 -155388197 - L1MB1 LINE L1 -24 6144 5911 191 221 78 52 chrX 7211734 7211811 -155388119 + MIR SINE MIR 184 262 0 2119 102 0 3 chrX 7213014 7213308 -155386622 - AluSc SINE Alu -16 293 1 2518 147 60 4 chrX 7214067 7214537 -155385393 - L1MB3 LINE L1 0 6183 5688 347 200 0 0 chrX 7214537 7214602 -155385328 + MER3 DNA MER1_type 140 204 -5 300 325 86 0 chrX 7216059 7216210 -155383720 + MIR SINE MIR 78 241 -21 334 309 58 80 chrX 7216252 7216527 -155383403 + L2 LINE L2 2970 3238 -34 243 88 0 0 chrX 7218682 7218716 -155381214 + (T)n Simple_repeat Simple_repeat 1 34 0 277 224 0 0 chrX 7218961 7219019 -155380911 - MER69 DNA AcHobo -1960 566 509 200 256 0 0 chrX 7220207 7220246 -155379684 + C-rich Low_complexity Low_complexity 1 39 0 2100 114 0 10 chrX 7221317 7221624 -155378306 - AluSp SINE Alu -9 304 1 1637 103 0 0 chrX 7221759 7221983 -155377947 - AluSg/x SINE Alu -6 306 83 1700 163 13 23 chrX 7222018 7222319 -155377611 + AluJo SINE Alu 1 298 -14 423 281 253 18 chrX 7222575 7222970 -155376960 - L1MC4 LINE L1 -363 7679 7192 2197 87 0 3 chrX 7222997 7223296 -155376634 + AluY SINE Alu 8 305 -6 423 228 105 35 chrX 7223305 7223419 -155376511 + MER58B DNA MER1_type 191 312 -29 952 258 122 103 chrX 7223450 7223565 -155376365 - L1MC4a LINE L1 -714 7094 6983 2763 13 0 0 chrX 7223565 7223876 -155376054 - AluY SINE Alu 0 311 1 952 258 122 103 chrX 7223876 7224072 -155375858 - L1MC4a LINE L1 -825 6983 6792 2127 128 0 0 chrX 7224072 7224378 -155375552 - AluSx SINE Alu -6 306 1 952 258 122 103 chrX 7224378 7225168 -155374762 - L1MC4a LINE L1 -1016 6792 5971 584 243 89 22 chrX 7226027 7226337 -155373593 + MER58 DNA MER1_type 4 2418 -2 228 226 28 94 chrX 7226416 7226522 -155373408 + MER41D LTR ERV1 373 471 -86 1129 183 5 23 chrX 7227561 7227780 -155372150 + MER20 DNA MER1_type 1 215 -4 215 220 40 0 chrX 7227830 7227880 -155372050 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 1363 236 133 33 chrX 7229503 7229618 -155370312 + MLT1D LTR MaLR 1 103 -402 1777 164 0 3 chrX 7229618 7229923 -155370007 + AluJo SINE Alu 1 304 -8 1363 236 133 33 chrX 7229923 7230260 -155369670 + MLT1D LTR MaLR 103 498 -7 1323 179 0 4 chrX 7230710 7230939 -155368991 - AluJb SINE Alu -84 228 1 21 0 0 0 chrX 7230941 7230962 -155368968 + AT_rich Low_complexity Low_complexity 1 21 0 3407 177 38 7 chrX 7231485 7231827 -155368103 - L1MB7 LINE L1 0 6184 5854 1629 181 7 16 chrX 7231827 7232137 -155367793 - AluJo SINE Alu -5 307 1 3407 177 38 7 chrX 7232137 7232477 -155367453 - L1MB7 LINE L1 -330 5854 5481 1766 157 7 4 chrX 7232664 7232944 -155366986 + AluJo SINE Alu 1 281 -31 206 81 27 0 chrX 7232949 7232986 -155366944 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 772 195 5 70 chrX 7233049 7233134 -155366796 - MLT1D LTR MaLR 0 505 416 1471 168 47 20 chrX 7233134 7233432 -155366498 + AluJo SINE Alu 1 306 -6 772 195 5 70 chrX 7233432 7233546 -155366384 - MLT1D LTR MaLR -89 416 319 227 31 31 0 chrX 7233555 7233587 -155366343 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 513 251 125 88 chrX 7233587 7233906 -155366024 - MLT1D LTR MaLR -294 332 2 2116 117 3 0 chrX 7234994 7235301 -155364629 + AluSq SINE Alu 1 308 -5 265 359 68 13 chrX 7236931 7237165 -155362765 - MIR SINE MIR -9 253 7 477 226 0 20 chrX 7237704 7237806 -155362124 - MER20 DNA MER1_type -114 105 6 916 180 115 6 chrX 7240330 7240513 -155359417 - MER3 DNA MER1_type -1 208 6 506 261 86 37 chrX 7240650 7240895 -155359035 + HAL1 LINE L1 1383 1639 -868 989 94 0 0 chrX 7240896 7241024 -155358906 + AluSq/x SINE Alu 1 128 -184 536 293 72 71 chrX 7241026 7241210 -155358720 + HAL1 LINE L1 1670 1852 -655 2250 84 0 3 chrX 7241210 7241507 -155358423 + AluSc SINE Alu 1 296 -13 536 293 72 71 chrX 7241507 7241747 -155358183 + HAL1 LINE L1 1852 2090 -417 2525 39 0 7 chrX 7241747 7242052 -155357878 + AluY SINE Alu 1 303 -8 536 293 72 71 chrX 7242052 7242303 -155357627 + HAL1 LINE L1 2090 2347 -160 1725 167 6 6 chrX 7242305 7242617 -155357313 + AluJb SINE Alu 1 312 0 1048 192 33 14 chrX 7242875 7243089 -155356841 - MER20 DNA MER1_type 0 219 2 298 324 148 0 chrX 7243612 7243754 -155356176 - MIR3 SINE MIR -5 203 41 184 289 0 0 chrX 7244705 7244757 -155355173 + MIR SINE MIR 100 151 -57 195 131 65 19 chrX 7245007 7245114 -155354816 + (TG)n Simple_repeat Simple_repeat 1 112 0 347 147 35 56 chrX 7245162 7245516 -155354414 + (TG)n Simple_repeat Simple_repeat 1 346 0 258 157 37 46 chrX 7245532 7245640 -155354290 + (TG)n Simple_repeat Simple_repeat 1 107 0 233 180 56 73 chrX 7245568 7245746 -155354184 + (CTGTG)n Simple_repeat Simple_repeat 5 179 0 * 336 109 23 63 chrX 7245747 7245921 -155354009 + (TG)n Simple_repeat Simple_repeat 1 167 0 491 82 38 60 chrX 7246001 7246184 -155353746 + (TG)n Simple_repeat Simple_repeat 2 180 0 806 149 113 0 chrX 7246294 7246435 -155353495 + FRAM SINE Alu 1 157 -9 2463 64 0 0 chrX 7247424 7247735 -155352195 - AluY SINE Alu 0 311 1 1163 197 10 0 chrX 7247790 7247998 -155351932 - MLT1B LTR MaLR 0 390 181 2667 150 2 9 chrX 7248316 7248769 -155351161 - L1MB3 LINE L1 -3 6180 5731 235 97 0 0 chrX 7249577 7249608 -155350322 - MLT1B LTR MaLR -2 388 358 1472 145 76 46 chrX 7250940 7251243 -155348687 + AluJo SINE Alu 1 312 0 1752 203 138 7 chrX 7251614 7251738 -155348192 - L1MB7 LINE L1 -12 6172 6066 1922 123 63 36 chrX 7251738 7252103 -155347827 - THE1C LTR MaLR 0 375 1 1752 203 138 7 chrX 7252103 7252426 -155347504 - L1MB7 LINE L1 -118 6066 5666 189 0 0 0 chrX 7253454 7253475 -155346455 + (A)n Simple_repeat Simple_repeat 1 21 0 1928 148 0 3 chrX 7253478 7253782 -155346148 + AluJb SINE Alu 4 306 -6 420 156 0 26 chrX 7253978 7254055 -155345875 + Charlie5 DNA MER1_type 29 103 -2509 820 177 96 53 chrX 7254228 7254437 -155345493 + MER20 DNA MER1_type 2 219 0 741 180 0 0 chrX 7254995 7255123 -155344807 - FRAM SINE Alu -13 163 36 1232 77 0 0 chrX 7256748 7256904 -155343026 - MER4E LTR ERV1 0 766 611 1958 129 9 22 chrX 7256923 7257264 -155342666 - MER4A LTR ERV1 0 664 270 646 122 10 10 chrX 7257273 7257371 -155342559 - MER4A LTR ERV1 -566 98 1 2352 132 64 58 chrX 7257371 7257840 -155342090 - MER4B LTR ERV1 -138 472 1 743 142 112 18 chrX 7258250 7258419 -155341511 + MER20 DNA MER1_type 33 217 -2 476 314 39 18 chrX 7259552 7259781 -155340149 - L1MC5 LINE L1 -36 7925 7692 723 197 165 101 chrX 7259792 7260185 -155339745 - MLT1C LTR MaLR 0 467 33 221 288 128 24 chrX 7260398 7260523 -155339407 + MIR SINE MIR 114 251 -11 561 312 115 23 chrX 7260625 7261061 -155338869 + L1MB5 LINE L1 5264 5739 -2069 881 159 123 29 chrX 7261451 7261580 -155338350 + L1MB5 LINE L1 5803 5919 -255 881 186 10 31 chrX 7261580 7261773 -155338157 + L1MB5 LINE L1 5986 6174 0 220 271 146 10 chrX 7261811 7261907 -155338023 - MER5C DNA MER1_type -4 320 212 309 286 238 0 chrX 7262113 7262218 -155337712 + MER5A DNA MER1_type 53 182 -7 1061 248 148 9 chrX 7262316 7262655 -155337275 - MLT1B LTR MaLR -4 386 1 202 204 0 0 chrX 7262656 7262700 -155337230 + MIR SINE MIR 101 144 -118 3516 171 30 24 chrX 7262706 7263377 -155336553 + L1MB2 LINE L1 5454 6128 -43 1723 156 7 3 chrX 7263389 7263678 -155336252 + AluJo SINE Alu 13 302 -10 354 261 0 0 chrX 7264289 7264377 -155335553 - MER96B DNA MER1_type? -5 412 325 1559 232 35 26 chrX 7264386 7264770 -155335160 - L1MB8 LINE L1 -2 6176 5786 1187 217 102 6 chrX 7264770 7265084 -155334846 - MER2 DNA MER2_type 0 344 1 1559 232 35 26 chrX 7265084 7265152 -155334778 - L1MB8 LINE L1 -392 5786 5720 1312 175 64 46 chrX 7265154 7265366 -155334564 + MER96B DNA MER1_type? 86 308 -109 2222 85 17 0 chrX 7265366 7265661 -155334269 - AluSx SINE Alu -12 300 1 1312 175 64 46 chrX 7265661 7265774 -155334156 + MER96B DNA MER1_type? 308 417 0 762 223 22 33 chrX 7265955 7266139 -155333791 - MLT1C LTR MaLR 0 467 286 1606 210 108 25 chrX 7266549 7267128 -155332802 + L1MD3 LINE L1 7267 7990 -5 21 36 0 0 chrX 7268214 7268242 -155331688 + AT_rich Low_complexity Low_complexity 1 28 0 1494 191 69 29 chrX 7269220 7269597 -155330333 - L1MB4 LINE L1 0 6180 5789 2320 82 0 0 chrX 7269878 7270160 -155329770 + AluSq SINE Alu 1 282 -31 211 37 0 0 chrX 7270160 7270187 -155329743 + (TAA)n Simple_repeat Simple_repeat 1 180 0 828 130 32 87 chrX 7273159 7273344 -155326586 + MER20 DNA MER1_type 4 178 -41 491 206 56 0 chrX 7273346 7273453 -155326477 - MER20 DNA MER1_type -106 113 1 1013 192 189 80 chrX 7274688 7275037 -155324893 + MLT1B LTR MaLR 1 387 -3 1888 190 69 35 chrX 7275384 7275668 -155324262 - MLT1C LTR MaLR 0 467 194 323 39 59 0 chrX 7275668 7275719 -155324211 + T-rich Low_complexity Low_complexity 2 55 0 2307 82 0 0 chrX 7275721 7276002 -155323928 - AluSx SINE Alu -31 281 1 1888 190 69 35 chrX 7276002 7276166 -155323764 - MLT1C LTR MaLR -273 194 1 2059 161 19 33 chrX 7276894 7277261 -155322669 - MLT1A1 LTR MaLR -1 364 3 1997 118 34 10 chrX 7278527 7278823 -155321107 + AluSx SINE Alu 1 303 -9 180 111 0 0 chrX 7279099 7279126 -155320804 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1423 213 113 19 chrX 7280436 7280859 -155319071 - MLT1C LTR MaLR -4 463 1 948 181 80 38 chrX 7282673 7282911 -155317019 - MLT1F1 LTR MaLR 0 567 320 1259 164 5 5 chrX 7283240 7283460 -155316470 + AluJo SINE Alu 86 305 -7 228 281 101 11 chrX 7283859 7283948 -155315982 - L2 LINE L2 0 3272 3176 195 343 20 20 chrX 7284053 7284155 -155315775 - MIR3 SINE MIR -3 205 104 1431 150 85 68 chrX 7284533 7284569 -155315361 - AluJo SINE Alu 0 312 278 180 0 0 0 chrX 7284569 7284589 -155315341 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1431 150 85 68 chrX 7284589 7284859 -155315071 - AluJo SINE Alu -34 278 1 1013 236 100 14 chrX 7284860 7285140 -155314790 - L1MD3 LINE L1 -369 7626 7323 342 0 0 0 chrX 7286095 7286133 -155313797 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chrX 7286170 7286192 -155313738 + (TG)n Simple_repeat Simple_repeat 2 23 0 276 232 0 14 chrX 7286563 7286632 -155313298 - L1M LINE L1 -700 5421 5354 364 228 51 57 chrX 7289127 7289285 -155310645 - Charlie5 DNA MER1_type -29 2583 2427 571 191 0 37 chrX 7289291 7289427 -155310503 - Charlie5 DNA MER1_type -91 2521 2391 797 108 0 0 chrX 7289490 7289601 -155310329 + L1MA1 LINE L1 6188 6298 -4 25 0 0 0 chrX 7290146 7290171 -155309759 + AT_rich Low_complexity Low_complexity 1 25 0 954 201 113 25 chrX 7290193 7290462 -155309468 + Charlie5 DNA MER1_type 2269 2572 -52 2536 77 0 0 chrX 7290462 7290773 -155309157 + AluSx SINE Alu 1 311 -1 954 201 113 25 chrX 7290773 7290822 -155309108 + Charlie5 DNA MER1_type 2572 2615 -9 1812 174 24 0 chrX 7291044 7291338 -155308592 + AluJo SINE Alu 1 301 -11 280 275 42 28 chrX 7291412 7291554 -155308376 - MIR SINE MIR -78 184 41 217 236 194 14 chrX 7292729 7292801 -155307129 - L2 LINE L2 -11 3302 3218 757 181 46 69 chrX 7294646 7294862 -155305068 - MER20 DNA MER1_type -8 211 1 2426 71 7 10 chrX 7295152 7295460 -155304470 + AluSx SINE Alu 1 307 -5 237 292 164 33 chrX 7297151 7297480 -155302450 - L2 LINE L2 -91 3222 2851 2346 173 121 22 chrX 7298924 7299214 -155300716 - L1MB3 LINE L1 -3 6180 5920 2180 124 0 7 chrX 7299214 7299389 -155300541 - AluSx SINE Alu -12 300 126 271 44 44 0 chrX 7299389 7299434 -155300496 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 2180 124 0 7 chrX 7299434 7299557 -155300373 - AluSx SINE Alu -186 126 4 2346 173 121 22 chrX 7299557 7299822 -155300108 - L1MB3 LINE L1 -263 5920 5570 650 290 65 0 chrX 7299888 7300102 -155299828 + MER58B DNA MER1_type 1 228 -113 2053 132 0 0 chrX 7300163 7300464 -155299466 + AluJb SINE Alu 1 301 0 180 0 0 0 chrX 7301241 7301261 -155298669 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 2036 71 0 23 chrX 7302415 7302681 -155297249 + AluSg SINE Alu 1 260 -50 206 346 63 31 chrX 7304514 7304641 -155295289 + MIR SINE MIR 19 149 -113 1030 188 28 5 chrX 7304949 7305162 -155294768 - MER20 DNA MER1_type -1 218 1 2404 103 0 3 chrX 7305293 7305605 -155294325 - AluSx SINE Alu 0 312 2 532 182 153 86 chrX 7305950 7306159 -155293771 + MER58A DNA MER1_type 2 224 0 1253 144 25 0 chrX 7307124 7307325 -155292605 + MER2 DNA MER2_type 1 206 -139 28 61 0 0 chrX 7307325 7307374 -155292556 + AT_rich Low_complexity Low_complexity 1 49 0 1655 122 0 0 chrX 7307404 7307634 -155292296 - AluJb SINE Alu -82 230 1 225 273 0 0 chrX 7307645 7307689 -155292241 + MER2 DNA MER2_type 302 345 0 214 147 59 15 chrX 7307706 7307774 -155292156 + (TA)n Simple_repeat Simple_repeat 2 72 0 1958 253 68 39 chrX 7307790 7307895 -155292035 - L1MEc LINE L1 -4033 2363 2262 1083 144 20 10 chrX 7307895 7308090 -155291840 - L1PA13 LINE L1 0 6163 5967 1958 253 68 39 chrX 7308090 7308975 -155290955 - L1MEc LINE L1 -4134 2262 1345 2065 124 7 10 chrX 7309035 7309341 -155290589 - AluSx SINE Alu -7 305 1 216 362 34 0 chrX 7310952 7311101 -155288829 + MIR SINE MIR 15 168 -94 21 0 0 0 chrX 7311177 7311198 -155288732 + AT_rich Low_complexity Low_complexity 1 21 0 222 281 0 24 chrX 7311198 7311280 -155288650 + MIR SINE MIR 183 262 0 895 119 0 0 chrX 7311292 7311410 -155288520 - FLAM_C SINE Alu -25 118 1 415 265 88 6 chrX 7311711 7311892 -155288038 - MLT1F LTR MaLR -78 464 269 466 145 13 0 chrX 7311969 7312045 -155287885 - MER20 DNA MER1_type -113 106 30 1641 204 105 15 chrX 7312629 7313034 -155286896 + L1MB5 LINE L1 5689 6122 -58 828 123 0 43 chrX 7313034 7313172 -155286758 + FLAM_C SINE Alu 1 132 -1 1641 204 105 15 chrX 7313172 7313236 -155286694 + L1MB5 LINE L1 6122 6179 -1 378 0 0 0 chrX 7313244 7313286 -155286644 + (CAA)n Simple_repeat Simple_repeat 2 43 0 39 60 0 0 chrX 7316672 7316739 -155283191 + AT_rich Low_complexity Low_complexity 1 67 0 2049 110 11 14 chrX 7317368 7317689 -155282241 - AluSx SINE Alu 0 320 1 1270 161 96 45 chrX 7318477 7318812 -155281118 - L1MB7 LINE L1 -287 5897 5546 693 257 6 0 chrX 7319445 7319620 -155280310 - MER58B DNA MER1_type -3 338 163 808 187 91 5 chrX 7319897 7320095 -155279835 + MER20 DNA MER1_type 5 219 0 1631 182 0 33 chrX 7320327 7320634 -155279296 + AluJb SINE Alu 1 297 -15 2111 132 0 10 chrX 7321402 7321713 -155278217 - AluSx SINE Alu 0 312 5 1513 136 4 0 chrX 7321857 7322092 -155277838 - AluJb SINE Alu -16 296 61 203 345 124 48 chrX 7322706 7322851 -155277079 + MIR SINE MIR 20 175 -87 251 327 87 0 chrX 7324714 7324864 -155275066 - MIR SINE MIR -62 200 38 1536 175 0 56 chrX 7326546 7326849 -155273081 - AluJo SINE Alu -26 286 1 412 221 176 22 chrX 7326961 7327097 -155272833 + MER20 DNA MER1_type 1 157 -62 334 149 68 54 chrX 7327207 7327281 -155272649 + MIR3 SINE MIR 109 183 -25 1853 125 6 55 chrX 7327775 7328103 -155271827 - AluJb SINE Alu 0 312 1 1290 203 32 7 chrX 7328656 7328937 -155270993 - MLT1E1 LTR MaLR 0 654 367 353 173 10 175 chrX 7328984 7329104 -155270826 - MLT1E LTR MaLR -430 163 51 225 298 27 98 chrX 7329219 7329333 -155270597 + MARNA DNA Mariner 326 447 -139 1644 170 26 7 chrX 7329333 7329639 -155270291 + AluJb SINE Alu 1 312 0 2269 69 0 0 chrX 7329643 7329933 -155269997 + AluSc SINE Alu 1 290 -19 225 298 27 98 chrX 7329933 7330038 -155269892 + MARNA DNA Mariner 450 534 -52 1226 229 93 34 chrX 7331915 7332356 -155267574 - MLT1C LTR MaLR 0 467 1 2538 91 37 6 chrX 7334659 7335012 -155264918 + THE1B LTR MaLR 1 364 0 1552 122 3 107 chrX 7335558 7335885 -155264045 - AluJb SINE Alu -19 293 1 1839 235 26 22 chrX 7335960 7336458 -155263472 - L1ME1 LINE L1 -101 6065 5566 1213 151 31 5 chrX 7337595 7337905 -155262025 + MLT1A1 LTR MaLR 1 365 0 1564 147 90 4 chrX 7338030 7338296 -155261634 + AluJb SINE Alu 7 295 -17 2166 174 10 17 chrX 7339054 7339469 -155260461 + L1MB3 LINE L1 5730 6141 -42 1266 174 8 28 chrX 7339469 7339722 -155260208 + AluJo SINE Alu 42 289 -23 299 115 0 0 chrX 7339728 7339780 -155260150 + L1MB3 LINE L1 6125 6176 -7 891 287 60 51 chrX 7340037 7340235 -155259695 + L1MD2 LINE L1 5710 5905 -454 2147 116 0 6 chrX 7340235 7340546 -155259384 + AluSx SINE Alu 1 309 -3 891 287 60 51 chrX 7340546 7340779 -155259151 + L1MD2 LINE L1 5905 6145 -214 590 264 122 10 chrX 7341549 7341746 -155258184 - MER20 DNA MER1_type 0 219 1 489 205 26 43 chrX 7342096 7342213 -155257717 + LTR8A LTR ERV1 1 115 -612 12755 161 66 52 chrX 7342213 7342248 -155257682 + HUERS-P1 LTR ERV1 1978 2011 -4587 450 0 0 0 chrX 7342248 7342298 -155257632 + (TA)n Simple_repeat Simple_repeat 1 50 0 12755 161 66 52 chrX 7342298 7343789 -155256141 + HUERS-P1 LTR ERV1 2011 3481 -3117 1758 62 9 0 chrX 7343789 7344016 -155255914 + AluY SINE Alu 50 278 -33 12755 161 66 52 chrX 7344016 7345981 -155253949 + HUERS-P1 LTR ERV1 3481 6257 -341 784 176 171 40 chrX 7346024 7346223 -155253707 + HUERS-P1 LTR ERV1 6050 6274 -57 1528 220 36 3 chrX 7346301 7346610 -155253320 + HUERS-P1 LTR ERV1 5945 6263 0 2526 178 78 68 chrX 7346610 7347330 -155252600 + LTR8A LTR ERV1 1 727 0 1504 186 43 25 chrX 7347845 7348168 -155251762 - MER77 LTR ERV1 0 605 277 2148 108 78 9 chrX 7349607 7349941 -155249989 - MLT1A1 LTR MaLR 0 365 9 595 299 54 9 chrX 7350108 7350332 -155249598 - MIR SINE MIR 0 262 29 300 261 67 59 chrX 7350332 7350451 -155249479 + L1MCa LINE L1 1937 2056 -4370 330 234 0 0 chrX 7350469 7350533 -155249397 - MER2 DNA MER2_type 0 345 282 1989 111 7 10 chrX 7350540 7350828 -155249102 + AluSx SINE Alu 1 287 -25 21 0 0 0 chrX 7350902 7350923 -155249007 + AT_rich Low_complexity Low_complexity 1 21 0 488 143 0 0 chrX 7350925 7351002 -155248928 - MER83B LTR ERV1 -76 302 226 1588 174 0 14 chrX 7351035 7351322 -155248608 - AluJb SINE Alu -29 283 1 1527 187 21 3 chrX 7351324 7351439 -155248491 - AluJb SINE Alu -16 296 184 216 0 0 0 chrX 7351439 7351463 -155248467 + (C)n Simple_repeat Simple_repeat 1 24 0 1527 187 21 3 chrX 7351463 7351636 -155248294 - AluJb SINE Alu -128 184 3 2251 89 0 22 chrX 7352360 7352674 -155247256 + AluSq SINE Alu 1 307 -6 324 230 82 59 chrX 7354424 7354559 -155245371 + MER74B LTR ERVL 472 609 -13 268 333 0 0 chrX 7354593 7354671 -155245259 - MIR3 SINE MIR -12 196 119 336 263 0 0 chrX 7354921 7354997 -155244933 + MER2 DNA MER2_type 270 345 0 1180 227 0 0 chrX 7355009 7355229 -155244701 - MER58A DNA MER1_type -4 220 1 875 167 48 12 chrX 7355999 7356167 -155243763 + MER20 DNA MER1_type 46 219 0 1844 196 37 0 chrX 7356661 7357013 -155242917 - MLT1A1 LTR MaLR 0 365 1 289 275 111 0 chrX 7357200 7357344 -155242586 - MIR3 SINE MIR -62 146 4 237 352 101 25 chrX 7358083 7358242 -155241688 + MIR SINE MIR 17 187 -75 1606 168 9 37 chrX 7361061 7361382 -155238548 + AluJb SINE Alu 1 312 0 822 174 0 0 chrX 7362056 7362194 -155237736 - AluJb SINE Alu -19 293 156 1813 121 49 39 chrX 7362471 7362778 -155237152 - AluJo SINE Alu -2 310 1 1600 185 3 3 chrX 7363175 7363467 -155236463 + AluJo SINE Alu 2 293 -19 853 228 20 18 chrX 7364236 7364458 -155235472 - MER20 DNA MER1_type 0 219 7 204 182 0 0 chrX 7364898 7364942 -155234988 + (CGG)n Simple_repeat Simple_repeat 3 46 0 426 272 0 0 chrX 7365705 7365867 -155234063 + (TG)n Simple_repeat Simple_repeat 1 162 0 469 248 46 0 chrX 7366902 7367011 -155232919 - MER58A DNA MER1_type 0 224 111 2097 178 27 5 chrX 7367017 7367393 -155232537 - MLT1B LTR MaLR -6 384 1 482 211 26 26 chrX 7367392 7367506 -155232424 - MER58A DNA MER1_type 0 116 3 * 1443 173 24 0 chrX 7367521 7367658 -155232272 - AluJo SINE Alu -46 266 119 207 0 0 0 chrX 7367658 7367681 -155232249 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1443 173 24 0 chrX 7367681 7367797 -155232133 - AluJo SINE Alu -193 119 7 2255 95 3 3 chrX 7367912 7368218 -155231712 + AluSx SINE Alu 1 306 -6 2141 108 0 0 chrX 7369169 7369466 -155230464 - AluSx SINE Alu -15 297 1 1255 121 5 33 chrX 7371144 7371395 -155228535 + AluSq SINE Alu 74 318 0 1943 82 56 0 chrX 7371450 7371757 -155228173 + AluSp SINE Alu 1 322 0 1181 175 9 31 chrX 7371822 7372045 -155227885 + MER58A DNA MER1_type 7 224 0 459 276 85 35 chrX 7372317 7372516 -155227414 - MIR SINE MIR -21 241 33 964 62 86 0 chrX 7373604 7373732 -155226198 - MER85 DNA T2_type 0 139 1 814 227 75 14 chrX 7373748 7374026 -155225904 + MER33 DNA MER1_type 30 324 0 180 0 0 0 chrX 7374197 7374217 -155225713 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1859 154 3 0 chrX 7374248 7374534 -155225396 + AluJo SINE Alu 1 287 -25 1790 176 4 4 chrX 7374560 7374838 -155225092 + AluJo SINE Alu 1 278 -34 2556 219 44 4 chrX 7375053 7375593 -155224337 - MER68 LTR ERV1 0 562 1 2066 116 0 0 chrX 7375737 7376005 -155223925 - AluSx SINE Alu -10 302 35 269 136 0 0 chrX 7376741 7376785 -155223145 - L1MB5 LINE L1 -112 6062 6019 769 265 95 14 chrX 7377571 7377865 -155222065 + L1MD2 LINE L1 5804 6121 -238 514 270 20 7 chrX 7377884 7378032 -155221898 + L1MD3 LINE L1 7832 7981 -14 1139 99 14 94 chrX 7378227 7378440 -155221490 + MER30 DNA MER1_type 1 196 -34 2007 147 0 19 chrX 7378912 7379219 -155220711 + AluJo SINE Alu 1 301 -11 1190 133 12 0 chrX 7379219 7379384 -155220546 + AluJo/FRAM SINE Alu 138 304 -8 600 259 7 0 chrX 7379386 7379529 -155220401 - MER82 DNA MER2_type -485 168 25 291 211 0 0 chrX 7379988 7380083 -155219847 + GA-rich Low_complexity Low_complexity 5 99 0 181 279 174 0 chrX 7380728 7380814 -155219116 + MER5B DNA MER1_type 14 114 -64 1579 179 47 24 chrX 7381361 7381657 -155218273 + AluJo SINE Alu 1 303 -9 595 294 93 57 chrX 7382086 7382231 -155217699 + L1M4 LINE L1 1146 1284 -5528 1480 170 129 15 chrX 7382231 7382502 -155217428 + AluJo SINE Alu 1 302 0 595 294 93 57 chrX 7382502 7382560 -155217370 + L1M4 LINE L1 1284 1338 -5474 1810 145 134 31 chrX 7382560 7382947 -155216983 - MSTA LTR MaLR 0 428 2 595 294 93 57 chrX 7382947 7383376 -155216554 + L1M4 LINE L1 1338 1949 -4863 1676 155 50 0 chrX 7385358 7385636 -155214294 + AluJb SINE Alu 1 292 -20 2116 119 26 19 chrX 7386701 7387011 -155212919 + AluJb SINE Alu 1 312 0 881 160 0 0 chrX 7387508 7387639 -155212291 - FLAM_C SINE Alu -2 131 1 1959 125 27 27 chrX 7387818 7388115 -155211815 + AluJo SINE Alu 1 297 -15 2377 106 3 0 chrX 7389084 7389395 -155210535 - AluSx SINE Alu 0 312 1 2313 108 0 3 chrX 7390180 7390486 -155209444 - AluSx SINE Alu -7 305 1 930 103 8 0 chrX 7390746 7390872 -155209058 - FLAM_C SINE Alu -16 127 1 778 286 128 10 chrX 7391104 7391517 -155208413 - LTR16B LTR ERVL 0 464 3 396 187 18 10 chrX 7391985 7392060 -155207870 + MER20 DNA MER1_type 3 57 -162 1871 198 15 0 chrX 7392060 7392403 -155207527 - MER7A DNA MER2_type 0 346 1 396 187 18 10 chrX 7392403 7392424 -155207506 + MER20 DNA MER1_type 57 76 -143 361 241 12 0 chrX 7392834 7392917 -155207013 - MER58A DNA MER1_type -22 85 2 192 77 0 0 chrX 7393836 7393862 -155206068 + (TC)n Simple_repeat Simple_repeat 2 27 0 27 62 0 0 chrX 7394009 7394057 -155205873 + AT_rich Low_complexity Low_complexity 1 48 0 1139 144 78 6 chrX 7398342 7398522 -155201408 + AluJb SINE Alu 89 281 -31 1944 168 3 0 chrX 7398527 7398831 -155201099 - AluSx SINE Alu -7 305 1 236 263 178 33 chrX 7398967 7399119 -155200811 + L2 LINE L2 1527 1700 -1614 753 256 80 75 chrX 7399415 7399951 -155199979 - LTR67 LTR ERVL -8 549 11 8029 109 47 6 chrX 7400344 7401586 -155198344 + HSMAR2 DNA Mariner 9 1301 -1 1479 190 15 0 chrX 7401841 7402110 -155197820 + Tigger3(Golem) DNA MER2_type 2766 3038 0 225 0 0 0 chrX 7402739 7402764 -155197166 + (A)n Simple_repeat Simple_repeat 1 25 0 1584 197 21 58 chrX 7403750 7404333 -155195597 + LTR27 LTR ERV1 1 636 0 876 272 130 25 chrX 7404596 7404997 -155194933 + L2 LINE L2 2854 3296 -17 1536 171 45 31 chrX 7405293 7405580 -155194350 + AluJo SINE Alu 1 291 -21 2108 148 26 0 chrX 7406631 7406970 -155192960 + MER7A DNA MER2_type 1 346 0 1218 128 137 10 chrX 7407934 7408138 -155191792 + AluSx SINE Alu 64 293 -19 2276 117 3 13 chrX 7409339 7409648 -155190282 + AluSx SINE Alu 1 306 -6 2400 106 6 0 chrX 7410558 7410869 -155189061 + AluSq SINE Alu 1 313 0 743 183 0 0 chrX 7413221 7413347 -155186583 - FLAM_A SINE Alu -7 126 1 274 326 39 31 chrX 7413643 7413772 -155186158 + L2 LINE L2 3141 3270 -2 1700 158 12 79 chrX 7413777 7414106 -155185824 + AluJo SINE Alu 1 307 -5 1534 202 92 0 chrX 7414108 7414479 -155185451 + L1MB7 LINE L1 5780 6184 0 1591 176 49 14 chrX 7414486 7414770 -155185160 + AluJb SINE Alu 1 294 -18 2039 128 6 3 chrX 7415370 7415682 -155184248 - AluSq SINE Alu 0 313 1 712 106 0 0 chrX 7415682 7415776 -155184154 - AluSq/x SINE Alu -178 134 41 716 212 35 6 chrX 7416005 7416175 -155183755 + MER20 DNA MER1_type 1 175 -44 194 128 26 0 chrX 7416607 7416646 -155183284 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 191 242 19 25 chrX 7416705 7416862 -155183068 + GA-rich Low_complexity Low_complexity 2 157 0 207 100 0 0 chrX 7417500 7417530 -155182400 + (T)n Simple_repeat Simple_repeat 1 30 0 959 162 14 0 chrX 7417893 7418041 -155181889 + FRAM SINE Alu 1 146 -30 180 77 0 0 chrX 7418048 7418074 -155181856 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2051 136 3 23 chrX 7418363 7418671 -155181259 + AluJo SINE Alu 1 302 -10 1437 143 95 0 chrX 7419040 7419271 -155180659 - AluJo SINE Alu -25 287 35 2170 113 0 0 chrX 7419583 7419858 -155180072 + AluSx SINE Alu 1 275 -37 894 125 0 56 chrX 7419858 7420002 -155179928 + AluJb SINE Alu 172 307 -5 731 132 6 93 chrX 7420623 7420805 -155179125 - L1MD3 LINE L1 -8 7987 7822 2087 132 20 0 chrX 7420814 7421110 -155178820 + AluSx SINE Alu 1 302 -10 2293 97 3 0 chrX 7421186 7421476 -155178454 + AluSq SINE Alu 6 296 -17 503 193 67 8 chrX 7421519 7421638 -155178292 - L1ME4a LINE L1 -34 6087 5962 2298 87 0 13 chrX 7421729 7422028 -155177902 + AluSx SINE Alu 2 296 -16 261 0 0 0 chrX 7423768 7423797 -155176133 + (A)n Simple_repeat Simple_repeat 1 29 0 200 182 0 0 chrX 7423936 7423969 -155175961 + GA-rich Low_complexity Low_complexity 5 37 0 1026 206 14 14 chrX 7424455 7424664 -155175266 - MER58A DNA MER1_type -15 209 1 857 160 0 0 chrX 7425590 7425740 -155174190 - L1MB5 LINE L1 -8 6166 6017 1617 120 70 94 chrX 7425744 7426184 -155173746 + THE1C LTR MaLR 1 375 0 1092 157 10 5 chrX 7426188 7426385 -155173545 - L1MB5 LINE L1 -161 6013 5816 736 173 8 0 chrX 7426390 7426517 -155173413 - FLAM_C SINE Alu -11 132 5 1695 156 15 7 chrX 7426548 7426817 -155173113 - AluJb SINE Alu -34 278 8 876 171 56 60 chrX 7426825 7426977 -155172953 - L1MB5 LINE L1 -348 5826 5674 1961 152 7 0 chrX 7426977 7427266 -155172664 - AluJo SINE Alu -21 291 1 876 171 56 60 chrX 7427266 7427329 -155172601 - L1MB5 LINE L1 -500 5674 5612 2284 106 3 0 chrX 7427329 7427621 -155172309 - AluSx SINE Alu -19 293 1 392 141 14 28 chrX 7427621 7427692 -155172238 + MLT1A1 LTR MaLR 295 364 -1 550 122 41 10 chrX 7428272 7428370 -155171560 + L1MB7 LINE L1 5816 5916 -268 695 214 6 40 chrX 7428378 7428551 -155171379 + L1MB7 LINE L1 6002 6168 -16 1707 171 24 20 chrX 7428833 7429125 -155170805 - AluJo SINE Alu -18 294 2 1220 226 40 17 chrX 7429161 7429457 -155170473 + MLT1D LTR MaLR 1 303 -202 1044 172 0 6 chrX 7429457 7429631 -155170299 + FRAM SINE Alu 1 172 -4 2142 105 54 0 chrX 7429852 7430146 -155169784 + AluSg SINE Alu 1 310 0 285 315 35 14 chrX 7431751 7431894 -155168036 + MLT1J LTR MaLR 11 156 -355 2187 102 0 84 chrX 7431894 7432229 -155167701 + AluSq SINE Alu 1 307 -6 910 243 65 81 chrX 7432266 7432637 -155167293 + MLT1J LTR MaLR 147 511 0 2078 135 20 0 chrX 7483099 7483395 -155116535 - AluJb SINE Alu -2 310 9 2212 111 0 16 chrX 7483502 7483817 -155116113 + AluSq SINE Alu 1 310 -3 1905 165 0 13 chrX 7485840 7486156 -155113774 + AluJb SINE Alu 1 312 0 261 306 89 6 chrX 7486376 7486533 -155113397 + MER5B DNA MER1_type 1 170 -8 1157 146 6 6 chrX 7486569 7486747 -155113183 - AluJb SINE Alu 0 312 135 379 260 0 0 chrX 7487248 7487344 -155112586 + MER5A DNA MER1_type 1 96 -93 1822 155 52 14 chrX 7487359 7487708 -155112222 - THE1C LTR MaLR -13 362 1 1517 171 59 39 chrX 7487817 7488122 -155111808 - AluJo SINE Alu -1 311 1 2318 123 0 0 chrX 7488370 7488680 -155111250 - AluSx SINE Alu 0 312 3 266 0 29 0 chrX 7489303 7489337 -155110593 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 530 213 16 8 chrX 7489430 7489552 -155110378 + MLT1A2 LTR MaLR 200 322 -52 254 111 0 0 chrX 7489559 7489595 -155110335 - Alu SINE Alu -263 37 2 307 221 0 0 chrX 7489612 7489680 -155110250 - L1MB3 LINE L1 -178 6005 5938 2423 62 0 10 chrX 7489954 7490245 -155109685 - AluSp SINE Alu -2 311 24 640 194 148 46 chrX 7490526 7490700 -155109230 - MER20 DNA MER1_type -3 216 18 1972 128 54 20 chrX 7490700 7490749 -155109181 - MLT1A1 LTR MaLR 0 365 319 2507 74 3 0 chrX 7490749 7491048 -155108882 + AluSp SINE Alu 10 309 -4 1972 128 54 20 chrX 7491048 7491351 -155108579 - MLT1A1 LTR MaLR -46 319 1 640 194 148 46 chrX 7491351 7491372 -155108558 - MER20 DNA MER1_type -201 18 1 414 0 0 0 chrX 7492972 7493018 -155106912 + (TG)n Simple_repeat Simple_repeat 1 46 0 362 269 59 25 chrX 7493063 7493182 -155106748 - MLT1K LTR MaLR -6 582 460 812 193 56 0 chrX 7493368 7493529 -155106401 + MER20 DNA MER1_type 2 171 -48 201 39 0 0 chrX 7493995 7494021 -155105909 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 304 303 81 10 chrX 7494069 7494168 -155105762 - AluJb SINE Alu -21 281 176 807 145 105 23 chrX 7495096 7495268 -155104662 - AluJo SINE Alu -6 306 121 182 341 35 0 chrX 7495571 7495656 -155104274 + MIR SINE MIR 59 146 -116 246 154 31 15 chrX 7495853 7495918 -155104012 + CT-rich Low_complexity Low_complexity 1 66 0 1312 267 23 32 chrX 7495934 7495963 -155103967 - L1MB7 LINE L1 -11 6173 6145 748 181 0 0 chrX 7495963 7496096 -155103834 - AluJo SINE Alu -169 133 1 1312 267 23 32 chrX 7496096 7496497 -155103433 - L1MB7 LINE L1 -39 6145 5747 2666 53 0 0 chrX 7497427 7497728 -155102202 - AluY SINE Alu -10 301 1 548 203 108 0 chrX 7498212 7498360 -155101570 + L1MB8 LINE L1 5900 6063 -115 600 301 25 20 chrX 7498850 7499107 -155100823 - L1ME1 LINE L1 -165 6001 5781 1714 153 62 7 chrX 7499649 7499937 -155099993 - AluJb SINE Alu -8 304 1 341 273 32 71 chrX 7500090 7500244 -155099686 + HAL1b LINE L1 1200 1347 -1 2183 135 0 3 chrX 7500313 7500624 -155099306 - AluSq SINE Alu -3 310 1 1841 132 10 65 chrX 7501128 7501438 -155098492 + AluJo SINE Alu 1 293 -19 25 0 0 0 chrX 7501651 7501676 -155098254 + AT_rich Low_complexity Low_complexity 1 25 0 266 204 0 0 chrX 7501681 7501725 -155098205 - AluJ/monomer SINE Alu -258 44 1 1821 146 31 121 chrX 7502466 7502767 -155097163 - L1MD3 LINE L1 0 7995 7669 2011 133 0 17 chrX 7502767 7503069 -155096861 - AluSx SINE Alu -15 297 1 1821 146 31 121 chrX 7503069 7503282 -155096648 - L1MD3 LINE L1 -326 7669 7310 23 0 0 44 chrX 7503581 7503598 -155096332 + AT_rich Low_complexity Low_complexity 1 17 -26 1947 155 7 7 chrX 7503598 7503895 -155096035 + AluJb SINE Alu 1 297 -15 2323 103 0 7 chrX 7503899 7504200 -155095730 + AluSq SINE Alu 1 299 -14 23 0 0 44 chrX 7504200 7504222 -155095708 + AT_rich Low_complexity Low_complexity 20 43 0 674 262 52 0 chrX 7504367 7504577 -155095353 - MER58A DNA MER1_type -2 222 2 922 237 17 58 chrX 7505178 7505473 -155094457 - L1ME3A LINE L1 -83 6087 5805 1559 153 0 12 chrX 7505481 7505656 -155094274 - AluJo SINE Alu -4 308 135 2321 104 0 3 chrX 7505656 7505964 -155093966 - AluY SINE Alu -4 307 1 1559 153 0 12 chrX 7505964 7506037 -155093893 - AluJo SINE Alu -177 135 63 3009 9 0 0 chrX 7507592 7507910 -155092020 + AluYb8 SINE Alu 1 318 0 216 319 75 43 chrX 7507988 7508082 -155091848 + MIR SINE MIR 22 118 -90 1988 142 26 3 chrX 7509935 7510237 -155089693 + AluJb SINE Alu 1 309 -3 1768 186 0 0 chrX 7510397 7510687 -155089243 - AluJo SINE Alu -22 290 1 703 188 106 69 chrX 7510691 7510825 -155089105 - L1MD1 LINE L1 -14 6228 6081 1825 135 3 53 chrX 7510825 7511128 -155088802 - AluJb SINE Alu -8 304 17 703 188 106 69 chrX 7511128 7511211 -155088719 - L1MD1 LINE L1 -161 6081 6003 366 115 0 33 chrX 7511882 7511943 -155087987 - AluJ/FLAM SINE Alu -227 75 17 294 203 16 0 chrX 7511943 7512007 -155087923 - L1MD1 LINE L1 -146 6096 6032 248 303 101 0 chrX 7512124 7512213 -155087717 - MIR3 SINE MIR -15 193 96 1607 197 87 32 chrX 7512736 7513172 -155086758 - MLT1C LTR MaLR -7 460 1 293 269 37 9 chrX 7513189 7513297 -155086633 - L1ME3A LINE L1 -14 6156 6046 1516 54 19 0 chrX 7514480 7514685 -155085245 + L1PA7 LINE L1 5946 6154 0 225 0 0 0 chrX 7514925 7514950 -155084980 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 7515405 7515427 -155084503 + AT_rich Low_complexity Low_complexity 1 22 0 1982 132 0 35 chrX 7516745 7517063 -155082867 - AluJb SINE Alu -1 311 5 2391 89 0 10 chrX 7517898 7518200 -155081730 + AluSq SINE Alu 1 299 -14 2231 100 0 4 chrX 7518310 7518590 -155081340 + AluSx SINE Alu 1 279 -33 1072 197 5 5 chrX 7519423 7519636 -155080294 + MER20 DNA MER1_type 3 215 -4 290 271 25 42 chrX 7519654 7519772 -155080158 - L1ME LINE L1 -396 5774 5659 2346 107 0 0 chrX 7519811 7520102 -155079828 - AluSx SINE Alu -21 291 1 1618 213 74 12 chrX 7520143 7520547 -155079383 + L1MB2 LINE L1 5727 6155 -16 1582 208 0 10 chrX 7520554 7520847 -155079083 - AluJo SINE Alu -21 291 2 240 213 27 0 chrX 7521309 7521379 -155078551 - LTR41 LTR ERVL 0 795 720 407 259 43 0 chrX 7521418 7521534 -155078396 + MER58B DNA MER1_type 220 340 -1 502 286 164 64 chrX 7521586 7522208 -155077722 - LTR41 LTR ERVL -87 686 3 694 182 23 8 chrX 7523006 7523138 -155076792 - FAM SINE Alu -20 165 32 1858 124 0 72 chrX 7523778 7523915 -155076015 + AluJo SINE Alu 14 120 -192 2623 7 0 24 chrX 7523915 7524239 -155075691 + AluYa5 SINE Alu 1 317 0 1858 124 0 72 chrX 7524239 7524407 -155075523 + AluJo SINE Alu 120 298 -14 2524 79 0 0 chrX 7524933 7525238 -155074692 - AluY SINE Alu -6 305 1 216 0 0 0 chrX 7525463 7525487 -155074443 + (T)n Simple_repeat Simple_repeat 1 24 0 2301 117 0 0 chrX 7527585 7527922 -155072008 - AluSg SINE Alu 0 337 1 1519 158 3 110 chrX 7527922 7528258 -155071672 - AluJb SINE Alu -12 300 1 2271 116 0 19 chrX 7528321 7528639 -155071291 - AluSx SINE Alu 0 312 1 2438 149 15 22 chrX 7528670 7529126 -155070804 - L1MB3 LINE L1 -3 6180 5728 1610 181 0 28 chrX 7529328 7529610 -155070320 + AluJb SINE Alu 15 288 -24 482 236 192 33 chrX 7531389 7531571 -155068359 - MER58A DNA MER1_type -5 219 9 2379 88 3 7 chrX 7531661 7531967 -155067963 + AluSg SINE Alu 1 305 -5 782 192 85 6 chrX 7532090 7532267 -155067663 + L1MB7 LINE L1 5466 5656 -524 1862 187 63 0 chrX 7532272 7532668 -155067262 + L1MB7 LINE L1 5755 6175 -9 687 111 10 0 chrX 7533981 7534080 -155065850 - HY3 scRNA scRNA -1 100 1 2055 146 0 31 chrX 7534167 7534489 -155065441 + AluJb SINE Alu 1 312 0 433 261 213 37 chrX 7535011 7535279 -155064651 - L1MB3 LINE L1 -2164 5644 5330 198 271 153 76 chrX 7535315 7535459 -155064471 + L3 LINE CR1 1163 1317 -260 408 111 136 0 chrX 7535632 7535713 -155064217 - MER21A LTR ERV1 -1 930 839 333 211 40 47 chrX 7535803 7535943 -155063987 - L1MB8 LINE L1 -122 6061 5920 868 163 88 0 chrX 7536186 7536333 -155063597 - FRAM SINE Alu -6 160 1 21 36 0 0 chrX 7538379 7538407 -155061523 + AT_rich Low_complexity Low_complexity 1 28 0 204 200 0 0 chrX 7538413 7538458 -155061472 + GA-rich Low_complexity Low_complexity 4 48 0 1048 168 0 0 chrX 7538460 7538615 -155061315 - FAM SINE Alu -30 155 1 2037 111 21 0 chrX 7538622 7538939 -155060991 - AluSx SINE Alu 0 323 1 318 259 95 43 chrX 7542847 7542963 -155056967 - MER5A DNA MER1_type -67 122 1 291 54 0 0 chrX 7543731 7543768 -155056162 + (T)n Simple_repeat Simple_repeat 1 37 0 672 167 0 0 chrX 7543881 7543983 -155055947 - FRAM SINE Alu -13 163 62 22 0 0 0 chrX 7544053 7544075 -155055855 + AT_rich Low_complexity Low_complexity 1 22 0 945 135 0 0 chrX 7544306 7544432 -155055498 + FLAM_C SINE Alu 1 126 -17 25 0 0 0 chrX 7544437 7544462 -155055468 + AT_rich Low_complexity Low_complexity 1 25 0 1972 138 17 3 chrX 7545051 7545347 -155054583 + AluJo SINE Alu 1 300 -12 2042 155 52 8 chrX 7545829 7546229 -155053701 - L1MB2 LINE L1 -6 6165 5748 952 141 7 0 chrX 7546743 7546878 -155053052 + AluJo SINE Alu 1 136 -176 613 228 22 0 chrX 7547254 7547390 -155052540 + MER3 DNA MER1_type 23 161 -48 1788 176 0 0 chrX 7547832 7548122 -155051808 - AluJo SINE Alu -22 290 1 2316 124 0 0 chrX 7549463 7549770 -155050160 + AluSx SINE Alu 1 307 -5 213 219 0 0 chrX 7551011 7551084 -155048846 + (TG)n Simple_repeat Simple_repeat 2 74 0 442 232 6 11 chrX 7551097 7551278 -155048652 + (TG)n Simple_repeat Simple_repeat 1 180 0 1916 153 29 13 chrX 7551356 7551663 -155048267 + AluJo SINE Alu 1 312 0 1651 154 0 84 chrX 7552474 7552807 -155047123 - AluJb SINE Alu 0 307 1 922 213 63 29 chrX 7552807 7553046 -155046884 - MER58B DNA MER1_type -21 320 74 2393 86 7 7 chrX 7553048 7553352 -155046578 + AluSx SINE Alu 1 304 -8 970 178 205 50 chrX 7556821 7557079 -155042851 + AluJo SINE Alu 5 302 0 1964 125 0 58 chrX 7558341 7558653 -155041277 + AluJb SINE Alu 2 295 -17 1898 177 21 23 chrX 7560352 7560736 -155039194 - MLT1B LTR MaLR -7 383 1 295 331 81 0 chrX 7561173 7561297 -155038633 + L2 LINE L2 3138 3271 -1 221 255 0 0 chrX 7561298 7561345 -155038585 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 755 178 0 6 chrX 7561385 7561565 -155038365 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 203 298 0 0 chrX 7561567 7561614 -155038316 + (TGGG)n Simple_repeat Simple_repeat 1 47 0 522 249 0 0 chrX 7561615 7561788 -155038142 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 317 389 56 5 chrX 7561823 7562021 -155037909 - L1 LINE L1 -2317 3829 3622 2044 148 3 6 chrX 7562912 7563223 -155036707 - AluJb SINE Alu -2 310 1 863 170 0 0 chrX 7563616 7563751 -155036179 + AluJo SINE Alu 1 135 -177 1471 158 60 34 chrX 7564263 7564528 -155035402 - AluJb SINE Alu -35 277 6 1297 174 54 8 chrX 7565564 7565823 -155034107 + L1MB7 LINE L1 5895 6165 -19 2387 72 30 7 chrX 7565891 7566196 -155033734 + AluSq SINE Alu 1 312 -1 399 289 35 0 chrX 7566224 7566338 -155033592 - MER58A DNA MER1_type 0 224 107 185 301 0 41 chrX 7567024 7567097 -155032833 + L3 LINE CR1 1321 1390 -187 998 242 9 22 chrX 7567106 7567329 -155032601 + MER58A DNA MER1_type 1 220 -4 1821 130 52 0 chrX 7568053 7568370 -155031560 + AluJo SINE Alu 1 331 0 4240 192 50 34 chrX 7568381 7569146 -155030784 + L1MC3 LINE L1 6701 7489 -296 2103 186 8 14 chrX 7569146 7569512 -155030418 - MLT1A1 LTR MaLR 0 365 2 4240 192 50 34 chrX 7569512 7569798 -155030132 + L1MC3 LINE L1 7489 7769 -16 783 138 0 0 chrX 7569803 7569912 -155030018 + AluJo/FLAM SINE Alu 2 110 -202 2416 88 0 0 chrX 7569913 7570207 -155029723 + AluSx SINE Alu 1 294 -18 907 102 0 16 chrX 7570234 7570362 -155029568 - FLAM_C SINE Alu -17 126 1 206 362 101 11 chrX 7570531 7570719 -155029211 + MIR SINE MIR 20 224 -38 1005 178 6 0 chrX 7571323 7571486 -155028444 + AluJo SINE Alu 122 285 -27 405 0 0 0 chrX 7571486 7571531 -155028399 + (CA)n Simple_repeat Simple_repeat 2 46 0 477 0 0 0 chrX 7571577 7571630 -155028300 + (CA)n Simple_repeat Simple_repeat 2 54 0 206 220 20 0 chrX 7573417 7573467 -155026463 + C-rich Low_complexity Low_complexity 3 53 0 247 329 24 0 chrX 7574425 7574507 -155025423 + MIR3 SINE MIR 84 167 -41 25 0 0 0 chrX 7574507 7574532 -155025398 + AT_rich Low_complexity Low_complexity 1 25 0 369 270 191 15 chrX 7575495 7575699 -155024231 - L1ME4a LINE L1 -18 6103 5864 512 305 118 40 chrX 7575748 7576122 -155023808 - L1ME4a LINE L1 -370 5751 5349 2257 94 0 14 chrX 7576881 7577201 -155022729 - AluSg SINE Alu 0 316 1 1250 192 64 91 chrX 7577659 7577865 -155022065 - MLT1A1 LTR MaLR 0 365 172 1789 144 3 34 chrX 7577865 7578157 -155021773 - AluJo SINE Alu -18 294 12 1250 192 64 91 chrX 7578157 7578325 -155021605 - MLT1A1 LTR MaLR -193 172 1 200 200 18 0 chrX 7578397 7578452 -155021478 + CT-rich Low_complexity Low_complexity 4 59 0 264 300 38 0 chrX 7578453 7578533 -155021397 - L2 LINE L2 -5 3267 3185 2428 95 0 0 chrX 7578703 7579008 -155020922 - AluSc SINE Alu -4 305 1 1724 188 114 10 chrX 7580256 7580661 -155019269 - MLT1F1 LTR MaLR 0 567 121 2487 203 52 29 chrX 7580663 7581060 -155018870 - L1MA10 LINE L1 -2 6332 5936 447 289 21 46 chrX 7581060 7581299 -155018631 - L1PA14 LINE L1 -238 5923 5691 287 255 149 11 chrX 7581328 7581422 -155018508 - MLT1F1 LTR MaLR -437 130 24 1556 214 0 16 chrX 7581428 7581737 -155018193 - AluJo SINE Alu -8 304 1 445 288 75 29 chrX 7581780 7582058 -155017872 - L1ME2 LINE L1 -133 6031 5741 341 261 0 0 chrX 7582270 7582358 -155017572 - MER58A DNA MER1_type -19 88 1 1837 169 7 0 chrX 7583736 7584032 -155015898 - AluJo SINE Alu -12 300 3 1677 160 53 53 chrX 7584034 7584334 -155015596 - AluJo SINE Alu -12 300 1 736 217 0 0 chrX 7585669 7585807 -155014123 + Tigger4(Zombi) DNA MER2_type 1 138 -2593 * 2997 169 11 4 chrX 7585801 7586323 -155013607 + Tigger4(Zombi) DNA MER2_type 2206 2731 0 2027 128 3 29 chrX 7586453 7586765 -155013165 + AluJb SINE Alu 9 312 0 256 293 30 0 chrX 7587900 7587999 -155011931 + (CA)n Simple_repeat Simple_repeat 1 102 0 291 217 40 0 chrX 7588010 7588162 -155011768 + (CA)n Simple_repeat Simple_repeat 1 158 0 424 301 23 11 chrX 7588216 7588392 -155011538 + (CA)n Simple_repeat Simple_repeat 2 179 0 2798 74 8 0 chrX 7589120 7589471 -155010459 + THE1A LTR MaLR 1 354 -1 2011 136 33 0 chrX 7589613 7589915 -155010015 + AluJb SINE Alu 1 312 0 2370 91 0 0 chrX 7590111 7590421 -155009509 - AluSx SINE Alu 0 310 1 873 93 0 0 chrX 7590638 7590745 -155009185 + AluSq/x SINE Alu 29 135 -178 1637 166 22 4 chrX 7590745 7591016 -155008914 + AluJo SINE Alu 1 276 -36 200 119 0 24 chrX 7591274 7591316 -155008614 + (TG)n Simple_repeat Simple_repeat 2 42 0 1683 164 7 20 chrX 7592867 7593159 -155006771 + AluJb SINE Alu 1 288 -24 632 218 36 62 chrX 7593265 7593490 -155006440 + MER20 DNA MER1_type 1 219 0 309 282 0 0 chrX 7593589 7593674 -155006256 - MER3 DNA MER1_type -124 85 1 305 239 0 0 chrX 7593885 7593952 -155005978 - MLT1A1 LTR MaLR 0 365 299 1818 108 68 0 chrX 7594202 7594451 -155005479 - AluSx SINE Alu -46 266 1 293 0 0 26 chrX 7594689 7594727 -155005203 + (TTA)n Simple_repeat Simple_repeat 3 39 0 729 173 0 0 chrX 7594747 7594857 -155005073 - FLAM_C SINE Alu -32 111 2 2191 109 0 45 chrX 7595479 7595790 -155004140 - AluSx SINE Alu -15 297 1 500 231 151 5 chrX 7597359 7597545 -155002385 + MER20 DNA MER1_type 1 213 -6 23 0 0 0 chrX 7597625 7597648 -155002282 + AT_rich Low_complexity Low_complexity 1 23 0 1905 164 0 13 chrX 7597648 7597953 -155001977 + AluJo SINE Alu 1 301 -11 800 163 0 0 chrX 7599009 7599138 -155000792 - AluJb SINE Alu -2 310 182 2144 103 25 0 chrX 7599175 7599456 -155000474 - AluSx SINE Alu -22 290 3 2690 39 0 3 chrX 7601068 7601375 -154998555 + AluY SINE Alu 1 306 -5 3149 157 52 96 chrX 7601604 7602398 -154997532 - MER21A LTR ERV1 -19 912 154 1425 149 5 0 chrX 7602398 7602634 -154997296 + AluJb SINE Alu 76 312 0 699 188 0 0 chrX 7602781 7602898 -154997032 + FAM SINE Alu 58 174 -11 866 240 5 0 chrX 7602913 7603105 -154996825 + L1MB3 LINE L1 5984 6176 -7 2092 95 95 0 chrX 7603278 7603562 -154996368 + AluSx SINE Alu 1 311 -1 2011 136 0 13 chrX 7604462 7604789 -154995141 - AluSx SINE Alu 0 312 1 967 217 5 0 chrX 7607434 7607632 -154992298 + L1ME2 LINE L1 5201 5399 -747 450 255 34 13 chrX 7609219 7609368 -154990562 - MLT1H LTR MaLR -373 176 25 422 260 181 15 chrX 7609424 7609628 -154990302 + MIR SINE MIR 10 247 -15 1651 151 7 11 chrX 7609846 7610118 -154989812 - AluJo SINE Alu -39 273 3 2421 112 0 0 chrX 7610188 7610500 -154989430 - AluSx SINE Alu 0 312 1 1087 264 70 23 chrX 7610594 7610992 -154988938 + L1ME2 LINE L1 5717 6133 -31 332 284 20 93 chrX 7611039 7611243 -154988687 + L1MC5 LINE L1 7726 7914 -47 2165 134 153 5 chrX 7611449 7611822 -154988108 - MSTA LTR MaLR 0 428 1 9097 167 25 1 chrX 7611822 7613421 -154986509 - MSTA-int LTR MaLR 0 1651 15 2449 97 129 5 chrX 7613439 7613820 -154986110 - MSTA LTR MaLR 0 428 1 240 35 0 0 chrX 7614593 7614622 -154985308 + (TG)n Simple_repeat Simple_repeat 2 30 0 1729 157 50 7 chrX 7614623 7614904 -154985026 - AluJo SINE Alu -19 293 1 2412 93 0 13 chrX 7615414 7615762 -154984168 - AluSg SINE Alu 0 310 1 1694 152 65 37 chrX 7616025 7616380 -154983550 - MLT1A1 LTR MaLR 0 365 1 2240 73 52 0 chrX 7616420 7616706 -154983224 - AluSq SINE Alu -12 301 1 341 276 75 68 chrX 7616785 7616895 -154983035 + L1MDa LINE L1 2205 2313 -4227 1792 149 4 7 chrX 7616895 7617176 -154982754 + AluJo SINE Alu 1 280 -32 243 0 0 0 chrX 7617176 7617203 -154982727 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 341 276 75 68 chrX 7617203 7617399 -154982531 + L1MDa LINE L1 2312 2514 -4026 1858 138 3 49 chrX 7617401 7617726 -154982204 + AluJo SINE Alu 3 312 0 417 263 105 12 chrX 7618054 7618225 -154981705 - HAL1 LINE L1 -2296 211 25 1922 56 9 4 chrX 7618336 7618569 -154981361 + AluSq SINE Alu 70 303 -10 1850 191 34 29 chrX 7618591 7619037 -154980893 - MLT1D LTR MaLR 0 505 58 508 203 0 14 chrX 7619042 7619180 -154980750 + CT-rich Low_complexity Low_complexity 4 139 0 1793 172 7 14 chrX 7619758 7620055 -154979875 + AluJo SINE Alu 6 300 -12 2293 91 7 10 chrX 7620177 7620474 -154979456 + AluSq SINE Alu 1 296 -17 2826 153 35 28 chrX 7620968 7621536 -154978394 - L1MB3 LINE L1 -1 6182 5611 2212 108 3 20 chrX 7621536 7621842 -154978088 - AluSx SINE Alu -10 302 2 1946 124 41 21 chrX 7621844 7622134 -154977796 - AluJo SINE Alu -14 298 3 2003 156 11 0 chrX 7622136 7622495 -154977435 - L1MB3 LINE L1 -353 5830 5468 2048 93 21 21 chrX 7622500 7622790 -154977140 + AluSx SINE Alu 1 290 -22 672 199 7 7 chrX 7622797 7622933 -154976997 - LTR47A LTR ERVL -316 136 1 280 231 0 31 chrX 7622933 7622998 -154976932 - LTR49 LTR ERV1 -503 92 30 290 267 190 0 chrX 7623000 7623116 -154976814 - Charlie4 DNA MER1_type -12 1949 1812 1732 152 17 21 chrX 7623116 7623406 -154976524 + AluJo SINE Alu 3 291 -21 827 96 20 14 chrX 7623586 7623732 -154976198 + (TTCC)n Simple_repeat Simple_repeat 1 147 0 531 173 4 12 chrX 7623933 7624180 -154975750 + (CA)n Simple_repeat Simple_repeat 1 245 0 314 299 53 40 chrX 7624219 7624540 -154975390 - L1ME4a LINE L1 -209 5912 5588 2142 120 0 0 chrX 7624544 7624835 -154975095 - AluSx SINE Alu -21 291 1 457 167 0 0 chrX 7625219 7625291 -154974639 - FLAM_A SINE Alu -19 123 52 356 274 190 34 chrX 7625404 7625667 -154974263 + L1ME3A LINE L1 5852 6155 -15 1874 229 24 2 chrX 7625852 7626311 -154973619 + L1MB7 LINE L1 5458 5926 -258 567 319 22 22 chrX 7626309 7626622 -154973308 - L1ME LINE L1 -301 5820 5508 * 1698 162 0 23 chrX 7627750 7628059 -154971871 + AluJo SINE Alu 1 302 -10 331 210 12 25 chrX 7628109 7628190 -154971740 - L1MC5 LINE L1 -46 7915 7836 2084 125 0 0 chrX 7628261 7628558 -154971372 - AluSx SINE Alu -15 297 1 1622 183 10 3 chrX 7628848 7629149 -154970781 - AluJb SINE Alu -9 303 1 244 223 96 71 chrX 7629208 7629348 -154970582 - L1MC5 LINE L1 -408 7587 7260 305 223 31 52 chrX 7629391 7629502 -154970428 - L1MC4 LINE L1 -637 7251 7063 693 213 4 12 chrX 7629502 7629766 -154970164 + CT-rich Low_complexity Low_complexity 1 261 0 857 180 0 6 chrX 7629789 7629967 -154969963 + CT-rich Low_complexity Low_complexity 4 180 0 1220 170 4 42 chrX 7629998 7630239 -154969691 - AluJo SINE Alu -44 268 37 677 110 80 0 chrX 7630308 7630408 -154969522 + FLAM_A SINE Alu 20 127 -15 257 235 0 106 chrX 7630410 7630495 -154969435 - L1MC5 LINE L1 -852 7109 7034 1495 153 19 0 chrX 7630563 7630824 -154969106 - AluJb SINE Alu -3 309 44 394 256 27 94 chrX 7630897 7631061 -154968869 - L1MC5 LINE L1 -109 7852 7705 1933 87 79 4 chrX 7631061 7631338 -154968592 - AluSc SINE Alu -11 298 1 394 256 27 94 chrX 7631338 7631396 -154968534 - L1MC5 LINE L1 -256 7705 7645 21 36 0 0 chrX 7631407 7631435 -154968495 + AT_rich Low_complexity Low_complexity 1 28 0 720 165 0 9 chrX 7631447 7631562 -154968368 - FLAM_C SINE Alu -28 115 2 362 238 80 23 chrX 7631599 7631782 -154968148 - L1MC4 LINE L1 -796 7074 6829 2405 93 0 0 chrX 7632149 7632460 -154967470 - AluSx SINE Alu -1 311 1 918 89 0 0 chrX 7632521 7632644 -154967286 - AluY SINE Alu -16 295 173 930 128 64 0 chrX 7633040 7633212 -154966718 - L1MB7 LINE L1 -1 6183 6001 525 274 82 29 chrX 7633215 7633423 -154966507 - L1MC4 LINE L1 -1125 6917 6699 1935 123 7 26 chrX 7633425 7633727 -154966203 - AluSx SINE Alu -16 296 1 1626 221 102 63 chrX 7633978 7634576 -154965354 - L1MC4a LINE L1 -1766 6042 5416 840 155 16 0 chrX 7634576 7634705 -154965225 - FLAM_C SINE Alu -2 131 1 1626 221 102 63 chrX 7634705 7634753 -154965177 - L1MC4a LINE L1 -2392 5416 5371 1084 237 94 51 chrX 7634776 7635147 -154964783 - MLT1F1 LTR MaLR -2 565 179 1119 183 17 38 chrX 7635185 7635425 -154964505 - AluJo SINE Alu -77 235 1 395 311 26 32 chrX 7635425 7635596 -154964334 - MLT1F1 LTR MaLR -376 166 1 461 304 91 70 chrX 7635596 7635857 -154964073 - L1MC4a LINE L1 -800 5346 5073 2113 139 14 17 chrX 7635857 7635930 -154964000 - MER2 DNA MER2_type 0 344 272 1955 144 0 3 chrX 7635930 7636222 -154963708 + AluSx SINE Alu 5 295 -17 2113 139 14 17 chrX 7636222 7636493 -154963437 - MER2 DNA MER2_type -72 272 1 461 304 91 70 chrX 7636493 7636603 -154963327 - L1MC4a LINE L1 -1073 5073 4967 2091 115 7 0 chrX 7636606 7636901 -154963029 - AluSx SINE Alu -6 306 10 2414 154 75 97 chrX 7637032 7637591 -154962339 - MLT2B3 LTR ERVL -7 547 1 323 293 13 51 chrX 7637677 7637834 -154962096 - L1MC4a LINE L1 -1487 4659 4509 504 277 0 0 chrX 7637919 7638056 -154961874 - L1ME LINE L1 -427 5739 5603 1950 107 50 7 chrX 7638561 7638860 -154961070 + AluSx SINE Alu 1 312 0 322 130 0 0 chrX 7638918 7638964 -154960966 - Alu SINE Alu -257 46 1 2617 142 9 34 chrX 7639509 7639946 -154959984 - MSTB LTR MaLR 0 426 1 363 228 87 11 chrX 7639968 7640060 -154959870 - MER5A DNA MER1_type -89 100 2 1326 122 173 0 chrX 7640390 7640627 -154959303 - AluJb SINE Alu -14 298 21 2178 94 74 12 chrX 7640948 7641287 -154958643 + LTR4 LTR ERV1 237 596 0 1558 170 7 0 chrX 7641287 7641564 -154958366 - AluJb SINE Alu -33 279 1 2382 73 0 0 chrX 7641591 7641894 -154958036 + AluY SINE Alu 1 303 -8 1106 119 0 0 chrX 7641926 7642094 -154957836 - L1MA5A LINE L1 0 6297 6130 665 184 22 15 chrX 7642126 7642262 -154957668 - FRAM SINE Alu -8 168 32 525 111 46 19 chrX 7642262 7642370 -154957560 - L1MA5A LINE L1 -166 6131 6021 267 342 141 16 chrX 7642471 7642655 -154957275 + L2 LINE L2 2471 2677 -637 2217 106 0 3 chrX 7643759 7644071 -154955859 - AluSx SINE Alu -1 311 1 416 319 38 23 chrX 7644214 7644477 -154955453 + L1PB3 LINE L1 5559 5825 -329 * 3282 164 13 0 chrX 7644268 7644822 -154955108 + L1MC1 LINE L1 5614 6174 -159 1874 177 9 0 chrX 7645645 7645973 -154953957 + L1MB7 LINE L1 5842 6172 -12 180 0 0 0 chrX 7645974 7645994 -154953936 + (TA)n Simple_repeat Simple_repeat 1 20 0 1332 97 0 0 chrX 7646347 7646523 -154953407 - AluSg/x SINE Alu -2 308 133 398 306 93 41 chrX 7646524 7646988 -154952942 + L1M4 LINE L1 4117 4604 -1542 239 273 0 15 chrX 7647172 7647238 -154952692 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 1787 154 0 13 chrX 7647387 7647685 -154952245 + AluJo SINE Alu 1 294 -18 1282 153 127 19 chrX 7647909 7648177 -154951753 - AluJb SINE Alu -13 299 3 986 100 7 0 chrX 7648177 7648317 -154951613 + Tigger1 DNA MER2_type 1794 1934 -484 3134 136 9 25 chrX 7648454 7648791 -154951139 + Tigger1 DNA MER2_type 1889 2217 -201 1929 122 7 10 chrX 7648791 7649087 -154950843 - AluJb SINE Alu -17 295 1 3134 136 9 25 chrX 7649087 7649278 -154950652 + Tigger1 DNA MER2_type 2217 2409 -9 369 75 0 0 chrX 7649278 7649331 -154950599 + (TG)n Simple_repeat Simple_repeat 1 53 0 2254 96 3 3 chrX 7649376 7649689 -154950241 + AluSp SINE Alu 1 313 0 333 191 143 12 chrX 7649926 7650010 -154949920 + L1ME4a LINE L1 6020 6114 -7 24 0 0 0 chrX 7650400 7650424 -154949506 + AT_rich Low_complexity Low_complexity 1 24 0 2125 93 7 0 chrX 7650430 7650720 -154949210 + AluSx SINE Alu 1 292 -20 4404 133 83 11 chrX 7650773 7651520 -154948410 + Tigger1 DNA MER2_type 789 1589 -829 746 155 148 0 chrX 7651919 7652061 -154947869 - Tigger1 DNA MER2_type -1467 951 789 186 43 0 0 chrX 7652091 7652114 -154947816 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chrX 7652697 7652722 -154947208 + AT_rich Low_complexity Low_complexity 1 25 0 2481 43 0 7 chrX 7653081 7653380 -154946550 - AluY SINE Alu -14 297 1 2806 90 16 38 chrX 7653435 7653610 -154946320 - L1MA3 LINE L1 0 6305 6128 2237 96 0 10 chrX 7653610 7653923 -154946007 - AluSg SINE Alu 0 310 1 2806 90 16 38 chrX 7653923 7654193 -154945737 - L1MA3 LINE L1 -177 6128 5870 273 291 70 25 chrX 7654196 7654354 -154945576 - L1ME4a LINE L1 -223 5898 5734 22 0 0 0 chrX 7654429 7654451 -154945479 + AT_rich Low_complexity Low_complexity 1 22 0 2110 86 0 4 chrX 7654495 7654775 -154945155 + AluSc SINE Alu 1 279 -30 381 43 0 0 chrX 7654783 7654830 -154945100 + (TA)n Simple_repeat Simple_repeat 1 47 0 278 285 86 7 chrX 7655118 7655269 -154944661 - L1ME LINE L1 -279 6165 6003 259 293 64 0 chrX 7655394 7655506 -154944424 - L1ME LINE L1 -747 5877 5757 228 274 74 30 chrX 7655521 7655656 -154944274 - L1ME LINE L1 -767 5683 5543 258 271 0 14 chrX 7655666 7655736 -154944194 - LTR33 LTR ERVL -10 511 443 300 257 0 0 chrX 7655740 7655810 -154944120 - MER2 DNA MER2_type -5 340 271 195 42 0 0 chrX 7655844 7655868 -154944062 + (TGG)n Simple_repeat Simple_repeat 3 26 0 432 151 0 14 chrX 7655873 7655946 -154943984 - FLAM_A SINE Alu -29 113 42 1605 132 11 44 chrX 7656006 7656279 -154943651 - MER2 DNA MER2_type -80 265 2 285 252 47 28 chrX 7656280 7656387 -154943543 - LTR33 LTR ERVL -76 445 337 433 248 88 55 chrX 7656723 7656997 -154942933 + LTR40b LTR ERVL 179 461 -1 1554 194 10 0 chrX 7657113 7657417 -154942513 + L1MA9 LINE L1 5966 6272 -40 1724 158 0 0 chrX 7657467 7657780 -154942150 + AluJo SINE Alu 5 317 0 2135 104 0 0 chrX 7657929 7658217 -154941713 + AluSx SINE Alu 1 288 -24 378 272 65 92 chrX 7658292 7658630 -154941300 - MLT1J2 LTR MaLR -119 331 3 2327 78 3 3 chrX 7658688 7658995 -154940935 - AluSc SINE Alu -2 307 1 431 316 94 38 chrX 7659070 7659336 -154940594 - L1ME LINE L1 -1304 5122 4842 2146 115 0 10 chrX 7659443 7659755 -154940175 - AluSx SINE Alu -3 309 1 248 275 55 11 chrX 7659766 7660012 -154939918 - L1MCa LINE L1 -4625 1801 1407 452 308 69 77 chrX 7660133 7660332 -154939598 - L1MCa LINE L1 -5504 912 716 2169 86 0 0 chrX 7660332 7660623 -154939307 + AluSx SINE Alu 1 291 -21 452 308 69 77 chrX 7660623 7660800 -154939130 - L1MCa LINE L1 -5700 716 539 712 229 77 39 chrX 7660988 7661214 -154938716 - L1MC/D LINE L1 -383 5738 5494 749 152 0 40 chrX 7661333 7661458 -154938472 + FLAM_A SINE Alu 4 123 -10 2193 64 0 67 chrX 7661466 7661795 -154938135 + AluY SINE Alu 1 307 -4 192 97 0 0 chrX 7661813 7661844 -154938086 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2017 92 3 14 chrX 7661853 7662136 -154937794 + AluSg1 SINE Alu 5 284 -25 186 133 0 0 chrX 7662136 7662166 -154937764 + (CA)n Simple_repeat Simple_repeat 1 30 0 1564 201 26 0 chrX 7662174 7662477 -154937453 + AluJo SINE Alu 1 311 -1 488 226 51 113 chrX 7662607 7662744 -154937186 - MER5A DNA MER1_type 0 189 66 2447 66 0 0 chrX 7662744 7663045 -154936885 - AluSc SINE Alu -8 301 1 488 226 51 113 chrX 7663045 7663102 -154936828 - MER5A DNA MER1_type -123 66 7 183 100 0 0 chrX 7663317 7663347 -154936583 + (CA)n Simple_repeat Simple_repeat 1 30 0 1023 139 69 56 chrX 7665062 7665278 -154934652 - MER20 DNA MER1_type 0 219 1 2150 74 11 3 chrX 7665344 7665628 -154934302 + AluSq SINE Alu 13 298 -15 260 68 91 23 chrX 7665662 7665706 -154934224 - MLT1A2 LTR MaLR 0 374 328 448 269 17 23 chrX 7665712 7665887 -154934043 - L1MC5 LINE L1 -714 7247 7074 2019 195 37 33 chrX 7666167 7666624 -154933306 - MLT1C LTR MaLR -2 465 7 674 225 11 78 chrX 7666853 7667044 -154932886 + MER45A DNA AcHobo 1 178 0 288 190 17 0 chrX 7667475 7667533 -154932397 - MER5A DNA MER1_type -122 67 9 1813 174 0 0 chrX 7667553 7667863 -154932067 + AluJb SINE Alu 1 310 -2 1799 206 49 62 chrX 7667905 7668375 -154931555 + MLT2B1 LTR ERVL 1 464 -56 258 32 0 0 chrX 7668383 7668414 -154931516 + (TC)n Simple_repeat Simple_repeat 1 31 0 198 0 0 0 chrX 7668414 7668436 -154931494 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 261 0 0 0 chrX 7668435 7668464 -154931466 + (GA)n Simple_repeat Simple_repeat 1 29 0 188 333 19 56 chrX 7668534 7668642 -154931288 + MIR SINE MIR 48 151 -111 1384 156 13 0 chrX 7668663 7668888 -154931042 + AluJb SINE Alu 62 289 -23 930 180 37 32 chrX 7668916 7669133 -154930797 - MER20 DNA MER1_type -1 218 1 336 48 0 0 chrX 7670959 7671001 -154928929 + (CA)n Simple_repeat Simple_repeat 1 42 0 336 24 0 0 chrX 7671002 7671043 -154928887 + (GA)n Simple_repeat Simple_repeat 2 42 0 213 284 37 46 chrX 7671378 7671487 -154928443 + MIR SINE MIR 113 220 -42 572 248 103 51 chrX 7671502 7671736 -154928194 - LTR16A1 LTR ERVL 0 457 212 186 42 0 0 chrX 7671911 7671935 -154927995 + MIR SINE MIR 113 136 -72 1038 149 0 6 chrX 7672837 7673012 -154926918 - AluJb SINE Alu -2 310 137 2278 58 20 3 chrX 7673027 7673321 -154926609 - AluSg SINE Alu -11 299 1 310 278 14 47 chrX 7674272 7674501 -154925429 + G-rich Low_complexity Low_complexity 1 221 0 236 29 0 29 chrX 7674682 7674716 -154925214 + (CGG)n Simple_repeat Simple_repeat 2 34 0 41 21 0 0 chrX 7674846 7674894 -154925036 + GC_rich Low_complexity Low_complexity 1 48 0 241 216 29 20 chrX 7674902 7675004 -154924926 + (CGG)n Simple_repeat Simple_repeat 2 104 0 30 83 0 0 chrX 7675050 7675122 -154924808 + GC_rich Low_complexity Low_complexity 1 72 0 26 44 6 0 chrX 7675283 7675372 -154924558 + GC_rich Low_complexity Low_complexity 1 47 0 2159 104 10 0 chrX 7678059 7678356 -154921574 + AluSx SINE Alu 1 300 -12 1845 146 0 31 chrX 7678468 7678790 -154921140 + AluJb SINE Alu 1 312 0 282 56 0 0 chrX 7679701 7679737 -154920193 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 204 40 0 0 chrX 7680477 7680502 -154919428 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1975 100 7 41 chrX 7680504 7680795 -154919135 - AluSx SINE Alu -31 281 1 195 42 0 0 chrX 7681348 7681372 -154918558 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 210 330 70 10 chrX 7681372 7681472 -154918458 - L2 LINE L2 -13 3300 3195 2893 124 62 11 chrX 7681928 7682378 -154917552 + MLT1D LTR MaLR 14 486 -19 287 122 0 0 chrX 7682381 7682422 -154917508 + MLT1D LTR MaLR 464 504 -1 228 284 80 23 chrX 7682499 7682587 -154917343 - MIR SINE MIR -8 254 162 721 122 0 17 chrX 7683101 7683216 -154916714 - FRAM SINE Alu -8 168 56 715 229 37 55 chrX 7683234 7683452 -154916478 - MER20 DNA MER1_type 0 219 6 228 111 0 0 chrX 7683793 7683829 -154916101 + (TG)n Simple_repeat Simple_repeat 1 36 0 1052 168 89 5 chrX 7684433 7684459 -154915471 - L1MB7 LINE L1 -29 6155 6133 2169 107 0 10 chrX 7684459 7684768 -154915162 + AluSx SINE Alu 5 310 -2 1052 168 89 5 chrX 7684768 7684955 -154914975 - L1MB7 LINE L1 -51 6133 5924 327 156 16 16 chrX 7684955 7685019 -154914911 + L1MD2 LINE L1 6282 6345 -14 25 31 0 0 chrX 7685060 7685092 -154914838 + AT_rich Low_complexity Low_complexity 1 32 0 313 167 0 0 chrX 7685122 7685170 -154914760 + L2 LINE L2 3261 3308 -5 919 169 23 68 chrX 7685390 7685609 -154914321 + MER20 DNA MER1_type 1 209 -10 390 280 147 56 chrX 7685604 7686032 -154913898 + MLT1L LTR MaLR 143 609 -6 * 659 151 155 87 chrX 7686295 7686514 -154913416 - L1MD3 LINE L1 -1 7994 7761 1138 197 66 31 chrX 7687078 7687398 -154912532 + L1MB8 LINE L1 5848 6178 0 2064 135 0 0 chrX 7687400 7687704 -154912226 - AluSx SINE Alu -6 306 3 1277 110 5 19 chrX 7688160 7688369 -154911561 + MER6 DNA MER2_type 659 864 -1 471 327 83 5 chrX 7688411 7688616 -154911314 + MIR SINE MIR 23 243 -19 1849 136 26 16 chrX 7688710 7689019 -154910911 + AluJb SINE Alu 1 312 0 368 157 16 15 chrX 7689254 7689339 -154910591 - MER58B DNA MER1_type -15 326 112 904 194 25 0 chrX 7689363 7689523 -154910407 - MER58A DNA MER1_type 0 166 3 2400 66 0 3 chrX 7689543 7689845 -154910085 - AluSg SINE Alu -9 301 1 1635 183 63 7 chrX 7689882 7690182 -154909748 + MER7A DNA MER2_type 32 346 0 1836 120 60 0 chrX 7690427 7690711 -154909219 + AluJo SINE Alu 1 301 -11 437 240 59 44 chrX 7691143 7691347 -154908583 + MER20 DNA MER1_type 2 208 -11 252 266 228 27 chrX 7691638 7691901 -154908029 - L2 LINE L2 -439 2875 2560 2267 83 0 0 chrX 7692188 7692476 -154907454 + AluSx SINE Alu 1 288 -24 25 0 0 0 chrX 7692531 7692556 -154907374 + AT_rich Low_complexity Low_complexity 1 25 0 187 51 0 51 chrX 7694973 7695012 -154904918 + (TA)n Simple_repeat Simple_repeat 2 38 0 1887 127 3 3 chrX 7695012 7695296 -154904634 - AluSx SINE Alu -28 284 1 234 275 100 0 chrX 7695347 7695427 -154904503 - MER5B DNA MER1_type -2 176 89 1362 112 10 10 chrX 7695508 7695713 -154904217 + AluSg/x SINE Alu 96 300 -12 1048 130 6 150 chrX 7695719 7695974 -154903956 - L1MB5 LINE L1 -15 6159 5937 511 172 35 35 chrX 7696141 7696257 -154903673 - L1MB5 LINE L1 -242 5936 5821 1043 156 0 6 chrX 7696259 7696426 -154903504 - AluJb SINE Alu -13 299 134 2569 144 21 88 chrX 7696426 7696707 -154903223 - L1MB5 LINE L1 -346 5828 5607 2457 64 0 0 chrX 7696707 7697018 -154902912 - AluY SINE Alu 0 311 1 2569 144 21 88 chrX 7697018 7697341 -154902589 - L1MB5 LINE L1 -567 5607 5264 2594 39 0 0 chrX 7697407 7697714 -154902216 - AluY SINE Alu -3 308 2 206 118 0 0 chrX 7698935 7698969 -154900961 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 2130 224 79 88 chrX 7699553 7700355 -154899575 - MER21B LTR ERV1 -69 794 1 278 262 83 12 chrX 7700450 7700534 -154899396 + MER5B DNA MER1_type 2 91 -87 396 241 60 9 chrX 7701246 7701362 -154898568 - Charlie8 DNA MER1_type -2152 265 144 645 123 85 0 chrX 7701390 7701496 -154898434 - FLAM_C SINE Alu -18 115 1 233 162 88 15 chrX 7701497 7701565 -154898365 - Charlie8 DNA MER1_type -2263 154 82 1755 161 31 3 chrX 7701945 7702236 -154897694 - AluSx SINE Alu -11 301 3 262 287 10 20 chrX 7702463 7702564 -154897366 - L1ME LINE L1 -343 5778 5679 869 221 40 25 chrX 7702594 7702793 -154897137 - MER20 DNA MER1_type -17 202 1 614 217 35 25 chrX 7702988 7703191 -154896739 - MLT1B LTR MaLR 0 383 173 580 220 112 25 chrX 7703230 7703416 -154896514 - MLT1B LTR MaLR -187 187 1 2414 188 86 57 chrX 7703416 7704244 -154895686 - MLT1B-int LTR MaLR 0 1735 591 222 246 0 0 chrX 7704245 7704359 -154895571 + (TCCA)n Simple_repeat Simple_repeat 2 115 0 2190 107 0 0 chrX 7705861 7706159 -154893771 - AluSq SINE Alu -15 298 1 189 0 0 0 chrX 7707387 7707408 -154892522 + (TTG)n Simple_repeat Simple_repeat 2 22 0 249 307 189 16 chrX 7708185 7708312 -154891618 + MIR SINE MIR 42 190 -72 21 36 0 0 chrX 7708575 7708603 -154891327 + AT_rich Low_complexity Low_complexity 1 28 0 468 266 70 6 chrX 7708992 7709163 -154890767 - L1ME1 LINE L1 -5 6161 5963 198 0 0 0 chrX 7709973 7709995 -154889935 + (GGCTG)n Simple_repeat Simple_repeat 4 25 0 1083 202 80 10 chrX 7710341 7710643 -154889287 + MER33 DNA MER1_type 2 324 0 227 259 17 0 chrX 7711107 7711165 -154888765 - MIR SINE MIR -132 130 72 1191 262 96 20 chrX 7712210 7712618 -154887312 - MLT1J2 LTR MaLR -11 439 1 1648 219 83 23 chrX 7714388 7714822 -154885108 + MLT1D LTR MaLR 1 460 -45 1890 161 15 6 chrX 7715744 7716080 -154883850 - L1MB7 LINE L1 -19 6165 5827 2182 141 78 15 chrX 7716080 7716476 -154883454 + Tigger2a DNA MER2_type 2 422 -12 1528 150 7 29 chrX 7716476 7716749 -154883181 - L1MB7 LINE L1 -357 5827 5561 238 212 15 0 chrX 7716757 7716823 -154883107 + L1ME4a LINE L1 5711 5777 -344 329 305 65 0 chrX 7717085 7717239 -154882691 + L1ME4a LINE L1 5860 6023 -98 1718 128 0 110 chrX 7717972 7718300 -154881630 + AluJb SINE Alu 5 296 -6 361 278 93 20 chrX 7718904 7719055 -154880875 - Tigger8 DNA MER2_type -270 396 235 2105 115 0 3 chrX 7719942 7720247 -154879683 - AluSx SINE Alu -8 304 1 805 69 0 0 chrX 7720600 7720701 -154879229 + HY3 scRNA scRNA 1 101 0 1615 164 34 10 chrX 7721008 7721306 -154878624 - AluJo SINE Alu -7 305 1 193 182 23 23 chrX 7721316 7721360 -154878570 + MIR SINE MIR 182 225 -37 270 0 0 0 chrX 7723339 7723369 -154876561 + (TG)n Simple_repeat Simple_repeat 2 31 0 960 220 28 5 chrX 7723441 7723655 -154876275 + MER20 DNA MER1_type 1 219 0 342 0 0 0 chrX 7724696 7724734 -154875196 + (TG)n Simple_repeat Simple_repeat 2 39 0 305 113 38 0 chrX 7724735 7724788 -154875142 - L1MB4 LINE L1 -14 6166 6112 1791 194 22 20 chrX 7724788 7725176 -154874754 - L1MB5 LINE L1 -9 6165 5762 445 299 128 6 chrX 7727041 7727205 -154872725 - L2 LINE L2 -3 3310 3127 1357 209 26 7 chrX 7728220 7728527 -154871403 - L1M4 LINE L1 -2449 3697 3385 875 259 49 0 chrX 7728534 7728739 -154871191 - MER58A DNA MER1_type -5 219 5 1957 220 101 11 chrX 7728743 7729352 -154870578 - L1M4 LINE L1 -2756 3390 2722 2153 89 0 26 chrX 7729352 7729656 -154870274 - AluSx SINE Alu -16 296 1 1957 220 101 11 chrX 7729656 7729670 -154870260 - L1M4 LINE L1 -3424 2722 2711 294 253 13 0 chrX 7729788 7729867 -154870063 - MER116 DNA Mariner 0 80 1 847 157 0 15 chrX 7730038 7730172 -154869758 + FLAM_C SINE Alu 1 132 -1 306 359 10 0 chrX 7731301 7731404 -154868526 - MIR SINE MIR -111 151 48 216 0 49 49 chrX 7731707 7731748 -154868182 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2059 87 11 0 chrX 7731750 7732026 -154867904 - AluSc SINE Alu -30 279 1 215 267 33 0 chrX 7732653 7732713 -154867217 + L3 LINE CR1 1471 1532 -45 966 215 47 19 chrX 7732718 7732932 -154866998 + MER58A DNA MER1_type 5 224 0 484 224 191 0 chrX 7732943 7733090 -154866840 - MER5B DNA MER1_type -3 175 1 1961 157 0 0 chrX 7733373 7733685 -154866245 - AluJb SINE Alu 0 312 1 2027 119 3 3 chrX 7734957 7735252 -154864678 + AluSx SINE Alu 1 295 -17 27 29 0 0 chrX 7735353 7735387 -154864543 + AT_rich Low_complexity Low_complexity 1 34 0 299 221 90 62 chrX 7735553 7735698 -154864232 - MLT1L LTR MaLR -2 613 465 2278 80 0 3 chrX 7735918 7736217 -154863713 - AluSc SINE Alu -11 298 1 227 263 71 0 chrX 7737670 7737769 -154862161 - L1ME4a LINE L1 -43 6078 5973 338 291 64 35 chrX 7738584 7738756 -154861174 - MER5A DNA MER1_type 0 189 13 458 214 45 0 chrX 7739424 7739536 -154860394 - MER3 DNA MER1_type -70 139 70 1579 79 0 0 chrX 7739632 7739834 -154860096 + AluSx SINE Alu 1 202 -110 1030 117 0 6 chrX 7739834 7739997 -154859933 + AluSg/x SINE Alu 150 311 -1 624 216 9 0 chrX 7740013 7740129 -154859801 - MER20 DNA MER1_type -102 117 1 340 191 44 15 chrX 7740130 7740198 -154859732 - MER3 DNA MER1_type -133 76 7 1533 199 87 9 chrX 7740462 7740809 -154859121 - MLT1A2 LTR MaLR 0 374 1 2133 106 3 0 chrX 7741129 7741430 -154858500 - AluSq SINE Alu -11 302 1 2172 104 13 7 chrX 7741813 7742120 -154857810 - AluSx SINE Alu -3 309 1 491 248 103 25 chrX 7743654 7743896 -154856034 - L1MC5 LINE L1 -37 7924 7664 888 200 49 42 chrX 7743969 7744254 -154855676 - L1MC5 LINE L1 -426 7535 7249 1127 250 5 24 chrX 7744339 7744446 -154855484 - L1ME LINE L1 -471 5699 5592 1268 155 8 76 chrX 7744446 7744697 -154855233 - MER46A DNA MER2_type -1 235 2 1127 250 5 24 chrX 7744697 7744881 -154855049 - L1ME LINE L1 -578 5592 5409 2243 95 0 7 chrX 7745197 7745503 -154854427 - AluSx SINE Alu -8 304 1 725 280 109 18 chrX 7745913 7746252 -154853678 + L2 LINE L2 2913 3282 -31 270 290 42 3 chrX 7747510 7747609 -154852321 + MIR SINE MIR 43 150 -58 569 255 39 39 chrX 7748963 7749167 -154850763 - MIR SINE MIR -28 234 31 228 163 0 0 chrX 7749525 7749568 -154850362 + GA-rich Low_complexity Low_complexity 2 44 0 198 167 0 0 chrX 7750377 7750413 -154849517 + (CA)n Simple_repeat Simple_repeat 2 37 0 819 93 14 72 chrX 7750439 7750578 -154849352 + MER2 DNA MER2_type 2 132 -213 1784 151 14 0 chrX 7750578 7750862 -154849068 - AluJb SINE Alu -13 299 12 1042 164 99 5 chrX 7750870 7751083 -154848847 - MLT1C LTR MaLR -234 233 1 290 302 129 28 chrX 7751149 7751397 -154848533 - L1MC4a LINE L1 -1756 6052 5780 536 220 10 0 chrX 7751871 7751971 -154847959 + MER5A DNA MER1_type 55 155 -34 1786 149 6 32 chrX 7752580 7752896 -154847034 + AluJo SINE Alu 1 308 -4 548 184 73 112 chrX 7753931 7754164 -154845766 - MER58A DNA MER1_type 0 224 1 1872 221 156 29 chrX 7755318 7755844 -154844086 - MLT1E LTR MaLR 0 593 1 181 221 110 110 chrX 7756049 7756185 -154843745 + L3b LINE CR1 1183 1318 -265 1507 139 82 36 chrX 7756278 7756558 -154843372 + AluJo SINE Alu 1 293 -19 2462 56 0 0 chrX 7757057 7757360 -154842570 - AluY SINE Alu -8 303 1 421 246 27 0 chrX 7759770 7759880 -154840050 + MER20 DNA MER1_type 104 216 -3 275 260 122 8 chrX 7759927 7760050 -154839880 + L2 LINE L2 2791 2927 -387 2068 192 123 9 chrX 7760123 7760570 -154839360 + MLT1D LTR MaLR 8 505 0 309 290 264 39 chrX 7760574 7760884 -154839046 + L2 LINE L2 2934 3313 0 366 259 45 9 chrX 7761964 7762076 -154837854 - L1MC4 LINE L1 -1315 6727 6612 2832 129 33 87 chrX 7763366 7763908 -154836022 - MLT2B2 LTR ERVL 0 515 3 2141 90 0 75 chrX 7764108 7764442 -154835488 - AluSx SINE Alu -3 309 1 300 339 56 17 chrX 7767855 7768035 -154831895 + MER117 DNA MER1_type 4 190 -7 182 182 227 0 chrX 7772910 7772954 -154826976 + MIR SINE MIR 95 148 -114 2502 20 0 23 chrX 7773028 7773327 -154826603 - AluY SINE Alu -19 292 1 486 163 23 0 chrX 7773444 7773530 -154826400 - Charlie1 DNA MER1_type 0 2761 2674 1015 243 50 38 chrX 7773598 7773690 -154826240 - Charlie1 DNA MER1_type -74 2687 2598 1908 152 0 0 chrX 7773690 7773986 -154825944 + AluJb SINE Alu 1 296 -16 1015 243 50 38 chrX 7773986 7774234 -154825696 - Charlie1 DNA MER1_type -163 2598 2343 348 278 0 14 chrX 7774232 7774304 -154825626 - Charlie1 DNA MER1_type -2690 71 1 * 410 188 10 86 chrX 7774625 7774780 -154825150 - MIR SINE MIR -67 141 2 260 258 11 67 chrX 7774921 7775010 -154824920 - L2 LINE L2 0 3313 3230 204 204 37 0 chrX 7775271 7775337 -154824593 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 918 128 0 0 chrX 7775338 7775510 -154824420 + (CCCA)n Simple_repeat Simple_repeat 2 173 0 258 328 51 26 chrX 7776233 7776428 -154823502 - MIR SINE MIR -50 212 13 694 151 227 54 chrX 7777952 7778137 -154821793 + MER20 DNA MER1_type 2 218 -1 308 328 121 23 chrX 7778197 7778371 -154821559 + MIR3 SINE MIR 5 195 -13 1863 178 10 0 chrX 7782651 7782960 -154816970 - AluJo SINE Alu 0 312 1 1076 107 0 0 chrX 7782967 7783098 -154816832 - AluSq/x SINE Alu -181 131 1 2380 106 0 0 chrX 7783139 7783450 -154816480 + AluSx SINE Alu 1 311 -1 302 247 14 0 chrX 7785846 7785919 -154814011 + CT-rich Low_complexity Low_complexity 1 74 0 594 277 33 5 chrX 7786103 7786287 -154813643 + MER53 DNA DNA 1 189 0 2131 107 0 14 chrX 7786700 7786981 -154812949 + AluSx SINE Alu 3 279 -33 315 71 0 0 chrX 7786981 7787023 -154812907 + (CA)n Simple_repeat Simple_repeat 1 42 0 1403 144 156 0 chrX 7787044 7787294 -154812636 - AluJo SINE Alu -13 289 1 611 263 105 27 chrX 7788519 7788783 -154811147 - L1MB8 LINE L1 0 6178 5891 379 278 32 8 chrX 7790337 7790463 -154809467 - L1MC4 LINE L1 -1 8041 7913 1924 125 23 38 chrX 7790721 7791066 -154808864 + L1MB2 LINE L1 5550 5889 -282 268 158 13 145 chrX 7791066 7791142 -154808788 + MER21B LTR ERV1 9 74 -789 812 11 0 0 chrX 7791147 7791236 -154808694 - AluY SINE Alu -45 266 178 1023 161 84 77 chrX 7791278 7791399 -154808531 + L1MB2 LINE L1 5871 5990 -181 4592 133 20 19 chrX 7791399 7791961 -154807969 - LTR39 LTR ERV1 0 783 218 2255 115 0 13 chrX 7791961 7792275 -154807655 - AluSx SINE Alu -2 310 1 4592 133 20 19 chrX 7792275 7792494 -154807436 - LTR39 LTR ERV1 -565 218 1 1023 161 84 77 chrX 7792494 7792670 -154807260 + L1MB2 LINE L1 5990 6170 -1 942 269 72 74 chrX 7792816 7792933 -154806997 - L2 LINE L2 -514 2800 2684 1863 199 35 2 chrX 7792933 7793360 -154806570 - L1MB5 LINE L1 -8 6166 5726 942 269 72 74 chrX 7793360 7793756 -154806174 - L2 LINE L2 -630 2684 2288 417 264 40 40 chrX 7794477 7794651 -154805279 - MER5B DNA MER1_type 0 178 5 236 29 0 29 chrX 7795797 7795831 -154804099 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 531 0 0 0 chrX 7796443 7796502 -154803428 + (TA)n Simple_repeat Simple_repeat 2 60 0 234 0 0 0 chrX 7796502 7796528 -154803402 + (TG)n Simple_repeat Simple_repeat 2 27 0 2316 108 0 0 chrX 7796641 7796938 -154802992 + AluSx SINE Alu 1 297 -15 834 225 14 28 chrX 7796958 7797176 -154802754 - MER20 DNA MER1_type -1 218 4 347 273 166 32 chrX 7797573 7797760 -154802170 - L1ME4a LINE L1 -225 5896 5685 330 309 10 0 chrX 7797800 7797897 -154802033 - L1ME4a LINE L1 -531 5590 5493 243 0 0 0 chrX 7798739 7798766 -154801164 + (A)n Simple_repeat Simple_repeat 1 27 0 2003 149 10 0 chrX 7799025 7799320 -154800610 - AluSx SINE Alu -14 298 1 312 308 77 72 chrX 7799417 7799638 -154800292 - L1ME4a LINE L1 -219 5902 5681 1706 173 33 0 chrX 7799652 7799924 -154800006 - AluJb SINE Alu -31 281 1 329 214 19 48 chrX 7800064 7800167 -154799763 - L1ME3A LINE L1 -184 5986 5887 1702 164 88 6 chrX 7800173 7800515 -154799415 - L1MB5 LINE L1 -6 6168 5799 337 261 0 0 chrX 7800577 7800646 -154799284 - L2 LINE L2 0 3313 3245 1301 200 0 0 chrX 7802893 7803123 -154796807 - AluJo SINE Alu -7 305 76 509 263 167 6 chrX 7803954 7804319 -154795611 - L1MC5 LINE L1 -49 7912 7489 * 3420 169 77 6 chrX 7804298 7805000 -154794930 - L1MB8 LINE L1 0 6178 5427 2248 108 0 0 chrX 7805006 7805292 -154794638 - AluSx SINE Alu -22 290 5 228 324 0 0 chrX 7805397 7805471 -154794459 + (TA)n Simple_repeat Simple_repeat 2 75 0 337 215 75 0 chrX 7805474 7805581 -154794349 - L1MC4a LINE L1 -1834 5974 5860 657 221 0 0 chrX 7805583 7805714 -154794216 + FLAM_A SINE Alu 1 131 -2 1027 243 102 25 chrX 7805738 7806141 -154793789 - MLT1C LTR MaLR -6 451 21 245 136 25 86 chrX 7806163 7806244 -154793686 - MLT1C-int LTR MaLR -1 1370 1295 846 265 82 60 chrX 7806292 7806361 -154793569 - L1MC4a LINE L1 -2021 5787 5721 2427 82 0 0 chrX 7806361 7806653 -154793277 + AluSg SINE Alu 1 292 -18 846 265 82 60 chrX 7806653 7806706 -154793224 - L1MC4a LINE L1 -2087 5721 5671 712 143 15 15 chrX 7806706 7806839 -154793091 - FLAM_C SINE Alu 0 133 1 846 265 82 60 chrX 7806839 7807081 -154792849 - L1MC4a LINE L1 -2137 5671 5414 555 289 91 9 chrX 7807091 7807433 -154792497 - L1MC4a LINE L1 -1378 4768 4399 2024 139 3 10 chrX 7807561 7807856 -154792074 + AluJo SINE Alu 1 293 -19 2369 91 3 0 chrX 7807858 7808155 -154791775 + AluSg SINE Alu 1 298 -12 2508 166 37 68 chrX 7808158 7808476 -154791454 - MER21B LTR ERV1 -254 609 314 1968 55 0 0 chrX 7808476 7808733 -154791197 - L1PA5 LINE L1 -3 6151 5895 2508 166 37 68 chrX 7808733 7808975 -154790955 - MER21B LTR ERV1 -549 314 66 2161 129 7 3 chrX 7809001 7809311 -154790619 + AluSq SINE Alu 3 313 0 210 248 78 39 chrX 7809372 7809501 -154790429 + L2 LINE L2 2912 3045 -227 1600 173 78 30 chrX 7809551 7809922 -154790008 - MLT1B LTR MaLR 0 390 2 246 299 55 37 chrX 7809966 7810130 -154789800 + L2 LINE L2 3106 3272 0 2232 183 40 36 chrX 7810142 7810640 -154789290 - MLT1D LTR MaLR -2 503 4 898 198 46 0 chrX 7810998 7811195 -154788735 + MER3 DNA MER1_type 3 208 -1 344 296 86 49 chrX 7811349 7811511 -154788419 - MER63B DNA MER1_type -268 168 1 225 0 0 0 chrX 7811997 7812022 -154787908 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 437 138 9 207 chrX 7812135 7812229 -154787701 - MER96B DNA MER1_type? 0 417 388 2518 99 0 0 chrX 7812229 7812542 -154787388 + AluSq SINE Alu 1 313 0 437 138 9 207 chrX 7812542 7812664 -154787266 - MER96B DNA MER1_type? -29 388 244 244 279 95 68 chrX 7812943 7813090 -154786840 - MIR SINE MIR -38 224 74 1740 109 29 0 chrX 7813589 7813828 -154786102 + AluSx SINE Alu 46 291 -21 261 136 45 0 chrX 7813828 7813894 -154786036 + (TA)n Simple_repeat Simple_repeat 2 70 0 785 151 65 121 chrX 7814307 7814539 -154785391 - MER20 DNA MER1_type 0 219 1 1071 113 0 0 chrX 7814642 7814783 -154785147 + FRAM SINE Alu 20 160 -16 268 359 34 0 chrX 7814803 7814920 -154785010 + L3b LINE CR1 1254 1374 -209 477 301 62 43 chrX 7815126 7815542 -154784388 - L1ME4a LINE L1 -1 6120 5697 298 325 48 66 chrX 7819222 7819329 -154780601 + MIR3 SINE MIR 45 149 -59 1282 126 14 31 chrX 7819329 7819552 -154780378 - MER20 DNA MER1_type 0 219 1 298 325 48 66 chrX 7819552 7819610 -154780320 + MIR3 SINE MIR 149 207 -1 263 250 100 10 chrX 7819888 7819988 -154779942 + MIR SINE MIR 83 191 -71 285 51 0 0 chrX 7820489 7820528 -154779402 + (TC)n Simple_repeat Simple_repeat 1 39 0 298 288 38 57 chrX 7820760 7821000 -154778930 + L1MC4 LINE L1 7452 7679 -285 1203 246 112 35 chrX 7821072 7821370 -154778560 + MLT1F1 LTR MaLR 68 416 -151 2370 95 0 3 chrX 7821370 7821674 -154778256 - AluSx SINE Alu -9 303 1 1203 246 112 35 chrX 7821674 7821839 -154778091 + MLT1F1 LTR MaLR 416 567 0 1248 192 12 8 chrX 7821943 7822193 -154777737 - Charlie1b DNA MER1_type -268 255 5 321 313 121 6 chrX 7822194 7822360 -154777570 + L1MC4 LINE L1 7858 8042 0 2262 103 7 0 chrX 7822758 7823059 -154776871 - AluSx SINE Alu -9 303 1 1190 178 5 0 chrX 7823111 7823319 -154776611 - MER20 DNA MER1_type 0 219 11 533 281 66 16 chrX 7823495 7823976 -154775954 - L2 LINE L2 -252 3061 2553 238 314 29 0 chrX 7824267 7824369 -154775561 + L2 LINE L2 2873 2977 -336 253 219 0 0 chrX 7824525 7824589 -154775341 + L2 LINE L2 2922 2985 -328 602 234 0 0 chrX 7825499 7825627 -154774303 + MLT1B LTR MaLR 1 128 -262 578 178 0 0 chrX 7825638 7825739 -154774191 + MLT1B LTR MaLR 283 383 -7 209 137 260 0 chrX 7825917 7825990 -154773940 + MIR SINE MIR 47 138 -124 1092 206 50 21 chrX 7826779 7827017 -154772913 + MLT1F LTR MaLR 7 251 -291 720 201 126 0 chrX 7827049 7827223 -154772707 + MLT1F LTR MaLR 343 538 -4 1093 217 96 35 chrX 7827974 7828319 -154771611 - L1ME3A LINE L1 -3 6167 5802 334 250 75 19 chrX 7828328 7828488 -154771442 - L1MDa LINE L1 -4763 1777 1609 25 65 0 0 chrX 7828939 7828985 -154770945 + AT_rich Low_complexity Low_complexity 1 46 0 2454 90 7 0 chrX 7829119 7829429 -154770501 - AluSx SINE Alu 0 312 1 198 351 78 0 chrX 7829653 7829730 -154770200 - L2 LINE L2 -69 3203 3121 28 29 0 0 chrX 7829767 7829802 -154770128 + AT_rich Low_complexity Low_complexity 1 35 0 821 235 11 0 chrX 7829880 7830067 -154769863 + MER5A DNA MER1_type 1 189 0 2267 89 0 20 chrX 7830226 7830529 -154769401 - AluSx SINE Alu -15 297 1 260 243 37 37 chrX 7830542 7830649 -154769281 - L1ME3A LINE L1 -971 5175 5069 644 247 130 53 chrX 7830745 7830933 -154768997 - LTR16C LTR ERVL 0 491 278 3499 168 7 2 chrX 7830933 7831492 -154768438 - MER68 LTR ERV1 0 562 1 644 247 130 53 chrX 7831492 7831550 -154768380 - LTR16C LTR ERVL -213 278 226 278 177 65 16 chrX 7831535 7831597 -154768333 + MER68 LTR ERV1 370 434 -128 * 225 65 0 0 chrX 7831974 7832005 -154767925 + (TG)n Simple_repeat Simple_repeat 1 31 0 215 178 44 0 chrX 7832567 7832612 -154767318 + MER5A DNA MER1_type 63 109 -80 582 256 18 0 chrX 7832664 7832828 -154767102 - MER5B DNA MER1_type -7 171 5 246 207 35 0 chrX 7833020 7833078 -154766852 + MER5A DNA MER1_type 50 109 -80 764 223 31 0 chrX 7833251 7833444 -154766486 - MER20 DNA MER1_type -7 212 14 205 307 67 0 chrX 7833873 7833948 -154765982 - MIR SINE MIR -77 185 106 259 233 58 35 chrX 7834285 7834371 -154765559 - L1ME3A LINE L1 -219 5951 5864 876 118 0 0 chrX 7835198 7835334 -154764596 + (TC)n Simple_repeat Simple_repeat 2 137 0 239 237 0 34 chrX 7835562 7835621 -154764309 + L2 LINE L2 3239 3295 -18 934 228 13 35 chrX 7835635 7835863 -154764067 + MER58A DNA MER1_type 1 223 -1 1396 246 66 22 chrX 7836255 7836369 -154763561 + L1ME3A LINE L1 5694 5801 -369 1656 203 15 12 chrX 7836369 7836709 -154763221 + MER58B DNA MER1_type 1 341 0 1396 246 66 22 chrX 7836709 7837046 -154762884 + L1ME3A LINE L1 5801 6165 -5 3333 146 26 36 chrX 7837065 7837669 -154762261 + L1MB7 LINE L1 5576 6173 -11 213 60 20 40 chrX 7838177 7838227 -154761703 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 1001 266 24 20 chrX 7839092 7839340 -154760590 - MIR SINE MIR -5 257 9 246 247 86 11 chrX 7839447 7839540 -154760390 + L1ME4a LINE L1 5977 6076 -45 828 210 54 114 chrX 7839568 7839842 -154760088 + MLT1G LTR MaLR 11 212 -378 2626 67 3 0 chrX 7839842 7840154 -154759776 + AluSp SINE Alu 1 313 0 828 210 54 114 chrX 7840154 7840333 -154759597 + MLT1G LTR MaLR 212 400 -190 2011 152 16 7 chrX 7840427 7840736 -154759194 + AluJb SINE Alu 1 312 0 227 313 83 28 chrX 7840766 7840910 -154759020 - L2 LINE L2 -187 3085 2934 470 198 78 54 chrX 7841607 7841766 -154758164 - MLT1H LTR MaLR -6 589 382 2360 95 0 0 chrX 7841777 7842073 -154757857 - AluSx SINE Alu -16 296 1 2877 206 64 18 chrX 7843606 7844229 -154755701 - MER82 DNA MER2_type -1 652 1 200 271 0 0 chrX 7844846 7844894 -154755036 + L2 LINE L2 3251 3298 -15 367 353 25 34 chrX 7844945 7845183 -154754747 - L2 LINE L2 -218 3054 2819 1158 190 9 0 chrX 7846078 7846294 -154753636 + MER58A DNA MER1_type 7 224 0 182 323 32 0 chrX 7846298 7846360 -154753570 - L2 LINE L2 -2912 402 339 1747 167 21 7 chrX 7847274 7847561 -154752369 - AluJb SINE Alu -21 291 1 290 237 122 53 chrX 7848720 7848851 -154751079 + MER5B DNA MER1_type 39 178 0 473 124 33 91 chrX 7849328 7849449 -154750481 + L1MA9 LINE L1 5901 6014 -298 1834 234 102 24 chrX 7900136 7900717 -154699213 + MLT1E2 LTR MaLR 1 626 0 318 304 94 7 chrX 7901346 7901484 -154698446 + MIR SINE MIR 95 244 -18 849 146 15 0 chrX 7901937 7902067 -154697863 + FLAM_C SINE Alu 2 133 0 1372 169 92 43 chrX 7903018 7903343 -154696587 + MER58B DNA MER1_type 1 341 0 251 269 0 0 chrX 7903461 7903513 -154696417 + (CA)n Simple_repeat Simple_repeat 1 52 0 2191 70 3 3 chrX 7903640 7903925 -154696005 - AluY SINE Alu 0 311 27 1846 127 29 0 chrX 7904055 7904370 -154695560 - L1MB7 LINE L1 0 6184 5861 242 222 0 0 chrX 7904579 7904624 -154695306 - L2 LINE L2 -2 3270 3226 26 64 0 0 chrX 7904778 7904825 -154695105 + AT_rich Low_complexity Low_complexity 1 47 0 405 291 132 35 chrX 7905338 7905678 -154694252 + L3 LINE CR1 1197 1569 -8 8331 85 5 1 chrX 7906805 7908020 -154691910 - L1P LINE L1 -881 5265 4046 2177 130 3 0 chrX 7908112 7908411 -154691519 + AluJo SINE Alu 1 300 -12 347 327 44 44 chrX 7908489 7908648 -154691282 - L2 LINE L2 -84 3188 3030 423 136 0 12 chrX 7909014 7909095 -154690835 - L1MA5 LINE L1 0 6300 6221 28 71 0 0 chrX 7909127 7909183 -154690747 + AT_rich Low_complexity Low_complexity 1 56 0 411 294 33 50 chrX 7909444 7909624 -154690306 + MIR SINE MIR 78 254 -8 500 303 28 39 chrX 7910647 7910825 -154689105 - MIR3 SINE MIR -17 191 16 997 148 0 0 chrX 7911471 7911620 -154688310 - FAM SINE Alu -35 150 2 308 271 153 0 chrX 7911805 7911923 -154688007 + MLT1J LTR MaLR 327 462 -49 522 229 123 29 chrX 7911993 7912237 -154687693 + HAL1 LINE L1 2241 2507 0 201 74 0 0 chrX 7913872 7913899 -154686031 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 2245 112 0 0 chrX 7914321 7914616 -154685314 - AluSx SINE Alu -17 295 1 644 257 102 0 chrX 7914616 7914803 -154685127 - MIR SINE MIR -44 218 13 249 274 66 47 chrX 7914813 7914919 -154685011 - MIR SINE MIR -138 124 17 201 348 87 43 chrX 7915398 7915651 -154684279 - L2 LINE L2 -9 3263 3000 258 81 0 0 chrX 7916241 7916278 -154683652 + (GGAGAA)n Simple_repeat Simple_repeat 4 40 0 22 56 0 0 chrX 7916705 7916741 -154683189 + AT_rich Low_complexity Low_complexity 1 36 0 1594 153 64 21 chrX 7917523 7917804 -154682126 + AluJb SINE Alu 3 295 -17 2406 82 7 3 chrX 7917807 7918111 -154681819 + AluSp SINE Alu 1 305 -8 436 129 0 24 chrX 7918131 7918216 -154681714 + (GAAAA)n Simple_repeat Simple_repeat 3 85 0 267 339 58 6 chrX 7918229 7918400 -154681530 - MIR SINE MIR -36 226 47 1264 144 22 10 chrX 7919799 7920166 -154679764 - MSTB2 LTR MaLR 0 457 13 1905 203 38 42 chrX 7920573 7921071 -154678859 + MLT1D LTR MaLR 1 496 -9 1116 126 0 18 chrX 7923031 7923239 -154676691 - AluSq SINE Alu 0 326 122 2326 106 0 0 chrX 7923257 7923558 -154676372 - AluSg SINE Alu -9 301 1 444 127 0 0 chrX 7923558 7923629 -154676301 + MSTB2 LTR MaLR 387 457 0 399 281 92 44 chrX 7923991 7924219 -154675711 + L2 LINE L2 3075 3313 0 28 0 0 0 chrX 7924360 7924388 -154675542 + AT_rich Low_complexity Low_complexity 1 28 0 656 136 39 0 chrX 7924388 7924491 -154675439 - U6 snRNA snRNA 0 107 1 1650 241 106 11 chrX 7924872 7925346 -154674584 + LTR40a LTR ERVL 1 519 0 183 231 58 19 chrX 7925588 7925640 -154674290 + L2 LINE L2 3219 3272 0 769 11 0 0 chrX 7926760 7926855 -154673075 + L1MA4A LINE L1 6202 6296 -7 281 198 109 50 chrX 7927134 7927235 -154672695 + MIR SINE MIR 133 239 -23 201 195 0 0 chrX 7928039 7928080 -154671850 + (TA)n Simple_repeat Simple_repeat 1 41 0 2227 98 3 0 chrX 7928080 7928376 -154671554 - AluSx SINE Alu -5 307 11 276 309 34 67 chrX 7928406 7928555 -154671375 + MIR SINE MIR 32 175 -87 347 248 24 24 chrX 7930069 7930194 -154669736 + (TA)n Simple_repeat Simple_repeat 2 126 0 189 0 0 0 chrX 7931623 7931644 -154668286 + (TAA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chrX 7932264 7932289 -154667641 + AT_rich Low_complexity Low_complexity 1 25 0 430 260 164 24 chrX 7935137 7935345 -154664585 - MER112 DNA MER1_type -7 253 17 991 179 36 20 chrX 7935401 7935597 -154664333 + MER58A DNA MER1_type 26 224 0 2063 130 0 33 chrX 7937219 7937520 -154662410 - AluJb SINE Alu -21 291 1 1069 238 5 0 chrX 7938285 7938508 -154661422 + MER58A DNA MER1_type 1 224 0 477 250 64 68 chrX 7938594 7938814 -154661116 - L2 LINE L2 -10 3303 3085 3030 167 4 15 chrX 7938987 7939532 -154660398 - L1MB8 LINE L1 -13 6165 5627 1276 181 115 44 chrX 7939533 7939803 -154660127 - AluJo SINE Alu -23 289 1 354 291 21 43 chrX 7939834 7939975 -154659955 + L2 LINE L2 3176 3313 0 244 297 36 36 chrX 7939999 7940110 -154659820 - L2 LINE L2 0 3313 3203 252 0 0 0 chrX 7940208 7940236 -154659694 + (CA)n Simple_repeat Simple_repeat 2 29 0 329 307 132 19 chrX 7940319 7940871 -154659059 - L2 LINE L2 -187 3085 2485 262 299 90 0 chrX 7941016 7941150 -154658780 + MER117 DNA MER1_type 5 150 -47 258 245 132 9 chrX 7941121 7941227 -154658703 + MER117 DNA MER1_type 39 157 -40 * 398 300 57 4 chrX 7941338 7941568 -154658362 - L2 LINE L2 -1120 2194 1953 1214 206 5 0 chrX 7941575 7941793 -154658137 - MER58A DNA MER1_type -2 222 4 242 267 212 0 chrX 7941871 7942017 -154657913 - L2 LINE L2 -1549 1765 1589 499 264 88 23 chrX 7942329 7942545 -154657385 + MER46C DNA MER2_type 2 231 -107 3947 153 48 7 chrX 7943438 7944163 -154655767 - L1MB7 LINE L1 -1 6183 5429 575 183 80 51 chrX 7945247 7945422 -154654508 - MER5A DNA MER1_type -1 188 9 768 206 65 0 chrX 7946090 7946274 -154653656 - MIR SINE MIR -34 228 33 1923 116 59 33 chrX 7947711 7948014 -154651916 - AluSx SINE Alu -1 311 1 255 184 0 20 chrX 7948022 7948071 -154651859 - FLAM SINE Alu 0 133 86 1441 124 29 5 chrX 7948071 7948280 -154651650 - AluJo SINE Alu -92 220 7 2040 157 7 0 chrX 7948647 7948952 -154650978 - AluJb SINE Alu -5 307 1 1071 172 0 0 chrX 7949790 7949953 -154649977 + FRAM SINE Alu 1 163 -13 2033 128 3 17 chrX 7950038 7950155 -154649775 + AluJo SINE Alu 21 138 -174 2239 120 3 0 chrX 7950155 7950454 -154649476 + AluSx SINE Alu 1 300 -12 2033 128 3 17 chrX 7950454 7950632 -154649298 + AluJo SINE Alu 138 312 0 732 209 35 0 chrX 7951613 7951785 -154648145 + MER5B DNA MER1_type 1 178 0 724 179 8 134 chrX 7952471 7952717 -154647213 - MER58C DNA MER1_type 0 215 1 3026 131 24 24 chrX 7952758 7953155 -154646775 - MER34 LTR ERV1 -26 516 117 2450 87 0 0 chrX 7953155 7953464 -154646466 + AluY SINE Alu 1 309 -2 3026 131 24 24 chrX 7953464 7953570 -154646360 - MER34 LTR ERV1 -424 118 13 2102 129 0 35 chrX 7953571 7953882 -154646048 - AluJb SINE Alu -12 300 1 2303 115 0 3 chrX 7954871 7955184 -154644746 - AluSx SINE Alu 0 312 1 1552 204 8 66 chrX 7955321 7955683 -154644247 - MER58B DNA MER1_type 0 341 1 443 270 75 35 chrX 7956650 7956850 -154643080 - MIR SINE MIR -6 256 49 314 271 115 8 chrX 7956951 7957073 -154642857 - L2 LINE L2 -10 3262 3128 379 142 85 0 chrX 7957250 7957356 -154642574 + CT-rich Low_complexity Low_complexity 3 117 0 1494 179 4 12 chrX 7957364 7957621 -154642309 - AluJo SINE Alu -52 260 6 2572 153 42 0 chrX 7957802 7958252 -154641678 - L1MB5 LINE L1 0 6174 5706 540 217 112 28 chrX 7958274 7958417 -154641513 - L1ME3A LINE L1 -9 6161 6007 35 0 0 0 chrX 7958453 7958488 -154641442 + AT_rich Low_complexity Low_complexity 1 35 0 636 197 8 0 chrX 7958488 7958605 -154641325 - FLAM_C SINE Alu -15 118 1 2168 121 27 0 chrX 7958614 7958911 -154641019 - AluJb SINE Alu -7 305 1 27 0 0 0 chrX 7958920 7958947 -154640983 + AT_rich Low_complexity Low_complexity 1 27 0 2354 115 0 0 chrX 7958947 7959259 -154640671 + AluSx SINE Alu 1 312 0 366 217 24 12 chrX 7960713 7960796 -154639134 - MLT1I LTR MaLR -8 401 318 2339 135 14 3 chrX 7960825 7961187 -154638743 - MER47A DNA MER2_type 0 366 1 386 304 158 0 chrX 7962142 7962300 -154637630 - MER5A DNA MER1_type 0 189 7 226 318 19 28 chrX 7964464 7964571 -154635359 + L3b LINE CR1 1110 1215 -368 656 75 0 0 chrX 7964582 7964662 -154635268 + MADE1 DNA Mariner 1 80 0 198 0 0 0 chrX 7964861 7964883 -154635047 + (TA)n Simple_repeat Simple_repeat 1 22 0 1106 123 0 0 chrX 7965076 7965231 -154634699 - FRAM SINE Alu -24 152 1 1100 191 10 24 chrX 7965299 7965508 -154634422 - MER20 DNA MER1_type -13 206 1 2150 119 10 0 chrX 7965711 7966006 -154633924 - AluSx SINE Alu -14 298 1 264 226 139 29 chrX 7966144 7966281 -154633649 - L1ME4a LINE L1 -2 6119 5968 254 295 71 18 chrX 7966419 7966531 -154633399 - L2 LINE L2 0 3313 3196 295 299 13 0 chrX 7966948 7967025 -154632905 - L2 LINE L2 -7 3265 3188 1470 158 60 32 chrX 7969339 7969623 -154630307 + AluJo SINE Alu 1 292 -20 1145 175 38 0 chrX 7970453 7970664 -154629266 + MER20 DNA MER1_type 1 219 0 833 178 10 56 chrX 7970937 7971134 -154628796 - MER5A DNA MER1_type -1 188 1 468 35 0 0 chrX 7972257 7972315 -154627615 + (TG)n Simple_repeat Simple_repeat 2 59 0 180 0 0 0 chrX 7972550 7972570 -154627360 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 6678 77 34 1 chrX 7972570 7974027 -154625903 - L1PA10 LINE L1 -18 6150 4666 9368 123 8 14 chrX 7974027 7975499 -154624431 + L1P LINE L1 2661 4123 -2023 2113 167 53 7 chrX 7975484 7975897 -154624033 - L1MB7 LINE L1 -28 6156 5725 * 1755 101 57 10 chrX 7975913 7976210 -154623720 - L1MA3 LINE L1 0 6305 5995 206 295 45 62 chrX 7976210 7976322 -154623608 - MIR SINE MIR -63 145 36 1176 154 18 32 chrX 7976824 7977044 -154622886 + MER20 DNA MER1_type 3 219 0 347 121 0 0 chrX 7977289 7977347 -154622583 - L1MA2 LINE L1 0 6304 6247 907 149 0 0 chrX 7977349 7977367 -154622563 - L1MA2 LINE L1 -21 6283 6266 4339 28 0 0 chrX 7977367 7977867 -154622063 - L1PA5 LINE L1 -9 6145 5646 907 149 0 0 chrX 7977867 7977989 -154621941 - L1MA2 LINE L1 -37 6267 6143 * 1086 176 0 5 chrX 7977983 7978193 -154621737 - L1MB7 LINE L1 -755 5391 5183 3565 129 24 18 chrX 7978673 7979270 -154620660 - L1MC2 LINE L1 -38 6306 5707 815 279 131 48 chrX 7979383 7979493 -154620437 - L1MC4 LINE L1 -371 7671 7572 319 137 0 0 chrX 7979493 7979544 -154620386 - L1PA16 LINE L1 -9 6157 6107 815 279 131 48 chrX 7979544 7979955 -154619975 - L1MC4 LINE L1 -470 7572 7082 270 360 54 9 chrX 7980639 7980750 -154619180 + MER91C DNA MER1_type 1 116 -24 592 257 94 18 chrX 7981051 7981399 -154618531 - MLT1J2 LTR MaLR -23 427 24 330 256 169 79 chrX 7982964 7983319 -154616611 - MLT1J LTR MaLR 0 511 125 587 238 331 58 chrX 7986160 7986504 -154613426 - L2 LINE L2 -308 3005 2756 2362 88 0 7 chrX 7986504 7986800 -154613130 + AluSx SINE Alu 2 295 -17 587 238 331 58 chrX 7986800 7986868 -154613062 - L2 LINE L2 -557 2756 2708 2135 139 21 3 chrX 7986868 7987206 -154612724 + MER2 DNA MER2_type 1 344 0 587 238 331 58 chrX 7987206 7987427 -154612503 - L2 LINE L2 -605 2708 2199 2311 121 0 3 chrX 7987486 7987799 -154612131 - AluSx SINE Alu 0 312 1 352 306 25 50 chrX 7987870 7988069 -154611861 + MIR SINE MIR 48 241 -21 1926 141 13 20 chrX 7989547 7989846 -154610084 + AluJo SINE Alu 1 297 -15 232 316 10 41 chrX 7990100 7990198 -154609732 + MER5A DNA MER1_type 10 104 -85 723 146 184 13 chrX 7990484 7990642 -154609288 - MER20 DNA MER1_type -6 213 29 1015 173 8 130 chrX 7991172 7991426 -154608504 + MER58A DNA MER1_type 2 224 0 467 240 55 9 chrX 7991814 7991974 -154607956 - MER5B DNA MER1_type -10 179 1 812 246 11 0 chrX 7992110 7992297 -154607633 + MER5A DNA MER1_type 1 189 0 2220 159 109 17 chrX 7994486 7994952 -154604978 + MER34 LTR ERV1 1 509 -33 520 267 8 8 chrX 7995365 7995496 -154604434 + MIR SINE MIR 20 150 -112 1360 209 118 34 chrX 7995561 7995968 -154603962 + MLT1J1 LTR MaLR 1 441 -5 665 227 101 45 chrX 7996006 7996204 -154603726 - MER63A DNA MER1_type -1 209 1 833 218 122 48 chrX 7996666 7996937 -154602993 - LTR16C LTR ERVL 0 491 201 2187 175 66 84 chrX 7997311 7997694 -154602236 + MLT1D LTR MaLR 1 374 -131 18653 27 3 0 chrX 7997694 8000628 -154599302 - L1PA4 LINE L1 -3 6152 3206 2187 175 66 84 chrX 8000628 8000758 -154599172 + MLT1D LTR MaLR 374 505 0 509 310 41 29 chrX 8001257 8001502 -154598428 - MIR SINE MIR 0 262 15 749 136 27 0 chrX 8002032 8002142 -154597788 + MER20 DNA MER1_type 1 113 -106 1877 206 17 49 chrX 8002142 8002614 -154597316 - MLT1C LTR MaLR 0 467 11 289 183 24 49 chrX 8002600 8002682 -154597248 + MER20 DNA MER1_type 88 167 -52 * 599 207 9 0 chrX 8003129 8003240 -154596690 - MER58 DNA MER1_type 0 2420 2309 353 231 0 0 chrX 8003707 8003772 -154596158 - MER58 DNA MER1_type -321 65 1 243 174 0 0 chrX 8005373 8005427 -154594503 + L1M4c LINE L1 2458 2511 -3871 299 288 25 0 chrX 8005754 8005829 -154594101 - MLT1K LTR MaLR -72 516 440 319 311 67 20 chrX 8005829 8006108 -154593822 - LTR16C LTR ERVL 0 491 175 409 260 133 46 chrX 8006380 8006576 -154593354 - MLT1K LTR MaLR -160 428 216 425 303 161 19 chrX 8006778 8007039 -154592891 + LTR16A LTR ERVL 145 442 -8 1797 84 0 0 chrX 8008351 8008589 -154591341 - L1PA10 LINE L1 -12 6156 5919 3010 114 11 0 chrX 8008589 8009026 -154590904 + L1P LINE L1 3934 4375 -1771 474 65 0 0 chrX 8010465 8010527 -154589403 + (CA)n Simple_repeat Simple_repeat 2 63 0 582 285 75 69 chrX 8010652 8010985 -154588945 + MLT1I LTR MaLR 71 405 -4 324 0 0 0 chrX 8011470 8011506 -154588424 + (CA)n Simple_repeat Simple_repeat 1 36 0 1058 249 198 8 chrX 8011858 8012236 -154587694 + MLT1J2 LTR MaLR 1 450 0 1088 250 106 66 chrX 8012545 8012869 -154587061 + MLT1H1 LTR MaLR 17 347 -208 2313 110 0 3 chrX 8012869 8013169 -154586761 - AluSx SINE Alu -3 309 11 1088 250 106 66 chrX 8013169 8013387 -154586543 + MLT1H1 LTR MaLR 347 555 0 1557 133 0 0 chrX 8013589 8013807 -154586123 - AluSg/x SINE Alu -12 300 83 205 316 18 0 chrX 8014760 8014817 -154585113 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 2010 176 113 0 chrX 8015288 8015668 -154584262 - MSTB LTR MaLR -3 423 1 2274 93 0 17 chrX 8016100 8016402 -154583528 + AluSx SINE Alu 1 297 -15 1574 205 15 82 chrX 8016551 8016942 -154582988 + MLT1A1 LTR MaLR 1 365 0 201 289 31 72 chrX 8017936 8018033 -154581897 + L2 LINE L2 2619 2711 -603 2542 222 42 29 chrX 8018073 8018691 -154581239 + MLT1E2 LTR MaLR 1 626 0 293 265 77 61 chrX 8019350 8019531 -154580399 + HAL1 LINE L1 2319 2502 -5 935 139 0 26 chrX 8021613 8021764 -154578166 + MER6B DNA MER2_type 1 147 -63 349 302 94 6 chrX 8021887 8022046 -154577884 + MIR3 SINE MIR 29 201 -7 1852 177 0 16 chrX 8022138 8022455 -154577475 - AluJb SINE Alu 0 312 1 306 206 137 14 chrX 8022472 8022618 -154577312 + MER113 DNA MER1_type? 4 167 -354 544 235 87 37 chrX 8022764 8022951 -154576979 + L1M2 LINE L1 1608 1995 -4221 349 262 64 40 chrX 8023163 8023365 -154576565 - ERVL LTR ERVL -3315 2449 2243 2224 64 3 3 chrX 8023866 8024149 -154575781 + L1PB1 LINE L1 5862 6144 -7 1931 250 68 46 chrX 8025044 8025691 -154574239 + MER21B LTR ERV1 98 758 -105 1560 146 15 116 chrX 8025853 8026181 -154573749 + AluJb SINE Alu 1 295 -17 1954 154 113 10 chrX 8026696 8027086 -154572844 - MLT1D LTR MaLR 0 505 76 1211 213 47 52 chrX 8027087 8027124 -154572806 - MLT2B2 LTR ERVL 0 515 479 306 0 0 0 chrX 8027124 8027158 -154572772 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 345 47 0 0 chrX 8027157 8027200 -154572730 + (TG)n Simple_repeat Simple_repeat 1 43 0 1211 213 47 52 chrX 8027158 8027505 -154572425 - MLT2B2 LTR ERVL -36 479 175 378 192 13 46 chrX 8027509 8027660 -154572270 + CT-rich Low_complexity Low_complexity 3 148 0 284 306 37 19 chrX 8028865 8028973 -154570957 - MER5A DNA MER1_type -41 148 39 322 306 120 24 chrX 8029135 8029344 -154570586 - MIR SINE MIR -6 256 28 333 253 95 0 chrX 8030063 8030158 -154569772 + LTR33A LTR ERVL 269 372 -151 2437 121 44 22 chrX 8030176 8030588 -154569342 - MSTB LTR MaLR -5 421 1 506 211 99 37 chrX 8030588 8030746 -154569184 + LTR33A LTR ERVL 17 184 -339 240 213 160 11 chrX 8031216 8031310 -154568620 + L2 LINE L2 3206 3313 0 1481 184 178 63 chrX 8032255 8032417 -154567513 - L1MD2 LINE L1 -13 6346 6204 432 0 0 0 chrX 8032417 8032465 -154567465 + (TG)n Simple_repeat Simple_repeat 2 49 0 1481 184 178 63 chrX 8032465 8032780 -154567150 - L1MD2 LINE L1 -155 6204 5814 592 329 47 22 chrX 8033054 8033373 -154566557 - LTR16C LTR ERVL -16 475 149 304 54 0 0 chrX 8033707 8033744 -154566186 - tRNA-Val-GTG tRNA tRNA -39 37 1 31 0 0 0 chrX 8033838 8033869 -154566061 + AT_rich Low_complexity Low_complexity 1 31 0 265 262 107 8 chrX 8034071 8034193 -154565737 + L2 LINE L2 3166 3299 -14 1086 221 74 125 chrX 8034751 8035303 -154564627 - MLT1H1 LTR MaLR 0 555 32 201 121 0 0 chrX 8035494 8035527 -154564403 + (GA)n Simple_repeat Simple_repeat 2 34 0 523 212 126 81 chrX 8035820 8036018 -154563912 + MIR SINE MIR 53 259 -3 344 267 17 25 chrX 8038676 8038796 -154561134 - MIR SINE MIR -9 253 135 2254 156 54 12 chrX 8038810 8039275 -154560655 - L1MB7 LINE L1 -20 6164 5682 2093 143 10 56 chrX 8039294 8039686 -154560244 - MLT1A2 LTR MaLR 0 374 1 291 364 9 9 chrX 8039695 8039805 -154560125 + MIR SINE MIR 5 114 -148 193 245 20 0 chrX 8039938 8039987 -154559943 + L2 LINE L2 3264 3313 0 278 303 285 18 chrX 8040001 8040166 -154559764 + MIR SINE MIR 51 259 -3 1375 137 12 4 chrX 8041281 8041522 -154558408 + L1MB3 LINE L1 5939 6181 -2 245 315 0 0 chrX 8041528 8041617 -154558313 + HsTC2 DNA Tc2 779 867 -1031 335 294 67 73 chrX 8041883 8041961 -154557969 + HsTC2 DNA Tc2 1132 1209 -689 1028 118 10 98 chrX 8041961 8042036 -154557894 + MER5A DNA MER1_type 2 82 -107 2143 118 14 0 chrX 8042036 8042332 -154557598 - AluSx SINE Alu -12 300 1 1028 118 10 98 chrX 8042332 8042459 -154557471 + MER5A DNA MER1_type 82 186 -3 335 294 67 73 chrX 8042459 8042724 -154557206 + HsTC2 DNA Tc2 1209 1649 -249 2030 123 112 29 chrX 8043450 8043833 -154556097 + MSTA LTR MaLR 7 421 -7 253 200 215 0 chrX 8044030 8044095 -154555835 + L2 LINE L2 3235 3313 0 273 247 0 49 chrX 8044136 8044217 -154555713 + MLT1K LTR MaLR 183 259 -329 643 279 73 21 chrX 8045153 8045386 -154554544 + MIR SINE MIR 8 252 -10 212 0 36 0 chrX 8046366 8046394 -154553536 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 267 312 26 0 chrX 8046610 8046687 -154553243 + LTR67 LTR ERVL 116 194 -363 2308 113 0 3 chrX 8046991 8047292 -154552638 - AluSx SINE Alu -12 300 1 391 309 15 15 chrX 8047517 8047653 -154552277 + MIR SINE MIR 123 258 -4 260 286 60 91 chrX 8047670 8047869 -154552061 - L2 LINE L2 -50 3222 3030 3331 119 47 4 chrX 8048018 8048556 -154551374 - MER34B LTR ERV1 -2 563 3 33 66 0 0 chrX 8048700 8048761 -154551169 + AT_rich Low_complexity Low_complexity 1 61 0 2919 193 96 10 chrX 8049023 8049702 -154550228 + Tigger6a DNA MER2_type 217 953 -130 692 168 32 0 chrX 8049709 8049834 -154550096 - L1PB4 LINE L1 -6 6150 6022 * 5724 110 19 8 chrX 8049832 8050108 -154549822 + L1PA14 LINE L1 4315 4586 -1575 2334 78 0 0 chrX 8050108 8050429 -154549501 - AluY SINE Alu 0 321 1 5724 110 19 8 chrX 8050429 8051969 -154547961 + L1PA14 LINE L1 4586 6152 -9 3917 139 15 71 chrX 8051977 8052295 -154547635 - L1PB4 LINE L1 -122 6034 5700 12410 30 12 0 chrX 8052295 8054560 -154545370 - L1PA4 LINE L1 0 6155 3875 3917 139 15 71 chrX 8054560 8055036 -154544894 - L1PB4 LINE L1 -456 5700 5334 2161 104 3 3 chrX 8055036 8055333 -154544597 - AluSg SINE Alu -13 297 1 3917 139 15 71 chrX 8055333 8055817 -154544113 - L1PB4 LINE L1 -822 5334 4824 641 208 14 0 chrX 8055817 8055961 -154543969 + Tigger6a DNA MER2_type 938 1083 0 25 0 0 0 chrX 8057258 8057283 -154542647 + AT_rich Low_complexity Low_complexity 1 25 0 680 301 27 34 chrX 8058165 8058427 -154541503 - MIR SINE MIR 0 262 3 189 195 0 0 chrX 8058846 8058887 -154541043 + GA-rich Low_complexity Low_complexity 3 43 0 770 148 12 24 chrX 8059457 8059626 -154540304 + CT-rich Low_complexity Low_complexity 3 169 0 1898 154 54 153 chrX 8060054 8060611 -154539319 - MLT1D LTR MaLR 0 505 4 2094 129 0 10 chrX 8061123 8061426 -154538504 - AluSx SINE Alu -9 303 4 336 274 39 10 chrX 8061427 8061529 -154538401 - MIR SINE MIR -70 192 88 1827 169 4 0 chrX 8061727 8062006 -154537924 + AluJb SINE Alu 1 280 -32 215 56 56 0 chrX 8062094 8062130 -154537800 + T-rich Low_complexity Low_complexity 2 39 0 324 305 144 11 chrX 8063082 8063269 -154536661 + MIR SINE MIR 1 212 -50 266 245 233 31 chrX 8063412 8063571 -154536359 - MIR3 SINE MIR 0 208 18 241 326 34 0 chrX 8064495 8064584 -154535346 + MLT1K LTR MaLR 159 250 -338 2306 133 24 87 chrX 8064674 8065169 -154534761 + MER31B LTR ERV1 3 466 0 903 113 75 0 chrX 8065172 8065331 -154534599 + LTR42 LTR ERVL 1 171 -324 732 21 0 196 chrX 8065331 8065474 -154534456 - L1PA5 LINE L1 -191 5963 5849 889 26 70 0 chrX 8065474 8065586 -154534344 + L1PA5 LINE L1 6033 6154 0 1960 118 83 3 chrX 8065691 8066030 -154533900 + LTR42 LTR ERVL 130 495 0 314 277 113 19 chrX 8066048 8066207 -154533723 + MLT1K LTR MaLR 402 575 -13 29 28 0 0 chrX 8067113 8067149 -154532781 + AT_rich Low_complexity Low_complexity 1 36 0 794 167 0 0 chrX 8067149 8067269 -154532661 - FLAM_A SINE Alu -13 120 1 947 55 16 0 chrX 8067279 8067406 -154532524 - L1PA4 LINE L1 0 6155 6027 182 326 0 0 chrX 8067725 8067771 -154532159 + L2 LINE L2 3209 3254 -18 2435 123 17 38 chrX 8068311 8068733 -154531197 - L1MC1 LINE L1 -5 6328 5916 551 275 185 16 chrX 8068945 8069566 -154530364 + L1M4 LINE L1 3812 4537 -1609 2194 199 128 0 chrX 8069566 8070064 -154529866 - MLT1F1 LTR MaLR -4 563 2 603 288 109 8 chrX 8070067 8070542 -154529388 + L1M4 LINE L1 4536 5058 -1088 232 262 0 56 chrX 8070977 8071084 -154528846 + L1M4 LINE L1 5086 5186 -960 3941 263 82 31 chrX 8071195 8073313 -154526617 + L1ME3A LINE L1 77 2272 -3943 425 283 88 19 chrX 8073384 8073607 -154526323 + L1ME3A LINE L1 5264 5498 -733 850 288 21 13 chrX 8073652 8074027 -154525903 + L1ME3A LINE L1 5574 5951 -288 1081 194 58 82 chrX 8074059 8074486 -154525444 - LTR37B LTR ERV1 -7 461 45 878 140 11 182 chrX 8074638 8074902 -154525028 + MER20 DNA MER1_type 1 219 0 1917 169 14 0 chrX 8075078 8075374 -154524556 + AluJo SINE Alu 1 300 -12 378 289 94 13 chrX 8076832 8076991 -154522939 + MIR3 SINE MIR 31 202 -6 859 221 156 58 chrX 8077458 8077907 -154522023 - MLT1E LTR MaLR -100 493 1 251 311 76 17 chrX 8077959 8078078 -154521852 - L2 LINE L2 -4 3268 3143 1110 156 18 58 chrX 8078756 8078981 -154520949 - MER20 DNA MER1_type -3 216 1 202 274 0 41 chrX 8079538 8079611 -154520319 + CT-rich Low_complexity Low_complexity 4 73 0 205 378 55 24 chrX 8080545 8080672 -154519258 - L2 LINE L2 -15 3257 3127 2284 107 3 0 chrX 8082926 8083225 -154516705 + AluSx SINE Alu 2 301 -11 3329 106 10 4 chrX 8083244 8083755 -154516175 + L1MA4 LINE L1 5777 6290 -10 852 224 35 39 chrX 8084594 8084880 -154515050 - L1MA9 LINE L1 -38 6274 5990 7550 29 0 0 chrX 8085863 8087266 -154512664 - L1PA4 LINE L1 -8 6147 4744 193 238 0 48 chrX 8087449 8087491 -154512439 + MER5B DNA MER1_type 4 43 -135 793 268 98 0 chrX 8087497 8087773 -154512157 - MLT1I LTR MaLR -6 403 101 221 330 33 0 chrX 8087874 8087965 -154511965 + MER5B DNA MER1_type 84 177 -1 33 0 0 0 chrX 8088048 8088081 -154511849 + AT_rich Low_complexity Low_complexity 1 33 0 422 253 122 46 chrX 8088984 8089221 -154510709 + MLT1K LTR MaLR 326 580 -8 296 367 133 0 chrX 8090030 8090188 -154509742 - MIR3 SINE MIR -23 185 7 199 341 81 24 chrX 8090207 8090330 -154509600 + L2 LINE L2 2568 2697 -617 818 172 18 24 chrX 8090808 8090977 -154508953 + MER20 DNA MER1_type 52 219 0 279 239 14 0 chrX 8092717 8092788 -154507142 + L1ME4a LINE L1 5544 5615 -506 989 43 0 0 chrX 8092788 8092905 -154507025 + AluY SINE Alu 194 310 -1 307 256 88 60 chrX 8092909 8093226 -154506704 + L1ME4a LINE L1 5608 5933 -188 395 285 31 23 chrX 8093488 8093618 -154506312 - MIR SINE MIR -85 177 47 14819 117 37 13 chrX 8093683 8093738 -154506192 + Tigger1 DNA MER2_type 3 55 -2363 315 19 38 19 chrX 8093738 8093791 -154506139 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 14819 117 37 13 chrX 8093791 8096093 -154503837 + Tigger1 DNA MER2_type 55 2418 0 180 0 0 0 chrX 8096702 8096722 -154503208 + (A)n Simple_repeat Simple_repeat 1 20 0 2247 130 0 0 chrX 8096773 8097081 -154502849 - AluSx SINE Alu -4 308 1 1269 258 39 53 chrX 8097402 8097890 -154502040 - LTR16C LTR ERVL -10 481 1 367 281 74 15 chrX 8097995 8098198 -154501732 + L1ME3A LINE L1 5549 5763 -399 1256 308 40 4 chrX 8099509 8100013 -154499917 - L1MC4a LINE L1 -1882 5926 5405 244 246 0 0 chrX 8100414 8100471 -154499459 + (TAA)n Simple_repeat Simple_repeat 1 57 0 247 254 0 15 chrX 8100472 8100539 -154499391 + L1MEd LINE L1 456 521 -5598 288 227 73 92 chrX 8100640 8100913 -154499017 + L1MEd LINE L1 685 952 -5167 336 314 33 71 chrX 8100974 8101184 -154498746 + L1ME3A LINE L1 5967 6168 -2 612 249 74 11 chrX 8101200 8101469 -154498461 + L1MEd LINE L1 965 1250 -4869 227 264 0 0 chrX 8101574 8101646 -154498284 + L1MEd LINE L1 1433 1504 -4625 463 276 101 60 chrX 8102151 8102368 -154497562 + L1MEd LINE L1 2216 2441 -3688 621 229 21 47 chrX 8102855 8103091 -154496839 + L1MC5 LINE L1 7184 7413 -548 3739 244 46 37 chrX 8103291 8104776 -154495154 - L2 LINE L2 -2 3311 1816 443 253 51 56 chrX 8104852 8104916 -154495014 + MLT1L LTR MaLR 90 153 -462 1195 139 8 92 chrX 8104916 8105154 -154494776 + MER20 DNA MER1_type 2 219 0 443 253 51 56 chrX 8105154 8105267 -154494663 + MLT1L LTR MaLR 153 266 -349 852 188 67 58 chrX 8105949 8105999 -154493931 + MER63A DNA MER1_type 1 49 -1639 2082 141 3 0 chrX 8105999 8106290 -154493640 + AluSx SINE Alu 1 292 -20 852 188 67 58 chrX 8106290 8106447 -154493483 + MER63A DNA MER1_type 49 210 0 2847 142 21 19 chrX 8106900 8107385 -154492545 - MER66B LTR ERV1 0 486 1 369 0 0 0 chrX 8107451 8107492 -154492438 + (TG)n Simple_repeat Simple_repeat 1 41 0 394 284 0 18 chrX 8107872 8107981 -154491949 + MER81 DNA DNA 8 114 0 433 238 56 134 chrX 8107998 8108498 -154491432 + LTR67 LTR ERVL 95 555 -2 589 122 30 69 chrX 8108936 8108992 -154490938 - L1MD3 LINE L1 0 7995 7938 2197 129 0 7 chrX 8108992 8109301 -154490629 + AluSx SINE Alu 1 307 -5 589 122 30 69 chrX 8109301 8109375 -154490555 - L1MD3 LINE L1 -57 7938 7870 483 200 23 0 chrX 8109875 8109981 -154489949 - MER5A DNA MER1_type -77 112 4 548 227 117 0 chrX 8110152 8110280 -154489650 - MLT1E LTR MaLR -450 143 1 2520 207 65 26 chrX 8111453 8112024 -154487906 - MLT1E LTR MaLR 0 593 1 21 57 0 0 chrX 8112426 8112461 -154487469 + AT_rich Low_complexity Low_complexity 1 35 0 349 274 71 9 chrX 8112758 8112871 -154487059 - MIR SINE MIR -96 166 47 2777 94 8 3 chrX 8113033 8113406 -154486524 + THE1C LTR MaLR 1 375 0 298 319 92 32 chrX 8114313 8114564 -154485366 + MLT1I LTR MaLR 19 284 -125 771 189 31 42 chrX 8114741 8114932 -154484998 - MER5A DNA MER1_type 0 189 1 528 228 13 0 chrX 8115900 8116019 -154483911 + MER5B DNA MER1_type 46 161 -17 359 233 0 150 chrX 8116051 8116113 -154483817 + MER5A DNA MER1_type 14 47 -142 2421 74 3 7 chrX 8116113 8116422 -154483508 + AluSp SINE Alu 1 308 -5 359 233 0 150 chrX 8116422 8116492 -154483438 + MER5A DNA MER1_type 47 126 -63 2167 116 0 0 chrX 8116766 8117109 -154482821 - AluSx SINE Alu 0 312 1 991 156 11 11 chrX 8117249 8117428 -154482502 - MER58A DNA MER1_type 0 224 46 2816 140 81 0 chrX 8117428 8117553 -154482377 + L1MB5 LINE L1 5624 5737 -437 258 105 0 0 chrX 8117553 8117591 -154482339 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 2816 140 81 0 chrX 8117591 8117958 -154481972 + L1MB5 LINE L1 5737 6156 -18 180 0 0 0 chrX 8118744 8118764 -154481166 + (T)n Simple_repeat Simple_repeat 1 20 0 657 261 103 54 chrX 8119350 8119558 -154480372 + MLT1H LTR MaLR 260 485 -64 1201 209 8 4 chrX 8119558 8119793 -154480137 - MER8 DNA MER2_type -2 237 2 657 261 103 54 chrX 8119793 8119845 -154480085 + MLT1H LTR MaLR 485 533 -16 658 269 36 0 chrX 8119897 8120090 -154479840 - MLT1J2 LTR MaLR -245 205 6 23 33 0 0 chrX 8123196 8123226 -154476704 + AT_rich Low_complexity Low_complexity 1 30 0 230 235 296 0 chrX 8123621 8123719 -154476211 - L2 LINE L2 -10 3262 3136 * 291 380 20 0 chrX 8123711 8123811 -154476119 - MIR SINE MIR -77 131 30 23 54 0 0 chrX 8124183 8124220 -154475710 + AT_rich Low_complexity Low_complexity 1 37 0 508 192 253 61 chrX 8124267 8124496 -154475434 - MLT1H LTR MaLR -16 533 261 399 258 115 52 chrX 8124655 8124942 -154474988 - MLT1J LTR MaLR -4 507 203 401 379 67 29 chrX 8125346 8125660 -154474270 + L1MEd LINE L1 533 858 -5261 302 257 134 31 chrX 8125718 8126079 -154473851 + L1MEd LINE L1 926 1184 -4843 417 241 36 72 chrX 8126084 8126250 -154473680 - MLT1J LTR MaLR -325 186 27 440 276 10 0 chrX 8126257 8126355 -154473575 - MIR SINE MIR -160 102 4 822 253 0 36 chrX 8126887 8127108 -154472822 + MER58A DNA MER1_type 12 224 0 22 35 0 0 chrX 8127674 8127703 -154472227 + AT_rich Low_complexity Low_complexity 1 29 0 426 274 113 62 chrX 8129880 8130270 -154469660 + MLT1J2 LTR MaLR 23 432 -18 181 268 18 71 chrX 8130457 8130513 -154469417 + L2 LINE L2 3201 3253 -19 369 0 0 0 chrX 8130645 8130686 -154469244 + (TG)n Simple_repeat Simple_repeat 1 41 0 344 258 124 0 chrX 8130821 8130918 -154469012 - L2 LINE L2 -4 3309 3201 377 258 189 0 chrX 8131077 8131209 -154468721 + MER20 DNA MER1_type 7 163 -56 2622 161 11 30 chrX 8131430 8131896 -154468034 - MSTB2 LTR MaLR 0 457 1 397 153 59 0 chrX 8132041 8132126 -154467804 - MER53 DNA DNA -1 188 99 7463 31 0 2 chrX 8132860 8133996 -154465934 - L1PA4 LINE L1 -9 6146 5011 733 59 20 0 chrX 8133996 8134098 -154465832 + L1PA4 LINE L1 4906 5009 -1137 3471 188 72 38 chrX 8136156 8136980 -154462950 + MER21B LTR ERV1 1 852 -11 563 269 202 29 chrX 8137134 8137510 -154462420 + MLT1H1 LTR MaLR 115 555 0 224 260 60 145 chrX 8137595 8137685 -154462245 + MIR SINE MIR 27 123 -139 21 36 0 0 chrX 8137685 8137713 -154462217 + GC_rich Low_complexity Low_complexity 1 28 0 1305 54 0 18 chrX 8137695 8137861 -154462069 + L1PA4 LINE L1 5993 6155 0 224 260 60 145 chrX 8137713 8137960 -154461970 + MIR SINE MIR 123 209 -53 368 280 8 25 chrX 8139422 8139540 -154460390 + L2 LINE L2 3154 3269 -3 1173 233 5 5 chrX 8140181 8140400 -154459530 - MER58A DNA MER1_type -1 223 5 342 163 0 0 chrX 8140415 8140483 -154459447 + MER5A DNA MER1_type 4 71 -118 1972 147 33 0 chrX 8140491 8140791 -154459139 + AluSx SINE Alu 3 312 0 345 172 0 0 chrX 8140801 8140865 -154459065 + A-rich Low_complexity Low_complexity 5 68 0 187 196 54 36 chrX 8140891 8140947 -154458983 + MER5A DNA MER1_type 125 181 -8 305 210 120 20 chrX 8142153 8142253 -154457677 - MIR SINE MIR -133 129 20 228 325 77 26 chrX 8143470 8143587 -154456343 + L2 LINE L2 3169 3291 -22 939 289 99 46 chrX 8143611 8144196 -154455734 - HAL1 LINE L1 -3 2504 1889 4470 254 60 46 chrX 8144271 8144595 -154455335 - HAL1 LINE L1 -733 1774 1456 2361 86 0 10 chrX 8144595 8144896 -154455034 - AluSc SINE Alu -11 298 1 4470 254 60 46 chrX 8144896 8145810 -154454120 - HAL1 LINE L1 -1051 1456 501 1058 205 38 0 chrX 8145810 8146020 -154453910 - MER20 DNA MER1_type -1 218 1 4470 254 60 46 chrX 8146020 8146528 -154453402 - HAL1 LINE L1 -2006 501 2 623 267 120 4 chrX 8147783 8148008 -154451922 + MLT1I LTR MaLR 157 407 -2 6420 176 31 31 chrX 8148966 8149822 -154450108 - L1MB3 LINE L1 -1 6182 5327 2929 118 29 2 chrX 8149822 8150239 -154449691 - MSTA LTR MaLR 0 428 1 6420 176 31 31 chrX 8150239 8151128 -154448802 - L1MB3 LINE L1 -856 5327 4427 2539 51 3 16 chrX 8151128 8151443 -154448487 - AluY SINE Alu 0 311 1 6420 176 31 31 chrX 8151443 8152032 -154447898 - L1MB3 LINE L1 -1756 4427 3839 209 333 0 0 chrX 8152267 8152324 -154447606 - MIR3 SINE MIR -1 207 151 1872 151 0 31 chrX 8152709 8153026 -154446904 + AluJo SINE Alu 1 307 -5 6148 55 0 11 chrX 8153218 8153976 -154445954 + L1PA5 LINE L1 5361 6110 -44 213 39 0 0 chrX 8153976 8154002 -154445928 + (A)n Simple_repeat Simple_repeat 1 26 0 1918 159 30 0 chrX 8154128 8154429 -154445501 - AluJb SINE Alu -2 310 1 26 0 0 0 chrX 8154429 8154455 -154445475 + AT_rich Low_complexity Low_complexity 1 26 0 302 265 49 20 chrX 8157215 8157317 -154442613 + MIR SINE MIR 21 125 -137 202 216 0 0 chrX 8157606 8157643 -154442287 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 781 211 21 0 chrX 8157858 8157997 -154441933 - MER90 LTR ERV1 0 614 473 2937 163 39 0 chrX 8157997 8158487 -154441443 + MER68 LTR ERV1 1 509 -53 2029 190 47 30 chrX 8158501 8158928 -154441002 - MER90 LTR ERV1 -141 434 1 2467 83 3 3 chrX 8159136 8159449 -154440481 - AluSp SINE Alu 0 313 1 1574 186 19 6 chrX 8160406 8160724 -154439206 + MER33 DNA MER1_type 2 323 -1 984 244 37 9 chrX 8160733 8160950 -154438980 + MER58A DNA MER1_type 1 223 -1 2193 122 0 0 chrX 8160975 8161270 -154438660 - AluSx SINE Alu -17 295 1 21 57 0 0 chrX 8161318 8161353 -154438577 + AT_rich Low_complexity Low_complexity 1 35 0 7766 22 11 0 chrX 8165489 8166381 -154433549 - L1PA4 LINE L1 0 6155 5254 633 278 150 50 chrX 8166678 8166990 -154432940 - MLT1K LTR MaLR -169 419 61 2304 235 72 30 chrX 8166990 8167557 -154432373 + MLT1E LTR MaLR 3 593 0 633 278 150 50 chrX 8167557 8167625 -154432305 - MLT1K LTR MaLR -527 61 1 473 260 7 47 chrX 8167627 8167777 -154432153 - MIR SINE MIR -51 211 68 209 360 22 0 chrX 8168410 8168499 -154431431 + L3 LINE CR1 1482 1572 -5 29 0 0 0 chrX 8168610 8168639 -154431291 + AT_rich Low_complexity Low_complexity 1 29 0 1322 204 14 0 chrX 8169059 8169280 -154430650 + MER58A DNA MER1_type 1 224 0 182 390 21 0 chrX 8169495 8169590 -154430340 - MIR SINE MIR -87 121 25 763 301 64 61 chrX 8169886 8170261 -154429669 + MER115 DNA AcHobo 59 434 -259 1477 198 215 73 chrX 8170500 8171021 -154428909 - MLT1G1 LTR MaLR 0 595 1 297 75 0 0 chrX 8172539 8172579 -154427351 + (TAA)n Simple_repeat Simple_repeat 3 42 0 21 71 0 0 chrX 8172687 8172729 -154427201 + AT_rich Low_complexity Low_complexity 1 42 0 767 229 0 24 chrX 8173079 8173245 -154426685 + MLT1E LTR MaLR 3 164 -429 1868 170 36 36 chrX 8173298 8173663 -154426267 - MLT1A1 LTR MaLR 0 365 1 979 262 59 57 chrX 8173717 8174189 -154425741 - MLT1J1 LTR MaLR -4 442 1 538 313 95 3 chrX 8174233 8174537 -154425393 - ERVL LTR ERVL -1729 4035 3704 404 284 135 59 chrX 8174680 8175042 -154424888 + L2 LINE L2 2218 3313 0 1751 205 15 3 chrX 8175322 8175653 -154424277 - MER58B DNA MER1_type -5 336 2 206 164 194 30 chrX 8176415 8176482 -154423448 - MIR SINE MIR -12 250 173 1284 149 13 53 chrX 8176640 8176868 -154423062 - MER20 DNA MER1_type 0 219 1 342 228 44 9 chrX 8177207 8177321 -154422609 + L1ME4a LINE L1 6001 6118 -3 278 169 15 0 chrX 8179632 8179697 -154420233 + CT-rich Low_complexity Low_complexity 3 68 0 294 350 41 41 chrX 8179698 8179821 -154420109 - L2 LINE L2 -9 3263 3141 260 141 58 16 chrX 8180368 8180489 -154419441 + (TTTAA)n Simple_repeat Simple_repeat 2 127 0 1057 166 37 32 chrX 8180915 8181132 -154418798 + MER20 DNA MER1_type 2 219 0 2932 199 34 27 chrX 8183027 8183614 -154416316 - MLT1E LTR MaLR -2 591 1 2030 78 0 12 chrX 8183747 8184004 -154415926 - AluY SINE Alu -23 288 35 687 189 237 0 chrX 8184166 8184335 -154415595 + MER58C DNA MER1_type 1 209 -6 2262 95 7 3 chrX 8184391 8184686 -154415244 - AluSq SINE Alu -17 296 1 264 307 67 57 chrX 8184699 8184999 -154414931 - L1ME LINE L1 -527 5594 5295 327 332 43 32 chrX 8185261 8185448 -154414482 - L1ME LINE L1 -1338 4808 4620 250 304 92 54 chrX 8185645 8186309 -154413621 - L1ME LINE L1 -2171 3975 3287 538 251 31 18 chrX 8186360 8186377 -154413553 - L1MA10 LINE L1 -1 6333 6317 1515 202 106 0 chrX 8186377 8186699 -154413231 - L1ME1 LINE L1 -6 6160 5805 2101 132 0 0 chrX 8186747 8187043 -154412887 - AluSx SINE Alu -16 296 1 2342 224 94 31 chrX 8187043 8187089 -154412841 - L1M4 LINE L1 -2690 3456 3414 2304 78 0 45 chrX 8187089 8187398 -154412532 - AluSg SINE Alu -15 295 1 2342 224 94 31 chrX 8187398 8188223 -154411707 - L1M4 LINE L1 -2732 3414 2642 1953 157 3 0 chrX 8188223 8188241 -154411689 - AluSx SINE Alu -7 305 289 234 0 0 0 chrX 8188241 8188267 -154411663 + (TCC)n Simple_repeat Simple_repeat 3 28 0 1953 157 3 0 chrX 8188267 8188548 -154411382 - AluSx SINE Alu -23 289 5 2342 224 94 31 chrX 8188548 8188597 -154411333 - L1M4 LINE L1 -3504 2642 2598 1706 201 48 38 chrX 8188597 8188989 -154410941 - MSTD LTR MaLR 0 396 1 2342 224 94 31 chrX 8188989 8189254 -154410676 - L1M4 LINE L1 -3548 2598 2204 25 31 0 0 chrX 8189894 8189926 -154410004 + AT_rich Low_complexity Low_complexity 1 32 0 197 279 188 55 chrX 8190041 8190206 -154409724 - L2 LINE L2 -5 3308 3122 663 299 91 83 chrX 8190372 8191109 -154408821 - L2 LINE L2 -426 2888 2146 255 360 58 58 chrX 8191116 8191377 -154408553 - L2 LINE L2 -1343 1971 1711 1019 211 9 47 chrX 8192351 8192583 -154407347 + MER58A DNA MER1_type 2 224 0 312 91 0 0 chrX 8192627 8192671 -154407259 + (A)n Simple_repeat Simple_repeat 1 44 0 542 211 111 6 chrX 8192900 8193071 -154406859 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chrX 8193763 8193784 -154406146 + AT_rich Low_complexity Low_complexity 1 21 0 917 204 28 9 chrX 8193921 8194132 -154405798 - MER20 DNA MER1_type -4 215 1 780 185 99 6 chrX 8194615 8194777 -154405153 - MER45A DNA AcHobo -1 177 1 997 181 34 15 chrX 8198012 8198216 -154401714 + MER3 DNA MER1_type 1 208 -1 295 271 172 0 chrX 8198358 8198480 -154401450 + MIR SINE MIR 117 259 -3 188 315 0 37 chrX 8198489 8198543 -154401387 - MIR SINE MIR -164 98 47 241 150 0 0 chrX 8199184 8199224 -154400706 + MLT2E LTR ERVL 45 84 -544 2116 100 61 50 chrX 8199522 8199882 -154400048 + THE1B LTR MaLR 1 364 0 697 252 78 18 chrX 8201498 8201521 -154398409 + MIR SINE MIR 2 22 -240 1134 219 0 0 chrX 8201521 8201745 -154398185 + MER58A DNA MER1_type 1 224 0 697 252 78 18 chrX 8201745 8201939 -154397991 + MIR SINE MIR 22 232 -30 185 333 18 0 chrX 8201912 8201969 -154397961 + L2 LINE L2 3251 3308 -5 * 1155 199 4 18 chrX 8202317 8202543 -154397387 - MER58A DNA MER1_type -1 223 1 251 136 12 136 chrX 8202641 8202722 -154397208 + MLT1H LTR MaLR 479 549 0 986 217 17 43 chrX 8204249 8204479 -154395451 - MER58A DNA MER1_type 0 224 1 2087 145 3 0 chrX 8204519 8204830 -154395100 + AluSx SINE Alu 1 312 0 416 307 99 40 chrX 8205464 8205874 -154394056 + L2 LINE L2 2573 2994 -278 208 333 14 0 chrX 8206058 8206127 -154393803 + L2 LINE L2 3244 3313 0 1378 156 15 0 chrX 8206328 8206591 -154393339 + L1MD3 LINE L1 7729 7995 0 639 185 31 87 chrX 8206991 8207186 -154392744 - MER20 DNA MER1_type -33 186 3 520 231 93 56 chrX 8207952 8208168 -154391762 + MLT1H LTR MaLR 26 249 -300 243 88 0 0 chrX 8209047 8209081 -154390849 + (TA)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chrX 8209102 8209131 -154390799 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrX 8211143 8211166 -154388764 + AT_rich Low_complexity Low_complexity 1 23 0 449 273 134 21 chrX 8211610 8211804 -154388126 - MIR SINE MIR 0 262 47 248 316 86 29 chrX 8212553 8212727 -154387203 + MLT1H LTR MaLR 220 403 -146 2072 129 9 31 chrX 8212866 8213151 -154386779 + AluSx SINE Alu 1 291 -21 252 0 0 0 chrX 8213151 8213179 -154386751 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 438 20 0 0 chrX 8213178 8213229 -154386701 + (CA)n Simple_repeat Simple_repeat 2 52 0 2072 129 9 31 chrX 8213179 8213261 -154386669 + AluSx SINE Alu 291 311 -1 1944 178 140 88 chrX 8213298 8213899 -154386031 + MLT1E1 LTR MaLR 17 648 -6 1163 194 9 0 chrX 8214433 8214649 -154385281 - MER20 DNA MER1_type -1 218 1 842 271 25 60 chrX 8214810 8215213 -154384717 + L1MC4a LINE L1 5524 5912 -1896 262 340 120 5 chrX 8215517 8215708 -154384222 + L2 LINE L2 2608 2820 -494 1210 148 5 49 chrX 8217035 8217258 -154382672 - AluJb SINE Alu -11 301 89 1068 227 28 0 chrX 8218147 8218363 -154381567 - MER58A DNA MER1_type -2 222 1 1217 169 47 0 chrX 8218849 8219062 -154380868 + MER58A DNA MER1_type 2 224 0 515 278 93 49 chrX 8220549 8220937 -154378993 + MLT1L LTR MaLR 200 604 -11 907 174 82 31 chrX 8221013 8221209 -154378721 - MER3 DNA MER1_type 0 209 4 182 31 0 62 chrX 8221854 8221886 -154378044 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chrX 8221904 8221924 -154378006 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 262 333 145 0 chrX 8222065 8222182 -154377748 + MIR SINE MIR 55 188 -74 211 295 129 65 chrX 8223689 8223828 -154376102 - MIR3 SINE MIR -16 192 45 2173 151 15 15 chrX 8223960 8224310 -154375620 + L1MB5 LINE L1 5777 6129 -45 762 142 0 55 chrX 8224310 8224437 -154375493 - FLAM_C SINE Alu -13 120 1 2173 151 15 15 chrX 8224437 8224484 -154375446 + L1MB5 LINE L1 6128 6174 0 333 311 33 0 chrX 8226301 8226423 -154373507 - MIR SINE MIR -6 256 131 207 100 0 0 chrX 8226429 8226459 -154373471 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 26 0 0 0 chrX 8227133 8227159 -154372771 + AT_rich Low_complexity Low_complexity 1 26 0 4994 81 21 11 chrX 8227172 8227888 -154372042 - L1MA1 LINE L1 -7 6295 5573 318 297 0 0 chrX 8227916 8227990 -154371940 - MIR SINE MIR -111 97 24 198 196 22 22 chrX 8228893 8228939 -154370991 + MIR SINE MIR 211 256 -6 893 210 15 25 chrX 8229008 8229208 -154370722 + MER58A DNA MER1_type 27 224 0 2386 85 0 19 chrX 8229392 8229709 -154370221 - AluSx SINE Alu -1 311 1 423 247 82 29 chrX 8232777 8232947 -154366983 - MER112 DNA MER1_type -65 195 17 961 188 34 19 chrX 8232992 8233199 -154366731 + MER58A DNA MER1_type 15 224 0 2040 130 0 33 chrX 8234822 8235121 -154364809 - AluJb SINE Alu -21 291 3 309 306 36 0 chrX 8235330 8235441 -154364489 - L1ME1 LINE L1 -303 5863 5749 3755 209 32 43 chrX 8235441 8235946 -154363984 - L1ME1 LINE L1 -8 6394 5885 2009 139 3 7 chrX 8235946 8236247 -154363683 - AluJb SINE Alu -12 300 1 3755 209 32 43 chrX 8236247 8236556 -154363374 - L1ME1 LINE L1 -517 5885 5574 3223 69 30 7 chrX 8236556 8236990 -154362940 + MLT2A1 LTR ERVL 1 444 0 3755 209 32 43 chrX 8236990 8237660 -154362270 - L1ME1 LINE L1 -828 5574 4936 2483 64 0 0 chrX 8237660 8237958 -154361972 - AluY SINE Alu -13 298 1 3755 209 32 43 chrX 8237958 8238354 -154361576 - L1ME1 LINE L1 -1466 4936 4537 570 286 127 71 chrX 8238438 8238928 -154361002 - L1ME1 LINE L1 -2249 4133 3617 706 244 28 28 chrX 8239053 8239229 -154360701 - MER58C DNA MER1_type -1 214 39 809 141 0 0 chrX 8239396 8239512 -154360418 - FLAM_C SINE Alu -29 114 1 316 260 50 72 chrX 8239984 8240165 -154359765 - L1ME1 LINE L1 -5298 1086 910 2354 188 71 29 chrX 8241007 8241486 -154358444 + MLT1D LTR MaLR 5 503 -2 29 0 0 0 chrX 8241535 8241564 -154358366 + AT_rich Low_complexity Low_complexity 1 29 0 1042 171 59 18 chrX 8241568 8241790 -154358140 + L1MA7 LINE L1 6061 6291 0 2012 146 6 19 chrX 8242449 8242765 -154357165 + AluJb SINE Alu 1 312 0 491 318 42 5 chrX 8243789 8243978 -154355952 - MER117 DNA MER1_type 0 197 2 2258 145 75 6 chrX 8245246 8245697 -154354233 + MER31A LTR ERV1 1 661 0 554 213 0 39 chrX 8245774 8245901 -154354029 + L2 LINE L2 3192 3313 0 1730 147 0 52 chrX 8246071 8246377 -154353553 - AluJb SINE Alu -22 290 1 4468 186 34 17 chrX 8246387 8247714 -154352216 - L1MB7 LINE L1 0 6184 4831 207 309 14 72 chrX 8247849 8247988 -154351942 + MIR SINE MIR 85 215 -47 1908 81 0 0 chrX 8248992 8249227 -154350703 + AluSc SINE Alu 1 235 -74 236 260 52 26 chrX 8250434 8250511 -154349419 + MER91C DNA MER1_type 26 104 -36 382 305 19 32 chrX 8252066 8252220 -154347710 + MIR SINE MIR 13 164 -98 447 198 9 28 chrX 8252223 8252329 -154347601 + MER20 DNA MER1_type 116 219 0 305 259 12 0 chrX 8252334 8252415 -154347515 + MIR SINE MIR 170 251 -11 1236 178 41 18 chrX 8252712 8252931 -154346999 - MER58A DNA MER1_type 0 224 1 230 118 0 0 chrX 8253049 8253083 -154346847 + L2 LINE L2 3268 3301 -12 704 256 154 28 chrX 8254266 8254590 -154345340 - LTR16C LTR ERVL -15 476 112 204 286 0 18 chrX 8255095 8255151 -154344779 + CT-rich Low_complexity Low_complexity 3 57 0 227 250 0 0 chrX 8256042 8256090 -154343840 - L2 LINE L2 -19 3294 3247 779 158 20 43 chrX 8256194 8256479 -154343451 + MER33 DNA MER1_type 1 355 -8 1349 176 52 94 chrX 8257724 8258105 -154341825 - MSTB LTR MaLR -43 383 19 201 363 0 55 chrX 8258152 8258334 -154341596 - L2 LINE L2 -184 3088 2917 1536 218 78 51 chrX 8258554 8258638 -154341292 + MLT1C LTR MaLR 6 86 -381 1916 138 20 10 chrX 8258638 8258934 -154340996 - AluJb SINE Alu -13 299 1 1536 218 78 51 chrX 8258934 8259299 -154340631 + MLT1C LTR MaLR 86 467 0 2426 62 0 0 chrX 8259304 8259593 -154340337 - AluY SINE Alu -22 289 1 1908 178 12 3 chrX 8260522 8260854 -154339076 - MER2 DNA MER2_type -9 336 2 180 0 0 0 chrX 8261186 8261206 -154338724 + (A)n Simple_repeat Simple_repeat 1 20 0 2282 106 0 0 chrX 8261990 8262292 -154337638 - AluSx SINE Alu -10 302 1 582 54 0 0 chrX 8262680 8262754 -154337176 + (TC)n Simple_repeat Simple_repeat 1 74 0 1659 90 40 5 chrX 8264766 8264988 -154334942 + MER30 DNA MER1_type 1 230 0 204 229 0 21 chrX 8264996 8265044 -154334886 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 257 270 0 0 chrX 8265047 8265110 -154334820 - L2 LINE L2 -5 3308 3246 189 0 0 0 chrX 8266757 8266778 -154333152 + (CAA)n Simple_repeat Simple_repeat 1 21 0 332 262 85 38 chrX 8267745 8267901 -154332029 + MIR SINE MIR 21 192 -69 649 271 144 30 chrX 8268056 8268417 -154331513 + LTR16C LTR ERVL 80 481 -10 257 219 49 12 chrX 8270161 8270243 -154329687 - MER117 DNA MER1_type -76 121 37 885 120 0 8 chrX 8270253 8270378 -154329552 + FLAM_C SINE Alu 1 124 -19 28 0 0 0 chrX 8270379 8270407 -154329523 + AT_rich Low_complexity Low_complexity 1 28 0 884 190 0 12 chrX 8270446 8270609 -154329321 + FRAM SINE Alu 12 172 -4 731 225 12 47 chrX 8270734 8270816 -154329114 + MER58 DNA MER1_type 1 84 -2336 2363 77 0 13 chrX 8270816 8271116 -154328814 - AluSp SINE Alu -17 296 1 731 225 12 47 chrX 8271116 8271277 -154328653 + MER58 DNA MER1_type 84 275 -2145 261 180 0 20 chrX 8271259 8271309 -154328621 + MER58 DNA MER1_type 2356 2404 -16 * 697 0 22 11 chrX 8271353 8271442 -154328488 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 480 245 113 0 chrX 8272234 8272393 -154327537 - MER5B DNA MER1_type -1 177 1 1962 131 10 16 chrX 8273055 8273367 -154326563 + AluJo SINE Alu 1 310 -2 315 259 47 12 chrX 8273782 8273867 -154326063 + MER5A DNA MER1_type 1 88 -101 207 0 0 0 chrX 8275077 8275100 -154324830 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1990 133 0 3 chrX 8275103 8275388 -154324542 - AluJb SINE Alu -28 284 1 785 192 110 11 chrX 8276552 8276734 -154323196 - L1ME2 LINE L1 -2 6162 5963 2301 100 0 3 chrX 8276904 8277214 -154322716 + AluSg SINE Alu 1 309 -1 2057 130 0 3 chrX 8277318 8277618 -154322312 + AluSx SINE Alu 1 299 -13 1487 189 0 34 chrX 8277746 8278043 -154321887 - AluJo SINE Alu -25 287 1 1970 125 125 3 chrX 8278070 8278390 -154321540 - MER46B DNA MER2_type 0 236 3 538 273 107 19 chrX 8280581 8280786 -154319144 - MIR SINE MIR -4 258 36 1531 140 8 51 chrX 8280802 8281141 -154318789 + L1MA5 LINE L1 5655 5970 -321 2456 161 12 5 chrX 8281153 8281557 -154318373 + L1MA6 LINE L1 5894 6300 0 931 192 147 49 chrX 8282125 8282391 -154317539 - MER33 DNA MER1_type -23 301 10 1038 233 18 22 chrX 8282398 8282621 -154317309 - MER58A DNA MER1_type 0 224 3 484 150 183 5 chrX 8282882 8283004 -154316926 + MIR SINE MIR 4 144 -64 191 323 55 16 chrX 8283551 8283678 -154316252 + L2 LINE L2 2835 2966 -306 1902 56 56 0 chrX 8284647 8284917 -154315013 - Harlequin LTR ERV1 -4628 2268 1984 * 6967 66 94 21 chrX 8284907 8285895 -154314035 - Harlequin LTR ERV1 -5555 1341 282 300 135 0 39 chrX 8285896 8285948 -154313982 - Harlequin LTR ERV1 -7509 304 255 * 744 134 0 52 chrX 8285936 8286070 -154313860 - Harlequin LTR ERV1 -7432 381 255 * 2862 80 10 8 chrX 8286041 8286439 -154313491 - Harlequin LTR ERV1 -6497 399 1 1790 194 32 24 chrX 8286439 8286815 -154313115 - LTR2B LTR ERV1 0 490 112 275 248 0 47 chrX 8287303 8287432 -154312498 + MSTB2 LTR MaLR 333 455 -2 2337 107 0 3 chrX 8288098 8288408 -154311522 - AluSx SINE Alu -3 309 1 315 0 0 0 chrX 8288455 8288490 -154311440 + (TG)n Simple_repeat Simple_repeat 2 36 0 492 62 0 0 chrX 8288509 8288573 -154311357 + (GA)n Simple_repeat Simple_repeat 2 65 0 232 338 0 12 chrX 8288622 8288702 -154311228 + L2 LINE L2 2981 3059 -213 1097 126 13 0 chrX 8288779 8288938 -154310992 - AluSg/x SINE Alu -18 294 134 2144 125 0 10 chrX 8288938 8289234 -154310696 - AluSx SINE Alu -19 293 1 228 303 148 8 chrX 8289243 8289365 -154310565 + MIR SINE MIR 124 262 0 182 250 0 24 chrX 8289367 8289451 -154310479 + (CTA)n Simple_repeat Simple_repeat 2 83 0 408 191 0 0 chrX 8290189 8290278 -154309652 + G-rich Low_complexity Low_complexity 1 89 0 439 286 0 41 chrX 8290299 8290446 -154309484 + G-rich Low_complexity Low_complexity 6 146 0 203 324 14 7 chrX 8290587 8290729 -154309201 + (TA)n Simple_repeat Simple_repeat 2 144 0 249 33 0 0 chrX 8291805 8291835 -154308095 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chrX 8292620 8292642 -154307288 + (A)n Simple_repeat Simple_repeat 1 22 0 414 0 0 0 chrX 8292978 8293024 -154306906 + (TG)n Simple_repeat Simple_repeat 2 47 0 323 294 11 11 chrX 8293139 8293231 -154306699 - L3 LINE CR1 -12 1565 1474 183 80 0 0 chrX 8294141 8294166 -154305764 + (TA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chrX 8294486 8294515 -154305415 + (T)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chrX 8294619 8294643 -154305287 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chrX 8295618 8295639 -154304291 + AT_rich Low_complexity Low_complexity 1 21 0 267 374 20 0 chrX 8297001 8297100 -154302830 - L2 LINE L2 -3 3269 3169 1942 142 42 0 chrX 8297657 8297946 -154301984 - AluSx SINE Alu -11 301 1 1133 175 0 0 chrX 8297958 8298141 -154301789 + AluJb SINE Alu 127 309 -3 7695 51 3 0 chrX 8300218 8301127 -154298803 - Harlequin LTR ERV1 -2633 4263 3352 666 96 19 0 chrX 8301126 8301230 -154298700 - Harlequin LTR ERV1 -4322 2574 2469 * 5111 119 11 7 chrX 8301384 8302121 -154297809 + L1PA16 LINE L1 5426 6165 -1 218 274 16 16 chrX 8302291 8302353 -154297577 - MIR SINE MIR -115 147 86 232 258 15 15 chrX 8304178 8304244 -154295686 + MIR SINE MIR 79 144 -118 2176 178 140 88 chrX 8304874 8305475 -154294455 - MLT1E1 LTR MaLR -6 648 17 365 45 0 0 chrX 8305544 8305588 -154294342 + (TG)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chrX 8305594 8305620 -154294310 + (TA)n Simple_repeat Simple_repeat 1 26 0 222 186 31 41 chrX 8305650 8305747 -154294183 + (TTAAA)n Simple_repeat Simple_repeat 3 98 0 * 329 215 23 35 chrX 8305713 8305885 -154294045 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 252 260 35 0 chrX 8305802 8305975 -154293955 + (TTA)n Simple_repeat Simple_repeat 1 179 0 * 22 0 0 0 chrX 8305975 8305997 -154293933 + AT_rich Low_complexity Low_complexity 1 22 0 185 141 64 0 chrX 8305997 8306075 -154293855 + (TA)n Simple_repeat Simple_repeat 1 83 0 70 13 0 0 chrX 8306080 8306157 -154293773 + AT_rich Low_complexity Low_complexity 1 77 0 182 277 36 36 chrX 8306451 8306534 -154293396 + L2 LINE L2 3184 3266 -6 207 194 0 0 chrX 8308024 8308060 -154291870 + (CATA)n Simple_repeat Simple_repeat 4 39 0 25 0 0 0 chrX 8308060 8308085 -154291845 + AT_rich Low_complexity Low_complexity 1 25 0 3377 73 25 2 chrX 8308564 8309002 -154290928 - L1PA8 LINE L1 0 6172 5725 39 38 0 0 chrX 8309256 8309309 -154290621 + AT_rich Low_complexity Low_complexity 1 53 0 1026 197 0 0 chrX 8309309 8309487 -154290443 - AluJ SINE Alu -10 302 125 405 118 47 24 chrX 8309487 8309614 -154290316 + (TA)n Simple_repeat Simple_repeat 2 131 0 951 107 0 0 chrX 8309615 8309737 -154290193 - AluJ SINE Alu -190 122 1 1041 178 53 14 chrX 8310014 8310222 -154289708 - MLT1A1 LTR MaLR -149 216 1 980 251 66 11 chrX 8310298 8310585 -154289345 + LTR16A1 LTR ERVL 155 457 0 2023 122 0 11 chrX 8310673 8311006 -154288924 + AluSx SINE Alu 1 330 0 621 110 0 22 chrX 8311051 8311142 -154288788 + AluJ/FRAM SINE Alu 216 304 -8 2860 156 52 20 chrX 8313935 8314474 -154285456 - L1MD2 LINE L1 -376 5983 5428 188 220 143 22 chrX 8315236 8315302 -154284628 - L2 LINE L2 -314 2958 2877 1485 218 107 22 chrX 8315302 8315429 -154284501 + MSTD LTR MaLR 3 118 -278 1658 171 3 44 chrX 8315429 8315744 -154284186 + AluJb SINE Alu 1 302 -10 1485 218 107 22 chrX 8315744 8315979 -154283951 + MSTD LTR MaLR 118 396 0 188 220 143 22 chrX 8315979 8316003 -154283927 - L2 LINE L2 -395 2877 2857 200 292 0 0 chrX 8316116 8316181 -154283749 + A-rich Low_complexity Low_complexity 1 65 0 523 263 60 30 chrX 8316193 8316459 -154283471 + L1M4 LINE L1 2128 2401 -3745 206 240 67 96 chrX 8317139 8317243 -154282687 - MIR SINE MIR -63 145 45 216 328 107 16 chrX 8317623 8317745 -154282185 - MIR3 SINE MIR -63 145 13 284 222 0 0 chrX 8318012 8318066 -154281864 - MER94 DNA DNA -79 55 2 698 0 12 0 chrX 8318312 8318394 -154281536 + (CA)n Simple_repeat Simple_repeat 2 84 0 2903 216 63 38 chrX 8319307 8320237 -154279693 - L1M4 LINE L1 -1822 4324 3371 1091 162 66 5 chrX 8320522 8320720 -154279210 - L1MD3 LINE L1 -137 7858 7649 180 0 0 0 chrX 8321621 8321641 -154278289 + (A)n Simple_repeat Simple_repeat 1 20 0 2589 139 71 73 chrX 8323810 8324300 -154275630 - LTR2B LTR ERV1 -1 489 1 1845 147 3 3 chrX 8325201 8325517 -154274413 - AluJb SINE Alu 0 316 1 345 301 0 0 chrX 8325541 8325644 -154274286 - L1ME3 LINE L1 -3 6159 6057 1468 123 16 25 chrX 8325833 8326076 -154273854 - AluJo SINE Alu 0 312 72 2126 113 0 3 chrX 8326889 8327195 -154272735 - AluSx SINE Alu 0 306 2 181 328 134 0 chrX 8327196 8327263 -154272667 - L2 LINE L2 -40 3232 3157 3070 73 20 49 chrX 8327352 8327804 -154272126 + MLT2A1 LTR ERVL 1 439 -5 2653 46 0 0 chrX 8330228 8330533 -154269397 - AluY SINE Alu -6 305 1 207 0 0 0 chrX 8330618 8330641 -154269289 + (TG)n Simple_repeat Simple_repeat 2 24 0 1600 171 4 7 chrX 8330673 8330948 -154268982 - AluJb SINE Alu -30 282 9 1244 224 39 77 chrX 8332199 8332681 -154267249 + LTR37B LTR ERV1 1 464 -4 534 264 42 0 chrX 8334248 8334415 -154265515 - MER104 DNA Tc2 0 180 7 201 354 0 13 chrX 8334764 8334843 -154265087 - L2 LINE L2 -4 3268 3191 293 188 16 16 chrX 8334958 8335022 -154264908 - MER20 DNA MER1_type -155 64 1 1612 135 58 8 chrX 8335277 8335568 -154264362 + AluJo SINE Alu 12 315 0 29 70 0 0 chrX 8335897 8335954 -154263976 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chrX 8336089 8336125 -154263805 + AT_rich Low_complexity Low_complexity 1 36 0 1778 148 7 28 chrX 8337227 8337511 -154262419 + AluJo SINE Alu 10 287 -25 1711 174 51 18 chrX 8338008 8338341 -154261589 - MER2 DNA MER2_type 0 344 1 528 310 61 31 chrX 8339546 8339775 -154260155 - MIR SINE MIR -1 261 26 361 333 75 11 chrX 8340434 8340608 -154259322 + MIR SINE MIR 13 197 -65 1600 249 40 18 chrX 8340645 8341094 -154258836 + L1ME1 LINE L1 5703 6161 -5 218 31 0 31 chrX 8343092 8343124 -154256806 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 399 262 60 30 chrX 8343988 8344187 -154255743 - L1ME2 LINE L1 0 6166 5968 275 320 91 29 chrX 8345202 8345377 -154254553 + MLT1H LTR MaLR 218 403 -146 310 239 6 80 chrX 8345526 8345689 -154254241 + AluJb SINE Alu 1 151 -151 502 250 22 15 chrX 8346677 8346813 -154253117 + MIR SINE MIR 16 152 -110 747 149 9 0 chrX 8347023 8347137 -154252793 + FLAM_C SINE Alu 1 115 -18 213 312 134 55 chrX 8347655 8347857 -154252073 + L2 LINE L2 3039 3256 -16 270 81 0 0 chrX 8348016 8348053 -154251877 + (GGA)n Simple_repeat Simple_repeat 3 39 0 407 213 189 53 chrX 8349820 8350121 -154249809 - L1ME4a LINE L1 -46 6075 5734 440 272 20 27 chrX 8350517 8350664 -154249266 + MER5A DNA MER1_type 44 189 0 1921 136 3 19 chrX 8351842 8352159 -154247771 + AluSx SINE Alu 1 312 0 779 198 29 12 chrX 8354639 8354811 -154245119 + MER5B DNA MER1_type 4 178 0 183 42 0 0 chrX 8355880 8355904 -154244026 + (TG)n Simple_repeat Simple_repeat 2 25 0 1766 195 29 0 chrX 8355904 8356284 -154243646 - L1M4 LINE L1 -1897 4249 3859 284 250 11 34 chrX 8356964 8357052 -154242878 + AluSq/x SINE Alu 48 133 -170 7204 80 21 14 chrX 8357605 8358615 -154241315 + Harlequin LTR ERV1 4478 5494 -1402 230 312 214 0 chrX 8358807 8358980 -154240950 - L3 LINE CR1 -123 1454 1245 623 284 53 5 chrX 8359057 8359247 -154240683 - MIR SINE MIR -17 245 47 1797 220 27 34 chrX 8359740 8360274 -154239656 + L1MB8 LINE L1 5466 5990 -194 308 290 30 23 chrX 8360392 8360523 -154239407 - L1M4 LINE L1 -6406 136 5 1660 168 17 7 chrX 8360939 8361231 -154238699 + AluJb SINE Alu 1 295 -17 415 304 15 0 chrX 8361786 8361921 -154238009 + L1 LINE L1 3745 3881 -2265 1539 283 29 7 chrX 8361951 8362513 -154237417 - L1M4 LINE L1 -1098 5048 4475 1416 216 47 13 chrX 8362512 8362896 -154237034 + L1 LINE L1 3564 3960 -2186 * 263 221 15 15 chrX 8363104 8363172 -154236758 + L2 LINE L2 2995 3062 -251 1838 157 0 0 chrX 8363202 8363488 -154236442 - AluSx SINE Alu -26 286 1 1778 125 39 4 chrX 8363490 8363771 -154236159 - AluJo SINE Alu -21 291 1 303 239 98 69 chrX 8363814 8363980 -154235950 - MIR3 SINE MIR -5 203 35 249 212 212 0 chrX 8367207 8367273 -154232657 - MIR SINE MIR -150 112 33 794 137 0 68 chrX 8367819 8367965 -154231965 + AluJo SINE Alu 2 137 -175 396 281 67 67 chrX 8367966 8368176 -154231754 - L1MC4a LINE L1 -1812 5996 5787 194 210 32 0 chrX 8368342 8368404 -154231526 + C-rich Low_complexity Low_complexity 5 68 0 237 242 8 17 chrX 8368568 8368688 -154231242 + G-rich Low_complexity Low_complexity 4 122 0 300 188 0 0 chrX 8368827 8368896 -154231034 + G-rich Low_complexity Low_complexity 1 69 0 294 168 37 22 chrX 8369557 8369639 -154230291 + MER53 DNA DNA 1 116 -73 630 243 20 50 chrX 8369956 8370256 -154229674 - AluYa5 SINE Alu -10 291 1 545 124 58 66 chrX 8370256 8370393 -154229537 - L1MB4 LINE L1 -39 6141 6006 333 259 76 76 chrX 8371471 8371656 -154228274 + MER20B DNA MER1_type 5 189 -594 187 336 49 42 chrX 8372355 8372498 -154227432 + L2 LINE L2 2978 3121 -151 595 96 0 21 chrX 8373805 8373899 -154226031 + MER49 LTR ERV1 1 92 -831 426 244 65 32 chrX 8374439 8374562 -154225368 + MIR SINE MIR 16 142 -66 233 324 97 43 chrX 8375676 8375861 -154224069 + L2 LINE L2 2985 3179 -93 222 208 0 0 chrX 8376226 8376274 -154223656 + CT-rich Low_complexity Low_complexity 3 50 0 587 180 49 33 chrX 8377909 8378031 -154221899 - L2 LINE L2 -10 3262 3139 5925 186 33 6 chrX 8378250 8379416 -154220514 + L1P LINE L1 1403 2600 -3546 2124 218 33 22 chrX 8379610 8380069 -154219861 - Harlequin LTR ERV1 -3070 3826 3363 219 258 11 34 chrX 8380104 8380194 -154219736 + CT-rich Low_complexity Low_complexity 1 87 0 237 178 0 0 chrX 8381255 8381300 -154218630 + (CA)n Simple_repeat Simple_repeat 2 46 0 440 265 46 77 chrX 8381488 8381684 -154218246 - MIR SINE MIR -5 257 68 2504 39 0 3 chrX 8381828 8382138 -154217792 - AluY SINE Alu -2 309 1 1635 240 114 23 chrX 8382157 8382720 -154217210 + L1MC4a LINE L1 5326 5939 -1869 297 0 0 0 chrX 8385817 8385850 -154214080 + (TA)n Simple_repeat Simple_repeat 1 33 0 378 94 0 0 chrX 8385850 8385914 -154214016 + (GA)n Simple_repeat Simple_repeat 1 64 0 252 310 69 26 chrX 8386126 8386242 -154213688 - L2 LINE L2 -16 3256 3136 324 309 54 27 chrX 8389288 8389437 -154210493 + MIR SINE MIR 60 212 -50 22 35 0 0 chrX 8392354 8392383 -154207547 + GC_rich Low_complexity Low_complexity 1 29 0 1210 134 31 0 chrX 8393947 8394141 -154205789 - MER20 DNA MER1_type 0 219 20 268 350 56 33 chrX 8394141 8394321 -154205609 + MER5A DNA MER1_type 6 189 0 1189 170 18 22 chrX 8394661 8394884 -154205046 + MLT1A1 LTR MaLR 133 354 -11 1817 148 16 23 chrX 8395076 8395465 -154204465 + AluJb SINE Alu 1 387 0 231 182 0 0 chrX 8395805 8395849 -154204081 - MER116 DNA Mariner -26 54 11 242 323 97 0 chrX 8396250 8396343 -154203587 + MIR SINE MIR 31 132 -76 1575 160 0 26 chrX 8396722 8396990 -154202940 - AluJb SINE Alu -17 295 35 41 58 0 0 chrX 8397124 8397193 -154202737 + AT_rich Low_complexity Low_complexity 1 69 0 1505 160 183 9 chrX 8397202 8397540 -154202390 - MLT2C1 LTR ERVL 0 397 1 27 0 0 0 chrX 8397629 8397656 -154202274 + AT_rich Low_complexity Low_complexity 1 27 0 866 269 69 19 chrX 8397719 8398098 -154201832 + HAL1 LINE L1 1503 1900 -607 261 263 44 18 chrX 8398146 8398260 -154201670 + HAL1 LINE L1 2002 2118 -389 573 284 88 57 chrX 8398276 8398422 -154201508 + MLT1J LTR MaLR 1 141 -370 315 0 0 0 chrX 8398422 8398457 -154201473 + (TTA)n Simple_repeat Simple_repeat 1 35 0 975 161 0 0 chrX 8398458 8398613 -154201317 - FAM SINE Alu -19 156 2 573 284 88 57 chrX 8398613 8398953 -154200977 + MLT1J LTR MaLR 140 504 -7 522 229 123 29 chrX 8398986 8399230 -154200700 + HAL1 LINE L1 2241 2507 0 201 74 0 0 chrX 8400866 8400893 -154199037 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 1903 145 7 10 chrX 8401315 8401611 -154198319 - AluSx SINE Alu -17 295 1 985 244 125 72 chrX 8402187 8403083 -154196847 - L2 LINE L2 -6 3307 2362 328 330 37 0 chrX 8403243 8403352 -154196578 + MIR SINE MIR 2 114 -148 912 230 87 9 chrX 8403391 8403621 -154196309 - MIR SINE MIR 0 262 15 353 187 17 0 chrX 8404385 8404460 -154195470 + MIR SINE MIR 67 143 -65 901 166 12 12 chrX 8404472 8404635 -154195295 - MER5B DNA MER1_type -13 165 3 1031 156 12 0 chrX 8404645 8404812 -154195118 - MER5A DNA MER1_type 0 189 21 1031 174 28 19 chrX 8404826 8405039 -154194891 + MER58 DNA MER1_type 1 215 -2205 276 264 0 0 chrX 8405049 8405102 -154194828 - MER45 DNA AcHobo -125 53 1 1096 233 64 86 chrX 8405148 8405560 -154194370 + MER34 LTR ERV1 1 400 -142 1954 131 0 21 chrX 8405560 8405850 -154194080 - AluJo SINE Alu -14 298 15 1096 233 64 86 chrX 8405850 8405987 -154193943 + MER34 LTR ERV1 400 538 -4 297 0 0 0 chrX 8408896 8408929 -154191001 + (TA)n Simple_repeat Simple_repeat 1 33 0 264 59 0 0 chrX 8408997 8409031 -154190899 + (TG)n Simple_repeat Simple_repeat 1 34 0 1842 101 0 0 chrX 8409523 8409760 -154190170 + AluSg/x SINE Alu 69 305 -5 778 187 18 0 chrX 8409915 8410081 -154189849 + L1MD3 LINE L1 7822 7990 -5 38733 64 12 2 chrX 8410196 8416278 -154183652 + L1PA5 LINE L1 11 6154 0 246 336 53 0 chrX 8417182 8417295 -154182635 + MIR3 SINE MIR 4 122 -86 2346 133 50 0 chrX 8417314 8417698 -154182232 - MER57A LTR ERV1 0 403 1 227 286 31 57 chrX 8418096 8418288 -154181642 + LTR16C LTR ERVL 305 491 0 306 244 12 12 chrX 8420326 8420412 -154179518 + MLT1L LTR MaLR 420 505 -110 525 244 49 44 chrX 8420765 8420970 -154178960 + MLT1J2 LTR MaLR 1 206 -244 245 233 211 0 chrX 8420976 8421109 -154178821 + Zaphod DNA AcHobo 588 748 -3283 326 237 6 0 chrX 8422308 8422400 -154177530 + MER34 LTR ERV1 3 96 -446 1533 204 127 31 chrX 8422460 8422974 -154176956 + LTR48B LTR ERV1 82 644 0 245 276 26 0 chrX 8423005 8423081 -154176849 - L3 LINE CR1 -117 1460 1383 855 284 85 31 chrX 8423085 8423507 -154176423 - MLT1J2 LTR MaLR 0 450 6 605 311 116 19 chrX 8423520 8423736 -154176194 - L3 LINE CR1 -203 1374 1116 1818 169 0 7 chrX 8423736 8424038 -154175892 - AluJb SINE Alu -12 300 1 605 311 116 19 chrX 8424038 8424139 -154175791 - L3 LINE CR1 -461 1116 1026 989 272 106 44 chrX 8424413 8425241 -154174689 + L2 LINE L2 2430 3304 -9 199 255 29 88 chrX 8426450 8426475 -154173455 - L2 LINE L2 -2 3311 3286 2215 119 0 45 chrX 8426475 8426828 -154173102 - MER1B DNA MER1_type 0 337 1 199 255 29 88 chrX 8426828 8426904 -154173026 - L2 LINE L2 -27 3286 3216 535 249 50 50 chrX 8426976 8427177 -154172753 - L2 LINE L2 0 3313 3113 356 254 106 14 chrX 8427212 8427354 -154172576 + HAL1 LINE L1 1643 1797 -710 881 252 95 56 chrX 8427718 8428162 -154171768 + MLT1H LTR MaLR 89 549 0 1577 235 89 25 chrX 8429028 8429466 -154170464 + LTR16C LTR ERVL 26 491 0 324 0 0 0 chrX 8430539 8430575 -154169355 + (A)n Simple_repeat Simple_repeat 1 36 0 461 229 23 0 chrX 8433294 8433425 -154166505 + L1MD2 LINE L1 6196 6329 -30 2398 81 0 3 chrX 8433425 8433722 -154166208 - AluY SINE Alu -14 297 2 2287 101 3 0 chrX 8434133 8434439 -154165491 + AluSp SINE Alu 1 307 -6 248 288 47 88 chrX 8434834 8435004 -154164926 - MIR SINE MIR -70 192 30 1622 160 59 31 chrX 8435219 8435606 -154164324 - L1MB8 LINE L1 0 6178 5781 251 28 28 0 chrX 8435620 8435656 -154164274 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 248 288 47 88 chrX 8435700 8435870 -154164060 + MIR SINE MIR 30 192 -70 2086 124 0 25 chrX 8436265 8436579 -154163351 - AluSq SINE Alu -6 307 2 1486 159 4 0 chrX 8436580 8436832 -154163098 - L1MB8 LINE L1 -392 5786 5534 2133 134 0 0 chrX 8437639 8437938 -154161992 - AluJo SINE Alu -13 299 1 200 233 0 33 chrX 8438188 8438248 -154161682 + GA-rich Low_complexity Low_complexity 4 61 0 183 287 0 111 chrX 8438411 8438519 -154161411 + L3 LINE CR1 681 776 -801 1230 261 69 22 chrX 8438756 8439162 -154160768 + L3b LINE CR1 1102 1526 -57 2899 16 0 0 chrX 8441048 8441366 -154158564 + AluYb8 SINE Alu 1 318 0 186 277 0 0 chrX 8442241 8442288 -154157642 + L2 LINE L2 3264 3310 -3 711 272 100 21 chrX 8443356 8443595 -154156335 + MIR SINE MIR 2 259 -3 2108 139 0 0 chrX 8444055 8444349 -154155581 + AluJb SINE Alu 3 296 -16 1716 149 86 122 chrX 8444360 8444820 -154155110 + MLT1D LTR MaLR 1 441 -64 1714 163 58 4 chrX 8444820 8445096 -154154834 - AluJo SINE Alu -21 291 1 1716 149 86 122 chrX 8445096 8445159 -154154771 + MLT1D LTR MaLR 441 505 0 470 276 70 22 chrX 8445859 8446044 -154153886 + MIR SINE MIR 63 256 -6 251 227 45 0 chrX 8447747 8447835 -154152095 + (TA)n Simple_repeat Simple_repeat 2 93 0 1291 277 109 35 chrX 8450763 8451488 -154148442 + L1MC4a LINE L1 5257 6035 -1773 1016 224 9 9 chrX 8451554 8451777 -154148153 + MER58A DNA MER1_type 1 223 -1 270 282 34 60 chrX 8451892 8452009 -154147921 + MIR SINE MIR 99 212 -50 274 247 14 0 chrX 8452787 8452860 -154147070 + L1ME LINE L1 5589 5662 -459 1529 147 55 22 chrX 8452863 8453187 -154146743 + AluJb SINE Alu 1 333 0 1572 251 109 17 chrX 8453353 8453884 -154146046 - MLT1G1 LTR MaLR -8 587 8 262 146 0 0 chrX 8454009 8454050 -154145880 + L2 LINE L2 3268 3308 -5 895 126 0 16 chrX 8454135 8454262 -154145668 + FLAM_C SINE Alu 2 126 -7 212 122 24 0 chrX 8454426 8454467 -154145463 + T-rich Low_complexity Low_complexity 3 44 0 22 0 0 0 chrX 8454592 8454614 -154145316 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 8454852 8454881 -154145049 + AT_rich Low_complexity Low_complexity 1 29 0 1800 174 16 3 chrX 8455374 8455678 -154144252 + AluJo SINE Alu 1 308 -4 2092 114 44 0 chrX 8455881 8456179 -154143751 - AluSx SINE Alu 0 312 2 2255 86 3 29 chrX 8456437 8456819 -154143111 - AluSc SINE Alu 0 374 1 999 220 143 9 chrX 8456858 8457208 -154142722 - L1MB8 LINE L1 -5 6173 5777 4430 83 48 3 chrX 8457349 8457974 -154141956 + MER39B LTR ERV1 1 653 0 405 70 0 0 chrX 8457977 8458034 -154141896 + (CA)n Simple_repeat Simple_repeat 1 57 0 541 167 30 4 chrX 8458577 8458705 -154141225 + LTR49 LTR ERV1 418 595 0 746 333 61 12 chrX 8458726 8459152 -154140778 - LTR16A LTR ERVL 0 450 4 300 274 104 0 chrX 8459667 8459802 -154140128 - L1MB8 LINE L1 -450 5671 5523 1676 172 0 27 chrX 8459833 8460129 -154139801 - AluJb SINE Alu -24 288 1 614 208 0 0 chrX 8460141 8460247 -154139683 - FLAM_A SINE Alu -14 128 23 385 314 99 45 chrX 8460349 8460772 -154139158 - L1MB8 LINE L1 -759 5387 4942 424 49 49 0 chrX 8460909 8460970 -154138960 + LTR23 LTR ERV1 1 64 -373 308 286 61 0 chrX 8461058 8461156 -154138774 + MLT1J2 LTR MaLR 199 302 -148 1883 129 46 40 chrX 8461262 8461633 -154138297 - THE1C LTR MaLR 0 375 3 217 320 0 0 chrX 8461635 8461735 -154138195 + (TA)n Simple_repeat Simple_repeat 2 101 0 464 348 17 6 chrX 8462248 8462429 -154137501 - MIR SINE MIR -48 214 32 437 202 11 0 chrX 8462770 8462859 -154137071 + MIR3 SINE MIR 82 171 -37 816 143 34 11 chrX 8463191 8463366 -154136564 - MER33 DNA MER1_type 0 363 185 686 70 0 0 chrX 8463366 8463452 -154136478 + AluSq SINE Alu 1 86 -226 4409 166 57 56 chrX 8463452 8464522 -154135408 + MER11C LTR ERVK 1 1071 0 1617 101 0 14 chrX 8464522 8464739 -154135191 + AluSq SINE Alu 81 294 -19 719 215 6 0 chrX 8464739 8464900 -154135030 - MER33 DNA MER1_type -264 60 1 1964 164 10 0 chrX 8465304 8465602 -154134328 - AluJb SINE Alu -11 301 1 403 331 7 29 chrX 8465827 8465966 -154133964 - L2 LINE L2 -1 3271 3136 239 263 11 32 chrX 8466095 8466190 -154133740 + MER34 LTR ERV1 41 133 -409 360 253 71 33 chrX 8466471 8466653 -154133277 + MER34 LTR ERV1 353 541 -1 188 263 74 84 chrX 8466682 8466777 -154133153 - L2 LINE L2 -263 3009 2916 3489 113 116 62 chrX 8466866 8467242 -154132688 + LTR8A LTR ERV1 3 357 -370 1928 156 0 7 chrX 8467242 8467537 -154132393 - AluJb SINE Alu -19 293 1 3489 113 116 62 chrX 8467537 8467848 -154132082 + LTR8A LTR ERV1 357 727 0 603 159 139 20 chrX 8467875 8468026 -154131904 + MER33 DNA MER1_type 1 169 -155 4209 137 4 13 chrX 8468026 8468743 -154131187 + MER50 LTR ERV1 1 711 -23 714 97 111 7 chrX 8468744 8468888 -154131042 + MER33 DNA MER1_type 166 324 0 940 123 0 64 chrX 8469912 8470083 -154129847 - MER20 DNA MER1_type -59 160 1 481 191 106 176 chrX 8470734 8471336 -154128594 + MER34 LTR ERV1 1 560 -5 2411 81 3 0 chrX 8471936 8472232 -154127698 - AluSp SINE Alu -16 297 1 2040 150 0 3 chrX 8472380 8472680 -154127250 + AluJb SINE Alu 1 299 -13 1684 198 27 32 chrX 8474839 8475212 -154124718 + MLT1A2 LTR MaLR 4 374 0 2112 114 0 3 chrX 8475494 8475784 -154124146 + AluSx SINE Alu 1 289 -23 407 152 13 0 chrX 8476771 8476850 -154123080 + (TA)n Simple_repeat Simple_repeat 2 81 0 243 0 0 0 chrX 8476850 8476877 -154123053 + (CA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chrX 8476876 8476897 -154123033 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 2198 88 0 0 chrX 8476898 8477172 -154122758 - AluSg1 SINE Alu -35 274 1 336 331 97 6 chrX 8477501 8477676 -154122254 + MIR SINE MIR 66 256 -6 649 272 59 37 chrX 8477690 8477910 -154122020 - MIR SINE MIR 0 262 34 427 390 8 0 chrX 8477963 8478086 -154121844 - L2 LINE L2 0 3272 3149 1106 158 0 36 chrX 8478087 8478283 -154121647 - MER20 DNA MER1_type 0 219 31 2705 88 11 13 chrX 8478462 8478838 -154121092 + THE1C LTR MaLR 1 375 0 383 282 6 70 chrX 8479235 8479391 -154120539 - MLT1J2 LTR MaLR -60 390 245 561 213 128 16 chrX 8479408 8479596 -154120334 - MLT1J1 LTR MaLR -235 211 3 373 182 13 0 chrX 8481066 8481143 -154118787 + MER116 DNA Mariner 1 78 -2 23 54 0 0 chrX 8482582 8482619 -154117311 + AT_rich Low_complexity Low_complexity 1 37 0 220 189 0 0 chrX 8482754 8482791 -154117139 + CT-rich Low_complexity Low_complexity 4 40 0 1075 188 42 14 chrX 8483930 8484143 -154115787 + MER20 DNA MER1_type 1 219 0 3447 151 15 3 chrX 8484227 8484815 -154115115 + MER50 LTR ERV1 10 604 -130 871 137 33 93 chrX 8484816 8484935 -154114995 + MER5A DNA MER1_type 16 122 -67 2425 97 0 0 chrX 8484935 8485245 -154114685 - AluSg SINE Alu 0 310 1 871 137 33 93 chrX 8485245 8485308 -154114622 + MER5A DNA MER1_type 122 187 -2 224 269 60 15 chrX 8485312 8485379 -154114551 + MER5A DNA MER1_type 120 189 0 210 213 0 0 chrX 8485397 8485436 -154114494 + GA-rich Low_complexity Low_complexity 2 43 -5 2028 130 3 17 chrX 8485436 8485735 -154114195 - AluJb SINE Alu -14 298 4 42058 41 1 0 chrX 8487170 8493322 -154106608 + L1PA4 LINE L1 1 6155 0 722 209 0 8 chrX 8493898 8494032 -154105898 + FLAM_A SINE Alu 1 133 0 2261 35 43 3 chrX 8495668 8495950 -154103980 - AluY SINE Alu -18 293 1 1838 144 14 0 chrX 8496180 8496464 -154103466 - AluJb SINE Alu -19 293 6 25 0 0 0 chrX 8497499 8497524 -154102406 + AT_rich Low_complexity Low_complexity 1 25 0 2274 129 0 0 chrX 8497687 8497997 -154101933 + AluSx SINE Alu 1 310 -2 2374 96 0 13 chrX 8499215 8499529 -154100401 - AluSq SINE Alu -3 310 1 613 176 72 93 chrX 8499698 8499891 -154100039 + MER5A DNA MER1_type 1 189 0 198 328 0 0 chrX 8500246 8500310 -154099620 - MIR3 SINE MIR -3 205 142 2359 60 0 0 chrX 8501913 8502239 -154097691 + AluY SINE Alu 1 326 0 543 138 75 0 chrX 8502533 8502627 -154097303 - L1PB4 LINE L1 -7 6149 6049 2621 36 0 10 chrX 8502675 8502983 -154096947 - AluY SINE Alu -5 306 2 621 254 41 53 chrX 8503275 8503594 -154096336 + L1ME2 LINE L1 2184 2498 -3898 * 755 169 26 21 chrX 8503588 8503777 -154096153 + L1ME2 LINE L1 2969 3158 -3057 2259 91 0 28 chrX 8503786 8504105 -154095825 + AluSx SINE Alu 1 310 -2 3245 236 93 35 chrX 8504105 8504965 -154094965 + L1ME2 LINE L1 4001 4810 -1423 2484 55 7 0 chrX 8504965 8505272 -154094658 - AluY SINE Alu -2 309 1 3245 236 93 35 chrX 8505272 8506182 -154093748 + L1ME2 LINE L1 4810 5911 -322 3653 76 0 8 chrX 8506182 8506671 -154093259 + L1PA14 LINE L1 5677 6161 0 3245 236 93 35 chrX 8506671 8507005 -154092925 + L1ME2 LINE L1 5911 6224 -9 2389 99 3 0 chrX 8507210 8507512 -154092418 - AluSp SINE Alu -10 303 1 1104 171 0 6 chrX 8507796 8507972 -154091958 - AluJb SINE Alu -8 304 130 352 170 0 20 chrX 8507982 8508062 -154091868 - AluJ/FLAM SINE Alu -242 60 6 1496 44 0 6 chrX 8508194 8508374 -154091556 - AluY SINE Alu -117 194 16 183 156 0 0 chrX 8509762 8509794 -154090136 + GA-rich Low_complexity Low_complexity 5 36 0 203 278 5 96 chrX 8509822 8510009 -154089921 + GA-rich Low_complexity Low_complexity 6 175 0 353 202 12 0 chrX 8510627 8510711 -154089219 + MER53 DNA DNA 1 85 -104 337 158 66 0 chrX 8510834 8510910 -154089020 + MER53 DNA DNA 105 185 -4 249 108 0 0 chrX 8511060 8511097 -154088833 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 254 231 64 0 chrX 8512394 8512472 -154087458 - MIR SINE MIR -77 185 103 565 264 19 7 chrX 8512677 8512832 -154087098 + MIR SINE MIR 57 213 -49 322 311 108 20 chrX 8516662 8516810 -154083120 + MIR SINE MIR 2 162 -100 231 158 85 61 chrX 8517286 8517368 -154082562 + MIR SINE MIR 179 262 0 227 350 134 29 chrX 8518040 8518317 -154081613 - L2 LINE L2 -90 3182 2877 206 228 0 0 chrX 8518905 8518962 -154080968 + (TTA)n Simple_repeat Simple_repeat 3 59 0 180 364 46 5 chrX 8519190 8519385 -154080545 - L2 LINE L2 -543 2771 2569 192 77 0 0 chrX 8520069 8520095 -154079835 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 432 229 62 0 chrX 8521409 8521505 -154078425 + MER5A DNA MER1_type 4 105 -84 2566 141 14 39 chrX 8521629 8522068 -154077862 - MSTA LTR MaLR 0 428 1 307 299 83 25 chrX 8522118 8522275 -154077655 - MER5A DNA MER1_type 0 189 24 2080 111 4 0 chrX 8522462 8522786 -154077144 + AluSx SINE Alu 3 327 0 2257 128 0 0 chrX 8523093 8523405 -154076525 + AluSx SINE Alu 1 312 0 1660 158 37 11 chrX 8523468 8523741 -154076189 + AluJb SINE Alu 1 280 -32 2480 146 36 5 chrX 8523885 8524296 -154075634 + MSTB LTR MaLR 1 424 -2 609 301 26 0 chrX 8524432 8524625 -154075305 + MIR SINE MIR 3 200 -62 21 0 0 0 chrX 8525975 8525996 -154073934 + AT_rich Low_complexity Low_complexity 1 21 0 189 94 0 0 chrX 8526410 8526442 -154073488 + (T)n Simple_repeat Simple_repeat 1 32 0 242 275 14 0 chrX 8528594 8528663 -154071267 - MIR3 SINE MIR -6 202 133 843 176 59 12 chrX 8529171 8529341 -154070589 - MER5A DNA MER1_type -2 187 10 21 0 0 0 chrX 8529958 8529979 -154069951 + AT_rich Low_complexity Low_complexity 1 21 0 1697 157 7 38 chrX 8530065 8530385 -154069545 - AluJb SINE Alu 0 311 1 2455 52 13 7 chrX 8530589 8530898 -154069032 - AluY SINE Alu 0 311 1 1687 148 44 19 chrX 8532666 8532971 -154066959 + AluJo SINE Alu 5 316 0 258 32 0 0 chrX 8533353 8533384 -154066546 + (CA)n Simple_repeat Simple_repeat 2 32 0 668 280 97 41 chrX 8533525 8533935 -154065995 + MLT1H LTR MaLR 15 549 0 255 287 167 33 chrX 8534117 8534267 -154065663 + MIR SINE MIR 93 262 0 1704 124 0 4 chrX 8534612 8534845 -154065085 - AluJb SINE Alu -80 232 1 707 224 0 0 chrX 8535099 8535246 -154064684 - MER58B DNA MER1_type 0 341 195 7440 41 0 0 chrX 8535274 8536501 -154063429 - L1PA5 LINE L1 0 6154 4930 923 28 14 35 chrX 8537979 8538120 -154061810 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 327 158 40 119 chrX 8538346 8538447 -154061483 + MER20 DNA MER1_type 70 162 -57 1885 157 38 0 chrX 8538748 8539041 -154060889 + AluJb SINE Alu 1 304 -8 2149 87 18 0 chrX 8539423 8539729 -154060201 - AluY SINE Alu 0 311 1 21 110 0 0 chrX 8539937 8540028 -154059902 + AT_rich Low_complexity Low_complexity 1 91 0 234 109 65 0 chrX 8541379 8541425 -154058505 + A-rich Low_complexity Low_complexity 2 50 0 2446 40 10 7 chrX 8542933 8543232 -154056698 + AluY SINE Alu 1 300 -11 2203 81 7 55 chrX 8543609 8543919 -154056011 - AluSq SINE Alu -18 295 1 1668 52 64 0 chrX 8544011 8544244 -154055686 + L1PB1 LINE L1 5534 5781 -370 261 180 0 0 chrX 8544245 8544295 -154055635 + (TG)n Simple_repeat Simple_repeat 2 51 0 2527 103 0 5 chrX 8544313 8544681 -154055249 + L1PB1 LINE L1 5785 6150 -1 223 248 8 39 chrX 8544687 8544699 -154055231 + A-rich Low_complexity Low_complexity 2 13 -113 217 49 0 49 chrX 8544699 8544740 -154055190 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 223 248 8 39 chrX 8544740 8544856 -154055074 + A-rich Low_complexity Low_complexity 13 126 0 238 179 36 0 chrX 8544895 8544951 -154054979 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chrX 8545169 8545191 -154054739 + AT_rich Low_complexity Low_complexity 1 22 0 574 276 108 20 chrX 8545507 8545757 -154054173 - L3 LINE CR1 -514 1063 792 2093 145 22 11 chrX 8546157 8546522 -154053408 - MER31-int LTR ERV1 -4400 536 168 26 30 0 0 chrX 8546695 8546728 -154053202 + AT_rich Low_complexity Low_complexity 1 33 0 210 64 21 43 chrX 8547230 8547277 -154052653 + (AGGGGG)n Simple_repeat Simple_repeat 5 50 0 207 325 98 32 chrX 8548555 8548678 -154051252 - L2 LINE L2 -3 3269 3139 1127 153 0 6 chrX 8548694 8548864 -154051066 + AluJb SINE Alu 1 169 -143 230 224 0 52 chrX 8549024 8549082 -154050848 - L2 LINE L2 -17 3296 3242 2198 47 18 4 chrX 8549298 8549607 -154050323 - AluY SINE Alu 0 313 1 1943 106 7 18 chrX 8549607 8549912 -154050018 - AluSq SINE Alu 0 313 38 3555 113 25 7 chrX 8549916 8550480 -154049450 - Tigger3b DNA MER2_type -657 574 1 474 191 38 38 chrX 8550480 8550610 -154049320 + MER34C LTR ERV1 456 585 0 1743 168 135 25 chrX 8550610 8551005 -154048925 + MLT1D LTR MaLR 67 505 0 188 279 49 0 chrX 8551015 8551076 -154048854 - L2 LINE L2 -944 2370 2307 325 328 62 62 chrX 8551212 8551300 -154048630 - L2 LINE L2 -1180 2134 2047 1713 167 46 7 chrX 8551300 8551582 -154048348 - AluJb SINE Alu -18 294 2 325 328 62 62 chrX 8551582 8552008 -154047922 - L2 LINE L2 -1266 2048 1620 2179 114 0 25 chrX 8552061 8552376 -154047554 - AluSx SINE Alu -5 307 1 2178 116 36 18 chrX 8552838 8553167 -154046763 - MER1B DNA MER1_type -2 335 1 475 329 121 26 chrX 8554247 8554560 -154045370 + L2 LINE L2 2397 2739 -575 346 187 93 173 chrX 8554628 8554917 -154045013 + MER5C DNA MER1_type 14 279 -45 809 201 65 0 chrX 8554941 8555110 -154044820 + MER5A DNA MER1_type 10 189 0 630 183 36 29 chrX 8555144 8555281 -154044649 + MER3 DNA MER1_type 72 209 0 32 26 0 0 chrX 8556114 8556153 -154043777 + AT_rich Low_complexity Low_complexity 1 39 0 2469 88 0 0 chrX 8556549 8556856 -154043074 - AluSx SINE Alu -5 307 1 11899 27 6 10 chrX 8556917 8559095 -154040835 + L1PA4 LINE L1 3971 6154 -1 24 85 0 0 chrX 8559454 8559513 -154040417 + AT_rich Low_complexity Low_complexity 1 59 0 252 122 0 0 chrX 8559575 8559616 -154040314 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 498 75 0 0 chrX 8559616 8559683 -154040247 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 754 139 47 31 chrX 8559692 8559821 -154040109 - FLAM_C SINE Alu -2 131 1 282 281 165 16 chrX 8560077 8560198 -154039732 - MIR SINE MIR -96 166 28 23 54 0 0 chrX 8560314 8560351 -154039579 + AT_rich Low_complexity Low_complexity 1 37 0 232 365 103 19 chrX 8560505 8560661 -154039269 - L2 LINE L2 0 3272 3104 1007 157 37 42 chrX 8560696 8560913 -154039017 + MER20 DNA MER1_type 1 216 -3 981 108 23 0 chrX 8560959 8561089 -154038841 + AluJb SINE Alu 1 133 -179 265 42 21 42 chrX 8561089 8561137 -154038793 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 937 185 0 0 chrX 8561149 8561300 -154038630 + AluJb SINE Alu 129 279 -33 225 0 0 0 chrX 8561300 8561325 -154038605 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1798 117 51 18 chrX 8561456 8561826 -154038104 + Tigger3(Golem) DNA MER2_type 1 3028 -1 236 318 234 7 chrX 8561967 8562261 -154037669 + L2 LINE L2 2715 3060 -212 740 145 192 47 chrX 8562279 8562474 -154037456 - AluJo SINE Alu 0 305 86 372 279 94 41 chrX 8562481 8562725 -154037205 + LTR33 LTR ERVL 25 281 -240 230 262 24 0 chrX 8562755 8562839 -154037091 + LTR33 LTR ERVL 373 458 -63 366 331 44 7 chrX 8563263 8563399 -154036531 - L2 LINE L2 -7 3265 3125 210 71 0 0 chrX 8563890 8563918 -154036012 + (TG)n Simple_repeat Simple_repeat 1 28 0 925 240 83 0 chrX 8564184 8564388 -154035542 - MER58A DNA MER1_type 0 224 4 21 0 0 0 chrX 8564655 8564676 -154035254 + AT_rich Low_complexity Low_complexity 1 21 0 2093 103 22 3 chrX 8564696 8565015 -154034915 + L1MB7 LINE L1 5841 6165 -19 269 200 0 33 chrX 8565046 8565106 -154034824 + L1ME LINE L1 5551 5608 -513 245 284 95 21 chrX 8565362 8565457 -154034473 - MIR SINE MIR -48 214 113 223 298 235 9 chrX 8565591 8565906 -154034024 + L2 LINE L2 2578 2963 -351 206 256 13 0 chrX 8566032 8566110 -154033820 + CT-rich Low_complexity Low_complexity 4 82 0 217 272 291 10 chrX 8566116 8566219 -154033711 + L2 LINE L2 3141 3272 0 1087 157 13 57 chrX 8567110 8567339 -154032591 - MER20 DNA MER1_type 0 219 1 213 255 41 92 chrX 8570718 8570816 -154029114 + MIR3 SINE MIR 70 162 -46 230 220 0 51 chrX 8570816 8570875 -154029055 + GA-rich Low_complexity Low_complexity 3 58 0 335 264 31 78 chrX 8571905 8572034 -154027896 - MIR SINE MIR -108 154 32 1857 240 103 20 chrX 8572122 8572668 -154027262 + MLT1E LTR MaLR 1 591 -2 21 0 0 0 chrX 8572923 8572944 -154026986 + AT_rich Low_complexity Low_complexity 1 21 0 232 339 126 24 chrX 8573563 8573690 -154026240 + MIR SINE MIR 27 166 -96 5778 114 18 10 chrX 8573695 8574012 -154025918 + L1PA16 LINE L1 4872 5185 -981 2133 113 7 13 chrX 8574012 8574322 -154025608 + AluSc SINE Alu 1 308 -1 5778 114 18 10 chrX 8574322 8575310 -154024620 + L1PA16 LINE L1 5185 6166 0 21 0 0 0 chrX 8575347 8575368 -154024562 + AT_rich Low_complexity Low_complexity 1 21 0 2436 82 0 0 chrX 8575458 8575761 -154024169 - AluSg SINE Alu -7 303 1 3706 194 25 55 chrX 8575775 8577180 -154022750 - L1MCa LINE L1 -4861 1046 337 7789 17 0 2 chrX 8577180 8578390 -154021540 - L1PA3 LINE L1 0 6155 4947 3706 194 25 55 chrX 8578390 8578712 -154021218 - L1MCa LINE L1 -5570 337 7 2317 102 0 3 chrX 8579072 8579367 -154020563 + AluSx SINE Alu 1 294 -18 200 270 132 53 chrX 8579367 8579409 -154020521 + L3 LINE CR1 1079 1116 -461 2521 171 85 43 chrX 8579409 8580007 -154019923 - MLT1E2 LTR MaLR -2 624 2 200 270 132 53 chrX 8580007 8580153 -154019777 + L3 LINE CR1 1116 1282 -295 399 302 60 9 chrX 8580167 8580283 -154019647 - L2 LINE L2 -3 3269 3148 6860 33 8 0 chrX 8580764 8582065 -154017865 + L1PA5 LINE L1 4868 6180 0 4167 138 19 19 chrX 8582105 8582807 -154017123 - L1MB4 LINE L1 -1 6179 5475 261 0 0 0 chrX 8582807 8582836 -154017094 + (TG)n Simple_repeat Simple_repeat 2 30 0 4167 138 19 19 chrX 8582836 8582891 -154017039 - L1MB4 LINE L1 -704 5476 5422 379 265 29 10 chrX 8583105 8583207 -154016723 + L3 LINE CR1 1405 1508 -69 524 273 162 15 chrX 8583433 8583631 -154016299 - MIR SINE MIR -5 257 31 198 171 0 0 chrX 8584586 8584627 -154015303 + CT-rich Low_complexity Low_complexity 1 41 0 336 249 117 121 chrX 8585433 8585690 -154014240 - MIR SINE MIR -6 256 1 1703 175 24 15 chrX 8585970 8586308 -154013622 - MER58B DNA MER1_type 0 341 1 620 174 16 0 chrX 8586521 8586642 -154013288 - L1MD2 LINE L1 0 6359 6237 324 102 0 0 chrX 8586687 8586736 -154013194 + (TG)n Simple_repeat Simple_repeat 1 49 0 2201 186 32 0 chrX 8586761 8587202 -154012728 - L1MD1 LINE L1 -183 6059 5605 200 252 30 126 chrX 8587339 8587474 -154012456 - MIR SINE MIR -63 145 24 617 262 12 18 chrX 8588062 8588226 -154011704 + MER5A DNA MER1_type 11 173 -16 33 0 0 0 chrX 8588274 8588307 -154011623 + AT_rich Low_complexity Low_complexity 1 33 0 959 103 7 0 chrX 8589604 8589750 -154010180 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 2010 118 4 0 chrX 8589750 8590029 -154009901 - AluSx SINE Alu -32 280 1 396 289 191 36 chrX 8590844 8591069 -154008861 - MIR SINE MIR -1 261 2 222 176 0 0 chrX 8591252 8591303 -154008627 + CT-rich Low_complexity Low_complexity 2 52 0 276 91 0 0 chrX 8591315 8591359 -154008571 + (GA)n Simple_repeat Simple_repeat 1 44 0 214 296 0 0 chrX 8593890 8593944 -154005986 + CT-rich Low_complexity Low_complexity 1 54 0 200 94 0 31 chrX 8594109 8594141 -154005789 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 6622 76 23 3 chrX 8594214 8595612 -154004318 + L1PA11 LINE L1 4754 6174 0 183 80 0 0 chrX 8595725 8595750 -154004180 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 173 39 0 chrX 8595753 8595805 -154004125 + (TA)n Simple_repeat Simple_repeat 2 55 0 400 317 122 35 chrX 8597982 8598212 -154001718 - MIR SINE MIR 0 262 13 325 367 53 20 chrX 8598268 8598513 -154001417 + L2 LINE L2 2422 2674 -640 462 133 0 0 chrX 8598519 8598594 -154001336 + MADE1 DNA Mariner 6 80 0 244 280 156 82 chrX 8598717 8598999 -154000931 + L2 LINE L2 3008 3310 -3 244 276 13 13 chrX 8599004 8599080 -154000850 + CT-rich Low_complexity Low_complexity 1 76 0 433 285 0 0 chrX 8599340 8599463 -154000467 + HsTC2 DNA Tc2 79 201 -1697 267 54 0 0 chrX 8599582 8599619 -154000311 + (GA)n Simple_repeat Simple_repeat 2 38 0 355 277 36 0 chrX 8599650 8599762 -154000168 + HsTC2 DNA Tc2 1017 1132 -766 231 145 26 79 chrX 8599984 8600060 -153999870 + HsTC2 DNA Tc2 1669 1740 -158 377 206 122 8 chrX 8600124 8600255 -153999675 + HsTC2 DNA Tc2 1745 1890 -8 369 309 54 30 chrX 8600942 8601110 -153998820 - MIR SINE MIR -6 256 85 23 54 0 0 chrX 8601613 8601650 -153998280 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 8601818 8601840 -153998090 + AT_rich Low_complexity Low_complexity 1 22 0 253 241 96 36 chrX 8602490 8602573 -153997357 + L2 LINE L2 3182 3269 -3 24 0 0 0 chrX 8604738 8604762 -153995168 + AT_rich Low_complexity Low_complexity 1 24 0 258 393 61 0 chrX 8607042 8607205 -153992725 - MIR SINE MIR -56 206 34 2305 109 0 0 chrX 8607824 8608135 -153991795 - AluSx SINE Alu -1 311 1 230 295 162 29 chrX 8608603 8608708 -153991222 + MIR3 SINE MIR 5 123 -85 363 351 8 0 chrX 8608773 8608904 -153991026 - L2 LINE L2 -1 3312 3181 528 300 24 15 chrX 8609510 8609798 -153990132 - MLT1I LTR MaLR 0 409 83 417 324 60 42 chrX 8610180 8610396 -153989534 + L3 LINE CR1 607 826 -751 182 219 203 16 chrX 8610573 8610637 -153989293 + L3 LINE CR1 1068 1143 -434 992 184 87 5 chrX 8610673 8610880 -153989050 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrX 8611033 8611054 -153988876 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 217 364 17 17 chrX 8611312 8611430 -153988500 - MIR SINE MIR -61 147 30 988 284 61 77 chrX 8611766 8611843 -153988087 + L2 LINE L2 2537 2614 -699 999 168 42 37 chrX 8611843 8612057 -153987873 - MER20 DNA MER1_type -4 215 1 988 284 61 77 chrX 8612057 8612171 -153987759 + L2 LINE L2 2614 2728 -585 306 0 0 0 chrX 8612171 8612205 -153987725 + (CA)n Simple_repeat Simple_repeat 2 35 0 2806 56 0 6 chrX 8612205 8612564 -153987366 + L1PB1 LINE L1 5793 6149 -2 988 284 61 77 chrX 8612564 8612827 -153987103 + L2 LINE L2 2727 2967 -346 1886 203 35 60 chrX 8612827 8613345 -153986585 + MLT1D LTR MaLR 1 505 0 988 284 61 77 chrX 8613345 8613525 -153986405 + L2 LINE L2 2967 3148 -165 184 244 22 0 chrX 8615287 8615332 -153984598 - L2 LINE L2 -4 3268 3223 1693 187 3 16 chrX 8615431 8615746 -153984184 - AluJb SINE Alu -1 311 1 1481 189 6 6 chrX 8615798 8616110 -153983820 + L1MD3 LINE L1 7474 7785 -210 1105 180 0 3 chrX 8616111 8616322 -153983608 + AluJb SINE Alu 2 283 -29 617 13 0 25 chrX 8616337 8616416 -153983514 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 679 205 78 0 chrX 8616416 8616621 -153983309 + L1MD3 LINE L1 7775 7995 0 214 270 30 20 chrX 8616674 8616774 -153983156 + (CAGAGA)n Simple_repeat Simple_repeat 6 106 0 218 194 48 0 chrX 8618251 8618313 -153981617 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 470 99 33 211 chrX 8618318 8618470 -153981460 - MER20 DNA MER1_type -5 214 90 24 53 0 0 chrX 8618484 8618522 -153981408 + AT_rich Low_complexity Low_complexity 1 38 0 266 289 40 0 chrX 8619602 8619678 -153980252 + L2 LINE L2 3230 3308 -5 636 352 36 0 chrX 8619716 8619935 -153979995 + MIR SINE MIR 19 245 -17 240 312 113 28 chrX 8620155 8620296 -153979634 + MIR SINE MIR 86 238 -24 210 225 0 0 chrX 8620773 8620813 -153979117 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 765 199 8 0 chrX 8622274 8622405 -153977525 + FLAM_A SINE Alu 1 132 -1 2423 152 79 31 chrX 8622430 8622912 -153977018 + MLT1D LTR MaLR 1 505 0 358 291 26 17 chrX 8623036 8623153 -153976777 + MER5A DNA MER1_type 29 146 -43 2146 204 77 54 chrX 8623156 8623416 -153976514 - MLT1E LTR MaLR 0 593 341 830 125 0 21 chrX 8623416 8623560 -153976370 - L1PB1 LINE L1 0 6151 6011 2146 204 77 54 chrX 8623560 8623858 -153976072 - MLT1E LTR MaLR -252 341 22 448 269 174 50 chrX 8624448 8624805 -153975125 + MLT1J2 LTR MaLR 46 446 -4 254 245 157 20 chrX 8625444 8625546 -153974384 - MIR SINE MIR -129 133 18 206 287 61 12 chrX 8625698 8625862 -153974068 + (TATATG)n Simple_repeat Simple_repeat 3 174 0 182 250 163 25 chrX 8625874 8625954 -153973976 - MIR SINE MIR -147 115 25 213 39 0 0 chrX 8626317 8626343 -153973587 + (TA)n Simple_repeat Simple_repeat 2 27 0 198 103 0 0 chrX 8626451 8626480 -153973450 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 888 165 198 0 chrX 8626845 8627027 -153972903 - MER20 DNA MER1_type 0 219 2 259 264 0 66 chrX 8629820 8629911 -153970019 + L2 LINE L2 2545 2629 -685 2287 200 49 9 chrX 8629942 8630473 -153969457 - L1MB8 LINE L1 -13 6165 5614 335 125 0 16 chrX 8630630 8630694 -153969236 - L1MA5 LINE L1 -6 6294 6232 396 343 67 46 chrX 8630724 8631007 -153968923 + L2 LINE L2 2688 2976 -338 572 279 102 26 chrX 8631009 8631235 -153968695 + MIR SINE MIR 7 249 -13 259 389 94 45 chrX 8631223 8631488 -153968442 + L2 LINE L2 2987 3264 -8 * 1080 255 107 41 chrX 8631498 8631985 -153967945 + LTR33 LTR ERVL 1 519 -2 2501 145 20 92 chrX 8632878 8633422 -153966508 - MLT1D LTR MaLR 0 505 1 29 0 0 0 chrX 8633424 8633453 -153966477 + AT_rich Low_complexity Low_complexity 1 29 0 208 274 48 48 chrX 8634177 8634261 -153965669 - L2 LINE L2 -52 3220 3137 601 196 8 15 chrX 8634468 8634601 -153965329 + Charlie7 DNA MER1_type 5 136 -2476 1119 212 83 50 chrX 8634619 8635095 -153964835 - MER39 LTR ERV1 -33 674 1 632 293 94 17 chrX 8635186 8635537 -153964393 + Charlie7 DNA MER1_type 346 723 -1889 235 221 172 0 chrX 8635528 8635650 -153964280 + Charlie7 DNA MER1_type 2416 2558 -54 * 417 39 0 0 chrX 8636980 8637031 -153962899 + (TG)n Simple_repeat Simple_repeat 1 51 0 428 284 25 50 chrX 8638466 8638667 -153961263 + MIR SINE MIR 1 196 -66 217 284 0 63 chrX 8638734 8638829 -153961101 - MIR3 SINE MIR -38 170 82 3855 193 30 42 chrX 8639970 8640865 -153959065 - L1M4 LINE L1 -5149 1393 510 646 319 32 30 chrX 8641054 8641455 -153958475 + MLT1I LTR MaLR 2 403 -6 26734 96 11 14 chrX 8641950 8646051 -153953879 + L1P LINE L1 11 4101 -2045 2149 53 0 0 chrX 8646051 8646316 -153953614 + L1PA6 LINE L1 5889 6154 0 22 56 0 0 chrX 8646597 8646633 -153953297 + AT_rich Low_complexity Low_complexity 1 36 0 2516 122 11 82 chrX 8646690 8647151 -153952779 + MSTC LTR MaLR 1 428 0 323 275 12 69 chrX 8647309 8647469 -153952461 - L1MC4a LINE L1 -1870 5938 5788 2080 105 0 66 chrX 8647698 8648032 -153951898 + AluSx SINE Alu 1 312 0 820 216 18 48 chrX 8648180 8648407 -153951523 - MER74A LTR ERVL 0 558 339 232 262 201 27 chrX 8648446 8648595 -153951335 - MER74B LTR ERVL -395 227 53 2175 229 54 0 chrX 8648595 8649131 -153950799 - L1ME1 LINE L1 -123 6043 5479 266 302 57 19 chrX 8649514 8649620 -153950310 + MLT1J LTR MaLR 378 487 -24 290 330 141 10 chrX 8649940 8650146 -153949784 + MIR SINE MIR 12 244 -18 539 315 25 38 chrX 8650752 8650990 -153948940 + MIR SINE MIR 18 252 -10 * 609 284 37 11 chrX 8650970 8651160 -153948770 - MIR SINE MIR -48 214 20 21 0 0 0 chrX 8651619 8651640 -153948290 + AT_rich Low_complexity Low_complexity 1 21 0 502 208 20 25 chrX 8652004 8652574 -153947356 + (TA)n Simple_repeat Simple_repeat 1 567 0 261 261 29 0 chrX 8652574 8652643 -153947287 + (TATG)n Simple_repeat Simple_repeat 4 74 0 597 165 23 23 chrX 8652644 8652862 -153947068 + (TA)n Simple_repeat Simple_repeat 1 218 0 451 230 60 0 chrX 8653286 8653386 -153946544 + MER81 DNA DNA 1 106 -8 959 281 56 42 chrX 8654446 8654805 -153945125 + LTR16B LTR ERVL 3 366 -98 330 317 17 17 chrX 8656746 8656866 -153943064 + MIR3 SINE MIR 78 197 -11 2174 84 28 0 chrX 8656937 8657221 -153942709 - AluSg SINE Alu -18 292 1 239 173 19 0 chrX 8658788 8658840 -153941090 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 293 96 21 chrX 8658976 8659215 -153940715 + MIR SINE MIR 4 260 -2 353 246 93 0 chrX 8659641 8659759 -153940171 + MER103 DNA DNA 5 133 -33 233 296 17 43 chrX 8659986 8660101 -153939829 + 7SK RNA RNA 10 121 -72 220 297 20 40 chrX 8660294 8660395 -153939535 - MER5A DNA MER1_type -1 188 90 196 304 133 30 chrX 8660295 8660430 -153939500 + MER5A DNA MER1_type 17 165 -24 * 215 336 115 26 chrX 8660450 8660563 -153939367 + MER5B DNA MER1_type 10 132 -46 1060 80 0 7 chrX 8661391 8661541 -153938389 - L1PB1 LINE L1 0 6151 6003 1545 183 123 144 chrX 8661584 8662388 -153937542 - L1MC4a LINE L1 -15 7793 7007 261 111 0 0 chrX 8662538 8662574 -153937356 + Alu SINE Alu 1 36 -266 2113 125 13 0 chrX 8662638 8662943 -153936987 + AluSx SINE Alu 1 309 -3 557 266 8 0 chrX 8663349 8663477 -153936453 - MER58B DNA MER1_type -16 325 197 2408 72 0 0 chrX 8665888 8666181 -153933749 - AluY SINE Alu -18 293 1 324 326 49 56 chrX 8666386 8666530 -153933400 + L2 LINE L2 3115 3257 -15 2428 183 23 2 chrX 8667686 8668173 -153931757 - L1MB7 LINE L1 -19 6165 5669 365 298 16 32 chrX 8668335 8668459 -153931471 + MER5A DNA MER1_type 68 189 0 496 186 20 20 chrX 8668474 8668576 -153931354 + MER5A DNA MER1_type 9 110 -79 4477 125 15 4 chrX 8668594 8669587 -153930343 + L1PA16 LINE L1 4886 5892 -274 690 231 0 66 chrX 8669611 8669793 -153930137 + MER5B DNA MER1_type 5 174 -4 1795 110 140 10 chrX 8669817 8670117 -153929813 - MER1B DNA MER1_type 0 339 1 346 257 23 12 chrX 8670237 8670408 -153929522 + GA-rich Low_complexity Low_complexity 3 175 0 2627 219 53 55 chrX 8670524 8671281 -153928649 - L1ME1 LINE L1 -4 6162 5408 449 278 97 32 chrX 8671350 8671659 -153928271 - L1MC5 LINE L1 -29 7932 7604 1580 11 0 0 chrX 8672187 8672366 -153927564 + L1PA4 LINE L1 5977 6155 0 342 0 0 0 chrX 8672402 8672440 -153927490 + (TG)n Simple_repeat Simple_repeat 2 39 0 957 202 25 15 chrX 8673950 8674148 -153925782 - MER20 DNA MER1_type -14 205 6 1089 264 82 24 chrX 8675505 8676059 -153923871 - L2 LINE L2 -22 3291 2703 826 156 17 165 chrX 8676063 8676300 -153923630 + MER20 DNA MER1_type 1 202 -17 805 294 184 24 chrX 8676300 8676712 -153923218 - L2 LINE L2 -607 2707 2230 297 305 74 68 chrX 8676722 8676912 -153923018 - LTR67 LTR ERVL -10 547 357 1230 272 171 8 chrX 8677184 8677659 -153922271 - L2 LINE L2 -1080 2234 1683 24 53 0 0 chrX 8677722 8677760 -153922170 + AT_rich Low_complexity Low_complexity 1 38 0 315 300 0 30 chrX 8677897 8677997 -153921933 - L1MC4 LINE L1 -1342 6700 6604 7736 177 25 4 chrX 8678551 8680054 -153919876 - L1 LINE L1 -869 5277 3743 703 261 48 0 chrX 8680106 8680313 -153919617 + MER46C DNA MER2_type 113 329 -9 2067 119 0 33 chrX 8680982 8681285 -153918645 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 8682900 8682944 -153916986 + AT_rich Low_complexity Low_complexity 1 44 0 227 241 13 57 chrX 8684160 8684318 -153915612 - L1M4c LINE L1 -3819 2563 2413 21 57 0 0 chrX 8684706 8684741 -153915189 + AT_rich Low_complexity Low_complexity 1 35 0 643 306 55 55 chrX 8684833 8685235 -153914695 - L1M4c LINE L1 -852 1891 1288 1882 162 94 110 chrX 8685242 8685743 -153914187 - L1MDa LINE L1 -6031 509 17 704 92 0 0 chrX 8686395 8686493 -153913437 - AluSc SINE Alu -211 98 1 1843 274 83 21 chrX 8686841 8687616 -153912314 - HAL1 LINE L1 -396 2111 1289 590 259 156 18 chrX 8687777 8688001 -153911929 + MLT1J2 LTR MaLR 196 450 0 399 253 113 88 chrX 8688001 8688504 -153911426 - HAL1 LINE L1 -1218 1289 774 309 304 122 33 chrX 8688624 8688805 -153911125 - HAL1 LINE L1 -1901 606 410 554 306 41 59 chrX 8689054 8689443 -153910487 - LTR16C LTR ERVL -57 434 53 212 306 116 75 chrX 8690245 8690686 -153909244 + L2 LINE L2 2814 3272 0 846 107 112 56 chrX 8690848 8691026 -153908904 + MER5A DNA MER1_type 2 189 0 907 206 40 0 chrX 8691953 8692152 -153907778 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 8693536 8693564 -153906366 + (TCC)n Simple_repeat Simple_repeat 3 31 0 583 298 30 0 chrX 8693933 8694064 -153905866 + MER91C DNA MER1_type 1 135 -5 344 296 102 9 chrX 8694101 8694209 -153905721 - L2 LINE L2 0 3313 3196 186 324 152 19 chrX 8694702 8694807 -153905123 + L2 LINE L2 3145 3263 -9 1812 132 88 15 chrX 8696905 8697246 -153902684 - THE1C LTR MaLR -9 366 1 899 290 57 44 chrX 8697836 8698294 -153901636 - LTR16B LTR ERVL 0 464 1 3139 195 70 17 chrX 8698457 8699238 -153900692 - MER99 DNA DNA 0 828 6 750 208 3 15 chrX 8699624 8699932 -153899998 - MLT1A2 LTR MaLR 0 374 1 3234 139 17 7 chrX 8700301 8700875 -153899055 - L1MB7 LINE L1 -23 6161 5582 525 247 110 26 chrX 8700945 8701099 -153898831 - MER5B DNA MER1_type -8 170 4 580 306 52 6 chrX 8701392 8701565 -153898365 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 8702353 8702436 -153897494 - L2 LINE L2 -84 3229 3151 482 225 220 17 chrX 8702681 8702854 -153897076 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 8702918 8702959 -153896971 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 199 264 194 0 chrX 8702960 8703032 -153896898 - L2 LINE L2 -14 3299 3214 184 297 47 16 chrX 8703091 8703155 -153896775 - L2 LINE L2 -66 3206 3141 1877 153 7 0 chrX 8703464 8703739 -153896191 + AluJo SINE Alu 20 296 -16 285 318 77 12 chrX 8704804 8704974 -153894956 + L2 LINE L2 1668 1848 -1466 805 281 116 44 chrX 8705617 8705915 -153894015 + L2 LINE L2 1671 2007 -1307 1944 152 7 13 chrX 8705915 8706250 -153893680 + AluSx SINE Alu 1 312 0 805 281 116 44 chrX 8706250 8706357 -153893573 + L2 LINE L2 2007 2105 -1209 1411 169 4 4 chrX 8706374 8706635 -153893295 - L1MB5 LINE L1 0 6174 5914 330 273 13 0 chrX 8706675 8706752 -153893178 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 8706778 8706806 -153893124 + (CA)n Simple_repeat Simple_repeat 2 29 0 808 151 78 0 chrX 8706886 8707065 -153892865 - L1MB5 LINE L1 -277 5907 5715 1447 227 127 55 chrX 8707066 8707578 -153892352 + L2 LINE L2 2103 2651 -663 1148 187 9 5 chrX 8708233 8708447 -153891483 + MER20 DNA MER1_type 1 215 -4 416 255 39 39 chrX 8709126 8709279 -153890651 - MIR3 SINE MIR -15 193 41 198 0 0 0 chrX 8710644 8710666 -153889264 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 8711185 8711220 -153888710 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 8711640 8711720 -153888210 + L2 LINE L2 3231 3307 -6 193 373 124 17 chrX 8711818 8711995 -153887935 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 8712187 8712214 -153887716 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 8712402 8712478 -153887452 + L2 LINE L2 2559 2636 -678 7468 32 4 0 chrX 8712723 8714232 -153885698 - L1PA5 LINE L1 -4 6150 4639 26 113 0 0 chrX 8714311 8714435 -153885495 + AT_rich Low_complexity Low_complexity 1 124 0 670 285 84 45 chrX 8715971 8716150 -153883780 + L2 LINE L2 2620 2791 -522 3569 121 21 8 chrX 8716150 8716670 -153883260 - MER1A DNA MER1_type 0 527 1 670 285 84 45 chrX 8716670 8717068 -153882862 + L2 LINE L2 2791 3216 -97 1080 199 14 5 chrX 8717234 8717450 -153882480 - MER58A DNA MER1_type 0 224 7 232 295 0 0 chrX 8718231 8718292 -153881638 - MIR SINE MIR -110 152 92 519 260 78 26 chrX 8718442 8718596 -153881334 + MER5B DNA MER1_type 17 178 0 1320 180 9 0 chrX 8718604 8718826 -153881104 - MER58A DNA MER1_type 0 224 1 353 343 108 5 chrX 8719032 8719245 -153880685 + MIR SINE MIR 12 246 -16 685 281 112 42 chrX 8719869 8720395 -153879535 + MLT1L LTR MaLR 5 567 -48 281 284 136 11 chrX 8720828 8720916 -153879014 - L2 LINE L2 0 3272 3174 1036 182 5 0 chrX 8720942 8721145 -153878785 + MER3 DNA MER1_type 6 209 0 672 292 27 0 chrX 8722609 8722794 -153877136 + MIR SINE MIR 15 204 -58 222 365 48 7 chrX 8723108 8723253 -153876677 - MIR SINE MIR -66 196 46 233 57 29 0 chrX 8723501 8723536 -153876394 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 22431 164 17 13 chrX 8724682 8731206 -153868724 + L1PA11 LINE L1 1 7610 -2 308 272 70 63 chrX 8731695 8731926 -153868004 + MIR3 SINE MIR 4 233 -29 1816 181 7 7 chrX 8732421 8732720 -153867210 - AluJb SINE Alu -13 299 1 1976 171 131 11 chrX 8733149 8733600 -153866330 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chrX 8733991 8734012 -153865918 + AT_rich Low_complexity Low_complexity 1 21 0 402 135 0 0 chrX 8734012 8734086 -153865844 - L1MA4 LINE L1 0 6300 6227 943 53 15 0 chrX 8734086 8734217 -153865713 + L1MA4 LINE L1 6128 6260 -40 181 179 0 51 chrX 8734561 8734600 -153865330 - L3 LINE CR1 -250 1327 1291 261 0 0 0 chrX 8734691 8734720 -153865210 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 189 147 0 0 chrX 8735132 8735166 -153864764 + (TA)n Simple_repeat Simple_repeat 1 34 0 231 319 121 33 chrX 8735765 8735856 -153864074 + L2 LINE L2 3174 3272 0 1183 198 28 0 chrX 8736573 8736821 -153863109 - L1MB7 LINE L1 -16 6168 5914 2348 144 8 0 chrX 8736895 8737257 -153862673 - MLT1A1 LTR MaLR 0 365 1 1725 208 46 0 chrX 8737263 8737652 -153862278 + MLT1E2 LTR MaLR 219 625 -1 181 269 154 0 chrX 8737920 8737998 -153861932 + L2 LINE L2 1613 1702 -1612 807 10 0 10 chrX 8738006 8738108 -153861822 - L1PA4 LINE L1 -163 5992 5892 1357 48 0 0 chrX 8738108 8738269 -153861661 + L1PA4 LINE L1 5987 6153 -2 215 77 0 26 chrX 8738663 8738702 -153861228 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 12760 27 2 2 chrX 8738702 8741043 -153858887 - L1PA3 LINE L1 -24 6131 3789 1127 174 33 5 chrX 8741161 8741374 -153858556 + MER20 DNA MER1_type 1 219 0 195 100 0 0 chrX 8741475 8741505 -153858425 + (GGGAGA)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chrX 8741972 8741993 -153857937 + AT_rich Low_complexity Low_complexity 1 21 0 355 328 41 62 chrX 8743928 8744123 -153855807 - MIR3 SINE MIR -4 204 14 1154 161 22 40 chrX 8744456 8744679 -153855251 - MER20 DNA MER1_type 0 219 1 3921 16 0 0 chrX 8745381 8745829 -153854101 - L1PA2 LINE L1 -2 6153 5706 902 53 0 0 chrX 8745840 8745953 -153853977 - L1PA10 LINE L1 0 6168 6056 1171 261 35 61 chrX 8746160 8746701 -153853229 - L1ME3 LINE L1 -8 6154 5628 186 356 96 0 chrX 8747010 8747114 -153852816 + MIR SINE MIR 11 124 -138 7757 20 0 0 chrX 8747538 8748843 -153851087 - L1PA3 LINE L1 0 6155 4851 1359 146 47 29 chrX 8749405 8749717 -153850213 - L1MA4 LINE L1 -9 6294 6004 40 49 0 0 chrX 8749864 8749925 -153850005 + AT_rich Low_complexity Low_complexity 1 61 0 1094 193 9 14 chrX 8751438 8751656 -153848274 + MER20 DNA MER1_type 3 219 0 333 349 40 7 chrX 8751861 8752010 -153847920 + MIR SINE MIR 95 248 -14 2234 141 88 13 chrX 8752795 8753193 -153846737 - MSTA LTR MaLR 0 428 1 200 200 0 0 chrX 8754343 8754378 -153845552 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 186 270 0 0 chrX 8754401 8754475 -153845455 + (TA)n Simple_repeat Simple_repeat 1 74 0 2289 123 17 57 chrX 8754603 8755008 -153844922 + MLT1B LTR MaLR 1 389 -1 475 267 86 28 chrX 8755083 8755348 -153844582 + L1ME LINE L1 5521 5809 -361 243 0 0 0 chrX 8755421 8755448 -153844482 + (TG)n Simple_repeat Simple_repeat 2 28 0 330 252 108 7 chrX 8755948 8756087 -153843843 - MER103 DNA DNA -6 160 8 204 135 27 0 chrX 8756272 8756309 -153843621 + (CAA)n Simple_repeat Simple_repeat 2 39 0 280 276 60 141 chrX 8756684 8756803 -153843127 + MER91B DNA MER1_type 8 106 -84 2243 106 0 13 chrX 8756803 8757115 -153842815 - AluSc SINE Alu -1 308 1 280 276 60 141 chrX 8757115 8757194 -153842736 + MER91B DNA MER1_type 106 190 0 256 285 200 15 chrX 8757236 8757366 -153842564 + MIR3 SINE MIR 17 170 -38 * 638 310 67 65 chrX 8757365 8757736 -153842194 + L2 LINE L2 2896 3267 -5 755 29 59 0 chrX 8757777 8757879 -153842051 - L1PA13 LINE L1 -4 6159 6052 766 284 36 4 chrX 8758537 8758762 -153841168 + MIR SINE MIR 15 246 -16 2033 132 7 0 chrX 8759512 8759800 -153840130 - AluSx SINE Alu -22 290 1 452 18 18 0 chrX 8759849 8759906 -153840024 + (TG)n Simple_repeat Simple_repeat 2 59 0 844 219 0 12 chrX 8760785 8760949 -153838981 + MER5A DNA MER1_type 6 167 -22 224 261 22 54 chrX 8761987 8762079 -153837851 + MIR SINE MIR 63 151 -111 384 40 0 0 chrX 8762339 8762389 -153837541 + (TG)n Simple_repeat Simple_repeat 2 51 0 446 266 17 35 chrX 8764238 8764411 -153835519 + MER117 DNA MER1_type 1 170 -27 26462 41 4 2 chrX 8764588 8768682 -153831248 + L1PA3 LINE L1 2091 6191 0 369 355 108 0 chrX 8768727 8768930 -153831000 + HAL1 LINE L1 359 583 -1924 7159 50 5 0 chrX 8769083 8770136 -153829794 + L1PA5 LINE L1 5099 6152 -2 22 35 0 0 chrX 8770150 8770179 -153829751 + AT_rich Low_complexity Low_complexity 1 29 0 220 311 0 0 chrX 8771948 8772009 -153827921 + CT-rich Low_complexity Low_complexity 4 64 0 392 324 171 24 chrX 8772220 8772628 -153827302 + HAL1 LINE L1 881 1305 -1202 285 200 12 50 chrX 8773020 8773100 -153826830 + L2 LINE L2 3231 3307 -6 192 373 124 17 chrX 8773198 8773375 -153826555 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 8773567 8773594 -153826336 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 8773782 8773858 -153826072 + L2 LINE L2 2559 2636 -678 1341 42 0 0 chrX 8774103 8774268 -153825662 - L1PA4 LINE L1 -4 6151 5987 839 10 0 0 chrX 8774268 8774364 -153825566 + L1PA4 LINE L1 5897 5992 -163 183 269 154 0 chrX 8774372 8774450 -153825480 - L2 LINE L2 -1612 1702 1613 1825 197 51 8 chrX 8774718 8775108 -153824822 - MLT1E2 LTR MaLR -1 625 219 2029 165 11 11 chrX 8775114 8775477 -153824453 + MLT1A1 LTR MaLR 1 363 -2 217 293 98 49 chrX 8775977 8776141 -153823789 + MIR SINE MIR 13 184 -78 21 36 0 0 chrX 8776575 8776603 -153823327 + AT_rich Low_complexity Low_complexity 1 28 0 306 300 138 36 chrX 8779485 8779732 -153820198 - L1 LINE L1 -2860 3286 3015 557 251 99 70 chrX 8780656 8780999 -153818931 + MLT1L LTR MaLR 5 357 -258 6432 34 7 2 chrX 8781318 8782377 -153817553 + L1P1 LINE L1 4618 5684 -471 191 36 36 0 chrX 8783602 8783630 -153816300 + (TCC)n Simple_repeat Simple_repeat 3 31 0 463 292 69 0 chrX 8784000 8784130 -153815800 + MER91C DNA MER1_type 1 139 -1 4277 69 21 58 chrX 8784386 8785054 -153814876 - L1P LINE L1 -865 5281 4639 25 105 0 0 chrX 8785133 8785228 -153814702 + AT_rich Low_complexity Low_complexity 1 95 0 816 266 133 0 chrX 8786290 8786516 -153813414 - LTR33 LTR ERVL -23 498 243 804 158 6 32 chrX 8788685 8788843 -153811087 + L1PA6 LINE L1 5852 6005 -149 286 238 24 24 chrX 8790280 8790406 -153809524 + T-rich Low_complexity Low_complexity 3 128 0 6861 139 13 16 chrX 8790599 8792593 -153807337 + L1PA11 LINE L1 4186 6171 -3 299 272 70 63 chrX 8793083 8793314 -153806616 + MIR3 SINE MIR 4 233 -29 1789 181 7 7 chrX 8793809 8794108 -153805822 - AluJb SINE Alu -13 299 1 1981 171 131 11 chrX 8794538 8794989 -153804941 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chrX 8795380 8795401 -153804529 + AT_rich Low_complexity Low_complexity 1 21 0 414 135 0 0 chrX 8795401 8795475 -153804455 - L1MA4 LINE L1 0 6300 6227 973 61 15 0 chrX 8795475 8795606 -153804324 + L1MA4 LINE L1 6128 6260 -40 181 179 0 51 chrX 8795949 8795988 -153803942 - L3 LINE CR1 -250 1327 1291 261 0 0 0 chrX 8796079 8796108 -153803822 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 189 147 0 0 chrX 8796520 8796554 -153803376 + (TA)n Simple_repeat Simple_repeat 1 34 0 236 319 121 33 chrX 8797153 8797244 -153802686 + L2 LINE L2 3174 3272 0 1202 198 28 0 chrX 8797961 8798209 -153801721 - L1MB7 LINE L1 -16 6168 5914 2350 144 8 0 chrX 8798283 8798645 -153801285 - MLT1A1 LTR MaLR 0 365 1 1855 198 51 5 chrX 8798651 8799040 -153800890 + MLT1E2 LTR MaLR 219 625 -1 789 39 0 10 chrX 8799394 8799496 -153800434 - L1PA4 LINE L1 -163 5992 5892 1356 48 0 0 chrX 8799496 8799657 -153800273 + L1PA4 LINE L1 5987 6153 -2 24 0 0 0 chrX 8799969 8799993 -153799937 + AT_rich Low_complexity Low_complexity 1 24 0 427 257 104 64 chrX 8800383 8800632 -153799298 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 8800704 8800785 -153799145 + AT_rich Low_complexity Low_complexity 1 81 0 1021 211 0 0 chrX 8800963 8801171 -153798759 + MER3 DNA MER1_type 1 208 -1 717 289 84 52 chrX 8801588 8801945 -153797985 + L1ME LINE L1 2943 3328 -2818 2311 112 0 0 chrX 8801945 8802257 -153797673 + AluSx SINE Alu 1 312 0 717 289 84 52 chrX 8802257 8802509 -153797421 + L1ME LINE L1 3328 3571 -2575 1801 172 0 6 chrX 8802680 8802994 -153796936 + AluJo SINE Alu 1 312 0 886 208 26 40 chrX 8803151 8803377 -153796553 + L1ME LINE L1 5320 5542 -624 2516 220 55 32 chrX 8803479 8804165 -153795765 + L1ME1 LINE L1 5461 6162 -4 391 323 94 12 chrX 8804159 8804661 -153795269 + L1M4 LINE L1 2260 2802 -3344 * 22 0 0 0 chrX 8804686 8804708 -153795222 + AT_rich Low_complexity Low_complexity 1 22 0 274 269 206 50 chrX 8804764 8805046 -153794884 + HAL1 LINE L1 28 353 -2154 * 14565 23 0 0 chrX 8805013 8806739 -153793191 + L1P LINE L1 2903 4628 -1518 532 258 112 83 chrX 8806875 8807294 -153792636 - L1ME4a LINE L1 -81 6040 5600 2217 108 3 0 chrX 8807294 8807589 -153792341 - AluSc SINE Alu -13 296 1 532 258 112 83 chrX 8807589 8807723 -153792207 - L1ME4a LINE L1 -521 5600 5471 4953 157 77 35 chrX 8808388 8809416 -153790514 + MER11C LTR ERVK 1 1071 0 437 271 68 15 chrX 8809440 8809573 -153790357 + MIR SINE MIR 2 141 -121 371 330 42 91 chrX 8810013 8810180 -153789750 + L2 LINE L2 2325 2499 -815 2035 146 0 0 chrX 8810180 8810475 -153789455 - AluSx SINE Alu -12 300 6 371 330 42 91 chrX 8810475 8810876 -153789054 + L2 LINE L2 2499 2865 -449 205 225 25 0 chrX 8811710 8811750 -153788180 + L2 LINE L2 3216 3256 -16 215 322 11 11 chrX 8813576 8813666 -153786264 + CT-rich Low_complexity Low_complexity 1 90 0 362 241 60 0 chrX 8813730 8813813 -153786117 + MIR SINE MIR 136 223 -39 188 200 40 40 chrX 8813913 8813963 -153785967 + L3b LINE CR1 1277 1326 -257 21 0 0 0 chrX 8814244 8814265 -153785665 + AT_rich Low_complexity Low_complexity 1 21 0 240 315 102 35 chrX 8814422 8814619 -153785311 + MIR SINE MIR 13 222 -40 21 36 0 0 chrX 8815018 8815046 -153784884 + AT_rich Low_complexity Low_complexity 1 28 0 717 143 24 16 chrX 8815339 8815465 -153784465 + L1PB3 LINE L1 6018 6144 -10 409 238 91 75 chrX 8815478 8815664 -153784266 - L1ME1 LINE L1 -134 6033 5846 1553 157 14 7 chrX 8816461 8816747 -153783183 - L1MB3 LINE L1 -2 6181 5894 1549 258 131 52 chrX 8816978 8817911 -153782019 - HAL1 LINE L1 -1143 1364 359 204 83 56 0 chrX 8817956 8817992 -153781938 + T-rich Low_complexity Low_complexity 2 39 0 8123 86 4 2 chrX 8817995 8819914 -153780016 - L1PA3 LINE L1 -3 6152 4231 528 319 26 35 chrX 8821030 8821262 -153778668 + MIR SINE MIR 12 241 -21 255 296 10 20 chrX 8821310 8821408 -153778522 + (TAG)n Simple_repeat Simple_repeat 2 98 0 366 23 0 0 chrX 8821470 8821513 -153778417 + (GA)n Simple_repeat Simple_repeat 1 43 0 266 256 26 0 chrX 8822218 8822296 -153777634 - MIR3 SINE MIR -5 203 124 1512 115 93 0 chrX 8822704 8822958 -153776972 + AluSx SINE Alu 38 312 0 427 257 104 64 chrX 8823372 8823621 -153776309 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 8823693 8823774 -153776156 + AT_rich Low_complexity Low_complexity 1 81 0 240 276 23 0 chrX 8824450 8824537 -153775393 - L1MCc LINE L1 -6316 107 19 790 251 12 0 chrX 8824745 8824916 -153775014 + MIR SINE MIR 79 251 -11 3511 102 4 25 chrX 8825160 8825680 -153774250 + MER41B LTR ERV1 1 509 -126 1336 150 47 29 chrX 8825992 8826304 -153773626 + L1MA4 LINE L1 6004 6294 -9 1081 142 18 18 chrX 8826867 8827085 -153772845 + L1P LINE L1 4851 5068 -1078 240 186 12 23 chrX 8827332 8827418 -153772512 + GA-rich Low_complexity Low_complexity 1 85 0 30797 78 8 163 chrX 8829046 8829424 -153770506 - L1PA16 LINE L1 -1 6165 5730 4800 43 7 0 chrX 8829424 8830007 -153769923 - LTR14C LTR ERVK 0 587 1 30797 78 8 163 chrX 8830007 8836914 -153763016 - L1PA16 LINE L1 -436 5730 12 23 54 0 0 chrX 8836948 8836985 -153762945 + AT_rich Low_complexity Low_complexity 1 37 0 294 264 139 21 chrX 8837056 8837200 -153762730 - MIR SINE MIR -41 221 61 894 294 138 12 chrX 8837801 8838288 -153761642 - HAL1 LINE L1 0 2507 1960 3248 204 22 9 chrX 8838365 8839005 -153760925 - MLT1E1 LTR MaLR -10 623 3 2920 252 129 83 chrX 8839028 8839579 -153760351 - HAL1 LINE L1 -678 1829 1305 2249 78 7 3 chrX 8839579 8839872 -153760058 - AluY SINE Alu -17 294 1 2920 252 129 83 chrX 8839872 8839992 -153759938 - HAL1 LINE L1 -1202 1305 1192 2079 126 7 0 chrX 8839992 8840293 -153759637 - AluSx SINE Alu -7 305 3 2920 252 129 83 chrX 8840293 8841361 -153758569 - HAL1 LINE L1 -1315 1192 9 386 324 90 33 chrX 8841368 8841701 -153758229 + L1M4 LINE L1 4581 4932 -1214 202 250 0 0 chrX 8841903 8841943 -153757987 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 1482 253 75 36 chrX 8842268 8842777 -153757153 - MLT1G1 LTR MaLR -5 544 1 9001 218 13 8 chrX 8842809 8845410 -153754520 + L1PA16 LINE L1 3146 5791 -375 4889 38 5 0 chrX 8845410 8845994 -153753936 + LTR14C LTR ERVK 1 587 0 9001 218 13 8 chrX 8845994 8846367 -153753563 + L1PA16 LINE L1 5791 6160 -6 216 0 0 0 chrX 8846822 8846846 -153753084 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 432 275 53 23 chrX 8847415 8847546 -153752384 - MER5A DNA MER1_type -29 160 26 667 196 176 0 chrX 8847615 8847768 -153752162 - MIR SINE MIR -60 202 23 27 29 0 0 chrX 8848563 8848597 -153751333 + AT_rich Low_complexity Low_complexity 1 34 0 1607 160 190 11 chrX 8850184 8850547 -153749383 - MSTA LTR MaLR 0 428 1 269 248 143 56 chrX 8851120 8851281 -153748649 - MER5B DNA MER1_type -2 176 2 1241 164 28 0 chrX 8852164 8852377 -153747553 + MER20 DNA MER1_type 1 219 0 333 316 165 0 chrX 8852628 8852761 -153747169 + L2 LINE L2 3117 3271 -1 521 246 47 15 chrX 8853253 8853503 -153746427 + LTR16A LTR ERVL 144 443 -7 472 244 67 107 chrX 8853990 8854260 -153745670 + MLT1J2 LTR MaLR 68 326 -124 363 78 0 0 chrX 8855194 8855245 -153744685 + (TG)n Simple_repeat Simple_repeat 2 52 0 14500 161 27 18 chrX 8855295 8859398 -153740532 - L1MA3 LINE L1 0 7724 3617 5767 184 41 11 chrX 8859399 8860560 -153739370 - L1MA3 LINE L1 -6358 1207 12 1489 186 20 20 chrX 8860566 8860964 -153738966 - L1 LINE L1 -2667 4898 4501 7777 147 54 3 chrX 8860975 8862256 -153737674 - L1 LINE L1 -6204 1361 16 2433 233 64 90 chrX 8862258 8863182 -153736748 - MER69 DNA AcHobo -1613 913 14 338 261 24 68 chrX 8863232 8863439 -153736491 - L1MC5 LINE L1 -44 7917 7720 23 0 0 0 chrX 8864052 8864075 -153735855 + AT_rich Low_complexity Low_complexity 1 23 0 257 386 40 0 chrX 8864371 8864472 -153735458 - L2 LINE L2 -65 3207 3103 366 337 33 37 chrX 8864531 8864831 -153735099 - L2 LINE L2 -549 2765 2467 187 133 44 0 chrX 8865578 8865623 -153734307 + (TA)n Simple_repeat Simple_repeat 2 48 0 190 259 56 19 chrX 8865730 8865784 -153734146 - L2 LINE L2 -2 3270 3215 6028 26 1 0 chrX 8865971 8866673 -153733257 + L1PA4 LINE L1 5448 6150 -5 494 312 94 8 chrX 8867914 8868148 -153731782 - MLT1I LTR MaLR -4 405 152 258 273 149 13 chrX 8868156 8868310 -153731620 - MLT1I LTR MaLR -223 186 12 4398 104 3 20 chrX 8868317 8868963 -153730967 - MER41B LTR ERV1 0 635 1 783 251 12 0 chrX 8869207 8869378 -153730552 - MIR SINE MIR -11 251 79 699 304 28 33 chrX 8869583 8869974 -153729956 + L1MCc LINE L1 22 410 -6013 2775 127 29 0 chrX 8869994 8870410 -153729520 - MSTA LTR MaLR 0 428 1 2117 206 113 71 chrX 8870580 8870817 -153729113 + L1ME2 LINE L1 5277 5502 -662 727 150 8 31 chrX 8870817 8870944 -153728986 + FLAM_C SINE Alu 1 124 -9 2117 206 113 71 chrX 8870944 8871552 -153728378 + L1ME2 LINE L1 5502 6158 -6 536 278 159 0 chrX 8872127 8872278 -153727652 - MER5A DNA MER1_type -6 183 9 241 255 0 0 chrX 8873848 8873895 -153726035 + (CAT)n Simple_repeat Simple_repeat 2 48 0 231 274 24 0 chrX 8873942 8874026 -153725904 + L1ME LINE L1 5576 5661 -460 256 228 0 25 chrX 8874079 8874158 -153725772 + L1M4 LINE L1 4584 4660 -1486 320 260 65 0 chrX 8874210 8874287 -153725643 - L2 LINE L2 -4 3309 3228 34 72 0 0 chrX 8874320 8874389 -153725541 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chrX 8874822 8874843 -153725087 + AT_rich Low_complexity Low_complexity 1 21 0 465 98 73 0 chrX 8874880 8874962 -153724968 - L1MC1 LINE L1 0 6333 6246 297 304 29 0 chrX 8875105 8875207 -153724723 - MLT1L LTR MaLR -15 600 496 850 256 60 38 chrX 8875241 8875588 -153724342 - MLT1L LTR MaLR -224 391 37 203 241 133 12 chrX 8875649 8875732 -153724198 + MIR SINE MIR 120 212 -50 812 192 99 0 chrX 8875897 8876069 -153723861 - MER5A DNA MER1_type 0 189 1 1814 139 0 23 chrX 8877384 8877508 -153722422 - L1PA16 LINE L1 -5 6161 6036 2054 106 70 25 chrX 8877508 8877867 -153722063 + THE1C LTR MaLR 1 375 0 1814 139 0 23 chrX 8877867 8878044 -153721886 - L1PA16 LINE L1 -130 6036 5867 527 347 34 5 chrX 8878480 8878858 -153721072 - L1ME3A LINE L1 -286 5884 5496 2898 174 5 9 chrX 8879261 8879817 -153720113 + L1MB4 LINE L1 5625 6178 -2 209 214 0 0 chrX 8879865 8879907 -153720023 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 314 259 63 28 chrX 8879915 8880058 -153719872 + MLT1K LTR MaLR 432 579 -9 381 43 0 0 chrX 8880196 8880243 -153719687 + (TG)n Simple_repeat Simple_repeat 2 48 0 204 289 0 0 chrX 8880673 8880718 -153719212 + polypurine Low_complexity Low_complexity 1 45 0 22 0 0 0 chrX 8880978 8881000 -153718930 + AT_rich Low_complexity Low_complexity 1 22 0 2867 156 34 6 chrX 8882493 8882966 -153716964 + MER66B LTR ERV1 1 486 0 224 308 242 6 chrX 8883087 8883269 -153716661 - MIR SINE MIR -37 225 1 21 0 0 0 chrX 8883545 8883566 -153716364 + AT_rich Low_complexity Low_complexity 1 21 0 340 337 63 19 chrX 8884577 8884782 -153715148 - L1MC4a LINE L1 -1888 5920 5707 261 256 58 39 chrX 8884784 8884940 -153714990 - L1MC4a LINE L1 -2074 5734 5576 5298 174 39 57 chrX 8884941 8885481 -153714449 + L1MC3 LINE L1 6545 7093 -692 189 74 0 0 chrX 8885481 8885508 -153714422 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 5298 174 39 57 chrX 8885508 8886223 -153713707 + L1MC3 LINE L1 7093 7777 -8 332 259 26 9 chrX 8886609 8886725 -153713205 + L1M4 LINE L1 4731 4848 -1298 234 156 0 0 chrX 8886735 8886780 -153713150 + (CA)n Simple_repeat Simple_repeat 2 46 0 245 301 75 0 chrX 8887106 8887199 -153712731 - MIR SINE MIR -7 255 156 1021 276 31 29 chrX 8887349 8887782 -153712148 + L1MC4 LINE L1 6484 7016 -877 615 14 0 0 chrX 8889423 8889495 -153710435 + (TC)n Simple_repeat Simple_repeat 1 72 0 457 311 164 15 chrX 8889521 8889923 -153710007 + LTR33 LTR ERVL 35 496 -25 2868 6 0 0 chrX 8889953 8890264 -153709666 + AluYa5 SINE Alu 1 311 0 1116 261 74 30 chrX 8890502 8890932 -153708998 + LTR16A LTR ERVL 2 450 0 308 148 16 0 chrX 8893006 8893067 -153706863 + GA-rich Low_complexity Low_complexity 3 64 0 533 64 13 0 chrX 8893801 8893879 -153706051 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 36 0 0 0 chrX 8894106 8894142 -153705788 + AT_rich Low_complexity Low_complexity 1 36 0 992 231 9 18 chrX 8894701 8894926 -153705004 - MER58A DNA MER1_type 0 224 2 255 61 0 0 chrX 8895164 8895197 -153704733 + (A)n Simple_repeat Simple_repeat 1 33 0 306 0 0 0 chrX 8896975 8897009 -153702921 + (CA)n Simple_repeat Simple_repeat 2 35 0 198 347 31 41 chrX 8897120 8897218 -153702712 - MER5A DNA MER1_type 0 189 93 364 250 9 45 chrX 8897237 8897349 -153702581 + MER5A DNA MER1_type 47 154 -35 2189 114 0 13 chrX 8897440 8897782 -153702148 - AluSq SINE Alu 0 338 1 27 0 0 0 chrX 8897935 8897962 -153701968 + AT_rich Low_complexity Low_complexity 1 27 0 315 231 150 54 chrX 8898132 8898392 -153701538 - L1MC4 LINE L1 -17 8025 7741 300 267 42 33 chrX 8898443 8898563 -153701367 - L1MC4 LINE L1 -283 7759 7639 327 135 19 0 chrX 8898563 8898615 -153701315 - MLT1E1 LTR MaLR -601 53 1 1647 221 46 7 chrX 8898631 8899092 -153700838 - L1MEc LINE L1 -3905 2491 2013 5662 82 7 4 chrX 8899099 8899916 -153700014 - L1PA14 LINE L1 0 6161 5342 4786 168 8 4 chrX 8899917 8900848 -153699082 + L1PA14 LINE L1 4397 5330 -816 2018 260 57 36 chrX 8900856 8900989 -153698941 - L1MEc LINE L1 -4385 2011 1882 2177 81 7 7 chrX 8900989 8901285 -153698645 - L1PA7 LINE L1 -2 6152 5857 2018 260 57 36 chrX 8901285 8901575 -153698355 - L1MEc LINE L1 -4514 1882 1600 189 74 0 0 chrX 8901575 8901602 -153698328 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2018 260 57 36 chrX 8901602 8902174 -153697756 - L1MEc LINE L1 -4796 1600 994 2270 265 45 14 chrX 8902183 8902825 -153697105 - L1MEc LINE L1 -5699 697 36 323 257 140 15 chrX 8903746 8903882 -153696048 + MIR SINE MIR 4 156 -106 1768 202 42 18 chrX 8903888 8904339 -153695591 + LTR37B LTR ERV1 6 467 -1 263 277 69 0 chrX 8904340 8904441 -153695489 + MIR SINE MIR 155 262 0 2207 108 7 0 chrX 8904907 8905204 -153694726 - AluSx SINE Alu -13 299 1 301 295 32 0 chrX 8905938 8906033 -153693897 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 300 214 0 0 chrX 8906161 8906217 -153693713 + MER5A DNA MER1_type 9 64 -125 397 237 79 0 chrX 8906307 8906421 -153693509 + MER3 DNA MER1_type 46 168 -41 1336 179 179 3 chrX 8906426 8906756 -153693174 + MER3 DNA MER1_type 2236 2623 0 583 187 32 8 chrX 8906782 8906905 -153693025 - MER5B DNA MER1_type -50 128 3 265 216 27 54 chrX 8907185 8907259 -153692671 - MER5A DNA MER1_type -1 188 117 277 179 357 0 chrX 8907281 8907365 -153692565 - MER81 DNA DNA 0 114 1 197 169 92 62 chrX 8907366 8907431 -153692499 + MER5A DNA MER1_type 122 188 -1 521 245 13 14 chrX 8907685 8907834 -153692096 + MIR SINE MIR 17 162 -67 2392 163 2 0 chrX 8907871 8908264 -153691666 + L1MC3 LINE L1 7384 7777 -8 329 258 30 90 chrX 8908505 8908672 -153691258 + L2 LINE L2 3119 3275 -38 27 87 0 0 chrX 8909084 8909153 -153690777 + AT_rich Low_complexity Low_complexity 1 69 0 1417 171 97 74 chrX 8909221 8909601 -153690329 - MLT1B LTR MaLR 0 390 2 1086 197 61 9 chrX 8909692 8909905 -153690025 + MER58A DNA MER1_type 1 224 0 243 300 70 46 chrX 8909927 8910082 -153689848 - MIR SINE MIR -60 148 20 292 321 0 0 chrX 8910925 8911009 -153688921 + MLT1K LTR MaLR 159 242 -346 379 258 181 13 chrX 8911063 8911218 -153688712 + MLT1K LTR MaLR 408 588 0 2174 104 0 20 chrX 8911535 8911833 -153688097 - AluSx SINE Alu -20 292 1 423 293 90 48 chrX 8914036 8914240 -153685690 + L1MC4a LINE L1 3950 4173 -1973 2390 87 0 37 chrX 8914240 8914563 -153685367 + AluSq SINE Alu 1 311 -2 423 293 90 48 chrX 8914563 8914669 -153685261 + L1MC4a LINE L1 4173 4273 -1873 2478 153 51 36 chrX 8914724 8915174 -153684756 - MSTB2 LTR MaLR 0 457 1 1087 275 35 52 chrX 8915448 8915846 -153684084 + L1MC4a LINE L1 5461 5645 -529 269 306 78 11 chrX 8916355 8916535 -153683395 + L2 LINE L2 2189 2380 -934 1062 221 9 27 chrX 8917326 8917548 -153682382 - MER20 DNA MER1_type -1 218 1 2144 128 0 0 chrX 8917937 8918227 -153681703 - AluSg SINE Alu -20 290 1 651 301 119 10 chrX 8918702 8919025 -153680905 + L2 LINE L2 2711 3069 -244 399 301 168 0 chrX 8919036 8919179 -153680751 - MER5A DNA MER1_type -5 184 18 642 216 51 81 chrX 8919201 8919437 -153680493 + L2 LINE L2 3084 3312 -1 820 284 30 30 chrX 8921960 8922263 -153677667 - LTR16A LTR ERVL -91 359 57 925 195 127 0 chrX 8922293 8922529 -153677401 - Charlie4a DNA MER1_type -169 339 74 225 0 0 0 chrX 8923019 8923044 -153676886 + (CGG)n Simple_repeat Simple_repeat 2 26 0 1640 156 32 7 chrX 8923869 8924151 -153675779 + AluJb SINE Alu 1 289 -23 393 270 119 19 chrX 8924210 8924369 -153675561 + MIR SINE MIR 35 209 -53 1100 151 98 34 chrX 8924422 8924627 -153675303 + MER20 DNA MER1_type 1 218 -1 320 232 182 20 chrX 8925049 8925148 -153674782 - MIR SINE MIR -87 175 61 263 377 70 15 chrX 8926778 8926977 -153672953 + L3 LINE CR1 243 452 -1125 242 302 194 35 chrX 8927070 8927328 -153672602 + L3 LINE CR1 948 1246 -331 226 125 0 0 chrX 8927357 8927389 -153672541 + MER58A DNA MER1_type 37 68 -39 555 169 7 110 chrX 8927438 8927574 -153672356 - MER58B DNA MER1_type 0 341 220 826 70 0 0 chrX 8927757 8927857 -153672073 - HY3 scRNA scRNA -1 100 1 495 283 92 0 chrX 8927885 8928069 -153671861 - MIR SINE MIR -48 214 14 429 211 56 0 chrX 8928263 8928353 -153671577 + MER20 DNA MER1_type 125 219 0 1790 202 83 83 chrX 8929244 8929764 -153670166 - MLT2B1 LTR ERVL 0 520 1 699 233 233 11 chrX 8930411 8930855 -153669075 - MLT1G LTR MaLR -14 576 32 527 232 90 19 chrX 8931039 8931194 -153668736 - MER5A DNA MER1_type -1 188 23 180 255 109 76 chrX 8931831 8932015 -153667915 + L2 LINE L2 3069 3258 -14 3507 56 16 70 chrX 8934842 8935326 -153664604 + L1PA7 LINE L1 5687 6144 -10 2368 88 0 3 chrX 8935392 8935687 -153664243 - AluSg SINE Alu -16 294 1 2496 116 31 6 chrX 8936267 8936621 -153663309 + THE1B LTR MaLR 1 363 -1 463 311 97 5 chrX 8936945 8937141 -153662789 + MIR SINE MIR 47 260 -2 1733 122 0 8 chrX 8937468 8937706 -153662224 - AluSq SINE Alu -51 262 27 21 0 0 0 chrX 8937887 8937908 -153662022 + AT_rich Low_complexity Low_complexity 1 21 0 1745 84 51 8 chrX 8937971 8938208 -153661722 + L1PA13 LINE L1 5903 6149 -14 1917 165 0 0 chrX 8939244 8939535 -153660395 - AluJb SINE Alu -21 291 1 2449 142 43 10 chrX 8939933 8940348 -153659582 + L1MB8 LINE L1 5731 6159 -19 2666 39 3 0 chrX 8940371 8940678 -153659252 + AluY SINE Alu 1 308 -3 880 199 21 27 chrX 8941304 8941490 -153658440 - MER5A DNA MER1_type -3 186 2 1906 162 143 19 chrX 8941971 8942207 -153657723 - MLT1C LTR MaLR -3 464 259 273 89 0 0 chrX 8942207 8942252 -153657678 + (TG)n Simple_repeat Simple_repeat 1 45 0 1906 162 143 19 chrX 8942252 8942428 -153657502 - MLT1C LTR MaLR -208 259 1 2343 147 28 0 chrX 8943081 8943436 -153656494 - MLT1A1 LTR MaLR 0 365 1 225 235 0 44 chrX 8943691 8943759 -153656171 + MIR SINE MIR 87 151 -57 688 252 13 0 chrX 8943806 8943957 -153655973 - MER45A DNA AcHobo 0 178 26 264 127 0 0 chrX 8944128 8944183 -153655747 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 345 324 9 0 chrX 8944897 8945005 -153654925 + MIR SINE MIR 37 145 -117 421 297 103 26 chrX 8945148 8945344 -153654586 - MIR SINE MIR -12 250 41 282 320 103 0 chrX 8945758 8945855 -153654075 - L2 LINE L2 -3 3269 3163 622 126 58 211 chrX 8946578 8946801 -153653129 + MER53 DNA DNA 1 189 0 287 188 25 88 chrX 8946880 8946960 -153652970 + MER81 DNA DNA 40 114 0 2148 118 3 0 chrX 8947948 8948245 -153651685 + AluSx SINE Alu 1 298 -14 28 29 0 0 chrX 8949301 8949336 -153650594 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chrX 8949679 8949722 -153650208 + AT_rich Low_complexity Low_complexity 1 43 0 556 230 99 6 chrX 8951700 8951861 -153648069 + MLT1J2 LTR MaLR 1 176 -274 1887 64 0 9 chrX 8951879 8952112 -153647818 + AluY SINE Alu 80 310 -1 489 215 35 157 chrX 8952124 8952436 -153647494 + MLT1J2 LTR MaLR 177 450 0 21 0 0 0 chrX 8952814 8952835 -153647095 + AT_rich Low_complexity Low_complexity 1 21 0 995 167 78 29 chrX 8954175 8954557 -153645373 + MLT1D LTR MaLR 2 450 -55 219 250 239 0 chrX 8954728 8954816 -153645114 - MIR SINE MIR -7 255 147 * 289 273 122 35 chrX 8954806 8954978 -153644952 - MIR SINE MIR -1 261 75 425 307 113 18 chrX 8954978 8955182 -153644748 - MIR SINE MIR -15 247 21 361 253 32 0 chrX 8957251 8957346 -153642584 + MER5A DNA MER1_type 2 99 -90 675 228 0 0 chrX 8957346 8957482 -153642448 - MER45A DNA AcHobo 0 178 43 395 174 65 11 chrX 8957504 8957596 -153642334 + MER5A DNA MER1_type 92 188 -1 216 259 0 0 chrX 8958261 8958315 -153641615 - MIR SINE MIR 0 262 209 208 222 22 0 chrX 8958765 8958810 -153641120 + (CA)n Simple_repeat Simple_repeat 2 47 0 400 156 44 44 chrX 8958811 8958991 -153640939 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 28 29 0 0 chrX 8961595 8961630 -153638300 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chrX 8962160 8962185 -153637745 + AT_rich Low_complexity Low_complexity 1 25 0 877 102 8 0 chrX 8962344 8962462 -153637468 + AluJb SINE Alu 174 292 -20 731 216 75 9 chrX 8962502 8962715 -153637215 + MER96B DNA MER1_type? 190 416 -1 1350 180 0 16 chrX 8962920 8963165 -153636765 - AluJo SINE Alu -4 308 68 299 272 22 122 chrX 8963762 8963942 -153635988 - MIR SINE MIR -98 164 3 514 244 34 28 chrX 8964475 8964651 -153635279 + MER5B DNA MER1_type 2 178 0 620 201 169 13 chrX 8964754 8964908 -153635022 + MER5A DNA MER1_type 9 186 -3 2205 89 0 0 chrX 8964943 8965213 -153634717 + AluSg SINE Alu 36 305 -5 3659 30 0 2 chrX 8965479 8965915 -153634015 - L1PA4 LINE L1 -3 6152 5718 180 174 23 198 chrX 8966585 8966671 -153633259 + MER5B DNA MER1_type 64 134 -44 213 39 0 0 chrX 8966950 8966976 -153632954 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2023 103 0 0 chrX 8966980 8967242 -153632688 - AluSx SINE Alu -29 283 22 940 275 0 32 chrX 8968734 8968985 -153630945 + MIR SINE MIR 18 260 -2 189 371 8 24 chrX 8969487 8969611 -153630319 + L2 LINE L2 2362 2483 -831 236 299 76 42 chrX 8969805 8969949 -153629981 + MLT1K LTR MaLR 125 273 -315 356 270 88 22 chrX 8970011 8970148 -153629782 + MLT1K LTR MaLR 401 546 -42 1821 262 135 34 chrX 8970440 8971490 -153628440 - L2 LINE L2 -1 3312 2148 2485 59 0 26 chrX 8971831 8972136 -153627794 + AluY SINE Alu 1 297 -14 294 356 32 23 chrX 8973081 8973259 -153626671 + MIR SINE MIR 17 196 -66 239 208 42 0 chrX 8973657 8973705 -153626225 + L2 LINE L2 3189 3238 -75 286 290 9 37 chrX 8975410 8975517 -153624413 - L2 LINE L2 -8 3305 3202 733 304 30 23 chrX 8976843 8977109 -153622821 - L2 LINE L2 -4 3309 3042 450 333 117 9 chrX 8977169 8977400 -153622530 - MIR SINE MIR 0 262 7 456 221 77 61 chrX 8977415 8977596 -153622334 + MER5A DNA MER1_type 4 187 -2 191 365 65 9 chrX 8978381 8978488 -153621442 - MIR3 SINE MIR -4 204 92 * 195 348 43 0 chrX 8978473 8978542 -153621388 - MIR SINE MIR -171 91 20 516 260 58 98 chrX 8978774 8979170 -153620760 - L2 LINE L2 0 3313 2934 185 218 128 64 chrX 8979557 8979635 -153620295 - L2 LINE L2 -2 3311 3229 489 272 25 4 chrX 8979660 8979871 -153620059 + MLT1J2 LTR MaLR 35 332 -118 192 307 86 36 chrX 8980003 8980143 -153619787 - MIR SINE MIR -51 211 65 181 370 14 83 chrX 8980524 8980800 -153619130 - L2 LINE L2 -12 3260 3004 249 182 0 0 chrX 8981652 8981707 -153618223 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 205 303 181 61 chrX 8982464 8982824 -153617106 - L2 LINE L2 -1218 2096 1694 323 288 97 51 chrX 8982860 8983312 -153616618 - L1ME4a LINE L1 -56 6065 5593 1170 161 5 27 chrX 8983377 8983600 -153616330 - MER20 DNA MER1_type -1 218 1 180 125 0 0 chrX 8985255 8985287 -153614643 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 185 229 0 0 chrX 8985446 8985481 -153614449 - MIR SINE MIR -111 151 117 231 324 0 0 chrX 8985891 8985965 -153613965 + L2 LINE L2 2991 3064 -208 1131 88 6 17 chrX 8986170 8986351 -153613579 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2428 54 0 13 chrX 8986356 8986654 -153613276 - AluY SINE Alu -17 294 1 259 339 8 33 chrX 8987151 8987272 -153612658 - MIR SINE MIR -81 181 64 1134 128 13 66 chrX 8987280 8987506 -153612424 + MER20 DNA MER1_type 6 219 0 452 260 0 68 chrX 8987649 8987795 -153612135 - MER91B DNA MER1_type -53 137 2 252 316 71 0 chrX 8987795 8987893 -153612037 + MIR SINE MIR 81 185 -77 783 93 0 0 chrX 8987896 8988014 -153611916 + (TA)n Simple_repeat Simple_repeat 2 119 0 302 182 0 91 chrX 8991318 8991417 -153608513 - L1MC4 LINE L1 -1339 6703 6614 228 67 0 0 chrX 8991418 8991448 -153608482 + (TA)n Simple_repeat Simple_repeat 1 30 0 324 284 42 0 chrX 8992028 8992123 -153607807 - L2 LINE L2 0 3313 3215 185 259 179 36 chrX 8992623 8992735 -153607195 + MIR SINE MIR 79 206 -56 378 254 59 104 chrX 8994152 8994287 -153605643 - L1ME4a LINE L1 -7 6114 5974 1577 195 68 0 chrX 8994287 8994579 -153605351 - AluJb SINE Alu 0 312 1 378 254 59 104 chrX 8994579 8994760 -153605170 - L1ME4a LINE L1 -147 5974 5827 982 100 0 0 chrX 8994760 8994900 -153605030 + L1PB1 LINE L1 6012 6151 0 378 254 59 104 chrX 8994900 8995090 -153604840 - L1ME4a LINE L1 -294 5827 5630 595 253 50 23 chrX 8995121 8995520 -153604410 - L1MC5 LINE L1 -241 7720 7252 389 186 271 0 chrX 8995661 8995779 -153604151 + MLT1K LTR MaLR 331 480 -108 816 148 0 37 chrX 8995916 8996051 -153603879 - FLAM_C SINE Alu -13 130 1 417 257 67 0 chrX 8996340 8996445 -153603485 - MIR SINE MIR -27 235 124 1651 156 35 0 chrX 8996518 8996806 -153603124 - MER7A DNA MER2_type -48 298 3 402 21 0 0 chrX 8996806 8996853 -153603077 + (TG)n Simple_repeat Simple_repeat 2 48 0 352 251 128 56 chrX 8997006 8997201 -153602729 + L1ME4a LINE L1 5910 6118 -3 1438 255 68 34 chrX 8998527 8999001 -153600929 - LTR16C LTR ERVL -1 490 1 1711 161 58 10 chrX 8999427 8999719 -153600211 + AluJb SINE Alu 1 306 -6 220 200 67 67 chrX 8999997 9000087 -153599843 - L2 LINE L2 -41 3231 3142 378 326 34 71 chrX 9000900 9001194 -153598736 - L2 LINE L2 0 3272 2990 384 181 0 0 chrX 9002124 9002207 -153597723 + (TA)n Simple_repeat Simple_repeat 2 84 0 376 36 107 0 chrX 9002778 9002834 -153597096 - MER58A DNA MER1_type -6 218 157 284 305 102 0 chrX 9002850 9002978 -153596952 + MER96 DNA MER1_type? 35 175 0 641 197 8 0 chrX 9002989 9003111 -153596819 - MER58A DNA MER1_type 0 159 37 869 341 118 24 chrX 9003131 9004047 -153595883 + L2 LINE L2 1612 2613 -701 23 33 0 0 chrX 9004538 9004568 -153595362 + AT_rich Low_complexity Low_complexity 1 30 0 373 309 58 14 chrX 9006046 9006185 -153593745 + MER5B DNA MER1_type 34 178 0 771 174 99 0 chrX 9006219 9006380 -153593550 + MER20 DNA MER1_type 40 216 -3 2274 107 0 0 chrX 9006741 9007039 -153592891 + AluSg SINE Alu 7 304 -6 1594 124 12 0 chrX 9007250 9007492 -153592438 + L1PA15 LINE L1 5917 6161 -4 2067 86 0 63 chrX 9007497 9007843 -153592087 + AluY SINE Alu 1 327 0 498 251 230 11 chrX 9009065 9009252 -153590678 + MIR SINE MIR 3 230 -32 332 232 62 0 chrX 9009278 9009390 -153590540 - L1ME LINE L1 -322 5799 5681 775 241 31 27 chrX 9010661 9010955 -153588975 - L1ME3A LINE L1 -222 5948 5654 915 222 6 11 chrX 9010962 9011142 -153588788 + MER5A DNA MER1_type 1 179 -10 321 309 79 8 chrX 9011168 9011294 -153588636 - L1ME3A LINE L1 -514 5656 5522 669 232 19 39 chrX 9012574 9012781 -153587149 + L1ME3 LINE L1 5957 6159 -3 540 320 69 5 chrX 9012974 9013177 -153586753 - MIR SINE MIR 0 262 47 2370 112 19 16 chrX 9013203 9013577 -153586353 - THE1C LTR MaLR 0 375 1 513 0 0 0 chrX 9013653 9013710 -153586220 + (TG)n Simple_repeat Simple_repeat 2 58 0 2185 120 27 0 chrX 9014193 9014493 -153585437 + AluSx SINE Alu 5 312 0 642 297 68 4 chrX 9014541 9014777 -153585153 + MIR SINE MIR 2 252 -10 243 273 40 30 chrX 9014924 9015023 -153584907 + Charlie2 DNA MER1_type 1 100 -2762 232 325 61 9 chrX 9015987 9016101 -153583829 + MIR3 SINE MIR 44 163 -45 188 189 54 0 chrX 9016112 9016149 -153583781 + L2 LINE L2 3265 3303 -10 262 372 126 25 chrX 9016175 9016621 -153583309 + L2 LINE L2 2175 2665 -649 913 180 62 24 chrX 9016896 9017107 -153582823 - MER20 DNA MER1_type 0 219 1 186 375 0 14 chrX 9017555 9017627 -153582303 + L2 LINE L2 3241 3311 -2 840 145 8 8 chrX 9018860 9018991 -153580939 - FLAM_C SINE Alu -2 131 1 1888 167 57 18 chrX 9020159 9020542 -153579388 + MER77 LTR ERV1 2 399 -206 1979 144 0 10 chrX 9020810 9021108 -153578822 - AluSx SINE Alu -17 295 1 2385 49 3 29 chrX 9022886 9023193 -153576737 - AluY SINE Alu -12 299 1 2148 113 3 0 chrX 9023204 9023504 -153576426 - AluSg SINE Alu -9 301 1 39 22 0 0 chrX 9024455 9024501 -153575429 + AT_rich Low_complexity Low_complexity 1 46 0 2931 148 40 4 chrX 9025035 9025555 -153574375 + L1PB4 LINE L1 5614 6152 -4 243 0 0 0 chrX 9025921 9025948 -153573982 + (CA)n Simple_repeat Simple_repeat 1 27 0 340 270 105 127 chrX 9026483 9027120 -153572810 - L1M2 LINE L1 -5760 1089 467 1550 138 5 0 chrX 9028035 9028252 -153571678 + AluSx SINE Alu 1 218 -94 7096 52 9 0 chrX 9028378 9030045 -153569885 - L1PA7 LINE L1 0 6154 4480 3208 116 0 0 chrX 9030046 9030548 -153569382 - L1PA7 LINE L1 -2415 3731 3230 7872 14 0 0 chrX 9030552 9031944 -153567986 - L1PA2 LINE L1 -2 6153 4762 6397 37 0 0 chrX 9031944 9032763 -153567167 + L1P LINE L1 1636 2454 -3692 1345 117 4 0 chrX 9032761 9032991 -153566939 - L1PA7 LINE L1 -2919 3227 2997 * 1260 95 8 104 chrX 9033372 9033613 -153566317 - L1PA15 LINE L1 -6 6159 5942 387 282 160 27 chrX 9036131 9036500 -153563430 - L2 LINE L2 -2025 1289 872 709 245 50 9 chrX 9036518 9036729 -153563201 + MIR SINE MIR 2 213 -49 609 242 12 6 chrX 9036804 9036965 -153562965 - L2 LINE L2 -2475 839 678 3251 48 22 0 chrX 9037665 9038082 -153561848 - L1PA5 LINE L1 -1 6153 5728 207 100 0 0 chrX 9039447 9039477 -153560453 + (T)n Simple_repeat Simple_repeat 1 30 0 2395 81 0 13 chrX 9041852 9042159 -153557771 - AluSc SINE Alu -6 303 1 420 222 21 14 chrX 9042274 9042418 -153557512 + (TATG)n Simple_repeat Simple_repeat 1 145 0 1075 159 29 10 chrX 9042439 9042646 -153557284 - L1MC1 LINE L1 -10 6323 6113 189 314 161 8 chrX 9043492 9043610 -153556320 + MIR SINE MIR 125 260 -2 1655 160 57 3 chrX 9043629 9043961 -153555969 - L1MA4 LINE L1 -6 6294 5945 2271 99 0 37 chrX 9044002 9044326 -153555604 + AluSx SINE Alu 1 312 0 219 36 0 0 chrX 9046156 9046184 -153553746 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1707 177 9 14 chrX 9046306 9046656 -153553274 + L1MC2 LINE L1 5589 5936 -408 * 6386 98 42 59 chrX 9046651 9047734 -153552196 - THE1C-int LTR MaLR -514 1066 2 2497 102 19 13 chrX 9047735 9048108 -153551822 - THE1C LTR MaLR 0 375 1 191 299 58 0 chrX 9048151 9048238 -153551692 - MIR SINE MIR -63 145 54 337 302 31 16 chrX 9048337 9048466 -153551464 - MIR SINE MIR -83 179 49 378 215 82 30 chrX 9049016 9049151 -153550779 + Charlie8 DNA MER1_type 56 197 -2220 980 211 33 5 chrX 9049518 9049731 -153550199 - MER20 DNA MER1_type 0 219 1 291 285 90 50 chrX 9050069 9050269 -153549661 + L3 LINE CR1 1147 1354 -223 614 197 131 27 chrX 9050417 9050600 -153549330 + MLT1F1 LTR MaLR 316 517 -50 802 176 10 137 chrX 9050617 9050924 -153549006 + L1MC3 LINE L1 7503 7770 -15 322 282 0 0 chrX 9050939 9051017 -153548913 + L3 LINE CR1 1436 1513 -64 21 36 0 0 chrX 9051429 9051457 -153548473 + AT_rich Low_complexity Low_complexity 1 28 0 248 357 83 0 chrX 9052317 9052401 -153547529 - L2 LINE L2 -49 3223 3133 1722 140 15 4 chrX 9052426 9052600 -153547330 + AluJb SINE Alu 1 181 -131 207 0 0 0 chrX 9052600 9052623 -153547307 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 1722 140 15 4 chrX 9052623 9052713 -153547217 + AluJb SINE Alu 181 268 -44 426 39 0 0 chrX 9053195 9053247 -153546683 + (TG)n Simple_repeat Simple_repeat 2 53 0 242 242 0 76 chrX 9054717 9054783 -153545147 - L2 LINE L2 -6 3266 3206 232 273 81 20 chrX 9055003 9055102 -153544828 + MLT1L LTR MaLR 145 249 -366 1681 144 24 94 chrX 9055321 9055695 -153544235 + Tigger3(Golem) DNA MER2_type 1 3028 -1 1005 211 33 9 chrX 9055865 9056078 -153543852 - MER58A DNA MER1_type -1 223 6 226 210 0 65 chrX 9057422 9057484 -153542446 - MER112 DNA MER1_type -186 74 17 207 100 0 0 chrX 9057863 9057893 -153542037 + (ATG)n Simple_repeat Simple_repeat 1 30 0 297 279 0 0 chrX 9057900 9057986 -153541944 - MIR SINE MIR -14 248 163 825 196 131 5 chrX 9059131 9059330 -153540600 - MER58A DNA MER1_type 0 224 1 474 192 20 68 chrX 9059799 9059945 -153539985 + MLT1J2 LTR MaLR 264 402 -48 542 242 150 55 chrX 9059966 9060043 -153539887 - L1MC/D LINE L1 -601 5563 5495 6278 91 2 6 chrX 9060043 9061093 -153538837 + L1PB1 LINE L1 5104 6150 -1 542 242 150 55 chrX 9061093 9061386 -153538544 - L1MC/D LINE L1 -669 5495 5282 1078 300 96 43 chrX 9061988 9062054 -153537876 + L2 LINE L2 996 1057 -2257 2523 174 22 24 chrX 9062054 9062560 -153537370 - MLT1D LTR MaLR 0 505 1 1078 300 96 43 chrX 9062560 9063147 -153536783 + L2 LINE L2 1057 1684 -1630 183 339 25 25 chrX 9064550 9064668 -153535262 - MIR3 SINE MIR -82 126 9 903 182 11 32 chrX 9064759 9064946 -153534984 - MER20 DNA MER1_type -34 185 3 191 204 20 0 chrX 9064955 9065004 -153534926 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 2266 107 0 17 chrX 9065283 9065582 -153534348 + AluSc SINE Alu 1 294 -15 198 0 0 0 chrX 9066380 9066402 -153533528 + (A)n Simple_repeat Simple_repeat 1 22 0 735 145 88 36 chrX 9066795 9066988 -153532942 - L1MA5A LINE L1 -2 6295 6093 183 146 0 0 chrX 9067062 9067103 -153532827 + (TATAA)n Simple_repeat Simple_repeat 2 42 0 326 354 0 39 chrX 9067161 9067291 -153532639 - MIR SINE MIR -125 137 13 2266 104 3 0 chrX 9067773 9068070 -153531860 + AluSq SINE Alu 3 300 -13 348 306 69 12 chrX 9068259 9068432 -153531498 - L2 LINE L2 -112 3201 3019 21 0 0 0 chrX 9068800 9068821 -153531109 + AT_rich Low_complexity Low_complexity 1 21 0 1017 219 23 5 chrX 9068982 9069197 -153530733 - MER58A DNA MER1_type -1 223 5 441 324 161 51 chrX 9069274 9070128 -153529802 - L2 LINE L2 -1 3271 2342 3730 80 11 7 chrX 9070508 9071047 -153528883 - L1MA1 LINE L1 0 6302 5762 261 226 19 0 chrX 9071050 9071103 -153528827 + MER5B DNA MER1_type 125 178 0 1843 175 140 37 chrX 9071521 9071979 -153527951 + MLT1D LTR MaLR 1 505 0 1168 214 72 3 chrX 9072206 9072496 -153527434 - MER58B DNA MER1_type -31 310 1 406 320 0 0 chrX 9072606 9072706 -153527224 + L2 LINE L2 3201 3300 -13 931 219 10 0 chrX 9073417 9073618 -153526312 + MER20 DNA MER1_type 17 219 0 23 68 0 0 chrX 9073685 9073729 -153526201 + AT_rich Low_complexity Low_complexity 1 44 0 208 286 20 92 chrX 9074345 9074443 -153525487 + MER5B DNA MER1_type 88 178 0 222 336 35 0 chrX 9074482 9074595 -153525335 + MIR SINE MIR 90 206 -56 2337 175 21 14 chrX 9074696 9075119 -153524811 + MSTB LTR MaLR 1 426 0 203 323 140 11 chrX 9075172 9075358 -153524572 - L2 LINE L2 -151 3162 2953 654 263 0 31 chrX 9075374 9075534 -153524396 + MIR SINE MIR 1 155 -107 720 196 27 91 chrX 9075559 9075778 -153524152 + MER58A DNA MER1_type 20 224 0 1036 224 25 8 chrX 9076446 9076683 -153523247 - MIR SINE MIR -11 251 11 21 0 0 0 chrX 9077428 9077449 -153522481 + AT_rich Low_complexity Low_complexity 1 21 0 456 99 0 0 chrX 9077666 9077737 -153522193 + (TG)n Simple_repeat Simple_repeat 1 71 0 315 49 0 0 chrX 9077736 9077777 -153522153 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 844 287 0 0 chrX 9078952 9079147 -153520783 - MIR SINE MIR -17 245 51 197 316 26 26 chrX 9079885 9079961 -153519969 + L2 LINE L2 2712 2787 -527 684 264 0 0 chrX 9080171 9080334 -153519596 + MLT1J1 LTR MaLR 16 178 -268 322 287 64 37 chrX 9080420 9080608 -153519322 + MLT1H LTR MaLR 108 300 -249 646 260 6 40 chrX 9081715 9081888 -153518042 - MIR SINE MIR -91 171 5 605 234 10 83 chrX 9083626 9083711 -153516219 + MER5B DNA MER1_type 1 66 -112 819 255 5 0 chrX 9083711 9083919 -153516011 + MER3 DNA MER1_type 1 209 0 605 234 10 83 chrX 9083919 9084025 -153515905 + MER5B DNA MER1_type 66 178 0 385 277 106 0 chrX 9084537 9084678 -153515252 + MIR SINE MIR 5 160 -102 34 0 0 0 chrX 9084948 9084982 -153514948 + AT_rich Low_complexity Low_complexity 1 34 0 828 296 24 8 chrX 9085501 9085754 -153514176 - MIR SINE MIR -3 259 3 1061 153 6 0 chrX 9085985 9086162 -153513768 + MER58A DNA MER1_type 45 222 -2 1619 66 14 0 chrX 9086285 9086498 -153513432 - L1PA10 LINE L1 -1 6167 5952 2861 147 31 13 chrX 9088543 9089087 -153510843 - L1MB7 LINE L1 -22 6162 5609 23 0 0 0 chrX 9089363 9089386 -153510544 + AT_rich Low_complexity Low_complexity 1 23 0 1780 202 81 28 chrX 9089805 9090272 -153509658 + MLT1D LTR MaLR 4 535 -7 24 0 0 0 chrX 9090504 9090528 -153509402 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 9091324 9091346 -153508584 + AT_rich Low_complexity Low_complexity 1 22 0 681 237 60 44 chrX 9091355 9091604 -153508326 - MIR SINE MIR -2 260 8 1100 180 33 0 chrX 9091605 9091816 -153508114 + MER20 DNA MER1_type 2 219 0 1068 162 0 6 chrX 9092262 9092429 -153507501 + FRAM SINE Alu 1 166 -10 301 239 92 0 chrX 9092459 9092568 -153507362 + L1MC4a LINE L1 5609 5727 -2081 1770 226 57 11 chrX 9092587 9093065 -153506865 + L1ME3A LINE L1 5651 6150 -20 41 21 0 0 chrX 9093072 9093120 -153506810 + AT_rich Low_complexity Low_complexity 1 48 0 458 294 18 0 chrX 9093149 9093312 -153506618 + L1MC4a LINE L1 5732 5897 -1911 181 302 16 16 chrX 9094024 9094087 -153505843 - L2 LINE L2 -6 3266 3204 368 290 32 24 chrX 9094274 9094398 -153505532 + MER5B DNA MER1_type 54 178 0 353 274 0 19 chrX 9094398 9094504 -153505426 + MER5B DNA MER1_type 75 178 0 321 274 28 28 chrX 9094675 9094781 -153505149 - MIR SINE MIR -47 215 110 265 349 31 23 chrX 9094868 9094997 -153504933 - L2 LINE L2 -7 3306 3177 192 280 20 110 chrX 9094986 9095086 -153504844 + L3 LINE CR1 1462 1552 -25 * 2062 177 64 48 chrX 9095128 9095625 -153504305 + MLT1D LTR MaLR 1 505 0 194 278 41 82 chrX 9095717 9095814 -153504116 + MER5A DNA MER1_type 73 165 -24 1025 158 10 46 chrX 9095819 9096015 -153503915 - MER5A DNA MER1_type 0 189 1 1269 198 5 0 chrX 9096400 9096617 -153503313 - MER20 DNA MER1_type 0 219 2 771 41 0 0 chrX 9097867 9097964 -153501966 - L1PB1 LINE L1 -2 6149 6053 696 188 111 68 chrX 9098240 9098447 -153501483 + MER20 DNA MER1_type 3 218 -1 1065 192 32 46 chrX 9098478 9098759 -153501171 + L1MB8 LINE L1 5899 6175 -3 318 311 211 36 chrX 9099540 9099952 -153499978 + L2 LINE L2 2823 3306 -7 180 171 29 0 chrX 9099936 9099971 -153499959 + MIR SINE MIR 193 228 -34 * 2187 148 11 3 chrX 9100160 9100525 -153499405 - L1MB7 LINE L1 -19 6165 5798 2224 111 0 0 chrX 9101368 9101666 -153498264 + AluSg SINE Alu 1 298 -12 220 309 0 15 chrX 9101950 9102018 -153497912 - L2 LINE L2 -1 3312 3246 467 235 0 0 chrX 9103695 9103793 -153496137 - MIR SINE MIR -69 193 96 25 0 0 0 chrX 9105367 9105392 -153494538 + AT_rich Low_complexity Low_complexity 1 25 0 203 0 37 0 chrX 9105502 9105529 -153494401 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 392 302 7 50 chrX 9106637 9106776 -153493154 - MER5A DNA MER1_type -28 161 29 187 173 200 0 chrX 9107256 9107331 -153492599 + L2 LINE L2 2440 2529 -785 274 296 28 0 chrX 9108364 9108435 -153491495 + polypyrimidine Low_complexity Low_complexity 4 76 0 226 330 0 50 chrX 9108781 9108881 -153491049 + MIR3 SINE MIR 112 206 -2 508 252 19 56 chrX 9108928 9109154 -153490776 + MIR SINE MIR 2 212 -50 442 324 52 6 chrX 9109571 9109744 -153490186 + MIR SINE MIR 72 252 -10 198 368 53 18 chrX 9111461 9111575 -153488355 + MIR SINE MIR 35 152 -110 250 304 155 41 chrX 9111811 9112005 -153487925 + MIR SINE MIR 13 228 -34 21 0 0 0 chrX 9112038 9112059 -153487871 + AT_rich Low_complexity Low_complexity 1 21 0 286 287 147 13 chrX 9113362 9113519 -153486411 - L2 LINE L2 -16 3297 3120 1055 172 29 10 chrX 9113730 9113934 -153485996 - MER3 DNA MER1_type -1 208 1 357 333 57 14 chrX 9115411 9115552 -153484378 + MIR SINE MIR 8 154 -108 2333 107 0 0 chrX 9115754 9116053 -153483877 - AluSx SINE Alu -13 299 1 2220 104 7 10 chrX 9116441 9116749 -153483181 - AluSc SINE Alu -2 307 1 302 213 0 0 chrX 9116775 9116836 -153483094 + MER20 DNA MER1_type 2 62 -157 433 100 50 0 chrX 9116963 9117043 -153482887 + L1PB4 LINE L1 6073 6156 0 509 180 86 23 chrX 9118123 9118251 -153481679 - MIR SINE MIR 0 262 127 180 295 62 54 chrX 9120337 9120449 -153479481 + MIR3 SINE MIR 82 194 -14 2647 159 98 23 chrX 9121315 9121546 -153478384 + L1MB7 LINE L1 5216 5428 -756 1890 148 0 30 chrX 9121546 9121844 -153478086 + AluJb SINE Alu 14 302 -10 2647 159 98 23 chrX 9121844 9122263 -153477667 + L1MB7 LINE L1 5428 5905 -279 22 0 0 0 chrX 9122953 9122975 -153476955 + AT_rich Low_complexity Low_complexity 1 22 0 369 333 24 19 chrX 9124067 9124274 -153475656 + L2 LINE L2 2199 2406 -908 532 397 28 14 chrX 9124378 9124668 -153475262 + L2 LINE L2 2411 2704 -610 666 243 51 6 chrX 9124709 9124886 -153475044 - MIR SINE MIR -69 193 9 709 309 100 54 chrX 9124936 9125467 -153474463 + L2 LINE L2 2735 3312 -1 234 350 77 26 chrX 9125983 9126100 -153473830 + MER5A DNA MER1_type 62 184 -5 727 62 0 0 chrX 9126231 9126327 -153473603 - L1PA13 LINE L1 -283 5880 5785 2131 72 17 3 chrX 9126327 9126616 -153473314 + L1PA13 LINE L1 5868 6163 0 1833 128 55 27 chrX 9126847 9127176 -153472754 - MER1B DNA MER1_type -1 338 1 1117 281 200 13 chrX 9127392 9127847 -153472083 + L2 LINE L2 2078 2617 -697 2810 127 8 20 chrX 9128093 9128581 -153471349 - L1MA8 LINE L1 -10 6281 5800 986 161 62 0 chrX 9128880 9129072 -153470858 - MER20 DNA MER1_type -14 205 2 191 227 0 0 chrX 9129481 9129525 -153470405 - MIR3 SINE MIR -3 205 162 589 63 13 0 chrX 9130274 9130353 -153469577 + MADE1 DNA Mariner 1 80 0 341 301 0 0 chrX 9130794 9130974 -153468956 + (TA)n Simple_repeat Simple_repeat 1 180 0 1141 167 11 0 chrX 9130980 9131166 -153468764 - MER5A DNA MER1_type -1 188 1 25 51 0 0 chrX 9131336 9131375 -153468555 + AT_rich Low_complexity Low_complexity 1 39 0 551 232 7 0 chrX 9132430 9132585 -153467345 + (CA)n Simple_repeat Simple_repeat 2 157 0 229 29 0 0 chrX 9133477 9133512 -153466418 + L1MA3 LINE L1 6271 6305 0 739 174 111 53 chrX 9133812 9134019 -153465911 - MER20 DNA MER1_type 0 219 1 2020 105 0 4 chrX 9134027 9134285 -153465645 - AluSq SINE Alu -18 295 39 8114 106 39 19 chrX 9134902 9135246 -153464684 + HSMAR2 DNA Mariner 2 338 -964 2340 106 3 6 chrX 9135246 9135558 -153464372 + AluSq SINE Alu 1 311 -2 8114 106 39 19 chrX 9135558 9136487 -153463443 + HSMAR2 DNA Mariner 338 1301 -1 2600 14 0 0 chrX 9136526 9136810 -153463120 - AluYb8 SINE Alu -23 295 12 1208 190 9 0 chrX 9137436 9137652 -153462278 + MER20 DNA MER1_type 2 219 0 2476 90 3 0 chrX 9137779 9138091 -153461839 - AluSp SINE Alu 0 313 1 21 36 0 0 chrX 9138538 9138566 -153461364 + AT_rich Low_complexity Low_complexity 1 28 0 250 231 150 75 chrX 9140015 9140188 -153459742 + MIR SINE MIR 35 220 -42 270 171 289 0 chrX 9141239 9141315 -153458615 - MER7A DNA MER2_type 0 336 239 1539 123 73 0 chrX 9141407 9141668 -153458262 - MER7A DNA MER2_type -68 278 1 191 283 0 0 chrX 9141732 9141785 -153458145 - MIR SINE MIR -3 259 207 979 190 78 25 chrX 9141811 9142095 -153457835 + L1MA7 LINE L1 5982 6280 -11 430 278 166 12 chrX 9142255 9142424 -153457506 - MIR SINE MIR -10 252 58 3483 139 54 27 chrX 9142585 9143217 -153456713 + MER39B LTR ERV1 1 649 -4 1840 182 25 37 chrX 9144249 9144655 -153455275 - L1MD2 LINE L1 -3 6356 5956 2748 94 11 3 chrX 9144837 9145209 -153454721 + THE1C LTR MaLR 1 375 0 3323 76 0 0 chrX 9146891 9147324 -153452606 - L1PA7 LINE L1 -6 6148 5716 37 23 0 0 chrX 9147791 9147835 -153452095 + AT_rich Low_complexity Low_complexity 1 44 0 313 247 0 0 chrX 9148316 9148393 -153451537 + MER116 DNA Mariner 4 80 0 285 183 61 17 chrX 9148836 9148951 -153450979 + (TA)n Simple_repeat Simple_repeat 1 120 0 186 270 70 120 chrX 9149265 9149365 -153450565 - L2 LINE L2 -35 3237 3143 2031 184 31 33 chrX 9149421 9149877 -153450053 - MSTB2 LTR MaLR 0 457 3 203 300 64 36 chrX 9150103 9150213 -153449717 - MIR SINE MIR -58 204 92 371 369 51 24 chrX 9150295 9150669 -153449261 + L2 LINE L2 1775 2158 -1156 406 274 32 24 chrX 9150719 9150843 -153449087 + L2 LINE L2 3186 3310 -3 36 62 0 0 chrX 9151272 9151336 -153448594 + AT_rich Low_complexity Low_complexity 1 64 0 887 296 112 51 chrX 9151342 9152111 -153447819 + L2 LINE L2 2225 3120 -193 2485 48 0 0 chrX 9152111 9152404 -153447526 + AluY SINE Alu 1 293 -18 887 296 112 51 chrX 9152404 9152610 -153447320 + L2 LINE L2 3120 3312 -1 694 245 10 16 chrX 9152646 9152718 -153447212 + L1ME1 LINE L1 5959 6030 -136 183 42 0 0 chrX 9152718 9152742 -153447188 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 694 245 10 16 chrX 9152742 9152861 -153447069 + L1ME1 LINE L1 6030 6149 -17 22 0 0 0 chrX 9152861 9152883 -153447047 + AT_rich Low_complexity Low_complexity 1 22 0 796 263 11 0 chrX 9155234 9155420 -153444510 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chrX 9155670 9155691 -153444239 + AT_rich Low_complexity Low_complexity 1 21 0 977 158 94 10 chrX 9155791 9155993 -153443937 - MER20 DNA MER1_type 0 219 1 262 243 105 144 chrX 9156007 9156054 -153443876 - MER5B DNA MER1_type -4 174 127 2457 82 0 16 chrX 9156054 9156372 -153443558 + AluSq SINE Alu 1 313 0 262 243 105 144 chrX 9156372 9156505 -153443425 - MER5B DNA MER1_type -51 127 1 772 161 0 15 chrX 9157632 9157762 -153442168 - FLAM_A SINE Alu -4 129 2 1093 215 9 0 chrX 9157861 9158080 -153441850 + MER58A DNA MER1_type 2 222 -2 1650 167 32 0 chrX 9158121 9158442 -153441488 + AluJb SINE Alu 23 352 0 324 0 0 0 chrX 9158586 9158622 -153441308 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1359 167 34 30 chrX 9160305 9160574 -153439356 - AluJo SINE Alu -4 308 39 668 266 5 29 chrX 9160991 9161198 -153438732 + L2 LINE L2 3112 3313 0 367 300 54 8 chrX 9161558 9161688 -153438242 + MIR SINE MIR 56 191 -71 354 249 20 9 chrX 9161745 9161857 -153438073 + MIR3 SINE MIR 68 184 -24 393 75 0 0 chrX 9162711 9162764 -153437166 + (CA)n Simple_repeat Simple_repeat 2 54 0 208 180 0 33 chrX 9164543 9164604 -153435326 + (TA)n Simple_repeat Simple_repeat 1 59 0 438 20 0 0 chrX 9165213 9165264 -153434666 + (TG)n Simple_repeat Simple_repeat 1 51 0 304 275 12 0 chrX 9165848 9165928 -153434002 + MIR SINE MIR 157 237 -25 537 16 0 0 chrX 9165930 9165992 -153433938 + (TC)n Simple_repeat Simple_repeat 2 63 0 261 0 0 0 chrX 9165991 9166020 -153433910 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 294 206 0 0 chrX 9166022 9166095 -153433835 + (CAT)n Simple_repeat Simple_repeat 3 75 0 877 358 86 49 chrX 9166302 9167404 -153432526 + L3 LINE CR1 418 1560 -17 2101 50 4 0 chrX 9167838 9168099 -153431831 + L1PA8 LINE L1 5904 6165 -7 2790 171 46 2 chrX 9169547 9170092 -153429838 - L1MB7 LINE L1 -19 6165 5597 543 31 0 0 chrX 9170095 9170160 -153429770 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 2132 102 0 7 chrX 9170162 9170445 -153429485 - AluSp SINE Alu -32 281 1 19109 30 0 0 chrX 9171265 9174339 -153425591 + L1PA3 LINE L1 3085 6162 0 4293 110 5 3 chrX 9175416 9176036 -153423894 + L1PA15 LINE L1 5545 6165 0 195 267 0 0 chrX 9176049 9176094 -153423836 + MIR SINE MIR 66 110 -152 347 301 29 43 chrX 9176097 9176306 -153423624 + MLT1L LTR MaLR 3 208 -407 460 257 198 32 chrX 9176698 9177036 -153422894 + MLT1L LTR MaLR 204 597 -18 222 277 53 43 chrX 9177395 9177489 -153422441 + MIR SINE MIR 50 144 -118 1560 147 34 54 chrX 9177526 9177852 -153422078 - MLT1A2 LTR MaLR -57 339 4 294 336 155 27 chrX 9178532 9178976 -153420954 - L2 LINE L2 -1108 2206 1706 208 293 12 49 chrX 9179694 9179776 -153420154 - L2 LINE L2 0 3272 3194 235 305 24 24 chrX 9180400 9180482 -153419448 + L2 LINE L2 3186 3267 -5 482 254 9 0 chrX 9180611 9180721 -153419209 - MER94 DNA DNA -3 131 21 255 31 0 0 chrX 9180830 9180862 -153419068 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 186 198 504 33 chrX 9180945 9181066 -153418864 - MER5A DNA MER1_type -3 186 9 547 320 57 12 chrX 9181124 9181368 -153418562 + MIR SINE MIR 1 255 -7 279 0 0 0 chrX 9182557 9182588 -153417342 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1097 191 48 0 chrX 9182914 9183103 -153416827 + MER58A DNA MER1_type 1 198 -26 2470 75 0 0 chrX 9184159 9184465 -153415465 + AluY SINE Alu 6 311 0 29 59 0 15 chrX 9184700 9184743 -153415187 + AT_rich Low_complexity Low_complexity 1 44 -23 345 24 0 0 chrX 9184743 9184785 -153415145 + (CA)n Simple_repeat Simple_repeat 1 42 0 29 59 0 15 chrX 9184785 9184809 -153415121 + AT_rich Low_complexity Low_complexity 44 67 0 309 207 0 0 chrX 9186074 9186132 -153413798 - MER3 DNA MER1_type -151 58 1 485 256 218 31 chrX 9186477 9186766 -153413164 + L2 LINE L2 2967 3309 -4 200 315 7 21 chrX 9187604 9187747 -153412183 + A-rich Low_complexity Low_complexity 2 142 0 1898 212 44 40 chrX 9187844 9188339 -153411591 + MLT1D LTR MaLR 8 504 -1 197 250 47 31 chrX 9188858 9188922 -153411008 + L2 LINE L2 3249 3313 0 1735 142 6 13 chrX 9188933 9189249 -153410681 + L1MB8 LINE L1 5862 6175 -3 588 217 0 0 chrX 9189877 9190020 -153409910 - L1MB7 LINE L1 -9 6175 6033 684 255 122 57 chrX 9190707 9191060 -153408870 - MLT1H LTR MaLR -173 376 1 789 220 16 0 chrX 9192183 9192369 -153407561 - MER5A DNA MER1_type 0 189 1 1096 151 80 0 chrX 9192381 9192580 -153407350 - MER20 DNA MER1_type -4 215 1 237 281 0 0 chrX 9193695 9193791 -153406139 + (ATGGTG)n Simple_repeat Simple_repeat 3 98 0 24 0 0 0 chrX 9194030 9194054 -153405876 + AT_rich Low_complexity Low_complexity 1 24 0 489 279 72 36 chrX 9195862 9196084 -153403846 + L1MC4 LINE L1 6771 7000 -1042 680 235 41 12 chrX 9196318 9196488 -153403442 + MER5B DNA MER1_type 4 178 0 468 208 85 19 chrX 9196498 9196604 -153403326 - MER81 DNA DNA 0 114 2 212 324 18 12 chrX 9196943 9197113 -153402817 + (TAA)n Simple_repeat Simple_repeat 3 173 0 605 225 59 6 chrX 9198863 9199032 -153400898 + MER5B DNA MER1_type 1 178 0 7543 30 12 0 chrX 9199222 9200450 -153399480 - L1PA4 LINE L1 -6 6149 4916 903 231 42 9 chrX 9200677 9200889 -153399041 + MER20 DNA MER1_type 1 219 0 3041 43 0 0 chrX 9201664 9202035 -153397895 - L1PA5 LINE L1 -1067 5079 4709 7268 48 0 0 chrX 9202036 9203140 -153396790 + L1PA5 LINE L1 5051 6154 0 337 188 27 181 chrX 9203279 9203428 -153396502 + MER5B DNA MER1_type 1 126 -52 299 255 10 146 chrX 9203438 9203630 -153396300 - MER5A DNA MER1_type -7 182 6 186 288 63 9 chrX 9203889 9204000 -153395930 + L2 LINE L2 2922 3038 -275 263 344 179 0 chrX 9204277 9204428 -153395502 - MIR SINE MIR -65 197 20 193 222 44 0 chrX 9205035 9205080 -153394850 - MIR SINE MIR -4 258 212 474 318 92 18 chrX 9205252 9205469 -153394461 - MIR SINE MIR -11 251 19 1481 181 29 29 chrX 9205880 9206223 -153393707 + L1MB8 LINE L1 5835 6177 -1 779 235 68 0 chrX 9206530 9206692 -153393238 - MER45A DNA AcHobo 0 178 6 828 250 55 5 chrX 9207071 9207271 -153392659 + MER63A DNA MER1_type 1 210 0 233 259 19 0 chrX 9208179 9208233 -153391697 - L2 LINE L2 -4 3309 3255 183 184 0 0 chrX 9208598 9208636 -153391294 + (CA)n Simple_repeat Simple_repeat 2 39 0 234 216 65 22 chrX 9209036 9209175 -153390755 + (TA)n Simple_repeat Simple_repeat 1 145 0 1762 156 9 37 chrX 9209260 9209581 -153390349 + AluJb SINE Alu 1 312 0 662 232 79 0 chrX 9209760 9209924 -153390006 + MIR SINE MIR 76 252 -10 204 40 0 0 chrX 9209926 9209951 -153389979 + (A)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chrX 9211018 9211041 -153388889 + (A)n Simple_repeat Simple_repeat 1 23 0 320 68 0 0 chrX 9211224 9211268 -153388662 + MADE1 DNA Mariner 3 46 -34 3501 140 29 16 chrX 9211277 9211904 -153388026 + L1MB7 LINE L1 5531 6165 -19 231 336 71 14 chrX 9211930 9212070 -153387860 - L2 LINE L2 -176 3096 2949 201 304 25 25 chrX 9212820 9212899 -153387031 - L3 LINE CR1 -3 1574 1496 1055 130 17 122 chrX 9213068 9213306 -153386624 - MER20 DNA MER1_type -4 215 3 334 350 109 0 chrX 9213642 9213825 -153386105 - MIR SINE MIR -28 234 32 1194 168 91 27 chrX 9214992 9215290 -153384640 + MER33 DNA MER1_type 7 323 -1 21 0 0 0 chrX 9216370 9216391 -153383539 + AT_rich Low_complexity Low_complexity 1 21 0 499 309 55 59 chrX 9217431 9217581 -153382349 + MIR SINE MIR 23 173 -89 1730 157 36 4 chrX 9217581 9217862 -153382068 - AluJb SINE Alu -22 290 1 499 309 55 59 chrX 9217862 9217931 -153381999 + MIR SINE MIR 173 241 -21 217 118 39 0 chrX 9218137 9218188 -153381742 + (CA)n Simple_repeat Simple_repeat 2 54 0 4052 161 17 20 chrX 9218632 9219450 -153380480 - L1MB8 LINE L1 -1 6177 5362 405 58 0 0 chrX 9220555 9220607 -153379323 + (CA)n Simple_repeat Simple_repeat 1 52 0 191 300 86 50 chrX 9220623 9220843 -153379087 + L2 LINE L2 2730 2957 -357 3566 167 15 46 chrX 9221423 9221490 -153378440 + L1MB7 LINE L1 5417 5485 -699 634 252 0 0 chrX 9221490 9221609 -153378321 + FLAM_A SINE Alu 1 119 -14 3566 167 15 46 chrX 9221609 9222318 -153377612 + L1MB7 LINE L1 5485 6169 -15 330 205 27 98 chrX 9222860 9222972 -153376958 - L1MC4 LINE L1 -1339 6703 6600 372 212 0 30 chrX 9223004 9223136 -153376794 - L1MB8 LINE L1 -7 6171 6044 627 228 168 0 chrX 9223475 9223672 -153376258 - L1MB7 LINE L1 -10 6174 5945 1734 195 15 12 chrX 9225808 9226147 -153373783 - MER58B DNA MER1_type -1 340 1 1692 98 40 0 chrX 9226552 9226827 -153373103 + L1MA8 LINE L1 6005 6290 -1 309 310 35 21 chrX 9227257 9227483 -153372447 + MLT1H LTR MaLR 57 286 -123 289 231 66 91 chrX 9227536 9227657 -153372273 + MLT1H LTR MaLR 432 549 0 501 62 0 0 chrX 9228720 9228785 -153371145 + (TA)n Simple_repeat Simple_repeat 1 65 0 1057 251 55 45 chrX 9228954 9229352 -153370578 + L1MD2 LINE L1 5956 6357 -2 820 268 70 25 chrX 9229406 9229649 -153370281 + MIR SINE MIR 9 262 0 26 74 0 0 chrX 9230214 9230268 -153369662 + AT_rich Low_complexity Low_complexity 1 54 0 471 232 93 7 chrX 9230857 9231008 -153368922 + LTR33 LTR ERVL 358 521 0 180 132 26 0 chrX 9231772 9231810 -153368120 + MER5C DNA MER1_type 160 198 -126 844 201 45 0 chrX 9232946 9233125 -153366805 - MER20 DNA MER1_type 0 219 33 247 323 40 26 chrX 9233411 9233538 -153366392 - MER5B DNA MER1_type 0 178 60 800 306 90 24 chrX 9233633 9234217 -153365713 - L2 LINE L2 0 3313 2685 184 246 53 0 chrX 9234232 9234289 -153365641 - L2 LINE L2 -898 2416 2357 374 299 15 51 chrX 9235295 9235432 -153364498 - L2 LINE L2 0 3272 3141 185 336 124 18 chrX 9235830 9235943 -153363987 + MIR3 SINE MIR 8 132 -76 270 267 13 0 chrX 9236399 9236474 -153363456 - L2 LINE L2 -878 2436 2361 271 220 0 0 chrX 9236691 9236741 -153363189 + L2 LINE L2 3222 3271 -1 22 35 0 0 chrX 9237395 9237424 -153362506 + AT_rich Low_complexity Low_complexity 1 29 0 200 373 19 32 chrX 9237795 9237953 -153361977 - MIR3 SINE MIR -3 205 50 204 237 0 0 chrX 9238375 9238413 -153361517 + polypyrimidine Low_complexity Low_complexity 4 41 0 401 234 81 18 chrX 9238474 9238585 -153361345 + L2 LINE L2 3183 3300 -13 504 48 0 0 chrX 9239465 9239528 -153360402 + (GGA)n Simple_repeat Simple_repeat 3 65 0 198 103 0 0 chrX 9240364 9240393 -153359537 + (GGAGA)n Simple_repeat Simple_repeat 3 31 0 1632 223 50 56 chrX 9240564 9241138 -153358792 + L1ME3 LINE L1 5563 6133 -29 203 0 0 36 chrX 9241166 9241194 -153358736 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chrX 9242389 9242411 -153357519 + AT_rich Low_complexity Low_complexity 1 22 0 817 209 59 0 chrX 9242411 9242598 -153357332 - L1PB4 LINE L1 -2 6154 5957 205 191 48 0 chrX 9242598 9242640 -153357290 - L2 LINE L2 -15 3298 3255 24 0 0 0 chrX 9242823 9242847 -153357083 + AT_rich Low_complexity Low_complexity 1 24 0 1527 219 41 92 chrX 9243374 9243564 -153356366 - L1ME3A LINE L1 -35 6135 5937 997 175 31 49 chrX 9243564 9243787 -153356143 - MER20 DNA MER1_type 0 219 1 1527 219 41 92 chrX 9243787 9244212 -153355718 - L1ME3A LINE L1 -233 5937 5552 259 318 231 15 chrX 9245384 9245579 -153354351 - MIR SINE MIR -2 260 24 1064 218 9 0 chrX 9245671 9245887 -153354043 + MER20 DNA MER1_type 1 218 -1 1262 159 0 44 chrX 9246668 9246894 -153353036 + MER20 DNA MER1_type 3 218 -1 216 293 13 13 chrX 9247019 9247094 -153352836 + L3b LINE CR1 1260 1334 -249 363 258 61 42 chrX 9247114 9247299 -153352631 + MER5A DNA MER1_type 1 178 0 268 366 30 0 chrX 9247314 9247415 -153352515 - MIR SINE MIR -129 133 30 447 293 96 11 chrX 9247984 9248172 -153351758 + L3 LINE CR1 1181 1384 -193 2553 167 41 20 chrX 9248177 9248717 -153351213 + L1MB7 LINE L1 5619 6169 -15 270 193 0 0 chrX 9248719 9248776 -153351154 + GA-rich Low_complexity Low_complexity 2 58 0 202 368 86 8 chrX 9248776 9248893 -153351037 + L3 LINE CR1 1370 1495 -82 974 231 29 91 chrX 9249109 9249593 -153350337 - LTR16A1 LTR ERVL 0 457 4 238 210 32 0 chrX 9250135 9250197 -153349733 + MIR SINE MIR 199 262 0 1173 159 66 19 chrX 9250907 9251165 -153348765 + MER58B DNA MER1_type 72 341 0 212 207 17 52 chrX 9253582 9253640 -153346290 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2255 225 105 40 chrX 9254623 9255312 -153344618 - L1ME3A LINE L1 0 6170 5418 2429 90 0 6 chrX 9255312 9255623 -153344307 + AluY SINE Alu 3 311 0 2255 225 105 40 chrX 9255623 9255751 -153344179 - L1ME3A LINE L1 -752 5418 5300 918 208 45 32 chrX 9255755 9255976 -153343954 - MER58A DNA MER1_type 0 224 1 257 256 0 56 chrX 9256198 9256288 -153343642 + MLT1J LTR MaLR 224 308 -203 343 268 73 8 chrX 9257032 9257155 -153342775 + MER94 DNA DNA 4 134 0 1044 154 72 19 chrX 9257308 9257516 -153342414 + MER20 DNA MER1_type 1 219 0 1228 188 28 0 chrX 9259080 9259298 -153340632 + MER58A DNA MER1_type 1 224 0 219 272 194 0 chrX 9259786 9259889 -153340041 + L2 LINE L2 777 899 -2415 370 218 92 0 chrX 9260307 9260394 -153339536 - MER5B DNA MER1_type -83 95 1 213 356 85 0 chrX 9260410 9260528 -153339402 + L2 LINE L2 2231 2358 -956 360 0 0 0 chrX 9261867 9261907 -153338023 + (TG)n Simple_repeat Simple_repeat 2 41 0 836 207 20 15 chrX 9262367 9262570 -153337360 - MER20 DNA MER1_type 0 219 16 200 213 0 43 chrX 9263488 9263535 -153336395 + L2 LINE L2 3267 3311 -2 200 300 0 0 chrX 9263739 9263789 -153336141 - L2 LINE L2 0 3313 3264 2332 93 0 7 chrX 9263809 9264111 -153335819 - AluSx SINE Alu -12 300 1 659 50 29 43 chrX 9264858 9264998 -153334932 + (TA)n Simple_repeat Simple_repeat 1 138 0 2203 75 0 55 chrX 9265615 9265923 -153334007 - AluY SINE Alu -20 291 1 180 306 102 20 chrX 9267422 9267520 -153332410 + MIR SINE MIR 41 146 -62 632 257 57 35 chrX 9267598 9268003 -153331927 + L1M4 LINE L1 4206 4619 -1527 1866 242 38 14 chrX 9268772 9269276 -153330654 - LTR40a LTR ERVL -3 516 1 883 283 113 3 chrX 9269310 9269663 -153330267 + LTR16C LTR ERVL 100 491 0 336 266 65 29 chrX 9270195 9270334 -153329596 + MIR SINE MIR 71 214 -48 1039 239 10 96 chrX 9270349 9270743 -153329187 - L2 LINE L2 -1 3312 2953 587 270 52 56 chrX 9270845 9271097 -153328833 - MIR SINE MIR -10 252 2 452 225 92 23 chrX 9271149 9271322 -153328608 + L1ME1 LINE L1 5978 6162 -4 1463 223 46 78 chrX 9271623 9272233 -153327697 + MLT1E LTR MaLR 3 587 -3 197 214 0 0 chrX 9272252 9272294 -153327636 - L2 LINE L2 0 3272 3231 716 239 29 0 chrX 9272400 9272538 -153327392 + MIR SINE MIR 25 166 -96 245 310 123 7 chrX 9272554 9272709 -153327221 - MLT1I LTR MaLR -2 407 235 401 360 89 0 chrX 9272852 9273055 -153326875 - L2 LINE L2 -289 3024 2804 302 306 37 15 chrX 9273095 9273229 -153326701 + L2 LINE L2 3136 3272 0 2015 154 0 7 chrX 9274998 9275304 -153324626 - AluJo SINE Alu -8 304 1 341 296 113 54 chrX 9275564 9275767 -153324163 + MLT1J LTR MaLR 287 501 -10 26 0 0 0 chrX 9275917 9275943 -153323987 + AT_rich Low_complexity Low_complexity 1 26 0 324 240 195 32 chrX 9276838 9276992 -153322938 - MIR SINE MIR 0 262 84 891 155 14 25 chrX 9277031 9277379 -153322551 - MER3 DNA MER1_type 0 2584 2234 481 207 16 16 chrX 9277391 9277512 -153322418 - MER3 DNA MER1_type -41 168 48 402 74 0 0 chrX 9277588 9277642 -153322288 + (TCC)n Simple_repeat Simple_repeat 2 55 0 211 374 24 32 chrX 9277642 9277765 -153322165 + L2 LINE L2 2966 3087 -185 1693 197 3 0 chrX 9278168 9278463 -153321467 - AluJo SINE Alu -12 300 5 401 145 0 3 chrX 9278820 9279053 -153320877 + AluJo SINE Alu 1 304 -8 1161 249 24 51 chrX 9279147 9279366 -153320564 + L1ME3A LINE L1 5728 5931 -239 1943 156 0 0 chrX 9279366 9279703 -153320227 + AluSx SINE Alu 6 342 0 1161 249 24 51 chrX 9279703 9279935 -153319995 + L1ME3A LINE L1 5931 6168 -2 235 276 103 0 chrX 9279943 9280030 -153319900 + L1ME3 LINE L1 949 1044 -5075 1374 200 61 47 chrX 9280470 9280830 -153319100 + MLT1A1 LTR MaLR 1 365 0 782 225 6 0 chrX 9282417 9282577 -153317353 + MER45A DNA AcHobo 1 161 -17 578 118 0 55 chrX 9282751 9282861 -153317069 + L1MD3 LINE L1 7880 7983 -12 314 272 35 9 chrX 9283225 9283339 -153316591 + L1ME3 LINE L1 4441 4557 -1572 320 244 12 0 chrX 9283420 9283502 -153316428 + L1MCc LINE L1 822 904 -5519 829 276 96 68 chrX 9283595 9283767 -153316163 - L2 LINE L2 0 3313 3147 1103 161 28 5 chrX 9283767 9283978 -153315952 - MER20 DNA MER1_type -3 216 1 829 276 96 68 chrX 9283978 9284243 -153315687 - L2 LINE L2 -166 3147 2864 1747 200 30 30 chrX 9284978 9285439 -153314491 + MLT1C LTR MaLR 7 467 0 2211 200 20 20 chrX 9286320 9286776 -153313154 + MSTB2 LTR MaLR 2 457 0 421 266 53 89 chrX 9286778 9287172 -153312758 - L1ME4a LINE L1 -277 5844 5465 426 20 0 0 chrX 9287224 9287275 -153312655 + (CA)n Simple_repeat Simple_repeat 2 52 0 467 205 161 53 chrX 9287304 9287645 -153312285 + L1ME3 LINE L1 5006 5383 -746 2158 239 67 40 chrX 9287703 9288789 -153311141 + L1ME2 LINE L1 4147 5295 -851 2934 222 42 25 chrX 9288852 9289686 -153310244 + L1ME2 LINE L1 5325 6332 -2 2519 199 105 5 chrX 9289686 9290334 -153309596 + L1ME3 LINE L1 5422 6134 -11 946 172 41 0 chrX 9291202 9291371 -153308559 + MER45A DNA AcHobo 1 176 -2 2496 135 36 42 chrX 9291791 9292295 -153307635 + L1MB8 LINE L1 5672 6172 -6 747 171 50 17 chrX 9293267 9293448 -153306482 - MER53 DNA DNA -2 187 1 685 233 56 42 chrX 9293704 9293919 -153306011 + MER20 DNA MER1_type 1 218 -1 733 291 124 45 chrX 9294805 9295320 -153304610 + MLT1L LTR MaLR 1 556 -59 283 270 30 60 chrX 9295622 9295722 -153304208 + MIR SINE MIR 118 214 -48 1016 176 5 4 chrX 9395783 9399631 -153200299 - ALR/Alpha Satellite centromeric 0 3854 1 1177 163 4 2 chrX 9399645 9401919 -153198011 + ALR/Alpha Satellite centromeric 1 2268 -18819 8441 58 7 0 chrX 9401919 9403774 -153196156 + L1PA3 LINE L1 4292 6152 -3 1177 163 4 2 chrX 9403774 9405379 -153194551 + ALR/Alpha Satellite centromeric 2268 3868 -17219 7013 47 5 2 chrX 9405379 9407002 -153192928 - L1PA3 LINE L1 -3 6152 4523 1177 163 4 2 chrX 9407002 9420669 -153179261 + ALR/Alpha Satellite centromeric 3868 21074 -13 1098 152 3 3 chrX 9420682 9422845 -153177085 + ALR/Alpha Satellite centromeric 1 2164 -59 2510 131 129 164 chrX 9422847 9423730 -153176200 - pTR5 LTR ERV1 0 2438 1587 1025 191 1 0 chrX 9423746 9426128 -153173802 - ALR/Alpha Satellite centromeric -2 2383 1 1344 133 3 0 chrX 9426142 9427573 -153172357 - ALR/Alpha Satellite centromeric 0 1434 1 1188 156 2 1 chrX 9427585 9448622 -153151308 - ALR/Alpha Satellite centromeric -1 21060 1 7319 46 0 0 chrX 9448622 9450165 -153149765 + L1PA3 LINE L1 4610 6151 -4 25 31 0 0 chrX 9450165 9450197 -153149733 + AT_rich Low_complexity Low_complexity 1 32 0 242 0 61 0 chrX 9450202 9450235 -153149695 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1095 165 4 3 chrX 9450235 9456794 -153143136 + ALR/Alpha Satellite centromeric 1 7889 -111 7430 37 0 0 chrX 9456794 9458113 -153141817 - L1PA3 LINE L1 0 6155 4837 9294 33 0 2 chrX 9458124 9459243 -153140687 + L1PA3 LINE L1 3691 4807 -1339 1144 169 4 4 chrX 9459243 9466657 -153133273 + ALR/Alpha Satellite centromeric 1 7416 -9 1083 171 2 3 chrX 9466668 9472160 -153127770 + ALR/Alpha Satellite centromeric 1 5484 -6 1070 155 5 2 chrX 9472172 9473530 -153126400 + ALR/Alpha Satellite centromeric 1 1361 -6 1034 173 1 2 chrX 9473545 9475075 -153124855 + ALR/Alpha Satellite centromeric 1 1527 -26 1089 170 5 2 chrX 9475086 9487258 -153112672 + ALR/Alpha Satellite centromeric 1 12213 -1 1124 176 8 5 chrX 9487270 9491962 -153107968 + ALR/Alpha Satellite centromeric 1 4705 -16 5166 74 3 0 chrX 9491962 9492655 -153107275 - L1PA4 LINE L1 -1070 5076 4382 6933 58 1 9 chrX 9492655 9493727 -153106203 + L1PA4 LINE L1 5085 6152 -3 976 163 4 2 chrX 9493735 9494283 -153105647 + ALR/Alpha Satellite centromeric 1 549 -1 15868 74 9 1 chrX 9494283 9496427 -153103503 + L1PA4 LINE L1 665 2825 -3321 6247 40 3 0 chrX 9496427 9497179 -153102751 + L1PA3 LINE L1 5397 6152 -3 19383 60 2 8 chrX 9497198 9500511 -153099419 + L1PA4 LINE L1 2840 6155 0 1153 163 5 2 chrX 9500516 9510522 -153089408 + ALR/Alpha Satellite centromeric 1 10038 0 1189 142 6 3 chrX 9510535 9517515 -153082415 + ALR/Alpha Satellite centromeric 1 6999 0 1223 152 7 1 chrX 9517528 9527861 -153072069 + ALR/Alpha Satellite centromeric 1 10396 0 4736 41 7 0 chrX 9527888 9528470 -153071460 + L1PA3 LINE L1 5566 6151 -4 1099 156 3 2 chrX 9528526 9529831 -153070099 + ALR/Alpha Satellite centromeric 1 1306 0 201 74 0 0 chrX 9529849 9529876 -153070054 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7100 50 0 0 chrX 9529876 9530843 -153069087 - L1PA4 LINE L1 -13 6142 5174 20384 49 6 8 chrX 9530843 9533465 -153066465 + L1PA4 LINE L1 2533 5148 -998 1156 163 2 3 chrX 9533467 9540668 -153059262 + ALR/Alpha Satellite centromeric 1 7198 -14 1072 169 0 4 chrX 9540683 9541188 -153058742 + ALR/Alpha Satellite centromeric 1 502 -12 1209 158 9 1 chrX 9541200 9545073 -153054857 + ALR/Alpha Satellite centromeric 1 3901 -64 21058 57 3 9 chrX 9545073 9547864 -153052066 - L1PA4 LINE L1 -1119 5027 2253 6370 86 8 0 chrX 9547864 9548982 -153050948 + L1PA4 LINE L1 5028 6151 -4 1055 167 17 4 chrX 9549015 9551886 -153048044 + ALR/Alpha Satellite centromeric 1 2906 -15 1021 178 7 4 chrX 9551899 9555114 -153044816 + ALR/Alpha Satellite centromeric 1 3224 -14 1180 157 8 3 chrX 9555128 9565026 -153034904 + ALR/Alpha Satellite centromeric 1 10053 -7923 201 39 0 0 chrX 9565026 9565052 -153034878 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1180 157 8 3 chrX 9565052 9573006 -153026924 + ALR/Alpha Satellite centromeric 10053 17966 -10 1114 165 8 4 chrX 9573017 9579593 -153020337 + ALR/Alpha Satellite centromeric 1 6601 -34 369 0 0 0 chrX 9579595 9579636 -153020294 + (TG)n Simple_repeat Simple_repeat 2 42 0 1192 153 7 2 chrX 9579646 9589199 -153010731 + ALR/Alpha Satellite centromeric 1 9602 0 22 0 0 0 chrX 9689230 9689252 -152910678 + AT_rich Low_complexity Low_complexity 1 22 0 634 277 34 43 chrX 9689349 9689674 -152910256 + L1ME4a LINE L1 5561 5882 -239 2029 235 117 16 chrX 9689707 9690218 -152909712 - MLT1E LTR MaLR 0 593 31 423 207 40 52 chrX 9690219 9690393 -152909537 + L1ME4a LINE L1 5947 6118 -3 30 45 0 0 chrX 9690400 9690444 -152909486 + AT_rich Low_complexity Low_complexity 1 44 0 543 219 9 0 chrX 9691086 9691191 -152908739 - MER94 DNA DNA -28 106 1 443 33 0 0 chrX 9693698 9693758 -152906172 + L1MA1 LINE L1 6242 6301 -1 2896 67 0 0 chrX 9694174 9694546 -152905384 - L1PA6 LINE L1 -6 6148 5777 222 237 0 0 chrX 9694685 9694761 -152905169 + GA-rich Low_complexity Low_complexity 1 76 0 2517 158 20 18 chrX 9697368 9697824 -152902106 + L1MB7 LINE L1 5620 6076 -108 305 100 0 0 chrX 9697824 9697862 -152902068 + L1MB8 LINE L1 6123 6172 -6 869 247 34 71 chrX 9698627 9699033 -152900897 + MLT1H LTR MaLR 84 586 -4 249 222 0 141 chrX 9699294 9699393 -152900537 - LTR67 LTR ERVL -242 315 231 3314 216 26 25 chrX 9699438 9700258 -152899672 + L1ME1 LINE L1 5297 6114 -52 1236 132 68 117 chrX 9700964 9701290 -152898640 - THE1C LTR MaLR -65 310 1 1114 197 95 19 chrX 9702740 9703004 -152896926 + L1MD3 LINE L1 7551 7834 -161 1388 154 36 0 chrX 9703005 9703252 -152896678 + L1MA6 LINE L1 6036 6291 -9 186 279 342 0 chrX 9703586 9703697 -152896233 - MIR SINE MIR -68 194 46 532 218 9 9 chrX 9703991 9704101 -152895829 + MLT1H1 LTR MaLR 2 111 -444 761 241 152 22 chrX 9704122 9704381 -152895549 + MLT1H1 LTR MaLR 253 555 0 383 282 123 26 chrX 9704404 9704599 -152895331 + LTR16C LTR ERVL 276 489 -2 1886 160 16 16 chrX 9704938 9705250 -152894680 - AluJo SINE Alu 0 312 1 6344 87 28 2 chrX 9706091 9707345 -152892585 - L1PA13 LINE L1 -5 6158 4891 251 152 0 0 chrX 9707347 9707393 -152892537 + L1PA13 LINE L1 4862 4907 -1239 232 309 157 51 chrX 9707611 9707847 -152892083 + L3 LINE CR1 1308 1568 -9 196 170 21 43 chrX 9708419 9708466 -152891464 + L2 LINE L2 3263 3308 -5 763 231 121 5 chrX 9708550 9708749 -152891181 - MIR SINE MIR -12 250 29 262 327 49 43 chrX 9708710 9708872 -152891058 + MIR SINE MIR 21 183 -79 * 4187 155 37 9 chrX 9709833 9710590 -152889340 - L1MB7 LINE L1 -6 6178 5401 1940 136 101 119 chrX 9711318 9711832 -152888098 - MLT1D LTR MaLR 0 505 1 186 321 115 36 chrX 9711848 9712013 -152887917 + L2 LINE L2 3129 3306 -7 277 362 48 43 chrX 9712405 9712797 -152887133 - L2 LINE L2 -834 2480 2087 278 359 84 7 chrX 9713033 9713175 -152886755 + MIR3 SINE MIR 35 187 -21 1096 206 5 5 chrX 9713757 9713976 -152885954 - MER20 DNA MER1_type 0 219 1 797 194 87 24 chrX 9714323 9714450 -152885480 - MER20 DNA MER1_type 0 219 73 1656 168 157 42 chrX 9714450 9714903 -152885027 + MLT1D LTR MaLR 1 505 0 797 194 87 24 chrX 9714903 9714981 -152884949 - MER20 DNA MER1_type -146 73 1 1730 121 121 14 chrX 9715234 9715516 -152884414 + AluSx SINE Alu 1 312 0 198 402 25 33 chrX 9715700 9715944 -152883986 + L2 LINE L2 2923 3164 -108 1119 205 19 0 chrX 9716772 9716987 -152882943 + MER20 DNA MER1_type 1 219 0 204 40 0 0 chrX 9717363 9717388 -152882542 + (CA)n Simple_repeat Simple_repeat 2 26 0 2233 110 3 0 chrX 9724888 9725196 -152874734 - AluSq SINE Alu -4 309 1 376 221 17 15 chrX 9726005 9726112 -152873818 - L1ME2 LINE L1 -31 6139 6028 2154 189 19 43 chrX 9726265 9726735 -152873195 + MLT1C LTR MaLR 1 459 -8 270 0 0 0 chrX 9728295 9728325 -152871605 + (GA)n Simple_repeat Simple_repeat 1 30 0 184 297 16 16 chrX 9728336 9728400 -152871530 + MIR SINE MIR 88 151 -111 666 243 68 19 chrX 9728563 9728769 -152871161 - MIR SINE MIR 0 262 47 259 243 103 56 chrX 9728954 9729061 -152870869 - MIR SINE MIR -20 242 131 180 225 25 0 chrX 9729278 9729318 -152870612 - L3b LINE CR1 -338 1245 1205 2674 144 74 2 chrX 9729815 9729844 -152870086 + LOR1b LTR ERV1 1 26 -435 2724 26 3 0 chrX 9729844 9730150 -152869780 - AluY SINE Alu -4 307 1 2674 144 74 2 chrX 9730150 9730550 -152869380 + LOR1b LTR ERV1 26 461 0 217 320 100 0 chrX 9730911 9731011 -152868919 + L2 LINE L2 3204 3313 0 308 132 0 0 chrX 9731133 9731186 -152868744 - L1MB8 LINE L1 -1 6177 6125 671 258 112 27 chrX 9732302 9732562 -152867368 - L2 LINE L2 -11 3302 3021 1968 132 0 4 chrX 9732736 9733017 -152866913 - AluSx SINE Alu -13 299 20 1958 141 3 0 chrX 9734815 9735240 -152864690 - AluSx SINE Alu 0 426 1 651 248 171 0 chrX 9735318 9735528 -152864402 + MIR SINE MIR 12 257 -5 2090 127 16 7 chrX 9735643 9735951 -152863979 - AluJb SINE Alu -1 311 1 1993 142 23 54 chrX 9736956 9737084 -152862846 + MER2 DNA MER2_type 3 133 -211 1900 136 0 0 chrX 9737084 9737376 -152862554 - AluSx SINE Alu 0 310 19 1993 142 23 54 chrX 9737376 9737599 -152862331 + MER2 DNA MER2_type 133 344 0 340 256 0 22 chrX 9737641 9737731 -152862199 - L1MC4 LINE L1 -1341 6701 6614 1526 122 36 0 chrX 9738501 9738722 -152861208 + L1PA15 LINE L1 5935 6163 -2 302 216 117 9 chrX 9738722 9738833 -152861097 + L1MEc LINE L1 2194 2316 -4080 243 291 71 47 chrX 9739550 9739677 -152860253 - MIR3 SINE MIR -6 202 73 200 305 16 47 chrX 9740566 9740694 -152859236 + L2 LINE L2 2545 2668 -646 612 186 98 0 chrX 9740902 9741004 -152858926 - FLAM_A SINE Alu -22 120 9 181 358 173 26 chrX 9741071 9741297 -152858633 + L2 LINE L2 3009 3267 -5 254 276 29 29 chrX 9741460 9741565 -152858365 + L1 LINE L1 4908 5012 -1134 294 305 53 22 chrX 9742235 9742370 -152857560 + MIR SINE MIR 13 153 -74 22 56 0 0 chrX 9743053 9743089 -152856841 + AT_rich Low_complexity Low_complexity 1 36 0 324 0 0 0 chrX 9743638 9743674 -152856256 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chrX 9744159 9744181 -152855749 + AT_rich Low_complexity Low_complexity 1 22 0 6037 138 31 14 chrX 9744237 9745540 -152854390 + L1MA7 LINE L1 4964 6291 0 594 138 60 69 chrX 9745557 9745673 -152854257 - FLAM_A SINE Alu -18 124 10 2143 139 124 23 chrX 9746405 9746792 -152853138 - MSTA LTR MaLR 0 428 3 688 287 54 43 chrX 9746924 9747261 -152852669 - L1M4 LINE L1 -2801 3345 3013 2841 101 3 14 chrX 9747261 9747629 -152852301 + THE1B LTR MaLR 1 364 0 688 287 54 43 chrX 9747629 9747666 -152852264 - L1M4 LINE L1 -3133 3013 2978 873 153 0 23 chrX 9747666 9747797 -152852133 - FLAM_A SINE Alu -5 128 1 688 287 54 43 chrX 9747797 9748110 -152851820 - L1M4 LINE L1 -3168 2978 2650 504 250 11 28 chrX 9748133 9748313 -152851617 - L1M4 LINE L1 -3748 2398 2222 514 211 199 39 chrX 9749272 9749428 -152850502 - MER5A DNA MER1_type 0 189 9 360 220 60 40 chrX 9749458 9749558 -152850372 + L2 LINE L2 3212 3313 0 2069 86 52 0 chrX 9750041 9750342 -152849588 + AluSx SINE Alu 1 315 0 23 33 0 0 chrX 9750610 9750640 -152849290 + AT_rich Low_complexity Low_complexity 1 30 0 231 337 89 15 chrX 9752584 9752786 -152847144 + MLT1L LTR MaLR 197 413 -202 601 191 0 0 chrX 9752967 9753074 -152846856 + MER5A DNA MER1_type 1 107 -82 271 328 122 28 chrX 9753306 9753490 -152846440 - MIR3 SINE MIR -56 206 9 2263 112 3 6 chrX 9754522 9754834 -152845096 + AluSx SINE Alu 1 311 -1 395 261 71 76 chrX 9754845 9754920 -152845010 + L2 LINE L2 3077 3151 -162 1733 124 0 127 chrX 9754920 9755266 -152844664 - AluJo SINE Alu 0 302 1 395 261 71 76 chrX 9755266 9755428 -152844502 + L2 LINE L2 3151 3313 0 2209 113 0 0 chrX 9756283 9756575 -152843355 - AluSx SINE Alu -20 292 1 2138 106 3 13 chrX 9758641 9758944 -152840986 - AluSp SINE Alu -13 300 1 2733 125 2 20 chrX 9760549 9760958 -152838972 - MER50 LTR ERV1 -9 725 324 491 248 72 8 chrX 9761006 9761131 -152838799 + MIR3 SINE MIR 57 189 -19 552 236 9 96 chrX 9761895 9762115 -152837815 + L1MC4a LINE L1 5755 5955 -1853 44178 28 21 1 chrX 9762204 9768235 -152831695 + L1HS LINE L1 1 6155 0 730 153 24 0 chrX 9768354 9768478 -152831452 - L1MB8 LINE L1 -63 6115 5989 1035 221 156 18 chrX 9769620 9770195 -152829735 - LTR50 LTR ERVL -4 791 1 2180 110 0 13 chrX 9770405 9770705 -152829225 + AluSx SINE Alu 3 298 -14 684 177 0 15 chrX 9770776 9770906 -152829024 - MER20 DNA MER1_type -91 128 1 306 0 0 0 chrX 9771218 9771252 -152828678 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 288 240 113 95 chrX 9771817 9772019 -152827911 - L1ME4a LINE L1 -21 6100 5890 2121 133 7 0 chrX 9772019 9772312 -152827618 - AluSx SINE Alu -17 295 1 288 240 113 95 chrX 9772312 9772392 -152827538 - L1ME4a LINE L1 -231 5890 5813 2288 121 0 0 chrX 9772604 9772911 -152827019 + AluSx SINE Alu 1 307 -5 183 207 86 35 chrX 9772952 9773010 -152826920 + MIR SINE MIR 201 261 -1 1054 201 9 31 chrX 9773121 9773345 -152826585 - MER20 DNA MER1_type 0 219 1 277 303 40 0 chrX 9774282 9774381 -152825549 - MLT1J2 LTR MaLR -293 157 55 2419 174 54 11 chrX 9774519 9774967 -152824963 + MLT1C LTR MaLR 1 467 0 1872 148 24 14 chrX 9775866 9776163 -152823767 + AluSx SINE Alu 1 300 -12 653 244 0 29 chrX 9776237 9776409 -152823521 - MIR SINE MIR -2 260 94 2340 50 0 7 chrX 9776673 9776951 -152822979 + AluY SINE Alu 34 309 -2 247 246 8 59 chrX 9777005 9777050 -152822880 - MLT2F LTR ERVL 0 663 617 2044 161 24 24 chrX 9777050 9777422 -152822508 + MLT1A2 LTR MaLR 1 372 -2 247 246 8 59 chrX 9777422 9777494 -152822436 - MLT2F LTR ERVL -46 617 552 741 306 70 25 chrX 9777540 9777867 -152822063 - MLT2F LTR ERVL -319 344 3 196 192 61 61 chrX 9777877 9777976 -152821954 - L2 LINE L2 -830 2484 2386 180 77 0 0 chrX 9778505 9778531 -152821399 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 725 126 0 18 chrX 9778531 9778642 -152821288 - AluJb SINE Alu -191 121 13 262 339 97 42 chrX 9779177 9779342 -152820588 + MER5A DNA MER1_type 16 189 0 1586 209 47 3 chrX 9779791 9780111 -152819819 - MER58B DNA MER1_type -7 334 1 219 349 95 8 chrX 9780721 9780847 -152819083 + MIR SINE MIR 3 139 -123 27 0 0 0 chrX 9781779 9781806 -152818124 + AT_rich Low_complexity Low_complexity 1 27 0 6697 104 2 3 chrX 9781806 9783401 -152816529 - L1PA16 LINE L1 -12 6154 4558 2138 192 132 9 chrX 9783714 9784162 -152815768 - MLT1D LTR MaLR 0 505 3 197 336 69 9 chrX 9784256 9784372 -152815558 + L2 LINE L2 3170 3292 -21 5914 125 30 25 chrX 9785472 9786135 -152813795 + L1MA8 LINE L1 5112 5787 -504 1939 134 44 0 chrX 9786135 9786433 -152813497 + AluSx SINE Alu 1 311 -1 5914 125 30 25 chrX 9786433 9786938 -152812992 + L1MA8 LINE L1 5787 6288 -3 1050 173 77 29 chrX 9788264 9788472 -152811458 - MER20 DNA MER1_type -1 218 1 271 280 178 8 chrX 9789334 9789490 -152810440 - MIR SINE MIR -63 145 12 539 291 146 0 chrX 9789563 9789721 -152810209 + MER5A DNA MER1_type 9 189 0 503 226 119 48 chrX 9789921 9790089 -152809841 + MER117 DNA MER1_type 18 197 0 715 199 49 3 chrX 9792493 9792758 -152807172 - MLT1D LTR MaLR 0 505 147 234 240 182 58 chrX 9793353 9793488 -152806442 + L1MC4a LINE L1 5272 5389 -2419 1774 154 6 61 chrX 9793488 9793818 -152806112 - AluSx SINE Alu 0 312 1 234 240 182 58 chrX 9793818 9793940 -152805990 + L1MC4a LINE L1 5389 5561 -2247 513 190 138 109 chrX 9793947 9794048 -152805882 - MER5A DNA MER1_type 0 189 79 1660 193 21 0 chrX 9794048 9794333 -152805597 - AluJb SINE Alu -21 291 1 513 190 138 109 chrX 9794333 9794405 -152805525 - MER5A DNA MER1_type -110 79 11 254 388 6 0 chrX 9794421 9794599 -152805331 + L1MC4a LINE L1 5574 5752 -2056 268 321 43 27 chrX 9795216 9795403 -152804527 + ERVL LTR ERVL 5238 5427 -337 352 282 29 52 chrX 9796190 9796364 -152803566 + L1MC4a LINE L1 5755 5924 -1884 2519 68 0 0 chrX 9797884 9798192 -152801738 - AluY SINE Alu -1 310 3 1955 165 39 59 chrX 9799247 9799567 -152800363 - LOR1b LTR ERV1 0 461 149 207 0 0 0 chrX 9799567 9799590 -152800340 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1955 165 39 59 chrX 9799590 9799676 -152800254 - LOR1b LTR ERV1 -312 149 63 2076 129 7 7 chrX 9799677 9799971 -152799959 - AluSx SINE Alu -15 297 4 288 130 0 0 chrX 9800010 9800056 -152799874 + (TG)n Simple_repeat Simple_repeat 1 46 0 242 270 54 14 chrX 9800119 9800193 -152799737 + MIR SINE MIR 156 232 -30 239 155 241 0 chrX 9800427 9800485 -152799445 + LOR1a LTR ERV1 1 72 -425 2964 254 88 25 chrX 9800492 9800797 -152799133 - L1M4 LINE L1 -1012 5134 4850 2030 158 56 12 chrX 9800797 9801120 -152798810 - MER1B DNA MER1_type 0 337 1 2964 254 88 25 chrX 9801120 9801870 -152798060 - L1M4 LINE L1 -1296 4850 4012 279 0 0 0 chrX 9802188 9802219 -152797711 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1867 128 0 32 chrX 9802223 9802368 -152797562 - AluSx SINE Alu -40 272 139 198 0 0 0 chrX 9802368 9802390 -152797540 + (TA)n Simple_repeat Simple_repeat 2 23 0 1867 128 0 32 chrX 9802390 9802525 -152797405 - AluSx SINE Alu -173 139 1 419 254 45 45 chrX 9803040 9803174 -152796756 - L2 LINE L2 0 3272 3139 1646 173 0 20 chrX 9803376 9803676 -152796254 - AluJo SINE Alu -17 295 2 372 240 66 16 chrX 9803833 9803954 -152795976 - L2 LINE L2 -52 3261 3135 396 301 89 79 chrX 9804042 9804534 -152795396 - L2 LINE L2 -365 2949 2453 284 304 72 39 chrX 9804564 9804745 -152795185 - L2 LINE L2 -814 2500 2314 260 156 44 0 chrX 9805542 9805587 -152794343 - MLT1K LTR MaLR -2 586 540 1133 146 6 22 chrX 9806258 9806436 -152793494 + FAM SINE Alu 1 175 0 466 230 129 22 chrX 9807400 9807578 -152792352 + MIR SINE MIR 66 262 0 258 211 0 0 chrX 9808084 9808141 -152791789 - L1ME LINE L1 -266 5855 5799 452 317 37 0 chrX 9808329 9808493 -152791437 + MIR SINE MIR 89 258 -4 2449 200 34 53 chrX 9808493 9809077 -152790853 + MER90 LTR ERV1 1 573 -2 574 230 74 120 chrX 9809748 9810166 -152789764 - MLT1L LTR MaLR -73 542 144 235 185 15 62 chrX 9810167 9810232 -152789698 - MER5B DNA MER1_type -5 173 112 193 302 0 0 chrX 9810250 9810303 -152789627 + MER5B DNA MER1_type 126 178 0 340 164 75 0 chrX 9810530 9810597 -152789333 + MER90 LTR ERV1 183 254 -360 215 308 126 61 chrX 9810653 9810867 -152789063 + L2 LINE L2 3031 3258 -14 198 0 0 0 chrX 9810868 9810890 -152789040 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 655 279 40 24 chrX 9810927 9811174 -152788756 - MIR SINE MIR -3 259 9 307 319 66 36 chrX 9811643 9811809 -152788121 + L2 LINE L2 2364 2534 -780 187 255 21 0 chrX 9812305 9812352 -152787578 - L2 LINE L2 -2 3311 3264 302 310 153 72 chrX 9812490 9813171 -152786759 + L1M2 LINE L1 504 1239 -5610 189 0 0 0 chrX 9813370 9813391 -152786539 + (CGGGGG)n Simple_repeat Simple_repeat 1 21 0 28 0 0 0 chrX 9815550 9815578 -152784352 + AT_rich Low_complexity Low_complexity 1 28 0 476 325 18 24 chrX 9817395 9817564 -152782366 - MER5B DNA MER1_type -10 168 1 22 0 0 0 chrX 9818055 9818077 -152781853 + AT_rich Low_complexity Low_complexity 1 22 0 1144 199 19 5 chrX 9820010 9820226 -152779704 - MER20 DNA MER1_type 0 219 1 217 258 121 45 chrX 9822013 9822145 -152777785 + L2 LINE L2 3162 3303 -10 369 83 50 0 chrX 9822246 9822306 -152777624 - L1MB7 LINE L1 0 6184 6122 1184 176 75 75 chrX 9822317 9822596 -152777334 + AluJo SINE Alu 3 281 -31 889 181 50 6 chrX 9822637 9822819 -152777111 - L1MB7 LINE L1 -93 6091 5902 423 129 43 0 chrX 9822965 9823035 -152776895 - L1MB5 LINE L1 -8 6166 6094 1729 166 15 15 chrX 9823055 9823380 -152776550 - L1MB7 LINE L1 -63 6121 5797 1438 189 86 17 chrX 9823906 9824208 -152775722 - MER58B DNA MER1_type -17 324 2 1903 131 0 26 chrX 9824555 9824860 -152775070 - AluJb SINE Alu -15 297 1 619 235 142 73 chrX 9824908 9825197 -152774733 - MER58B DNA MER1_type -30 311 3 2113 107 0 4 chrX 9826555 9826835 -152773095 - AluSq SINE Alu -34 279 1 2475 74 3 0 chrX 9829263 9829572 -152770358 - AluY SINE Alu -1 310 1 2509 60 0 3 chrX 9831595 9831894 -152768036 + AluY SINE Alu 1 298 -13 857 231 77 15 chrX 9834518 9834886 -152765044 - L2 LINE L2 -270 3043 2652 1984 141 13 7 chrX 9834886 9835005 -152764925 + AluJo SINE Alu 1 118 -194 207 0 0 0 chrX 9835005 9835028 -152764902 + (CA)n Simple_repeat Simple_repeat 2 24 0 1984 141 13 7 chrX 9835028 9835213 -152764717 + AluJo SINE Alu 118 307 -5 857 231 77 15 chrX 9835213 9835243 -152764687 - L2 LINE L2 -661 2652 2625 289 273 45 53 chrX 9835306 9835438 -152764492 - L2 LINE L2 -1029 2285 2155 518 67 13 0 chrX 9835446 9835521 -152764409 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 920 186 50 25 chrX 9835539 9835738 -152764192 - AluJo SINE Alu -23 289 86 1538 93 14 19 chrX 9835738 9835953 -152763977 - AluSq SINE Alu -99 214 1 200 271 0 0 chrX 9836995 9837043 -152762887 + CT-rich Low_complexity Low_complexity 1 48 0 2401 193 47 26 chrX 9837245 9837738 -152762192 - MLT1D LTR MaLR -2 503 1 678 224 36 24 chrX 9837813 9837978 -152761952 + MER69A DNA AcHobo 1 167 -10 1487 166 28 21 chrX 9838473 9838740 -152761190 + L1MB7 LINE L1 5879 6150 -34 2874 130 34 0 chrX 9838740 9839154 -152760776 + MSTA LTR MaLR 1 428 0 1487 166 28 21 chrX 9839154 9839169 -152760761 + L1MB7 LINE L1 6150 6163 -21 866 205 175 119 chrX 9840200 9840679 -152759251 + MLT1H LTR MaLR 36 541 -8 226 203 14 14 chrX 9841201 9841275 -152758655 + (TA)n Simple_repeat Simple_repeat 2 75 0 287 313 29 47 chrX 9841306 9841514 -152758416 - L1ME LINE L1 -301 5820 5616 21 0 0 0 chrX 9842356 9842377 -152757553 + AT_rich Low_complexity Low_complexity 1 21 0 230 198 231 58 chrX 9842565 9842686 -152757244 + LTR41 LTR ERVL 28 169 -604 399 287 11 0 chrX 9842928 9843022 -152756908 - L1ME LINE L1 -508 5613 5519 223 221 116 116 chrX 9843104 9843199 -152756731 - MER5A DNA MER1_type 0 189 95 27 0 0 0 chrX 9843431 9843458 -152756472 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chrX 9843812 9843835 -152756095 + AT_rich Low_complexity Low_complexity 1 23 0 1128 217 19 5 chrX 9844047 9844259 -152755671 + MER58A DNA MER1_type 7 221 -3 3765 146 38 5 chrX 9844798 9845428 -152754502 - L1MB2 LINE L1 -1 6170 5520 22 0 0 0 chrX 9845453 9845475 -152754455 + AT_rich Low_complexity Low_complexity 1 22 0 468 210 75 14 chrX 9846090 9846507 -152753423 - MLT1H LTR MaLR -8 547 12 1177 174 1 4 chrX 9846640 9846883 -152753047 - MER58A DNA MER1_type -5 219 1 1671 156 87 10 chrX 9846938 9847227 -152752703 + AluJb SINE Alu 1 311 -1 1801 186 159 7 chrX 9848343 9848758 -152751172 + LTR48 LTR ERV1 1 478 -309 1064 200 10 10 chrX 9849414 9849619 -152750311 + LTR48B LTR ERV1 440 644 0 2231 99 16 0 chrX 9850427 9850730 -152749200 - AluSg1 SINE Alu 0 309 2 397 193 101 92 chrX 9851565 9851793 -152748137 - L1MC5 LINE L1 -42 7919 7690 23 54 0 0 chrX 9851978 9852015 -152747915 + AT_rich Low_complexity Low_complexity 1 37 0 1847 157 80 17 chrX 9852015 9852366 -152747564 - THE1C LTR MaLR -2 373 1 2658 157 40 65 chrX 9852378 9852915 -152747015 + L1MB7 LINE L1 5581 6068 -98 2212 103 0 3 chrX 9852915 9853205 -152746725 + AluSq SINE Alu 1 289 -24 2658 157 40 65 chrX 9853205 9853299 -152746631 + L1MB7 LINE L1 6068 6163 -3 2050 142 7 0 chrX 9853461 9853756 -152746174 - AluSx SINE Alu -15 297 1 1164 207 31 105 chrX 9854138 9854596 -152745334 - L1MC5 LINE L1 -370 7591 7168 1740 222 189 2 chrX 9854602 9855053 -152744877 + MLT1F LTR MaLR 5 539 -3 501 174 83 38 chrX 9855054 9855186 -152744744 - L1MC5 LINE L1 -789 7172 7035 307 238 65 89 chrX 9855303 9855517 -152744413 - L1ME LINE L1 -312 5809 5601 224 245 38 0 chrX 9855612 9855665 -152744265 - L2 LINE L2 0 3313 3259 278 250 57 11 chrX 9856389 9856477 -152743453 - L1ME4a LINE L1 -36 6085 5994 2928 116 34 27 chrX 9857148 9857622 -152742308 - L1MA7 LINE L1 0 6291 5815 1258 90 56 0 chrX 9857623 9857801 -152742129 + L1M2 LINE L1 5564 5751 -540 213 263 197 26 chrX 9858304 9858456 -152741474 - MIR SINE MIR -57 205 28 611 230 68 75 chrX 9858480 9858745 -152741185 + ORSL DNA AcHobo 13 275 0 241 379 46 0 chrX 9859129 9859216 -152740714 - MIR SINE MIR -85 123 33 391 293 98 10 chrX 9860098 9860291 -152739639 + MIR SINE MIR 1 217 -45 1157 196 48 0 chrX 9860858 9861067 -152738863 - MER20 DNA MER1_type 0 219 1 2087 133 3 13 chrX 9861324 9861626 -152738304 + AluSx SINE Alu 1 299 -13 203 100 0 50 chrX 9861656 9861696 -152738234 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 25 0 0 0 chrX 9862476 9862501 -152737429 + AT_rich Low_complexity Low_complexity 1 25 0 1825 172 0 3 chrX 9863068 9863370 -152736560 + AluJo SINE Alu 1 301 -11 234 118 0 0 chrX 9864267 9864301 -152735629 - MER3 DNA MER1_type -160 49 16 2870 217 40 17 chrX 9864345 9865328 -152734602 - L1ME4a LINE L1 -167 5997 4997 405 0 0 0 chrX 9865855 9865900 -152734030 + (TC)n Simple_repeat Simple_repeat 2 46 0 2385 121 14 93 chrX 9866071 9866500 -152733430 - MLT2C1 LTR ERVL -2 395 1 786 326 61 22 chrX 9866891 9867253 -152732677 + L2 LINE L2 2300 2675 -639 25 31 0 0 chrX 9868076 9868108 -152731822 + AT_rich Low_complexity Low_complexity 1 32 0 415 331 58 0 chrX 9868649 9868821 -152731109 - MIR SINE MIR -64 198 17 2730 23 0 0 chrX 9869309 9869608 -152730322 - L1PA2 LINE L1 0 6155 5857 2781 188 90 2 chrX 9869670 9870191 -152729739 + MLT1F1 LTR MaLR 1 567 0 2104 138 0 0 chrX 9870710 9871001 -152728929 - AluSx SINE Alu -21 291 1 427 198 198 64 chrX 9871023 9871180 -152728750 + MER5B DNA MER1_type 1 178 0 307 301 88 37 chrX 9871247 9871322 -152728608 + MIR3 SINE MIR 65 135 -73 749 153 68 74 chrX 9871322 9871498 -152728432 - MER5B DNA MER1_type 0 178 4 307 301 88 37 chrX 9871498 9871558 -152728372 + MIR3 SINE MIR 135 207 -1 2795 79 3 8 chrX 9871818 9872184 -152727746 - THE1B LTR MaLR 0 364 1 611 121 20 0 chrX 9872705 9872804 -152727126 - MER89 LTR ERV1 0 559 459 2176 159 22 84 chrX 9873151 9873686 -152726244 + MLT1D LTR MaLR 4 505 0 2320 90 30 0 chrX 9873981 9874281 -152725649 + AluSg SINE Alu 1 309 -1 1173 204 32 53 chrX 9874560 9874905 -152725025 - MSTC LTR MaLR 0 428 1 25 65 0 0 chrX 9874915 9874961 -152724969 + AT_rich Low_complexity Low_complexity 1 46 0 543 291 50 6 chrX 9875244 9875423 -152724507 + MIR SINE MIR 21 207 -55 617 187 159 0 chrX 9875428 9875610 -152724320 + MER5C DNA MER1_type 113 323 -1 339 239 141 0 chrX 9875618 9875710 -152724220 + MER58A DNA MER1_type 1 105 -2 1261 180 90 37 chrX 9875711 9876034 -152723896 - MER2 DNA MER2_type -2 343 4 587 219 0 47 chrX 9876037 9876165 -152723765 + MER58A DNA MER1_type 103 224 0 * 688 294 25 0 chrX 9876165 9876367 -152723563 + LTR16C LTR ERVL 276 482 -9 1700 211 17 42 chrX 9876370 9876772 -152723158 + MSTD LTR MaLR 3 394 -2 33 0 0 0 chrX 9878243 9878276 -152721654 + AT_rich Low_complexity Low_complexity 1 33 0 245 304 230 6 chrX 9878286 9878447 -152721483 - MIR SINE MIR -8 254 58 1718 217 9 0 chrX 9878505 9878841 -152721089 - MER58B DNA MER1_type -2 339 1 721 292 142 0 chrX 9879124 9879350 -152720580 - L2 LINE L2 -890 2424 2135 1115 198 28 0 chrX 9879350 9879562 -152720368 - MER20 DNA MER1_type 0 219 2 721 292 142 0 chrX 9879562 9879667 -152720263 - L2 LINE L2 -1179 2135 2046 432 0 0 0 chrX 9880145 9880193 -152719737 + (TG)n Simple_repeat Simple_repeat 1 48 0 232 184 79 53 chrX 9880427 9880503 -152719427 + MIR SINE MIR 122 199 -63 972 211 29 61 chrX 9880543 9880823 -152719107 + L1MD2 LINE L1 6072 6342 -17 262 126 78 0 chrX 9882017 9882120 -152717810 + (TA)n Simple_repeat Simple_repeat 1 111 0 535 305 54 69 chrX 9882829 9883252 -152716678 - MLT1J LTR MaLR -94 417 1 319 261 36 18 chrX 9883284 9883395 -152716535 + MLT1J LTR MaLR 399 511 0 369 299 27 54 chrX 9883453 9883677 -152716253 - MER102b DNA MER1_type 0 341 124 1236 203 11 89 chrX 9883869 9884219 -152715711 - MLT2B1 LTR ERVL -197 323 1 942 100 0 0 chrX 9884398 9884528 -152715402 + L1PA16 LINE L1 6027 6156 -10 23 54 0 0 chrX 9885561 9885598 -152714332 + AT_rich Low_complexity Low_complexity 1 37 0 236 326 27 62 chrX 9885920 9886144 -152713786 + HAL1 LINE L1 2231 2446 -61 280 339 204 17 chrX 9886199 9886798 -152713132 - L2 LINE L2 -692 2622 1912 346 390 58 25 chrX 9887208 9887482 -152712448 + L3 LINE CR1 1289 1571 -6 302 315 19 19 chrX 9887502 9887610 -152712320 - L3 LINE CR1 -1 1576 1469 5272 125 29 14 chrX 9887629 9888483 -152711447 - L1MC1 LINE L1 -6 6327 5461 711 249 49 53 chrX 9888697 9889042 -152710888 + MLT1I LTR MaLR 67 408 -1 190 331 86 60 chrX 9889443 9889594 -152710336 - L3 LINE CR1 -199 1378 1224 233 247 22 45 chrX 9890718 9890807 -152709123 + CT-rich Low_complexity Low_complexity 3 89 0 290 210 16 0 chrX 9890902 9890964 -152708966 + MER68 LTR ERV1 1 63 -499 811 271 116 34 chrX 9891020 9891374 -152708556 + MER68 LTR ERV1 180 562 0 227 200 0 0 chrX 9891528 9891563 -152708367 - L2 LINE L2 -28 3244 3210 * 420 211 119 9 chrX 9891533 9891642 -152708288 - MIR SINE MIR -27 235 115 252 303 134 25 chrX 9891692 9891811 -152708119 - L2 LINE L2 -5 3267 3136 213 291 18 0 chrX 9892687 9892742 -152707188 - MIR3 SINE MIR -18 190 135 3009 236 52 58 chrX 9893638 9894856 -152705074 - L1ME1 LINE L1 -67 6910 5747 185 0 40 0 chrX 9894856 9894881 -152705049 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 3009 236 52 58 chrX 9894881 9895639 -152704291 - L1ME1 LINE L1 -1230 5747 4986 6151 182 25 23 chrX 9896135 9898278 -152701652 + L1MB2 LINE L1 4019 6164 -7 493 246 87 61 chrX 9898354 9898618 -152701312 - L1ME1 LINE L1 -6584 275 5 22 35 0 0 chrX 9899238 9899267 -152700663 + AT_rich Low_complexity Low_complexity 1 29 0 908 138 0 0 chrX 9899634 9899772 -152700158 + AluJb SINE Alu 175 312 0 406 254 0 9 chrX 9899774 9899884 -152700046 - L1M4 LINE L1 -3353 2793 2685 2958 184 24 11 chrX 9899893 9900514 -152699416 + L1PA13 LINE L1 2323 2951 -3195 13246 163 16 0 chrX 9900617 9901453 -152698477 + L1PA13 LINE L1 2870 3691 -2472 2105 133 50 8 chrX 9901453 9901813 -152698117 - THE1C LTR MaLR 0 375 1 10249 99 30 48 chrX 9901813 9903422 -152696508 - THE1C-int LTR MaLR 0 1580 1 1903 145 83 14 chrX 9903422 9903773 -152696157 - THE1C LTR MaLR 0 375 1 13246 163 16 0 chrX 9903773 9906201 -152693729 + L1PA13 LINE L1 3690 6158 -5 28 29 0 0 chrX 9906239 9906274 -152693656 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chrX 9906648 9906671 -152693259 + AT_rich Low_complexity Low_complexity 1 23 0 248 0 31 0 chrX 9907212 9907244 -152692686 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 27 49 0 0 chrX 9908480 9908521 -152691409 + AT_rich Low_complexity Low_complexity 1 41 0 2686 107 70 7 chrX 9909293 9909696 -152690234 - MSTA LTR MaLR 0 428 1 396 335 138 12 chrX 9909993 9910247 -152689683 + LTR16B LTR ERVL 2 287 -177 204 40 0 0 chrX 9910321 9910346 -152689584 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 198 0 0 0 chrX 9910450 9910472 -152689458 + (T)n Simple_repeat Simple_repeat 1 22 0 3060 27 0 64 chrX 9910488 9910896 -152689034 - L1PA4 LINE L1 -4 6151 5770 452 353 63 9 chrX 9912983 9913204 -152686726 - MIR SINE MIR -15 247 15 951 183 28 5 chrX 9913429 9913642 -152686288 - LTR54 LTR ERV1 0 510 293 865 132 66 60 chrX 9913659 9913841 -152686089 - LTR54 LTR ERV1 -327 183 1 1002 216 39 26 chrX 9914149 9914459 -152685471 - Charlie7 DNA MER1_type -1751 861 548 244 208 195 0 chrX 9914529 9914606 -152685324 - MER112 DNA MER1_type -96 164 73 1372 261 94 24 chrX 9914702 9915211 -152684719 - Charlie7 DNA MER1_type -2062 550 6 245 374 176 4 chrX 9915248 9915486 -152684444 + L2 LINE L2 2818 3096 -217 438 152 38 13 chrX 9915636 9915715 -152684215 + MER58B DNA MER1_type 260 340 -1 310 283 40 20 chrX 9915718 9915817 -152684113 + MIR3 SINE MIR 91 191 -17 995 139 11 0 chrX 9916163 9916343 -152683587 + L1MA7 LINE L1 6108 6289 -2 249 254 17 0 chrX 9916848 9916907 -152683023 - L2 LINE L2 -5 3267 3208 338 321 55 0 chrX 9917530 9917639 -152682291 + MIR3 SINE MIR 87 201 -7 318 361 33 0 chrX 9917826 9917948 -152681982 + LTR16C LTR ERVL 154 279 -212 445 153 13 4 chrX 9917999 9918085 -152681845 + LTR16C LTR ERVL 372 490 -1 590 153 90 45 chrX 9918182 9918359 -152681571 + MER53 DNA DNA 1 185 -4 307 260 52 0 chrX 9918681 9918758 -152681172 + L2 LINE L2 3231 3311 -2 1191 149 0 3 chrX 9919612 9919831 -152680099 + L1M3 LINE L1 5479 5694 -489 2238 186 94 73 chrX 9919898 9920663 -152679267 + L1M4 LINE L1 4053 4833 -1313 951 128 7 0 chrX 9920663 9920811 -152679119 + AluSp/q SINE Alu 157 305 -8 1459 114 0 92 chrX 9920813 9920901 -152679029 - MER2 DNA MER2_type -79 266 172 1805 158 7 3 chrX 9920901 9921193 -152678737 - AluJb SINE Alu -19 293 1 1459 114 0 92 chrX 9921193 9921376 -152678554 - MER2 DNA MER2_type -173 172 20 203 182 0 159 chrX 9921981 9922069 -152677861 + L2 LINE L2 3171 3244 -69 2239 34 4 0 chrX 9922613 9922877 -152677053 - AluY SINE Alu -6 305 41 1266 160 33 0 chrX 9923586 9923798 -152676132 + MER20 DNA MER1_type 1 219 0 30 27 0 0 chrX 9926393 9926430 -152673500 + AT_rich Low_complexity Low_complexity 1 37 0 615 325 48 0 chrX 9926872 9927081 -152672849 + MIR SINE MIR 13 231 -31 2260 129 0 0 chrX 9927382 9927684 -152672246 - AluSx SINE Alu -10 302 1 186 224 0 41 chrX 9927740 9927789 -152672141 - L2 LINE L2 -5 3308 3262 544 154 0 108 chrX 9927807 9927937 -152671993 + L1ME LINE L1 5428 5543 -621 274 301 0 12 chrX 9928066 9928149 -152671781 + CT-rich Low_complexity Low_complexity 1 82 0 445 300 114 71 chrX 9928154 9928504 -152671426 - L1M4 LINE L1 -5636 906 542 261 273 77 16 chrX 9928775 9928958 -152670972 - L1M4 LINE L1 -6333 209 16 3469 235 57 13 chrX 9928972 9930246 -152669684 - L1M4 LINE L1 -2304 3842 2512 1854 159 21 7 chrX 9930528 9930818 -152669112 - AluSx SINE Alu -18 294 1 1080 178 89 0 chrX 9931143 9931345 -152668585 - MER58A DNA MER1_type -4 220 1 284 276 46 79 chrX 9933036 9933188 -152666742 - MIR SINE MIR -96 166 20 313 281 131 44 chrX 9933414 9933574 -152666356 + MER5B DNA MER1_type 5 178 0 204 40 0 0 chrX 9934384 9934409 -152665521 + (T)n Simple_repeat Simple_repeat 1 25 0 236 186 0 27 chrX 9934458 9934541 -152665389 - Charlie8 DNA MER1_type -2 2415 1347 225 270 111 0 chrX 9934591 9934654 -152665276 - Charlie8 DNA MER1_type -2347 70 1 1081 154 72 0 chrX 9935632 9935827 -152664103 - MER3 DNA MER1_type 0 209 1 840 265 51 9 chrX 9935848 9936063 -152663867 + MIR SINE MIR 31 254 -8 423 337 163 22 chrX 9936103 9936664 -152663266 - L2 LINE L2 -186 3086 2460 4952 130 19 5 chrX 9937167 9938004 -152661926 + L1PA16 LINE L1 5317 6165 -1 2338 96 7 0 chrX 9938425 9938727 -152661203 + AluSx SINE Alu 1 304 -8 572 242 25 13 chrX 9939244 9939401 -152660529 - MER20 DNA MER1_type -60 159 1 893 236 116 95 chrX 9939793 9940352 -152659578 + MLT1L LTR MaLR 1 571 -44 215 346 68 45 chrX 9940501 9940634 -152659296 - L2 LINE L2 -16 3256 3121 413 269 192 0 chrX 9940767 9940975 -152658955 - L1ME1 LINE L1 -5 6161 5914 2284 101 0 0 chrX 9940992 9941323 -152658607 - AluY SINE Alu 0 331 1 1517 211 43 133 chrX 9941326 9942271 -152657659 - L1M4c LINE L1 -4728 2231 1356 1698 194 28 14 chrX 9942271 9942631 -152657299 - MLT1A1 LTR MaLR 0 365 1 1517 211 43 133 chrX 9942631 9942691 -152657239 - L1M4c LINE L1 -5603 1356 1292 234 209 60 0 chrX 9942799 9942866 -152657064 + CT-rich Low_complexity Low_complexity 3 73 0 16419 26 0 0 chrX 9943152 9945867 -152654063 + L1PA3 LINE L1 3441 6155 0 26 30 0 0 chrX 9945867 9945900 -152654030 + AT_rich Low_complexity Low_complexity 1 33 0 247 236 16 87 chrX 9945934 9946061 -152653869 - L1M4c LINE L1 -5477 1382 1265 5799 103 4 52 chrX 9946235 9947249 -152652681 - L1P LINE L1 -1518 4628 3664 484 246 35 123 chrX 9947318 9947516 -152652414 - L1M4 LINE L1 -4424 2401 2187 1313 228 54 7 chrX 9947516 9947814 -152652116 - AluJo SINE Alu 0 312 1 484 246 35 123 chrX 9947814 9947938 -152651992 - L1M4 LINE L1 -4638 2187 2130 2004 137 0 44 chrX 9947938 9948259 -152651671 - AluSx SINE Alu -5 307 1 484 246 35 123 chrX 9948259 9948399 -152651531 - L1M4 LINE L1 -4695 2130 1979 335 241 0 0 chrX 9948400 9948483 -152651447 + MLT2B2 LTR ERVL 1 83 -432 235 146 0 0 chrX 9948475 9948516 -152651414 + MLT2B1 LTR ERVL 473 513 -7 * 1177 258 90 16 chrX 9948519 9949178 -152650752 - L1M4 LINE L1 -4815 1831 1112 2253 107 65 0 chrX 9949659 9949997 -152649933 + MER46B DNA MER2_type 2 236 0 525 229 34 0 chrX 9950215 9950333 -152649597 - L2 LINE L2 -4 3309 3188 291 288 111 26 chrX 9950324 9950477 -152649453 - L2 LINE L2 -936 2378 2213 * 195 184 0 0 chrX 9951670 9951708 -152648222 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 212 194 48 0 chrX 9951740 9951802 -152648128 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 31 44 0 0 chrX 9951910 9951955 -152647975 + AT_rich Low_complexity Low_complexity 1 45 0 3027 126 22 38 chrX 9952178 9952726 -152647204 + L1MB2 LINE L1 5629 6167 -4 24 0 0 0 chrX 9954007 9954031 -152645899 + AT_rich Low_complexity Low_complexity 1 24 0 501 259 229 34 chrX 9954062 9954298 -152645632 + L2 LINE L2 2921 3202 -111 2465 122 3 31 chrX 9954503 9954887 -152645043 + MER83C LTR ERV1 1 373 0 1076 140 45 18 chrX 9955852 9956073 -152643857 - Tigger1 DNA MER2_type 0 2418 2192 822 120 6 84 chrX 9956067 9956234 -152643696 - Tigger1 DNA MER2_type -2264 154 1 * 372 210 12 12 chrX 9956480 9956561 -152643369 - Tigger5 DNA MER2_type -1 2322 2242 333 175 0 0 chrX 9956557 9956614 -152643316 + Tigger5 DNA MER2_type 2264 2320 -3 * 731 257 103 94 chrX 9956818 9957362 -152642568 - MLT1H LTR MaLR 0 549 1 269 380 9 9 chrX 9957369 9957477 -152642453 - MIR3 SINE MIR -25 183 76 525 192 30 0 chrX 9957495 9957594 -152642336 + MER5A DNA MER1_type 11 112 -77 638 259 20 73 chrX 9957750 9957997 -152641933 - MIR SINE MIR -14 248 15 657 239 6 28 chrX 9958895 9959071 -152640859 + MIR SINE MIR 89 260 -2 461 194 82 0 chrX 9959086 9959184 -152640746 + L2 LINE L2 3208 3313 0 214 227 45 15 chrX 9959288 9959354 -152640576 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 1315 193 94 12 chrX 9960282 9960613 -152639317 - L1MD3 LINE L1 -3 7992 7635 210 333 13 0 chrX 9960960 9961038 -152638892 - MIR SINE MIR -3 259 181 352 286 20 27 chrX 9961038 9961185 -152638745 + MLT2F LTR ERVL 1 146 -517 776 169 5 65 chrX 9961186 9961370 -152638560 + MLT1E3 LTR MaLR 50 222 -402 765 230 43 95 chrX 9961201 9961570 -152638360 + MLT2C1 LTR ERVL 44 393 -4 * 485 289 82 6 chrX 9961581 9961740 -152638190 - MIR SINE MIR -90 172 2 606 233 80 6 chrX 9961814 9961977 -152637953 + MER5B DNA MER1_type 1 175 -3 411 218 20 30 chrX 9962037 9962138 -152637792 - MER5A DNA MER1_type -75 114 15 972 189 18 28 chrX 9962447 9962664 -152637266 - MER20 DNA MER1_type -4 215 1 2133 182 0 11 chrX 9963627 9963996 -152635934 + MLT1A1 LTR MaLR 1 365 0 536 204 154 49 chrX 9964124 9964286 -152635644 - MER5A DNA MER1_type -2 187 9 727 162 35 53 chrX 9964471 9964643 -152635287 + L1ME2 LINE L1 5840 6008 -158 574 236 48 24 chrX 9964660 9964868 -152635062 + L1MC5 LINE L1 7698 7910 -51 855 278 111 62 chrX 9964973 9965634 -152634296 - L2 LINE L2 0 3313 2632 239 222 0 0 chrX 9965770 9965815 -152634115 + MER5A DNA MER1_type 9 53 -136 754 137 7 0 chrX 9965852 9965991 -152633939 + L1MA7 LINE L1 6150 6289 -2 799 238 22 9 chrX 9966007 9966230 -152633700 - L2 LINE L2 -685 2629 2404 420 227 0 0 chrX 9966441 9966560 -152633370 + A-rich Low_complexity Low_complexity 1 119 0 343 236 102 74 chrX 9966567 9966783 -152633147 + L1M4 LINE L1 3072 3293 -2853 38 0 0 0 chrX 9966787 9966825 -152633105 + AT_rich Low_complexity Low_complexity 1 38 0 7000 37 1 0 chrX 9966825 9968316 -152631614 - L1PA3 LINE L1 -3 6152 4676 588 212 19 9 chrX 9968343 9968560 -152631370 + C-rich Low_complexity Low_complexity 1 219 0 3615 73 2 0 chrX 9969278 9969800 -152630130 - L1P LINE L1 -4670 1476 954 5936 81 17 17 chrX 9970750 9971732 -152628198 - L1PB2 LINE L1 -4 6147 5164 902 196 46 95 chrX 9971867 9972299 -152627631 - MLT1A2 LTR MaLR 0 374 2 588 302 80 9 chrX 9972478 9972703 -152627227 - L2 LINE L2 -656 2658 2418 1690 176 10 10 chrX 9973422 9973723 -152626207 - AluJo SINE Alu -11 301 1 180 311 243 0 chrX 9975413 9975516 -152624414 - MIR SINE MIR -6 256 129 228 234 13 65 chrX 9975771 9975848 -152624082 - MLT1J2 LTR MaLR -6 444 372 2215 158 31 23 chrX 9975947 9976334 -152623596 - MLT1B LTR MaLR 0 390 1 778 264 65 55 chrX 9976370 9976662 -152623268 + MLT1I LTR MaLR 115 409 0 306 271 31 10 chrX 9976825 9976921 -152623009 - MLT1J1 LTR MaLR -266 180 83 2917 94 22 2 chrX 9976921 9977327 -152622603 - MSTA LTR MaLR 0 428 15 22125 169 45 13 chrX 9977328 9983032 -152616898 + L1PA13 LINE L1 132 6137 -677 2541 97 58 17 chrX 9983032 9983392 -152616538 - THE1C LTR MaLR 0 375 1 22125 169 45 13 chrX 9983392 9984093 -152615837 + L1PA13 LINE L1 6137 6814 0 266 303 42 35 chrX 9984507 9984649 -152615281 - L2 LINE L2 -188 3084 2942 2449 91 0 0 chrX 9984650 9984959 -152614971 + AluSx SINE Alu 1 309 -3 920 267 123 35 chrX 9985088 9985511 -152614419 + MLT1C LTR MaLR 1 460 -7 1085 268 104 35 chrX 9986064 9986572 -152613358 - MLT1H1 LTR MaLR -7 548 6 202 222 0 22 chrX 9986641 9986686 -152613244 + L2 LINE L2 3229 3272 0 432 214 298 35 chrX 9987576 9987865 -152612065 + L2 LINE L2 2935 3299 -14 486 314 0 0 chrX 9989514 9989632 -152610298 + L2 LINE L2 3153 3270 -2 44127 35 22 2 chrX 9989913 9996139 -152603791 - L1HS LINE L1 0 6155 1 944 106 0 57 chrX 9997057 9997198 -152602732 - FLAM_A SINE Alu 0 133 1 1070 172 32 93 chrX 9997517 9997796 -152602134 - L1MB5 LINE L1 0 6174 5913 21 36 0 0 chrX 9998188 9998216 -152601714 + AT_rich Low_complexity Low_complexity 1 28 0 1691 171 27 24 chrX 9998216 9998544 -152601386 - MSTD LTR MaLR -51 345 17 505 248 8 8 chrX 9998611 9998732 -152601198 - HAL1 LINE L1 -2119 388 268 804 185 0 101 chrX 9998742 9998931 -152600999 - MER58B DNA MER1_type 0 341 172 375 236 99 43 chrX 9998948 9999109 -152600821 - HAL1 LINE L1 -2333 174 5 698 259 24 0 chrX 9999791 9999961 -152599969 + MER5B DNA MER1_type 1 174 -4 638 212 33 54 chrX 10000177 10000303 -152599627 - MIR SINE MIR -38 224 102 2668 157 49 2 chrX 10000303 10000710 -152599220 - MSTB LTR MaLR 0 426 1 638 212 33 54 chrX 10000710 10000767 -152599163 - MIR SINE MIR -160 102 45 538 271 59 25 chrX 10000889 10001125 -152598805 + MER46C DNA MER2_type 1 244 -94 1096 243 140 34 chrX 10001139 10001380 -152598550 + MLT1I LTR MaLR 14 307 -102 3273 173 12 12 chrX 10001380 10001895 -152598035 + MLT2B2 LTR ERVL 1 515 0 1096 243 140 34 chrX 10001895 10002011 -152597919 + MLT1I LTR MaLR 307 409 0 407 205 26 0 chrX 10002024 10002102 -152597828 + MER46C DNA MER2_type 258 337 -1 229 286 214 10 chrX 10002214 10002312 -152597618 + L2 LINE L2 3150 3267 -5 2413 78 3 13 chrX 10002629 10002935 -152596995 + AluSp SINE Alu 1 303 -10 1696 202 65 28 chrX 10003020 10003372 -152596558 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chrX 10003634 10003660 -152596270 + AT_rich Low_complexity Low_complexity 1 26 0 226 211 0 0 chrX 10004380 10004418 -152595512 + (TG)n Simple_repeat Simple_repeat 2 39 0 1371 166 43 22 chrX 10004723 10004813 -152595117 - L1MA9 LINE L1 -35 6277 6190 2221 137 24 34 chrX 10004813 10005192 -152594738 + THE1C LTR MaLR 1 375 0 1371 166 43 22 chrX 10005192 10005221 -152594709 - L1MA9 LINE L1 -122 6190 6163 180 0 0 0 chrX 10005221 10005241 -152594689 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1371 166 43 22 chrX 10005241 10005397 -152594533 - L1MA9 LINE L1 -149 6163 5995 270 105 193 0 chrX 10005425 10005482 -152594448 - L1MB7 LINE L1 0 6184 6117 * 5754 97 10 4 chrX 10005472 10005600 -152594330 + L1PA13 LINE L1 5357 5483 -680 2330 118 0 3 chrX 10005600 10005914 -152594016 + AluSq SINE Alu 1 313 0 5754 97 10 4 chrX 10005914 10006582 -152593348 + L1PA13 LINE L1 5483 6158 -5 1885 155 0 7 chrX 10006582 10006873 -152593057 + AluJb SINE Alu 7 295 -17 298 157 0 86 chrX 10006890 10006960 -152592970 - L1MB7 LINE L1 -34 6150 6087 669 236 91 0 chrX 10007644 10007809 -152592121 + MER5A DNA MER1_type 10 189 0 1111 169 86 79 chrX 10008306 10008584 -152591346 - MER92B LTR ERV1 0 636 357 1206 177 22 26 chrX 10008617 10008849 -152591081 - MER92B LTR ERV1 -372 264 34 2046 119 53 87 chrX 10009762 10010140 -152589790 - MLT1A1 LTR MaLR 0 365 1 790 185 0 22 chrX 10010170 10010305 -152589625 + FLAM_A SINE Alu 1 132 -1 216 0 0 0 chrX 10010308 10010332 -152589598 + (TATG)n Simple_repeat Simple_repeat 4 27 0 2072 49 46 11 chrX 10010332 10010595 -152589335 + AluY SINE Alu 39 310 -1 649 131 29 36 chrX 10011955 10012092 -152587838 - LTR37A LTR ERV1 0 426 291 1424 150 4 34 chrX 10012102 10012336 -152587594 + AluJo SINE Alu 3 229 -83 261 0 0 0 chrX 10012350 10012379 -152587551 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 885 191 85 50 chrX 10012381 10012663 -152587267 - LTR37A LTR ERV1 -132 294 3 266 310 81 0 chrX 10012895 10012982 -152586948 - MER5A DNA MER1_type 0 189 96 188 333 67 0 chrX 10012917 10012992 -152586938 + MER5A DNA MER1_type 37 116 -73 * 1467 120 113 22 chrX 10013132 10013539 -152586391 - LTR54 LTR ERV1 0 510 1 4730 123 44 20 chrX 10013979 10014684 -152585246 - MER72 LTR ERV1 0 722 1 568 216 82 69 chrX 10016695 10016926 -152583004 - LTR50 LTR ERVL -36 759 526 238 204 0 0 chrX 10016927 10016971 -152582959 - MLT1A1 LTR MaLR 0 374 331 * 585 139 5 9 chrX 10016966 10017063 -152582867 + MLT1A1 LTR MaLR 253 339 -26 312 244 39 13 chrX 10017056 10017134 -152582796 - MLT1A1 LTR MaLR -119 246 167 * 898 212 0 22 chrX 10017172 10017351 -152582579 - MLT1A1 LTR MaLR -190 175 1 949 205 82 45 chrX 10017413 10017681 -152582249 - LTR50 LTR ERVL -517 278 1 215 301 12 12 chrX 10018700 10018783 -152581147 - MIR3 SINE MIR -3 205 123 296 211 33 125 chrX 10018849 10018973 -152580957 + MER5B DNA MER1_type 4 113 -65 2087 73 59 4 chrX 10018973 10019268 -152580662 - AluY SINE Alu 0 311 1 296 211 33 125 chrX 10019268 10019295 -152580635 + MER5B DNA MER1_type 113 141 -37 2358 171 47 64 chrX 10019537 10020051 -152579879 - MLT1D LTR MaLR 0 505 1 2006 192 6 3 chrX 10020992 10021341 -152578589 + MLT1A1 LTR MaLR 1 350 -15 261 0 0 0 chrX 10021347 10021376 -152578554 + (CAT)n Simple_repeat Simple_repeat 2 30 0 786 129 0 0 chrX 10021952 10022053 -152577877 - FLAM_A SINE Alu -20 122 22 207 0 0 0 chrX 10022559 10022582 -152577348 + (TG)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chrX 10022582 10022603 -152577327 + (T)n Simple_repeat Simple_repeat 1 21 0 2669 166 29 5 chrX 10023157 10023603 -152576327 - LTR32 LTR ERVL 0 471 15 526 103 0 39 chrX 10023584 10023662 -152576268 - LTR32 LTR ERVL -384 87 13 * 497 237 42 17 chrX 10023662 10023780 -152576150 - MIR SINE MIR -141 121 1 369 268 49 32 chrX 10026254 10026377 -152573553 + L2 LINE L2 3148 3272 0 292 224 75 60 chrX 10026591 10026725 -152573205 - MER104 DNA Tc2 -44 136 1 311 262 1 3 chrX 10026940 10027042 -152572888 + MLT1K LTR MaLR 495 612 -3 596 287 118 21 chrX 10027357 10027594 -152572336 + MIR SINE MIR 1 260 -2 379 221 262 13 chrX 10028238 10028387 -152571543 + MER5A DNA MER1_type 4 189 0 2587 137 26 12 chrX 10028956 10029381 -152570549 + MSTB1 LTR MaLR 2 432 0 267 291 146 46 chrX 10030160 10030311 -152569619 + MIR SINE MIR 84 249 -13 2621 112 16 66 chrX 10032307 10032865 -152567065 - MER4E LTR ERV1 0 766 71 2564 78 0 0 chrX 10032865 10033174 -152566756 + AluY SINE Alu 1 309 -2 2621 112 16 66 chrX 10033174 10033242 -152566688 - MER4E LTR ERV1 -695 71 1 286 263 45 57 chrX 10033877 10034124 -152565806 - L1ME3A LINE L1 -90 6063 5820 752 281 84 5 chrX 10034222 10034822 -152565108 - L1ME3A LINE L1 -516 5629 4982 22 35 0 0 chrX 10034960 10034989 -152564941 + AT_rich Low_complexity Low_complexity 1 29 0 350 279 94 25 chrX 10034995 10035433 -152564497 - L1ME3A LINE L1 -2707 3422 2955 411 246 0 9 chrX 10035447 10035557 -152564373 - L1ME3A LINE L1 0 6170 6062 366 239 98 43 chrX 10035564 10035727 -152564203 - L1ME3A LINE L1 -3170 2959 2788 753 248 76 14 chrX 10035742 10035952 -152563978 + MER58A DNA MER1_type 1 223 -1 326 266 84 58 chrX 10036006 10036352 -152563578 - L1ME3A LINE L1 -3462 2667 2313 742 275 77 50 chrX 10036889 10038120 -152561810 - L1MEd LINE L1 -4653 1657 351 323 268 45 45 chrX 10038272 10038429 -152561501 - L1MEd LINE L1 -5932 187 31 192 295 84 105 chrX 10038474 10038569 -152561361 + L2 LINE L2 3142 3234 -38 6220 94 19 48 chrX 10038574 10039562 -152560368 - HSMAR2 DNA Mariner 0 1302 343 1048 174 28 0 chrX 10039562 10039858 -152560072 + L1M3 LINE L1 5188 5490 -690 613 136 32 24 chrX 10039859 10039984 -152559946 + L1MB5 LINE L1 13 138 -7427 * 6667 169 12 1 chrX 10039977 10041116 -152558814 + L1MB5 LINE L1 701 1852 -5713 * 12124 153 13 23 chrX 10041112 10045310 -152554620 + L1MB5 LINE L1 4269 7723 0 1383 290 58 46 chrX 10045526 10046112 -152553818 - MLT1E LTR MaLR 0 593 1 243 79 0 0 chrX 10047808 10047846 -152552084 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1045 208 19 14 chrX 10048142 10048358 -152551572 - MER20 DNA MER1_type -2 217 1 222 37 0 0 chrX 10048393 10048420 -152551510 + (CAAAAA)n Simple_repeat Simple_repeat 6 32 0 1143 160 23 23 chrX 10048871 10049090 -152550840 + MER20 DNA MER1_type 1 219 0 22 56 0 0 chrX 10050443 10050479 -152549451 + AT_rich Low_complexity Low_complexity 1 36 0 244 67 0 0 chrX 10051493 10051523 -152548407 + L2 LINE L2 3261 3290 -23 236 143 71 0 chrX 10051523 10051535 -152548395 + MIR SINE MIR 216 260 -2 187 405 47 0 chrX 10051977 10052125 -152547805 - L2 LINE L2 -552 2762 2608 308 245 108 20 chrX 10052259 10052361 -152547569 - MLT1G1 LTR MaLR -16 579 469 292 248 69 10 chrX 10052552 10052653 -152547277 - MLT1I LTR MaLR -264 145 39 239 329 52 99 chrX 10055403 10055616 -152544314 + L2 LINE L2 2916 3118 -154 632 277 19 14 chrX 10055771 10055984 -152543946 + MER46C DNA MER2_type 108 321 -17 488 211 32 0 chrX 10057402 10057497 -152542433 + L2 LINE L2 3215 3312 -1 270 338 25 0 chrX 10057551 10057631 -152542299 - L2 LINE L2 0 3272 3191 271 310 85 16 chrX 10058052 10058181 -152541749 + MIR SINE MIR 95 232 -30 309 26 0 0 chrX 10058211 10058249 -152541681 + (TG)n Simple_repeat Simple_repeat 2 39 0 1821 165 32 0 chrX 10058250 10058529 -152541401 - AluSx SINE Alu -24 288 1 219 284 68 27 chrX 10058857 10058931 -152540999 - MER5B DNA MER1_type -3 175 99 946 193 6 17 chrX 10059990 10060171 -152539759 - MER5A DNA MER1_type -1 188 10 620 280 48 26 chrX 10061783 10062121 -152537809 + MLT1G1 LTR MaLR 1 350 -192 335 274 0 89 chrX 10063014 10063160 -152536770 - MIR SINE MIR -96 166 34 971 97 51 23 chrX 10063957 10064133 -152535797 + L1MA9 LINE L1 6130 6310 -2 22 80 0 0 chrX 10064689 10064739 -152535191 + AT_rich Low_complexity Low_complexity 1 50 0 361 238 113 39 chrX 10064903 10065053 -152534877 + MIR3 SINE MIR 5 164 -67 24 32 0 0 chrX 10065224 10065255 -152534675 + AT_rich Low_complexity Low_complexity 1 31 0 1020 218 5 14 chrX 10065294 10065514 -152534416 - MER58A DNA MER1_type -3 221 4 197 354 55 37 chrX 10065615 10065779 -152534151 - L2 LINE L2 -216 3056 2890 943 156 104 16 chrX 10066180 10066372 -152533558 - MER3 DNA MER1_type 0 209 1 209 351 37 0 chrX 10066432 10066566 -152533364 + MIR SINE MIR 51 189 -73 1331 169 0 50 chrX 10066682 10066731 -152533199 - L1M4 LINE L1 -1926 4220 4170 2479 58 7 0 chrX 10066731 10067023 -152532907 - AluSc SINE Alu -15 294 1 1331 169 0 50 chrX 10067023 10067275 -152532655 - L1M4 LINE L1 -1976 4170 3934 21 36 0 0 chrX 10068809 10068837 -152531093 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chrX 10069521 10069545 -152530385 + (TG)n Simple_repeat Simple_repeat 2 25 0 181 314 118 0 chrX 10070139 10070190 -152529740 + L2 LINE L2 2961 3017 -255 281 250 0 48 chrX 10070423 10070507 -152529423 + MLT1J LTR MaLR 99 178 -333 1876 164 30 87 chrX 10072910 10073228 -152526702 - MLT1C LTR MaLR 0 467 185 2277 109 3 3 chrX 10073228 10073541 -152526389 - AluSq SINE Alu 0 313 1 1876 164 30 87 chrX 10073541 10073717 -152526213 - MLT1C LTR MaLR -282 185 1 772 275 48 13 chrX 10073725 10074041 -152525889 - MER46C DNA MER2_type -9 329 3 227 31 31 0 chrX 10074218 10074250 -152525680 + (TC)n Simple_repeat Simple_repeat 2 34 0 1035 239 27 19 chrX 10074671 10074931 -152524999 - MIR SINE MIR 0 262 1 194 204 0 68 chrX 10075040 10075084 -152524846 + L2 LINE L2 3201 3241 -31 1020 272 69 67 chrX 10075098 10075503 -152524427 - MLT1J2 LTR MaLR -8 442 37 404 316 87 48 chrX 10075545 10075751 -152524179 - L3 LINE CR1 -957 620 407 518 253 24 59 chrX 10076728 10076898 -152523032 + MIR3 SINE MIR 16 179 -29 207 330 143 9 chrX 10076890 10077002 -152522928 + L2 LINE L2 3141 3267 -5 * 214 281 24 12 chrX 10077003 10077085 -152522845 + MIR SINE MIR 180 262 0 338 250 51 80 chrX 10077683 10077794 -152522136 + L2 LINE L2 25 131 -3183 1878 202 3 6 chrX 10077794 10078160 -152521770 + MLT1A1 LTR MaLR 1 365 0 338 250 51 80 chrX 10078160 10078224 -152521706 + L2 LINE L2 131 195 -3119 * 531 273 129 39 chrX 10078196 10078482 -152521448 + L2 LINE L2 2996 3307 -6 211 337 11 11 chrX 10079043 10079132 -152520798 + (TATG)n Simple_repeat Simple_repeat 3 91 0 * 226 308 0 0 chrX 10079095 10079160 -152520770 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 357 239 0 0 chrX 10079161 10079228 -152520702 - MIR SINE MIR -65 143 77 401 257 22 25 chrX 10079612 10079807 -152520123 - L1ME3A LINE L1 -288 5882 5703 798 294 47 60 chrX 10079812 10080261 -152519669 + L2 LINE L2 1938 2380 -934 1659 232 64 50 chrX 10080261 10080833 -152519097 + MLT1F1 LTR MaLR 1 567 0 257 281 309 0 chrX 10080845 10081023 -152518907 + L2 LINE L2 2379 2611 -703 593 337 24 20 chrX 10081746 10081998 -152517932 - L3 LINE CR1 -2 1575 1323 933 236 138 18 chrX 10082808 10083090 -152516840 - MLT1E1 LTR MaLR 0 624 232 6961 139 24 3 chrX 10083134 10084481 -152515449 - L1MC1 LINE L1 -2 6331 4964 1158 221 19 11 chrX 10084513 10084776 -152515154 - MLT1E1 LTR MaLR -389 265 1 206 264 0 0 chrX 10084797 10084850 -152515080 + MIR SINE MIR 103 155 -107 877 185 6 39 chrX 10086335 10086513 -152513417 + MER20 DNA MER1_type 1 172 -47 449 323 200 61 chrX 10086555 10088477 -152511453 - L2 LINE L2 -568 2746 558 2320 78 3 0 chrX 10088493 10088821 -152511109 - AluSp SINE Alu 0 329 1 1155 213 20 38 chrX 10090848 10091191 -152508739 + L1MC4 LINE L1 7264 7600 -442 2418 211 32 69 chrX 10092128 10092399 -152507531 - L1ME1 LINE L1 -61 6916 6637 2317 108 6 6 chrX 10092399 10092751 -152507179 - L1PA13 LINE L1 -1 6162 5811 2418 211 32 69 chrX 10092751 10093191 -152506739 - L1ME1 LINE L1 -340 6637 6231 1011 192 64 18 chrX 10093220 10093501 -152506429 - L1ME1 LINE L1 -855 6102 5809 3067 239 94 37 chrX 10093509 10093802 -152506128 - L1ME1 LINE L1 -2734 4223 3948 980 233 3 110 chrX 10093802 10094137 -152505793 - AluJb SINE Alu -3 299 1 3067 239 94 37 chrX 10094137 10094512 -152505418 - L1ME1 LINE L1 -3009 3948 3596 2231 119 3 0 chrX 10094512 10094824 -152505106 + AluSp SINE Alu 1 313 0 3067 239 94 37 chrX 10094824 10095378 -152504552 - L1ME1 LINE L1 -3361 3596 3075 1844 91 116 11 chrX 10095378 10095653 -152504277 - AluYa8 SINE Alu -6 304 1 3067 239 94 37 chrX 10095653 10097237 -152502693 - L1ME1 LINE L1 -3882 3075 1226 283 302 69 31 chrX 10097320 10097479 -152502451 - L1ME1 LINE L1 -5662 1193 1029 404 280 46 84 chrX 10097685 10098031 -152501899 - L1ME1 LINE L1 -6193 662 20 190 256 23 0 chrX 10098345 10098388 -152501542 - MIR3 SINE MIR -14 194 151 180 261 0 46 chrX 10099372 10099437 -152500493 - L2 LINE L2 -212 3060 2999 1612 193 40 6 chrX 10099783 10100110 -152499820 + MER58B DNA MER1_type 2 339 -2 257 266 147 28 chrX 10100120 10100229 -152499701 - L1MEd LINE L1 -5458 661 540 676 287 11 63 chrX 10100260 10100528 -152499402 - L1MEd LINE L1 -5528 591 338 3275 189 132 12 chrX 10101117 10101874 -152498056 - MER21B LTR ERV1 -1 862 9 237 266 0 0 chrX 10101882 10102025 -152497905 + (TA)n Simple_repeat Simple_repeat 1 143 0 381 266 26 13 chrX 10102121 10102275 -152497655 + L1M4 LINE L1 2894 3049 -3097 5729 158 25 10 chrX 10102323 10104335 -152495595 - L1PA16 LINE L1 -9 6157 4126 586 165 0 0 chrX 10104336 10104427 -152495503 + Tigger3b DNA MER2_type 12 102 -1129 * 5563 121 24 20 chrX 10104425 10105379 -152494551 + Tigger3b DNA MER2_type 274 1231 0 277 125 31 0 chrX 10105396 10105460 -152494470 - L1M4 LINE L1 -2926 3220 3155 811 294 66 28 chrX 10105542 10105936 -152493994 + L1ME3A LINE L1 5540 5948 -222 184 297 47 31 chrX 10106462 10106526 -152493404 - L3b LINE CR1 0 1583 1519 * 188 157 0 157 chrX 10106492 10106543 -152493387 - MIR3 SINE MIR -35 173 131 207 195 24 0 chrX 10106558 10106599 -152493331 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 27 0 0 0 chrX 10106819 10106846 -152493084 + AT_rich Low_complexity Low_complexity 1 27 0 1896 135 0 4 chrX 10107880 10108146 -152491784 + AluSx SINE Alu 1 265 -47 1073 54 11 38 chrX 10108146 10108330 -152491600 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 231 36 0 0 chrX 10108330 10108358 -152491572 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1224 164 127 55 chrX 10108549 10108903 -152491027 - MER39 LTR ERV1 0 652 336 241 216 117 53 chrX 10109287 10109458 -152490472 + L2 LINE L2 3047 3228 -85 25 65 0 0 chrX 10109604 10109650 -152490280 + AT_rich Low_complexity Low_complexity 1 46 0 633 119 99 0 chrX 10109650 10109751 -152490179 - HY1 scRNA scRNA -1 111 1 661 150 83 0 chrX 10109827 10109960 -152489970 + L1MA9 LINE L1 6164 6307 -5 2358 175 47 2 chrX 10110071 10110477 -152489453 + MSTB LTR MaLR 1 424 -2 23 33 0 0 chrX 10110851 10110881 -152489049 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 10110933 10110956 -152488974 + AT_rich Low_complexity Low_complexity 1 23 0 2128 127 91 11 chrX 10110959 10111501 -152488429 - MER39B LTR ERV1 0 653 1 400 286 63 23 chrX 10111532 10111707 -152488223 - L1MC4a LINE L1 -1929 5879 5698 604 182 91 26 chrX 10112387 10112541 -152487389 - MLT1E1 LTR MaLR -1 653 490 1417 228 57 54 chrX 10112840 10113300 -152486630 - LTR48B LTR ERV1 -183 461 1 38 61 0 0 chrX 10113458 10113524 -152486406 + AT_rich Low_complexity Low_complexity 1 66 0 1026 166 14 54 chrX 10113558 10113781 -152486149 + MER20 DNA MER1_type 2 215 -4 287 323 125 15 chrX 10113892 10114285 -152485645 - L1M4 LINE L1 -3382 2764 2329 3012 120 37 8 chrX 10114287 10114771 -152485159 - L1PA16 LINE L1 -4 6162 5665 658 88 39 0 chrX 10114792 10114894 -152485036 - MER39B LTR ERV1 -458 195 90 2130 112 8 36 chrX 10114926 10115282 -152484648 - L1PA16 LINE L1 -509 5657 5312 3167 123 74 2 chrX 10115796 10116307 -152483623 - MER34C LTR ERV1 -3 582 35 21 0 0 0 chrX 10116844 10116865 -152483065 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 10117245 10117267 -152482663 + AT_rich Low_complexity Low_complexity 1 22 0 777 153 0 0 chrX 10117310 10117434 -152482496 - AluSg/x SINE Alu -8 304 181 502 278 70 54 chrX 10117534 10117917 -152482013 - L1M4 LINE L1 -1767 4379 4004 1732 156 7 4 chrX 10117917 10118186 -152481744 + AluJo SINE Alu 6 275 -37 213 65 0 0 chrX 10118194 10118225 -152481705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 502 278 70 54 chrX 10118225 10118329 -152481601 - L1M4 LINE L1 -2148 3998 3875 875 196 6 39 chrX 10118393 10118572 -152481358 + AluJo SINE Alu 105 277 -35 303 281 58 22 chrX 10118592 10118731 -152481199 - L1M4 LINE L1 -2632 3514 3371 221 211 39 0 chrX 10119013 10119065 -152480865 - MIR SINE MIR -13 249 196 2231 106 3 10 chrX 10121683 10121994 -152477936 - AluSg SINE Alu -1 309 1 2261 111 3 0 chrX 10122212 10122540 -152477390 - AluSg SINE Alu 0 329 1 2398 204 8 37 chrX 10122676 10123191 -152476739 + MLT1D LTR MaLR 6 505 0 1223 293 270 21 chrX 10123653 10125090 -152474840 - L2 LINE L2 -9 3304 1498 424 292 8 36 chrX 10125473 10125729 -152474201 + GA-rich Low_complexity Low_complexity 1 248 0 216 259 0 0 chrX 10125810 10125891 -152474039 + G-rich Low_complexity Low_complexity 1 81 0 217 358 0 22 chrX 10126469 10126603 -152473327 + CT-rich Low_complexity Low_complexity 4 134 0 264 295 52 69 chrX 10126778 10126951 -152472979 - MIR SINE MIR -85 177 8 950 190 0 11 chrX 10127285 10127459 -152472471 - FRAM SINE Alu -4 172 1 189 74 0 0 chrX 10128220 10128247 -152471683 + (TA)n Simple_repeat Simple_repeat 2 28 0 277 298 105 21 chrX 10128309 10128546 -152471384 - L1ME3 LINE L1 -258 5904 5650 994 251 63 25 chrX 10128557 10128876 -152471054 - MER58B DNA MER1_type -10 331 1 345 304 52 47 chrX 10129173 10129364 -152470566 - L1ME3 LINE L1 -758 5388 5197 1801 138 35 3 chrX 10130333 10130645 -152469285 + L1MC1 LINE L1 5989 6310 -23 243 186 0 43 chrX 10131195 10131265 -152468665 + T-rich Low_complexity Low_complexity 3 69 0 402 21 0 0 chrX 10131554 10131601 -152468329 + (TG)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chrX 10132989 10133009 -152466921 + (TC)n Simple_repeat Simple_repeat 1 20 0 1721 248 62 27 chrX 10133088 10133605 -152466325 - MLT1E LTR MaLR -1 592 58 996 211 0 44 chrX 10133908 10134136 -152465794 - MER20 DNA MER1_type 0 219 2 403 248 0 0 chrX 10135478 10135579 -152464351 - MER94 DNA DNA -32 102 2 2665 93 3 0 chrX 10137380 10137734 -152462196 + THE1A LTR MaLR 1 355 0 12071 84 6 1 chrX 10137734 10139307 -152460623 + THE1A-int LTR MaLR 1 1580 0 2763 75 0 17 chrX 10139307 10139668 -152460262 + THE1A LTR MaLR 1 355 0 23 0 0 0 chrX 10140462 10140485 -152459445 + AT_rich Low_complexity Low_complexity 1 23 0 960 174 0 36 chrX 10140594 10140761 -152459169 + FRAM SINE Alu 1 153 -23 24 0 0 0 chrX 10140767 10140791 -152459139 + AT_rich Low_complexity Low_complexity 1 24 0 1923 166 11 0 chrX 10140808 10141092 -152458838 + AluJb SINE Alu 5 291 -21 357 62 0 0 chrX 10141280 10141328 -152458602 + (TG)n Simple_repeat Simple_repeat 1 48 0 379 300 31 0 chrX 10141410 10141570 -152458360 - MER103 DNA DNA -1 165 1 1465 235 132 41 chrX 10141897 10142437 -152457493 - MLT1E LTR MaLR -2 591 3 282 271 79 50 chrX 10143257 10143315 -152456615 + MIR3 SINE MIR 3 58 -150 1592 177 84 26 chrX 10143315 10143660 -152456270 - MLT1A1 LTR MaLR 0 365 1 282 271 79 50 chrX 10143660 10143741 -152456189 + MIR3 SINE MIR 58 146 -62 954 237 67 19 chrX 10144021 10144333 -152455597 - L1ME3A LINE L1 -1 6169 5843 1415 235 48 42 chrX 10144568 10145076 -152454854 - L1ME3A LINE L1 -395 5775 5266 2844 128 14 2 chrX 10145472 10145895 -152454035 + MSTA LTR MaLR 1 428 0 594 273 19 46 chrX 10146468 10146684 -152453246 - MIR SINE MIR -36 226 17 946 241 18 35 chrX 10146684 10146912 -152453018 - MER58A DNA MER1_type 0 224 1 883 232 43 5 chrX 10147011 10147222 -152452708 + MER20 DNA MER1_type 1 219 0 197 336 66 25 chrX 10147374 10147496 -152452434 - MIR SINE MIR -12 250 124 860 292 100 22 chrX 10148084 10148685 -152451245 - L2 LINE L2 -1 3312 2664 290 306 0 0 chrX 10148823 10148895 -152451035 - MIR3 SINE MIR -17 191 120 279 246 15 15 chrX 10149095 10149160 -152450770 - L2 LINE L2 -182 3090 3026 222 222 11 89 chrX 10149652 10149742 -152450188 - MIR SINE MIR -64 198 116 536 356 11 0 chrX 10149982 10150173 -152449757 + MIR SINE MIR 14 206 -56 1235 231 72 6 chrX 10150377 10150478 -152449452 + MER58B DNA MER1_type 1 94 -2326 1717 181 13 17 chrX 10150478 10150777 -152449153 + AluJo SINE Alu 1 298 -14 1235 231 72 6 chrX 10150777 10150995 -152448935 + MER58B DNA MER1_type 94 341 0 423 339 166 11 chrX 10151017 10151294 -152448636 - L3 LINE CR1 -113 1464 1145 207 315 19 0 chrX 10151409 10151463 -152448467 + L2 LINE L2 3158 3212 -60 442 369 127 14 chrX 10151574 10151991 -152447939 - L3 LINE CR1 -561 1016 553 1778 174 3 13 chrX 10151991 10152289 -152447641 + AluJo SINE Alu 7 301 -11 3309 164 20 30 chrX 10152772 10153472 -152446458 - L1MB8 LINE L1 -1 6177 5485 183 129 0 0 chrX 10153636 10153667 -152446263 + (A)n Simple_repeat Simple_repeat 1 31 0 877 208 63 10 chrX 10153990 10154197 -152445733 + MER20 DNA MER1_type 1 218 -1 1909 4 8 34 chrX 10154369 10154604 -152445326 + L1PA3 LINE L1 5916 6144 -11 519 263 60 0 chrX 10155160 10155293 -152444637 + MIR SINE MIR 8 148 -114 1096 202 9 9 chrX 10155303 10155521 -152444409 + MER58A DNA MER1_type 1 218 -6 322 273 154 0 chrX 10155708 10155818 -152444112 - MIR SINE MIR -74 188 62 664 301 47 55 chrX 10156630 10157015 -152442915 - L3 LINE CR1 -95 1482 1101 219 146 0 24 chrX 10157100 10157141 -152442789 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 322 266 32 32 chrX 10157142 10157266 -152442664 - L1ME4a LINE L1 -66 6055 5932 243 323 10 40 chrX 10157449 10157548 -152442382 - L3 LINE CR1 -467 1110 1015 611 224 35 7 chrX 10158531 10158674 -152441256 + MIR SINE MIR 116 262 0 921 182 34 0 chrX 10158821 10158997 -152440933 - MER58A DNA MER1_type -3 221 40 241 227 30 45 chrX 10159058 10159190 -152440740 - L1ME4a LINE L1 -5 6116 5987 1950 183 34 13 chrX 10159277 10159665 -152440265 - MSTD LTR MaLR 0 396 1 650 274 52 14 chrX 10160056 10160268 -152439662 - MIR SINE MIR -3 259 40 227 280 0 54 chrX 10161277 10161370 -152438560 - L2 LINE L2 -1 3271 3184 35924 50 3 102 chrX 10161977 10168811 -152431119 + L1PA5 LINE L1 11 6146 -8 25 51 0 0 chrX 10168860 10168899 -152431031 + AT_rich Low_complexity Low_complexity 1 39 0 28 61 0 0 chrX 10168925 10168974 -152430956 + AT_rich Low_complexity Low_complexity 1 49 0 519 291 90 53 chrX 10168989 10169288 -152430642 + MLT1K LTR MaLR 2 311 -277 406 300 47 47 chrX 10169340 10169528 -152430402 + MLT1K LTR MaLR 326 516 -72 2064 156 111 32 chrX 10169528 10169799 -152430131 - MLT1D LTR MaLR 0 505 257 210 37 0 0 chrX 10169799 10169826 -152430104 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 2064 156 111 32 chrX 10169826 10170022 -152429908 - MLT1D LTR MaLR -248 257 1 406 300 47 47 chrX 10170022 10170086 -152429844 + MLT1K LTR MaLR 515 578 -10 1381 153 63 0 chrX 10171495 10171717 -152428213 - AluJb SINE Alu -76 236 1 186 43 0 0 chrX 10172504 10172527 -152427403 + (TC)n Simple_repeat Simple_repeat 2 24 0 861 235 10 0 chrX 10172729 10172929 -152427001 - MER105 DNA DNA -2 202 1 253 188 47 47 chrX 10173419 10173483 -152426447 + MIR SINE MIR 83 146 -116 457 146 11 11 chrX 10173540 10173629 -152426301 - L1PB2 LINE L1 -7 6144 6056 300 309 37 25 chrX 10175762 10175924 -152424006 + L3b LINE CR1 1102 1265 -318 515 167 0 0 chrX 10176650 10176734 -152423196 + AluJ/FLAM SINE Alu 1 84 -228 311 243 10 78 chrX 10177138 10177241 -152422689 + Charlie1b DNA MER1_type 1 96 -427 247 246 0 18 chrX 10177246 10177360 -152422570 + (TAA)n Simple_repeat Simple_repeat 3 114 0 1605 144 89 10 chrX 10177360 10177743 -152422187 + Charlie1b DNA MER1_type 81 493 -30 689 310 57 8 chrX 10178180 10178425 -152421505 - MIR SINE MIR -1 261 5 460 219 161 19 chrX 10178659 10178814 -152421116 - MLT1J2 LTR MaLR -233 217 41 662 293 11 0 chrX 10179064 10179238 -152420692 - MER91B DNA MER1_type -13 177 2 2006 151 13 13 chrX 10179365 10179677 -152420253 - AluSx SINE Alu 0 312 1 690 223 27 0 chrX 10179836 10179984 -152419946 - MER20 DNA MER1_type 0 219 68 452 298 159 22 chrX 10180127 10180436 -152419494 + L2 LINE L2 2713 3054 -218 389 325 50 0 chrX 10181016 10181136 -152418794 + L2 LINE L2 3147 3272 0 2628 109 5 5 chrX 10183453 10183828 -152416102 - THE1C LTR MaLR 0 375 1 10155 110 37 34 chrX 10183828 10185404 -152414526 - THE1C-int LTR MaLR 0 1580 1 2590 96 27 0 chrX 10185404 10185769 -152414161 - THE1C LTR MaLR 0 375 1 350 333 56 31 chrX 10185920 10186082 -152413848 + MIR SINE MIR 17 182 -80 297 0 0 0 chrX 10186342 10186375 -152413555 + (GA)n Simple_repeat Simple_repeat 2 34 0 269 349 34 20 chrX 10186450 10186596 -152413334 - MLT1L LTR MaLR -124 491 344 316 295 27 18 chrX 10186721 10186833 -152413097 + L2 LINE L2 3201 3313 0 249 387 51 7 chrX 10187680 10187817 -152412113 - MIR3 SINE MIR -47 161 19 284 285 16 57 chrX 10188022 10188145 -152411785 + MIR SINE MIR 100 217 -45 2876 273 89 32 chrX 10188297 10189427 -152410503 - L2 LINE L2 -655 2659 1465 779 169 0 0 chrX 10189449 10189610 -152410320 - FLAM_C SINE Alu 0 162 2 991 187 0 0 chrX 10189662 10189828 -152410102 - AluJb SINE Alu -10 302 137 1100 274 93 46 chrX 10189863 10190675 -152409255 + L2 LINE L2 2455 3313 0 340 215 0 0 chrX 10191183 10191248 -152408682 - MIR SINE MIR -111 151 87 186 161 0 0 chrX 10191405 10191436 -152408494 - MIR3 SINE MIR -23 185 155 1153 247 21 132 chrX 10192423 10193130 -152406800 - L2 LINE L2 0 3313 2701 402 21 0 0 chrX 10193130 10193177 -152406753 + (CA)n Simple_repeat Simple_repeat 2 48 0 1153 247 21 132 chrX 10193177 10193230 -152406700 - L2 LINE L2 -612 2701 2644 180 0 0 0 chrX 10194045 10194065 -152405865 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 22 70 0 0 chrX 10194891 10194934 -152404996 + GC_rich Low_complexity Low_complexity 1 43 0 1688 167 93 0 chrX 10199475 10199787 -152400143 + MER58B DNA MER1_type 1 341 0 189 26 79 0 chrX 10200999 10201037 -152398893 + (TA)n Simple_repeat Simple_repeat 2 42 0 700 166 108 0 chrX 10201842 10201981 -152397949 + MER58B DNA MER1_type 167 320 -21 2458 77 0 7 chrX 10202321 10202631 -152397299 + AluY SINE Alu 1 308 -3 195 186 0 0 chrX 10202691 10202734 -152397196 + (CA)n Simple_repeat Simple_repeat 2 44 0 325 347 52 47 chrX 10202734 10202947 -152396983 + L2 LINE L2 2864 3077 -195 565 313 78 4 chrX 10203053 10203321 -152396609 - MLT1J1 LTR MaLR -108 338 51 441 247 54 38 chrX 10203373 10203559 -152396371 + MLT1H LTR MaLR 1 189 -360 15313 111 19 17 chrX 10203905 10205365 -152394565 + Tigger1 DNA MER2_type 6 1474 -944 785 108 0 0 chrX 10205365 10205476 -152394454 + HY1 scRNA scRNA 1 111 -1 15313 111 19 17 chrX 10205476 10206423 -152393507 + Tigger1 DNA MER2_type 1474 2418 0 238 243 0 0 chrX 10206859 10206929 -152393001 + L1ME4a LINE L1 6049 6118 -3 810 100 0 8 chrX 10206950 10207070 -152392860 + Tigger1 DNA MER2_type 1283 1401 -1017 291 188 12 47 chrX 10207356 10207441 -152392489 + L1MC4a LINE L1 5808 5889 -1919 21 0 0 0 chrX 10207631 10207652 -152392278 + AT_rich Low_complexity Low_complexity 1 21 0 336 266 156 0 chrX 10207964 10208118 -152391812 - L1ME4a LINE L1 -268 5853 5676 420 222 0 34 chrX 10208532 10208649 -152391281 + L1MC4a LINE L1 5793 5905 -1903 2732 13 0 10 chrX 10209163 10209468 -152390462 - AluYb8 SINE Alu -9 309 8 1462 189 94 3 chrX 10209998 10210305 -152389625 + MER58B DNA MER1_type 4 338 -3 404 250 69 132 chrX 10211011 10211407 -152388523 - MLT1L LTR MaLR -109 506 37 662 261 111 70 chrX 10211594 10212035 -152387895 - MLT1L LTR MaLR -9 606 148 1155 184 4 43 chrX 10212038 10212271 -152387659 + MER58A DNA MER1_type 1 224 0 387 298 9 18 chrX 10212330 10212483 -152387447 + MER20B DNA MER1_type 64 219 0 328 262 0 0 chrX 10212559 10212643 -152387287 - MLT1L LTR MaLR -517 98 15 296 203 0 0 chrX 10213285 10213344 -152386586 + MER112 DNA MER1_type 19 77 -183 659 190 180 14 chrX 10214788 10214999 -152384931 - L1ME3A LINE L1 -175 5995 5750 302 253 44 0 chrX 10215002 10215093 -152384837 - L1ME3A LINE L1 -456 5714 5620 249 191 90 56 chrX 10215313 10215402 -152384528 - MLT1J1 LTR MaLR -6 440 349 380 243 62 14 chrX 10215508 10215652 -152384278 - MLT1J1 LTR MaLR -295 151 1 369 93 0 0 chrX 10216308 10216362 -152383568 + (TG)n Simple_repeat Simple_repeat 2 55 0 211 224 0 0 chrX 10217151 10217200 -152382730 + (TTA)n Simple_repeat Simple_repeat 2 50 0 285 146 0 0 chrX 10217300 10217348 -152382582 + (CTG)n Simple_repeat Simple_repeat 1 48 0 683 210 95 91 chrX 10217369 10217403 -152382527 - MIR SINE MIR -9 253 221 2000 153 0 0 chrX 10217403 10217698 -152382232 - AluSx SINE Alu -17 295 1 683 210 95 91 chrX 10217698 10217915 -152382015 - MIR SINE MIR -41 221 1 212 128 51 0 chrX 10219587 10219626 -152380304 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 234 0 0 0 chrX 10219702 10219728 -152380202 + (A)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chrX 10220240 10220273 -152379657 + AT_rich Low_complexity Low_complexity 1 33 0 21598 33 0 0 chrX 10220285 10223675 -152376255 - L1PA4 LINE L1 0 6155 2769 946 194 10 20 chrX 10224185 10224386 -152375544 + MER20 DNA MER1_type 18 216 -3 403 284 46 35 chrX 10224389 10224586 -152375344 + MLT1J2 LTR MaLR 250 448 -2 2472 66 0 0 chrX 10224862 10225163 -152374767 - AluY SINE Alu -9 302 2 975 235 14 27 chrX 10225713 10225934 -152373996 + MER58A DNA MER1_type 5 222 -2 438 224 42 42 chrX 10225940 10226105 -152373825 - HsTC2a DNA Tc2 -127 615 451 514 202 21 0 chrX 10226116 10226210 -152373720 - MER58A DNA MER1_type -7 100 5 756 239 127 52 chrX 10226257 10226658 -152373272 - HsTC2a DNA Tc2 -311 433 3 1152 67 93 72 chrX 10228385 10228578 -152371352 - MER107 DNA MER1_type 0 197 1 999 143 6 6 chrX 10228724 10228885 -152371045 - MER5A DNA MER1_type -25 164 4 266 185 139 74 chrX 10228912 10229020 -152370910 + MLT1E3 LTR MaLR 214 332 -292 1629 186 73 6 chrX 10230314 10230631 -152369299 - MER58B DNA MER1_type -2 339 2 333 209 418 8 chrX 10230873 10231007 -152368923 - MER5A DNA MER1_type 0 189 1 219 295 124 38 chrX 10231252 10231357 -152368573 + L2 LINE L2 3180 3293 -20 733 194 42 63 chrX 10231649 10231775 -152368155 + MER5A DNA MER1_type 3 125 -64 2046 108 25 0 chrX 10231775 10232053 -152367877 - AluSq SINE Alu -28 285 1 733 194 42 63 chrX 10232053 10232117 -152367813 + MER5A DNA MER1_type 125 189 0 388 208 0 0 chrX 10232129 10232201 -152367729 - MER5B DNA MER1_type -3 175 104 790 212 61 40 chrX 10232203 10232401 -152367529 + MER63A DNA MER1_type 3 204 -6 501 198 10 30 chrX 10232406 10232507 -152367423 - MER5B DNA MER1_type -67 111 13 330 295 25 0 chrX 10233434 10233556 -152366374 + L1MC5 LINE L1 7789 7913 -48 490 268 24 8 chrX 10233924 10234047 -152365883 - L2 LINE L2 -1 3312 3188 2064 191 0 3 chrX 10234214 10234580 -152365350 + MLT1A1 LTR MaLR 1 365 0 409 239 35 35 chrX 10234829 10234942 -152364988 - L2 LINE L2 0 3272 3160 1180 258 67 39 chrX 10235144 10235668 -152364262 - MLT1H LTR MaLR -2 588 8 244 311 54 0 chrX 10235670 10235744 -152364186 - L2 LINE L2 -1022 2292 2215 791 183 74 45 chrX 10236376 10236578 -152363352 - MER3 DNA MER1_type 0 209 2 761 318 184 27 chrX 10236802 10236899 -152363031 + L3 LINE CR1 747 827 -750 914 248 13 22 chrX 10236899 10237125 -152362805 - MER58A DNA MER1_type 0 224 1 761 318 184 27 chrX 10237125 10237734 -152362196 + L3 LINE CR1 827 1564 -13 975 286 111 49 chrX 10237739 10237877 -152362053 - MLT1K LTR MaLR -20 568 440 965 215 6 0 chrX 10237877 10238054 -152361876 - MER45A DNA AcHobo 0 178 1 975 286 111 49 chrX 10238054 10238429 -152361501 - MLT1K LTR MaLR -148 440 23 195 69 0 0 chrX 10238799 10238828 -152361102 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 365 307 31 8 chrX 10239213 10239340 -152360590 + MIR SINE MIR 13 142 -120 3699 79 6 24 chrX 10240840 10241386 -152358544 + L1MA2 LINE L1 5769 6304 0 197 286 93 57 chrX 10241548 10241688 -152358242 - MER5B DNA MER1_type -1 177 33 37 62 0 0 chrX 10242574 10242639 -152357291 + AT_rich Low_complexity Low_complexity 1 65 0 569 218 9 109 chrX 10243767 10243978 -152355952 - MER112 DNA MER1_type -6 254 65 205 313 0 0 chrX 10243983 10244050 -152355880 + (TATG)n Simple_repeat Simple_repeat 2 68 0 323 296 88 8 chrX 10244306 10244431 -152355499 + MIR SINE MIR 6 140 -122 426 326 42 14 chrX 10244527 10244671 -152355259 + MIR SINE MIR 88 235 -27 7828 187 43 19 chrX 10245147 10248300 -152351630 + L1MC1 LINE L1 3110 6331 -2 1020 188 16 0 chrX 10248919 10249105 -152350825 - MER5A DNA MER1_type 0 189 1 785 124 8 0 chrX 10249992 10250121 -152349809 + (GGAA)n Simple_repeat Simple_repeat 4 133 0 1419 233 95 40 chrX 10251509 10252033 -152347897 - MER68 LTR ERV1 -7 555 3 200 143 57 0 chrX 10252869 10252939 -152346991 + (TA)n Simple_repeat Simple_repeat 1 74 0 217 242 23 181 chrX 10254583 10254798 -152345132 - MER5A DNA MER1_type 0 189 9 438 20 0 0 chrX 10255477 10255528 -152344402 + (TG)n Simple_repeat Simple_repeat 2 52 0 370 294 114 5 chrX 10255763 10255899 -152344031 + L1ME4a LINE L1 5617 5780 -341 4081 130 8 65 chrX 10255899 10256632 -152343298 - LTR8 LTR ERV1 0 691 1 370 294 114 5 chrX 10256632 10256679 -152343251 + L1ME4a LINE L1 5780 5820 -301 24 0 0 0 chrX 10256714 10256738 -152343192 + AT_rich Low_complexity Low_complexity 1 24 0 852 170 0 0 chrX 10256738 10256873 -152343057 - AluJo SINE Alu -177 135 1 1702 148 60 76 chrX 10256960 10257379 -152342551 - LTR37A LTR ERV1 -11 415 4 285 219 61 9 chrX 10257420 10257534 -152342396 + L1ME4a LINE L1 6002 6121 0 1787 197 39 58 chrX 10258855 10259322 -152340608 + MLT1C LTR MaLR 10 467 0 226 265 17 88 chrX 10259407 10259588 -152340342 - LTR33A LTR ERVL 0 523 356 1025 140 31 79 chrX 10260314 10260543 -152339387 + MER20 DNA MER1_type 2 219 0 460 249 208 17 chrX 10261384 10261557 -152338373 - L3b LINE CR1 -24 1559 1354 21 100 0 0 chrX 10261583 10261653 -152338277 + AT_rich Low_complexity Low_complexity 1 70 0 200 312 205 39 chrX 10262291 10262427 -152337503 + MIR SINE MIR 18 130 -132 210 71 0 0 chrX 10262427 10262455 -152337475 + (TTAAA)n Simple_repeat Simple_repeat 5 32 0 200 312 205 39 chrX 10262455 10262523 -152337407 + MIR SINE MIR 130 256 -6 1012 300 50 65 chrX 10262610 10263134 -152336796 + LTR67 LTR ERVL 40 555 -2 445 293 87 79 chrX 10263693 10264185 -152335745 + L1ME LINE L1 36 531 -5539 285 345 5 10 chrX 10264319 10264525 -152335405 + L1ME LINE L1 531 735 -5526 24 67 0 0 chrX 10265388 10265433 -152334497 + AT_rich Low_complexity Low_complexity 1 45 0 770 197 101 56 chrX 10268336 10268534 -152331396 - MER58C DNA MER1_type -8 207 1 432 229 116 53 chrX 10268574 10268869 -152331061 + MLT1J LTR MaLR 59 495 -16 21 0 0 0 chrX 10271145 10271166 -152328764 + AT_rich Low_complexity Low_complexity 1 21 0 230 200 0 50 chrX 10271301 10271361 -152328569 + MER116 DNA Mariner 1 57 -23 194 224 20 20 chrX 10271741 10271790 -152328140 - L2 LINE L2 -11 3261 3213 * 693 174 56 28 chrX 10271757 10271901 -152328029 - MIR SINE MIR -21 241 94 200 333 49 12 chrX 10271980 10272061 -152327869 + L2 LINE L2 2882 2965 -349 1047 190 41 41 chrX 10272064 10272285 -152327645 + MER58A DNA MER1_type 4 224 0 866 232 76 54 chrX 10272314 10272830 -152327100 - MLT1G1 LTR MaLR -2 588 3 344 106 0 0 chrX 10273658 10273705 -152326225 + tRNA-Met-e tRNA tRNA 6 52 -23 1041 221 33 0 chrX 10273893 10274106 -152325824 + MER58A DNA MER1_type 1 220 -4 440 271 31 31 chrX 10275175 10275304 -152324626 - MIR3 SINE MIR -49 159 31 1746 195 13 0 chrX 10275326 10275624 -152324306 + AluJb SINE Alu 1 302 -10 289 367 73 11 chrX 10275761 10275938 -152323992 - MER5A DNA MER1_type -1 188 1 269 146 0 21 chrX 10276049 10276097 -152323833 - MLT1I LTR MaLR 0 409 363 2245 107 3 3 chrX 10276101 10276451 -152323479 + AluSp SINE Alu 3 313 0 498 237 115 6 chrX 10276577 10276733 -152323197 - L1ME3A LINE L1 -11 6159 5987 462 264 43 14 chrX 10276775 10276915 -152323015 - MLT1J2 LTR MaLR -286 164 21 254 303 31 49 chrX 10277775 10277937 -152321993 - L2 LINE L2 -220 3052 2894 240 262 24 0 chrX 10278092 10278176 -152321754 + L1ME LINE L1 5759 5844 -277 773 197 0 0 chrX 10278290 10278422 -152321508 + FLAM_C SINE Alu 1 132 -11 21 36 0 0 chrX 10278428 10278456 -152321474 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chrX 10278543 10278574 -152321356 + AT_rich Low_complexity Low_complexity 1 31 0 3289 223 22 15 chrX 10278732 10279305 -152320625 - L1ME1 LINE L1 -9 6157 5575 3540 133 13 2 chrX 10279305 10279860 -152320070 + L1PA15 LINE L1 5605 6165 0 3289 223 22 15 chrX 10279860 10280142 -152319788 - L1ME1 LINE L1 -591 5575 5296 964 209 58 5 chrX 10280185 10280391 -152319539 - MER20 DNA MER1_type -2 217 1 1329 159 0 5 chrX 10280464 10280705 -152319225 - AluJb SINE Alu 0 324 85 184 230 270 50 chrX 10282197 10282297 -152317633 + MIR SINE MIR 141 262 0 1129 152 0 11 chrX 10282335 10282519 -152317411 - AluJb SINE Alu -4 308 127 2409 204 23 18 chrX 10282734 10283248 -152316682 - LTR40a LTR ERVL -2 517 1 30 0 0 0 chrX 10283310 10283340 -152316590 + AT_rich Low_complexity Low_complexity 1 30 0 1953 171 0 0 chrX 10283758 10284051 -152315879 + AluJo SINE Alu 1 293 -19 345 47 0 0 chrX 10284051 10284094 -152315836 + (GA)n Simple_repeat Simple_repeat 2 44 0 268 325 13 13 chrX 10284377 10284534 -152315396 - MER103 DNA DNA -7 159 3 335 331 69 0 chrX 10285542 10285687 -152314243 + MIR SINE MIR 88 242 -20 182 338 86 39 chrX 10285863 10286224 -152313706 + L2 LINE L2 1613 1990 -1324 31 26 0 0 chrX 10287088 10287126 -152312804 + AT_rich Low_complexity Low_complexity 1 38 0 700 11 32 75 chrX 10287127 10287315 -152312615 + (TA)n Simple_repeat Simple_repeat 1 180 0 834 183 0 0 chrX 10287315 10287452 -152312478 - AluJb SINE Alu -38 274 138 301 271 100 2 chrX 10287474 10287644 -152312286 + MIR SINE MIR 1 227 -35 193 275 0 62 chrX 10287798 10287878 -152312052 - MER5B DNA MER1_type -1 177 103 * 270 264 12 49 chrX 10287819 10287912 -152312018 + MER5A DNA MER1_type 21 121 -68 467 234 9 0 chrX 10288215 10288322 -152311608 + MER94 DNA DNA 24 131 -3 2461 95 32 16 chrX 10288452 10288821 -152311109 - THE1C LTR MaLR 0 375 1 275 345 62 0 chrX 10289027 10289140 -152310790 - L2 LINE L2 -46 3226 3107 909 122 21 43 chrX 10289482 10289670 -152310260 + MER53 DNA DNA 6 189 0 247 248 99 20 chrX 10290050 10290151 -152309779 + L2 LINE L2 3200 3308 -5 260 27 27 0 chrX 10290217 10290254 -152309676 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 202 233 133 33 chrX 10291227 10291287 -152308643 - L2 LINE L2 0 3272 3207 553 245 162 10 chrX 10292005 10292209 -152307721 + MIR SINE MIR 20 254 -8 291 308 70 26 chrX 10292360 10292546 -152307384 + MIR SINE MIR 19 216 -46 243 157 0 59 chrX 10292579 10292630 -152307300 - MIR SINE MIR -9 253 206 1037 179 19 5 chrX 10293091 10293298 -152306632 + MER20 DNA MER1_type 10 219 0 735 204 26 0 chrX 10294194 10294346 -152305584 + MER58A DNA MER1_type 46 201 -23 2088 84 3 50 chrX 10294348 10294678 -152305252 - AluSp SINE Alu 0 316 1 291 282 154 13 chrX 10295693 10295842 -152304088 - MLT1J2 LTR MaLR 0 450 281 1756 205 6 16 chrX 10295879 10296245 -152303685 - MLT1A1 LTR MaLR 0 365 4 997 199 14 5 chrX 10296290 10296506 -152303424 + MER58B DNA MER1_type 123 340 -1 238 281 53 18 chrX 10296572 10296686 -152303244 - MLT1J1 LTR MaLR -308 138 21 1986 155 0 3 chrX 10297857 10298161 -152301769 + AluJo SINE Alu 1 303 -9 380 169 13 0 chrX 10298161 10298238 -152301692 + GA-rich Low_complexity Low_complexity 1 78 0 1815 189 0 7 chrX 10298976 10299278 -152300652 - AluJo SINE Alu -12 300 1 745 198 0 0 chrX 10299295 10299421 -152300509 - FLAM_C SINE Alu -17 126 1 1629 183 53 17 chrX 10300034 10300334 -152299596 - AluJo SINE Alu 0 312 2 306 0 0 0 chrX 10300336 10300370 -152299560 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 321 231 0 51 chrX 10300843 10300921 -152299009 + MER58B DNA MER1_type 268 341 0 713 286 65 14 chrX 10301047 10301400 -152298530 + MER115 DNA AcHobo 323 693 0 189 0 0 0 chrX 10301752 10301773 -152298157 + (T)n Simple_repeat Simple_repeat 1 21 0 1632 203 19 63 chrX 10301808 10302222 -152297708 + MSTD LTR MaLR 1 396 0 1330 161 5 27 chrX 10303328 10303552 -152296378 - MER20 DNA MER1_type 0 219 1 818 163 0 22 chrX 10303790 10303925 -152296005 - FLAM_C SINE Alu 0 133 2 342 349 18 0 chrX 10304061 10304170 -152295760 - MIR SINE MIR -69 139 29 329 259 52 30 chrX 10304849 10304984 -152294946 - L1ME4a LINE L1 -35 6086 5949 2400 95 0 0 chrX 10304996 10305301 -152294629 + AluSx SINE Alu 1 305 -7 243 0 0 0 chrX 10306262 10306289 -152293641 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 447 35 0 0 chrX 10306288 10306345 -152293585 + (TG)n Simple_repeat Simple_repeat 2 58 0 370 298 48 52 chrX 10307687 10307959 -152291971 + LTR16A1 LTR ERVL 187 457 0 569 318 70 4 chrX 10308036 10308278 -152291652 + MIR SINE MIR 4 261 -1 306 268 65 29 chrX 10308333 10308471 -152291459 - MIR SINE MIR -81 181 39 303 352 213 0 chrX 10310303 10310627 -152289303 - L2 LINE L2 -640 2674 2282 193 302 48 0 chrX 10311405 10311468 -152288462 - L2 LINE L2 -1034 2280 2215 222 311 138 16 chrX 10313841 10313972 -152285958 + MIR SINE MIR 9 141 -67 215 328 99 6 chrX 10314047 10314218 -152285712 + L2 LINE L2 1480 1666 -1648 2035 183 7 27 chrX 10314418 10314822 -152285108 + MSTD LTR MaLR 1 396 0 24 32 0 0 chrX 10314886 10314917 -152285013 + AT_rich Low_complexity Low_complexity 1 31 0 2110 104 35 0 chrX 10314918 10315256 -152284674 - L1MA4 LINE L1 -6 6294 5945 462 279 80 34 chrX 10315291 10315528 -152284402 - MLT1J2 LTR MaLR -35 415 168 1458 202 18 21 chrX 10315532 10315869 -152284061 + MLT1C LTR MaLR 132 467 0 545 275 12 12 chrX 10315870 10316037 -152283893 - MLT1J2 LTR MaLR -282 168 2 190 326 116 0 chrX 10316133 10316219 -152283711 - MIR SINE MIR -38 224 129 569 352 134 30 chrX 10316260 10317375 -152282555 + L2 LINE L2 2033 3267 -5 249 174 70 58 chrX 10317909 10317995 -152281935 - L1MC5 LINE L1 -44 7917 7831 23 33 0 0 chrX 10318117 10318147 -152281783 + AT_rich Low_complexity Low_complexity 1 30 0 813 249 11 0 chrX 10318308 10318489 -152281441 + MER58A DNA MER1_type 1 183 -41 35 0 0 0 chrX 10318489 10318524 -152281406 + AT_rich Low_complexity Low_complexity 1 35 0 716 151 42 17 chrX 10318532 10318651 -152281279 - FLAM_C SINE Alu -11 122 1 554 322 18 0 chrX 10318696 10318867 -152281063 + MIR SINE MIR 70 243 -19 208 294 119 8 chrX 10318931 10319057 -152280873 + MIR SINE MIR 49 188 -74 1262 274 98 19 chrX 10319359 10319435 -152280495 - L2 LINE L2 -290 3023 2954 495 259 0 17 chrX 10319435 10319551 -152280379 - MER81 DNA DNA 0 114 1 1262 274 98 19 chrX 10319551 10319975 -152279955 - L2 LINE L2 -359 2954 2485 1336 171 171 23 chrX 10319975 10320320 -152279610 - MSTD LTR MaLR 0 396 1 337 308 0 0 chrX 10320322 10320413 -152279517 - L2 LINE L2 -829 2485 2395 294 246 140 35 chrX 10320537 10320651 -152279279 - L2 LINE L2 -937 2377 2252 768 229 41 0 chrX 10321340 10321510 -152278420 - MER5B DNA MER1_type -1 177 1 2586 35 0 16 chrX 10322086 10322401 -152277529 + AluY SINE Alu 1 310 -1 261 252 78 35 chrX 10322478 10322593 -152277337 - MLT1H LTR MaLR 0 549 430 480 275 26 54 chrX 10322691 10322901 -152277029 - MLT1H LTR MaLR -302 247 1 1420 160 254 32 chrX 10323090 10323428 -152276502 - MER47B DNA MER2_type 0 418 6 21 0 0 0 chrX 10323610 10323631 -152276299 + AT_rich Low_complexity Low_complexity 1 21 0 825 279 95 23 chrX 10324195 10324542 -152275388 - MLT1J2 LTR MaLR -40 410 39 208 291 55 63 chrX 10325526 10325653 -152274277 + MIR3 SINE MIR 78 203 -5 773 157 0 132 chrX 10325823 10326058 -152273872 + MER20 DNA MER1_type 16 219 0 229 162 0 59 chrX 10326820 10326888 -152273042 + L1MC4 LINE L1 6640 6703 -1339 697 211 23 12 chrX 10327041 10327212 -152272718 + L1MD3 LINE L1 7794 7966 -29 568 190 52 95 chrX 10327461 10327693 -152272237 - L1ME3A LINE L1 -22 6148 5927 432 293 159 0 chrX 10328039 10328196 -152271734 - MER5A DNA MER1_type -7 182 1 1008 183 142 0 chrX 10328220 10328439 -152271491 + MIR SINE MIR 2 251 -11 27 0 0 0 chrX 10328968 10328995 -152270935 + AT_rich Low_complexity Low_complexity 1 27 0 254 286 91 38 chrX 10379015 10379225 -152220705 - L2 LINE L2 -954 2360 2140 701 150 8 0 chrX 10380709 10380842 -152219088 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 257 239 22 22 chrX 10381938 10382072 -152217858 + GA-rich Low_complexity Low_complexity 3 136 0 23 33 0 0 chrX 10382520 10382550 -152217380 + AT_rich Low_complexity Low_complexity 1 30 0 201 261 108 63 chrX 10383256 10383367 -152216563 + MIR SINE MIR 2 117 -145 291 299 204 34 chrX 10384599 10384746 -152215184 + MIR SINE MIR 14 185 -77 708 249 12 25 chrX 10384746 10384998 -152214932 - LTR16C LTR ERVL 0 491 202 316 224 93 107 chrX 10386317 10386522 -152213408 + MLT1J LTR MaLR 224 425 -86 * 1579 228 102 7 chrX 10386518 10386970 -152212960 + HsTC2 DNA Tc2 19 513 -1385 1011 177 39 99 chrX 10386967 10387300 -152212630 + HsTC2 DNA Tc2 1269 1757 -141 * 297 209 309 0 chrX 10388855 10388965 -152210965 - MER20 DNA MER1_type -75 144 1 252 267 47 58 chrX 10389629 10389715 -152210215 - MER5B DNA MER1_type -36 142 58 21 0 0 0 chrX 10389808 10389829 -152210101 + AT_rich Low_complexity Low_complexity 1 21 0 231 97 0 0 chrX 10389854 10389885 -152210045 + LTR47A LTR ERVL 1 31 -421 1607 136 101 0 chrX 10389933 10390219 -152209711 + LTR47A LTR ERVL 130 444 -8 930 265 9 9 chrX 10390304 10390523 -152209407 + MER58A DNA MER1_type 2 220 -4 662 332 21 17 chrX 10390573 10390811 -152209119 - MIR SINE MIR -3 259 21 2390 176 73 13 chrX 10390901 10391377 -152208553 + MLT1D LTR MaLR 1 505 0 1088 169 9 65 chrX 10391938 10392169 -152207761 - MER20 DNA MER1_type 0 219 2 990 89 0 0 chrX 10392657 10392792 -152207138 + L1MA2 LINE L1 6170 6304 0 781 219 13 0 chrX 10393010 10393161 -152206769 - MER5B DNA MER1_type 0 178 26 845 263 13 18 chrX 10393167 10393391 -152206539 + MER58A DNA MER1_type 1 223 -1 332 303 93 18 chrX 10393632 10393965 -152205965 + L1MC5 LINE L1 7325 7682 -279 988 284 139 60 chrX 10394494 10395172 -152204758 - L2 LINE L2 -8 3305 2551 1408 152 32 127 chrX 10395172 10395573 -152204357 - MLT1A1 LTR MaLR -2 363 1 988 284 139 60 chrX 10395573 10395743 -152204187 - L2 LINE L2 -762 2551 2396 317 281 230 7 chrX 10395771 10395910 -152204020 + L2 LINE L2 2896 3065 -248 300 232 9 18 chrX 10396808 10396920 -152203010 + GA-rich Low_complexity Low_complexity 3 113 0 259 281 16 0 chrX 10397007 10397071 -152202859 + L2 LINE L2 2928 2992 -321 2703 122 18 23 chrX 10398330 10398765 -152201165 + Tigger2a DNA MER2_type 2 434 0 286 353 15 29 chrX 10398893 10399029 -152200901 - L2 LINE L2 -32 3240 3107 362 269 0 13 chrX 10400256 10400334 -152199596 - L2 LINE L2 -45 3268 3192 21 0 0 0 chrX 10400900 10400921 -152199009 + AT_rich Low_complexity Low_complexity 1 21 0 201 156 0 0 chrX 10401480 10401512 -152198418 + (TATG)n Simple_repeat Simple_repeat 2 33 0 474 261 90 23 chrX 10401514 10401824 -152198106 + L1ME4a LINE L1 5585 5915 -206 216 173 13 40 chrX 10403481 10403556 -152196374 + GA-rich Low_complexity Low_complexity 4 76 0 201 194 0 0 chrX 10403908 10403944 -152195986 + L3 LINE CR1 1540 1575 -2 346 113 0 0 chrX 10404910 10404963 -152194967 - MER53 DNA DNA -1 188 136 549 122 0 0 chrX 10405178 10405268 -152194662 - AluSp/q SINE Alu 0 313 224 23 0 0 0 chrX 10405316 10405339 -152194591 + AT_rich Low_complexity Low_complexity 1 23 0 2490 84 0 3 chrX 10405811 10406122 -152193808 - AluSg SINE Alu 0 310 1 200 371 67 0 chrX 10406580 10406669 -152193261 + L2 LINE L2 1394 1488 -1826 1284 206 35 14 chrX 10406747 10407091 -152192839 + Charlie1 DNA MER1_type 2411 2761 0 712 290 178 55 chrX 10407099 10407913 -152192017 + L2 LINE L2 1830 2743 -571 1942 155 0 13 chrX 10408940 10409250 -152190680 + AluJo SINE Alu 1 306 -6 239 293 13 93 chrX 10409912 10410062 -152189868 + MIR SINE MIR 119 256 -6 403 101 0 76 chrX 10410634 10410742 -152189188 + AluSg/x SINE Alu 217 310 0 220 229 0 0 chrX 10411409 10411457 -152188473 + A-rich Low_complexity Low_complexity 1 48 0 314 219 238 9 chrX 10411968 10412073 -152187857 - MER5A DNA MER1_type 0 189 61 1050 166 52 14 chrX 10413022 10413233 -152186697 + MER20 DNA MER1_type 1 219 0 709 239 78 29 chrX 10414362 10414567 -152185363 + MIR SINE MIR 48 262 0 718 303 110 42 chrX 10415084 10415362 -152184568 - HAL1 LINE L1 0 2507 2249 2239 48 0 7 chrX 10415362 10415635 -152184295 - AluY SINE Alu 0 311 41 718 303 110 42 chrX 10415635 10416139 -152183791 - HAL1 LINE L1 -258 2249 1672 610 261 18 125 chrX 10416134 10416678 -152183252 - HAL1 LINE L1 -1496 1011 526 * 1088 191 77 111 chrX 10417189 10417567 -152182363 + MLT1A1 LTR MaLR 1 365 0 300 301 82 27 chrX 10417864 10418010 -152181920 + L2 LINE L2 3160 3313 0 289 354 63 8 chrX 10418554 10418681 -152181249 - L2 LINE L2 0 3272 3139 207 250 0 0 chrX 10418881 10418921 -152181009 - L2 LINE L2 -15 3257 3218 574 295 51 30 chrX 10419527 10419761 -152180169 + L2 LINE L2 2902 3140 -173 1514 283 38 17 chrX 10419771 10420241 -152179689 - MLT1E LTR MaLR 0 593 114 816 128 0 0 chrX 10420246 10420355 -152179575 - FLAM_C SINE Alu -24 119 11 205 354 34 72 chrX 10421266 10421529 -152178401 - L2 LINE L2 -182 3090 2838 256 271 25 17 chrX 10421990 10422108 -152177822 - MLT1L LTR MaLR -350 265 147 486 310 62 48 chrX 10422323 10422727 -152177203 - L1M4 LINE L1 -1444 4702 4292 229 276 15 45 chrX 10422941 10423075 -152176855 - L1M4 LINE L1 -2107 4039 3910 495 305 147 29 chrX 10423083 10423471 -152176459 - L1M4 LINE L1 -2407 3739 3288 2054 134 3 0 chrX 10423471 10423769 -152176161 - AluSx SINE Alu -13 299 1 495 305 147 29 chrX 10423769 10423836 -152176094 - L1M4 LINE L1 -2858 3288 3230 24 32 0 0 chrX 10424079 10424110 -152175820 + AT_rich Low_complexity Low_complexity 1 31 0 488 164 107 0 chrX 10424182 10424304 -152175626 - L1MA4 LINE L1 0 6300 6166 201 39 0 0 chrX 10424796 10424822 -152175108 + (CA)n Simple_repeat Simple_repeat 2 27 0 214 194 28 0 chrX 10424859 10424931 -152174999 + CT-rich Low_complexity Low_complexity 2 75 0 244 217 43 29 chrX 10425077 10425146 -152174784 - HAL1b LINE L1 -864 484 415 190 259 185 44 chrX 10425957 10426092 -152173838 - MIR SINE MIR -70 192 39 219 322 0 0 chrX 10426100 10426159 -152173771 + L2 LINE L2 3250 3308 -5 251 241 52 0 chrX 10426315 10426373 -152173557 - MIR SINE MIR -89 173 113 1839 246 32 14 chrX 10426378 10426882 -152173048 + LTR40a LTR ERVL 6 518 -1 202 337 79 11 chrX 10426893 10426982 -152172948 - MIR SINE MIR -167 95 1 246 332 73 41 chrX 10427402 10427558 -152172372 + MIR SINE MIR 21 184 -65 765 191 56 0 chrX 10427569 10427747 -152172183 + MER53 DNA DNA 2 189 0 357 288 37 85 chrX 10427769 10428051 -152171879 - LTR16A1 LTR ERVL -23 468 185 596 188 8 0 chrX 10429514 10429631 -152170299 - MER94 DNA DNA -1 133 16 3559 194 11 7 chrX 10429970 10430719 -152169211 + L1MB7 LINE L1 5417 6168 -16 771 231 87 28 chrX 10430738 10431024 -152168906 - MER33 DNA MER1_type -18 306 4 2197 141 60 29 chrX 10432012 10432394 -152167536 - MSTD LTR MaLR -2 394 1 711 219 144 0 chrX 10432624 10432784 -152167146 + MER5A DNA MER1_type 1 183 -6 553 258 71 54 chrX 10432939 10433179 -152166751 - MIR SINE MIR 0 262 19 469 277 67 25 chrX 10433601 10433839 -152166091 + MER112 DNA MER1_type 1 248 -12 1653 151 42 33 chrX 10433956 10434287 -152165643 + THE1B LTR MaLR 31 364 0 960 226 18 18 chrX 10434660 10434877 -152165053 - MER20 DNA MER1_type 0 219 3 24 0 0 0 chrX 10435751 10435775 -152164155 + AT_rich Low_complexity Low_complexity 1 24 0 262 313 20 61 chrX 10436709 10436856 -152163074 + MIR SINE MIR 72 212 -50 1716 184 0 3 chrX 10437170 10437476 -152162454 + AluJb SINE Alu 1 305 0 272 303 88 72 chrX 10437735 10438190 -152161740 - MLT1J LTR MaLR -49 462 1 183 156 0 0 chrX 10438328 10438360 -152161570 + A-rich Low_complexity Low_complexity 1 32 0 566 277 142 35 chrX 10438393 10438685 -152161245 + L2 LINE L2 2744 3056 -257 300 91 0 0 chrX 10439185 10439229 -152160701 + (TG)n Simple_repeat Simple_repeat 1 44 0 271 203 68 0 chrX 10442491 10442565 -152157365 + L1MD3 LINE L1 7796 7874 -121 337 178 44 11 chrX 10442570 10442660 -152157270 + L1MD2 LINE L1 6265 6357 -2 1609 101 5 0 chrX 10443350 10443558 -152156372 - AluSp SINE Alu -104 209 1 255 271 123 25 chrX 10443559 10443681 -152156249 + MIR SINE MIR 123 256 -6 292 188 12 12 chrX 10443699 10443779 -152156151 + CT-rich Low_complexity Low_complexity 4 83 0 370 208 189 19 chrX 10443843 10443949 -152155981 - MER63 DNA MER1_type -86 750 1 638 231 55 28 chrX 10444900 10445082 -152154848 - MIR SINE MIR -22 240 54 1683 245 96 21 chrX 10445325 10445848 -152154082 + MER68 LTR ERV1 1 562 0 253 288 184 0 chrX 10445869 10445994 -152153936 - MLT1H LTR MaLR -4 545 398 402 203 203 15 chrX 10446074 10446207 -152153723 - MLT1H LTR MaLR -296 253 96 182 36 0 36 chrX 10446385 10446413 -152153517 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2821 234 66 5 chrX 10446779 10448024 -152151906 - L1ME1 LINE L1 -6 6160 4841 351 293 43 9 chrX 10449131 10449247 -152150683 - MIR SINE MIR -140 122 3 333 263 35 26 chrX 10449383 10449497 -152150433 - MLT1I LTR MaLR -35 374 260 251 220 0 0 chrX 10449570 10449629 -152150301 - MLT1I LTR MaLR -266 143 85 1937 142 3 3 chrX 10450171 10450459 -152149471 + AluJb SINE Alu 1 288 -24 197 33 33 0 chrX 10451143 10451173 -152148757 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 427 263 91 20 chrX 10451174 10451372 -152148558 - LTR16C LTR ERVL -24 467 256 * 948 217 54 5 chrX 10451360 10451563 -152148367 + MER58A DNA MER1_type 11 223 -1 199 325 78 0 chrX 10452620 10452697 -152147233 - L3 LINE CR1 -12 1565 1483 1998 134 10 13 chrX 10456701 10457014 -152142916 - AluSx SINE Alu 0 312 1 32376 37 4 2 chrX 10459998 10464933 -152134997 + L1PA4 LINE L1 1209 6155 0 1566 162 7 33 chrX 10465756 10466059 -152133871 + AluJo SINE Alu 1 295 -17 346 327 99 12 chrX 10466159 10466321 -152133609 + MIR SINE MIR 36 211 -51 983 145 6 0 chrX 10466808 10466980 -152132950 + (TA)n Simple_repeat Simple_repeat 1 173 0 1834 159 18 11 chrX 10466980 10467263 -152132667 - AluJb SINE Alu -27 285 1 207 146 0 0 chrX 10467780 10467821 -152132109 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 2098 132 69 65 chrX 10468921 10469123 -152130807 - Tigger2a DNA MER2_type -2274 434 234 2383 80 0 6 chrX 10469123 10469435 -152130495 + AluY SINE Alu 1 310 -1 2098 132 69 65 chrX 10469435 10469664 -152130266 - Tigger2a DNA MER2_type -2474 234 1 211 301 178 0 chrX 10469793 10469866 -152130064 - MIR3 SINE MIR -25 183 98 202 233 23 0 chrX 10469891 10469934 -152129996 - L2 LINE L2 -5 3308 3265 1293 200 29 6 chrX 10470071 10470386 -152129544 - MER33 DNA MER1_type -1 323 2 473 263 15 0 chrX 10470569 10470706 -152129224 - L2 LINE L2 -881 2433 2295 23 33 0 0 chrX 10471306 10471336 -152128594 + AT_rich Low_complexity Low_complexity 1 30 0 870 151 7 0 chrX 10472405 10472544 -152127386 - MER58B DNA MER1_type 0 341 202 1669 121 8 8 chrX 10473152 10473391 -152126539 + AluSg SINE Alu 59 297 -13 619 247 146 0 chrX 10473705 10473863 -152126067 + MER5A DNA MER1_type 9 189 0 241 194 0 75 chrX 10474943 10475010 -152124920 + GA-rich Low_complexity Low_complexity 3 64 0 484 326 14 0 chrX 10476236 10476349 -152123581 - MIR3 SINE MIR -18 190 73 957 215 51 9 chrX 10476349 10476563 -152123367 + MER58A DNA MER1_type 1 223 -1 484 326 14 0 chrX 10476563 10476596 -152123334 - MIR3 SINE MIR -135 73 42 203 226 147 20 chrX 10477401 10477503 -152122427 + L2 LINE L2 3199 3313 0 856 170 18 18 chrX 10477669 10477840 -152122090 - MSTD LTR MaLR -221 175 5 468 242 0 0 chrX 10477914 10478009 -152121921 + L2 LINE L2 3218 3312 -1 390 318 35 29 chrX 10478054 10478224 -152121706 - MIR SINE MIR -71 191 21 519 243 88 21 chrX 10478240 10478568 -152121362 - L1MC4a LINE L1 -1865 5943 5475 403 221 115 111 chrX 10478660 10478904 -152121026 - L1ME4a LINE L1 -6 6115 5871 266 300 56 11 chrX 10478995 10479085 -152120845 + MIR SINE MIR 157 250 -12 222 333 101 0 chrX 10479182 10479281 -152120649 - L2 LINE L2 0 3272 3164 327 296 136 8 chrX 10481063 10481195 -152118735 + MIR SINE MIR 5 153 -109 392 235 228 7 chrX 10481332 10481481 -152118449 - MIR SINE MIR -31 231 50 318 323 31 0 chrX 10481568 10481664 -152118266 - MIR SINE MIR -6 256 158 845 187 144 0 chrX 10481664 10481851 -152118079 - MER20 DNA MER1_type 0 219 6 431 243 22 20 chrX 10481868 10481997 -152117933 - MIR SINE MIR -66 142 20 408 247 170 46 chrX 10482747 10482941 -152116989 - MIR SINE MIR -11 251 34 862 175 34 34 chrX 10482944 10483121 -152116809 - MER5A DNA MER1_type 0 189 13 32 0 0 0 chrX 10483187 10483219 -152116711 + AT_rich Low_complexity Low_complexity 1 32 0 415 235 106 59 chrX 10483236 10483406 -152116524 - MER5B DNA MER1_type 0 178 1 199 277 0 0 chrX 10483470 10483517 -152116413 - MER5A DNA MER1_type -114 75 29 553 162 29 108 chrX 10483567 10483771 -152116159 - MER53 DNA DNA -1 188 1 320 242 30 20 chrX 10483846 10483945 -152115985 + MER5A DNA MER1_type 88 187 -2 233 50 0 50 chrX 10484523 10484563 -152115367 + (GGAAA)n Simple_repeat Simple_repeat 2 39 0 236 189 0 0 chrX 10486407 10486460 -152113470 + (TA)n Simple_repeat Simple_repeat 2 54 0 2890 162 5 43 chrX 10486830 10487454 -152112476 - L1MB4 LINE L1 -23 6157 5558 227 53 0 26 chrX 10487459 10487497 -152112433 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 573 204 219 0 chrX 10489485 10489622 -152110308 - MER5B DNA MER1_type -1 177 11 310 308 0 32 chrX 10489853 10490009 -152109921 + GA-rich Low_complexity Low_complexity 2 152 0 248 241 11 64 chrX 10490106 10490293 -152109637 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 390 259 19 9 chrX 10490301 10490409 -152109521 - MER94 DNA DNA -2 132 24 2336 102 3 0 chrX 10492909 10493213 -152106717 + AluSp SINE Alu 1 305 -8 3223 152 19 21 chrX 10493593 10493762 -152106168 - MER45B DNA AcHobo -543 1038 870 2293 101 0 0 chrX 10493762 10494050 -152105880 - AluSc SINE Alu -21 288 1 3223 152 19 21 chrX 10494050 10494499 -152105431 - MER45B DNA AcHobo -711 870 421 1172 175 0 44 chrX 10494731 10494960 -152104970 - MER58A DNA MER1_type -4 220 2 188 320 48 64 chrX 10495017 10495142 -152104788 - MIR SINE MIR -77 185 63 284 246 0 0 chrX 10495939 10496000 -152103930 + L2 LINE L2 3250 3310 -3 216 97 0 0 chrX 10496024 10496055 -152103875 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 2451 104 0 0 chrX 10496175 10496482 -152103448 + AluSg SINE Alu 1 307 -3 5138 84 6 4 chrX 10496495 10497208 -152102722 + L1PB1 LINE L1 5438 6151 0 403 308 25 13 chrX 10497381 10497540 -152102390 + MIR3 SINE MIR 8 168 -40 1660 130 18 0 chrX 10497645 10497929 -152102001 + L1MC3 LINE L1 7479 7767 -18 365 303 9 15 chrX 10497959 10498109 -152101821 + L1MB2 LINE L1 176 565 -5738 2076 236 38 39 chrX 10498536 10499442 -152100488 + L1MB2 LINE L1 778 1797 -4516 1397 153 16 4 chrX 10499460 10499708 -152100222 + Tigger1 DNA MER2_type 2079 2329 -89 24279 155 16 19 chrX 10499708 10505822 -152094108 - L1PA10 LINE L1 -34 6449 271 4359 185 49 9 chrX 10505834 10506288 -152093642 + L1MB2 LINE L1 3903 4337 -2070 198 0 0 0 chrX 10506288 10506310 -152093620 + (CA)n Simple_repeat Simple_repeat 1 22 0 4359 185 49 9 chrX 10506310 10507990 -152091940 + L1MB2 LINE L1 4337 6407 0 1560 175 125 0 chrX 10508378 10508681 -152091249 - MER58B DNA MER1_type 0 341 1 239 373 102 8 chrX 10509643 10509761 -152090169 - MER91A DNA MER1_type -47 149 21 2244 123 0 0 chrX 10510057 10510365 -152089565 - AluSx SINE Alu -4 308 1 529 305 52 14 chrX 10510974 10511144 -152088786 + MIR SINE MIR 2 183 -79 1692 139 133 52 chrX 10511144 10511335 -152088595 - LTR54B LTR ERV1 -1 497 323 1975 155 3 3 chrX 10511335 10511638 -152088292 + AluJo SINE Alu 2 304 -8 1692 139 133 52 chrX 10511638 10511906 -152088024 - LTR54B LTR ERV1 -175 323 1 529 305 52 14 chrX 10511906 10511945 -152087985 + MIR SINE MIR 183 219 -43 1549 119 0 25 chrX 10512303 10512539 -152087391 - MER30 DNA MER1_type 0 230 1 893 107 47 0 chrX 10512726 10512875 -152087055 + MER49 LTR ERV1 139 294 -629 848 97 48 23 chrX 10512861 10513052 -152086878 + MER4D LTR ERV1 62 365 -507 * 1888 174 69 16 chrX 10513059 10513491 -152086439 - L1M4 LINE L1 -475 5709 5255 830 96 7 66 chrX 10515215 10515351 -152084579 + FLAM_C SINE Alu 2 129 -4 192 363 73 51 chrX 10516268 10516623 -152083307 - L2 LINE L2 -525 2789 2427 343 209 18 0 chrX 10516717 10516827 -152083103 + (TGGA)n Simple_repeat Simple_repeat 2 113 0 419 250 230 7 chrX 10517353 10517501 -152082429 - MER5A DNA MER1_type 0 189 9 2002 208 91 65 chrX 10517602 10518569 -152081361 - L1MC5 LINE L1 -448 7513 6500 1625 152 7 45 chrX 10518757 10519026 -152080904 + AluJo SINE Alu 1 259 -53 843 157 5 65 chrX 10519126 10519311 -152080619 - Tigger2a DNA MER2_type -260 174 1 974 202 67 14 chrX 10519324 10519532 -152080398 + MER58A DNA MER1_type 3 221 -3 319 209 22 11 chrX 10519536 10519627 -152080303 - HAL1 LINE L1 -171 2336 2245 3363 140 132 6 chrX 10519659 10520287 -152079643 + MER39 LTR ERV1 1 707 0 21 36 0 0 chrX 10520861 10520889 -152079041 + AT_rich Low_complexity Low_complexity 1 28 0 45 34 0 0 chrX 10521596 10521655 -152078275 + AT_rich Low_complexity Low_complexity 1 59 0 2243 121 0 0 chrX 10521683 10521989 -152077941 - AluSx SINE Alu -6 306 1 591 299 105 41 chrX 10522461 10522527 -152077403 + L1ME LINE L1 4862 4922 -1242 2339 67 0 0 chrX 10522527 10522839 -152077091 + AluY SINE Alu 1 312 0 591 299 105 41 chrX 10522839 10523343 -152076587 + L1ME LINE L1 4922 5465 -699 484 261 67 28 chrX 10523512 10523795 -152076135 + HAL1 LINE L1 1032 1325 -1182 25 31 0 0 chrX 10525142 10525174 -152074756 + AT_rich Low_complexity Low_complexity 1 32 0 552 202 16 16 chrX 10525175 10525296 -152074634 - MER20 DNA MER1_type 0 219 99 865 223 132 70 chrX 10525296 10525843 -152074087 - MER34C LTR ERV1 -1 584 4 195 320 154 0 chrX 10526491 10526569 -152073361 + L2 LINE L2 3147 3236 -36 234 260 0 0 chrX 10529316 10529366 -152070564 - L2 LINE L2 0 3313 3264 2320 100 3 6 chrX 10529518 10529829 -152070101 - AluSg SINE Alu 0 310 1 1757 244 96 43 chrX 10530173 10530727 -152069203 - MLT1E LTR MaLR -4 589 7 1252 183 24 45 chrX 10531008 10531297 -152068633 - MLT1A1 LTR MaLR -80 285 3 943 181 0 0 chrX 10531594 10531738 -152068192 - FAM SINE Alu -22 163 20 222 359 70 0 chrX 10532467 10532595 -152067335 + MIR SINE MIR 58 194 -68 3060 111 99 32 chrX 10532946 10533406 -152066524 + LTR49 LTR ERV1 2 507 -88 1404 161 165 0 chrX 10533406 10533661 -152066269 + AluJb SINE Alu 1 297 -5 3060 111 99 32 chrX 10533661 10533757 -152066173 + LTR49 LTR ERV1 507 595 0 2480 199 102 7 chrX 10533813 10534410 -152065520 - MLT1E1 LTR MaLR 0 654 1 1004 171 40 11 chrX 10534437 10534612 -152065318 + FAM SINE Alu 1 44 -5 206 238 0 0 chrX 10535640 10535682 -152064248 + A-rich Low_complexity Low_complexity 4 45 0 479 253 79 75 chrX 10535806 10535848 -152064082 + MER112 DNA MER1_type 7 47 -213 1853 165 0 10 chrX 10535848 10536145 -152063785 + AluJb SINE Alu 1 294 -18 479 253 79 75 chrX 10536145 10536355 -152063575 + MER112 DNA MER1_type 47 260 0 297 0 0 0 chrX 10539389 10539422 -152060508 + (TA)n Simple_repeat Simple_repeat 2 34 0 314 258 32 16 chrX 10539500 10539624 -152060306 + L1MC4a LINE L1 5788 5913 -1895 358 128 0 26 chrX 10539624 10539702 -152060228 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1882 135 0 11 chrX 10539702 10539983 -152059947 - AluJb SINE Alu -34 278 1 916 216 59 24 chrX 10540520 10540775 -152059155 + L1MC4a LINE L1 6555 6818 -990 2485 213 89 33 chrX 10540792 10541695 -152058235 + L1MC5 LINE L1 6961 7913 -48 381 272 14 14 chrX 10541876 10542023 -152057907 + (TA)n Simple_repeat Simple_repeat 1 147 0 211 214 71 0 chrX 10542528 10542570 -152057360 + MIR SINE MIR 79 123 -139 502 258 52 31 chrX 10543466 10543660 -152056270 - MER58 DNA MER1_type -130 211 14 559 228 24 0 chrX 10543664 10543787 -152056143 + MIR SINE MIR 21 146 -116 22 35 0 0 chrX 10543846 10543875 -152056055 + AT_rich Low_complexity Low_complexity 1 29 0 910 150 56 19 chrX 10543961 10544121 -152055809 - FRAM SINE Alu 0 166 1 2095 127 10 3 chrX 10544849 10545149 -152054781 + AluSx SINE Alu 1 302 -10 1364 109 95 5 chrX 10545960 10546170 -152053760 + MER30 DNA MER1_type 1 229 -1 3978 28 4 0 chrX 10547084 10547556 -152052374 - L1PA5 LINE L1 -6 6148 5675 428 177 133 26 chrX 10547701 10547780 -152052150 - LTR40b LTR ERVL -7 455 359 321 26 0 0 chrX 10547780 10547818 -152052112 + (CA)n Simple_repeat Simple_repeat 2 39 0 428 177 133 26 chrX 10547818 10547851 -152052079 - LTR40b LTR ERVL -103 359 331 1716 188 19 40 chrX 10548449 10548821 -152051109 - MLT1A1 LTR MaLR 0 365 2 923 179 97 0 chrX 10549251 10549370 -152050560 + L1MD3 LINE L1 6760 6866 -1129 198 0 0 0 chrX 10549370 10549392 -152050538 + (GA)n Simple_repeat Simple_repeat 1 22 0 923 179 97 0 chrX 10549392 10549467 -152050463 + L1MD3 LINE L1 6866 6973 -1022 1160 83 0 6 chrX 10549475 10549632 -152050298 + AluSg/x SINE Alu 137 292 -20 607 109 44 36 chrX 10549638 10549775 -152050155 + L1MC3 LINE L1 6961 7098 -687 284 253 35 11 chrX 10549776 10549863 -152050067 + MLT1F1 LTR MaLR 37 125 -442 2899 171 19 12 chrX 10549863 10550449 -152049481 + L1MD3 LINE L1 7404 7993 -2 214 233 12 58 chrX 10553038 10553124 -152046806 + MIR SINE MIR 89 170 -92 297 0 0 0 chrX 10553912 10553945 -152045985 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1874 143 29 0 chrX 10553947 10554220 -152045710 - AluSg SINE Alu -29 281 1 509 150 20 30 chrX 10554274 10554374 -152045556 - Tigger7 DNA MER2_type 0 2587 2489 * 1229 220 11 8 chrX 10554372 10554636 -152045294 - Tigger7 DNA MER2_type -2220 267 3 878 278 27 5 chrX 10555311 10555534 -152044396 + MIR SINE MIR 29 256 -6 1967 60 0 0 chrX 10555537 10555788 -152044142 + L1PA13 LINE L1 5911 6161 -2 358 318 84 38 chrX 10559443 10559682 -152040248 + L1M4 LINE L1 4562 4811 -1335 1817 214 100 31 chrX 10559962 10560660 -152039270 + Charlie7 DNA MER1_type 1852 2597 -15 407 277 13 32 chrX 10561887 10562042 -152037888 + LTR33 LTR ERVL 63 214 -307 272 299 19 0 chrX 10562025 10562132 -152037798 + LTR33 LTR ERVL 327 435 -86 * 441 278 233 29 chrX 10564360 10564734 -152035196 + L2 LINE L2 2526 2975 -339 273 313 0 50 chrX 10565010 10565109 -152034821 + MIR SINE MIR 167 260 -2 810 207 23 6 chrX 10565324 10565498 -152034432 - MER5B DNA MER1_type -1 177 1 282 206 0 0 chrX 10565717 10565780 -152034150 + CT-rich Low_complexity Low_complexity 2 64 0 418 190 93 0 chrX 10566427 10566536 -152033394 + MER45A DNA AcHobo 58 176 -2 248 285 126 53 chrX 10566592 10566743 -152033187 + MIR SINE MIR 83 244 -18 189 317 58 39 chrX 10567192 10567296 -152032634 + MIR SINE MIR 37 142 -66 1063 276 35 57 chrX 10567692 10567854 -152032076 - L2 LINE L2 0 3313 3149 2613 129 14 36 chrX 10567854 10568296 -152031634 - Tigger2a DNA MER2_type -2 432 1 1063 276 35 57 chrX 10568296 10568535 -152031395 - L2 LINE L2 -164 3149 2921 2134 121 3 3 chrX 10569630 10569927 -152030003 + AluSx SINE Alu 1 297 -15 24 0 0 0 chrX 10570345 10570369 -152029561 + AT_rich Low_complexity Low_complexity 1 24 0 586 282 99 63 chrX 10570483 10570735 -152029195 + MIR SINE MIR 2 262 0 300 267 0 33 chrX 10571048 10571138 -152028792 - L1ME4a LINE L1 -38 6083 5997 281 245 41 10 chrX 10571176 10571274 -152028656 + (CATATA)n Simple_repeat Simple_repeat 5 105 0 217 303 26 13 chrX 10572615 10572691 -152027239 + MIR SINE MIR 180 256 -6 1231 166 5 10 chrX 10572728 10572860 -152027070 + AluJo SINE Alu 1 134 -178 2355 60 0 0 chrX 10572860 10573173 -152026757 + AluY SINE Alu 1 313 0 1231 166 5 10 chrX 10573173 10573244 -152026686 + AluJo SINE Alu 134 204 -108 634 134 0 18 chrX 10573249 10573361 -152026569 - 7SK RNA RNA -83 110 1 353 276 15 52 chrX 10573363 10573497 -152026433 + MER90 LTR ERV1 486 614 0 314 220 49 4 chrX 10573560 10573690 -152026240 + MER5A DNA MER1_type 11 189 0 515 225 9 18 chrX 10573711 10573822 -152026108 - MER5B DNA MER1_type -35 143 34 1842 175 39 11 chrX 10574510 10574865 -152025065 + MLT1A1 LTR MaLR 1 365 0 1006 216 88 37 chrX 10575560 10575833 -152024097 + MER58B DNA MER1_type 2 288 -53 1844 169 77 12 chrX 10576201 10576524 -152023406 + Charlie1b DNA MER1_type 1 358 -2403 2203 122 10 0 chrX 10576524 10576828 -152023102 - AluSx SINE Alu -5 307 1 1844 169 77 12 chrX 10576828 10576918 -152023012 + Charlie1b DNA MER1_type 358 441 -82 1947 151 3 35 chrX 10577018 10577336 -152022594 - AluJb SINE Alu -4 308 1 2050 188 81 43 chrX 10578064 10578547 -152021383 + MLT1D LTR MaLR 5 505 0 292 265 143 10 chrX 10579545 10579643 -152020287 + L2 LINE L2 3150 3260 -12 1641 205 25 11 chrX 10580391 10580757 -152019173 - MLT1A2 LTR MaLR -3 371 1 277 234 11 53 chrX 10581220 10581265 -152018665 + (TATATG)n Simple_repeat Simple_repeat 6 46 -49 441 251 75 48 chrX 10581265 10581492 -152018438 - MER106A DNA MER1_type -3 233 1 277 234 11 53 chrX 10581492 10581540 -152018390 + (TATATG)n Simple_repeat Simple_repeat 46 95 0 2096 243 53 21 chrX 10582642 10583023 -152016907 + L1ME LINE L1 4 418 -5652 3820 152 52 12 chrX 10583023 10583701 -152016229 - MER44D DNA MER2_type 0 705 1 2096 243 53 21 chrX 10583701 10583993 -152015937 + L1ME LINE L1 418 699 -5371 350 205 128 0 chrX 10584007 10584124 -152015806 + L1ME LINE L1 757 888 -5182 1420 236 74 7 chrX 10584298 10584784 -152015146 + L2 LINE L2 2789 3310 -3 1605 124 18 0 chrX 10584934 10585160 -152014770 - AluSq SINE Alu -83 230 1 2299 92 3 0 chrX 10585170 10585462 -152014468 - AluSg SINE Alu -17 293 1 702 170 121 22 chrX 10585632 10585814 -152014116 + MER33 DNA MER1_type 1 192 -91 2372 90 0 0 chrX 10586919 10587218 -152012712 - AluSg SINE Alu -11 299 1 3321 150 54 9 chrX 10587227 10587589 -152012341 - L1MB5 LINE L1 0 6174 5775 270 0 0 0 chrX 10587589 10587619 -152012311 + (TG)n Simple_repeat Simple_repeat 2 31 0 3321 150 54 9 chrX 10587619 10587828 -152012102 - L1MB5 LINE L1 -399 5775 5577 2012 117 3 10 chrX 10587930 10588221 -152011709 - AluSx SINE Alu -10 302 14 557 224 101 36 chrX 10590209 10590428 -152009502 + L1MC4 LINE L1 7176 7408 -634 28 0 0 0 chrX 10590690 10590718 -152009212 + AT_rich Low_complexity Low_complexity 1 28 0 199 330 130 20 chrX 10591602 10591702 -152008228 - L2 LINE L2 0 3272 3162 2154 261 104 15 chrX 10592660 10593342 -152006588 + L1M3a LINE L1 349 1091 -5212 1043 300 126 20 chrX 10593345 10594080 -152005850 + L1M3a LINE L1 530 1162 -5141 2728 215 42 120 chrX 10594124 10594244 -152005686 + L1M3a LINE L1 1029 1157 -5225 1921 156 0 28 chrX 10594244 10594565 -152005365 + AluSx SINE Alu 1 312 0 2728 215 42 120 chrX 10594565 10594845 -152005085 + L1M3a LINE L1 1157 1457 -4925 1731 182 30 3 chrX 10594845 10595147 -152004783 + AluJb SINE Alu 1 310 -2 2728 215 42 120 chrX 10595147 10595221 -152004709 + L1M3a LINE L1 1457 1535 -4847 1048 106 12 6 chrX 10595221 10595391 -152004539 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 2728 215 42 120 chrX 10595391 10596019 -152003911 + L1M3a LINE L1 1535 1674 -4708 797 192 0 0 chrX 10596019 10596144 -152003786 + FLAM_A SINE Alu 1 125 -8 2728 215 42 120 chrX 10596144 10596778 -152003152 + L1M3a LINE L1 1674 2356 -4026 381 176 0 47 chrX 10596820 10596905 -152003025 + L1 LINE L1 1669 1749 -4564 * 1211 162 8 32 chrX 10596887 10597140 -152002790 + L1 LINE L1 5331 5577 -773 6030 151 13 10 chrX 10597248 10598345 -152001585 + L1MA4 LINE L1 5197 6296 -4 843 264 0 46 chrX 10598340 10598450 -152001480 + L1M1 LINE L1 2558 2671 -4894 * 2051 125 14 10 chrX 10598450 10598746 -152001184 + AluJo SINE Alu 1 297 -15 843 264 0 46 chrX 10598746 10598919 -152001011 + L1M1 LINE L1 2671 2828 -4737 2292 96 14 0 chrX 10599400 10599693 -152000237 + AluSx SINE Alu 1 297 -15 2179 144 42 31 chrX 10601217 10601577 -151998353 - THE1B LTR MaLR 0 364 1 578 312 60 14 chrX 10601821 10602039 -151997891 + MIR SINE MIR 35 262 0 327 294 39 0 chrX 10602058 10602203 -151997727 + MIR SINE MIR 62 212 -50 1049 202 17 56 chrX 10602612 10602845 -151997085 - MER58A DNA MER1_type 0 224 1 562 306 117 37 chrX 10603229 10603638 -151996292 - MLT1J2 LTR MaLR -8 442 1 1244 88 0 33 chrX 10603815 10603997 -151995933 - L1PA7 LINE L1 -14 6140 5965 296 258 62 10 chrX 10604790 10604887 -151995043 - MER20B DNA MER1_type -606 177 76 194 301 54 21 chrX 10605587 10605680 -151994250 - MIR SINE MIR -159 103 8 2532 81 0 0 chrX 10606871 10607180 -151992750 - AluSx SINE Alu -3 309 1 1205 316 33 24 chrX 10607239 10607818 -151992112 - MLT1K LTR MaLR -3 585 2 702 166 66 91 chrX 10607894 10608135 -151991795 - L1MC5 LINE L1 -74 7887 7653 41762 57 15 2 chrX 10608240 10611973 -151987957 - L1P2 LINE L1 -584 5571 1741 2499 64 0 0 chrX 10611973 10612268 -151987662 + AluSp SINE Alu 1 295 -18 41762 57 15 2 chrX 10612268 10614022 -151985908 - L1P2 LINE L1 -4414 1741 11 1715 146 8 0 chrX 10614195 10614463 -151985467 + AluJb SINE Alu 40 309 -3 21 0 0 0 chrX 10614810 10614831 -151985099 + AT_rich Low_complexity Low_complexity 1 21 0 1754 120 4 29 chrX 10614965 10615240 -151984690 + AluSx SINE Alu 38 305 -7 304 202 228 35 chrX 10615240 10615354 -151984576 - MER3 DNA MER1_type -73 136 1 480 250 122 53 chrX 10615576 10615764 -151984166 + MIR3 SINE MIR 2 202 -6 180 353 168 37 chrX 10617300 10617490 -151982440 + MIR SINE MIR 33 247 -15 3544 145 25 58 chrX 10617598 10617779 -151982151 - L1MA7 LINE L1 0 6291 6106 2147 114 3 3 chrX 10617779 10618077 -151981853 - AluSx SINE Alu -14 298 1 3544 145 25 58 chrX 10618077 10618417 -151981513 - L1MA7 LINE L1 -185 6106 5756 297 0 0 0 chrX 10618417 10618450 -151981480 + (TA)n Simple_repeat Simple_repeat 1 33 0 3544 145 25 58 chrX 10618450 10618634 -151981296 - L1MA7 LINE L1 -535 5756 5607 2424 87 7 7 chrX 10618634 10618944 -151980986 - AluSg SINE Alu 0 310 1 3544 145 25 58 chrX 10618944 10618965 -151980965 - L1MA7 LINE L1 -684 5607 5587 952 211 14 19 chrX 10619005 10619214 -151980716 - L1ME3 LINE L1 -1 6161 5954 1758 184 0 7 chrX 10622736 10623035 -151976895 - AluJb SINE Alu -15 297 1 602 299 45 0 chrX 10623241 10623395 -151976535 + MIR3 SINE MIR 37 197 -11 301 329 50 50 chrX 10623580 10623720 -151976210 - L2 LINE L2 0 3272 3133 895 167 45 81 chrX 10623769 10623991 -151975939 - MER20 DNA MER1_type 0 219 6 555 298 63 21 chrX 10624316 10624554 -151975376 - L2 LINE L2 -3 3310 3063 1208 0 21 0 chrX 10624689 10624831 -151975099 + (CTATG)n Simple_repeat Simple_repeat 3 147 0 378 0 0 0 chrX 10627619 10627661 -151972269 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 65 0 0 chrX 10627672 10627718 -151972212 + AT_rich Low_complexity Low_complexity 1 46 0 189 154 0 0 chrX 10630618 10630657 -151969273 + (TG)n Simple_repeat Simple_repeat 2 40 0 234 322 26 26 chrX 10631171 10631286 -151968644 - L2 LINE L2 0 3272 3158 1103 195 96 54 chrX 10631550 10632091 -151967839 + MLT1E3 LTR MaLR 1 622 -2 233 345 46 0 chrX 10632326 10632413 -151967517 - L2 LINE L2 -41 3231 3141 653 200 18 24 chrX 10632668 10632833 -151967097 + MER96B DNA MER1_type? 244 407 -10 651 241 37 6 chrX 10634846 10635008 -151964922 - MER5B DNA MER1_type -5 173 7 376 203 76 0 chrX 10635273 10635352 -151964578 - MER53 DNA DNA 0 189 105 372 229 72 0 chrX 10635285 10635368 -151964562 + MER53 DNA DNA 23 111 -78 * 256 116 23 0 chrX 10635367 10635410 -151964520 + MER53 DNA DNA 68 111 -78 * 623 124 22 66 chrX 10635407 10635544 -151964386 - MER53 DNA DNA -58 131 1 219 303 66 0 chrX 10635577 10635653 -151964277 - MIR SINE MIR -11 251 171 908 144 0 0 chrX 10636983 10637115 -151962815 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 10637360 10637395 -151962535 + AT_rich Low_complexity Low_complexity 1 35 0 273 365 18 41 chrX 10637502 10637721 -151962209 + L2 LINE L2 2857 3070 -202 43 35 0 0 chrX 10638069 10638126 -151961804 + AT_rich Low_complexity Low_complexity 1 57 0 2198 128 0 0 chrX 10638401 10638707 -151961223 - AluSx SINE Alu -6 306 1 223 175 235 0 chrX 10639099 10639188 -151960742 - MIR SINE MIR -78 130 1 203 297 45 90 chrX 10639554 10639820 -151960110 + L2 LINE L2 2462 2715 -599 197 373 45 0 chrX 10640581 10640691 -151959239 + L2 LINE L2 3141 3255 -17 233 345 42 47 chrX 10640742 10640933 -151958997 + L2 LINE L2 2568 2757 -557 198 315 45 84 chrX 10641067 10641245 -151958685 + L2 LINE L2 2933 3103 -169 182 250 313 0 chrX 10641329 10641393 -151958537 + L2 LINE L2 3189 3272 0 218 366 52 0 chrX 10641955 10642089 -151957841 - MIR3 SINE MIR -61 147 7 2008 205 12 2 chrX 10642708 10643112 -151956818 + MER74A LTR ERVL 121 528 -30 7974 38 1 0 chrX 10644054 10645097 -151954833 + L1PA5 LINE L1 5111 6154 0 21 36 0 0 chrX 10645097 10645125 -151954805 + AT_rich Low_complexity Low_complexity 1 28 0 896 199 187 19 chrX 10645306 10645608 -151954322 + MLT1C LTR MaLR 133 461 -6 2346 109 0 6 chrX 10647536 10647848 -151952082 + AluSg SINE Alu 1 310 0 2033 206 74 0 chrX 10649109 10649555 -151950375 + L1MB8 LINE L1 5699 6177 -1 519 227 62 8 chrX 10649877 10650005 -151949925 + MIR SINE MIR 128 262 0 465 214 0 0 chrX 10650445 10650534 -151949396 + MER3 DNA MER1_type 1 89 -120 499 152 22 0 chrX 10650618 10650710 -151949220 - L1MB7 LINE L1 0 6184 6091 970 166 44 6 chrX 10650711 10650892 -151949038 - MLT1A1 LTR MaLR -173 192 5 2985 137 126 9 chrX 10650990 10651523 -151948407 + LTR49 LTR ERV1 1 595 0 2004 131 3 17 chrX 10651824 10652121 -151947809 + AluJb SINE Alu 1 293 -19 407 315 61 30 chrX 10653265 10653462 -151946468 + MIR SINE MIR 60 262 0 792 213 11 44 chrX 10653608 10653791 -151946139 - MER69A DNA AcHobo 0 177 1 309 224 24 35 chrX 10654659 10654744 -151945186 + L1ME3A LINE L1 5415 5498 -676 2535 244 37 18 chrX 10655124 10655801 -151944129 + L1ME3A LINE L1 5476 6165 -5 2304 88 7 0 chrX 10656116 10656410 -151943520 - AluSc SINE Alu -13 296 1 23 0 0 0 chrX 10657151 10657174 -151942756 + AT_rich Low_complexity Low_complexity 1 23 0 526 264 140 63 chrX 10657417 10657830 -151942100 - HAL1b LINE L1 -428 920 476 180 0 0 0 chrX 10658694 10658714 -151941216 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chrX 10659537 10659558 -151940372 + AT_rich Low_complexity Low_complexity 1 21 0 1911 160 10 3 chrX 10659768 10660075 -151939855 + AluJo SINE Alu 1 309 -3 27 0 0 0 chrX 10660133 10660160 -151939770 + AT_rich Low_complexity Low_complexity 1 27 0 242 339 88 10 chrX 10660755 10660916 -151939014 - MIR SINE MIR -67 141 13 372 336 8 8 chrX 10662469 10662594 -151937336 + MIR3 SINE MIR 53 177 -31 1904 201 40 50 chrX 10662689 10663001 -151936929 + Charlie4a DNA MER1_type 17 331 -1630 1101 233 9 5 chrX 10663001 10663216 -151936714 + MER20 DNA MER1_type 1 216 -3 1904 201 40 50 chrX 10663216 10663363 -151936567 + Charlie4a DNA MER1_type 331 478 -1483 2266 137 80 0 chrX 10663363 10663700 -151936230 + THE1B LTR MaLR 1 364 0 12905 81 4 1 chrX 10663700 10665275 -151934655 + THE1B-int LTR MaLR 1 1580 0 1984 110 64 135 chrX 10665275 10665667 -151934263 + THE1B LTR MaLR 1 364 0 1904 201 40 50 chrX 10665667 10665701 -151934229 + Charlie4a DNA MER1_type 475 508 0 311 289 22 0 chrX 10666272 10666362 -151933568 - L1MC4a LINE L1 -1872 5936 5845 1590 161 95 3 chrX 10666437 10666722 -151933208 - AluJo SINE Alu -1 311 1 312 260 14 0 chrX 10667984 10668057 -151931873 - MIR SINE MIR -141 121 48 2277 105 7 0 chrX 10668203 10668509 -151931421 + AluSx SINE Alu 1 308 -4 24 0 0 0 chrX 10668572 10668596 -151931334 + AT_rich Low_complexity Low_complexity 1 24 0 803 168 0 8 chrX 10669087 10669206 -151930724 + FLAM_A SINE Alu 1 118 -15 543 296 62 16 chrX 10669283 10669540 -151930390 - LTR16C LTR ERVL 0 491 223 334 301 88 9 chrX 10670144 10670257 -151929673 - MIR SINE MIR -33 229 108 520 313 25 95 chrX 10670269 10670595 -151929335 - L2 LINE L2 -4 3268 2966 993 226 72 0 chrX 10670723 10670808 -151929122 + MER58A DNA MER1_type 2 79 -2341 1698 206 0 3 chrX 10670808 10671118 -151928812 + AluJb SINE Alu 3 311 -1 993 226 72 0 chrX 10671118 10671240 -151928690 + MER58A DNA MER1_type 79 224 0 773 306 65 45 chrX 10671254 10671329 -151928601 - L2 LINE L2 -528 2786 2714 1851 122 61 7 chrX 10671329 10671608 -151928322 - AluSx SINE Alu -17 295 2 773 306 65 45 chrX 10671608 10671931 -151927999 - L2 LINE L2 -600 2714 2380 1367 167 0 9 chrX 10672253 10672474 -151927456 - AluJo SINE Alu -9 303 85 2461 91 3 0 chrX 10673535 10673842 -151926088 - AluSp SINE Alu -5 308 1 1574 270 24 0 chrX 10675362 10675743 -151924187 - LTR16C LTR ERVL -2 489 100 229 388 97 22 chrX 10675883 10676339 -151923591 + L2 LINE L2 385 874 -2440 379 293 32 8 chrX 10676741 10676864 -151923066 + MIR SINE MIR 92 217 -45 371 242 60 54 chrX 10676984 10677133 -151922797 + MIR SINE MIR 28 177 -85 279 308 44 25 chrX 10677787 10677946 -151921984 + MIR SINE MIR 97 258 -4 457 276 8 8 chrX 10678539 10678662 -151921268 + L2 LINE L2 3187 3309 -4 207 69 0 0 chrX 10679667 10679696 -151920234 + (TTA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chrX 10679853 10679883 -151920047 + AT_rich Low_complexity Low_complexity 1 30 0 237 192 39 19 chrX 10680472 10680524 -151919406 - MLT1H LTR MaLR 0 549 497 1506 190 7 20 chrX 10680536 10680836 -151919094 - L1MB4 LINE L1 0 6180 5885 906 250 110 25 chrX 10680848 10681204 -151918726 - MLT1H LTR MaLR -142 407 22 513 233 16 31 chrX 10681235 10681364 -151918566 + MIR SINE MIR 54 180 -82 252 0 0 0 chrX 10681789 10681817 -151918113 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 2263 97 3 13 chrX 10681951 10682260 -151917670 - AluSp SINE Alu -7 306 1 304 252 30 96 chrX 10682271 10682406 -151917524 - MIR3 SINE MIR -48 160 35 226 294 20 10 chrX 10682652 10682754 -151917176 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 329 299 74 7 chrX 10682780 10682923 -151917007 + MIR SINE MIR 35 187 -62 2393 90 0 0 chrX 10733383 10733682 -151866248 - AluSg SINE Alu -11 299 1 884 137 17 105 chrX 10733860 10734124 -151865806 + L1M3 LINE L1 5387 5609 -574 2185 130 0 0 chrX 10734124 10734432 -151865498 + AluSx SINE Alu 1 308 -4 289 276 203 11 chrX 10734442 10734703 -151865227 - L2 LINE L2 -609 2705 2395 812 286 25 0 chrX 10734751 10734954 -151864976 - MER58A DNA MER1_type -16 208 1 380 293 115 13 chrX 10734962 10735119 -151864811 - L2 LINE L2 -1024 2290 2118 438 256 137 21 chrX 10735268 10735428 -151864502 + MIR SINE MIR 2 182 -62 475 246 64 115 chrX 10736028 10736164 -151863766 - L1MC4 LINE L1 -966 7076 6935 660 208 24 8 chrX 10736164 10736289 -151863641 - FLAM_A SINE Alu -6 127 1 475 246 64 115 chrX 10736289 10736465 -151863465 - L1MC4 LINE L1 -1107 6935 6780 329 251 101 84 chrX 10736459 10736638 -151863292 + L1MC5 LINE L1 6999 7180 -781 * 4156 172 28 44 chrX 10736778 10737568 -151862362 - L1MB8 LINE L1 -1 6177 5376 2343 99 0 3 chrX 10737568 10737881 -151862049 - AluSx SINE Alu 0 312 1 4156 172 28 44 chrX 10737881 10737960 -151861970 - L1MB8 LINE L1 -802 5376 5297 3760 136 80 0 chrX 10737960 10738561 -151861369 - L1MC1 LINE L1 0 6333 5685 4156 172 28 44 chrX 10738561 10738686 -151861244 - L1MB8 LINE L1 -881 5297 5172 2418 79 0 10 chrX 10738686 10738990 -151860940 - AluSg SINE Alu -9 301 1 4156 172 28 44 chrX 10738990 10739181 -151860749 - L1MB8 LINE L1 -1006 5172 5007 1443 102 20 0 chrX 10739204 10739496 -151860434 + AluJb SINE Alu 110 405 0 446 167 118 0 chrX 10739496 10739598 -151860332 - L1MB8 LINE L1 -1107 5039 4926 225 271 71 12 chrX 10739643 10739728 -151860202 + L1MC4 LINE L1 7899 7988 -54 1445 180 46 4 chrX 10740000 10740312 -151859618 + MER33 DNA MER1_type 1 313 -11 276 330 52 0 chrX 10740385 10740482 -151859448 + MIR SINE MIR 19 120 -88 204 296 28 14 chrX 10740501 10740572 -151859358 - L2 LINE L2 -4 3309 3238 258 158 0 0 chrX 10740917 10740955 -151858975 + MLT1I LTR MaLR 98 135 -274 421 193 45 23 chrX 10740999 10741087 -151858843 + MLT1G1 LTR MaLR 224 313 -282 1317 158 29 0 chrX 10741112 10741321 -151858609 + MER20 DNA MER1_type 2 216 -3 1503 231 43 5 chrX 10742815 10743187 -151856743 - MER58D DNA MER1_type 0 386 1 297 250 9 37 chrX 10743443 10743551 -151856379 + C-rich Low_complexity Low_complexity 4 108 0 246 256 0 23 chrX 10743559 10743645 -151856285 + (CCG)n Simple_repeat Simple_repeat 2 85 0 23 0 0 0 chrX 10743791 10743814 -151856116 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 10743922 10743951 -151855979 + GC_rich Low_complexity Low_complexity 1 29 0 202 312 130 7 chrX 10744280 10744434 -151855496 - MER5B DNA MER1_type -5 173 1 862 181 82 16 chrX 10744835 10745017 -151854913 + L1M4 LINE L1 4901 5094 -1052 1465 268 92 15 chrX 10746228 10746706 -151853224 - MLT1G1 LTR MaLR -7 588 74 437 167 26 0 chrX 10747027 10747105 -151852825 - MER58 DNA MER1_type 0 2420 2341 1366 174 156 46 chrX 10747110 10747501 -151852429 - MLT1D LTR MaLR -70 435 2 237 195 0 0 chrX 10747502 10747543 -151852387 - MER58 DNA MER1_type -137 78 38 2353 171 10 10 chrX 10747593 10747984 -151851946 - MSTD LTR MaLR -5 391 1 896 147 0 29 chrX 10748213 10748349 -151851581 - FLAM_A SINE Alu -1 132 1 2375 79 16 3 chrX 10748384 10748687 -151851243 - AluSp SINE Alu -6 307 1 1081 156 9 73 chrX 10748974 10749192 -151850738 - MER46A DNA MER2_type -1 235 32 2120 117 3 10 chrX 10749248 10749547 -151850383 + AluSx SINE Alu 1 297 -15 1506 261 156 31 chrX 10750002 10750785 -151849145 + HAL1 LINE L1 1627 2507 0 2920 158 66 19 chrX 10750800 10751331 -151848599 + MER68 LTR ERV1 3 558 -4 1224 172 21 21 chrX 10751835 10752073 -151847857 + L1MD2 LINE L1 6122 6359 0 1530 206 108 30 chrX 10752258 10752691 -151847239 - MLT1C LTR MaLR 0 467 1 1534 156 31 49 chrX 10753076 10753364 -151846566 - MER58 DNA MER1_type -58 283 1 519 17 0 0 chrX 10753394 10753454 -151846476 + (TG)n Simple_repeat Simple_repeat 2 61 0 281 269 201 52 chrX 10753467 10753716 -151846214 - L3 LINE CR1 -640 937 652 2338 86 0 7 chrX 10753782 10754095 -151845835 - AluSx SINE Alu 0 312 1 1975 108 21 7 chrX 10754512 10754826 -151845104 - AluSq SINE Alu 0 318 1 1543 218 121 20 chrX 10755199 10755475 -151844455 - MLT1D LTR MaLR 0 505 258 1897 137 3 36 chrX 10755475 10755782 -151844148 - AluJo SINE Alu -14 298 2 1543 218 121 20 chrX 10755782 10755960 -151843970 - MLT1D LTR MaLR -247 258 5 465 267 33 0 chrX 10756037 10756157 -151843773 + MER94 DNA DNA 10 133 -1 2298 109 0 0 chrX 10756335 10756628 -151843302 - AluSx SINE Alu -19 293 1 241 260 68 14 chrX 10757299 10757372 -151842558 + L1ME LINE L1 5748 5824 -297 331 314 28 28 chrX 10757407 10757574 -151842356 + MIR SINE MIR 13 180 -28 1774 220 15 3 chrX 10757584 10757921 -151842009 - MER58B DNA MER1_type 0 341 1 2401 78 0 16 chrX 10757977 10758285 -151841645 + AluSx SINE Alu 1 303 -9 455 86 71 14 chrX 10758923 10758993 -151840937 - MSTD LTR MaLR -2 394 321 2322 79 0 7 chrX 10758994 10759285 -151840645 + AluSq SINE Alu 2 290 -23 1623 155 51 83 chrX 10759725 10760120 -151839810 + MLT2D LTR ERVL 4 480 -40 286 181 48 0 chrX 10760126 10760209 -151839721 + (TATG)n Simple_repeat Simple_repeat 1 87 0 326 134 0 5 chrX 10760209 10760223 -151839707 + MLT2B1 LTR ERVL 391 404 -116 186 43 0 0 chrX 10760223 10760246 -151839684 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 10760246 10760287 -151839643 + MLT2B1 LTR ERVL 404 520 0 349 223 106 0 chrX 10760566 10760660 -151839270 - Charlie7 DNA MER1_type -2507 105 2 24 0 0 0 chrX 10761008 10761032 -151838898 + AT_rich Low_complexity Low_complexity 1 24 0 213 289 0 0 chrX 10761375 10761427 -151838503 + MER91B DNA MER1_type 79 130 -60 435 232 11 42 chrX 10761455 10761550 -151838380 + MER91B DNA MER1_type 98 189 -1 215 237 0 34 chrX 10761670 10761729 -151838201 - L2 LINE L2 0 3313 3257 302 271 161 9 chrX 10761973 10762116 -151837814 - MIR SINE MIR -65 143 28 21 0 0 0 chrX 10762605 10762626 -151837304 + AT_rich Low_complexity Low_complexity 1 21 0 593 265 111 20 chrX 10762675 10762980 -151836950 - L1MC4 LINE L1 0 8042 7604 627 302 86 7 chrX 10762985 10763263 -151836667 - MLT1H LTR MaLR 0 549 250 2590 194 18 22 chrX 10763727 10764237 -151835693 - LTR31 LTR ERV1 -8 611 104 1841 163 17 0 chrX 10764278 10764567 -151835363 - AluJo SINE Alu -18 294 1 208 331 110 55 chrX 10764885 10765012 -151834918 + MIR SINE MIR 59 192 -70 474 301 56 20 chrX 10765319 10765515 -151834415 - MIR SINE MIR 0 262 60 320 317 50 25 chrX 10765980 10766100 -151833830 - L2 LINE L2 -1 3271 3149 290 297 42 8 chrX 10766226 10766344 -151833586 - MIR SINE MIR -121 141 20 31 76 0 0 chrX 10769919 10769985 -151829945 + AT_rich Low_complexity Low_complexity 1 66 0 306 324 19 0 chrX 10770063 10770168 -151829762 - MIR SINE MIR -5 257 151 629 279 43 31 chrX 10770179 10770437 -151829493 + MIR SINE MIR 2 262 0 263 113 97 16 chrX 10770852 10770914 -151829016 + Charlie7 DNA MER1_type 2460 2526 -86 216 97 0 0 chrX 10770914 10770945 -151828985 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 624 236 130 20 chrX 10771082 10771374 -151828556 - L1MC5 LINE L1 -7 7954 7631 263 254 48 24 chrX 10771379 10771505 -151828425 - L1ME4a LINE L1 -53 6068 5940 360 155 18 31 chrX 10772131 10772205 -151827725 + AluSg/x SINE Alu 120 180 -120 205 200 0 0 chrX 10772214 10772254 -151827676 + A-rich Low_complexity Low_complexity 1 40 0 240 111 0 0 chrX 10772335 10772371 -151827559 + (TG)n Simple_repeat Simple_repeat 1 36 0 306 279 19 39 chrX 10773201 10773305 -151826625 - L2 LINE L2 0 3272 3171 5326 174 52 14 chrX 10773385 10774424 -151825506 - Tigger6a DNA MER2_type 0 1083 6 977 232 14 5 chrX 10774438 10774645 -151825285 + MER3 DNA MER1_type 1 209 0 2340 198 105 70 chrX 10775547 10776177 -151823753 - MLT1E1 LTR MaLR 0 654 3 5869 83 39 10 chrX 10776882 10777673 -151822257 + L1MA2 LINE L1 5491 6304 0 531 283 63 19 chrX 10777939 10778144 -151821786 - MIR SINE MIR 0 262 49 236 257 95 63 chrX 10778215 10778468 -151821462 - HAL1 LINE L1 -25 2482 2222 1201 168 22 0 chrX 10778921 10779106 -151820824 + MER5A DNA MER1_type 1 189 0 2189 97 7 7 chrX 10779647 10779946 -151819984 - AluSx SINE Alu -13 299 1 1528 40 0 0 chrX 10779956 10780129 -151819801 - AluY SINE Alu -8 303 131 2547 64 0 6 chrX 10780273 10780584 -151819346 + AluSp SINE Alu 1 309 -4 640 242 91 80 chrX 10780611 10780875 -151819055 - MLT1H1 LTR MaLR -288 267 1 310 272 62 68 chrX 10780892 10781054 -151818876 - HAL1 LINE L1 -550 1957 1797 554 319 86 26 chrX 10781093 10781277 -151818653 - HAL1 LINE L1 -812 1695 1524 2269 90 16 10 chrX 10781277 10781587 -151818343 - AluSx SINE Alu 0 312 1 554 319 86 26 chrX 10781587 10781831 -151818099 - HAL1 LINE L1 -983 1524 1241 2217 104 17 0 chrX 10782120 10782417 -151817513 - AluSx SINE Alu -10 302 1 2418 82 0 0 chrX 10782460 10782754 -151817176 + AluSc SINE Alu 1 294 -15 243 306 16 16 chrX 10782783 10782904 -151817026 - L1 LINE L1 -1088 5058 4938 848 126 21 28 chrX 10783238 10783381 -151816549 + FLAM_C SINE Alu 1 142 -1 272 287 122 9 chrX 10784597 10784712 -151815218 + L2 LINE L2 2729 2856 -458 2831 250 55 81 chrX 10784996 10785109 -151814821 - MER69B DNA AcHobo -1300 1226 1112 1997 133 3 0 chrX 10785109 10785426 -151814504 - AluSq SINE Alu 0 318 1 2831 250 55 81 chrX 10785426 10786556 -151813374 - MER69B DNA AcHobo -1414 1112 15 738 242 9 3 chrX 10786555 10786729 -151813201 - MLT1F LTR MaLR -378 164 1 * 2395 82 3 7 chrX 10786905 10787209 -151812721 + AluSp SINE Alu 1 303 -10 447 314 24 39 chrX 10787306 10787537 -151812393 + L1ME3A LINE L1 5940 6161 -1 419 320 16 0 chrX 10787927 10788049 -151811881 + MIR SINE MIR 2 125 -137 976 181 0 125 chrX 10788574 10788617 -151811313 + MER20 DNA MER1_type 1 48 -171 3595 151 50 18 chrX 10788617 10788831 -151811099 - LTR26E LTR ERV1 0 622 416 1624 104 0 0 chrX 10788831 10789042 -151810888 + AluSg/x SINE Alu 84 294 -18 3595 151 50 18 chrX 10789042 10789430 -151810500 - LTR26E LTR ERV1 -206 416 1 976 181 0 125 chrX 10789430 10789508 -151810422 + MER20 DNA MER1_type 48 78 -141 2113 102 6 35 chrX 10789508 10789821 -151810109 + AluSq SINE Alu 1 304 -9 976 181 0 125 chrX 10789821 10789946 -151809984 + MER20 DNA MER1_type 78 217 -2 2840 145 117 26 chrX 10790394 10790939 -151808991 + LTR49 LTR ERV1 1 595 0 2815 145 86 43 chrX 10791144 10791724 -151808206 + L1MB7 LINE L1 5580 6184 0 234 184 0 0 chrX 10791736 10791774 -151808156 - L1MC/D LINE L1 -662 5697 5660 1309 119 5 21 chrX 10791837 10792031 -151807899 + MER4A LTR ERV1 474 664 0 426 342 86 53 chrX 10792205 10792565 -151807365 + L2 LINE L2 2897 3268 -4 2099 130 0 3 chrX 10792658 10792965 -151806965 + AluSx SINE Alu 1 306 -6 532 302 39 28 chrX 10793039 10793102 -151806828 - MER5A DNA MER1_type 0 189 128 5576 45 0 0 chrX 10793102 10793729 -151806201 + L1PA5 LINE L1 5526 6152 -2 532 302 39 28 chrX 10793729 10793844 -151806086 - MER5A DNA MER1_type -61 128 9 998 201 11 0 chrX 10793960 10794144 -151805786 - MER5A DNA MER1_type 0 189 4 290 297 42 8 chrX 10794330 10794448 -151805482 + MIR SINE MIR 20 141 -121 320 317 50 25 chrX 10794574 10794694 -151805236 + L2 LINE L2 3149 3271 -1 474 301 56 20 chrX 10795159 10795355 -151804575 + MIR SINE MIR 60 262 0 208 331 110 55 chrX 10795662 10795789 -151804141 - MIR SINE MIR -70 192 59 1841 163 17 0 chrX 10796107 10796396 -151803534 + AluJo SINE Alu 1 294 -18 2590 194 18 22 chrX 10796436 10796946 -151802984 + LTR31 LTR ERV1 104 611 -8 627 302 86 7 chrX 10797410 10797688 -151802242 + MLT1H LTR MaLR 250 549 0 605 262 101 28 chrX 10797711 10797997 -151801933 + L1MC4 LINE L1 7736 8042 0 21 0 0 0 chrX 10798047 10798068 -151801862 + AT_rich Low_complexity Low_complexity 1 21 0 302 271 161 9 chrX 10798557 10798700 -151801230 + MIR SINE MIR 28 143 -65 215 237 0 34 chrX 10798944 10799003 -151800927 + L2 LINE L2 3257 3313 0 435 232 11 42 chrX 10799123 10799218 -151800712 - MER91B DNA MER1_type -1 189 98 213 289 0 0 chrX 10799246 10799298 -151800632 - MER91B DNA MER1_type -60 130 79 24 0 0 0 chrX 10799641 10799665 -151800265 + AT_rich Low_complexity Low_complexity 1 24 0 349 223 106 0 chrX 10800013 10800107 -151799823 + Charlie7 DNA MER1_type 2 105 -2507 326 134 0 5 chrX 10800386 10800427 -151799503 - MLT2B1 LTR ERVL 0 520 480 186 43 0 0 chrX 10800427 10800450 -151799480 + (TG)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 10800450 10800464 -151799466 - MLT2B1 LTR ERVL -40 480 391 286 181 48 0 chrX 10800464 10800547 -151799383 + (CATA)n Simple_repeat Simple_repeat 1 87 0 1623 155 51 83 chrX 10800553 10800948 -151798982 - MLT2D LTR ERVL -40 480 4 2373 76 0 3 chrX 10801388 10801679 -151798251 - AluSq SINE Alu -23 290 1 2410 90 0 0 chrX 10802189 10802490 -151797440 - AluSg SINE Alu -9 301 1 2632 137 145 100 chrX 10802668 10802931 -151796999 + L1MB2 LINE L1 5387 5637 -534 2268 113 0 0 chrX 10802931 10803232 -151796698 + AluSq SINE Alu 1 301 -12 2632 137 145 100 chrX 10803232 10803617 -151796313 + L1MB2 LINE L1 5637 6064 -107 360 337 23 55 chrX 10803677 10804110 -151795820 + HAL1 LINE L1 1212 1630 -877 761 273 4 24 chrX 10804128 10804355 -151795575 - MIR SINE MIR -16 246 25 218 286 16 16 chrX 10804683 10804746 -151795184 + MIR SINE MIR 29 91 -171 331 247 32 43 chrX 10804746 10804839 -151795091 - LTR16A1 LTR ERVL -178 279 188 607 260 165 44 chrX 10805136 10805524 -151794406 - MLT1L LTR MaLR -179 436 2 243 0 0 0 chrX 10805729 10805756 -151794174 + (T)n Simple_repeat Simple_repeat 1 27 0 729 259 151 49 chrX 10805822 10806331 -151793599 - MLT1F1 LTR MaLR -6 561 1 262 274 48 0 chrX 10807275 10807337 -151792593 - L2 LINE L2 -15 3298 3234 1062 181 68 0 chrX 10807359 10807536 -151792394 - MER5A DNA MER1_type 0 189 1 1590 143 28 16 chrX 10807556 10807807 -151792123 + AluJo SINE Alu 45 298 -14 2296 114 0 7 chrX 10808118 10808425 -151791505 + AluSx SINE Alu 1 305 -7 798 285 48 22 chrX 10808760 10809072 -151790858 + HAL1 LINE L1 1 320 -2187 2022 166 5 87 chrX 10809082 10809498 -151790432 + MLT1B LTR MaLR 9 390 0 1420 189 25 14 chrX 10809543 10809685 -151790245 - MSTD LTR MaLR -107 289 150 2141 103 0 0 chrX 10809685 10809967 -151789963 - AluSx SINE Alu -30 282 1 1420 189 25 14 chrX 10809967 10810110 -151789820 - MSTD LTR MaLR -246 150 1 711 180 39 0 chrX 10810253 10810381 -151789549 - MLT1D LTR MaLR 0 505 373 1831 154 7 20 chrX 10810381 10810686 -151789244 + AluJo SINE Alu 1 301 -11 11800 69 38 0 chrX 10810686 10812620 -151787310 + L1P2 LINE L1 3696 5709 -445 1337 186 9 32 chrX 10812620 10812917 -151787013 - MLT1D LTR MaLR -173 332 1 494 164 118 9 chrX 10812926 10813036 -151786894 + HAL1 LINE L1 743 864 -1643 325 266 169 16 chrX 10813036 10813160 -151786770 + MIR SINE MIR 118 260 -2 1816 220 73 109 chrX 10813177 10813402 -151786528 + HAL1 LINE L1 857 1089 -1418 308 153 17 17 chrX 10813402 10813461 -151786469 - MER116 DNA Mariner -13 67 9 1816 220 73 109 chrX 10813461 10814119 -151785811 + HAL1 LINE L1 1089 1764 -743 188 200 100 67 chrX 10814234 10814294 -151785636 - MER5A DNA MER1_type -7 182 121 1268 187 47 0 chrX 10814472 10814686 -151785244 + MER58A DNA MER1_type 1 224 0 256 207 184 23 chrX 10814762 10814849 -151785081 - MIR3 SINE MIR -5 203 103 362 65 0 0 chrX 10814853 10814899 -151785031 - MADE1 DNA Mariner -34 46 1 566 256 106 19 chrX 10815505 10815746 -151784184 - MLT1J1 LTR MaLR -106 340 68 841 188 0 8 chrX 10815791 10815924 -151784006 - FLAM_A SINE Alu -1 132 1 200 205 0 0 chrX 10817353 10817392 -151782538 + (CAT)n Simple_repeat Simple_repeat 3 41 0 695 232 54 6 chrX 10817452 10817620 -151782310 + MER5B DNA MER1_type 1 176 -2 205 257 29 0 chrX 10817996 10818066 -151781864 + (CAGCG)n Simple_repeat Simple_repeat 5 76 0 1276 183 127 4 chrX 10818256 10818524 -151781406 - AluJb SINE Alu 0 302 2 366 267 56 11 chrX 10818777 10818867 -151781063 - MER91C DNA MER1_type 0 140 47 711 150 142 0 chrX 10819616 10819729 -151780201 + AluSg SINE Alu 2 130 -180 25 31 0 0 chrX 10819729 10819761 -151780169 + AT_rich Low_complexity Low_complexity 1 32 0 2217 111 3 0 chrX 10819894 10820191 -151779739 - AluSq SINE Alu -15 298 1 680 270 64 15 chrX 10820550 10820754 -151779176 + MIR SINE MIR 13 226 -36 1266 70 13 0 chrX 10820860 10821016 -151778914 + L1PA10 LINE L1 6007 6164 -4 1890 162 0 10 chrX 10821543 10821845 -151778085 + AluJb SINE Alu 1 299 -13 471 301 7 0 chrX 10822669 10822812 -151777118 - Charlie8 DNA MER1_type -2192 225 82 2023 121 0 46 chrX 10822814 10823121 -151776809 + AluSx SINE Alu 1 293 -19 1333 203 29 8 chrX 10823301 10823603 -151776327 + L1MD3 LINE L1 7600 7994 -1 1240 160 38 9 chrX 10824203 10824416 -151775514 - MER20 DNA MER1_type 0 219 1 448 187 0 0 chrX 10824503 10824578 -151775352 - MER116 DNA Mariner -3 77 3 28 0 0 0 chrX 10824757 10824785 -151775145 + AT_rich Low_complexity Low_complexity 1 28 0 416 285 162 1 chrX 10825690 10825867 -151774063 + MIR SINE MIR 41 243 -19 276 30 0 0 chrX 10826866 10826899 -151773031 + (TG)n Simple_repeat Simple_repeat 2 34 0 1028 157 52 33 chrX 10827225 10827435 -151772495 + MER58 DNA MER1_type 2 215 -2205 306 296 136 70 chrX 10827519 10827803 -151772127 - L2 LINE L2 -46 3267 3003 2613 59 0 0 chrX 10827803 10828109 -151771821 + AluY SINE Alu 1 306 -5 306 296 136 70 chrX 10828109 10828370 -151771560 - L2 LINE L2 -310 3003 2761 2183 130 0 0 chrX 10828370 10828678 -151771252 + AluSx SINE Alu 1 308 -4 306 296 136 70 chrX 10828678 10828949 -151770981 - L2 LINE L2 -552 2761 2395 812 286 25 0 chrX 10828997 10829200 -151770730 - MER58A DNA MER1_type -16 208 1 398 287 115 13 chrX 10829208 10829365 -151770565 - L2 LINE L2 -1024 2290 2118 438 256 137 21 chrX 10829514 10829674 -151770256 + MIR SINE MIR 2 182 -62 458 249 64 115 chrX 10830274 10830410 -151769520 - L1MC4 LINE L1 -966 7076 6935 660 208 24 8 chrX 10830410 10830535 -151769395 - FLAM_A SINE Alu -6 127 1 458 249 64 115 chrX 10830535 10830711 -151769219 - L1MC4 LINE L1 -1107 6935 6780 329 251 101 84 chrX 10830705 10830884 -151769046 + L1MC5 LINE L1 6999 7180 -781 * 4192 174 29 55 chrX 10831024 10831819 -151768111 - L1MB8 LINE L1 -1 6177 5363 2357 96 0 3 chrX 10831819 10832131 -151767799 - AluSx SINE Alu -1 311 1 4192 174 29 55 chrX 10832131 10832210 -151767720 - L1MB8 LINE L1 -815 5363 5283 3760 136 80 0 chrX 10832210 10832811 -151767119 - L1MC1 LINE L1 0 6333 5685 4192 174 29 55 chrX 10832811 10832936 -151766994 - L1MB8 LINE L1 -895 5283 5156 2418 79 0 10 chrX 10832936 10833240 -151766690 - AluSg SINE Alu -9 301 1 4192 174 29 55 chrX 10833240 10833431 -151766499 - L1MB8 LINE L1 -1022 5156 5007 1485 101 15 0 chrX 10833454 10833747 -151766183 + AluJb SINE Alu 110 405 0 437 176 118 0 chrX 10833747 10833849 -151766081 - L1MB8 LINE L1 -1107 5039 4926 287 275 150 31 chrX 10833819 10833979 -151765951 + L1MC4 LINE L1 7810 7988 -54 * 1445 180 46 4 chrX 10834251 10834563 -151765367 + MER33 DNA MER1_type 1 313 -11 276 330 52 0 chrX 10834636 10834733 -151765197 + MIR SINE MIR 19 120 -88 204 296 28 14 chrX 10834752 10834823 -151765107 - L2 LINE L2 -4 3309 3238 258 158 0 0 chrX 10835168 10835206 -151764724 + MLT1I LTR MaLR 98 135 -274 421 193 45 23 chrX 10835250 10835338 -151764592 + MLT1G1 LTR MaLR 224 313 -282 1320 158 29 0 chrX 10835363 10835572 -151764358 + MER20 DNA MER1_type 2 216 -3 1503 231 43 5 chrX 10837066 10837438 -151762492 - MER58D DNA MER1_type 0 386 1 297 250 9 37 chrX 10837693 10837801 -151762129 + C-rich Low_complexity Low_complexity 4 108 0 246 256 0 23 chrX 10837809 10837895 -151762035 + (CCG)n Simple_repeat Simple_repeat 2 85 0 23 0 0 0 chrX 10838041 10838064 -151761866 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 10838172 10838201 -151761729 + GC_rich Low_complexity Low_complexity 1 29 0 202 312 130 7 chrX 10838530 10838684 -151761246 - MER5B DNA MER1_type -5 173 1 862 181 82 16 chrX 10839085 10839267 -151760663 + L1M4 LINE L1 4901 5094 -1052 1465 268 92 15 chrX 10840478 10840956 -151758974 - MLT1G1 LTR MaLR -7 588 74 477 165 13 0 chrX 10841277 10841356 -151758574 - MER58 DNA MER1_type 0 2420 2341 1405 174 156 44 chrX 10841361 10841751 -151758179 - MLT1D LTR MaLR -70 435 2 237 195 0 0 chrX 10841752 10841793 -151758137 - MER58 DNA MER1_type -137 78 38 2353 171 10 10 chrX 10841843 10842234 -151757696 - MSTD LTR MaLR -5 391 1 896 147 0 29 chrX 10842463 10842599 -151757331 - FLAM_A SINE Alu -1 132 1 2413 73 16 3 chrX 10842633 10842936 -151756994 - AluSp SINE Alu -6 307 1 1093 157 9 65 chrX 10843223 10843439 -151756491 - MER46A DNA MER2_type -1 235 32 2123 124 3 3 chrX 10843495 10843794 -151756136 + AluSx SINE Alu 1 299 -13 1523 259 156 31 chrX 10844249 10845032 -151754898 + HAL1 LINE L1 1627 2507 0 2893 160 66 19 chrX 10845047 10845578 -151754352 + MER68 LTR ERV1 3 558 -4 1224 172 21 21 chrX 10846082 10846320 -151753610 + L1MD2 LINE L1 6122 6359 0 1530 206 108 30 chrX 10846505 10846938 -151752992 - MLT1C LTR MaLR 0 467 1 1534 156 31 49 chrX 10847323 10847611 -151752319 - MER58 DNA MER1_type -58 283 1 393 22 0 0 chrX 10847641 10847687 -151752243 + (TG)n Simple_repeat Simple_repeat 2 47 0 281 269 201 52 chrX 10847700 10847949 -151751981 - L3 LINE CR1 -640 937 652 2338 86 0 7 chrX 10848015 10848328 -151751602 - AluSx SINE Alu 0 312 1 2045 101 22 4 chrX 10848745 10849058 -151750872 - AluSq SINE Alu 0 318 1 1527 220 121 20 chrX 10849431 10849707 -151750223 - MLT1D LTR MaLR 0 505 258 1897 137 3 36 chrX 10849707 10850014 -151749916 - AluJo SINE Alu -14 298 2 1527 220 121 20 chrX 10850014 10850192 -151749738 - MLT1D LTR MaLR -247 258 5 465 267 33 0 chrX 10850269 10850389 -151749541 + MER94 DNA DNA 10 133 -1 2283 113 0 0 chrX 10850568 10850861 -151749069 - AluSx SINE Alu -19 293 1 241 260 68 14 chrX 10851532 10851605 -151748325 + L1ME LINE L1 5748 5824 -297 331 314 28 28 chrX 10851640 10851807 -151748123 + MIR SINE MIR 13 180 -28 1774 220 15 3 chrX 10851817 10852154 -151747776 - MER58B DNA MER1_type 0 341 1 2378 81 0 16 chrX 10852210 10852518 -151747412 + AluSx SINE Alu 1 303 -9 840 168 183 208 chrX 10853156 10853227 -151746703 - MLT1A1 LTR MaLR -2 394 323 1987 69 126 0 chrX 10853227 10853489 -151746441 + AluSp SINE Alu 2 296 -17 840 168 183 208 chrX 10853489 10853821 -151746109 - MLT1A1 LTR MaLR -73 323 1 277 261 19 64 chrX 10854151 10854285 -151745645 - L1ME4a LINE L1 -46 6075 5947 2413 77 0 0 chrX 10854285 10854582 -151745348 - AluY SINE Alu -10 301 5 277 261 19 64 chrX 10854582 10854604 -151745326 - L1ME4a LINE L1 -174 5947 5926 243 0 0 0 chrX 10854708 10854735 -151745195 + (TG)n Simple_repeat Simple_repeat 2 28 0 237 333 10 10 chrX 10854886 10854988 -151744942 - MIR SINE MIR -93 169 68 237 33 0 0 chrX 10856380 10856410 -151743520 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1066 177 0 0 chrX 10857123 10857287 -151742643 + FRAM SINE Alu 1 164 -2 1360 164 26 74 chrX 10858719 10858764 -151741166 - L1MB7 LINE L1 -3 6181 6135 2287 117 0 0 chrX 10858764 10859073 -151740857 + AluSx SINE Alu 1 309 -3 1360 164 26 74 chrX 10859073 10859339 -151740591 - L1MB7 LINE L1 -49 6135 5885 653 263 82 47 chrX 10859683 10860048 -151739882 - L1MB7 LINE L1 -1993 5815 5438 225 175 208 58 chrX 10861199 10861319 -151738611 - L1ME4a LINE L1 -1 6120 5983 2242 106 3 0 chrX 10862059 10862362 -151737568 - AluSx SINE Alu -8 304 1 25 0 0 0 chrX 10862410 10862435 -151737495 + AT_rich Low_complexity Low_complexity 1 25 0 270 247 43 0 chrX 10862632 10862725 -151737205 - L1MEc LINE L1 -4092 2304 2208 2157 128 0 3 chrX 10862726 10863022 -151736908 - AluJb SINE Alu -17 295 1 482 293 78 28 chrX 10863171 10863458 -151736472 - L1MEc LINE L1 -861 1715 1500 192 77 0 0 chrX 10863888 10863914 -151736016 + (A)n Simple_repeat Simple_repeat 1 26 0 2890 195 26 18 chrX 10863928 10864498 -151735432 + L1MB5 LINE L1 5598 6172 -2 2319 104 10 0 chrX 10864506 10864814 -151735116 + AluSp SINE Alu 1 311 -2 625 184 40 24 chrX 10865286 10865411 -151734519 - FLAM_A SINE Alu -6 127 1 835 223 19 43 chrX 10866466 10866677 -151733253 + MER33 DNA MER1_type 5 210 -114 1047 170 95 10 chrX 10866678 10866878 -151733052 + MER20 DNA MER1_type 3 219 0 2947 177 18 14 chrX 10867480 10868045 -151731885 + L1MB4 LINE L1 5595 6161 -19 302 114 0 0 chrX 10868047 10868091 -151731839 - U2 snRNA snRNA -126 62 19 246 81 0 0 chrX 10868091 10868128 -151731802 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 292 262 63 74 chrX 10868229 10868401 -151731529 + MIR3 SINE MIR 1 167 -61 1088 231 47 0 chrX 10868517 10868729 -151731201 + MER58A DNA MER1_type 3 224 0 383 268 142 0 chrX 10871829 10871956 -151727974 + MIR SINE MIR 8 152 -110 198 0 0 0 chrX 10872205 10872227 -151727703 + (A)n Simple_repeat Simple_repeat 1 22 0 2601 40 0 0 chrX 10872785 10873088 -151726842 + AluY SINE Alu 1 303 -8 1890 109 12 4 chrX 10873417 10873673 -151726257 + AluSx SINE Alu 28 285 -27 806 199 0 0 chrX 10873697 10873828 -151726102 + FLAM_A SINE Alu 1 131 -2 372 337 47 18 chrX 10874113 10874282 -151725648 + MIR3 SINE MIR 16 189 -19 745 170 0 0 chrX 10874349 10874461 -151725469 - MER81 DNA DNA 0 114 3 386 119 0 15 chrX 10875139 10875206 -151724724 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 795 177 8 15 chrX 10875216 10875346 -151724584 - FLAM_A SINE Alu -3 130 2 1713 190 103 60 chrX 10875529 10875993 -151723937 + MER31A LTR ERV1 2 485 0 306 50 0 0 chrX 10876306 10876346 -151723584 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 2348 77 3 0 chrX 10876499 10876786 -151723144 - AluSp SINE Alu -23 290 3 709 125 16 16 chrX 10877559 10877687 -151722243 - MER20 DNA MER1_type -87 132 5 283 163 0 20 chrX 10877906 10878007 -151721923 - AluJo SINE Alu 0 340 241 907 189 0 13 chrX 10878008 10878167 -151721763 - AluJo SINE Alu -155 157 1 2002 141 3 25 chrX 10878339 10878482 -151721448 + AluJb SINE Alu 1 146 -166 2433 70 3 0 chrX 10878482 10878784 -151721146 + AluY SINE Alu 1 303 -8 2002 141 3 25 chrX 10878784 10878959 -151720971 + AluJb SINE Alu 146 312 0 1978 137 10 10 chrX 10879034 10879333 -151720597 - AluSq SINE Alu -14 299 1 32665 107 10 59 chrX 10879466 10883279 -151716651 - L1PA7 LINE L1 -15 6139 2784 2241 119 3 0 chrX 10883279 10883591 -151716339 - AluSp SINE Alu 0 313 1 32665 107 10 59 chrX 10883591 10886234 -151713696 - L1PA7 LINE L1 -3370 2784 13 486 305 13 26 chrX 10886323 10886477 -151713453 - MIR3 SINE MIR -3 205 54 2174 123 0 10 chrX 10886490 10886818 -151713112 + AluSx SINE Alu 1 312 0 319 85 21 0 chrX 10887143 10887190 -151712740 + MER5A DNA MER1_type 1 48 -141 2063 156 0 0 chrX 10887772 10888079 -151711851 + AluJo SINE Alu 1 307 -5 207 0 0 0 chrX 10888203 10888226 -151711704 + (T)n Simple_repeat Simple_repeat 1 23 0 554 276 49 6 chrX 10888302 10888465 -151711465 + MER5B DNA MER1_type 3 172 -6 281 266 175 22 chrX 10888684 10888863 -151711067 - L1MC/D LINE L1 -544 5577 5412 21 0 0 0 chrX 10888926 10888947 -151710983 + AT_rich Low_complexity Low_complexity 1 21 0 290 293 47 28 chrX 10889362 10889468 -151710462 + MLT1H LTR MaLR 20 127 -415 524 228 188 22 chrX 10889509 10889801 -151710129 + MLT1H LTR MaLR 229 553 -2 2453 90 0 0 chrX 10891875 10892186 -151707744 - AluSq SINE Alu -2 311 1 267 217 72 43 chrX 10892232 10892301 -151707629 - MIR3 SINE MIR -133 75 5 710 216 0 0 chrX 10892393 10892518 -151707412 + FLAM_C SINE Alu 2 126 -7 587 108 63 36 chrX 10892552 10892663 -151707267 - MER53 DNA DNA 0 189 76 536 308 92 15 chrX 10892950 10893278 -151706652 + L1MC4a LINE L1 5685 6037 -1771 335 108 31 0 chrX 10893323 10893388 -151706542 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3300 160 12 35 chrX 10893401 10893425 -151706505 + MER68 LTR ERV1 1 24 -538 2170 102 10 3 chrX 10893425 10893718 -151706212 + AluSq SINE Alu 1 295 -18 3300 160 12 35 chrX 10893718 10894268 -151705662 + MER68 LTR ERV1 24 562 0 192 40 0 0 chrX 10894276 10894301 -151705629 + (TC)n Simple_repeat Simple_repeat 2 26 0 401 214 0 31 chrX 10894439 10894598 -151705332 + CT-rich Low_complexity Low_complexity 3 156 0 31048 114 16 54 chrX 10895219 10901623 -151698307 - L1PA8 LINE L1 -6 6166 12 451 296 50 5 chrX 10901667 10901887 -151698043 + L1MC4 LINE L1 7813 8042 0 1878 155 4 0 chrX 10902341 10902618 -151697312 + AluSx SINE Alu 1 278 -34 207 0 0 0 chrX 10902622 10902645 -151697285 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 225 0 0 0 chrX 10902937 10902962 -151696968 + (TA)n Simple_repeat Simple_repeat 2 26 0 727 52 0 4 chrX 10902962 10903061 -151696869 - L1PA5 LINE L1 -13 6142 6044 1361 108 128 5 chrX 10903272 10903476 -151696454 + MER30 DNA MER1_type 1 229 -1 2867 10 0 0 chrX 10903765 10904076 -151695854 + AluYa5 SINE Alu 1 311 0 43809 50 2 1 chrX 10904726 10910861 -151689069 - L1PA5 LINE L1 -9 6145 3 2200 116 0 3 chrX 10910952 10911255 -151688675 + AluSg SINE Alu 1 302 -8 434 188 20 30 chrX 10911504 10911605 -151688325 - MER20B DNA MER1_type -2 781 682 404 289 19 13 chrX 10911658 10911814 -151688116 - L1M4 LINE L1 -1500 4646 4490 798 241 105 8 chrX 10911824 10912255 -151687675 - LTR33 LTR ERVL -9 512 14 491 306 33 0 chrX 10912502 10912685 -151687245 + MIR SINE MIR 74 262 0 1183 178 84 0 chrX 10913063 10913265 -151686665 + MER20 DNA MER1_type 1 219 0 24 32 0 0 chrX 10913647 10913678 -151686252 + AT_rich Low_complexity Low_complexity 1 31 0 241 333 0 70 chrX 10914430 10914445 -151685485 + MIR SINE MIR 47 61 -201 2047 153 80 49 chrX 10914445 10914897 -151685033 - MER31B LTR ERV1 0 466 1 241 333 0 70 chrX 10914897 10915037 -151684893 + MIR SINE MIR 61 191 -71 577 245 39 101 chrX 10915717 10915775 -151684155 + L1ME4a LINE L1 5610 5670 -451 3194 67 15 0 chrX 10915775 10916177 -151683753 + L1PA10 LINE L1 5760 6167 -1 577 245 39 101 chrX 10916177 10916424 -151683506 + L1ME4a LINE L1 5670 5896 -225 274 308 29 0 chrX 10916561 10916665 -151683265 - MIR SINE MIR -107 155 49 1076 203 98 67 chrX 10917015 10917331 -151682599 + MER58B DNA MER1_type 3 328 -13 714 218 184 49 chrX 10918599 10918947 -151680983 - MLT1G LTR MaLR 0 590 196 246 156 0 0 chrX 10918950 10918995 -151680935 + GA-rich Low_complexity Low_complexity 1 45 0 233 221 128 12 chrX 10919040 10919126 -151680804 + L2 LINE L2 1737 1832 -1482 1347 307 48 13 chrX 10919140 10919913 -151680017 + L2 LINE L2 2507 3305 -8 315 313 59 84 chrX 10920084 10920407 -151679523 - L1ME4a LINE L1 -89 6032 5718 2111 109 0 0 chrX 10920457 10920762 -151679168 + AluSx SINE Alu 1 305 0 223 326 11 21 chrX 10920975 10921070 -151678860 - MIR3 SINE MIR -1 207 114 387 237 52 21 chrX 10921731 10921828 -151678102 + L2 LINE L2 3170 3269 -3 3057 82 0 3 chrX 10921916 10922281 -151677649 + THE1B LTR MaLR 1 364 0 2185 120 3 0 chrX 10922376 10922677 -151677253 - AluSx SINE Alu -10 302 1 255 212 136 68 chrX 10922908 10923040 -151676890 + MIR SINE MIR 108 248 -14 343 202 0 140 chrX 10923695 10923809 -151676121 + MER58 DNA MER1_type 1 98 -2322 207 272 109 11 chrX 10924357 10924449 -151675481 - L2 LINE L2 -5 3308 3208 509 176 133 66 chrX 10924698 10924908 -151675022 + MER58 DNA MER1_type 1 2415 -5 833 196 101 6 chrX 10924922 10925090 -151674840 + MER3 DNA MER1_type 1 184 -25 1033 267 44 85 chrX 10925783 10926311 -151673619 - MLT1J LTR MaLR 0 511 6 242 258 101 22 chrX 10926503 10926592 -151673338 + L2 LINE L2 3137 3232 -40 368 256 136 42 chrX 10927097 10927288 -151672642 - L2 LINE L2 0 3313 3105 376 61 0 0 chrX 10927308 10927357 -151672573 + MIR SINE MIR 107 155 -107 2188 113 0 0 chrX 10927364 10927682 -151672248 + AluSq SINE Alu 1 318 0 235 193 101 118 chrX 10927683 10927802 -151672128 + MER46C DNA MER2_type 19 135 -203 49 107 0 0 chrX 10927802 10927998 -151671932 + AT_rich Low_complexity Low_complexity 1 196 0 1031 195 44 22 chrX 10927998 10928224 -151671706 + MER46C DNA MER2_type 108 338 0 401 247 22 0 chrX 10928233 10928322 -151671608 + MIR SINE MIR 172 262 0 710 320 76 12 chrX 10928356 10928845 -151671085 - L2 LINE L2 -245 3068 2544 529 134 116 71 chrX 10928993 10929105 -151670825 - MER63 DNA MER1_type -319 743 1 488 173 0 0 chrX 10929955 10930030 -151669900 + AluJ/FLAM SINE Alu 2 76 -236 1790 151 10 10 chrX 10930399 10930697 -151669233 - AluJo SINE Alu -12 300 3 449 254 59 0 chrX 10931053 10931171 -151668759 - MER94 DNA DNA -8 126 2 316 244 52 0 chrX 10931382 10931467 -151668463 + MIR SINE MIR 68 157 -51 2388 84 7 0 chrX 10935537 10935845 -151664085 + AluSg SINE Alu 1 310 0 1643 105 5 0 chrX 10938220 10938439 -151661491 + AluSg/x SINE Alu 83 302 -10 247 208 62 115 chrX 10940057 10940187 -151659743 - MIR SINE MIR -49 213 91 236 220 0 34 chrX 10941455 10941514 -151658416 - L1MC4 LINE L1 -1339 6703 6647 28 86 0 0 chrX 10941640 10941710 -151658220 + AT_rich Low_complexity Low_complexity 1 70 0 2373 96 3 0 chrX 10941739 10942040 -151657890 - AluSx SINE Alu -10 302 1 492 86 0 0 chrX 10942939 10943009 -151656921 + (TA)n Simple_repeat Simple_repeat 2 71 0 238 309 11 21 chrX 10943011 10943105 -151656825 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 * 240 304 14 0 chrX 10943037 10943106 -151656824 + (TG)n Simple_repeat Simple_repeat 1 70 0 205 188 0 0 chrX 10943801 10943833 -151656097 - L2 LINE L2 -81 3232 3201 2036 116 41 7 chrX 10943855 10944149 -151655781 + AluSx SINE Alu 1 304 -8 459 52 0 0 chrX 10944277 10944335 -151655595 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 391 301 9 9 chrX 10944336 10944449 -151655481 - L2 LINE L2 -2 3270 3158 321 322 33 39 chrX 10944617 10944797 -151655133 - L2 LINE L2 -901 2413 2235 539 210 0 0 chrX 10944848 10944948 -151654982 + MER5A DNA MER1_type 9 108 -81 1261 183 117 18 chrX 10945070 10945343 -151654587 - AluJo SINE Alu -12 300 1 862 201 29 6 chrX 10945381 10945555 -151654375 - MER5B DNA MER1_type 0 178 1 822 179 19 26 chrX 10945582 10945738 -151654192 - MER5A DNA MER1_type -4 185 31 220 383 109 34 chrX 10945744 10945919 -151654011 - MER5A DNA MER1_type -1 188 1 605 124 21 10 chrX 10946461 10946558 -151653372 + MER4A LTR ERV1 1 98 -566 1908 120 174 23 chrX 10946558 10946909 -151653021 + MER4A LTR ERV1 261 664 0 2417 38 42 0 chrX 10947393 10947682 -151652248 + AluY SINE Alu 2 302 -9 1803 122 20 0 chrX 10947724 10948010 -151651920 + AluJo SINE Alu 26 316 0 499 299 91 32 chrX 10948896 10949301 -151650629 + L1ME4a LINE L1 5690 6118 -3 236 54 54 0 chrX 10949371 10949408 -151650522 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 306 248 167 0 chrX 10949516 10949638 -151650292 + MIR SINE MIR 16 154 -62 575 203 12 49 chrX 10950424 10950587 -151649343 - MIR SINE MIR 0 262 106 297 0 0 0 chrX 10951010 10951083 -151648847 + (CA)n Simple_repeat Simple_repeat 1 106 0 297 0 0 0 chrX 10951083 10951116 -151648814 + (CA)n Simple_repeat Simple_repeat 2 34 0 1937 140 4 4 chrX 10951294 10951604 -151648326 - AluJb SINE Alu 0 313 4 1671 185 102 6 chrX 10952014 10952366 -151647564 - MER58D DNA MER1_type 0 386 1 237 297 144 17 chrX 10952481 10952599 -151647331 - L2 LINE L2 0 3272 3140 2267 64 0 0 chrX 10953979 10954246 -151645684 - AluSx SINE Alu -45 267 1 1993 133 0 3 chrX 10954477 10954787 -151645143 + AluSx SINE Alu 1 309 0 649 273 23 11 chrX 10954899 10955075 -151644855 + MER5B DNA MER1_type 1 178 0 1541 99 85 0 chrX 10955611 10955823 -151644107 - MER30 DNA MER1_type 0 230 1 366 261 43 26 chrX 10956154 10956269 -151643661 + MIR3 SINE MIR 40 156 -52 195 42 0 0 chrX 10956279 10956303 -151643627 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 186 212 0 0 chrX 10956629 10956662 -151643268 + L2 LINE L2 1102 1134 -2180 1944 190 53 31 chrX 10957613 10958065 -151641865 - MLT1C LTR MaLR -3 464 3 345 244 85 104 chrX 10958268 10958432 -151641498 - HAL1 LINE L1 -2286 221 61 264 100 0 0 chrX 10958473 10958513 -151641417 + (TC)n Simple_repeat Simple_repeat 2 41 0 1072 194 5 0 chrX 10959565 10959761 -151640169 + L1MC3 LINE L1 7225 7421 -364 337 265 282 6 chrX 10959761 10959931 -151639999 + L2 LINE L2 3095 3311 -2 1014 281 65 31 chrX 10959931 10960425 -151639505 - L1M3 LINE L1 -330 5838 5293 359 331 108 14 chrX 10960464 10960751 -151639179 + L1 LINE L1 4782 5095 -1051 940 271 93 31 chrX 10960757 10961177 -151638753 + L2 LINE L2 2172 2617 -697 1897 118 3 17 chrX 10961272 10961561 -151638369 + L1MA8 LINE L1 6000 6284 -7 1701 152 17 17 chrX 10961588 10961885 -151638045 - AluJb SINE Alu -15 297 1 240 273 15 0 chrX 10961943 10962009 -151637921 - L2 LINE L2 -1363 1951 1885 290 324 0 97 chrX 10962193 10962300 -151637630 + L2 LINE L2 2930 3013 -259 2022 89 4 0 chrX 10962300 10962557 -151637373 - AluSp SINE Alu -12 301 44 290 324 0 97 chrX 10962557 10962634 -151637296 + L2 LINE L2 3013 3096 -176 1664 236 73 52 chrX 10963048 10963526 -151636404 - MLT1E2 LTR MaLR 0 626 139 260 204 0 0 chrX 10963572 10963616 -151636314 - MLT1E2 LTR MaLR -580 44 1 537 290 78 42 chrX 10964329 10964546 -151635384 + MIR SINE MIR 4 228 -34 2025 140 0 3 chrX 10964954 10965254 -151634676 - AluJo SINE Alu -13 299 1 962 197 136 25 chrX 10968641 10969071 -151630859 - MLT1E LTR MaLR 0 593 81 313 179 0 18 chrX 10969196 10969252 -151630678 - MLT1E LTR MaLR -487 55 1 191 185 0 93 chrX 10970573 10970627 -151629303 - L2 LINE L2 -5 3267 3219 2808 150 28 78 chrX 10970899 10971399 -151628531 + LTR36 LTR ERV1 41 508 -103 5842 79 19 1 chrX 10971399 10972168 -151627762 + L1MA1 LINE L1 5520 6302 0 2808 150 28 78 chrX 10972168 10972266 -151627664 + LTR36 LTR ERV1 508 609 -2 1293 156 4 130 chrX 10972494 10972634 -151627296 + L1MB7 LINE L1 5733 5889 -295 17392 27 0 3 chrX 10972634 10975333 -151624597 + L1PA3 LINE L1 3457 6152 -3 1293 156 4 130 chrX 10975333 10975637 -151624293 + L1MB7 LINE L1 5889 6104 -80 302 235 141 0 chrX 10975884 10975969 -151623961 + MIR3 SINE MIR 82 178 -30 2037 211 45 5 chrX 10975995 10976417 -151623513 - MLT1C LTR MaLR -27 440 2 246 273 189 34 chrX 10977163 10977401 -151622529 + L2 LINE L2 2431 2705 -609 368 338 65 78 chrX 10977449 10977910 -151622020 + L2 LINE L2 2818 3272 0 2170 102 10 3 chrX 10978611 10978904 -151621026 + AluSq SINE Alu 1 295 -18 3126 167 13 9 chrX 10978910 10979454 -151620476 + MER68 LTR ERV1 17 562 0 192 40 0 0 chrX 10979462 10979487 -151620443 + (TC)n Simple_repeat Simple_repeat 2 26 0 382 216 0 36 chrX 10979624 10979791 -151620139 + CT-rich Low_complexity Low_complexity 4 164 0 18940 49 6 1 chrX 10980405 10983455 -151616475 - L1PA8 LINE L1 -8 6164 3105 2795 29 0 0 chrX 10984065 10984407 -151615523 - AluYa5 SINE Alu 0 342 1 296 282 70 106 chrX 10984418 10984691 -151615239 + L2 LINE L2 3005 3267 -46 1028 157 52 33 chrX 10984775 10984985 -151614945 - MER58 DNA MER1_type -126 215 2 276 30 0 0 chrX 10985311 10985344 -151614586 + (CA)n Simple_repeat Simple_repeat 2 34 0 3851 214 24 1 chrX 10986330 10987182 -151612748 - L1 LINE L1 -1282 4864 3994 1648 132 0 31 chrX 10987196 10987350 -151612580 - AluSx SINE Alu -24 288 144 444 37 0 0 chrX 10987350 10987404 -151612526 + (TG)n Simple_repeat Simple_repeat 2 55 0 1648 132 0 31 chrX 10987404 10987507 -151612423 - AluSx SINE Alu -168 144 39 955 209 4 53 chrX 10987607 10987851 -151612079 + L1MB3 LINE L1 5950 6181 -2 1090 288 104 32 chrX 10987907 10988656 -151611274 + L1M4 LINE L1 4471 5273 -873 201 256 0 0 chrX 10988891 10988930 -151611000 - L2 LINE L2 -20 3252 3214 1914 168 6 3 chrX 10989156 10989472 -151610458 + MER2 DNA MER2_type 28 344 -1 1756 172 84 3 chrX 10989871 10990254 -151609676 - Charlie1b DNA MER1_type -1 522 109 285 299 46 69 chrX 10990419 10990593 -151609337 + MER5A DNA MER1_type 2 171 -18 544 103 0 0 chrX 10990730 10990798 -151609132 - AluS SINE Alu -244 69 2 5517 126 57 32 chrX 10990802 10991818 -151608112 + MER4B-int LTR ERV1 3419 4459 -2139 1619 115 4 4 chrX 10991826 10992052 -151607878 - AluSg/x SINE Alu -14 296 71 2258 99 13 19 chrX 10992060 10992372 -151607558 + MER4A LTR ERV1 355 664 0 3931 144 49 68 chrX 10992858 10993031 -151606899 + MER4B-int LTR ERV1 1433 1608 -4990 2175 120 14 0 chrX 10993031 10993322 -151606608 - AluSx SINE Alu -17 295 1 3931 144 49 68 chrX 10993322 10994403 -151605527 + MER4B-int LTR ERV1 1608 2485 -4113 1017 68 83 0 chrX 10994408 10994540 -151605390 - AluSp/q SINE Alu -10 303 161 213 282 14 0 chrX 10995147 10995218 -151604712 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 234 0 0 0 chrX 10995381 10995407 -151604523 + (CA)n Simple_repeat Simple_repeat 2 27 0 3720 123 0 29 chrX 10995418 10995670 -151604260 + L1P LINE L1 3497 3755 -2391 1750 155 54 0 chrX 10995670 10995947 -151603983 + AluSx SINE Alu 1 292 -20 3720 123 0 29 chrX 10995947 10996288 -151603642 + L1P LINE L1 3755 4073 -2073 475 162 338 7 chrX 10996539 10996681 -151603249 - MER5A DNA MER1_type 0 189 1 359 256 144 0 chrX 10996867 10996992 -151602938 + MIR SINE MIR 108 250 -12 220 0 27 54 chrX 10997249 10997286 -151602644 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1920 164 0 10 chrX 10997305 10997617 -151602313 - AluJb SINE Alu -3 309 1 2417 224 36 18 chrX 10998073 10998675 -151601255 + L1MC4 LINE L1 7316 7928 -114 589 220 0 50 chrX 10998682 10998841 -151601089 + L1MC4 LINE L1 7892 8042 0 1486 224 97 84 chrX 10999256 11000116 -151599814 + L2 LINE L2 2284 3165 -148 4921 51 1 40 chrX 11000164 11000834 -151599096 + SVA Other Other 1 644 -742 229 83 0 125 chrX 11000934 11000982 -151598948 - Alu SINE Alu -68 65 24 628 64 0 0 chrX 11000997 11001075 -151598855 + LTR49 LTR ERV1 517 594 -1 362 246 133 74 chrX 11001075 11001278 -151598652 + MIR SINE MIR 47 261 -1 2130 141 0 3 chrX 11001609 11001915 -151598015 + AluJo SINE Alu 1 305 -7 2046 130 27 0 chrX 11002126 11002425 -151597505 + AluSx SINE Alu 1 307 -5 413 200 117 8 chrX 11002541 11002661 -151597269 + L1ME2 LINE L1 6023 6155 -9 237 234 16 16 chrX 11003108 11003172 -151596758 + CT-rich Low_complexity Low_complexity 1 64 0 288 0 0 0 chrX 11003251 11003283 -151596647 + (TG)n Simple_repeat Simple_repeat 2 33 0 2324 106 3 0 chrX 11003314 11003625 -151596305 + AluSx SINE Alu 1 312 0 828 140 78 39 chrX 11003688 11003867 -151596063 - MER53 DNA DNA -3 186 1 23 0 0 0 chrX 11005243 11005266 -151594664 + AT_rich Low_complexity Low_complexity 1 23 0 1600 90 202 101 chrX 11005515 11005882 -151594048 - MER4A LTR ERV1 -260 404 1 667 176 21 75 chrX 11006595 11006782 -151593148 - MER5B DNA MER1_type -1 177 1 748 150 105 46 chrX 11007616 11007769 -151592161 + MER63A DNA MER1_type 7 168 -42 271 280 25 63 chrX 11007884 11008036 -151591894 - MIR SINE MIR -50 212 66 1854 190 69 52 chrX 11008036 11008531 -151591399 + MLT1D LTR MaLR 3 505 0 271 280 25 63 chrX 11008531 11008561 -151591369 - MIR SINE MIR -196 66 36 209 206 14 82 chrX 11008550 11008623 -151591307 + L2 LINE L2 2997 3064 -208 * 227 241 145 0 chrX 11009400 11009483 -151590447 + MIR SINE MIR 61 155 -107 186 250 17 0 chrX 11009475 11009535 -151590395 - MIR SINE MIR 0 262 202 * 675 204 148 0 chrX 11009579 11009721 -151590209 - MER45A DNA AcHobo 0 178 16 2799 116 131 4 chrX 11010721 11011201 -151588729 + LTR49 LTR ERV1 2 736 -51 1321 71 0 0 chrX 11011212 11011367 -151588563 - AluSg/x SINE Alu -22 288 134 6134 31 1 1 chrX 11011471 11012148 -151587782 + SVA Other Other 709 1385 -1 426 256 66 44 chrX 11012168 11012305 -151587625 + L2 LINE L2 3173 3312 -1 2423 59 7 10 chrX 11012391 11012695 -151587235 - AluSq SINE Alu -10 303 1 985 251 102 91 chrX 11012957 11013508 -151586422 - MER21B LTR ERV1 -167 696 140 371 252 0 55 chrX 11013541 11013668 -151586262 - MER77 LTR ERV1 -420 185 66 207 0 0 0 chrX 11013887 11013910 -151586020 + (A)n Simple_repeat Simple_repeat 1 23 0 203 138 0 0 chrX 11014017 11014046 -151585884 + (CCA)n Simple_repeat Simple_repeat 1 29 0 281 292 31 45 chrX 11014282 11014436 -151585494 + MIR SINE MIR 42 191 -66 2405 45 0 14 chrX 11014773 11015088 -151584842 + AluY SINE Alu 1 311 0 1328 190 135 5 chrX 11015162 11015541 -151584389 + Charlie4a DNA MER1_type 25 452 -56 1710 137 68 34 chrX 11015554 11015876 -151584054 + MER1B DNA MER1_type 5 337 0 681 221 127 0 chrX 11016841 11016999 -151582931 - MER45A DNA AcHobo 0 178 1 2285 91 3 3 chrX 11017380 11017676 -151582254 + AluSc SINE Alu 14 309 0 976 113 0 0 chrX 11017885 11018018 -151581912 + FLAM_C SINE Alu 1 133 0 616 253 109 13 chrX 11018141 11018370 -151581560 + MIR SINE MIR 12 262 0 243 342 0 54 chrX 11018551 11018662 -151581268 + L3 LINE CR1 1460 1564 -13 336 221 39 0 chrX 11018899 11018976 -151580954 + MIR SINE MIR 93 172 -90 938 87 16 0 chrX 11019987 11020113 -151579817 + AluSg/x SINE Alu 174 301 -8 191 129 0 0 chrX 11020306 11020337 -151579593 + MIR SINE MIR 110 140 -68 42 48 0 0 chrX 11020491 11020554 -151579376 + AT_rich Low_complexity Low_complexity 1 63 0 471 242 152 0 chrX 11020662 11020827 -151579103 - MIR SINE MIR 0 262 73 1760 144 43 20 chrX 11027752 11028051 -151571879 - AluJb SINE Alu -6 306 1 2166 98 6 38 chrX 11028192 11028509 -151571421 - AluSx SINE Alu -5 307 1 1190 123 0 35 chrX 11029417 11029588 -151570342 - AluJb SINE Alu -16 296 132 265 274 24 0 chrX 11029598 11029682 -151570248 - L2 LINE L2 0 3272 3187 1444 220 137 39 chrX 11030290 11030750 -151569180 - MLT1D LTR MaLR 0 505 1 328 212 66 133 chrX 11032024 11032265 -151567665 - MER112 DNA MER1_type -8 252 28 286 309 22 14 chrX 11032552 11032691 -151567239 + MIR SINE MIR 75 214 -48 429 20 0 0 chrX 11032783 11032833 -151567097 + (TG)n Simple_repeat Simple_repeat 1 50 0 994 149 0 19 chrX 11032833 11032987 -151566943 - FRAM SINE Alu -33 143 1 3344 48 65 5 chrX 11032999 11033416 -151566514 + MLT2A1 LTR ERVL 1 442 -2 3036 214 84 23 chrX 11033825 11034642 -151565288 - L1MC4 LINE L1 -14 8028 7162 2305 118 0 0 chrX 11034654 11034958 -151564972 - AluSx SINE Alu -8 304 1 2245 111 3 0 chrX 11035622 11035919 -151564011 + AluSp SINE Alu 1 298 -15 1406 140 44 0 chrX 11036775 11037025 -151562905 - MER63 DNA MER1_type -33 1029 769 2821 104 33 19 chrX 11037051 11037405 -151562525 + MSTC LTR MaLR 1 363 -65 1392 167 61 64 chrX 11037405 11037716 -151562214 + AluJo SINE Alu 3 312 0 2821 104 33 19 chrX 11037716 11037783 -151562147 + MSTC LTR MaLR 363 428 0 1173 183 48 44 chrX 11038048 11038321 -151561609 + L1MD3 LINE L1 7310 7583 -412 3326 155 102 5 chrX 11038321 11038962 -151560968 - MER39 LTR ERV1 -9 644 1 1219 175 29 107 chrX 11038963 11039245 -151560685 + L1MD3 LINE L1 7577 7823 -172 2117 140 0 3 chrX 11039245 11039545 -151560385 - AluSx SINE Alu -13 299 1 1219 175 29 107 chrX 11039545 11039645 -151560285 + L1MD3 LINE L1 7823 7929 -66 194 253 0 13 chrX 11040648 11040727 -151559203 + (TA)n Simple_repeat Simple_repeat 1 78 0 199 128 0 43 chrX 11041280 11041327 -151558603 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 789 192 0 0 chrX 11041766 11041891 -151558039 + FLAM_A SINE Alu 1 125 -8 22 0 0 0 chrX 11041891 11041913 -151558017 + AT_rich Low_complexity Low_complexity 1 22 0 1164 231 62 53 chrX 11042236 11042396 -151557534 + MER58B DNA MER1_type 1 158 -2262 4102 88 11 0 chrX 11042396 11042942 -151556988 + L1PA13 LINE L1 5612 6163 0 1164 231 62 53 chrX 11042942 11043119 -151556811 + MER58B DNA MER1_type 158 341 0 1203 200 60 12 chrX 11043963 11044422 -151555508 - MLT1E1 LTR MaLR -4 650 109 480 281 34 92 chrX 11044507 11044745 -151555185 + MIR SINE MIR 36 259 -3 214 302 0 0 chrX 11046275 11046328 -151553602 - L2 LINE L2 -1 3271 3219 1765 160 0 0 chrX 11048416 11048679 -151551251 - AluJb SINE Alu -45 267 5 6058 96 54 3 chrX 11048684 11049574 -151550356 + Tigger3b DNA MER2_type 295 1229 -2 22 35 0 0 chrX 11049896 11049925 -151550005 + AT_rich Low_complexity Low_complexity 1 29 0 2165 130 0 0 chrX 11050353 11050654 -151549276 - AluSx SINE Alu -11 301 1 2397 87 0 3 chrX 11050980 11051280 -151548650 - AluSg SINE Alu -11 299 1 2544 75 0 0 chrX 11051297 11051605 -151548325 - AluSg SINE Alu -2 308 1 333 212 76 0 chrX 11052554 11052620 -151547310 + MIR SINE MIR 74 144 -64 345 85 0 0 chrX 11052624 11052671 -151547259 - MADE1 DNA Mariner 0 80 34 468 80 23 34 chrX 11053071 11053159 -151546771 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 260 250 114 71 chrX 11054192 11054332 -151545598 - L2 LINE L2 -102 3211 3066 399 246 49 28 chrX 11054360 11054502 -151545428 - MIR3 SINE MIR -49 159 15 486 268 225 0 chrX 11054783 11054925 -151545005 - MER5A DNA MER1_type -7 182 9 2358 70 3 3 chrX 11056710 11057011 -151542919 - AluY SINE Alu -10 301 1 1326 202 27 0 chrX 11057229 11057487 -151542443 - L1MD3 LINE L1 -2 7993 7729 238 274 69 39 chrX 11057533 11057635 -151542295 - L2 LINE L2 -6 3266 3162 877 146 0 0 chrX 11058859 11058982 -151540948 + FLAM_C SINE Alu 1 123 -20 192 77 0 0 chrX 11058982 11059008 -151540922 + (TAA)n Simple_repeat Simple_repeat 2 27 0 311 325 78 36 chrX 11059008 11059174 -151540756 + MIR SINE MIR 90 262 0 1609 208 13 92 chrX 11059355 11059754 -151540176 + MLT1D LTR MaLR 68 497 -8 2281 105 3 0 chrX 11059754 11060058 -151539872 + AluSq SINE Alu 1 305 -8 1493 120 10 0 chrX 11060066 11060274 -151539656 + L1PA15 LINE L1 5950 6159 -6 1609 208 13 92 chrX 11060274 11060341 -151539589 + MLT1D LTR MaLR 434 505 0 773 279 28 5 chrX 11061677 11061892 -151538038 + MIR SINE MIR 40 259 -3 25 0 0 0 chrX 11062190 11062215 -151537715 + AT_rich Low_complexity Low_complexity 1 25 0 2469 82 0 0 chrX 11062260 11062563 -151537367 + AluSg SINE Alu 1 303 -7 201 277 44 66 chrX 11062747 11062884 -151537046 + L2 LINE L2 3170 3303 -10 3018 125 7 2 chrX 11063726 11064157 -151535773 + MER57B LTR ERV1 2 434 0 198 302 79 0 chrX 11064259 11064322 -151535608 + MIR3 SINE MIR 127 194 -14 517 335 57 1 chrX 11064355 11064575 -151535355 + MIR SINE MIR 15 245 -17 180 0 0 0 chrX 11064584 11064604 -151535326 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1369 170 4 48 chrX 11064712 11064983 -151534947 + AluJb SINE Alu 1 259 -53 1978 137 10 10 chrX 11065167 11065466 -151534464 - AluSq SINE Alu -14 299 1 41321 73 3 2 chrX 11065599 11071735 -151528195 - L1PA7 LINE L1 -15 6139 3 2200 116 0 3 chrX 11071826 11072129 -151527801 + AluSg SINE Alu 1 302 -8 434 188 20 30 chrX 11072378 11072479 -151527451 - MER20B DNA MER1_type -2 781 682 404 289 19 13 chrX 11072532 11072688 -151527242 - L1M4 LINE L1 -1500 4646 4490 798 241 105 8 chrX 11072698 11073129 -151526801 - LTR33 LTR ERVL -9 512 14 491 306 33 0 chrX 11073376 11073559 -151526371 + MIR SINE MIR 74 262 0 1183 178 84 0 chrX 11073937 11074139 -151525791 + MER20 DNA MER1_type 1 219 0 24 32 0 0 chrX 11074521 11074552 -151525378 + AT_rich Low_complexity Low_complexity 1 31 0 241 333 0 70 chrX 11075304 11075319 -151524611 + MIR SINE MIR 47 61 -201 2047 153 80 49 chrX 11075319 11075771 -151524159 - MER31B LTR ERV1 0 466 1 241 333 0 70 chrX 11075771 11075911 -151524019 + MIR SINE MIR 61 191 -71 579 243 43 102 chrX 11076591 11076649 -151523281 + L1ME4a LINE L1 5610 5670 -451 3194 67 15 0 chrX 11076649 11077051 -151522879 + L1PA10 LINE L1 5760 6167 -1 579 243 43 102 chrX 11077051 11077297 -151522633 + L1ME4a LINE L1 5670 5896 -225 274 308 29 0 chrX 11077434 11077538 -151522392 - MIR SINE MIR -107 155 49 1076 203 98 67 chrX 11077888 11078204 -151521726 + MER58B DNA MER1_type 3 328 -13 714 218 184 49 chrX 11079472 11079820 -151520110 - MLT1G LTR MaLR 0 590 196 246 156 0 0 chrX 11079823 11079868 -151520062 + GA-rich Low_complexity Low_complexity 1 45 0 233 221 128 12 chrX 11079913 11079999 -151519931 + L2 LINE L2 1737 1832 -1482 1347 307 48 13 chrX 11080013 11080786 -151519144 + L2 LINE L2 2507 3305 -8 315 313 59 84 chrX 11080957 11081280 -151518650 - L1ME4a LINE L1 -89 6032 5718 2111 109 0 0 chrX 11081330 11081635 -151518295 + AluSx SINE Alu 1 305 0 223 326 11 21 chrX 11081848 11081943 -151517987 - MIR3 SINE MIR -1 207 114 387 237 52 21 chrX 11082605 11082702 -151517228 + L2 LINE L2 3170 3269 -3 3029 85 0 3 chrX 11082790 11083155 -151516775 + THE1B LTR MaLR 1 364 0 2185 120 3 0 chrX 11083250 11083551 -151516379 - AluSx SINE Alu -10 302 1 255 212 136 68 chrX 11083782 11083914 -151516016 + MIR SINE MIR 108 248 -14 343 202 0 140 chrX 11084570 11084684 -151515246 + MER58 DNA MER1_type 1 98 -243 207 272 109 11 chrX 11085232 11085324 -151514606 - L2 LINE L2 -5 3308 3208 509 176 133 66 chrX 11085573 11085783 -151514147 + MER58 DNA MER1_type 1 2415 -5 833 196 101 6 chrX 11085797 11085965 -151513965 + MER3 DNA MER1_type 1 184 -25 1033 267 44 85 chrX 11086658 11087186 -151512744 - MLT1J LTR MaLR 0 511 6 242 258 101 22 chrX 11087378 11087467 -151512463 + L2 LINE L2 3137 3232 -40 368 256 136 42 chrX 11087972 11088163 -151511767 - L2 LINE L2 0 3313 3105 376 61 0 0 chrX 11088183 11088232 -151511698 + MIR SINE MIR 107 155 -107 2201 109 0 0 chrX 11088239 11088566 -151511364 + AluSq SINE Alu 1 327 0 235 193 101 118 chrX 11088567 11088686 -151511244 + MER46C DNA MER2_type 19 135 -203 49 107 0 0 chrX 11088686 11088882 -151511048 + AT_rich Low_complexity Low_complexity 1 196 0 1015 199 44 22 chrX 11088882 11089108 -151510822 + MER46C DNA MER2_type 108 338 0 401 247 22 0 chrX 11089117 11089206 -151510724 + MIR SINE MIR 172 262 0 710 320 76 12 chrX 11089240 11089729 -151510201 - L2 LINE L2 -245 3068 2544 529 134 116 71 chrX 11089877 11089989 -151509941 - MER63 DNA MER1_type -319 743 1 190 325 13 26 chrX 11090741 11090818 -151509112 - L2 LINE L2 -475 2839 2764 488 173 0 0 chrX 11090839 11090914 -151509016 + AluJ/FLAM SINE Alu 2 76 -236 1790 151 10 10 chrX 11091283 11091581 -151508349 - AluJo SINE Alu -12 300 3 449 254 59 0 chrX 11091937 11092055 -151507875 - MER94 DNA DNA -8 126 2 316 244 52 0 chrX 11092266 11092351 -151507579 + MIR SINE MIR 68 157 -51 2388 84 7 0 chrX 11096421 11096729 -151503201 + AluSg SINE Alu 1 310 0 1737 97 4 0 chrX 11099104 11099332 -151500598 + AluSg/x SINE Alu 83 311 -1 235 208 62 115 chrX 11100953 11101083 -151498847 - MIR SINE MIR -49 213 91 236 220 0 34 chrX 11102346 11102405 -151497525 - L1MC4 LINE L1 -1339 6703 6647 28 86 0 0 chrX 11102531 11102601 -151497329 + AT_rich Low_complexity Low_complexity 1 70 0 2347 100 3 0 chrX 11102630 11102931 -151496999 - AluSx SINE Alu -10 302 1 366 107 0 0 chrX 11103830 11103886 -151496044 + (TA)n Simple_repeat Simple_repeat 2 57 0 207 307 0 27 chrX 11103888 11103963 -151495967 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 180 0 0 0 chrX 11103965 11103985 -151495945 + (TG)n Simple_repeat Simple_repeat 1 20 0 205 188 0 0 chrX 11104680 11104712 -151495218 - L2 LINE L2 -81 3232 3201 2018 116 41 7 chrX 11104734 11105026 -151494904 + AluSx SINE Alu 1 302 -10 408 40 0 0 chrX 11105154 11105204 -151494726 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 391 301 9 9 chrX 11105213 11105326 -151494604 - L2 LINE L2 -2 3270 3158 330 317 33 39 chrX 11105494 11105674 -151494256 - L2 LINE L2 -901 2413 2235 539 210 0 0 chrX 11105725 11105825 -151494105 + MER5A DNA MER1_type 9 108 -81 1218 184 121 18 chrX 11105947 11106219 -151493711 - AluJo SINE Alu -12 300 1 862 201 29 6 chrX 11106257 11106431 -151493499 - MER5B DNA MER1_type 0 178 1 822 179 19 26 chrX 11106458 11106614 -151493316 - MER5A DNA MER1_type -4 185 31 220 383 109 34 chrX 11106620 11106795 -151493135 - MER5A DNA MER1_type -1 188 1 605 124 21 10 chrX 11107334 11107431 -151492499 + MER4A LTR ERV1 1 98 -566 1908 120 174 23 chrX 11107431 11107782 -151492148 + MER4A LTR ERV1 261 664 0 2473 37 41 0 chrX 11108266 11108561 -151491369 + AluY SINE Alu 2 308 -3 1803 122 20 0 chrX 11108603 11108889 -151491041 + AluJo SINE Alu 26 316 0 499 299 91 32 chrX 11109775 11110180 -151489750 + L1ME4a LINE L1 5690 6118 -3 236 54 54 0 chrX 11110250 11110287 -151489643 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 306 248 167 0 chrX 11110395 11110517 -151489413 + MIR SINE MIR 16 154 -62 3894 96 46 4 chrX 11111264 11111826 -151488104 + Tigger3(Golem) DNA MER2_type 2443 3028 -1 22 35 0 0 chrX 11112147 11112176 -151487754 + AT_rich Low_complexity Low_complexity 1 29 0 2165 130 0 0 chrX 11112604 11112905 -151487025 - AluSx SINE Alu -11 301 1 2388 87 0 3 chrX 11113231 11113530 -151486400 - AluSg SINE Alu -12 298 1 2518 75 0 0 chrX 11113547 11113852 -151486078 - AluSg SINE Alu -5 305 1 333 212 76 0 chrX 11114801 11114867 -151485063 + MIR SINE MIR 74 144 -64 345 85 0 0 chrX 11114871 11114918 -151485012 - MADE1 DNA Mariner 0 80 34 432 83 24 36 chrX 11115318 11115402 -151484528 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 260 250 114 71 chrX 11116435 11116575 -151483355 - L2 LINE L2 -102 3211 3066 399 246 49 28 chrX 11116603 11116745 -151483185 - MIR3 SINE MIR -49 159 15 486 268 225 0 chrX 11117026 11117168 -151482762 - MER5A DNA MER1_type -7 182 9 2358 70 3 3 chrX 11118953 11119254 -151480676 - AluY SINE Alu -10 301 1 1326 202 27 0 chrX 11119472 11119730 -151480200 - L1MD3 LINE L1 -2 7993 7729 238 274 69 39 chrX 11119776 11119878 -151480052 - L2 LINE L2 -6 3266 3162 877 146 0 0 chrX 11121102 11121225 -151478705 + FLAM_C SINE Alu 1 123 -20 192 77 0 0 chrX 11121225 11121251 -151478679 + (TAA)n Simple_repeat Simple_repeat 2 27 0 311 325 78 36 chrX 11121251 11121417 -151478513 + MIR SINE MIR 90 262 0 1609 208 13 92 chrX 11121598 11121997 -151477933 + MLT1D LTR MaLR 68 497 -8 2281 105 3 0 chrX 11121997 11122301 -151477629 + AluSq SINE Alu 1 305 -8 1493 120 10 0 chrX 11122309 11122517 -151477413 + L1PA15 LINE L1 5950 6159 -6 1609 208 13 92 chrX 11122517 11122584 -151477346 + MLT1D LTR MaLR 434 505 0 773 279 28 5 chrX 11123920 11124135 -151475795 + MIR SINE MIR 40 259 -3 25 0 0 0 chrX 11124433 11124458 -151475472 + AT_rich Low_complexity Low_complexity 1 25 0 2461 83 0 0 chrX 11124503 11124805 -151475125 + AluSg SINE Alu 1 302 -8 201 277 44 66 chrX 11124989 11125126 -151474804 + L2 LINE L2 3170 3303 -10 3018 125 7 2 chrX 11125968 11126399 -151473531 + MER57B LTR ERV1 2 434 0 198 302 79 0 chrX 11126501 11126564 -151473366 + MIR3 SINE MIR 127 194 -14 517 335 57 1 chrX 11126597 11126817 -151473113 + MIR SINE MIR 15 245 -17 180 0 0 0 chrX 11126826 11126846 -151473084 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1686 167 3 40 chrX 11126954 11127277 -151472653 + AluJb SINE Alu 1 311 -1 2002 118 0 0 chrX 11127701 11127972 -151471958 - AluSx SINE Alu -41 271 1 330 257 86 9 chrX 11128021 11128126 -151471804 - MIR SINE MIR -62 200 88 1736 153 22 32 chrX 11128565 11128878 -151471052 + AluJo SINE Alu 1 310 -2 1882 168 0 22 chrX 11129597 11129912 -151470018 + AluJo SINE Alu 2 309 -3 2119 127 3 22 chrX 11130522 11130837 -151469093 + AluSx SINE Alu 1 309 -3 385 250 80 46 chrX 11130881 11131076 -151468854 - L1ME LINE L1 -410 5711 5522 269 238 125 12 chrX 11131386 11131466 -151468464 + MIR3 SINE MIR 118 206 -2 1706 158 14 0 chrX 11131543 11131821 -151468109 - AluJo SINE Alu -30 282 1 442 194 48 48 chrX 11131849 11131973 -151467957 - MIR SINE MIR -74 188 65 1003 171 6 0 chrX 11132774 11132944 -151466986 - FRAM SINE Alu -2 174 4 330 305 133 17 chrX 11132949 11133182 -151466748 - L2 LINE L2 -343 2971 2712 2362 62 23 13 chrX 11133935 11134242 -151465688 - AluY SINE Alu 0 311 2 375 23 0 0 chrX 11135416 11135460 -151464470 + (GA)n Simple_repeat Simple_repeat 1 44 0 1346 247 29 18 chrX 11137341 11137725 -151462205 - L1ME1 LINE L1 -5 6161 5771 570 240 72 50 chrX 11137917 11138138 -151461792 - L2 LINE L2 0 3313 3088 229 208 21 0 chrX 11139155 11139203 -151460727 - MIR3 SINE MIR -30 178 130 231 118 0 0 chrX 11139332 11139366 -151460564 + L1ME1 LINE L1 6123 6156 -10 2297 96 3 3 chrX 11140716 11141019 -151458911 - AluSx SINE Alu -9 303 1 1859 143 66 9 chrX 11142107 11142442 -151457488 + L1MA4 LINE L1 5941 6294 -6 242 318 95 16 chrX 11142461 11142587 -151457343 - MIR SINE MIR -2 260 125 1162 169 19 0 chrX 11143447 11143654 -151456276 + L1MC1 LINE L1 6113 6323 -10 224 210 0 16 chrX 11143654 11143716 -151456214 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 267 173 0 0 chrX 11143742 11143794 -151456136 + (CA)n Simple_repeat Simple_repeat 2 53 0 237 200 18 0 chrX 11144488 11144543 -151455387 + PABL_A LTR ERV1 422 477 -183 581 246 56 6 chrX 11148177 11148356 -151451574 + L2 LINE L2 663 850 -2464 557 293 39 6 chrX 11148427 11148608 -151451322 - MIR SINE MIR -68 194 8 460 267 193 41 chrX 11148638 11149001 -151450929 + L2 LINE L2 872 1289 -2025 2486 60 3 0 chrX 11150495 11150794 -151449136 - AluY SINE Alu -11 300 1 1541 133 4 0 chrX 11151680 11151906 -151448024 + L1PA15 LINE L1 5935 6161 -4 1958 147 6 13 chrX 11154536 11154713 -151445217 - AluJb SINE Alu 0 312 136 2024 115 6 43 chrX 11154713 11155035 -151444895 - AluSx SINE Alu -2 310 1 1958 147 6 13 chrX 11155035 11155171 -151444759 - AluJb SINE Alu -176 136 1 263 222 42 62 chrX 11156327 11156471 -151443459 + L1MC5 LINE L1 7784 7924 -37 305 358 101 28 chrX 11156855 11157073 -151442857 + L2 LINE L2 3027 3260 -12 484 314 18 0 chrX 11157183 11157352 -151442578 - MER5B DNA MER1_type 0 178 7 1302 140 14 14 chrX 11157470 11157684 -151442246 + MER20 DNA MER1_type 6 219 0 297 271 14 0 chrX 11158435 11158505 -151441425 + L2 LINE L2 3202 3272 0 392 194 223 109 chrX 11158892 11159139 -151440791 - ORSL DNA AcHobo 0 275 1 2201 132 3 0 chrX 11159199 11159510 -151440420 - AluSx SINE Alu 0 312 1 187 368 0 0 chrX 11159702 11159770 -151440160 - L2 LINE L2 -836 2478 2411 2304 105 3 0 chrX 11160133 11160437 -151439493 + AluSp SINE Alu 1 305 -8 1197 215 9 5 chrX 11160619 11160842 -151439088 + MER58A DNA MER1_type 1 224 0 1836 143 3 17 chrX 11162847 11163164 -151436766 - AluSx SINE Alu 0 313 1 28 29 0 0 chrX 11163678 11163713 -151436217 + AT_rich Low_complexity Low_complexity 1 35 0 551 277 148 61 chrX 11163905 11164284 -151435646 - L1MC4a LINE L1 -1875 5933 5522 183 156 0 0 chrX 11164370 11164402 -151435528 + CT-rich Low_complexity Low_complexity 2 33 0 256 277 0 60 chrX 11165065 11165148 -151434782 - LTR67 LTR ERVL -377 180 103 487 225 129 66 chrX 11166310 11166375 -151433555 + L1MC5 LINE L1 7654 7713 -248 1370 140 33 9 chrX 11166375 11166589 -151433341 - MER20 DNA MER1_type 0 219 1 487 225 129 66 chrX 11166589 11166794 -151433136 + L1MC5 LINE L1 7713 7941 -20 727 280 36 40 chrX 11167664 11167914 -151432016 + MIR SINE MIR 14 262 0 498 311 34 17 chrX 11168782 11168959 -151430971 + MER5A DNA MER1_type 5 184 -5 854 158 0 0 chrX 11169416 11169536 -151430394 + FLAM_C SINE Alu 1 120 -13 204 40 0 0 chrX 11169542 11169567 -151430363 + (TG)n Simple_repeat Simple_repeat 2 26 0 2637 78 50 31 chrX 11170570 11170927 -151429003 - THE1B LTR MaLR 0 364 1 12985 80 1 3 chrX 11170927 11172510 -151427420 - THE1B-int LTR MaLR 0 1580 1 2104 112 52 33 chrX 11172510 11172840 -151427090 - THE1B LTR MaLR 0 364 29 1563 153 108 28 chrX 11172952 11173240 -151426690 - AluJo SINE Alu 0 312 2 1849 174 0 0 chrX 11173251 11173545 -151426385 - AluJb SINE Alu -18 294 1 241 294 84 25 chrX 11173614 11173733 -151426197 + MIR SINE MIR 26 151 -111 275 297 136 8 chrX 11173969 11174087 -151425843 + L2 LINE L2 3136 3268 -4 274 326 70 8 chrX 11174331 11174460 -151425470 + L2 LINE L2 3136 3272 0 * 602 239 24 106 chrX 11174457 11174574 -151425356 - MIR SINE MIR 0 262 175 2076 117 0 3 chrX 11174574 11174881 -151425049 - AluSx SINE Alu 0 306 1 602 239 24 106 chrX 11174881 11175017 -151424913 - MIR SINE MIR -87 175 29 1428 188 48 72 chrX 11175025 11175295 -151424635 - Charlie1b DNA MER1_type -2238 523 267 1930 164 7 0 chrX 11175295 11175605 -151424325 - AluJo SINE Alu 0 312 1 1428 188 48 72 chrX 11175605 11175776 -151424154 - Charlie1b DNA MER1_type -2494 267 93 2294 108 0 3 chrX 11176755 11177061 -151422869 - AluSx SINE Alu -7 305 1 1997 149 0 7 chrX 11177522 11177844 -151422086 + AluJb SINE Alu 1 312 0 794 280 149 30 chrX 11177984 11178413 -151421517 + MLT1H1 LTR MaLR 68 547 -8 1962 152 0 13 chrX 11178772 11179087 -151420843 + AluSx SINE Alu 1 311 -1 385 129 14 43 chrX 11179245 11179315 -151420615 + MLT1G LTR MaLR 223 290 -300 1391 161 49 67 chrX 11180141 11180470 -151419460 + MER33 DNA MER1_type 1 323 -1 2226 50 0 0 chrX 11181308 11181567 -151418363 - AluY SINE Alu -13 298 40 219 167 0 0 chrX 11181567 11181609 -151418321 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2137 205 116 43 chrX 11182331 11182818 -151417112 + MLT1E LTR MaLR 2 535 -58 1822 174 10 3 chrX 11182818 11183129 -151416801 + AluSq SINE Alu 1 313 0 2137 205 116 43 chrX 11183129 11183193 -151416737 + MLT1E LTR MaLR 535 593 0 313 179 265 8 chrX 11183252 11183369 -151416561 - MER5C DNA MER1_type -6 318 172 447 217 181 12 chrX 11183392 11183558 -151416372 - MER5C DNA MER1_type -92 232 39 438 339 44 22 chrX 11183608 11183835 -151416095 - MIR SINE MIR 0 262 31 594 260 13 20 chrX 11184237 11184387 -151415543 - MER5B DNA MER1_type -24 154 6 450 249 148 47 chrX 11185013 11185182 -151414748 + MER5A DNA MER1_type 4 189 0 434 226 83 15 chrX 11185186 11185319 -151414611 - MER103 DNA DNA -20 146 5 484 251 43 59 chrX 11185344 11185396 -151414534 - L1ME3A LINE L1 -1 6169 6118 2914 202 8 8 chrX 11185396 11185915 -151414015 + LTR40a LTR ERVL 1 519 0 484 251 43 59 chrX 11185915 11186049 -151413881 - L1ME3A LINE L1 -52 6118 5986 684 261 101 10 chrX 11186114 11186321 -151413609 - MIR SINE MIR -6 256 31 2301 89 0 35 chrX 11186322 11186637 -151413293 - AluSq SINE Alu -9 304 1 565 310 26 0 chrX 11186856 11187011 -151412919 + MIR3 SINE MIR 45 203 -5 215 31 31 0 chrX 11187258 11187290 -151412640 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 240 111 0 0 chrX 11187351 11187387 -151412543 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 300 332 135 31 chrX 11187388 11187713 -151412217 - L2 LINE L2 0 3272 2914 2090 97 20 23 chrX 11188910 11189210 -151410720 - AluSg1 SINE Alu -10 299 1 658 229 98 71 chrX 11189588 11189633 -151410297 + L2 LINE L2 2701 2743 -570 2673 152 52 7 chrX 11189633 11190093 -151409837 + L1MB5 LINE L1 5694 6174 0 658 229 98 71 chrX 11190093 11190516 -151409414 + L2 LINE L2 2743 3189 -124 729 175 114 81 chrX 11192185 11192396 -151407534 + MER20 DNA MER1_type 1 218 -1 1844 140 0 14 chrX 11192826 11193105 -151406825 + AluSx SINE Alu 1 275 -37 5277 80 6 3 chrX 11193105 11193746 -151406184 - LTR9B LTR ERV1 -1 643 1 249 57 0 0 chrX 11193758 11193793 -151406137 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 307 274 230 22 chrX 11194041 11194176 -151405754 + MIR3 SINE MIR 21 183 -25 2069 91 4 0 chrX 11194573 11194837 -151405093 - AluSp SINE Alu -10 303 39 229 25 0 50 chrX 11195663 11195703 -151404227 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2187 82 4 0 chrX 11196242 11196510 -151403420 - AluSp SINE Alu -16 297 29 1742 177 7 13 chrX 11198004 11198303 -151401627 + AluJb SINE Alu 1 297 -15 21 36 0 0 chrX 11198385 11198413 -151401517 + AT_rich Low_complexity Low_complexity 1 28 0 742 286 49 53 chrX 11198414 11198698 -151401232 - L1ME4a LINE L1 -16 6105 5822 2359 82 0 16 chrX 11198698 11199001 -151400929 - AluSg SINE Alu -12 298 1 742 286 49 53 chrX 11199001 11199285 -151400645 - L1ME4a LINE L1 -299 5822 5539 586 269 52 24 chrX 11201197 11201409 -151398521 - MIR SINE MIR -42 220 3 987 137 0 46 chrX 11201823 11201998 -151397932 + MER20 DNA MER1_type 1 167 -52 2083 174 119 30 chrX 11202294 11202755 -151397175 + MLT1D LTR MaLR 1 502 -3 188 297 33 44 chrX 11203171 11203262 -151396668 + L2 LINE L2 3206 3295 -18 2684 187 27 32 chrX 11203409 11204003 -151395927 - L1ME3 LINE L1 0 6162 5572 209 195 0 0 chrX 11205113 11205154 -151394776 + T-rich Low_complexity Low_complexity 2 42 0 2341 96 0 19 chrX 11205597 11205909 -151394021 - AluSg1 SINE Alu -3 306 1 180 0 0 0 chrX 11206042 11206062 -151393868 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2861 200 59 15 chrX 11206071 11206737 -151393193 - L1ME1 LINE L1 -5 6161 5467 856 155 0 0 chrX 11206779 11206908 -151393022 + FRAM SINE Alu 25 153 -23 639 182 51 132 chrX 11206930 11207255 -151392675 - L1ME1 LINE L1 -694 5472 5177 1149 179 6 35 chrX 11207386 11207709 -151392221 + MLT1A1 LTR MaLR 1 365 0 487 320 11 17 chrX 11207759 11207937 -151391993 - MER5A DNA MER1_type -6 183 7 835 134 0 24 chrX 11208276 11208403 -151391527 + FLAM_C SINE Alu 9 132 -11 3687 155 102 23 chrX 11208716 11209445 -151390485 - LTR48 LTR ERV1 0 787 2 459 249 102 69 chrX 11210167 11210472 -151389458 - L1ME4a LINE L1 -17 6104 5790 475 264 289 0 chrX 11210485 11210686 -151389244 - MIR SINE MIR -2 260 2 203 0 37 0 chrX 11211843 11211870 -151388060 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 359 317 0 25 chrX 11212352 11212472 -151387458 - L2 LINE L2 0 3313 3197 1636 181 21 9 chrX 11212505 11212831 -151387099 + L1MB7 LINE L1 5290 5619 -565 3583 135 24 24 chrX 11212835 11213419 -151386511 - MER41B LTR ERV1 -48 587 4 3249 157 23 14 chrX 11213419 11213975 -151385955 + L1MB7 LINE L1 5613 6173 -11 214 230 37 118 chrX 11214002 11214137 -151385793 - L2 LINE L2 -358 2955 2832 2013 128 0 0 chrX 11214959 11215233 -151384697 - AluSx SINE Alu -38 274 1 29 0 0 0 chrX 11215428 11215457 -151384473 + GC_rich Low_complexity Low_complexity 1 29 0 272 275 79 62 chrX 11215729 11215907 -151384023 - L1P4 LINE L1 -568 5597 5417 1565 170 0 8 chrX 11215910 11216175 -151383755 - AluJb SINE Alu -11 301 39 3122 150 46 28 chrX 11216491 11216919 -151383011 + L1MB4 LINE L1 5604 6046 -134 1965 148 34 0 chrX 11216919 11217216 -151382714 - AluSx SINE Alu -5 307 1 3122 150 46 28 chrX 11217216 11217352 -151382578 + L1MB4 LINE L1 6046 6178 -2 440 254 137 50 chrX 11217446 11217943 -151381987 - L1M4 LINE L1 -2685 3461 2922 1659 141 160 10 chrX 11218274 11218586 -151381344 + MSTA LTR MaLR 1 359 -69 657 86 0 0 chrX 11218586 11218679 -151381251 - L1M3 LINE L1 -500 5680 5588 2430 93 0 0 chrX 11218705 11219015 -151380915 - AluSg SINE Alu 0 310 1 818 129 0 168 chrX 11219323 11219525 -151380405 + MER45A DNA AcHobo 1 168 -10 261 0 0 0 chrX 11220856 11220885 -151379045 + (A)n Simple_repeat Simple_repeat 1 29 0 389 306 19 64 chrX 11221307 11221464 -151378466 + L2 LINE L2 3116 3265 -7 637 282 72 0 chrX 11221531 11221712 -151378218 + MIR SINE MIR 3 196 -66 25 31 0 0 chrX 11221837 11221869 -151378061 + AT_rich Low_complexity Low_complexity 1 32 0 2337 102 10 0 chrX 11222209 11222513 -151377417 - AluSx SINE Alu -5 307 1 782 151 27 62 chrX 11223075 11223221 -151376709 + FLAM_C SINE Alu 2 142 -1 2067 144 0 3 chrX 11223390 11223688 -151376242 + AluSx SINE Alu 1 297 -15 1288 163 13 13 chrX 11223782 11224015 -151375915 + MER65C LTR ERV1 1 233 -228 2537 147 45 2 chrX 11224015 11224417 -151375513 - MSTB LTR MaLR 0 426 8 1480 112 8 33 chrX 11224420 11224661 -151375269 + MER65C LTR ERV1 227 461 0 2088 132 10 10 chrX 11225567 11225878 -151374052 - AluJb SINE Alu -1 311 1 267 372 34 34 chrX 11226003 11226151 -151373779 + L2 LINE L2 3125 3272 0 361 291 34 8 chrX 11226189 11226306 -151373624 - L2 LINE L2 -2 3311 3192 3268 112 42 15 chrX 11226615 11227553 -151372377 - MER11C LTR ERVK 0 1071 1 389 86 17 0 chrX 11228069 11228127 -151371803 + L1PA6 LINE L1 6093 6151 -3 1054 164 13 69 chrX 11229807 11230039 -151369891 - MER20 DNA MER1_type 0 219 1 249 21 43 43 chrX 11230227 11230274 -151369656 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 863 213 4 101 chrX 11230314 11230591 -151369339 + MIR SINE MIR 7 256 -6 387 336 18 21 chrX 11231157 11231400 -151368530 + MIR SINE MIR 20 260 -2 1552 160 132 21 chrX 11231512 11231837 -151368093 + MLT1A1 LTR MaLR 5 365 0 259 286 63 48 chrX 11231847 11231973 -151367957 - MIR SINE MIR -62 146 19 494 274 153 6 chrX 11231978 11232135 -151367795 - MER5A DNA MER1_type 0 189 10 2076 153 12 21 chrX 11232911 11233250 -151366680 - MER58B DNA MER1_type -1 340 5 1695 126 67 22 chrX 11235211 11235514 -151364416 - AluSg SINE Alu 0 315 1 1140 138 40 62 chrX 11235872 11236096 -151363834 - MER20 DNA MER1_type 0 219 1 381 297 45 0 chrX 11236927 11237038 -151362892 - L2 LINE L2 -1 3312 3197 935 99 7 0 chrX 11238093 11238234 -151361696 + (TA)n Simple_repeat Simple_repeat 2 143 0 2594 68 0 3 chrX 11238234 11238544 -151361386 - AluY SINE Alu -2 309 1 212 175 0 25 chrX 11239543 11239583 -151360347 + (CA)n Simple_repeat Simple_repeat 2 40 0 3886 138 87 43 chrX 11240316 11240633 -151359297 - MER4-int LTR ERV1 -4794 1804 1502 186 43 0 0 chrX 11240633 11240656 -151359274 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3886 138 87 43 chrX 11240656 11240975 -151358955 - MER4-int LTR ERV1 -5096 1502 1198 369 0 0 0 chrX 11240975 11241016 -151358914 + (CA)n Simple_repeat Simple_repeat 2 42 0 3886 138 87 43 chrX 11241016 11241279 -151358651 - MER4-int LTR ERV1 -5400 1198 865 230 192 19 39 chrX 11241279 11241331 -151358599 - LTR49 LTR ERV1 -282 313 263 450 70 9 49 chrX 11241392 11241507 -151358423 - MER4-int LTR ERV1 -5769 829 654 2905 82 95 7 chrX 11241507 11241919 -151358011 + LTR7 LTR ERV1 1 448 -2 20459 86 31 21 chrX 11241921 11244876 -151355054 + HERVH LTR ERV1 1 2987 -4726 946 128 20 0 chrX 11244870 11245018 -151354912 + HERVH LTR ERV1 3140 3290 -4423 * 3347 110 10 6 chrX 11245008 11245508 -151354422 + HERVH LTR ERV1 3492 3993 -3720 4426 141 0 6 chrX 11245510 11246176 -151353754 + HERVH LTR ERV1 4488 5149 -2564 1417 130 19 0 chrX 11246177 11246393 -151353537 + HERVH LTR ERV1 5600 5819 -1894 2471 85 50 13 chrX 11246393 11246769 -151353161 + HERVH LTR ERV1 7324 7713 0 2924 85 95 5 chrX 11246769 11247180 -151352750 + LTR7 LTR ERV1 1 448 -2 224 181 0 34 chrX 11247188 11247255 -151352675 + A-rich Low_complexity Low_complexity 1 64 0 690 286 49 53 chrX 11448811 11449095 -151150835 + L1ME4a LINE L1 5539 5822 -299 2384 82 0 16 chrX 11449095 11449398 -151150532 + AluSg SINE Alu 1 298 -12 690 286 49 53 chrX 11449398 11449682 -151150248 + L1ME4a LINE L1 5822 6105 -16 21 36 0 0 chrX 11449683 11449711 -151150219 + AT_rich Low_complexity Low_complexity 1 28 0 1759 177 7 13 chrX 11449793 11450092 -151149838 - AluJb SINE Alu -15 297 1 2205 82 4 0 chrX 11451585 11451853 -151148077 + AluSp SINE Alu 29 297 -16 229 25 0 50 chrX 11452392 11452432 -151147498 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2084 91 4 0 chrX 11453258 11453522 -151146408 + AluSp SINE Alu 39 303 -10 264 274 230 22 chrX 11453919 11454054 -151145876 - MIR3 SINE MIR -25 183 21 249 57 0 0 chrX 11454302 11454337 -151145593 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 4989 83 6 3 chrX 11454349 11454990 -151144940 + LTR9B LTR ERV1 1 643 -1 1862 140 0 14 chrX 11454990 11455269 -151144661 - AluSx SINE Alu -37 275 1 670 175 114 81 chrX 11455699 11455910 -151144020 - MER20 DNA MER1_type -1 218 1 572 235 95 68 chrX 11457579 11458002 -151141928 - L2 LINE L2 -124 3189 2743 2540 152 52 7 chrX 11458002 11458462 -151141468 - L1MB5 LINE L1 0 6174 5694 572 235 95 68 chrX 11458462 11458507 -151141423 - L2 LINE L2 -570 2743 2701 2106 97 20 23 chrX 11458885 11459185 -151140745 + AluSg1 SINE Alu 1 299 -10 235 310 41 35 chrX 11460382 11460527 -151139403 + L2 LINE L2 2914 3059 -213 214 295 13 51 chrX 11460629 11460707 -151139223 + L2 LINE L2 3239 3313 0 240 111 0 0 chrX 11460708 11460744 -151139186 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 215 31 31 0 chrX 11460805 11460837 -151139093 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 383 297 27 14 chrX 11461084 11461232 -151138698 - MIR3 SINE MIR -5 203 54 302 289 63 7 chrX 11461687 11461829 -151138101 + L1ME4a LINE L1 5971 6120 -1 2082 144 0 3 chrX 11461838 11462136 -151137794 + AluSx SINE Alu 1 297 -15 2647 136 11 44 chrX 11462230 11462463 -151137467 + MER65C LTR ERV1 1 211 -250 2431 152 44 7 chrX 11462463 11462870 -151137060 - MSTB LTR MaLR 0 426 5 2647 136 11 44 chrX 11462870 11463113 -151136817 + MER65C LTR ERV1 211 461 0 2104 131 10 10 chrX 11464019 11464331 -151135599 - AluJb SINE Alu 0 312 1 188 358 15 36 chrX 11464471 11464608 -151135322 + L2 LINE L2 3139 3272 0 325 291 34 8 chrX 11464646 11464763 -151135167 - L2 LINE L2 -2 3311 3192 3154 114 44 16 chrX 11465072 11466009 -151133921 - MER11C LTR ERVK 0 1071 1 372 86 17 0 chrX 11466525 11466583 -151133347 + L1PA6 LINE L1 6093 6151 -3 992 164 13 69 chrX 11468263 11468495 -151131435 - MER20 DNA MER1_type 0 219 1 249 21 43 43 chrX 11468683 11468730 -151131200 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 782 213 4 101 chrX 11468770 11469047 -151130883 + MIR SINE MIR 7 256 -6 335 336 18 21 chrX 11469613 11469856 -151130074 + MIR SINE MIR 20 260 -2 250 254 34 0 chrX 11469968 11470027 -151129903 + MLT1A2 LTR MaLR 5 65 -309 40218 40 5 2 chrX 11470149 11475028 -151124902 - L1P LINE L1 -1238 4908 13 200 255 31 71 chrX 11475032 11475130 -151124800 + MIR SINE MIR 119 212 -50 396 285 70 27 chrX 11475260 11475447 -151124483 + MLT1J LTR MaLR 1 259 -331 6264 178 184 57 chrX 11475461 11477017 -151122913 + MER52A LTR ERV1 1 1753 -2 284 243 58 39 chrX 11477191 11477294 -151122636 + MLT1J LTR MaLR 399 503 -8 1860 132 3 75 chrX 11477410 11477743 -151122187 - AluJb SINE Alu -3 309 1 338 196 37 28 chrX 11478094 11478201 -151121729 + L1ME4a LINE L1 5967 6074 -47 614 275 10 71 chrX 11478353 11478648 -151121282 + L1PB2 LINE L1 5752 6028 -123 * 2559 162 24 6 chrX 11478391 11478859 -151121071 + L1MA7 LINE L1 5774 6249 -42 815 167 0 0 chrX 11478860 11479004 -151120926 + L1MB7 LINE L1 6022 6165 -19 49 18 0 0 chrX 11479323 11479379 -151120551 + AT_rich Low_complexity Low_complexity 1 56 0 1641 194 109 19 chrX 11480373 11480796 -151119134 + LTR37B LTR ERV1 6 466 -2 871 220 90 29 chrX 11481208 11481485 -151118445 - LTR19C LTR ERV1 0 779 486 * 1643 183 22 80 chrX 11481463 11481878 -151118052 - LTR9 LTR ERV1 -221 391 1 895 187 25 30 chrX 11483848 11484046 -151115884 + MER33 DNA MER1_type 1 197 -127 2653 143 19 7 chrX 11484051 11484199 -151115731 - Tigger2a DNA MER2_type -2283 425 280 2456 76 0 0 chrX 11484199 11484489 -151115441 + AluY SINE Alu 1 290 -21 2653 143 19 7 chrX 11484489 11484760 -151115170 - Tigger2a DNA MER2_type -2428 280 1 464 132 7 118 chrX 11484760 11484894 -151115036 + MER33 DNA MER1_type 197 315 -9 27 0 0 0 chrX 11486243 11486270 -151113660 + AT_rich Low_complexity Low_complexity 1 27 0 306 222 222 15 chrX 11486326 11486409 -151113521 - MER5B DNA MER1_type -15 163 99 401 0 20 0 chrX 11486409 11486458 -151113472 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 306 222 222 15 chrX 11486458 11486509 -151113421 - MER5B DNA MER1_type -79 99 1 2081 128 3 0 chrX 11486531 11486820 -151113110 - AluSx SINE Alu -18 294 5 202 87 43 0 chrX 11486826 11486872 -151113058 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 601 185 106 33 chrX 11487095 11487246 -151112684 - MER5A DNA MER1_type -2 187 26 248 262 107 0 chrX 11487308 11487392 -151112538 - L2 LINE L2 -20 3252 3160 2330 108 0 7 chrX 11487507 11487812 -151112118 + AluSx SINE Alu 1 303 -9 21 36 0 0 chrX 11487859 11487887 -151112043 + AT_rich Low_complexity Low_complexity 1 28 0 242 300 65 27 chrX 11488490 11488637 -151111293 + MIR SINE MIR 45 189 -63 2634 68 0 0 chrX 11488675 11488986 -151110944 + AluY SINE Alu 1 311 0 260 286 10 41 chrX 11489046 11489109 -151110821 + MIR SINE MIR 44 104 -104 662 191 150 116 chrX 11489109 11489548 -151110382 + LTR16A1 LTR ERVL 4 457 0 260 286 10 41 chrX 11489548 11489582 -151110348 + MIR SINE MIR 104 138 -70 2256 158 64 52 chrX 11489823 11490304 -151109626 + LTR22B LTR ERVK 1 487 -5 560 189 28 0 chrX 11490326 11490432 -151109498 - Tigger5 DNA MER2_type 0 2323 2215 388 162 67 18 chrX 11490432 11490587 -151109343 - L1MA9 LINE L1 -52 6137 5997 * 1051 166 29 62 chrX 11490547 11490788 -151109142 + L1MA9 LINE L1 5800 6032 -280 233 296 70 0 chrX 11492218 11492312 -151107618 - MER5B DNA MER1_type -78 111 2 689 170 152 6 chrX 11492327 11492492 -151107438 + MER5A DNA MER1_type 1 189 0 190 305 42 21 chrX 11492595 11492690 -151107240 - MIR SINE MIR -78 130 34 32 67 0 0 chrX 11493080 11493140 -151106790 + AT_rich Low_complexity Low_complexity 1 60 0 904 139 22 11 chrX 11493221 11493401 -151106529 - L1MA8 LINE L1 -2 6289 6108 800 172 0 15 chrX 11493402 11493536 -151106394 + FLAM_C SINE Alu 1 132 -11 2585 188 18 10 chrX 11493565 11494080 -151105850 - L1MB5 LINE L1 -6 6168 5650 3535 159 79 20 chrX 11495283 11495970 -151103960 + LTR8A LTR ERV1 1 727 0 2295 161 57 163 chrX 11496074 11496396 -151103534 + LTR8A LTR ERV1 1 356 -371 851 163 0 15 chrX 11496396 11496531 -151103399 - FLAM_C SINE Alu 0 133 1 2295 161 57 163 chrX 11496531 11497018 -151102912 + LTR8A LTR ERV1 356 724 -3 1675 221 53 18 chrX 11497103 11497537 -151102393 - L1ME1 LINE L1 -5 6161 5713 22 0 0 0 chrX 11497939 11497961 -151101969 + AT_rich Low_complexity Low_complexity 1 22 0 2105 135 50 19 chrX 11498016 11498378 -151101552 - THE1C LTR MaLR -2 373 1 2479 82 3 39 chrX 11498378 11498686 -151101244 - THE1C-int LTR MaLR 0 1580 1285 2324 89 7 10 chrX 11498686 11498988 -151100942 - AluSp SINE Alu -12 301 1 2479 82 3 39 chrX 11498988 11499035 -151100895 - THE1C-int LTR MaLR -295 1285 1238 369 0 0 0 chrX 11499036 11499077 -151100853 + (ATG)n Simple_repeat Simple_repeat 2 42 0 1587 136 32 51 chrX 11499112 11499573 -151100357 + MLT1D LTR MaLR 1 501 -4 23 0 0 0 chrX 11500904 11500927 -151099003 + AT_rich Low_complexity Low_complexity 1 23 0 837 212 30 35 chrX 11500975 11501206 -151098724 - L1MB8 LINE L1 -14 6164 5935 458 195 23 8 chrX 11501207 11501335 -151098595 + C-rich Low_complexity Low_complexity 4 133 0 515 215 17 17 chrX 11501374 11501546 -151098384 + C-rich Low_complexity Low_complexity 3 174 0 8131 87 2 0 chrX 11501702 11503536 -151096394 + L1PA8 LINE L1 4323 6166 -6 776 112 0 0 chrX 11503536 11503634 -151096296 + AluSg/x SINE Alu 193 290 -19 1974 129 32 44 chrX 11503780 11504121 -151095809 + MER44D DNA MER2_type 3 609 0 640 185 130 37 chrX 11504417 11504579 -151095351 - MER5A DNA MER1_type -11 178 2 943 206 41 41 chrX 11504628 11504846 -151095084 + MER20 DNA MER1_type 1 218 -1 263 178 0 0 chrX 11505012 11505057 -151094873 + Charlie8 DNA MER1_type 1381 1425 -992 195 369 136 10 chrX 11505061 11505164 -151094766 - MIR3 SINE MIR -48 160 45 1112 70 21 0 chrX 11505657 11505800 -151094130 + L1PA7 LINE L1 6009 6154 0 244 263 0 0 chrX 11505800 11505870 -151094060 + A-rich Low_complexity Low_complexity 8 80 0 1144 206 57 0 chrX 11505902 11506111 -151093819 + MER58A DNA MER1_type 1 221 -3 268 163 20 0 chrX 11506127 11506176 -151093754 + MER116 DNA Mariner 1 50 -30 23 0 0 0 chrX 11506329 11506352 -151093578 + AT_rich Low_complexity Low_complexity 1 23 0 471 288 146 5 chrX 11506734 11506939 -151092991 + MIR SINE MIR 19 252 -10 665 167 0 0 chrX 11507087 11507183 -151092747 + AluSg/x SINE Alu 177 272 -38 214 230 37 118 chrX 11508005 11508140 -151091790 + L2 LINE L2 2832 2955 -358 3249 157 23 14 chrX 11508167 11508723 -151091207 - L1MB7 LINE L1 -11 6173 5613 3583 135 24 24 chrX 11508723 11509307 -151090623 + MER41B LTR ERV1 4 587 -48 1636 181 21 9 chrX 11509311 11509637 -151090293 - L1MB7 LINE L1 -565 5619 5290 359 317 0 25 chrX 11509670 11509790 -151090140 + L2 LINE L2 3197 3313 0 203 0 37 0 chrX 11510272 11510299 -151089631 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 475 264 289 0 chrX 11511456 11511657 -151088273 + MIR SINE MIR 2 260 -2 459 249 102 69 chrX 11511670 11511975 -151087955 + L1ME4a LINE L1 5790 6104 -17 1891 149 70 24 chrX 11512675 11513045 -151086885 + LTR48 LTR ERV1 401 787 0 835 134 0 24 chrX 11513358 11513485 -151086445 - FLAM_C SINE Alu -11 132 9 487 320 11 17 chrX 11513824 11514002 -151085928 + MER5A DNA MER1_type 7 183 -6 1111 185 6 35 chrX 11514052 11514375 -151085555 - MLT1A1 LTR MaLR 0 365 1 639 182 51 132 chrX 11514506 11514831 -151085099 + L1ME1 LINE L1 5177 5472 -694 856 155 0 0 chrX 11514853 11514982 -151084948 - FRAM SINE Alu -23 153 25 2861 200 59 15 chrX 11515024 11515690 -151084240 + L1ME1 LINE L1 5467 6161 -5 2299 99 0 19 chrX 11515852 11516164 -151083766 + AluSg1 SINE Alu 1 306 -3 209 195 0 0 chrX 11516607 11516648 -151083282 + A-rich Low_complexity Low_complexity 2 42 0 229 293 50 20 chrX 11517757 11517856 -151082074 + L1ME LINE L1 5572 5673 -489 287 296 57 28 chrX 11518093 11518269 -151081661 - L1MC/D LINE L1 -762 5597 5417 1565 170 0 8 chrX 11518272 11518537 -151081393 - AluJb SINE Alu -11 301 39 3122 150 46 28 chrX 11518853 11519281 -151080649 + L1MB4 LINE L1 5604 6046 -134 1795 168 34 0 chrX 11519281 11519578 -151080352 - AluSx SINE Alu -5 307 1 3122 150 46 28 chrX 11519578 11519714 -151080216 + L1MB4 LINE L1 6046 6178 -2 440 254 137 50 chrX 11519808 11520305 -151079625 - L1MC/D LINE L1 -2685 3461 2922 1659 141 160 10 chrX 11520636 11520948 -151078982 + MSTA LTR MaLR 1 359 -69 657 86 0 0 chrX 11520948 11521041 -151078889 - L1M3 LINE L1 -500 5680 5588 2430 93 0 0 chrX 11521067 11521377 -151078553 - AluSg SINE Alu 0 310 1 818 129 0 168 chrX 11521685 11521887 -151078043 + MER45A DNA AcHobo 1 168 -10 381 297 45 0 chrX 11524048 11524159 -151075771 + L2 LINE L2 3197 3312 -1 1140 138 40 62 chrX 11524990 11525214 -151074716 + MER20 DNA MER1_type 1 219 0 1437 149 71 22 chrX 11525572 11525873 -151074057 + AluSg1 SINE Alu 1 314 0 337 340 0 9 chrX 11527572 11527678 -151072252 + G-rich Low_complexity Low_complexity 1 105 0 297 326 0 63 chrX 11527609 11527815 -151072115 + GA-rich Low_complexity Low_complexity 1 192 0 * 186 191 0 0 chrX 11527866 11527908 -151072022 + G-rich Low_complexity Low_complexity 1 42 0 248 424 0 0 chrX 11527930 11528029 -151071901 + G-rich Low_complexity Low_complexity 1 99 0 1614 45 10 0 chrX 11528216 11528418 -151071512 + L1PA6 LINE L1 5324 5527 -627 5227 62 2 0 chrX 11528571 11529184 -151070746 + L1PA6 LINE L1 5536 6149 -5 1812 130 27 57 chrX 11530023 11530113 -151069817 + MER44D DNA MER2_type 16 107 -2384 1855 146 10 7 chrX 11530113 11530415 -151069515 + AluSx SINE Alu 1 303 -9 1812 130 27 57 chrX 11530415 11530655 -151069275 + MER44D DNA MER2_type 107 606 -3 788 181 0 8 chrX 11531593 11531726 -151068204 - FLAM_C SINE Alu -9 134 3 212 175 0 25 chrX 11532081 11532121 -151067809 + (CA)n Simple_repeat Simple_repeat 2 40 0 475 198 30 0 chrX 11532873 11532974 -151066956 - LTR37B LTR ERV1 0 468 365 198 0 0 0 chrX 11532990 11533012 -151066918 + (CA)n Simple_repeat Simple_repeat 2 23 0 365 200 35 0 chrX 11533014 11533099 -151066831 - LTR37B LTR ERV1 -157 311 224 227 73 73 0 chrX 11533112 11533167 -151066763 + T-rich Low_complexity Low_complexity 2 60 0 669 213 25 45 chrX 11533223 11533425 -151066505 - LTR37B LTR ERV1 -267 201 4 8157 28 0 0 chrX 11534174 11535606 -151064324 - L1PA3 LINE L1 0 6155 4724 1938 148 7 0 chrX 11535817 11536119 -151063811 - AluSx SINE Alu 0 308 5 292 211 211 0 chrX 11536154 11536263 -151063667 - L1ME4a LINE L1 -12 6109 5978 230 339 26 32 chrX 11536443 11536632 -151063298 - L1ME LINE L1 -356 5765 5578 2333 44 0 0 chrX 11537645 11537915 -151062015 - AluY SINE Alu -2 309 40 219 167 0 0 chrX 11537915 11537957 -151061973 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 23 0 0 0 chrX 11538680 11538703 -151061227 + GC_rich Low_complexity Low_complexity 1 23 0 249 158 0 0 chrX 11539395 11539433 -151060497 - MER5B DNA MER1_type -135 43 6 450 249 148 47 chrX 11540059 11540228 -151059702 + MER5A DNA MER1_type 4 189 0 434 226 83 15 chrX 11540232 11540365 -151059565 - MER103 DNA DNA -20 146 5 484 251 43 59 chrX 11540390 11540442 -151059488 - L1ME3A LINE L1 -1 6169 6118 2914 202 8 8 chrX 11540442 11540961 -151058969 + LTR40a LTR ERVL 1 519 0 484 251 43 59 chrX 11540961 11541095 -151058835 - L1ME3A LINE L1 -52 6118 5986 684 261 101 10 chrX 11541160 11541367 -151058563 - MIR SINE MIR -6 256 31 2301 89 0 35 chrX 11541368 11541683 -151058247 - AluSq SINE Alu -9 304 1 385 129 14 43 chrX 11542725 11542795 -151057135 - MLT1G LTR MaLR -300 290 223 1962 152 0 13 chrX 11542953 11543268 -151056662 - AluSx SINE Alu -1 311 1 798 273 152 33 chrX 11543627 11544056 -151055874 - MLT1H1 LTR MaLR -8 547 68 2377 86 0 7 chrX 11544470 11544774 -151055156 - AluSg SINE Alu -8 302 1 1356 256 39 58 chrX 11545191 11545825 -151054105 + L1MEc LINE L1 1734 2355 -4041 1042 207 64 107 chrX 11546097 11546584 -151053346 - LTR37B LTR ERV1 0 468 3 578 296 15 35 chrX 11546659 11546862 -151053068 - MIR SINE MIR -36 226 28 23 33 0 0 chrX 11546983 11547013 -151052917 + AT_rich Low_complexity Low_complexity 1 30 0 428 258 157 25 chrX 11547516 11547675 -151052255 - MER5A DNA MER1_type -1 188 9 486 172 20 10 chrX 11547696 11547795 -151052135 - MER5B DNA MER1_type -6 172 73 6206 112 8 10 chrX 11547994 11548899 -151051031 + MER4D LTR ERV1 1 903 0 234 250 83 0 chrX 11548969 11549041 -151050889 + MER97c DNA MER1_type? 27 104 -986 390 161 0 0 chrX 11549057 11549119 -151050811 + MER89 LTR ERV1 12 73 -486 * 1864 175 86 3 chrX 11549094 11549442 -151050488 + MER89 LTR ERV1 183 559 0 300 225 56 0 chrX 11549442 11549521 -151050409 + MER97c DNA MER1_type? 89 172 -918 2227 113 7 0 chrX 11550711 11551011 -151048919 + AluSx SINE Alu 1 302 -10 265 135 0 0 chrX 11551045 11551082 -151048848 - 5S rRNA rRNA -82 39 3 735 132 0 73 chrX 11551201 11551337 -151048593 + LTR8 LTR ERV1 1 126 -565 1571 178 34 14 chrX 11552030 11552323 -151047607 + MER58B DNA MER1_type 43 341 0 324 0 0 0 chrX 11553500 11553536 -151046394 + (CA)n Simple_repeat Simple_repeat 2 37 0 500 262 58 16 chrX 11553705 11553896 -151046034 - MIR SINE MIR -61 201 3 998 137 0 46 chrX 11554311 11554486 -151045444 + MER20 DNA MER1_type 1 167 -52 1940 171 119 30 chrX 11554782 11555243 -151044687 + MLT1D LTR MaLR 1 502 -3 976 237 88 48 chrX 11556862 11557059 -151042871 + L1ME3A LINE L1 5462 5650 -520 2218 164 0 0 chrX 11557059 11557406 -151042524 + MER7A DNA MER2_type 2 346 0 976 237 88 48 chrX 11557406 11557605 -151042325 + L1ME3A LINE L1 5650 5874 -296 314 139 0 76 chrX 11557608 11557687 -151042243 + L1ME3A LINE L1 6027 6099 -71 850 263 0 0 chrX 11557838 11558013 -151041917 + MER58A DNA MER1_type 1 175 -49 234 204 20 0 chrX 11558937 11558986 -151040944 + CT-rich Low_complexity Low_complexity 4 53 0 1962 169 100 3 chrX 11559190 11559539 -151040391 - MER21B LTR ERV1 -480 383 1 355 300 91 0 chrX 11560297 11560407 -151039523 + MIR SINE MIR 88 207 -55 313 261 60 92 chrX 11560787 11560971 -151038959 - MIR3 SINE MIR -24 184 7 25 0 0 0 chrX 11561003 11561028 -151038902 + AT_rich Low_complexity Low_complexity 1 25 0 341 149 15 0 chrX 11561557 11561624 -151038306 + GA-rich Low_complexity Low_complexity 1 68 0 373 311 128 13 chrX 11563025 11563260 -151036670 - MIR SINE MIR 0 262 1 289 311 83 8 chrX 11563377 11563509 -151036421 + L2 LINE L2 3127 3268 -4 2314 99 6 10 chrX 11564206 11564519 -151035411 - AluSx SINE Alu 0 312 1 1656 204 29 112 chrX 11565848 11565864 -151034066 + MLT1G LTR MaLR 10 26 -564 2135 124 176 0 chrX 11565864 11566228 -151033702 - MSTA LTR MaLR 0 428 1 1656 204 29 112 chrX 11566228 11566755 -151033175 + MLT1G LTR MaLR 26 508 -82 1097 245 81 117 chrX 11566822 11567184 -151032746 - HAL1 LINE L1 -763 1744 1371 474 75 38 0 chrX 11567184 11567264 -151032666 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1097 245 81 117 chrX 11567264 11567407 -151032523 - HAL1 LINE L1 -1136 1371 1224 1614 164 32 48 chrX 11567407 11567719 -151032211 - AluJb SINE Alu -5 307 1 1097 245 81 117 chrX 11567719 11568308 -151031622 - HAL1 LINE L1 -1283 1224 688 578 289 58 69 chrX 11568363 11568709 -151031221 - MLT1I LTR MaLR -26 383 42 283 324 52 15 chrX 11568776 11568912 -151031018 - HAL1 LINE L1 -2366 141 1 360 59 0 0 chrX 11570115 11570166 -151029764 + (CA)n Simple_repeat Simple_repeat 2 52 0 489 271 39 86 chrX 11570225 11570480 -151029450 + HAL1 LINE L1 3 245 -2262 2745 139 36 72 chrX 11571468 11571970 -151027960 + MLT2B2 LTR ERVL 2 485 -30 2752 124 26 2 chrX 11572063 11572481 -151027449 - MSTC LTR MaLR 0 428 1 729 102 0 86 chrX 11572640 11572768 -151027162 + FLAM_C SINE Alu 27 143 0 696 233 141 0 chrX 11573024 11573187 -151026743 + MER5A DNA MER1_type 4 189 0 1337 254 147 43 chrX 11573393 11573583 -151026347 - MLT1G1 LTR MaLR 0 595 426 2719 83 3 0 chrX 11573583 11573933 -151025997 + THE1A LTR MaLR 1 351 -4 1337 254 147 43 chrX 11573933 11574281 -151025649 - MLT1G1 LTR MaLR -169 426 1 2114 120 0 43 chrX 11574389 11574715 -151025215 + AluSx SINE Alu 1 312 0 535 194 166 11 chrX 11574920 11575071 -151024859 - MER5A DNA MER1_type -7 182 5 557 258 5 58 chrX 11575999 11576189 -151023741 + MER5A DNA MER1_type 7 186 -3 888 183 21 42 chrX 11577386 11577577 -151022353 + MER58A DNA MER1_type 36 222 -2 360 259 58 29 chrX 11577723 11577862 -151022068 + L1ME4a LINE L1 5957 6099 -22 258 81 0 0 chrX 11577862 11577899 -151022031 + (CA)n Simple_repeat Simple_repeat 2 38 0 295 230 163 46 chrX 11578240 11578436 -151021494 - MLT1K LTR MaLR 0 588 370 477 157 0 0 chrX 11578575 11578645 -151021285 + AluSp SINE Alu 134 203 -110 17221 136 21 100 chrX 11578654 11582309 -151017621 + L1P LINE L1 12 3375 -2771 345 24 0 0 chrX 11582309 11582351 -151017579 + (CA)n Simple_repeat Simple_repeat 2 43 0 17221 136 21 100 chrX 11582351 11582374 -151017556 + L1P LINE L1 3375 3398 -2748 1880 168 27 3 chrX 11582373 11582701 -151017229 + L1P LINE L1 4072 4407 -1739 * 526 227 8 70 chrX 11583267 11583330 -151016600 + MLT1E3 LTR MaLR 505 558 -66 1768 176 10 6 chrX 11583330 11583642 -151016288 + AluSq SINE Alu 1 313 0 526 227 8 70 chrX 11583642 11583706 -151016224 + MLT1E3 LTR MaLR 558 624 0 286 179 265 8 chrX 11583765 11583882 -151016048 - MER5C DNA MER1_type -6 318 172 406 217 181 12 chrX 11583905 11584071 -151015859 - MER5C DNA MER1_type -92 232 39 383 324 51 23 chrX 11584121 11584337 -151015593 - MIR SINE MIR 0 262 41 337 313 21 21 chrX 11584751 11584895 -151015035 - MER5B DNA MER1_type -24 154 11 732 234 0 0 chrX 11586316 11586487 -151013443 + G-rich Low_complexity Low_complexity 1 171 0 412 210 16 24 chrX 11586507 11586631 -151013299 + G-rich Low_complexity Low_complexity 1 123 0 699 112 0 0 chrX 11586647 11586754 -151013176 + (TA)n Simple_repeat Simple_repeat 2 108 0 2086 210 46 44 chrX 11586754 11587258 -151012672 - MLT2B3 LTR ERVL -48 506 2 234 35 0 0 chrX 11587258 11587287 -151012643 - MLT1F LTR MaLR -513 29 1 1745 119 4 15 chrX 11588637 11588897 -151011033 + AluY SINE Alu 1 257 -54 212 209 14 40 chrX 11588907 11589055 -151010875 + C-rich Low_complexity Low_complexity 4 147 0 443 274 153 6 chrX 11589930 11590087 -151009843 + MER5A DNA MER1_type 10 189 0 219 286 63 48 chrX 11590092 11590218 -151009712 + MIR SINE MIR 19 146 -62 703 176 33 38 chrX 11590228 11590534 -151009396 - MLT1A1 LTR MaLR 0 374 24 300 306 16 16 chrX 11590536 11590660 -151009270 + C-rich Low_complexity Low_complexity 4 127 0 234 217 0 0 chrX 11590679 11590748 -151009182 + C-rich Low_complexity Low_complexity 1 69 0 340 306 19 64 chrX 11591330 11591487 -151008443 + L2 LINE L2 3116 3265 -7 582 282 72 0 chrX 11591554 11591735 -151008195 + MIR SINE MIR 3 196 -66 23 33 0 0 chrX 11591859 11591889 -151008041 + AT_rich Low_complexity Low_complexity 1 30 0 2356 102 10 0 chrX 11592231 11592535 -151007395 - AluSx SINE Alu -5 307 1 1141 151 55 83 chrX 11593392 11593704 -151006226 - MER33 DNA MER1_type -1 323 21 1585 159 0 0 chrX 11594786 11595018 -151004912 - AluJb SINE Alu -80 232 1 2132 121 3 3 chrX 11595477 11595782 -151004148 + AluSx SINE Alu 1 305 -7 405 297 208 26 chrX 11596115 11596505 -151003425 - L2 LINE L2 -1 3312 2852 22 0 0 0 chrX 11596637 11596659 -151003271 + AT_rich Low_complexity Low_complexity 1 22 0 213 278 89 56 chrX 11596837 11596927 -151003003 - MIR SINE MIR -118 144 52 1835 212 91 24 chrX 11597233 11597363 -151002567 + MLT1D LTR MaLR 13 133 -372 2104 138 71 59 chrX 11597363 11597426 -151002504 - MSTA LTR MaLR 0 428 367 2294 116 0 0 chrX 11597426 11597737 -151002193 - AluSx SINE Alu -1 311 1 2104 138 71 59 chrX 11597737 11598094 -151001836 - MSTA LTR MaLR -61 367 3 1835 212 91 24 chrX 11598094 11598425 -151001505 + MLT1D LTR MaLR 133 505 0 288 270 40 8 chrX 11598615 11598741 -151001189 + L1ME4a LINE L1 5969 6098 -23 261 0 0 0 chrX 11600108 11600137 -150999793 + (TG)n Simple_repeat Simple_repeat 1 29 0 3267 177 69 38 chrX 11600182 11600574 -150999356 - MER69 DNA AcHobo -1 2525 2147 2356 94 3 0 chrX 11600574 11600883 -150999047 + AluSq SINE Alu 1 310 -3 3267 177 69 38 chrX 11600883 11601342 -150998588 - MER69 DNA AcHobo -379 2147 1648 1853 230 68 22 chrX 11601382 11601899 -150998031 - MER69 DNA AcHobo -1832 694 92 1944 132 0 40 chrX 11602018 11602322 -150997608 - AluJo SINE Alu -20 292 1 212 236 91 0 chrX 11604196 11604251 -150995679 + MIR SINE MIR 203 262 0 1998 156 0 10 chrX 11604554 11604861 -150995069 - AluJb SINE Alu -8 304 1 312 333 81 10 chrX 11605203 11605401 -150994529 + L2 LINE L2 1820 2031 -1283 243 133 33 17 chrX 11606053 11606113 -150993817 + CT-rich Low_complexity Low_complexity 5 65 0 200 315 120 0 chrX 11606341 11606433 -150993497 + L2 LINE L2 3176 3278 -35 213 65 0 0 chrX 11606628 11606659 -150993271 + (T)n Simple_repeat Simple_repeat 1 31 0 344 267 136 48 chrX 11607151 11607357 -150992573 + MIR SINE MIR 13 236 -26 1615 221 53 42 chrX 11607541 11607997 -150991933 - MLT1C LTR MaLR -4 463 3 1181 265 65 9 chrX 11608055 11608380 -150991550 + LTR16A LTR ERVL 108 450 0 328 132 0 0 chrX 11609436 11609489 -150990441 - L2 LINE L2 0 3313 3261 1244 111 0 0 chrX 11609504 11609676 -150990254 + MLT1C LTR MaLR 1 172 -295 784 104 9 0 chrX 11609676 11609782 -150990148 + MLT1C LTR MaLR 361 467 0 339 197 0 0 chrX 11610434 11610495 -150989435 + MER116 DNA Mariner 6 66 -14 319 262 93 29 chrX 11610587 11610759 -150989171 + L1ME4a LINE L1 5936 6118 -3 2494 65 3 7 chrX 11610767 11611076 -150988854 + AluY SINE Alu 2 309 -2 230 339 26 32 chrX 11612089 11612278 -150987652 + L1ME LINE L1 5578 5765 -356 292 211 211 0 chrX 11612458 11612567 -150987363 + L1ME4a LINE L1 5978 6109 -12 1964 144 7 0 chrX 11612602 11612904 -150987026 + AluSx SINE Alu 5 308 0 2985 188 73 9 chrX 11613625 11614158 -150985772 + MLT1F1 LTR MaLR 1 567 0 2132 116 85 25 chrX 11616588 11616942 -150982988 - THE1C LTR MaLR 0 375 1 243 266 16 0 chrX 11617319 11617383 -150982547 - MER3 DNA MER1_type -144 65 1 226 311 122 0 chrX 11617599 11617689 -150982241 - L2 LINE L2 -8 3264 3164 2228 118 0 3 chrX 11617710 11618016 -150981914 + AluSx SINE Alu 1 305 -7 794 247 128 43 chrX 11618128 11618388 -150981542 + LTR16A LTR ERVL 51 325 -125 23 0 0 0 chrX 11619012 11619035 -150980895 + AT_rich Low_complexity Low_complexity 1 23 0 710 145 60 0 chrX 11619289 11619406 -150980524 + L1MC/D LINE L1 5691 5814 -519 222 226 0 75 chrX 11619555 11619608 -150980322 - L2 LINE L2 -10 3262 3214 599 217 143 0 chrX 11620765 11620920 -150979010 + MER5A DNA MER1_type 4 184 -5 791 219 15 56 chrX 11620932 11621128 -150978802 - MER5A DNA MER1_type 0 189 2 276 293 76 19 chrX 11621181 11621332 -150978598 + MIR SINE MIR 77 236 -26 467 215 130 107 chrX 11621332 11621509 -150978421 + MER5A DNA MER1_type 3 183 -6 21 0 0 0 chrX 11621963 11621984 -150977946 + AT_rich Low_complexity Low_complexity 1 21 0 285 330 70 0 chrX 11622716 11622816 -150977114 - MIR SINE MIR -64 144 38 526 214 22 112 chrX 11623166 11623402 -150976528 + L1ME2 LINE L1 5940 6162 -4 2217 113 7 0 chrX 11623935 11624236 -150975694 + AluSx SINE Alu 1 303 -9 263 135 0 0 chrX 11624270 11624307 -150975623 - 5S rRNA rRNA -82 39 3 3619 146 20 77 chrX 11624426 11625158 -150974772 + LTR8 LTR ERV1 1 691 0 1595 127 119 11 chrX 11625494 11625762 -150974168 + AluJb SINE Alu 1 297 -15 5322 195 88 26 chrX 11625887 11626212 -150973718 - Charlie1 DNA MER1_type 0 2761 2458 2526 141 111 77 chrX 11626212 11626756 -150973174 - LTR49 LTR ERV1 0 595 28 1945 151 0 0 chrX 11626756 11627178 -150972752 + AluSx SINE Alu 1 422 0 2526 141 111 77 chrX 11627178 11627207 -150972723 - LTR49 LTR ERV1 -567 28 1 5322 195 88 26 chrX 11627207 11628251 -150971679 - Charlie1 DNA MER1_type -303 2458 1 560 273 128 65 chrX 11628412 11629075 -150970855 - L2 LINE L2 -71 3242 2538 427 191 24 16 chrX 11629219 11629345 -150970585 + G-rich Low_complexity Low_complexity 5 131 0 337 315 76 22 chrX 11629668 11629852 -150970078 - MIR SINE MIR -19 243 50 2924 133 39 79 chrX 11630206 11630644 -150969286 + L1MB5 LINE L1 5604 6013 -161 2394 106 0 3 chrX 11630644 11630955 -150968975 + AluSx SINE Alu 1 310 -2 2924 133 39 79 chrX 11630955 11631111 -150968819 + L1MB5 LINE L1 6013 6174 0 1010 151 34 53 chrX 11631537 11631667 -150968263 + MER20 DNA MER1_type 16 142 -77 3912 132 52 59 chrX 11631667 11632363 -150967567 + LTR8 LTR ERV1 1 691 0 1010 151 34 53 chrX 11632363 11632438 -150967492 + MER20 DNA MER1_type 142 217 -2 27 49 0 0 chrX 11632873 11632914 -150967016 + AT_rich Low_complexity Low_complexity 1 41 0 2282 81 27 0 chrX 11633040 11633338 -150966592 - AluSx SINE Alu -2 310 5 180 0 0 0 chrX 11634254 11634274 -150965656 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1139 171 14 5 chrX 11634353 11634563 -150965367 - L1MD3 LINE L1 -79 7916 7705 264 30 0 0 chrX 11634678 11634711 -150965219 + (A)n Simple_repeat Simple_repeat 1 33 0 1921 269 39 45 chrX 11635425 11636021 -150963909 + MLT1E LTR MaLR 2 593 0 220 287 221 41 chrX 11637421 11637543 -150962387 + MIR3 SINE MIR 34 177 -31 323 171 184 0 chrX 11637941 11638017 -150961913 - MER53 DNA DNA -71 118 29 524 325 106 46 chrX 11638146 11638301 -150961629 + L2 LINE L2 2155 2299 -1015 2131 116 3 26 chrX 11638301 11638604 -150961326 - AluSx SINE Alu -12 300 5 524 325 106 46 chrX 11638604 11638987 -150960943 + L2 LINE L2 2299 2725 -589 1115 148 38 0 chrX 11639083 11639266 -150960664 + MER20 DNA MER1_type 5 194 -25 641 76 11 0 chrX 11640189 11640281 -150959649 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 36 23 0 0 chrX 11640283 11640326 -150959604 + AT_rich Low_complexity Low_complexity 1 43 0 1178 153 30 25 chrX 11640326 11640528 -150959402 - L1PA16 LINE L1 -9 6157 5955 621 232 43 81 chrX 11640687 11640872 -150959058 + MER5B DNA MER1_type 1 178 0 1215 146 92 29 chrX 11640880 11641086 -150958844 - MER20 DNA MER1_type 0 219 1 207 0 0 0 chrX 11641311 11641334 -150958596 + (TTA)n Simple_repeat Simple_repeat 2 24 0 606 196 0 0 chrX 11641334 11641431 -150958499 - AluJ SINE Alu -29 283 187 2196 118 54 33 chrX 11641431 11641979 -150957951 + MER51A LTR ERV1 1 634 0 1270 128 0 16 chrX 11641982 11642169 -150957761 - AluJ SINE Alu -125 187 4 2607 134 0 0 chrX 11642205 11642570 -150957360 - MER47A DNA MER2_type -1 365 1 892 151 41 101 chrX 11642724 11642942 -150956988 - MER3 DNA MER1_type 0 209 5 372 319 57 72 chrX 11643054 11643458 -150956472 + L2 LINE L2 2828 3225 -47 289 233 33 0 chrX 11643964 11644024 -150955906 + L2 LINE L2 3205 3266 -6 1750 238 70 39 chrX 11644124 11644611 -150955319 - MLT1D LTR MaLR -3 502 1 708 316 78 23 chrX 11644753 11645329 -150954601 - L1ME4a LINE L1 0 6121 5514 1619 201 27 84 chrX 11645357 11645771 -150954159 + MLT1B LTR MaLR 1 390 0 253 340 70 0 chrX 11646698 11646798 -150953132 - MIR SINE MIR -110 152 46 1224 301 141 45 chrX 11647108 11648077 -150951853 + L2 LINE L2 2009 3067 -246 515 273 36 46 chrX 11648218 11648412 -150951518 + MLT1J2 LTR MaLR 256 447 -3 378 335 101 22 chrX 11648474 11648701 -150951229 + L2 LINE L2 3027 3271 -1 1169 187 19 0 chrX 11650105 11650319 -150949611 + MER20 DNA MER1_type 1 218 -1 40 49 0 0 chrX 11650750 11650811 -150949119 + AT_rich Low_complexity Low_complexity 1 61 0 245 336 56 28 chrX 11651398 11651505 -150948425 + MER5B DNA MER1_type 17 126 -52 243 0 0 0 chrX 11651524 11651551 -150948379 + (CA)n Simple_repeat Simple_repeat 1 27 0 394 253 44 63 chrX 11651829 11651987 -150947943 + MIR3 SINE MIR 33 187 -21 304 158 18 0 chrX 11652195 11652252 -150947678 - MER58 DNA MER1_type -2 2418 2361 1757 137 7 28 chrX 11652316 11652600 -150947330 + AluJo SINE Alu 1 278 -34 371 188 0 0 chrX 11652815 11652884 -150947046 - MER81 DNA DNA -5 109 41 2002 139 4 0 chrX 11653793 11654073 -150945857 + AluSx SINE Alu 1 281 -31 505 95 0 0 chrX 11654113 11654176 -150945754 + Alu SINE Alu 224 286 -26 25 31 0 0 chrX 11654177 11654209 -150945721 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chrX 11654345 11654367 -150945563 + AT_rich Low_complexity Low_complexity 1 22 0 514 246 112 49 chrX 11654654 11654959 -150944971 + LTR50 LTR ERVL 471 794 -1 39 0 0 0 chrX 11655675 11655714 -150944216 + AT_rich Low_complexity Low_complexity 1 39 0 1496 139 36 7 chrX 11656136 11656410 -150943520 + L1MA5 LINE L1 6017 6298 -2 856 210 0 27 chrX 11656573 11656759 -150943171 - MLT1F1 LTR MaLR -2 565 385 695 203 57 18 chrX 11656761 11656988 -150942942 - L1 LINE L1 -1724 4422 4187 226 243 57 29 chrX 11657055 11657125 -150942805 + MIR SINE MIR 76 147 -61 2003 120 7 7 chrX 11659352 11659651 -150940279 + AluJb SINE Alu 1 299 -13 1010 204 51 41 chrX 11659949 11660263 -150939667 + L1ME3A LINE L1 5852 6168 -2 1582 251 33 4 chrX 11660988 11661467 -150938463 - Charlie4a DNA MER1_type -13 495 3 282 206 0 0 chrX 11661831 11661894 -150938036 + (TG)n Simple_repeat Simple_repeat 1 63 0 1736 148 8 11 chrX 11661912 11662175 -150937755 + AluSx SINE Alu 36 297 -15 633 323 71 39 chrX 11663665 11663832 -150936098 - MIR SINE MIR 0 262 83 888 251 124 27 chrX 11663832 11664203 -150935727 + MLT1I LTR MaLR 1 407 -2 633 323 71 39 chrX 11664203 11664289 -150935641 - MIR SINE MIR -179 83 1 283 362 83 23 chrX 11664725 11665018 -150934912 + L2 LINE L2 2712 3031 -241 803 262 23 19 chrX 11665337 11665593 -150934337 + MER41E LTR ERV1 226 482 -30 227 167 0 0 chrX 11665597 11665633 -150934297 + MER5B DNA MER1_type 120 155 -23 21 0 0 0 chrX 11665872 11665893 -150934037 + AT_rich Low_complexity Low_complexity 1 21 0 1144 128 44 5 chrX 11666173 11666377 -150933553 - MER4D LTR ERV1 -660 212 1 978 183 25 43 chrX 11667286 11667501 -150932429 + MLT1J2 LTR MaLR 3 213 -237 3901 168 15 115 chrX 11667501 11668555 -150931375 + LTR28 LTR ERV1 1 949 -71 558 225 65 75 chrX 11668682 11668882 -150931048 + MLT1J2 LTR MaLR 243 444 -6 378 42 0 0 chrX 11669913 11669961 -150929969 + (CA)n Simple_repeat Simple_repeat 2 49 0 236 253 212 20 chrX 11670102 11670201 -150929729 + MER5A DNA MER1_type 49 166 -23 * 480 218 18 36 chrX 11670121 11670231 -150929699 - MER5A DNA MER1_type -77 112 5 1263 210 93 51 chrX 11670258 11670471 -150929459 - MER39 LTR ERV1 0 681 478 2724 133 51 18 chrX 11670471 11670923 -150929007 + LTR24 LTR ERV1 1 467 0 1263 210 93 51 chrX 11670923 11671127 -150928803 - MER39 LTR ERV1 -203 478 266 385 296 148 6 chrX 11671375 11671537 -150928393 + MER5A DNA MER1_type 4 188 -1 1717 175 0 7 chrX 11671805 11672117 -150927813 - AluJo SINE Alu 0 310 1 351 346 103 48 chrX 11672484 11672912 -150927018 - L2 LINE L2 -1 3271 2868 318 50 0 0 chrX 11672912 11672952 -150926978 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 346 103 48 chrX 11672952 11673337 -150926593 - L2 LINE L2 -404 2868 2340 1144 208 60 7 chrX 11673397 11673681 -150926249 + L1MC4 LINE L1 7270 7568 -474 30 0 0 0 chrX 11673829 11673859 -150926071 + GC_rich Low_complexity Low_complexity 1 30 0 1903 153 0 10 chrX 11674180 11674488 -150925442 + AluJb SINE Alu 1 305 -7 597 316 135 51 chrX 11674666 11675169 -150924761 + HAL1b LINE L1 99 667 -681 2060 147 0 6 chrX 11675169 11675482 -150924448 - AluSx SINE Alu 0 312 2 597 316 135 51 chrX 11675482 11675608 -150924322 + HAL1b LINE L1 667 781 -567 30 59 0 0 chrX 11675615 11675666 -150924264 + AT_rich Low_complexity Low_complexity 1 51 0 748 207 29 76 chrX 11675707 11676021 -150923909 + L1MC4 LINE L1 7743 8041 -1 23 54 0 0 chrX 11676022 11676059 -150923871 + AT_rich Low_complexity Low_complexity 1 37 0 182 296 28 56 chrX 11676066 11676174 -150923756 - L2 LINE L2 -1407 1907 1803 1212 180 17 44 chrX 11676772 11677067 -150922863 + L1MA9 LINE L1 5990 6276 -36 377 264 75 88 chrX 11677276 11677412 -150922518 - L1ME4a LINE L1 -249 5872 5739 1488 125 0 9 chrX 11677412 11677628 -150922302 - AluSg/x SINE Alu -13 297 84 377 264 75 88 chrX 11677628 11677730 -150922200 - L1ME4a LINE L1 -382 5739 5637 30 27 0 0 chrX 11677786 11677823 -150922107 + AT_rich Low_complexity Low_complexity 1 37 0 502 313 108 0 chrX 11678283 11678459 -150921471 - MIR3 SINE MIR -11 197 3 1547 147 77 53 chrX 11679735 11680151 -150919779 + LTR37A LTR ERV1 1 426 0 2327 105 0 16 chrX 11680299 11680614 -150919316 - AluSx SINE Alu -2 310 1 655 136 19 10 chrX 11680849 11681012 -150918918 - MER20 DNA MER1_type 0 219 1 694 256 39 6 chrX 11681854 11682034 -150917896 - LTR16C LTR ERVL -3 488 303 607 224 84 0 chrX 11682016 11682159 -150917771 + MER58B DNA MER1_type 186 340 -1 * 244 344 10 0 chrX 11682494 11682590 -150917340 + MER117 DNA MER1_type 74 170 -27 2817 129 11 25 chrX 11682741 11683261 -150916669 - L1MC2 LINE L1 -115 6229 5717 4341 191 47 27 chrX 11683267 11685901 -150914029 - L1MCa LINE L1 -2697 3867 1092 2743 85 3 11 chrX 11685904 11686270 -150913660 - THE1B LTR MaLR -1 363 1 1272 270 89 62 chrX 11686302 11686979 -150912951 - MER21B LTR ERV1 -149 714 20 1942 163 3 3 chrX 11686982 11687283 -150912647 - AluJb SINE Alu -11 301 1 2289 233 40 34 chrX 11687302 11688009 -150911921 - L1MCa LINE L1 -4950 1095 385 1445 236 79 16 chrX 11688061 11688489 -150911441 - L1MCa LINE L1 -5936 490 36 1129 178 9 61 chrX 11689185 11689416 -150910514 + MER20 DNA MER1_type 1 219 0 317 260 123 13 chrX 11690018 11690172 -150909758 - L1ME4a LINE L1 -19 6102 5932 835 70 0 9 chrX 11690286 11690400 -150909530 - L1PB1 LINE L1 0 6151 6039 216 86 0 0 chrX 11690518 11690553 -150909377 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 11690926 11690957 -150908973 + AT_rich Low_complexity Low_complexity 1 31 0 2172 169 57 21 chrX 11690993 11691412 -150908518 - Tigger2a DNA MER2_type 0 434 1 257 75 25 0 chrX 11692623 11692663 -150907267 + (TG)n Simple_repeat Simple_repeat 2 42 0 189 340 0 0 chrX 11698265 11698318 -150901612 - L2 LINE L2 -696 2618 2566 1807 129 4 0 chrX 11700585 11700849 -150899081 + AluSx SINE Alu 6 270 -42 2342 81 7 0 chrX 11713872 11714168 -150885762 + AluY SINE Alu 1 298 -13 198 0 0 0 chrX 11714207 11714229 -150885701 + (TC)n Simple_repeat Simple_repeat 2 23 0 180 0 0 0 chrX 11714228 11714248 -150885682 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 4909 44 0 5 chrX 11714272 11714838 -150885092 - L1PA7 LINE L1 -6 6148 5586 299 50 0 0 chrX 11714838 11714878 -150885052 + L1P3 LINE L1 5424 5463 -691 1992 136 17 0 chrX 11717441 11717736 -150882194 - AluSx SINE Alu -12 300 1 967 180 0 12 chrX 11718419 11718580 -150881350 + AluJb SINE Alu 136 294 -18 1494 70 5 0 chrX 11719752 11719937 -150879993 - AluY SINE Alu -125 186 1 190 103 103 26 chrX 11720476 11720515 -150879415 + L2 LINE L2 3272 3313 0 300 291 94 17 chrX 11721153 11721270 -150878660 - L2 LINE L2 0 3313 3188 465 263 59 0 chrX 11721286 11721404 -150878526 - MER94 DNA DNA -8 126 2 21 71 0 0 chrX 11721497 11721539 -150878391 + AT_rich Low_complexity Low_complexity 1 42 0 192 354 163 6 chrX 11721693 11721871 -150878059 - L2 LINE L2 -401 2913 2708 259 368 0 23 chrX 11722442 11722529 -150877401 + MER91A DNA MER1_type 24 108 -88 1895 140 50 3 chrX 11722686 11723007 -150876923 - MER61A LTR ERV1 -7 336 1 225 0 0 0 chrX 11723821 11723846 -150876084 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2189 78 4 11 chrX 11723846 11724127 -150875803 - AluSx SINE Alu -33 279 1 1019 135 57 105 chrX 11724514 11724743 -150875187 + MER20 DNA MER1_type 1 218 -1 1858 114 59 114 chrX 11725016 11725155 -150874775 - L1MA9 LINE L1 0 6312 6167 300 53 0 0 chrX 11725155 11725193 -150874737 + (TG)n Simple_repeat Simple_repeat 1 38 0 1858 114 59 114 chrX 11725193 11725474 -150874456 - L1MA9 LINE L1 -145 6167 5915 1879 145 81 103 chrX 11725497 11726056 -150873874 - LTR49 LTR ERV1 -22 600 29 2187 114 10 3 chrX 11726063 11726371 -150873559 - L1PB3 LINE L1 0 6154 5845 415 170 32 0 chrX 11726372 11726466 -150873464 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 650 137 29 0 chrX 11726466 11726568 -150873362 - L1PB3 LINE L1 -600 5554 5450 685 184 0 0 chrX 11726568 11726677 -150873253 - FLAM_C SINE Alu -32 111 3 273 184 0 0 chrX 11726685 11726734 -150873196 - L1PB3 LINE L1 -1143 5003 4955 1084 124 94 113 chrX 11726768 11726888 -150873042 - L1MA9 LINE L1 -395 5917 5796 2181 127 0 0 chrX 11726888 11727180 -150872750 - AluSx SINE Alu -20 292 1 1084 124 94 113 chrX 11727180 11727324 -150872606 - L1MA9 LINE L1 -516 5796 5658 1922 193 62 7 chrX 11727325 11727730 -150872200 + L1MB4 LINE L1 4782 5208 -938 1119 182 57 0 chrX 11728314 11728523 -150871407 + L1MB4 LINE L1 5954 6174 -6 223 290 16 0 chrX 11728626 11728688 -150871242 - L2 LINE L2 -12 3260 3198 1248 273 11 67 chrX 11728698 11728743 -150871187 - LTR16B LTR ERVL -15 449 403 2051 138 0 25 chrX 11728743 11729061 -150870869 + AluJo SINE Alu 1 310 -2 1248 273 11 67 chrX 11729061 11729491 -150870439 - LTR16B LTR ERVL -61 403 1 317 269 168 27 chrX 11729499 11729648 -150870282 - MIR SINE MIR -70 192 23 1862 150 0 33 chrX 11730152 11730459 -150869471 - AluJb SINE Alu -15 297 1 247 265 0 71 chrX 11730638 11730736 -150869194 - L1ME LINE L1 -234 5887 5797 321 284 0 25 chrX 11730792 11730873 -150869057 - L2 LINE L2 0 3313 3235 1523 198 86 24 chrX 11730874 11731248 -150868682 + L1ME1 LINE L1 5724 6120 -46 423 140 168 47 chrX 11731179 11731286 -150868644 + L1MA10 LINE L1 6213 6332 -2 * 217 281 0 16 chrX 11731305 11731369 -150868561 - L2 LINE L2 -286 2986 2924 961 237 47 13 chrX 11731389 11731621 -150868309 - MIR SINE MIR -21 241 2 2445 69 3 0 chrX 11732036 11732339 -150867591 - AluY SINE Alu -7 304 1 281 290 65 0 chrX 11733658 11733765 -150866165 - MIR SINE MIR -65 143 30 379 241 128 23 chrX 11733878 11734011 -150865919 + MER103 DNA DNA 2 148 -18 1718 132 48 11 chrX 11734260 11734562 -150865368 - AluJo SINE Alu 0 316 5 983 295 68 3 chrX 11734683 11735005 -150864925 + MLT1I LTR MaLR 60 402 -7 292 177 0 32 chrX 11735246 11735308 -150864622 - L1MC4 LINE L1 -1333 6709 6650 2043 128 14 0 chrX 11735570 11735866 -150864064 + AluSx SINE Alu 1 300 -12 1854 157 0 10 chrX 11736981 11737280 -150862650 + AluJb SINE Alu 1 296 -16 1374 275 127 19 chrX 11737617 11738900 -150861030 - L1ME3 LINE L1 -333 5829 4357 2461 74 3 0 chrX 11738953 11739252 -150860678 - AluSp SINE Alu -13 300 1 709 177 0 26 chrX 11739601 11739714 -150860216 + FAM SINE Alu 48 157 -28 2379 86 6 13 chrX 11739714 11740028 -150859902 - AluSx SINE Alu 0 312 1 289 223 245 0 chrX 11741522 11741616 -150858314 + MER5C DNA MER1_type 8 124 -200 331 257 136 38 chrX 11741983 11742225 -150857705 - L1MC/D LINE L1 -732 5442 5291 328 263 8 25 chrX 11742200 11742318 -150857612 - L1MEd LINE L1 -5944 175 60 * 441 341 41 16 chrX 11743876 11744071 -150855859 + L1ME4a LINE L1 5479 5683 -438 1739 165 3 34 chrX 11744071 11744393 -150855537 + AluJb SINE Alu 1 312 0 441 341 41 16 chrX 11744393 11744443 -150855487 + L1ME4a LINE L1 5683 5730 -391 632 307 95 43 chrX 11744573 11744941 -150854989 + LTR16C LTR ERVL 97 483 -8 353 158 79 0 chrX 11744949 11745025 -150854905 + L1ME4a LINE L1 5737 5818 -303 * 1753 234 44 53 chrX 11744994 11745312 -150854618 + L1ME1 LINE L1 5604 5900 -266 2176 121 3 0 chrX 11745312 11745609 -150854321 - AluSx SINE Alu -14 298 1 1753 234 44 53 chrX 11745609 11745868 -150854062 + L1ME1 LINE L1 5900 6160 -6 296 238 74 16 chrX 11746029 11746151 -150853779 + L1ME4a LINE L1 5989 6117 -4 1077 155 0 11 chrX 11747839 11748020 -150851910 - FRAM SINE Alu 0 176 1 943 172 18 0 chrX 11748293 11748462 -150851468 - MER5B DNA MER1_type -6 172 1 948 201 17 0 chrX 11748482 11748656 -150851274 + MER58A DNA MER1_type 45 221 -3 469 183 9 9 chrX 11751773 11751888 -150848042 + CT-rich Low_complexity Low_complexity 2 116 0 195 42 0 0 chrX 11752914 11752938 -150846992 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 277 240 27 0 chrX 11753653 11753728 -150846202 - MER103 DNA DNA -82 84 8 303 325 127 33 chrX 11754204 11754536 -150845394 - L3b LINE CR1 -114 1469 1107 202 284 95 27 chrX 11754599 11754673 -150845257 - MER5A DNA MER1_type 0 189 111 2328 72 7 0 chrX 11804996 11805287 -150794643 - AluY SINE Alu -18 293 1 286 231 62 0 chrX 11805380 11805445 -150794485 + L2 LINE L2 3245 3313 0 791 172 14 0 chrX 11807412 11807557 -150792373 - L1MA9 LINE L1 -7 6305 6159 661 225 6 6 chrX 11807564 11807742 -150792188 + CT-rich Low_complexity Low_complexity 3 180 0 1114 161 40 22 chrX 11807746 11807993 -150791937 - L1MA9 LINE L1 -4 6185 5926 231 36 0 0 chrX 11808720 11808748 -150791182 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1999 88 0 8 chrX 11808775 11809037 -150790893 - AluSq SINE Alu -53 260 1 1879 146 0 41 chrX 11812177 11812554 -150787376 + AluJo SINE Alu 11 374 0 2292 152 86 8 chrX 11812645 11813040 -150786890 - MSTB LTR MaLR 0 426 1 681 168 0 0 chrX 11813067 11813174 -150786756 - MER20 DNA MER1_type -20 199 93 360 214 0 0 chrX 11813170 11813254 -150786676 - MER53 DNA DNA -50 139 56 * 193 220 40 0 chrX 11813459 11813509 -150786421 + L2 LINE L2 3262 3313 0 1901 159 13 19 chrX 11813777 11814091 -150785839 + AluJo SINE Alu 1 312 0 227 217 72 60 chrX 11814118 11814201 -150785729 - L2 LINE L2 0 3313 3230 327 307 162 4 chrX 11814313 11814554 -150785376 - L1MC4a LINE L1 -1630 6178 5900 2093 207 26 46 chrX 11814554 11815096 -150784834 + LTR55 LTR ERV 1 531 -17 1035 224 144 32 chrX 11815104 11815457 -150784473 - L1MC4a LINE L1 -349 5772 5497 221 353 41 25 chrX 11815527 11815649 -150784281 + L2 LINE L2 3117 3240 -32 995 252 103 53 chrX 11815726 11816162 -150783768 + LTR16C LTR ERVL 34 491 0 1559 163 9 92 chrX 11816172 11816509 -150783421 - AluJb SINE Alu -3 309 1 223 284 40 14 chrX 11816516 11816590 -150783340 - MIR SINE MIR -123 139 64 568 222 217 35 chrX 11816772 11816975 -150782955 - MIR SINE MIR -22 240 1 650 223 68 86 chrX 11817110 11817465 -150782465 - MLT1L LTR MaLR 0 615 202 241 224 90 15 chrX 11817439 11817506 -150782424 - LTR67 LTR ERVL -389 168 97 * 425 213 44 88 chrX 11818013 11818173 -150781757 - MIR SINE MIR -2 260 108 624 205 18 0 chrX 11818284 11818396 -150781534 - MER81 DNA DNA 0 114 1 967 216 33 14 chrX 11818594 11818742 -150781188 - LTR8A LTR ERV1 -3 724 569 1661 60 0 0 chrX 11818742 11818943 -150780987 - AluY SINE Alu 0 311 111 967 216 33 14 chrX 11818943 11819007 -150780923 - LTR8A LTR ERV1 -158 569 508 248 77 77 0 chrX 11819002 11819041 -150780889 + Charlie5 DNA MER1_type 2464 2505 -107 * 697 97 32 78 chrX 11819041 11819154 -150780776 + Charlie5 DNA MER1_type 2438 2544 -41 2026 106 39 0 chrX 11819154 11819438 -150780492 + AluSx SINE Alu 1 295 -17 697 97 32 78 chrX 11819438 11819478 -150780452 + Charlie5 DNA MER1_type 2544 2584 -1 21 36 0 0 chrX 11819927 11819955 -150779975 + AT_rich Low_complexity Low_complexity 1 28 0 195 146 18 91 chrX 11820008 11820063 -150779867 - MIR SINE MIR -91 171 121 716 228 28 79 chrX 11820109 11820324 -150779606 - MER63A DNA MER1_type -5 205 2 2696 141 5 18 chrX 11820369 11820767 -150779163 - MSTD LTR MaLR -3 393 1 2210 92 7 16 chrX 11820836 11821140 -150778790 - AluSq SINE Alu -12 301 1 403 222 43 8 chrX 11822122 11822239 -150777691 + Charlie8 DNA MER1_type 85 205 -2212 230 173 58 0 chrX 11822237 11822289 -150777641 + Charlie8 DNA MER1_type 2360 2414 -3 * 1068 250 60 0 chrX 11822488 11822772 -150777158 + MER46C DNA MER2_type 17 317 -21 2467 182 7 9 chrX 11824030 11824475 -150775455 + L1PB4 LINE L1 5712 6155 -1 513 244 31 25 chrX 11824790 11824950 -150774980 + LTR37B LTR ERV1 1 161 -307 1133 232 119 3 chrX 11825004 11825357 -150774573 + LTR37A LTR ERV1 33 426 0 847 204 41 48 chrX 11825417 11825686 -150774244 + LTR37B LTR ERV1 197 463 -5 405 0 0 0 chrX 11826108 11826153 -150773777 + (CA)n Simple_repeat Simple_repeat 2 46 0 261 0 0 0 chrX 11826611 11826640 -150773290 + (TG)n Simple_repeat Simple_repeat 2 30 0 225 316 103 26 chrX 11826655 11826772 -150773158 + L2 LINE L2 3182 3307 -6 230 271 135 90 chrX 11827209 11827342 -150772588 - L2 LINE L2 0 3272 3134 2001 153 78 26 chrX 11828003 11828350 -150771580 - MLT1A1 LTR MaLR 0 365 1 2445 94 106 3 chrX 11828747 11829087 -150770843 - THE1C LTR MaLR 0 375 1 2448 139 127 5 chrX 11829712 11830152 -150769778 - LTR54B LTR ERV1 -2 496 3 302 234 9 0 chrX 11830571 11830678 -150769252 + (CA)n Simple_repeat Simple_repeat 2 109 0 2237 129 0 0 chrX 11830850 11831152 -150768778 + AluJb SINE Alu 1 302 -10 2802 196 95 29 chrX 11832247 11832803 -150767127 - MLT1E LTR MaLR 0 593 1 830 204 0 13 chrX 11832986 11833138 -150766792 - FRAM SINE Alu -7 169 20 591 288 112 0 chrX 11833410 11833625 -150766305 + MIR SINE MIR 3 241 -21 1588 132 0 0 chrX 11833650 11833905 -150766025 - AluSg/x SINE Alu 0 326 72 1951 141 0 10 chrX 11834320 11834617 -150765313 - AluJb SINE Alu -18 294 1 599 168 30 0 chrX 11834891 11834992 -150764938 - MER5A DNA MER1_type -77 112 9 316 177 35 133 chrX 11835314 11835362 -150764568 + MER21B LTR ERV1 732 764 -99 243 0 0 0 chrX 11835362 11835389 -150764541 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 316 177 35 133 chrX 11835389 11835453 -150764477 + MER21B LTR ERV1 764 833 -30 261 192 417 0 chrX 11835765 11835885 -150764045 - MER5B DNA MER1_type -7 171 2 767 251 27 0 chrX 11835893 11836076 -150763854 - MER5A DNA MER1_type -1 188 1 546 175 26 44 chrX 11836084 11836198 -150763732 + MER58A DNA MER1_type 1 112 0 779 170 20 14 chrX 11836230 11836377 -150763553 - MER5A DNA MER1_type -7 182 35 4249 171 31 36 chrX 11836381 11837221 -150762709 - MER21B LTR ERV1 -9 854 19 332 266 13 13 chrX 11837243 11837322 -150762608 - MER21B LTR ERV1 -773 90 12 371 102 0 0 chrX 11837336 11837385 -150762545 - MER5A DNA MER1_type -139 50 2 3273 101 11 15 chrX 11837413 11837465 -150762465 - L1PA16 LINE L1 -9 6157 6106 2399 117 141 5 chrX 11837465 11837842 -150762088 + MSTA LTR MaLR 1 428 0 3273 101 11 15 chrX 11837842 11838244 -150761686 - L1PA16 LINE L1 -60 6106 5705 2245 106 3 3 chrX 11838692 11838993 -150760937 + AluSx SINE Alu 1 301 -11 532 338 148 3 chrX 11839105 11839436 -150760494 - MLT1K LTR MaLR -141 447 69 1816 147 33 0 chrX 11839589 11839900 -150760030 + AluSx SINE Alu 1 320 0 728 104 37 20 chrX 11840665 11840909 -150759021 + (TA)n Simple_repeat Simple_repeat 1 248 0 23 33 0 0 chrX 11840909 11840939 -150758991 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 11840974 11840996 -150758934 + AT_rich Low_complexity Low_complexity 1 22 0 1175 159 85 0 chrX 11841851 11842052 -150757878 + MER20 DNA MER1_type 1 218 -1 401 178 0 11 chrX 11842815 11842905 -150757025 + CT-rich Low_complexity Low_complexity 1 89 0 24 0 0 0 chrX 11842964 11842988 -150756942 + AT_rich Low_complexity Low_complexity 1 24 0 682 278 92 49 chrX 11843533 11844124 -150755806 + L2 LINE L2 2531 3275 -38 2787 13 3 6 chrX 11844289 11844601 -150755329 + AluYa5 SINE Alu 1 311 0 1807 135 0 77 chrX 11844612 11844939 -150754991 + AluJb SINE Alu 1 302 -10 299 261 0 15 chrX 11845174 11845239 -150754691 + L2 LINE L2 3212 3275 -38 1165 164 83 83 chrX 11845346 11845670 -150754260 - MER33 DNA MER1_type 0 324 1 1051 282 69 28 chrX 11845719 11846315 -150753615 - L2 LINE L2 0 3313 2683 308 163 0 93 chrX 11846731 11846817 -150753113 + HsTC2 DNA Tc2 1819 1896 -2 508 213 40 87 chrX 11846825 11846975 -150752955 - MIR SINE MIR -118 144 2 428 181 0 11 chrX 11847562 11847656 -150752274 + GA-rich Low_complexity Low_complexity 3 95 0 560 271 21 0 chrX 11848292 11848436 -150751494 - MIR SINE MIR -65 197 51 268 254 0 0 chrX 11848483 11848538 -150751392 + MER46C DNA MER2_type 284 338 0 1077 216 68 15 chrX 11848727 11848991 -150750939 - MER46C DNA MER2_type -59 279 2 1914 199 89 60 chrX 11849424 11849941 -150749989 + MLT1F LTR MaLR 11 542 0 1125 246 101 26 chrX 11850847 11851304 -150748626 + MLT1H LTR MaLR 1 536 -13 805 299 175 18 chrX 11851405 11851806 -150748124 - HAL1 LINE L1 -1834 673 210 1042 116 152 54 chrX 11851989 11852213 -150747717 + THE1C LTR MaLR 1 246 -129 2271 110 0 16 chrX 11852222 11852532 -150747398 - AluSx SINE Alu -7 305 1 248 143 0 24 chrX 11852532 11852574 -150747356 + THE1C LTR MaLR 388 428 0 234 326 32 0 chrX 11854209 11854304 -150745626 + L3b LINE CR1 1301 1398 -185 2000 150 3 7 chrX 11854372 11854679 -150745251 - AluSx SINE Alu -2 310 5 1161 381 87 16 chrX 11855605 11856030 -150743900 - LTR16A1 LTR ERVL 0 457 3 984 161 89 0 chrX 11856039 11856207 -150743723 - MER5A DNA MER1_type -6 183 1 2162 131 0 0 chrX 11856450 11856747 -150743183 + AluSx SINE Alu 2 298 -14 402 301 7 37 chrX 11856764 11856900 -150743030 + MIR3 SINE MIR 1 132 -76 257 316 44 29 chrX 11856908 11857044 -150742886 + MIR3 SINE MIR 65 202 -6 369 0 0 0 chrX 11857652 11857693 -150742237 + (TG)n Simple_repeat Simple_repeat 2 42 0 1370 286 126 31 chrX 11857693 11857704 -150742226 - L2 LINE L2 -123 3190 3181 605 113 0 0 chrX 11857704 11857784 -150742146 - MADE1 DNA Mariner 0 80 1 1370 286 126 31 chrX 11857784 11858668 -150741262 - L2 LINE L2 -132 3181 2225 5115 167 27 5 chrX 11858984 11860002 -150739928 + L1MB5 LINE L1 5137 6173 -1 369 267 11 11 chrX 11861198 11861288 -150738642 - L2 LINE L2 -2 3270 3181 316 376 61 15 chrX 11862093 11862356 -150737574 + L3 LINE CR1 683 957 -620 22 35 0 0 chrX 11862704 11862733 -150737197 + AT_rich Low_complexity Low_complexity 1 29 0 2242 123 0 0 chrX 11863783 11864085 -150735845 - AluSx SINE Alu -10 302 1 272 263 119 17 chrX 11865528 11865646 -150734284 + L2 LINE L2 3139 3268 -4 276 310 92 87 chrX 11865830 11866233 -150733697 - L2 LINE L2 -11 3261 2857 279 258 151 0 chrX 11866363 11866456 -150733474 - MIR SINE MIR -69 139 33 242 256 11 89 chrX 11866993 11867083 -150732847 + MLT1J LTR MaLR 9 91 -420 842 158 10 19 chrX 11867086 11867268 -150732662 + L1MA4 LINE L1 5849 6033 -267 4319 62 0 0 chrX 11867271 11867784 -150732146 - L1PA7 LINE L1 0 6154 5642 2040 51 8 0 chrX 11867784 11868038 -150731892 + L1P3 LINE L1 5341 5596 -558 1369 148 12 23 chrX 11868052 11868066 -150731864 + L1MA4 LINE L1 6038 6051 -249 2117 133 0 22 chrX 11868066 11868383 -150731547 + AluSx SINE Alu 1 310 -2 1369 148 12 23 chrX 11868383 11868625 -150731305 + L1MA4 LINE L1 6051 6291 -9 424 226 18 98 chrX 11868920 11869040 -150730890 - L1ME3 LINE L1 0 6162 6057 995 187 64 46 chrX 11869040 11869259 -150730671 + MER58A DNA MER1_type 1 223 -1 424 226 18 98 chrX 11869259 11869302 -150730628 - L1ME3 LINE L1 -105 6057 6012 204 40 0 0 chrX 11869772 11869797 -150730133 + (T)n Simple_repeat Simple_repeat 1 25 0 294 173 19 0 chrX 11870744 11870796 -150729134 + LTR16C LTR ERVL 58 110 -381 940 228 84 8 chrX 11870879 11871116 -150728814 + LTR16C LTR ERVL 237 491 0 743 300 69 13 chrX 11871989 11872222 -150727708 + MIR SINE MIR 7 252 -10 1676 61 0 0 chrX 11873643 11873839 -150726091 - AluY SINE Alu -17 294 99 2255 104 0 0 chrX 11875091 11875388 -150724542 + AluSg SINE Alu 2 298 -12 417 174 0 23 chrX 11875488 11875574 -150724356 + AluS SINE Alu 225 308 -1 859 207 77 67 chrX 11876383 11876668 -150723262 + LTR8A LTR ERV1 376 663 -64 447 269 83 52 chrX 11877120 11877313 -150722617 - MIR SINE MIR 0 262 64 21 0 0 0 chrX 11877644 11877665 -150722265 + AT_rich Low_complexity Low_complexity 1 21 0 2141 245 82 14 chrX 11877747 11878418 -150721512 + L1MC4a LINE L1 5214 7482 -560 294 243 45 54 chrX 11878523 11878634 -150721296 + L2 LINE L2 2377 2486 -828 1929 150 0 13 chrX 11878647 11878953 -150720977 - AluJo SINE Alu -10 302 1 834 164 14 7 chrX 11879243 11879383 -150720547 - MLT1J2 LTR MaLR -308 142 2 26 64 0 0 chrX 11879431 11879478 -150720452 + AT_rich Low_complexity Low_complexity 1 47 0 2165 104 3 7 chrX 11879786 11880085 -150719845 - AluSx SINE Alu -14 298 1 329 142 8 213 chrX 11880446 11880573 -150719357 - MER5B DNA MER1_type -77 101 1 1326 159 23 5 chrX 11881143 11881357 -150718573 - MER20 DNA MER1_type 0 219 2 1202 136 23 50 chrX 11881550 11881770 -150718160 + MER20 DNA MER1_type 6 219 0 1054 206 10 5 chrX 11881840 11882044 -150717886 + MER20 DNA MER1_type 2 206 -13 1714 149 73 0 chrX 11882625 11882900 -150717030 + AluJb SINE Alu 1 295 -17 186 255 0 0 chrX 11883130 11883181 -150716749 + (CA)n Simple_repeat Simple_repeat 1 51 0 25 0 0 0 chrX 11883365 11883390 -150716540 + AT_rich Low_complexity Low_complexity 1 25 0 289 210 219 8 chrX 11883391 11883510 -150716420 - L1ME4a LINE L1 -12 6109 5966 292 294 82 14 chrX 11883645 11883791 -150716139 - L1ME4a LINE L1 -2 6119 5964 388 312 135 0 chrX 11884315 11884485 -150715445 + MIR SINE MIR 6 198 -64 3295 149 24 20 chrX 11884535 11885085 -150714845 + L1PB4 LINE L1 5603 6154 -2 1281 181 14 18 chrX 11885162 11885383 -150714547 + MER58A DNA MER1_type 5 224 0 342 300 138 6 chrX 11885394 11885554 -150714376 - MIR SINE MIR -79 183 3 2387 244 19 16 chrX 11885791 11886307 -150713623 - LTR40a LTR ERVL -1 518 1 515 350 94 31 chrX 11887485 11888070 -150711860 + L2 LINE L2 717 1338 -1976 379 228 269 13 chrX 11888095 11888244 -150711686 + L1MC4a LINE L1 5715 5901 -1907 3870 93 65 17 chrX 11888284 11888843 -150711087 + MER4-int LTR ERV1 1202 1796 -6324 2073 82 45 0 chrX 11888843 11889112 -150710818 + AluSg SINE Alu 17 297 -13 3870 93 65 17 chrX 11889112 11889188 -150710742 + MER4-int LTR ERV1 1796 1867 -6253 2730 157 40 56 chrX 11889203 11889927 -150710003 + MER4-int LTR ERV1 2349 4086 -2512 24 0 0 0 chrX 11889936 11889960 -150709970 + AT_rich Low_complexity Low_complexity 1 24 0 7332 114 15 11 chrX 11889960 11891403 -150708527 - L1MA2 LINE L1 -4 6300 4852 711 276 0 73 chrX 11891403 11891635 -150708295 + MIR SINE MIR 43 257 -5 2373 106 3 0 chrX 11891739 11892050 -150707880 + AluSx SINE Alu 1 312 0 2231 216 58 99 chrX 11892503 11893227 -150706703 + LTR8A LTR ERV1 34 727 0 906 187 16 50 chrX 11893229 11893411 -150706519 + MER45A DNA AcHobo 2 177 -1 243 57 0 57 chrX 11893795 11893848 -150706082 + (TTA)n Simple_repeat Simple_repeat 3 52 0 2264 112 0 3 chrX 11893856 11894160 -150705770 - AluSx SINE Alu -9 303 1 1211 54 0 0 chrX 11894281 11894428 -150705502 + AluY SINE Alu 146 292 -19 22 0 0 0 chrX 11895110 11895132 -150704798 + AT_rich Low_complexity Low_complexity 1 22 0 705 323 135 38 chrX 11895339 11895727 -150704203 + L2 LINE L2 983 1332 -1982 858 310 0 9 chrX 11895727 11895953 -150703977 + MER58A DNA MER1_type 1 224 0 705 323 135 38 chrX 11895953 11896997 -150702933 + L2 LINE L2 1332 2555 -759 215 302 16 0 chrX 11897144 11897207 -150702723 + MIR3 SINE MIR 126 189 -19 346 49 0 0 chrX 11897416 11897457 -150702473 + AluY SINE Alu 11 51 -250 736 292 59 33 chrX 11897562 11897903 -150702027 + L1MC4 LINE L1 7583 7990 -5 616 188 94 0 chrX 11898290 11898418 -150701512 - MER74A LTR ERVL 0 558 419 * 1132 176 0 6 chrX 11898413 11898595 -150701335 - MER74B LTR ERVL -361 261 81 318 162 270 0 chrX 11898635 11898709 -150701221 - MLT1F LTR MaLR -210 332 239 506 265 48 63 chrX 11899093 11899282 -150700648 - L2 LINE L2 0 3313 3128 2129 111 12 55 chrX 11899359 11899681 -150700249 - MER51B LTR ERV1 0 377 134 2901 85 3 0 chrX 11899681 11900035 -150699895 - THE1A LTR MaLR 0 355 1 2129 111 12 55 chrX 11900035 11900164 -150699766 - MER51B LTR ERV1 -243 134 1 260 294 60 72 chrX 11900197 11900432 -150699498 - L2 LINE L2 -2620 694 463 2251 98 0 23 chrX 11902756 11903063 -150696867 + AluSx SINE Alu 1 300 -12 1151 246 79 35 chrX 11903066 11903460 -150696470 - MLT1J LTR MaLR -98 413 3 904 146 0 0 chrX 11904137 11904274 -150695656 - FLAM_C SINE Alu -6 137 1 2250 118 0 0 chrX 11905848 11906145 -150693785 + AluSx SINE Alu 1 297 -15 1525 149 3 63 chrX 11906353 11906654 -150693276 + MER33 DNA MER1_type 20 302 -22 1621 199 16 6 chrX 11907025 11907337 -150692593 + MER61A LTR ERV1 1 315 -28 19684 135 89 78 chrX 11907554 11911790 -150688140 + L1P LINE L1 1 4283 -1863 7552 51 4 23 chrX 11911790 11912699 -150687231 + L1PA8 LINE L1 5269 6172 0 254 312 26 0 chrX 11913450 11913527 -150686403 + MIR SINE MIR 79 157 -105 3794 193 40 46 chrX 11913532 11913909 -150686021 + L1ME2 LINE L1 4901 5279 -885 2307 72 7 14 chrX 11913909 11914201 -150685729 + AluSq SINE Alu 1 290 -23 3794 193 40 46 chrX 11914201 11914844 -150685086 + L1ME2 LINE L1 5279 5901 -263 4130 120 38 65 chrX 11914844 11915554 -150684376 + LTR8 LTR ERV1 1 691 0 3794 193 40 46 chrX 11915554 11915808 -150684122 + L1ME2 LINE L1 5901 6155 -9 2226 81 0 7 chrX 11916259 11916574 -150683356 + AluSg1 SINE Alu 1 313 0 1563 177 92 16 chrX 11916939 11917256 -150682674 - MER58B DNA MER1_type 0 341 1 307 311 38 15 chrX 11917263 11917395 -150682535 + MIR SINE MIR 64 198 -64 3802 98 69 4 chrX 11917528 11918048 -150681882 - MER41A LTR ERV1 0 554 1 988 216 4 45 chrX 11919567 11919836 -150680094 + L1MB8 LINE L1 5915 6173 -5 208 319 121 32 chrX 11919882 11920039 -150679891 - L2 LINE L2 -508 2806 2636 869 152 13 0 chrX 11920242 11920393 -150679537 - L1M4 LINE L1 -676 5508 5356 1789 163 29 0 chrX 11920627 11920904 -150679026 - AluJb SINE Alu -27 285 1 1260 267 39 18 chrX 11921437 11921826 -150678104 - LTR16A LTR ERVL -29 421 25 454 227 67 0 chrX 11921834 11921953 -150677977 - L1MC4a LINE L1 -1942 5866 5740 7235 91 11 14 chrX 11921958 11922285 -150677645 - L1MA2 LINE L1 0 6304 5978 2071 89 67 7 chrX 11922285 11922567 -150677363 - AluSp SINE Alu -14 299 1 7235 91 11 14 chrX 11922567 11923278 -150676652 - L1MA2 LINE L1 -326 5978 5269 310 245 34 75 chrX 11923279 11923426 -150676504 - L1MC4a LINE L1 -2055 5753 5613 186 361 0 0 chrX 11923546 11923629 -150676301 - L2 LINE L2 -530 2784 2702 183 374 11 0 chrX 11923656 11923747 -150676183 - L2 LINE L2 -1156 2158 2067 1190 203 14 5 chrX 11925853 11926075 -150673855 + MER58A DNA MER1_type 1 224 0 795 137 7 43 chrX 11928107 11928246 -150671684 + MER20B DNA MER1_type 2 135 -84 480 216 105 39 chrX 11928422 11928575 -150671355 - MER103 DNA DNA -2 164 2 771 229 40 10 chrX 11928613 11928814 -150671116 + MER20B DNA MER1_type 546 752 -31 339 295 21 0 chrX 11928963 11929058 -150670872 - MIR3 SINE MIR -22 186 90 435 231 89 35 chrX 11929377 11929546 -150670384 + MARNA DNA Mariner 207 384 -202 1408 194 0 4 chrX 11930208 11930456 -150669474 - MER90 LTR ERV1 0 614 368 1244 172 74 39 chrX 11930458 11930668 -150669262 - MER90 LTR ERV1 -349 265 43 1765 98 27 0 chrX 11930668 11930892 -150669038 - MER30 DNA MER1_type 0 230 1 1244 172 74 39 chrX 11930892 11930937 -150668993 - MER90 LTR ERV1 -571 43 1 492 248 64 14 chrX 11930991 11931132 -150668798 - L1ME3A LINE L1 -61 6109 5962 2532 64 0 3 chrX 11931230 11931542 -150668388 + AluY SINE Alu 1 311 0 539 267 92 25 chrX 11931546 11931786 -150668144 - L1MC5 LINE L1 -460 7501 7246 931 195 158 7 chrX 11932449 11932721 -150667209 - LTR50 LTR ERVL -4 791 479 471 197 73 14 chrX 11932828 11932984 -150666946 - LTR50 LTR ERVL -585 210 1 734 269 60 30 chrX 11933697 11933965 -150665965 - L2 LINE L2 -9 3304 3029 1994 226 106 2 chrX 11933966 11934436 -150665494 + LTR40a LTR ERVL 1 519 0 1651 184 18 0 chrX 11934642 11934949 -150664981 + AluJb SINE Alu 1 312 0 13355 31 5 1 chrX 11935467 11937747 -150662183 - L1PA4 LINE L1 -3 6152 3867 1483 215 112 33 chrX 11937933 11938300 -150661630 - MSTD LTR MaLR 0 396 1 1967 146 17 7 chrX 11938544 11938846 -150661084 - AluSx SINE Alu -7 305 1 1682 184 28 0 chrX 11938860 11939180 -150660750 - L1MB7 LINE L1 -9 6175 5847 246 154 0 0 chrX 11939750 11939789 -150660141 + MLT2E LTR ERVL 10 48 -580 2511 148 45 30 chrX 11940565 11940991 -150658939 - MSTB1 LTR MaLR 0 432 1 1587 238 24 32 chrX 11941022 11941595 -150658335 - MLT2E LTR ERVL -8 620 6 928 183 24 0 chrX 11941893 11942057 -150657873 + MER58A DNA MER1_type 1 168 0 1022 211 148 78 chrX 11942199 11942612 -150657318 - MLT1J1 LTR MaLR -4 442 1 442 213 55 55 chrX 11942631 11942758 -150657172 - MIR SINE MIR -54 208 82 459 280 0 2 chrX 11943141 11943288 -150656642 - MER5A DNA MER1_type 0 189 9 387 0 0 0 chrX 11943643 11943686 -150656244 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 200 36 0 chrX 11943760 11943815 -150656115 + L1ME4a LINE L1 5971 6027 -94 532 324 71 63 chrX 11943914 11944281 -150655649 + L2 LINE L2 2899 3268 -4 1456 116 5 5 chrX 11945053 11945260 -150654670 - MER3 DNA MER1_type -2 207 1 1174 245 14 7 chrX 11946604 11946886 -150653044 + L1MCb LINE L1 814 1097 -4948 1696 165 3 30 chrX 11946890 11947193 -150652737 + AluJb SINE Alu 1 295 -17 1785 157 0 26 chrX 11947570 11947875 -150652055 - AluJo SINE Alu -15 297 1 190 292 45 34 chrX 11948176 11948265 -150651665 + MER5A DNA MER1_type 78 167 -22 23 68 0 0 chrX 11948768 11948812 -150651118 + AT_rich Low_complexity Low_complexity 1 44 0 652 147 62 70 chrX 11949165 11949294 -150650636 + FLAM_A SINE Alu 2 129 -4 1870 123 0 74 chrX 11950106 11950445 -150649485 + AluSx SINE Alu 1 316 0 4332 83 14 3 chrX 11950555 11951145 -150648785 + L1PB1 LINE L1 5524 6119 -32 186 419 43 0 chrX 11951708 11951801 -150648129 + L2 LINE L2 3150 3246 -26 710 196 0 95 chrX 11952047 11952215 -150647715 - MER5B DNA MER1_type -26 152 1 197 239 273 57 chrX 11952228 11952316 -150647614 - MER5A DNA MER1_type -6 183 77 519 324 72 24 chrX 11952316 11952566 -150647364 + L1MC4a LINE L1 5574 5835 -1973 1246 199 75 33 chrX 11952730 11953288 -150646642 - MER92B LTR ERV1 -15 621 1 2383 88 0 25 chrX 11953354 11953671 -150646259 + AluSx SINE Alu 1 309 -3 728 315 56 29 chrX 11954695 11955073 -150644857 + LTR16B LTR ERVL 7 394 -70 3117 127 16 12 chrX 11955073 11955584 -150644346 - L1 LINE L1 -1503 4643 4131 980 181 7 0 chrX 11957597 11957752 -150642178 + Tigger7 DNA MER2_type 1 156 -549 1624 160 19 0 chrX 11957784 11958047 -150641883 + Tigger7 DNA MER2_type 258 525 -1962 3074 134 41 21 chrX 11958050 11958277 -150641653 + Tigger7 DNA MER2_type 1769 1990 -497 288 0 0 0 chrX 11958277 11958309 -150641621 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3074 134 41 21 chrX 11958309 11958595 -150641335 + Tigger7 DNA MER2_type 1990 2292 -195 345 185 0 0 chrX 11958600 11958654 -150641276 + Tigger7 DNA MER2_type 2397 2450 -41 25 0 0 0 chrX 11959879 11959904 -150640026 + AT_rich Low_complexity Low_complexity 1 25 0 1718 183 26 54 chrX 11960128 11960254 -150639676 + MER58B DNA MER1_type 1 129 -2291 2129 107 3 58 chrX 11960254 11960581 -150639349 - AluSx SINE Alu -3 309 1 1718 183 26 54 chrX 11960581 11960804 -150639126 + MER58B DNA MER1_type 129 340 -1 587 282 107 30 chrX 11961850 11962148 -150637782 + LTR16C LTR ERVL 168 488 -3 1872 100 29 0 chrX 11962206 11962485 -150637445 + L1MA8 LINE L1 6002 6288 -3 22 0 0 0 chrX 11962491 11962513 -150637417 + AT_rich Low_complexity Low_complexity 1 22 0 638 269 96 80 chrX 11962536 11962985 -150636945 - Charlie8 DNA MER1_type -1926 491 36 370 231 116 54 chrX 11963508 11963750 -150636180 + L1MC5 LINE L1 7677 7933 -28 497 279 27 0 chrX 11964432 11964579 -150635351 + MIR SINE MIR 40 190 -72 1082 172 30 5 chrX 11964600 11964803 -150635127 - LTR37A LTR ERV1 -218 208 1 1999 155 0 3 chrX 11964991 11965275 -150634655 + AluJo SINE Alu 1 283 -29 7848 109 7 0 chrX 11966007 11967075 -150632855 - HSMAR2 DNA Mariner -1 1301 227 1298 143 31 45 chrX 11967075 11967299 -150632631 - AluJb SINE Alu -6 306 86 1074 94 137 57 chrX 11967301 11967429 -150632501 - HSMAR2 DNA Mariner -1072 230 76 2203 109 3 0 chrX 11967429 11967735 -150632195 + AluSp SINE Alu 1 307 0 1074 94 137 57 chrX 11967735 11967817 -150632113 - HSMAR2 DNA Mariner -1226 76 2 368 245 158 0 chrX 11968241 11968380 -150631550 + L2 LINE L2 3152 3312 -1 261 0 0 0 chrX 11968935 11968964 -150630966 + (TG)n Simple_repeat Simple_repeat 1 29 0 274 241 17 0 chrX 11969017 11969075 -150630855 - MLT1K LTR MaLR 0 588 530 215 266 22 49 chrX 11969186 11969370 -150630560 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 342 288 6 0 chrX 11969521 11969662 -150630268 + (TA)n Simple_repeat Simple_repeat 2 146 -19 565 93 13 0 chrX 11969662 11969737 -150630193 - MADE1 DNA Mariner -3 77 2 342 288 6 0 chrX 11969737 11969758 -150630172 + (TA)n Simple_repeat Simple_repeat 146 165 0 13076 102 119 70 chrX 11970255 11970374 -150629556 - Tigger1 DNA MER2_type 0 2418 2306 2281 53 0 21 chrX 11970374 11970657 -150629273 + AluY SINE Alu 23 299 -12 13076 102 119 70 chrX 11970657 11971419 -150628511 - Tigger1 DNA MER2_type -112 2306 1584 825 152 15 8 chrX 11971419 11971551 -150628379 - FLAM_C SINE Alu -10 133 1 13076 102 119 70 chrX 11971551 11972838 -150627092 - Tigger1 DNA MER2_type -834 1584 3 380 291 37 22 chrX 11972842 11972976 -150626954 - MIR3 SINE MIR -70 138 3 335 248 79 40 chrX 11973257 11973358 -150626572 + L2 LINE L2 3167 3271 -1 508 296 87 10 chrX 11974123 11974319 -150625611 + MIR SINE MIR 46 256 -6 192 302 0 0 chrX 11974569 11974622 -150625308 + L2 LINE L2 3206 3258 -14 226 263 0 26 chrX 11974622 11974698 -150625232 + GA-rich Low_complexity Low_complexity 4 77 0 225 286 14 0 chrX 11975056 11975126 -150624804 + MIR SINE MIR 83 153 -55 833 218 47 6 chrX 11975134 11975304 -150624626 + MER5B DNA MER1_type 2 178 0 494 230 171 13 chrX 11975336 11975488 -150624442 + MER5A DNA MER1_type 14 189 0 183 143 0 0 chrX 11975568 11975596 -150624334 + MIR SINE MIR 217 244 -18 1360 264 91 22 chrX 11976330 11976780 -150623150 + LTR16C LTR ERVL 11 491 0 528 242 81 43 chrX 11977008 11977211 -150622719 + MIR SINE MIR 16 229 -33 233 224 45 15 chrX 11977269 11977336 -150622594 - MLT1L LTR MaLR -11 604 536 377 227 30 49 chrX 11977730 11977860 -150622070 - MLT1H LTR MaLR -254 210 94 808 265 19 14 chrX 11979501 11979712 -150620218 - MIR SINE MIR -36 226 15 974 167 4 84 chrX 11979803 11979956 -150619974 - MER20 DNA MER1_type -3 216 85 189 0 0 0 chrX 11979956 11979977 -150619953 + (CCA)n Simple_repeat Simple_repeat 1 21 0 974 167 4 84 chrX 11979977 11980050 -150619880 - MER20 DNA MER1_type -134 85 8 1298 171 68 39 chrX 11981032 11981342 -150618588 + MER33 DNA MER1_type 6 324 0 1972 208 97 16 chrX 11981639 11982091 -150617839 - MLT1D LTR MaLR -16 489 1 323 296 82 22 chrX 11982464 11982599 -150617331 - MIR SINE MIR -36 226 84 1203 230 173 0 chrX 11982811 11983141 -150616789 - LTR16C LTR ERVL -2 489 103 1060 156 30 18 chrX 11983307 11983506 -150616424 + MLT1B LTR MaLR 1 193 -181 333 0 0 0 chrX 11983956 11983993 -150615937 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1967 94 4 0 chrX 11983993 11984237 -150615693 + AluSp SINE Alu 1 245 -68 1682 101 0 0 chrX 11984256 11984483 -150615447 + MLT1B LTR MaLR 164 390 0 1732 234 81 13 chrX 11984687 11984903 -150615027 - MLT1J LTR MaLR -20 491 291 2766 122 41 19 chrX 11984903 11985321 -150614609 - MSTA LTR MaLR -1 427 1 1732 234 81 13 chrX 11985321 11985562 -150614368 - MLT1J LTR MaLR -220 291 3 256 267 0 89 chrX 11985581 11985671 -150614259 - MIR SINE MIR -115 147 66 300 212 0 15 chrX 11986026 11986092 -150613838 + L2 LINE L2 3208 3272 0 189 0 0 0 chrX 11986143 11986164 -150613766 + (TA)n Simple_repeat Simple_repeat 2 22 0 248 221 35 71 chrX 11986164 11986277 -150613653 - L1MC4 LINE L1 -1339 6703 6595 236 111 22 0 chrX 11986284 11986329 -150613601 + (TA)n Simple_repeat Simple_repeat 1 46 0 343 177 62 68 chrX 11986764 11986912 -150613018 + HsTC2 DNA Tc2 589 1892 -6 608 151 55 116 chrX 11987015 11987065 -150612865 - MLT1F LTR MaLR -2 565 513 6486 20 7 0 chrX 11987065 11987794 -150612136 + L1PA4 LINE L1 5434 6167 0 608 151 55 116 chrX 11987794 11987888 -150612042 - MLT1F LTR MaLR -54 513 429 247 91 0 0 chrX 11987895 11987928 -150612002 - L1MC1 LINE L1 -16 6317 6285 4147 101 4 0 chrX 11987940 11988495 -150611435 - L1PA13 LINE L1 -7 6156 5600 231 0 0 0 chrX 11988544 11988569 -150611361 - L1PA13 LINE L1 -564 5597 5573 1478 191 42 3 chrX 11988570 11988922 -150611008 - MLT1F LTR MaLR -125 417 53 551 252 28 23 chrX 11989022 11989240 -150610690 + AluSx SINE Alu 52 270 -42 767 231 74 81 chrX 11989242 11989451 -150610479 - LTR40a LTR ERVL -223 296 88 2419 77 0 13 chrX 11989451 11989764 -150610166 + AluSg1 SINE Alu 1 309 0 767 231 74 81 chrX 11989764 11989852 -150610078 - LTR40a LTR ERVL -431 88 1 180 45 136 68 chrX 11990123 11990167 -150609763 - L2 LINE L2 -936 2378 2332 228 329 112 53 chrX 11991233 11991403 -150608527 + MARNA DNA Mariner 88 267 -319 1453 224 54 38 chrX 11991404 11991903 -150608027 + L1ME3A LINE L1 5621 6165 -5 2284 92 0 10 chrX 11993440 11993733 -150606197 + AluSx SINE Alu 2 291 -21 25 31 0 0 chrX 11993737 11993769 -150606161 + AT_rich Low_complexity Low_complexity 1 32 0 2778 108 14 0 chrX 11994485 11994855 -150605075 - THE1C LTR MaLR 0 375 1 243 0 0 0 chrX 11995357 11995384 -150604546 + (A)n Simple_repeat Simple_repeat 1 27 0 874 168 168 0 chrX 11996549 11996716 -150603214 + MER3 DNA MER1_type 15 209 0 809 217 128 66 chrX 11997171 11997570 -150602360 + MER57A LTR ERV1 1 403 0 3209 113 19 33 chrX 11997588 11998056 -150601874 + MER31A LTR ERV1 4 466 -19 2399 75 0 3 chrX 11998056 11998348 -150601582 - AluSc SINE Alu -18 291 1 3209 113 19 33 chrX 11998348 11998366 -150601564 + MER31A LTR ERV1 466 483 -2 1223 164 38 26 chrX 11998410 11998783 -150601147 + MER90 LTR ERV1 3 451 -163 1422 146 84 18 chrX 12000135 12000448 -150599482 + MER33 DNA MER1_type 1 324 0 1049 210 32 23 chrX 12000456 12000675 -150599255 + MER58A DNA MER1_type 2 222 -2 554 214 90 7 chrX 12000741 12000886 -150599044 - MIR SINE MIR -15 247 91 219 36 0 0 chrX 12000991 12001019 -150598911 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 241 266 75 43 chrX 12001380 12001474 -150598456 + MIR SINE MIR 95 191 -71 451 220 44 88 chrX 12001815 12001974 -150597956 - MER5B DNA MER1_type -25 153 2 193 276 69 102 chrX 12002069 12002315 -150597615 - L2 LINE L2 -507 2807 2570 231 247 278 0 chrX 12002402 12002499 -150597431 + L2 LINE L2 3185 3308 -5 3340 125 6 4 chrX 12002685 12003182 -150596748 + L1MB3 LINE L1 5568 6065 -118 740 247 139 46 chrX 12003346 12003645 -150596285 + L1ME4a LINE L1 5600 5961 -160 2792 123 21 86 chrX 12003645 12003688 -150596242 + L1MB7 LINE L1 5651 5695 -489 2382 96 0 0 chrX 12003688 12003990 -150595940 + AluSx SINE Alu 1 302 -10 2792 123 21 86 chrX 12003990 12004516 -150595414 + L1MB7 LINE L1 5695 6183 -1 740 247 139 46 chrX 12004516 12004690 -150595240 + L1ME4a LINE L1 5961 6117 -4 444 125 0 125 chrX 12005739 12005789 -150594141 - L1MB2 LINE L1 -3 6168 6136 2241 105 7 3 chrX 12005789 12006085 -150593845 - AluSc SINE Alu -12 297 1 444 125 0 125 chrX 12006085 12006138 -150593792 - L1MB2 LINE L1 -35 6136 6078 785 243 118 47 chrX 12006246 12006420 -150593510 - L1ME4a LINE L1 -4 6117 5957 3056 137 47 40 chrX 12006420 12006991 -150592939 - L1MB7 LINE L1 -1 6183 5609 2388 89 3 0 chrX 12007001 12007303 -150592627 - AluY SINE Alu -8 303 1 785 243 118 47 chrX 12007303 12007583 -150592347 - L1ME4a LINE L1 -172 5949 5619 22 0 0 0 chrX 12007923 12007945 -150591985 + AT_rich Low_complexity Low_complexity 1 22 0 242 256 281 16 chrX 12009968 12010089 -150589841 + MER5A DNA MER1_type 31 183 -6 784 237 17 28 chrX 12010111 12010288 -150589642 + MER5B DNA MER1_type 3 177 -1 320 257 66 21 chrX 12010300 12010451 -150589479 - MIR SINE MIR -65 143 36 261 0 0 0 chrX 12010686 12010715 -150589215 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2300 100 7 0 chrX 12011608 12011908 -150588022 + AluSq SINE Alu 1 302 -11 2139 105 3 40 chrX 12012122 12012446 -150587484 - AluJb SINE Alu 0 312 1 804 286 81 31 chrX 12012476 12012833 -150587097 - L2 LINE L2 -361 2953 2579 1809 153 47 0 chrX 12013481 12013755 -150586175 + AluJb SINE Alu 1 287 -25 338 293 88 7 chrX 12013965 12014112 -150585818 - L2 LINE L2 -156 3116 2958 508 242 203 0 chrX 12014117 12014270 -150585660 - MIR SINE MIR -30 232 49 2027 115 0 17 chrX 12014693 12015006 -150584924 - AluSx SINE Alu 0 308 1 2253 110 0 0 chrX 12015945 12016237 -150583693 + AluSx SINE Alu 1 292 -20 697 114 114 29 chrX 12016245 12016385 -150583545 + L1MB8 LINE L1 6027 6178 0 343 233 83 0 chrX 12016858 12016951 -150582979 + MER5A DNA MER1_type 10 98 -80 202 322 11 22 chrX 12016973 12017063 -150582867 + L2 LINE L2 1444 1532 -1782 2111 230 94 26 chrX 12017091 12017708 -150582222 + L2 LINE L2 1885 2543 -771 4079 182 5 89 chrX 12017708 12017904 -150582026 + L1MB8 LINE L1 5308 5519 -659 207 0 0 0 chrX 12017904 12017927 -150582003 + (CA)n Simple_repeat Simple_repeat 2 24 0 4079 182 5 89 chrX 12017927 12018033 -150581897 + L1MB8 LINE L1 5519 5632 -546 2444 41 3 7 chrX 12018033 12018323 -150581607 - AluY SINE Alu -22 289 1 4079 182 5 89 chrX 12018323 12018970 -150580960 + L1MB8 LINE L1 5632 6178 0 1484 214 27 93 chrX 12018970 12019446 -150580484 + L2 LINE L2 2536 2971 -342 1762 174 0 10 chrX 12019446 12019740 -150580190 - AluJb SINE Alu -21 291 1 1484 214 27 93 chrX 12019740 12019821 -150580109 + L2 LINE L2 2971 3056 -257 2183 114 0 13 chrX 12019851 12020159 -150579771 - AluSg SINE Alu -6 304 1 6497 19 0 0 chrX 12020169 12020867 -150579063 - L1PA3 LINE L1 0 6155 5458 453 0 0 0 chrX 12020867 12020918 -150579012 + L1P LINE L1 5235 5285 -861 2325 82 3 0 chrX 12020920 12021211 -150578719 - AluY SINE Alu -17 294 3 879 209 29 38 chrX 12021342 12021552 -150578378 - MER3 DNA MER1_type -1 208 1 2425 109 73 3 chrX 12021631 12021971 -150577959 - THE1B LTR MaLR 0 364 1 2341 112 0 0 chrX 12022034 12022346 -150577584 - AluSx SINE Alu 0 312 1 1063 257 26 48 chrX 12022958 12023269 -150576661 - MLT1I LTR MaLR -2 407 104 10644 45 6 1 chrX 12023425 12025434 -150574496 - L1PA5 LINE L1 -3 6151 4139 186 133 0 0 chrX 12025968 12025998 -150573932 + (CA)n Simple_repeat Simple_repeat 1 30 0 1626 134 107 8 chrX 12026006 12026268 -150573662 - AluSx SINE Alu -24 288 1 1481 180 12 26 chrX 12026713 12026993 -150572937 + L1MB7 LINE L1 5876 6120 -64 2595 56 0 0 chrX 12027537 12027843 -150572087 - AluY SINE Alu -5 306 1 487 187 28 9 chrX 12027912 12028019 -150571911 - L2 LINE L2 -3 3310 3202 2034 111 17 14 chrX 12028036 12028518 -150571412 - AluSx SINE Alu 0 312 1 5461 13 3 0 chrX 12028554 12029348 -150570582 + L1PA3 LINE L1 5073 5868 -287 1082 274 124 53 chrX 12029565 12030241 -150569689 + L2 LINE L2 2146 2869 -445 822 192 26 0 chrX 12030271 12030427 -150569503 + LTR16C LTR ERVL 332 491 0 2483 75 3 0 chrX 12031387 12031695 -150568235 - AluY SINE Alu -2 309 1 281 307 13 0 chrX 12032949 12033024 -150566906 + L2 LINE L2 3238 3313 0 336 222 22 44 chrX 12033086 12033176 -150566754 + MIR3 SINE MIR 111 198 -10 779 268 10 10 chrX 12033238 12033447 -150566483 + LTR16B LTR ERVL 1 209 -255 821 263 61 12 chrX 12033477 12033724 -150566206 - MIR SINE MIR 0 262 4 987 314 79 83 chrX 12033731 12034307 -150565623 + L2 LINE L2 1963 2540 -732 189 0 0 0 chrX 12034307 12034328 -150565602 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 987 314 79 83 chrX 12034328 12035006 -150564924 + L2 LINE L2 2540 3221 -51 4900 156 32 12 chrX 12035538 12035851 -150564079 + L1MB7 LINE L1 5287 5592 -592 1775 152 118 9 chrX 12035851 12036180 -150563750 - MLT1A1 LTR MaLR 0 365 1 4900 156 32 12 chrX 12036180 12036727 -150563203 + L1MB7 LINE L1 5592 6165 -19 1270 141 33 50 chrX 12036826 12037068 -150562862 - L1MA4A LINE L1 -2 6301 6064 408 302 47 0 chrX 12037249 12037355 -150562575 + L2 LINE L2 3147 3257 -15 1109 161 43 0 chrX 12037389 12037575 -150562355 + MER20 DNA MER1_type 25 218 -1 1556 190 77 3 chrX 12038110 12038420 -150561510 + MER58B DNA MER1_type 9 341 0 241 276 197 0 chrX 12038465 12038592 -150561338 + MIR3 SINE MIR 34 185 -23 340 239 117 49 chrX 12040421 12040584 -150559346 + MIR SINE MIR 76 249 -13 21 36 0 0 chrX 12041696 12041724 -150558206 + AT_rich Low_complexity Low_complexity 1 28 0 192 360 73 33 chrX 12041908 12042058 -150557872 - L2 LINE L2 0 3272 3117 2256 112 7 0 chrX 12042393 12042697 -150557233 - AluSx SINE Alu -6 306 1 1041 240 80 0 chrX 12042827 12043102 -150556828 - LTR16A1 LTR ERVL 0 457 161 310 204 174 20 chrX 12043719 12043817 -150556113 - L2 LINE L2 -1 3312 3200 183 42 0 0 chrX 12043828 12043852 -150556078 + (CAT)n Simple_repeat Simple_repeat 1 24 0 207 69 0 0 chrX 12044615 12044644 -150555286 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chrX 12044763 12044793 -150555137 + AT_rich Low_complexity Low_complexity 1 30 0 393 277 87 39 chrX 12044928 12045193 -150554737 - L1MC4a LINE L1 -346 5775 5588 1957 145 3 0 chrX 12045205 12045501 -150554429 - AluJo SINE Alu -15 297 1 229 209 23 0 chrX 12045583 12045623 -150554307 + MER20 DNA MER1_type 1 41 -178 594 168 6 95 chrX 12045623 12045719 -150554211 - MER53 DNA DNA -2 187 113 1037 94 13 184 chrX 12045719 12045952 -150553978 + 7SK RNA RNA 1 193 0 594 168 6 95 chrX 12045952 12046034 -150553896 - MER53 DNA DNA -76 113 25 685 182 130 19 chrX 12046035 12046189 -150553741 - AluJo SINE Alu -21 291 121 865 157 116 23 chrX 12046213 12046385 -150553545 + MER20 DNA MER1_type 32 219 0 1018 211 73 0 chrX 12046446 12046650 -150553280 + MER20 DNA MER1_type 1 219 0 2269 100 0 0 chrX 12046988 12047277 -150552653 + AluSx SINE Alu 5 293 -19 21 0 0 0 chrX 12048005 12048026 -150551904 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chrX 12048041 12048074 -150551856 + (TTG)n Simple_repeat Simple_repeat 2 34 0 402 267 182 0 chrX 12048074 12048250 -150551680 - L1ME4a LINE L1 -45 6076 5869 363 145 34 34 chrX 12048262 12048441 -150551489 + (TA)n Simple_repeat Simple_repeat 1 179 0 1778 247 70 7 chrX 12048679 12049299 -150550631 - L1ME3A LINE L1 0 6170 5494 281 45 0 45 chrX 12049715 12049759 -150550171 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1007 305 30 129 chrX 12049764 12050098 -150549832 - AluSx SINE Alu 0 302 2 1037 110 23 75 chrX 12050130 12050303 -150549627 + AluSq SINE Alu 6 169 -144 1310 148 80 8 chrX 12050322 12050559 -150549371 - L1MB5 LINE L1 -6 6168 5915 438 209 55 0 chrX 12051989 12052080 -150547850 - MLT1L LTR MaLR -180 435 340 371 91 227 0 chrX 12052920 12052986 -150546944 - LTR16C LTR ERVL 0 491 411 400 262 52 52 chrX 12053119 12053329 -150546601 - LTR16C LTR ERVL -149 342 133 327 133 0 0 chrX 12054061 12054106 -150545824 + FLAM SINE Alu 81 125 -8 1606 175 10 29 chrX 12054120 12054428 -150545502 + AluJo SINE Alu 1 302 -10 258 272 25 0 chrX 12057323 12057404 -150542526 + CT-rich Low_complexity Low_complexity 2 84 0 453 173 0 0 chrX 12057594 12057675 -150542255 - MLT1I LTR MaLR -2 407 327 343 224 75 37 chrX 12057917 12058024 -150541906 - MLT1J2 LTR MaLR -62 388 233 255 240 31 52 chrX 12058129 12058225 -150541705 - MLT1I LTR MaLR -313 96 3 2247 112 0 13 chrX 12058299 12058613 -150541317 + AluSx SINE Alu 1 310 -2 292 317 236 18 chrX 12058934 12059316 -150540614 + L3 LINE CR1 1113 1577 0 192 151 151 27 chrX 12059642 12059715 -150540215 + MIR SINE MIR 77 158 -104 970 247 28 4 chrX 12059827 12060082 -150539848 + LTR16C LTR ERVL 231 491 0 263 230 40 40 chrX 12060089 12060189 -150539741 + MIR SINE MIR 163 262 0 5540 51 12 10 chrX 12060918 12061589 -150538341 - SVA Other Other 0 1386 715 2011 121 3 3 chrX 12061741 12062023 -150537907 + AluSx SINE Alu 1 282 -30 281 67 0 22 chrX 12062024 12062069 -150537861 + (TA)n Simple_repeat Simple_repeat 2 45 0 676 262 25 74 chrX 12062369 12062613 -150537317 + MIR SINE MIR 20 251 -11 614 316 107 0 chrX 12062881 12063106 -150536824 - MIR SINE MIR 0 262 14 2290 99 0 13 chrX 12063628 12063930 -150536000 - AluSx SINE Alu -14 298 1 25 0 0 0 chrX 12065005 12065030 -150534900 + AT_rich Low_complexity Low_complexity 1 25 0 2309 112 0 0 chrX 12065206 12065519 -150534411 + AluSq SINE Alu 1 313 0 348 277 89 0 chrX 12065547 12065648 -150534282 + MIR3 SINE MIR 58 167 -41 1869 5 0 0 chrX 12065738 12065937 -150533993 - AluYb8 SINE Alu -9 309 111 435 99 56 0 chrX 12066127 12066198 -150533732 - MER116 DNA Mariner -5 75 1 1964 208 86 64 chrX 12068486 12069021 -150530909 - MLT1H LTR MaLR 0 549 3 291 343 48 0 chrX 12069845 12069974 -150529956 + MIR SINE MIR 38 170 -66 1777 209 9 6 chrX 12069977 12070316 -150529614 - LTR16C LTR ERVL 0 491 152 543 257 39 113 chrX 12070336 12070620 -150529310 - LTR16C LTR ERVL -158 333 71 852 202 53 21 chrX 12071487 12071675 -150528255 - MER58A DNA MER1_type 0 224 31 1862 154 3 20 chrX 12071950 12072256 -150527674 + AluJo SINE Alu 1 301 -11 23 0 0 0 chrX 12072382 12072405 -150527525 + AT_rich Low_complexity Low_complexity 1 23 0 2048 89 22 11 chrX 12072414 12072684 -150527246 - AluSg SINE Alu -1 309 37 593 146 0 0 chrX 12074345 12074434 -150525496 + AluJo SINE Alu 45 133 -179 2368 90 0 34 chrX 12074439 12074760 -150525170 + AluSx SINE Alu 1 310 -2 1195 172 0 0 chrX 12074772 12074964 -150524966 + AluJo SINE Alu 121 312 0 422 142 92 3 chrX 12075094 12075229 -150524701 - MER53 DNA DNA -4 185 1 3611 178 30 8 chrX 12076732 12077322 -150522608 - MER77 LTR ERV1 -2 603 1 215 349 46 49 chrX 12077342 12077581 -150522349 - L2 LINE L2 -1303 2011 1772 2172 100 23 16 chrX 12077581 12077890 -150522040 + AluSp SINE Alu 1 311 -2 215 349 46 49 chrX 12077890 12077934 -150521996 - L2 LINE L2 -1542 1772 1729 1967 124 17 33 chrX 12080548 12080847 -150519083 + AluSx SINE Alu 1 294 -18 21 0 0 0 chrX 12080847 12080868 -150519062 + AT_rich Low_complexity Low_complexity 1 21 0 287 47 27 5 chrX 12081197 12081246 -150518684 + AluY SINE Alu 1 36 -265 276 128 0 0 chrX 12081237 12081284 -150518646 + AluSc SINE Alu 253 299 0 * 2608 41 0 13 chrX 12081338 12081653 -150518277 - AluY SINE Alu 0 311 1 923 158 0 0 chrX 12082841 12082974 -150516956 - FLAM_C SINE Alu 0 133 1 24 32 0 0 chrX 12083284 12083315 -150516615 + AT_rich Low_complexity Low_complexity 1 31 0 530 195 78 23 chrX 12083538 12083666 -150516264 + MLT1H LTR MaLR 415 549 0 1869 162 0 16 chrX 12083768 12084076 -150515854 + AluJb SINE Alu 1 303 -9 748 249 90 92 chrX 12084242 12084676 -150515254 + MLT1J LTR MaLR 1 433 -78 593 341 188 26 chrX 12084948 12085899 -150514031 + L2 LINE L2 165 1269 -2045 4657 64 37 23 chrX 12085963 12086985 -150512945 - MER11A LTR ERVK 0 1266 1 617 213 46 60 chrX 12087739 12087955 -150511975 + L1MC5 LINE L1 7603 7815 -146 912 238 19 5 chrX 12087969 12088175 -150511755 - MER58A DNA MER1_type -15 209 1 316 245 69 20 chrX 12088178 12088280 -150511650 + L1MC5 LINE L1 7807 7913 -48 2221 135 0 0 chrX 12088375 12088679 -150511251 - AluSx SINE Alu -8 304 1 211 200 93 53 chrX 12089000 12089075 -150510855 + MIR SINE MIR 89 166 -96 225 336 33 16 chrX 12089256 12089378 -150510552 - L1MC/D LINE L1 -2212 5596 5473 2127 118 11 0 chrX 12089834 12090121 -150509809 - AluSx SINE Alu -22 290 1 8068 29 0 2 chrX 12090232 12091702 -150508228 + L1PA4 LINE L1 4689 6155 0 378 287 0 0 chrX 12091764 12091851 -150508079 - LTR40a LTR ERVL -4 515 429 1112 165 5 20 chrX 12091856 12092056 -150507874 + AluSx SINE Alu 1 197 -115 228 0 0 75 chrX 12092157 12092197 -150507733 + L1PA3 LINE L1 6119 6155 0 189 94 0 0 chrX 12092215 12092247 -150507683 + (A)n Simple_repeat Simple_repeat 1 32 0 950 266 135 35 chrX 12092263 12092774 -150507156 - L1MC/D LINE L1 -1794 4352 3791 202 313 173 0 chrX 12094078 12094327 -150505603 + L2 LINE L2 2947 3238 -75 319 189 176 0 chrX 12094446 12094520 -150505410 + L2 LINE L2 3186 3272 0 22 56 0 0 chrX 12095106 12095142 -150504788 + AT_rich Low_complexity Low_complexity 1 36 0 2347 81 0 13 chrX 12095578 12095876 -150504054 - AluSg SINE Alu -16 294 1 1629 154 0 26 chrX 12097111 12097384 -150502546 - L1PA15 LINE L1 -7 6158 5893 405 284 78 64 chrX 12099562 12099780 -150500150 - MIR SINE MIR -12 250 30 823 129 14 61 chrX 12099780 12099927 -150500003 + MER20 DNA MER1_type 2 141 -78 30 27 0 0 chrX 12099927 12099964 -150499966 + AT_rich Low_complexity Low_complexity 1 37 0 593 132 22 0 chrX 12099964 12100055 -150499875 + MER20 DNA MER1_type 126 218 -1 2592 71 0 0 chrX 12100222 12100530 -150499400 + AluSg SINE Alu 1 308 -2 1793 136 22 51 chrX 12100863 12101179 -150498751 + AluJo SINE Alu 1 307 -5 1176 224 110 0 chrX 12103296 12103551 -150496379 - MER119 DNA MER1_type -300 283 1 379 315 134 33 chrX 12103952 12104228 -150495702 - HAL1 LINE L1 -2199 308 5 221 374 10 0 chrX 12104484 12104583 -150495347 - L2 LINE L2 -942 2372 2273 236 277 44 9 chrX 12104861 12104951 -150494979 + MIR SINE MIR 46 137 -71 1861 141 0 51 chrX 12104968 12105280 -150494650 + AluJo SINE Alu 1 296 -16 225 222 93 37 chrX 12105469 12105577 -150494353 - L2 LINE L2 -1350 1964 1851 1107 153 63 5 chrX 12106769 12106959 -150492971 - MER3 DNA MER1_type 0 209 9 297 75 0 0 chrX 12107015 12107055 -150492875 + (T)n Simple_repeat Simple_repeat 1 40 0 248 333 75 8 chrX 12108461 12108581 -150491349 - L2 LINE L2 -227 3045 2918 23 0 0 0 chrX 12108682 12108705 -150491225 + AT_rich Low_complexity Low_complexity 1 23 0 2012 128 21 3 chrX 12108801 12109091 -150490839 - AluJb SINE Alu -17 295 1 1780 121 132 53 chrX 12109599 12109616 -150490314 - L1MB7 LINE L1 -31 6153 6139 2067 141 0 3 chrX 12109616 12109913 -150490017 - AluJb SINE Alu -16 296 1 1780 121 132 53 chrX 12109913 12110275 -150489655 - L1MB7 LINE L1 -45 6139 5744 265 163 0 0 chrX 12111710 12111753 -150488177 + L2 LINE L2 3262 3304 -9 450 256 31 8 chrX 12112056 12112185 -150487745 + MIR SINE MIR 7 138 -124 181 283 19 0 chrX 12112638 12112691 -150487239 - L2 LINE L2 0 3272 3219 * 268 288 91 8 chrX 12112674 12112806 -150487124 - MIR SINE MIR -31 231 89 2242 118 0 16 chrX 12113448 12113761 -150486169 - AluSx SINE Alu -4 308 1 21 36 0 0 chrX 12113958 12113986 -150485944 + AT_rich Low_complexity Low_complexity 1 28 0 2121 95 13 36 chrX 12115236 12115540 -150484390 - AluSx SINE Alu -15 297 1 678 193 199 11 chrX 12115903 12116079 -150483851 - MER3 DNA MER1_type 0 209 1 469 237 81 50 chrX 12116130 12116328 -150483602 + L1MC5 LINE L1 7723 7926 -35 1842 155 10 7 chrX 12116881 12117178 -150482752 + AluJo SINE Alu 1 298 -14 232 318 106 0 chrX 12117270 12117355 -150482575 + MIR SINE MIR 6 99 -163 181 105 26 53 chrX 12117395 12117433 -150482497 + MIR SINE MIR 212 248 -14 1843 96 118 0 chrX 12119538 12119810 -150480120 + AluSc SINE Alu 1 304 -5 22 0 0 0 chrX 12121720 12121742 -150478188 + AT_rich Low_complexity Low_complexity 1 22 0 1001 139 32 0 chrX 12121803 12121961 -150477969 + AluSp SINE Alu 137 299 -14 2270 116 0 3 chrX 12122009 12122319 -150477611 + AluSx SINE Alu 1 309 -3 2189 93 21 10 chrX 12122377 12122667 -150477263 + AluSg SINE Alu 1 293 -17 2451 73 7 0 chrX 12122705 12123005 -150476925 + AluSg SINE Alu 1 302 -8 2265 100 7 0 chrX 12124032 12124322 -150475608 + AluSx SINE Alu 1 292 -20 270 0 0 0 chrX 12125876 12125906 -150474024 + (A)n Simple_repeat Simple_repeat 1 30 0 2237 98 11 0 chrX 12126301 12126588 -150473342 + AluSq SINE Alu 1 290 -23 2114 172 102 19 chrX 12126613 12127043 -150472887 + MLT1C LTR MaLR 1 466 -1 2164 127 0 3 chrX 12127715 12128014 -150471916 + AluSx SINE Alu 1 298 -14 2056 141 0 3 chrX 12129585 12129884 -150470046 + AluJb SINE Alu 1 298 -14 801 271 45 0 chrX 12130043 12130264 -150469666 + MIR SINE MIR 25 255 -7 664 212 7 0 chrX 12130661 12130798 -150469132 + MER58B DNA MER1_type 196 333 -8 234 0 0 0 chrX 12131050 12131076 -150468854 + (A)n Simple_repeat Simple_repeat 1 26 0 780 145 172 59 chrX 12131523 12131623 -150468307 + MER3 DNA MER1_type 3 90 -119 2149 72 18 96 chrX 12131623 12131956 -150467974 + AluYb8 SINE Alu 1 307 -11 780 145 172 59 chrX 12131956 12132041 -150467889 + MER3 DNA MER1_type 90 209 0 1810 122 0 0 chrX 12132064 12132309 -150467621 - AluSx SINE Alu -67 245 1 1148 198 61 49 chrX 12132632 12132960 -150466970 + MLT1D LTR MaLR 7 338 -167 31 0 0 0 chrX 12133230 12133261 -150466669 + AT_rich Low_complexity Low_complexity 1 31 0 39417 78 10 9 chrX 12133474 12138468 -150461462 + L1PA6 LINE L1 11 5009 -1145 2273 114 3 0 chrX 12138468 12138776 -150461154 + AluSp SINE Alu 1 309 -4 39417 78 10 9 chrX 12138776 12139923 -150460007 + L1PA6 LINE L1 5009 6154 0 210 372 97 26 chrX 12139930 12140043 -150459887 + L3 LINE CR1 21 141 -1436 199 319 0 28 chrX 12140151 12140223 -150459707 - MIR SINE MIR -10 252 183 361 274 44 9 chrX 12140415 12140528 -150459402 + L2 LINE L2 3191 3307 -6 1231 303 94 61 chrX 12140530 12141263 -150458667 + L3 LINE CR1 520 1284 -293 711 244 52 36 chrX 12141263 12141456 -150458474 + MER117 DNA MER1_type 2 197 0 1231 303 94 61 chrX 12141456 12141528 -150458402 + L3 LINE CR1 1284 1352 -225 1130 188 48 0 chrX 12142933 12143140 -150456790 + MER20 DNA MER1_type 3 219 0 313 251 80 31 chrX 12144774 12144937 -150454993 - L1ME4a LINE L1 -215 5906 5736 202 279 0 0 chrX 12145819 12145862 -150454068 - L2 LINE L2 -19 3253 3211 272 284 42 32 chrX 12145881 12145976 -150453954 - MIR SINE MIR -69 139 44 1364 155 0 9 chrX 12146226 12146439 -150453491 - L1MC1 LINE L1 0 6333 6123 570 68 27 0 chrX 12146439 12146512 -150453418 + Alu SINE Alu 222 296 -16 2018 136 3 0 chrX 12146704 12146990 -150452940 - AluSx SINE Alu -25 287 1 2472 70 0 7 chrX 12148305 12148604 -150451326 + AluSp SINE Alu 1 297 -16 186 167 0 0 chrX 12148858 12148894 -150451036 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 774 209 124 0 chrX 12149082 12149259 -150450671 + MER3 DNA MER1_type 2 200 -9 2323 97 0 0 chrX 12149352 12149650 -150450280 + AluSx SINE Alu 1 298 -14 2322 71 3 14 chrX 12149698 12149993 -150449937 + AluSc SINE Alu 1 292 -17 1728 188 58 54 chrX 12150410 12150858 -150449072 - LTR7 LTR ERV1 0 450 1 1698 182 30 62 chrX 12150951 12151364 -150448566 + L1M4 LINE L1 4775 5175 -971 2045 123 7 7 chrX 12151364 12151665 -150448265 - AluSx SINE Alu -11 301 1 1698 182 30 62 chrX 12151665 12151690 -150448240 + L1M4 LINE L1 5175 5199 -947 618 124 261 33 chrX 12151697 12151850 -150448080 + L1MC3 LINE L1 6093 6280 -1505 486 247 156 53 chrX 12152194 12152644 -150447286 - L1ME LINE L1 -342 5779 5272 1909 139 10 27 chrX 12152848 12153149 -150446781 + AluJo SINE Alu 1 296 -16 288 310 133 0 chrX 12153736 12153849 -150446081 - MIR SINE MIR -58 150 23 345 291 109 27 chrX 12154046 12154088 -150445842 - L1ME4a LINE L1 0 6121 6084 1585 158 77 0 chrX 12154088 12154385 -150445545 - MER33 DNA MER1_type 0 324 5 345 291 109 27 chrX 12154385 12154562 -150445368 - L1ME4a LINE L1 -37 6084 5884 387 239 58 53 chrX 12154885 12155073 -150444857 - L1MC4 LINE L1 -12 8030 7842 436 311 86 66 chrX 12157160 12157462 -150442468 + L2 LINE L2 2946 3253 -19 1905 145 3 13 chrX 12157679 12157982 -150441948 + AluJb SINE Alu 2 301 -11 359 323 150 0 chrX 12158756 12158923 -150441007 - L3 LINE CR1 -1195 382 191 808 197 0 0 chrX 12159485 12159617 -150440313 - FLAM_A SINE Alu -1 132 1 2065 124 10 16 chrX 12160393 12160699 -150439231 + AluSq SINE Alu 1 304 -9 254 286 32 0 chrX 12161136 12161199 -150438731 + L2 LINE L2 3205 3269 -3 27 29 0 0 chrX 12162409 12162443 -150437487 + AT_rich Low_complexity Low_complexity 1 34 0 2493 64 0 0 chrX 12162826 12163122 -150436808 - AluY SINE Alu -15 296 1 2206 95 31 7 chrX 12163255 12163549 -150436381 - AluSx SINE Alu -11 301 1 317 285 171 13 chrX 12164272 12164430 -150435500 + MIR SINE MIR 21 203 -59 2125 121 3 13 chrX 12164788 12165095 -150434835 - AluSx SINE Alu -8 304 1 315 213 27 27 chrX 12165756 12165831 -150434099 + LTR33 LTR ERVL 79 153 -368 537 230 173 58 chrX 12167659 12167885 -150432045 + MIR SINE MIR 8 259 -3 283 301 158 0 chrX 12168312 12168445 -150431485 + MIR SINE MIR 26 180 -61 883 226 23 81 chrX 12168480 12168741 -150431189 - MER46C DNA MER2_type -88 250 5 183 255 43 0 chrX 12168767 12168814 -150431116 + MIR SINE MIR 213 261 -1 207 0 0 0 chrX 12170746 12170769 -150429161 + (T)n Simple_repeat Simple_repeat 1 23 0 230 203 25 89 chrX 12170959 12171038 -150428892 + MIR SINE MIR 153 226 -36 2073 113 0 32 chrX 12171602 12171911 -150428019 - AluSx SINE Alu -13 299 1 198 188 42 21 chrX 12172076 12172124 -150427806 + MIR3 SINE MIR 135 183 -25 21 0 0 0 chrX 12173122 12173143 -150426787 + AT_rich Low_complexity Low_complexity 1 21 0 1486 169 63 106 chrX 12178434 12178813 -150421117 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chrX 12180222 12180245 -150419685 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chrX 12182795 12182821 -150417109 + (T)n Simple_repeat Simple_repeat 1 26 0 3436 188 27 8 chrX 12184047 12184675 -150415255 - MER82 DNA MER2_type 0 653 14 567 283 12 18 chrX 12185282 12185448 -150414482 + MER5B DNA MER1_type 14 178 0 377 230 0 0 chrX 12185991 12186065 -150413865 - MER116 DNA Mariner -4 76 3 642 188 146 83 chrX 12186664 12186892 -150413038 + MER5C DNA MER1_type 16 267 -57 2140 108 7 3 chrX 12186892 12187189 -150412741 - AluSg1 SINE Alu -11 298 1 642 188 146 83 chrX 12187189 12187248 -150412682 + MER5C DNA MER1_type 267 321 -3 269 236 0 0 chrX 12189101 12189156 -150410774 - MIR SINE MIR -86 122 68 3783 108 28 51 chrX 12190145 12190756 -150409174 + MER4A LTR ERV1 4 600 0 948 93 0 14 chrX 12191489 12191629 -150408301 + AluSg/x SINE Alu 175 312 0 444 213 0 0 chrX 12191629 12191704 -150408226 - MER58 DNA MER1_type -140 75 1 188 336 69 69 chrX 12191707 12191823 -150408107 + L2 LINE L2 3151 3266 -6 380 317 54 7 chrX 12192605 12192772 -150407158 - MIR SINE MIR -62 146 15 711 174 81 12 chrX 12192988 12193149 -150406781 - MER5B DNA MER1_type -5 173 2 1996 116 0 43 chrX 12194126 12194429 -150405501 - AluSx SINE Alu -22 290 1 189 293 28 57 chrX 12194802 12194908 -150405022 - MIR SINE MIR -96 166 64 252 0 0 0 chrX 12195883 12195911 -150404019 + (A)n Simple_repeat Simple_repeat 1 28 0 1645 89 0 5 chrX 12196197 12196411 -150403519 + AluY SINE Alu 82 294 -17 1031 144 44 0 chrX 12196782 12196963 -150402967 - MER3 DNA MER1_type 0 209 21 292 300 20 20 chrX 12198233 12198333 -150401597 - L2 LINE L2 -466 2848 2749 2557 62 0 0 chrX 12198335 12198644 -150401286 + AluY SINE Alu 1 309 -2 1777 151 3 31 chrX 12198679 12198995 -150400935 - AluJo SINE Alu 0 308 1 474 236 164 36 chrX 12199190 12199355 -150400575 + MER5A DNA MER1_type 3 188 -1 1410 149 5 5 chrX 12200047 12200268 -150399662 - AluSg/x SINE Alu -7 303 83 201 74 0 0 chrX 12200718 12200745 -150399185 + (CA)n Simple_repeat Simple_repeat 1 27 0 1204 199 9 0 chrX 12200986 12201202 -150398728 + MER20 DNA MER1_type 2 219 0 1250 137 13 44 chrX 12201235 12201438 -150398492 + MER20 DNA MER1_type 1 198 -21 3681 108 35 52 chrX 12201438 12201461 -150398469 + MER4B LTR ERV1 1 23 -587 2398 87 0 0 chrX 12201461 12201760 -150398170 + AluSc SINE Alu 1 299 -10 3681 108 35 52 chrX 12201760 12202356 -150397574 + MER4B LTR ERV1 23 610 0 1250 137 13 44 chrX 12202356 12202378 -150397552 + MER20 DNA MER1_type 198 219 0 680 204 0 77 chrX 12202494 12202675 -150397255 + MER5B DNA MER1_type 1 167 -11 1217 183 131 51 chrX 12202685 12202997 -150396933 + MER58B DNA MER1_type 5 341 0 817 197 0 0 chrX 12203028 12203170 -150396760 - AluSg/x SINE Alu -14 298 157 5424 202 74 34 chrX 12203307 12204575 -150395355 + Charlie1a DNA MER1_type 5 1335 -1426 2081 118 3 64 chrX 12204575 12204760 -150395170 - AluSx SINE Alu -2 310 152 2386 85 7 0 chrX 12204760 12205066 -150394864 - AluSp SINE Alu -5 308 1 2081 118 3 64 chrX 12205066 12205210 -150394720 - AluSx SINE Alu -160 152 1 5424 202 74 34 chrX 12205210 12205335 -150394595 + Charlie1a DNA MER1_type 1335 1454 -1 350 304 122 23 chrX 12206763 12206977 -150392953 + L1ME1 LINE L1 5927 6161 -5 697 101 62 39 chrX 12207603 12207732 -150392198 - MER20 DNA MER1_type 0 219 88 678 114 69 80 chrX 12207776 12207951 -150391979 - MER5B DNA MER1_type 0 178 6 1709 95 0 76 chrX 12208042 12208305 -150391625 - AluSg/x SINE Alu 0 312 70 1446 238 111 65 chrX 12208734 12209301 -150390629 + MLT1E LTR MaLR 1 593 0 335 224 70 90 chrX 12209576 12209687 -150390243 - MER5A DNA MER1_type 0 189 80 851 152 0 0 chrX 12209687 12209812 -150390118 - FLAM_A SINE Alu -5 128 4 335 224 70 90 chrX 12209812 12209856 -150390074 - MER5A DNA MER1_type -109 80 37 829 205 82 0 chrX 12210319 12210490 -150389440 - MER58A DNA MER1_type 0 224 40 34 0 0 0 chrX 12211378 12211412 -150388518 + AT_rich Low_complexity Low_complexity 1 34 0 559 224 164 0 chrX 12212907 12213059 -150386871 - MER5A DNA MER1_type -3 186 10 25 0 0 0 chrX 12213255 12213280 -150386650 + GC_rich Low_complexity Low_complexity 1 25 0 186 118 0 0 chrX 12213631 12213665 -150386265 + (A)n Simple_repeat Simple_repeat 1 34 0 398 241 124 71 chrX 12214095 12214377 -150385553 + MER46C DNA MER2_type 5 301 -37 2046 192 27 2 chrX 12214838 12215239 -150384691 - L1MB7 LINE L1 0 6184 5774 252 198 30 59 chrX 12216228 12216329 -150383601 + GA-rich Low_complexity Low_complexity 2 99 0 182 219 0 0 chrX 12217357 12217398 -150382532 + L2 LINE L2 3265 3305 -8 662 307 28 20 chrX 12217874 12218125 -150381805 - MIR SINE MIR -1 261 9 2191 94 0 88 chrX 12218335 12218496 -150381434 + AluSx SINE Alu 1 120 -192 2158 121 0 38 chrX 12218496 12218810 -150381120 + AluSq SINE Alu 1 302 -11 2191 94 0 88 chrX 12218810 12218979 -150380951 + AluSx SINE Alu 120 302 -10 195 42 0 0 chrX 12219586 12219610 -150380320 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chrX 12219776 12219804 -150380126 + AT_rich Low_complexity Low_complexity 1 28 0 1007 220 6 0 chrX 12220380 12220562 -150379368 + MER58A DNA MER1_type 42 224 0 2505 67 0 13 chrX 12220881 12221193 -150378737 - AluY SINE Alu -2 309 2 24 96 0 0 chrX 12222109 12222182 -150377748 + AT_rich Low_complexity Low_complexity 1 73 0 397 145 120 8 chrX 12224408 12224497 -150375433 + L1MB3 LINE L1 6096 6183 0 446 171 0 0 chrX 12224585 12224661 -150375269 - MER116 DNA Mariner -2 78 3 22 0 0 0 chrX 12225385 12225407 -150374523 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chrX 12226143 12226167 -150373763 + (TC)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chrX 12226511 12226532 -150373398 + AT_rich Low_complexity Low_complexity 1 21 0 231 209 179 0 chrX 12228378 12228445 -150371485 + MER116 DNA Mariner 1 79 -1 560 304 79 25 chrX 12229418 12229698 -150370232 + L2 LINE L2 3016 3310 -3 587 297 74 19 chrX 12230078 12230334 -150369596 - L3 LINE CR1 -720 857 588 204 182 0 0 chrX 12230348 12230392 -150369538 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2412 86 7 0 chrX 12230433 12230736 -150369194 - AluSp SINE Alu -8 305 1 204 390 38 0 chrX 12230759 12230864 -150369066 - L3 LINE CR1 -1024 553 445 2165 106 3 35 chrX 12231205 12231517 -150368413 - AluSx SINE Alu -10 302 1 2166 114 14 0 chrX 12232362 12232659 -150367271 - AluSx SINE Alu -11 301 1 1068 178 58 5 chrX 12232901 12233109 -150366821 - MER20 DNA MER1_type 0 219 1 650 214 38 19 chrX 12233168 12233327 -150366603 - MER5B DNA MER1_type -1 177 16 2020 160 89 49 chrX 12233625 12234074 -150365856 - MLT1C LTR MaLR 0 467 1 1694 164 29 7 chrX 12235263 12235387 -150364543 + AluJo SINE Alu 1 121 -191 348 24 0 0 chrX 12235387 12235428 -150364502 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1694 164 29 7 chrX 12235428 12235578 -150364352 + AluJo SINE Alu 121 281 -31 1101 153 23 0 chrX 12236113 12236290 -150363640 - FRAM SINE Alu -1 175 1 2366 122 72 12 chrX 12236998 12237401 -150362529 + MSTC LTR MaLR 1 427 -1 189 276 16 57 chrX 12237694 12237817 -150362113 - MIR SINE MIR -115 147 30 224 333 13 0 chrX 12238131 12238209 -150361721 + MIR SINE MIR 105 183 -79 198 0 0 0 chrX 12238701 12238723 -150361207 + (T)n Simple_repeat Simple_repeat 1 22 0 4796 195 71 2 chrX 12238768 12239739 -150360191 + MER45B DNA AcHobo 1 1038 -2 441 0 0 0 chrX 12240019 12240068 -150359862 + (CA)n Simple_repeat Simple_repeat 2 50 0 230 297 0 31 chrX 12240175 12240257 -150359673 + MIR SINE MIR 34 106 -102 22 80 0 0 chrX 12240885 12240935 -150358995 + AT_rich Low_complexity Low_complexity 1 50 0 185 256 0 0 chrX 12241115 12241154 -150358776 + MER5A DNA MER1_type 150 188 -1 607 178 10 0 chrX 12241826 12241927 -150358003 + FRAM SINE Alu 1 101 -75 303 296 112 26 chrX 12242109 12242261 -150357669 + L3 LINE CR1 354 518 -1059 1756 139 19 52 chrX 12242274 12242583 -150357347 + AluJo SINE Alu 1 299 -13 199 320 0 26 chrX 12242673 12242751 -150357179 + L3 LINE CR1 556 631 -946 258 361 0 0 chrX 12243726 12243798 -150356132 - L2 LINE L2 0 3272 3201 306 293 54 7 chrX 12244366 12244513 -150355417 + MIR SINE MIR 93 246 -16 22 35 0 0 chrX 12245398 12245427 -150354503 + AT_rich Low_complexity Low_complexity 1 29 0 198 103 0 0 chrX 12246959 12246988 -150352942 + (A)n Simple_repeat Simple_repeat 1 29 0 2674 126 31 62 chrX 12247703 12248349 -150351581 + MER4D LTR ERV1 1 896 -7 1153 235 76 9 chrX 12248604 12248945 -150350985 + L1M4 LINE L1 4566 4929 -1217 180 306 46 37 chrX 12249239 12249347 -150350583 + L2 LINE L2 3155 3263 -9 227 333 0 0 chrX 12249655 12249718 -150350212 + (TATG)n Simple_repeat Simple_repeat 1 63 0 266 292 42 17 chrX 12249823 12249943 -150349987 + (CATG)n Simple_repeat Simple_repeat 4 126 0 231 153 69 0 chrX 12249947 12250019 -150349911 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 212 291 18 0 chrX 12250173 12250228 -150349702 + MIR SINE MIR 56 111 -151 748 184 8 8 chrX 12251440 12251565 -150348365 + FLAM_C SINE Alu 2 126 -17 21 36 0 0 chrX 12251565 12251593 -150348337 + AT_rich Low_complexity Low_complexity 1 28 0 3747 159 90 44 chrX 12251749 12253137 -150346793 - L1MB8 LINE L1 0 6178 4742 2373 107 0 0 chrX 12253821 12254131 -150345799 - AluSx SINE Alu -2 310 1 211 255 0 0 chrX 12255040 12255091 -150344839 + (CCCA)n Simple_repeat Simple_repeat 1 51 0 2391 81 0 10 chrX 12255321 12255629 -150344301 - AluY SINE Alu -1 310 6 180 0 0 0 chrX 12255632 12255652 -150344278 + (T)n Simple_repeat Simple_repeat 1 20 0 265 311 59 8 chrX 12256668 12256787 -150343143 - L2 LINE L2 -321 2951 2827 1272 285 56 17 chrX 12256839 12257249 -150342681 + LTR16A LTR ERVL 25 450 0 1659 221 137 6 chrX 12257394 12257965 -150341965 + L1ME2 LINE L1 5436 5944 -220 238 307 39 71 chrX 12258023 12258150 -150341780 - L2 LINE L2 -684 2630 2508 2086 129 3 0 chrX 12258619 12258914 -150341016 + AluSx SINE Alu 1 296 -16 2754 116 47 24 chrX 12258925 12259347 -150340583 + MSTB1 LTR MaLR 1 432 0 243 342 153 5 chrX 12259418 12259608 -150340322 + MIR SINE MIR 5 222 -40 2355 102 3 0 chrX 12259723 12260026 -150339904 + AluSx SINE Alu 1 304 -8 705 307 48 4 chrX 12260093 12260324 -150339606 + MIR SINE MIR 21 261 -1 988 199 56 5 chrX 12260923 12261119 -150338811 - MER58A DNA MER1_type -3 221 16 339 202 128 64 chrX 12261385 12261588 -150338342 - L1MC4a LINE L1 -1885 5923 5708 1153 126 0 40 chrX 12261615 12261789 -150338141 - FRAM SINE Alu -12 164 1 611 265 29 19 chrX 12261790 12261986 -150337944 - L1MC4a LINE L1 -469 5652 5497 1597 219 87 61 chrX 12262031 12262163 -150337767 - MER68 LTR ERV1 -10 552 425 2122 120 43 0 chrX 12262163 12262462 -150337468 + AluSx SINE Alu 1 312 0 1597 219 87 61 chrX 12262462 12262867 -150337063 - MER68 LTR ERV1 -137 425 1 1528 124 58 0 chrX 12263401 12263643 -150336287 + L1MA5A LINE L1 6038 6293 -4 1111 238 63 17 chrX 12263725 12263868 -150336062 - L1ME3A LINE L1 -1 6169 6034 2274 106 0 0 chrX 12263868 12264160 -150335770 - AluSx SINE Alu -20 292 1 1111 238 63 17 chrX 12264160 12264420 -150335510 - L1ME3A LINE L1 -136 6034 5709 485 217 29 86 chrX 12264454 12264629 -150335301 - L1ME3 LINE L1 -2 6162 5998 374 236 149 7 chrX 12264702 12264839 -150335091 + MIR3 SINE MIR 38 194 -14 424 316 96 43 chrX 12264881 12265090 -150334840 - L3b LINE CR1 -244 1339 1120 459 261 163 7 chrX 12265204 12265357 -150334573 + MER5A DNA MER1_type 10 186 -3 2808 166 21 48 chrX 12265393 12265534 -150334396 - MLT1D LTR MaLR -2 503 360 1518 130 9 0 chrX 12265534 12265757 -150334173 - AluJo SINE Alu -3 309 85 2808 166 21 48 chrX 12265757 12266132 -150333798 - MLT1D LTR MaLR -145 360 1 192 337 48 12 chrX 12266334 12266417 -150333513 - MIR3 SINE MIR -3 205 120 322 281 172 8 chrX 12266583 12266711 -150333219 - L2 LINE L2 -1 3312 3164 468 272 40 50 chrX 12267178 12267380 -150332550 + MER63A DNA MER1_type 1 200 -10 2004 215 50 21 chrX 12267917 12268436 -150331494 - L1ME1 LINE L1 -1 6165 5628 306 258 218 0 chrX 12268458 12268582 -150331348 - MIR SINE MIR -70 192 42 * 321 247 157 0 chrX 12268576 12268665 -150331265 + MIR SINE MIR 159 261 -1 2734 77 14 3 chrX 12269479 12269831 -150330099 - L1PB1 LINE L1 -1 6150 5795 742 193 12 6 chrX 12269844 12270015 -150329915 + (CATA)n Simple_repeat Simple_repeat 1 172 0 2246 97 13 0 chrX 12270017 12270326 -150329604 - L1PB1 LINE L1 -360 5791 5479 235 85 43 0 chrX 12271019 12271066 -150328864 + (CAA)n Simple_repeat Simple_repeat 1 49 0 1856 153 13 33 chrX 12271531 12271838 -150328092 - AluJb SINE Alu -11 301 1 2082 123 54 0 chrX 12273654 12273971 -150325959 - MER44D DNA MER2_type -5 604 1 213 324 14 0 chrX 12274094 12274165 -150325765 + MIR SINE MIR 119 190 -72 1216 175 30 105 chrX 12274291 12274623 -150325307 + AluJb SINE Alu 1 307 -5 2846 131 32 53 chrX 12274670 12274923 -150325007 + L1MA6 LINE L1 5779 6036 -264 2502 49 3 0 chrX 12274923 12275211 -150324719 + AluSp SINE Alu 1 289 -24 2846 131 32 53 chrX 12275211 12275483 -150324447 + L1MA6 LINE L1 6036 6293 -7 32 26 0 0 chrX 12275483 12275522 -150324408 + AT_rich Low_complexity Low_complexity 1 39 0 496 322 131 69 chrX 12275709 12275955 -150323975 + L3 LINE CR1 174 403 -1174 2049 142 0 0 chrX 12275955 12276250 -150323680 - AluJo SINE Alu -16 296 2 496 322 131 69 chrX 12276250 12276760 -150323170 + L3 LINE CR1 403 977 -600 228 67 0 0 chrX 12277031 12277061 -150322869 + (TG)n Simple_repeat Simple_repeat 1 30 0 2081 178 40 33 chrX 12277895 12278350 -150321580 + L1MB7 LINE L1 5716 6173 -11 2847 193 11 18 chrX 12278512 12279072 -150320858 - L1MD3 LINE L1 0 7995 7440 236 333 0 0 chrX 12279105 12279171 -150320759 - L2 LINE L2 -1 3312 3247 267 318 18 18 chrX 12279171 12279281 -150320649 - MER5B DNA MER1_type 0 178 69 215 270 22 79 chrX 12279202 12279291 -150320639 + MER5A DNA MER1_type 43 126 -63 * 1234 166 29 5 chrX 12279703 12279965 -150319965 + AluJo SINE Alu 73 339 0 618 224 29 53 chrX 12280160 12280330 -150319600 - MER5B DNA MER1_type -8 170 5 457 280 172 6 chrX 12280350 12280507 -150319423 + MER5A DNA MER1_type 7 189 0 697 200 8 0 chrX 12280559 12280689 -150319241 - MER3 DNA MER1_type -78 131 1 2131 124 10 3 chrX 12281005 12281311 -150318619 - AluJb SINE Alu -4 308 1 523 189 11 0 chrX 12281318 12281413 -150318517 + MER94 DNA DNA 36 131 -3 343 263 0 0 chrX 12281728 12281808 -150318122 - MER96 DNA MER1_type? -94 81 2 615 326 30 21 chrX 12282166 12282287 -150317643 + MIR SINE MIR 21 139 -123 813 167 35 0 chrX 12282287 12282431 -150317499 + L1MB5 LINE L1 6025 6173 -1 615 326 30 21 chrX 12282431 12282545 -150317385 + MIR SINE MIR 139 258 -4 292 266 0 51 chrX 12283158 12283237 -150316693 - L2 LINE L2 -8 3264 3190 2120 123 0 38 chrX 12283262 12283578 -150316352 + AluSx SINE Alu 6 309 -3 224 265 133 5 chrX 12283587 12283701 -150316229 + MIR SINE MIR 20 192 -70 3506 155 24 16 chrX 12284304 12284884 -150315046 + L1MB5 LINE L1 5582 6166 -8 1851 159 10 16 chrX 12286384 12286693 -150313237 + AluJb SINE Alu 3 309 -3 435 246 40 23 chrX 12286754 12286929 -150313001 - L1MC5 LINE L1 -224 7737 7560 260 333 125 7 chrX 12287309 12287453 -150312477 - MIR SINE MIR -7 255 95 2198 175 67 48 chrX 12287453 12287949 -150311981 + MLT1D LTR MaLR 1 505 0 990 114 103 29 chrX 12288595 12288770 -150311160 - MER5A DNA MER1_type 0 189 2 535 291 115 63 chrX 12289179 12289235 -150310695 + L2 LINE L2 2650 2702 -570 2504 57 0 3 chrX 12289235 12289533 -150310397 + AluY SINE Alu 1 297 -14 535 291 115 63 chrX 12289533 12290021 -150309909 + L2 LINE L2 2702 3223 -49 1887 149 3 7 chrX 12290072 12290368 -150309562 + AluJo SINE Alu 3 297 -15 632 282 64 20 chrX 12290441 12290586 -150309344 - MIR SINE MIR -34 228 70 558 125 0 0 chrX 12290586 12290666 -150309264 - MADE1 DNA Mariner 0 80 1 632 282 64 20 chrX 12290666 12290722 -150309208 - MIR SINE MIR -192 70 18 909 189 109 0 chrX 12291044 12291245 -150308685 + MER33 DNA MER1_type 1 223 -101 1648 159 45 21 chrX 12291246 12291536 -150308394 + AluJo SINE Alu 1 297 -15 632 282 64 20 chrX 12291609 12291754 -150308176 - MIR SINE MIR -34 228 70 558 125 0 0 chrX 12291754 12291834 -150308096 - MADE1 DNA Mariner 0 80 1 632 282 64 20 chrX 12291834 12291890 -150308040 - MIR SINE MIR -192 70 18 995 147 91 141 chrX 12292212 12292414 -150307516 + MER33 DNA MER1_type 1 212 -2373 1780 143 44 20 chrX 12292414 12292708 -150307222 + AluJo SINE Alu 1 301 -11 995 147 91 141 chrX 12292708 12292737 -150307193 + MER33 DNA MER1_type 212 241 -2344 2234 98 0 7 chrX 12292737 12293033 -150306897 + AluSg SINE Alu 1 294 -16 995 147 91 141 chrX 12293033 12293141 -150306789 + MER33 DNA MER1_type 241 324 0 207 0 0 0 chrX 12295561 12295584 -150304346 + (A)n Simple_repeat Simple_repeat 1 23 0 2073 136 0 7 chrX 12295665 12295960 -150303970 - AluSx SINE Alu -19 293 1 751 244 20 5 chrX 12296539 12296727 -150303203 + MER5B DNA MER1_type 3 178 0 445 245 55 55 chrX 12297866 12298029 -150301901 + MER5B DNA MER1_type 1 163 -15 558 317 11 16 chrX 12298201 12298387 -150301543 - L2 LINE L2 -11 3302 3118 627 153 153 68 chrX 12298486 12298663 -150301267 - L1MB3 LINE L1 0 6183 5992 206 254 16 16 chrX 12298683 12298746 -150301184 - MIR3 SINE MIR -25 183 121 4423 61 53 0 chrX 12298829 12299355 -150300575 + MER41A LTR ERV1 1 554 0 828 175 94 0 chrX 12299442 12299613 -150300317 - MER20 DNA MER1_type 0 219 33 954 180 6 0 chrX 12299761 12299922 -150300008 + MER5B DNA MER1_type 17 178 0 561 93 0 70 chrX 12299931 12300017 -150299913 + MADE1 DNA Mariner 1 80 0 508 193 187 21 chrX 12300021 12300177 -150299753 + MER5A DNA MER1_type 4 189 0 207 0 0 0 chrX 12300271 12300294 -150299636 + (CAA)n Simple_repeat Simple_repeat 2 24 0 483 92 0 0 chrX 12301223 12301288 -150298642 + MADE1 DNA Mariner 16 80 0 762 189 15 8 chrX 12301404 12301536 -150298394 - FLAM_A SINE Alu 0 133 1 1194 155 122 20 chrX 12301635 12301880 -150298050 + AluJo SINE Alu 22 291 -21 463 216 45 0 chrX 12301887 12301975 -150297955 - MER58 DNA MER1_type -249 92 1 1546 146 18 58 chrX 12304703 12304977 -150294953 + AluJo SINE Alu 1 263 -49 234 152 0 0 chrX 12304977 12305010 -150294920 - Alu SINE Alu -53 113 81 268 233 0 0 chrX 12305343 12305403 -150294527 - MER116 DNA Mariner 0 80 21 2307 92 0 20 chrX 12305403 12305709 -150294221 - AluSx SINE Alu -12 300 1 1352 138 43 5 chrX 12306984 12307194 -150292736 - MER20 DNA MER1_type -1 218 1 476 218 238 14 chrX 12307271 12307418 -150292512 + MER5A DNA MER1_type 9 188 -1 592 236 25 70 chrX 12307814 12307970 -150291960 + MER106A DNA MER1_type 1 144 -92 2362 96 16 0 chrX 12307970 12308273 -150291657 + AluSx SINE Alu 1 308 -4 592 236 25 70 chrX 12308273 12308358 -150291572 + MER106A DNA MER1_type 144 231 -5 248 318 191 12 chrX 12308557 12308730 -150291200 + MIR SINE MIR 56 259 -3 183 163 70 23 chrX 12309831 12309874 -150290056 + MIR SINE MIR 82 126 -82 540 259 42 48 chrX 12312151 12312340 -150287590 - MIR SINE MIR 0 262 75 1482 175 71 62 chrX 12312852 12313304 -150286626 - Charlie4a DNA MER1_type -27 481 26 318 270 30 20 chrX 12313381 12313481 -150286449 + MER58 DNA MER1_type 171 271 -2149 286 152 0 0 chrX 12313478 12313524 -150286406 + MER58 DNA MER1_type 2374 2419 -1 * 2091 150 13 0 chrX 12313795 12314102 -150285828 + AluJo SINE Alu 2 312 0 286 304 161 18 chrX 12316112 12316224 -150283706 - MIR SINE MIR -122 140 13 2228 84 49 0 chrX 12316243 12316530 -150283400 + AluSq SINE Alu 1 301 -12 661 147 0 0 chrX 12316957 12317052 -150282878 + L1MC1 LINE L1 6221 6315 -18 2542 198 45 11 chrX 12317076 12317611 -150282319 + L1MD3 LINE L1 7434 7986 -9 563 151 0 59 chrX 12317818 12317937 -150281993 - L1MC3 LINE L1 -8 7777 7666 2178 121 7 13 chrX 12317962 12318269 -150281661 - AluSx SINE Alu -7 305 1 243 114 23 0 chrX 12318270 12318314 -150281616 - L1MC3 LINE L1 -101 7684 7640 639 318 27 5 chrX 12318442 12318665 -150281265 - MIR SINE MIR -22 240 13 281 331 167 33 chrX 12318650 12318949 -150280981 - L3 LINE CR1 -624 953 615 * 937 167 24 0 chrX 12319061 12319229 -150280701 + MER5B DNA MER1_type 7 178 0 483 283 182 0 chrX 12319820 12320018 -150279912 - MIR SINE MIR -26 236 3 670 245 101 11 chrX 12320235 12320423 -150279507 + MER3 DNA MER1_type 5 209 0 185 229 0 86 chrX 12320922 12320992 -150278938 - MIR3 SINE MIR -53 155 92 216 97 0 0 chrX 12321979 12322010 -150277920 + (TCTG)n Simple_repeat Simple_repeat 1 31 0 1765 155 7 18 chrX 12322010 12322294 -150277636 - AluJb SINE Alu -31 281 1 1990 149 0 0 chrX 12322605 12322893 -150277037 - AluJb SINE Alu -24 288 1 1241 261 118 8 chrX 12323096 12323494 -150276436 + MLT1J LTR MaLR 1 442 -69 2034 140 3 16 chrX 12323827 12324142 -150275788 + AluJo SINE Alu 1 311 -1 337 239 90 4 chrX 12324359 12324520 -150275410 + MIR SINE MIR 16 252 -10 217 188 21 21 chrX 12324528 12324576 -150275354 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 202 122 20 41 chrX 12324645 12324694 -150275236 + (TATG)n Simple_repeat Simple_repeat 2 49 0 369 0 0 0 chrX 12325505 12325546 -150274384 + (TG)n Simple_repeat Simple_repeat 2 42 0 1961 162 0 3 chrX 12325771 12326068 -150273862 + AluJb SINE Alu 1 296 -16 295 182 91 52 chrX 12326997 12327074 -150272856 + L2 LINE L2 3141 3220 -52 2622 137 49 5 chrX 12327406 12327814 -150272116 - MSTA LTR MaLR 0 428 3 2278 102 3 13 chrX 12328823 12329138 -150270792 + AluSx SINE Alu 1 312 0 252 250 14 0 chrX 12329255 12329327 -150270603 - MER116 DNA Mariner -7 73 1 2503 67 0 0 chrX 12329451 12329750 -150270180 + AluY SINE Alu 1 299 -12 2046 193 37 43 chrX 12330229 12330423 -150269507 - MER66B LTR ERV1 -27 459 265 2292 88 0 10 chrX 12330423 12330718 -150269212 - AluSg SINE Alu -18 292 1 2046 193 37 43 chrX 12330718 12330985 -150268945 - MER66B LTR ERV1 -221 265 1 1316 132 0 32 chrX 12331009 12331228 -150268702 - MER20 DNA MER1_type -4 215 4 2235 110 3 3 chrX 12331735 12332034 -150267896 + AluSq SINE Alu 1 299 -14 1835 155 10 13 chrX 12333133 12333442 -150266488 - AluJo SINE Alu -4 308 1 1428 169 71 4 chrX 12334179 12334434 -150265496 - AluJo SINE Alu -16 296 25 820 294 53 61 chrX 12334525 12334614 -150265316 + L1ME3A LINE L1 4487 4575 -1571 2425 65 0 3 chrX 12334614 12334908 -150265022 + AluY SINE Alu 1 293 -18 820 294 53 61 chrX 12334908 12334996 -150264934 + L1ME3A LINE L1 4575 4662 -1484 2200 53 0 25 chrX 12334996 12335279 -150264651 + AluY SINE Alu 34 309 -2 820 294 53 61 chrX 12335279 12335930 -150264000 + L1ME3A LINE L1 4662 5309 -837 580 234 59 36 chrX 12335941 12336163 -150263767 + L1ME3A LINE L1 5353 5579 -663 904 220 140 11 chrX 12336926 12337190 -150262740 + L1ME3A LINE L1 5868 6165 -5 1041 161 31 36 chrX 12338486 12338678 -150261252 + MER20 DNA MER1_type 29 219 0 776 234 64 67 chrX 12339099 12339174 -150260756 + L1M4 LINE L1 3230 3304 -2842 2511 67 0 0 chrX 12339174 12339472 -150260458 + AluY SINE Alu 1 298 -13 776 234 64 67 chrX 12339472 12339738 -150260192 + L1M4 LINE L1 3304 3570 -2576 2064 131 10 3 chrX 12339743 12340041 -150259889 + AluSx SINE Alu 1 300 -12 2156 72 65 0 chrX 12340082 12340359 -150259571 + AluY SINE Alu 17 311 0 22 0 0 0 chrX 12340359 12340381 -150259549 + AT_rich Low_complexity Low_complexity 1 22 0 310 326 104 65 chrX 12340977 12341410 -150258520 + L2 LINE L2 2817 3266 -6 251 309 85 0 chrX 12341991 12342085 -150257845 - L2 LINE L2 -2 3311 3210 354 348 82 13 chrX 12343587 12343745 -150256185 - MIR3 SINE MIR -24 184 16 449 221 193 14 chrX 12343748 12343893 -150256037 + MER5A DNA MER1_type 18 188 -1 1620 161 9 59 chrX 12344058 12344382 -150255548 + AluJo SINE Alu 1 308 -4 1579 133 11 15 chrX 12344784 12345048 -150254882 + L1MB7 LINE L1 5902 6164 -20 370 267 186 74 chrX 12347207 12347762 -150252168 - L1M2 LINE L1 -5761 1088 472 689 151 178 7 chrX 12347972 12348124 -150251806 + MER5B DNA MER1_type 1 178 0 237 83 0 0 chrX 12349207 12349243 -150250687 + (T)n Simple_repeat Simple_repeat 1 36 0 1043 237 69 96 chrX 12349585 12349863 -150250067 + L1ME4a LINE L1 5528 5812 -309 1352 132 4 40 chrX 12349863 12350090 -150249840 + MER20 DNA MER1_type 1 219 0 1043 237 69 96 chrX 12350090 12350273 -150249657 + L1ME4a LINE L1 5812 5972 -149 1191 214 85 58 chrX 12350273 12350707 -150249223 + MLT1J1 LTR MaLR 1 446 0 1043 237 69 96 chrX 12350707 12350851 -150249079 + L1ME4a LINE L1 5972 6118 -3 1945 154 10 7 chrX 12350954 12351260 -150248670 + AluJb SINE Alu 1 307 -5 282 140 0 0 chrX 12351342 12351392 -150248538 - Alu SINE Alu -4 297 248 2158 118 0 7 chrX 12351344 12351640 -150248290 - AluSg SINE Alu -16 294 1 947 138 73 82 chrX 12351653 12351795 -150248135 - L1MA9 LINE L1 0 6312 6170 330 26 0 0 chrX 12351795 12351834 -150248096 + (TG)n Simple_repeat Simple_repeat 2 40 0 947 138 73 82 chrX 12351834 12351863 -150248067 - L1MA9 LINE L1 -142 6170 6142 1641 135 42 31 chrX 12351863 12352151 -150247779 + AluJb SINE Alu 1 291 -21 947 138 73 82 chrX 12352151 12352210 -150247720 - L1MA9 LINE L1 -170 6142 6083 2489 67 7 0 chrX 12352396 12352696 -150247234 - AluY SINE Alu -9 302 1 348 234 32 70 chrX 12352820 12352914 -150247016 + HAL1b LINE L1 760 847 -501 2059 166 14 8 chrX 12352914 12353281 -150246649 + L1MC1 LINE L1 5965 6333 0 348 234 32 70 chrX 12353281 12353344 -150246586 + HAL1b LINE L1 847 911 -437 302 287 0 0 chrX 12353385 12353472 -150246458 + HAL1 LINE L1 2249 2335 -172 1740 264 114 14 chrX 12353484 12354135 -150245795 - MER20B DNA MER1_type -5 778 63 397 210 45 70 chrX 12354180 12354337 -150245593 + HAL1 LINE L1 2339 2491 -16 7675 35 0 1 chrX 12354353 12355609 -150244321 + L1PA5 LINE L1 4903 6153 -1 346 233 12 0 chrX 12355680 12355766 -150244164 + MIR SINE MIR 127 213 -49 186 395 0 39 chrX 12356803 12356876 -150243054 - MIR3 SINE MIR -75 133 66 1700 157 0 58 chrX 12356876 12357189 -150242741 - AluJo SINE Alu -17 295 1 186 395 0 39 chrX 12357189 12357244 -150242686 - MIR3 SINE MIR -142 66 10 2389 84 3 3 chrX 12357983 12358282 -150241648 - AluY SINE Alu -12 299 1 345 290 157 0 chrX 12358304 12358521 -150241409 - L3 LINE CR1 -6 1571 1321 2135 138 0 0 chrX 12358584 12358881 -150241049 + AluSx SINE Alu 6 302 -10 3756 166 54 7 chrX 12359093 12359793 -150240137 - L1MB5 LINE L1 0 6174 5442 2574 49 0 16 chrX 12359806 12360114 -150239816 - AluY SINE Alu -8 303 1 245 311 180 5 chrX 12360174 12360380 -150239550 + L2 LINE L2 2836 3077 -195 190 259 19 0 chrX 12360564 12360618 -150239312 - L3 LINE CR1 -640 937 883 683 275 152 9 chrX 12360732 12361048 -150238882 + L2 LINE L2 1734 2094 -1220 371 235 118 29 chrX 12361070 12361206 -150238724 + L2 LINE L2 3166 3313 0 429 272 230 21 chrX 12361232 12361467 -150238463 - L3 LINE CR1 -825 752 469 280 248 28 0 chrX 12362236 12362315 -150237615 + MIR SINE MIR 75 154 -73 2280 104 0 0 chrX 12362325 12362622 -150237308 + AluSc SINE Alu 1 297 -12 1522 159 42 4 chrX 12362786 12363050 -150236880 - MLT1A1 LTR MaLR -89 276 3 254 209 90 0 chrX 12363219 12363286 -150236644 + MIR SINE MIR 113 185 -77 2309 119 3 0 chrX 12364531 12364834 -150235096 + AluSx SINE Alu 1 304 -8 190 268 79 55 chrX 12364864 12364991 -150234939 + MIR SINE MIR 51 180 -82 241 258 0 0 chrX 12365240 12365306 -150234624 + (TA)n Simple_repeat Simple_repeat 2 67 0 1094 181 47 0 chrX 12365369 12365601 -150234329 - L1P LINE L1 -2751 3395 3153 1046 88 117 12 chrX 12365601 12365771 -150234159 + L1PA15 LINE L1 5973 6161 -4 198 0 0 0 chrX 12366163 12366185 -150233745 + (T)n Simple_repeat Simple_repeat 1 22 0 2347 119 11 8 chrX 12366501 12366855 -150233075 + THE1A LTR MaLR 1 355 0 527 206 160 0 chrX 12367091 12367222 -150232708 + MER5A DNA MER1_type 26 177 -12 1939 197 85 17 chrX 12367239 12367712 -150232218 - MLT1D LTR MaLR 0 505 1 251 306 45 51 chrX 12367907 12368064 -150231866 - MIR SINE MIR -78 184 29 672 202 143 18 chrX 12368120 12368288 -150231642 - MER5A DNA MER1_type 0 189 1 590 217 70 0 chrX 12368367 12368510 -150231420 - MER5A DNA MER1_type -9 180 28 635 289 119 31 chrX 12368530 12368790 -150231140 - LTR16C LTR ERVL -208 283 1 323 202 307 26 chrX 12368879 12368993 -150230937 + MLT1E2 LTR MaLR 6 151 -503 1242 69 0 0 chrX 12369013 12369158 -150230772 + AluY SINE Alu 153 297 -14 2016 193 56 49 chrX 12369162 12369648 -150230282 + MLT1E2 LTR MaLR 138 626 0 1417 176 87 65 chrX 12369772 12369965 -150229965 + MLT1D LTR MaLR 1 188 -279 2003 135 24 3 chrX 12369965 12370262 -150229668 + AluSx SINE Alu 1 303 -9 180 0 0 0 chrX 12370262 12370282 -150229648 + (GA)n Simple_repeat Simple_repeat 2 21 0 1417 176 87 65 chrX 12370282 12370504 -150229426 + MLT1D LTR MaLR 187 467 0 364 200 242 0 chrX 12371036 12371156 -150228774 + MER5A DNA MER1_type 32 180 -9 1465 102 0 0 chrX 12371156 12371343 -150228587 + AluSg/x SINE Alu 104 290 -22 27 29 0 0 chrX 12371402 12371436 -150228494 + AT_rich Low_complexity Low_complexity 1 34 0 2067 128 0 3 chrX 12371436 12371726 -150228204 - AluJo SINE Alu -23 289 1 365 261 134 14 chrX 12372027 12372169 -150227761 - L1ME LINE L1 -342 5779 5621 4740 139 29 50 chrX 12372665 12373551 -150226379 - L1MB8 LINE L1 -52 6126 5259 210 118 0 0 chrX 12373589 12373623 -150226307 + (TG)n Simple_repeat Simple_repeat 1 34 0 203 267 0 0 chrX 12374786 12374846 -150225084 + T-rich Low_complexity Low_complexity 1 60 0 189 280 27 27 chrX 12374899 12374974 -150224956 - MIR3 SINE MIR -26 182 108 235 358 63 0 chrX 12375002 12375097 -150224833 - MIR SINE MIR -78 130 30 198 0 0 0 chrX 12375855 12375877 -150224053 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 201 245 0 0 chrX 12377137 12377186 -150222744 + GA-rich Low_complexity Low_complexity 2 50 0 539 212 121 42 chrX 12377282 12377447 -150222483 + MER5B DNA MER1_type 1 178 0 988 238 121 59 chrX 12379031 12379577 -150220353 + L1ME4a LINE L1 5539 6118 -3 2494 57 3 0 chrX 12379616 12379917 -150220013 - AluY SINE Alu -9 302 1 812 239 66 61 chrX 12380012 12380104 -150219826 + L2 LINE L2 2631 2721 -592 1991 148 0 10 chrX 12380104 12380415 -150219515 + AluJo SINE Alu 1 308 -4 812 239 66 61 chrX 12380415 12380785 -150219145 + L2 LINE L2 2721 3099 -214 7216 59 0 0 chrX 12380884 12382470 -150217460 - L1PA5 LINE L1 -6 6148 4561 741 266 104 37 chrX 12382969 12383323 -150216607 - L1MC4a LINE L1 -1802 6006 5629 692 255 235 9 chrX 12383475 12383984 -150215946 + L2 LINE L2 2708 3298 -15 2281 118 0 10 chrX 12384336 12384650 -150215280 + AluSx SINE Alu 1 311 -1 747 271 100 37 chrX 12384751 12385351 -150214579 + L1MC/D LINE L1 5125 5764 -765 * 20425 31 2 1 chrX 12385325 12387766 -150212164 + L1P LINE L1 1796 4238 -1908 329 200 0 64 chrX 12387759 12387781 -150212149 + L1ME LINE L1 5720 5742 -379 * 2080 157 0 0 chrX 12387781 12388087 -150211843 + AluSx SINE Alu 1 306 -6 329 200 0 64 chrX 12388087 12388174 -150211756 + L1ME LINE L1 5742 5822 -299 1124 71 5 27 chrX 12388377 12388561 -150211369 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1394 144 137 50 chrX 12388563 12388840 -150211090 - AluJb SINE Alu -11 301 1 2457 72 0 0 chrX 12389066 12389349 -150210581 + AluSq SINE Alu 2 287 -26 180 97 0 0 chrX 12389349 12389380 -150210550 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1281 239 39 82 chrX 12389578 12390092 -150209838 - MLT1J LTR MaLR -3 508 17 202 342 25 0 chrX 12390535 12390614 -150209316 + MIR SINE MIR 2 82 -180 825 178 2 5 chrX 12390614 12390767 -150209163 + MLT1E3 LTR MaLR 102 257 -397 5733 78 128 96 chrX 12390777 12392157 -150207773 + MER57B-int LTR ERV1 6012 7487 -50 2407 57 0 3 chrX 12392157 12392479 -150207451 + AluSg SINE Alu 1 321 0 5733 78 128 96 chrX 12392479 12392532 -150207398 + MER57B-int LTR ERV1 7487 7537 0 2203 121 10 0 chrX 12392532 12392839 -150207091 + MER57B LTR ERV1 1 310 -124 1761 216 12 3 chrX 12392874 12393202 -150206728 + MLT1E3 LTR MaLR 294 624 0 985 188 106 29 chrX 12393233 12393440 -150206490 + MER58A DNA MER1_type 2 224 0 1152 233 38 27 chrX 12393485 12393777 -150206153 - LTR16C LTR ERVL -16 475 181 1512 232 61 53 chrX 12395158 12395650 -150204280 - MLT1J LTR MaLR 0 511 16 317 268 321 5 chrX 12396723 12396932 -150202998 - MLT1L LTR MaLR -221 394 120 1735 159 0 47 chrX 12397942 12398243 -150201687 - AluJo SINE Alu -24 288 2 272 308 13 0 chrX 12398512 12398590 -150201340 + MER91A DNA MER1_type 105 183 -13 925 152 136 0 chrX 12398814 12398998 -150200932 + MER3 DNA MER1_type 1 209 0 284 152 0 0 chrX 12398998 12399044 -150200886 - MER3 DNA MER1_type -162 47 2 934 261 116 4 chrX 12399045 12399313 -150200617 - LTR16C LTR ERVL -14 477 180 276 177 0 32 chrX 12399559 12399580 -150200350 - L1MC4a LINE L1 -1896 5912 5892 1904 143 17 3 chrX 12399580 12399873 -150200057 - AluJb SINE Alu -15 297 1 276 177 0 32 chrX 12399873 12399913 -150200017 - L1MC4a LINE L1 -1916 5892 5853 261 307 48 5 chrX 12400275 12400403 -150199527 + MIR SINE MIR 36 165 -63 387 202 53 17 chrX 12400810 12400923 -150199007 - MLT1I LTR MaLR -25 421 264 265 248 24 72 chrX 12400989 12401114 -150198816 - HAL1 LINE L1 -13 2494 2376 198 312 195 37 chrX 12401114 12401326 -150198604 - L2 LINE L2 -170 3143 2898 549 255 155 0 chrX 12401326 12401487 -150198443 - MER5A DNA MER1_type 0 189 4 955 212 321 3 chrX 12401489 12401866 -150198064 - L2 LINE L2 -406 2908 2412 184 293 93 0 chrX 12401893 12401968 -150197962 + L2 LINE L2 2555 2636 -678 1387 173 113 46 chrX 12402283 12402566 -150197364 - AluJo SINE Alu 0 302 1 915 213 40 0 chrX 12402650 12402824 -150197106 + MER5A DNA MER1_type 3 183 -6 473 154 192 83 chrX 12402897 12403053 -150196877 - MER5B DNA MER1_type -1 177 5 181 264 150 29 chrX 12403064 12403204 -150196726 + L2 LINE L2 2878 3034 -238 1136 103 5 62 chrX 12403693 12403892 -150196038 - MLT2A2 LTR ERVL 0 453 293 408 224 174 50 chrX 12404047 12404248 -150195682 + MIR SINE MIR 3 228 -34 2522 171 66 2 chrX 12404297 12404753 -150195177 - MLT1D LTR MaLR -2 503 19 199 303 105 0 chrX 12404955 12405031 -150194899 + L3 LINE CR1 1196 1279 -298 937 150 87 2 chrX 12405158 12405451 -150194479 - THE1B LTR MaLR 0 364 1 1511 179 111 130 chrX 12405556 12405775 -150194155 + MLT1H LTR MaLR 1 223 -326 2327 92 0 16 chrX 12405775 12406081 -150193849 - AluSc SINE Alu -8 301 1 1511 179 111 130 chrX 12406081 12406421 -150193509 + MLT1H LTR MaLR 223 549 0 2318 94 0 13 chrX 12406454 12406762 -150193168 + AluSx SINE Alu 1 304 -8 1650 196 3 26 chrX 12406912 12407111 -150192819 - AluJb SINE Alu -7 305 114 2018 121 59 51 chrX 12407111 12407483 -150192447 + THE1C LTR MaLR 1 375 0 1650 196 3 26 chrX 12407483 12407595 -150192335 - AluJb SINE Alu -198 114 1 2775 178 72 55 chrX 12407924 12408113 -150191817 - L1MD3 LINE L1 0 7995 7811 2321 102 3 0 chrX 12408113 12408417 -150191513 - AluSq SINE Alu -8 305 1 2775 178 72 55 chrX 12408417 12408795 -150191135 - L1MD3 LINE L1 -184 7811 7441 273 227 18 0 chrX 12408795 12408861 -150191069 - MLT1F1 LTR MaLR -445 122 67 1783 159 21 3 chrX 12408869 12409152 -150190778 + AluJo SINE Alu 6 293 -19 2415 69 0 13 chrX 12409156 12409460 -150190470 + AluY SINE Alu 1 300 -11 2775 178 72 55 chrX 12409460 12409749 -150190181 - L1MD3 LINE L1 -562 7433 6851 284 270 112 20 chrX 12409771 12409923 -150190007 + L2 LINE L2 1851 2016 -1298 967 287 39 63 chrX 12409937 12410369 -150189561 - L1MC5 LINE L1 -50 7911 7470 2015 120 28 0 chrX 12410369 12410652 -150189278 - AluSc SINE Alu -18 291 1 967 287 39 63 chrX 12410652 12410682 -150189248 - L1MC5 LINE L1 -491 7470 7441 1893 88 71 14 chrX 12410682 12410965 -150188965 + AluSq SINE Alu 1 299 -14 967 287 39 63 chrX 12410965 12411117 -150188813 - L1MC5 LINE L1 -520 7441 7311 560 61 41 10 chrX 12411123 12411221 -150188709 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 2088 110 6 49 chrX 12411316 12411643 -150188287 - AluSq SINE Alu 0 313 1 366 324 114 9 chrX 12411646 12411856 -150188074 + L2 LINE L2 2238 2469 -845 410 278 68 30 chrX 12412131 12412264 -150187666 + MIR SINE MIR 13 150 -112 609 252 85 88 chrX 12412264 12412593 -150187337 + MER46C DNA MER2_type 11 338 0 277 248 0 48 chrX 12412593 12412698 -150187232 + MIR SINE MIR 153 252 -10 891 261 102 74 chrX 12412886 12413406 -150186524 - L1ME2 LINE L1 -96 6025 5484 1933 138 34 17 chrX 12413406 12413704 -150186226 - AluSx SINE Alu -9 303 1 891 261 102 74 chrX 12413704 12413809 -150186121 - L1ME2 LINE L1 -637 5484 5384 22 0 0 0 chrX 12413861 12413883 -150186047 + AT_rich Low_complexity Low_complexity 1 22 0 4514 180 44 2 chrX 12413947 12414758 -150185172 + MER21B LTR ERV1 19 863 0 2212 91 39 0 chrX 12414885 12415170 -150184760 - AluSx SINE Alu -16 296 1 477 214 140 39 chrX 12415576 12415754 -150184176 - MIR SINE MIR -9 253 58 2387 52 49 0 chrX 12416381 12416668 -150183262 - AluY SINE Alu -10 301 1 1164 184 0 29 chrX 12416780 12416824 -150183106 + MER58A DNA MER1_type 6 50 -2370 2113 105 7 3 chrX 12416824 12417118 -150182812 - AluSc SINE Alu -14 295 1 1164 184 0 29 chrX 12417118 12417280 -150182650 + MER58A DNA MER1_type 50 206 -18 756 174 80 0 chrX 12418270 12418408 -150181522 + FRAM SINE Alu 18 166 -10 243 0 0 0 chrX 12420358 12420385 -150179545 + (T)n Simple_repeat Simple_repeat 1 27 0 1842 133 38 24 chrX 12420973 12421266 -150178664 - AluJb SINE Alu -15 297 1 337 196 39 69 chrX 12421426 12421528 -150178402 + L2 LINE L2 3171 3269 -3 1478 188 156 34 chrX 12422281 12422697 -150177233 + MLT1C LTR MaLR 1 467 0 2182 119 3 0 chrX 12425405 12425708 -150174222 + AluSx SINE Alu 1 304 -8 240 35 0 0 chrX 12425708 12425737 -150174193 + (TA)n Simple_repeat Simple_repeat 1 29 0 391 241 11 103 chrX 12425838 12426012 -150173918 - MIR SINE MIR -2 260 103 1814 191 103 26 chrX 12426330 12426759 -150173171 - MLT1C LTR MaLR 0 467 6 1101 110 79 0 chrX 12427595 12427759 -150172171 - FRAM SINE Alu 0 176 1 356 282 31 30 chrX 12428449 12428584 -150171346 + MIR SINE MIR 18 151 -63 2440 25 14 0 chrX 12429968 12430243 -150169687 + L1PA4 LINE L1 5874 6152 -3 25 0 0 0 chrX 12430275 12430300 -150169630 + AT_rich Low_complexity Low_complexity 1 25 0 341 57 0 19 chrX 12430656 12430709 -150169221 + (TA)n Simple_repeat Simple_repeat 1 52 0 357 167 11 22 chrX 12430749 12430839 -150169091 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 264 219 98 12 chrX 12430842 12430924 -150169006 - L1MC4 LINE L1 -1339 6703 6615 241 288 88 0 chrX 12430854 12430934 -150168996 + L1MC4 LINE L1 6614 6700 -1342 * 2427 68 3 0 chrX 12432224 12432518 -150167412 - AluSg SINE Alu -15 295 1 2388 106 0 0 chrX 12433058 12433369 -150166561 + AluSx SINE Alu 1 311 -1 647 172 115 73 chrX 12434093 12434285 -150165645 - MER58C DNA MER1_type -15 200 1 663 249 59 6 chrX 12438242 12438411 -150161519 - MER5B DNA MER1_type 0 178 1 259 228 33 22 chrX 12439041 12439133 -150160797 + CT-rich Low_complexity Low_complexity 5 97 0 343 221 145 15 chrX 12439470 12439601 -150160329 + L1ME LINE L1 5636 5783 -338 304 222 0 122 chrX 12439671 12439721 -150160209 - L2 LINE L2 -9 3263 3227 1087 166 155 7 chrX 12439721 12439999 -150159931 + MER33 DNA MER1_type 3 321 -3 304 222 0 122 chrX 12439999 12440038 -150159892 - L2 LINE L2 -45 3227 3185 910 210 186 32 chrX 12440520 12440768 -150159162 - MLT1J LTR MaLR -1 510 302 1366 125 31 58 chrX 12440768 12440992 -150158938 - MER20 DNA MER1_type -1 218 1 910 210 186 32 chrX 12440992 12441152 -150158778 - MLT1J LTR MaLR -209 302 39 1060 154 58 43 chrX 12441566 12441774 -150158156 - MER20 DNA MER1_type -7 212 2 238 309 180 36 chrX 12442414 12442997 -150156933 + L2 LINE L2 1335 2001 -1313 2483 217 14 4 chrX 12443162 12443678 -150156252 + L1MA2 LINE L1 2429 2949 -3197 1913 145 33 44 chrX 12443670 12444036 -150155894 + L1MA2 LINE L1 3601 3962 -2184 * 7509 122 25 9 chrX 12444024 12446059 -150153871 + L1MA2 LINE L1 4233 6304 0 282 269 0 0 chrX 12446215 12446282 -150153648 - LTR16A LTR ERVL -13 437 371 4588 131 12 3 chrX 12446283 12446311 -150153619 + L1PA16 LINE L1 5487 5513 -653 2220 63 0 31 chrX 12446311 12446598 -150153332 + AluSx SINE Alu 33 310 -2 4588 131 12 3 chrX 12446598 12447241 -150152689 + L1PA16 LINE L1 5513 6164 -2 691 236 33 65 chrX 12447277 12447323 -150152607 - LTR16A LTR ERVL -80 370 324 1064 160 12 115 chrX 12447323 12447567 -150152363 - MER20 DNA MER1_type 0 219 1 691 236 33 65 chrX 12447567 12447795 -150152135 - LTR16A LTR ERVL -126 324 105 1902 168 0 0 chrX 12450908 12451194 -150148736 - AluJo SINE Alu -23 289 4 442 218 0 0 chrX 12451203 12451281 -150148649 - AluJ/FRAM SINE Alu -18 294 217 25 0 0 0 chrX 12451337 12451362 -150148568 + AT_rich Low_complexity Low_complexity 1 25 0 1515 174 184 56 chrX 12451812 12451860 -150148070 - MER39 LTR ERV1 0 707 667 707 266 120 31 chrX 12451860 12452375 -150147555 - MER34B LTR ERV1 0 565 5 1515 174 184 56 chrX 12452375 12452834 -150147096 - MER39 LTR ERV1 -40 667 7 850 227 11 6 chrX 12453664 12453840 -150146090 + MER5B DNA MER1_type 1 177 -1 194 203 0 17 chrX 12453999 12454058 -150145872 + T-rich Low_complexity Low_complexity 2 59 0 222 310 150 9 chrX 12454070 12454183 -150145747 + MIR SINE MIR 2 130 -132 1141 170 38 5 chrX 12454198 12454410 -150145520 + MER20 DNA MER1_type 1 219 0 584 274 68 5 chrX 12454416 12454606 -150145324 + MIR SINE MIR 21 222 -40 1805 88 42 11 chrX 12455014 12455277 -150144653 - L1PA10 LINE L1 -5 6163 5893 351 284 39 26 chrX 12455321 12455476 -150144454 - L2 LINE L2 -1018 2296 2140 472 145 0 0 chrX 12455830 12455913 -150144017 - L1MB8 LINE L1 0 6178 6096 6295 131 15 6 chrX 12456067 12457213 -150142717 - L1MA6 LINE L1 0 6300 5150 4496 156 16 7 chrX 12457215 12458042 -150141888 + L1MA6 LINE L1 4309 5142 -1004 241 130 56 74 chrX 12458430 12458484 -150141446 + FLAM SINE Alu 75 127 -6 1009 83 83 0 chrX 12458565 12458722 -150141208 - L1PA15 LINE L1 -1 6164 5995 197 182 114 0 chrX 12459156 12459200 -150140730 - L2 LINE L2 0 3313 3265 357 294 55 31 chrX 12459523 12459686 -150140244 - MER5B DNA MER1_type -10 168 2 557 263 29 11 chrX 12459710 12459885 -150140045 - MER5B DNA MER1_type 0 178 1 925 196 14 29 chrX 12460554 12460763 -150139167 + MER3 DNA MER1_type 4 209 0 396 0 0 0 chrX 12461231 12461275 -150138655 + (TG)n Simple_repeat Simple_repeat 2 45 0 382 202 164 0 chrX 12461512 12461616 -150138314 + MIR SINE MIR 128 248 -14 2823 103 21 28 chrX 12461649 12462084 -150137846 - Tigger2a DNA MER2_type -2 432 1 2893 167 21 6 chrX 12464212 12464745 -150135185 - L1MA6 LINE L1 0 6300 5760 417 293 30 24 chrX 12464788 12464952 -150134978 + L1ME2 LINE L1 195 359 -5846 322 310 35 17 chrX 12464960 12465076 -150134854 + L1ME2 LINE L1 261 378 -6018 328 271 0 102 chrX 12465130 12465307 -150134623 + L1ME2 LINE L1 508 666 -5539 1358 271 70 41 chrX 12465431 12466306 -150133624 + L1ME2 LINE L1 660 1559 -4837 354 74 0 0 chrX 12466310 12466364 -150133566 + (TTTAG)n Simple_repeat Simple_repeat 2 55 0 2203 95 0 3 chrX 12466364 12466649 -150133281 - AluSx SINE Alu -28 284 1 1059 296 58 18 chrX 12466655 12467202 -150132728 + L1ME2 LINE L1 1648 2216 -4180 251 241 92 0 chrX 12467266 12467353 -150132577 + L1 LINE L1 4723 4817 -1329 667 235 131 0 chrX 12467420 12467603 -150132327 + L1M4 LINE L1 4017 4223 -1923 541 151 11 11 chrX 12467604 12467697 -150132233 + L1M4 LINE L1 4868 4960 -1186 639 234 7 0 chrX 12467699 12467853 -150132077 + L1ME2 LINE L1 4636 4790 -1425 667 342 92 22 chrX 12467866 12468270 -150131660 - LTR16A LTR ERVL 0 450 19 1029 227 140 17 chrX 12468515 12468861 -150131069 + L1ME2 LINE L1 5825 6188 -45 2182 111 26 40 chrX 12469867 12470247 -150129683 + THE1C LTR MaLR 1 375 0 225 94 0 0 chrX 12470439 12470471 -150129459 + (TA)n Simple_repeat Simple_repeat 1 32 0 1110 156 64 0 chrX 12470471 12470689 -150129241 - L1MA7 LINE L1 -76 6215 5984 312 230 35 11 chrX 12470689 12470776 -150129154 + MER94 DNA DNA 24 112 -22 414 214 68 29 chrX 12472232 12472335 -150127595 - LTR16C LTR ERVL 0 491 385 241 234 160 21 chrX 12472586 12472680 -150127250 - MER5A DNA MER1_type -82 107 1 306 239 134 21 chrX 12474233 12474375 -150125555 - LTR16A1 LTR ERVL -153 304 147 486 239 44 29 chrX 12474520 12474761 -150125169 + MER45C DNA AcHobo 2 256 -697 460 247 18 125 chrX 12475059 12475318 -150124612 + MER45C DNA AcHobo 722 953 0 267 79 0 0 chrX 12475330 12475368 -150124562 + (TA)n Simple_repeat Simple_repeat 2 39 0 2187 98 17 0 chrX 12475368 12475663 -150124267 - AluSx SINE Alu -12 300 1 202 254 190 95 chrX 12475766 12475900 -150124030 - MIR SINE MIR 0 262 142 2196 118 18 3 chrX 12475900 12476239 -150123691 + L1PB4 LINE L1 5809 6152 -4 202 254 190 95 chrX 12476239 12476336 -150123594 - MIR SINE MIR -120 142 9 1850 165 54 0 chrX 12476336 12476705 -150123225 - Charlie5 DNA MER1_type 0 2624 2236 639 204 0 15 chrX 12476701 12476833 -150123097 - Charlie5 DNA MER1_type -2482 130 1 * 284 235 0 0 chrX 12477022 12477073 -150122857 - L2 LINE L2 -22 3291 3241 588 310 61 32 chrX 12477147 12477457 -150122473 - MLT1C LTR MaLR -1 466 148 261 235 59 0 chrX 12477426 12477477 -150122453 - 5S rRNA rRNA -60 61 8 * 895 200 40 0 chrX 12477489 12477664 -150122266 - MLT1C LTR MaLR -285 182 1 420 309 71 65 chrX 12478574 12478956 -150120974 + L1MC/D LINE L1 4951 5334 -812 2337 90 0 7 chrX 12478988 12479287 -150120643 - AluSg SINE Alu -11 299 3 635 341 39 14 chrX 12479430 12479788 -150120142 + L1MC/D LINE L1 5451 5817 -1991 465 341 20 16 chrX 12479979 12480228 -150119702 + MIR SINE MIR 13 262 0 1087 204 0 0 chrX 12480436 12480632 -150119298 - L1MB5 LINE L1 -7 6167 5972 2497 150 61 2 chrX 12480634 12481107 -150118823 - L1MB5 LINE L1 -418 5756 5256 443 205 0 24 chrX 12481209 12481292 -150118638 + MER58 DNA MER1_type 129 2414 -6 1126 230 9 0 chrX 12482266 12482479 -150117451 - MER58A DNA MER1_type -6 218 4 234 0 0 0 chrX 12482833 12482859 -150117071 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 229 236 35 103 chrX 12483233 12483407 -150116523 + L1 LINE L1 4887 5048 -1098 1899 134 20 17 chrX 12483624 12483916 -150116014 + AluJb SINE Alu 6 298 -14 699 296 112 33 chrX 12483964 12484416 -150115514 + L1ME4a LINE L1 5272 5780 -341 1124 204 107 47 chrX 12484416 12484612 -150115318 + MER58B DNA MER1_type 5 229 -2191 2407 76 0 3 chrX 12484612 12484913 -150115017 - AluY SINE Alu -9 302 3 1124 204 107 47 chrX 12484913 12485034 -150114896 + MER58B DNA MER1_type 229 341 0 699 296 112 33 chrX 12485034 12485174 -150114756 + L1ME4a LINE L1 5780 5907 -214 317 218 26 0 chrX 12485253 12485331 -150114599 + MER103 DNA DNA 76 155 -11 540 0 0 0 chrX 12485775 12485835 -150114095 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1116 205 7 29 chrX 12485993 12486266 -150113664 - L1MD3 LINE L1 0 7995 7729 874 201 6 6 chrX 12486601 12486760 -150113170 + MER45A DNA AcHobo 20 178 0 22 35 0 0 chrX 12487125 12487154 -150112776 + AT_rich Low_complexity Low_complexity 1 29 0 291 243 14 0 chrX 12487671 12487741 -150112189 + MLT1C-int LTR MaLR 1299 1369 -2 1933 200 51 16 chrX 12487743 12488194 -150111736 + MLT1C LTR MaLR 1 467 0 360 251 5 112 chrX 12488441 12488656 -150111274 - L1ME4a LINE L1 -206 5915 5724 242 235 29 0 chrX 12489272 12489340 -150110590 + L1MC/D LINE L1 4471 4540 -1606 316 289 78 43 chrX 12489492 12489890 -150110040 + L1MC/D LINE L1 4678 5089 -1057 502 324 92 13 chrX 12490122 12490502 -150109428 + L1MC/D LINE L1 5355 5764 -2044 33 56 0 0 chrX 12490846 12490900 -150109030 + AT_rich Low_complexity Low_complexity 1 54 0 444 310 63 40 chrX 12490995 12491295 -150108635 - L1ME4a LINE L1 -236 5885 5579 3234 200 48 51 chrX 12492856 12493901 -150106029 - L1ME2 LINE L1 -1 6163 5118 222 37 0 0 chrX 12493912 12493939 -150105991 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7527 11 0 0 chrX 12493966 12494821 -150105109 - L1PA2 LINE L1 0 6155 5301 3758 30 2 0 chrX 12494821 12495282 -150104648 + L1P LINE L1 4875 5336 -810 549 221 95 32 chrX 12495334 12495439 -150104491 - L1ME2 LINE L1 -1099 5047 4950 1930 202 17 6 chrX 12495439 12495800 -150104130 - MLT1A1 LTR MaLR 0 365 1 549 221 95 32 chrX 12495800 12495884 -150104046 - L1ME2 LINE L1 -1196 4950 4846 1387 227 12 15 chrX 12595885 12596294 -150003636 + L1 LINE L1 2158 2565 -3581 4108 39 0 0 chrX 12596296 12596787 -150003143 + L1PA4 LINE L1 5662 6152 -3 1962 59 0 8 chrX 12596797 12597052 -150002878 + L1PA5 LINE L1 5896 6148 -6 1478 96 74 0 chrX 12597186 12597415 -150002515 - L1P LINE L1 -5151 995 750 30829 51 4 1 chrX 12597428 12602265 -149997665 + L1PA5 LINE L1 1300 6153 -1 3131 136 9 154 chrX 12602267 12602526 -149997404 + L1PA15-16 LINE L1 1942 2237 -4612 3991 30 0 0 chrX 12602526 12602996 -149996934 + L1PA3 LINE L1 5685 6154 -1 3131 136 9 154 chrX 12602996 12603324 -149996606 + L1PA15-16 LINE L1 2237 2379 -4470 1870 87 23 0 chrX 12603324 12603589 -149996341 - L1PA10 LINE L1 0 6168 5898 3131 136 9 154 chrX 12603589 12603818 -149996112 + L1PA15-16 LINE L1 2379 2640 -4209 4545 76 2 13 chrX 12603918 12604533 -149995397 + L1PA13 LINE L1 5552 6159 -4 1943 148 0 0 chrX 12605116 12605400 -149994530 - AluSx SINE Alu -28 284 1 2268 259 98 20 chrX 12605480 12606596 -149993334 - L1ME2 LINE L1 0 6164 4964 24933 148 14 29 chrX 12606815 12609962 -149989968 - L1PA10 LINE L1 -13 6470 3277 833 92 77 8 chrX 12609962 12610092 -149989838 - MER85 DNA T2_type 0 139 1 24933 148 14 29 chrX 12610092 12611324 -149988606 - L1PA10 LINE L1 -3206 3277 2144 295 100 20 0 chrX 12611324 12611374 -149988556 + MADE1 DNA Mariner 30 80 0 24933 148 14 29 chrX 12611374 12612703 -149987227 - L1PA10 LINE L1 -4339 2144 796 317 270 92 49 chrX 12613542 12613705 -149986225 + L1MEd LINE L1 12 181 -5938 1270 296 74 28 chrX 12613804 12614304 -149985626 + MLT1G1 LTR MaLR 73 595 0 739 201 0 34 chrX 12614349 12614626 -149985304 + MER2 DNA MER2_type 2 344 -1 940 287 54 85 chrX 12614632 12614725 -149985205 + L1MEd LINE L1 283 377 -5742 2010 146 44 14 chrX 12614725 12615089 -149984841 + THE1C LTR MaLR 1 375 0 940 287 54 85 chrX 12615089 12615924 -149984006 + L1MEd LINE L1 377 1182 -4937 210 307 69 0 chrX 12615959 12616060 -149983870 - MIR SINE MIR -56 206 99 277 253 13 27 chrX 12616107 12616182 -149983748 + L2 LINE L2 1857 1930 -1384 1813 175 21 0 chrX 12616269 12616601 -149983329 - L1PA16 LINE L1 -16 6150 5812 13172 157 35 8 chrX 12616701 12618868 -149981062 - L1M1 LINE L1 -5319 2246 20 279 276 175 4 chrX 12618888 12619134 -149980796 - L1MDb LINE L1 -2889 3240 2953 330 87 0 0 chrX 12619503 12619549 -149980381 + (TG)n Simple_repeat Simple_repeat 2 47 0 375 292 107 14 chrX 12620037 12620455 -149979475 - L1MDb LINE L1 -4910 1209 741 248 94 0 0 chrX 12620580 12620612 -149979318 - L1MDb LINE L1 -5492 627 596 235 330 43 9 chrX 12620958 12621073 -149978857 - L1MDb LINE L1 -5946 173 55 2825 175 32 17 chrX 12621215 12621804 -149978126 - L1MD3 LINE L1 -1 7994 7397 637 196 44 6 chrX 12621984 12622142 -149977788 - L1MD2 LINE L1 -2 6357 6194 436 155 0 0 chrX 12622318 12622389 -149977541 - MLT1D LTR MaLR 0 505 435 313 354 11 19 chrX 12622600 12622772 -149977158 - MIR SINE MIR -62 146 10 187 339 51 0 chrX 12623123 12623182 -149976748 - L2 LINE L2 -3 3310 3249 241 347 0 0 chrX 12623281 12623356 -149976574 + T-rich Low_complexity Low_complexity 72 146 0 22 0 0 0 chrX 12623985 12624007 -149975923 + AT_rich Low_complexity Low_complexity 1 22 0 204 167 24 0 chrX 12624424 12624466 -149975464 + (TA)n Simple_repeat Simple_repeat 2 44 0 210 378 0 14 chrX 12624878 12624952 -149974978 + MIR3 SINE MIR 6 78 -130 2378 77 3 3 chrX 12625066 12625363 -149974567 - AluSg SINE Alu -12 298 2 238 370 94 0 chrX 12625413 12625540 -149974390 + MIR3 SINE MIR 40 178 -30 243 0 0 0 chrX 12626393 12626420 -149973510 + (T)n Simple_repeat Simple_repeat 1 27 0 195 219 24 0 chrX 12626962 12627003 -149972927 - MIR SINE MIR -5 257 216 5029 148 9 1 chrX 12627315 12628170 -149971760 + L1P LINE L1 4529 5390 -756 4098 122 61 0 chrX 12628273 12628911 -149971019 - L1P LINE L1 -5460 686 10 1115 265 68 31 chrX 12628919 12629729 -149970201 - L1PBb LINE L1 -4913 1935 1028 420 365 62 60 chrX 12630268 12630783 -149969147 - L1PBb LINE L1 -6318 531 16 222 245 19 0 chrX 12630811 12630864 -149969066 - MER5A DNA MER1_type 0 189 136 323 245 19 38 chrX 12631608 12631714 -149968216 + GA-rich Low_complexity Low_complexity 2 105 0 593 245 80 7 chrX 12632370 12632521 -149967409 - MIR SINE MIR -21 241 80 204 314 0 0 chrX 12633050 12633101 -149966829 + L3 LINE CR1 1524 1574 -3 1006 207 37 5 chrX 12633281 12633498 -149966432 - MER58A DNA MER1_type 0 224 1 514 162 0 0 chrX 12635024 12635123 -149964807 - L1MA4 LINE L1 -11 6289 6191 218 318 146 9 chrX 12635282 12635392 -149964538 - MIR SINE MIR -6 256 132 585 185 65 98 chrX 12635431 12635615 -149964315 - MLT1E LTR MaLR -2 591 414 1564 148 4 0 chrX 12635622 12635893 -149964037 - L1MA3 LINE L1 0 6305 6034 4586 109 26 3 chrX 12635902 12636869 -149963061 - L1MA3 LINE L1 -369 5936 4949 1308 254 92 25 chrX 12636881 12637274 -149962656 - MLT1E LTR MaLR -174 419 1 666 255 127 110 chrX 12637952 12638407 -149961523 + L1MC4 LINE L1 5672 6118 -1690 725 84 9 0 chrX 12638407 12638514 -149961416 - L1MA6 LINE L1 0 6300 6193 666 255 127 110 chrX 12638514 12638749 -149961181 + L1MC4 LINE L1 6118 6348 -1460 2066 129 7 3 chrX 12638749 12639052 -149960878 + AluSx SINE Alu 1 304 -8 666 255 127 110 chrX 12639052 12639581 -149960349 + L1MC4 LINE L1 6348 6872 -936 510 260 59 18 chrX 12639634 12639878 -149960052 + L1MC4 LINE L1 7000 7219 -742 7197 126 16 2 chrX 12639898 12641419 -149958511 - L1MA2 LINE L1 0 6304 4765 634 244 32 42 chrX 12641536 12641819 -149958111 + L1MC5 LINE L1 7313 7592 -369 22 0 0 0 chrX 12643176 12643198 -149956732 + AT_rich Low_complexity Low_complexity 1 22 0 423 303 42 21 chrX 12643258 12643496 -149956434 - L1ME4a LINE L1 -268 5853 5611 455 222 56 19 chrX 12643747 12643855 -149956075 - MER94 DNA DNA 0 134 23 539 146 35 15 chrX 12644660 12645140 -149954790 + (TA)n Simple_repeat Simple_repeat 1 489 0 1087 122 0 0 chrX 12645537 12645684 -149954246 + AluJb SINE Alu 150 296 -16 1105 221 52 109 chrX 12646744 12647164 -149952766 + L1ME2 LINE L1 5760 6155 -7 235 368 58 37 chrX 12647422 12647612 -149952318 - L3 LINE CR1 -984 593 400 586 318 57 14 chrX 12647895 12648175 -149951755 + L1MEd LINE L1 67 358 -5761 356 269 46 9 chrX 12648505 12648613 -149951317 + L1MEd LINE L1 17 128 -5991 225 272 48 48 chrX 12648927 12649030 -149950900 + MLT2E LTR ERVL 40 142 -486 1080 259 64 73 chrX 12649481 12650230 -149949700 + L1MEd LINE L1 528 1302 -4965 2114 91 0 0 chrX 12650230 12650504 -149949426 + AluSg SINE Alu 33 306 -4 1080 259 64 73 chrX 12650504 12650590 -149949340 + L1MEd LINE L1 1302 1387 -4880 215 146 0 73 chrX 12650836 12650932 -149948998 + (TA)n Simple_repeat Simple_repeat 1 89 0 209 248 208 10 chrX 12652513 12652614 -149947316 + L2 LINE L2 3193 3313 0 486 304 158 25 chrX 12652614 12652854 -149947076 - L2 LINE L2 -342 2972 2701 1955 195 23 99 chrX 12652865 12653420 -149946510 - MLT2B1 LTR ERVL -7 513 1 23 68 0 0 chrX 12653996 12654040 -149945890 + AT_rich Low_complexity Low_complexity 1 44 0 632 295 31 22 chrX 12654521 12654826 -149945104 + MLT1H LTR MaLR 1 353 -196 2186 188 56 25 chrX 12654963 12655448 -149944482 + MLT1D LTR MaLR 1 500 -5 212 241 0 69 chrX 12656482 12656540 -149943390 - L2 LINE L2 -8 3305 3252 14023 138 25 4 chrX 12656733 12659043 -149940887 + L1M4c LINE L1 13 2371 -4013 2309 127 5 5 chrX 12659045 12659415 -149940515 + L1MB3 LINE L1 5806 6175 -8 1248 185 9 0 chrX 12659796 12660007 -149939923 + AluJo SINE Alu 86 298 -14 655 313 34 38 chrX 12660090 12660389 -149939541 - LTR16A1 LTR ERVL 0 457 177 385 303 138 7 chrX 12661388 12661540 -149938390 + MER5B DNA MER1_type 1 172 -6 282 271 188 0 chrX 12662993 12663089 -149936841 + MIR SINE MIR 79 192 -70 296 259 191 30 chrX 12664137 12664268 -149935662 + L2 LINE L2 3121 3272 0 32 26 0 0 chrX 12664700 12664739 -149935191 + AT_rich Low_complexity Low_complexity 1 39 0 315 203 43 0 chrX 12665540 12665609 -149934321 - MLT1K LTR MaLR 0 588 517 748 159 7 0 chrX 12665621 12665772 -149934158 + L1MA7 LINE L1 6127 6278 -13 21 57 0 0 chrX 12666124 12666159 -149933771 + GC_rich Low_complexity Low_complexity 1 35 0 648 281 20 10 chrX 12667604 12667803 -149932127 - LTR16A1 LTR ERVL -69 388 188 326 338 0 0 chrX 12669199 12669353 -149930577 + GA-rich Low_complexity Low_complexity 1 154 0 411 225 101 11 chrX 12669813 12669902 -149930028 - L2 LINE L2 -8 3264 3168 1000 290 54 23 chrX 12670544 12670934 -149928996 + MLT1I LTR MaLR 3 404 -5 351 380 0 8 chrX 12670934 12671063 -149928867 + MER5B DNA MER1_type 6 133 -45 357 174 265 0 chrX 12671092 12671190 -149928740 + L2 LINE L2 3190 3313 0 2824 22 0 6 chrX 12671878 12672198 -149927732 - AluYb8 SINE Alu 0 318 1 293 131 16 0 chrX 12672585 12672646 -149927284 + (TA)n Simple_repeat Simple_repeat 1 62 0 2156 110 0 23 chrX 12672961 12673262 -149926668 - AluSg SINE Alu -16 294 1 568 204 0 0 chrX 12673669 12673767 -149926163 - Charlie4 DNA MER1_type -15 1946 1849 222 200 0 0 chrX 12674394 12674434 -149925496 + (CA)n Simple_repeat Simple_repeat 2 41 0 246 250 50 0 chrX 12674635 12674695 -149925235 + MIR SINE MIR 110 172 -90 607 210 167 0 chrX 12674906 12675068 -149924862 - MER5A DNA MER1_type 0 189 1 2300 185 8 40 chrX 12675211 12675729 -149924201 + MLT1D LTR MaLR 5 505 0 261 0 0 0 chrX 12677093 12677122 -149922808 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 191 0 0 chrX 12678582 12678629 -149921301 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 496 319 36 11 chrX 12678729 12678914 -149921016 - MIR SINE MIR -62 146 2 1089 160 21 32 chrX 12679436 12679624 -149920306 + MER5A DNA MER1_type 3 188 -1 214 375 45 0 chrX 12679717 12679805 -149920125 + L2 LINE L2 3222 3313 0 1047 167 19 33 chrX 12680229 12680439 -149919491 + MER3 DNA MER1_type 1 207 -2 379 378 0 0 chrX 12680579 12680690 -149919240 - MIR SINE MIR -68 140 30 23 0 0 0 chrX 12680935 12680958 -149918972 + AT_rich Low_complexity Low_complexity 1 23 0 283 234 36 51 chrX 12680972 12681109 -149918821 - L1ME LINE L1 -270 5894 5758 7176 51 0 2 chrX 12681174 12682415 -149917515 - L1PA7 LINE L1 -2 6152 4912 1887 134 3 62 chrX 12684692 12685013 -149914917 - AluSx SINE Alu -10 302 1 14924 87 0 12 chrX 12685184 12687302 -149912628 - L1P LINE L1 -1538 4608 2516 632 320 78 16 chrX 12687482 12687634 -149912296 - MIR SINE MIR -1 261 87 2430 219 66 11 chrX 12687634 12688196 -149911734 - MLT1E LTR MaLR 0 593 1 632 320 78 16 chrX 12688196 12688287 -149911643 - MIR SINE MIR -175 87 3 1186 274 90 47 chrX 12688378 12688888 -149911042 - MLT1H LTR MaLR -14 535 4 347 324 9 0 chrX 12689714 12689825 -149910105 + MIR3 SINE MIR 54 165 -43 1381 85 0 5 chrX 12689825 12690013 -149909917 - L1PB1 LINE L1 -386 5765 5579 2652 99 0 5 chrX 12690013 12690394 -149909536 + L1PB1 LINE L1 5771 6150 -1 1026 180 62 19 chrX 12690613 12690824 -149909106 + MER58A DNA MER1_type 4 223 -1 2366 73 10 7 chrX 12691723 12692025 -149907905 - AluY SINE Alu -8 303 1 274 397 0 0 chrX 12692294 12692410 -149907520 + L2 LINE L2 3138 3253 -19 21 0 0 0 chrX 12692652 12692673 -149907257 + AT_rich Low_complexity Low_complexity 1 21 0 2407 149 33 16 chrX 12692744 12693167 -149906763 + MSTB1 LTR MaLR 1 430 -2 294 29 0 0 chrX 12695524 12695559 -149904371 + (CA)n Simple_repeat Simple_repeat 1 35 0 1928 194 99 3 chrX 12696135 12696527 -149903403 + MER63B DNA MER1_type 1 430 -6 201 290 130 42 chrX 12697046 12697284 -149902646 + L2 LINE L2 2226 2484 -830 378 0 0 0 chrX 12698393 12698435 -149901495 + (CA)n Simple_repeat Simple_repeat 2 43 0 537 259 56 0 chrX 12699114 12699257 -149900673 + MIR SINE MIR 51 201 -61 7412 161 18 7 chrX 12699308 12701525 -149898405 + L1MA4A LINE L1 3881 6122 -181 574 129 0 0 chrX 12701528 12701621 -149898309 + L1MA4A LINE L1 6188 6280 -23 303 242 94 76 chrX 12701690 12701976 -149897954 - MLT1H LTR MaLR -97 452 92 4274 108 24 0 chrX 12702025 12702653 -149897277 - L1PA15 LINE L1 0 6165 5523 1664 124 0 11 chrX 12702729 12702994 -149896936 - L1PB3 LINE L1 -2 6152 5891 4197 144 6 10 chrX 12703042 12704444 -149895486 - L1PB3 LINE L1 -267 5887 4492 582 109 50 10 chrX 12704444 12704545 -149895385 - MLT1H LTR MaLR -443 106 2 456 239 18 0 chrX 12704546 12704655 -149895275 + L1ME3A LINE L1 5562 5672 -498 334 205 0 0 chrX 12704685 12704763 -149895167 - L1PB3 LINE L1 -123 6031 5954 1738 207 33 35 chrX 12704786 12705241 -149894689 + L1ME3A LINE L1 5709 6162 -8 1226 278 53 13 chrX 12705930 12706308 -149893622 - MLT1I LTR MaLR -16 393 1 231 379 65 8 chrX 12706474 12706598 -149893332 - MIR3 SINE MIR -21 187 57 333 102 0 0 chrX 12706837 12706896 -149893034 + (CA)n Simple_repeat Simple_repeat 2 60 0 575 322 47 32 chrX 12707236 12707978 -149891952 - L1M4 LINE L1 -1783 4363 3611 795 40 0 0 chrX 12708018 12708117 -149891813 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 447 289 19 66 chrX 12708278 12708489 -149891441 - MLT1J2 LTR MaLR 0 450 250 18612 31 1 0 chrX 12708524 12711544 -149888386 - L1PA3 LINE L1 0 6155 3136 24 0 0 0 chrX 12711620 12711644 -149888286 + AT_rich Low_complexity Low_complexity 1 24 0 328 240 92 5 chrX 12711665 12711861 -149888069 - L1M4 LINE L1 -2866 3280 3068 318 266 9 80 chrX 12712805 12712918 -149887012 - MIR3 SINE MIR -2 206 102 986 229 47 5 chrX 12713061 12713275 -149886655 + MER58A DNA MER1_type 2 224 0 329 284 64 9 chrX 12715049 12715158 -149884772 + MER5A DNA MER1_type 7 121 -68 2233 110 7 0 chrX 12715610 12715975 -149883955 - AluSp SINE Alu 0 367 1 205 318 91 18 chrX 12716153 12716263 -149883667 - L2 LINE L2 0 3272 3155 1285 213 8 0 chrX 12717127 12717385 -149882545 + MLT1F1 LTR MaLR 1 260 -307 474 176 0 137 chrX 12720105 12720236 -149879694 - MER81 DNA DNA 0 114 2 669 160 206 0 chrX 12720238 12720369 -149879561 + MER5B DNA MER1_type 16 173 -5 345 263 63 11 chrX 12721081 12721176 -149878754 - L2 LINE L2 0 3272 3173 302 253 0 0 chrX 12721374 12721461 -149878469 - L1MC4 LINE L1 -1339 6703 6617 23 54 0 0 chrX 12722108 12722145 -149877785 + AT_rich Low_complexity Low_complexity 1 37 0 1145 207 28 0 chrX 12722888 12723105 -149876825 - MER58A DNA MER1_type 0 224 2 650 251 54 18 chrX 12723715 12723994 -149875936 - L1MDa LINE L1 -4627 1913 1625 224 30 30 0 chrX 12723995 12724028 -149875902 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 10760 43 15 32 chrX 12724031 12725391 -149874539 - SVA Other Other -20 1366 29 1650 216 261 10 chrX 12725508 12726124 -149873806 - LTR50 LTR ERVL -24 771 1 27 49 0 0 chrX 12726157 12726198 -149873732 + AT_rich Low_complexity Low_complexity 1 41 0 867 145 34 191 chrX 12726299 12726561 -149873369 - MER58A DNA MER1_type 0 224 4 623 270 0 110 chrX 12726572 12726639 -149873291 - MER5B DNA MER1_type 0 178 105 1957 125 0 39 chrX 12726639 12726944 -149872986 + AluJb SINE Alu 3 295 -17 623 270 0 110 chrX 12726944 12727076 -149872854 - MER5B DNA MER1_type -73 105 1 249 315 43 0 chrX 12727342 12727434 -149872496 + L2 LINE L2 3218 3313 0 2348 41 38 54 chrX 12728363 12728679 -149871251 + AluY SINE Alu 1 311 0 400 291 133 13 chrX 12728705 12728856 -149871074 - MER5B DNA MER1_type -4 174 6 281 311 41 41 chrX 12729593 12729812 -149870118 + MLT1J1 LTR MaLR 1 219 -231 2340 84 7 0 chrX 12730293 12730590 -149869340 - AluSp SINE Alu -13 300 2 2985 249 82 58 chrX 12730687 12730801 -149869129 + L2 LINE L2 1973 2083 -1230 2541 90 3 3 chrX 12730801 12731157 -149868773 - L1PA8 LINE L1 -7 6165 5810 2985 249 82 58 chrX 12731157 12731913 -149868017 + L2 LINE L2 2083 2898 -415 1784 158 0 63 chrX 12731913 12732230 -149867700 - AluJb SINE Alu -13 299 3 2985 249 82 58 chrX 12732230 12732657 -149867273 + L2 LINE L2 2898 3313 0 659 285 311 10 chrX 12732933 12733156 -149866774 - LTR50 LTR ERVL 0 795 640 2982 154 22 7 chrX 12733156 12733709 -149866221 + L1MB7 LINE L1 5612 6172 -12 659 285 311 10 chrX 12733709 12734071 -149865859 - LTR50 LTR ERVL -155 640 34 261 0 0 0 chrX 12734516 12734545 -149865385 + (CA)n Simple_repeat Simple_repeat 2 30 0 1571 313 29 22 chrX 12735035 12735726 -149864204 - ERVL LTR ERVL -848 4916 4221 547 259 117 10 chrX 12735726 12735923 -149864007 - LTR50 LTR ERVL -572 223 6 286 306 90 0 chrX 12736070 12736181 -149863749 + MIR SINE MIR 82 202 -60 976 174 27 49 chrX 12736298 12736522 -149863408 + MER20 DNA MER1_type 1 219 0 323 220 0 0 chrX 12736914 12736973 -149862957 - MIR SINE MIR -20 242 184 292 288 199 0 chrX 12737621 12737767 -149862163 + MIR SINE MIR 84 258 -4 1412 282 83 1 chrX 12737798 12738306 -149861624 + L1MD3 LINE L1 6149 6343 -1 315 261 11 0 chrX 12738448 12738540 -149861390 + L1ME LINE L1 5565 5657 -464 2309 96 0 3 chrX 12738615 12738917 -149861013 + AluSx SINE Alu 1 301 -11 5938 139 25 2 chrX 12738940 12740567 -149859363 + L1MA5 LINE L1 4639 6300 0 245 248 50 10 chrX 12740698 12740799 -149859131 + L1ME LINE L1 5793 5897 -224 299 136 296 23 chrX 12743021 12743109 -149856821 + FRAM SINE Alu 55 166 0 1642 192 30 9 chrX 12743478 12743812 -149856118 + MER58B DNA MER1_type 1 341 0 189 0 0 0 chrX 12744362 12744383 -149855547 + (T)n Simple_repeat Simple_repeat 1 21 0 1418 228 42 32 chrX 12744611 12745011 -149854919 - LTR16A1 LTR ERVL 0 457 54 393 289 41 8 chrX 12746071 12746192 -149853738 - MIR SINE MIR -102 160 36 244 311 168 37 chrX 12747306 12747467 -149852463 - MIR SINE MIR -30 232 51 1349 238 32 34 chrX 12747723 12748130 -149851800 + L2 LINE L2 2908 3313 0 1313 210 20 0 chrX 12748943 12749188 -149850742 + MER58B DNA MER1_type 1 250 -91 1132 223 8 4 chrX 12749188 12749426 -149850504 - MER8 DNA MER2_type 0 239 1 338 165 48 107 chrX 12749426 12749525 -149850405 + MER58B DNA MER1_type 249 341 0 29 47 0 0 chrX 12749589 12749632 -149850298 + AT_rich Low_complexity Low_complexity 1 43 0 519 31 0 0 chrX 12750863 12750928 -149849002 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 684 302 124 11 chrX 12751292 12751640 -149848290 - L2 LINE L2 0 3313 2927 502 263 216 19 chrX 12751815 12752028 -149847902 - MIR SINE MIR -3 259 5 588 295 87 46 chrX 12753064 12753466 -149846464 - MLT1J2 LTR MaLR -10 440 13 1188 176 25 0 chrX 12753699 12753903 -149846027 - MER2 DNA MER2_type -136 209 1 608 332 108 27 chrX 12754083 12754739 -149845191 + L2 LINE L2 1498 2206 -1108 428 364 68 41 chrX 12755012 12755501 -149844429 + L2 LINE L2 2045 2546 -768 335 299 13 0 chrX 12755879 12755956 -149843974 + L2 LINE L2 3179 3256 -16 * 685 329 74 43 chrX 12755954 12756492 -149843438 + L2 LINE L2 2205 2759 -555 2492 115 6 3 chrX 12756690 12757039 -149842891 - THE1B LTR MaLR 0 364 15 9853 117 34 33 chrX 12757077 12758654 -149841276 - THE1B-int LTR MaLR -2 1578 1 2445 121 3 24 chrX 12758654 12759026 -149840904 - THE1B LTR MaLR 0 364 1 1555 265 58 27 chrX 12759026 12759513 -149840417 - MLT1H LTR MaLR -45 504 3 209 267 209 0 chrX 12759700 12759786 -149840144 + L2 LINE L2 3184 3287 -26 24 32 0 0 chrX 12759794 12759825 -149840105 + AT_rich Low_complexity Low_complexity 1 31 0 290 326 177 28 chrX 12761035 12761250 -149838680 + L3 LINE CR1 323 569 -1008 1049 209 73 0 chrX 12761251 12761457 -149838473 - MER58A DNA MER1_type -3 221 1 210 158 0 0 chrX 12762045 12762083 -149837847 + T-rich Low_complexity Low_complexity 1 38 0 1441 229 30 0 chrX 12762083 12762420 -149837510 - L1MD1 LINE L1 -79 6163 5817 22 25 0 25 chrX 12762429 12762444 -149837486 + AT_rich Low_complexity Low_complexity 1 15 -24 436 91 15 0 chrX 12762444 12762510 -149837420 + L1PA5 LINE L1 6081 6147 -7 22 25 0 25 chrX 12762510 12762534 -149837396 + AT_rich Low_complexity Low_complexity 15 39 0 937 192 22 6 chrX 12762576 12762758 -149837172 + MER5A DNA MER1_type 5 189 0 660 253 13 6 chrX 12762827 12762985 -149836945 - MER5B DNA MER1_type -19 159 1 306 0 0 0 chrX 12763253 12763287 -149836643 + (CA)n Simple_repeat Simple_repeat 2 35 0 450 259 71 87 chrX 12763587 12763980 -149835950 + L1 LINE L1 3084 3470 -2676 1658 66 0 0 chrX 12764115 12764327 -149835603 - L1PA6 LINE L1 -3 6151 5940 1294 177 96 104 chrX 12764624 12765019 -149834911 - MSTD LTR MaLR 0 396 5 309 303 30 0 chrX 12765204 12765335 -149834595 - HsTC2 DNA Tc2 -1042 856 722 2094 106 51 17 chrX 12765335 12765665 -149834265 + THE1B LTR MaLR 1 406 -22 624 130 56 2 chrX 12765665 12765769 -149834161 + L1MC3 LINE L1 7280 7506 -406 371 350 31 5 chrX 12765770 12765993 -149833937 - HsTC2 DNA Tc2 -1163 735 507 245 206 0 15 chrX 12766019 12766087 -149833843 - HsTC2 DNA Tc2 -1609 289 223 3322 135 148 135 chrX 12766087 12766474 -149833456 + L1MC3 LINE L1 6714 7095 -690 268 250 45 36 chrX 12766474 12766586 -149833344 + MLT1F1 LTR MaLR 35 147 -420 3322 135 148 135 chrX 12766586 12767136 -149832794 + L1MC3 LINE L1 7095 7775 -10 205 336 92 34 chrX 12767445 12767564 -149832366 + L2 LINE L2 3144 3269 -3 7318 148 36 17 chrX 12767818 12767923 -149832007 - L1MA4A LINE L1 -5 6298 6196 3608 32 0 9 chrX 12767923 12768363 -149831567 - L1PA5 LINE L1 0 6154 5719 7318 148 36 17 chrX 12768363 12768947 -149830983 - L1MA4A LINE L1 -107 6196 5625 2283 71 0 3 chrX 12768947 12769260 -149830670 - AluY SINE Alu 0 312 1 7318 148 36 17 chrX 12769260 12770917 -149829013 - L1MA4A LINE L1 -678 5625 3900 6777 136 8 3 chrX 12770917 12772963 -149826967 + L1MA2 LINE L1 4093 6147 -157 279 261 0 29 chrX 12773047 12773116 -149826814 - MER5A DNA MER1_type -111 78 12 504 276 97 31 chrX 12773185 12773413 -149826517 + MIR SINE MIR 8 250 -12 567 276 140 25 chrX 12774610 12774932 -149824998 + MLT1J1 LTR MaLR 69 427 -19 1798 175 28 0 chrX 12775245 12775565 -149824365 + MER58B DNA MER1_type 13 341 0 340 304 31 15 chrX 12775614 12775784 -149824146 + MLT1H LTR MaLR 31 175 -275 287 228 81 35 chrX 12775885 12776028 -149823902 + MLT1H LTR MaLR 379 549 0 547 221 21 41 chrX 12776899 12777069 -149822861 + MER5B DNA MER1_type 29 178 0 338 296 35 21 chrX 12777583 12777725 -149822205 - MLT1L LTR MaLR -458 157 14 466 238 166 0 chrX 12778492 12778643 -149821287 - MER5A DNA MER1_type -5 184 9 419 297 69 11 chrX 12778977 12779152 -149820778 + MER34 LTR ERV1 353 537 -5 402 219 7 88 chrX 12779488 12779625 -149820305 + MER89-int LTR ERV1 520 645 -6156 303 222 68 52 chrX 12779734 12779888 -149820042 + MER89-int LTR ERV1 743 1496 -4835 818 238 69 31 chrX 12779891 12780346 -149819584 + LTR56 LTR ERV1 1 574 -2 1513 0 0 0 chrX 12780347 12780515 -149819415 - LTR54 LTR ERV1 0 510 2553 2728 137 58 46 chrX 12780515 12780806 -149819124 + LTR45 LTR ERV1 1 302 -223 2053 127 3 3 chrX 12780806 12781106 -149818824 + AluSx SINE Alu 1 300 -12 2728 137 58 46 chrX 12781106 12781333 -149818597 + LTR45 LTR ERV1 302 525 0 1513 0 0 0 chrX 12781333 12781466 -149818464 - LTR54 LTR ERV1 2044 2554 177 294 116 0 0 chrX 12781449 12781492 -149818438 - LTR54B LTR ERV1 -355 143 101 * 1495 205 19 91 chrX 12781497 12782093 -149817837 + LTR9 LTR ERV1 2 502 -110 2498 81 0 0 chrX 12782093 12782402 -149817528 - AluSc SINE Alu 0 309 1 1495 205 19 91 chrX 12782402 12782478 -149817452 + LTR9 LTR ERV1 502 582 -30 625 162 0 43 chrX 12782479 12782596 -149817334 - LTR54B LTR ERV1 -386 112 1 273 173 39 0 chrX 12782684 12782736 -149817194 + MER67B LTR ERV1 145 198 -463 433 279 44 129 chrX 12784074 12784346 -149815584 + MLT1I LTR MaLR 98 310 -99 1172 217 33 0 chrX 12785239 12785451 -149814479 - MER58A DNA MER1_type -5 219 1 1078 285 74 16 chrX 12785708 12786073 -149813857 - MLT1J2 LTR MaLR -15 435 50 723 236 109 35 chrX 12786458 12786687 -149813243 + MIR SINE MIR 7 252 -10 198 103 0 0 chrX 12787076 12787105 -149812825 + (TG)n Simple_repeat Simple_repeat 1 29 0 427 278 77 29 chrX 12787627 12787900 -149812030 + L1ME4a LINE L1 5773 6058 -63 313 263 0 40 chrX 12788097 12788196 -149811734 + MLT1I LTR MaLR 286 380 -29 359 289 132 0 chrX 12788287 12788408 -149811522 - MIR3 SINE MIR -17 191 55 651 310 73 27 chrX 12788683 12789503 -149810427 + L1ME3 LINE L1 4518 5403 -743 1482 213 36 39 chrX 12789557 12789919 -149810011 + MLT1A2 LTR MaLR 1 361 -13 243 210 16 0 chrX 12790041 12790103 -149809827 - L1MA9 LINE L1 -36 6276 6214 346 292 41 85 chrX 12790111 12790501 -149809429 + L1ME3 LINE L1 5565 5937 -225 23 54 0 0 chrX 12790755 12790792 -149809138 + AT_rich Low_complexity Low_complexity 1 37 0 1519 140 0 4 chrX 12791370 12791599 -149808331 + AluSg/x SINE Alu 76 303 -7 17209 108 19 15 chrX 12791614 12797160 -149802770 + L1PA7 LINE L1 607 7592 0 3198 114 36 15 chrX 12797160 12797683 -149802247 + L1MA3 LINE L1 5762 6305 0 527 219 49 44 chrX 12797735 12797918 -149802012 + L1M4 LINE L1 4394 4577 -1569 29 28 0 0 chrX 12797988 12798024 -149801906 + AT_rich Low_complexity Low_complexity 1 36 0 326 238 136 77 chrX 12798579 12798757 -149801173 + HAL1 LINE L1 866 1063 -1444 2605 43 0 0 chrX 12798757 12799059 -149800871 + AluY SINE Alu 1 302 -9 326 238 136 77 chrX 12799059 12799115 -149800815 + HAL1 LINE L1 1063 1114 -1393 438 358 99 9 chrX 12799335 12799679 -149800251 + HAL1 LINE L1 1391 1765 -742 672 306 114 34 chrX 12800112 12800619 -149799311 + L1ME LINE L1 511 1058 -5472 660 242 84 30 chrX 12800624 12800922 -149799008 + L1ME LINE L1 1589 1902 -4638 258 32 0 0 chrX 12800928 12800959 -149798971 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 822 213 220 47 chrX 12801114 12801410 -149798520 + L1MC4a LINE L1 6433 6779 -1029 2073 143 15 0 chrX 12801799 12802135 -149797795 + MER2 DNA MER2_type 1 341 -3 345 223 13 28 chrX 12803111 12803203 -149796727 + MIR SINE MIR 65 142 -66 1299 205 31 96 chrX 12803221 12803607 -149796323 + MLT1A1 LTR MaLR 5 365 0 329 0 24 0 chrX 12803768 12803809 -149796121 + (CA)n Simple_repeat Simple_repeat 2 43 0 295 219 0 0 chrX 12804033 12804106 -149795824 - MER112 DNA MER1_type -92 168 96 421 233 35 52 chrX 12804571 12804687 -149795243 + MER81 DNA DNA 1 114 0 233 260 27 0 chrX 12805510 12805583 -149794347 - L1ME2 LINE L1 -54 6110 6036 1911 207 57 2 chrX 12805646 12806067 -149793863 - L1MD1 LINE L1 -5 6237 5794 358 327 9 9 chrX 12806067 12806174 -149793756 + MIR3 SINE MIR 74 180 -28 27 49 0 0 chrX 12806215 12806256 -149793674 + AT_rich Low_complexity Low_complexity 1 41 0 5727 121 25 3 chrX 12808010 12809123 -149790807 - L1PA16 LINE L1 0 6166 5041 667 251 78 18 chrX 12809128 12809347 -149790583 + L2 LINE L2 2304 2535 -779 26 64 0 0 chrX 12809392 12809439 -149790491 + AT_rich Low_complexity Low_complexity 1 47 0 342 235 88 37 chrX 12809916 12810052 -149789878 + MIR3 SINE MIR 50 192 -16 738 144 8 0 chrX 12810140 12810258 -149789672 - L1MD3 LINE L1 -30 7965 7847 398 223 61 47 chrX 12810787 12810935 -149788995 + MIR SINE MIR 103 252 -10 193 313 182 0 chrX 12810940 12811039 -149788891 + MIR3 SINE MIR 87 203 -5 244 311 106 26 chrX 12811254 12811405 -149788525 - MIR SINE MIR -43 219 57 509 264 0 16 chrX 12811629 12811750 -149788180 + MLT1J2 LTR MaLR 37 155 -295 315 271 33 57 chrX 12812044 12812166 -149787764 - MIR SINE MIR -72 190 72 3536 155 11 24 chrX 12812412 12813044 -149786886 + L1MB7 LINE L1 5542 6165 -19 277 310 84 15 chrX 12813268 12813471 -149786459 - L1M4 LINE L1 -3372 2774 2558 308 279 73 37 chrX 12813571 12813707 -149786223 - L1M4 LINE L1 -3732 2414 2274 690 57 11 0 chrX 12813754 12813842 -149786088 + L1PA5 LINE L1 11 99 -6047 * 30679 46 1 1 chrX 12813823 12817658 -149782272 + L1PA5 LINE L1 1081 4915 -1231 7438 29 6 0 chrX 12817664 12818760 -149781170 + L1PA5 LINE L1 5046 6146 -8 29 28 0 0 chrX 12818760 12818796 -149781134 + AT_rich Low_complexity Low_complexity 1 36 0 316 138 31 0 chrX 12819320 12819385 -149780545 + (TA)n Simple_repeat Simple_repeat 1 67 0 2315 93 3 10 chrX 12819385 12819686 -149780244 - AluSp SINE Alu -14 299 1 263 353 69 0 chrX 12819861 12819977 -149779953 + L2 LINE L2 2616 2739 -575 572 370 68 25 chrX 12820097 12820462 -149779468 + L2 LINE L2 2892 3272 0 317 23 0 23 chrX 12821283 12821326 -149778604 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 394 141 0 73 chrX 12823052 12823243 -149776687 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 650 112 0 74 chrX 12823290 12823649 -149776281 + (TA)n Simple_repeat Simple_repeat 1 332 0 603 136 0 61 chrX 12823708 12824055 -149775875 + (TA)n Simple_repeat Simple_repeat 1 325 0 316 138 16 65 chrX 12824038 12824161 -149775769 + (TATATG)n Simple_repeat Simple_repeat 4 120 0 * 307 285 23 0 chrX 12824380 12824510 -149775420 + L1P5 LINE L1 5299 5431 -720 440 293 113 35 chrX 12824535 12824968 -149774962 + L1ME3 LINE L1 5527 5993 -128 500 282 141 19 chrX 12827925 12828131 -149771799 + LTR16C LTR ERVL 256 486 -5 676 156 8 0 chrX 12829080 12829202 -149770728 + L1MD3 LINE L1 7868 7990 -5 235 167 19 0 chrX 12830464 12830518 -149769412 - L1MA8 LINE L1 -3 6288 6234 30 59 0 0 chrX 12830852 12830903 -149769027 + AT_rich Low_complexity Low_complexity 1 51 0 1550 124 0 0 chrX 12830906 12831148 -149768782 - L1MA4 LINE L1 -16 6284 6043 495 304 99 5 chrX 12832541 12832732 -149767198 + MIR SINE MIR 46 254 -8 193 348 22 11 chrX 12833392 12833481 -149766449 + MIR SINE MIR 2 91 -171 697 200 133 0 chrX 12834386 12834542 -149765388 - MER5A DNA MER1_type -6 183 4 2423 153 13 13 chrX 12834568 12834953 -149764977 + L1M1 LINE L1 374 758 -6807 1011 135 26 0 chrX 12834949 12835105 -149764825 - L1M1 LINE L1 -7391 174 15 * 1310 244 134 6 chrX 12835106 12835697 -149764233 - L1MC3 LINE L1 -743 5403 5224 2514 116 14 3 chrX 12835814 12836185 -149763745 - THE1C LTR MaLR 0 375 1 23 0 0 0 chrX 12836340 12836363 -149763567 + AT_rich Low_complexity Low_complexity 1 23 0 279 290 271 0 chrX 12836926 12837033 -149762897 - L2 LINE L2 0 3272 3137 182 333 0 0 chrX 12887316 12887367 -149712563 + L2 LINE L2 3261 3311 -2 2432 191 26 51 chrX 12888601 12889129 -149710801 + MLT2B3 LTR ERVL 1 515 -39 14729 111 27 8 chrX 12889133 12891348 -149708582 - Tigger1 DNA MER2_type 0 2418 162 1027 93 0 0 chrX 12891347 12891487 -149708443 - Tigger1 DNA MER2_type -527 1891 1752 * 1069 129 13 0 chrX 12891484 12891639 -149708291 - Tigger1 DNA MER2_type -2260 158 2 318 82 82 0 chrX 12891639 12891687 -149708243 + MLT2B3 LTR ERVL 469 520 0 225 0 0 0 chrX 12892206 12892231 -149707699 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chrX 12892591 12892628 -149707302 + AT_rich Low_complexity Low_complexity 1 37 0 335 301 21 0 chrX 12893048 12893141 -149706789 - MIR SINE MIR -66 142 48 229 332 48 102 chrX 12893401 12893588 -149706342 - L2 LINE L2 -62 3210 3034 1397 346 118 12 chrX 12893672 12894648 -149705282 - L2 LINE L2 -417 2897 1819 312 246 0 0 chrX 12894637 12894706 -149705224 + MIR3 SINE MIR 139 207 -1 * 2264 110 0 0 chrX 12894798 12895099 -149704831 + AluSc SINE Alu 1 301 -8 616 248 147 0 chrX 12895578 12895735 -149704195 + MER5A DNA MER1_type 9 188 -1 21 57 0 0 chrX 12895833 12895868 -149704062 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chrX 12896013 12896043 -149703887 + AT_rich Low_complexity Low_complexity 1 30 0 264 130 0 0 chrX 12898556 12898602 -149701328 + (CAT)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chrX 12900518 12900547 -149699383 + AT_rich Low_complexity Low_complexity 1 29 0 389 236 211 25 chrX 12905611 12905772 -149694158 + MIR SINE MIR 1 191 -71 266 329 0 12 chrX 12907466 12907548 -149692382 - L2 LINE L2 -1 3271 3191 804 291 54 12 chrX 12907813 12908054 -149691876 - LTR33 LTR ERVL -270 251 1 256 232 20 0 chrX 12908376 12908475 -149691455 + GA-rich Low_complexity Low_complexity 2 102 0 222 326 12 12 chrX 12909381 12909467 -149690463 + MER5A DNA MER1_type 3 88 -101 182 313 61 40 chrX 12909416 12909515 -149690415 - MER5A DNA MER1_type -26 163 63 * 5884 130 18 17 chrX 12909524 12910427 -149689503 - MER49 LTR ERV1 -19 904 1 332 278 103 0 chrX 12910607 12910704 -149689226 + MIR SINE MIR 35 141 -67 189 0 0 0 chrX 12910704 12910725 -149689205 + (A)n Simple_repeat Simple_repeat 1 21 0 22 70 0 0 chrX 12911262 12911305 -149688625 + AT_rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chrX 12912244 12912288 -149687642 + AT_rich Low_complexity Low_complexity 1 44 0 2239 178 13 5 chrX 12912610 12913003 -149686927 - MSTD LTR MaLR 0 396 1 304 273 124 0 chrX 12914914 12915035 -149684895 - LTR16A1 LTR ERVL 0 457 322 399 340 200 14 chrX 12915064 12915429 -149684501 + L2 LINE L2 2836 3268 -4 691 336 177 26 chrX 12916690 12917898 -149682032 - L2 LINE L2 -406 2908 1519 810 221 80 19 chrX 12918450 12918663 -149681267 - MIR SINE MIR -15 247 22 313 355 111 32 chrX 12919820 12920037 -149679893 - MIR SINE MIR -25 237 4 1079 313 50 5 chrX 12921078 12921462 -149678468 + LTR16C LTR ERVL 61 461 -30 2045 162 44 10 chrX 12922064 12922472 -149677458 - LTR37A LTR ERV1 -4 422 1 681 289 19 29 chrX 12922736 12922944 -149676986 - MIR SINE MIR -56 206 1 364 263 84 21 chrX 12923320 12923415 -149676515 - L2 LINE L2 -3 3310 3210 231 191 0 0 chrX 12924393 12924435 -149675495 + L2 LINE L2 3270 3311 -2 2752 35 0 0 chrX 12924567 12924878 -149675052 - AluY SINE Alu 0 311 1 1162 175 5 31 chrX 12925105 12925328 -149674602 + MER20 DNA MER1_type 2 218 -1 364 186 41 21 chrX 12925933 12926030 -149673900 - MER94 DNA DNA 0 134 36 2286 103 0 0 chrX 12926289 12926580 -149673350 - AluSx SINE Alu -13 299 9 2179 80 53 10 chrX 12926883 12927182 -149672748 - AluSx SINE Alu 0 312 1 660 102 0 0 chrX 12927182 12927280 -149672650 - AluSp/q SINE Alu -6 307 210 1851 124 64 24 chrX 12927991 12928289 -149671641 + AluJb SINE Alu 1 310 -2 1122 202 20 0 chrX 12928841 12929044 -149670886 + MER58A DNA MER1_type 1 207 -17 241 294 11 11 chrX 12929514 12929606 -149670324 - MER103 DNA DNA -3 163 72 5952 222 93 44 chrX 12929661 12929977 -149669953 + L1MB4 LINE L1 74 373 -6271 2085 164 34 21 chrX 12929977 12930362 -149669568 - MLT1B LTR MaLR 0 390 1 5952 222 93 44 chrX 12930362 12930727 -149669203 + L1MB4 LINE L1 373 719 -5925 228 86 0 0 chrX 12930727 12930762 -149669168 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 5952 222 93 44 chrX 12930762 12933981 -149665949 + L1MB4 LINE L1 719 4211 -2433 1420 202 70 15 chrX 12933982 12934383 -149665547 - MER54B LTR ERVL 0 793 472 6225 197 31 35 chrX 12934633 12935874 -149664056 + L1MB4 LINE L1 4210 5454 -1224 2433 99 0 0 chrX 12935874 12936186 -149663744 + AluSx SINE Alu 1 312 0 6225 197 31 35 chrX 12936186 12936436 -149663494 + L1MB4 LINE L1 5454 5703 -975 2214 135 0 0 chrX 12936436 12936748 -149663182 + AluSx SINE Alu 1 312 0 6225 197 31 35 chrX 12936748 12937679 -149662251 + L1MB4 LINE L1 5703 6614 -64 23 0 0 0 chrX 12937683 12937706 -149662224 + AT_rich Low_complexity Low_complexity 1 23 0 267 244 64 0 chrX 12937776 12937854 -149662076 - MER103 DNA DNA -81 85 3 502 198 0 0 chrX 12937985 12938081 -149661849 - MER5A DNA MER1_type -85 104 9 303 340 0 9 chrX 12938474 12938580 -149661350 + GA-rich Low_complexity Low_complexity 3 107 0 353 258 34 11 chrX 12938999 12939088 -149660842 + MIR SINE MIR 66 156 -106 354 308 96 54 chrX 12939352 12939592 -149660338 + MIR SINE MIR 3 252 -10 2265 93 3 0 chrX 12942666 12942955 -149656975 - AluSx SINE Alu -14 298 9 1369 187 64 34 chrX 12942955 12943222 -149656708 - AluJo SINE Alu -35 277 3 925 229 21 0 chrX 12944519 12944711 -149655219 - MER58A DNA MER1_type -1 223 28 524 211 11 0 chrX 12944705 12944800 -149655130 - MER58A DNA MER1_type -9 98 3 * 1370 197 84 29 chrX 12944921 12945266 -149654664 - MLT1A1 LTR MaLR -1 364 1 2091 123 7 0 chrX 12946799 12947091 -149652839 - AluSx SINE Alu -16 296 3 183 42 0 0 chrX 12947372 12947396 -149652534 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 551 246 9 0 chrX 12947522 12947632 -149652298 + MER81 DNA DNA 1 111 -3 360 0 0 0 chrX 12949230 12949270 -149650660 + (CA)n Simple_repeat Simple_repeat 1 40 0 233 285 137 50 chrX 12949283 12949451 -149650479 + MIR3 SINE MIR 8 198 -10 3614 21 5 0 chrX 12949542 12949966 -149649964 - L1PA3 LINE L1 -11 6144 5719 427 271 147 49 chrX 12950042 12950205 -149649725 + MIR SINE MIR 3 195 -67 1174 219 18 0 chrX 12950205 12950424 -149649506 - MER58A DNA MER1_type -1 223 1 427 271 147 49 chrX 12950424 12950485 -149649445 + MIR SINE MIR 195 249 -13 3576 74 9 47 chrX 12950528 12950920 -149649010 + L1PA15 LINE L1 5390 5758 -407 2292 94 0 7 chrX 12950920 12951227 -149648703 + AluSg SINE Alu 1 305 -5 3576 74 9 47 chrX 12951227 12951362 -149648568 + L1PA15 LINE L1 5758 5897 -268 1717 134 0 4 chrX 12951421 12951682 -149648248 + L1PA15 LINE L1 5901 6160 -5 217 242 97 16 chrX 12953909 12953971 -149645959 - L3b LINE CR1 -90 1493 1427 230 250 14 56 chrX 12954430 12954502 -149645428 - MIR SINE MIR -118 90 22 6892 168 20 7 chrX 12954567 12955369 -149644561 - L1PA16 LINE L1 -314 5852 5062 1970 141 17 3 chrX 12955369 12955667 -149644263 - AluSx SINE Alu -10 302 1 6892 168 20 7 chrX 12955667 12956808 -149643122 - L1PA16 LINE L1 -1104 5062 3884 2087 90 0 47 chrX 12956841 12957141 -149642789 + AluSc SINE Alu 1 286 -23 342 281 11 0 chrX 12957146 12957235 -149642695 - L1MC4 LINE L1 -1339 6703 6614 2114 164 31 41 chrX 12958626 12959196 -149640734 - MLT2A2 LTR ERVL 0 554 1 265 287 79 50 chrX 12959490 12959591 -149640339 + MIR3 SINE MIR 105 208 0 1896 155 3 7 chrX 12959852 12960148 -149639782 + AluJb SINE Alu 1 295 -17 227 231 143 44 chrX 12961049 12961140 -149638790 + MIR SINE MIR 33 132 -76 180 0 0 0 chrX 12962404 12962424 -149637506 + (A)n Simple_repeat Simple_repeat 1 20 0 943 84 0 0 chrX 12964001 12964120 -149635810 + AluSg/x SINE Alu 174 292 -20 202 338 0 14 chrX 12964310 12964381 -149635549 + MER5A DNA MER1_type 119 188 -1 191 316 139 0 chrX 12964937 12965016 -149634914 - MIR SINE MIR -86 122 33 324 332 105 12 chrX 12965204 12965440 -149634490 + MIR SINE MIR 2 260 -2 201 282 39 13 chrX 12966272 12966350 -149633580 - L2 LINE L2 -86 3227 3148 587 235 50 6 chrX 12967091 12967270 -149632660 + L1ME3 LINE L1 5976 6162 0 29 60 0 0 chrX 12967958 12968008 -149631922 + AT_rich Low_complexity Low_complexity 1 50 0 1345 159 0 30 chrX 12968016 12968287 -149631643 - L1MA7 LINE L1 -10 6281 6019 252 209 15 15 chrX 12968455 12968522 -149631408 + T-rich Low_complexity Low_complexity 4 70 0 268 377 31 0 chrX 12969455 12969585 -149630345 - MIR3 SINE MIR -45 163 30 342 0 0 0 chrX 12969816 12969854 -149630076 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6199 87 0 0 chrX 12969894 12970880 -149629050 - L1PB1 LINE L1 0 6151 5164 1139 238 7 3 chrX 12970885 12971171 -149628759 + L1PB1 LINE L1 4873 5159 -987 450 0 0 0 chrX 12972007 12972057 -149627873 + (TG)n Simple_repeat Simple_repeat 2 51 0 210 267 13 40 chrX 12972602 12972677 -149627253 + MIR SINE MIR 120 192 -70 23 54 0 0 chrX 12976042 12976079 -149623851 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrX 12976364 12976385 -149623545 + AT_rich Low_complexity Low_complexity 1 21 0 349 259 46 0 chrX 12978797 12978905 -149621025 - L1ME4a LINE L1 -53 6068 5956 398 305 42 8 chrX 12979161 12979279 -149620651 + L2 LINE L2 3192 3313 0 555 101 0 0 chrX 12979323 12979402 -149620528 - MADE1 DNA Mariner 0 80 2 260 343 42 14 chrX 12979415 12979558 -149620372 + L3 LINE CR1 1318 1464 -113 6672 67 5 1 chrX 12979581 12980449 -149619481 + L1PA7 LINE L1 5282 6152 -2 322 329 37 25 chrX 12980507 12980668 -149619262 + MIR SINE MIR 100 262 0 191 370 0 0 chrX 12980681 12980754 -149619176 + L3 LINE CR1 1478 1550 -27 359 258 0 0 chrX 12980858 12980924 -149619006 - MER2 DNA MER2_type 0 345 280 1318 136 25 0 chrX 12980962 12981161 -149618769 - MER2 DNA MER2_type -134 211 8 340 328 8 8 chrX 12982591 12982713 -149617217 + L2 LINE L2 3192 3313 0 375 314 137 16 chrX 12982782 12982906 -149617024 - L2 LINE L2 0 3272 3134 233 263 12 25 chrX 12982975 12983055 -149616875 + GA-rich Low_complexity Low_complexity 1 79 0 194 327 59 0 chrX 12983056 12983157 -149616773 - L2 LINE L2 -219 3053 2947 674 235 40 88 chrX 12984869 12985322 -149614608 + MLT1H LTR MaLR 7 540 -9 2098 219 68 64 chrX 12986007 12986629 -149613301 - MLT1E3 LTR MaLR 0 624 1 1144 255 53 73 chrX 12986635 12987357 -149612573 + L2 LINE L2 2613 3311 -2 21 0 0 0 chrX 12987631 12987652 -149612278 + AT_rich Low_complexity Low_complexity 1 21 0 477 262 79 6 chrX 12988665 12988797 -149611133 + MER5B DNA MER1_type 5 130 -48 27840 53 6 2 chrX 12988829 12993185 -149606745 - L1PA5 LINE L1 0 6154 1779 374 183 0 0 chrX 12993185 12993245 -149606685 + MER5B DNA MER1_type 114 173 -5 1002 194 44 35 chrX 12993266 12993493 -149606437 - MIR SINE MIR -30 232 4 588 314 69 5 chrX 12993501 12993705 -149606225 - MIR SINE MIR -4 258 42 1223 278 12 30 chrX 12994186 12994592 -149605338 + L1ME3A LINE L1 5745 6143 -27 425 224 243 29 chrX 12994690 12994900 -149605030 - MIR SINE MIR 0 262 8 672 198 45 0 chrX 12995698 12995855 -149604075 + MER104 DNA Tc2 14 177 -3 621 350 110 21 chrX 12995873 12996588 -149603342 - L2 LINE L2 -41 3231 2456 2852 261 37 17 chrX 12997018 12998117 -149601813 - L1MEc LINE L1 -4105 2720 1451 1227 171 50 149 chrX 12998119 12998272 -149601658 - MLT1A1 LTR MaLR -2 363 196 369 57 38 0 chrX 12998272 12998325 -149601605 - L1PA6 LINE L1 0 6154 6100 1227 171 50 149 chrX 12998325 12998574 -149601356 - MLT1A1 LTR MaLR -169 196 1 1630 234 72 3 chrX 12998574 12999263 -149600667 - L1MEc LINE L1 -5231 1594 811 230 196 0 0 chrX 12999320 12999371 -149600559 + LTR66 LTR ERVL 389 439 -171 246 176 0 0 chrX 12999375 12999426 -149600504 + (TA)n Simple_repeat Simple_repeat 2 52 0 230 281 45 0 chrX 12999426 12999515 -149600415 - L1MC4 LINE L1 -1336 6706 6614 273 197 0 0 chrX 12999516 12999577 -149600353 + (TA)n Simple_repeat Simple_repeat 2 62 0 264 206 0 43 chrX 12999578 12999670 -149600260 + L1MC4 LINE L1 6615 6702 -1340 1276 256 9 16 chrX 12999698 13000018 -149599912 - L1MEc LINE L1 -6029 796 479 943 181 6 0 chrX 13000643 13000803 -149599127 - MER58B DNA MER1_type 0 341 181 1718 189 4 0 chrX 13000941 13001222 -149598708 + AluJo SINE Alu 1 282 -30 207 0 0 0 chrX 13001225 13001248 -149598682 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2097 139 16 49 chrX 13001324 13001668 -149598262 - THE1C LTR MaLR 0 375 44 2353 94 0 7 chrX 13001668 13001976 -149597954 - AluSx SINE Alu -6 306 1 2097 139 16 49 chrX 13001976 13002019 -149597911 - THE1C LTR MaLR -331 44 1 210 336 93 57 chrX 13002223 13002363 -149597567 + L2 LINE L2 3096 3240 -32 3033 135 170 116 chrX 13003695 13003918 -149596012 + L1MC3 LINE L1 6869 7078 -707 260 301 0 21 chrX 13003918 13004011 -149595919 + MLT1E3 LTR MaLR 35 125 -442 3033 135 170 116 chrX 13004011 13004564 -149595366 + L1MC3 LINE L1 7078 7784 -1 1310 216 44 19 chrX 13005224 13005544 -149594386 + MER46C DNA MER2_type 1 328 -10 22 35 0 0 chrX 13006541 13006570 -149593360 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 13006588 13006617 -149593313 + AT_rich Low_complexity Low_complexity 1 29 0 307 203 0 17 chrX 13006630 13006689 -149593241 + L2 LINE L2 3252 3309 -4 305 274 27 0 chrX 13007042 13007115 -149592815 + L2 LINE L2 3196 3270 -2 1971 226 164 34 chrX 13008215 13008942 -149590988 - L1ME3 LINE L1 -25 6137 5317 506 236 43 14 chrX 13009244 13009384 -149590546 + MIR SINE MIR 116 259 -3 1828 227 52 11 chrX 13010638 13011104 -149588826 + MLT1E3 LTR MaLR 139 595 0 591 322 52 26 chrX 13013777 13014010 -149585920 - MIR SINE MIR 0 262 24 703 259 42 47 chrX 13014060 13014296 -149585634 - MIR SINE MIR -16 246 12 192 357 14 0 chrX 13015149 13015219 -149584711 - MIR SINE MIR -111 97 27 204 313 50 38 chrX 13015746 13015826 -149584104 + MIR SINE MIR 132 212 -50 28 0 0 0 chrX 13015828 13015856 -149584074 + AT_rich Low_complexity Low_complexity 1 28 0 352 288 101 0 chrX 13015863 13016002 -149583928 - L2 LINE L2 -1 3312 3160 470 221 74 0 chrX 13016115 13016264 -149583666 + L1ME LINE L1 5001 5160 -986 1521 213 104 52 chrX 13016271 13016661 -149583269 + L1ME LINE L1 5186 5612 -554 2452 64 0 7 chrX 13016661 13016956 -149582974 + AluSc SINE Alu 1 293 -16 1521 213 104 52 chrX 13016956 13017151 -149582779 + L1ME LINE L1 5612 5795 -371 275 205 106 86 chrX 13017159 13017310 -149582620 + HAL1b LINE L1 681 834 -514 26 50 0 0 chrX 13019097 13019137 -149580793 + AT_rich Low_complexity Low_complexity 1 40 0 1958 188 9 3 chrX 13019137 13019483 -149580447 + MER7A DNA MER2_type 1 346 0 1614 208 13 37 chrX 13019541 13019921 -149580009 + MLT1A2 LTR MaLR 4 374 0 3938 144 22 0 chrX 13020120 13020743 -149579187 + Tigger1 DNA MER2_type 2 638 -1780 * 7214 97 15 80 chrX 13020740 13021570 -149578360 + Tigger1 DNA MER2_type 1255 1980 -438 1807 179 0 7 chrX 13021570 13021877 -149578053 + AluJo SINE Alu 1 305 -7 7214 97 15 80 chrX 13021877 13022290 -149577640 + Tigger1 DNA MER2_type 1980 2418 0 2388 107 30 30 chrX 13022451 13022815 -149577115 - THE1B LTR MaLR 0 364 1 594 247 169 0 chrX 13023692 13023846 -149576084 + MER5A DNA MER1_type 10 189 0 455 299 22 22 chrX 13023856 13023990 -149575940 - MER5B DNA MER1_type -2 176 43 187 337 11 22 chrX 13024259 13024351 -149575579 + MIR SINE MIR 59 149 -113 1003 284 28 71 chrX 13024377 13024842 -149575088 - L2 LINE L2 0 3313 2869 203 59 0 29 chrX 13025502 13025536 -149574394 + (ATG)n Simple_repeat Simple_repeat 3 35 0 390 310 184 6 chrX 13025657 13025831 -149574099 - MIR SINE MIR -43 219 15 1248 201 14 0 chrX 13026800 13027019 -149572911 + MER58A DNA MER1_type 1 222 -2 2003 253 129 24 chrX 13027678 13028668 -149571262 - L2 LINE L2 -5 3308 2236 286 323 97 0 chrX 13028699 13028792 -149571138 + L2 LINE L2 3179 3280 -33 297 0 0 0 chrX 13028825 13028858 -149571072 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2174 125 0 3 chrX 13029317 13029620 -149570310 + AluSx SINE Alu 1 302 -10 28 48 0 0 chrX 13029745 13029787 -149570143 + AT_rich Low_complexity Low_complexity 1 42 0 211 184 0 0 chrX 13029977 13030015 -149569915 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chrX 13030303 13030327 -149569603 + AT_rich Low_complexity Low_complexity 1 24 0 535 253 152 41 chrX 13030571 13031078 -149568852 - L1M4 LINE L1 -1701 4445 3883 292 287 125 42 chrX 13031087 13031244 -149568686 + L1M4 LINE L1 3519 3661 -2485 225 0 0 0 chrX 13031244 13031269 -149568661 + (CA)n Simple_repeat Simple_repeat 2 26 0 292 287 125 42 chrX 13031269 13031494 -149568436 + L1M4 LINE L1 3661 3933 -2213 528 320 133 18 chrX 13031507 13031844 -149568086 - L1M4 LINE L1 -2682 3464 3089 343 313 74 28 chrX 13031859 13032249 -149567681 - L1M4 LINE L1 -3139 3007 2600 207 246 49 0 chrX 13032428 13032489 -149567441 + L2 LINE L2 3250 3313 0 211 306 59 0 chrX 13033094 13033179 -149566751 + MIR3 SINE MIR 104 193 -15 190 306 16 16 chrX 13033402 13033464 -149566466 - L3 LINE CR1 -19 1558 1497 210 298 29 77 chrX 13033599 13033703 -149566227 + MIR SINE MIR 27 125 -83 723 240 14 37 chrX 13034376 13034593 -149565337 - MIR SINE MIR -1 261 50 927 244 5 24 chrX 13035043 13035256 -149564674 - MER58A DNA MER1_type -15 209 1 1919 209 65 83 chrX 13035565 13036169 -149563761 - MLT1E LTR MaLR 0 593 1 2111 130 72 17 chrX 13036220 13036565 -149563365 - THE1B LTR MaLR 0 364 1 11701 92 9 5 chrX 13036565 13038137 -149561793 - THE1B-int LTR MaLR 0 1580 1 2348 111 48 17 chrX 13038137 13038490 -149561440 - THE1B LTR MaLR 0 364 1 818 312 97 17 chrX 13039062 13039411 -149560519 - LTR16C LTR ERVL -25 466 90 199 100 33 0 chrX 13039572 13039602 -149560328 + L2 LINE L2 3265 3295 -18 376 356 96 5 chrX 13039751 13039939 -149559991 - MIR3 SINE MIR 0 208 4 382 290 61 23 chrX 13041758 13041889 -149558041 + MIR SINE MIR 20 155 -107 410 343 81 10 chrX 13042208 13042406 -149557524 - MIR SINE MIR -19 243 32 188 135 27 0 chrX 13042465 13042502 -149557428 + CT-rich Low_complexity Low_complexity 1 38 0 340 145 0 0 chrX 13043950 13044012 -149555918 - L1PB4 LINE L1 -2 6154 6093 192 326 53 38 chrX 13045014 13045146 -149554784 - L2 LINE L2 -7 3306 3173 960 241 14 18 chrX 13045351 13045571 -149554359 - MER20 DNA MER1_type 0 219 1 1087 202 28 0 chrX 13045631 13045844 -149554086 - MER20 DNA MER1_type 0 219 1 356 261 174 0 chrX 13046518 13046633 -149553297 - MLT1J2 LTR MaLR -52 398 264 252 0 0 0 chrX 13046828 13046856 -149553074 + (CCA)n Simple_repeat Simple_repeat 2 29 0 1039 234 28 0 chrX 13047690 13047908 -149552022 - MER58A DNA MER1_type 0 224 1 206 294 103 0 chrX 13048448 13048516 -149551414 + L3b LINE CR1 1104 1178 -405 592 52 0 0 chrX 13048795 13048872 -149551058 - L1PA5 LINE L1 -13 6141 6065 275 83 0 21 chrX 13049060 13049108 -149550822 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 250 195 24 0 chrX 13049109 13049191 -149550739 + (TCCA)n Simple_repeat Simple_repeat 2 85 0 2282 106 0 3 chrX 13049336 13049639 -149550291 + AluSx SINE Alu 1 302 -10 528 200 0 0 chrX 13049639 13049759 -149550171 + (TA)n Simple_repeat Simple_repeat 1 120 0 296 403 50 35 chrX 13049818 13050019 -149549911 - L2 LINE L2 -143 3129 2926 7411 39 10 0 chrX 13050279 13051536 -149548394 - L1PA5 LINE L1 -1 6153 4892 799 21 0 0 chrX 13051542 13051638 -149548292 + L1PA3 LINE L1 6060 6155 0 21 36 0 0 chrX 13051762 13051790 -149548140 + AT_rich Low_complexity Low_complexity 1 28 0 27994 57 5 1 chrX 13051790 13056667 -149543263 - L1PA5 LINE L1 -1240 4906 11 800 234 38 19 chrX 13056681 13056890 -149543040 - MIR SINE MIR -42 220 8 327 287 112 21 chrX 13056907 13057193 -149542737 + L1ME4a LINE L1 5590 5901 -220 584 259 141 12 chrX 13057239 13057409 -149542521 + MIR SINE MIR 37 228 -34 25 65 0 0 chrX 13057890 13057936 -149541994 + AT_rich Low_complexity Low_complexity 1 46 0 793 125 69 0 chrX 13058016 13058160 -149541770 - L1MA8 LINE L1 -5 6286 6133 231 161 0 0 chrX 13058379 13058435 -149541495 + CT-rich Low_complexity Low_complexity 1 56 0 876 152 62 0 chrX 13058756 13058934 -149540996 + MER53 DNA DNA 1 189 0 534 70 0 0 chrX 13058999 13059070 -149540860 + (TG)n Simple_repeat Simple_repeat 2 72 0 628 240 29 0 chrX 13059269 13059440 -149540490 + MER5B DNA MER1_type 3 178 0 260 312 39 58 chrX 13060245 13060399 -149539531 - MER5A DNA MER1_type -6 183 33 * 315 297 48 48 chrX 13060274 13060419 -149539511 + MER5A DNA MER1_type 44 188 -1 502 268 21 0 chrX 13060452 13060594 -149539336 + MER117 DNA MER1_type 1 145 -52 1701 263 71 20 chrX 13060626 13060693 -149539237 + L1MEc LINE L1 2086 2148 -4067 725 22 0 0 chrX 13060693 13060783 -149539147 + L1PA3 LINE L1 6066 6155 0 1701 263 71 20 chrX 13060783 13061836 -149538094 + L1MEc LINE L1 2148 3231 -2984 275 296 120 0 chrX 13061844 13061986 -149537944 - L2 LINE L2 -1403 1911 1753 289 286 71 0 chrX 13062054 13062138 -149537792 - L2 LINE L2 -4 3309 3220 * 367 303 210 14 chrX 13062106 13062396 -149537534 - L2 LINE L2 -431 2883 2537 448 286 8 16 chrX 13062399 13062525 -149537405 - L2 LINE L2 -1 3312 3188 * 1218 328 118 65 chrX 13062522 13064497 -149535433 - L2 LINE L2 -773 2541 461 537 210 0 0 chrX 13064834 13064934 -149534996 - MIR SINE MIR 0 262 163 207 0 0 0 chrX 13065414 13065437 -149534493 + (GCATG)n Simple_repeat Simple_repeat 1 23 0 244 228 18 0 chrX 13065753 13065810 -149534120 - MIR SINE MIR -102 160 103 501 201 98 18 chrX 13065867 13066031 -149533899 - MER96B DNA MER1_type? -238 179 3 27 0 0 0 chrX 13066085 13066112 -149533818 + AT_rich Low_complexity Low_complexity 1 27 0 2339 96 3 13 chrX 13066124 13066437 -149533493 + AluSx SINE Alu 1 310 -2 1999 147 45 3 chrX 13067171 13067546 -149532384 - L1MA6 LINE L1 0 6300 5910 1654 84 16 4 chrX 13067546 13067795 -149532135 + L1PA13 LINE L1 5833 6084 -79 367 324 55 103 chrX 13067883 13068895 -149531035 - L2 LINE L2 -1035 2279 1316 722 232 19 0 chrX 13069077 13069232 -149530698 - MER45A DNA AcHobo -20 158 1 283 354 16 16 chrX 13069748 13069875 -149530055 - L2 LINE L2 -238 3034 2908 1764 190 56 58 chrX 13070307 13070452 -149529478 - MLT1D LTR MaLR -7 498 354 3197 139 17 2 chrX 13070452 13070992 -149528938 - LTR55 LTR ERV 0 548 1 1764 190 56 58 chrX 13070992 13071345 -149528585 - MLT1D LTR MaLR -151 354 1 856 267 112 25 chrX 13071362 13071729 -149528201 + LTR16C LTR ERVL 90 488 -3 188 340 94 28 chrX 13072479 13072585 -149527345 - L2 LINE L2 -1 3312 3200 1115 177 9 44 chrX 13073020 13073246 -149526684 + MER20 DNA MER1_type 1 218 -1 891 195 12 0 chrX 13073725 13073894 -149526036 + MER5B DNA MER1_type 4 174 -4 508 223 10 0 chrX 13073895 13073998 -149525932 + MER5A DNA MER1_type 4 107 -82 580 301 76 17 chrX 13074932 13075168 -149524762 + MIR SINE MIR 3 252 -10 508 169 85 0 chrX 13075191 13075309 -149524621 - L1PA16 LINE L1 -49 6117 5990 293 206 0 149 chrX 13075332 13075473 -149524457 - MER112 DNA MER1_type -109 151 32 1590 142 18 36 chrX 13075544 13075997 -149523933 - L1MA9 LINE L1 0 6334 5902 2407 76 3 0 chrX 13076382 13076685 -149523245 + AluSp SINE Alu 1 304 -9 841 179 7 0 chrX 13076816 13076961 -149522969 + FRAM SINE Alu 1 146 -30 306 49 0 0 chrX 13077448 13077489 -149522441 - tRNA-Cys-TGC tRNA tRNA -34 41 1 669 320 58 50 chrX 13078586 13078964 -149520966 - L3 LINE CR1 -53 1524 1144 698 251 81 9 chrX 13079332 13079555 -149520375 - MIR SINE MIR -8 254 16 1323 133 18 18 chrX 13079897 13080115 -149519815 - MER20 DNA MER1_type 0 219 2 359 339 86 19 chrX 13080306 13080563 -149519367 - MLT2E LTR ERVL 0 628 355 368 268 35 42 chrX 13080585 13080727 -149519203 - MLT2E LTR ERVL -454 174 34 470 150 13 0 chrX 13081405 13081494 -149518436 + MER58 DNA MER1_type 120 2420 0 709 249 156 69 chrX 13081495 13081829 -149518101 - L2 LINE L2 -450 2864 2502 1016 217 9 0 chrX 13081945 13082162 -149517768 + MER20 DNA MER1_type 1 219 0 261 337 83 91 chrX 13083162 13083560 -149516370 - L2 LINE L2 -41 3231 2837 910 226 6 0 chrX 13083633 13083810 -149516120 - MER45A DNA AcHobo 0 178 1 412 305 40 33 chrX 13083986 13084137 -149515793 - MIR3 SINE MIR -53 155 4 182 356 82 41 chrX 13084327 13084473 -149515457 - L2 LINE L2 -13 3259 3108 182 322 68 0 chrX 13084799 13084858 -149515072 + L2 LINE L2 3183 3245 -27 2165 233 78 13 chrX 13086169 13086759 -149513171 - MLT1G LTR MaLR 0 590 1 5697 133 28 3 chrX 13086990 13088055 -149511875 + L1MA5 LINE L1 5203 6294 -6 1698 162 48 10 chrX 13088577 13088867 -149511063 + AluJb SINE Alu 1 301 -11 1357 92 100 0 chrX 13088949 13089178 -149510752 + L1MA7 LINE L1 6031 6282 -9 317 329 43 0 chrX 13089489 13089629 -149510301 - MLT1-int LTR MaLR -827 544 399 1157 225 142 87 chrX 13089813 13090364 -149509566 - MLT1G LTR MaLR -6 584 9 882 318 157 26 chrX 13090814 13091738 -149508192 + L2 LINE L2 2234 3273 -40 263 241 78 43 chrX 13091733 13091849 -149508081 + L2 LINE L2 3026 3145 -168 * 223 145 65 0 chrX 13091862 13091924 -149508006 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 623 196 87 7 chrX 13091924 13092062 -149507868 + L2 LINE L2 3162 3310 -3 2421 100 0 0 chrX 13092071 13092380 -149507550 + AluSq SINE Alu 1 309 -4 382 300 10 10 chrX 13092749 13092849 -149507081 + MIR SINE MIR 32 131 -131 216 297 0 14 chrX 13092950 13093024 -149506906 - MIR3 SINE MIR -49 159 87 188 283 19 0 chrX 13094322 13094375 -149505555 - L2 LINE L2 -1 3271 3218 389 256 154 26 chrX 13094850 13095006 -149504924 - MER5B DNA MER1_type 0 178 3 364 335 46 12 chrX 13095006 13095161 -149504769 - MIR3 SINE MIR -38 170 10 351 299 24 16 chrX 13095568 13095695 -149504235 + L2 LINE L2 3181 3308 -5 1624 130 8 16 chrX 13095877 13096124 -149503806 + AluJb SINE Alu 44 288 -24 22 35 0 0 chrX 13097320 13097349 -149502581 + AT_rich Low_complexity Low_complexity 1 29 0 193 167 0 0 chrX 13097496 13097532 -149502398 + L2 LINE L2 3222 3257 -15 234 0 0 0 chrX 13097534 13097560 -149502370 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 531 0 0 0 chrX 13098619 13098678 -149501252 + (CA)n Simple_repeat Simple_repeat 2 60 0 24 0 0 0 chrX 13099447 13099471 -149500459 + AT_rich Low_complexity Low_complexity 1 24 0 9187 77 15 0 chrX 13099616 13101641 -149498289 - L1PA7 LINE L1 -5 6149 4106 24 53 0 0 chrX 13101648 13101686 -149498244 + AT_rich Low_complexity Low_complexity 1 38 0 231 188 0 0 chrX 13102001 13102049 -149497881 + MER93b LTR ERV1 98 145 -228 10658 80 2 12 chrX 13102052 13104419 -149495511 - L1P3 LINE L1 -4098 2363 11 2134 109 17 7 chrX 13104602 13104895 -149495035 + AluSc SINE Alu 1 296 -13 325 291 270 7 chrX 13105256 13105404 -149494526 + MIR SINE MIR 61 247 -15 1208 288 72 40 chrX 13107971 13108245 -149491685 + L2 LINE L2 2676 2940 -373 1213 216 0 0 chrX 13108245 13108467 -149491463 - MER58A DNA MER1_type -2 222 1 1208 288 72 40 chrX 13108467 13108675 -149491255 + L2 LINE L2 2940 3199 -114 300 120 0 0 chrX 13108675 13108725 -149491205 + (CA)n Simple_repeat Simple_repeat 2 51 0 1208 288 72 40 chrX 13108725 13108842 -149491088 + L2 LINE L2 3199 3311 -2 1115 229 31 47 chrX 13109034 13109353 -149490577 - ERVL LTR ERVL -533 5231 4918 587 224 102 37 chrX 13109413 13109659 -149490271 - LTR37B LTR ERV1 -9 459 198 250 325 53 9 chrX 13109869 13109983 -149489947 - MIR3 SINE MIR -83 125 7 238 343 131 11 chrX 13110106 13110281 -149489649 + MIR SINE MIR 19 214 -48 238 188 141 16 chrX 13110710 13110774 -149489156 + MIR SINE MIR 85 156 -106 202 264 28 14 chrX 13110861 13110933 -149488997 - MIR SINE MIR -106 156 84 698 248 7 0 chrX 13111054 13111195 -149488735 - MIR SINE MIR -119 143 2 1536 199 79 24 chrX 13111418 13111799 -149488131 - MLT1C LTR MaLR -58 409 8 518 324 87 21 chrX 13111878 13112119 -149487811 + MIR SINE MIR 6 262 0 1923 138 66 39 chrX 13112894 13113257 -149486673 - MER93b LTR ERV1 0 373 1 2612 58 0 3 chrX 13113415 13113727 -149486203 - AluY SINE Alu 0 311 1 209 301 163 41 chrX 13114559 13114682 -149485248 + MIR SINE MIR 89 226 -36 1397 252 90 22 chrX 13115798 13116254 -149483676 + MLT1E LTR MaLR 107 593 0 488 259 102 7 chrX 13116458 13116605 -149483325 - MIR3 SINE MIR -14 194 34 28 29 0 0 chrX 13117296 13117331 -149482599 + AT_rich Low_complexity Low_complexity 1 35 0 248 269 27 101 chrX 13117502 13117651 -149482279 + MIR SINE MIR 99 236 -26 702 291 111 7 chrX 13117967 13118273 -149481657 - MLT1J2 LTR MaLR 0 450 113 257 315 45 36 chrX 13118622 13118733 -149481197 + MIR SINE MIR 20 131 -131 1796 216 60 21 chrX 13118819 13119332 -149480598 + L1ME3A LINE L1 5586 6118 -52 954 237 36 80 chrX 13120538 13120708 -149479222 - L1MC4 LINE L1 -6 8036 7860 441 0 0 0 chrX 13120708 13120757 -149479173 + (CA)n Simple_repeat Simple_repeat 2 50 0 954 237 36 80 chrX 13120757 13121109 -149478821 - L1MC4 LINE L1 -182 7860 7537 411 273 142 52 chrX 13121141 13121529 -149478401 - MLT1H LTR MaLR -8 541 119 582 277 73 5 chrX 13121667 13121887 -149478043 + L1M2c LINE L1 355 589 -6200 825 151 68 10 chrX 13121922 13122114 -149477816 + L1MA6 LINE L1 3285 3487 -2659 274 115 0 33 chrX 13122416 13122477 -149477453 - L1PA15 LINE L1 -1 6164 6106 7871 163 40 33 chrX 13122477 13124258 -149475672 + L1MA6 LINE L1 3548 5341 -805 1862 159 30 3 chrX 13124271 13124605 -149475325 + LTR3b LTR ERVK 158 500 0 264 105 0 0 chrX 13124605 13124643 -149475287 + LTR3b LTR ERVK 463 500 0 2248 159 21 0 chrX 13124643 13125063 -149474867 + L1MA6 LINE L1 5338 5766 -534 * 9550 85 68 1 chrX 13125061 13127619 -149472311 + L1PBa LINE L1 19 2878 -3985 1959 82 0 0 chrX 13127618 13127900 -149472030 + L1P LINE L1 1870 2151 -3995 * 2720 128 87 2 chrX 13127900 13128389 -149471541 + L1MA6 LINE L1 5760 6295 -5 2274 104 0 19 chrX 13128414 13128732 -149471198 + AluSx SINE Alu 1 312 0 230 175 95 0 chrX 13128732 13128790 -149471140 + L1MB5 LINE L1 6106 6165 -9 934 153 0 0 chrX 13128889 13129026 -149470904 - FLAM_C SINE Alu -2 141 5 1044 175 3 164 chrX 13129687 13130035 -149469895 - MLT1A1 LTR MaLR -2 363 72 876 154 0 0 chrX 13130044 13130174 -149469756 - FLAM_C SINE Alu -13 130 1 289 227 67 0 chrX 13130174 13130249 -149469681 - MLT1A1 LTR MaLR -280 85 6 361 360 68 13 chrX 13130521 13130757 -149469173 + L2 LINE L2 2611 2859 -455 1390 253 84 10 chrX 13130885 13131375 -149468555 + L1ME3A LINE L1 5613 6138 -32 1509 197 56 122 chrX 13131750 13132385 -149467545 - MLT1E LTR MaLR -5 588 1 1043 246 100 4 chrX 13132415 13132686 -149467244 + MLT1F LTR MaLR 1 298 -244 897 127 67 0 chrX 13132686 13132851 -149467079 + MER53 DNA DNA 2 177 -12 731 216 62 46 chrX 13132883 13133124 -149466806 + MLT1F LTR MaLR 296 540 -2 940 186 67 29 chrX 13133660 13133870 -149466060 + MER20B DNA MER1_type 2 219 0 210 218 73 0 chrX 13134028 13134083 -149465847 - L2 LINE L2 0 3313 3255 29 28 0 0 chrX 13184446 13184482 -149415448 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chrX 13184620 13184663 -149415267 + AT_rich Low_complexity Low_complexity 1 43 0 281 274 82 7 chrX 13184787 13184922 -149415008 + L1M4 LINE L1 4900 5044 -1102 2280 75 0 0 chrX 13185154 13185459 -149414471 - AluY SINE Alu 0 305 1 279 0 0 0 chrX 13185488 13185519 -149414411 + (T)n Simple_repeat Simple_repeat 1 31 0 249 83 0 0 chrX 13186005 13186041 -149413889 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 333 336 9 0 chrX 13186723 13186830 -149413100 + MIR3 SINE MIR 53 160 -48 1041 208 19 14 chrX 13188542 13188754 -149411176 + MER20B DNA MER1_type 1 213 -6 250 328 86 11 chrX 13188934 13189108 -149410822 - MIR SINE MIR -30 232 46 735 249 112 43 chrX 13189279 13189618 -149410312 + LTR16A1 LTR ERVL 121 457 0 1326 168 127 72 chrX 13189697 13190043 -149409887 + MLT1A1 LTR MaLR 1 365 0 1507 171 25 25 chrX 13190918 13191234 -149408696 - MER58B DNA MER1_type 0 341 26 308 267 59 22 chrX 13191244 13191379 -149408551 - LTR16C LTR ERVL 0 491 352 2041 151 0 13 chrX 13191478 13191790 -149408140 + AluSx SINE Alu 1 308 -4 287 335 135 32 chrX 13192776 13193057 -149406873 + MLT1K LTR MaLR 124 433 -155 458 274 63 46 chrX 13193098 13193273 -149406657 - MER5A DNA MER1_type -3 186 9 466 277 84 0 chrX 13194010 13194176 -149405754 - MER20B DNA MER1_type -155 628 449 2209 149 22 74 chrX 13194193 13194258 -149405672 - MLT1D LTR MaLR -2 503 436 2379 78 0 3 chrX 13194258 13194554 -149405376 + AluSq SINE Alu 1 295 -18 2209 149 22 74 chrX 13194554 13194849 -149405081 - MLT1D LTR MaLR -69 436 172 4960 87 3 1 chrX 13194849 13195519 -149404411 + L1PA10 LINE L1 5497 6167 -1 2209 149 22 74 chrX 13195519 13195646 -149404284 - MLT1D LTR MaLR -333 172 40 1376 242 50 18 chrX 13195660 13196102 -149403828 - HERV16 LTR ERVL -3789 1207 752 450 257 114 0 chrX 13196116 13196256 -149403674 - HERV16 LTR ERVL -4839 157 2 827 223 48 77 chrX 13196270 13196607 -149403323 - LTR16A LTR ERVL -67 383 57 1951 121 57 62 chrX 13197596 13198016 -149401914 + L1MA7 LINE L1 5873 6290 -1 21 36 0 0 chrX 13198038 13198066 -149401864 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chrX 13198163 13198205 -149401725 + AT_rich Low_complexity Low_complexity 1 42 0 252 0 0 0 chrX 13198207 13198235 -149401695 + (TA)n Simple_repeat Simple_repeat 2 29 0 838 198 284 4 chrX 13198599 13198946 -149400984 - LTR50 LTR ERVL -215 580 53 833 174 0 35 chrX 13198946 13199118 -149400812 - MER3 DNA MER1_type -2 207 42 381 266 38 55 chrX 13199309 13199497 -149400433 - MIR SINE MIR -9 253 72 784 150 16 8 chrX 13199650 13199777 -149400153 + AluJo SINE Alu 7 134 -178 237 295 223 36 chrX 13200120 13200259 -149399671 + MIR SINE MIR 69 233 -29 637 203 0 8 chrX 13200355 13200473 -149399457 - L2 LINE L2 -5 3308 3192 303 326 83 23 chrX 13200652 13200784 -149399146 + MIR3 SINE MIR 8 147 -61 1741 196 122 7 chrX 13201436 13201855 -149398075 + MLT1C LTR MaLR 1 467 0 1749 138 100 9 chrX 13203519 13203868 -149396062 + L1MB8 LINE L1 5798 6178 0 275 85 21 0 chrX 13204321 13204368 -149395562 + (TTTG)n Simple_repeat Simple_repeat 4 51 0 441 321 121 46 chrX 13204439 13204828 -149395102 - L2 LINE L2 -696 2618 2201 513 251 78 22 chrX 13204834 13205022 -149394908 - MIR SINE MIR -49 213 18 259 318 108 37 chrX 13205771 13205985 -149393945 - L2 LINE L2 -1690 1624 1396 225 205 0 0 chrX 13206363 13206402 -149393528 - MER5B DNA MER1_type -3 175 137 986 203 13 12 chrX 13206405 13206623 -149393307 - MLT1F1 LTR MaLR -5 537 343 375 107 0 0 chrX 13206626 13206682 -149393248 - MLT2B1 LTR ERVL 0 520 465 225 0 0 0 chrX 13206682 13206707 -149393223 + (CA)n Simple_repeat Simple_repeat 2 26 0 407 70 120 0 chrX 13206786 13206944 -149392986 + (TA)n Simple_repeat Simple_repeat 1 177 0 384 138 0 0 chrX 13206967 13207032 -149392898 + (CA)n Simple_repeat Simple_repeat 1 65 0 2024 196 65 20 chrX 13207032 13207491 -149392439 - MLT2B1 LTR ERVL -40 480 1 1495 205 15 46 chrX 13207492 13207715 -149392215 - MLT1F1 LTR MaLR -246 321 93 2106 127 10 0 chrX 13207715 13208006 -149391924 + AluSx SINE Alu 1 294 -18 204 40 0 0 chrX 13208006 13208031 -149391899 + (GA)n Simple_repeat Simple_repeat 2 26 0 1495 205 15 46 chrX 13208031 13208133 -149391797 - MLT1F1 LTR MaLR -472 95 5 417 189 226 0 chrX 13208133 13208239 -149391691 - MER5B DNA MER1_type -34 144 15 2445 71 0 43 chrX 13208451 13208776 -149391154 - AluY SINE Alu 0 311 1 605 130 9 19 chrX 13209046 13209154 -149390776 + MLT2C1 LTR ERVL 1 107 -290 3412 128 10 0 chrX 13209204 13209711 -149390219 + MER41E LTR ERV1 1 512 0 311 175 0 0 chrX 13209739 13209796 -149390134 + MLT2B1 LTR ERVL 464 520 0 4625 159 43 4 chrX 13209796 13210625 -149389305 + MLT1-int LTR MaLR 1 862 -509 1125 207 41 48 chrX 13210626 13210921 -149389009 + MLT1C LTR MaLR 175 467 0 609 194 53 114 chrX 13211761 13212024 -149387906 - MER112 DNA MER1_type -6 254 8 328 336 73 73 chrX 13212496 13213208 -149386722 - L2 LINE L2 -260 3012 2285 7336 30 0 0 chrX 13214088 13214962 -149384968 + L1PA4 LINE L1 5282 6155 0 272 192 90 26 chrX 13217801 13217879 -149382051 - MLT1I LTR MaLR -12 397 315 7404 153 28 5 chrX 13218052 13219495 -149380435 + L1PB4 LINE L1 3161 4637 -1509 41838 41 5 3 chrX 13219509 13225644 -149374286 + L1PA6 LINE L1 6 6151 -3 204 40 0 0 chrX 13225690 13225715 -149374215 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 4597 114 35 1 chrX 13225750 13226488 -149373442 + L1PB4 LINE L1 5393 6155 -1 25 31 0 0 chrX 13226510 13226542 -149373388 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chrX 13226627 13226670 -149373260 + AT_rich Low_complexity Low_complexity 1 43 0 983 160 110 25 chrX 13226847 13227047 -149372883 - MER20 DNA MER1_type -1 218 2 528 213 98 0 chrX 13227156 13227278 -149372652 + MIR SINE MIR 59 192 -70 544 298 50 25 chrX 13228078 13228276 -149371654 - MIR3 SINE MIR -2 206 4 25 0 0 0 chrX 13228282 13228307 -149371623 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chrX 13228685 13228706 -149371224 + AT_rich Low_complexity Low_complexity 1 21 0 1898 189 35 5 chrX 13228934 13229367 -149370563 - Charlie5 DNA MER1_type 0 2622 2177 369 223 39 23 chrX 13229364 13229494 -149370436 - MER3 DNA MER1_type -41 168 37 * 677 318 73 10 chrX 13230114 13230416 -149369514 + L2 LINE L2 2555 2875 -439 227 213 13 0 chrX 13230486 13230561 -149369369 + CT-rich Low_complexity Low_complexity 1 76 0 193 341 141 33 chrX 13230564 13230840 -149369090 + L2 LINE L2 2920 3225 -88 456 186 48 24 chrX 13231110 13231234 -149368696 + L1MD3 LINE L1 7868 7994 -1 24 0 0 0 chrX 13231762 13231786 -149368144 + AT_rich Low_complexity Low_complexity 1 24 0 646 195 172 0 chrX 13232614 13232788 -149367142 + MER76 LTR ERV 485 688 0 266 333 12 9 chrX 13232788 13232898 -149367032 - MIR SINE MIR -80 128 21 446 276 61 41 chrX 13233326 13233388 -149366542 - L1MEc LINE L1 -3945 2618 2559 2300 88 3 10 chrX 13233388 13233696 -149366234 - AluSc SINE Alu -3 306 1 446 276 61 41 chrX 13233696 13233995 -149365935 - L1MEc LINE L1 -4004 2559 2250 * 458 194 20 0 chrX 13233993 13234091 -149365839 - L1ME2 LINE L1 -10 6154 6055 226 91 0 0 chrX 13234091 13234124 -149365806 - MER3 DNA MER1_type -160 49 17 2474 164 43 11 chrX 13234191 13234635 -149365295 - LTR32 LTR ERVL 0 471 14 790 206 158 26 chrX 13234652 13234924 -149365006 - L1ME2 LINE L1 -243 5921 5614 636 321 94 22 chrX 13235212 13235847 -149364083 - L1MEc LINE L1 -4659 1725 1045 225 160 100 0 chrX 13236845 13236895 -149363035 - L1ME2 LINE L1 -2369 5439 5385 341 301 97 25 chrX 13236975 13237254 -149362676 - L1ME2 LINE L1 -864 5282 4984 358 283 66 30 chrX 13237493 13237691 -149362239 - L1ME2 LINE L1 -1441 4705 4501 228 389 0 0 chrX 13238112 13238202 -149361728 - MER5B DNA MER1_type -3 175 86 6000 109 12 20 chrX 13238218 13239025 -149360905 - Tigger1 DNA MER2_type -1 2417 1617 1621 177 30 7 chrX 13239025 13239324 -149360606 - AluJb SINE Alu -6 306 1 6000 109 12 20 chrX 13239324 13239473 -149360457 - Tigger1 DNA MER2_type -801 1617 1468 * 7190 143 48 7 chrX 13239471 13240745 -149359185 - Tigger1 DNA MER2_type -1069 1349 24 271 342 54 9 chrX 13241513 13241624 -149358306 - L2 LINE L2 -13 3259 3144 624 333 46 67 chrX 13241798 13242231 -149357699 - L2 LINE L2 -337 2977 2554 1917 162 105 16 chrX 13242398 13242825 -149357105 - MLT1C LTR MaLR 0 467 3 718 189 164 0 chrX 13243688 13243847 -149356083 + MER5A DNA MER1_type 4 188 -1 358 177 11 215 chrX 13243936 13243979 -149355951 + MER5B DNA MER1_type 1 51 -127 1499 130 0 139 chrX 13243979 13244324 -149355606 + AluJb SINE Alu 1 297 -5 358 177 11 215 chrX 13244324 13244466 -149355464 + MER5B DNA MER1_type 51 148 -30 252 77 0 0 chrX 13245118 13245157 -149354773 + (CAT)n Simple_repeat Simple_repeat 3 41 0 1077 188 16 0 chrX 13245779 13245965 -149353965 - MER5A DNA MER1_type 0 189 1 3895 171 17 0 chrX 13246020 13246727 -149353203 + L1MB2 LINE L1 5426 6144 -27 837 229 62 58 chrX 13248063 13248239 -149351691 + MIR SINE MIR 1 180 -82 718 253 40 5 chrX 13248239 13248441 -149351489 + MER3 DNA MER1_type 1 209 0 837 229 62 58 chrX 13248441 13248522 -149351408 + MIR SINE MIR 180 259 -3 1993 139 6 22 chrX 13249323 13249640 -149350290 + AluSx SINE Alu 1 312 0 2274 76 3 23 chrX 13250169 13250471 -149349459 - AluSx SINE Alu -16 296 1 368 285 43 55 chrX 13250681 13250916 -149349014 - MLT1L LTR MaLR -372 243 12 202 216 0 0 chrX 13251639 13251676 -149348254 + A-rich Low_complexity Low_complexity 5 41 0 1182 98 4 145 chrX 13253477 13253732 -149346198 - MER20 DNA MER1_type 0 219 1 22 70 0 0 chrX 13253848 13253891 -149346039 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chrX 13254541 13254565 -149345365 + AT_rich Low_complexity Low_complexity 1 24 0 363 276 0 10 chrX 13256633 13256731 -149343199 + L1MC4 LINE L1 6696 6792 -1250 2427 216 91 39 chrX 13256731 13257547 -149342383 + L1MC5 LINE L1 7067 7924 -37 633 254 97 33 chrX 13257637 13257967 -149341963 + L1MEd LINE L1 905 1255 -4864 979 266 147 17 chrX 13257968 13258445 -149341485 + L1MEd LINE L1 3011 3425 -2704 7761 27 0 2 chrX 13258445 13259344 -149340586 + MER11D LTR ERVK 1 897 0 979 266 147 17 chrX 13259344 13259637 -149340293 + L1MEd LINE L1 3425 3881 -2248 1652 152 18 30 chrX 13260158 13260382 -149339548 + MER33 DNA MER1_type 1 221 -2364 2095 128 0 0 chrX 13260382 13260672 -149339258 + AluSx SINE Alu 1 290 -22 1652 152 18 30 chrX 13260672 13260775 -149339155 + MER33 DNA MER1_type 221 324 0 1229 207 0 33 chrX 13261522 13261792 -149338138 - MIR SINE MIR 0 262 2 228 289 124 0 chrX 13261900 13262021 -149337909 + MIR SINE MIR 121 256 -6 2339 77 0 7 chrX 13262486 13262785 -149337145 - AluSc SINE Alu -12 297 1 29 0 0 0 chrX 13263969 13263998 -149335932 + AT_rich Low_complexity Low_complexity 1 29 0 737 257 71 99 chrX 13265004 13265508 -149334422 - L1ME3A LINE L1 -25 6145 5661 269 292 0 22 chrX 13265589 13265678 -149334252 + MIR3 SINE MIR 96 182 -26 394 273 126 35 chrX 13265777 13265975 -149333955 - L1MEd LINE L1 -5009 1110 895 373 323 50 6 chrX 13265988 13266149 -149333781 - L1MEd LINE L1 -5382 737 570 354 332 96 26 chrX 13266388 13266701 -149333229 - L1MC4a LINE L1 -1954 5854 5520 319 143 18 0 chrX 13266946 13267002 -149332928 + MER58 DNA MER1_type 2361 2417 -3 562 288 74 49 chrX 13267100 13267531 -149332399 + L1MC4 LINE L1 7584 8025 -17 216 0 0 0 chrX 13268275 13268299 -149331631 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2258 87 0 16 chrX 13268428 13268737 -149331193 + AluSx SINE Alu 1 304 -8 498 206 0 20 chrX 13268872 13268974 -149330956 - FRAM SINE Alu -11 165 66 246 229 83 0 chrX 13268989 13269069 -149330861 - MIR SINE MIR -7 201 106 884 158 179 46 chrX 13270832 13271117 -149328813 - MER33 DNA MER1_type -1 323 1 1890 163 0 3 chrX 13271207 13271502 -149328428 - AluJo SINE Alu -18 294 1 988 110 7 7 chrX 13272171 13272316 -149327614 - AluSc SINE Alu -19 290 146 579 192 0 0 chrX 13272316 13272415 -149327515 - AluS SINE Alu -213 99 1 473 286 112 10 chrX 13272983 13273179 -149326751 - MIR SINE MIR 0 262 47 2344 109 0 0 chrX 13274171 13274483 -149325447 + AluSx SINE Alu 1 312 0 327 298 98 75 chrX 13276630 13276885 -149323045 - MIR SINE MIR 0 262 2 6690 140 34 26 chrX 13277036 13279206 -149320724 + L1MA6 LINE L1 4121 6294 -6 243 289 78 102 chrX 13279795 13279961 -149319969 + L2 LINE L2 2565 2726 -588 212 125 50 0 chrX 13280752 13280792 -149319138 + (CGGGG)n Simple_repeat Simple_repeat 1 42 0 253 385 49 35 chrX 13281416 13281704 -149318226 - L2 LINE L2 -427 2887 2596 319 302 209 5 chrX 13281708 13281923 -149318007 + L1ME LINE L1 5571 5829 -333 246 224 0 0 chrX 13281924 13281973 -149317957 + (TATG)n Simple_repeat Simple_repeat 3 51 0 909 194 47 0 chrX 13282168 13282359 -149317571 - MIR SINE MIR -33 229 30 982 153 35 50 chrX 13282757 13282959 -149316971 - MER20 DNA MER1_type -5 214 16 547 289 26 19 chrX 13285408 13285564 -149314366 - MIR3 SINE MIR -35 173 17 489 246 24 72 chrX 13285578 13285745 -149314185 + L2 LINE L2 2709 2867 -447 419 228 123 24 chrX 13285752 13285963 -149313967 + MER112 DNA MER1_type 19 250 -10 585 282 184 58 chrX 13285968 13286344 -149313586 + L2 LINE L2 2874 3296 -17 246 380 64 41 chrX 13287205 13287471 -149312459 - L2 LINE L2 -195 3077 2806 2306 81 7 0 chrX 13287662 13287959 -149311971 - AluSp SINE Alu -14 299 1 1317 66 18 0 chrX 13288044 13288210 -149311720 + AluY SINE Alu 127 295 -16 445 314 52 12 chrX 13288358 13288616 -149311314 - L1MC/D LINE L1 -440 5681 5472 316 68 0 0 chrX 13288827 13288871 -149311059 - MADE1 DNA Mariner -1 79 36 738 43 0 0 chrX 13288917 13289009 -149310921 - L1PA5 LINE L1 0 6154 6063 587 248 209 12 chrX 13289258 13289512 -149310418 - L1ME3A LINE L1 -218 6021 5718 977 235 42 0 chrX 13289512 13289729 -149310201 + Charlie1 DNA MER1_type 1 226 -2535 711 148 0 30 chrX 13289736 13289871 -149310059 + Charlie1 DNA MER1_type 2631 2761 0 559 283 62 55 chrX 13289871 13290179 -149309751 - L1ME3A LINE L1 -506 5725 5416 * 1044 253 149 81 chrX 13290157 13291202 -149308728 - L1ME3A LINE L1 -1438 4777 3662 329 302 89 45 chrX 13291283 13291462 -149308468 - L1ME3A LINE L1 -4583 1813 1627 2132 65 59 0 chrX 13292016 13292306 -149307624 + L1PA5 LINE L1 5761 6067 -87 2492 128 50 50 chrX 13292320 13292836 -149307094 + L1MA8 LINE L1 5769 6284 -7 210 71 0 0 chrX 13293012 13293040 -149306890 + (T)n Simple_repeat Simple_repeat 1 28 0 2293 79 0 0 chrX 13293134 13293424 -149306506 + AluSg1 SINE Alu 2 291 -18 462 302 103 16 chrX 13293923 13294376 -149305554 + L1MEd LINE L1 1283 1889 -854 553 290 75 61 chrX 13294743 13295588 -149304342 + L1MEd LINE L1 2293 3132 -3250 261 156 0 0 chrX 13295617 13295662 -149304268 + L1MEd LINE L1 3111 3155 -3227 298 312 64 17 chrX 13295679 13295852 -149304078 + L1M4 LINE L1 4000 4180 -1966 229 295 179 0 chrX 13296180 13296292 -149303638 - L2 LINE L2 -2 3311 3180 402 215 201 21 chrX 13296672 13296717 -149303213 + MER58C DNA MER1_type 46 82 -2338 327 104 0 0 chrX 13296717 13296765 -149303165 + (CA)n Simple_repeat Simple_repeat 2 49 0 234 0 0 0 chrX 13296765 13296791 -149303139 + (GA)n Simple_repeat Simple_repeat 1 26 0 402 215 201 21 chrX 13296791 13296888 -149303042 + MER58C DNA MER1_type 81 215 0 822 229 56 0 chrX 13296896 13297075 -149302855 + MER5A DNA MER1_type 1 189 0 37 0 0 0 chrX 13297911 13297948 -149301982 + AT_rich Low_complexity Low_complexity 1 37 0 462 36 0 0 chrX 13298414 13298470 -149301460 + (CA)n Simple_repeat Simple_repeat 2 57 0 2309 104 30 33 chrX 13298493 13298858 -149301072 + THE1B LTR MaLR 1 364 0 404 56 0 0 chrX 13298862 13298916 -149301014 + MLT2A2 LTR ERVL 400 453 0 261 119 0 0 chrX 13298983 13299025 -149300905 + (TG)n Simple_repeat Simple_repeat 2 43 0 283 159 0 0 chrX 13299083 13299127 -149300803 - MSTB2 LTR MaLR 0 457 414 1012 164 195 95 chrX 13299133 13299492 -149300438 - MSTD LTR MaLR -1 395 1 288 284 31 19 chrX 13299665 13299827 -149300103 + CT-rich Low_complexity Low_complexity 1 164 0 203 306 0 0 chrX 13300138 13300187 -149299743 - MIR SINE MIR -4 258 210 1792 195 163 14 chrX 13300192 13300622 -149299308 + Charlie1a DNA MER1_type 5 498 -957 197 337 0 22 chrX 13300651 13300740 -149299190 - MIR3 SINE MIR -8 200 114 217 277 128 21 chrX 13300856 13300950 -149298980 - MIR SINE MIR -51 211 108 234 62 0 0 chrX 13301113 13301145 -149298785 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 187 350 70 0 chrX 13301406 13301506 -149298424 - L2 LINE L2 -199 3073 2967 2239 96 7 0 chrX 13301736 13302087 -149297843 - AluSx SINE Alu 0 353 1 2261 145 48 24 chrX 13302359 13302780 -149297150 - MSTB1 LTR MaLR -1 431 1 308 61 20 0 chrX 13303591 13303640 -149296290 - L1MA3 LINE L1 -1 6304 6255 296 287 240 7 chrX 13303713 13303863 -149296067 + L3b LINE CR1 1233 1417 -166 1689 142 12 82 chrX 13304344 13304537 -149295393 - AluJo SINE Alu -4 308 146 2336 90 3 0 chrX 13304537 13304836 -149295094 - AluY SINE Alu -11 300 1 1689 142 12 82 chrX 13304836 13304973 -149294957 - AluJo SINE Alu -166 146 1 464 163 0 0 chrX 13305048 13305128 -149294802 + MADE1 DNA Mariner 1 80 0 182 330 49 44 chrX 13306767 13306970 -149292960 + L2 LINE L2 2772 2975 -339 594 276 40 47 chrX 13308220 13308517 -149291413 + L1ME4a LINE L1 5558 5852 -269 384 22 0 0 chrX 13309735 13309782 -149290148 + (CA)n Simple_repeat Simple_repeat 1 92 0 384 22 0 0 chrX 13309782 13309827 -149290103 + (CA)n Simple_repeat Simple_repeat 2 46 0 313 329 48 14 chrX 13310360 13310506 -149289424 + MARNA DNA Mariner 48 198 -388 228 135 0 0 chrX 13312187 13312224 -149287706 + (TA)n Simple_repeat Simple_repeat 1 37 0 830 160 8 0 chrX 13313448 13313579 -149286351 + FLAM_A SINE Alu 1 132 -1 2998 218 74 3 chrX 13313917 13314670 -149285260 + L1MB7 LINE L1 3167 3973 -2173 1373 225 131 82 chrX 13314761 13315282 -149284648 - MER77 LTR ERV1 -6 599 54 504 184 6 120 chrX 13315298 13315456 -149284474 + L1MB7 LINE L1 3973 4112 -2034 * 4587 179 39 19 chrX 13315454 13315567 -149284363 + L1MB7 LINE L1 4426 4535 -1649 1129 171 102 102 chrX 13315567 13315713 -149284217 + MER2 DNA MER2_type 1 146 -198 1798 171 13 3 chrX 13315713 13316012 -149283918 - AluSx SINE Alu -10 302 1 1129 171 102 102 chrX 13316012 13316209 -149283721 + MER2 DNA MER2_type 145 344 0 4587 179 39 19 chrX 13316209 13316963 -149282967 + L1MB7 LINE L1 4535 5272 -912 2197 113 3 0 chrX 13316963 13317254 -149282676 + AluSq SINE Alu 1 292 -21 4587 179 39 19 chrX 13317254 13318095 -149281835 + L1MB7 LINE L1 5272 6173 -11 454 86 0 0 chrX 13318440 13318498 -149281432 + Alu SINE Alu 230 287 -22 25 51 0 0 chrX 13319351 13319390 -149280540 + AT_rich Low_complexity Low_complexity 1 39 0 348 301 110 8 chrX 13319541 13319777 -149280153 - L1MC4a LINE L1 -1833 5975 5716 41 82 0 0 chrX 13320159 13320256 -149279674 + AT_rich Low_complexity Low_complexity 1 97 0 27 87 0 0 chrX 13320341 13320410 -149279520 + AT_rich Low_complexity Low_complexity 1 69 0 1089 268 91 30 chrX 13320481 13321093 -149278837 - L1MC4a LINE L1 -174 5992 5351 264 30 0 0 chrX 13321152 13321185 -149278745 + (CA)n Simple_repeat Simple_repeat 2 34 0 296 296 19 0 chrX 13321191 13321299 -149278631 - L1P LINE L1 -1131 5015 4906 368 290 23 46 chrX 13321659 13321790 -149278140 + MIR3 SINE MIR 37 164 -44 1785 177 3 0 chrX 13321826 13322120 -149277810 + AluJo SINE Alu 1 295 -17 26 30 0 0 chrX 13322808 13322841 -149277089 + AT_rich Low_complexity Low_complexity 1 33 0 302 286 115 24 chrX 13323043 13323330 -149276600 - L1M4 LINE L1 -3724 2422 2110 1092 23 0 0 chrX 13325654 13325809 -149274121 + L1PA4 LINE L1 6024 6178 0 296 272 43 22 chrX 13326104 13326196 -149273734 + MIR3 SINE MIR 97 190 -18 290 290 31 45 chrX 13326814 13327004 -149272926 + L1MC/D LINE L1 5683 5868 -307 186 191 0 0 chrX 13327073 13327115 -149272815 + (TA)n Simple_repeat Simple_repeat 2 43 0 989 190 10 0 chrX 13327224 13327419 -149272511 + MER20 DNA MER1_type 23 219 0 789 257 136 1 chrX 13327423 13327781 -149272149 - L2 LINE L2 -250 3063 2654 371 296 61 0 chrX 13327810 13327925 -149272005 - MIR SINE MIR -26 236 115 855 157 7 7 chrX 13327958 13328098 -149271832 + AluJo SINE Alu 1 140 -172 1762 151 56 0 chrX 13329160 13329445 -149270485 + AluJb SINE Alu 1 301 -11 25 31 0 0 chrX 13330275 13330307 -149269623 + AT_rich Low_complexity Low_complexity 1 32 0 279 270 157 0 chrX 13333591 13333706 -149266224 + MIR SINE MIR 76 208 -54 266 223 86 101 chrX 13333850 13333989 -149265941 - L3 LINE CR1 -197 1380 1244 269 246 63 70 chrX 13334234 13334354 -149265576 - MIR SINE MIR -67 141 31 2008 126 155 11 chrX 13334536 13334910 -149265020 - MSTA LTR MaLR 0 428 1 1841 213 90 62 chrX 13335116 13335684 -149264246 - MLT1E1 LTR MaLR 0 654 71 21 0 0 0 chrX 13336218 13336239 -149263691 + AT_rich Low_complexity Low_complexity 1 21 0 2325 77 10 0 chrX 13337123 13337420 -149262510 + AluSp SINE Alu 1 300 -13 478 311 179 39 chrX 13337761 13338307 -149261623 + L2 LINE L2 1754 2376 -938 356 304 101 49 chrX 13338584 13338890 -149261040 + L2 LINE L2 2550 2871 -443 432 259 102 0 chrX 13339716 13339863 -149260067 + MER103 DNA DNA 3 164 -2 448 214 29 10 chrX 13341374 13341477 -149258453 - MER5A DNA MER1_type -76 113 9 298 253 182 26 chrX 13341452 13341606 -149258324 + MER5A DNA MER1_type 11 188 -1 * 1875 145 17 14 chrX 13341640 13341937 -149257993 - AluJb SINE Alu -9 303 6 222 358 84 0 chrX 13342119 13342214 -149257716 - L2 LINE L2 -15 3257 3155 1780 177 0 10 chrX 13343228 13343528 -149256402 + AluJb SINE Alu 1 297 -15 189 0 0 0 chrX 13343528 13343549 -149256381 + (GA)n Simple_repeat Simple_repeat 2 22 0 2474 93 0 0 chrX 13343607 13343919 -149256011 - AluSq SINE Alu -1 312 1 2197 102 0 16 chrX 13344653 13344957 -149254973 + AluSx SINE Alu 1 299 -13 593 172 16 0 chrX 13345003 13345125 -149254805 - L1MB7 LINE L1 -11 6173 6050 1122 242 5 0 chrX 13346413 13346636 -149253294 - MER58A DNA MER1_type 0 224 1 291 364 25 0 chrX 13346638 13346759 -149253171 + L2 LINE L2 2606 2729 -585 296 333 11 85 chrX 13346776 13346953 -149252977 + MLT1J LTR MaLR 25 188 -323 725 156 109 0 chrX 13346991 13347119 -149252811 + FLAM_C SINE Alu 2 143 0 1717 122 4 0 chrX 13347195 13347433 -149252497 - AluSx SINE Alu -71 241 3 298 308 70 44 chrX 13347433 13347660 -149252270 + L2 LINE L2 2817 3049 -223 220 286 0 60 chrX 13347699 13347783 -149252147 + L2 LINE L2 3235 3313 0 466 246 172 12 chrX 13348103 13348359 -149251571 + MER5C DNA MER1_type 28 324 0 1235 146 9 18 chrX 13348396 13348615 -149251315 + MER20 DNA MER1_type 3 219 0 350 226 0 10 chrX 13348691 13348793 -149251137 + CT-rich Low_complexity Low_complexity 1 101 0 604 212 87 103 chrX 13349521 13349552 -149250378 + MER5A DNA MER1_type 9 39 -150 2341 83 7 3 chrX 13349552 13349852 -149250078 + AluSx SINE Alu 1 301 -11 604 212 87 103 chrX 13349852 13350004 -149249926 + MER5A DNA MER1_type 39 189 0 236 217 0 22 chrX 13350015 13350061 -149249869 + MER5B DNA MER1_type 4 48 -130 1824 166 13 3 chrX 13350076 13350378 -149249552 - AluJo SINE Alu -7 305 1 588 185 115 0 chrX 13350378 13350508 -149249422 + MER5B DNA MER1_type 34 178 0 493 164 62 75 chrX 13350530 13350676 -149249254 - MER20 DNA MER1_type -53 166 23 302 255 186 35 chrX 13350787 13350932 -149248998 + MER5A DNA MER1_type 23 189 0 3155 163 0 2 chrX 13351871 13352400 -149247530 - LTR26B LTR ERV1 -2 529 2 1015 152 65 78 chrX 13352631 13352848 -149247082 + MER20 DNA MER1_type 1 214 -5 1297 186 34 31 chrX 13353384 13353676 -149246254 + MER33 DNA MER1_type 1 297 -2288 1893 146 0 17 chrX 13353676 13353986 -149245944 - AluJb SINE Alu 0 305 1 1297 186 34 31 chrX 13353986 13354015 -149245915 + MER33 DNA MER1_type 297 324 0 259 188 174 14 chrX 13354112 13354181 -149245749 - MER5B DNA MER1_type -3 175 96 1344 212 30 10 chrX 13354184 13354664 -149245266 + L1MC/D LINE L1 4942 5434 -743 529 185 28 19 chrX 13354739 13354847 -149245083 - MER5B DNA MER1_type -68 110 2 636 239 23 28 chrX 13355140 13355316 -149244614 - MER5B DNA MER1_type -3 175 1 733 212 41 6 chrX 13355324 13355494 -149244436 - MER5B DNA MER1_type 0 178 3 21 0 0 0 chrX 13355646 13355667 -149244263 + AT_rich Low_complexity Low_complexity 1 21 0 2195 115 0 0 chrX 13355667 13355954 -149243976 - AluSq SINE Alu -26 287 1 1772 182 16 7 chrX 13355958 13356265 -149243665 - AluJb SINE Alu 0 312 3 367 143 0 0 chrX 13356412 13356468 -149243462 + MER39 LTR ERV1 1 56 -651 697 103 21 0 chrX 13356483 13356580 -149243350 - BC200 scRNA scRNA -79 121 23 862 174 146 0 chrX 13356597 13356810 -149243120 + LTR48 LTR ERV1 39 282 -505 781 170 109 100 chrX 13356837 13357148 -149242782 + LTR48B LTR ERV1 368 644 0 788 241 23 0 chrX 13357155 13357329 -149242601 - MER5B DNA MER1_type 0 178 1 228 122 0 0 chrX 13358392 13358433 -149241497 + (TA)n Simple_repeat Simple_repeat 1 41 0 2258 102 7 0 chrX 13358665 13358959 -149240971 + AluSx SINE Alu 1 296 -16 803 195 107 0 chrX 13358967 13359136 -149240794 - MER5A DNA MER1_type -1 188 2 47 0 0 0 chrX 13359217 13359264 -149240666 + AT_rich Low_complexity Low_complexity 1 47 0 200 324 103 60 chrX 13359644 13359829 -149240101 + L3b LINE CR1 1372 1564 -19 898 221 75 4 chrX 13359848 13360074 -149239856 + LTR37A LTR ERV1 1 242 -184 466 170 20 20 chrX 13360080 13360180 -149239750 - MER21B LTR ERV1 -150 713 614 2359 84 0 10 chrX 13360333 13360641 -149239289 - AluY SINE Alu -6 305 1 797 213 181 53 chrX 13360726 13361195 -149238735 + MER34C LTR ERV1 57 585 0 348 274 83 25 chrX 13361204 13361361 -149238569 - MIR3 SINE MIR -25 183 18 276 359 62 39 chrX 13361491 13361619 -149238311 + L2 LINE L2 3142 3272 0 460 262 48 28 chrX 13361671 13361816 -149238114 - MIR SINE MIR -55 207 60 504 204 338 7 chrX 13361844 13361986 -149237944 - MER5A DNA MER1_type 0 189 1 1230 108 0 0 chrX 13362382 13362549 -149237381 - AluSg/x SINE Alu -9 303 137 919 195 6 0 chrX 13362866 13363040 -149236890 + MER5B DNA MER1_type 1 175 -3 1510 160 27 87 chrX 13363048 13363380 -149236550 + AluJo SINE Alu 1 312 0 378 171 24 61 chrX 13363445 13363527 -149236403 - MER5A DNA MER1_type -77 112 34 187 232 20 131 chrX 13363451 13363550 -149236380 + MER5A DNA MER1_type 96 183 -6 * 1026 188 183 68 chrX 13363977 13364192 -149235738 - MSTC LTR MaLR 0 428 239 1840 178 0 7 chrX 13364192 13364490 -149235440 - AluJb SINE Alu -15 297 2 1026 188 183 68 chrX 13364490 13364657 -149235273 - MSTC LTR MaLR -189 239 2 677 197 211 22 chrX 13364738 13364961 -149234969 + MLT1J1 LTR MaLR 15 279 -167 1985 140 49 20 chrX 13364983 13365332 -149234598 - THE1B LTR MaLR -5 359 1 11960 92 4 0 chrX 13365336 13366906 -149233024 - THE1B-int LTR MaLR -4 1576 1 2286 99 51 23 chrX 13366906 13367258 -149232672 - THE1B LTR MaLR 0 364 3 299 167 49 49 chrX 13367288 13367390 -149232540 + MLT1J1 LTR MaLR 343 444 -2 696 277 80 8 chrX 13367793 13368031 -149231899 - MIR SINE MIR -6 256 2 1852 134 54 13 chrX 13368359 13368657 -149231273 - AluJb SINE Alu -2 310 1 367 178 0 0 chrX 13368942 13369015 -149230915 - MER20 DNA MER1_type 0 219 147 955 149 19 0 chrX 13369015 13369176 -149230754 + MLT1C LTR MaLR 1 164 -303 320 250 9 27 chrX 13369178 13369290 -149230640 - L1ME2 LINE L1 -229 5935 5826 1510 214 67 0 chrX 13369942 13370283 -149229647 - MLT1A1 LTR MaLR -1 364 1 2368 69 30 7 chrX 13370760 13371063 -149228867 - AluSp SINE Alu -3 310 1 40 0 0 0 chrX 13371063 13371103 -149228827 + AT_rich Low_complexity Low_complexity 1 40 0 258 91 0 0 chrX 13371118 13371162 -149228768 - L1MA3 LINE L1 0 6305 6262 1749 186 6 10 chrX 13371180 13371491 -149228439 - AluJo SINE Alu -2 310 1 734 313 117 39 chrX 13371989 13372555 -149227375 + L2 LINE L2 2702 3313 0 301 273 0 61 chrX 13372568 13372667 -149227263 - L1MC4 LINE L1 -1336 6706 6614 2263 107 0 3 chrX 13372813 13373113 -149226817 - AluSp SINE Alu -14 299 1 1797 148 3 64 chrX 13373151 13373481 -149226449 - AluSx SINE Alu -2 310 1 1090 263 157 16 chrX 13373964 13374542 -149225388 - Charlie7 DNA MER1_type -1893 719 60 687 219 46 0 chrX 13374591 13374729 -149225201 - MER58A DNA MER1_type 0 224 80 2332 198 122 72 chrX 13374729 13375502 -149224428 + MER21B LTR ERV1 1 811 -52 254 277 36 12 chrX 13375530 13375613 -149224317 - MER58A DNA MER1_type -21 86 2 387 190 0 0 chrX 13375841 13375920 -149224010 + MER116 DNA Mariner 1 79 -1 473 343 43 39 chrX 13375948 13376181 -149223749 - MIR SINE MIR -14 248 15 749 118 0 74 chrX 13376210 13376345 -149223585 - FLAM_C SINE Alu -18 125 1 458 206 118 15 chrX 13376516 13376652 -149223278 + LTR55 LTR ERV 16 165 -383 9053 76 16 12 chrX 13376747 13377538 -149222392 - L1PA7 LINE L1 -3 6151 5365 2214 110 0 13 chrX 13377538 13377847 -149222083 - AluSg SINE Alu -5 305 1 9053 76 16 12 chrX 13377847 13379092 -149220838 - L1PA7 LINE L1 -789 5365 4106 1042 266 45 12 chrX 13379396 13379727 -149220203 + MER93a LTR ERV1 61 402 0 39060 66 6 3 chrX 13379762 13385886 -149214044 - L1PA5 LINE L1 -5 6149 5 689 235 55 0 chrX 13387926 13388143 -149211787 + L1ME3A LINE L1 5264 5492 -670 929 285 87 36 chrX 13389334 13389866 -149210064 + L1ME3A LINE L1 5476 6034 -136 2615 139 28 7 chrX 13390054 13390477 -149209453 - MSTB1 LTR MaLR 0 432 1 11954 150 17 10 chrX 13392229 13395084 -149204846 + L1MA3 LINE L1 2941 5832 -473 2037 102 25 4 chrX 13395084 13395396 -149204534 + AluSc SINE Alu 1 318 0 11954 150 17 10 chrX 13395396 13395874 -149204056 + L1MA3 LINE L1 5832 6305 0 541 319 88 31 chrX 13395886 13396206 -149203724 - L2 LINE L2 -1272 2042 1705 2041 124 24 0 chrX 13396396 13396686 -149203244 - AluSx SINE Alu -15 297 1 263 356 31 62 chrX 13396861 13396915 -149203015 - MLT1K LTR MaLR -206 382 328 6035 78 37 17 chrX 13396915 13398690 -149201240 + L1PA12 LINE L1 4363 6167 -1 263 356 31 62 chrX 13398690 13398927 -149201003 - MLT1K LTR MaLR -260 328 100 2994 204 51 92 chrX 13399118 13399811 -149200119 - L1MEc LINE L1 -2657 3558 2939 2092 153 103 41 chrX 13399811 13400249 -149199681 + MLT1C LTR MaLR 1 465 -2 2994 204 51 92 chrX 13400249 13400822 -149199108 - L1MEc LINE L1 -3276 2939 2344 1074 156 10 5 chrX 13400901 13401100 -149198830 - L1M2 LINE L1 -666 5646 5447 2036 128 47 37 chrX 13401100 13401474 -149198456 + L1MA9 LINE L1 5926 6311 -1 623 190 71 5 chrX 13401478 13401662 -149198268 - L1MEc LINE L1 -4029 2367 2172 233 323 10 21 chrX 13402088 13402184 -149197746 - L2 LINE L2 -1988 1326 1232 30 0 0 0 chrX 13403426 13403456 -149196474 + AT_rich Low_complexity Low_complexity 1 30 0 773 171 0 0 chrX 13403692 13403809 -149196121 - FLAM_C SINE Alu -25 118 2 192 259 161 70 chrX 13604667 13604810 -148995120 + MIR3 SINE MIR 31 186 -22 274 307 97 23 chrX 13605053 13605229 -148994701 - L2 LINE L2 -219 3053 2865 991 155 31 10 chrX 13605632 13605825 -148994105 + MER3 DNA MER1_type 6 202 -7 427 237 0 12 chrX 13606306 13606475 -148993455 + (TCCA)n Simple_repeat Simple_repeat 2 168 0 2203 102 0 0 chrX 13606576 13606889 -148993041 - AluSx SINE Alu 0 313 1 572 288 17 23 chrX 13607323 13607500 -148992430 - MIR3 SINE MIR -9 199 24 311 279 18 81 chrX 13607943 13608054 -148991876 - MER5A DNA MER1_type -64 125 22 1943 224 45 13 chrX 13608128 13608663 -148991267 + L1ME3 LINE L1 5600 6151 -11 489 245 269 14 chrX 13612938 13613146 -148986784 + MIR SINE MIR 2 262 0 250 304 13 13 chrX 13613262 13613341 -148986589 - L2 LINE L2 -1 3312 3234 2558 66 0 0 chrX 13613943 13614248 -148985682 + AluY SINE Alu 1 305 -6 2521 187 69 22 chrX 13615347 13615882 -148984048 + MLT1F1 LTR MaLR 1 560 -7 2423 179 43 37 chrX 13616553 13617002 -148982928 - L1MD3 LINE L1 -18 7977 7523 2233 166 96 19 chrX 13617002 13617471 -148982459 - MLT1D LTR MaLR 0 505 1 2423 179 43 37 chrX 13617471 13617584 -148982346 - L1MD3 LINE L1 -472 7523 7412 2055 86 48 67 chrX 13617679 13617993 -148981937 - AluSc SINE Alu -1 308 1 222 244 39 51 chrX 13618255 13618333 -148981597 + MIR SINE MIR 70 146 -116 330 244 19 119 chrX 13619008 13619168 -148980762 + MIR SINE MIR 73 216 -46 827 194 15 65 chrX 13619219 13619277 -148980653 + L1MC5 LINE L1 7660 7719 -242 734 181 181 5 chrX 13619277 13619465 -148980465 - MER58A DNA MER1_type 0 224 4 827 194 15 65 chrX 13619465 13619669 -148980261 + L1MC5 LINE L1 7719 7909 -52 583 261 33 7 chrX 13620156 13620309 -148979621 - MIR SINE MIR -35 227 71 1007 250 59 0 chrX 13621745 13621981 -148977949 - MIR SINE MIR -6 256 7 211 217 43 0 chrX 13622057 13622103 -148977827 - MIR SINE MIR -117 145 98 1104 258 130 18 chrX 13622276 13622721 -148977209 + MLT1H LTR MaLR 13 507 -42 550 308 95 29 chrX 13622867 13623276 -148976654 + LTR16B LTR ERVL 10 445 -5 2248 144 0 8 chrX 13623410 13623778 -148976152 + MER47A DNA MER2_type 1 365 -1 2342 113 3 0 chrX 13623873 13624216 -148975714 + AluSx SINE Alu 3 346 0 385 316 58 26 chrX 13624246 13624436 -148975494 + L2 LINE L2 2874 3069 -203 610 260 109 10 chrX 13624502 13624694 -148975236 - MIR SINE MIR -11 251 41 208 204 19 19 chrX 13624895 13624949 -148974981 + CT-rich Low_complexity Low_complexity 5 58 0 253 250 8 148 chrX 13625221 13625349 -148974581 + MIR SINE MIR 82 191 -71 210 77 39 39 chrX 13625528 13625580 -148974350 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2888 115 0 36 chrX 13625593 13625792 -148974138 + MSTA LTR MaLR 3 208 -220 2296 84 3 14 chrX 13625792 13626116 -148973814 + AluSp SINE Alu 1 321 0 2888 115 0 36 chrX 13626116 13626355 -148973575 + MSTA LTR MaLR 208 428 0 277 221 19 0 chrX 13626674 13626778 -148973152 + (TCCA)n Simple_repeat Simple_repeat 4 109 0 1370 214 75 17 chrX 13627048 13627393 -148972537 - MLT1A1 LTR MaLR 0 365 1 1833 144 114 59 chrX 13627393 13627533 -148972397 - MLT1A1-int LTR MaLR 0 1735 1604 1919 137 22 0 chrX 13627533 13627848 -148972082 + AluSx SINE Alu 1 321 0 1833 144 114 59 chrX 13627848 13628110 -148971820 - MLT1A1-int LTR MaLR -131 1604 1310 2063 144 0 35 chrX 13628336 13628568 -148971362 - MLT1A1-int LTR MaLR -1374 361 145 2703 91 6 3 chrX 13628568 13628931 -148970999 + THE1B LTR MaLR 1 364 0 2063 144 0 35 chrX 13628931 13629067 -148970863 - MLT1A1-int LTR MaLR -1590 145 6 1735 262 16 13 chrX 13629098 13629545 -148970385 - LTR16C LTR ERVL -6 485 38 22 56 0 0 chrX 13629681 13629717 -148970213 + AT_rich Low_complexity Low_complexity 1 36 0 2259 113 0 22 chrX 13630630 13630948 -148968982 + AluSq SINE Alu 1 311 -2 213 322 56 33 chrX 13631534 13631624 -148968306 + MIR3 SINE MIR 10 101 -107 417 304 37 48 chrX 13631702 13632054 -148967876 + MLT1H LTR MaLR 95 549 0 278 306 35 0 chrX 13632059 13632144 -148967786 + MIR3 SINE MIR 106 193 -15 225 0 0 0 chrX 13632927 13632952 -148966978 + (TG)n Simple_repeat Simple_repeat 1 25 0 1446 190 84 45 chrX 13633014 13633393 -148966537 + MLT1D LTR MaLR 6 399 -106 317 158 0 0 chrX 13633395 13633452 -148966478 - MLT1D LTR MaLR -385 120 64 297 141 13 26 chrX 13633453 13633531 -148966399 + CT-rich Low_complexity Low_complexity 2 78 0 2313 109 0 0 chrX 13633702 13634005 -148965925 - AluSx SINE Alu -9 303 1 912 156 0 0 chrX 13634735 13634995 -148964935 + (TG)n Simple_repeat Simple_repeat 1 260 0 896 166 10 60 chrX 13635194 13635393 -148964537 - MER20 DNA MER1_type 0 219 31 738 194 13 26 chrX 13635501 13635656 -148964274 + MLT1F LTR MaLR 3 155 -387 1002 191 103 72 chrX 13635664 13636082 -148963848 - LTR8A LTR ERV1 -8 719 289 2338 152 23 37 chrX 13636196 13636451 -148963479 - MSTA LTR MaLR 0 428 179 2162 109 0 0 chrX 13636451 13636760 -148963170 + AluSq SINE Alu 1 309 0 2338 152 23 37 chrX 13636760 13636937 -148962993 - MSTA LTR MaLR -249 179 1 406 200 71 43 chrX 13636992 13637132 -148962798 - LTR8 LTR ERV1 -547 144 1 1158 188 169 28 chrX 13637141 13637461 -148962469 + MLT1F LTR MaLR 176 540 -2 1283 240 10 23 chrX 13638065 13638486 -148961444 + L1ME1 LINE L1 5759 6332 -2 2889 166 230 3 chrX 13638747 13639381 -148960549 + L1M1 LINE L1 623 1400 -6165 * 6897 113 21 9 chrX 13639379 13639674 -148960256 + L1MA2 LINE L1 4387 4677 -1627 2117 138 7 0 chrX 13639674 13639979 -148959951 + AluY SINE Alu 1 307 -4 6897 113 21 9 chrX 13639979 13641568 -148958362 + L1MA2 LINE L1 4677 6292 -12 1299 110 35 0 chrX 13641586 13641814 -148958116 - L1 LINE L1 -1767 4379 4144 539 229 39 117 chrX 13642404 13642784 -148957146 - MLT1H LTR MaLR 0 549 95 355 329 79 22 chrX 13643106 13643455 -148956475 - MLT1J LTR MaLR -4 507 223 397 293 20 20 chrX 13643846 13643996 -148955934 + MIR SINE MIR 84 233 -29 205 232 179 0 chrX 13645275 13645331 -148954599 - MIR3 SINE MIR -10 198 133 201 100 25 25 chrX 13645334 13645374 -148954556 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 418 204 161 0 chrX 13645793 13645886 -148954044 + MER5A DNA MER1_type 1 108 -81 3490 140 87 55 chrX 13646142 13646904 -148953026 + LTR48 LTR ERV1 1 786 -1 1523 96 0 10 chrX 13646992 13647189 -148952741 + AluSx SINE Alu 1 195 -117 254 367 55 0 chrX 13647815 13647924 -148952006 - L2 LINE L2 -5 3267 3153 883 217 119 24 chrX 13647950 13648286 -148951644 - Charlie2 DNA MER1_type -38 2824 2457 619 264 109 20 chrX 13648357 13648558 -148951372 + MIR SINE MIR 42 260 -2 3790 152 9 16 chrX 13648676 13649322 -148950608 - LTR48B LTR ERV1 0 644 3 5486 120 19 4 chrX 13649669 13650649 -148949281 - L1PA16 LINE L1 -6 6160 5143 2761 178 51 29 chrX 13650753 13651166 -148948764 + L1ME2 LINE L1 5488 5923 -241 2180 133 24 3 chrX 13651166 13651504 -148948426 + MER7A DNA MER2_type 4 346 0 2761 178 51 29 chrX 13651504 13651752 -148948178 + L1ME2 LINE L1 5923 6164 0 239 405 24 24 chrX 13651778 13651946 -148947984 - L3 LINE CR1 -13 1564 1397 214 325 25 100 chrX 13651950 13652070 -148947860 - L3 LINE CR1 -614 963 853 627 270 168 13 chrX 13652868 13653094 -148946836 - MIR SINE MIR 0 262 2 234 91 0 0 chrX 13653443 13653476 -148946454 + (T)n Simple_repeat Simple_repeat 1 33 0 204 267 27 40 chrX 13653582 13653657 -148946273 + L2 LINE L2 262 335 -2979 940 221 21 45 chrX 13653764 13654134 -148945796 - LTR37B LTR ERV1 0 468 91 1987 155 0 3 chrX 13654140 13654450 -148945480 + AluJo SINE Alu 1 309 -3 940 221 21 45 chrX 13654175 13654590 -148945340 - LTR37B LTR ERV1 -377 91 7 218 156 0 0 chrX 13655290 13655322 -148944608 - MIR SINE MIR -10 252 221 865 278 14 9 chrX 13655623 13655846 -148944084 - MIR SINE MIR -5 257 34 1107 239 29 4 chrX 13656124 13656367 -148943563 + MIR SINE MIR 1 249 -13 294 29 0 0 chrX 13658536 13658571 -148941359 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 71 0 0 chrX 13658692 13658734 -148941196 + AT_rich Low_complexity Low_complexity 1 42 0 209 159 23 0 chrX 13658995 13659039 -148940891 + (TA)n Simple_repeat Simple_repeat 1 45 0 969 247 111 56 chrX 13659447 13659964 -148939966 + MLT1H1 LTR MaLR 7 540 -2 254 302 167 0 chrX 13660441 13660567 -148939363 - L2 LINE L2 -9 3304 3158 335 244 0 0 chrX 13660647 13660725 -148939205 + MER116 DNA Mariner 1 78 -2 870 195 12 32 chrX 13660965 13661211 -148938719 + L1MC5 LINE L1 7696 7936 -25 546 94 51 8 chrX 13661231 13661348 -148938582 + GA-rich Low_complexity Low_complexity 2 123 0 1569 197 121 26 chrX 13661390 13661812 -148938118 - MLT1C LTR MaLR -2 465 4 466 48 0 0 chrX 13661955 13662017 -148937913 - MADE1 DNA Mariner -1 79 18 9389 157 30 18 chrX 13662022 13665828 -148934102 + L1MA2 LINE L1 2424 6304 0 1611 139 0 8 chrX 13665848 13666092 -148933838 + L1PB4 LINE L1 5902 6143 -13 1004 158 103 5 chrX 13666097 13666300 -148933630 + MLT1B LTR MaLR 122 344 -46 1817 94 0 0 chrX 13667237 13667481 -148932449 - L1PA6 LINE L1 -2 6152 5909 322 257 28 18 chrX 13667715 13667824 -148932106 + (CATA)n Simple_repeat Simple_repeat 3 112 0 1433 210 97 44 chrX 13667932 13668366 -148931564 + MSTB2 LTR MaLR 1 457 0 2585 58 0 0 chrX 13668617 13668928 -148931002 + AluY SINE Alu 1 311 0 2502 72 0 10 chrX 13668933 13669238 -148930692 + AluSp SINE Alu 1 302 -11 216 0 0 0 chrX 13669729 13669753 -148930177 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 968 216 67 84 chrX 13669803 13669865 -148930065 - MER39 LTR ERV1 -2 687 625 194 0 39 0 chrX 13669865 13669891 -148930039 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 968 216 67 84 chrX 13669891 13670372 -148929558 - MER39 LTR ERV1 -64 625 5 428 325 67 57 chrX 13670546 13670934 -148928996 + L1M4 LINE L1 4733 5124 -1022 560 280 0 15 chrX 13670934 13671066 -148928864 + MER5B DNA MER1_type 1 130 -48 272 211 39 0 chrX 13671109 13671161 -148928769 + MER5A DNA MER1_type 136 189 0 265 282 0 12 chrX 13671360 13671445 -148928485 - LTR33 LTR ERVL 0 521 438 973 195 26 16 chrX 13671445 13671746 -148928184 + L1MD3 LINE L1 6059 7990 -5 430 285 77 14 chrX 13671748 13671955 -148927975 - LTR33 LTR ERVL -62 459 240 1558 234 6 70 chrX 13672106 13672581 -148927349 - MLT2B1 LTR ERVL -75 445 1 261 246 33 0 chrX 13673262 13673323 -148926607 - L2 LINE L2 -1 3271 3209 228 244 0 0 chrX 13673322 13673367 -148926563 - L2 LINE L2 -330 2983 2939 * 2085 208 59 81 chrX 13673560 13674166 -148925764 + MLT1E LTR MaLR 1 593 0 1085 256 79 43 chrX 13674753 13674910 -148925020 + LTR16A1 LTR ERVL 1 151 -306 321 82 0 0 chrX 13674910 13674959 -148924971 + (CA)n Simple_repeat Simple_repeat 2 50 0 1085 256 79 43 chrX 13674959 13675242 -148924688 + LTR16A1 LTR ERVL 151 457 0 2388 141 18 75 chrX 13675283 13675425 -148924505 - L1MB8 LINE L1 -2 6176 6027 1693 181 7 11 chrX 13675425 13675712 -148924218 + AluJo SINE Alu 1 286 -26 2388 141 18 75 chrX 13675712 13676072 -148923858 - L1MB8 LINE L1 -151 6027 5703 1850 242 10 30 chrX 13676076 13676572 -148923358 - LTR31 LTR ERV1 -9 610 125 1509 154 14 11 chrX 13676705 13676984 -148922946 - L1MB8 LINE L1 -471 5707 5428 899 143 0 0 chrX 13676992 13677125 -148922805 - FLAM_C SINE Alu -10 133 1 909 121 52 31 chrX 13677125 13677382 -148922548 - L1MB8 LINE L1 -738 5440 5180 370 195 39 0 chrX 13677382 13677459 -148922471 + L1ME3A LINE L1 6035 6114 -56 622 349 75 20 chrX 13677900 13678258 -148921672 - L2 LINE L2 0 3313 2936 280 232 43 0 chrX 13678330 13678399 -148921531 + MER3 DNA MER1_type 39 110 -99 * 703 180 7 7 chrX 13678397 13678547 -148921383 + MER3 DNA MER1_type 1985 2134 0 1294 208 28 91 chrX 13678555 13678886 -148921044 + MER39 LTR ERV1 5 455 -252 580 265 121 48 chrX 13678886 13679301 -148920629 + MER65A LTR ERV1 1 445 0 1294 208 28 91 chrX 13679301 13679510 -148920420 + MER39 LTR ERV1 455 676 -31 954 125 5 16 chrX 13679536 13679720 -148920210 + MER3 DNA MER1_type 2156 2337 0 1383 171 3 17 chrX 13680168 13680466 -148919464 + MER3 DNA MER1_type 2330 2623 0 257 252 74 89 chrX 13680573 13680708 -148919222 - L2 LINE L2 -576 2738 2606 24 0 0 0 chrX 13681372 13681396 -148918534 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chrX 13682066 13682091 -148917839 + AT_rich Low_complexity Low_complexity 1 25 0 2373 96 6 3 chrX 13682479 13682791 -148917139 - AluSq SINE Alu 0 313 1 28 0 0 0 chrX 13682854 13682882 -148917048 + AT_rich Low_complexity Low_complexity 1 28 0 2208 167 80 122 chrX 13683309 13683945 -148915985 + LTR8A LTR ERV1 34 638 -89 2247 107 0 7 chrX 13683945 13684243 -148915687 - AluY SINE Alu -15 296 1 2208 167 80 122 chrX 13684243 13684330 -148915600 + LTR8A LTR ERV1 638 727 0 2707 75 123 0 chrX 13684707 13685106 -148914824 + LTR7 LTR ERV1 1 448 -2 19674 88 10 15 chrX 13685108 13688117 -148911813 + HERVH LTR ERV1 1 2995 -4718 622 159 32 0 chrX 13688117 13688243 -148911687 + HERVH LTR ERV1 3161 3290 -4423 * 3182 109 4 6 chrX 13688233 13688736 -148911194 + HERVH LTR ERV1 3492 3993 -3720 4193 136 0 1 chrX 13688738 13689401 -148910529 + HERVH LTR ERV1 4488 5149 -2564 1301 139 19 0 chrX 13689402 13689618 -148910312 + HERVH LTR ERV1 5600 5819 -1894 2141 97 52 29 chrX 13689618 13689999 -148909931 + HERVH LTR ERV1 7324 7713 0 2525 72 102 5 chrX 13689999 13690402 -148909528 + LTR7 LTR ERV1 1 442 -8 610 183 29 120 chrX 13690410 13690497 -148909433 + LTR8A LTR ERV1 569 634 -93 2403 87 0 7 chrX 13690497 13690807 -148909123 - AluY SINE Alu -3 308 1 610 183 29 120 chrX 13690807 13690894 -148909036 + LTR8A LTR ERV1 634 727 0 381 250 0 27 chrX 13691513 13691625 -148908305 - MLT1K LTR MaLR -1 587 479 3502 123 10 26 chrX 13691701 13692280 -148907650 - MER34C LTR ERV1 -11 574 5 245 299 39 98 chrX 13692421 13692675 -148907255 - MLT1K LTR MaLR -158 430 192 244 204 41 0 chrX 13692854 13692903 -148907027 + Charlie2 DNA MER1_type 532 582 -2200 271 357 107 29 chrX 13693992 13694236 -148905694 - L2 LINE L2 -3 3269 3007 591 330 94 20 chrX 13694312 13694609 -148905321 + LTR16C LTR ERVL 81 399 -92 381 185 12 0 chrX 13694686 13694767 -148905163 + MLT1H LTR MaLR 468 549 0 879 315 178 30 chrX 13694778 13694818 -148905112 - L2 LINE L2 -1241 2073 2040 984 213 5 0 chrX 13694818 13695006 -148904924 - MER5A DNA MER1_type 0 189 1 879 315 178 30 chrX 13695006 13695632 -148904298 - L2 LINE L2 -1274 2040 1308 956 192 66 75 chrX 13695933 13696251 -148903679 - MER39 LTR ERV1 -2 705 391 232 218 238 40 chrX 13696338 13696439 -148903491 - MER34 LTR ERV1 -421 121 1 385 325 36 31 chrX 13697264 13697458 -148902472 + L2 LINE L2 3117 3311 -2 2126 188 5 20 chrX 13697614 13698012 -148901918 - MSTD LTR MaLR 0 396 5 784 279 68 62 chrX 13698357 13698812 -148901118 - MLT1J LTR MaLR -51 460 3 1909 146 14 17 chrX 13700234 13700529 -148899401 + AluJb SINE Alu 3 296 -16 2607 156 59 2 chrX 13701287 13701729 -148898201 - LTR24 LTR ERV1 0 467 1 2356 119 0 0 chrX 13701816 13702128 -148897802 + AluSx SINE Alu 1 312 0 239 143 41 0 chrX 13702841 13702890 -148897040 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 244 0 0 0 chrX 13703107 13703134 -148896796 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2010 87 68 0 chrX 13703134 13703399 -148896531 - AluSp SINE Alu -30 283 1 898 93 0 0 chrX 13703656 13703785 -148896145 - L1PA7 LINE L1 0 6154 6026 23 54 0 0 chrX 13703896 13703933 -148895997 + AT_rich Low_complexity Low_complexity 1 37 0 806 311 43 34 chrX 13704044 13704485 -148895445 + L2 LINE L2 2447 2891 -423 190 255 5 181 chrX 13704464 13704668 -148895262 + L2 LINE L2 2997 3164 -149 * 657 135 0 0 chrX 13704794 13704890 -148895040 - FRAM SINE Alu -11 165 70 454 311 0 0 chrX 13704890 13705009 -148894921 + L2 LINE L2 3195 3313 0 1775 153 78 9 chrX 13705158 13705479 -148894451 - MER61A LTR ERV1 0 343 1 222 287 124 8 chrX 13705708 13705837 -148894093 - L2 LINE L2 -827 2487 2344 208 284 40 14 chrX 13705967 13706041 -148893889 + L2 LINE L2 3193 3268 -4 2771 149 9 13 chrX 13706060 13706511 -148893419 - LOR1b LTR ERV1 0 461 13 980 136 7 0 chrX 13706517 13706657 -148893273 + MER2 DNA MER2_type 2 142 -203 376 115 0 0 chrX 13706708 13706769 -148893161 + MER2 DNA MER2_type 135 195 -150 1746 223 132 43 chrX 13706791 13707437 -148892493 - MER50 LTR ERV1 -19 715 13 180 78 0 59 chrX 13707455 13707506 -148892424 + (TTTTTA)n Simple_repeat Simple_repeat 1 48 0 253 239 0 0 chrX 13707514 13707560 -148892370 + MER2 DNA MER2_type 298 343 -2 933 198 0 24 chrX 13707845 13707966 -148891964 - MER58A DNA MER1_type -174 167 50 2379 84 3 0 chrX 13707966 13708263 -148891667 + AluSx SINE Alu 1 298 -14 933 198 0 24 chrX 13708263 13708308 -148891622 - MER58A DNA MER1_type -291 50 5 183 129 0 0 chrX 13708328 13708359 -148891571 + (CATATA)n Simple_repeat Simple_repeat 4 34 0 182 259 198 35 chrX 13708471 13708587 -148891343 + L2 LINE L2 2447 2581 -733 324 252 37 59 chrX 13709697 13709832 -148890098 + L1ME4a LINE L1 5521 5652 -2156 1831 151 4 4 chrX 13709834 13710113 -148889817 + AluJo SINE Alu 1 279 -33 207 0 0 0 chrX 13710129 13710152 -148889778 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 287 196 0 0 chrX 13710157 13710208 -148889722 + MER20 DNA MER1_type 169 219 0 650 274 231 63 chrX 13711089 13711177 -148888753 + L3 LINE CR1 586 658 -919 2320 183 157 9 chrX 13711177 13711744 -148888186 - MLT1E1 LTR MaLR -3 651 1 650 274 231 63 chrX 13711744 13712385 -148887545 + L3 LINE CR1 658 1438 -139 * 828 306 156 41 chrX 13712382 13713613 -148886317 + L2 LINE L2 1527 2899 -415 455 269 62 35 chrX 13713713 13713858 -148886072 + MLT1J2 LTR MaLR 289 437 -13 279 262 78 0 chrX 13713865 13713968 -148885962 + MLT1J LTR MaLR 399 509 -2 737 264 35 15 chrX 13714157 13714358 -148885572 - MIR SINE MIR -12 250 46 216 247 156 0 chrX 13714480 13714557 -148885373 - MER5C DNA MER1_type 0 324 236 374 246 59 8 chrX 13714586 13714704 -148885226 - MER5C DNA MER1_type -200 124 1 2024 123 102 15 chrX 13714799 13715133 -148884797 - THE1B LTR MaLR 0 364 2 2056 173 65 18 chrX 13715435 13715834 -148884096 + MER47B DNA MER2_type 1 418 0 3871 177 84 4 chrX 13715958 13716830 -148883100 + L1MB5 LINE L1 5228 6312 0 2428 216 42 82 chrX 13717399 13718254 -148881676 - L1MC4 LINE L1 -1 8041 7193 329 263 38 75 chrX 13718475 13718741 -148881189 + L1ME4a LINE L1 5761 6016 -105 222 138 17 52 chrX 13719022 13719080 -148880850 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 2498 123 70 5 chrX 13719327 13719725 -148880205 + MSTA LTR MaLR 1 424 -4 608 66 55 0 chrX 13719729 13719820 -148880110 + MSTA-int LTR MaLR 1 96 -1555 323 113 19 0 chrX 13719817 13719870 -148880060 + MSTB-int LTR MaLR 1598 1651 0 * 2392 166 21 9 chrX 13719870 13720291 -148879639 + MSTB LTR MaLR 1 426 0 621 169 71 71 chrX 13720364 13720469 -148879461 - L1MC5 LINE L1 -58 7903 7796 2600 216 10 10 chrX 13720469 13720988 -148878942 + LTR40a LTR ERVL 1 519 0 621 169 71 71 chrX 13720988 13721066 -148878864 - L1MC5 LINE L1 -164 7797 7720 1194 214 65 25 chrX 13721179 13721502 -148878428 - MER46C DNA MER2_type -1 337 2 244 286 0 0 chrX 13722156 13722212 -148877718 - L2 LINE L2 -18 3254 3199 204 40 0 0 chrX 13722261 13722286 -148877644 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 285 371 50 7 chrX 13722294 13722434 -148877496 - L2 LINE L2 -12 3260 3115 194 336 69 30 chrX 13722984 13723115 -148876815 - L3 LINE CR1 -1325 252 117 4297 30 57 0 chrX 13723826 13724354 -148875576 + LTR6B LTR ERV1 1 558 0 185 329 47 35 chrX 13724865 13724950 -148874980 + L2 LINE L2 3187 3272 0 885 189 0 0 chrX 13724956 13725099 -148874831 + FRAM SINE Alu 1 140 -36 216 97 0 0 chrX 13725106 13725137 -148874793 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1832 231 98 43 chrX 13725280 13725842 -148874088 + MLT1E LTR MaLR 1 593 0 337 213 0 0 chrX 13725967 13726028 -148873902 - MER2 DNA MER2_type 0 345 285 502 208 0 10 chrX 13726049 13726145 -148873785 - MER8 DNA MER2_type -143 96 2 227 200 123 15 chrX 13726256 13726321 -148873609 - L2 LINE L2 -62 3251 3180 357 24 0 0 chrX 13727538 13727580 -148872350 + (CA)n Simple_repeat Simple_repeat 1 42 0 325 208 115 97 chrX 13727746 13727772 -148872158 + MLT1G LTR MaLR 219 243 -347 2303 134 86 8 chrX 13727772 13728167 -148871763 + MSTB LTR MaLR 1 426 0 325 208 115 97 chrX 13728167 13728366 -148871564 + MLT1G LTR MaLR 243 448 -142 1481 72 10 0 chrX 13728377 13728572 -148871358 + L1PA10 LINE L1 5967 6163 -5 2174 131 0 6 chrX 13729228 13729542 -148870388 + AluSq SINE Alu 1 312 -1 309 51 0 0 chrX 13729654 13729693 -148870237 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chrX 13730071 13730095 -148869835 + AT_rich Low_complexity Low_complexity 1 24 0 600 269 88 13 chrX 13730142 13730369 -148869561 + MIR SINE MIR 2 245 -17 38 75 0 0 chrX 13730419 13730499 -148869431 + AT_rich Low_complexity Low_complexity 1 80 0 232 265 68 102 chrX 13730510 13730657 -148869273 + MIR3 SINE MIR 37 178 -30 901 201 90 0 chrX 13730754 13730943 -148868987 + MER63A DNA MER1_type 5 210 0 2270 127 13 32 chrX 13731728 13732106 -148867824 - THE1C LTR MaLR -4 371 1 1017 261 139 24 chrX 13732463 13732873 -148867057 + LTR16A1 LTR ERVL 1 457 0 3541 242 55 27 chrX 13732913 13734257 -148865673 + L1ME2 LINE L1 369 1674 -4541 2373 92 3 0 chrX 13734257 13734562 -148865368 + AluSp SINE Alu 1 306 -7 3541 242 55 27 chrX 13734562 13734942 -148864988 + L1ME2 LINE L1 1674 2042 -4173 1993 217 127 22 chrX 13734942 13735476 -148864454 + MLT1E LTR MaLR 1 590 -3 3541 242 55 27 chrX 13735476 13736064 -148863866 + L1ME2 LINE L1 2042 2812 -3403 2725 135 19 12 chrX 13736365 13736788 -148863142 + MSTB LTR MaLR 1 426 0 682 283 31 16 chrX 13737682 13737873 -148862057 - LTR16C LTR ERVL -59 432 239 380 307 58 0 chrX 13737905 13738042 -148861888 - LTR16C LTR ERVL -342 149 5 563 290 88 13 chrX 13738437 13738675 -148861255 + L1MC1 LINE L1 5667 5922 -1886 1214 250 112 61 chrX 13739293 13739425 -148860505 + Charlie2 DNA MER1_type 7 131 -2651 1722 189 21 50 chrX 13739425 13739801 -148860129 - MLT1A1 LTR MaLR 0 365 1 1214 250 112 61 chrX 13739801 13740224 -148859706 + Charlie2 DNA MER1_type 131 590 -2192 1539 284 66 19 chrX 13740439 13741236 -148858694 - L2 LINE L2 -1 3312 2478 3599 218 44 50 chrX 13741236 13742658 -148857272 + L1ME2 LINE L1 3525 5110 -1123 2174 146 2 88 chrX 13742658 13743091 -148856839 - MSTD LTR MaLR 0 396 1 3599 218 44 50 chrX 13743091 13744198 -148855732 + L1ME2 LINE L1 5110 6223 -10 776 144 0 38 chrX 13744312 13744444 -148855486 + FLAM_C SINE Alu 1 127 -16 253 164 0 73 chrX 13744732 13744787 -148855143 - L2 LINE L2 0 3313 3263 252 0 0 0 chrX 13746218 13746246 -148853684 + (GA)n Simple_repeat Simple_repeat 1 28 0 2597 174 68 8 chrX 13748769 13749280 -148850650 + MLT1F LTR MaLR 1 542 0 23 0 0 0 chrX 13749445 13749468 -148850462 + AT_rich Low_complexity Low_complexity 1 23 0 1404 160 66 44 chrX 13749839 13750158 -148849772 + L1MC1 LINE L1 6002 6327 -6 502 215 30 58 chrX 13750235 13750481 -148849449 - L1MEc LINE L1 -3862 2353 2171 323 267 204 40 chrX 13751031 13751207 -148848723 - L1MEc LINE L1 -4936 1269 1065 811 175 0 31 chrX 13751207 13751367 -148848563 + FAM SINE Alu 1 43 -6 1774 175 3 3 chrX 13751940 13752237 -148847693 + AluJb SINE Alu 5 301 -11 1500 152 38 9 chrX 13752253 13752568 -148847362 - MER33 DNA MER1_type 0 324 1 1671 168 65 9 chrX 13752748 13753069 -148846861 - MER58B DNA MER1_type 0 341 3 3292 119 26 48 chrX 13753123 13753701 -148846229 + MER34B LTR ERV1 1 565 0 22 0 0 0 chrX 13754151 13754173 -148845757 + AT_rich Low_complexity Low_complexity 1 22 0 556 270 28 48 chrX 13754758 13755010 -148844920 + MLT1J LTR MaLR 231 477 -34 883 178 32 16 chrX 13755104 13755289 -148844641 - MER5A DNA MER1_type -1 188 1 243 203 0 0 chrX 13755334 13755393 -148844537 + (CATAG)n Simple_repeat Simple_repeat 1 59 0 2847 122 19 6 chrX 13755403 13755870 -148844060 - Tigger3(Golem) DNA MER2_type 0 3029 2557 4702 102 4 59 chrX 13755877 13756677 -148843253 - L1PB3 LINE L1 -7 6147 5392 1225 98 84 35 chrX 13756677 13756962 -148842968 - Tigger3(Golem) DNA MER2_type -453 2576 2278 632 168 9 0 chrX 13756953 13757060 -148842870 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 314 282 29 35 chrX 13758782 13758956 -148840974 - MER104 DNA Tc2 -3 177 5 1316 20 0 0 chrX 13759010 13759198 -148840732 + L1PA8 LINE L1 6020 6207 0 296 260 13 40 chrX 13759198 13759348 -148840582 + L1ME4a LINE L1 5964 6109 -12 268 320 50 99 chrX 13761046 13761227 -148838703 - L2 LINE L2 -308 2964 2795 469 329 36 29 chrX 13761281 13761448 -148838482 - L2 LINE L2 -467 2847 2676 1411 129 9 0 chrX 13761448 13761665 -148838265 - MER20 DNA MER1_type 0 219 1 469 329 36 29 chrX 13761665 13761771 -148838159 - L2 LINE L2 -638 2676 2572 484 141 207 8 chrX 13761796 13761917 -148838013 - MIR SINE MIR -79 183 39 356 266 74 79 chrX 13761926 13762129 -148837801 - L2 LINE L2 -774 2540 2339 2871 132 65 8 chrX 13762129 13762636 -148837294 + MER34B LTR ERV1 1 536 -29 280 165 8 83 chrX 13762716 13762825 -148837105 + MER34B-int LTR ERV1 1022 1716 -4824 265 187 40 13 chrX 13762893 13762968 -148836962 + MER34B-int LTR ERV1 1305 1381 -4950 977 192 166 79 chrX 13763138 13763346 -148836584 + MER34B-int LTR ERV1 287 294 -4642 1923 99 96 0 chrX 13763346 13763628 -148836302 - AluSg SINE Alu 0 310 2 977 192 166 79 chrX 13763628 13763860 -148836070 + MER34B-int LTR ERV1 294 505 -4431 10893 202 71 69 chrX 13764169 13765039 -148834891 + MER34B-int LTR ERV1 883 1750 -3186 287 0 93 19 chrX 13765045 13765099 -148834831 + (TTATA)n Simple_repeat Simple_repeat 4 61 0 2300 113 0 7 chrX 13765099 13765394 -148834536 - AluSx SINE Alu -17 295 1 10893 202 71 69 chrX 13765394 13766002 -148833928 + MER34B-int LTR ERV1 1750 2356 -2580 2452 53 0 3 chrX 13766002 13766303 -148833627 + AluY SINE Alu 1 300 -11 10893 202 71 69 chrX 13766303 13767410 -148832520 + MER34B-int LTR ERV1 2356 3460 -1476 2271 85 0 0 chrX 13767410 13767691 -148832239 - AluSg SINE Alu -11 299 19 10893 202 71 69 chrX 13767691 13768482 -148831448 + MER34B-int LTR ERV1 3460 4270 -666 1088 157 0 0 chrX 13768482 13768648 -148831282 - FRAM SINE Alu 0 166 1 10893 202 71 69 chrX 13768648 13769150 -148830780 + MER34B-int LTR ERV1 4270 4770 -166 2337 105 0 3 chrX 13769291 13769605 -148830325 - AluSq SINE Alu 0 313 1 3236 108 96 8 chrX 13769757 13770276 -148829654 + MER34B LTR ERV1 1 565 0 405 247 173 19 chrX 13770276 13770438 -148829492 - L2 LINE L2 -972 2342 2156 411 286 223 5 chrX 13770691 13770897 -148829033 + MIR SINE MIR 12 262 0 402 33 295 0 chrX 13771061 13771122 -148828808 - MADE1 DNA Mariner 0 80 2 429 299 24 8 chrX 13771557 13771684 -148828246 - MER5B DNA MER1_type -8 170 42 2254 199 88 35 chrX 13771691 13772350 -148827580 + L1ME3 LINE L1 5447 6140 -22 192 188 0 0 chrX 13772401 13772433 -148827497 + MER5B DNA MER1_type 131 162 -16 263 260 290 10 chrX 13772776 13772876 -148827054 - MIR3 SINE MIR -8 200 73 263 294 87 0 chrX 13773222 13773314 -148826616 + MIR SINE MIR 51 150 -58 431 299 176 31 chrX 13774251 13774569 -148825361 - L1MC4a LINE L1 -1458 6350 5987 4802 211 28 12 chrX 13774584 13775721 -148824209 - L1MC4a LINE L1 -2 7806 6652 2914 205 23 82 chrX 13775753 13775918 -148824012 + L1ME1 LINE L1 5164 5337 -829 2131 66 27 17 chrX 13775918 13776219 -148823711 + L1PA10 LINE L1 5861 6164 -4 2914 205 23 82 chrX 13776219 13776717 -148823213 + L1ME1 LINE L1 5337 5737 -429 5333 44 38 0 chrX 13776717 13777379 -148822551 + L1PA10 LINE L1 5471 6157 -11 2914 205 23 82 chrX 13777379 13777784 -148822146 + L1ME1 LINE L1 5737 6164 -2 1425 211 10 6 chrX 13778456 13778769 -148821161 + MER58B DNA MER1_type 28 341 0 294 277 157 19 chrX 13779326 13779485 -148820445 + MIR SINE MIR 28 208 -54 251 333 0 39 chrX 13780433 13780511 -148819419 - L2 LINE L2 -5 3308 3234 * 317 237 26 13 chrX 13780502 13780578 -148819352 + MIR SINE MIR 25 101 -107 970 73 0 0 chrX 13780769 13780892 -148819038 + AluY SINE Alu 172 294 -17 1586 171 11 21 chrX 13781113 13781393 -148818537 + AluJo SINE Alu 6 282 -30 242 203 0 29 chrX 13781400 13781469 -148818461 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 579 269 150 9 chrX 13781496 13781935 -148817995 + MER90 LTR ERV1 3 575 0 2256 78 14 0 chrX 13782189 13782483 -148817447 + AluSx SINE Alu 1 298 -14 235 165 165 113 chrX 13782628 13782761 -148817169 + MIR SINE MIR 52 191 -71 1853 191 55 117 chrX 13782945 13783559 -148816371 - MLT1G1 LTR MaLR -12 583 8 499 167 11 11 chrX 13783745 13783835 -148816095 + AluJo SINE Alu 47 136 -176 265 206 29 39 chrX 13784300 13784402 -148815528 + L1MC5 LINE L1 7817 7917 -44 756 149 0 0 chrX 13786456 13786570 -148813360 - FLAM_C SINE Alu -29 114 1 2509 151 50 52 chrX 13786604 13787108 -148812822 + MLT1D LTR MaLR 1 503 -2 202 197 42 28 chrX 13787457 13787528 -148812402 + A-rich Low_complexity Low_complexity 2 73 0 1071 266 63 18 chrX 13787562 13787961 -148811969 - LTR16A1 LTR ERVL -40 417 1 254 0 100 67 chrX 13788093 13788153 -148811777 + CT-rich Low_complexity Low_complexity 1 62 0 505 169 165 115 chrX 13788614 13788857 -148811073 - MER112 DNA MER1_type -1 255 1 1750 208 72 11 chrX 13789124 13789557 -148810373 + MLT1C LTR MaLR 6 464 -3 353 229 12 12 chrX 13790554 13790637 -148809293 + MIR SINE MIR 110 192 -70 814 263 199 8 chrX 13790648 13791029 -148808901 + LTR16A1 LTR ERVL 2 455 -2 2121 171 30 0 chrX 13791315 13791712 -148808218 + LTR53 LTR ERVL 108 516 -3 2092 102 0 0 chrX 13791747 13792021 -148807909 + AluSg SINE Alu 1 274 -36 219 36 0 0 chrX 13792027 13792055 -148807875 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 227 210 65 0 chrX 13793452 13793514 -148806416 - MLT1L LTR MaLR -215 400 335 436 330 127 65 chrX 13793545 13793963 -148805967 + L2 LINE L2 2818 3261 -11 315 146 0 0 chrX 13793968 13794023 -148805907 + (TGGA)n Simple_repeat Simple_repeat 4 58 0 349 287 148 0 chrX 13794024 13794139 -148805791 + MIR3 SINE MIR 47 178 -30 196 158 0 26 chrX 13794107 13794145 -148805785 + L3 LINE CR1 1520 1556 -21 * 735 183 112 12 chrX 13795116 13795285 -148804645 + MLT1J2 LTR MaLR 1 186 -264 3476 58 5 7 chrX 13795286 13795733 -148804197 + L1PA7 LINE L1 5708 6153 -1 2235 40 22 4 chrX 13796177 13796485 -148803445 + AluY SINE Alu 1 313 0 1036 279 46 29 chrX 13796511 13796967 -148802963 - LTR16B LTR ERVL 0 464 1 734 284 11 53 chrX 13797161 13797446 -148802484 - MLT1J LTR MaLR -6 505 233 211 176 0 0 chrX 13797873 13797907 -148802023 + polypyrimidine Low_complexity Low_complexity 2 35 0 580 217 54 116 chrX 13801593 13801869 -148798061 + HAL1 LINE L1 78 336 -2171 652 289 123 35 chrX 13801871 13802155 -148797775 + HAL1 LINE L1 499 807 -1700 564 289 71 10 chrX 13802173 13802370 -148797560 - MIR SINE MIR -2 260 52 366 286 102 14 chrX 13802558 13802705 -148797225 + LTR33 LTR ERVL 3 162 -359 735 242 32 5 chrX 13802813 13803003 -148796927 + LTR33 LTR ERVL 327 521 0 1737 155 11 0 chrX 13803254 13803518 -148796412 + AluJb SINE Alu 1 267 -45 532 167 183 0 chrX 13804879 13805005 -148794925 + MER5B DNA MER1_type 1 149 -29 1311 193 175 6 chrX 13805005 13805337 -148794593 + MLT1G1 LTR MaLR 208 595 0 402 243 105 32 chrX 13805339 13805487 -148794443 - MIR SINE MIR -63 145 11 558 233 59 63 chrX 13805892 13806163 -148793767 - L1ME4a LINE L1 -199 5922 5653 892 201 0 0 chrX 13806163 13806327 -148793603 + AluJb SINE Alu 123 286 -26 26 30 0 0 chrX 13806432 13806465 -148793465 + AT_rich Low_complexity Low_complexity 1 33 0 2590 237 115 13 chrX 13806506 13807404 -148792526 + L2 LINE L2 1777 2765 -549 757 157 0 95 chrX 13807480 13807627 -148792303 - FLAM_A SINE Alu 0 133 1 641 209 51 45 chrX 13807633 13807810 -148792120 + L2 LINE L2 3136 3313 0 2146 225 46 0 chrX 13808265 13808763 -148791167 + L1 LINE L1 2537 3057 -3089 2473 77 0 10 chrX 13808774 13809086 -148790844 + AluY SINE Alu 3 311 0 31 0 0 0 chrX 13809134 13809165 -148790765 + AT_rich Low_complexity Low_complexity 1 31 0 8290 103 12 23 chrX 13809204 13810404 -148789526 - Tigger1 DNA MER2_type 0 2418 1233 234 68 182 0 chrX 13810408 13810452 -148789478 + L1 LINE L1 3472 3523 -2623 6083 152 21 8 chrX 13810463 13811819 -148788111 + L1MA9 LINE L1 4794 6170 -142 351 0 0 0 chrX 13811819 13811858 -148788072 + (CA)n Simple_repeat Simple_repeat 1 39 0 6083 152 21 8 chrX 13811858 13811968 -148787962 + L1MA9 LINE L1 6170 6277 -35 528 225 18 0 chrX 13812142 13812253 -148787677 - L2 LINE L2 0 3313 3201 2284 89 3 3 chrX 13812518 13812821 -148787109 - AluY SINE Alu -8 303 1 1583 208 142 52 chrX 13812850 13813364 -148786566 - MER34B LTR ERV1 -5 560 1 2163 103 14 0 chrX 13813467 13813759 -148786171 - AluSx SINE Alu -16 296 1 234 91 0 0 chrX 13813847 13813880 -148786050 + (A)n Simple_repeat Simple_repeat 1 33 0 2417 84 3 0 chrX 13813889 13814199 -148785731 + AluY SINE Alu 1 311 0 294 289 68 38 chrX 13814487 13814656 -148785274 - MIR SINE MIR -62 146 3 1167 173 0 0 chrX 13814963 13815136 -148784794 - FAM SINE Alu -2 173 1 380 246 53 106 chrX 13815165 13815287 -148784643 + L1ME3A LINE L1 5702 5805 -365 2216 68 32 4 chrX 13815287 13815588 -148784342 - AluSq SINE Alu 0 309 1 380 246 53 106 chrX 13815588 13815728 -148784202 + L1ME3A LINE L1 5805 5951 -219 3083 167 47 88 chrX 13816545 13817269 -148782661 + LTR8A LTR ERV1 34 727 0 52 50 0 0 chrX 13817782 13817862 -148782068 + AT_rich Low_complexity Low_complexity 1 80 0 212 164 21 50 chrX 13818499 13818649 -148781281 + GA-rich Low_complexity Low_complexity 1 145 0 622 191 0 9 chrX 13818813 13818928 -148781002 + U5 snRNA snRNA 1 114 -2 338 21 0 42 chrX 13818929 13818977 -148780953 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 312 218 0 0 chrX 13819128 13819183 -148780747 - LTR33 LTR ERVL -91 430 376 2049 141 0 0 chrX 13819683 13819980 -148779950 + AluJo SINE Alu 1 297 -15 757 265 138 2 chrX 13820417 13820814 -148779116 - LTR33 LTR ERVL -2 519 1 348 182 84 94 chrX 13820814 13820952 -148778978 + L1ME4a LINE L1 5664 5797 -324 1071 139 0 37 chrX 13821048 13821285 -148778645 + AluJb SINE Alu 2 297 -15 251 235 106 12 chrX 13821299 13821384 -148778546 + L1ME4a LINE L1 5835 5927 -194 435 95 0 0 chrX 13821477 13821551 -148778379 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 207 259 0 0 chrX 13822083 13822168 -148777762 + (CAT)n Simple_repeat Simple_repeat 1 85 0 214 284 49 0 chrX 13822262 13822343 -148777587 + L3 LINE CR1 655 739 -838 367 161 16 65 chrX 13822380 13822504 -148777426 - Charlie7 DNA MER1_type -42 2570 2453 301 319 0 11 chrX 13823316 13823410 -148776520 + MIR SINE MIR 21 113 -149 186 270 110 100 chrX 13823541 13823641 -148776289 - MER5A DNA MER1_type -34 155 55 1761 143 0 43 chrX 13823645 13823945 -148775985 + AluJo SINE Alu 1 287 -25 2548 58 0 7 chrX 13824159 13824467 -148775463 - AluY SINE Alu -5 306 1 424 264 167 7 chrX 13824733 13824877 -148775053 - MER5A DNA MER1_type -13 176 10 2306 152 102 76 chrX 13824976 13825542 -148774388 - LTR49 LTR ERV1 -14 581 1 198 0 0 0 chrX 13825599 13825621 -148774309 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chrX 13826736 13826758 -148773172 + AT_rich Low_complexity Low_complexity 1 22 0 1937 140 3 3 chrX 13826762 13827047 -148772883 - AluJb SINE Alu -27 285 1 878 256 89 15 chrX 13827052 13827322 -148772608 - L1ME3A LINE L1 -2 6168 5879 1415 192 14 68 chrX 13827381 13827751 -148772179 + MLT1A2 LTR MaLR 1 350 -24 26 30 0 0 chrX 13827757 13827790 -148772140 + AT_rich Low_complexity Low_complexity 1 33 0 658 132 0 0 chrX 13827814 13827905 -148772025 - FRAM SINE Alu -55 121 31 272 169 231 0 chrX 13829669 13829734 -148770196 + MER116 DNA Mariner 1 80 0 31 58 0 0 chrX 13830018 13830070 -148769860 + AT_rich Low_complexity Low_complexity 1 52 0 1109 175 26 14 chrX 13830188 13830407 -148769523 - MER20 DNA MER1_type 0 219 8 676 83 0 10 chrX 13830523 13830619 -148769311 + MER53 DNA DNA 1 95 -94 1928 151 7 13 chrX 13830619 13830924 -148769006 + AluJo SINE Alu 1 303 -9 368 260 73 19 chrX 13831079 13831221 -148768709 + MIR SINE MIR 11 153 -55 302 281 10 31 chrX 13831758 13831854 -148768076 + MIR3 SINE MIR 108 201 -7 2168 112 0 7 chrX 13832167 13832494 -148767436 + AluSx SINE Alu 1 312 0 1991 161 0 0 chrX 13832496 13832800 -148767130 + AluJo SINE Alu 1 304 -8 2594 93 48 20 chrX 13832856 13833210 -148766720 + THE1B LTR MaLR 1 364 0 13101 76 3 6 chrX 13833210 13834794 -148765136 + THE1B-int LTR MaLR 1 1580 0 2471 113 48 20 chrX 13834794 13835148 -148764782 + THE1B LTR MaLR 1 364 0 887 160 0 8 chrX 13835321 13835452 -148764478 - FLAM_C SINE Alu -3 130 1 1888 146 0 11 chrX 13835511 13835823 -148764107 + AluJb SINE Alu 1 309 0 871 306 66 14 chrX 13835859 13836297 -148763633 - L1ME3A LINE L1 -224 5946 5486 2601 100 5 40 chrX 13836318 13836747 -148763183 + L1MA8 LINE L1 5696 6109 -182 843 134 14 157 chrX 13836748 13836964 -148762966 - AluJo SINE Alu -8 304 120 269 143 0 71 chrX 13836964 13837034 -148762896 - L1MD3 LINE L1 -5 7990 7926 3526 148 15 26 chrX 13837034 13837541 -148762389 + L1MB2 LINE L1 5553 6053 -118 2320 112 0 0 chrX 13837541 13837846 -148762084 + AluSc SINE Alu 1 305 -4 3526 148 15 26 chrX 13837846 13837955 -148761975 + L1MB2 LINE L1 6053 6162 -9 1760 135 83 0 chrX 13837955 13838221 -148761709 - AluJo SINE Alu -24 288 1 901 78 94 8 chrX 13838238 13838366 -148761564 - MER85 DNA T2_type 0 139 1 373 239 0 11 chrX 13838371 13838459 -148761471 + L1MC4 LINE L1 6935 7021 -1021 3715 36 0 0 chrX 13838462 13838876 -148761054 + L1PA5 LINE L1 5738 6151 -3 22 70 0 0 chrX 13838876 13838919 -148761011 + AT_rich Low_complexity Low_complexity 1 43 0 444 254 36 0 chrX 13840354 13840464 -148759466 - MER5A DNA MER1_type -75 114 1 1403 160 16 57 chrX 13840597 13840699 -148759231 - L1MB8 LINE L1 0 6178 6073 1707 180 33 44 chrX 13840699 13841065 -148758865 + MLT1A1 LTR MaLR 1 362 -3 1403 160 16 57 chrX 13841065 13841280 -148758650 - L1MB8 LINE L1 -105 6073 5874 1951 163 0 3 chrX 13841282 13841690 -148758240 - AluJb SINE Alu 0 407 1 759 161 0 94 chrX 13842403 13842422 -148757508 - FRAM SINE Alu -158 154 135 2749 127 46 5 chrX 13842422 13842833 -148757097 + MSTA LTR MaLR 1 428 0 759 161 0 94 chrX 13842833 13842883 -148757047 - FRAM SINE Alu -177 135 82 3065 90 28 14 chrX 13842883 13843305 -148756625 + MSTA LTR MaLR 1 428 0 759 161 0 94 chrX 13843305 13843383 -148756547 - FRAM SINE Alu -230 82 20 21 0 0 0 chrX 13844128 13844149 -148755781 + AT_rich Low_complexity Low_complexity 1 21 0 1719 108 12 0 chrX 13844184 13844434 -148755496 - L1MA4 LINE L1 -4 6296 6044 4350 162 26 24 chrX 13844434 13845232 -148754698 - L1MA9 LINE L1 -57 6255 5456 188 406 89 6 chrX 13845453 13845633 -148754297 - L2 LINE L2 -73 3199 3005 413 257 96 15 chrX 13845998 13846134 -148753796 - MIR SINE MIR -6 256 110 462 282 58 51 chrX 13846250 13846406 -148753524 - MER5B DNA MER1_type -16 162 6 758 273 110 35 chrX 13846803 13847177 -148752753 + LTR16C LTR ERVL 90 491 0 22 0 0 0 chrX 13847599 13847621 -148752309 + AT_rich Low_complexity Low_complexity 1 22 0 2288 96 0 19 chrX 13848297 13848637 -148751293 + AluSx SINE Alu 1 312 0 38 51 0 0 chrX 13848639 13848698 -148751232 + AT_rich Low_complexity Low_complexity 1 59 0 267 188 0 59 chrX 13848753 13848854 -148751076 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 849 138 0 0 chrX 13849234 13849357 -148750573 + FAM SINE Alu 1 48 -1 23 54 0 0 chrX 13849708 13849745 -148750185 + AT_rich Low_complexity Low_complexity 1 37 0 724 154 0 17 chrX 13849914 13850031 -148749899 + FLAM_A SINE Alu 23 137 -5 1490 188 115 63 chrX 13851117 13851559 -148748371 - LTR29 LTR ERV1 0 622 158 3675 130 5 33 chrX 13851631 13852009 -148747921 + MER41B LTR ERV1 1 357 -278 2832 101 106 5 chrX 13852009 13852416 -148747514 - MER83 LTR ERV1 0 448 1 3675 130 5 33 chrX 13852416 13852635 -148747295 + MER41B LTR ERV1 357 581 -54 327 293 89 0 chrX 13853167 13853290 -148746640 - L3 LINE CR1 -770 807 674 427 118 0 79 chrX 13854122 13854198 -148745732 + MLT1D LTR MaLR 1 70 -435 2494 119 5 14 chrX 13854198 13854568 -148745362 + THE1C LTR MaLR 1 367 -8 444 40 0 0 chrX 13854568 13854618 -148745312 + THE1B LTR MaLR 315 364 0 11609 102 11 32 chrX 13854618 13856232 -148743698 + THE1C-int LTR MaLR 1 1580 0 2825 86 0 29 chrX 13856232 13856455 -148743475 + THE1C LTR MaLR 1 210 -165 2374 125 36 31 chrX 13856455 13856815 -148743115 - THE1B LTR MaLR -2 362 1 2825 86 0 29 chrX 13856815 13856977 -148742953 + THE1C LTR MaLR 210 375 0 404 258 57 8 chrX 13856977 13857101 -148742829 + MLT1D LTR MaLR 66 195 -310 1602 165 10 46 chrX 13857101 13857404 -148742526 + AluJo SINE Alu 1 292 -20 4982 160 7 49 chrX 13857994 13859206 -148740724 + L1MB5 LINE L1 5014 6174 0 401 327 106 52 chrX 13859227 13859594 -148740336 - L3 LINE CR1 -1050 527 141 644 167 0 0 chrX 13859727 13859829 -148740101 - FLAM_A SINE Alu -1 141 40 903 251 100 22 chrX 13859850 13860169 -148739761 + L2 LINE L2 2829 3172 -141 184 258 47 11 chrX 13860184 13860308 -148739622 + L2 LINE L2 3104 3271 -1 277 345 43 0 chrX 13860335 13860474 -148739456 - L2 LINE L2 0 3313 3169 1850 170 3 0 chrX 13860782 13861076 -148738854 + AluJb SINE Alu 1 295 -17 2021 127 3 13 chrX 13861824 13862124 -148737806 - AluSx SINE Alu -15 297 1 24 0 0 0 chrX 13862130 13862154 -148737776 + AT_rich Low_complexity Low_complexity 1 24 0 1306 106 6 0 chrX 13862178 13862348 -148737582 + AluSg/x SINE Alu 125 295 -17 359 339 122 5 chrX 13862430 13862619 -148737311 - MIR SINE MIR -15 247 37 1907 139 51 0 chrX 13862966 13863261 -148736669 + AluJb SINE Alu 1 310 -2 351 113 0 0 chrX 13863444 13863497 -148736433 + (CA)n Simple_repeat Simple_repeat 1 53 0 1410 313 78 82 chrX 13863562 13863988 -148735942 - L3 LINE CR1 -100 1477 1051 1784 145 71 0 chrX 13863988 13864271 -148735659 - AluJb SINE Alu -9 303 1 1410 313 78 82 chrX 13864271 13865139 -148734791 - L3 LINE CR1 -526 1051 186 1824 151 6 22 chrX 13865139 13865450 -148734480 - AluJb SINE Alu -6 306 1 1410 313 78 82 chrX 13865450 13865597 -148734333 - L3 LINE CR1 -1391 186 40 1745 199 8 45 chrX 13865951 13866328 -148733602 + MLT1A1 LTR MaLR 1 363 -2 1971 165 25 19 chrX 13867099 13867463 -148732467 + L1MB7 LINE L1 5819 6184 0 515 301 138 90 chrX 13867497 13868190 -148731740 + L2 LINE L2 611 1269 -2045 1383 164 124 18 chrX 13868190 13868465 -148731465 - AluJo SINE Alu -8 304 1 515 301 138 90 chrX 13868465 13868921 -148731009 + L2 LINE L2 1269 1701 -1613 1979 108 35 0 chrX 13868921 13869207 -148730723 + AluSx SINE Alu 3 298 -14 515 301 138 90 chrX 13869207 13869512 -148730418 + L2 LINE L2 1701 1990 -1324 2228 201 105 44 chrX 13869512 13870100 -148729830 - MLT1E3 LTR MaLR 0 624 1 515 301 138 90 chrX 13870100 13870605 -148729325 + L2 LINE L2 1990 2667 -647 335 322 114 41 chrX 13871166 13871552 -148728378 + L2 LINE L2 2661 3054 -218 1972 117 0 31 chrX 13872093 13872383 -148727547 - AluSq SINE Alu -32 281 1 390 272 75 49 chrX 13872676 13872841 -148727089 + MIR3 SINE MIR 1 174 -34 931 234 138 65 chrX 13873447 13873844 -148726086 - MLT1J1 LTR MaLR -15 431 6 8032 30 1 6 chrX 13874079 13875322 -148724608 + L1PA5 LINE L1 4916 6154 0 1041 133 7 0 chrX 13875558 13875709 -148724221 + MER5A DNA MER1_type 1 152 -37 197 373 0 49 chrX 13876086 13876188 -148723742 + L2 LINE L2 3176 3272 0 434 101 14 0 chrX 13876380 13876449 -148723481 + (GA)n Simple_repeat Simple_repeat 1 70 0 1203 170 14 31 chrX 13876535 13876758 -148723172 - MER20 DNA MER1_type 0 219 1 22 0 0 0 chrX 13877165 13877187 -148722743 + AT_rich Low_complexity Low_complexity 1 22 0 464 221 149 14 chrX 13877266 13877474 -148722456 - HAL1 LINE L1 -145 2362 2127 24 32 0 0 chrX 13880023 13880054 -148719876 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chrX 13880374 13880394 -148719536 + (CCG)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chrX 13880402 13880430 -148719500 + GC_rich Low_complexity Low_complexity 1 28 0 207 273 16 31 chrX 13880492 13880620 -148719310 + (CCCCG)n Simple_repeat Simple_repeat 4 129 0 216 0 0 0 chrX 13883977 13884001 -148715929 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 266 277 15 0 chrX 13884190 13884255 -148715675 - MIR SINE MIR -98 110 45 1434 145 0 40 chrX 13884494 13884742 -148715188 + AluJo SINE Alu 40 277 -35 441 323 51 37 chrX 13885003 13885297 -148714633 - L2 LINE L2 -1302 2012 1715 333 269 269 13 chrX 13885927 13886076 -148713854 + MIR3 SINE MIR 22 208 0 22 35 0 0 chrX 13886120 13886149 -148713781 + AT_rich Low_complexity Low_complexity 1 29 0 322 273 116 58 chrX 13886710 13886882 -148713048 + MIR SINE MIR 80 261 -1 187 390 124 6 chrX 13887686 13887855 -148712075 + MIR SINE MIR 4 192 -70 675 201 65 47 chrX 13888458 13888672 -148711258 + L1ME3A LINE L1 5944 6161 -9 210 143 0 0 chrX 13889562 13889597 -148710333 + (T)n Simple_repeat Simple_repeat 1 35 0 2260 107 3 0 chrX 13891543 13891843 -148708087 - AluSq SINE Alu -12 301 1 202 225 0 0 chrX 13891972 13892012 -148707918 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2256 112 13 0 chrX 13892065 13892370 -148707560 - AluSx SINE Alu -3 309 1 456 301 88 29 chrX 13892997 13893236 -148706694 - MIR SINE MIR -1 261 9 1571 184 0 35 chrX 13895329 13895617 -148704313 + AluJb SINE Alu 1 278 -34 222 118 0 0 chrX 13895621 13895655 -148704275 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 2165 128 0 0 chrX 13896069 13896373 -148703557 + AluSx SINE Alu 1 304 -8 322 128 192 0 chrX 13896493 13896571 -148703359 + MER112 DNA MER1_type 147 239 -21 23 0 0 0 chrX 13896611 13896634 -148703296 + AT_rich Low_complexity Low_complexity 1 23 0 1106 185 9 44 chrX 13896807 13897034 -148702896 + MER20 DNA MER1_type 1 219 0 2461 74 0 0 chrX 13897212 13897511 -148702419 + AluSc SINE Alu 1 299 -10 757 200 0 8 chrX 13898055 13898180 -148701750 + FLAM_A SINE Alu 1 124 -9 2015 142 0 13 chrX 13898207 13898518 -148701412 - AluJo SINE Alu -5 307 1 524 274 154 33 chrX 13898851 13899150 -148700780 + L1MC4a LINE L1 5563 5897 -1911 338 148 28 0 chrX 13899159 13899232 -148700698 - AluJb SINE Alu -168 134 87 204 286 152 19 chrX 13899331 13899436 -148700494 + L3 LINE CR1 1263 1381 -196 2135 103 3 36 chrX 13900333 13900635 -148699295 + AluSg SINE Alu 1 292 -18 369 0 0 0 chrX 13900636 13900677 -148699253 + (TA)n Simple_repeat Simple_repeat 2 42 0 1516 110 0 20 chrX 13905135 13905381 -148694549 - L1MB2 LINE L1 0 6171 5931 21 0 0 0 chrX 13905777 13905798 -148694132 + AT_rich Low_complexity Low_complexity 1 21 0 659 284 130 16 chrX 13905936 13906507 -148693423 - L1MC5 LINE L1 -50 7911 7276 408 225 218 7 chrX 13906684 13906826 -148693104 - MIR SINE MIR -8 254 83 21 0 0 0 chrX 13907076 13907097 -148692833 + AT_rich Low_complexity Low_complexity 1 21 0 185 333 0 0 chrX 13907501 13907549 -148692381 + L2 LINE L2 3209 3256 -16 24 32 0 0 chrX 13909732 13909763 -148690167 + AT_rich Low_complexity Low_complexity 1 31 0 917 164 27 0 chrX 13910738 13910884 -148689046 + FAM SINE Alu 16 165 -20 312 228 234 66 chrX 13911065 13911232 -148688698 + L1ME LINE L1 5643 5837 -284 1660 165 63 14 chrX 13911322 13911607 -148688323 + AluJo SINE Alu 1 299 -13 2205 112 3 0 chrX 13912827 13913123 -148686807 + AluSx SINE Alu 1 297 -15 1611 162 64 2 chrX 13913337 13913764 -148686166 + L1M4 LINE L1 4960 5419 -749 315 267 81 12 chrX 13914527 13914613 -148685317 + MIR SINE MIR 23 114 -94 21 0 0 0 chrX 13915426 13915447 -148684483 + AT_rich Low_complexity Low_complexity 1 21 0 1171 165 0 34 chrX 13915514 13915720 -148684210 - AluJo SINE Alu -10 302 104 1493 122 0 5 chrX 13915722 13915927 -148684003 - AluSq SINE Alu -109 204 1 48 43 0 0 chrX 13915968 13916037 -148683893 + AT_rich Low_complexity Low_complexity 1 69 0 2377 102 0 3 chrX 13916045 13916358 -148683572 + AluSq SINE Alu 1 312 -1 477 268 0 24 chrX 13916964 13917132 -148682798 + (CATATA)n Simple_repeat Simple_repeat 1 164 0 406 310 191 32 chrX 13917190 13917613 -148682317 - L1MC4a LINE L1 -365 5797 5377 180 333 69 0 chrX 13918033 13918105 -148681825 - MIR3 SINE MIR -51 157 81 23 33 0 0 chrX 13918239 13918269 -148681661 + AT_rich Low_complexity Low_complexity 1 30 0 285 306 42 88 chrX 13918689 13918996 -148680934 + L3 LINE CR1 1262 1554 -23 2297 89 0 32 chrX 13919510 13919825 -148680105 + AluSq SINE Alu 1 305 -8 245 291 48 39 chrX 13920319 13920422 -148679508 - MIR SINE MIR -100 162 59 1750 163 14 17 chrX 13920478 13920767 -148679163 - AluJo SINE Alu -21 291 4 300 290 117 31 chrX 13921674 13921836 -148678094 + MER5B DNA MER1_type 3 178 0 200 200 0 0 chrX 13922346 13922386 -148677544 + CT-rich Low_complexity Low_complexity 2 41 0 2335 57 0 0 chrX 13922888 13923208 -148676722 + AluY SINE Alu 1 320 0 2222 96 0 10 chrX 13923391 13923683 -148676247 + AluSc SINE Alu 1 289 -20 215 289 96 12 chrX 13924109 13924192 -148675738 - MER5B DNA MER1_type -1 177 88 216 148 37 0 chrX 13924192 13924246 -148675684 + (TA)n Simple_repeat Simple_repeat 2 57 0 957 112 0 0 chrX 13924257 13924382 -148675548 - AluJb SINE Alu -187 125 1 419 222 100 0 chrX 13924384 13924474 -148675456 - MER5B DNA MER1_type -79 99 1 208 250 62 0 chrX 13924835 13924883 -148675047 + L2 LINE L2 3262 3312 -1 406 293 105 0 chrX 13925017 13925198 -148674732 - MIR SINE MIR -39 223 24 677 110 0 0 chrX 13925284 13925384 -148674546 - FRAM SINE Alu -7 169 70 2495 90 3 0 chrX 13926196 13926508 -148673422 + AluSp SINE Alu 1 313 0 2259 110 0 0 chrX 13927060 13927359 -148672571 - AluJb SINE Alu -13 299 1 2347 99 0 6 chrX 13927527 13927841 -148672089 + AluSx SINE Alu 1 312 0 209 290 58 58 chrX 13928091 13928229 -148671701 + L2 LINE L2 2344 2481 -833 1076 93 0 7 chrX 13928237 13928377 -148671553 + AluSq SINE Alu 90 228 -85 1997 114 32 0 chrX 13928399 13928679 -148671251 + AluSx SINE Alu 1 289 -23 455 310 70 47 chrX 13928693 13929160 -148670770 + L2 LINE L2 2689 3126 -187 2279 101 3 3 chrX 13929160 13929467 -148670463 - AluSg SINE Alu -3 307 1 455 310 70 47 chrX 13929467 13929628 -148670302 + L2 LINE L2 3126 3282 -31 22 0 0 0 chrX 13930223 13930245 -148669685 + AT_rich Low_complexity Low_complexity 1 22 0 872 186 51 0 chrX 13930507 13930684 -148669246 + MER58A DNA MER1_type 37 222 -2 229 254 20 26 chrX 13930919 13931010 -148668920 + CT-rich Low_complexity Low_complexity 1 90 0 632 92 0 0 chrX 13931155 13931242 -148668688 - AluSp/q SINE Alu -12 301 215 2350 97 3 0 chrX 13931828 13932136 -148667794 - AluSq SINE Alu -4 309 1 2345 89 7 0 chrX 13932359 13932663 -148667267 + AluSx SINE Alu 1 306 -6 21 0 0 0 chrX 13932939 13932960 -148666970 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 13933169 13933192 -148666738 + AT_rich Low_complexity Low_complexity 1 23 0 497 268 30 42 chrX 13933417 13933585 -148666345 - MIR SINE MIR 0 262 97 2241 101 0 25 chrX 13933586 13933903 -148666027 + AluSc SINE Alu 1 309 0 254 326 87 24 chrX 13934023 13934311 -148665619 + L1ME LINE L1 5474 5779 -342 2415 93 0 6 chrX 13934630 13934941 -148664989 + AluSc SINE Alu 1 309 0 1344 99 0 0 chrX 13935492 13935663 -148664267 + AluSq SINE Alu 131 301 -12 709 267 78 38 chrX 13935678 13935914 -148664016 + L1MC4 LINE L1 7096 7321 -721 2472 64 0 3 chrX 13935914 13936211 -148663719 - AluSc SINE Alu -13 296 1 709 267 78 38 chrX 13936211 13936424 -148663506 + L1MC4 LINE L1 7321 7563 -479 603 239 35 39 chrX 13936510 13936765 -148663165 + L1MC4 LINE L1 7789 8042 0 203 216 189 0 chrX 13937065 13937139 -148662791 + MIR SINE MIR 146 233 -29 1167 175 36 8 chrX 13937351 13937602 -148662328 + Tigger2 DNA MER2_type 1 258 -2460 2461 60 3 0 chrX 13937607 13937908 -148662022 + AluSq SINE Alu 1 302 -11 2417 93 0 3 chrX 13938022 13938332 -148661598 + AluSx SINE Alu 1 309 -3 2157 110 34 133 chrX 13938457 13938922 -148661008 + Tigger2 DNA MER2_type 251 669 -2049 1351 91 0 0 chrX 13938924 13939100 -148660830 + AluSg/x SINE Alu 135 310 0 1043 105 0 0 chrX 13939133 13939276 -148660654 - AluSg SINE Alu -167 143 1 9183 118 26 27 chrX 13939276 13940831 -148659099 + Tigger2 DNA MER2_type 1166 2718 0 656 129 152 3 chrX 13940850 13941010 -148658920 + MER46A DNA MER2_type 1 236 0 2303 96 3 0 chrX 13941279 13941571 -148658359 + AluSx SINE Alu 1 293 -19 2125 127 3 7 chrX 13942671 13942978 -148656952 - AluSx SINE Alu -6 306 1 1711 132 19 68 chrX 13943011 13943155 -148656775 + AluJb SINE Alu 1 124 -188 2403 88 0 16 chrX 13943155 13943472 -148656458 + AluSx SINE Alu 1 312 0 1711 132 19 68 chrX 13943472 13943637 -148656293 + AluJb SINE Alu 124 295 -17 234 260 0 20 chrX 13943782 13943832 -148656098 - L2 LINE L2 -15 3257 3209 8087 81 3 0 chrX 13943947 13945028 -148654902 + THE1B-int LTR MaLR 497 1580 0 2205 122 48 20 chrX 13945028 13945380 -148654550 + THE1B LTR MaLR 1 362 -2 1534 90 0 14 chrX 13945381 13945603 -148654327 - THE1C LTR MaLR -156 219 1 10843 102 11 32 chrX 13945603 13947217 -148652713 - THE1C-int LTR MaLR 0 1580 1 416 40 0 0 chrX 13947217 13947267 -148652663 - THE1C LTR MaLR 0 364 315 1446 136 8 8 chrX 13947267 13947509 -148652421 - THE1C LTR MaLR -8 367 126 250 261 15 0 chrX 13997945 13998010 -148601920 + MLT1G LTR MaLR 13 78 -512 1065 213 66 35 chrX 13998043 13998409 -148601521 + L1MD3 LINE L1 7423 7799 -196 445 188 92 135 chrX 13998419 13998648 -148601282 - MER20 DNA MER1_type 0 219 1 239 179 125 0 chrX 13998649 13998705 -148601225 + L1MD3 LINE L1 7916 7978 -17 226 222 0 0 chrX 13998707 13998727 -148601203 + (TA)n Simple_repeat Simple_repeat 2 21 -34 1811 101 76 153 chrX 13998727 13998919 -148601011 + THE1C LTR MaLR 1 147 -228 1738 148 0 0 chrX 13998919 13999175 -148600755 - AluSx SINE Alu -56 256 1 1811 101 76 153 chrX 13999175 13999388 -148600542 + THE1C LTR MaLR 147 375 0 226 222 0 0 chrX 13999388 13999421 -148600509 + (TA)n Simple_repeat Simple_repeat 20 55 0 1930 142 10 27 chrX 13999602 13999897 -148600033 + AluJo SINE Alu 2 291 -21 229 167 0 0 chrX 13999978 14000014 -148599916 - tRNA-Arg-AGA tRNA tRNA -40 36 1 1928 163 0 3 chrX 14002743 14003056 -148596874 - AluSx SINE Alu 0 312 1 321 242 40 94 chrX 14003730 14003879 -148596051 + L2 LINE L2 3108 3248 -65 44 114 0 0 chrX 14004014 14004233 -148595697 + AT_rich Low_complexity Low_complexity 1 219 0 770 236 94 15 chrX 14004325 14004387 -148595543 + MER20 DNA MER1_type 1 57 -162 2094 119 0 10 chrX 14004387 14004690 -148595240 - AluSx SINE Alu 0 312 13 770 236 94 15 chrX 14004690 14004830 -148595100 + MER20 DNA MER1_type 57 219 0 1859 156 19 7 chrX 14004847 14005155 -148594775 - AluSx SINE Alu 0 312 1 389 259 132 38 chrX 14005155 14005526 -148594404 - L1M2 LINE L1 -369 5797 5401 566 200 67 67 chrX 14005703 14005868 -148594062 + MER20 DNA MER1_type 1 165 -54 231 153 68 17 chrX 14005898 14005957 -148593973 + MER20 DNA MER1_type 158 219 0 312 261 90 145 chrX 14006339 14007061 -148592869 - L1M2 LINE L1 -5389 1460 718 542 185 0 144 chrX 14008684 14008830 -148591100 + MER20 DNA MER1_type 1 125 -94 1088 229 75 20 chrX 14008874 14009232 -148590698 - LTR37A LTR ERV1 -4 422 45 1046 208 141 30 chrX 14010291 14010661 -148589269 - L1M4 LINE L1 -2787 3359 2949 192 77 0 0 chrX 14010963 14010989 -148588941 + (GA)n Simple_repeat Simple_repeat 1 26 0 195 297 30 89 chrX 14011149 14011250 -148588680 + L3b LINE CR1 1211 1305 -278 1763 102 105 63 chrX 14011288 14011399 -148588531 + AluJb SINE Alu 1 106 -206 2270 104 7 0 chrX 14011399 14011698 -148588232 + AluSx SINE Alu 1 301 -11 2299 93 0 28 chrX 14011698 14012019 -148587911 + AluSq SINE Alu 1 312 -1 1763 102 105 63 chrX 14012019 14012191 -148587739 + AluJb SINE Alu 105 297 -15 505 133 0 56 chrX 14012716 14012806 -148587124 + L1PB4 LINE L1 6059 6143 -13 23 0 0 0 chrX 14013026 14013049 -148586881 + AT_rich Low_complexity Low_complexity 1 23 0 2297 99 7 3 chrX 14013417 14013721 -148586209 - AluSx SINE Alu -7 305 1 597 291 57 0 chrX 14013784 14013942 -148585988 - MER20 DNA MER1_type 0 219 53 22 0 0 0 chrX 14014599 14014621 -148585309 + AT_rich Low_complexity Low_complexity 1 22 0 1875 149 14 3 chrX 14015056 14015352 -148584578 + AluJb SINE Alu 1 299 -13 2743 195 18 35 chrX 14015421 14015985 -148583945 + MLT2B3 LTR ERVL 1 554 0 1807 93 135 0 chrX 14016891 14017150 -148582780 + AluSg SINE Alu 1 294 -16 2369 102 0 3 chrX 14017460 14017773 -148582157 - AluSx SINE Alu 0 312 1 989 191 29 12 chrX 14017908 14018081 -148581849 + MER45A DNA AcHobo 3 178 0 188 215 140 84 chrX 14018338 14018387 -148581543 + L2 LINE L2 3143 3188 -84 1251 238 100 6 chrX 14018387 14018698 -148581232 - MER58B DNA MER1_type -1 340 1 188 215 140 84 chrX 14018698 14018755 -148581175 + L2 LINE L2 3188 3255 -17 2376 151 20 20 chrX 14019713 14020103 -148579827 - MLT1B LTR MaLR 0 390 1 314 266 85 62 chrX 14020465 14020642 -148579288 + L2 LINE L2 2915 3095 -218 1745 187 3 10 chrX 14021174 14021474 -148578456 - AluJo SINE Alu -14 298 1 425 194 112 0 chrX 14022550 14022648 -148577282 + L1ME LINE L1 5599 5707 -463 216 182 0 0 chrX 14022668 14022701 -148577229 + MIR SINE MIR 219 251 -11 513 181 85 0 chrX 14023106 14023200 -148576730 + MER3 DNA MER1_type 1 102 -107 21 0 0 0 chrX 14023536 14023557 -148576373 + AT_rich Low_complexity Low_complexity 1 21 0 1701 102 146 0 chrX 14023673 14023927 -148576003 + AluSq SINE Alu 1 291 -22 315 71 0 0 chrX 14023929 14023971 -148575959 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 1452 85 0 0 chrX 14024538 14024715 -148575215 + L1PA15 LINE L1 5985 6161 -4 1615 161 12 56 chrX 14025729 14026052 -148573878 - AluJo SINE Alu 0 312 4 31 0 0 0 chrX 14026135 14026166 -148573764 + AT_rich Low_complexity Low_complexity 1 31 0 346 305 118 38 chrX 14026169 14026569 -148573361 - L1MC/D LINE L1 -2094 5714 5283 2180 98 20 0 chrX 14026602 14026898 -148573032 - AluSx SINE Alu -10 302 1 490 298 88 63 chrX 14026985 14027509 -148572421 - L1MC/D LINE L1 -1924 4222 3686 323 254 121 51 chrX 14027905 14028294 -148571636 - L1MC/D LINE L1 -2898 3248 2833 1089 118 51 41 chrX 14028491 14028686 -148571244 - L1PA16 LINE L1 -2 6164 5968 2143 131 0 0 chrX 14029264 14029561 -148570369 - AluSx SINE Alu -5 307 11 1323 127 18 57 chrX 14030575 14030803 -148569127 + MER20 DNA MER1_type 1 219 0 2200 103 7 10 chrX 14030846 14031148 -148568782 + AluSx SINE Alu 1 301 -11 201 74 0 0 chrX 14031551 14031578 -148568352 + (T)n Simple_repeat Simple_repeat 1 27 0 253 111 0 0 chrX 14031578 14031614 -148568316 - AluSx SINE Alu -272 36 1 1092 122 43 16 chrX 14031973 14032161 -148567769 - L1MA4 LINE L1 0 6300 6108 1939 154 0 26 chrX 14032161 14032467 -148567463 + AluSx SINE Alu 1 298 -14 235 216 0 0 chrX 14032468 14032519 -148567411 + L1MC4 LINE L1 6652 6702 -1340 * 300 75 0 0 chrX 14032514 14032554 -148567376 - L1MA4 LINE L1 -178 6122 6083 370 270 133 5 chrX 14032554 14032750 -148567180 - L1ME LINE L1 -508 5613 5393 4313 86 9 0 chrX 14032764 14033308 -148566622 - L1PA15 LINE L1 -1 6164 5616 1816 106 33 4 chrX 14033499 14033774 -148566156 - L1PA15 LINE L1 -573 5592 5310 1908 155 9 0 chrX 14033895 14034212 -148565718 - L1 LINE L1 -1280 4866 4547 738 109 0 0 chrX 14034215 14034316 -148565614 - L1PA15 LINE L1 -19 6146 6046 184 306 113 0 chrX 14034608 14034670 -148565260 + L2 LINE L2 3137 3205 -67 1316 181 4 0 chrX 14034915 14035141 -148564789 - AluJb SINE Alu -1 311 85 2284 99 16 3 chrX 14035722 14036026 -148563904 + AluSx SINE Alu 1 308 -4 619 273 12 6 chrX 14036319 14036480 -148563450 - MER117 DNA MER1_type -30 167 6 4564 62 50 27 chrX 14036531 14037125 -148562805 - LTR14B LTR ERVK 0 608 1 1947 129 0 11 chrX 14037399 14037686 -148562244 + AluSx SINE Alu 1 284 -28 2383 99 3 3 chrX 14038509 14038822 -148561108 + AluSq SINE Alu 1 313 0 592 301 74 5 chrX 14039024 14039227 -148560703 - L2 LINE L2 -2 3311 3095 2136 98 7 0 chrX 14039255 14039559 -148560371 - AluSx SINE Alu 0 311 6 277 303 174 7 chrX 14039562 14039717 -148560213 + MER5A DNA MER1_type 9 189 0 * 581 310 83 31 chrX 14039717 14039918 -148560012 - L2 LINE L2 -244 3069 2857 2131 106 3 0 chrX 14039969 14040275 -148559655 - AluSp SINE Alu 0 307 1 655 247 37 0 chrX 14040365 14040527 -148559403 - MER117 DNA MER1_type -26 171 4 1769 164 35 3 chrX 14040622 14040909 -148559021 - AluJb SINE Alu -16 296 1 2532 69 7 0 chrX 14041093 14041397 -148558533 + AluSq SINE Alu 1 306 -7 2510 76 3 9 chrX 14041397 14041712 -148558218 + AluSp SINE Alu 1 313 0 223 325 44 18 chrX 14045987 14046101 -148553829 + L2 LINE L2 2229 2345 -969 1888 129 13 26 chrX 14046108 14046410 -148553520 + AluSx SINE Alu 1 298 -14 2108 119 3 7 chrX 14046510 14046805 -148553125 - AluSx SINE Alu -18 294 1 204 40 0 0 chrX 14046828 14046853 -148553077 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1170 153 22 40 chrX 14046905 14047128 -148552802 + MER20 DNA MER1_type 1 219 0 751 161 0 27 chrX 14047465 14047614 -148552316 + L1PA16 LINE L1 6022 6166 0 21 0 0 0 chrX 14047848 14047869 -148552061 + AT_rich Low_complexity Low_complexity 1 21 0 2445 85 0 16 chrX 14048737 14049054 -148550876 + AluSx SINE Alu 1 312 0 2137 169 11 6 chrX 14049180 14049534 -148550396 - MLT1A1 LTR MaLR 0 365 10 221 347 60 41 chrX 14049566 14049883 -148550047 + L2 LINE L2 2881 3203 -110 1814 188 5 52 chrX 14049946 14049982 -148549948 + MLT1A1 LTR MaLR 1 37 -328 2072 141 0 6 chrX 14049982 14050294 -148549636 + AluSx SINE Alu 1 310 -2 1814 188 5 52 chrX 14050294 14050640 -148549290 + MLT1A1 LTR MaLR 37 365 0 2064 74 0 119 chrX 14051067 14051267 -148548663 - AluSg SINE Alu -4 296 150 2249 85 0 24 chrX 14051267 14051562 -148548368 - AluSc SINE Alu -21 288 1 2064 74 0 119 chrX 14051562 14051697 -148548233 - AluSg SINE Alu -150 150 1 2411 70 0 3 chrX 14051719 14052018 -148547912 - AluY SINE Alu -13 298 1 957 127 0 0 chrX 14052036 14052162 -148547768 - FLAM_C SINE Alu -17 126 1 882 198 13 17 chrX 14052763 14052995 -148546935 + MER33 DNA MER1_type 56 286 -38 865 153 0 0 chrX 14053000 14053137 -148546793 - FLAM_C SINE Alu -6 137 1 235 156 0 44 chrX 14053789 14053834 -148546096 + MER3 DNA MER1_type 5 47 -162 242 111 0 111 chrX 14053860 14053914 -148546016 + MER3 DNA MER1_type 145 192 -17 6126 98 29 30 chrX 14054548 14054866 -148545064 + MER4D LTR ERV1 1 318 -585 2264 114 0 3 chrX 14054866 14055164 -148544766 - AluSq SINE Alu -16 297 1 6126 98 29 30 chrX 14055164 14055556 -148544374 + MER4D LTR ERV1 318 712 -191 4934 115 39 31 chrX 14055556 14056052 -148543878 - MER4E LTR ERV1 0 779 273 2536 58 0 0 chrX 14056052 14056347 -148543583 - AluY SINE Alu -16 295 1 4934 115 39 31 chrX 14056347 14056623 -148543307 - MER4E LTR ERV1 -506 273 1 6126 98 29 30 chrX 14056623 14056815 -148543115 + MER4D LTR ERV1 712 903 0 854 220 22 0 chrX 14057774 14057956 -148541974 + MER20 DNA MER1_type 34 219 0 302 214 0 0 chrX 14058533 14058589 -148541341 - FAM SINE Alu 0 179 124 250 45 45 0 chrX 14059263 14059307 -148540623 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 347 130 0 0 chrX 14059884 14059938 -148539992 - AluSq/x SINE Alu -164 139 86 980 159 12 147 chrX 14059940 14060192 -148539738 - AluJo SINE Alu -94 218 1 3543 127 9 71 chrX 14060360 14061012 -148538918 + LTR9 LTR ERV1 1 612 0 486 219 22 87 chrX 14061153 14061336 -148538594 - L1MC5 LINE L1 -51 7910 7740 1109 164 53 40 chrX 14061381 14061550 -148538380 + LTR8A LTR ERV1 499 673 -54 3402 144 33 76 chrX 14061550 14062272 -148537658 + LTR8 LTR ERV1 1 691 0 1109 164 53 40 chrX 14062272 14062328 -148537602 + LTR8A LTR ERV1 673 727 0 2085 76 0 36 chrX 14062446 14062723 -148537207 + AluSc SINE Alu 1 267 -42 1542 168 43 20 chrX 14063275 14063578 -148536352 - L1MB4 LINE L1 -6 6174 5865 2538 74 3 0 chrX 14063602 14063912 -148536018 - AluSx SINE Alu -1 311 1 1559 267 61 55 chrX 14065280 14065800 -148534130 - L2 LINE L2 -15 3298 2782 934 195 18 53 chrX 14065800 14066026 -148533904 - MER20 DNA MER1_type -1 218 1 1559 267 61 55 chrX 14066026 14066121 -148533809 - L2 LINE L2 -531 2782 2689 2163 100 0 47 chrX 14066121 14066441 -148533489 + AluSx SINE Alu 1 305 -7 1559 267 61 55 chrX 14066441 14066790 -148533140 - L2 LINE L2 -624 2689 2328 2064 85 34 30 chrX 14067024 14067319 -148532611 + AluSg1 SINE Alu 1 296 -13 2568 62 0 3 chrX 14069560 14069865 -148530065 - AluSq SINE Alu -9 304 1 990 201 39 0 chrX 14070171 14070375 -148529555 + MER20 DNA MER1_type 1 212 -7 666 182 133 27 chrX 14070375 14070687 -148529243 - L1MD3 LINE L1 -80 7915 7448 241 228 38 13 chrX 14070703 14070782 -148529148 - L1MB4 LINE L1 -2091 5717 5637 552 294 81 22 chrX 14070918 14071190 -148528740 - L1MB4 LINE L1 -2266 5542 5255 392 250 0 0 chrX 14071194 14071282 -148528648 + L2 LINE L2 3225 3312 -1 428 299 112 43 chrX 14071287 14072221 -148527709 - L1MB4 LINE L1 -913 5233 4235 447 265 64 80 chrX 14072366 14072740 -148527190 - L1MB4 LINE L1 -2157 3989 3622 5553 106 50 1 chrX 14073861 14074683 -148525247 + L1PA16 LINE L1 5304 6165 -1 217 287 43 21 chrX 14074731 14074825 -148525105 + GA-rich Low_complexity Low_complexity 1 96 0 2369 202 39 22 chrX 14075791 14076325 -148523605 + MER74A LTR ERVL 4 546 -12 418 231 26 26 chrX 14076440 14076557 -148523373 + MIR SINE MIR 53 169 -93 2247 102 0 13 chrX 14076689 14076993 -148522937 - AluSx SINE Alu -12 300 1 1703 148 46 24 chrX 14077065 14077404 -148522526 - Charlie5 DNA MER1_type -11 2613 2264 2274 114 7 0 chrX 14077404 14077712 -148522218 - AluSx SINE Alu -2 310 1 1703 148 46 24 chrX 14077712 14077744 -148522186 - Charlie5 DNA MER1_type -360 2264 2234 549 222 43 0 chrX 14077752 14077869 -148522061 - MER3 DNA MER1_type -87 122 48 2029 136 7 13 chrX 14078528 14078837 -148521093 + AluSx SINE Alu 1 307 -5 1541 188 38 7 chrX 14078922 14079210 -148520720 + AluJo SINE Alu 2 298 -14 2189 149 60 56 chrX 14079292 14079477 -148520453 + MSTB1 LTR MaLR 1 184 -248 1748 157 0 58 chrX 14079477 14079790 -148520140 - AluJo SINE Alu -17 295 1 2189 149 60 56 chrX 14079790 14080034 -148519896 + MSTB1 LTR MaLR 184 432 0 280 340 98 67 chrX 14080518 14080833 -148519097 + L2 LINE L2 2932 3256 -16 2884 142 57 29 chrX 14081226 14081554 -148518376 + L1MB3 LINE L1 5618 5935 -248 2301 110 0 0 chrX 14081554 14081853 -148518077 + AluSx SINE Alu 1 299 -13 180 0 0 0 chrX 14081853 14081873 -148518057 + (CAAG)n Simple_repeat Simple_repeat 2 21 0 2884 142 57 29 chrX 14081873 14082087 -148517843 + L1MB3 LINE L1 5934 6176 -7 1041 171 28 19 chrX 14083701 14083912 -148516018 + MER20 DNA MER1_type 1 213 -6 518 184 123 9 chrX 14084020 14084134 -148515796 - L1PA16 LINE L1 -9 6157 6031 1286 195 27 4 chrX 14085920 14086182 -148513748 + MER33 DNA MER1_type 57 324 0 578 46 46 0 chrX 14086683 14086770 -148513160 + L1PA13 LINE L1 6072 6162 -1 2058 102 3 14 chrX 14087214 14087509 -148512421 - AluSc SINE Alu -17 292 1 1745 92 39 4 chrX 14087961 14088190 -148511740 - AluSx SINE Alu -75 237 1 631 229 93 24 chrX 14089129 14089334 -148510596 + MER20 DNA MER1_type 1 219 0 692 168 58 7 chrX 14091805 14091942 -148507988 - MLT1C LTR MaLR -22 445 302 1706 129 19 4 chrX 14091948 14092204 -148507726 + MLT2D LTR ERVL 4 263 -151 1703 138 52 128 chrX 14092229 14092650 -148507280 + MSTD LTR MaLR 8 396 0 596 136 100 0 chrX 14092651 14092761 -148507169 + MLT2D LTR ERVL 254 374 -40 387 160 0 0 chrX 14092761 14092836 -148507094 + (CA)n Simple_repeat Simple_repeat 2 76 0 278 91 68 0 chrX 14092836 14092880 -148507050 + MLT2D LTR ERVL 366 412 -2 877 169 156 38 chrX 14092897 14093134 -148506796 - MLT1C LTR MaLR -202 265 1 198 0 0 0 chrX 14096942 14096964 -148502966 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chrX 14097919 14097940 -148501990 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chrX 14099198 14099238 -148500692 + (TG)n Simple_repeat Simple_repeat 1 40 0 206 278 97 0 chrX 14099924 14099996 -148499934 + L2 LINE L2 3171 3249 -64 531 0 0 0 chrX 14100146 14100205 -148499725 + (CA)n Simple_repeat Simple_repeat 1 59 0 758 170 7 14 chrX 14100307 14100448 -148499482 - MER20 DNA MER1_type -79 140 1 387 0 0 0 chrX 14100733 14100776 -148499154 + (TG)n Simple_repeat Simple_repeat 2 44 0 2086 140 0 10 chrX 14100776 14101090 -148498840 - AluJb SINE Alu 0 312 2 321 256 237 9 chrX 14102465 14102684 -148497246 + L1 LINE L1 3687 3955 -2191 822 139 0 28 chrX 14103235 14103379 -148496551 + FRAM SINE Alu 34 173 -3 383 256 51 88 chrX 14103383 14103598 -148496332 + L1ME4a LINE L1 5871 6077 -44 2200 81 0 3 chrX 14103812 14104129 -148495801 - AluSg SINE Alu 0 316 1 1786 92 8 8 chrX 14104834 14105094 -148494836 - L1PA15 LINE L1 -7 6158 5899 744 186 133 21 chrX 14105351 14105539 -148494391 - MER3 DNA MER1_type 0 209 1 1019 109 0 0 chrX 14105619 14105766 -148494164 - L1PA15 LINE L1 -34 6131 5985 916 256 4 53 chrX 14107509 14107775 -148492155 - MIR SINE MIR -1 261 9 650 313 102 68 chrX 14107805 14109211 -148490719 - L2 LINE L2 -43 3229 1016 369 248 62 0 chrX 14109335 14109448 -148490482 - L1ME LINE L1 -452 5710 5591 1822 140 21 11 chrX 14110240 14110558 -148489372 - AluJb SINE Alu 0 321 1 375 213 0 0 chrX 14110673 14110748 -148489182 + FLAM SINE Alu 43 117 -16 244 304 115 58 chrX 14110938 14111129 -148488801 + L2 LINE L2 2748 2949 -365 1838 124 73 88 chrX 14111158 14111554 -148488376 - MLT1B LTR MaLR 0 390 1 294 29 0 0 chrX 14111858 14111893 -148488037 + (TG)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chrX 14112351 14112375 -148487555 + (TA)n Simple_repeat Simple_repeat 1 24 0 29 28 0 0 chrX 14113214 14113250 -148486680 + AT_rich Low_complexity Low_complexity 1 36 0 2017 114 27 30 chrX 14113786 14114084 -148485846 + AluJb SINE Alu 1 297 -15 294 85 0 0 chrX 14114107 14114154 -148485776 - MADE1 DNA Mariner -3 77 31 203 250 191 12 chrX 14114757 14114841 -148485089 - L3 LINE CR1 -80 1497 1399 182 229 0 0 chrX 14116240 14116275 -148483655 - L2 LINE L2 -17 3255 3221 207 244 0 0 chrX 14117544 14117622 -148482308 + GA-rich Low_complexity Low_complexity 3 80 0 203 182 0 23 chrX 14117724 14117768 -148482162 + A-rich Low_complexity Low_complexity 4 46 0 2127 113 7 0 chrX 14117984 14118284 -148481646 - AluSx SINE Alu -9 303 2 183 42 0 0 chrX 14118460 14118484 -148481446 + (CAA)n Simple_repeat Simple_repeat 1 24 0 186 321 170 0 chrX 14119775 14119881 -148480049 + L2 LINE L2 3148 3271 -1 478 205 253 6 chrX 14120837 14120884 -148479046 - L1MD3 LINE L1 -34 7961 7927 966 142 69 64 chrX 14120884 14121102 -148478828 + MER20 DNA MER1_type 1 219 0 478 205 253 6 chrX 14121102 14121220 -148478710 - L1MD3 LINE L1 -68 7927 7755 372 137 14 0 chrX 14121222 14121295 -148478635 - L1MC4a LINE L1 -260 7548 7475 183 409 9 36 chrX 14121531 14121641 -148478289 - MIR3 SINE MIR -90 118 12 369 212 103 20 chrX 14121885 14122031 -148477899 + L2 LINE L2 3091 3248 -65 2308 91 3 0 chrX 14122258 14122555 -148477375 - AluSg SINE Alu -12 298 1 22 35 0 0 chrX 14122558 14122587 -148477343 + AT_rich Low_complexity Low_complexity 1 29 0 772 227 89 10 chrX 14122596 14122799 -148477131 + MER20 DNA MER1_type 1 219 0 328 191 66 24 chrX 14122803 14122950 -148476980 - L1M2 LINE L1 -368 5786 5681 229 296 72 26 chrX 14123012 14123164 -148476766 - L1ME LINE L1 -596 5570 5412 507 200 67 67 chrX 14123354 14123519 -148476411 + MER20 DNA MER1_type 1 165 -54 204 125 0 0 chrX 14123523 14123555 -148476375 + (CCCCCT)n Simple_repeat Simple_repeat 3 34 0 351 274 98 115 chrX 14123783 14124722 -148475208 - L1M2 LINE L1 -5389 1460 315 499 192 0 144 chrX 14126334 14126480 -148473450 + MER20 DNA MER1_type 1 125 -94 930 237 70 14 chrX 14126524 14126882 -148473048 - LTR37A LTR ERV1 -4 422 45 1871 149 10 32 chrX 14127966 14128275 -148471655 - AluJo SINE Alu -10 302 1 487 276 30 8 chrX 14128296 14128430 -148471500 - MIR SINE MIR -106 156 20 574 224 0 0 chrX 14129242 14129367 -148470563 + MER33 DNA MER1_type 6 130 -194 825 142 149 0 chrX 14129377 14129408 -148470522 + AluJo SINE Alu 85 110 -202 369 0 0 0 chrX 14129408 14129449 -148470481 + (CA)n Simple_repeat Simple_repeat 2 42 0 825 142 149 0 chrX 14129449 14129551 -148470379 + AluJo SINE Alu 110 238 -74 189 0 0 0 chrX 14129564 14129585 -148470345 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 541 189 98 0 chrX 14129597 14129750 -148470180 + MER33 DNA MER1_type 196 363 0 477 310 60 74 chrX 14130065 14130349 -148469581 + L2 LINE L2 2992 3271 -1 2203 179 22 43 chrX 14130539 14131030 -148468900 - MER66B LTR ERV1 -5 481 1 503 259 108 38 chrX 14132056 14132214 -148467716 + MER5A DNA MER1_type 16 184 -5 267 281 0 0 chrX 14133040 14133097 -148466833 + MIR SINE MIR 1 57 -205 399 205 36 0 chrX 14133298 14133381 -148466549 + MIR SINE MIR 177 262 0 533 320 117 5 chrX 14134132 14134338 -148465592 + MIR SINE MIR 34 262 0 472 154 45 0 chrX 14134502 14134612 -148465318 - L1MA9 LINE L1 -10 6302 6188 4074 117 69 2 chrX 14134625 14135679 -148464251 - L1MA8 LINE L1 -377 5914 4766 250 125 167 0 chrX 14135750 14135798 -148464132 + MER63 DNA MER1_type 27 708 -354 228 83 83 0 chrX 14135819 14135855 -148464075 + MER63 DNA MER1_type 668 706 -354 272 229 29 0 chrX 14135918 14135988 -148463942 + MER63 DNA MER1_type 990 1061 -1 2487 17 0 7 chrX 14136106 14136429 -148463501 - L1PA2 LINE L1 0 6155 5866 416 88 44 0 chrX 14136576 14136644 -148463286 + (ATGGTG)n Simple_repeat Simple_repeat 4 74 0 284 295 32 21 chrX 14136662 14136757 -148463173 + MIR3 SINE MIR 9 104 -104 192 373 20 29 chrX 14137139 14137241 -148462689 - L2 LINE L2 -20 3293 3193 226 322 61 19 chrX 14137592 14137726 -148462204 + MIR3 SINE MIR 8 149 -67 262 105 0 0 chrX 14137731 14137769 -148462161 + tRNA-Ser-TCA tRNA tRNA 1 38 -47 199 382 59 0 chrX 14137769 14137871 -148462059 + MIR SINE MIR 139 246 -16 374 286 71 18 chrX 14137901 14138013 -148461917 - MIR SINE MIR -143 119 2 2337 77 27 3 chrX 14138179 14138476 -148461454 - AluY SINE Alu -7 304 1 2239 85 0 0 chrX 14138486 14138789 -148461141 - AluSx SINE Alu 0 304 2 492 18 0 0 chrX 14140669 14140726 -148459204 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 266 153 17 0 chrX 14140825 14140884 -148459046 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 357 293 43 0 chrX 14140918 14141058 -148458872 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 777 244 131 47 chrX 14141079 14141506 -148458424 - L1MC4 LINE L1 -486 7556 7094 327 22 0 0 chrX 14141536 14141581 -148458349 + L1MA9 LINE L1 6262 6306 -6 332 0 0 0 chrX 14141656 14141697 -148458233 - L1PA6 LINE L1 -4 6150 6110 210 226 38 0 chrX 14142637 14142690 -148457240 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 2055 219 72 53 chrX 14144174 14144456 -148455474 + MLT1E LTR MaLR 1 276 -317 1149 111 162 0 chrX 14144456 14144654 -148455276 + MER30 DNA MER1_type 1 230 0 2055 219 72 53 chrX 14144654 14144951 -148454979 + MLT1E LTR MaLR 276 591 -2 622 287 71 19 chrX 14144952 14145220 -148454710 - LTR16A LTR ERVL -110 340 59 474 159 80 35 chrX 14145654 14145767 -148454163 - ORSL DNA AcHobo -157 118 1 3425 24 2 7 chrX 14146009 14146420 -148453510 - L1PA4 LINE L1 0 6155 5747 204 233 0 0 chrX 14146464 14146507 -148453423 - L2 LINE L2 -79 3193 3151 633 180 108 41 chrX 14146911 14146976 -148452954 + MER106A DNA MER1_type 30 89 -147 2601 141 21 2 chrX 14146976 14147396 -148452534 - MSTA LTR MaLR 0 428 1 633 180 108 41 chrX 14147396 14147524 -148452406 + MER106A DNA MER1_type 89 236 0 23 86 0 0 chrX 14148510 14148568 -148451362 + AT_rich Low_complexity Low_complexity 1 58 0 229 193 35 0 chrX 14149328 14149385 -148450545 + MER116 DNA Mariner 3 61 -19 238 347 44 48 chrX 14149819 14150067 -148449863 + L2 LINE L2 1824 2070 -1244 571 198 141 93 chrX 14150373 14150621 -148449309 + MER46C DNA MER2_type 5 264 -74 194 365 0 0 chrX 14150628 14150680 -148449250 + MIR SINE MIR 49 100 -108 228 318 35 0 chrX 14152426 14152511 -148447419 - MIR SINE MIR -95 167 80 2077 140 68 51 chrX 14152630 14153045 -148446885 + MSTB LTR MaLR 1 422 -4 2340 105 0 6 chrX 14153396 14153711 -148446219 - AluSq SINE Alu 0 313 1 454 270 74 7 chrX 14153844 14153992 -148445938 + L2 LINE L2 2700 2857 -457 427 382 77 0 chrX 14154311 14154557 -148445373 - L3b LINE CR1 -52 1531 1267 202 264 305 11 chrX 14154693 14154867 -148445063 + MIR SINE MIR 34 258 -4 2532 93 0 0 chrX 14154938 14155250 -148444680 - AluSx SINE Alu 0 312 1 933 177 141 0 chrX 14155467 14155659 -148444271 - MER20 DNA MER1_type 0 219 1 921 246 85 0 chrX 14156009 14156233 -148443697 + MIR SINE MIR 20 262 0 24 0 0 0 chrX 14158588 14158612 -148441318 + AT_rich Low_complexity Low_complexity 1 24 0 2209 104 0 0 chrX 14158915 14159204 -148440726 - AluSx SINE Alu -21 291 3 763 156 19 99 chrX 14159569 14159780 -148440150 - L2 LINE L2 -8 3305 3112 7074 55 10 25 chrX 14160666 14161697 -148438233 - L1PA8 LINE L1 0 6172 5150 2435 84 0 10 chrX 14161697 14162006 -148437924 + AluSq SINE Alu 1 306 -7 7074 55 10 25 chrX 14162006 14162342 -148437588 - L1PA8 LINE L1 -1022 5150 4811 2211 260 60 20 chrX 14162499 14162969 -148436961 + L2 LINE L2 2205 2704 -610 2095 135 0 6 chrX 14162969 14163280 -148436650 - AluJb SINE Alu -3 309 1 2211 260 60 20 chrX 14163280 14163393 -148436537 + L2 LINE L2 2704 2811 -503 4442 84 0 5 chrX 14163625 14164219 -148435711 - LTR10C LTR ERV1 0 591 1 246 363 113 12 chrX 14165659 14165827 -148434103 - L3 LINE CR1 -10 1567 1383 421 257 125 35 chrX 14165835 14165979 -148433951 - MIR SINE MIR -41 221 65 365 284 205 5 chrX 14165992 14166182 -148433748 - L3 LINE CR1 -287 1290 1063 1084 253 177 25 chrX 14166308 14166923 -148433007 + L2 LINE L2 2602 3304 -9 181 344 100 69 chrX 14167020 14167213 -148432717 - L3 LINE CR1 -1105 472 262 2480 51 0 3 chrX 14167213 14167508 -148432422 + AluY SINE Alu 1 294 -17 181 344 100 69 chrX 14167508 14167663 -148432267 - L3 LINE CR1 -1315 262 113 543 313 78 5 chrX 14168512 14168704 -148431226 + MIR SINE MIR 15 220 -42 205 328 0 0 chrX 14168974 14169032 -148430898 + L3 LINE CR1 1519 1576 -1 2490 73 0 0 chrX 14169301 14169604 -148430326 + AluY SINE Alu 1 303 -8 212 0 0 35 chrX 14170893 14170922 -148429008 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 686 146 36 0 chrX 14171374 14171484 -148428446 - AluJ SINE Alu -16 296 183 846 156 0 0 chrX 14171491 14171619 -148428311 - AluJ SINE Alu -174 128 1 23 33 0 0 chrX 14171964 14171994 -148427936 + AT_rich Low_complexity Low_complexity 1 30 0 706 264 52 0 chrX 14173465 14173639 -148426291 + MIR SINE MIR 5 187 -75 2019 152 3 3 chrX 14173691 14173993 -148425937 - AluJb SINE Alu -10 302 1 255 272 74 0 chrX 14174069 14174150 -148425780 + L2 LINE L2 2716 2802 -512 1139 204 52 23 chrX 14174183 14174683 -148425247 - MLT1E LTR MaLR 0 593 1 227 283 43 33 chrX 14174725 14174817 -148425113 + MIR SINE MIR 104 196 -66 33 43 0 0 chrX 14175085 14175132 -148424798 + AT_rich Low_complexity Low_complexity 1 47 0 680 259 0 12 chrX 14175132 14175298 -148424632 - MIR SINE MIR -3 259 96 183 42 0 0 chrX 14175884 14175908 -148424022 + (GA)n Simple_repeat Simple_repeat 2 25 0 352 302 48 0 chrX 14176382 14176508 -148423422 + MER94 DNA DNA 1 132 -2 982 158 82 0 chrX 14176569 14176752 -148423178 + MER20 DNA MER1_type 1 198 -21 937 212 18 40 chrX 14176749 14176971 -148422959 - MER58A DNA MER1_type -7 217 1 * 393 315 151 25 chrX 14177029 14177267 -148422663 - L3 LINE CR1 -857 720 453 402 241 0 46 chrX 14177286 14177373 -148422557 - MER5B DNA MER1_type -95 83 1 192 291 161 31 chrX 14177373 14177586 -148422344 - L2 LINE L2 -385 2929 2688 422 169 11 0 chrX 14177672 14177761 -148422169 + CT-rich Low_complexity Low_complexity 3 92 0 471 188 86 26 chrX 14177829 14177946 -148421984 - MER5C DNA MER1_type -200 124 1 230 383 87 15 chrX 14177974 14178297 -148421633 + L2 LINE L2 2765 3109 -163 24 0 0 0 chrX 14180204 14180228 -148419702 + AT_rich Low_complexity Low_complexity 1 24 0 315 312 65 0 chrX 14180475 14180568 -148419362 + MIR SINE MIR 21 119 -89 3343 192 12 12 chrX 14180574 14181313 -148418617 + L1MA9 LINE L1 5536 6274 -38 314 260 130 0 chrX 14181346 14181446 -148418484 + MIR SINE MIR 132 244 -18 201 254 134 0 chrX 14181855 14181922 -148418008 - MIR3 SINE MIR -3 205 130 1790 198 78 19 chrX 14182302 14182766 -148417164 + L1ME1 LINE L1 5299 5789 -395 530 249 75 6 chrX 14182771 14182944 -148416986 + L1ME1 LINE L1 5981 6165 -1 1036 287 78 112 chrX 14184021 14184805 -148415125 - L3 LINE CR1 -26 1551 795 2007 107 19 0 chrX 14184829 14185100 -148414830 - AluSx SINE Alu -18 294 19 4090 221 51 15 chrX 14186093 14187353 -148412577 + L1PA15-16 LINE L1 2731 4034 -2815 687 160 15 0 chrX 14187353 14187484 -148412446 + L1PA16 LINE L1 6025 6157 -9 2305 80 0 36 chrX 14187504 14187806 -148412124 + AluSg SINE Alu 1 291 -19 314 230 81 0 chrX 14188223 14188297 -148411633 - MIR SINE MIR -99 163 84 4105 87 10 3 chrX 14188309 14188908 -148411022 - L1MA2 LINE L1 -237 6067 5465 448 277 133 4 chrX 14188908 14189179 -148410751 - L1ME4a LINE L1 -281 5840 5535 2094 135 39 27 chrX 14189231 14189645 -148410285 - L1MA7 LINE L1 0 6291 5873 406 276 54 23 chrX 14190550 14190688 -148409242 + MIR SINE MIR 17 175 -66 1041 221 140 17 chrX 14190692 14191050 -148408880 - LTR16A1 LTR ERVL -1 456 55 1058 180 95 0 chrX 14191099 14191299 -148408631 - MER58A DNA MER1_type -3 221 3 1620 135 36 7 chrX 14191466 14191740 -148408190 + MER4C LTR ERV1 184 465 0 468 319 121 29 chrX 14191889 14192237 -148407693 + L2 LINE L2 1875 2254 -1060 221 358 75 8 chrX 14192533 14192667 -148407263 + L2 LINE L2 3171 3313 0 226 306 167 9 chrX 14193223 14193331 -148406599 - MIR3 SINE MIR -33 175 51 310 284 42 0 chrX 14193387 14193482 -148406448 - MIR SINE MIR -65 143 45 23 0 0 0 chrX 14194152 14194175 -148405755 + AT_rich Low_complexity Low_complexity 1 23 0 592 90 11 0 chrX 14194232 14194321 -148405609 + L1PA13 LINE L1 6061 6150 -13 391 283 97 0 chrX 14194479 14194592 -148405338 - L2 LINE L2 -1 3312 3189 267 342 108 0 chrX 14194823 14194934 -148404996 - L2 LINE L2 0 3272 3150 261 301 12 12 chrX 14196055 14196138 -148403792 + L2 LINE L2 3231 3313 0 206 227 0 15 chrX 14196144 14196210 -148403720 + GA-rich Low_complexity Low_complexity 4 68 0 425 296 36 106 chrX 14196613 14196914 -148403016 - L2 LINE L2 -1 3271 2992 34 0 0 0 chrX 14197124 14197158 -148402772 + AT_rich Low_complexity Low_complexity 1 34 0 2176 125 14 0 chrX 14197227 14197523 -148402407 + AluSx SINE Alu 1 300 -12 1768 127 100 21 chrX 14197853 14198192 -148401738 - MER47A DNA MER2_type 0 366 1 280 265 0 0 chrX 14199839 14199941 -148399989 - HAL1 LINE L1 -121 2386 2285 378 335 104 14 chrX 14199959 14200180 -148399750 - HAL1 LINE L1 -293 2214 1974 393 225 36 9 chrX 14200263 14200374 -148399556 - HAL1 LINE L1 -723 1784 1671 349 304 29 0 chrX 14200609 14200711 -148399219 - HAL1 LINE L1 -2402 105 1 562 252 161 0 chrX 14201206 14201361 -148398569 + MER5A DNA MER1_type 9 188 -1 936 141 11 54 chrX 14201370 14201555 -148398375 - MER5B DNA MER1_type 0 178 2 22 35 0 0 chrX 14202413 14202442 -148397488 + AT_rich Low_complexity Low_complexity 1 29 0 835 251 11 0 chrX 14202958 14203145 -148396785 + MER5A DNA MER1_type 1 189 0 1067 225 35 86 chrX 14203615 14204225 -148395705 - L2 LINE L2 -70 3243 2678 323 253 0 0 chrX 14204871 14204946 -148394984 - MIR SINE MIR 0 262 188 1289 269 42 3 chrX 14205031 14205388 -148394542 - LTR16C LTR ERVL -117 374 4 1294 99 0 0 chrX 14206571 14206733 -148393197 - AluSg/x SINE Alu -16 296 135 1887 148 11 0 chrX 14207507 14207813 -148392117 - AluJo SINE Alu 0 309 1 369 0 0 0 chrX 14208327 14208368 -148391562 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrX 14208391 14208423 -148391507 + (TA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chrX 14208561 14208585 -148391345 + AT_rich Low_complexity Low_complexity 1 24 0 908 294 44 17 chrX 14208608 14209019 -148390911 - L1MC4a LINE L1 -1932 5876 5455 208 271 21 0 chrX 14209986 14210034 -148389896 + MIR SINE MIR 206 254 -8 1480 145 98 50 chrX 14211126 14211168 -148388762 + MER58B DNA MER1_type 9 48 -2372 2070 99 3 7 chrX 14211168 14211490 -148388440 - AluSx SINE Alu 0 321 1 1480 145 98 50 chrX 14211490 14211764 -148388166 + MER58B DNA MER1_type 48 341 0 316 133 50 0 chrX 14213380 14213440 -148386490 - MER67C LTR ERV1 -228 482 420 1906 195 24 7 chrX 14213702 14214127 -148385803 + LTR56 LTR ERV1 1 432 -13 23 33 0 0 chrX 14214213 14214243 -148385687 + AT_rich Low_complexity Low_complexity 1 30 0 502 323 32 0 chrX 14214373 14214528 -148385402 + MER5A DNA MER1_type 25 184 -5 21 0 0 0 chrX 14215062 14215083 -148384847 + AT_rich Low_complexity Low_complexity 1 21 0 442 310 63 52 chrX 14215092 14215570 -148384360 + L1MC4a LINE L1 4018 4489 -1657 2106 156 0 0 chrX 14215570 14215877 -148384053 + AluSx SINE Alu 1 307 -5 442 310 63 52 chrX 14215877 14216548 -148383382 + L1MC4a LINE L1 4489 5180 -966 885 207 104 28 chrX 14216630 14216881 -148383049 + L1MC4a LINE L1 5305 5574 -2234 399 196 0 54 chrX 14216889 14217001 -148382929 + L1MC4a LINE L1 5908 6013 -1795 205 300 100 0 chrX 14219004 14219074 -148380856 + MER91B DNA MER1_type 4 80 -110 271 320 29 48 chrX 14219422 14219525 -148380405 + L2 LINE L2 3152 3252 -20 24 0 0 0 chrX 14219525 14219549 -148380381 + AT_rich Low_complexity Low_complexity 1 24 0 687 271 116 14 chrX 14219585 14219792 -148380138 - MIR SINE MIR -28 234 7 243 299 179 52 chrX 14219910 14220253 -148379677 + L2 LINE L2 2716 3096 -176 398 71 0 0 chrX 14220254 14220310 -148379620 - MADE1 DNA Mariner 0 80 25 315 0 0 0 chrX 14220366 14220401 -148379529 + (TG)n Simple_repeat Simple_repeat 2 36 0 632 274 119 5 chrX 14220675 14220894 -148379036 + MIR SINE MIR 6 249 -13 641 285 92 18 chrX 14221924 14222152 -148377778 + MIR SINE MIR 10 254 -8 624 281 112 20 chrX 14222279 14222574 -148377356 - MARNA DNA Mariner -71 515 194 2110 133 0 0 chrX 14222598 14222891 -148377039 - AluSx SINE Alu -19 293 1 1125 178 62 0 chrX 14223343 14223551 -148376379 - MER58A DNA MER1_type -1 223 3 493 182 11 11 chrX 14223808 14223896 -148376034 - FLAM_A SINE Alu -21 121 34 369 237 126 65 chrX 14224463 14224835 -148375095 - L1ME4a LINE L1 -31 6090 5696 325 286 96 31 chrX 14224839 14225098 -148374832 + L1MC4a LINE L1 5647 5883 -238 4463 131 7 6 chrX 14225227 14225937 -148373993 + MER50 LTR ERV1 1 711 -23 253 301 124 35 chrX 14227016 14227129 -148372801 + L2 LINE L2 3134 3256 -16 22 0 0 0 chrX 14227457 14227479 -148372451 + AT_rich Low_complexity Low_complexity 1 22 0 1019 40 0 0 chrX 14227511 14227636 -148372294 + L1MA1 LINE L1 6178 6302 0 31 82 0 0 chrX 14229556 14229629 -148370301 + AT_rich Low_complexity Low_complexity 1 73 0 6162 45 11 2 chrX 14230483 14231283 -148368647 - L1PA7 LINE L1 -2 6152 5346 30 45 0 0 chrX 14231404 14231448 -148368482 + AT_rich Low_complexity Low_complexity 1 44 0 692 193 7 21 chrX 14231991 14232131 -148367799 - MER45A DNA AcHobo 0 178 41 835 261 37 14 chrX 14232307 14232522 -148367408 + MIR SINE MIR 6 225 -37 558 153 81 54 chrX 14232671 14232782 -148367148 + MER81 DNA DNA 1 114 0 661 125 17 0 chrX 14232832 14232952 -148366978 + GA-rich Low_complexity Low_complexity 1 122 0 1639 266 102 45 chrX 14233102 14233700 -148366230 + MER115 DNA AcHobo 61 692 -1 23 0 0 0 chrX 14234261 14234284 -148365646 + AT_rich Low_complexity Low_complexity 1 23 0 203 206 63 16 chrX 14234723 14234786 -148365144 + (CACAT)n Simple_repeat Simple_repeat 4 69 0 26 74 0 0 chrX 14235397 14235451 -148364479 + AT_rich Low_complexity Low_complexity 1 54 0 602 332 100 7 chrX 14235856 14236287 -148363643 + L1MC4a LINE L1 5459 5929 -1879 25 31 0 0 chrX 14236406 14236438 -148363492 + AT_rich Low_complexity Low_complexity 1 32 0 1704 137 0 10 chrX 14237589 14237882 -148362048 + L1PA13 LINE L1 5874 6163 0 25 75 0 0 chrX 14238348 14238401 -148361529 + AT_rich Low_complexity Low_complexity 1 53 0 195 270 88 88 chrX 14238589 14238726 -148361204 + MIR SINE MIR 47 183 -79 745 222 84 15 chrX 14238923 14239126 -148360804 - MIR SINE MIR -14 248 32 225 217 22 0 chrX 14239367 14239413 -148360517 - L2 LINE L2 -10 3262 3216 358 267 121 35 chrX 14240467 14240868 -148359062 + MLT1H1 LTR MaLR 108 549 0 362 276 89 16 chrX 14241193 14241316 -148358614 - MER5B DNA MER1_type 0 178 47 463 333 7 33 chrX 14241907 14242060 -148357870 + MIR3 SINE MIR 43 191 -17 1935 161 10 0 chrX 14242385 14242689 -148357241 - AluJb SINE Alu -5 307 1 229 288 0 17 chrX 14243589 14243648 -148356282 - L3 LINE CR1 -2 1575 1518 229 122 0 0 chrX 14243726 14243767 -148356163 - L1MA3 LINE L1 -1 6304 6264 387 0 0 0 chrX 14243783 14243826 -148356104 + (TA)n Simple_repeat Simple_repeat 1 43 0 218 37 0 0 chrX 14243827 14243854 -148356076 + (TG)n Simple_repeat Simple_repeat 2 28 0 643 37 0 0 chrX 14243856 14243938 -148355992 - AluY SINE Alu -6 304 223 1233 89 6 0 chrX 14243938 14244117 -148355813 - L1MA1 LINE L1 -18 6284 6105 2524 76 0 0 chrX 14244188 14244489 -148355441 + AluSq SINE Alu 1 301 -12 630 121 0 0 chrX 14246643 14246742 -148353188 + L1MB2 LINE L1 6069 6167 -4 381 176 0 0 chrX 14248821 14248895 -148351035 + GA-rich Low_complexity Low_complexity 4 77 0 2016 226 65 29 chrX 14248895 14249168 -148350762 + L1ME3A LINE L1 5496 5758 -412 1963 203 77 29 chrX 14249168 14249650 -148350280 + MLT1D LTR MaLR 1 505 0 2016 226 65 29 chrX 14249650 14250023 -148349907 + L1ME3A LINE L1 5758 6165 -5 216 67 0 0 chrX 14250030 14250060 -148349870 + (TG)n Simple_repeat Simple_repeat 1 30 0 598 249 76 5 chrX 14250562 14250759 -148349171 - L1MB7 LINE L1 -47 6137 5927 1341 200 101 44 chrX 14250870 14251051 -148348879 - MLT1C LTR MaLR -7 460 291 2610 148 16 5 chrX 14251051 14251476 -148348454 + MSTB1 LTR MaLR 1 430 -2 1341 200 101 44 chrX 14251476 14251729 -148348201 - MLT1C LTR MaLR -176 291 1 23 0 0 0 chrX 14254313 14254336 -148345594 + AT_rich Low_complexity Low_complexity 1 23 0 892 235 34 133 chrX 14255387 14255742 -148344188 - L1MC4 LINE L1 0 8042 7756 2983 43 0 5 chrX 14255742 14256111 -148343819 - L1PA8 LINE L1 -2 6170 5804 892 235 34 133 chrX 14256111 14256291 -148343639 - L1MC4 LINE L1 -286 7756 7560 311 250 102 37 chrX 14256604 14256712 -148343218 + MIR SINE MIR 140 254 -8 495 250 38 25 chrX 14257111 14257271 -148342659 - MIR SINE MIR -55 207 46 250 250 14 0 chrX 14257713 14257785 -148342145 + MLT1L LTR MaLR 199 271 -344 495 228 53 53 chrX 14257804 14257993 -148341937 + MLT1J LTR MaLR 323 511 0 207 265 39 36 chrX 14258343 14258444 -148341486 - MIR SINE MIR -58 150 80 240 35 0 0 chrX 14258693 14258722 -148341208 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 325 296 23 30 chrX 14259039 14259171 -148340759 + MIR SINE MIR 124 254 -8 512 354 51 16 chrX 14259950 14260264 -148339666 - L3 LINE CR1 -45 1532 1208 234 309 69 26 chrX 14260289 14260469 -148339461 - MIR SINE MIR -9 253 9 872 145 0 0 chrX 14260556 14260680 -148339250 - FLAM_C SINE Alu -19 124 1 503 326 82 66 chrX 14260955 14261396 -148338534 + L2 LINE L2 2823 3270 -2 1039 173 5 34 chrX 14262147 14262355 -148337575 - MER20 DNA MER1_type -17 202 1 1267 126 165 54 chrX 14264875 14265136 -148334794 + AluJo SINE Alu 1 290 -12 23 0 0 0 chrX 14265213 14265236 -148334694 + AT_rich Low_complexity Low_complexity 1 23 0 286 316 140 24 chrX 14266665 14266829 -148333101 + MIR SINE MIR 59 240 -22 191 238 48 95 chrX 14267020 14267125 -148332805 - MIR SINE MIR -5 257 158 474 286 75 0 chrX 14267187 14267348 -148332582 - MIR SINE MIR -83 179 7 204 252 191 38 chrX 14267421 14267552 -148332378 - MIR3 SINE MIR -9 199 49 393 246 97 30 chrX 14268847 14268981 -148330949 + MIR SINE MIR 48 190 -72 397 243 230 14 chrX 14269348 14269496 -148330434 + MER5A DNA MER1_type 9 188 -1 394 250 29 64 chrX 14269900 14270072 -148329858 + MER69A DNA AcHobo 2 167 -10 344 336 0 22 chrX 14271088 14271222 -148328708 - L2 LINE L2 0 3313 3183 2627 107 3 8 chrX 14271634 14272000 -148327930 + THE1B LTR MaLR 1 364 0 684 93 0 0 chrX 14272449 14272546 -148327384 + (GA)n Simple_repeat Simple_repeat 2 98 0 1911 261 106 30 chrX 14272619 14273571 -148326359 + L2 LINE L2 2197 3214 -99 239 57 29 0 chrX 14274008 14274043 -148325887 + MER58A DNA MER1_type 49 84 -23 647 174 16 0 chrX 14274099 14274220 -148325710 + MER58A DNA MER1_type 99 221 -3 1999 162 6 16 chrX 14274991 14275355 -148324575 + MLT1A1 LTR MaLR 6 365 0 3432 162 35 40 chrX 14275366 14275886 -148324044 - MLT-int LTR MaLR -1013 722 206 2097 148 3 0 chrX 14275886 14276197 -148323733 + AluJb SINE Alu 1 312 0 3432 162 35 40 chrX 14276197 14276399 -148323531 - MLT-int LTR MaLR -1529 206 4 194 255 20 0 chrX 14277257 14277308 -148322622 - MIR SINE MIR -116 146 95 211 111 22 22 chrX 14277324 14277369 -148322561 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 1404 306 33 17 chrX 14277541 14278309 -148321621 + L1M4 LINE L1 3437 4216 -1930 486 254 97 53 chrX 14278718 14279174 -148320756 + L1M4 LINE L1 4213 4688 -1458 314 315 236 41 chrX 14279308 14279915 -148320015 + L2 LINE L2 2323 3060 -212 1085 133 9 57 chrX 14280146 14280356 -148319574 - THE1B LTR MaLR 0 364 165 2450 65 3 7 chrX 14281078 14281385 -148318545 - AluSp SINE Alu -7 306 1 222 260 0 0 chrX 14281618 14281668 -148318262 + L2 LINE L2 2271 2320 -994 1316 167 42 90 chrX 14282205 14282559 -148317371 + MER58B DNA MER1_type 1 337 -4 514 276 9 74 chrX 14282889 14283106 -148316824 - MIR SINE MIR -25 237 35 601 223 128 0 chrX 14284005 14284153 -148315777 - MIR SINE MIR -81 181 15 372 316 126 50 chrX 14284175 14284532 -148315398 + L3 LINE CR1 1180 1563 -14 1992 139 5 62 chrX 14284773 14285141 -148314789 - MER7A DNA MER2_type -1 345 1 195 333 71 0 chrX 14285149 14285248 -148314682 + MIR SINE MIR 157 262 0 2584 97 39 12 chrX 14286516 14286928 -148313002 - L1MA8 LINE L1 -5 6286 5864 1596 173 50 91 chrX 14287282 14287695 -148312235 - Charlie4a DNA MER1_type -1459 502 111 640 115 35 0 chrX 14287695 14287808 -148312122 + L1MB3 LINE L1 6067 6183 0 1596 173 50 91 chrX 14287808 14287890 -148312040 - Charlie4a DNA MER1_type -1850 111 27 309 265 50 36 chrX 14288078 14288297 -148311633 - L1ME4a LINE L1 -178 5943 5722 2547 64 6 0 chrX 14288411 14288722 -148311208 - AluSp SINE Alu 0 313 1 795 208 69 24 chrX 14289153 14289441 -148310489 - L1MC5 LINE L1 -30 7931 7631 525 268 93 80 chrX 14289787 14290175 -148309755 - MLT1J LTR MaLR -2 509 117 748 71 390 7 chrX 14290405 14290546 -148309384 - AluSg/x SINE Alu -14 295 101 262 0 0 79 chrX 14290646 14290684 -148309246 - THE1C LTR MaLR -340 35 1 24 32 0 0 chrX 14291162 14291193 -148308737 + AT_rich Low_complexity Low_complexity 1 31 0 318 224 15 0 chrX 14291256 14291323 -148308607 + AluSp/q SINE Alu 235 302 -1 21 57 0 0 chrX 14292576 14292611 -148307319 + AT_rich Low_complexity Low_complexity 1 35 0 2797 223 23 7 chrX 14292766 14293380 -148306550 - MER82 DNA MER2_type -29 624 1 28 29 0 0 chrX 14293708 14293743 -148306187 + AT_rich Low_complexity Low_complexity 1 35 0 436 295 25 30 chrX 14293761 14293961 -148305969 - L1ME4a LINE L1 -2240 5568 5370 278 241 196 0 chrX 14294103 14294215 -148305715 + L3 LINE CR1 1279 1412 -165 26 30 0 0 chrX 14294323 14294356 -148305574 + AT_rich Low_complexity Low_complexity 1 33 0 202 311 379 0 chrX 14294480 14294612 -148305318 + MER5A DNA MER1_type 8 189 0 402 256 0 0 chrX 14295119 14295205 -148304725 - MER81 DNA DNA -26 88 3 410 283 186 41 chrX 14295611 14295880 -148304050 + L1ME LINE L1 3912 4219 -1927 2582 132 35 14 chrX 14296204 14296629 -148303301 + MER57B LTR ERV1 1 434 0 329 311 36 68 chrX 14296681 14296812 -148303118 + L1ME LINE L1 5601 5724 -397 2317 82 3 0 chrX 14296812 14297129 -148302801 + AluSg SINE Alu 1 310 0 329 311 36 68 chrX 14297129 14297219 -148302711 + L1ME LINE L1 5724 5815 -306 997 160 4 67 chrX 14297282 14297507 -148302423 - MER20 DNA MER1_type -5 214 4 1506 189 42 34 chrX 14297892 14298274 -148301656 - L1MB7 LINE L1 -72 6112 5728 184 275 0 0 chrX 14298476 14298516 -148301414 - L3 LINE CR1 -289 1288 1249 228 169 102 0 chrX 14299324 14299383 -148300547 + MER20 DNA MER1_type 1 65 -154 * 243 114 0 0 chrX 14299375 14299410 -148300520 - U2 snRNA snRNA -152 36 2 735 116 62 0 chrX 14299412 14299541 -148300389 + MER20 DNA MER1_type 41 177 -42 2558 77 0 3 chrX 14299765 14300078 -148299852 + AluSq SINE Alu 2 313 0 423 268 73 0 chrX 14300403 14300526 -148299404 - MIR SINE MIR -76 186 55 21 0 0 0 chrX 14301382 14301403 -148298527 + AT_rich Low_complexity Low_complexity 1 21 0 1368 201 109 6 chrX 14301533 14301882 -148298048 + L1MD3 LINE L1 7606 7990 -5 23 68 0 0 chrX 14302099 14302143 -148297787 + AT_rich Low_complexity Low_complexity 1 44 0 775 256 111 49 chrX 14303578 14303922 -148296008 - L2 LINE L2 0 3313 2949 249 335 91 11 chrX 14304004 14304180 -148295750 - MIR SINE MIR -48 214 25 198 0 0 0 chrX 14304638 14304660 -148295270 + (A)n Simple_repeat Simple_repeat 1 22 0 350 269 79 97 chrX 14306325 14306768 -148293162 - L1MC4a LINE L1 -53 6068 5634 383 281 121 25 chrX 14306774 14306973 -148292957 - L1MC4a LINE L1 -1128 5018 4801 487 288 48 0 chrX 14307698 14307823 -148292107 + L2 LINE L2 3180 3310 -3 22 0 0 0 chrX 14307845 14307867 -148292063 + AT_rich Low_complexity Low_complexity 1 22 0 993 165 0 100 chrX 14308699 14308853 -148291077 + MER3 DNA MER1_type 3 128 -81 2401 92 0 6 chrX 14308853 14309168 -148290762 - AluSq SINE Alu 0 313 1 993 165 0 100 chrX 14309168 14309243 -148290687 + MER3 DNA MER1_type 128 209 0 316 286 143 30 chrX 14309547 14309680 -148290250 + MER91A DNA MER1_type 47 194 -2 305 271 68 8 chrX 14309816 14309831 -148290099 - L1ME1 LINE L1 -5 6161 6147 3851 189 77 10 chrX 14309831 14310742 -148289188 - L1MA6 LINE L1 -12 6288 5317 557 204 7 27 chrX 14310752 14310899 -148289031 + L1MA6 LINE L1 5193 5336 -810 449 307 88 61 chrX 14311069 14311476 -148288454 + L2 LINE L2 1575 1992 -1322 1776 169 7 0 chrX 14312023 14312307 -148287623 - AluJo SINE Alu -25 287 2 260 296 38 53 chrX 14312321 14312453 -148287477 - MIR SINE MIR -105 157 28 1057 187 84 0 chrX 14312668 14312871 -148287059 - MER58A DNA MER1_type -3 221 2 435 357 5 10 chrX 14312954 14313153 -148286777 + L2 LINE L2 2880 3077 -195 880 270 121 14 chrX 14313358 14313714 -148286216 + LTR16C LTR ERVL 98 491 0 973 267 58 31 chrX 14313967 14314293 -148285637 + LTR16A LTR ERVL 53 387 -70 522 283 61 54 chrX 14315537 14315816 -148284114 - LTR16A1 LTR ERVL -2 455 175 207 88 0 0 chrX 14316160 14316194 -148283736 + (T)n Simple_repeat Simple_repeat 1 34 0 808 244 139 4 chrX 14317147 14317377 -148282553 + MIR SINE MIR 2 262 0 683 233 157 0 chrX 14317806 14317965 -148281965 - MER5A DNA MER1_type 0 189 6 254 235 0 106 chrX 14318061 14318146 -148281784 + MIR3 SINE MIR 85 160 -48 797 236 74 9 chrX 14318563 14318792 -148281138 + MIR SINE MIR 16 259 -3 282 316 13 0 chrX 14318966 14319042 -148280888 + L2 LINE L2 3196 3272 0 313 299 74 58 chrX 14320520 14320982 -148278948 + L1MC4a LINE L1 6058 6526 -1282 379 310 62 16 chrX 14321656 14321785 -148278145 - L2 LINE L2 -22 3250 3116 2382 61 0 35 chrX 14323051 14323364 -148276566 + AluY SINE Alu 1 302 -9 238 100 0 0 chrX 14323562 14323602 -148276328 + L1MB7 LINE L1 6135 6174 -10 214 289 40 0 chrX 14323815 14323891 -148276039 - L2 LINE L2 -9 3263 3185 1170 99 37 11 chrX 14324107 14324298 -148275632 - MER30 DNA MER1_type -34 196 1 2661 45 3 0 chrX 14324541 14324851 -148275079 + AluY SINE Alu 1 311 0 1645 63 0 9 chrX 14325121 14325342 -148274588 - L1PA6 LINE L1 -2 6152 5934 14396 106 22 56 chrX 14326149 14328652 -148271278 - Tigger1 DNA MER2_type 0 2418 1 343 329 78 17 chrX 14329928 14330341 -148269589 + L1MC/D LINE L1 5373 5810 -1998 210 37 0 0 chrX 14330658 14330685 -148269245 + (GA)n Simple_repeat Simple_repeat 2 28 0 393 250 201 14 chrX 14330848 14330992 -148268938 + MIR SINE MIR 20 190 -72 200 179 0 26 chrX 14330991 14331030 -148268900 + L2 LINE L2 3264 3301 -12 * 223 279 0 51 chrX 14331133 14331174 -148268756 - MIR SINE MIR -8 254 217 1481 154 59 0 chrX 14331174 14331480 -148268450 - MER33 DNA MER1_type 0 324 1 223 279 0 51 chrX 14331480 14331517 -148268413 - MIR SINE MIR -45 217 180 661 187 32 0 chrX 14332105 14332228 -148267702 - MIR SINE MIR -128 134 8 1525 225 25 83 chrX 14332641 14333206 -148266724 - LTR55 LTR ERV -16 532 1 523 318 36 5 chrX 14333382 14333574 -148266356 - MIR3 SINE MIR -8 200 3 2004 132 54 0 chrX 14335393 14335736 -148264194 - AluSx SINE Alu 0 359 1 560 131 16 55 chrX 14336170 14336353 -148263577 + CT-rich Low_complexity Low_complexity 4 179 0 658 99 57 36 chrX 14336390 14337078 -148262852 + CT-rich Low_complexity Low_complexity 1 701 0 1450 324 134 36 chrX 14337126 14338321 -148261609 + L2 LINE L2 1978 3313 0 315 221 15 0 chrX 14338396 14338464 -148261466 + MIR SINE MIR 191 259 -3 39 38 0 0 chrX 14338466 14338519 -148261411 + AT_rich Low_complexity Low_complexity 1 53 0 326 266 44 26 chrX 14339187 14339300 -148260630 + L1ME LINE L1 5653 5767 -354 2331 84 0 0 chrX 14340662 14340960 -148258970 - AluY SINE Alu -13 298 1 192 242 84 42 chrX 14341600 14341695 -148258235 - MIR3 SINE MIR -8 200 102 937 119 0 8 chrX 14341727 14341861 -148258069 + FLAM_C SINE Alu 1 133 -10 248 118 0 39 chrX 14341867 14341918 -148258012 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 253 253 101 0 chrX 14342665 14342744 -148257186 + L1MC4 LINE L1 6614 6700 -1342 258 32 0 0 chrX 14342815 14342846 -148257084 + (TG)n Simple_repeat Simple_repeat 2 32 0 477 214 18 18 chrX 14342941 14343053 -148256877 - L2 LINE L2 -6 3307 3196 2695 224 56 8 chrX 14343156 14343818 -148256112 - L1ME3A LINE L1 -7 6163 5470 2453 71 0 3 chrX 14344826 14345136 -148254794 + AluSc SINE Alu 1 309 0 322 262 125 42 chrX 14345148 14345316 -148254614 - MIR3 SINE MIR -7 201 20 1772 163 0 20 chrX 14345525 14345820 -148254110 - AluJo SINE Alu -21 291 3 12101 147 33 16 chrX 14345835 14346908 -148253022 - L1MA4 LINE L1 -3 6297 5244 2275 108 0 0 chrX 14346908 14347204 -148252726 - AluSx SINE Alu -16 296 1 12101 147 33 16 chrX 14347204 14349274 -148250656 - L1MA4 LINE L1 -1056 5244 3101 911 174 0 13 chrX 14349679 14349834 -148250096 - FRAM SINE Alu -12 164 12 474 328 100 26 chrX 14349845 14350156 -148249774 - L1MC/D LINE L1 -1989 5819 5486 2202 89 7 0 chrX 14350305 14350619 -148249311 - AluSx SINE Alu 0 316 1 2423 81 0 0 chrX 14350627 14350922 -148249008 - AluSq SINE Alu -18 295 1 245 162 15 0 chrX 14351078 14351146 -148248784 + CT-rich Low_complexity Low_complexity 2 70 0 405 0 0 0 chrX 14351147 14351192 -148248738 + (CA)n Simple_repeat Simple_repeat 2 46 0 2531 181 24 18 chrX 14352511 14353013 -148246917 + MLT1D LTR MaLR 1 505 0 1268 203 195 48 chrX 14353154 14353291 -148246639 - MLT1E LTR MaLR 0 593 477 1795 149 3 57 chrX 14353291 14353606 -148246324 + AluSx SINE Alu 6 303 -9 1268 203 195 48 chrX 14353606 14353985 -148245945 - MLT1E LTR MaLR -116 477 1 391 162 90 9 chrX 14354429 14354540 -148245390 - L1MC/D LINE L1 -806 5340 5221 1547 120 19 0 chrX 14354765 14355032 -148244898 - L1MA8 LINE L1 -3 6288 6017 872 250 19 29 chrX 14355185 14355424 -148244506 - MIR SINE MIR -1 261 25 506 178 178 0 chrX 14355729 14355830 -148244100 + FLAM_C SINE Alu 1 119 -14 2670 78 17 35 chrX 14407381 14407803 -148192127 + L1MA1 LINE L1 5889 6302 0 934 150 69 0 chrX 14407960 14408120 -148191810 - AluJo SINE Alu -109 203 33 1858 176 10 22 chrX 14408827 14409140 -148190790 + AluJo SINE Alu 1 309 -3 2024 98 33 0 chrX 14409147 14409454 -148190476 + AluY SINE Alu 1 316 0 746 226 92 26 chrX 14410059 14410254 -148189676 - MER63A DNA MER1_type -1 209 2 1488 185 150 14 chrX 14410264 14410697 -148189233 - Charlie4a DNA MER1_type 0 508 17 369 0 0 0 chrX 14411473 14411514 -148188416 + (CA)n Simple_repeat Simple_repeat 1 41 0 193 300 33 11 chrX 14411649 14411739 -148188191 + L2 LINE L2 2946 3037 -276 1219 46 13 0 chrX 14411932 14412085 -148187845 - L1PA5 LINE L1 -6 6148 5994 211 189 19 19 chrX 14412255 14412308 -148187622 + L2 LINE L2 3261 3313 0 2465 57 3 0 chrX 14413144 14413443 -148186487 + AluY SINE Alu 1 300 -11 260 174 159 0 chrX 14413961 14414030 -148185900 + MER116 DNA Mariner 1 80 0 478 300 33 7 chrX 14414481 14414631 -148185299 + MIR SINE MIR 51 204 -58 767 193 171 0 chrX 14414658 14414839 -148185091 + MER58A DNA MER1_type 3 214 -10 1819 89 4 4 chrX 14416105 14416364 -148183566 - Charlie3 DNA MER1_type -8 2702 2444 * 2424 145 8 0 chrX 14416362 14416734 -148183196 - MER1A DNA MER1_type -154 375 1 326 146 64 0 chrX 14417926 14417997 -148181933 - MLT1H LTR MaLR -3 552 477 227 216 135 27 chrX 14418031 14418179 -148181751 - MLT1H LTR MaLR -204 391 228 287 263 12 0 chrX 14418190 14418270 -148181660 - MLT2E LTR ERVL -88 540 460 482 277 71 7 chrX 14418325 14418480 -148181450 - MLT2E LTR ERVL -306 322 158 363 244 67 37 chrX 14418807 14418942 -148180988 - L1ME4a LINE L1 -1 6120 5982 469 314 30 17 chrX 14418993 14419356 -148180574 - L1ME4a LINE L1 -256 5865 5461 308 277 48 0 chrX 14421490 14421573 -148178357 - MIR3 SINE MIR -9 199 113 681 264 109 5 chrX 14421606 14421807 -148178123 - MIR SINE MIR -21 241 20 267 239 0 42 chrX 14421863 14421934 -148177996 - MIR SINE MIR -125 83 16 775 200 144 0 chrX 14422213 14422373 -148177557 + MER5A DNA MER1_type 4 186 -3 225 378 0 0 chrX 14422655 14422737 -148177193 + L2 LINE L2 2234 2315 -999 2499 66 0 25 chrX 14422787 14423107 -148176823 + AluSx SINE Alu 1 312 0 207 356 113 32 chrX 14423131 14423502 -148176428 + L2 LINE L2 2529 2929 -385 291 260 0 106 chrX 14423668 14423791 -148176139 + L2 LINE L2 3204 3313 0 1139 226 5 0 chrX 14424304 14424525 -148175405 + MER58A DNA MER1_type 2 223 -1 387 151 14 14 chrX 14427150 14427223 -148172707 + MER106A DNA MER1_type 1 73 -163 2132 107 0 0 chrX 14427837 14428145 -148171785 - AluY SINE Alu 0 308 1 27 73 0 0 chrX 14428632 14428687 -148171243 + AT_rich Low_complexity Low_complexity 1 55 0 391 280 42 8 chrX 14429284 14429402 -148170528 + MER91C DNA MER1_type 4 125 -15 501 282 155 82 chrX 14430826 14431277 -148168653 - L2 LINE L2 0 3313 2830 725 213 101 19 chrX 14431277 14431484 -148168446 - MER58 DNA MER1_type -107 234 11 479 294 23 55 chrX 14431504 14431722 -148168208 + L2 LINE L2 3101 3311 -2 1107 272 73 8 chrX 14432210 14432581 -148167349 - MLT1I LTR MaLR -8 401 7 256 174 0 22 chrX 14432944 14432990 -148166940 - L2 LINE L2 -4 3309 3265 292 171 38 124 chrX 14433694 14433799 -148166131 - MLT1H LTR MaLR 0 549 454 273 151 0 0 chrX 14434434 14434487 -148165443 + (CA)n Simple_repeat Simple_repeat 1 53 0 21 36 0 0 chrX 14435021 14435049 -148164881 + AT_rich Low_complexity Low_complexity 1 28 0 204 231 0 0 chrX 14435165 14435217 -148164713 + GA-rich Low_complexity Low_complexity 1 52 0 364 343 66 6 chrX 14435219 14435385 -148164545 - MIR SINE MIR -9 253 78 189 107 0 0 chrX 14435385 14435413 -148164517 + (A)n Simple_repeat Simple_repeat 1 28 0 1967 185 94 53 chrX 14435482 14436045 -148163885 - L1MD2 LINE L1 -221 6138 5553 280 224 0 0 chrX 14437517 14437575 -148162355 - L1MD3 LINE L1 -55 7940 7883 461 245 0 72 chrX 14437575 14437714 -148162216 + MER5B DNA MER1_type 39 167 -11 324 211 0 0 chrX 14439022 14439079 -148160851 + MER5A DNA MER1_type 7 63 -126 186 133 0 0 chrX 14439376 14439406 -148160524 + (A)n Simple_repeat Simple_repeat 1 30 0 258 211 367 11 chrX 14439406 14439496 -148160434 + MER5A DNA MER1_type 61 182 -7 227 341 49 12 chrX 14439639 14439721 -148160209 - L2 LINE L2 -87 3185 3101 471 267 181 95 chrX 14439882 14440208 -148159722 - L2 LINE L2 0 3272 2919 288 174 58 9 chrX 14440431 14440528 -148159402 - L1MB8 LINE L1 -168 6010 5949 * 854 239 30 9 chrX 14440507 14440737 -148159193 - L1MB8 LINE L1 -499 5667 5433 1794 169 16 22 chrX 14442009 14442041 -148157889 - AluJb SINE Alu 0 312 281 1162 61 11 17 chrX 14442041 14442221 -148157709 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1794 169 16 22 chrX 14442221 14442502 -148157428 - AluJb SINE Alu -31 281 1 186 368 0 0 chrX 14442732 14442789 -148157141 - L3 LINE CR1 -3 1574 1518 2228 70 0 14 chrX 14443866 14444180 -148155750 + AluY SINE Alu 1 310 0 230 301 78 34 chrX 14444222 14444518 -148155412 + L1MEd LINE L1 897 1205 -4914 792 206 0 29 chrX 14444552 14444722 -148155208 - MER58A DNA MER1_type 0 165 1 2029 134 0 0 chrX 14444743 14445041 -148154889 + AluSx SINE Alu 1 298 -14 902 249 65 26 chrX 14446153 14446494 -148153436 - MLT1C LTR MaLR -4 463 110 2176 116 7 0 chrX 14497841 14498144 -148101786 - AluSx SINE Alu -7 305 1 2049 112 0 20 chrX 14498157 14498452 -148101478 - AluSx SINE Alu 0 312 24 25 83 0 0 chrX 14498459 14498519 -148101411 + AT_rich Low_complexity Low_complexity 1 60 0 2222 95 0 0 chrX 14499843 14500157 -148099773 - AluSx SINE Alu 0 314 1 436 303 81 29 chrX 14500546 14500902 -148099028 - MLT1K LTR MaLR -166 422 1 2281 105 0 3 chrX 14501001 14501297 -148098633 - AluSq SINE Alu -18 295 1 2341 92 0 0 chrX 14502274 14502567 -148097363 + AluSg SINE Alu 1 293 -17 278 273 130 93 chrX 14502995 14503211 -148096719 - MIR SINE MIR -15 247 24 2552 70 0 0 chrX 14503213 14503514 -148096416 - AluSc SINE Alu -8 301 1 689 216 144 12 chrX 14503686 14503853 -148096077 - MER5A DNA MER1_type 0 189 1 276 30 0 0 chrX 14503859 14503892 -148096038 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2359 60 0 3 chrX 14503894 14504177 -148095753 - AluSq SINE Alu -31 282 1 2216 113 7 0 chrX 14504460 14504762 -148095168 + AluSg1 SINE Alu 1 304 -5 2638 48 0 0 chrX 14505617 14505928 -148094002 - AluY SINE Alu 0 311 1 372 133 0 0 chrX 14506872 14506932 -148092998 + (TA)n Simple_repeat Simple_repeat 1 60 0 209 132 0 19 chrX 14507055 14507108 -148092822 + (TA)n Simple_repeat Simple_repeat 1 52 0 284 272 25 0 chrX 14507487 14507568 -148092362 + CT-rich Low_complexity Low_complexity 3 85 0 929 151 8 155 chrX 14507723 14507903 -148092027 + MER20 DNA MER1_type 4 138 -81 2355 103 0 0 chrX 14507903 14508213 -148091717 + AluSg SINE Alu 1 310 0 929 151 8 155 chrX 14508213 14508284 -148091646 + MER20 DNA MER1_type 138 218 -1 689 221 21 0 chrX 14508293 14508433 -148091497 + MER33 DNA MER1_type 1 143 -181 501 191 0 21 chrX 14508440 14508534 -148091396 - AluSp/q SINE Alu -11 302 211 766 188 14 0 chrX 14508534 14508672 -148091258 + MER33 DNA MER1_type 3 142 -182 1889 116 0 4 chrX 14508679 14508938 -148090992 - AluSq SINE Alu -7 306 49 23 68 0 0 chrX 14508941 14508985 -148090945 + AT_rich Low_complexity Low_complexity 1 44 0 2201 105 25 17 chrX 14508994 14509347 -148090583 - L1MA5 LINE L1 -689 5611 5256 * 4059 149 30 1 chrX 14509317 14509981 -148089949 + L1MA5 LINE L1 5617 6299 -1 732 182 29 6 chrX 14509984 14510154 -148089776 + MER33 DNA MER1_type 150 323 -1 23 33 0 0 chrX 14510270 14510300 -148089630 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chrX 14511242 14511263 -148088667 + (T)n Simple_repeat Simple_repeat 1 21 0 3953 161 25 5 chrX 14511650 14512257 -148087673 - LTR31 LTR ERV1 0 619 1 557 277 161 8 chrX 14512432 14512681 -148087249 - L2 LINE L2 0 3313 3027 336 274 68 14 chrX 14512900 14513046 -148086884 - L1ME LINE L1 -335 5786 5633 34 42 0 0 chrX 14513054 14513102 -148086828 + AT_rich Low_complexity Low_complexity 1 48 0 2581 52 0 3 chrX 14513282 14513590 -148086340 + AluY SINE Alu 1 307 -4 406 241 44 22 chrX 14514173 14514310 -148085620 - L1MC4 LINE L1 -1 8041 7902 241 345 0 0 chrX 14514284 14514371 -148085559 + L1MC4 LINE L1 6614 6700 -1342 * 249 180 0 0 chrX 14514377 14514427 -148085503 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 392 220 182 8 chrX 14514537 14514669 -148085261 - MER96B DNA MER1_type? 0 417 263 804 283 45 29 chrX 14514940 14515312 -148084618 - L1MC4 LINE L1 -202 7840 7490 2756 141 24 22 chrX 14515540 14516000 -148083930 + LTR38 LTR ERV1 1 461 -95 749 110 0 0 chrX 14516001 14516101 -148083829 - LTR12 LTR ERV1 0 714 615 341 233 11 0 chrX 14516103 14516193 -148083737 - LTR30 LTR ERV1 -79 643 553 1669 161 359 18 chrX 14516195 14516697 -148083233 - pTR5 LTR ERV1 -406 2032 1360 464 132 132 38 chrX 14516697 14516803 -148083127 + LTR38 LTR ERV1 441 556 0 464 268 88 76 chrX 14517627 14517651 -148082279 + L1MC4a LINE L1 5583 5605 -557 1256 180 31 0 chrX 14517651 14517879 -148082051 - L1MD2 LINE L1 -18 6341 6107 464 268 88 76 chrX 14517879 14518173 -148081757 + L1MC4a LINE L1 5605 5908 -254 2008 149 0 0 chrX 14518173 14518468 -148081462 + AluSx SINE Alu 1 295 -17 464 268 88 76 chrX 14518468 14518491 -148081439 + L1MC4a LINE L1 5908 5929 -233 2324 75 3 7 chrX 14518836 14519130 -148080800 - AluSg SINE Alu -17 293 1 270 0 0 0 chrX 14519780 14519810 -148080120 + (TG)n Simple_repeat Simple_repeat 2 31 0 2376 58 10 3 chrX 14521201 14521496 -148078434 - AluSx SINE Alu -15 297 1 2391 91 0 3 chrX 14521775 14522083 -148077847 - AluSg SINE Alu -3 307 1 195 69 0 0 chrX 14522099 14522128 -148077802 + (TA)n Simple_repeat Simple_repeat 1 29 0 1605 82 59 102 chrX 14522128 14522431 -148077499 - AluSx SINE Alu -22 290 1 2652 40 0 0 chrX 14522581 14522878 -148077052 - AluY SINE Alu -2 309 13 760 207 25 71 chrX 14523233 14523306 -148076624 - MER5A DNA MER1_type 0 189 114 2262 97 0 17 chrX 14523306 14523442 -148076488 + AluSx SINE Alu 1 138 -174 2390 87 3 0 chrX 14523442 14523741 -148076189 + AluSp SINE Alu 1 300 -13 2262 97 0 17 chrX 14523741 14523903 -148076027 + AluSx SINE Alu 138 294 -18 760 207 25 71 chrX 14523903 14524027 -148075903 - MER5A DNA MER1_type -75 114 1 195 282 56 0 chrX 14524635 14524706 -148075224 + L2 LINE L2 2986 3060 -212 240 159 214 79 chrX 14525109 14525128 -148074802 - L1ME4a LINE L1 -1 6120 6105 1790 205 86 38 chrX 14525128 14525571 -148074359 + MLT1C LTR MaLR 1 464 -3 240 159 214 79 chrX 14525571 14525677 -148074253 - L1ME4a LINE L1 -16 6105 5978 362 49 85 0 chrX 14525934 14526016 -148073914 + GA-rich Low_complexity Low_complexity 1 89 0 2159 128 0 0 chrX 14526613 14526901 -148073029 + AluSx SINE Alu 1 288 -24 3837 142 38 16 chrX 14527130 14527765 -148072165 + L1MB8 LINE L1 5521 6169 -9 2253 98 3 0 chrX 14529127 14529423 -148070507 - AluSx SINE Alu -13 299 3 2325 109 65 0 chrX 14529535 14529874 -148070056 - MER46B DNA MER2_type 0 236 1 1324 175 31 18 chrX 14530709 14530995 -148068935 - Charlie4a DNA MER1_type -143 365 76 346 238 9 38 chrX 14531431 14531536 -148068394 - MLT1H LTR MaLR -23 526 425 274 227 97 16 chrX 14531631 14531754 -148068176 - MLT1J LTR MaLR -263 146 68 2081 106 21 0 chrX 14532097 14532414 -148067516 - AluSq SINE Alu 0 323 1 2509 48 6 6 chrX 14532736 14533047 -148066883 - AluY SINE Alu 0 311 1 344 113 0 19 chrX 14533047 14533100 -148066830 - MER58B DNA MER1_type -1 340 289 1034 67 0 0 chrX 14533100 14533234 -148066696 + AluY SINE Alu 175 308 -3 1459 188 72 4 chrX 14533234 14533510 -148066420 - MER58B DNA MER1_type -44 297 3 1375 226 97 19 chrX 14534130 14534556 -148065374 - L1ME4a LINE L1 -195 5975 5514 330 176 59 15 chrX 14535145 14535213 -148064717 - MLT1H LTR MaLR -250 299 229 606 277 95 0 chrX 14535523 14535671 -148064259 + MER96 DNA MER1_type? 14 175 0 1501 179 54 56 chrX 14535715 14535914 -148064016 + LTR37B LTR ERV1 77 275 -193 2199 104 0 31 chrX 14535914 14536231 -148063699 - AluSx SINE Alu -4 308 2 1501 179 54 56 chrX 14536231 14536284 -148063646 + LTR37B LTR ERV1 275 327 -141 2349 88 3 3 chrX 14536284 14536590 -148063340 - AluSx SINE Alu -6 306 1 1501 179 54 56 chrX 14536590 14536727 -148063203 + LTR37B LTR ERV1 327 466 -2 297 303 134 7 chrX 14536951 14537093 -148062837 - MIR SINE MIR -54 208 49 826 175 51 28 chrX 14537379 14537556 -148062374 + MER5A DNA MER1_type 1 181 -8 304 205 115 0 chrX 14537573 14537651 -148062279 + L2 LINE L2 3219 3305 -8 2263 54 11 4 chrX 14538523 14538802 -148061128 + AluY SINE Alu 1 312 0 259 32 0 0 chrX 14538802 14538833 -148061097 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 249 297 20 20 chrX 14539237 14539303 -148060627 + MIR SINE MIR 75 143 -119 246 32 0 0 chrX 14539303 14539334 -148060596 + (GGA)n Simple_repeat Simple_repeat 3 33 0 249 297 20 20 chrX 14539334 14539368 -148060562 + MIR SINE MIR 142 175 -87 521 241 9 0 chrX 14541949 14542061 -148057869 - ORSL DNA AcHobo -157 118 6 2356 83 0 7 chrX 14542765 14543066 -148056864 + AluY SINE Alu 1 299 -12 408 271 11 72 chrX 14543786 14543967 -148055963 + MER5B DNA MER1_type 7 176 -2 1098 160 91 0 chrX 14544101 14544288 -148055642 - MER20 DNA MER1_type 0 219 16 861 177 45 61 chrX 14545671 14545697 -148054233 - MER3 DNA MER1_type -4 205 180 1151 175 32 23 chrX 14545697 14545914 -148054016 + MER20 DNA MER1_type 1 219 0 861 177 45 61 chrX 14545914 14546085 -148053845 - MER3 DNA MER1_type -29 180 11 280 361 25 16 chrX 14546745 14546867 -148053063 - L2 LINE L2 -1 3312 3190 288 253 187 11 chrX 14547889 14547980 -148051950 - MIR SINE MIR -110 152 46 2505 174 80 67 chrX 14548465 14549079 -148050851 - MLT1E3 LTR MaLR 0 624 3 2283 95 0 0 chrX 14549154 14549450 -148050480 - AluSx SINE Alu -16 296 1 813 246 6 0 chrX 14549528 14549703 -148050227 - MIR SINE MIR -8 254 79 1153 277 173 38 chrX 14551839 14552464 -148047466 - L2 LINE L2 -1940 1374 666 2923 91 5 2 chrX 14552488 14552884 -148047046 + L1MA3 LINE L1 5462 5858 -447 850 56 0 0 chrX 14552907 14553014 -148046916 - AluSg/x SINE Alu 0 309 203 319 284 45 97 chrX 14553020 14553133 -148046797 - L2 LINE L2 -2714 600 496 1077 243 14 0 chrX 14553133 14553351 -148046579 + MER58A DNA MER1_type 1 221 -3 319 284 45 97 chrX 14553351 14553392 -148046538 - L2 LINE L2 -2818 496 454 1253 160 24 0 chrX 14554357 14554563 -148045367 + MER2 DNA MER2_type 1 211 -134 2439 37 0 0 chrX 14554675 14554947 -148044983 - AluY SINE Alu -19 292 21 23 0 0 0 chrX 14555223 14555246 -148044684 + AT_rich Low_complexity Low_complexity 1 23 0 864 262 9 14 chrX 14556106 14556316 -148043614 + MER63A DNA MER1_type 2 210 0 1702 97 4 0 chrX 14556480 14556706 -148043224 - AluSg/x SINE Alu -12 300 74 643 118 0 0 chrX 14557011 14557096 -148042834 + AluJ/FLAM SINE Alu 2 86 -226 4544 129 15 122 chrX 14557244 14558789 -148041141 + pTR5 LTR ERV1 742 2606 0 194 268 155 31 chrX 14558897 14558994 -148040936 + MER5B DNA MER1_type 1 109 -69 292 232 119 65 chrX 14559716 14559985 -148039945 - L2 LINE L2 0 3313 3072 2135 96 0 0 chrX 14560280 14560551 -148039379 - AluSg SINE Alu -15 295 25 25 0 0 0 chrX 14560560 14560585 -148039345 + AT_rich Low_complexity Low_complexity 1 25 0 316 263 153 29 chrX 14561022 14561159 -148038771 - L2 LINE L2 -349 2965 2812 1086 207 52 41 chrX 14561262 14561438 -148038492 + Charlie4 DNA MER1_type 5 187 -1774 1767 170 0 23 chrX 14561438 14561744 -148038186 - AluJo SINE Alu -13 299 1 1086 207 52 41 chrX 14561744 14561857 -148038073 + Charlie4 DNA MER1_type 187 297 -1664 656 247 52 80 chrX 14561902 14562290 -148037640 + Charlie4 DNA MER1_type 1438 1814 -147 1032 214 48 14 chrX 14563017 14563227 -148036703 + MER20 DNA MER1_type 1 217 -2 302 260 60 0 chrX 14564233 14564333 -148035597 + L2 LINE L2 2133 2238 -1076 243 296 99 47 chrX 14564298 14564470 -148035460 - L2 LINE L2 -1339 1975 1795 * 395 250 0 62 chrX 14565339 14565467 -148034463 + LTR33A LTR ERVL 404 523 0 1914 196 66 92 chrX 14566309 14566841 -148033089 - MLT2B1 LTR ERVL 0 520 3 28 0 0 0 chrX 14567138 14567166 -148032764 + AT_rich Low_complexity Low_complexity 1 28 0 788 33 0 0 chrX 14567166 14567257 -148032673 - L1MA1 LINE L1 0 6302 6212 187 288 137 65 chrX 14568010 14568149 -148031781 - L2 LINE L2 -4 3309 3161 326 355 95 35 chrX 14568538 14569085 -148030845 - L2 LINE L2 -583 2731 2152 268 336 126 7 chrX 14569100 14569243 -148030687 + L2 LINE L2 2079 2238 -1076 210 293 136 36 chrX 14569241 14569381 -148030549 - L2 LINE L2 -1366 1948 1795 * 273 280 110 34 chrX 14570510 14570628 -148029302 - L2 LINE L2 0 3272 3146 21 0 0 0 chrX 14570726 14570747 -148029183 + AT_rich Low_complexity Low_complexity 1 21 0 2163 93 7 0 chrX 14570754 14571055 -148028875 + AluSq SINE Alu 3 305 0 1124 119 0 0 chrX 14571055 14571233 -148028697 + AluSg/x SINE Alu 133 310 0 863 266 82 0 chrX 14571234 14571467 -148028463 - MIR SINE MIR -8 254 3 295 236 9 9 chrX 14571501 14571611 -148028319 + (TCCA)n Simple_repeat Simple_repeat 3 112 0 993 290 63 33 chrX 14573006 14573403 -148026527 + MLT1J2 LTR MaLR 40 448 -2 276 317 37 49 chrX 14573535 14573699 -148026231 - MER5A DNA MER1_type -21 168 7 472 344 27 27 chrX 14574851 14575072 -148024858 - MIR SINE MIR -13 249 29 553 273 54 44 chrX 14575129 14575334 -148024596 - MIR SINE MIR -55 207 1 1731 169 12 19 chrX 14576066 14576391 -148023539 + MER33 DNA MER1_type 1 323 -1 280 347 130 14 chrX 14576406 14576622 -148023308 + MIR SINE MIR 22 262 0 246 275 25 83 chrX 14576642 14576762 -148023168 + HAL1 LINE L1 1545 1657 -850 219 69 0 0 chrX 14576820 14576849 -148023081 + (GA)n Simple_repeat Simple_repeat 1 29 0 30 45 0 0 chrX 14577070 14577114 -148022816 + AT_rich Low_complexity Low_complexity 1 44 0 260 297 118 59 chrX 14577156 14578488 -148021442 + L1MDa LINE L1 2390 3642 -2898 2540 68 3 10 chrX 14578488 14578799 -148021131 + AluSc SINE Alu 1 309 0 260 297 118 59 chrX 14578799 14579052 -148020878 + L1MDa LINE L1 3642 3879 -2661 345 62 0 0 chrX 14579052 14579100 -148020830 + (CA)n Simple_repeat Simple_repeat 1 48 0 260 297 118 59 chrX 14579100 14579331 -148020599 + L1MDa LINE L1 3879 4323 -2217 737 294 45 88 chrX 14579420 14579690 -148020240 + L1MDa LINE L1 4529 4809 -1731 2166 103 7 7 chrX 14579690 14580000 -148019930 + AluSg SINE Alu 1 310 0 737 294 45 88 chrX 14580000 14580021 -148019909 + L1MDa LINE L1 4809 4829 -1711 207 0 0 0 chrX 14580021 14580044 -148019886 + (CAA)n Simple_repeat Simple_repeat 1 23 0 737 294 45 88 chrX 14580044 14580476 -148019454 + L1MDa LINE L1 4829 5222 -1318 31 0 0 0 chrX 14580610 14580641 -148019289 + AT_rich Low_complexity Low_complexity 1 31 0 1937 149 0 0 chrX 14580642 14580951 -148018979 + AluSx SINE Alu 1 309 0 1347 170 18 0 chrX 14581177 14581395 -148018535 + Tigger3(Golem) DNA MER2_type 2806 3027 -2 1052 164 53 43 chrX 14581551 14581758 -148018172 + MER3 DNA MER1_type 1 209 0 768 295 94 60 chrX 14581814 14582197 -148017733 - MLT1I LTR MaLR -13 396 1 854 321 62 25 chrX 14583196 14583551 -148016379 - MER90 LTR ERV1 -7 568 201 2081 83 10 56 chrX 14583880 14584182 -148015748 + AluSc SINE Alu 1 288 -21 276 290 49 91 chrX 14584426 14584764 -148015166 - L2 LINE L2 -260 3053 2675 961 232 5 31 chrX 14585689 14585913 -148014017 - MER20 DNA MER1_type -1 218 1 342 0 0 0 chrX 14586191 14586229 -148013701 + (TG)n Simple_repeat Simple_repeat 2 39 0 989 226 19 14 chrX 14586852 14587060 -148012870 + MIR SINE MIR 9 217 -45 348 24 0 0 chrX 14587284 14587325 -148012605 + (TG)n Simple_repeat Simple_repeat 2 42 0 405 344 15 20 chrX 14587395 14587590 -148012340 - MIR SINE MIR -54 208 15 1154 113 0 6 chrX 14588860 14589020 -148010910 + THE1B LTR MaLR 1 159 -205 4393 61 2 0 chrX 14589020 14589559 -148010371 + HERVL LTR ERVL 2684 3223 -2431 6940 102 11 0 chrX 14589559 14590503 -148009427 + THE1B-int LTR MaLR 627 1580 0 2462 113 17 3 chrX 14590506 14590851 -148009079 + THE1B LTR MaLR 15 364 0 605 146 219 0 chrX 14591529 14591652 -148008278 + MER20 DNA MER1_type 9 158 -61 * 1222 117 5 27 chrX 14591650 14591838 -148008092 + MLT1D LTR MaLR 322 505 0 233 265 24 12 chrX 14591910 14591993 -148007937 + L1ME LINE L1 5429 5512 -652 308 393 38 23 chrX 14592043 14592289 -148007641 + L1ME LINE L1 5588 5840 -330 1805 151 0 25 chrX 14592289 14592567 -148007363 + AluJo SINE Alu 3 273 -39 308 393 38 23 chrX 14592567 14592585 -148007345 + L1ME LINE L1 5840 5856 -314 2119 37 0 19 chrX 14592697 14592966 -148006964 + L1PA4 LINE L1 5892 6155 0 2579 58 0 3 chrX 14593354 14593666 -148006264 + AluY SINE Alu 1 311 0 322 306 47 72 chrX 14593830 14594023 -148005907 - MIR SINE MIR -55 207 20 495 328 152 42 chrX 14594262 14594550 -148005380 + L3 LINE CR1 1082 1430 -147 294 29 0 0 chrX 14594550 14594585 -148005345 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 495 328 152 42 chrX 14594585 14594705 -148005225 + L3 LINE CR1 1430 1535 -42 198 0 0 0 chrX 14594846 14594868 -148005062 + (TG)n Simple_repeat Simple_repeat 1 22 0 528 45 0 0 chrX 14595854 14595921 -148004009 + (GA)n Simple_repeat Simple_repeat 2 68 0 259 300 33 33 chrX 14596237 14596357 -148003573 + MLT1L LTR MaLR 149 268 -347 268 322 105 23 chrX 14596561 14596732 -148003198 + MLT1L LTR MaLR 431 615 0 468 283 14 28 chrX 14597657 14597802 -148002128 + MIR SINE MIR 111 253 -9 411 255 92 0 chrX 14598372 14598470 -148001460 + MIR SINE MIR 6 112 -150 883 307 93 25 chrX 14599167 14599694 -148000236 + L1MC5 LINE L1 5254 5816 -1992 640 268 26 83 chrX 14599741 14600126 -147999804 + L1MC5 LINE L1 7499 7861 -100 64 14 0 0 chrX 14600653 14600724 -147999206 + AT_rich Low_complexity Low_complexity 1 71 0 415 232 70 37 chrX 14600881 14601141 -147998789 - L1MC5 LINE L1 -143 7899 7604 353 211 0 0 chrX 14601642 14601718 -147998212 - L1MC5 LINE L1 -563 7398 7323 654 308 46 45 chrX 14601739 14602286 -147997644 - L1MC4 LINE L1 -571 7471 6923 859 300 87 4 chrX 14602417 14602694 -147997236 - L1MC4 LINE L1 -1030 7012 6713 318 26 0 0 chrX 14602703 14602742 -147997188 + (CA)n Simple_repeat Simple_repeat 2 40 0 343 247 163 80 chrX 14602861 14603100 -147996830 - L1MC4a LINE L1 -1370 6438 6180 21 0 0 0 chrX 14603109 14603130 -147996800 + AT_rich Low_complexity Low_complexity 1 21 0 5050 158 34 62 chrX 14604702 14605540 -147994390 + L1PB3 LINE L1 4125 4985 -1169 334 21 0 21 chrX 14605540 14605587 -147994343 + MADE1 DNA Mariner 35 80 0 5050 158 34 62 chrX 14605587 14606779 -147993151 + L1PB3 LINE L1 4985 6150 -4 44 20 0 0 chrX 14606848 14606899 -147993031 + AT_rich Low_complexity Low_complexity 1 51 0 2568 45 0 16 chrX 14607169 14607479 -147992451 + AluY SINE Alu 1 305 -6 1840 85 0 0 chrX 14607479 14607713 -147992217 + AluSc SINE Alu 71 306 -3 414 321 65 16 chrX 14608637 14608821 -147991109 + MLT1K LTR MaLR 396 588 0 296 317 42 0 chrX 14608822 14608964 -147990966 + L1MC4a LINE L1 5738 5885 -1923 2108 163 11 3 chrX 14609063 14609424 -147990506 + MER47A DNA MER2_type 2 365 -1 279 0 0 0 chrX 14609435 14609466 -147990464 + (TG)n Simple_repeat Simple_repeat 2 32 0 330 115 0 0 chrX 14610670 14610722 -147989208 + (TG)n Simple_repeat Simple_repeat 2 53 0 1370 217 117 16 chrX 14611894 14612263 -147987667 + L1ME LINE L1 5274 5679 -485 243 308 26 68 chrX 14612678 14612795 -147987135 - L2 LINE L2 -4 3309 3198 1309 209 46 61 chrX 14613232 14613577 -147986353 + MER58B DNA MER1_type 2 341 0 285 135 0 0 chrX 14614313 14614365 -147985565 + (CAT)n Simple_repeat Simple_repeat 3 54 0 251 314 141 33 chrX 14614389 14614568 -147985362 - MIR3 SINE MIR -48 214 12 3258 169 28 3 chrX 14614634 14615248 -147984682 - L1MB2 LINE L1 0 6171 5543 402 289 62 7 chrX 14616493 14616635 -147983295 + MIR SINE MIR 11 146 -62 619 211 312 12 chrX 14616639 14616886 -147983044 - MER5C DNA MER1_type -3 321 1 918 208 62 5 chrX 14616899 14617091 -147982839 + MER58A DNA MER1_type 6 208 -16 216 167 71 0 chrX 14617122 14617164 -147982766 + MIR3 SINE MIR 138 182 -26 183 363 30 30 chrX 14618218 14618353 -147981577 + L2 LINE L2 2344 2478 -836 857 331 41 25 chrX 14618603 14618966 -147980964 + LTR16C LTR ERVL 119 487 -4 644 281 25 46 chrX 14620081 14620277 -147979653 - LTR33 LTR ERVL -308 213 22 500 300 54 61 chrX 14620840 14621153 -147978777 - L2 LINE L2 -90 3223 2913 211 290 48 16 chrX 14621213 14621275 -147978655 + MER5A DNA MER1_type 61 124 -65 1888 213 44 80 chrX 14621552 14622204 -147977726 + MLT1E2 LTR MaLR 1 626 0 942 225 121 70 chrX 14622506 14622879 -147977051 - LTR16A LTR ERVL 0 450 59 1741 130 68 52 chrX 14623184 14623553 -147976377 - THE1C LTR MaLR 0 375 1 293 323 70 28 chrX 14624378 14624663 -147975267 + HAL1 LINE L1 1233 1529 -978 272 245 0 0 chrX 14624729 14624782 -147975148 + MER94 DNA DNA 78 130 -4 519 307 58 33 chrX 14624810 14625139 -147974791 + HAL1 LINE L1 1550 1886 -621 746 221 102 22 chrX 14625330 14625556 -147974374 - MIR SINE MIR 0 262 19 253 240 10 21 chrX 14625962 14626058 -147973872 + HAL1 LINE L1 2270 2364 -143 440 332 28 90 chrX 14626506 14626795 -147973135 + L2 LINE L2 2999 3269 -3 2047 178 21 5 chrX 14628436 14628813 -147971117 - MER82 DNA MER2_type -270 383 1 2330 53 3 7 chrX 14629307 14629652 -147970278 - AluY SINE Alu 0 344 1 953 109 32 18 chrX 14630287 14630450 -147969480 - MER20 DNA MER1_type -44 175 2 524 291 111 5 chrX 14630952 14631151 -147968779 + MIR SINE MIR 2 221 -41 393 121 30 0 chrX 14631222 14631288 -147968642 + LTR37A LTR ERV1 100 167 -259 651 230 173 0 chrX 14631289 14631480 -147968450 + REP3 LTR ERV 339 562 0 1333 237 181 50 chrX 14631677 14632115 -147967815 - MLT1E LTR MaLR 0 593 73 2109 92 0 4 chrX 14632115 14632459 -147967471 - AluSx SINE Alu 0 356 14 1333 237 181 50 chrX 14632459 14632543 -147967387 - MLT1E LTR MaLR -520 73 1 672 265 20 7 chrX 14633232 14633383 -147966547 + MER63A DNA MER1_type 49 201 -9 239 0 0 0 chrX 14633648 14633681 -147966249 + L1PA2 LINE L1 6118 6150 -5 421 267 31 56 chrX 14634022 14634183 -147965747 + MIR SINE MIR 79 235 -27 23 0 0 0 chrX 14634192 14634215 -147965715 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 14634484 14634506 -147965424 + AT_rich Low_complexity Low_complexity 1 22 0 2483 117 36 61 chrX 14634834 14635329 -147964601 - L1MB8 LINE L1 -5 6173 5691 226 386 103 25 chrX 14635690 14636009 -147963921 + L2 LINE L2 2249 2592 -722 258 325 31 56 chrX 14636069 14636229 -147963701 + L2 LINE L2 2949 3104 -168 198 246 18 18 chrX 14636324 14636381 -147963549 + L2 LINE L2 3216 3272 0 336 248 139 57 chrX 14637964 14638194 -147961736 + HAL1 LINE L1 832 1080 -1427 3626 141 7 84 chrX 14638197 14638352 -147961578 + L1MA10 LINE L1 5626 5791 -543 492 99 0 0 chrX 14638352 14638423 -147961507 + (TA)n Simple_repeat Simple_repeat 2 72 0 3626 141 7 84 chrX 14638423 14638992 -147960938 + L1MA10 LINE L1 5791 6294 -40 227 284 202 9 chrX 14639339 14639448 -147960482 - LTR33 LTR ERVL -348 173 44 281 209 86 48 chrX 14639517 14639622 -147960308 - LTR33A LTR ERVL -8 515 407 1844 291 63 9 chrX 14639959 14640338 -147959592 - L2 LINE L2 -141 3172 2815 2590 45 0 3 chrX 14640338 14640649 -147959281 - AluY SINE Alu -1 310 1 1844 291 63 9 chrX 14640649 14641210 -147958720 - L2 LINE L2 -498 2815 2176 743 159 182 23 chrX 14642795 14642971 -147956959 + MER20 DNA MER1_type 16 219 0 516 272 76 48 chrX 14642974 14643697 -147956233 - L1ME LINE L1 -331 5790 5025 267 191 73 15 chrX 14644045 14644113 -147955817 - MIR SINE MIR -64 198 127 2187 119 0 3 chrX 14648009 14648319 -147951611 - AluSq SINE Alu -4 309 1 417 219 25 67 chrX 14648693 14648850 -147951080 - MLT1H LTR MaLR -16 533 403 298 219 0 0 chrX 14649067 14649131 -147950799 - MLT1I LTR MaLR -276 133 70 2455 41 3 38 chrX 14650113 14650429 -147949501 + AluY SINE Alu 1 305 -6 1978 196 146 7 chrX 14650444 14650862 -147949068 + MLT1D LTR MaLR 1 476 -29 442 314 129 0 chrX 14650908 14651235 -147948695 + LTR16C LTR ERVL 114 491 0 2205 123 0 0 chrX 14651451 14651744 -147948186 + AluSx SINE Alu 1 293 -19 4383 144 28 3 chrX 14652642 14652993 -147946937 - L1PB3 LINE L1 -1 6153 5812 486 0 0 0 chrX 14652993 14653047 -147946883 + (TA)n Simple_repeat Simple_repeat 2 55 0 4383 144 28 3 chrX 14653047 14653392 -147946538 - L1PB3 LINE L1 -342 5812 5436 369 0 0 0 chrX 14653392 14653433 -147946497 + (TG)n Simple_repeat Simple_repeat 2 42 0 4383 144 28 3 chrX 14653433 14653452 -147946478 - L1PB3 LINE L1 -718 5436 5419 4797 104 7 93 chrX 14653452 14654173 -147945757 - L1PB1 LINE L1 -15 6136 5505 2299 98 0 10 chrX 14654173 14654478 -147945452 - AluY SINE Alu -9 302 1 4797 104 7 93 chrX 14654478 14654652 -147945278 - L1PB1 LINE L1 -646 5505 5318 30 0 0 0 chrX 14654713 14654743 -147945187 + AT_rich Low_complexity Low_complexity 1 30 0 605 329 46 68 chrX 14654794 14654903 -147945027 + L2 LINE L2 2232 2342 -972 491 155 194 0 chrX 14654903 14655006 -147944924 - FLAM_A SINE Alu -10 123 1 605 329 46 68 chrX 14655006 14655352 -147944578 + L2 LINE L2 2342 2677 -637 322 331 65 7 chrX 14655686 14655840 -147944090 + L1MC4a LINE L1 5769 5931 -1877 223 359 7 28 chrX 14655900 14656042 -147943888 + L2 LINE L2 2748 2886 -428 845 144 50 108 chrX 14656237 14656459 -147943471 + MER3 DNA MER1_type 1 209 0 466 254 111 8 chrX 14656535 14656661 -147943269 + L2 LINE L2 3134 3272 0 194 386 76 14 chrX 14656666 14656876 -147943054 - L2 LINE L2 -511 2803 2581 785 316 58 28 chrX 14656955 14657350 -147942580 - LTR16C LTR ERVL 0 491 85 234 278 111 28 chrX 14657441 14657549 -147942381 - L2 LINE L2 -840 2474 2358 2674 177 51 103 chrX 14657788 14658062 -147941868 + MLT1E1 LTR MaLR 1 288 -366 2142 144 6 18 chrX 14658062 14658403 -147941527 - MER1B DNA MER1_type 0 337 1 2674 177 51 103 chrX 14658403 14658818 -147941112 + MLT1E1 LTR MaLR 288 654 0 334 272 200 0 chrX 14658820 14658945 -147940985 + MIR SINE MIR 12 161 -101 2006 234 45 10 chrX 14659300 14659813 -147940117 - L1ME3A LINE L1 -11 6159 5629 675 193 77 28 chrX 14660239 14660420 -147939510 + MLT1J2 LTR MaLR 23 212 -238 238 299 0 13 chrX 14660472 14660549 -147939381 + MLT1I LTR MaLR 328 403 -6 297 276 86 35 chrX 14660736 14660852 -147939078 - MIR SINE MIR -71 137 16 1027 260 48 0 chrX 14660895 14661145 -147938785 - LTR16C LTR ERVL -9 482 221 1124 156 16 0 chrX 14661146 14661332 -147938598 - MER5A DNA MER1_type 0 189 1 1911 210 14 32 chrX 14661337 14661770 -147938160 - MER99 DNA DNA -1 827 403 1493 240 9 0 chrX 14661883 14662225 -147937705 - MER99 DNA DNA -453 375 31 236 390 17 8 chrX 14662239 14662357 -147937573 - LTR16C LTR ERVL -264 227 109 4398 128 21 53 chrX 14662393 14662771 -147937159 + L1MA7 LINE L1 5470 5858 -433 2773 129 12 14 chrX 14662771 14663198 -147936732 + MSTB LTR MaLR 1 426 0 4398 128 21 53 chrX 14663198 14663668 -147936262 + L1MA7 LINE L1 5858 6291 0 829 169 38 47 chrX 14663724 14663937 -147935993 - L1MB8 LINE L1 -6 6172 5962 207 0 0 0 chrX 14664057 14664080 -147935850 + (T)n Simple_repeat Simple_repeat 1 23 0 1028 137 6 48 chrX 14665168 14665336 -147934594 + AluJb SINE Alu 129 289 -23 590 296 107 35 chrX 14665456 14665867 -147934063 + L1ME4a LINE L1 5412 5850 -271 294 276 41 41 chrX 14666082 14666180 -147933750 + L2 LINE L2 3169 3266 -6 1721 200 66 2 chrX 14667032 14667427 -147932503 + L1MD2 LINE L1 5930 6349 -10 328 299 113 48 chrX 14667609 14667900 -147932030 - L1MC4a LINE L1 -1870 5938 5629 204 373 27 0 chrX 14668488 14668563 -147931367 + MIR SINE MIR 1 77 -185 * 218 211 225 0 chrX 14668547 14668618 -147931312 - MIR SINE MIR -160 102 16 402 287 147 34 chrX 14668654 14669018 -147930912 - MLT1H LTR MaLR -18 531 12 940 272 31 97 chrX 14669256 14669711 -147930219 - MLT1L LTR MaLR 0 615 97 410 204 43 11 chrX 14670937 14671030 -147928900 - MIR SINE MIR -1 261 166 278 185 19 0 chrX 14672631 14672685 -147927245 + L3 LINE CR1 1512 1566 -11 629 195 92 6 chrX 14672739 14672903 -147927027 + L1MC/D LINE L1 5639 5816 -426 207 0 0 0 chrX 14672908 14672931 -147926999 + (TTA)n Simple_repeat Simple_repeat 3 25 0 3433 116 16 0 chrX 14672942 14673453 -147926477 - L1PA16 LINE L1 -8 6158 5640 308 209 11 66 chrX 14673455 14673546 -147926384 + LTR16A1 LTR ERVL 372 457 0 1726 182 24 15 chrX 14673822 14674157 -147925773 + MER58B DNA MER1_type 1 338 -3 703 205 205 12 chrX 14675226 14675392 -147924538 + MIR SINE MIR 9 206 -56 1810 210 41 21 chrX 14675436 14675855 -147924075 + MER63B DNA MER1_type 7 433 -3 1033 145 17 11 chrX 14675923 14676102 -147923828 + MLT2D LTR ERVL 1 180 -234 3951 173 21 19 chrX 14676104 14676873 -147923057 + L1MB8 LINE L1 5404 6173 -5 432 314 144 10 chrX 14677780 14677974 -147921956 + MIR SINE MIR 10 229 -33 238 312 127 21 chrX 14678026 14678215 -147921715 + L2 LINE L2 2611 2819 -495 1538 270 46 15 chrX 14678358 14678771 -147921159 - LTR40a LTR ERVL 0 519 90 585 236 35 23 chrX 14678806 14678980 -147920950 - MER96B DNA MER1_type? -241 176 1 15340 118 28 6 chrX 14679020 14681338 -147918592 - Tigger1 DNA MER2_type -1 2417 50 5790 212 30 6 chrX 14681349 14683049 -147916881 + L1M3f LINE L1 14 1754 -4065 4273 128 169 37 chrX 14683049 14684040 -147915890 + MER11B LTR ERVK 1 1225 -11 412 215 89 103 chrX 14684040 14684398 -147915532 + L1M3f LINE L1 1758 2110 -4218 5623 137 27 36 chrX 14684401 14685468 -147914462 - L1MA7 LINE L1 -43 6248 5190 2319 57 0 10 chrX 14685468 14685768 -147914162 - L1PA7 LINE L1 0 6154 5858 5623 137 27 36 chrX 14685768 14685909 -147914021 - L1MA7 LINE L1 -1101 5190 5049 225 0 0 0 chrX 14686265 14686290 -147913640 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chrX 14686490 14686511 -147913419 + AT_rich Low_complexity Low_complexity 1 21 0 1832 219 50 44 chrX 14686909 14687255 -147912675 + L1ME3 LINE L1 5585 5937 -225 2376 105 0 0 chrX 14687255 14687559 -147912371 + AluSp SINE Alu 1 304 -9 1832 219 50 44 chrX 14687559 14687778 -147912152 + L1ME3 LINE L1 5937 6153 -9 2529 33 0 0 chrX 14688264 14688563 -147911367 + L1PA3 LINE L1 5857 6155 0 2248 108 0 10 chrX 14688886 14689193 -147910737 + AluSg SINE Alu 3 306 -4 2245 110 7 7 chrX 14689245 14689732 -147910198 - AluSg SINE Alu 0 310 1 589 13 26 0 chrX 14689776 14689854 -147910076 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 221 0 0 33 chrX 14691771 14691801 -147908129 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 247 303 45 11 chrX 14691817 14691906 -147908024 + MIR SINE MIR 165 256 -6 229 339 78 26 chrX 14691957 14692072 -147907858 - L2 LINE L2 -3 3269 3149 793 239 18 0 chrX 14692079 14692246 -147907684 + MER5B DNA MER1_type 7 176 -2 197 308 46 15 chrX 14692317 14692382 -147907548 - L2 LINE L2 -476 2838 2772 887 263 35 61 chrX 14692546 14692858 -147907072 + LTR16C LTR ERVL 100 403 -88 818 189 0 123 chrX 14692863 14693107 -147906823 - MER20 DNA MER1_type -5 214 1 423 235 10 0 chrX 14693107 14693199 -147906731 + LTR16C LTR ERVL 396 488 -3 874 183 24 6 chrX 14693598 14693767 -147906163 - MER5B DNA MER1_type 0 178 7 198 143 0 0 chrX 14693829 14693864 -147906066 + (CA)n Simple_repeat Simple_repeat 1 35 0 606 255 137 5 chrX 14693958 14694170 -147905760 - MIR SINE MIR -16 246 7 1673 179 140 19 chrX 14695115 14695544 -147904386 - MLT2B2 LTR ERVL -40 480 1 341 366 11 5 chrX 14695544 14695730 -147904200 - L1MC/D LINE L1 -2185 5623 5437 462 307 26 26 chrX 14695755 14695983 -147903947 - L1MC/D LINE L1 -762 5384 5157 649 229 66 16 chrX 14696138 14696321 -147903609 - HsTC2 DNA Tc2 -1092 806 615 641 133 37 0 chrX 14696452 14696764 -147903166 + (TA)n Simple_repeat Simple_repeat 1 323 0 264 56 74 19 chrX 14696795 14696849 -147903081 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 187 146 36 0 chrX 14696889 14696944 -147902986 + (TA)n Simple_repeat Simple_repeat 2 58 0 376 263 76 36 chrX 14697135 14697385 -147902545 + L2 LINE L2 3000 3305 -8 2125 177 55 2 chrX 14697510 14697945 -147901985 + L1MB8 LINE L1 5581 6038 -140 772 143 0 7 chrX 14698044 14698191 -147901739 + L1MB8 LINE L1 6028 6173 -5 867 254 36 14 chrX 14698332 14698611 -147901319 + HsTC2 DNA Tc2 300 584 -1314 689 307 125 4 chrX 14698818 14699098 -147900832 + LTR16C LTR ERVL 18 331 -160 1190 146 26 0 chrX 14699316 14699508 -147900422 - MER20 DNA MER1_type 0 219 23 2335 119 14 24 chrX 14699955 14700324 -147899606 + MLT1A1 LTR MaLR 1 365 0 268 278 9 104 chrX 14700458 14700670 -147899260 + MLT1K LTR MaLR 397 588 0 1964 123 10 10 chrX 14700708 14701000 -147898930 - AluJb SINE Alu -20 292 1 22 0 0 0 chrX 14701132 14701154 -147898776 + AT_rich Low_complexity Low_complexity 1 22 0 7898 13 0 0 chrX 14701163 14702759 -147897171 + L1PA3 LINE L1 4560 6155 0 626 209 9 9 chrX 14702779 14702889 -147897041 + FLAM_A SINE Alu 1 110 -32 1415 153 48 8 chrX 14702982 14703230 -147896700 - AluJb SINE Alu -10 302 45 2227 74 0 3 chrX 14703444 14703792 -147896138 + AluY SINE Alu 1 347 0 2367 116 16 5 chrX 14703804 14704176 -147895754 - L1PA16 LINE L1 -9 6157 5782 1827 196 14 8 chrX 14704679 14705042 -147894888 + MLT1A1 LTR MaLR 1 365 0 2579 139 4 60 chrX 14707737 14707778 -147892152 - MSTC LTR MaLR 0 428 386 2308 115 3 3 chrX 14707778 14708090 -147891840 + AluSx SINE Alu 1 312 0 2579 139 4 60 chrX 14708090 14708501 -147891429 - MSTC LTR MaLR -42 386 1 320 252 137 7 chrX 14709405 14709544 -147890386 - L2 LINE L2 -45 3268 3112 1760 125 3 71 chrX 14709631 14709928 -147890002 + AluJb SINE Alu 33 309 -3 2058 147 28 14 chrX 14710146 14710506 -147889424 + MLT1A1 LTR MaLR 1 365 0 384 157 67 11 chrX 14710595 14710684 -147889246 - MER53 DNA DNA -94 95 2 262 278 0 14 chrX 14710697 14710769 -147889161 + LTR16C LTR ERVL 419 489 -2 487 267 45 40 chrX 14710914 14711123 -147888807 - MIR SINE MIR -34 228 16 2237 115 0 0 chrX 14711322 14711617 -147888313 + AluSx SINE Alu 1 295 -17 328 196 56 37 chrX 14711626 14711733 -147888197 - L1MC5 LINE L1 -48 7913 7805 724 178 20 14 chrX 14711790 14711936 -147887994 + MLT1D LTR MaLR 45 191 -314 528 68 75 7 chrX 14712046 14712193 -147887737 + (TA)n Simple_repeat Simple_repeat 2 158 0 973 91 0 0 chrX 14712228 14712349 -147887581 - AluY SINE Alu -190 121 1 254 32 0 0 chrX 14712397 14712428 -147887502 + HERVL LTR ERVL 3137 3167 -2487 656 65 71 12 chrX 14712432 14712600 -147887330 + (TA)n Simple_repeat Simple_repeat 2 179 0 543 248 0 0 chrX 14712602 14712715 -147887215 - FLAM_C SINE Alu -30 113 1 363 248 71 20 chrX 14713347 14713558 -147886372 - L2 LINE L2 0 3272 3042 1120 266 101 43 chrX 14713594 14714128 -147885802 + MLT1L LTR MaLR 39 603 -12 835 286 47 0 chrX 14714911 14715145 -147884785 - MIR SINE MIR 0 262 18 504 295 137 24 chrX 14715881 14716210 -147883720 + MLT1L LTR MaLR 1 366 -249 231 239 211 0 chrX 14716242 14716351 -147883579 + MLT1L LTR MaLR 459 590 -25 24 32 0 0 chrX 14717054 14717085 -147882845 + AT_rich Low_complexity Low_complexity 1 31 0 295 73 0 0 chrX 14717467 14717508 -147882422 - MADE1 DNA Mariner 0 80 40 983 265 32 29 chrX 14717558 14717905 -147882025 + LTR16C LTR ERVL 144 491 0 1367 331 122 30 chrX 14717913 14719083 -147880847 + L2 LINE L2 1795 3068 -204 1991 144 30 62 chrX 14719238 14719393 -147880537 + MLT1B LTR MaLR 1 159 -231 1675 116 8 21 chrX 14719393 14719635 -147880295 - AluJb SINE Alu -10 302 64 1991 144 30 62 chrX 14719635 14719882 -147880048 + MLT1B LTR MaLR 159 390 0 186 256 0 0 chrX 14721337 14721376 -147878554 - L2 LINE L2 -10 3303 3265 1028 178 27 32 chrX 14721609 14721794 -147878136 - MER5A DNA MER1_type -5 184 1 182 211 53 0 chrX 14722009 14722047 -147877883 - MIR SINE MIR 0 262 223 338 270 162 60 chrX 14722054 14722239 -147877691 - MIR SINE MIR 0 262 59 21 0 0 0 chrX 14722239 14722260 -147877670 + AT_rich Low_complexity Low_complexity 1 21 0 331 206 113 21 chrX 14722333 14722430 -147877500 - MIR SINE MIR -71 191 86 936 305 35 35 chrX 14722873 14723276 -147876654 + LTR16A LTR ERVL 30 432 -18 192 179 0 0 chrX 14723653 14723692 -147876238 + CT-rich Low_complexity Low_complexity 4 42 0 200 200 0 0 chrX 14723694 14723729 -147876201 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 660 191 20 0 chrX 14724215 14724362 -147875568 + L1MB2 LINE L1 6020 6169 -2 21 0 0 0 chrX 14724362 14724383 -147875547 + AT_rich Low_complexity Low_complexity 1 21 0 721 174 36 7 chrX 14724383 14724521 -147875409 - MLT1A2 LTR MaLR -51 323 182 1780 160 4 7 chrX 14724555 14724836 -147875094 + AluJb SINE Alu 1 280 -32 291 28 0 0 chrX 14724843 14724879 -147875051 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2347 56 0 3 chrX 14725789 14726075 -147873855 + AluY SINE Alu 1 285 -26 192 77 0 0 chrX 14726088 14726114 -147873816 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 971 266 174 38 chrX 14726467 14727207 -147872723 - HAL1 LINE L1 -101 2406 1566 3531 172 23 15 chrX 14727214 14727965 -147871965 - L1MA8 LINE L1 -3 6288 5532 774 115 0 0 chrX 14727969 14728091 -147871839 - L1MA8 LINE L1 -860 5286 5165 * 5167 253 38 18 chrX 14728088 14730579 -147869351 - L1 LINE L1 -3534 2794 252 37174 38 2 0 chrX 14730682 14736715 -147863215 - L1PA4 LINE L1 -107 6048 1 980 241 14 9 chrX 14736847 14737067 -147862863 - MER58A DNA MER1_type 0 224 4 346 289 103 51 chrX 14737588 14737744 -147862186 - MIR SINE MIR -79 183 20 370 280 72 0 chrX 14737820 14737945 -147861985 - MIR SINE MIR -17 245 112 1673 196 13 48 chrX 14738603 14738981 -147860949 + MLT1A1 LTR MaLR 1 365 0 903 200 43 85 chrX 14739314 14739498 -147860432 - L1MD3 LINE L1 -10 7985 7795 2239 119 14 14 chrX 14739498 14739852 -147860078 - THE1A LTR MaLR -1 354 1 12156 79 4 6 chrX 14739852 14741435 -147858495 - THE1A-int LTR MaLR 0 1580 1 2286 84 47 12 chrX 14741435 14741778 -147858152 - THE1A LTR MaLR 0 355 1 903 200 43 85 chrX 14741778 14741896 -147858034 - L1MD3 LINE L1 -197 7798 7694 253 352 57 29 chrX 14741896 14742001 -147857929 - MIR SINE MIR -147 115 8 232 283 28 19 chrX 14742024 14742130 -147857800 + MLT1J1 LTR MaLR 340 446 0 296 250 119 0 chrX 14743217 14743301 -147856629 + LTR16B LTR ERVL 1 94 -370 1383 245 73 36 chrX 14743382 14744095 -147855835 - Charlie7 DNA MER1_type -447 2165 1427 323 296 139 0 chrX 14744096 14744268 -147855662 - Charlie7 DNA MER1_type -2295 317 122 669 330 37 77 chrX 14744383 14744480 -147855450 + L1ME LINE L1 227 326 -5793 2183 98 0 0 chrX 14744480 14744756 -147855174 + AluSc SINE Alu 1 276 -33 669 330 37 77 chrX 14744756 14745149 -147854781 + L1ME LINE L1 326 697 -5422 1400 264 120 2 chrX 14745150 14745615 -147854315 + LTR33 LTR ERVL 2 521 0 463 293 25 73 chrX 14745655 14746313 -147853617 + L1ME LINE L1 717 1563 -4747 383 274 77 46 chrX 14746466 14746507 -147853423 + L1ME LINE L1 5278 5316 -829 2457 96 8 11 chrX 14746507 14746863 -147853067 - THE1A LTR MaLR 0 355 1 383 274 77 46 chrX 14746863 14747206 -147852724 + L1ME LINE L1 5316 5593 -552 1952 106 66 17 chrX 14747734 14748083 -147851847 + THE1C LTR MaLR 8 373 -2 344 294 43 0 chrX 14749079 14749171 -147850759 - L2 LINE L2 -11 3302 3207 204 97 0 0 chrX 14749627 14749658 -147850272 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 1024 182 57 54 chrX 14750577 14750866 -147849064 - MER47B DNA MER2_type 0 418 26 231 146 0 0 chrX 14750874 14750915 -147849015 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 963 223 117 31 chrX 14751084 14751724 -147848206 - LTR50 LTR ERVL -16 779 2 313 291 90 38 chrX 14752148 14752437 -147847493 + L1M4 LINE L1 4075 4378 -1768 847 269 4 18 chrX 14752606 14752833 -147847097 + MER58A DNA MER1_type 1 224 0 499 168 0 28 chrX 14753773 14753880 -147846050 + MLT1C LTR MaLR 362 465 -2 315 0 0 0 chrX 14754059 14754094 -147845836 + (CA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chrX 14755194 14755217 -147844713 + AT_rich Low_complexity Low_complexity 1 23 0 358 254 107 45 chrX 14755406 14755583 -147844347 - L1ME4a LINE L1 -3 6118 5931 207 314 0 0 chrX 14756461 14756547 -147843383 + T-rich Low_complexity Low_complexity 1 86 0 1199 108 34 0 chrX 14756896 14757072 -147842858 - L1PA10 LINE L1 -2 6166 5985 5556 101 49 3 chrX 14757072 14758313 -147841617 - L1PA10 LINE L1 -418 5750 4464 672 271 37 7 chrX 14758323 14758596 -147841334 - L1ME4a LINE L1 -239 5882 5602 1719 185 66 46 chrX 14758679 14759132 -147840798 - L1ME3 LINE L1 -101 6061 5600 482 284 102 10 chrX 14759798 14759995 -147839935 + MIR SINE MIR 21 235 -27 267 349 118 33 chrX 14760250 14760402 -147839528 + L2 LINE L2 3101 3265 -7 954 185 11 6 chrX 14761227 14761405 -147838525 + MER63A DNA MER1_type 1 179 -31 1207 229 88 37 chrX 14762003 14762435 -147837495 + LTR16A1 LTR ERVL 4 457 0 21 0 0 0 chrX 14763018 14763039 -147836891 + AT_rich Low_complexity Low_complexity 1 21 0 611 229 74 57 chrX 14763164 14763643 -147836287 + LTR33A LTR ERVL 1 495 -28 1053 143 68 13 chrX 14763722 14763959 -147835971 + MER33 DNA MER1_type 61 310 -14 1671 204 232 17 chrX 14764304 14764825 -147835105 - MER92B LTR ERV1 0 636 4 195 69 0 0 chrX 14765764 14765793 -147834137 + (GA)n Simple_repeat Simple_repeat 2 30 0 322 266 78 0 chrX 14766408 14766536 -147833394 - L1ME4a LINE L1 -31 6090 5953 253 216 21 0 chrX 14766604 14766662 -147833268 - MER5B DNA MER1_type 0 178 126 893 148 49 12 chrX 14766729 14766891 -147833039 + MER5B DNA MER1_type 7 174 -4 714 194 0 8 chrX 14766955 14767079 -147832851 + FLAM_A SINE Alu 4 126 -7 707 226 34 34 chrX 14767390 14767567 -147832363 + MER5B DNA MER1_type 1 177 -1 7264 40 16 0 chrX 14767595 14768543 -147831387 - L1PA6 LINE L1 -3 6151 5207 555 239 159 6 chrX 14768548 14768711 -147831219 + MER5A DNA MER1_type 1 188 -1 275 83 0 0 chrX 14768916 14768964 -147830966 - L1MA3 LINE L1 0 6305 6258 1800 121 62 64 chrX 14769369 14769824 -147830106 - THE1C LTR MaLR 0 428 1 258 263 26 13 chrX 14770405 14770481 -147829449 - MIR SINE MIR -87 175 99 476 285 136 8 chrX 14771506 14771748 -147828182 - L2 LINE L2 -91 3222 2950 1769 159 37 62 chrX 14771755 14771798 -147828132 + LTR37A LTR ERV1 5 48 -378 981 204 18 36 chrX 14771798 14772018 -147827912 + MER20 DNA MER1_type 1 216 -3 1769 159 37 62 chrX 14772018 14772407 -147827523 + LTR37A LTR ERV1 48 426 0 881 215 100 51 chrX 14772493 14772804 -147827126 + MLT1A1 LTR MaLR 1 326 -39 374 298 7 28 chrX 14772805 14772946 -147826984 - L2 LINE L2 -674 2640 2503 1115 185 77 7 chrX 14772948 14773235 -147826695 + MER33 DNA MER1_type 1 307 -17 239 287 61 61 chrX 14773541 14773656 -147826274 + MIR3 SINE MIR 12 126 -82 212 248 147 64 chrX 14773688 14773797 -147826133 + L2 LINE L2 3154 3271 -1 256 273 0 15 chrX 14773814 14773880 -147826050 + MIR SINE MIR 86 150 -112 964 237 147 100 chrX 14773880 14774403 -147825527 - MER50 LTR ERV1 -23 711 147 1906 98 9 89 chrX 14774403 14774511 -147825419 - AluSg SINE Alu -2 308 193 2542 78 0 0 chrX 14774511 14774820 -147825110 - AluY SINE Alu -1 310 2 1906 98 9 89 chrX 14774820 14775036 -147824894 - AluSg SINE Alu -117 193 10 964 237 147 100 chrX 14775036 14775191 -147824739 - MER50 LTR ERV1 -587 147 1 190 299 28 84 chrX 14775191 14775256 -147824674 + MIR SINE MIR 146 204 -58 1854 186 79 20 chrX 14775256 14775697 -147824233 - MLT1C LTR MaLR 0 467 1 190 299 28 84 chrX 14775697 14775738 -147824192 + MIR SINE MIR 204 246 -16 464 210 80 0 chrX 14775806 14775906 -147824024 + MER58B DNA MER1_type 203 310 -31 2192 104 7 14 chrX 14775907 14776204 -147823726 - AluSx SINE Alu -17 295 1 606 237 199 6 chrX 14776254 14776410 -147823520 + MER5A DNA MER1_type 4 189 0 228 290 71 13 chrX 14776584 14776739 -147823191 - L1MC/D LINE L1 -1890 5918 5755 3911 22 0 4 chrX 14777317 14777774 -147822156 + L1PA3 LINE L1 5698 6152 -3 30 0 0 0 chrX 14777774 14777804 -147822126 + AT_rich Low_complexity Low_complexity 1 30 0 617 271 81 55 chrX 14778020 14778404 -147821526 - MLT1K LTR MaLR 0 588 195 458 278 272 0 chrX 14778421 14778590 -147821340 - MIR SINE MIR -13 249 35 387 285 52 17 chrX 14779779 14779951 -147819979 + MER5B DNA MER1_type 1 178 0 1629 245 114 16 chrX 14781043 14781575 -147818355 - MER77 LTR ERV1 -5 600 40 197 327 109 55 chrX 14781680 14781900 -147818030 - MIR SINE MIR -17 245 14 213 39 0 0 chrX 14782740 14782766 -147817164 + (A)n Simple_repeat Simple_repeat 1 26 0 996 268 10 3 chrX 14783069 14783364 -147816566 + L1MC4a LINE L1 5619 5915 -1893 2244 112 10 0 chrX 14783396 14783691 -147816239 + AluSg SINE Alu 1 298 -12 21 0 0 0 chrX 14783838 14783859 -147816071 + AT_rich Low_complexity Low_complexity 1 21 0 258 103 0 0 chrX 14783865 14783904 -147816026 + L1MB5 LINE L1 6028 6066 -108 361 236 0 0 chrX 14783909 14783981 -147815949 - MLT1D LTR MaLR -96 409 338 1563 114 20 4 chrX 14783982 14784228 -147815702 + THE1C LTR MaLR 1 250 -125 6269 45 18 21 chrX 14984234 14985053 -147614877 + SVA Other Other 575 1390 0 25 0 0 0 chrX 14985053 14985078 -147614852 + AT_rich Low_complexity Low_complexity 1 25 0 1867 155 0 26 chrX 14985955 14986265 -147613665 - AluJb SINE Alu -10 302 1 3413 191 53 16 chrX 14986297 14986752 -147613178 - L1MA9 LINE L1 -48 6264 5768 441 0 0 0 chrX 14986752 14986801 -147613129 + (TG)n Simple_repeat Simple_repeat 2 50 0 3413 191 53 16 chrX 14986801 14987102 -147612828 - L1MA9 LINE L1 -544 5768 5480 3624 39 0 3 chrX 14987312 14987750 -147612180 - L1PA7 LINE L1 -20 6134 5700 444 271 17 68 chrX 14987748 14987984 -147611946 - L1MC5 LINE L1 -34 7927 7704 * 2159 79 10 39 chrX 14987985 14988290 -147611640 - AluSc SINE Alu -13 296 1 539 229 42 36 chrX 14988401 14988567 -147611363 - L1MC5 LINE L1 -14 7947 7781 1249 140 7 101 chrX 14988614 14988833 -147611097 - L1MB5 LINE L1 -8 6166 5977 1543 188 3 42 chrX 14988833 14989141 -147610789 + AluJo SINE Alu 7 302 -10 1249 140 7 101 chrX 14989141 14989199 -147610731 - L1MB5 LINE L1 -197 5977 5915 2061 216 36 57 chrX 14989207 14989662 -147610268 - L1MC5 LINE L1 -182 7779 7341 1490 146 112 10 chrX 14989662 14989956 -147609974 + MER33 DNA MER1_type 1 324 0 2061 216 36 57 chrX 14989956 14990184 -147609746 - L1MC5 LINE L1 -620 7341 7110 1275 171 23 85 chrX 14990186 14990491 -147609439 + AluJo SINE Alu 20 305 -7 420 218 20 0 chrX 14990504 14990605 -147609325 - L1MC5 LINE L1 -856 7105 7003 1751 148 43 4 chrX 14990635 14990912 -147609018 + AluJb SINE Alu 1 288 -24 4954 73 19 18 chrX 14991016 14991702 -147608228 - SVA Other Other -683 703 17 2453 109 23 0 chrX 14991913 14992262 -147607668 - MER46B DNA MER2_type -4 232 1 1425 203 114 3 chrX 14992593 14992899 -147607031 + MER58B DNA MER1_type 1 340 -1 1667 171 44 0 chrX 14992956 14993231 -147606699 + AluJb SINE Alu 1 287 -25 6097 58 9 5 chrX 14993403 14994165 -147605765 - SVA Other Other 0 1386 622 212 225 0 0 chrX 14994270 14994310 -147605620 + C-rich Low_complexity Low_complexity 1 40 0 637 249 126 52 chrX 14995097 14995462 -147604468 + MLT1J2 LTR MaLR 59 450 0 1714 216 202 6 chrX 14995874 14996384 -147603546 + L1ME3A LINE L1 5551 6160 -10 373 194 207 16 chrX 14996729 14996837 -147603093 + FLAM_A SINE Alu 11 116 -17 658 74 0 3 chrX 14996924 14997155 -147602775 + AluSx SINE Alu 1 300 -10 2305 82 0 17 chrX 14997395 14997688 -147602242 + AluSg SINE Alu 1 288 -22 2363 95 3 0 chrX 14997745 14998051 -147601879 + AluSx SINE Alu 1 307 -5 1260 203 14 17 chrX 14998297 14998593 -147601337 - L1MB8 LINE L1 0 6178 5884 2111 103 10 3 chrX 14998594 14998884 -147601046 - AluSx SINE Alu -19 293 2 2029 116 32 3 chrX 14999497 14999782 -147600148 - AluSq SINE Alu -20 293 1 2212 85 17 17 chrX 14999782 15000074 -147599856 - AluSc SINE Alu -16 293 1 2344 106 0 13 chrX 15000131 15000442 -147599488 - AluSx SINE Alu -5 307 1 2359 96 7 0 chrX 15000522 15000825 -147599105 - AluSg SINE Alu -5 305 1 2258 109 7 0 chrX 15000825 15001129 -147598801 - AluSp SINE Alu -2 311 6 2307 147 67 21 chrX 15001170 15001493 -147598437 + L1M4 LINE L1 5226 5579 -599 1501 179 37 24 chrX 15001493 15001789 -147598141 + AluJo SINE Alu 1 300 -12 2307 147 67 21 chrX 15001789 15001938 -147597992 + L1M4 LINE L1 5579 5720 -458 2448 58 7 0 chrX 15001939 15002231 -147597699 + AluY SINE Alu 1 294 -17 1749 141 6 42 chrX 15002603 15002916 -147597014 - AluY SINE Alu -9 302 1 1569 179 64 67 chrX 15003034 15003425 -147596505 + L1MC4 LINE L1 7515 7904 -138 3275 135 146 8 chrX 15003448 15004050 -147595880 + LTR34 LTR ERV1 13 697 -2 192 40 0 0 chrX 15004050 15004075 -147595855 + (GA)n Simple_repeat Simple_repeat 2 26 0 519 173 78 2 chrX 15004083 15004201 -147595729 + L1MC4 LINE L1 7859 8036 -6 1730 176 150 21 chrX 15004394 15004672 -147595258 + MLT1F1 LTR MaLR 138 479 -88 4008 125 17 40 chrX 15004672 15005322 -147594608 + MER41B LTR ERV1 1 635 0 1730 176 150 21 chrX 15005322 15005424 -147594506 + MLT1F1 LTR MaLR 479 567 0 3161 129 23 0 chrX 15005902 15006383 -147593547 - L1PA16 LINE L1 -9 6157 5666 1201 239 85 31 chrX 15007059 15007482 -147592448 - LTR16A1 LTR ERVL 0 457 12 1095 254 146 23 chrX 15007516 15007914 -147592016 + MLT1J2 LTR MaLR 1 447 -3 246 128 0 0 chrX 15008497 15008536 -147591394 + (CA)n Simple_repeat Simple_repeat 2 40 0 1948 146 20 0 chrX 15008596 15008891 -147591039 - AluJo SINE Alu -11 301 1 2056 119 17 0 chrX 15008920 15009213 -147590717 + AluSg SINE Alu 1 298 -12 392 179 11 0 chrX 15009450 15009504 -147590426 + GA-rich Low_complexity Low_complexity 1 58 -38 2852 86 0 0 chrX 15009504 15009866 -147590064 - THE1B LTR MaLR -2 362 1 392 179 11 0 chrX 15009866 15009906 -147590024 + GA-rich Low_complexity Low_complexity 58 96 0 1134 126 11 49 chrX 15010225 15010354 -147589576 - Tigger3(Golem) DNA MER2_type 0 3038 2916 2356 127 50 75 chrX 15010354 15010759 -147589171 + MER65A LTR ERV1 1 395 -50 1853 164 3 25 chrX 15010759 15011076 -147588854 - AluJb SINE Alu -2 310 1 2356 127 50 75 chrX 15011076 15011126 -147588804 + MER65A LTR ERV1 395 445 0 1134 126 11 49 chrX 15011126 15011179 -147588751 - Tigger3(Golem) DNA MER2_type -122 2916 2863 2555 142 47 0 chrX 15011181 15011590 -147588340 - MSTA LTR MaLR 0 428 1 10097 154 22 3 chrX 15011590 15013210 -147586720 - MSTA-int LTR MaLR 0 1651 1 361 214 38 69 chrX 15014222 15014353 -147585577 + MIR SINE MIR 93 219 -43 2059 149 10 0 chrX 15014613 15014922 -147585008 - AluSx SINE Alu 0 312 1 847 146 0 42 chrX 15014939 15015083 -147584847 - FLAM_C SINE Alu -5 138 1 4775 113 38 11 chrX 15015617 15015796 -147584134 - L1MA4 LINE L1 -4 6296 6123 2037 137 10 3 chrX 15015796 15016089 -147583841 + AluJb SINE Alu 1 295 -17 4775 113 38 11 chrX 15016089 15016672 -147583258 - L1MA4 LINE L1 -177 6123 5513 5588 126 11 7 chrX 15016679 15017666 -147582264 - L1MA4 LINE L1 -743 5403 4469 412 286 0 13 chrX 15017842 15017996 -147581934 - THE1B LTR MaLR -34 330 179 315 0 0 0 chrX 15020135 15020170 -147579760 + (TGG)n Simple_repeat Simple_repeat 1 35 0 2400 89 0 0 chrX 15020470 15020773 -147579157 - AluSx SINE Alu -9 303 1 4804 128 31 26 chrX 15020781 15021581 -147578349 - L1MC1 LINE L1 0 6333 5530 384 281 42 0 chrX 15021661 15021757 -147578173 - L2 LINE L2 -25 3288 3189 1889 154 14 3 chrX 15021832 15022125 -147577805 + AluJo SINE Alu 1 296 -16 1478 154 62 26 chrX 15022450 15022566 -147577364 + AluJo SINE Alu 1 111 -197 540 0 0 0 chrX 15022566 15022626 -147577304 + (CA)n Simple_repeat Simple_repeat 2 61 0 1478 154 62 26 chrX 15022626 15022807 -147577123 + AluJo SINE Alu 111 308 0 2319 65 7 7 chrX 15023147 15023453 -147576477 - L1PA7 LINE L1 -4 6150 5845 1528 111 202 4 chrX 15023907 15024160 -147575770 + AluSq SINE Alu 1 303 -10 447 35 0 0 chrX 15024160 15024217 -147575713 + (CA)n Simple_repeat Simple_repeat 2 58 0 204 219 0 0 chrX 15024580 15024621 -147575309 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1891 161 3 22 chrX 15025006 15025323 -147574607 - AluJb SINE Alu -1 311 1 440 296 28 23 chrX 15025333 15025509 -147574421 - L1MC5 LINE L1 -36 7925 7749 2366 94 0 7 chrX 15025869 15026176 -147573754 - AluSx SINE Alu -7 305 1 319 253 121 10 chrX 15026304 15026403 -147573527 + MER81 DNA DNA 3 112 -2 1808 206 228 8 chrX 15026417 15026903 -147573027 - MLT1E LTR MaLR 0 593 1 589 148 71 90 chrX 15027197 15027352 -147572578 + Charlie4 DNA MER1_type 1 152 -1809 1497 156 0 0 chrX 15027353 15027578 -147572352 - AluJb SINE Alu 0 312 88 1886 162 0 7 chrX 15028190 15028487 -147571443 + AluSx SINE Alu 1 295 -17 1076 197 10 5 chrX 15028826 15029019 -147570911 - MER20 DNA MER1_type -3 216 23 292 163 23 70 chrX 15029071 15029157 -147570773 - MIR SINE MIR -109 153 72 566 246 99 53 chrX 15029531 15029918 -147570012 - LTR33 LTR ERVL -110 413 1 1658 178 17 7 chrX 15030166 15030458 -147569472 - AluJb SINE Alu -17 295 1 9071 176 27 28 chrX 15030744 15031143 -147568787 + L1M2 LINE L1 3502 3900 -2412 1901 153 3 13 chrX 15031143 15031451 -147568479 + AluJo SINE Alu 1 305 -7 9071 176 27 28 chrX 15031451 15033160 -147566770 + L1M2 LINE L1 3900 5606 -706 904 118 0 16 chrX 15033526 15033653 -147566277 - FLAM_C SINE Alu -18 125 1 187 206 0 0 chrX 15035088 15035122 -147564808 - L2 LINE L2 -15 3298 3265 2291 81 7 7 chrX 15035183 15035481 -147564449 - AluY SINE Alu -13 298 1 2224 103 3 0 chrX 15035541 15035851 -147564079 - AluY SINE Alu 0 311 1 2346 59 7 19 chrX 15036120 15036427 -147563503 + AluY SINE Alu 1 303 -8 2486 60 0 10 chrX 15036468 15036766 -147563164 + AluY SINE Alu 1 295 -16 241 299 0 0 chrX 15037032 15037099 -147562831 + A-rich Low_complexity Low_complexity 4 70 0 455 200 10 30 chrX 15037243 15037343 -147562587 - MER5A DNA MER1_type -83 106 9 2352 76 3 0 chrX 15037608 15037896 -147562034 + AluSp SINE Alu 21 309 -4 326 296 53 35 chrX 15038305 15038474 -147561456 - L1M4 LINE L1 -1437 4709 4538 1278 199 103 7 chrX 15038498 15038769 -147561161 + AluJo SINE Alu 1 297 -5 853 258 77 67 chrX 15038784 15039047 -147560883 + L1ME LINE L1 4943 5202 -960 2153 105 0 30 chrX 15039047 15039351 -147560579 + AluSg SINE Alu 1 295 -15 853 258 77 67 chrX 15039351 15039930 -147560000 + L1ME LINE L1 5202 5786 -376 554 128 0 43 chrX 15039938 15040032 -147559898 - AluJ/FRAM SINE Alu 0 312 223 692 209 163 0 chrX 15040109 15040281 -147559649 + MER58C DNA MER1_type 16 215 0 509 137 116 0 chrX 15040333 15040428 -147559502 - MER3 DNA MER1_type -1 208 103 2001 116 14 7 chrX 15041062 15041354 -147558576 + AluSp SINE Alu 2 295 -18 1886 107 0 0 chrX 15041357 15041601 -147558329 + AluSq SINE Alu 1 244 -69 261 221 159 97 chrX 15042099 15042244 -147557686 + MIR SINE MIR 36 189 -73 21 0 0 0 chrX 15045147 15045168 -147554762 + AT_rich Low_complexity Low_complexity 1 21 0 504 0 0 0 chrX 15045241 15045297 -147554633 + (TG)n Simple_repeat Simple_repeat 2 57 0 736 205 0 0 chrX 15045298 15045415 -147554515 - FLAM_C SINE Alu -15 118 2 758 222 114 10 chrX 15045434 15045562 -147554368 - L1MC5 LINE L1 -175 7786 7673 1476 146 165 4 chrX 15045562 15045816 -147554114 + AluJo SINE Alu 1 295 -7 758 222 114 10 chrX 15045816 15045993 -147553937 - L1MC5 LINE L1 -288 7673 7449 279 286 89 62 chrX 15046389 15046613 -147553317 - MIR SINE MIR 0 262 33 180 0 0 0 chrX 15048035 15048055 -147551875 + (CA)n Simple_repeat Simple_repeat 2 21 0 577 241 9 0 chrX 15048939 15049051 -147550879 - MER81 DNA DNA 0 114 2 293 169 13 91 chrX 15049164 15049241 -147550689 + MER116 DNA Mariner 1 71 -9 1750 118 53 15 chrX 15049852 15050114 -147549816 + AluJb SINE Alu 6 277 -35 278 323 19 45 chrX 15050580 15050735 -147549195 + MIR3 SINE MIR 40 190 -18 211 255 0 0 chrX 15052208 15052255 -147547675 + MIR SINE MIR 212 258 -4 221 234 159 28 chrX 15052295 15052402 -147547528 + MIR SINE MIR 47 167 -95 598 187 73 20 chrX 15054066 15054216 -147545714 - MER5A DNA MER1_type 0 189 32 2183 89 14 3 chrX 15054346 15054638 -147545292 + AluSg SINE Alu 1 295 -15 2282 82 0 0 chrX 15054780 15055060 -147544870 + AluSc SINE Alu 13 292 -17 370 193 33 31 chrX 15059945 15060059 -147539871 - L1MC4 LINE L1 -3 8039 7860 286 179 119 0 chrX 15060585 15060652 -147539278 + Charlie2a DNA MER1_type 1513 1587 -1275 1876 148 0 0 chrX 15060715 15060992 -147538938 + AluJb SINE Alu 16 292 -20 2130 66 11 11 chrX 15061044 15061317 -147538613 + AluSc SINE Alu 1 273 -36 3830 145 67 26 chrX 15062076 15062760 -147537170 + L1MB7 LINE L1 5457 6168 -16 357 137 51 0 chrX 15063526 15063643 -147536287 + (TA)n Simple_repeat Simple_repeat 1 123 0 441 0 0 0 chrX 15063785 15063834 -147536096 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 26 30 0 0 chrX 15063904 15063937 -147535993 + AT_rich Low_complexity Low_complexity 1 33 0 2849 106 37 0 chrX 15063951 15064358 -147535572 + L1MB2 LINE L1 5749 6170 -1 6074 106 13 11 chrX 15064527 15065439 -147534491 - L1MA4 LINE L1 -6 6294 5381 3343 127 2 2 chrX 15065409 15065922 -147534008 - L1MA4 LINE L1 -1143 5003 4491 * 2033 164 0 0 chrX 15065935 15066245 -147533685 - AluSx SINE Alu -2 310 1 812 320 81 17 chrX 15067259 15067736 -147532194 - MLT1K LTR MaLR -19 569 27 4355 114 16 22 chrX 15068088 15068714 -147531216 - L1MA4A LINE L1 -12 6291 5663 189 74 0 0 chrX 15068714 15068741 -147531189 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1825 164 3 3 chrX 15068741 15069027 -147530903 - AluJo SINE Alu -26 286 1 4355 114 16 22 chrX 15069027 15069068 -147530862 - L1MA4A LINE L1 -638 5665 5627 26 0 0 0 chrX 15069151 15069177 -147530753 + AT_rich Low_complexity Low_complexity 1 26 0 912 247 50 70 chrX 15069310 15069711 -147530219 + HAL1 LINE L1 4 396 -2111 1382 228 36 31 chrX 15069719 15069999 -147529931 - LTR37B LTR ERV1 -45 423 139 2502 56 0 7 chrX 15069999 15070304 -147529626 + AluY SINE Alu 3 305 -6 1382 228 36 31 chrX 15070304 15070444 -147529486 - LTR37B LTR ERV1 -329 139 1 1694 11 16 0 chrX 15070478 15070686 -147529244 + L1PA3 LINE L1 5949 6159 0 2266 172 14 3 chrX 15071190 15071551 -147528379 - MLT1A1 LTR MaLR 0 365 1 344 313 119 6 chrX 15071984 15072160 -147527770 - L2 LINE L2 -1237 2077 1882 1614 195 0 3 chrX 15072394 15072698 -147527232 - AluJo SINE Alu 0 303 1 554 253 32 13 chrX 15072748 15072906 -147527024 - MER110 LTR ERV1 -15 476 316 390 191 24 12 chrX 15073080 15073164 -147526766 - LTR37B LTR ERV1 -383 85 1 2126 122 7 3 chrX 15073313 15073609 -147526321 + AluSq SINE Alu 1 297 -16 374 167 26 0 chrX 15073631 15073709 -147526221 + GA-rich Low_complexity Low_complexity 1 80 0 249 56 19 56 chrX 15073879 15073933 -147525997 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 236 307 27 0 chrX 15074025 15074100 -147525830 + MLT1K LTR MaLR 512 588 0 1750 160 6 45 chrX 15074471 15074784 -147525146 - AluJb SINE Alu -11 301 1 725 92 0 10 chrX 15074847 15074945 -147524985 + HY3 scRNA scRNA 1 97 -4 31 0 0 0 chrX 15074947 15074978 -147524952 + AT_rich Low_complexity Low_complexity 1 31 0 219 344 0 0 chrX 15074991 15075055 -147524875 - L2 LINE L2 -83 3189 3126 2057 220 31 43 chrX 15075136 15075378 -147524552 + L1ME3 LINE L1 5577 5820 -342 2254 107 7 0 chrX 15075378 15075677 -147524253 + AluSc SINE Alu 1 301 -8 2057 220 31 43 chrX 15075677 15075921 -147524009 + L1ME3 LINE L1 5820 6059 -103 2230 102 7 0 chrX 15075921 15076216 -147523714 - AluSx SINE Alu -15 297 1 2057 220 31 43 chrX 15076216 15076268 -147523662 + L1ME3 LINE L1 6059 6110 -52 514 111 0 0 chrX 15076272 15076344 -147523586 - MADE1 DNA Mariner 0 80 9 463 209 0 11 chrX 15076369 15076460 -147523470 + LTR16B LTR ERVL 373 462 -2 * 501 209 68 41 chrX 15076460 15076658 -147523272 - MLT1H LTR MaLR -326 216 1 1771 147 3 29 chrX 15077126 15077438 -147522492 + AluJo SINE Alu 1 304 -8 2568 70 3 0 chrX 15077439 15077751 -147522179 + AluSp SINE Alu 1 313 0 3031 197 49 57 chrX 15078281 15078318 -147521612 - L1ME2 LINE L1 -2 6162 6126 2025 131 7 0 chrX 15078318 15078643 -147521287 - AluJb SINE Alu 0 312 1 3031 197 49 57 chrX 15078643 15078731 -147521199 - L1ME2 LINE L1 -38 6126 6039 1937 140 10 3 chrX 15078731 15079024 -147520906 - AluJb SINE Alu -17 295 1 3031 197 49 57 chrX 15079024 15079402 -147520528 - L1ME2 LINE L1 -125 6039 5660 239 0 0 31 chrX 15079402 15079434 -147520496 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3031 197 49 57 chrX 15079434 15079542 -147520388 - L1ME2 LINE L1 -504 5660 5553 1898 79 0 17 chrX 15079542 15079783 -147520147 - AluSx SINE Alu -18 294 58 3031 197 49 57 chrX 15079783 15079999 -147519931 - L1ME2 LINE L1 -611 5553 5338 459 231 196 0 chrX 15081046 15081189 -147518741 - MER5A DNA MER1_type -7 182 12 1612 168 51 0 chrX 15081260 15081534 -147518396 - AluJb SINE Alu -24 288 1 623 99 0 40 chrX 15081540 15081641 -147518289 - L1MA4A LINE L1 -6 6297 6201 359 85 0 0 chrX 15081643 15081690 -147518240 - L1MA4 LINE L1 -56 6244 6198 1256 91 61 30 chrX 15081692 15081825 -147518105 - L1MA4 LINE L1 -56 6244 6102 2461 129 65 45 chrX 15081825 15082048 -147517882 - MSTB LTR MaLR 0 426 190 2076 128 3 3 chrX 15082048 15082345 -147517585 - AluSx SINE Alu -15 297 1 2461 129 65 45 chrX 15082345 15082539 -147517391 - MSTB LTR MaLR -236 190 1 1256 91 61 30 chrX 15082539 15082603 -147517327 - L1MA4 LINE L1 -198 6102 6041 314 241 92 64 chrX 15082770 15082911 -147517019 + MLT1L LTR MaLR 168 312 -303 1860 146 50 0 chrX 15082918 15083199 -147516731 - AluJo SINE Alu -17 295 1 2338 96 0 7 chrX 15083780 15084083 -147515847 - AluSx SINE Alu -11 301 1 382 171 0 110 chrX 15084195 15084300 -147515630 + L1M1 LINE L1 11 546 -6943 2099 92 33 0 chrX 15084301 15084573 -147515357 + AluSx SINE Alu 1 281 -31 186 43 0 0 chrX 15084575 15084598 -147515332 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 227 352 0 28 chrX 15084607 15084678 -147515252 - L2 LINE L2 -79 3193 3125 1983 110 38 0 chrX 15084717 15085008 -147514922 + AluJo SINE Alu 1 302 -10 320 174 111 0 chrX 15085667 15085755 -147514175 + L1MC/D LINE L1 5600 5696 -642 410 325 89 34 chrX 15085782 15086240 -147513690 + L1MB8 LINE L1 5297 5782 -380 2356 79 3 3 chrX 15086600 15086892 -147513038 + AluSp SINE Alu 1 292 -21 1852 123 0 55 chrX 15087087 15087395 -147512535 - AluJb SINE Alu -21 291 1 1056 175 76 22 chrX 15087528 15087792 -147512138 + L1MB8 LINE L1 5840 6115 -63 459 159 0 0 chrX 15087842 15087911 -147512019 + L1MB7 LINE L1 6108 6176 -8 824 118 7 44 chrX 15088973 15089109 -147510821 - FAM SINE Alu -13 172 42 903 136 30 0 chrX 15089732 15089864 -147510066 - AluJo SINE Alu -176 136 1 983 159 92 57 chrX 15090265 15090346 -147509584 + MER46A DNA MER2_type 2 79 -2652 1714 138 15 90 chrX 15090346 15090680 -147509250 + AluSx SINE Alu 3 311 -1 983 159 92 57 chrX 15090680 15090825 -147509105 + MER46A DNA MER2_type 79 236 0 180 318 127 0 chrX 15091061 15091171 -147508759 + L2 LINE L2 3145 3268 -4 889 201 130 0 chrX 15092920 15093089 -147506841 - AluJo SINE Alu -111 201 11 1919 110 45 14 chrX 15093419 15093710 -147506220 - AluSx SINE Alu -12 300 1 1991 118 14 14 chrX 15094566 15094862 -147505068 - AluSx SINE Alu -16 296 1 1833 156 3 0 chrX 15095245 15095533 -147504397 + AluJb SINE Alu 21 309 -3 4183 153 58 64 chrX 15095534 15095758 -147504172 + L1MB7 LINE L1 5195 5419 -765 2010 146 0 0 chrX 15095758 15096083 -147503847 + AluSx SINE Alu 1 325 0 4183 153 58 64 chrX 15096083 15096788 -147503142 + L1MB7 LINE L1 5419 6130 -54 779 308 53 30 chrX 15097712 15098073 -147501857 + MER68 LTR ERV1 190 558 -4 247 271 225 8 chrX 15099255 15099384 -147500546 - MER102a DNA MER1_type 0 330 174 2192 98 47 0 chrX 15099916 15100213 -147499717 + AluY SINE Alu 1 311 0 2178 129 0 0 chrX 15100401 15100712 -147499218 + AluSx SINE Alu 1 311 -1 308 214 101 22 chrX 15100766 15100855 -147499075 + L1MC4a LINE L1 5541 5636 -528 1651 159 32 18 chrX 15100873 15101156 -147498774 - AluJo SINE Alu -25 287 1 667 278 149 14 chrX 15101531 15101819 -147498111 + MER68 LTR ERV1 229 555 -7 819 180 31 0 chrX 15102063 15102191 -147497739 - FLAM_C SINE Alu -10 133 2 350 248 187 75 chrX 15102193 15102407 -147497523 - L1MC/D LINE L1 -1988 5820 5583 187 98 24 73 chrX 15103146 15103187 -147496743 + MIR SINE MIR 106 144 -118 2308 83 10 26 chrX 15103751 15104063 -147495867 + AluSp SINE Alu 5 311 -2 295 253 40 30 chrX 15104063 15104162 -147495768 + L3 LINE CR1 900 999 -578 797 200 0 8 chrX 15104212 15104342 -147495588 - FLAM_A SINE Alu -4 129 1 784 224 148 76 chrX 15104462 15104739 -147495191 + AluJo SINE Alu 2 298 -4 21 0 0 0 chrX 15104759 15104780 -147495150 + AT_rich Low_complexity Low_complexity 1 21 0 183 306 127 30 chrX 15104831 15104965 -147494965 + L3 LINE CR1 1268 1414 -163 445 271 89 26 chrX 15105194 15105463 -147494467 + L1MC4a LINE L1 5610 5895 -1913 2319 76 7 0 chrX 15105768 15106095 -147493835 + AluSg SINE Alu 19 347 0 277 323 166 22 chrX 15106621 15106844 -147493086 - MIR SINE MIR -6 256 2 1782 121 10 49 chrX 15107184 15107489 -147492441 - AluSx SINE Alu -19 293 1 734 221 84 13 chrX 15107597 15107751 -147492179 - FRAM SINE Alu -1 165 1 532 265 32 22 chrX 15107837 15108022 -147491908 + MIR SINE MIR 76 262 0 387 224 35 35 chrX 15108164 15108280 -147491650 + L1ME3A LINE L1 6055 6170 0 1041 101 7 0 chrX 15109129 15109267 -147490663 - AluSq/x SINE Alu -173 139 1 282 266 110 57 chrX 15109510 15109573 -147490357 - L1ME4a LINE L1 -86 6035 5977 2343 85 0 16 chrX 15109573 15109878 -147490052 - AluSq SINE Alu -13 300 1 282 266 110 57 chrX 15109878 15109982 -147489948 - L1ME4a LINE L1 -144 5977 5880 2048 153 0 0 chrX 15109982 15110283 -147489647 + AluSx SINE Alu 1 301 -11 282 266 110 57 chrX 15110283 15110396 -147489534 - L1ME4a LINE L1 -241 5880 5739 1849 137 33 13 chrX 15112795 15113095 -147486835 + AluJb SINE Alu 1 306 -6 344 290 35 28 chrX 15113239 15113384 -147486546 + L2 LINE L2 2534 2679 -635 2084 108 6 55 chrX 15113408 15113733 -147486197 - AluSx SINE Alu -3 309 1 836 335 73 32 chrX 15114027 15114778 -147485152 - L2 LINE L2 -24 3289 2503 255 61 0 0 chrX 15114868 15114901 -147485029 + (A)n Simple_repeat Simple_repeat 1 33 0 2281 97 3 10 chrX 15114929 15115240 -147484690 + AluSg SINE Alu 1 309 -1 2037 93 14 10 chrX 15115373 15115662 -147484268 + AluSq SINE Alu 1 290 -23 180 97 0 0 chrX 15115667 15115698 -147484232 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 460 270 7 47 chrX 15115708 15115856 -147484074 - L2 LINE L2 -845 2469 2328 301 306 33 25 chrX 15116032 15116153 -147483777 - MIR SINE MIR -84 178 57 683 229 167 5 chrX 15116209 15116419 -147483511 + LTR50 LTR ERVL 1 244 -551 413 152 130 0 chrX 15116426 15116518 -147483412 + LTR50 LTR ERVL 498 601 -194 348 195 98 0 chrX 15116553 15116635 -147483295 + LTR50 LTR ERVL 706 795 0 220 286 65 13 chrX 15116799 15116876 -147483054 - L2 LINE L2 -33 3280 3200 288 0 0 0 chrX 15116932 15116964 -147482966 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2204 90 7 0 chrX 15116979 15117268 -147482662 - AluSx SINE Alu -20 292 2 1004 159 0 6 chrX 15117283 15117440 -147482490 - AluJb SINE Alu -24 288 133 291 376 0 57 chrX 15117440 15117581 -147482349 - L2 LINE L2 -177 3095 2963 2276 126 0 0 chrX 15117601 15117911 -147482019 + AluSx SINE Alu 2 311 -1 683 177 85 8 chrX 15117928 15118058 -147481872 + MER5B DNA MER1_type 33 172 -6 279 0 0 0 chrX 15118110 15118141 -147481789 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 843 136 0 8 chrX 15118160 15118278 -147481652 + FLAM_C SINE Alu 2 118 -15 22 56 0 0 chrX 15118317 15118353 -147481577 + AT_rich Low_complexity Low_complexity 1 36 0 2453 202 118 44 chrX 15118726 15118850 -147481080 - L1MD3 LINE L1 0 8042 7929 191 36 36 0 chrX 15118850 15118878 -147481052 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 2453 202 118 44 chrX 15118878 15119265 -147480665 - L1MD3 LINE L1 -113 7929 7572 1739 81 0 0 chrX 15119265 15119476 -147480454 - AluSg/x SINE Alu -17 293 83 1976 124 0 20 chrX 15119480 15119778 -147480152 - AluSx SINE Alu -20 292 1 2453 202 118 44 chrX 15119778 15119978 -147479952 - L1MD3 LINE L1 -472 7570 7284 430 188 31 10 chrX 15120327 15120423 -147479507 + L2 LINE L2 2609 2706 -608 1088 239 98 17 chrX 15120590 15120946 -147478984 + L2 LINE L2 2909 3293 -20 402 21 0 0 chrX 15120946 15120993 -147478937 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 85 0 0 chrX 15120994 15121041 -147478889 + (GA)n Simple_repeat Simple_repeat 2 48 0 577 156 37 59 chrX 15121112 15121196 -147478734 + MER69 DNA AcHobo 5 89 -1137 1889 156 3 0 chrX 15121196 15121501 -147478429 + AluJb SINE Alu 1 306 0 577 156 37 59 chrX 15121501 15121574 -147478356 + MER69 DNA AcHobo 89 203 -1023 961 273 90 31 chrX 15121594 15122158 -147477772 + MLT2F LTR ERVL 29 663 0 * 1307 223 139 32 chrX 15122158 15122434 -147477496 + MER69 DNA AcHobo 206 526 -2000 2404 98 0 0 chrX 15122434 15122731 -147477199 + AluSx SINE Alu 1 297 -15 1307 223 139 32 chrX 15122731 15122784 -147477146 + MER69 DNA AcHobo 526 572 -1954 1039 140 35 5 chrX 15122782 15122983 -147476947 + MER69 DNA AcHobo 2319 2525 -1 * 922 211 43 34 chrX 15123080 15123288 -147476642 - MER63A DNA MER1_type 0 210 1 2137 141 0 0 chrX 15123572 15123884 -147476046 - AluSx SINE Alu 0 312 1 614 184 69 46 chrX 15124084 15124258 -147475672 - MER104 DNA MER2_type -1 179 2 210 366 11 32 chrX 15124303 15124396 -147475534 - MIR SINE MIR -75 133 43 2122 88 0 69 chrX 15124590 15124910 -147475020 - AluSx SINE Alu -14 298 1 353 301 93 22 chrX 15125012 15125195 -147474735 + MIR SINE MIR 61 256 -6 879 168 76 56 chrX 15125299 15125347 -147474583 - MER3 DNA MER1_type -8 201 155 1563 165 72 7 chrX 15125347 15125638 -147474292 + AluJb SINE Alu 1 310 -2 879 168 76 56 chrX 15125638 15125786 -147474144 - MER3 DNA MER1_type -54 155 1 264 164 14 41 chrX 15126730 15126803 -147473127 - L1ME4a LINE L1 -49 6072 6002 1981 176 61 38 chrX 15127242 15127496 -147472434 - L1MB7 LINE L1 0 6184 5914 1983 84 28 39 chrX 15127496 15127806 -147472124 + AluSx SINE Alu 1 307 0 1981 176 61 38 chrX 15127806 15127977 -147471953 - L1MB7 LINE L1 -270 5914 5748 1051 191 71 0 chrX 15127978 15128203 -147471727 - L1MB7 LINE L1 -1338 4808 4568 225 233 44 22 chrX 15128202 15128292 -147471638 - L1ME4a LINE L1 -1906 5902 5811 * 1615 112 19 0 chrX 15128452 15128666 -147471264 - MER20 DNA MER1_type -1 218 1 654 265 71 25 chrX 15129097 15129335 -147470595 - MER112 DNA MER1_type -11 249 1 2168 83 0 4 chrX 15129621 15129898 -147470032 + AluY SINE Alu 18 293 -18 714 171 86 0 chrX 15129898 15130015 -147469915 + FLAM_A SINE Alu 2 128 -5 1363 198 90 7 chrX 15130443 15130731 -147469199 + AluJo SINE Alu 1 312 0 281 181 18 0 chrX 15131129 15131185 -147468745 - MIR3 SINE MIR -48 160 103 2103 117 59 61 chrX 15131187 15131596 -147468334 - L1MC2 LINE L1 0 6344 5937 2176 187 21 27 chrX 15131596 15132199 -147467731 - L1MC2 LINE L1 -743 5403 4856 649 285 56 40 chrX 15132268 15132517 -147467413 + MIR SINE MIR 5 257 -5 687 206 36 73 chrX 15132694 15132913 -147467017 + L1ME2 LINE L1 5945 6155 -9 1079 206 31 50 chrX 15132935 15133256 -147466674 + L1MC5 LINE L1 7609 7923 -38 2060 66 0 0 chrX 15133383 15133627 -147466303 - L1PA6 LINE L1 -5 6149 5906 1013 139 53 43 chrX 15133638 15133825 -147466105 - L1MD2 LINE L1 -10 6349 6161 261 0 0 0 chrX 15133832 15133861 -147466069 + (TG)n Simple_repeat Simple_repeat 2 30 0 608 29 0 0 chrX 15134032 15134100 -147465830 + U4 snRNA snRNA 1 68 -77 1390 148 21 0 chrX 15134560 15134803 -147465127 + L1MA7 LINE L1 6044 6291 0 254 290 99 8 chrX 15135323 15135454 -147464476 - L1ME4a LINE L1 -2 6119 5977 326 274 29 20 chrX 15135604 15135706 -147464224 + L2 LINE L2 3210 3312 -1 354 250 33 0 chrX 15135848 15135940 -147463990 + MIR SINE MIR 41 135 -127 319 246 123 101 chrX 15135927 15136155 -147463775 - L2 LINE L2 -30 3283 3051 * 1794 153 29 13 chrX 15136179 15136486 -147463444 + AluJb SINE Alu 1 312 0 277 202 167 12 chrX 15136520 15136604 -147463326 - MER112 DNA MER1_type -7 253 157 1228 169 187 18 chrX 15137206 15137490 -147462440 + MER58B DNA MER1_type 5 336 -5 351 227 0 0 chrX 15138786 15138914 -147461016 + G-rich Low_complexity Low_complexity 1 128 0 3541 170 40 31 chrX 15139056 15140185 -147459745 - L1MB8 LINE L1 -228 5950 4822 1819 208 108 34 chrX 15140291 15140826 -147459104 + HsTC2 DNA Tc2 1283 1857 -41 248 263 110 8 chrX 15140943 15141061 -147458869 - HAL1 LINE L1 -2331 176 47 2377 233 80 5 chrX 15141117 15141733 -147458197 - L1MC4a LINE L1 -20 7788 7146 237 221 156 0 chrX 15141828 15141905 -147458025 - MLT1J1 LTR MaLR 0 446 358 539 176 54 57 chrX 15141960 15142110 -147457820 - L1MD1 LINE L1 0 8042 6154 24 53 0 0 chrX 15142113 15142151 -147457779 + AT_rich Low_complexity Low_complexity 1 38 0 529 215 114 0 chrX 15142225 15142374 -147457556 - L1MC4a LINE L1 -1341 6467 6302 966 193 51 99 chrX 15142406 15142693 -147457237 - L1MC4 LINE L1 -238 7804 7536 1991 102 38 41 chrX 15142693 15142986 -147456944 + AluSx SINE Alu 1 292 -20 966 193 51 99 chrX 15142986 15143050 -147456880 - L1MC4 LINE L1 -506 7536 7470 5856 98 2 2 chrX 15143058 15143863 -147456067 - L1PA13 LINE L1 -19 6144 5340 604 212 53 0 chrX 15143863 15143995 -147455935 - L1MC4 LINE L1 -558 7484 7346 1089 130 46 8 chrX 15144235 15144445 -147455485 - L1MB4 LINE L1 0 6174 5964 1893 148 13 16 chrX 15145762 15146073 -147453857 + AluJo SINE Alu 1 310 -2 446 283 118 45 chrX 15146090 15146404 -147453526 - MLT1H1 LTR MaLR -2 553 217 1172 194 45 22 chrX 15148160 15148428 -147451502 + Charlie4a DNA MER1_type 4 277 -231 1096 109 12 18 chrX 15148440 15148605 -147451325 - AluSg/x SINE Alu -14 298 135 182 37 37 0 chrX 15148605 15148632 -147451298 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2227 81 14 14 chrX 15148632 15148927 -147451003 - AluSc SINE Alu -14 295 1 1065 148 42 9 chrX 15148933 15149149 -147450781 + Charlie4a DNA MER1_type 283 505 -3 2927 135 11 44 chrX 15150148 15150690 -147449240 - L1MB7 LINE L1 -32 6152 5629 822 256 99 48 chrX 15150999 15151261 -147448669 + MLT1I LTR MaLR 98 378 -31 1163 152 71 29 chrX 15151261 15151471 -147448459 + MER20 DNA MER1_type 1 219 0 822 256 99 48 chrX 15151471 15151501 -147448429 + MLT1I LTR MaLR 378 405 -4 484 295 52 43 chrX 15151757 15151823 -147448107 - MIR SINE MIR -48 214 150 1927 138 0 7 chrX 15151823 15152136 -147447794 - AluSx SINE Alu 0 311 1 484 295 52 43 chrX 15152136 15152278 -147447652 - MIR SINE MIR -112 150 3 1374 180 11 15 chrX 15152344 15152605 -147447325 - MLT1F1 LTR MaLR 0 567 308 2048 211 45 24 chrX 15152717 15153182 -147446748 - MLT1F LTR MaLR -67 475 1 636 231 19 26 chrX 15154201 15154357 -147445573 - MLT1F1 LTR MaLR -387 155 1 424 146 0 125 chrX 15156575 15156671 -147443259 - MER81 DNA DNA -30 84 1 1775 151 0 77 chrX 15156724 15157048 -147442882 - AluJo SINE Alu -13 299 1 1163 217 14 5 chrX 15157395 15157616 -147442314 - MER58A DNA MER1_type 0 224 2 667 188 0 0 chrX 15157696 15157813 -147442117 + L1M4 LINE L1 4080 4196 -1950 1254 163 30 52 chrX 15157840 15158110 -147441820 + AluJo SINE Alu 36 299 -13 1428 199 37 25 chrX 15158111 15158433 -147441497 + L1M4 LINE L1 4198 4523 -1623 5538 182 35 30 chrX 15158435 15160141 -147439789 + L1MD1 LINE L1 4290 6008 -234 2173 128 7 0 chrX 15160141 15160437 -147439493 + AluSx SINE Alu 1 298 -14 5538 182 35 30 chrX 15160437 15160674 -147439256 + L1MD1 LINE L1 6008 6242 0 454 289 16 0 chrX 15161094 15161215 -147438715 + MLT1J LTR MaLR 31 153 -358 2228 138 49 103 chrX 15161321 15161533 -147438397 + MLT1C LTR MaLR 1 223 -244 257 0 30 0 chrX 15161533 15161566 -147438364 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2228 138 49 103 chrX 15161566 15161847 -147438083 + MLT1C LTR MaLR 223 467 0 2228 165 37 0 chrX 15161873 15162225 -147437705 + MLT1A1 LTR MaLR 1 365 0 771 243 37 40 chrX 15163110 15163574 -147436356 + MLT1H LTR MaLR 1 555 0 346 274 14 82 chrX 15163634 15163780 -147436150 - LTR67 LTR ERVL -9 548 413 604 141 31 6 chrX 15163981 15164090 -147435840 + L1PB1 LINE L1 5685 5791 -360 236 78 0 118 chrX 15164121 15164172 -147435758 + L1MC4 LINE L1 6659 6703 -1339 294 247 0 0 chrX 15164172 15164249 -147435681 + (CATA)n Simple_repeat Simple_repeat 2 78 0 2706 92 17 3 chrX 15164258 15164618 -147435312 + L1PB1 LINE L1 5782 6146 -5 376 345 45 23 chrX 15164642 15164819 -147435111 - LTR67 LTR ERVL -374 183 3 186 189 0 0 chrX 15166666 15166703 -147433227 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 264 250 0 0 chrX 15167095 15167151 -147432779 + MIR SINE MIR 207 262 0 418 164 0 0 chrX 15167699 15167760 -147432170 + AluJ/FLAM SINE Alu 1 61 -251 1602 171 10 17 chrX 15167766 15168058 -147431872 + AluJo SINE Alu 1 290 -22 854 301 77 39 chrX 15168360 15168894 -147431036 - LTR67 LTR ERVL -2 555 2 719 257 64 24 chrX 15168894 15169167 -147430763 - L1MC/D LINE L1 -311 5810 5529 216 0 0 0 chrX 15169173 15169197 -147430733 + (T)n Simple_repeat Simple_repeat 1 24 0 1222 275 151 18 chrX 15170098 15170666 -147429264 + L1MC4a LINE L1 5288 5931 -1877 517 229 46 69 chrX 15171302 15171520 -147428410 + L1M4 LINE L1 3998 4210 -1936 815 186 14 7 chrX 15171532 15171672 -147428258 + FRAM SINE Alu 4 144 -32 2407 81 0 28 chrX 15171773 15172093 -147427837 - AluY SINE Alu 0 311 1 872 174 20 45 chrX 15172430 15172631 -147427299 - L1MEc LINE L1 -6165 231 36 2444 46 0 29 chrX 15172798 15173104 -147426826 + AluY SINE Alu 1 297 -14 549 173 24 71 chrX 15173104 15173231 -147426699 - L1ME3 LINE L1 -20 6142 6022 225 310 115 0 chrX 15173598 15173685 -147426245 - MIR3 SINE MIR -21 187 91 213 94 0 0 chrX 15174114 15174146 -147425784 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 2193 120 7 0 chrX 15174564 15174863 -147425067 + AluSx SINE Alu 1 301 -11 2174 110 0 25 chrX 15175550 15175579 -147424351 - AluSx SINE Alu -2 310 282 225 0 0 0 chrX 15175579 15175604 -147424326 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2174 110 0 25 chrX 15175604 15175892 -147424038 - AluSx SINE Alu -30 282 1 212 216 20 20 chrX 15176265 15176316 -147423614 - MIR SINE MIR -74 188 138 * 391 313 80 101 chrX 15176312 15176638 -147423292 - L2 LINE L2 0 3272 2954 239 274 16 16 chrX 15177174 15177236 -147422694 - MIR SINE MIR -181 81 20 630 263 106 17 chrX 15177947 15178183 -147421747 + MIR SINE MIR 1 257 -5 246 184 0 0 chrX 15178447 15178496 -147421434 + L1MD1 LINE L1 6180 6228 -14 443 276 0 17 chrX 15178686 15178802 -147421128 - L2 LINE L2 -1 3312 3199 321 244 36 0 chrX 15179247 15179335 -147420595 - MLT1J2 LTR MaLR -3 443 353 491 228 2 0 chrX 15179461 15179577 -147420353 - MLT1J2 LTR MaLR -288 162 69 1787 176 3 7 chrX 15181083 15181373 -147418557 - AluJb SINE Alu -23 289 1 2301 96 0 10 chrX 15183197 15183509 -147416421 - AluSq SINE Alu -4 309 1 2202 88 0 70 chrX 15184422 15184752 -147415178 - AluSg SINE Alu -3 307 1 1568 156 41 32 chrX 15185508 15185823 -147414107 - MER58D DNA MER1_type -68 318 1 298 286 107 36 chrX 15185833 15185973 -147413957 + MIR SINE MIR 20 169 -93 1197 291 34 47 chrX 15186133 15186558 -147413372 + L1MC4 LINE L1 7316 7732 -310 2893 77 3 22 chrX 15186558 15186920 -147413010 - THE1A LTR MaLR 0 355 1 1197 291 34 47 chrX 15186920 15187085 -147412845 + L1MC4 LINE L1 7732 7898 -144 189 107 0 0 chrX 15187086 15187114 -147412816 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 715 133 37 52 chrX 15189747 15189882 -147410048 - FLAM_C SINE Alu 0 133 1 505 260 13 7 chrX 15190248 15190398 -147409532 - L1MC5 LINE L1 -65 7896 7746 185 132 26 26 chrX 15192229 15192267 -147407663 - MIR SINE MIR -71 191 154 265 323 63 13 chrX 15192473 15192631 -147407299 - MLT1I LTR MaLR -203 206 41 338 331 108 22 chrX 15192711 15192850 -147407080 - MIR SINE MIR -103 159 9 725 320 52 55 chrX 15193760 15194042 -147405888 + L2 LINE L2 2378 2659 -613 1672 124 7 44 chrX 15194042 15194317 -147405613 - AluJb SINE Alu -9 303 39 1642 184 46 7 chrX 15194318 15194600 -147405330 - AluJb SINE Alu -19 293 1 725 320 52 55 chrX 15194600 15194956 -147404974 + L2 LINE L2 2658 3018 -254 496 221 39 26 chrX 15195003 15195157 -147404773 - LTR37B LTR ERV1 -85 383 228 787 208 6 66 chrX 15195719 15195902 -147404028 - MER5B DNA MER1_type 0 178 7 387 0 0 0 chrX 15195942 15195985 -147403945 + (TG)n Simple_repeat Simple_repeat 2 44 0 623 169 48 0 chrX 15196026 15196150 -147403780 - MER96 DNA MER1_type? -36 139 10 731 157 116 6 chrX 15196345 15196517 -147403413 - Charlie4a DNA MER1_type -3 505 315 848 132 0 0 chrX 15196518 15196639 -147403291 + AluSq/x SINE Alu 1 121 -192 1767 103 0 0 chrX 15196639 15196863 -147403067 + AluSg/x SINE Alu 74 297 -13 938 195 98 35 chrX 15196874 15196982 -147402948 - Charlie4a DNA MER1_type -1632 329 229 2197 85 0 7 chrX 15196982 15197300 -147402630 + AluSc SINE Alu 1 316 0 938 195 98 35 chrX 15197300 15197477 -147402453 - Charlie4a DNA MER1_type -1732 229 25 946 201 13 40 chrX 15197914 15198138 -147401792 + MER20 DNA MER1_type 1 218 -1 369 0 0 0 chrX 15198509 15198550 -147401380 + (TG)n Simple_repeat Simple_repeat 2 42 0 199 337 116 0 chrX 15199111 15199197 -147400733 - MIR SINE MIR -76 132 37 419 307 69 26 chrX 15199580 15199769 -147400161 + MIR3 SINE MIR 8 204 -4 459 369 14 14 chrX 15199817 15200034 -147399896 + MIR SINE MIR 3 219 -43 779 168 79 60 chrX 15200036 15200250 -147399680 + Charlie5 DNA MER1_type 1 212 -2400 6824 25 0 0 chrX 15200298 15201128 -147398802 - L1PA4 LINE L1 -3 6152 5323 977 199 80 56 chrX 15201128 15201280 -147398650 - MER58B DNA MER1_type -2099 321 157 2129 121 3 19 chrX 15201280 15201593 -147398337 - AluSx SINE Alu -4 308 1 977 199 80 56 chrX 15201593 15201726 -147398204 - MER58B DNA MER1_type -2263 157 29 529 279 74 70 chrX 15201730 15201883 -147398047 + L1ME2 LINE L1 5639 5790 -374 1722 179 0 0 chrX 15201883 15202151 -147397779 - AluJb SINE Alu -44 268 1 529 279 74 70 chrX 15202151 15202487 -147397443 + L1ME2 LINE L1 5790 6116 -48 949 155 80 9 chrX 15202651 15202864 -147397066 + MER33 DNA MER1_type 1 228 -96 1319 170 30 43 chrX 15202894 15203092 -147396838 - L1MB2 LINE L1 -2 6169 5975 1863 116 112 7 chrX 15203092 15203368 -147396562 - AluSx SINE Alu -7 305 1 1319 170 30 43 chrX 15203368 15203469 -147396461 - L1MB2 LINE L1 -196 5975 5874 189 107 0 0 chrX 15203469 15203497 -147396433 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1485 132 54 29 chrX 15203694 15203936 -147395994 - AluJo SINE Alu -14 298 51 1879 140 24 14 chrX 15204082 15204374 -147395556 + AluJo SINE Alu 11 305 -7 2196 101 0 20 chrX 15205159 15205465 -147394465 - AluSq SINE Alu -13 300 1 765 262 35 22 chrX 15206088 15206317 -147393613 + MIR SINE MIR 21 252 -10 389 179 0 0 chrX 15207242 15207309 -147392621 - MER103 DNA DNA -49 117 51 2322 94 0 0 chrX 15207676 15207973 -147391957 + AluSx SINE Alu 1 297 -15 1839 143 11 4 chrX 15208537 15208840 -147391090 + AluJo SINE Alu 1 305 0 216 0 0 0 chrX 15208894 15208918 -147391012 + (T)n Simple_repeat Simple_repeat 1 24 0 356 234 81 27 chrX 15210679 15210790 -147389140 + MIR SINE MIR 76 192 -70 2030 206 68 35 chrX 15211274 15211319 -147388611 - L1ME2 LINE L1 0 6164 6122 1874 160 0 20 chrX 15211319 15211625 -147388305 - AluJb SINE Alu -12 300 1 2030 206 68 35 chrX 15211625 15212151 -147387779 - L1ME2 LINE L1 -42 6122 5574 207 0 0 0 chrX 15212191 15212214 -147387716 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chrX 15213401 15213427 -147386503 + AT_rich Low_complexity Low_complexity 1 26 0 261 0 0 0 chrX 15214709 15214738 -147385192 + (TG)n Simple_repeat Simple_repeat 1 29 0 475 344 11 26 chrX 15215071 15215260 -147384670 - MIR SINE MIR -73 189 4 512 243 120 95 chrX 15215845 15216212 -147383718 - L2 LINE L2 -5 3308 2933 572 272 38 16 chrX 15216229 15216413 -147383517 - MIR SINE MIR -53 209 22 341 341 61 16 chrX 15216388 15216634 -147383296 - L2 LINE L2 -846 2468 2212 * 240 212 91 0 chrX 15216659 15216725 -147383205 + MIR SINE MIR 45 116 -92 215 302 302 23 chrX 15217559 15218172 -147381758 + L2 LINE L2 1937 2720 -594 220 279 0 15 chrX 15218626 15218694 -147381236 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 2034 91 4 0 chrX 15218694 15218959 -147380971 - AluSp SINE Alu -16 297 32 1041 186 86 45 chrX 15221080 15221349 -147378581 + Tigger3(Golem) DNA MER2_type 12 291 -2738 1209 99 6 0 chrX 15221349 15221510 -147378420 - AluSg/x SINE Alu -7 303 142 2913 122 27 89 chrX 15221610 15221948 -147377982 + Tigger3b DNA MER2_type 348 625 -2403 1173 90 22 6 chrX 15221948 15222126 -147377804 - L1MA1 LINE L1 0 6302 6122 2913 122 27 89 chrX 15222126 15222460 -147377470 + Tigger3b DNA MER2_type 625 978 -253 707 69 10 0 chrX 15222460 15222562 -147377368 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1209 137 41 25 chrX 15222563 15222760 -147377170 - AluJb SINE Alu -32 280 81 1552 106 0 0 chrX 15222760 15222986 -147376944 + Tigger3b DNA MER2_type 984 1209 -23 1311 148 18 95 chrX 15222987 15223073 -147376857 - L1MB7 LINE L1 -254 5930 5839 5079 83 28 16 chrX 15223073 15223828 -147376102 - L1MA1 LINE L1 -5 6297 5534 1311 148 18 95 chrX 15223828 15224079 -147375851 - L1MB7 LINE L1 -345 5839 5619 315 235 82 0 chrX 15224939 15225024 -147374906 + MIR SINE MIR 171 262 0 26 50 0 0 chrX 15225475 15225515 -147374415 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chrX 15226289 15226313 -147373617 + AT_rich Low_complexity Low_complexity 1 24 0 435 322 78 0 chrX 15227329 15227496 -147372434 + MIR SINE MIR 27 205 -57 1268 132 44 13 chrX 15227506 15227733 -147372197 - MER46A DNA MER2_type -2 234 1 287 320 104 31 chrX 15227788 15228010 -147371920 + LTR16C LTR ERVL 154 391 -100 337 270 103 28 chrX 15229015 15229337 -147370593 - L1ME LINE L1 -430 5691 5335 277 239 94 36 chrX 15230807 15230945 -147368985 - MLT1J LTR MaLR -327 184 39 373 209 101 0 chrX 15231122 15231251 -147368679 + L1MC4a LINE L1 5762 5903 -1905 2506 69 0 7 chrX 15231605 15231911 -147368019 - AluY SINE Alu -7 304 1 191 32 65 0 chrX 15232392 15232423 -147367507 + T-rich Low_complexity Low_complexity 3 35 0 4328 168 47 13 chrX 15232423 15234153 -147365777 - L1MB7 LINE L1 -6 6178 4395 1142 213 90 39 chrX 15234291 15234883 -147365047 - L1MC5 LINE L1 -170 7791 7261 384 142 66 85 chrX 15234927 15234963 -147364967 - L1MC5 LINE L1 -728 7233 7198 691 218 213 6 chrX 15234963 15235137 -147364793 + MER63A DNA MER1_type 1 210 0 384 142 66 85 chrX 15235137 15235206 -147364724 - L1MC5 LINE L1 -763 7198 7130 204 267 0 0 chrX 15235394 15235439 -147364491 - L2 LINE L2 -6 3307 3263 3844 181 32 21 chrX 15236027 15236814 -147363116 - L1MB7 LINE L1 -40 6144 5325 2266 116 48 22 chrX 15236814 15237169 -147362761 - THE1B LTR MaLR 0 364 1 3844 181 32 21 chrX 15237169 15237736 -147362194 - L1MB7 LINE L1 -859 5325 4766 314 280 18 73 chrX 15238015 15238168 -147361762 + MIR3 SINE MIR 44 191 -17 22 0 0 0 chrX 15239561 15239583 -147360347 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chrX 15239792 15239826 -147360104 + (TA)n Simple_repeat Simple_repeat 1 34 0 3582 229 109 92 chrX 15240200 15242048 -147357882 - HAL1 LINE L1 -141 2366 489 443 255 208 0 chrX 15242435 15242584 -147357346 - HAL1 LINE L1 -2180 327 148 442 314 63 29 chrX 15242746 15242953 -147356977 + L1MEd LINE L1 543 756 -5363 416 282 52 65 chrX 15242958 15243003 -147356927 + L1MEd LINE L1 803 847 -5272 2839 7 0 3 chrX 15243003 15243313 -147356617 + AluYa5 SINE Alu 1 309 -2 416 282 52 65 chrX 15243313 15243515 -147356415 + L1MEd LINE L1 847 1047 -5072 706 283 74 39 chrX 15243529 15243988 -147355942 + L1MEd LINE L1 1171 1645 -4665 1765 271 105 21 chrX 15243988 15244990 -147354940 + L1MEd LINE L1 2877 3962 -2167 207 0 0 0 chrX 15245237 15245260 -147354670 + (TG)n Simple_repeat Simple_repeat 2 24 0 1992 123 0 7 chrX 15246938 15247256 -147352674 + AluSx SINE Alu 1 316 0 182 296 137 56 chrX 15247474 15247915 -147352015 - L2 LINE L2 -219 3053 2550 207 69 0 0 chrX 15248163 15248192 -147351738 + (TATG)n Simple_repeat Simple_repeat 2 30 0 189 147 0 0 chrX 15248198 15248232 -147351698 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 866 121 0 0 chrX 15248243 15248359 -147351571 - FLAM_C SINE Alu -27 116 1 641 197 68 20 chrX 15249033 15249180 -147350750 + MIR SINE MIR 5 158 -104 207 162 0 0 chrX 15250080 15250117 -147349813 + (CAT)n Simple_repeat Simple_repeat 3 39 0 261 0 0 0 chrX 15250843 15250872 -147349058 + (CA)n Simple_repeat Simple_repeat 2 30 0 4873 166 47 12 chrX 15251534 15252487 -147347443 - L1MB8 LINE L1 0 6178 4993 2223 96 0 0 chrX 15252487 15252804 -147347126 - AluSc SINE Alu 0 317 1 4873 166 47 12 chrX 15252804 15253362 -147346568 - L1MB8 LINE L1 -1185 4993 4456 2050 105 0 0 chrX 15253537 15253803 -147346127 + AluY SINE Alu 27 292 -19 222 302 60 43 chrX 15253803 15253919 -147346011 + L3b LINE CR1 1379 1496 -87 1218 96 110 10 chrX 15254201 15254410 -147345520 - L1MA9 LINE L1 -1 6311 6082 2484 54 0 3 chrX 15254951 15255245 -147344685 + AluY SINE Alu 1 293 -18 262 301 130 30 chrX 15256001 15256212 -147343718 - MIR SINE MIR -21 241 16 399 258 11 0 chrX 15256453 15256542 -147343388 - MER5B DNA MER1_type -14 164 75 30 0 0 0 chrX 15256938 15256968 -147342962 + AT_rich Low_complexity Low_complexity 1 30 0 270 304 11 0 chrX 15257886 15257978 -147341952 + GA-rich Low_complexity Low_complexity 4 96 0 223 310 0 14 chrX 15258017 15258088 -147341842 - MER5B DNA MER1_type -106 72 3 266 269 198 47 chrX 15259340 15259495 -147340435 - MIR3 SINE MIR -61 147 7 569 244 45 0 chrX 15264875 15265051 -147334879 + L1M4 LINE L1 3073 3256 -2890 538 281 69 59 chrX 15266562 15266771 -147333159 - HAL1 LINE L1 -876 1631 1415 8190 62 2 0 chrX 15266771 15267738 -147332192 - LTR5 LTR ERVK 0 969 1 538 281 69 59 chrX 15267738 15267919 -147332011 - HAL1 LINE L1 -1092 1415 1237 1929 133 14 10 chrX 15267973 15268266 -147331664 - AluJb SINE Alu -13 299 6 6268 20 0 16 chrX 15269035 15269709 -147330221 - L1PA4 LINE L1 -1 6154 5490 2911 7 0 0 chrX 15269709 15270019 -147329911 - AluYa5 SINE Alu -1 310 1 6268 20 0 16 chrX 15270019 15270040 -147329890 - L1PA4 LINE L1 -665 5490 5470 861 277 4 31 chrX 15270765 15271021 -147328909 - MIR SINE MIR -13 249 1 2421 98 0 0 chrX 15271629 15271935 -147327995 - AluSg SINE Alu -4 306 1 985 180 79 60 chrX 15272050 15272309 -147327621 + MIR SINE MIR 2 261 -1 373 226 0 0 chrX 15272502 15272564 -147327366 + MER58A DNA MER1_type 1 62 -162 313 259 245 0 chrX 15273055 15273194 -147326736 + MER63A DNA MER1_type 1 173 -37 880 59 0 0 chrX 15273481 15273582 -147326348 - AluSg/x SINE Alu -18 294 194 1752 109 4 0 chrX 15273584 15273813 -147326117 - AluSx SINE Alu -82 230 1 2800 192 77 24 chrX 15273819 15274455 -147325475 - L1ME3A LINE L1 -6 6164 5495 490 275 100 34 chrX 15275735 15275961 -147323969 - MIR SINE MIR -15 247 9 217 294 92 37 chrX 15276025 15276134 -147323796 - L2 LINE L2 -6 3266 3152 2107 100 37 23 chrX 15276619 15276918 -147323012 - AluSx SINE Alu -9 303 1 195 283 0 0 chrX 15277133 15277179 -147322751 + MIR3 SINE MIR 112 157 -51 466 277 53 48 chrX 15277180 15277368 -147322562 - MER5A DNA MER1_type 0 189 1 219 378 46 27 chrX 15277492 15277754 -147322176 - L2 LINE L2 -482 2832 2566 460 250 59 0 chrX 15278278 15278414 -147321516 + MER103 DNA DNA 12 155 -11 1102 204 42 5 chrX 15278436 15278652 -147321278 + MER58A DNA MER1_type 1 224 0 326 398 60 5 chrX 15278957 15279173 -147320757 + L2 LINE L2 2566 2793 -521 309 228 76 13 chrX 15279176 15279255 -147320675 - LTR33A LTR ERVL 0 523 440 1554 187 107 0 chrX 15279505 15279804 -147320126 - MLT1F1 LTR MaLR -49 518 188 1706 224 59 25 chrX 15279883 15280325 -147319605 - LTR16A1 LTR ERVL 0 457 1 216 295 0 64 chrX 15280341 15280419 -147319511 + L2 LINE L2 3241 3313 0 25 31 0 0 chrX 15280620 15280652 -147319278 + AT_rich Low_complexity Low_complexity 1 32 0 276 324 97 14 chrX 15282006 15282151 -147317779 + L2 LINE L2 2292 2448 -866 471 283 97 36 chrX 15282234 15282481 -147317449 + L2 LINE L2 3009 3270 -2 723 255 120 5 chrX 15282505 15282721 -147317209 + MIR SINE MIR 1 241 -21 188 312 138 45 chrX 15282888 15283221 -147316709 - L2 LINE L2 -1122 2192 1829 2300 111 0 0 chrX 15284297 15284604 -147315326 - AluSq SINE Alu -6 307 1 23 33 0 0 chrX 15284711 15284741 -147315189 + AT_rich Low_complexity Low_complexity 1 30 0 2408 66 23 0 chrX 15286384 15286688 -147313242 - AluY SINE Alu 0 311 1 4614 143 32 21 chrX 15288394 15289363 -147310567 - L1MB7 LINE L1 -8 6176 5195 1961 161 0 10 chrX 15289364 15289675 -147310255 - AluJo SINE Alu -4 308 1 243 314 17 17 chrX 15289873 15289991 -147309939 + MER94 DNA DNA 16 133 -1 425 117 0 75 chrX 15290785 15290879 -147309051 - L1MA5A LINE L1 0 6297 6211 183 301 19 39 chrX 15291185 15291288 -147308642 + L2 LINE L2 1522 1622 -1692 2086 186 19 40 chrX 15291290 15291762 -147308168 - MLT1C LTR MaLR 0 467 6 758 251 212 17 chrX 15291776 15292186 -147307744 + L2 LINE L2 1642 2131 -1183 365 269 49 94 chrX 15292204 15292427 -147307503 - L1MC4 LINE L1 -1 8041 7829 2165 77 3 18 chrX 15292502 15292840 -147307090 - AluY SINE Alu 0 334 1 1737 208 58 2 chrX 15292840 15293325 -147306605 - L1M4 LINE L1 -3059 3087 2576 386 208 40 48 chrX 15293347 15293387 -147306543 - L1MDb LINE L1 -6265 144 105 1849 154 32 0 chrX 15293387 15293672 -147306258 + AluJo SINE Alu 1 294 -18 386 208 40 48 chrX 15293672 15293756 -147306174 - L1MDb LINE L1 -6304 105 21 261 304 95 47 chrX 15293821 15293969 -147305961 - MIR3 SINE MIR -5 203 49 1151 154 0 96 chrX 15294559 15294631 -147305299 + MER46A DNA MER2_type 1 78 -2653 2252 99 0 0 chrX 15294631 15294915 -147305015 - AluSx SINE Alu -28 284 1 1921 87 0 30 chrX 15294917 15295207 -147304723 - AluSq SINE Alu 0 313 38 1151 154 0 96 chrX 15295207 15295391 -147304539 + MER46A DNA MER2_type 79 235 -1 1083 256 94 33 chrX 15296011 15296254 -147303676 + L2 LINE L2 91 373 -2941 684 169 64 35 chrX 15296254 15296426 -147303504 + MER5B DNA MER1_type 1 177 -1 1083 256 94 33 chrX 15296426 15296607 -147303323 + L2 LINE L2 373 541 -2773 2358 73 10 3 chrX 15297177 15297478 -147302452 + AluSq SINE Alu 2 304 -9 878 198 23 0 chrX 15297570 15297742 -147302188 + AluJb SINE Alu 137 312 0 3803 104 2 21 chrX 15298600 15298934 -147300996 - L1P LINE L1 -1250 4896 4578 2361 81 0 3 chrX 15298934 15299232 -147300698 + AluY SINE Alu 1 297 -14 3803 104 2 21 chrX 15299232 15299512 -147300418 - L1P LINE L1 -1568 4578 4294 348 267 17 0 chrX 15299535 15299651 -147300279 + MER103 DNA DNA 4 121 -45 797 242 36 59 chrX 15300505 15300724 -147299206 + MIR SINE MIR 35 248 -14 181 235 0 0 chrX 15300797 15300831 -147299099 + L2 LINE L2 3270 3303 -10 610 193 9 0 chrX 15303267 15303376 -147296554 + AluJb SINE Alu 1 110 -202 2230 211 84 24 chrX 15303476 15304145 -147295785 - L1ME2 LINE L1 -133 6031 5323 * 3190 206 83 15 chrX 15304116 15305569 -147294361 + L1MD2 LINE L1 4540 6110 -249 22 35 0 0 chrX 15305598 15305627 -147294303 + AT_rich Low_complexity Low_complexity 1 29 0 333 231 134 94 chrX 15305714 15306095 -147293835 - HAL1 LINE L1 -1112 1395 1000 312 23 45 0 chrX 15306096 15306140 -147293790 - L1PA7 LINE L1 -2 6152 6107 1631 246 122 28 chrX 15306189 15306838 -147293092 - HAL1 LINE L1 -1596 911 202 2680 187 13 19 chrX 15306838 15307363 -147292567 + ERVL LTR ERVL 1692 2213 -3551 449 291 51 15 chrX 15307366 15307562 -147292368 - HAL1 LINE L1 -2301 206 4 2001 303 57 21 chrX 15307563 15308138 -147291792 + L2 LINE L2 2159 2780 -533 2616 58 0 0 chrX 15308138 15308448 -147291482 + AluY SINE Alu 1 310 -1 2001 303 57 21 chrX 15308448 15308806 -147291124 + L2 LINE L2 2780 3124 -189 2287 98 3 0 chrX 15311621 15311916 -147288014 - AluSx SINE Alu -16 296 1 260 339 76 53 chrX 15312978 15313149 -147286781 - MIR3 SINE MIR -13 195 21 325 281 70 47 chrX 15316111 15316145 -147283785 - MIR3 SINE MIR -21 187 155 975 193 16 11 chrX 15316145 15316332 -147283598 + MER5A DNA MER1_type 2 189 0 325 281 70 47 chrX 15316332 15316425 -147283505 - MIR3 SINE MIR -53 155 57 391 291 113 0 chrX 15316513 15316654 -147283276 - L2 LINE L2 -19 3253 3097 505 234 113 0 chrX 15316896 15317020 -147282910 - MLT1J2 LTR MaLR -293 157 20 322 304 136 35 chrX 15317055 15317258 -147282672 - L2 LINE L2 -181 3091 2855 2683 119 46 7 chrX 15317258 15317670 -147282260 - MSTC LTR MaLR 0 428 1 322 304 136 35 chrX 15317670 15317723 -147282207 - L2 LINE L2 -417 2855 2809 203 146 24 0 chrX 15318565 15318606 -147281324 + (TA)n Simple_repeat Simple_repeat 1 42 0 1069 167 31 13 chrX 15318606 15318833 -147281097 - MER97c DNA MER1_type? -836 254 24 27 0 0 0 chrX 15319353 15319380 -147280550 + AT_rich Low_complexity Low_complexity 1 27 0 1235 130 27 63 chrX 15319659 15319882 -147280048 + MER20 DNA MER1_type 1 215 -4 278 228 220 11 chrX 15320116 15320240 -147279690 - Charlie8 DNA MER1_type -2141 276 136 1295 243 77 23 chrX 15320365 15320896 -147279034 + L1M4 LINE L1 4698 5257 -889 285 271 0 0 chrX 15320967 15321037 -147278893 - Charlie8 DNA MER1_type -2345 72 3 682 251 58 1 chrX 15321679 15321895 -147278035 + MIR SINE MIR 3 257 -5 259 208 0 19 chrX 15322191 15322244 -147277686 - MIR SINE MIR -64 144 93 2483 218 33 126 chrX 15322245 15323378 -147276552 + MLT1E2-int LTR MaLR 345 1371 0 2013 206 121 43 chrX 15323378 15323959 -147275971 + MLT1E2 LTR MaLR 1 626 0 314 222 0 14 chrX 15324149 15324221 -147275709 + L1M4 LINE L1 190 260 -6282 5323 193 69 68 chrX 15324276 15326163 -147273767 + L1M4 LINE L1 271 2166 -4480 253 259 9 56 chrX 15326192 15326300 -147273630 + L1M4 LINE L1 2291 2393 -4253 388 223 74 43 chrX 15326497 15326816 -147273114 + L1M4c LINE L1 1747 2167 -4217 1807 216 6 9 chrX 15326862 15327307 -147272623 + L1M4c LINE L1 2314 2758 -3624 939 190 3 58 chrX 15327304 15327599 -147272331 + L1M4c LINE L1 3198 3476 -2906 * 243 61 0 0 chrX 15327728 15327761 -147272169 + (CA)n Simple_repeat Simple_repeat 1 33 0 1783 114 0 0 chrX 15428769 15429006 -147170924 - AluSq SINE Alu -76 237 1 528 199 37 42 chrX 15429073 15429255 -147170675 - MIR SINE MIR -62 146 12 336 281 21 3 chrX 15430987 15431117 -147168813 - MER5A DNA MER1_type -46 143 1 1188 190 53 34 chrX 15431363 15431626 -147168304 + LTR16C LTR ERVL 169 436 -55 672 265 5 41 chrX 15432951 15433147 -147166783 + MER5A DNA MER1_type 1 189 0 599 187 45 15 chrX 15433155 15433274 -147166656 + MER20 DNA MER1_type 1 123 -96 2030 151 55 56 chrX 15433274 15433336 -147166594 + MLT2A2 LTR ERVL 1 62 -492 2288 119 51 20 chrX 15433336 15433689 -147166241 - THE1B LTR MaLR 0 364 1 2030 151 55 56 chrX 15433689 15434175 -147165755 + MLT2A2 LTR ERVL 62 554 0 382 111 259 12 chrX 15434175 15434256 -147165674 + MER20 DNA MER1_type 119 219 0 741 199 144 15 chrX 15435148 15435349 -147164581 - MIR SINE MIR -1 261 35 1401 186 25 31 chrX 15435450 15435768 -147164162 - MER33 DNA MER1_type -7 317 2 408 40 0 0 chrX 15436036 15436086 -147163844 + (CA)n Simple_repeat Simple_repeat 2 51 0 204 125 0 0 chrX 15436253 15436285 -147163645 + (CA)n Simple_repeat Simple_repeat 1 32 0 203 233 0 23 chrX 15436676 15436719 -147163211 + MIR SINE MIR 52 93 -115 449 220 18 18 chrX 15436763 15436872 -147163058 + MER5B DNA MER1_type 8 116 -62 1234 244 52 10 chrX 15437450 15437758 -147162172 - MLT1I LTR MaLR 0 409 89 667 199 2 2 chrX 15438193 15438325 -147161605 - MER5B DNA MER1_type 0 178 58 427 272 127 38 chrX 15438343 15438556 -147161374 + MIR SINE MIR 15 246 -16 216 67 0 0 chrX 15439295 15439325 -147160605 + (CAT)n Simple_repeat Simple_repeat 1 30 0 480 184 39 10 chrX 15440346 15440449 -147159481 + MER5A DNA MER1_type 7 112 -77 1792 169 0 3 chrX 15440829 15441142 -147158788 - AluJb SINE Alu 0 312 1 22 0 0 0 chrX 15441969 15441991 -147157939 + GC_rich Low_complexity Low_complexity 1 22 0 186 247 103 31 chrX 15442975 15443072 -147156858 - MIR SINE MIR -127 135 32 2700 210 94 36 chrX 15443583 15444429 -147155501 - L1MC4 LINE L1 0 8042 7106 327 113 0 0 chrX 15445086 15445139 -147154791 + (T)n Simple_repeat Simple_repeat 1 53 0 234 253 22 11 chrX 15445538 15445629 -147154301 - MER103 DNA DNA 0 166 75 1679 251 88 22 chrX 15445640 15446131 -147153799 - MLT1H LTR MaLR -15 534 12 288 220 153 17 chrX 15446227 15446345 -147153585 + MIR SINE MIR 129 262 0 993 159 55 28 chrX 15447576 15447758 -147152172 + MER20 DNA MER1_type 16 202 -17 290 196 39 20 chrX 15448461 15448563 -147151367 + CT-rich Low_complexity Low_complexity 3 106 0 619 184 135 0 chrX 15449957 15450118 -147149812 + MER5A DNA MER1_type 4 189 0 570 285 0 15 chrX 15450126 15450256 -147149674 - MER5A DNA MER1_type 0 189 62 790 181 10 98 chrX 15450260 15450453 -147149477 - AluJo SINE Alu -14 298 123 228 203 0 62 chrX 15450455 15450519 -147149411 - MER5A DNA MER1_type -129 60 1 312 298 221 43 chrX 15451137 15451557 -147148373 + L2 LINE L2 2814 3308 -5 260 253 96 24 chrX 15451796 15451879 -147148051 - L2 LINE L2 -17 3255 3167 636 284 54 0 chrX 15452279 15452483 -147147447 + MIR SINE MIR 47 261 -1 1805 141 14 17 chrX 15452767 15453064 -147146866 - AluJo SINE Alu -16 296 1 385 374 33 6 chrX 15453199 15453381 -147146549 + MIR SINE MIR 48 234 -28 234 0 0 0 chrX 15453576 15453602 -147146328 + (TG)n Simple_repeat Simple_repeat 1 26 0 1440 265 75 5 chrX 15454257 15454657 -147145273 + LTR16C LTR ERVL 3 430 -61 393 262 77 18 chrX 15454762 15454930 -147145000 - MER20B DNA MER1_type -604 179 2 1744 164 0 20 chrX 15455062 15455361 -147144569 - AluJo SINE Alu -19 293 1 2273 61 0 0 chrX 15455552 15455871 -147144059 + AluY SINE Alu 1 319 0 282 291 23 0 chrX 15457654 15457740 -147142190 - MIR3 SINE MIR -26 182 95 933 280 127 6 chrX 15457753 15458114 -147141816 - LTR16C LTR ERVL 0 491 87 1347 261 42 61 chrX 15458431 15459011 -147140919 + L2 LINE L2 2748 3311 -2 636 290 178 30 chrX 15459218 15459556 -147140374 + MLT1I LTR MaLR 20 407 -2 196 311 49 0 chrX 15459565 15459626 -147140304 + MIR SINE MIR 77 140 -68 804 296 51 14 chrX 15460261 15460276 -147139654 - MIR SINE MIR -10 252 239 1754 166 27 0 chrX 15460276 15460571 -147139359 + AluJb SINE Alu 1 303 -9 804 296 51 14 chrX 15460571 15460771 -147139159 - MIR SINE MIR -23 239 29 432 0 0 0 chrX 15461246 15461294 -147138636 + (CA)n Simple_repeat Simple_repeat 2 49 0 437 203 149 27 chrX 15461297 15461445 -147138485 + LTR16A1 LTR ERVL 179 344 -113 225 0 0 0 chrX 15462168 15462193 -147137737 + (GA)n Simple_repeat Simple_repeat 2 26 0 656 306 48 5 chrX 15462249 15462455 -147137475 + MIR SINE MIR 47 261 -1 690 226 138 0 chrX 15462521 15462680 -147137250 - MER5A DNA MER1_type 0 189 9 756 291 57 24 chrX 15463551 15463798 -147136132 - MIR SINE MIR 0 262 8 256 225 109 29 chrX 15463838 15463976 -147135954 + L1ME4a LINE L1 5967 6115 -6 207 0 0 0 chrX 15463979 15464002 -147135928 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2017 109 0 3 chrX 15464005 15464289 -147135641 - AluSx SINE Alu -27 285 3 652 254 161 30 chrX 15464706 15465055 -147134875 - MLT1J1 LTR MaLR -2 428 45 225 208 62 0 chrX 15465081 15465129 -147134801 - L2 LINE L2 0 3313 3263 1228 250 187 13 chrX 15465332 15465907 -147134023 - LTR50 LTR ERVL -2 521 5 403 250 93 9 chrX 15466015 15466123 -147133807 - L2 LINE L2 0 3272 3156 213 152 0 0 chrX 15466693 15466726 -147133204 - L2 LINE L2 -17 3255 3223 313 291 13 0 chrX 15466862 15466941 -147132989 + MIR3 SINE MIR 95 174 -34 602 191 116 106 chrX 15467194 15467578 -147132352 - MLT1H LTR MaLR 0 555 108 348 331 40 11 chrX 15468029 15468204 -147131726 + (CATG)n Simple_repeat Simple_repeat 1 180 0 183 80 0 0 chrX 15468612 15468637 -147131293 + (A)n Simple_repeat Simple_repeat 1 25 0 1352 238 112 20 chrX 15470119 15470782 -147129148 + L2 LINE L2 2585 3312 -1 539 283 152 5 chrX 15471412 15471603 -147128327 - MIR SINE MIR -13 249 31 308 239 284 9 chrX 15471616 15471725 -147128205 - MER91C DNA MER1_type 0 140 2 388 281 99 57 chrX 15471764 15472027 -147127903 - MLT1J LTR MaLR 0 511 238 492 212 189 8 chrX 15472263 15472395 -147127535 + MER5A DNA MER1_type 34 189 0 548 183 0 0 chrX 15472464 15472557 -147127373 - MER81 DNA DNA -2 112 20 1664 69 0 5 chrX 15474327 15474544 -147125386 - L1PA7 LINE L1 0 6154 5939 838 231 16 0 chrX 15474841 15475027 -147124903 - MER5A DNA MER1_type 0 189 1 605 312 98 9 chrX 15475965 15476180 -147123750 - MIR SINE MIR -3 259 26 428 184 0 0 chrX 15476273 15476349 -147123581 - MER116 DNA Mariner 0 80 5 316 305 161 17 chrX 15476377 15476451 -147123479 + L1ME2 LINE L1 5765 5827 -343 210 37 0 0 chrX 15476451 15476478 -147123452 + (TA)n Simple_repeat Simple_repeat 2 28 0 316 305 161 17 chrX 15476478 15476577 -147123353 + L1ME2 LINE L1 5827 5963 -207 387 0 0 0 chrX 15476587 15476630 -147123300 + (TG)n Simple_repeat Simple_repeat 2 44 0 312 303 61 20 chrX 15476678 15476777 -147123153 + LTR16C LTR ERVL 150 252 -239 198 0 0 0 chrX 15476804 15476826 -147123104 + (TA)n Simple_repeat Simple_repeat 2 23 0 1894 223 60 91 chrX 15477002 15477604 -147122326 - MLT1E LTR MaLR 0 593 11 479 281 61 57 chrX 15477983 15478211 -147121719 + MIR SINE MIR 19 247 -15 238 188 0 0 chrX 15478384 15478432 -147121498 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 1134 278 76 11 chrX 15479103 15479485 -147120445 + LTR16C LTR ERVL 76 482 -9 207 0 0 0 chrX 15479870 15479893 -147120037 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 414 0 0 0 chrX 15481052 15481098 -147118832 + (CA)n Simple_repeat Simple_repeat 1 46 0 1519 255 60 13 chrX 15481587 15482054 -147117876 - LTR16C LTR ERVL -2 489 1 226 250 0 0 chrX 15482228 15482300 -147117630 + L1ME2 LINE L1 6093 6164 0 236 195 0 0 chrX 15482763 15482804 -147117126 + L2 LINE L2 3221 3261 -11 1192 192 19 0 chrX 15483703 15483911 -147116019 - MER20 DNA MER1_type -7 212 1 288 205 13 51 chrX 15484149 15484227 -147115703 - MER116 DNA Mariner 0 80 6 24 0 0 0 chrX 15484446 15484470 -147115460 + AT_rich Low_complexity Low_complexity 1 24 0 1416 209 71 77 chrX 15484470 15484948 -147114982 + MLT1H LTR MaLR 73 547 -2 1962 114 10 13 chrX 15485453 15485751 -147114179 - AluJb SINE Alu -6 306 10 336 321 9 0 chrX 15485915 15486024 -147113906 + L2 LINE L2 3144 3253 -19 180 111 0 0 chrX 15486033 15486060 -147113870 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 239 275 11 55 chrX 15486061 15486152 -147113778 - MIR3 SINE MIR -13 195 109 346 241 17 35 chrX 15487158 15487332 -147112598 + GA-rich Low_complexity Low_complexity 2 172 0 194 274 164 0 chrX 15487849 15487922 -147112008 + MIR SINE MIR 177 261 -1 333 0 0 0 chrX 15488125 15488162 -147111768 + (TTA)n Simple_repeat Simple_repeat 3 39 0 33761 89 7 9 chrX 15488163 15494309 -147105621 - L1PA6 LINE L1 -19 6135 11 319 176 118 0 chrX 15494335 15494403 -147105527 - MIR SINE MIR -81 181 106 624 297 87 58 chrX 15494505 15495246 -147104684 + L2 LINE L2 2544 3303 -10 255 140 70 53 chrX 15497463 15497520 -147102410 - L2 LINE L2 0 3272 3215 686 277 33 5 chrX 15497876 15498060 -147101870 + MIR SINE MIR 15 203 -59 298 189 0 0 chrX 15498267 15498320 -147101610 + MIR SINE MIR 209 261 -1 237 139 0 0 chrX 15498412 15498455 -147101475 + (TG)n Simple_repeat Simple_repeat 2 44 0 203 125 25 0 chrX 15498926 15498966 -147100964 + CT-rich Low_complexity Low_complexity 2 42 0 742 216 189 96 chrX 15499141 15499590 -147100340 + LTR16C LTR ERVL 1 491 0 669 203 68 82 chrX 15499800 15500007 -147099923 - L2 LINE L2 -1 3312 3109 433 291 8 0 chrX 15502167 15502284 -147097646 + MIR SINE MIR 35 152 -110 445 255 174 0 chrX 15502629 15502790 -147097140 - L2 LINE L2 -10 3303 3115 819 138 0 0 chrX 15504482 15504598 -147095332 - FLAM_C SINE Alu -25 118 3 622 161 18 0 chrX 15504673 15504785 -147095145 + MIR SINE MIR 77 190 -72 321 26 0 0 chrX 15505208 15505246 -147094684 + (TAA)n Simple_repeat Simple_repeat 2 39 0 350 285 43 25 chrX 15505541 15505659 -147094271 + MIR SINE MIR 34 154 -54 515 246 30 22 chrX 15507536 15507670 -147092260 - MLT1L LTR MaLR -164 451 317 228 180 11 124 chrX 15507713 15507802 -147092128 - MLT1J2 LTR MaLR -315 135 57 209 316 0 40 chrX 15507912 15507988 -147091942 - L2 LINE L2 -188 3084 3012 309 208 20 119 chrX 15508114 15508215 -147091715 + MIR3 SINE MIR 88 178 -30 614 302 55 8 chrX 15508351 15508586 -147091344 + MIR SINE MIR 2 247 -15 5920 82 4 31 chrX 15508643 15509488 -147090442 - L1PB1 LINE L1 -1 6150 5329 1320 298 62 24 chrX 15509560 15510178 -147089752 + L1ME4a LINE L1 5457 6097 -24 243 0 0 0 chrX 15511488 15511515 -147088415 + (TG)n Simple_repeat Simple_repeat 2 28 0 254 256 62 31 chrX 15512303 15512432 -147087498 + L1MC5 LINE L1 7777 7909 -52 187 189 0 0 chrX 15512498 15512535 -147087395 - MIR SINE MIR -161 101 65 511 297 87 31 chrX 15512574 15512803 -147087127 + MIR SINE MIR 1 242 -20 273 210 0 0 chrX 15513305 15513367 -147086563 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 493 275 44 19 chrX 15513511 15513671 -147086259 - MIR SINE MIR -17 245 82 209 98 24 0 chrX 15513730 15513771 -147086159 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 1348 236 88 24 chrX 15514160 15514571 -147085359 - LTR16A1 LTR ERVL -20 437 1 849 191 155 58 chrX 15516173 15516554 -147083376 - MLT1J1 LTR MaLR 0 450 11 2526 55 0 19 chrX 15516594 15516902 -147083028 - AluY SINE Alu -9 302 1 758 306 42 4 chrX 15517956 15518196 -147081734 - MIR SINE MIR -10 252 6 2123 247 98 9 chrX 15518257 15518893 -147081037 - L1ME3A LINE L1 -26 6144 5453 749 152 80 7 chrX 15518928 15519079 -147080851 - L1MC3 LINE L1 -6 7779 7618 22 80 0 0 chrX 15519085 15519135 -147080795 + AT_rich Low_complexity Low_complexity 1 50 0 405 306 20 14 chrX 15519330 15519477 -147080453 + MER5A DNA MER1_type 38 185 -4 324 64 0 0 chrX 15519748 15519795 -147080135 + (GA)n Simple_repeat Simple_repeat 1 47 0 303 313 9 18 chrX 15520209 15520321 -147079609 + GA-rich Low_complexity Low_complexity 3 113 0 212 274 107 2 chrX 15521312 15521408 -147078522 - MIR SINE MIR -62 146 70 231 103 0 0 chrX 15521673 15521712 -147078218 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 289 111 0 0 chrX 15522260 15522305 -147077625 - L1MA7 LINE L1 -4 6287 6243 1780 177 6 22 chrX 15522311 15522622 -147077308 - AluJo SINE Alu -6 306 1 31 44 0 0 chrX 15523497 15523542 -147076388 + AT_rich Low_complexity Low_complexity 1 45 0 360 0 0 0 chrX 15523705 15523745 -147076185 + (CA)n Simple_repeat Simple_repeat 1 40 0 499 255 38 25 chrX 15523751 15523908 -147076022 + MER103 DNA DNA 8 166 0 995 204 31 26 chrX 15526329 15526555 -147073375 - MIR SINE MIR -3 259 33 321 303 50 17 chrX 15526767 15526886 -147073044 - L2 LINE L2 -2 3311 3189 997 173 23 51 chrX 15527092 15527306 -147072624 + MER3 DNA MER1_type 2 209 0 2026 136 13 0 chrX 15527383 15527691 -147072239 - AluJo SINE Alu 0 312 1 436 276 56 122 chrX 15528657 15528994 -147070936 - L2 LINE L2 -115 3157 2843 515 277 29 0 chrX 15531991 15532128 -147067802 - MIR SINE MIR -8 254 114 1820 112 0 0 chrX 15532567 15532809 -147067121 + AluSq SINE Alu 1 242 -71 250 111 0 0 chrX 15534556 15534601 -147065329 - LTR66 LTR ERVL -171 439 395 243 133 0 0 chrX 15534563 15534608 -147065322 + LTR66 LTR ERVL 395 439 -171 * 345 221 0 53 chrX 15534639 15534734 -147065196 - L1MC4 LINE L1 -1339 6703 6614 316 300 22 0 chrX 15534658 15534748 -147065182 + L1MC4 LINE L1 6612 6703 -1339 * 1716 159 19 0 chrX 15534754 15535024 -147064906 - AluJb SINE Alu -37 275 1 199 289 87 67 chrX 15535462 15535566 -147064364 + L2 LINE L2 3149 3254 -18 1784 183 24 5 chrX 15535887 15536258 -147063672 - MER3 DNA MER1_type 0 2611 2234 545 219 0 9 chrX 15536266 15536380 -147063550 - MER3 DNA MER1_type -87 122 57 1435 274 26 38 chrX 15538459 15538911 -147061019 + MLT1J2 LTR MaLR 1 447 -3 261 302 138 17 chrX 15539397 15539513 -147060417 + L2 LINE L2 3182 3311 -2 640 306 90 77 chrX 15539899 15540914 -147059016 - L2 LINE L2 -3 3310 2251 321 246 271 0 chrX 15541283 15541405 -147058525 + MIR3 SINE MIR 48 202 -6 22 0 0 0 chrX 15542391 15542413 -147057517 + AT_rich Low_complexity Low_complexity 1 22 0 1705 162 0 36 chrX 15542413 15542715 -147057215 - AluJo SINE Alu -21 291 1 379 165 37 73 chrX 15542784 15542893 -147057037 + MLT1J1 LTR MaLR 1 105 -341 1838 228 66 0 chrX 15543785 15544223 -147055707 - L1ME3A LINE L1 0 6170 5704 1911 165 83 70 chrX 15544373 15544889 -147055041 - Charlie1b DNA MER1_type 0 523 1 1758 136 12 81 chrX 15545101 15545520 -147054410 - Charlie5 DNA MER1_type 0 2624 2235 771 197 7 0 chrX 15545499 15545646 -147054284 - MER3 DNA MER1_type -21 188 41 * 939 244 0 0 chrX 15548198 15548395 -147051535 + MIR SINE MIR 56 252 -10 278 143 0 0 chrX 15549714 15549756 -147050174 + 5S rRNA rRNA 1 42 -79 851 239 33 16 chrX 15549887 15550267 -147049663 + LTR16A1 LTR ERVL 2 457 0 680 244 28 22 chrX 15550296 15550476 -147049454 - MER5A DNA MER1_type -7 182 2 250 330 0 9 chrX 15551122 15551228 -147048702 - MIR SINE MIR -1 261 157 570 296 108 38 chrX 15551293 15551637 -147048293 - MLT1J LTR MaLR -110 401 34 396 250 0 0 chrX 15551674 15551770 -147048160 - MIR SINE MIR -100 162 67 441 167 0 0 chrX 15552004 15552082 -147047848 - L2 LINE L2 -15 3298 3221 458 235 125 0 chrX 15552099 15552235 -147047695 + MIR SINE MIR 58 210 -52 229 182 18 18 chrX 15552275 15552330 -147047600 + (TTA)n Simple_repeat Simple_repeat 3 57 0 288 148 16 16 chrX 15554576 15554637 -147045293 - MER5A DNA MER1_type -103 86 26 521 86 11 43 chrX 15556454 15556547 -147043383 + MER5B DNA MER1_type 72 161 -17 24 32 0 0 chrX 15557851 15557882 -147042048 + AT_rich Low_complexity Low_complexity 1 31 0 447 306 111 17 chrX 15558014 15558249 -147041681 + MIR SINE MIR 2 258 -4 186 286 74 89 chrX 15558699 15558804 -147041126 - L2 LINE L2 -12 3260 3155 1724 142 36 127 chrX 15558804 15559275 -147040655 - MSTC LTR MaLR 0 428 1 186 286 74 89 chrX 15559275 15559438 -147040492 - L2 LINE L2 -117 3155 2996 216 0 0 0 chrX 15560587 15560611 -147039319 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 195 100 0 0 chrX 15561239 15561269 -147038661 + (A)n Simple_repeat Simple_repeat 1 30 0 216 0 0 0 chrX 15561422 15561446 -147038484 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2108 94 0 11 chrX 15561446 15561722 -147038208 - AluSc SINE Alu -36 273 1 241 293 30 0 chrX 15561760 15561859 -147038071 + MIR SINE MIR 161 262 0 523 271 18 30 chrX 15562578 15562744 -147037186 - MIR SINE MIR -78 184 21 222 37 0 0 chrX 15562753 15562780 -147037150 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 207 316 102 58 chrX 15563793 15563999 -147035931 + L2 LINE L2 2869 3083 -189 21 0 0 0 chrX 15564659 15564680 -147035250 + AT_rich Low_complexity Low_complexity 1 21 0 273 57 0 0 chrX 15565401 15565436 -147034494 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1707 155 36 11 chrX 15565439 15565716 -147034214 - AluJo SINE Alu -26 286 3 192 125 31 0 chrX 15566833 15566865 -147033065 + MER5B DNA MER1_type 146 178 0 1192 236 125 34 chrX 15567563 15568025 -147031905 - MLT1H LTR MaLR -1 548 4 698 266 27 5 chrX 15568230 15568418 -147031512 + MIR SINE MIR 1 192 -70 21 0 0 0 chrX 15569051 15569072 -147030858 + AT_rich Low_complexity Low_complexity 1 21 0 214 298 95 0 chrX 15569830 15569914 -147030016 - MIR3 SINE MIR -5 203 112 1084 176 70 18 chrX 15571043 15571270 -147028660 - MLT1J2 LTR MaLR -205 245 7 1266 214 0 0 chrX 15571432 15571656 -147028274 + MER58A DNA MER1_type 1 224 0 3977 118 22 5 chrX 15571732 15572358 -147027572 + L1MA5 LINE L1 5658 6294 -6 262 216 182 34 chrX 15572424 15572512 -147027418 + L2 LINE L2 3192 3292 -21 560 232 55 76 chrX 15572640 15572877 -147027053 - MIR SINE MIR -6 256 25 231 114 0 0 chrX 15572880 15572915 -147027015 + (T)n Simple_repeat Simple_repeat 1 35 0 463 214 45 0 chrX 15573303 15573415 -147026515 - MER5A DNA MER1_type -39 150 34 29 60 0 0 chrX 15575642 15575692 -147024238 + GC_rich Low_complexity Low_complexity 1 50 0 313 258 22 11 chrX 15578380 15578469 -147021461 - MLT1J2 LTR MaLR -2 448 359 607 174 95 2 chrX 15578495 15578704 -147021226 - MLT1J2 LTR MaLR -147 303 53 212 321 24 12 chrX 15578957 15579041 -147020889 - MIR SINE MIR -107 101 17 1063 221 9 0 chrX 15579216 15579438 -147020492 - MIR SINE MIR -36 226 3 369 241 107 70 chrX 15579877 15580323 -147019607 - MLT1G1 LTR MaLR -8 587 39 1648 56 0 14 chrX 15580731 15580946 -147018984 - L1PA8 LINE L1 -1 6171 5960 1501 237 23 6 chrX 15581243 15581593 -147018337 + LTR16A LTR ERVL 82 437 -13 4235 194 73 50 chrX 15582706 15584795 -147015135 - L1ME2 LINE L1 0 6164 4026 2585 24 7 3 chrX 15584795 15585088 -147014842 - AluY SINE Alu -2 309 16 4235 194 73 50 chrX 15585088 15585121 -147014809 - L1ME2 LINE L1 -2138 4026 3995 1068 250 53 3 chrX 15585108 15585408 -147014522 - L1ME2 LINE L1 -2466 3680 3366 * 344 122 0 40 chrX 15586080 15586154 -147013776 + (TGAA)n Simple_repeat Simple_repeat 1 71 0 345 238 2 33 chrX 15586172 15586285 -147013645 - MLT1I LTR MaLR 0 450 318 576 251 37 25 chrX 15586287 15586450 -147013480 - MLT1J2 LTR MaLR -219 231 67 1724 172 3 31 chrX 15587447 15587738 -147012192 + AluJb SINE Alu 1 283 -29 665 291 29 0 chrX 15587918 15588128 -147011802 + L2 LINE L2 2843 3058 -255 1271 195 29 0 chrX 15588128 15588374 -147011556 - LTR16C LTR ERVL 0 491 239 422 282 204 19 chrX 15588547 15588763 -147011167 + L2 LINE L2 3056 3311 -2 278 376 96 0 chrX 15591019 15591144 -147008786 - L2 LINE L2 0 3272 3136 1370 239 86 18 chrX 15591599 15591996 -147007934 - MLT1J2 LTR MaLR -6 444 21 543 303 13 42 chrX 15592167 15592405 -147007525 + L2 LINE L2 3083 3313 0 181 313 81 10 chrX 15592398 15592497 -147007433 - L2 LINE L2 -190 3082 2977 * 549 0 0 0 chrX 15592654 15592715 -147007215 + (CA)n Simple_repeat Simple_repeat 2 62 0 298 351 144 5 chrX 15592894 15593096 -147006834 + MIR SINE MIR 20 249 -13 356 169 39 0 chrX 15593217 15593294 -147006636 + MER116 DNA Mariner 1 80 0 548 81 14 0 chrX 15593894 15593968 -147005962 + MER116 DNA Mariner 5 79 -1 950 321 35 12 chrX 15594752 15595095 -147004835 + L1MC4a LINE L1 6450 6800 -1008 310 173 67 0 chrX 15596350 15596425 -147003505 - MER116 DNA Mariner 0 80 1 801 209 63 0 chrX 15596448 15596606 -147003324 + MER5A DNA MER1_type 16 183 -6 297 305 21 11 chrX 15597161 15597256 -147002674 + L1ME4a LINE L1 5728 5823 -298 1433 167 33 0 chrX 15597292 15597455 -147002475 - AluJb SINE Alu -20 292 117 234 0 0 0 chrX 15597455 15597481 -147002449 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1433 167 33 0 chrX 15597481 15597557 -147002373 - AluJb SINE Alu -195 117 45 251 221 214 39 chrX 15597586 15597740 -147002190 + L1ME4a LINE L1 5880 6060 -61 219 36 0 0 chrX 15597743 15597771 -147002159 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 237 33 0 0 chrX 15597770 15597800 -147002130 + (GA)n Simple_repeat Simple_repeat 1 30 0 2695 125 47 2 chrX 15597800 15598207 -147001723 - MSTA LTR MaLR -3 425 1 239 268 45 62 chrX 15598316 15598428 -147001502 + L2 LINE L2 3158 3267 -5 343 307 95 15 chrX 15599758 15599895 -147000035 + MIR3 SINE MIR 12 159 -49 752 207 36 131 chrX 15599895 15600097 -146999833 + MER112 DNA MER1_type 1 172 -88 386 71 36 0 chrX 15600097 15600153 -146999777 - L1PA7 LINE L1 0 6154 6097 752 207 36 131 chrX 15600153 15600225 -146999705 + MER112 DNA MER1_type 172 249 -11 450 242 67 8 chrX 15601032 15601152 -146998778 - MIR3 SINE MIR -38 170 44 500 310 44 35 chrX 15602919 15603148 -146996782 + MIR SINE MIR 11 241 -21 2962 82 3 14 chrX 15603370 15603738 -146996192 + THE1B LTR MaLR 1 364 0 2090 191 87 16 chrX 15603751 15603910 -146996020 - MLT1E1 LTR MaLR -2 652 506 222 37 0 0 chrX 15603910 15603937 -146995993 + (CATCT)n Simple_repeat Simple_repeat 4 30 0 2090 191 87 16 chrX 15603937 15604317 -146995613 - MLT1E1 LTR MaLR -148 506 1 313 268 12 12 chrX 15605383 15605465 -146994465 + L2 LINE L2 3193 3274 -39 332 306 89 16 chrX 15605593 15605717 -146994213 - MER5A DNA MER1_type -2 187 55 254 286 29 29 chrX 15605624 15605729 -146994201 + MER5A DNA MER1_type 53 157 -32 * 1178 182 43 16 chrX 15607433 15607691 -146992239 - MER20B DNA MER1_type -5 778 514 604 239 221 26 chrX 15607763 15608035 -146991895 - MER20B DNA MER1_type -458 325 1 349 271 60 61 chrX 15608039 15608190 -146991740 - MIR3 SINE MIR -53 155 4 340 305 38 126 chrX 15608940 15609179 -146990751 + L2 LINE L2 3054 3271 -1 270 352 106 21 chrX 15610106 15610248 -146989682 - L2 LINE L2 -97 3175 3022 21 36 0 0 chrX 15610386 15610414 -146989516 + AT_rich Low_complexity Low_complexity 1 28 0 302 255 27 27 chrX 15611294 15611422 -146988508 + MER63 DNA MER1_type 709 1061 0 201 94 0 0 chrX 15611507 15611539 -146988391 + (TTG)n Simple_repeat Simple_repeat 2 33 0 828 236 25 20 chrX 15612214 15612413 -146987517 + MIR SINE MIR 53 252 -10 677 248 178 5 chrX 15614042 15614256 -146985674 + MIR SINE MIR 12 262 0 498 313 114 0 chrX 15614289 15614455 -146985475 + MIR SINE MIR 5 189 -73 1064 241 114 50 chrX 15614592 15615032 -146984898 + L1ME4a LINE L1 5514 5981 -140 555 214 0 0 chrX 15615040 15615129 -146984801 + MER119 DNA MER1_type 1 89 -494 464 312 115 15 chrX 15616926 15617266 -146982664 + HAL1b LINE L1 481 854 -494 1400 289 49 29 chrX 15617684 15618383 -146981547 + L1MC4a LINE L1 3243 3955 -2191 186 133 0 0 chrX 15618400 15618430 -146981500 + (TA)n Simple_repeat Simple_repeat 2 31 0 2078 259 94 37 chrX 15618440 15618991 -146980939 + L1MC4a LINE L1 4370 4888 -1258 971 199 147 5 chrX 15618991 15619182 -146980748 - MER20 DNA MER1_type 0 219 2 2078 259 94 37 chrX 15619182 15619657 -146980273 + L1MC4a LINE L1 4888 5334 -812 2198 89 10 7 chrX 15619657 15619948 -146979982 + AluJb SINE Alu 21 312 0 2078 259 94 37 chrX 15619948 15620393 -146979537 + L1MC4a LINE L1 5334 5325 -821 2181 158 12 0 chrX 15620393 15620735 -146979195 + MER7A DNA MER2_type 2 345 -1 2078 259 94 37 chrX 15620735 15620779 -146979151 + L1MC4a LINE L1 5324 5364 -782 192 40 0 0 chrX 15620916 15620941 -146978989 + (CA)n Simple_repeat Simple_repeat 2 26 0 1399 153 51 45 chrX 15621466 15621799 -146978131 + L1MC4a LINE L1 5983 6317 -1491 1947 109 11 18 chrX 15621893 15622177 -146977753 + AluSx SINE Alu 17 298 -14 1737 147 0 87 chrX 15622463 15622796 -146977134 + AluJb SINE Alu 1 304 -8 195 100 0 0 chrX 15622818 15622848 -146977082 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1159 109 0 29 chrX 15623612 15623782 -146976148 + FRAM SINE Alu 5 170 -2 2222 89 7 14 chrX 15623782 15624074 -146975856 - AluY SINE Alu -21 290 1 2200 191 80 14 chrX 15625169 15625396 -146974534 + L1MC4a LINE L1 7273 7484 -324 1539 166 22 26 chrX 15625396 15625694 -146974236 + AluJo SINE Alu 14 310 0 2200 191 80 14 chrX 15625694 15625967 -146973963 + L1MC4a LINE L1 7484 7807 -1 315 0 0 0 chrX 15625967 15626002 -146973928 + (CA)n Simple_repeat Simple_repeat 2 36 0 372 242 30 10 chrX 15626349 15626448 -146973482 - MER117 DNA MER1_type -8 189 89 237 321 45 36 chrX 15628310 15628422 -146971508 - L2 LINE L2 -490 2824 2712 857 232 75 31 chrX 15628540 15628794 -146971136 + ERVL LTR ERVL 2365 2629 -3135 1453 227 176 58 chrX 15628974 15629683 -146970247 - LTR50 LTR ERVL -2 793 1 1562 193 64 9 chrX 15629903 15630230 -146969700 + L1MD2 LINE L1 5788 6132 -227 23 0 0 0 chrX 15630977 15631000 -146968930 + AT_rich Low_complexity Low_complexity 1 23 0 1492 170 147 93 chrX 15631206 15631723 -146968207 - L1ME3 LINE L1 -254 5908 5364 225 67 0 0 chrX 15631723 15631768 -146968162 + LTR66 LTR ERVL 394 438 -172 225 67 0 0 chrX 15631730 15631775 -146968155 - LTR66 LTR ERVL -172 438 394 297 0 0 0 chrX 15631838 15631871 -146968059 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chrX 15631870 15631890 -146968040 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 275 340 49 15 chrX 15633891 15634094 -146965836 - L1MEd LINE L1 -5314 805 596 4050 95 7 13 chrX 15634509 15635065 -146964865 - L1PB2 LINE L1 -6 6145 5593 1598 78 5 0 chrX 15635070 15635274 -146964656 - L1PA13 LINE L1 -3 6160 5956 2346 105 3 0 chrX 15636439 15636743 -146963187 - AluSx SINE Alu -7 305 1 915 212 59 18 chrX 15637083 15637253 -146962677 - MER45A DNA AcHobo -1 177 1 21 0 0 0 chrX 15637349 15637370 -146962560 + AT_rich Low_complexity Low_complexity 1 21 0 1046 219 21 17 chrX 15637540 15637778 -146962152 - MIR SINE MIR -21 241 3 974 168 11 14 chrX 15637798 15638227 -146961703 + GA-rich Low_complexity Low_complexity 1 428 0 1010 102 17 6 chrX 15638232 15638409 -146961521 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 926 130 20 17 chrX 15638412 15638712 -146961218 + GA-rich Low_complexity Low_complexity 1 301 0 336 138 0 0 chrX 15639409 15639474 -146960456 + (TC)n Simple_repeat Simple_repeat 2 66 0 411 73 0 0 chrX 15643203 15643258 -146956672 + (TG)n Simple_repeat Simple_repeat 1 55 0 252 0 0 0 chrX 15648026 15648054 -146951876 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 726 54 0 0 chrX 15648682 15648775 -146951155 + L1PB1 LINE L1 6058 6150 -1 294 89 71 0 chrX 15648778 15648834 -146951096 + L1MA7 LINE L1 6232 6291 0 362 280 98 8 chrX 15649696 15649828 -146950102 + MIR SINE MIR 4 147 -115 204 125 0 0 chrX 15650204 15650236 -146949694 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 596 247 7 7 chrX 15650463 15650613 -146949317 - L1MC5 LINE L1 -76 7885 7736 2489 80 0 10 chrX 15650701 15651014 -146948916 - AluSx SINE Alu -2 310 1 283 336 96 0 chrX 15651134 15651238 -146948692 + L2 LINE L2 3141 3254 -18 204 111 0 0 chrX 15653983 15654019 -146945911 + (TG)n Simple_repeat Simple_repeat 2 37 0 1801 70 4 0 chrX 15655592 15655819 -146944111 + AluSq SINE Alu 82 309 -4 686 261 152 0 chrX 15656081 15656265 -146943665 - MIR SINE MIR -28 234 23 237 33 0 0 chrX 15656895 15656925 -146943005 + (C)n Simple_repeat Simple_repeat 1 30 0 2362 107 0 0 chrX 15659043 15659351 -146940579 + AluSx SINE Alu 1 308 -4 512 307 92 5 chrX 15659517 15659735 -146940195 - MIR SINE MIR -6 256 20 811 238 70 23 chrX 15659875 15660089 -146939841 - MIR SINE MIR -21 241 18 186 336 94 16 chrX 15660224 15660352 -146939578 - L2 LINE L2 -228 3044 2907 235 188 21 0 chrX 15660511 15660559 -146939371 - MER58 DNA MER1_type -5 2415 2367 1528 123 156 62 chrX 15660565 15660873 -146939057 - MER1B DNA MER1_type -2 337 1 284 284 10 10 chrX 15660878 15660980 -146938950 - L2 LINE L2 -448 2866 2765 500 200 8 67 chrX 15661046 15661092 -146938838 + MIR SINE MIR 63 110 -152 1386 71 77 0 chrX 15661092 15661131 -146938799 - MER107 DNA MER1_type 0 197 162 182 36 0 36 chrX 15661131 15661159 -146938771 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1386 71 77 0 chrX 15661159 15661301 -146938629 - MER107 DNA MER1_type -35 162 2 500 200 8 67 chrX 15661301 15661374 -146938556 + MIR SINE MIR 110 175 -87 21 36 0 0 chrX 15661424 15661452 -146938478 + AT_rich Low_complexity Low_complexity 1 28 0 344 125 0 100 chrX 15661731 15661811 -146938119 + L1MC3 LINE L1 7616 7687 -98 483 281 114 6 chrX 15662124 15662291 -146937639 + L1MC/D LINE L1 5627 5811 -1997 866 198 35 10 chrX 15662331 15662528 -146937402 - L1ME3A LINE L1 -201 5969 5768 199 200 0 0 chrX 15663046 15663081 -146936849 - L3 LINE CR1 -13 1564 1530 695 290 0 5 chrX 15663815 15664001 -146935929 - L1ME3A LINE L1 -436 5728 5544 25 31 0 0 chrX 15665388 15665420 -146934510 + AT_rich Low_complexity Low_complexity 1 32 0 342 279 42 91 chrX 15666862 15667170 -146932760 + L2 LINE L2 2817 3109 -163 529 254 53 18 chrX 15667281 15667450 -146932480 - MIR SINE MIR -79 183 9 907 204 39 6 chrX 15667459 15667640 -146932290 - MER5A DNA MER1_type -2 187 1 210 301 57 49 chrX 15667679 15667722 -146932208 + L2 LINE L2 3175 3216 -97 1693 142 0 8 chrX 15667722 15667982 -146931948 - AluJb SINE Alu -54 258 1 210 301 57 49 chrX 15667982 15668061 -146931869 + L2 LINE L2 3216 3298 -15 294 29 0 0 chrX 15668064 15668099 -146931831 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 322 295 16 8 chrX 15670006 15670128 -146929802 - MIR SINE MIR 0 262 140 22 0 0 0 chrX 15672049 15672071 -146927859 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 15674422 15674443 -146925487 + AT_rich Low_complexity Low_complexity 1 21 0 289 261 123 14 chrX 15676274 15676412 -146923518 + Charlie7 DNA MER1_type 11 163 -2449 596 214 60 59 chrX 15676984 15677012 -146922918 + Charlie7 DNA MER1_type 346 372 -2240 652 232 61 0 chrX 15677012 15677176 -146922754 - MER104 DNA MER2_type -2 178 5 596 214 60 59 chrX 15677176 15677433 -146922497 + Charlie7 DNA MER1_type 372 719 -1893 1193 231 39 52 chrX 15677457 15677899 -146922031 + L1MC5 LINE L1 7478 7913 -48 1057 236 60 39 chrX 15677903 15678289 -146921641 + Charlie7 DNA MER1_type 717 1110 -1502 1959 102 8 0 chrX 15678749 15679004 -146920926 + AluSx SINE Alu 1 257 -55 681 229 49 7 chrX 15679013 15679269 -146920661 - MLT1J2 LTR MaLR -109 341 1 259 227 0 15 chrX 15679900 15679966 -146919964 + L2 LINE L2 3159 3223 -90 325 230 0 23 chrX 15680428 15680515 -146919415 + HsTC2 DNA Tc2 2 86 -1812 297 296 21 99 chrX 15680795 15681079 -146918851 - L2 LINE L2 -44 3228 2967 873 186 30 74 chrX 15681310 15681370 -146918560 - MLT1F1 LTR MaLR -13 554 493 189 0 0 0 chrX 15681370 15681391 -146918539 + (TC)n Simple_repeat Simple_repeat 2 22 0 2236 92 0 20 chrX 15681391 15681683 -146918247 - AluSx SINE Alu -26 286 1 873 186 30 74 chrX 15681683 15681852 -146918078 - MLT1F1 LTR MaLR -72 495 334 532 243 66 7 chrX 15682167 15682319 -146917611 - MLT1F1 LTR MaLR -381 161 1 669 313 117 21 chrX 15682319 15682413 -146917517 + L1ME4a LINE L1 5380 5464 -657 2168 118 0 3 chrX 15682413 15682719 -146917211 + L1PA16 LINE L1 5858 6162 -4 669 313 117 21 chrX 15682719 15683094 -146916836 + L1ME4a LINE L1 5464 5894 -227 667 178 9 0 chrX 15683560 15683667 -146916263 + FLAM_A SINE Alu 1 108 -34 472 261 0 0 chrX 15684728 15684839 -146915091 - MLT1J LTR MaLR -142 369 259 231 333 78 31 chrX 15694593 15694848 -146905082 + L2 LINE L2 2844 3110 -203 234 62 0 0 chrX 15696938 15696970 -146902960 + (TC)n Simple_repeat Simple_repeat 1 32 0 577 264 74 44 chrX 15697380 15697798 -146902132 + MLT1F1 LTR MaLR 18 506 -61 1570 160 0 8 chrX 15698078 15698328 -146901602 - AluJb SINE Alu -64 248 1 342 314 87 79 chrX 15699368 15699772 -146900158 - MLT1I LTR MaLR -2 407 1 273 293 12 0 chrX 15699970 15700052 -146899878 - Charlie8 DNA MER1_type -2235 182 100 41618 31 23 1 chrX 15700853 15706866 -146893064 - L1PA3 LINE L1 -1 6154 3 232 293 13 0 chrX 15707515 15707590 -146892340 - MER5B DNA MER1_type -98 80 5 643 262 21 0 chrX 15709332 15709473 -146890457 - MIR SINE MIR -102 160 17 258 221 44 0 chrX 15709671 15709739 -146890191 + Charlie7 DNA MER1_type 35 105 -2507 * 323 216 39 46 chrX 15709706 15709859 -146890071 + Charlie7 DNA MER1_type 2420 2571 -41 593 276 56 80 chrX 15710114 15710400 -146889530 - L2 LINE L2 -1 3271 2993 768 191 0 0 chrX 15710414 15710545 -146889385 + FLAM_C SINE Alu 1 131 -2 343 358 62 38 chrX 15710757 15711176 -146888754 - L2 LINE L2 -565 2749 2321 399 211 0 0 chrX 15711191 15711281 -146888649 + GA-rich Low_complexity Low_complexity 1 90 0 276 257 14 14 chrX 15711648 15711718 -146888212 + GA-rich Low_complexity Low_complexity 3 72 0 24 32 0 0 chrX 15711730 15711761 -146888169 + AT_rich Low_complexity Low_complexity 1 31 0 185 295 295 0 chrX 15712028 15712133 -146887797 - L2 LINE L2 -8 3264 3129 721 71 43 64 chrX 15713797 15713937 -146885993 - L1MB8 LINE L1 0 6178 6042 360 331 129 30 chrX 15713959 15714222 -146885708 + L3b LINE CR1 1103 1391 -192 360 287 46 9 chrX 15714598 15714663 -146885267 - L2 LINE L2 -3 3269 3197 760 209 163 46 chrX 15714663 15714859 -146885071 + MER20 DNA MER1_type 1 219 0 360 287 46 9 chrX 15714859 15714901 -146885029 - L2 LINE L2 -75 3197 3158 1833 126 44 14 chrX 15715193 15715358 -146884572 - AluJb SINE Alu -8 304 125 405 0 0 0 chrX 15715358 15715403 -146884527 + (TG)n Simple_repeat Simple_repeat 2 46 0 1833 126 44 14 chrX 15715403 15715531 -146884399 - AluJb SINE Alu -187 125 2 229 129 0 15 chrX 15716286 15716325 -146883605 + MIR SINE MIR 106 144 -64 230 244 0 0 chrX 15716411 15716456 -146883474 + polypyrimidine Low_complexity Low_complexity 2 46 0 189 0 0 0 chrX 15718466 15718487 -146881443 + (A)n Simple_repeat Simple_repeat 1 21 0 1238 186 5 18 chrX 15718695 15718915 -146881015 - MER20 DNA MER1_type 0 219 3 243 212 18 90 chrX 15719281 15719356 -146880574 - MIR SINE MIR -64 144 82 2222 92 0 18 chrX 15722720 15723002 -146876928 + AluSx SINE Alu 1 277 -35 231 36 0 0 chrX 15723006 15723034 -146876896 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2209 135 3 0 chrX 15723424 15723735 -146876195 - AluSx SINE Alu 0 312 1 180 163 0 0 chrX 15723745 15723788 -146876142 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 285 276 0 0 chrX 15723790 15723848 -146876082 - L2 LINE L2 -76 3237 3180 327 313 0 10 chrX 15724506 15724602 -146875328 - MIR SINE MIR -86 176 82 1912 115 194 22 chrX 15726148 15726513 -146873417 - MSTA LTR MaLR 0 428 1 225 232 11 105 chrX 15726605 15726700 -146873230 + L2 LINE L2 2956 3041 -231 200 227 23 0 chrX 15726830 15726874 -146873056 + L2 LINE L2 3265 3309 -4 334 266 8 70 chrX 15726949 15727077 -146872853 - MIR3 SINE MIR -3 205 86 1557 60 74 5 chrX 15727459 15727674 -146872256 - MER30 DNA MER1_type 0 230 1 616 216 148 0 chrX 15727682 15727844 -146872086 + MER5A DNA MER1_type 4 189 0 470 227 234 0 chrX 15727850 15727991 -146871939 - MER5B DNA MER1_type 0 178 5 1820 169 3 13 chrX 15729247 15729548 -146870382 - AluJb SINE Alu -14 298 1 374 183 28 0 chrX 15729548 15729619 -146870311 - MIR SINE MIR -55 153 81 205 295 0 0 chrX 15729959 15730020 -146869910 + MIR SINE MIR 87 147 -61 233 109 87 22 chrX 15730312 15730358 -146869572 - L2 LINE L2 0 3313 3265 934 256 32 16 chrX 15731272 15731518 -146868412 + MIR SINE MIR 13 262 0 405 326 0 14 chrX 15731520 15731664 -146868266 + (CAT)n Simple_repeat Simple_repeat 2 143 0 1627 229 99 39 chrX 15733485 15733948 -146865982 - LTR16C LTR ERVL 0 491 1 270 0 0 0 chrX 15734411 15734441 -146865489 + (TAA)n Simple_repeat Simple_repeat 1 30 0 390 129 0 0 chrX 15734778 15734840 -146865090 + (CA)n Simple_repeat Simple_repeat 1 62 0 231 288 98 33 chrX 15734982 15735135 -146864795 - L2 LINE L2 -240 3032 2870 589 89 0 0 chrX 15735196 15735275 -146864655 + MADE1 DNA Mariner 1 79 -1 219 69 0 0 chrX 15735461 15735490 -146864440 + (TCC)n Simple_repeat Simple_repeat 3 31 0 * 295 83 33 33 chrX 15735483 15735543 -146864387 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 180 330 90 0 chrX 15735589 15735689 -146864241 - MIR SINE MIR -1 261 153 1331 225 74 39 chrX 15736217 15736652 -146863278 + MLT1J2 LTR MaLR 1 450 0 237 325 25 0 chrX 15737554 15737634 -146862296 - MIR SINE MIR -67 195 114 2105 251 76 16 chrX 15738754 15739451 -146860479 + L1ME2 LINE L1 5426 6164 0 491 246 49 8 chrX 15740102 15740224 -146859706 + MIR SINE MIR 36 162 -100 233 266 25 63 chrX 15740267 15740346 -146859584 - L3 LINE CR1 -8 1569 1494 1024 153 0 0 chrX 15740390 15740540 -146859390 - FRAM SINE Alu -16 150 1 22 56 0 0 chrX 15740674 15740710 -146859220 + AT_rich Low_complexity Low_complexity 1 36 0 380 263 106 56 chrX 15740825 15741004 -146858926 - L2 LINE L2 -167 3146 2959 219 36 0 0 chrX 15741016 15741044 -146858886 + (TG)n Simple_repeat Simple_repeat 2 29 0 189 94 0 0 chrX 15741045 15741077 -146858853 + (GA)n Simple_repeat Simple_repeat 2 33 0 427 262 75 0 chrX 15741179 15741286 -146858644 - MIR3 SINE MIR -50 158 44 925 279 0 5 chrX 15742563 15742767 -146857163 + MIR SINE MIR 60 262 0 269 143 0 0 chrX 15743162 15743204 -146856726 + 5S rRNA rRNA 1 42 -79 536 179 8 24 chrX 15743207 15743330 -146856600 + MER5B DNA MER1_type 54 174 -4 276 200 0 0 chrX 15743523 15743583 -146856347 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 364 192 50 20 chrX 15745379 15745478 -146854452 + L2 LINE L2 1891 1992 -1322 549 269 236 44 chrX 15745478 15745980 -146853950 + L2 LINE L2 2695 3301 -12 270 143 0 0 chrX 15745981 15746030 -146853900 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1790 123 112 37 chrX 15746112 15746461 -146853469 + THE1C LTR MaLR 1 375 0 605 234 110 55 chrX 15746919 15747137 -146852793 - MIR SINE MIR -21 241 12 940 204 0 52 chrX 15747423 15747654 -146852276 + MER20 DNA MER1_type 1 219 0 198 0 0 0 chrX 15748754 15748776 -146851154 + (A)n Simple_repeat Simple_repeat 1 22 0 252 351 29 17 chrX 15748825 15748999 -146850931 - MER5B DNA MER1_type -1 177 2 215 250 54 0 chrX 15749680 15749736 -146850194 + L2 LINE L2 3251 3309 -4 182 62 31 0 chrX 15749960 15749992 -146849938 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 235 343 10 20 chrX 15751544 15751643 -146848287 + L2 LINE L2 3170 3267 -5 625 163 0 0 chrX 15751679 15751777 -146848153 + MER81 DNA DNA 1 98 -16 1618 194 69 50 chrX 15752514 15752716 -146847214 + L1ME3 LINE L1 5718 5915 -247 2158 128 0 0 chrX 15752716 15753013 -146846917 + AluSx SINE Alu 1 297 -15 1618 194 69 50 chrX 15753013 15753247 -146846683 + L1ME3 LINE L1 5915 6162 0 2013 140 39 14 chrX 15755720 15756077 -146843853 - MER47A DNA MER2_type 0 366 1 967 320 73 5 chrX 15756263 15756644 -146843286 - LTR16C LTR ERVL -6 485 79 2252 187 24 38 chrX 15757323 15757826 -146842104 + L1ME3 LINE L1 5665 6160 -2 347 0 0 23 chrX 15758117 15758161 -146841769 + (CA)n Simple_repeat Simple_repeat 2 44 0 224 231 15 52 chrX 15758258 15758392 -146841538 + (CA)n Simple_repeat Simple_repeat 2 130 0 198 0 0 0 chrX 15758508 15758530 -146841400 + (CAT)n Simple_repeat Simple_repeat 3 24 0 274 299 46 14 chrX 15759163 15759380 -146840550 + L1ME4a LINE L1 5672 5779 -342 254 291 36 18 chrX 15759775 15759885 -146840045 - L2 LINE L2 -1 3271 3160 1104 248 68 40 chrX 15760015 15760442 -146839488 - MLT1J1 LTR MaLR -4 442 4 21 0 0 0 chrX 15760557 15760578 -146839352 + AT_rich Low_complexity Low_complexity 1 21 0 247 293 179 21 chrX 15761096 15761236 -146838694 - L2 LINE L2 0 3272 3111 187 317 125 8 chrX 15761554 15761674 -146838256 - MIR SINE MIR -98 164 31 512 250 40 7 chrX 15762142 15762294 -146837636 + L1ME4a LINE L1 5964 6120 -1 618 227 92 5 chrX 15764191 15764376 -146835554 + L1ME3A LINE L1 5946 6146 -24 501 244 0 42 chrX 15765724 15765843 -146834087 - MER81 DNA DNA 0 114 1 2447 123 22 6 chrX 15766287 15766645 -146833285 + THE1B LTR MaLR 1 364 0 221 296 125 48 chrX 15766691 15767002 -146832928 + L2 LINE L2 2542 2876 -438 455 156 78 0 chrX 15768783 15768860 -146831070 - MER3 DNA MER1_type -126 83 1 664 275 0 25 chrX 15768864 15769064 -146830866 + MIR SINE MIR 56 250 -12 185 163 47 0 chrX 15769353 15769396 -146830534 + T-rich Low_complexity Low_complexity 5 49 0 855 228 107 0 chrX 15772907 15773104 -146826826 + MER20 DNA MER1_type 2 219 0 1265 199 70 0 chrX 15775182 15775484 -146824446 - MER33 DNA MER1_type 0 324 2 300 125 0 0 chrX 15775492 15775532 -146824398 - MER3 DNA MER1_type -169 40 1 2318 158 0 3 chrX 15775731 15776093 -146823837 + MLT1A1 LTR MaLR 5 365 0 204 163 0 0 chrX 15776315 15776358 -146823572 + (TG)n Simple_repeat Simple_repeat 2 44 0 413 242 30 0 chrX 15776970 15777069 -146822861 + MIR SINE MIR 87 188 -74 329 241 36 0 chrX 15777566 15777649 -146822281 - MIR SINE MIR -74 188 103 243 247 225 0 chrX 15777742 15777831 -146822099 + MIR SINE MIR 106 214 -48 91 90 0 0 chrX 15780255 15780500 -146819430 + GC_rich Low_complexity Low_complexity 1 245 0 23 78 0 0 chrX 15780518 15780569 -146819361 + GC_rich Low_complexity Low_complexity 1 51 0 249 246 16 0 chrX 15780671 15780732 -146819198 + (CCG)n Simple_repeat Simple_repeat 1 62 0 207 173 0 0 chrX 15780828 15780880 -146819050 + G-rich Low_complexity Low_complexity 3 54 0 249 301 0 0 chrX 15781278 15781351 -146818579 - L2 LINE L2 0 3272 3200 1460 154 75 0 chrX 15781780 15782033 -146817897 + ORSL DNA AcHobo 4 275 0 271 283 72 133 chrX 15783070 15783416 -146816514 - L2 LINE L2 -1 3271 2947 337 304 149 36 chrX 15783496 15783911 -146816019 - L2 LINE L2 -481 2833 2372 866 278 208 5 chrX 15783930 15784330 -146815600 - LTR16C LTR ERVL -10 481 1 292 349 45 0 chrX 15784331 15784463 -146815467 - L2 LINE L2 -953 2361 2224 498 264 16 0 chrX 15785691 15785816 -146814114 + MER94 DNA DNA 4 130 -4 360 324 27 27 chrX 15785863 15786048 -146813882 + MLT1L LTR MaLR 431 615 0 351 266 0 0 chrX 15787093 15787217 -146812713 + (CA)n Simple_repeat Simple_repeat 2 125 0 22 0 0 0 chrX 15788704 15788726 -146811204 + AT_rich Low_complexity Low_complexity 1 22 0 358 309 37 56 chrX 15788863 15789187 -146810743 - L1ME4a LINE L1 -202 5919 5602 6358 155 7 28 chrX 15789823 15791052 -146808878 - L1MD2 LINE L1 0 6619 5417 8390 231 47 19 chrX 15791063 15793630 -146806300 - L1MD2 LINE L1 -1199 5207 2713 1901 140 0 14 chrX 15793630 15793957 -146805973 - AluSx SINE Alu 0 323 1 8390 231 47 19 chrX 15793957 15796318 -146803612 - L1MD2 LINE L1 -3693 2713 11 692 219 12 6 chrX 15796318 15796482 -146803448 + MER97a DNA MER1_type? 728 892 -2 296 213 38 25 chrX 15799099 15799179 -146800751 + Charlie7 DNA MER1_type 1 81 -2531 189 0 0 0 chrX 15799183 15799204 -146800726 + (TAGA)n Simple_repeat Simple_repeat 1 21 0 1558 236 62 24 chrX 15799206 15799485 -146800445 + Charlie7 DNA MER1_type 126 432 -2180 2357 38 52 7 chrX 15799485 15799774 -146800156 + AluY SINE Alu 1 302 -9 1558 236 62 24 chrX 15799774 15799961 -146799969 + Charlie7 DNA MER1_type 432 610 -2002 1138 264 42 27 chrX 15799971 15800202 -146799728 - LTR16C LTR ERVL 0 491 252 2672 107 25 3 chrX 15800202 15800558 -146799372 - THE1B LTR MaLR 0 364 1 1138 264 42 27 chrX 15800558 15800660 -146799270 - LTR16C LTR ERVL -239 252 153 771 74 0 0 chrX 15800725 15800833 -146799097 - LTR9B LTR ERV1 -86 558 451 286 244 22 11 chrX 15800977 15801067 -146798863 + Charlie7 DNA MER1_type 634 724 -1888 * 633 205 29 44 chrX 15801050 15801255 -146798675 + Charlie7 DNA MER1_type 2410 2611 -1 1747 192 3 0 chrX 15801430 15801727 -146798203 - AluJo SINE Alu -14 298 1 501 232 16 20 chrX 15802451 15802702 -146797228 + GA-rich Low_complexity Low_complexity 1 250 0 181 159 45 0 chrX 15802818 15802862 -146797068 - L2 LINE L2 -212 3060 3015 885 167 13 0 chrX 15802875 15803025 -146796905 - MER5A DNA MER1_type -34 155 4 354 98 0 0 chrX 15803868 15803919 -146796011 + (CA)n Simple_repeat Simple_repeat 1 51 0 548 250 24 62 chrX 15804658 15804866 -146795064 + MIR SINE MIR 63 262 0 2227 135 0 0 chrX 15804960 15805272 -146794658 + AluSx SINE Alu 1 312 0 10904 203 82 21 chrX 15805969 15809430 -146790500 + L1MD1 LINE L1 15 3683 -2857 2108 104 23 10 chrX 15809430 15809737 -146790193 + AluSx SINE Alu 1 311 -1 6262 189 48 30 chrX 15809737 15810577 -146789353 + L1MD1 LINE L1 3965 4789 -1847 2173 120 3 0 chrX 15810577 15810869 -146789061 + AluSx SINE Alu 1 293 -19 6262 189 48 30 chrX 15810869 15812649 -146787281 + L1MD1 LINE L1 4789 6633 -3 1871 269 55 3 chrX 15812733 15813302 -146786628 - L2 LINE L2 -704 2610 2013 195 42 0 0 chrX 15813336 15813360 -146786570 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 279 333 20 48 chrX 15813362 15813509 -146786421 + L2 LINE L2 2189 2331 -983 829 207 54 34 chrX 15813509 15813751 -146786179 - MLT1F1 LTR MaLR 0 567 313 508 200 20 10 chrX 15815025 15815125 -146784805 + LTR67 LTR ERVL 70 170 -387 231 224 0 53 chrX 15815067 15815143 -146784787 + MLT1J LTR MaLR 110 181 -330 * 3316 263 93 16 chrX 15815143 15816489 -146783441 - L2 LINE L2 -12 3301 1849 1019 213 80 0 chrX 15816743 15817006 -146782924 + L2 LINE L2 1297 1580 -1734 481 236 9 0 chrX 15817017 15817123 -146782807 - MER45A DNA AcHobo -26 152 46 251 239 113 0 chrX 15819779 15819850 -146780080 - MER45A DNA AcHobo -97 81 3 673 312 75 13 chrX 15819852 15820160 -146779770 + L2 LINE L2 1572 1898 -1416 1310 161 0 22 chrX 15821141 15821500 -146778430 + AluJb SINE Alu 82 312 0 1605 243 45 56 chrX 15821501 15822015 -146777915 + L1MC4a LINE L1 5322 5829 -1979 1198 181 5 14 chrX 15822469 15822684 -146777246 - MER20 DNA MER1_type 0 219 7 197 275 14 14 chrX 15822689 15822758 -146777172 + MER5B DNA MER1_type 6 74 -104 515 260 50 64 chrX 15822915 15823134 -146776796 + MER20B DNA MER1_type 1 216 -3 2262 186 48 30 chrX 15823289 15823826 -146776104 - MER69B DNA AcHobo -19 1207 661 1594 204 101 21 chrX 15823830 15824092 -146775838 - MLT1C LTR MaLR 0 467 157 2659 104 23 0 chrX 15824092 15824446 -146775484 - THE1B LTR MaLR -2 362 1 1594 204 101 21 chrX 15824446 15824609 -146775321 - MLT1C LTR MaLR -310 157 8 2175 253 24 33 chrX 15824629 15824749 -146775181 - MER69B DNA AcHobo -98 79 457 2837 129 39 0 chrX 15824749 15825159 -146774771 + MSTC LTR MaLR 1 426 -2 2175 253 24 33 chrX 15825159 15825613 -146774317 - MER69B DNA AcHobo 281 458 2 346 299 198 5 chrX 15825628 15825825 -146774105 + L3 LINE CR1 374 608 -969 388 265 30 66 chrX 15825826 15825992 -146773938 + L2 LINE L2 2854 3013 -300 498 262 10 0 chrX 15826132 15826235 -146773695 - MER81 DNA DNA -3 111 8 1239 222 45 62 chrX 15826241 15826593 -146773337 + MLT1J1 LTR MaLR 101 446 0 762 273 24 57 chrX 15826593 15826833 -146773097 + L2 LINE L2 3027 3257 -56 1495 134 0 0 chrX 15826833 15827042 -146772888 + MER3 DNA MER1_type 1 209 0 762 273 24 57 chrX 15827042 15827098 -146772832 + L2 LINE L2 3257 3313 0 6852 112 8 5 chrX 15827314 15830541 -146769389 - L1PA11 LINE L1 -4 6170 2857 438 243 5 3 chrX 15830784 15830905 -146769025 + MLT1J1 LTR MaLR 1 121 -325 1147 288 65 83 chrX 15830913 15831240 -146768690 - L1MEd LINE L1 -1027 1463 1132 450 0 0 0 chrX 15831240 15831290 -146768640 + (TC)n Simple_repeat Simple_repeat 1 50 0 1147 288 65 83 chrX 15831290 15832305 -146767625 - L1MEd LINE L1 -1358 1132 47 522 328 61 0 chrX 15833912 15834092 -146765838 + LTR16C LTR ERVL 3 193 -298 * 788 253 5 0 chrX 15834066 15834252 -146765678 + LTR16C LTR ERVL 305 491 0 462 229 130 0 chrX 15834765 15834896 -146765034 - MIR SINE MIR -15 247 100 617 195 0 16 chrX 15835870 15835993 -146763937 - L1ME3A LINE L1 -6 6164 6044 189 339 0 0 chrX 15836104 15836160 -146763770 - MIR SINE MIR -81 127 72 225 303 20 20 chrX 15836671 15836770 -146763160 + MLT1I LTR MaLR 107 205 -204 310 198 100 69 chrX 15836796 15836927 -146763003 + MLT1J2 LTR MaLR 279 408 -38 1740 175 0 7 chrX 15836992 15837277 -146762653 - AluJo SINE Alu -23 289 7 881 284 25 0 chrX 15837859 15838095 -146761835 + MIR SINE MIR 20 261 -1 850 160 7 0 chrX 15838449 15838599 -146761331 + L1MC3 LINE L1 6939 7089 -696 362 229 32 21 chrX 15838603 15838696 -146761234 + MLT1F1 LTR MaLR 50 154 -395 2908 156 88 7 chrX 15838697 15839241 -146760689 + L1MC3 LINE L1 7189 7776 -9 3234 170 68 38 chrX 15839244 15839872 -146760058 + MER82 DNA MER2_type 7 653 0 2357 84 3 16 chrX 15840023 15840332 -146759598 - AluY SINE Alu -6 305 1 441 0 0 0 chrX 15840372 15840421 -146759509 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 2149 88 0 66 chrX 15840423 15840728 -146759202 - AluSg SINE Alu -25 285 1 1816 136 32 6 chrX 15840754 15841070 -146758860 + MER33 DNA MER1_type 1 324 0 482 264 107 13 chrX 15841139 15841298 -146758632 - MIR3 SINE MIR -32 176 3 957 123 41 12 chrX 15841428 15841599 -146758331 + MER53 DNA DNA 2 177 -12 556 154 94 17 chrX 15841595 15841712 -146758218 - MER53 DNA DNA -63 126 1 * 975 96 7 0 chrX 15842275 15842410 -146757520 + MER97b DNA MER1_type? 44 179 -874 239 289 74 66 chrX 15842669 15842907 -146757023 + MIR SINE MIR 3 241 -21 1101 308 50 17 chrX 15842935 15843400 -146756530 - MLT1J LTR MaLR -31 480 1 494 277 23 15 chrX 15844420 15844550 -146755380 - MIR3 SINE MIR -28 180 50 309 335 158 28 chrX 15845613 15846260 -146753670 + L2 LINE L2 1769 2499 -815 610 238 99 79 chrX 15846393 15846544 -146753386 - L1ME4a LINE L1 -112 6009 5862 498 274 26 32 chrX 15846544 15846734 -146753196 - MER5A DNA MER1_type 0 189 1 610 238 99 79 chrX 15846734 15846986 -146752944 - L1ME4a LINE L1 -259 5862 5598 393 230 22 28 chrX 15846996 15847045 -146752885 + (TTATA)n Simple_repeat Simple_repeat 1 49 -128 1851 157 3 20 chrX 15847045 15847336 -146752594 + AluJb SINE Alu 1 288 -24 200 57 0 29 chrX 15847336 15847371 -146752559 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 393 230 22 28 chrX 15847378 15847506 -146752424 + (TTATA)n Simple_repeat Simple_repeat 49 177 0 28 0 0 0 chrX 15847512 15847540 -146752390 + AT_rich Low_complexity Low_complexity 1 28 0 402 329 79 12 chrX 15847554 15847794 -146752136 - L3 LINE CR1 -730 847 592 738 271 104 36 chrX 15848105 15848470 -146751460 - MLT1H LTR MaLR -131 418 29 298 269 227 0 chrX 15849513 15849654 -146750276 - MER91A DNA MER1_type -6 190 18 807 249 31 35 chrX 15849830 15850059 -146749871 - MIR SINE MIR 0 262 35 246 116 0 0 chrX 15850151 15850194 -146749736 + (CA)n Simple_repeat Simple_repeat 1 43 0 650 191 9 17 chrX 15850329 15850444 -146749486 - MER81 DNA DNA 0 114 1 197 121 0 0 chrX 15850525 15850558 -146749372 - L2 LINE L2 -2 3311 3279 764 255 33 45 chrX 15850688 15850931 -146748999 - MIR SINE MIR -20 242 3 763 223 17 23 chrX 15851029 15851204 -146748726 - MER5B DNA MER1_type 0 178 5 397 242 185 32 chrX 15851257 15851414 -146748516 - MER5A DNA MER1_type 0 189 9 431 169 52 0 chrX 15851431 15851508 -146748422 + MER5A DNA MER1_type 11 91 -98 728 179 205 26 chrX 15851926 15852116 -146747814 - MIR SINE MIR -10 252 29 2133 197 49 14 chrX 15852185 15852631 -146747299 - MLT1C LTR MaLR 0 467 6 1043 166 0 18 chrX 15852935 15853104 -146746826 - FRAM SINE Alu -13 163 1 1848 166 3 46 chrX 15854854 15855179 -146744751 + AluJb SINE Alu 1 311 -1 364 211 14 0 chrX 15855205 15855276 -146744654 - Charlie2 DNA MER1_type -4 2858 2787 642 208 122 35 chrX 15855278 15855310 -146744620 - L1ME2 LINE L1 -7 6157 6129 6218 121 13 8 chrX 15855310 15857074 -146742856 - L1PA15 LINE L1 -7 6158 4389 642 208 122 35 chrX 15857074 15857238 -146742692 - L1ME2 LINE L1 -35 6129 5944 311 311 145 26 chrX 15857723 15857916 -146742014 + MIR SINE MIR 8 223 -39 959 188 46 5 chrX 15858838 15859035 -146740895 - MLT1J2 LTR MaLR -203 247 43 387 313 114 40 chrX 15859119 15859331 -146740599 - L2 LINE L2 -183 3089 2894 2536 170 21 16 chrX 15859331 15859761 -146740169 + MSTB1 LTR MaLR 1 432 0 387 313 114 40 chrX 15859761 15860107 -146739823 - L2 LINE L2 -378 2894 2454 501 258 75 0 chrX 15860128 15860248 -146739682 - L2 LINE L2 -1 3312 3184 464 280 0 8 chrX 15860313 15860445 -146739485 - L2 LINE L2 -968 2346 2216 921 261 111 65 chrX 15860445 15860693 -146739237 - MLT1K LTR MaLR -20 568 333 1900 167 3 0 chrX 15860693 15860987 -146738943 + AluJo SINE Alu 1 295 -17 921 261 111 65 chrX 15860987 15861002 -146738928 - MLT1K LTR MaLR -255 333 320 189 0 0 0 chrX 15861002 15861023 -146738907 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 921 261 111 65 chrX 15861023 15861191 -146738739 - MLT1K LTR MaLR -268 320 116 430 310 66 29 chrX 15861293 15861535 -146738395 - L2 LINE L2 -1124 2190 1940 1764 138 0 66 chrX 15861844 15862149 -146737781 + AluSx SINE Alu 1 285 -27 306 106 0 0 chrX 15862149 15862196 -146737734 + (GGA)n Simple_repeat Simple_repeat 1 47 0 938 233 116 13 chrX 15862478 15862710 -146737220 - MIR SINE MIR 0 262 7 715 216 156 37 chrX 15863223 15863492 -146736438 - L1MC5 LINE L1 -53 7908 7608 491 255 27 16 chrX 15863585 15863769 -146736161 - L1MC5 LINE L1 -35 7926 7741 455 223 11 0 chrX 15864663 15864757 -146735173 + L1ME3 LINE L1 5542 5636 -534 377 218 82 0 chrX 15864760 15864870 -146735060 + L1ME3 LINE L1 5956 6074 -88 2313 47 4 7 chrX 15865177 15865454 -146734476 - AluY SINE Alu -1 310 35 1091 261 112 24 chrX 15867574 15867957 -146731973 + LTR16C LTR ERVL 75 491 0 629 243 80 26 chrX 15867979 15868205 -146731725 + MIR SINE MIR 25 262 0 389 189 33 22 chrX 15868271 15868361 -146731569 - L1MD1 LINE L1 -10 6232 6142 342 259 12 0 chrX 15868364 15868449 -146731481 - L1MD3 LINE L1 -112 7883 7798 185 292 10 31 chrX 15870038 15870134 -146729796 + L2 LINE L2 3159 3252 -61 281 26 0 26 chrX 15870206 15870245 -146729685 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2827 104 0 3 chrX 15870319 15870684 -146729246 - THE1B LTR MaLR 0 364 1 1136 291 76 8 chrX 15870782 15871199 -146728731 + LTR16A LTR ERVL 1 454 -3 425 233 125 25 chrX 15871222 15871342 -146728588 + L2 LINE L2 3182 3313 0 306 285 73 32 chrX 15871384 15871507 -146728423 - MIR SINE MIR -120 142 15 779 305 95 29 chrX 15871892 15872377 -146727553 - LTR33 LTR ERVL -4 517 1 455 253 37 58 chrX 15872474 15872659 -146727271 - MIR SINE MIR -49 159 32 465 124 237 0 chrX 15872952 15873049 -146726881 + MER3 DNA MER1_type 49 168 -41 269 235 0 0 chrX 15873083 15873134 -146726796 + MLT1J LTR MaLR 75 125 -442 2589 185 51 2 chrX 15873137 15873650 -146726280 + L1MC3 LINE L1 7195 7732 -53 5665 112 12 12 chrX 15873650 15874475 -146725455 + L1MA4A LINE L1 5478 6302 -1 349 121 52 0 chrX 15874485 15874543 -146725387 + Charlie5 DNA MER1_type 2328 2388 -224 423 0 0 0 chrX 15875390 15875437 -146724493 + (CA)n Simple_repeat Simple_repeat 1 47 0 752 283 99 78 chrX 15875614 15876008 -146723922 - L1MEd LINE L1 -844 1646 1262 3349 116 37 8 chrX 15876008 15876516 -146723414 - L1MC1 LINE L1 0 6333 5811 752 283 99 78 chrX 15876516 15876623 -146723307 - L1MEd LINE L1 -1228 1262 1159 414 0 0 0 chrX 15876623 15876669 -146723261 + (TG)n Simple_repeat Simple_repeat 1 46 0 752 283 99 78 chrX 15876669 15876808 -146723122 - L1MEd LINE L1 -1331 1159 1748 1230 213 5 9 chrX 15876808 15877029 -146722901 + MER58A DNA MER1_type 1 220 -4 752 283 99 78 chrX 15877029 15877784 -146722146 - L1MEd LINE L1 -741 1749 1012 226 278 40 35 chrX 15877881 15878054 -146721876 - L1MEd LINE L1 -5215 904 731 468 0 0 0 chrX 15878554 15878606 -146721324 + (CA)n Simple_repeat Simple_repeat 2 53 0 283 258 136 49 chrX 15879699 15880045 -146719885 - L1MC4 LINE L1 -65 7977 7469 346 216 98 29 chrX 15880046 15880148 -146719782 - MIR SINE MIR -89 173 65 456 173 13 0 chrX 15880307 15880382 -146719548 + MER3 DNA MER1_type 10 85 -124 232 294 71 48 chrX 15880544 15880670 -146719260 + LTR67 LTR ERVL 428 556 -1 1241 259 58 14 chrX 15880764 15881123 -146718807 + MLT1J LTR MaLR 128 502 -9 1687 285 111 21 chrX 15881355 15881970 -146717960 + MER115 DNA AcHobo 23 692 -1 408 281 47 47 chrX 15882211 15882382 -146717548 - MER5B DNA MER1_type -7 171 1 1877 194 84 16 chrX 15882706 15883077 -146716853 - MSTD LTR MaLR 0 396 1 192 286 48 16 chrX 15883077 15883130 -146716800 + L2 LINE L2 3256 3313 0 5682 109 4 6 chrX 15883133 15883957 -146715973 - L1PA15 LINE L1 0 6165 5341 203 224 13 118 chrX 15885388 15885464 -146714466 - MIR SINE MIR -84 124 57 579 217 134 19 chrX 15886737 15886894 -146713036 + MER5B DNA MER1_type 1 175 -3 681 221 175 0 chrX 15886905 15887059 -146712871 - MER5A DNA MER1_type 0 189 9 2074 136 0 10 chrX 15888623 15888933 -146710997 + AluJb SINE Alu 1 307 -5 209 354 24 0 chrX 15888973 15889055 -146710875 - L3 LINE CR1 -9 1568 1485 225 169 479 0 chrX 15889217 15889288 -146710642 - MER5A DNA MER1_type -78 111 7 2822 186 36 19 chrX 15889562 15890090 -146709840 - MLT1F LTR MaLR -2 540 4 582 286 118 35 chrX 15891331 15891586 -146708344 + MLT1J2 LTR MaLR 57 332 -118 2244 107 10 7 chrX 15892016 15892326 -146707604 + AluY SINE Alu 1 311 0 22 0 0 0 chrX 15892773 15892795 -146707135 + AT_rich Low_complexity Low_complexity 1 22 0 738 188 227 0 chrX 15893287 15893441 -146706489 + MER5A DNA MER1_type 1 189 0 237 296 11 11 chrX 15894038 15894126 -146705804 + CT-rich Low_complexity Low_complexity 3 90 0 238 277 73 58 chrX 15894148 15894285 -146705645 + MER5B DNA MER1_type 3 141 -37 382 223 36 45 chrX 15894169 15894281 -146705649 - MER5A DNA MER1_type -29 160 50 2215 95 3 0 chrX 15894673 15895009 -146704921 + AluSq SINE Alu 1 337 0 999 261 151 13 chrX 15895183 15895565 -146704365 + LTR16C LTR ERVL 1 435 -56 1356 199 27 15 chrX 15895565 15895827 -146704103 + Tigger7 DNA MER2_type 1 265 -468 631 131 0 20 chrX 15895830 15895929 -146704001 + Tigger7 DNA MER2_type 2490 2586 -1 354 137 0 0 chrX 15895930 15895981 -146703949 + LTR16C LTR ERVL 434 484 -7 291 311 49 24 chrX 15896470 15896634 -146703296 + L2 LINE L2 2587 2754 -560 258 336 36 29 chrX 15897006 15897143 -146702787 + L2 LINE L2 3176 3313 0 656 112 10 10 chrX 15897783 15897903 -146702027 + FLAM_C SINE Alu 32 143 0 697 300 22 9 chrX 15897990 15898213 -146701717 - MIR SINE MIR -14 248 23 539 320 34 17 chrX 15898278 15898456 -146701474 + MIR3 SINE MIR 23 203 -5 1401 231 44 33 chrX 15898782 15899142 -146700788 - MLT1G LTR MaLR 0 590 227 1014 42 6 4 chrX 15899186 15899203 -146700727 + L1P3 LINE L1 5629 5644 -510 2942 74 3 3 chrX 15899203 15899569 -146700361 - L1PA7 LINE L1 -1 6153 5788 1014 42 6 4 chrX 15899569 15899683 -146700247 + L1PA7 LINE L1 5644 5762 -392 576 306 61 15 chrX 15899685 15899881 -146700049 - MLT1G LTR MaLR -321 234 30 264 307 53 0 chrX 15899908 15899983 -146699947 + L2 LINE L2 3169 3247 -25 385 249 0 109 chrX 15900407 15900608 -146699322 + C-rich Low_complexity Low_complexity 2 180 0 251 292 28 0 chrX 15900974 15901046 -146698884 - MIR3 SINE MIR -26 182 109 595 304 91 12 chrX 15901055 15901298 -146698632 - MIR SINE MIR 0 262 1 447 281 31 31 chrX 15901620 15901780 -146698150 + MIR SINE MIR 103 262 0 304 279 0 0 chrX 15901807 15901875 -146698055 + L2 LINE L2 3204 3271 -1 180 0 0 0 chrX 15902088 15902108 -146697822 + (A)n Simple_repeat Simple_repeat 1 20 0 1634 286 44 24 chrX 15902137 15902641 -146697289 - MLT1K LTR MaLR -8 580 67 508 270 29 17 chrX 15902811 15902985 -146696945 + MER112 DNA MER1_type 1 176 -84 747 237 87 138 chrX 15903045 15903517 -146696413 - MLT1J2 LTR MaLR -2 448 1 466 258 227 15 chrX 15904344 15904542 -146695388 - MIR SINE MIR -22 240 1 259 268 39 105 chrX 15904577 15904730 -146695200 - MIR SINE MIR -30 232 90 1323 240 88 6 chrX 15904741 15905070 -146694860 - MER63 DNA MER1_type -11 1051 696 789 220 162 0 chrX 15905890 15906081 -146693849 - MIR SINE MIR -21 241 20 196 350 75 62 chrX 15906164 15906324 -146693606 + L2 LINE L2 3102 3263 -9 311 91 0 0 chrX 15906333 15906377 -146693553 - MIR SINE MIR -59 149 106 231 36 0 0 chrX 15907893 15907921 -146692009 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 580 243 85 0 chrX 15908797 15908974 -146690956 - MER117 DNA MER1_type 0 197 6 211 278 146 56 chrX 15908980 15909124 -146690806 - MIR3 SINE MIR -51 157 1 211 213 197 0 chrX 15909132 15909193 -146690737 + L2 LINE L2 3179 3251 -21 1107 192 0 19 chrX 15909198 15909406 -146690524 - AluJb SINE Alu -23 289 86 1100 186 73 0 chrX 15910028 15910232 -146689698 + MER20 DNA MER1_type 1 219 0 231 308 48 67 chrX 15910873 15910977 -146688953 + L2 LINE L2 3201 3302 -11 855 203 90 47 chrX 15910982 15911238 -146688692 + L1ME3 LINE L1 5565 5831 -331 622 261 20 0 chrX 15911302 15911455 -146688475 - MIR SINE MIR -10 252 97 735 165 38 15 chrX 15911507 15911779 -146688151 - MLT1A1 LTR MaLR 0 365 1 222 176 0 0 chrX 15912543 15912594 -146687336 + GA-rich Low_complexity Low_complexity 1 51 0 1007 244 136 38 chrX 15913118 15913671 -146686259 - L1ME4a LINE L1 -5 6116 5510 881 168 189 5 chrX 15914976 15915161 -146684769 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 15915570 15915590 -146684340 + (TAA)n Simple_repeat Simple_repeat 2 21 0 279 190 4 16 chrX 15915697 15915779 -146684151 - L1ME3 LINE L1 -211 5951 5870 2007 145 0 16 chrX 15915805 15916116 -146683814 - AluSx SINE Alu 0 312 7 1045 313 47 17 chrX 15916155 15916682 -146683248 - L1ME3 LINE L1 -321 5849 5307 839 186 13 19 chrX 15916690 15916846 -146683084 + MLT1E LTR MaLR 1 155 -438 487 300 65 24 chrX 15917074 15917414 -146682516 - L1ME3 LINE L1 -1430 4716 4363 25 0 0 0 chrX 15917553 15917578 -146682352 + AT_rich Low_complexity Low_complexity 1 25 0 479 251 39 50 chrX 15918872 15919051 -146680879 - MLT1J2 LTR MaLR -2 448 272 431 236 22 0 chrX 15919066 15919155 -146680775 + Charlie4a DNA MER1_type 2 92 -416 2480 173 26 16 chrX 15919163 15919655 -146680275 - MLT1D LTR MaLR -8 497 1 800 203 135 69 chrX 15919655 15919923 -146680007 + Charlie4a DNA MER1_type 88 387 -1574 2129 140 0 3 chrX 15919923 15920231 -146679699 - AluSx SINE Alu -5 307 1 800 203 135 69 chrX 15920231 15920322 -146679608 + Charlie4a DNA MER1_type 387 471 -37 625 222 90 14 chrX 15920489 15920633 -146679297 - MER5A DNA MER1_type -6 183 29 396 240 200 0 chrX 15921582 15921707 -146678223 + MIR SINE MIR 20 169 -93 589 209 8 30 chrX 15924234 15924368 -146675562 + L2 LINE L2 3180 3310 -3 295 267 216 0 chrX 15924919 15925035 -146674895 + MER5A DNA MER1_type 47 187 -2 200 111 28 0 chrX 15925345 15925381 -146674549 + T-rich Low_complexity Low_complexity 1 37 0 625 209 79 40 chrX 15925454 15925631 -146674299 + MER63A DNA MER1_type 27 210 0 1413 346 117 25 chrX 15925632 15926499 -146673431 - L3 LINE CR1 -411 1166 221 934 271 9 5 chrX 15926660 15926874 -146673056 + MIR SINE MIR 27 241 -21 207 375 27 9 chrX 15926925 15927037 -146672893 - L3 LINE CR1 -1417 160 47 198 314 85 34 chrX 15927326 15927444 -146672486 + MIR3 SINE MIR 45 168 -40 1461 154 14 107 chrX 15927448 15927804 -146672126 + MER33 DNA MER1_type 2 324 0 204 111 0 0 chrX 15928496 15928532 -146671398 + (TG)n Simple_repeat Simple_repeat 1 36 0 195 42 0 0 chrX 15928531 15928555 -146671375 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 2652 24 0 3 chrX 15929240 15929537 -146670393 + AluY SINE Alu 1 296 -15 193 333 61 18 chrX 15929978 15930092 -146669838 - L2 LINE L2 -13 3259 3141 360 271 17 8 chrX 15930510 15930628 -146669302 + MLT1I LTR MaLR 1 119 -290 912 294 81 67 chrX 15930640 15932009 -146667921 + ERVL LTR ERVL 3667 4979 -17 349 294 75 44 chrX 15933144 15933383 -146666547 - MLT1L LTR MaLR -195 393 139 356 186 174 0 chrX 15933386 15933472 -146666458 - L1ME3A LINE L1 -6 6164 6064 1599 193 143 78 chrX 15933514 15933990 -146665940 - Charlie4a DNA MER1_type -1 507 1 527 292 7 26 chrX 15934085 15934239 -146665691 - L2 LINE L2 0 3313 3163 1892 186 80 0 chrX 15934480 15934818 -146665112 + MLT1A1 LTR MaLR 1 365 0 277 333 14 35 chrX 15935034 15935175 -146664755 - L2 LINE L2 -2 3270 3133 180 0 0 0 chrX 15935534 15935554 -146664376 + (A)n Simple_repeat Simple_repeat 1 20 0 830 194 73 6 chrX 15935736 15935901 -146664029 + MER5B DNA MER1_type 3 178 0 1732 214 27 0 chrX 15935911 15936242 -146663688 - MER58B DNA MER1_type 0 341 2 240 269 0 0 chrX 15936771 15936823 -146663107 + GA-rich Low_complexity Low_complexity 2 53 0 311 189 0 14 chrX 15937235 15937309 -146662621 + GA-rich Low_complexity Low_complexity 1 73 0 643 231 163 0 chrX 15937417 15937577 -146662353 - MER5A DNA MER1_type 0 189 4 1358 162 97 17 chrX 15937589 15937879 -146662051 + MER33 DNA MER1_type 1 313 -11 5868 63 1 6 chrX 15937939 15938642 -146661288 + L1PA6 LINE L1 5455 6154 0 24 32 0 0 chrX 15938677 15938708 -146661222 + AT_rich Low_complexity Low_complexity 1 31 0 1876 85 33 0 chrX 15938729 15938999 -146660931 - L1MA1 LINE L1 -64 6238 5960 4715 118 16 20 chrX 15939143 15939844 -146660086 + L1PA15 LINE L1 5468 6165 0 747 275 59 8 chrX 15939968 15940204 -146659726 + MIR SINE MIR 10 257 -5 1305 255 50 13 chrX 15940330 15940707 -146659223 + L1ME3A LINE L1 5765 6155 -15 457 241 0 0 chrX 15940821 15940904 -146659026 + FRAM/FAM SINE Alu 1 83 -93 2417 74 10 0 chrX 15941161 15941458 -146658472 - AluSc SINE Alu -9 300 1 28 29 0 0 chrX 15941712 15941747 -146658183 + AT_rich Low_complexity Low_complexity 1 35 0 1981 248 22 0 chrX 15942106 15942517 -146657413 + LTR16C LTR ERVL 72 491 0 448 299 132 0 chrX 15943331 15943528 -146656402 + MLT1L LTR MaLR 339 561 -54 397 178 0 0 chrX 15943570 15943643 -146656287 - L1ME3A LINE L1 -5 6165 6093 1006 245 42 0 chrX 15943697 15943934 -146655996 + MIR SINE MIR 11 257 -5 234 335 77 26 chrX 15944451 15944606 -146655324 - MIR3 SINE MIR -9 199 37 243 0 0 0 chrX 15945154 15945181 -146654749 + (GA)n Simple_repeat Simple_repeat 1 27 0 34 0 0 0 chrX 15945445 15945479 -146654451 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chrX 15945596 15945620 -146654310 + AT_rich Low_complexity Low_complexity 1 24 0 867 258 18 5 chrX 15948026 15948243 -146651687 + MIR SINE MIR 12 231 -31 2633 130 6 3 chrX 15948374 15948736 -146651194 + THE1B LTR MaLR 2 364 0 433 233 114 52 chrX 15950097 15950128 -146649802 + MLT1C LTR MaLR 130 158 -309 2327 131 121 18 chrX 15950128 15950516 -146649414 + MSTA LTR MaLR 1 428 0 433 233 114 52 chrX 15950516 15950694 -146649236 + MLT1C LTR MaLR 158 352 -115 386 317 139 11 chrX 15950712 15950892 -146649038 - L2 LINE L2 -210 3062 2860 724 135 0 9 chrX 15950905 15951016 -146648914 + MLT1C LTR MaLR 356 465 -2 219 283 17 0 chrX 15952453 15952513 -146647417 + L2 LINE L2 3020 3080 -233 1195 165 23 23 chrX 15953118 15953336 -146646594 - MER20 DNA MER1_type 0 219 2 342 293 245 20 chrX 15953795 15953942 -146645988 + MIR3 SINE MIR 18 197 -11 269 260 31 0 chrX 15955266 15955362 -146644568 + (TA)n Simple_repeat Simple_repeat 2 100 0 1285 242 144 31 chrX 15955437 15955917 -146644013 + MLT1H1 LTR MaLR 11 544 -11 769 265 51 43 chrX 15955955 15956212 -146643718 - MIR SINE MIR 0 262 4 280 317 21 0 chrX 15956224 15956332 -146643598 - L1ME LINE L1 -343 5778 5669 327 290 37 9 chrX 15957259 15957366 -146642564 - MIR3 SINE MIR -22 186 77 278 108 0 154 chrX 15957368 15957433 -146642497 - MLT1H LTR MaLR -3 546 492 521 217 75 19 chrX 15957656 15957815 -146642115 - MLT1H LTR MaLR -272 162 2 206 296 19 0 chrX 15957820 15957874 -146642056 - MIR SINE MIR -130 78 24 539 239 63 13 chrX 15958193 15958352 -146641578 + MLT1H LTR MaLR 1 167 -382 349 309 18 18 chrX 15958426 15958536 -146641394 + MIR SINE MIR 21 130 -78 601 249 30 24 chrX 15958746 15958915 -146641015 - MIR SINE MIR -91 171 2 310 342 9 0 chrX 15958923 15959034 -146640896 + MIR SINE MIR 147 258 -4 211 294 96 64 chrX 15959139 15959330 -146640600 - MIR SINE MIR -43 219 23 1235 132 107 43 chrX 15959393 15959674 -146640256 - MER33 DNA MER1_type -5 319 21 296 290 131 28 chrX 15960703 15960848 -146639082 - MIR SINE MIR -11 251 92 808 235 25 48 chrX 15961422 15961746 -146638184 - HsTC2 DNA Tc2 -122 1776 1235 420 169 136 93 chrX 15961748 15961866 -146638064 - HsTC2 DNA Tc2 -1747 151 29 417 211 94 23 chrX 15963676 15963804 -146636126 - MLT1H LTR MaLR -3 546 410 631 276 96 48 chrX 15963856 15964128 -146635802 - MLT1H LTR MaLR -242 307 23 374 289 42 48 chrX 15964160 15964471 -146635459 - L1M4 LINE L1 -1428 4718 4410 304 315 15 46 chrX 15964757 15964887 -146635043 - MIR SINE MIR -50 212 87 531 259 53 42 chrX 15965141 15965330 -146634600 + MIR SINE MIR 20 210 -52 1873 174 0 22 chrX 15965424 15965735 -146634195 - AluJb SINE Alu -8 304 1 1784 159 0 33 chrX 15966348 15966682 -146633248 - MER33 DNA MER1_type 0 324 2 862 242 10 25 chrX 15967439 15967637 -146632293 + MER91A DNA MER1_type 1 195 -1 253 276 238 0 chrX 15967943 15968048 -146631882 + L2 LINE L2 3171 3300 -13 1045 219 60 8 chrX 15968116 15968381 -146631549 + L1MC5 LINE L1 7650 7928 -33 898 317 105 17 chrX 15968396 15968518 -146631412 - L2 LINE L2 -2 3311 3201 183 100 0 0 chrX 15968518 15968548 -146631382 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 898 317 105 17 chrX 15968548 15968913 -146631017 - L2 LINE L2 -112 3201 2782 1453 257 19 6 chrX 15968980 15969291 -146630639 + MLT1I LTR MaLR 95 409 0 255 196 19 131 chrX 15969312 15969419 -146630511 + MER103 DNA DNA 70 164 -2 2791 90 8 19 chrX 15969448 15969816 -146630114 + THE1B LTR MaLR 1 364 0 201 74 0 0 chrX 15970143 15970170 -146629760 + (TC)n Simple_repeat Simple_repeat 2 28 0 320 329 81 12 chrX 15970349 15970510 -146629420 - L3 LINE CR1 -856 721 550 6023 115 12 2 chrX 15971700 15972883 -146627047 - L1PA16 LINE L1 0 6166 4975 850 177 25 13 chrX 15972937 15973095 -146626835 + MLT1D LTR MaLR 1 160 -345 1005 226 58 11 chrX 15973109 15973370 -146626560 + L1ME3A LINE L1 5698 5970 -200 439 250 25 17 chrX 15973450 15973570 -146626360 + L1ME3A LINE L1 6006 6126 -44 2078 108 3 29 chrX 15973595 15973910 -146626020 + AluSx SINE Alu 1 307 -5 398 179 8 137 chrX 15974066 15974183 -146625747 + L1MC4a LINE L1 5505 5606 -2202 1021 116 0 0 chrX 15974183 15974312 -146625618 + AluJo SINE Alu 1 129 -173 281 169 0 0 chrX 15974312 15974371 -146625559 + (TA)n Simple_repeat Simple_repeat 1 59 0 1223 121 0 0 chrX 15974371 15974536 -146625394 + AluJo SINE Alu 133 297 -15 1361 248 114 11 chrX 15974543 15975095 -146624835 + L1MC4a LINE L1 5602 6210 -1598 2374 158 10 18 chrX 15976859 15977252 -146622678 + MLT1B LTR MaLR 1 390 0 844 238 36 60 chrX 15977325 15977606 -146622324 + MLT1H LTR MaLR 29 302 -247 1923 167 0 0 chrX 15979695 15979983 -146619947 - AluJb SINE Alu -23 289 2 24 0 0 0 chrX 15979983 15980007 -146619923 + AT_rich Low_complexity Low_complexity 1 24 0 640 176 110 0 chrX 15980007 15980143 -146619787 + MLT-int LTR MaLR 479 629 -1106 1957 187 42 23 chrX 15980154 15980582 -146619348 - L1MC3 LINE L1 -25 7760 7325 693 154 77 0 chrX 15980591 15980708 -146619222 - L1MDb LINE L1 -6275 134 9 3913 90 4 8 chrX 15980978 15981487 -146618443 + L1PA11 LINE L1 5660 6166 -8 1431 276 30 45 chrX 15981910 15982381 -146617549 + LTR16B LTR ERVL 1 464 0 1373 253 31 3 chrX 15982526 15982878 -146617052 - L1ME3A LINE L1 0 6170 5809 490 274 22 30 chrX 15983792 15983927 -146616003 - MIR SINE MIR -128 134 1 899 277 41 4 chrX 15984126 15984368 -146615562 + MIR SINE MIR 2 252 -10 382 328 11 40 chrX 15984433 15984607 -146615323 - MER5A DNA MER1_type -2 187 19 463 61 0 202 chrX 15985262 15985361 -146614569 - MADE1 DNA Mariner 0 80 2 200 183 0 17 chrX 15985828 15985888 -146614042 + GA-rich Low_complexity Low_complexity 2 60 0 2381 216 110 30 chrX 15986539 15987004 -146612926 - L1MC4a LINE L1 0 7808 7305 26416 32 0 0 chrX 15987004 15990766 -146609164 - L1PA5 LINE L1 -1 6153 2394 2381 216 110 30 chrX 15990766 15990951 -146608979 - L1MC4a LINE L1 -503 7305 7136 247 294 33 22 chrX 15992602 15992694 -146607236 - MIR SINE MIR -74 188 96 777 271 10 10 chrX 15994317 15994516 -146605414 + MIR SINE MIR 2 200 -62 459 0 0 0 chrX 15996087 15996138 -146603792 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2609 71 0 0 chrX 15996486 15996797 -146603133 + AluY SINE Alu 1 311 0 265 216 155 21 chrX 15996852 15996949 -146602981 + L2 LINE L2 3204 3313 0 509 143 0 0 chrX 15997847 15997931 -146601999 + L1MA9 LINE L1 6188 6271 -41 27 0 0 0 chrX 15998274 15998301 -146601629 + AT_rich Low_complexity Low_complexity 1 27 0 406 268 177 6 chrX 15999896 16000060 -146599870 + MIR SINE MIR 70 261 -1 281 252 43 79 chrX 16000474 16000613 -146599317 - MIR SINE MIR -56 206 73 982 234 148 36 chrX 16000652 16001036 -146598894 - MLT1J2 LTR MaLR -23 427 1 288 295 67 9 chrX 16001468 16001573 -146598357 + L2 LINE L2 3161 3271 -1 1821 208 42 9 chrX 16002251 16002680 -146597250 + L1MC4 LINE L1 7462 7904 -138 320 214 41 41 chrX 16002792 16002890 -146597040 + L1MC4 LINE L1 7942 8039 -3 1311 112 0 11 chrX 16002909 16003097 -146596833 + THE1B LTR MaLR 17 202 -162 4272 126 16 125 chrX 16003097 16004644 -146595286 + pTR5 LTR ERV1 743 2606 0 1193 105 6 6 chrX 16004644 16004806 -146595124 + THE1B LTR MaLR 203 364 0 187 377 93 19 chrX 16005898 16006113 -146593817 + L2 LINE L2 2825 3055 -217 21 0 0 0 chrX 16006534 16006555 -146593375 + AT_rich Low_complexity Low_complexity 1 21 0 1452 150 143 8 chrX 16006775 16007041 -146592889 + AluJb SINE Alu 1 302 0 3986 194 34 16 chrX 16007990 16008827 -146591103 + L1MB7 LINE L1 5333 6184 0 493 54 14 14 chrX 16009275 16009349 -146590581 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 554 208 190 32 chrX 16009368 16009589 -146590341 - MIR SINE MIR -5 257 2 889 193 50 6 chrX 16009768 16009949 -146589981 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chrX 16010241 16010265 -146589665 + AT_rich Low_complexity Low_complexity 1 24 0 374 268 107 15 chrX 16010531 16010667 -146589263 - MLT1J LTR MaLR -33 466 269 365 234 0 1 chrX 16010690 16010765 -146589165 - MLT1J LTR MaLR -253 196 83 2083 163 79 3 chrX 16010767 16011135 -146588795 + MSTD LTR MaLR 1 396 0 367 269 0 0 chrX 16011140 16011218 -146588712 - MLT1J LTR MaLR -428 83 6 5627 134 16 1 chrX 16011622 16012677 -146587253 - L1M2 LINE L1 -743 5403 4477 2182 215 26 49 chrX 16012676 16013206 -146586724 - L1M2b LINE L1 -6691 518 1 * 801 204 17 28 chrX 16013570 16013746 -146586184 - MER5B DNA MER1_type -4 174 1 390 175 50 0 chrX 16013936 16014016 -146585914 - MER5A DNA MER1_type -80 109 26 411 274 170 15 chrX 16015089 16015224 -146584706 - MER5A DNA MER1_type -3 186 31 2177 61 2 1 chrX 16015299 16015807 -146584123 - MER41A LTR ERV1 0 554 1 1502 182 61 73 chrX 16016181 16016576 -146583354 - MLT1B LTR MaLR 0 390 1 817 212 16 33 chrX 16016884 16017068 -146582862 - AluJo SINE Alu -17 295 115 295 278 8 87 chrX 16019162 16019288 -146580642 - L2 LINE L2 -21 3251 3136 1279 104 6 0 chrX 16019328 16019510 -146580420 + MER41B LTR ERV1 1 183 -452 2256 77 24 0 chrX 16019510 16019848 -146580082 + L1PA14 LINE L1 5654 6157 -4 28 50 0 17 chrX 16019848 16019875 -146580055 + AT_rich Low_complexity Low_complexity 1 27 -32 2246 93 0 0 chrX 16019875 16020154 -146579776 - AluSx SINE Alu -20 292 14 28 50 0 17 chrX 16020154 16020186 -146579744 + AT_rich Low_complexity Low_complexity 27 59 0 1069 41 0 14 chrX 16020204 16020349 -146579581 + (GAA)n Simple_repeat Simple_repeat 1 143 0 2792 157 0 2 chrX 16020355 16020807 -146579123 + MER41B LTR ERV1 185 635 0 490 130 130 0 chrX 16020811 16020911 -146579019 + MER5A DNA MER1_type 77 189 0 886 269 99 33 chrX 16021039 16021403 -146578527 - MLT1J1 LTR MaLR -13 433 46 284 316 43 8 chrX 16021507 16021624 -146578306 - MIR SINE MIR -122 140 20 2394 158 92 13 chrX 16021690 16022138 -146577792 + MLT1D LTR MaLR 21 503 -2 1387 164 0 0 chrX 16022417 16022637 -146577293 - AluJb SINE Alu -7 305 86 3192 237 48 21 chrX 16022637 16023630 -146576300 + L1MD2 LINE L1 3941 4960 -1186 268 32 0 0 chrX 16023635 16023666 -146576264 - U2 snRNA snRNA -152 36 6 43890 32 21 1 chrX 16023769 16024401 -146575529 + L1PA2 LINE L1 3 621 -5534 5258 15 0 3 chrX 16024401 16024995 -146574935 + L1PA2 LINE L1 5564 6155 0 43890 32 21 1 chrX 16024995 16030385 -146569545 + L1PA2 LINE L1 621 6146 -9 252 0 0 0 chrX 16030385 16030413 -146569517 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 207 0 0 0 chrX 16030412 16030435 -146569495 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 * 4443 206 75 16 chrX 16030413 16030650 -146569280 + L1MD2 LINE L1 5049 5271 -1088 1598 43 0 0 chrX 16030650 16030866 -146569064 + L1PA3 LINE L1 5952 6167 0 4443 206 75 16 chrX 16030866 16031666 -146568264 + L1MD2 LINE L1 5271 6168 -191 189 0 0 0 chrX 16031666 16031687 -146568243 + (CA)n Simple_repeat Simple_repeat 2 22 0 4443 206 75 16 chrX 16031687 16031891 -146568039 + L1MD2 LINE L1 6168 6359 0 260 211 101 30 chrX 16032005 16032131 -146567799 - MIR SINE MIR -62 146 19 467 189 56 11 chrX 16032451 16032541 -146567389 + Charlie2 DNA MER1_type 249 342 -2520 1810 167 89 23 chrX 16032636 16033073 -146566857 + Charlie2 DNA MER1_type 2393 2858 -4 198 355 9 28 chrX 16033616 16033723 -146566207 + L3 LINE CR1 433 537 -1040 613 300 19 24 chrX 16034298 16034508 -146565422 - MLT1H LTR MaLR -317 232 24 180 0 0 0 chrX 16034911 16034931 -146564999 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 244 152 0 22 chrX 16036911 16036957 -146562973 - L1ME4a LINE L1 0 6121 6077 21 71 0 0 chrX 16037249 16037291 -146562639 + AT_rich Low_complexity Low_complexity 1 42 0 714 218 29 11 chrX 16037341 16037515 -146562415 - L1ME LINE L1 -426 5695 5519 271 289 50 16 chrX 16037861 16037982 -146561948 + L2 LINE L2 3189 3313 0 1017 263 28 9 chrX 16038094 16038480 -146561450 + LTR16C LTR ERVL 61 483 -8 183 80 0 0 chrX 16038650 16038675 -146561255 + (TG)n Simple_repeat Simple_repeat 2 26 0 2385 95 3 0 chrX 16038734 16039038 -146560892 + AluSx SINE Alu 1 305 -7 950 261 203 15 chrX 16039337 16039805 -146560125 - LTR67 LTR ERVL 0 557 2 1256 181 45 57 chrX 16040027 16040358 -146559572 - MER33 DNA MER1_type 0 324 1 809 146 28 0 chrX 16040645 16040789 -146559141 + MER96B DNA MER1_type? 29 176 -241 313 212 47 12 chrX 16041022 16041107 -146558823 + L1ME4a LINE L1 4571 4658 -1488 198 220 0 0 chrX 16041722 16041781 -146558149 + (CA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chrX 16043061 16043089 -146556841 + AT_rich Low_complexity Low_complexity 1 28 0 444 254 41 25 chrX 16044073 16044257 -146555673 + MLT1I LTR MaLR 263 409 0 3845 177 29 41 chrX 16045357 16045917 -146554013 + L1MCb LINE L1 566 1131 -5433 2217 118 3 0 chrX 16045917 16046222 -146553708 + AluSx SINE Alu 1 306 -6 2131 97 49 0 chrX 16046228 16046516 -146553414 + AluSp SINE Alu 1 302 -11 3845 177 29 41 chrX 16046516 16047237 -146552693 + L1MCb LINE L1 1136 1941 -4623 693 276 115 55 chrX 16047587 16047884 -146552046 + L1ME4a LINE L1 5317 5595 -526 1816 153 27 3 chrX 16047884 16048185 -146551745 + AluJo SINE Alu 5 312 0 693 276 115 55 chrX 16048185 16048470 -146551460 + L1ME4a LINE L1 5595 5934 -187 368 218 65 24 chrX 16048490 16048614 -146551316 + L1ME4a LINE L1 5992 6120 -1 838 145 0 8 chrX 16048864 16048988 -146550942 - FLAM_A SINE Alu -9 124 2 2062 188 90 22 chrX 16049215 16049714 -146550216 - MLT1F LTR MaLR 0 555 10 5255 138 59 3 chrX 16049982 16051347 -146548583 + L1MA7 LINE L1 4848 6291 0 1784 183 0 10 chrX 16051351 16051663 -146548267 + AluJo SINE Alu 1 309 -3 1549 164 27 38 chrX 16052308 16052600 -146547330 + AluJb SINE Alu 1 289 -23 677 204 11 175 chrX 16052984 16053258 -146546672 - MIR SINE MIR -32 230 2 1021 233 35 22 chrX 16054126 16054354 -146545576 + MIR SINE MIR 10 240 -22 621 265 209 13 chrX 16054601 16055032 -146544898 - LTR50 LTR ERVL -1 794 193 245 325 44 75 chrX 16055033 16055285 -146544645 + L2 LINE L2 2664 2907 -407 1256 264 18 28 chrX 16055570 16055967 -146543963 + LTR16C LTR ERVL 98 490 -1 250 388 54 14 chrX 16055993 16056140 -146543790 + L2 LINE L2 3115 3267 -5 2002 131 0 32 chrX 16056858 16057172 -146542758 + AluJb SINE Alu 1 304 -8 418 244 68 91 chrX 16057294 16057470 -146542460 - MIR SINE MIR -5 257 86 709 285 18 36 chrX 16057609 16057830 -146542100 + MIR SINE MIR 12 228 -34 561 257 0 46 chrX 16057844 16057996 -146541934 - MIR SINE MIR -4 258 114 5906 213 47 27 chrX 16058000 16058874 -146541056 + L1MEc LINE L1 1333 2188 -4027 591 169 66 0 chrX 16058874 16059010 -146540920 + L1MA8 LINE L1 6146 6290 -1 5906 213 47 27 chrX 16059010 16060767 -146539163 + L1MEc LINE L1 2188 3920 -2295 2053 176 15 27 chrX 16060767 16061167 -146538763 - MLT2B2 LTR ERVL -122 393 12 734 42 0 0 chrX 16061167 16061262 -146538668 + L1PA7 LINE L1 6059 6153 -1 2053 176 15 27 chrX 16061262 16061274 -146538656 - MLT2B2 LTR ERVL -503 12 1 4616 133 13 3 chrX 16061276 16062058 -146537872 + L1MC1 LINE L1 5254 6043 -290 4423 106 76 1 chrX 16062059 16062760 -146537170 + Tigger1 DNA MER2_type 1 753 -1665 1691 127 41 14 chrX 16062739 16063031 -146536899 + Tigger1 DNA MER2_type 2119 2418 0 * 1610 153 21 11 chrX 16063031 16063313 -146536617 + L1MC1 LINE L1 6043 6327 -6 195 257 229 9 chrX 16063404 16063509 -146536421 - MIR SINE MIR -133 129 2 246 282 59 42 chrX 16063525 16063668 -146536262 - MIR3 SINE MIR -64 144 14 189 0 0 0 chrX 16064032 16064053 -146535877 + (A)n Simple_repeat Simple_repeat 1 21 0 411 276 0 104 chrX 16065471 16065591 -146534339 - MIR SINE MIR -41 221 127 1279 258 82 26 chrX 16065591 16066017 -146533913 + MLT1J2 LTR MaLR 1 450 0 411 276 0 104 chrX 16066017 16066088 -146533842 - MIR SINE MIR -135 127 50 266 312 44 34 chrX 16067239 16067444 -146532486 - L1ME LINE L1 -403 5718 5512 296 197 0 61 chrX 16067540 16067606 -146532324 + L2 LINE L2 3251 3312 -1 978 266 101 31 chrX 16068703 16069127 -146530803 + LTR16A1 LTR ERVL 1 454 -3 1862 254 97 45 chrX 16069171 16070148 -146529782 - L1ME LINE L1 -1215 4931 3890 2339 99 0 0 chrX 16070148 16070440 -146529490 - AluSx SINE Alu -18 294 3 1862 254 97 45 chrX 16070440 16070556 -146529374 - L1ME LINE L1 -2256 3890 3781 323 247 11 11 chrX 16070559 16070652 -146529278 - L1ME LINE L1 -458 5704 5612 416 372 55 7 chrX 16070654 16070928 -146529002 - L2 LINE L2 -928 2386 2100 277 109 27 45 chrX 16071084 16071194 -146528736 + (TTTG)n Simple_repeat Simple_repeat 3 110 0 2098 111 71 31 chrX 16071751 16072101 -146527829 + THE1B LTR MaLR 1 364 0 472 316 94 23 chrX 16072418 16072684 -146527246 + L1M4 LINE L1 2193 2477 -3669 1854 161 0 14 chrX 16072684 16072999 -146526931 + AluJb SINE Alu 3 313 0 201 39 0 0 chrX 16073098 16073124 -146526806 + (TA)n Simple_repeat Simple_repeat 1 26 0 302 282 0 35 chrX 16073127 16073269 -146526661 + L1M4 LINE L1 2606 2742 -3404 307 225 0 28 chrX 16073671 16073742 -146526188 - MIR SINE MIR -55 207 139 1781 124 4 40 chrX 16074006 16074279 -146525651 + AluSx SINE Alu 37 299 -13 330 245 69 0 chrX 16074279 16074381 -146525549 + LTR16A LTR ERVL 237 345 -105 338 61 20 0 chrX 16075059 16075108 -146524822 + (TC)n Simple_repeat Simple_repeat 2 51 0 357 43 0 0 chrX 16075108 16075155 -146524775 + (CA)n Simple_repeat Simple_repeat 1 47 0 2001 154 0 7 chrX 16075268 16075561 -146524369 + AluJb SINE Alu 1 291 -21 956 170 49 40 chrX 16075562 16075828 -146524102 + MLT1A1 LTR MaLR 48 365 0 2032 128 25 71 chrX 16076076 16076468 -146523462 + THE1C LTR MaLR 2 375 0 395 197 40 0 chrX 16076809 16076885 -146523045 - Tigger5 DNA MER2_type 0 2323 2245 331 200 29 0 chrX 16076941 16077011 -146522919 - Tigger5 DNA MER2_type -2251 72 1 2077 251 68 22 chrX 16077015 16077490 -146522440 - L1ME3 LINE L1 -84 6078 5538 2414 110 78 5 chrX 16077490 16077889 -146522041 + MSTA LTR MaLR 1 428 0 2077 251 68 22 chrX 16077889 16078247 -146521683 - L1ME3 LINE L1 -624 5538 5198 1479 174 130 17 chrX 16078356 16078717 -146521213 + LTR37A LTR ERV1 2 403 -23 320 248 28 37 chrX 16079818 16079927 -146520003 - MLT2E LTR ERVL -484 144 37 188 200 0 0 chrX 16080011 16080046 -146519884 + L2 LINE L2 3217 3251 -21 232 352 14 0 chrX 16080309 16080380 -146519550 + MIR SINE MIR 44 115 -93 2003 184 40 7 chrX 16080419 16080865 -146519065 + L1MD3 LINE L1 7527 7987 -8 242 125 25 0 chrX 16080904 16080944 -146518986 + MER45 DNA AcHobo 1541 1581 0 1926 158 0 3 chrX 16081106 16081403 -146518527 + AluJo SINE Alu 1 296 -16 34 24 0 0 chrX 16081405 16081446 -146518484 + AT_rich Low_complexity Low_complexity 1 41 0 338 145 0 16 chrX 16082651 16082713 -146517217 + FLAM_A SINE Alu 63 123 -10 592 239 0 75 chrX 16082807 16083033 -146516897 - MER3 DNA MER1_type 0 209 1 435 136 0 0 chrX 16083246 16083327 -146516603 - L1MA7 LINE L1 0 6291 6211 2198 113 0 7 chrX 16083498 16083799 -146516131 - AluSx SINE Alu -11 301 3 495 343 22 27 chrX 16085394 16085766 -146514164 + L3 LINE CR1 345 789 -788 246 239 0 15 chrX 16085876 16085943 -146513987 - MER103 DNA DNA -44 122 57 1605 148 0 16 chrX 16086125 16086381 -146513549 + AluJb SINE Alu 45 296 -16 2058 155 10 3 chrX 16086475 16086785 -146513145 + AluJb SINE Alu 1 312 0 27 0 0 0 chrX 16086884 16086911 -146513019 + AT_rich Low_complexity Low_complexity 1 27 0 211 296 0 0 chrX 16086976 16087030 -146512900 + L3 LINE CR1 878 931 -646 1956 129 13 19 chrX 16087031 16087342 -146512588 - AluJb SINE Alu -3 309 1 604 331 108 10 chrX 16087755 16088060 -146511870 + L3 LINE CR1 1240 1574 -3 324 241 241 25 chrX 16088301 16088459 -146511471 + L1ME3A LINE L1 5755 5946 -224 788 179 0 93 chrX 16088460 16088658 -146511272 + FRAM SINE Alu 1 47 0 509 231 103 62 chrX 16089564 16089806 -146510124 - MER112 DNA MER1_type -1 259 8 1747 194 0 7 chrX 16090821 16091120 -146508810 - AluJb SINE Alu -15 297 1 38 61 0 0 chrX 16091561 16091627 -146508303 + AT_rich Low_complexity Low_complexity 1 66 0 2296 90 3 7 chrX 16091892 16092182 -146507748 + AluSx SINE Alu 6 294 -18 189 156 44 22 chrX 16093138 16093183 -146506747 - L2 LINE L2 -4 3268 3223 314 136 12 49 chrX 16093383 16093464 -146506466 - L1MC5 LINE L1 -51 7910 7833 529 234 10 88 chrX 16094100 16094292 -146505638 + MER5B DNA MER1_type 2 178 0 187 296 0 0 chrX 16094301 16094345 -146505585 - MER5A DNA MER1_type -1 188 145 237 254 30 0 chrX 16094391 16094458 -146505472 - MER5A DNA MER1_type -112 77 9 189 0 0 0 chrX 16095845 16095866 -146504064 + (A)n Simple_repeat Simple_repeat 1 21 0 1892 160 0 7 chrX 16095873 16096167 -146503763 + AluJo SINE Alu 1 292 -20 512 327 107 30 chrX 16096270 16096570 -146503360 + L2 LINE L2 2895 3217 -55 192 77 0 0 chrX 16096729 16096755 -146503175 + (T)n Simple_repeat Simple_repeat 1 26 0 512 241 78 78 chrX 16097703 16097948 -146501982 - MIR SINE MIR -3 259 15 283 151 226 19 chrX 16097966 16098072 -146501858 - L1ME4a LINE L1 -141 5980 5853 775 286 68 0 chrX 16098133 16098367 -146501563 - MIR SINE MIR -11 251 2 377 257 115 0 chrX 16098516 16098629 -146501301 - L1ME4a LINE L1 -484 5637 5512 1754 142 64 17 chrX 16098645 16098940 -146500990 - AluJo SINE Alu -3 309 1 375 322 63 0 chrX 16099015 16099158 -146500772 + MER58A DNA MER1_type 3 154 0 258 175 0 0 chrX 16099161 16099201 -146500729 + MER58A DNA MER1_type 185 224 0 2106 146 0 0 chrX 16099371 16099665 -146500265 + AluSx SINE Alu 1 294 -18 461 252 8 8 chrX 16099739 16099858 -146500072 + MIR SINE MIR 140 258 -4 1063 171 40 44 chrX 16100123 16100250 -146499680 + L1MDa LINE L1 1853 1980 -4560 1778 148 41 0 chrX 16100250 16100521 -146499409 - AluSq SINE Alu -1 312 31 1063 171 40 44 chrX 16100521 16100645 -146499285 + L1MDa LINE L1 1980 2103 -4437 23 0 0 0 chrX 16100694 16100717 -146499213 + AT_rich Low_complexity Low_complexity 1 23 0 1232 164 0 0 chrX 16100776 16100971 -146498959 + L1MC/D LINE L1 5628 5822 -537 1570 209 119 5 chrX 16101008 16101453 -146498477 + L1MDa LINE L1 2117 2612 -3928 2512 211 24 44 chrX 16101472 16101577 -146498353 + L1MDa LINE L1 2589 2695 -3845 1753 172 197 11 chrX 16101577 16101938 -146497992 + MSTA LTR MaLR 1 428 0 2512 211 24 44 chrX 16101938 16102234 -146497696 + L1MDa LINE L1 2695 2995 -3545 2254 119 0 6 chrX 16102234 16102546 -146497384 + AluSx SINE Alu 1 310 -2 2512 211 24 44 chrX 16102546 16102891 -146497039 + L1MDa LINE L1 2995 3321 -3219 602 124 86 9 chrX 16102906 16103011 -146496919 + L1M1 LINE L1 21 133 -7432 * 17255 131 28 39 chrX 16103008 16103678 -146496252 + L1M1 LINE L1 1099 1775 -5790 2361 90 0 0 chrX 16103678 16103968 -146495962 + AluSx SINE Alu 3 292 -20 17255 131 28 39 chrX 16103968 16104723 -146495207 + L1M1 LINE L1 1775 2537 -5028 1933 143 0 7 chrX 16104723 16105054 -146494876 + AluSx SINE Alu 1 329 0 17255 131 28 39 chrX 16105054 16105652 -146494278 + L1M1 LINE L1 2537 3140 -4425 2198 113 0 0 chrX 16105652 16105954 -146493976 + AluSq SINE Alu 1 302 -11 17255 131 28 39 chrX 16105954 16106155 -146493775 + L1M1 LINE L1 3140 3342 -4223 1935 148 0 20 chrX 16106155 16106459 -146493471 + AluJb SINE Alu 1 298 -14 17255 131 28 39 chrX 16106459 16107834 -146492096 + L1M1 LINE L1 3342 4731 -2834 400 21 0 0 chrX 16107834 16107869 -146492061 + L1PA6 LINE L1 6107 6154 0 17255 131 28 39 chrX 16107869 16108395 -146491535 + L1M1 LINE L1 4731 5261 -2304 2287 100 0 3 chrX 16108395 16108694 -146491236 + AluSg SINE Alu 1 298 -12 17255 131 28 39 chrX 16108694 16108717 -146491213 + L1M1 LINE L1 5261 5283 -2282 1565 172 22 11 chrX 16108717 16108985 -146490945 + AluJo SINE Alu 16 286 -26 17255 131 28 39 chrX 16108985 16109112 -146490818 + L1M1 LINE L1 5283 5324 -2241 4047 187 60 42 chrX 16109112 16109296 -146490634 + L1MD2 LINE L1 5271 5450 -909 1877 78 0 16 chrX 16109296 16109540 -146490390 + AluSc SINE Alu 54 293 -16 4047 187 60 42 chrX 16109540 16110217 -146489713 + L1MD2 LINE L1 5450 6113 -246 243 0 0 0 chrX 16110217 16110244 -146489686 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 273 29 0 0 chrX 16110243 16110277 -146489653 + (CA)n Simple_repeat Simple_repeat 1 34 0 4047 187 60 42 chrX 16110244 16110428 -146489502 + L1MD2 LINE L1 6113 6302 -57 1016 213 8 4 chrX 16110617 16110861 -146489069 + L1MDa LINE L1 1847 2091 -4449 * 1890 164 6 15 chrX 16110858 16111187 -146488743 + L1MD2 LINE L1 5506 5831 -528 1177 206 30 33 chrX 16111175 16111476 -146488454 + L1MD2 LINE L1 6059 6358 -1 * 882 222 17 4 chrX 16111697 16111936 -146487994 + L1MD2 LINE L1 1848 2089 -4451 1961 195 5 5 chrX 16111937 16112306 -146487624 + L1MD2 LINE L1 5902 6270 -483 942 121 0 0 chrX 16112334 16112466 -146487464 + AluSq/x SINE Alu 1 132 -181 227 53 0 26 chrX 16112468 16112506 -146487424 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 1975 114 0 35 chrX 16112515 16112840 -146487090 + AluSx SINE Alu 5 319 0 1139 254 38 0 chrX 16112840 16113155 -146486775 + L1MD2 LINE L1 6427 6753 0 1634 188 23 46 chrX 16113366 16113963 -146485967 + L1MD2 LINE L1 1842 6227 -526 * 2413 206 69 53 chrX 16113961 16114449 -146485481 + L1MD2 LINE L1 5654 6158 -201 315 0 0 0 chrX 16114449 16114484 -146485446 + (CA)n Simple_repeat Simple_repeat 2 36 0 2413 206 69 53 chrX 16114484 16114690 -146485240 + L1MD2 LINE L1 6158 6359 0 466 251 36 41 chrX 16114906 16115075 -146484855 + L1MDa LINE L1 1841 2010 -4530 1558 167 22 7 chrX 16115075 16115345 -146484585 + AluJo SINE Alu 1 274 -38 466 251 36 41 chrX 16115345 16115370 -146484560 + L1MDa LINE L1 2010 2034 -4506 276 30 0 0 chrX 16115374 16115407 -146484523 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 270 156 52 13 chrX 16115407 16115484 -146484446 + L1MDa LINE L1 1998 2077 -4463 2232 106 10 10 chrX 16115494 16115806 -146484124 + AluSx SINE Alu 1 312 0 3265 188 71 33 chrX 16115825 16116629 -146483301 + L1MD2 LINE L1 5508 6345 -14 2282 104 3 0 chrX 16116629 16116928 -146483002 + AluSx SINE Alu 1 300 -12 3265 188 71 33 chrX 16116928 16116943 -146482987 + L1MD2 LINE L1 6345 6358 -1 1332 57 0 0 chrX 16117228 16117385 -146482545 + THE1A LTR MaLR 1 157 -198 8071 29 2 1 chrX 16117404 16118692 -146481238 + L1PA3 LINE L1 4867 6155 0 623 284 27 61 chrX 16118694 16118955 -146480975 + L1MD2 LINE L1 6288 6539 -214 727 179 62 0 chrX 16118969 16119114 -146480816 + L1MD1 LINE L1 6084 6237 -5 479 253 109 23 chrX 16119150 16119371 -146480559 + L1MDa LINE L1 1849 2088 -4452 4208 174 21 41 chrX 16119371 16119697 -146480233 + L1MD2 LINE L1 5506 5837 -522 2396 113 0 0 chrX 16119697 16120007 -146479923 + AluSx SINE Alu 1 310 -2 4208 174 21 41 chrX 16120007 16120550 -146479380 + L1MD2 LINE L1 5837 6357 -2 2509 82 0 6 chrX 16120588 16120903 -146479027 + AluSp SINE Alu 1 313 0 2185 102 3 3 chrX 16120974 16121268 -146478662 - AluSq SINE Alu -18 295 2 933 189 34 13 chrX 16121431 16121669 -146478261 + L1MD2 LINE L1 1847 2089 -4451 2920 194 30 37 chrX 16121670 16121772 -146478158 + L1MD2 LINE L1 5902 6003 -750 439 110 0 90 chrX 16121772 16121830 -146478100 + L1MA10 LINE L1 6244 6296 -38 1502 179 85 48 chrX 16121830 16122182 -146477748 + MLT1A1 LTR MaLR 1 365 0 439 110 0 90 chrX 16122182 16122218 -146477712 + L1MA10 LINE L1 6296 6334 0 2920 194 30 37 chrX 16122218 16122771 -146477159 + L1MD2 LINE L1 6003 6553 -200 713 157 58 0 chrX 16122772 16122893 -146477037 + L1MD1 LINE L1 6115 6242 0 300 285 19 82 chrX 16124665 16124759 -146475171 - L2 LINE L2 0 3272 3190 1698 149 3 122 chrX 16124759 16125102 -146474828 + AluSq SINE Alu 2 303 0 300 285 19 82 chrX 16125102 16125165 -146474765 - L2 LINE L2 -82 3190 3125 852 200 61 11 chrX 16125200 16125380 -146474550 + MER5A DNA MER1_type 1 189 0 609 254 52 17 chrX 16125383 16125556 -146474374 + MIR SINE MIR 5 183 -79 386 266 56 79 chrX 16125668 16125972 -146473958 - L2 LINE L2 -164 3108 2812 2434 80 0 0 chrX 16127213 16127512 -146472418 + AluSq SINE Alu 1 299 -14 2078 117 3 0 chrX 16127682 16127965 -146471965 + AluY SINE Alu 1 284 -27 24 0 0 0 chrX 16128040 16128064 -146471866 + AT_rich Low_complexity Low_complexity 1 24 0 4908 209 23 42 chrX 16128284 16129511 -146470419 + L1MC4a LINE L1 6605 7808 0 22 0 0 0 chrX 16130328 16130350 -146469580 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chrX 16130439 16130489 -146469441 + AT_rich Low_complexity Low_complexity 1 50 0 183 244 183 12 chrX 16130563 16130645 -146469285 - MIR SINE MIR -99 163 68 2147 190 78 60 chrX 16130759 16130977 -146468953 + L1ME2 LINE L1 5539 5752 -412 2304 104 0 0 chrX 16130977 16131274 -146468656 + AluSx SINE Alu 1 297 -15 2147 190 78 60 chrX 16131274 16131569 -146468361 + L1ME2 LINE L1 5752 6067 -97 2417 82 0 13 chrX 16131569 16131875 -146468055 - AluSx SINE Alu -10 302 1 2147 190 78 60 chrX 16131875 16131975 -146467955 + L1ME2 LINE L1 6067 6164 0 260 281 178 15 chrX 16132517 16132652 -146467278 + MIR3 SINE MIR 29 185 -23 186 229 0 0 chrX 16132623 16132658 -146467272 + L3 LINE CR1 1530 1564 -13 * 1906 161 0 22 chrX 16133106 16133422 -146466508 + AluJo SINE Alu 1 309 -3 1245 228 87 21 chrX 16133511 16133615 -146466315 + L1ME3A LINE L1 5763 5859 -311 739 187 8 0 chrX 16133615 16133738 -146466192 + FLAM_A SINE Alu 1 124 -9 1245 228 87 21 chrX 16133738 16134011 -146465919 + L1ME3A LINE L1 5859 6165 -5 2191 101 44 0 chrX 16134018 16134316 -146465614 + AluSx SINE Alu 1 311 -1 387 271 32 7 chrX 16134447 16134602 -146465328 - L1ME4a LINE L1 -260 5861 5703 1099 166 38 19 chrX 16134602 16134813 -146465117 - L1MB4 LINE L1 -18 6162 5948 1539 196 79 25 chrX 16134918 16135234 -146464696 + MER58B DNA MER1_type 1 333 -8 548 274 13 0 chrX 16135486 16135643 -146464287 - L1ME4a LINE L1 -1778 4368 4210 180 111 0 0 chrX 16136395 16136422 -146463508 + (TATG)n Simple_repeat Simple_repeat 3 29 0 315 333 17 17 chrX 16136987 16137107 -146462823 + MIR SINE MIR 32 151 -57 1893 143 16 0 chrX 16137275 16137399 -146462531 + AluJb SINE Alu 1 121 -191 252 0 0 0 chrX 16137399 16137427 -146462503 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1893 143 16 0 chrX 16137427 16137609 -146462321 + AluJb SINE Alu 121 312 0 2200 104 10 0 chrX 16138057 16138366 -146461564 + AluSx SINE Alu 1 312 0 1851 155 0 0 chrX 16139110 16139442 -146460488 + AluJb SINE Alu 11 342 0 221 206 0 15 chrX 16140503 16140571 -146459359 + (TA)n Simple_repeat Simple_repeat 1 67 0 1974 119 20 3 chrX 16141026 16141329 -146458601 - L1PA16 LINE L1 -143 6023 5716 900 169 11 42 chrX 16141824 16142013 -146457917 + LTR41 LTR ERVL 1 183 -590 549 208 10 105 chrX 16142116 16142314 -146457616 + LTR41 LTR ERVL 443 711 -84 2140 133 0 0 chrX 16142314 16142615 -146457315 - AluJb SINE Alu -11 301 1 549 208 10 105 chrX 16142615 16142693 -146457237 + LTR41 LTR ERVL 711 795 0 2288 87 0 0 chrX 16143192 16143481 -146456449 + AluSg1 SINE Alu 1 289 -20 405 0 0 0 chrX 16143483 16143528 -146456402 + (TA)n Simple_repeat Simple_repeat 2 46 0 4508 114 23 36 chrX 16143976 16144099 -146455831 - L1PB3 LINE L1 -1 6153 6030 2075 115 0 0 chrX 16144099 16144369 -146455561 - AluSx SINE Alu -34 278 9 4508 114 23 36 chrX 16144369 16144711 -146455219 - L1PB3 LINE L1 -124 6030 5685 1741 107 0 41 chrX 16144711 16144954 -146454976 + AluSq SINE Alu 51 283 -30 219 69 0 0 chrX 16144960 16144989 -146454941 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 4508 114 23 36 chrX 16144989 16145215 -146454715 - L1PB3 LINE L1 -474 5680 5463 216 273 0 13 chrX 16145890 16145967 -146453963 + MER5B DNA MER1_type 5 80 -98 2245 142 59 30 chrX 16146511 16147026 -146452904 - MLT2A2 LTR ERVL 0 554 3 196 303 87 51 chrX 16149835 16150089 -146449841 - L2 LINE L2 -203 3110 2848 2297 109 0 0 chrX 16150341 16150645 -146449285 + AluSx SINE Alu 1 304 -8 495 68 11 102 chrX 16150645 16150721 -146449209 + HUERS-P1 LTR ERV1 3042 3111 -3152 1760 110 0 8 chrX 16150721 16150957 -146448973 + AluSx SINE Alu 6 239 -73 495 68 11 102 chrX 16150957 16150968 -146448962 + HUERS-P1 LTR ERV1 3111 3121 -3142 * 1770 64 8 28 chrX 16150958 16151208 -146448722 + HUERS-P1 LTR ERV1 3392 3636 -2627 829 125 8 8 chrX 16151937 16152065 -146447865 - FLAM_A SINE Alu -5 128 1 652 315 117 21 chrX 16152537 16152912 -146447018 - L1ME4a LINE L1 -227 5894 5464 2157 121 0 3 chrX 16152912 16153218 -146446712 - L1PA16 LINE L1 -4 6162 5858 652 315 117 21 chrX 16153218 16153312 -146446618 - L1ME4a LINE L1 -657 5464 5380 508 250 66 7 chrX 16153312 16153464 -146446466 + MLT1F1 LTR MaLR 1 161 -381 898 195 32 36 chrX 16153781 16154002 -146445928 + MLT1F1 LTR MaLR 338 557 -10 298 296 21 99 chrX 16154222 16154506 -146445424 + L2 LINE L2 2967 3228 -44 323 227 0 34 chrX 16154785 16154873 -146445057 - HsTC2 DNA Tc2 -1812 86 2 258 247 0 26 chrX 16155347 16155424 -146444506 - L2 LINE L2 -80 3233 3159 1514 125 0 0 chrX 16155527 16155743 -146444187 + AluSg/x SINE Alu 95 310 0 503 178 101 71 chrX 16155775 16155832 -146444098 + MER104 DNA Tc2 5 59 -1839 2358 82 3 0 chrX 16155832 16156125 -146443805 - AluSx SINE Alu -18 294 1 503 178 101 71 chrX 16156125 16156236 -146443694 + MER104 DNA Tc2 59 178 -2 289 261 123 14 chrX 16156836 16156974 -146442956 - Charlie7 DNA MER1_type -2449 163 11 21 0 0 0 chrX 16158807 16158828 -146441102 + AT_rich Low_complexity Low_complexity 1 21 0 2001 93 93 0 chrX 16159201 16159480 -146440450 + AluSp SINE Alu 1 305 -8 193 29 59 0 chrX 16162523 16162557 -146437373 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1925 156 3 0 chrX 16162561 16162849 -146437081 - AluJb SINE Alu -23 289 1 26 0 0 0 chrX 16163945 16163971 -146435959 + AT_rich Low_complexity Low_complexity 1 26 0 423 294 135 12 chrX 16164444 16164607 -146435323 + MIR SINE MIR 8 190 -72 2273 110 3 7 chrX 16165209 16165517 -146434413 - AluSp SINE Alu -6 307 1 1855 96 0 16 chrX 16166484 16166733 -146433197 - AluSq SINE Alu -28 285 41 5027 190 54 32 chrX 16168566 16169699 -146430231 + L1M4 LINE L1 17 1174 -5368 1110 147 0 0 chrX 16169699 16169856 -146430074 - AluSg/x SINE Alu -22 288 132 2459 66 3 10 chrX 16169856 16170159 -146429771 - AluY SINE Alu -10 301 1 400 134 0 49 chrX 16170159 16170241 -146429689 + L1M4 LINE L1 1164 1241 -5301 2612 82 49 25 chrX 16170247 16170613 -146429317 - THE1C LTR MaLR 0 375 1 1181 174 10 0 chrX 16170613 16170814 -146429116 + AluSg/x SINE Alu 106 308 -2 4817 147 45 16 chrX 16170816 16171472 -146428458 + L1MB7 LINE L1 5189 5884 -300 2187 131 0 0 chrX 16171472 16171778 -146428152 + AluSx SINE Alu 5 310 -2 4817 147 45 16 chrX 16171778 16172080 -146427850 + L1MB7 LINE L1 5884 6176 -8 341 329 35 6 chrX 16172866 16173036 -146426894 + L1M4 LINE L1 1242 1416 -5218 2055 227 72 38 chrX 16173038 16173645 -146426285 + L1ME3A LINE L1 5537 6164 -6 2066 138 0 0 chrX 16174118 16174414 -146425516 + AluSx SINE Alu 1 296 -16 495 285 145 19 chrX 16174652 16174866 -146425064 - MIR SINE MIR -2 260 20 185 268 0 36 chrX 16174879 16174935 -146424995 - MIR SINE MIR -138 70 17 2157 116 0 7 chrX 16175645 16175946 -146423984 + AluSx SINE Alu 1 299 -13 2015 166 0 0 chrX 16177082 16177390 -146422540 + AluSx SINE Alu 1 308 -4 534 163 0 0 chrX 16177390 16177488 -146422442 + G-rich Low_complexity Low_complexity 4 101 0 29 70 0 0 chrX 16178205 16178262 -146421668 + AT_rich Low_complexity Low_complexity 1 57 0 2182 120 10 0 chrX 16178458 16178767 -146421163 + AluSx SINE Alu 1 312 0 727 124 80 0 chrX 16180653 16180766 -146419164 - FLAM_C SINE Alu -13 130 9 282 196 0 5 chrX 16180981 16181052 -146418878 + L1MA4A LINE L1 6238 6305 0 1021 232 101 108 chrX 16181659 16181814 -146418116 - L1ME LINE L1 -4023 2238 2083 2384 99 0 0 chrX 16181814 16182117 -146417813 - AluSx SINE Alu -9 303 1 1021 232 101 108 chrX 16182117 16182178 -146417752 - L1ME LINE L1 -4178 2083 2023 1861 172 0 13 chrX 16182178 16182492 -146417438 - AluJb SINE Alu -2 310 1 1021 232 101 108 chrX 16182492 16183037 -146416893 - L1ME LINE L1 -4238 2023 1481 294 75 19 19 chrX 16183181 16183234 -146416696 - L1MA9 LINE L1 -1 6311 6259 * 2743 255 58 42 chrX 16183224 16183908 -146416022 - L1ME LINE L1 -4605 1475 804 462 18 0 0 chrX 16183908 16183963 -146415967 + (TG)n Simple_repeat Simple_repeat 2 56 0 2743 255 58 42 chrX 16183963 16184671 -146415259 - L1ME LINE L1 -5276 804 63 237 104 104 134 chrX 16184721 16184788 -146415142 - L1ME1 LINE L1 -5 6161 6097 326 161 49 12 chrX 16185740 16185821 -146414109 - L1MA9 LINE L1 0 6312 6229 665 276 74 15 chrX 16186968 16187051 -146412879 - MER58C DNA MER1_type -2205 215 138 2410 62 0 44 chrX 16187051 16187372 -146412558 - AluY SINE Alu -4 307 1 665 276 74 15 chrX 16187372 16187491 -146412439 - MER58C DNA MER1_type -2282 138 1 2216 118 3 0 chrX 16187724 16188021 -146411909 + AluSq SINE Alu 1 298 -15 1481 19 0 0 chrX 16188096 16188257 -146411673 + L1PA3 LINE L1 5995 6155 0 2553 107 24 24 chrX 16188655 16189030 -146410900 + THE1C LTR MaLR 1 375 0 23 54 0 0 chrX 16189415 16189452 -146410478 + AT_rich Low_complexity Low_complexity 1 37 0 1267 105 0 0 chrX 16189505 16189667 -146410263 - AluSg/x SINE Alu -13 299 138 1844 98 4 0 chrX 16239667 16239903 -146360027 - AluSx SINE Alu -75 237 1 741 162 0 66 chrX 16239979 16240115 -146359815 - FRAM SINE Alu -13 163 37 195 256 0 0 chrX 16240118 16240157 -146359773 + L2 LINE L2 3225 3263 -50 219 167 0 0 chrX 16240248 16240290 -146359640 + (CATA)n Simple_repeat Simple_repeat 4 45 0 467 279 95 0 chrX 16240730 16240888 -146359042 - MIR SINE MIR -8 254 82 180 0 0 0 chrX 16240956 16240976 -146358954 + (CAA)n Simple_repeat Simple_repeat 2 21 0 406 130 0 200 chrX 16241183 16241298 -146358632 - Tigger7 DNA MER2_type -1 2486 2395 * 901 134 0 7 chrX 16241291 16241433 -146358497 - Tigger7 DNA MER2_type -208 525 385 224 322 154 50 chrX 16242398 16243112 -146356818 + L2 LINE L2 1694 2481 -833 2064 169 164 93 chrX 16243196 16243892 -146356038 + LTR1B LTR ERV1 1 745 -81 229 333 111 30 chrX 16244002 16244236 -146355694 + L2 LINE L2 2595 2847 -467 3007 121 72 31 chrX 16244274 16244819 -146355111 + MER4B LTR ERV1 1 567 -43 331 370 41 14 chrX 16245096 16245242 -146354688 + L2 LINE L2 3116 3265 -7 1278 177 24 47 chrX 16245434 16245593 -146354337 + L1MB5 LINE L1 5428 5580 -594 2078 117 17 0 chrX 16245593 16245892 -146354038 + AluSx SINE Alu 1 304 -8 1278 177 24 47 chrX 16245892 16245986 -146353944 + L1MB5 LINE L1 5580 5675 -499 247 22 0 87 chrX 16246060 16246106 -146353824 + (CATA)n Simple_repeat Simple_repeat 4 45 0 2840 157 17 13 chrX 16246108 16246586 -146353344 + L1MB5 LINE L1 5695 6174 0 2117 136 0 3 chrX 16246645 16246947 -146352983 - AluJb SINE Alu -11 301 1 385 280 51 57 chrX 16247013 16247170 -146352760 - MIR SINE MIR -87 175 20 991 294 23 55 chrX 16247405 16247461 -146352469 + L1PA16 LINE L1 789 845 -6729 1918 146 31 7 chrX 16247461 16247755 -146352175 + AluJb SINE Alu 1 301 -11 991 294 23 55 chrX 16247755 16248137 -146351793 + L1PA16 LINE L1 845 1213 -6361 13994 206 27 14 chrX 16248799 16251006 -146348924 + L1PA16 LINE L1 2259 4435 -3169 2231 113 0 0 chrX 16251006 16251307 -146348623 + AluSx SINE Alu 1 301 -11 13994 206 27 14 chrX 16251307 16251418 -146348512 + L1PA16 LINE L1 4435 4543 -3061 2373 90 3 0 chrX 16251418 16251719 -146348211 + AluSp SINE Alu 1 302 -11 13994 206 27 14 chrX 16251719 16251932 -146347998 + L1PA16 LINE L1 4543 4752 -2852 2006 160 0 0 chrX 16251932 16252225 -146347705 + AluJb SINE Alu 1 293 -19 13994 206 27 14 chrX 16252225 16254335 -146345595 + L1PA16 LINE L1 4752 6988 -616 2332 84 7 3 chrX 16254335 16254634 -146345296 + AluSp SINE Alu 1 300 -13 13994 206 27 14 chrX 16254634 16255251 -146344679 + L1PA16 LINE L1 6988 7595 -9 23 33 0 0 chrX 16255601 16255631 -146344299 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chrX 16260263 16260306 -146339624 + AT_rich Low_complexity Low_complexity 1 43 0 331 279 81 25 chrX 16261547 16261708 -146338222 + L1ME4a LINE L1 5255 5424 -2384 548 283 140 22 chrX 16261729 16262129 -146337801 + L1ME4a LINE L1 5462 5908 -213 396 287 54 73 chrX 16262242 16262559 -146337371 - L1MC4a LINE L1 -1749 6059 5749 485 329 46 18 chrX 16263276 16263668 -146336262 + L1MEc LINE L1 1410 1812 -4584 7737 182 34 115 chrX 16263743 16266132 -146333798 + L1M1 LINE L1 -413 1783 -4644 * 9719 132 29 57 chrX 16266130 16267284 -146332646 + L1M1 LINE L1 3571 4756 -1827 1749 172 44 0 chrX 16267284 16267388 -146332542 + AluJb SINE Alu 3 101 -211 209 57 29 0 chrX 16267388 16267423 -146332507 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1749 172 44 0 chrX 16267423 16267615 -146332315 + AluJb SINE Alu 101 312 0 9719 132 29 57 chrX 16267615 16268151 -146331779 + L1M1 LINE L1 4756 5306 -1277 1569 108 138 11 chrX 16268151 16268420 -146331510 + AluSg1 SINE Alu 1 303 -6 9719 132 29 57 chrX 16268420 16268808 -146331122 + L1M1 LINE L1 5306 5704 -879 2187 100 0 17 chrX 16268808 16269107 -146330823 + AluY SINE Alu 1 294 -17 9719 132 29 57 chrX 16269107 16269311 -146330619 + L1M1 LINE L1 5704 5792 -791 1703 181 3 23 chrX 16269311 16269615 -146330315 - AluJo SINE Alu -14 298 1 9719 132 29 57 chrX 16269615 16269693 -146330237 + L1M1 LINE L1 5792 5871 -712 2192 122 0 0 chrX 16269694 16269989 -146329941 + AluJb SINE Alu 1 295 -17 2275 124 0 0 chrX 16270085 16270391 -146329539 + AluSx SINE Alu 1 306 -6 1771 182 100 80 chrX 16270451 16270692 -146329238 + L1M2 LINE L1 1449 1684 -4742 2222 128 0 0 chrX 16270692 16271004 -146328926 + AluSx SINE Alu 1 312 0 1771 182 100 80 chrX 16271004 16271066 -146328864 + L1M2 LINE L1 1684 1743 -4683 1719 184 0 17 chrX 16271066 16271360 -146328570 + AluJb SINE Alu 1 289 -23 1771 182 100 80 chrX 16271360 16271652 -146328278 + L1M2 LINE L1 1743 2815 -3611 189 107 0 0 chrX 16271709 16271737 -146328193 + (T)n Simple_repeat Simple_repeat 1 28 0 205 342 112 25 chrX 16271828 16272024 -146327906 + L2 LINE L2 1937 2149 -1165 224 250 36 36 chrX 16272043 16272127 -146327803 + MER5A DNA MER1_type 77 160 -29 267 350 10 21 chrX 16272332 16272429 -146327501 + L2 LINE L2 2225 2320 -994 1083 262 118 38 chrX 16272441 16272914 -146327016 - MLT1J LTR MaLR 0 511 1 247 250 0 0 chrX 16273207 16273259 -146326671 + L2 LINE L2 3183 3234 -79 1232 121 0 0 chrX 16273611 16273785 -146326145 - AluSq SINE Alu -8 305 132 405 207 141 16 chrX 16275033 16275154 -146324776 - L2 LINE L2 -1 3312 3177 21 0 0 0 chrX 16275330 16275351 -146324579 + AT_rich Low_complexity Low_complexity 1 21 0 360 227 73 27 chrX 16275714 16275824 -146324106 - MER5B DNA MER1_type -62 116 2 215 200 25 0 chrX 16275883 16275923 -146324007 - MIR SINE MIR -193 69 29 855 140 0 21 chrX 16276402 16276545 -146323385 - FLAM_C SINE Alu -3 140 1 1789 138 0 34 chrX 16276584 16276875 -146323055 + AluJb SINE Alu 14 294 -18 2002 134 7 10 chrX 16277270 16277402 -146322528 + AluJb SINE Alu 1 132 -180 2214 102 3 0 chrX 16277402 16277686 -146322244 + AluSg SINE Alu 13 297 -13 2002 134 7 10 chrX 16277686 16277859 -146322071 + AluJb SINE Alu 132 305 -7 484 99 0 44 chrX 16277860 16277951 -146321979 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 1442 128 204 15 chrX 16277951 16278404 -146321526 + L1MA4 LINE L1 5192 5769 -534 * 5123 99 19 34 chrX 16278392 16278503 -146321427 + L1PA15 LINE L1 5334 5445 -720 2021 120 31 3 chrX 16278503 16278795 -146321135 + AluSx SINE Alu 1 300 -12 5123 99 19 34 chrX 16278795 16279528 -146320402 + L1PA15 LINE L1 5445 6165 0 835 69 69 0 chrX 16279530 16279661 -146320269 + L1MA4 LINE L1 5743 5882 -418 2512 69 7 0 chrX 16279837 16280142 -146319788 - AluSx SINE Alu -5 307 1 278 50 17 50 chrX 16280142 16280202 -146319728 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 721 150 0 33 chrX 16280206 16280326 -146319604 - FLAM_A SINE Alu -17 116 1 507 285 184 17 chrX 16280405 16280693 -146319237 + L2 LINE L2 2922 3257 -56 2873 230 114 36 chrX 16280788 16281357 -146318573 - L2 LINE L2 0 3313 2790 2152 129 0 3 chrX 16281357 16281668 -146318262 - AluSq SINE Alu -3 310 1 2873 230 114 36 chrX 16281668 16281843 -146318087 - L2 LINE L2 -523 2790 2630 1289 179 78 87 chrX 16281843 16282190 -146317740 + MER2 DNA MER2_type 1 344 0 2873 230 114 36 chrX 16282190 16282496 -146317434 - L2 LINE L2 -683 2630 2171 286 171 224 0 chrX 16282504 16282549 -146317381 - MER20 DNA MER1_type -1 218 184 420 71 0 0 chrX 16282549 16282605 -146317325 + (TG)n Simple_repeat Simple_repeat 2 57 0 286 171 224 0 chrX 16282605 16282635 -146317295 - MER20 DNA MER1_type -35 184 126 2745 68 11 0 chrX 16282773 16283124 -146316806 + THE1A LTR MaLR 1 355 0 202 27 0 54 chrX 16283420 16283457 -146316473 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 516 165 0 82 chrX 16283461 16283558 -146316372 - AluJb SINE Alu -34 278 190 200 202 32 128 chrX 16283731 16283825 -146316105 - MIR SINE MIR -4 258 174 * 538 329 96 31 chrX 16283783 16284169 -146315761 + L2 LINE L2 1961 2371 -943 221 318 142 67 chrX 16284205 16284383 -146315547 - L2 LINE L2 -1 3271 3065 2150 122 0 31 chrX 16284383 16284704 -146315226 + AluSx SINE Alu 1 311 -1 221 318 142 67 chrX 16284704 16284792 -146315138 - L2 LINE L2 -207 3065 2985 344 314 144 38 chrX 16284903 16285104 -146314826 - L2 LINE L2 -500 2814 2583 1264 197 122 55 chrX 16285104 16285521 -146314409 + MER65A LTR ERV1 1 445 0 344 314 144 38 chrX 16285521 16285555 -146314375 - L2 LINE L2 -731 2583 2554 341 250 48 111 chrX 16285658 16285683 -146314247 + L1ME3A LINE L1 5306 5331 -2477 2247 113 0 0 chrX 16285683 16285983 -146313947 + AluSx SINE Alu 1 300 -12 341 250 48 111 chrX 16285983 16286209 -146313721 + L1ME3A LINE L1 5331 5541 -2267 1567 141 47 34 chrX 16286223 16286582 -146313348 + Charlie3 DNA MER1_type 1 2712 0 633 165 124 0 chrX 16286660 16286781 -146313149 - AluJo SINE Alu -176 136 1 318 309 128 50 chrX 16286781 16287079 -146312851 + L1ME3A LINE L1 5602 5922 -199 2745 13 0 7 chrX 16287127 16287436 -146312494 + AluY SINE Alu 1 307 -4 23 33 0 0 chrX 16287576 16287606 -146312324 + AT_rich Low_complexity Low_complexity 1 30 0 2028 121 35 18 chrX 16288421 16288685 -146311245 + MLT1B LTR MaLR 1 259 -131 1889 125 57 0 chrX 16288685 16288966 -146310964 + AluSx SINE Alu 1 297 -15 1638 107 21 9 chrX 16288966 16289198 -146310732 + AluSg/x SINE Alu 73 308 -4 2028 121 35 18 chrX 16289198 16289270 -146310660 + MLT1B LTR MaLR 258 344 -46 1075 181 56 38 chrX 16289271 16289537 -146310393 + MLT1B LTR MaLR 1 271 -119 834 55 18 0 chrX 16289679 16289789 -146310141 + MLT1B LTR MaLR 279 390 0 384 268 32 114 chrX 16290508 16290728 -146309202 + L1MC4 LINE L1 7826 8027 -15 189 0 0 0 chrX 16291175 16291196 -146308734 + (A)n Simple_repeat Simple_repeat 1 21 0 604 242 65 26 chrX 16291432 16291663 -146308267 + L1ME3A LINE L1 5922 6161 -9 2408 62 3 0 chrX 16292188 16292479 -146307451 + AluSq SINE Alu 1 292 -21 265 305 107 42 chrX 16293873 16294194 -146305736 + L2 LINE L2 2641 2979 -293 874 249 5 5 chrX 16295550 16295751 -146304179 + MER63A DNA MER1_type 8 208 -2 213 229 21 0 chrX 16295754 16295802 -146304128 + (TATG)n Simple_repeat Simple_repeat 4 52 0 2258 104 17 3 chrX 16295978 16296277 -146303653 + AluSx SINE Alu 1 303 -9 625 266 65 15 chrX 16296280 16296479 -146303451 + MIR SINE MIR 28 236 -26 2052 91 23 19 chrX 16296665 16296974 -146302956 + AluSq SINE Alu 1 310 -3 1813 161 3 7 chrX 16297965 16298250 -146301680 + AluJo SINE Alu 1 284 -28 237 306 83 0 chrX 16298267 16298339 -146301591 + L2 LINE L2 3168 3245 -27 * 453 211 0 11 chrX 16298325 16298415 -146301515 - L2 LINE L2 -37 3276 3188 1437 135 8 53 chrX 16298500 16298766 -146301164 + L1MB8 LINE L1 5920 6173 -5 660 265 27 55 chrX 16299232 16299372 -146300558 - MIR SINE MIR 0 262 131 2225 129 0 0 chrX 16299372 16299674 -146300256 + AluSx SINE Alu 1 302 -10 660 265 27 55 chrX 16299674 16299790 -146300140 - MIR SINE MIR -131 131 13 535 249 34 67 chrX 16300343 16300552 -146299378 + L2 LINE L2 3112 3313 0 2346 96 3 3 chrX 16300554 16300866 -146299064 + AluSx SINE Alu 1 312 0 2497 197 54 82 chrX 16301062 16301964 -146297966 - L1MC5 LINE L1 -194 7767 6891 388 237 79 72 chrX 16302107 16302259 -146297671 + L1MC5 LINE L1 7087 7239 -722 1573 189 0 15 chrX 16302269 16302533 -146297397 + AluJo SINE Alu 1 260 -52 23 0 0 0 chrX 16302547 16302570 -146297360 + AT_rich Low_complexity Low_complexity 1 23 0 2029 147 0 13 chrX 16302570 16302884 -146297046 + AluJb SINE Alu 1 310 -2 235 186 0 124 chrX 16302897 16302994 -146296936 + L1MC5 LINE L1 7238 7322 -639 324 281 141 7 chrX 16303367 16303502 -146296428 + MIR3 SINE MIR 50 202 -6 946 178 0 72 chrX 16303802 16304010 -146295920 + L1MB7 LINE L1 5973 6165 -19 644 129 0 0 chrX 16304507 16304600 -146295330 + AluJ/FLAM SINE Alu 2 94 -218 2123 146 0 0 chrX 16304798 16305099 -146294831 + AluJb SINE Alu 1 301 -11 1523 207 52 26 chrX 16305313 16305734 -146294196 + L1M4 LINE L1 4484 4915 -1231 2368 73 14 0 chrX 16305742 16306030 -146293900 + AluSc SINE Alu 4 295 -14 2422 78 0 3 chrX 16306031 16306339 -146293591 + AluY SINE Alu 1 307 -4 1259 155 56 0 chrX 16306356 16306608 -146293322 + L1MCa LINE L1 2163 2428 -3998 2242 92 0 14 chrX 16306616 16306910 -146293020 + AluSx SINE Alu 21 310 -2 3005 220 31 20 chrX 16306939 16307738 -146292192 + L1MCa LINE L1 2514 3321 -3105 2275 117 0 0 chrX 16307738 16308047 -146291883 + AluSx SINE Alu 1 309 -3 812 132 78 42 chrX 16308047 16308207 -146291723 + L1MA7 LINE L1 5881 6049 -242 2167 129 0 19 chrX 16308207 16308525 -146291405 + AluJb SINE Alu 1 312 0 1571 174 3 40 chrX 16309003 16309325 -146290605 + AluJo SINE Alu 1 310 -2 283 279 78 39 chrX 16309384 16309563 -146290367 - L1ME4a LINE L1 0 6121 5936 1691 164 25 4 chrX 16309709 16309990 -146289940 + AluJb SINE Alu 1 287 -25 2382 100 0 0 chrX 16310104 16310403 -146289527 + AluSx SINE Alu 1 299 -13 23 0 0 0 chrX 16311156 16311179 -146288751 + AT_rich Low_complexity Low_complexity 1 23 0 2376 94 0 0 chrX 16312006 16312303 -146287627 + AluSx SINE Alu 1 297 -15 231 170 0 0 chrX 16312684 16312731 -146287199 + T-rich Low_complexity Low_complexity 1 47 0 2252 97 3 6 chrX 16313056 16313367 -146286563 + AluSg SINE Alu 1 310 0 834 125 0 23 chrX 16313395 16313562 -146286368 + FLAM_C SINE Alu 17 180 0 34 19 0 19 chrX 16313603 16313628 -146286302 + AT_rich Low_complexity Low_complexity 1 25 -26 928 118 0 0 chrX 16313628 16313755 -146286175 + FLAM_C SINE Alu 1 127 -6 34 19 0 19 chrX 16313755 16313781 -146286149 + AT_rich Low_complexity Low_complexity 25 51 0 2100 143 60 17 chrX 16314038 16314387 -146285543 + THE1B LTR MaLR 1 364 0 340 215 59 129 chrX 16314518 16314704 -146285226 - MIR SINE MIR -13 249 77 316 268 71 39 chrX 16314781 16314908 -146285022 + L2 LINE L2 3141 3271 -1 1946 144 7 3 chrX 16314977 16315262 -146284668 - AluJb SINE Alu -20 292 7 1522 124 3 150 chrX 16315291 16315645 -146284285 - AluJb SINE Alu 0 302 1 2264 117 0 0 chrX 16316739 16317038 -146282892 + AluSq SINE Alu 1 299 -14 1878 127 99 0 chrX 16317046 16317329 -146282601 + AluSx SINE Alu 1 311 -1 21 0 0 0 chrX 16318433 16318454 -146281476 + AT_rich Low_complexity Low_complexity 1 21 0 2242 113 0 19 chrX 16319085 16319396 -146280534 + AluSx SINE Alu 1 305 -7 1848 113 16 68 chrX 16319557 16319867 -146280063 + AluSx SINE Alu 1 294 -18 2267 115 0 10 chrX 16319867 16320172 -146279758 + AluSx SINE Alu 1 302 -10 1049 147 13 0 chrX 16320172 16320329 -146279601 + AluSg/x SINE Alu 132 290 -20 2131 122 0 3 chrX 16320563 16320859 -146279071 + AluSx SINE Alu 1 295 -17 31 0 0 0 chrX 16324298 16324329 -146275601 + GC_rich Low_complexity Low_complexity 1 31 0 2288 76 0 3 chrX 16325626 16325914 -146274016 - AluY SINE Alu -24 287 1 2681 46 0 3 chrX 16325941 16326248 -146273682 + AluSp SINE Alu 1 306 -7 349 211 84 78 chrX 16326722 16326864 -146273066 - MIR SINE MIR 0 262 120 234 216 0 0 chrX 16327103 16327154 -146272776 + L2 LINE L2 3263 3313 0 2420 86 0 0 chrX 16327554 16327857 -146272073 + AluSq SINE Alu 1 303 -10 201 287 139 41 chrX 16328679 16328801 -146271129 - L2 LINE L2 -2 3270 3137 1866 110 3 73 chrX 16328988 16329288 -146270642 + AluJb SINE Alu 17 295 -17 1949 139 3 3 chrX 16330037 16330325 -146269605 + AluJb SINE Alu 1 288 -24 1121 228 58 32 chrX 16330716 16330836 -146269094 - L1ME3 LINE L1 0 6162 6047 1344 158 39 84 chrX 16330836 16331147 -146268783 + AluJo SINE Alu 1 297 -15 1121 228 58 32 chrX 16331147 16331338 -146268592 - L1ME3 LINE L1 -115 6047 5843 2075 115 28 0 chrX 16331630 16331918 -146268012 + AluSp SINE Alu 1 296 -17 2375 95 0 0 chrX 16331921 16332227 -146267703 + AluSq SINE Alu 3 308 -5 2273 155 73 0 chrX 16332422 16332821 -146267109 + MSTA LTR MaLR 1 428 0 1632 191 81 99 chrX 16333384 16333532 -146266398 - L1MC5 LINE L1 -101 7860 7711 2395 80 0 29 chrX 16333532 16333845 -146266085 - AluSq SINE Alu -9 304 1 1632 191 81 99 chrX 16333845 16333868 -146266062 - L1MC5 LINE L1 -250 7711 7689 1866 130 88 161 chrX 16333868 16333925 -146266005 - MLT1D LTR MaLR 0 505 445 2064 103 41 24 chrX 16333925 16334058 -146265872 + AluSx SINE Alu 1 130 -182 2388 77 0 46 chrX 16334058 16334382 -146265548 + AluSx SINE Alu 1 309 -3 2064 103 41 24 chrX 16334382 16334540 -146265390 + AluSx SINE Alu 130 297 -15 1866 130 88 161 chrX 16334540 16334767 -146265163 - MLT1D LTR MaLR -60 445 277 1577 195 0 3 chrX 16334767 16335049 -146264881 - AluJo SINE Alu -31 281 1 1866 130 88 161 chrX 16335049 16335308 -146264622 - MLT1D LTR MaLR -228 277 1 1632 191 81 99 chrX 16335308 16335415 -146264515 - L1MC5 LINE L1 -272 7689 7582 2288 74 0 7 chrX 16335415 16335700 -146264230 + AluSc SINE Alu 2 284 -25 1632 191 81 99 chrX 16335700 16335780 -146264150 - L1MC5 LINE L1 -379 7582 7502 2180 110 3 13 chrX 16335780 16336080 -146263850 - AluSx SINE Alu -15 297 1 1632 191 81 99 chrX 16336080 16336394 -146263536 - L1MC5 LINE L1 -459 7502 7197 896 201 17 6 chrX 16336401 16336580 -146263350 + MER5A DNA MER1_type 1 181 -8 2024 157 0 3 chrX 16336580 16336893 -146263037 + AluJo SINE Alu 1 312 0 858 151 0 0 chrX 16337159 16337285 -146262645 + FLAM_C SINE Alu 2 127 -6 2144 82 4 0 chrX 16337330 16337599 -146262331 + AluSq SINE Alu 1 270 -43 2488 86 3 3 chrX 16338936 16339249 -146260681 - AluSq SINE Alu 0 313 1 865 194 41 36 chrX 16339362 16339558 -146260372 - MER3 DNA MER1_type -4 205 9 550 234 163 0 chrX 16339588 16339729 -146260201 + MER5A DNA MER1_type 26 189 0 1873 172 0 3 chrX 16339776 16340073 -146259857 + AluSx SINE Alu 1 296 -16 245 264 0 0 chrX 16340074 16340127 -146259803 + MSTD LTR MaLR 51 103 -271 838 158 0 29 chrX 16340127 16340266 -146259664 + FRAM SINE Alu 21 155 -21 2040 89 63 7 chrX 16340271 16340573 -146259357 + AluSc SINE Alu 2 309 0 1085 192 133 31 chrX 16340589 16340844 -146259086 + MSTD LTR MaLR 116 396 0 4776 212 13 55 chrX 16340846 16341026 -146258904 + MSTD-int LTR MaLR 2 188 -1547 1622 136 4 38 chrX 16341026 16341290 -146258640 + AluSx SINE Alu 44 298 -14 4776 212 13 55 chrX 16341290 16342262 -146257668 + MSTD-int LTR MaLR 188 1105 -630 2378 97 0 0 chrX 16342295 16342593 -146257337 - AluSx SINE Alu -14 298 1 254 261 90 67 chrX 16343011 16343145 -146256785 - L2 LINE L2 -10 3262 3126 1005 133 22 17 chrX 16343599 16343749 -146256181 - L1MA10 LINE L1 -8 6326 6173 2543 79 0 0 chrX 16343749 16344054 -146255876 - AluSx SINE Alu -7 305 1 1005 133 22 17 chrX 16344054 16344083 -146255847 - L1MA10 LINE L1 -161 6173 6146 2184 98 0 7 chrX 16344084 16344379 -146255551 + AluSg SINE Alu 2 294 -16 278 329 15 29 chrX 16344382 16344519 -146255411 + MER51A-int LTR ERV1 6202 6336 -869 1007 156 23 0 chrX 16344662 16344835 -146255095 - MER51-int LTR ERV1 -112 7704 6831 2131 142 0 0 chrX 16344835 16345137 -146254793 + AluSx SINE Alu 1 302 -10 1705 229 26 13 chrX 16345267 16345840 -146254090 + MER51A-int LTR ERV1 6548 7816 0 2985 114 211 2 chrX 16345841 16346055 -146253875 + MER51A LTR ERV1 1 169 -465 1911 109 64 18 chrX 16346055 16346338 -146253592 - AluSg SINE Alu -6 304 9 2985 114 211 2 chrX 16346338 16346640 -146253290 + MER51A LTR ERV1 169 625 -9 1784 151 38 3 chrX 16346930 16347222 -146252708 + AluJo SINE Alu 1 302 -10 1052 157 12 0 chrX 16347228 16347400 -146252530 + FRAM SINE Alu 1 174 -2 415 236 94 16 chrX 16347531 16347669 -146252261 - LTR50 LTR ERVL -578 195 39 441 197 51 0 chrX 16347669 16347780 -146252150 + L1ME3A LINE L1 5487 5605 -559 2286 115 0 10 chrX 16347788 16348093 -146251837 + AluSx SINE Alu 1 302 -10 842 232 56 47 chrX 16348149 16348271 -146251659 + L1ME3A LINE L1 5578 5697 -473 1947 138 10 10 chrX 16348271 16348567 -146251363 + AluJo SINE Alu 3 298 -14 842 232 56 47 chrX 16348567 16348784 -146251146 + L1ME3A LINE L1 5697 5920 -250 2064 118 0 0 chrX 16349069 16349357 -146250573 - AluSx SINE Alu -9 303 16 2188 100 3 3 chrX 16349477 16349777 -146250153 + AluSx SINE Alu 1 300 -12 2219 187 30 8 chrX 16349778 16350249 -146249681 - L1M4 LINE L1 -1293 5133 4653 971 180 0 22 chrX 16350254 16350437 -146249493 - AluJb SINE Alu -22 290 112 2837 185 51 26 chrX 16350464 16350798 -146249132 - L1MCa LINE L1 -3667 2759 2435 2188 114 0 3 chrX 16350798 16351106 -146248824 - AluJb SINE Alu -5 307 1 2837 185 51 26 chrX 16351106 16351568 -146248362 - L1MCa LINE L1 -3991 2435 1924 2097 106 33 0 chrX 16351573 16351875 -146248055 + AluSx SINE Alu 1 312 0 2343 81 0 0 chrX 16353255 16353553 -146246377 + AluSq SINE Alu 1 298 -15 2198 87 0 40 chrX 16353928 16354250 -146245680 + AluSq SINE Alu 1 309 -4 1533 196 113 60 chrX 16354261 16354318 -146245612 - MLT1D LTR MaLR 0 505 452 1612 195 0 7 chrX 16354318 16354620 -146245310 + AluJo SINE Alu 1 300 -12 1533 196 113 60 chrX 16354620 16354876 -146245054 - MLT1D LTR MaLR -53 452 156 2261 101 0 0 chrX 16354876 16355182 -146244748 + AluSq SINE Alu 1 306 -7 1533 196 113 60 chrX 16355182 16355346 -146244584 - MLT1D LTR MaLR -349 156 2 534 251 170 0 chrX 16355362 16355549 -146244381 - MIR SINE MIR -3 259 41 1574 118 24 52 chrX 16355594 16355770 -146244160 - AluJo SINE Alu 0 309 143 2205 111 0 0 chrX 16355770 16356077 -146243853 - AluSp SINE Alu -6 307 1 1574 118 24 52 chrX 16356077 16356217 -146243713 - AluJo SINE Alu -166 143 1 1661 213 129 48 chrX 16356446 16356522 -146243408 - MLT1F LTR MaLR -28 514 446 1918 133 3 13 chrX 16356522 16356657 -146243273 + AluSx SINE Alu 1 136 -176 2203 84 24 0 chrX 16356657 16356953 -146242977 + AluSg SINE Alu 1 303 -7 1918 133 3 13 chrX 16356953 16357118 -146242812 + AluSx SINE Alu 136 298 -14 1661 213 129 48 chrX 16357118 16357515 -146242415 - MLT1F LTR MaLR -96 446 3 931 262 31 66 chrX 16357536 16357960 -146241970 + MLT1K LTR MaLR 180 588 0 1687 139 9 59 chrX 16358011 16358335 -146241595 + AluJo SINE Alu 1 308 -4 2053 94 4 0 chrX 16358338 16358615 -146241315 + AluSx SINE Alu 29 306 -6 2248 79 10 3 chrX 16358978 16359282 -146240648 + AluSx SINE Alu 2 307 -5 1933 118 0 14 chrX 16359759 16360075 -146239855 - AluSx SINE Alu 0 312 1 370 214 90 0 chrX 16360351 16360440 -146239490 + MER5A DNA MER1_type 9 105 -84 198 156 0 0 chrX 16360536 16360581 -146239349 + (CAAAC)n Simple_repeat Simple_repeat 1 45 0 180 0 0 0 chrX 16360637 16360657 -146239273 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1895 81 0 0 chrX 16361010 16361257 -146238673 + AluSx SINE Alu 57 303 -9 1722 146 14 0 chrX 16361849 16362130 -146237800 + AluJo SINE Alu 1 285 -27 297 0 0 0 chrX 16362139 16362172 -146237758 + (TTTAA)n Simple_repeat Simple_repeat 2 34 0 688 158 42 0 chrX 16362213 16362333 -146237597 + FRAM SINE Alu 49 173 -3 650 125 17 203 chrX 16362360 16362456 -146237474 + MER53 DNA DNA 1 113 -76 1854 84 18 131 chrX 16362456 16362508 -146237422 - L1MA3 LINE L1 0 6305 6249 2327 113 48 22 chrX 16362508 16362863 -146237067 - THE1B LTR MaLR 0 364 1 1854 84 18 131 chrX 16362863 16363053 -146236877 - L1MA3 LINE L1 -56 6249 6119 2115 100 0 0 chrX 16363053 16363343 -146236587 - AluSg1 SINE Alu -19 290 1 1854 84 18 131 chrX 16363343 16363481 -146236449 - L1MA3 LINE L1 -186 6119 5967 650 125 17 203 chrX 16363481 16363584 -146236346 + MER53 DNA DNA 113 233 44 339 78 0 0 chrX 16363584 16363635 -146236295 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 2299 43 0 0 chrX 16363637 16363919 -146236011 - AluY SINE Alu -29 282 1 650 125 17 203 chrX 16363919 16363947 -146235983 + MER53 DNA DNA 157 189 0 290 206 183 38 chrX 16364083 16364214 -146235716 - LTR33 LTR ERVL -284 237 88 482 215 47 19 chrX 16364245 16364352 -146235578 - MER63 DNA MER1_type -326 736 1 249 247 39 26 chrX 16364352 16364428 -146235502 - LTR33 LTR ERVL -442 79 3 296 279 81 12 chrX 16364493 16364579 -146235351 + LTR33 LTR ERVL 273 364 -157 1054 247 50 34 chrX 16364581 16364937 -146234993 - LTR41 LTR ERVL 0 795 417 496 202 207 80 chrX 16365002 16365152 -146234778 - LTR41 LTR ERVL -501 272 92 2032 105 0 37 chrX 16365152 16365190 -146234740 - AluSx SINE Alu 0 312 274 188 33 0 33 chrX 16365190 16365220 -146234710 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2032 105 0 37 chrX 16365220 16365505 -146234425 - AluSx SINE Alu -38 274 1 496 202 207 80 chrX 16365505 16365542 -146234388 - LTR41 LTR ERVL -681 92 61 183 100 0 0 chrX 16365542 16365572 -146234358 + (T)n Simple_repeat Simple_repeat 1 30 0 702 130 0 0 chrX 16365572 16365672 -146234258 - HY3 scRNA scRNA -1 100 1 309 118 0 20 chrX 16365672 16365723 -146234207 - LTR41 LTR ERVL -700 73 24 443 277 6 31 chrX 16365737 16365896 -146234034 + LTR33 LTR ERVL 367 521 0 1971 124 0 7 chrX 16365974 16366287 -146233643 + AluSx SINE Alu 1 311 0 851 127 24 0 chrX 16366351 16366477 -146233453 - FLAM_C SINE Alu 0 133 5 2533 126 31 87 chrX 16366481 16366837 -146233093 - MSTC LTR MaLR -2 426 99 737 157 0 25 chrX 16366837 16366948 -146232982 + AluJo/FLAM SINE Alu 1 110 -192 1845 149 33 0 chrX 16366948 16367250 -146232680 - AluJo SINE Alu 0 312 1 2533 126 31 87 chrX 16367259 16367353 -146232577 - MSTC LTR MaLR -329 99 1 2215 99 0 0 chrX 16367855 16368158 -146231772 + AluSx SINE Alu 1 303 -9 271 363 38 42 chrX 16368439 16368676 -146231254 - L2 LINE L2 -508 2806 2571 354 314 29 14 chrX 16368805 16368945 -146230985 - MER87 LTR ERV1 0 541 400 2084 118 14 0 chrX 16369017 16369314 -146230616 + AluSx SINE Alu 1 301 -11 1981 112 7 10 chrX 16369553 16369847 -146230083 - AluSq SINE Alu -20 293 1 1149 182 0 0 chrX 16370009 16370212 -146229718 + AluJo SINE Alu 1 203 -109 2393 64 0 10 chrX 16370431 16370729 -146229201 + AluSx SINE Alu 4 298 -14 1168 241 28 4 chrX 16370945 16371194 -146228736 - MIR SINE MIR 0 262 8 318 67 50 50 chrX 16372191 16372209 -146227721 + MSTB LTR MaLR 367 384 -42 2137 122 0 0 chrX 16372209 16372521 -146227409 - AluSx SINE Alu 0 312 1 318 67 50 50 chrX 16372521 16372562 -146227368 + MSTB LTR MaLR 383 426 0 1243 162 76 0 chrX 16372566 16372776 -146227154 + MLT1C LTR MaLR 242 467 0 1904 146 0 7 chrX 16373045 16373347 -146226583 + AluSx SINE Alu 1 300 -12 801 102 0 0 chrX 16373468 16373576 -146226354 + AluSg/x SINE Alu 194 301 -11 1977 174 40 19 chrX 16373662 16374022 -146225908 - MLT1B LTR MaLR 0 390 20 1571 174 0 14 chrX 16374022 16374310 -146225620 + AluJo SINE Alu 1 284 -28 1977 174 40 19 chrX 16374310 16374322 -146225608 - MLT1B LTR MaLR -370 20 10 2011 104 0 14 chrX 16374322 16374634 -146225296 + AluSx SINE Alu 1 308 0 3362 86 13 20 chrX 16374775 16374840 -146225090 - MLT2A2 LTR ERVL 0 453 389 2279 92 0 3 chrX 16374840 16375146 -146224784 + AluSx SINE Alu 1 305 -7 3362 86 13 20 chrX 16375146 16375536 -146224394 - MLT2A2 LTR ERVL -64 389 1 1752 147 52 0 chrX 16375764 16376050 -146223880 - AluJb SINE Alu -11 301 1 295 302 12 12 chrX 16376580 16376666 -146223264 - MIR SINE MIR -75 133 48 518 133 0 0 chrX 16376817 16376892 -146223038 + AluJ/FLAM SINE Alu 2 76 -236 2138 104 0 19 chrX 16376997 16377338 -146222592 + AluSx SINE Alu 1 312 0 1022 130 12 0 chrX 16377339 16377500 -146222430 + AluSg/x SINE Alu 135 297 -15 513 248 220 6 chrX 16377923 16378222 -146221708 - LTR16A LTR ERVL 0 450 16 1027 147 0 0 chrX 16378502 16378658 -146221272 - FRAM SINE Alu -23 153 1 1479 183 35 11 chrX 16378668 16378952 -146220978 - AluJb SINE Alu -21 291 1 2119 99 14 0 chrX 16378960 16379253 -146220677 - AluSx SINE Alu -10 302 6 2007 107 43 13 chrX 16379266 16379565 -146220365 - AluSg SINE Alu -2 308 1 349 227 33 73 chrX 16379606 16379756 -146220174 - L1ME4a LINE L1 -2 6119 5976 278 303 0 0 chrX 16379819 16379895 -146220035 + MIR SINE MIR 14 89 -173 231 36 0 0 chrX 16379896 16379924 -146220006 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 807 123 14 36 chrX 16379937 16380075 -146219855 + AluJo SINE Alu 1 135 -177 190 338 29 0 chrX 16380163 16380231 -146219699 - L2 LINE L2 -57 3256 3187 258 241 117 97 chrX 16380232 16380377 -146219553 + MIR SINE MIR 102 249 -13 2205 49 7 25 chrX 16380471 16380796 -146219134 + AluY SINE Alu 1 320 0 233 293 101 0 chrX 16380930 16381029 -146218901 + LTR33A LTR ERVL 300 408 -115 874 49 0 0 chrX 16381066 16381168 -146218762 + AluSq/x SINE Alu 35 136 -177 2033 117 17 3 chrX 16381168 16381468 -146218462 + AluSx SINE Alu 1 304 -8 311 290 134 18 chrX 16381585 16381809 -146218121 + L3b LINE CR1 1135 1384 -199 1036 197 14 40 chrX 16381845 16382068 -146217862 + MER20 DNA MER1_type 3 219 0 913 150 42 31 chrX 16382154 16382347 -146217583 - L1MB7 LINE L1 0 6184 5990 239 164 213 0 chrX 16382567 16382628 -146217302 - MER5A DNA MER1_type -107 82 9 356 65 32 16 chrX 16382719 16382781 -146217149 - L1MB8 LINE L1 -6 6172 6110 479 103 90 26 chrX 16382783 16382861 -146217069 + AluJ/FRAM SINE Alu 216 298 -14 522 124 48 29 chrX 16382863 16382968 -146216962 - L1MB7 LINE L1 -59 6125 6019 1850 114 3 56 chrX 16382968 16383274 -146216656 + AluSx SINE Alu 1 290 -22 1233 136 0 0 chrX 16383279 16383523 -146216407 + AluJb SINE Alu 129 372 0 2039 145 3 20 chrX 16383529 16383650 -146216280 - L1MB7 LINE L1 -145 6039 5919 349 294 47 39 chrX 16383650 16383905 -146216025 - L1PA10 LINE L1 -243 5925 5669 2005 116 14 0 chrX 16384042 16384334 -146215596 - AluSx SINE Alu -16 296 1 2070 161 27 47 chrX 16384621 16384674 -146215256 + MSTD LTR MaLR 1 54 -342 1557 109 130 43 chrX 16384674 16384950 -146214980 + AluJo SINE Alu 1 300 -12 2070 161 27 47 chrX 16384950 16385300 -146214630 + MSTD LTR MaLR 54 396 0 217 306 14 28 chrX 16385538 16385610 -146214320 + L2 LINE L2 3201 3271 -1 21 0 0 0 chrX 16385645 16385666 -146214264 + AT_rich Low_complexity Low_complexity 1 21 0 1743 225 151 52 chrX 16385842 16385902 -146214028 - MLT1G1 LTR MaLR 0 595 542 2443 55 0 3 chrX 16385902 16386210 -146213720 - AluY SINE Alu -4 307 1 1743 225 151 52 chrX 16386210 16386631 -146213299 - MLT1G1 LTR MaLR -53 542 53 840 113 0 30 chrX 16386631 16386764 -146213166 + FLAM_C SINE Alu 1 129 -4 1743 225 151 52 chrX 16386764 16386819 -146213111 - MLT1G1 LTR MaLR -542 53 5 271 221 16 10 chrX 16387319 16387415 -146212515 - L1MC4 LINE L1 -31 8011 7828 26 30 0 0 chrX 16387561 16387594 -146212336 + AT_rich Low_complexity Low_complexity 1 33 0 2244 112 0 0 chrX 16387689 16388001 -146211929 - AluSx SINE Alu 0 312 1 478 151 14 0 chrX 16388110 16388183 -146211747 + AluJb SINE Alu 49 122 -190 241 137 20 0 chrX 16388211 16388262 -146211668 + LTR66 LTR ERVL 388 439 -171 258 289 0 0 chrX 16388270 16388360 -146211570 + L1MC4 LINE L1 6614 6703 -1339 339 213 0 0 chrX 16388363 16388438 -146211492 + (TA)n Simple_repeat Simple_repeat 2 76 0 243 0 0 0 chrX 16388438 16388465 -146211465 + (CA)n Simple_repeat Simple_repeat 2 28 0 974 162 0 28 chrX 16388465 16388644 -146211286 + AluSg/x SINE Alu 129 302 -8 196 250 188 0 chrX 16388686 16388766 -146211164 + MIR SINE MIR 156 250 -12 279 203 224 37 chrX 16388775 16388892 -146211038 + MIR SINE MIR 12 148 -103 1903 139 32 16 chrX 16388901 16389210 -146210720 - MLT1F1 LTR MaLR 0 567 254 997 153 5 26 chrX 16389221 16389411 -146210519 - AluJo SINE Alu -10 302 117 2068 119 3 10 chrX 16389411 16389723 -146210207 - AluSx SINE Alu -2 310 1 865 171 48 64 chrX 16389723 16389910 -146210020 - MLT1F1 LTR MaLR -311 256 73 806 208 104 91 chrX 16390323 16390443 -146209487 - MIR SINE MIR 0 262 136 2156 96 0 3 chrX 16390443 16390734 -146209196 - AluSx SINE Alu -22 290 1 806 208 104 91 chrX 16390734 16390844 -146209086 - MIR SINE MIR -126 136 29 2003 118 28 0 chrX 16391148 16391437 -146208493 + AluSx SINE Alu 1 297 -15 2368 77 0 0 chrX 16391599 16391896 -146208034 - AluSq SINE Alu -16 297 1 342 310 8 76 chrX 16392046 16392251 -146207679 - MLT1L LTR MaLR -116 499 279 506 157 0 0 chrX 16392468 16392557 -146207373 + MER53 DNA DNA 5 93 -96 574 75 12 0 chrX 16392733 16392813 -146207117 + MER53 DNA DNA 109 189 0 2111 92 7 7 chrX 16392913 16393205 -146206725 - AluSx SINE Alu -19 293 2 24 0 0 0 chrX 16393505 16393529 -146206401 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 16394083 16394112 -146205818 + AT_rich Low_complexity Low_complexity 1 29 0 222 37 0 0 chrX 16394300 16394327 -146205603 + (CTG)n Simple_repeat Simple_repeat 3 29 0 251 140 20 0 chrX 16394425 16394475 -146205455 + (TG)n Simple_repeat Simple_repeat 1 51 0 180 184 66 92 chrX 16397753 16397829 -146202101 - L3 LINE CR1 -1067 510 437 647 281 78 29 chrX 16398942 16399184 -146200746 - MIR SINE MIR -1 261 8 1560 183 3 11 chrX 16399221 16399506 -146200424 - AluJb SINE Alu -21 291 9 2167 108 0 3 chrX 16400031 16400317 -146199613 - AluSx SINE Alu -23 289 5 2190 97 6 19 chrX 16400427 16400738 -146199192 - AluSx SINE Alu -4 308 2 2312 56 3 17 chrX 16400991 16401278 -146198652 - AluY SINE Alu -5 306 24 565 212 14 27 chrX 16401290 16401436 -146198494 - L1MB8 LINE L1 0 6178 6035 1838 131 0 77 chrX 16401496 16401664 -146198266 - AluJb SINE Alu -23 289 154 2379 107 3 0 chrX 16401664 16401974 -146197956 - AluSx SINE Alu -1 311 1 1838 131 0 77 chrX 16401974 16402118 -146197812 - AluJb SINE Alu -158 154 1 1770 168 0 29 chrX 16402180 16402490 -146197440 - AluJb SINE Alu -11 301 1 2114 143 0 3 chrX 16402521 16402835 -146197095 + AluSq SINE Alu 1 313 0 2257 81 10 3 chrX 16402846 16403141 -146196789 + AluSp SINE Alu 1 297 -16 21 36 0 0 chrX 16404127 16404155 -146195775 + AT_rich Low_complexity Low_complexity 1 28 0 2117 128 0 0 chrX 16404222 16404519 -146195411 + AluSx SINE Alu 1 297 -15 21 57 0 0 chrX 16404968 16405003 -146194927 + AT_rich Low_complexity Low_complexity 1 35 0 277 200 100 50 chrX 16405039 16405139 -146194791 - L2 LINE L2 -1 3312 3208 2051 120 0 0 chrX 16405156 16405430 -146194500 - AluSx SINE Alu -25 287 14 2736 88 31 149 chrX 16405493 16405982 -146193948 - Tigger2 DNA MER2_type -3 2715 1 355 266 119 21 chrX 16406028 16406171 -146193759 - L2 LINE L2 -262 3051 2895 2045 130 13 7 chrX 16406194 16406502 -146193428 + AluJb SINE Alu 1 310 -2 2374 89 0 0 chrX 16407637 16407940 -146191990 - AluSg SINE Alu -7 303 1 2452 73 0 3 chrX 16408085 16408386 -146191544 + AluSg SINE Alu 1 300 -10 409 238 158 0 chrX 16408496 16408597 -146191333 + L2 LINE L2 3182 3298 -15 285 29 0 0 chrX 16408971 16409005 -146190925 + (TG)n Simple_repeat Simple_repeat 2 35 0 3691 152 48 21 chrX 16409022 16409134 -146190796 - Tigger1 DNA MER2_type 0 2418 2311 2140 112 10 0 chrX 16409134 16409430 -146190500 + AluSx SINE Alu 1 299 -13 3691 152 48 21 chrX 16409430 16409981 -146189949 - Tigger1 DNA MER2_type -107 2311 1737 372 197 30 0 chrX 16409968 16410034 -146189896 - AluJ/FLAM SINE Alu -234 68 1 * 1804 127 4 11 chrX 16410040 16410308 -146189622 - AluSq SINE Alu -6 307 42 942 235 76 73 chrX 16410310 16410396 -146189534 - L1MCc LINE L1 -5152 1271 1187 2105 204 114 32 chrX 16410396 16410710 -146189220 - MER87 LTR ERV1 0 541 169 2191 116 3 0 chrX 16410710 16411002 -146188928 + AluJb SINE Alu 1 293 -19 2105 204 114 32 chrX 16411002 16411187 -146188743 - MER87 LTR ERV1 -372 169 1 942 235 76 73 chrX 16411187 16411496 -146188434 - L1MCc LINE L1 -5236 1187 875 2292 57 0 4 chrX 16412044 16412369 -146187561 - AluY SINE Alu 0 325 2 420 297 87 55 chrX 16412651 16412915 -146187015 - L1MDa LINE L1 -745 1745 1441 1314 77 35 0 chrX 16412926 16413096 -146186834 - L1PA14 LINE L1 -1 6160 5985 1773 75 18 0 chrX 16413142 16413370 -146186560 - L1PA14 LINE L1 -1 6160 5929 601 144 44 0 chrX 16413389 16413479 -146186451 - AluJ/FLAM SINE Alu -217 95 2 23 0 0 0 chrX 16413584 16413607 -146186323 + AT_rich Low_complexity Low_complexity 1 23 0 268 289 85 24 chrX 16413699 16413974 -146185956 - L1MDa LINE L1 -4862 1257 949 195 227 0 0 chrX 16414004 16414070 -146185860 + (TA)n Simple_repeat Simple_repeat 2 67 0 809 172 0 8 chrX 16414071 16414193 -146185737 - FLAM_C SINE Alu -12 121 1 350 363 120 21 chrX 16414465 16414653 -146185277 - L1MDa LINE L1 -5470 649 481 2409 93 0 0 chrX 16414653 16414954 -146184976 - AluSx SINE Alu -11 301 1 350 363 120 21 chrX 16414954 16415098 -146184832 - L1MDa LINE L1 -5638 481 284 1987 126 87 36 chrX 16415101 16415458 -146184472 + THE1C LTR MaLR 1 375 0 2020 70 37 60 chrX 16415658 16415956 -146183974 + AluSq SINE Alu 21 311 -2 219 304 108 6 chrX 16416361 16416519 -146183411 + L2 LINE L2 1367 1540 -1774 964 137 63 47 chrX 16416642 16416832 -146183098 + MER20 DNA MER1_type 22 214 -5 420 287 85 44 chrX 16416915 16417256 -146182674 + L2 LINE L2 1707 2061 -1253 604 152 0 0 chrX 16417417 16417509 -146182421 - AluJ SINE Alu -10 302 211 759 154 8 8 chrX 16417510 16417627 -146182303 - AluJ SINE Alu -184 118 2 257 309 73 24 chrX 16417637 16417760 -146182170 + L2 LINE L2 2253 2381 -933 314 295 72 53 chrX 16417819 16418026 -146181904 + L2 LINE L2 2669 2879 -435 2345 90 0 16 chrX 16418419 16418731 -146181199 - AluSg1 SINE Alu -2 307 1 2374 81 0 0 chrX 16419371 16419669 -146180261 - AluSc SINE Alu -11 298 1 371 311 10 0 chrX 16419854 16419957 -146179973 + MIR SINE MIR 153 256 -6 2278 99 0 0 chrX 16420159 16420451 -146179479 - AluSq SINE Alu -21 292 1 222 227 121 15 chrX 16420545 16420611 -146179319 - MIR SINE MIR -72 190 118 2302 96 3 0 chrX 16420765 16421067 -146178863 - AluSp SINE Alu -10 303 1 1917 131 3 7 chrX 16421126 16421416 -146178514 - AluJb SINE Alu -23 289 1 1639 108 0 0 chrX 16422002 16422216 -146177714 - AluSg/x SINE Alu -12 300 87 2300 98 0 3 chrX 16422396 16422701 -146177229 - AluSg SINE Alu -1 309 6 2288 114 0 0 chrX 16423804 16424111 -146175819 - AluSg SINE Alu -3 307 1 1764 125 4 0 chrX 16424136 16424384 -146175546 - AluSx SINE Alu -15 297 49 803 159 179 0 chrX 16424467 16424612 -146175318 - AluSg/x SINE Alu -10 300 130 231 231 0 0 chrX 16425410 16425449 -146174481 - Tigger3(Golem) DNA MER2_type -2989 40 2 2239 93 36 0 chrX 16425612 16425914 -146174016 - AluSq SINE Alu 0 313 1 260 227 216 10 chrX 16426868 16426965 -146172965 - L2 LINE L2 -13 3300 3184 207 266 47 0 chrX 16426988 16427052 -146172878 - MIR SINE MIR -10 252 186 288 207 35 58 chrX 16427090 16427177 -146172753 + HsTC2 DNA Tc2 1 85 -1813 195 69 0 0 chrX 16427181 16427210 -146172720 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2108 115 0 0 chrX 16427212 16427490 -146172440 - AluSg SINE Alu -32 278 1 2553 71 0 7 chrX 16427490 16427799 -146172131 - AluSq SINE Alu -5 308 1 266 200 229 0 chrX 16427935 16428040 -146171890 + MER3 DNA MER1_type 28 156 -53 1376 137 0 89 chrX 16428053 16428323 -146171607 + AluJb SINE Alu 63 308 -4 871 163 0 0 chrX 16428325 16428454 -146171476 - MER3 DNA MER1_type -80 129 1 734 105 92 92 chrX 16428808 16428850 -146171080 - MSTA LTR MaLR 0 428 387 2185 100 7 19 chrX 16428850 16429160 -146170770 + AluSx SINE Alu 1 306 -6 734 105 92 92 chrX 16429160 16429269 -146170661 - MSTA LTR MaLR -40 388 277 1388 102 0 0 chrX 16429271 16429448 -146170482 - AluSc SINE Alu -1 308 132 2020 86 9 93 chrX 16429448 16429772 -146170158 - AluSc SINE Alu -12 297 1 1477 154 47 18 chrX 16429772 16430051 -146169879 - MSTA LTR MaLR -141 287 1 1790 156 3 10 chrX 16430059 16430377 -146169553 - AluJb SINE Alu 0 316 1 637 236 44 28 chrX 16430645 16430827 -146169103 - L1ME LINE L1 -362 5800 5616 1600 92 40 31 chrX 16431548 16431775 -146168155 - MER30 DNA MER1_type -1 229 1 1222 149 39 0 chrX 16431907 16432088 -146167842 + MER5A DNA MER1_type 2 189 0 2517 87 0 0 chrX 16432318 16432630 -146167300 + AluSx SINE Alu 1 312 0 219 36 0 0 chrX 16433590 16433618 -146166312 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 374 276 36 76 chrX 16433650 16433821 -146166109 - L1ME LINE L1 -2264 5544 5389 810 190 0 29 chrX 16433821 16433958 -146165972 - FLAM_C SINE Alu 0 133 1 374 276 36 76 chrX 16433958 16434087 -146165843 - L1ME LINE L1 -2419 5389 5256 733 211 25 12 chrX 16434290 16434451 -146165479 + MER97a DNA MER1_type? 1 163 -731 1128 270 148 44 chrX 16434489 16434960 -146164970 - L1ME LINE L1 -954 5192 4771 2200 84 0 14 chrX 16434960 16435268 -146164662 + AluSx SINE Alu 2 305 0 1128 270 148 44 chrX 16435268 16435654 -146164276 - L1ME LINE L1 -1375 4771 4231 1974 124 17 7 chrX 16436091 16436389 -146163541 - AluJo SINE Alu -11 301 1 418 232 0 0 chrX 16436606 16436688 -146163242 + LTR32 LTR ERVL 7 88 -383 * 2373 167 19 30 chrX 16436668 16437130 -146162800 + LTR32 LTR ERVL 15 471 0 2359 104 0 0 chrX 16438633 16438942 -146160988 + AluSx SINE Alu 1 309 -3 2487 73 3 0 chrX 16438943 16439243 -146160687 + AluSp SINE Alu 1 301 -12 2300 113 3 0 chrX 16439631 16439972 -146159958 + AluSx SINE Alu 1 342 0 1993 252 121 28 chrX 16440121 16440693 -146159237 - MLT2E LTR ERVL -3 625 1 1656 162 3 46 chrX 16440748 16440760 -146159170 - AluJo SINE Alu 0 501 490 1424 67 0 0 chrX 16440760 16440939 -146158991 - L1MA3 LINE L1 0 6305 6127 1656 162 3 46 chrX 16440939 16441262 -146158668 - AluJo SINE Alu -11 490 1 2015 144 0 3 chrX 16441304 16441617 -146158313 - AluSx SINE Alu 0 312 1 683 61 105 0 chrX 16441622 16441731 -146158199 - L1MA3 LINE L1 -164 6139 6015 2231 112 0 10 chrX 16442532 16442835 -146157095 - AluSx SINE Alu -12 300 1 449 284 24 60 chrX 16442979 16443230 -146156700 + MLT1J LTR MaLR 37 313 -198 764 144 0 8 chrX 16443280 16443398 -146156532 - AluSg/x SINE Alu -4 308 192 1766 104 119 4 chrX 16443473 16443742 -146156188 - AluSq SINE Alu -13 300 1 2364 93 7 7 chrX 16444525 16444835 -146155095 - AluSx SINE Alu -2 310 1 1859 162 3 10 chrX 16444859 16445173 -146154757 - AluJo SINE Alu 0 312 1 1469 245 53 80 chrX 16445703 16445785 -146154145 - L1M4c LINE L1 -3660 3297 3214 1740 176 0 16 chrX 16445785 16446092 -146153838 - AluJb SINE Alu -9 303 2 1469 245 53 80 chrX 16446092 16446351 -146153579 - L1M4c LINE L1 -3743 3214 2949 2388 75 0 10 chrX 16446351 16446644 -146153286 - AluSc SINE Alu -19 290 1 1759 135 87 14 chrX 16446654 16446943 -146152987 - AluSx SINE Alu -2 310 1 1469 245 53 80 chrX 16446943 16447853 -146152077 - L1M4c LINE L1 -4017 2940 2132 2313 108 0 13 chrX 16447853 16448167 -146151763 - AluSx SINE Alu -2 310 1 1469 245 53 80 chrX 16448167 16448271 -146151659 - L1M4c LINE L1 -4825 2132 2027 2165 113 0 16 chrX 16448283 16448592 -146151338 - AluSx SINE Alu -8 304 1 835 152 0 23 chrX 16448597 16448729 -146151201 - FLAM_C SINE Alu -14 129 1 857 182 75 157 chrX 16448729 16448887 -146151043 - L1M4c LINE L1 -4899 2060 1891 2525 71 0 0 chrX 16448887 16449195 -146150735 - AluY SINE Alu -3 308 1 857 182 75 157 chrX 16449195 16449267 -146150663 - L1M4c LINE L1 -5068 1891 1815 246 182 36 0 chrX 16449267 16449322 -146150608 - MLT2B2 LTR ERVL 0 515 459 857 182 75 157 chrX 16449322 16449476 -146150454 - L1M4c LINE L1 -5144 1815 1657 * 3452 139 18 27 chrX 16449471 16450068 -146149862 - L1MC3 LINE L1 0 7785 7194 299 267 11 11 chrX 16450071 16450161 -146149769 - MLT1F1 LTR MaLR -442 125 36 804 147 95 44 chrX 16450162 16450402 -146149528 - L1MC3 LINE L1 -688 7097 6860 2309 106 0 3 chrX 16450402 16450735 -146149195 - AluSx SINE Alu 0 332 1 832 136 0 73 chrX 16450787 16450897 -146149033 - L1MC3 LINE L1 -923 6862 6767 1799 128 14 38 chrX 16450897 16451238 -146148692 - AluJb SINE Alu 0 334 1 832 136 0 73 chrX 16451238 16451303 -146148627 - L1MC3 LINE L1 -1018 6767 6699 301 130 17 2 chrX 16451298 16451362 -146148568 - L1M4c LINE L1 -5180 1679 1612 * 819 226 153 95 chrX 16451362 16451827 -146148103 - L1M4c LINE L1 -6358 501 10 309 330 165 0 chrX 16452735 16452911 -146147019 - MIR SINE MIR 0 262 58 2234 88 3 17 chrX 16453001 16453296 -146146634 - AluSg SINE Alu -19 291 1 2058 116 0 24 chrX 16453893 16454186 -146145744 - AluSx SINE Alu -18 294 9 881 199 5 53 chrX 16454339 16454545 -146145385 - AluJb SINE Alu -26 286 91 29 28 0 0 chrX 16454663 16454699 -146145231 + AT_rich Low_complexity Low_complexity 1 36 0 562 282 19 5 chrX 16455086 16455292 -146144638 - LTR54 LTR ERV1 -9 501 293 445 160 64 80 chrX 16455305 16455430 -146144500 - LTR54 LTR ERV1 -326 184 62 362 384 68 17 chrX 16455659 16455896 -146144034 + L2 LINE L2 2836 3084 -188 191 156 0 0 chrX 16456682 16456714 -146143216 + L2 LINE L2 3274 3305 -8 202 273 0 36 chrX 16456770 16456825 -146143105 - MIR SINE MIR -58 150 98 225 283 61 91 chrX 16456826 16456888 -146143042 + L3 LINE CR1 1351 1410 -167 1582 185 28 3 chrX 16456888 16457175 -146142755 - AluJo SINE Alu -18 294 1 225 283 61 91 chrX 16457175 16457211 -146142719 + L3 LINE CR1 1410 1446 -131 2241 101 0 0 chrX 16457212 16457508 -146142422 + AluSx SINE Alu 3 298 -14 980 213 13 13 chrX 16458010 16458235 -146141695 + MER21B LTR ERV1 81 305 -558 1849 130 116 44 chrX 16458273 16458703 -146141227 + MER4D LTR ERV1 1 461 -442 722 105 0 19 chrX 16458703 16458808 -146141122 - AluSx SINE Alu -22 288 186 1497 92 0 0 chrX 16458835 16459031 -146140899 - AluSx SINE Alu -110 202 7 1614 92 76 62 chrX 16459037 16459341 -146140589 + MER4E LTR ERV1 346 653 -126 771 118 8 8 chrX 16459344 16459463 -146140467 + AluJb SINE Alu 1 119 -193 807 85 20 72 chrX 16459470 16459623 -146140307 + MER4E LTR ERV1 624 768 -11 1182 183 108 115 chrX 16459635 16460034 -146139896 + MER21B LTR ERV1 354 846 -85 235 341 37 0 chrX 16460872 16460954 -146138976 - MIR3 SINE MIR 0 208 124 1098 252 81 14 chrX 16461443 16461888 -146138042 - L1MC/D LINE L1 -2016 5792 5318 518 300 120 64 chrX 16462011 16462964 -146136966 + L2 LINE L2 2292 3310 -3 264 402 53 11 chrX 16462978 16463167 -146136763 - L3 LINE CR1 -1345 232 36 1622 159 31 31 chrX 16463503 16463792 -146136138 - AluJb SINE Alu -23 289 1 2082 121 0 34 chrX 16463812 16464135 -146135795 - AluSx SINE Alu 0 312 1 218 242 194 0 chrX 16465107 16465169 -146134761 - L3 LINE CR1 -11 1566 1493 766 308 133 33 chrX 16465203 16465632 -146134298 + L2 LINE L2 2842 3313 0 2872 163 61 94 chrX 16465664 16466566 -146133364 - MER4D LTR ERV1 -11 892 21 1311 106 0 21 chrX 16466568 16466756 -146133174 - AluSg/x SINE Alu -11 301 118 457 324 158 15 chrX 16466773 16467045 -146132885 - L3 LINE CR1 -209 1368 1058 219 36 0 0 chrX 16467335 16467363 -146132567 + (TTGTG)n Simple_repeat Simple_repeat 2 29 0 180 250 0 0 chrX 16467368 16467416 -146132514 + CT-rich Low_complexity Low_complexity 2 49 0 1162 147 35 100 chrX 16467416 16467675 -146132255 - AluJb SINE Alu -39 273 32 358 174 58 12 chrX 16467880 16467966 -146131964 - MLT1E2 LTR MaLR 0 626 537 421 226 58 70 chrX 16468209 16468354 -146131576 - L1M4 LINE L1 -3235 2911 2769 1840 147 55 3 chrX 16468354 16468647 -146131283 - AluSx SINE Alu -4 308 1 421 226 58 70 chrX 16468647 16468758 -146131172 - L1M4 LINE L1 -3377 2769 2658 2408 58 0 29 chrX 16468934 16469245 -146130685 - AluY SINE Alu -9 302 1 425 358 37 59 chrX 16469317 16469638 -146130292 - L1MEd LINE L1 -5327 792 479 1066 109 25 35 chrX 16469727 16469929 -146130001 - L1MA4 LINE L1 -1 6299 6100 1865 166 0 7 chrX 16470416 16470717 -146129213 - AluSx SINE Alu -13 299 1 2164 132 0 3 chrX 16470739 16471050 -146128880 - AluSq SINE Alu -3 310 1 2316 102 7 0 chrX 16471122 16471425 -146128505 - AluSx SINE Alu -7 305 1 460 325 158 8 chrX 16471670 16471910 -146128020 + L2 LINE L2 2997 3272 0 626 221 115 67 chrX 16472005 16472258 -146127672 - L2 LINE L2 -411 2903 2639 567 263 75 74 chrX 16472490 16472759 -146127171 - L1M4 LINE L1 -1480 4666 4399 1743 196 0 0 chrX 16472759 16473060 -146126870 - AluJb SINE Alu -11 301 1 567 263 75 74 chrX 16473060 16473314 -146126616 - L1M4 LINE L1 -1747 4399 4147 1776 158 0 38 chrX 16473314 16473630 -146126300 - AluJb SINE Alu -8 304 1 567 263 75 74 chrX 16473630 16473683 -146126247 - L1M4 LINE L1 -1999 4147 4096 1306 179 47 47 chrX 16473683 16473980 -146125950 - AluJo SINE Alu -13 299 3 567 263 75 74 chrX 16473980 16474067 -146125863 - L1M4 LINE L1 -2050 4096 4000 293 275 50 17 chrX 16474070 16474190 -146125740 - L1ME LINE L1 -504 5617 5494 2539 33 3 10 chrX 16474226 16474530 -146125400 + AluY SINE Alu 1 302 -9 5354 186 91 38 chrX 16474637 16476446 -146123484 - L1MC3 LINE L1 -1 8039 6108 22 0 0 0 chrX 16476862 16476884 -146123046 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chrX 16477129 16477169 -146122761 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1286 107 56 0 chrX 16477169 16477347 -146122583 - AluSg/x SINE Alu -31 279 92 603 185 67 15 chrX 16477441 16477576 -146122354 + MER104 DNA Tc2 38 179 -1 2087 98 14 0 chrX 16478392 16478668 -146121262 + AluSc SINE Alu 3 282 -27 333 0 0 0 chrX 16478668 16478705 -146121225 + (CA)n Simple_repeat Simple_repeat 2 38 0 407 109 47 0 chrX 16478705 16478769 -146121161 + AluSc SINE Alu 216 282 -27 465 19 0 0 chrX 16478769 16478823 -146121107 + (CA)n Simple_repeat Simple_repeat 2 55 0 968 123 0 20 chrX 16479446 16479592 -146120338 + FLAM_C SINE Alu 1 143 0 219 36 0 0 chrX 16479720 16479748 -146120182 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2147 107 4 0 chrX 16479750 16480031 -146119899 - AluSx SINE Alu -30 282 1 1743 121 153 0 chrX 16480517 16480830 -146119100 - MER46B DNA MER2_type 0 236 1 1780 156 79 24 chrX 16480986 16481314 -146118616 + MER7A DNA MER2_type 3 346 0 35 0 0 0 chrX 16482237 16482272 -146117658 + AT_rich Low_complexity Low_complexity 1 35 0 196 180 66 0 chrX 16482581 16482642 -146117288 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 25 31 0 0 chrX 16482760 16482792 -146117138 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 16483872 16483900 -146116030 + AT_rich Low_complexity Low_complexity 1 28 0 2294 107 0 0 chrX 16484001 16484301 -146115629 + AluSq SINE Alu 1 300 -13 2143 123 7 3 chrX 16484366 16484676 -146115254 - AluSx SINE Alu -1 311 1 468 289 188 15 chrX 16485288 16485485 -146114445 - MIR SINE MIR 0 262 32 339 85 0 0 chrX 16485532 16485579 -146114351 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1880 113 38 11 chrX 16485591 16485857 -146114073 - AluSx SINE Alu -39 273 1 826 106 0 18 chrX 16486130 16486243 -146113687 - FLAM_C SINE Alu -13 130 20 2004 115 10 7 chrX 16486317 16486612 -146113318 - AluSq SINE Alu -17 296 1 1947 81 11 11 chrX 16487326 16487587 -146112343 + AluSx SINE Alu 28 288 -24 21 71 0 0 chrX 16487708 16487750 -146112180 + AT_rich Low_complexity Low_complexity 1 42 0 216 373 69 10 chrX 16487814 16487916 -146112014 - L2 LINE L2 -7 3306 3199 2358 78 13 3 chrX 16487970 16488276 -146111654 - AluSc SINE Alu 0 309 1 844 205 138 0 chrX 16488737 16488932 -146110998 + MER58A DNA MER1_type 3 224 0 402 300 84 26 chrX 16489437 16489627 -146110303 - MIR SINE MIR -3 259 59 4554 170 48 40 chrX 16489663 16490316 -146109614 - L1MB5 LINE L1 -6 6168 5521 186 43 0 0 chrX 16490316 16490339 -146109591 + (TCC)n Simple_repeat Simple_repeat 2 24 0 1855 131 40 7 chrX 16490340 16490615 -146109315 - AluSx SINE Alu -28 284 1 4554 170 48 40 chrX 16490615 16491135 -146108795 - L1MB5 LINE L1 -653 5521 5006 807 104 8 15 chrX 16491135 16491269 -146108661 - L1PB4 LINE L1 -3 6153 6021 4554 170 48 40 chrX 16491269 16491864 -146108066 - L1MB5 LINE L1 -1168 5006 4393 289 109 0 0 chrX 16491865 16491911 -146108019 - Alu SINE Alu -8 293 248 2207 136 0 0 chrX 16491912 16492221 -146107709 - AluSx SINE Alu -3 309 1 328 214 0 127 chrX 16492244 16492370 -146107560 - L1MB5 LINE L1 -1716 4430 4321 2229 103 13 13 chrX 16492370 16492672 -146107258 - AluSx SINE Alu -10 302 1 1683 204 21 3 chrX 16492683 16493060 -146106870 - L1MB4 LINE L1 0 6180 5797 262 205 24 48 chrX 16493169 16493252 -146106678 - L1MB4 LINE L1 -2100 4046 3966 1038 151 26 5 chrX 16493292 16493484 -146106446 - L1M3 LINE L1 -396 5784 5589 1447 203 17 17 chrX 16493485 16493845 -146106085 - L1MB5 LINE L1 -1819 4327 3968 331 303 72 20 chrX 16493889 16494084 -146105846 - L1M4 LINE L1 -6332 210 6 1433 228 35 2 chrX 16494089 16494493 -146105437 - L1MCa LINE L1 -901 5525 5109 1111 176 0 109 chrX 16494493 16494689 -146105241 - AluJo SINE Alu -6 306 143 2011 133 7 3 chrX 16494689 16494975 -146104955 - AluSx SINE Alu -25 287 1 1111 176 0 109 chrX 16494975 16495034 -146104896 - AluJo SINE Alu -169 143 79 6762 227 78 50 chrX 16495034 16495321 -146104609 - L1MCa LINE L1 -1313 5113 4835 2318 96 0 0 chrX 16495321 16495623 -146104307 - AluSx SINE Alu -10 302 1 6762 227 78 50 chrX 16495623 16496356 -146103574 - L1MCa LINE L1 -1591 4835 4124 2519 59 3 0 chrX 16496356 16496659 -146103271 - AluSp SINE Alu -9 304 1 6762 227 78 50 chrX 16496659 16498224 -146101706 - L1MCa LINE L1 -2302 4124 2604 1980 142 0 7 chrX 16498224 16498512 -146101418 - AluJb SINE Alu -26 286 1 6762 227 78 50 chrX 16498512 16499624 -146100306 - L1MCa LINE L1 -3822 2604 1524 2386 64 0 32 chrX 16499624 16499938 -146099992 + AluSc SINE Alu 2 305 -4 6762 227 78 50 chrX 16499938 16501264 -146098666 - L1MCa LINE L1 -4902 1524 91 2823 25 0 0 chrX 16501264 16501582 -146098348 - AluYb8 SINE Alu 0 318 1 6762 227 78 50 chrX 16501582 16501670 -146098260 - L1MCa LINE L1 -6335 91 7 32 95 0 0 chrX 16502605 16502700 -146097230 + AT_rich Low_complexity Low_complexity 1 95 0 254 368 33 20 chrX 16503660 16503812 -146096118 + L2 LINE L2 2852 3005 -267 295 204 258 0 chrX 16503924 16504056 -146095874 + MER104 DNA Tc2 13 178 -2 534 244 57 0 chrX 16504071 16504194 -146095736 + L2 LINE L2 3139 3268 -4 2461 84 3 0 chrX 16506011 16506322 -146093608 - AluSx SINE Alu 0 312 1 700 194 7 7 chrX 16506772 16506911 -146093019 - MER119 DNA MER1_type -216 367 229 2679 211 69 14 chrX 16506913 16508344 -146091586 - L1MD2 LINE L1 -10 6743 5205 * 2837 234 44 18 chrX 16508343 16509307 -146090623 - L1MD2 LINE L1 -2533 4007 3019 4430 188 94 75 chrX 16509337 16509733 -146090197 - L1MD2 LINE L1 -4120 2420 2033 1906 138 0 24 chrX 16509733 16510053 -146089877 - AluJb SINE Alu 0 313 1 4430 188 94 75 chrX 16510053 16510271 -146089659 - L1MD2 LINE L1 -4507 2033 1821 2393 72 0 3 chrX 16510271 16510563 -146089367 - AluSc SINE Alu -18 291 1 4430 188 94 75 chrX 16510563 16511093 -146088837 - L1MD2 LINE L1 -4719 1821 1302 1725 155 40 10 chrX 16511093 16511396 -146088534 - AluJb SINE Alu 0 312 1 4430 188 94 75 chrX 16511396 16511889 -146088041 - L1MD2 LINE L1 -5238 1302 749 735 185 73 15 chrX 16511889 16512094 -146087836 - L1MD2 LINE L1 -6074 466 250 * 937 195 29 24 chrX 16512092 16512338 -146087592 - L1MDb LINE L1 -5307 1236 990 849 248 78 23 chrX 16512778 16513125 -146086805 - L1MDb LINE L1 -6158 382 17 22 56 0 0 chrX 16513194 16513230 -146086700 + AT_rich Low_complexity Low_complexity 1 36 0 253 336 58 29 chrX 16513239 16513343 -146086587 - L2 LINE L2 -33 3239 3133 916 213 20 10 chrX 16513997 16514194 -146085736 - MIR SINE MIR -44 218 20 1886 147 3 28 chrX 16514522 16514842 -146085088 + AluJo SINE Alu 1 312 0 2376 88 3 3 chrX 16515829 16516134 -146083796 - AluSq SINE Alu -4 309 5 223 195 0 0 chrX 16516684 16516725 -146083205 + L2 LINE L2 3262 3302 -11 236 30 30 0 chrX 16516727 16516760 -146083170 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2920 127 44 10 chrX 16517396 16517892 -146082038 - LTR10D LTR ERV1 0 513 1 760 269 170 10 chrX 16520153 16520570 -146079360 - Tigger8 DNA MER2_type -160 506 23 1697 141 11 28 chrX 16521136 16521465 -146078465 - AluJb SINE Alu 0 328 5 2456 75 0 0 chrX 16521548 16521842 -146078088 + AluSg SINE Alu 15 308 -2 192 276 118 70 chrX 16522576 16522848 -146077082 - L2 LINE L2 -673 2641 2357 438 20 0 0 chrX 16523029 16523080 -146076850 + (TG)n Simple_repeat Simple_repeat 2 52 0 1717 96 0 21 chrX 16523080 16523319 -146076611 - AluSx SINE Alu -26 286 53 1754 42 0 5 chrX 16523641 16523857 -146076073 - L1PA5 LINE L1 0 6154 5940 2411 90 0 0 chrX 16523991 16524292 -146075638 - AluSx SINE Alu -11 301 1 616 72 0 0 chrX 16524517 16524600 -146075330 - L1PA7 LINE L1 -1 6153 6071 769 191 121 20 chrX 16524671 16524870 -146075060 - MER20 DNA MER1_type 0 219 1 21 57 0 0 chrX 16525695 16525730 -146074200 + AT_rich Low_complexity Low_complexity 1 35 0 762 274 46 21 chrX 16525958 16526199 -146073731 + MIR SINE MIR 1 247 -15 1758 90 0 0 chrX 16526261 16526483 -146073447 + AluSg/x SINE Alu 85 306 -6 259 61 0 0 chrX 16526493 16526526 -146073404 - U2 snRNA snRNA -155 33 1 1202 168 83 80 chrX 16526730 16527069 -146072861 - MER2 DNA MER2_type -5 340 1 216 0 0 0 chrX 16528776 16528800 -146071130 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2164 90 4 0 chrX 16528804 16529083 -146070847 - AluSg SINE Alu -30 280 1 5897 29 1 0 chrX 16529211 16529899 -146070031 - L1PA3 LINE L1 -2 6153 5465 356 233 41 0 chrX 16530100 16530173 -146069757 - L2 LINE L2 -5 3308 3233 355 275 45 51 chrX 16530327 16530353 -146069577 + HAL1b LINE L1 275 300 -1048 216 0 0 0 chrX 16530353 16530377 -146069553 + (CA)n Simple_repeat Simple_repeat 2 25 0 355 275 45 51 chrX 16530377 16530528 -146069402 + HAL1b LINE L1 300 451 -897 345 316 20 0 chrX 16530669 16530767 -146069163 - MER91B DNA MER1_type -61 129 30 369 320 102 40 chrX 16530783 16531105 -146068825 + HAL1b LINE L1 474 815 -533 362 252 80 20 chrX 16531754 16531905 -146068025 + L1ME4a LINE L1 5503 5662 -459 244 244 142 31 chrX 16532074 16532201 -146067729 + L1ME4a LINE L1 5973 6113 -8 267 79 0 0 chrX 16534103 16534141 -146065789 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chrX 16534416 16534439 -146065491 + AT_rich Low_complexity Low_complexity 1 23 0 502 226 109 54 chrX 16534826 16535065 -146064865 + MER112 DNA MER1_type 8 259 -1 2033 120 0 13 chrX 16535733 16536032 -146063898 - AluJb SINE Alu -17 295 1 2070 141 14 22 chrX 16537095 16537176 -146062754 - MER47A DNA MER2_type -1957 366 286 2079 126 3 14 chrX 16537176 16537469 -146062461 + AluJb SINE Alu 1 290 -22 2070 141 14 22 chrX 16537469 16537755 -146062175 - MER47A DNA MER2_type -2037 286 2 215 278 0 0 chrX 16538221 16538275 -146061655 + CT-rich Low_complexity Low_complexity 1 54 0 1906 146 0 4 chrX 16538290 16538571 -146061359 - AluJo SINE Alu -32 280 1 233 273 11 45 chrX 16540629 16540717 -146059213 - MIR3 SINE MIR -12 196 112 210 281 191 0 chrX 16540914 16541003 -146058927 + MIR SINE MIR 40 145 -117 286 309 0 106 chrX 16541749 16541872 -146058058 - MIR3 SINE MIR -94 114 5 532 288 135 54 chrX 16542325 16542791 -146057139 - L2 LINE L2 -3 3310 2807 812 202 49 9 chrX 16543729 16544014 -146055916 - MER46C DNA MER2_type -12 326 1 22 56 0 0 chrX 16544073 16544109 -146055821 + AT_rich Low_complexity Low_complexity 1 36 0 939 113 0 8 chrX 16545723 16545856 -146054074 + FLAM_C SINE Alu 1 132 -1 24 77 0 0 chrX 16546367 16546419 -146053511 + AT_rich Low_complexity Low_complexity 1 52 0 1068 172 0 0 chrX 16546474 16546637 -146053293 - FAM SINE Alu -12 163 1 24 0 0 0 chrX 16546760 16546784 -146053146 + AT_rich Low_complexity Low_complexity 1 24 0 236 353 0 0 chrX 16546825 16546910 -146053020 - MIR SINE MIR -94 114 30 373 204 97 9 chrX 16547032 16547145 -146052785 - MLT1J LTR MaLR -11 500 378 432 240 158 0 chrX 16547205 16547351 -146052579 - MLT1J LTR MaLR -341 170 2 23 86 0 0 chrX 16547857 16547915 -146052015 + AT_rich Low_complexity Low_complexity 1 58 0 617 224 71 0 chrX 16548016 16548199 -146051731 - Charlie1 DNA MER1_type 0 2761 2566 * 1778 206 84 31 chrX 16548198 16548687 -146051243 - Charlie1a DNA MER1_type -940 515 1 21 0 0 0 chrX 16550288 16550309 -146049621 + AT_rich Low_complexity Low_complexity 1 21 0 734 266 115 63 chrX 16554033 16554555 -146045375 - MLT1H LTR MaLR 0 549 1 207 342 25 0 chrX 16554607 16554686 -146045244 - L2 LINE L2 0 3313 3233 1883 158 0 16 chrX 16554688 16555004 -146044926 + AluSx SINE Alu 1 311 -1 26 30 0 0 chrX 16555444 16555477 -146044453 + AT_rich Low_complexity Low_complexity 1 33 0 2183 123 0 3 chrX 16558209 16558518 -146041412 + AluSx SINE Alu 3 310 -2 7383 40 7 0 chrX 16558719 16559873 -146040057 - L1PA5 LINE L1 -1 6153 4992 568 261 107 81 chrX 16560438 16560945 -146038985 + L2 LINE L2 2758 3299 -14 389 293 157 56 chrX 16561196 16561609 -146038321 + L2 LINE L2 2818 3272 0 195 284 0 40 chrX 16561942 16562016 -146037914 - L2 LINE L2 -212 3060 2990 641 302 67 4 chrX 16562495 16562720 -146037210 + MIR SINE MIR 10 248 -14 374 333 16 31 chrX 16563159 16563288 -146036642 + MIR SINE MIR 19 145 -63 2229 107 0 3 chrX 16564477 16564777 -146035153 + AluSg SINE Alu 1 299 -11 276 331 54 0 chrX 16565931 16566061 -146033869 - MER103 DNA DNA -19 147 11 465 278 77 40 chrX 16566562 16566810 -146033120 - L1ME3A LINE L1 -37 6133 5877 2290 102 13 0 chrX 16567168 16567472 -146032458 - AluSq SINE Alu -5 308 1 21 0 0 0 chrX 16567721 16567742 -146032188 + AT_rich Low_complexity Low_complexity 1 21 0 266 206 28 47 chrX 16567862 16567969 -146031961 + L1ME4a LINE L1 6016 6120 -1 1758 189 0 6 chrX 16569018 16569331 -146030599 - AluJo SINE Alu -1 311 1 1381 161 146 0 chrX 16569420 16569674 -146030256 - AluJb SINE Alu -11 291 1 213 39 0 0 chrX 16570954 16570980 -146028950 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 534 282 83 40 chrX 16571489 16571837 -146028093 - LTR33 LTR ERVL -158 363 1 738 137 0 0 chrX 16575077 16575194 -146024736 + AluSg/x SINE Alu 196 312 0 279 258 0 0 chrX 16575256 16575318 -146024612 + MIR SINE MIR 201 262 0 2166 85 4 0 chrX 16575478 16575749 -146024181 + AluSc SINE Alu 1 272 -37 363 23 0 0 chrX 16575751 16575795 -146024135 + (CA)n Simple_repeat Simple_repeat 1 44 0 248 304 82 70 chrX 16576361 16576519 -146023411 - L2 LINE L2 -681 2633 2474 466 296 17 26 chrX 16576552 16576723 -146023207 - MIR3 SINE MIR -24 184 13 21 36 0 0 chrX 16578108 16578136 -146021794 + AT_rich Low_complexity Low_complexity 1 28 0 1940 149 0 3 chrX 16578691 16578979 -146020951 + AluJo SINE Alu 5 291 -21 204 292 118 50 chrX 16579268 16579429 -146020501 + L2 LINE L2 2564 2735 -579 428 309 42 37 chrX 16579443 16579634 -146020296 - L2 LINE L2 -17 3296 3105 2379 77 0 16 chrX 16580725 16581036 -146018894 + AluY SINE Alu 1 306 -5 25 31 0 0 chrX 16581052 16581084 -146018846 + AT_rich Low_complexity Low_complexity 1 32 0 1836 174 43 0 chrX 16581962 16582261 -146017669 + AluJb SINE Alu 1 312 0 1152 154 0 0 chrX 16582521 16582696 -146017234 + AluJb SINE Alu 133 307 -5 364 336 86 41 chrX 16583150 16583370 -146016560 - MIR SINE MIR -32 230 1 674 292 105 0 chrX 16583953 16584172 -146015758 + MIR SINE MIR 14 255 -7 1677 185 4 0 chrX 16585012 16585293 -146014637 - AluJb SINE Alu -30 282 1 2362 89 3 0 chrX 16585920 16586223 -146013707 + AluSp SINE Alu 1 304 -9 308 312 32 48 chrX 16586564 16586689 -146013241 + L2 LINE L2 3144 3266 -6 2172 138 0 0 chrX 16588263 16588568 -146011362 + AluSx SINE Alu 1 305 -7 787 152 23 15 chrX 16588736 16588868 -146011062 - FLAM_C SINE Alu 0 133 1 1793 142 59 3 chrX 16590319 16590608 -146009322 - AluJb SINE Alu -7 305 1 183 341 44 11 chrX 16590712 16590803 -146009127 + MIR3 SINE MIR 115 208 0 275 325 90 48 chrX 16592208 16592374 -146007556 - MIR3 SINE MIR -12 196 24 1909 149 0 10 chrX 16595643 16595945 -146003985 - AluJb SINE Alu -13 299 1 590 71 12 0 chrX 16596238 16596322 -146003608 + (TC)n Simple_repeat Simple_repeat 1 85 0 1203 183 5 9 chrX 16596329 16596542 -146003388 - AluJo SINE Alu -16 296 85 207 69 0 0 chrX 16597360 16597389 -146002541 + (A)n Simple_repeat Simple_repeat 1 29 0 573 314 43 5 chrX 16597464 16597652 -146002278 + MLT1J LTR MaLR 67 261 -250 23 33 0 0 chrX 16599015 16599045 -146000885 + AT_rich Low_complexity Low_complexity 1 30 0 1255 150 14 27 chrX 16601460 16601680 -145998250 + MER20 DNA MER1_type 3 219 0 816 236 6 0 chrX 16605380 16605558 -145994372 - MER58A DNA MER1_type -1 223 45 668 264 116 28 chrX 16605863 16605913 -145994017 - MIR SINE MIR -10 252 208 423 0 0 0 chrX 16605913 16605960 -145993970 + (TTA)n Simple_repeat Simple_repeat 2 48 0 668 264 116 28 chrX 16605960 16606125 -145993805 - MIR SINE MIR -54 208 18 2050 115 0 37 chrX 16606552 16606695 -145993235 + AluSx SINE Alu 1 148 -156 2394 78 17 0 chrX 16606695 16606989 -145992941 + AluSg SINE Alu 9 307 -3 2050 115 0 37 chrX 16606989 16607160 -145992770 + AluSx SINE Alu 148 304 0 698 222 58 12 chrX 16607170 16607341 -145992589 + MIR SINE MIR 34 212 -50 202 286 104 13 chrX 16607471 16607548 -145992382 - MIR SINE MIR -21 241 158 4071 161 74 19 chrX 16608253 16609759 -145990171 + L1MB8 LINE L1 4592 6178 0 910 132 201 0 chrX 16611923 16612097 -145987833 - MER3 DNA MER1_type 0 209 1 2218 109 0 16 chrX 16612334 16612646 -145987284 + AluSx SINE Alu 1 307 -5 21 0 0 0 chrX 16613404 16613425 -145986505 + AT_rich Low_complexity Low_complexity 1 21 0 840 304 140 28 chrX 16614874 16615331 -145984599 + L2 LINE L2 2226 2631 -641 1365 276 50 42 chrX 16615331 16615729 -145984201 + MLT1J LTR MaLR 4 408 -103 2291 103 0 10 chrX 16615729 16616031 -145983899 - AluSx SINE Alu -13 299 1 1365 276 50 42 chrX 16616031 16616135 -145983795 + MLT1J LTR MaLR 408 510 -1 840 304 140 28 chrX 16616135 16616485 -145983445 + L2 LINE L2 2631 3132 -140 1643 93 5 5 chrX 16616496 16616710 -145983220 - AluSg/x SINE Alu -15 297 84 769 109 18 0 chrX 16617632 16617742 -145982188 + AluSg/x SINE Alu 137 248 -64 450 251 122 63 chrX 16617771 16617814 -145982116 + MLT1J LTR MaLR 6 45 -466 1942 157 7 3 chrX 16617814 16618119 -145981811 - AluJb SINE Alu -6 306 1 450 251 122 63 chrX 16618119 16618362 -145981568 + MLT1J LTR MaLR 45 309 -202 1567 121 191 4 chrX 16618384 16618641 -145981289 + AluJo SINE Alu 1 305 -7 690 156 8 0 chrX 16618813 16618935 -145980995 - FRAM SINE Alu -13 163 41 558 227 133 0 chrX 16620188 16620338 -145979592 - MER5B DNA MER1_type 0 178 9 513 207 30 67 chrX 16620376 16620540 -145979390 + MIR SINE MIR 70 227 -35 405 0 0 0 chrX 16620797 16620842 -145979088 + (TG)n Simple_repeat Simple_repeat 1 45 0 341 94 0 16 chrX 16620842 16620906 -145979024 + (GA)n Simple_repeat Simple_repeat 2 64 0 2345 96 0 0 chrX 16621963 16622256 -145977674 + AluSx SINE Alu 1 293 -19 2358 97 7 3 chrX 16623263 16623573 -145976357 + AluSx SINE Alu 1 311 -1 1124 174 60 32 chrX 16623715 16623933 -145975997 - AluJb SINE Alu -3 309 86 202 363 157 0 chrX 16624082 16624184 -145975746 + L2 LINE L2 3147 3264 -8 1065 213 37 0 chrX 16624820 16625036 -145974894 + MER58A DNA MER1_type 1 224 0 438 275 47 21 chrX 16625044 16625237 -145974693 - MLT1I LTR MaLR -13 396 199 295 254 205 16 chrX 16625388 16625510 -145974420 - MIR SINE MIR -98 164 20 2104 151 3 0 chrX 16625557 16625868 -145974062 - AluJb SINE Alu 0 312 1 233 214 71 0 chrX 16626407 16626463 -145973467 + MER58 DNA MER1_type 199 258 -83 2404 105 0 7 chrX 16626794 16627099 -145972831 - AluSx SINE Alu -9 303 1 2194 112 7 0 chrX 16627466 16627769 -145972161 + AluSx SINE Alu 1 305 -7 328 239 78 55 chrX 16627779 16627997 -145971933 - L1ME4a LINE L1 -28 6093 5871 2452 97 0 3 chrX 16628022 16628333 -145971597 - AluSq SINE Alu -3 310 1 345 24 0 0 chrX 16628353 16628395 -145971535 + (CAT)n Simple_repeat Simple_repeat 2 43 0 952 192 9 55 chrX 16628704 16628768 -145971162 - MER3 DNA MER1_type 0 209 144 2085 114 31 3 chrX 16628768 16629057 -145970873 + AluSx SINE Alu 1 297 -15 952 192 9 55 chrX 16629057 16629211 -145970719 - MER3 DNA MER1_type -65 144 1 1317 224 133 37 chrX 16629222 16629810 -145970120 + MER39 LTR ERV1 1 707 0 1743 94 31 0 chrX 16629861 16630085 -145969845 - AluSq SINE Alu -82 231 1 888 156 58 0 chrX 16630668 16630822 -145969108 + MLT1A1 LTR MaLR 1 163 -202 2989 155 49 40 chrX 16630824 16631623 -145968307 - LTR1 LTR ERV1 0 785 22 1183 155 33 0 chrX 16631622 16631828 -145968102 + MLT1A1 LTR MaLR 166 365 0 * 3218 55 19 17 chrX 16631887 16632206 -145967724 - L1PA5 LINE L1 -8 6146 5824 2669 47 0 0 chrX 16632206 16632503 -145967427 - AluY SINE Alu -14 297 1 3218 55 19 17 chrX 16632503 16632600 -145967330 - L1PA5 LINE L1 -330 5824 5729 2437 82 10 0 chrX 16632609 16632914 -145967016 - AluSp SINE Alu -5 308 1 2042 123 13 19 chrX 16632914 16633222 -145966708 - AluJo SINE Alu -5 307 1 230 324 29 20 chrX 16633306 16633408 -145966522 + L2 LINE L2 2037 2139 -1175 1439 264 32 16 chrX 16633484 16633920 -145966010 + L1ME3A LINE L1 5495 5937 -233 2290 103 0 3 chrX 16633922 16634223 -145965707 + AluSx SINE Alu 1 300 -12 1912 132 0 11 chrX 16634263 16634594 -145965336 - AluJo SINE Alu 0 328 1 1865 152 55 0 chrX 16635164 16635286 -145964644 + AluJo SINE Alu 1 115 -197 237 65 0 0 chrX 16635286 16635317 -145964613 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1865 152 55 0 chrX 16635317 16635484 -145964446 + AluJo SINE Alu 115 306 -6 1556 234 109 59 chrX 16635603 16636620 -145963310 - L2 LINE L2 0 3313 2247 2169 100 3 7 chrX 16636841 16637140 -145962790 + AluSx SINE Alu 2 299 -13 307 51 0 0 chrX 16637590 16637629 -145962301 - MADE1 DNA Mariner -41 39 1 1346 183 79 12 chrX 16638255 16638583 -145961347 + L1MB7 LINE L1 5835 6184 0 2436 71 14 0 chrX 16638785 16639081 -145960849 + AluSp SINE Alu 1 300 -13 2111 119 3 7 chrX 16639800 16640103 -145959827 - AluSx SINE Alu -10 302 1 1159 92 0 7 chrX 16640535 16640688 -145959242 + AluJb SINE Alu 84 235 -77 502 286 0 8 chrX 16641136 16641269 -145958661 - MER94 DNA DNA 0 134 3 23 0 0 0 chrX 16641486 16641509 -145958421 + AT_rich Low_complexity Low_complexity 1 23 0 2512 83 0 0 chrX 16641874 16642186 -145957744 - AluSp SINE Alu -1 312 1 426 222 0 0 chrX 16642444 16642534 -145957396 + L1ME LINE L1 5689 5778 -343 840 244 48 18 chrX 16642541 16642770 -145957160 + MIR SINE MIR 3 238 -24 847 83 30 0 chrX 16642807 16642939 -145956991 + L1MB2 LINE L1 5995 6130 -41 2418 91 0 0 chrX 16642939 16643236 -145956694 + AluSx SINE Alu 1 297 -15 2548 56 0 0 chrX 16643258 16643561 -145956369 + AluY SINE Alu 1 303 -8 187 255 64 0 chrX 16643842 16643889 -145956041 - L2 LINE L2 -1 3312 3263 411 211 0 0 chrX 16644485 16644556 -145955374 - tRNA-Val-GTG tRNA tRNA -3 73 3 28 0 0 0 chrX 16644818 16644846 -145955084 + GC_rich Low_complexity Low_complexity 1 28 0 539 188 45 0 chrX 16645241 16645353 -145954577 - MER45A DNA AcHobo -5 173 57 424 290 99 0 chrX 16645730 16645861 -145954069 + MIR3 SINE MIR 43 186 -22 2297 96 7 7 chrX 16646611 16646914 -145953016 - AluSx SINE Alu -9 303 1 1056 254 188 10 chrX 16646916 16647310 -145952620 + L2 LINE L2 1013 1476 -1838 676 137 144 52 chrX 16647322 16647475 -145952455 - MER20 DNA MER1_type -31 188 22 391 226 32 0 chrX 16647485 16647578 -145952352 + MER20 DNA MER1_type 43 138 -81 871 140 13 25 chrX 16647578 16647724 -145952206 + AluJb SINE Alu 157 302 -10 2039 128 0 19 chrX 16647724 16648037 -145951893 + AluJb SINE Alu 1 307 -5 3092 281 100 27 chrX 16648048 16648656 -145951274 + L2 LINE L2 1714 2277 -1036 1993 141 7 14 chrX 16648656 16648953 -145950977 - AluSx SINE Alu -17 295 1 3092 281 100 27 chrX 16648953 16649384 -145950546 + L2 LINE L2 2277 2675 -638 1991 156 7 3 chrX 16649384 16649685 -145950245 + AluSx SINE Alu 1 302 -10 3092 281 100 27 chrX 16649685 16649780 -145950150 + L2 LINE L2 2675 2762 -551 252 0 0 0 chrX 16649780 16649808 -145950122 + (CTG)n Simple_repeat Simple_repeat 2 29 0 3092 281 100 27 chrX 16649808 16649993 -145949937 + L2 LINE L2 2762 3133 -180 2288 92 0 38 chrX 16649996 16650195 -145949735 - AluSc SINE Alu -4 305 121 4621 33 2 0 chrX 16650195 16650735 -145949195 - L1PA4 LINE L1 -3 6152 5612 2288 92 0 38 chrX 16650735 16650852 -145949078 - AluSc SINE Alu -188 121 1 527 210 38 57 chrX 16650867 16651024 -145948906 + L2 LINE L2 3151 3304 -9 231 264 34 95 chrX 16651045 16651193 -145948737 + MLT1K LTR MaLR 223 361 -227 788 281 97 15 chrX 16651232 16651573 -145948357 + MLT1I LTR MaLR 19 387 -22 1325 288 101 15 chrX 16651604 16652069 -145947861 - LTR67 LTR ERVL -51 506 2 357 222 120 34 chrX 16652151 16652268 -145947662 + MLT1K LTR MaLR 454 580 -8 2387 90 27 33 chrX 16652416 16652782 -145947148 - THE1B LTR MaLR 0 364 1 815 231 91 12 chrX 16652984 16653226 -145946704 - MIR SINE MIR 0 262 2 2235 109 0 7 chrX 16654199 16654501 -145945429 - AluSx SINE Alu -11 301 2 2606 58 0 0 chrX 16654980 16655288 -145944642 + AluY SINE Alu 2 309 -2 320 294 61 66 chrX 16656076 16656273 -145943657 - MLT1K LTR MaLR -355 233 38 233 111 167 19 chrX 16656323 16656377 -145943553 - MIR SINE MIR 0 262 201 743 257 54 84 chrX 16656379 16656908 -145943022 - MLT1J LTR MaLR 0 511 1 678 250 12 12 chrX 16656911 16657083 -145942847 - MIR SINE MIR -62 200 29 2407 104 0 0 chrX 16657255 16657564 -145942366 - AluSx SINE Alu -3 309 1 387 274 15 30 chrX 16657564 16657699 -145942231 - MIR SINE MIR -114 148 16 2176 139 74 72 chrX 16658308 16658781 -145941149 - MER4B LTR ERV1 -136 474 1 1740 112 82 63 chrX 16658800 16659103 -145940827 + AluJb SINE Alu 1 309 -3 315 212 62 62 chrX 16659121 16659267 -145940663 - MER5A DNA MER1_type 0 189 44 * 635 225 6 38 chrX 16659139 16659299 -145940631 + MER5A DNA MER1_type 35 189 0 630 195 19 32 chrX 16659633 16659787 -145940143 + L2 LINE L2 3158 3309 -4 2277 92 6 48 chrX 16659934 16660250 -145939680 - AluSx SINE Alu -9 303 1 280 231 15 0 chrX 16660888 16660953 -145938977 + MIR SINE MIR 85 150 -58 300 351 50 29 chrX 16661472 16661848 -145938082 + L2 LINE L2 2007 2390 -924 562 242 8 8 chrX 16661907 16662027 -145937903 + L2 LINE L2 3151 3270 -2 425 322 57 29 chrX 16662018 16662263 -145937667 + L2 LINE L2 2408 2659 -655 * 668 249 35 6 chrX 16662414 16662587 -145937343 + MER104 DNA Tc2 1 178 -2 707 252 62 41 chrX 16662592 16662834 -145937096 + MER102a DNA MER1_type 84 330 0 277 59 0 0 chrX 16663086 16663120 -145936810 - HSMAR1 DNA Mariner -1253 34 1 2248 110 0 3 chrX 16663135 16663443 -145936487 - AluSq SINE Alu -6 307 1 2599 203 81 39 chrX 16663443 16664044 -145935886 - L1ME1 LINE L1 -56 6110 5477 1591 182 56 0 chrX 16664044 16664313 -145935617 + AluJb SINE Alu 1 284 -28 2599 203 81 39 chrX 16664313 16664381 -145935549 - L1ME1 LINE L1 -689 5477 5413 275 250 19 92 chrX 16664467 16664510 -145935420 - L1MDb LINE L1 -5923 473 428 2122 229 57 31 chrX 16664510 16665086 -145934844 - MLT1E LTR MaLR -2 591 1 275 250 19 92 chrX 16665086 16665197 -145934733 - L1MDb LINE L1 -5968 428 11 1806 155 10 10 chrX 16665731 16666028 -145933902 - AluJo SINE Alu -15 297 1 281 223 96 25 chrX 16666034 16666191 -145933739 - Charlie7 DNA MER1_type -12 2600 2433 * 311 220 40 40 chrX 16666178 16666278 -145933652 - Charlie7 DNA MER1_type -2511 101 2 460 208 69 8 chrX 16666730 16666860 -145933070 - LTR16C LTR ERVL 0 491 354 242 336 25 0 chrX 16667037 16667159 -145932771 + L2 LINE L2 2966 3090 -182 192 309 0 0 chrX 16667219 16667274 -145932656 - MIR SINE MIR -12 250 196 681 247 128 17 chrX 16667520 16667755 -145932175 + MIR SINE MIR 2 262 0 1999 132 24 0 chrX 16668082 16668370 -145931560 + AluSx SINE Alu 1 295 -17 184 256 0 64 chrX 16668494 16668572 -145931358 - L2 LINE L2 -182 3090 3018 408 20 0 0 chrX 16669816 16669865 -145930065 + (TG)n Simple_repeat Simple_repeat 1 49 0 385 293 99 26 chrX 16670576 16670767 -145929163 + MIR SINE MIR 55 259 -3 260 277 48 0 chrX 16671025 16671108 -145928822 - MIR SINE MIR -72 190 104 526 178 153 17 chrX 16671232 16671350 -145928580 - MER103 DNA DNA -19 147 14 27 29 0 0 chrX 16672869 16672903 -145927027 + AT_rich Low_complexity Low_complexity 1 34 0 229 297 27 0 chrX 16673134 16673208 -145926722 - L2 LINE L2 0 3272 3197 2052 145 0 7 chrX 16673497 16673801 -145926129 - AluJb SINE Alu -10 302 1 550 236 43 7 chrX 16674285 16674425 -145925505 + MER5B DNA MER1_type 5 149 -29 399 224 61 0 chrX 16674411 16674509 -145925421 - MER5B DNA MER1_type -72 106 3 * 187 313 232 0 chrX 16674513 16674612 -145925318 + MIR3 SINE MIR 82 203 -5 202 127 0 73 chrX 16674635 16674690 -145925240 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 521 265 8 96 chrX 16674810 16675007 -145924923 + L3 LINE CR1 518 688 -889 2091 134 0 3 chrX 16675007 16675306 -145924624 + AluJb SINE Alu 1 298 -14 521 265 8 96 chrX 16675306 16675368 -145924562 + L3 LINE CR1 688 754 -823 685 141 8 2 chrX 16675561 16675817 -145924113 + AluJ SINE Alu 1 306 -6 2215 116 0 3 chrX 16676038 16676341 -145923589 + AluSx SINE Alu 1 302 -10 2606 68 0 0 chrX 16676394 16676702 -145923228 - AluSg SINE Alu -2 308 1 4674 161 81 11 chrX 16678673 16679067 -145920863 - L1MB5 LINE L1 -8 6166 5801 2478 78 7 0 chrX 16679067 16679373 -145920557 - AluSx SINE Alu -4 308 1 4674 161 81 11 chrX 16679373 16680042 -145919888 - L1MB5 LINE L1 -373 5801 5028 3286 95 18 31 chrX 16680041 16680556 -145919374 + L1PB4 LINE L1 5282 5789 -367 * 227 152 0 0 chrX 16680575 16680621 -145919309 + L1MC4 LINE L1 6658 6703 -1339 228 216 0 0 chrX 16680624 16680675 -145919255 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2450 96 34 8 chrX 16680676 16681030 -145918900 + L1PB4 LINE L1 5782 6144 -12 7233 188 52 21 chrX 16681047 16681330 -145918600 - L1MB5 LINE L1 -1107 5039 4766 2382 84 3 3 chrX 16681330 16681627 -145918303 - AluSg SINE Alu -13 297 1 7233 188 52 21 chrX 16681627 16683000 -145916930 - L1MB5 LINE L1 -1380 4766 3331 254 231 0 0 chrX 16683025 16683077 -145916853 - MER66A LTR ERV1 -140 338 287 289 187 130 32 chrX 16683238 16683361 -145916569 - L1ME4a LINE L1 -43 6078 5944 526 276 93 29 chrX 16683363 16683674 -145916256 - L1ME4a LINE L1 -205 5916 5586 331 327 42 65 chrX 16683675 16683838 -145916092 - MIR SINE MIR 0 262 106 2363 97 0 3 chrX 16683838 16684146 -145915784 - AluSg SINE Alu -3 307 1 331 327 42 65 chrX 16684146 16684245 -145915685 - MIR SINE MIR -156 106 6 288 237 161 8 chrX 16684359 16684477 -145915453 - MIR SINE MIR -72 190 55 826 158 38 32 chrX 16684667 16684825 -145915105 + FRAM SINE Alu 1 159 -7 2240 116 0 7 chrX 16684825 16685119 -145914811 + AluSx SINE Alu 1 292 -20 353 228 152 35 chrX 16685222 16685393 -145914537 - MIR SINE MIR -70 192 2 2516 63 0 0 chrX 16685827 16686130 -145913800 + AluY SINE Alu 2 304 -7 186 133 0 0 chrX 16686627 16686657 -145913273 + (T)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chrX 16686663 16686684 -145913246 + AT_rich Low_complexity Low_complexity 1 21 0 226 164 55 0 chrX 16686726 16686781 -145913149 - L1MC4 LINE L1 -6 8036 7979 602 236 31 15 chrX 16686789 16686984 -145912946 - L1MC4 LINE L1 -156 7886 7689 443 306 183 4 chrX 16686984 16687477 -145912453 + L2 LINE L2 1679 2259 -1055 1858 135 3 60 chrX 16687864 16688183 -145911747 + AluJo SINE Alu 1 301 -11 2246 128 0 0 chrX 16688915 16689221 -145910709 - AluJb SINE Alu -6 306 1 1794 198 112 21 chrX 16689326 16689801 -145910129 + L1MC4 LINE L1 7120 7637 -405 180 0 0 0 chrX 16689810 16689830 -145910100 + (GA)n Simple_repeat Simple_repeat 1 20 0 2437 85 0 25 chrX 16689884 16690201 -145909729 + AluSx SINE Alu 1 309 -3 254 373 42 0 chrX 16690332 16690544 -145909386 + L2 LINE L2 651 871 -2443 442 141 0 0 chrX 16690614 16690685 -145909245 - L1PB4 LINE L1 -8 6148 6078 339 316 10 0 chrX 16691111 16691240 -145908690 - MIR3 SINE MIR -25 183 53 971 196 105 18 chrX 16692187 16692463 -145907467 - L2 LINE L2 -1 3312 3013 2253 94 0 0 chrX 16692563 16692849 -145907081 - AluSx SINE Alu -16 296 11 267 247 62 0 chrX 16692966 16693047 -145906883 - MIR SINE MIR -12 250 165 219 36 0 0 chrX 16693100 16693128 -145906802 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 346 238 127 28 chrX 16693147 16693328 -145906602 - L2 LINE L2 -42 3271 3073 2216 105 0 26 chrX 16693358 16693662 -145906268 - AluSx SINE Alu -16 296 1 435 284 62 82 chrX 16693700 16693943 -145905987 + MIR SINE MIR 5 242 -20 195 162 0 0 chrX 16694185 16694222 -145905708 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 1229 187 189 6 chrX 16694750 16695280 -145904650 - LTR50 LTR ERVL -3 792 3 2106 97 7 0 chrX 16695648 16695970 -145903960 + AluSg SINE Alu 1 324 0 228 261 202 22 chrX 16696043 16696143 -145903787 + MIR SINE MIR 37 153 -62 2174 125 0 10 chrX 16696233 16696536 -145903394 - AluSx SINE Alu -12 300 1 249 275 38 0 chrX 16696565 16696645 -145903285 - MIR3 SINE MIR -17 191 109 337 224 0 78 chrX 16696649 16696765 -145903165 + MIR SINE MIR 6 112 -150 3298 111 75 28 chrX 16697026 16697556 -145902374 - MER21A LTR ERV1 0 931 377 718 130 298 0 chrX 16697562 16697723 -145902207 - MER21A LTR ERV1 -667 264 56 366 42 0 0 chrX 16697731 16697779 -145902151 + (TC)n Simple_repeat Simple_repeat 2 49 0 2332 101 39 31 chrX 16697791 16698148 -145901782 - THE1B LTR MaLR 0 364 5 281 287 0 11 chrX 16698679 16698773 -145901157 - MIR SINE MIR -12 250 158 252 233 44 56 chrX 16699281 16699371 -145900559 - L1ME LINE L1 -482 5688 5600 746 258 0 0 chrX 16699399 16699558 -145900372 - MIR SINE MIR -98 164 6 2351 110 0 0 chrX 16700288 16700589 -145899341 - AluSq SINE Alu -12 301 1 1832 118 10 7 chrX 16701173 16701461 -145898469 - L1MB8 LINE L1 -11 6167 5879 1366 101 0 3 chrX 16701461 16701689 -145898241 - AluSc SINE Alu -11 298 1 2872 120 19 30 chrX 16701691 16702159 -145897771 - L1MB8 LINE L1 -298 5886 5424 2257 116 0 7 chrX 16702496 16702797 -145897133 + AluSq SINE Alu 1 299 -14 1463 239 65 42 chrX 16702825 16703272 -145896658 - LTR16A1 LTR ERVL 0 457 1 42465 61 4 2 chrX 16703706 16709834 -145890096 - L1PA5 LINE L1 -2 6152 11 2166 115 0 3 chrX 16709988 16710283 -145889647 - AluSg SINE Alu -16 294 1 22 0 0 0 chrX 16710370 16710392 -145889538 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrX 16710491 16710513 -145889417 + (T)n Simple_repeat Simple_repeat 1 22 0 282 288 34 55 chrX 16710866 16711012 -145888918 - MER5B DNA MER1_type -9 169 27 1575 189 95 78 chrX 16711069 16711352 -145888578 - L1ME3A LINE L1 -5 6165 5867 1947 128 19 44 chrX 16711352 16711672 -145888258 - AluSx SINE Alu 0 312 1 1575 189 95 78 chrX 16711672 16711902 -145888028 - L1ME3A LINE L1 -303 5867 5643 1078 267 49 72 chrX 16711912 16712151 -145887779 - MLT1H LTR MaLR -7 542 299 2113 125 35 0 chrX 16712151 16712440 -145887490 + AluSx SINE Alu 1 299 -13 1078 267 49 72 chrX 16712440 16712755 -145887175 - MLT1H LTR MaLR -250 299 1 916 246 41 92 chrX 16712757 16713015 -145886915 - L1ME3A LINE L1 -523 5641 5408 2411 94 3 0 chrX 16713015 16713323 -145886607 - AluSx SINE Alu -3 309 1 916 246 41 92 chrX 16713323 16713455 -145886475 - L1ME3A LINE L1 -756 5408 5271 2160 105 3 10 chrX 16713459 16713765 -145886165 - AluSx SINE Alu -8 304 1 247 294 24 8 chrX 16714214 16714340 -145885590 - L1ME3A LINE L1 -1729 4417 4290 649 295 58 0 chrX 16714369 16714559 -145885371 - MIR SINE MIR -11 251 51 37 23 0 0 chrX 16714574 16714618 -145885312 + AT_rich Low_complexity Low_complexity 1 44 0 359 69 75 52 chrX 16714623 16714797 -145885133 + (TA)n Simple_repeat Simple_repeat 1 178 0 1568 138 24 12 chrX 16714797 16715043 -145884887 - AluJb SINE Alu -21 291 43 517 295 122 25 chrX 16715063 16715416 -145884514 - L1ME3A LINE L1 -1871 4275 3889 711 255 162 10 chrX 16716357 16716561 -145883369 + MIR SINE MIR 2 236 -26 1518 104 24 9 chrX 16717052 16717263 -145882667 - AluJb SINE Alu -13 299 86 1539 269 72 35 chrX 16718088 16718600 -145881330 - MLT1H LTR MaLR -16 533 3 199 246 29 58 chrX 16719232 16719301 -145880629 + L2 LINE L2 3239 3305 -8 189 0 0 0 chrX 16719322 16719343 -145880587 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 11267 190 55 34 chrX 16719737 16721072 -145878858 - L1MB7 LINE L1 -16 6666 5360 2260 119 0 0 chrX 16721072 16721375 -145878555 + AluSx SINE Alu 1 303 -9 11267 190 55 34 chrX 16721375 16721938 -145877992 - L1MB7 LINE L1 -1322 5360 4810 264 59 0 0 chrX 16721938 16721972 -145877958 + (TG)n Simple_repeat Simple_repeat 1 34 0 11267 190 55 34 chrX 16721972 16723754 -145876176 - L1MB7 LINE L1 -1872 4810 708 440 268 37 12 chrX 16723761 16723847 -145876083 - L1MB7 LINE L1 -6374 168 86 180 0 0 0 chrX 16723847 16723867 -145876063 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 440 268 37 12 chrX 16723867 16723944 -145875986 - L1MB7 LINE L1 -6456 86 1 1915 161 3 13 chrX 16724165 16724475 -145875455 - AluJb SINE Alu -5 307 1 237 148 0 37 chrX 16724599 16724653 -145875277 + L1MCc LINE L1 1417 1468 -4955 1947 176 21 20 chrX 16724792 16724859 -145875071 - L1MB7 LINE L1 0 6183 6118 2219 93 0 0 chrX 16724859 16725139 -145874791 + AluSx SINE Alu 1 280 -32 1947 176 21 20 chrX 16725139 16725512 -145874418 - L1MB7 LINE L1 -65 6118 5768 2396 89 0 0 chrX 16725762 16726054 -145873876 - AluSx SINE Alu -20 292 1 847 137 0 0 chrX 16726502 16726619 -145873311 + FLAM_C SINE Alu 1 117 -26 730 168 0 0 chrX 16726643 16726756 -145873174 - MER33 DNA MER1_type -211 113 1 252 229 0 49 chrX 16726994 16727055 -145872875 - L2 LINE L2 0 3272 3215 229 283 174 0 chrX 16728479 16728571 -145871359 - MIR3 SINE MIR -1 207 100 25 0 0 0 chrX 16728867 16728892 -145871038 + AT_rich Low_complexity Low_complexity 1 25 0 2264 93 0 3 chrX 16729572 16729861 -145870069 - AluSx SINE Alu -24 288 1 378 290 32 24 chrX 16730029 16730153 -145869777 - L2 LINE L2 -11 3261 3137 1070 161 0 23 chrX 16730176 16730350 -145869580 - AluJb SINE Alu -6 306 137 2231 122 0 3 chrX 16730352 16730655 -145869275 - AluSx SINE Alu -10 302 1 702 249 49 16 chrX 16730683 16730868 -145869062 + MIR SINE MIR 49 239 -23 3251 63 2 0 chrX 16731998 16732391 -145867539 - MER41A LTR ERV1 0 554 161 277 30 0 0 chrX 16732391 16732424 -145867506 - MADE1 DNA Mariner 0 80 48 5805 52 1 0 chrX 16732454 16733113 -145866817 - PABL_A LTR ERV1 0 660 1 25 0 0 0 chrX 16733269 16733294 -145866636 + AT_rich Low_complexity Low_complexity 1 25 0 688 249 8 51 chrX 16734945 16735182 -145864748 + L1MA9 LINE L1 6061 6287 -25 2350 112 0 3 chrX 16735356 16735670 -145864260 + AluSq SINE Alu 1 313 0 1962 122 7 18 chrX 16736341 16736653 -145863277 + AluSq SINE Alu 1 309 0 2250 102 3 0 chrX 16736840 16737135 -145862795 + AluSg SINE Alu 1 296 -14 539 284 72 88 chrX 16738235 16738485 -145861445 - L2 LINE L2 -5 3267 3022 659 278 50 68 chrX 16739890 16740228 -145859702 - MARNA DNA Mariner -23 563 232 295 295 0 0 chrX 16740414 16740507 -145859423 - L1P LINE L1 -2466 3680 3588 191 279 0 0 chrX 16740546 16740589 -145859341 + MER5A DNA MER1_type 144 186 -3 2387 116 88 66 chrX 16741197 16741407 -145858523 - Tigger2a DNA MER2_type -2276 432 228 1719 127 0 108 chrX 16741407 16741723 -145858207 + AluSx SINE Alu 1 282 -30 2387 116 88 66 chrX 16741723 16741935 -145857995 - Tigger2a DNA MER2_type -2480 228 1 1358 26 0 0 chrX 16742038 16742194 -145857736 - L1P LINE L1 -2456 3690 3535 2891 207 28 8 chrX 16742194 16742730 -145857200 - MLT1F1 LTR MaLR -13 554 8 487 286 118 13 chrX 16742842 16743223 -145856707 - L1MEc LINE L1 -3709 2523 2116 22 0 0 0 chrX 16743574 16743596 -145856334 + AT_rich Low_complexity Low_complexity 1 22 0 2523 78 3 0 chrX 16743654 16743963 -145855967 - AluSp SINE Alu -3 310 1 480 270 70 0 chrX 16744041 16744156 -145855774 + L2 LINE L2 3180 3302 -11 362 326 129 13 chrX 16744235 16744683 -145855247 - HAL1 LINE L1 -854 1653 1154 2342 93 0 22 chrX 16744786 16745099 -145854831 - AluSx SINE Alu -6 306 1 336 24 0 0 chrX 16745784 16745825 -145854105 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 1678 164 3 24 chrX 16745825 16746109 -145853821 - AluJb SINE Alu -30 282 3 2322 97 3 0 chrX 16746213 16746513 -145853417 + AluSp SINE Alu 1 301 -12 492 280 24 15 chrX 16746582 16746750 -145853180 - MIR SINE MIR -42 220 55 1606 78 0 45 chrX 16747078 16747321 -145852609 - AluY SINE Alu 0 311 80 2079 141 3 0 chrX 16747321 16747618 -145852312 - AluSx SINE Alu -12 300 2 271 361 118 41 chrX 16749692 16750058 -145849872 - L2 LINE L2 -68 3204 2811 1084 295 117 52 chrX 16750105 16750347 -145849583 - L2 LINE L2 -584 2730 2505 2447 60 0 7 chrX 16750347 16750645 -145849285 + AluY SINE Alu 1 296 -15 1084 295 117 52 chrX 16750645 16751188 -145848742 - L2 LINE L2 -809 2505 1894 238 270 14 68 chrX 16751681 16751755 -145848175 + L2 LINE L2 3116 3185 -87 546 269 12 25 chrX 16752245 16752405 -145847525 - MER74A LTR ERVL -13 545 388 2473 80 3 0 chrX 16752405 16752707 -145847223 + AluSx SINE Alu 1 303 -9 1443 139 126 47 chrX 16752736 16753010 -145846920 - MER74A LTR ERVL -233 325 24 2313 96 7 0 chrX 16753010 16753312 -145846618 + AluSx SINE Alu 1 304 -8 1443 139 126 47 chrX 16753312 16753338 -145846592 - MER74A LTR ERVL -534 24 1 1757 93 14 50 chrX 16753942 16754220 -145845710 - L1MB3 LINE L1 -4 6179 5912 387 148 0 0 chrX 16755097 16755158 -145844772 - MER94 DNA DNA -35 99 39 1919 160 3 0 chrX 16755175 16755469 -145844461 + AluJo SINE Alu 1 295 -17 479 261 65 38 chrX 16755871 16756055 -145843875 + MIR SINE MIR 7 195 -67 2110 122 10 6 chrX 16756074 16756385 -145843545 + AluSx SINE Alu 1 312 0 953 144 0 0 chrX 16757213 16757345 -145842585 + FLAM_C SINE Alu 2 133 0 2374 47 40 3 chrX 16757609 16757907 -145842023 + AluY SINE Alu 1 309 -2 10309 186 40 45 chrX 16758981 16760273 -145839657 - L1MB8 LINE L1 -1 6988 5690 1996 103 107 0 chrX 16760273 16760545 -145839385 - AluSx SINE Alu -11 301 1 10309 186 40 45 chrX 16760545 16762257 -145837673 - L1MB8 LINE L1 -1299 5690 3970 2646 87 62 0 chrX 16762257 16762612 -145837318 - MER51B LTR ERV1 0 377 1 10309 186 40 45 chrX 16762612 16764603 -145835327 - L1MB8 LINE L1 -3019 3970 84 2079 121 0 0 chrX 16764603 16764893 -145835037 + AluJb SINE Alu 2 291 -21 10309 186 40 45 chrX 16764893 16764961 -145834969 - L1MB8 LINE L1 -6905 84 17 2252 119 0 0 chrX 16765536 16765830 -145834100 - AluSx SINE Alu -18 294 1 23 0 0 0 chrX 16767039 16767062 -145832868 + AT_rich Low_complexity Low_complexity 1 23 0 686 212 21 108 chrX 16767085 16767268 -145832662 - L2 LINE L2 0 3313 3154 2268 73 30 7 chrX 16767268 16767568 -145832362 - AluY SINE Alu -4 307 1 686 212 21 108 chrX 16767568 16767625 -145832305 - L2 LINE L2 -159 3154 3094 652 204 0 9 chrX 16767653 16767766 -145832164 - AluJ SINE Alu -10 302 191 941 139 0 0 chrX 16767770 16767907 -145832023 - AluJ SINE Alu -175 137 1 208 259 102 46 chrX 16767942 16768050 -145831880 - MIR SINE MIR -76 132 19 2081 116 0 14 chrX 16768207 16768500 -145831430 - AluSg SINE Alu -21 289 1 2356 72 10 0 chrX 16768530 16768822 -145831108 + AluSg SINE Alu 1 295 -15 1167 126 0 0 chrX 16768832 16768991 -145830939 + AluSp SINE Alu 135 293 -20 239 321 24 0 chrX 16769663 16769747 -145830183 - MIR SINE MIR -59 149 64 29 47 0 0 chrX 16769883 16769926 -145830004 + AT_rich Low_complexity Low_complexity 1 43 0 750 214 141 5 chrX 16769976 16770168 -145829762 - MER2 DNA MER2_type 0 345 128 238 228 35 18 chrX 16770168 16770225 -145829705 + Tigger5 DNA MER2_type 2261 2318 -5 290 175 238 0 chrX 16770227 16770290 -145829640 - Tigger5 DNA MER2_type -2245 78 1 * 782 160 20 53 chrX 16770290 16770428 -145829502 - MER2 DNA MER2_type -211 134 2 341 260 122 8 chrX 16771096 16771219 -145828711 - MIR3 SINE MIR -6 202 66 2292 109 0 3 chrX 16771275 16771586 -145828344 + AluSx SINE Alu 1 310 -2 1602 186 3 23 chrX 16771644 16771945 -145827985 - AluJb SINE Alu -16 296 2 3955 96 4 6 chrX 16772532 16773044 -145826886 - MER9 LTR ERVK 0 511 1 2001 136 0 0 chrX 16773045 16773331 -145826599 - AluJb SINE Alu -26 286 1 2448 84 0 0 chrX 16773883 16774181 -145825749 - AluSx SINE Alu -14 298 1 2302 107 10 0 chrX 16774549 16774858 -145825072 - AluSx SINE Alu 0 312 1 209 294 59 0 chrX 16775053 16775121 -145824809 - MIR SINE MIR -103 105 34 2311 104 0 0 chrX 16775137 16775435 -145824495 + AluSc SINE Alu 1 298 -11 2269 109 0 3 chrX 16776594 16776905 -145823025 - AluSx SINE Alu -2 310 1 295 261 115 46 chrX 16777101 16777231 -145822699 - L2 LINE L2 -2 3311 3173 2276 102 0 0 chrX 16777241 16777534 -145822396 - AluSx SINE Alu -19 293 1 2458 75 0 0 chrX 16777544 16777839 -145822091 - AluSc SINE Alu -14 295 1 526 276 16 45 chrX 16777839 16778105 -145821825 - L1MC4a LINE L1 -176 5945 5683 * 3120 131 23 23 chrX 16778097 16778622 -145821308 + L1MA9 LINE L1 5266 5790 -522 22 0 0 0 chrX 16778630 16778652 -145821278 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chrX 16778666 16778716 -145821214 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1767 144 8 0 chrX 16778720 16778983 -145820947 + MER2 DNA MER2_type 7 271 -74 2192 119 3 0 chrX 16778998 16779293 -145820637 + AluJb SINE Alu 1 296 -16 1311 126 70 0 chrX 16779330 16779545 -145820385 + L1MA9 LINE L1 5782 6011 -301 403 99 10 168 chrX 16779544 16779645 -145820285 + L1MA9 LINE L1 6228 6312 0 * 306 0 0 0 chrX 16779651 16779685 -145820245 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chrX 16779822 16779852 -145820078 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chrX 16779908 16779930 -145820000 + (CA)n Simple_repeat Simple_repeat 1 22 0 8745 220 47 54 chrX 16779942 16780622 -145819308 - L1MB7 LINE L1 -9 6411 5727 2337 95 0 3 chrX 16780622 16780927 -145819003 - AluSq SINE Alu -9 304 1 8745 220 47 54 chrX 16780927 16781162 -145818768 - L1MB7 LINE L1 -693 5727 5492 261 0 0 0 chrX 16781162 16781191 -145818739 + (TA)n Simple_repeat Simple_repeat 2 30 0 1949 131 38 0 chrX 16781191 16781481 -145818449 - AluJb SINE Alu -11 301 1 8745 220 47 54 chrX 16781481 16782331 -145817599 - L1MB7 LINE L1 -927 5493 4638 1588 152 109 7 chrX 16782331 16782614 -145817316 - AluJo SINE Alu 0 312 1 8745 220 47 54 chrX 16782614 16782673 -145817257 - L1MB7 LINE L1 -1782 4638 4580 2435 83 0 0 chrX 16782673 16782973 -145816957 + AluSg SINE Alu 1 300 -10 8745 220 47 54 chrX 16782973 16783407 -145816523 - L1MB7 LINE L1 -1840 4580 4144 6375 114 8 11 chrX 16783407 16784702 -145815228 - L1PA16 LINE L1 -3 6163 4872 8745 220 47 54 chrX 16784702 16785465 -145814465 - L1MB7 LINE L1 -2276 4144 3377 1337 103 0 0 chrX 16785465 16785639 -145814291 - AluSp SINE Alu -3 310 137 8745 220 47 54 chrX 16785639 16786643 -145813287 - L1MB7 LINE L1 -3043 3377 2339 333 0 0 0 chrX 16786643 16786680 -145813250 + (TG)n Simple_repeat Simple_repeat 2 38 0 227 296 80 77 chrX 16786762 16786923 -145813007 - L1M4 LINE L1 -1152 4994 4830 2331 89 0 3 chrX 16786923 16787214 -145812716 - AluSc SINE Alu -19 290 1 227 296 80 77 chrX 16787214 16787363 -145812567 - L1M4 LINE L1 -1316 4830 4683 225 154 0 0 chrX 16787435 16787474 -145812456 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 2253 119 0 0 chrX 16787945 16788239 -145811691 - AluSg SINE Alu -12 298 5 984 225 171 23 chrX 16788573 16788959 -145810971 + L1MEd LINE L1 561 1003 -5116 2167 110 0 36 chrX 16788975 16789284 -145810646 + AluSq SINE Alu 1 298 -15 419 271 76 48 chrX 16789284 16789597 -145810333 + L1MEd LINE L1 1085 1399 -4730 1537 244 100 37 chrX 16789648 16789963 -145809967 + L1MEd LINE L1 2267 2561 -3568 2415 78 0 0 chrX 16789963 16790259 -145809671 - AluY SINE Alu -15 296 1 1537 244 100 37 chrX 16790259 16790516 -145809414 + L1MEd LINE L1 2561 2895 -3234 2524 63 0 0 chrX 16790516 16790819 -145809111 + AluY SINE Alu 1 303 -8 1537 244 100 37 chrX 16790819 16790955 -145808975 + L1MEd LINE L1 2895 3021 -3108 1949 133 0 14 chrX 16790981 16791286 -145808644 - AluSx SINE Alu 0 301 1 414 0 0 0 chrX 16791333 16791379 -145808551 + (GA)n Simple_repeat Simple_repeat 1 46 0 237 241 19 142 chrX 16791394 16791556 -145808374 - LTR41 LTR ERVL -132 641 500 596 267 13 83 chrX 16791756 16791982 -145807948 - LTR41 LTR ERVL -547 248 5 1438 282 58 13 chrX 16792019 16792084 -145807846 + L1M4 LINE L1 4373 4434 -1712 1644 62 0 0 chrX 16792084 16792277 -145807653 - AluY SINE Alu -13 298 106 1438 282 58 13 chrX 16792277 16792760 -145807170 + L1M4 LINE L1 4434 4946 -1200 255 235 0 104 chrX 16792833 16792917 -145807013 + L1ME4a LINE L1 6017 6089 -32 2079 109 0 11 chrX 16792917 16793232 -145806698 + AluSx SINE Alu 1 312 0 255 235 0 104 chrX 16793232 16793261 -145806669 + L1ME4a LINE L1 6089 6119 -2 2259 96 0 0 chrX 16793734 16794026 -145805904 + AluSg SINE Alu 1 292 -18 2172 128 0 0 chrX 16794240 16794538 -145805392 - AluSx SINE Alu -14 298 1 584 277 80 28 chrX 16794893 16795106 -145804824 + MIR SINE MIR 2 225 -37 561 125 0 23 chrX 16795558 16795646 -145804284 + LTR54 LTR ERV1 1 86 -424 2513 68 10 0 chrX 16795992 16796300 -145803630 - AluSp SINE Alu -2 311 1 1558 184 77 21 chrX 16797728 16798131 -145801799 + LTR54 LTR ERV1 1 480 -30 551 295 44 18 chrX 16798133 16798341 -145801589 + MER57-int LTR ERV1 1913 2100 -4231 1060 195 55 61 chrX 16798387 16798738 -145801192 + MSTD LTR MaLR 1 396 0 329 188 58 0 chrX 16798988 16799057 -145800873 + MER57-int LTR ERV1 467 539 -6998 356 177 0 101 chrX 16799355 16799434 -145800496 + MER57-int LTR ERV1 755 825 -4046 2280 112 3 0 chrX 16799440 16799744 -145800186 + AluSq SINE Alu 1 305 -8 2393 88 7 0 chrX 16799817 16800124 -145799806 - AluSg SINE Alu -1 309 1 270 175 48 0 chrX 16800205 16800268 -145799662 + LTR57-int LTR ERVL 449 514 -4829 288 0 0 0 chrX 16800468 16800500 -145799430 + (A)n Simple_repeat Simple_repeat 1 32 0 2179 131 0 0 chrX 16800655 16800952 -145798978 - AluSq SINE Alu -16 297 1 2343 51 6 41 chrX 16800994 16801310 -145798620 + AluY SINE Alu 1 305 -6 258 269 0 0 chrX 16801771 16801823 -145798107 + MER57-int LTR ERV1 3363 3414 -4123 737 188 125 12 chrX 16801838 16801998 -145797932 + MER34C LTR ERV1 160 337 -248 2251 77 0 20 chrX 16801998 16802298 -145797632 - AluY SINE Alu -17 294 1 484 138 41 152 chrX 16802299 16802444 -145797486 + MER57-int LTR ERV1 1994 3552 -3985 766 259 126 40 chrX 16802593 16803300 -145796630 + LTR1 LTR ERV1 28 1009 -11 487 214 115 73 chrX 16803407 16803599 -145796331 + MER57-int LTR ERV1 2294 2493 -2378 2139 88 20 0 chrX 16803683 16803977 -145795953 + AluSg SINE Alu 1 300 -10 635 183 39 130 chrX 16804214 16804569 -145795361 + MER57-int LTR ERV1 1718 2040 -6080 679 250 24 38 chrX 16804574 16804631 -145795299 + MER57-int LTR ERV1 2344 2400 -2723 2135 109 0 0 chrX 16804631 16804925 -145795005 + AluSx SINE Alu 1 294 -18 679 250 24 38 chrX 16804925 16805079 -145794851 + MER57-int LTR ERV1 2400 2552 -2571 848 211 0 0 chrX 16805454 16805615 -145794315 - FRAM SINE Alu -14 162 2 387 255 121 34 chrX 16806018 16806167 -145793763 + MER5B DNA MER1_type 17 178 0 251 291 22 25 chrX 16806183 16806314 -145793616 - MER5B DNA MER1_type -2 176 56 2180 111 0 0 chrX 16806582 16806880 -145793050 - AluSg SINE Alu -12 298 1 2324 80 3 0 chrX 16807303 16807604 -145792326 - AluSq SINE Alu -11 302 1 22 0 0 0 chrX 16808005 16808027 -145791903 + AT_rich Low_complexity Low_complexity 1 22 0 2304 100 0 0 chrX 16808338 16808647 -145791283 - AluSx SINE Alu -3 309 1 2138 113 7 0 chrX 16809068 16809370 -145790560 - AluSq SINE Alu -9 304 1 1534 162 38 17 chrX 16809371 16809459 -145790471 + MER57-int LTR ERV1 3060 3145 -1791 1966 86 4 0 chrX 16809459 16809716 -145790214 + AluSx SINE Alu 42 299 -13 1534 162 38 17 chrX 16809716 16809955 -145789975 + MER57-int LTR ERV1 3145 3812 -1124 2284 71 7 3 chrX 16810050 16810346 -145789584 - AluSx SINE Alu -15 297 1 2538 226 49 19 chrX 16810357 16811088 -145788842 + MER57-int LTR ERV1 3411 4230 -641 2376 211 28 8 chrX 16811098 16811568 -145788362 + MER57-int LTR ERV1 6665 7143 -394 1894 142 71 136 chrX 16811571 16811817 -145788113 + LTR54 LTR ERV1 1 195 -315 2006 88 36 26 chrX 16811817 16812122 -145787808 + AluSq SINE Alu 1 308 -5 1894 142 71 136 chrX 16812122 16812412 -145787518 + LTR54 LTR ERV1 195 502 -8 1956 232 186 14 chrX 16812510 16813075 -145786855 + MLT2F LTR ERVL 2 663 0 501 277 0 15 chrX 16813078 16813215 -145786715 + ERVL-F LTR ERVL 4 138 -5626 886 265 31 5 chrX 16813413 16813636 -145786294 + ERVL-F LTR ERVL 386 614 -5150 4755 42 3 45 chrX 16813638 16813905 -145786025 - LTR10C LTR ERV1 -1 590 313 2135 104 0 3 chrX 16813905 16814204 -145785726 - AluY SINE Alu -13 298 1 4755 42 3 45 chrX 16814204 16814552 -145785378 - LTR10C LTR ERV1 -278 313 1 433 273 0 50 chrX 16814600 16814739 -145785191 + ERVL-F LTR ERVL 763 894 -4870 656 304 91 45 chrX 16814797 16815195 -145784735 + L1MEc LINE L1 1847 2262 -4134 383 243 133 110 chrX 16815261 16815434 -145784496 + MLT1H LTR MaLR 296 472 -77 1892 134 9 22 chrX 16815438 16815788 -145784142 - MER4A LTR ERV1 0 664 261 381 139 241 0 chrX 16815788 16815867 -145784063 - MER4A LTR ERV1 -566 98 1 2059 104 6 22 chrX 16815889 16816064 -145783866 - AluSp SINE Alu 0 313 144 5721 127 18 16 chrX 16816064 16816992 -145782938 - LTR5 LTR ERVK 0 969 40 2059 104 6 22 chrX 16816992 16817133 -145782797 - AluSp SINE Alu -169 144 2 225 273 45 55 chrX 16817213 16817276 -145782654 + MLT1H-int LTR MaLR 16 79 -1292 5509 58 1 0 chrX 16817276 16817935 -145781995 - PABL_A LTR ERV1 0 660 1 225 273 45 55 chrX 16817935 16817981 -145781949 + MLT1H-int LTR MaLR 79 124 -1247 378 293 34 27 chrX 16818075 16818222 -145781708 + MLT1H-int LTR MaLR 397 544 -827 2705 228 130 29 chrX 16818345 16819316 -145780614 + L1MEc LINE L1 37 908 -5307 2312 83 3 0 chrX 16819316 16819616 -145780314 + AluSp SINE Alu 1 301 -12 2705 228 130 29 chrX 16819616 16820124 -145779806 + L1MEc LINE L1 908 4929 -1286 2376 144 25 74 chrX 16820140 16820308 -145779622 - L1MC3 LINE L1 -7 7778 7603 1931 86 0 122 chrX 16820308 16820635 -145779295 - AluSq SINE Alu -16 287 1 2376 144 25 74 chrX 16820635 16820660 -145779270 - L1MC3 LINE L1 -182 7603 7578 2111 133 0 51 chrX 16820660 16821014 -145778916 + MER1B DNA MER1_type 2 337 0 2376 144 25 74 chrX 16821014 16821305 -145778625 - L1MC3 LINE L1 -207 7578 7317 272 170 0 0 chrX 16821372 16821419 -145778511 - L1MC3 LINE L1 -475 7310 7264 469 284 85 0 chrX 16821554 16821695 -145778235 - MIR SINE MIR -22 240 88 2045 209 17 41 chrX 16822251 16822697 -145777233 - L1MB8 LINE L1 -6 6172 5740 2005 95 0 11 chrX 16822697 16822971 -145776959 - AluSx SINE Alu -41 271 1 2045 209 17 41 chrX 16822971 16823059 -145776871 - L1MB8 LINE L1 -438 5740 5651 2073 130 0 0 chrX 16823423 16823731 -145776199 - AluSq SINE Alu -5 308 1 442 259 32 50 chrX 16823733 16824011 -145775919 - L1MB8 LINE L1 -814 5332 5060 3257 183 79 5 chrX 16824012 16824620 -145775310 - MER82 DNA MER2_type 0 653 1 912 272 54 48 chrX 16824708 16824882 -145775048 - L1MB8 LINE L1 -1228 4918 4747 1937 144 0 3 chrX 16824882 16825174 -145774756 - AluJb SINE Alu -18 294 4 912 272 54 48 chrX 16825174 16825440 -145774490 - L1MB8 LINE L1 -1399 4747 4475 498 321 53 42 chrX 16825649 16826004 -145773926 - L1MEd LINE L1 -5327 792 434 668 247 21 21 chrX 16826185 16826371 -145773559 - L1MEd LINE L1 -5920 199 14 850 141 0 0 chrX 16826582 16826703 -145773227 - FLAM_A SINE Alu -12 121 1 198 0 0 0 chrX 16826710 16826732 -145773198 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1926 128 17 7 chrX 16826854 16827152 -145772778 - AluSx SINE Alu -11 301 1 302 18 73 0 chrX 16827287 16827342 -145772588 + (TA)n Simple_repeat Simple_repeat 2 60 0 2297 58 0 10 chrX 16827342 16827635 -145772295 - AluY SINE Alu -21 290 1 1483 236 99 22 chrX 16827747 16828162 -145771768 - L1ME3A LINE L1 -39 6131 5685 442 283 135 60 chrX 16828158 16828347 -145771583 - L1ME1 LINE L1 -336 5830 5657 * 2505 95 52 3 chrX 16828347 16828694 -145771236 - THE1B LTR MaLR 0 364 1 442 283 135 60 chrX 16828694 16828769 -145771161 - L1ME1 LINE L1 -509 5657 5589 180 0 0 0 chrX 16828769 16828789 -145771141 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 442 283 135 60 chrX 16828789 16829057 -145770873 - L1ME1 LINE L1 -577 5589 5260 2193 106 3 0 chrX 16829070 16829372 -145770558 + AluSg SINE Alu 1 303 -7 1845 156 7 7 chrX 16829450 16829758 -145770172 + MER49 LTR ERV1 5 312 -611 591 89 13 0 chrX 16829759 16829838 -145770092 + AluSp SINE Alu 2 81 -231 2408 53 7 0 chrX 16829839 16830141 -145769789 - AluY SINE Alu -7 304 1 1741 65 4 9 chrX 16830141 16830370 -145769560 + AluSp SINE Alu 67 294 -19 935 152 33 65 chrX 16830371 16830555 -145769375 + MER49 LTR ERV1 301 478 -445 680 120 93 42 chrX 16830542 16830732 -145769198 + MER49 LTR ERV1 587 890 -33 * 2047 127 0 16 chrX 16830735 16831090 -145768840 + AluSx SINE Alu 3 352 0 320 241 0 0 chrX 16831287 16831366 -145768564 - LTR58 LTR ERV1 -230 449 371 3889 143 23 62 chrX 16831698 16832278 -145767652 + MER50 LTR ERV1 1 602 -132 1784 157 4 0 chrX 16832278 16832585 -145767345 - AluSx SINE Alu 0 308 1 3889 143 23 62 chrX 16832585 16832596 -145767334 + MER50 LTR ERV1 602 612 -122 2649 13 0 0 chrX 16832596 16832896 -145767034 - AluY SINE Alu -11 300 1 3889 143 23 62 chrX 16832896 16833042 -145766888 + MER50 LTR ERV1 612 711 -23 275 318 31 75 chrX 16833050 16833112 -145766818 - L1MDa LINE L1 -1905 4635 4572 1085 169 0 0 chrX 16833112 16833301 -145766629 + MER53 DNA DNA 1 189 0 275 318 31 75 chrX 16833301 16833373 -145766557 - L1MDa LINE L1 -1968 4572 4498 366 226 132 31 chrX 16833373 16833420 -145766510 - MER5B DNA MER1_type -3 175 134 221 0 35 0 chrX 16833420 16833449 -145766481 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 366 226 132 31 chrX 16833449 16833560 -145766370 - MER5B DNA MER1_type -44 134 1 275 318 31 75 chrX 16833560 16833745 -145766185 - L1MDa LINE L1 -2042 4498 4329 1724 108 69 86 chrX 16833776 16833956 -145765974 + LTR23 LTR ERV1 1 182 -255 1842 143 7 3 chrX 16833956 16834256 -145765674 - AluJb SINE Alu -11 301 1 1724 108 69 86 chrX 16834256 16834375 -145765555 + LTR23 LTR ERV1 182 296 -141 2321 45 7 16 chrX 16834375 16834683 -145765247 + AluY SINE Alu 1 305 -6 1724 108 69 86 chrX 16834683 16834742 -145765188 + LTR23 LTR ERV1 296 354 -83 947 123 20 113 chrX 16834743 16834946 -145764984 + MER4E LTR ERV1 1 184 -595 2205 72 3 7 chrX 16835027 16835339 -145764591 + AluY SINE Alu 1 311 0 3771 136 19 28 chrX 16836320 16836937 -145762993 + MER4E LTR ERV1 168 779 0 411 159 29 0 chrX 16836937 16837000 -145762930 + LTR23 LTR ERV1 352 416 -21 926 128 0 8 chrX 16837002 16837135 -145762795 + FLAM_C SINE Alu 2 133 0 296 263 47 96 chrX 16837232 16837455 -145762475 - L1MDa LINE L1 -2358 4182 3966 506 198 30 0 chrX 16837455 16837556 -145762374 + MER5A DNA MER1_type 9 112 -77 204 187 286 22 chrX 16837490 16837581 -145762349 - MER5A DNA MER1_type -32 157 43 * 1611 290 117 59 chrX 16837739 16837951 -145761979 - L1MDa LINE L1 -2697 3843 3645 2093 90 3 60 chrX 16837951 16838283 -145761647 - AluSp SINE Alu 0 313 1 1611 290 117 59 chrX 16838283 16838390 -145761540 - L1MDa LINE L1 -2895 3645 3546 1892 51 0 4 chrX 16838390 16838626 -145761304 - AluY SINE Alu -76 235 1 1611 290 117 59 chrX 16838626 16838805 -145761125 - L1MDa LINE L1 -2994 3546 3379 2255 88 3 0 chrX 16838805 16839111 -145760819 - AluY SINE Alu -4 307 1 1611 290 117 59 chrX 16839111 16839450 -145760480 - L1MDa LINE L1 -3161 3379 3061 2118 111 0 0 chrX 16839450 16839747 -145760183 + AluSx SINE Alu 1 297 -15 1611 290 117 59 chrX 16839747 16840306 -145759624 - L1MDa LINE L1 -3479 3061 2351 2183 124 0 0 chrX 16840411 16840717 -145759213 - AluSx SINE Alu -6 306 1 2559 92 6 3 chrX 16840797 16841134 -145758796 + THE1B LTR MaLR 27 364 0 620 229 126 17 chrX 16842239 16842414 -145757516 - MIR SINE MIR -44 218 25 500 252 8 0 chrX 16843662 16843793 -145756137 + MER53 DNA DNA 23 154 -35 1338 121 5 5 chrX 16843793 16843992 -145755938 - AluSg/x SINE Alu -20 292 94 313 133 0 0 chrX 16843994 16844039 -145755891 - Alu SINE Alu -255 45 1 295 145 0 81 chrX 16844038 16844062 -145755868 - MER53 DNA DNA -132 57 33 * 2280 94 0 7 chrX 16844062 16844371 -145755559 - AluSx SINE Alu -5 307 1 295 145 0 81 chrX 16844371 16844408 -145755522 - MER53 DNA DNA -156 33 1 205 343 151 17 chrX 16844410 16844582 -145755348 + MIR SINE MIR 25 219 -43 591 303 71 17 chrX 16844597 16845003 -145754927 + LTR16A1 LTR ERVL 1 428 -29 239 85 17 51 chrX 16845593 16845652 -145754278 + (TTCCC)n Simple_repeat Simple_repeat 1 57 0 1859 124 4 4 chrX 16845656 16845931 -145753999 - AluSx SINE Alu -37 275 1 289 302 47 39 chrX 16845931 16846060 -145753870 + MIR SINE MIR 61 190 -72 324 128 0 0 chrX 16846256 16846303 -145753627 - FLAM_A SINE Alu -2 131 85 1297 182 0 0 chrX 16846303 16846523 -145753407 - AluJo SINE Alu -92 220 1 791 157 90 30 chrX 16847203 16847358 -145752572 - L1MA9 LINE L1 -327 5985 5818 2156 93 0 3 chrX 16847358 16847647 -145752283 - AluSx SINE Alu -13 299 12 810 146 0 0 chrX 16847807 16847937 -145751993 - AluJb SINE Alu -45 267 138 531 330 98 12 chrX 16847947 16848274 -145751656 + L2 LINE L2 2952 3306 -7 399 264 24 24 chrX 16848281 16848406 -145751524 - MIR SINE MIR -131 131 7 1790 151 0 26 chrX 16849142 16849453 -145750477 - AluJb SINE Alu -9 303 1 663 354 26 18 chrX 16849459 16849951 -145749979 - L1M4 LINE L1 -3399 2747 2252 2211 101 0 0 chrX 16850248 16850546 -145749384 - AluSx SINE Alu -14 298 1 2120 89 0 3 chrX 16850703 16850995 -145748935 + AluSg SINE Alu 1 291 -19 193 71 0 48 chrX 16850995 16851037 -145748893 + (TA)n Simple_repeat Simple_repeat 2 41 0 227 67 0 107 chrX 16851139 16851288 -145748642 + (TA)n Simple_repeat Simple_repeat 1 133 0 346 56 11 101 chrX 16851301 16851479 -145748451 + (TA)n Simple_repeat Simple_repeat 2 163 0 422 183 0 0 chrX 16851537 16851608 -145748322 + AluJ/FLAM SINE Alu 2 72 -240 632 239 80 42 chrX 16851802 16852066 -145747864 + MLT1L LTR MaLR 3 276 -339 242 224 0 45 chrX 16852080 16852147 -145747783 + GA-rich Low_complexity Low_complexity 1 64 0 909 265 87 10 chrX 16852151 16852449 -145747481 + MLT1L LTR MaLR 287 607 -8 1572 149 3 65 chrX 16852504 16852812 -145747118 - AluJo SINE Alu -23 289 1 346 263 35 26 chrX 16853213 16853327 -145746603 - MIR SINE MIR -7 255 141 295 175 113 38 chrX 16853980 16854060 -145745870 - MIR SINE MIR -109 153 68 427 346 48 24 chrX 16854221 16854429 -145745501 - MIR SINE MIR -25 237 25 300 230 58 24 chrX 16854958 16855082 -145744848 + MIR SINE MIR 36 164 -66 244 331 58 19 chrX 16856202 16856356 -145743574 + L2 LINE L2 2903 3062 -251 569 288 197 25 chrX 16858171 16858260 -145741670 + LTR67 LTR ERVL 33 105 -452 1785 170 28 0 chrX 16858260 16858549 -145741381 - AluJb SINE Alu -15 297 1 569 288 197 25 chrX 16858549 16858900 -145741030 + LTR67 LTR ERVL 105 549 -8 237 224 26 53 chrX 16860357 16860433 -145739497 - MIR SINE MIR -122 140 67 825 200 42 47 chrX 16866421 16866636 -145733294 + MER20 DNA MER1_type 3 216 -3 201 214 0 39 chrX 16867175 16867241 -145732689 + MIR SINE MIR 11 73 -135 403 209 174 0 chrX 16870363 16870478 -145729452 - MER112 DNA MER1_type -8 252 118 180 0 0 0 chrX 16870582 16870602 -145729328 + (T)n Simple_repeat Simple_repeat 1 20 0 2377 92 0 0 chrX 16871421 16871715 -145728215 - AluSg SINE Alu -16 294 1 1975 138 21 3 chrX 16871718 16872007 -145727923 - AluJb SINE Alu -14 298 5 2450 88 3 0 chrX 16872054 16872361 -145727569 + AluSp SINE Alu 1 308 -5 933 120 0 47 chrX 16872370 16872520 -145727410 + FLAM_C SINE Alu 1 143 0 254 248 109 20 chrX 16872716 16872817 -145727113 - L1ME4a LINE L1 -208 5913 5804 2296 79 0 14 chrX 16874757 16875049 -145724881 - AluSg SINE Alu -22 288 1 1752 190 40 3 chrX 16878018 16878370 -145721560 + MLT1A1 LTR MaLR 1 365 0 300 301 0 12 chrX 16878733 16878816 -145721114 + L1ME3A LINE L1 5908 5989 -181 667 318 47 50 chrX 16878901 16879416 -145720514 + MER34 LTR ERV1 1 513 -29 21 0 0 0 chrX 16879684 16879705 -145720225 + AT_rich Low_complexity Low_complexity 1 21 0 2093 123 20 10 chrX 16879772 16880064 -145719866 + AluJb SINE Alu 1 295 -17 2306 97 0 13 chrX 16880585 16880747 -145719183 - AluSx SINE Alu -17 295 137 2327 110 3 0 chrX 16880747 16881047 -145718883 - AluSp SINE Alu -12 301 1 2306 97 0 13 chrX 16881047 16881183 -145718747 - AluSx SINE Alu -175 137 1 433 296 131 28 chrX 16881380 16881556 -145718374 - MIR3 SINE MIR -7 201 8 1605 134 58 0 chrX 16881798 16882059 -145717871 - Tigger3b DNA MER2_type 0 1232 957 988 149 0 0 chrX 16882059 16882200 -145717730 + FLAM_C SINE Alu 1 141 -2 2233 107 13 0 chrX 16882205 16882504 -145717426 + AluSp SINE Alu 1 303 -10 425 294 30 23 chrX 16882607 16882797 -145717133 + LTR1 LTR ERV1 88 425 -546 * 1450 197 55 124 chrX 16882781 16883474 -145716456 + LTR1B LTR ERV1 314 1020 0 2131 153 70 33 chrX 16883475 16883964 -145715966 + MER4-int LTR ERV1 5863 6369 -229 2704 195 53 62 chrX 16884088 16884901 -145715029 - MER21A LTR ERV1 -9 922 178 409 165 126 39 chrX 16884970 16885097 -145714833 - MER21A LTR ERV1 -767 164 27 183 296 37 12 chrX 16885671 16885752 -145714178 - MIR3 SINE MIR -5 203 121 210 381 29 0 chrX 16886018 16886123 -145713807 - MIR SINE MIR -85 123 16 408 222 178 22 chrX 16887782 16887917 -145712013 - MER5A DNA MER1_type 0 189 34 4093 147 102 9 chrX 16888451 16888679 -145711251 - Tigger3b DNA MER2_type -2140 888 683 2260 99 27 0 chrX 16888679 16888972 -145710958 - AluSg SINE Alu -9 301 1 4093 147 102 9 chrX 16888972 16889555 -145710375 - Tigger3b DNA MER2_type -2345 683 1 992 315 25 13 chrX 16889560 16889954 -145709976 + HAL1 LINE L1 84 482 -2025 258 288 135 79 chrX 16890114 16890329 -145709601 + HAL1 LINE L1 765 991 -1516 718 142 0 0 chrX 16890335 16890441 -145709489 + AluSq/x SINE Alu 2 107 -206 2049 139 16 0 chrX 16890962 16891265 -145708665 - AluJb SINE Alu -4 308 1 978 127 77 82 chrX 16891303 16891523 -145708407 - MER20 DNA MER1_type 0 219 1 2113 134 0 3 chrX 16892075 16892374 -145707556 + AluSx SINE Alu 1 298 -14 512 238 95 8 chrX 16892650 16892776 -145707154 + MIR SINE MIR 62 198 -64 250 108 0 0 chrX 16893482 16893519 -145706411 + L1PA13 LINE L1 1538 1574 -5213 216 0 0 0 chrX 16893519 16893543 -145706387 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 640 290 168 10 chrX 16893586 16893889 -145706041 + L3 LINE CR1 944 1294 -283 1140 233 113 43 chrX 16894044 16894487 -145705443 + MLT1K LTR MaLR 1 474 -2 294 254 136 70 chrX 16894761 16895204 -145704726 + L2 LINE L2 2614 3083 -189 2420 98 0 13 chrX 16896944 16897259 -145702671 - AluSx SINE Alu -1 311 1 287 335 19 31 chrX 16897697 16897954 -145701976 - L2 LINE L2 -613 2701 2448 2041 102 0 66 chrX 16898372 16898676 -145701254 + AluSx SINE Alu 5 288 -24 2686 108 38 17 chrX 16898695 16899112 -145700818 + MSTB LTR MaLR 1 426 0 2062 148 0 3 chrX 16899112 16899410 -145700520 - AluJo SINE Alu -15 297 1 1038 221 81 68 chrX 16899414 16899496 -145700434 + HAL1 LINE L1 1499 1578 -929 2246 124 0 0 chrX 16899496 16899794 -145700136 - AluSx SINE Alu -14 298 1 1038 221 81 68 chrX 16899794 16900095 -145699835 + HAL1 LINE L1 1578 1887 -620 1411 272 169 13 chrX 16900175 16900877 -145699053 + HAL1 LINE L1 1690 2501 -6 2098 138 0 25 chrX 16901658 16902014 -145697916 + AluJo SINE Alu 1 348 0 2112 116 27 0 chrX 16903383 16903676 -145696254 + AluSx SINE Alu 1 301 -11 25 31 0 0 chrX 16903806 16903838 -145696092 + AT_rich Low_complexity Low_complexity 1 32 0 2427 91 3 0 chrX 16904200 16904496 -145695434 + AluSq SINE Alu 1 297 -16 1632 134 67 16 chrX 16904678 16904992 -145694938 + L1MB2 LINE L1 5842 6171 0 2141 123 34 0 chrX 16905165 16905457 -145694473 - AluSx SINE Alu -10 302 1 209 220 68 17 chrX 16905560 16905619 -145694311 + L3 LINE CR1 1401 1462 -115 226 228 35 0 chrX 16907607 16907664 -145692266 - L2 LINE L2 -10 3262 3204 274 297 61 68 chrX 16911676 16911782 -145688148 - MIR SINE MIR 0 262 156 3092 134 125 10 chrX 16911782 16912365 -145687565 + MER39B LTR ERV1 3 652 -1 274 297 61 68 chrX 16912365 16912406 -145687524 - MIR SINE MIR -106 156 116 512 206 63 0 chrX 16912649 16912775 -145687155 - MIR3 SINE MIR -13 195 62 251 217 159 0 chrX 16914780 16914849 -145685081 + L1ME4a LINE L1 5975 6054 -67 2271 118 0 0 chrX 16914951 16915247 -145684683 + AluSx SINE Alu 1 296 -16 217 313 52 17 chrX 16915473 16915588 -145684342 + L2 LINE L2 3140 3258 -14 473 212 151 7 chrX 16915634 16915780 -145684150 + MER91A DNA MER1_type 30 196 0 2240 101 0 42 chrX 16917728 16918035 -145681895 - AluSx SINE Alu -18 294 1 1027 113 27 7 chrX 16918774 16918924 -145681006 + L1MA4A LINE L1 5800 5952 -351 231 321 64 0 chrX 16919347 16919456 -145680474 + L2 LINE L2 3196 3311 -2 415 348 137 14 chrX 16919464 16920022 -145679908 - L2 LINE L2 -10 3262 2616 1208 230 113 56 chrX 16920140 16920650 -145679280 + MLT1G1 LTR MaLR 23 595 0 1809 148 20 27 chrX 16921266 16921563 -145678367 - AluJo SINE Alu -17 295 1 2563 62 0 0 chrX 16921573 16921878 -145678052 - AluY SINE Alu -6 305 1 293 180 22 67 chrX 16922913 16923002 -145676928 + LTR33A LTR ERVL 439 523 0 296 241 38 25 chrX 16924546 16924625 -145675305 - MIR SINE MIR -179 83 4 1873 158 0 16 chrX 16924648 16924951 -145674979 + AluJo SINE Alu 3 300 -12 189 229 16 66 chrX 16925182 16925243 -145674687 + L2 LINE L2 3205 3262 -10 907 135 0 0 chrX 16925728 16925861 -145674069 - FLAM_C SINE Alu 0 133 1 201 39 0 0 chrX 16925998 16926024 -145673906 + (TG)n Simple_repeat Simple_repeat 1 26 0 391 262 12 0 chrX 16926262 16926346 -145673584 + Charlie8 DNA MER1_type 9 93 -2324 297 310 7 28 chrX 16927789 16927934 -145671996 - L2 LINE L2 -649 2665 2524 1012 146 118 5 chrX 16928240 16928452 -145671478 - Charlie1a DNA MER1_type 0 1455 1220 993 110 0 7 chrX 16928471 16928607 -145671323 + AluJo SINE Alu 1 135 -177 5245 175 63 51 chrX 16928608 16929197 -145670733 - Charlie1a DNA MER1_type -1527 1234 654 2243 81 20 14 chrX 16929197 16929493 -145670437 + AluSq SINE Alu 2 299 -14 5245 175 63 51 chrX 16929493 16930119 -145669811 - Charlie1a DNA MER1_type -2107 654 4 646 282 65 72 chrX 16930244 16930297 -145669633 - L1ME3 LINE L1 -284 5878 5826 1127 103 72 10 chrX 16930297 16930318 -145669612 - L1MA8 LINE L1 -4 6287 6269 1847 160 10 0 chrX 16930318 16930606 -145669324 + AluJb SINE Alu 1 291 -21 1127 103 72 10 chrX 16930606 16930778 -145669152 - L1MA8 LINE L1 -22 6269 6082 646 282 65 72 chrX 16930778 16931128 -145668802 - L1ME3 LINE L1 -336 5826 5537 1146 270 84 10 chrX 16931128 16931543 -145668387 + MLT1J1 LTR MaLR 1 446 0 646 282 65 72 chrX 16931543 16931697 -145668233 - L1ME3 LINE L1 -625 5537 5383 1284 166 5 27 chrX 16932045 16932268 -145667662 - MLT1F1 LTR MaLR -8 559 342 1928 276 153 35 chrX 16932272 16933374 -145666556 - L1ME3 LINE L1 -923 5223 3904 2389 65 7 14 chrX 16933374 16933665 -145666265 - AluSx SINE Alu -23 289 1 1928 276 153 35 chrX 16933665 16934024 -145665906 - L1ME3 LINE L1 -2242 3904 3589 2319 193 101 205 chrX 16934045 16934868 -145665062 + L2 LINE L2 1071 1978 -1336 1683 202 38 17 chrX 16934868 16935214 -145664716 - MLT1A2 LTR MaLR -2 372 20 2319 193 101 205 chrX 16935214 16935503 -145664427 + L2 LINE L2 1978 2295 -1019 2416 105 11 35 chrX 16935503 16935876 -145664054 + THE1B LTR MaLR 1 364 0 2319 193 101 205 chrX 16935876 16936325 -145663605 + L2 LINE L2 2295 2780 -534 2479 97 0 0 chrX 16936325 16936635 -145663295 - AluSx SINE Alu -2 310 1 1589 119 107 16 chrX 16936826 16937136 -145662794 + MER44D DNA MER2_type 2 609 0 1389 294 51 44 chrX 16937178 16938191 -145661739 - L1ME3 LINE L1 -2897 3249 2230 2227 82 18 0 chrX 16938240 16938540 -145661390 + AluSx SINE Alu 1 305 0 313 79 0 0 chrX 16938577 16938615 -145661315 - tRNA-Asp-GAC tRNA tRNA -37 38 1 2382 75 0 13 chrX 16938792 16939098 -145660832 + AluSc SINE Alu 1 302 -7 2016 122 21 0 chrX 16939218 16939531 -145660399 + AluSx SINE Alu 1 319 0 180 125 47 16 chrX 16940132 16940196 -145659734 + (TTAA)n Simple_repeat Simple_repeat 3 68 0 3695 194 57 53 chrX 16940250 16941215 -145658715 + LTR5 LTR ERVK 1 969 0 270 0 0 0 chrX 16941430 16941466 -145658464 - L1MB3 LINE L1 0 6183 6148 2238 102 14 0 chrX 16941863 16942147 -145657783 - AluSx SINE Alu -24 288 1 221 333 45 26 chrX 16942578 16942734 -145657196 + L2 LINE L2 2905 3063 -209 1018 187 13 40 chrX 16942734 16942959 -145656971 - MER20 DNA MER1_type 0 219 1 1011 206 23 23 chrX 16942969 16943187 -145656743 + MER58A DNA MER1_type 3 220 -4 3645 104 9 2 chrX 16943538 16944103 -145655827 + L1PB1 LINE L1 5608 6176 0 2101 114 0 0 chrX 16944111 16944428 -145655502 + AluSx SINE Alu 1 317 0 225 211 0 0 chrX 16944918 16944970 -145654960 + GA-rich Low_complexity Low_complexity 3 54 0 238 251 215 12 chrX 16945433 16945596 -145654334 + L1ME4a LINE L1 5690 5885 -236 258 197 0 28 chrX 16945694 16945765 -145654165 + L1ME4a LINE L1 6047 6115 -6 1008 202 71 79 chrX 16946570 16946943 -145652987 + MLT1A1 LTR MaLR 1 426 0 186 209 0 0 chrX 16947486 16947529 -145652401 + GA-rich Low_complexity Low_complexity 2 44 0 1470 156 90 35 chrX 16947983 16948271 -145651659 + AluJo SINE Alu 1 304 -8 205 213 180 0 chrX 16948658 16948719 -145651211 + MIR3 SINE MIR 129 200 -8 719 309 99 22 chrX 16949123 16949537 -145650393 - MARNA DNA Mariner -132 454 9 2305 92 3 0 chrX 16949624 16949919 -145650011 + AluSx SINE Alu 1 296 -16 567 268 22 22 chrX 16950408 16950587 -145649343 + MIR3 SINE MIR 15 193 -15 314 320 22 39 chrX 16950721 16950899 -145649031 + MIR3 SINE MIR 16 190 -18 2395 168 37 14 chrX 16950947 16951435 -145648495 + L1MB8 LINE L1 5676 6174 -4 2270 108 0 0 chrX 16951961 16952248 -145647682 + AluSx SINE Alu 1 287 -25 2263 115 0 3 chrX 16952819 16953123 -145646807 - AluSq SINE Alu -10 303 1 198 0 0 0 chrX 16953658 16953680 -145646250 + (TA)n Simple_repeat Simple_repeat 1 22 0 25 31 0 0 chrX 16953704 16953736 -145646194 + AT_rich Low_complexity Low_complexity 1 32 0 2331 101 0 0 chrX 16953782 16954079 -145645851 - AluSq SINE Alu -16 297 1 289 295 33 0 chrX 16954108 16954230 -145645700 - L1ME4a LINE L1 -202 5919 5794 230 214 0 0 chrX 16954335 16954377 -145645553 - L1ME4a LINE L1 -459 5662 5621 272 246 0 91 chrX 16954438 16954548 -145645382 - L1ME4a LINE L1 -675 5489 5390 213 39 0 0 chrX 16954624 16954650 -145645280 + (TG)n Simple_repeat Simple_repeat 1 26 0 2127 122 0 0 chrX 16954650 16954929 -145645001 - AluSx SINE Alu -33 279 1 642 220 129 35 chrX 16954992 16955224 -145644706 + MIR SINE MIR 9 262 0 630 301 0 0 chrX 16956071 16956234 -145643696 - MLT1I LTR MaLR -24 385 223 2481 126 38 43 chrX 16956246 16956667 -145643263 - MSTA LTR MaLR -9 419 1 690 255 54 0 chrX 16956767 16956951 -145642979 + L1M4 LINE L1 4778 4971 -1175 419 227 0 0 chrX 16956952 16957027 -145642903 - L1ME4a LINE L1 -1566 4580 4506 24 32 0 0 chrX 16957131 16957162 -145642768 + AT_rich Low_complexity Low_complexity 1 31 0 2356 96 0 7 chrX 16957297 16957600 -145642330 + AluSg SINE Alu 1 301 -9 313 225 127 28 chrX 16958792 16958934 -145640996 - MIR SINE MIR -69 193 38 1145 237 37 19 chrX 16959188 16959509 -145640421 + MER46C DNA MER2_type 6 332 -6 2207 116 0 3 chrX 16959510 16959821 -145640109 + AluSx SINE Alu 1 310 -2 205 132 53 0 chrX 16961095 16961133 -145638797 + G-rich Low_complexity Low_complexity 5 44 0 222 254 0 14 chrX 16961622 16961693 -145638237 + C-rich Low_complexity Low_complexity 5 74 0 644 274 49 26 chrX 16962396 16962622 -145637308 + MIR SINE MIR 19 249 -13 232 284 0 40 chrX 16962746 16962820 -145637110 + L2 LINE L2 3202 3272 0 28 29 0 0 chrX 16964149 16964184 -145635746 + AT_rich Low_complexity Low_complexity 1 35 0 2395 116 0 0 chrX 16964271 16964582 -145635348 + AluSx SINE Alu 1 311 -1 671 168 0 16 chrX 16964868 16964993 -145634937 - FLAM_A SINE Alu -7 135 13 192 40 0 0 chrX 16965093 16965118 -145634812 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1709 177 3 3 chrX 16965885 16966167 -145633763 - AluJo SINE Alu -30 282 1 549 271 147 12 chrX 16967006 16967176 -145632754 + MER91A DNA MER1_type 4 196 0 2190 89 13 36 chrX 16968554 16968856 -145631074 + AluSq SINE Alu 1 295 -18 677 182 20 27 chrX 17020533 17020681 -145579249 - AluJb SINE Alu -165 147 1 871 280 37 5 chrX 17020681 17020895 -145579035 - MIR SINE MIR -38 224 4 2151 259 61 11 chrX 17020937 17021575 -145578355 + L1ME3A LINE L1 5501 6170 0 2073 227 129 6 chrX 17022856 17023375 -145576555 - L1ME1 LINE L1 -3 6163 5581 1663 173 0 13 chrX 17023379 17023691 -145576239 + AluJo SINE Alu 3 310 -2 372 275 49 57 chrX 17023721 17023968 -145575962 - L1ME1 LINE L1 -1801 4345 4101 1886 115 14 7 chrX 17024231 17024526 -145575404 - AluSx SINE Alu -13 299 3 2402 48 7 0 chrX 17024691 17024982 -145574948 - L1PA7 LINE L1 -28 6126 5834 270 281 62 0 chrX 17025009 17025105 -145574825 - L1ME LINE L1 -335 5835 5734 513 165 0 0 chrX 17025189 17025268 -145574662 + FLAM_A SINE Alu 43 121 -21 1032 103 0 0 chrX 17025315 17025451 -145574479 - AluSq/x SINE Alu -176 136 1 2162 113 0 13 chrX 17025461 17025771 -145574159 - AluSx SINE Alu -5 307 2 3228 127 23 8 chrX 17026804 17027333 -145572597 - MER41B LTR ERV1 0 635 99 598 94 198 0 chrX 17028681 17028777 -145571153 - MER45A DNA AcHobo -1 177 63 3151 140 47 45 chrX 17028870 17029464 -145570466 + LTR49 LTR ERV1 1 595 0 515 156 31 0 chrX 17029622 17029718 -145570212 + MER5A DNA MER1_type 12 110 -79 1202 174 17 13 chrX 17031640 17031870 -145568060 - MER58B DNA MER1_type 0 341 111 2336 67 0 10 chrX 17032070 17032382 -145567548 + AluY SINE Alu 1 309 -2 1520 153 7 54 chrX 17032402 17032696 -145567234 - AluJo SINE Alu -30 282 3 1938 126 3 0 chrX 17032892 17033177 -145566753 + AluSx SINE Alu 1 286 -26 225 0 0 0 chrX 17033706 17033731 -145566199 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 1828 107 11 0 chrX 17033777 17034040 -145565890 + AluSq SINE Alu 1 266 -47 2197 122 0 0 chrX 17035597 17035909 -145564021 + AluSx SINE Alu 1 312 0 185 0 0 39 chrX 17035913 17035939 -145563991 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 423 200 11 67 chrX 17036099 17036189 -145563741 + MIR SINE MIR 7 91 -171 337 323 173 13 chrX 17036563 17036788 -145563142 + MIR SINE MIR 2 260 -2 320 175 311 0 chrX 17036948 17037051 -145562879 + MIR3 SINE MIR 46 180 -28 196 271 57 14 chrX 17037134 17037204 -145562726 - MER5A DNA MER1_type -10 179 107 629 188 214 16 chrX 17037205 17037397 -145562533 + MER33 DNA MER1_type 3 232 -92 1910 144 3 0 chrX 17037482 17037773 -145562157 + AluJb SINE Alu 1 292 -20 225 0 0 0 chrX 17037773 17037798 -145562132 + (TA)n Simple_repeat Simple_repeat 1 25 0 537 186 25 0 chrX 17037826 17037944 -145561986 + MER33 DNA MER1_type 243 363 0 227 294 50 22 chrX 17038962 17038997 -145560933 + L1MDa LINE L1 1910 1943 -4597 1084 138 0 126 chrX 17038997 17039050 -145560880 - MER6B DNA MER2_type -655 210 152 2061 123 3 0 chrX 17039050 17039358 -145560572 + AluSg SINE Alu 1 309 -1 1084 138 0 126 chrX 17039358 17039543 -145560387 - MER6B DNA MER2_type -713 152 2 227 294 50 22 chrX 17039543 17039687 -145560243 + L1MDa LINE L1 1943 2094 -4446 1879 123 7 10 chrX 17040439 17040740 -145559190 + AluSx SINE Alu 1 300 -12 227 195 0 0 chrX 17040839 17040880 -145559050 - MIR SINE MIR -54 208 168 349 277 42 8 chrX 17040883 17041002 -145558928 + MER94 DNA DNA 1 123 -11 577 258 50 31 chrX 17041013 17041172 -145558758 - MIR SINE MIR -92 170 9 1896 154 3 0 chrX 17041288 17041586 -145558344 + AluJb SINE Alu 1 299 -13 214 278 52 31 chrX 17041591 17041688 -145558242 + MIR SINE MIR 70 168 -94 1077 204 51 19 chrX 17041810 17042026 -145557904 - MER58A DNA MER1_type -1 223 1 668 303 31 31 chrX 17042039 17042293 -145557637 + L2 LINE L2 3060 3313 0 387 0 0 0 chrX 17042637 17042680 -145557250 + (TG)n Simple_repeat Simple_repeat 2 44 0 1989 138 0 0 chrX 17042954 17043251 -145556679 + AluJb SINE Alu 1 297 -15 594 206 122 69 chrX 17043415 17043604 -145556326 - LTR16C LTR ERVL -181 310 112 237 33 0 0 chrX 17043786 17043816 -145556114 + (TG)n Simple_repeat Simple_repeat 2 31 0 2263 81 0 3 chrX 17043938 17044234 -145555696 + AluSx SINE Alu 1 295 -17 365 242 191 38 chrX 17044419 17044576 -145555354 + MER5A DNA MER1_type 9 189 0 186 71 0 0 chrX 17044927 17044955 -145554975 + (T)n Simple_repeat Simple_repeat 1 28 0 2170 70 22 38 chrX 17045120 17045435 -145554495 + AluY SINE Alu 1 310 -1 471 152 63 0 chrX 17045486 17045565 -145554365 + AluJ/FLAM SINE Alu 1 84 -228 1405 256 109 10 chrX 17045681 17046202 -145553728 + L1ME3A LINE L1 5600 6167 -3 602 150 0 0 chrX 17046266 17046366 -145553564 + FLAM_A SINE Alu 43 142 0 317 239 0 102 chrX 17047389 17047477 -145552453 - L2 LINE L2 -2 3270 3192 2092 127 0 9 chrX 17047702 17048017 -145551913 + AluSx SINE Alu 1 312 0 1295 278 238 17 chrX 17048189 17049114 -145550816 - L2 LINE L2 -580 2734 1606 2230 245 70 66 chrX 17049135 17049364 -145550566 + L1MC4 LINE L1 6985 7211 -831 216 0 0 0 chrX 17049364 17049388 -145550542 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1738 145 3 7 chrX 17049391 17049673 -145550257 - AluJo SINE Alu -31 281 1 2230 245 70 66 chrX 17049673 17049967 -145549963 + L1MC4 LINE L1 7212 7503 -539 2189 91 0 34 chrX 17049967 17050287 -145549643 + AluSc SINE Alu 1 309 0 2230 245 70 66 chrX 17050287 17050401 -145549529 + L1MC4 LINE L1 7503 7615 -427 1949 91 0 0 chrX 17050401 17050653 -145549277 + AluSx SINE Alu 6 257 -55 189 0 0 0 chrX 17050656 17050677 -145549253 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2230 245 70 66 chrX 17050677 17051081 -145548849 + L1MC4 LINE L1 7616 8041 -1 2159 101 0 16 chrX 17051087 17051404 -145548526 + AluSx SINE Alu 1 312 0 344 345 8 25 chrX 17051614 17051733 -145548197 - L2 LINE L2 -1977 1337 1221 329 236 22 34 chrX 17051720 17051809 -145548121 - MER5B DNA MER1_type -90 88 1 * 1299 142 4 36 chrX 17051817 17052042 -145547888 - MER20 DNA MER1_type 0 219 2 1119 205 87 0 chrX 17052115 17052344 -145547586 + MIR SINE MIR 14 262 0 689 260 56 52 chrX 17052533 17052802 -145547128 - L2 LINE L2 0 3313 3044 989 127 20 0 chrX 17052980 17053130 -145546800 + AluSx SINE Alu 6 158 -154 610 97 0 43 chrX 17053130 17053223 -145546707 + AluJo/FRAM SINE Alu 207 295 -17 1703 160 3 17 chrX 17053228 17053528 -145546402 + AluJo SINE Alu 1 296 -16 1924 133 13 0 chrX 17053530 17053831 -145546099 + AluSx SINE Alu 3 307 -5 239 309 75 11 chrX 17053876 17053970 -145545960 - L2 LINE L2 -627 2687 2588 207 125 0 0 chrX 17055346 17055386 -145544544 + (T)n Simple_repeat Simple_repeat 1 40 0 326 194 0 117 chrX 17055597 17055648 -145544282 + MER103 DNA DNA 7 42 -124 2296 110 7 0 chrX 17055648 17055949 -145543981 - AluSx SINE Alu -9 303 1 326 194 0 117 chrX 17055949 17056000 -145543930 + MER103 DNA DNA 42 97 -69 543 228 0 2 chrX 17056011 17056156 -145543774 - MLT1I LTR MaLR 0 409 235 3880 179 56 13 chrX 17056178 17056948 -145542982 - L1ME2 LINE L1 -21 6143 5341 679 289 16 11 chrX 17056948 17057138 -145542792 - MLT1I LTR MaLR -162 247 57 2744 230 70 110 chrX 17057687 17058953 -145540977 + L1MC4a LINE L1 5692 6906 -902 908 159 0 37 chrX 17059097 17059260 -145540670 - AluJb SINE Alu -12 300 144 311 100 0 0 chrX 17059260 17059300 -145540630 - Alu SINE Alu -260 40 1 1115 265 55 11 chrX 17059300 17059647 -145540283 + L1MC4 LINE L1 7159 7520 -522 186 189 0 0 chrX 17059947 17059984 -145539946 + (TGGA)n Simple_repeat Simple_repeat 2 38 0 1862 221 98 113 chrX 17061030 17061907 -145538023 + MER45C DNA AcHobo 1 864 -89 671 178 0 0 chrX 17061933 17062040 -145537890 - FRAM SINE Alu -30 146 40 423 186 0 0 chrX 17062046 17062116 -145537814 + MER45C DNA AcHobo 882 951 -2 452 326 51 6 chrX 17063642 17063820 -145536110 - MIR SINE MIR -12 250 65 288 0 0 0 chrX 17064010 17064042 -145535888 + (CA)n Simple_repeat Simple_repeat 1 32 0 422 222 25 0 chrX 17064868 17064949 -145534981 + L2 LINE L2 3190 3272 0 1740 174 7 20 chrX 17064986 17065280 -145534650 - AluJo SINE Alu -21 291 2 799 208 53 5 chrX 17065315 17065522 -145534408 + L1M4 LINE L1 5132 5348 -798 234 214 0 0 chrX 17065524 17065566 -145534364 - AluJ/monomer SINE Alu -90 43 2 205 276 0 17 chrX 17065575 17065633 -145534297 - MIR SINE MIR -22 240 184 186 43 0 0 chrX 17066164 17066187 -145533743 + (T)n Simple_repeat Simple_repeat 1 23 0 256 253 23 0 chrX 17066250 17066337 -145533593 - L1M4 LINE L1 -2373 3773 3685 1575 44 0 6 chrX 17066350 17066533 -145533397 - L1PA4 LINE L1 0 6155 5974 1160 15 15 0 chrX 17066533 17066667 -145533263 + L1PA4 LINE L1 5828 5963 -192 1040 221 73 108 chrX 17067137 17067350 -145532580 - MLT1H1 LTR MaLR 0 555 336 2259 130 39 33 chrX 17067350 17067712 -145532218 + THE1B LTR MaLR 1 364 0 1040 221 73 108 chrX 17067712 17068073 -145531857 - MLT1H1 LTR MaLR -219 336 1 1720 115 8 28 chrX 17068452 17068732 -145531198 + AluSx SINE Alu 35 309 0 444 254 78 28 chrX 17068732 17068949 -145530981 - L1 LINE L1 -1818 4328 4101 1311 155 14 0 chrX 17068950 17069163 -145530767 + AluJo SINE Alu 86 301 -11 1122 261 76 43 chrX 17069179 17069708 -145530222 - L1 LINE L1 -2058 4088 3543 1333 254 57 30 chrX 17070005 17070536 -145529394 + L1PBa LINE L1 6 550 -6313 6249 140 20 14 chrX 17070646 17072272 -145527658 + L1PB1 LINE L1 4514 6150 -1 365 264 37 88 chrX 17072261 17072341 -145527589 + L1ME2 LINE L1 3259 3342 -2804 * 1753 95 0 0 chrX 17072341 17072563 -145527367 + AluSg/x SINE Alu 85 306 -6 365 264 37 88 chrX 17072563 17072777 -145527153 + L1ME2 LINE L1 3342 3538 -2608 1587 161 37 74 chrX 17072906 17073230 -145526700 - AluJo SINE Alu 0 312 1 2413 97 0 0 chrX 17073286 17073595 -145526335 + AluSg SINE Alu 1 309 -1 1570 237 78 58 chrX 17073631 17074349 -145525581 + L1ME2 LINE L1 5204 5951 -211 34 42 0 0 chrX 17074558 17074606 -145525324 + AT_rich Low_complexity Low_complexity 1 48 0 918 271 122 16 chrX 17074611 17075715 -145524215 + HAL1 LINE L1 1173 2474 -33 466 202 22 19 chrX 17075749 17075873 -145524057 + L1ME2 LINE L1 6040 6166 -4 347 231 54 97 chrX 17075912 17076098 -145523832 + L1MC4 LINE L1 7864 8041 -1 317 296 12 0 chrX 17076633 17076714 -145523216 - MIR SINE MIR -55 153 72 1974 157 36 22 chrX 17076943 17077300 -145522630 + L1MB5 LINE L1 5813 6174 0 523 219 22 15 chrX 17077300 17077437 -145522493 + L1MC4 LINE L1 7905 8042 0 523 89 9 107 chrX 17078177 17078289 -145521641 + L1MB2 LINE L1 6069 6169 -2 971 168 47 12 chrX 17078914 17079073 -145520857 + Charlie5 DNA MER1_type 34 186 -2399 2405 79 3 31 chrX 17079073 17079390 -145520540 - AluSx SINE Alu -4 308 1 971 168 47 12 chrX 17079390 17079471 -145520459 + Charlie5 DNA MER1_type 186 2585 0 282 321 38 19 chrX 17081635 17081741 -145518189 + MIR SINE MIR 126 233 -29 1064 152 0 18 chrX 17082426 17082597 -145517333 + FAM SINE Alu 1 168 -7 240 271 259 0 chrX 17082648 17082733 -145517197 + MIR SINE MIR 13 119 -143 283 290 40 24 chrX 17082750 17082876 -145517054 + MIR SINE MIR 56 146 -62 2229 94 0 0 chrX 17083239 17083547 -145516383 + AluSx SINE Alu 1 308 0 675 206 59 41 chrX 17083819 17083929 -145516001 + MER5B DNA MER1_type 2 118 -60 2306 117 3 0 chrX 17083929 17084237 -145515693 - AluSx SINE Alu -3 309 1 675 206 59 41 chrX 17084237 17084296 -145515634 + MER5B DNA MER1_type 118 174 -4 195 214 57 57 chrX 17084423 17084493 -145515437 - MIR3 SINE MIR -11 197 128 193 222 0 0 chrX 17084694 17084730 -145515200 - MIR SINE MIR -4 258 223 461 253 86 19 chrX 17086833 17086995 -145512935 + MIR SINE MIR 73 245 -17 187 377 30 36 chrX 17087070 17087237 -145512693 - L2 LINE L2 -108 3164 2999 892 295 99 18 chrX 17087246 17087639 -145512291 - LTR16C LTR ERVL -66 425 1 180 314 267 0 chrX 17087764 17087850 -145512080 + L2 LINE L2 3142 3250 -22 1004 262 20 12 chrX 17088115 17088367 -145511563 + MIR SINE MIR 6 259 -3 1826 145 34 3 chrX 17088377 17088674 -145511256 + AluJb SINE Alu 1 306 -6 210 128 0 0 chrX 17088680 17088719 -145511211 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 253 174 87 0 chrX 17088765 17088811 -145511119 - MER5A DNA MER1_type -139 50 1 181 303 202 9 chrX 17089050 17089159 -145510771 + MIR SINE MIR 17 146 -62 2281 91 17 3 chrX 17089238 17089536 -145510394 - AluSx SINE Alu -10 302 1 216 200 0 18 chrX 17089640 17089695 -145510235 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 1859 153 0 26 chrX 17089834 17090142 -145509788 - AluJb SINE Alu -2 310 11 5229 147 42 13 chrX 17090374 17090406 -145509524 + L1MB4 LINE L1 4822 4852 -1328 2644 62 113 0 chrX 17090406 17090742 -145509188 + MER51B LTR ERV1 1 374 -3 5229 147 42 13 chrX 17090742 17092031 -145507899 + L1MB4 LINE L1 4852 6180 0 703 146 127 0 chrX 17092593 17092703 -145507227 - FAM SINE Alu -16 169 46 234 50 0 0 chrX 17092743 17092783 -145507147 - Alu SINE Alu -1 302 263 2341 195 129 70 chrX 17092808 17093588 -145506342 + LTR1B LTR ERV1 1 826 0 301 213 80 0 chrX 17093695 17093770 -145506160 - L2 LINE L2 0 3313 3233 441 274 128 25 chrX 17094148 17094352 -145505578 + MIR SINE MIR 34 258 -4 288 0 0 0 chrX 17094356 17094388 -145505542 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 187 143 41 102 chrX 17094388 17094437 -145505493 - L2 LINE L2 -13 3300 3255 998 218 115 44 chrX 17094843 17095164 -145504766 + L1ME3A LINE L1 5827 6170 0 246 226 96 78 chrX 17095381 17095450 -145504480 - MIR3 SINE MIR -27 181 108 1705 81 41 0 chrX 17095450 17095671 -145504259 - MER30 DNA MER1_type 0 230 1 246 226 96 78 chrX 17095671 17095716 -145504214 - MIR3 SINE MIR -100 108 65 773 85 138 8 chrX 17096352 17096482 -145503448 + MSTB LTR MaLR 1 147 -279 765 126 71 0 chrX 17096482 17096609 -145503321 + MSTB LTR MaLR 293 428 0 308 244 12 49 chrX 17096831 17096913 -145503017 - MER91C DNA MER1_type -48 92 14 2042 125 17 7 chrX 17097636 17097924 -145502006 - AluJb SINE Alu -20 292 2 2429 84 0 3 chrX 17097948 17098259 -145501671 - AluSx SINE Alu -2 310 1 683 266 51 79 chrX 17098421 17098721 -145501209 + L1MEd LINE L1 1153 1472 -4924 2207 118 0 9 chrX 17098721 17099036 -145500894 + AluSx SINE Alu 1 312 0 683 266 51 79 chrX 17099036 17099235 -145500695 + L1MEd LINE L1 1472 1675 -4721 646 291 16 51 chrX 17099584 17099838 -145500092 - MER115 DNA AcHobo -447 246 2 2112 126 3 0 chrX 17099881 17100175 -145499755 + AluSx SINE Alu 2 296 -16 2617 251 96 35 chrX 17100507 17100608 -145499322 + L1MEd LINE L1 2135 2228 -3987 2165 98 3 54 chrX 17100608 17100925 -145499005 + AluSq SINE Alu 1 301 -12 2617 251 96 35 chrX 17100925 17101665 -145498265 + L1MEd LINE L1 2228 2921 -3294 1739 148 16 23 chrX 17101665 17101975 -145497955 + AluJb SINE Alu 5 312 0 2617 251 96 35 chrX 17101975 17102689 -145497241 + L1MEd LINE L1 2921 3746 -2469 2415 80 3 0 chrX 17103297 17103598 -145496332 - AluSq SINE Alu -11 302 1 658 274 42 9 chrX 17103792 17104004 -145495926 + MIR SINE MIR 2 220 -42 1117 135 0 0 chrX 17104095 17104251 -145495679 - AluJb SINE Alu -23 289 134 335 297 17 42 chrX 17104323 17104441 -145495489 - L2 LINE L2 0 3313 3199 218 207 35 35 chrX 17104940 17104998 -145494932 + MIR SINE MIR 53 110 -152 2055 142 7 0 chrX 17105182 17105529 -145494401 + AluJo SINE Alu 1 349 0 244 0 0 0 chrX 17106385 17106412 -145493518 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 2111 101 0 54 chrX 17106412 17106709 -145493221 - AluSx SINE Alu -31 281 1 4108 62 14 29 chrX 17107321 17107873 -145492057 + L1PA10 LINE L1 5622 6165 -3 600 313 78 15 chrX 17108275 17108682 -145491248 + L1ME4a LINE L1 5473 5907 -214 1870 164 0 7 chrX 17108725 17109018 -145490912 - AluJo SINE Alu -21 291 1 21 0 0 0 chrX 17109868 17109889 -145490041 + AT_rich Low_complexity Low_complexity 1 21 0 294 321 100 61 chrX 17110761 17110810 -145489120 - L2 LINE L2 -2 3270 3224 326 213 25 0 chrX 17110810 17110890 -145489040 + MER91A DNA MER1_type 1 82 -114 294 321 100 61 chrX 17110890 17111091 -145488839 - L2 LINE L2 -48 3224 2928 258 304 20 20 chrX 17111320 17111422 -145488508 + CT-rich Low_complexity Low_complexity 5 106 0 1627 158 91 0 chrX 17112001 17112286 -145487644 - AluJb SINE Alu -1 311 1 1330 59 0 0 chrX 17112801 17112970 -145486960 + L1PA13 LINE L1 5993 6161 -2 990 220 87 25 chrX 17113195 17113472 -145486458 + MLT1H LTR MaLR 256 549 0 291 263 0 25 chrX 17113472 17113552 -145486378 + CT-rich Low_complexity Low_complexity 4 81 0 606 358 23 18 chrX 17114466 17114900 -145485030 - L2 LINE L2 -208 3064 2626 405 0 0 0 chrX 17115009 17115054 -145484876 + (CA)n Simple_repeat Simple_repeat 1 45 0 1189 219 5 0 chrX 17115135 17115350 -145484580 - MER58A DNA MER1_type 0 224 9 226 333 67 7 chrX 17115359 17115509 -145484421 - L2 LINE L2 -678 2636 2478 279 288 220 0 chrX 17116661 17116838 -145483092 + L2 LINE L2 1768 1983 -1331 1583 90 82 23 chrX 17117330 17117419 -145482511 + L1PB4 LINE L1 5698 5780 -376 324 0 0 0 chrX 17117419 17117455 -145482475 + (CA)n Simple_repeat Simple_repeat 2 37 0 1583 90 82 23 chrX 17117455 17117621 -145482309 + L1PB4 LINE L1 5780 5968 -188 1025 138 31 41 chrX 17117683 17117878 -145482052 + L1PB4 LINE L1 5951 6143 -13 1898 140 0 29 chrX 17119246 17119553 -145480377 + AluJo SINE Alu 1 298 -14 2372 99 0 3 chrX 17119643 17119945 -145479985 + AluSx SINE Alu 1 301 -11 321 368 19 0 chrX 17120277 17120432 -145479498 + MIR SINE MIR 101 258 -4 2260 102 3 0 chrX 17120744 17121037 -145478893 + AluSx SINE Alu 1 294 -18 463 292 8 0 chrX 17121280 17121400 -145478530 - L2 LINE L2 -7 3265 3145 21 36 0 0 chrX 17122012 17122040 -145477890 + AT_rich Low_complexity Low_complexity 1 28 0 223 175 0 79 chrX 17122919 17122982 -145476948 - L2 LINE L2 -85 3228 3171 1088 214 42 5 chrX 17123979 17124194 -145475736 - MER58A DNA MER1_type 0 224 2 2042 146 0 0 chrX 17124288 17124582 -145475348 + AluJb SINE Alu 1 294 -18 265 293 67 27 chrX 17124668 17124818 -145475112 + L2 LINE L2 3124 3279 -34 2518 55 0 0 chrX 17126000 17126292 -145473638 + AluY SINE Alu 3 294 -17 1107 261 160 35 chrX 17126399 17127055 -145472875 + L1ME4a LINE L1 5384 6121 0 333 0 0 0 chrX 17127962 17127999 -145471931 + (CA)n Simple_repeat Simple_repeat 2 38 0 651 232 85 49 chrX 17130351 17130575 -145469355 - MIR SINE MIR 0 262 31 215 218 36 0 chrX 17130577 17130632 -145469298 + MIR SINE MIR 82 138 -124 287 301 10 10 chrX 17130915 17131018 -145468912 + MIR3 SINE MIR 81 183 -25 288 285 114 47 chrX 17131604 17131797 -145468133 + L1MA9 LINE L1 6077 6282 -30 427 265 96 0 chrX 17132145 17132311 -145467619 - L1ME4a LINE L1 -5 6116 5935 220 234 0 0 chrX 17132312 17132359 -145467571 + (TA)n Simple_repeat Simple_repeat 2 48 0 622 278 70 22 chrX 17132360 17132774 -145467156 - L1ME4a LINE L1 -158 5963 5480 1887 129 17 27 chrX 17133163 17133458 -145466472 - AluJb SINE Alu -20 292 1 2267 113 0 0 chrX 17134055 17134348 -145465582 + AluSx SINE Alu 1 293 -19 1600 217 179 50 chrX 17135331 17135885 -145464045 - MLT1E2 LTR MaLR -1 625 1 569 133 7 119 chrX 17136260 17136403 -145463527 + MLT1D LTR MaLR 88 214 -291 343 301 17 40 chrX 17136408 17136581 -145463349 - MIR SINE MIR -88 174 6 204 97 0 0 chrX 17136636 17136667 -145463263 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2334 71 0 0 chrX 17136671 17136952 -145462978 - AluSx SINE Alu -31 281 1 1396 186 84 11 chrX 17137223 17137508 -145462422 - AluJo SINE Alu -6 306 1 323 261 0 0 chrX 17137523 17137611 -145462319 + Charlie8 DNA MER1_type 73 160 -2257 986 224 95 81 chrX 17137939 17138372 -145461558 - LTR33A LTR ERVL -84 439 1 393 192 20 139 chrX 17138567 17138718 -145461212 + LTR16C LTR ERVL 310 442 -49 653 192 171 5 chrX 17139653 17139846 -145460084 - MIR SINE MIR -5 257 33 814 257 66 7 chrX 17140354 17140626 -145459304 + L2 LINE L2 2830 3117 -196 393 167 0 13 chrX 17140680 17140758 -145459172 + MER96 DNA MER1_type? 99 175 0 186 71 0 0 chrX 17140773 17140801 -145459129 + (T)n Simple_repeat Simple_repeat 1 28 0 357 191 0 15 chrX 17140808 17140876 -145459054 - MER106B DNA MER1_type -992 67 1 1405 80 144 0 chrX 17140883 17141084 -145458846 - MER30 DNA MER1_type 0 230 1 762 251 136 23 chrX 17141387 17141741 -145458189 - LTR16C LTR ERVL -2 489 96 332 201 117 145 chrX 17141895 17141949 -145457981 - MER5B DNA MER1_type -4 174 120 731 179 0 0 chrX 17141949 17142072 -145457858 + FLAM_A SINE Alu 1 123 -10 332 201 117 145 chrX 17142072 17142196 -145457734 - MER5B DNA MER1_type -58 120 1 1433 136 0 49 chrX 17142428 17142736 -145457194 - AluY SINE Alu -18 293 1 1538 246 170 21 chrX 17142818 17143335 -145456595 + MLT1G1 LTR MaLR 2 595 0 224 252 55 20 chrX 17143443 17143574 -145456356 - MIR SINE MIR -76 186 4 251 200 26 9 chrX 17143909 17144024 -145455906 + (TA)n Simple_repeat Simple_repeat 1 117 0 952 157 0 61 chrX 17144026 17144058 -145455872 - L1MB3 LINE L1 -19 6164 6132 2260 104 0 17 chrX 17144058 17144357 -145455573 - AluSx SINE Alu -18 294 1 952 157 0 61 chrX 17144357 17144521 -145455409 - L1MB3 LINE L1 -51 6132 5980 601 208 17 67 chrX 17144833 17145011 -145454919 + MIR SINE MIR 2 170 -92 2379 128 11 19 chrX 17145079 17145446 -145454484 - THE1B LTR MaLR 0 364 1 285 268 45 18 chrX 17145794 17145906 -145454024 - L1ME4a LINE L1 -1 6120 6006 1903 241 32 27 chrX 17146051 17146603 -145453327 + MLT2F LTR ERVL 1 604 -59 393 22 0 0 chrX 17146603 17146649 -145453281 + (TG)n Simple_repeat Simple_repeat 1 46 0 1903 241 32 27 chrX 17146649 17146710 -145453220 + MLT2F LTR ERVL 604 663 0 453 213 71 71 chrX 17146717 17146914 -145453016 + MER3 DNA MER1_type 13 209 0 * 1090 133 51 41 chrX 17146757 17146952 -145452978 - MER3 DNA MER1_type 0 209 13 1195 142 35 52 chrX 17147041 17147093 -145452837 - MLT1J2 LTR MaLR -222 228 177 2287 109 0 13 chrX 17147093 17147396 -145452534 - AluSx SINE Alu -13 299 1 1195 142 35 52 chrX 17147396 17147575 -145452355 - MLT1J2 LTR MaLR -273 177 1 297 209 220 11 chrX 17148254 17148345 -145451585 + MIR SINE MIR 41 150 -112 247 263 0 53 chrX 17148690 17148766 -145451164 - MIR3 SINE MIR -29 179 108 1863 153 10 16 chrX 17148917 17149225 -145450705 + AluJo SINE Alu 1 306 -6 319 305 0 25 chrX 17149398 17149516 -145450414 - MIR3 SINE MIR -7 201 87 * 361 178 168 19 chrX 17149512 17149619 -145450311 - L2 LINE L2 -1 3312 3190 1366 250 77 23 chrX 17151050 17151442 -145448488 + LTR16C LTR ERVL 79 491 0 2244 127 33 30 chrX 17151469 17151831 -145448099 - THE1B LTR MaLR -1 363 1 238 294 86 49 chrX 17153306 17153469 -145446461 - MIR SINE MIR -70 192 24 537 289 19 38 chrX 17153529 17153740 -145446190 + L1ME LINE L1 5521 5727 -394 1956 169 66 6 chrX 17155690 17156040 -145443890 + MLT1B LTR MaLR 17 387 -3 223 195 26 39 chrX 17156065 17156142 -145443788 + L2 LINE L2 146 221 -3093 615 201 34 126 chrX 17156147 17156410 -145443520 - MER112 DNA MER1_type -21 239 1 408 323 66 0 chrX 17156537 17156704 -145443226 + Tigger8 DNA MER2_type 318 495 -171 247 138 0 108 chrX 17156753 17156818 -145443112 - HsTC2 DNA Tc2 -15 1883 1826 693 187 216 0 chrX 17156829 17157000 -145442930 - MER3 DNA MER1_type -1 208 1 418 214 192 11 chrX 17157217 17157399 -145442531 - MIR SINE MIR 0 262 48 2101 143 0 3 chrX 17157766 17158074 -145441856 + AluJo SINE Alu 1 307 -5 25 51 0 0 chrX 17158412 17158451 -145441479 + AT_rich Low_complexity Low_complexity 1 39 0 2511 93 0 0 chrX 17158546 17158859 -145441071 + AluSq SINE Alu 1 313 0 1855 148 3 7 chrX 17158977 17159267 -145440663 + AluSx SINE Alu 1 289 -23 241 296 59 0 chrX 17159291 17159426 -145440504 + L1ME4a LINE L1 2202 2344 -3802 652 271 51 20 chrX 17159839 17160131 -145439799 + L1ME4a LINE L1 5535 5835 -286 941 160 0 0 chrX 17160140 17160290 -145439640 + AluSg/x SINE Alu 157 306 -6 330 232 112 48 chrX 17160409 17160534 -145439396 + L1ME4a LINE L1 5988 6120 -1 2406 57 0 23 chrX 17160742 17161043 -145438887 - AluY SINE Alu -17 294 1 2000 248 38 4 chrX 17161478 17161950 -145437980 - LTR16C LTR ERVL 0 491 4 443 312 125 30 chrX 17161973 17162444 -145437486 + L2 LINE L2 1968 2483 -831 533 190 68 68 chrX 17162722 17162885 -145437045 - MLT1J LTR MaLR -3 508 346 1633 121 0 28 chrX 17163031 17163280 -145436650 - AluSg/x SINE Alu -5 307 66 744 115 0 0 chrX 17164273 17164386 -145435544 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 924 258 24 16 chrX 17165160 17165412 -145434518 - MIR SINE MIR -4 258 5 241 212 341 12 chrX 17165530 17165615 -145434315 + L2 LINE L2 3138 3250 -22 559 192 0 0 chrX 17165633 17165737 -145434193 + MER96B DNA MER1_type? 1 104 -313 2335 100 0 0 chrX 17165737 17166028 -145433902 - AluSq SINE Alu -22 291 1 219 182 0 0 chrX 17166746 17166790 -145433140 - L2 LINE L2 0 3272 3229 2051 145 34 8 chrX 17166808 17167159 -145432771 + MLT1A1 LTR MaLR 6 365 0 201 213 21 0 chrX 17167907 17167954 -145431976 + (TA)n Simple_repeat Simple_repeat 2 49 0 221 351 47 27 chrX 17168579 17168727 -145431203 - L2 LINE L2 -291 2981 2831 2019 134 0 0 chrX 17168981 17169294 -145430636 - AluJb SINE Alu 0 313 1 267 228 18 0 chrX 17169664 17169721 -145430209 + L2 LINE L2 3254 3311 -2 1808 194 118 37 chrX 17169754 17170066 -145429864 - MLT1F1 LTR MaLR 0 567 191 369 0 0 0 chrX 17170066 17170107 -145429823 + (ATG)n Simple_repeat Simple_repeat 3 43 0 1808 194 118 37 chrX 17170107 17170315 -145429615 - MLT1F1 LTR MaLR -376 191 1 430 248 183 7 chrX 17171821 17171974 -145427956 - MER5A DNA MER1_type -1 188 9 494 248 163 15 chrX 17173039 17173241 -145426689 + MIR SINE MIR 31 262 0 2053 120 13 28 chrX 17173662 17173979 -145425951 + AluSx SINE Alu 1 312 0 251 135 58 0 chrX 17174322 17174374 -145425556 - L2 LINE L2 -1 3312 3258 2366 101 99 3 chrX 17174852 17175197 -145424733 - MER83B LTR ERV1 0 378 1 990 113 0 0 chrX 17176493 17176652 -145423278 - AluSg/x SINE Alu 0 317 159 1758 84 0 5 chrX 17176653 17176867 -145423063 - AluSx SINE Alu -99 213 1 22 35 0 0 chrX 17176996 17177025 -145422905 + AT_rich Low_complexity Low_complexity 1 29 0 405 297 8 16 chrX 17177172 17177321 -145422609 - MER5A DNA MER1_type -35 143 7 2403 77 0 0 chrX 17177736 17178021 -145421909 - AluSc SINE Alu -24 285 1 1949 147 0 26 chrX 17178615 17178921 -145421009 - AluJo SINE Alu -14 298 1 405 119 32 82 chrX 17179074 17179192 -145420738 + MLT1J2 LTR MaLR 286 450 0 1903 110 20 14 chrX 17179884 17180176 -145419754 - AluSg SINE Alu -16 294 1 33 56 0 0 chrX 17180464 17180518 -145419412 + GC_rich Low_complexity Low_complexity 1 54 0 363 241 15 30 chrX 17180559 17180692 -145419238 + G-rich Low_complexity Low_complexity 5 135 0 235 221 53 84 chrX 17181179 17181274 -145418656 - MIR3 SINE MIR -3 205 114 1694 236 47 9 chrX 17181932 17182376 -145417554 + L1ME3A LINE L1 5523 5983 -187 269 152 0 0 chrX 17182441 17182487 -145417443 + L1ME3A LINE L1 6122 6167 -3 849 161 0 54 chrX 17182598 17182747 -145417183 + AluJo SINE Alu 34 174 -138 585 221 46 0 chrX 17182751 17182882 -145417048 - L1MC/D LINE L1 -2322 5720 5584 1082 172 0 0 chrX 17182885 17183059 -145416871 + FRAM SINE Alu 1 174 -2 2240 114 3 10 chrX 17183757 17184064 -145415866 + AluJb SINE Alu 1 305 -7 492 195 24 41 chrX 17184175 17184298 -145415632 - MIR SINE MIR -125 137 17 231 328 82 45 chrX 17184312 17184446 -145415484 + MIR3 SINE MIR 3 141 -67 207 295 105 11 chrX 17184728 17184765 -145415165 - L2 LINE L2 0 3272 3240 1185 245 39 48 chrX 17184765 17184842 -145415088 - MLT1I LTR MaLR -1 408 332 1932 118 41 0 chrX 17184842 17185147 -145414783 - AluSx SINE Alu 0 316 1 1185 245 39 48 chrX 17185147 17185480 -145414450 - MLT1I LTR MaLR -77 332 1 207 295 105 11 chrX 17185480 17185537 -145414393 - L2 LINE L2 -32 3240 3169 1753 189 142 3 chrX 17186355 17186544 -145413386 - L1MD3 LINE L1 -735 7260 7099 180 77 0 0 chrX 17186544 17186570 -145413360 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1753 189 142 3 chrX 17186570 17186767 -145413163 - L1MD3 LINE L1 -896 7099 6820 2194 126 7 0 chrX 17186820 17187238 -145412692 - AluSx SINE Alu 0 420 1 260 278 31 0 chrX 17187467 17187564 -145412366 - MLT1L LTR MaLR -7 608 509 300 223 45 55 chrX 17187761 17187862 -145412068 - MLT1K LTR MaLR -342 246 147 235 135 0 0 chrX 17187867 17187904 -145412026 - MLT1L LTR MaLR -421 194 158 852 153 5 104 chrX 17187914 17188054 -145411876 - MER5A DNA MER1_type 0 189 73 2320 97 3 3 chrX 17188054 17188363 -145411567 - AluSx SINE Alu -3 309 1 852 153 5 104 chrX 17188363 17188424 -145411506 - MER5A DNA MER1_type -116 73 8 2052 149 51 9 chrX 17188519 17188869 -145411061 + MLT1A1 LTR MaLR 1 365 0 487 236 221 0 chrX 17188902 17189042 -145410888 - MER5A DNA MER1_type -9 180 10 278 247 62 0 chrX 17189343 17189424 -145410506 - MLT1I LTR MaLR 0 409 324 455 250 50 20 chrX 17189479 17189654 -145410276 - MLT1J1 LTR MaLR -173 236 66 2213 134 0 6 chrX 17189709 17190023 -145409907 - AluJb SINE Alu 0 312 1 468 231 43 129 chrX 17190126 17190321 -145409609 + L2 LINE L2 3037 3198 -115 2329 104 10 0 chrX 17190321 17190630 -145409300 - AluSx SINE Alu 0 312 1 468 231 43 129 chrX 17190630 17190737 -145409193 + L2 LINE L2 3198 3313 0 367 288 7 36 chrX 17191646 17191731 -145408199 + MIR3 SINE MIR 72 153 -55 1013 188 16 0 chrX 17191731 17191917 -145408013 - MER5A DNA MER1_type 0 189 1 367 288 7 36 chrX 17191917 17191970 -145407960 + MIR3 SINE MIR 153 206 -2 748 273 113 69 chrX 17191977 17192046 -145407884 - MLT1K LTR MaLR -6 582 517 1702 154 4 0 chrX 17192046 17192293 -145407637 + AluJo SINE Alu 1 248 -64 180 0 0 0 chrX 17192301 17192321 -145407609 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 748 273 113 69 chrX 17192321 17192674 -145407256 - MLT1K LTR MaLR -77 511 132 338 224 145 0 chrX 17192724 17192800 -145407130 + L2 LINE L2 3225 3311 -2 201 39 0 0 chrX 17193272 17193298 -145406632 + (T)n Simple_repeat Simple_repeat 1 26 0 222 269 0 0 chrX 17193315 17193367 -145406563 + MIR3 SINE MIR 109 160 -48 727 211 72 6 chrX 17193367 17193533 -145406397 - MER5B DNA MER1_type 0 178 2 356 218 73 27 chrX 17193582 17193692 -145406238 + MIR SINE MIR 86 200 -62 200 249 0 33 chrX 17193702 17193774 -145406156 + MER5A DNA MER1_type 4 74 -115 1706 159 0 72 chrX 17193775 17194096 -145405834 + AluJb SINE Alu 1 298 -14 518 145 3 3 chrX 17194109 17194214 -145405716 + L1MB7 LINE L1 5723 5827 -357 452 273 149 7 chrX 17194539 17194693 -145405237 + MER5A DNA MER1_type 14 189 0 1616 54 0 10 chrX 17194822 17195026 -145404904 - L1PA5 LINE L1 -4 6150 5949 2461 81 0 0 chrX 17195568 17195864 -145404066 + AluSp SINE Alu 1 296 -17 381 211 0 44 chrX 17196164 17196254 -145403676 + MER20 DNA MER1_type 1 86 -133 2088 120 7 7 chrX 17196298 17196597 -145403333 - AluSx SINE Alu -13 299 1 31 68 0 0 chrX 17196686 17196745 -145403185 + AT_rich Low_complexity Low_complexity 1 59 0 185 93 53 40 chrX 17196745 17196820 -145403110 + (TA)n Simple_repeat Simple_repeat 1 76 0 348 286 80 0 chrX 17196931 17197043 -145402887 - L2 LINE L2 0 3272 3152 343 211 9 18 chrX 17197074 17197183 -145402747 - L1MC4 LINE L1 -1339 6983 2006 2223 105 3 3 chrX 17197189 17197485 -145402445 - AluSx SINE Alu -16 296 1 1074 238 33 26 chrX 17197709 17197982 -145401948 - MLT1J1 LTR MaLR -165 281 7 7348 198 96 22 chrX 17198197 17198811 -145401119 + L1MB7 LINE L1 3124 3691 -2455 2259 123 7 0 chrX 17198811 17199119 -145400811 + AluSx SINE Alu 1 310 -2 7348 198 96 22 chrX 17199119 17199358 -145400572 + L1MB7 LINE L1 3691 3911 -2235 1529 106 0 38 chrX 17199358 17199595 -145400335 - AluSg/x SINE Alu -4 308 81 7348 198 96 22 chrX 17199595 17200606 -145399324 + L1MB7 LINE L1 3911 5127 -1019 * 43883 31 22 1 chrX 17200600 17206628 -145393302 + L1PA2 LINE L1 1 6155 0 3265 150 25 12 chrX 17206633 17207304 -145392626 + L1MB7 LINE L1 5106 5785 -399 1832 165 7 20 chrX 17207304 17207607 -145392323 + AluJb SINE Alu 1 299 -13 3265 150 25 12 chrX 17207607 17207651 -145392279 + L1MB7 LINE L1 5785 5827 -357 2375 97 0 0 chrX 17208113 17208421 -145391509 - AluSc SINE Alu -1 308 1 333 271 93 70 chrX 17208687 17208800 -145391130 - L2 LINE L2 0 3272 3154 1321 163 0 41 chrX 17208800 17209046 -145390884 - MER106A DNA MER1_type 0 236 1 333 271 93 70 chrX 17209046 17209061 -145390869 - L2 LINE L2 -118 3154 3141 203 204 41 0 chrX 17209244 17209293 -145390637 + CT-rich Low_complexity Low_complexity 1 51 0 1201 230 59 64 chrX 17209574 17209979 -145389951 + MLT1J LTR MaLR 101 503 -8 1998 146 7 3 chrX 17210321 17210616 -145389314 + AluJo SINE Alu 1 296 -16 2046 152 0 0 chrX 17211164 17211473 -145388457 - AluSx SINE Alu -3 309 1 2400 132 42 20 chrX 17211977 17212333 -145387597 + THE1B LTR MaLR 1 364 0 1224 265 49 32 chrX 17212473 17212881 -145387049 - LTR33 LTR ERVL -6 515 101 2293 103 7 0 chrX 17212937 17213237 -145386693 + AluSq SINE Alu 1 302 -11 2064 122 0 11 chrX 17213302 17213622 -145386308 + AluSp SINE Alu 1 317 0 347 339 0 0 chrX 17213623 17213732 -145386198 + MIR SINE MIR 154 262 0 1233 106 0 0 chrX 17214769 17214930 -145385000 - AluSg/x SINE Alu -10 300 140 968 118 0 15 chrX 17214933 17215069 -145384861 + AluSg SINE Alu 1 134 -176 1861 142 33 20 chrX 17215069 17215372 -145384558 + AluSx SINE Alu 1 307 -5 190 373 60 15 chrX 17265611 17265745 -145334185 - L2 LINE L2 0 3272 3133 655 215 126 37 chrX 17266359 17266573 -145333357 + Charlie1b DNA MER1_type 10 242 -281 369 250 12 12 chrX 17266725 17266809 -145333121 + Tigger2 DNA MER2_type 2632 2715 -3 858 161 57 43 chrX 17266865 17267076 -145332854 - L1MB4 LINE L1 -210 5970 5757 1403 197 91 18 chrX 17267086 17267426 -145332504 + MLT1A1 LTR MaLR 1 365 0 261 299 72 0 chrX 17268093 17268190 -145331740 - MIR SINE MIR -21 241 138 216 182 0 0 chrX 17269522 17269566 -145330364 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2289 138 24 29 chrX 17269722 17270095 -145329835 - L1MB5 LINE L1 -216 5958 5586 1279 205 107 60 chrX 17270095 17270442 -145329488 + MLT1A1 LTR MaLR 3 365 0 2289 138 24 29 chrX 17270442 17270487 -145329443 - L1MB5 LINE L1 -588 5586 5542 530 292 152 14 chrX 17270969 17271246 -145328684 - L2 LINE L2 -1006 2308 1994 1573 165 96 38 chrX 17272353 17272698 -145327232 - MLT1A1 LTR MaLR 0 365 1 376 177 62 21 chrX 17273178 17273274 -145326656 + L1ME1 LINE L1 5792 5891 -275 1519 174 14 11 chrX 17273278 17273554 -145326376 + AluJb SINE Alu 7 283 -29 2316 90 17 3 chrX 17274018 17274319 -145325611 - AluSc SINE Alu -2 307 3 1038 109 0 34 chrX 17274320 17274467 -145325463 - AluSq/x SINE Alu -170 142 1 184 264 75 0 chrX 17274487 17274540 -145325390 + MIR SINE MIR 87 143 -65 835 111 24 0 chrX 17277056 17277182 -145322748 - AluSg/x SINE Alu -15 294 166 1604 114 5 0 chrX 17277283 17277503 -145322427 - AluSx SINE Alu -90 222 2 3913 92 76 26 chrX 17277639 17278001 -145321929 - MER39B LTR ERV1 -4 649 307 2198 98 0 23 chrX 17278001 17278307 -145321623 - AluSx SINE Alu -13 299 1 2195 98 27 0 chrX 17278314 17278610 -145321320 - AluSp SINE Alu -9 304 1 3913 92 76 26 chrX 17278610 17278857 -145321073 - MER39B LTR ERV1 -351 302 1 358 239 123 29 chrX 17278979 17279195 -145320735 + MIR SINE MIR 24 254 -8 1793 98 12 8 chrX 17279274 17279528 -145320402 + AluSx SINE Alu 1 255 -57 2213 96 16 19 chrX 17279981 17280294 -145319636 + AluSx SINE Alu 1 312 0 189 238 24 0 chrX 17281815 17281857 -145318073 + MIR SINE MIR 107 149 -113 1232 122 0 0 chrX 17282033 17282197 -145317733 + AluSg/x SINE Alu 133 296 -16 265 191 62 25 chrX 17282249 17282411 -145317519 + (TA)n Simple_repeat Simple_repeat 1 168 0 2170 252 65 13 chrX 17282531 17283146 -145316784 - L1MC4a LINE L1 -1883 5925 5279 1244 166 12 95 chrX 17283692 17283891 -145316039 - AluJb SINE Alu 0 312 151 1844 94 97 4 chrX 17283891 17284158 -145315772 - AluSg SINE Alu -16 294 3 1244 166 12 95 chrX 17284158 17284296 -145315634 - AluJb SINE Alu -161 151 3 241 210 32 0 chrX 17284301 17284363 -145315567 - AluJ/monomer SINE Alu 0 300 237 471 181 9 67 chrX 17284570 17284675 -145315255 - Tigger7 DNA MER2_type -1 2586 2488 * 1452 183 28 0 chrX 17284672 17284924 -145315006 - Tigger7 DNA MER2_type -2220 267 9 521 157 36 121 chrX 17285050 17285093 -145314837 - MER5A DNA MER1_type -3 186 141 1898 159 7 0 chrX 17285093 17285388 -145314542 - AluJb SINE Alu -15 297 1 521 157 36 121 chrX 17285388 17285484 -145314446 - MER5A DNA MER1_type -48 141 59 18543 38 2 4 chrX 17285726 17287975 -145311955 + L1P LINE L1 2679 4924 -1222 418 271 115 66 chrX 17288128 17288588 -145311342 + L2 LINE L2 2750 3295 -18 2556 60 0 0 chrX 17288754 17289052 -145310878 - AluSc SINE Alu -11 298 1 3077 157 68 28 chrX 17289064 17289186 -145310744 - L1MB8 LINE L1 0 6178 6062 2540 113 16 34 chrX 17289186 17289568 -145310362 + THE1C LTR MaLR 1 375 0 3077 157 68 28 chrX 17289568 17290050 -145309880 - L1MB8 LINE L1 -116 6062 5550 201 74 0 0 chrX 17290206 17290233 -145309697 + (A)n Simple_repeat Simple_repeat 1 27 0 622 205 6 66 chrX 17290349 17290515 -145309415 + MER3 DNA MER1_type 13 168 -41 392 173 233 33 chrX 17290819 17290969 -145308961 + LTR50 LTR ERVL 36 215 -580 433 213 287 22 chrX 17291054 17291284 -145308646 + LTR50 LTR ERVL 505 795 0 4297 151 11 27 chrX 17291461 17292244 -145307686 + L1MA3 LINE L1 5161 5932 -373 189 0 0 0 chrX 17292244 17292265 -145307665 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4297 151 11 27 chrX 17292265 17292338 -145307592 + L1MA3 LINE L1 5932 6005 -300 4790 191 48 33 chrX 17292447 17292564 -145307366 - L1MB8 LINE L1 -646 5532 5418 2191 107 11 0 chrX 17292564 17292886 -145307044 - AluSx SINE Alu 0 325 1 4790 191 48 33 chrX 17292886 17294007 -145305923 - L1MB8 LINE L1 -760 5418 4285 2255 131 0 0 chrX 17294049 17294361 -145305569 - AluSx SINE Alu 0 312 1 449 285 28 34 chrX 17294464 17294643 -145305287 - HAL1b LINE L1 -812 536 359 1992 204 48 12 chrX 17295022 17295443 -145304487 + MER63B DNA MER1_type 1 436 0 23 0 0 0 chrX 17295494 17295517 -145304413 + AT_rich Low_complexity Low_complexity 1 23 0 1354 238 92 44 chrX 17296616 17297070 -145302860 - MLT1K LTR MaLR 0 476 1 626 256 94 8 chrX 17298031 17298285 -145301645 - L1ME LINE L1 -601 5563 5288 261 0 0 0 chrX 17298333 17298362 -145301568 + (CA)n Simple_repeat Simple_repeat 2 30 0 311 280 98 81 chrX 17298575 17299046 -145300884 - L1MB8 LINE L1 -1944 4202 3724 22 35 0 0 chrX 17299119 17299148 -145300782 + AT_rich Low_complexity Low_complexity 1 29 0 13959 72 4 1 chrX 17299217 17301007 -145298923 + L1P LINE L1 7 1801 -4345 2061 142 0 3 chrX 17301155 17301464 -145298466 - AluJo SINE Alu -2 310 3 1151 290 129 19 chrX 17302105 17302384 -145297546 - L2 LINE L2 -1 3312 3065 1834 134 42 0 chrX 17302384 17302674 -145297256 + AluJb SINE Alu 11 311 0 1151 290 129 19 chrX 17302674 17303035 -145296895 - L2 LINE L2 -248 3065 2594 251 208 167 0 chrX 17303367 17303439 -145296491 - MIR SINE MIR -102 160 77 439 217 43 0 chrX 17303986 17304078 -145295852 + MIR SINE MIR 97 192 -70 2911 82 5 14 chrX 17304173 17304540 -145295390 - THE1B LTR MaLR 0 364 1 1945 88 92 0 chrX 17305031 17305303 -145294627 + L1PA13 LINE L1 5867 6163 0 2461 68 0 40 chrX 17305547 17305871 -145294059 - AluY SINE Alu 0 311 1 2207 112 0 3 chrX 17305873 17306176 -145293754 - AluSx SINE Alu -10 302 1 1595 171 4 11 chrX 17306480 17306761 -145293169 + AluJo SINE Alu 24 302 -10 862 116 0 0 chrX 17307264 17307376 -145292554 + FLAM_C SINE Alu 14 125 -18 258 306 82 41 chrX 17307436 17307583 -145292347 + L1MC4 LINE L1 6460 6612 -1430 273 57 0 0 chrX 17307598 17307633 -145292297 + (CA)n Simple_repeat Simple_repeat 2 36 0 1791 175 3 0 chrX 17307637 17307928 -145292002 + AluJb SINE Alu 1 292 -20 21 0 0 0 chrX 17308380 17308401 -145291529 + AT_rich Low_complexity Low_complexity 1 21 0 934 247 94 65 chrX 17308421 17308911 -145291019 + L1ME4a LINE L1 5513 6016 -105 1249 126 143 116 chrX 17309773 17309869 -145290061 + AluJb SINE Alu 2 94 -208 2080 117 0 0 chrX 17309869 17310159 -145289771 + AluSx SINE Alu 1 290 -22 1249 126 143 116 chrX 17310159 17310355 -145289575 + AluJb SINE Alu 94 302 0 397 213 276 0 chrX 17310838 17310965 -145288965 - MER5A DNA MER1_type 0 189 28 1643 262 78 22 chrX 17310988 17311010 -145288920 - MLT1L LTR MaLR -50 565 546 2541 94 30 22 chrX 17311010 17311371 -145288559 - THE1B LTR MaLR 0 364 1 1643 262 78 22 chrX 17311371 17311883 -145288047 - MLT1L LTR MaLR -69 546 1 1873 163 12 12 chrX 17312846 17313177 -145286753 + MER67C LTR ERV1 375 705 -5 777 136 0 0 chrX 17313427 17313545 -145286385 + FLAM_A SINE Alu 20 137 -5 2046 110 17 0 chrX 17313622 17313914 -145286016 - AluSx SINE Alu -15 297 1 874 291 83 6 chrX 17314249 17314586 -145285344 - LTR16B LTR ERVL 0 464 102 1754 157 23 3 chrX 17315057 17315243 -145284687 - AluJb SINE Alu 0 312 116 216 0 0 0 chrX 17315243 17315267 -145284663 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1754 157 23 3 chrX 17315267 17315386 -145284544 - AluJb SINE Alu -196 116 1 2121 112 0 3 chrX 17315396 17315699 -145284231 - AluSx SINE Alu -10 302 1 444 266 129 17 chrX 17315848 17316081 -145283849 + L1ME4a LINE L1 5591 5849 -272 2314 78 0 10 chrX 17316124 17316432 -145283498 + AluSx SINE Alu 6 310 -2 1039 195 19 28 chrX 17316630 17316845 -145283085 - MER20 DNA MER1_type -4 215 3 186 245 118 88 chrX 17317356 17317458 -145282472 - L2 LINE L2 -46 3267 3163 632 279 105 43 chrX 17317599 17317972 -145281958 - L2 LINE L2 -371 2943 2548 702 229 39 0 chrX 17319092 17319245 -145280685 + MER5B DNA MER1_type 20 178 0 1989 132 6 10 chrX 17319369 17319680 -145280250 - AluSx SINE Alu -2 310 1 943 224 9 31 chrX 17319700 17319923 -145280007 + MER58A DNA MER1_type 3 220 -4 343 264 52 69 chrX 17319980 17320154 -145279776 + L1ME4a LINE L1 5909 6079 -42 387 169 0 0 chrX 17320165 17320236 -145279694 + (TG)n Simple_repeat Simple_repeat 2 72 0 957 150 0 42 chrX 17320237 17320404 -145279526 - AluJb SINE Alu -19 293 134 1608 195 0 7 chrX 17320404 17320706 -145279224 - AluJo SINE Alu -12 300 1 456 198 10 20 chrX 17321157 17321258 -145278672 - LTR33 LTR ERVL -420 101 2 309 131 0 0 chrX 17321313 17321374 -145278556 + (TA)n Simple_repeat Simple_repeat 2 62 0 832 120 8 0 chrX 17321375 17321492 -145278438 - FLAM_C SINE Alu -15 118 1 347 297 21 73 chrX 17321675 17321867 -145278063 - L2 LINE L2 -267 3046 2865 221 277 53 21 chrX 17321947 17322041 -145277889 + MIR3 SINE MIR 91 187 -21 711 286 45 32 chrX 17322145 17322453 -145277477 + LTR16C LTR ERVL 2 313 -178 21 0 0 0 chrX 17322612 17322633 -145277297 + AT_rich Low_complexity Low_complexity 1 21 0 2279 77 0 3 chrX 17322636 17322935 -145276995 - AluSx SINE Alu -14 298 1 28 48 0 0 chrX 17323289 17323331 -145276599 + AT_rich Low_complexity Low_complexity 1 42 0 2143 106 6 3 chrX 17324088 17324399 -145275531 + AluSx SINE Alu 1 312 0 259 191 26 26 chrX 17325295 17325410 -145274520 + GA-rich Low_complexity Low_complexity 4 118 0 399 227 50 28 chrX 17325411 17325610 -145274320 + G-rich Low_complexity Low_complexity 1 203 0 565 287 13 7 chrX 17326208 17326358 -145273572 - L2 LINE L2 -1 3312 3162 483 283 50 96 chrX 17326363 17326706 -145273224 + MLT1J2 LTR MaLR 17 343 -107 1142 233 20 44 chrX 17326783 17327246 -145272684 - L2 LINE L2 -146 3167 2720 1578 139 20 41 chrX 17327250 17327544 -145272386 - AluJb SINE Alu -24 288 1 5025 213 34 36 chrX 17327614 17329012 -145270918 + L1ME3 LINE L1 3945 5339 -807 2890 201 42 23 chrX 17329008 17329704 -145270226 + L1MC4 LINE L1 7334 8042 0 * 2386 159 82 0 chrX 17329717 17330156 -145269774 + L1ME3 LINE L1 5320 5794 -384 10850 150 47 8 chrX 17330326 17330467 -145269463 - L1MA9 LINE L1 0 6312 6178 231 36 0 0 chrX 17330467 17330495 -145269435 + (TG)n Simple_repeat Simple_repeat 1 28 0 10850 150 47 8 chrX 17330495 17333307 -145266623 - L1MA9 LINE L1 -134 6178 3238 346 139 89 0 chrX 17333494 17333573 -145266357 - L1MA9 LINE L1 -2865 3281 3196 1315 101 0 0 chrX 17333575 17333754 -145266176 - AluSg/x SINE Alu -1 311 133 512 194 29 7 chrX 17333754 17333893 -145266037 - L1MA9 LINE L1 -2941 3205 3064 * 813 246 27 48 chrX 17333889 17334219 -145265711 + L1MC4 LINE L1 7717 8039 -3 434 227 0 67 chrX 17334354 17334473 -145265457 - MIR SINE MIR -149 113 3 202 226 65 16 chrX 17335469 17335531 -145264399 - MIR SINE MIR -73 189 125 374 224 47 9 chrX 17335590 17335697 -145264233 + L1ME3 LINE L1 5834 5944 -218 1817 147 88 0 chrX 17336459 17336779 -145263151 - MER7A DNA MER2_type 0 346 1 1453 181 142 14 chrX 17336861 17337201 -145262729 - MLT2D LTR ERVL -78 336 1 2594 143 59 5 chrX 17337201 17337640 -145262290 - ERVL-D LTR ERVL -7 5757 5295 898 289 56 34 chrX 17337640 17337996 -145261934 - MLT1L LTR MaLR -251 364 1 293 226 144 41 chrX 17337997 17338143 -145261787 + L1MC/D LINE L1 4068 4228 -1918 539 294 62 0 chrX 17338329 17338523 -145261407 - MIR SINE MIR -45 217 12 1776 159 0 3 chrX 17338585 17338875 -145261055 - AluJo SINE Alu -22 290 2 324 286 41 41 chrX 17338884 17339104 -145260826 + L1MC/D LINE L1 4617 4836 -1310 291 235 74 12 chrX 17339116 17339197 -145260733 - L1M4 LINE L1 -480 5690 5605 660 235 133 20 chrX 17339212 17339408 -145260522 + MIR SINE MIR 40 257 -5 21 0 0 0 chrX 17339408 17339429 -145260501 + AT_rich Low_complexity Low_complexity 1 21 0 1054 165 48 96 chrX 17339429 17339526 -145260404 - MER8 DNA MER2_type 0 239 139 2290 105 0 0 chrX 17339526 17339831 -145260099 + AluSx SINE Alu 1 305 -7 1054 165 48 96 chrX 17339831 17339982 -145259948 - MER8 DNA MER2_type -100 139 3 540 248 60 78 chrX 17340005 17340335 -145259595 + L1MC/D LINE L1 4877 5211 -910 1723 171 3 16 chrX 17340335 17340651 -145259279 + AluJo SINE Alu 1 312 0 540 248 60 78 chrX 17340651 17341012 -145258918 + L1MC/D LINE L1 5211 5554 -567 2203 184 62 71 chrX 17341134 17341402 -145258528 - L1MEc LINE L1 -3145 3070 2801 2865 164 34 27 chrX 17341402 17341419 -145258511 + MER74A LTR ERVL 1 16 -542 1708 136 3 34 chrX 17341419 17341752 -145258178 - AluJb SINE Alu 0 324 1 2865 164 34 27 chrX 17341752 17342287 -145257643 + MER74A LTR ERVL 16 558 0 2203 184 62 71 chrX 17342287 17342693 -145257237 - L1MEc LINE L1 -3414 2801 2402 682 272 43 39 chrX 17342694 17342731 -145257199 - L1MEc LINE L1 -5882 514 479 2375 78 3 0 chrX 17342731 17343039 -145256891 - AluSx SINE Alu -3 309 1 682 272 43 39 chrX 17343039 17343233 -145256697 - L1MEc LINE L1 -5917 479 282 807 218 26 0 chrX 17343240 17343396 -145256534 - MER45A DNA AcHobo -1 177 18 1092 161 31 63 chrX 17343396 17343651 -145256279 - THE1C LTR MaLR 0 375 129 342 261 132 94 chrX 17344106 17344501 -145255429 - MLT1J LTR MaLR -3 508 99 2179 95 3 19 chrX 17345454 17345771 -145254159 + AluSx SINE Alu 1 312 0 1915 113 77 47 chrX 17346007 17346371 -145253559 + THE1C LTR MaLR 1 375 0 637 284 6 18 chrX 17346909 17347078 -145252852 + MIR3 SINE MIR 37 203 -5 1552 129 0 0 chrX 17347583 17347808 -145252122 + AluSx SINE Alu 1 225 -87 25 0 0 0 chrX 17348023 17348048 -145251882 + AT_rich Low_complexity Low_complexity 1 25 0 228 238 0 63 chrX 17348209 17348272 -145251658 + MLT1L LTR MaLR 142 200 -415 325 266 35 9 chrX 17348366 17348479 -145251451 + MLT1L LTR MaLR 496 611 -4 317 295 86 43 chrX 17348480 17348690 -145251240 + L2 LINE L2 2065 2283 -1031 472 354 0 19 chrX 17348709 17348870 -145251060 - MER5B DNA MER1_type -17 161 4 760 129 60 164 chrX 17349167 17349399 -145250531 + MER3 DNA MER1_type 2 209 0 536 238 52 87 chrX 17349517 17349769 -145250161 + MER112 DNA MER1_type 18 260 0 372 306 111 77 chrX 17350904 17351532 -145248398 - L2 LINE L2 -54 3218 2577 906 239 159 49 chrX 17352133 17352580 -145247350 + MLT1H LTR MaLR 50 545 -4 1048 227 51 16 chrX 17353506 17353762 -145246168 - MLT1C LTR MaLR 0 467 203 1727 151 7 0 chrX 17353820 17354105 -145245825 - AluJo SINE Alu -25 287 1 755 73 0 0 chrX 17354134 17354230 -145245700 + HY3 scRNA scRNA 1 96 -5 221 171 0 0 chrX 17354232 17354273 -145245657 + A-rich Low_complexity Low_complexity 1 41 0 838 201 6 0 chrX 17354277 17354436 -145245494 - MLT1C LTR MaLR -230 160 1 1815 108 50 0 chrX 17354632 17354911 -145245019 + AluSx SINE Alu 1 293 -19 2172 103 80 9 chrX 17355686 17356036 -145243894 - THE1C LTR MaLR 0 375 1 1229 177 63 41 chrX 17356374 17356645 -145243285 + MER67C LTR ERV1 1 277 -433 24189 29 3 0 chrX 17356787 17361179 -145238751 + L1PA4 LINE L1 1740 6142 -13 1940 126 3 3 chrX 17361410 17361715 -145238215 + AluJo SINE Alu 1 305 0 1158 143 27 49 chrX 17363349 17363572 -145236358 - MER20 DNA MER1_type -1 218 1 1013 235 14 0 chrX 17364379 17364596 -145235334 - LTR33 LTR ERVL -301 220 1 2043 116 6 3 chrX 17365519 17365830 -145234100 - AluSx SINE Alu 0 312 1 220 179 0 0 chrX 17365873 17365912 -145234018 + L2 LINE L2 3234 3272 0 409 247 49 121 chrX 17365988 17366259 -145233671 - MIR SINE MIR -6 256 19 1023 115 0 36 chrX 17366563 17366728 -145233202 - FRAM SINE Alu 0 40 1 200 273 109 27 chrX 17366995 17367105 -145232825 + L2 LINE L2 1913 2031 -1283 209 307 95 51 chrX 17367106 17367243 -145232687 + MIR SINE MIR 120 262 0 208 387 39 70 chrX 17367722 17368006 -145231924 + L2 LINE L2 2973 3247 -25 271 208 0 19 chrX 17368022 17368075 -145231855 + MIR3 SINE MIR 134 185 -23 360 303 110 45 chrX 17368197 17368352 -145231578 + MIR3 SINE MIR 14 178 -30 191 129 0 0 chrX 17368518 17368549 -145231381 - L3 LINE CR1 -494 1083 1053 2012 119 0 13 chrX 17368659 17368961 -145230969 - AluSx SINE Alu -14 298 1 21 0 0 0 chrX 17369191 17369212 -145230718 + AT_rich Low_complexity Low_complexity 1 21 0 928 176 6 0 chrX 17369217 17369376 -145230554 + AluJb SINE Alu 128 287 -25 2096 76 56 7 chrX 17369553 17369841 -145230089 + AluSx SINE Alu 1 302 -10 826 227 191 20 chrX 17370710 17370961 -145228969 + AluJo SINE Alu 2 295 -17 272 115 103 0 chrX 17370974 17371061 -145228869 + (TA)n Simple_repeat Simple_repeat 1 96 0 1297 112 0 0 chrX 17371067 17371246 -145228684 + AluJb SINE Alu 133 311 -1 1741 257 45 11 chrX 17372236 17372769 -145227161 - L1MB8 LINE L1 0 6178 5628 988 216 27 9 chrX 17372791 17373013 -145226917 + MIR SINE MIR 32 257 -5 186 195 0 24 chrX 17373033 17373074 -145226856 - MIR3 SINE MIR -6 202 163 691 83 31 0 chrX 17373288 17373384 -145226546 + AluSg/x SINE Alu 192 290 -19 289 112 0 44 chrX 17373798 17373852 -145226078 - MER57A LTR ERV1 -67 336 295 1852 126 0 0 chrX 17373874 17374137 -145225793 + AluJo SINE Alu 18 280 -32 2143 111 3 0 chrX 17375063 17375369 -145224561 - AluSx SINE Alu -5 307 1 302 288 0 0 chrX 17375820 17375886 -145224044 + MIR SINE MIR 90 155 -107 1755 194 106 37 chrX 17375989 17376422 -145223508 + MLT1F LTR MaLR 1 463 -79 904 117 0 15 chrX 17377911 17378048 -145221882 + AluJb SINE Alu 155 289 -23 1452 130 138 8 chrX 17381003 17381264 -145218666 + AluJb SINE Alu 1 295 -17 394 231 167 0 chrX 17381573 17381681 -145218249 + MIR SINE MIR 61 186 -76 228 296 68 0 chrX 17383367 17383455 -145216475 + MER5C DNA MER1_type 31 124 -200 1788 111 57 4 chrX 17384192 17384472 -145215458 + AluSc SINE Alu 1 295 -14 1300 188 58 52 chrX 17384807 17385152 -145214778 - MER7A DNA MER2_type -1 345 1 642 187 24 6 chrX 17385416 17385612 -145214318 - MER8 DNA MER2_type -6 233 3 2059 107 3 32 chrX 17385633 17385943 -145213987 + AluSq SINE Alu 1 301 -12 566 136 164 0 chrX 17385956 17386066 -145213864 + AluJo/FLAM SINE Alu 1 128 -174 2165 102 0 7 chrX 17386068 17386373 -145213557 + AluSx SINE Alu 1 303 -9 2240 95 0 3 chrX 17388417 17388721 -145211209 - AluSq SINE Alu -10 303 1 316 146 15 37 chrX 17390188 17390393 -145209537 + AluJo SINE Alu 1 257 -45 25 0 0 0 chrX 17390393 17390418 -145209512 + AT_rich Low_complexity Low_complexity 1 25 0 1390 134 26 37 chrX 17390783 17391052 -145208878 + AluJo SINE Alu 25 290 -22 443 203 44 95 chrX 17391338 17391496 -145208434 - MIR SINE MIR -3 259 110 360 330 2 0 chrX 17391545 17391672 -145208258 - MIR SINE MIR -78 130 2 258 179 30 30 chrX 17391971 17392038 -145207892 + (CCCCG)n Simple_repeat Simple_repeat 2 68 0 533 343 31 42 chrX 17392780 17393069 -145206861 + L3 LINE CR1 918 1203 -374 660 254 105 10 chrX 17393192 17393401 -145206529 - MLT1I LTR MaLR -165 244 16 216 0 0 0 chrX 17393471 17393495 -145206435 + (TG)n Simple_repeat Simple_repeat 1 24 0 356 290 123 43 chrX 17393504 17393666 -145206264 + L3 LINE CR1 1355 1529 -48 265 310 103 0 chrX 17393859 17393975 -145205955 - L2 LINE L2 -961 2353 2226 321 254 26 0 chrX 17394761 17394875 -145205055 - L1ME3 LINE L1 -6 6156 6040 1888 164 0 0 chrX 17394876 17395186 -145204744 + AluJb SINE Alu 1 310 -2 1064 149 120 130 chrX 17395203 17395519 -145204411 - MLT1A1 LTR MaLR -52 313 1 841 139 0 36 chrX 17395811 17395948 -145203982 - FLAM_C SINE Alu -10 133 2 950 249 4 31 chrX 17396128 17396353 -145203577 + MIR SINE MIR 23 241 -21 382 130 0 0 chrX 17396456 17396510 -145203420 + Alu SINE Alu 1 54 -247 * 410 171 9 48 chrX 17396498 17396603 -145203327 + LTR3 LTR ERVK 330 430 -2 765 100 0 18 chrX 17396609 17396719 -145203211 + AluSg/x SINE Alu 180 287 -23 2682 13 0 3 chrX 17397682 17397990 -145201940 - AluYa5 SINE Alu -4 307 1 366 307 10 10 chrX 17398256 17398357 -145201573 + MIR SINE MIR 17 117 -91 1412 153 95 11 chrX 17398398 17398660 -145201270 + AluJo SINE Alu 1 284 -28 49 32 0 0 chrX 17398676 17398739 -145201191 + AT_rich Low_complexity Low_complexity 1 63 0 198 308 44 107 chrX 17399081 17399240 -145200690 + MIR3 SINE MIR 59 207 -1 1955 118 0 14 chrX 17399605 17399931 -145199999 - AluSq SINE Alu 0 322 1 2162 113 3 0 chrX 17399982 17400283 -145199647 - AluSx SINE Alu -10 302 1 997 261 18 70 chrX 17400323 17400652 -145199278 - LTR16C LTR ERVL -1 490 179 484 346 82 37 chrX 17401804 17402258 -145197672 + L2 LINE L2 2833 3306 -7 2317 103 0 0 chrX 17402259 17402569 -145197361 + AluSx SINE Alu 1 310 -2 2064 105 0 3 chrX 17402569 17402902 -145197028 + AluSx SINE Alu 1 333 0 1173 128 0 0 chrX 17402903 17403067 -145196863 + AluSg/x SINE Alu 134 297 -13 662 247 154 28 chrX 17403521 17403768 -145196162 - MLT1J2 LTR MaLR 0 450 173 832 118 25 159 chrX 17403782 17403831 -145196099 - L1MB8 LINE L1 -6 6172 6118 1424 157 75 21 chrX 17403831 17404112 -145195818 + AluJo SINE Alu 1 296 -16 832 118 25 159 chrX 17404112 17404307 -145195623 - L1MB8 LINE L1 -60 6118 5961 1477 154 41 17 chrX 17404311 17404603 -145195327 - L1MB8 LINE L1 -154 6024 5726 658 259 6 0 chrX 17404613 17404771 -145195159 - MLT1J2 LTR MaLR -268 182 24 195 242 61 15 chrX 17404787 17404853 -145195077 - L2 LINE L2 -1367 1947 1879 1532 231 95 31 chrX 17405235 17405721 -145194209 - LTR33A LTR ERVL 0 523 7 450 148 35 112 chrX 17405776 17405818 -145194112 - L1ME2 LINE L1 -2 6332 6288 1549 162 17 24 chrX 17405818 17406108 -145193822 + AluJo SINE Alu 1 288 -24 450 148 35 112 chrX 17406108 17406208 -145193722 - L1ME2 LINE L1 -46 6288 6041 1301 166 14 0 chrX 17406215 17406426 -145193504 - MSTB LTR MaLR 0 426 213 1707 120 4 0 chrX 17406429 17406670 -145193260 - AluSq SINE Alu -69 244 3 225 320 58 46 chrX 17406996 17407148 -145192782 - MIR SINE MIR -72 136 25 1484 141 32 35 chrX 17407191 17407474 -145192456 + AluJb SINE Alu 13 294 -18 2700 235 160 30 chrX 17407775 17408606 -145191324 - L2 LINE L2 -2 3311 2258 1605 171 0 30 chrX 17408606 17408905 -145191025 + AluSx SINE Alu 1 290 -22 2700 235 160 30 chrX 17408905 17409304 -145190626 - L2 LINE L2 -1055 2258 1912 406 171 248 0 chrX 17409337 17409399 -145190531 - MER5B DNA MER1_type -47 131 86 2333 93 10 3 chrX 17409399 17409710 -145190220 - AluSq SINE Alu 0 313 1 406 171 248 0 chrX 17409710 17409752 -145190178 - MER5B DNA MER1_type -92 86 1 361 131 0 23 chrX 17410113 17410188 -145189742 + AluJb SINE Alu 84 132 -170 1466 116 48 0 chrX 17410142 17410349 -145189581 + AluJb SINE Alu 87 303 -9 863 160 47 99 chrX 17410740 17410953 -145188977 + MER105 DNA DNA 2 203 -1 2149 109 3 42 chrX 17411044 17411357 -145188573 + AluSx SINE Alu 1 301 -11 428 298 118 52 chrX 17411462 17411825 -145188105 - L1ME2 LINE L1 -123 5998 5612 198 0 0 0 chrX 17411829 17411851 -145188079 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1138 164 84 0 chrX 17411901 17412139 -145187791 - MLT2B2 LTR ERVL -4 511 254 1934 109 41 0 chrX 17412449 17412716 -145187214 - AluSx SINE Alu -34 278 1 386 194 43 50 chrX 17412718 17412857 -145187073 - L1MC5 LINE L1 -367 7594 7457 198 0 0 0 chrX 17413035 17413057 -145186873 + (A)n Simple_repeat Simple_repeat 1 22 0 1874 127 18 11 chrX 17413058 17413334 -145186596 - AluSx SINE Alu -34 278 1 207 100 0 0 chrX 17413877 17413907 -145186023 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 978 271 165 18 chrX 17413911 17414443 -145185487 - L2 LINE L2 -16 3297 2630 1405 220 106 48 chrX 17414443 17414962 -145184968 - MLT1H LTR MaLR 0 549 1 978 271 165 18 chrX 17414962 17415102 -145184828 - L2 LINE L2 -683 2630 2512 558 0 0 0 chrX 17415174 17415236 -145184694 + (TC)n Simple_repeat Simple_repeat 2 63 0 2327 100 0 7 chrX 17416011 17416312 -145183618 - AluSx SINE Alu -13 299 1 318 343 89 7 chrX 17416789 17416935 -145182995 - MIR3 SINE MIR -36 172 15 1062 165 7 130 chrX 17417792 17418077 -145181853 + AluJo SINE Alu 5 254 -58 2195 110 3 10 chrX 17418255 17418565 -145181365 - AluSx SINE Alu -4 308 1 2205 98 7 10 chrX 17418960 17419256 -145180674 - AluSx SINE Alu -14 298 4 910 164 71 38 chrX 17420090 17420146 -145179784 - MER5A DNA MER1_type 0 189 136 1825 166 0 19 chrX 17420146 17420460 -145179470 + AluJb SINE Alu 1 308 -4 910 164 71 38 chrX 17420460 17420586 -145179344 - MER5A DNA MER1_type -53 136 1 372 111 0 0 chrX 17420705 17420759 -145179171 + L1PA6 LINE L1 6092 6145 -9 334 261 0 22 chrX 17420764 17420856 -145179074 + L1MC4 LINE L1 6614 6703 -1339 210 191 0 0 chrX 17420856 17420898 -145179032 + (TG)n Simple_repeat Simple_repeat 2 43 0 3502 166 6 2 chrX 17420907 17421457 -145178473 - MER77 LTR ERV1 -36 569 18 662 221 19 6 chrX 17421728 17421886 -145178044 + L1MD1 LINE L1 5966 6125 -117 44451 43 5 0 chrX 17421901 17428022 -145171908 - L1PA4 LINE L1 0 6155 8 731 177 0 0 chrX 17428032 17428162 -145171768 + L1MD1 LINE L1 6112 6241 -1 669 102 339 0 chrX 17428214 17428341 -145171589 - Tigger2 DNA MER2_type 0 2718 2549 * 5304 142 11 25 chrX 17428338 17428731 -145171199 - Tigger2 DNA MER2_type -1863 855 458 2214 127 0 0 chrX 17428731 17429039 -145170891 - AluSx SINE Alu -4 308 1 5304 142 11 25 chrX 17429039 17429512 -145170418 - Tigger2 DNA MER2_type -2260 458 1 1328 171 5 18 chrX 17430173 17430390 -145169540 + MER20 DNA MER1_type 2 215 -4 348 250 10 40 chrX 17430872 17430921 -145169009 + CT-rich Low_complexity Low_complexity 1 50 -395 1924 87 79 0 chrX 17430921 17431174 -145168756 - AluSx SINE Alu -6 306 34 348 250 10 40 chrX 17431174 17431331 -145168599 + CT-rich Low_complexity Low_complexity 50 445 0 740 139 83 0 chrX 17431409 17431517 -145168413 - FLAM_C SINE Alu -16 117 1 355 138 23 0 chrX 17431885 17431972 -145167958 + (TG)n Simple_repeat Simple_repeat 2 90 0 1764 164 7 17 chrX 17432051 17432344 -145167586 + AluJo SINE Alu 6 295 -17 1569 202 70 17 chrX 17433137 17433681 -145166249 + L2 LINE L2 2727 3295 -18 2019 133 3 13 chrX 17433884 17434184 -145165746 - AluSx SINE Alu -15 297 1 698 253 48 9 chrX 17434390 17434697 -145165233 - MLT1J2 LTR MaLR -2 448 38 344 262 124 41 chrX 17435727 17435872 -145164058 + MIR3 SINE MIR 31 187 -21 182 349 0 16 chrX 17436075 17436138 -145163792 - L2 LINE L2 -70 3243 3182 225 304 80 45 chrX 17436274 17436386 -145163544 - L3 LINE CR1 -33 1544 1429 198 0 0 0 chrX 17436413 17436435 -145163495 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2041 112 0 0 chrX 17436438 17436707 -145163223 - AluSx SINE Alu -38 274 6 198 336 82 25 chrX 17437052 17437174 -145162756 + L3 LINE CR1 1171 1299 -278 231 293 57 57 chrX 17437224 17437347 -145162583 + L3 LINE CR1 1429 1551 -26 4278 147 53 36 chrX 17438035 17438081 -145161849 - L1MB8 LINE L1 -22 6156 6112 2269 106 3 0 chrX 17438081 17438374 -145161556 + AluSp SINE Alu 1 294 -19 4278 147 53 36 chrX 17438374 17439150 -145160780 - L1MB8 LINE L1 -66 6112 5320 2967 201 42 23 chrX 17439163 17439859 -145160071 - L1MC4 LINE L1 0 8042 7334 * 5618 203 31 33 chrX 17439855 17441236 -145158694 - L1MB8 LINE L1 -807 5339 3961 1882 148 13 31 chrX 17441315 17441633 -145158297 + AluJb SINE Alu 1 312 0 286 100 0 0 chrX 17441697 17441737 -145158193 - MADE1 DNA Mariner -1 79 40 2378 237 82 25 chrX 17441836 17442116 -145157814 - L1ME3 LINE L1 0 6162 5899 2024 133 0 3 chrX 17442116 17442416 -145157514 + AluJo SINE Alu 1 299 -13 2378 237 82 25 chrX 17442416 17442770 -145157160 - L1ME3 LINE L1 -263 5899 5486 1713 144 33 52 chrX 17442770 17443076 -145156854 - AluJb SINE Alu -12 300 1 2378 237 82 25 chrX 17443076 17443112 -145156818 - L1ME3 LINE L1 -676 5486 5453 802 286 135 68 chrX 17443312 17443590 -145156340 + L3 LINE CR1 839 1097 -480 1934 135 24 14 chrX 17443590 17443887 -145156043 + AluJb SINE Alu 1 300 -12 802 286 135 68 chrX 17443887 17444273 -145155657 + L3 LINE CR1 1097 1548 -29 675 99 0 30 chrX 17445417 17445518 -145154412 + AluSc SINE Alu 202 299 -10 480 233 117 8 chrX 17446012 17446132 -145153798 - MER94 DNA DNA 0 134 2 723 247 47 0 chrX 17446136 17446306 -145153624 - MER5B DNA MER1_type 0 178 1 1092 188 77 14 chrX 17446930 17447138 -145152792 - MER58A DNA MER1_type -3 221 1 2296 189 57 29 chrX 17447163 17447654 -145152276 - MLT1D LTR MaLR 0 505 1 402 292 83 7 chrX 17447887 17448031 -145151899 + MIR SINE MIR 87 241 -21 2349 107 0 0 chrX 17448548 17448848 -145151082 - AluSx SINE Alu -12 300 1 480 18 0 0 chrX 17449611 17449668 -145150262 + (TG)n Simple_repeat Simple_repeat 1 57 0 189 0 0 0 chrX 17449667 17449688 -145150242 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 1266 93 66 85 chrX 17449757 17449830 -145150100 - L1MB8 LINE L1 0 6178 6105 1891 162 0 3 chrX 17449830 17450127 -145149803 - AluJo SINE Alu -16 296 1 1266 93 66 85 chrX 17450127 17450312 -145149618 - L1MB8 LINE L1 -73 6105 5925 183 392 0 0 chrX 17452119 17452198 -145147732 - MIR SINE MIR -138 124 46 285 285 30 85 chrX 17452390 17452590 -145147340 - MIR3 SINE MIR -1 207 19 1877 152 0 10 chrX 17453436 17453726 -145146204 - AluJb SINE Alu -25 287 1 518 197 51 8 chrX 17453726 17453843 -145146087 - MER58 DNA MER1_type -183 158 37 1981 108 7 28 chrX 17453996 17454282 -145145648 + AluSx SINE Alu 1 280 -32 185 0 0 39 chrX 17454283 17454309 -145145621 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 318 67 0 0 chrX 17454351 17454396 -145145534 + (TG)n Simple_repeat Simple_repeat 1 45 0 650 221 32 25 chrX 17454488 17454646 -145145284 - FRAM SINE Alu -16 160 2 1291 149 14 36 chrX 17455227 17455449 -145144481 + MER20 DNA MER1_type 1 217 -2 767 285 19 27 chrX 17455505 17455768 -145144162 - MARNA DNA Mariner -68 518 258 342 296 82 15 chrX 17455817 17455952 -145143978 - MIR SINE MIR -93 169 26 807 177 100 0 chrX 17455997 17456127 -145143803 + AluJb SINE Alu 131 273 -39 236 272 7 116 chrX 17456182 17456329 -145143601 - MARNA DNA Mariner -405 181 51 21 0 0 0 chrX 17456348 17456369 -145143561 + AT_rich Low_complexity Low_complexity 1 21 0 1499 170 31 71 chrX 17456721 17456791 -145143139 + L1M3 LINE L1 5079 5150 -1021 2083 111 27 0 chrX 17456791 17457089 -145142841 + AluSq SINE Alu 1 306 -7 1499 170 31 71 chrX 17457089 17457569 -145142361 + L1M3 LINE L1 5150 5607 -564 1801 164 18 0 chrX 17457570 17457844 -145142086 + AluSx SINE Alu 2 280 -32 1620 31 0 3 chrX 17457845 17458135 -145141795 + (GAGAA)n Simple_repeat Simple_repeat 1 289 0 1295 264 64 35 chrX 17458921 17459356 -145140574 + LTR16A LTR ERVL 1 448 -2 1865 209 12 10 chrX 17459791 17460203 -145139727 + L1 LINE L1 4356 4768 -1378 540 188 0 0 chrX 17460206 17460302 -145139628 + AluJ/FRAM SINE Alu 217 312 0 1921 111 37 37 chrX 17460325 17460622 -145139308 + AluSq SINE Alu 1 297 -16 2090 148 0 3 chrX 17460623 17460927 -145139003 + AluJb SINE Alu 1 303 -9 1633 213 10 33 chrX 17460930 17461319 -145138611 + L1ME1 LINE L1 4760 5139 -1007 3926 194 30 51 chrX 17461334 17461686 -145138244 + L1ME1 LINE L1 5254 5612 -554 2326 99 0 10 chrX 17461686 17461988 -145137942 + AluSx SINE Alu 1 299 -13 3926 194 30 51 chrX 17461988 17462562 -145137368 + L1ME1 LINE L1 5612 6161 -5 351 195 0 46 chrX 17462708 17462795 -145137135 - AluJ/FLAM SINE Alu -217 85 3 2372 118 8 21 chrX 17462982 17463356 -145136574 + THE1C LTR MaLR 7 375 0 1881 268 41 13 chrX 17463494 17463583 -145136347 + L1M4b LINE L1 16 101 -6758 1378 123 50 0 chrX 17463583 17463802 -145136128 - MER30 DNA MER1_type 0 230 1 1881 268 41 13 chrX 17463802 17464179 -145135751 + L1M4b LINE L1 101 495 -6364 1850 84 0 0 chrX 17464179 17464405 -145135525 + AluSg SINE Alu 1 226 -84 870 132 7 14 chrX 17464408 17464552 -145135378 + AluSg/x SINE Alu 168 310 0 2970 207 45 69 chrX 17464554 17465308 -145134622 + L1M4b LINE L1 486 1221 -5638 * 4169 23 8 0 chrX 17465306 17465789 -145134141 - L1P LINE L1 -1491 4655 4169 7594 34 0 0 chrX 17465789 17467254 -145132676 + L1PA4 LINE L1 4689 6153 -2 2454 249 43 47 chrX 17467256 17467961 -145131969 + L1M4b LINE L1 1199 1905 -5054 2275 96 10 0 chrX 17467961 17468253 -145131677 - AluSp SINE Alu -18 295 1 2454 249 43 47 chrX 17468253 17468657 -145131273 + L1M4b LINE L1 1905 2303 -4656 2290 77 0 7 chrX 17468657 17468987 -145130943 + AluY SINE Alu 1 328 0 2454 249 43 47 chrX 17468987 17469109 -145130821 + L1M4b LINE L1 2303 2424 -4535 319 241 0 0 chrX 17469254 17469337 -145130593 + L1M4b LINE L1 2476 2558 -4580 839 304 63 16 chrX 17470577 17470955 -145128975 - L1ME4a LINE L1 -278 5843 5448 399 315 8 0 chrX 17471018 17471145 -145128785 + MIR SINE MIR 40 167 -95 1909 201 37 22 chrX 17471266 17471643 -145128287 + Charlie4a DNA MER1_type 38 425 -1536 3433 101 61 22 chrX 17471643 17472150 -145127780 - MER1A DNA MER1_type 0 527 1 1909 201 37 22 chrX 17472150 17472234 -145127696 + Charlie4a DNA MER1_type 425 506 -2 273 298 7 57 chrX 17473540 17473681 -145126249 - MIR3 SINE MIR -2 206 73 207 0 0 0 chrX 17474040 17474063 -145125867 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2145 119 13 19 chrX 17474138 17474450 -145125480 + AluSx SINE Alu 1 310 -2 186 42 62 62 chrX 17474453 17474501 -145125429 + A-rich Low_complexity Low_complexity 1 48 0 * 665 208 6 0 chrX 17474497 17474665 -145125265 + GA-rich Low_complexity Low_complexity 2 170 0 423 0 0 0 chrX 17475835 17475882 -145124048 + (TG)n Simple_repeat Simple_repeat 2 48 0 1947 138 7 0 chrX 17475882 17476164 -145123766 - AluSx SINE Alu -25 287 1 2310 100 0 31 chrX 17476480 17476594 -145123336 + AluSx SINE Alu 3 119 -193 2499 90 0 0 chrX 17476594 17476905 -145123025 + AluY SINE Alu 1 311 0 2310 100 0 31 chrX 17476905 17477110 -145122820 + AluSx SINE Alu 119 312 0 2342 99 3 3 chrX 17477992 17478304 -145121626 - AluSq SINE Alu -1 312 1 889 217 26 22 chrX 17478487 17478717 -145121213 - MIR SINE MIR -28 234 4 184 186 0 47 chrX 17478824 17478867 -145121063 - L2 LINE L2 -541 2773 2733 2056 128 0 16 chrX 17479148 17479475 -145120455 - AluSx SINE Alu 0 312 1 673 132 166 102 chrX 17479905 17480110 -145119820 + MER20 DNA MER1_type 1 218 -1 2251 110 0 13 chrX 17480232 17480542 -145119388 - AluSx SINE Alu -6 306 1 197 326 58 12 chrX 17481022 17481108 -145118822 - L2 LINE L2 -20 3252 3163 1852 239 54 6 chrX 17481236 17481733 -145118197 - L1ME2 LINE L1 -1 6163 5643 233 256 0 39 chrX 17481980 17482058 -145117872 + MIR SINE MIR 183 257 -5 2047 132 0 49 chrX 17482212 17482539 -145117391 + AluJb SINE Alu 1 311 -1 1342 150 41 0 chrX 17482895 17483115 -145116815 + MER46A DNA MER2_type 5 233 -3 2289 87 17 13 chrX 17484353 17484651 -145115279 - AluSx SINE Alu -13 299 1 1185 185 39 15 chrX 17484665 17484924 -145115006 - L1MB2 LINE L1 -8 6163 5899 1323 97 101 10 chrX 17484924 17485123 -145114807 + MER30 DNA MER1_type 10 230 0 1960 114 46 3 chrX 17485123 17485429 -145114501 - L1MB2 LINE L1 -260 5911 5593 634 124 9 9 chrX 17485432 17485545 -145114385 + (TTCTC)n Simple_repeat Simple_repeat 3 115 0 2124 96 0 31 chrX 17486122 17486413 -145113517 + AluSx SINE Alu 23 304 -8 22 35 0 0 chrX 17486487 17486516 -145113414 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chrX 17486699 17486721 -145113209 + (TG)n Simple_repeat Simple_repeat 2 23 0 2323 148 0 3 chrX 17487242 17487580 -145112350 + MER1B DNA MER1_type 1 337 0 320 257 63 69 chrX 17487928 17488103 -145111827 - MIR3 SINE MIR -5 203 30 2442 99 0 0 chrX 17488160 17488472 -145111458 + AluSx SINE Alu 1 312 0 738 184 58 35 chrX 17491028 17491202 -145108728 - MER5B DNA MER1_type 0 178 1 2046 175 16 22 chrX 17492579 17492882 -145107048 + MLT1A1 LTR MaLR 2 304 -61 2284 111 0 0 chrX 17492882 17493180 -145106750 + AluSx SINE Alu 1 298 -14 2046 175 16 22 chrX 17493180 17493242 -145106688 + MLT1A1 LTR MaLR 304 365 0 435 38 0 0 chrX 17493269 17493322 -145106608 + (CA)n Simple_repeat Simple_repeat 2 54 0 307 232 118 15 chrX 17493331 17493512 -145106418 - L1ME3A LINE L1 -207 5963 5754 2028 158 0 3 chrX 17493593 17493904 -145106026 + AluJb SINE Alu 1 310 -2 195 321 62 0 chrX 17494311 17494392 -145105538 - L2 LINE L2 -19 3253 3168 1864 145 54 7 chrX 17494815 17495112 -145104818 - AluSx SINE Alu -1 311 1 872 125 0 22 chrX 17495114 17495250 -145104680 - AluJo/FLAM SINE Alu -169 133 1 785 191 31 80 chrX 17495250 17495538 -145104392 - L1MC5 LINE L1 -30 7931 7658 2198 94 3 3 chrX 17495812 17496099 -145103831 + AluSq SINE Alu 1 287 -26 180 0 0 0 chrX 17496474 17496494 -145103436 + (A)n Simple_repeat Simple_repeat 1 20 0 234 304 35 35 chrX 17496879 17496994 -145102936 - MIR SINE MIR -72 136 22 718 191 0 0 chrX 17497308 17497423 -145102507 + FLAM_A SINE Alu 2 116 -17 2348 94 3 0 chrX 17498140 17498438 -145101492 - AluSx SINE Alu -13 299 1 930 141 0 0 chrX 17498968 17499096 -145100834 + FRAM SINE Alu 33 160 -16 2402 100 0 0 chrX 17499193 17499493 -145100437 - AluSx SINE Alu -12 300 1 2346 104 0 0 chrX 17500289 17500587 -145099343 - AluSx SINE Alu -14 298 1 267 325 0 0 chrX 17501520 17501600 -145098330 - MIR SINE MIR -137 125 46 3303 236 33 27 chrX 17501908 17503082 -145096848 + L1ME2 LINE L1 4981 6163 -1 2299 115 0 0 chrX 17503090 17503402 -145096528 + AluSx SINE Alu 1 312 0 2158 109 14 0 chrX 17504909 17505192 -145094738 + AluSx SINE Alu 1 287 -25 1793 132 68 60 chrX 17505362 17505662 -145094268 + THE1C LTR MaLR 1 306 -69 1838 161 0 10 chrX 17505662 17505961 -145093969 + AluSx SINE Alu 1 296 -16 1793 132 68 60 chrX 17505961 17506030 -145093900 + THE1C LTR MaLR 306 373 -2 432 307 127 5 chrX 17506105 17506294 -145093636 - L2 LINE L2 -673 2641 2430 2166 125 0 3 chrX 17506557 17506852 -145093078 - AluSx SINE Alu -18 294 1 1784 152 3 18 chrX 17506958 17507241 -145092689 + AluJb SINE Alu 1 279 -33 219 36 0 0 chrX 17507241 17507269 -145092661 + (GGGGA)n Simple_repeat Simple_repeat 2 29 0 366 152 0 30 chrX 17507326 17507392 -145092538 - MLT1I LTR MaLR -2 407 344 1992 140 27 0 chrX 17507807 17508099 -145091831 + AluJb SINE Alu 1 300 -12 25 31 0 0 chrX 17508168 17508200 -145091730 + AT_rich Low_complexity Low_complexity 1 32 0 486 294 127 30 chrX 17508503 17508833 -145091097 - MLT1J2 LTR MaLR -24 426 65 2124 114 0 44 chrX 17508868 17509048 -145090882 - AluSx SINE Alu -9 303 141 2332 103 0 10 chrX 17509048 17509359 -145090571 - AluSq SINE Alu -5 308 1 2124 114 0 44 chrX 17509359 17509494 -145090436 - AluSx SINE Alu -171 141 2 2244 104 0 10 chrX 17509642 17509949 -145089981 - AluSx SINE Alu -8 304 1 1311 102 11 11 chrX 17510544 17510731 -145089199 + AluJb SINE Alu 126 312 0 849 201 48 43 chrX 17510731 17510966 -145088964 + L1MC1 LINE L1 6123 6333 0 2132 104 0 3 chrX 17510996 17511293 -145088637 - AluSq SINE Alu -17 296 1 2010 129 0 3 chrX 17511303 17511598 -145088332 - AluSx SINE Alu -18 294 1 563 164 25 16 chrX 17511598 17511720 -145088210 + L1MB3 LINE L1 6059 6181 -2 1462 185 10 14 chrX 17511727 17512019 -145087911 + AluJb SINE Alu 1 291 -21 34 0 0 0 chrX 17512034 17512068 -145087862 + AT_rich Low_complexity Low_complexity 1 34 0 12374 80 34 1 chrX 17512365 17514088 -145085842 + L1PA8 LINE L1 2630 4412 -1734 7195 40 17 10 chrX 17514088 17515461 -145084469 + L1PA8 LINE L1 4780 6162 -10 615 242 28 79 chrX 17515510 17515610 -145084320 + MER3 DNA MER1_type 1 86 -123 1474 146 73 15 chrX 17515610 17515884 -145084046 - AluJb SINE Alu -22 290 1 615 242 28 79 chrX 17515884 17515998 -145083932 + MER3 DNA MER1_type 86 204 -5 326 208 14 0 chrX 17515947 17516019 -145083911 - MER3 DNA MER1_type -105 104 32 * 557 244 103 0 chrX 17517261 17517417 -145082513 - MER5B DNA MER1_type -4 174 3 1959 92 14 4 chrX 17517649 17517930 -145082000 - AluSq SINE Alu -29 284 1 198 0 0 0 chrX 17517930 17517952 -145081978 + (T)n Simple_repeat Simple_repeat 1 22 0 2309 85 0 0 chrX 17518427 17518721 -145081209 + AluSx SINE Alu 1 294 -18 2269 96 0 0 chrX 17519456 17519758 -145080172 + AluSx SINE Alu 1 302 -10 29 0 0 0 chrX 17521784 17521813 -145078117 + AT_rich Low_complexity Low_complexity 1 29 0 1557 142 30 10 chrX 17523268 17523564 -145076366 + AluY SINE Alu 1 302 -9 320 217 11 54 chrX 17524093 17524185 -145075745 - MIR3 SINE MIR -29 179 92 1862 142 3 17 chrX 17524296 17524592 -145075338 - AluJb SINE Alu -20 292 1 207 0 0 0 chrX 17524647 17524670 -145075260 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2212 87 0 0 chrX 17524682 17524970 -145074960 - AluSx SINE Alu -24 288 1 282 256 155 23 chrX 17526496 17526625 -145073305 - MER103 DNA DNA -1 165 20 2180 96 0 7 chrX 17527004 17527296 -145072634 - AluSx SINE Alu -18 294 5 216 310 28 0 chrX 17529189 17529260 -145070670 - L2 LINE L2 -39 3274 3202 310 255 21 32 chrX 17530442 17530536 -145069394 - MIR SINE MIR -120 142 50 297 199 26 41 chrX 17532259 17532347 -145067583 - MIR SINE MIR -111 97 40 239 301 106 41 chrX 17532429 17532552 -145067378 - L2 LINE L2 -15 3257 3127 1759 151 7 10 chrX 17532954 17533252 -145066678 + AluJb SINE Alu 1 297 -15 431 256 17 34 chrX 17534115 17534232 -145065698 + L2 LINE L2 3198 3312 -1 189 0 0 0 chrX 17534908 17534929 -145065001 + (GA)n Simple_repeat Simple_repeat 2 22 0 432 333 88 22 chrX 17535014 17535414 -145064516 + L1ME4a LINE L1 5614 6039 -82 807 292 114 51 chrX 17536608 17537036 -145062894 + MLT1L LTR MaLR 161 615 0 1040 144 128 0 chrX 17537633 17537821 -145062109 - AluJb SINE Alu -16 296 85 515 246 37 37 chrX 17537984 17538171 -145061759 - L1ME4a LINE L1 -2 6119 5933 391 318 59 12 chrX 17538749 17538919 -145061011 - MER5B DNA MER1_type 0 178 1 275 253 181 12 chrX 17539490 17539573 -145060357 + L2 LINE L2 3134 3230 -42 395 101 82 0 chrX 17539920 17540079 -145059851 + (TA)n Simple_repeat Simple_repeat 2 173 0 304 147 40 0 chrX 17540084 17540159 -145059771 + (TTATA)n Simple_repeat Simple_repeat 2 79 0 426 183 11 11 chrX 17540159 17540334 -145059596 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 196 179 32 16 chrX 17540348 17540471 -145059459 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 2228 83 0 0 chrX 17540471 17540760 -145059170 - AluSx SINE Alu -23 289 1 225 338 158 58 chrX 17541852 17542130 -145057800 + L2 LINE L2 2966 3271 -1 1510 143 50 60 chrX 17542724 17543025 -145056905 - AluJo SINE Alu -9 303 6 390 271 72 42 chrX 17543061 17543227 -145056703 - MIR SINE MIR -29 233 63 223 263 0 18 chrX 17543469 17543526 -145056404 - L2 LINE L2 -2 3270 3215 456 219 265 13 chrX 17543557 17543708 -145056222 + MER3 DNA MER1_type 1 189 -20 581 286 13 13 chrX 17543769 17543923 -145056007 - L2 LINE L2 -3 3269 3116 365 257 47 17 chrX 17544211 17544353 -145055577 + L1ME LINE L1 5541 5660 -461 2095 180 146 25 chrX 17544367 17545044 -145054886 - Charlie2 DNA MER1_type -28 2834 2076 2297 83 0 22 chrX 17545044 17545358 -145054572 + AluSx SINE Alu 1 307 -5 292 234 9 19 chrX 17545760 17545867 -145054063 + (CCG)n Simple_repeat Simple_repeat 3 108 0 256 184 26 40 chrX 17546171 17546247 -145053683 + G-rich Low_complexity Low_complexity 3 77 0 194 79 0 26 chrX 17546325 17546363 -145053567 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 1727 121 0 91 chrX 17546806 17547137 -145052793 - AluSx SINE Alu -9 303 3 283 75 57 0 chrX 17547225 17547278 -145052652 - L1MA7 LINE L1 -1 6290 6235 3689 79 10 0 chrX 17547278 17547758 -145052172 - L1PA13 LINE L1 -14 6149 5665 2952 80 11 6 chrX 17547758 17548215 -145051715 + L1PA13 LINE L1 5198 5656 -507 1385 132 27 81 chrX 17548222 17548517 -145051413 - L1MB8 LINE L1 0 6178 5900 263 219 78 0 chrX 17548525 17548589 -145051341 - L1MB8 LINE L1 -529 5655 5587 708 143 107 0 chrX 17548592 17548704 -145051226 - FLAM_C SINE Alu -19 124 1 1803 174 28 9 chrX 17548704 17549142 -145050788 - L1MB8 LINE L1 -571 5613 5167 867 107 0 0 chrX 17550047 17550168 -145049762 - AluJb SINE Alu -6 306 186 855 156 0 0 chrX 17550171 17550306 -145049624 - FLAM_C SINE Alu -8 135 1 447 260 194 26 chrX 17550306 17550352 -145049578 - L3 LINE CR1 -200 1377 1340 1677 158 20 17 chrX 17550352 17550649 -145049281 - AluJo SINE Alu -14 298 1 447 260 194 26 chrX 17550649 17550829 -145049101 - L3 LINE CR1 -237 1340 1113 821 148 53 12 chrX 17550858 17551027 -145048903 - L1MD1 LINE L1 0 7037 6862 2211 102 0 0 chrX 17551030 17551325 -145048605 + AluSx SINE Alu 1 295 -17 1553 113 17 0 chrX 17551325 17551564 -145048366 - L1MD1 LINE L1 -430 6724 6482 2076 105 3 3 chrX 17551567 17551862 -145048068 - AluSx SINE Alu -5 307 13 1944 114 43 0 chrX 17551885 17552184 -145047746 - AluSx SINE Alu 0 312 1 2353 223 42 17 chrX 17552184 17552826 -145047104 - L1MD1 LINE L1 -823 6118 5461 1130 235 16 29 chrX 17552818 17553129 -145046801 - L1MD1 LINE L1 -2416 4525 4219 * 4257 241 59 23 chrX 17553110 17554422 -145045508 - L1MB8 LINE L1 -1460 4686 3328 1209 224 95 86 chrX 17554483 17554644 -145045286 - L1MD1 LINE L1 -4872 1550 1392 1730 128 13 26 chrX 17554644 17554949 -145044981 + AluJb SINE Alu 1 301 -11 1209 224 95 86 chrX 17554949 17554991 -145044939 - L1MD1 LINE L1 -5030 1392 1352 1756 128 0 19 chrX 17554991 17555256 -145044674 + AluSx SINE Alu 21 280 -32 185 0 40 0 chrX 17555256 17555281 -145044649 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 1209 224 95 86 chrX 17555281 17555754 -145044176 - L1MD1 LINE L1 -5069 1353 811 547 273 137 66 chrX 17555869 17556266 -145043664 - L1MD1 LINE L1 -5518 938 540 1974 135 23 0 chrX 17556266 17556570 -145043360 - AluJo SINE Alu -1 311 1 547 273 137 66 chrX 17556570 17556715 -145043215 - L1MD1 LINE L1 -5916 540 407 985 206 5 16 chrX 17556897 17557086 -145042844 - MER5A DNA MER1_type -2 187 1 1634 134 19 86 chrX 17557230 17557544 -145042386 - AluSx SINE Alu -19 293 1 887 112 0 0 chrX 17557544 17557669 -145042261 - AluSq/x SINE Alu -177 135 11 571 255 133 53 chrX 17558045 17558347 -145041583 - L2 LINE L2 0 3313 2988 1751 151 13 16 chrX 17558544 17558670 -145041260 + AluJb SINE Alu 1 126 -186 207 0 0 0 chrX 17558670 17558693 -145041237 + (CA)n Simple_repeat Simple_repeat 2 24 0 1751 151 13 16 chrX 17558693 17558877 -145041053 + AluJb SINE Alu 126 310 -2 304 250 40 0 chrX 17558881 17558957 -145040973 + L1ME4a LINE L1 5653 5731 -390 242 306 149 33 chrX 17559085 17559206 -145040724 + L2 LINE L2 3122 3256 -16 392 176 162 14 chrX 17559208 17559350 -145040580 + L1ME4a LINE L1 5755 5917 -204 1535 144 7 48 chrX 17559555 17559847 -145040083 - AluJo SINE Alu -32 280 1 2326 89 0 0 chrX 17559852 17560156 -145039774 - AluSx SINE Alu -8 304 1 1986 139 3 7 chrX 17560661 17560970 -145038960 - AluSx SINE Alu -4 308 1 2044 93 0 48 chrX 17561108 17561419 -145038511 - AluSc SINE Alu -13 296 1 2173 81 3 44 chrX 17561420 17561741 -145038189 - AluSg SINE Alu -2 308 1 820 196 15 39 chrX 17561742 17561946 -145037984 - Charlie2 DNA MER1_type -780 2082 1884 781 159 15 8 chrX 17562118 17562250 -145037680 + FLAM_A SINE Alu 1 133 0 721 129 40 16 chrX 17562571 17562695 -145037235 - AluJb SINE Alu -179 133 7 211 325 26 13 chrX 17562718 17562795 -145037135 - MIR3 SINE MIR -44 164 87 1775 151 17 0 chrX 17562909 17563207 -145036723 + AluJb SINE Alu 1 303 -9 194 136 51 17 chrX 17566647 17566706 -145033224 + CT-rich Low_complexity Low_complexity 1 61 0 1096 140 5 48 chrX 17566891 17567108 -145032822 - MER20 DNA MER1_type -2 217 1 208 315 33 71 chrX 17567127 17567164 -145032766 + MIR SINE MIR 28 65 -197 2453 68 3 0 chrX 17567164 17567473 -145032457 - AluSq SINE Alu -3 310 1 208 315 33 71 chrX 17567473 17567619 -145032311 + MIR SINE MIR 65 204 -58 819 90 0 0 chrX 17568038 17568149 -145031781 - AluSp/q SINE Alu -15 298 188 730 135 18 0 chrX 17568149 17568260 -145031670 + AluJo/FRAM SINE Alu 180 292 -20 1869 159 32 60 chrX 17569198 17569348 -145030582 + L1MD2 LINE L1 5969 6122 -237 2054 141 0 3 chrX 17569348 17569661 -145030269 + AluJb SINE Alu 1 312 0 1869 159 32 60 chrX 17569661 17569912 -145030018 + L1MD2 LINE L1 6122 6359 0 2580 97 33 15 chrX 17570016 17570407 -145029523 + L1MA2 LINE L1 5800 6197 -107 25 31 0 0 chrX 17570554 17570586 -145029344 + AT_rich Low_complexity Low_complexity 1 32 0 1967 128 0 3 chrX 17572785 17573074 -145026856 + AluJb SINE Alu 1 288 -24 424 113 37 62 chrX 17574288 17574568 -145025362 + (TA)n Simple_repeat Simple_repeat 1 273 0 301 213 0 85 chrX 17574568 17574662 -145025268 - L1MC4 LINE L1 -1333 6709 6624 672 139 46 0 chrX 17574676 17574784 -145025146 - AluSg/x SINE Alu -17 292 180 416 285 147 48 chrX 17574786 17575098 -145024832 + L1ME4a LINE L1 5696 6038 -83 224 313 0 0 chrX 17575098 17575162 -145024768 + L2 LINE L2 3208 3271 -1 426 191 21 11 chrX 17575296 17575390 -145024540 + L1ME4a LINE L1 5956 6050 -71 2109 124 0 0 chrX 17575399 17575698 -145024232 - AluSx SINE Alu -13 299 1 316 336 18 9 chrX 17575931 17576044 -145023886 + MIR3 SINE MIR 45 158 -50 1648 136 106 23 chrX 17576552 17576854 -145023076 - MLT1A1 LTR MaLR -36 329 3 843 168 0 7 chrX 17576917 17577054 -145022876 + MLT1B LTR MaLR 1 136 -254 656 139 10 0 chrX 17577047 17577148 -145022782 + MLT1B LTR MaLR 251 352 -38 * 326 234 47 37 chrX 17578495 17578551 -145021379 - MIR SINE MIR -3 259 205 186 43 0 0 chrX 17578551 17578574 -145021356 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1482 173 0 11 chrX 17578578 17578838 -145021092 - AluJo SINE Alu -38 274 18 326 234 47 37 chrX 17578838 17578883 -145021047 - MIR SINE MIR -59 203 152 306 132 57 0 chrX 17580675 17580728 -145019202 - MLT1G LTR MaLR -32 558 503 890 271 102 11 chrX 17580828 17581156 -145018774 + LTR16A LTR ERVL 89 457 0 470 269 18 99 chrX 17581159 17581322 -145018608 - MIR SINE MIR -64 144 1 205 132 0 53 chrX 17581944 17581982 -145017948 + (GGAAA)n Simple_repeat Simple_repeat 5 40 0 658 124 0 0 chrX 17582155 17582252 -145017678 - L1PB3 LINE L1 -4 6150 6054 364 306 19 51 chrX 17582460 17582617 -145017313 - MIR3 SINE MIR -40 168 17 358 324 58 53 chrX 17583927 17584152 -145015778 - MIR SINE MIR -13 249 24 224 293 206 69 chrX 17584280 17584512 -145015418 + L2 LINE L2 1703 1902 -1412 732 162 133 40 chrX 17584512 17584541 -145015389 + MER5A DNA MER1_type 1 26 -163 186 43 0 0 chrX 17584541 17584564 -145015366 + (CAG)n Simple_repeat Simple_repeat 1 23 0 732 162 133 40 chrX 17584564 17584707 -145015223 + MER5A DNA MER1_type 26 189 0 224 293 206 69 chrX 17584707 17584933 -145014997 + L2 LINE L2 1902 2239 -1075 1469 195 30 13 chrX 17584933 17585235 -145014695 - AluJo SINE Alu -5 307 1 224 293 206 69 chrX 17585235 17585281 -145014649 + L2 LINE L2 2239 2277 -1037 180 0 0 0 chrX 17585846 17585866 -145014064 + (A)n Simple_repeat Simple_repeat 1 20 0 187 346 13 13 chrX 17586105 17586183 -145013747 + L2 LINE L2 262 339 -2975 224 325 59 73 chrX 17586252 17586609 -145013321 + L2 LINE L2 543 894 -2420 2205 83 0 3 chrX 17587118 17587447 -145012483 - AluSq SINE Alu 0 328 1 32 43 0 0 chrX 17587724 17587770 -145012160 + AT_rich Low_complexity Low_complexity 1 46 0 199 235 7 7 chrX 17587783 17587919 -145012011 + (TA)n Simple_repeat Simple_repeat 2 137 0 235 238 49 0 chrX 17588023 17588145 -145011785 + (TA)n Simple_repeat Simple_repeat 1 128 0 307 92 31 0 chrX 17588178 17588243 -145011687 + (TA)n Simple_repeat Simple_repeat 1 67 0 348 257 76 34 chrX 17588243 17588385 -145011545 + L1MC4 LINE L1 6543 6648 -1137 1605 189 0 11 chrX 17588388 17588673 -145011257 - AluJb SINE Alu -30 282 1 192 221 143 65 chrX 17589366 17589443 -145010487 - L2 LINE L2 -7 3306 3224 279 0 0 0 chrX 17589730 17589761 -145010169 + (CAG)n Simple_repeat Simple_repeat 1 31 0 781 163 16 0 chrX 17589763 17589892 -145010038 + MER5A DNA MER1_type 59 189 0 330 252 28 56 chrX 17589766 17589909 -145010021 - MER5A DNA MER1_type -50 139 1 * 194 326 0 0 chrX 17590545 17590594 -145009336 + L2 LINE L2 1852 1900 -1414 1973 125 9 41 chrX 17590908 17590981 -145008949 + L1MB2 LINE L1 5836 5910 -261 2298 67 7 0 chrX 17590981 17591280 -145008650 + AluSp SINE Alu 3 303 -10 1973 125 9 41 chrX 17591280 17591550 -145008380 + L1MB2 LINE L1 5910 6168 -3 307 254 62 54 chrX 17591667 17591797 -145008133 - MIR SINE MIR -98 164 34 244 327 63 60 chrX 17593024 17593357 -145006573 + L2 LINE L2 2919 3252 -20 1897 126 37 0 chrX 17593933 17594227 -145005703 + AluJo SINE Alu 1 305 -7 1701 135 10 61 chrX 17594743 17595055 -145004875 - AluJo SINE Alu -16 296 1 1479 233 192 13 chrX 17596657 17597130 -145002800 + MLT1G LTR MaLR 1 558 -32 219 146 0 0 chrX 17598110 17598151 -145001779 + (T)n Simple_repeat Simple_repeat 1 41 0 8785 99 21 2 chrX 17598736 17599947 -144999983 - Tigger1 DNA MER2_type 0 2418 1184 857 127 0 8 chrX 17600057 17600183 -144999747 - FLAM_C SINE Alu -17 126 2 3633 98 31 0 chrX 17600183 17600695 -144999235 - Tigger1 DNA MER2_type -1241 1177 650 405 0 0 0 chrX 17600695 17600740 -144999190 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 843 121 0 0 chrX 17600740 17600856 -144999074 - FLAM_C SINE Alu -26 117 2 4299 154 8 1 chrX 17600856 17601513 -144998417 - Tigger1 DNA MER2_type -1757 661 1 1661 50 59 0 chrX 17602332 17602552 -144997378 + AluY SINE Alu 2 234 -77 225 0 0 0 chrX 17602561 17602586 -144997344 + (A)n Simple_repeat Simple_repeat 1 25 0 1701 151 0 3 chrX 17602595 17602879 -144997051 + AluJb SINE Alu 30 312 0 214 256 200 22 chrX 17603366 17603456 -144996474 - MIR SINE MIR -70 138 33 1817 148 0 0 chrX 17606244 17606521 -144993409 - AluJo SINE Alu -29 283 7 631 145 76 0 chrX 17607805 17607936 -144991994 + L1MA8 LINE L1 6148 6288 -3 217 317 106 10 chrX 17608226 17608330 -144991600 + L2 LINE L2 3199 3312 -1 737 337 4 16 chrX 17608638 17608893 -144991037 - MIR SINE MIR -3 259 8 567 244 192 6 chrX 17609190 17609346 -144990584 - MER5A DNA MER1_type -1 188 4 236 313 71 9 chrX 17610194 17610306 -144989624 - MIR SINE MIR -14 248 130 2276 93 3 3 chrX 17610836 17611146 -144988784 - AluSx SINE Alu -2 310 1 425 284 9 26 chrX 17611524 17611640 -144988290 - L2 LINE L2 -1 3312 3199 210 342 135 9 chrX 17612249 17612360 -144987570 + L2 LINE L2 3145 3269 -3 184 363 52 37 chrX 17613083 17613218 -144986712 - L2 LINE L2 -4 3268 3132 1879 146 0 24 chrX 17613427 17613721 -144986209 - AluJb SINE Alu -23 289 3 2442 89 0 6 chrX 17613877 17614191 -144985739 - AluSx SINE Alu 0 312 1 225 65 0 0 chrX 17614494 17614525 -144985405 + (A)n Simple_repeat Simple_repeat 1 31 0 2233 105 0 10 chrX 17614937 17615241 -144984689 - AluSx SINE Alu -11 301 1 309 190 25 63 chrX 17615265 17615344 -144984586 + MER5B DNA MER1_type 2 77 -101 253 146 0 21 chrX 17615914 17615962 -144983968 + MER94 DNA DNA 54 100 -34 219 267 13 27 chrX 17616386 17616461 -144983469 - L3 LINE CR1 -101 1476 1403 584 190 56 67 chrX 17617148 17617327 -144982603 + MER5B DNA MER1_type 2 178 0 524 238 159 0 chrX 17617342 17617493 -144982437 - MER5A DNA MER1_type -6 183 9 237 345 43 17 chrX 17617510 17617626 -144982304 + L2 LINE L2 3154 3272 0 434 68 0 0 chrX 17618592 17618651 -144981279 - AluJb SINE Alu -14 298 240 1455 187 4 0 chrX 17618701 17618936 -144980994 - AluJb SINE Alu -76 236 1 309 314 71 82 chrX 17619219 17619863 -144980067 - L1MEc LINE L1 -5549 847 211 201 339 0 0 chrX 17622899 17622955 -144976975 + G-rich Low_complexity Low_complexity 5 60 0 747 264 87 20 chrX 17623501 17623755 -144976175 + MLT1L LTR MaLR 1 271 -344 585 0 0 0 chrX 17623773 17623838 -144976092 + (TG)n Simple_repeat Simple_repeat 1 65 0 399 180 0 0 chrX 17623840 17623951 -144975979 + GA-rich Low_complexity Low_complexity 2 112 0 409 187 13 0 chrX 17624081 17624156 -144975774 - L1ME1 LINE L1 -49 6117 6042 204 241 35 92 chrX 17624383 17624524 -144975406 + MIR3 SINE MIR 15 147 -61 2973 46 11 19 chrX 17624931 17625303 -144974627 + L1PA8A LINE L1 5763 6131 0 1109 182 108 8 chrX 17626826 17627084 -144972846 - MER46C DNA MER2_type -53 285 2 2201 107 0 0 chrX 17627538 17627869 -144972061 + AluSg SINE Alu 1 331 0 2584 47 3 0 chrX 17627974 17628274 -144971656 + AluY SINE Alu 1 301 -10 872 152 84 22 chrX 17628289 17628467 -144971463 - MER5A DNA MER1_type 0 189 1 216 255 0 0 chrX 17628664 17628711 -144971219 - L2 LINE L2 -2 3311 3265 909 168 10 64 chrX 17628774 17628977 -144970953 + MER20 DNA MER1_type 28 219 0 180 0 0 0 chrX 17629753 17629773 -144970157 + (T)n Simple_repeat Simple_repeat 1 20 0 2933 195 26 29 chrX 17629814 17630463 -144969467 + LTR65 LTR ERV1 1 647 -22 2757 86 44 3 chrX 17630463 17631004 -144968926 + MER51A LTR ERV1 1 634 0 200 31 62 0 chrX 17631152 17631184 -144968746 + T-rich Low_complexity Low_complexity 2 35 0 1934 134 0 11 chrX 17631698 17631982 -144967948 - AluJo SINE Alu -25 287 7 703 172 25 37 chrX 17633153 17633385 -144966545 - AluJb SINE Alu 0 312 2 445 276 6 71 chrX 17633636 17633806 -144966124 - MIR3 SINE MIR -8 200 42 2418 68 28 0 chrX 17634025 17634347 -144965583 + L1MA1 LINE L1 5963 6293 -9 24 32 0 0 chrX 17634352 17634383 -144965547 + AT_rich Low_complexity Low_complexity 1 31 0 1435 192 28 9 chrX 17634383 17634701 -144965229 + MER33 DNA MER1_type 1 324 0 884 134 17 17 chrX 17637960 17638198 -144961732 + GA-rich Low_complexity Low_complexity 1 238 0 287 311 29 0 chrX 17638357 17638472 -144961458 - MER20 DNA MER1_type -22 197 76 2538 93 30 8 chrX 17639948 17640313 -144959617 - THE1C LTR MaLR -2 373 1 207 0 0 0 chrX 17641995 17642018 -144957912 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2414 94 0 7 chrX 17642196 17642503 -144957427 + AluSg SINE Alu 1 305 -5 2015 141 34 3 chrX 17642786 17643084 -144956846 + AluJb SINE Alu 1 307 -5 2181 96 0 14 chrX 17643086 17643406 -144956524 + AluSx SINE Alu 1 312 0 2099 136 13 7 chrX 17643596 17643904 -144956026 + AluSx SINE Alu 1 310 -2 917 206 103 53 chrX 17644895 17645157 -144954773 - L1M4 LINE L1 -950 5196 4949 2486 65 0 46 chrX 17645157 17645481 -144954449 - AluY SINE Alu -2 309 1 917 206 103 53 chrX 17645481 17645590 -144954340 - L1M4 LINE L1 -1197 4949 4801 1867 181 30 0 chrX 17645590 17645921 -144954009 + MER58B DNA MER1_type 1 341 0 917 206 103 53 chrX 17645921 17645946 -144953984 - L1M4 LINE L1 -1345 4801 4779 306 270 45 36 chrX 17646381 17646492 -144953438 + L1ME4a LINE L1 5458 5569 -552 690 204 44 17 chrX 17646557 17646738 -144953192 - MIR SINE MIR 0 262 77 304 307 113 33 chrX 17646738 17646853 -144953077 + L1ME4a LINE L1 5653 5757 -364 2280 108 0 0 chrX 17646853 17647160 -144952770 + AluSx SINE Alu 1 307 -5 304 307 113 33 chrX 17647160 17647468 -144952462 + L1ME4a LINE L1 5757 6110 -11 2332 83 7 0 chrX 17647497 17647797 -144952133 + AluSx SINE Alu 2 303 -9 822 138 0 24 chrX 17648099 17648222 -144951708 - FLAM_C SINE Alu -23 120 1 306 233 39 35 chrX 17649955 17650121 -144949809 + MIR SINE MIR 23 184 -69 184 261 22 0 chrX 17650410 17650456 -144949474 + L2 LINE L2 3188 3234 -38 330 67 0 0 chrX 17650472 17650517 -144949413 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 1868 159 0 3 chrX 17650678 17650961 -144948969 - AluJb SINE Alu -30 282 1 463 269 43 0 chrX 17652463 17652604 -144947326 - MIR SINE MIR -77 185 39 211 246 49 16 chrX 17652703 17652764 -144947166 + L3 LINE CR1 843 905 -672 2134 124 0 31 chrX 17652907 17653229 -144946701 + AluSx SINE Alu 1 312 0 605 14 14 0 chrX 17704531 17704605 -144895325 + (TC)n Simple_repeat Simple_repeat 1 75 0 2175 104 0 0 chrX 17704631 17704911 -144895019 + AluY SINE Alu 5 284 -27 474 33 0 0 chrX 17704911 17704971 -144894959 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1956 157 3 3 chrX 17706109 17706408 -144893522 - AluJb SINE Alu -13 299 1 998 239 71 34 chrX 17706410 17706736 -144893194 - L1MC4 LINE L1 -139 7903 7566 930 100 0 0 chrX 17706750 17706880 -144893050 - L1MA2 LINE L1 -406 5898 5769 21 0 0 0 chrX 17706882 17706903 -144893027 + AT_rich Low_complexity Low_complexity 1 21 0 4393 94 13 8 chrX 17706903 17707511 -144892419 - L1MA2 LINE L1 0 6304 5694 1237 131 4 5 chrX 17707513 17707724 -144892206 + L1MA4A LINE L1 5931 6194 -109 1414 137 0 76 chrX 17707824 17708073 -144891857 - AluJb SINE Alu -82 230 1 333 156 56 33 chrX 17708653 17708743 -144891187 + L1P LINE L1 5302 5393 -761 5764 102 9 6 chrX 17708750 17709550 -144890380 - L1PA14 LINE L1 -37 6124 5323 2865 135 37 22 chrX 17710210 17710357 -144889573 + L1MB4 LINE L1 5678 5821 -359 1115 183 0 0 chrX 17710357 17710532 -144889398 + FAM SINE Alu 1 175 0 2865 135 37 22 chrX 17710532 17710874 -144889056 + L1MB4 LINE L1 5821 6174 -6 1403 198 57 43 chrX 17710887 17711096 -144888834 + L1MD3 LINE L1 7594 7812 -183 220 50 0 50 chrX 17711096 17711136 -144888794 + (TATAG)n Simple_repeat Simple_repeat 3 40 0 1403 198 57 43 chrX 17711136 17711294 -144888636 + L1MD3 LINE L1 7812 7966 -29 965 109 0 0 chrX 17711898 17712068 -144887862 + FLAM_C SINE Alu 1 170 0 226 240 24 54 chrX 17712138 17712224 -144887706 + MIR SINE MIR 110 193 -15 266 186 0 34 chrX 17713971 17714030 -144885900 - MER5B DNA MER1_type -7 171 115 2146 209 60 102 chrX 17714030 17714831 -144885099 + L1MC4 LINE L1 6784 7550 -492 1417 112 5 0 chrX 17714831 17715019 -144884911 + AluSx SINE Alu 1 189 -123 1362 103 0 6 chrX 17715119 17715293 -144884637 - AluSq SINE Alu -140 173 1 255 286 57 9 chrX 17715956 17716061 -144883869 + MIR SINE MIR 41 150 -58 246 108 0 0 chrX 17716251 17716288 -144883642 + MIR SINE MIR 219 255 -7 1367 71 0 12 chrX 17716771 17716941 -144882989 + AluSg1 SINE Alu 1 168 -141 494 16 0 16 chrX 17717045 17717109 -144882821 + (TG)n Simple_repeat Simple_repeat 2 64 0 295 347 41 25 chrX 17717967 17718088 -144881842 - L2 LINE L2 0 3272 3150 318 337 37 18 chrX 17718205 17718368 -144881562 - L1ME LINE L1 -386 5735 5570 239 222 0 0 chrX 17718459 17718513 -144881417 - L1ME LINE L1 -683 5438 5385 244 261 15 15 chrX 17718915 17718980 -144880950 + LTR37B LTR ERV1 12 76 -392 297 200 27 81 chrX 17719026 17719200 -144880730 + LTR37B LTR ERV1 76 242 -226 378 0 0 0 chrX 17720875 17720917 -144879013 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 264 224 149 0 chrX 17722556 17722623 -144877307 - MIR SINE MIR -64 144 68 4190 161 4 24 chrX 17723174 17723893 -144876037 + MER44D DNA MER2_type 1 705 0 441 156 0 39 chrX 17723893 17723970 -144875960 - Tigger7 DNA MER2_type -232 318 245 392 160 27 0 chrX 17724042 17724117 -144875813 - MIR SINE MIR -10 252 176 2609 165 136 4 chrX 17724222 17724744 -144875186 - L1MB7 LINE L1 -67 6117 5527 2278 237 8 9 chrX 17724742 17725371 -144874559 - L1M4 LINE L1 -2784 3362 2735 * 2227 89 0 3 chrX 17725388 17725670 -144874260 - AluY SINE Alu -30 281 1 332 222 0 0 chrX 17725670 17725733 -144874197 - L1M4 LINE L1 -3392 2754 2692 238 321 9 36 chrX 17725910 17726022 -144873908 - MIR SINE MIR -66 196 88 656 100 0 0 chrX 17726553 17726643 -144873287 - AluSg/x SINE Alu -12 298 209 1587 144 4 32 chrX 17726751 17727001 -144872929 - AluJo SINE Alu -67 245 3 2117 134 0 0 chrX 17727122 17727445 -144872485 - AluSx SINE Alu 0 323 1 2130 135 10 0 chrX 17727597 17727901 -144872029 - AluSx SINE Alu -5 307 1 455 262 8 91 chrX 17728242 17728505 -144871425 + HAL1 LINE L1 1912 2152 -355 830 188 0 0 chrX 17728505 17728649 -144871281 - MLT1C LTR MaLR 0 467 324 239 186 128 47 chrX 17728664 17728750 -144871180 + HAL1 LINE L1 2381 2473 -34 868 209 57 29 chrX 17729848 17730058 -144869872 + MER58A DNA MER1_type 1 216 -8 2278 97 0 26 chrX 17730058 17730367 -144869563 + AluSx SINE Alu 1 301 -11 2168 76 47 0 chrX 17730623 17730899 -144869031 - AluY SINE Alu -22 289 1 258 194 0 0 chrX 17730900 17730972 -144868958 - L1MB7 LINE L1 -959 5187 5116 557 120 136 24 chrX 17730977 17731112 -144868818 - MLT1D LTR MaLR -314 191 1 354 248 57 0 chrX 17731113 17731218 -144868712 + MIR SINE MIR 126 236 -26 192 77 0 0 chrX 17733343 17733369 -144866561 + (TATG)n Simple_repeat Simple_repeat 4 29 0 360 0 0 0 chrX 17734207 17734247 -144865683 + (TG)n Simple_repeat Simple_repeat 2 41 0 241 250 0 0 chrX 17734425 17734481 -144865449 - L1ME LINE L1 -395 5726 5671 1275 161 0 0 chrX 17734809 17735001 -144864929 - AluJo SINE Alu -20 292 101 215 245 164 69 chrX 17735561 17735720 -144864210 + MIR SINE MIR 72 245 -17 532 227 204 22 chrX 17736449 17736674 -144863256 + HAL1 LINE L1 1651 1916 -591 237 202 12 24 chrX 17736678 17736762 -144863168 + GA-rich Low_complexity Low_complexity 3 85 0 586 192 23 6 chrX 17736776 17736948 -144862982 + GA-rich Low_complexity Low_complexity 1 175 0 438 301 67 25 chrX 17737088 17737327 -144862603 + HAL1 LINE L1 2239 2487 -20 361 254 87 14 chrX 17737389 17737527 -144862403 - L1MC4a LINE L1 -1884 5924 5777 3118 150 58 81 chrX 17737581 17738273 -144861657 + LTR8 LTR ERV1 1 676 -15 867 302 89 27 chrX 17738617 17739068 -144860862 - L1MC4a LINE L1 -2070 5738 5260 1992 142 24 0 chrX 17739272 17739568 -144860362 + AluJb SINE Alu 1 303 -9 2038 87 6 87 chrX 17740347 17740668 -144859262 - AluSx SINE Alu -17 295 1 1345 198 62 56 chrX 17740748 17741071 -144858859 - MLT1D LTR MaLR -1 504 180 4425 162 63 22 chrX 17741083 17742025 -144857905 - L1MB4 LINE L1 0 6180 5185 1811 158 44 0 chrX 17742025 17742323 -144857607 - AluY SINE Alu 0 311 1 4425 162 63 22 chrX 17742323 17742392 -144857538 - L1MB4 LINE L1 -995 5185 5120 481 164 418 0 chrX 17742402 17742536 -144857394 - MLT1D LTR MaLR -315 190 1 588 215 82 0 chrX 17742695 17742830 -144857100 - L1MA9 LINE L1 -173 6139 5994 1502 190 105 38 chrX 17743294 17743944 -144855986 + L2 LINE L2 2422 3125 -188 21 0 0 0 chrX 17744319 17744340 -144855590 + AT_rich Low_complexity Low_complexity 1 21 0 494 226 57 0 chrX 17744371 17744495 -144855435 - MER5B DNA MER1_type -47 131 1 12057 209 49 31 chrX 17744500 17745720 -144854210 - L1MD2 LINE L1 0 6753 5557 1884 143 4 4 chrX 17745720 17745993 -144853937 + AluJb SINE Alu 1 273 -39 12057 209 49 31 chrX 17745993 17746710 -144853220 - L1MD2 LINE L1 -1196 5557 4854 1737 158 36 75 chrX 17746710 17746831 -144853099 + MER7A DNA MER2_type 2 126 -2912 2217 111 7 0 chrX 17746831 17747129 -144852801 - AluSx SINE Alu -12 300 1 1737 158 36 75 chrX 17747129 17747368 -144852562 + MER7A DNA MER2_type 126 346 0 12057 209 49 31 chrX 17747368 17748528 -144851402 - L1MD2 LINE L1 -1899 4854 3716 1711 174 0 51 chrX 17748528 17748844 -144851086 - AluJb SINE Alu -12 300 1 12057 209 49 31 chrX 17748844 17750303 -144849627 - L1MD2 LINE L1 -3037 3716 2123 2184 132 0 0 chrX 17750303 17750606 -144849324 + AluSx SINE Alu 1 303 -9 12057 209 49 31 chrX 17750606 17750729 -144849201 - L1MD2 LINE L1 -4630 2123 2004 1728 62 0 5 chrX 17750729 17750937 -144848993 - AluY SINE Alu -18 293 87 814 85 9 0 chrX 17751037 17751143 -144848787 - AluY SINE Alu -204 107 1 3887 189 63 10 chrX 17751143 17752206 -144847724 - L1MD2 LINE L1 -4529 2011 906 305 221 80 71 chrX 17752388 17752501 -144847429 - L1MD2 LINE L1 -5842 698 585 1704 191 121 14 chrX 17752540 17752998 -144846932 - MLT1E2 LTR MaLR -51 575 100 2121 113 14 0 chrX 17753141 17753434 -144846496 - AluSx SINE Alu -15 297 1 229 367 0 9 chrX 17754749 17754858 -144845072 + MIR SINE MIR 22 129 -133 2046 158 0 0 chrX 17754906 17755210 -144844720 + AluSx SINE Alu 1 304 -8 205 238 0 0 chrX 17755235 17755277 -144844653 + MIR SINE MIR 220 261 -1 1441 189 14 21 chrX 17755717 17755997 -144843933 + AluJb SINE Alu 5 282 -30 594 0 0 0 chrX 17756000 17756066 -144843864 + (CATAA)n Simple_repeat Simple_repeat 2 67 0 351 242 10 10 chrX 17756613 17756712 -144843218 + LTR37B LTR ERV1 328 426 -42 706 148 9 0 chrX 17756724 17756832 -144843098 + AluJo/FLAM SINE Alu 2 110 -202 2015 131 7 13 chrX 17756834 17757140 -144842790 + AluJo SINE Alu 3 306 -6 1155 219 144 14 chrX 17757388 17757748 -144842182 + L1ME2 LINE L1 5624 6030 -134 3613 78 74 34 chrX 17757768 17757799 -144842131 - MER41B LTR ERV1 -89 546 518 2069 92 88 0 chrX 17757799 17758082 -144841848 + AluSc SINE Alu 1 308 -1 3613 78 74 34 chrX 17758082 17758575 -144841355 - MER41B LTR ERV1 -117 518 1 471 220 47 93 chrX 17758595 17758745 -144841185 + L1ME3 LINE L1 6012 6154 -8 1847 150 24 41 chrX 17758807 17759101 -144840829 + AluJo SINE Alu 1 289 -23 2030 148 13 0 chrX 17759467 17759772 -144840158 + AluJb SINE Alu 1 309 -3 2356 94 3 0 chrX 17759842 17760141 -144839789 + AluSp SINE Alu 1 300 -13 203 306 20 10 chrX 17760614 17760712 -144839218 - MIR SINE MIR -3 259 161 336 232 171 18 chrX 17760712 17760876 -144839054 - LTR33 LTR ERVL -6 515 327 286 250 76 21 chrX 17760986 17761130 -144838800 - LTR33 LTR ERVL -332 189 38 225 350 0 51 chrX 17761437 17761594 -144838336 + C-rich Low_complexity Low_complexity 2 150 0 * 346 264 5 91 chrX 17761478 17761675 -144838255 + CT-rich Low_complexity Low_complexity 1 180 0 237 267 9 97 chrX 17761783 17762018 -144837912 + CT-rich Low_complexity Low_complexity 1 214 0 2282 85 7 36 chrX 17763081 17763388 -144836542 + AluSx SINE Alu 1 298 -14 261 139 0 0 chrX 17763930 17763973 -144835957 + (CA)n Simple_repeat Simple_repeat 2 44 0 189 0 0 0 chrX 17764444 17764465 -144835465 + (T)n Simple_repeat Simple_repeat 1 21 0 1333 223 207 29 chrX 17764654 17765190 -144834740 - MLT1G LTR MaLR 0 590 1 1855 140 3 3 chrX 17765266 17765551 -144834379 + AluJb SINE Alu 2 286 -26 408 306 65 0 chrX 17765560 17765684 -144834246 - L2 LINE L2 -5 3267 3136 2076 100 4 0 chrX 17766645 17766914 -144833016 + AluSx SINE Alu 28 297 -15 1314 201 70 72 chrX 17767179 17767399 -144832531 - L1MC5 LINE L1 -225 7736 7517 1965 118 44 30 chrX 17767399 17767695 -144832235 - AluSx SINE Alu -12 300 1 1314 201 70 72 chrX 17767695 17767991 -144831939 - L1MC5 LINE L1 -444 7517 7221 880 183 1 10 chrX 17767992 17768308 -144831622 + AluJo SINE Alu 1 280 -32 225 0 0 0 chrX 17768308 17768333 -144831597 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1221 176 51 16 chrX 17768338 17768593 -144831337 - L1MC5 LINE L1 -737 7224 6961 879 188 27 104 chrX 17768718 17769016 -144830914 - L1MC5 LINE L1 -1044 6917 6643 1868 137 46 3 chrX 17770752 17771037 -144828893 + AluSx SINE Alu 1 297 -15 2185 126 3 0 chrX 17771192 17771486 -144828444 + AluSx SINE Alu 1 295 -17 1122 127 0 0 chrX 17771592 17771750 -144828180 + AluSg/x SINE Alu 145 302 -10 296 224 60 60 chrX 17772215 17772331 -144827599 - MER5B DNA MER1_type -59 119 4 221 204 56 0 chrX 17772366 17772420 -144827510 + MER5A DNA MER1_type 40 96 -93 24 0 0 0 chrX 17773079 17773103 -144826827 + AT_rich Low_complexity Low_complexity 1 24 0 327 293 17 26 chrX 17773246 17773362 -144826568 + MIR SINE MIR 1 115 -147 2336 89 3 0 chrX 17773793 17774084 -144825846 + AluSx SINE Alu 1 292 -20 436 272 43 19 chrX 17774497 17774659 -144825271 + MIR SINE MIR 35 200 -62 1095 291 46 36 chrX 17775330 17775807 -144824123 - L1MCb LINE L1 -4992 1053 572 685 263 52 65 chrX 17776082 17776486 -144823444 - L1MCb LINE L1 -5669 376 93 2429 73 7 3 chrX 17776802 17777105 -144822825 + AluSc SINE Alu 1 304 -5 2161 111 3 43 chrX 17780106 17780251 -144819679 + AluJo SINE Alu 1 150 -162 2067 139 0 0 chrX 17780251 17780552 -144819378 + AluSx SINE Alu 1 301 -11 2161 111 3 43 chrX 17780552 17780730 -144819200 + AluJo SINE Alu 150 311 -1 247 108 31 46 chrX 17781212 17781232 -144818698 + L1MB2 LINE L1 6108 6127 -44 2249 120 0 0 chrX 17781232 17781533 -144818397 + AluSq SINE Alu 1 301 -12 247 108 31 46 chrX 17781533 17781577 -144818353 + L1MB2 LINE L1 6127 6171 0 432 104 0 0 chrX 17783134 17783201 -144816729 + (CA)n Simple_repeat Simple_repeat 1 67 0 2535 77 0 0 chrX 17783225 17783536 -144816394 + AluY SINE Alu 1 311 0 2169 47 8 0 chrX 17784041 17784295 -144815635 + AluY SINE Alu 2 257 -54 537 16 0 0 chrX 17784301 17784363 -144815567 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 26 50 0 0 chrX 17786126 17786166 -144813764 + AT_rich Low_complexity Low_complexity 1 40 0 1988 153 0 34 chrX 17786183 17786504 -144813426 - AluJo SINE Alu -2 310 1 833 202 51 0 chrX 17787404 17787582 -144812348 + MER5A DNA MER1_type 1 187 -2 2495 87 0 0 chrX 17787801 17788111 -144811819 + AluSg SINE Alu 1 310 0 200 111 28 0 chrX 17788589 17788625 -144811305 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1911 166 0 10 chrX 17788664 17788965 -144810965 + AluJb SINE Alu 1 298 -14 7886 16 0 2 chrX 17789080 17790482 -144809448 - L1PA2 LINE L1 -3 6152 4766 420 244 130 37 chrX 17790574 17790813 -144809117 + L1ME4a LINE L1 5628 5885 -236 198 91 30 0 chrX 17790890 17790923 -144809007 - MER5A DNA MER1_type -114 75 42 1827 176 3 3 chrX 17790985 17791280 -144808650 + AluJb SINE Alu 1 295 -17 791 223 56 44 chrX 17791282 17791533 -144808397 + L1MB8 LINE L1 5919 6172 -6 1221 206 117 57 chrX 17791645 17792082 -144807848 + MLT1C LTR MaLR 1 463 -4 1668 125 26 68 chrX 17792474 17792785 -144807145 + AluJb SINE Alu 1 298 -14 2269 136 29 0 chrX 17792917 17793291 -144806639 - L1MA5 LINE L1 -7 6293 5909 195 42 0 0 chrX 17794234 17794258 -144805672 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2146 93 18 14 chrX 17794261 17794541 -144805389 - AluSx SINE Alu -31 281 1 268 303 0 0 chrX 17794557 17794633 -144805297 - MIR3 SINE MIR -1 207 132 1665 140 0 38 chrX 17794900 17795165 -144804765 + AluJb SINE Alu 33 287 -25 2651 157 7 2 chrX 17795290 17795729 -144804201 + L1MB2 LINE L1 5724 6164 -7 318 206 20 103 chrX 17795889 17796035 -144803895 + L1MC5 LINE L1 7759 7892 -69 730 216 77 26 chrX 17796402 17796596 -144803334 - L1MC4a LINE L1 -1894 5914 5711 228 218 18 0 chrX 17797427 17797482 -144802448 - L2 LINE L2 -252 3061 3006 2340 116 67 84 chrX 17797582 17797758 -144802172 + MLT1C LTR MaLR 1 178 -289 960 184 0 0 chrX 17797758 17797921 -144802009 + FRAM SINE Alu 4 166 0 2340 116 67 84 chrX 17797921 17798219 -144801711 + MLT1C LTR MaLR 178 467 0 23 0 0 0 chrX 17798451 17798474 -144801456 + AT_rich Low_complexity Low_complexity 1 23 0 2237 118 0 16 chrX 17798476 17798791 -144801139 + AluSg SINE Alu 1 310 0 1890 121 43 63 chrX 17799016 17799364 -144800566 - MLT1B LTR MaLR -4 386 46 492 283 114 42 chrX 17800722 17801083 -144798847 + L1ME4a LINE L1 5653 6039 -82 1121 152 13 65 chrX 17801372 17801467 -144798463 + MER20 DNA MER1_type 1 99 -120 188 65 0 32 chrX 17801467 17801498 -144798432 + (CGGGGG)n Simple_repeat Simple_repeat 5 34 0 1121 152 13 65 chrX 17801498 17801633 -144798297 + MER20 DNA MER1_type 99 219 0 1851 167 0 20 chrX 17801706 17802006 -144797924 + AluJb SINE Alu 1 294 -18 216 0 0 0 chrX 17802006 17802030 -144797900 + (TA)n Simple_repeat Simple_repeat 2 25 0 279 246 35 53 chrX 17802075 17802189 -144797741 + MIR SINE MIR 36 147 -115 359 252 32 16 chrX 17802520 17802643 -144797287 + MIR SINE MIR 12 136 -126 398 248 25 16 chrX 17802672 17802793 -144797137 + MER94 DNA DNA 13 134 0 1897 126 10 34 chrX 17802807 17803101 -144796829 + AluJb SINE Alu 2 288 -24 2378 68 0 7 chrX 17803115 17803433 -144796497 + AluY SINE Alu 1 311 0 224 268 196 0 chrX 17803433 17803530 -144796400 + MIR SINE MIR 147 262 0 424 221 71 0 chrX 17804477 17804590 -144795340 + L1ME3A LINE L1 6042 6162 -8 461 287 134 15 chrX 17804675 17804877 -144795053 - MER112 DNA MER1_type -12 248 23 366 284 68 41 chrX 17804899 17805083 -144794847 + MIR SINE MIR 7 194 -65 641 308 80 49 chrX 17805688 17806175 -144793755 - L2 LINE L2 -4 3309 2808 306 0 0 0 chrX 17806585 17806619 -144793311 + (CA)n Simple_repeat Simple_repeat 2 35 0 2203 117 0 10 chrX 17806773 17807081 -144792849 - AluJb SINE Alu -7 305 1 208 283 80 59 chrX 17807557 17807744 -144792186 - MIR SINE MIR -55 207 17 285 301 61 39 chrX 17809917 17810146 -144789784 + MLT1K LTR MaLR 346 579 -9 920 180 68 10 chrX 17810273 17810479 -144789451 + L1MB7 LINE L1 5966 6183 -1 2050 134 0 7 chrX 17810488 17810772 -144789158 + AluSx SINE Alu 1 282 -30 1761 133 0 8 chrX 17810805 17811060 -144788870 + AluSx SINE Alu 1 253 -59 32 0 0 0 chrX 17811060 17811092 -144788838 + AT_rich Low_complexity Low_complexity 1 32 0 249 284 27 0 chrX 17811605 17811679 -144788251 + MLT2F LTR ERVL 333 408 -255 1228 190 136 8 chrX 17811947 17812205 -144787725 - AluJo SINE Alu -21 291 1 183 42 0 0 chrX 17812443 17812467 -144787463 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 1033 75 0 0 chrX 17812586 17812706 -144787224 + AluY SINE Alu 1 120 -191 1329 205 106 27 chrX 17812807 17813211 -144786719 + Charlie4a DNA MER1_type 49 484 -24 1641 181 14 24 chrX 17813266 17813559 -144786371 + AluJo SINE Alu 1 290 -22 564 95 0 0 chrX 17814081 17814165 -144785765 + (TG)n Simple_repeat Simple_repeat 2 85 0 1872 153 52 0 chrX 17814404 17814523 -144785407 + AluJb SINE Alu 3 114 -198 216 0 0 0 chrX 17814523 17814547 -144785383 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1872 153 52 0 chrX 17814547 17814714 -144785216 + AluJb SINE Alu 114 304 -8 605 276 84 21 chrX 17814741 17815027 -144784903 + L1MC4a LINE L1 5621 5924 -1884 1319 179 9 5 chrX 17816020 17816243 -144783687 - MER58A DNA MER1_type 0 224 1 213 206 0 59 chrX 17816335 17816403 -144783527 + L2 LINE L2 3015 3078 -194 184 309 43 21 chrX 17816626 17816720 -144783210 - L2 LINE L2 -825 2489 2394 1961 135 0 55 chrX 17816720 17817046 -144782884 + AluJo SINE Alu 1 308 -4 433 294 17 24 chrX 17817789 17817958 -144781972 + MIR SINE MIR 17 185 -62 581 67 45 11 chrX 17818028 17818117 -144781813 - L1PA13 LINE L1 0 6163 6072 228 130 0 43 chrX 17818147 17818193 -144781737 + MLT1E3 LTR MaLR 568 611 -13 3190 107 57 2 chrX 17818690 17819178 -144780752 - L1MB3 LINE L1 -2 6181 5667 2011 107 36 4 chrX 17819253 17819533 -144780397 + AluSc SINE Alu 1 289 -20 1410 138 35 13 chrX 17819672 17819903 -144780027 - MER46A DNA MER2_type 0 236 1 258 333 60 0 chrX 17820457 17820541 -144779389 - MIR SINE MIR -60 148 60 240 214 0 0 chrX 17821295 17821351 -144778579 + GA-rich Low_complexity Low_complexity 4 59 0 489 260 0 0 chrX 17821775 17821879 -144778051 + AluJo SINE Alu 33 136 -176 2400 77 3 0 chrX 17822465 17822788 -144777142 - AluSq SINE Alu 0 324 1 1179 117 31 0 chrX 17823653 17823849 -144776081 - L1MA6 LINE L1 0 6300 6099 711 430 0 78 chrX 17823871 17824129 -144775801 + MER8 DNA MER2_type 2 239 0 369 0 0 0 chrX 17824165 17824206 -144775724 + (CA)n Simple_repeat Simple_repeat 2 42 0 408 277 139 36 chrX 17824889 17825163 -144774767 + L1ME LINE L1 4733 5034 -1112 653 247 49 22 chrX 17825458 17825681 -144774249 + L1ME LINE L1 5519 5747 -374 218 109 65 0 chrX 17825997 17826043 -144773887 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 8674 106 27 12 chrX 17826078 17827358 -144772572 - HSMAR2 DNA Mariner -3 1299 2 1123 142 0 19 chrX 17827823 17827985 -144771945 - FRAM SINE Alu -20 156 1 1824 177 79 60 chrX 17828917 17829413 -144770517 + MLT1D LTR MaLR 1 505 0 1943 123 53 17 chrX 17831042 17831343 -144768587 + AluJo SINE Alu 1 312 0 204 244 58 23 chrX 17831682 17831768 -144768162 - L2 LINE L2 -1 3271 3183 452 202 0 39 chrX 17832550 17832654 -144767276 - MLT1A2 LTR MaLR -274 100 1 258 111 0 0 chrX 17833206 17833242 -144766688 + Tigger5 DNA MER2_type 2262 2297 -26 * 369 294 18 9 chrX 17833222 17833331 -144766599 - MER47A DNA MER2_type -256 110 1 1944 183 138 20 chrX 17833353 17833801 -144766129 + MLT1D LTR MaLR 4 504 -1 530 283 81 9 chrX 17833814 17834037 -144765893 + MLT1J LTR MaLR 68 306 -205 414 282 155 8 chrX 17834352 17834604 -144765326 + L1ME3 LINE L1 5542 5830 -332 1953 151 0 10 chrX 17834863 17835167 -144764763 - AluJb SINE Alu -11 301 1 1271 168 0 24 chrX 17835988 17836196 -144763734 - AluJb SINE Alu -109 203 1 399 190 13 0 chrX 17837122 17837201 -144762729 + MER103 DNA DNA 41 120 -46 189 0 0 0 chrX 17837680 17837701 -144762229 + (A)n Simple_repeat Simple_repeat 1 21 0 2358 106 0 0 chrX 17837713 17838024 -144761906 + AluSx SINE Alu 1 311 -1 587 204 114 48 chrX 17838224 17838391 -144761539 + MER97a DNA MER1_type? 1 178 -716 2115 152 0 0 chrX 17841076 17841385 -144758545 - AluJo SINE Alu -3 309 1 385 75 94 0 chrX 17841544 17841624 -144758306 - AluSp/q SINE Alu 0 313 229 1728 147 6 69 chrX 17842110 17842443 -144757487 + AluJb SINE Alu 1 312 0 854 213 107 0 chrX 17845989 17846158 -144753772 + MER58A DNA MER1_type 38 224 0 4682 156 19 31 chrX 17847962 17848826 -144751104 + L1MB4 LINE L1 5326 6178 -2 325 230 262 21 chrX 17848847 17849034 -144750896 - MIR SINE MIR 0 262 31 374 253 0 0 chrX 17849134 17849209 -144750721 - AluSp SINE Alu -106 197 123 2272 96 7 20 chrX 17849340 17849642 -144750288 - AluSx SINE Alu -14 298 1 2913 83 5 5 chrX 17850488 17850863 -144749067 + THE1C LTR MaLR 1 375 0 2069 90 101 0 chrX 17851220 17851498 -144748432 - AluSx SINE Alu -6 306 1 200 0 0 91 chrX 17851527 17851560 -144748370 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 774 160 0 7 chrX 17851665 17851809 -144748121 + L1M4 LINE L1 4973 5115 -1031 369 0 0 0 chrX 17851817 17851858 -144748072 + (CAA)n Simple_repeat Simple_repeat 2 42 0 360 314 38 22 chrX 17851891 17852076 -144747854 + Charlie7 DNA MER1_type 50 237 -2375 662 292 147 59 chrX 17852259 17852364 -144747566 + Charlie7 DNA MER1_type 365 459 -2153 2352 97 10 0 chrX 17852364 17852672 -144747258 + AluSq SINE Alu 1 311 -2 662 292 147 59 chrX 17852672 17853022 -144746908 + Charlie7 DNA MER1_type 459 860 -1752 1489 137 0 0 chrX 17853097 17853309 -144746621 - AluJb SINE Alu -15 297 86 181 212 0 0 chrX 17853509 17853542 -144746388 + L2 LINE L2 3267 3299 -14 1236 186 84 7 chrX 17853879 17854188 -144745742 + MER33 DNA MER1_type 1 319 -5 348 319 12 60 chrX 17855323 17855489 -144744441 - MIR3 SINE MIR -21 187 30 807 217 85 19 chrX 17855679 17855891 -144744039 + L1MB8 LINE L1 5944 6169 -9 211 258 6 101 chrX 17856302 17856512 -144743418 - MIR SINE MIR -50 212 22 264 275 38 24 chrX 17857719 17857882 -144742048 + MIR SINE MIR 33 197 -62 1197 244 82 0 chrX 17857930 17858252 -144741678 + L1ME3 LINE L1 5798 6161 -1 1207 116 0 6 chrX 17860072 17860236 -144739694 - AluSq SINE Alu -92 221 59 2237 102 3 3 chrX 17860617 17860920 -144739010 + AluSg SINE Alu 4 306 -4 237 236 106 24 chrX 17861043 17861146 -144738784 + L1MC4a LINE L1 5293 5409 -2399 2711 138 54 33 chrX 17861146 17861626 -144738304 + LTR2B LTR ERV1 1 490 0 237 236 106 24 chrX 17861626 17861645 -144738285 + L1MC4a LINE L1 5409 5425 -2383 228 156 22 0 chrX 17861745 17861790 -144738140 + (CTATA)n Simple_repeat Simple_repeat 3 48 0 1096 281 82 27 chrX 17861964 17862441 -144737489 + L1MC4a LINE L1 5423 5925 -1883 180 0 0 0 chrX 17862671 17862691 -144737239 + (T)n Simple_repeat Simple_repeat 1 20 0 1793 144 37 43 chrX 17862700 17863048 -144736882 + MER4A LTR ERV1 1 346 -318 690 150 225 67 chrX 17863068 17863335 -144736595 + MER4C LTR ERV1 157 465 0 2215 94 0 7 chrX 17863569 17863857 -144736073 + AluSx SINE Alu 1 286 -26 292 261 157 17 chrX 18064650 18064765 -144535165 - L2 LINE L2 -1 3271 3141 2625 53 0 0 chrX 18064895 18065196 -144534734 - AluY SINE Alu -9 302 2 1595 147 36 0 chrX 18065661 18065912 -144534018 + AluJo SINE Alu 1 260 -52 751 146 8 31 chrX 18065936 18066066 -144533864 + FLAM_A SINE Alu 1 127 -6 2422 132 37 42 chrX 18066156 18066226 -144533704 - L1MB7 LINE L1 -1 6183 6114 2481 46 30 7 chrX 18066226 18066528 -144533402 - AluYa5 SINE Alu -2 309 1 2422 132 37 42 chrX 18066528 18066753 -144533177 - L1MB7 LINE L1 -70 6114 5888 2233 107 23 0 chrX 18066753 18067053 -144532877 - AluSx SINE Alu -5 307 1 2422 132 37 42 chrX 18067053 18067211 -144532719 - L1MB7 LINE L1 -296 5888 5731 2379 101 0 3 chrX 18067472 18067780 -144532150 - AluSp SINE Alu -6 307 1 1998 144 3 3 chrX 18068198 18068504 -144531426 - AluSq SINE Alu -7 306 1 637 85 43 0 chrX 18068844 18068938 -144530992 + L1MA5A LINE L1 6200 6297 0 455 259 85 12 chrX 18069099 18069320 -144530610 - L1MC/D LINE L1 -384 5737 5573 1212 187 134 26 chrX 18069545 18069850 -144530080 - MER58B DNA MER1_type -3 338 1 1603 100 9 26 chrX 18069868 18070099 -144529831 + AluJo SINE Alu 86 312 0 296 312 43 0 chrX 18070226 18070319 -144529611 - MIR3 SINE MIR -12 196 100 2395 106 0 6 chrX 18070446 18070758 -144529172 + AluSx SINE Alu 1 310 -2 273 200 25 38 chrX 18070776 18070856 -144529074 + L1ME2 LINE L1 6085 6163 -1 21 36 0 0 chrX 18070869 18070897 -144529033 + AT_rich Low_complexity Low_complexity 1 28 0 827 136 0 0 chrX 18070897 18071015 -144528915 - FLAM_C SINE Alu -25 118 1 1432 164 8 16 chrX 18071630 18071807 -144528123 - AluJo SINE Alu -9 303 127 2373 95 3 0 chrX 18071807 18072103 -144527827 - AluSx SINE Alu -15 297 1 1432 164 8 16 chrX 18072103 18072175 -144527755 - AluJo SINE Alu -185 127 56 307 140 20 0 chrX 18072190 18072240 -144527690 - MER58 DNA MER1_type -13 2407 2357 * 756 179 7 14 chrX 18072235 18072375 -144527555 - MER58 DNA MER1_type -2171 249 111 2354 93 3 0 chrX 18072616 18072918 -144527012 + AluSx SINE Alu 1 303 -9 573 266 82 33 chrX 18074013 18074257 -144525673 + MIR SINE MIR 7 262 0 2359 111 0 0 chrX 18074507 18074813 -144525117 + AluSx SINE Alu 5 310 -2 753 261 75 0 chrX 18075592 18075791 -144524139 - Charlie8 DNA MER1_type -2141 276 63 577 93 0 0 chrX 18076080 18076155 -144523775 - MADE1 DNA Mariner 0 80 6 2632 110 38 33 chrX 18076575 18076767 -144523163 - L1MB2 LINE L1 -2 6169 5979 2260 109 7 0 chrX 18076767 18077069 -144522861 - AluSq SINE Alu -9 304 1 2632 110 38 33 chrX 18077069 18077105 -144522825 - L1MB2 LINE L1 -192 5979 5945 4084 161 131 3 chrX 18077105 18077837 -144522093 + LTR1B LTR ERV1 1 826 0 2632 110 38 33 chrX 18077837 18078060 -144521870 - L1MB2 LINE L1 -226 5945 5715 254 304 8 32 chrX 18078626 18078751 -144521179 + MER5B DNA MER1_type 4 125 -53 207 266 0 31 chrX 18079009 18079073 -144520857 - L2 LINE L2 -5 3308 3247 2337 68 54 3 chrX 18079078 18079372 -144520558 + AluSc SINE Alu 1 309 0 4897 74 21 3 chrX 18079389 18080048 -144519882 + L1MA2 LINE L1 5634 6304 0 861 206 38 0 chrX 18080185 18080369 -144519561 - MIR SINE MIR -43 219 29 2171 104 13 29 chrX 18080729 18081045 -144518885 - AluSx SINE Alu -1 311 1 279 0 0 0 chrX 18081690 18081721 -144518209 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1438 41 6 0 chrX 18081721 18081892 -144518038 - L1PA6 LINE L1 -18 6136 5965 675 238 42 5 chrX 18082104 18082293 -144517637 - L1ME LINE L1 -329 5792 5597 251 338 28 14 chrX 18082337 18082479 -144517451 + MIR3 SINE MIR 3 146 -62 395 259 97 73 chrX 18083463 18083710 -144516220 - MLT1L LTR MaLR 0 615 363 241 331 29 34 chrX 18083846 18084021 -144515909 - MLT1L LTR MaLR -434 181 8 4812 156 67 12 chrX 18084274 18085218 -144514712 + L1MB7 LINE L1 5193 6175 -9 2337 97 0 0 chrX 18086173 18086462 -144513468 + AluSx SINE Alu 1 289 -23 946 150 75 21 chrX 18087057 18087244 -144512686 + MER58B DNA MER1_type 1 197 -144 2843 128 14 11 chrX 18087246 18087683 -144512247 - MER39 LTR ERV1 -2 705 268 272 178 327 20 chrX 18087669 18087770 -144512160 - MER39 LTR ERV1 -575 132 1 * 290 119 0 0 chrX 18087770 18087812 -144512118 + MER58B DNA MER1_type 194 235 -106 1718 165 14 17 chrX 18087815 18087978 -144511952 - AluJb SINE Alu -16 296 133 2273 105 0 3 chrX 18087978 18088273 -144511657 - AluSg SINE Alu -16 294 1 1718 165 14 17 chrX 18088273 18088406 -144511524 - AluJb SINE Alu -179 133 1 734 167 30 15 chrX 18088406 18088538 -144511392 - AluJb SINE Alu -177 135 2 599 155 8 85 chrX 18088538 18088667 -144511263 + MER58B DNA MER1_type 223 341 0 1014 137 47 71 chrX 18088857 18088942 -144510988 - MER20 DNA MER1_type 0 219 134 1752 80 27 0 chrX 18088942 18089166 -144510764 - MER30 DNA MER1_type 0 230 1 1014 137 47 71 chrX 18089166 18089277 -144510653 - MER20 DNA MER1_type -85 134 26 1958 149 17 0 chrX 18089277 18089565 -144510365 + AluJb SINE Alu 1 293 -19 1014 137 47 71 chrX 18089565 18089578 -144510352 - MER20 DNA MER1_type -193 26 14 333 251 153 38 chrX 18090205 18090388 -144509542 - MIR SINE MIR -11 251 48 558 168 286 12 chrX 18091462 18091623 -144508307 + MER3 DNA MER1_type 1 205 -4 4827 96 20 23 chrX 18091636 18091689 -144508241 - L1PA16 LINE L1 0 6166 6114 2083 155 0 0 chrX 18091689 18091999 -144507931 - AluJb SINE Alu -2 310 1 4827 96 20 23 chrX 18091999 18092653 -144507277 - L1PA16 LINE L1 -52 6114 5461 253 271 81 55 chrX 18093913 18094334 -144505596 - L1M4 LINE L1 -757 5389 4958 1989 149 0 23 chrX 18094555 18094863 -144505067 - AluJo SINE Alu -11 301 1 201 39 0 0 chrX 18094917 18094943 -144504987 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 2084 128 0 7 chrX 18094943 18095239 -144504691 - AluSx SINE Alu -18 294 1 2111 99 35 0 chrX 18096116 18096400 -144503530 + AluSx SINE Alu 1 294 -18 1643 245 56 47 chrX 18097342 18097423 -144502507 - MER68 LTR ERV1 0 562 483 2250 95 0 0 chrX 18097423 18097728 -144502202 - AluSq SINE Alu 0 305 1 1643 245 56 47 chrX 18097728 18098197 -144501733 - MER68 LTR ERV1 -79 483 6 644 142 159 0 chrX 18098510 18098623 -144501307 - FLAM_C SINE Alu -2 131 1 303 224 122 9 chrX 18099403 18099510 -144500420 - L1ME4a LINE L1 -24 6097 5979 226 180 20 0 chrX 18099607 18099657 -144500273 - L1MC4 LINE L1 -1 8041 7991 2269 71 3 7 chrX 18099708 18100041 -144499889 - AluSg1 SINE Alu 0 332 1 1580 206 145 19 chrX 18100041 18100518 -144499412 + L1MC4 LINE L1 6777 7313 -729 216 250 74 37 chrX 18100596 18100704 -144499226 - L2 LINE L2 -3 3269 3158 469 277 118 36 chrX 18101216 18101436 -144498494 + MIR SINE MIR 24 261 -1 239 260 125 10 chrX 18101469 18101565 -144498365 + L2 LINE L2 2590 2696 -618 2082 121 24 0 chrX 18103100 18103389 -144496541 + AluSx SINE Alu 1 296 -16 2526 84 3 0 chrX 18103399 18103710 -144496220 + AluSp SINE Alu 2 313 0 9459 38 0 0 chrX 18103935 18105074 -144494856 - L1P LINE L1 -1977 4169 3031 9812 26 1 3 chrX 18105074 18106985 -144492945 + L1PA3 LINE L1 4247 6155 0 2005 122 3 17 chrX 18107001 18107295 -144492635 + AluJo SINE Alu 1 290 -22 1211 158 10 10 chrX 18107377 18107586 -144492344 + MER3 DNA MER1_type 1 209 0 1685 104 30 4 chrX 18107607 18107837 -144492093 + AluSx SINE Alu 39 274 -38 27 0 0 0 chrX 18107845 18107872 -144492058 + AT_rich Low_complexity Low_complexity 1 27 0 270 0 0 0 chrX 18107982 18108012 -144491918 + (TG)n Simple_repeat Simple_repeat 2 31 0 2627 47 0 0 chrX 18109727 18110027 -144489903 - AluY SINE Alu -11 300 1 332 165 66 44 chrX 18110816 18110907 -144489023 - MER39 LTR ERV1 -3 704 612 580 206 20 0 chrX 18110945 18111047 -144488883 + FLAM_A SINE Alu 12 115 -27 969 210 61 90 chrX 18111103 18111479 -144488451 - MER39 LTR ERV1 -83 624 260 287 125 42 0 chrX 18111464 18111512 -144488418 - MER34 LTR ERV1 -428 114 65 * 362 156 47 0 chrX 18111570 18111634 -144488296 - MER58A DNA MER1_type 0 224 158 309 200 0 0 chrX 18111634 18111684 -144488246 - MER34 LTR ERV1 -492 50 1 1086 162 29 0 chrX 18112698 18112871 -144487059 - MER58A DNA MER1_type 0 224 47 337 0 0 59 chrX 18112926 18112977 -144486953 + (TAAAA)n Simple_repeat Simple_repeat 5 52 0 511 174 11 0 chrX 18113869 18113961 -144485969 + MER96B DNA MER1_type? 2 94 -323 2349 117 59 0 chrX 18113961 18114302 -144485628 - MER46B DNA MER2_type 0 236 1 1598 171 35 11 chrX 18114310 18114597 -144485333 - L1MB5 LINE L1 -1 6173 5880 2919 87 5 35 chrX 18114598 18115000 -144484930 + LTR35 LTR ERV1 1 390 -228 456 125 14 0 chrX 18114992 18115064 -144484866 + LTR35 LTR ERV1 542 614 -4 * 1241 154 170 4 chrX 18115068 18115321 -144484609 - L1MB5 LINE L1 -292 5882 5588 336 148 0 93 chrX 18115321 18115369 -144484561 + MER96B DNA MER1_type? 82 116 -301 2437 80 0 3 chrX 18115369 18115670 -144484260 + AluSg SINE Alu 1 300 -10 336 148 0 93 chrX 18115670 18115729 -144484201 + MER96B DNA MER1_type? 116 179 -238 3827 134 34 23 chrX 18116482 18117102 -144482828 - MER41B LTR ERV1 -8 627 1 3073 154 27 20 chrX 18117193 18117744 -144482186 + LTR35 LTR ERV1 64 618 0 21 0 0 0 chrX 18117812 18117833 -144482097 + AT_rich Low_complexity Low_complexity 1 21 0 1814 171 13 7 chrX 18118163 18118461 -144481469 + AluJb SINE Alu 1 300 -12 2210 104 3 7 chrX 18118712 18119010 -144480920 + AluSg SINE Alu 1 297 -13 651 186 52 81 chrX 18119012 18119222 -144480708 - MER39 LTR ERV1 0 707 504 1541 142 0 13 chrX 18119225 18119457 -144480473 - MER4A LTR ERV1 0 664 436 1950 136 108 180 chrX 18119458 18120174 -144479756 - MER4A LTR ERV1 0 664 1 17367 83 56 19 chrX 18120182 18122758 -144477172 - MER4A-int LTR ERV1 -2 6596 3925 2239 74 81 7 chrX 18122758 18123124 -144476806 + LTR7 LTR ERV1 1 450 0 364 214 71 0 chrX 18123124 18123208 -144476722 - MER4A-int LTR ERV1 -2672 3926 3837 * 905 178 35 20 chrX 18123207 18123409 -144476521 - MER4A-int LTR ERV1 -2917 3681 3477 1063 136 90 0 chrX 18123410 18123587 -144476343 + LTR8 LTR ERV1 65 257 -434 4568 73 65 10 chrX 18123587 18124281 -144475649 - MER4A-int LTR ERV1 -4103 2495 1764 4702 89 29 27 chrX 18124295 18125223 -144474707 - MER4A-int LTR ERV1 -5580 1178 194 1170 201 139 13 chrX 18125277 18125561 -144474369 - MER4A-int LTR ERV1 -4163 2168 1265 2571 114 97 78 chrX 18125621 18126282 -144473648 - MER4A-int LTR ERV1 -5758 840 1 1241 107 11 11 chrX 18126285 18126463 -144473467 - MER4A LTR ERV1 0 664 487 4953 91 222 115 chrX 18126466 18127819 -144472111 - pTR5 LTR ERV1 -5 2433 827 466 184 7 4 chrX 18127821 18127968 -144471962 - MER4A LTR ERV1 -198 466 261 645 121 0 10 chrX 18127968 18128067 -144471863 - MER4A LTR ERV1 -566 98 1 632 249 60 63 chrX 18128073 18128375 -144471555 - MER34 LTR ERV1 -209 498 1 1479 112 19 0 chrX 18128402 18128616 -144471314 - L1PA16 LINE L1 -9 6157 5940 2063 144 0 3 chrX 18129497 18129810 -144470120 - AluSx SINE Alu 0 312 1 908 154 123 0 chrX 18129963 18130125 -144469805 + MER58A DNA MER1_type 43 224 0 1282 177 34 58 chrX 18130913 18131000 -144468930 - MER33 DNA MER1_type -2265 320 232 2063 139 20 0 chrX 18131000 18131295 -144468635 + AluSx SINE Alu 1 301 -11 1282 177 34 58 chrX 18131295 18131506 -144468424 - MER33 DNA MER1_type -2353 232 28 4113 134 60 87 chrX 18131506 18132313 -144467617 - LTR1 LTR ERV1 0 785 1 1282 177 34 58 chrX 18132313 18132341 -144467589 - MER33 DNA MER1_type -2557 28 1 1835 147 97 91 chrX 18132370 18132420 -144467510 - MER31B LTR ERV1 0 466 418 1794 157 11 4 chrX 18132420 18132751 -144467179 + AluJb SINE Alu 2 334 0 1835 147 97 91 chrX 18132751 18133162 -144466768 - MER31B LTR ERV1 -48 418 1 1359 145 37 0 chrX 18133446 18133660 -144466270 - AluJb SINE Alu -9 303 82 1950 157 0 3 chrX 18134208 18134502 -144465428 + AluJb SINE Alu 1 293 -19 1921 168 23 17 chrX 18135147 18135499 -144464431 + MLT1A1 LTR MaLR 1 354 -11 289 189 7 122 chrX 18136693 18136841 -144463089 + L1ME4a LINE L1 5991 6121 0 2445 71 0 0 chrX 18136844 18137141 -144462789 + AluY SINE Alu 1 297 -14 2467 81 0 3 chrX 18137231 18137540 -144462390 - AluSx SINE Alu 0 312 5 1695 191 10 3 chrX 18137551 18137839 -144462091 - AluJo SINE Alu -21 291 2 564 314 126 34 chrX 18137963 18138477 -144461453 - L1ME3A LINE L1 -291 5879 5279 345 140 0 0 chrX 18138477 18138534 -144461396 + (TG)n Simple_repeat Simple_repeat 2 58 0 768 105 32 8 chrX 18138535 18138659 -144461271 - L1MB8 LINE L1 -3 6175 6049 880 140 29 0 chrX 18138660 18138796 -144461134 + FLAM_C SINE Alu 1 140 -3 889 145 86 43 chrX 18138796 18138982 -144460948 - L1MB8 LINE L1 -124 6054 5861 2714 25 0 22 chrX 18139072 18139387 -144460543 + AluY SINE Alu 1 308 -3 242 264 40 32 chrX 18139537 18139662 -144460268 + L1ME4a LINE L1 5947 6072 -49 1068 184 6 0 chrX 18139882 18140061 -144459869 - MER5A DNA MER1_type -9 180 1 677 220 58 65 chrX 18140066 18140208 -144459722 - L1MC5 LINE L1 -151 7810 7669 2478 65 0 3 chrX 18140208 18140514 -144459416 + AluY SINE Alu 1 305 -6 677 220 58 65 chrX 18140514 18140594 -144459336 - L1MC5 LINE L1 -292 7669 7590 432 37 0 0 chrX 18140594 18140648 -144459282 + (TA)n Simple_repeat Simple_repeat 2 55 0 677 220 58 65 chrX 18140648 18140733 -144459197 - L1MC5 LINE L1 -371 7590 7504 2557 61 0 13 chrX 18140747 18141057 -144458873 + AluSg1 SINE Alu 1 306 -3 808 165 8 8 chrX 18141746 18141873 -144458057 - FLAM_A SINE Alu -6 127 1 189 0 0 0 chrX 18142426 18142447 -144457483 + (TG)n Simple_repeat Simple_repeat 1 21 0 373 182 71 83 chrX 18142518 18142671 -144457259 - MLT1I LTR MaLR 0 538 316 213 178 0 0 chrX 18143844 18143889 -144456041 + GA-rich Low_complexity Low_complexity 2 46 0 580 224 235 0 chrX 18144026 18144222 -144455708 - LTR33 LTR ERVL -1 520 279 2016 221 24 44 chrX 18144222 18144725 -144455205 + MLT2B1 LTR ERVL 28 520 0 611 283 116 17 chrX 18144738 18144971 -144454959 - LTR33 LTR ERVL -252 269 14 1486 106 0 14 chrX 18145341 18145588 -144454342 - AluSg/x SINE Alu 0 326 83 861 105 0 0 chrX 18145588 18145702 -144454228 - AluSq SINE Alu -63 250 137 2390 92 0 0 chrX 18145705 18146011 -144453919 - AluSx SINE Alu -6 306 1 427 265 142 35 chrX 18146094 18146436 -144453494 - L1ME3A LINE L1 -262 5904 5535 * 1297 257 66 43 chrX 18146434 18146495 -144453435 + L1ME3A LINE L1 5129 5187 -983 2487 157 80 5 chrX 18146495 18146922 -144453008 - LOR1b LTR ERV1 0 461 3 1297 257 66 43 chrX 18146922 18147069 -144452861 + L1ME3A LINE L1 5187 5329 -841 1751 186 7 0 chrX 18147069 18147359 -144452571 + AluJb SINE Alu 1 292 -20 1297 257 66 43 chrX 18147359 18147767 -144452163 + L1ME3A LINE L1 5329 5759 -411 1000 301 22 6 chrX 18147775 18148097 -144451833 + L1ME3A LINE L1 5836 6162 -8 402 227 194 26 chrX 18148110 18148333 -144451597 + L1M4 LINE L1 2848 3137 -3009 3953 92 0 8 chrX 18148333 18148846 -144451084 - L1PA13 LINE L1 -10 6153 5645 402 227 194 26 chrX 18148846 18148926 -144451004 + L1M4 LINE L1 3137 3202 -2944 374 252 71 47 chrX 18149024 18149151 -144450779 - L2 LINE L2 -608 2706 2577 415 266 136 39 chrX 18149264 18149572 -144450358 - L1ME3A LINE L1 -1169 4977 4640 26 0 0 0 chrX 18149976 18150002 -144449928 + AT_rich Low_complexity Low_complexity 1 26 0 485 165 204 0 chrX 18150002 18150105 -144449825 - FLAM_A SINE Alu -18 124 1 4108 137 36 19 chrX 18150339 18150800 -144449130 + LTR58 LTR ERV1 1 478 -201 2653 104 25 3 chrX 18150800 18151156 -144448774 + THE1B LTR MaLR 1 364 0 4108 137 36 19 chrX 18151156 18151360 -144448570 + LTR58 LTR ERV1 478 677 -2 416 224 31 57 chrX 18151826 18152008 -144447922 + LTR8 LTR ERV1 1 149 -392 1156 205 100 44 chrX 18152121 18152554 -144447376 + LTR8A LTR ERV1 116 678 -49 537 260 11 55 chrX 18152765 18152946 -144446984 - MER5B DNA MER1_type 0 178 6 902 177 0 0 chrX 18153336 18153466 -144446464 - FLAM_A SINE Alu -2 131 2 22 0 0 0 chrX 18153759 18153781 -144446149 + AT_rich Low_complexity Low_complexity 1 22 0 1075 149 6 0 chrX 18153855 18154036 -144445894 + L1MA6 LINE L1 6004 6185 -115 1287 171 5 5 chrX 18154044 18154261 -144445669 + AluJb SINE Alu 84 300 -12 449 81 102 0 chrX 18154267 18154363 -144445567 + L1MA6 LINE L1 6173 6297 0 2423 40 40 10 chrX 18154414 18154716 -144445214 + AluY SINE Alu 1 311 0 963 225 67 117 chrX 18154887 18155323 -144444607 - MLT1J LTR MaLR -94 417 4 1523 221 82 26 chrX 18156723 18157140 -144442790 + LTR16C LTR ERVL 41 480 -11 181 238 69 59 chrX 18157423 18157524 -144442406 - L2 LINE L2 -2708 606 505 336 281 41 33 chrX 18158554 18158675 -144441255 - L1MDa LINE L1 -6217 323 202 1839 143 6 61 chrX 18158803 18159131 -144440799 - AluJo SINE Alu -2 310 1 2454 74 3 0 chrX 18159142 18159438 -144440492 - AluSc SINE Alu -12 297 1 339 312 0 50 chrX 18159442 18159480 -144440450 - L1MDa LINE L1 -6373 167 129 2237 170 135 18 chrX 18159480 18159932 -144439998 + MLT1D LTR MaLR 1 505 0 339 312 0 50 chrX 18159932 18160034 -144439896 - L1MDa LINE L1 -6411 129 34 406 202 175 0 chrX 18160094 18160208 -144439722 - L1MC4a LINE L1 -939 6869 6736 205 254 16 16 chrX 18160497 18160560 -144439370 + L2 LINE L2 3202 3264 -8 1047 170 179 5 chrX 18160578 18160790 -144439140 + AluJo SINE Alu 1 249 -63 1263 165 64 76 chrX 18161241 18161324 -144438606 - MER33 DNA MER1_type -2261 324 241 824 185 23 0 chrX 18161324 18161454 -144438476 + FLAM_A SINE Alu 1 133 0 1263 165 64 76 chrX 18161454 18161655 -144438275 - MER33 DNA MER1_type -2344 241 42 1960 112 135 0 chrX 18161655 18161959 -144437971 - L1PA16 LINE L1 -9 6157 5813 1263 165 64 76 chrX 18161959 18162001 -144437929 - MER33 DNA MER1_type -2543 42 1 255 222 0 0 chrX 18162044 18162089 -144437841 + polypyrimidine Low_complexity Low_complexity 2 46 0 618 194 36 0 chrX 18162095 18162149 -144437781 + CT-rich Low_complexity Low_complexity 4 55 -119 2610 41 0 25 chrX 18162149 18162467 -144437463 - AluY SINE Alu -1 310 1 618 194 36 0 chrX 18162467 18162577 -144437353 + CT-rich Low_complexity Low_complexity 55 174 0 189 0 0 0 chrX 18162636 18162657 -144437273 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1926 160 3 0 chrX 18163622 18163916 -144436014 + 7SLRNA srpRNA srpRNA 5 299 -21 239 163 0 61 chrX 18164505 18164554 -144435376 + L2 LINE L2 3266 3311 -2 347 274 144 0 chrX 18164759 18164912 -144435018 + MIR SINE MIR 85 259 -3 666 118 8 16 chrX 18165056 18165183 -144434747 + (TA)n Simple_repeat Simple_repeat 2 127 0 2494 275 67 64 chrX 18165902 18167478 -144432452 + L1MEd LINE L1 32 1730 -760 1909 149 0 17 chrX 18167657 18167959 -144431971 + AluJo SINE Alu 3 299 -13 2483 76 3 0 chrX 18167993 18168294 -144431636 - AluSp SINE Alu -11 302 1 2306 58 41 7 chrX 18168459 18168753 -144431177 + AluYa5 SINE Alu 1 304 -7 654 241 89 29 chrX 18170745 18171061 -144428869 + L1MC5 LINE L1 7324 7658 -303 2411 77 3 6 chrX 18171232 18171543 -144428387 - L1PB1 LINE L1 0 6151 5842 811 289 50 4 chrX 18172405 18172644 -144427286 - MIR SINE MIR -11 251 2 204 393 45 24 chrX 18172892 18173223 -144426707 + L2 LINE L2 858 1195 -2119 272 335 72 29 chrX 18173580 18173858 -144426072 + L1MEd LINE L1 274 563 -5556 507 264 27 0 chrX 18173868 18174016 -144425914 + L1M4 LINE L1 4134 4285 -1861 507 311 6 6 chrX 18174491 18174658 -144425272 + L2 LINE L2 1777 1943 -1371 498 155 0 0 chrX 18174927 18174998 -144424932 + AluJ/FLAM SINE Alu 3 73 -239 417 125 0 0 chrX 18175013 18175069 -144424861 - FLAM_A SINE Alu -44 98 43 1869 162 3 25 chrX 18175191 18175505 -144424425 + AluJo SINE Alu 1 307 -5 225 65 0 0 chrX 18175512 18175543 -144424387 + (CA)n Simple_repeat Simple_repeat 2 32 0 1619 154 58 58 chrX 18175645 18176022 -144423908 - LTR8A LTR ERV1 0 727 351 1078 82 7 7 chrX 18176039 18176185 -144423745 + THE1C LTR MaLR 230 375 0 10220 120 61 9 chrX 18176185 18177687 -144422243 + THE1C-int LTR MaLR 1 1580 0 2208 111 44 75 chrX 18177687 18178074 -144421856 + THE1C LTR MaLR 1 375 0 2260 105 6 12 chrX 18178084 18178408 -144421522 - LTR8A LTR ERV1 -405 322 1 784 149 0 78 chrX 18179835 18179976 -144419954 - FLAM_C SINE Alu -3 130 1 1761 136 40 4 chrX 18180340 18180613 -144419317 - L1PA16 LINE L1 -2 6164 5882 24224 131 10 31 chrX 18180613 18181904 -144418026 - L1 LINE L1 -3228 4337 3020 2229 81 3 20 chrX 18181904 18182202 -144417728 - AluSc SINE Alu -16 293 1 24224 131 10 31 chrX 18182202 18182921 -144417009 - L1 LINE L1 -4545 3020 2287 2511 74 0 13 chrX 18182921 18183233 -144416697 + AluY SINE Alu 1 308 -3 24224 131 10 31 chrX 18183233 18184882 -144415048 - L1 LINE L1 -5278 2287 785 2645 138 52 2 chrX 18184882 18185289 -144414641 + MSTA LTR MaLR 2 428 0 24224 131 10 31 chrX 18185289 18186050 -144413880 - L1 LINE L1 -6780 785 9 1109 247 50 18 chrX 18186062 18186341 -144413589 - MLT1F1 LTR MaLR -277 290 3 228 86 0 29 chrX 18186394 18186429 -144413501 - MLT1F1 LTR MaLR -529 38 5 5362 111 4 13 chrX 18186795 18187313 -144412617 - L1PA14 LINE L1 0 6161 5651 2912 92 77 12 chrX 18187313 18187715 -144412215 + MSTA LTR MaLR 1 428 0 5362 111 4 13 chrX 18187715 18187961 -144411969 - L1PA14 LINE L1 -510 5651 5404 4698 111 23 50 chrX 18238940 18238996 -144360934 - MER4D LTR ERV1 0 830 774 2174 101 7 3 chrX 18238996 18239292 -144360638 + AluSx SINE Alu 1 297 -15 4698 111 23 50 chrX 18239292 18240146 -144359784 - MER4D LTR ERV1 -56 774 1 1235 165 33 0 chrX 18240576 18240788 -144359142 - MER20 DNA MER1_type 0 219 1 214 294 0 15 chrX 18241242 18241310 -144358620 - L2 LINE L2 -3 3310 3244 834 207 188 68 chrX 18241316 18241789 -144358141 + MLT1H LTR MaLR 12 541 -8 825 268 84 0 chrX 18241943 18242156 -144357774 + MIR SINE MIR 11 241 -21 4826 119 31 21 chrX 18242673 18243491 -144356439 - L1MA7 LINE L1 -2 6289 5464 264 321 16 16 chrX 18243550 18243677 -144356253 - MIR SINE MIR -67 141 32 1787 216 66 14 chrX 18243679 18244260 -144355670 - L1ME3A LINE L1 -271 5899 5282 381 319 35 58 chrX 18244354 18244392 -144355538 - L2 LINE L2 -475 2839 2802 1145 191 51 38 chrX 18244392 18244707 -144355223 + MER33 DNA MER1_type 2 320 -4 381 319 35 58 chrX 18244707 18244928 -144355002 - L2 LINE L2 -512 2802 2586 510 229 53 29 chrX 18245185 18245355 -144354575 - L2 LINE L2 -504 2810 2637 585 266 39 19 chrX 18245364 18245620 -144354310 - L1ME LINE L1 -349 5772 5512 3065 52 0 25 chrX 18246013 18246416 -144353514 + L1PA8 LINE L1 5780 6172 0 1012 269 36 36 chrX 18247081 18247299 -144352631 + L2 LINE L2 469 686 -2628 3232 168 42 25 chrX 18247299 18247562 -144352368 + MER82 DNA MER2_type 1 258 -395 204 67 0 0 chrX 18247562 18247592 -144352338 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3232 168 42 25 chrX 18247592 18247666 -144352264 + MER82 DNA MER2_type 258 329 -324 1921 140 0 36 chrX 18247666 18247973 -144351957 - AluJb SINE Alu -16 296 1 3232 168 42 25 chrX 18247973 18248276 -144351654 + MER82 DNA MER2_type 329 653 0 1012 269 36 36 chrX 18248276 18248392 -144351538 + L2 LINE L2 685 803 -2511 400 223 182 8 chrX 18248521 18248642 -144351288 + MLT1B LTR MaLR 30 171 -219 861 206 5 39 chrX 18248718 18248922 -144351008 + MLT1B LTR MaLR 194 390 0 314 215 141 15 chrX 18249131 18249266 -144350664 - L1ME4a LINE L1 -6 6115 5964 264 326 136 19 chrX 18249284 18249658 -144350272 - LTR67 LTR ERVL -7 550 133 701 325 21 0 chrX 18249929 18250215 -144349715 - ERVL LTR ERVL -420 5344 5053 724 224 145 0 chrX 18250363 18250542 -144349388 - MIR SINE MIR -38 224 20 328 275 141 0 chrX 18250591 18250733 -144349197 - ERVL LTR ERVL -3028 2736 2575 435 248 67 9 chrX 18250734 18250839 -144349091 + L2 LINE L2 3203 3313 0 1127 312 87 31 chrX 18250841 18251449 -144348481 - ERVL LTR ERVL -3038 1958 1870 259 243 135 18 chrX 18252293 18252404 -144347526 - LTR67 LTR ERVL -5 552 429 241 179 18 18 chrX 18252775 18252831 -144347099 - LTR65 LTR ERV1 -272 397 342 1955 214 21 43 chrX 18253081 18253596 -144346334 - MLT1D LTR MaLR 0 505 2 2163 139 67 31 chrX 18254895 18255312 -144344618 - MSTB1 LTR MaLR 0 432 1 927 238 98 47 chrX 18256399 18256871 -144343059 + MLT1H LTR MaLR 12 549 0 2124 103 0 4 chrX 18256907 18257180 -144342750 + AluSg SINE Alu 24 295 -15 2670 71 23 25 chrX 18257261 18257655 -144342275 + L1PB1 LINE L1 5758 6150 -1 1978 144 0 3 chrX 18259381 18259666 -144340264 + AluJb SINE Alu 1 284 -28 520 296 61 15 chrX 18259822 18260018 -144339912 + MIR SINE MIR 58 262 0 284 298 174 12 chrX 18260815 18260976 -144338954 - MIR SINE MIR -56 206 20 208 332 82 74 chrX 18261632 18261984 -144337946 + L2 LINE L2 2623 2977 -337 301 140 0 0 chrX 18262013 18262063 -144337867 - MER103 DNA DNA -115 51 2 336 254 27 36 chrX 18262092 18262202 -144337728 + LTR33 LTR ERVL 1 109 -412 1653 132 61 103 chrX 18262214 18262623 -144337307 + MLT2C1 LTR ERVL 6 397 0 440 296 25 6 chrX 18262737 18262899 -144337031 + LTR33 LTR ERVL 255 419 -102 541 57 0 0 chrX 18262903 18262973 -144336957 + MER11B LTR ERVK 1 70 -1166 7008 93 7 24 chrX 18263012 18264088 -144335842 - MER11C LTR ERVK -14 1057 1 302 221 63 11 chrX 18264092 18264187 -144335743 + LTR33 LTR ERVL 422 521 0 182 314 73 32 chrX 18264277 18264401 -144335529 - L2 LINE L2 -200 3072 2944 279 274 69 39 chrX 18264417 18264519 -144335411 - MIR SINE MIR -39 223 119 271 236 79 0 chrX 18264719 18264808 -144335122 - L1ME4a LINE L1 -9 6112 6017 2878 103 29 7 chrX 18264808 18265227 -144334703 + MSTA LTR MaLR 1 428 0 1045 185 5 54 chrX 18265322 18265488 -144334442 - MER20 DNA MER1_type -4 215 61 2330 100 0 3 chrX 18265488 18265797 -144334133 - AluSq SINE Alu -5 308 1 1045 185 5 54 chrX 18265797 18265852 -144334078 - MER20 DNA MER1_type -158 61 5 401 250 113 82 chrX 18265852 18266087 -144333843 - L1ME4a LINE L1 -240 5881 5634 2423 83 0 13 chrX 18266087 18266400 -144333530 - AluSg1 SINE Alu 0 309 1 401 250 113 82 chrX 18266400 18266456 -144333474 - L1ME4a LINE L1 -487 5634 5581 2248 115 0 3 chrX 18266829 18267134 -144332796 + AluSx SINE Alu 1 304 -8 513 293 7 7 chrX 18267321 18267468 -144332462 + MIR3 SINE MIR 45 191 -17 712 241 6 29 chrX 18267789 18267963 -144331967 + L2 LINE L2 3144 3313 0 1873 117 103 3 chrX 18268136 18268418 -144331512 - AluSx SINE Alu -2 310 1 752 236 122 46 chrX 18269333 18269681 -144330249 + MLT1J1 LTR MaLR 1 444 -6 1744 218 89 7 chrX 18271581 18272154 -144327776 - MER114 LTR ERV 0 648 29 17953 109 19 15 chrX 18272337 18275045 -144324885 - Tigger2 DNA MER2_type 0 2718 1 2093 99 42 3 chrX 18275075 18275358 -144324572 - AluSx SINE Alu -18 294 1 225 0 0 0 chrX 18275423 18275448 -144324482 + (TA)n Simple_repeat Simple_repeat 1 25 0 55 66 0 8 chrX 18275450 18275478 -144324452 + AT_rich Low_complexity Low_complexity 1 28 -93 3024 94 19 0 chrX 18275478 18275904 -144324026 - L1PA16 LINE L1 -9 6157 5724 55 66 0 8 chrX 18275904 18275997 -144323933 + AT_rich Low_complexity Low_complexity 28 121 0 234 218 18 0 chrX 18276003 18276058 -144323872 - MER94 DNA DNA -78 56 1 237 33 0 0 chrX 18276084 18276114 -144323816 + (T)n Simple_repeat Simple_repeat 1 30 0 1151 207 13 20 chrX 18276114 18276502 -144323428 - L1HS LINE L1 0 6155 5766 1448 147 12 0 chrX 18276616 18276867 -144323063 - Tigger1 DNA MER2_type -2162 256 3 344 40 20 0 chrX 18278576 18278626 -144321304 + (TG)n Simple_repeat Simple_repeat 2 52 0 1743 205 92 36 chrX 18280682 18281160 -144318770 + MLT1D LTR MaLR 1 505 0 214 354 122 36 chrX 18282406 18283332 -144316598 - L2 LINE L2 -1340 1974 969 310 328 23 8 chrX 18283348 18283479 -144316451 - MIR SINE MIR -70 192 60 479 245 10 0 chrX 18283878 18283976 -144315954 - MIR SINE MIR -124 138 40 654 286 127 67 chrX 18283982 18284879 -144315051 - L1M4 LINE L1 -2461 3685 2735 331 360 0 0 chrX 18285324 18285477 -144314453 + MERVL LTR ERVL 5181 5333 -152 2572 183 60 56 chrX 18285531 18286153 -144313777 + MLT1E3 LTR MaLR 1 624 0 599 231 192 26 chrX 18286461 18286597 -144313333 + LTR50 LTR ERVL 17 129 -666 4076 140 9 2 chrX 18286597 18287227 -144312703 - MER41B LTR ERV1 0 635 1 599 231 192 26 chrX 18287227 18287324 -144312606 + LTR50 LTR ERVL 129 289 -506 378 207 70 0 chrX 18287473 18287609 -144312321 + LTR33A LTR ERVL 404 520 -3 215 323 15 0 chrX 18288358 18288423 -144311507 - L2 LINE L2 -1388 1926 1861 502 229 73 82 chrX 18288427 18288879 -144311051 + PABL_B LTR ERV1 1 592 -75 391 161 9 125 chrX 18288881 18288993 -144310937 + PABL_B LTR ERV1 494 592 -75 818 168 11 70 chrX 18288995 18289180 -144310750 + PABL_B LTR ERV1 494 667 0 321 310 14 0 chrX 18289307 18289449 -144310481 + HAL1 LINE L1 1692 1835 -672 2698 136 50 48 chrX 18289458 18290015 -144309915 + LTR49 LTR ERV1 1 558 -37 743 238 93 26 chrX 18290044 18290388 -144309542 + HAL1 LINE L1 1994 2360 -147 986 146 7 0 chrX 18290388 18290532 -144309398 + AluJb SINE Alu 1 145 -167 2494 184 83 30 chrX 18290537 18291166 -144308764 - LTR8A LTR ERV1 0 727 66 987 111 0 33 chrX 18291291 18291444 -144308486 + AluJb SINE Alu 147 294 -18 348 174 101 114 chrX 18291449 18291598 -144308332 + HAL1 LINE L1 2353 2499 -8 281 262 43 35 chrX 18291618 18291759 -144308171 + L1ME4a LINE L1 5974 6115 -6 387 101 87 0 chrX 18291875 18291944 -144307986 + LTR39 LTR ERV1 1 75 -708 3094 160 19 72 chrX 18291970 18292690 -144307240 - LTR8 LTR ERV1 -9 682 1 1868 99 18 0 chrX 18292690 18292962 -144306968 + LTR39 LTR ERV1 72 348 -435 361 88 15 15 chrX 18292963 18293031 -144306899 - L1PA2 LINE L1 0 6155 6088 31483 42 2 2 chrX 18293142 18297206 -144302724 - L1P LINE L1 -2083 4063 2 775 254 75 42 chrX 18297201 18297587 -144302343 - L1M4 LINE L1 -1727 4419 4021 * 193 393 8 17 chrX 18297587 18297704 -144302226 + L2 LINE L2 2969 3084 -188 1324 177 130 107 chrX 18297822 18298424 -144301506 + LTR8 LTR ERV1 1 719 -8 333 351 14 47 chrX 18298640 18298851 -144301079 + MLT1I LTR MaLR 34 237 -172 3928 108 31 0 chrX 18298883 18299460 -144300470 - LTR49 LTR ERV1 0 595 1 258 270 0 14 chrX 18299545 18299619 -144300311 + MLT1I LTR MaLR 331 403 -6 2518 179 55 109 chrX 18299775 18300136 -144299794 - LTR8A LTR ERV1 0 727 429 2362 109 0 0 chrX 18300136 18300438 -144299492 - AluSc SINE Alu -7 302 1 2518 179 55 109 chrX 18300438 18300845 -144299085 - LTR8A LTR ERV1 -298 429 1 250 284 30 41 chrX 18300886 18301055 -144298875 + MLT1J LTR MaLR 1 167 -344 2596 133 42 3 chrX 18301223 18301770 -144298160 + LTR29 LTR ERV1 1 622 0 245 264 33 99 chrX 18301778 18301990 -144297940 + MLT1J LTR MaLR 314 511 0 979 168 26 11 chrX 18302006 18302196 -144297734 - MER20 DNA MER1_type 0 219 27 259 308 11 0 chrX 18302202 18302293 -144297637 + L2 LINE L2 2183 2274 -1040 261 0 0 0 chrX 18302663 18302692 -144297238 + (TG)n Simple_repeat Simple_repeat 1 29 0 239 114 23 0 chrX 18302700 18302744 -144297186 + GA-rich Low_complexity Low_complexity 2 46 0 2374 156 23 0 chrX 18303202 18303592 -144296338 - LTR39 LTR ERV1 0 783 385 693 145 22 0 chrX 18304104 18304242 -144295688 - MER53 DNA DNA 0 189 49 542 120 33 0 chrX 18304244 18304336 -144295594 - MER53 DNA DNA -94 95 1 612 93 0 0 chrX 18305575 18305672 -144294258 - L1 LINE L1 -1827 4319 4223 385 250 189 20 chrX 18305742 18305890 -144294040 + MIR SINE MIR 88 260 -2 1813 186 51 14 chrX 18305914 18306264 -144293666 - MLT1A1 LTR MaLR 0 365 3 2314 74 44 0 chrX 18307372 18307668 -144292262 + AluSx SINE Alu 1 309 -3 7032 63 0 44 chrX 18310055 18311112 -144288818 - L1PA10 LINE L1 -2 6166 5121 408 125 0 16 chrX 18311469 18311533 -144288397 + Tigger1 DNA MER2_type 267 329 -2089 12153 96 10 14 chrX 18311575 18313417 -144286513 + Tigger1 DNA MER2_type 584 2418 0 216 196 39 20 chrX 18313947 18313998 -144285932 + MER5A DNA MER1_type 2 53 -136 * 227 193 273 57 chrX 18313974 18314062 -144285868 - MER5A DNA MER1_type -18 171 65 1164 159 144 68 chrX 18314113 18314452 -144285478 - MLT1A1 LTR MaLR 0 365 1 274 180 20 0 chrX 18314652 18314702 -144285228 - L2 LINE L2 0 3313 3263 1767 196 76 23 chrX 18315084 18315518 -144284412 - MSTB2 LTR MaLR 0 457 1 1639 87 0 0 chrX 18315632 18315861 -144284069 + L1MA2 LINE L1 6076 6304 0 25 0 0 0 chrX 18316408 18316433 -144283497 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chrX 18316513 18316534 -144283396 + AT_rich Low_complexity Low_complexity 1 21 0 1783 303 122 34 chrX 18316983 18318083 -144281847 + L2 LINE L2 2001 3208 -105 260 316 42 11 chrX 18318159 18318254 -144281676 + L2 LINE L2 3175 3272 0 1088 45 0 0 chrX 18318651 18318785 -144281145 + AluY SINE Alu 178 311 0 21 36 0 0 chrX 18319190 18319218 -144280712 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 18319245 18319267 -144280663 + AT_rich Low_complexity Low_complexity 1 22 0 773 305 36 4 chrX 18319517 18319766 -144280164 + MIR SINE MIR 3 259 -3 205 360 20 0 chrX 18319787 18319837 -144280093 - L2 LINE L2 -88 3184 3134 2415 117 31 14 chrX 18320260 18320618 -144279312 + THE1B LTR MaLR 1 364 0 245 388 121 0 chrX 18320795 18320911 -144279019 - L2 LINE L2 -15 3257 3128 570 233 107 0 chrX 18320924 18321047 -144278883 + HsTC2a DNA Tc2 9 147 -597 1380 227 63 118 chrX 18321047 18321668 -144278262 - MLT1E LTR MaLR 0 593 7 1953 209 89 13 chrX 18321701 18322243 -144277687 + HsTC2a DNA Tc2 156 738 -4 435 294 14 14 chrX 18323832 18323975 -144275955 - L2 LINE L2 -5 3308 3166 1567 156 10 19 chrX 18324362 18324669 -144275261 + L1PB4 LINE L1 5766 6069 -87 2232 92 14 3 chrX 18325629 18325957 -144273973 + AluSp SINE Alu 1 313 0 1113 190 24 0 chrX 18327692 18327903 -144272027 - MER20 DNA MER1_type 0 219 4 227 260 0 0 chrX 18328479 18328529 -144271401 + GA-rich Low_complexity Low_complexity 4 53 0 258 171 43 14 chrX 18328631 18328701 -144271229 - L1ME4a LINE L1 0 6121 6050 24 0 0 0 chrX 18328980 18329004 -144270926 + AT_rich Low_complexity Low_complexity 1 24 0 640 288 25 88 chrX 18329076 18329476 -144270454 - L2 LINE L2 0 3313 2939 667 297 143 19 chrX 18329507 18329871 -144270059 - L2 LINE L2 -468 2846 2438 24 53 0 0 chrX 18329882 18329920 -144270010 + AT_rich Low_complexity Low_complexity 1 38 0 233 343 140 0 chrX 18330223 18330366 -144269564 - L2 LINE L2 -415 2899 2737 1310 78 0 5 chrX 18330535 18330751 -144269179 + L1M1 LINE L1 5229 5443 -743 1112 156 0 5 chrX 18330774 18330973 -144268957 + L1PBa LINE L1 1 198 -6665 * 10164 138 39 5 chrX 18330969 18332524 -144267406 + L1PBa LINE L1 995 2496 -4366 208 48 48 24 chrX 18332524 18332566 -144267364 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 10164 138 39 5 chrX 18332566 18332877 -144267053 + L1PBa LINE L1 2496 2795 -4067 1698 176 0 45 chrX 18332877 18333189 -144266741 + AluJb SINE Alu 1 298 -14 10164 138 39 5 chrX 18333189 18334829 -144265101 + L1PBa LINE L1 2795 4763 -2099 5796 129 3 1 chrX 18335002 18335952 -144263978 - L1P LINE L1 -1253 4893 3942 1079 183 44 15 chrX 18335984 18336258 -144263672 + Charlie1 DNA MER1_type 2474 2755 -6 1268 195 5 0 chrX 18336375 18336580 -144263350 - AluJo SINE Alu -21 291 86 289 67 0 0 chrX 18336657 18336702 -144263228 - Alu SINE Alu -5 295 251 2298 108 0 0 chrX 18336933 18337229 -144262701 + AluSq SINE Alu 1 296 -17 24 32 0 0 chrX 18337393 18337424 -144262506 + AT_rich Low_complexity Low_complexity 1 31 0 1062 161 0 0 chrX 18337424 18337610 -144262320 - L1PB1 LINE L1 -8 6143 5958 773 4 2 0 chrX 18337952 18338053 -144261877 - L1P1 LINE L1 -400 5755 5653 24 0 0 0 chrX 18338092 18338116 -144261814 + AT_rich Low_complexity Low_complexity 1 24 0 516 242 61 18 chrX 18338162 18338327 -144261603 + MLT1H LTR MaLR 378 549 0 448 239 8 23 chrX 18338785 18338915 -144261015 - MLT1H LTR MaLR -46 503 376 679 283 55 25 chrX 18339209 18339446 -144260484 + MIR SINE MIR 3 246 -16 969 172 0 0 chrX 18340348 18340493 -144259437 - FRAM SINE Alu -22 154 10 339 276 59 40 chrX 18340541 18340693 -144259237 - MLT1J LTR MaLR -331 180 26 1222 186 38 31 chrX 18341479 18341796 -144258134 - MER33 DNA MER1_type -5 319 1 1932 107 3 0 chrX 18341995 18342285 -144257645 + L1MA2 LINE L1 6014 6304 0 559 225 0 31 chrX 18342341 18342470 -144257460 - MIR3 SINE MIR -35 173 49 314 336 64 0 chrX 18342482 18342607 -144257323 - L2 LINE L2 -3 3269 3137 969 258 28 10 chrX 18342854 18343145 -144256785 - LTR16C LTR ERVL 0 491 196 234 0 0 0 chrX 18343489 18343515 -144256415 + (T)n Simple_repeat Simple_repeat 1 26 0 582 187 19 0 chrX 18343867 18343974 -144255956 + MER5A DNA MER1_type 4 112 -77 325 314 246 0 chrX 18344096 18344271 -144255659 + MIR SINE MIR 14 231 -31 899 265 23 15 chrX 18344930 18345194 -144254736 + Tigger8 DNA MER2_type 14 279 -387 246 222 167 0 chrX 18346062 18346134 -144253796 + MIR SINE MIR 69 152 -110 1273 254 88 5 chrX 18346669 18347066 -144252864 + LTR40a LTR ERVL 1 430 -89 353 254 55 0 chrX 18347177 18347287 -144252643 + MIR SINE MIR 144 259 -3 5356 78 19 18 chrX 18347793 18348416 -144251514 + L1MA2 LINE L1 5513 6139 -165 2292 90 7 19 chrX 18348416 18348726 -144251204 + AluSq SINE Alu 1 306 -7 5356 78 19 18 chrX 18348726 18348875 -144251055 + L1MA2 LINE L1 6139 6286 -18 * 6982 62 4 1 chrX 18348873 18350079 -144249851 + L1PA8 LINE L1 4949 6157 -15 1082 211 20 35 chrX 18350220 18350473 -144249457 + MIR SINE MIR 4 260 -2 973 174 0 12 chrX 18350473 18350634 -144249296 - FRAM SINE Alu -17 159 1 261 254 4 0 chrX 18351106 18351185 -144248745 - MLT1J LTR MaLR -324 126 50 2142 219 77 10 chrX 18351452 18351960 -144247970 - MLT1F LTR MaLR 0 542 1 187 385 0 15 chrX 18351960 18352025 -144247905 - MIR SINE MIR -118 90 27 242 191 0 0 chrX 18352184 18352231 -144247699 + (CA)n Simple_repeat Simple_repeat 2 48 0 1073 87 0 47 chrX 18352353 18352525 -144247405 - L1MA1 LINE L1 0 6302 6139 841 209 14 0 chrX 18353318 18353466 -144246464 - FRAM SINE Alu -15 161 12 315 318 0 23 chrX 18353662 18353750 -144246180 - L2 LINE L2 -1 3271 3186 273 233 83 0 chrX 18353748 18353808 -144246122 - MIR SINE MIR -169 93 29 * 236 323 108 12 chrX 18353891 18354058 -144245872 - MIR SINE MIR -7 255 73 305 141 0 78 chrX 18354128 18354192 -144245738 + LTR67 LTR ERVL 499 557 0 289 227 0 34 chrX 18354604 18354692 -144245238 + MER45 DNA AcHobo 1 85 -93 745 197 126 102 chrX 18355659 18356081 -144243849 - L1MD2 LINE L1 -16 6343 5912 4454 160 26 7 chrX 18356153 18357451 -144242479 - L1MB7 LINE L1 -19 6165 4835 251 243 230 20 chrX 18357793 18357945 -144241985 - MIR3 SINE MIR -19 189 6 204 332 95 60 chrX 18358034 18358266 -144241664 + L2 LINE L2 2552 2791 -523 1339 273 52 54 chrX 18358403 18358563 -144241367 - LTR16C LTR ERVL -2 489 330 1553 165 16 3 chrX 18358563 18358878 -144241052 + L1MA4 LINE L1 5977 6295 -5 1339 273 52 54 chrX 18358878 18359197 -144240733 - LTR16C LTR ERVL -161 330 11 21 0 0 0 chrX 18359461 18359482 -144240448 + AT_rich Low_complexity Low_complexity 1 21 0 2098 116 3 30 chrX 18359482 18359785 -144240145 + AluSq SINE Alu 1 295 -18 2441 75 21 3 chrX 18359785 18360117 -144239813 - L1PA10 LINE L1 -6 6162 5825 217 356 88 38 chrX 18360200 18360439 -144239491 - L2 LINE L2 -340 2974 2724 2338 95 3 20 chrX 18362274 18362631 -144237299 + L1PA16 LINE L1 5816 6166 0 23 0 0 0 chrX 18363444 18363467 -144236463 + AT_rich Low_complexity Low_complexity 1 23 0 256 295 57 4 chrX 18363639 18363866 -144236064 - L1 LINE L1 -1732 4414 4176 21 0 0 0 chrX 18363893 18363914 -144236016 + AT_rich Low_complexity Low_complexity 1 21 0 4556 158 40 7 chrX 18364009 18364359 -144235571 - L1MB2 LINE L1 -7 6164 5827 192 77 0 0 chrX 18364359 18364385 -144235545 + (TATG)n Simple_repeat Simple_repeat 3 28 0 4556 158 40 7 chrX 18364385 18364660 -144235270 - L1MB2 LINE L1 -344 5827 5563 2451 90 3 0 chrX 18364660 18364971 -144234959 - AluSp SINE Alu -1 312 1 4556 158 40 7 chrX 18364971 18365706 -144234224 - L1MB2 LINE L1 -608 5563 4758 2948 200 35 6 chrX 18366183 18366864 -144233066 - L1MB2 LINE L1 -1383 4763 4063 1965 151 3 0 chrX 18366987 18367279 -144232651 - AluSx SINE Alu -19 293 1 862 131 80 11 chrX 18367488 18367663 -144232267 + L1MA4 LINE L1 6113 6299 -1 258 305 8 83 chrX 18368088 18368208 -144231722 - MIR SINE MIR -66 142 37 920 183 37 0 chrX 18368212 18368403 -144231527 - L1MD3 LINE L1 -6 7989 7792 255 121 47 54 chrX 18368575 18368724 -144231206 + (TA)n Simple_repeat Simple_repeat 2 149 0 367 166 59 49 chrX 18368736 18369199 -144230731 + (CATATA)n Simple_repeat Simple_repeat 1 467 0 363 158 51 57 chrX 18369244 18369421 -144230509 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 331 112 53 47 chrX 18369467 18369637 -144230293 + (TA)n Simple_repeat Simple_repeat 1 171 0 486 273 117 7 chrX 18370937 18371091 -144228839 + LTR16C LTR ERVL 112 282 -209 591 211 28 0 chrX 18371092 18371201 -144228729 + MER5A DNA MER1_type 1 112 -77 786 211 35 92 chrX 18371215 18371375 -144228555 + LTR16C LTR ERVL 247 388 -103 2109 174 75 33 chrX 18371375 18371857 -144228073 + MLT1D LTR MaLR 4 505 0 786 211 35 92 chrX 18371857 18371956 -144227974 + LTR16C LTR ERVL 388 491 0 265 369 7 13 chrX 18372745 18372894 -144227036 - LTR67 LTR ERVL -311 246 99 2513 130 24 65 chrX 18373116 18373623 -144226307 + LTR19A LTR ERV1 1 486 0 1215 121 39 0 chrX 18375041 18375223 -144224707 + MER5A DNA MER1_type 1 189 0 520 170 0 0 chrX 18375435 18375529 -144224401 + AluSg/x SINE Alu 215 308 -1 1916 191 23 41 chrX 18376671 18377112 -144222818 + MLT1C LTR MaLR 2 434 -33 393 22 0 0 chrX 18377646 18377692 -144222238 + (TG)n Simple_repeat Simple_repeat 1 46 0 501 252 15 0 chrX 18378791 18378926 -144221004 + L1MC/D LINE L1 5574 5710 -2098 324 127 143 0 chrX 18378957 18379020 -144220910 + MER58 DNA MER1_type 181 252 -89 312 382 72 7 chrX 18379284 18379436 -144220494 - L2 LINE L2 -4 3268 3107 825 270 154 19 chrX 18380149 18380578 -144219352 + LTR33 LTR ERVL 5 491 -30 36493 36 2 1 chrX 18380641 18386784 -144213146 - L1PA3 LINE L1 -2 6153 1 2162 106 7 0 chrX 18386808 18387101 -144212829 + AluSx SINE Alu 5 299 -13 359 291 15 82 chrX 18387274 18387470 -144212460 - L3 LINE CR1 -272 1305 1123 398 280 16 48 chrX 18387749 18387874 -144212056 - L3 LINE CR1 -614 963 843 284 306 31 62 chrX 18387898 18388058 -144211872 - L3 LINE CR1 -635 942 788 5063 122 11 6 chrX 18388125 18389438 -144210492 + L1MA2 LINE L1 4717 6034 -270 1966 166 23 6 chrX 18389442 18389873 -144210057 + L1MA2 LINE L1 5215 5652 -652 2077 106 41 12 chrX 18390008 18390348 -144209582 + L1MA2 LINE L1 5955 6304 0 577 283 85 46 chrX 18390382 18390792 -144209138 - MLT1J LTR MaLR -84 427 2 217 318 63 0 chrX 18390837 18390900 -144209030 - L2 LINE L2 0 3272 3206 1766 91 0 0 chrX 18390951 18391171 -144208759 + AluSg/x SINE Alu 83 302 -10 815 352 118 12 chrX 18391171 18391764 -144208166 - L3 LINE CR1 -802 775 120 393 22 0 0 chrX 18392414 18392460 -144207470 + (TG)n Simple_repeat Simple_repeat 2 47 0 1038 169 0 0 chrX 18393441 18393619 -144206311 - MER58A DNA MER1_type 0 224 47 1107 214 0 5 chrX 18394417 18394637 -144205293 + MER58A DNA MER1_type 1 219 -5 1051 302 144 53 chrX 18394661 18395408 -144204522 + L2 LINE L2 2198 3007 -265 1615 140 18 43 chrX 18395793 18396122 -144203808 - MER33 DNA MER1_type 0 324 4 429 263 92 59 chrX 18396143 18396488 -144203442 - L1ME3 LINE L1 -211 5951 5595 928 274 98 17 chrX 18396640 18397224 -144202706 - L1MC3 LINE L1 -344 5818 5292 1784 122 7 73 chrX 18397235 18397561 -144202369 + AluSx SINE Alu 1 306 0 819 317 50 21 chrX 18397579 18398204 -144201726 - L1MC3 LINE L1 -873 5273 4631 843 318 50 16 chrX 18398204 18398411 -144201519 - L2 LINE L2 -23 3290 3092 210 37 0 0 chrX 18398411 18398438 -144201492 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 843 318 50 16 chrX 18398438 18398700 -144201230 - L2 LINE L2 -221 3092 2709 210 339 32 0 chrX 18399294 18399356 -144200574 - L3 LINE CR1 -19 1558 1495 315 85 0 0 chrX 18399411 18399458 -144200472 + (TG)n Simple_repeat Simple_repeat 1 47 0 482 235 76 8 chrX 18399513 18399632 -144200298 + L2 LINE L2 3142 3268 -4 1589 185 40 40 chrX 18399683 18399887 -144200043 - MLT1A2 LTR MaLR -1 373 167 279 0 0 0 chrX 18399887 18399918 -144200012 + (TG)n Simple_repeat Simple_repeat 1 31 0 1589 185 40 40 chrX 18399918 18400086 -144199844 - MLT1A2 LTR MaLR -206 168 1 2343 78 7 3 chrX 18400160 18400456 -144199474 + AluSc SINE Alu 1 297 -12 6083 154 62 40 chrX 18400465 18401740 -144198190 + L1MCa LINE L1 23 1325 -5101 11810 207 78 42 chrX 18401752 18404598 -144195332 + L1PA16 LINE L1 1735 4476 -2393 5027 59 2 0 chrX 18404598 18405226 -144194704 - L1PA6 LINE L1 0 6154 5526 11810 207 78 42 chrX 18405226 18406009 -144193921 + L1PA16 LINE L1 4476 5229 -1640 2304 110 0 0 chrX 18406009 18406308 -144193622 - AluSp SINE Alu -14 299 1 11810 207 78 42 chrX 18406308 18406363 -144193567 + L1PA16 LINE L1 5229 5281 -1588 3522 112 0 15 chrX 18406363 18406882 -144193048 - MER9 LTR ERVK 0 511 1 11810 207 78 42 chrX 18406882 18407453 -144192477 + L1PA16 LINE L1 5281 6173 -696 387 59 0 0 chrX 18407453 18407504 -144192426 - MADE1 DNA Mariner 0 80 30 4579 122 7 3 chrX 18407523 18408218 -144191712 + L1PA16 LINE L1 6172 6869 0 1884 243 4 2 chrX 18408220 18408723 -144191207 + L1MCa LINE L1 2522 3025 -3401 317 348 52 0 chrX 18408742 18408877 -144191053 - MIR SINE MIR -10 252 111 227 261 0 0 chrX 18408891 18408937 -144190993 + MIR SINE MIR 217 262 0 213 39 0 0 chrX 18409093 18409119 -144190811 + (TG)n Simple_repeat Simple_repeat 1 26 0 6700 14 0 2 chrX 18409470 18410273 -144189657 - L1PA2 LINE L1 0 6155 5355 6365 21 0 1 chrX 18410278 18411056 -144188874 + L1P LINE L1 3959 4735 -1411 253 320 148 10 chrX 18411326 18411529 -144188401 - L3 LINE CR1 -269 1308 1078 203 190 17 0 chrX 18411841 18411899 -144188031 + CT-rich Low_complexity Low_complexity 2 60 0 1049 214 146 10 chrX 18412086 18412380 -144187550 + LTR16C LTR ERVL 158 491 0 21 71 0 0 chrX 18412506 18412548 -144187382 + AT_rich Low_complexity Low_complexity 1 42 0 2409 116 78 20 chrX 18413113 18413510 -144186420 + MSTB LTR MaLR 3 422 -4 2182 122 0 32 chrX 18413584 18413896 -144186034 + AluSx SINE Alu 1 302 -10 2042 124 0 0 chrX 18415188 18415463 -144184467 + AluSx SINE Alu 1 275 -37 207 0 0 0 chrX 18415468 18415491 -144184439 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1709 249 12 10 chrX 18415783 18416184 -144183746 - LTR40a LTR ERVL -117 402 1 1231 265 34 48 chrX 18416349 18416787 -144183143 - LTR16A LTR ERVL -6 444 13 358 266 17 23 chrX 18418363 18418381 -144181549 - L1MA10 LINE L1 -1 6333 6316 1326 203 27 3 chrX 18418381 18418676 -144181254 - L1ME2 LINE L1 -10 6154 5853 339 319 43 9 chrX 18419293 18419409 -144180521 + MIR3 SINE MIR 65 184 -24 7745 20 4 0 chrX 18419994 18421213 -144178717 - L1PA3 LINE L1 -2 6153 4933 252 242 0 0 chrX 18421473 18421535 -144178395 + L1MC/D LINE L1 5834 5895 -1913 188 288 76 30 chrX 18421666 18421732 -144178198 - L2 LINE L2 -344 2970 2902 432 0 0 0 chrX 18422113 18422161 -144177769 + (CA)n Simple_repeat Simple_repeat 2 49 0 653 292 308 8 chrX 18422697 18423084 -144176846 - L2 LINE L2 -1 3312 2810 250 242 0 0 chrX 18423105 18423167 -144176763 + L1MC/D LINE L1 5834 5895 -1913 321 295 67 76 chrX 18423379 18423694 -144176236 + MLT1J LTR MaLR 108 419 -92 2901 9 0 0 chrX 18423916 18424234 -144175696 - AluYb8 SINE Alu 0 318 1 402 314 158 43 chrX 18424284 18424587 -144175343 + L2 LINE L2 2925 3262 -10 1826 217 173 8 chrX 18424863 18425394 -144174536 + MLT2F LTR ERVL 1 619 -44 249 33 0 0 chrX 18425409 18425439 -144174491 + (GA)n Simple_repeat Simple_repeat 1 30 0 249 224 47 0 chrX 18425440 18425525 -144174405 + (TA)n Simple_repeat Simple_repeat 2 90 0 3969 176 52 32 chrX 18426279 18426355 -144173575 + L1P5 LINE L1 4325 4398 -1753 207 0 0 0 chrX 18426355 18426378 -144173552 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3969 176 52 32 chrX 18426378 18427545 -144172385 + L1P5 LINE L1 4398 5569 -582 1934 132 9 11 chrX 18627547 18627895 -143972035 + L1MA2 LINE L1 5958 6304 0 336 180 171 72 chrX 18627933 18628044 -143971886 + FLAM_C SINE Alu 2 123 -10 240 222 16 16 chrX 18628051 18628114 -143971816 - MIR SINE MIR 0 262 200 914 156 49 126 chrX 18628193 18628402 -143971528 - MSTB1 LTR MaLR -187 245 58 2467 77 7 0 chrX 18628402 18628712 -143971218 - AluSp SINE Alu -1 312 1 914 156 49 126 chrX 18628712 18628765 -143971165 - MSTB1 LTR MaLR -374 58 3 1012 263 51 0 chrX 18628784 18629039 -143970891 + MER119 DNA MER1_type 5 272 -311 244 292 94 0 chrX 18629815 18629911 -143970019 - MIR3 SINE MIR -3 205 101 471 185 0 0 chrX 18630773 18630865 -143969065 + GA-rich Low_complexity Low_complexity 3 94 0 24 53 0 0 chrX 18631372 18631410 -143968520 + AT_rich Low_complexity Low_complexity 1 38 0 216 111 0 0 chrX 18632318 18632354 -143967576 + (TG)n Simple_repeat Simple_repeat 2 37 0 381 312 131 79 chrX 18632785 18633331 -143966599 + L2 LINE L2 2651 3231 -41 478 270 145 52 chrX 18633331 18633675 -143966255 - MLT1J2 LTR MaLR -4 446 71 469 222 142 40 chrX 18634819 18635044 -143964886 - MER112 DNA MER1_type 0 260 13 2259 98 3 16 chrX 18635491 18635798 -143964132 + AluSg SINE Alu 1 303 -7 317 322 47 23 chrX 18635876 18636047 -143963883 + L1M4 LINE L1 2111 2285 -3861 2272 72 7 0 chrX 18636047 18636338 -143963592 + AluY SINE Alu 1 293 -18 1831 175 70 34 chrX 18636764 18637210 -143962720 - MLT1C LTR MaLR 0 467 6 21 0 0 0 chrX 18637347 18637368 -143962562 + AT_rich Low_complexity Low_complexity 1 21 0 2389 100 49 9 chrX 18637462 18637812 -143962118 - THE1B LTR MaLR 0 364 1 21 36 0 0 chrX 18637884 18637912 -143962018 + AT_rich Low_complexity Low_complexity 1 28 0 2613 43 0 0 chrX 18638338 18638641 -143961289 - AluY SINE Alu -8 303 1 912 152 0 0 chrX 18638778 18638910 -143961020 + FLAM_C SINE Alu 1 132 -11 201 196 0 0 chrX 18639131 18639177 -143960753 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 246 359 33 0 chrX 18639350 18639442 -143960488 + LTR33A LTR ERVL 68 162 -361 260 109 0 22 chrX 18639462 18639508 -143960422 + (CAG)n Simple_repeat Simple_repeat 3 47 0 256 184 92 23 chrX 18639774 18639861 -143960069 + LTR33A LTR ERVL 431 523 0 197 420 65 0 chrX 18640089 18640227 -143959703 + MIR3 SINE MIR 30 176 -32 316 281 46 46 chrX 18640257 18640387 -143959543 + MIR SINE MIR 38 166 -76 22 56 0 0 chrX 18640431 18640467 -143959463 + AT_rich Low_complexity Low_complexity 1 36 0 1066 146 87 36 chrX 18640503 18640722 -143959208 + MER6 DNA MER2_type 2 231 -634 198 0 0 0 chrX 18640722 18640744 -143959186 + (GA)n Simple_repeat Simple_repeat 1 22 0 866 188 0 6 chrX 18640746 18640927 -143959003 + GA-rich Low_complexity Low_complexity 1 180 0 533 196 20 0 chrX 18640955 18641057 -143958873 + MER6 DNA MER2_type 241 344 -261 595 227 0 0 chrX 18641066 18641198 -143958732 + L1 LINE L1 4052 4183 -1963 4982 169 17 4 chrX 18641348 18642934 -143956996 + L1PA14 LINE L1 4549 6159 -2 2230 155 3 5 chrX 18642934 18643318 -143956612 + L1PB4 LINE L1 5769 6154 -2 1365 102 41 20 chrX 18643318 18643564 -143956366 + MER6 DNA MER2_type 614 864 -1 438 261 18 0 chrX 18643677 18643788 -143956142 + MER81 DNA DNA 1 113 -1 4059 121 3 28 chrX 18644055 18644701 -143955229 + L1PB3 LINE L1 5525 6154 0 207 0 0 0 chrX 18644706 18644729 -143955201 + (TAA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chrX 18645323 18645345 -143954585 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 236 365 17 26 chrX 18645773 18645888 -143954042 - MIR3 SINE MIR -92 116 3 252 86 0 0 chrX 18646539 18646574 -143953356 + (TG)n Simple_repeat Simple_repeat 1 35 0 494 265 27 92 chrX 18646602 18646854 -143953076 - MIR SINE MIR -21 241 4 1768 207 54 23 chrX 18647169 18647650 -143952280 + L1ME1 LINE L1 5685 6334 0 386 335 104 16 chrX 18649095 18649402 -143950528 + L1ME4a LINE L1 5716 6049 -72 4837 147 17 11 chrX 18649963 18650835 -143949095 - L1MB7 LINE L1 -24 6160 5284 750 247 81 0 chrX 18651427 18651613 -143948317 - MIR SINE MIR -44 218 18 180 157 0 118 chrX 18651951 18652002 -143947928 + L2 LINE L2 3228 3272 0 3222 175 28 0 chrX 18652506 18653088 -143946842 - MER90 LTR ERV1 -11 603 6 523 185 0 0 chrX 18653191 18653283 -143946647 - FLAM SINE Alu -11 132 41 188 83 0 28 chrX 18653289 18653325 -143946605 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4401 30 0 0 chrX 18653325 18653860 -143946070 - L1PA3 LINE L1 -24 6131 5597 2323 14 0 0 chrX 18653857 18654136 -143945794 + L1PA3 LINE L1 5328 5606 -549 * 11706 35 7 0 chrX 18654112 18655627 -143944303 + L1P LINE L1 2487 4012 -2134 30 59 0 0 chrX 18656036 18656087 -143943843 + AT_rich Low_complexity Low_complexity 1 51 0 627 296 20 20 chrX 18656530 18656834 -143943096 - L1MC/D LINE L1 -1995 5813 5510 230 296 185 22 chrX 18657162 18657297 -143942633 + L2 LINE L2 2601 2757 -557 281 374 61 5 chrX 18657321 18657519 -143942411 + L2 LINE L2 2904 3112 -160 238 253 84 0 chrX 18657547 18657642 -143942288 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 366 91 0 0 chrX 18658294 18658349 -143941581 - L1MA9 LINE L1 0 6312 6258 426 20 0 0 chrX 18658350 18658401 -143941529 + (TG)n Simple_repeat Simple_repeat 1 51 0 3319 158 5 3 chrX 18658401 18658978 -143940952 - L1MA9 LINE L1 -161 6151 5574 495 268 85 32 chrX 18659094 18659340 -143940590 - MIR SINE MIR 0 262 4 522 287 112 60 chrX 18659591 18659859 -143940071 + MLT1I LTR MaLR 128 409 0 1982 133 75 26 chrX 18660689 18661036 -143938894 - THE1B LTR MaLR 0 364 1 684 277 148 26 chrX 18661974 18662064 -143937866 + MLT1L LTR MaLR 1 79 -536 1239 202 67 52 chrX 18662064 18662525 -143937405 + LTR37B LTR ERV1 1 468 0 684 277 148 26 chrX 18662525 18662900 -143937030 + MLT1L LTR MaLR 79 523 -92 13055 24 0 0 chrX 18662925 18665231 -143934699 - L1PA3 LINE L1 0 6155 3857 6978 31 0 0 chrX 18665232 18666122 -143933808 + L1PA3 LINE L1 2949 3838 -2308 2681 70 8 6 chrX 18666477 18666835 -143933095 + L1PB2 LINE L1 5775 6133 -18 25 0 0 0 chrX 18666838 18666863 -143933067 + AT_rich Low_complexity Low_complexity 1 25 0 208 319 22 55 chrX 18667290 18667381 -143932549 - MIR3 SINE MIR -14 194 107 6279 97 6 0 chrX 18667498 18669274 -143930656 - L1PA10 LINE L1 -2 6166 4385 485 183 189 29 chrX 18670006 18670157 -143929773 + MER5A DNA MER1_type 4 182 -7 212 333 14 14 chrX 18670158 18670230 -143929700 - MIR3 SINE MIR -42 166 95 259 287 129 0 chrX 18670748 18670849 -143929081 - MER102a DNA MER1_type -7 323 210 420 200 164 50 chrX 18671011 18671151 -143928779 - L2 LINE L2 0 3313 3158 1257 277 66 29 chrX 18672474 18673182 -143926748 - L2 LINE L2 0 3313 2580 245 261 31 0 chrX 18673260 18673325 -143926605 - MIR SINE MIR -72 190 124 268 359 32 7 chrX 18673362 18673503 -143926427 - MIR SINE MIR -45 163 15 2210 158 65 10 chrX 18673751 18674151 -143925779 + MSTB LTR MaLR 3 424 -2 23 0 0 0 chrX 18674162 18674185 -143925745 + AT_rich Low_complexity Low_complexity 1 23 0 1196 224 93 93 chrX 18674834 18675611 -143924319 + LTR41 LTR ERVL 1 795 0 189 74 0 0 chrX 18675780 18675807 -143924123 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 268 212 30 0 chrX 18675808 18675874 -143924056 + (CAGAGA)n Simple_repeat Simple_repeat 6 73 0 271 213 11 161 chrX 18675983 18676157 -143923773 - L2 LINE L2 -70 3243 3096 1399 180 86 53 chrX 18676160 18676521 -143923409 - MLT1D LTR MaLR -9 496 124 534 272 206 22 chrX 18676591 18676937 -143922993 - L2 LINE L2 -254 3059 2654 263 350 0 0 chrX 18676940 18677020 -143922910 + MER117 DNA MER1_type 40 119 -78 249 258 3 0 chrX 18677742 18677814 -143922116 - L2 LINE L2 -4 3309 3237 321 184 174 0 chrX 18677837 18677935 -143921995 - L2 LINE L2 -778 2536 2422 293 319 60 17 chrX 18678408 18678557 -143921373 - MIR SINE MIR -66 142 36 564 187 47 0 chrX 18678771 18678878 -143921052 + L2 LINE L2 3197 3308 -5 180 111 0 0 chrX 18679478 18679505 -143920425 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 643 260 41 0 chrX 18679505 18679701 -143920229 - L1ME3A LINE L1 -4 6166 5963 314 283 97 9 chrX 18680282 18680395 -143919535 + L1MC4 LINE L1 6604 6726 -1316 542 238 199 0 chrX 18681919 18682070 -143917860 - MER5A DNA MER1_type 0 189 9 470 274 27 0 chrX 18682559 18682705 -143917225 + Charlie8 DNA MER1_type 419 568 -1849 1053 168 22 58 chrX 18682710 18682936 -143916994 - MER20 DNA MER1_type -1 218 1 1124 267 4 0 chrX 18682945 18683192 -143916738 - MIR SINE MIR 0 262 15 359 257 18 0 chrX 18683198 18683307 -143916623 + Charlie8 DNA MER1_type 579 689 -1728 2108 106 3 0 chrX 18683350 18683669 -143916261 - AluSq SINE Alu 0 320 1 1181 283 97 49 chrX 18684985 18685801 -143914129 + Charlie8 DNA MER1_type 1529 2383 -34 1179 283 91 17 chrX 18686957 18687430 -143912500 - L2 LINE L2 -2 3311 2804 200 35 35 0 chrX 18687440 18687469 -143912461 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1564 231 116 24 chrX 18687473 18687797 -143912133 + MLT1H1 LTR MaLR 16 402 -153 2179 122 7 3 chrX 18687797 18688093 -143911837 + AluSx SINE Alu 1 297 -15 1564 231 116 24 chrX 18688093 18688261 -143911669 + MLT1H1 LTR MaLR 402 553 -2 280 136 15 15 chrX 18688278 18688344 -143911586 + L1PB1 LINE L1 6086 6151 0 249 68 23 0 chrX 18688362 18688406 -143911524 + L1MB4 LINE L1 6126 6170 -10 866 288 144 0 chrX 18688413 18688774 -143911156 - L2 LINE L2 -1198 2116 1704 275 359 28 0 chrX 18689348 18689565 -143910365 + L1ME LINE L1 4106 4328 -1818 351 0 0 0 chrX 18689668 18689707 -143910223 + (TG)n Simple_repeat Simple_repeat 2 40 0 411 327 75 52 chrX 18689803 18690243 -143909687 + L1ME LINE L1 4585 5034 -1112 373 156 44 0 chrX 18690321 18690411 -143909519 - L1MB3 LINE L1 -3 6180 6087 377 204 184 20 chrX 18690477 18690624 -143909306 + L1ME LINE L1 5257 5427 -2381 1047 236 116 75 chrX 18690647 18691155 -143908775 + MLT1H LTR MaLR 21 549 0 406 298 57 27 chrX 18691238 18691500 -143908430 + L1ME LINE L1 5536 5805 -316 2248 112 0 7 chrX 18691826 18692131 -143907799 + AluSx SINE Alu 5 307 -5 326 218 0 0 chrX 18692144 18692199 -143907731 - L2 LINE L2 -12 3260 3206 216 191 0 0 chrX 18692310 18692357 -143907573 + A-rich Low_complexity Low_complexity 1 47 0 1713 176 48 27 chrX 18693179 18693554 -143906376 + MLT1B LTR MaLR 1 383 -7 261 297 22 0 chrX 18693781 18693872 -143906058 - HERVL LTR ERVL -3840 1814 1722 390 316 23 60 chrX 18694131 18694397 -143905533 - HERVL LTR ERVL -4321 1443 1188 204 226 0 19 chrX 18694499 18694552 -143905378 + (TTG)n Simple_repeat Simple_repeat 2 53 0 352 234 23 0 chrX 18694712 18694840 -143905090 + L1M4 LINE L1 3368 3498 -2648 2190 157 68 19 chrX 18694851 18695334 -143904596 + L1MB8 LINE L1 5672 6178 0 34 42 0 0 chrX 18695653 18695701 -143904229 + AT_rich Low_complexity Low_complexity 1 48 0 339 298 90 27 chrX 18695919 18696329 -143903601 - L1MC4a LINE L1 -1959 5849 5414 321 318 48 0 chrX 18696370 18696496 -143903434 - L1MC4a LINE L1 -804 5342 5211 21 36 0 0 chrX 18696547 18696575 -143903355 + AT_rich Low_complexity Low_complexity 1 28 0 2026 121 31 3 chrX 18696582 18696871 -143903059 - AluJo SINE Alu -15 297 1 1685 184 19 19 chrX 18697104 18697414 -143902516 - AluJo SINE Alu -2 310 1 845 271 25 58 chrX 18697835 18698151 -143901779 + L2 LINE L2 2748 3045 -268 1510 191 83 14 chrX 18698151 18698512 -143901418 + MLT1B LTR MaLR 1 386 -4 845 271 25 58 chrX 18698512 18698630 -143901300 + L2 LINE L2 3045 3165 -148 3539 125 24 3 chrX 18698640 18699232 -143900698 - L1MA3 LINE L1 0 6305 5702 1371 101 0 5 chrX 18699232 18699431 -143900499 + L1MA3 LINE L1 5506 5703 -601 640 228 6 43 chrX 18699434 18699596 -143900334 + L2 LINE L2 3158 3313 0 480 309 38 58 chrX 18699849 18700192 -143899738 - LTR16C LTR ERVL -52 439 104 546 266 76 22 chrX 18701270 18701454 -143898476 - MIR SINE MIR -16 246 53 1388 224 151 18 chrX 18701495 18701999 -143897931 + MLT1G LTR MaLR 20 590 0 238 135 0 0 chrX 18702324 18702361 -143897569 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 280 308 34 87 chrX 18703240 18703506 -143896424 + MLT1J LTR MaLR 113 364 -147 564 219 148 6 chrX 18703773 18703932 -143895998 - MER5A DNA MER1_type 0 189 5 186 43 0 0 chrX 18703992 18704015 -143895915 + (CA)n Simple_repeat Simple_repeat 2 24 0 228 35 0 0 chrX 18704015 18704044 -143895886 + (GA)n Simple_repeat Simple_repeat 1 29 0 350 253 14 12 chrX 18704045 18704147 -143895783 + MER5A DNA MER1_type 67 162 -16 567 238 106 5 chrX 18706957 18707123 -143892807 + MER5A DNA MER1_type 5 189 0 4268 121 36 8 chrX 18707729 18708454 -143891476 - L1MA8 LINE L1 -5 6286 5542 193 300 0 17 chrX 18710269 18710329 -143889601 - L2 LINE L2 0 3272 3214 1965 134 48 31 chrX 18710450 18710808 -143889122 - THE1B LTR MaLR 0 364 1 873 303 40 18 chrX 18710972 18711379 -143888551 + LTR16C LTR ERVL 72 457 0 396 206 128 0 chrX 18711723 18711825 -143888105 - MER63 DNA MER1_type -94 742 2 26 30 0 0 chrX 18713944 18713977 -143885953 + AT_rich Low_complexity Low_complexity 1 33 0 270 311 134 18 chrX 18714235 18714399 -143885531 + MIR SINE MIR 75 257 -5 265 272 132 29 chrX 18714396 18714532 -143885398 + L2 LINE L2 2725 2874 -440 * 621 312 56 26 chrX 18714573 18714836 -143885094 + LTR16C LTR ERVL 3 273 -218 1826 240 59 12 chrX 18714836 18715327 -143884603 - LTR40a LTR ERVL 0 519 6 628 203 28 7 chrX 18715353 18715496 -143884434 + LTR16C LTR ERVL 296 441 -50 908 193 45 6 chrX 18716209 18716385 -143883545 + MER5A DNA MER1_type 7 189 0 563 241 9 0 chrX 18717271 18717383 -143882547 + MER81 DNA DNA 1 113 -1 343 263 50 56 chrX 18717732 18717911 -143882019 + MER5B DNA MER1_type 1 178 0 853 190 18 0 chrX 18717925 18718088 -143881842 - MER5B DNA MER1_type -6 172 7 320 298 152 6 chrX 18718107 18718265 -143881665 + MER5A DNA MER1_type 9 189 0 450 244 191 8 chrX 18719633 18719764 -143880166 + MER5A DNA MER1_type 35 189 0 462 310 13 19 chrX 18719772 18719927 -143880003 + MER5B DNA MER1_type 1 154 -24 2111 113 7 39 chrX 18720069 18720379 -143879551 + AluSx SINE Alu 1 300 -12 248 264 56 0 chrX 18720488 18720560 -143879370 + MIR SINE MIR 66 141 -67 1377 147 31 0 chrX 18720621 18720845 -143879085 + LTR32 LTR ERVL 14 244 -227 715 178 68 0 chrX 18720878 18721024 -143878906 + LTR32 LTR ERVL 316 471 0 320 225 0 50 chrX 18721037 18721117 -143878813 - MER81 DNA DNA -38 76 1 8546 176 73 20 chrX 18721407 18721472 -143878458 + L1MA2 LINE L1 13 73 -7492 2485 85 0 0 chrX 18721472 18721777 -143878153 - AluSc SINE Alu -4 305 1 8546 176 73 20 chrX 18721777 18723472 -143876458 + L1MA2 LINE L1 73 1865 -5700 * 11119 150 21 12 chrX 18723462 18723994 -143875936 + L1MA2 LINE L1 4446 4972 -2751 2266 92 0 3 chrX 18723994 18724287 -143875643 - AluY SINE Alu -19 292 1 11119 150 21 12 chrX 18724287 18726139 -143873791 + L1MA2 LINE L1 4972 6867 -856 2230 105 40 35 chrX 18726139 18726512 -143873418 + THE1C LTR MaLR 1 375 0 11119 150 21 12 chrX 18726512 18727360 -143872570 + L1MA2 LINE L1 6867 7706 -17 3220 71 0 7 chrX 18727361 18727796 -143872134 - MLT2A1 LTR ERVL -10 434 3 252 0 0 0 chrX 18728068 18728096 -143871834 + (TGG)n Simple_repeat Simple_repeat 2 29 0 571 283 75 97 chrX 18728328 18729041 -143870889 + L2 LINE L2 2602 3312 -1 343 22 43 0 chrX 18729099 18729145 -143870785 + LTR37A LTR ERV1 1 48 -378 1267 173 58 4 chrX 18729146 18729406 -143870524 - MER58B DNA MER1_type -2 339 66 2695 176 76 34 chrX 18729414 18729832 -143870098 - L1ME1 LINE L1 -141 6025 5626 2220 92 3 0 chrX 18729832 18730156 -143869774 - AluSx SINE Alu 0 325 1 2695 176 76 34 chrX 18730156 18730584 -143869346 - L1ME1 LINE L1 -540 5626 5140 1371 202 102 11 chrX 18730581 18730962 -143868968 + L1ME1 LINE L1 4734 5149 -997 * 350 198 50 20 chrX 18730955 18731056 -143868874 - L1MC/D LINE L1 -2073 5735 5632 * 683 200 113 6 chrX 18732032 18732152 -143867778 - MER5B DNA MER1_type -1 177 34 10527 28 0 0 chrX 18732152 18734159 -143865771 - L1PA4 LINE L1 0 6155 4139 683 200 113 6 chrX 18734159 18734198 -143865732 - MER5B DNA MER1_type -144 34 1 1425 206 17 78 chrX 18734221 18734634 -143865296 + MLT1B LTR MaLR 1 388 -2 23 0 0 0 chrX 18735236 18735259 -143864671 + AT_rich Low_complexity Low_complexity 1 23 0 2290 83 0 3 chrX 18735259 18735547 -143864383 - AluSx SINE Alu -21 291 5 186 167 0 0 chrX 18735671 18735707 -143864223 + (CA)n Simple_repeat Simple_repeat 2 37 0 1604 297 49 19 chrX 18735962 18737060 -143862870 - HERV16 LTR ERVL -2904 2092 982 2583 206 74 25 chrX 18737070 18737663 -143862267 + MLT1E1 LTR MaLR 5 626 -28 2999 38 8 0 chrX 18737666 18738033 -143861897 + L1PA3 LINE L1 5783 6152 -3 45 0 0 0 chrX 18738033 18738078 -143861852 + AT_rich Low_complexity Low_complexity 1 45 0 629 280 71 52 chrX 18738085 18738449 -143861481 - HERV16 LTR ERVL -4015 981 611 1416 246 47 40 chrX 18739001 18739452 -143860478 - LTR16A1 LTR ERVL 0 457 4 898 284 135 42 chrX 18739501 18739931 -143859999 + L2 LINE L2 2804 3273 -40 180 111 0 0 chrX 18739958 18739985 -143859945 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1006 210 11 0 chrX 18740038 18740224 -143859706 - MER5A DNA MER1_type 0 189 2 347 219 203 21 chrX 18740492 18740729 -143859201 + L1ME4a LINE L1 5838 6117 -4 22 80 0 0 chrX 18741467 18741517 -143858413 + AT_rich Low_complexity Low_complexity 1 50 0 2474 65 16 3 chrX 18741614 18741921 -143858009 + AluY SINE Alu 1 311 0 9664 162 14 7 chrX 18742027 18742051 -143857879 - L1M1 LINE L1 -743 6822 6800 2169 126 32 24 chrX 18742051 18742423 -143857507 + THE1C LTR MaLR 1 375 0 10581 109 15 28 chrX 18742423 18744024 -143855906 + THE1C-int LTR MaLR 1 1580 0 2260 139 16 16 chrX 18744024 18744399 -143855531 + THE1C LTR MaLR 1 375 0 9664 162 14 7 chrX 18744399 18746442 -143853488 - L1M1 LINE L1 -764 6801 4843 3833 159 6 6 chrX 18746436 18747104 -143852826 - L1M1 LINE L1 -6886 679 12 * 1788 262 73 10 chrX 18747369 18747995 -143851935 + L1ME3 LINE L1 5489 6154 -8 183 314 121 0 chrX 18748106 18748230 -143851700 + L2 LINE L2 3163 3301 -12 409 112 0 61 chrX 18748597 18748695 -143851235 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 516 77 0 0 chrX 18749376 18749454 -143850476 + (CA)n Simple_repeat Simple_repeat 2 79 0 1050 208 27 23 chrX 18750876 18751097 -143848833 - MER58A DNA MER1_type 0 224 3 494 318 80 19 chrX 18751104 18751368 -143848562 - L1MEd LINE L1 -4969 1150 871 252 269 28 9 chrX 18752366 18752474 -143847456 + L1 LINE L1 2248 2357 -3789 264 313 94 28 chrX 18752509 18753177 -143846753 + L1 LINE L1 2423 3134 -3012 2168 151 35 55 chrX 18753190 18753767 -143846163 - MLT2A2 LTR ERVL 0 554 1 1197 107 36 5 chrX 18753860 18754056 -143845874 - L1MA9 LINE L1 -278 6034 5833 906 123 0 0 chrX 18754049 18754195 -143845735 + L1MA9 LINE L1 6018 6163 -149 * 303 271 86 41 chrX 18754176 18754397 -143845533 - L1MC/D LINE L1 -2264 5544 5314 * 758 134 0 0 chrX 18754558 18754692 -143845238 + L1MA9 LINE L1 6169 6302 -10 270 241 62 47 chrX 18754787 18754966 -143844964 + L1 LINE L1 3547 3737 -2409 * 484 285 99 29 chrX 18754965 18755452 -143844478 + L1ME3A LINE L1 3875 4395 -1751 234 0 0 0 chrX 18755478 18755504 -143844426 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1061 210 37 14 chrX 18755549 18755763 -143844167 + MER58A DNA MER1_type 3 221 -3 301 239 0 0 chrX 18755902 18755973 -143843957 + MER58 DNA MER1_type 211 281 -60 1824 56 0 4 chrX 18756000 18756234 -143843696 + L1PA8 LINE L1 5940 6172 0 506 307 64 37 chrX 18756287 18757466 -143842464 + L1ME3A LINE L1 4616 5884 -286 499 215 44 7 chrX 18758377 18758512 -143841418 - L1ME3A LINE L1 -4 6560 6421 1801 224 51 62 chrX 18758513 18758765 -143841165 - L1ME3A LINE L1 -249 6315 6062 1616 123 76 47 chrX 18758765 18759107 -143840823 - L1MA7 LINE L1 -2 6289 5938 1801 224 51 62 chrX 18759107 18759502 -143840428 - L1ME3A LINE L1 -502 6062 5675 234 218 0 36 chrX 18759505 18759560 -143840370 + CT-rich Low_complexity Low_complexity 4 56 0 559 259 118 7 chrX 18759564 18759853 -143840077 - L1ME3A LINE L1 -875 5665 5345 301 267 0 0 chrX 18759855 18759915 -143840015 + polypyrimidine Low_complexity Low_complexity 1 60 0 755 83 0 68 chrX 18759916 18760108 -143839822 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 501 168 13 45 chrX 18760134 18760289 -143839641 + CT-rich Low_complexity Low_complexity 1 150 0 2373 245 74 28 chrX 18760300 18761462 -143838468 - L1ME3A LINE L1 -1210 5330 4116 1197 217 87 32 chrX 18761516 18761862 -143838068 + MLT1A1 LTR MaLR 1 365 0 4451 197 10 75 chrX 18761862 18762975 -143836955 + MLT1A1-int LTR MaLR 1 1040 -695 340 272 56 6 chrX 18763011 18763191 -143836739 - L1ME3A LINE L1 -2768 3772 3584 320 403 28 39 chrX 18763377 18763660 -143836270 - L1ME3A LINE L1 -6242 298 19 389 292 47 41 chrX 18763715 18763886 -143836044 - L1M4b LINE L1 -5329 1530 1359 247 302 0 0 chrX 18764442 18764505 -143835425 + L2 LINE L2 2686 2748 -566 252 389 47 27 chrX 18764751 18764900 -143835030 + L2 LINE L2 3116 3267 -5 2516 16 3 20 chrX 18766011 18766316 -143833614 + L1PA4 LINE L1 5856 6155 0 2208 165 78 41 chrX 18766778 18767262 -143832668 - MLT1D LTR MaLR -1 504 3 313 288 98 20 chrX 18767306 18767459 -143832471 + MIR SINE MIR 93 257 -5 441 284 60 50 chrX 18768441 18768659 -143831271 - L2 LINE L2 -2 3311 3092 * 1641 292 165 19 chrX 18768640 18769665 -143830265 - L2 LINE L2 -317 2955 1781 776 261 39 19 chrX 18770398 18770658 -143829272 + MLT1J2 LTR MaLR 41 305 -145 615 247 68 0 chrX 18770970 18771132 -143828798 + MIR SINE MIR 73 245 -17 203 262 24 0 chrX 18771288 18771330 -143828600 - L2 LINE L2 -9 3263 3221 191 250 0 0 chrX 18771478 18771522 -143828408 + MIR SINE MIR 147 190 -72 810 137 48 27 chrX 18772907 18773053 -143826877 + FRAM SINE Alu 1 146 -30 463 188 21 0 chrX 18773055 18773151 -143826779 - L1MD1 LINE L1 -5 6237 6140 624 161 0 99 chrX 18773155 18773316 -143826614 - MER53 DNA DNA 0 189 45 453 36 0 0 chrX 18773366 18773421 -143826509 + (TA)n Simple_repeat Simple_repeat 2 56 0 1474 180 16 3 chrX 18773428 18773733 -143826197 - AluY SINE Alu 0 311 3 28 61 0 0 chrX 18773831 18773880 -143826050 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chrX 18773954 18773979 -143825951 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chrX 18774015 18774051 -143825879 + AT_rich Low_complexity Low_complexity 1 36 0 4147 89 6 6 chrX 18774271 18774897 -143825033 + L1MA3 LINE L1 5523 6148 -157 2982 28 3 0 chrX 18774895 18775259 -143824671 - L1PA6 LINE L1 -212 5942 5578 * 1599 46 0 0 chrX 18775259 18775452 -143824478 + L1PA6 LINE L1 5955 6151 -3 1227 78 0 0 chrX 18775461 18775628 -143824302 + L1MA3 LINE L1 6139 6305 0 465 66 0 0 chrX 18775708 18775769 -143824161 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 210 250 62 0 chrX 18775771 18775819 -143824111 - L2 LINE L2 -12 3301 3251 * 812 258 8 68 chrX 18775787 18775834 -143824096 - MIR SINE MIR -25 237 189 2054 109 34 14 chrX 18775834 18776127 -143823803 + AluSx SINE Alu 1 299 -13 812 258 8 68 chrX 18776127 18776331 -143823599 - MIR SINE MIR -73 189 1 667 241 159 0 chrX 18777444 18777651 -143822279 - MIR SINE MIR -12 250 11 384 269 199 46 chrX 18778150 18778366 -143821564 + MIR SINE MIR 14 262 0 1111 216 88 35 chrX 18778848 18779278 -143820652 - L1MC5 LINE L1 -36 7925 7473 1012 206 72 33 chrX 18779294 18779382 -143820548 - L1MC5 LINE L1 -390 7571 7488 198 0 0 0 chrX 18779382 18779404 -143820526 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 336 64 0 0 chrX 18779403 18779450 -143820480 + (CA)n Simple_repeat Simple_repeat 1 47 0 1012 206 72 33 chrX 18779404 18779720 -143820210 - L1MC5 LINE L1 -473 7488 7199 496 337 154 37 chrX 18780590 18781557 -143818373 + L2 LINE L2 1762 2841 -473 595 322 4 37 chrX 18782411 18782653 -143817277 - MIR SINE MIR -8 254 21 496 240 95 14 chrX 18782700 18782947 -143816983 - LTR16C LTR ERVL 0 491 187 323 244 269 19 chrX 18783705 18783865 -143816065 - MIR SINE MIR -12 250 51 192 77 0 0 chrX 18783871 18783897 -143816033 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 374 269 106 44 chrX 18784160 18784320 -143815610 - MIR3 SINE MIR -28 180 11 241 312 0 13 chrX 18786874 18786951 -143812979 + GA-rich Low_complexity Low_complexity 3 78 0 720 265 83 13 chrX 18788041 18788271 -143811659 - MIR SINE MIR -2 260 15 277 260 0 26 chrX 18788855 18788932 -143810998 - MIR3 SINE MIR -11 197 123 31 0 0 0 chrX 18788943 18788974 -143810956 + AT_rich Low_complexity Low_complexity 1 31 0 193 347 0 0 chrX 18789037 18789086 -143810844 - L2 LINE L2 -88 3225 3177 434 298 132 29 chrX 18789098 18789340 -143810590 + MLT1K LTR MaLR 7 273 -315 236 239 33 22 chrX 18789841 18789933 -143809997 + (TTTA)n Simple_repeat Simple_repeat 2 94 0 468 0 0 0 chrX 18790111 18790163 -143809767 + (TA)n Simple_repeat Simple_repeat 1 52 0 250 371 84 34 chrX 18790720 18790957 -143808973 + L2 LINE L2 2831 3079 -193 1372 279 111 53 chrX 18790974 18791958 -143807972 - L1MEd LINE L1 -5075 1044 4 1561 237 151 8 chrX 18793388 18793877 -143806053 + MLT1G LTR MaLR 32 590 0 345 283 23 107 chrX 18793896 18794019 -143805911 + ERVL LTR ERVL 3764 3896 -1868 1790 180 7 7 chrX 18794019 18794324 -143805606 + AluJb SINE Alu 1 305 -7 345 283 23 107 chrX 18794324 18794508 -143805422 + ERVL LTR ERVL 3896 4045 -1719 401 177 13 0 chrX 18794746 18794825 -143805105 + MER116 DNA Mariner 1 80 0 1210 269 16 72 chrX 18795549 18796051 -143803879 - L2 LINE L2 -36 3277 2804 641 228 146 0 chrX 18796060 18796218 -143803712 + MER5A DNA MER1_type 9 189 0 717 237 65 16 chrX 18796218 18796463 -143803467 - L2 LINE L2 -504 2810 2554 232 365 153 15 chrX 18796611 18796885 -143803045 - L2 LINE L2 -157 3115 2804 189 324 44 0 chrX 18797162 18797230 -143802700 + MIR SINE MIR 75 145 -117 204 328 15 0 chrX 18797303 18797370 -143802560 + MER5A DNA MER1_type 122 189 0 330 289 45 27 chrX 18797370 18797493 -143802437 - MIR3 SINE MIR -48 160 36 631 325 43 5 chrX 18797517 18797726 -143802204 + MIR SINE MIR 46 262 0 608 237 106 32 chrX 18799288 18799654 -143800276 + MLT1H LTR MaLR 30 543 -6 198 276 81 35 chrX 18799795 18799882 -143800048 - L2 LINE L2 -7 3265 3175 523 301 110 34 chrX 18801507 18801716 -143798214 - MIR SINE MIR -31 231 7 254 185 56 0 chrX 18803113 18803167 -143796763 - L1MC5 LINE L1 -73 7888 7832 426 201 52 35 chrX 18803272 18803446 -143796484 - L1MC5 LINE L1 -182 7779 7603 1273 261 75 25 chrX 18803475 18803957 -143795973 - LTR33 LTR ERVL -15 506 1 287 271 57 43 chrX 18803957 18804167 -143795763 - L1MC5 LINE L1 -398 7563 7351 253 268 115 25 chrX 18804149 18804306 -143795624 - L1MC5 LINE L1 -522 7439 7269 * 740 214 31 6 chrX 18804421 18804580 -143795350 + MER5B DNA MER1_type 12 174 -4 185 194 56 0 chrX 18805422 18805458 -143794472 - MIR SINE MIR -11 251 214 397 147 0 0 chrX 18806237 18806305 -143793625 - L1MA9 LINE L1 -38 6274 6207 359 280 96 16 chrX 18806401 18806526 -143793404 + L2 LINE L2 3133 3267 -5 278 106 21 0 chrX 18806646 18806693 -143793237 + (TC)n Simple_repeat Simple_repeat 1 48 0 465 300 98 34 chrX 18806702 18807112 -143792818 + L2 LINE L2 1711 2146 -1168 1335 210 111 36 chrX 18807113 18807446 -143792484 - LTR16C LTR ERVL 0 491 134 503 211 125 8 chrX 18807585 18807713 -143792217 - MIR SINE MIR -30 232 90 381 297 81 14 chrX 18807725 18807873 -143792057 + L2 LINE L2 2201 2358 -956 189 171 0 0 chrX 18808143 18808178 -143791752 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 675 261 136 46 chrX 18808180 18808704 -143791226 - L1ME4a LINE L1 -214 5907 5337 335 320 64 35 chrX 18808788 18808991 -143790939 - L1ME4a LINE L1 -927 5219 5011 2916 9 0 0 chrX 18809070 18809388 -143790542 - AluYb8 SINE Alu 0 318 1 232 208 118 34 chrX 18809415 18809593 -143790337 - L1ME4a LINE L1 -1339 4807 4615 300 259 86 35 chrX 18809696 18809893 -143790037 - L1ME4a LINE L1 -1697 4449 4243 494 277 78 10 chrX 18810143 18810439 -143789491 - L1ME4a LINE L1 -2203 3943 3628 1262 336 102 23 chrX 18810940 18811687 -143788243 - L3 LINE CR1 -85 1492 687 4216 112 10 65 chrX 18811745 18812999 -143786931 + L1MA8 LINE L1 4853 6040 -251 2991 76 32 5 chrX 18813000 18813433 -143786497 + L1MA1 LINE L1 5858 6302 0 1424 119 24 4 chrX 18813481 18813733 -143786197 + L1MA8 LINE L1 6025 6281 -10 420 287 9 19 chrX 18813735 18813843 -143786087 - L3 LINE CR1 -926 651 545 188 321 74 0 chrX 18813936 18814017 -143785913 - L3 LINE CR1 -1066 511 425 1971 206 50 12 chrX 18814022 18814518 -143785412 + L1ME1 LINE L1 5647 6161 -5 459 402 60 22 chrX 18814540 18814906 -143785024 - L3 LINE CR1 -1158 419 40 904 304 179 22 chrX 18815895 18816431 -143783499 - L3 LINE CR1 -2 1575 956 181 326 92 31 chrX 18817267 18817365 -143782565 - MIR SINE MIR -157 105 2 4095 115 58 5 chrX 18817567 18818188 -143781742 + L1MA8 LINE L1 5584 6245 -46 376 77 31 0 chrX 18818188 18818253 -143781677 + (TA)n Simple_repeat Simple_repeat 1 67 0 4095 115 58 5 chrX 18818253 18818298 -143781632 + L1MA8 LINE L1 6245 6286 -5 546 259 29 79 chrX 18818310 18818588 -143781342 + MLT1J LTR MaLR 95 358 -153 2083 144 6 40 chrX 18818792 18819140 -143780790 - MER1B DNA MER1_type 0 337 2 201 253 55 75 chrX 18820372 18820518 -143779412 + L2 LINE L2 1640 1782 -1532 677 134 22 30 chrX 18820539 18820673 -143779257 + L1MD1 LINE L1 6110 6242 0 4222 33 12 12 chrX 18820676 18821192 -143778738 + L1PA3 LINE L1 5640 6155 0 27 0 0 0 chrX 18821192 18821219 -143778711 + AT_rich Low_complexity Low_complexity 1 27 0 288 281 146 28 chrX 18821731 18821909 -143778021 + MIR SINE MIR 24 222 -40 1207 156 9 45 chrX 18822997 18823221 -143776709 + AluJb SINE Alu 83 298 -14 1383 166 108 25 chrX 18823390 18823704 -143776226 + MER58B DNA MER1_type 1 340 -1 640 188 56 80 chrX 18823709 18823922 -143776008 + MER3 DNA MER1_type 1 208 -1 * 1014 147 0 6 chrX 18823760 18823930 -143776000 - MER3 DNA MER1_type 0 209 41 752 207 24 12 chrX 18824074 18824238 -143775692 - LTR16C LTR ERVL -2 489 324 2798 44 11 0 chrX 18824238 18824650 -143775280 - L1P2 LINE L1 -723 5431 5016 2845 22 0 0 chrX 18824650 18824960 -143774970 + L1PA5 LINE L1 5840 6151 -3 821 246 66 6 chrX 18824966 18825149 -143774781 - LTR16C LTR ERVL -143 348 155 2341 85 14 0 chrX 18825889 18826184 -143773746 + AluSg SINE Alu 1 299 -11 2282 147 70 0 chrX 18826679 18827020 -143772910 - MLT1A1 LTR MaLR 0 365 1 1542 216 50 76 chrX 18827039 18827497 -143772433 - MLT1J1 LTR MaLR 0 446 1 1651 188 3 16 chrX 18828881 18829184 -143770746 + AluJb SINE Alu 1 299 -13 540 286 24 36 chrX 18829867 18830035 -143769895 - MER5A DNA MER1_type -3 186 21 509 275 21 7 chrX 18830370 18830512 -143769418 + MIR SINE MIR 116 259 -3 338 380 40 0 chrX 18830556 18830782 -143769148 - L2 LINE L2 -623 2691 2457 5126 178 17 3 chrX 18831086 18832385 -143767545 + L1MB7 LINE L1 4859 6176 -8 525 157 22 0 chrX 18832392 18832526 -143767404 + G-rich Low_complexity Low_complexity 5 141 0 262 267 17 17 chrX 18832528 18832644 -143767286 + GA-rich Low_complexity Low_complexity 5 120 0 376 196 56 19 chrX 18832722 18832829 -143767101 + MIR3 SINE MIR 59 169 -39 21 0 0 0 chrX 18833867 18833888 -143766042 + AT_rich Low_complexity Low_complexity 1 21 0 345 327 0 0 chrX 18834041 18834145 -143765785 + L2 LINE L2 2683 2786 -528 258 356 56 56 chrX 18834271 18834538 -143765392 + L2 LINE L2 2949 3215 -57 1488 217 40 29 chrX 18834679 18835057 -143764873 - L1ME3A LINE L1 -112 6058 5677 1755 130 12 0 chrX 18836299 18836552 -143763378 - L1PB3 LINE L1 -2 6152 5897 688 303 108 12 chrX 18836873 18837216 -143762714 - LTR16C LTR ERVL -43 448 73 397 284 47 9 chrX 18837726 18837942 -143761988 - L2 LINE L2 -26 3287 2974 700 218 2 3 chrX 18838358 18838507 -143761423 - L1ME1 LINE L1 -5 6161 6031 214 267 133 0 chrX 18839090 18839180 -143760750 - MIR SINE MIR -10 252 151 22 35 0 0 chrX 18839507 18839536 -143760394 + AT_rich Low_complexity Low_complexity 1 29 0 2432 90 3 0 chrX 18839580 18839892 -143760038 + AluSp SINE Alu 1 313 0 583 187 179 0 chrX 18840080 18840214 -143759716 + MER5A DNA MER1_type 26 183 -6 408 206 65 11 chrX 18840453 18840545 -143759385 + L2 LINE L2 3187 3283 -30 2263 142 35 16 chrX 18840548 18840921 -143759009 - MSTB LTR MaLR 0 426 47 314 135 0 0 chrX 18840921 18840973 -143758957 + MADE1 DNA Mariner 1 52 -28 817 227 57 43 chrX 18841185 18841467 -143758463 - MLT1J1 LTR MaLR -19 427 142 2361 214 114 2 chrX 18841468 18841950 -143757980 + MLT1F LTR MaLR 1 536 -6 447 241 90 23 chrX 18841955 18842088 -143757842 - MLT1J2 LTR MaLR -308 142 1 193 29 59 0 chrX 18844229 18844263 -143755667 + (TA)n Simple_repeat Simple_repeat 1 36 0 2135 117 30 0 chrX 18845413 18845711 -143754219 - AluSx SINE Alu -5 307 1 790 179 231 0 chrX 18845897 18846109 -143753821 - MER5C DNA MER1_type -63 261 1 504 241 41 67 chrX 18846635 18846830 -143753100 + MIR SINE MIR 19 208 -54 25 0 0 0 chrX 18848324 18848349 -143751581 + AT_rich Low_complexity Low_complexity 1 25 0 426 217 0 0 chrX 18848423 18848506 -143751424 + LTR16A LTR ERVL 366 448 -2 726 282 138 52 chrX 18849915 18850372 -143749558 - MLT1H LTR MaLR -16 533 38 431 323 180 6 chrX 18850439 18850606 -143749324 + MER91A DNA MER1_type 1 196 0 331 280 211 32 chrX 18850986 18851265 -143748665 + MLT1J1 LTR MaLR 115 443 -3 531 324 14 0 chrX 18851292 18851440 -143748490 - L2 LINE L2 -2028 1286 1137 428 272 32 8 chrX 18851448 18851573 -143748357 + L2 LINE L2 595 722 -2592 687 237 62 17 chrX 18851609 18851786 -143748144 - LTR16A1 LTR ERVL -3 454 270 344 210 227 17 chrX 18851777 18851896 -143748034 - LTR16A1 LTR ERVL -313 144 1 * 357 361 105 13 chrX 18852770 18853008 -143746922 - L2 LINE L2 -13 3259 3000 34 42 0 0 chrX 18853035 18853083 -143746847 + AT_rich Low_complexity Low_complexity 1 48 0 2071 228 55 35 chrX 18854099 18854681 -143745249 + L1ME1 LINE L1 5581 6334 0 907 142 0 22 chrX 18855071 18855205 -143744725 + FLAM_C SINE Alu 1 131 -2 502 172 11 0 chrX 18855636 18855729 -143744201 + MER20 DNA MER1_type 126 219 0 22 35 0 0 chrX 18857863 18857892 -143742038 + AT_rich Low_complexity Low_complexity 1 29 0 2342 122 35 24 chrX 18858641 18859010 -143740920 - THE1C LTR MaLR 0 375 3 1600 87 31 4 chrX 18859827 18860056 -143739874 + L1P4 LINE L1 5316 5550 -615 391 317 49 30 chrX 18860076 18860341 -143739589 + L1MC4a LINE L1 7146 7415 -393 * 423 273 119 37 chrX 18860309 18860686 -143739244 + L1MC5 LINE L1 7292 7699 -262 679 203 157 0 chrX 18860743 18860896 -143739034 + MER5A DNA MER1_type 13 189 0 2277 155 76 9 chrX 18861302 18861735 -143738195 + MLT1C LTR MaLR 6 467 0 787 270 51 13 chrX 18861793 18862030 -143737900 - MIR SINE MIR -11 251 6 516 231 25 85 chrX 18863183 18863382 -143736548 - 7SK RNA RNA -1 192 6 257 61 0 0 chrX 18863383 18863416 -143736514 - MIR SINE MIR -61 147 115 1453 256 60 46 chrX 18863517 18863904 -143736026 - L2 LINE L2 -176 3137 2743 2485 68 0 0 chrX 18863904 18864199 -143735731 + AluY SINE Alu 1 295 -16 1453 256 60 46 chrX 18864199 18864545 -143735385 - L2 LINE L2 -570 2743 2403 1035 210 6 0 chrX 18864545 18864726 -143735204 - MER58A DNA MER1_type 0 224 43 1535 261 43 21 chrX 18864789 18865210 -143734720 + MLT1G1 LTR MaLR 1 430 -165 420 117 0 0 chrX 18865281 18865358 -143734572 + (GA)n Simple_repeat Simple_repeat 2 78 0 2084 118 0 0 chrX 18865360 18865640 -143734290 - AluSx SINE Alu -32 280 1 469 156 21 31 chrX 18865642 18865738 -143734192 + MLT1G1 LTR MaLR 491 585 -10 773 286 103 41 chrX 18865750 18866112 -143733818 - MLT1I LTR MaLR 0 409 49 827 266 24 12 chrX 18866171 18866419 -143733511 - L2 LINE L2 -941 2373 2123 1766 156 64 26 chrX 18866419 18866765 -143733165 + THE1C LTR MaLR 1 359 -16 1269 282 83 5 chrX 18866766 18867188 -143732742 - L2 LINE L2 -1196 2118 1664 398 268 54 36 chrX 18867236 18867348 -143732582 - MIR3 SINE MIR -88 120 7 1184 209 19 0 chrX 18868324 18868530 -143731400 - MER63A DNA MER1_type 0 210 1 350 163 7 220 chrX 18868722 18868863 -143731067 - MER5B DNA MER1_type -62 116 6 432 333 11 6 chrX 18868878 18869052 -143730878 + MER5B DNA MER1_type 4 178 0 516 281 85 6 chrX 18869854 18870018 -143729912 + MIR SINE MIR 31 207 -55 882 192 54 6 chrX 18870570 18870737 -143729193 - MER5B DNA MER1_type -3 175 1 422 293 57 0 chrX 18870744 18870850 -143729080 + L2 LINE L2 3144 3255 -17 317 263 76 44 chrX 18872080 18872280 -143727650 - MER20B DNA MER1_type -5 214 2 2168 200 63 30 chrX 18873295 18873821 -143726109 + L1ME3 LINE L1 5620 6162 0 198 0 0 0 chrX 19073825 19073847 -143526083 + (T)n Simple_repeat Simple_repeat 1 22 0 6653 30 6 1 chrX 19074817 19075613 -143524317 + L1PA7 LINE L1 5355 6154 0 228 35 0 0 chrX 19079300 19079329 -143520601 + (A)n Simple_repeat Simple_repeat 1 29 0 695 243 140 0 chrX 19081082 19081296 -143518634 - MIR SINE MIR -17 245 2 227 250 23 34 chrX 19083021 19083109 -143516821 + CT-rich Low_complexity Low_complexity 4 90 0 318 174 206 45 chrX 19083895 19084050 -143515880 - Charlie7 DNA MER1_type 0 2612 2433 25 31 0 0 chrX 19086093 19086125 -143513805 + AT_rich Low_complexity Low_complexity 1 32 0 610 228 16 8 chrX 19088910 19089037 -143510893 + MER5A DNA MER1_type 55 182 -7 22 0 0 0 chrX 19089285 19089307 -143510623 + AT_rich Low_complexity Low_complexity 1 22 0 917 132 0 0 chrX 19089830 19089959 -143509971 + FLAM_C SINE Alu 2 130 -13 24 0 0 0 chrX 19090161 19090185 -143509745 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 19091243 19091272 -143508658 + AT_rich Low_complexity Low_complexity 1 29 0 299 133 0 33 chrX 19093212 19093272 -143506658 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 320 278 0 41 chrX 19093272 19093369 -143506561 + L1MC4 LINE L1 6611 6703 -1339 183 156 0 0 chrX 19093369 19093401 -143506529 + (TA)n Simple_repeat Simple_repeat 2 33 0 279 0 0 0 chrX 19093401 19093432 -143506498 + (CA)n Simple_repeat Simple_repeat 2 32 0 249 222 0 0 chrX 19093694 19093748 -143506182 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chrX 19095221 19095242 -143504688 + AT_rich Low_complexity Low_complexity 1 21 0 330 26 0 0 chrX 19095581 19095620 -143504310 + (TG)n Simple_repeat Simple_repeat 2 40 0 1720 151 41 0 chrX 19097268 19097563 -143502367 - AluJb SINE Alu 0 306 1 206 174 22 0 chrX 19097882 19097928 -143502002 + (TA)n Simple_repeat Simple_repeat 2 48 0 917 247 55 13 chrX 19097992 19098227 -143501703 + MIR SINE MIR 18 262 0 2146 106 69 29 chrX 19098862 19099212 -143500718 + THE1B LTR MaLR 1 364 0 11114 76 15 2 chrX 19099212 19100757 -143499173 + THE1B-int LTR MaLR 1 1565 -15 198 0 0 0 chrX 19101767 19101789 -143498141 + (T)n Simple_repeat Simple_repeat 1 22 0 366 313 47 69 chrX 19102624 19102857 -143497073 + L1M2 LINE L1 836 1063 -5786 255 133 0 0 chrX 19103099 19103144 -143496786 + (TCC)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chrX 19103577 19103601 -143496329 + GC_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 19104783 19104819 -143495111 + GC_rich Low_complexity Low_complexity 1 36 0 437 0 0 19 chrX 19105780 19105834 -143494096 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 184 331 25 58 chrX 19105952 19106073 -143493857 - L3b LINE CR1 -93 1490 1374 218 254 55 0 chrX 19106379 19106434 -143493496 - MIR3 SINE MIR -13 195 138 2302 73 73 6 chrX 19107055 19107397 -143492533 - L1MA1 LINE L1 0 6302 5938 1545 176 124 21 chrX 19107473 19107803 -143492127 - MLT1A1 LTR MaLR 0 365 2 261 284 114 23 chrX 19107909 19107997 -143491933 + L2 LINE L2 3139 3234 -38 1570 138 69 12 chrX 19108747 19109067 -143490863 - L1MB8 LINE L1 0 6178 5841 207 100 0 0 chrX 19109452 19109482 -143490448 + (TG)n Simple_repeat Simple_repeat 2 31 0 408 287 143 22 chrX 19109531 19109761 -143490169 + MIR SINE MIR 2 259 -3 822 189 20 7 chrX 19109863 19110011 -143489919 + MER5A DNA MER1_type 40 189 0 465 328 62 31 chrX 19110344 19110603 -143489327 + L3 LINE CR1 1084 1350 -227 552 275 84 76 chrX 19110833 19111215 -143488715 + LTR16C LTR ERVL 75 459 -32 521 222 53 41 chrX 19111960 19112131 -143487799 + MER5A DNA MER1_type 3 175 -14 381 273 31 72 chrX 19112149 19112343 -143487587 - MER5A DNA MER1_type -2 187 2 382 277 0 80 chrX 19112357 19112494 -143487436 - L2 LINE L2 0 3272 3147 297 0 0 0 chrX 19114279 19114312 -143485618 + (TG)n Simple_repeat Simple_repeat 1 33 0 4693 145 37 10 chrX 19114326 19115460 -143484470 - L1MB3 LINE L1 -31 6152 4985 1108 145 5 38 chrX 19115460 19115646 -143484284 - AluJb SINE Alu -8 304 125 349 209 0 0 chrX 19115646 19115713 -143484217 - L1MB3 LINE L1 -1171 4975 4909 2683 40 9 0 chrX 19115727 19116054 -143483876 - L1PA4 LINE L1 -5 6150 5821 883 43 0 0 chrX 19116054 19116169 -143483761 + L1P LINE L1 5313 5427 -728 1707 215 33 7 chrX 19116171 19116631 -143483299 - L1MB3 LINE L1 -1227 4919 4448 3177 161 53 28 chrX 19117000 19117367 -143482563 - L1PB4 LINE L1 -3 6153 5760 315 0 0 0 chrX 19117367 19117402 -143482528 + (TA)n Simple_repeat Simple_repeat 1 35 0 3177 161 53 28 chrX 19117402 19117711 -143482219 - L1PB4 LINE L1 -396 5760 5460 693 202 30 10 chrX 19117711 19117909 -143482021 - L1PB4 LINE L1 -1645 4501 4300 23 0 0 0 chrX 19118067 19118090 -143481840 + AT_rich Low_complexity Low_complexity 1 23 0 334 320 45 23 chrX 19118279 19118588 -143481342 - L1ME4a LINE L1 -162 5959 5644 222 297 123 64 chrX 19119737 19119956 -143479974 - L3 LINE CR1 -10 1567 1336 267 224 57 130 chrX 19119992 19120119 -143479811 + L2 LINE L2 2150 2260 -1054 1830 118 42 28 chrX 19120119 19120407 -143479523 - AluSx SINE Alu -16 296 5 267 224 57 130 chrX 19120407 19120471 -143479459 + L2 LINE L2 2260 2327 -987 2224 89 0 3 chrX 19120547 19120838 -143479092 + THE1B LTR MaLR 3 292 -72 23 0 0 0 chrX 19122973 19122996 -143476934 + AT_rich Low_complexity Low_complexity 1 23 0 180 375 69 0 chrX 19123166 19123238 -143476692 + MIR SINE MIR 27 103 -105 384 272 0 39 chrX 19123281 19123384 -143476546 - MIR SINE MIR -4 258 160 200 281 16 16 chrX 19123709 19123773 -143476157 + MIR SINE MIR 184 247 -15 21 36 0 0 chrX 19124459 19124487 -143475443 + AT_rich Low_complexity Low_complexity 1 28 0 1893 161 0 13 chrX 19127941 19128240 -143471690 + AluJo SINE Alu 1 295 -17 24 53 0 0 chrX 19131236 19131274 -143468656 + AT_rich Low_complexity Low_complexity 1 38 0 205 332 180 40 chrX 19131661 19131983 -143467947 + L2 LINE L2 2841 3207 -65 859 169 20 90 chrX 19132099 19132300 -143467630 + MER5A DNA MER1_type 1 187 -2 216 0 0 0 chrX 19132652 19132676 -143467254 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 406 318 41 0 chrX 19132771 19132921 -143467009 + MIR SINE MIR 34 188 -63 191 288 0 0 chrX 19133390 19133449 -143466481 - L3 LINE CR1 -146 1431 1373 661 179 0 0 chrX 19133453 19133559 -143466371 + FLAM_C SINE Alu 3 108 -35 261 296 70 17 chrX 19134037 19134209 -143465721 - L1ME LINE L1 -359 5762 5582 5119 207 53 20 chrX 19135816 19136921 -143463009 - L1MDa LINE L1 -5377 1163 22 491 343 59 11 chrX 19136938 19137287 -143462643 + L2 LINE L2 2702 3069 -203 303 67 33 17 chrX 19137367 19137427 -143462503 + (TA)n Simple_repeat Simple_repeat 1 61 0 24483 43 1 35 chrX 19137615 19140791 -143459139 - L1P LINE L1 -3079 3067 1 9682 180 30 7 chrX 19140783 19141173 -143458757 - L1MA3 LINE L1 -442 6514 6134 * 2274 127 8 8 chrX 19141173 19141528 -143458402 - THE1A LTR MaLR 0 355 1 9682 180 30 7 chrX 19141528 19142705 -143457225 - L1MA3 LINE L1 -822 6134 4871 447 19 0 0 chrX 19142705 19142757 -143457173 + (TG)n Simple_repeat Simple_repeat 2 53 0 9682 180 30 7 chrX 19142757 19143712 -143456218 - L1MA3 LINE L1 -2085 4871 3940 5347 139 32 0 chrX 19143723 19144635 -143455295 - L1PA13 LINE L1 -11 6152 5235 847 92 92 0 chrX 19144635 19144765 -143455165 + MSTA LTR MaLR 1 142 -286 8728 170 13 7 chrX 19144766 19144911 -143455019 - L1PA13 LINE L1 -1107 5039 4896 6624 113 31 18 chrX 19144911 19145968 -143453962 - MER11C LTR ERVK 0 1071 1 8728 170 13 7 chrX 19145968 19147480 -143452450 - L1PA13 LINE L1 -1250 4896 3371 3078 222 12 1 chrX 19147582 19148349 -143451581 - L1PA13 LINE L1 -3068 3078 2304 7801 47 0 0 chrX 19148363 19149345 -143450585 + L1P LINE L1 958 1939 -4207 677 329 20 14 chrX 19149445 19149940 -143449990 + L1P LINE L1 1585 2082 -4064 11021 200 68 10 chrX 19149940 19152586 -143447344 - L1MA3 LINE L1 -3826 2971 165 4557 197 39 17 chrX 19152583 19153812 -143446118 - L1 LINE L1 -2839 4726 3458 * 378 0 0 0 chrX 19153812 19153854 -143446076 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 4557 197 39 17 chrX 19153854 19153977 -143445953 - L1 LINE L1 -4107 3458 3339 476 206 20 20 chrX 19153973 19154075 -143445855 + L1MCa LINE L1 510 611 -5815 * 4223 230 77 20 chrX 19154085 19156363 -143443567 + L1MCb LINE L1 500 2973 -3591 1945 259 31 7 chrX 19156373 19156983 -143442947 + L1M4 LINE L1 4518 5142 -1004 18028 35 5 2 chrX 19157087 19160038 -143439892 + L1PA3 LINE L1 3196 6152 -3 2607 126 22 7 chrX 19160045 19160504 -143439426 + L1MA3 LINE L1 5840 6305 0 1113 275 85 23 chrX 19160517 19160990 -143438940 - L1MCa LINE L1 -5899 527 26 2928 227 59 21 chrX 19161024 19161476 -143438454 - L1MDa LINE L1 -3946 2594 2161 1887 138 0 24 chrX 19161476 19161792 -143438138 + AluSx SINE Alu 1 309 0 2928 227 59 21 chrX 19161792 19162298 -143437632 - L1MDa LINE L1 -4379 2161 1598 21844 172 28 29 chrX 19162327 19163057 -143436873 + L1PA11 LINE L1 7 737 -6875 1818 131 4 4 chrX 19163057 19163317 -143436613 - AluSc SINE Alu -49 260 1 21844 172 28 29 chrX 19163317 19166131 -143433799 + L1PA11 LINE L1 737 3554 -4058 315 0 0 0 chrX 19166131 19166166 -143433764 + (CA)n Simple_repeat Simple_repeat 2 36 0 21844 172 28 29 chrX 19166166 19168659 -143431271 + L1PA11 LINE L1 3554 7124 -488 2116 122 0 0 chrX 19168659 19168954 -143430976 + AluSx SINE Alu 3 297 -15 21844 172 28 29 chrX 19168954 19169443 -143430487 + L1PA11 LINE L1 7124 7612 0 692 213 147 58 chrX 19169446 19169671 -143430259 - MER76 LTR ERV -443 245 1 1881 210 40 38 chrX 19169720 19170317 -143429613 - L1MDa LINE L1 -4987 1556 992 348 336 126 78 chrX 19170340 19171122 -143428808 - L1MDa LINE L1 -5551 989 476 1002 268 32 42 chrX 19171162 19171565 -143428365 - L1MDa LINE L1 -6128 412 14 6054 62 5 14 chrX 19171620 19172176 -143427754 - L1PA8 LINE L1 -136 6036 5490 2288 91 3 7 chrX 19172176 19172484 -143427446 - AluSc SINE Alu -2 307 1 6054 62 5 14 chrX 19172484 19172796 -143427134 - L1PA8 LINE L1 -682 5490 5177 * 6230 88 2 79 chrX 19172795 19173842 -143426088 + L1PA8 LINE L1 4215 5180 -966 271 256 124 73 chrX 19174069 19174303 -143425627 + MARNA DNA Mariner 133 378 -208 245 298 106 19 chrX 19174391 19174495 -143425435 - MIR SINE MIR -70 192 80 22 0 0 0 chrX 19175833 19175855 -143424075 + AT_rich Low_complexity Low_complexity 1 22 0 1730 152 9 67 chrX 19175855 19176171 -143423759 + AluJo SINE Alu 1 298 -14 2010 173 116 8 chrX 19176552 19177109 -143422821 - L1MDa LINE L1 -3890 2650 2173 1815 144 14 7 chrX 19178995 19179279 -143420651 + AluJo SINE Alu 6 291 -21 21 0 0 0 chrX 19187774 19187795 -143412135 + AT_rich Low_complexity Low_complexity 1 21 0 310 41 20 20 chrX 19188669 19188718 -143411212 + (TTG)n Simple_repeat Simple_repeat 2 50 0 24 53 0 0 chrX 19189049 19189087 -143410843 + AT_rich Low_complexity Low_complexity 1 38 0 231 146 0 0 chrX 19191567 19191608 -143408322 + (CA)n Simple_repeat Simple_repeat 2 42 0 353 286 26 71 chrX 19193442 19193596 -143406334 + MIR SINE MIR 4 150 -112 195 184 0 0 chrX 19195230 19195268 -143404662 - L2 LINE L2 0 3313 3276 15262 179 32 17 chrX 19195688 19200412 -143399518 - L1MA5 LINE L1 -10 6992 2159 1797 223 58 63 chrX 19200412 19200969 -143398961 - MLT2B3 LTR ERVL 0 554 1 15262 179 32 17 chrX 19200969 19201657 -143398273 - L1MA5 LINE L1 -4843 2159 1483 22 35 0 0 chrX 19201809 19201838 -143398092 + AT_rich Low_complexity Low_complexity 1 29 0 2356 72 0 3 chrX 19202878 19203170 -143396760 - AluSc SINE Alu -18 291 1 995 208 40 0 chrX 19203348 19203550 -143396380 + MER6B DNA MER2_type 1 210 0 846 224 78 41 chrX 19203551 19203770 -143396160 - MIR SINE MIR -10 252 32 469 256 143 25 chrX 19204116 19204319 -143395611 + MIR SINE MIR 2 228 -34 635 266 58 34 chrX 19205489 19205696 -143394234 + MIR SINE MIR 13 224 -38 1238 133 0 0 chrX 19205699 19205879 -143394051 - AluSg/x SINE Alu 0 309 130 24 0 0 0 chrX 19206345 19206369 -143393561 + AT_rich Low_complexity Low_complexity 1 24 0 31522 86 10 17 chrX 19206476 19212638 -143387292 + L1PA7 LINE L1 1 6134 -335 1916 131 21 3 chrX 19212638 19212929 -143387001 + AluSx SINE Alu 2 297 -15 31522 86 10 17 chrX 19212929 19213262 -143386668 + L1PA7 LINE L1 6134 6468 -1 955 178 112 0 chrX 19213464 19213661 -143386269 + MER20 DNA MER1_type 1 219 0 281 270 131 7 chrX 19214140 19214277 -143385653 - MER103 DNA DNA -1 165 12 239 349 177 17 chrX 19214693 19214925 -143385005 + L3 LINE CR1 120 388 -1189 5951 87 10 22 chrX 19216219 19217085 -143382845 - L1PA13 LINE L1 -4 6159 5304 240 281 0 16 chrX 19217946 19218010 -143381920 + GA-rich Low_complexity Low_complexity 3 65 0 465 350 62 15 chrX 19218107 19218381 -143381549 - L2 LINE L2 -22 3291 3005 1808 224 45 23 chrX 19218406 19218893 -143381037 - L2 LINE L2 -1264 2050 1553 25 51 0 0 chrX 19220244 19220283 -143379647 + AT_rich Low_complexity Low_complexity 1 39 0 3884 108 36 0 chrX 19221023 19221600 -143378330 - LTR43 LTR ERV1 -4 598 1 758 215 252 28 chrX 19221898 19222219 -143377711 - L2 LINE L2 -2263 1051 659 640 260 98 20 chrX 19222218 19222422 -143377508 + MIR SINE MIR 42 261 -1 * 265 241 0 0 chrX 19222479 19222533 -143377397 - L2 LINE L2 -5 3308 3255 21 0 0 0 chrX 19223062 19223083 -143376847 + AT_rich Low_complexity Low_complexity 1 21 0 225 238 0 48 chrX 19224785 19224848 -143375082 - MER5A DNA MER1_type -123 66 7 576 88 0 0 chrX 19224964 19225044 -143374886 - MADE1 DNA Mariner 0 80 1 379 239 184 18 chrX 19227265 19227374 -143372556 + L1ME LINE L1 5541 5667 -454 363 293 102 81 chrX 19228916 19229288 -143370642 + L2 LINE L2 2934 3313 0 428 0 19 0 chrX 19229672 19229724 -143370206 + (TG)n Simple_repeat Simple_repeat 2 54 0 1887 160 0 0 chrX 19229888 19230176 -143369754 + AluJb SINE Alu 1 288 -24 24 32 0 0 chrX 19230514 19230545 -143369385 + AT_rich Low_complexity Low_complexity 1 31 0 486 247 139 30 chrX 19230571 19230737 -143369193 - MIR SINE MIR -43 219 36 11196 108 170 3 chrX 19230858 19231093 -143368837 - Tigger1 DNA MER2_type 0 2418 2224 207 0 0 0 chrX 19231093 19231116 -143368814 + (TTA)n Simple_repeat Simple_repeat 2 24 0 11196 108 170 3 chrX 19231116 19232718 -143367212 - Tigger1 DNA MER2_type -194 2224 274 1431 58 0 5 chrX 19232714 19232902 -143367028 - Tigger1 DNA MER2_type -1562 856 670 * 990 62 0 0 chrX 19232915 19233043 -143366887 - Tigger1 DNA MER2_type -1335 1083 956 1607 143 23 0 chrX 19233044 19233309 -143366621 - Tigger1 DNA MER2_type -2146 272 2 568 307 119 14 chrX 19233334 19233552 -143366378 - MIR SINE MIR -2 260 20 2521 109 13 13 chrX 19234330 19234705 -143365225 - THE1C LTR MaLR 0 375 1 11025 96 30 1 chrX 19234705 19236240 -143363690 - THE1C-int LTR MaLR 0 1580 1 2425 116 33 0 chrX 19236240 19236603 -143363327 - THE1C LTR MaLR 0 375 1 21 0 0 0 chrX 19237205 19237226 -143362704 + AT_rich Low_complexity Low_complexity 1 21 0 878 264 96 41 chrX 19237357 19237744 -143362186 + L1MEc LINE L1 17 424 -6116 2821 234 118 12 chrX 19237746 19238725 -143361205 + L1M4 LINE L1 2407 3488 -2658 24 53 0 0 chrX 19239253 19239291 -143360639 + AT_rich Low_complexity Low_complexity 1 38 0 222 344 16 8 chrX 19240378 19240506 -143359424 + MIR SINE MIR 107 235 -27 1119 278 150 22 chrX 19240732 19241178 -143358752 - MLT2F LTR ERVL -158 505 3 21 0 0 0 chrX 19242076 19242097 -143357833 + AT_rich Low_complexity Low_complexity 1 21 0 462 295 14 14 chrX 19243148 19243287 -143356643 - MIR3 SINE MIR -43 165 27 799 227 37 28 chrX 19243336 19243552 -143356378 - L2 LINE L2 -609 2705 2488 315 255 157 0 chrX 19243612 19243714 -143356216 - L2 LINE L2 0 3313 3196 652 219 57 72 chrX 19244372 19244637 -143355293 + MIR SINE MIR 2 262 0 1976 251 46 97 chrX 19246221 19246843 -143353087 - L2 LINE L2 0 3313 2776 1838 153 10 3 chrX 19246843 19247131 -143352799 + AluJb SINE Alu 1 290 -22 1976 251 46 97 chrX 19247131 19247551 -143352379 - L2 LINE L2 -537 2776 2336 326 265 152 39 chrX 19248600 19248830 -143351100 + L1MEc LINE L1 1300 1555 -4975 517 252 126 35 chrX 19248897 19249221 -143350709 + L1MEc LINE L1 1726 2043 -860 1712 228 62 39 chrX 19249697 19250242 -143349688 - MER68 LTR ERV1 -4 558 1 23 33 0 0 chrX 19250368 19250398 -143349532 + AT_rich Low_complexity Low_complexity 1 30 0 773 314 216 9 chrX 19251491 19252033 -143347897 - L2 LINE L2 -2078 1236 583 441 223 128 34 chrX 19254040 19254179 -143345751 + MIR SINE MIR 98 255 -7 1916 123 47 0 chrX 19254180 19254456 -143345474 + AluJb SINE Alu 1 289 -23 22 56 0 0 chrX 19255028 19255064 -143344866 + AT_rich Low_complexity Low_complexity 1 36 0 4517 111 8 1 chrX 19255704 19256364 -143343566 + L1PA14 LINE L1 5494 6157 -4 478 266 69 26 chrX 19257994 19258178 -143341752 + MIR SINE MIR 2 191 -17 * 665 270 35 15 chrX 19258161 19258361 -143341569 + MIR SINE MIR 57 260 -2 25 0 0 0 chrX 19259373 19259398 -143340532 + AT_rich Low_complexity Low_complexity 1 25 0 38 61 0 0 chrX 19259666 19259732 -143340198 + AT_rich Low_complexity Low_complexity 1 66 0 248 238 0 12 chrX 19259884 19259964 -143339966 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 530 240 114 65 chrX 19260494 19260740 -143339190 + L2 LINE L2 3048 3305 -8 357 302 52 10 chrX 19261022 19261118 -143338812 + L2 LINE L2 3168 3267 -5 2107 101 7 7 chrX 19261206 19261221 -143338709 - AluSx SINE Alu -16 296 282 405 0 0 0 chrX 19261221 19261266 -143338664 + (TG)n Simple_repeat Simple_repeat 1 45 0 2107 101 7 7 chrX 19261266 19261546 -143338384 - AluSx SINE Alu -29 283 1 258 56 0 0 chrX 19264003 19264039 -143335891 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1464 145 24 79 chrX 19264046 19264336 -143335594 - AluJb SINE Alu -38 274 1 321 231 62 0 chrX 19264437 19264502 -143335428 - MER58 DNA MER1_type 0 2420 2352 1792 37 0 0 chrX 19266136 19266353 -143333577 + L1PA5 LINE L1 5931 6147 -7 597 276 80 36 chrX 19266877 19267102 -143332828 - MIR SINE MIR -8 254 20 276 274 150 9 chrX 19269290 19269403 -143330527 - MER94 DNA DNA 0 134 6 2193 95 0 0 chrX 19269403 19269709 -143330221 + AluSx SINE Alu 1 306 0 291 93 0 0 chrX 19271429 19271472 -143328458 + (GGA)n Simple_repeat Simple_repeat 2 44 0 2192 107 7 0 chrX 19275551 19275850 -143324080 + AluSx SINE Alu 12 312 0 215 59 0 29 chrX 19275876 19275910 -143324020 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 255 270 101 0 chrX 19276622 19276711 -143323219 - MLT1L LTR MaLR -52 563 466 537 304 72 13 chrX 19276742 19276979 -143322951 - MLT1L LTR MaLR -250 365 115 644 267 42 50 chrX 19277269 19277509 -143322421 + MIR SINE MIR 15 252 -10 375 192 26 0 chrX 19277698 19277776 -143322154 - MER116 DNA Mariner 0 80 1 561 282 92 34 chrX 19277951 19278213 -143321717 + L2 LINE L2 3005 3281 -32 189 74 0 0 chrX 19278225 19278252 -143321678 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chrX 19280883 19280906 -143319024 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 19281494 19281516 -143318414 + AT_rich Low_complexity Low_complexity 1 22 0 428 324 104 23 chrX 19282339 19282598 -143317332 - L3 LINE CR1 -6 1571 1292 * 586 327 178 7 chrX 19282594 19282869 -143317061 + L3 LINE CR1 1253 1574 -3 662 313 167 43 chrX 19283006 19283717 -143316213 - L3 LINE CR1 -404 1173 324 21 0 0 0 chrX 19284720 19284741 -143315189 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chrX 19285709 19285745 -143314185 + AT_rich Low_complexity Low_complexity 1 36 0 812 102 0 0 chrX 19286380 19286498 -143313432 - AluSx SINE Alu -1 309 192 870 112 104 0 chrX 19286499 19286624 -143313306 - AluSx SINE Alu -171 141 4 24 32 0 0 chrX 19287390 19287421 -143312509 + AT_rich Low_complexity Low_complexity 1 31 0 245 313 121 20 chrX 19288025 19288124 -143311806 - L2 LINE L2 -210 3062 2954 207 0 0 0 chrX 19288125 19288148 -143311782 + (A)n Simple_repeat Simple_repeat 1 23 0 272 304 56 40 chrX 19288328 19288453 -143311477 - L2 LINE L2 -618 2696 2570 1775 123 57 65 chrX 19289049 19289091 -143310839 - THE1B LTR MaLR 0 364 323 2294 71 0 24 chrX 19289091 19289388 -143310542 + AluY SINE Alu 1 290 -21 1775 123 57 65 chrX 19289388 19289712 -143310218 - THE1B LTR MaLR -41 323 1 25 31 0 0 chrX 19290128 19290160 -143309770 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chrX 19290305 19290334 -143309596 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 19290935 19290956 -143308974 + AT_rich Low_complexity Low_complexity 1 21 0 366 281 70 76 chrX 19291704 19291875 -143308055 - MIR3 SINE MIR -1 207 38 275 368 116 12 chrX 19292078 19292336 -143307594 + L2 LINE L2 2988 3272 0 504 268 6 32 chrX 19292930 19293109 -143306821 - MIR SINE MIR -66 196 25 560 218 89 50 chrX 19293113 19293292 -143306638 - MER5A DNA MER1_type -2 187 2 23 0 0 0 chrX 19294570 19294593 -143305337 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chrX 19294733 19294760 -143305170 + AT_rich Low_complexity Low_complexity 1 27 0 2142 169 0 0 chrX 19295355 19295703 -143304227 + MER7A DNA MER2_type 1 346 0 1246 231 16 13 chrX 19295747 19296059 -143303871 - AluSq SINE Alu 0 313 1 2321 99 3 0 chrX 19296235 19296547 -143303383 - AluSq SINE Alu 0 313 1 839 234 140 9 chrX 19296656 19296878 -143303052 - MIR SINE MIR -4 258 8 3966 99 32 3 chrX 19297097 19297682 -143302248 + LTR43 LTR ERV1 1 602 0 237 327 58 0 chrX 19299930 19300034 -143299896 - MIR3 SINE MIR -6 202 93 24 32 0 0 chrX 19300910 19300941 -143298989 + AT_rich Low_complexity Low_complexity 1 31 0 213 109 65 0 chrX 19301066 19301112 -143298818 + A-rich Low_complexity Low_complexity 2 50 0 190 191 0 21 chrX 19302261 19302308 -143297622 + L2 LINE L2 3267 3312 -1 4636 73 2 2 chrX 19302714 19303314 -143296616 - MER4A LTR ERV1 0 600 1 394 316 61 40 chrX 19303548 19303776 -143296154 + MIR SINE MIR 20 252 -10 780 193 112 6 chrX 19304059 19304220 -143295710 + MER45A DNA AcHobo 1 178 0 200 294 165 12 chrX 19304854 19304939 -143294991 - L2 LINE L2 -20 3252 3155 29 0 0 0 chrX 19305255 19305284 -143294646 + AT_rich Low_complexity Low_complexity 1 29 0 449 254 189 6 chrX 19305391 19305560 -143294370 - MIR SINE MIR -13 249 50 1860 108 48 0 chrX 19305925 19306194 -143293736 - AluSx SINE Alu -30 282 1 22 56 0 0 chrX 19306201 19306237 -143293693 + AT_rich Low_complexity Low_complexity 1 36 0 255 170 0 0 chrX 19306567 19306614 -143293316 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2189 94 0 3 chrX 19306859 19307146 -143292784 - AluSg SINE Alu -24 286 1 26 50 0 0 chrX 19307656 19307696 -143292234 + AT_rich Low_complexity Low_complexity 1 40 0 361 0 0 0 chrX 19307718 19307758 -143292172 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1981 129 0 4 chrX 19307758 19308038 -143291892 - AluSg SINE Alu -1 318 1 22 35 0 0 chrX 19308365 19308394 -143291536 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chrX 19308431 19308454 -143291476 + (TA)n Simple_repeat Simple_repeat 2 24 0 3544 49 0 53 chrX 19308454 19308935 -143290995 - L1PA5 LINE L1 -8 6146 5690 23 0 0 0 chrX 19309041 19309064 -143290866 + AT_rich Low_complexity Low_complexity 1 23 0 261 303 174 32 chrX 19309581 19309736 -143290194 - MIR3 SINE MIR -11 197 21 2146 175 101 93 chrX 19309951 19310598 -143289332 - MLT1E1 LTR MaLR 0 654 3 606 242 124 17 chrX 19310704 19310882 -143289048 + MIR SINE MIR 2 198 -64 * 1106 253 12 4 chrX 19310875 19311128 -143288802 - MIR SINE MIR 0 262 8 688 223 81 14 chrX 19311845 19312071 -143287859 + LTR41 LTR ERVL 1 259 -536 324 204 48 39 chrX 19312423 19312526 -143287404 + LTR41 LTR ERVL 655 758 -15 2379 164 40 49 chrX 19312584 19313139 -143286791 + L1PB4 LINE L1 5601 6150 -6 229 345 12 24 chrX 19313328 19313412 -143286518 - MIR3 SINE MIR -123 85 3 203 173 19 39 chrX 19314607 19314659 -143285271 + A-rich Low_complexity Low_complexity 4 54 0 1208 115 139 10 chrX 19316060 19316269 -143283661 + MER46A DNA MER2_type 1 236 0 1528 116 4 24 chrX 19316713 19316964 -143282966 - L1MA3 LINE L1 -13 6292 6047 491 330 91 41 chrX 19317476 19317794 -143282136 + LTR16C LTR ERVL 156 489 -2 2458 59 0 10 chrX 19318001 19318304 -143281626 + AluY SINE Alu 1 300 -11 318 264 132 52 chrX 19318404 19318578 -143281352 - MIR SINE MIR -64 198 11 42 48 0 0 chrX 19319023 19319086 -143280844 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chrX 19319188 19319212 -143280718 + AT_rich Low_complexity Low_complexity 1 24 0 180 316 13 13 chrX 19320082 19320158 -143279772 + MIR SINE MIR 180 255 -7 22 0 0 0 chrX 19320987 19321009 -143278921 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrX 19321331 19321373 -143278557 + AT_rich Low_complexity Low_complexity 1 42 0 319 288 72 46 chrX 19321955 19322108 -143277822 + MIR SINE MIR 106 262 0 2221 99 7 3 chrX 19322118 19322421 -143277509 - AluSp SINE Alu -9 304 1 24 0 0 0 chrX 19322457 19322481 -143277449 + AT_rich Low_complexity Low_complexity 1 24 0 820 234 68 112 chrX 19323294 19323717 -143276213 + L1MC4 LINE L1 6645 7038 -957 23 54 0 0 chrX 19323756 19323793 -143276137 + AT_rich Low_complexity Low_complexity 1 37 0 33 25 0 0 chrX 19324030 19324070 -143275860 + AT_rich Low_complexity Low_complexity 1 40 0 37 81 0 0 chrX 19324341 19324427 -143275503 + AT_rich Low_complexity Low_complexity 1 86 0 263 300 118 64 chrX 19324691 19324801 -143275129 - MER5A DNA MER1_type -1 188 73 2292 114 0 0 chrX 19325165 19325471 -143274459 + AluSx SINE Alu 1 306 -6 225 261 0 0 chrX 19326630 19326676 -143273254 + polypyrimidine Low_complexity Low_complexity 3 48 0 4519 193 17 20 chrX 19327550 19328440 -143271490 + L1MA2 LINE L1 65 951 -6614 10506 145 22 13 chrX 19328443 19329044 -143270886 + L1MA2 LINE L1 4784 5378 -2345 2120 93 24 7 chrX 19329044 19329335 -143270595 + AluSc SINE Alu 1 296 -13 10506 145 22 13 chrX 19329335 19331638 -143268292 + L1MA2 LINE L1 5378 7717 -6 191 275 62 0 chrX 19331674 19331754 -143268176 - L2 LINE L2 -833 2481 2397 2205 108 0 7 chrX 19332726 19333031 -143266899 + AluSx SINE Alu 1 303 -9 1806 93 36 4 chrX 19333162 19333441 -143266489 + L1PA13 LINE L1 5875 6162 -1 920 185 38 52 chrX 19333691 19333902 -143266028 + MER3 DNA MER1_type 2 209 0 5938 146 17 25 chrX 19334787 19335996 -143263934 + L1MA9 LINE L1 5111 6312 0 21 0 0 0 chrX 19336695 19336716 -143263214 + AT_rich Low_complexity Low_complexity 1 21 0 358 372 58 6 chrX 19337084 19337256 -143262674 + MIR SINE MIR 32 212 -50 420 316 93 0 chrX 19337483 19337622 -143262308 - L2 LINE L2 0 3272 3121 2248 118 120 5 chrX 19338016 19338399 -143261531 + MSTA LTR MaLR 2 428 0 210 333 34 41 chrX 19338476 19338623 -143261307 - L2 LINE L2 -452 2862 2717 603 0 0 0 chrX 19339229 19339296 -143260634 + (TAAAA)n Simple_repeat Simple_repeat 2 68 0 2126 99 0 11 chrX 19339658 19339940 -143259990 + AluSg SINE Alu 1 279 -31 210 37 0 0 chrX 19339956 19339983 -143259947 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4727 32 0 0 chrX 19340191 19340747 -143259183 - L1PA3 LINE L1 -3 6152 5597 185 62 0 31 chrX 19341962 19341994 -143257936 + (CA)n Simple_repeat Simple_repeat 1 31 0 1510 250 18 9 chrX 19342155 19342491 -143257439 + MLT1I LTR MaLR 71 409 0 2287 97 3 0 chrX 19342725 19343025 -143256905 - AluSx SINE Alu -11 301 1 309 87 0 0 chrX 19343294 19343340 -143256590 - MADE1 DNA Mariner 0 80 35 344 85 0 0 chrX 19343414 19343461 -143256469 - MADE1 DNA Mariner -33 47 1 189 287 38 96 chrX 19343836 19343993 -143255937 - MER5A DNA MER1_type -41 148 1 496 294 13 20 chrX 19344056 19344209 -143255721 - MER5B DNA MER1_type 0 178 27 229 244 39 51 chrX 19344500 19344578 -143255352 + MIR SINE MIR 107 183 -79 243 229 0 0 chrX 19344708 19344756 -143255174 + L1ME1 LINE L1 5594 5641 -529 358 226 46 56 chrX 19344781 19344982 -143254948 + L1ME1 LINE L1 5739 5951 -219 4786 127 17 1 chrX 19345985 19346742 -143253188 + L1MA5 LINE L1 5532 6300 0 415 304 123 26 chrX 19347438 19347665 -143252265 - MIR SINE MIR -12 250 2 22 70 0 0 chrX 19348094 19348137 -143251793 + AT_rich Low_complexity Low_complexity 1 43 0 208 26 26 53 chrX 19348869 19348907 -143251023 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2861 104 27 5 chrX 19348907 19349333 -143250597 - L1PA15 LINE L1 -26 6139 5706 313 204 62 93 chrX 19350516 19350678 -143249252 - L1ME4a LINE L1 -1 6120 5964 259 286 13 0 chrX 19350890 19350967 -143248963 + Charlie8 DNA MER1_type 2340 2417 0 1020 218 10 15 chrX 19351748 19351950 -143247980 - MIR SINE MIR 0 262 62 1072 225 131 74 chrX 19351982 19353139 -143246791 - L1M4 LINE L1 -2343 3803 2445 2023 103 28 7 chrX 19353649 19353940 -143245990 + MER7A DNA MER2_type 1 295 -51 383 239 8 31 chrX 19354178 19354308 -143245622 + L1ME1 LINE L1 6037 6163 -3 2052 80 8 0 chrX 19354365 19354628 -143245302 + AluSg SINE Alu 36 300 -10 207 0 0 0 chrX 19354806 19354829 -143245101 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chrX 19355329 19355352 -143244578 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 266 196 304 29 chrX 19357086 19357188 -143242742 + MIR SINE MIR 75 204 -58 21 36 0 0 chrX 19358040 19358068 -143241862 + AT_rich Low_complexity Low_complexity 1 28 0 378 0 0 0 chrX 19358352 19358394 -143241536 + (TG)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chrX 19358930 19358965 -143240965 + AT_rich Low_complexity Low_complexity 1 35 0 386 271 68 17 chrX 19359476 19359594 -143240336 - L2 LINE L2 -1 3271 3148 1853 166 7 0 chrX 19362125 19362426 -143237504 - AluJo SINE Alu -9 303 1 21 36 0 0 chrX 19363398 19363426 -143236504 + AT_rich Low_complexity Low_complexity 1 28 0 212 434 24 0 chrX 19363815 19363981 -143235949 - L2 LINE L2 -1 3271 3102 404 358 128 23 chrX 19363984 19364336 -143235594 + L2 LINE L2 2836 3224 -48 289 343 198 24 chrX 19366747 19366995 -143232935 - L2 LINE L2 -1368 1946 1656 218 304 0 0 chrX 19367298 19367354 -143232576 - L2 LINE L2 -36 3236 3181 905 168 7 0 chrX 19367371 19367520 -143232410 - MER2 DNA MER2_type -174 171 22 302 306 81 32 chrX 19367895 19368019 -143231911 - MIR SINE MIR -102 160 31 425 293 95 7 chrX 19368656 19368803 -143231127 - MIR SINE MIR -94 168 9 505 183 16 24 chrX 19369177 19369303 -143230627 - L1MA7 LINE L1 -10 6281 6157 998 205 2 3 chrX 19370322 19370552 -143229378 + L1MB3 LINE L1 5551 5779 -372 19297 158 32 70 chrX 19370556 19374196 -143225734 + L1MA2 LINE L1 16 3795 -3928 189 0 0 0 chrX 19374196 19374217 -143225713 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 19297 158 32 70 chrX 19374217 19376389 -143223541 + L1MA2 LINE L1 3795 6049 -1674 357 109 0 0 chrX 19376389 19376444 -143223486 + (TG)n Simple_repeat Simple_repeat 2 56 0 19297 158 32 70 chrX 19376444 19376475 -143223455 + L1MA2 LINE L1 6049 6080 -1643 1651 16 0 0 chrX 19376475 19376665 -143223265 - L1PA5 LINE L1 -12 6142 5953 19297 158 32 70 chrX 19376665 19378228 -143221702 + L1MA2 LINE L1 6080 7110 -613 566 113 9 26 chrX 19378246 19378361 -143221569 - L1 LINE L1 -1465 4681 4569 3534 94 54 35 chrX 19378361 19378951 -143220979 + L1MA2 LINE L1 7116 7723 0 1972 133 29 46 chrX 19378960 19379375 -143220555 + L1MB3 LINE L1 5774 6181 -2 358 96 0 68 chrX 19379375 19379429 -143220501 + L1MB4 LINE L1 6112 6179 -1 475 313 97 57 chrX 19380300 19380725 -143219205 - L2 LINE L2 0 3313 2872 294 50 0 0 chrX 19381345 19381385 -143218545 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chrX 19381444 19381471 -143218459 + (CA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chrX 19381909 19381938 -143217992 + AT_rich Low_complexity Low_complexity 1 29 0 300 274 230 0 chrX 19381976 19382089 -143217841 - MER5A DNA MER1_type 0 189 51 318 26 0 0 chrX 19382196 19382235 -143217695 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 191 0 0 chrX 19383299 19383346 -143216584 + (TA)n Simple_repeat Simple_repeat 1 47 0 189 0 0 0 chrX 19383957 19383978 -143215952 + (GAGTG)n Simple_repeat Simple_repeat 3 23 0 1883 174 9 9 chrX 19386225 19386559 -143213371 - MER1B DNA MER1_type 0 337 4 36 23 0 0 chrX 19386709 19386752 -143213178 + AT_rich Low_complexity Low_complexity 1 43 0 737 280 70 36 chrX 19387010 19387599 -143212331 + L1M4 LINE L1 4233 4841 -1305 371 359 36 42 chrX 19387635 19387758 -143212172 + L1M4 LINE L1 4853 4975 -1171 2170 128 0 0 chrX 19387758 19388064 -143211866 - AluSq SINE Alu -7 306 1 371 359 36 42 chrX 19388064 19388274 -143211656 + L1M4 LINE L1 4975 5184 -962 419 289 35 18 chrX 19388649 19388763 -143211167 + L2 LINE L2 3197 3312 -1 229 271 0 0 chrX 19388769 19388817 -143211113 + L2 LINE L2 3265 3312 -1 1876 101 236 19 chrX 19388851 19389219 -143210711 - L1PA16 LINE L1 0 6166 5719 * 3263 182 37 3 chrX 19389218 19389898 -143210032 - L1 LINE L1 -1306 4840 4138 228 303 79 13 chrX 19390072 19390148 -143209782 + L2 LINE L2 3208 3288 -25 450 36 0 0 chrX 19390881 19390937 -143208993 + (CTG)n Simple_repeat Simple_repeat 1 56 0 314 211 105 76 chrX 19391080 19391251 -143208679 - LTR40a LTR ERVL -42 477 302 * 849 262 78 29 chrX 19391111 19391576 -143208354 - REP3 LTR ERV -47 515 1 712 313 189 45 chrX 19391933 19392720 -143207210 + L2 LINE L2 1932 2832 -482 22 0 0 0 chrX 19394855 19394877 -143205053 + AT_rich Low_complexity Low_complexity 1 22 0 454 321 11 0 chrX 19396895 19397079 -143202851 - L1M4 LINE L1 -1250 4896 4711 26 30 0 0 chrX 19397240 19397273 -143202657 + AT_rich Low_complexity Low_complexity 1 33 0 30 59 0 0 chrX 19397523 19397574 -143202356 + AT_rich Low_complexity Low_complexity 1 51 0 229 291 241 22 chrX 19397851 19398059 -143201871 + MIR SINE MIR 10 262 0 231 216 98 0 chrX 19399357 19399408 -143200522 - L2 LINE L2 0 3313 3258 713 319 39 12 chrX 19399861 19400115 -143199815 - MIR SINE MIR 0 262 2 2508 83 18 33 chrX 19401991 19402389 -143197541 - L1MA5 LINE L1 -5 6295 5904 277 362 19 0 chrX 19403066 19403171 -143196759 + MIR3 SINE MIR 62 168 -40 4282 161 52 32 chrX 19403365 19403566 -143196364 + L1MC2 LINE L1 5060 5255 -1089 1884 121 32 3 chrX 19403566 19403887 -143196043 + AluSx SINE Alu 1 312 0 4282 161 52 32 chrX 19403887 19403939 -143195991 + L1MC2 LINE L1 5255 5304 -1040 1778 170 10 6 chrX 19403939 19404250 -143195680 + AluSx SINE Alu 1 312 0 4282 161 52 32 chrX 19404250 19404996 -143194934 + L1MC2 LINE L1 5304 6079 -265 960 215 62 29 chrX 19404999 19405472 -143194458 + L1MC/D LINE L1 4986 5478 -743 340 273 62 12 chrX 19405469 19405630 -143194300 + L1M4 LINE L1 3283 3451 -2695 * 2820 235 45 28 chrX 19405640 19406498 -143193432 + L1M4 LINE L1 3612 4484 -1662 2124 127 41 36 chrX 19406506 19406868 -143193062 + THE1B LTR MaLR 1 364 0 11313 98 11 1 chrX 19406868 19408431 -143191499 + THE1B-int LTR MaLR 1 1580 0 1139 199 14 9 chrX 19408431 19408642 -143191288 + THE1B LTR MaLR 1 212 -163 483 349 198 8 chrX 19408667 19409031 -143190899 + L2 LINE L2 2839 3271 -1 250 304 39 0 chrX 19410786 19410888 -143189042 - LTR33A LTR ERVL 0 523 418 1613 304 99 17 chrX 19410981 19411689 -143188241 - ERVL LTR ERVL -342 5422 4657 892 236 15 0 chrX 19411738 19411937 -143187993 - MLT1E2 LTR MaLR -2 624 423 1530 17 6 0 chrX 19411939 19412117 -143187813 - L1PA3 LINE L1 0 6155 5977 1613 6 0 0 chrX 19412117 19412297 -143187633 + L1P1 LINE L1 5417 5596 -559 1104 244 90 24 chrX 19412297 19412730 -143187200 - MLT1E2 LTR MaLR -174 450 1 1420 232 54 12 chrX 19412731 19413063 -143186867 - ERVL LTR ERVL -1335 4429 4084 1188 264 17 17 chrX 19413090 19413435 -143186495 - ERVL LTR ERVL -1711 3943 3599 2223 267 98 19 chrX 19413466 19414110 -143185820 - ERVL LTR ERVL -2190 3574 2880 2122 151 48 32 chrX 19414255 19414752 -143185178 - MLT2A2 LTR ERVL 0 515 1 233 293 146 0 chrX 19414790 19414872 -143185058 - LTR50 LTR ERVL -694 101 8 928 301 85 19 chrX 19415332 19415708 -143184222 - MLT1I LTR MaLR -5 404 4 233 226 71 84 chrX 19416679 19416891 -143183039 - MIR SINE MIR -18 244 45 28 0 0 0 chrX 19417068 19417096 -143182834 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chrX 19417167 19417199 -143182731 + AT_rich Low_complexity Low_complexity 1 32 0 335 274 35 0 chrX 19418960 19419073 -143180857 + L1ME3A LINE L1 5749 5865 -305 520 210 102 27 chrX 19419290 19419476 -143180454 + LTR33A LTR ERVL 324 523 0 1093 236 55 31 chrX 19419532 19419948 -143179982 - HsTC2 DNA Tc2 -4 1894 1469 507 274 61 0 chrX 19420046 19420210 -143179720 - HsTC2 DNA Tc2 -453 1445 1272 383 333 14 0 chrX 19420214 19420355 -143179575 - HsTC2 DNA Tc2 -1751 147 5 694 261 66 40 chrX 19420380 19420606 -143179324 - L1MEd LINE L1 -5447 672 441 243 0 0 0 chrX 19421040 19421067 -143178863 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 230 266 0 43 chrX 19422216 19422310 -143177620 - L1MC4 LINE L1 -1339 6703 6614 290 299 0 11 chrX 19422310 19422397 -143177533 + (CATATA)n Simple_repeat Simple_repeat 2 87 0 1024 221 54 0 chrX 19422874 19423096 -143176834 - HAL1 LINE L1 -690 1817 1584 224 235 0 20 chrX 19423592 19423643 -143176287 + GA-rich Low_complexity Low_complexity 1 50 0 2231 130 119 8 chrX 19426971 19427356 -143172574 + MSTA LTR MaLR 1 428 0 9086 176 20 2 chrX 19427357 19428978 -143170952 + MSTA-int LTR MaLR 2 1651 0 2365 101 119 13 chrX 19428978 19429365 -143170565 + MSTA LTR MaLR 1 428 0 243 308 247 7 chrX 19429917 19430063 -143169867 + MER20B DNA MER1_type 14 194 -589 3146 156 125 114 chrX 19430188 19430654 -143169276 - L1MC3 LINE L1 -12 7773 7314 317 82 20 0 chrX 19430654 19430703 -143169227 + (CATAT)n Simple_repeat Simple_repeat 4 53 0 3146 156 125 114 chrX 19430703 19430803 -143169127 - L1MC3 LINE L1 -471 7314 7217 377 265 0 1 chrX 19430803 19430900 -143169030 - MLT1F1 LTR MaLR -443 124 38 3146 156 125 114 chrX 19430900 19431249 -143168681 - L1MC3 LINE L1 -568 7217 6750 2461 64 0 0 chrX 19431459 19431754 -143168176 + AluY SINE Alu 1 295 -16 592 162 162 6 chrX 19431776 19431949 -143167981 + MER20B DNA MER1_type 545 744 -39 307 204 146 22 chrX 19431994 19432131 -143167799 + L1MC5 LINE L1 7535 7688 -273 1966 169 0 0 chrX 19432150 19432458 -143167472 - AluJb SINE Alu -4 308 1 216 0 0 0 chrX 19433615 19433639 -143166291 + (T)n Simple_repeat Simple_repeat 1 24 0 486 289 54 0 chrX 19434064 19434213 -143165717 + MIR SINE MIR 106 262 0 475 306 44 63 chrX 19434268 19434520 -143165410 - MIR SINE MIR -11 251 5 215 309 143 32 chrX 19434672 19434798 -143165132 + MIR SINE MIR 71 210 -52 25 75 0 0 chrX 19436396 19436449 -143163481 + AT_rich Low_complexity Low_complexity 1 53 0 414 297 179 26 chrX 19437578 19437918 -143162012 - L2 LINE L2 0 3313 2922 349 333 39 0 chrX 19437979 19438081 -143161849 - L2 LINE L2 -484 2830 2725 2345 106 0 3 chrX 19438910 19439221 -143160709 + AluSx SINE Alu 1 310 -2 30 27 0 0 chrX 19441414 19441451 -143158479 + AT_rich Low_complexity Low_complexity 1 37 0 218 240 13 80 chrX 19442862 19442937 -143156993 + L2 LINE L2 3184 3253 -19 223 260 0 27 chrX 19443008 19443081 -143156849 + GA-rich Low_complexity Low_complexity 5 75 0 342 0 0 0 chrX 19444740 19444778 -143155152 + (CTG)n Simple_repeat Simple_repeat 3 40 0 338 292 117 95 chrX 19445026 19445677 -143154253 - L1M2 LINE L1 -5701 1148 484 348 188 0 0 chrX 19446601 19446670 -143153260 + (TA)n Simple_repeat Simple_repeat 1 69 0 328 289 0 11 chrX 19446673 19446763 -143153167 + L1MC4 LINE L1 6615 6703 -1339 195 129 0 0 chrX 19446764 19446795 -143153135 + (TATG)n Simple_repeat Simple_repeat 4 34 0 315 272 0 8 chrX 19446795 19446918 -143153012 + L1MC4 LINE L1 1995 6983 -1339 * 330 284 23 0 chrX 19446897 19446985 -143152945 + L1MC4 LINE L1 6894 6983 -1339 317 302 57 0 chrX 19446919 19447025 -143152905 - L1MC4 LINE L1 -1339 6703 6592 * 197 190 410 10 chrX 19447083 19447183 -143152747 - MIR SINE MIR 0 262 123 1864 114 0 0 chrX 19647230 19647484 -142952446 + AluSx SINE Alu 59 312 0 1423 191 15 29 chrX 19647493 19647799 -142952131 + AluJo SINE Alu 14 315 0 25 51 0 0 chrX 19647799 19647838 -142952092 + AT_rich Low_complexity Low_complexity 1 39 0 794 279 126 38 chrX 19648420 19648889 -142951041 + MLT1J LTR MaLR 2 511 0 206 289 0 0 chrX 19649426 19649478 -142950452 + CT-rich Low_complexity Low_complexity 2 53 0 1867 120 53 14 chrX 19649600 19649883 -142950047 - AluJb SINE Alu -18 294 1 297 320 20 0 chrX 19649976 19650076 -142949854 + L2 LINE L2 2929 3030 -242 1885 163 0 3 chrX 19650095 19650402 -142949528 + AluJo SINE Alu 1 306 -6 816 171 6 11 chrX 19650421 19650597 -142949333 + GA-rich Low_complexity Low_complexity 4 178 0 480 211 15 8 chrX 19650610 19650743 -142949187 + GA-rich Low_complexity Low_complexity 1 134 0 2823 16 0 0 chrX 19650840 19651144 -142948786 + AluY SINE Alu 1 304 -7 686 187 122 0 chrX 19651298 19651437 -142948493 - FAM SINE Alu -19 156 1 1643 203 107 24 chrX 19651708 19652177 -142947753 - Charlie4a DNA MER1_type 0 508 1 660 214 47 93 chrX 19652643 19652900 -142947030 + MER112 DNA MER1_type 7 251 -9 213 229 21 0 chrX 19652900 19652948 -142946982 + L3 LINE CR1 1523 1571 -6 22 0 0 0 chrX 19652997 19653019 -142946911 + AT_rich Low_complexity Low_complexity 1 22 0 931 202 77 114 chrX 19653024 19653175 -142946755 - L1MC4 LINE L1 0 8042 7887 2233 100 0 0 chrX 19653175 19653456 -142946474 - AluSx SINE Alu -29 283 3 931 202 77 114 chrX 19653456 19653770 -142946160 - L1MC4 LINE L1 -155 7887 7594 7550 185 151 13 chrX 19653780 19654136 -142945794 - L1PB1 LINE L1 -2 6149 5843 420 20 0 0 chrX 19654136 19654185 -142945745 + (TA)n Simple_repeat Simple_repeat 2 50 0 7550 185 151 13 chrX 19654185 19655118 -142944812 - L1PB1 LINE L1 -308 5843 5040 2144 116 0 7 chrX 19655118 19655410 -142944520 + AluSx SINE Alu 1 290 -22 7550 185 151 13 chrX 19655410 19657500 -142942430 - L1PB1 LINE L1 -1111 5040 2277 322 197 244 16 chrX 19657503 19657630 -142942300 + MLT1F LTR MaLR 321 476 -66 6591 192 109 41 chrX 19657644 19659360 -142940570 - L1MC4 LINE L1 -2 8040 6208 225 204 204 0 chrX 19659360 19659409 -142940521 + MLT1F LTR MaLR 491 549 -6 309 261 97 23 chrX 19659416 19659566 -142940364 - L1MC4a LINE L1 -455 7353 7248 364 180 11 11 chrX 19659855 19659944 -142939986 + GA-rich Low_complexity Low_complexity 4 92 0 1042 88 6 28 chrX 19659946 19660128 -142939802 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 194 167 167 0 chrX 19660387 19660429 -142939501 + L2 LINE L2 3232 3280 -33 2033 149 3 3 chrX 19660447 19660749 -142939181 - AluJo SINE Alu -10 302 1 237 279 93 0 chrX 19660798 19660884 -142939046 - L2 LINE L2 -29 3243 3150 23 0 0 0 chrX 19660898 19660921 -142939009 + AT_rich Low_complexity Low_complexity 1 23 0 185 32 0 65 chrX 19661149 19661165 -142938765 + (CAT)n Simple_repeat Simple_repeat 2 17 -13 2653 34 0 0 chrX 19661165 19661462 -142938468 - AluY SINE Alu -14 297 1 185 32 0 65 chrX 19661462 19661476 -142938454 + (CAT)n Simple_repeat Simple_repeat 17 30 0 246 290 100 30 chrX 19661686 19661917 -142938013 - L1ME4a LINE L1 -76 6045 5799 261 291 17 81 chrX 19662067 19662160 -142937770 - LTR37B LTR ERV1 -270 198 101 12106 147 59 35 chrX 19662160 19662413 -142937517 + Charlie5 DNA MER1_type 1 247 -2377 2448 84 0 0 chrX 19662413 19662709 -142937221 + AluSx SINE Alu 1 296 -16 12106 147 59 35 chrX 19662709 19664934 -142934996 + Charlie5 DNA MER1_type 247 2544 -80 2427 109 0 0 chrX 19664934 19665245 -142934685 - AluSx SINE Alu -1 311 1 12106 147 59 35 chrX 19665245 19665328 -142934602 + Charlie5 DNA MER1_type 2544 2624 0 261 291 17 81 chrX 19665328 19665406 -142934524 - LTR37B LTR ERV1 -367 101 38 2419 64 0 7 chrX 19665482 19665778 -142934152 + AluSg SINE Alu 1 294 -16 289 317 117 70 chrX 19665835 19666487 -142933443 - L2 LINE L2 -456 2858 2157 711 201 92 12 chrX 19666487 19666651 -142933279 + MER5B DNA MER1_type 2 178 0 289 317 117 70 chrX 19666651 19666825 -142933105 - L2 LINE L2 -1157 2157 1993 405 0 0 0 chrX 19666917 19666962 -142932968 + (CA)n Simple_repeat Simple_repeat 2 46 0 2745 189 38 49 chrX 19667794 19668475 -142931455 - L1MD3 LINE L1 0 8041 7381 297 167 0 0 chrX 19668825 19668879 -142931051 + (TA)n Simple_repeat Simple_repeat 2 55 0 1674 156 52 0 chrX 19668882 19669152 -142930778 - AluJo SINE Alu -28 284 1 315 266 126 53 chrX 19669658 19669865 -142930065 + MIR SINE MIR 26 247 -15 197 273 0 18 chrX 19669901 19669956 -142929974 + MIR3 SINE MIR 10 63 -145 2231 114 7 3 chrX 19670397 19670705 -142929225 + AluSx SINE Alu 1 309 -3 619 237 19 79 chrX 19670778 19670993 -142928937 - MIR SINE MIR -13 249 48 467 226 155 0 chrX 19671197 19671352 -142928578 + MIR SINE MIR 16 194 -68 2052 139 7 7 chrX 19671517 19671826 -142928104 + AluJo SINE Alu 3 311 -1 3781 142 66 41 chrX 19672198 19672924 -142927006 - L1MB5 LINE L1 0 6174 5431 609 201 104 18 chrX 19672945 19672982 -142926948 + MER5B DNA MER1_type 1 33 -145 306 0 0 0 chrX 19672982 19673016 -142926914 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 609 201 104 18 chrX 19673016 19673142 -142926788 + MER5B DNA MER1_type 33 178 0 2295 108 3 0 chrX 19673173 19673478 -142926452 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 19673696 19673724 -142926206 + AT_rich Low_complexity Low_complexity 1 28 0 219 69 0 0 chrX 19673888 19673917 -142926013 + (CCA)n Simple_repeat Simple_repeat 2 30 0 536 217 11 94 chrX 19674181 19674361 -142925569 - MER90 LTR ERV1 0 614 450 * 1674 153 254 8 chrX 19674352 19674718 -142925212 + LTR32 LTR ERVL 16 471 0 2022 171 14 37 chrX 19674719 19675147 -142924783 - MER90 LTR ERV1 -157 418 1 277 294 96 7 chrX 19675315 19675461 -142924469 - MER90-int LTR ERV1 -162 6639 6481 2036 147 7 0 chrX 19675663 19675963 -142923967 - AluSx SINE Alu -10 302 1 732 172 39 0 chrX 19676148 19676276 -142923654 - MER45A DNA AcHobo -4 174 42 27 49 0 0 chrX 19677534 19677575 -142922355 + GC_rich Low_complexity Low_complexity 1 41 0 22 94 0 0 chrX 19677783 19677847 -142922083 + GC_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chrX 19677853 19677876 -142922054 + GC_rich Low_complexity Low_complexity 1 23 0 2788 35 0 0 chrX 19678482 19678792 -142921138 + AluSg SINE Alu 1 310 0 222 296 99 33 chrX 19679174 19679326 -142920604 + MIR SINE MIR 15 176 -86 2147 112 0 29 chrX 19679707 19680019 -142919911 - AluSx SINE Alu -4 308 6 1151 149 128 78 chrX 19681291 19681572 -142918358 + AluJb SINE Alu 1 295 -7 2008 130 7 3 chrX 19681573 19681866 -142918064 + AluSx SINE Alu 1 294 -18 292 195 183 0 chrX 19682368 19682450 -142917480 - Charlie4a DNA MER1_type -2 506 410 2118 82 19 4 chrX 19682531 19682800 -142917130 - AluSg SINE Alu -37 273 1 863 211 131 11 chrX 19682801 19683076 -142916854 - Charlie4a DNA MER1_type -184 324 17 308 260 178 14 chrX 19683281 19683427 -142916503 - MIR SINE MIR -44 218 49 699 159 220 16 chrX 19683487 19683669 -142916261 + MER20 DNA MER1_type 1 219 0 243 296 42 49 chrX 19684183 19684325 -142915605 + MER5A DNA MER1_type 48 188 -1 936 170 180 0 chrX 19686691 19686891 -142913039 + MER46A DNA MER2_type 1 236 0 621 259 0 0 chrX 19686944 19687079 -142912851 - FLAM_A SINE Alu -7 135 1 6887 67 17 8 chrX 19687314 19688608 -142911322 - L1PA8 LINE L1 0 6172 4864 428 215 11 21 chrX 19688901 19688994 -142910936 + MIR SINE MIR 19 110 -152 2330 207 91 30 chrX 19688997 19689284 -142910646 - L1M4 LINE L1 -1995 4151 3883 180 97 0 0 chrX 19689284 19689315 -142910615 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2330 207 91 30 chrX 19689315 19689627 -142910303 - L1M4 LINE L1 -2263 3883 3502 1527 179 0 64 chrX 19689627 19689940 -142909990 - AluJb SINE Alu -19 293 1 2330 207 91 30 chrX 19689940 19690029 -142909901 - L1M4 LINE L1 -2644 3502 3420 3429 85 23 13 chrX 19690044 19690516 -142909414 - LTR15 LTR ERV1 -16 477 1 652 246 111 14 chrX 19690518 19690868 -142909062 - L1M4 LINE L1 -2724 3422 3039 577 264 112 11 chrX 19691080 19691258 -142908672 + MER58C DNA MER1_type 20 215 0 2009 128 10 0 chrX 19691725 19692013 -142907917 - AluSx SINE Alu -21 291 1 1686 125 53 15 chrX 19693186 19693334 -142906596 - AluJb SINE Alu -38 274 110 2477 78 0 3 chrX 19693334 19693643 -142906287 - AluSg SINE Alu 0 310 3 1686 125 53 15 chrX 19693643 19693758 -142906172 - AluJb SINE Alu -202 110 1 453 243 120 2 chrX 19694061 19694169 -142905761 - MLT1E1 LTR MaLR 0 654 560 1972 133 37 0 chrX 19694169 19694463 -142905467 - AluSx SINE Alu -7 305 1 2795 121 29 33 chrX 19694474 19695224 -142904706 - L1P5 LINE L1 -480 5671 4925 1115 183 25 29 chrX 19695319 19695560 -142904370 - L1MB7 LINE L1 -10 6174 5935 1235 112 0 0 chrX 19695560 19695721 -142904209 - AluSp SINE Alu -19 294 134 891 169 174 29 chrX 19695721 19695963 -142903967 - L1MB7 LINE L1 -234 5950 5674 410 97 187 18 chrX 19696405 19696504 -142903426 - L1ME1 LINE L1 -13 6153 6048 225 0 0 0 chrX 19697912 19697937 -142901993 + (T)n Simple_repeat Simple_repeat 1 25 0 693 173 58 0 chrX 19699396 19699535 -142900395 - MER5B DNA MER1_type -1 177 31 1859 164 11 0 chrX 19699546 19699832 -142900098 - AluJb SINE Alu -23 289 1 21 0 0 0 chrX 19699934 19699955 -142899975 + AT_rich Low_complexity Low_complexity 1 21 0 269 296 34 0 chrX 19700686 19700774 -142899156 - Charlie8 DNA MER1_type -313 2104 2014 986 211 4 60 chrX 19700882 19701114 -142898816 - Charlie8 DNA MER1_type -588 1829 1611 1262 242 116 34 chrX 19701696 19702163 -142897767 - MLT1D LTR MaLR 0 505 1 276 186 85 0 chrX 19702173 19702232 -142897698 - Charlie8 DNA MER1_type -2293 124 61 975 149 0 14 chrX 19702232 19702380 -142897550 + AluJb SINE Alu 1 146 -166 1899 82 4 34 chrX 19702380 19702649 -142897281 + AluY SINE Alu 45 305 -6 1161 152 6 0 chrX 19702669 19702847 -142897083 + AluJb SINE Alu 118 296 -16 438 20 0 0 chrX 19703934 19703985 -142895945 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 223 132 0 0 chrX 19704326 19704364 -142895566 + MER5B DNA MER1_type 3 40 -138 558 205 14 53 chrX 19704368 19704522 -142895408 - LTR35 LTR ERV1 -1 677 497 248 210 210 17 chrX 19705198 19705317 -142894613 - MER5B DNA MER1_type -36 142 1 412 203 23 39 chrX 19705354 19705482 -142894448 - MER5A DNA MER1_type -63 126 1 785 128 0 0 chrX 19705687 19705804 -142894126 + L1PB1 LINE L1 6033 6149 -2 214 290 167 0 chrX 19706077 19706215 -142893715 + L2 LINE L2 2216 2376 -938 1974 146 10 0 chrX 19706687 19706989 -142892941 - AluSx SINE Alu -7 305 1 1168 132 0 21 chrX 19707438 19707628 -142892302 - AluJb SINE Alu -7 305 120 2262 98 3 7 chrX 19707792 19708088 -142891842 + AluSx SINE Alu 1 295 -17 365 196 62 52 chrX 19708217 19708314 -142891616 - MER58 DNA MER1_type -109 106 9 2049 127 6 32 chrX 19709504 19709818 -142890112 + AluSx SINE Alu 1 306 -6 1631 102 4 4 chrX 19710106 19710331 -142889599 + AluSg/x SINE Alu 76 300 -12 518 224 267 0 chrX 19710571 19710732 -142889198 - MER3 DNA MER1_type -5 204 1 180 0 0 0 chrX 19711734 19711754 -142888176 + (T)n Simple_repeat Simple_repeat 1 20 0 1199 259 132 41 chrX 19713019 19713626 -142886304 + L1MC4 LINE L1 7143 7804 -238 571 246 45 17 chrX 19714387 19714566 -142885364 - L1MC5 LINE L1 -47 7914 7731 2134 119 7 3 chrX 19715170 19715464 -142884466 + AluSx SINE Alu 1 295 -17 5590 73 1 0 chrX 19716064 19716779 -142883151 - L1PA8 LINE L1 0 6172 5457 272 89 44 0 chrX 19716779 19716824 -142883106 + Alu SINE Alu 249 295 -5 24 53 0 0 chrX 19716826 19716864 -142883066 + AT_rich Low_complexity Low_complexity 1 38 0 238 317 149 0 chrX 19716915 19717123 -142882807 + L1ME LINE L1 3719 3957 -2189 1252 102 12 0 chrX 19717141 19717307 -142882623 + AluSg/x SINE Alu 130 297 -15 216 0 0 0 chrX 19717307 19717331 -142882599 + (TA)n Simple_repeat Simple_repeat 2 25 0 340 118 0 0 chrX 19717333 19717384 -142882546 + L1PA16 LINE L1 6106 6156 -10 346 275 121 45 chrX 19717788 19717918 -142882012 + L1ME LINE L1 4408 4527 -1619 2262 93 10 0 chrX 19717918 19718208 -142881722 + AluSx SINE Alu 1 293 -19 346 275 121 45 chrX 19718208 19718408 -142881522 + L1ME LINE L1 4527 4763 -1383 2528 49 3 16 chrX 19718929 19719234 -142880696 + AluY SINE Alu 1 301 -10 250 300 0 0 chrX 19719304 19719394 -142880536 + L1ME LINE L1 5467 5556 -565 1714 164 0 26 chrX 19719913 19720218 -142879712 - AluJb SINE Alu -15 297 1 21 71 0 0 chrX 19720248 19720290 -142879640 + AT_rich Low_complexity Low_complexity 1 42 0 869 145 0 0 chrX 19720618 19720742 -142879188 + FLAM_C SINE Alu 1 124 -19 35 24 0 0 chrX 19720743 19720785 -142879145 + AT_rich Low_complexity Low_complexity 1 42 0 248 241 98 9 chrX 19720876 19720988 -142878942 + MIR SINE MIR 87 208 -54 1301 166 15 5 chrX 19722702 19722907 -142877023 + AluJb SINE Alu 85 291 -21 2451 84 7 3 chrX 19722944 19723253 -142876677 + AluSx SINE Alu 1 310 -2 889 180 130 10 chrX 19723599 19723799 -142876131 + MER58A DNA MER1_type 1 224 0 2490 70 0 3 chrX 19723873 19724174 -142875756 - AluSp SINE Alu -13 300 1 1304 248 35 0 chrX 19724208 19724498 -142875432 - AluJb SINE Alu -10 302 3 2577 58 7 0 chrX 19725261 19725570 -142874360 + AluY SINE Alu 1 311 0 603 159 115 9 chrX 19726054 19726167 -142873763 + FLAM_A SINE Alu 10 134 -8 1950 140 3 19 chrX 19726612 19726919 -142873011 - AluSx SINE Alu -10 302 1 416 191 29 156 chrX 19726935 19727031 -142872899 + LTR45B LTR ERV1 324 390 -99 891 192 0 0 chrX 19727031 19727187 -142872743 + FRAM SINE Alu 1 156 -10 416 191 29 156 chrX 19727187 19727263 -142872667 + LTR45B LTR ERV1 390 474 -15 2247 98 0 3 chrX 19728059 19728355 -142871575 - AluSq SINE Alu -17 296 2 405 231 141 19 chrX 19728685 19728841 -142871089 - MLT1L LTR MaLR -221 394 220 324 227 11 45 chrX 19729710 19729798 -142870132 - MER5B DNA MER1_type -3 175 91 583 163 73 45 chrX 19729858 19730036 -142869894 + MER5A DNA MER1_type 1 183 -6 279 239 12 42 chrX 19730723 19730890 -142869040 + CT-rich Low_complexity Low_complexity 4 165 0 31 0 0 0 chrX 19731341 19731372 -142868558 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chrX 19731523 19731544 -142868386 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 22 0 0 0 chrX 19732427 19732449 -142867481 + AT_rich Low_complexity Low_complexity 1 22 0 365 113 0 0 chrX 19732449 19732502 -142867428 - Alu SINE Alu -10 292 240 2277 113 6 3 chrX 19732553 19732864 -142867066 - AluSx SINE Alu 0 312 1 1941 132 10 10 chrX 19734228 19734517 -142865413 - AluSx SINE Alu -23 289 1 1213 198 108 10 chrX 19734854 19735294 -142864636 - Charlie4a DNA MER1_type 0 508 1 38915 84 8 8 chrX 19736321 19742463 -142857467 - L1PA6 LINE L1 0 6154 11 571 306 84 16 chrX 19743339 19743430 -142856500 + L1MC4 LINE L1 6962 7045 -997 2401 84 0 0 chrX 19743430 19743727 -142856203 + AluY SINE Alu 1 297 -14 571 306 84 16 chrX 19743727 19743958 -142855972 + L1MC4 LINE L1 7045 7306 -736 1005 210 46 18 chrX 19743959 19744365 -142855565 - MLT1D LTR MaLR 0 505 43 1053 237 119 29 chrX 19744424 19744834 -142855096 + L1MC4 LINE L1 7315 7761 -281 2386 84 0 7 chrX 19745615 19745913 -142854017 + AluSx SINE Alu 1 296 -16 502 212 182 36 chrX 19745939 19746104 -142853826 - MER5A DNA MER1_type 0 189 1 4231 131 72 8 chrX 19746322 19746590 -142853340 + L1MA4 LINE L1 4558 4807 -1493 2578 63 0 0 chrX 19746590 19746893 -142853037 + AluY SINE Alu 1 303 -8 4231 131 72 8 chrX 19746893 19747629 -142852301 + L1MA4 LINE L1 4807 5613 -687 264 160 0 32 chrX 19747629 19747723 -142852207 + (TA)n Simple_repeat Simple_repeat 2 92 0 806 139 139 0 chrX 19747728 19747893 -142852037 - L1MA4 LINE L1 -332 5968 5781 2964 163 93 0 chrX 19747933 19748533 -142851397 + L1MA4 LINE L1 5642 6297 -3 1744 144 112 90 chrX 19749437 19749894 -142850036 + MLT1C LTR MaLR 1 467 0 267 230 144 101 chrX 19749937 19750076 -142849854 - MLT1I LTR MaLR 0 409 288 1615 128 4 0 chrX 19750398 19750632 -142849298 + AluSg/x SINE Alu 65 299 -11 1809 107 107 11 chrX 19751141 19751155 -142848775 - AluSq SINE Alu -15 298 287 351 0 0 0 chrX 19751155 19751194 -142848736 + (TG)n Simple_repeat Simple_repeat 2 40 0 1809 107 107 11 chrX 19751194 19751451 -142848479 - AluSq SINE Alu -26 287 1 2382 87 0 3 chrX 19751553 19751852 -142848078 + AluSg SINE Alu 1 298 -12 1379 111 11 0 chrX 19752281 19752471 -142847459 + AluSq SINE Alu 1 192 -121 649 250 95 38 chrX 19753056 19753191 -142846739 - L1ME LINE L1 -567 5603 5477 1828 133 4 25 chrX 19753191 19753469 -142846461 + AluSx SINE Alu 2 273 -39 252 0 0 0 chrX 19753469 19753497 -142846433 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 649 250 95 38 chrX 19753497 19753937 -142845993 - L1ME LINE L1 -692 5478 4999 2329 104 3 0 chrX 19754468 19754777 -142845153 - AluSx SINE Alu -2 310 1 2027 144 0 3 chrX 19755064 19755356 -142844574 + AluJb SINE Alu 1 291 -21 854 229 114 54 chrX 19756244 19756816 -142843114 + MER115 DNA AcHobo 1 4031 0 354 156 0 0 chrX 19757571 19757635 -142842295 + C-rich Low_complexity Low_complexity 5 68 0 1754 139 0 4 chrX 19757635 19757880 -142842050 - AluSx SINE Alu -32 280 37 243 236 0 0 chrX 19757924 19757996 -142841934 + CT-rich Low_complexity Low_complexity 1 72 0 545 260 27 7 chrX 19758224 19758374 -142841556 - MIR SINE MIR -108 154 2 584 258 56 11 chrX 19758491 19758669 -142841261 - LTR33A LTR ERVL -21 502 317 438 243 91 77 chrX 19758868 19759054 -142840876 - LTR33A LTR ERVL -349 174 13 383 266 27 80 chrX 19759105 19759293 -142840637 - MER104 DNA MER2_type -2 178 1 312 341 60 44 chrX 19759396 19759501 -142840429 - L2 LINE L2 -213 3059 2957 2626 39 0 6 chrX 19759501 19759812 -142840118 - AluY SINE Alu -2 309 1 312 341 60 44 chrX 19759812 19759958 -142839972 - L2 LINE L2 -315 2957 2804 789 160 9 173 chrX 19760388 19760464 -142839466 + MER5A DNA MER1_type 1 88 -101 2363 103 0 0 chrX 19760464 19760776 -142839154 + AluSx SINE Alu 1 312 0 789 160 9 173 chrX 19760776 19760860 -142839070 + MER5A DNA MER1_type 88 116 -73 2088 133 0 0 chrX 19760860 19761146 -142838784 - AluJb SINE Alu -26 286 1 789 160 9 173 chrX 19761146 19761209 -142838721 + MER5A DNA MER1_type 116 188 -1 2257 200 46 49 chrX 19761446 19761900 -142838030 + MER74B LTR ERVL 56 509 -113 4833 156 13 13 chrX 19761900 19762726 -142837204 - LTR1B LTR ERV1 0 826 1 2257 200 46 49 chrX 19762726 19762840 -142837090 + MER74B LTR ERVL 509 622 0 359 283 113 13 chrX 19762840 19762999 -142836931 + MIR SINE MIR 35 209 -53 345 256 40 44 chrX 19763394 19763531 -142836399 + MIR SINE MIR 16 164 -63 213 125 104 0 chrX 19763689 19763737 -142836193 + CT-rich Low_complexity Low_complexity 1 53 0 1969 94 69 0 chrX 19764732 19765007 -142834923 - AluSc SINE Alu -15 294 1 975 230 0 63 chrX 19765037 19765210 -142834720 - MER58A DNA MER1_type -2196 224 69 2201 118 0 16 chrX 19765210 19765525 -142834405 + AluJb SINE Alu 1 310 -2 975 230 0 63 chrX 19765525 19765590 -142834340 - MER58A DNA MER1_type -2351 69 1 183 80 0 0 chrX 19765654 19765679 -142834251 + (T)n Simple_repeat Simple_repeat 1 25 0 1328 90 5 0 chrX 19765989 19766178 -142833752 - L1MA2 LINE L1 0 6304 6115 1767 96 0 32 chrX 19766861 19767146 -142832784 - AluSx SINE Alu 0 320 44 2026 145 0 3 chrX 19767151 19767441 -142832489 - AluSx SINE Alu -23 289 1 221 0 0 33 chrX 19767453 19767483 -142832447 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2154 89 7 0 chrX 19767492 19767763 -142832167 - AluSg SINE Alu -37 273 1 2047 130 3 7 chrX 19768573 19768880 -142831050 - AluSx SINE Alu -6 306 1 436 344 73 13 chrX 19771232 19771534 -142828396 - MARNA DNA Mariner -117 469 150 411 224 301 0 chrX 19771574 19771717 -142828213 + MER5A DNA MER1_type 4 189 0 1789 180 27 15 chrX 19772216 19772549 -142827381 - MER58B DNA MER1_type -4 337 1 25 0 0 0 chrX 19772698 19772723 -142827207 + AT_rich Low_complexity Low_complexity 1 25 0 291 54 0 0 chrX 19772875 19772912 -142827018 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chrX 19772912 19772932 -142826998 + (TA)n Simple_repeat Simple_repeat 1 20 0 2530 73 0 0 chrX 19772932 19773235 -142826695 - AluSx SINE Alu -9 303 1 22 56 0 0 chrX 19773586 19773622 -142826308 + AT_rich Low_complexity Low_complexity 1 36 0 2481 57 0 10 chrX 19773691 19773991 -142825939 + AluY SINE Alu 1 297 -14 231 304 15 70 chrX 19774890 19774916 -142825014 - MIR3 SINE MIR -30 178 152 760 156 101 45 chrX 19774916 19775095 -142824835 - MER5A DNA MER1_type 0 189 1 231 304 15 70 chrX 19775095 19775196 -142824734 - MIR3 SINE MIR -56 152 55 2072 99 34 17 chrX 19775851 19776143 -142823787 - AluSx SINE Alu -15 297 1 2322 144 68 23 chrX 19776264 19776659 -142823271 - LTR42 LTR ERVL 0 495 83 1178 145 0 0 chrX 19776659 19776831 -142823099 + AluSg/x SINE Alu 132 303 -9 359 168 0 119 chrX 19776831 19776932 -142822998 - LTR42 LTR ERVL -402 93 5 232 279 199 48 chrX 19777119 19777235 -142822695 - L2 LINE L2 -8 3305 3208 602 186 93 0 chrX 19777235 19777353 -142822577 + FLAM_A SINE Alu 2 130 -3 232 279 199 48 chrX 19777353 19778033 -142821897 - L2 LINE L2 -105 3208 2377 207 0 0 0 chrX 19778115 19778138 -142821792 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 243 0 0 0 chrX 19778137 19778164 -142821766 + (TA)n Simple_repeat Simple_repeat 2 28 0 564 295 29 0 chrX 19778169 19778373 -142821557 - MIR SINE MIR -36 226 18 365 327 39 0 chrX 19779205 19779361 -142820569 + MIR SINE MIR 37 198 -64 1896 121 0 95 chrX 19779364 19779702 -142820228 + AluSx SINE Alu 1 306 -6 984 260 12 8 chrX 19779804 19780058 -142819872 + MER46C DNA MER2_type 80 334 -4 515 210 54 65 chrX 19780064 19780250 -142819680 + MER53 DNA DNA 3 186 -3 627 267 102 0 chrX 19780250 19780437 -142819493 - MIR SINE MIR -32 230 25 21 36 0 0 chrX 19780505 19780533 -142819397 + AT_rich Low_complexity Low_complexity 1 28 0 2389 78 3 16 chrX 19781291 19781624 -142818306 + AluY SINE Alu 1 311 0 953 147 0 0 chrX 19781723 19781866 -142818064 - FLAM_C SINE Alu 0 143 1 317 257 47 9 chrX 19782548 19782717 -142817213 + MER115 DNA AcHobo 39 251 -442 231 222 0 0 chrX 19782782 19782822 -142817108 + Zaphod DNA AcHobo 3945 3984 -47 1147 246 108 42 chrX 19782822 19783336 -142816594 - MLT1H LTR MaLR 0 555 1 302 200 0 0 chrX 19783338 19783388 -142816542 + Zaphod DNA AcHobo 3982 4031 0 2173 126 3 3 chrX 19783432 19783733 -142816197 - AluSx SINE Alu -11 301 1 186 189 0 0 chrX 19785333 19785370 -142814560 + (CA)n Simple_repeat Simple_repeat 2 38 0 2214 91 29 16 chrX 19785970 19786279 -142813651 - AluSq SINE Alu 0 313 1 615 241 35 24 chrX 19786282 19786452 -142813478 - L1ME LINE L1 -394 5727 5556 2035 118 31 0 chrX 19786455 19786742 -142813188 + AluSq SINE Alu 1 296 -17 1011 225 67 0 chrX 19786822 19787031 -142812899 + MER58A DNA MER1_type 2 224 0 2046 111 37 13 chrX 19787161 19787459 -142812471 + AluSx SINE Alu 1 305 -7 371 331 39 31 chrX 19787695 19787949 -142811981 - L1M4 LINE L1 -2299 3847 3592 2073 152 0 0 chrX 19788114 19788411 -142811519 + AluSx SINE Alu 1 297 -15 490 216 35 0 chrX 19788444 19788560 -142811370 - L1MC4 LINE L1 0 8042 7923 253 237 14 36 chrX 19788579 19788718 -142811212 + (TA)n Simple_repeat Simple_repeat 2 137 0 186 250 0 0 chrX 19788867 19788939 -142810991 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 185 62 0 31 chrX 19789080 19789112 -142810818 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1865 160 0 4 chrX 19789112 19789393 -142810537 - AluSx SINE Alu -32 280 1 435 231 8 179 chrX 19789497 19789613 -142810317 + MIR SINE MIR 48 100 -162 1188 159 19 5 chrX 19789613 19789821 -142810109 + L1PB3 LINE L1 5943 6153 -1 435 231 8 179 chrX 19789821 19789955 -142809975 + MIR SINE MIR 100 255 -7 2314 107 0 0 chrX 19791000 19791300 -142808630 - AluSq SINE Alu -13 300 1 2266 115 0 3 chrX 19791757 19792070 -142807860 + AluSx SINE Alu 1 312 0 797 133 7 13 chrX 19792094 19792244 -142807686 + L1MA4 LINE L1 6143 6291 -9 2213 105 7 0 chrX 19792429 19792723 -142807207 - AluSx SINE Alu -14 298 3 493 272 42 62 chrX 19793059 19793287 -142806643 - MLT1K LTR MaLR -14 601 369 192 196 22 185 chrX 19793328 19793384 -142806546 - L2 LINE L2 -44 3269 3231 1648 102 159 0 chrX 19793384 19793671 -142806259 + AluSx SINE Alu 1 326 0 192 196 22 185 chrX 19793671 19793705 -142806225 - L2 LINE L2 -82 3231 3193 1207 196 34 40 chrX 19793751 19794077 -142805853 + MER33 DNA MER1_type 1 324 0 417 270 52 89 chrX 19794160 19794187 -142805743 + L2 LINE L2 3053 3079 -234 1594 181 49 3 chrX 19794187 19794474 -142805456 + AluSx SINE Alu 1 300 -12 417 270 52 89 chrX 19794474 19794716 -142805214 + L2 LINE L2 3079 3312 -1 322 174 58 0 chrX 19795068 19795137 -142804793 + MIR SINE MIR 63 135 -127 186 229 0 0 chrX 19795245 19795280 -142804650 + L2 LINE L2 3263 3297 -16 2172 116 0 0 chrX 19795677 19795970 -142803960 - AluSx SINE Alu -19 293 1 1973 214 52 2 chrX 19796048 19796510 -142803420 + Charlie4a DNA MER1_type 22 506 -2 1003 190 0 0 chrX 19796875 19797038 -142802892 + FRAM SINE Alu 2 164 -12 449 278 37 0 chrX 19798505 19798613 -142801317 - MIR SINE MIR -113 149 38 315 220 33 66 chrX 19798643 19798697 -142801233 - MIR SINE MIR -98 164 113 2082 121 22 112 chrX 19798697 19799109 -142800821 - THE1C LTR MaLR 0 375 1 315 220 33 66 chrX 19799109 19799145 -142800785 - MIR SINE MIR -149 113 77 1171 220 30 43 chrX 19799171 19799476 -142800454 - MER33 DNA MER1_type -1 323 23 615 213 16 0 chrX 19799496 19799618 -142800312 - MER5B DNA MER1_type -2 176 53 2282 95 0 0 chrX 19799618 19799926 -142800004 - AluSx SINE Alu 0 308 1 530 238 125 6 chrX 19800845 19801005 -142798925 - HsTC2 DNA Tc2 0 1900 1722 2588 111 15 15 chrX 19801011 19801406 -142798524 - L1PA13 LINE L1 -7 6156 5762 297 192 0 0 chrX 19801406 19801458 -142798472 - MER5A DNA MER1_type -126 63 12 2335 82 3 0 chrX 19802295 19802589 -142797341 - AluSg SINE Alu -15 295 1 524 318 80 17 chrX 19802823 19803112 -142796818 - L2 LINE L2 -351 2963 2657 1914 166 7 0 chrX 19803827 19804129 -142795801 + AluJb SINE Alu 1 304 -8 873 210 10 70 chrX 19804543 19804691 -142795239 + MER5A DNA MER1_type 2 137 -52 2329 90 0 26 chrX 19804691 19805003 -142794927 - AluSq SINE Alu -9 304 1 873 210 10 70 chrX 19805003 19805054 -142794876 + MER5A DNA MER1_type 136 189 0 508 282 160 11 chrX 19805405 19805593 -142794337 + MIR SINE MIR 35 250 -12 2066 101 11 14 chrX 19805714 19806000 -142793930 + AluSx SINE Alu 1 285 -27 1738 167 0 20 chrX 19807263 19807556 -142792374 + AluJo SINE Alu 1 287 -25 263 301 106 9 chrX 19808335 19808448 -142791482 - L2 LINE L2 -4 3268 3145 698 280 94 30 chrX 19808597 19808683 -142791247 + L1M4 LINE L1 4968 5047 -1099 2326 96 10 0 chrX 19808683 19808810 -142791120 + AluSx SINE Alu 3 127 -185 2328 88 3 19 chrX 19808810 19809127 -142790803 + AluSx SINE Alu 1 312 0 2326 96 10 0 chrX 19809127 19809301 -142790629 + AluSx SINE Alu 127 307 -5 698 280 94 30 chrX 19809301 19809586 -142790344 + L1M4 LINE L1 5047 5363 -783 492 155 225 8 chrX 19809601 19809730 -142790200 + L1ME3A LINE L1 5993 6149 -21 726 257 22 35 chrX 19810116 19810342 -142789588 - MIR SINE MIR -9 253 31 2344 89 20 0 chrX 19810501 19810803 -142789127 - AluSg SINE Alu -2 308 1 2254 103 0 3 chrX 19811667 19811957 -142787973 + AluSx SINE Alu 9 297 -15 189 0 0 0 chrX 19812151 19812172 -142787758 + (T)n Simple_repeat Simple_repeat 1 21 0 691 206 71 7 chrX 19815501 19815642 -142784288 - MER58B DNA MER1_type 0 341 192 621 246 102 80 chrX 19816163 19816651 -142783279 - L1MC5 LINE L1 -63 7898 7400 482 216 60 43 chrX 19816641 19816834 -142783096 + L1MC5 LINE L1 7023 7249 -625 * 264 310 62 9 chrX 19816836 19816949 -142782981 + L1MC4 LINE L1 7345 7463 -579 275 355 50 8 chrX 19817614 19817735 -142782195 + MIR3 SINE MIR 34 159 -49 249 368 83 15 chrX 19818456 19818589 -142781341 - MER91A DNA MER1_type -17 179 38 392 156 167 0 chrX 19818994 19819084 -142780846 - L1MA4 LINE L1 -2 6298 6194 * 11102 176 27 73 chrX 19819076 19821032 -142778898 - L1P4 LINE L1 -513 5652 3608 743 160 67 0 chrX 19821032 19821151 -142778779 - FLAM_A SINE Alu -6 127 1 11102 176 27 73 chrX 19821151 19822158 -142777772 - L1P4 LINE L1 -2557 3608 2868 2360 97 3 0 chrX 19822158 19822457 -142777473 + AluSq SINE Alu 1 300 -13 11102 176 27 73 chrX 19822457 19822870 -142777060 - L1P4 LINE L1 -3297 2868 2438 4390 153 10 14 chrX 19822895 19823599 -142776331 - L1M3f LINE L1 -4625 703 3 728 213 62 71 chrX 19824764 19825004 -142774926 - L1ME1 LINE L1 -4 6162 5925 2383 197 60 21 chrX 19825007 19825891 -142774039 - L1ME1 LINE L1 -309 5857 4935 2154 128 0 0 chrX 19825891 19826187 -142773743 - AluSx SINE Alu -16 296 1 2383 197 60 21 chrX 19826187 19826236 -142773694 - L1ME1 LINE L1 -1231 4935 4889 2288 121 0 0 chrX 19826274 19826581 -142773349 - AluSx SINE Alu 0 312 6 404 324 62 0 chrX 19826877 19827022 -142772908 + MIR3 SINE MIR 30 183 -25 471 261 42 28 chrX 19827711 19827853 -142772077 - MER5A DNA MER1_type 0 189 46 328 304 87 37 chrX 19827715 19827876 -142772054 + MER5A DNA MER1_type 18 186 -3 * 302 327 170 22 chrX 19828236 19828548 -142771382 + L2 LINE L2 2487 2844 -470 2549 118 28 3 chrX 19828585 19828940 -142770990 - THE1B LTR MaLR 0 364 1 2070 150 0 0 chrX 19829238 19829538 -142770392 - AluSx SINE Alu -12 300 1 2405 93 0 6 chrX 19829603 19829915 -142770015 - AluSg SINE Alu 0 310 1 282 292 10 31 chrX 19829941 19830037 -142769893 - L2 LINE L2 -2 3311 3218 318 115 0 0 chrX 19830987 19831039 -142768891 + (TTTCC)n Simple_repeat Simple_repeat 3 54 0 1034 309 47 12 chrX 19834055 19834480 -142765450 - MLT1L LTR MaLR 0 615 71 234 263 18 0 chrX 19834438 19834495 -142765435 - LTR67 LTR ERVL -401 156 99 * 2061 127 34 0 chrX 19834632 19834923 -142765007 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 19834959 19834983 -142764947 + AT_rich Low_complexity Low_complexity 1 24 0 309 276 5 73 chrX 19835035 19835227 -142764703 + GA-rich Low_complexity Low_complexity 1 179 0 2246 106 6 34 chrX 19835370 19835691 -142764239 + AluSx SINE Alu 1 312 0 274 230 120 20 chrX 19836878 19836978 -142762952 - L1ME4a LINE L1 -5 6116 6007 493 248 13 46 chrX 19837052 19837205 -142762725 + MER5A DNA MER1_type 18 165 -24 2320 97 0 13 chrX 19837755 19838065 -142761865 + AluSx SINE Alu 1 306 -6 1372 242 101 11 chrX 19838304 19838680 -142761250 - MLT1J2 LTR MaLR -2 448 39 3407 118 17 9 chrX 19838828 19839362 -142760568 - L1MA2 LINE L1 -34 6270 5733 183 269 103 39 chrX 19839363 19839441 -142760489 + L2 LINE L2 3212 3294 -19 486 234 170 4 chrX 19839833 19839989 -142759941 - MIR SINE MIR -63 145 19 6259 77 13 3 chrX 19840178 19841027 -142758903 - L1PB2 LINE L1 -2 6149 5293 682 219 56 0 chrX 19841350 19841510 -142758420 - MER63B DNA MER1_type -267 169 1 581 256 147 0 chrX 19841974 19842130 -142757800 + MER5A DNA MER1_type 11 189 0 987 186 38 6 chrX 19842199 19842382 -142757548 - MER5A DNA MER1_type 0 189 1 329 314 124 7 chrX 19842494 19842647 -142757283 + MIR SINE MIR 32 202 -60 790 130 0 0 chrX 19842687 19842802 -142757128 - MER46A DNA MER2_type -4 232 118 1906 143 3 29 chrX 19843354 19843662 -142756268 + AluJb SINE Alu 1 300 -12 485 299 86 25 chrX 19843691 19843763 -142756167 + MIR SINE MIR 7 73 -189 745 184 77 18 chrX 19843763 19843931 -142755999 - MER5B DNA MER1_type 0 178 1 485 299 86 25 chrX 19843931 19844055 -142755875 + MIR SINE MIR 73 215 -47 326 324 147 15 chrX 19844634 19844770 -142755160 + L2 LINE L2 3118 3271 -1 290 328 41 25 chrX 19844848 19844970 -142754960 + L2 LINE L2 3138 3261 -11 1123 227 152 86 chrX 19845077 19845185 -142754745 + Charlie7 DNA MER1_type 1 100 -2512 1404 120 0 10 chrX 19845185 19845385 -142754545 + L1PB3 LINE L1 5957 6154 0 1123 227 152 86 chrX 19845385 19845534 -142754396 + Charlie7 DNA MER1_type 100 238 -2374 2239 93 0 3 chrX 19845534 19845825 -142754105 + AluSx SINE Alu 10 299 -13 1123 227 152 86 chrX 19845825 19846244 -142753686 + Charlie7 DNA MER1_type 238 723 -1889 404 213 55 18 chrX 19846228 19846392 -142753538 + Charlie7 DNA MER1_type 2411 2580 -32 * 325 362 58 0 chrX 19846786 19846924 -142753006 - MIR SINE MIR -69 193 48 3258 184 87 52 chrX 19847003 19847316 -142752614 - MER6 DNA MER2_type 0 865 565 1296 37 0 43 chrX 19847316 19847480 -142752450 - L1PA5 LINE L1 -1 6153 5997 3258 184 87 52 chrX 19847480 19848001 -142751929 - MER6 DNA MER2_type -300 565 1 912 158 0 0 chrX 19849012 19849145 -142750785 - FLAM_C SINE Alu 0 133 1 2163 104 14 10 chrX 19849490 19849787 -142750143 + AluSx SINE Alu 1 298 -14 480 18 0 0 chrX 19849871 19849928 -142750002 + (TG)n Simple_repeat Simple_repeat 2 58 0 629 313 52 9 chrX 19849945 19850156 -142749774 + L3b LINE CR1 1270 1489 -94 2184 138 0 0 chrX 19850803 19851115 -142748815 - AluSx SINE Alu 0 312 1 1029 252 28 17 chrX 19851541 19851831 -142748099 - L2 LINE L2 -1863 1451 1159 5257 148 33 48 chrX 19851851 19851911 -142748019 - L1MA9 LINE L1 0 6312 6253 2191 102 0 10 chrX 19851911 19852204 -142747726 + AluSx SINE Alu 1 290 -22 5257 148 33 48 chrX 19852204 19853185 -142746745 - L1MA9 LINE L1 -59 6253 5287 5256 89 3 1 chrX 19853547 19854206 -142745724 + PABL_A LTR ERV1 1 660 0 495 257 46 63 chrX 19854986 19855161 -142744769 - MER5A DNA MER1_type -7 182 11 234 0 0 0 chrX 19855205 19855231 -142744699 + (A)n Simple_repeat Simple_repeat 1 26 0 670 72 0 0 chrX 19855932 19856015 -142743915 - AluSg/x SINE Alu -22 290 208 245 151 0 109 chrX 19856016 19856071 -142743859 - Alu SINE Alu -266 37 1 24 0 0 0 chrX 19856418 19856442 -142743488 + AT_rich Low_complexity Low_complexity 1 24 0 2095 141 0 13 chrX 19856450 19856762 -142743168 - AluSx SINE Alu -4 308 1 693 294 42 5 chrX 19856953 19857167 -142742763 - MIR SINE MIR 0 262 41 21 0 0 0 chrX 19857391 19857412 -142742518 + AT_rich Low_complexity Low_complexity 1 21 0 2261 131 117 65 chrX 19857982 19858425 -142741505 - MER31B LTR ERV1 0 466 1 24 0 0 0 chrX 19859286 19859310 -142740620 + AT_rich Low_complexity Low_complexity 1 24 0 196 275 163 25 chrX 19859366 19859446 -142740484 + MIR SINE MIR 61 151 -57 1302 229 12 102 chrX 19859519 19859850 -142740080 - MLT1H LTR MaLR -146 403 113 1973 136 3 0 chrX 19859850 19860144 -142739786 - AluJb SINE Alu -7 305 11 1302 229 12 102 chrX 19860144 19860214 -142739716 - MLT1H LTR MaLR -436 113 38 389 292 9 0 chrX 19860246 19860359 -142739571 + MIR SINE MIR 138 251 -11 2418 88 0 0 chrX 19860688 19860995 -142738935 - AluY SINE Alu -4 307 1 21 89 0 0 chrX 19861924 19861980 -142737950 + AT_rich Low_complexity Low_complexity 1 56 0 201 138 0 0 chrX 19862334 19862363 -142737567 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2403 91 0 0 chrX 19863729 19864036 -142735894 - AluSx SINE Alu -5 307 1 2143 105 7 20 chrX 19864921 19865227 -142734703 - AluSx SINE Alu -10 302 1 2521 194 29 45 chrX 19865678 19866236 -142733694 - MER44D DNA MER2_type -1 604 1 286 276 80 120 chrX 19866315 19866841 -142733089 + L2 LINE L2 1366 1870 -1444 2225 108 0 29 chrX 19867122 19867437 -142732493 + AluSx SINE Alu 1 306 -6 348 278 23 68 chrX 19867652 19867753 -142732177 + MIR3 SINE MIR 59 154 -54 610 162 19 199 chrX 19867753 19867907 -142732023 + MER5B DNA MER1_type 2 108 -70 2270 104 0 3 chrX 19867907 19868205 -142731725 - AluSx SINE Alu -15 297 1 610 162 19 199 chrX 19868205 19868266 -142731664 + MER5B DNA MER1_type 108 178 0 348 278 23 68 chrX 19868266 19868297 -142731633 + MIR3 SINE MIR 154 185 -23 1844 150 13 38 chrX 19868958 19869272 -142730658 - AluJo SINE Alu -6 306 1 1974 158 3 6 chrX 19869739 19870050 -142729880 - AluJb SINE Alu -2 310 1 979 126 0 0 chrX 19870050 19870185 -142729745 - AluJb SINE Alu -177 135 1 2179 102 0 7 chrX 19871173 19871457 -142728473 + AluSx SINE Alu 1 282 -30 210 312 45 52 chrX 19871615 19871769 -142728161 - MER5A DNA MER1_type -23 166 14 610 232 140 0 chrX 19874477 19874641 -142725289 + MER5A DNA MER1_type 3 189 0 613 256 63 5 chrX 19874645 19875052 -142724878 + LTR16C LTR ERVL 42 491 0 755 309 21 4 chrX 19875864 19876100 -142723830 + MIR SINE MIR 3 242 -20 966 167 0 0 chrX 19876347 19876497 -142723433 - FRAM SINE Alu -19 157 8 829 144 7 22 chrX 19876567 19876706 -142723224 - FLAM_C SINE Alu -6 137 1 1022 203 6 0 chrX 19876814 19876991 -142722939 - MER5A DNA MER1_type -6 183 6 381 374 104 14 chrX 19877078 19877334 -142722596 - L3 LINE CR1 -67 1510 1224 2301 119 0 0 chrX 19877334 19877646 -142722284 - AluSx SINE Alu 0 312 1 381 374 104 14 chrX 19877646 19877678 -142722252 - L3 LINE CR1 -353 1224 1196 964 233 5 5 chrX 19877719 19877929 -142722001 - MIR SINE MIR -44 218 9 958 205 22 0 chrX 19877929 19878114 -142721816 + MER5A DNA MER1_type 1 189 0 707 272 47 93 chrX 19878127 19878535 -142721395 - L3 LINE CR1 -428 1149 761 481 257 112 76 chrX 19878577 19878833 -142721097 - L1ME4a LINE L1 -22 6099 5819 2234 92 0 3 chrX 19878833 19879116 -142720814 + AluSx SINE Alu 1 282 -30 481 257 112 76 chrX 19879116 19879306 -142720624 - L1ME4a LINE L1 -302 5819 5637 346 342 80 5 chrX 19879530 19879717 -142720213 - L3 LINE CR1 -979 598 398 421 98 0 0 chrX 19879987 19880048 -142719882 - L1MB5 LINE L1 0 6174 6114 1635 130 8 4 chrX 19880049 19880302 -142719628 + L1MA4A LINE L1 6048 6301 -2 1737 174 16 6 chrX 19880306 19880623 -142719307 - L1MB5 LINE L1 -46 6128 5809 406 272 160 30 chrX 19880890 19881059 -142718871 + MIR SINE MIR 56 246 -16 1215 231 56 92 chrX 19881223 19882031 -142717899 - L1MC5 LINE L1 -25 7936 7252 774 148 55 82 chrX 19882055 19882193 -142717737 + MER5B DNA MER1_type 1 134 -44 2143 125 0 16 chrX 19882193 19882497 -142717433 + AluSx SINE Alu 1 299 -13 774 148 55 82 chrX 19882497 19882541 -142717389 + MER5B DNA MER1_type 134 178 0 1158 201 55 65 chrX 19882552 19882986 -142716944 - L1MC5 LINE L1 -733 7228 6799 2264 126 0 0 chrX 19883401 19883704 -142716226 + AluSx SINE Alu 3 306 -1 198 0 0 0 chrX 19883704 19883726 -142716204 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 826 208 128 42 chrX 19884878 19885206 -142714724 - MLT1H1 LTR MaLR 0 555 185 2425 133 27 27 chrX 19885217 19885631 -142714299 - L1MA7 LINE L1 -9 6282 5869 2342 63 3 30 chrX 19886329 19886630 -142713300 + AluSx SINE Alu 1 293 -19 26 0 0 0 chrX 19886990 19887016 -142712914 + AT_rich Low_complexity Low_complexity 1 26 0 248 152 22 0 chrX 19887016 19887062 -142712868 - MER5B DNA MER1_type -128 50 4 538 207 171 55 chrX 19887076 19887240 -142712690 - MER5A DNA MER1_type 0 189 7 964 233 15 5 chrX 19887247 19887453 -142712477 - MER58A DNA MER1_type 0 224 17 301 325 0 0 chrX 19887447 19887524 -142712406 - MER58A DNA MER1_type -25 82 6 * 26 50 0 0 chrX 19888902 19888942 -142710988 + AT_rich Low_complexity Low_complexity 1 40 0 443 305 30 64 chrX 19888967 19889200 -142710730 + MIR SINE MIR 21 245 -17 978 256 52 21 chrX 19889443 19889732 -142710198 + L1ME3 LINE L1 5834 6131 -31 1993 131 28 0 chrX 19889858 19890148 -142709782 - AluJo SINE Alu -14 298 1 21 0 0 0 chrX 19890987 19891008 -142708922 + AT_rich Low_complexity Low_complexity 1 21 0 258 98 0 0 chrX 19891012 19891053 -142708877 + L1MA3 LINE L1 6265 6305 0 526 294 5 72 chrX 19891268 19891304 -142708626 - MER5A DNA MER1_type -7 182 145 1318 167 19 9 chrX 19891304 19891520 -142708410 + MER20 DNA MER1_type 2 219 0 526 294 5 72 chrX 19891520 19891677 -142708253 - MER5A DNA MER1_type -44 145 2 2099 123 0 0 chrX 19891792 19892076 -142707854 - AluSx SINE Alu -28 284 1 30 45 0 0 chrX 19892572 19892616 -142707314 + AT_rich Low_complexity Low_complexity 1 44 0 752 192 27 20 chrX 19892720 19892866 -142707064 - MER58A DNA MER1_type -1 223 77 360 250 132 0 chrX 19892884 19893020 -142706910 - MER34 LTR ERV1 -14 528 375 250 223 82 52 chrX 19893235 19893380 -142706550 - MER34B LTR ERV1 -434 131 10 344 149 119 30 chrX 19893381 19893448 -142706482 - MER58A DNA MER1_type -34 73 1 2128 128 0 13 chrX 19893735 19894047 -142705883 - AluSx SINE Alu -4 308 1 836 176 0 0 chrX 19894074 19894205 -142705725 + AluSq/x SINE Alu 1 131 -182 183 361 16 0 chrX 19896034 19896095 -142703835 - L2 LINE L2 -21 3292 3231 412 276 0 9 chrX 19896121 19896226 -142703704 + MER58B DNA MER1_type 4 107 -234 835 188 14 0 chrX 19896229 19896357 -142703573 + BC200 scRNA scRNA 2 134 -66 225 0 0 0 chrX 19896357 19896382 -142703548 + (CAA)n Simple_repeat Simple_repeat 2 26 0 835 188 14 0 chrX 19896382 19896397 -142703533 + BC200 scRNA scRNA 134 147 -53 1202 156 34 30 chrX 19896410 19896647 -142703283 + MER58B DNA MER1_type 104 341 0 258 192 0 0 chrX 19896736 19896788 -142703142 - MIR SINE MIR -114 148 97 2728 71 21 63 chrX 19896947 19897131 -142702799 - THE1B LTR MaLR 0 364 203 2352 103 3 3 chrX 19897131 19897442 -142702488 + AluSq SINE Alu 1 311 -2 2728 71 21 63 chrX 19897442 19897637 -142702293 - THE1B LTR MaLR -161 203 1 2121 119 7 14 chrX 19897716 19898011 -142701919 + AluSx SINE Alu 1 293 -19 1009 170 12 0 chrX 19898141 19898306 -142701624 + AluSg/x SINE Alu 134 300 -12 231 289 58 39 chrX 19899404 19899508 -142700422 - MIR SINE MIR -4 258 153 325 275 71 87 chrX 19899553 19899816 -142700114 - MLT1J LTR MaLR -7 504 238 1066 148 81 34 chrX 19899816 19900025 -142699905 + MER20 DNA MER1_type 1 219 0 325 275 71 87 chrX 19900025 19900177 -142699753 - MLT1J LTR MaLR -273 238 95 243 0 0 0 chrX 19900177 19900204 -142699726 + (TTG)n Simple_repeat Simple_repeat 1 27 0 325 275 71 87 chrX 19900204 19900292 -142699638 - MLT1J LTR MaLR -416 95 7 198 269 0 19 chrX 19900298 19900350 -142699580 - MIR SINE MIR -150 112 62 337 192 0 14 chrX 19900717 19900790 -142699140 - LTR33A LTR ERVL -8 515 444 200 125 50 0 chrX 19901508 19901548 -142698382 + T-rich Low_complexity Low_complexity 2 43 0 730 284 63 8 chrX 19902092 19902331 -142697599 - LTR16A1 LTR ERVL -1 456 205 1143 196 9 13 chrX 19902678 19902903 -142697027 - MER58A DNA MER1_type 0 224 1 250 426 33 15 chrX 19903044 19903316 -142696614 + L2 LINE L2 2638 2914 -400 5070 136 31 57 chrX 19903395 19904344 -142695586 - L1MA8 LINE L1 -27 6264 5334 2037 146 0 16 chrX 19904344 19904659 -142695271 - AluJo SINE Alu -2 310 1 5070 136 31 57 chrX 19904659 19904795 -142695135 - L1MA8 LINE L1 -957 5334 5196 237 319 138 9 chrX 19904796 19904912 -142695018 + L2 LINE L2 2957 3087 -185 209 222 0 0 chrX 19905045 19905081 -142694849 + L2 LINE L2 3219 3254 -18 335 339 28 50 chrX 19906278 19906458 -142693472 - MIR SINE MIR -50 212 37 649 270 26 26 chrX 19906594 19906820 -142693110 + MIR SINE MIR 13 238 -24 308 156 31 0 chrX 19906970 19907034 -142692896 - LTR33A LTR ERVL -16 507 442 852 302 36 0 chrX 19907195 19907443 -142692487 + MIR SINE MIR 1 257 -5 1702 118 42 64 chrX 19907941 19908298 -142691632 - THE1C LTR MaLR 0 375 27 428 231 180 55 chrX 19909186 19909662 -142690268 - LTR33A LTR ERVL -20 503 2 266 0 0 29 chrX 19909876 19909911 -142690019 + (TG)n Simple_repeat Simple_repeat 2 35 0 605 62 0 0 chrX 19910365 19910445 -142689485 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chrX 19911296 19911325 -142688605 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 19911365 19911393 -142688537 + AT_rich Low_complexity Low_complexity 1 28 0 2297 106 0 7 chrX 19912213 19912515 -142687415 - AluSx SINE Alu -12 300 1 21 36 0 0 chrX 19912655 19912683 -142687247 + AT_rich Low_complexity Low_complexity 1 28 0 2159 121 10 0 chrX 19912970 19913267 -142686663 + AluSx SINE Alu 1 300 -12 282 56 0 0 chrX 19913267 19913303 -142686627 + (TA)n Simple_repeat Simple_repeat 2 37 0 273 215 84 9 chrX 19913659 19913766 -142686164 - L1ME LINE L1 -289 5877 5763 376 237 102 17 chrX 19915845 19915963 -142683967 - MIR SINE MIR -2 260 133 235 119 0 0 chrX 19916092 19916134 -142683796 - L1MDb LINE L1 -5085 1562 1521 27 29 0 0 chrX 19916154 19916188 -142683742 + AT_rich Low_complexity Low_complexity 1 34 0 2448 72 17 20 chrX 19916192 19916538 -142683392 - L1PB1 LINE L1 -1 6150 5806 613 223 79 66 chrX 19916538 19916856 -142683074 - L1MDb LINE L1 -5214 1332 1011 290 219 13 139 chrX 19917022 19917259 -142682671 - L1MDb LINE L1 -5667 875 669 6017 125 24 3 chrX 19917359 19919200 -142680730 - L1MA3 LINE L1 -10 7714 5308 1811 158 41 12 chrX 19919198 19919457 -142680473 - L1MA3 LINE L1 -7203 362 89 * 270 0 0 0 chrX 19919457 19919487 -142680443 + (TG)n Simple_repeat Simple_repeat 1 30 0 1811 158 41 12 chrX 19919487 19919569 -142680361 - L1MA3 LINE L1 -7476 89 11 352 330 50 28 chrX 19919693 19919911 -142680019 - L1MDb LINE L1 -6304 238 16 246 229 0 136 chrX 19922266 19922384 -142677546 - MER102a DNA MER1_type -8 322 221 822 242 142 96 chrX 19922502 19922621 -142677309 - MLT1F1 LTR MaLR -8 559 447 2266 107 3 0 chrX 19922621 19922920 -142677010 - AluSx SINE Alu -12 300 1 822 242 142 96 chrX 19922920 19923334 -142676596 - MLT1F1 LTR MaLR -120 447 1 2852 198 19 3 chrX 19923911 19924501 -142675429 - MLT1E2 LTR MaLR 0 626 28 311 218 264 0 chrX 19924803 19924913 -142675017 + MIR SINE MIR 119 257 -5 455 210 0 0 chrX 19925143 19925224 -142674706 - FRAM/FAM SINE Alu -97 88 8 588 214 15 8 chrX 19925319 19925450 -142674480 + MER58D DNA MER1_type 1 132 -254 5163 64 16 30 chrX 19925482 19926218 -142673712 - L1MA2 LINE L1 -3 6301 5576 497 129 0 11 chrX 19926226 19926319 -142673611 + MER58D DNA MER1_type 125 216 -170 874 157 0 0 chrX 19926319 19926453 -142673477 + FLAM_C SINE Alu 1 134 -9 797 128 104 6 chrX 19926454 19926618 -142673312 + MER58D DNA MER1_type 207 386 0 346 219 88 53 chrX 19926666 19926780 -142673150 - MIR3 SINE MIR -25 183 66 25 0 0 28 chrX 19927866 19927886 -142672044 + AT_rich Low_complexity Low_complexity 1 21 -14 1986 144 0 26 chrX 19927886 19928192 -142671738 - AluSx SINE Alu -14 298 1 25 0 0 28 chrX 19928192 19928207 -142671723 + AT_rich Low_complexity Low_complexity 21 35 0 516 268 106 62 chrX 19928212 19928396 -142671534 + L1ME3 LINE L1 5459 5633 -533 803 231 33 6 chrX 19928396 19928578 -142671352 + MER5A DNA MER1_type 3 189 0 516 268 106 62 chrX 19928578 19928781 -142671149 + L1ME3 LINE L1 5633 5863 -303 614 198 23 52 chrX 19928956 19929128 -142670802 + L2 LINE L2 2061 2227 -1087 1363 252 61 32 chrX 19929146 19929622 -142670308 + L2 LINE L2 2574 3061 -252 33 43 0 0 chrX 19930015 19930062 -142669868 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chrX 19930311 19930340 -142669590 + AT_rich Low_complexity Low_complexity 1 29 0 517 295 107 17 chrX 19930363 19930812 -142669118 - L1ME3 LINE L1 -211 5951 5452 228 313 68 20 chrX 19931903 19932050 -142667880 + MIR SINE MIR 77 230 -32 2291 95 0 3 chrX 19932176 19932472 -142667458 + AluSx SINE Alu 1 295 -17 800 213 101 41 chrX 19932492 19932759 -142667171 + L1ME3 LINE L1 5836 6123 -39 2013 151 0 7 chrX 19932759 19933058 -142666872 + AluJo SINE Alu 1 297 -15 800 213 101 41 chrX 19933058 19933093 -142666837 + L1ME3 LINE L1 6123 6154 -8 903 153 77 0 chrX 19933210 19933380 -142666550 - MER58A DNA MER1_type 0 224 42 187 342 13 13 chrX 19933999 19934075 -142665855 - MIR3 SINE MIR -21 187 112 1887 223 95 6 chrX 19934133 19934608 -142665322 + MLT1F LTR MaLR 26 542 0 902 240 20 0 chrX 19934663 19934859 -142665071 + MIR SINE MIR 4 203 -59 34 72 0 0 chrX 19934883 19934952 -142664978 + AT_rich Low_complexity Low_complexity 1 69 0 290 139 73 0 chrX 19934952 19935089 -142664841 + (TA)n Simple_repeat Simple_repeat 1 147 0 305 309 64 0 chrX 19935105 19935199 -142664731 + MIR SINE MIR 161 260 -2 184 287 55 118 chrX 19935198 19935564 -142664366 - L2 LINE L2 -92 3180 2838 * 2823 85 3 0 chrX 19935662 19936025 -142663905 - THE1B LTR MaLR 0 364 1 2993 144 48 6 chrX 19936235 19936736 -142663194 + Tigger7 DNA MER2_type 1 522 -1965 443 165 0 25 chrX 19936757 19936836 -142663094 + Tigger7 DNA MER2_type 2415 2491 0 710 284 69 9 chrX 19936931 19937149 -142662781 - MIR SINE MIR -31 231 1 2398 106 0 0 chrX 19937191 19937503 -142662427 + AluSx SINE Alu 1 312 0 2043 124 0 26 chrX 19938041 19938347 -142661583 - AluSx SINE Alu -12 300 3 596 270 93 29 chrX 19939030 19939374 -142660556 - L1ME4a LINE L1 -233 5888 5523 635 192 134 35 chrX 19939720 19939892 -142660038 + MER5A DNA MER1_type 1 189 0 596 207 0 0 chrX 19939945 19940056 -142659874 - MER81 DNA DNA -2 112 2 588 204 62 51 chrX 19940785 19940961 -142658969 - MER5B DNA MER1_type 0 178 1 426 224 7 30 chrX 19940980 19941127 -142658803 - MER5A DNA MER1_type 0 189 4 233 253 242 10 chrX 19941378 19941477 -142658453 + L2 LINE L2 3138 3259 -13 227 129 65 0 chrX 19942505 19942567 -142657363 + (TTA)n Simple_repeat Simple_repeat 2 67 0 676 301 84 35 chrX 19943219 19943565 -142656365 - L2 LINE L2 -5 3308 2946 703 120 7 14 chrX 19944609 19944751 -142655179 - Charlie5 DNA MER1_type -121 2491 2351 1396 56 0 0 chrX 19944751 19944930 -142655000 - L1PA6 LINE L1 0 6154 5976 429 237 84 32 chrX 19945213 19945403 -142654527 - L1MC4a LINE L1 -1914 5894 5695 940 177 44 0 chrX 19945432 19945613 -142654317 + MER5A DNA MER1_type 1 189 0 342 287 104 18 chrX 19946221 19946385 -142653545 - L1MC4a LINE L1 -1829 5979 5802 515 93 6 74 chrX 19946523 19946685 -142653245 + (TCCC)n Simple_repeat Simple_repeat 3 153 0 198 156 0 0 chrX 19946805 19946850 -142653080 + A-rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chrX 19947686 19947719 -142652211 + AT_rich Low_complexity Low_complexity 1 33 0 5326 191 19 9 chrX 19948071 19948553 -142651377 - MER45B DNA AcHobo -545 1036 560 2497 113 23 0 chrX 19948553 19948907 -142651023 - THE1B LTR MaLR 0 364 3 5326 191 19 9 chrX 19948907 19949449 -142650481 - MER45B DNA AcHobo -1021 560 2 191 363 148 13 chrX 19950138 19950455 -142649475 - L2 LINE L2 -342 2972 2613 581 202 8 0 chrX 19950724 19950848 -142649082 - LTR16C LTR ERVL -8 483 359 2198 174 68 33 chrX 19950865 19951347 -142648583 - MLT1D LTR MaLR -6 499 1 1002 246 108 25 chrX 19951348 19951673 -142648257 - LTR16C LTR ERVL -139 352 1 216 295 0 13 chrX 19951825 19951903 -142648027 + MIR3 SINE MIR 132 208 0 324 286 140 35 chrX 19952234 19952405 -142647525 + L3 LINE CR1 985 1173 -404 432 90 0 13 chrX 19952556 19952634 -142647296 - L1MA1 LINE L1 -252 6050 5974 841 314 64 37 chrX 19952678 19953086 -142646844 + L3 LINE CR1 1158 1576 -1 2255 84 3 20 chrX 19953342 19953684 -142646246 - AluSp SINE Alu 0 313 1 221 281 62 42 chrX 19954620 19954716 -142645214 - L2 LINE L2 -47 3266 3169 603 247 152 64 chrX 19954761 19955292 -142644638 - MLT1H LTR MaLR -15 534 1 365 267 0 29 chrX 19955587 19955692 -142644238 - MIR3 SINE MIR -7 201 100 417 263 20 0 chrX 19956044 19956143 -142643787 + U4 snRNA snRNA 3 103 -42 2258 86 0 0 chrX 19956475 19956781 -142643149 - AluSc SINE Alu 0 306 1 225 247 41 41 chrX 19957491 19957564 -142642366 + L2 LINE L2 3234 3306 -7 496 241 129 0 chrX 19958682 19958798 -142641132 + MER5A DNA MER1_type 1 131 -58 792 256 88 17 chrX 19959209 19959447 -142640483 + MIR SINE MIR 8 262 0 270 247 152 124 chrX 19959632 19959810 -142640120 - MIR SINE MIR -78 184 2 1609 177 47 14 chrX 19960327 19960604 -142639326 + AluJo SINE Alu 1 286 -26 260 121 69 69 chrX 19960718 19960776 -142639154 + MIR SINE MIR 7 64 -198 551 226 244 68 chrX 19960809 19960859 -142639071 - LTR16A1 LTR ERVL -9 448 408 2038 122 0 0 chrX 19960859 19961147 -142638783 - AluSx SINE Alu -24 288 1 551 226 244 68 chrX 19961147 19961477 -142638453 - LTR16A1 LTR ERVL -49 408 1 192 202 111 101 chrX 19961477 19961576 -142638354 + MIR SINE MIR 109 208 -54 1826 166 52 75 chrX 19961747 19962188 -142637742 - MLT1D LTR MaLR 0 505 75 450 136 0 0 chrX 19962258 19962324 -142637606 - MLT1D LTR MaLR -431 74 9 1392 202 26 16 chrX 19962347 19962654 -142637276 - MER58B DNA MER1_type -16 325 16 29120 99 16 41 chrX 19965605 19972165 -142627765 - L1PA7 LINE L1 -13 6456 11 1760 169 39 11 chrX 19972224 19972579 -142627351 - MLT1A1 LTR MaLR 0 365 1 1126 206 37 0 chrX 19973420 19973634 -142626296 + MER58A DNA MER1_type 3 224 0 293 130 270 70 chrX 19974738 19974838 -142625092 - MLT1I LTR MaLR -6 403 284 864 72 65 72 chrX 19974868 19975006 -142624924 + AluSx SINE Alu 1 137 -176 31460 104 13 37 chrX 19975007 19981304 -142618626 + L1PA7 LINE L1 12 6147 -7 1342 113 0 0 chrX 19981304 19981489 -142618441 + AluSx SINE Alu 121 305 -7 494 242 0 53 chrX 19981626 19981758 -142618172 - MLT1I LTR MaLR -236 173 49 977 218 97 7 chrX 19984128 19984417 -142615513 + L1ME3 LINE L1 5837 6151 -11 180 299 60 0 chrX 19984558 19984625 -142615305 + MIR SINE MIR 94 164 -98 288 0 0 0 chrX 19986073 19986105 -142613825 + (TG)n Simple_repeat Simple_repeat 2 33 0 321 26 0 0 chrX 19986320 19986358 -142613572 + (TA)n Simple_repeat Simple_repeat 2 39 0 208 373 90 22 chrX 19988579 19988713 -142611217 - L2 LINE L2 -2 3270 3128 2660 43 0 0 chrX 19989184 19989484 -142610446 + AluY SINE Alu 1 300 -11 889 251 136 18 chrX 19989854 19990185 -142609745 - MLT1J2 LTR MaLR -51 399 30 226 290 198 37 chrX 19991284 19991446 -142608484 - MIR SINE MIR -14 248 61 623 275 79 5 chrX 19991679 19991868 -142608062 - MIR SINE MIR -12 250 48 4126 147 29 23 chrX 19992150 19992609 -142607321 - L1MA8 LINE L1 -3 6288 5833 216 0 0 0 chrX 19992609 19992633 -142607297 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2494 21 0 0 chrX 19992633 19992916 -142607014 - AluY SINE Alu -28 283 1 4126 147 29 23 chrX 19992916 19993247 -142606683 - L1MA8 LINE L1 -457 5834 5492 21 0 0 0 chrX 19993485 19993506 -142606424 + AT_rich Low_complexity Low_complexity 1 21 0 325 311 132 55 chrX 19994272 19994507 -142605423 + L2 LINE L2 2720 2972 -342 219 186 0 0 chrX 19994614 19994657 -142605273 + CT-rich Low_complexity Low_complexity 4 46 0 1742 182 0 22 chrX 19994713 19995026 -142604904 + AluJo SINE Alu 1 306 -6 1510 275 104 10 chrX 19995137 19995830 -142604100 - L2 LINE L2 -1 3312 2556 2341 91 3 0 chrX 19996030 19996327 -142603603 - AluSx SINE Alu -13 299 2 376 291 34 30 chrX 19996337 19996602 -142603328 - L1ME LINE L1 -301 5820 5555 1783 152 11 4 chrX 19996826 19997102 -142602828 + AluJb SINE Alu 1 278 -34 207 100 0 0 chrX 19997102 19997132 -142602798 + (TAAG)n Simple_repeat Simple_repeat 2 31 0 3646 65 4 12 chrX 19997249 19997739 -142602191 + L1PA7 LINE L1 5665 6150 -4 2361 188 123 94 chrX 19998264 19998592 -142601338 + L1ME3A LINE L1 5293 5610 -560 333 194 0 0 chrX 19998592 19998659 -142601271 - MER116 DNA Mariner -13 67 1 2361 188 123 94 chrX 19998659 19999117 -142600813 + L1ME3A LINE L1 5610 6170 0 183 304 27 76 chrX 19999296 19999480 -142600450 - L2 LINE L2 -182 3090 2916 * 287 313 138 27 chrX 19999471 19999842 -142600088 - L2 LINE L2 -359 2955 2544 27 0 0 0 chrX 20001674 20001701 -142598229 + AT_rich Low_complexity Low_complexity 1 27 0 2057 98 0 0 chrX 20001794 20002058 -142597872 + AluY SINE Alu 1 264 -47 23 33 0 0 chrX 20002263 20002293 -142597637 + AT_rich Low_complexity Low_complexity 1 30 0 332 241 66 91 chrX 20002413 20002654 -142597276 + L1M4 LINE L1 4022 4256 -1890 385 308 31 56 chrX 20002923 20003209 -142596721 + L1M4 LINE L1 4945 5223 -923 4370 219 27 4 chrX 20003386 20004391 -142595539 - L1P LINE L1 -3180 2966 1939 258 32 0 0 chrX 20005533 20005564 -142594366 + (TG)n Simple_repeat Simple_repeat 1 31 0 3672 161 50 1 chrX 20005876 20006578 -142593352 + L1MA4 LINE L1 5273 6008 -292 294 164 30 0 chrX 20006595 20006662 -142593268 + L1MB3 LINE L1 6087 6155 -28 21 36 0 0 chrX 20006663 20006691 -142593239 + AT_rich Low_complexity Low_complexity 1 28 0 1359 233 11 7 chrX 20007091 20007378 -142592552 - AluJo SINE Alu -14 288 1 23 0 0 0 chrX 20007812 20007835 -142592095 + AT_rich Low_complexity Low_complexity 1 23 0 241 259 157 38 chrX 20007864 20008049 -142591881 - L1MC4a LINE L1 -1879 5929 5723 2761 134 14 5 chrX 20008179 20008597 -142591333 + MSTA LTR MaLR 7 428 0 293 146 0 0 chrX 20009109 20009164 -142590766 - MLT2A2 LTR ERVL 0 453 399 213 226 0 0 chrX 20009164 20009217 -142590713 + (TA)n Simple_repeat Simple_repeat 2 54 0 328 188 16 0 chrX 20009217 20009281 -142590649 - MLT2A2 LTR ERVL -40 413 349 837 205 98 55 chrX 20009807 20010153 -142589777 + Charlie4a DNA MER1_type 80 440 -68 8323 33 4 0 chrX 20011895 20012902 -142587028 - L1P LINE L1 -1039 5107 4097 305 311 85 45 chrX 20014102 20014279 -142585651 + HAL1 LINE L1 1733 1916 -591 30 45 0 0 chrX 20014900 20014944 -142584986 + AT_rich Low_complexity Low_complexity 1 44 0 363 333 70 9 chrX 20016008 20016202 -142583728 - MIR SINE MIR -57 205 1 511 119 163 88 chrX 20016452 20016612 -142583318 + MLT1C LTR MaLR 4 175 -292 595 176 49 0 chrX 20016614 20016716 -142583214 + FLAM_C SINE Alu 1 107 -36 3230 199 0 58 chrX 20016816 20017384 -142582546 + L1P3 LINE L1 1018 1509 -4942 2004 142 30 0 chrX 20017384 20017687 -142582243 + AluSq SINE Alu 1 312 -1 3230 199 0 58 chrX 20017687 20017937 -142581993 + L1P3 LINE L1 1509 1772 -4679 281 230 40 0 chrX 20018398 20018472 -142581458 - MIR SINE MIR -111 151 75 2104 81 0 11 chrX 20018873 20019156 -142580774 + AluY SINE Alu 1 280 -31 523 202 89 16 chrX 20019268 20019392 -142580538 - THE1C LTR MaLR -241 134 2 25 51 0 0 chrX 20019653 20019692 -142580238 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chrX 20019870 20019899 -142580031 + AT_rich Low_complexity Low_complexity 1 29 0 818 201 74 0 chrX 20020684 20020953 -142578977 + MER114 LTR ERV 214 502 -146 24 0 0 0 chrX 20021165 20021189 -142578741 + AT_rich Low_complexity Low_complexity 1 24 0 2524 163 34 0 chrX 20021201 20021642 -142578288 - LTR51 LTR ERV1 -34 637 182 598 198 69 0 chrX 20021669 20021785 -142578145 - LTR51 LTR ERV1 -547 124 1 5072 166 10 24 chrX 20022020 20023029 -142576901 + L1 LINE L1 3603 4597 -1549 195 289 61 62 chrX 20023344 20023452 -142576478 - MIR SINE MIR -67 141 45 932 185 4 88 chrX 20024550 20024777 -142575153 - LTR8A LTR ERV1 -486 241 34 23 0 0 0 chrX 20025423 20025446 -142574484 + AT_rich Low_complexity Low_complexity 1 23 0 534 304 73 85 chrX 20025622 20026116 -142573814 - L1MEd LINE L1 -5029 1090 603 209 182 0 0 chrX 20026873 20026906 -142573024 + (TG)n Simple_repeat Simple_repeat 1 33 0 1578 124 36 0 chrX 20027037 20027287 -142572643 - MLT1B LTR MaLR 0 390 132 996 232 45 68 chrX 20027421 20027865 -142572065 + L1ME2 LINE L1 5662 6095 -69 185 0 40 0 chrX 20027999 20028024 -142571906 + (TA)n Simple_repeat Simple_repeat 2 27 0 616 194 14 0 chrX 20028288 20028427 -142571503 - L1MA2 LINE L1 -3 6301 6161 284 114 0 0 chrX 20028833 20028877 -142571053 - L1MA9 LINE L1 -33 6279 6236 6243 93 2 0 chrX 20029876 20030758 -142569172 - L1P LINE L1 -1430 4716 3833 1990 114 0 0 chrX 20030756 20031053 -142568877 - L1P LINE L1 -3602 2544 2248 * 205 278 56 22 chrX 20031285 20031375 -142568555 + MIR SINE MIR 30 122 -140 873 301 83 57 chrX 20031511 20032113 -142567817 + L2 LINE L2 1735 2352 -962 1774 218 49 43 chrX 20032673 20033183 -142566747 - MER74A LTR ERVL 0 558 46 619 313 68 47 chrX 20034448 20035061 -142564869 - L1M4 LINE L1 -1488 4546 3921 873 142 196 0 chrX 20035262 20035466 -142564464 - L1MA8 LINE L1 -27 6264 6021 245 216 0 0 chrX 20035500 20035551 -142564379 - AluJ/monomer SINE Alu -1 307 257 910 350 2 28 chrX 20035899 20036328 -142563602 - L1M4 LINE L1 -5537 418 1 249 242 15 0 chrX 20036330 20036396 -142563534 - L1MEc LINE L1 -3844 2371 2305 34 55 0 0 chrX 20036580 20036635 -142563295 + AT_rich Low_complexity Low_complexity 1 55 0 465 313 139 9 chrX 20036855 20037085 -142562845 - L1MEc LINE L1 -4574 1822 1563 673 186 54 0 chrX 20037089 20037218 -142562712 - THE1B LTR MaLR 0 364 229 35 54 0 0 chrX 20037369 20037425 -142562505 + AT_rich Low_complexity Low_complexity 1 56 0 264 298 0 39 chrX 20037636 20037656 -142562274 + MLT1I LTR MaLR 283 302 -107 370 160 53 0 chrX 20037656 20037731 -142562199 + MER116 DNA Mariner 2 80 0 264 298 0 39 chrX 20037731 20037814 -142562116 + MLT1I LTR MaLR 302 382 -27 430 145 34 51 chrX 20037961 20038078 -142561852 - L1MA4A LINE L1 -6 6297 6183 2410 84 0 0 chrX 20038083 20038391 -142561539 - AluY SINE Alu -3 308 1 598 195 25 8 chrX 20038400 20038518 -142561412 - FLAM_C SINE Alu -18 125 6 980 143 14 0 chrX 20038826 20038973 -142560957 + AluSg/x SINE Alu 145 293 -19 24 0 0 0 chrX 20039009 20039033 -142560897 + AT_rich Low_complexity Low_complexity 1 24 0 1339 244 58 25 chrX 20039038 20039490 -142560440 + L1MB8 LINE L1 5706 6171 -7 22 0 0 0 chrX 20041358 20041380 -142558550 + AT_rich Low_complexity Low_complexity 1 22 0 210 114 91 0 chrX 20041473 20041517 -142558413 + (TATTG)n Simple_repeat Simple_repeat 3 50 0 260 282 147 32 chrX 20043614 20043770 -142556160 + MIR SINE MIR 2 175 -87 274 262 0 0 chrX 20044189 20044250 -142555680 + MER4-int LTR ERV1 1101 1161 -5437 185 395 32 8 chrX 20044536 20044660 -142555270 + L3 LINE CR1 353 479 -1098 1563 197 130 19 chrX 20045958 20046390 -142553540 + MER21B LTR ERV1 375 854 -9 5512 156 17 40 chrX 20046721 20047790 -142552140 - THE1C-int LTR MaLR -531 1049 3 1126 177 80 47 chrX 20047792 20048091 -142551839 - THE1C LTR MaLR 0 375 67 289 291 103 0 chrX 20048191 20048308 -142551622 + MLT1D LTR MaLR 198 326 -179 1157 231 44 18 chrX 20048577 20048970 -142550960 + MER54B LTR ERVL 488 793 0 405 155 7 50 chrX 20048970 20049116 -142550814 + MLT1D LTR MaLR 322 505 0 1101 225 100 14 chrX 20049116 20049405 -142550525 + MLT1E2 LTR MaLR 271 584 -42 211 311 44 121 chrX 20049489 20049737 -142550193 + L2 LINE L2 2992 3220 -52 847 180 0 0 chrX 20050031 20050170 -142549760 + AluJo SINE Alu 1 139 -173 1663 161 0 18 chrX 20050271 20050550 -142549380 + AluJb SINE Alu 22 295 -17 492 151 21 11 chrX 20051661 20051754 -142548176 - MLT1B LTR MaLR -11 379 286 384 77 0 0 chrX 20053600 20053652 -142546278 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 239 227 64 0 chrX 20054330 20054440 -142545490 - L1M4 LINE L1 -2915 3231 3115 26 64 0 0 chrX 20055427 20055474 -142544456 + AT_rich Low_complexity Low_complexity 1 47 0 2836 208 72 63 chrX 20057911 20059154 -142540776 + L1MDa LINE L1 2390 3646 -2894 1027 227 10 75 chrX 20059315 20059610 -142540320 + MLT2B1 LTR ERVL 1 276 -244 1925 110 11 18 chrX 20061843 20062116 -142537814 + AluSx SINE Alu 34 304 -8 225 274 71 19 chrX 20063277 20063489 -142536441 + L1MDa LINE L1 2331 2553 -3987 1004 266 78 56 chrX 20063500 20064228 -142535702 - L1M4 LINE L1 -1494 4652 3909 358 239 0 6 chrX 20064312 20064401 -142535529 - L1M4 LINE L1 -2265 3881 3797 22 70 0 0 chrX 20064799 20064842 -142535088 + AT_rich Low_complexity Low_complexity 1 43 0 389 212 0 0 chrX 20064994 20065060 -142534870 + MER2 DNA MER2_type 278 343 -2 279 275 0 0 chrX 20065075 20065166 -142534764 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 598 198 28 23 chrX 20065732 20065909 -142534021 - MER45R DNA AcHobo 0 1581 1404 436 173 87 0 chrX 20066040 20066144 -142533786 - MER45 DNA AcHobo -1387 194 82 1331 174 20 69 chrX 20066263 20066654 -142533276 - L1M4 LINE L1 -2272 3874 3503 285 265 152 15 chrX 20066790 20066922 -142533008 - MIR SINE MIR -17 245 96 22 80 0 0 chrX 20067643 20067693 -142532237 + AT_rich Low_complexity Low_complexity 1 50 0 1860 183 66 8 chrX 20068607 20069077 -142530853 + L1MB2 LINE L1 5673 6169 -2 838 207 25 5 chrX 20069302 20069500 -142530430 + Tigger1 DNA MER2_type 2216 2417 -1 1627 268 72 10 chrX 20069510 20070480 -142529450 + L1MDa LINE L1 2971 4000 -2540 228 86 0 0 chrX 20070498 20070533 -142529397 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2248 75 0 0 chrX 20070535 20070813 -142529117 - AluY SINE Alu -33 278 1 3213 93 8 41 chrX 20070936 20071114 -142528816 - THE1B-int LTR MaLR -1083 497 315 1782 163 0 11 chrX 20071114 20071391 -142528539 + AluSx SINE Alu 1 274 -38 873 29 0 0 chrX 20071392 20071496 -142528434 + (GAAA)n Simple_repeat Simple_repeat 1 104 0 3213 93 8 41 chrX 20071496 20071829 -142528101 - THE1B-int LTR MaLR -1264 316 1 2142 120 50 36 chrX 20071829 20072188 -142527742 - THE1B LTR MaLR 0 364 1 1887 170 3 3 chrX 20072188 20072565 -142527365 - L1P LINE L1 -1624 4522 4146 521 298 67 22 chrX 20072863 20073309 -142526621 + L1ME LINE L1 3463 3941 -2205 1197 264 40 14 chrX 20073310 20074095 -142525835 + L1ME LINE L1 4710 5514 -648 803 201 6 6 chrX 20074101 20074275 -142525655 + MER3 DNA MER1_type 6 179 -30 228 244 0 101 chrX 20074372 20074491 -142525439 + L1ME LINE L1 5634 5740 -424 7065 104 15 3 chrX 20074617 20076448 -142523482 + L1PA7 LINE L1 4305 6154 0 423 286 52 9 chrX 20076448 20076791 -142523139 + L1M4 LINE L1 3085 3442 -2704 1409 159 5 9 chrX 20076799 20077019 -142522911 + AluSx SINE Alu 1 219 -93 14760 50 0 1 chrX 20077119 20079075 -142520855 + L1P LINE L1 2000 3954 -2192 636 229 54 0 chrX 20079231 20079397 -142520533 - L1 LINE L1 -2439 3707 3533 342 0 0 0 chrX 20080883 20080921 -142519009 + (CA)n Simple_repeat Simple_repeat 1 38 0 2780 119 35 12 chrX 20081078 20081662 -142518268 - MER4E LTR ERV1 -4 762 1 257 316 0 0 chrX 20081948 20082005 -142517925 + L2 LINE L2 3255 3311 -2 1624 140 105 21 chrX 20082448 20082733 -142517197 - AluJb SINE Alu -3 309 1 4445 107 32 15 chrX 20084607 20085263 -142514667 - L1P3 LINE L1 -5124 751 79 425 83 0 14 chrX 20085263 20085335 -142514595 + (TTA)n Simple_repeat Simple_repeat 2 72 0 4445 107 32 15 chrX 20085335 20085416 -142514514 - L1P3 LINE L1 -5796 79 1 16167 95 6 1 chrX 20086063 20088500 -142511430 - L1P LINE L1 -813 5333 2885 1817 103 11 40 chrX 20089646 20089919 -142510011 - AluY SINE Alu -6 305 41 15601 58 1 3 chrX 20090757 20092818 -142507112 + L1P LINE L1 227 2282 -3864 21 0 0 0 chrX 20093044 20093065 -142506865 + AT_rich Low_complexity Low_complexity 1 21 0 246 366 40 5 chrX 20093377 20093601 -142506329 + HAL1 LINE L1 1430 1661 -846 280 284 0 11 chrX 20093723 20093818 -142506112 + (TA)n Simple_repeat Simple_repeat 2 95 0 26 50 0 0 chrX 20094012 20094052 -142505878 + AT_rich Low_complexity Low_complexity 1 40 0 221 219 0 0 chrX 20094387 20094428 -142505502 + (TG)n Simple_repeat Simple_repeat 2 42 0 2524 102 3 0 chrX 20094973 20095327 -142504603 - THE1A LTR MaLR 0 355 1 7194 106 9 5 chrX 20095327 20096379 -142503551 - THE1A-int LTR MaLR 0 1580 525 313 279 18 0 chrX 20096479 20096590 -142503340 - L1MD3 LINE L1 -155 7840 7728 4792 167 25 23 chrX 20096605 20097393 -142502537 - L1PA15 LINE L1 -13 6152 5367 1889 123 69 4 chrX 20097393 20097670 -142502260 - AluSq SINE Alu -12 301 7 4792 167 25 23 chrX 20097670 20097897 -142502033 - L1PA15 LINE L1 -798 5367 5142 1644 150 90 0 chrX 20097897 20098163 -142501767 - AluJb SINE Alu -16 296 7 4792 167 25 23 chrX 20098163 20098914 -142501016 - L1PA15 LINE L1 -1023 5142 4379 688 310 45 39 chrX 20099515 20099896 -142500034 + MER110 LTR ERV1 102 484 -7 960 202 120 13 chrX 20100001 20100234 -142499696 + MLT1F1 LTR MaLR 310 567 0 227 173 19 0 chrX 20100499 20100551 -142499379 + CT-rich Low_complexity Low_complexity 2 54 0 1374 208 72 14 chrX 20100551 20101019 -142498911 - AluJo SINE Alu 0 312 1 11304 96 9 13 chrX 20101432 20103016 -142496914 - THE1B-int LTR MaLR 0 1580 3 2261 136 8 22 chrX 20103017 20103386 -142496544 - THE1B LTR MaLR 0 364 1 720 84 0 0 chrX 20103623 20103718 -142496212 - AluSc SINE Alu -63 246 152 215 282 70 0 chrX 20104138 20104209 -142495721 - MIR3 SINE MIR -23 185 110 252 241 0 0 chrX 20104915 20104973 -142494957 + L3 LINE CR1 403 460 -1117 183 345 21 48 chrX 20105139 20105284 -142494646 + L3 LINE CR1 667 807 -770 515 301 122 21 chrX 20105527 20105953 -142493977 + L3 LINE CR1 1032 1500 -77 1106 143 0 12 chrX 20106148 20106316 -142493614 - AluSg SINE Alu -144 166 1 2156 94 0 17 chrX 20106784 20107099 -142492831 + AluY SINE Alu 1 310 0 2107 109 7 0 chrX 20107210 20107526 -142492404 + AluSp SINE Alu 2 319 0 280 262 66 49 chrX 20108781 20108903 -142491027 - MLT1F1 LTR MaLR -49 518 395 213 225 0 0 chrX 20109249 20109289 -142490641 + (CA)n Simple_repeat Simple_repeat 2 41 0 728 232 0 0 chrX 20109928 20110070 -142489860 + FRAM SINE Alu 5 146 -30 22 56 0 0 chrX 20110071 20110107 -142489823 + AT_rich Low_complexity Low_complexity 1 36 0 1518 194 0 0 chrX 20110177 20110429 -142489501 + AluJb SINE Alu 1 252 -60 751 206 24 30 chrX 20110854 20111019 -142488911 + FRAM SINE Alu 1 164 -2 24 32 0 0 chrX 20111019 20111050 -142488880 + AT_rich Low_complexity Low_complexity 1 31 0 620 112 43 3 chrX 20111420 20111622 -142488308 + LTR26 LTR ERV1 1 256 -347 893 146 0 14 chrX 20111622 20111766 -142488164 - FLAM_C SINE Alu 0 143 2 1964 183 0 55 chrX 20111767 20112149 -142487781 + LTR26 LTR ERV1 243 603 0 327 25 0 0 chrX 20112457 20112497 -142487433 + (TG)n Simple_repeat Simple_repeat 1 40 0 491 327 22 54 chrX 20112525 20112803 -142487127 + MLT1G LTR MaLR 16 284 -306 1840 173 36 0 chrX 20113670 20114006 -142485924 - MER7A DNA MER2_type 0 346 1 578 234 42 26 chrX 20114594 20114786 -142485144 + L1ME3 LINE L1 5959 6153 -9 2620 23 7 3 chrX 20114811 20115116 -142484814 + AluY SINE Alu 1 306 -5 203 0 0 36 chrX 20116110 20116138 -142483792 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1017 211 42 87 chrX 20117642 20118013 -142481917 + MLT2B1 LTR ERVL 5 364 -50 380 20 20 0 chrX 20118102 20118151 -142481779 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 2188 94 0 27 chrX 20118156 20118453 -142481477 - AluSg SINE Alu -21 289 1 238 0 26 51 chrX 20118453 20118492 -142481438 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 218 310 11 11 chrX 20118614 20118701 -142481229 + (TA)n Simple_repeat Simple_repeat 1 87 0 462 291 107 10 chrX 20118837 20119033 -142480897 - LTR33A LTR ERVL -157 366 152 1434 254 58 69 chrX 20119352 20119801 -142480129 + MER45B DNA AcHobo 1 444 -596 2135 133 3 0 chrX 20119803 20120112 -142479818 + AluSx SINE Alu 3 312 0 223 288 38 12 chrX 20121483 20121563 -142478367 - L2 LINE L2 -5 3308 3227 1170 228 62 46 chrX 20121799 20122167 -142477763 - MLT1A2 LTR MaLR 0 374 1 181 390 24 0 chrX 20122342 20122424 -142477506 - MIR SINE MIR -60 148 65 290 223 36 18 chrX 20122614 20122726 -142477204 + (TA)n Simple_repeat Simple_repeat 1 114 0 1053 236 16 42 chrX 20122729 20123038 -142476892 - L1MA9 LINE L1 -51 6261 5961 588 198 32 0 chrX 20123040 20123166 -142476764 + L1M2 LINE L1 5407 5536 -776 369 231 120 8 chrX 20123478 20123595 -142476335 + MER53 DNA DNA 1 130 -59 * 380 242 137 6 chrX 20123494 20123655 -142476275 - MER53 DNA DNA -7 182 1 289 220 0 0 chrX 20123836 20123895 -142476035 + L1MC5 LINE L1 6702 6760 -1201 650 217 0 109 chrX 20124174 20124404 -142475526 + L1MB8 LINE L1 2513 2717 -3429 2262 261 61 37 chrX 20126496 20127117 -142472813 + L1MB8 LINE L1 3497 4150 -1996 290 45 23 0 chrX 20127117 20127161 -142472769 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2262 261 61 37 chrX 20127161 20127483 -142472447 + L1MB8 LINE L1 4150 4463 -1683 1164 241 25 55 chrX 20127490 20127925 -142472005 + L1MB8 LINE L1 5757 6178 0 1364 270 42 48 chrX 20127946 20128657 -142471273 - L1M4 LINE L1 -912 5234 4528 352 118 101 109 chrX 20128668 20128787 -142471143 + L1M4 LINE L1 5514 5631 -553 3153 94 0 7 chrX 20128895 20129340 -142470590 - THE1B-int LTR MaLR -1138 442 1 2070 148 34 14 chrX 20129340 20129697 -142470233 - THE1B LTR MaLR 0 364 1 1631 260 66 51 chrX 20130427 20131798 -142468132 + L1ME1 LINE L1 4742 6142 -24 22 35 0 0 chrX 20132099 20132128 -142467802 + AT_rich Low_complexity Low_complexity 1 29 0 239 276 76 35 chrX 20132184 20132329 -142467601 + L1ME4a LINE L1 5527 5677 -444 * 1543 250 53 9 chrX 20132328 20132880 -142467050 - L1ME LINE L1 -396 5768 5190 1566 122 31 11 chrX 20132910 20133197 -142466733 - L1MA9 LINE L1 -27 6285 5993 323 208 65 48 chrX 20133228 20133396 -142466534 + L1ME4a LINE L1 5713 5883 -238 200 35 35 0 chrX 20133630 20133659 -142466271 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1470 159 21 46 chrX 20133663 20133946 -142465984 - AluJb SINE Alu -36 276 1 21 0 0 0 chrX 20134241 20134262 -142465668 + AT_rich Low_complexity Low_complexity 1 21 0 455 390 20 17 chrX 20134654 20134949 -142464981 + L2 LINE L2 2430 2725 -589 519 297 45 77 chrX 20136510 20136847 -142463083 + MLT1K LTR MaLR 162 483 -105 2192 172 6 94 chrX 20136847 20137359 -142462571 + LTR24 LTR ERV1 1 467 0 519 297 45 77 chrX 20137359 20137462 -142462468 + MLT1K LTR MaLR 483 588 0 1644 186 41 17 chrX 20138224 20138618 -142461312 - MER67C LTR ERV1 -243 271 1 35 71 0 0 chrX 20138618 20138688 -142461242 + AT_rich Low_complexity Low_complexity 1 70 0 2880 111 12 7 chrX 20139140 20139572 -142460358 - MER57B LTR ERV1 0 434 1 1047 209 0 47 chrX 20139603 20139838 -142460092 + AluJo SINE Alu 1 224 -88 30 59 0 0 chrX 20139965 20140016 -142459914 + AT_rich Low_complexity Low_complexity 1 51 0 2282 118 0 0 chrX 20140325 20140631 -142459299 - AluSc SINE Alu 0 309 4 2106 90 0 0 chrX 20142044 20142310 -142457620 - AluSg SINE Alu -11 299 34 3211 127 10 4 chrX 20143135 20143649 -142456281 - L1PB1 LINE L1 0 6151 5635 6819 68 9 7 chrX 20144635 20145748 -142454182 + L1PA8 LINE L1 5058 6172 0 236 366 65 0 chrX 20145806 20145929 -142454001 + MIR SINE MIR 23 153 -109 338 301 109 11 chrX 20145982 20146165 -142453765 - MIR SINE MIR -8 254 54 1866 97 0 0 chrX 20346611 20346848 -142253082 - AluSq SINE Alu -76 237 1 269 354 142 0 chrX 20346849 20346976 -142252954 + L2 LINE L2 2616 2760 -554 542 158 0 0 chrX 20347061 20347143 -142252787 + L2 LINE L2 3231 3312 -1 246 257 132 7 chrX 20348250 20348394 -142251536 + L1P5 LINE L1 5290 5451 -700 314 250 196 0 chrX 20348516 20348664 -142251266 + L1ME LINE L1 5672 5848 -273 2508 48 0 16 chrX 20348795 20349108 -142250822 + AluY SINE Alu 1 308 -3 667 85 23 100 chrX 20349547 20349677 -142250253 + FLAM_C SINE Alu 20 139 -4 250 191 0 0 chrX 20349677 20349740 -142250190 + L1MC4 LINE L1 6641 6703 -1339 264 30 0 0 chrX 20349745 20349778 -142250152 + (TA)n Simple_repeat Simple_repeat 2 34 0 1219 112 12 6 chrX 20349778 20349947 -142249983 + AluJb SINE Alu 121 290 -22 474 340 54 13 chrX 20350600 20350915 -142249015 + L1MC/D LINE L1 4937 5264 -882 841 185 76 54 chrX 20350980 20351164 -142248766 - MER58A DNA MER1_type -34 190 3 446 279 37 83 chrX 20351166 20351504 -142248426 + L1MC/D LINE L1 5259 5582 -539 250 106 21 0 chrX 20352505 20352552 -142247378 + L1MB7 LINE L1 6128 6175 -9 195 42 0 0 chrX 20352692 20352716 -142247214 + (GA)n Simple_repeat Simple_repeat 2 25 0 291 319 129 9 chrX 20353728 20353844 -142246086 - L2 LINE L2 -2 3270 3141 2285 100 0 0 chrX 20356550 20356850 -142243080 - AluSx SINE Alu -12 300 1 2415 78 3 3 chrX 20358250 20358557 -142241373 + AluSq SINE Alu 1 307 -6 1964 145 54 44 chrX 20358565 20358924 -142241006 + L1MB7 LINE L1 5738 6103 -81 1821 175 3 0 chrX 20358924 20359232 -142240698 + AluJb SINE Alu 1 309 -3 1964 145 54 44 chrX 20359232 20359278 -142240652 + L1MB7 LINE L1 6103 6147 -37 2258 106 0 0 chrX 20361052 20361344 -142238586 - AluSx SINE Alu -20 292 1 24 0 0 0 chrX 20361677 20361701 -142238229 + AT_rich Low_complexity Low_complexity 1 24 0 2235 108 3 7 chrX 20361911 20362216 -142237714 - AluSx SINE Alu -2 310 7 181 338 0 15 chrX 20362764 20362832 -142237098 + L2 LINE L2 3127 3193 -79 723 224 97 73 chrX 20363090 20363349 -142236581 - Charlie8 DNA MER1_type -2152 265 1 250 273 13 39 chrX 20363569 20363646 -142236284 + MIR3 SINE MIR 94 168 -40 329 209 0 11 chrX 20364161 20364179 -142235751 + (CA)n Simple_repeat Simple_repeat 2 19 -72 2396 69 0 13 chrX 20364179 20364483 -142235447 + AluSx SINE Alu 1 300 -12 329 209 0 11 chrX 20364483 20364555 -142235375 + (CA)n Simple_repeat Simple_repeat 19 91 0 703 110 0 0 chrX 20365697 20365797 -142234133 - HY3 scRNA scRNA -1 100 1 801 230 157 73 chrX 20366558 20367132 -142232798 + L1MC5 LINE L1 7260 7881 -80 22 35 0 0 chrX 20367433 20367462 -142232468 + AT_rich Low_complexity Low_complexity 1 29 0 2052 82 75 0 chrX 20368266 20368545 -142231385 - AluSq SINE Alu -13 300 1 2212 99 0 29 chrX 20370565 20370878 -142229052 + AluSg SINE Alu 1 304 -6 228 143 32 16 chrX 20371036 20371099 -142228831 - L1M4 LINE L1 -1116 5030 4967 245 169 13 52 chrX 20371100 20371177 -142228753 - L1M4 LINE L1 -1127 5019 4946 564 294 116 55 chrX 20371373 20371457 -142228473 - L1M4 LINE L1 -1459 4687 4610 2230 89 40 7 chrX 20371457 20371759 -142228171 - AluSx SINE Alu 0 312 1 564 294 116 55 chrX 20371759 20372259 -142227671 - L1M4 LINE L1 -1536 4610 4067 738 157 0 0 chrX 20372399 20372551 -142227379 + FLAM_C SINE Alu 1 152 0 1955 145 0 10 chrX 20373332 20373635 -142226295 + AluJb SINE Alu 13 312 0 1807 167 3 7 chrX 20373671 20373964 -142225966 - AluSx SINE Alu -20 292 1 1921 85 4 4 chrX 20374008 20374291 -142225639 + AluSq SINE Alu 39 321 0 1904 105 12 53 chrX 20375205 20375528 -142224402 - AluJb SINE Alu 0 312 3 347 246 9 8 chrX 20375530 20375655 -142224275 + L1MC4 LINE L1 1998 6985 -1337 2424 37 0 20 chrX 20375680 20375980 -142223950 - AluY SINE Alu -17 294 1 808 238 9 14 chrX 20376053 20376263 -142223667 - MER63A DNA MER1_type 0 210 2 339 320 129 7 chrX 20376372 20376519 -142223411 + MLT1J LTR MaLR 250 414 -97 840 163 50 19 chrX 20376782 20376942 -142222988 - FRAM SINE Alu -8 168 4 378 275 128 47 chrX 20376959 20377347 -142222583 - L1MC4a LINE L1 -311 5810 5448 1926 114 10 24 chrX 20378079 20378377 -142221553 - AluSx SINE Alu -18 294 1 1892 167 3 0 chrX 20378387 20378692 -142221238 - AluJb SINE Alu -5 307 2 582 156 16 62 chrX 20378692 20378809 -142221121 - MER20 DNA MER1_type -22 197 85 21 36 0 0 chrX 20379308 20379336 -142220594 + AT_rich Low_complexity Low_complexity 1 28 0 855 106 21 42 chrX 20379437 20379579 -142220351 - AluSq/x SINE Alu -174 139 1 1869 170 3 0 chrX 20379589 20379895 -142220035 - AluJb SINE Alu -4 308 2 620 147 16 62 chrX 20379895 20380013 -142219917 - MER20 DNA MER1_type -22 197 84 1065 45 0 15 chrX 20382638 20382771 -142217159 - AluSg/x SINE Alu -15 297 167 2159 109 0 3 chrX 20382771 20383064 -142216866 + AluSx SINE Alu 1 292 -20 317 259 86 50 chrX 20384032 20384252 -142215678 - L1MDa LINE L1 -3892 2648 2421 267 265 69 10 chrX 20384267 20384369 -142215561 - HAL1 LINE L1 -147 2360 2253 256 132 0 0 chrX 20384553 20384591 -142215339 + MLT2F LTR ERVL 619 656 -7 22 0 0 0 chrX 20384778 20384800 -142215130 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chrX 20385261 20385307 -142214623 + AT_rich Low_complexity Low_complexity 1 46 0 30 0 0 0 chrX 20387998 20388028 -142211902 + AT_rich Low_complexity Low_complexity 1 30 0 286 265 143 37 chrX 20388047 20388292 -142211638 - L1ME4a LINE L1 -57 6064 5794 472 284 55 70 chrX 20388395 20388454 -142211476 + MIR SINE MIR 8 66 -196 2330 33 39 43 chrX 20388454 20388759 -142211171 - AluY SINE Alu -7 304 1 472 284 55 70 chrX 20388759 20388956 -142210974 + MIR SINE MIR 66 260 -2 433 110 110 0 chrX 20389340 20389413 -142210517 + L1MC1 LINE L1 6107 6187 -146 418 45 136 0 chrX 20389416 20389482 -142210448 + L1MC1 LINE L1 6259 6333 0 1978 78 3 54 chrX 20389795 20390089 -142209841 - AluY SINE Alu 0 311 33 2129 98 4 0 chrX 20390089 20390366 -142209564 - AluSq SINE Alu -35 278 1 479 304 37 5 chrX 20390379 20390596 -142209334 - L1ME4a LINE L1 -298 5823 5600 217 345 112 28 chrX 20391362 20391611 -142208319 + L2 LINE L2 2384 2653 -661 2276 81 3 0 chrX 20391834 20392150 -142207780 + AluSp SINE Alu 1 317 0 366 244 24 0 chrX 20392187 20392269 -142207661 + MIR SINE MIR 63 146 -116 21 36 0 0 chrX 20393010 20393038 -142206892 + AT_rich Low_complexity Low_complexity 1 28 0 450 157 0 0 chrX 20393150 20393233 -142206697 + GA-rich Low_complexity Low_complexity 1 83 0 26 64 0 0 chrX 20393752 20393799 -142206131 + AT_rich Low_complexity Low_complexity 1 47 0 990 214 34 40 chrX 20393841 20393979 -142205951 - L1M4 LINE L1 -2718 3428 3291 1954 150 0 3 chrX 20393979 20394273 -142205657 - AluJb SINE Alu -19 293 1 990 214 34 40 chrX 20394273 20394342 -142205588 - L1M4 LINE L1 -2855 3291 3223 1975 119 18 0 chrX 20394342 20394671 -142205259 - AluSx SINE Alu 0 334 1 990 214 34 40 chrX 20394671 20394811 -142205119 - L1M4 LINE L1 -2923 3223 3081 1013 207 54 10 chrX 20395522 20395725 -142204205 + MER58C DNA MER1_type 4 215 0 964 161 157 80 chrX 20395732 20396031 -142203899 - MER33 DNA MER1_type 0 324 3 22 0 0 0 chrX 20396049 20396071 -142203859 + AT_rich Low_complexity Low_complexity 1 22 0 716 132 9 0 chrX 20396878 20396984 -142202946 - FLAM_A SINE Alu -35 107 1 1869 166 0 10 chrX 20397072 20397367 -142202563 - AluJo SINE Alu -20 292 1 551 242 149 12 chrX 20397371 20397532 -142202398 - MER5A DNA MER1_type 0 189 7 370 256 91 8 chrX 20397538 20397659 -142202271 - MIR SINE MIR -55 207 77 477 278 172 0 chrX 20398114 20398265 -142201665 + MER5A DNA MER1_type 13 189 0 399 175 170 37 chrX 20399210 20399285 -142200645 - L1ME2 LINE L1 -1 6163 6099 192 40 0 0 chrX 20399285 20399310 -142200620 + (TA)n Simple_repeat Simple_repeat 2 26 0 399 175 170 37 chrX 20399310 20399493 -142200437 - L1ME2 LINE L1 -65 6099 5843 922 187 41 0 chrX 20399617 20399788 -142200142 + MER5B DNA MER1_type 1 178 0 21 95 0 0 chrX 20400344 20400407 -142199523 + AT_rich Low_complexity Low_complexity 1 63 0 2113 127 0 3 chrX 20400605 20400905 -142199025 - AluSx SINE Alu -13 299 1 28 48 0 0 chrX 20401593 20401635 -142198295 + AT_rich Low_complexity Low_complexity 1 42 0 500 146 0 10 chrX 20401641 20401737 -142198193 + L1MA8 LINE L1 6192 6286 -5 583 251 112 78 chrX 20401854 20402212 -142197718 - MLT1I LTR MaLR 0 409 40 4187 94 39 93 chrX 20402236 20402629 -142197301 - MER4A LTR ERV1 0 664 324 2180 98 3 49 chrX 20402629 20402955 -142196975 + AluSq SINE Alu 1 311 -2 4187 94 39 93 chrX 20402955 20403263 -142196667 - MER4A LTR ERV1 -340 324 1 1835 158 6 19 chrX 20403283 20403599 -142196331 - AluJo SINE Alu 0 312 1 408 294 196 8 chrX 20404724 20404979 -142194951 - L1MDa LINE L1 -4594 1535 1233 608 244 108 112 chrX 20404990 20405444 -142194486 - LTR33A LTR ERVL -6 517 66 791 244 42 48 chrX 20405538 20405591 -142194339 - L1MDa LINE L1 -4886 1233 1181 1610 143 63 66 chrX 20405591 20405892 -142194038 - AluJo SINE Alu -12 300 1 791 244 42 48 chrX 20405892 20406110 -142193820 - L1MDa LINE L1 -4938 1181 962 2404 92 0 3 chrX 20406110 20406416 -142193514 - AluSx SINE Alu -7 305 1 791 244 42 48 chrX 20406416 20406479 -142193451 - L1MDa LINE L1 -5157 962 900 240 125 0 0 chrX 20406486 20406518 -142193412 - U2 snRNA snRNA -156 32 1 711 269 128 12 chrX 20406522 20406857 -142193073 - L1MDa LINE L1 -5192 927 554 603 307 4 70 chrX 20406886 20406922 -142193008 + L3 LINE CR1 980 1017 -560 2257 242 42 44 chrX 20406922 20407516 -142192414 + MLT1E LTR MaLR 1 593 0 603 307 4 70 chrX 20407516 20407723 -142192207 + L3 LINE CR1 1017 1207 -370 2817 169 54 18 chrX 20458024 20458528 -142141402 - MER21B LTR ERV1 -1 862 341 617 113 21 0 chrX 20458522 20458619 -142141311 - MER21B LTR ERV1 -635 228 130 * 445 294 77 14 chrX 20458728 20458871 -142141059 + L2 LINE L2 3121 3272 0 488 177 262 0 chrX 20459864 20460005 -142139925 + Charlie4 DNA MER1_type 1 178 -1783 653 232 52 31 chrX 20460007 20460201 -142139729 + MIR SINE MIR 16 213 -49 3168 131 8 23 chrX 20460914 20461388 -142138542 - MLT1C LTR MaLR 0 467 1 953 204 5 10 chrX 20462775 20462971 -142136959 - MER58A DNA MER1_type 0 224 30 250 323 0 0 chrX 20464430 20464529 -142135401 + GA-rich Low_complexity Low_complexity 3 101 0 358 263 53 32 chrX 20464831 20464926 -142135004 + MER91A DNA MER1_type 56 152 -44 2361 102 3 0 chrX 20464934 20465237 -142134693 - AluSq SINE Alu -9 304 1 210 271 0 43 chrX 20465317 20465387 -142134543 - L2 LINE L2 -21 3292 3226 1122 141 11 31 chrX 20465604 20465795 -142134135 + MER20 DNA MER1_type 33 219 0 920 241 68 65 chrX 20465832 20466010 -142133920 + LTR16C LTR ERVL 167 348 -143 1901 152 3 16 chrX 20466010 20466325 -142133605 - AluJb SINE Alu 0 312 2 920 241 68 65 chrX 20466325 20466470 -142133460 + LTR16C LTR ERVL 348 491 0 433 356 79 0 chrX 20466470 20466686 -142133244 + L2 LINE L2 3040 3272 0 220 304 319 11 chrX 20467045 20467236 -142132694 - MIR SINE MIR -6 256 7 36 23 0 0 chrX 20467346 20467389 -142132541 + AT_rich Low_complexity Low_complexity 1 43 0 2298 155 8 0 chrX 20467405 20467759 -142132171 - L1PB1 LINE L1 -13 6138 5782 233 200 0 0 chrX 20467759 20467814 -142132116 + L1MC4 LINE L1 6649 6703 -1339 216 163 0 0 chrX 20467816 20467859 -142132071 + (TA)n Simple_repeat Simple_repeat 2 44 0 250 48 48 0 chrX 20467866 20467908 -142132022 - LTR66 LTR ERVL -169 441 398 244 73 0 0 chrX 20467880 20467921 -142132009 + LTR66 LTR ERVL 400 440 -170 * 15243 179 9 18 chrX 20467933 20471683 -142128247 - L1P5 LINE L1 -376 6491 2778 7697 189 151 7 chrX 20471688 20473548 -142126382 - L1P5 LINE L1 -4602 2261 135 532 232 45 13 chrX 20473763 20473918 -142126012 - MER104 DNA Tc2 -14 166 7 1549 189 89 26 chrX 20474120 20474500 -142125430 + MLT1G LTR MaLR 13 416 -174 258 244 378 5 chrX 20474561 20474754 -142125176 - MLT1J2 LTR MaLR -41 409 145 658 205 305 4 chrX 20474756 20475005 -142124925 - MER5C DNA MER1_type 0 324 1 344 220 33 22 chrX 20475020 20475111 -142124819 - MLT1J1 LTR MaLR -311 135 44 279 0 0 0 chrX 20475240 20475271 -142124659 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2052 98 33 7 chrX 20475274 20475549 -142124381 - AluSx SINE Alu -30 282 1 704 265 152 81 chrX 20476115 20476537 -142123393 + LTR16A1 LTR ERVL 5 456 -1 184 280 0 0 chrX 20477185 20477235 -142122695 - MIR SINE MIR -18 244 195 185 318 53 40 chrX 20477289 20477440 -142122490 + L2 LINE L2 2429 2581 -733 4972 180 24 15 chrX 20477453 20478053 -142121877 + L1MB7 LINE L1 4613 5206 -978 2717 87 58 0 chrX 20478053 20478397 -142121533 + THE1B LTR MaLR 1 364 0 4972 180 24 15 chrX 20478397 20479335 -142120595 + L1MB7 LINE L1 5206 6161 -23 536 321 99 25 chrX 20480707 20481031 -142118899 - L1ME3A LINE L1 -312 5858 5511 458 259 139 24 chrX 20481590 20481756 -142118174 + MIR SINE MIR 8 192 -70 892 237 69 103 chrX 20481877 20482354 -142117576 + MLT1L LTR MaLR 145 605 -10 281 289 31 10 chrX 20482485 20482582 -142117348 + MIR SINE MIR 112 210 -52 2332 90 0 7 chrX 20482980 20483280 -142116650 - AluSx SINE Alu -9 303 6 1193 240 61 6 chrX 20483691 20484004 -142115926 - LTR16C LTR ERVL -2 489 160 381 138 0 0 chrX 20485227 20485285 -142114645 + MER116 DNA Mariner 22 79 -1 236 229 181 19 chrX 20488426 20488531 -142111399 - MIR SINE MIR -78 184 63 639 248 141 62 chrX 20490857 20491062 -142108868 + MIR SINE MIR 2 231 -31 2126 108 0 14 chrX 20491062 20491385 -142108545 + AluY SINE Alu 1 319 0 639 248 141 62 chrX 20491385 20491420 -142108510 + MIR SINE MIR 231 262 0 297 175 16 48 chrX 20492172 20492235 -142107695 - L2 LINE L2 -19 3253 3193 890 248 5 36 chrX 20492272 20492494 -142107436 + MIR SINE MIR 47 261 -1 291 209 47 35 chrX 20492615 20492701 -142107229 + MER103 DNA DNA 72 158 -8 226 313 50 0 chrX 20492904 20492984 -142106946 + MIR SINE MIR 118 201 -61 1444 182 9 0 chrX 20493323 20493543 -142106387 - MER58A DNA MER1_type 0 224 3 218 250 87 33 chrX 20493998 20494090 -142105840 + MIR3 SINE MIR 105 201 -7 317 371 0 32 chrX 20494201 20494325 -142105605 - MIR SINE MIR -142 120 1 25 31 0 0 chrX 20495067 20495099 -142104831 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chrX 20497209 20497229 -142102701 + (A)n Simple_repeat Simple_repeat 1 20 0 508 265 48 12 chrX 20497479 20497648 -142102282 + MIR SINE MIR 14 184 -62 228 298 71 12 chrX 20497771 20497855 -142102075 - MIR SINE MIR -64 144 56 595 223 90 18 chrX 20498328 20498494 -142101436 - MER104 DNA MER2_type -2 178 1 255 103 0 0 chrX 20500401 20500440 -142099490 + (ATTG)n Simple_repeat Simple_repeat 1 39 0 201 147 0 0 chrX 20500440 20500474 -142099456 + (TG)n Simple_repeat Simple_repeat 1 34 0 801 199 25 6 chrX 20503083 20503244 -142096686 + MIR SINE MIR 57 220 -42 888 250 94 24 chrX 20505002 20505290 -142094640 - LTR16B LTR ERVL -155 309 2 227 271 0 0 chrX 20507238 20507286 -142092644 - L2 LINE L2 -3 3310 3263 275 280 265 10 chrX 20507289 20507489 -142092441 - MIR SINE MIR -10 252 2 189 176 0 0 chrX 20510575 20510609 -142089321 - MER5C DNA MER1_type -290 34 1 1916 177 68 11 chrX 20510789 20511140 -142088790 - MLT1A2 LTR MaLR 0 374 4 735 244 4 9 chrX 20511816 20512041 -142087889 + L1M4 LINE L1 2430 2653 -3493 346 283 13 0 chrX 20512041 20512200 -142087730 + (TA)n Simple_repeat Simple_repeat 2 162 0 332 216 11 60 chrX 20512159 20512344 -142087586 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 * 238 289 26 6 chrX 20512344 20512500 -142087430 + (TA)n Simple_repeat Simple_repeat 1 159 0 1920 172 32 34 chrX 20512501 20512908 -142087022 + L1M4 LINE L1 2645 3050 -3096 239 279 58 78 chrX 20513280 20513434 -142086496 + MIR SINE MIR 111 261 -1 232 180 16 33 chrX 20513467 20513528 -142086402 - L1ME LINE L1 -217 5904 5845 1178 164 9 32 chrX 20514337 20514556 -142085374 + MER20 DNA MER1_type 6 219 0 572 312 34 21 chrX 20514958 20515195 -142084735 - MIR SINE MIR -12 250 11 231 307 118 63 chrX 20515395 20515522 -142084408 - L2 LINE L2 0 3272 3139 395 83 17 0 chrX 20515607 20515667 -142084263 + (GA)n Simple_repeat Simple_repeat 1 61 0 263 298 194 21 chrX 20516724 20516915 -142083015 - L2 LINE L2 0 3272 3049 286 283 120 0 chrX 20516995 20517087 -142082843 + MIR SINE MIR 49 151 -111 744 217 25 32 chrX 20517095 20517252 -142082678 + MER20 DNA MER1_type 14 169 -50 295 198 136 0 chrX 20517709 20517790 -142082140 + MIR SINE MIR 62 153 -109 260 172 17 0 chrX 20519462 20519520 -142080410 + (CA)n Simple_repeat Simple_repeat 2 60 0 607 333 42 62 chrX 20520303 20520556 -142079374 - L3 LINE CR1 -761 816 572 1036 199 5 26 chrX 20520556 20520747 -142079183 - MER5A DNA MER1_type -2 187 1 607 333 42 62 chrX 20520747 20520893 -142079037 - L3 LINE CR1 -1005 572 425 629 267 107 10 chrX 20520908 20521114 -142078816 - MIR SINE MIR 0 262 37 265 278 0 0 chrX 20521310 20521364 -142078566 + MER58 DNA MER1_type 1 54 -332 392 107 0 0 chrX 20521374 20521430 -142078500 - L1MD2 LINE L1 -22 6337 6282 1881 161 10 7 chrX 20521685 20521984 -142077946 - AluJb SINE Alu -12 300 1 241 242 155 68 chrX 20522155 20522316 -142077614 - MER5B DNA MER1_type -3 175 1 209 224 59 59 chrX 20522667 20522752 -142077178 - L3 LINE CR1 -1 1576 1492 318 264 73 18 chrX 20523279 20523315 -142076615 - MIR3 SINE MIR -12 196 163 2728 202 79 8 chrX 20523315 20523821 -142076109 - MLT1F LTR MaLR 0 542 1 318 264 73 18 chrX 20523821 20523894 -142076036 - MIR3 SINE MIR -45 163 81 2097 118 13 0 chrX 20524280 20524626 -142075304 - AluSx SINE Alu 0 350 1 180 302 0 0 chrX 20525773 20525826 -142074104 + L2 LINE L2 2706 2758 -556 558 324 37 89 chrX 20525941 20526290 -142073640 + L2 LINE L2 2912 3242 -30 2967 79 25 3 chrX 20526396 20526763 -142073167 - THE1C LTR MaLR 0 375 1 784 148 0 0 chrX 20526815 20526930 -142073000 + L1PB4 LINE L1 6039 6153 -3 433 285 134 0 chrX 20527288 20527460 -142072470 - MIR SINE MIR -24 238 44 946 173 22 76 chrX 20527941 20528166 -142071764 - MER20 DNA MER1_type -5 214 2 486 245 174 0 chrX 20528181 20528336 -142071594 + MER5A DNA MER1_type 7 188 -1 814 153 80 25 chrX 20528344 20528507 -142071423 - MER5B DNA MER1_type -2 176 5 180 77 0 0 chrX 20528534 20528560 -142071370 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 342 0 0 0 chrX 20528559 20528597 -142071333 + (CA)n Simple_repeat Simple_repeat 1 38 0 236 297 69 21 chrX 20528969 20529114 -142070816 + L1ME LINE L1 5267 5418 -2390 349 250 31 21 chrX 20529376 20529472 -142070458 + L1ME LINE L1 5710 5806 -315 322 290 11 0 chrX 20529593 20529686 -142070244 - MER103 DNA DNA -60 106 13 379 161 48 13 chrX 20529847 20529932 -142069998 + L1ME3 LINE L1 6070 6163 -1 2924 74 14 19 chrX 20530106 20530472 -142069458 + THE1B LTR MaLR 1 364 0 430 269 0 0 chrX 20530531 20530624 -142069306 + MIR SINE MIR 56 148 -60 21 0 0 0 chrX 20531393 20531414 -142068516 + AT_rich Low_complexity Low_complexity 1 21 0 191 111 0 0 chrX 20533011 20533038 -142066892 + L2 LINE L2 3263 3289 -24 2575 130 18 3 chrX 20533301 20533693 -142066237 - L1PB3 LINE L1 -3 6151 5754 279 356 69 0 chrX 20534330 20534431 -142065499 - L2 LINE L2 -18 3254 3147 1417 163 18 3 chrX 20534756 20535023 -142064907 + L1MB1 LINE L1 5712 5978 -190 531 156 31 0 chrX 20535031 20535127 -142064803 + L1MB1 LINE L1 6067 6165 -3 293 305 17 76 chrX 20535246 20535364 -142064566 + MIR SINE MIR 12 122 -140 337 209 10 11 chrX 20535490 20535577 -142064353 - MLT1J LTR MaLR -302 164 63 1271 231 147 48 chrX 20535853 20536351 -142063579 - MLT1H LTR MaLR -2 547 1 2245 140 67 45 chrX 20536613 20536836 -142063094 + L1MA9 LINE L1 5850 6067 -245 2553 112 27 6 chrX 20536836 20537201 -142062729 - THE1C LTR MaLR -1 374 2 2245 140 67 45 chrX 20537201 20537426 -142062504 + L1MA9 LINE L1 6067 6308 -4 22 35 0 0 chrX 20539091 20539120 -142060810 + AT_rich Low_complexity Low_complexity 1 29 0 271 284 0 0 chrX 20539520 20539587 -142060343 - L2 LINE L2 -5 3267 3201 207 0 0 0 chrX 20541260 20541283 -142058647 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 202 158 105 0 chrX 20741572 20741610 -141858320 + MER5A DNA MER1_type 127 168 -21 520 291 24 12 chrX 20741635 20741800 -141858130 - MER5B DNA MER1_type 0 178 12 24 0 0 0 chrX 20742737 20742761 -141857169 + AT_rich Low_complexity Low_complexity 1 24 0 2388 21 80 0 chrX 20742911 20743236 -141856694 - AluY SINE Alu 0 348 1 324 271 0 0 chrX 20744473 20744543 -141855387 + MER3 DNA MER1_type 5 74 -135 460 239 39 8 chrX 20744593 20744723 -141855207 + MER3 DNA MER1_type 76 209 0 428 267 18 11 chrX 20744744 20744881 -141855049 - MER5A DNA MER1_type -42 136 9 319 278 28 60 chrX 20745128 20745179 -141854751 + L1ME3A LINE L1 4476 4527 -1619 1127 30 0 0 chrX 20745179 20745311 -141854619 + L1PA3 LINE L1 6021 6152 -3 319 278 28 60 chrX 20745311 20745475 -141854455 + L1ME3A LINE L1 4527 4684 -1462 383 293 117 11 chrX 20746002 20746268 -141853662 + L1ME3A LINE L1 5318 5611 -559 1385 209 76 7 chrX 20746325 20746627 -141853303 - MER58B DNA MER1_type -15 326 4 203 233 178 0 chrX 20746639 20746712 -141853218 + MER5A DNA MER1_type 9 94 -95 228 160 80 0 chrX 20746832 20746882 -141853048 + L1ME3A LINE L1 5696 5749 -610 897 193 12 6 chrX 20746882 20747053 -141852877 + FRAM SINE Alu 1 171 -5 321 229 236 0 chrX 20747057 20747214 -141852716 + L1ME3A LINE L1 5745 5938 -232 2771 257 73 40 chrX 20747302 20748487 -141851443 + L1ME1 LINE L1 50 1274 -5122 * 2865 270 40 20 chrX 20748460 20749927 -141850003 + L1ME1 LINE L1 2064 3529 -2686 732 233 102 86 chrX 20749933 20750388 -141849542 + L1ME1 LINE L1 5752 6191 -44 207 0 0 0 chrX 20750335 20750358 -141849572 + (TA)n Simple_repeat Simple_repeat 2 24 0 457 233 93 13 chrX 20750358 20750433 -141849497 + L1MA10 LINE L1 6238 6332 -2 339 177 31 0 chrX 20750610 20750706 -141849224 + (TA)n Simple_repeat Simple_repeat 1 99 0 352 248 51 25 chrX 20750765 20750887 -141849043 - MLT1I LTR MaLR -255 154 31 28 29 0 0 chrX 20751030 20751065 -141848865 + AT_rich Low_complexity Low_complexity 1 35 0 239 378 15 25 chrX 20751382 20751583 -141848347 - MLT1K LTR MaLR -287 301 103 204 40 0 0 chrX 20751681 20751706 -141848224 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 2306 108 22 25 chrX 20752164 20752526 -141847404 + THE1B LTR MaLR 1 361 -3 10631 91 48 3 chrX 20752529 20754042 -141845888 + THE1B-int LTR MaLR 1 1580 0 653 88 53 79 chrX 20754042 20754156 -141845774 + THE1B LTR MaLR 1 111 -264 26 0 0 0 chrX 20754859 20754885 -141845045 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chrX 20755147 20755176 -141844754 + AT_rich Low_complexity Low_complexity 1 29 0 189 107 0 0 chrX 20756179 20756207 -141843723 + (CA)n Simple_repeat Simple_repeat 1 28 0 351 336 73 12 chrX 20756309 20756568 -141843362 - L1MC/D LINE L1 -2029 5779 5505 3145 129 13 4 chrX 20756654 20757126 -141842804 + LOR1a LTR ERV1 1 476 -21 1251 213 14 10 chrX 20757127 20757418 -141842512 + MER31-int LTR ERV1 949 1240 -3696 2049 232 33 108 chrX 20757869 20758879 -141841051 + MER31-int LTR ERV1 2477 3419 -1517 568 167 0 0 chrX 20759023 20759119 -141840811 - L1MA9 LINE L1 -411 5901 5806 435 353 99 60 chrX 20759129 20759616 -141840314 + L1PBb LINE L1 11 516 -6333 242 340 24 48 chrX 20759830 20760039 -141839891 + L1PBb LINE L1 777 980 -5869 450 288 0 0 chrX 20760484 20760616 -141839314 + L1PBb LINE L1 1335 1466 -5383 2680 143 40 6 chrX 20760616 20761085 -141838845 - L1M2 LINE L1 -574 5738 5254 7260 164 44 22 chrX 20761098 20761554 -141838376 + L1 LINE L1 3749 4193 -1953 306 0 0 0 chrX 20761554 20761588 -141838342 + (TA)n Simple_repeat Simple_repeat 1 34 0 7260 164 44 22 chrX 20761588 20762590 -141837340 + L1 LINE L1 4193 5239 -907 24 67 0 0 chrX 20763323 20763368 -141836562 + AT_rich Low_complexity Low_complexity 1 45 0 703 81 0 10 chrX 20764806 20764905 -141835025 + MER4A LTR ERV1 1 98 -566 1919 103 157 85 chrX 20764905 20765282 -141834648 + MER4A LTR ERV1 261 664 0 4769 70 46 0 chrX 20765467 20766098 -141833832 - PABL_A LTR ERV1 0 660 1 31280 93 20 15 chrX 20766098 20771087 -141828843 - PABL_A-int LTR ERV1 0 5015 1 5019 74 15 0 chrX 20771087 20771737 -141828193 - PABL_A LTR ERV1 0 660 1 592 233 37 60 chrX 20772165 20772274 -141827656 - L1MC5 LINE L1 -49 7912 7809 829 256 33 14 chrX 20772274 20772489 -141827441 + MER20 DNA MER1_type 1 219 0 592 233 37 60 chrX 20772489 20772594 -141827336 - L1MC5 LINE L1 -152 7809 7703 244 296 95 4 chrX 20772699 20772807 -141827123 + LTR33A LTR ERVL 39 162 -359 1535 235 34 20 chrX 20772923 20773332 -141826598 + MLT1C LTR MaLR 53 467 0 416 317 124 15 chrX 20773332 20773592 -141826338 + LTR33A LTR ERVL 225 513 -10 1293 193 5 0 chrX 20773869 20774087 -141825843 - MER58A DNA MER1_type -2 222 4 21 36 0 0 chrX 20775427 20775455 -141824475 + AT_rich Low_complexity Low_complexity 1 28 0 453 159 0 0 chrX 20776337 20776406 -141823524 - Tigger1 DNA MER2_type -1 2417 2349 5013 138 10 2 chrX 20776406 20777200 -141822730 - Tigger1 DNA MER2_type -190 2228 1429 9939 224 19 70 chrX 20777213 20781731 -141818199 + L1M2 LINE L1 28 4308 -2540 1963 91 36 4 chrX 20782216 20782517 -141817413 - AluY SINE Alu 0 310 1 252 256 68 45 chrX 20782853 20782986 -141816944 + L1M4 LINE L1 2576 2711 -3435 339 280 67 17 chrX 20783115 20783415 -141816515 + L1M4 LINE L1 2950 3264 -2882 1821 184 16 16 chrX 20783742 20784115 -141815815 - L1MB1 LINE L1 0 6168 5793 384 22 0 0 chrX 20784115 20784160 -141815770 + (TC)n Simple_repeat Simple_repeat 2 46 0 1821 184 16 16 chrX 20784160 20784173 -141815757 - L1MB1 LINE L1 -374 5794 5782 206 242 15 0 chrX 20784173 20784239 -141815691 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 988 206 5 5 chrX 20784240 20784439 -141815491 - L1MB1 LINE L1 -375 5793 5595 239 279 23 0 chrX 20784731 20784817 -141815113 + L1M2 LINE L1 4607 4694 -2154 272 139 35 26 chrX 20784825 20784940 -141814990 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 337 286 104 0 chrX 20784959 20785141 -141814789 + L1M2 LINE L1 4725 4925 -1923 502 321 151 50 chrX 20785206 20786089 -141813841 + L1M2 LINE L1 4975 5954 -894 1134 288 140 18 chrX 20786099 20786762 -141813168 + L1MC4a LINE L1 5273 6016 -1792 1964 113 78 0 chrX 20786765 20787049 -141812881 + AluSx SINE Alu 3 308 -4 1105 287 106 40 chrX 20787362 20788263 -141811667 + L1MC4 LINE L1 6409 7493 -395 452 232 46 20 chrX 20788232 20788383 -141811547 + L1MC5 LINE L1 7293 7447 -514 * 227 254 82 25 chrX 20788541 20788663 -141811267 + L1MC4 LINE L1 7759 7887 -155 216 86 0 0 chrX 20788676 20788711 -141811219 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chrX 20790070 20790091 -141809839 + AT_rich Low_complexity Low_complexity 1 21 0 353 320 79 108 chrX 20791120 20791473 -141808457 - L2 LINE L2 0 3272 2930 433 277 123 36 chrX 20792484 20792679 -141807251 - MIR SINE MIR 0 262 51 21 36 0 0 chrX 20794157 20794185 -141805745 + AT_rich Low_complexity Low_complexity 1 28 0 234 210 20 50 chrX 20795685 20795785 -141804145 + T-rich Low_complexity Low_complexity 3 99 0 23 33 0 0 chrX 20795865 20795895 -141804035 + AT_rich Low_complexity Low_complexity 1 30 0 3877 150 51 17 chrX 20797878 20798342 -141801588 + MER50 LTR ERV1 1 497 -237 2029 135 41 36 chrX 20798342 20798704 -141801226 - THE1B LTR MaLR 0 364 1 3877 150 51 17 chrX 20798704 20798927 -141801003 + MER50 LTR ERV1 497 711 -23 222 333 48 80 chrX 20798960 20799272 -141800658 - L2 LINE L2 -53 3219 2918 216 0 0 0 chrX 20799429 20799453 -141800477 + (T)n Simple_repeat Simple_repeat 1 24 0 181 50 25 50 chrX 20799471 20799511 -141800419 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 2183 114 0 0 chrX 20799770 20800067 -141799863 - AluSx SINE Alu -15 297 1 1082 178 27 13 chrX 20800186 20800411 -141799519 + L1MA9 LINE L1 6044 6271 -41 261 0 0 0 chrX 20800411 20800440 -141799490 + (TA)n Simple_repeat Simple_repeat 1 29 0 436 299 16 16 chrX 20801444 20801571 -141798359 + L2 LINE L2 3185 3311 -2 240 354 27 7 chrX 20801609 20801756 -141798174 - MIR SINE MIR -45 217 68 1516 238 159 13 chrX 20802080 20802626 -141797304 - MLT1E2 LTR MaLR 0 626 1 233 260 91 0 chrX 20803563 20803640 -141796290 - MLT1J2 LTR MaLR -52 398 315 3679 71 45 4 chrX 20803845 20804342 -141795588 + L1PA11 LINE L1 5649 6169 -5 243 0 0 0 chrX 20804342 20804369 -141795561 + (CTAA)n Simple_repeat Simple_repeat 3 29 0 276 30 0 0 chrX 20804505 20804538 -141795392 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 423 265 56 133 chrX 20804558 20805045 -141794885 - MLT1H LTR MaLR -109 446 2 814 225 0 11 chrX 20805415 20805578 -141794352 - L1MA4A LINE L1 -433 5870 5708 774 42 0 0 chrX 20805578 20805669 -141794261 + L1PA5 LINE L1 6052 6147 -7 814 225 0 11 chrX 20805669 20805687 -141794243 - L1MA4A LINE L1 -595 5708 5691 25 0 0 68 chrX 20805998 20806042 -141793888 + AT_rich Low_complexity Low_complexity 1 41 0 431 264 0 0 chrX 20806559 20806665 -141793265 - MIR SINE MIR 0 262 157 337 284 64 0 chrX 20806665 20806774 -141793156 - MER69 DNA AcHobo -1 2525 2410 4021 137 12 58 chrX 20806781 20807545 -141792385 - L1PA16 LINE L1 -16 6150 5422 280 200 0 0 chrX 20807713 20807758 -141792172 - MER69 DNA AcHobo -129 48 4 253 160 120 0 chrX 20807792 20807842 -141792088 - MIR SINE MIR -172 90 35 618 326 89 51 chrX 20808466 20808960 -141790970 - L2 LINE L2 -473 2841 2329 1607 224 17 14 chrX 20809040 20809402 -141790528 + MLT1A1 LTR MaLR 3 365 0 2308 84 0 7 chrX 20809610 20809906 -141790024 - AluSc SINE Alu -15 294 1 1043 212 18 14 chrX 20810798 20811020 -141788910 - MER58A DNA MER1_type -1 223 1 23 0 0 0 chrX 20811337 20811360 -141788570 + AT_rich Low_complexity Low_complexity 1 23 0 10547 184 6 44 chrX 20811407 20812921 -141787009 - L1PA15 LINE L1 -21 6144 4574 388 70 35 0 chrX 20812921 20812978 -141786952 - AluSc SINE Alu 0 299 241 10547 184 6 44 chrX 20812978 20814862 -141785068 - L1PA15 LINE L1 -1591 4574 2827 1983 110 7 4 chrX 20815820 20816101 -141783829 + AluSp SINE Alu 1 282 -31 315 0 0 0 chrX 20816102 20816137 -141783793 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 235 109 55 73 chrX 20816281 20816336 -141783594 + MADE1 DNA Mariner 1 54 -26 243 88 0 0 chrX 20818253 20818287 -141781643 + (GA)n Simple_repeat Simple_repeat 2 35 0 520 213 25 0 chrX 20818847 20818969 -141780961 - L1MA9 LINE L1 -22 6290 6166 222 118 0 0 chrX 20818970 20819004 -141780926 + (TG)n Simple_repeat Simple_repeat 1 34 0 32 26 0 0 chrX 20819057 20819096 -141780834 + AT_rich Low_complexity Low_complexity 1 39 0 1533 271 25 28 chrX 20819151 20819660 -141780270 - L1MC4 LINE L1 -106 7936 7429 210 341 117 28 chrX 20820182 20820431 -141779499 + L2 LINE L2 2456 2726 -588 265 266 203 16 chrX 20820736 20820864 -141779066 + L2 LINE L2 3142 3293 -20 321 293 96 23 chrX 20821390 20821727 -141778203 - MLT1J LTR MaLR -1 428 66 205 155 35 0 chrX 20821854 20821912 -141778018 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 208 306 56 28 chrX 20822676 20822784 -141777146 - MIR SINE MIR -146 116 6 204 40 0 0 chrX 20823103 20823128 -141776802 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 824 0 10 0 chrX 20823128 20823224 -141776706 + (GGAAA)n Simple_repeat Simple_repeat 5 101 0 2160 179 28 7 chrX 20824466 20824903 -141775027 - L1MA8 LINE L1 -2 6289 5844 253 230 50 93 chrX 20825206 20825254 -141774676 - MARNA DNA Mariner -308 278 229 2031 101 14 0 chrX 20825254 20825649 -141774281 + AluSx SINE Alu 3 401 0 253 230 50 93 chrX 20825649 20825738 -141774192 - MARNA DNA Mariner -357 229 146 1302 153 37 4 chrX 20826044 20826286 -141773644 + L1MA9 LINE L1 5819 6068 -244 293 311 53 80 chrX 20826767 20826992 -141772938 + LTR16A LTR ERVL 225 443 -7 1810 143 93 24 chrX 20827217 20827601 -141772329 - L1MA8 LINE L1 -141 6150 5738 453 178 76 17 chrX 20827584 20827702 -141772228 + L1MA8 LINE L1 6162 6286 -5 * 1969 258 114 13 chrX 20828311 20828908 -141771022 - MLT2F LTR ERVL 0 663 7 331 250 177 0 chrX 20828908 20829004 -141770926 - MIR SINE MIR -53 209 97 1239 254 77 85 chrX 20829024 20829087 -141770843 + L1ME LINE L1 40 102 -5968 2108 134 0 3 chrX 20829087 20829392 -141770538 - AluSx SINE Alu -8 304 1 1239 254 77 85 chrX 20829392 20829407 -141770523 + L1ME LINE L1 102 116 -5954 3562 182 15 27 chrX 20829407 20830148 -141769782 + L1MA10 LINE L1 5600 6331 -3 201 39 0 0 chrX 20830156 20830182 -141769748 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1239 254 77 85 chrX 20830182 20830901 -141769029 + L1ME LINE L1 123 840 -5230 976 294 143 18 chrX 20830921 20831363 -141768567 - L2 LINE L2 -399 2915 2419 370 249 64 98 chrX 20831367 20831452 -141768478 - MER45A DNA AcHobo -1407 174 95 2190 96 0 4 chrX 20831452 20831770 -141768160 + AluSg SINE Alu 2 318 0 370 249 64 98 chrX 20831770 20831856 -141768074 - MER45A DNA AcHobo -1486 95 8 28 29 0 0 chrX 20831956 20831991 -141767939 + AT_rich Low_complexity Low_complexity 1 35 0 1583 163 80 49 chrX 20832375 20832701 -141767229 - MER44D DNA MER2_type -1 608 3 26 0 0 0 chrX 20833044 20833070 -141766860 + AT_rich Low_complexity Low_complexity 1 26 0 307 295 125 14 chrX 20833352 20833633 -141766297 - L1MEd LINE L1 -3142 2987 2676 687 75 0 0 chrX 20833735 20833829 -141766101 + L1MA1 LINE L1 6205 6298 -4 245 61 0 61 chrX 20834140 20834158 -141765772 + (TA)n Simple_repeat Simple_repeat 1 19 -27 530 45 0 0 chrX 20834158 20834225 -141765705 - L1MA1 LINE L1 -15 6287 6221 245 61 0 61 chrX 20834225 20834255 -141765675 + (TA)n Simple_repeat Simple_repeat 19 46 0 210 91 0 0 chrX 20834254 20834287 -141765643 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 2032 117 14 0 chrX 20834513 20834804 -141765126 - AluSx SINE Alu -14 298 4 296 316 156 45 chrX 20835164 20835522 -141764408 - L1MEd LINE L1 -5509 610 213 21 0 0 0 chrX 20835776 20835797 -141764133 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrX 20836621 20836643 -141763287 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 1118 190 80 23 chrX 20836679 20836942 -141762988 + AluJb SINE Alu 17 294 -18 315 345 106 45 chrX 20837209 20837606 -141762324 - L3 LINE CR1 -227 1350 930 649 345 208 2 chrX 20837912 20838350 -141761580 - L3 LINE CR1 -738 839 312 2046 203 62 78 chrX 20838955 20839581 -141760349 + MLT1E3 LTR MaLR 1 616 -8 1110 160 19 19 chrX 20839589 20839795 -141760135 + AluJo SINE Alu 87 292 -20 1192 226 95 67 chrX 20839831 20840282 -141759648 - L1ME3A LINE L1 -48 6122 5659 288 283 71 9 chrX 20841004 20841117 -141758813 + MIR SINE MIR 69 188 -74 481 139 0 206 chrX 20841134 20841299 -141758631 - MER3 DNA MER1_type -1 208 78 3417 75 0 0 chrX 20841377 20841831 -141758099 + L1PA8 LINE L1 5717 6170 -2 2710 117 147 34 chrX 20842379 20842850 -141757080 - MER1A DNA MER1_type 0 527 4 393 172 0 11 chrX 20843956 20844049 -141755881 + L1MA9 LINE L1 6213 6304 -8 477 225 69 92 chrX 20844521 20844694 -141755236 + MER5A DNA MER1_type 1 169 -20 3122 148 24 4 chrX 20844943 20845491 -141754439 + L1MB3 LINE L1 5591 6149 -34 1381 148 62 0 chrX 20845483 20845692 -141754238 + L1PB4 LINE L1 5569 5764 -392 * 234 0 0 0 chrX 20845692 20845718 -141754212 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chrX 20845717 20845750 -141754180 + (CA)n Simple_repeat Simple_repeat 2 34 0 1381 148 62 0 chrX 20845718 20845783 -141754147 + L1PB4 LINE L1 5764 5826 -330 915 97 0 24 chrX 20845783 20845907 -141754023 + AluSg/x SINE Alu 170 290 -20 1700 163 30 18 chrX 20845907 20846239 -141753691 + L1PB4 LINE L1 5814 6149 -7 32 26 0 0 chrX 20846268 20846307 -141753623 + AT_rich Low_complexity Low_complexity 1 39 0 2193 85 3 3 chrX 20846441 20846756 -141753174 + AluSq SINE Alu 1 315 0 705 280 71 38 chrX 20846803 20847042 -141752888 - MIR SINE MIR -15 247 1 354 339 124 29 chrX 20847556 20847717 -141752213 + MLT1H LTR MaLR 1 145 -404 2112 106 3 3 chrX 20847717 20848019 -141751911 - AluSg SINE Alu -8 302 1 354 339 124 29 chrX 20848019 20848164 -141751766 + MLT1H LTR MaLR 145 336 -213 1827 122 34 30 chrX 20848392 20848687 -141751243 - AluSx SINE Alu -16 296 1 5335 157 20 51 chrX 20848975 20849658 -141750272 + L1MA6 LINE L1 4931 5634 -666 1834 146 10 36 chrX 20849658 20849967 -141749963 + AluJo SINE Alu 3 303 -9 5335 157 20 51 chrX 20849967 20850149 -141749781 + L1MA6 LINE L1 5634 5820 -480 556 250 0 29 chrX 20850149 20850285 -141749645 + FLAM_C SINE Alu 2 133 0 5335 157 20 51 chrX 20850285 20850787 -141749143 + L1MA6 LINE L1 5820 6272 -28 2365 68 7 0 chrX 20850787 20851081 -141748849 - AluSp SINE Alu -17 296 1 5335 157 20 51 chrX 20851081 20851109 -141748821 + L1MA6 LINE L1 6272 6299 -1 221 250 29 0 chrX 20851848 20851916 -141748014 + (CA)n Simple_repeat Simple_repeat 1 70 0 606 334 98 6 chrX 20852711 20853028 -141746902 + MLT1J2 LTR MaLR 63 408 -42 237 176 59 59 chrX 20853123 20853191 -141746739 + MIR SINE MIR 154 221 -41 221 329 40 13 chrX 20853332 20853408 -141746522 - MIR3 SINE MIR -119 89 12 778 241 67 0 chrX 20853861 20854056 -141745874 + MER3 DNA MER1_type 1 208 -1 192 418 62 21 chrX 20854370 20854564 -141745366 + L2 LINE L2 1344 1545 -1769 2341 80 0 16 chrX 20854612 20854624 -141745306 - AluSc SINE Alu 0 309 298 210 37 0 0 chrX 20854624 20854651 -141745279 + (TG)n Simple_repeat Simple_repeat 2 28 0 2341 80 0 16 chrX 20854651 20854952 -141744978 - AluSc SINE Alu -11 298 1 189 74 0 0 chrX 20855074 20855101 -141744829 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chrX 20856509 20856532 -141743398 + AT_rich Low_complexity Low_complexity 1 23 0 218 160 40 13 chrX 20856847 20856922 -141743008 + (TA)n Simple_repeat Simple_repeat 2 78 0 278 208 28 0 chrX 20856944 20857088 -141742842 + (TA)n Simple_repeat Simple_repeat 1 148 0 234 190 52 0 chrX 20857093 20857151 -141742779 - L1MCa LINE L1 -4371 2055 1995 267 280 0 21 chrX 20857179 20857272 -141742658 - L1MC4 LINE L1 -1337 6705 6615 244 290 0 21 chrX 20857272 20857365 -141742565 + L1MC4 LINE L1 6613 6703 -1339 440 213 0 48 chrX 20857391 20857579 -141742351 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 258 276 46 0 chrX 20857584 20857671 -141742259 + L1MC4 LINE L1 6613 6703 -1339 232 333 0 0 chrX 20857659 20857746 -141742184 - L1MC4 LINE L1 -1339 6703 6617 * 230 320 39 0 chrX 20857883 20857961 -141741969 - MER91B DNA MER1_type -23 167 87 265 271 0 110 chrX 20857975 20858093 -141741837 - MER91B DNA MER1_type -60 130 26 1143 94 0 99 chrX 20858459 20858650 -141741280 + AluSc SINE Alu 138 309 0 225 65 0 0 chrX 20858664 20858695 -141741235 + (TC)n Simple_repeat Simple_repeat 2 32 0 2104 114 0 0 chrX 20859802 20860114 -141739816 - AluSx SINE Alu 0 313 2 1322 189 4 47 chrX 20860223 20860498 -141739432 + AluJo SINE Alu 3 265 -47 898 86 19 25 chrX 20860506 20860668 -141739262 + (TTTC)n Simple_repeat Simple_repeat 1 161 0 333 67 0 0 chrX 20860668 20860713 -141739217 - Alu SINE Alu -257 45 1 210 150 0 0 chrX 20860727 20860767 -141739163 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5457 189 10 4 chrX 20861035 20861362 -141738568 - L1 LINE L1 -1404 4742 4419 216 0 0 0 chrX 20861362 20861386 -141738544 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5457 189 10 4 chrX 20861386 20862167 -141737763 - L1 LINE L1 -1727 4419 3627 * 6063 140 7 6 chrX 20862155 20863189 -141736741 + L1PB1 LINE L1 4748 5788 -363 525 32 0 0 chrX 20863189 20863252 -141736678 + (TA)n Simple_repeat Simple_repeat 1 63 0 6063 140 7 6 chrX 20863252 20863612 -141736318 + L1PB1 LINE L1 5788 6146 -5 30 27 0 0 chrX 20863612 20863649 -141736281 + AT_rich Low_complexity Low_complexity 1 37 0 262 284 0 0 chrX 20863972 20864039 -141735891 - MIR SINE MIR -86 176 110 272 343 37 37 chrX 20864082 20864216 -141735714 + MIR SINE MIR 14 147 -115 642 292 55 61 chrX 20865171 20865507 -141734423 - L2 LINE L2 -5 3308 2972 2241 94 7 0 chrX 20865507 20865804 -141734126 + AluSg SINE Alu 1 299 -11 642 292 55 61 chrX 20865804 20865915 -141734015 - L2 LINE L2 -341 2972 2862 2206 92 37 0 chrX 20865915 20866210 -141733720 + AluY SINE Alu 1 306 -5 642 292 55 61 chrX 20866210 20866346 -141733584 - L2 LINE L2 -451 2862 2670 6325 76 14 1 chrX 20866346 20867162 -141732768 - LTR12 LTR ERV1 0 826 1 642 292 55 61 chrX 20867162 20867195 -141732735 - L2 LINE L2 -643 2670 2638 1368 200 53 19 chrX 20867196 20867683 -141732247 + L1MB7 LINE L1 4965 5470 -700 1931 136 7 3 chrX 20867750 20868221 -141731709 + AluSx SINE Alu 1 472 0 1601 223 159 24 chrX 20868221 20868845 -141731085 + L1MB7 LINE L1 5476 6183 -1 965 249 123 30 chrX 20868846 20869243 -141730687 - L2 LINE L2 -664 2650 2217 4836 126 41 0 chrX 20869266 20870050 -141729880 - L1MA4A LINE L1 -12 6291 5476 1263 101 0 0 chrX 20870052 20870221 -141729709 - AluSc SINE Alu -10 299 131 2419 68 0 0 chrX 20870222 20870518 -141729412 - AluY SINE Alu -15 296 1 1610 125 22 8 chrX 20870518 20870901 -141729029 - L1MA4A LINE L1 -743 5403 5100 4750 107 20 4 chrX 20870910 20871650 -141728280 + L1MA4A LINE L1 5548 6299 -4 254 224 90 0 chrX 20873437 20873504 -141726426 + MIR SINE MIR 81 153 -109 299 331 105 22 chrX 20873652 20873811 -141726119 - MIR SINE MIR -58 150 21 8498 102 46 9 chrX 20873827 20875068 -141724862 - HSMAR1 DNA Mariner 0 1287 1 364 257 28 9 chrX 20875259 20875368 -141724562 + CT-rich Low_complexity Low_complexity 4 114 0 30 59 0 0 chrX 20875999 20876050 -141723880 + AT_rich Low_complexity Low_complexity 1 51 0 370 311 65 53 chrX 20876054 20876395 -141723535 - L1M4 LINE L1 -3654 2492 2148 27 49 0 0 chrX 20876398 20876439 -141723491 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 20876519 20876540 -141723390 + AT_rich Low_complexity Low_complexity 1 21 0 1916 143 0 0 chrX 20876705 20877028 -141722902 - AluSx SINE Alu 0 328 6 265 180 0 0 chrX 20877173 20877223 -141722707 - L1PA16 LINE L1 -4 6162 6113 560 205 6 0 chrX 20877226 20877382 -141722548 + (TA)n Simple_repeat Simple_repeat 1 157 0 315 284 45 0 chrX 20877394 20877482 -141722448 + L1MC4 LINE L1 6614 6705 -1337 375 270 0 0 chrX 20877501 20877653 -141722277 + (TA)n Simple_repeat Simple_repeat 2 153 0 356 222 9 0 chrX 20877797 20877905 -141722025 + (TA)n Simple_repeat Simple_repeat 1 109 0 4726 162 40 15 chrX 20877907 20879047 -141720883 - L1PA16 LINE L1 -37 6129 4976 21 36 0 0 chrX 20879567 20879595 -141720335 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chrX 20880535 20880558 -141719372 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 944 214 16 0 chrX 20880913 20881100 -141718830 + MER58A DNA MER1_type 35 224 0 187 228 35 35 chrX 20882113 20882170 -141717760 - MER5B DNA MER1_type 0 178 122 634 128 55 0 chrX 20882175 20882284 -141717646 + L1PB3 LINE L1 6040 6154 0 183 379 0 15 chrX 20882446 20882512 -141717418 - L2 LINE L2 -171 3101 3037 442 258 31 47 chrX 20882617 20882745 -141717185 + MER5B DNA MER1_type 53 178 0 262 224 56 7 chrX 20883494 20883684 -141716246 + (TA)n Simple_repeat Simple_repeat 1 199 0 384 132 63 13 chrX 20883695 20883854 -141716076 + (TA)n Simple_repeat Simple_repeat 2 168 0 23 33 0 0 chrX 20883929 20883959 -141715971 + AT_rich Low_complexity Low_complexity 1 30 0 818 250 146 61 chrX 20883959 20884139 -141715791 + L1MC4 LINE L1 7527 7690 -352 2238 96 7 0 chrX 20884139 20884431 -141715499 - AluSq SINE Alu -15 298 5 818 250 146 61 chrX 20884431 20884722 -141715208 + L1MC4 LINE L1 7690 8038 -4 226 272 101 69 chrX 20884772 20884989 -141714941 - L2 LINE L2 -75 3238 3015 2954 65 0 0 chrX 20885598 20885982 -141713948 - L1PA6 LINE L1 -1 6153 5770 2526 71 0 0 chrX 20885982 20886300 -141713630 - L1PA6 LINE L1 0 6154 5832 22 0 0 0 chrX 20886681 20886703 -141713227 + AT_rich Low_complexity Low_complexity 1 22 0 800 245 36 51 chrX 20886966 20887219 -141712711 - MLT1A2 LTR MaLR 0 374 126 4967 30 78 0 chrX 20887221 20887860 -141712070 - L1PA3 LINE L1 -743 5403 4715 6221 26 0 0 chrX 20887860 20888624 -141711306 + L1PA3 LINE L1 5419 6186 0 874 167 35 0 chrX 20888624 20888768 -141711162 - MLT1A2 LTR MaLR -224 150 2 597 296 142 49 chrX 20888885 20889357 -141710573 + L2 LINE L2 2799 3313 0 32 26 0 0 chrX 20890130 20890169 -141709761 + AT_rich Low_complexity Low_complexity 1 39 0 2314 80 0 0 chrX 20890577 20890863 -141709067 - AluSc SINE Alu -23 286 1 198 0 0 0 chrX 20890870 20890892 -141709038 + (T)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chrX 20891693 20891716 -141708214 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chrX 20891756 20891781 -141708149 + AT_rich Low_complexity Low_complexity 1 25 0 2063 127 0 3 chrX 20891784 20892075 -141707855 - AluSx SINE Alu -22 290 1 1445 124 4 0 chrX 20892670 20892904 -141707026 + L1MA4 LINE L1 6065 6299 -1 760 284 77 11 chrX 20894501 20894762 -141705168 + L2 LINE L2 1782 2059 -1255 33 80 0 0 chrX 20894933 20895008 -141704922 + AT_rich Low_complexity Low_complexity 1 75 0 214 278 19 0 chrX 20895371 20895425 -141704505 - L2 LINE L2 -1 3271 3217 745 152 0 24 chrX 20895649 20895774 -141704156 - AluJb SINE Alu -6 306 185 1148 357 118 11 chrX 20896056 20896720 -141703210 + L2 LINE L2 75 809 -2505 296 289 94 16 chrX 20896751 20896879 -141703051 - MLT1G1 LTR MaLR 0 595 458 21 82 0 0 chrX 20897923 20897972 -141701958 + AT_rich Low_complexity Low_complexity 1 49 0 723 346 60 40 chrX 20898105 20898518 -141701412 - L2 LINE L2 -2 3311 2884 2346 156 46 5 chrX 20898518 20898935 -141700995 - MER61C LTR ERV1 0 434 1 723 346 60 40 chrX 20898935 20899122 -141700808 - L2 LINE L2 -429 2884 2702 280 128 21 0 chrX 20899505 20899552 -141700378 + Alu SINE Alu 1 48 -254 1148 133 0 0 chrX 20899553 20899733 -141700197 + AluSg/x SINE Alu 127 306 -4 930 266 105 91 chrX 20899734 20899937 -141699993 + HAL1 LINE L1 999 1198 -1309 1951 119 25 14 chrX 20899937 20900223 -141699707 + AluSc SINE Alu 1 289 -20 930 266 105 91 chrX 20900223 20901132 -141698798 + HAL1 LINE L1 1198 2127 -380 387 253 75 65 chrX 20901891 20902077 -141697853 + HAL1 LINE L1 1701 1888 -619 273 98 0 0 chrX 20902302 20902343 -141697587 + (TA)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chrX 20902344 20902372 -141697558 + (TG)n Simple_repeat Simple_repeat 1 28 0 941 262 111 43 chrX 20902383 20902753 -141697177 + MSTD LTR MaLR 2 396 0 2146 106 0 3 chrX 20902946 20903238 -141696692 - AluSg1 SINE Alu -18 291 1 2910 160 50 0 chrX 20903405 20903968 -141695962 - L1MC3 LINE L1 -1 7784 7194 4641 236 67 52 chrX 20903970 20904140 -141695790 - L1MCb LINE L1 -2342 4222 4056 3663 135 24 64 chrX 20904140 20904860 -141695070 + LTR8 LTR ERV1 1 691 0 4641 236 67 52 chrX 20904860 20905138 -141694792 - L1MCb LINE L1 -2508 4056 3784 1936 109 40 0 chrX 20905138 20905436 -141694494 - AluSc SINE Alu 0 309 1 4641 236 67 52 chrX 20905436 20909142 -141690788 - L1MCb LINE L1 -2780 3784 8 2271 69 21 3 chrX 20909921 20910211 -141689719 - AluY SINE Alu -16 295 1 318 364 17 51 chrX 20911574 20911750 -141688180 + L1ME LINE L1 272 441 -5629 726 137 7 43 chrX 20911986 20912125 -141687805 + AluJo SINE Alu 1 134 -178 241 329 122 53 chrX 20912683 20912929 -141687001 + L2 LINE L2 2537 2799 -515 251 122 0 20 chrX 20913008 20913057 -141686873 + L1ME LINE L1 557 604 -4958 2987 161 14 55 chrX 20913243 20913809 -141686121 + MLT2B3 LTR ERVL 1 543 -11 1998 209 152 73 chrX 20914480 20915425 -141684505 + LTR28 LTR ERV1 1 1020 0 207 214 0 0 chrX 20915710 20915752 -141684178 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 497 332 149 26 chrX 20915754 20916283 -141683647 - L2 LINE L2 0 3313 2707 1504 247 170 30 chrX 20916299 20916922 -141683008 - L1ME3A LINE L1 -17 6153 5444 25 31 0 0 chrX 20916929 20916961 -141682969 + AT_rich Low_complexity Low_complexity 1 32 0 1652 254 60 48 chrX 20916972 20917590 -141682340 - L1ME1 LINE L1 -102 6064 5440 * 1835 244 87 31 chrX 20917587 20917701 -141682229 - L1ME1 LINE L1 -957 5189 5083 2292 87 0 7 chrX 20917701 20918000 -141681930 + AluSg SINE Alu 1 297 -13 1835 244 87 31 chrX 20918000 20918336 -141681594 - L1ME1 LINE L1 -1063 5083 4767 2216 111 0 9 chrX 20918336 20918651 -141681279 + AluSx SINE Alu 1 312 0 1835 244 87 31 chrX 20918651 20918691 -141681239 - L1ME1 LINE L1 -1379 4767 4731 333 143 10 92 chrX 20918691 20918789 -141681141 - L1PA11 LINE L1 0 6174 6085 1835 244 87 31 chrX 20918789 20919067 -141680863 - L1ME1 LINE L1 -1415 4731 4376 1934 150 20 3 chrX 20919067 20919367 -141680563 + AluSx SINE Alu 1 305 -7 582 238 11 21 chrX 20919424 20919613 -141680317 - L1ME1 LINE L1 -2097 4049 3863 * 1077 225 43 130 chrX 20919602 20920411 -141679519 - L1ME1 LINE L1 -2771 3375 2637 2110 126 0 10 chrX 20920416 20920725 -141679205 - AluSq SINE Alu -7 306 1 697 317 21 21 chrX 20920760 20921193 -141678737 - L1 LINE L1 -2220 3926 3478 443 270 44 28 chrX 20921193 20921428 -141678502 + L1ME LINE L1 5267 5508 -656 2310 96 0 7 chrX 20921428 20921730 -141678200 + AluY SINE Alu 1 300 -11 443 270 44 28 chrX 20921730 20921746 -141678184 + L1ME LINE L1 5508 5522 -642 499 255 10 21 chrX 20921759 20921951 -141677979 + L1ME3A LINE L1 5343 5532 -630 1911 221 64 51 chrX 20921968 20922560 -141677370 - LTR9 LTR ERV1 0 612 13 358 278 160 36 chrX 20922565 20922871 -141677059 + L1ME3A LINE L1 5565 5908 -262 22 0 0 0 chrX 20923212 20923234 -141676696 + AT_rich Low_complexity Low_complexity 1 22 0 306 138 0 0 chrX 20923610 20923668 -141676262 + (CA)n Simple_repeat Simple_repeat 2 59 0 2076 123 0 25 chrX 20923956 20924273 -141675657 - AluY SINE Alu -2 309 1 192 318 0 0 chrX 20924405 20924449 -141675481 + L2 LINE L2 1834 1877 -1437 202 377 55 20 chrX 20924510 20924656 -141675274 + L2 LINE L2 2384 2534 -780 786 209 114 20 chrX 20924657 20924858 -141675072 - MLT1B LTR MaLR 0 379 155 3381 162 15 2 chrX 20924857 20925451 -141674479 - L1PB4 LINE L1 0 6156 5555 1627 150 17 19 chrX 20925453 20925882 -141674048 + L1PB4 LINE L1 5102 5536 -620 747 215 25 6 chrX 20925887 20926045 -141673885 - MLT1B LTR MaLR -213 161 1 21 36 0 0 chrX 20926349 20926377 -141673553 + AT_rich Low_complexity Low_complexity 1 28 0 909 204 18 0 chrX 20926395 20926562 -141673368 - FAM SINE Alu -4 45 1 1853 141 7 0 chrX 20926669 20926973 -141672957 - L1MB1 LINE L1 0 6168 5863 2965 151 20 2 chrX 20926973 20927478 -141672452 + L1MB1 LINE L1 5345 5858 -310 223 366 56 49 chrX 20927491 20927582 -141672348 + L2 LINE L2 2694 2783 -530 2035 80 6 96 chrX 20927582 20927906 -141672024 - AluSq SINE Alu -18 295 1 223 366 56 49 chrX 20927906 20928179 -141671751 + L2 LINE L2 2783 3057 -256 340 336 119 0 chrX 20928341 20928475 -141671455 + L2 LINE L2 3162 3311 -2 250 395 25 15 chrX 20928493 20928693 -141671237 + L2 LINE L2 2376 2577 -737 648 180 12 72 chrX 20929215 20929342 -141670588 - L1MA10 LINE L1 0 6334 6217 2097 113 0 0 chrX 20929342 20929650 -141670280 + AluSx SINE Alu 1 308 0 648 180 12 72 chrX 20929650 20929688 -141670242 - L1MA10 LINE L1 -117 6217 6178 422 266 43 29 chrX 20930295 20930434 -141669496 - MLT1J2 LTR MaLR -58 392 252 272 300 77 31 chrX 20930514 20930644 -141669286 - MLT1J2 LTR MaLR -314 136 1 2189 196 52 17 chrX 20930945 20931180 -141668750 + LOR1a LTR ERV1 1 226 -271 2190 75 37 7 chrX 20931180 20931474 -141668456 - AluY SINE Alu -8 303 1 2189 196 52 17 chrX 20931474 20931718 -141668212 + LOR1a LTR ERV1 226 497 0 1694 174 22 0 chrX 20931922 20932197 -141667733 + AluJo SINE Alu 1 281 -31 512 123 0 0 chrX 20932332 20932405 -141667525 - MER57B LTR ERV1 -360 74 2 2027 175 29 42 chrX 20932405 20932864 -141667066 - L1M2 LINE L1 -619 5672 5210 2074 124 0 3 chrX 20932864 20933184 -141666746 + AluSx SINE Alu 1 319 0 2027 175 29 42 chrX 20933184 20933445 -141666485 - L1M2 LINE L1 -1081 5210 4947 390 100 86 0 chrX 20933529 20933599 -141666331 - L1PA13 LINE L1 -4 6159 6084 10051 138 26 11 chrX 20933699 20935296 -141664634 - L1P3 LINE L1 -4836 1625 5 451 173 0 0 chrX 20935334 20935415 -141664515 - FLAM_A SINE Alu -32 110 30 3381 147 11 0 chrX 20935515 20936044 -141663886 - L1PA15 LINE L1 -296 5869 5335 * 8630 66 1 1 chrX 20936037 20937181 -141662749 - L1P LINE L1 -3091 3055 1912 21 36 0 0 chrX 20937938 20937966 -141661964 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 20938320 20938356 -141661574 + AT_rich Low_complexity Low_complexity 1 36 0 233 237 0 17 chrX 20938463 20938522 -141661408 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 2044 99 0 11 chrX 20938556 20938864 -141661066 + AluY SINE Alu 1 305 0 1907 156 3 7 chrX 20939111 20939418 -141660512 - AluSq SINE Alu -7 306 1 24 53 0 0 chrX 20940139 20940177 -141659753 + AT_rich Low_complexity Low_complexity 1 38 0 1649 203 116 91 chrX 20941273 20942010 -141657920 + LTR1B LTR ERV1 1 745 -81 374 375 7 0 chrX 20942109 20942320 -141657610 - HERVL LTR ERVL -511 5143 4985 231 235 0 0 chrX 20942340 20942391 -141657539 + T-rich Low_complexity Low_complexity 1 51 0 546 358 50 10 chrX 20942741 20943043 -141656887 - HERVL LTR ERVL -1904 3860 3547 403 154 0 22 chrX 20943215 20943306 -141656624 + (TA)n Simple_repeat Simple_repeat 1 89 0 1666 224 81 146 chrX 20943976 20944961 -141654969 + LTR28 LTR ERV1 1 1020 0 619 323 67 50 chrX 20944984 20945548 -141654382 - HERVL LTR ERVL -3297 2467 1894 460 319 103 28 chrX 20945592 20945874 -141654056 - LTR16A1 LTR ERVL -8 449 147 2528 166 18 11 chrX 20946056 20946514 -141653416 + LOR1b LTR ERV1 1 461 0 1054 45 0 0 chrX 20946621 20946754 -141653176 + L1PA8 LINE L1 6039 6171 -1 207 0 0 0 chrX 20946771 20946794 -141653136 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 392 345 15 15 chrX 20947582 20947785 -141652145 + MLT1L LTR MaLR 411 613 -2 29 0 0 0 chrX 20948361 20948390 -141651540 + AT_rich Low_complexity Low_complexity 1 29 0 41 0 0 0 chrX 20948523 20948564 -141651366 + AT_rich Low_complexity Low_complexity 1 41 0 1094 129 53 12 chrX 20948841 20949012 -141650918 + AluSg/x SINE Alu 119 296 -14 519 239 6 43 chrX 20950291 20950454 -141649476 - L1ME LINE L1 -410 5754 5598 2127 106 0 16 chrX 20950454 20950757 -141649173 - AluSc SINE Alu -11 298 1 299 205 62 45 chrX 20950967 20951079 -141648851 + L2 LINE L2 3197 3310 -3 2303 77 3 3 chrX 20951278 20951577 -141648353 - AluSc SINE Alu -10 299 1 22 35 0 0 chrX 20952492 20952521 -141647409 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chrX 20952685 20952741 -141647189 + AT_rich Low_complexity Low_complexity 1 56 0 1852 128 0 0 chrX 20953030 20953311 -141646619 - AluSq SINE Alu 0 316 36 347 236 28 0 chrX 20953614 20953686 -141646244 - MER2 DNA MER2_type -1 344 271 573 200 20 0 chrX 20953759 20953859 -141646071 - MER2 DNA MER2_type -241 104 3 194 147 59 0 chrX 20953895 20953963 -141645967 + (TA)n Simple_repeat Simple_repeat 1 72 0 2159 114 10 3 chrX 20954168 20954465 -141645465 - AluSq SINE Alu -14 299 1 190 277 79 30 chrX 20954984 20955085 -141644845 + MIR SINE MIR 96 201 -61 2225 94 3 3 chrX 20956424 20956721 -141643209 + AluSx SINE Alu 1 297 -15 4003 158 69 11 chrX 20957314 20958095 -141641835 - LTR1B LTR ERV1 0 826 1 2294 82 23 3 chrX 20958582 20958887 -141641043 - AluSx SINE Alu -1 311 1 216 163 0 0 chrX 20959343 20959386 -141640544 + (TA)n Simple_repeat Simple_repeat 1 43 0 309 118 0 0 chrX 20959407 20959458 -141640472 + (GA)n Simple_repeat Simple_repeat 1 51 0 198 0 0 0 chrX 20959574 20959596 -141640334 + (TA)n Simple_repeat Simple_repeat 2 23 0 2243 103 3 3 chrX 20961373 20961675 -141638255 + AluSp SINE Alu 1 302 -11 439 338 0 25 chrX 20961700 20961901 -141638029 - LTR67 LTR ERVL -2 555 360 812 156 0 0 chrX 20962223 20962345 -141637585 - FLAM_C SINE Alu -9 134 13 22 35 0 0 chrX 20963132 20963161 -141636769 + AT_rich Low_complexity Low_complexity 1 29 0 208 264 0 0 chrX 20963201 20963254 -141636676 + (TA)n Simple_repeat Simple_repeat 1 53 0 1762 180 0 16 chrX 20963382 20963688 -141636242 + AluJo SINE Alu 1 301 -11 1086 192 28 9 chrX 20964408 20964622 -141635308 - AluJo SINE Alu -90 222 5 1319 67 112 0 chrX 20965248 20965426 -141634504 - AluSg/x SINE Alu -22 290 93 255 200 0 0 chrX 20965629 20965669 -141634261 - L2 LINE L2 -35 3237 3198 463 307 37 17 chrX 20966773 20966821 -141633109 - MIR3 SINE MIR -5 257 211 2143 108 14 0 chrX 20966821 20967109 -141632821 - AluSg SINE Alu -18 292 1 463 307 37 17 chrX 20967109 20967308 -141632622 - MIR3 SINE MIR -51 211 5 1831 186 0 0 chrX 20967411 20967702 -141632228 + AluJb SINE Alu 1 291 -21 314 123 18 0 chrX 20967702 20967759 -141632171 + (CA)n Simple_repeat Simple_repeat 1 58 0 183 338 0 42 chrX 20967909 20967980 -141631950 + MIR3 SINE MIR 6 73 -135 1989 138 10 0 chrX 20968090 20968410 -141631520 - AluSx SINE Alu 0 312 1 21 0 0 0 chrX 20968410 20968431 -141631499 + AT_rich Low_complexity Low_complexity 1 21 0 2045 116 3 31 chrX 20969360 20969678 -141630252 - AluSx SINE Alu -3 309 1 1636 56 19 0 chrX 20969694 20969907 -141630023 - L1PA12 LINE L1 -1 6167 5951 268 331 51 46 chrX 20970314 20970489 -141629441 - MIR3 SINE MIR -3 205 30 636 279 48 85 chrX 20970663 20971040 -141628890 + L2 LINE L2 1584 1946 -1368 423 308 93 50 chrX 20971129 20971408 -141628522 - MLT1H LTR MaLR -257 292 2 2691 254 65 50 chrX 20971409 20971726 -141628204 + L2 LINE L2 1893 2204 -1110 408 130 78 0 chrX 20971726 20971803 -141628127 + L1MB2 LINE L1 6087 6169 -2 2691 254 65 50 chrX 20971803 20972445 -141627485 + L2 LINE L2 2204 2866 -448 2227 166 75 15 chrX 20972465 20972934 -141626996 + LOR1a LTR ERV1 1 497 0 262 314 133 0 chrX 20972988 20973093 -141626837 - MER91C DNA MER1_type 0 140 22 822 291 109 36 chrX 20973124 20973693 -141626237 - L2 LINE L2 -148 3165 2544 270 0 0 0 chrX 20973769 20973799 -141626131 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 312 39 26 chrX 20974093 20974324 -141625606 - L1M4 LINE L1 -2169 3977 3744 567 225 11 6 chrX 20974366 20974396 -141625534 + (TA)n Simple_repeat Simple_repeat 2 30 -150 1960 103 50 0 chrX 20974396 20974678 -141625252 - AluSg SINE Alu -14 296 1 567 225 11 6 chrX 20974678 20974825 -141625105 + (TA)n Simple_repeat Simple_repeat 30 180 0 27 62 0 0 chrX 20975108 20975156 -141624774 + AT_rich Low_complexity Low_complexity 1 48 0 1560 185 45 11 chrX 20975156 20975443 -141624487 - AluJo SINE Alu -15 297 1 28 0 0 0 chrX 20975564 20975592 -141624338 + AT_rich Low_complexity Low_complexity 1 28 0 378 159 34 0 chrX 20975886 20975974 -141623956 + (TA)n Simple_repeat Simple_repeat 2 92 0 187 100 25 25 chrX 20976052 20976092 -141623838 + (TA)n Simple_repeat Simple_repeat 1 40 0 * 240 86 0 0 chrX 20976091 20976126 -141623804 + (GA)n Simple_repeat Simple_repeat 2 36 0 605 242 33 22 chrX 20976593 20976775 -141623155 + MLT1J LTR MaLR 1 184 -327 26 50 0 0 chrX 20976924 20976964 -141622966 + AT_rich Low_complexity Low_complexity 1 40 0 305 238 12 12 chrX 20976964 20977044 -141622886 + MER116 DNA Mariner 1 80 0 22 56 0 19 chrX 20977201 20977221 -141622709 + AT_rich Low_complexity Low_complexity 1 20 -33 2213 96 3 0 chrX 20977221 20977503 -141622427 + AluSc SINE Alu 1 283 -26 22 56 0 19 chrX 20977503 20977536 -141622394 + AT_rich Low_complexity Low_complexity 20 53 0 228 135 0 27 chrX 20977559 20977596 -141622334 + HAL1b LINE L1 857 892 -456 2531 158 24 5 chrX 20977618 20978036 -141621894 + MSTB LTR MaLR 1 426 0 584 257 6 28 chrX 20978095 20978274 -141621656 - HsTC2 DNA Tc2 -283 1615 1441 22 56 0 0 chrX 20978282 20978318 -141621612 + AT_rich Low_complexity Low_complexity 1 36 0 7737 19 0 0 chrX 20978319 20979750 -141620180 - L1PA2 LINE L1 -2 6153 4724 5048 35 2 0 chrX 20979750 20980387 -141619543 + L1P LINE L1 2828 3465 -2681 22 0 0 0 chrX 20980387 20980409 -141619521 + AT_rich Low_complexity Low_complexity 1 22 0 1139 223 160 5 chrX 20981351 20981499 -141618431 + Charlie4a DNA MER1_type 26 150 -1811 2410 70 6 10 chrX 20981499 20981813 -141618117 - AluSp SINE Alu 0 313 1 1139 223 160 5 chrX 20981813 20982082 -141617848 + Charlie4a DNA MER1_type 150 508 0 599 150 0 9 chrX 20984146 20984259 -141615671 + GA-rich Low_complexity Low_complexity 4 115 0 808 138 40 6 chrX 20984289 20984463 -141615467 + GA-rich Low_complexity Low_complexity 1 180 0 4975 159 49 36 chrX 20984611 20985664 -141614266 + MER11C LTR ERVK 1 1067 -4 288 151 23 12 chrX 20986495 20986581 -141613349 + (TA)n Simple_repeat Simple_repeat 2 88 0 1771 124 3 95 chrX 20986835 20987185 -141612745 - AluSp SINE Alu 0 321 1 313 281 0 0 chrX 20987236 20987300 -141612630 - MIR SINE MIR -62 146 83 21 36 0 0 chrX 20987522 20987550 -141612380 + AT_rich Low_complexity Low_complexity 1 28 0 333 0 0 0 chrX 20987761 20987798 -141612132 + (CA)n Simple_repeat Simple_repeat 2 38 0 2163 82 36 0 chrX 20988400 20988679 -141611251 - AluSc SINE Alu -20 289 1 459 0 0 0 chrX 20988729 20988780 -141611150 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 271 329 82 41 chrX 20989528 20989591 -141610339 - MIR SINE MIR -44 218 159 3053 153 2 4 chrX 20989591 20990089 -141609841 + LOR1a LTR ERV1 1 497 0 271 329 82 41 chrX 20990089 20990195 -141609735 - MIR SINE MIR -103 159 42 255 320 109 26 chrX 20990227 20990383 -141609547 - MIR3 SINE MIR -21 187 19 24 0 0 0 chrX 20990451 20990475 -141609455 + AT_rich Low_complexity Low_complexity 1 24 0 249 211 0 0 chrX 20990600 20990652 -141609278 - L1MC4 LINE L1 -1339 6703 6652 26 64 0 0 chrX 20991570 20991617 -141608313 + AT_rich Low_complexity Low_complexity 1 47 0 322 151 0 0 chrX 20993009 20993062 -141606868 + AluJ/FLAM SINE Alu 37 89 -213 535 188 10 0 chrX 20993478 20993579 -141606351 + MER33 DNA MER1_type 8 109 -215 21 36 0 0 chrX 20993579 20993607 -141606323 + AT_rich Low_complexity Low_complexity 1 28 0 637 222 8 0 chrX 20993607 20993733 -141606197 - FLAM_C SINE Alu -16 127 1 390 153 74 163 chrX 20993751 20993890 -141606040 + MER33 DNA MER1_type 129 244 -2341 2290 92 3 0 chrX 20993890 20994183 -141605747 - AluY SINE Alu -17 294 1 390 153 74 163 chrX 20994183 20994258 -141605672 + MER33 DNA MER1_type 244 324 0 1189 156 22 53 chrX 20994266 20994491 -141605439 - MER20 DNA MER1_type 0 219 2 31 88 0 0 chrX 20994754 20994834 -141605096 + AT_rich Low_complexity Low_complexity 1 80 0 2068 141 111 35 chrX 20994875 20995231 -141604699 + MSTA LTR MaLR 1 392 -36 1806 170 3 13 chrX 20995231 20995531 -141604399 - AluJb SINE Alu -15 297 1 2068 141 111 35 chrX 20995531 20995572 -141604358 + MSTA LTR MaLR 392 428 0 297 0 0 0 chrX 20996791 20996824 -141603106 + (A)n Simple_repeat Simple_repeat 1 33 0 3809 125 52 83 chrX 20997054 20997864 -141602066 - LTR1 LTR ERV1 0 785 1 227 152 22 0 chrX 20998100 20998146 -141601784 + CT-rich Low_complexity Low_complexity 3 49 0 1944 145 12 12 chrX 20998679 20999023 -141600907 + LOR1a LTR ERV1 3 346 -151 2096 136 42 33 chrX 20999084 20999445 -141600485 - THE1B LTR MaLR 0 364 1 10664 104 38 11 chrX 20999445 21000967 -141598963 - THE1B-int LTR MaLR 0 1580 19 2305 97 39 31 chrX 21000972 21001332 -141598598 - THE1B LTR MaLR -1 363 1 794 161 0 8 chrX 21001335 21001465 -141598465 + LOR1b LTR ERV1 333 461 0 21 36 0 0 chrX 21002108 21002136 -141597794 + AT_rich Low_complexity Low_complexity 1 28 0 929 282 5 0 chrX 21002210 21002423 -141597507 - MER58A DNA MER1_type -10 214 1 340 204 0 82 chrX 21003344 21003442 -141596488 + L1MC4 LINE L1 6614 6703 -1339 238 264 18 0 chrX 21003554 21003664 -141596266 + Charlie7 DNA MER1_type 2421 2532 -80 32 0 0 0 chrX 21003664 21003696 -141596234 + AT_rich Low_complexity Low_complexity 1 32 0 1229 191 110 80 chrX 21003794 21004237 -141595693 + MER66A LTR ERV1 97 455 -23 277 346 49 27 chrX 21006349 21006612 -141593318 - L1MC/D LINE L1 -2007 5801 5533 830 224 0 0 chrX 21007720 21007876 -141592054 - FRAM SINE Alu -23 153 1 24 77 0 0 chrX 21008043 21008095 -141591835 + AT_rich Low_complexity Low_complexity 1 52 0 251 345 44 9 chrX 21008443 21008556 -141591374 - L2 LINE L2 0 3313 3197 302 214 0 0 chrX 21009041 21009054 -141590876 + MER3 DNA MER1_type 35 47 -162 886 192 40 30 chrX 21009054 21009252 -141590678 - MER3 DNA MER1_type 0 209 10 1837 128 0 35 chrX 21009284 21009593 -141590337 - AluSg SINE Alu 0 299 1 1676 151 0 83 chrX 21009593 21009918 -141590012 - AluJo SINE Alu -14 298 1 419 306 55 67 chrX 21011939 21012056 -141587874 - MIR SINE MIR 0 262 145 2272 71 0 3 chrX 21012056 21012352 -141587578 + AluY SINE Alu 1 295 -16 419 306 55 67 chrX 21012352 21012489 -141587441 - MIR SINE MIR -117 145 11 1011 266 97 50 chrX 21012904 21013325 -141586605 + L2 LINE L2 2873 3313 0 1496 230 82 107 chrX 21013551 21014510 -141585420 + LTR1B LTR ERV1 1 1018 -2 1731 336 51 24 chrX 21014570 21015029 -141584901 + ERVL LTR ERVL 1791 2236 -3528 1618 200 7 3 chrX 21015029 21015314 -141584616 + AluJo SINE Alu 1 286 -26 1731 336 51 24 chrX 21015314 21015846 -141584084 + ERVL LTR ERVL 2236 2809 -2955 10524 39 0 1 chrX 21015966 21017311 -141582619 + L1P LINE L1 3705 5047 -1099 1894 151 3 53 chrX 21017410 21017767 -141582163 + L1PB4 LINE L1 5811 6149 -7 2369 78 3 0 chrX 21017782 21018075 -141581855 - AluSp SINE Alu -19 294 1 306 412 110 94 chrX 21018615 21018989 -141580941 - L2 LINE L2 0 3313 2934 1253 164 19 0 chrX 21019063 21019277 -141580653 - MER20 DNA MER1_type -1 218 1 438 324 69 33 chrX 21020077 21020352 -141579578 - L1ME LINE L1 -627 5539 5255 1721 192 38 43 chrX 21021552 21021943 -141577987 - MLT1B LTR MaLR 0 390 2 390 209 47 0 chrX 21022002 21022131 -141577799 - L1ME LINE L1 -913 5233 5099 508 205 0 54 chrX 21022160 21022272 -141577658 - Tigger3(Golem) DNA MER2_type 0 3038 2933 303 49 0 0 chrX 21022272 21022313 -141577617 + (TA)n Simple_repeat Simple_repeat 2 42 0 305 286 0 0 chrX 21022425 21022502 -141577428 - Tigger3(Golem) DNA MER2_type -2951 78 2 238 255 0 0 chrX 21023122 21023173 -141576757 + MER77 LTR ERV1 359 409 -196 21 57 0 0 chrX 21023847 21023882 -141576048 + AT_rich Low_complexity Low_complexity 1 35 0 32 26 0 0 chrX 21024311 21024350 -141575580 + AT_rich Low_complexity Low_complexity 1 39 0 3129 130 12 2 chrX 21024468 21024977 -141574953 + L1PB4 LINE L1 5641 6154 -2 840 233 0 31 chrX 21025042 21025235 -141574695 + MER5A DNA MER1_type 1 187 -2 6048 123 90 77 chrX 21026165 21028322 -141571608 + pTR5 LTR ERV1 724 2433 -5 256 329 148 24 chrX 21028323 21028533 -141571397 + MIR SINE MIR 22 257 -5 278 274 21 11 chrX 21028592 21028687 -141571243 + MER5A DNA MER1_type 1 96 -93 404 255 92 26 chrX 21028830 21028983 -141570947 + MER5A DNA MER1_type 3 165 -24 228 381 28 17 chrX 21029015 21029191 -141570739 - MER5B DNA MER1_type 0 178 1 2373 64 7 14 chrX 21029645 21029941 -141569989 - AluY SINE Alu -17 294 1 1467 269 72 44 chrX 21030285 21030858 -141569072 + MER77 LTR ERV1 1 589 -16 281 347 75 25 chrX 21031785 21031984 -141567946 + MIR SINE MIR 21 229 -33 290 278 102 19 chrX 21032071 21032179 -141567751 + MER5A DNA MER1_type 1 117 -72 22 0 0 0 chrX 21032203 21032225 -141567705 + AT_rich Low_complexity Low_complexity 1 22 0 469 237 81 58 chrX 21032305 21032478 -141567452 + MER5A DNA MER1_type 7 183 -6 295 354 29 11 chrX 21032493 21032668 -141567262 - MER5B DNA MER1_type 0 178 1 701 112 4 63 chrX 21033653 21034167 -141565763 + (TA)n Simple_repeat Simple_repeat 1 483 0 220 336 203 0 chrX 21034605 21034822 -141565108 - MIR SINE MIR -1 261 1 879 243 112 8 chrX 21035464 21035715 -141564215 + MLT1F LTR MaLR 1 277 -265 683 203 14 7 chrX 21035718 21035866 -141564064 + MLT1F LTR MaLR 394 542 0 281 260 63 19 chrX 21036177 21036319 -141563611 - MLT1J1 LTR MaLR -301 149 2 318 280 95 30 chrX 21036752 21036920 -141563010 - MLT1H LTR MaLR -230 319 141 759 160 104 0 chrX 21037311 21037455 -141562475 + FRAM SINE Alu 1 159 -17 1812 125 3 66 chrX 21037532 21037837 -141562093 - AluJb SINE Alu -20 292 7 190 396 81 0 chrX 21037960 21038071 -141561859 - L2 LINE L2 -17 3255 3136 614 358 58 40 chrX 21038277 21038969 -141560961 - L2 LINE L2 -757 2557 1854 301 261 168 17 chrX 21039447 21039566 -141560364 + HAL1 LINE L1 1490 1626 -881 1706 241 39 0 chrX 21042977 21043466 -141556464 + L1ME2 LINE L1 5419 5926 -238 606 269 23 42 chrX 21043488 21043748 -141556182 + L1ME2 LINE L1 5896 6150 -14 333 235 61 108 chrX 21043798 21044011 -141555919 + L1MC4 LINE L1 7836 8038 -4 3857 129 28 28 chrX 21044123 21044759 -141555171 - L1PA15 LINE L1 0 6165 5530 4526 151 1 43 chrX 21045088 21045921 -141554009 + MER52A LTR ERV1 958 1755 0 23 54 0 0 chrX 21046310 21046347 -141553583 + AT_rich Low_complexity Low_complexity 1 37 0 1185 107 0 0 chrX 21046395 21046554 -141553376 + AluSg/x SINE Alu 146 304 -6 241 256 23 12 chrX 21046971 21047057 -141552873 + CT-rich Low_complexity Low_complexity 5 91 0 272 27 27 0 chrX 21047466 21047503 -141552427 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7544 24 21 0 chrX 21047503 21048428 -141551502 - L1PA3 LINE L1 -16 6139 5211 13168 31 0 0 chrX 21048428 21050079 -141549851 + L1P LINE L1 3266 4916 -1230 1471 274 49 51 chrX 21050256 21050847 -141549083 + MER77 LTR ERV1 8 597 -8 342 0 0 0 chrX 21051268 21051306 -141548624 + (TC)n Simple_repeat Simple_repeat 1 38 0 209 391 31 8 chrX 21051820 21051948 -141547982 + MIR SINE MIR 18 148 -114 311 258 11 43 chrX 21052104 21052197 -141547733 + MER5A DNA MER1_type 2 91 -98 207 0 0 0 chrX 21052237 21052260 -141547670 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 222 250 19 96 chrX 21052315 21052419 -141547511 + MER5A DNA MER1_type 54 149 -40 1688 35 0 0 chrX 21053263 21053461 -141546469 + L1PA3 LINE L1 5955 6152 -3 27 29 0 0 chrX 21053688 21053722 -141546208 + AT_rich Low_complexity Low_complexity 1 34 0 1502 289 53 34 chrX 21053811 21054379 -141545551 + MER77 LTR ERV1 25 603 -2 189 359 101 15 chrX 21055304 21055502 -141544428 + MIR SINE MIR 15 229 -33 410 232 85 67 chrX 21055836 21056000 -141543930 + MER5A DNA MER1_type 17 183 -6 189 0 0 0 chrX 21056112 21056133 -141543797 + (GA)n Simple_repeat Simple_repeat 1 21 0 1222 182 78 31 chrX 21056133 21056391 -141543539 - AluJb SINE Alu -39 273 4 1471 271 57 48 chrX 21057258 21057856 -141542074 + MER77 LTR ERV1 1 603 -2 2458 138 62 5 chrX 21058242 21058647 -141541283 - MSTA LTR MaLR 0 428 1 211 206 39 98 chrX 21059487 21059589 -141540341 + MER5A DNA MER1_type 1 96 -93 283 283 90 41 chrX 21059721 21059866 -141540064 + MER5A DNA MER1_type 1 152 -37 2140 119 3 0 chrX 21059973 21060268 -141539662 + AluSx SINE Alu 7 302 -10 2236 106 33 0 chrX 21060288 21060589 -141539341 - AluSp SINE Alu -2 311 1 22 0 0 0 chrX 21060906 21060928 -141539002 + AT_rich Low_complexity Low_complexity 1 22 0 1513 70 0 11 chrX 21060938 21061124 -141538806 - AluSg/x SINE Alu -17 295 112 1578 175 104 123 chrX 21061128 21061510 -141538420 + MER77 LTR ERV1 152 525 -80 922 198 0 6 chrX 21061510 21061672 -141538258 - FRAM SINE Alu -5 161 1 1578 175 104 123 chrX 21061672 21061752 -141538178 + MER77 LTR ERV1 525 605 0 646 292 44 4 chrX 21062462 21062712 -141537218 + MIR SINE MIR 3 262 0 661 345 40 45 chrX 21062752 21063283 -141536647 + L2 LINE L2 1996 2523 -791 27 29 0 0 chrX 21063791 21063825 -141536105 + AT_rich Low_complexity Low_complexity 1 34 0 218 377 92 18 chrX 21064415 21064643 -141535287 + L2 LINE L2 2811 3055 -217 2167 115 0 0 chrX 21064932 21065239 -141534691 - AluSx SINE Alu 0 307 1 22 0 0 0 chrX 21065961 21065983 -141533947 + AT_rich Low_complexity Low_complexity 1 22 0 197 320 53 13 chrX 21066551 21066626 -141533304 - MIR SINE MIR -94 168 91 4203 111 35 3 chrX 21066678 21067311 -141532619 + MER39B LTR ERV1 1 653 0 297 0 0 0 chrX 21067585 21067618 -141532312 + (TG)n Simple_repeat Simple_repeat 1 33 0 1596 158 89 23 chrX 21068131 21068480 -141531450 - LTR49 LTR ERV1 -25 570 199 507 97 204 10 chrX 21068480 21068583 -141531347 + L1M1 LINE L1 16 138 -7427 * 9717 141 32 2 chrX 21068575 21070124 -141529806 + L1M1 LINE L1 1099 2694 -4871 2027 232 114 25 chrX 21070117 21071182 -141528748 + L1ME1 LINE L1 4787 5929 -237 * 238 289 48 0 chrX 21071649 21071753 -141528177 - L1ME LINE L1 -472 5649 5541 21 57 0 0 chrX 21071774 21071809 -141528121 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chrX 21072228 21072256 -141527674 + AT_rich Low_complexity Low_complexity 1 28 0 43 35 0 0 chrX 21072358 21072415 -141527515 + AT_rich Low_complexity Low_complexity 1 57 0 252 278 93 31 chrX 21072670 21072864 -141527066 + L1M4c LINE L1 1557 1762 -4622 335 348 7 0 chrX 21072951 21073092 -141526838 - MLT1F1 LTR MaLR -413 154 13 431 262 50 25 chrX 21073103 21073408 -141526522 + L1M4c LINE L1 2263 2544 -3838 2328 57 3 23 chrX 21073434 21073735 -141526195 + AluY SINE Alu 1 295 -16 3128 134 12 56 chrX 21073739 21074329 -141525601 + MER4B LTR ERV1 1 564 -46 409 280 23 23 chrX 21074368 21074543 -141525387 + L1M4c LINE L1 2558 2732 -3650 431 37 0 0 chrX 21074887 21074941 -141524989 + MADE1 DNA Mariner 1 54 -26 248 234 106 21 chrX 21076081 21076222 -141523708 - L1M4 LINE L1 -3449 2697 2545 23 33 0 0 chrX 21077239 21077269 -141522661 + AT_rich Low_complexity Low_complexity 1 30 0 2331 72 0 0 chrX 21077445 21077738 -141522192 - AluY SINE Alu -18 293 1 21 36 0 0 chrX 21077865 21077893 -141522037 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 21078080 21078103 -141521827 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chrX 21078110 21078135 -141521795 + (TA)n Simple_repeat Simple_repeat 2 26 0 849 207 89 15 chrX 21078351 21078554 -141521376 - MER20 DNA MER1_type -1 218 1 664 270 13 79 chrX 21078554 21078869 -141521061 - L1MDa LINE L1 -6213 327 34 2212 103 0 3 chrX 21078942 21079243 -141520687 + AluSg SINE Alu 6 305 -5 339 327 5 93 chrX 21079254 21079491 -141520439 + MIR SINE MIR 27 241 -21 2627 130 26 28 chrX 21080431 21081129 -141518801 - L1MA4A LINE L1 -595 5708 5007 3769 131 8 0 chrX 21081129 21081718 -141518212 + L1MA4A LINE L1 5704 6297 -6 704 136 0 0 chrX 21081918 21082021 -141517909 + L1PA10 LINE L1 6056 6158 -10 759 323 87 20 chrX 21082042 21082500 -141517430 - LTR16C LTR ERVL 0 491 3 11264 84 5 1 chrX 21082724 21084236 -141515694 + L1P3 LINE L1 8 1525 -4936 7016 40 5 2 chrX 21084237 21085096 -141514834 + L1PA7 LINE L1 5294 6154 0 1419 205 7 4 chrX 21085586 21085864 -141514066 + AluJo SINE Alu 27 305 -7 23 33 0 0 chrX 21085875 21085905 -141514025 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 21086137 21086159 -141513771 + AT_rich Low_complexity Low_complexity 1 22 0 227 333 0 0 chrX 21086419 21086485 -141513445 + L2 LINE L2 3246 3311 -2 376 307 105 33 chrX 21086861 21087376 -141512554 + L1MC4a LINE L1 5308 5859 -1949 881 210 19 0 chrX 21087980 21088142 -141511788 - FAM SINE Alu -9 166 2 644 236 11 22 chrX 21090054 21090232 -141509698 - L1M4 LINE L1 -1555 4591 4416 2241 238 50 6 chrX 21090248 21090926 -141509004 - L1M4 LINE L1 -2828 3318 2611 1968 120 7 17 chrX 21092466 21092766 -141507164 + AluSx SINE Alu 1 297 -15 22 70 0 0 chrX 21092784 21092827 -141507103 + AT_rich Low_complexity Low_complexity 1 43 0 1029 242 23 0 chrX 21093762 21094018 -141505912 + L2 LINE L2 2264 2525 -789 1078 316 71 27 chrX 21094032 21094142 -141505788 + LTR16A LTR ERVL 16 120 -330 4234 18 2 0 chrX 21094142 21094637 -141505293 + L1PA4 LINE L1 5658 6153 -2 1078 316 71 27 chrX 21094637 21094937 -141504993 + LTR16A LTR ERVL 120 444 -6 969 303 35 9 chrX 21095000 21095343 -141504587 + HERV16 LTR ERVL 74 425 -4571 1079 247 20 37 chrX 21095426 21095831 -141504099 + L1MB8 LINE L1 5758 6155 -23 252 0 0 0 chrX 21095897 21095925 -141504005 + (GA)n Simple_repeat Simple_repeat 2 29 0 213 383 47 8 chrX 21096008 21096136 -141503794 - L2 LINE L2 -1 3271 3139 211 174 0 58 chrX 21096478 21096547 -141503383 + (TA)n Simple_repeat Simple_repeat 2 66 0 1449 33 0 0 chrX 21096650 21096831 -141503099 + L1P LINE L1 5014 5194 -952 272 382 49 20 chrX 21097758 21098004 -141501926 - HAL1b LINE L1 -731 617 365 24 32 0 0 chrX 21098278 21098309 -141501621 + AT_rich Low_complexity Low_complexity 1 31 0 2144 111 3 0 chrX 21098309 21098597 -141501333 - AluSx SINE Alu -23 289 1 2033 124 3 0 chrX 21098768 21099098 -141500832 - AluSx SINE Alu 0 331 1 978 270 157 30 chrX 21099265 21099761 -141500169 + MER34B LTR ERV1 5 563 -2 24 53 0 0 chrX 21100235 21100273 -141499657 + AT_rich Low_complexity Low_complexity 1 38 0 1099 206 5 5 chrX 21100385 21100603 -141499327 + MER20 DNA MER1_type 2 219 0 21 0 0 0 chrX 21101672 21101693 -141498237 + AT_rich Low_complexity Low_complexity 1 21 0 519 241 83 79 chrX 21101827 21102080 -141497850 + L1ME3A LINE L1 4528 4781 -1365 646 274 60 49 chrX 21102128 21102478 -141497452 + L1ME3A LINE L1 5810 6163 -7 763 259 19 34 chrX 21102535 21102865 -141497065 + L1MC5 LINE L1 6928 7250 -735 306 323 0 8 chrX 21102871 21102995 -141496935 + L1MC4a LINE L1 7247 7369 -439 * 505 294 52 52 chrX 21102979 21103479 -141496451 + L1MC5 LINE L1 7260 7759 -202 345 62 0 0 chrX 21103516 21103564 -141496366 + (CA)n Simple_repeat Simple_repeat 2 49 0 592 235 114 79 chrX 21103582 21103989 -141495941 - MER110 LTR ERV1 -5 486 38 292 386 43 14 chrX 21104352 21104559 -141495371 - MIR SINE MIR -18 244 32 193 158 0 53 chrX 21104988 21105026 -141494904 - L2 LINE L2 -6 3307 3272 205 232 29 0 chrX 21105153 21105222 -141494708 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chrX 21106109 21106141 -141493789 + AT_rich Low_complexity Low_complexity 1 32 0 264 59 0 0 chrX 21106141 21106175 -141493755 + (CA)n Simple_repeat Simple_repeat 2 35 0 294 220 0 0 chrX 21106311 21106370 -141493560 - MIR SINE MIR 0 262 204 301 230 37 70 chrX 21106517 21106704 -141493226 - L1MC4 LINE L1 -1 8041 7861 221 256 13 51 chrX 21106891 21106969 -141492961 + MIR SINE MIR 174 248 -14 2061 133 48 25 chrX 21108540 21108894 -141491036 + THE1B LTR MaLR 1 362 -2 11711 96 4 1 chrX 21108896 21110471 -141489459 + THE1B-int LTR MaLR 1 1580 0 1993 111 87 29 chrX 21110471 21110815 -141489115 + THE1B LTR MaLR 1 364 0 314 303 15 23 chrX 21112113 21112245 -141487685 - LTR67 LTR ERVL 0 557 427 2164 210 57 77 chrX 21112507 21112859 -141487071 - L1ME1 LINE L1 -168 5998 5640 1918 161 55 0 chrX 21112859 21113189 -141486741 + MER7A DNA MER2_type 1 346 0 2164 210 57 77 chrX 21113189 21113523 -141486407 - L1ME1 LINE L1 -526 5640 5324 1466 247 93 49 chrX 21113523 21114093 -141485837 + MLT1G1 LTR MaLR 1 595 0 5967 102 20 0 chrX 21114146 21115363 -141484567 - L1PA13 LINE L1 0 6163 4954 227 269 30 0 chrX 21115479 21115546 -141484384 - L1MD3 LINE L1 -1327 6668 6600 36 0 0 0 chrX 21117926 21117962 -141481968 + AT_rich Low_complexity Low_complexity 1 36 0 344 277 135 43 chrX 21118446 21118587 -141481343 - MIR SINE MIR -96 166 13 22 0 0 0 chrX 21118607 21118629 -141481301 + AT_rich Low_complexity Low_complexity 1 22 0 772 128 45 39 chrX 21118632 21118788 -141481142 - L1MA8 LINE L1 -21 6270 6114 2022 205 62 4 chrX 21120174 21120643 -141479287 - L1MDb LINE L1 -5149 1394 899 974 230 37 137 chrX 21120801 21121362 -141478568 - L1MDb LINE L1 -6016 524 20 296 140 0 0 chrX 21121364 21121414 -141478516 - L1ME1 LINE L1 -260 5906 5857 625 158 0 35 chrX 21121433 21121547 -141478383 - HY1 scRNA scRNA -2 110 1 24 67 0 0 chrX 21122332 21122377 -141477553 + AT_rich Low_complexity Low_complexity 1 45 0 339 277 59 8 chrX 21122456 21122575 -141477355 - LTR40b LTR ERVL -337 125 1 1661 145 10 44 chrX 21122823 21123119 -141476811 + AluJo SINE Alu 1 286 -26 21 57 0 0 chrX 21123128 21123163 -141476767 + AT_rich Low_complexity Low_complexity 1 35 0 253 226 19 0 chrX 21123691 21123744 -141476186 + GA-rich Low_complexity Low_complexity 1 54 0 5541 150 43 27 chrX 21123891 21125103 -141474827 - L1MA8 LINE L1 0 6291 5072 4492 146 55 22 chrX 21125096 21125965 -141473965 + L1 LINE L1 4128 5025 -1121 * 275 330 110 9 chrX 21126699 21126808 -141473122 + L2 LINE L2 3138 3257 -15 1183 183 55 31 chrX 21127435 21127692 -141472238 - AluJb SINE Alu -2 310 48 235 230 161 35 chrX 21127768 21127855 -141472075 - MIR SINE MIR -67 195 98 1513 168 81 9 chrX 21128048 21128369 -141471561 - MER2 DNA MER2_type 0 344 1 303 319 48 31 chrX 21128514 21128726 -141471204 + MIR SINE MIR 1 262 0 234 343 34 34 chrX 21128920 21129098 -141470832 + L2 LINE L2 2133 2310 -1004 265 256 33 25 chrX 21129359 21129480 -141470450 + (TATATG)n Simple_repeat Simple_repeat 2 123 0 545 339 57 10 chrX 21130073 21130371 -141469559 + MLT1I LTR MaLR 5 316 -93 29 28 0 0 chrX 21130487 21130523 -141469407 + AT_rich Low_complexity Low_complexity 1 36 0 530 257 31 95 chrX 21131845 21132067 -141467863 + L1ME2 LINE L1 5945 6152 -12 1214 153 5 10 chrX 21132224 21132426 -141467504 + AluJb SINE Alu 3 203 -109 1401 40 0 0 chrX 21132426 21132603 -141467327 - L1PA4 LINE L1 -2238 3908 3732 12321 27 1 6 chrX 21132603 21134887 -141465043 + L1PA4 LINE L1 3915 6155 0 770 111 8 0 chrX 21134893 21135010 -141464920 + AluSg/x SINE Alu 190 307 -3 837 196 78 0 chrX 21135700 21135879 -141464051 - L1MA9 LINE L1 -55 6257 6065 677 157 16 0 chrX 21135881 21136002 -141463928 + L1MA9 LINE L1 5830 5952 -360 23 0 0 0 chrX 21136012 21136035 -141463895 + AT_rich Low_complexity Low_complexity 1 23 0 1156 304 105 22 chrX 21137312 21138204 -141461726 - L1MEc LINE L1 -5347 1049 84 200 281 18 18 chrX 21138252 21138309 -141461621 + MER5B DNA MER1_type 118 174 -4 581 201 10 7 chrX 21138685 21138878 -141461052 + MER58A DNA MER1_type 1 224 0 244 337 0 20 chrX 21140040 21140141 -141459789 - L2 LINE L2 -23 3290 3192 213 39 0 0 chrX 21140720 21140746 -141459184 + (CATA)n Simple_repeat Simple_repeat 2 27 0 30 27 0 0 chrX 21141961 21141998 -141457932 + AT_rich Low_complexity Low_complexity 1 37 0 416 356 85 23 chrX 21143456 21143762 -141456168 - L2 LINE L2 -560 2754 2430 2120 211 14 68 chrX 21144003 21144577 -141455353 - LTR55 LTR ERV -5 543 1 245 315 113 43 chrX 21144741 21145043 -141454887 - L2 LINE L2 0 3313 2991 7943 153 19 30 chrX 21146878 21148294 -141451636 + MER21B-int LTR ERV1 2733 4132 -59 2367 164 118 2 chrX 21148378 21148818 -141451112 + MER21B LTR ERV1 2 492 -371 671 237 0 0 chrX 21148829 21148964 -141450966 + FRAM SINE Alu 1 135 -41 1803 170 83 15 chrX 21149726 21150125 -141449805 + MSTB LTR MaLR 1 426 0 1849 135 43 0 chrX 21352955 21353236 -141246694 + AluSg SINE Alu 1 293 -17 615 282 110 9 chrX 21353440 21353759 -141246171 + L1ME LINE L1 5403 5753 -368 1900 145 72 23 chrX 21353760 21354105 -141245825 + THE1B LTR MaLR 3 364 0 11890 78 15 11 chrX 21354105 21355367 -141244563 + THE1B-int LTR MaLR 1 1272 -308 2151 88 3 7 chrX 21355367 21355664 -141244266 + AluSc SINE Alu 1 296 -13 11890 78 15 11 chrX 21355664 21355975 -141243955 + THE1B-int LTR MaLR 1272 1580 0 1158 108 13 0 chrX 21355978 21356135 -141243795 + THE1B LTR MaLR 4 162 -213 903 89 0 0 chrX 21356137 21356261 -141243669 - AluSc SINE Alu -13 296 173 1109 153 54 15 chrX 21356262 21356465 -141243465 + THE1B LTR MaLR 154 364 0 2138 122 3 0 chrX 21356576 21356887 -141243043 - AluSq SINE Alu -1 312 1 2279 94 0 0 chrX 21357552 21357859 -141242071 - AluSc SINE Alu -2 307 1 22 35 0 0 chrX 21357859 21357888 -141242042 + AT_rich Low_complexity Low_complexity 1 29 0 768 174 0 15 chrX 21357941 21358073 -141241857 - FLAM_A SINE Alu 0 133 4 2253 81 3 3 chrX 21358087 21358396 -141241534 - AluY SINE Alu -2 309 1 267 54 0 0 chrX 21358522 21358559 -141241371 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 893 119 42 0 chrX 21358562 21358705 -141241225 - AluSg/x SINE Alu -35 277 129 23 68 0 0 chrX 21358934 21358978 -141240952 + AT_rich Low_complexity Low_complexity 1 44 0 744 134 42 0 chrX 21358981 21359100 -141240830 - AluJb SINE Alu -187 125 2 288 0 0 0 chrX 21359227 21359259 -141240671 + (CA)n Simple_repeat Simple_repeat 1 32 0 2345 62 0 34 chrX 21359322 21359643 -141240287 - AluY SINE Alu -1 310 1 394 237 130 9 chrX 21359654 21359784 -141240146 - MIR SINE MIR -62 146 10 1388 182 7 7 chrX 21359989 21360258 -141239672 + AluJb SINE Alu 11 279 -33 1477 163 0 38 chrX 21361163 21361451 -141238479 + AluJo SINE Alu 13 289 -23 2061 130 0 13 chrX 21361461 21361777 -141238153 + AluSx SINE Alu 1 312 0 345 259 0 0 chrX 21361798 21361883 -141238047 + L1ME4a LINE L1 5745 5829 -292 1959 112 0 48 chrX 21361890 21362022 -141237908 + AluSx SINE Alu 7 144 -168 2383 83 0 3 chrX 21362022 21362335 -141237595 + AluSq SINE Alu 1 312 -1 1959 112 0 48 chrX 21362335 21362515 -141237415 + AluSx SINE Alu 144 304 -8 2187 100 0 0 chrX 21362515 21362816 -141237114 + AluSx SINE Alu 1 301 -11 191 145 48 129 chrX 21363682 21363744 -141236186 - L2 LINE L2 -18 3254 3198 252 86 0 0 chrX 21363975 21364010 -141235920 + (A)n Simple_repeat Simple_repeat 1 35 0 1732 174 0 16 chrX 21364034 21364168 -141235762 + AluJo SINE Alu 4 139 -173 2003 119 0 10 chrX 21364168 21364461 -141235469 + AluSg SINE Alu 1 290 -20 1732 174 0 16 chrX 21364461 21364631 -141235299 + AluJo SINE Alu 139 303 -9 2033 117 7 23 chrX 21364675 21364983 -141234947 + AluSx SINE Alu 1 303 -9 385 294 108 68 chrX 21365119 21365589 -141234341 + L2 LINE L2 1918 2406 -908 895 161 94 0 chrX 21365918 21366067 -141233863 - FAM SINE Alu -12 163 1 1757 136 7 7 chrX 21366078 21366358 -141233572 - AluSx SINE Alu -19 293 14 381 359 3 32 chrX 21366537 21366760 -141233170 + G-rich Low_complexity Low_complexity 1 216 0 * 413 321 0 43 chrX 21366657 21366901 -141233029 + GA-rich Low_complexity Low_complexity 1 233 0 423 294 0 0 chrX 21366954 21367117 -141232813 + G-rich Low_complexity Low_complexity 1 163 0 328 152 0 0 chrX 21367198 21367244 -141232686 - Alu SINE Alu -253 47 2 444 118 0 0 chrX 21367244 21367312 -141232618 + MER63 DNA MER1_type 952 1019 -43 2573 232 105 42 chrX 21367475 21367575 -141232355 - HAL1 LINE L1 -110 2397 2305 1845 151 84 29 chrX 21367575 21367920 -141232010 + MLT1A1 LTR MaLR 2 365 0 2573 232 105 42 chrX 21367920 21368476 -141231454 - HAL1 LINE L1 -202 2305 1661 2417 56 0 0 chrX 21368476 21368778 -141231152 - AluY SINE Alu -9 302 1 2573 232 105 42 chrX 21368778 21369060 -141230870 - HAL1 LINE L1 -846 1661 1398 1611 158 6 54 chrX 21369101 21369418 -141230512 - AluJb SINE Alu -10 302 1 1724 184 10 0 chrX 21369511 21369816 -141230114 - AluSg SINE Alu -2 308 1 326 229 115 21 chrX 21369889 21369985 -141229945 + L2 LINE L2 3197 3301 -12 2348 84 0 0 chrX 21370855 21371164 -141228766 + AluSc SINE Alu 1 309 0 512 186 60 92 chrX 21371901 21372088 -141227842 - L1ME2 LINE L1 -14 6152 5974 308 226 75 19 chrX 21372208 21372314 -141227616 + MER20 DNA MER1_type 1 112 -107 2289 82 0 0 chrX 21372573 21372865 -141227065 - AluSg SINE Alu -18 292 1 1420 210 102 12 chrX 21373869 21374193 -141225737 - LTR16C LTR ERVL -1 490 138 1745 150 3 13 chrX 21374207 21374521 -141225409 - AluJb SINE Alu -1 311 1 745 329 90 38 chrX 21374524 21374855 -141225075 - L2 LINE L2 -602 2712 2347 2125 96 56 83 chrX 21374855 21375229 -141224701 + THE1B LTR MaLR 1 364 0 745 329 90 38 chrX 21375229 21375377 -141224553 - L2 LINE L2 -967 2347 2208 348 200 71 12 chrX 21375540 21375625 -141224305 + MIR SINE MIR 117 206 -56 293 43 22 0 chrX 21375940 21375986 -141223944 + AluSc SINE Alu 252 298 -1 2056 103 36 7 chrX 21376576 21376877 -141223053 + AluSg SINE Alu 1 310 0 1043 89 0 0 chrX 21377060 21377195 -141222735 - AluY SINE Alu -176 135 1 1548 163 0 34 chrX 21377197 21377522 -141222408 - AluJb SINE Alu 0 315 1 2230 105 0 10 chrX 21378097 21378411 -141221519 - AluSx SINE Alu -1 311 1 1580 155 86 14 chrX 21378614 21378905 -141221025 - AluJb SINE Alu 0 312 1 21 0 0 0 chrX 21379070 21379091 -141220839 + AT_rich Low_complexity Low_complexity 1 21 0 931 114 23 69 chrX 21379968 21380143 -141219787 + L1P4 LINE L1 5596 5762 -403 1705 142 7 7 chrX 21380143 21380438 -141219492 - AluSq SINE Alu -14 299 5 564 295 21 18 chrX 21380443 21380724 -141219206 - AluY SINE Alu -17 294 13 1875 112 8 0 chrX 21381166 21381434 -141218496 - AluSx SINE Alu -38 274 5 1982 115 10 3 chrX 21382159 21382455 -141217475 + AluSx SINE Alu 2 299 -13 1713 139 3 70 chrX 21383321 21383651 -141216279 + AluJo SINE Alu 1 308 -4 2099 112 0 0 chrX 21383654 21383939 -141215991 + AluSx SINE Alu 1 285 -27 333 62 0 0 chrX 21383946 21383994 -141215936 + (CGAAA)n Simple_repeat Simple_repeat 3 50 0 1894 169 97 3 chrX 21384046 21384377 -141215553 + MSTB LTR MaLR 1 362 -64 1039 128 0 0 chrX 21384377 21384533 -141215397 - AluY SINE Alu -15 296 141 560 327 52 12 chrX 21384640 21384781 -141215149 + L1MEd LINE L1 503 660 -5870 2106 78 20 10 chrX 21384781 21385074 -141214856 - AluSq SINE Alu -17 296 1 560 327 52 12 chrX 21385074 21385183 -141214747 + L1MEd LINE L1 660 763 -5767 484 261 90 26 chrX 21385249 21385559 -141214371 + L1MEd LINE L1 1752 2081 -4640 1904 132 3 13 chrX 21385763 21386066 -141213864 + AluSx SINE Alu 1 300 -12 456 233 121 88 chrX 21386069 21386341 -141213589 + L1MEd LINE L1 2372 2654 -3888 1216 230 143 28 chrX 21386368 21386759 -141213171 - MLT1J2 LTR MaLR -14 436 1 400 196 10 31 chrX 21386764 21386861 -141213069 + L1MEd LINE L1 2660 2754 -3786 2240 89 3 13 chrX 21386863 21387177 -141212753 + AluSx SINE Alu 1 311 -1 250 269 120 28 chrX 21387712 21387820 -141212110 - L2 LINE L2 -12 3301 3184 188 29 0 88 chrX 21388511 21388545 -141211385 + (A)n Simple_repeat Simple_repeat 1 31 0 1060 139 27 37 chrX 21389140 21389327 -141210603 - MER5A DNA MER1_type 0 189 5 1852 112 31 20 chrX 21390124 21390418 -141209512 - AluSx SINE Alu -15 297 1 2274 97 0 0 chrX 21390418 21390726 -141209204 - AluSx SINE Alu -4 308 1 2398 80 0 0 chrX 21390855 21391167 -141208763 - AluSx SINE Alu 0 312 1 1135 140 0 45 chrX 21392261 21392411 -141207519 + AluJo SINE Alu 114 254 -58 2557 155 27 0 chrX 21392411 21392824 -141207106 + MSTA LTR MaLR 5 428 0 1135 140 0 45 chrX 21392824 21392873 -141207057 + AluJo SINE Alu 254 304 -8 2167 114 0 0 chrX 21393085 21393392 -141206538 - AluSx SINE Alu -3 309 3 4146 154 48 34 chrX 21393403 21394038 -141205892 + Tigger6a DNA MER2_type 154 804 -793 559 71 71 0 chrX 21394038 21394123 -141205807 - L1MB8 LINE L1 0 6178 6088 4146 154 48 34 chrX 21394123 21394284 -141205646 + Tigger6a DNA MER2_type 804 961 -122 1655 106 64 11 chrX 21394462 21394748 -141205182 + AluSx SINE Alu 12 312 0 2143 122 0 0 chrX 21395778 21396090 -141203840 + AluSx SINE Alu 1 312 0 574 37 25 0 chrX 21396096 21396177 -141203753 + (TA)n Simple_repeat Simple_repeat 2 84 0 589 188 73 129 chrX 21396273 21396545 -141203385 - L1M4b LINE L1 -5394 1465 1209 461 343 0 15 chrX 21397159 21397543 -141202387 + G-rich Low_complexity Low_complexity 1 378 0 594 256 58 0 chrX 21397843 21398015 -141201915 - MIR SINE MIR 0 262 81 219 273 180 33 chrX 21398047 21398197 -141201733 + L2 LINE L2 2917 3088 -184 740 173 23 8 chrX 21398221 21398354 -141201576 - MER5B DNA MER1_type -43 135 1 230 244 61 24 chrX 21398572 21398654 -141201276 + L2 LINE L2 3228 3312 -1 202 134 0 179 chrX 21399205 21399230 -141200700 + MER5A DNA MER1_type 52 59 -130 2117 101 0 7 chrX 21399230 21399528 -141200402 + AluSg SINE Alu 1 296 -14 202 134 0 179 chrX 21399528 21399569 -141200361 + MER5A DNA MER1_type 59 106 -83 601 216 135 18 chrX 21399611 21399833 -141200097 - MER20B DNA MER1_type 0 783 536 180 374 137 6 chrX 21400043 21400225 -141199705 + L2 LINE L2 1716 1921 -1393 2230 103 0 0 chrX 21400665 21400967 -141198963 - AluSq SINE Alu -10 303 2 182 231 0 77 chrX 21401007 21401072 -141198858 - MER5B DNA MER1_type -11 167 108 187 111 28 28 chrX 21401018 21401054 -141198876 + MER5A DNA MER1_type 33 68 -121 1914 131 7 0 chrX 21401084 21401390 -141198540 - AluSx SINE Alu 0 308 1 203 346 44 15 chrX 21401456 21401592 -141198338 - MIR SINE MIR -48 214 75 1287 144 43 0 chrX 21401658 21401866 -141198064 - AluJo SINE Alu -11 301 85 224 279 45 90 chrX 21401868 21401979 -141197951 + MIR3 SINE MIR 55 160 -48 384 211 44 26 chrX 21402088 21402202 -141197728 - MIR SINE MIR -1 261 146 1327 134 13 25 chrX 21402213 21402451 -141197479 - AluSx SINE Alu -20 292 58 1699 121 23 26 chrX 21403061 21403329 -141196601 + AluSq SINE Alu 41 304 -9 2082 93 31 10 chrX 21403375 21403664 -141196266 + AluSx SINE Alu 1 295 -17 3581 72 36 0 chrX 21403706 21404180 -141195750 + L1PA8 LINE L1 5680 6170 -2 21 0 0 0 chrX 21404379 21404400 -141195530 + AT_rich Low_complexity Low_complexity 1 21 0 997 161 0 17 chrX 21404500 21404674 -141195256 + AluSg SINE Alu 1 171 -139 209 261 0 0 chrX 21405120 21405166 -141194764 + GA-rich Low_complexity Low_complexity 3 48 0 214 319 53 11 chrX 21405714 21405808 -141194122 + MIR3 SINE MIR 96 193 -15 436 226 19 9 chrX 21406127 21406233 -141193697 + MIR SINE MIR 12 118 -144 2264 89 0 7 chrX 21406251 21406535 -141193395 + AluSq SINE Alu 1 284 -29 195 42 0 0 chrX 21406535 21406559 -141193371 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 915 160 53 0 chrX 21406689 21406839 -141193091 - AluJo SINE Alu -68 244 87 1750 52 4 48 chrX 21407666 21407895 -141192035 - AluY SINE Alu -10 301 83 2461 89 0 0 chrX 21407928 21408232 -141191698 - AluSg SINE Alu -6 304 1 1747 176 7 17 chrX 21408234 21408535 -141191395 - AluJo SINE Alu -14 298 1 235 65 43 0 chrX 21410259 21410305 -141189625 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2285 105 3 13 chrX 21411067 21411380 -141188550 + AluSg SINE Alu 1 310 0 310 317 108 11 chrX 21411656 21411842 -141188088 + MIR SINE MIR 59 262 0 500 115 0 69 chrX 21413149 21413236 -141186694 + L1MB8 LINE L1 5858 5938 -240 2205 114 3 0 chrX 21413237 21413535 -141186395 + AluSx SINE Alu 1 299 -13 966 212 39 80 chrX 21413553 21413916 -141186014 + L1MC4 LINE L1 7695 8042 0 742 236 167 41 chrX 21416406 21416771 -141183159 + L2 LINE L2 2894 3304 -9 378 309 81 7 chrX 21416816 21416952 -141182978 - MIR SINE MIR -115 147 2 1907 82 8 16 chrX 21417172 21417465 -141182465 + AluSg SINE Alu 31 321 0 232 302 58 0 chrX 21417541 21417627 -141182303 + L2 LINE L2 2969 3059 -213 1564 170 84 33 chrX 21417627 21417986 -141181944 - Charlie4a DNA MER1_type 0 508 132 242 162 69 103 chrX 21418128 21418267 -141181663 + MLT1G3 LTR MaLR 157 363 -232 416 227 27 127 chrX 21418340 21418490 -141181440 - Charlie4a DNA MER1_type -373 135 1 674 131 10 0 chrX 21419256 21419355 -141180575 + AluSg SINE Alu 2 101 -209 1636 93 0 0 chrX 21419553 21419758 -141180172 - AluSg/x SINE Alu -10 300 96 228 135 0 0 chrX 21419841 21419878 -141180052 + (TG)n Simple_repeat Simple_repeat 2 38 0 733 178 0 0 chrX 21420003 21420121 -141179809 + FLAM_C SINE Alu 1 118 -15 24 53 0 0 chrX 21420121 21420159 -141179771 + AT_rich Low_complexity Low_complexity 1 38 0 545 253 148 11 chrX 21420444 21420626 -141179304 - L1MC4a LINE L1 -1905 5903 5697 201 262 60 12 chrX 21420629 21420713 -141179217 - L3 LINE CR1 -167 1410 1323 223 145 0 32 chrX 21421312 21421374 -141178556 + (TA)n Simple_repeat Simple_repeat 1 60 0 272 354 98 23 chrX 21421565 21421658 -141178272 - L2 LINE L2 -1028 2286 2201 2265 116 0 0 chrX 21421658 21421961 -141177969 + AluSx SINE Alu 1 303 -9 272 354 98 23 chrX 21421961 21422254 -141177676 - L2 LINE L2 -1113 2201 1871 1876 162 17 34 chrX 21422565 21422923 -141177007 + LTR1 LTR ERV1 431 782 -3 224 236 153 28 chrX 21422984 21423128 -141176802 - L2 LINE L2 -303 2969 2808 418 175 29 16 chrX 21423445 21423463 -141176467 + L1MA8 LINE L1 5912 5928 -363 766 117 70 0 chrX 21423463 21423591 -141176339 - L1MA8 LINE L1 -4 6287 6151 418 175 29 16 chrX 21423591 21423678 -141176252 + L1MA8 LINE L1 5928 6018 -273 328 311 0 0 chrX 21423687 21423809 -141176121 + T-rich Low_complexity Low_complexity 1 122 0 631 246 61 25 chrX 21423951 21424228 -141175702 + AluJb SINE Alu 1 287 -15 1102 135 109 31 chrX 21424255 21424484 -141175446 - Charlie1b DNA MER1_type -177 346 100 1861 150 14 3 chrX 21424501 21424788 -141175142 - AluSx SINE Alu -22 290 1 1320 188 37 18 chrX 21425393 21425665 -141174265 - AluJb SINE Alu -20 292 16 360 226 9 38 chrX 21425706 21425812 -141174118 - FRAM SINE Alu 0 166 64 22 0 0 0 chrX 21426076 21426098 -141173832 + GC_rich Low_complexity Low_complexity 1 22 0 38 75 0 0 chrX 21426193 21426273 -141173657 + GC_rich Low_complexity Low_complexity 1 80 0 223 105 93 35 chrX 21426300 21426386 -141173544 + (CCGCG)n Simple_repeat Simple_repeat 3 93 0 307 216 13 14 chrX 21426417 21426516 -141173414 + AluJo SINE Alu 79 143 -159 1954 118 7 0 chrX 21426516 21426788 -141173142 + AluSg SINE Alu 25 298 -12 2162 106 0 3 chrX 21427007 21427327 -141172603 - AluSx SINE Alu 0 319 1 1279 61 6 0 chrX 21427363 21427528 -141172402 + L1PA4 LINE L1 5987 6152 -3 442 190 0 0 chrX 21428538 21428617 -141171313 + L1MC5 LINE L1 6997 7075 -886 310 154 0 0 chrX 21428959 21429011 -141170919 - AluSp/q SINE Alu -1 302 251 195 187 13 53 chrX 21429025 21429100 -141170830 + C-rich Low_complexity Low_complexity 3 74 0 483 325 2 24 chrX 21429120 21429525 -141170405 + C-rich Low_complexity Low_complexity 1 396 0 232 154 31 0 chrX 21429732 21429797 -141170133 - L1MA1 LINE L1 -260 6042 5976 2032 133 11 0 chrX 21430142 21430427 -141169503 + AluSq SINE Alu 1 288 -25 25 31 0 0 chrX 21431047 21431079 -141168851 + AT_rich Low_complexity Low_complexity 1 32 0 2429 81 0 7 chrX 21431408 21431704 -141168226 + AluSq SINE Alu 3 296 -17 586 159 9 44 chrX 21431704 21431817 -141168113 - L1MB7 LINE L1 -61 6123 6015 1119 148 68 4 chrX 21431824 21432061 -141167869 + L1MB5 LINE L1 5890 6141 -33 21 0 0 0 chrX 21432146 21432167 -141167763 + GC_rich Low_complexity Low_complexity 1 21 0 2297 84 0 0 chrX 21432590 21432918 -141167012 + AluSq SINE Alu 1 328 0 2203 113 7 10 chrX 21433243 21433552 -141166378 - AluSx SINE Alu -2 310 3 2626 52 3 0 chrX 21434313 21434618 -141165312 - AluY SINE Alu -5 306 1 291 258 65 11 chrX 21434618 21434711 -141165219 - MER5A DNA MER1_type -33 156 59 447 177 93 13 chrX 21435014 21435169 -141164761 + L1ME3A LINE L1 5944 6151 -19 2189 131 17 12 chrX 21435171 21435515 -141164415 + MER47A DNA MER2_type 21 366 0 387 332 107 21 chrX 21435592 21435881 -141164049 + L2 LINE L2 1871 2202 -1112 2242 119 0 0 chrX 21435881 21436184 -141163746 - AluSx SINE Alu -9 303 1 387 332 107 21 chrX 21436184 21436277 -141163653 + L2 LINE L2 2202 2286 -1028 203 181 7 43 chrX 21436468 21436606 -141163324 + (TA)n Simple_repeat Simple_repeat 1 133 0 1143 121 6 12 chrX 21436747 21436913 -141163017 - AluSq SINE Alu -17 296 132 1974 94 0 22 chrX 21436914 21437190 -141162740 - AluSx SINE Alu -16 296 27 1955 84 4 0 chrX 21437190 21437441 -141162489 + AluY SINE Alu 45 296 -15 295 54 0 0 chrX 21437441 21437478 -141162452 - AluSx SINE Alu -265 37 1 2149 70 23 50 chrX 21437795 21438117 -141161813 + AluY SINE Alu 1 311 0 2288 112 0 10 chrX 21438219 21438531 -141161399 - AluSq SINE Alu -4 309 1 2169 94 57 13 chrX 21438788 21439087 -141160843 - AluSx SINE Alu 0 312 1 2173 116 7 3 chrX 21439173 21439476 -141160454 + AluSq SINE Alu 1 304 -9 2082 93 31 10 chrX 21439522 21439811 -141160119 + AluSx SINE Alu 1 295 -17 3594 70 36 0 chrX 21439853 21440327 -141159603 + L1PA8 LINE L1 5680 6170 -2 21 0 0 0 chrX 21440526 21440547 -141159383 + AT_rich Low_complexity Low_complexity 1 21 0 2319 96 0 0 chrX 21440647 21440939 -141158991 + AluSg SINE Alu 1 292 -18 275 200 17 0 chrX 21440943 21441003 -141158927 + L1ME4a LINE L1 5994 6054 -67 330 234 62 125 chrX 21441044 21441236 -141158694 + MARNA DNA Mariner 345 524 -62 1643 169 4 11 chrX 21441325 21441598 -141158332 - AluJo SINE Alu -39 273 3 2075 118 0 23 chrX 21442364 21442670 -141157260 + AluJb SINE Alu 1 299 -13 2119 140 0 13 chrX 21442753 21443061 -141156869 - AluJb SINE Alu -8 304 1 228 268 55 87 chrX 21444933 21445050 -141154880 - MIR SINE MIR -55 207 97 2084 133 0 3 chrX 21445050 21445358 -141154572 + AluSx SINE Alu 1 307 -5 228 268 55 87 chrX 21445358 21445423 -141154507 - MIR SINE MIR -165 97 31 510 256 58 0 chrX 21446359 21446531 -141153399 - MIR SINE MIR 0 262 81 207 267 164 26 chrX 21446563 21446679 -141153251 + L2 LINE L2 2917 3048 -224 676 173 23 8 chrX 21446737 21446870 -141153060 - MER5B DNA MER1_type -43 135 1 189 247 52 26 chrX 21447093 21447170 -141152760 + L2 LINE L2 3234 3312 -1 2239 101 0 7 chrX 21447746 21448044 -141151886 + AluSg SINE Alu 1 296 -14 181 138 0 0 chrX 21448056 21448085 -141151845 + MER5A DNA MER1_type 78 106 -83 616 216 135 18 chrX 21448127 21448349 -141151581 - MER20B DNA MER1_type 0 783 536 481 229 209 46 chrX 21448804 21449163 -141150767 + MLT1L LTR MaLR 8 307 -308 2514 57 7 0 chrX 21449163 21449463 -141150467 - AluY SINE Alu -9 302 1 481 229 209 46 chrX 21449463 21449578 -141150352 + MLT1L LTR MaLR 307 608 -7 2188 83 3 14 chrX 21449764 21450088 -141149842 + AluSg SINE Alu 1 321 0 229 302 58 0 chrX 21450164 21450250 -141149680 + L2 LINE L2 2969 3059 -213 1564 170 84 33 chrX 21450250 21450609 -141149321 - Charlie4a DNA MER1_type 0 508 132 340 184 113 71 chrX 21450751 21450964 -141148966 + MLT1H LTR MaLR 232 549 0 491 200 27 127 chrX 21450964 21451114 -141148816 - Charlie4a DNA MER1_type -373 135 1 183 367 0 25 chrX 21451199 21451278 -141148652 + L2 LINE L2 3234 3310 -3 191 293 0 0 chrX 21451290 21451331 -141148599 + L2 LINE L2 3137 3177 -95 617 181 156 0 chrX 21451341 21451501 -141148429 - MIR SINE MIR -34 228 44 670 293 76 0 chrX 21453077 21453302 -141146628 - MIR SINE MIR -6 256 15 1171 165 58 9 chrX 21453434 21453658 -141146272 - MER90 LTR ERV1 0 614 380 368 200 211 0 chrX 21453656 21453746 -141146184 - MER90 LTR ERV1 -505 109 1 * 1811 152 150 17 chrX 21453879 21454300 -141145630 + Charlie4a DNA MER1_type 32 508 0 530 231 75 8 chrX 21454390 21454524 -141145406 - MIR3 SINE MIR -13 195 53 248 217 100 0 chrX 21454552 21454612 -141145318 - L2 LINE L2 -47 3225 3160 218 315 45 9 chrX 21454623 21454734 -141145196 - L2 LINE L2 -580 2734 2620 347 270 127 53 chrX 21455222 21455411 -141144519 - MIR SINE MIR -40 222 20 2440 90 0 3 chrX 21455414 21455725 -141144205 - AluSx SINE Alu -2 310 1 2315 98 0 0 chrX 21456612 21456909 -141143021 - AluY SINE Alu -14 297 1 1726 123 36 22 chrX 21457134 21457410 -141142520 + AluSg SINE Alu 6 285 -25 236 222 19 0 chrX 21457418 21457472 -141142458 + L1MC/D LINE L1 5599 5653 -468 248 291 87 24 chrX 21457474 21457601 -141142329 + L1MC/D LINE L1 5679 5813 -1995 1211 132 0 0 chrX 21457837 21458011 -141141919 - AluSg/x SINE Alu -10 302 129 1213 91 134 16 chrX 21458966 21459153 -141140777 + AluSg/x SINE Alu 76 284 -28 2217 108 3 0 chrX 21459357 21459654 -141140276 - AluSx SINE Alu -14 298 1 742 280 8 55 chrX 21459727 21459872 -141140058 + MIR SINE MIR 20 170 -92 2049 89 8 0 chrX 21459872 21460130 -141139800 + AluSp SINE Alu 1 260 -53 * 2219 76 3 7 chrX 21460129 21460417 -141139513 + AluSg SINE Alu 9 295 -15 742 280 8 55 chrX 21460130 21460507 -141139423 + MIR SINE MIR 170 244 -18 746 294 0 0 chrX 21460549 21460702 -141139228 - L2 LINE L2 -4 3268 3116 294 318 0 18 chrX 21460759 21460869 -141139061 - MIR SINE MIR -71 137 30 22 56 0 0 chrX 21461835 21461871 -141138059 + AT_rich Low_complexity Low_complexity 1 36 0 2368 98 0 0 chrX 21461876 21462172 -141137758 + AluSx SINE Alu 1 296 -16 2250 99 0 0 chrX 21462321 21462604 -141137326 + AluSx SINE Alu 1 283 -29 2336 103 0 0 chrX 21462944 21463246 -141136684 - AluSq SINE Alu -10 303 2 184 111 28 28 chrX 21463297 21463333 -141136597 + MER5A DNA MER1_type 33 68 -121 1923 45 0 9 chrX 21463362 21463608 -141136322 - AluY SINE Alu 0 307 64 14330 85 14 43 chrX 21463617 21465756 -141134174 - L1M1 LINE L1 -3938 3627 1550 2422 68 7 0 chrX 21466139 21466435 -141133495 + AluSq SINE Alu 1 298 -15 1584 171 0 41 chrX 21467210 21467502 -141132428 - AluSx SINE Alu -3 309 30 623 309 78 0 chrX 21467504 21467621 -141132309 - MIR SINE MIR -16 246 140 2375 97 3 0 chrX 21467621 21467929 -141132001 + AluSx SINE Alu 1 309 -3 623 309 78 0 chrX 21467929 21468028 -141131902 - MIR SINE MIR -122 140 13 1736 115 19 27 chrX 21468923 21469184 -141130746 + AluSx SINE Alu 41 299 -13 1148 61 0 0 chrX 21469208 21469340 -141130590 + AluSq/x SINE Alu 12 143 -169 1936 118 7 0 chrX 21469340 21469612 -141130318 + AluSg SINE Alu 25 298 -12 2133 106 0 3 chrX 21469831 21470151 -141129779 - AluSx SINE Alu 0 319 1 1412 54 0 0 chrX 21470187 21470353 -141129577 + L1PA4 LINE L1 5987 6152 -3 2271 128 0 0 chrX 21470864 21471176 -141128754 - AluSx SINE Alu 0 312 1 2514 80 0 0 chrX 21471305 21471617 -141128313 - AluSx SINE Alu 0 312 1 2229 93 3 0 chrX 21472267 21472558 -141127372 + AluY SINE Alu 1 292 -19 210 37 0 0 chrX 21473017 21473044 -141126886 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1701 77 0 30 chrX 21473110 21473343 -141126587 - L1PA13 LINE L1 0 6163 5938 1529 158 16 4 chrX 21473343 21473597 -141126333 - L1MB5 LINE L1 -32 6142 5886 590 159 9 44 chrX 21473600 21473713 -141126217 + L1MB7 LINE L1 6015 6123 -61 2441 77 0 7 chrX 21473713 21474011 -141125919 - AluSq SINE Alu -17 296 1 8065 106 15 15 chrX 21474011 21474668 -141125262 + Tigger1 DNA MER2_type 46 705 -1713 2515 61 0 0 chrX 21474668 21474964 -141124966 + AluY SINE Alu 16 311 0 8065 106 15 15 chrX 21474964 21475445 -141124485 + Tigger1 DNA MER2_type 704 1184 -1234 2504 65 3 3 chrX 21475446 21475755 -141124175 + AluY SINE Alu 3 311 0 815 115 25 16 chrX 21475755 21475877 -141124053 + Tigger1 DNA MER2_type 1467 1589 -829 1510 139 124 33 chrX 21475877 21476151 -141123779 + AluJo SINE Alu 1 299 -13 1076 92 0 0 chrX 21476151 21476292 -141123638 + Tigger1 DNA MER2_type 2086 2226 -192 722 212 0 0 chrX 21476292 21476424 -141123506 - FLAM_C SINE Alu -10 133 2 1164 125 52 5 chrX 21476427 21476619 -141123311 + Tigger1 DNA MER2_type 2218 2418 0 428 260 88 50 chrX 21476880 21477061 -141122869 - MIR SINE MIR -18 244 57 705 186 8 0 chrX 21477118 21477236 -141122694 - Tigger6a DNA MER2_type -8 1075 957 790 157 0 0 chrX 21477236 21477351 -141122579 + FLAM_A SINE Alu 20 134 -8 4277 153 47 34 chrX 21477354 21477515 -141122415 - Tigger6a DNA MER2_type -636 961 804 588 71 71 0 chrX 21477515 21477600 -141122330 + L1MB8 LINE L1 6088 6178 0 4277 153 47 34 chrX 21477600 21478240 -141121690 - Tigger6a DNA MER2_type -793 804 149 2482 72 0 0 chrX 21478244 21478536 -141121394 + AluSx SINE Alu 1 292 -20 897 142 0 8 chrX 21478545 21478679 -141121251 + FLAM_C SINE Alu 1 133 0 371 167 11 0 chrX 21478710 21478800 -141121130 + (TG)n Simple_repeat Simple_repeat 2 92 0 1156 134 88 10 chrX 21479089 21479138 -141120792 + AluJo SINE Alu 86 130 -182 2115 89 41 24 chrX 21479138 21479430 -141120500 + AluSq SINE Alu 1 297 -16 1156 134 88 10 chrX 21479430 21479574 -141120356 + AluJo SINE Alu 130 294 -18 209 348 159 29 chrX 21479768 21479906 -141120024 - L2 LINE L2 -118 3154 2999 1868 129 50 0 chrX 21479940 21480107 -141119823 - AluSx SINE Alu -20 292 104 1257 22 0 0 chrX 21480107 21480245 -141119685 - L1PA5 LINE L1 -3 6151 6014 1868 129 50 0 chrX 21480245 21480355 -141119575 - AluSx SINE Alu -208 104 1 2331 100 6 3 chrX 21480386 21480697 -141119233 - AluSx SINE Alu 0 312 1 2403 82 0 0 chrX 21481310 21481602 -141118328 - AluSg SINE Alu -18 292 1 1567 238 79 41 chrX 21482610 21482944 -141116986 - LTR16C LTR ERVL -5 486 129 2365 92 3 3 chrX 21482944 21483250 -141116680 - AluSp SINE Alu -1 312 7 1567 238 79 41 chrX 21483250 21483356 -141116574 - LTR16C LTR ERVL -362 129 29 2318 74 7 14 chrX 21483421 21483717 -141116213 - AluSx SINE Alu -16 296 3 585 263 83 0 chrX 21486141 21486297 -141113633 - MLT1J LTR MaLR -338 173 5 512 249 136 37 chrX 21486372 21486517 -141113413 - L1ME4a LINE L1 -76 6045 5916 2334 85 10 0 chrX 21486517 21486823 -141113107 - AluSp SINE Alu -4 309 1 512 249 136 37 chrX 21486823 21487031 -141112899 - L1ME4a LINE L1 -205 5916 5657 496 323 0 6 chrX 21487015 21487179 -141112751 - L1MEc LINE L1 -3311 3071 2909 * 531 130 0 0 chrX 21487188 21487257 -141112673 - AluJ/FLAM SINE Alu -241 71 3 366 217 7 94 chrX 21487258 21487296 -141112634 - L1MEc LINE L1 -3755 2627 2587 2389 86 3 13 chrX 21487296 21487611 -141112319 - AluSx SINE Alu 0 312 1 366 217 7 94 chrX 21487611 21487710 -141112220 - L1MEc LINE L1 -3795 2587 2502 1205 230 143 28 chrX 21487715 21488106 -141111824 + MLT1J2 LTR MaLR 1 436 -14 379 269 66 70 chrX 21488133 21488360 -141111570 - L1MEc LINE L1 -3888 2496 2271 1997 132 3 13 chrX 21488408 21488711 -141111219 - AluSx SINE Alu -12 300 1 522 261 90 26 chrX 21488915 21489225 -141110705 - L1MEc LINE L1 -4640 1923 1594 770 259 75 50 chrX 21489291 21489400 -141110530 - L1MEc LINE L1 -5767 605 500 2214 78 20 10 chrX 21489400 21489693 -141110237 + AluSq SINE Alu 1 296 -17 770 259 75 50 chrX 21489693 21489903 -141110027 - L1MEc LINE L1 -5872 500 278 299 310 0 10 chrX 21489949 21490049 -141109881 - L1ME4a LINE L1 -458 5663 5565 3173 242 72 42 chrX 21490313 21490687 -141109243 + HAL1 LINE L1 2 363 -2144 2604 148 16 69 chrX 21490687 21491180 -141108750 + MLT1C LTR MaLR 1 467 0 3173 242 72 42 chrX 21491180 21491610 -141108320 + HAL1 LINE L1 363 844 -1663 2333 107 0 3 chrX 21491610 21491919 -141108011 + AluSx SINE Alu 1 308 -4 3173 242 72 42 chrX 21491919 21492109 -141107821 + HAL1 LINE L1 844 1027 -1480 2340 94 10 0 chrX 21492112 21492420 -141107510 + AluSp SINE Alu 1 311 -2 1694 151 7 56 chrX 21492515 21492819 -141107111 + AluJb SINE Alu 1 289 -23 2680 232 104 44 chrX 21492873 21493155 -141106775 + HAL1 LINE L1 1398 1662 -845 2516 56 0 0 chrX 21493155 21493457 -141106473 + AluY SINE Alu 1 302 -9 2680 232 104 44 chrX 21493457 21494013 -141105917 + HAL1 LINE L1 1662 2302 -205 1970 145 84 29 chrX 21494013 21494358 -141105572 - MLT1A1 LTR MaLR 0 365 2 2680 232 104 44 chrX 21494358 21494472 -141105458 + HAL1 LINE L1 2302 2408 -99 992 123 24 194 chrX 21494621 21494688 -141105242 - MER63 DNA MER1_type -43 1017 940 1928 153 0 10 chrX 21494688 21494988 -141104942 + AluJb SINE Alu 1 297 -15 992 123 24 194 chrX 21494988 21495155 -141104775 - MER63 DNA MER1_type -120 940 856 2280 93 7 0 chrX 21495155 21495446 -141104484 - AluSq SINE Alu -20 293 1 992 123 24 194 chrX 21495446 21495551 -141104379 - MER63 DNA MER1_type -204 856 735 346 308 77 20 chrX 21495582 21495777 -141104153 - L1ME3A LINE L1 -3 6167 5962 634 184 77 46 chrX 21495856 21496052 -141103878 - L1MC5 LINE L1 -430 7531 7330 2093 142 3 0 chrX 21496065 21496374 -141103556 - AluJb SINE Alu -2 310 1 2046 119 6 49 chrX 21496903 21497230 -141102700 + AluSq SINE Alu 1 313 0 1381 249 22 78 chrX 21498562 21499061 -141100869 + LTR16C LTR ERVL 13 483 -8 220 264 11 69 chrX 21499296 21499383 -141100547 + MIR3 SINE MIR 116 197 -11 431 153 0 0 chrX 21499386 21499458 -141100472 + L1M4 LINE L1 3571 3642 -2504 776 236 48 5 chrX 21499459 21499649 -141100281 + L1MD3 LINE L1 7571 7751 -231 1880 94 76 4 chrX 21499649 21499924 -141100006 - AluSx SINE Alu -17 295 1 776 236 48 5 chrX 21499924 21499946 -141099984 + L1MD3 LINE L1 7751 7981 -1 259 262 84 49 chrX 21500626 21500756 -141099174 - L1M4 LINE L1 -3734 2412 2288 2398 81 0 0 chrX 21500756 21501051 -141098879 - AluSx SINE Alu -17 295 1 259 262 84 49 chrX 21501051 21501183 -141098747 - L1M4 LINE L1 -3858 2288 2141 1764 132 62 4 chrX 21501270 21501542 -141098388 - AluJo SINE Alu -24 288 1 2500 56 0 3 chrX 21501837 21502139 -141097791 - AluY SINE Alu -9 302 2 2449 86 0 3 chrX 21502385 21502698 -141097232 + AluSx SINE Alu 1 312 0 2188 95 3 3 chrX 21502700 21502995 -141096935 + AluY SINE Alu 1 295 -16 21 71 0 0 chrX 21503287 21503329 -141096601 + AT_rich Low_complexity Low_complexity 1 42 0 3434 204 33 18 chrX 21503486 21504578 -141095352 - L1ME1 LINE L1 -5 6144 4850 2212 82 17 0 chrX 21504578 21504871 -141095059 + AluSp SINE Alu 1 298 -15 3434 204 33 18 chrX 21504871 21505192 -141094738 - L1ME1 LINE L1 -1299 4850 4535 2151 204 121 31 chrX 21505192 21505736 -141094194 - MLT1E LTR MaLR 0 593 1 1744 213 52 2 chrX 21505736 21506163 -141093767 - L1ME1 LINE L1 -1590 4539 4092 2095 114 7 0 chrX 21506171 21506469 -141093461 - AluSx SINE Alu -11 301 2 2292 91 3 0 chrX 21506536 21506844 -141093086 - AluSp SINE Alu -3 310 2 246 32 0 0 chrX 21506846 21506877 -141093053 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2119 95 0 3 chrX 21506878 21507162 -141092768 - AluSq SINE Alu -30 283 1 323 207 26 69 chrX 21507195 21507311 -141092619 - L1ME1 LINE L1 -4730 1580 1470 651 235 68 51 chrX 21507338 21507457 -141092473 - L1ME1 LINE L1 -4862 1257 1142 1866 130 33 3 chrX 21507457 21507757 -141092173 - AluJb SINE Alu -3 309 1 651 235 68 51 chrX 21507757 21508016 -141091914 - L1ME1 LINE L1 -4977 1142 939 1870 142 0 7 chrX 21508016 21508312 -141091618 - AluSx SINE Alu -18 294 1 303 312 129 53 chrX 21508315 21508726 -141091204 - L1ME1 LINE L1 -5269 850 472 1759 109 98 0 chrX 21508726 21509000 -141090930 - AluSx SINE Alu -11 301 1 303 312 129 53 chrX 21509000 21509287 -141090643 - L1ME1 LINE L1 -5647 472 82 1966 135 0 0 chrX 21509287 21509592 -141090338 + AluSx SINE Alu 3 307 0 303 312 129 53 chrX 21509592 21509680 -141090250 - L1ME1 LINE L1 -6037 82 2 340 318 139 20 chrX 21509682 21509833 -141090097 - L1ME4a LINE L1 -118 6072 5904 1270 219 148 23 chrX 21509841 21510225 -141089705 - LTR16A LTR ERVL 0 450 19 358 280 23 21 chrX 21510371 21510485 -141089445 - MLT1J LTR MaLR -301 210 110 233 250 21 0 chrX 21510442 21510490 -141089440 - LTR67 LTR ERVL -400 157 109 * 242 265 0 48 chrX 21510536 21510583 -141089347 - MLT1L LTR MaLR -536 79 36 2372 75 7 0 chrX 21510583 21510891 -141089039 + AluSp SINE Alu 1 310 -3 242 265 0 48 chrX 21510891 21510926 -141089004 - MLT1L LTR MaLR -579 36 1 1057 163 54 15 chrX 21511002 21511205 -141088725 - THE1C LTR MaLR 0 364 154 903 89 0 0 chrX 21511206 21511330 -141088600 + AluSc SINE Alu 173 296 -13 1158 108 13 0 chrX 21511332 21511489 -141088441 - THE1C LTR MaLR -213 162 4 11925 78 15 12 chrX 21511492 21511803 -141088127 - THE1B-int LTR MaLR 0 1580 1271 2168 87 3 7 chrX 21511803 21512102 -141087828 - AluSc SINE Alu -11 298 1 11925 78 15 12 chrX 21512102 21513365 -141086565 - THE1B-int LTR MaLR -309 1271 1 1930 145 73 20 chrX 21513365 21513709 -141086221 - THE1B LTR MaLR 0 364 3 615 282 110 9 chrX 21513710 21514029 -141085901 - L1ME4a LINE L1 -368 5822 5472 1888 125 43 0 chrX 21514234 21514515 -141085415 - AluSg SINE Alu -17 293 1 342 279 151 48 chrX 21515265 21515537 -141084393 - L1ME4a LINE L1 -3989 2407 2108 2361 57 7 3 chrX 21515581 21515877 -141084053 - AluY SINE Alu -14 297 1 451 160 140 113 chrX 21515904 21516054 -141083876 + L1MC4 LINE L1 6767 7010 -1032 2122 116 0 3 chrX 21516057 21516368 -141083562 + AluSx SINE Alu 1 310 -2 2935 94 32 5 chrX 21516554 21516988 -141082942 - L1MA4A LINE L1 -6 6297 5852 310 143 0 0 chrX 21517205 21517254 -141082676 - AluJo SINE Alu -2 300 252 1090 160 0 5 chrX 21517258 21517445 -141082485 - AluJo SINE Alu -126 186 1 231 204 0 0 chrX 21517516 21517565 -141082365 + (TA)n Simple_repeat Simple_repeat 1 49 0 282 214 71 0 chrX 21517565 21517649 -141082281 + L1MC4 LINE L1 6614 6703 -1339 226 261 0 22 chrX 21517615 21517707 -141082223 - L1MC4 LINE L1 -1339 6703 6614 * 2337 65 0 13 chrX 21517740 21518046 -141081884 - AluY SINE Alu -9 302 1 590 220 148 94 chrX 21518072 21518248 -141081682 + MIR SINE MIR 10 175 -87 2244 40 0 53 chrX 21518248 21518550 -141081380 + AluY SINE Alu 1 286 -25 198 0 0 0 chrX 21518557 21518579 -141081351 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 590 220 148 94 chrX 21518579 21518617 -141081313 + MIR SINE MIR 180 244 -18 338 287 43 0 chrX 21518642 21518757 -141081173 - HAL1b LINE L1 -819 529 410 449 194 112 0 chrX 21518774 21518872 -141081058 + MIR SINE MIR 5 113 -149 384 270 127 67 chrX 21519041 21519308 -141080622 + MLT1K LTR MaLR 185 467 -121 292 302 10 0 chrX 21519326 21519422 -141080508 + MIR SINE MIR 159 255 -7 2065 108 3 3 chrX 21519481 21519788 -141080142 + AluSx SINE Alu 1 307 -5 282 239 0 30 chrX 21519821 21519888 -141080042 - HAL1b LINE L1 -1062 286 222 199 235 39 0 chrX 21519994 21520045 -141079885 + L2 LINE L2 2094 2146 -1168 390 271 167 21 chrX 21520332 21520476 -141079454 + MER5A DNA MER1_type 25 189 0 2248 85 0 0 chrX 21520536 21520829 -141079101 - AluSx SINE Alu -19 293 1 2273 74 7 0 chrX 21520948 21521247 -141078683 - AluY SINE Alu -10 301 1 348 200 71 12 chrX 21521713 21521798 -141078132 - MIR SINE MIR -56 206 117 941 355 42 46 chrX 21521961 21522109 -141077821 + L2 LINE L2 2208 2355 -959 2113 96 56 88 chrX 21522109 21522485 -141077445 - THE1B LTR MaLR 0 364 1 941 355 42 46 chrX 21522485 21522819 -141077111 + L2 LINE L2 2355 2689 -625 1506 171 3 11 chrX 21522819 21523106 -141076824 + AluJb SINE Alu 1 285 -27 941 355 42 46 chrX 21523106 21523117 -141076813 + L2 LINE L2 2689 2699 -615 2080 62 29 7 chrX 21523117 21523428 -141076502 + AluSx SINE Alu 1 317 0 941 355 42 46 chrX 21523428 21523643 -141076287 + L2 LINE L2 2699 2916 -398 1758 123 14 11 chrX 21523644 21523929 -141076001 - AluSg SINE Alu -24 286 1 2074 127 0 13 chrX 21524488 21524804 -141075126 + AluSx SINE Alu 1 312 0 356 239 36 90 chrX 21524825 21524917 -141075013 + L1ME4a LINE L1 5745 5840 -281 2237 85 7 0 chrX 21524917 21525211 -141074719 + AluSx SINE Alu 7 302 -10 450 29 44 0 chrX 21525211 21525279 -141074651 + (TA)n Simple_repeat Simple_repeat 2 72 0 356 239 36 90 chrX 21525279 21525352 -141074578 + L1ME4a LINE L1 5838 5902 -219 676 183 75 116 chrX 21525375 21525643 -141074287 - L1M4b LINE L1 -5394 1465 1209 696 289 43 67 chrX 21525702 21526093 -141073837 - L1M4b LINE L1 -5676 1179 798 692 278 39 50 chrX 21526142 21526423 -141073507 - L1M4b LINE L1 -6581 278 1 1983 104 55 0 chrX 21526455 21526744 -141073186 + AluSq SINE Alu 1 305 -8 623 134 185 0 chrX 21526904 21527023 -141072907 - FRAM SINE Alu -5 171 31 496 221 83 7 chrX 21527128 21527273 -141072657 + MER103 DNA DNA 10 165 -1 221 320 92 111 chrX 21527563 21527869 -141072061 - L2 LINE L2 -20 3252 2953 1971 81 0 8 chrX 21528046 21528307 -141071623 + AluSx SINE Alu 46 304 -8 1060 157 0 0 chrX 21528309 21528481 -141071449 + AluSg/x SINE Alu 136 307 -5 603 168 68 43 chrX 21528481 21528642 -141071288 - L1MC5 LINE L1 -789 7172 7008 335 194 0 0 chrX 21528743 21528810 -141071120 - MIR SINE MIR -93 115 49 2427 70 0 0 chrX 21530999 21531299 -141068631 - AluSq SINE Alu -13 300 1 806 182 0 89 chrX 21531552 21531755 -141068175 + FRAM SINE Alu 1 176 0 2221 89 0 7 chrX 21531760 21532064 -141067866 + AluSg SINE Alu 1 302 -8 220 272 100 61 chrX 21532337 21532517 -141067413 + L2 LINE L2 3030 3216 -97 519 224 6 58 chrX 21532640 21532814 -141067116 - AluSq SINE Alu -146 167 3 638 134 104 55 chrX 21532850 21533014 -141066916 - Charlie4 DNA MER1_type -1 1960 1789 266 288 0 0 chrX 21533070 21533129 -141066801 + polypurine Low_complexity Low_complexity 3 61 0 26 0 0 0 chrX 21533728 21533754 -141066176 + AT_rich Low_complexity Low_complexity 1 26 0 1951 118 0 23 chrX 21533929 21534235 -141065695 - AluJb SINE Alu -13 299 1 1543 95 0 0 chrX 21535152 21535362 -141064568 + AluSq SINE Alu 54 263 -50 299 113 16 0 chrX 21535362 21535424 -141064506 + (TA)n Simple_repeat Simple_repeat 2 64 0 823 137 0 0 chrX 21535426 21535543 -141064387 - FLAM_C SINE Alu -26 117 1 1009 150 75 0 chrX 21535959 21536146 -141063784 - MER20 DNA MER1_type -1 218 18 26 30 0 0 chrX 21537520 21537553 -141062377 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chrX 21537837 21537875 -141062055 + AT_rich Low_complexity Low_complexity 1 38 0 2040 122 0 13 chrX 21538127 21538438 -141061492 + AluSq SINE Alu 3 309 -4 306 289 0 21 chrX 21538530 21538649 -141061281 - AluY SINE Alu 0 301 207 37 17 7 0 chrX 21538664 21538748 -141061182 + GC_rich Low_complexity Low_complexity 1 39 0 201 346 0 0 chrX 21538828 21538880 -141061050 + C-rich Low_complexity Low_complexity 4 55 0 198 206 0 0 chrX 21538966 21539034 -141060896 + C-rich Low_complexity Low_complexity 1 68 0 202 386 15 23 chrX 21539061 21539193 -141060737 + C-rich Low_complexity Low_complexity 6 136 0 46 86 0 0 chrX 21541386 21541502 -141058428 + GC_rich Low_complexity Low_complexity 1 116 0 231 196 22 0 chrX 21541720 21541766 -141058164 + G-rich Low_complexity Low_complexity 1 47 0 27 49 0 0 chrX 21541774 21541815 -141058115 + GC_rich Low_complexity Low_complexity 1 41 0 26 64 0 0 chrX 21542997 21543044 -141056886 + AT_rich Low_complexity Low_complexity 1 47 0 980 154 23 0 chrX 21543462 21543637 -141056293 - AluJb SINE Alu 0 312 134 1919 87 42 7 chrX 21543638 21543967 -141055963 - AluSx SINE Alu 0 312 1 1465 112 5 9 chrX 21544331 21544546 -141055384 + AluSx SINE Alu 1 214 -98 1522 172 20 26 chrX 21544904 21545206 -141054724 + AluJo SINE Alu 1 300 -12 319 300 88 31 chrX 21545224 21545384 -141054546 - MLT1J LTR MaLR -342 169 1 989 305 41 71 chrX 21545396 21545984 -141053946 + L1M4 LINE L1 3097 3666 -2480 1758 150 7 10 chrX 21545984 21546314 -141053616 + AluJb SINE Alu 1 312 0 989 305 41 71 chrX 21546314 21546357 -141053573 + L1M4 LINE L1 3666 3709 -2437 1964 171 102 37 chrX 21546357 21546386 -141053544 + LOR1b LTR ERV1 1 27 -434 2017 105 0 32 chrX 21546386 21546701 -141053229 - AluSx SINE Alu -7 305 1 1964 171 102 37 chrX 21546701 21547104 -141052826 + LOR1b LTR ERV1 27 461 0 1888 123 29 13 chrX 21547104 21547413 -141052517 + LOR1b-int LTR ERV1 1 314 -7806 2095 115 0 0 chrX 21547413 21547717 -141052213 + AluSx SINE Alu 1 304 -8 3107 99 24 14 chrX 21547727 21548565 -141051365 + LOR1b-int LTR ERV1 1032 1920 -6200 2263 64 4 0 chrX 21548584 21548888 -141051042 + AluY SINE Alu 1 305 0 2152 83 0 29 chrX 21548888 21549202 -141050728 + AluSx SINE Alu 8 312 0 1885 143 3 3 chrX 21549204 21549504 -141050426 + AluJb SINE Alu 1 300 -12 714 153 8 17 chrX 21549534 21549652 -141050278 + FLAM_A SINE Alu 5 121 -12 624 118 93 124 chrX 21549652 21549738 -141050192 + L1MB2 LINE L1 6016 6096 -75 2130 100 23 0 chrX 21549738 21550039 -141049891 + AluSg SINE Alu 1 308 -2 624 118 93 124 chrX 21550039 21550113 -141049817 + L1MB2 LINE L1 6096 6171 0 320 167 0 0 chrX 21551550 21551598 -141048332 - FAM SINE Alu -51 124 77 203 353 35 12 chrX 21551599 21551684 -141048246 - MIR SINE MIR -158 104 18 401 340 109 0 chrX 21552085 21552241 -141047689 - L2 LINE L2 -1 3271 3099 2083 93 7 27 chrX 21552285 21552585 -141047345 + AluSg SINE Alu 1 294 -16 354 213 150 8 chrX 21552668 21552795 -141047135 - L1MC5 LINE L1 -134 7827 7683 383 307 103 60 chrX 21552936 21553231 -141046699 - L2 LINE L2 -426 2888 2580 1868 120 34 3 chrX 21553231 21553523 -141046407 - AluSq SINE Alu -12 301 1 3439 141 36 21 chrX 21553551 21554162 -141045768 - L1MB5 LINE L1 -8 6166 5547 1860 98 24 0 chrX 21554175 21554429 -141045501 - AluSx SINE Alu -52 260 1 341 263 18 0 chrX 21554455 21554569 -141045361 - L1M4 LINE L1 -2658 3488 3373 879 119 21 14 chrX 21554571 21554714 -141045216 + BC200 scRNA scRNA 1 144 -56 755 246 165 23 chrX 21554724 21555119 -141044811 - L1M4 LINE L1 -2781 3365 2915 342 294 49 34 chrX 21555201 21555405 -141044525 - L1MA8 LINE L1 -191 6100 5894 274 278 46 40 chrX 21555291 21555442 -141044488 - L1MD2 LINE L1 -355 6004 5853 * 1977 189 52 55 chrX 21555425 21555706 -141044224 - L1M4 LINE L1 -3227 2919 2639 2328 179 64 27 chrX 21555706 21556192 -141043738 - MLT1D LTR MaLR -1 504 1 1977 189 52 55 chrX 21556192 21556219 -141043711 - L1M4 LINE L1 -3507 2639 2613 756 175 0 16 chrX 21556219 21556345 -141043585 + FLAM_A SINE Alu 1 124 -9 1977 189 52 55 chrX 21556345 21556617 -141043313 - L1M4 LINE L1 -3533 2613 2340 25 0 0 0 chrX 21557130 21557155 -141042775 + AT_rich Low_complexity Low_complexity 1 25 0 1896 121 3 44 chrX 21557155 21557452 -141042478 - AluSq SINE Alu -28 285 1 373 168 95 0 chrX 21557452 21557547 -141042383 + MIR SINE MIR 99 202 -60 622 94 0 0 chrX 21557631 21557716 -141042214 - AluJ/FLAM SINE Alu -224 88 4 2138 86 25 0 chrX 21557774 21558053 -141041877 - AluSp SINE Alu -17 296 11 2233 97 3 7 chrX 21558060 21558359 -141041571 - AluSx SINE Alu -14 298 1 2384 71 0 0 chrX 21558404 21558717 -141041213 - AluY SINE Alu 0 313 1 287 277 0 0 chrX 21558741 21558806 -141041124 + MIR SINE MIR 45 109 -153 1926 110 7 55 chrX 21558806 21559116 -141040814 - AluSx SINE Alu -3 309 15 2209 68 0 34 chrX 21559232 21559526 -141040404 + AluY SINE Alu 2 285 -26 6380 91 3 1 chrX 21559626 21560498 -141039432 - L1PA11 LINE L1 0 6174 5301 1862 106 34 27 chrX 21560563 21560856 -141039074 + AluSx SINE Alu 1 295 -17 2008 127 33 10 chrX 21561035 21561334 -141038596 - AluSx SINE Alu -6 306 1 603 208 0 0 chrX 21561382 21561512 -141038418 + L1MB7 LINE L1 6039 6168 -16 1973 132 10 7 chrX 21561519 21561823 -141038107 + AluSg SINE Alu 1 305 -5 461 106 0 0 chrX 21561835 21561901 -141038029 + Alu SINE Alu 234 299 -13 5420 126 51 124 chrX 21561943 21563579 -141036351 - pTR5 LTR ERV1 0 2438 743 1534 150 39 4 chrX 21563579 21563833 -141036097 + AluJo SINE Alu 31 293 -19 1072 75 0 0 chrX 21563868 21564001 -141035929 + AluSp SINE Alu 1 133 -180 22 56 0 0 chrX 21564421 21564457 -141035473 + GC_rich Low_complexity Low_complexity 1 36 0 1756 160 4 4 chrX 21566598 21566879 -141033051 + AluJb SINE Alu 1 281 -31 225 0 0 0 chrX 21567046 21567071 -141032859 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2292 79 0 0 chrX 21567073 21567350 -141032580 - AluSc SINE Alu -32 277 1 937 142 196 78 chrX 21568254 21568550 -141031380 + MER96B DNA MER1_type? 1 331 -86 1139 156 93 113 chrX 21569366 21569719 -141030211 - LTR40c LTR ERVL -119 346 1 586 287 53 27 chrX 21569866 21570085 -141029845 - HERVL LTR ERVL -1831 3654 3421 868 199 82 6 chrX 21570112 21570283 -141029647 - LTR33 LTR ERVL -337 184 1 1298 199 24 120 chrX 21570285 21570448 -141029482 - MER20B DNA MER1_type -343 440 332 436 136 8 168 chrX 21570448 21570573 -141029357 + U6 snRNA snRNA 2 106 -1 1298 199 24 120 chrX 21570573 21570785 -141029145 - MER20B DNA MER1_type -451 332 101 2390 90 0 0 chrX 21570952 21571252 -141028678 + AluSx SINE Alu 1 300 -12 998 193 74 0 chrX 21571409 21571585 -141028345 + MLT1D LTR MaLR 1 189 -316 1742 151 41 24 chrX 21571587 21571879 -141028051 + AluJb SINE Alu 1 297 -15 754 251 4 87 chrX 21571994 21572108 -141027822 - L1MC4 LINE L1 -1143 6899 6777 248 91 23 0 chrX 21572108 21572152 -141027778 + (TTG)n Simple_repeat Simple_repeat 1 45 0 2064 81 4 0 chrX 21572152 21572411 -141027519 - AluSp SINE Alu -53 260 1 754 251 4 87 chrX 21572411 21572526 -141027404 - L1MC4 LINE L1 -1263 6779 6688 1849 202 117 44 chrX 21572527 21573032 -141026898 + MLT1E LTR MaLR 1 542 -51 2078 121 24 0 chrX 21573046 21573344 -141026586 - AluSx SINE Alu -7 305 1 890 128 8 0 chrX 21573346 21573471 -141026459 - AluJb SINE Alu -186 126 1 390 219 0 38 chrX 21573587 21573692 -141026238 - AluYb8 SINE Alu -1 307 207 * 599 184 0 0 chrX 21573686 21573784 -141026146 - MLT1D LTR MaLR -316 189 92 1070 122 7 0 chrX 21573786 21573934 -141025996 - AluSg/x SINE Alu -69 243 95 968 99 8 0 chrX 21574577 21574731 -141025199 + AluY SINE Alu 151 305 0 727 101 0 0 chrX 21574771 21574870 -141025060 + LOR1-int LTR ERV1 2363 2461 -5659 1943 124 25 4 chrX 21574871 21575146 -141024784 + AluSx SINE Alu 1 281 -31 186 71 0 0 chrX 21575146 21575174 -141024756 + (CTAA)n Simple_repeat Simple_repeat 1 28 0 763 90 0 131 chrX 21575188 21575333 -141024597 + FLAM_C SINE Alu 1 126 -7 390 305 94 10 chrX 21575399 21575762 -141024168 + L1ME LINE L1 5197 5586 -535 1215 165 55 15 chrX 21575932 21576243 -141023687 - MLT2B2 LTR ERVL 0 515 138 2219 102 0 10 chrX 21576243 21576538 -141023392 - AluSx SINE Alu -20 292 1 2038 97 47 53 chrX 21576558 21576782 -141023148 + MER46B DNA MER2_type 1 99 -2632 2208 94 7 26 chrX 21576782 21577090 -141022840 - AluSx SINE Alu -10 302 1 2038 97 47 53 chrX 21577090 21577226 -141022704 + MER46B DNA MER2_type 99 234 -2 22 35 0 0 chrX 21577624 21577653 -141022277 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chrX 21577744 21577803 -141022127 + AT_rich Low_complexity Low_complexity 1 59 0 1470 186 3 50 chrX 21577999 21578300 -141021630 - AluJb SINE Alu -25 287 1 2166 117 3 0 chrX 21578495 21578785 -141021145 - AluSx SINE Alu -21 291 1 825 195 0 30 chrX 21578820 21578984 -141020946 + FRAM SINE Alu 1 159 -7 1644 148 22 57 chrX 21579368 21579685 -141020245 + AluJo SINE Alu 1 306 -6 605 236 21 31 chrX 21580163 21580354 -141019576 + L1MC5 LINE L1 6990 7178 -783 1728 106 0 4 chrX 21580354 21580580 -141019350 - AluSp SINE Alu -86 227 3 5764 189 37 15 chrX 21580583 21581786 -141018144 + L1MB8 LINE L1 4094 5352 -826 2350 104 0 0 chrX 21581786 21582083 -141017847 + AluSx SINE Alu 1 297 -15 5764 189 37 15 chrX 21582083 21582573 -141017357 + L1MB8 LINE L1 5352 5830 -348 1213 153 45 33 chrX 21582573 21582815 -141017115 + MLT1C LTR MaLR 1 245 -222 2345 61 7 20 chrX 21582818 21583114 -141016816 + AluY SINE Alu 1 292 -19 273 167 19 0 chrX 21583918 21583972 -141015958 - L2 LINE L2 -4 3309 3255 1740 133 5 93 chrX 21584813 21584938 -141014992 + L1MB8 LINE L1 4964 5098 -1048 2340 92 0 3 chrX 21584938 21585241 -141014689 - AluSg SINE Alu -8 302 1 1740 133 5 93 chrX 21585241 21585514 -141014416 + L1MB8 LINE L1 5098 5327 -819 754 179 0 30 chrX 21585516 21585650 -141014280 + AluJo SINE Alu 6 135 -177 2042 153 0 28 chrX 21585674 21585995 -141013935 + AluJb SINE Alu 1 312 0 1220 186 23 5 chrX 21586008 21586229 -141013701 + AluJo SINE Alu 84 308 -4 666 155 0 17 chrX 21586230 21586346 -141013584 + L1MB8 LINE L1 5320 5433 -733 724 147 8 39 chrX 21586353 21586482 -141013448 + AluJo/FLAM SINE Alu 6 130 -182 2310 70 0 20 chrX 21586482 21586806 -141013124 + AluY SINE Alu 1 311 0 2926 173 47 70 chrX 21586807 21586863 -141013067 + L1MB8 LINE L1 5451 5507 -671 1974 128 20 23 chrX 21586863 21587168 -141012762 + AluSx SINE Alu 1 304 -8 2926 173 47 70 chrX 21587168 21587275 -141012655 + L1MB8 LINE L1 5507 5615 -563 2294 103 0 0 chrX 21587275 21587575 -141012355 - AluSx SINE Alu -12 300 1 2926 173 47 70 chrX 21587575 21588098 -141011832 + L1MB8 LINE L1 5615 6122 -56 2178 123 0 0 chrX 21588098 21588400 -141011530 - AluSx SINE Alu -10 302 1 2926 173 47 70 chrX 21588400 21588456 -141011474 + L1MB8 LINE L1 6122 6178 0 689 201 39 7 chrX 21588468 21588622 -141011308 + MIR SINE MIR 45 203 -59 21 36 0 0 chrX 21588648 21588676 -141011254 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chrX 21588751 21588777 -141011153 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2169 78 3 11 chrX 21588783 21589067 -141010863 - AluSx SINE Alu -30 282 1 1985 133 3 3 chrX 21589089 21589382 -141010548 - AluJo SINE Alu -19 293 1 385 117 17 0 chrX 21589386 21589446 -141010484 - Alu SINE Alu -3 299 239 2297 96 7 0 chrX 21589585 21589878 -141010052 + AluSp SINE Alu 1 295 -18 1881 97 43 53 chrX 21590206 21590344 -141009586 + AluSg SINE Alu 1 139 -171 2518 50 0 10 chrX 21590344 21590642 -141009288 + AluY SINE Alu 2 296 -15 1881 97 43 53 chrX 21590642 21590802 -141009128 + AluSg SINE Alu 139 296 -14 236 284 59 0 chrX 21590832 21590934 -141008996 + L1M4 LINE L1 3601 3708 -2438 1582 157 51 14 chrX 21590995 21591289 -141008641 + AluJo SINE Alu 8 312 0 521 286 43 47 chrX 21591315 21591413 -141008517 + L1M4 LINE L1 3902 3999 -2147 1527 104 0 48 chrX 21591413 21591644 -141008286 + AluSg/x SINE Alu 85 304 -8 521 286 43 47 chrX 21591644 21591867 -141008063 + L1M4 LINE L1 3999 4222 -1924 223 48 24 24 chrX 21591895 21591937 -141007993 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 436 85 0 0 chrX 21591945 21592004 -141007926 - Alu SINE Alu -258 60 2 1420 183 106 35 chrX 21592025 21592218 -141007712 - HsTC2 DNA Tc2 -2 1896 1718 1970 101 4 4 chrX 21592218 21592485 -141007445 + AluSx SINE Alu 1 267 -45 1420 183 106 35 chrX 21592485 21592696 -141007234 - HsTC2 DNA Tc2 -180 1718 1287 236 213 21 0 chrX 21592687 21592734 -141007196 - HsTC2 DNA Tc2 -1360 538 491 * 917 222 30 15 chrX 21592735 21592933 -141006997 - HsTC2 DNA Tc2 -1696 202 2 958 74 0 0 chrX 21593433 21593554 -141006376 + AluSg/x SINE Alu 177 297 -15 2496 65 0 0 chrX 21593558 21593867 -141006063 + AluY SINE Alu 2 310 -1 250 178 0 0 chrX 21593877 21593922 -141006008 - L1MD1 LINE L1 -24 6218 6174 1182 120 223 21 chrX 21593922 21594197 -141005733 + MER1B DNA MER1_type 1 338 -1 1871 153 84 12 chrX 21594198 21594531 -141005399 - L1MD1 LINE L1 -61 6181 5825 1282 177 0 9 chrX 21594537 21594763 -141005167 - AluJb SINE Alu -6 306 83 3249 177 101 74 chrX 21594768 21596088 -141003842 - L1MD1 LINE L1 -528 5714 4479 2447 87 0 10 chrX 21596088 21596400 -141003530 - AluSc SINE Alu 0 309 1 3249 177 101 74 chrX 21596400 21596515 -141003415 - L1MD1 LINE L1 -1763 4479 4369 1259 216 3 26 chrX 21596537 21596843 -141003087 - AluSq SINE Alu 0 303 5 1377 119 3 126 chrX 21597398 21597524 -141002406 - AluYb8 SINE Alu -67 251 178 207 0 0 0 chrX 21597524 21597547 -141002383 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1377 119 3 126 chrX 21597547 21597706 -141002224 - AluYb8 SINE Alu -140 178 1 815 165 0 0 chrX 21597709 21597842 -141002088 - FLAM_C SINE Alu 0 133 1 234 184 20 0 chrX 21597842 21597891 -141002039 + MER96B DNA MER1_type? 328 377 -40 573 277 73 0 chrX 21597918 21598055 -141001875 - MER58B DNA MER1_type -2 339 193 2244 114 3 3 chrX 21598232 21598539 -141001391 - AluSq SINE Alu -6 307 1 2242 84 49 0 chrX 21599503 21599790 -141000140 + AluSp SINE Alu 6 306 -7 2300 99 0 3 chrX 21599792 21600094 -140999836 + AluSx SINE Alu 1 301 -11 2218 93 0 27 chrX 21600094 21600393 -140999537 + AluSx SINE Alu 1 292 -20 437 127 2 213 chrX 21600921 21601097 -140998833 - L1MB4 LINE L1 -9 6171 6021 580 173 10 0 chrX 21601205 21601309 -140998621 + AluSg/x SINE Alu 189 293 -16 2113 107 11 4 chrX 21601870 21602180 -140997750 + AluSx SINE Alu 1 312 0 21 0 0 0 chrX 21602244 21602265 -140997665 + AT_rich Low_complexity Low_complexity 1 21 0 1609 133 24 16 chrX 21602420 21602669 -140997261 + AluSq SINE Alu 1 251 -62 2491 149 33 57 chrX 21602700 21602945 -140996985 + L1MA4 LINE L1 5543 5772 -528 2164 107 33 3 chrX 21602945 21603245 -140996685 + AluSx SINE Alu 1 309 -3 2491 149 33 57 chrX 21603245 21603490 -140996440 + L1MA4 LINE L1 5772 6021 -279 1532 167 18 29 chrX 21604150 21604426 -140995504 - AluJo SINE Alu -39 273 1 2256 100 0 3 chrX 21604922 21605213 -140994717 - AluSq SINE Alu -23 290 1 2325 93 0 0 chrX 21605539 21605830 -140994100 + AluSg SINE Alu 2 292 -18 405 77 0 0 chrX 21605830 21605882 -140994048 + THE1B LTR MaLR 313 364 0 1425 173 91 43 chrX 21605882 21606211 -140993719 - MLT1D LTR MaLR -155 350 6 239 149 64 0 chrX 21606216 21606278 -140993652 + L1MC3 LINE L1 5954 6019 -328 632 199 39 125 chrX 21606282 21606430 -140993500 + L1MC3 LINE L1 6068 6227 -1558 2634 91 25 39 chrX 21606430 21606528 -140993402 + L1MA8 LINE L1 5852 5950 -341 2441 76 6 13 chrX 21606528 21606843 -140993087 + AluSp SINE Alu 1 313 0 2634 91 25 39 chrX 21606843 21607185 -140992745 + L1MA8 LINE L1 5950 6286 -5 632 199 39 125 chrX 21607185 21607319 -140992611 + L1MC3 LINE L1 6227 6323 -1462 2305 104 7 0 chrX 21607319 21607626 -140992304 + AluSx SINE Alu 1 309 -3 632 199 39 125 chrX 21607626 21607653 -140992277 + L1MC3 LINE L1 6323 6351 -1434 2092 154 24 62 chrX 21607659 21608082 -140991848 - LTR54 LTR ERV1 -2 508 102 1099 97 7 0 chrX 21608084 21608257 -140991673 - AluSg/x SINE Alu 0 309 136 2631 85 14 6 chrX 21608436 21608801 -140991129 + L1PA11 LINE L1 5807 6174 0 2453 68 0 0 chrX 21609135 21609428 -140990502 - AluSg SINE Alu -17 293 1 2212 108 3 0 chrX 21609566 21609861 -140990069 - AluSp SINE Alu -17 296 1 269 101 0 0 chrX 21609863 21609909 -140990021 + L1MB7 LINE L1 6125 6172 -9 231 236 101 0 chrX 21609907 21609996 -140989934 + L1MC4 LINE L1 6605 6702 -1340 * 411 267 0 0 chrX 21609996 21610086 -140989844 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 759 228 0 0 chrX 21610086 21610266 -140989664 + (TA)n Simple_repeat Simple_repeat 1 180 0 573 275 0 0 chrX 21610235 21610413 -140989517 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 698 226 11 0 chrX 21610415 21610592 -140989338 + (CATA)n Simple_repeat Simple_repeat 2 180 0 2056 101 0 0 chrX 21610599 21610875 -140989055 - AluSg1 SINE Alu -33 276 1 430 287 8 58 chrX 21610998 21611256 -140988674 - AluY SINE Alu -8 293 49 2178 113 3 3 chrX 21611962 21612264 -140987666 + AluSc SINE Alu 1 302 -7 2209 94 0 26 chrX 21612425 21612732 -140987198 - AluSq SINE Alu -14 299 1 210 162 0 0 chrX 21613388 21613425 -140986505 + A-rich Low_complexity Low_complexity 1 37 0 243 0 0 0 chrX 21613522 21613549 -140986381 + (T)n Simple_repeat Simple_repeat 1 27 0 904 187 4 128 chrX 21613558 21613703 -140986227 + AluJo SINE Alu 1 104 -208 2311 101 16 0 chrX 21613703 21614010 -140985920 + AluSx SINE Alu 1 312 0 904 187 4 128 chrX 21614010 21614115 -140985815 + AluJo SINE Alu 104 220 -92 367 209 35 23 chrX 21614115 21614201 -140985729 + AluJo SINE Alu 86 172 -130 2170 149 0 0 chrX 21614286 21614594 -140985336 - AluSx SINE Alu -4 308 1 294 240 0 27 chrX 21614615 21614690 -140985240 - L1MC5 LINE L1 -73 7888 7816 1618 135 12 8 chrX 21614822 21615074 -140984856 - AluSx SINE Alu -59 253 1 2177 101 0 23 chrX 21615457 21615763 -140984167 - AluSx SINE Alu -13 299 1 1851 162 7 3 chrX 21615865 21616168 -140983762 - AluJb SINE Alu -8 304 1 462 103 0 0 chrX 21616280 21616348 -140983582 - AluS SINE Alu -244 69 2 2560 35 0 3 chrX 21616995 21617285 -140982645 + AluY SINE Alu 1 289 -22 3283 233 130 40 chrX 21617406 21618436 -140981494 - L1MC4 LINE L1 -6 8036 6875 2258 115 3 6 chrX 21618436 21618749 -140981181 - AluSx SINE Alu 0 312 1 3283 233 130 40 chrX 21618749 21618952 -140980978 - L1MC4 LINE L1 -1167 6875 6692 1340 170 132 0 chrX 21619324 21619589 -140980341 - AluJo SINE Alu -2 300 1 2131 123 7 7 chrX 21619837 21620147 -140979783 + AluSx SINE Alu 3 312 0 191 36 36 0 chrX 21620658 21620686 -140979244 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2000 76 49 4 chrX 21620687 21620951 -140978979 - AluSx SINE Alu -36 276 1 2199 120 0 0 chrX 21621612 21621911 -140978019 - AluSx SINE Alu -13 299 1 360 289 56 56 chrX 21621953 21622095 -140977835 - MER5B DNA MER1_type 0 178 37 2428 78 0 0 chrX 21622706 21623000 -140976930 + AluSg SINE Alu 1 294 -16 2130 108 11 0 chrX 21623010 21623297 -140976633 + AluSx SINE Alu 1 290 -22 1478 194 60 0 chrX 21623309 21623561 -140976369 + Tigger7 DNA MER2_type 1 267 -2220 577 194 0 0 chrX 21623559 21623657 -140976273 + Tigger7 DNA MER2_type 2394 2491 0 * 755 171 67 57 chrX 21623660 21623746 -140976184 + L1MB7 LINE L1 5472 5556 -610 2131 124 0 0 chrX 21623746 21624053 -140975877 + AluSx SINE Alu 1 307 0 755 171 67 57 chrX 21624053 21624158 -140975772 + L1MB7 LINE L1 5556 5666 -500 2384 111 0 0 chrX 21624159 21624466 -140975464 + AluSx SINE Alu 1 307 -5 198 0 0 0 chrX 21624590 21624612 -140975318 + (CA)n Simple_repeat Simple_repeat 2 23 0 1744 156 63 3 chrX 21624816 21625149 -140974781 + L1MB7 LINE L1 5832 6184 0 275 328 115 8 chrX 21625228 21625463 -140974467 + L1M4 LINE L1 4007 4266 -1880 291 73 0 0 chrX 21625591 21625632 -140974298 - AluSp/q SINE Alu -6 297 257 516 144 18 9 chrX 21625744 21625858 -140974072 + L1MDa LINE L1 1295 1444 -4938 180 0 0 0 chrX 21625880 21625900 -140974030 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 2006 136 0 0 chrX 21625904 21626184 -140973746 - AluSx SINE Alu -31 281 2 6601 102 33 55 chrX 21626186 21626287 -140973643 - Tigger1 DNA MER2_type -941 1477 1375 1837 171 0 0 chrX 21626287 21626579 -140973351 + AluJo SINE Alu 1 292 -20 6601 102 33 55 chrX 21626579 21626660 -140973270 - Tigger1 DNA MER2_type -1043 1375 1294 2391 85 0 0 chrX 21626660 21626955 -140972975 - AluSx SINE Alu -17 295 1 6601 102 33 55 chrX 21626955 21627123 -140972807 - Tigger1 DNA MER2_type -1124 1294 1124 1604 192 14 7 chrX 21627123 21627410 -140972520 - AluJo SINE Alu -23 289 1 6601 102 33 55 chrX 21627410 21628140 -140971790 - Tigger1 DNA MER2_type -1294 1124 418 327 200 22 72 chrX 21628260 21628440 -140971490 + (CCCCG)n Simple_repeat Simple_repeat 4 174 0 2272 70 0 48 chrX 21628601 21628917 -140971013 + AluY SINE Alu 1 301 -10 843 165 0 67 chrX 21628997 21629161 -140970769 + FRAM SINE Alu 1 153 -13 363 273 131 17 chrX 21629319 21629495 -140970435 + L2 LINE L2 1996 2191 -1123 1784 83 0 0 chrX 21629709 21629938 -140969992 - AluSg/x SINE Alu -7 302 74 1183 167 33 49 chrX 21630067 21630372 -140969558 - AluSx SINE Alu -2 300 1 228 257 14 27 chrX 21630688 21630762 -140969168 + GA-rich Low_complexity Low_complexity 5 77 0 182 179 26 26 chrX 21630914 21630992 -140968938 + GA-rich Low_complexity Low_complexity 4 81 0 2428 83 3 0 chrX 21631351 21631651 -140968279 + AluSp SINE Alu 1 301 -12 1660 180 31 14 chrX 21631887 21632176 -140967754 + AluJb SINE Alu 1 294 -18 505 118 12 24 chrX 21632787 21632872 -140967058 + AluSp/q SINE Alu 215 298 -15 737 240 69 0 chrX 21632885 21633060 -140966870 + L2 LINE L2 2506 2692 -622 2330 105 0 0 chrX 21633462 21633758 -140966172 + AluSx SINE Alu 1 296 -16 2073 124 21 3 chrX 21633769 21634059 -140965871 + AluSx SINE Alu 1 295 -17 1617 172 19 70 chrX 21635114 21635323 -140964607 + L1M4 LINE L1 4615 4833 -1313 2393 61 0 0 chrX 21635323 21635601 -140964329 - AluY SINE Alu -31 280 3 1617 172 19 70 chrX 21635601 21635616 -140964314 + L1M4 LINE L1 4833 4847 -1299 2410 25 14 4 chrX 21635616 21635927 -140964003 - AluY SINE Alu 0 314 1 1617 172 19 70 chrX 21635927 21636073 -140963857 + L1M4 LINE L1 4847 4968 -1178 872 148 0 0 chrX 21636073 21636201 -140963729 + AluSq/x SINE Alu 1 128 -184 2287 67 0 7 chrX 21636591 21636873 -140963057 - AluY SINE Alu -12 299 20 327 208 58 142 chrX 21636893 21636921 -140963009 - L1M4 LINE L1 -2918 3228 3199 932 202 180 28 chrX 21636921 21637238 -140962692 + MLT1A1 LTR MaLR 1 365 0 327 208 58 142 chrX 21637238 21637405 -140962525 - L1M4 LINE L1 -2947 3199 3060 1905 141 0 4 chrX 21637405 21637681 -140962249 - AluJb SINE Alu -37 275 1 327 208 58 142 chrX 21637681 21637758 -140962172 - L1M4 LINE L1 -3086 3060 2978 686 177 0 70 chrX 21637777 21637840 -140962090 - L1ME2 LINE L1 -9 6155 6089 2281 103 3 10 chrX 21637840 21638152 -140961778 - AluSg SINE Alu 0 310 1 686 177 0 70 chrX 21638152 21638246 -140961684 - L1ME2 LINE L1 -75 6089 6009 288 175 0 0 chrX 21638325 21638388 -140961542 + C-rich Low_complexity Low_complexity 1 63 0 1158 54 7 7 chrX 21638728 21638876 -140961054 + AluY SINE Alu 148 295 -16 760 179 22 107 chrX 21638896 21639214 -140960716 + L1M4 LINE L1 2971 3261 -2885 2178 96 3 10 chrX 21639221 21639523 -140960407 + AluY SINE Alu 1 300 -11 1025 147 25 0 chrX 21639534 21639691 -140960239 + FRAM SINE Alu 1 161 -15 490 249 46 15 chrX 21639697 21639894 -140960036 + L1M4 LINE L1 3257 3459 -2687 2295 164 57 5 chrX 21639902 21640304 -140959626 + Tigger1 DNA MER2_type 6 428 -1990 307 143 48 0 chrX 21640426 21640489 -140959441 - AluSc SINE Alu -5 294 229 1683 159 11 7 chrX 21640516 21640799 -140959131 - AluSg SINE Alu -26 284 1 486 169 0 0 chrX 21640843 21640920 -140959010 - AluJ/FLAM SINE Alu -234 78 2 1595 202 67 63 chrX 21640920 21641366 -140958564 - L1M4 LINE L1 -1189 4957 4510 936 82 16 0 chrX 21641366 21641488 -140958442 - AluSq/x SINE Alu -189 124 1 1131 75 7 0 chrX 21641622 21641769 -140958161 + AluY SINE Alu 156 303 -8 694 226 39 0 chrX 21641770 21641925 -140958005 - L1MC3 LINE L1 -1926 5859 5699 2180 132 3 0 chrX 21641925 21642228 -140957702 + AluSx SINE Alu 1 304 -8 2238 95 30 10 chrX 21642236 21642532 -140957398 + AluSx SINE Alu 1 302 -10 1345 173 31 17 chrX 21642535 21642824 -140957106 + AluJb SINE Alu 5 297 -15 285 266 81 0 chrX 21642861 21642985 -140956945 + L1ME LINE L1 5583 5716 -405 623 141 0 0 chrX 21643002 21643094 -140956836 - AluJ/FLAM SINE Alu -210 102 11 2488 93 0 0 chrX 21643434 21643746 -140956184 + AluSx SINE Alu 1 312 0 22 0 0 0 chrX 21643749 21643771 -140956159 + AT_rich Low_complexity Low_complexity 1 22 0 2113 131 3 16 chrX 21644093 21644406 -140955524 + AluJo SINE Alu 1 309 -3 1530 162 3 52 chrX 21644421 21644730 -140955200 + AluJb SINE Alu 9 302 -10 1949 145 13 10 chrX 21645018 21645322 -140954608 - AluJb SINE Alu -7 305 1 691 200 36 0 chrX 21645360 21645500 -140954430 - L1MB8 LINE L1 -6 6172 6028 268 266 13 0 chrX 21645645 21645724 -140954206 - L1MB8 LINE L1 -174 6010 5931 795 211 12 12 chrX 21645724 21645890 -140954040 - AluSg/x SINE Alu -8 304 139 486 328 49 16 chrX 21646317 21646622 -140953308 + L1M4 LINE L1 3136 3450 -2696 1937 112 31 0 chrX 21646772 21647032 -140952898 - AluSx SINE Alu -44 268 1 284 236 9 47 chrX 21647041 21647147 -140952783 + L1MC5 LINE L1 7077 7178 -783 1712 105 0 4 chrX 21647147 21647375 -140952555 - AluSx SINE Alu -85 227 1 710 159 0 29 chrX 21647376 21647514 -140952416 + L1MB8 LINE L1 6045 6178 0 1604 164 4 7 chrX 21647521 21647802 -140952128 + AluJo SINE Alu 1 280 -32 669 58 0 0 chrX 21647802 21647888 -140952042 + (GA)n Simple_repeat Simple_repeat 1 86 0 572 171 9 9 chrX 21648539 21648644 -140951286 - FLAM_A SINE Alu -36 106 2 2096 90 0 75 chrX 21648759 21649080 -140950850 + AluSc SINE Alu 2 298 -11 5031 137 52 20 chrX 21649086 21650021 -140949909 + L1MC2 LINE L1 5197 6163 -181 2431 81 3 0 chrX 21650026 21650336 -140949594 + AluY SINE Alu 1 311 0 2956 155 29 48 chrX 21650501 21650718 -140949212 + L1MB8 LINE L1 5477 5697 -481 2415 86 0 3 chrX 21650718 21651031 -140948899 + AluSq SINE Alu 1 312 -1 2956 155 29 48 chrX 21651031 21651400 -140948530 + L1MB8 LINE L1 5697 6052 -126 2148 124 3 13 chrX 21651402 21651709 -140948221 - AluSq SINE Alu -9 304 1 2069 95 14 3 chrX 21651710 21652006 -140947924 - L1MC1 LINE L1 -9 6324 6026 288 196 22 11 chrX 21652008 21652100 -140947830 - L1MDb LINE L1 -5204 879 787 872 190 0 17 chrX 21652107 21652286 -140947644 + AluJb SINE Alu 136 311 -1 910 251 27 120 chrX 21652306 21653188 -140946742 - L1MDb LINE L1 -5286 784 3 2111 88 46 56 chrX 21653203 21653386 -140946544 - AluSx SINE Alu -9 303 123 2345 97 3 10 chrX 21653386 21653697 -140946233 - AluSg SINE Alu -1 309 1 2111 88 46 56 chrX 21653697 21653819 -140946111 - AluSx SINE Alu -189 123 1 433 320 33 12 chrX 21653821 21654065 -140945865 - L1MEc LINE L1 -4683 1713 1465 2521 73 0 0 chrX 21654089 21654390 -140945540 - AluY SINE Alu -10 301 1 28 29 0 0 chrX 21655095 21655130 -140944800 + AT_rich Low_complexity Low_complexity 1 35 0 1288 109 35 0 chrX 21655130 21655332 -140944598 - L1MA8 LINE L1 -3 6288 6080 556 262 35 7 chrX 21655824 21655969 -140943961 + MIR SINE MIR 36 184 -78 311 315 34 14 chrX 21656552 21656698 -140943232 + MIR SINE MIR 95 243 -19 2276 107 0 3 chrX 21656744 21657042 -140942888 - AluSx SINE Alu -15 297 1 1618 157 63 18 chrX 21657663 21657949 -140941981 + AluJb SINE Alu 1 299 -13 2555 156 65 2 chrX 21658145 21658625 -140941305 + L1MB7 LINE L1 5658 6167 -17 2344 125 37 12 chrX 21658836 21659245 -140940685 - L1MB3 LINE L1 -1 6182 5764 2710 147 147 24 chrX 21659335 21659783 -140940147 + MER6A DNA MER2_type 2 528 -337 2101 122 0 7 chrX 21659783 21660086 -140939844 - AluSx SINE Alu -11 301 1 2710 147 147 24 chrX 21660086 21660173 -140939757 + MER6A DNA MER2_type 528 603 -2 1990 133 18 0 chrX 21660242 21660528 -140939402 - AluSx SINE Alu -21 291 1 2655 17 3 0 chrX 21661148 21661439 -140938491 + AluY SINE Alu 14 305 -6 2438 79 3 0 chrX 21661451 21661754 -140938176 + AluSq SINE Alu 1 304 -9 2066 117 0 0 chrX 21661844 21662117 -140937813 + AluSg SINE Alu 1 273 -37 26 0 0 0 chrX 21662128 21662154 -140937776 + AT_rich Low_complexity Low_complexity 1 26 0 444 313 12 12 chrX 21662164 21662330 -140937600 + AluSq SINE Alu 3 168 -145 2727 141 1 7 chrX 21662899 21662997 -140936933 + L1PA4 LINE L1 5393 5490 -665 2400 84 0 10 chrX 21662997 21663308 -140936622 + AluSc SINE Alu 1 308 -1 2727 141 1 7 chrX 21663308 21663708 -140936222 + L1PA4 LINE L1 5490 5887 -268 2129 135 0 6 chrX 21664734 21665046 -140934884 + AluSx SINE Alu 1 310 -2 2408 77 3 7 chrX 21665202 21665499 -140934431 - AluSc SINE Alu -13 296 1 756 238 16 16 chrX 21665506 21665699 -140934231 - AluJo SINE Alu 0 312 120 485 169 0 0 chrX 21665832 21665915 -140934015 + AluS SINE Alu 222 304 -6 2164 81 3 7 chrX 21666016 21666325 -140933605 - AluSx SINE Alu 0 308 1 358 211 0 0 chrX 21666338 21666409 -140933521 + L1MC/D LINE L1 5647 5717 -2278 23 78 0 0 chrX 21666409 21666460 -140933470 + AT_rich Low_complexity Low_complexity 1 51 0 2143 87 0 14 chrX 21666465 21666740 -140933190 - AluSx SINE Alu -41 271 1 1789 163 14 7 chrX 21667805 21668099 -140931831 + AluSx SINE Alu 1 296 -16 2378 86 0 6 chrX 21668099 21668412 -140931518 + AluY SINE Alu 1 311 0 2477 56 3 23 chrX 21668459 21668763 -140931167 + AluY SINE Alu 1 298 -13 215 231 0 19 chrX 21669313 21669365 -140930565 - MIR SINE MIR -141 121 71 22 0 0 0 chrX 21669432 21669454 -140930476 + AT_rich Low_complexity Low_complexity 1 22 0 2207 111 0 7 chrX 21669457 21669764 -140930166 + AluY SINE Alu 1 305 -6 2155 106 13 7 chrX 21669956 21670259 -140929671 + AluSx SINE Alu 1 305 -7 2463 77 3 0 chrX 21670351 21670649 -140929281 + AluSp SINE Alu 1 299 -14 2271 108 0 3 chrX 21670811 21671116 -140928814 + AluSx SINE Alu 1 304 -8 584 216 27 40 chrX 21671151 21671299 -140928631 + MIR SINE MIR 71 216 -46 209 231 99 33 chrX 21671307 21671398 -140928532 - MIR SINE MIR -95 167 71 1934 128 3 7 chrX 21671661 21671949 -140927981 - AluSp SINE Alu -26 287 1 468 190 5 138 chrX 21671965 21672160 -140927770 + L1MC5 LINE L1 6818 6986 -975 315 263 0 13 chrX 21672181 21672257 -140927673 + L1M4 LINE L1 -302 4294967068 -6774 585 174 0 43 chrX 21672258 21672373 -140927557 - AluJb SINE Alu 0 312 203 1866 275 51 21 chrX 21672387 21672951 -140926979 + L1M4 LINE L1 -175 405 -6141 2137 119 0 0 chrX 21672956 21673234 -140926696 + AluSx SINE Alu 1 278 -34 225 0 0 0 chrX 21673237 21673262 -140926668 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1849 191 70 34 chrX 21673263 21673760 -140926170 + L1M4 LINE L1 730 1244 -5302 1957 144 0 7 chrX 21673760 21674051 -140925879 + AluSx SINE Alu 1 289 -23 293 111 37 0 chrX 21674675 21674729 -140925201 + GA-rich Low_complexity Low_complexity 3 58 0 652 221 32 29 chrX 21674729 21674955 -140924975 + L1M4 LINE L1 1393 2025 -4540 354 169 28 0 chrX 21674923 21675008 -140924922 + L1M4 LINE L1 4951 5037 -1607 * 676 215 151 16 chrX 21675011 21675197 -140924733 + MIR SINE MIR 23 233 -29 339 252 80 40 chrX 21675197 21675348 -140924582 - HAL1b LINE L1 -819 529 410 408 194 112 0 chrX 21675365 21675463 -140924467 + MIR SINE MIR 5 113 -149 359 251 131 71 chrX 21675632 21675899 -140924031 + MLT1K LTR MaLR 185 467 -121 256 302 10 0 chrX 21675917 21676013 -140923917 + MIR SINE MIR 159 255 -7 2156 111 3 3 chrX 21676072 21676379 -140923551 + AluSx SINE Alu 1 307 -5 286 239 0 30 chrX 21676412 21676479 -140923451 - HAL1b LINE L1 -1062 286 222 182 235 39 0 chrX 21676585 21676636 -140923294 + L2 LINE L2 2094 2146 -1168 293 263 188 23 chrX 21676927 21677060 -140922870 + MER5A DNA MER1_type 29 183 -6 29 28 0 0 chrX 21677234 21677270 -140922660 + AT_rich Low_complexity Low_complexity 1 36 0 994 214 134 17 chrX 21677841 21678131 -140921799 + MER5C DNA MER1_type 1 324 0 319 294 46 51 chrX 21678132 21678329 -140921601 + L1M4b LINE L1 3275 3470 -3174 964 196 6 0 chrX 21678332 21678505 -140921425 + AluJb SINE Alu 137 310 -2 2341 91 3 0 chrX 21678627 21678924 -140921006 - AluSx SINE Alu -14 298 1 248 275 22 44 chrX 21678950 21679041 -140920889 - MLT1J LTR MaLR -41 470 382 1636 172 13 20 chrX 21679178 21679480 -140920450 + AluJb SINE Alu 1 300 -12 317 300 88 31 chrX 21679498 21679658 -140920272 - MLT1J LTR MaLR -342 169 1 663 314 41 71 chrX 21679670 21680258 -140919672 + L1M4b LINE L1 3595 4164 -2480 1875 150 7 10 chrX 21680258 21680591 -140919339 + AluJb SINE Alu 1 312 0 663 314 41 71 chrX 21680591 21680635 -140919295 + L1M4b LINE L1 4164 4208 -2436 2140 95 0 41 chrX 21680663 21680978 -140918952 - AluSx SINE Alu -10 302 1 180 0 0 0 chrX 21680986 21681006 -140918924 + (T)n Simple_repeat Simple_repeat 1 20 0 2037 161 119 5 chrX 21681006 21681384 -140918546 + LOR1b LTR ERV1 41 461 0 1873 123 29 13 chrX 21681384 21681693 -140918237 + LOR1b-int LTR ERV1 1 314 -7806 2219 115 0 0 chrX 21681693 21681997 -140917933 + AluSx SINE Alu 1 304 -8 2126 156 177 16 chrX 21681998 21682485 -140917445 + LTR57-int LTR ERVL 1032 1596 -3747 * 3175 99 36 4 chrX 21682348 21682844 -140917086 + LOR1b-int LTR ERV1 1409 1920 -6200 2407 64 4 0 chrX 21682863 21683167 -140916763 + AluY SINE Alu 1 305 0 727 101 0 0 chrX 21683207 21683306 -140916624 + LOR1b-int LTR ERV1 2363 2461 -5659 1943 124 25 4 chrX 21683307 21683582 -140916348 + AluSx SINE Alu 1 281 -31 186 71 0 0 chrX 21683582 21683610 -140916320 + (CTAA)n Simple_repeat Simple_repeat 1 28 0 763 90 0 131 chrX 21683624 21683769 -140916161 + FLAM_C SINE Alu 1 126 -7 390 305 94 10 chrX 21683835 21684198 -140915732 + L1ME LINE L1 5197 5586 -535 1215 165 55 15 chrX 21684368 21684679 -140915251 - MLT2B2 LTR ERVL 0 515 138 2220 106 0 7 chrX 21684679 21684971 -140914959 - AluSg SINE Alu -20 290 1 2540 178 90 135 chrX 21684971 21685109 -140914821 - L1MC5 LINE L1 -251 7710 7567 1602 133 75 11 chrX 21685109 21685430 -140914500 - AluJb SINE Alu 0 312 6 2540 178 90 135 chrX 21685430 21685464 -140914466 - L1MC5 LINE L1 -394 7567 7533 1943 148 10 0 chrX 21685464 21685755 -140914175 + AluJb SINE Alu 1 294 -18 2540 178 90 135 chrX 21685755 21686422 -140913508 - L1MC5 LINE L1 -428 7533 6930 435 179 0 62 chrX 21686422 21686534 -140913396 - L1MB8 LINE L1 -15 6163 6059 2540 178 90 135 chrX 21686534 21686809 -140913121 - L1MC5 LINE L1 -1031 6930 6644 891 126 0 15 chrX 21688499 21688634 -140911296 - FLAM_C SINE Alu 0 133 1 2137 65 4 8 chrX 21688723 21688984 -140910946 + AluSq SINE Alu 1 260 -53 27 103 0 0 chrX 21690222 21690319 -140909611 + GC_rich Low_complexity Low_complexity 1 97 0 223 154 15 46 chrX 21690323 21690388 -140909542 + (CGG)n Simple_repeat Simple_repeat 1 63 0 205 148 37 19 chrX 21691287 21691341 -140908589 + (CGG)n Simple_repeat Simple_repeat 2 56 0 499 149 0 11 chrX 21692612 21692706 -140907224 - FLAM_A SINE Alu -2 140 48 2312 95 10 0 chrX 21693092 21693386 -140906544 - AluSx SINE Alu -15 297 1 25 65 0 0 chrX 21695096 21695142 -140904788 + AT_rich Low_complexity Low_complexity 1 46 0 277 273 71 55 chrX 21695241 21695424 -140904506 - L1ME2 LINE L1 -134 6030 5845 1945 177 49 97 chrX 21695437 21695749 -140904181 + Charlie1b DNA MER1_type 1 277 -2484 2390 80 34 11 chrX 21695749 21696098 -140903832 + L1PA14 LINE L1 5803 6159 -2 1945 177 49 97 chrX 21696098 21696334 -140903596 + Charlie1b DNA MER1_type 277 523 0 738 260 118 52 chrX 21696352 21696843 -140903087 - L1ME2 LINE L1 -362 5802 5218 2007 120 0 7 chrX 21696843 21697150 -140902780 - AluSx SINE Alu 0 305 1 738 260 118 52 chrX 21697150 21697470 -140902460 - L1ME2 LINE L1 -946 5218 4920 340 300 139 21 chrX 21697526 21697614 -140902316 - L1ME2 LINE L1 -1308 4838 4762 2558 55 0 0 chrX 21697614 21697907 -140902023 - AluY SINE Alu -18 293 1 340 300 139 21 chrX 21697907 21698055 -140901875 - L1ME2 LINE L1 -1384 4762 4574 330 294 94 12 chrX 21698122 21698292 -140901638 - L1ME2 LINE L1 -1683 4463 4280 946 217 30 15 chrX 21698297 21698495 -140901435 + HsTC2 DNA Tc2 2 202 -1696 236 213 21 0 chrX 21698496 21698543 -140901387 + HsTC2 DNA Tc2 491 538 -1360 * 1420 183 106 35 chrX 21698534 21698745 -140901185 + HsTC2 DNA Tc2 1287 1481 -417 1970 101 4 4 chrX 21698745 21699012 -140900918 - AluSx SINE Alu -45 267 1 1420 183 106 35 chrX 21699012 21699205 -140900725 + HsTC2 DNA Tc2 1481 1896 -2 436 85 0 0 chrX 21699226 21699285 -140900645 + Alu SINE Alu 2 60 -258 223 48 24 24 chrX 21699293 21699335 -140900595 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 521 286 43 47 chrX 21699363 21699586 -140900344 - L1ME2 LINE L1 -1924 4222 3999 1534 99 0 52 chrX 21699586 21699818 -140900112 - AluSg/x SINE Alu -8 302 83 521 286 43 47 chrX 21699818 21699916 -140900014 - L1ME2 LINE L1 -2147 3999 3902 1582 157 51 14 chrX 21699942 21700236 -140899694 - AluJo SINE Alu 0 312 8 236 284 59 0 chrX 21700297 21700399 -140899531 - L1ME2 LINE L1 -2438 3708 3601 2154 92 7 30 chrX 21700429 21700732 -140899198 - AluSq SINE Alu -14 299 4 27 62 0 0 chrX 21701162 21701210 -140898720 + AT_rich Low_complexity Low_complexity 1 48 0 2361 97 0 0 chrX 21701252 21701552 -140898378 - AluSx SINE Alu -12 300 1 1698 109 27 0 chrX 21701559 21701815 -140898115 - L1MA5 LINE L1 -30 6270 6008 1545 208 78 69 chrX 21702006 21702560 -140897370 + L1M4 LINE L1 4312 4870 -1276 2040 133 6 25 chrX 21702636 21702953 -140896977 - AluSx SINE Alu -1 311 1 1333 100 0 17 chrX 21703016 21703196 -140896734 + AluSp SINE Alu 121 297 -16 268 328 115 8 chrX 21703324 21703559 -140896371 - L1M4 LINE L1 -1880 4266 4007 1744 156 63 3 chrX 21703638 21703971 -140895959 - L1MB7 LINE L1 0 6184 5832 180 0 0 0 chrX 21704174 21704194 -140895736 + (TG)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chrX 21704212 21704234 -140895696 + (T)n Simple_repeat Simple_repeat 1 22 0 2541 83 0 0 chrX 21704319 21704631 -140895299 - AluSx SINE Alu 0 312 1 757 183 7 14 chrX 21704631 21704773 -140895157 - AluJo SINE Alu -169 143 3 231 36 0 0 chrX 21704785 21704813 -140895117 + (A)n Simple_repeat Simple_repeat 1 28 0 210 162 0 0 chrX 21704910 21704947 -140894983 + T-rich Low_complexity Low_complexity 1 37 0 2194 98 0 26 chrX 21705603 21705910 -140894020 + AluSq SINE Alu 1 299 -14 2264 103 3 3 chrX 21706071 21706372 -140893558 - AluSc SINE Alu -8 301 1 532 277 108 40 chrX 21708350 21708849 -140891081 + HAL1 LINE L1 816 1348 -1159 26 0 0 0 chrX 21709485 21709511 -140890419 + AT_rich Low_complexity Low_complexity 1 26 0 258 105 0 0 chrX 21709606 21709644 -140890286 + (T)n Simple_repeat Simple_repeat 1 38 0 208 384 23 0 chrX 21710293 21710379 -140889551 - L2 LINE L2 -545 2769 2682 2327 100 0 3 chrX 21711110 21711410 -140888520 - AluSx SINE Alu -13 299 1 2170 118 0 9 chrX 21711550 21711865 -140888065 - AluSx SINE Alu 0 312 1 254 332 121 11 chrX 21712355 21712545 -140887385 - L2 LINE L2 -432 2882 2672 390 42 0 0 chrX 21712848 21712896 -140887034 + (GA)n Simple_repeat Simple_repeat 2 49 0 372 242 58 76 chrX 21713261 21713444 -140886486 + L1ME3 LINE L1 5977 6164 0 1643 148 16 49 chrX 21714545 21714849 -140885081 - AluJb SINE Alu -18 294 1 2206 125 0 6 chrX 21714882 21715194 -140884736 + AluSx SINE Alu 1 310 -2 2441 68 3 7 chrX 21715350 21715646 -140884284 - AluSc SINE Alu -14 295 1 1709 172 44 0 chrX 21715657 21715954 -140883976 - AluJo SINE Alu -2 310 1 235 243 83 35 chrX 21716223 21716337 -140883593 + MIR SINE MIR 50 167 -71 628 216 27 40 chrX 21716345 21716493 -140883437 - MIR SINE MIR -46 216 71 2242 109 0 3 chrX 21716528 21716832 -140883098 - AluSx SINE Alu -9 303 1 2444 77 3 0 chrX 21716994 21717292 -140882638 - AluSp SINE Alu -14 299 1 2304 96 10 3 chrX 21717384 21717686 -140882244 - AluSx SINE Alu -8 304 1 2191 111 0 7 chrX 21717878 21718185 -140881745 - AluY SINE Alu -6 305 1 22 0 0 0 chrX 21718188 21718210 -140881720 + AT_rich Low_complexity Low_complexity 1 22 0 243 226 0 19 chrX 21718277 21718330 -140881600 + MIR SINE MIR 71 122 -140 2434 59 3 23 chrX 21718879 21719183 -140880747 - AluY SINE Alu -13 298 1 2407 83 0 3 chrX 21719230 21719542 -140880388 - AluY SINE Alu 0 311 1 1729 161 20 7 chrX 21719542 21719834 -140880096 - AluSx SINE Alu -16 296 1 2349 81 0 13 chrX 21720899 21721197 -140878733 + AluSx SINE Alu 1 294 -18 1961 143 0 3 chrX 21721337 21721630 -140878300 - AluSx SINE Alu -14 298 7 274 287 29 73 chrX 21722191 21722327 -140877603 - L2 LINE L2 -5 3267 3138 484 278 70 48 chrX 21722540 21722810 -140877120 - L1ME LINE L1 -436 5685 5410 247 322 151 47 chrX 21722852 21724134 -140875796 - L2 LINE L2 -673 2641 1226 2238 81 0 7 chrX 21724134 21724440 -140875490 - AluSx SINE Alu 0 304 1 2155 97 47 53 chrX 21724460 21724684 -140875246 + MER46B DNA MER2_type 1 99 -2632 2061 82 6 91 chrX 21724684 21725014 -140874916 - AluSx SINE Alu -10 302 1 2155 97 47 53 chrX 21725014 21725150 -140874780 + MER46B DNA MER2_type 99 234 -2 22 35 0 0 chrX 21725548 21725577 -140874353 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chrX 21725668 21725727 -140874203 + AT_rich Low_complexity Low_complexity 1 59 0 1429 187 3 50 chrX 21725919 21726218 -140873712 - AluJb SINE Alu -27 285 1 2166 114 3 0 chrX 21726413 21726703 -140873227 - AluSx SINE Alu -21 291 1 886 195 0 30 chrX 21726738 21726902 -140873028 + FRAM SINE Alu 1 159 -7 1595 155 22 57 chrX 21727285 21727602 -140872328 + AluJo SINE Alu 1 306 -6 259 298 69 30 chrX 21727757 21727888 -140872042 + L2 LINE L2 3178 3313 0 313 91 0 318 chrX 21728048 21728158 -140871772 - FAM SINE Alu -51 124 77 198 353 35 12 chrX 21728159 21728244 -140871686 - MIR SINE MIR -158 104 18 396 333 109 0 chrX 21728645 21728801 -140871129 - L2 LINE L2 -1 3271 3099 2227 87 7 27 chrX 21728845 21729145 -140870785 + AluSg SINE Alu 1 294 -16 377 213 150 8 chrX 21729228 21729355 -140870575 - L1MC5 LINE L1 -134 7827 7683 415 314 110 71 chrX 21729492 21729797 -140870133 - L2 LINE L2 -422 2892 2562 2383 82 0 0 chrX 21729797 21730090 -140869840 - AluY SINE Alu -18 293 1 415 314 110 71 chrX 21730090 21730237 -140869693 - L2 LINE L2 -752 2562 2422 28 29 0 0 chrX 21731006 21731041 -140868889 + AT_rich Low_complexity Low_complexity 1 35 0 1333 109 35 0 chrX 21731041 21731243 -140868687 - L1MA8 LINE L1 -3 6288 6080 589 269 35 7 chrX 21731735 21731880 -140868050 + MIR SINE MIR 36 184 -78 349 315 34 14 chrX 21732463 21732609 -140867321 + MIR SINE MIR 95 243 -19 2221 114 0 3 chrX 21732655 21732953 -140866977 - AluSx SINE Alu -15 297 1 1601 157 63 18 chrX 21733578 21733864 -140866066 + AluJb SINE Alu 1 299 -13 2697 156 65 2 chrX 21734060 21734540 -140865390 + L1MB7 LINE L1 5658 6167 -17 2460 119 37 15 chrX 21734751 21735161 -140864769 - L1MB3 LINE L1 -1 6182 5764 272 250 10 77 chrX 21735225 21735251 -140864679 - HAL1 LINE L1 -100 2407 2381 2953 142 147 26 chrX 21735251 21735700 -140864230 + MER6A DNA MER2_type 2 528 -337 2185 116 0 3 chrX 21735700 21736001 -140863929 - AluSx SINE Alu -12 300 1 2953 142 147 26 chrX 21736001 21736088 -140863842 + MER6A DNA MER2_type 528 603 -2 272 250 10 77 chrX 21736088 21736157 -140863773 - HAL1 LINE L1 -126 2381 2309 1718 107 48 55 chrX 21736157 21736309 -140863621 - AluSg SINE Alu -21 289 138 2507 50 0 10 chrX 21736309 21736607 -140863323 - AluY SINE Alu -15 296 2 1718 107 48 55 chrX 21736607 21736745 -140863185 - AluSg SINE Alu -172 138 1 272 250 10 77 chrX 21736745 21736844 -140863086 - HAL1 LINE L1 -198 2309 2225 231 227 98 104 chrX 21736935 21737073 -140862857 - HAL1b LINE L1 -437 911 773 2276 96 7 0 chrX 21737073 21737366 -140862564 - AluSp SINE Alu -18 295 1 231 227 98 104 chrX 21737366 21737390 -140862540 - HAL1b LINE L1 -575 773 750 401 221 79 0 chrX 21737410 21737537 -140862393 - HAL1 LINE L1 -343 2164 2028 1883 144 17 17 chrX 21737550 21737848 -140862082 - AluJo SINE Alu -14 298 1 673 158 238 12 chrX 21737920 21738084 -140861846 - MER3 DNA MER1_type -8 201 1 720 192 56 0 chrX 21738142 21738267 -140861663 + FLAM_C SINE Alu 2 133 -10 348 250 186 42 chrX 21738442 21738706 -140861224 + HAL1b LINE L1 49 350 -998 1132 248 29 32 chrX 21738713 21739024 -140860906 + HAL1b LINE L1 418 727 -621 313 228 159 53 chrX 21739038 21739152 -140860778 + HAL1b LINE L1 832 933 -415 1655 160 78 0 chrX 21739152 21739434 -140860496 - AluJo SINE Alu -8 304 1 313 228 159 53 chrX 21739434 21739508 -140860422 + HAL1b LINE L1 933 1040 -308 642 280 146 19 chrX 21739508 21739776 -140860154 - L2 LINE L2 -1 3312 3011 2158 222 238 42 chrX 21739779 21740214 -140859716 - L2 LINE L2 -978 2336 1988 1812 169 7 3 chrX 21740214 21740509 -140859421 - AluJo SINE Alu -16 296 1 2158 222 238 42 chrX 21740509 21740589 -140859341 - L2 LINE L2 -1326 1988 1925 2413 88 3 0 chrX 21740589 21740886 -140859044 + AluSq SINE Alu 1 298 -15 2158 222 238 42 chrX 21740886 21741473 -140858457 - L2 LINE L2 -1389 1925 1016 275 352 23 16 chrX 21741682 21741810 -140858120 + MIR SINE MIR 19 147 -115 283 366 159 8 chrX 21744031 21744282 -140855648 + L2 LINE L2 2363 2651 -663 195 317 96 19 chrX 21744433 21744537 -140855393 - MER5B DNA MER1_type -65 113 2 21 0 0 0 chrX 21745120 21745141 -140854789 + AT_rich Low_complexity Low_complexity 1 21 0 467 274 0 18 chrX 21745695 21745808 -140854122 + MIR SINE MIR 79 189 -73 2081 121 40 0 chrX 21746526 21746824 -140853106 + AluSx SINE Alu 1 310 -2 1517 151 107 4 chrX 21747319 21747454 -140852476 - AluJb SINE Alu -12 300 180 450 0 0 0 chrX 21747454 21747504 -140852426 + (TG)n Simple_repeat Simple_repeat 2 51 0 1517 151 107 4 chrX 21747504 21747640 -140852290 - AluJb SINE Alu -132 180 1 2318 62 10 14 chrX 21747907 21748199 -140851731 + AluY SINE Alu 2 292 -19 291 167 19 0 chrX 21749002 21749056 -140850874 - L2 LINE L2 -4 3309 3255 1817 158 0 24 chrX 21750536 21750834 -140849096 - AluSx SINE Alu -21 291 1 25 0 0 0 chrX 21752607 21752632 -140847298 + AT_rich Low_complexity Low_complexity 1 25 0 2136 98 3 41 chrX 21753838 21754156 -140845774 - AluSg1 SINE Alu -1 308 3 198 0 0 0 chrX 21754631 21754653 -140845277 + (T)n Simple_repeat Simple_repeat 1 22 0 980 166 37 32 chrX 21756309 21756496 -140843434 + MER5A DNA MER1_type 1 188 -1 189 0 0 0 chrX 21756798 21756819 -140843111 + (TG)n Simple_repeat Simple_repeat 2 22 0 318 269 107 31 chrX 21758428 21758652 -140841278 - L1ME LINE L1 -626 5609 5368 309 314 53 26 chrX 21758691 21758917 -140841013 - L1ME LINE L1 -924 5291 5060 1017 180 0 0 chrX 21758959 21759120 -140840810 + FRAM SINE Alu 1 153 -23 335 271 159 35 chrX 21759141 21759480 -140840450 - L1ME LINE L1 -1180 5035 4655 2234 98 3 0 chrX 21759483 21759780 -140840150 - AluSx SINE Alu -14 298 1 1700 87 61 32 chrX 21759963 21760240 -140839690 + AluSq SINE Alu 1 285 -28 416 236 11 0 chrX 21760425 21760514 -140839416 - MER5A DNA MER1_type -83 106 17 437 204 299 7 chrX 21760537 21760674 -140839256 + MER5B DNA MER1_type 1 177 -1 457 296 134 37 chrX 21760676 21760803 -140839127 - L1ME LINE L1 -2757 3458 3345 2343 96 0 0 chrX 21760803 21761104 -140838826 - AluSx SINE Alu -11 301 1 457 296 134 37 chrX 21761104 21761222 -140838708 - L1ME LINE L1 -2870 3345 3240 2161 134 0 6 chrX 21761222 21761536 -140838394 - AluJo SINE Alu 0 312 1 457 296 134 37 chrX 21761536 21761877 -140838053 - L1ME LINE L1 -2975 3240 2814 874 159 0 0 chrX 21762035 21762167 -140837763 - FLAM_C SINE Alu 0 133 2 470 315 102 35 chrX 21762575 21763026 -140836904 - HAL1 LINE L1 -827 1680 1200 195 129 0 0 chrX 21763169 21763200 -140836730 + (A)n Simple_repeat Simple_repeat 1 31 0 2820 118 11 122 chrX 21763530 21764063 -140835867 + MER101 LTR ERV1 1 474 0 499 287 32 103 chrX 21764082 21764403 -140835527 - L1ME LINE L1 -597 5573 5231 407 35 18 0 chrX 21764403 21764460 -140835470 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 636 121 222 0 chrX 21764460 21764559 -140835371 - FLAM_C SINE Alu -12 121 1 499 287 32 103 chrX 21764559 21764625 -140835305 - L1ME LINE L1 -938 5232 5163 1739 135 14 44 chrX 21764625 21764921 -140835009 - AluJb SINE Alu -25 287 1 499 287 32 103 chrX 21764921 21765376 -140834554 - L1ME LINE L1 -1007 5163 4780 2082 125 0 0 chrX 21765413 21765693 -140834237 - AluSx SINE Alu -32 280 1 3765 151 16 31 chrX 21765703 21765864 -140834066 - L1MB7 LINE L1 0 6184 6022 2216 115 3 3 chrX 21765864 21766176 -140833754 + AluSq SINE Alu 2 313 0 3765 151 16 31 chrX 21766176 21766685 -140833245 - L1MB7 LINE L1 -162 6022 5524 725 121 0 69 chrX 21766686 21766802 -140833128 + AluJb SINE Alu 190 297 -15 339 242 23 53 chrX 21766807 21766939 -140832991 - L1ME LINE L1 -4995 1210 1083 2019 201 60 9 chrX 21766996 21767448 -140832482 - L1ME1 LINE L1 -278 5888 5414 1547 239 43 10 chrX 21767504 21767897 -140832033 - L1ME1 LINE L1 -23 6143 5738 * 7637 83 7 29 chrX 21767885 21768223 -140831707 + L1MA1 LINE L1 5138 5482 -820 2468 70 3 0 chrX 21768223 21768524 -140831406 + AluSp SINE Alu 1 302 -11 7637 83 7 29 chrX 21768524 21769375 -140830555 + L1MA1 LINE L1 5482 6302 0 1573 209 163 3 chrX 21769411 21769673 -140830257 - L1ME1 LINE L1 -420 5746 5527 2002 121 16 22 chrX 21769673 21769987 -140829943 - AluJb SINE Alu 0 312 1 1573 209 163 3 chrX 21769987 21770200 -140829730 - L1ME1 LINE L1 -639 5527 5203 3657 223 66 38 chrX 21770219 21770472 -140829458 - L1ME LINE L1 -5302 1094 850 1892 149 10 23 chrX 21770472 21770774 -140829156 - AluJb SINE Alu -14 298 1 3657 223 66 38 chrX 21770774 21771575 -140828355 - L1ME LINE L1 -5546 850 10 2011 96 6 81 chrX 21771624 21771946 -140827984 - AluSx SINE Alu -14 298 1 243 0 0 0 chrX 21772274 21772301 -140827629 + (TG)n Simple_repeat Simple_repeat 2 28 0 704 269 14 0 chrX 21772511 21772734 -140827196 - HAL1b LINE L1 -520 828 603 483 271 157 8 chrX 21772728 21772983 -140826947 - HAL1 LINE L1 -604 1903 1611 * 364 289 96 60 chrX 21773077 21773389 -140826541 - HAL1 LINE L1 -1043 1464 1126 2160 119 3 3 chrX 21773389 21773683 -140826247 - AluSp SINE Alu -19 294 1 364 289 96 60 chrX 21773683 21773882 -140826048 - HAL1 LINE L1 -1381 1126 935 1571 123 123 15 chrX 21774247 21774508 -140825422 - AluJb SINE Alu -23 289 1 2276 112 3 0 chrX 21775095 21775389 -140824541 - AluSg SINE Alu -15 295 1 2139 120 94 26 chrX 21775603 21775944 -140823986 + THE1B LTR MaLR 1 364 0 633 235 59 12 chrX 21776100 21776270 -140823660 + MER5B DNA MER1_type 1 178 0 1780 166 3 0 chrX 21776821 21777105 -140822825 + AluJb SINE Alu 11 295 -17 2473 46 0 0 chrX 21777110 21777424 -140822506 + AluY SINE Alu 1 314 0 2108 109 6 26 chrX 21777430 21777742 -140822188 + AluSx SINE Alu 1 306 -6 2594 44 0 0 chrX 21777765 21778063 -140821867 - AluY SINE Alu -9 302 5 2073 125 0 26 chrX 21778343 21778655 -140821275 - AluJb SINE Alu -8 304 1 770 133 9 18 chrX 21779370 21779483 -140820447 - FLAM_C SINE Alu -15 128 17 307 304 61 75 chrX 21779579 21779793 -140820137 - HAL1 LINE L1 -1580 927 717 207 162 0 0 chrX 21779904 21779941 -140819989 + GA-rich Low_complexity Low_complexity 6 42 0 24 32 0 0 chrX 21780129 21780160 -140819770 + AT_rich Low_complexity Low_complexity 1 31 0 380 250 62 56 chrX 21780344 21780471 -140819459 + MER112 DNA MER1_type 8 133 -127 2108 107 7 29 chrX 21780471 21780780 -140819150 - AluSx SINE Alu -10 302 1 1788 142 17 37 chrX 21780783 21781079 -140818851 - AluJb SINE Alu -22 290 1 380 250 62 56 chrX 21781079 21781107 -140818823 + MER112 DNA MER1_type 134 168 -92 1690 155 31 36 chrX 21781124 21781639 -140818291 + L1MB4 LINE L1 5093 5609 -571 2265 87 7 3 chrX 21781639 21781925 -140818005 + AluSx SINE Alu 13 299 -13 1690 155 31 36 chrX 21781925 21782244 -140817686 + L1MB4 LINE L1 5609 6079 -101 2242 93 31 0 chrX 21782244 21782535 -140817395 - AluSx SINE Alu -9 303 4 1690 155 31 36 chrX 21782535 21782627 -140817303 + L1MB4 LINE L1 6079 6170 -10 921 118 17 17 chrX 21883411 21884372 -140715558 - HSATII Satellite Satellite -4 960 1 965 117 13 15 chrX 21884392 21885989 -140713941 - HSATII Satellite Satellite -8 1594 1 869 74 17 51 chrX 21886015 21886190 -140713740 - HSATII Satellite Satellite -1 169 1 959 108 14 8 chrX 21886216 21887290 -140712640 - HSATII Satellite Satellite 0 1079 1 916 138 11 13 chrX 21887320 21887771 -140712159 - HSATII Satellite Satellite -1 450 1 965 96 8 17 chrX 21887786 21888482 -140711448 - HSATII Satellite Satellite 0 689 1 784 125 18 18 chrX 21888509 21888677 -140711253 - HSATII Satellite Satellite -2 168 1 959 108 13 11 chrX 21888708 21889533 -140710397 - HSATII Satellite Satellite 0 826 1 965 115 13 14 chrX 21889564 21891457 -140708473 - HSATII Satellite Satellite -4 1891 1 1007 111 13 16 chrX 21891469 21892777 -140707153 - HSATII Satellite Satellite -8 1303 1 998 110 10 15 chrX 21892792 21894553 -140705377 - HSATII Satellite Satellite -8 1752 1 938 109 7 17 chrX 21894575 21895299 -140704631 - HSATII Satellite Satellite -50 717 1 944 101 14 11 chrX 21895318 21895854 -140704076 - HSATII Satellite Satellite 0 537 1 998 120 2 15 chrX 21895884 21896485 -140703445 - HSATII Satellite Satellite -9 593 1 965 123 14 0 chrX 21896508 21896804 -140703126 - HSATII Satellite Satellite -1 300 1 953 108 15 17 chrX 21896820 21898069 -140701861 - HSATII Satellite Satellite 0 1246 1 965 112 12 13 chrX 21898099 21899845 -140700085 - HSATII Satellite Satellite 0 1744 1 986 111 12 13 chrX 21899875 21901621 -140698309 - HSATII Satellite Satellite 0 1744 1 965 115 12 14 chrX 21901651 21904705 -140695225 - HSATII Satellite Satellite 0 3049 1 944 118 12 18 chrX 21904735 21906195 -140693735 - HSATII Satellite Satellite -4 1451 1 953 117 11 13 chrX 21906215 21906903 -140693027 - HSATII Satellite Satellite -3 686 1 944 111 13 15 chrX 21907024 21908355 -140691575 - HSATII Satellite Satellite 0 1327 1 986 116 12 19 chrX 21908385 21908986 -140690944 - HSATII Satellite Satellite -9 597 1 998 108 15 6 chrX 21909009 21910570 -140689360 - HSATII Satellite Satellite 0 1575 1 986 118 11 23 chrX 21910600 21911220 -140688710 - HSATII Satellite Satellite -9 612 1 947 108 16 5 chrX 21911231 21912346 -140687584 - HSATII Satellite Satellite 0 1126 1 965 115 11 17 chrX 21912376 21914304 -140685626 - HSATII Satellite Satellite -4 1917 1 986 113 14 13 chrX 21914324 21914778 -140685152 - HSATII Satellite Satellite -9 454 1 956 114 12 15 chrX 21914789 21915751 -140684179 - HSATII Satellite Satellite -2 958 1 980 115 7 14 chrX 21915778 21917301 -140682629 - HSATII Satellite Satellite 0 1511 1 920 99 7 0 chrX 21917327 21917478 -140682452 - HSATII Satellite Satellite 0 170 19 747 110 25 24 chrX 21917494 21917740 -140682190 - HSATII Satellite Satellite -9 246 1 947 111 12 10 chrX 21917766 21918988 -140680942 - HSATII Satellite Satellite -50 1224 1 998 106 13 9 chrX 21919000 21920740 -140679190 - HSATII Satellite Satellite 0 1748 1 974 121 11 19 chrX 21920770 21921371 -140678559 - HSATII Satellite Satellite -9 596 1 998 112 12 13 chrX 21921394 21925424 -140674506 - HSATII Satellite Satellite -9 4026 1 965 112 12 16 chrX 21925435 21927284 -140672646 - HSATII Satellite Satellite 0 1842 1 784 125 18 18 chrX 21927311 21927479 -140672451 - HSATII Satellite Satellite -2 168 1 1007 112 11 15 chrX 21927510 21933918 -140666012 - HSATII Satellite Satellite 0 6384 1 784 125 18 18 chrX 21933945 21934113 -140665817 - HSATII Satellite Satellite -2 168 1 986 110 10 13 chrX 21934144 21937695 -140662235 - HSATII Satellite Satellite 0 3538 1 998 112 8 14 chrX 21937710 21942360 -140657570 - HSATII Satellite Satellite -19 4624 1 339 191 52 27 chrX 21942537 21942832 -140657098 + (CTTAG)n Simple_repeat Simple_repeat 1 302 0 316 188 28 39 chrX 21942900 21943081 -140656849 + (CTTAG)n Simple_repeat Simple_repeat 2 180 0 386 161 37 0 chrX 22043100 22043181 -140556749 - L1M4 LINE L1 -506 5678 5595 2078 107 0 22 chrX 22043290 22043609 -140556321 + AluSx SINE Alu 1 312 0 1046 150 0 0 chrX 22043624 22043791 -140556139 + AluSg/x SINE Alu 121 287 -25 605 312 59 64 chrX 22043791 22044195 -140555735 - L2 LINE L2 -557 2757 2356 576 246 10 116 chrX 22044603 22044642 -140555288 + MER5B DNA MER1_type 1 43 -135 1884 138 0 0 chrX 22044642 22044917 -140555013 - AluSx SINE Alu -36 276 2 576 246 10 116 chrX 22044917 22045076 -140554854 + MER5B DNA MER1_type 43 178 0 241 318 0 0 chrX 22046113 22046179 -140553751 + CT-rich Low_complexity Low_complexity 4 69 0 187 297 208 0 chrX 22046930 22047031 -140552899 - L2 LINE L2 -3 3269 3148 738 238 60 24 chrX 22047045 22047293 -140552637 + MLT1C LTR MaLR 9 265 -202 490 146 214 58 chrX 22047427 22047530 -140552400 + MLT1C LTR MaLR 331 453 -52 2188 79 4 0 chrX 22047562 22047842 -140552088 - AluSx SINE Alu -30 282 2 424 76 30 15 chrX 22047844 22047910 -140552020 + MLT1C LTR MaLR 439 505 0 1855 149 10 0 chrX 22048264 22048552 -140551378 - AluJb SINE Alu -21 291 1 1596 186 34 56 chrX 22048561 22048766 -140551164 - L1MA10 LINE L1 -5 6329 6136 2069 113 0 0 chrX 22048766 22049049 -140550881 - AluSx SINE Alu -29 283 1 1596 186 34 56 chrX 22049049 22049251 -140550679 - L1MA10 LINE L1 -198 6136 5931 477 127 13 0 chrX 22049467 22049546 -140550384 - MADE1 DNA Mariner 0 80 1 432 272 43 37 chrX 22049804 22049966 -140549964 - MIR SINE MIR -40 222 60 3675 146 51 8 chrX 22049989 22050389 -140549541 - L1MB7 LINE L1 -25 6159 5721 1949 105 3 43 chrX 22050389 22050714 -140549216 - AluSx SINE Alu 0 312 1 3675 146 51 8 chrX 22050714 22050944 -140548986 - L1MB7 LINE L1 -463 5721 5502 308 330 52 9 chrX 22050991 22051106 -140548824 - L2 LINE L2 -15 3257 3138 1443 133 47 0 chrX 22051153 22051387 -140548543 + MER45B DNA AcHobo 796 1040 0 1725 181 15 12 chrX 22051902 22052227 -140547703 - L1PB4 LINE L1 -14 6142 5817 2357 73 106 3 chrX 22052360 22052690 -140547240 - THE1B LTR MaLR 0 364 1 2095 105 7 13 chrX 22053522 22053826 -140546104 - AluSq SINE Alu -11 302 1 1646 211 91 8 chrX 22053828 22054189 -140545741 - MSTD LTR MaLR -5 391 1 1638 179 53 0 chrX 22054189 22054491 -140545439 - L1MB2 LINE L1 -40 6131 5814 394 230 11 43 chrX 22055437 22055569 -140544361 + MER90 LTR ERV1 52 202 -412 733 289 33 30 chrX 22055603 22055907 -140544023 + MER90 LTR ERV1 291 595 -19 1775 121 42 3 chrX 22055970 22056259 -140543671 + AluSx SINE Alu 1 300 -12 1984 138 0 0 chrX 22056823 22057119 -140542811 - AluSx SINE Alu -16 296 1 633 136 57 102 chrX 22057207 22057384 -140542546 - MER96B DNA MER1_type? 0 417 249 297 122 61 0 chrX 22057395 22057444 -140542486 - MER96B DNA MER1_type? -365 52 1 1846 183 45 38 chrX 22057461 22057816 -140542114 + MER57A LTR ERV1 1 361 -42 1899 105 7 17 chrX 22057816 22058112 -140541818 - AluSg SINE Alu -17 293 1 1846 183 45 38 chrX 22058112 22058156 -140541774 + MER57A LTR ERV1 361 403 0 2143 88 17 0 chrX 22058765 22059059 -140540871 + AluSq SINE Alu 1 299 -14 210 189 0 0 chrX 22059469 22059506 -140540424 - MER5B DNA MER1_type -141 37 1 767 170 154 6 chrX 22059510 22059692 -140540238 + MER3 DNA MER1_type 1 209 0 319 287 171 16 chrX 22059701 22059830 -140540100 - MER5A DNA MER1_type -1 188 40 182 125 125 0 chrX 22059834 22059874 -140540056 + MER5A DNA MER1_type 31 75 -114 * 479 150 79 32 chrX 22059866 22059969 -140539961 - MER5A DNA MER1_type -77 112 4 2225 141 17 11 chrX 22060154 22060516 -140539414 - THE1B LTR MaLR 0 364 1 224 336 62 0 chrX 22061387 22061515 -140538415 + L2 LINE L2 2032 2167 -1147 1745 153 11 24 chrX 22061743 22062076 -140537854 + AluJb SINE Alu 1 329 0 1608 109 0 0 chrX 22062120 22062331 -140537599 + AluSg/x SINE Alu 83 293 -17 317 352 37 62 chrX 22062919 22063182 -140536748 - HAL1b LINE L1 -694 654 386 2340 102 0 0 chrX 22063182 22063476 -140536454 - AluSx SINE Alu -18 294 1 317 352 37 62 chrX 22063476 22063516 -140536414 - HAL1b LINE L1 -962 386 359 1762 182 0 3 chrX 22063516 22063818 -140536112 - AluJo SINE Alu -11 301 1 317 352 37 62 chrX 22063818 22063865 -140536065 - HAL1b LINE L1 -989 359 312 417 288 113 44 chrX 22063875 22064194 -140535736 - MLT1I LTR MaLR 0 409 69 1208 229 0 8 chrX 22064372 22064608 -140535322 + MER8 DNA MER2_type 3 236 -3 688 175 0 0 chrX 22064885 22064999 -140534931 - MER81 DNA DNA 0 114 1 1888 164 0 26 chrX 22065120 22065430 -140534500 - AluJb SINE Alu -10 302 1 613 211 163 24 chrX 22065841 22066007 -140533923 + LTR40a LTR ERVL 1 189 -330 957 148 12 30 chrX 22066015 22066184 -140533746 + FRAM SINE Alu 6 171 -5 2021 108 10 41 chrX 22066275 22066589 -140533341 - AluSx SINE Alu -8 304 1 1464 210 7 7 chrX 22066598 22066870 -140533060 + LTR40a LTR ERVL 248 519 0 3430 76 18 5 chrX 22067118 22067565 -140532365 + MLT2A2 LTR ERVL 1 453 0 694 232 61 6 chrX 22067682 22067863 -140532067 + MIR SINE MIR 12 202 -60 2055 178 45 53 chrX 22068044 22068128 -140531802 + Charlie4a DNA MER1_type 6 89 -1872 2293 80 3 38 chrX 22068128 22068441 -140531489 - AluSp SINE Alu -11 302 1 2055 178 45 53 chrX 22068441 22068793 -140531137 + Charlie4a DNA MER1_type 89 440 -1521 1708 143 29 48 chrX 22068793 22069108 -140530822 + AluJb SINE Alu 1 309 -3 2055 178 45 53 chrX 22069108 22069176 -140530754 + Charlie4a DNA MER1_type 440 507 -1 331 289 165 10 chrX 22069568 22069762 -140530168 + MIR SINE MIR 14 237 -25 492 202 83 0 chrX 22069915 22070024 -140529906 + MER110 LTR ERV1 369 486 -5 389 89 0 218 chrX 22070375 22070431 -140529499 - MADE1 DNA Mariner 0 80 14 2190 105 0 11 chrX 22070431 22070716 -140529214 + AluSq SINE Alu 1 282 -31 200 57 0 29 chrX 22070721 22070756 -140529174 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 389 89 0 218 chrX 22070756 22070794 -140529136 - MADE1 DNA Mariner -70 10 2 2261 182 57 16 chrX 22071637 22072125 -140527805 + L1MB5 LINE L1 5667 6174 0 1575 32 1 20 chrX 22072388 22072591 -140527339 + L1HS LINE L1 5957 6155 0 459 95 0 0 chrX 22072593 22072667 -140527263 + (A)n Simple_repeat Simple_repeat 1 74 0 1517 213 35 3 chrX 22073008 22073355 -140526575 + L1MB2 LINE L1 5812 6169 -2 21 71 0 0 chrX 22073376 22073418 -140526512 + AT_rich Low_complexity Low_complexity 1 42 0 417 131 0 0 chrX 22074650 22074734 -140525196 + (CAG)n Simple_repeat Simple_repeat 1 84 0 423 126 58 0 chrX 22075339 22075426 -140524504 - MER5A DNA MER1_type -95 94 3 536 170 0 30 chrX 22075628 22075728 -140524202 - FAM SINE Alu 0 185 89 2784 241 136 67 chrX 22076179 22076551 -140523379 + L2 LINE L2 1331 1676 -1638 1534 186 3 35 chrX 22076551 22076868 -140523062 + AluJo SINE Alu 1 307 -5 2351 92 0 16 chrX 22076870 22077176 -140522754 + AluSg SINE Alu 3 303 -7 2784 241 136 67 chrX 22077176 22077411 -140522519 + L2 LINE L2 1676 1893 -1421 876 157 119 19 chrX 22077411 22077570 -140522360 - FAM SINE Alu 0 175 1 2784 241 136 67 chrX 22077570 22077587 -140522343 + L2 LINE L2 1893 1907 -1407 1865 138 10 44 chrX 22077587 22077738 -140522192 - AluJo SINE Alu -25 287 149 2322 101 0 0 chrX 22077738 22078034 -140521896 - AluSx SINE Alu -16 296 1 1865 138 10 44 chrX 22078034 22078179 -140521751 - AluJo SINE Alu -163 149 1 2784 241 136 67 chrX 22078179 22078988 -140520942 + L2 LINE L2 1907 2868 -446 2065 163 52 36 chrX 22078988 22079536 -140520394 - MLT2A2 LTR ERVL 0 554 3 326 316 7 71 chrX 22079542 22079697 -140520233 + L2 LINE L2 2895 3039 -274 951 127 0 8 chrX 22079840 22079974 -140519956 - FLAM_C SINE Alu -10 133 1 2006 135 143 11 chrX 22079974 22080352 -140519578 - MSTA LTR MaLR 0 428 1 273 253 0 0 chrX 22080840 22080935 -140518995 + (TA)n Simple_repeat Simple_repeat 2 96 0 2122 100 52 0 chrX 22081582 22081871 -140518059 + AluSx SINE Alu 2 305 -7 1286 153 10 14 chrX 22081880 22082089 -140517841 + AluJo SINE Alu 85 292 -20 21 36 0 0 chrX 22082093 22082121 -140517809 + AT_rich Low_complexity Low_complexity 1 28 0 202 324 0 0 chrX 22082283 22082354 -140517576 + (TTCA)n Simple_repeat Simple_repeat 1 71 0 230 253 0 33 chrX 22082463 22082554 -140517376 - L2 LINE L2 -114 3199 3112 988 156 0 27 chrX 22082577 22082763 -140517167 - AluSg/x SINE Alu -18 294 114 673 96 0 0 chrX 22084697 22084791 -140515139 + AluSp/q SINE Alu 202 295 -18 1019 104 0 8 chrX 22085710 22085844 -140514086 - AluJb SINE Alu -179 133 1 1132 224 92 16 chrX 22085922 22086225 -140513705 - MLT1C LTR MaLR -89 378 53 2436 94 30 24 chrX 22086226 22086481 -140513449 + THE1C LTR MaLR 1 260 -115 339 155 42 0 chrX 22086481 22086552 -140513378 - L1MB2 LINE L1 -14 6157 6084 2436 94 30 24 chrX 22086552 22086669 -140513261 + THE1C LTR MaLR 260 375 0 405 316 194 39 chrX 22086698 22087084 -140512846 - L3 LINE CR1 -729 848 403 4246 134 48 14 chrX 22087111 22087837 -140512093 + L1MB4 LINE L1 5429 6179 -1 1898 131 71 30 chrX 22088200 22088234 -140511696 - L1MB3 LINE L1 -7 6176 6145 1873 107 114 7 chrX 22088234 22088505 -140511425 + AluSg1 SINE Alu 1 300 -9 1898 131 71 30 chrX 22088505 22088675 -140511255 - L1MB3 LINE L1 -38 6145 5983 1506 186 46 7 chrX 22088675 22088960 -140510970 - AluJb SINE Alu -16 296 1 1898 131 71 30 chrX 22088960 22089120 -140510810 - L1MB3 LINE L1 -200 5983 5796 1770 125 73 100 chrX 22089491 22089550 -140510380 - L1MB7 LINE L1 -8 6176 6117 2912 10 0 0 chrX 22089550 22089861 -140510069 + AluY SINE Alu 1 311 0 1770 125 73 100 chrX 22089861 22090057 -140509873 - L1MB7 LINE L1 -67 6117 5935 2141 136 0 3 chrX 22090057 22090358 -140509572 + AluSx SINE Alu 1 300 -12 1770 125 73 100 chrX 22090358 22090542 -140509388 - L1MB7 LINE L1 -249 5935 5748 2199 181 36 18 chrX 22090542 22090985 -140508945 + MLT1C LTR MaLR 1 451 -16 2099 136 128 31 chrX 22090985 22091375 -140508555 + MSTA LTR MaLR 1 428 0 921 126 0 15 chrX 22091568 22091703 -140508227 + AluSq/x SINE Alu 1 133 -180 280 259 0 0 chrX 22091871 22091929 -140508001 - MIR SINE MIR -1 261 204 311 272 133 50 chrX 22091937 22092117 -140507813 + MLT1J LTR MaLR 2 196 -315 863 252 104 62 chrX 22092119 22092575 -140507355 + MLT1J1 LTR MaLR 1 438 -8 354 304 130 20 chrX 22092614 22092861 -140507069 + MLT1J LTR MaLR 236 509 -2 2595 98 29 3 chrX 22093024 22093371 -140506559 - THE1B LTR MaLR -8 356 1 1710 169 10 26 chrX 22093786 22094088 -140505842 - AluJb SINE Alu -11 301 5 1956 143 14 0 chrX 22094346 22094633 -140505297 + AluSx SINE Alu 1 291 -21 1203 230 36 27 chrX 22095037 22095372 -140504558 + L1MEc LINE L1 404 741 -5655 2450 79 0 7 chrX 22095374 22095678 -140504252 + AluSx SINE Alu 1 302 -10 469 199 177 43 chrX 22095779 22095995 -140503935 + L1MC4 LINE L1 7784 7995 0 2506 80 3 0 chrX 22096512 22096824 -140503106 - AluSq SINE Alu 0 313 1 213 39 0 0 chrX 22097296 22097322 -140502608 + (TG)n Simple_repeat Simple_repeat 2 27 0 234 62 0 0 chrX 22097325 22097357 -140502573 + (GA)n Simple_repeat Simple_repeat 1 32 0 922 171 17 33 chrX 22097720 22097901 -140502029 + MER5B DNA MER1_type 1 178 0 2225 118 0 0 chrX 22098108 22098404 -140501526 + AluSx SINE Alu 2 297 -15 217 83 0 28 chrX 22098629 22098665 -140501265 - MER5A DNA MER1_type -24 165 131 416 200 13 0 chrX 22098765 22098840 -140501090 + MER21B LTR ERV1 12 87 -776 2734 228 109 29 chrX 22098864 22099598 -140500332 + MER21B LTR ERV1 19 811 -52 734 265 145 44 chrX 22099624 22100031 -140499899 - MLT1K LTR MaLR 0 588 141 271 139 28 69 chrX 22100198 22100270 -140499660 - MER20 DNA MER1_type 0 219 151 1037 167 0 23 chrX 22100344 22100518 -140499412 + MER20 DNA MER1_type 50 219 0 1917 247 74 60 chrX 22101490 22102203 -140497727 - MER21B LTR ERV1 -124 739 17 204 320 133 8 chrX 22102330 22102458 -140497472 - L2 LINE L2 -6 3307 3164 782 280 93 67 chrX 22102511 22102961 -140496969 + MLT1L LTR MaLR 119 580 -35 2422 97 3 0 chrX 22103536 22103845 -140496085 - AluSg SINE Alu 0 310 1 18501 23 5 0 chrX 22103906 22106814 -140493116 + L1PA4 LINE L1 3234 6152 -3 501 243 164 0 chrX 22106825 22106977 -140492953 - MER5A DNA MER1_type -1 188 12 272 325 18 0 chrX 22107104 22107218 -140492712 - MLT1I LTR MaLR -238 171 56 246 309 8 41 chrX 22107237 22107360 -140492570 - L2 LINE L2 -162 3110 2992 294 199 121 22 chrX 22107411 22107508 -140492422 + L1M LINE L1 5325 5423 -732 1100 153 107 0 chrX 22108101 22108297 -140491633 - MER20 DNA MER1_type 0 219 3 1044 266 17 14 chrX 22108726 22109023 -140490907 + L2 LINE L2 2097 2394 -920 490 252 32 19 chrX 22109024 22109179 -140490751 - MLT2E LTR ERVL -1 627 471 1819 212 36 108 chrX 22109190 22109802 -140490128 - MLT2F LTR ERVL -92 571 4 534 182 0 18 chrX 22109806 22109916 -140490014 + L2 LINE L2 2392 2499 -815 2392 60 40 10 chrX 22110494 22110795 -140489135 + AluY SINE Alu 1 310 -1 6336 118 36 12 chrX 22110804 22111645 -140488285 - L1MC1 LINE L1 -23 6310 5430 2021 131 7 4 chrX 22111645 22111952 -140487978 - AluJb SINE Alu -5 307 10 6336 118 36 12 chrX 22111952 22112145 -140487785 - L1MC1 LINE L1 -903 5430 5243 430 198 11 11 chrX 22112333 22112424 -140487506 - MER115 DNA AcHobo -12 681 591 2218 107 0 16 chrX 22112817 22113134 -140486796 - AluSx SINE Alu 0 312 1 334 274 214 8 chrX 22113205 22113322 -140486608 - MER5A DNA MER1_type -1 188 48 2402 69 3 19 chrX 22114047 22114364 -140485566 + AluSp SINE Alu 1 312 -1 2024 123 0 47 chrX 22114398 22114715 -140485215 + AluSq SINE Alu 1 302 -11 275 269 64 0 chrX 22114736 22114799 -140485131 - MLT1G LTR MaLR 0 590 532 991 162 35 83 chrX 22114799 22115028 -140484902 - MER20 DNA MER1_type -1 218 1 275 269 64 0 chrX 22115028 22115124 -140484806 - MLT1G LTR MaLR -58 532 370 422 274 92 37 chrX 22115199 22115363 -140484567 - MLT1G LTR MaLR -299 291 119 230 178 0 0 chrX 22115524 22115569 -140484361 + LTR66 LTR ERVL 395 439 -171 432 271 20 70 chrX 22115625 22115824 -140484106 - MIR SINE MIR -61 201 13 2267 127 52 0 chrX 22116242 22116572 -140483358 + MER7A DNA MER2_type 2 346 0 354 284 47 8 chrX 22116725 22116852 -140483078 + MER5A DNA MER1_type 48 179 -10 290 320 0 0 chrX 22116912 22116992 -140482938 + MIR3 SINE MIR 78 158 -50 734 259 18 6 chrX 22117054 22117220 -140482710 + MER5B DNA MER1_type 11 178 0 764 144 39 4 chrX 22117307 22117442 -140482488 + MSTB LTR MaLR 1 122 -304 1631 153 8 0 chrX 22119239 22119493 -140480437 - MER57A LTR ERV1 -147 256 1 231 268 250 0 chrX 22119890 22120002 -140479928 + MIR SINE MIR 37 176 -86 29 0 0 0 chrX 22120308 22120337 -140479593 + AT_rich Low_complexity Low_complexity 1 29 0 2204 131 0 0 chrX 22120342 22120648 -140479282 + AluJb SINE Alu 1 306 -6 340 233 67 0 chrX 22120649 22120739 -140479191 - MIR SINE MIR -6 256 161 2228 72 3 46 chrX 22120921 22121228 -140478702 - AluSg SINE Alu -16 294 1 3901 116 18 3 chrX 22121228 22121839 -140478091 - L1M1 LINE L1 -4487 3078 2459 2266 101 3 0 chrX 22122032 22122329 -140477601 + AluSx SINE Alu 1 298 -14 230 334 75 56 chrX 22122339 22122425 -140477505 - L1MEd LINE L1 -5328 791 708 1632 138 32 28 chrX 22122425 22122707 -140477223 - AluJo SINE Alu -17 295 13 230 334 75 56 chrX 22122707 22122925 -140477005 - L1MEd LINE L1 -5411 708 481 848 164 0 15 chrX 22123251 22123385 -140476545 + FLAM_A SINE Alu 1 132 -1 23 0 0 0 chrX 22123425 22123448 -140476482 + AT_rich Low_complexity Low_complexity 1 23 0 716 273 47 25 chrX 22123517 22123795 -140476135 - L1MEd LINE L1 -4884 1646 1363 1362 251 87 63 chrX 22123805 22124310 -140475620 + LTR33A LTR ERVL 7 523 0 2558 44 0 0 chrX 22124361 22124657 -140475273 - AluY SINE Alu -15 296 1 339 312 0 50 chrX 22124661 22124699 -140475231 - L1MEd LINE L1 -6373 167 129 2237 170 135 18 chrX 22124699 22125151 -140474779 + MLT1D LTR MaLR 1 505 0 339 312 0 50 chrX 22125151 22125253 -140474677 - L1MEd LINE L1 -6411 129 34 406 202 175 0 chrX 22125313 22125427 -140474503 - L1MC4a LINE L1 -939 6869 6736 1997 125 7 3 chrX 22126128 22126423 -140473507 + AluSx SINE Alu 1 296 -16 1228 296 62 11 chrX 22126469 22126936 -140472994 + LTR16C LTR ERVL 1 491 0 488 316 65 30 chrX 22127295 22127757 -140472173 - MER20B DNA MER1_type 0 783 306 244 253 42 42 chrX 22128974 22129069 -140470861 + L1 LINE L1 4630 4724 -1422 1984 150 0 13 chrX 22129095 22129395 -140470535 - AluJo SINE Alu -16 296 1 321 295 17 15 chrX 22129423 22129556 -140470374 - L1MEd LINE L1 -847 1643 1493 2050 96 0 7 chrX 22129558 22129838 -140470092 + AluSq SINE Alu 34 311 -2 271 272 19 19 chrX 22129947 22130050 -140469880 - L1MC4 LINE L1 0 8042 7940 618 269 84 47 chrX 22130105 22130511 -140469419 - L1MEd LINE L1 -1042 1448 938 2502 87 0 0 chrX 22130756 22131068 -140468862 - AluSp SINE Alu -1 312 1 3172 198 44 19 chrX 22131136 22131823 -140468107 - L1ME3 LINE L1 -67 6095 5392 986 206 22 38 chrX 22131971 22132202 -140467728 - MIR SINE MIR -24 238 4 7410 61 13 0 chrX 22132343 22133547 -140466383 - L1PA8 LINE L1 -15 6157 4949 1275 54 0 0 chrX 22133547 22133694 -140466236 - L1MA2 LINE L1 -18 6286 6138 2278 115 0 0 chrX 22133694 22133999 -140465931 - AluSx SINE Alu -7 305 1 331 225 90 34 chrX 22135199 22135288 -140464642 - MER5A DNA MER1_type -3 186 93 1230 188 47 76 chrX 22135289 22135696 -140464234 - MLT1A1 LTR MaLR 0 457 1 7608 114 16 4 chrX 22135869 22136965 -140462965 - Tigger2 DNA MER2_type -1608 1110 1 2094 99 42 3 chrX 22136995 22137278 -140462652 - AluSx SINE Alu -18 294 1 225 0 0 0 chrX 22137343 22137368 -140462562 + (TA)n Simple_repeat Simple_repeat 2 26 0 1225 103 62 16 chrX 22137398 22137592 -140462338 - L1PA16 LINE L1 -9 6157 5955 591 260 30 24 chrX 22137785 22137954 -140461976 - MLT1H LTR MaLR -379 170 1 610 244 6 24 chrX 22138244 22138408 -140461522 + MLT1H LTR MaLR 10 170 -379 2642 228 44 53 chrX 22138543 22139380 -140460550 + L1MC4 LINE L1 6833 7662 -380 13162 32 1 0 chrX 22139522 22141071 -140458859 - L1P LINE L1 -1329 4817 3268 6717 122 6 24 chrX 22141187 22142249 -140457681 + MER11C LTR ERVK 15 1057 -14 572 57 0 0 chrX 22142288 22142358 -140457572 - MER11B LTR ERVK -1166 70 1 462 290 37 19 chrX 22142362 22142524 -140457406 - LTR33 LTR ERVL -102 419 255 1237 136 78 127 chrX 22142638 22142970 -140456960 - MLT2C1 LTR ERVL 0 397 82 723 229 78 6 chrX 22143120 22143299 -140456631 + L2 LINE L2 3122 3313 0 1788 140 9 62 chrX 22143350 22143672 -140456258 - AluJb SINE Alu -7 305 1 2708 177 31 43 chrX 22143813 22144368 -140455562 - MLT1F1 LTR MaLR 0 567 20 926 115 0 43 chrX 22145748 22145887 -140454043 + FLAM_C SINE Alu 1 133 0 2519 116 0 76 chrX 22146672 22146728 -140453202 - MER4B LTR ERV1 0 610 551 2178 101 7 3 chrX 22146728 22147024 -140452906 + AluSx SINE Alu 1 297 -15 2519 116 0 76 chrX 22147024 22147417 -140452513 - MER4B LTR ERV1 -59 551 195 2333 100 0 3 chrX 22147541 22147850 -140452080 - AluSq SINE Alu -5 308 1 253 218 0 55 chrX 22147850 22147905 -140452025 - MER20 DNA MER1_type -163 56 5 439 255 130 56 chrX 22147905 22148136 -140451794 - L1ME4a LINE L1 -240 5881 5634 2449 87 0 3 chrX 22148141 22148451 -140451479 - AluSg SINE Alu -1 309 1 741 150 30 4 chrX 22148498 22148752 -140451178 + L1MB5 LINE L1 5587 5882 -292 456 125 14 0 chrX 22148756 22148828 -140451102 - LTR35 LTR ERV1 -4 614 542 * 1314 121 0 42 chrX 22148820 22149035 -140450895 - LTR35 LTR ERV1 -228 390 185 252 0 0 0 chrX 22149678 22149706 -140450224 + (TA)n Simple_repeat Simple_repeat 1 28 0 1955 139 84 8 chrX 22149906 22150273 -140449657 + L1MA8 LINE L1 5896 6290 -1 436 281 146 20 chrX 22152109 22152308 -140447622 + LTR33 LTR ERVL 46 269 -252 2016 221 24 44 chrX 22152321 22152824 -140447106 - MLT2B1 LTR ERVL 0 520 28 575 224 235 0 chrX 22152824 22153020 -140446910 + LTR33 LTR ERVL 279 520 -1 183 283 65 11 chrX 22153306 22153398 -140446532 + L2 LINE L2 3217 3313 0 1351 146 38 0 chrX 22153770 22153983 -140445947 + AluJb SINE Alu 82 302 -10 1319 193 122 55 chrX 22154267 22154651 -140445279 + MER31B LTR ERV1 1 410 -56 215 317 0 0 chrX 22154891 22154951 -140444979 - MIR SINE MIR -14 248 189 * 466 227 184 0 chrX 22154949 22155090 -140444840 + MIR SINE MIR 71 237 -25 831 192 73 19 chrX 22155090 22155304 -140444626 - MLT1A2 LTR MaLR 0 374 179 2532 59 0 0 chrX 22155310 22155616 -140444314 + AluY SINE Alu 1 306 -5 1605 84 57 0 chrX 22155616 22155843 -140444087 + MSTA LTR MaLR 189 428 0 1735 109 69 47 chrX 22156198 22156518 -140443412 + L1MA7 LINE L1 5963 6289 -2 259 154 64 51 chrX 22156874 22156952 -140442978 + L1ME4a LINE L1 6030 6108 -13 813 268 84 0 chrX 22157035 22157248 -140442682 - MIR SINE MIR -21 241 11 2207 76 18 0 chrX 22158163 22158465 -140441465 - AluSp SINE Alu 0 307 1 262 295 54 31 chrX 22158694 22158823 -140441107 - L2 LINE L2 -1075 2239 2108 742 256 126 70 chrX 22159299 22159744 -140440186 - MLT1H LTR MaLR 0 549 80 2296 144 67 31 chrX 22160424 22160841 -140439089 + MSTB1 LTR MaLR 1 432 0 2687 147 92 26 chrX 22161280 22161826 -140438104 + L1MB8 LINE L1 5597 6178 0 293 278 82 0 chrX 22162183 22162280 -140437650 + L2 LINE L2 3209 3313 0 2119 128 0 0 chrX 22163477 22163766 -140436164 + AluSx SINE Alu 9 297 -15 403 167 71 12 chrX 22164613 22164697 -140435233 - MLT1L LTR MaLR -2 613 525 2378 162 20 0 chrX 22164704 22165099 -140434831 - MER57A LTR ERV1 0 403 1 1500 107 120 9 chrX 22165099 22165332 -140434598 - MER57A-int LTR ERV1 0 7537 7279 503 61 24 49 chrX 22165332 22165414 -140434516 - LTR54B LTR ERV1 -367 131 52 17007 129 14 17 chrX 22165417 22167996 -140431934 - MER57A-int LTR ERV1 -4968 2569 1 2310 159 15 29 chrX 22167996 22168025 -140431905 - MER57A LTR ERV1 0 403 375 2365 81 0 13 chrX 22168025 22168280 -140431650 - AluSx SINE Alu -7 305 53 318 26 0 0 chrX 22168280 22168319 -140431611 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 2365 81 0 13 chrX 22168319 22168372 -140431558 - AluSx SINE Alu -259 53 1 2310 159 15 29 chrX 22168372 22168751 -140431179 - MER57A LTR ERV1 -28 375 1 192 267 238 0 chrX 22169159 22169260 -140430670 + MIR SINE MIR 52 176 -86 29 0 0 0 chrX 22169566 22169595 -140430335 + AT_rich Low_complexity Low_complexity 1 29 0 2222 131 0 0 chrX 22169600 22169906 -140430024 + AluJb SINE Alu 1 306 -6 313 222 62 0 chrX 22169916 22169997 -140429933 - MIR SINE MIR -16 246 161 374 53 18 0 chrX 22170126 22170183 -140429747 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2354 67 0 7 chrX 22170190 22170472 -140429458 - AluSg SINE Alu -30 280 1 290 139 208 14 chrX 22170755 22170827 -140429103 - L1ME3A LINE L1 -272 5898 5813 648 232 65 13 chrX 22170831 22170986 -140428944 - MIR SINE MIR -98 164 2 227 79 26 0 chrX 22171093 22171131 -140428799 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 289 54 27 0 chrX 22171304 22171341 -140428589 + MER68 LTR ERV1 354 391 -171 2411 64 3 3 chrX 22171523 22171819 -140428111 - AluY SINE Alu -15 296 1 1117 214 14 0 chrX 22172553 22172773 -140427157 - MER58A DNA MER1_type 0 224 2 3077 155 37 37 chrX 22172950 22173009 -140426921 + MER68 LTR ERV1 1 59 -503 2086 131 0 0 chrX 22173009 22173319 -140426611 + AluSx SINE Alu 1 310 0 3077 155 37 37 chrX 22173319 22173820 -140426110 + MER68 LTR ERV1 58 562 0 2120 116 0 20 chrX 22174357 22174495 -140425435 + AluJb SINE Alu 1 140 -172 2369 69 0 14 chrX 22174495 22174808 -140425122 + AluY SINE Alu 1 311 0 2120 116 0 20 chrX 22174808 22174971 -140424959 + AluJb SINE Alu 140 296 -16 649 131 10 0 chrX 22175195 22175294 -140424636 + LTR8A LTR ERV1 1 100 -627 24 53 0 0 chrX 22176827 22176865 -140423065 + AT_rich Low_complexity Low_complexity 1 38 0 245 265 0 26 chrX 22176897 22177014 -140422916 + (TA)n Simple_repeat Simple_repeat 1 114 0 2319 105 0 0 chrX 22177044 22177340 -140422590 - AluSx SINE Alu -16 296 1 2020 179 5 29 chrX 22177562 22177936 -140421994 - MLT1A1 LTR MaLR 0 365 1 243 348 82 13 chrX 22178259 22178417 -140421513 + L2 LINE L2 2607 2775 -539 540 301 29 19 chrX 22178456 22178662 -140421268 - MIR SINE MIR -4 258 51 3559 198 41 26 chrX 22178670 22179509 -140420421 + L1ME1 LINE L1 4620 5444 -722 1946 99 0 0 chrX 22179509 22179783 -140420147 + AluY SINE Alu 39 312 0 3559 198 41 26 chrX 22179783 22180153 -140419777 + L1ME1 LINE L1 5444 5848 -318 1800 190 3 0 chrX 22180153 22180443 -140419487 - AluJb SINE Alu -21 291 1 3559 198 41 26 chrX 22180443 22180755 -140419175 + L1ME1 LINE L1 5848 6154 -12 2027 118 0 51 chrX 22180808 22181121 -140418809 + AluJb SINE Alu 1 297 -15 618 95 0 0 chrX 22181436 22181531 -140418399 + (CA)n Simple_repeat Simple_repeat 2 96 0 1155 301 53 6 chrX 22181787 22182256 -140417674 + LTR16C LTR ERVL 1 491 0 473 306 60 29 chrX 22182616 22183099 -140416831 - MER20B DNA MER1_type 0 783 286 1032 105 0 0 chrX 22185216 22185427 -140414503 + (CTG)n Simple_repeat Simple_repeat 1 211 0 219 248 0 0 chrX 22186090 22186195 -140413735 + (CAG)n Simple_repeat Simple_repeat 3 107 0 23 78 0 0 chrX 22186739 22186790 -140413140 + AT_rich Low_complexity Low_complexity 1 51 0 1518 211 35 3 chrX 22186813 22187159 -140412771 - L1MB2 LINE L1 -3 6168 5812 2262 189 51 14 chrX 22187788 22188281 -140411649 - L1MB5 LINE L1 0 6174 5664 1254 158 167 12 chrX 22189247 22189583 -140410347 - Charlie5 DNA MER1_type 0 2624 2237 751 146 8 0 chrX 22189586 22189709 -140410221 - Charlie5 DNA MER1_type -2488 124 1 2378 77 13 3 chrX 22190059 22190357 -140409573 - AluSx SINE Alu -11 301 1 443 150 40 50 chrX 22190432 22190532 -140409398 + L1MC5 LINE L1 7811 7909 -52 245 252 122 61 chrX 22191794 22191925 -140408005 - MIR SINE MIR -56 206 68 498 222 0 0 chrX 22193107 22193233 -140406697 + (CA)n Simple_repeat Simple_repeat 1 126 0 1012 218 14 36 chrX 22193743 22194023 -140405907 - L2 LINE L2 -2435 879 606 378 0 0 0 chrX 22194103 22194145 -140405785 + (TG)n Simple_repeat Simple_repeat 1 42 0 2120 93 0 4 chrX 22194145 22194425 -140405505 - AluSx SINE Alu -33 279 1 181 362 110 17 chrX 22194444 22194745 -140405185 - L2 LINE L2 -22 3250 2922 1858 123 22 66 chrX 22194896 22195213 -140404717 + AluJb SINE Alu 5 307 -5 2055 143 3 7 chrX 22195790 22196098 -140403832 + AluSx SINE Alu 1 307 -5 340 241 13 0 chrX 22196165 22196244 -140403686 + MER116 DNA Mariner 1 80 0 268 295 32 21 chrX 22196526 22196621 -140403309 + MIR SINE MIR 121 216 -46 252 214 18 0 chrX 22196652 22196708 -140403222 + MER5A DNA MER1_type 20 76 -113 414 0 0 0 chrX 22197118 22197164 -140402766 + (TG)n Simple_repeat Simple_repeat 1 46 0 202 244 22 0 chrX 22197501 22197546 -140402384 + MER5A DNA MER1_type 61 106 -83 396 0 0 0 chrX 22197558 22197602 -140402328 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 825 147 0 8 chrX 22197602 22197720 -140402210 - FLAM_C SINE Alu -192 120 2 238 273 0 0 chrX 22197723 22197778 -140402152 + MER5A DNA MER1_type 129 183 -6 326 297 26 26 chrX 22197941 22198096 -140401834 + MIR SINE MIR 53 207 -55 195 42 0 0 chrX 22198300 22198324 -140401606 + (CA)n Simple_repeat Simple_repeat 2 25 0 908 179 12 0 chrX 22198657 22198830 -140401100 - MER5A DNA MER1_type 0 189 15 189 0 0 0 chrX 22198929 22198950 -140400980 + (T)n Simple_repeat Simple_repeat 1 21 0 413 110 30 100 chrX 22198988 22199088 -140400842 - MER5A DNA MER1_type -92 97 5 1804 159 3 10 chrX 22199905 22200194 -140399736 - AluJb SINE Alu -25 287 1 577 147 0 29 chrX 22200789 22200891 -140399039 + MER53 DNA DNA 2 100 -89 * 760 154 103 69 chrX 22200883 22201058 -140398872 - MER3 DNA MER1_type -28 181 1 910 193 28 6 chrX 22201568 22201749 -140398181 - MER5A DNA MER1_type -4 185 1 253 293 38 53 chrX 22202035 22202168 -140397762 - MIR SINE MIR -99 163 33 312 0 26 0 chrX 22202507 22202545 -140397385 + L1MB2 LINE L1 6097 6135 -36 2545 147 37 4 chrX 22203111 22203396 -140396534 - L1MA4 LINE L1 0 6482 6175 2265 97 61 19 chrX 22203396 22203756 -140396174 + THE1C LTR MaLR 1 375 0 2545 147 37 4 chrX 22203756 22203925 -140396005 - L1MA4 LINE L1 -307 6175 6013 26 0 0 0 chrX 22204027 22204053 -140395877 + AT_rich Low_complexity Low_complexity 1 26 0 4067 144 9 9 chrX 22204131 22205306 -140394624 - L1MA4 LINE L1 -474 6013 4838 2666 181 26 22 chrX 22205306 22206180 -140393750 - L1MA4 LINE L1 -3685 2643 1769 7103 163 33 4 chrX 22206183 22207706 -140392224 - L1MA4 LINE L1 -4065 1263 118 2183 109 7 0 chrX 22207807 22208090 -140391840 - AluSx SINE Alu -27 285 1 551 240 103 34 chrX 22208392 22208567 -140391363 - MLT1K LTR MaLR -24 564 378 2111 173 41 83 chrX 22208622 22209178 -140390752 - LTR9 LTR ERV1 0 612 80 714 280 73 5 chrX 22209342 22209560 -140390370 + LTR33 LTR ERVL 118 350 -171 3731 133 26 22 chrX 22209562 22210186 -140389744 - L1MB2 LINE L1 -263 5908 5283 2230 117 0 3 chrX 22210466 22210766 -140389164 - AluSx SINE Alu -13 299 1 1126 155 62 0 chrX 22210898 22211092 -140388838 + MER3 DNA MER1_type 4 209 0 931 220 44 4 chrX 22211646 22211873 -140388057 + MIR SINE MIR 27 262 0 450 273 23 0 chrX 22212072 22212204 -140387726 - LTR16A1 LTR ERVL -2 455 321 22 0 0 30 chrX 22212214 22212227 -140387703 + AT_rich Low_complexity Low_complexity 1 13 -19 1056 32 0 0 chrX 22212227 22212351 -140387579 - L1PA3 LINE L1 0 6155 6032 256 114 0 23 chrX 22212316 22212360 -140387570 - L1PA6 LINE L1 -89 6065 6023 22 0 0 30 chrX 22212351 22212370 -140387560 + AT_rich Low_complexity Low_complexity 13 32 0 * 234 271 37 37 chrX 22212378 22212485 -140387445 - LTR16A1 LTR ERVL -142 315 209 592 267 56 6 chrX 22212761 22212941 -140386989 - MER5A DNA MER1_type 0 189 1 1025 216 148 68 chrX 22213215 22213365 -140386565 - LTR16C LTR ERVL 0 491 354 2556 67 0 6 chrX 22213365 22213677 -140386253 + AluSg SINE Alu 1 310 0 1025 216 148 68 chrX 22213677 22213979 -140385951 - LTR16C LTR ERVL -137 354 3 416 342 87 27 chrX 22215232 22215671 -140384259 + L3 LINE CR1 1062 1526 -51 2122 95 9 80 chrX 22215682 22216007 -140383923 - AluSx SINE Alu -10 302 1 231 263 118 0 chrX 22216017 22216093 -140383837 - Charlie4 DNA MER1_type -5 1956 1872 2526 69 3 3 chrX 22216280 22216586 -140383344 - AluSp SINE Alu -7 306 1 318 306 41 25 chrX 22218070 22218191 -140381739 - L2 LINE L2 -18 3254 3132 843 180 133 16 chrX 22218535 22218763 -140381167 - MIR SINE MIR -1 261 23 363 106 39 39 chrX 22219098 22219202 -140380728 + (TTAGGG)n Simple_repeat Simple_repeat 2 105 0 493 231 0 38 chrX 22219232 22219418 -140380512 + (TTAGGG)n Simple_repeat Simple_repeat 1 179 0 740 182 0 0 chrX 22219793 22219914 -140380016 + MER63 DNA MER1_type 941 1061 0 288 0 0 0 chrX 22220258 22220290 -140379640 + (CA)n Simple_repeat Simple_repeat 2 33 0 463 201 0 125 chrX 22220335 22220479 -140379451 - MLT1H LTR MaLR 0 549 424 494 244 42 42 chrX 22220615 22220783 -140379147 - MLT1H LTR MaLR -379 170 3 255 282 57 119 chrX 22221205 22221323 -140378607 + MIR SINE MIR 40 139 -123 2366 103 0 0 chrX 22221323 22221633 -140378297 - AluSg SINE Alu 0 310 1 255 282 57 119 chrX 22221633 22221741 -140378189 + MIR SINE MIR 139 252 -10 426 39 0 0 chrX 22222090 22222142 -140377788 + (CA)n Simple_repeat Simple_repeat 2 53 0 2418 99 0 3 chrX 22223080 22223393 -140376537 - AluSx SINE Alu 0 312 1 5243 171 31 22 chrX 22223877 22223940 -140375990 - L1MB2 LINE L1 0 6171 6110 5538 71 8 1 chrX 22223940 22224656 -140375274 - L1PA10 LINE L1 -1 6167 5447 5243 171 31 22 chrX 22224656 22226509 -140373421 - L1MB2 LINE L1 -61 6110 4235 2413 76 0 0 chrX 22226537 22226826 -140373104 - AluSc SINE Alu -20 289 1 1822 161 7 7 chrX 22227606 22227904 -140372026 - AluJo SINE Alu -14 298 1 594 219 78 0 chrX 22227942 22228070 -140371860 - LTR67 LTR ERVL -11 546 409 2045 119 0 14 chrX 22228204 22228517 -140371413 - AluSx SINE Alu 0 309 1 353 217 12 12 chrX 22228583 22228666 -140371264 + MLT1L LTR MaLR 531 613 -2 233 250 0 0 chrX 22229503 22229559 -140370371 + LTR16A LTR ERVL 2 57 -393 460 291 23 70 chrX 22229664 22229922 -140370008 + LTR16B LTR ERVL 219 464 0 2339 95 7 0 chrX 22230007 22230311 -140369619 - AluSq SINE Alu -7 306 1 294 92 0 4 chrX 22230594 22230641 -140369289 + MADE1 DNA Mariner 1 38 -42 2522 72 3 0 chrX 22230790 22231095 -140368835 + AluSp SINE Alu 1 306 -7 193 200 146 0 chrX 22231201 22231256 -140368674 + MIR SINE MIR 79 141 -121 353 273 148 34 chrX 22231310 22231486 -140368444 - MIR SINE MIR -49 213 18 259 220 30 100 chrX 22232757 22232789 -140367141 + MIR SINE MIR 72 105 -157 1161 224 97 80 chrX 22232789 22233241 -140366689 + LTR16B LTR ERVL 5 464 0 259 220 30 100 chrX 22233241 22233308 -140366622 + MIR SINE MIR 105 164 -98 494 256 62 31 chrX 22233313 22233508 -140366422 - Charlie7 DNA MER1_type -2410 202 2 397 151 68 0 chrX 22234307 22234380 -140365550 - L1MB8 LINE L1 -1 6177 6100 291 30 0 0 chrX 22234380 22234413 -140365517 - U2 snRNA snRNA -155 33 1 262 88 31 7 chrX 22234416 22234457 -140365473 - L1MB7 LINE L1 -67 6113 6067 1466 213 38 45 chrX 22234457 22234857 -140365073 + MLT2C1 LTR ERVL 1 397 0 262 88 31 7 chrX 22234857 22234871 -140365059 - L1MB7 LINE L1 -113 6067 6055 308 339 0 8 chrX 22235076 22235200 -140364730 + L2 LINE L2 3159 3281 -32 2054 162 66 16 chrX 22235205 22235582 -140364348 + MSTD LTR MaLR 1 396 0 559 186 0 10 chrX 22235584 22235686 -140364244 + MSTD-int LTR MaLR 2 102 -1269 861 204 0 0 chrX 22235687 22235839 -140364091 + FAM SINE Alu 1 152 -33 22 35 0 0 chrX 22235841 22235870 -140364060 + AT_rich Low_complexity Low_complexity 1 29 0 5724 204 67 77 chrX 22235870 22237147 -140362783 + MSTD-int LTR MaLR 90 1378 -357 1721 157 11 11 chrX 22237147 22237421 -140362509 + AluJo SINE Alu 1 274 -38 2469 59 3 0 chrX 22237425 22237711 -140362219 - AluSq SINE Alu -17 296 10 5724 204 67 77 chrX 22237711 22237932 -140361998 + MSTD-int LTR MaLR 1381 1578 -157 1821 190 64 19 chrX 22237932 22238305 -140361625 + MSTD LTR MaLR 7 396 0 874 289 93 37 chrX 22238422 22238900 -140361030 + MLT1H LTR MaLR 1 549 0 188 356 17 0 chrX 22238966 22239025 -140360905 - L2 LINE L2 -25 3247 3188 1831 124 19 1 chrX 22239041 22239409 -140360521 + L1MB7 LINE L1 5089 5465 -741 845 195 34 7 chrX 22239404 22239602 -140360328 + L1MA9 LINE L1 6103 6300 0 * 4373 150 27 4 chrX 22239628 22240360 -140359570 + L1MB7 LINE L1 5432 6180 -4 183 301 0 86 chrX 22240361 22240454 -140359476 - MIR SINE MIR -96 112 28 1692 169 49 14 chrX 22240560 22240844 -140359086 - AluJo SINE Alu -18 294 1 383 264 29 70 chrX 22240844 22240912 -140359018 - L1ME4a LINE L1 -234 5887 5818 8439 151 21 14 chrX 22240912 22242107 -140357823 - L1PA15 LINE L1 -7 6158 4972 1832 95 191 35 chrX 22242107 22242422 -140357508 - THE1B LTR MaLR 0 364 1 8439 151 21 14 chrX 22242422 22242730 -140357200 - L1PA15 LINE L1 -1193 4972 4667 2366 88 0 3 chrX 22242730 22243026 -140356904 - AluY SINE Alu -16 295 1 8439 151 21 14 chrX 22243026 22243820 -140356110 - L1PA15 LINE L1 -1498 4667 3847 383 264 29 70 chrX 22243820 22243906 -140356024 - L1ME4a LINE L1 -303 5818 5744 2572 59 0 0 chrX 22243906 22244209 -140355721 - AluY SINE Alu -8 303 1 383 264 29 70 chrX 22244209 22244295 -140355635 - L1ME4a LINE L1 -377 5744 5656 812 190 12 12 chrX 22244321 22244484 -140355446 - L1ME3A LINE L1 0 6170 6008 820 189 11 28 chrX 22244933 22245113 -140354817 - MER5B DNA MER1_type -1 177 1 347 137 14 0 chrX 22246522 22246595 -140353335 + GA-rich Low_complexity Low_complexity 1 74 0 626 229 26 20 chrX 22246648 22246801 -140353129 + MIR SINE MIR 18 171 -91 260 243 162 14 chrX 22247434 22247508 -140352422 + LTR67 LTR ERVL 104 188 -369 933 106 61 0 chrX 22247866 22247998 -140351932 + AluSg/x SINE Alu 155 294 -15 693 272 11 0 chrX 22248074 22248254 -140351676 + MER91A DNA MER1_type 1 182 -14 319 283 29 87 chrX 22249120 22249189 -140350741 + LTR16C LTR ERVL 1 60 -431 2371 88 0 0 chrX 22249189 22249484 -140350446 - AluSx SINE Alu -17 295 1 319 283 29 87 chrX 22249484 22249552 -140350378 + LTR16C LTR ERVL 60 130 -361 882 188 18 18 chrX 22249586 22249747 -140350183 + LTR16C LTR ERVL 275 435 -56 1739 129 23 0 chrX 22249747 22250003 -140349927 - Tigger5 DNA MER2_type 0 2323 2062 305 214 0 0 chrX 22250001 22250057 -140349873 - Tigger5 DNA MER2_type -2261 62 7 * 2094 159 50 14 chrX 22250114 22250473 -140349457 + MSTA LTR MaLR 1 372 -56 382 68 203 0 chrX 22250921 22250980 -140348950 + MSTA LTR MaLR 356 426 0 767 179 0 0 chrX 22251441 22251564 -140348366 + FLAM_A SINE Alu 4 126 -7 2027 166 19 55 chrX 22251574 22251698 -140348232 - L1MA5 LINE L1 -248 6052 5925 886 233 0 0 chrX 22251698 22251870 -140348060 - FAM SINE Alu -3 172 1 2027 166 19 55 chrX 22251870 22252166 -140347764 - L1MA5 LINE L1 -375 5925 5647 245 261 85 15 chrX 22252476 22252606 -140347324 - L1ME4a LINE L1 -13 6108 5970 236 333 54 0 chrX 22252628 22252796 -140347134 - L1ME4a LINE L1 -239 5882 5706 352 279 74 98 chrX 22252915 22253130 -140346800 - L2 LINE L2 -9 3263 3054 540 306 106 13 chrX 22253164 22253465 -140346465 - L2 LINE L2 -168 3145 2817 3789 57 0 11 chrX 22253775 22254028 -140345902 + L1PA8 LINE L1 5700 5947 -225 3506 84 18 12 chrX 22254028 22254518 -140345412 - LTR15 LTR ERV1 0 493 1 3789 57 0 11 chrX 22254518 22254742 -140345188 + L1PA8 LINE L1 5947 6172 0 2349 94 3 0 chrX 22254991 22255290 -140344640 + AluSx SINE Alu 1 300 -12 3611 163 69 7 chrX 22255322 22256142 -140343788 + L1MB7 LINE L1 5143 6013 -171 374 298 149 34 chrX 22256194 22256429 -140343501 + L2 LINE L2 3006 3267 -5 2192 98 31 0 chrX 22256597 22256884 -140343046 - AluSx SINE Alu -15 297 2 23 0 0 0 chrX 22256884 22256907 -140343023 + AT_rich Low_complexity Low_complexity 1 23 0 1685 127 7 73 chrX 22256907 22257207 -140342723 - AluJo SINE Alu -31 281 2 382 232 134 12 chrX 22257215 22257379 -140342551 - MER112 DNA MER1_type -75 185 2 2188 110 13 13 chrX 22257524 22257834 -140342096 - AluSx SINE Alu -2 310 1 404 324 33 29 chrX 22258210 22258349 -140341581 + MIR SINE MIR 14 156 -106 487 101 25 13 chrX 22258349 22258428 -140341502 - MER116 DNA Mariner 0 80 1 404 324 33 29 chrX 22258428 22258498 -140341432 + MIR SINE MIR 156 224 -38 681 275 5 41 chrX 22258870 22259088 -140340842 + MER63A DNA MER1_type 1 210 0 2060 125 17 3 chrX 22259625 22259921 -140340009 + AluJb SINE Alu 1 300 -12 1414 241 93 30 chrX 22259952 22260589 -140339341 + MER20B DNA MER1_type 1 762 -21 2205 98 37 7 chrX 22260589 22260884 -140339046 + AluSx SINE Alu 1 304 -8 1414 241 93 30 chrX 22260884 22260908 -140339022 + MER20B DNA MER1_type 762 783 0 209 250 19 0 chrX 22261616 22261668 -140338262 - L2 LINE L2 -10 3262 3210 702 160 44 138 chrX 22261843 22261935 -140337995 + L1ME3A LINE L1 5961 6060 -110 2094 118 26 9 chrX 22261935 22262281 -140337649 - L1MB2 LINE L1 -2 6169 5818 2430 92 0 3 chrX 22262290 22262595 -140337335 - AluSx SINE Alu -8 304 1 702 160 44 138 chrX 22262595 22262717 -140337213 + L1ME3A LINE L1 6068 6164 -6 2191 136 97 8 chrX 22262771 22263162 -140336768 + MSTB LTR MaLR 1 426 0 2616 89 28 14 chrX 22263479 22263838 -140336092 - THE1B LTR MaLR 0 364 1 926 144 10 101 chrX 22263873 22264081 -140335849 + MER53 DNA DNA 1 189 0 353 302 17 0 chrX 22265125 22265241 -140334689 + MIR3 SINE MIR 82 199 -9 1531 98 5 0 chrX 22265364 22265558 -140334372 + AluSx SINE Alu 1 195 -117 1533 209 44 71 chrX 22266578 22266984 -140332946 - MSTD LTR MaLR -1 395 1 2445 138 99 54 chrX 22266989 22267453 -140332477 + MLT1D LTR MaLR 21 505 0 1144 312 131 31 chrX 22267534 22268809 -140331121 - L2 LINE L2 -26 3246 1860 1907 155 89 3 chrX 22269044 22269380 -140330550 - MLT1A1 LTR MaLR 0 365 1 433 256 17 35 chrX 22270508 22270649 -140329281 - MIR3 SINE MIR -39 169 34 547 244 0 30 chrX 22270729 22270860 -140329070 - MIR SINE MIR -74 188 62 364 199 254 97 chrX 22271484 22271702 -140328228 + L1M4 LINE L1 5483 5734 -450 389 141 14 0 chrX 22271715 22271786 -140328144 + GA-rich Low_complexity Low_complexity 3 74 0 1116 218 127 32 chrX 22272066 22272374 -140327556 + LTR16C LTR ERVL 151 487 -4 2103 143 0 0 chrX 22272846 22273146 -140326784 + AluJb SINE Alu 1 300 -12 2909 107 16 34 chrX 22273485 22273823 -140326107 - MSTB1 LTR MaLR 0 432 102 2589 83 22 19 chrX 22273823 22274186 -140325744 + THE1B LTR MaLR 1 364 0 2909 107 16 34 chrX 22274186 22274287 -140325643 - MSTB1 LTR MaLR -330 102 1 313 156 42 73 chrX 22274336 22274438 -140325492 + MIR SINE MIR 63 164 -44 1320 127 49 118 chrX 22274538 22274703 -140325227 - MER33 DNA MER1_type -2261 324 149 2081 104 60 60 chrX 22274703 22275013 -140324917 - THE1B LTR MaLR 0 364 52 2296 96 10 13 chrX 22275013 22275314 -140324616 - AluSg SINE Alu -10 300 1 2081 104 60 60 chrX 22275314 22275367 -140324563 - THE1B LTR MaLR -311 53 1 1320 127 49 118 chrX 22275367 22275410 -140324520 - MER33 DNA MER1_type -2436 149 105 726 187 0 8 chrX 22275410 22275533 -140324397 + FLAM_A SINE Alu 1 122 -11 1320 127 49 118 chrX 22275533 22275670 -140324260 - MER33 DNA MER1_type -2480 105 2 2194 106 36 0 chrX 22275880 22276181 -140323749 - AluSx SINE Alu 0 312 1 1761 160 0 21 chrX 22276854 22277170 -140322760 - AluJb SINE Alu 0 310 1 351 273 47 7 chrX 22277185 22277335 -140322595 - L1ME4a LINE L1 -216 5905 5750 547 308 58 76 chrX 22277539 22277550 -140322380 - MLT1L LTR MaLR -6 609 599 1883 151 31 0 chrX 22277550 22277841 -140322089 - AluJb SINE Alu -12 300 1 547 308 58 76 chrX 22277841 22278449 -140321481 - MLT1L LTR MaLR -16 599 1 2198 71 0 91 chrX 22278688 22279025 -140320905 + AluSx SINE Alu 1 309 0 240 191 0 0 chrX 22279152 22279199 -140320731 + L1MA3 LINE L1 6259 6305 0 3589 144 20 5 chrX 22279366 22279965 -140319965 + L1MC1 LINE L1 5721 6328 -5 492 252 47 8 chrX 22279994 22280121 -140319809 + MIR SINE MIR 20 151 -111 369 313 117 36 chrX 22280489 22280770 -140319160 - L2 LINE L2 -1 3312 3009 2220 113 7 3 chrX 22280863 22281164 -140318766 + AluSx SINE Alu 1 302 -10 813 222 6 33 chrX 22281182 22281362 -140318568 - MLT1F1 LTR MaLR -2 565 391 243 236 55 0 chrX 22281369 22281424 -140318506 - MLT1E LTR MaLR -145 448 391 258 164 0 0 chrX 22281428 22281483 -140318447 + GA-rich Low_complexity Low_complexity 1 55 0 591 117 7 117 chrX 22281499 22281636 -140318294 - L1MC3 LINE L1 -117 7668 7547 2432 86 0 10 chrX 22281675 22281988 -140317942 - AluSx SINE Alu -2 310 1 1732 75 106 0 chrX 22282011 22282266 -140317664 - L1MA5A LINE L1 -5 6292 6011 884 110 0 0 chrX 22282282 22282409 -140317521 - L1MA5A LINE L1 -4 6293 6167 991 101 0 27 chrX 22282409 22282558 -140317372 - L1MC3 LINE L1 -215 7570 7426 717 172 52 34 chrX 22282558 22282722 -140317208 - MLT1F1 LTR MaLR -394 158 1 213 175 0 0 chrX 22282745 22282785 -140317145 - MER5A DNA MER1_type -84 105 66 2412 97 3 0 chrX 22282785 22283095 -140316835 - AluSp SINE Alu -2 311 1 2416 79 0 0 chrX 22283100 22283392 -140316538 - AluSg SINE Alu -18 292 1 1793 148 0 7 chrX 22283394 22283677 -140316253 - AluJb SINE Alu -6 306 26 438 175 0 12 chrX 22283682 22283762 -140316168 - MER5A DNA MER1_type -110 79 1 2423 65 0 0 chrX 22284589 22284879 -140315051 - AluY SINE Alu -21 290 1 648 208 8 0 chrX 22285247 22285377 -140314553 - FLAM_A SINE Alu -2 131 1 22 56 0 0 chrX 22286872 22286908 -140313022 + AT_rich Low_complexity Low_complexity 1 36 0 435 251 34 75 chrX 22288109 22288284 -140311646 + MIR3 SINE MIR 1 169 -39 1098 170 25 5 chrX 22289231 22289431 -140310499 - MER20B DNA MER1_type -2 217 14 278 276 0 87 chrX 22289479 22289606 -140310324 - MER5B DNA MER1_type -61 117 2 1180 258 64 35 chrX 22289927 22290381 -140309549 - L1MC4a LINE L1 -1870 5938 5472 1305 144 16 70 chrX 22290490 22290747 -140309183 + AluJo SINE Alu 21 263 -49 860 196 55 37 chrX 22290758 22291015 -140308915 - L1MA9 LINE L1 -21 6313 6038 2365 115 0 0 chrX 22291380 22291693 -140308237 + AluSq SINE Alu 1 313 0 1995 42 0 4 chrX 22291948 22292187 -140307743 + L1PA7 LINE L1 5912 6149 -5 256 248 71 14 chrX 22292389 22292530 -140307400 - L1 LINE L1 -3322 2824 2676 408 202 30 30 chrX 22293198 22293297 -140306633 + Charlie5 DNA MER1_type 7 105 -2507 1563 160 96 0 chrX 22293301 22293644 -140306286 + Charlie5 DNA MER1_type 2235 2610 -2 2461 80 3 3 chrX 22293651 22293962 -140305968 - AluSp SINE Alu -2 311 1 2414 88 7 0 chrX 22294069 22294375 -140305555 + AluSc SINE Alu 1 308 -1 2098 121 0 0 chrX 22294402 22294712 -140305218 - AluSx SINE Alu 0 310 1 2293 81 0 0 chrX 22295359 22295689 -140304241 - AluSx SINE Alu 0 330 1 1915 154 0 7 chrX 22296352 22296644 -140303286 + AluJb SINE Alu 3 292 -20 302 214 12 0 chrX 22296644 22296728 -140303202 + GA-rich Low_complexity Low_complexity 1 85 0 1219 204 94 28 chrX 22297195 22297514 -140302416 - MER2 DNA MER2_type 0 345 6 1220 164 23 0 chrX 22297514 22297728 -140302202 - L1MC1 LINE L1 -28 6305 6087 930 178 35 6 chrX 22297730 22297904 -140302026 + MER58A DNA MER1_type 46 224 0 2119 116 0 47 chrX 22299138 22299457 -140300473 + AluSx SINE Alu 1 304 -8 2195 105 10 13 chrX 22300477 22300783 -140299147 + AluSx SINE Alu 1 305 -7 246 228 277 0 chrX 22300861 22300962 -140298968 - MIR SINE MIR -71 191 63 377 318 35 35 chrX 22301396 22301569 -140298361 + MER5B DNA MER1_type 4 176 -2 2341 58 48 0 chrX 22302013 22302306 -140297624 - AluY SINE Alu -4 307 1 2054 128 178 8 chrX 22302483 22302849 -140297081 + MSTA LTR MaLR 1 428 0 248 258 72 21 chrX 22302849 22302946 -140296984 - MIR3 SINE MIR -42 166 65 1962 123 7 3 chrX 22303181 22303465 -140296465 - AluSx SINE Alu -7 305 21 523 292 80 1 chrX 22303758 22303958 -140295972 + MIR SINE MIR 45 258 -4 1914 104 29 14 chrX 22304705 22304984 -140294946 - AluJb SINE Alu -29 283 1 2038 126 17 7 chrX 22304990 22305284 -140294646 - AluSx SINE Alu -15 297 1 228 191 0 0 chrX 22305287 22305329 -140294601 - L2 LINE L2 -15 3298 3257 709 197 5 103 chrX 22305774 22305821 -140294109 - L1MC4 LINE L1 -96 7946 7896 189 0 0 0 chrX 22305821 22305842 -140294088 + (TC)n Simple_repeat Simple_repeat 1 21 0 709 197 5 103 chrX 22305842 22306007 -140293923 - L1MC4 LINE L1 -146 7896 7755 2342 110 0 0 chrX 22306041 22306351 -140293579 + AluSx SINE Alu 1 310 -2 365 244 78 17 chrX 22306782 22306897 -140293033 + HAL1 LINE L1 788 909 -1598 949 254 149 20 chrX 22307004 22307484 -140292446 + MLT1G LTR MaLR 7 528 -62 1875 144 7 3 chrX 22307606 22307890 -140292040 - AluJo SINE Alu -11 301 17 662 131 28 0 chrX 22308307 22308481 -140291449 + L1PA16 LINE L1 5945 6158 -8 887 86 0 0 chrX 22308890 22309006 -140290924 + AluSp/q SINE Alu 194 309 -4 2366 85 0 26 chrX 22309382 22309689 -140290241 + AluSx SINE Alu 1 299 -13 2376 113 0 0 chrX 22310378 22310688 -140289242 + AluSx SINE Alu 1 310 -2 716 189 0 8 chrX 22311124 22311251 -140288679 - FLAM_A SINE Alu -6 127 2 301 342 45 7 chrX 22311251 22311406 -140288524 - MIR SINE MIR -56 206 46 749 235 132 15 chrX 22311452 22311724 -140288206 + MER46C DNA MER2_type 1 304 -34 264 281 90 0 chrX 22311892 22311981 -140287949 - L1MC4a LINE L1 -1213 6595 6499 1676 84 0 9 chrX 22312016 22312230 -140287700 + AluSq SINE Alu 11 222 -91 313 45 0 0 chrX 22312230 22312274 -140287656 + AluSq SINE Alu 259 302 0 1828 179 126 29 chrX 22312277 22312648 -140287282 - MER31B LTR ERV1 -5 461 43 1864 123 69 0 chrX 22312648 22312925 -140287005 + AluJb SINE Alu 1 296 -16 1828 179 126 29 chrX 22312925 22312973 -140286957 - MER31B LTR ERV1 -423 43 1 21 0 0 0 chrX 22313152 22313173 -140286757 + AT_rich Low_complexity Low_complexity 1 21 0 563 158 0 0 chrX 22313200 22313282 -140286648 - Tigger5 DNA MER2_type 0 2323 2242 2149 120 7 0 chrX 22313282 22313573 -140286357 + AluSx SINE Alu 1 293 -19 258 222 0 0 chrX 22313619 22313664 -140286266 - Tigger5 DNA MER2_type -2277 46 2 2359 75 10 0 chrX 22313695 22313989 -140285941 + AluY SINE Alu 1 297 -14 439 269 136 13 chrX 22314678 22314846 -140285084 - MIR SINE MIR -50 158 4 1229 254 119 53 chrX 22316396 22316960 -140282970 - MER21B LTR ERV1 -245 618 18 631 191 30 176 chrX 22317109 22317269 -140282661 - L1MC4 LINE L1 -1 8041 7974 222 37 0 0 chrX 22317269 22317296 -140282634 + (CA)n Simple_repeat Simple_repeat 1 27 0 631 191 30 176 chrX 22317296 22317539 -140282391 - L1MC4 LINE L1 -68 7974 7697 207 0 0 0 chrX 22317544 22317567 -140282363 + (T)n Simple_repeat Simple_repeat 1 23 0 2501 71 3 0 chrX 22317747 22318055 -140281875 - AluY SINE Alu -2 309 1 2330 109 0 3 chrX 22318249 22318561 -140281369 - AluSx SINE Alu -1 311 1 471 248 59 45 chrX 22319313 22319558 -140280372 - MLT1K LTR MaLR -178 410 147 513 271 47 16 chrX 22320629 22320758 -140279172 - MIR3 SINE MIR -31 177 45 1485 179 99 43 chrX 22321086 22321410 -140278520 - MER2 DNA MER2_type -1 343 2 373 271 14 75 chrX 22322252 22322407 -140277523 - L1ME4a LINE L1 -296 5825 5683 2075 103 11 4 chrX 22322407 22322714 -140277216 + AluSx SINE Alu 1 309 0 373 271 14 75 chrX 22322714 22322770 -140277160 - L1ME4a LINE L1 -438 5683 5625 303 237 156 65 chrX 22322830 22323016 -140276914 - L1ME4a LINE L1 -2336 5472 5270 2065 92 7 11 chrX 22323573 22323846 -140276084 + AluSg SINE Alu 35 306 -4 2351 136 7 69 chrX 22327639 22327774 -140272156 - L1MB8 LINE L1 -6 6172 6030 2489 93 0 0 chrX 22327774 22328084 -140271846 - AluSg SINE Alu 0 310 1 2351 136 7 69 chrX 22328084 22328396 -140271534 - L1MB8 LINE L1 -148 6030 5753 437 265 75 7 chrX 22328397 22328544 -140271386 + MIR SINE MIR 85 241 -21 24 0 0 0 chrX 22328655 22328679 -140271251 + AT_rich Low_complexity Low_complexity 1 24 0 815 176 123 28 chrX 22328700 22328984 -140270946 + L1MC5 LINE L1 7603 7913 -48 2274 127 140 11 chrX 22328992 22329371 -140270559 - MSTA LTR MaLR 0 428 1 2250 90 3 17 chrX 22329691 22329992 -140269938 - AluSx SINE Alu -15 297 1 249 211 0 0 chrX 22330465 22330522 -140269408 + (CA)n Simple_repeat Simple_repeat 2 58 0 2435 87 0 0 chrX 22332541 22332840 -140267090 + AluSq SINE Alu 1 299 -14 1505 132 0 0 chrX 22333539 22333752 -140266178 + AluSg/x SINE Alu 84 296 -16 28 29 0 0 chrX 22334804 22334839 -140265091 + AT_rich Low_complexity Low_complexity 1 35 0 270 304 13 0 chrX 22335781 22335860 -140264070 + MER5A DNA MER1_type 38 117 -72 2842 153 47 40 chrX 22337295 22337774 -140262156 + L1MB8 LINE L1 5624 6109 -69 2365 88 3 0 chrX 22337774 22338071 -140261859 - AluSq SINE Alu -15 298 1 2842 153 47 40 chrX 22338071 22338142 -140261788 + L1MB8 LINE L1 6109 6178 0 2354 99 0 0 chrX 22338186 22338498 -140261432 - AluSx SINE Alu 0 312 1 2352 77 0 3 chrX 22339175 22339486 -140260444 + AluSx SINE Alu 1 310 0 1060 181 0 0 chrX 22339509 22339680 -140260250 + FRAM SINE Alu 1 167 -9 387 0 0 0 chrX 22339813 22339856 -140260074 + (CA)n Simple_repeat Simple_repeat 1 43 0 757 235 83 95 chrX 22340204 22340342 -140259588 + L1ME4a LINE L1 5304 5442 -679 2405 96 0 0 chrX 22340342 22340645 -140259285 - AluSx SINE Alu -9 303 1 757 235 83 95 chrX 22340645 22340886 -140259044 + L1ME4a LINE L1 5442 5675 -446 1938 168 0 0 chrX 22340886 22341184 -140258746 + AluSx SINE Alu 1 298 -14 757 235 83 95 chrX 22341184 22341412 -140258518 + L1ME4a LINE L1 5675 5904 -217 252 264 23 35 chrX 22341423 22341510 -140258420 + L1ME4a LINE L1 5961 6046 -75 373 280 54 71 chrX 22341753 22341972 -140257958 - L1MC/D LINE L1 -2012 5796 5580 2196 136 0 0 chrX 22341972 22342281 -140257649 + AluJb SINE Alu 1 309 -3 373 280 54 71 chrX 22342281 22342300 -140257630 - L1MC/D LINE L1 -2228 5580 5562 2391 98 0 13 chrX 22343599 22343915 -140256015 + AluSx SINE Alu 1 312 0 2014 175 37 14 chrX 22343984 22344338 -140255592 - MLT1A1 LTR MaLR 0 365 4 461 214 160 15 chrX 22344999 22345130 -140254800 + HAL1 LINE L1 1548 1697 -810 236 132 0 0 chrX 22345659 22345697 -140254233 + HAL1b LINE L1 746 783 -565 * 239 296 106 38 chrX 22345694 22345826 -140254104 + HAL1 LINE L1 2352 2492 -15 2326 91 3 0 chrX 22345851 22346158 -140253772 + AluSx SINE Alu 1 308 -4 382 294 59 17 chrX 22346920 22347039 -140252891 - MIR SINE MIR -82 126 3 183 222 0 0 chrX 22348269 22348314 -140251616 + A-rich Low_complexity Low_complexity 1 45 0 26 74 0 0 chrX 22349611 22349665 -140250265 + AT_rich Low_complexity Low_complexity 1 54 0 298 227 182 11 chrX 22350314 22350402 -140249528 - MIR SINE MIR -61 147 45 2160 103 3 7 chrX 22350471 22350762 -140249168 + AluSx SINE Alu 21 310 -2 190 239 299 45 chrX 22350849 22350983 -140248947 + L2 LINE L2 2917 3084 -188 476 291 130 5 chrX 22351357 22351581 -140248349 - MIR SINE MIR -13 249 15 306 0 0 0 chrX 22352025 22352059 -140247871 + (TG)n Simple_repeat Simple_repeat 1 34 0 2071 98 22 0 chrX 22352059 22352335 -140247595 - AluSx SINE Alu -30 282 1 2263 100 3 3 chrX 22352959 22353259 -140246671 + AluSx SINE Alu 1 300 -12 346 273 0 27 chrX 22353744 22353854 -140246076 - L1MC4a LINE L1 -1913 5895 5789 1206 139 31 76 chrX 22353855 22354078 -140245852 + MER46A DNA MER2_type 3 215 -21 2458 87 0 3 chrX 22354101 22354413 -140245517 - AluSx SINE Alu -1 311 1 2492 133 12 38 chrX 22355264 22355642 -140244288 + L1MB3 LINE L1 5771 6138 -45 1890 135 0 30 chrX 22355642 22355945 -140243985 + AluJo SINE Alu 1 294 -18 2492 133 12 38 chrX 22355945 22355988 -140243942 + L1MB3 LINE L1 6138 6181 -2 521 251 90 59 chrX 22356158 22356198 -140243732 - L1ME4a LINE L1 -16 6105 6068 2346 115 0 0 chrX 22356198 22356510 -140243420 + AluSx SINE Alu 1 312 0 521 251 90 59 chrX 22356510 22356724 -140243206 - L1ME4a LINE L1 -53 6068 5843 1043 123 0 0 chrX 22356732 22356878 -140243052 - AluSg/x SINE Alu -84 226 81 472 189 33 26 chrX 22356878 22357031 -140242899 + GA-rich Low_complexity Low_complexity 3 156 0 497 294 94 39 chrX 22357041 22357401 -140242529 - L1MC4 LINE L1 -565 7477 7098 303 155 10 32 chrX 22357625 22357705 -140242225 - L1ME3A LINE L1 0 6162 6082 * 444 176 219 58 chrX 22357701 22357906 -140242024 - L1ME3 LINE L1 -119 6045 5808 * 672 286 85 48 chrX 22357896 22358083 -140241847 - L1MC4a LINE L1 -891 6917 6738 2239 98 3 49 chrX 22358083 22358408 -140241522 - AluSx SINE Alu -2 310 1 672 286 85 48 chrX 22358408 22358573 -140241357 - L1MC4a LINE L1 -1070 6738 6552 835 166 26 67 chrX 22359401 22359472 -140240458 - L1MB7 LINE L1 -1 6183 6111 2113 107 20 3 chrX 22359472 22359771 -140240159 + AluSx SINE Alu 1 304 -8 835 166 26 67 chrX 22359771 22359892 -140240038 - L1MB7 LINE L1 -73 6111 5999 2373 99 0 3 chrX 22361873 22362186 -140237744 - AluSx SINE Alu 0 312 1 253 158 0 0 chrX 22362891 22362929 -140237001 + MIR SINE MIR 211 248 -14 250 189 38 0 chrX 22362892 22362945 -140236985 + L2 LINE L2 3257 3311 -2 * 841 220 137 73 chrX 22363685 22364139 -140235791 - HAL1b LINE L1 -598 750 268 258 0 30 0 chrX 22364406 22364439 -140235491 + (TTTTA)n Simple_repeat Simple_repeat 2 95 0 2101 123 3 0 chrX 22364439 22364724 -140235206 - AluSx SINE Alu -1 318 1 451 287 32 16 chrX 22366730 22366918 -140233012 - L2 LINE L2 -27 3286 3096 391 273 0 66 chrX 22371759 22371880 -140228050 + MER94 DNA DNA 7 119 -15 278 245 50 72 chrX 22371888 22372027 -140227903 + MER5A DNA MER1_type 22 157 -32 227 158 0 0 chrX 22372455 22372493 -140227437 + MIR SINE MIR 114 151 -57 2026 133 0 7 chrX 22372494 22372779 -140227151 + AluJb SINE Alu 3 285 -27 270 0 0 0 chrX 22372779 22372809 -140227121 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1052 156 89 0 chrX 22373391 22373571 -140226359 + MER3 DNA MER1_type 10 205 -4 274 239 217 0 chrX 22373933 22374025 -140225905 + MER5B DNA MER1_type 67 178 0 219 36 0 0 chrX 22375278 22375306 -140224624 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 438 20 0 0 chrX 22375613 22375664 -140224266 + (TG)n Simple_repeat Simple_repeat 1 51 0 2108 98 25 0 chrX 22375670 22375946 -140223984 - AluSg SINE Alu -27 283 1 2408 169 53 25 chrX 22376130 22376616 -140223314 + MLT1D LTR MaLR 6 505 0 2244 86 0 51 chrX 22377131 22377445 -140222485 + AluSx SINE Alu 1 298 -14 261 228 89 0 chrX 22378716 22378795 -140221135 - MIR SINE MIR -85 123 38 2377 112 0 0 chrX 22380010 22380323 -140219607 + AluSq SINE Alu 1 313 0 654 93 43 22 chrX 22380331 22380470 -140219460 + GA-rich Low_complexity Low_complexity 3 144 0 2521 84 3 0 chrX 22383693 22384002 -140215928 - AluSx SINE Alu -2 310 1 285 261 109 81 chrX 22384040 22384535 -140215395 - L2 LINE L2 -1 3312 2804 709 255 89 46 chrX 22384606 22384875 -140215055 - L2 LINE L2 -421 2893 2604 2111 120 3 3 chrX 22384875 22385175 -140214755 + AluSx SINE Alu 1 300 -12 709 255 89 46 chrX 22385175 22385254 -140214676 - L2 LINE L2 -710 2604 2530 241 111 278 0 chrX 22385262 22385316 -140214614 - L1ME1 LINE L1 -3 6163 6095 605 229 98 0 chrX 22387705 22387858 -140212072 + MIR SINE MIR 92 259 -3 2310 102 0 3 chrX 22388033 22388328 -140211602 - AluSx SINE Alu -18 294 1 622 272 60 5 chrX 22388497 22388681 -140211249 + MIR SINE MIR 66 259 -3 422 233 62 52 chrX 22388754 22388947 -140210983 + MIR3 SINE MIR 5 199 -9 28 48 0 0 chrX 22389656 22389698 -140210232 + AT_rich Low_complexity Low_complexity 1 42 0 4056 32 0 0 chrX 22389738 22390204 -140209726 + L1PA7 LINE L1 5669 6134 -20 457 248 64 0 chrX 22390590 22390731 -140209199 + MIR SINE MIR 73 222 -40 909 132 0 0 chrX 22390732 22390861 -140209069 + FLAM_A SINE Alu 3 131 -2 204 139 0 0 chrX 22390939 22390975 -140208955 + MIR SINE MIR 213 248 -14 315 341 77 57 chrX 22391388 22391616 -140208314 + L2 LINE L2 2894 3133 -139 1771 163 57 0 chrX 22391616 22391898 -140208032 + AluJb SINE Alu 1 298 -14 315 341 77 57 chrX 22391898 22392035 -140207895 + L2 LINE L2 3133 3266 -6 301 311 87 66 chrX 22393286 22393572 -140206358 + L2 LINE L2 2979 3270 -2 1432 211 109 54 chrX 22394882 22395361 -140204569 + MLT1F1 LTR MaLR 51 555 -12 379 227 193 13 chrX 22395630 22395780 -140204150 + MER5A DNA MER1_type 13 189 0 1823 149 21 3 chrX 22395868 22396150 -140203780 + AluJo SINE Alu 1 287 -25 241 385 89 0 chrX 22398055 22398224 -140201706 + L3 LINE CR1 1384 1567 -10 192 216 0 0 chrX 22399579 22399616 -140200314 - MIR SINE MIR -70 192 156 201 39 0 0 chrX 22399971 22399997 -140199933 + (TG)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chrX 22400172 22400195 -140199735 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 971 182 101 0 chrX 22400447 22400645 -140199285 - MER20 DNA MER1_type -1 218 1 189 0 0 0 chrX 22400713 22400734 -140199196 + (TTA)n Simple_repeat Simple_repeat 1 21 0 339 220 10 30 chrX 22400780 22400880 -140199050 + MIR SINE MIR 152 249 -13 763 282 13 0 chrX 22401422 22401649 -140198281 - MIR SINE MIR -11 251 22 2395 76 3 3 chrX 22402607 22402909 -140197021 - AluY SINE Alu -9 302 1 2159 121 3 0 chrX 22403249 22403539 -140196391 - AluSx SINE Alu -21 291 1 2399 112 33 0 chrX 22403586 22403951 -140195979 - L1MA6 LINE L1 -6 6294 5918 937 160 1 0 chrX 22403951 22404110 -140195820 + L1MA6 LINE L1 5781 5940 -222 962 277 88 11 chrX 22404204 22404711 -140195219 + L2 LINE L2 2450 3016 -297 1040 81 7 0 chrX 22404725 22404861 -140195069 - AluSp/q SINE Alu -7 306 170 331 259 233 0 chrX 22404864 22405057 -140194873 + L2 LINE L2 3075 3312 -1 26 50 0 0 chrX 22405085 22405125 -140194805 + AT_rich Low_complexity Low_complexity 1 40 0 861 151 0 22 chrX 22405146 22405325 -140194605 + CT-rich Low_complexity Low_complexity 2 176 0 2358 113 0 0 chrX 22405332 22405643 -140194287 - AluSx SINE Alu -1 311 1 421 264 84 39 chrX 22405821 22405976 -140193954 - MER5A DNA MER1_type -23 166 5 335 225 167 10 chrX 22406671 22406787 -140193143 + MIR SINE MIR 3 141 -67 2377 99 0 3 chrX 22407414 22407717 -140192213 + AluSx SINE Alu 1 302 -10 22 0 0 0 chrX 22407777 22407799 -140192131 + AT_rich Low_complexity Low_complexity 1 22 0 2177 137 0 0 chrX 22408126 22408425 -140191505 + AluSx SINE Alu 1 299 -13 2526 67 0 3 chrX 22408929 22409241 -140190689 - AluY SINE Alu 0 311 1 1036 153 79 10 chrX 22409241 22409444 -140190486 - L1ME1 LINE L1 -56 6110 5894 461 240 52 31 chrX 22409444 22409636 -140190294 - L2 LINE L2 -774 2540 2345 509 271 92 44 chrX 22410301 22410762 -140189168 + L1ME4a LINE L1 5106 5585 -743 478 311 156 16 chrX 22410771 22411195 -140188735 + L1ME4a LINE L1 5634 6116 -5 2349 108 0 0 chrX 22412258 22412565 -140187365 + AluSg SINE Alu 1 307 -3 1744 144 0 62 chrX 22412842 22413147 -140186783 + AluJo SINE Alu 3 288 -24 394 285 8 0 chrX 22413166 22413296 -140186634 - MIR SINE MIR -63 199 69 2166 113 3 17 chrX 22413402 22413693 -140186237 + AluSx SINE Alu 1 287 -25 23 33 0 0 chrX 22413710 22413740 -140186190 + AT_rich Low_complexity Low_complexity 1 30 0 3548 145 78 10 chrX 22413864 22414491 -140185439 + L1MB4 LINE L1 5472 6141 -39 2059 94 4 14 chrX 22414491 22414766 -140185164 + AluSx SINE Alu 1 272 -40 1227 187 27 19 chrX 22414925 22415187 -140184743 - AluJb SINE Alu -38 274 11 2472 189 92 62 chrX 22415189 22416006 -140183924 - L1MC5 LINE L1 -269 7692 6852 232 255 75 43 chrX 22416018 22416112 -140183818 - MARNA DNA Mariner -42 544 448 229 238 0 0 chrX 22416090 22416132 -140183798 - MARNA DNA Mariner -415 171 130 * 2452 102 0 0 chrX 22416370 22416683 -140183247 - AluSq SINE Alu 0 313 1 656 197 47 8 chrX 22416954 22417081 -140182849 + MER5B DNA MER1_type 43 174 -4 2663 140 34 5 chrX 22417138 22417523 -140182407 + MSTD LTR MaLR 1 396 0 505 289 16 8 chrX 22417957 22418085 -140181845 + MIR SINE MIR 22 150 -112 2718 153 21 56 chrX 22418235 22418751 -140181179 + MLT1D LTR MaLR 1 498 -7 339 206 19 136 chrX 22419116 22419271 -140180659 + L1ME LINE L1 5541 5677 -444 2068 94 87 0 chrX 22420247 22420534 -140179396 + AluSx SINE Alu 1 312 0 2361 69 6 41 chrX 22420925 22421243 -140178687 - AluSq SINE Alu -6 307 1 472 282 80 1 chrX 22421830 22421971 -140177959 - MIR SINE MIR -73 189 40 2254 87 3 20 chrX 22422119 22422418 -140177512 - AluSx SINE Alu -18 294 1 324 293 36 111 chrX 22422788 22423013 -140176917 - MIR SINE MIR -3 259 52 280 263 61 35 chrX 22423683 22423797 -140176133 - L2 LINE L2 -3 3269 3153 241 271 10 73 chrX 22424055 22424151 -140175779 + MIR SINE MIR 3 92 -170 330 248 233 16 chrX 22424731 22424860 -140175070 + MIR SINE MIR 82 238 -24 22 56 0 0 chrX 22424891 22424927 -140175003 + AT_rich Low_complexity Low_complexity 1 36 0 993 155 0 0 chrX 22424959 22425137 -140174793 - AluSg/x SINE Alu 0 311 134 186 265 44 29 chrX 22425747 22425815 -140174115 + MIR SINE MIR 40 108 -100 386 228 18 61 chrX 22426078 22426192 -140173738 - MIR SINE MIR -2 260 152 306 0 0 0 chrX 22426861 22426895 -140173035 + (TA)n Simple_repeat Simple_repeat 1 34 0 828 191 69 5 chrX 22427091 22427280 -140172650 - L1M4 LINE L1 -784 5362 5162 1440 192 23 53 chrX 22427283 22427585 -140172345 - MLT1E LTR MaLR -129 464 172 2358 107 7 0 chrX 22427593 22427903 -140172027 - AluSq SINE Alu -1 312 1 242 271 0 0 chrX 22427926 22427974 -140171956 + polypyrimidine Low_complexity Low_complexity 2 49 0 302 326 0 0 chrX 22428012 22428110 -140171820 - L1MC4a LINE L1 -1897 5911 5814 1505 246 70 38 chrX 22428761 22429260 -140170670 - LTR33 LTR ERVL -1 520 6 267 234 143 143 chrX 22429276 22429430 -140170500 - MIR SINE MIR -71 191 38 2475 49 7 0 chrX 22429466 22429751 -140170179 + AluY SINE Alu 1 287 -24 229 149 64 0 chrX 22429800 22429847 -140170083 + L1MC5 LINE L1 7712 7761 -200 1218 171 9 27 chrX 22429867 22430030 -140169900 + MER20 DNA MER1_type 1 160 -59 2533 207 82 15 chrX 22430030 22430557 -140169373 + REP3 LTR ERV 1 562 0 1218 171 9 27 chrX 22430557 22430615 -140169315 + MER20 DNA MER1_type 160 218 -1 247 187 9 131 chrX 22430615 22430722 -140169208 + L1MC5 LINE L1 7808 7901 -60 386 261 115 38 chrX 22430854 22431011 -140168919 + MIR SINE MIR 56 224 -38 2058 101 0 14 chrX 22431211 22431529 -140168401 + AluSx SINE Alu 1 314 0 1459 135 4 52 chrX 22431590 22431820 -140168110 + MER20 DNA MER1_type 1 219 0 2121 117 7 0 chrX 22432254 22432544 -140167386 + AluSx SINE Alu 1 292 -20 37 0 0 0 chrX 22432775 22432812 -140167118 + AT_rich Low_complexity Low_complexity 1 37 0 2398 97 0 0 chrX 22432860 22433169 -140166761 - AluSx SINE Alu -3 309 1 351 44 0 0 chrX 22434171 22434216 -140165714 + (TG)n Simple_repeat Simple_repeat 1 45 0 264 86 0 0 chrX 22434698 22434733 -140165197 + U2 snRNA snRNA 2 36 -152 2325 110 0 0 chrX 22435013 22435314 -140164616 + AluSx SINE Alu 1 301 -11 2245 113 0 0 chrX 22435833 22436126 -140163804 - AluSq SINE Alu -20 293 1 1070 141 18 0 chrX 22436127 22436290 -140163640 + MLT1F1 LTR MaLR 400 565 -2 1894 97 0 16 chrX 22436694 22436979 -140162951 + AluSx SINE Alu 41 321 0 279 146 0 0 chrX 22437046 22437101 -140162829 + (CAT)n Simple_repeat Simple_repeat 2 56 0 633 202 0 0 chrX 22437218 22437322 -140162608 + FRAM SINE Alu 11 114 -62 1357 176 0 0 chrX 22437322 22437526 -140162404 + AluJo SINE Alu 85 288 -24 200 121 30 0 chrX 22437787 22437820 -140162110 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 273 119 0 0 chrX 22437820 22437862 -140162068 + (CA)n Simple_repeat Simple_repeat 2 43 0 183 100 0 0 chrX 22437938 22437968 -140161962 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 290 197 28 0 chrX 22438467 22438538 -140161392 + (CATA)n Simple_repeat Simple_repeat 2 74 0 * 849 181 0 0 chrX 22438535 22438712 -140161218 + (CA)n Simple_repeat Simple_repeat 2 178 0 1945 113 4 8 chrX 22438724 22438989 -140160941 - AluSx SINE Alu -25 287 24 2167 137 0 0 chrX 22439439 22439738 -140160192 + AluSx SINE Alu 1 299 -13 7008 205 97 52 chrX 22440194 22440242 -140159688 + Charlie2a DNA MER1_type 5 49 -2813 2556 71 3 0 chrX 22440242 22440551 -140159379 - AluSg SINE Alu 0 310 1 7008 205 97 52 chrX 22440551 22441614 -140158316 + Charlie2a DNA MER1_type 49 1063 -1799 309 26 0 0 chrX 22441614 22441652 -140158278 + (CA)n Simple_repeat Simple_repeat 2 39 0 7008 205 97 52 chrX 22441652 22443017 -140156913 + Charlie2a DNA MER1_type 1063 2690 -172 2012 92 29 25 chrX 22443017 22443336 -140156594 - AluSx SINE Alu 0 320 1 7008 205 97 52 chrX 22443336 22443364 -140156566 + Charlie2a DNA MER1_type 2690 2715 -147 2077 167 78 5 chrX 22443365 22443749 -140156181 + L1MC1 LINE L1 20 431 -5995 6012 164 27 68 chrX 22443777 22444340 -140155590 + L1MC1 LINE L1 4924 5508 -1105 2315 103 0 0 chrX 22444340 22444640 -140155290 + AluSx SINE Alu 1 300 -12 6012 164 27 68 chrX 22444640 22444994 -140154936 + L1MC1 LINE L1 5508 5875 -738 296 103 0 0 chrX 22444994 22445033 -140154897 - tRNA-Cys-TGC tRNA tRNA -34 41 3 6012 164 27 68 chrX 22445033 22445832 -140154098 + L1MC1 LINE L1 5875 6607 -6 451 183 17 128 chrX 22445835 22445915 -140154015 + Charlie2a DNA MER1_type 2698 2750 -112 2054 124 0 0 chrX 22445915 22446233 -140153697 - AluSx SINE Alu 0 318 1 451 183 17 128 chrX 22446233 22446331 -140153599 + Charlie2a DNA MER1_type 2750 2857 -5 1830 232 42 32 chrX 22446344 22446566 -140153364 + MER20B DNA MER1_type 1 219 -564 1962 141 6 35 chrX 22446566 22446879 -140153051 + AluJb SINE Alu 1 304 -8 1830 232 42 32 chrX 22446879 22447130 -140152800 + MER20B DNA MER1_type 219 479 -304 2296 100 0 13 chrX 22447220 22447520 -140152410 - AluSx SINE Alu -16 296 1 1035 217 0 0 chrX 22447674 22447849 -140152081 - FAM SINE Alu 0 175 1 1084 221 82 20 chrX 22448476 22448770 -140151160 + L2 LINE L2 2997 3308 -5 1017 78 31 0 chrX 22448772 22448901 -140151029 + AluSq/x SINE Alu 1 133 -180 2389 92 3 0 chrX 22448904 22449207 -140150723 + AluSg SINE Alu 1 304 -6 2074 113 3 11 chrX 22449711 22450018 -140149912 + AluSx SINE Alu 1 305 0 798 194 145 16 chrX 22451407 22451593 -140148337 - MER63A DNA MER1_type 0 210 1 2394 88 0 0 chrX 22452291 22452586 -140147344 - AluSg SINE Alu -3 307 13 241 186 12 198 chrX 22452821 22452938 -140146992 + HAL1 LINE L1 2371 2450 -57 1919 133 7 7 chrX 22452938 22453223 -140146707 + AluSx SINE Alu 1 285 -27 241 186 12 198 chrX 22453223 22453272 -140146658 + HAL1 LINE L1 2450 2506 -1 1170 194 73 118 chrX 22453870 22454420 -140145510 + L1MC5 LINE L1 7405 7929 -32 2259 181 19 67 chrX 22454646 22454819 -140145111 + MLT1E LTR MaLR 8 188 -405 2295 98 6 16 chrX 22454819 22455135 -140144795 + AluSq SINE Alu 1 313 0 2259 181 19 67 chrX 22455135 22455441 -140144489 + MLT1E LTR MaLR 188 464 -129 1702 190 37 32 chrX 22455444 22455906 -140144024 + L1ME LINE L1 5162 5625 -541 451 217 47 54 chrX 22456105 22456234 -140143696 - MIR SINE MIR -59 203 76 23 54 0 0 chrX 22456450 22456487 -140143443 + AT_rich Low_complexity Low_complexity 1 37 0 376 209 31 110 chrX 22456488 22456679 -140143251 - MER113 DNA MER1_type? -314 207 32 2092 146 7 0 chrX 22456800 22457146 -140142784 + AluJb SINE Alu 1 348 0 858 146 15 0 chrX 22457543 22457673 -140142257 + AluSq/x SINE Alu 1 132 -180 360 55 0 55 chrX 22458040 22458095 -140141835 + MER5A DNA MER1_type 3 54 -135 1283 78 0 0 chrX 22458095 22458249 -140141681 - AluSx SINE Alu -158 154 1 1781 130 4 0 chrX 22458598 22458845 -140141085 - AluSq SINE Alu -17 296 49 336 268 52 0 chrX 22458854 22458951 -140140979 - L2 LINE L2 0 3313 3212 333 299 67 39 chrX 22459027 22459208 -140140722 + MIR SINE MIR 3 186 -67 2460 72 0 13 chrX 22459358 22459665 -140140265 - AluSx SINE Alu -9 303 1 503 254 65 41 chrX 22459723 22459892 -140140038 + MER5A DNA MER1_type 15 187 -2 637 297 89 32 chrX 22460020 22460095 -140139835 + MIR SINE MIR 3 72 -190 1057 171 44 0 chrX 22460095 22460276 -140139654 + MER5A DNA MER1_type 1 189 0 637 297 89 32 chrX 22460276 22460446 -140139484 + MIR SINE MIR 72 262 0 2257 99 0 0 chrX 22460555 22460874 -140139056 - AluSx SINE Alu 0 319 1 472 282 80 1 chrX 22461461 22461602 -140138328 - MIR SINE MIR -73 189 40 2264 87 3 20 chrX 22461750 22462050 -140137880 - AluSx SINE Alu -17 295 1 324 293 36 111 chrX 22462420 22462645 -140137285 - MIR SINE MIR -3 259 52 280 263 61 35 chrX 22463315 22463429 -140136501 - L2 LINE L2 -3 3269 3153 241 271 10 73 chrX 22463687 22463783 -140136147 + MIR SINE MIR 3 92 -170 330 248 233 16 chrX 22464363 22464492 -140135438 + MIR SINE MIR 82 238 -24 22 56 0 0 chrX 22464523 22464559 -140135371 + AT_rich Low_complexity Low_complexity 1 36 0 1015 149 0 0 chrX 22464591 22464769 -140135161 - AluSg/x SINE Alu 0 311 134 186 265 44 29 chrX 22465379 22465447 -140134483 + MIR SINE MIR 40 108 -100 386 228 18 61 chrX 22465710 22465824 -140134106 - MIR SINE MIR -2 260 152 411 21 0 0 chrX 22466489 22466537 -140133393 + (TA)n Simple_repeat Simple_repeat 1 48 0 309 30 0 0 chrX 22466537 22466570 -140133360 - L1PA6 LINE L1 -18 6136 6104 2629 47 7 0 chrX 22467105 22467406 -140132524 - AluY SINE Alu -8 303 1 267 234 143 143 chrX 22467442 22467596 -140132334 + MIR SINE MIR 38 191 -71 1505 246 70 38 chrX 22467612 22468111 -140131819 + LTR33 LTR ERVL 6 520 -1 242 271 0 0 chrX 22468898 22468946 -140130984 + polypurine Low_complexity Low_complexity 2 49 0 2408 109 0 0 chrX 22468969 22469282 -140130648 + AluSq SINE Alu 1 313 0 1255 135 14 34 chrX 22469293 22469501 -140130429 - MER3 DNA MER1_type -5 204 1 2863 246 47 53 chrX 22469932 22470474 -140129456 - L2 LINE L2 -7 3306 2762 1861 108 35 0 chrX 22470474 22470733 -140129197 - AluSx SINE Alu -15 297 30 2863 246 47 53 chrX 22470733 22471345 -140128585 - L2 LINE L2 -551 2762 2142 514 273 15 8 chrX 22471380 22471512 -140128418 + L2 LINE L2 3181 3313 0 21 0 0 0 chrX 22471569 22471590 -140128340 + AT_rich Low_complexity Low_complexity 1 21 0 1538 253 145 37 chrX 22471606 22472338 -140127592 - L1ME4a LINE L1 -3 6118 5308 2000 137 26 7 chrX 22472421 22472727 -140127203 + AluJb SINE Alu 1 312 0 528 221 12 23 chrX 22473005 22473180 -140126750 + HsTC2 DNA Tc2 2 1894 -4 21 57 0 0 chrX 22473344 22473379 -140126551 + AT_rich Low_complexity Low_complexity 1 35 0 2433 81 0 0 chrX 22473422 22473731 -140126199 - AluY SINE Alu -2 309 1 2369 67 0 0 chrX 22474052 22474358 -140125572 - AluY SINE Alu 0 306 1 1201 194 0 28 chrX 22474603 22474820 -140125110 + MER6A DNA MER2_type 4 214 -391 1493 75 5 0 chrX 22474820 22475006 -140124924 + AluSx SINE Alu 1 187 -125 605 67 27 0 chrX 22475006 22475081 -140124849 + AluSx SINE Alu 218 294 -16 1549 132 23 12 chrX 22475083 22475340 -140124590 + MER6A DNA MER2_type 204 463 -142 2957 67 0 97 chrX 22475782 22476064 -140123866 + L1MA4A LINE L1 5882 6190 -113 2431 92 0 0 chrX 22476064 22476370 -140123560 + AluSx SINE Alu 1 306 -6 2957 67 0 97 chrX 22476370 22476528 -140123402 + L1MA4A LINE L1 6190 6278 -25 2104 102 3 3 chrX 22476528 22476811 -140123119 + AluSx SINE Alu 1 283 -29 2957 67 0 97 chrX 22476811 22476831 -140123099 + L1MA4A LINE L1 6278 6298 -5 1053 151 0 0 chrX 22476839 22476998 -140122932 + MER6A DNA MER2_type 447 605 0 * 4713 174 85 52 chrX 22476998 22477060 -140122870 + Charlie7 DNA MER1_type 92 150 -2462 1424 193 54 37 chrX 22477060 22477355 -140122575 - AluJo SINE Alu -12 300 1 4713 174 85 52 chrX 22477355 22477602 -140122328 + Charlie7 DNA MER1_type 150 388 -2224 2238 97 3 0 chrX 22477602 22477917 -140122013 + AluSg SINE Alu 1 316 0 4713 174 85 52 chrX 22477917 22478746 -140121184 + Charlie7 DNA MER1_type 388 1271 -1341 296 237 79 86 chrX 22479417 22479467 -140120463 - L1ME3A LINE L1 -1 6169 6120 2158 116 7 0 chrX 22479467 22479760 -140120170 + AluSx SINE Alu 1 295 -17 296 237 79 86 chrX 22479760 22479848 -140120082 - L1ME3A LINE L1 -50 6120 6032 1513 236 42 20 chrX 22479861 22480243 -140119687 - L1HS LINE L1 -190 5980 5600 2205 90 3 7 chrX 22480496 22480628 -140119302 + AluSx SINE Alu 1 132 -180 189 0 0 0 chrX 22480628 22480649 -140119281 + (TA)n Simple_repeat Simple_repeat 1 21 0 2205 90 3 7 chrX 22480649 22480804 -140119126 + AluSx SINE Alu 132 287 -25 384 292 123 19 chrX 22480824 22480978 -140118952 + MIR SINE MIR 87 256 -6 283 298 68 16 chrX 22482347 22482497 -140117433 - MIR3 SINE MIR -17 191 28 519 288 84 39 chrX 22482795 22483104 -140116826 + L2 LINE L2 1381 1703 -1611 284 298 12 0 chrX 22483131 22483215 -140116715 + GA-rich Low_complexity Low_complexity 1 85 0 344 315 152 4 chrX 22483293 22483550 -140116380 + L2 LINE L2 1804 2098 -1216 444 252 146 56 chrX 22483834 22484075 -140115855 + L2 LINE L2 2186 2404 -910 2265 102 3 0 chrX 22484075 22484369 -140115561 - AluSx SINE Alu -17 295 1 444 252 146 56 chrX 22484369 22484539 -140115391 + L2 LINE L2 2404 2634 -680 418 271 57 0 chrX 22484539 22484679 -140115251 - MER112 DNA MER1_type -85 175 28 1217 152 163 4 chrX 22484728 22484985 -140114945 + MER33 DNA MER1_type 27 324 0 396 0 0 0 chrX 22487586 22487630 -140112300 + (CA)n Simple_repeat Simple_repeat 2 45 0 517 152 0 20 chrX 22487723 22487822 -140112108 + MIR SINE MIR 48 144 -118 2077 120 3 13 chrX 22487919 22488218 -140111712 + AluSx SINE Alu 1 296 -16 232 143 0 0 chrX 22488496 22488538 -140111392 - LTR66 LTR ERVL -171 439 398 689 161 0 51 chrX 22488555 22488673 -140111257 + FLAM_A SINE Alu 6 117 -25 192 40 0 0 chrX 22489615 22489640 -140110290 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 186 148 111 111 chrX 22491318 22491372 -140108558 + L3 LINE CR1 1084 1137 -440 396 274 38 0 chrX 22491436 22491542 -140108388 - MIR SINE MIR -22 240 131 234 0 0 0 chrX 22491590 22491616 -140108314 + (T)n Simple_repeat Simple_repeat 1 26 0 596 189 53 79 chrX 22491748 22491938 -140107992 + MER5A DNA MER1_type 2 186 -3 * 713 204 37 37 chrX 22491790 22491952 -140107978 - MER5A DNA MER1_type -24 165 4 547 196 87 65 chrX 22492442 22492626 -140107304 + MER5A DNA MER1_type 1 188 -1 1887 158 3 7 chrX 22493458 22493762 -140106168 - AluJb SINE Alu -9 303 1 1236 204 109 69 chrX 22493846 22494316 -140105614 + L1ME4a LINE L1 5575 6025 -96 2284 91 3 3 chrX 22494316 22494614 -140105316 + AluSc SINE Alu 1 298 -11 378 0 0 0 chrX 22494614 22494656 -140105274 + (TA)n Simple_repeat Simple_repeat 2 43 0 1236 204 109 69 chrX 22494656 22494676 -140105254 + L1ME4a LINE L1 6025 6043 -78 1851 127 58 0 chrX 22494676 22494951 -140104979 - AluJb SINE Alu -16 296 6 1236 204 109 69 chrX 22494951 22494983 -140104947 + L1ME4a LINE L1 6043 6120 -1 300 301 102 12 chrX 22495331 22495368 -140104562 - MIR SINE MIR -14 248 216 601 44 0 121 chrX 22495368 22495418 -140104512 - MADE1 DNA Mariner 0 80 44 2334 95 0 0 chrX 22495418 22495714 -140104216 + AluSq SINE Alu 1 296 -17 601 44 0 121 chrX 22495714 22495754 -140104176 - MADE1 DNA Mariner -36 44 1 300 301 102 12 chrX 22495754 22495882 -140104048 - MIR SINE MIR -46 216 68 2141 107 3 13 chrX 22495943 22496242 -140103688 + AluSx SINE Alu 1 296 -16 622 77 13 0 chrX 22496275 22496353 -140103577 - MADE1 DNA Mariner -1 79 1 1644 211 61 41 chrX 22496446 22496858 -140103072 + LTR16C LTR ERVL 64 483 -8 2161 118 0 20 chrX 22496894 22497199 -140102731 - AluSx SINE Alu -13 299 1 2447 70 0 19 chrX 22497234 22497548 -140102382 - AluSg SINE Alu -2 308 1 1889 156 10 7 chrX 22497610 22497918 -140102012 + AluJb SINE Alu 1 309 -3 392 314 48 18 chrX 22498234 22498411 -140101519 - MIR3 SINE MIR -69 139 2 2176 124 0 3 chrX 22498642 22498940 -140100990 + AluSx SINE Alu 1 297 -15 1968 72 7 47 chrX 22499017 22499295 -140100635 + AluSq SINE Alu 41 307 -6 2068 94 87 0 chrX 22499686 22499973 -140099957 - AluSx SINE Alu 0 312 1 339 206 19 136 chrX 22500949 22501104 -140098826 - L1ME LINE L1 -444 5677 5541 2718 153 21 56 chrX 22501469 22501985 -140097945 - MLT1D LTR MaLR -7 498 1 505 289 16 8 chrX 22502135 22502263 -140097667 - MIR SINE MIR -112 150 22 2663 140 34 5 chrX 22502697 22503082 -140096848 - MSTD LTR MaLR 0 396 1 656 197 47 8 chrX 22503139 22503266 -140096664 - MER5B DNA MER1_type -4 174 43 2452 102 0 0 chrX 22503537 22503850 -140096080 + AluSq SINE Alu 1 313 0 229 227 0 0 chrX 22504088 22504132 -140095798 - MARNA DNA Mariner -131 455 412 * 232 255 75 43 chrX 22504108 22504202 -140095728 + MARNA DNA Mariner 448 544 -42 2584 185 90 75 chrX 22504214 22505033 -140094897 + L1MC5 LINE L1 6852 7689 -272 1665 170 7 18 chrX 22505033 22505335 -140094595 + AluJb SINE Alu 11 309 0 2584 185 90 75 chrX 22505335 22505410 -140094520 + L1MC5 LINE L1 7689 7761 -200 1218 171 9 27 chrX 22505430 22505593 -140094337 + MER20 DNA MER1_type 1 160 -59 2533 207 82 15 chrX 22505593 22506120 -140093810 + REP3 LTR ERV 1 562 0 1218 171 9 27 chrX 22506120 22506178 -140093752 + MER20 DNA MER1_type 160 218 -1 247 187 9 131 chrX 22506178 22506285 -140093645 + L1MC5 LINE L1 7808 7901 -60 386 261 115 38 chrX 22506417 22506574 -140093356 + MIR SINE MIR 56 224 -38 2058 101 0 14 chrX 22506774 22507092 -140092838 + AluSx SINE Alu 1 314 0 1459 135 4 52 chrX 22507153 22507383 -140092547 + MER20 DNA MER1_type 1 219 0 2121 117 7 0 chrX 22507817 22508107 -140091823 + AluSx SINE Alu 1 292 -20 37 0 0 0 chrX 22508338 22508375 -140091555 + AT_rich Low_complexity Low_complexity 1 37 0 2398 97 0 0 chrX 22508423 22508732 -140091198 - AluSx SINE Alu -3 309 1 351 44 0 0 chrX 22509734 22509779 -140090151 + (TG)n Simple_repeat Simple_repeat 1 45 0 264 86 0 0 chrX 22510261 22510296 -140089634 + U2 snRNA snRNA 2 36 -152 2325 110 0 0 chrX 22510576 22510877 -140089053 + AluSx SINE Alu 1 301 -11 260 245 0 0 chrX 22511636 22511689 -140088241 - L2 LINE L2 -2 3311 3259 1024 134 5 106 chrX 22512285 22512385 -140087545 + MER3 DNA MER1_type 15 83 -126 2179 88 60 0 chrX 22512385 22512668 -140087262 + AluSx SINE Alu 10 309 -3 1024 134 5 106 chrX 22512668 22512784 -140087146 + MER3 DNA MER1_type 83 209 0 311 207 184 23 chrX 22512810 22512897 -140087033 + MIR SINE MIR 48 148 -114 1853 182 0 3 chrX 22512904 22513212 -140086718 + AluJo SINE Alu 5 311 -1 489 76 0 0 chrX 22513214 22513280 -140086650 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 228 277 15 0 chrX 22513579 22513644 -140086286 - Tigger8 DNA MER2_type -591 75 10 2025 133 0 7 chrX 22514101 22514394 -140085536 - AluSx SINE Alu -21 291 1 291 85 0 0 chrX 22514446 22514493 -140085437 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 1811 99 0 0 chrX 22515068 22515300 -140084630 + AluSq SINE Alu 61 292 -21 1721 234 60 6 chrX 22516838 22517387 -140082543 + MLT2E LTR ERVL 1 626 -2 2141 118 7 0 chrX 22517649 22517945 -140081985 - AluSx SINE Alu -14 298 1 2424 93 3 0 chrX 22517967 22518278 -140081652 - AluSp SINE Alu -1 312 1 1342 139 18 0 chrX 22519047 22519270 -140080660 + L1MA5 LINE L1 6072 6298 -2 1648 152 5 3 chrX 22519283 22519669 -140080261 + L1MA4A LINE L1 5833 6280 -23 21 0 0 0 chrX 22519669 22519690 -140080240 + AT_rich Low_complexity Low_complexity 1 21 0 244 238 62 100 chrX 22519797 22519877 -140080053 - MER91A DNA MER1_type -3 193 117 697 276 133 36 chrX 22520159 22520460 -140079470 + MER115 DNA AcHobo 36 365 -328 819 192 132 27 chrX 22520486 22520585 -140079345 + MER115 DNA AcHobo 450 537 -156 456 19 0 0 chrX 22520585 22520638 -140079292 + (TG)n Simple_repeat Simple_repeat 2 54 0 819 192 132 27 chrX 22520638 22520757 -140079173 + MER115 DNA AcHobo 537 691 -2 2384 110 0 0 chrX 22520996 22521306 -140078624 + AluSx SINE Alu 1 310 -2 2358 117 42 28 chrX 22521812 22522171 -140077759 - THE1B LTR MaLR 0 364 1 778 222 98 10 chrX 22522251 22522445 -140077485 + L2 LINE L2 3103 3313 0 936 168 58 0 chrX 22523281 22523436 -140076494 + MLT1A1 LTR MaLR 202 365 0 2582 198 62 63 chrX 22523438 22523788 -140076142 + L1MB2 LINE L1 4563 4912 -1234 2887 148 17 23 chrX 22523788 22524145 -140075785 + L1MB2 LINE L1 5698 6053 -118 2310 55 3 3 chrX 22524145 22524436 -140075494 + AluY SINE Alu 1 291 -20 2887 148 17 23 chrX 22524436 22524552 -140075378 + L1MB2 LINE L1 6053 6168 -3 2582 198 62 63 chrX 22524552 22525006 -140074924 + L1MB2 LINE L1 4912 5366 -780 2055 128 3 3 chrX 22525277 22525574 -140074356 - AluSq SINE Alu -16 297 1 24 0 0 0 chrX 22525783 22525807 -140074123 + AT_rich Low_complexity Low_complexity 1 24 0 1743 227 26 40 chrX 22525885 22526259 -140073671 + L1MCb LINE L1 3 371 -5674 2482 138 5 22 chrX 22526259 22526628 -140073302 - THE1B LTR MaLR -1 363 1 1743 227 26 40 chrX 22526628 22526706 -140073224 + L1MCb LINE L1 371 449 -5596 2243 114 0 3 chrX 22526718 22527016 -140072914 + AluSq SINE Alu 1 297 -16 336 200 143 0 chrX 22527088 22527158 -140072772 + L1MCb LINE L1 486 565 -5480 1848 178 22 38 chrX 22527235 22527680 -140072250 + L1MCb LINE L1 1367 1804 -4760 2093 161 159 13 chrX 22528280 22528815 -140071115 + L1MCb LINE L1 1879 2491 -4073 2154 123 13 0 chrX 22528816 22529124 -140070806 + AluSq SINE Alu 1 312 -1 1674 189 0 34 chrX 22529189 22529514 -140070416 + AluJo SINE Alu 2 316 0 1355 206 45 14 chrX 22529716 22530003 -140069927 + AluJo SINE Alu 1 296 -16 2130 114 24 0 chrX 22530103 22530392 -140069538 - AluSx SINE Alu -16 296 1 475 183 43 0 chrX 22531004 22531097 -140068833 + L2 LINE L2 3215 3311 -2 2407 86 0 10 chrX 22531157 22531460 -140068470 + AluSx SINE Alu 1 300 -12 906 231 53 64 chrX 22531597 22531879 -140068051 - MLT1J LTR MaLR -9 502 224 2517 91 36 8 chrX 22531916 22532246 -140067684 - L1PA15 LINE L1 0 6165 5823 2241 108 0 13 chrX 22532246 22532553 -140067377 - AluSx SINE Alu -7 305 3 2517 91 36 8 chrX 22532553 22532583 -140067347 - L1PA15 LINE L1 -342 5823 5795 236 139 163 0 chrX 22532583 22532626 -140067304 + L1P4 LINE L1 5563 5612 -562 428 288 127 24 chrX 22532847 22533187 -140066743 - L1ME4a LINE L1 -273 5848 5474 750 156 71 21 chrX 22533356 22533497 -140066433 + MER69B DNA AcHobo 1 148 -1078 3224 88 9 93 chrX 22533633 22533971 -140065959 - L1PB1 LINE L1 -39 6112 5836 351 0 0 0 chrX 22533971 22534010 -140065920 + (TG)n Simple_repeat Simple_repeat 1 39 0 3224 88 9 93 chrX 22534010 22534217 -140065713 - L1PB1 LINE L1 -315 5836 5613 266 185 111 0 chrX 22534217 22534271 -140065659 + MER69B DNA AcHobo 124 183 -1043 620 179 154 43 chrX 22534273 22534435 -140065495 + MER63A DNA MER1_type 3 182 -28 * 1901 229 63 91 chrX 22534434 22534629 -140065301 + MER69B DNA AcHobo 182 381 -2145 2244 105 0 0 chrX 22534629 22534923 -140065007 - AluSg SINE Alu -16 294 1 1901 229 63 91 chrX 22534923 22535049 -140064881 + MER69B DNA AcHobo 381 509 -2017 2340 92 0 0 chrX 22535049 22535342 -140064588 + AluSx SINE Alu 1 293 -19 1901 229 63 91 chrX 22535342 22535381 -140064549 + MER69B DNA AcHobo 509 548 -1978 2400 155 3 11 chrX 22535381 22535749 -140064181 - MLT1A1 LTR MaLR 0 365 1 1901 229 63 91 chrX 22535749 22536268 -140063662 + MER69B DNA AcHobo 548 1039 -187 851 252 21 13 chrX 22536329 22536563 -140063367 - L1MC4 LINE L1 -454 7588 7353 23 33 0 0 chrX 22536934 22536964 -140062966 + GC_rich Low_complexity Low_complexity 1 30 0 2091 119 13 3 chrX 22538604 22538907 -140061023 - AluSq SINE Alu -7 306 1 303 372 44 0 chrX 22538951 22539064 -140060866 - L2 LINE L2 0 3272 3155 267 188 87 0 chrX 22539244 22539313 -140060617 - MIR SINE MIR -71 191 117 917 283 111 34 chrX 22539315 22539728 -140060202 - LTR67 LTR ERVL 0 557 113 301 340 54 74 chrX 22539925 22540331 -140059599 + L2 LINE L2 2828 3225 -47 779 292 38 8 chrX 22540595 22540835 -140059095 - Tigger8 DNA MER2_type -5 661 415 288 328 52 9 chrX 22540956 22541072 -140058858 - Tigger8 DNA MER2_type -462 204 84 2356 101 0 0 chrX 22541072 22541368 -140058562 - AluSx SINE Alu -13 299 4 221 328 55 78 chrX 22541701 22541774 -140058156 + L2 LINE L2 3139 3209 -63 2328 97 3 0 chrX 22541774 22542082 -140057848 - AluSq SINE Alu -4 309 1 221 328 55 78 chrX 22542082 22542136 -140057794 + L2 LINE L2 3209 3263 -9 546 254 111 21 chrX 22543342 22543531 -140056399 - MIR SINE MIR -42 220 15 2270 112 0 0 chrX 22543642 22543938 -140055992 - AluSx SINE Alu -16 296 1 2342 103 0 0 chrX 22544564 22544865 -140055065 - AluSq SINE Alu -12 301 1 2193 97 24 0 chrX 22544894 22545183 -140054747 - AluSx SINE Alu -16 296 1 2219 93 3 27 chrX 22545196 22545497 -140054433 - AluSx SINE Alu -17 295 2 562 279 36 12 chrX 22546778 22546943 -140052987 + MIR SINE MIR 24 192 -70 610 246 66 22 chrX 22548198 22548243 -140051687 + MER58C DNA MER1_type 3 45 -2375 964 138 0 7 chrX 22548243 22548388 -140051542 - L1MB8 LINE L1 -9 6169 6026 610 246 66 22 chrX 22548388 22548525 -140051405 + MER58C DNA MER1_type 45 193 -22 2695 229 194 58 chrX 22548675 22550041 -140049889 - L1MC4a LINE L1 -134 7674 6123 368 322 8 8 chrX 22550307 22550425 -140049505 + MIR3 SINE MIR 42 159 -49 203 333 176 0 chrX 22550421 22550523 -140049407 + L2 LINE L2 3151 3270 -2 * 1976 82 26 30 chrX 22550841 22551110 -140048820 + AluSq SINE Alu 1 268 -45 6544 74 15 71 chrX 22551508 22553173 -140046757 - SVA Other Other -518 1386 393 2846 137 71 25 chrX 22553256 22553780 -140046150 - L1MB5 LINE L1 0 6174 5627 2425 72 3 0 chrX 22553794 22554087 -140045843 - AluSg SINE Alu -10 300 7 1823 174 0 3 chrX 22554102 22554413 -140045517 - AluJb SINE Alu -2 310 1 1900 244 147 49 chrX 22554414 22554733 -140045197 - L1MC4a LINE L1 -743 5403 5117 2359 88 7 0 chrX 22554733 22555027 -140044903 - AluSq SINE Alu -17 296 1 1900 244 147 49 chrX 22555027 22555210 -140044720 - L1MC4a LINE L1 -1029 5117 4953 2234 108 0 7 chrX 22555210 22555515 -140044415 - AluSg SINE Alu -7 303 1 1900 244 147 49 chrX 22555515 22556077 -140043853 - L1MC4a LINE L1 -1193 4953 4768 2443 76 0 25 chrX 22556077 22556392 -140043538 - AluSg SINE Alu -3 307 1 1900 244 147 49 chrX 22556392 22556440 -140043490 - L1MC4a LINE L1 -1378 4768 4726 2161 106 7 7 chrX 22556541 22556844 -140043086 - AluSc SINE Alu -6 303 1 2151 79 4 0 chrX 22557283 22557569 -140042361 - AluY SINE Alu 0 303 17 1975 113 10 23 chrX 22558423 22558723 -140041207 - AluSg SINE Alu -14 296 1 243 250 0 0 chrX 22560948 22561020 -140038910 + T-rich Low_complexity Low_complexity 1 72 0 714 255 170 75 chrX 22561288 22562055 -140037875 - L2 LINE L2 -5 3308 2449 278 350 184 0 chrX 22562850 22563067 -140036863 + L2 LINE L2 2397 2653 -661 440 279 98 83 chrX 22563307 22563572 -140036358 + L2 LINE L2 2995 3263 -9 1055 181 29 5 chrX 22563920 22564124 -140035806 - MER3 DNA MER1_type 0 209 1 183 262 0 24 chrX 22564332 22564374 -140035556 - L3 LINE CR1 -13 1564 1524 * 258 280 120 0 chrX 22564342 22564417 -140035513 - MIR3 SINE MIR -26 182 99 916 147 0 0 chrX 22565853 22565982 -140033948 - FLAM_C SINE Alu -4 129 1 2259 117 0 0 chrX 22566809 22567108 -140032822 - AluSg SINE Alu -11 299 1 714 268 64 56 chrX 22568219 22568321 -140031609 + MIR SINE MIR 11 111 -151 2411 85 0 10 chrX 22568321 22568627 -140031303 - AluSx SINE Alu -9 303 1 714 268 64 56 chrX 22568627 22568774 -140031156 + MIR SINE MIR 111 262 0 22 0 0 0 chrX 22568852 22568874 -140031056 + AT_rich Low_complexity Low_complexity 1 22 0 245 290 0 14 chrX 22570648 22570717 -140029213 - Charlie4 DNA MER1_type -11 1950 1883 1077 285 60 54 chrX 22571282 22571821 -140028109 - L1MC5 LINE L1 -35 7926 7381 925 190 112 34 chrX 22571821 22572026 -140027904 + MER58A DNA MER1_type 1 221 -3 1077 285 60 54 chrX 22572026 22572171 -140027759 - L1MC5 LINE L1 -580 7381 7238 1241 152 8 89 chrX 22572295 22572532 -140027398 - MER20 DNA MER1_type -1 218 1 479 255 60 46 chrX 22572549 22572765 -140027165 - L1MC5 LINE L1 -742 7219 7001 21 0 0 0 chrX 22572796 22572817 -140027113 + AT_rich Low_complexity Low_complexity 1 21 0 2003 143 27 0 chrX 22572932 22573225 -140026705 - AluSx SINE Alu -10 302 2 1899 204 60 79 chrX 22573324 22573359 -140026571 + L1MC5 LINE L1 6683 6717 -1244 2285 111 0 22 chrX 22573359 22573675 -140026255 - AluSx SINE Alu -3 309 1 1899 204 60 79 chrX 22573675 22574300 -140025630 + L1MC5 LINE L1 6717 7331 -630 204 194 0 60 chrX 22574521 22574588 -140025342 + (CGGGG)n Simple_repeat Simple_repeat 1 63 0 896 296 165 40 chrX 22574762 22575488 -140024442 - L2 LINE L2 -652 2662 1846 330 257 119 18 chrX 22575490 22575599 -140024331 - MIR SINE MIR -93 169 50 456 326 70 5 chrX 22575678 22575865 -140024065 + MIR SINE MIR 59 257 -5 836 242 109 79 chrX 22576400 22576913 -140023017 + L2 LINE L2 2502 3036 -277 2103 107 10 13 chrX 22576929 22577238 -140022692 - AluSc SINE Alu -1 308 1 2151 79 4 0 chrX 22577678 22577964 -140021966 - AluY SINE Alu 0 303 17 1975 113 10 23 chrX 22578818 22579118 -140020812 - AluSg SINE Alu -14 296 1 243 250 0 0 chrX 22581342 22581414 -140018516 + T-rich Low_complexity Low_complexity 1 72 0 714 255 170 75 chrX 22581682 22582449 -140017481 - L2 LINE L2 -5 3308 2449 278 350 184 0 chrX 22583244 22583461 -140016469 + L2 LINE L2 2397 2653 -661 256 293 35 106 chrX 22583701 22583899 -140016031 + L2 LINE L2 2995 3178 -94 288 267 22 18 chrX 22584053 22584343 -140015587 + G-rich Low_complexity Low_complexity 1 291 0 281 253 0 22 chrX 22584358 22584536 -140015394 + G-rich Low_complexity Low_complexity 4 177 0 1824 165 3 13 chrX 22586586 22586901 -140013029 + AluJb SINE Alu 1 312 0 246 353 154 22 chrX 22588573 22588930 -140011000 - L2 LINE L2 -348 2966 2563 3143 215 106 23 chrX 22590383 22591999 -140007931 + L1MD2 LINE L1 4413 6098 -68 848 211 168 29 chrX 22592069 22592278 -140007652 - MER8 DNA MER2_type 0 239 2 487 204 51 0 chrX 22592626 22592724 -140007206 + L1ME1 LINE L1 6046 6148 -18 2470 119 10 135 chrX 22593133 22593628 -140006302 - Tigger2a DNA MER2_type 0 434 2 1853 161 0 0 chrX 22593872 22594163 -140005767 - AluJo SINE Alu -21 291 1 321 287 40 67 chrX 22594260 22594410 -140005520 - L2 LINE L2 0 3313 3168 30 45 0 0 chrX 22594602 22594646 -140005284 + AT_rich Low_complexity Low_complexity 1 44 0 550 345 143 19 chrX 22594741 22595153 -140004777 - L2 LINE L2 -561 2753 2291 1981 114 0 18 chrX 22597648 22597921 -140002009 + AluSx SINE Alu 1 268 -44 606 244 111 32 chrX 22598545 22599080 -140000850 - L1ME LINE L1 -652 5514 4940 1099 205 56 14 chrX 22599124 22599339 -140000591 + MER58A DNA MER1_type 1 224 0 2363 84 0 3 chrX 22599478 22599775 -140000155 + AluSx SINE Alu 1 296 -16 233 182 0 55 chrX 22600571 22600582 -139999348 - MER46A DNA MER2_type -81 155 148 328 118 137 0 chrX 22600582 22600633 -139999297 + MER46B DNA MER2_type 1 58 -303 2483 70 0 0 chrX 22600633 22600935 -139998995 - AluY SINE Alu -9 302 1 23 33 0 0 chrX 22602130 22602160 -139997770 + GC_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chrX 22602428 22602454 -139997476 + GC_rich Low_complexity Low_complexity 1 26 0 5136 107 36 6 chrX 22602552 22602923 -139997007 + L1PA16 LINE L1 5407 5765 -401 396 0 0 0 chrX 22602923 22602967 -139996963 + (CA)n Simple_repeat Simple_repeat 2 45 0 5136 107 36 6 chrX 22602967 22603321 -139996609 + L1PA16 LINE L1 5765 6154 -12 194 301 60 0 chrX 22603520 22603603 -139996327 + L2 LINE L2 2566 2653 -661 457 291 47 20 chrX 22604114 22604262 -139995668 + MIR SINE MIR 41 192 -70 21 36 0 0 chrX 22605312 22605340 -139994590 + AT_rich Low_complexity Low_complexity 1 28 0 643 278 40 10 chrX 22606843 22607041 -139992889 - Tigger8 DNA MER2_type -48 618 415 288 328 52 9 chrX 22607162 22607278 -139992652 - Tigger8 DNA MER2_type -462 204 84 2166 105 0 10 chrX 22607278 22607572 -139992358 - AluSx SINE Alu -13 299 9 2342 103 0 0 chrX 22608206 22608507 -139991423 - AluSq SINE Alu -12 301 1 2193 97 24 0 chrX 22608536 22608825 -139991105 - AluSx SINE Alu -16 296 1 2144 103 3 27 chrX 22608838 22609139 -139990791 - AluSx SINE Alu -17 295 2 354 23 0 0 chrX 22609547 22609590 -139990340 + (T)n Simple_repeat Simple_repeat 1 43 0 322 177 39 50 chrX 22609590 22609771 -139990159 + (GTGTG)n Simple_repeat Simple_repeat 2 180 0 28 68 0 0 chrX 22609881 22609925 -139990005 + GC_rich Low_complexity Low_complexity 1 44 0 486 0 0 0 chrX 22611110 22611164 -139988766 + (T)n Simple_repeat Simple_repeat 1 54 0 218 284 0 0 chrX 22611238 22611305 -139988625 + MIR SINE MIR 110 176 -86 * 234 355 9 28 chrX 22611302 22611409 -139988521 - L2 LINE L2 0 3313 3209 1095 278 48 16 chrX 22611693 22612064 -139987866 + L1MC4a LINE L1 5548 5930 -1878 622 289 105 15 chrX 22613187 22613512 -139986418 - MLT1L LTR MaLR -118 497 144 288 170 19 0 chrX 22613582 22613635 -139986295 + MER5B DNA MER1_type 125 178 0 409 274 149 25 chrX 22614007 22614208 -139985722 + MIR SINE MIR 6 231 -31 23 78 0 0 chrX 22614884 22614935 -139984995 + GC_rich Low_complexity Low_complexity 1 51 0 445 369 0 0 chrX 22615297 22615476 -139984454 + G-rich Low_complexity Low_complexity 1 179 0 261 313 0 0 chrX 22615501 22615648 -139984282 + G-rich Low_complexity Low_complexity 1 147 0 238 178 0 0 chrX 22615668 22615713 -139984217 + G-rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 22616142 22616163 -139983767 + AT_rich Low_complexity Low_complexity 1 21 0 1315 247 80 4 chrX 22617804 22618250 -139981680 - L1ME LINE L1 -463 5707 5227 2297 110 75 0 chrX 22618250 22618585 -139981345 - MER46B DNA MER2_type 0 236 2 1315 247 80 4 chrX 22618585 22618619 -139981311 - L1ME LINE L1 -943 5227 5197 319 172 17 17 chrX 22618691 22618749 -139981181 - L1ME2 LINE L1 -110 6054 5997 259 246 53 0 chrX 22619687 22619744 -139980186 - L2 LINE L2 -4 3268 3209 192 276 152 62 chrX 22620144 22620289 -139979641 - MIR SINE MIR -36 226 69 194 313 157 0 chrX 22620987 22621070 -139978860 + L3 LINE CR1 1179 1274 -303 257 317 48 0 chrX 22621121 22621225 -139978705 + L3 LINE CR1 1277 1385 -192 2445 170 57 2 chrX 22621260 22621678 -139978252 + L1MB5 LINE L1 5734 6174 0 687 126 0 0 chrX 22622657 22622752 -139977178 - L1PA16 LINE L1 -11 6155 6061 318 282 0 35 chrX 22623322 22623407 -139976523 + L2 LINE L2 3227 3308 -5 249 325 49 8 chrX 22623436 22623559 -139976371 - MARNA DNA Mariner -60 526 399 376 302 9 22 chrX 22623869 22624093 -139975837 + C-rich Low_complexity Low_complexity 1 221 0 33 66 0 0 chrX 22624228 22624289 -139975641 + GC_rich Low_complexity Low_complexity 1 61 0 1964 107 18 77 chrX 22624782 22625108 -139974822 - AluJo SINE Alu -5 307 1 5058 85 25 9 chrX 22625307 22625998 -139973932 + L1PB1 LINE L1 5450 6151 0 24 77 0 0 chrX 22626286 22626338 -139973592 + AT_rich Low_complexity Low_complexity 1 52 0 231 314 88 29 chrX 22626908 22627010 -139972920 + L2 LINE L2 3149 3256 -16 21 71 0 0 chrX 22627144 22627186 -139972744 + AT_rich Low_complexity Low_complexity 1 42 0 1960 143 7 0 chrX 22627194 22627487 -139972443 + AluSx SINE Alu 1 295 -17 2191 122 0 0 chrX 22628596 22628891 -139971039 + AluSx SINE Alu 1 295 -17 3206 203 94 75 chrX 22628893 22629094 -139970836 - L1MC5 LINE L1 -31 7930 7734 1274 155 9 27 chrX 22629094 22629313 -139970617 - MER20 DNA MER1_type -2 217 3 3206 203 94 75 chrX 22629313 22630305 -139969625 - L1MC5 LINE L1 -227 7734 6715 2409 106 0 0 chrX 22630305 22630617 -139969313 + AluSx SINE Alu 1 312 0 238 352 89 22 chrX 22633026 22633205 -139966725 - L3 LINE CR1 -151 1426 1236 634 269 134 9 chrX 22633598 22633814 -139966116 + MIR SINE MIR 3 245 -17 334 303 39 53 chrX 22634079 22634287 -139965643 - L3 LINE CR1 -552 1025 821 1432 194 103 66 chrX 22634300 22634635 -139965295 - MLT1C LTR MaLR -24 443 87 1818 177 43 0 chrX 22634635 22634934 -139964996 - AluJb SINE Alu 0 312 1 1432 194 103 66 chrX 22634934 22635025 -139964905 - MLT1C LTR MaLR -380 87 1 489 275 57 104 chrX 22635025 22635408 -139964522 - MLT1J LTR MaLR -7 504 140 451 269 128 53 chrX 22635482 22635764 -139964166 - L3 LINE CR1 -747 830 528 962 160 99 84 chrX 22635976 22636189 -139963741 + MER20 DNA MER1_type 4 219 0 1317 72 21 204 chrX 22636198 22636477 -139963453 - MER30 DNA MER1_type -2 228 1 41 21 0 0 chrX 22636842 22636890 -139963040 + GC_rich Low_complexity Low_complexity 1 48 0 31 58 0 0 chrX 22637741 22637793 -139962137 + GC_rich Low_complexity Low_complexity 1 52 0 383 268 52 21 chrX 22638137 22638234 -139961696 - L2 LINE L2 -22 3291 3192 257 245 116 54 chrX 22638320 22638467 -139961463 - L2 LINE L2 -133 3180 3025 388 301 213 16 chrX 22638494 22638743 -139961187 - L2 LINE L2 -804 2510 2213 1085 231 0 22 chrX 22638977 22639206 -139960724 + MER58A DNA MER1_type 1 224 0 1045 179 9 50 chrX 22639221 22639439 -139960491 + MER3 DNA MER1_type 1 209 0 302 333 101 0 chrX 22639541 22639679 -139960251 - MIR SINE MIR -10 252 101 24 0 0 0 chrX 22639922 22639946 -139959984 + AT_rich Low_complexity Low_complexity 1 24 0 2259 117 0 0 chrX 22642740 22643039 -139956891 - AluSg SINE Alu -11 299 1 2025 139 3 3 chrX 22644268 22644569 -139955361 - AluSg SINE Alu -9 301 1 305 299 94 34 chrX 22644595 22644946 -139954984 - L1ME LINE L1 -349 5772 5401 944 102 157 0 chrX 22645330 22645496 -139954434 + MER46A DNA MER2_type 45 236 0 2003 95 88 3 chrX 22646266 22646551 -139953379 - AluY SINE Alu -2 309 1 188 353 25 17 chrX 22646811 22646930 -139953000 + L2 LINE L2 2835 2954 -318 2174 126 39 13 chrX 22646965 22647295 -139952635 + MLT2D LTR ERVL 1 355 -42 429 36 0 0 chrX 22647295 22647350 -139952580 + (CA)n Simple_repeat Simple_repeat 1 55 0 2174 126 39 13 chrX 22647350 22647386 -139952544 + MLT2D LTR ERVL 355 389 -8 703 236 40 53 chrX 22647389 22647614 -139952316 + MIR SINE MIR 41 262 0 208 255 0 0 chrX 22647821 22647868 -139952062 + L2 LINE L2 3255 3301 -12 1965 143 10 0 chrX 22649208 22649502 -139950428 - AluJb SINE Alu -15 297 1 831 167 19 19 chrX 22651513 22651669 -139948261 - MER5A DNA MER1_type -33 156 1 214 213 0 21 chrX 22651840 22651887 -139948043 + T-rich Low_complexity Low_complexity 3 48 0 791 181 78 6 chrX 22652131 22652297 -139947633 - MER5A DNA MER1_type -6 183 6 424 219 0 12 chrX 22652297 22652379 -139947551 - MER5B DNA MER1_type -93 85 5 321 278 46 19 chrX 22652827 22652935 -139946995 - MIR3 SINE MIR -17 191 81 901 224 31 9 chrX 22652978 22653201 -139946729 + MER33 DNA MER1_type 1 228 -96 479 157 281 0 chrX 22653215 22653304 -139946626 - FLAM_C SINE Alu -15 118 5 369 267 96 43 chrX 22653361 22653548 -139946382 - L1MC4a LINE L1 -1884 5924 5728 220 242 11 11 chrX 22653782 22653873 -139946057 + C-rich Low_complexity Low_complexity 1 91 0 2111 101 35 0 chrX 22654355 22654642 -139945288 + AluY SINE Alu 1 297 -14 32 0 0 0 chrX 22655049 22655081 -139944849 + AT_rich Low_complexity Low_complexity 1 32 0 35 0 0 22 chrX 22655715 22655731 -139944199 + AT_rich Low_complexity Low_complexity 1 16 -29 1605 186 3 14 chrX 22655731 22656027 -139943903 + AluJb SINE Alu 1 293 -19 35 0 0 22 chrX 22656027 22656056 -139943874 + AT_rich Low_complexity Low_complexity 16 45 0 960 150 14 29 chrX 22656861 22657068 -139942862 + L1P LINE L1 5175 5378 -768 2152 276 106 34 chrX 22659296 22660394 -139939536 - L2 LINE L2 -90 3223 2034 235 173 19 58 chrX 22660636 22660688 -139939242 + LTR33A LTR ERVL 335 384 -139 220 269 0 54 chrX 22660798 22660891 -139939039 + C-rich Low_complexity Low_complexity 1 88 0 2259 76 3 17 chrX 22663360 22663648 -139936282 + AluSx SINE Alu 3 286 -26 3535 178 103 24 chrX 22663657 22664421 -139935509 + Charlie1 DNA MER1_type 1492 2316 -445 393 209 23 12 chrX 22664414 22664500 -139935430 + Charlie1 DNA MER1_type 2675 2761 0 * 2394 91 3 0 chrX 22665098 22665395 -139934535 + AluSp SINE Alu 1 298 -15 610 271 113 0 chrX 22669855 22670032 -139929898 + MIR SINE MIR 37 233 -29 2066 89 48 0 chrX 22670172 22670442 -139929488 + AluSq SINE Alu 15 297 -16 226 184 0 79 chrX 22670906 22670982 -139928948 - L1MB5 LINE L1 -135 6039 5970 251 222 37 19 chrX 22671072 22671180 -139928750 + (CCGCG)n Simple_repeat Simple_repeat 2 111 0 220 154 39 0 chrX 22671260 22671312 -139928618 + (CGGG)n Simple_repeat Simple_repeat 1 54 0 27 29 0 0 chrX 22671338 22671372 -139928558 + GC_rich Low_complexity Low_complexity 1 34 0 42 77 0 0 chrX 22672843 22672934 -139926996 + GC_rich Low_complexity Low_complexity 1 91 0 276 284 43 25 chrX 22672952 22673114 -139926816 + (CCCCG)n Simple_repeat Simple_repeat 1 165 0 29 28 0 0 chrX 22673161 22673197 -139926733 + GC_rich Low_complexity Low_complexity 1 36 0 493 183 229 0 chrX 22675523 22675654 -139924276 + L1ME4a LINE L1 5955 6115 -6 30 59 0 0 chrX 22675821 22675872 -139924058 + AT_rich Low_complexity Low_complexity 1 51 0 290 243 21 36 chrX 22676750 22676890 -139923040 + (CCCG)n Simple_repeat Simple_repeat 2 139 0 247 333 30 15 chrX 22676923 22677055 -139922875 + C-rich Low_complexity Low_complexity 2 135 0 186 71 0 0 chrX 22680116 22680144 -139919786 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 668 201 90 5 chrX 22681583 22681772 -139918158 - AluSg1 SINE Alu -102 207 3 419 221 67 0 chrX 22682063 22682167 -139917763 - MIR SINE MIR -69 193 83 349 151 27 41 chrX 22682301 22682374 -139917556 + L1MB2 LINE L1 6072 6143 -28 1201 158 0 0 chrX 22682380 22682564 -139917366 + AluSg/x SINE Alu 129 312 0 424 214 45 11 chrX 22682743 22682832 -139917098 + MER58 DNA MER1_type 9 100 -241 1238 210 0 37 chrX 22685461 22685761 -139914169 + AluSx SINE Alu 3 291 -11 1072 184 4 128 chrX 22685953 22686203 -139913727 + MER20 DNA MER1_type 1 219 0 319 192 69 115 chrX 22686520 22686650 -139913280 - MIR3 SINE MIR -18 190 67 183 42 0 0 chrX 22686688 22686712 -139913218 + (A)n Simple_repeat Simple_repeat 1 24 0 2243 131 35 26 chrX 22686996 22687423 -139912507 + L1 LINE L1 4100 4530 -1616 370 98 0 0 chrX 22688536 22688587 -139911343 + L1MB2 LINE L1 6105 6155 -16 514 371 0 17 chrX 22689809 22690153 -139909777 + C-rich Low_complexity Low_complexity 1 338 0 286 195 158 0 chrX 22692016 22692098 -139907832 + MIR3 SINE MIR 108 202 -6 392 165 51 38 chrX 22693822 22693901 -139906029 - L3 LINE CR1 -3 1574 1495 2292 113 0 3 chrX 22694128 22694439 -139905491 - AluSg SINE Alu 0 310 1 235 311 98 23 chrX 22694580 22694712 -139905218 - MIR3 SINE MIR -9 199 58 839 260 65 0 chrX 22694718 22694949 -139904981 - MIR SINE MIR -1 261 16 364 179 0 39 chrX 22694957 22695035 -139904895 - MER116 DNA Mariner -3 77 3 1586 148 30 4 chrX 22695101 22695372 -139904558 - L1 LINE L1 -2338 3808 3531 248 279 23 23 chrX 22695383 22695469 -139904461 - L1M4 LINE L1 -2019 4127 4042 360 268 94 89 chrX 22696170 22696405 -139903525 + MIR SINE MIR 20 255 -7 2235 96 0 0 chrX 22697010 22697333 -139902597 + AluSx SINE Alu 1 323 0 1129 157 91 5 chrX 22700245 22700477 -139899453 - L1MB3 LINE L1 -11 6172 5922 23 68 0 0 chrX 22701333 22701377 -139898553 + AT_rich Low_complexity Low_complexity 1 44 0 2859 16 0 0 chrX 22701522 22701837 -139898093 + AluYb8 SINE Alu 1 315 -3 406 123 27 0 chrX 22703484 22703557 -139896373 - MER58 DNA MER1_type -2222 198 124 1630 176 0 58 chrX 22705394 22705707 -139894223 + AluJb SINE Alu 1 295 -17 2014 136 3 7 chrX 22706300 22706610 -139893320 + AluSx SINE Alu 1 309 -3 1929 166 40 16 chrX 22707243 22707623 -139892307 - L1MB8 LINE L1 -1 6177 5789 289 70 116 0 chrX 22708100 22708143 -139891787 - L3 LINE CR1 -1 1576 1529 2235 92 3 0 chrX 22708789 22709073 -139890857 - AluSp SINE Alu -6 307 23 339 287 65 28 chrX 22710702 22710810 -139889120 + L2 LINE L2 3157 3268 -4 5539 174 82 27 chrX 22711286 22711565 -139888365 + Charlie1a DNA MER1_type 1 263 -2498 3858 52 0 2 chrX 22711565 22712022 -139887908 + L1PA8 LINE L1 5717 6172 0 5539 174 82 27 chrX 22712022 22712941 -139886989 + Charlie1a DNA MER1_type 263 1265 -190 2461 77 0 0 chrX 22713419 22713718 -139886212 - AluY SINE Alu -12 299 1 1563 120 50 35 chrX 22716091 22716349 -139883581 - AluJb SINE Alu -46 266 5 1967 105 3 72 chrX 22716362 22716694 -139883236 - AluSc SINE Alu 0 309 1 180 125 0 0 chrX 22716887 22716919 -139883011 + (CATA)n Simple_repeat Simple_repeat 2 33 0 22 56 0 0 chrX 22718079 22718115 -139881815 + AT_rich Low_complexity Low_complexity 1 36 0 2245 108 7 0 chrX 22718640 22718945 -139880985 + AluSx SINE Alu 1 307 -5 504 290 137 18 chrX 22720910 22721355 -139878575 - L1ME4a LINE L1 -239 5882 5385 331 257 26 35 chrX 22721887 22722000 -139877930 - L1MC5 LINE L1 -36 7925 7814 2325 100 3 3 chrX 22722303 22722613 -139877317 + AluSg SINE Alu 1 310 0 189 0 0 0 chrX 22722911 22722932 -139876998 + (T)n Simple_repeat Simple_repeat 1 21 0 46 109 0 11 chrX 22724760 22725078 -139874852 + GC_rich Low_complexity Low_complexity 1 272 0 22 88 0 0 chrX 22725185 22725242 -139874688 + GC_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chrX 22727469 22727519 -139872411 + AT_rich Low_complexity Low_complexity 1 50 0 263 257 0 73 chrX 22728320 22728456 -139871474 + GA-rich Low_complexity Low_complexity 4 129 0 1107 155 45 53 chrX 22730491 22730772 -139869158 - L1ME1 LINE L1 -235 5931 5650 183 42 0 0 chrX 22731731 22731755 -139868175 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chrX 22731765 22731797 -139868133 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chrX 22733045 22733085 -139866845 + AT_rich Low_complexity Low_complexity 1 40 0 214 271 10 42 chrX 22733467 22733563 -139866367 + (CGGGG)n Simple_repeat Simple_repeat 1 93 0 523 335 0 0 chrX 22733657 22733827 -139866103 + G-rich Low_complexity Low_complexity 1 170 0 23 0 0 0 chrX 22733838 22733861 -139866069 + GC_rich Low_complexity Low_complexity 1 23 0 647 47 23 0 chrX 22734459 22734545 -139865385 - AluSc SINE Alu -4 305 218 1483 91 0 5 chrX 22734545 22734731 -139865199 - AluSc SINE Alu -124 185 1 2312 99 0 0 chrX 22734733 22735027 -139864903 - AluSx SINE Alu -18 294 1 439 296 46 13 chrX 22735234 22735386 -139864544 + MER103 DNA DNA 2 158 -8 1014 173 0 0 chrX 22735555 22735705 -139864225 - FAM SINE Alu -23 162 13 26 0 0 0 chrX 22735711 22735737 -139864193 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chrX 22737392 22737420 -139862510 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 22738802 22738823 -139861107 + AT_rich Low_complexity Low_complexity 1 21 0 250 358 0 0 chrX 22739327 22739464 -139860466 + G-rich Low_complexity Low_complexity 1 137 0 25 0 0 0 chrX 22739464 22739489 -139860441 + GC_rich Low_complexity Low_complexity 1 25 0 1227 118 65 0 chrX 22739661 22739847 -139860083 + AluSg/x SINE Alu 108 305 -5 1249 108 72 5 chrX 22739933 22740128 -139859802 + MER3 DNA MER1_type 1 208 -1 321 68 0 0 chrX 22741478 22741522 -139858408 + (TA)n Simple_repeat Simple_repeat 1 44 0 200 229 12 48 chrX 22742500 22742583 -139857347 + CT-rich Low_complexity Low_complexity 2 81 0 222 242 30 15 chrX 22743069 22743135 -139856795 - MIR SINE MIR 0 262 196 22 70 0 0 chrX 22743465 22743508 -139856422 + GC_rich Low_complexity Low_complexity 1 43 0 263 241 0 29 chrX 22743541 22743678 -139856252 + C-rich Low_complexity Low_complexity 1 133 0 186 297 0 0 chrX 22743837 22743948 -139855982 + C-rich Low_complexity Low_complexity 1 111 0 234 200 20 0 chrX 22744127 22744177 -139855753 - L1M4b LINE L1 -6378 481 431 497 239 26 9 chrX 22744246 22744359 -139855571 - MIR SINE MIR -106 156 42 288 248 88 0 chrX 22746198 22746311 -139853619 - MIR SINE MIR -71 191 69 272 219 55 41 chrX 22746524 22746597 -139853333 - L2 LINE L2 -30 3242 3169 2558 143 30 23 chrX 22747466 22748032 -139851898 + L1MA9 LINE L1 5645 6334 0 243 277 13 65 chrX 22748802 22748957 -139850973 + G-rich Low_complexity Low_complexity 4 150 0 280 242 31 31 chrX 22748968 22749129 -139850801 + (CGGG)n Simple_repeat Simple_repeat 3 163 0 21 36 0 0 chrX 22749129 22749157 -139850773 + GC_rich Low_complexity Low_complexity 1 28 0 982 174 42 0 chrX 22749258 22749448 -139850482 + MER3 DNA MER1_type 12 209 0 276 246 0 0 chrX 22750371 22750436 -139849494 - L2 LINE L2 -19 3253 3189 296 300 0 0 chrX 22753339 22753409 -139846521 + MIR SINE MIR 82 151 -57 30 45 0 0 chrX 22753920 22753964 -139845966 + GC_rich Low_complexity Low_complexity 1 44 0 563 144 125 25 chrX 22755030 22755190 -139844740 - Charlie1 DNA MER1_type 0 2761 2586 891 92 0 0 chrX 22756209 22756329 -139843601 + (C)n Simple_repeat Simple_repeat 1 120 0 28 71 0 0 chrX 22756387 22756443 -139843487 + GC_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chrX 22756876 22756900 -139843030 + AT_rich Low_complexity Low_complexity 1 24 0 862 193 0 28 chrX 22756914 22757090 -139842840 - AluJo SINE Alu -31 281 111 480 308 12 15 chrX 22757207 22757438 -139842492 + C-rich Low_complexity Low_complexity 1 230 0 276 222 19 80 chrX 22757489 22757651 -139842279 + C-rich Low_complexity Low_complexity 3 154 0 2239 112 0 0 chrX 22808673 22808969 -139790961 - AluSx SINE Alu -16 296 1 463 296 7 33 chrX 22809764 22809916 -139790014 - MER5B DNA MER1_type -29 149 2 187 246 72 14 chrX 22811095 22811164 -139788766 - L2 LINE L2 -63 3209 3137 1715 131 95 93 chrX 22811376 22811502 -139788428 - MLT1B LTR MaLR 0 390 266 2298 100 0 0 chrX 22811502 22811791 -139788139 - AluSg SINE Alu -21 289 1 1715 131 95 93 chrX 22811791 22812052 -139787878 - MLT1B LTR MaLR -124 266 2 255 134 0 75 chrX 22812400 22812467 -139787463 + (TTTTC)n Simple_repeat Simple_repeat 3 64 0 2463 70 0 0 chrX 22813303 22813601 -139786329 - AluY SINE Alu -13 298 1 23 0 0 0 chrX 22813718 22813741 -139786189 + AT_rich Low_complexity Low_complexity 1 23 0 350 227 140 27 chrX 22814093 22814243 -139785687 + L1ME4a LINE L1 5954 6120 -1 591 229 153 0 chrX 22814397 22814554 -139785376 + MER5A DNA MER1_type 9 189 0 2206 101 0 7 chrX 22814902 22815199 -139784731 + AluSx SINE Alu 1 295 -17 209 167 42 0 chrX 22817956 22818004 -139781926 + T-rich Low_complexity Low_complexity 4 53 0 205 135 54 0 chrX 22818122 22818159 -139781771 + (CTTTG)n Simple_repeat Simple_repeat 5 43 0 197 300 33 0 chrX 22819200 22819260 -139780670 - L2 LINE L2 -219 3053 2992 2035 110 0 21 chrX 22819473 22819764 -139780166 - AluJb SINE Alu -24 288 4 537 185 124 162 chrX 22821749 22822014 -139777916 + MIR SINE MIR 2 256 -6 296 350 0 0 chrX 22822116 22822196 -139777734 + L2 LINE L2 3186 3265 -7 387 221 10 29 chrX 22822377 22822481 -139777449 - MER5B DNA MER1_type -76 102 1 2063 152 0 9 chrX 22824026 22824341 -139775589 - AluJb SINE Alu 0 312 1 217 303 34 76 chrX 22824705 22824824 -139775106 + MIR SINE MIR 41 154 -108 908 299 34 6 chrX 22825943 22826267 -139773663 + MER102b DNA MER1_type 1 333 -8 2415 87 3 0 chrX 22826493 22826802 -139773128 - AluSg SINE Alu 0 310 1 244 356 25 19 chrX 22826809 22826969 -139772961 - MIR SINE MIR -42 220 60 1199 163 5 10 chrX 22827002 22827211 -139772719 + MER3 DNA MER1_type 2 209 0 251 276 11 23 chrX 22827730 22827817 -139772113 - HsTC2 DNA Tc2 -1812 86 1 279 194 0 28 chrX 22828843 22828915 -139771015 + MER116 DNA Mariner 1 70 -10 263 219 122 0 chrX 22829788 22829870 -139770060 - MIR SINE MIR -55 207 116 577 305 190 10 chrX 22830110 22830505 -139769425 - L2 LINE L2 -84 3229 2739 21 36 0 0 chrX 22831043 22831071 -139768859 + AT_rich Low_complexity Low_complexity 1 28 0 196 30 61 0 chrX 22831868 22831901 -139768029 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1737 141 9 53 chrX 22831926 22832245 -139767685 - AluJo SINE Alu -2 310 6 1410 191 38 48 chrX 22832778 22833071 -139766859 + AluJo SINE Alu 1 290 -22 290 123 18 0 chrX 22833080 22833137 -139766793 + (TA)n Simple_repeat Simple_repeat 1 58 0 481 247 13 20 chrX 22833304 22833454 -139766476 - MER103 DNA DNA -3 163 15 249 340 0 0 chrX 22833976 22834073 -139765857 - Charlie8 DNA MER1_type -2236 181 85 470 163 170 7 chrX 22834117 22834252 -139765678 + L1ME4a LINE L1 5501 5657 -513 23 33 0 0 chrX 22834363 22834393 -139765537 + AT_rich Low_complexity Low_complexity 1 30 0 372 246 91 96 chrX 22834530 22834717 -139765213 - L2 LINE L2 -557 2757 2572 371 138 15 0 chrX 22834721 22834786 -139765144 - MER20 DNA MER1_type -5 214 149 208 256 278 36 chrX 22834988 22835211 -139764719 + L2 LINE L2 1695 1971 -1343 331 320 94 17 chrX 22835296 22835530 -139764400 + L1ME4a LINE L1 5764 6015 -106 597 286 88 68 chrX 22835600 22835954 -139763976 + L2 LINE L2 2149 2517 -797 2264 105 0 0 chrX 22835954 22836249 -139763681 + AluSg SINE Alu 1 295 -15 597 286 88 68 chrX 22836249 22836380 -139763550 + L2 LINE L2 2517 2644 -670 816 182 144 52 chrX 22836380 22836677 -139763253 + MER33 DNA MER1_type 1 324 0 308 247 213 33 chrX 22838468 22838618 -139761312 + MER5B DNA MER1_type 2 178 0 21 0 0 0 chrX 22838834 22838855 -139761075 + AT_rich Low_complexity Low_complexity 1 21 0 273 328 112 15 chrX 22838855 22838989 -139760941 - MIR SINE MIR -55 207 61 494 256 134 55 chrX 22839241 22839479 -139760451 - MIR SINE MIR 0 262 6 246 311 33 25 chrX 22841546 22841668 -139758262 - MIR SINE MIR -21 241 119 208 176 94 82 chrX 22843291 22843376 -139756554 - L2 LINE L2 -561 2753 2668 1838 168 30 0 chrX 22844158 22844455 -139755475 + AluJb SINE Alu 1 306 -6 2536 52 0 13 chrX 22845188 22845496 -139754434 + AluY SINE Alu 1 304 -7 2355 88 0 3 chrX 22845697 22845994 -139753936 + AluSg SINE Alu 1 296 -14 2974 110 2 24 chrX 22846412 22846875 -139753055 - L1PA11 LINE L1 0 6174 5722 3206 136 19 3 chrX 22846875 22847462 -139752468 + L1P LINE L1 4789 5384 -762 315 259 54 75 chrX 22847536 22847830 -139752100 - Charlie7 DNA MER1_type -2223 389 102 504 0 0 0 chrX 22848702 22848758 -139751172 + (TTTTA)n Simple_repeat Simple_repeat 1 56 0 2173 88 0 7 chrX 22848758 22849041 -139750889 - AluSq SINE Alu -32 281 1 2104 105 6 37 chrX 22849844 22850167 -139749763 + AluSq SINE Alu 1 313 0 780 151 48 87 chrX 22850937 22851143 -139748787 + MER20 DNA MER1_type 1 198 -21 3562 51 7 2 chrX 22851149 22851600 -139748330 + L1PA8 LINE L1 5719 6171 -1 2310 102 0 0 chrX 22851785 22852080 -139747850 - AluSg SINE Alu -15 295 1 1715 141 48 29 chrX 22852138 22852514 -139747416 - Charlie1b DNA MER1_type -140 383 1 1533 223 53 18 chrX 22852526 22852979 -139746951 + Charlie4a DNA MER1_type 39 507 -1 403 275 88 6 chrX 22853445 22853616 -139746314 - HAL1 LINE L1 0 2507 2323 1979 209 45 45 chrX 22853806 22854410 -139745520 - HAL1 LINE L1 -636 1871 1268 358 230 60 0 chrX 22854491 22854591 -139745339 - HAL1 LINE L1 -1798 709 604 421 271 59 21 chrX 22854711 22854945 -139744985 - HAL1 LINE L1 -2186 321 1 1070 258 16 12 chrX 22855281 22855533 -139744397 - MIR SINE MIR 0 262 10 27 29 0 0 chrX 22859702 22859736 -139740194 + AT_rich Low_complexity Low_complexity 1 34 0 619 168 9 9 chrX 22859925 22860032 -139739898 + L2 LINE L2 3207 3313 0 227 244 60 149 chrX 22860067 22860235 -139739695 + L2 LINE L2 3161 3313 0 2674 26 0 3 chrX 22861425 22861730 -139738200 - AluY SINE Alu -7 304 1 936 197 103 5 chrX 22861950 22862153 -139737777 - MER58A DNA MER1_type 0 224 2 1187 138 153 0 chrX 22862378 22862581 -139737349 + MER46A DNA MER2_type 1 234 -2 2443 81 0 0 chrX 22862660 22862956 -139736974 + AluSp SINE Alu 1 296 -17 404 102 85 0 chrX 22863163 22863222 -139736708 + FRAM SINE Alu 74 137 -39 1120 184 202 4 chrX 22863267 22863495 -139736435 + AluJo SINE Alu 10 282 -30 234 128 0 0 chrX 22863500 22863539 -139736391 + (TA)n Simple_repeat Simple_repeat 1 39 0 1243 272 102 19 chrX 22863690 22864202 -139735728 + MLT1F1 LTR MaLR 3 565 -2 188 277 0 0 chrX 22864255 22864302 -139735628 + L2 LINE L2 3261 3307 -6 2103 119 7 0 chrX 22865456 22865749 -139734181 + AluSx SINE Alu 1 295 -17 1039 146 38 0 chrX 22866200 22866358 -139733572 - AluJb SINE Alu -16 296 133 25 31 0 0 chrX 22866945 22866977 -139732953 + AT_rich Low_complexity Low_complexity 1 32 0 365 233 95 26 chrX 22871410 22871526 -139728404 + MIR SINE MIR 24 147 -115 1256 114 0 0 chrX 22871680 22871856 -139728074 + AluSp SINE Alu 137 312 -1 639 168 8 8 chrX 22873829 22873948 -139725982 + FLAM_A SINE Alu 1 119 -14 382 242 11 27 chrX 22873962 22874074 -139725856 - L1MC4 LINE L1 -1339 6983 1996 215 268 0 0 chrX 22874796 22874852 -139725078 + L2 LINE L2 3172 3227 -86 667 228 97 31 chrX 22875233 22875461 -139724469 - Charlie8 DNA MER1_type -2141 276 34 281 159 16 0 chrX 22876081 22876144 -139723786 + CT-rich Low_complexity Low_complexity 1 64 0 345 24 0 0 chrX 22878682 22878724 -139721206 + (CA)n Simple_repeat Simple_repeat 2 43 0 29 78 0 0 chrX 22879390 22879454 -139720476 + GC_rich Low_complexity Low_complexity 1 64 0 240 105 0 0 chrX 22879890 22879921 -139720009 + (TC)n Simple_repeat Simple_repeat 1 34 -4 229 51 51 0 chrX 22879921 22879960 -139719970 + (CA)n Simple_repeat Simple_repeat 1 41 0 240 105 0 0 chrX 22879960 22879966 -139719964 + (TC)n Simple_repeat Simple_repeat 33 38 0 21 0 0 0 chrX 22880757 22880778 -139719152 + AT_rich Low_complexity Low_complexity 1 21 0 242 54 0 27 chrX 22881032 22881069 -139718861 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chrX 22881403 22881425 -139718505 + GC_rich Low_complexity Low_complexity 1 22 0 252 313 25 0 chrX 22882051 22882131 -139717799 + GA-rich Low_complexity Low_complexity 5 86 0 25 51 0 0 chrX 22882239 22882278 -139717652 + GC_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chrX 22883842 22883862 -139716068 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 222 37 0 0 chrX 22884009 22884036 -139715894 + (CGG)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chrX 22884235 22884270 -139715660 + GC_rich Low_complexity Low_complexity 1 35 0 512 252 60 20 chrX 22884518 22884669 -139715261 + MIR SINE MIR 52 208 -54 201 289 118 0 chrX 22884825 22884901 -139715029 - L2 LINE L2 0 3272 3188 231 36 0 0 chrX 22887403 22887431 -139712499 + (CA)n Simple_repeat Simple_repeat 2 29 0 254 308 0 22 chrX 22887540 22887631 -139712299 + CT-rich Low_complexity Low_complexity 4 92 0 299 253 0 0 chrX 22890001 22890096 -139709834 + CT-rich Low_complexity Low_complexity 2 96 0 36 70 0 0 chrX 22890300 22890371 -139709559 + GC_rich Low_complexity Low_complexity 1 71 0 366 115 0 0 chrX 22890407 22890468 -139709462 + (CCG)n Simple_repeat Simple_repeat 3 63 0 260 228 34 13 chrX 22890727 22890976 -139708954 + CT-rich Low_complexity Low_complexity 1 254 0 218 293 37 12 chrX 22890988 22891070 -139708860 + CT-rich Low_complexity Low_complexity 2 85 0 22 56 0 0 chrX 22891655 22891691 -139708239 + AT_rich Low_complexity Low_complexity 1 36 0 180 77 0 0 chrX 22894259 22894285 -139705645 + (TC)n Simple_repeat Simple_repeat 2 27 0 216 0 0 0 chrX 22895410 22895434 -139704496 + (TA)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chrX 22896336 22896369 -139703561 + AT_rich Low_complexity Low_complexity 1 33 0 291 114 0 0 chrX 22899198 22899242 -139700688 + (A)n Simple_repeat Simple_repeat 1 44 0 542 118 11 0 chrX 22900849 22900942 -139698988 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 2274 112 0 7 chrX 22901940 22902235 -139697695 + AluSx SINE Alu 1 293 -19 643 218 68 77 chrX 22902263 22902379 -139697551 - MIR SINE MIR -34 228 113 515 236 0 0 chrX 22902379 22902489 -139697441 - MER81 DNA DNA -1 113 4 643 218 68 77 chrX 22902489 22902592 -139697338 - MIR SINE MIR -149 113 11 321 299 36 44 chrX 22902605 22902742 -139697188 - MIR3 SINE MIR -67 141 6 665 265 81 11 chrX 22903760 22904032 -139695898 - L1ME LINE L1 -347 5774 5484 2248 65 79 10 chrX 22904210 22904501 -139695429 + AluSq SINE Alu 1 311 -2 360 331 73 0 chrX 22904563 22904714 -139695216 + MIR SINE MIR 1 162 -100 2390 100 0 0 chrX 22904801 22905102 -139694828 - AluSx SINE Alu -11 301 1 398 354 52 13 chrX 22905102 22905308 -139694622 - L1ME LINE L1 -429 5692 5485 207 0 0 0 chrX 22905327 22905350 -139694580 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1899 146 4 4 chrX 22905352 22905632 -139694298 - AluJb SINE Alu -31 281 2 269 264 8 0 chrX 22905637 22905751 -139694179 - L1P5 LINE L1 -717 5437 5321 357 218 47 37 chrX 22905922 22906044 -139693886 + MLT1J LTR MaLR 54 221 -290 2162 88 4 0 chrX 22907485 22907757 -139692173 - AluSg1 SINE Alu -2 307 35 189 0 0 0 chrX 22908236 22908257 -139691673 + (T)n Simple_repeat Simple_repeat 1 21 0 2325 102 0 0 chrX 22908347 22908667 -139691263 - AluSx SINE Alu 0 320 1 21 0 0 0 chrX 22908667 22908688 -139691242 + AT_rich Low_complexity Low_complexity 1 21 0 2512 90 0 0 chrX 22909188 22909499 -139690431 - AluY SINE Alu 0 311 1 26 64 0 0 chrX 22909535 22909582 -139690348 + AT_rich Low_complexity Low_complexity 1 47 0 2362 112 3 0 chrX 22909818 22910130 -139689800 - AluSp SINE Alu 0 313 1 225 0 0 0 chrX 22910957 22910982 -139688948 + (A)n Simple_repeat Simple_repeat 1 25 0 2177 104 0 0 chrX 22910985 22911264 -139688666 + AluSg SINE Alu 1 279 -31 189 0 0 0 chrX 22911301 22911322 -139688608 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 510 268 83 13 chrX 22911729 22911886 -139688044 + MLT1H1 LTR MaLR 26 193 -362 490 176 78 161 chrX 22911972 22912165 -139687765 + MLT1H1 LTR MaLR 379 555 0 1163 271 77 29 chrX 22912165 22912608 -139687322 + MLT1J LTR MaLR 38 501 -10 408 317 83 33 chrX 22912718 22913199 -139686731 - L2 LINE L2 -65 3207 2712 910 292 98 22 chrX 22913386 22913752 -139686178 - MLT1J LTR MaLR -47 464 71 269 208 38 0 chrX 22913806 22913859 -139686071 + MER58 DNA MER1_type 191 245 -96 2328 72 9 56 chrX 22916919 22917240 -139682690 - AluSg SINE Alu -4 306 1 2303 117 104 0 chrX 22917533 22917919 -139682011 - MSTB LTR MaLR 0 426 1 1179 277 106 10 chrX 22918195 22918592 -139681338 + MLT1J2 LTR MaLR 1 435 -15 2401 69 0 3 chrX 22918600 22918914 -139681016 - AluSq SINE Alu 0 313 1 2412 93 3 0 chrX 22918984 22919284 -139680646 - AluSp SINE Alu -12 301 1 2426 94 3 0 chrX 22919553 22919852 -139680078 + AluSx SINE Alu 1 300 -12 713 124 283 0 chrX 22920204 22920349 -139679581 - MER5A DNA MER1_type 0 189 4 610 333 183 18 chrX 22920575 22920807 -139679123 - L2 LINE L2 -276 2996 2803 2366 92 3 0 chrX 22920807 22921101 -139678829 - AluSg SINE Alu -15 295 1 610 333 183 18 chrX 22921101 22921501 -139678429 - L2 LINE L2 -469 2803 2262 317 224 40 0 chrX 22921659 22921735 -139678195 - MER102a DNA MER1_type 0 330 252 2385 96 0 0 chrX 22921919 22922221 -139677709 + AluSx SINE Alu 1 302 -10 2044 135 0 10 chrX 22922354 22922658 -139677272 + AluJb SINE Alu 1 301 -11 213 211 105 0 chrX 22922684 22922741 -139677189 - L2 LINE L2 -1245 2069 2007 2274 110 0 16 chrX 22922953 22923261 -139676669 + AluSx SINE Alu 5 307 -5 278 23 23 0 chrX 22923556 22923599 -139676331 - L1MA6 LINE L1 0 6300 6257 565 208 0 39 chrX 22923972 22924102 -139675828 + MER94 DNA DNA 7 131 -3 722 199 0 0 chrX 22928213 22928359 -139671571 - L1ME3A LINE L1 -5 6165 6020 286 210 0 0 chrX 22928411 22928473 -139671457 - L1M4 LINE L1 -1577 4569 4508 1914 142 48 3 chrX 22928487 22928776 -139671154 - AluJo SINE Alu -10 302 1 191 36 36 0 chrX 22929345 22929373 -139670557 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1648 163 39 18 chrX 22931025 22931190 -139668740 - AluJo SINE Alu -19 293 118 216 0 0 0 chrX 22931190 22931214 -139668716 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1648 163 39 18 chrX 22931214 22931331 -139668599 - AluJo SINE Alu -194 118 5 1118 177 26 35 chrX 22931523 22931749 -139668181 - MER58A DNA MER1_type 0 224 1 2452 72 3 0 chrX 22931959 22932252 -139667678 + AluSp SINE Alu 1 294 -19 2272 110 49 9 chrX 22932398 22932744 -139667186 - THE1B LTR MaLR 0 364 5 309 247 13 0 chrX 22932959 22933036 -139666894 + MER116 DNA Mariner 3 80 0 789 225 60 156 chrX 22933038 22933242 -139666688 - L1MC5 LINE L1 -142 7900 7678 2178 118 3 0 chrX 22933242 22933530 -139666400 - AluSx SINE Alu -23 289 1 789 225 60 156 chrX 22933530 22933974 -139665956 - L1MC5 LINE L1 -364 7678 7258 2396 112 0 6 chrX 22934078 22934392 -139665538 - AluSx SINE Alu 0 312 1 367 321 95 86 chrX 22934398 22934840 -139665090 - L1ME LINE L1 -399 5765 5320 21 36 0 0 chrX 22934875 22934903 -139665027 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chrX 22934987 22935032 -139664898 + AT_rich Low_complexity Low_complexity 1 45 0 2513 87 0 0 chrX 22935032 22935344 -139664586 - AluSx SINE Alu 0 312 1 253 173 13 27 chrX 22935864 22935939 -139663991 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 888 263 0 32 chrX 22936723 22936970 -139662960 + MIR SINE MIR 20 258 -4 207 283 0 0 chrX 22937363 22937402 -139662528 + CT-rich Low_complexity Low_complexity 3 44 -11 2139 143 26 0 chrX 22937402 22937710 -139662220 - 7SLRNA srpRNA srpRNA -4 316 1 207 283 0 0 chrX 22937710 22937723 -139662207 + CT-rich Low_complexity Low_complexity 43 55 0 425 227 172 20 chrX 22937733 22937931 -139661999 - L1MC5 LINE L1 -52 7909 7682 * 1469 157 31 5 chrX 22937911 22938231 -139661699 - L1MB3 LINE L1 0 6184 5855 193 292 89 89 chrX 22938349 22938517 -139661413 + L3 LINE CR1 1401 1568 -9 281 215 123 0 chrX 22938600 22938665 -139661265 - L3 LINE CR1 -1 1576 1504 2148 106 0 3 chrX 22938962 22939244 -139660686 - AluSx SINE Alu -31 281 1 633 81 0 30 chrX 22939244 22939343 -139660587 - L1MB4 LINE L1 -309 5871 5776 2999 174 56 108 chrX 22939350 22939398 -139660532 - L1MC5 LINE L1 -262 7699 7650 2039 136 48 0 chrX 22939398 22939693 -139660237 - AluSx SINE Alu -3 309 1 2999 174 56 108 chrX 22939693 22939751 -139660179 - L1MC5 LINE L1 -311 7650 7591 2487 82 0 0 chrX 22939751 22940056 -139659874 + AluSx SINE Alu 1 305 -7 2999 174 56 108 chrX 22940056 22940130 -139659800 - L1MC5 LINE L1 -370 7591 7515 4167 96 30 3 chrX 22940130 22940736 -139659194 + L1PA16 LINE L1 5545 6166 0 2999 174 56 108 chrX 22940736 22941647 -139658283 - L1MC5 LINE L1 -446 7515 6663 256 210 0 0 chrX 22941671 22941733 -139658197 - L1ME4a LINE L1 -2 6119 6058 706 218 116 104 chrX 22942312 22942725 -139657205 - Charlie2 DNA MER1_type -2 2860 2443 593 195 8 49 chrX 22992782 22992821 -139607109 + MER2 DNA MER2_type 228 267 -78 2287 104 0 13 chrX 22992821 22993130 -139606800 - AluSc SINE Alu -4 305 1 593 195 8 49 chrX 22993130 22993213 -139606717 + MER2 DNA MER2_type 267 345 0 191 227 134 101 chrX 22993745 22993864 -139606066 + MIR SINE MIR 70 192 -70 259 282 13 0 chrX 22994659 22994737 -139605193 - L1MB3 LINE L1 -332 5789 5711 183 80 0 0 chrX 22995531 22995556 -139604374 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chrX 22997756 22997777 -139602153 + AT_rich Low_complexity Low_complexity 1 21 0 1907 71 0 13 chrX 22999000 22999239 -139600691 - AluSc SINE Alu -73 236 1 246 226 0 0 chrX 22999948 23000010 -139599920 + L1ME4a LINE L1 6059 6120 -1 416 290 71 66 chrX 23000590 23000773 -139599157 + MIR3 SINE MIR 1 154 -54 21 36 0 0 chrX 23000790 23000818 -139599112 + AT_rich Low_complexity Low_complexity 1 28 0 1406 150 4 12 chrX 23001007 23001254 -139598676 + L1PA13 LINE L1 5900 6144 -19 27 0 0 0 chrX 23001255 23001282 -139598648 + AT_rich Low_complexity Low_complexity 1 27 0 2122 141 77 5 chrX 23001841 23002230 -139597700 + L1MB4 LINE L1 5764 6180 0 1732 154 117 43 chrX 23002366 23002653 -139597277 - MSTD LTR MaLR 0 396 131 1961 136 3 7 chrX 23002653 23002955 -139596975 + AluSg SINE Alu 1 301 -9 2270 88 3 3 chrX 23002955 23003250 -139596680 + AluSq SINE Alu 1 295 -18 1732 154 117 43 chrX 23003250 23003330 -139596600 - MSTD LTR MaLR -264 132 1 1471 144 12 19 chrX 23003457 23003713 -139596217 + MER2 DNA MER2_type 1 254 -91 1949 238 19 68 chrX 23003817 23004489 -139595441 - L2 LINE L2 -1906 1408 770 210 143 0 0 chrX 23004499 23004534 -139595396 + L2 LINE L2 3263 3297 -16 437 291 80 0 chrX 23004741 23004892 -139595038 - MER117 DNA MER1_type -34 163 1 665 249 8 73 chrX 23005991 23006236 -139593694 + MIR SINE MIR 29 257 -5 4059 139 29 7 chrX 23007181 23008202 -139591728 - L1M2 LINE L1 -628 5684 4641 1342 180 6 67 chrX 23008210 23008325 -139591605 - L1M2 LINE L1 -2106 4040 3920 2342 99 16 0 chrX 23008325 23008628 -139591302 + AluSx SINE Alu 3 310 -2 1342 180 6 67 chrX 23008628 23008840 -139591090 - L1M2 LINE L1 -2226 3920 3733 2261 109 0 0 chrX 23008956 23009260 -139590670 - AluSc SINE Alu -5 304 1 21 0 0 0 chrX 23009359 23009380 -139590550 + AT_rich Low_complexity Low_complexity 1 21 0 239 242 66 11 chrX 23009691 23009782 -139590148 + L1ME4a LINE L1 5957 6052 -69 182 150 25 0 chrX 23009788 23009828 -139590102 + CT-rich Low_complexity Low_complexity 2 42 0 2223 208 35 4 chrX 23010005 23010457 -139589473 - MLT1C LTR MaLR -1 466 1 6767 89 27 2 chrX 23010493 23011471 -139588459 - L1MA2 LINE L1 0 6304 5303 32 57 0 0 chrX 23011710 23011763 -139588167 + AT_rich Low_complexity Low_complexity 1 53 0 7642 24 0 0 chrX 23012213 23013606 -139586324 - L1PA4 LINE L1 -3 6152 4761 895 181 58 37 chrX 23014900 23015143 -139584787 + L1MC4a LINE L1 5668 5915 -1893 1317 191 61 98 chrX 23015145 23015680 -139584250 - MER39 LTR ERV1 -3 704 5 21 0 0 0 chrX 23015695 23015716 -139584214 + AT_rich Low_complexity Low_complexity 1 21 0 261 376 165 0 chrX 23015864 23016130 -139583800 - L2 LINE L2 -556 2758 2449 248 164 0 73 chrX 23016212 23016267 -139583663 + L2 LINE L2 3222 3272 0 21 0 0 0 chrX 23017510 23017531 -139582399 + AT_rich Low_complexity Low_complexity 1 21 0 392 182 0 0 chrX 23017688 23017754 -139582176 - MLT1H LTR MaLR -3 546 481 261 0 0 0 chrX 23017825 23017854 -139582076 + (TG)n Simple_repeat Simple_repeat 1 29 0 538 258 23 0 chrX 23018100 23018228 -139581702 - MIR SINE MIR -92 170 40 251 191 15 29 chrX 23018264 23018332 -139581598 + MLT1H LTR MaLR 86 152 -397 375 261 102 63 chrX 23018340 23018661 -139581269 + MLT1H LTR MaLR 95 547 -2 2239 120 0 0 chrX 23018759 23019068 -139580862 + AluSx SINE Alu 1 309 -3 242 282 45 27 chrX 23019823 23019933 -139579997 + MER103 DNA DNA 54 165 -1 451 252 108 29 chrX 23020176 23020315 -139579615 + MIR SINE MIR 71 220 -42 408 316 151 5 chrX 23020617 23020829 -139579101 + MIR SINE MIR 12 254 -8 483 253 108 60 chrX 23022164 23022496 -139577434 + L1ME4a LINE L1 5663 6010 -111 25 0 0 0 chrX 23022513 23022538 -139577392 + AT_rich Low_complexity Low_complexity 1 25 0 5717 76 47 7 chrX 23022539 23023350 -139576580 - L1MA1 LINE L1 0 6302 5460 2423 89 23 0 chrX 23023350 23023692 -139576238 - L1PA10 LINE L1 -4 6164 5810 2680 129 4 4 chrX 23023692 23024300 -139575630 - L1MA1 LINE L1 -743 5403 4868 1659 116 9 0 chrX 23024300 23024524 -139575406 - AluSg/x SINE Alu -17 293 68 398 313 115 14 chrX 23024826 23025104 -139574826 - MLT1L LTR MaLR 0 615 310 303 146 0 0 chrX 23025104 23025159 -139574771 + (GA)n Simple_repeat Simple_repeat 2 56 0 254 279 62 62 chrX 23025603 23025811 -139574119 - MLT1J1 LTR MaLR 0 446 239 562 287 20 39 chrX 23025965 23026219 -139573711 - L2 LINE L2 -854 2460 2212 2349 93 0 19 chrX 23026882 23027195 -139572735 + AluSq SINE Alu 1 307 -6 298 361 85 0 chrX 23027316 23027446 -139572484 - L3 LINE CR1 -116 1461 1321 5449 118 7 0 chrX 23027869 23028713 -139571217 - L1PA15 LINE L1 -3 6162 5313 3951 119 2 30 chrX 23028779 23029420 -139570510 - L1PA15 LINE L1 -7 6158 5536 3073 223 56 17 chrX 23029521 23030392 -139569538 - L1MDa LINE L1 -2598 3942 3024 1361 163 17 4 chrX 23030392 23030625 -139569305 + MER46A DNA MER2_type 1 236 0 3073 223 56 17 chrX 23030625 23030763 -139569167 - L1MDa LINE L1 -3516 3024 2893 1192 61 0 25 chrX 23030764 23030927 -139569003 - L1PA14 LINE L1 -2 6159 6001 1138 194 166 2 chrX 23030967 23031365 -139568565 - L1MDa LINE L1 -3989 2551 2089 2312 70 7 0 chrX 23031374 23031660 -139568270 - AluSg SINE Alu -22 288 1 2260 111 38 22 chrX 23031688 23032057 -139567873 + THE1C LTR MaLR 1 375 0 2775 80 3 0 chrX 23032068 23032443 -139567487 + THE1C-int LTR MaLR 1142 1517 -63 1555 87 16 29 chrX 23032443 23032685 -139567245 + THE1C LTR MaLR 137 375 0 3708 182 51 53 chrX 23032690 23033769 -139566161 - L1MDa LINE L1 -4472 2068 992 364 296 104 0 chrX 23033879 23034004 -139565926 + L1M4 LINE L1 3375 3512 -2634 2160 94 17 13 chrX 23034087 23034252 -139565678 - AluSc SINE Alu -8 301 133 2497 74 0 0 chrX 23034252 23034563 -139565367 - AluY SINE Alu 0 311 1 2160 94 17 13 chrX 23034563 23034696 -139565234 - AluSc SINE Alu -176 133 2 1921 164 0 3 chrX 23034977 23035270 -139564660 + AluJo SINE Alu 1 292 -20 2165 113 0 3 chrX 23035790 23036083 -139563847 - AluSx SINE Alu -19 293 2 2488 156 58 21 chrX 23036160 23037127 -139562803 + L1MDa LINE L1 1301 2371 -4169 1442 184 51 7 chrX 23037121 23037415 -139562515 + L1MD2 LINE L1 5837 6143 -216 * 396 218 99 35 chrX 23037421 23037563 -139562367 + L1MD2 LINE L1 6199 6349 -10 28 61 0 0 chrX 23038354 23038403 -139561527 + AT_rich Low_complexity Low_complexity 1 49 0 520 218 4 117 chrX 23039379 23039611 -139560319 + MLT1F1 LTR MaLR 1 212 -355 986 177 16 0 chrX 23039619 23039805 -139560125 - MLT1B LTR MaLR 0 390 202 397 295 0 16 chrX 23040096 23040224 -139559706 - LTR16A1 LTR ERVL -4 453 328 1663 171 72 141 chrX 23040224 23040791 -139559139 + MLT1F LTR MaLR 1 528 -14 294 302 142 45 chrX 23040801 23041069 -139558861 - LTR16C LTR ERVL -126 365 72 183 80 0 0 chrX 23041954 23041979 -139557951 + (CG)n Simple_repeat Simple_repeat 1 25 0 * 234 0 0 0 chrX 23041978 23042004 -139557926 + (CA)n Simple_repeat Simple_repeat 1 26 0 1255 246 102 22 chrX 23042021 23042472 -139557458 + LTR33A LTR ERVL 3 489 -34 193 265 0 0 chrX 23042604 23042653 -139557277 - L2 LINE L2 -11 3261 3213 318 239 0 0 chrX 23043113 23043184 -139556746 + MLT1J LTR MaLR 110 180 -331 24 0 0 0 chrX 23043649 23043673 -139556257 + AT_rich Low_complexity Low_complexity 1 24 0 1969 102 99 34 chrX 23044311 23044663 -139555267 - THE1C LTR MaLR 0 375 1 285 278 125 58 chrX 23045032 23045345 -139554585 - MLT1L LTR MaLR -91 524 191 252 313 18 37 chrX 23045614 23045723 -139554207 - MIR SINE MIR -113 95 21 269 206 0 14 chrX 23046482 23046555 -139553375 + GA-rich Low_complexity Low_complexity 2 73 0 2459 68 7 3 chrX 23046642 23046952 -139552978 + AluY SINE Alu 1 311 0 448 202 20 0 chrX 23047579 23047678 -139552252 - L2 LINE L2 -60 3253 3153 2002 177 23 14 chrX 23047685 23048114 -139551816 - MLT1C LTR MaLR 0 467 35 1769 139 86 15 chrX 23048118 23048457 -139551473 + MLT1B LTR MaLR 28 390 0 975 201 25 7 chrX 23048718 23049002 -139550928 + L1 LINE L1 3055 3343 -2803 919 147 100 5 chrX 23048994 23049184 -139550746 + L1PA16 LINE L1 5953 6160 -6 * 2412 107 19 25 chrX 23049187 23049553 -139550377 - THE1B LTR MaLR 0 364 1 5491 102 13 6 chrX 23049562 23050405 -139549525 + L1PA15 LINE L1 5317 6165 0 523 239 40 40 chrX 23050907 23051083 -139548847 - MIR SINE MIR -10 252 77 816 320 29 72 chrX 23052976 23053395 -139546535 - L2 LINE L2 -3 3269 2869 1552 329 76 58 chrX 23053439 23054789 -139545141 + L2 LINE L2 1290 2662 -652 331 343 49 14 chrX 23054821 23054964 -139544966 + L1ME LINE L1 3 150 -5920 2256 115 3 0 chrX 23055161 23055457 -139544473 + AluSx SINE Alu 1 297 -15 471 265 0 15 chrX 23057619 23057745 -139542185 - MIR3 SINE MIR -54 154 49 571 263 160 0 chrX 23059083 23059239 -139540691 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chrX 23059372 23059393 -139540537 + AT_rich Low_complexity Low_complexity 1 21 0 241 327 44 35 chrX 23059679 23059792 -139540138 - L2 LINE L2 -4 3268 3155 2543 62 0 0 chrX 23060884 23061191 -139538739 + AluY SINE Alu 1 307 -4 483 147 0 119 chrX 23062149 23062258 -139537672 + MER33 DNA MER1_type 5 100 -224 711 353 50 12 chrX 23062360 23062759 -139537171 + L2 LINE L2 2888 3301 -12 786 122 67 0 chrX 23062794 23062958 -139536972 + MER33 DNA MER1_type 150 324 0 27 0 0 0 chrX 23063102 23063129 -139536801 + AT_rich Low_complexity Low_complexity 1 27 0 672 284 96 5 chrX 23063193 23063390 -139536540 + MIR SINE MIR 13 227 -35 23 0 0 0 chrX 23063404 23063427 -139536503 + AT_rich Low_complexity Low_complexity 1 23 0 2385 32 0 3 chrX 23063427 23063709 -139536221 - L1PA5 LINE L1 -7 6147 5867 208 385 98 0 chrX 23064256 23064378 -139535552 - L2 LINE L2 -5 3267 3134 320 328 102 8 chrX 23064455 23064583 -139535347 + L2 LINE L2 3133 3272 0 442 241 82 15 chrX 23064878 23065073 -139534857 - L1ME4a LINE L1 -80 6041 5834 387 331 74 0 chrX 23065073 23065230 -139534700 - MIR3 SINE MIR -55 153 13 2039 158 60 77 chrX 23065230 23065754 -139534176 - L1MA9 LINE L1 -3 6309 5778 8214 102 14 35 chrX 23065754 23066078 -139533852 - HSMAR2 DNA Mariner -2 1300 970 2291 82 20 0 chrX 23066078 23066371 -139533559 + AluSp SINE Alu 1 299 -14 8214 102 14 35 chrX 23066371 23066923 -139533007 - HSMAR2 DNA Mariner -332 970 407 2053 132 0 10 chrX 23066923 23067226 -139532704 - AluSg SINE Alu -10 300 1 2483 53 0 40 chrX 23067228 23067549 -139532381 - AluY SINE Alu -3 308 1 8214 102 14 35 chrX 23067549 23067995 -139531935 - HSMAR2 DNA Mariner -896 406 3 2039 158 60 77 chrX 23067995 23068052 -139531878 - L1MA9 LINE L1 -534 5778 5738 734 284 45 45 chrX 23068154 23068572 -139531358 + L1MC/D LINE L1 5386 5803 -538 4517 151 63 9 chrX 23068613 23069556 -139530374 - L1 LINE L1 -843 6722 5730 * 4941 187 41 16 chrX 23069554 23070626 -139529304 - L1 LINE L1 -6453 1112 14 258 197 14 14 chrX 23071559 23071630 -139528300 - MLT1I LTR MaLR -24 385 315 717 233 73 96 chrX 23071853 23072427 -139527503 - MER34B LTR ERV1 0 565 5 6274 97 6 30 chrX 23072798 23074180 -139525750 + L1PA14 LINE L1 4809 6157 -4 1615 214 79 27 chrX 23074424 23074868 -139525062 + MLT1C LTR MaLR 1 467 0 184 205 13 90 chrX 23075134 23075212 -139524718 + L2 LINE L2 3131 3202 -111 314 86 15 0 chrX 23075212 23075286 -139524644 - AluSq SINE Alu -111 192 153 308 209 55 44 chrX 23075286 23075345 -139524585 + L2 LINE L2 3221 3283 -30 2502 174 24 67 chrX 23075345 23075924 -139524006 + MLT2B3 LTR ERVL 1 554 0 308 209 55 44 chrX 23075924 23075955 -139523975 + L2 LINE L2 3283 3312 -1 304 294 235 6 chrX 23076266 23076436 -139523494 + MIR SINE MIR 20 228 -34 189 356 14 0 chrX 23077581 23077654 -139522276 + MIR SINE MIR 183 256 -6 516 221 0 74 chrX 23077928 23078050 -139521880 + MER2 DNA MER2_type 1 113 -232 1150 103 108 5 chrX 23078153 23078347 -139521583 - MSTA LTR MaLR -214 214 1 1931 171 34 3 chrX 23078347 23078699 -139521231 - MLT2B2 LTR ERVL -152 363 1 2134 125 0 0 chrX 23079132 23079427 -139520503 + AluSx SINE Alu 1 295 -17 261 0 0 0 chrX 23079427 23079456 -139520474 + (CA)n Simple_repeat Simple_repeat 2 30 0 275 179 53 11 chrX 23079693 23079788 -139520142 + GA-rich Low_complexity Low_complexity 2 100 0 893 240 68 42 chrX 23079788 23080333 -139519597 + HAL1 LINE L1 880 1438 -1069 1780 80 0 4 chrX 23080363 23080588 -139519342 - AluSc SINE Alu -13 296 73 848 241 70 34 chrX 23080889 23081329 -139518601 + HAL1 LINE L1 2029 2484 -23 21 0 0 0 chrX 23081341 23081362 -139518568 + AT_rich Low_complexity Low_complexity 1 21 0 657 258 47 38 chrX 23081550 23081763 -139518167 - MIR SINE MIR -46 216 2 552 277 116 56 chrX 23082650 23082852 -139517078 + L1ME3A LINE L1 5103 5326 -820 1870 161 11 11 chrX 23082852 23083201 -139516729 + L1PA16 LINE L1 5811 6159 -7 552 277 116 56 chrX 23083201 23083265 -139516665 + L1ME3A LINE L1 5326 5385 -761 254 237 17 0 chrX 23083265 23083324 -139516606 + (TA)n Simple_repeat Simple_repeat 1 60 0 1393 226 157 6 chrX 23083336 23083827 -139516103 + L1ME3A LINE L1 5383 5947 -223 247 256 62 69 chrX 23083861 23084021 -139515909 + L1ME3A LINE L1 5924 6082 -88 22 35 0 0 chrX 23084025 23084054 -139515876 + AT_rich Low_complexity Low_complexity 1 29 0 890 91 0 38 chrX 23084597 23084783 -139515147 + (TA)n Simple_repeat Simple_repeat 1 179 0 312 158 20 30 chrX 23084860 23084961 -139514969 + (TA)n Simple_repeat Simple_repeat 1 100 0 2177 111 0 0 chrX 23085475 23085793 -139514137 + AluSg SINE Alu 2 319 0 1502 218 118 41 chrX 23085808 23086275 -139513655 - MLT1D LTR MaLR -2 503 1 3013 104 28 13 chrX 23086400 23086862 -139513068 - L1PA16 LINE L1 0 6166 5698 289 180 109 39 chrX 23086997 23087125 -139512805 - Charlie7 DNA MER1_type -49 2563 2427 * 407 181 0 57 chrX 23087092 23087197 -139512733 - Charlie7 DNA MER1_type -2500 112 14 32 26 0 0 chrX 23087393 23087432 -139512498 + AT_rich Low_complexity Low_complexity 1 39 0 529 276 71 36 chrX 23089481 23089677 -139510253 + MIR SINE MIR 50 252 -10 2292 103 0 7 chrX 23090808 23091110 -139508820 + AluSx SINE Alu 1 300 -12 477 278 5 49 chrX 23092380 23092585 -139507345 - MLT1K LTR MaLR 0 588 393 280 264 56 0 chrX 23092971 23093043 -139506887 + MLT1J LTR MaLR 121 196 -315 382 192 44 157 chrX 23093099 23093328 -139506602 + MLT1J LTR MaLR 291 493 -18 962 198 68 65 chrX 23093775 23094116 -139505814 + MLT1H LTR MaLR 5 302 -228 2182 86 0 30 chrX 23094336 23094639 -139505291 - AluY SINE Alu -17 294 1 260 319 0 0 chrX 23094881 23094953 -139504977 - MIR3 SINE MIR -29 179 108 188 225 0 0 chrX 23095090 23095130 -139504800 + MIR SINE MIR 211 250 -12 334 182 57 11 chrX 23095417 23095505 -139504425 - MLT1H LTR MaLR -4 545 454 207 0 0 0 chrX 23095527 23095550 -139504380 + (TTG)n Simple_repeat Simple_repeat 2 24 0 431 252 4 9 chrX 23095751 23095872 -139504058 - MLT1H LTR MaLR -387 162 1 301 341 85 30 chrX 23096188 23096391 -139503539 + L1ME4a LINE L1 4990 5217 -929 752 229 114 30 chrX 23096391 23096627 -139503303 - MIR SINE MIR -3 259 4 301 341 85 30 chrX 23096627 23096728 -139503202 + L1ME4a LINE L1 5217 5311 -835 300 286 178 13 chrX 23096735 23096966 -139502964 + L1ME4a LINE L1 5322 5590 -531 258 156 0 0 chrX 23096976 23097021 -139502909 + (CA)n Simple_repeat Simple_repeat 1 45 0 462 254 91 30 chrX 23097034 23097364 -139502566 + L1ME4a LINE L1 5603 5952 -169 2349 199 47 31 chrX 23098692 23099309 -139500621 + L1ME1 LINE L1 5538 6164 -2 2586 49 0 10 chrX 23099573 23099880 -139500050 + AluY SINE Alu 1 304 -7 2379 92 3 0 chrX 23099885 23100188 -139499742 + AluSp SINE Alu 1 304 -9 196 333 15 111 chrX 23100252 23100387 -139499543 + MIR3 SINE MIR 3 124 -84 668 315 123 26 chrX 23100414 23100805 -139499125 - LTR33 LTR ERVL -69 452 24 29447 97 9 118 chrX 23101270 23103733 -139496197 - L1P4 LINE L1 -602 5563 2834 22337 25 0 0 chrX 23103733 23107165 -139492765 - L1PA4 LINE L1 0 6155 2724 29447 97 9 118 chrX 23107165 23110965 -139488965 - L1P4 LINE L1 -3331 2834 1 1971 239 34 6 chrX 23110966 23111588 -139488342 - L1P LINE L1 -3048 3098 2460 365 365 8 8 chrX 23111607 23111733 -139488197 - L3 LINE CR1 -406 1171 1046 1602 65 0 0 chrX 23111803 23112004 -139487926 - L1PA7 LINE L1 -13 6141 5941 23 54 0 0 chrX 23112335 23112372 -139487558 + AT_rich Low_complexity Low_complexity 1 37 0 1417 161 40 4 chrX 23112431 23112704 -139487226 - L1MB5 LINE L1 0 6174 5892 190 276 46 99 chrX 23112735 23112887 -139487043 + L2 LINE L2 3063 3206 -66 932 263 128 64 chrX 23113140 23113799 -139486131 + HAL1 LINE L1 1765 2465 -42 3073 105 45 0 chrX 23114130 23114579 -139485351 + MER1A DNA MER1_type 61 529 0 292 279 147 79 chrX 23114592 23114857 -139485073 + L2 LINE L2 2914 3196 -76 328 224 20 41 chrX 23114984 23115082 -139484848 - MER94 DNA DNA -19 115 20 22 0 0 0 chrX 23115642 23115664 -139484266 + AT_rich Low_complexity Low_complexity 1 22 0 1565 158 7 39 chrX 23115710 23115989 -139483941 + AluJb SINE Alu 30 299 -13 734 249 109 42 chrX 23117060 23117484 -139482446 + MER57A LTR ERV1 1 401 -2 263 195 11 35 chrX 23118282 23118369 -139481561 + A-rich Low_complexity Low_complexity 5 89 0 2072 230 94 72 chrX 23118901 23119506 -139480424 + HAL1b LINE L1 88 678 -670 2344 99 0 0 chrX 23119506 23119800 -139480130 + AluSx SINE Alu 1 294 -18 2072 230 94 72 chrX 23119800 23119953 -139479977 + HAL1b LINE L1 678 826 -522 2315 94 3 7 chrX 23119953 23120260 -139479670 + AluSx SINE Alu 1 306 -6 2072 230 94 72 chrX 23120260 23120733 -139479197 + HAL1b LINE L1 826 1347 -1 446 313 0 23 chrX 23120785 23120916 -139479014 - L2 LINE L2 -1 3271 3144 398 308 115 23 chrX 23121129 23121352 -139478578 + MIR SINE MIR 20 262 0 1865 155 4 0 chrX 23122638 23122915 -139477015 + AluSx SINE Alu 1 278 -34 203 88 29 0 chrX 23122925 23122959 -139476971 + (GGAGAA)n Simple_repeat Simple_repeat 4 38 0 216 0 0 0 chrX 23122961 23122985 -139476945 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 215 363 94 18 chrX 23123043 23123214 -139476716 - MIR SINE MIR 0 262 79 493 313 88 6 chrX 23124734 23125213 -139474717 + L1MB8 LINE L1 4186 4703 -1443 331 354 73 35 chrX 23125242 23125502 -139474428 + L1MB8 LINE L1 4936 5205 -941 1153 281 88 12 chrX 23125697 23126198 -139473732 + L1MC4a LINE L1 5475 6013 -1795 770 141 0 32 chrX 23126249 23126405 -139473525 + MSTD LTR MaLR 1 151 -245 542 124 0 9 chrX 23126431 23126544 -139473386 + (TC)n Simple_repeat Simple_repeat 2 113 0 2127 45 0 0 chrX 23126654 23126899 -139473031 - AluY SINE Alu -66 245 1 505 86 0 0 chrX 23126899 23126969 -139472961 + MSTD LTR MaLR 327 396 0 26 30 0 0 chrX 23127027 23127060 -139472870 + AT_rich Low_complexity Low_complexity 1 33 0 2326 123 46 0 chrX 23127769 23128142 -139471788 + MLT1B LTR MaLR 1 390 0 552 108 0 0 chrX 23128142 23128225 -139471705 + MLT1B-int LTR MaLR 1 83 -1288 644 185 16 48 chrX 23128502 23128691 -139471239 - MER53 DNA DNA 0 189 7 4310 147 16 34 chrX 23128851 23129636 -139470294 + L1MB8 LINE L1 5342 6112 -66 1865 145 10 40 chrX 23129636 23129939 -139469991 - AluJb SINE Alu -16 296 3 4310 147 16 34 chrX 23129939 23130004 -139469926 + L1MB8 LINE L1 6112 6177 -1 501 240 57 11 chrX 23130651 23130826 -139469104 - L1MC4 LINE L1 -151 7891 7709 214 183 197 28 chrX 23131005 23131076 -139468854 + L2 LINE L2 3230 3312 -1 1040 30 0 30 chrX 23131711 23131846 -139468084 + L1PA5 LINE L1 6024 6154 0 377 305 87 28 chrX 23132515 23132836 -139467094 - L1M4 LINE L1 -1310 4836 4497 782 329 73 8 chrX 23132869 23133668 -139466262 - L1M4 LINE L1 -1806 4340 3490 21 0 0 0 chrX 23133775 23133796 -139466134 + AT_rich Low_complexity Low_complexity 1 21 0 2133 125 3 0 chrX 23134145 23134442 -139465488 - AluSx SINE Alu -14 298 1 213 39 0 0 chrX 23135352 23135378 -139464552 + (T)n Simple_repeat Simple_repeat 1 26 0 1183 111 0 0 chrX 23135393 23135546 -139464384 - AluSq SINE Alu -160 153 1 196 295 135 56 chrX 23135732 23136020 -139463910 + L2 LINE L2 2814 3124 -148 219 146 0 0 chrX 23136547 23136588 -139463342 + (TG)n Simple_repeat Simple_repeat 1 41 0 204 141 127 0 chrX 23137164 23137235 -139462695 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 261 290 16 0 chrX 23137710 23137772 -139462158 - MER91 DNA MER1_type -77 63 1 249 57 0 0 chrX 23138881 23138916 -139461014 + (A)n Simple_repeat Simple_repeat 1 35 0 397 325 8 0 chrX 23139236 23139359 -139460571 + L3b LINE CR1 1114 1237 -346 268 22 22 43 chrX 23139620 23139666 -139460264 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 571 279 9 0 chrX 23139723 23139834 -139460096 + L2 LINE L2 3139 3250 -22 447 288 56 28 chrX 23139837 23140122 -139459808 - L1ME4a LINE L1 -159 5962 5670 928 265 117 25 chrX 23141291 23141358 -139458572 + L2 LINE L2 2921 2980 -333 2153 229 19 14 chrX 23141358 23141874 -139458056 - LTR40a LTR ERVL 0 519 1 928 265 117 25 chrX 23141874 23142165 -139457765 + L2 LINE L2 2980 3312 -1 23 0 0 0 chrX 23142224 23142247 -139457683 + AT_rich Low_complexity Low_complexity 1 23 0 531 186 146 106 chrX 23142491 23142690 -139457240 + MER63A DNA MER1_type 1 207 -3 810 175 55 27 chrX 23142850 23143033 -139456897 - MER5A DNA MER1_type 0 189 2 962 152 5 76 chrX 23144448 23144646 -139455284 + MER5A DNA MER1_type 3 186 -3 470 177 0 0 chrX 23145333 23145412 -139454518 + Tigger5 DNA MER2_type 1 79 -2244 330 218 0 26 chrX 23145414 23145492 -139454438 - Tigger5 DNA MER2_type -6 2317 2242 263 259 0 0 chrX 23145490 23145548 -139454382 + Tigger5 DNA MER2_type 2266 2323 0 * 616 279 11 11 chrX 23145654 23145833 -139454097 + MIR SINE MIR 72 250 -12 233 250 21 0 chrX 23145869 23145965 -139453965 + (CATA)n Simple_repeat Simple_repeat 3 100 0 503 313 66 33 chrX 23146488 23146760 -139453170 + L2 LINE L2 2809 3089 -183 306 195 92 69 chrX 23146766 23146853 -139453077 + L2 LINE L2 3219 3307 -6 234 288 0 0 chrX 23147670 23147729 -139452201 + L2 LINE L2 3214 3272 0 588 204 204 7 chrX 23147997 23148139 -139451791 + MER5A DNA MER1_type 20 189 0 444 271 73 83 chrX 23148257 23148475 -139451455 - LTR67 LTR ERVL -7 550 335 598 212 112 35 chrX 23148503 23148673 -139451257 - MER63A DNA MER1_type -27 183 1 536 231 19 0 chrX 23148831 23148939 -139450991 - MER5B DNA MER1_type 0 178 69 506 85 12 16 chrX 23149066 23149168 -139450762 - L1M1 LINE L1 -606 5549 5449 276 246 15 0 chrX 23149168 23149233 -139450697 - MER5B DNA MER1_type -109 69 4 380 133 89 33 chrX 23149500 23149590 -139450340 + MER5A DNA MER1_type 27 121 -68 301 217 61 70 chrX 23149510 23149625 -139450305 - MER5A DNA MER1_type -26 163 50 * 228 260 211 0 chrX 23150157 23150261 -139449669 - MIR SINE MIR -97 165 40 349 269 124 35 chrX 23150733 23150878 -139449052 - MIR SINE MIR -91 171 14 530 205 87 39 chrX 23150986 23151113 -139448817 - MER5B DNA MER1_type -45 133 1 362 315 41 20 chrX 23151448 23151594 -139448336 + MIR SINE MIR 112 260 -2 21 0 0 0 chrX 23151902 23151923 -139448007 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chrX 23152279 23152306 -139447624 + (A)n Simple_repeat Simple_repeat 1 27 0 214 263 26 26 chrX 23152918 23152994 -139446936 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2436 89 0 3 chrX 23153609 23153913 -139446017 - AluSx SINE Alu -9 303 1 21 0 0 0 chrX 23154889 23154910 -139445020 + AT_rich Low_complexity Low_complexity 1 21 0 466 281 109 21 chrX 23155271 23155463 -139444467 + MIR SINE MIR 9 217 -45 254 308 112 0 chrX 23155710 23155817 -139444113 + L2 LINE L2 3194 3312 -1 203 282 0 0 chrX 23158029 23158068 -139441862 - L2 LINE L2 -24 3248 3210 1396 221 123 17 chrX 23158354 23158761 -139441169 + MLT1J2 LTR MaLR 1 450 0 696 228 13 27 chrX 23158808 23158957 -139440973 + L2 LINE L2 3167 3313 0 2204 110 3 0 chrX 23159205 23159504 -139440426 + AluSx SINE Alu 1 300 -12 1139 237 84 69 chrX 23159601 23160078 -139439852 + LTR33A LTR ERVL 1 484 -39 1680 184 14 35 chrX 23160078 23160447 -139439483 + MLT1A2 LTR MaLR 1 361 -13 251 182 0 0 chrX 23160442 23160486 -139439444 + LTR33A LTR ERVL 480 523 0 * 926 342 130 25 chrX 23160495 23161258 -139438672 + L2 LINE L2 1930 2772 -542 624 250 99 60 chrX 23161398 23161650 -139438280 - MLT1J2 LTR MaLR -157 293 32 260 250 185 11 chrX 23162050 23162153 -139437777 - MIR SINE MIR -67 141 35 198 0 0 0 chrX 23162579 23162601 -139437329 + (GA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chrX 23162600 23162622 -139437308 + (TG)n Simple_repeat Simple_repeat 2 23 0 333 301 45 32 chrX 23163839 23163995 -139435935 + MIR SINE MIR 99 256 -6 380 190 13 0 chrX 23164473 23164552 -139435378 - MER116 DNA Mariner 0 80 1 1139 186 23 5 chrX 23164865 23165080 -139434850 - MER20 DNA MER1_type 0 219 1 198 0 0 0 chrX 23165731 23165753 -139434177 + (T)n Simple_repeat Simple_repeat 1 22 0 704 257 6 23 chrX 23167498 23167669 -139432261 + MER5B DNA MER1_type 7 174 -4 1042 145 56 0 chrX 23167720 23167899 -139432031 - MER5A DNA MER1_type 0 189 1 2097 177 204 25 chrX 23168597 23169152 -139430778 - MLT1E1 LTR MaLR 0 654 1 23 33 0 0 chrX 23170635 23170665 -139429265 + AT_rich Low_complexity Low_complexity 1 30 0 1321 191 78 72 chrX 23171473 23171669 -139428261 - L1MC5 LINE L1 -435 7526 7333 1041 181 38 9 chrX 23171669 23171879 -139428051 + MER20 DNA MER1_type 2 217 -2 1321 191 78 72 chrX 23171879 23172169 -139427761 - L1MC5 LINE L1 -628 7333 7037 551 291 44 11 chrX 23172170 23172361 -139427569 + MIR SINE MIR 8 204 -58 3469 236 87 57 chrX 23172365 23172683 -139427247 - L2 LINE L2 -1 3312 3005 1968 102 3 14 chrX 23172683 23172966 -139426964 + AluSg SINE Alu 1 280 -30 3469 236 87 57 chrX 23172966 23174017 -139425913 - L2 LINE L2 -308 3005 1914 1130 87 11 38 chrX 23374092 23374275 -139225655 - AluSg/x SINE Alu -15 297 120 595 207 9 0 chrX 23374280 23374396 -139225534 - Charlie2a DNA MER1_type -1222 1640 1524 1735 135 6 48 chrX 23374411 23374722 -139225208 + AluJb SINE Alu 1 298 -14 273 119 0 0 chrX 23374753 23374795 -139225135 + (T)n Simple_repeat Simple_repeat 1 42 0 529 200 17 17 chrX 23375167 23375282 -139224648 - Charlie2 DNA MER1_type -2553 309 195 670 153 0 9 chrX 23375286 23375397 -139224533 - FLAM_C SINE Alu -14 129 20 2077 116 0 3 chrX 23375398 23375700 -139224230 + AluSx SINE Alu 1 301 -11 934 129 0 0 chrX 23375801 23375933 -139223997 - FLAM_C SINE Alu -1 132 1 416 294 96 0 chrX 23375945 23376091 -139223839 - Charlie2 DNA MER1_type -2698 164 5 2279 71 3 19 chrX 23376294 23376605 -139223325 + AluSp SINE Alu 1 306 -7 1840 141 30 20 chrX 23377445 23377744 -139222186 + AluJb SINE Alu 1 302 -10 2168 77 3 3 chrX 23378266 23378552 -139221378 + AluSp SINE Alu 1 286 -27 1157 142 19 15 chrX 23378575 23378780 -139221150 - LTR49 LTR ERV1 0 595 390 1250 90 0 11 chrX 23378780 23378958 -139220972 + AluSc SINE Alu 133 308 -1 1799 145 112 22 chrX 23378959 23379324 -139220606 - LTR49 LTR ERV1 -197 398 1 1733 159 3 14 chrX 23379643 23379939 -139219991 + AluJb SINE Alu 2 294 -18 483 212 107 33 chrX 23379965 23380150 -139219780 - MER63 DNA MER1_type 0 1061 1 228 179 0 26 chrX 23380192 23380231 -139219699 + L2 LINE L2 3219 3256 -16 2288 98 0 7 chrX 23380273 23380579 -139219351 + AluSx SINE Alu 2 305 -7 2236 60 0 0 chrX 23380577 23380859 -139219071 + AluY SINE Alu 27 308 -3 * 213 232 18 0 chrX 23380982 23381038 -139218892 + (TTG)n Simple_repeat Simple_repeat 1 57 0 524 251 67 27 chrX 23381285 23381508 -139218422 + L1MC4 LINE L1 6837 7068 -974 815 143 0 0 chrX 23381514 23381633 -139218297 + AluJb SINE Alu 2 120 -192 558 211 72 33 chrX 23381666 23381818 -139218112 + L1MC5 LINE L1 6960 7117 -844 917 120 0 0 chrX 23381835 23381960 -139217970 - FLAM_C SINE Alu -16 127 3 876 199 71 26 chrX 23381962 23382188 -139217742 + L1MC5 LINE L1 7106 7341 -620 2361 75 0 7 chrX 23382304 23382610 -139217320 + AluSx SINE Alu 1 304 -8 2020 129 3 3 chrX 23383098 23383401 -139216529 - AluSx SINE Alu -9 303 1 2520 50 0 0 chrX 23383455 23383756 -139216174 + AluY SINE Alu 1 301 -10 323 244 77 13 chrX 23383758 23383836 -139216094 + MER5B DNA MER1_type 96 178 0 711 244 54 24 chrX 23383974 23384179 -139215751 + MIR SINE MIR 51 261 -1 795 120 0 0 chrX 23384187 23384304 -139215626 - AluSg/x SINE Alu 0 310 194 506 50 0 0 chrX 23384300 23384385 -139215545 + AluSp/q SINE Alu 225 309 0 * 2169 99 0 3 chrX 23384948 23385250 -139214680 - AluSg SINE Alu -7 303 3 1670 156 9 37 chrX 23385280 23385601 -139214329 + AluJo SINE Alu 1 312 0 28 0 0 0 chrX 23385602 23385630 -139214300 + AT_rich Low_complexity Low_complexity 1 28 0 1520 165 60 11 chrX 23386613 23386898 -139213032 + AluJo SINE Alu 1 299 -13 2304 61 0 35 chrX 23386903 23387216 -139212714 + AluY SINE Alu 1 302 -9 2330 55 7 32 chrX 23387509 23387819 -139212111 + AluY SINE Alu 1 302 -9 1917 153 0 0 chrX 23387865 23388160 -139211770 + AluSx SINE Alu 2 296 -16 207 0 0 0 chrX 23390016 23390039 -139209891 + (A)n Simple_repeat Simple_repeat 1 23 0 826 229 149 0 chrX 23391830 23392044 -139207886 + Charlie1 DNA MER1_type 1 246 -2515 440 260 82 111 chrX 23392128 23392300 -139207630 - L1MEc LINE L1 -4461 1754 1630 685 82 122 0 chrX 23392300 23392398 -139207532 - HY1 scRNA scRNA -2 110 1 440 260 82 111 chrX 23392398 23392569 -139207361 - L1MEc LINE L1 -4585 1630 1455 424 198 44 0 chrX 23392586 23392677 -139207253 + Charlie1 DNA MER1_type 159 253 -2508 988 89 0 15 chrX 23392707 23392842 -139207088 - FLAM_C SINE Alu 0 133 1 1757 104 0 12 chrX 23393307 23393566 -139206364 + AluSg SINE Alu 49 304 -6 1955 114 3 23 chrX 23393636 23393942 -139205988 + AluJo SINE Alu 1 300 -12 509 25 51 0 chrX 23394081 23394160 -139205770 + (TA)n Simple_repeat Simple_repeat 2 84 0 1785 112 78 0 chrX 23394160 23394429 -139205501 - AluSx SINE Alu -22 290 1 336 236 14 0 chrX 23394451 23394523 -139205407 - L1MCa LINE L1 -4359 2067 1995 * 426 230 47 0 chrX 23394477 23394575 -139205355 + L1MC4 LINE L1 6571 6646 -1139 207 139 0 0 chrX 23394578 23394614 -139205316 + (TA)n Simple_repeat Simple_repeat 1 36 0 2170 97 3 0 chrX 23394629 23394917 -139205013 - AluSp SINE Alu -24 289 1 1281 131 0 10 chrX 23394919 23395118 -139204812 - AluJo SINE Alu -11 301 105 186 43 0 0 chrX 23395122 23395145 -139204785 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 910 207 83 5 chrX 23395170 23395363 -139204567 - AluJb SINE Alu -89 223 16 252 245 40 146 chrX 23395703 23395756 -139204174 - MIR SINE MIR -38 224 167 2200 102 0 0 chrX 23395756 23396051 -139203879 - AluSx SINE Alu -17 295 1 1931 122 0 45 chrX 23396055 23396223 -139203707 - AluSx SINE Alu -14 298 149 2079 110 10 0 chrX 23396223 23396523 -139203407 - AluSp SINE Alu -10 303 1 1931 122 0 45 chrX 23396523 23396666 -139203264 - AluSx SINE Alu -163 149 1 1615 188 3 7 chrX 23396669 23396961 -139202969 - AluJo SINE Alu -21 291 1 252 245 40 146 chrX 23396961 23397049 -139202881 - MIR SINE MIR -100 162 90 2180 86 10 0 chrX 23397140 23397432 -139202498 - AluSx SINE Alu -17 295 1 1702 150 29 69 chrX 23397450 23397630 -139202300 - L1M3 LINE L1 -513 5658 5472 1428 162 3 81 chrX 23397630 23397963 -139201967 - AluJo SINE Alu -5 307 1 1702 150 29 69 chrX 23397963 23398121 -139201809 - L1M3 LINE L1 -699 5472 5334 1716 154 27 7 chrX 23398121 23398414 -139201516 - AluSx SINE Alu -13 299 1 1702 150 29 69 chrX 23398414 23398453 -139201477 - L1M3 LINE L1 -837 5334 5295 2150 107 3 0 chrX 23398458 23398758 -139201172 - AluSx SINE Alu -10 302 2 297 273 121 10 chrX 23398763 23398862 -139201068 - L2 LINE L2 -14 3258 3149 1270 166 0 0 chrX 23399151 23399350 -139200580 + AluJo SINE Alu 5 203 -109 1813 143 3 44 chrX 23399409 23399573 -139200357 - AluJo SINE Alu -4 308 162 2119 112 0 0 chrX 23399573 23399867 -139200063 + AluSc SINE Alu 1 294 -15 1813 143 3 44 chrX 23399867 23400023 -139199907 - AluJo SINE Alu -150 162 1 1907 137 23 13 chrX 23400331 23400637 -139199293 + AluSx SINE Alu 1 309 -3 354 320 46 26 chrX 23400695 23400848 -139199082 - L2 LINE L2 0 3313 3158 2023 121 6 10 chrX 23401563 23401876 -139198054 + AluSx SINE Alu 1 312 0 266 296 80 0 chrX 23401880 23401968 -139197962 - L2 LINE L2 -20 3252 3158 233 65 0 0 chrX 23401985 23402016 -139197914 - MIR SINE MIR -120 142 112 2067 79 4 4 chrX 23402094 23402371 -139197559 - AluSq SINE Alu -36 277 1 231 196 0 18 chrX 23402374 23402430 -139197500 - L1 LINE L1 -978 5168 5114 988 180 51 0 chrX 23402430 23402608 -139197322 - MLT1E LTR MaLR -406 187 1 432 0 0 0 chrX 23402609 23402657 -139197273 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1715 128 0 58 chrX 23402735 23402931 -139196999 - AluSx SINE Alu -17 295 122 2280 85 0 3 chrX 23402931 23403236 -139196694 - AluSq SINE Alu -9 304 1 1715 128 0 58 chrX 23403236 23403351 -139196579 - AluSx SINE Alu -190 122 2 303 291 107 10 chrX 23403352 23403455 -139196475 - L2 LINE L2 -11 3261 3149 1724 126 53 0 chrX 23403745 23404030 -139195900 + AluSx SINE Alu 5 304 -8 1000 119 0 65 chrX 23404035 23404223 -139195707 + AluSg/x SINE Alu 126 302 0 1793 117 4 4 chrX 23404775 23405040 -139194890 - AluSx SINE Alu -47 265 1 2117 70 7 11 chrX 23405142 23405460 -139194470 + AluSg SINE Alu 1 317 0 1702 59 0 18 chrX 23405460 23405682 -139194248 + AluSc SINE Alu 72 289 -20 7867 163 122 37 chrX 23405982 23407600 -139192330 + MER52A LTR ERV1 1 1755 0 455 78 16 0 chrX 23407991 23408055 -139191875 + MER41A LTR ERV1 400 464 -90 2149 128 0 0 chrX 23408055 23408367 -139191563 + AluSx SINE Alu 1 312 0 582 254 98 29 chrX 23408613 23408818 -139191112 + MIR SINE MIR 38 256 -6 1019 128 0 0 chrX 23409350 23409499 -139190431 - AluSg/x SINE Alu -6 306 158 833 92 0 0 chrX 23409499 23409608 -139190322 - AluSc SINE Alu -198 111 3 350 267 95 0 chrX 23409657 23409773 -139190157 - L2 LINE L2 0 3313 3187 2248 108 0 3 chrX 23409892 23410198 -139189732 + AluSx SINE Alu 1 305 -7 2205 98 0 3 chrX 23410198 23410494 -139189436 + AluSg SINE Alu 1 295 -15 1651 144 31 24 chrX 23410497 23410788 -139189142 + AluJb SINE Alu 1 293 -19 1157 269 43 34 chrX 23411201 23411226 -139188704 - L1ME LINE L1 -402 5760 5737 936 116 12 6 chrX 23411226 23411390 -139188540 + (TTTC)n Simple_repeat Simple_repeat 3 167 0 2049 101 0 3 chrX 23411390 23411671 -139188259 - AluSx SINE Alu -32 280 1 1157 269 43 34 chrX 23411671 23412065 -139187865 - L1ME LINE L1 -425 5737 5348 2047 106 7 7 chrX 23412065 23412366 -139187564 - AluSx SINE Alu -11 301 1 1157 269 43 34 chrX 23412366 23412565 -139187365 - L1ME LINE L1 -814 5348 5135 1793 147 7 3 chrX 23412565 23412857 -139187073 + AluJo SINE Alu 1 293 -19 307 254 58 87 chrX 23412870 23413008 -139186922 - L1ME LINE L1 -3663 2483 2350 2159 96 13 0 chrX 23413025 23413327 -139186603 - AluSq SINE Alu -7 306 1 23 0 0 0 chrX 23413329 23413352 -139186578 + AT_rich Low_complexity Low_complexity 1 23 0 1028 114 13 0 chrX 23413356 23413531 -139186399 - AluJb SINE Alu 0 308 132 2028 96 0 4 chrX 23413539 23413854 -139186076 - AluSg SINE Alu 0 314 1 445 37 0 0 chrX 23414776 23414830 -139185100 + MADE1 DNA Mariner 27 80 0 486 227 106 28 chrX 23414855 23414996 -139184934 + MIR SINE MIR 71 222 -40 2077 123 3 0 chrX 23415033 23415325 -139184605 - AluSx SINE Alu -19 293 1 2017 101 0 17 chrX 23415423 23415745 -139184185 + AluSq SINE Alu 3 319 0 546 186 59 0 chrX 23416216 23416334 -139183596 - MER96B DNA MER1_type? 0 417 293 315 208 0 0 chrX 23416328 23416381 -139183549 - MER96B DNA MER1_type? -364 53 1 * 230 287 168 86 chrX 23416760 23416893 -139183037 + L3 LINE CR1 1150 1271 -306 2101 89 0 4 chrX 23416893 23417199 -139182731 + AluY SINE Alu 1 305 0 230 287 168 86 chrX 23417199 23417331 -139182599 + L3 LINE CR1 1271 1439 -138 1917 139 13 3 chrX 23417388 23417690 -139182240 - AluJb SINE Alu -7 305 1 240 284 159 0 chrX 23418094 23418182 -139181748 + MIR SINE MIR 40 141 -67 1637 140 32 0 chrX 23418204 23418454 -139181476 - AluJb SINE Alu -54 258 1 1949 128 0 33 chrX 23418707 23419013 -139180917 - AluSx SINE Alu -13 299 4 2205 102 3 0 chrX 23419088 23419392 -139180538 - AluSp SINE Alu -8 305 1 1152 306 30 66 chrX 23419625 23419823 -139180107 + HERVL LTR ERVL 4153 4357 -1297 1887 124 7 0 chrX 23419823 23420118 -139179812 - AluSx SINE Alu 0 302 6 1152 306 30 66 chrX 23420118 23420461 -139179469 + HERVL LTR ERVL 4357 4675 -979 1312 162 97 0 chrX 23420475 23420703 -139179227 - MLT1E1 LTR MaLR 0 654 405 2195 107 0 0 chrX 23420731 23421039 -139178891 - AluSx SINE Alu -4 308 1 1070 277 56 56 chrX 23421660 23422086 -139177844 + LTR16B LTR ERVL 2 427 -37 2014 138 0 0 chrX 23422210 23422515 -139177415 - AluSx SINE Alu -7 305 1 2157 130 0 3 chrX 23422561 23422868 -139177062 - AluSq SINE Alu -7 306 1 875 83 33 8 chrX 23422912 23423032 -139176898 - AluSg/x SINE Alu -12 298 176 1412 109 0 0 chrX 23423096 23423289 -139176641 + AluSq SINE Alu 121 313 0 2235 109 3 3 chrX 23423360 23423664 -139176266 - AluSx SINE Alu -8 304 1 233 277 18 62 chrX 23423782 23423894 -139176036 + MLT1K LTR MaLR 164 270 -318 704 130 35 0 chrX 23424111 23424226 -139175704 - MER1B DNA MER1_type -120 177 59 1862 151 17 0 chrX 23424285 23424576 -139175354 - AluSq SINE Alu -17 296 1 1368 288 66 14 chrX 23424780 23425266 -139174664 + MLT1J LTR MaLR 1 511 0 2332 93 7 0 chrX 23425524 23425824 -139174106 + AluSx SINE Alu 5 306 -6 780 230 139 64 chrX 23425847 23426205 -139173725 - MLT1G3 LTR MaLR -33 497 97 2404 106 0 0 chrX 23426205 23426506 -139173424 - AluSx SINE Alu -11 301 1 780 230 139 64 chrX 23426506 23426611 -139173319 - MLT1G3 LTR MaLR -433 97 1 348 295 36 18 chrX 23427531 23427643 -139172287 - L2 LINE L2 0 3313 3200 2232 100 0 0 chrX 23427669 23427974 -139171956 - AluSx SINE Alu 0 305 1 559 165 18 0 chrX 23428165 23428274 -139171656 - MER20 DNA MER1_type -51 168 58 2241 110 0 10 chrX 23428719 23429020 -139170910 - AluSx SINE Alu -14 298 1 1237 146 27 5 chrX 23429431 23429650 -139170280 - L1MB2 LINE L1 -266 5905 5682 2419 85 0 0 chrX 23429672 23429967 -139169963 + AluSc SINE Alu 1 295 -14 532 77 121 0 chrX 23429971 23430062 -139169868 - L1MB8 LINE L1 -11 6167 6066 357 208 94 10 chrX 23430105 23430201 -139169729 + MLT2C1 LTR ERVL 14 117 -280 311 124 0 50 chrX 23430187 23430203 -139169727 + AluSc SINE Alu 118 133 -166 * 2330 88 3 10 chrX 23430203 23430511 -139169419 + AluSx SINE Alu 1 306 -6 311 124 0 50 chrX 23430511 23430561 -139169369 + AluSc SINE Alu 133 170 -129 239 227 155 41 chrX 23430581 23430678 -139169252 + MLT1E3 LTR MaLR 127 234 -390 * 815 219 12 62 chrX 23430605 23430861 -139169069 + MLT2C1 LTR ERVL 153 395 -2 1385 191 102 57 chrX 23430867 23431044 -139168886 - L1MC3 LINE L1 -743 5403 5235 1819 166 25 0 chrX 23431044 23431327 -139168603 - AluJo SINE Alu -22 290 1 1385 191 102 57 chrX 23431327 23431736 -139168194 - L1MC3 LINE L1 -911 5235 4846 2047 133 14 3 chrX 23431736 23432030 -139167900 + AluSx SINE Alu 1 297 -15 1385 191 102 57 chrX 23432030 23432046 -139167884 - L1MC3 LINE L1 -1300 4846 5319 2426 77 0 10 chrX 23432046 23432210 -139167720 - AluSx SINE Alu -15 297 136 2147 109 28 0 chrX 23432210 23432494 -139167436 - AluSx SINE Alu -20 292 1 2426 77 0 10 chrX 23432494 23432629 -139167301 - AluSx SINE Alu -176 136 1 1385 191 102 57 chrX 23432629 23432735 -139167195 - L1MC3 LINE L1 -826 5320 5220 969 149 0 0 chrX 23432749 23432890 -139167040 - FLAM_C SINE Alu -1 142 2 1622 154 85 7 chrX 23432890 23433162 -139166768 - AluJo SINE Alu -19 293 1 751 208 32 74 chrX 23433162 23433378 -139166552 - L1MC3 LINE L1 -943 5203 4997 1240 251 47 73 chrX 23433940 23434205 -139165725 - MER68 LTR ERV1 -37 525 280 2129 126 20 0 chrX 23434205 23434498 -139165432 - AluJb SINE Alu -13 299 1 1240 251 47 73 chrX 23434498 23434767 -139165163 - MER68 LTR ERV1 -282 280 5 2302 78 3 7 chrX 23434900 23435193 -139164737 - AluSx SINE Alu -20 292 1 350 241 12 0 chrX 23435341 23435424 -139164506 - MLT1J LTR MaLR -328 183 100 1819 182 23 7 chrX 23435532 23435839 -139164091 + AluJo SINE Alu 1 312 0 846 121 0 0 chrX 23435849 23435965 -139163965 + FLAM_C SINE Alu 1 116 -17 2448 92 0 0 chrX 23436068 23436374 -139163556 + AluSg SINE Alu 1 306 -4 864 171 0 0 chrX 23436390 23436530 -139163400 + FLAM_C SINE Alu 1 140 -3 24 0 0 0 chrX 23436530 23436554 -139163376 + AT_rich Low_complexity Low_complexity 1 24 0 2272 132 0 0 chrX 23437101 23437411 -139162519 + AluSx SINE Alu 1 310 -2 1942 91 42 4 chrX 23437959 23438222 -139161708 - AluSq SINE Alu -7 306 34 1832 228 101 6 chrX 23438474 23438969 -139160961 + MER34 LTR ERV1 1 542 0 536 177 28 14 chrX 23439033 23439174 -139160756 + CT-rich Low_complexity Low_complexity 4 146 0 2320 101 3 0 chrX 23439188 23439485 -139160445 - AluSq SINE Alu -15 298 1 1937 158 7 3 chrX 23439486 23439784 -139160146 - AluJb SINE Alu -13 299 1 2342 92 0 7 chrX 23440067 23440370 -139159560 - AluSg SINE Alu -9 301 1 2290 47 61 0 chrX 23440379 23440656 -139159274 - AluY SINE Alu -17 294 1 2177 92 58 0 chrX 23440719 23441011 -139158919 - AluSc SINE Alu 0 309 1 347 248 0 35 chrX 23441572 23441713 -139158217 + AluSg/x SINE Alu 167 302 0 1908 116 26 33 chrX 23441749 23442052 -139157878 + AluSx SINE Alu 1 301 -11 270 56 0 0 chrX 23442063 23442099 -139157831 + (TG)n Simple_repeat Simple_repeat 2 37 0 2382 71 0 0 chrX 23442099 23442381 -139157549 - AluSc SINE Alu -27 282 1 2430 70 0 52 chrX 23442455 23442782 -139157148 - AluSg SINE Alu 0 310 1 2375 102 0 0 chrX 23443201 23443506 -139156424 - AluSx SINE Alu -7 305 1 1732 72 0 42 chrX 23443571 23443617 -139156313 + L1M3 LINE L1 5571 5617 -554 1772 189 0 13 chrX 23443617 23443919 -139156011 + AluJo SINE Alu 2 299 -13 1732 72 0 42 chrX 23443919 23444135 -139155795 + L1M3 LINE L1 5617 5822 -349 839 129 8 8 chrX 23444151 23444275 -139155655 + FLAM_C SINE Alu 9 132 -11 2064 141 32 0 chrX 23444275 23444622 -139155308 + L1MB2 LINE L1 5814 6171 0 241 351 27 0 chrX 23444623 23444734 -139155196 - LTR67 LTR ERVL -15 542 429 2191 101 16 29 chrX 23445679 23445986 -139153944 - AluSx SINE Alu -9 303 1 207 0 0 0 chrX 23446067 23446090 -139153840 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 685 147 10 0 chrX 23446090 23446192 -139153738 + AluSg SINE Alu 2 104 -206 265 177 0 0 chrX 23446623 23446685 -139153245 + T-rich Low_complexity Low_complexity 1 62 0 274 284 0 0 chrX 23448664 23448752 -139151178 - L1MEc LINE L1 -4997 1399 1312 2396 86 0 16 chrX 23448858 23449173 -139150757 - AluY SINE Alu -1 310 1 2395 111 0 0 chrX 23449392 23449698 -139150232 + AluSx SINE Alu 1 306 -6 838 62 15 0 chrX 23450538 23450668 -139149262 + (TGGG)n Simple_repeat Simple_repeat 2 133 0 2191 92 58 0 chrX 23451379 23451671 -139148259 - AluSc SINE Alu 0 309 1 2237 65 7 24 chrX 23451770 23452061 -139147869 - AluY SINE Alu -25 286 1 281 261 0 39 chrX 23452609 23452789 -139147141 + G-rich Low_complexity Low_complexity 2 174 0 675 199 14 28 chrX 23452802 23453224 -139146706 + GA-rich Low_complexity Low_complexity 1 416 0 1845 209 16 16 chrX 23453372 23453746 -139146184 + MLT1A2 LTR MaLR 1 374 0 281 250 5 11 chrX 23454052 23454247 -139145683 + C-rich Low_complexity Low_complexity 1 193 0 2299 105 7 3 chrX 23454516 23454820 -139145110 + AluSx SINE Alu 1 305 -7 1031 207 28 28 chrX 23455931 23456182 -139143748 - AluJo SINE Alu -51 261 11 1075 180 64 9 chrX 23456191 23456424 -139143506 + MLT1A2-int LTR MaLR 1485 1730 -5 385 250 52 0 chrX 23456436 23456532 -139143398 + MLT1A2 LTR MaLR 1 101 -273 423 181 29 14 chrX 23456602 23456740 -139143190 + CT-rich Low_complexity Low_complexity 4 143 0 265 222 5 53 chrX 23456810 23456999 -139142931 + C-rich Low_complexity Low_complexity 1 180 0 1898 272 58 22 chrX 23457204 23457843 -139142087 + L1MEc LINE L1 115 776 -5620 506 243 7 29 chrX 23457880 23458189 -139141741 + C-rich Low_complexity Low_complexity 1 301 0 524 232 40 0 chrX 23458321 23458446 -139141484 - L1MC5 LINE L1 -726 7235 7106 1774 143 49 18 chrX 23458448 23458734 -139141196 + AluJb SINE Alu 3 297 -15 1754 134 0 11 chrX 23460609 23460870 -139139060 + AluJb SINE Alu 40 297 -15 315 292 145 65 chrX 23461178 23461579 -139138351 - L1 LINE L1 -2833 3313 2881 2264 110 3 0 chrX 23461780 23462081 -139137849 - AluSg SINE Alu -8 302 1 1944 130 3 10 chrX 23462133 23462433 -139137497 - AluSx SINE Alu -14 298 1 2594 68 3 0 chrX 23462688 23462996 -139136934 + AluSg SINE Alu 1 309 -1 708 132 0 0 chrX 23463040 23463146 -139136784 - FLAM_C SINE Alu -10 133 28 2344 94 16 3 chrX 23463700 23464009 -139135921 - AluSq SINE Alu 0 313 1 376 274 73 76 chrX 23464126 23464443 -139135487 + MLT1K LTR MaLR 164 479 -109 470 285 30 45 chrX 23465075 23465275 -139134655 + L2 LINE L2 3112 3308 -5 711 169 33 87 chrX 23465404 23465526 -139134404 + MER5B DNA MER1_type 1 111 -67 2376 86 7 0 chrX 23465526 23465828 -139134102 - AluSx SINE Alu -8 304 1 711 169 33 87 chrX 23465828 23465888 -139134042 + MER5B DNA MER1_type 111 173 -5 381 58 0 0 chrX 23467182 23467234 -139132696 + (TC)n Simple_repeat Simple_repeat 1 52 0 2069 127 3 3 chrX 23467465 23467757 -139132173 + AluSx SINE Alu 1 292 -20 1272 148 5 0 chrX 23468084 23468301 -139131629 - L1M2 LINE L1 -631 5681 5464 1286 51 6 0 chrX 23468308 23468466 -139131464 - L1PA3 LINE L1 -2 6153 5995 465 19 0 0 chrX 23468676 23468730 -139131200 + (TG)n Simple_repeat Simple_repeat 2 55 0 2167 110 14 0 chrX 23469038 23469328 -139130602 + AluSx SINE Alu 2 295 -17 1839 135 49 17 chrX 23469632 23469920 -139130010 - AluJb SINE Alu -15 297 1 810 217 9 74 chrX 23469973 23470190 -139129740 - MIR SINE MIR 0 262 60 2009 109 65 0 chrX 23470193 23470468 -139129462 - AluSq SINE Alu -20 293 1 2157 128 10 0 chrX 23470828 23471117 -139128813 - AluSx SINE Alu -20 292 1 284 254 0 0 chrX 23471065 23471124 -139128806 - AluYa8 SINE Alu -115 185 127 2489 70 3 0 chrX 23471277 23471577 -139128353 + AluY SINE Alu 1 301 -10 2205 113 0 0 chrX 23472102 23472413 -139127517 - AluSx SINE Alu -1 311 1 1954 141 0 0 chrX 23472606 23472905 -139127025 - AluJb SINE Alu -11 301 3 185 331 63 63 chrX 23473212 23473387 -139126543 - L2 LINE L2 -93 3220 3046 1680 105 116 8 chrX 23474173 23474440 -139125490 - AluSg1 SINE Alu 0 309 14 1918 83 12 0 chrX 23474440 23474694 -139125236 - AluSg1 SINE Alu -8 301 45 2172 82 3 0 chrX 23475383 23475689 -139124241 + AluSq SINE Alu 1 307 0 1197 102 11 6 chrX 23475689 23475866 -139124064 + AluSg/x SINE Alu 126 303 -9 186 261 63 84 chrX 23476472 23476614 -139123316 - MIR SINE MIR -26 236 98 628 242 104 91 chrX 23476861 23477457 -139122473 - L1MC4 LINE L1 -8 8033 7351 236 336 10 10 chrX 23477544 23477648 -139122282 + CT-rich Low_complexity Low_complexity 4 107 0 189 74 0 0 chrX 23477802 23477829 -139122101 + (TA)n Simple_repeat Simple_repeat 1 27 0 2170 102 7 3 chrX 23477946 23478250 -139121680 - AluSx SINE Alu -7 305 1 791 118 30 7 chrX 23478670 23478805 -139121125 - L1MB8 LINE L1 0 6178 6041 2293 80 7 0 chrX 23479051 23479351 -139120579 + AluSp SINE Alu 1 302 -11 234 182 0 0 chrX 23479462 23479506 -139120424 - L1MC4 LINE L1 -15 8027 7984 2340 80 0 0 chrX 23479513 23479814 -139120116 + AluY SINE Alu 1 301 -10 2453 191 119 31 chrX 23479815 23481000 -139118930 - L1MC4 LINE L1 -140 7902 6459 736 161 16 0 chrX 23481306 23481430 -139118500 - FLAM_C SINE Alu -7 126 1 2121 108 3 0 chrX 23481430 23481727 -139118203 - AluSq SINE Alu -15 298 1 208 222 12 74 chrX 23481728 23481809 -139118121 - L3b LINE CR1 -313 1270 1195 1528 167 4 0 chrX 23481819 23482076 -139117854 + AluJo SINE Alu 1 258 -54 239 339 75 17 chrX 23482149 23482323 -139117607 + L2 LINE L2 1527 1710 -1604 2061 87 31 0 chrX 23482324 23482610 -139117320 + AluSx SINE Alu 1 295 -17 1148 141 0 0 chrX 23482610 23482787 -139117143 + AluSg/x SINE Alu 132 308 -2 307 349 169 0 chrX 23482925 23483186 -139116744 + L2 LINE L2 1848 2152 -1162 181 57 57 0 chrX 23483208 23483243 -139116687 + T-rich Low_complexity Low_complexity 3 39 0 2120 72 0 4 chrX 23483250 23483527 -139116403 - AluSq SINE Alu -37 276 1 35 56 0 34 chrX 23483532 23483621 -139116309 + AT_rich Low_complexity Low_complexity 1 86 0 1943 115 7 3 chrX 23483622 23483908 -139116022 - AluJo SINE Alu -25 287 1 263 176 88 55 chrX 23483911 23483948 -139115982 - L1MB3 LINE L1 0 6183 6149 2087 131 0 0 chrX 23483948 23484254 -139115676 - AluSx SINE Alu -6 306 1 263 176 88 55 chrX 23484254 23484307 -139115623 - L1MB3 LINE L1 -34 6149 6090 282 359 39 44 chrX 23484368 23484491 -139115439 + L2 LINE L2 2173 2296 -1018 1489 178 10 20 chrX 23484491 23484655 -139115275 - AluJo SINE Alu -13 299 138 1831 148 3 3 chrX 23484655 23484953 -139114977 - AluJb SINE Alu -14 298 1 1489 178 10 20 chrX 23484953 23485086 -139114844 - AluJo SINE Alu -174 138 5 282 359 39 44 chrX 23485086 23485143 -139114787 + L2 LINE L2 2296 2352 -962 1742 184 7 3 chrX 23485153 23485462 -139114468 - AluJo SINE Alu -2 310 1 2168 62 48 0 chrX 23485819 23486108 -139113822 - AluSc SINE Alu -6 303 1 270 222 32 0 chrX 23486128 23486191 -139113739 + MIR SINE MIR 184 248 -14 223 265 20 88 chrX 23486451 23486553 -139113377 + MIR3 SINE MIR 112 206 -2 2308 91 0 0 chrX 23486864 23487161 -139112769 - AluSq SINE Alu -16 297 1 345 260 114 24 chrX 23487179 23487302 -139112628 + HAL1b LINE L1 1191 1324 -24 451 211 26 0 chrX 23487906 23487982 -139111948 - MER2 DNA MER2_type 0 345 268 1987 112 3 7 chrX 23488050 23488359 -139111571 + AluSx SINE Alu 1 308 0 675 148 0 0 chrX 23488369 23488470 -139111460 - AluJb SINE Alu -194 118 18 1154 147 0 49 chrX 23488478 23488682 -139111248 - MER2 DNA MER2_type -146 199 6 * 2010 207 25 18 chrX 23488678 23489127 -139110803 - MLT1C LTR MaLR -15 452 1 2390 41 10 0 chrX 23489310 23489601 -139110329 + AluY SINE Alu 1 294 -17 2035 93 107 19 chrX 23489636 23489946 -139109984 + MER1B DNA MER1_type 1 337 0 1853 141 7 0 chrX 23490158 23490455 -139109475 - AluSx SINE Alu -13 299 1 2472 56 0 3 chrX 23490514 23490819 -139109111 - AluY SINE Alu -7 304 1 614 276 40 48 chrX 23491104 23491332 -139108598 + MIR SINE MIR 16 241 -21 2088 118 0 0 chrX 23491340 23491637 -139108293 - AluSx SINE Alu -15 297 1 24 0 0 0 chrX 23491641 23491665 -139108265 + AT_rich Low_complexity Low_complexity 1 24 0 190 393 54 29 chrX 23491905 23492147 -139107783 + L2 LINE L2 2539 2786 -528 1838 134 3 13 chrX 23492155 23492289 -139107641 + AluJb SINE Alu 3 137 -175 1986 120 3 7 chrX 23492289 23492590 -139107340 + AluSg SINE Alu 1 300 -10 1838 134 3 13 chrX 23492590 23492753 -139107177 + AluJb SINE Alu 137 297 -15 934 123 175 76 chrX 23492958 23493169 -139106761 + MER46A DNA MER2_type 2 233 -3 505 184 194 0 chrX 23493493 23493596 -139106334 - L2 LINE L2 -3 3310 3188 447 291 82 19 chrX 23493614 23493772 -139106158 - L2 LINE L2 -1 3312 3145 340 293 75 42 chrX 23493778 23493990 -139105940 - MER20 DNA MER1_type 0 219 1 1591 169 35 17 chrX 23494530 23494820 -139105110 + AluJb SINE Alu 3 297 -15 1201 116 145 5 chrX 23494856 23495063 -139104867 - MER46A DNA MER2_type 0 236 1 1505 176 7 23 chrX 23495387 23495693 -139104237 - AluJo SINE Alu -11 301 1 213 248 72 96 chrX 23495693 23495818 -139104112 + L2 LINE L2 3145 3266 -6 213 39 0 0 chrX 23495869 23495895 -139104035 + (T)n Simple_repeat Simple_repeat 1 26 0 1601 133 0 12 chrX 23495898 23496147 -139103783 - AluSx SINE Alu -66 246 1 367 177 81 50 chrX 23496330 23496520 -139103410 - L1MC5 LINE L1 -30 7931 7696 2085 116 0 0 chrX 23496522 23496823 -139103107 + AluSx SINE Alu 1 301 -11 692 106 0 19 chrX 23496828 23496932 -139102998 + L1MB8 LINE L1 6077 6178 0 2223 98 0 16 chrX 23497018 23497325 -139102605 - AluSq SINE Alu -11 302 1 475 245 89 49 chrX 23497336 23498029 -139101901 - L1MC5 LINE L1 -438 7532 6992 1835 153 0 10 chrX 23498092 23498406 -139101524 - AluSx SINE Alu -1 311 1 876 169 6 44 chrX 23498408 23498591 -139101339 - AluJb SINE Alu -3 309 134 1646 133 92 0 chrX 23498591 23498862 -139101068 - AluSq SINE Alu -8 305 10 1377 232 60 6 chrX 23498877 23499226 -139100704 - L1MC4 LINE L1 -975 7067 6700 1812 147 0 10 chrX 23499252 23499544 -139100386 + AluSx SINE Alu 1 289 -23 2175 112 0 0 chrX 23500029 23500332 -139099598 - AluSq SINE Alu -10 303 1 1307 229 104 54 chrX 23500414 23500882 -139099048 - L1MC4 LINE L1 0 8042 7540 2417 70 3 6 chrX 23500882 23501196 -139098734 - AluSp SINE Alu 0 313 1 1307 229 104 54 chrX 23501196 23501285 -139098645 - L1MC4 LINE L1 -502 7540 7457 21 36 0 0 chrX 23501570 23501598 -139098332 + AT_rich Low_complexity Low_complexity 1 28 0 2072 82 7 14 chrX 23501673 23501986 -139097944 - AluSc SINE Alu 0 311 1 1491 135 13 74 chrX 23502116 23502428 -139097502 - AluJo SINE Alu -19 293 1 2290 83 7 0 chrX 23502862 23503164 -139096766 - AluSp SINE Alu -9 304 1 2211 81 3 7 chrX 23503164 23503459 -139096471 - AluSx SINE Alu -18 294 1 2397 54 0 32 chrX 23504962 23505275 -139094655 + AluY SINE Alu 1 303 -8 2054 79 22 7 chrX 23505824 23506102 -139093828 + AluSc SINE Alu 1 282 -27 216 0 0 0 chrX 23506102 23506126 -139093804 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 699 264 34 53 chrX 23506534 23506799 -139093131 - MIR SINE MIR 0 262 3 1643 133 76 0 chrX 23506891 23507155 -139092775 + AluJo SINE Alu 1 284 -28 385 267 86 65 chrX 23507468 23507807 -139092123 - L1MC/D LINE L1 -321 5800 5443 1524 147 20 65 chrX 23507814 23507967 -139091963 + AluJo SINE Alu 2 137 -175 4587 128 47 42 chrX 23507967 23508089 -139091841 - LTR25 LTR ERV1 0 794 674 1990 85 68 4 chrX 23508089 23508370 -139091560 + AluSp SINE Alu 1 299 -14 4587 128 47 42 chrX 23508370 23509037 -139090893 - LTR25 LTR ERV1 -120 674 1 1524 147 20 65 chrX 23509037 23509175 -139090755 + AluJo SINE Alu 137 280 -32 2255 76 0 0 chrX 23509476 23509766 -139090164 + AluSx SINE Alu 1 290 -22 372 122 84 93 chrX 23510236 23510343 -139089587 - MLT1H1 LTR MaLR -81 474 369 2304 85 0 0 chrX 23510399 23510704 -139089226 - AluSx SINE Alu -7 305 1 2248 105 0 0 chrX 23510728 23511032 -139088898 - AluSg SINE Alu -2 308 5 1707 137 47 4 chrX 23511232 23511510 -139088420 + AluJo SINE Alu 1 290 -22 795 86 0 0 chrX 23511518 23511623 -139088307 + AluSq/x SINE Alu 2 106 -207 1756 153 3 0 chrX 23511623 23511905 -139088025 + AluJb SINE Alu 19 301 -11 692 229 32 54 chrX 23511910 23512173 -139087757 - MIR SINE MIR 0 262 8 2071 99 3 23 chrX 23512336 23512639 -139087291 - AluSx SINE Alu -15 297 1 1809 128 7 7 chrX 23512730 23513020 -139086910 + AluSx SINE Alu 1 290 -22 2263 68 0 0 chrX 23513038 23513316 -139086614 + AluSg SINE Alu 2 279 -31 373 83 14 14 chrX 23513318 23513390 -139086540 + (TA)n Simple_repeat Simple_repeat 2 73 0 479 221 40 34 chrX 23513446 23513595 -139086335 - MER112 DNA MER1_type -101 159 10 236 109 0 22 chrX 23513782 23513828 -139086102 + (CCCCCA)n Simple_repeat Simple_repeat 4 48 0 1925 140 0 7 chrX 23514005 23514312 -139085618 - AluJb SINE Alu -7 305 1 1917 130 0 7 chrX 23514672 23514977 -139084953 - AluJb SINE Alu 0 303 1 360 295 101 16 chrX 23514993 23515122 -139084808 + L2 LINE L2 3133 3272 0 1575 121 71 0 chrX 23515230 23515469 -139084461 + AluSx SINE Alu 1 256 -56 27 0 0 0 chrX 23515475 23515502 -139084428 + AT_rich Low_complexity Low_complexity 1 27 0 441 178 2 0 chrX 23515711 23515794 -139084136 + MER21A LTR ERV1 1 84 -779 3268 136 19 159 chrX 23515889 23516935 -139082995 + MER21A LTR ERV1 70 911 -20 1910 170 0 0 chrX 23516941 23517253 -139082677 - AluJb SINE Alu 0 312 1 213 211 0 0 chrX 23517271 23517328 -139082602 + (TA)n Simple_repeat Simple_repeat 1 57 0 695 134 0 0 chrX 23517358 23517455 -139082475 - AluSx SINE Alu -20 289 193 1158 89 0 0 chrX 23517456 23517602 -139082328 - AluSx SINE Alu -167 146 1 1905 122 7 3 chrX 23518098 23518386 -139081544 - AluSx SINE Alu -23 289 1 2235 89 0 0 chrX 23518405 23518698 -139081232 - AluSp SINE Alu -20 293 1 2273 84 0 0 chrX 23518715 23519011 -139080919 - AluSx SINE Alu -16 296 1 961 189 31 45 chrX 23519161 23519293 -139080637 - MER20 DNA MER1_type 0 219 90 2407 43 0 16 chrX 23519293 23519596 -139080334 - AluY SINE Alu -13 298 1 961 189 31 45 chrX 23519596 23519685 -139080245 - MER20 DNA MER1_type -129 90 1 2245 115 0 0 chrX 23519982 23520287 -139079643 + AluSx SINE Alu 1 305 -7 195 193 250 0 chrX 23520373 23520461 -139079469 + L2 LINE L2 3199 3308 -5 729 157 0 0 chrX 23520579 23520694 -139079236 + FRAM SINE Alu 9 123 -53 1774 158 28 0 chrX 23521135 23521419 -139078511 + AluJb SINE Alu 1 292 -20 670 264 88 42 chrX 23521826 23522065 -139077865 + MIR SINE MIR 10 259 -3 183 42 0 0 chrX 23522787 23522811 -139077119 + (A)n Simple_repeat Simple_repeat 1 24 0 274 219 96 0 chrX 23523703 23523776 -139076154 - L2 LINE L2 -44 3269 3190 2258 110 0 3 chrX 23523824 23524123 -139075807 + AluSx SINE Alu 1 298 -14 2406 59 7 23 chrX 23524559 23524864 -139075066 - AluY SINE Alu -11 300 1 243 167 0 125 chrX 23525465 23525537 -139074393 - U2 snRNA snRNA -125 63 1 180 0 0 0 chrX 23525748 23525768 -139074162 + (TA)n Simple_repeat Simple_repeat 1 20 0 923 136 0 27 chrX 23525777 23525924 -139074006 - FLAM_C SINE Alu 0 143 1 210 71 0 0 chrX 23526356 23526384 -139073546 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 43 0 21 chrX 23526538 23526563 -139073367 + AT_rich Low_complexity Low_complexity 1 26 -20 2124 138 0 0 chrX 23526563 23526860 -139073070 - AluJb SINE Alu -15 297 1 22 43 0 21 chrX 23526860 23526881 -139073049 + AT_rich Low_complexity Low_complexity 26 46 0 1815 125 38 79 chrX 23527045 23527364 -139072566 + L1MB8 LINE L1 5803 6133 -45 2460 52 7 13 chrX 23527364 23527670 -139072260 - AluY SINE Alu -7 304 1 1635 153 0 75 chrX 23527675 23528009 -139071921 - AluJo SINE Alu -3 309 1 1815 125 38 79 chrX 23528009 23528075 -139071855 + L1MB8 LINE L1 6137 6178 0 501 301 33 11 chrX 23528352 23528535 -139071395 + MIR3 SINE MIR 16 202 -6 2123 94 0 21 chrX 23528611 23528921 -139071009 - AluSc SINE Alu 0 304 1 2084 114 38 3 chrX 23528926 23529215 -139070715 - AluSx SINE Alu -13 299 1 1834 161 0 13 chrX 23529661 23529965 -139069965 - AluJo SINE Alu -12 300 1 2370 91 0 0 chrX 23529974 23530270 -139069660 - AluSx SINE Alu -16 296 1 434 191 0 91 chrX 23530298 23530327 -139069603 - Tigger5 DNA MER2_type 0 2323 2293 2198 117 20 0 chrX 23530327 23530627 -139069303 - AluSx SINE Alu -6 306 1 434 191 0 91 chrX 23530627 23530707 -139069223 - Tigger5 DNA MER2_type -30 2293 2224 311 184 0 0 chrX 23530701 23530750 -139069180 - Tigger5 DNA MER2_type -2268 55 7 * 248 274 176 0 chrX 23530805 23530907 -139069023 - L1ME LINE L1 -392 5729 5610 1287 131 103 0 chrX 23531072 23531286 -139068644 - MER46A DNA MER2_type 0 236 1 1064 171 42 26 chrX 23531570 23531763 -139068167 + AluJo SINE Alu 86 281 -31 1976 158 0 3 chrX 23531810 23532107 -139067823 - AluJb SINE Alu -16 296 1 22 35 0 0 chrX 23532107 23532136 -139067794 + AT_rich Low_complexity Low_complexity 1 29 0 2379 75 3 26 chrX 23532448 23532756 -139067174 - AluSp SINE Alu -12 301 1 426 231 90 34 chrX 23532830 23533045 -139066885 - L1ME LINE L1 -509 5612 5372 22 56 0 0 chrX 23533047 23533083 -139066847 + AT_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chrX 23533906 23533956 -139065974 + AT_rich Low_complexity Low_complexity 1 50 0 439 192 0 0 chrX 23534559 23534637 -139065293 - MER112 DNA MER1_type -175 85 8 2282 99 0 10 chrX 23534831 23535135 -139064795 - AluSx SINE Alu -11 301 1 2285 72 7 0 chrX 23536327 23536603 -139063327 - AluSc SINE Alu -9 300 23 1728 210 60 7 chrX 23537175 23537608 -139062322 - Charlie4a DNA MER1_type -27 481 26 2246 100 0 25 chrX 23538651 23538971 -139060959 - AluSx SINE Alu 0 312 1 2332 79 0 26 chrX 23539382 23539687 -139060243 + AluSg SINE Alu 1 297 -13 186 143 0 0 chrX 23540938 23540973 -139058957 + (CAG)n Simple_repeat Simple_repeat 3 37 0 881 173 69 0 chrX 23541465 23541667 -139058263 - L1MA7 LINE L1 -2 6289 6074 324 126 34 193 chrX 23541668 23541787 -139058143 + L1MA7 LINE L1 5976 6075 -216 21 0 0 0 chrX 23541965 23541986 -139057944 + AT_rich Low_complexity Low_complexity 1 21 0 1428 73 11 0 chrX 23542777 23542956 -139056974 - AluSg SINE Alu 0 312 132 421 59 0 0 chrX 23542956 23543007 -139056923 - AluSg SINE Alu -245 64 14 2634 72 62 13 chrX 23543077 23543100 -139056830 - L1MA3 LINE L1 -7 6298 6278 264 100 0 0 chrX 23543100 23543140 -139056790 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 2634 72 62 13 chrX 23543140 23543504 -139056426 - L1MA3 LINE L1 -27 6278 5892 207 254 0 0 chrX 23544553 23544608 -139055322 - MER5B DNA MER1_type -4 174 120 2262 110 0 0 chrX 23544609 23544909 -139055021 + AluSx SINE Alu 3 302 -10 2194 110 0 10 chrX 23544967 23545266 -139054664 - AluSg SINE Alu -14 296 1 489 299 7 14 chrX 23545370 23545517 -139054413 + MIR SINE MIR 11 156 -106 592 235 69 9 chrX 23545538 23545709 -139054221 + MLT1F LTR MaLR 70 229 -338 1952 170 38 32 chrX 23545719 23547285 -139052645 - L1MB7 LINE L1 0 6180 4957 386 200 90 0 chrX 23547288 23547388 -139052542 - L2 LINE L2 -16 3297 3189 6080 113 41 22 chrX 23547795 23548746 -139051184 + LTR5 LTR ERVK 1 969 0 1287 246 24 3 chrX 23548988 23549281 -139050649 + MLT1F LTR MaLR 190 488 -54 1100 234 11 0 chrX 23549292 23549553 -139050377 - L1MB7 LINE L1 -12 6172 5909 455 182 23 0 chrX 23549593 23549681 -139050249 + L1M4 LINE L1 5629 5718 -466 22 0 0 0 chrX 23550723 23550745 -139049185 + AT_rich Low_complexity Low_complexity 1 22 0 861 167 0 0 chrX 23550752 23550890 -139049040 - FLAM_C SINE Alu -5 138 1 2312 43 47 0 chrX 23550982 23551261 -139048669 - AluY SINE Alu -4 307 16 2237 129 0 0 chrX 23551320 23551623 -139048307 - AluJb SINE Alu -9 303 1 2191 120 0 0 chrX 23552598 23552889 -139047041 - AluSg SINE Alu -19 291 1 318 340 93 19 chrX 23553107 23553269 -139046661 + HERVL40 LTR ERVL 3509 3682 -1848 2294 100 0 3 chrX 23553736 23554035 -139045895 - AluSq SINE Alu -15 298 1 519 139 0 0 chrX 23556667 23556753 -139043177 + L1MA4 LINE L1 6215 6300 0 20707 73 6 0 chrX 23556776 23559427 -139040503 + L1P LINE L1 1 2665 -3481 744 33 0 0 chrX 23559427 23559518 -139040412 + L1P LINE L1 2873 2963 -3183 1731 63 5 18 chrX 23559742 23559963 -139039967 - AluSc SINE Alu -20 289 72 306 0 0 0 chrX 23559963 23559997 -139039933 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2276 84 3 3 chrX 23559997 23560283 -139039647 - AluSp SINE Alu -27 286 1 383 206 28 28 chrX 23560293 23560400 -139039530 + MIR3 SINE MIR 51 157 -51 2456 82 0 0 chrX 23560689 23560992 -139038938 + AluSx SINE Alu 1 303 -9 180 0 0 0 chrX 23561151 23561171 -139038759 + (TG)n Simple_repeat Simple_repeat 1 20 0 2073 126 3 0 chrX 23561171 23561451 -139038479 - AluSx SINE Alu -31 281 1 1714 131 75 11 chrX 23561482 23561749 -139038181 + AluJo SINE Alu 1 284 -28 547 268 31 55 chrX 23562047 23562301 -139037629 - MIR SINE MIR 0 262 15 2491 80 0 0 chrX 23562404 23562704 -139037226 + AluSg1 SINE Alu 1 300 -9 899 338 20 27 chrX 23563147 23563550 -139036380 + L1PA13 LINE L1 39 438 -6349 1403 144 39 0 chrX 23563791 23564020 -139035910 + MSTA LTR MaLR 1 238 -190 1774 48 0 0 chrX 23564020 23564228 -139035702 - THE1-int LTR MaLR -1142 438 231 4043 161 52 13 chrX 23564334 23565098 -139034832 - L1M2b LINE L1 -6374 835 42 1202 271 37 9 chrX 23565886 23566214 -139033716 + L1M2 LINE L1 850 1186 -5663 585 314 13 0 chrX 23566220 23566379 -139033551 - REP3 LTR ERV -376 186 26 1199 230 7 4 chrX 23566847 23567121 -139032809 + L1M2 LINE L1 3262 3536 -3312 8007 167 34 5 chrX 23567238 23568019 -139031911 + L1M2 LINE L1 4155 4912 -1936 192 77 0 0 chrX 23568019 23568045 -139031885 + (CA)n Simple_repeat Simple_repeat 1 26 0 8007 167 34 5 chrX 23568045 23568817 -139031113 + L1M2 LINE L1 4912 5752 -1096 1886 122 3 64 chrX 23569168 23569480 -139030450 - AluSx SINE Alu -19 293 1 414 153 0 0 chrX 23571842 23571901 -139028029 - Alu SINE Alu -18 292 234 686 184 47 80 chrX 23571938 23572163 -139027767 - MLT1C LTR MaLR 0 467 201 2351 72 0 14 chrX 23572535 23572826 -139027104 - AluSx SINE Alu -9 303 17 2146 110 3 7 chrX 23573836 23574135 -139025795 - AluSx SINE Alu -12 300 3 3768 143 7 3 chrX 23574605 23575173 -139024757 - L1PB3 LINE L1 -2 6152 5583 851 130 0 0 chrX 23575629 23575767 -139024163 + L1 LINE L1 4695 4832 -1314 2918 125 55 11 chrX 23575817 23576273 -139023657 + L1PA15 LINE L1 5687 6162 -3 2165 238 85 17 chrX 23576274 23577101 -139022829 + L1M4 LINE L1 2786 3668 -2478 1241 212 39 4 chrX 23577614 23577845 -139022085 + MER8 DNA MER2_type 1 239 0 1778 146 14 31 chrX 23578630 23578924 -139021006 - AluJo SINE Alu -23 289 1 1427 99 28 28 chrX 23582143 23582354 -139017576 + AluSg/x SINE Alu 85 295 -17 2293 149 6 8 chrX 23582355 23582717 -139017213 - MSTA LTR MaLR -67 361 1 2748 138 11 42 chrX 23582717 23582945 -139016985 - L1PB4 LINE L1 -21 6135 5928 2229 116 0 0 chrX 23582945 23583239 -139016691 + AluSg SINE Alu 1 294 -16 2748 138 11 42 chrX 23583239 23583488 -139016442 - L1PB4 LINE L1 -228 5928 5673 196 288 25 50 chrX 23583612 23583692 -139016238 - MER5B DNA MER1_type -98 80 3 2331 73 0 17 chrX 23584888 23585189 -139014741 - AluY SINE Alu -15 296 1 777 175 0 0 chrX 23585200 23585320 -139014610 - L1PB4 LINE L1 -8 6148 6029 36059 49 3 3 chrX 23585420 23590641 -139009289 + L1PA5 LINE L1 933 6148 -6 300 281 21 0 chrX 23590742 23590838 -139009092 - L1ME LINE L1 -278 5843 5746 2505 53 0 3 chrX 23591257 23591557 -139008373 + AluY SINE Alu 1 299 -12 859 138 31 0 chrX 23591570 23591700 -139008230 + AluJb SINE Alu 164 297 -15 438 92 15 0 chrX 23591704 23591769 -139008161 + L1PA16 LINE L1 6083 6148 -18 496 122 0 0 chrX 23591784 23591858 -139008072 + L1PB4 LINE L1 6078 6151 -5 3949 36 0 0 chrX 23592411 23592854 -139007076 - L1PA5 LINE L1 -4 6150 5708 1950 162 0 3 chrX 23593239 23593529 -139006401 + AluJb SINE Alu 1 289 -23 1083 270 20 20 chrX 23595714 23596010 -139003920 - REP3 LTR ERV -266 296 1 5090 148 40 15 chrX 23596675 23597412 -139002518 + L1MA9 LINE L1 5407 6171 -141 240 35 0 0 chrX 23597412 23597441 -139002489 + (CA)n Simple_repeat Simple_repeat 2 30 0 5090 148 40 15 chrX 23597441 23597579 -139002351 + L1MA9 LINE L1 6171 6304 -8 1951 143 43 70 chrX 23597986 23598384 -139001546 + MLT1B LTR MaLR 1 387 -3 960 133 78 0 chrX 23598531 23598697 -139001233 + L1MA9 LINE L1 5917 6095 -217 2471 72 0 16 chrX 23599691 23599997 -138999933 + AluSp SINE Alu 1 301 -12 19539 43 2 0 chrX 23601053 23604089 -138995841 - L1PA5 LINE L1 -6 6148 3111 1353 126 0 0 chrX 23604191 23604389 -138995541 - L1P4 LINE L1 -399 5767 5570 301 91 0 0 chrX 23604390 23604434 -138995496 + L1MA1 LINE L1 6153 6196 -106 3823 159 11 37 chrX 23605106 23605267 -138994663 - L1MA4A LINE L1 -24 6279 6115 2317 88 7 0 chrX 23605267 23605563 -138994367 - AluSg SINE Alu -12 298 1 3823 159 11 37 chrX 23605563 23606214 -138993716 - L1MA4A LINE L1 -188 6115 5427 1689 130 78 82 chrX 23606214 23606628 -138993302 + THE1B LTR MaLR 1 389 -39 2186 115 0 3 chrX 23606628 23606924 -138993006 - AluSx SINE Alu -17 295 1 1689 130 78 82 chrX 23606924 23606964 -138992966 + THE1B LTR MaLR 389 428 0 1660 137 31 0 chrX 23606964 23607346 -138992584 - L1M1 LINE L1 -743 5403 5042 297 367 48 5 chrX 23607525 23607732 -138992198 + MIR SINE MIR 19 234 -28 180 286 82 0 chrX 23608571 23608620 -138991310 - L2 LINE L2 -253 3060 3008 2171 102 3 3 chrX 23609083 23609398 -138990532 + AluSx SINE Alu 1 315 0 637 53 11 21 chrX 23609811 23609906 -138990024 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 506 179 42 11 chrX 23609909 23610004 -138989926 - MLT1B LTR MaLR -46 459 362 * 659 136 45 9 chrX 23609999 23610109 -138989821 - MLT1D LTR MaLR -17 488 375 869 85 0 0 chrX 23610116 23610222 -138989708 + AluSq/x SINE Alu 5 110 -203 880 271 9 18 chrX 23610968 23611189 -138988741 + REP3 LTR ERV 1 219 -343 23 0 0 0 chrX 23611443 23611466 -138988464 + AT_rich Low_complexity Low_complexity 1 23 0 380 340 0 7 chrX 23611586 23611733 -138988197 - L1M4c LINE L1 -6176 208 63 814 165 8 0 chrX 23613048 23613181 -138986749 - AluJo SINE Alu -178 134 1 2991 68 3 3 chrX 23614881 23615236 -138984694 - THE1A LTR MaLR 0 355 1 377 276 8 8 chrX 23617720 23617847 -138982083 - L1M4c LINE L1 -6225 159 33 364 299 54 14 chrX 23617882 23618103 -138981827 - Charlie2 DNA MER1_type -2487 295 66 2275 104 3 0 chrX 23618545 23618844 -138981086 - AluSx SINE Alu -12 300 1 1878 159 16 29 chrX 23620062 23620370 -138979560 - AluJo SINE Alu -7 305 2 642 130 19 0 chrX 23620439 23620547 -138979383 - L1MA6 LINE L1 0 6300 6191 1072 195 17 17 chrX 23620989 23621225 -138978705 + MLT1F LTR MaLR 256 491 -51 4044 182 41 5 chrX 23621243 23622325 -138977605 - L1MB7 LINE L1 -41 6143 5025 2014 107 0 40 chrX 23622841 23623141 -138976789 - AluSx SINE Alu -24 288 1 2218 50 0 0 chrX 23623514 23623775 -138976155 - AluY SINE Alu -50 261 1 761 247 34 84 chrX 23625076 23625396 -138974534 - MLT1B LTR MaLR -86 304 1 965 283 14 11 chrX 23626291 23626567 -138973363 + REP3 LTR ERV 26 302 -260 2299 108 0 3 chrX 23627207 23627513 -138972417 + AluSx SINE Alu 1 305 -7 4438 135 23 61 chrX 23627884 23628474 -138971456 - LTR39 LTR ERV1 0 783 230 1846 158 0 3 chrX 23628474 23628796 -138971134 - AluJb SINE Alu 0 321 1 4438 135 23 61 chrX 23628796 23629018 -138970912 - LTR39 LTR ERV1 -553 230 1 2053 120 7 0 chrX 23631325 23631601 -138968329 + AluSc SINE Alu 1 278 -31 345 100 0 0 chrX 23631603 23631653 -138968277 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 257 287 60 46 chrX 23632747 23632851 -138967079 - Charlie2 DNA MER1_type -2516 266 165 2358 85 47 49 chrX 23632851 23633216 -138966714 + THE1B LTR MaLR 1 364 0 257 287 60 46 chrX 23633216 23633327 -138966603 - Charlie2 DNA MER1_type -2617 165 48 1115 181 49 86 chrX 23633907 23634232 -138965698 - MLT1B LTR MaLR 0 390 78 6161 92 33 2 chrX 23637794 23638744 -138961186 + L1MA2 LINE L1 5326 6304 0 8824 158 12 5 chrX 23640572 23642307 -138957623 - L1PB1 LINE L1 -7 6144 4379 549 0 0 0 chrX 23642307 23642368 -138957562 + (TTTTA)n Simple_repeat Simple_repeat 2 62 0 8824 158 12 5 chrX 23642368 23643353 -138956577 - L1PB1 LINE L1 -1772 4379 3402 503 242 8 16 chrX 23643422 23643546 -138956384 - L1ME2 LINE L1 -32 6132 6010 452 116 0 14 chrX 23643692 23643761 -138956169 + AluJ/FRAM SINE Alu 228 295 -17 218 354 44 18 chrX 23643761 23643874 -138956056 + MIR3 SINE MIR 79 194 -14 264 30 0 0 chrX 23644443 23644476 -138955454 + (CA)n Simple_repeat Simple_repeat 1 33 0 437 297 88 52 chrX 23645565 23645814 -138954116 + MLT1I LTR MaLR 114 371 -38 377 182 13 0 chrX 23645920 23645997 -138953933 + MER112 DNA MER1_type 3 80 -180 206 207 17 17 chrX 23645998 23646056 -138953874 + (TA)n Simple_repeat Simple_repeat 1 58 0 379 220 70 86 chrX 23646058 23646244 -138953686 + MER112 DNA MER1_type 78 260 0 232 368 0 0 chrX 23646760 23646847 -138953083 - MIR3 SINE MIR -18 190 104 1044 349 137 30 chrX 23646940 23647722 -138952208 + L2 LINE L2 392 1308 -2006 1633 181 42 25 chrX 23647722 23648081 -138951849 - MLT1A1 LTR MaLR 0 365 1 1044 349 137 30 chrX 23648081 23648309 -138951621 + L2 LINE L2 1308 1510 -1804 5985 104 23 2 chrX 23648464 23649374 -138950556 + L1P LINE L1 1 929 -5217 477 0 0 0 chrX 23649782 23649835 -138950095 + (CA)n Simple_repeat Simple_repeat 2 54 0 1549 181 49 88 chrX 23649868 23650300 -138949630 + MLT1C LTR MaLR 53 467 0 6867 188 88 13 chrX 23650387 23651870 -138948060 + L1M1 LINE L1 22 1616 -5949 14977 158 19 16 chrX 23651884 23652675 -138947255 + L1M1 LINE L1 2652 3439 -4285 2040 123 6 50 chrX 23652675 23652993 -138946937 + AluSx SINE Alu 1 304 -8 14977 158 19 16 chrX 23652993 23655289 -138944641 + L1M1 LINE L1 3439 5766 -1958 2161 95 0 0 chrX 23655289 23655563 -138944367 + AluSc SINE Alu 1 274 -35 14977 158 19 16 chrX 23655563 23656813 -138943117 + L1M1 LINE L1 5766 7010 -714 958 193 5 11 chrX 23656813 23657000 -138942930 + AluJo SINE Alu 121 306 -6 4601 93 10 21 chrX 23657007 23657714 -138942216 + L1MA3 LINE L1 5599 6297 -8 5439 110 28 6 chrX 23657798 23658653 -138941277 + Tigger1 DNA MER2_type 1545 2418 0 5338 159 17 26 chrX 23659213 23659893 -138940037 - L1MA10 LINE L1 -8 6326 5659 2249 89 34 0 chrX 23659893 23660185 -138939745 + AluSx SINE Alu 1 302 -10 5338 159 17 26 chrX 23660185 23660814 -138939116 - L1MA10 LINE L1 -675 5659 5026 340 333 51 88 chrX 23661324 23661675 -138938255 + L2 LINE L2 2511 2848 -466 224 264 179 60 chrX 23661682 23661883 -138938047 + L2 LINE L2 3008 3232 -81 280 211 48 58 chrX 23662993 23663097 -138936833 - L1MA8 LINE L1 -12 6279 6177 * 626 122 73 0 chrX 23663095 23663218 -138936712 + L1MA8 LINE L1 6042 6173 -118 968 285 72 42 chrX 23663301 23663802 -138936128 - LTR33 LTR ERVL -4 517 2 703 184 152 6 chrX 23664026 23664184 -138935746 + MER5A DNA MER1_type 9 189 0 2101 74 0 67 chrX 23664936 23665248 -138934682 + AluSc SINE Alu 1 291 -18 597 173 60 0 chrX 23665490 23665623 -138934307 + LTR16C LTR ERVL 351 491 0 440 219 95 0 chrX 23665760 23665865 -138934065 + L2 LINE L2 3189 3303 -10 1943 171 154 47 chrX 23667228 23667766 -138932164 - LTR4 LTR ERV1 0 596 1 412 141 0 0 chrX 23668800 23668864 -138931066 - Tigger7 DNA MER2_type -28 2559 2496 * 2927 165 37 2 chrX 23668858 23669366 -138930564 - Tigger7 DNA MER2_type -1961 526 1 831 255 99 37 chrX 23669420 23669856 -138930074 + MLT1J LTR MaLR 40 502 -9 4228 152 47 28 chrX 23720476 23720530 -138879400 + L1PB4 LINE L1 5266 5317 -839 2028 131 7 10 chrX 23720530 23720821 -138879109 + AluSx SINE Alu 3 292 -20 4228 152 47 28 chrX 23720821 23721637 -138878293 + L1PB4 LINE L1 5317 6153 -3 774 255 6 0 chrX 23721637 23721794 -138878136 - MIR SINE MIR -99 163 6 2146 179 54 7 chrX 23722197 23722604 -138877326 + MSTB LTR MaLR 1 426 0 2079 176 56 0 chrX 23723403 23723886 -138876044 - L1 LINE L1 -1377 5471 4962 * 3033 204 15 4 chrX 23723882 23723907 -138876023 - L1 LINE L1 -4360 2489 2466 234 0 0 0 chrX 23723907 23723933 -138875997 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3033 204 15 4 chrX 23723933 23724626 -138875304 - L1 LINE L1 -4383 2466 1763 40574 51 3 1 chrX 23724627 23730761 -138869169 - L1PA4 LINE L1 -14 6141 1 4823 236 27 22 chrX 23730766 23731925 -138868005 - L1 LINE L1 -5075 1774 610 225 0 0 0 chrX 23731941 23731966 -138867964 + (CAG)n Simple_repeat Simple_repeat 3 27 0 2092 215 108 14 chrX 23732095 23732611 -138867319 + MLT1F1 LTR MaLR 3 567 0 21 0 0 0 chrX 23732655 23732676 -138867254 + AT_rich Low_complexity Low_complexity 1 21 0 206 374 136 7 chrX 23733155 23733302 -138866628 - L2 LINE L2 0 3272 3107 229 206 0 0 chrX 23733302 23733365 -138866565 + L1M4 LINE L1 5021 5083 -1063 3990 111 8 28 chrX 23733366 23733460 -138866470 + L1PA16 LINE L1 5395 5489 -677 2233 122 3 0 chrX 23733460 23733771 -138866159 + AluSx SINE Alu 1 312 0 3990 111 8 28 chrX 23733771 23734345 -138865585 + L1PA16 LINE L1 5489 6049 -117 668 167 0 0 chrX 23734343 23734457 -138865473 - L1M2 LINE L1 -5390 1459 1346 * 509 90 0 0 chrX 23734462 23734540 -138865390 + L1PA16 LINE L1 6080 6157 -9 696 290 50 5 chrX 23734692 23734892 -138865038 + MER63A DNA MER1_type 2 210 0 10534 163 44 14 chrX 23735273 23737159 -138862771 + L1MA6 LINE L1 18 1960 -5605 2471 132 16 43 chrX 23737159 23737530 -138862400 + MSTB LTR MaLR 1 361 -65 844 138 0 0 chrX 23737530 23737666 -138862264 + FLAM_C SINE Alu 1 136 0 2471 132 16 43 chrX 23737666 23737731 -138862199 + MSTB LTR MaLR 361 426 0 8934 167 29 6 chrX 23737735 23739344 -138860586 + MSTB-int LTR MaLR 5 1651 0 2117 155 39 55 chrX 23739344 23739455 -138860475 + MSTB LTR MaLR 1 112 -314 1139 179 117 68 chrX 23739455 23739884 -138860046 - LTR7 LTR ERV1 0 450 1 2117 155 39 55 chrX 23739884 23739974 -138859956 + MSTB LTR MaLR 112 202 -224 2239 89 0 33 chrX 23739974 23740276 -138859654 + AluY SINE Alu 1 292 -19 2117 155 39 55 chrX 23740276 23740506 -138859424 + MSTB LTR MaLR 202 426 0 8624 180 43 46 chrX 23740506 23743122 -138856808 + L1MA6 LINE L1 1956 4579 -2986 3910 98 5 3 chrX 23743122 23743695 -138856235 + L1PB1 LINE L1 5576 6149 -2 8624 180 43 46 chrX 23743695 23744027 -138855903 + L1MA6 LINE L1 4579 4911 -2654 275 83 0 0 chrX 23744027 23744063 -138855867 + U2 snRNA snRNA 1 36 -152 8624 180 43 46 chrX 23744063 23745217 -138854713 + L1MA6 LINE L1 4911 6098 -1467 5164 106 25 5 chrX 23745224 23746014 -138853916 + L1MA3 LINE L1 5496 6301 -4 231 330 119 34 chrX 23746038 23746156 -138853774 - L2 LINE L2 -16 3256 3129 241 317 98 30 chrX 23746540 23746704 -138853226 + MER5B DNA MER1_type 4 178 0 481 274 20 51 chrX 23747730 23748033 -138851897 - L1MC/D LINE L1 -546 5811 5518 359 313 34 60 chrX 23748067 23748335 -138851595 - L1MC/D LINE L1 -935 5447 5187 405 59 0 0 chrX 23748999 23749050 -138850880 + 5S rRNA rRNA 1 51 -70 1055 130 10 10 chrX 23749104 23749311 -138850619 + L1MA7 LINE L1 6085 6291 0 1666 214 6 18 chrX 23749364 23749696 -138850234 - MLT1H1 LTR MaLR 0 555 228 1247 291 58 6 chrX 23749751 23750161 -138849769 - L1MC/D LINE L1 -2677 3705 3247 2190 137 0 0 chrX 23750161 23750468 -138849462 - AluSg SINE Alu -3 307 1 1247 291 58 6 chrX 23750468 23750709 -138849221 - L1MC/D LINE L1 -3135 3247 3020 5482 163 15 13 chrX 23750738 23752310 -138847620 + L1MA6 LINE L1 6146 7713 -6 1117 243 42 33 chrX 23752340 23752950 -138846980 - L1MC/D LINE L1 -3743 2639 2025 1190 241 89 26 chrX 23752952 23753326 -138846604 - L1MC/D LINE L1 -4480 1904 1494 1505 158 4 0 chrX 23753326 23753604 -138846326 - L1MA4 LINE L1 -5 6295 6017 1190 241 89 26 chrX 23753604 23753690 -138846240 - L1MC/D LINE L1 -4890 1494 1415 5908 140 9 21 chrX 23753715 23754954 -138844976 - L1MA2 LINE L1 0 7723 6500 17981 50 5 3 chrX 23755001 23759153 -138840777 - L1PA4 LINE L1 -5 6150 1843 2796 16 0 0 chrX 23759153 23759464 -138840466 + AluY SINE Alu 1 311 0 17981 50 5 3 chrX 23759464 23759636 -138840294 - L1PA4 LINE L1 -4312 1843 1673 8298 101 16 0 chrX 23759634 23760862 -138839068 - L1PA4 LINE L1 -4896 1250 3 * 6542 187 22 15 chrX 23760862 23761235 -138838695 - L1MA2 LINE L1 -2359 5206 4837 2228 88 0 13 chrX 23761235 23761541 -138838389 + AluY SINE Alu 3 304 -7 6542 187 22 15 chrX 23761541 23763063 -138836867 - L1MA2 LINE L1 -2728 4837 3306 3037 242 53 53 chrX 23763063 23764219 -138835711 - L1M4 LINE L1 -4863 1679 524 227 292 26 35 chrX 23764543 23764656 -138835274 + MIR SINE MIR 54 165 -97 746 209 43 12 chrX 23765486 23765649 -138834281 + MER5A DNA MER1_type 16 183 -6 1768 169 3 17 chrX 23765762 23766064 -138833866 + AluJo SINE Alu 6 303 -9 388 263 69 50 chrX 23768260 23768420 -138831510 + MLT1L LTR MaLR 445 607 -8 2139 141 0 0 chrX 23769549 23769848 -138830082 - AluSx SINE Alu -13 299 1 2393 91 0 0 chrX 23770897 23771206 -138828724 - AluSg SINE Alu -1 309 1 4280 96 8 22 chrX 23771356 23771981 -138827949 - L1MA1 LINE L1 0 6302 5687 7203 65 16 1 chrX 23772084 23773586 -138826344 + L1PA6 LINE L1 4627 6143 -11 412 243 108 0 chrX 23773618 23773729 -138826201 + MER63A DNA MER1_type 88 210 0 1387 230 67 12 chrX 23773729 23774072 -138825858 - L1ME LINE L1 -512 5650 5289 257 329 107 36 chrX 23774147 23774372 -138825558 + MIR SINE MIR 2 242 -20 329 278 179 47 chrX 23774833 23775045 -138824885 + L2 LINE L2 3011 3250 -22 195 100 0 0 chrX 23775210 23775240 -138824690 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrX 23775443 23775465 -138824465 + AT_rich Low_complexity Low_complexity 1 22 0 2395 67 0 3 chrX 23776386 23776686 -138823244 + AluSc SINE Alu 1 299 -10 225 0 0 0 chrX 23776735 23776760 -138823170 + (TA)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chrX 23776803 23776826 -138823104 + (TC)n Simple_repeat Simple_repeat 2 24 0 583 250 26 7 chrX 23777150 23777302 -138822628 + MER5B DNA MER1_type 20 174 -4 428 306 87 29 chrX 23777304 23777546 -138822384 + L2 LINE L2 2499 2754 -560 2177 81 3 11 chrX 23777638 23777952 -138821978 - AluSp SINE Alu 0 312 1 498 224 148 15 chrX 23777957 23778153 -138821777 - L1MD3 LINE L1 -8 7987 7766 479 251 20 126 chrX 23778236 23778331 -138821599 + MER5B DNA MER1_type 1 66 -112 458 254 136 73 chrX 23778331 23778508 -138821422 - MER5A DNA MER1_type -1 188 1 479 251 20 126 chrX 23778508 23778611 -138821319 + MER5B DNA MER1_type 66 178 0 571 304 133 54 chrX 23779015 23779571 -138820359 + L2 LINE L2 1367 1966 -1348 23 33 0 0 chrX 23779658 23779688 -138820242 + AT_rich Low_complexity Low_complexity 1 30 0 276 265 128 0 chrX 23780301 23780403 -138819527 + L2 LINE L2 3198 3312 -1 * 344 372 53 36 chrX 23780399 23780926 -138819004 + L2 LINE L2 1997 2532 -782 512 276 7 26 chrX 23781018 23781170 -138818760 + MER103 DNA DNA 11 159 -7 261 0 0 0 chrX 23781178 23781207 -138818723 + (T)n Simple_repeat Simple_repeat 1 29 0 3361 220 63 33 chrX 23781466 23783245 -138816685 - L1MCb LINE L1 -3529 3035 1044 1896 154 0 13 chrX 23783245 23783543 -138816387 - AluJo SINE Alu -18 294 1 3361 220 63 33 chrX 23783543 23784052 -138815878 - L1MCb LINE L1 -5520 1044 552 428 243 36 21 chrX 23784132 23784272 -138815658 - L1MCb LINE L1 -5493 552 411 380 215 87 60 chrX 23784274 23784423 -138815507 - MIR SINE MIR -108 154 2 2020 187 16 53 chrX 23784550 23785042 -138814888 + MER31A LTR ERV1 12 485 0 979 154 44 11 chrX 23785558 23785740 -138814190 + MER5A DNA MER1_type 1 188 -1 539 199 166 11 chrX 23785830 23785986 -138813944 + MER5A DNA MER1_type 6 189 0 345 332 65 8 chrX 23786918 23787099 -138812831 - MIR SINE MIR -55 207 17 552 222 170 20 chrX 23787123 23787276 -138812654 + MER5A DNA MER1_type 9 184 -5 276 323 65 32 chrX 23788199 23788292 -138811638 - L2 LINE L2 -19 3253 3158 189 0 0 0 chrX 23788934 23788955 -138810975 + (A)n Simple_repeat Simple_repeat 1 21 0 405 0 0 0 chrX 23788955 23789000 -138810930 + (TA)n Simple_repeat Simple_repeat 1 45 0 1047 261 32 11 chrX 23789018 23789298 -138810632 + LTR16C LTR ERVL 158 443 -48 237 244 122 37 chrX 23790517 23790599 -138809331 + L3 LINE CR1 1485 1573 -4 1064 113 154 36 chrX 23791128 23791323 -138808607 - MER20 DNA MER1_type -1 218 1 342 213 83 37 chrX 23791404 23791512 -138808418 - MER58C DNA MER1_type -31 184 72 304 237 0 0 chrX 23792129 23792188 -138807742 - L2 LINE L2 -8 3305 3247 294 237 93 72 chrX 23792519 23792658 -138807272 + MIR SINE MIR 3 145 -63 21 0 0 0 chrX 23793728 23793749 -138806181 + AT_rich Low_complexity Low_complexity 1 21 0 522 57 0 0 chrX 23796446 23796516 -138803414 + (CGG)n Simple_repeat Simple_repeat 2 71 0 349 325 132 66 chrX 23796531 23796971 -138802959 + L1M2 LINE L1 563 1031 -5818 22 35 0 0 chrX 23797795 23797824 -138802106 + GC_rich Low_complexity Low_complexity 1 29 0 259 320 0 0 chrX 23798270 23798345 -138801585 + GA-rich Low_complexity Low_complexity 1 75 0 382 114 44 26 chrX 23799664 23799778 -138800152 + GA-rich Low_complexity Low_complexity 2 117 0 309 165 71 0 chrX 23799939 23800024 -138799906 - L1ME4a LINE L1 -4 6117 6027 688 282 95 17 chrX 23800079 23800320 -138799610 + MIR SINE MIR 2 261 -1 2458 197 28 49 chrX 23800358 23800613 -138799317 + MER90 LTR ERV1 59 318 -296 2395 86 7 0 chrX 23800613 23800916 -138799014 + AluSq SINE Alu 1 305 -8 2458 197 28 49 chrX 23800916 23801228 -138798702 + MER90 LTR ERV1 318 614 0 618 269 73 8 chrX 23801257 23801517 -138798413 - L1ME4a LINE L1 -197 5924 5648 24 32 0 0 chrX 23803137 23803168 -138796762 + AT_rich Low_complexity Low_complexity 1 31 0 406 352 66 9 chrX 23804320 23804547 -138795383 - MIR SINE MIR -10 252 13 201 184 0 0 chrX 23804832 23804870 -138795060 - MIR3 SINE MIR -48 160 123 230 250 130 56 chrX 23805868 23805976 -138793954 - L2 LINE L2 -12 3260 3145 952 304 58 26 chrX 23806242 23806587 -138793343 + LTR16C LTR ERVL 136 491 0 229 121 0 0 chrX 23806647 23806680 -138793250 + L1MB7 LINE L1 6143 6175 -9 452 358 107 36 chrX 23806710 23807149 -138792781 - L2 LINE L2 -338 2976 2507 24 0 0 0 chrX 23810265 23810289 -138789641 + AT_rich Low_complexity Low_complexity 1 24 0 1070 222 42 84 chrX 23811597 23812003 -138787927 + LTR16C LTR ERVL 103 491 0 997 214 11 0 chrX 23813098 23813285 -138786645 + MER5A DNA MER1_type 1 189 0 979 230 49 0 chrX 23813747 23813973 -138785957 - MIR SINE MIR -22 240 4 231 174 0 0 chrX 23814206 23814249 -138785681 - MIR SINE MIR -64 144 101 396 0 0 0 chrX 23815161 23815205 -138784725 + (CA)n Simple_repeat Simple_repeat 2 45 0 396 269 97 34 chrX 23816946 23817121 -138782809 - MIR SINE MIR -46 216 31 2314 40 40 17 chrX 23817199 23817496 -138782434 + AluY SINE Alu 1 304 -7 296 270 22 130 chrX 23817789 23817974 -138781956 + MIR3 SINE MIR 42 206 -2 252 0 0 0 chrX 23818472 23818500 -138781430 + (T)n Simple_repeat Simple_repeat 1 28 0 531 244 59 0 chrX 23818653 23818788 -138781142 + LTR16C LTR ERVL 301 443 -48 218 339 0 17 chrX 23820214 23820273 -138779657 + MIR3 SINE MIR 13 70 -138 486 337 73 44 chrX 23820469 23820813 -138779117 + L2 LINE L2 2942 3295 -18 1106 254 32 44 chrX 23821207 23821545 -138778385 + LTR16C LTR ERVL 158 491 0 193 254 109 0 chrX 23821564 23821619 -138778311 + MIR SINE MIR 120 180 -82 441 165 13 13 chrX 23821654 23821733 -138778197 - MER116 DNA Mariner 0 80 2 794 225 13 53 chrX 23822482 23822709 -138777221 + MIR SINE MIR 34 251 -11 643 311 24 5 chrX 23823103 23823309 -138776621 - MIR SINE MIR -6 256 47 321 171 92 13 chrX 23823697 23823773 -138776157 - AluSp/q SINE Alu -3 300 219 2062 104 0 4 chrX 23823887 23824157 -138775773 - AluSq SINE Alu -44 269 1 463 200 61 17 chrX 23824342 23824457 -138775473 + L2 LINE L2 3189 3308 -5 22 56 0 0 chrX 23824781 23824817 -138775113 + AT_rich Low_complexity Low_complexity 1 36 0 647 206 56 0 chrX 23824909 23825035 -138774895 + MER94 DNA DNA 1 133 -1 221 328 90 0 chrX 23825715 23825837 -138774093 - L2 LINE L2 0 3313 3181 288 0 0 0 chrX 23825984 23826016 -138773914 + (TG)n Simple_repeat Simple_repeat 2 33 0 217 288 50 25 chrX 23826153 23826233 -138773697 - L2 LINE L2 -75 3197 3116 359 347 49 60 chrX 23826441 23826944 -138772986 - L2 LINE L2 -189 3083 2574 1600 242 88 13 chrX 23827247 23827702 -138772228 + LTR16C LTR ERVL 1 489 -2 396 0 0 0 chrX 23828688 23828732 -138771198 + (TG)n Simple_repeat Simple_repeat 2 45 0 2199 228 31 23 chrX 23828744 23829330 -138770600 - L1ME3 LINE L1 -5 6157 5560 * 33834 87 9 8 chrX 23829318 23833960 -138765970 + L1P LINE L1 11 4658 -1488 1734 69 0 30 chrX 23834080 23834312 -138765618 - L1M1 LINE L1 -591 5711 5487 505 226 0 0 chrX 23835932 23836016 -138763914 - MER63 DNA MER1_type 0 1062 979 1172 271 92 45 chrX 23836484 23836953 -138762977 + LTR16C LTR ERVL 1 491 0 1114 181 0 15 chrX 23837468 23837673 -138762257 - L1M4 LINE L1 -451 5733 5532 2827 129 0 63 chrX 23839240 23839728 -138760202 - MLT1C LTR MaLR 0 467 11 1762 126 26 4 chrX 23841135 23841404 -138758526 + AluSx SINE Alu 1 275 -37 936 69 15 0 chrX 23841517 23841648 -138758282 + L1MA7 LINE L1 6158 6290 -1 29 0 0 0 chrX 23842889 23842918 -138757012 + AT_rich Low_complexity Low_complexity 1 29 0 1591 180 27 20 chrX 23843054 23843349 -138756581 + AluJo SINE Alu 1 297 -15 330 26 0 0 chrX 23844273 23844312 -138755618 + (CA)n Simple_repeat Simple_repeat 1 39 0 223 88 18 53 chrX 23844731 23844788 -138755142 + (CCCCCA)n Simple_repeat Simple_repeat 1 55 0 192 40 0 0 chrX 23846080 23846105 -138753825 + (GA)n Simple_repeat Simple_repeat 1 25 0 404 322 20 0 chrX 23846753 23846905 -138753025 + (TATG)n Simple_repeat Simple_repeat 4 158 0 2142 70 37 0 chrX 23847226 23847345 -138752585 + AluY SINE Alu 2 115 -201 315 0 0 0 chrX 23847345 23847380 -138752550 + (CA)n Simple_repeat Simple_repeat 2 36 0 2142 70 37 0 chrX 23847380 23847565 -138752365 + AluY SINE Alu 115 316 0 2109 91 21 11 chrX 23847916 23848203 -138751727 - AluSc SINE Alu -19 290 1 254 106 21 0 chrX 23848708 23848755 -138751175 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 296 329 103 34 chrX 23849097 23849243 -138750687 + MIR3 SINE MIR 2 157 -51 267 292 148 68 chrX 23849987 23850223 -138749707 - L3 LINE CR1 -60 1517 1263 454 250 17 42 chrX 23850287 23850407 -138749523 + L2 LINE L2 3189 3305 -8 310 106 0 0 chrX 23850418 23850465 -138749465 - MIR SINE MIR -105 157 111 223 168 0 109 chrX 23850832 23850933 -138748997 + A-rich Low_complexity Low_complexity 2 91 0 22 56 0 0 chrX 23851550 23851586 -138748344 + AT_rich Low_complexity Low_complexity 1 36 0 305 289 21 31 chrX 23852484 23852581 -138747349 + MIR3 SINE MIR 79 174 -34 441 36 0 0 chrX 23853952 23854007 -138745923 + (TG)n Simple_repeat Simple_repeat 1 55 0 201 74 0 0 chrX 23854074 23854101 -138745829 + (T)n Simple_repeat Simple_repeat 1 27 0 856 182 0 0 chrX 23856195 23856370 -138743560 + FLAM_C SINE Alu 2 176 0 1050 159 0 0 chrX 23856380 23856543 -138743387 + FRAM SINE Alu 1 160 -16 192 40 0 0 chrX 23858048 23858073 -138741857 + (T)n Simple_repeat Simple_repeat 1 25 0 2193 103 0 13 chrX 23859558 23859858 -138740072 - AluSx SINE Alu -16 296 1 217 199 70 39 chrX 23862415 23862571 -138737359 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 253 287 148 9 chrX 23863742 23863857 -138736073 - L2 LINE L2 -6 3307 3177 237 283 69 123 chrX 23863860 23864136 -138735794 - L2 LINE L2 -1 3271 3011 302 272 124 63 chrX 23864594 23864973 -138734957 - MLT1J LTR MaLR 0 511 110 186 143 0 0 chrX 23865046 23865081 -138734849 + (TG)n Simple_repeat Simple_repeat 2 36 0 2448 64 7 3 chrX 23865888 23866186 -138733744 + AluSp SINE Alu 1 299 -14 1900 60 21 0 chrX 23866328 23866563 -138733367 - L1MA1 LINE L1 -8 6294 6055 2266 199 31 8 chrX 23866834 23867316 -138732614 - Charlie4a DNA MER1_type 0 508 16 913 292 94 45 chrX 23868089 23868557 -138731373 - L2 LINE L2 -219 3094 2577 1920 166 61 33 chrX 23868557 23868918 -138731012 - MLT1A2 LTR MaLR 0 374 4 913 292 94 45 chrX 23868918 23869049 -138730881 - L2 LINE L2 -736 2577 2454 212 316 146 28 chrX 23869287 23869499 -138730431 + MIR SINE MIR 12 248 -14 2267 98 0 10 chrX 23869515 23869859 -138730071 - AluSx SINE Alu 0 312 1 285 263 115 21 chrX 23869966 23870089 -138729841 - MER5B DNA MER1_type -3 175 61 887 122 64 6 chrX 23870091 23870247 -138729683 - Charlie1 DNA MER1_type -178 2583 2419 292 209 0 15 chrX 23870268 23870335 -138729595 + MER5B DNA MER1_type 113 178 0 235 278 0 0 chrX 23870475 23870529 -138729401 - MIR SINE MIR -3 259 206 435 227 209 0 chrX 23870764 23870874 -138729056 + L2 LINE L2 3134 3266 -6 2174 113 10 3 chrX 23871518 23871819 -138728111 + AluSx SINE Alu 1 303 -9 1500 275 15 10 chrX 23871883 23872272 -138727658 - LTR16C LTR ERVL -10 481 91 2355 135 0 6 chrX 23874060 23874416 -138725514 - MER47A DNA MER2_type 0 366 13 558 256 161 22 chrX 23874653 23874927 -138725003 - LTR50 LTR ERVL 0 795 484 502 195 55 47 chrX 23875153 23875281 -138724649 - LTR50 LTR ERVL -650 145 17 2405 74 0 0 chrX 23875564 23875860 -138724070 - AluSx SINE Alu -16 296 1 187 345 138 14 chrX 23877123 23877268 -138722662 + L2 LINE L2 3102 3264 -8 * 280 259 58 58 chrX 23877242 23877381 -138722549 + MIR SINE MIR 114 252 -10 252 200 178 33 chrX 23877787 23877877 -138722053 + L2 LINE L2 3169 3271 -42 866 300 29 47 chrX 23877881 23878264 -138721666 + MLT1H LTR MaLR 3 378 -171 193 176 0 0 chrX 23878399 23878433 -138721497 + L2 LINE L2 3280 3313 0 195 347 0 14 chrX 23878519 23878591 -138721339 + MIR3 SINE MIR 3 73 -135 431 320 37 33 chrX 23879702 23879946 -138719984 + MIR SINE MIR 6 250 -12 44 35 0 0 chrX 23881527 23881585 -138718345 + AT_rich Low_complexity Low_complexity 1 58 0 2271 101 0 3 chrX 23881819 23882117 -138717813 - AluSg SINE Alu -13 297 1 185 128 0 26 chrX 23883459 23883498 -138716432 + (TTA)n Simple_repeat Simple_repeat 1 38 0 183 42 0 0 chrX 23883669 23883693 -138716237 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 622 263 41 18 chrX 23884198 23884369 -138715561 - MLT1J2 LTR MaLR 0 450 276 550 195 172 8 chrX 23884365 23884493 -138715437 - MLT1J2 LTR MaLR -296 154 6 * 212 339 0 0 chrX 23884938 23885000 -138714930 + L3 LINE CR1 1115 1176 -401 * 814 284 159 29 chrX 23884996 23885569 -138714361 - L2 LINE L2 -2 3311 2647 555 268 181 45 chrX 23885871 23886207 -138713723 + MLT1J LTR MaLR 111 492 -19 244 285 76 35 chrX 23886341 23886485 -138713445 + L2 LINE L2 3042 3191 -122 350 219 24 0 chrX 23887142 23887224 -138712706 - MLT1H1 LTR MaLR -2 553 470 234 304 0 0 chrX 23887236 23887305 -138712625 + MIR SINE MIR 186 254 -8 213 39 0 0 chrX 23887672 23887698 -138712232 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 387 115 10 83 chrX 23888525 23888621 -138711309 + Charlie7 DNA MER1_type 45 133 -2479 354 114 267 48 chrX 23888628 23888733 -138711197 + MER53 DNA DNA 1 128 -61 817 206 82 113 chrX 23888885 23889346 -138710584 + Charlie7 DNA MER1_type 2166 2612 0 2385 93 0 3 chrX 23889429 23889730 -138710200 - AluSx SINE Alu -12 300 1 719 213 101 11 chrX 23891236 23891424 -138708506 + MER3 DNA MER1_type 5 209 0 460 327 57 65 chrX 23892194 23892591 -138707339 - L2 LINE L2 -1 3312 2900 2344 70 0 0 chrX 23892591 23892898 -138707032 - AluSx SINE Alu 0 307 1 460 327 57 65 chrX 23892898 23893131 -138706799 - L2 LINE L2 -413 2900 2667 269 316 117 54 chrX 23893763 23894079 -138705851 + L2 LINE L2 2937 3272 0 865 223 148 13 chrX 23894314 23894543 -138705387 + MIR SINE MIR 3 262 0 2176 228 67 13 chrX 23894966 23895518 -138704412 - L1ME3A LINE L1 -1 6169 5588 278 246 0 0 chrX 23895525 23895582 -138704348 + MER5B DNA MER1_type 122 178 0 515 231 253 11 chrX 23896254 23896436 -138703494 + MIR SINE MIR 37 262 0 298 349 60 0 chrX 23897118 23897267 -138702663 - MIR SINE MIR -11 251 94 296 330 11 0 chrX 23897984 23898072 -138701858 - L2 LINE L2 0 3313 3225 256 224 53 40 chrX 23898291 23898367 -138701563 + MER5B DNA MER1_type 2 78 -100 641 207 72 42 chrX 23898879 23899072 -138700858 + MIR SINE MIR 64 262 0 296 272 11 11 chrX 23899324 23899416 -138700514 + MER5A DNA MER1_type 3 94 -95 3493 185 88 111 chrX 23900812 23901193 -138698737 - L1MD2 LINE L1 -2 6357 5969 543 160 0 53 chrX 23901193 23901287 -138698643 + FLAM SINE Alu 39 127 -16 3493 185 88 111 chrX 23901287 23901908 -138698022 - L1MD2 LINE L1 -390 5969 5287 3215 171 21 5 chrX 23901908 23902491 -138697439 - L1MB4 LINE L1 0 6180 5589 1484 170 34 19 chrX 23902491 23902931 -138696999 + L1MB7 LINE L1 5082 5528 -650 448 183 0 11 chrX 23902930 23903037 -138696893 - L1MD2 LINE L1 -845 5301 5204 * 6109 97 3 9 chrX 23903052 23903910 -138696020 - L1PA14 LINE L1 -7 6154 5302 892 211 11 22 chrX 23906704 23906889 -138693041 - MER5A DNA MER1_type -6 183 1 408 284 177 0 chrX 23907773 23907914 -138692016 + MER5A DNA MER1_type 9 174 -15 414 0 0 0 chrX 23908583 23908629 -138691301 + (TG)n Simple_repeat Simple_repeat 1 46 0 553 226 14 104 chrX 23908860 23909081 -138690849 - MER102a DNA MER1_type -8 322 122 358 234 194 0 chrX 23911655 23911779 -138688151 + L1ME4a LINE L1 5795 5942 -179 788 188 17 17 chrX 23912518 23912699 -138687231 - MER53 DNA DNA 0 189 9 505 176 19 0 chrX 23912984 23913092 -138686838 - L1MB8 LINE L1 -2 6176 6067 1332 247 22 6 chrX 23913378 23913743 -138686187 + L1MB7 LINE L1 5726 6096 -88 264 316 147 7 chrX 23913996 23914132 -138685798 + MIR SINE MIR 56 210 -52 345 241 154 36 chrX 23915566 23915738 -138684192 + L1ME LINE L1 2418 2617 -3923 1484 162 120 0 chrX 23915738 23916047 -138683883 + MER7A DNA MER2_type 1 344 -2 345 241 154 36 chrX 23916047 23916069 -138683861 + L1ME LINE L1 2617 2635 -3905 227 284 98 48 chrX 23916656 23917075 -138682855 + L1ME LINE L1 4464 4903 -1637 397 290 117 51 chrX 23917263 23917545 -138682385 + L1ME LINE L1 5144 5406 -1152 2038 126 10 10 chrX 23917545 23917839 -138682091 - AluSx SINE Alu -18 294 1 397 290 117 51 chrX 23917839 23918495 -138681435 + L1ME LINE L1 5406 6157 -401 2226 72 61 3 chrX 23918495 23918788 -138681142 + AluSx SINE Alu 1 310 -2 397 290 117 51 chrX 23918788 23918853 -138681077 + L1ME LINE L1 6157 6216 -342 21 0 0 0 chrX 23919894 23919915 -138680015 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 23920297 23920320 -138679610 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chrX 23920415 23920462 -138679468 + AT_rich Low_complexity Low_complexity 1 47 0 264 176 78 0 chrX 23921050 23921101 -138678829 - LTR40a LTR ERVL -365 154 100 243 299 26 26 chrX 23921104 23921221 -138678709 - MER96 DNA MER1_type? -5 170 54 1053 163 22 0 chrX 23921221 23921399 -138678531 - AluJo SINE Alu -9 303 122 22859 161 19 19 chrX 23921402 23925061 -138674869 - L1PA11 LINE L1 -5 7607 3947 2251 109 10 6 chrX 23925061 23925373 -138674557 - AluSq SINE Alu 0 313 1 22859 161 19 19 chrX 23925373 23927827 -138672103 - L1PA11 LINE L1 -3665 3947 143 284 214 0 0 chrX 23927836 23927892 -138672038 + MER96 DNA MER1_type? 120 175 0 * 320 253 152 0 chrX 23927892 23927984 -138671946 - LTR40a LTR ERVL -411 108 2 494 194 0 0 chrX 23928118 23928211 -138671719 + L1ME1 LINE L1 5611 5703 -463 3530 131 5 8 chrX 23928228 23928824 -138671106 - L1MA6 LINE L1 0 6300 5707 1289 146 11 60 chrX 23928824 23929105 -138670825 - L1MA7 LINE L1 -243 6048 5782 537 121 0 0 chrX 23929107 23929190 -138670740 + (TG)n Simple_repeat Simple_repeat 2 84 0 4719 158 18 5 chrX 23929193 23930495 -138669435 - L1MA7 LINE L1 -498 5793 4472 637 201 50 92 chrX 23930495 23930798 -138669132 + L1ME1 LINE L1 5697 5986 -180 605 209 7 20 chrX 23930798 23930951 -138668979 + L1MA10 LINE L1 6181 6331 -3 230 254 136 27 chrX 23932298 23932408 -138667522 - MLT1L LTR MaLR -326 289 168 545 248 93 50 chrX 23932668 23933013 -138666917 + MLT1H LTR MaLR 104 542 -13 283 292 34 11 chrX 23933298 23933387 -138666543 + L2 LINE L2 3223 3313 0 2539 140 19 9 chrX 23933566 23933994 -138665936 + MSTB1 LTR MaLR 1 432 0 268 281 83 16 chrX 23934943 23935135 -138664795 + MLT1I LTR MaLR 50 133 -276 321 268 21 31 chrX 23935499 23935596 -138664334 - MIR SINE MIR -38 224 129 1530 162 3 54 chrX 23935596 23935960 -138663970 - MER4A LTR ERV1 0 664 261 536 152 0 10 chrX 23935960 23936059 -138663871 - MER4A LTR ERV1 -566 98 1 15108 95 45 25 chrX 23936064 23936358 -138663572 - MER4A-int LTR ERV1 -1 6597 6310 2053 108 45 0 chrX 23936358 23936645 -138663285 + AluSg SINE Alu 1 300 -10 15108 95 45 25 chrX 23936645 23938886 -138661044 - MER4A-int LTR ERV1 -288 6310 4012 219 36 0 0 chrX 23938886 23938914 -138661016 + (T)n Simple_repeat Simple_repeat 1 28 0 40987 31 21 1 chrX 23938915 23944945 -138654985 - L1HS LINE L1 0 6155 1 951 108 38 16 chrX 23944945 23945131 -138654799 - MER4A-int LTR ERV1 -2572 4026 3837 * 6746 95 153 111 chrX 23945130 23946361 -138653569 - MER4A-int LTR ERV1 -2917 3681 2503 2050 82 4 8 chrX 23946361 23946629 -138653301 - AluSp SINE Alu 0 313 47 6746 95 153 111 chrX 23946629 23947473 -138652457 - MER4A-int LTR ERV1 -4095 2503 1696 2367 49 0 3 chrX 23947473 23947804 -138652126 + AluY SINE Alu 1 330 0 6746 95 153 111 chrX 23947804 23948997 -138650933 - MER4A-int LTR ERV1 -4902 1696 2 1308 143 0 9 chrX 23949001 23949211 -138650719 - MER4A LTR ERV1 0 664 457 378 342 53 16 chrX 23949724 23949914 -138650016 + MIR SINE MIR 28 224 -38 2391 143 19 21 chrX 23950337 23950662 -138649268 - MSTB LTR MaLR -1 425 100 2348 119 11 3 chrX 23950662 23951023 -138648907 - THE1B LTR MaLR 0 364 1 2391 143 19 21 chrX 23951023 23951123 -138648807 - MSTB LTR MaLR -326 100 1 423 260 142 18 chrX 23951138 23951307 -138648623 + MIR SINE MIR 12 201 -61 268 261 14 14 chrX 23952445 23952514 -138647416 + L2 LINE L2 3223 3291 -22 357 24 0 0 chrX 23952530 23952572 -138647358 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 387 244 144 112 chrX 23954003 23954405 -138645525 - MLT1H LTR MaLR -127 422 8 218 302 52 9 chrX 23954540 23954656 -138645274 + CT-rich Low_complexity Low_complexity 4 124 0 227 263 92 13 chrX 23955775 23955851 -138644079 + MIR SINE MIR 104 185 -77 2451 84 0 0 chrX 23956118 23956427 -138643503 + AluSg SINE Alu 1 309 -1 297 0 0 0 chrX 23956983 23957016 -138642914 + (TTA)n Simple_repeat Simple_repeat 2 34 0 861 213 50 20 chrX 23957191 23957393 -138642537 - MER3 DNA MER1_type 0 209 2 744 186 90 34 chrX 23957996 23958173 -138641757 + MER5A DNA MER1_type 3 189 0 366 23 0 0 chrX 23958219 23958262 -138641668 + (TG)n Simple_repeat Simple_repeat 2 44 0 2295 102 3 0 chrX 23958312 23958617 -138641313 + AluSg SINE Alu 1 306 -4 511 255 56 6 chrX 23959580 23959741 -138640189 - MIR SINE MIR -13 249 81 604 217 173 48 chrX 23959874 23960123 -138639807 - MLT1J2 LTR MaLR -132 318 39 1346 106 111 4 chrX 23960172 23960407 -138639523 + THE1C LTR MaLR 116 375 0 2478 74 3 0 chrX 23961367 23961666 -138638264 - AluSp SINE Alu -13 300 1 15089 128 23 8 chrX 23961695 23964076 -138635854 + Tigger1 DNA MER2_type 1 2418 0 375 250 73 55 chrX 23966339 23966503 -138633427 + LTR33 LTR ERVL 14 180 -341 373 277 50 25 chrX 23966828 23966947 -138632983 - L2 LINE L2 0 3272 3151 1514 196 95 17 chrX 23967630 23967977 -138631953 - MLT1A2 LTR MaLR 0 374 1 679 308 43 24 chrX 23968238 23968566 -138631364 + LTR16C LTR ERVL 158 491 0 7277 43 0 5 chrX 23968702 23969680 -138630250 - L1PA8 LINE L1 -2 6170 5198 676 244 36 6 chrX 23969825 23969993 -138629937 - MER5B DNA MER1_type 0 178 6 631 174 29 51 chrX 23970004 23970142 -138629788 + MER58 DNA MER1_type 2 136 -2284 1211 304 9 12 chrX 23971984 23972405 -138627525 + LTR16A LTR ERVL 25 444 -6 374 291 199 7 chrX 23972460 23972601 -138627329 - MIR SINE MIR -93 169 2 414 301 85 60 chrX 23973977 23974316 -138625614 - L2 LINE L2 -6 3307 2881 4805 99 18 15 chrX 23974402 23975121 -138624809 - L1PA10 LINE L1 -1 6167 5447 780 152 51 7 chrX 23975272 23975410 -138624520 - MER46A DNA MER2_type 0 236 93 619 198 76 13 chrX 23975610 23975638 -138624292 - MER5B DNA MER1_type -3 175 150 1837 159 0 23 chrX 23975638 23975940 -138623990 - AluJo SINE Alu -17 295 1 619 198 76 13 chrX 23975940 23976068 -138623862 - MER5B DNA MER1_type -28 150 9 895 305 30 3 chrX 23976767 23977101 -138622829 - LTR16C LTR ERVL -60 431 89 213 178 0 0 chrX 23978929 23978974 -138620956 + T-rich Low_complexity Low_complexity 1 45 0 7615 28 3 0 chrX 23978974 23980111 -138619819 - L1PA4 LINE L1 0 6155 5019 716 195 95 0 chrX 23980724 23980893 -138619037 - MER53 DNA DNA -3 186 2 316 284 30 45 chrX 23981203 23981337 -138618593 + MIR SINE MIR 116 247 -15 189 139 0 0 chrX 23981353 23981396 -138618534 + (CAT)n Simple_repeat Simple_repeat 2 44 0 338 171 85 24 chrX 23981978 23982060 -138617870 - L1MD3 LINE L1 -8 7987 7901 189 0 0 0 chrX 23983237 23983258 -138616672 + (A)n Simple_repeat Simple_repeat 1 21 0 1070 277 0 36 chrX 23983275 23983604 -138616326 - MER102a DNA MER1_type -5 325 9 2567 49 0 3 chrX 23983858 23984163 -138615767 - AluY SINE Alu -7 304 1 342 0 0 0 chrX 23984375 23984413 -138615517 + (CA)n Simple_repeat Simple_repeat 2 39 0 1517 177 7 26 chrX 23984497 23984768 -138615162 + AluJo SINE Alu 12 277 -35 401 227 20 107 chrX 23985190 23985340 -138614590 - MIR SINE MIR -75 187 51 678 155 139 16 chrX 23986542 23986705 -138613225 + MER5A DNA MER1_type 4 189 0 237 356 0 0 chrX 23986725 23986798 -138613132 + L2 LINE L2 3227 3299 -14 732 189 31 105 chrX 23986907 23986970 -138612960 - MER5B DNA MER1_type -1 177 111 1962 106 16 10 chrX 23986970 23987282 -138612648 - L1MA3 LINE L1 0 6305 5992 732 189 31 105 chrX 23987282 23987409 -138612521 - MER5B DNA MER1_type -67 111 1 423 262 10 0 chrX 23988678 23988781 -138611149 - MLT1J LTR MaLR -315 196 93 345 24 0 0 chrX 23988793 23988835 -138611095 + (TG)n Simple_repeat Simple_repeat 1 42 0 812 281 58 11 chrX 23988860 23989138 -138610792 - LTR16C LTR ERVL -200 291 1 23 0 0 0 chrX 23989484 23989507 -138610423 + AT_rich Low_complexity Low_complexity 1 23 0 2560 43 0 0 chrX 23989708 23990013 -138609917 - AluY SINE Alu -3 308 4 279 0 0 0 chrX 23991064 23991095 -138608835 + (TG)n Simple_repeat Simple_repeat 2 32 0 215 137 59 0 chrX 23991309 23991360 -138608570 + (TA)n Simple_repeat Simple_repeat 1 54 0 1221 135 0 0 chrX 23991362 23991569 -138608361 - L1M4 LINE L1 -383 5791 5585 934 194 0 16 chrX 23991882 23992068 -138607862 - MER20 DNA MER1_type -6 213 31 366 283 137 58 chrX 23992100 23992464 -138607466 - MLT1J LTR MaLR -110 401 9 2547 68 0 0 chrX 23992684 23992992 -138606938 + AluSx SINE Alu 1 308 -4 180 47 47 47 chrX 23993535 23993578 -138606352 + (TATAA)n Simple_repeat Simple_repeat 1 43 0 1715 201 28 63 chrX 23993593 23994066 -138605864 + MLT1C LTR MaLR 10 465 -2 183 167 0 0 chrX 23994848 23994890 -138605040 + A-rich Low_complexity Low_complexity 3 44 0 3149 105 11 4 chrX 23995300 23995767 -138604163 + L1PA13 LINE L1 5690 6159 -4 1052 316 204 26 chrX 23995880 23996723 -138603207 - L3 LINE CR1 -104 1473 481 930 167 118 20 chrX 23996768 23996972 -138602958 + MER58A DNA MER1_type 1 224 0 3009 267 138 33 chrX 23996979 23998402 -138601528 + L2 LINE L2 1588 3155 -158 383 287 164 27 chrX 23998436 23999139 -138600791 + L1M4 LINE L1 2334 3132 -3014 5107 128 14 75 chrX 23999160 24000261 -138599669 - L1MA8 LINE L1 -4 6287 5254 2234 188 7 0 chrX 24000274 24000727 -138599203 + L1 LINE L1 4758 5213 -933 323 271 64 28 chrX 24000710 24001068 -138598862 + L1M4 LINE L1 3122 3492 -2654 * 1564 227 163 2 chrX 24002430 24002889 -138597041 - MLT1H LTR MaLR -10 539 7 25 31 0 0 chrX 24003776 24003808 -138596122 + AT_rich Low_complexity Low_complexity 1 32 0 2014 102 42 3 chrX 24003819 24004103 -138595827 + AluSx SINE Alu 1 295 -17 603 66 0 0 chrX 24004126 24004202 -138595728 - AluS SINE Alu -237 76 1 392 313 20 40 chrX 24004260 24004499 -138595431 + MIR SINE MIR 23 258 -4 251 299 52 0 chrX 24004977 24005054 -138594876 + L2 LINE L2 2412 2492 -822 254 352 0 0 chrX 24005210 24005298 -138594632 - MER117 DNA MER1_type -37 160 73 403 257 50 0 chrX 24005745 24005846 -138594084 - MLT1J2 LTR MaLR 0 450 345 27 0 0 0 chrX 24006003 24006030 -138593900 + AT_rich Low_complexity Low_complexity 1 27 0 395 153 0 0 chrX 24006230 24006302 -138593628 - L1PA16 LINE L1 0 6166 6095 226 361 0 0 chrX 24006345 24006453 -138593477 - L1MC/D LINE L1 -1964 5844 5737 250 307 46 20 chrX 24006476 24006629 -138593301 + L1M4 LINE L1 4911 5067 -1079 2255 123 22 30 chrX 24008211 24008367 -138591563 + THE1B LTR MaLR 1 157 -207 2523 53 0 3 chrX 24008367 24008668 -138591262 - AluY SINE Alu -11 300 1 2255 123 22 30 chrX 24008668 24008878 -138591052 + THE1B LTR MaLR 157 364 0 228 35 0 0 chrX 24010186 24010215 -138589715 + (TC)n Simple_repeat Simple_repeat 2 30 0 2157 109 13 0 chrX 24010215 24010517 -138589413 - AluSx SINE Alu -6 306 1 359 216 129 42 chrX 24012212 24012361 -138587569 - MLT1L LTR MaLR -342 246 84 1962 177 53 19 chrX 24012398 24012810 -138587120 - MSTB LTR MaLR 0 426 1 248 280 104 40 chrX 24013661 24013786 -138586144 - MIR SINE MIR -63 199 67 379 257 82 98 chrX 24014235 24014418 -138585512 + MIR SINE MIR 32 211 -51 345 214 83 88 chrX 24015266 24015458 -138584472 - L1ME4a LINE L1 -180 5941 5751 2431 71 0 10 chrX 24016614 24016925 -138583005 + AluY SINE Alu 1 308 -3 300 27 0 0 chrX 24016979 24017016 -138582914 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 447 19 0 0 chrX 24017015 24017067 -138582863 + (GA)n Simple_repeat Simple_repeat 2 53 0 188 100 25 0 chrX 24017327 24017367 -138582563 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 227 312 11 32 chrX 24017487 24017580 -138582350 + L2 LINE L2 3223 3313 0 532 299 55 30 chrX 24018074 24018345 -138581585 + L2 LINE L2 2236 2513 -801 275 347 10 0 chrX 24018461 24018559 -138581371 + L2 LINE L2 3161 3259 -13 731 325 144 47 chrX 24019192 24019596 -138580334 + L2 LINE L2 925 1288 -2026 216 0 0 0 chrX 24019596 24019620 -138580310 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 731 325 144 47 chrX 24019620 24019745 -138580185 + L2 LINE L2 1288 1399 -1915 701 172 0 52 chrX 24019745 24019879 -138580051 - FLAM_A SINE Alu -6 127 1 731 325 144 47 chrX 24019879 24020491 -138579439 + L2 LINE L2 1399 2180 -1134 602 198 108 25 chrX 24020491 24020648 -138579282 + MER5B DNA MER1_type 3 172 -6 602 335 123 17 chrX 24020695 24021101 -138578829 + L2 LINE L2 2205 2653 -661 340 264 54 23 chrX 24021241 24021370 -138578560 - LTR67 LTR ERVL 0 557 425 494 246 17 0 chrX 24021504 24021622 -138578308 + MER94 DNA DNA 15 134 0 * 953 216 11 0 chrX 24021622 24021789 -138578141 + MLT1F LTR MaLR 359 527 -15 2212 118 3 0 chrX 24023282 24023586 -138576344 - AluSx SINE Alu -7 305 1 2346 80 6 13 chrX 24023953 24024266 -138575664 + AluY SINE Alu 1 311 0 2254 105 3 0 chrX 24024956 24025261 -138574669 + AluSg SINE Alu 1 306 -4 2238 78 3 20 chrX 24025491 24025666 -138574264 + AluSx SINE Alu 2 172 -140 1207 139 90 145 chrX 24025666 24025940 -138573990 - LTR7 LTR ERV1 0 450 211 2583 58 3 0 chrX 24025940 24026249 -138573681 + AluY SINE Alu 1 310 -1 1207 139 90 145 chrX 24026249 24026450 -138573480 - LTR7 LTR ERV1 -239 211 1 2238 78 3 20 chrX 24026450 24026568 -138573362 + AluSx SINE Alu 172 290 -22 615 254 51 0 chrX 24026568 24026706 -138573224 + MIR SINE MIR 22 166 -96 389 119 0 0 chrX 24026712 24026771 -138573159 + Alu SINE Alu 235 293 -8 332 229 12 12 chrX 24026994 24027077 -138572853 + MIR SINE MIR 162 244 -18 2237 107 0 13 chrX 24028304 24028614 -138571316 + AluSx SINE Alu 1 306 -6 2458 76 0 0 chrX 24029374 24029675 -138570255 - AluY SINE Alu -10 301 1 404 360 16 8 chrX 24029725 24029978 -138569952 - L1M3 LINE L1 -361 5810 5556 955 262 55 30 chrX 24030029 24030550 -138569380 + MLT1G LTR MaLR 1 542 -7 333 252 126 26 chrX 24030556 24030707 -138569223 - L1M3 LINE L1 -2325 5483 5318 1298 292 68 23 chrX 24030731 24031767 -138568163 - L1M3 LINE L1 -868 5278 4182 433 152 11 11 chrX 24032921 24033013 -138566917 + GA-rich Low_complexity Low_complexity 1 92 0 1286 219 102 48 chrX 24033232 24033266 -138566664 + Charlie7 DNA MER1_type 1862 1893 -719 1981 55 47 12 chrX 24033266 24033522 -138566408 - AluY SINE Alu -3 308 44 1286 219 102 48 chrX 24033522 24034167 -138565763 + Charlie7 DNA MER1_type 1893 2577 -35 466 197 7 117 chrX 24034176 24034246 -138565684 + L2 LINE L2 3192 3241 -72 923 263 0 13 chrX 24034246 24034470 -138565460 + MER58A DNA MER1_type 1 221 -3 466 197 7 117 chrX 24034470 24034536 -138565394 + L2 LINE L2 3241 3313 0 3822 158 80 75 chrX 24034632 24034857 -138565073 - L1MA9 LINE L1 0 6312 6090 1811 121 104 0 chrX 24034857 24035137 -138564793 + AluSx SINE Alu 3 311 -1 3822 158 80 75 chrX 24035137 24036171 -138563759 - L1MA9 LINE L1 -222 6090 5041 11229 150 23 44 chrX 24037230 24039264 -138560666 - Ricksha_c DNA DNA 0 2046 55 251 282 0 51 chrX 24040040 24040118 -138559812 - L2 LINE L2 -1 3312 3239 217 266 32 32 chrX 24040329 24040423 -138559507 + L3 LINE CR1 1478 1571 -6 2251 81 10 3 chrX 24040553 24040848 -138559082 - AluSp SINE Alu -16 297 1 253 208 0 21 chrX 24042636 24042684 -138557246 - LTR16C LTR ERVL -4 487 441 1725 265 152 4 chrX 24042685 24043199 -138556731 - MLT1G1 LTR MaLR 0 595 6 1030 345 28 0 chrX 24043204 24043566 -138556364 - LTR16C LTR ERVL -47 444 73 1365 194 28 95 chrX 24043980 24044371 -138555559 + MLT1A1 LTR MaLR 1 365 0 336 302 26 0 chrX 24044408 24044524 -138555406 + MIR SINE MIR 78 196 -66 180 176 0 0 chrX 24045483 24045517 -138554413 + T-rich Low_complexity Low_complexity 1 34 0 1061 249 39 28 chrX 24045599 24046033 -138553897 - MLT1H1 LTR MaLR -75 480 1 827 296 31 4 chrX 24046141 24046367 -138553563 + MIR SINE MIR 11 242 -20 2196 106 0 0 chrX 24046978 24047301 -138552629 + AluSx SINE Alu 1 323 0 200 326 43 43 chrX 24048353 24048494 -138551436 - MIR SINE MIR -66 196 56 555 301 83 26 chrX 24049526 24049828 -138550102 - MLT1J LTR MaLR -37 474 156 250 183 100 17 chrX 24049947 24050007 -138549923 - MLT1L LTR MaLR -549 66 2 2164 91 0 3 chrX 24050227 24050540 -138549390 - AluSq SINE Alu 0 312 1 464 280 17 2 chrX 24050725 24050859 -138549071 - MIR SINE MIR -63 145 20 2091 107 47 0 chrX 24050881 24051179 -138548751 - AluSq SINE Alu 0 313 2 331 299 62 10 chrX 24052415 24052512 -138547418 - MER91C DNA MER1_type -37 103 2 2397 78 3 0 chrX 24052873 24053166 -138546764 - AluSp SINE Alu -19 294 1 184 305 17 34 chrX 24053355 24053414 -138546516 + L2 LINE L2 3232 3289 -24 3787 115 21 16 chrX 24054002 24054577 -138545353 - MER4E LTR ERV1 0 779 202 2306 80 0 20 chrX 24054580 24054881 -138545049 + AluSq SINE Alu 1 295 -18 2191 101 10 3 chrX 24054889 24055195 -138544735 + AluSq SINE Alu 5 312 -1 201 182 0 0 chrX 24055195 24055250 -138544680 + (TA)n Simple_repeat Simple_repeat 1 55 0 1504 99 9 0 chrX 24055250 24055461 -138544469 - MER4E LTR ERV1 -566 213 1 502 252 126 6 chrX 24056485 24056644 -138543286 - MER5A DNA MER1_type -1 188 11 239 20 61 20 chrX 24056746 24056795 -138543135 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1616 186 3 26 chrX 24057237 24057370 -138542560 + AluJo SINE Alu 6 141 -171 2156 80 6 77 chrX 24057370 24057694 -138542236 + AluSx SINE Alu 1 301 -11 1616 186 3 26 chrX 24057694 24057867 -138542063 + AluJo SINE Alu 141 305 -7 391 289 101 80 chrX 24058088 24058842 -138541088 + HAL1 LINE L1 817 1586 -921 319 278 69 93 chrX 24058872 24059088 -138540842 + HAL1 LINE L1 2283 2493 -14 182 250 145 13 chrX 24059579 24059655 -138540275 + L3 LINE CR1 302 387 -1190 351 296 127 9 chrX 24060329 24060542 -138539388 + L3b LINE CR1 1103 1340 -243 669 266 97 41 chrX 24060663 24060695 -138539235 - MLT2B2 LTR ERVL -46 474 445 2236 83 0 10 chrX 24060695 24060995 -138538935 + AluSx SINE Alu 2 298 -14 669 266 97 41 chrX 24060995 24061260 -138538670 - MLT2B2 LTR ERVL -75 445 147 26 0 0 0 chrX 24061834 24061860 -138538070 + AT_rich Low_complexity Low_complexity 1 26 0 2508 76 0 3 chrX 24062198 24062512 -138537418 + AluSq SINE Alu 1 313 0 494 101 0 0 chrX 24062556 24062625 -138537305 + MADE1 DNA Mariner 12 80 0 254 314 0 0 chrX 24062824 24062942 -138536988 + A-rich Low_complexity Low_complexity 1 118 0 30 45 0 0 chrX 24063050 24063094 -138536836 + AT_rich Low_complexity Low_complexity 1 44 0 200 358 13 40 chrX 24063274 24063425 -138536505 - L2 LINE L2 -885 2429 2283 537 242 88 22 chrX 24063894 24064076 -138535854 - LTR16C LTR ERVL 0 491 298 328 279 135 0 chrX 24065279 24065390 -138534540 + L2 LINE L2 3147 3272 0 2319 100 3 0 chrX 24065540 24065841 -138534089 - AluSp SINE Alu -11 302 1 189 322 0 17 chrX 24066648 24066707 -138533223 + MIR SINE MIR 84 141 -67 2335 84 0 7 chrX 24067832 24068005 -138531925 - AluSp SINE Alu -7 306 134 2545 43 0 0 chrX 24068005 24068307 -138531623 - AluY SINE Alu -9 302 1 2335 84 0 7 chrX 24068307 24068441 -138531489 - AluSp SINE Alu -179 134 1 403 283 25 17 chrX 24069117 24069237 -138530693 - L2 LINE L2 -16 3256 3136 283 243 14 0 chrX 24070428 24070498 -138529432 - MLT1J2 LTR MaLR 0 450 380 919 244 122 18 chrX 24070529 24070808 -138529122 - MLT1J2 LTR MaLR -137 313 6 189 0 0 0 chrX 24071776 24071797 -138528133 + (T)n Simple_repeat Simple_repeat 1 21 0 256 250 0 0 chrX 24071908 24071968 -138527962 + GA-rich Low_complexity Low_complexity 1 60 0 2464 63 13 0 chrX 24072284 24072584 -138527346 - AluSp SINE Alu -9 304 1 966 231 89 0 chrX 24073167 24073436 -138526494 - L1MC4 LINE L1 -143 7899 7607 247 241 0 24 chrX 24073827 24073839 -138526091 + A-rich Low_complexity Low_complexity 1 12 -69 2036 125 0 7 chrX 24073839 24074127 -138525803 + AluSg SINE Alu 1 286 -24 247 241 0 24 chrX 24074127 24074197 -138525733 + A-rich Low_complexity Low_complexity 12 81 0 628 302 93 0 chrX 24074208 24074423 -138525507 + L3 LINE CR1 570 804 -773 2094 184 11 61 chrX 24074428 24074977 -138524953 + L1M4 LINE L1 4842 5356 -850 2404 78 7 0 chrX 24074977 24075286 -138524644 + AluY SINE Alu 1 311 0 2094 184 11 61 chrX 24075286 24075357 -138524573 + L1M4 LINE L1 5356 5429 -777 7007 164 67 72 chrX 24075374 24076361 -138523569 + L1MC3 LINE L1 6148 7191 -594 240 175 18 20 chrX 24076361 24076427 -138523503 + MLT1E LTR MaLR 65 161 -388 7007 164 67 72 chrX 24076427 24077010 -138522920 + L1MC3 LINE L1 7191 7775 -10 981 275 108 33 chrX 24077056 24077624 -138522306 + L2 LINE L2 2585 3183 -130 192 296 31 51 chrX 24077676 24077774 -138522156 + L2 LINE L2 3200 3295 -18 753 323 53 30 chrX 24077790 24078128 -138521802 + L3 LINE CR1 916 1261 -316 277 200 35 82 chrX 24078126 24078211 -138521719 - L2 LINE L2 -1 3312 3232 * 197 354 100 64 chrX 24078234 24078514 -138521416 + L3 LINE CR1 1284 1573 -4 216 204 0 0 chrX 24078622 24078666 -138521264 + T-rich Low_complexity Low_complexity 1 44 0 3312 39 2 0 chrX 24078675 24079081 -138520849 - L1PA7 LINE L1 -2 6152 5746 1441 264 50 32 chrX 24079563 24079999 -138519931 - LTR33 LTR ERVL -20 501 58 259 211 35 0 chrX 24080010 24080067 -138519863 + L2 LINE L2 2722 2780 -534 576 247 28 6 chrX 24080542 24080720 -138519210 + L1M4 LINE L1 2210 2391 -3755 426 241 122 19 chrX 24080780 24081091 -138518839 + L1M4 LINE L1 2980 3322 -2824 1112 263 117 23 chrX 24081098 24081765 -138518165 + L1M4 LINE L1 3390 4142 -2004 2065 112 0 7 chrX 24081821 24082137 -138517793 + AluSq SINE Alu 1 314 0 349 259 162 20 chrX 24082141 24082338 -138517592 + L1M4 LINE L1 4150 4374 -1772 322 285 81 46 chrX 24082903 24083163 -138516767 - L1MEd LINE L1 -4956 1163 895 11246 191 18 18 chrX 24083248 24086017 -138513913 - L1PA16 LINE L1 -1 6165 3398 2352 90 10 0 chrX 24086017 24086318 -138513612 - AluSq SINE Alu -7 306 3 11246 191 18 18 chrX 24086318 24086848 -138513082 - L1PA16 LINE L1 -2768 3398 2871 1880 118 0 14 chrX 24086848 24087127 -138512803 - AluSx SINE Alu -7 305 31 11246 191 18 18 chrX 24087127 24087429 -138512501 - L1PA16 LINE L1 -3295 2871 2571 21 71 0 0 chrX 24087919 24087961 -138511969 + AT_rich Low_complexity Low_complexity 1 42 0 3137 158 26 33 chrX 24089723 24089952 -138509978 + MER6A DNA MER2_type 1 230 -635 369 0 0 0 chrX 24089952 24089993 -138509937 + (TG)n Simple_repeat Simple_repeat 2 42 0 3137 158 26 33 chrX 24089993 24090372 -138509558 + MER6A DNA MER2_type 230 605 0 407 284 10 0 chrX 24091262 24091364 -138508566 + L3 LINE CR1 400 502 -1075 307 311 50 25 chrX 24091582 24091743 -138508187 + L1MEd LINE L1 990 1154 -4965 574 318 87 48 chrX 24091834 24092028 -138507902 - L1M4 LINE L1 -1220 4926 4741 2433 64 0 0 chrX 24092028 24092326 -138507604 - AluY SINE Alu -13 298 1 574 318 87 48 chrX 24092326 24092908 -138507022 - L1M4 LINE L1 -1405 4741 4104 188 156 44 67 chrX 24092943 24092988 -138506942 - L2 LINE L2 -2 3270 3227 595 325 50 60 chrX 24093081 24093518 -138506412 - L2 LINE L2 -56 3257 2825 615 255 107 20 chrX 24093544 24093740 -138506190 - L2 LINE L2 -1081 2233 2021 225 195 0 0 chrX 24093727 24093768 -138506162 - L2 LINE L2 -45 3227 3187 * 567 343 140 43 chrX 24093829 24094485 -138505445 - L1M4 LINE L1 -2082 4064 3345 334 258 102 59 chrX 24094496 24094752 -138505178 - L1M4 LINE L1 -2877 3269 3003 882 187 0 0 chrX 24095155 24095325 -138504605 - AluJb SINE Alu 0 303 134 2181 89 51 3 chrX 24095325 24095618 -138504312 - AluSp SINE Alu -6 307 1 1030 325 99 11 chrX 24095738 24096191 -138503739 + L3 LINE CR1 1042 1534 -43 500 313 69 71 chrX 24096652 24096733 -138503197 - L1MEd LINE L1 -5345 774 694 1575 101 190 16 chrX 24096733 24096991 -138502939 - AluSp SINE Alu -10 303 1 500 313 69 71 chrX 24096991 24097388 -138502542 - L1MEd LINE L1 -5425 694 297 3146 215 74 28 chrX 24097443 24098263 -138501667 + L1ME1 LINE L1 5259 6116 -50 265 159 70 45 chrX 24098297 24098454 -138501476 + (TTATA)n Simple_repeat Simple_repeat 5 165 0 24 67 0 0 chrX 24098467 24098512 -138501418 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 24098619 24098640 -138501290 + AT_rich Low_complexity Low_complexity 1 21 0 523 332 62 13 chrX 24098868 24099094 -138500836 - MIR SINE MIR -7 255 19 4242 171 42 13 chrX 24099148 24100102 -138499828 - L1MB1 LINE L1 -75 6093 5110 1096 125 99 39 chrX 24100093 24100172 -138499758 + L1MA10 LINE L1 6082 6155 -179 * 243 88 0 0 chrX 24100172 24100206 -138499724 + (CA)n Simple_repeat Simple_repeat 1 34 0 1096 125 99 39 chrX 24100206 24100358 -138499572 + L1MA10 LINE L1 6155 6327 -7 1630 185 76 50 chrX 24100554 24100937 -138498993 + MSTD LTR MaLR 1 393 -3 258 382 50 23 chrX 24101383 24101603 -138498327 - L2 LINE L2 -479 2835 2610 3259 147 118 5 chrX 24301863 24302497 -138297433 - THE1C-int LTR MaLR -874 706 1 1739 140 75 28 chrX 24302497 24302855 -138297075 - THE1C LTR MaLR 0 375 1 235 233 0 0 chrX 24302855 24302915 -138297015 + MSTA LTR MaLR 171 230 -198 286 143 0 48 chrX 24302915 24302999 -138296931 + (TC)n Simple_repeat Simple_repeat 2 81 0 1195 296 18 24 chrX 24303616 24304069 -138295861 + L1ME1 LINE L1 249 698 -5698 2297 78 0 26 chrX 24304116 24304422 -138295508 + AluY SINE Alu 1 298 -13 2332 106 3 0 chrX 24304537 24304874 -138295056 + AluSq SINE Alu 1 338 0 1373 258 71 9 chrX 24304877 24305401 -138294529 + L1ME1 LINE L1 1512 2067 -4329 2208 208 66 55 chrX 24305402 24306051 -138293879 + L1ME1 LINE L1 5411 6066 -169 1149 23 0 0 chrX 24306079 24306211 -138293719 - L1PA5 LINE L1 -201 5953 5822 1198 58 13 0 chrX 24306212 24306368 -138293562 + L1PA5 LINE L1 5995 6152 -2 23 0 0 0 chrX 24306368 24306391 -138293539 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chrX 24306588 24306636 -138293294 + AT_rich Low_complexity Low_complexity 1 48 0 3489 77 24 16 chrX 24306722 24307230 -138292700 - L1MA1 LINE L1 -9 6293 5782 880 198 16 32 chrX 24307344 24307531 -138292399 + MER5A DNA MER1_type 4 187 -2 1466 268 102 7 chrX 24307968 24308389 -138291541 + LTR16B LTR ERVL 1 461 -3 22 70 0 0 chrX 24308588 24308631 -138291299 + AT_rich Low_complexity Low_complexity 1 43 0 279 313 15 30 chrX 24309066 24309200 -138290730 - MLT1K LTR MaLR -30 558 427 24 32 0 0 chrX 24309975 24310006 -138289924 + AT_rich Low_complexity Low_complexity 1 31 0 2190 74 0 18 chrX 24310192 24310477 -138289453 + AluSq SINE Alu 1 280 -33 405 0 0 0 chrX 24310477 24310522 -138289408 + (CA)n Simple_repeat Simple_repeat 1 45 0 252 250 0 0 chrX 24311237 24311289 -138288641 - MIR SINE MIR -1 261 210 231 36 0 0 chrX 24311291 24311319 -138288611 + (TC)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chrX 24311324 24311351 -138288579 + (TG)n Simple_repeat Simple_repeat 2 28 0 2289 122 26 3 chrX 24311362 24311706 -138288224 - MER46B DNA MER2_type -4 232 6 733 261 71 0 chrX 24311711 24311895 -138288035 - MIR SINE MIR -64 198 2 360 328 17 0 chrX 24311900 24312019 -138287911 - L2 LINE L2 -211 3061 2941 259 329 0 0 chrX 24312105 24312184 -138287746 - L2 LINE L2 -667 2647 2569 194 380 89 21 chrX 24312258 24312787 -138287143 + L3 LINE CR1 630 1194 -383 241 192 0 19 chrX 24313232 24313284 -138286646 + (CATATA)n Simple_repeat Simple_repeat 5 55 0 1133 229 58 99 chrX 24313314 24313971 -138285959 - L2 LINE L2 -9 3304 2686 1656 202 109 30 chrX 24313976 24314417 -138285513 + L1MB1 LINE L1 1 476 -6554 397 207 0 0 chrX 24314416 24314503 -138285427 + L1MB1 LINE L1 3914 4000 -3106 * 768 209 6 34 chrX 24314691 24314868 -138285062 - MER3 DNA MER1_type 0 209 38 1881 200 0 5 chrX 24314873 24315248 -138284682 - L1 LINE L1 -1968 4178 3806 2042 172 0 22 chrX 24315258 24315618 -138284312 + MLT1A1 LTR MaLR 12 363 -2 1929 205 12 2 chrX 24315619 24316033 -138283897 - L1 LINE L1 -2335 3811 3394 4600 193 28 31 chrX 24316046 24317419 -138282511 + L1MB1 LINE L1 5147 6450 -699 2501 39 0 0 chrX 24317419 24317703 -138282227 + AluY SINE Alu 14 297 -14 4600 193 28 31 chrX 24317703 24318365 -138281565 + L1MB1 LINE L1 6450 7113 -36 275 149 0 0 chrX 24318366 24318413 -138281517 - AluSc SINE Alu -4 295 249 2083 124 0 0 chrX 24318413 24318695 -138281235 - AluSc SINE Alu -27 282 1 468 51 0 0 chrX 24318712 24318771 -138281159 + (CA)n Simple_repeat Simple_repeat 2 60 0 943 135 0 0 chrX 24318813 24318969 -138280961 + L1MA10 LINE L1 6178 6333 -1 226 171 24 0 chrX 24318981 24319022 -138280908 - MER3 DNA MER1_type -167 42 1 22 56 0 0 chrX 24319659 24319695 -138280235 + AT_rich Low_complexity Low_complexity 1 36 0 402 242 117 95 chrX 24319801 24320074 -138279856 + LTR33A LTR ERVL 3 281 -242 186 43 0 0 chrX 24320248 24320271 -138279659 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1229 146 5 0 chrX 24320280 24320472 -138279458 - L1PA15 LINE L1 -4 6161 5969 825 160 13 6 chrX 24320587 24320760 -138279170 - L1P4 LINE L1 -699 5467 5290 388 274 56 138 chrX 24321294 24321721 -138278209 + L2 LINE L2 2922 3313 0 874 315 32 71 chrX 24321830 24322006 -138277924 + L1MEd LINE L1 42 223 -5896 9869 145 7 7 chrX 24322006 24322076 -138277854 + L1PA10 LINE L1 3539 3608 -2560 2246 100 0 10 chrX 24322076 24322376 -138277554 - AluSc SINE Alu -9 300 4 9869 145 7 7 chrX 24322376 24324917 -138275013 + L1PA10 LINE L1 3607 6166 -2 874 315 32 71 chrX 24324917 24325582 -138274348 + L1MEd LINE L1 223 850 -5269 290 67 22 0 chrX 24325837 24325882 -138274048 + (TA)n Simple_repeat Simple_repeat 2 47 0 239 250 13 79 chrX 24326282 24326358 -138273572 - MER5B DNA MER1_type -6 172 102 7622 179 17 9 chrX 24326361 24328660 -138271270 - L1PA16 LINE L1 -237 5929 3622 2446 76 0 3 chrX 24328837 24329140 -138270790 - AluY SINE Alu -8 303 2 38 22 0 0 chrX 24329355 24329400 -138270530 + AT_rich Low_complexity Low_complexity 1 45 0 339 113 0 0 chrX 24331041 24331094 -138268836 + (CA)n Simple_repeat Simple_repeat 2 54 0 696 286 58 46 chrX 24331295 24331624 -138268306 + MLT1I LTR MaLR 27 359 -50 203 159 45 0 chrX 24331625 24331669 -138268261 + A-rich Low_complexity Low_complexity 2 47 0 1706 57 0 3 chrX 24334196 24334476 -138265454 + MLT2A1 LTR ERVL 1 351 -93 1708 143 51 0 chrX 24334602 24334917 -138265013 + L1M2 LINE L1 2559 2889 -3960 1146 70 51 0 chrX 24335063 24335220 -138264710 - L1PA16 LINE L1 -250 5916 5752 451 163 116 12 chrX 24335222 24335308 -138264622 + 5S rRNA rRNA 2 96 -25 2258 80 13 13 chrX 24335737 24336039 -138263891 - AluSp SINE Alu -11 302 1 466 233 142 51 chrX 24336327 24336503 -138263427 - MLT1E2 LTR MaLR -371 255 64 620 228 117 33 chrX 24336622 24336929 -138263001 - L1M4 LINE L1 -933 5213 4881 2009 244 85 23 chrX 24336956 24337787 -138262143 - L1M4 LINE L1 -1335 4811 3929 521 221 53 44 chrX 24338062 24338288 -138261642 - Charlie1 DNA MER1_type -1 2760 2533 3630 191 49 33 chrX 24338301 24339566 -138260364 + L1MB8 LINE L1 4884 6178 0 18452 153 55 24 chrX 24339603 24342690 -138257240 + L1M1 LINE L1 12 3209 -4356 2033 136 0 3 chrX 24342690 24343000 -138256930 + AluSx SINE Alu 1 309 -3 18452 153 55 24 chrX 24343000 24343190 -138256740 + L1M1 LINE L1 3209 3392 -4173 7068 104 6 16 chrX 24343192 24344296 -138255634 + L1MA2 LINE L1 5212 6304 0 414 0 0 0 chrX 24345181 24345227 -138254703 + (TG)n Simple_repeat Simple_repeat 1 46 0 210 71 0 0 chrX 24345229 24345257 -138254673 + (GA)n Simple_repeat Simple_repeat 2 29 0 234 275 22 22 chrX 24347311 24347402 -138252528 - MLT1I LTR MaLR -264 145 55 587 133 95 0 chrX 24350248 24350353 -138249577 + FLAM_A SINE Alu 4 118 -15 1679 170 0 44 chrX 24351081 24351398 -138248532 + AluJb SINE Alu 1 303 -9 1748 155 0 57 chrX 24351571 24351887 -138248043 - AluJb SINE Alu -14 298 1 23 0 0 0 chrX 24352042 24352065 -138247865 + AT_rich Low_complexity Low_complexity 1 23 0 27 92 0 0 chrX 24353368 24353444 -138246486 + AT_rich Low_complexity Low_complexity 1 76 0 228 67 0 0 chrX 24354149 24354179 -138245751 + (TA)n Simple_repeat Simple_repeat 1 30 0 346 239 80 0 chrX 24354305 24354321 -138245609 - L1MA10 LINE L1 -3 6331 6316 488 301 50 37 chrX 24354321 24354643 -138245287 - L1ME1 LINE L1 -10 6156 5831 894 200 28 47 chrX 24354647 24354740 -138245190 + MLT1C LTR MaLR 7 100 -367 2595 129 31 10 chrX 24354740 24355157 -138244773 + MSTA LTR MaLR 3 428 0 894 200 28 47 chrX 24355157 24355318 -138244612 + MLT1C LTR MaLR 100 256 -211 902 182 39 107 chrX 24355319 24355599 -138244331 + MLT1B LTR MaLR 130 390 0 417 157 2 9 chrX 24355608 24355712 -138244218 - L1ME1 LINE L1 -366 5799 5703 237 312 81 11 chrX 24355780 24355966 -138243964 - L1ME1 LINE L1 -628 5550 5352 297 243 0 0 chrX 24356276 24356346 -138243584 - L1P LINE L1 -1177 4969 4900 30 45 0 0 chrX 24356749 24356793 -138243137 + AT_rich Low_complexity Low_complexity 1 44 0 313 274 105 0 chrX 24356808 24356903 -138243027 - L1ME1 LINE L1 -1554 4592 4488 309 95 0 0 chrX 24357230 24357272 -138242658 + LOR1b LTR ERV1 420 461 0 * 1850 220 67 18 chrX 24357272 24357815 -138242115 + Charlie2a DNA MER1_type 463 1032 -1830 295 254 50 54 chrX 24357844 24358104 -138241826 + Charlie2a DNA MER1_type 2238 2496 -366 788 229 43 91 chrX 24358106 24358547 -138241383 - LTR37B LTR ERV1 -48 420 1 444 276 42 14 chrX 24358592 24358809 -138241121 + Charlie2a DNA MER1_type 2549 2771 -91 1032 269 63 34 chrX 24359390 24359837 -138240093 + L1MEc LINE L1 57 516 -5880 1737 153 5 6 chrX 24360271 24360831 -138239099 - LTR39 LTR ERV1 0 783 164 2086 133 35 6 chrX 24361420 24361766 -138238164 - MER61D LTR ERV1 0 501 146 541 120 0 0 chrX 24361766 24361841 -138238089 - AluS SINE Alu -238 75 1 4108 162 17 26 chrX 24361841 24363047 -138236883 - MER61D-int LTR ERV1 -393 4824 3608 8482 38 8 2 chrX 24363047 24364048 -138235882 - LTR13 LTR ERVK 0 1007 1 4108 162 17 26 chrX 24364048 24364520 -138235410 - MER61D-int LTR ERV1 -1609 3608 3133 2338 73 7 7 chrX 24364520 24364821 -138235109 + AluSq SINE Alu 1 301 -12 4108 162 17 26 chrX 24364821 24364964 -138234966 - MER61D-int LTR ERV1 -2084 3133 598 638 156 22 37 chrX 24365345 24365480 -138234450 - MER61D-int LTR ERV1 -5068 149 17 2579 145 109 2 chrX 24365495 24365944 -138233986 - MER61D LTR ERV1 0 501 5 861 214 70 31 chrX 24366161 24366599 -138233331 + LTR48B LTR ERV1 137 644 0 2018 142 10 0 chrX 24366815 24367110 -138232820 - AluSx SINE Alu -14 298 1 1573 207 0 17 chrX 24367182 24367482 -138232448 - AluJo SINE Alu -17 295 1 3893 121 14 20 chrX 24367537 24368175 -138231755 - MER41B LTR ERV1 0 635 2 701 196 0 8 chrX 24368196 24368329 -138231601 - FLAM_C SINE Alu -11 132 1 320 284 21 5 chrX 24368435 24368633 -138231297 - L1M3 LINE L1 -365 5806 5605 2297 114 0 0 chrX 24368770 24369067 -138230863 - AluSg SINE Alu -13 297 1 1462 225 36 47 chrX 24369094 24369566 -138230364 - MLT1D LTR MaLR 0 505 39 216 0 0 0 chrX 24369566 24369590 -138230340 + (TA)n Simple_repeat Simple_repeat 2 25 0 2273 105 0 6 chrX 24369914 24370229 -138229701 - AluSq SINE Alu 0 313 1 2191 104 0 0 chrX 24371368 24371646 -138228284 + AluSx SINE Alu 1 278 -34 220 26 0 51 chrX 24371646 24371685 -138228245 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2744 84 16 0 chrX 24371693 24372062 -138227868 + THE1C LTR MaLR 1 375 0 189 302 123 28 chrX 24372908 24373014 -138226916 + MIR3 SINE MIR 12 127 -81 820 326 68 9 chrX 24373028 24373466 -138226464 - LTR16B LTR ERVL 0 464 1 275 287 59 40 chrX 24373467 24373568 -138226362 + MIR SINE MIR 159 261 -1 2237 156 5 5 chrX 24373652 24374042 -138225888 - MLT1B LTR MaLR 0 390 1 949 218 43 9 chrX 24374321 24374532 -138225398 + MER20 DNA MER1_type 1 218 -1 2246 34 0 0 chrX 24374589 24374858 -138225072 - L1PA4 LINE L1 0 6155 5887 2056 28 0 0 chrX 24374858 24375110 -138224820 + L1PA4 LINE L1 5641 5892 -263 733 243 92 5 chrX 24375110 24375316 -138224614 + HERVL68 LTR ERVL 4067 4290 -1240 764 265 74 27 chrX 24375319 24375617 -138224313 + HERVL68 LTR ERVL 2036 2347 -690 258 242 30 0 chrX 24375936 24376002 -138223928 + HERVL68 LTR ERVL 2635 2702 -335 263 315 2 32 chrX 24376737 24376871 -138223059 - MIR SINE MIR -73 135 6 1587 171 4 4 chrX 24377588 24377840 -138222090 + AluJo SINE Alu 47 298 -14 8179 57 6 214 chrX 24378962 24380708 -138219222 + SVA Other Other 1 1383 -3 2060 142 0 3 chrX 24380801 24381096 -138218834 + AluSx SINE Alu 1 294 -18 616 220 30 32 chrX 24381111 24381338 -138218592 + MLT1C LTR MaLR 194 377 -51 282 148 0 0 chrX 24381981 24382035 -138217895 + (TTC)n Simple_repeat Simple_repeat 1 54 0 2068 127 0 19 chrX 24384750 24385066 -138214864 + AluSq SINE Alu 1 310 -3 514 329 51 8 chrX 24385817 24386051 -138213879 - MIR SINE MIR -18 244 1 30 27 0 0 chrX 24386612 24386649 -138213281 + AT_rich Low_complexity Low_complexity 1 37 0 236 300 53 84 chrX 24387120 24387310 -138212620 - MIR SINE MIR -31 231 48 273 57 0 0 chrX 24387682 24387717 -138212213 - U2 snRNA snRNA -153 35 1 1945 125 3 99 chrX 24387820 24388204 -138211726 + MER7A DNA MER2_type 1 345 -1 1653 313 44 18 chrX 24388468 24389347 -138210583 + L2 LINE L2 2412 3313 0 296 238 12 60 chrX 24389388 24389472 -138210458 - L2 LINE L2 0 3313 3234 326 280 21 21 chrX 24389819 24389962 -138209968 - MLT1H LTR MaLR -395 154 12 2202 84 30 3 chrX 24390919 24391215 -138208715 - AluSp SINE Alu -9 304 1 25 0 0 0 chrX 24391323 24391348 -138208582 + AT_rich Low_complexity Low_complexity 1 25 0 2231 170 6 46 chrX 24391381 24391858 -138208072 - MER101 LTR ERV1 0 474 17 430 233 8 50 chrX 24392123 24392243 -138207687 - MER20 DNA MER1_type -103 116 2 376 314 8 8 chrX 24393159 24393277 -138206653 - MIR SINE MIR -140 122 5 3081 94 9 0 chrX 24393530 24393957 -138205973 - L1PA10 LINE L1 0 6168 5738 510 333 46 0 chrX 24395568 24395763 -138204167 + MIR SINE MIR 8 211 -51 238 248 57 67 chrX 24396674 24396779 -138203151 + MIR SINE MIR 51 154 -108 23 0 0 0 chrX 24396806 24396829 -138203101 + AT_rich Low_complexity Low_complexity 1 23 0 206 365 41 38 chrX 24396998 24397211 -138202719 - L2 LINE L2 -8 3264 3006 263 392 133 3 chrX 24397362 24397694 -138202236 - L2 LINE L2 -616 2698 2324 2572 62 0 0 chrX 24398425 24398734 -138201196 - AluY SINE Alu -2 309 1 1295 252 69 84 chrX 24400031 24400631 -138199299 + MLT1E LTR MaLR 1 591 -2 251 302 85 0 chrX 24401298 24401404 -138198526 - L2 LINE L2 -17 3296 3182 632 337 66 33 chrX 24401479 24401936 -138197994 + LTR33A LTR ERVL 1 472 -51 254 349 0 66 chrX 24401963 24402069 -138197861 - L2 LINE L2 -194 3078 2980 382 338 162 51 chrX 24402098 24402243 -138197687 - L2 LINE L2 -385 2929 2801 2292 101 0 0 chrX 24402243 24402530 -138197400 + AluSx SINE Alu 1 287 -25 194 0 0 37 chrX 24402530 24402557 -138197373 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 382 338 162 51 chrX 24402557 24402960 -138196970 - L2 LINE L2 -512 2802 2319 21 57 0 0 chrX 24405539 24405574 -138194356 + AT_rich Low_complexity Low_complexity 1 35 0 225 94 0 0 chrX 24407061 24407093 -138192837 + (T)n Simple_repeat Simple_repeat 1 32 0 2336 92 0 0 chrX 24407159 24407453 -138192477 - AluSx SINE Alu -18 294 1 280 167 0 0 chrX 24407579 24407633 -138192297 - L1M4 LINE L1 -1769 4377 4324 391 233 16 23 chrX 24407644 24407773 -138192157 - L1MB8 LINE L1 -12 6166 6039 * 577 165 68 11 chrX 24407772 24407948 -138191982 - L1M4 LINE L1 -756 5390 5205 * 1170 271 20 30 chrX 24407947 24408412 -138191518 - L1M4 LINE L1 -1327 4819 4357 2062 116 0 3 chrX 24408412 24408730 -138191200 - AluSx SINE Alu 0 317 1 1170 271 20 30 chrX 24408730 24408772 -138191158 - L1M4 LINE L1 -1789 4357 4316 453 269 162 0 chrX 24408771 24409042 -138190888 - L1MB7 LINE L1 -9 6175 5861 * 1127 283 49 21 chrX 24409093 24409663 -138190267 - L1MB7 LINE L1 -443 5723 5134 414 0 0 0 chrX 24409665 24409711 -138190219 + (TG)n Simple_repeat Simple_repeat 1 46 0 1382 143 55 48 chrX 24409802 24410075 -138189855 - AluJo SINE Alu -11 301 27 497 220 31 78 chrX 24410147 24410241 -138189689 - L1MB7 LINE L1 -1448 4698 4616 2401 76 0 0 chrX 24410241 24410544 -138189386 - AluY SINE Alu -8 303 1 497 220 31 78 chrX 24410544 24410640 -138189290 - L1MB7 LINE L1 -1530 4616 4517 525 268 60 89 chrX 24410655 24411036 -138188894 - L1ME LINE L1 -362 5807 5442 1550 153 4 0 chrX 24411036 24411278 -138188652 - AluJo SINE Alu -23 289 47 525 268 60 89 chrX 24411278 24411445 -138188485 - L1ME LINE L1 -727 5442 5272 1017 190 20 75 chrX 24411500 24411571 -138188359 - L1PB4 LINE L1 -13 6143 6070 209 57 29 0 chrX 24411571 24411606 -138188324 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2278 103 0 0 chrX 24411606 24411907 -138188023 - AluSg SINE Alu -9 301 1 1017 190 20 75 chrX 24411907 24412087 -138187843 - L1PB4 LINE L1 -84 6072 5905 1005 272 92 47 chrX 24412120 24413048 -138186882 - L1ME LINE L1 -857 5289 4321 * 1728 263 31 29 chrX 24413044 24413614 -138186316 - L1MB7 LINE L1 -3 6181 5608 2439 90 0 3 chrX 24413614 24413926 -138186004 - AluSp SINE Alu 0 313 3 1728 263 31 29 chrX 24413926 24414096 -138185834 - L1MB7 LINE L1 -576 5608 5440 1780 152 0 31 chrX 24414097 24414386 -138185544 + AluJb SINE Alu 1 280 -32 183 42 0 0 chrX 24414386 24414410 -138185520 + (TTAAA)n Simple_repeat Simple_repeat 2 25 0 1587 256 71 56 chrX 24414422 24414576 -138185354 - L1MB7 LINE L1 -1 6183 6033 2201 121 13 0 chrX 24414576 24414883 -138185047 + AluSx SINE Alu 1 311 -1 1587 256 71 56 chrX 24414883 24415273 -138184657 - L1MB7 LINE L1 -151 6033 5650 2270 109 0 6 chrX 24415273 24415585 -138184345 + AluSg SINE Alu 1 310 0 1587 256 71 56 chrX 24415585 24416689 -138183241 - L1MB7 LINE L1 -534 5650 4517 389 278 87 23 chrX 24416691 24417107 -138182823 - L1ME LINE L1 -351 5815 5358 663 253 55 0 chrX 24417131 24417388 -138182542 - L1ME LINE L1 -1560 4586 4316 1169 296 48 12 chrX 24417433 24418021 -138181909 - L1MB7 LINE L1 -60 6124 5516 1139 242 74 55 chrX 24418021 24418438 -138181492 + L1MD2 LINE L1 5812 6236 -123 924 161 32 37 chrX 24418441 24418659 -138181271 - L1MB2 LINE L1 -2 6169 5953 384 22 0 0 chrX 24418659 24418704 -138181226 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 2364 90 0 0 chrX 24418704 24419014 -138180916 - AluSg SINE Alu 0 310 1 2875 147 35 39 chrX 24419014 24419557 -138180373 - L1MB2 LINE L1 -215 5968 5428 * 5961 145 20 26 chrX 24419553 24420624 -138179306 - L1MA9 LINE L1 0 6312 5250 1921 131 134 33 chrX 24420624 24421013 -138178917 - MSTA LTR MaLR 0 428 1 5961 145 20 26 chrX 24421013 24421241 -138178689 - L1MA9 LINE L1 -1062 5250 5022 671 161 0 0 chrX 24421241 24421355 -138178575 + L1MD1 LINE L1 6117 6240 -2 225 80 40 20 chrX 24422368 24422418 -138177512 + CT-rich Low_complexity Low_complexity 2 52 0 276 30 0 0 chrX 24422421 24422454 -138177476 + (TG)n Simple_repeat Simple_repeat 2 34 0 2527 212 51 47 chrX 24422641 24423186 -138176744 - MER76 LTR ERV 0 688 147 2336 91 10 0 chrX 24423186 24423483 -138176447 + AluSx SINE Alu 1 300 -12 378 0 0 0 chrX 24423483 24423525 -138176405 + (TA)n Simple_repeat Simple_repeat 2 43 0 2527 212 51 47 chrX 24423525 24423663 -138176267 - MER76 LTR ERV -540 148 1 2220 226 53 13 chrX 24424244 24424926 -138175004 - L1MB2 LINE L1 -785 5361 4653 197 321 125 24 chrX 24425427 24425595 -138174335 + MIR SINE MIR 53 237 -25 188 312 0 52 chrX 24426366 24426443 -138173487 - MIR SINE MIR -178 84 12 853 258 15 49 chrX 24426728 24426992 -138172938 + MLT1E LTR MaLR 22 276 -317 441 186 12 0 chrX 24426994 24427080 -138172850 + MLT1F1 LTR MaLR 481 567 0 811 250 77 15 chrX 24427530 24427790 -138172140 - MLT1B LTR MaLR 0 467 192 775 122 0 0 chrX 24427832 24427947 -138171983 - AluSc SINE Alu -7 302 188 852 196 18 0 chrX 24427947 24428115 -138171815 - MLT1B LTR MaLR -219 171 1 265 304 180 37 chrX 24428703 24428864 -138171066 + MIR SINE MIR 8 191 -71 213 345 127 0 chrX 24429197 24429339 -138170591 - MIR SINE MIR -55 207 48 26 0 0 0 chrX 24431134 24431160 -138168770 + AT_rich Low_complexity Low_complexity 1 26 0 188 86 29 0 chrX 24431636 24431671 -138168259 + (TA)n Simple_repeat Simple_repeat 2 37 0 312 254 0 91 chrX 24432780 24432945 -138166985 + MIR SINE MIR 57 206 -56 797 196 0 12 chrX 24432983 24433156 -138166774 + L1MA6 LINE L1 4316 4486 -1660 1325 199 14 36 chrX 24433156 24433433 -138166497 + AluJo SINE Alu 27 297 -15 4589 165 37 38 chrX 24433433 24433563 -138166367 + L1MA6 LINE L1 4485 4614 -1686 2061 115 7 0 chrX 24433563 24433842 -138166088 + AluSx SINE Alu 15 295 -17 4589 165 37 38 chrX 24433842 24434576 -138165354 + L1MA6 LINE L1 4614 5375 -925 2292 100 0 0 chrX 24434576 24434867 -138165063 + AluSc SINE Alu 5 295 -14 4589 165 37 38 chrX 24434867 24435286 -138164644 + L1MA6 LINE L1 5375 5793 -507 351 285 11 17 chrX 24435286 24435465 -138164465 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 2592 144 30 55 chrX 24435488 24435535 -138164395 + L1MA6 LINE L1 5783 5830 -470 2829 10 0 0 chrX 24435535 24435843 -138164087 + AluYa5 SINE Alu 1 308 -3 2592 144 30 55 chrX 24435843 24436303 -138163627 + L1MA6 LINE L1 5830 6277 -23 1163 113 0 0 chrX 24436541 24436716 -138163214 + AluSp SINE Alu 132 306 0 22 56 0 0 chrX 24437415 24437451 -138162479 + AT_rich Low_complexity Low_complexity 1 36 0 369 43 0 0 chrX 24437593 24437602 -138162328 + (CA)n Simple_repeat Simple_repeat 1 56 0 369 43 0 0 chrX 24437602 24437649 -138162281 + (CA)n Simple_repeat Simple_repeat 1 47 0 2346 62 3 7 chrX 24439606 24439895 -138160035 + AluSg SINE Alu 1 288 -22 198 71 0 0 chrX 24439909 24439937 -138159993 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 228 254 0 16 chrX 24440274 24440337 -138159593 + A-rich Low_complexity Low_complexity 3 64 0 27 73 0 0 chrX 24441008 24441063 -138158867 + AT_rich Low_complexity Low_complexity 1 55 0 289 203 0 16 chrX 24442330 24442394 -138157536 - LTR37B LTR ERV1 -398 70 8 21 36 0 0 chrX 24442781 24442809 -138157121 + AT_rich Low_complexity Low_complexity 1 28 0 2275 83 3 0 chrX 24443186 24443474 -138156456 - AluSp SINE Alu -24 289 1 238 250 0 0 chrX 24443478 24443526 -138156404 + (TG)n Simple_repeat Simple_repeat 2 49 0 1517 173 100 23 chrX 24443588 24443944 -138155986 - L1MB1 LINE L1 0 6168 5786 293 293 143 23 chrX 24444289 24444422 -138155508 - MIR SINE MIR -96 166 18 342 0 0 0 chrX 24444557 24444595 -138155335 + (TG)n Simple_repeat Simple_repeat 2 39 0 2316 67 0 0 chrX 24444771 24445071 -138154859 - L1PA5 LINE L1 -6 6148 5849 28911 69 4 0 chrX 24445072 24448811 -138151119 - L1P LINE L1 -2390 3756 4 2046 120 32 0 chrX 24448814 24449097 -138150833 - AluSq SINE Alu -19 294 3 369 83 44 83 chrX 24449113 24449293 -138150637 + (TTAAA)n Simple_repeat Simple_repeat 5 177 0 192 152 0 0 chrX 24449570 24449603 -138150327 + (TA)n Simple_repeat Simple_repeat 1 33 0 248 111 0 0 chrX 24449612 24449657 -138150273 - LTR66 LTR ERVL -172 438 394 642 308 79 7 chrX 24450102 24450394 -138149536 + MLT1I LTR MaLR 96 408 -1 702 293 68 43 chrX 24451825 24452221 -138147709 + MLT1I LTR MaLR 1 406 -3 2400 114 22 6 chrX 24452245 24452603 -138147327 - THE1B LTR MaLR 0 364 1 1611 228 96 64 chrX 24453140 24453764 -138146166 + L1MC4 LINE L1 6579 7182 -860 1218 189 49 35 chrX 24453764 24453874 -138146056 + AluJo SINE Alu 2 109 -193 441 0 0 0 chrX 24453874 24453923 -138146007 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1218 189 49 35 chrX 24453923 24453943 -138145987 + AluJo SINE Alu 109 127 -175 1894 153 0 3 chrX 24453943 24454231 -138145699 + AluSx SINE Alu 3 289 -23 1147 76 12 12 chrX 24454236 24454408 -138145522 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 1218 189 49 35 chrX 24454408 24454556 -138145374 + AluJo SINE Alu 130 291 -11 1611 228 96 64 chrX 24454556 24454568 -138145362 + L1MC4 LINE L1 7182 7192 -850 23 0 0 0 chrX 24454568 24454591 -138145339 + AT_rich Low_complexity Low_complexity 1 23 0 1611 228 96 64 chrX 24454591 24455084 -138144846 + L1MC4 LINE L1 7192 7760 -282 1963 122 7 7 chrX 24455084 24455372 -138144558 + AluJb SINE Alu 11 298 -14 1611 228 96 64 chrX 24455372 24455537 -138144393 + L1MC4 LINE L1 7760 7918 -124 518 348 147 12 chrX 24455682 24456104 -138143826 + L2 LINE L2 1909 2387 -927 268 152 288 0 chrX 24456226 24456292 -138143638 - L2 LINE L2 0 3313 3229 182 298 40 111 chrX 24456568 24456793 -138143137 + L2 LINE L2 2678 2886 -428 1752 129 17 28 chrX 24457667 24458012 -138141918 - MER61B LTR ERV1 0 425 1 828 275 35 72 chrX 24459447 24459533 -138140397 - MLT1I LTR MaLR -2 407 319 2404 61 0 0 chrX 24459533 24459839 -138140091 - AluSg SINE Alu 0 306 1 828 275 35 72 chrX 24459839 24460126 -138139804 - MLT1I LTR MaLR -90 319 47 195 42 0 0 chrX 24460155 24460179 -138139751 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 775 157 0 0 chrX 24460182 24460297 -138139633 - FLAM_C SINE Alu -18 115 1 219 327 109 10 chrX 24461416 24461517 -138138413 - L2 LINE L2 -8 3264 3154 2726 106 22 26 chrX 24461569 24462023 -138137907 + L1MA5 LINE L1 5844 6295 -5 231 61 0 0 chrX 24462140 24462173 -138137757 + LTR49 LTR ERV1 1 33 -562 4010 107 14 87 chrX 24462173 24462475 -138137455 - MER39B LTR ERV1 0 653 331 2137 100 7 0 chrX 24462475 24462816 -138137114 - AluSp SINE Alu 0 343 1 4010 107 14 87 chrX 24462816 24462839 -138137091 - MER39B LTR ERV1 -322 331 308 5935 114 16 19 chrX 24462839 24463682 -138136248 - L1PA16 LINE L1 -9 6157 5323 2515 7 0 0 chrX 24463682 24463955 -138135975 - AluYa5 SINE Alu -3 308 36 5935 114 16 19 chrX 24463955 24464664 -138135266 - L1PA16 LINE L1 -843 5323 4614 4010 107 14 87 chrX 24464664 24465040 -138134890 - MER39B LTR ERV1 -345 308 1 2858 157 59 9 chrX 24465040 24465572 -138134358 + LTR49 LTR ERV1 31 589 -6 272 239 28 14 chrX 24465633 24465704 -138134226 - Charlie8 DNA MER1_type -2317 100 29 473 284 33 76 chrX 24466192 24466467 -138133463 - LTR16A1 LTR ERVL -88 369 107 765 202 40 17 chrX 24466631 24466802 -138133128 + MSTA LTR MaLR 1 175 -253 1161 162 25 30 chrX 24466802 24467037 -138132893 - THE1C LTR MaLR 0 375 142 287 77 0 0 chrX 24467014 24467053 -138132877 - THE1C LTR MaLR -389 39 1 * 10085 122 47 6 chrX 24467053 24468571 -138131359 - THE1C-int LTR MaLR 0 1580 1 1739 140 75 28 chrX 24468571 24468929 -138131001 - THE1C LTR MaLR 0 375 1 1100 156 156 13 chrX 24468929 24468969 -138130961 + MSTA LTR MaLR 171 204 -224 756 33 0 0 chrX 24468969 24469060 -138130870 + (TC)n Simple_repeat Simple_repeat 1 91 0 1100 156 156 13 chrX 24469060 24469243 -138130687 + MSTA LTR MaLR 204 426 -2 716 277 44 44 chrX 24469612 24469977 -138129953 - LTR24B LTR ERV1 -5 571 207 366 197 18 26 chrX 24470016 24470116 -138129814 - LTR24B LTR ERV1 -368 97 1 777 254 124 9 chrX 24470974 24471191 -138128739 + LTR16A LTR ERVL 104 345 -105 363 297 95 27 chrX 24471246 24471394 -138128536 + HERV16 LTR ERVL 2 159 -4837 642 120 46 0 chrX 24471417 24471525 -138128405 - L1MA6 LINE L1 -9 6291 6179 525 187 11 0 chrX 24471553 24471644 -138128286 - AluJ/FLAM SINE Alu -220 92 1 1703 161 0 0 chrX 24471645 24471931 -138127999 - L1MA6 LINE L1 -110 6190 5905 2586 134 26 16 chrX 24471946 24472372 -138127558 + Tigger1 DNA MER2_type 30 459 -1959 2140 148 46 0 chrX 24472356 24472729 -138127201 + Tigger1 DNA MER2_type 2028 2417 -1 * 3345 154 27 9 chrX 24472730 24474349 -138125581 - L1MA6 LINE L1 -394 5906 4217 2132 202 78 12 chrX 24474343 24475029 -138124901 - L1M4 LINE L1 -3441 4124 3356 * 452 303 21 0 chrX 24475029 24475174 -138124756 + HERV16 LTR ERVL 145 292 -4704 574 193 143 0 chrX 24475198 24475338 -138124592 + MER58C DNA MER1_type 56 215 0 588 312 9 23 chrX 24475342 24475557 -138124373 + HERV16 LTR ERVL 311 522 -4474 * 709 351 78 33 chrX 24475554 24476498 -138123432 + MERVL LTR ERVL 3005 3991 -1494 465 257 121 14 chrX 24476573 24476713 -138123217 + MERVL LTR ERVL 4143 4297 -1467 617 299 119 42 chrX 24476729 24477411 -138122519 + LTR41 LTR ERVL 15 748 -25 356 308 69 6 chrX 24478746 24478905 -138121025 - LTR16A LTR ERVL -179 271 103 267 341 61 23 chrX 24479501 24479715 -138120215 - HERV16 LTR ERVL -752 4902 4681 1778 29 0 0 chrX 24479757 24479966 -138119964 - L1PA3 LINE L1 0 6155 5947 628 143 0 10 chrX 24480082 24480180 -138119750 + MSTA LTR MaLR 1 97 -331 1017 138 117 11 chrX 24480184 24480372 -138119558 + MSTA LTR MaLR 221 428 0 2641 314 47 46 chrX 24480372 24481134 -138118796 - HERV16 LTR ERVL -1199 4565 3805 2481 67 0 3 chrX 24481134 24481433 -138118497 + AluY SINE Alu 1 298 -13 2641 314 47 46 chrX 24481433 24482393 -138117537 - HERV16 LTR ERVL -1959 3805 2754 367 296 53 0 chrX 24482384 24482516 -138117414 - HERV16 LTR ERVL -4596 400 262 * 3619 182 53 14 chrX 24482568 24483359 -138116571 - L1MB8 LINE L1 -2 6176 5355 709 231 17 97 chrX 24483410 24483648 -138116282 - HERV16 LTR ERVL -4777 219 1 845 314 76 7 chrX 24483649 24484069 -138115861 - LTR16A LTR ERVL -1 449 1 21 36 0 0 chrX 24484360 24484388 -138115542 + AT_rich Low_complexity Low_complexity 1 28 0 2651 97 13 8 chrX 24485168 24485541 -138114389 - THE1C LTR MaLR 0 375 1 279 133 0 0 chrX 24485662 24485707 -138114223 + (CA)n Simple_repeat Simple_repeat 2 46 0 597 172 60 9 chrX 24486007 24486123 -138113807 - FLAM_C SINE Alu -17 126 5 420 66 0 6 chrX 24486205 24486265 -138113665 + MLT2A1 LTR ERVL 392 444 0 2514 188 38 11 chrX 24486265 24486818 -138113112 - L1MB8 LINE L1 -2059 4087 3520 1894 182 48 116 chrX 24486818 24487515 -138112415 - MER61E LTR ERV1 0 779 1 4118 230 29 16 chrX 24487517 24488679 -138111251 - L1MB8 LINE L1 -2625 3521 2344 360 0 0 0 chrX 24488695 24488735 -138111195 + (TA)n Simple_repeat Simple_repeat 2 41 0 2474 185 42 18 chrX 24488743 24489048 -138110882 - LTR54 LTR ERV1 0 510 187 377 135 52 31 chrX 24489048 24489144 -138110786 + L1MA4A LINE L1 6204 6301 -2 2474 185 42 18 chrX 24489144 24489336 -138110594 - LTR54 LTR ERV1 -323 187 1 22 0 0 0 chrX 24489573 24489595 -138110335 + AT_rich Low_complexity Low_complexity 1 22 0 1876 26 18 0 chrX 24489825 24490051 -138109879 - L1PA4 LINE L1 -2 6153 5924 459 0 0 0 chrX 24490095 24490146 -138109784 + (CA)n Simple_repeat Simple_repeat 2 52 0 192 330 130 0 chrX 24490196 24490296 -138109634 - L2 LINE L2 -4 3268 3156 330 282 26 34 chrX 24490962 24491079 -138108851 + MIR SINE MIR 73 188 -74 301 136 37 49 chrX 24491095 24491176 -138108754 + MER116 DNA Mariner 1 80 0 310 298 73 48 chrX 24492167 24492415 -138107515 - L3b LINE CR1 -228 1355 1102 1052 274 97 65 chrX 24492706 24493242 -138106688 + MLT1H1 LTR MaLR 1 553 -2 232 233 150 0 chrX 24493557 24493617 -138106313 + MLT1H1 LTR MaLR 206 274 -281 198 0 0 0 chrX 24494382 24494404 -138105526 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 261 0 0 0 chrX 24494403 24494432 -138105498 + (CA)n Simple_repeat Simple_repeat 1 29 0 186 43 0 0 chrX 24494992 24495015 -138104915 + (TC)n Simple_repeat Simple_repeat 2 24 0 1046 250 0 18 chrX 24495058 24495282 -138104648 - AluJo SINE Alu -92 220 1 1458 265 58 14 chrX 24495422 24495857 -138104073 + MER69 DNA AcHobo 1 455 -2071 3741 138 63 78 chrX 24495857 24496654 -138103276 - LTR1 LTR ERV1 0 785 1 1856 250 46 49 chrX 24496698 24497351 -138102579 + MER69 DNA AcHobo 453 1103 -1423 255 277 48 26 chrX 24497411 24497543 -138102387 + MIR SINE MIR 21 151 -73 7259 142 14 7 chrX 24498723 24500723 -138099207 + L1PA10 LINE L1 4164 6166 -2 1411 193 33 95 chrX 24500723 24500764 -138099166 + Charlie1 DNA MER1_type 2266 2308 -453 423 0 0 0 chrX 24500764 24500811 -138099119 + (CA)n Simple_repeat Simple_repeat 2 48 0 1411 193 33 95 chrX 24500811 24501287 -138098643 + Charlie1 DNA MER1_type 2308 2751 -10 1168 194 76 7 chrX 24502027 24502315 -138097615 - MER33 DNA MER1_type -16 308 1 2025 116 17 3 chrX 24502738 24503032 -138096898 - AluSx SINE Alu -14 298 1 230 160 40 0 chrX 24503208 24503258 -138096672 - L2 LINE L2 0 3313 3262 2748 244 60 81 chrX 24503322 24504651 -138095279 - L1MD3 LINE L1 -27 7968 6667 1669 157 89 19 chrX 24504692 24505005 -138094925 + MER1B DNA MER1_type 3 337 0 315 372 148 22 chrX 24505108 24505385 -138094545 + L2 LINE L2 1104 1415 -1899 210 71 0 0 chrX 24505444 24505472 -138094458 + (CA)n Simple_repeat Simple_repeat 2 29 0 1026 238 19 0 chrX 24505962 24506176 -138093754 + MER20 DNA MER1_type 2 219 0 534 337 76 37 chrX 24506264 24506833 -138093097 + L2 LINE L2 1791 2381 -933 325 288 92 50 chrX 24507086 24507277 -138092653 + L2 LINE L2 2790 2986 -327 500 240 16 8 chrX 24507323 24507444 -138092486 + L1ME LINE L1 5493 5614 -556 482 127 13 0 chrX 24507548 24507627 -138092303 + MADE1 DNA Mariner 1 80 0 279 0 0 0 chrX 24509134 24509165 -138090765 + (TA)n Simple_repeat Simple_repeat 1 31 0 4243 127 57 0 chrX 24509166 24509838 -138090092 - L1PA16 LINE L1 -9 6157 5448 23 33 0 0 chrX 24510597 24510627 -138089303 + AT_rich Low_complexity Low_complexity 1 30 0 760 155 0 0 chrX 24511976 24512092 -138087838 - FLAM_C SINE Alu -17 116 1 222 62 0 0 chrX 24512140 24512172 -138087758 + (TA)n Simple_repeat Simple_repeat 1 32 0 181 130 65 0 chrX 24512625 24512671 -138087259 + CT-rich Low_complexity Low_complexity 1 49 0 187 281 8 107 chrX 24512765 24512886 -138087044 - MIR SINE MIR -56 206 98 2027 109 6 34 chrX 24513566 24513888 -138086042 - AluSq SINE Alu 0 313 1 2379 126 55 36 chrX 24513899 24513951 -138085979 - L1MB3 LINE L1 -1 6182 6132 2354 91 3 0 chrX 24513951 24514247 -138085683 - AluSq SINE Alu -16 297 1 2379 126 55 36 chrX 24514247 24514663 -138085267 - L1MB3 LINE L1 -51 6132 5705 21 36 0 0 chrX 24516024 24516052 -138083878 + AT_rich Low_complexity Low_complexity 1 28 0 1492 290 58 8 chrX 24516083 24516587 -138083343 + L2 LINE L2 1947 2475 -839 310 303 166 42 chrX 24516574 24516858 -138083072 + L2 LINE L2 2951 3269 -44 * 1829 129 25 0 chrX 24516874 24516995 -138082935 + AluSx SINE Alu 1 117 -198 243 0 0 0 chrX 24516995 24517022 -138082908 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1829 129 25 0 chrX 24517022 24517208 -138082722 + AluSx SINE Alu 117 315 0 26 64 0 0 chrX 24519157 24519204 -138080726 + AT_rich Low_complexity Low_complexity 1 47 0 622 249 42 82 chrX 24519540 24519945 -138079985 + LTR15 LTR ERV1 105 493 0 3887 170 10 44 chrX 24519990 24520822 -138079108 + L1ME1 LINE L1 5470 6236 -50 355 275 41 102 chrX 24520873 24521335 -138078595 + L1ME3A LINE L1 5681 6114 -56 1524 142 0 0 chrX 24522087 24522306 -138077624 - AluJb SINE Alu -13 299 81 2203 121 0 0 chrX 24522566 24522863 -138077067 + AluSx SINE Alu 1 297 -15 2055 92 78 0 chrX 24523202 24523483 -138076447 - AluSp SINE Alu -10 303 1 262 200 109 18 chrX 24523799 24523909 -138076021 - Zaphod DNA AcHobo -302 3729 3610 * 290 182 141 79 chrX 24523900 24524191 -138075739 - Zaphod DNA AcHobo -3023 1008 700 290 266 101 18 chrX 24524191 24524300 -138075630 - Zaphod DNA AcHobo -3905 126 9 209 294 15 15 chrX 24525664 24525732 -138074198 + L2 LINE L2 3205 3272 0 23 54 0 0 chrX 24526568 24526605 -138073325 + AT_rich Low_complexity Low_complexity 1 37 0 510 139 40 0 chrX 24527379 24527530 -138072400 + (TA)n Simple_repeat Simple_repeat 1 157 0 2321 87 0 0 chrX 24527530 24527819 -138072111 - AluSx SINE Alu -23 289 1 26 50 0 0 chrX 24529532 24529572 -138070358 + AT_rich Low_complexity Low_complexity 1 40 0 247 336 161 7 chrX 24530213 24530350 -138069580 - MIR SINE MIR -10 252 95 273 146 0 0 chrX 24531518 24531566 -138068364 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 32 0 0 chrX 24531575 24531606 -138068324 + AT_rich Low_complexity Low_complexity 1 31 0 1430 314 36 6 chrX 24531742 24532246 -138067684 + HERVL LTR ERVL 2181 2699 -2297 430 113 0 0 chrX 24532532 24532594 -138067336 + L1P LINE L1 5186 5247 -899 20759 53 0 3 chrX 24532609 24536046 -138063884 - L1PA6 LINE L1 -17 6137 2707 568 315 5 12 chrX 24536065 24536255 -138063675 + HERVL LTR ERVL 3002 3189 -1900 29 47 0 0 chrX 24536498 24536541 -138063389 + AT_rich Low_complexity Low_complexity 1 43 0 368 20 0 20 chrX 24536666 24536716 -138063214 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 27 0 0 0 chrX 24537065 24537092 -138062838 + AT_rich Low_complexity Low_complexity 1 27 0 280 335 66 6 chrX 24537653 24537820 -138062110 - MLT1K LTR MaLR -34 554 378 198 380 13 0 chrX 24539536 24539615 -138060315 + MIR SINE MIR 73 152 -110 482 374 6 0 chrX 24539727 24539898 -138060032 - MER91A DNA MER1_type -13 183 12 595 103 9 9 chrX 24540135 24540242 -138059688 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 258 95 0 0 chrX 24540539 24540581 -138059349 + (GA)n Simple_repeat Simple_repeat 1 42 0 417 220 22 0 chrX 24540584 24540675 -138059255 - MLT2F LTR ERVL -55 608 516 299 331 63 16 chrX 24540704 24540831 -138059099 - MLT2F LTR ERVL -353 310 178 798 266 44 57 chrX 24541107 24541495 -138058435 + L1MC/D LINE L1 5299 5681 -2127 * 3813 199 52 26 chrX 24541476 24542475 -138057455 + L1MB3 LINE L1 5096 6137 -46 536 284 68 72 chrX 24542812 24542866 -138057064 + L1ME3A LINE L1 5489 5542 -628 1694 188 7 3 chrX 24542866 24543169 -138056761 + AluJb SINE Alu 4 307 -5 536 284 68 72 chrX 24543169 24543332 -138056598 + L1ME3A LINE L1 5542 5704 -466 2208 48 0 7 chrX 24543332 24543602 -138056328 + AluY SINE Alu 38 305 -6 536 284 68 72 chrX 24543602 24543841 -138056089 + L1ME3A LINE L1 5704 5944 -226 327 344 47 42 chrX 24543919 24544111 -138055819 + L1ME3A LINE L1 5977 6169 -1 21 0 0 0 chrX 24544605 24544626 -138055304 + AT_rich Low_complexity Low_complexity 1 21 0 314 365 62 10 chrX 24545077 24545285 -138054645 - MIR SINE MIR -10 252 34 441 300 47 11 chrX 24545343 24545533 -138054397 - LTR33A LTR ERVL -2 521 325 4494 148 12 12 chrX 24545533 24546926 -138053004 + L1PA15 LINE L1 4512 5907 -258 585 317 44 0 chrX 24547649 24547832 -138052098 - MIR SINE MIR -28 234 44 21 71 0 0 chrX 24548178 24548220 -138051710 + AT_rich Low_complexity Low_complexity 1 42 0 198 277 27 80 chrX 24549121 24549233 -138050697 + MIR SINE MIR 86 191 -71 3053 210 44 49 chrX 24549933 24550372 -138049558 - L1M2 LINE L1 -4738 2471 2031 2287 103 0 3 chrX 24550372 24550672 -138049258 - AluSq SINE Alu -14 299 1 3053 210 44 49 chrX 24550672 24551813 -138048117 - L1M2 LINE L1 -5178 2031 1 22 35 0 0 chrX 24552841 24552870 -138047060 + AT_rich Low_complexity Low_complexity 1 29 0 362 252 29 10 chrX 24552949 24553052 -138046878 - L1ME LINE L1 -400 5721 5617 31 0 0 0 chrX 24553260 24553291 -138046639 + AT_rich Low_complexity Low_complexity 1 31 0 11476 130 11 25 chrX 24553599 24554044 -138045886 + Tigger1 DNA MER2_type 2 452 -1966 2027 131 0 39 chrX 24554044 24554356 -138045574 - AluSx SINE Alu -10 302 3 11476 130 11 25 chrX 24554356 24556362 -138043568 + Tigger1 DNA MER2_type 452 2418 0 502 261 149 37 chrX 24557259 24557420 -138042510 - MER5A DNA MER1_type -1 188 10 389 280 70 91 chrX 24558735 24559019 -138040911 - LTR16C LTR ERVL -88 403 125 2109 74 64 3 chrX 24559019 24559302 -138040628 + AluSq SINE Alu 1 300 -13 389 280 70 91 chrX 24559302 24559346 -138040584 - LTR16C LTR ERVL -366 125 82 308 24 24 0 chrX 24559794 24559835 -138040095 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4528 39 4 0 chrX 24559835 24560377 -138039553 - L1PA5 LINE L1 -11 6143 5600 219 103 0 0 chrX 24560507 24560546 -138039384 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2043 174 60 19 chrX 24560953 24561368 -138038562 + MSTB1 LTR MaLR 1 432 0 296 266 133 27 chrX 24561982 24562170 -138037760 + MLT1K LTR MaLR 381 588 0 237 83 0 0 chrX 24563396 24563432 -138036498 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 65 0 0 chrX 24563474 24563520 -138036410 + AT_rich Low_complexity Low_complexity 1 46 0 2235 111 0 0 chrX 24563576 24563874 -138036056 + AluSx SINE Alu 3 300 -12 236 300 0 11 chrX 24563974 24564064 -138035866 - L1MC4 LINE L1 -1339 6703 6615 * 250 259 111 0 chrX 24563996 24564077 -138035853 + L1MC4 LINE L1 6614 6703 -1339 746 265 10 25 chrX 24564085 24564281 -138035649 - MIR SINE MIR -30 232 40 334 218 165 68 chrX 24564433 24564566 -138035364 + MIR SINE MIR 3 148 -114 257 318 0 71 chrX 24566204 24566330 -138033600 + ERVL LTR ERVL 1503 1619 -4035 183 204 0 0 chrX 24566743 24566792 -138033138 + (TATG)n Simple_repeat Simple_repeat 4 52 0 307 353 25 14 chrX 24566887 24567198 -138032732 + ERVL LTR ERVL 2311 2607 -2389 308 292 62 56 chrX 24567564 24567759 -138032171 - L2 LINE L2 0 3313 3118 267 356 139 9 chrX 24567884 24568114 -138031816 - L2 LINE L2 -348 2966 2707 342 209 48 29 chrX 24568114 24568219 -138031711 + ERVL LTR ERVL 2435 2541 -3223 521 385 65 44 chrX 24568255 24568616 -138031314 - L2 LINE L2 -652 2662 2279 3112 152 30 23 chrX 24568616 24569215 -138030715 + L1MB3 LINE L1 5579 6181 -2 521 385 65 44 chrX 24569215 24569530 -138030400 - L2 LINE L2 -1035 2279 1972 1100 366 57 17 chrX 24569603 24570311 -138029619 - ERVL LTR ERVL -1779 3706 3002 21 0 0 0 chrX 24570832 24570853 -138029077 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chrX 24571553 24571583 -138028347 + (CA)n Simple_repeat Simple_repeat 2 31 0 183 322 102 0 chrX 24572099 24572158 -138027772 + MIR3 SINE MIR 108 172 -36 22 0 0 0 chrX 24572206 24572228 -138027702 + AT_rich Low_complexity Low_complexity 1 22 0 1729 194 0 3 chrX 24572303 24572613 -138027317 - AluJo SINE Alu -3 309 1 303 263 52 113 chrX 24574031 24574244 -138025686 + LTR16A1 LTR ERVL 145 344 -113 5666 151 16 15 chrX 24575481 24576830 -138023100 + L1MA4 LINE L1 4828 6180 -120 2171 148 15 0 chrX 24576830 24577162 -138022768 - MER1B DNA MER1_type 0 337 1 5666 151 16 15 chrX 24577162 24577283 -138022647 + L1MA4 LINE L1 6180 6299 -1 1369 179 107 0 chrX 24577635 24577898 -138022032 + AluJo SINE Alu 1 291 -21 252 340 65 20 chrX 24578305 24578458 -138021472 - MIR3 SINE MIR -11 197 38 217 324 15 0 chrX 24578973 24579041 -138020889 - MIR SINE MIR -98 164 96 356 331 37 55 chrX 24579148 24579289 -138020641 + L1MC4a LINE L1 5560 5702 -2106 267 31 0 0 chrX 24579289 24579321 -138020609 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 2147 87 3 7 chrX 24579321 24579608 -138020322 - AluSx SINE Alu -26 286 1 356 331 37 55 chrX 24579608 24579737 -138020193 + L1MC4a LINE L1 5700 5826 -1982 489 228 98 62 chrX 24579773 24579966 -138019964 - L2 LINE L2 0 3313 3114 21 0 0 0 chrX 24580263 24580284 -138019646 + AT_rich Low_complexity Low_complexity 1 21 0 197 346 75 23 chrX 24580704 24580837 -138019093 + L2 LINE L2 2765 2904 -410 291 350 79 17 chrX 24581694 24581871 -138018059 - MIR SINE MIR -56 206 19 955 225 14 14 chrX 24582788 24583006 -138016924 + MER20 DNA MER1_type 2 219 0 21 36 0 0 chrX 24583611 24583639 -138016291 + AT_rich Low_complexity Low_complexity 1 28 0 5072 114 16 1 chrX 24583684 24584430 -138015500 + L1PA16 LINE L1 5401 6157 -9 22 0 0 0 chrX 24584430 24584452 -138015478 + AT_rich Low_complexity Low_complexity 1 22 0 228 234 86 132 chrX 24585107 24585304 -138014626 + MIR3 SINE MIR 16 203 -5 433 310 32 7 chrX 24585506 24585661 -138014269 + MIR SINE MIR 7 165 -97 1911 130 0 18 chrX 24585976 24586261 -138013669 + AluSx SINE Alu 1 280 -32 972 77 26 7 chrX 24586263 24586418 -138013512 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 192 145 32 32 chrX 24587891 24587953 -138011977 + GA-rich Low_complexity Low_complexity 2 63 0 25 31 0 0 chrX 24588061 24588093 -138011837 + AT_rich Low_complexity Low_complexity 1 32 0 196 250 0 88 chrX 24588883 24588951 -138010979 - MIR SINE MIR -6 256 195 729 339 96 18 chrX 24589022 24589703 -138010227 - L2 LINE L2 -5 3308 2556 1428 179 7 29 chrX 24589811 24590084 -138009846 + AluJo SINE Alu 1 267 -45 180 0 0 0 chrX 24590092 24590112 -138009818 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 8501 219 40 39 chrX 24591374 24594113 -138005817 + L1M4 LINE L1 2563 5305 -841 426 169 0 1 chrX 24594151 24594239 -138005691 - L1P5 LINE L1 -383 5768 5682 241 349 0 0 chrX 24594239 24594302 -138005628 + (CA)n Simple_repeat Simple_repeat 1 63 0 230 316 0 0 chrX 24594306 24594385 -138005545 + L1MC4 LINE L1 6622 6700 -1342 * 2005 214 44 8 chrX 24594367 24594848 -138005082 + L1MA9 LINE L1 5777 6274 -38 4059 172 9 31 chrX 24594878 24596503 -138003427 - L1PA13 LINE L1 -5 6158 4530 5123 138 21 7 chrX 24596514 24597370 -138002560 + L1MB8 LINE L1 5311 6178 0 283 198 73 31 chrX 24648079 24648175 -137951755 - HAL1 LINE L1 -467 2040 1941 732 263 93 48 chrX 24648203 24648720 -137951210 - HAL1 LINE L1 -1048 1459 920 378 331 12 45 chrX 24648796 24649038 -137950892 + L2 LINE L2 3080 3313 0 422 299 140 62 chrX 24649393 24649858 -137950072 - MLT1J LTR MaLR 0 511 11 1734 127 0 0 chrX 24649918 24650155 -137949775 + AluSx SINE Alu 63 299 -13 442 382 65 10 chrX 24650179 24650564 -137949366 - L3 LINE CR1 -504 1073 668 196 250 0 88 chrX 24651886 24651954 -137947976 - MIR SINE MIR -6 256 195 729 339 96 18 chrX 24652025 24652706 -137947224 - L2 LINE L2 -5 3308 2556 1428 179 7 29 chrX 24652814 24653087 -137946843 + AluJo SINE Alu 1 267 -45 180 0 0 0 chrX 24653095 24653115 -137946815 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 8090 207 37 50 chrX 24654376 24657115 -137942815 + L1MB8 LINE L1 2563 5305 -841 426 140 0 0 chrX 24657153 24657241 -137942689 - L1P5 LINE L1 -383 5768 5682 280 280 32 0 chrX 24657241 24657366 -137942564 + (CATATA)n Simple_repeat Simple_repeat 1 129 0 1974 214 44 8 chrX 24657369 24657850 -137942080 + L1MA9 LINE L1 5777 6274 -38 4059 172 9 31 chrX 24657880 24659505 -137940425 - L1PA13 LINE L1 -5 6158 4530 5093 138 21 7 chrX 24659516 24660372 -137939558 + L1MB8 LINE L1 5311 6178 0 2469 118 41 3 chrX 24661077 24661467 -137938463 - L1PA16 LINE L1 -10 6156 5752 451 163 116 12 chrX 24661469 24661555 -137938375 + 5S rRNA rRNA 2 96 -25 2258 80 13 13 chrX 24661984 24662286 -137937644 - AluSp SINE Alu -11 302 1 466 233 142 51 chrX 24662574 24662750 -137937180 - MLT1E2 LTR MaLR -371 255 64 1366 241 128 28 chrX 24662869 24663624 -137936306 - L1M4 LINE L1 -933 5213 4383 1400 236 23 19 chrX 24663639 24664067 -137935863 - L1M4 LINE L1 -1821 4325 3896 259 0 0 0 chrX 24664071 24664106 -137935824 + L1MA3 LINE L1 6271 6305 0 242 255 21 57 chrX 24664138 24664279 -137935651 - L1M4 LINE L1 -2255 3891 3756 682 183 15 0 chrX 24664303 24664434 -137935496 - L1MA9 LINE L1 -384 5928 5796 381 43 0 0 chrX 24664444 24664491 -137935439 + (TG)n Simple_repeat Simple_repeat 2 48 0 469 196 80 0 chrX 24664562 24664674 -137935256 + L1MA9 LINE L1 6154 6274 -38 1483 261 45 4 chrX 24664717 24665223 -137934707 - L1M4 LINE L1 -2433 3713 3187 514 298 72 52 chrX 24665261 24665566 -137934364 - L1ME LINE L1 -5350 720 410 379 316 72 34 chrX 24665645 24665908 -137934022 - L1ME LINE L1 -5792 278 6 1322 303 99 36 chrX 24666028 24666727 -137933203 - L2 LINE L2 -952 2362 1620 314 190 0 0 chrX 24666732 24666790 -137933140 - MER58A DNA MER1_type -5 219 162 521 232 27 0 chrX 24666809 24666921 -137933009 - MER58A DNA MER1_type 0 115 1 472 350 42 21 chrX 24666927 24667167 -137932763 - L2 LINE L2 -1694 1620 1376 30 0 0 0 chrX 24667961 24667991 -137931939 + AT_rich Low_complexity Low_complexity 1 30 0 2225 44 91 0 chrX 24668176 24668451 -137931479 + AluY SINE Alu 1 300 -11 549 249 224 10 chrX 24668516 24668721 -137931209 + MIR SINE MIR 1 249 -13 6533 83 32 0 chrX 24669799 24670826 -137929104 - L1PA10 LINE L1 -10 6158 5118 2404 241 98 4 chrX 24671098 24671518 -137928412 - L1ME1 LINE L1 -9 6157 5778 1480 229 5 111 chrX 24671518 24672095 -137927835 + MLT2B1 LTR ERVL 5 520 0 2404 241 98 4 chrX 24672095 24672399 -137927531 - L1ME1 LINE L1 -388 5778 5365 2101 261 63 54 chrX 24672474 24672513 -137927417 - L1ME1 LINE L1 -790 5356 5319 2094 119 17 0 chrX 24672513 24672807 -137927123 - AluSx SINE Alu -11 301 3 2101 261 63 54 chrX 24672807 24673441 -137926489 - L1ME1 LINE L1 -827 5319 4665 2577 34 0 0 chrX 24673441 24673738 -137926192 - AluYb8 SINE Alu -21 297 1 2101 261 63 54 chrX 24673738 24674307 -137925623 - L1ME1 LINE L1 -1481 4665 4102 372 318 84 43 chrX 24674717 24675158 -137924772 + L1MC4a LINE L1 3247 3705 -2441 1358 206 41 46 chrX 24675344 24675712 -137924218 - MER47A DNA MER2_type 0 366 1 604 314 126 19 chrX 24675785 24676260 -137923670 + L1MC4a LINE L1 4067 4592 -1554 1436 271 62 25 chrX 24676421 24677067 -137922863 + L1MC4a LINE L1 5265 5934 -1874 22 35 0 0 chrX 24678141 24678170 -137921760 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chrX 24678594 24678660 -137921270 + AT_rich Low_complexity Low_complexity 1 66 0 27 0 0 0 chrX 24678784 24678811 -137921119 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chrX 24678898 24678947 -137920983 + AT_rich Low_complexity Low_complexity 1 49 0 272 227 171 0 chrX 24679401 24679489 -137920441 - MIR SINE MIR -5 257 155 1844 273 85 15 chrX 24679539 24680341 -137919589 - L1ME3 LINE L1 -39 6123 5266 307 272 160 16 chrX 24680370 24680495 -137919435 - L1ME3 LINE L1 -955 5191 5049 873 214 92 80 chrX 24680527 24681050 -137918880 - L1ME3 LINE L1 -1296 4850 4322 234 0 0 0 chrX 24681382 24681408 -137918522 + (TTG)n Simple_repeat Simple_repeat 2 27 0 612 313 132 57 chrX 24681538 24682055 -137917875 + L2 LINE L2 2755 3309 -4 658 248 4 62 chrX 24682309 24682535 -137917395 - L1ME1 LINE L1 -7 6159 5947 1910 192 11 3 chrX 24682545 24682905 -137917025 - MLT1A1 LTR MaLR -2 363 1 200 188 0 0 chrX 24683319 24683351 -137916579 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 808 94 39 0 chrX 24683352 24683479 -137916451 - L1MB1 LINE L1 -4 6164 6033 2100 97 3 10 chrX 24683486 24683775 -137916155 - AluSq SINE Alu -15 298 12 21 0 0 0 chrX 24683866 24683887 -137916043 + AT_rich Low_complexity Low_complexity 1 21 0 1130 218 102 72 chrX 24684102 24684171 -137915759 - MLT1A2 LTR MaLR 0 374 309 1693 106 50 90 chrX 24684171 24684492 -137915438 + AluSx SINE Alu 1 308 -4 1130 218 102 72 chrX 24684492 24684785 -137915145 - MLT1A2 LTR MaLR -65 309 1 433 261 8 157 chrX 24684795 24685063 -137914867 - MIR SINE MIR 0 262 35 3307 196 35 78 chrX 24685084 24685546 -137914384 - L1MA6 LINE L1 -25 6275 5794 291 54 0 0 chrX 24685546 24685583 -137914347 + (TG)n Simple_repeat Simple_repeat 2 38 0 3307 196 35 78 chrX 24685583 24685935 -137913995 - L1MA6 LINE L1 -506 5794 5428 2269 84 3 0 chrX 24685935 24686222 -137913708 - AluY SINE Alu -23 288 1 3307 196 35 78 chrX 24686222 24686955 -137912975 - L1MA6 LINE L1 -872 5428 4793 1823 195 3 8 chrX 24686954 24687329 -137912601 + L1 LINE L1 3844 4216 -1930 * 22 56 0 0 chrX 24688951 24688987 -137910943 + AT_rich Low_complexity Low_complexity 1 36 0 246 324 65 14 chrX 24689440 24689579 -137910351 - L2 LINE L2 -1 3312 3167 2490 181 31 2 chrX 24689806 24690314 -137909616 + Charlie1b DNA MER1_type 1 523 0 247 361 0 0 chrX 24690960 24691021 -137908909 + L2 LINE L2 3118 3178 -94 3162 306 95 19 chrX 24691448 24692888 -137907042 + L2 LINE L2 927 2476 -838 272 339 77 5 chrX 24693087 24693282 -137906648 + LTR33 LTR ERVL 307 515 -6 1165 308 53 35 chrX 24693285 24694101 -137905829 + L2 LINE L2 2481 3313 0 331 130 19 0 chrX 24694320 24694374 -137905556 + MSTB LTR MaLR 1 55 -377 24 32 0 0 chrX 24695034 24695065 -137904865 + AT_rich Low_complexity Low_complexity 1 31 0 2233 107 0 3 chrX 24695352 24695662 -137904268 + AluSx SINE Alu 1 309 -3 896 179 0 37 chrX 24696140 24696326 -137903604 - AluJb SINE Alu 0 308 129 2049 128 10 0 chrX 24696463 24696761 -137903169 - AluSx SINE Alu -11 301 1 2024 130 3 3 chrX 24696765 24697099 -137902831 - AluSx SINE Alu 0 334 1 21 0 0 0 chrX 24697636 24697657 -137902273 + AT_rich Low_complexity Low_complexity 1 21 0 1873 188 38 5 chrX 24697701 24698069 -137901861 + MSTB LTR MaLR 47 426 0 422 238 155 33 chrX 24698469 24698650 -137901280 - L1ME3A LINE L1 -289 5881 5679 770 174 22 16 chrX 24699199 24699383 -137900547 + MER53 DNA DNA 5 189 0 603 168 0 0 chrX 24700283 24700402 -137899528 + GA-rich Low_complexity Low_complexity 2 120 0 265 275 0 12 chrX 24701995 24702075 -137897855 + CT-rich Low_complexity Low_complexity 2 80 0 21 36 0 0 chrX 24702984 24703012 -137896918 + AT_rich Low_complexity Low_complexity 1 28 0 1551 241 94 74 chrX 24703566 24704214 -137895716 + MLT2F LTR ERVL 3 663 0 462 36 0 0 chrX 24704319 24704375 -137895555 + (CA)n Simple_repeat Simple_repeat 2 57 0 2196 95 0 22 chrX 24704724 24705041 -137894889 + AluSg SINE Alu 1 310 0 246 116 0 0 chrX 24705276 24705319 -137894611 + (TC)n Simple_repeat Simple_repeat 1 43 0 1254 148 18 26 chrX 24705338 24705567 -137894363 + Tigger1 DNA MER2_type 2 228 -2190 1230 164 80 27 chrX 24705567 24705830 -137894100 - AluJo SINE Alu -15 297 21 4517 131 22 8 chrX 24705834 24706552 -137893378 + Tigger1 DNA MER2_type 215 942 -1476 2124 173 29 26 chrX 24706552 24706973 -137892957 - MSTB LTR MaLR 0 426 5 1943 174 24 29 chrX 24706596 24706975 -137892955 - MSTB LTR MaLR -47 379 3 8715 184 35 8 chrX 24706977 24708584 -137891346 - MSTB-int LTR MaLR 0 1651 1 324 70 0 0 chrX 24708588 24708631 -137891299 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1787 109 39 0 chrX 24708632 24708889 -137891041 - AluSg SINE Alu -39 271 5 2454 159 19 7 chrX 24708903 24709324 -137890606 - MSTB LTR MaLR 0 426 1 8922 144 10 8 chrX 24709328 24710798 -137889132 + Tigger1 DNA MER2_type 942 2415 -3 180 300 60 0 chrX 24711376 24711426 -137888504 + MIR3 SINE MIR 104 156 -52 41676 58 4 7 chrX 24711652 24717853 -137882077 + L1PA5 LINE L1 12 6194 0 1843 234 22 33 chrX 24718318 24718869 -137881061 + L1MC3 LINE L1 6031 6575 -1210 1485 171 9 73 chrX 24718869 24719197 -137880733 - LTR1 LTR ERV1 0 785 479 403 92 59 8 chrX 24719197 24719316 -137880614 + (TA)n Simple_repeat Simple_repeat 2 126 0 3693 211 109 73 chrX 24719362 24719869 -137880061 + L1MC3 LINE L1 6571 7058 -727 393 203 0 25 chrX 24719869 24719948 -137879982 + MLT1F1 LTR MaLR 35 111 -456 3693 211 109 73 chrX 24719948 24720513 -137879417 + L1MC3 LINE L1 7058 7763 -22 650 326 120 22 chrX 24720995 24721547 -137878383 - L2 LINE L2 -1437 1877 1272 1898 136 0 26 chrX 24721601 24721911 -137878019 + AluJo SINE Alu 1 302 -10 280 332 32 28 chrX 24722625 24722875 -137877055 - L1M4 LINE L1 -1857 4289 4039 544 302 54 61 chrX 24722880 24723304 -137876626 - L1M4 LINE L1 -2846 3300 2880 1829 231 72 48 chrX 24723532 24724057 -137875873 - MLT1F1 LTR MaLR -4 563 1 547 266 79 23 chrX 24724439 24724616 -137875314 + MLT1J2 LTR MaLR 1 187 -263 22 0 0 0 chrX 24725691 24725713 -137874217 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chrX 24727342 24727367 -137872563 + (GA)n Simple_repeat Simple_repeat 2 26 0 336 308 14 14 chrX 24727775 24727918 -137872012 - MLT1J LTR MaLR -45 466 324 280 368 7 35 chrX 24728201 24728345 -137871585 - L2 LINE L2 -1307 2007 1868 22 56 0 0 chrX 24728397 24728433 -137871497 + AT_rich Low_complexity Low_complexity 1 36 0 236 213 27 120 chrX 24728457 24728607 -137871323 + L1MB8 LINE L1 6035 6170 -8 329 235 20 31 chrX 24728948 24729046 -137870884 - MER69 DNA AcHobo 0 2526 2430 288 0 0 0 chrX 24729052 24729084 -137870846 + (TG)n Simple_repeat Simple_repeat 2 33 0 330 203 0 0 chrX 24729224 24729283 -137870647 - MER69 DNA AcHobo -2467 59 1 530 304 129 38 chrX 24730295 24730774 -137869156 - L2 LINE L2 -2 3311 2738 28 0 0 0 chrX 24730941 24730969 -137868961 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chrX 24731108 24731153 -137868777 + AT_rich Low_complexity Low_complexity 1 45 0 264 247 53 105 chrX 24731173 24731363 -137868567 - HsTC2 DNA Tc2 -1625 273 94 27 49 0 0 chrX 24732236 24732277 -137867653 + AT_rich Low_complexity Low_complexity 1 41 0 698 193 167 66 chrX 24732819 24733047 -137866883 + MIR SINE MIR 11 261 -1 180 0 0 0 chrX 24734722 24734742 -137865188 + (T)n Simple_repeat Simple_repeat 1 20 0 230 321 53 34 chrX 24734760 24735022 -137864908 - L1ME LINE L1 -343 5778 5512 249 242 66 11 chrX 24735315 24735406 -137864524 + L1MA9 LINE L1 6217 6312 0 21 57 0 0 chrX 24735591 24735626 -137864304 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 24736021 24736049 -137863881 + AT_rich Low_complexity Low_complexity 1 28 0 364 298 101 41 chrX 24736786 24737152 -137862778 - HAL1 LINE L1 -855 1652 1265 420 276 32 94 chrX 24737186 24737559 -137862371 - HAL1 LINE L1 -1345 1162 813 557 298 97 71 chrX 24738357 24738750 -137861180 - L1ME LINE L1 -1410 4736 4355 2132 77 37 27 chrX 24738750 24739049 -137860881 - AluSx SINE Alu -10 302 1 557 298 97 71 chrX 24739049 24739457 -137860473 - L1ME LINE L1 -1791 4355 3914 22 0 0 0 chrX 24739466 24739488 -137860442 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 24739596 24739619 -137860311 + AT_rich Low_complexity Low_complexity 1 23 0 698 287 74 46 chrX 24739779 24740211 -137859719 + LTR33A LTR ERVL 80 523 0 21 0 0 0 chrX 24741515 24741536 -137858394 + AT_rich Low_complexity Low_complexity 1 21 0 637 293 103 48 chrX 24742727 24743754 -137856176 + L1ME3A LINE L1 573 1648 -4567 336 267 70 32 chrX 24743867 24744054 -137855876 + L1ME3A LINE L1 2024 2217 -4179 1555 251 64 108 chrX 24744141 24744466 -137855464 + L1ME3A LINE L1 2279 2617 -3598 2087 106 3 0 chrX 24744466 24744781 -137855149 + AluSx SINE Alu 2 317 0 1555 251 64 108 chrX 24744781 24745330 -137854600 + L1ME3A LINE L1 2617 3189 -3026 2329 97 0 3 chrX 24745330 24745640 -137854290 + AluSg SINE Alu 1 309 -1 1555 251 64 108 chrX 24745640 24746800 -137853130 + L1ME3A LINE L1 3189 4225 -1990 899 299 42 3 chrX 24746886 24747241 -137852689 + L1ME3A LINE L1 4809 5177 -1038 370 285 0 9 chrX 24747307 24747465 -137852465 + L1ME3A LINE L1 5303 5457 -758 255 294 34 34 chrX 24747483 24747602 -137852328 + L1ME3A LINE L1 5984 6102 -137 632 177 0 32 chrX 24747666 24747790 -137852140 + L1ME3A LINE L1 6114 6233 -6 697 176 15 0 chrX 24748032 24748163 -137851767 + FLAM_A SINE Alu 1 133 0 1328 99 0 0 chrX 24748164 24748335 -137851595 + AluSg/x SINE Alu 115 285 -27 42 36 0 0 chrX 24748335 24748391 -137851539 + AT_rich Low_complexity Low_complexity 1 56 0 28 48 0 0 chrX 24748419 24748461 -137851469 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chrX 24748559 24748587 -137851343 + AT_rich Low_complexity Low_complexity 1 28 0 224 297 95 14 chrX 24750054 24750128 -137849802 - L2 LINE L2 -4 3268 3189 32 0 0 0 chrX 24750375 24750407 -137849523 + AT_rich Low_complexity Low_complexity 1 32 0 1649 106 0 0 chrX 24750412 24750629 -137849301 - AluSg/x SINE Alu -22 290 74 26 0 0 0 chrX 24751880 24751906 -137848024 + AT_rich Low_complexity Low_complexity 1 26 0 2582 44 0 0 chrX 24752143 24752462 -137847468 + L1PA4 LINE L1 5834 6152 -3 1063 172 19 184 chrX 24752584 24752996 -137846934 + LTR40b LTR ERVL 119 462 0 1268 173 0 30 chrX 24753363 24753594 -137846336 + AluJo SINE Alu 13 236 -76 1195 80 0 0 chrX 24753607 24753757 -137846173 - AluSg1 SINE Alu -159 150 1 2715 54 92 0 chrX 24754104 24754473 -137845457 + L1P LINE L1 2 404 -5742 4809 41 0 0 chrX 24754473 24755054 -137844876 + L1PA4 LINE L1 5573 6153 -2 274 235 41 100 chrX 24755258 24755428 -137844502 - L1ME2 LINE L1 -77 6087 5928 3028 235 63 11 chrX 24755462 24756587 -137843343 - L1ME1 LINE L1 -46 6120 4898 188 86 29 0 chrX 24756587 24756622 -137843308 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 3028 235 63 11 chrX 24756622 24757016 -137842914 - L1ME1 LINE L1 -1268 4898 4526 578 242 204 8 chrX 24757000 24757260 -137842670 - L1ME1 LINE L1 -1956 4190 3880 * 573 329 90 46 chrX 24757292 24757772 -137842158 + LTR33A LTR ERVL 3 503 -20 374 263 125 13 chrX 24758100 24758332 -137841598 + L1M4 LINE L1 2966 3223 -2923 910 227 120 91 chrX 24758456 24759271 -137840659 + L1MC5 LINE L1 7090 7928 -33 207 88 0 0 chrX 24759554 24759588 -137840342 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chrX 24759791 24759812 -137840118 + (TTA)n Simple_repeat Simple_repeat 2 22 0 814 207 11 27 chrX 24759845 24760033 -137839897 - AluJo SINE Alu -89 223 39 4106 152 122 36 chrX 24762017 24762995 -137836935 + pTR5 LTR ERV1 741 2030 -408 366 220 11 0 chrX 24762997 24763088 -137836842 + LTR30 LTR ERV1 551 642 -80 1366 94 70 9 chrX 24763091 24763304 -137836626 + pTR5 LTR ERV1 172 397 -2041 195 287 23 58 chrX 24766304 24766391 -137833539 - L2 LINE L2 -2 3270 3187 1004 142 0 0 chrX 24766959 24767107 -137832823 - L1PA8A LINE L1 -18 6113 5966 2080 246 22 30 chrX 24768582 24769213 -137830717 - MLT1E2 LTR MaLR 0 626 1 332 324 108 39 chrX 24769761 24770067 -137829863 + MLT1I LTR MaLR 34 360 -49 26 0 0 0 chrX 24770132 24770158 -137829772 + AT_rich Low_complexity Low_complexity 1 26 0 932 196 0 0 chrX 24770405 24770563 -137829367 - FRAM SINE Alu -7 159 2 2480 91 0 0 chrX 24775598 24775905 -137824025 + AluY SINE Alu 1 307 -4 183 293 0 0 chrX 24776052 24776110 -137823820 - L2 LINE L2 -1 3271 3214 1673 169 30 10 chrX 24776341 24776636 -137823294 - AluJb SINE Alu -5 307 7 1343 225 85 13 chrX 24776974 24777290 -137822640 - MSTD LTR MaLR 0 396 58 1829 252 44 54 chrX 24778803 24779433 -137820497 - MLT1E2 LTR MaLR 0 626 3 332 296 107 12 chrX 24779925 24780101 -137819829 + MLT1I LTR MaLR 1 200 -209 347 283 92 13 chrX 24780141 24780293 -137819637 + MLT1J2 LTR MaLR 270 433 -17 374 313 18 24 chrX 24780566 24780814 -137819116 - L1MC4a LINE L1 -376 5786 5665 2142 104 34 0 chrX 24782248 24782545 -137817385 + AluSx SINE Alu 1 307 -5 1374 182 103 30 chrX 24786763 24787093 -137812837 - MLT1A1 LTR MaLR -11 354 1 239 311 44 59 chrX 24788136 24788271 -137811659 - MIR3 SINE MIR -66 142 10 1624 254 53 54 chrX 24789131 24789631 -137810299 - MLT1E2 LTR MaLR 0 626 126 3772 69 6 48 chrX 24789631 24790169 -137809761 + L1PA13 LINE L1 5649 6163 0 1624 254 53 54 chrX 24790169 24790293 -137809637 - MLT1E2 LTR MaLR -500 126 3 2347 103 7 0 chrX 24790635 24790945 -137808985 + AluSx SINE Alu 1 312 0 251 152 65 0 chrX 24791236 24791282 -137808648 + MER61E LTR ERV1 518 566 -3 250 331 103 7 chrX 24791282 24791407 -137808523 + MLT1J2 LTR MaLR 279 416 -34 23 0 0 0 chrX 24791617 24791640 -137808290 + AT_rich Low_complexity Low_complexity 1 23 0 508 318 46 38 chrX 24791706 24792206 -137807724 - L1MC4a LINE L1 -1902 5906 5403 244 150 25 0 chrX 24792221 24792261 -137807669 + Charlie3 DNA MER1_type 2355 2395 -315 351 222 101 0 chrX 24794440 24794539 -137805391 - L1MC3 LINE L1 0 8203 8095 * 801 196 27 11 chrX 24794536 24794594 -137805336 - L1MC3 LINE L1 -669 7534 7478 2334 90 0 0 chrX 24794594 24794882 -137805048 + AluSc SINE Alu 3 290 -19 801 196 27 11 chrX 24794882 24795007 -137804923 - L1MC3 LINE L1 -725 7478 7348 * 4711 210 108 6 chrX 24795004 24796260 -137803670 - L1MC3 LINE L1 -1083 7120 5738 1315 241 62 42 chrX 24796274 24796727 -137803203 - MLT1C LTR MaLR 0 467 6 8443 242 63 20 chrX 24796732 24799644 -137800286 - L1MC3 LINE L1 -835 5729 2690 2348 66 0 17 chrX 24799809 24800136 -137799794 - AluY SINE Alu 0 322 1 1677 139 35 19 chrX 24800954 24801270 -137798660 - L1MC2 LINE L1 -1 6343 6023 2998 246 106 32 chrX 24801273 24801433 -137798497 - L1MC3 LINE L1 -4005 2740 2593 2024 134 0 0 chrX 24801433 24801710 -137798220 - AluJb SINE Alu -35 277 1 2998 246 106 32 chrX 24801710 24803491 -137796439 - L1MC3 LINE L1 -4152 2593 571 1466 271 44 56 chrX 24803597 24804165 -137795765 - L1MC3 LINE L1 -5482 563 3 643 264 15 0 chrX 24804187 24804384 -137795546 - L1MD3 LINE L1 -8 7987 7788 455 322 101 33 chrX 24804449 24805158 -137794772 + L1 LINE L1 3663 4433 -1713 1611 166 42 89 chrX 24805290 24805693 -137794237 + MLT1B LTR MaLR 2 385 -5 391 339 81 21 chrX 24809245 24809481 -137790449 - MIR SINE MIR 0 262 13 4778 83 52 0 chrX 24809946 24810598 -137789332 - LTR12 LTR ERV1 -2 686 1 403 311 65 53 chrX 24811354 24811866 -137788064 - L1MC4a LINE L1 -358 5804 5389 555 220 20 7 chrX 24812861 24813011 -137786919 - L1MC4a LINE L1 -1487 6321 6170 2630 132 16 27 chrX 24814321 24814760 -137785170 + Tigger2a DNA MER2_type 1 434 0 2886 188 11 40 chrX 24814880 24815534 -137784396 - L1MA8 LINE L1 -849 5297 4663 5644 144 20 5 chrX 24815537 24816503 -137783427 + L1MA8 LINE L1 5308 6287 -4 252 0 0 0 chrX 24817523 24817551 -137782379 + (A)n Simple_repeat Simple_repeat 1 28 0 1344 93 44 0 chrX 24818736 24818961 -137780969 + L1MA7 LINE L1 6057 6291 0 2216 110 0 13 chrX 24818963 24819264 -137780666 + AluSx SINE Alu 1 297 -15 213 39 0 0 chrX 24819294 24819320 -137780610 + (CA)n Simple_repeat Simple_repeat 2 27 0 243 356 31 25 chrX 24819692 24819852 -137780078 - MLT1L LTR MaLR -454 161 1 363 231 87 104 chrX 24820382 24820555 -137779375 + LTR33A LTR ERVL 4 173 -350 791 267 71 8 chrX 24820620 24820860 -137779070 + LTR33A LTR ERVL 269 523 0 251 345 184 18 chrX 24820911 24821253 -137778677 + L2 LINE L2 1852 2250 -1064 1773 209 36 28 chrX 24821493 24821974 -137777956 + MLT1F1 LTR MaLR 37 556 -11 416 390 62 31 chrX 24821974 24822361 -137777569 + L2 LINE L2 2467 2865 -449 264 368 45 15 chrX 24822436 24822569 -137777361 + L2 LINE L2 2947 3083 -189 387 0 0 0 chrX 24822796 24822839 -137777091 + (TA)n Simple_repeat Simple_repeat 1 43 0 2310 92 0 7 chrX 24823081 24823387 -137776543 - AluSp SINE Alu -8 305 2 1399 194 20 43 chrX 24823482 24823827 -137776103 - L1MA9 LINE L1 -40 6272 5936 1450 179 28 92 chrX 24824398 24824788 -137775142 - MLT1A1 LTR MaLR 0 365 1 29 60 0 0 chrX 24825331 24825381 -137774549 + AT_rich Low_complexity Low_complexity 1 50 0 633 278 19 42 chrX 24825699 24825962 -137773968 - MIR SINE MIR -4 258 2 4264 156 101 37 chrX 24825963 24826141 -137773789 - L1MD1 LINE L1 0 6242 6077 2130 79 0 0 chrX 24826141 24826406 -137773524 + AluSg SINE Alu 36 300 -10 4264 156 101 37 chrX 24826406 24827250 -137772680 - L1MD1 LINE L1 -165 6077 5133 1025 70 0 0 chrX 24827287 24827415 -137772515 - AluY SINE Alu -12 299 172 1421 60 0 0 chrX 24827579 24827745 -137772185 - AluY SINE Alu -137 174 9 265 239 128 37 chrX 24827745 24827933 -137771997 - L1MDa LINE L1 -4328 2212 2008 703 129 0 17 chrX 24827934 24828050 -137771880 - AluSg/x SINE Alu -8 304 191 2167 107 3 17 chrX 24828276 24828575 -137771355 + AluSq SINE Alu 1 295 -18 2124 108 14 0 chrX 24828700 24828986 -137770944 + AluSg SINE Alu 1 290 -20 32 0 0 0 chrX 24828990 24829022 -137770908 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chrX 24829065 24829091 -137770839 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1837 213 40 51 chrX 24829554 24830160 -137769770 - L1MDa LINE L1 -4532 2008 1410 365 310 92 115 chrX 24830262 24830749 -137769181 - L1MDa LINE L1 -5586 954 479 1298 274 41 33 chrX 24830860 24831345 -137768585 - L1MDa LINE L1 -6017 523 35 401 251 140 39 chrX 24831484 24831860 -137768070 - L1ME LINE L1 -299 5822 5414 2228 89 7 3 chrX 24832160 24832453 -137767477 - AluSx SINE Alu -18 294 1 189 175 0 0 chrX 24832798 24832838 -137767092 + CT-rich Low_complexity Low_complexity 2 41 0 21 36 0 0 chrX 24833779 24833807 -137766123 + AT_rich Low_complexity Low_complexity 1 28 0 1465 191 8 109 chrX 24834012 24834388 -137765542 - MLT1A1 LTR MaLR -25 340 3 252 333 65 0 chrX 24835473 24835581 -137764349 - MIR SINE MIR -128 134 20 807 189 25 61 chrX 24836193 24836389 -137763541 + MER20 DNA MER1_type 31 219 0 708 176 93 78 chrX 24836509 24836550 -137763380 - MER3 DNA MER1_type -1 208 169 2238 95 0 0 chrX 24836550 24836868 -137763062 - AluSp SINE Alu 0 318 1 708 176 93 78 chrX 24836868 24837029 -137762901 - MER3 DNA MER1_type -40 169 2 2207 176 95 6 chrX 24837601 24838073 -137761857 - MER67D LTR ERV1 0 514 1 2843 133 123 34 chrX 24838666 24839228 -137760702 + LTR9 LTR ERV1 1 612 0 24 0 0 0 chrX 24839252 24839276 -137760654 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrX 24840292 24840313 -137759617 + AT_rich Low_complexity Low_complexity 1 21 0 2185 116 0 0 chrX 24840590 24840893 -137759037 + AluSx SINE Alu 1 303 -9 4637 153 21 25 chrX 24841023 24841844 -137758086 - L1PA16 LINE L1 -24 6142 5323 1859 73 61 4 chrX 24841844 24842089 -137757841 - AluY SINE Alu -14 297 39 4637 153 21 25 chrX 24842089 24842153 -137757777 - L1PA16 LINE L1 -843 5323 5260 26 0 0 0 chrX 24842258 24842284 -137757646 + AT_rich Low_complexity Low_complexity 1 26 0 1173 224 0 0 chrX 24842568 24842791 -137757139 + MER58A DNA MER1_type 1 223 -1 285 103 26 39 chrX 24843510 24843588 -137756342 + T-rich Low_complexity Low_complexity 2 78 0 23 33 0 0 chrX 24843905 24843935 -137755995 + AT_rich Low_complexity Low_complexity 1 30 0 208 258 16 0 chrX 24844582 24844644 -137755286 + CT-rich Low_complexity Low_complexity 2 64 0 1312 173 23 11 chrX 24845427 24845693 -137754237 - L1 LINE L1 -1956 4190 3922 461 194 19 0 chrX 24845698 24845806 -137754124 + L1MA9 LINE L1 6203 6312 0 423 0 0 0 chrX 24846345 24846392 -137753538 + (TG)n Simple_repeat Simple_repeat 2 48 0 2269 109 0 0 chrX 24846419 24846722 -137753208 + AluSx SINE Alu 1 303 -9 255 288 0 14 chrX 24847009 24847089 -137752841 - MIR SINE MIR -67 141 71 967 212 4 56 chrX 24848185 24848416 -137751514 - MER20 DNA MER1_type 0 219 1 26 30 0 0 chrX 24848499 24848532 -137751398 + AT_rich Low_complexity Low_complexity 1 33 0 1419 154 158 0 chrX 24849357 24849668 -137750262 - MER46B DNA MER2_type 0 236 2 1590 130 8 82 chrX 24849711 24849999 -137749931 - L1MB2 LINE L1 -2 6169 5910 1785 157 82 3 chrX 24849999 24850318 -137749612 - MER2 DNA MER2_type 0 344 1 1590 130 8 82 chrX 24850318 24850382 -137749548 - L1MB2 LINE L1 -261 5910 5843 23 0 0 0 chrX 24850586 24850609 -137749321 + AT_rich Low_complexity Low_complexity 1 23 0 2197 64 0 0 chrX 24850725 24850991 -137748939 - AluY SINE Alu -7 304 39 4917 173 34 26 chrX 24851054 24852046 -137747884 + L1MA7 LINE L1 4528 5532 -759 2356 93 0 0 chrX 24852046 24852348 -137747582 - AluSc SINE Alu -7 302 1 4917 173 34 26 chrX 24852348 24853105 -137746825 + L1MA7 LINE L1 5532 6281 -10 31 58 0 0 chrX 24853120 24853172 -137746758 + AT_rich Low_complexity Low_complexity 1 52 0 299 212 53 68 chrX 24853463 24853652 -137746278 - L1ME LINE L1 -654 5512 5334 262 115 39 0 chrX 24853891 24853943 -137745987 + (TA)n Simple_repeat Simple_repeat 1 54 0 528 126 0 0 chrX 24854531 24854618 -137745312 + (TG)n Simple_repeat Simple_repeat 2 88 0 345 347 59 12 chrX 24855008 24855178 -137744752 + MER5B DNA MER1_type 1 178 0 334 237 51 103 chrX 24855365 24855521 -137744409 - MER5A DNA MER1_type -6 183 36 1608 182 27 2 chrX 24855826 24856239 -137743691 + L1M2 LINE L1 5025 5444 -743 2449 37 0 20 chrX 24856815 24857140 -137742790 - AluY SINE Alu 0 311 1 251 262 129 36 chrX 24857336 24857561 -137742369 - L1MC5 LINE L1 -436 7525 7280 462 239 18 9 chrX 24858565 24858674 -137741256 + MER5B DNA MER1_type 69 178 0 474 326 27 36 chrX 24858906 24859130 -137740800 + L2 LINE L2 3092 3313 0 963 262 17 8 chrX 24859186 24859423 -137740507 - MSTB1 LTR MaLR -1 431 193 510 166 31 161 chrX 24859509 24859702 -137740228 - MSTB2 LTR MaLR -1 456 289 280 325 40 40 chrX 24860806 24860932 -137738998 - MIR3 SINE MIR -73 135 10 22 70 0 0 chrX 24861589 24861632 -137738298 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chrX 24861835 24861866 -137738064 + AT_rich Low_complexity Low_complexity 1 31 0 1923 129 11 0 chrX 24862412 24862698 -137737232 - AluSx SINE Alu -10 302 14 1018 70 0 14 chrX 24862855 24862998 -137736932 + AluY SINE Alu 171 311 0 225 321 152 51 chrX 24863506 24863743 -137736187 + L2 LINE L2 2827 3087 -185 389 367 38 0 chrX 24864294 24864452 -137735478 - MIR3 SINE MIR -15 193 30 614 193 143 6 chrX 24864733 24864894 -137735036 + MER3 DNA MER1_type 5 187 -22 533 227 134 26 chrX 24865164 24865329 -137734601 - MER5A DNA MER1_type 0 189 4 207 194 0 0 chrX 24865568 24865604 -137734326 + (TATG)n Simple_repeat Simple_repeat 3 38 0 24 32 0 0 chrX 24865874 24865905 -137734025 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chrX 24867033 24867061 -137732869 + AT_rich Low_complexity Low_complexity 1 28 0 1093 267 36 22 chrX 24867157 24867639 -137732291 + MLT1H LTR MaLR 29 549 0 1006 280 109 37 chrX 24868029 24868486 -137731444 - LTR16C LTR ERVL -1 490 1 218 310 99 42 chrX 24869713 24869855 -137730075 + L2 LINE L2 3153 3302 -11 193 350 85 28 chrX 24870321 24870498 -137729432 + MIR3 SINE MIR 9 195 -13 26 30 0 0 chrX 24870834 24870867 -137729063 + AT_rich Low_complexity Low_complexity 1 33 0 912 267 202 20 chrX 24871915 24872516 -137727414 + L2 LINE L2 2603 3313 0 384 339 0 70 chrX 24872768 24872954 -137726976 + MIR SINE MIR 34 206 -56 3273 190 25 20 chrX 24872991 24873697 -137726233 + MER67C LTR ERV1 1 710 0 341 294 40 57 chrX 24873719 24873896 -137726034 + L1MCa LINE L1 19 694 -6247 3086 214 59 44 chrX 24874069 24875030 -137724900 + L1ME1 LINE L1 5174 6145 -21 24 53 0 0 chrX 24875031 24875069 -137724861 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chrX 24876102 24876135 -137723795 + AT_rich Low_complexity Low_complexity 1 33 0 409 342 6 37 chrX 24876606 24876767 -137723163 - L2 LINE L2 -5 3308 3153 342 333 63 39 chrX 24878906 24879113 -137720817 - L2 LINE L2 -1 3312 3101 971 287 101 17 chrX 24879287 24879642 -137720288 + LTR16C LTR ERVL 107 491 0 507 336 118 46 chrX 24879645 24880153 -137719777 - L2 LINE L2 -228 3085 2553 1258 326 92 73 chrX 24880173 24880646 -137719284 - L2 LINE L2 -1104 2210 1747 694 294 95 33 chrX 24880646 24881067 -137718863 + MLT1J2 LTR MaLR 3 449 -1 1258 326 92 73 chrX 24881067 24881367 -137718563 - L2 LINE L2 -1567 1747 1454 6708 21 0 0 chrX 24881367 24882142 -137717788 + L1PA2 LINE L1 5376 6150 -5 1258 326 92 73 chrX 24882142 24882754 -137717176 - L2 LINE L2 -1860 1454 799 1404 221 13 48 chrX 24883950 24884325 -137715605 - MLT1A1 LTR MaLR 0 365 4 24 32 0 0 chrX 24884874 24884905 -137715025 + AT_rich Low_complexity Low_complexity 1 31 0 2179 259 69 14 chrX 24885146 24885815 -137714115 - L1ME3 LINE L1 0 6162 5457 22 0 0 0 chrX 24885930 24885952 -137713978 + AT_rich Low_complexity Low_complexity 1 22 0 258 264 104 72 chrX 24889794 24889919 -137710011 + L2 LINE L2 3178 3306 -7 640 285 21 43 chrX 24890102 24890216 -137709714 + MIR SINE MIR 19 127 -135 2035 100 14 0 chrX 24890216 24890506 -137709424 - AluY SINE Alu -17 294 1 640 285 21 43 chrX 24890506 24890626 -137709304 + MIR SINE MIR 127 248 -14 312 280 47 9 chrX 24892162 24892269 -137707661 - MIR SINE MIR -30 232 122 747 201 18 0 chrX 24892273 24892437 -137707493 + MER53 DNA DNA 23 189 0 483 298 11 28 chrX 24893261 24893439 -137706491 - MER5A DNA MER1_type -13 176 2 181 319 14 28 chrX 24893595 24893667 -137706263 + MER5A DNA MER1_type 4 74 -115 26 50 0 0 chrX 24893894 24893934 -137705996 + AT_rich Low_complexity Low_complexity 1 40 0 2554 196 46 61 chrX 24894518 24894936 -137704994 - MLT1E3 LTR MaLR -2 622 245 1662 102 0 15 chrX 24894936 24895200 -137704730 - L1MA2 LINE L1 -6 6298 6039 2554 196 46 61 chrX 24895200 24895442 -137704488 - MLT1E3 LTR MaLR -379 245 1 326 80 20 0 chrX 24896210 24896260 -137703670 + (TG)n Simple_repeat Simple_repeat 1 51 0 885 199 68 0 chrX 24896408 24896599 -137703331 + MER3 DNA MER1_type 6 209 0 801 222 61 17 chrX 24896763 24896943 -137702987 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chrX 24897610 24897633 -137702297 + AT_rich Low_complexity Low_complexity 1 23 0 378 281 26 17 chrX 24897652 24897803 -137702127 + MIR SINE MIR 2 154 -62 43 20 0 0 chrX 24897821 24897871 -137702059 + AT_rich Low_complexity Low_complexity 1 50 0 1293 203 88 88 chrX 24898238 24898820 -137701110 - L1MC4 LINE L1 -1 8041 7460 276 222 0 14 chrX 24899205 24899277 -137700653 + (TA)n Simple_repeat Simple_repeat 2 72 0 291 54 0 0 chrX 24899736 24899773 -137700157 + (TC)n Simple_repeat Simple_repeat 2 38 0 250 311 7 82 chrX 24899783 24899918 -137700012 + MLT1J2 LTR MaLR 198 322 -128 352 200 78 38 chrX 24900001 24900149 -137699781 + HsTC2 DNA Tc2 35 1895 -3 249 214 0 0 chrX 24901299 24901355 -137698575 + L1MC4 LINE L1 6648 6703 -1339 351 312 0 51 chrX 24901361 24901518 -137698412 + (TATATG)n Simple_repeat Simple_repeat 5 153 0 423 330 72 5 chrX 24901810 24902004 -137697926 + MIR SINE MIR 2 208 -54 2996 53 0 0 chrX 24902348 24902726 -137697204 - L1PA8 LINE L1 -1 6171 5794 751 133 0 0 chrX 24903269 24903382 -137696548 - FLAM_C SINE Alu -18 125 13 225 368 153 38 chrX 24903881 24904880 -137695050 + L2 LINE L2 99 1212 -2102 369 276 97 38 chrX 24905292 24905686 -137694244 - L1MEd LINE L1 -4784 1612 1178 1392 210 135 42 chrX 24906059 24906517 -137693413 + MLT1D LTR MaLR 5 505 0 267 39 0 115 chrX 24906658 24906710 -137693220 + MADE1 DNA Mariner 1 46 -34 3642 115 15 20 chrX 24906762 24907360 -137692570 - L1MA8 LINE L1 -2 6289 5695 317 298 61 29 chrX 24907360 24907605 -137692325 - L1MEd LINE L1 -5236 969 717 225 250 19 0 chrX 24907672 24907724 -137692206 - L1MEd LINE L1 -6051 154 102 2145 104 0 13 chrX 24908135 24908434 -137691496 + AluSg SINE Alu 1 295 -15 3429 98 11 25 chrX 24908925 24909670 -137690260 + MER4A-int LTR ERV1 4188 6598 0 615 141 0 10 chrX 24909671 24909770 -137690160 + MER4A LTR ERV1 1 98 -566 1520 149 16 24 chrX 24909770 24910086 -137689844 + MER4A LTR ERV1 261 632 -32 2263 88 3 32 chrX 24910379 24910687 -137689243 + AluSp SINE Alu 1 299 -14 285 214 171 0 chrX 24911464 24911534 -137688396 - MIR SINE MIR -84 178 97 209 425 34 14 chrX 24911721 24911928 -137688002 + L2 LINE L2 2850 3060 -212 1346 255 60 78 chrX 24912106 24912824 -137687106 + L1ME3A LINE L1 5454 6158 -12 1402 200 45 99 chrX 24912891 24913375 -137686555 - LTR40b LTR ERVL -3 459 2 2115 68 0 53 chrX 24913567 24913786 -137686144 - L1PA8 LINE L1 -3 6169 5971 6125 132 21 32 chrX 24913786 24914869 -137685061 + MER11C LTR ERVK 1 1071 0 2115 68 0 53 chrX 24914869 24914971 -137684959 - L1PA8 LINE L1 -201 5971 5865 1800 122 6 97 chrX 24915183 24915503 -137684427 + AluSx SINE Alu 5 295 -17 2135 141 0 0 chrX 24916152 24916457 -137683473 + AluSx SINE Alu 1 305 -7 214 307 55 55 chrX 24916753 24916880 -137683050 - L2 LINE L2 -214 3099 2973 239 390 65 30 chrX 24916928 24917128 -137682802 - L2 LINE L2 -463 2851 2645 5301 26 3 2 chrX 24917284 24917938 -137681992 - L1PA4 LINE L1 0 6155 5533 1533 47 0 0 chrX 24917938 24918130 -137681800 + L1P LINE L1 4951 5142 -1004 4594 128 157 26 chrX 24918855 24919853 -137680077 - MER11B LTR ERVK -4 1232 1 657 250 49 64 chrX 24920143 24920407 -137679523 - MLT1H LTR MaLR -216 333 74 449 204 0 9 chrX 24920705 24920813 -137679117 + CT-rich Low_complexity Low_complexity 3 109 0 187 340 21 32 chrX 24921463 24921557 -137678373 - MIR SINE MIR -116 146 54 214 327 27 60 chrX 24921751 24921901 -137678029 - MIR SINE MIR -110 152 8 207 288 16 88 chrX 24922565 24922690 -137677240 + MIR SINE MIR 91 207 -1 23 33 0 0 chrX 24923617 24923647 -137676283 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 24923993 24924015 -137675915 + AT_rich Low_complexity Low_complexity 1 22 0 331 279 106 0 chrX 24924104 24924208 -137675722 - MIR3 SINE MIR 0 208 94 180 333 107 0 chrX 24924440 24924515 -137675415 - L2 LINE L2 -4 3268 3186 815 284 13 4 chrX 24927815 24928040 -137671890 - LTR16B LTR ERVL 0 464 238 312 27 0 0 chrX 24928805 24928842 -137671088 + (CA)n Simple_repeat Simple_repeat 2 38 0 1178 273 22 20 chrX 24929022 24929429 -137670501 + MLT1I LTR MaLR 2 409 0 321 26 0 0 chrX 24929561 24929599 -137670331 + (CA)n Simple_repeat Simple_repeat 1 38 0 1642 221 60 2 chrX 24929622 24930038 -137669892 + L1MD3 LINE L1 7542 7981 -14 279 0 0 0 chrX 24930130 24930161 -137669769 + (TG)n Simple_repeat Simple_repeat 2 32 0 1789 256 102 26 chrX 24930267 24930883 -137669047 - MLT2F LTR ERVL 0 663 1 2030 138 0 0 chrX 24931394 24931676 -137668254 + AluSx SINE Alu 1 282 -30 21 36 0 0 chrX 24931756 24931784 -137668146 + AT_rich Low_complexity Low_complexity 1 28 0 225 178 0 0 chrX 24934758 24934803 -137665127 + CT-rich Low_complexity Low_complexity 1 45 0 359 261 79 66 chrX 24935612 24935825 -137664105 - LTR16A1 LTR ERVL -113 378 145 3053 147 23 0 chrX 24936251 24936496 -137663434 - Tigger1 DNA MER2_type -950 1468 1230 2299 76 7 13 chrX 24936496 24936799 -137663131 - AluSp SINE Alu -12 301 1 3053 147 23 0 chrX 24936799 24937069 -137662861 - Tigger1 DNA MER2_type -1188 1230 941 747 278 63 73 chrX 24937156 24937555 -137662375 + MLT1I LTR MaLR 15 409 0 2045 135 27 0 chrX 24938080 24938377 -137661553 + AluSx SINE Alu 1 305 -7 1548 170 61 0 chrX 24939597 24939874 -137660056 + AluJo SINE Alu 5 298 -14 257 298 0 0 chrX 24939881 24939938 -137659992 + L2 LINE L2 3208 3264 -8 22 0 0 0 chrX 24939945 24939967 -137659963 + AT_rich Low_complexity Low_complexity 1 22 0 2456 87 0 0 chrX 24940065 24940376 -137659554 + AluY SINE Alu 1 311 0 3070 123 7 2 chrX 24941627 24942083 -137657847 - LTR22A LTR ERVK 0 458 1 207 250 29 77 chrX 24942249 24942353 -137657577 - MIR3 SINE MIR -7 201 103 24 32 0 0 chrX 24943551 24943582 -137656348 + AT_rich Low_complexity Low_complexity 1 31 0 216 159 32 16 chrX 24943828 24943891 -137656039 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chrX 24944219 24944240 -137655690 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 24944386 24944409 -137655521 + AT_rich Low_complexity Low_complexity 1 23 0 286 270 86 66 chrX 24944925 24945077 -137654853 + MIR SINE MIR 100 254 -8 371 314 93 51 chrX 24945592 24945698 -137654232 - L1M4 LINE L1 -1725 4421 4321 884 274 9 5 chrX 24945698 24945921 -137654009 + MER58A DNA MER1_type 1 224 0 371 314 93 51 chrX 24945921 24946340 -137653590 - L1M4 LINE L1 -1825 4321 3874 2355 63 3 0 chrX 24946992 24947306 -137652624 - AluSp SINE Alu 0 315 1 531 256 111 25 chrX 24947372 24947571 -137652359 - MLT1L LTR MaLR -51 564 349 232 156 78 109 chrX 24947632 24947696 -137652234 - MLT1L LTR MaLR -553 62 1 26 64 0 0 chrX 24947929 24947976 -137651954 + AT_rich Low_complexity Low_complexity 1 47 0 2320 110 3 0 chrX 24948411 24948721 -137651209 - AluSp SINE Alu -2 311 1 26 50 0 0 chrX 24948806 24948846 -137651084 + AT_rich Low_complexity Low_complexity 1 40 0 490 185 0 0 chrX 24948846 24948927 -137651003 + MER58B DNA MER1_type 261 341 0 194 0 39 0 chrX 24948973 24948999 -137650931 + (TTATA)n Simple_repeat Simple_repeat 5 31 0 303 86 66 66 chrX 24949009 24949160 -137650770 + (TATAA)n Simple_repeat Simple_repeat 2 152 0 293 306 31 10 chrX 24949597 24949695 -137650235 - LTR67 LTR ERVL -359 198 99 185 309 36 48 chrX 24950550 24950634 -137649296 - MIR3 SINE MIR -5 203 121 315 0 0 0 chrX 24951776 24951811 -137648119 + (CA)n Simple_repeat Simple_repeat 2 36 0 284 392 88 10 chrX 24951981 24952175 -137647755 - MIR SINE MIR -32 230 22 182 411 14 20 chrX 24952319 24952465 -137647465 - MIR3 SINE MIR -36 172 28 299 280 93 0 chrX 24952704 24952811 -137647119 + MIR SINE MIR 146 262 0 1702 216 136 70 chrX 24953031 24953350 -137646580 + MLT1E1 LTR MaLR 1 298 -356 1518 81 25 51 chrX 24953350 24953586 -137646344 + MER30 DNA MER1_type 1 230 0 1702 216 136 70 chrX 24953586 24953878 -137646052 + MLT1E1 LTR MaLR 298 652 -2 1522 244 111 19 chrX 24955195 24955524 -137644406 - MER90 LTR ERV1 -6 569 173 2911 110 2 70 chrX 24955524 24956035 -137643895 - L1PA15 LINE L1 -13 6152 5677 1522 244 111 19 chrX 24956035 24956226 -137643704 - MER90 LTR ERV1 -402 173 1 572 346 9 14 chrX 24956255 24956466 -137643464 + MLT1K LTR MaLR 83 292 -296 497 307 48 30 chrX 24956891 24957122 -137642808 + MLT1K LTR MaLR 332 566 -22 1547 211 52 55 chrX 24957180 24957582 -137642348 - MER92A LTR ERV1 -11 401 1 28 48 0 0 chrX 24958282 24958324 -137641606 + AT_rich Low_complexity Low_complexity 1 42 0 2052 138 0 0 chrX 24958435 24958732 -137641198 - AluSg SINE Alu -13 297 1 446 139 0 0 chrX 24959166 24959252 -137640678 - L1PB1 LINE L1 -1 6150 6065 1786 146 61 30 chrX 24960937 24961300 -137638630 - THE1C LTR MaLR 0 375 2 9927 123 9 38 chrX 24961301 24962924 -137637006 - THE1C-int LTR MaLR 0 1580 4 1899 137 58 28 chrX 24962927 24963291 -137636639 - THE1C LTR MaLR 0 375 1 267 300 23 23 chrX 24963377 24963477 -137636453 + GA-rich Low_complexity Low_complexity 3 173 0 231 299 19 19 chrX 24963842 24963949 -137635981 + HAL1b LINE L1 221 327 -1021 15878 140 37 5 chrX 24964436 24967080 -137632850 + Tigger4(Zombi) DNA MER2_type 1 2731 0 3025 218 71 115 chrX 24967295 24968658 -137631272 + MER109 Unknown Unknown 1 1228 -1204 821 86 36 21 chrX 24968658 24968798 -137631132 + L1MA5 LINE L1 6157 6298 -2 3025 218 71 115 chrX 24968798 24969234 -137630696 + MER109 Unknown Unknown 1228 1682 -750 13870 102 4 15 chrX 25019235 25020751 -137579179 + L1P LINE L1 709 2195 -3951 2485 52 0 13 chrX 25020751 25021060 -137578870 + AluY SINE Alu 1 305 -6 13870 102 4 15 chrX 25021060 25021757 -137578173 + L1P LINE L1 2195 2898 -3248 317 283 64 29 chrX 25022157 25022330 -137577600 - LTR16A LTR ERVL -195 255 77 207 293 13 53 chrX 25022605 25022680 -137577250 + MIR3 SINE MIR 90 161 -47 2117 115 6 0 chrX 25022929 25023242 -137576688 + L1MC1 LINE L1 5999 6313 -20 520 146 0 62 chrX 25023948 25024140 -137575790 + (AGGGGG)n Simple_repeat Simple_repeat 1 180 0 * 645 157 0 0 chrX 25024093 25024227 -137575703 + G-rich Low_complexity Low_complexity 1 134 0 37604 42 29 2 chrX 25024273 25029240 -137570690 + L1P LINE L1 111 5211 -935 7226 36 19 0 chrX 25029350 25030671 -137569259 + L1PA5 LINE L1 4817 6154 0 25149 98 7 11 chrX 25030671 25034835 -137565095 - L1P3 LINE L1 -1529 4932 763 485 314 56 20 chrX 25034839 25035196 -137564734 - L1MC/D LINE L1 -1988 5820 5451 292 252 14 35 chrX 25035199 25035342 -137564588 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 2852 198 13 63 chrX 25035364 25036041 -137563889 - MER82 DNA MER2_type -10 643 1 1592 31 5 0 chrX 25036156 25036350 -137563580 - L1PA4 LINE L1 -3 6152 5958 534 210 7 110 chrX 25036371 25036512 -137563418 + L1M3 LINE L1 5100 5197 -949 270 0 0 0 chrX 25036512 25036542 -137563388 + (TG)n Simple_repeat Simple_repeat 2 31 0 534 210 7 110 chrX 25036542 25036690 -137563240 + L1M3 LINE L1 5197 5359 -787 278 304 13 0 chrX 25036753 25036832 -137563098 + MER82 DNA MER2_type 48 127 -526 7704 132 35 11 chrX 25036832 25038227 -137561703 - Ricksha DNA DNA -39 3207 1821 1661 153 3 3 chrX 25038225 25038507 -137561423 - Ricksha DNA DNA -966 288 7 * 1455 164 0 22 chrX 25038513 25038787 -137561143 + L1M3 LINE L1 5349 5616 -567 586 266 94 47 chrX 25038787 25039126 -137560804 - LTR16C LTR ERVL -23 468 114 229 261 91 11 chrX 25039755 25039843 -137560087 + MIR3 SINE MIR 105 199 -9 252 149 68 0 chrX 25040216 25040290 -137559640 + (TA)n Simple_repeat Simple_repeat 1 79 0 757 191 105 34 chrX 25041411 25041620 -137558310 - MER58A DNA MER1_type 0 224 1 261 289 106 10 chrX 25041822 25041926 -137558004 + MIR SINE MIR 99 212 -50 6193 101 31 8 chrX 25042181 25043428 -137556502 - L1PA15 LINE L1 -2 6163 4905 1610 62 0 5 chrX 25044047 25044241 -137555689 - AluY SINE Alu -118 193 1 2383 89 0 3 chrX 25044577 25044879 -137555051 - AluSq SINE Alu -12 301 1 833 174 12 12 chrX 25045801 25045962 -137553968 + MER58B DNA MER1_type 181 341 0 327 49 0 0 chrX 25046085 25046126 -137553804 + (TG)n Simple_repeat Simple_repeat 1 41 0 193 25 0 100 chrX 25046308 25046348 -137553582 + (CATA)n Simple_repeat Simple_repeat 3 38 0 3063 238 38 56 chrX 25046978 25048228 -137551702 - L1MC4 LINE L1 0 8042 6815 318 301 124 18 chrX 25048601 25048714 -137551216 + MIR SINE MIR 21 145 -63 25 51 0 0 chrX 25048847 25048886 -137551044 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chrX 25048966 25048990 -137550940 + AT_rich Low_complexity Low_complexity 1 24 0 2120 168 0 15 chrX 25049251 25049557 -137550373 + MER89 LTR ERV1 4 401 -158 2800 101 28 14 chrX 25049557 25049983 -137549947 - MSTB1 LTR MaLR 0 432 1 2120 168 0 15 chrX 25049983 25050140 -137549790 + MER89 LTR ERV1 401 559 0 320 314 93 0 chrX 25051764 25051904 -137548026 - MIR SINE MIR -6 256 104 450 88 0 0 chrX 25052236 25052304 -137547626 + (CA)n Simple_repeat Simple_repeat 2 69 0 413 366 45 24 chrX 25052963 25053209 -137546721 + MIR SINE MIR 3 253 -9 1814 111 49 85 chrX 25054064 25054453 -137545477 + THE1C LTR MaLR 1 375 0 285 155 0 0 chrX 25054639 25054697 -137545233 - L1MA4A LINE L1 -11 6292 6235 23 0 0 0 chrX 25055644 25055667 -137544263 + AT_rich Low_complexity Low_complexity 1 23 0 798 259 10 0 chrX 25056396 25056589 -137543341 + L2 LINE L2 2137 2331 -983 333 315 36 12 chrX 25057547 25057712 -137542218 - MER69A DNA AcHobo -8 169 1 2181 107 7 16 chrX 25057915 25058224 -137541706 - AluSq SINE Alu -7 306 1 2479 175 13 0 chrX 25058261 25058735 -137541195 - L1MA8 LINE L1 -221 6070 5591 1850 73 44 0 chrX 25058768 25059043 -137540887 - L1MA5 LINE L1 -2 6298 6012 2252 72 7 0 chrX 25059043 25059321 -137540609 + AluSp SINE Alu 18 297 -16 5019 112 45 2 chrX 25059329 25060132 -137539798 + L1PA14 LINE L1 5325 6161 0 420 254 15 62 chrX 25060841 25060971 -137538959 + L2 LINE L2 3190 3313 0 1484 143 0 9 chrX 25061223 25061454 -137538476 - AluJb SINE Alu -11 301 73 429 171 0 0 chrX 25061492 25061562 -137538368 - AluJb SINE Alu -242 70 1 31 58 0 0 chrX 25061711 25061763 -137538167 + AT_rich Low_complexity Low_complexity 1 52 0 231 310 20 42 chrX 25062104 25062221 -137537709 - MIR SINE MIR -67 141 22 21 0 0 0 chrX 25062571 25062592 -137537338 + AT_rich Low_complexity Low_complexity 1 21 0 1125 77 26 0 chrX 25063196 25063351 -137536579 + L1MA3 LINE L1 6146 6304 -1 1563 201 115 21 chrX 25063923 25064401 -137535529 - Charlie1b DNA MER1_type 0 523 1 520 298 148 45 chrX 25064693 25065112 -137534818 + L1M4 LINE L1 2113 2574 -3572 365 119 0 45 chrX 25065188 25065255 -137534675 - L1PA16 LINE L1 -16 6150 6087 8940 101 19 3 chrX 25065257 25066490 -137533440 - HSMAR1 DNA Mariner -32 1255 4 3859 140 10 2 chrX 25066499 25067113 -137532817 - L1PB4 LINE L1 -102 6054 5436 515 289 83 40 chrX 25067118 25067818 -137532112 + L1M4 LINE L1 2666 3395 -2751 235 300 57 51 chrX 25068014 25068364 -137531566 + L1M4 LINE L1 3689 4040 -2106 253 251 110 21 chrX 25068667 25068858 -137531072 + L1M4 LINE L1 4498 4705 -1441 2263 143 34 31 chrX 25068896 25069314 -137530616 + MSTB1 LTR MaLR 1 419 -13 334 313 140 44 chrX 25069446 25069947 -137529983 - L1 LINE L1 -2422 3724 3176 1883 178 14 17 chrX 25070463 25070812 -137529118 - MER7A DNA MER2_type 0 346 1 1957 212 24 21 chrX 25071069 25071535 -137528395 - MLT1C LTR MaLR 0 467 1 2488 63 7 0 chrX 25071809 25072111 -137527819 + AluSp SINE Alu 1 304 -9 1965 162 31 11 chrX 25072719 25073071 -137526859 + MLT1A1 LTR MaLR 1 359 -6 26 52 0 17 chrX 25073491 25073534 -137526396 + AT_rich Low_complexity Low_complexity 1 44 -13 2078 69 3 100 chrX 25073534 25073854 -137526076 - AluSq SINE Alu -24 289 1 26 52 0 17 chrX 25073854 25073868 -137526062 + AT_rich Low_complexity Low_complexity 44 57 0 2331 71 0 43 chrX 25073899 25074224 -137525706 - AluY SINE Alu 0 311 1 25 0 0 0 chrX 25075175 25075200 -137524730 + AT_rich Low_complexity Low_complexity 1 25 0 2486 68 0 0 chrX 25075304 25075615 -137524315 - AluY SINE Alu 0 311 1 599 234 8 0 chrX 25076018 25076142 -137523788 - L2 LINE L2 -3 3310 3186 35 24 0 0 chrX 25076179 25076221 -137523709 + AT_rich Low_complexity Low_complexity 1 42 0 584 343 53 4 chrX 25076320 25076565 -137523365 - MIR SINE MIR 0 262 6 * 1685 312 219 20 chrX 25076564 25077266 -137522664 - L2 LINE L2 -271 3042 2481 335 246 67 73 chrX 25077266 25077445 -137522485 + MER5B DNA MER1_type 1 178 0 1685 312 219 20 chrX 25077445 25078444 -137521486 - L2 LINE L2 -832 2481 994 22 80 0 0 chrX 25078962 25079012 -137520918 + AT_rich Low_complexity Low_complexity 1 50 0 270 318 135 41 chrX 25079530 25079700 -137520230 - MIR SINE MIR -70 192 7 427 136 48 87 chrX 25079701 25079804 -137520126 + MER92B LTR ERV1 1 99 -537 2271 79 41 0 chrX 25079817 25080108 -137519822 - AluSg SINE Alu -7 303 1 1998 121 73 16 chrX 25080108 25080423 -137519507 - MER1B DNA MER1_type -6 333 1 1628 221 9 52 chrX 25080425 25080846 -137519084 + MER92B LTR ERV1 92 494 -142 932 112 0 0 chrX 25080846 25080858 -137519072 - L1MA8 LINE L1 -339 5952 5941 793 223 159 0 chrX 25080858 25081078 -137518852 - L1MA9 LINE L1 -226 5940 5686 666 205 8 16 chrX 25081081 25081330 -137518600 + L1MA9 LINE L1 5948 6290 -22 907 58 22 0 chrX 25081367 25081505 -137518425 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 500 207 124 8 chrX 25081510 25081631 -137518299 + MER92B LTR ERV1 498 632 -4 2280 146 26 81 chrX 25082702 25083209 -137516721 - L1MB2 LINE L1 0 6171 5693 264 301 57 67 chrX 25083214 25083231 -137516699 + MER20 DNA MER1_type 7 23 -196 2529 70 21 49 chrX 25083231 25083617 -137516313 + THE1C LTR MaLR 1 375 0 264 301 57 67 chrX 25083617 25083808 -137516122 + MER20 DNA MER1_type 23 213 -6 568 248 80 118 chrX 25084012 25084307 -137515623 + MER34 LTR ERV1 1 306 -236 2122 136 128 10 chrX 25084307 25084690 -137515240 + MSTA LTR MaLR 1 428 0 568 248 80 118 chrX 25084690 25084848 -137515082 + MER34 LTR ERV1 306 432 -110 2285 98 3 0 chrX 25084848 25085145 -137514785 + AluSq SINE Alu 1 298 -15 568 248 80 118 chrX 25085145 25085250 -137514680 + MER34 LTR ERV1 432 539 -3 303 250 65 28 chrX 25085615 25085723 -137514207 - L1ME3A LINE L1 -214 5956 5845 1272 165 132 51 chrX 25085917 25086095 -137513835 + LTR37A LTR ERV1 1 163 -263 396 0 0 0 chrX 25086095 25086139 -137513791 + (CA)n Simple_repeat Simple_repeat 2 45 0 1272 165 132 51 chrX 25086139 25086354 -137513576 + LTR37A LTR ERV1 163 426 0 216 97 0 0 chrX 25086814 25086845 -137513085 + (CA)n Simple_repeat Simple_repeat 2 32 0 47 73 0 0 chrX 25087433 25087529 -137512401 + AT_rich Low_complexity Low_complexity 1 96 0 2259 113 0 3 chrX 25087581 25087892 -137512038 - AluSq SINE Alu -3 310 1 37 62 0 0 chrX 25087937 25088002 -137511928 + AT_rich Low_complexity Low_complexity 1 65 0 13809 44 2 5 chrX 25088263 25090751 -137509179 - L1PA5 LINE L1 -3 6151 3666 309 250 150 0 chrX 25091750 25091850 -137508080 + MER92B LTR ERV1 1 115 -521 354 179 0 0 chrX 25092000 25092067 -137507863 + MER92C LTR ERV1 487 553 -1 746 182 10 134 chrX 25092469 25092760 -137507170 + MER31-int LTR ERV1 1039 1293 -3643 1286 233 33 100 chrX 25093109 25093598 -137506332 + MER31-int LTR ERV1 3778 4233 -703 502 209 16 39 chrX 25093615 25093744 -137506186 + LTR37A LTR ERV1 1 126 -300 257 150 0 0 chrX 25093802 25093842 -137506088 + MER31-int LTR ERV1 4330 4369 -567 390 237 10 0 chrX 25093881 25093978 -137505952 + MER31-int LTR ERV1 4372 4469 -467 260 260 0 39 chrX 25094045 25094122 -137505808 + MER31-int LTR ERV1 4482 4555 -381 310 231 0 0 chrX 25094579 25094644 -137505286 + MER92B LTR ERV1 1 65 -571 360 167 30 0 chrX 25094864 25094930 -137505000 + MER92C LTR ERV1 487 554 0 1278 181 30 77 chrX 25095637 25096078 -137503852 - LTR37A LTR ERV1 0 426 7 6680 115 14 21 chrX 25096485 25097298 -137502632 + Tigger1 DNA MER2_type 1 807 -1611 2311 91 13 0 chrX 25097298 25097607 -137502323 + AluSp SINE Alu 1 313 0 6680 115 14 21 chrX 25097607 25097827 -137502103 + Tigger1 DNA MER2_type 807 1027 -1391 1570 136 0 4 chrX 25097827 25098062 -137501868 - AluSg/x SINE Alu -1 309 76 2540 159 52 11 chrX 25098062 25098348 -137501582 + Tigger1 DNA MER2_type 1919 2236 -182 1679 184 0 24 chrX 25098348 25098676 -137501254 - AluJb SINE Alu 0 321 1 2540 159 52 11 chrX 25098676 25098864 -137501066 + Tigger1 DNA MER2_type 2236 2415 -3 242 279 112 6 chrX 25098867 25099028 -137500902 - L1MEd LINE L1 -2380 3749 3572 243 0 0 0 chrX 25099031 25099058 -137500872 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 9906 30 0 0 chrX 25099064 25101009 -137498921 - L1PA3 LINE L1 -3 6152 4206 12321 31 0 1 chrX 25101009 25102508 -137497422 + L1P LINE L1 2515 4012 -2134 394 312 26 64 chrX 25102539 25102773 -137497157 - L1MEd LINE L1 -2580 3549 3325 4885 158 43 14 chrX 25102779 25103749 -137496181 - L1MB2 LINE L1 0 6171 5172 373 191 247 12 chrX 25103883 25104045 -137495885 - L1MEd LINE L1 -2920 3209 3010 333 262 159 24 chrX 25104214 25104466 -137495464 - L1MEd LINE L1 -4908 1211 926 22 0 0 0 chrX 25104479 25104501 -137495429 + AT_rich Low_complexity Low_complexity 1 22 0 237 33 0 0 chrX 25104546 25104576 -137495354 + (TTG)n Simple_repeat Simple_repeat 2 31 0 420 364 20 54 chrX 25104620 25104917 -137495013 - L1MEd LINE L1 -5730 389 103 867 125 7 0 chrX 25105040 25105184 -137494746 + L1MA4A LINE L1 6147 6291 -12 222 357 71 0 chrX 25105437 25105563 -137494367 + L3 LINE CR1 940 1074 -503 569 330 115 3 chrX 25105596 25105944 -137493986 + L3 LINE CR1 1190 1576 -1 2822 150 17 9 chrX 25106429 25106890 -137493040 + MLT1C LTR MaLR 3 467 0 24 0 0 0 chrX 25107368 25107392 -137492538 + AT_rich Low_complexity Low_complexity 1 24 0 357 286 173 1 chrX 25107706 25107905 -137492025 + MIR SINE MIR 34 262 0 2536 172 36 12 chrX 25108069 25108562 -137491368 + MLT1D LTR MaLR 1 505 0 1208 248 94 64 chrX 25108591 25109123 -137490807 - MLT1H LTR MaLR -1 548 1 29 0 0 0 chrX 25110040 25110069 -137489861 + AT_rich Low_complexity Low_complexity 1 29 0 297 206 48 0 chrX 25110071 25110134 -137489796 - L1MD2 LINE L1 -235 6124 6059 * 1218 205 4 0 chrX 25110131 25110380 -137489550 + L1ME1 LINE L1 5680 5929 -237 189 390 134 23 chrX 25110380 25110724 -137489206 + L2 LINE L2 2595 2976 -338 207 69 0 0 chrX 25111295 25111324 -137488606 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 329 242 50 43 chrX 25112047 25112208 -137487722 - MER103 DNA DNA -2 164 3 331 143 18 0 chrX 25112594 25112650 -137487280 - THE1C LTR MaLR 0 375 319 462 148 289 0 chrX 25113388 25113521 -137486409 - MER5A DNA MER1_type -10 179 4 255 365 24 16 chrX 25115465 25115591 -137484339 - L3 LINE CR1 -951 626 500 454 383 24 8 chrX 25115857 25116105 -137483825 - L3 LINE CR1 -1109 468 217 472 340 115 32 chrX 25116740 25117140 -137482790 - L2 LINE L2 0 3313 2881 231 218 0 0 chrX 25117196 25117251 -137482679 - L1MB2 LINE L1 -1 6170 6116 394 331 71 39 chrX 25117279 25117587 -137482343 + L1M2 LINE L1 4 321 -6528 * 2406 160 60 8 chrX 25117583 25118292 -137481638 + L1PA14 LINE L1 4806 5542 -624 6908 181 18 14 chrX 25118316 25120189 -137479741 + L1PA12 LINE L1 1926 3818 -3766 4020 109 6 19 chrX 25120190 25120553 -137479377 + L1PA14 LINE L1 5542 5895 -266 1858 167 0 3 chrX 25120553 25120852 -137479078 + AluJb SINE Alu 1 298 -14 4020 109 6 19 chrX 25120852 25121114 -137478816 + L1PA14 LINE L1 5895 6159 -2 3263 125 101 12 chrX 25121114 25121687 -137478243 + L1PB4 LINE L1 5530 6154 -2 407 200 0 0 chrX 25121712 25121782 -137478148 - FAM SINE Alu -27 158 89 2600 161 33 4 chrX 25121785 25122244 -137477686 - L1MB2 LINE L1 -77 6094 5623 * 43308 44 4 1 chrX 25122242 25128373 -137471557 + L1PA4 LINE L1 1 6155 0 2245 181 55 4 chrX 25128387 25129098 -137470832 - L1MB2 LINE L1 -544 5639 4887 22 35 0 0 chrX 25129106 25129135 -137470795 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 25131065 25131088 -137468842 + AT_rich Low_complexity Low_complexity 1 23 0 398 313 88 9 chrX 25131366 25131703 -137468227 - L1ME4a LINE L1 -216 5905 5523 2221 114 0 16 chrX 25132048 25132363 -137467567 - AluSg SINE Alu 0 310 1 241 293 13 27 chrX 25133844 25133919 -137466011 - 7SK RNA RNA -119 74 1 239 299 75 37 chrX 25133979 25134086 -137465844 - MIR SINE MIR -72 136 26 1131 182 19 0 chrX 25134316 25134530 -137465400 - MER20 DNA MER1_type 0 219 2 496 241 146 50 chrX 25135010 25135271 -137464659 - L2 LINE L2 -1153 2161 1876 207 0 0 0 chrX 25135279 25135302 -137464628 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2018 110 22 0 chrX 25135302 25135574 -137464356 - AluSx SINE Alu -34 278 1 300 339 82 6 chrX 25135879 25136062 -137463868 + L3b LINE CR1 1145 1341 -242 255 61 0 0 chrX 25136934 25136967 -137462963 + (CATCT)n Simple_repeat Simple_repeat 3 35 0 1246 171 49 4 chrX 25136974 25137238 -137462692 + MER33 DNA MER1_type 1 276 -48 572 311 36 15 chrX 25137546 25137742 -137462188 - MIR SINE MIR -12 250 51 392 267 30 107 chrX 25139497 25139873 -137460057 + MLT1H LTR MaLR 28 377 -32 287 87 0 0 chrX 25141049 25141095 -137458835 + L1MA3 LINE L1 6260 6305 0 3813 168 27 3 chrX 25141520 25142223 -137457707 + L1MA9 LINE L1 5255 5974 -338 736 184 0 0 chrX 25142219 25142360 -137457570 - L1 LINE L1 -1154 4992 4852 * 1909 161 18 0 chrX 25142366 25142696 -137457234 + L1PB4 LINE L1 5807 6142 -14 1892 143 23 17 chrX 25142713 25142865 -137457065 + L1MA9 LINE L1 5961 6111 -201 1646 169 83 18 chrX 25142865 25143191 -137456739 - MER7A DNA MER2_type -1 345 1 1892 143 23 17 chrX 25143191 25143387 -137456543 + L1MA9 LINE L1 6111 6311 -1 226 268 10 10 chrX 25143482 25143579 -137456351 + CT-rich Low_complexity Low_complexity 4 100 0 281 317 28 14 chrX 25144096 25144241 -137455689 + HAL1 LINE L1 1112 1258 -1249 360 176 40 0 chrX 25144362 25144436 -137455494 + MLT1H LTR MaLR 429 505 0 351 311 96 47 chrX 25145199 25145562 -137454368 + L1MC/D LINE L1 4909 5289 -857 1170 264 57 10 chrX 25145570 25145953 -137453977 + L1MC/D LINE L1 5319 5719 -2089 1756 178 11 0 chrX 25145970 25146251 -137453679 + AluJo SINE Alu 5 288 -24 2073 138 0 19 chrX 25146411 25146722 -137453208 + AluSx SINE Alu 1 305 -7 1037 127 16 19 chrX 25146734 25146947 -137452983 + L1 LINE L1 5101 5310 -854 452 226 110 14 chrX 25146951 25147097 -137452833 + L1MC/D LINE L1 5560 5719 -2089 5508 86 56 4 chrX 25147125 25147953 -137451977 + L1MA2 LINE L1 5433 6303 -1 2363 97 0 7 chrX 25147971 25148279 -137451651 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 25148485 25148507 -137451423 + AT_rich Low_complexity Low_complexity 1 22 0 1491 189 108 44 chrX 25148782 25149125 -137450805 - MLT1A1 LTR MaLR 0 365 1 226 224 0 20 chrX 25151005 25151054 -137448876 + MER5A DNA MER1_type 4 51 -138 1663 181 46 38 chrX 25151054 25151238 -137448692 + MLT1B LTR MaLR 1 182 -208 351 0 0 0 chrX 25151238 25151277 -137448653 + (TC)n Simple_repeat Simple_repeat 2 40 0 1663 181 46 38 chrX 25151277 25151463 -137448467 + MLT1B LTR MaLR 182 374 -16 548 239 51 0 chrX 25151469 25151607 -137448323 + MER5A DNA MER1_type 45 189 0 201 232 89 18 chrX 25152796 25152852 -137447078 + L2 LINE L2 3206 3265 -7 1559 171 25 4 chrX 25154299 25154579 -137445351 - MLT1C LTR MaLR -50 417 132 362 305 150 0 chrX 25154885 25155052 -137444878 - L1ME LINE L1 -3459 2621 2430 341 314 50 0 chrX 25155508 25155648 -137444282 - L1ME LINE L1 -5887 183 37 1497 164 47 3 chrX 25156351 25156650 -137443280 - L1MA7 LINE L1 -7 6284 5973 420 20 0 0 chrX 25157116 25157165 -137442765 + (TG)n Simple_repeat Simple_repeat 2 50 0 630 178 14 62 chrX 25157666 25157812 -137442118 + L1ME LINE L1 3996 4134 -2012 * 3583 210 65 17 chrX 25157810 25158934 -137440996 + L1ME LINE L1 4421 5599 -567 1016 199 76 0 chrX 25158938 25159229 -137440701 + L1MB8 LINE L1 3029 3341 -2805 614 98 20 0 chrX 25159231 25159333 -137440597 + L1PB2 LINE L1 6046 6149 -2 2299 219 23 9 chrX 25159341 25159913 -137440017 + L1MB8 LINE L1 5593 6172 -6 3278 155 19 70 chrX 25161004 25161732 -137438198 + LTR8 LTR ERV1 1 691 0 183 234 0 43 chrX 25161896 25161943 -137437987 - L2 LINE L2 0 3313 3269 491 360 54 19 chrX 25161947 25162205 -137437725 - L2 LINE L2 -196 3117 2851 1388 205 79 55 chrX 25162281 25162700 -137437230 + MER92B LTR ERV1 15 443 -193 226 232 50 50 chrX 25162702 25162801 -137437129 + LTR48B LTR ERV1 4 102 -542 * 1138 223 61 72 chrX 25162772 25163180 -137436750 + MER39 LTR ERV1 175 706 -1 705 260 15 35 chrX 25163180 25163361 -137436569 + MER92B LTR ERV1 453 629 -7 289 83 0 0 chrX 25163346 25163382 -137436548 - U2 snRNA snRNA -152 36 1 * 404 338 21 0 chrX 25163412 25163554 -137436376 - L2 LINE L2 -331 2982 2838 4929 105 46 15 chrX 25163646 25164401 -137435529 + MER4E LTR ERV1 1 779 0 1923 171 118 0 chrX 25164401 25164782 -137435148 + MSTC LTR MaLR 3 428 0 284 119 153 0 chrX 25165136 25165195 -137434735 - MER92C LTR ERV1 0 554 487 506 213 37 29 chrX 25165280 25165416 -137434514 - MER92B LTR ERV1 -499 137 1 3342 174 34 17 chrX 25165728 25166378 -137433552 + MER67B LTR ERV1 1 661 0 3011 171 71 3 chrX 25166935 25167524 -137432406 - LTR48B LTR ERV1 -2 642 14 576 96 0 67 chrX 25167530 25167594 -137432336 + MER4A LTR ERV1 1 57 -607 5259 99 31 11 chrX 25167594 25168358 -137431572 - LTR17 LTR ERV1 0 780 1 576 96 0 67 chrX 25168358 25168397 -137431533 + MER4A LTR ERV1 57 97 -567 * 1917 111 159 79 chrX 25168394 25168772 -137431158 + MER4A LTR ERV1 257 664 0 4702 160 76 74 chrX 25168884 25169387 -137430543 - LTR17-int LTR ERV1 -164 6167 5667 2271 86 0 38 chrX 25169387 25169701 -137430229 + AluSg SINE Alu 2 303 -7 4702 160 76 74 chrX 25169701 25170350 -137429580 - LTR17-int LTR ERV1 -664 5667 5012 472 243 26 47 chrX 25170357 25170575 -137429355 - LTR48B-int LTR ERV1 -2709 3622 1981 8067 149 22 16 chrX 25170642 25173095 -137426835 - L1MA4A LINE L1 -5 7002 4565 9388 188 112 10 chrX 25173174 25173380 -137426550 - L1MA4A LINE L1 -4724 2125 1941 2254 106 0 0 chrX 25173380 25173681 -137426249 - AluSx SINE Alu -11 301 1 9388 188 112 10 chrX 25173681 25175401 -137424529 - L1MA4A LINE L1 -4908 1941 2 584 211 43 29 chrX 25175460 25175668 -137424262 - LTR48B-int LTR ERV1 -3170 1953 1743 525 196 0 0 chrX 25175880 25175977 -137423953 - LTR48B-int LTR ERV1 -2878 3453 3357 1620 137 57 25 chrX 25176170 25176524 -137423406 - LTR48B-int LTR ERV1 -156 1630 1347 1234 244 40 20 chrX 25176516 25176819 -137423111 - LTR48B-int LTR ERV1 -4231 2100 1792 * 518 199 19 106 chrX 25176817 25177035 -137422895 - LTR48B-int LTR ERV1 -4554 1728 288 * 374 206 0 22 chrX 25177532 25177624 -137422306 - LTR48B-int LTR ERV1 -4954 1377 1288 249 211 173 0 chrX 25177697 25177749 -137422181 - tRNA-Glu-GAG tRNA tRNA 0 75 15 1164 160 4 59 chrX 25178103 25178341 -137421589 - LTR48B-int LTR ERV1 -6081 250 26 4285 138 40 14 chrX 25178341 25179045 -137420885 + MER50 LTR ERV1 1 722 -12 3499 153 42 2 chrX 25179113 25179732 -137420198 - LTR48B LTR ERV1 0 644 1 3834 130 5 44 chrX 25179835 25180496 -137419434 - MER41B LTR ERV1 0 635 1 691 251 163 20 chrX 25180510 25180865 -137419065 + HAL1b LINE L1 19 424 -924 1005 226 99 14 chrX 25181098 25181452 -137418478 + HAL1b LINE L1 719 1102 -246 22 35 0 0 chrX 25182128 25182157 -137417773 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrX 25182539 25182574 -137417356 + AT_rich Low_complexity Low_complexity 1 35 0 192 263 175 0 chrX 25182772 25182829 -137417101 - MIR SINE MIR -118 144 78 2161 85 0 14 chrX 25182912 25183195 -137416735 + AluSq SINE Alu 1 279 -34 315 0 0 0 chrX 25183195 25183230 -137416700 + (CA)n Simple_repeat Simple_repeat 2 36 0 30 77 0 0 chrX 25183277 25183342 -137416588 + AT_rich Low_complexity Low_complexity 1 65 0 296 257 87 87 chrX 25183466 25183672 -137416258 + MLT1H LTR MaLR 97 302 -247 1553 138 42 69 chrX 25183790 25184004 -137415926 + L1MA8 LINE L1 5957 6160 -131 2049 113 20 23 chrX 25184004 25184306 -137415624 + AluSq SINE Alu 1 301 -12 1553 138 42 69 chrX 25184306 25184425 -137415505 + L1MA8 LINE L1 6160 6281 -10 2354 115 46 48 chrX 25184429 25184564 -137415366 + MER75 DNA T2_type 1 135 -379 1673 113 46 0 chrX 25184564 25184836 -137415094 - AluSx SINE Alu 0 318 36 2354 115 46 48 chrX 25184836 25185091 -137414839 + MER75 DNA T2_type 135 391 -123 2122 137 22 0 chrX 25185091 25185404 -137414526 + MER1B DNA MER1_type 20 339 0 446 228 248 21 chrX 25185687 25185832 -137414098 + MER5A DNA MER1_type 9 186 -3 996 233 9 9 chrX 25185845 25186068 -137413862 + MER58A DNA MER1_type 2 224 0 302 212 59 12 chrX 25186140 25186225 -137413705 + MIR SINE MIR 75 163 -99 378 0 0 0 chrX 25186226 25186268 -137413662 + (TG)n Simple_repeat Simple_repeat 2 43 0 1468 151 105 12 chrX 25187143 25187401 -137412529 - AluJo SINE Alu -30 282 1 1097 190 5 5 chrX 25187538 25187722 -137412208 - MER5A DNA MER1_type -5 184 1 427 268 146 0 chrX 25189247 25189411 -137410519 + MIR SINE MIR 45 232 -30 2216 108 18 54 chrX 25189418 25189807 -137410123 - THE1C LTR MaLR 0 375 1 426 85 0 0 chrX 25189826 25189885 -137410045 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 292 304 62 18 chrX 25190923 25191035 -137408895 + L2 LINE L2 3186 3302 -11 517 152 33 0 chrX 25191162 25191254 -137408676 - L1MC4 LINE L1 -3 8039 7945 240 162 0 0 chrX 25191280 25191317 -137408613 - THE1A LTR MaLR -3 352 316 1100 83 0 0 chrX 25191336 25191480 -137408450 - THE1A LTR MaLR -206 149 6 1375 201 98 24 chrX 25191485 25191904 -137408026 - L1MC4 LINE L1 -140 7902 7453 1504 215 29 23 chrX 25191906 25192255 -137407675 + MLT1A1 LTR MaLR 15 365 0 326 241 0 65 chrX 25192263 25192342 -137407588 - L1MC4 LINE L1 -605 7437 7365 2166 179 29 69 chrX 25192342 25192411 -137407519 - MLT1D LTR MaLR 0 505 435 1726 114 20 108 chrX 25192411 25192752 -137407178 + AluYb8 SINE Alu 1 311 -7 2166 179 29 69 chrX 25192752 25193206 -137406724 - MLT1D LTR MaLR -70 435 3 326 241 0 65 chrX 25193206 25193234 -137406696 - L1MC4 LINE L1 -677 7365 7337 2415 61 7 7 chrX 25193269 25193563 -137406367 + AluSq SINE Alu 1 294 -19 206 341 57 8 chrX 25194231 25194354 -137405576 - MIR3 SINE MIR -6 202 74 573 274 48 6 chrX 25195004 25195172 -137404758 + MIR SINE MIR 40 214 -48 1608 195 19 30 chrX 25195442 25195811 -137404119 + MLT1A1 LTR MaLR 1 365 0 326 320 117 22 chrX 25196349 25196580 -137403350 - MIR SINE MIR -9 253 1 382 233 25 114 chrX 25196972 25197061 -137402869 - HAL1 LINE L1 0 2507 2412 1995 105 30 0 chrX 25197061 25197328 -137402602 - AluSx SINE Alu -37 275 1 382 233 25 114 chrX 25197328 25197483 -137402447 - HAL1 LINE L1 -95 2412 2285 506 300 31 0 chrX 25197529 25197659 -137402271 - L2 LINE L2 0 3313 3180 613 327 118 35 chrX 25197772 25198228 -137401702 - HAL1 LINE L1 -395 2112 1619 22 35 0 0 chrX 25198301 25198330 -137401600 + AT_rich Low_complexity Low_complexity 1 29 0 1012 240 14 0 chrX 25198535 25198743 -137401187 - MER58A DNA MER1_type -1 223 13 356 304 40 76 chrX 25199062 25199365 -137400565 - HAL1 LINE L1 -2214 293 2 37 39 0 0 chrX 25199761 25199812 -137400118 + AT_rich Low_complexity Low_complexity 1 51 0 2509 60 0 0 chrX 25199837 25200136 -137399794 + AluY SINE Alu 1 299 -12 24 32 0 0 chrX 25200153 25200184 -137399746 + AT_rich Low_complexity Low_complexity 1 31 0 2883 100 200 45 chrX 25200616 25201165 -137398765 + MER51A LTR ERV1 1 634 0 275 284 0 15 chrX 25201315 25201382 -137398548 + L2 LINE L2 3238 3303 -10 2356 71 0 0 chrX 25201521 25201855 -137398075 - AluSg SINE Alu 0 334 1 2346 98 3 16 chrX 25203415 25203732 -137396198 - AluSp SINE Alu 0 313 1 1955 134 0 29 chrX 25203997 25204311 -137395619 - AluSx SINE Alu -7 305 1 225 140 140 0 chrX 25205400 25205450 -137394480 + L1ME1 LINE L1 3644 3700 -2446 1705 153 25 53 chrX 25205450 25205770 -137394160 + AluJb SINE Alu 1 311 -1 1758 247 26 31 chrX 25205779 25206362 -137393568 + L1ME1 LINE L1 3673 4252 -1894 1741 162 19 44 chrX 25206365 25206680 -137393250 - AluJo SINE Alu -3 309 3 234 0 0 0 chrX 25206783 25206809 -137393121 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 301 223 0 43 chrX 25206815 25206909 -137393021 - L1M LINE L1 -941 5403 5314 * 662 130 106 0 chrX 25206899 25207022 -137392908 - L1MC3 LINE L1 -1 7784 7649 1670 219 27 58 chrX 25207034 25207492 -137392438 + L1ME1 LINE L1 5637 6108 -58 1611 144 24 48 chrX 25207492 25207867 -137392063 + L1MA7 LINE L1 5925 6290 -1 1670 219 27 58 chrX 25207867 25207892 -137392038 + L1ME1 LINE L1 6108 6132 -34 2388 74 0 0 chrX 25207892 25208188 -137391742 - AluSg1 SINE Alu -13 296 1 1670 219 27 58 chrX 25208188 25208250 -137391680 + L1ME1 LINE L1 6132 6166 0 209 380 36 22 chrX 25208307 25208444 -137391486 - L2 LINE L2 -181 3091 2953 255 217 0 0 chrX 25208656 25208702 -137391228 - MLT1K LTR MaLR -5 583 538 35 0 0 0 chrX 25208726 25208761 -137391169 + AT_rich Low_complexity Low_complexity 1 35 0 489 304 134 0 chrX 25209037 25209231 -137390699 - MLT1K LTR MaLR -235 353 134 2071 104 7 20 chrX 25209282 25209580 -137390350 - AluSx SINE Alu -18 294 1 21 95 0 0 chrX 25209654 25209717 -137390213 + AT_rich Low_complexity Low_complexity 1 63 0 232 361 113 45 chrX 25210302 25210880 -137389050 + L2 LINE L2 2082 2700 -609 3137 51 44 0 chrX 25210880 25211289 -137388641 + L1PA8 LINE L1 5743 6169 -3 833 259 148 33 chrX 25211758 25212226 -137387704 - MLT1G1 LTR MaLR 0 595 14 890 251 94 15 chrX 25212732 25213190 -137386740 + L1ME3A LINE L1 2115 2573 -3642 531 263 31 66 chrX 25213295 25213523 -137386407 + LTR16A LTR ERVL 115 334 -116 512 155 78 0 chrX 25213549 25213652 -137386278 - L1MA9 LINE L1 -22 6290 6180 1372 143 23 26 chrX 25213655 25213920 -137386010 - L1MA9 LINE L1 -232 6080 5817 577 299 30 23 chrX 25214011 25214312 -137385618 + L1ME3A LINE L1 2686 2988 -3227 * 2175 248 52 55 chrX 25214289 25215083 -137384847 + L1ME3A LINE L1 5381 6171 -68 627 248 57 34 chrX 25215493 25215556 -137384374 - LTR50 LTR ERVL 0 795 735 2088 104 25 0 chrX 25215556 25215836 -137384094 + AluSq SINE Alu 1 287 -26 627 248 57 34 chrX 25215836 25216034 -137383896 - LTR50 LTR ERVL -60 735 528 519 216 50 106 chrX 25216055 25216254 -137383676 - LTR50 LTR ERVL -607 188 1 1375 254 22 6 chrX 25217311 25217626 -137382304 + LTR40b LTR ERVL 1 320 -142 1292 196 7 29 chrX 25217635 25217911 -137382019 - MLT1D LTR MaLR -2 503 234 518 277 0 0 chrX 25217979 25218091 -137381839 - MLT1D LTR MaLR -411 215 104 * 526 144 124 0 chrX 25218081 25218178 -137381752 + LTR40a LTR ERVL 409 517 -2 300 301 66 49 chrX 25218440 25218623 -137381307 - MER5A DNA MER1_type 0 189 4 1905 136 0 37 chrX 25218736 25219060 -137380870 + AluJo SINE Alu 1 312 0 490 204 76 15 chrX 25220177 25220309 -137379621 + MER91C DNA MER1_type 1 140 0 369 318 27 9 chrX 25221042 25221152 -137378778 + L2 LINE L2 3202 3313 0 279 54 0 0 chrX 25223131 25223168 -137376762 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 180 352 0 0 chrX 25223320 25223374 -137376556 + MIR3 SINE MIR 108 161 -47 205 218 36 0 chrX 25223688 25223743 -137376187 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 * 214 200 0 0 chrX 25223707 25223747 -137376183 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 80 0 0 chrX 25223747 25223772 -137376158 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 200 0 0 chrX 25223779 25223829 -137376101 - L1MC4 LINE L1 -1340 6702 6653 684 239 54 93 chrX 25224273 25224558 -137375372 + MLT1D LTR MaLR 6 276 -258 416 302 17 6 chrX 25224611 25224783 -137375147 - L1ME3A LINE L1 -230 5940 5767 384 77 0 0 chrX 25224831 25224883 -137375047 + (TG)n Simple_repeat Simple_repeat 2 53 0 254 247 52 0 chrX 25224896 25224993 -137374937 - L1M4c LINE L1 -5021 1363 1262 936 217 107 8 chrX 25225037 25225281 -137374649 - MLT1A1 LTR MaLR -97 268 1 9830 183 56 81 chrX 25225282 25227079 -137372851 - L1MCa LINE L1 -2521 3905 2065 2705 70 6 0 chrX 25227079 25227431 -137372499 + L1PA7 LINE L1 5794 6154 0 9830 183 56 81 chrX 25227431 25227458 -137372472 - L1MCa LINE L1 -4361 2065 2039 2180 104 3 3 chrX 25227458 25227767 -137372163 + AluSx SINE Alu 1 309 -3 9830 183 56 81 chrX 25227767 25227940 -137371990 - L1MCa LINE L1 -4387 2039 1863 1133 175 63 5 chrX 25227940 25228163 -137371767 - MER46A DNA MER2_type 0 236 1 9830 183 56 81 chrX 25228163 25229393 -137370537 - L1MCa LINE L1 -4563 1863 798 366 61 0 0 chrX 25229393 25229442 -137370488 + (TG)n Simple_repeat Simple_repeat 2 50 0 9830 183 56 81 chrX 25229442 25230198 -137369732 - L1MCa LINE L1 -5628 798 25 208 338 14 0 chrX 25232352 25232423 -137367507 + MIR SINE MIR 117 188 -74 24 0 0 0 chrX 25233427 25233451 -137366479 + AT_rich Low_complexity Low_complexity 1 24 0 933 321 105 34 chrX 25233872 25234526 -137365404 + L2 LINE L2 2590 3313 0 825 276 142 20 chrX 25235963 25236553 -137363377 + L1ME3A LINE L1 5289 5951 -216 26 0 0 0 chrX 25236778 25236804 -137363126 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chrX 25236884 25236933 -137362997 + AT_rich Low_complexity Low_complexity 1 49 0 241 311 163 15 chrX 25236982 25237117 -137362813 - MIR3 SINE MIR -13 195 41 24 32 0 0 chrX 25238801 25238832 -137361098 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 25239059 25239080 -137360850 + AT_rich Low_complexity Low_complexity 1 21 0 194 305 51 34 chrX 25239687 25239805 -137360125 - L2 LINE L2 -3 3310 3191 212 260 0 20 chrX 25241014 25241064 -137358866 - L2 LINE L2 -61 3211 3163 1570 206 65 5 chrX 25241201 25241570 -137358360 - L1MB7 LINE L1 -9 6175 5785 21 57 0 0 chrX 25241640 25241675 -137358255 + AT_rich Low_complexity Low_complexity 1 35 0 248 330 19 9 chrX 25241800 25241906 -137358024 - MIR SINE MIR -5 257 151 464 270 48 0 chrX 25241907 25242033 -137357897 + MIR SINE MIR 30 161 -101 195 303 172 10 chrX 25242092 25242191 -137357739 - MIR SINE MIR -84 178 64 469 187 22 0 chrX 25242916 25243007 -137356923 - L1MC2 LINE L1 -9 6335 6243 2110 89 3 3 chrX 25243267 25243578 -137356352 + AluSp SINE Alu 1 311 0 6537 110 43 6 chrX 25243812 25245032 -137354898 + L1MA2 LINE L1 5039 6304 0 23 54 0 0 chrX 25245287 25245324 -137354606 + AT_rich Low_complexity Low_complexity 1 37 0 306 223 109 80 chrX 25245467 25245642 -137354288 + L1ME3A LINE L1 2396 2575 -3965 1688 312 102 37 chrX 25245681 25248208 -137351722 + L1ME3A LINE L1 2661 5352 -1188 490 325 49 42 chrX 25248518 25249091 -137350839 + L1ME3A LINE L1 5687 6263 -301 1969 207 52 12 chrX 25249314 25249812 -137350118 - L1 LINE L1 -1599 4547 4030 * 3856 184 23 29 chrX 25249805 25250418 -137349512 + L1MB1 LINE L1 5603 6218 -344 2252 71 41 0 chrX 25250418 25250712 -137349218 - AluYa5 SINE Alu -5 306 1 3856 184 23 29 chrX 25250712 25250937 -137348993 + L1MB1 LINE L1 6218 6438 -124 2171 131 0 0 chrX 25250937 25251249 -137348681 - AluSx SINE Alu 0 312 1 3856 184 23 29 chrX 25251249 25251282 -137348648 + L1MB1 LINE L1 6438 6470 -92 1368 83 14 42 chrX 25251278 25251515 -137348415 + L1PA10 LINE L1 5938 6168 0 * 1148 161 13 101 chrX 25251519 25251817 -137348113 + L1MA10 LINE L1 6060 6331 -3 15382 116 26 12 chrX 25251878 25254263 -137345667 + Tigger1 DNA MER2_type 1 2418 0 589 292 94 29 chrX 25254798 25255075 -137344855 + LTR33A LTR ERVL 1 295 -228 1010 165 34 11 chrX 25255335 25255511 -137344419 - L1M3e LINE L1 -6844 186 7 248 325 65 16 chrX 25255656 25255779 -137344151 - MIR SINE MIR -24 238 110 3272 209 41 19 chrX 25256219 25257050 -137342880 + L1MB7 LINE L1 4142 4990 -1156 581 282 104 32 chrX 25257358 25257667 -137342263 + MLT1H LTR MaLR 219 549 0 3863 184 31 11 chrX 25257671 25258765 -137341165 + L1MB7 LINE L1 4930 6046 -138 776 294 84 3 chrX 25259564 25259863 -137340067 - MER20B DNA MER1_type -405 378 56 477 160 52 3 chrX 25259958 25260294 -137339636 + (TA)n Simple_repeat Simple_repeat 1 352 0 324 176 55 0 chrX 25260360 25260525 -137339405 + (TA)n Simple_repeat Simple_repeat 1 174 0 253 188 29 0 chrX 25260591 25260660 -137339270 + (TA)n Simple_repeat Simple_repeat 1 71 0 200 176 0 39 chrX 25260870 25260921 -137339009 + (TA)n Simple_repeat Simple_repeat 2 50 0 405 0 0 0 chrX 25261027 25261072 -137338858 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 26 30 0 0 chrX 25261081 25261114 -137338816 + AT_rich Low_complexity Low_complexity 1 33 0 230 214 154 17 chrX 25261383 25261500 -137338430 - L1ME4a LINE L1 -18 6103 5971 1565 189 145 22 chrX 25261641 25261677 -137338253 - MLT2D LTR ERVL -4 410 380 684 24 0 0 chrX 25261677 25261759 -137338171 + (TG)n Simple_repeat Simple_repeat 2 83 0 1565 189 145 22 chrX 25261759 25262087 -137337843 - MLT2D LTR ERVL -34 380 1 2007 157 21 0 chrX 25262340 25262717 -137337213 + L1 LINE L1 4462 4846 -1300 6050 130 24 3 chrX 25262723 25263829 -137336101 + L1PA16 LINE L1 5032 6166 0 27 0 0 0 chrX 25264531 25264558 -137335372 + AT_rich Low_complexity Low_complexity 1 27 0 2006 187 40 20 chrX 25265185 25265634 -137334296 - L1MC4 LINE L1 -143 7899 7442 463 343 91 0 chrX 25266143 25266341 -137333589 + MIR SINE MIR 18 233 -29 184 246 115 33 chrX 25266369 25266430 -137333500 + MIR SINE MIR 42 107 -155 246 32 0 0 chrX 25266699 25266730 -137333200 + (TG)n Simple_repeat Simple_repeat 2 32 0 262 319 26 26 chrX 25267146 25267262 -137332668 - L3 LINE CR1 -107 1470 1355 23 78 0 0 chrX 25267401 25267452 -137332478 + AT_rich Low_complexity Low_complexity 1 51 0 188 309 10 62 chrX 25267555 25267652 -137332278 - MIR SINE MIR -76 186 95 2391 238 65 39 chrX 25268741 25269006 -137330924 - L1MCa LINE L1 -3913 2483 2227 1007 152 16 0 chrX 25269006 25269190 -137330740 - L1MA6 LINE L1 -18 6282 6096 2391 238 65 39 chrX 25269190 25269587 -137330343 - L1MCa LINE L1 -4169 2227 1842 1526 202 50 3 chrX 25269587 25269884 -137330046 - AluJb SINE Alu -1 311 1 2391 238 65 39 chrX 25269884 25270183 -137329747 - L1MCa LINE L1 -4554 1842 1307 348 148 16 0 chrX 25270184 25270197 -137329733 - MER46A DNA MER2_type -78 158 145 968 118 35 0 chrX 25270197 25270341 -137329589 + Tigger4(Zombi) DNA MER2_type 1 149 -2582 1344 146 28 32 chrX 25270344 25270597 -137329333 + Tigger4(Zombi) DNA MER2_type 2471 2722 -9 922 259 46 29 chrX 25270616 25271026 -137328904 - L1MCa LINE L1 -4923 1473 1057 1820 251 48 0 chrX 25271049 25271528 -137328402 - L1MCa LINE L1 -5410 986 485 1637 169 42 92 chrX 25271535 25271990 -137327940 - MSTB1 LTR MaLR 0 432 1 398 224 12 0 chrX 25272000 25272085 -137327845 - LTR40a LTR ERVL -4 515 430 852 261 59 33 chrX 25272090 25272335 -137327595 - LTR40b LTR ERVL -181 281 27 1927 146 46 46 chrX 25272335 25272725 -137327205 + MLT1B LTR MaLR 1 390 0 852 261 59 33 chrX 25272725 25272751 -137327179 - LTR40b LTR ERVL -435 27 3 1510 274 24 12 chrX 25272754 25273163 -137326767 - L1MCa LINE L1 -5918 478 65 526 161 8 17 chrX 25274395 25274513 -137325417 + GA-rich Low_complexity Low_complexity 4 120 0 471 247 163 18 chrX 25274543 25274709 -137325221 + MER58A DNA MER1_type 35 224 0 2237 108 0 0 chrX 25274784 25275079 -137324851 - AluSx SINE Alu -17 295 1 267 319 91 58 chrX 25275653 25275945 -137323985 + L2 LINE L2 2888 3266 -47 2167 197 13 50 chrX 25275945 25276469 -137323461 - MLT1D LTR MaLR 0 505 1 267 319 91 58 chrX 25276469 25276514 -137323416 + L2 LINE L2 3266 3308 -5 186 103 0 0 chrX 25276516 25276545 -137323385 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chrX 25276621 25276644 -137323286 + (A)n Simple_repeat Simple_repeat 1 23 0 849 270 0 0 chrX 25276797 25276971 -137322959 - MER5A DNA MER1_type 0 189 16 326 350 76 32 chrX 25277015 25277172 -137322758 + MIR SINE MIR 20 183 -79 42440 32 22 1 chrX 25277677 25283675 -137316255 - L1PA2 LINE L1 -2 6153 26 973 243 40 97 chrX 25284151 25284625 -137315305 + LTR16A1 LTR ERVL 3 449 -8 244 333 18 18 chrX 25285083 25285197 -137314733 + L1ME3A LINE L1 5965 6078 -92 243 300 136 7 chrX 25285441 25285581 -137314349 - L1M4 LINE L1 -1981 4165 4008 682 307 38 71 chrX 25285744 25286349 -137313581 - L1MEd LINE L1 -5213 906 322 25 0 0 0 chrX 25286515 25286540 -137313390 + AT_rich Low_complexity Low_complexity 1 25 0 219 286 48 0 chrX 25287143 25287206 -137312724 + MIR SINE MIR 147 212 -50 345 273 50 50 chrX 25287307 25287446 -137312484 + L2 LINE L2 3173 3311 -2 201 343 0 0 chrX 25287627 25287700 -137312230 + MIR3 SINE MIR 125 197 -11 21 0 0 0 chrX 25289334 25289355 -137310575 + AT_rich Low_complexity Low_complexity 1 21 0 1048 131 0 36 chrX 25290317 25290485 -137309445 - AluSg/x SINE Alu -20 292 131 398 257 125 0 chrX 25290526 25290662 -137309268 + Charlie7 DNA MER1_type 5 157 -2455 2133 119 27 0 chrX 25290752 25291047 -137308883 - AluSx SINE Alu -9 303 1 524 371 38 4 chrX 25291052 25291289 -137308641 + LTR33 LTR ERVL 21 265 -256 1862 162 14 0 chrX 25291290 25291586 -137308344 + AluJb SINE Alu 1 300 -12 385 191 0 27 chrX 25291611 25291637 -137308293 + GA-rich Low_complexity Low_complexity 4 29 -81 2325 93 6 3 chrX 25291637 25291948 -137307982 + AluSq SINE Alu 1 312 -1 385 191 0 27 chrX 25291948 25292031 -137307899 + GA-rich Low_complexity Low_complexity 29 110 0 2699 216 30 16 chrX 25292146 25292841 -137307089 + L1M4 LINE L1 3588 4292 -1854 21 0 0 0 chrX 25293130 25293151 -137306779 + AT_rich Low_complexity Low_complexity 1 21 0 263 215 0 46 chrX 25293177 25293242 -137306688 + MLT1J LTR MaLR 3 64 -447 1740 169 23 10 chrX 25293258 25293565 -137306365 - AluJb SINE Alu -1 311 1 364 339 83 16 chrX 25293600 25293792 -137306138 + MLT1J LTR MaLR 240 444 -67 883 274 71 62 chrX 25294677 25295112 -137304818 + MLT1J LTR MaLR 9 447 -64 294 327 100 35 chrX 25295142 25295680 -137304250 - L1MEc LINE L1 -4589 2018 1446 363 275 70 47 chrX 25295764 25296095 -137303835 - L1MEc LINE L1 -5204 1399 887 239 154 15 31 chrX 25296162 25296227 -137303703 + (TA)n Simple_repeat Simple_repeat 2 65 0 626 112 95 9 chrX 25296227 25296343 -137303587 - L1MC2 LINE L1 -10 6334 6209 189 0 0 0 chrX 25296403 25296424 -137303506 + (CA)n Simple_repeat Simple_repeat 1 21 0 3577 152 12 43 chrX 25296591 25296842 -137303088 + L1M1 LINE L1 4543 4800 -1504 414 187 76 40 chrX 25296842 25296990 -137302940 + LTR19C LTR ERV1 39 227 -552 3577 152 12 43 chrX 25296990 25297922 -137302008 + L1M1 LINE L1 4800 5736 -568 1697 220 132 78 chrX 25297922 25298655 -137301275 - LTR19C LTR ERV1 0 779 7 3762 84 10 29 chrX 25298661 25299242 -137300688 + L1MA1 LINE L1 5733 6302 0 245 325 18 0 chrX 25299423 25299537 -137300393 + L1M4 LINE L1 4460 4575 -1571 268 377 57 0 chrX 25299631 25299737 -137300193 - L2 LINE L2 0 3272 3161 2318 93 3 3 chrX 25299792 25300094 -137299836 + AluSc SINE Alu 1 302 -7 343 289 111 54 chrX 25300346 25300661 -137299269 + L1M4 LINE L1 4933 5265 -881 23 33 0 0 chrX 25300773 25300803 -137299127 + AT_rich Low_complexity Low_complexity 1 30 0 192 226 0 0 chrX 25300833 25300895 -137299035 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1656 219 99 38 chrX 25301485 25301961 -137297969 + MLT1D LTR MaLR 1 505 0 35 41 0 0 chrX 25303139 25303188 -137296742 + AT_rich Low_complexity Low_complexity 1 49 0 1470 287 83 21 chrX 25303516 25304073 -137295857 - MLT1E LTR MaLR 0 593 3 1196 174 39 130 chrX 25304300 25304709 -137295221 - MLT1A2 LTR MaLR -2 372 1 512 304 99 20 chrX 25304963 25305164 -137294766 + L2 LINE L2 3096 3312 -1 32 0 0 0 chrX 25305193 25305225 -137294705 + AT_rich Low_complexity Low_complexity 1 32 0 2750 231 83 42 chrX 25305315 25306102 -137293828 + MER21B LTR ERV1 20 838 -25 28 29 0 0 chrX 25306190 25306225 -137293705 + AT_rich Low_complexity Low_complexity 1 35 0 1765 226 128 15 chrX 25307056 25307596 -137292334 - MER77 LTR ERV1 -4 601 1 327 276 29 98 chrX 25308172 25308285 -137291645 - MLT1J LTR MaLR -52 459 371 2222 99 0 34 chrX 25308285 25308607 -137291323 - AluSx SINE Alu -1 311 1 327 276 29 98 chrX 25308607 25308739 -137291191 - MLT1J LTR MaLR -140 371 231 593 268 71 25 chrX 25308950 25309305 -137290625 - L1MC4a LINE L1 -158 5963 5588 431 228 54 0 chrX 25309644 25309736 -137290194 - MER5A DNA MER1_type -84 105 9 1533 194 70 141 chrX 25310152 25310740 -137289190 - MLT1E1 LTR MaLR -108 546 1 3210 148 34 37 chrX 25310853 25311497 -137288433 + L1MA7 LINE L1 5650 6291 0 29 0 0 0 chrX 25311520 25311549 -137288381 + AT_rich Low_complexity Low_complexity 1 29 0 9446 247 50 59 chrX 25311553 25314906 -137285024 + L1PB4 LINE L1 2 3384 -3474 2000 109 39 0 chrX 25314906 25315189 -137284741 + AluSq SINE Alu 3 296 -17 9446 247 50 59 chrX 25315189 25318523 -137281407 + L1PB4 LINE L1 3384 6490 -368 390 57 0 0 chrX 25318523 25318576 -137281354 + (CA)n Simple_repeat Simple_repeat 2 54 0 9446 247 50 59 chrX 25318576 25318942 -137280988 + L1PB4 LINE L1 6490 6858 0 25 31 0 0 chrX 25319319 25319351 -137280579 + AT_rich Low_complexity Low_complexity 1 32 0 240 380 35 31 chrX 25319497 25319723 -137280207 + L3 LINE CR1 1332 1558 -19 207 313 40 81 chrX 25320864 25320963 -137278967 + L2 LINE L2 3143 3237 -35 293 303 25 33 chrX 25321379 25321501 -137278429 - MIR SINE MIR -139 123 3 23 33 0 0 chrX 25322164 25322194 -137277736 + AT_rich Low_complexity Low_complexity 1 30 0 364 190 35 58 chrX 25322529 25322703 -137277227 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 1469 58 0 16 chrX 25324268 25324456 -137275474 + AluY SINE Alu 123 307 -4 336 276 54 20 chrX 25325024 25325227 -137274703 + L1MD3 LINE L1 2268 2477 -3669 658 234 13 57 chrX 25325416 25325643 -137274287 - L1M4 LINE L1 -2140 4006 3790 2451 51 0 0 chrX 25325799 25326093 -137273837 + AluY SINE Alu 1 294 -17 22 56 0 0 chrX 25326153 25326189 -137273741 + AT_rich Low_complexity Low_complexity 1 36 0 547 292 121 8 chrX 25326722 25327102 -137272828 + L1MD3 LINE L1 3579 4001 -2145 1436 115 0 10 chrX 25327162 25327371 -137272559 - AluSg/x SINE Alu -6 304 98 708 301 65 24 chrX 25327385 25327844 -137272086 + L1MD3 LINE L1 4067 4544 -1602 1403 116 39 0 chrX 25327897 25328129 -137271801 + L1MA4 LINE L1 6056 6296 -4 600 234 83 99 chrX 25328138 25328714 -137271216 + L1MC4 LINE L1 7459 8025 -17 359 65 0 0 chrX 25328770 25328816 -137271114 - L1MA3 LINE L1 -474 5831 5786 435 302 128 21 chrX 25328887 25329455 -137270475 + L1MD3 LINE L1 5273 5862 -300 202 169 0 34 chrX 25329462 25329521 -137270409 + (TA)n Simple_repeat Simple_repeat 1 57 0 369 289 34 73 chrX 25330533 25330737 -137269193 - MLT1H LTR MaLR -147 402 207 184 259 139 65 chrX 25331106 25331214 -137268716 + L2 LINE L2 3180 3295 -18 910 206 0 11 chrX 25331476 25331651 -137268279 + MER5B DNA MER1_type 1 173 -5 279 0 0 0 chrX 25333256 25333287 -137266643 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 5352 36 2 0 chrX 25333287 25333927 -137266003 - L1PA5 LINE L1 -15 6139 5499 207 167 0 0 chrX 25334074 25334116 -137265814 + (TA)n Simple_repeat Simple_repeat 2 43 0 305 235 35 87 chrX 25334217 25334332 -137265598 - MIR SINE MIR -35 227 119 181 406 0 0 chrX 25334417 25334481 -137265449 - MIR SINE MIR -196 66 3 28 61 0 0 chrX 25335781 25335830 -137264100 + AT_rich Low_complexity Low_complexity 1 49 0 5006 142 22 39 chrX 25336270 25337095 -137262835 - L1PB4 LINE L1 -7 6149 5333 1830 162 0 13 chrX 25337095 25337409 -137262521 - AluJo SINE Alu 0 312 3 5006 142 22 39 chrX 25337409 25337591 -137262339 - L1PB4 LINE L1 -823 5333 5149 258 250 125 0 chrX 25337619 25337675 -137262255 - MER31-int LTR ERV1 -1019 3917 3855 1690 103 45 8 chrX 25337716 25337959 -137261971 + AluSx SINE Alu 52 303 -9 918 113 0 8 chrX 25337963 25338096 -137261834 + L1P LINE L1 11 142 -6004 20998 40 2 1 chrX 25338293 25341695 -137258235 + L1PA5 LINE L1 2745 6152 -2 577 266 65 67 chrX 25341718 25342135 -137257795 - MER31-int LTR ERV1 -1121 3815 3400 1600 148 13 43 chrX 25342210 25342514 -137257416 + AluJo SINE Alu 1 295 -17 346 229 57 105 chrX 25342829 25343039 -137256891 - MER31-int LTR ERV1 -1919 3017 2818 285 237 15 46 chrX 25343134 25343265 -137256665 - MER31-int LTR ERV1 -2185 2751 2625 232 236 0 36 chrX 25344171 25344226 -137255704 + MER34 LTR ERV1 70 122 -420 * 2086 187 58 12 chrX 25344204 25344631 -137255299 + MER39 LTR ERV1 261 707 0 654 236 61 34 chrX 25345835 25346098 -137253832 - LTR37B LTR ERV1 -1 467 198 775 184 164 10 chrX 25346966 25347049 -137252881 + MER44D DNA MER2_type 1 70 -2421 180 0 0 0 chrX 25347049 25347069 -137252861 + (GA)n Simple_repeat Simple_repeat 1 20 0 775 184 164 10 chrX 25347069 25347192 -137252738 + MER44D DNA MER2_type 70 509 -100 234 286 41 0 chrX 25347192 25347290 -137252640 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 446 218 35 0 chrX 25347310 25347397 -137252533 + MER44D DNA MER2_type 598 687 -18 2778 237 165 46 chrX 25347804 25348779 -137251151 + L1MD2 LINE L1 18 1108 -5432 * 5549 225 31 83 chrX 25348764 25350059 -137249871 + L1MD2 LINE L1 3433 4794 -1842 1656 112 134 11 chrX 25350059 25350327 -137249603 + AluSx SINE Alu 2 302 0 5549 225 31 83 chrX 25350327 25350776 -137249154 + L1MD2 LINE L1 4794 5265 -1371 1994 52 0 0 chrX 25350776 25351026 -137248904 - L1PA5 LINE L1 0 6154 5905 5549 225 31 83 chrX 25351026 25351381 -137248549 + L1MD2 LINE L1 5265 5637 -999 1591 174 7 27 chrX 25351381 25351675 -137248255 + AluJo SINE Alu 1 288 -24 5549 225 31 83 chrX 25351675 25352944 -137246986 + L1MD2 LINE L1 5637 6621 -15 1336 181 76 32 chrX 25352945 25353222 -137246708 - AluJo SINE Alu -21 291 3 29 0 0 0 chrX 25353360 25353389 -137246541 + AT_rich Low_complexity Low_complexity 1 29 0 268 302 109 33 chrX 25353416 25353691 -137246239 + HAL1b LINE L1 279 574 -774 1594 208 56 0 chrX 25353819 25354160 -137245770 - MER90 LTR ERV1 -215 360 1 454 253 0 0 chrX 25354723 25354822 -137245108 - MER94 DNA DNA -34 100 2 2223 104 3 3 chrX 25354965 25355262 -137244668 + AluSg SINE Alu 1 297 -13 24 32 0 0 chrX 25355593 25355624 -137244306 + AT_rich Low_complexity Low_complexity 1 31 0 391 173 48 10 chrX 25355624 25355728 -137244202 + L1MA7 LINE L1 6183 6290 -1 413 263 97 70 chrX 25356107 25356520 -137243410 + L1MC/D LINE L1 4282 4705 -1441 30 0 0 0 chrX 25356714 25356744 -137243186 + AT_rich Low_complexity Low_complexity 1 30 0 2225 88 0 36 chrX 25356799 25357106 -137242824 + AluSx SINE Alu 1 296 -16 356 350 47 28 chrX 25357198 25357518 -137242412 + L1MC/D LINE L1 5494 5819 -1989 24 32 0 0 chrX 25357787 25357818 -137242112 + AT_rich Low_complexity Low_complexity 1 31 0 1090 135 0 24 chrX 25357892 25358062 -137241868 - AluSg/x SINE Alu -12 300 135 1469 164 4 0 chrX 25358249 25358505 -137241425 - L1P LINE L1 -1085 5061 4805 * 1507 132 4 0 chrX 25358495 25358738 -137241192 + L1P LINE L1 5057 5300 -846 6609 83 10 0 chrX 25358738 25359707 -137240223 + L1PA11 LINE L1 5197 6174 0 2185 171 81 38 chrX 25360031 25360511 -137239419 + MLT1D LTR MaLR 5 505 0 1507 162 68 145 chrX 25360677 25361234 -137238696 - MER67D LTR ERV1 0 514 1 27 0 0 0 chrX 25361894 25361921 -137238009 + AT_rich Low_complexity Low_complexity 1 27 0 304 235 0 41 chrX 25362628 25362726 -137237204 + HsTC2 DNA Tc2 1 94 -1804 180 0 0 0 chrX 25363111 25363131 -137236799 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chrX 25364431 25364452 -137235478 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 272 318 25 60 chrX 25364609 25364810 -137235120 + HAL1 LINE L1 1259 1452 -1055 327 311 72 62 chrX 25365013 25365318 -137234612 + HAL1b LINE L1 434 741 -607 7234 127 19 24 chrX 25365515 25366232 -137233698 + Tigger3b DNA MER2_type 1 721 -2307 1536 191 17 17 chrX 25366232 25366526 -137233404 + AluJo SINE Alu 1 294 -18 7234 127 19 24 chrX 25366526 25366755 -137233175 + Tigger3b DNA MER2_type 721 950 -2078 2362 88 0 10 chrX 25366755 25367061 -137232869 - AluSq SINE Alu -10 303 1 7234 127 19 24 chrX 25367061 25367351 -137232579 + Tigger3b DNA MER2_type 950 1231 0 21 0 0 0 chrX 25367491 25367512 -137232418 + AT_rich Low_complexity Low_complexity 1 21 0 1780 269 109 60 chrX 25367544 25368883 -137231047 + HAL1 LINE L1 47 1451 -1056 237 267 0 17 chrX 25369137 25369227 -137230703 + G-rich Low_complexity Low_complexity 1 88 0 338 302 94 5 chrX 25369359 25369551 -137230379 + HAL1 LINE L1 1439 1647 -860 190 306 0 0 chrX 25369645 25369694 -137230236 + L2 LINE L2 3262 3310 -3 25 0 0 0 chrX 25370383 25370408 -137229522 + AT_rich Low_complexity Low_complexity 1 25 0 273 377 37 19 chrX 25370592 25370807 -137229123 - MLT1K LTR MaLR -239 349 131 891 311 113 6 chrX 25370842 25371170 -137228760 - LTR16A LTR ERVL -17 433 71 240 278 33 22 chrX 25371276 25371366 -137228564 + C-rich Low_complexity Low_complexity 6 96 0 * 282 269 0 51 chrX 25371301 25371476 -137228454 + CT-rich Low_complexity Low_complexity 2 167 0 898 191 38 0 chrX 25371957 25372114 -137227816 - MER45A DNA AcHobo -4 174 12 2175 188 105 11 chrX 25372339 25372797 -137227133 - MLT1D LTR MaLR -4 501 1 583 184 40 16 chrX 25375834 25375959 -137223971 - MER63 DNA MER1_type -82 754 1 194 268 0 0 chrX 25375998 25376039 -137223891 + MIR SINE MIR 12 52 -210 185 352 0 0 chrX 25376044 25376115 -137223815 + MIR SINE MIR 189 259 -3 340 344 88 25 chrX 25376196 25376513 -137223417 + L2 LINE L2 2612 2948 -366 450 246 80 60 chrX 25377083 25377282 -137222648 - MIR SINE MIR -4 258 56 241 228 0 18 chrX 25377623 25377680 -137222250 - L1ME LINE L1 -307 5814 5759 24 0 0 0 chrX 25378481 25378505 -137221425 + AT_rich Low_complexity Low_complexity 1 24 0 187 349 15 0 chrX 25378948 25379014 -137220916 + MIR SINE MIR 2 68 -194 181 385 0 0 chrX 25379052 25379135 -137220795 - MIR SINE MIR -110 152 70 323 244 231 27 chrX 25379596 25379753 -137220177 + MIR3 SINE MIR 5 187 -21 24 0 0 0 chrX 25381020 25381044 -137218886 + AT_rich Low_complexity Low_complexity 1 24 0 2430 161 39 2 chrX 25381492 25381903 -137218027 + MSTB LTR MaLR 1 426 0 28 29 0 0 chrX 25382223 25382258 -137217672 + AT_rich Low_complexity Low_complexity 1 35 0 182 321 99 12 chrX 25382464 25382545 -137217385 - MIR3 SINE MIR -29 179 92 386 271 279 0 chrX 25382833 25382973 -137216957 + MIR SINE MIR 84 262 0 5395 107 40 30 chrX 25383337 25384640 -137215290 + L1PA16 LINE L1 4842 6157 -9 21 0 0 0 chrX 25384640 25384661 -137215269 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chrX 25384973 25385004 -137214926 + AT_rich Low_complexity Low_complexity 1 31 0 923 184 17 2 chrX 25485327 25485763 -137114167 - ALR/Alpha Satellite centromeric 0 442 1 1195 175 6 1 chrX 25485774 25487629 -137112301 - ALR/Alpha Satellite centromeric 0 1864 1 1213 167 7 2 chrX 25487640 25489495 -137110435 - ALR/Alpha Satellite centromeric 0 1864 1 1190 172 8 2 chrX 25489506 25493210 -137106720 - ALR/Alpha Satellite centromeric 0 3724 1 1111 187 6 1 chrX 25493310 25495239 -137104691 + ALR/Alpha Satellite centromeric 1 1937 -14 1217 180 7 2 chrX 25495250 25498970 -137100960 + ALR/Alpha Satellite centromeric 1 3740 -14 1179 182 5 1 chrX 25498981 25500836 -137099094 + ALR/Alpha Satellite centromeric 1 1862 -14 1169 166 6 1 chrX 25500847 25502191 -137097739 + ALR/Alpha Satellite centromeric 1 1350 -14 866 191 18 0 chrX 25502202 25502370 -137097560 + ALR/Alpha Satellite centromeric 1 171 0 1223 167 7 1 chrX 25502475 25504454 -137095476 - ALR/Alpha Satellite centromeric 0 1990 1 1230 165 7 1 chrX 25504465 25506320 -137093610 - ALR/Alpha Satellite centromeric 0 1865 1 1230 164 8 3 chrX 25506331 25508186 -137091744 - ALR/Alpha Satellite centromeric 0 1865 1 1201 168 6 1 chrX 25508197 25510052 -137089878 - ALR/Alpha Satellite centromeric 0 1864 1 1178 168 7 1 chrX 25510063 25511917 -137088013 - ALR/Alpha Satellite centromeric 0 1865 1 918 214 7 2 chrX 25511930 25512668 -137087262 - ALR/Alpha Satellite centromeric 0 741 1 1230 163 7 2 chrX 25512768 25514485 -137085445 - ALR/Alpha Satellite centromeric 0 1726 1 1216 165 8 3 chrX 25514496 25516351 -137083579 - ALR/Alpha Satellite centromeric 0 1865 1 1230 167 8 3 chrX 25516362 25518217 -137081713 - ALR/Alpha Satellite centromeric 0 1864 1 1213 169 6 1 chrX 25518228 25520083 -137079847 - ALR/Alpha Satellite centromeric 0 1864 1 1160 170 7 1 chrX 25520094 25521949 -137077981 - ALR/Alpha Satellite centromeric 0 1865 1 1201 166 7 1 chrX 25521960 25523815 -137076115 - ALR/Alpha Satellite centromeric 0 1864 1 1255 172 6 1 chrX 25523826 25525680 -137074250 - ALR/Alpha Satellite centromeric 0 1864 1 1130 170 7 1 chrX 25525691 25527546 -137072384 - ALR/Alpha Satellite centromeric 0 1865 1 1255 166 6 1 chrX 25527557 25529412 -137070518 - ALR/Alpha Satellite centromeric 0 1864 1 1203 169 6 1 chrX 25529423 25531278 -137068652 - ALR/Alpha Satellite centromeric 0 1864 1 1162 174 7 2 chrX 25531289 25533142 -137066788 - ALR/Alpha Satellite centromeric 0 1862 1 1195 174 9 2 chrX 25533153 25535117 -137064813 - ALR/Alpha Satellite centromeric -14 1977 1 3249 31 5 0 chrX 25535117 25535500 -137064430 + L1P LINE L1 4007 4391 -1755 994 161 22 1 chrX 25535602 25536199 -137063731 - ALR/Alpha Satellite centromeric 0 609 1 1188 170 6 1 chrX 25536210 25538065 -137061865 - ALR/Alpha Satellite centromeric 0 1864 1 1197 166 6 1 chrX 25538076 25539930 -137060000 - ALR/Alpha Satellite centromeric 0 1864 1 1201 172 6 1 chrX 25539941 25543662 -137056268 - ALR/Alpha Satellite centromeric 0 3741 1 1201 169 8 2 chrX 25543673 25545527 -137054403 - ALR/Alpha Satellite centromeric 0 1863 1 1160 178 6 1 chrX 25545538 25547392 -137052538 - ALR/Alpha Satellite centromeric 0 1863 1 1209 175 6 1 chrX 25547403 25549257 -137050673 - ALR/Alpha Satellite centromeric 0 1863 1 1193 167 6 1 chrX 25549268 25551123 -137048807 - ALR/Alpha Satellite centromeric 0 1864 1 1201 167 6 1 chrX 25551134 25552989 -137046941 - ALR/Alpha Satellite centromeric 0 1864 1 1217 168 6 1 chrX 25553000 25554855 -137045075 - ALR/Alpha Satellite centromeric 0 1864 1 1201 165 7 2 chrX 25554866 25556721 -137043209 - ALR/Alpha Satellite centromeric 0 1863 1 1140 175 2 2 chrX 25556732 25558183 -137041747 - ALR/Alpha Satellite centromeric 0 1450 1 1244 157 8 2 chrX 25558296 25562540 -137037390 - ALR/Alpha Satellite centromeric 0 4269 1 943 172 12 4 chrX 25562552 25563156 -137036774 - ALR/Alpha Satellite centromeric 0 608 1 1216 166 6 1 chrX 25563178 25565210 -137034720 - ALR/Alpha Satellite centromeric 0 2043 1 1198 172 9 2 chrX 25565221 25567079 -137032851 - ALR/Alpha Satellite centromeric 0 1870 1 1168 164 8 2 chrX 25567090 25569212 -137030718 - ALR/Alpha Satellite centromeric 0 2134 1 1207 165 7 1 chrX 25569223 25571346 -137028584 - ALR/Alpha Satellite centromeric 0 2134 1 1204 173 9 2 chrX 25571357 25575752 -137024178 - ALR/Alpha Satellite centromeric 0 4424 1 1186 175 6 1 chrX 25575763 25579483 -137020447 - ALR/Alpha Satellite centromeric 0 3740 1 1217 169 6 1 chrX 25579494 25581348 -137018582 - ALR/Alpha Satellite centromeric 0 1863 1 1216 178 9 2 chrX 25581359 25583487 -137016443 - ALR/Alpha Satellite centromeric 0 2143 1 8475 32 0 0 chrX 25583589 25585374 -137014556 + L1HS LINE L1 4370 6155 0 1286 162 7 0 chrX 25585376 25587147 -137012783 - ALR/Alpha Satellite centromeric 0 1782 1 1410 143 4 1 chrX 25587158 25595835 -137004095 + ALR/Alpha Satellite centromeric 1 8708 0 1387 144 3 0 chrX 25595940 25599038 -137000892 + ALR/Alpha Satellite centromeric 1 3107 -35 1217 169 6 1 chrX 25599139 25601009 -136998921 - ALR/Alpha Satellite centromeric 0 1880 1 1152 171 6 1 chrX 25601020 25602874 -136997056 - ALR/Alpha Satellite centromeric 0 1863 1 1199 167 7 1 chrX 25602885 25604740 -136995190 - ALR/Alpha Satellite centromeric 0 1864 1 1192 167 6 1 chrX 25604751 25606606 -136993324 - ALR/Alpha Satellite centromeric 0 1864 1 1186 172 7 1 chrX 25606617 25608471 -136991459 - ALR/Alpha Satellite centromeric 0 1864 1 1132 175 6 1 chrX 25608482 25610336 -136989594 - ALR/Alpha Satellite centromeric 0 1863 1 1195 171 6 1 chrX 25610347 25612202 -136987728 - ALR/Alpha Satellite centromeric 0 1864 1 1213 168 6 2 chrX 25612213 25614067 -136985863 - ALR/Alpha Satellite centromeric 0 1862 1 1164 179 7 2 chrX 25614078 25617238 -136982692 - ALR/Alpha Satellite centromeric 0 3176 1 590 144 61 23 chrX 25817423 25817555 -136782375 + L1MA8 LINE L1 6154 6290 -1 258 176 0 0 chrX 25817824 25817875 -136782055 + (ATG)n Simple_repeat Simple_repeat 3 53 0 279 71 0 0 chrX 25818204 25818246 -136781684 + (TC)n Simple_repeat Simple_repeat 2 43 0 243 0 0 0 chrX 25818249 25818276 -136781654 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chrX 25818808 25818836 -136781094 + AT_rich Low_complexity Low_complexity 1 28 0 390 284 107 20 chrX 25819355 25819552 -136780378 - Charlie8 DNA MER1_type -2177 240 27 483 314 54 25 chrX 25819792 25819996 -136779934 + MIR SINE MIR 53 262 0 1193 266 30 35 chrX 25820148 25820607 -136779323 + L1ME2 LINE L1 5699 6155 -9 4973 107 24 14 chrX 25821032 25821790 -136778140 + L1PA16 LINE L1 5399 6163 -3 2069 130 31 0 chrX 25822291 25822644 -136777286 + L1MA5 LINE L1 5935 6298 -2 4793 254 65 12 chrX 25822811 25823525 -136776405 + L1M4 LINE L1 16 690 -5852 495 33 0 0 chrX 25823525 25823586 -136776344 + (CA)n Simple_repeat Simple_repeat 2 62 0 315 0 0 0 chrX 25823585 25823620 -136776310 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 4793 254 65 12 chrX 25823586 25824280 -136775650 + L1M4 LINE L1 690 1464 -5078 4477 232 50 28 chrX 25824263 25824755 -136775175 + L1M4 LINE L1 3936 4416 -2228 * 2417 74 0 0 chrX 25824755 25825054 -136774876 + AluSg SINE Alu 1 299 -11 4477 232 50 28 chrX 25825054 25825953 -136773977 + L1M4 LINE L1 4416 5358 -1286 630 112 19 10 chrX 25825961 25826076 -136773854 + L1MA4 LINE L1 6110 6214 -86 423 183 0 12 chrX 25826064 25826146 -136773784 + L1M4 LINE L1 5345 5425 -1219 * 418 104 9 66 chrX 25826140 25826246 -136773684 + L1M LINE L1 5789 5888 -756 * 21 0 0 0 chrX 25828917 25828938 -136770992 + AT_rich Low_complexity Low_complexity 1 21 0 2210 192 103 2 chrX 25830651 25831105 -136768825 + MLT1D LTR MaLR 6 505 0 231 325 26 18 chrX 25831803 25831917 -136768013 + MIR3 SINE MIR 85 199 -9 776 239 58 10 chrX 25832154 25832359 -136767571 - MER58C DNA MER1_type 0 215 1 336 200 5 7 chrX 25833202 25833275 -136766655 + MLT1D LTR MaLR 5 65 -440 371 361 16 0 chrX 25834200 25834322 -136765608 + MIR3 SINE MIR 57 180 -28 435 38 0 0 chrX 25834592 25834645 -136765285 + (TA)n Simple_repeat Simple_repeat 2 54 0 240 35 0 0 chrX 25835451 25835480 -136764450 + (T)n Simple_repeat Simple_repeat 1 29 0 314 347 54 42 chrX 25835945 25836112 -136763818 - MIR3 SINE MIR -23 185 17 2443 226 47 43 chrX 25836315 25837040 -136762890 + MER97c DNA MER1_type? 8 735 -355 22 0 0 0 chrX 25837134 25837156 -136762774 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chrX 25837277 25837310 -136762620 + AT_rich Low_complexity Low_complexity 1 33 0 600 211 146 0 chrX 25837937 25838108 -136761822 - L1MD3 LINE L1 -8 7987 7792 1171 113 21 0 chrX 25838171 25838357 -136761573 - L1MA3 LINE L1 -3 6302 6113 21 104 0 0 chrX 25838363 25838440 -136761490 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chrX 25839323 25839345 -136760585 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chrX 25840044 25840079 -136759851 + AT_rich Low_complexity Low_complexity 1 35 0 181 244 44 22 chrX 25840280 25840325 -136759605 + L2 LINE L2 3211 3256 -16 232 250 109 33 chrX 25841972 25842064 -136757866 + MLT1H LTR MaLR 39 137 -412 596 300 6 12 chrX 25842181 25842341 -136757589 + MLT1H LTR MaLR 98 256 -293 4827 160 26 5 chrX 25843681 25844548 -136755382 - L1MC1 LINE L1 -18 6315 5430 236 365 0 37 chrX 25844563 25844670 -136755260 - L3 LINE CR1 -5 1572 1470 2362 246 99 52 chrX 25844740 25845853 -136754077 + L2 LINE L2 2112 3270 -43 3046 50 5 0 chrX 25845857 25846241 -136753689 + L1PA8 LINE L1 5785 6170 -2 31 26 0 0 chrX 25848085 25848123 -136751807 + AT_rich Low_complexity Low_complexity 1 38 0 1093 251 67 71 chrX 25848156 25848622 -136751308 + LTR16B LTR ERVL 1 464 0 370 243 63 155 chrX 25850676 25850960 -136748970 + MIR SINE MIR 5 262 0 24 0 0 0 chrX 25851112 25851136 -136748794 + AT_rich Low_complexity Low_complexity 1 24 0 398 341 243 11 chrX 25851969 25852837 -136747093 - L2 LINE L2 -467 2847 1779 2008 138 3 0 chrX 25852913 25853219 -136746711 - AluSx SINE Alu 0 307 1 23 33 0 0 chrX 25853325 25853355 -136746575 + AT_rich Low_complexity Low_complexity 1 30 0 324 56 56 0 chrX 25853416 25853470 -136746460 - L1MA1 LINE L1 0 6302 6246 2085 240 28 19 chrX 25853893 25854319 -136745611 - MER97b DNA MER1_type? -463 590 156 14313 145 25 2 chrX 25854319 25856684 -136743246 + Tigger1 DNA MER2_type 1 2418 0 2085 240 28 19 chrX 25856684 25856799 -136743131 - MER97b DNA MER1_type? -897 156 44 189 0 0 0 chrX 25857159 25857180 -136742750 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2089 94 0 4 chrX 25857180 25857456 -136742474 - AluSc SINE Alu -32 277 3 45 83 0 0 chrX 25857611 25857719 -136742211 + AT_rich Low_complexity Low_complexity 1 108 0 288 29 0 0 chrX 25857947 25857982 -136741948 + Tigger1 DNA MER2_type 2053 2087 -331 601 306 99 9 chrX 25858085 25858317 -136741613 + MIR SINE MIR 7 259 -3 21 36 0 0 chrX 25858324 25858352 -136741578 + AT_rich Low_complexity Low_complexity 1 28 0 2162 77 10 32 chrX 25858354 25858667 -136741263 - AluSq SINE Alu -7 306 1 24 0 0 0 chrX 25858900 25858924 -136741006 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 25859751 25859779 -136740151 + AT_rich Low_complexity Low_complexity 1 28 0 1950 131 7 3 chrX 25860787 25861078 -136738852 - AluSx SINE Alu -18 294 3 1017 213 0 33 chrX 25861108 25861319 -136738611 - MER58A DNA MER1_type -2 222 19 283 239 57 11 chrX 25861386 25861474 -136738456 + MIR SINE MIR 168 259 -3 3152 300 92 23 chrX 25862265 25863056 -136736874 - L2 LINE L2 -94 3219 2484 2222 114 0 3 chrX 25863056 25863355 -136736575 + AluSx SINE Alu 1 298 -14 3152 300 92 23 chrX 25863355 25864089 -136735841 - L2 LINE L2 -829 2484 1592 2245 108 9 9 chrX 25864089 25864450 -136735480 + L1PB1 LINE L1 5804 6164 0 3152 300 92 23 chrX 25864450 25864517 -136735413 - L2 LINE L2 -1721 1592 1531 473 266 147 27 chrX 25864550 25864734 -136735196 - MIR SINE MIR -56 206 1 184 357 76 38 chrX 25864748 25864905 -136735025 - L2 LINE L2 -1808 1506 1344 277 333 73 18 chrX 25864915 25865080 -136734850 - L2 LINE L2 -1944 1370 1197 677 334 23 30 chrX 25865161 25865463 -136734467 + MLT1J LTR MaLR 209 508 -3 214 331 77 23 chrX 25865551 25865681 -136734249 - L2 LINE L2 -2099 1215 1079 * 284 352 52 28 chrX 25865673 25865886 -136734044 - L3b LINE CR1 -136 1447 1230 253 275 51 51 chrX 25866140 25866274 -136733656 + MIR SINE MIR 34 165 -43 237 303 34 22 chrX 25866980 25867069 -136732861 - L3b LINE CR1 -306 1277 1188 21 36 0 0 chrX 25867237 25867265 -136732665 + AT_rich Low_complexity Low_complexity 1 28 0 376 181 28 0 chrX 25867498 25867570 -136732360 - L1MB5 LINE L1 0 6174 6101 2826 166 13 62 chrX 25867590 25868221 -136731709 - L1MB8 LINE L1 -1 6177 5578 24 0 0 0 chrX 25869143 25869167 -136730763 + AT_rich Low_complexity Low_complexity 1 24 0 218 277 12 72 chrX 25869580 25869663 -136730267 - MER5A DNA MER1_type -95 94 17 * 390 240 0 0 chrX 25869589 25869664 -136730266 + MER5A DNA MER1_type 114 188 -1 383 360 0 15 chrX 25869702 25869838 -136730092 + MIR SINE MIR 8 141 -121 1664 139 7 48 chrX 25869926 25870220 -136729710 - AluJo SINE Alu -30 282 1 296 275 0 0 chrX 25870223 25870292 -136729638 - MER94 DNA DNA -59 75 7 272 184 0 0 chrX 25870420 25870469 -136729461 + MER66A LTR ERV1 290 338 -140 2204 108 0 9 chrX 25870996 25871312 -136728618 - AluSq SINE Alu 0 313 1 2602 51 0 0 chrX 25871421 25871732 -136728198 - AluY SINE Alu 0 311 1 22 0 0 0 chrX 25871871 25871893 -136728037 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrX 25872253 25872295 -136727635 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chrX 25873031 25873067 -136726863 + AT_rich Low_complexity Low_complexity 1 36 0 402 230 8 87 chrX 25873291 25873417 -136726513 - MLT1I LTR MaLR 0 409 294 900 153 0 73 chrX 25873427 25873604 -136726326 + MSTB LTR MaLR 1 164 -262 324 350 17 26 chrX 25873711 25873828 -136726102 - MER5A DNA MER1_type -3 186 71 1444 152 74 4 chrX 25873828 25874084 -136725846 + MSTB1 LTR MaLR 158 431 -1 572 289 71 26 chrX 25874091 25874357 -136725573 - MLT1I LTR MaLR -119 290 13 510 292 11 37 chrX 25874944 25875118 -136724812 - MER5A DNA MER1_type -3 186 6 599 218 48 7 chrX 25875923 25876070 -136723860 - MER92B LTR ERV1 0 636 484 256 284 165 0 chrX 25876070 25876179 -136723751 - MIR SINE MIR -35 227 101 1824 208 42 38 chrX 25876190 25876670 -136723260 - MER92B LTR ERV1 -145 491 10 246 286 218 0 chrX 25876710 25876843 -136723087 - MIR SINE MIR 0 262 101 27 0 0 0 chrX 25877315 25877342 -136722588 + AT_rich Low_complexity Low_complexity 1 27 0 744 261 70 23 chrX 25878166 25878381 -136721549 - L3 LINE CR1 -4 1573 1349 785 169 59 50 chrX 25878575 25878941 -136720989 + LTR37A LTR ERV1 1 426 0 2316 241 89 68 chrX 25879474 25880264 -136719666 + L1M4c LINE L1 916 1745 -4639 2081 109 7 0 chrX 25880264 25880540 -136719390 + AluSq SINE Alu 1 278 -35 2316 241 89 68 chrX 25880540 25881024 -136718906 + L1M4c LINE L1 1745 2217 -4167 292 240 40 0 chrX 25881025 25881100 -136718830 + LTR37A LTR ERV1 294 371 -55 614 223 160 0 chrX 25881242 25881417 -136718513 + MER3 DNA MER1_type 2 204 -5 22 0 0 0 chrX 25881618 25881640 -136718290 + AT_rich Low_complexity Low_complexity 1 22 0 212 154 0 0 chrX 25881800 25881839 -136718091 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1151 14 0 14 chrX 25881949 25882089 -136717841 + L1PA2 LINE L1 6015 6152 -3 296 240 64 22 chrX 25882339 25882443 -136717487 - MER110A LTR ERV1 -10 458 376 1245 192 56 37 chrX 25882833 25883208 -136716722 - LTR37A LTR ERV1 -12 414 33 25 0 0 0 chrX 25884104 25884129 -136715801 + AT_rich Low_complexity Low_complexity 1 25 0 185 91 0 30 chrX 25884255 25884288 -136715642 + (TA)n Simple_repeat Simple_repeat 2 33 0 994 199 89 79 chrX 25884979 25885295 -136714635 + MLT1A1 LTR MaLR 1 319 -46 305 264 101 14 chrX 25885556 25885704 -136714226 - L1ME3A LINE L1 -222 5948 5788 2052 184 108 5 chrX 25889222 25889333 -136710597 - L1MB8 LINE L1 -21 6157 6047 1786 260 131 9 chrX 25889333 25890018 -136709912 - L1MD3 LINE L1 -1973 6022 5254 3264 64 2 18 chrX 25890021 25890476 -136709454 - LTR7 LTR ERV1 -2 448 1 2323 98 50 13 chrX 25890476 25890852 -136709078 - HERVH LTR ERV1 0 7713 7324 1148 121 106 0 chrX 25890852 25891051 -136708879 - HERVH LTR ERV1 -1894 5819 5600 1155 173 0 0 chrX 25891052 25891243 -136708687 - HERVH LTR ERV1 -2564 5149 4959 * 6490 107 14 8 chrX 25891242 25892718 -136707212 - HERVH LTR ERV1 -1818 5273 3492 884 136 27 0 chrX 25892708 25892855 -136707075 - HERVH LTR ERV1 -4423 3290 3140 * 14241 104 15 43 chrX 25892849 25895671 -136704259 - HERVH LTR ERV1 -4726 2987 1 3284 66 2 18 chrX 25895673 25896128 -136703802 - LTR7 LTR ERV1 -2 448 1 1094 235 40 0 chrX 25896128 25896430 -136703500 - L1MD3 LINE L1 -889 5257 4944 560 170 9 0 chrX 25896435 25896541 -136703389 - FLAM_C SINE Alu -3 140 34 247 150 0 0 chrX 25896547 25896587 -136703343 - L1 LINE L1 -1191 4955 4916 424 219 234 7 chrX 25896623 25896760 -136703170 - MER5A DNA MER1_type -2 187 20 919 151 79 0 chrX 25896760 25896912 -136703018 - AluJ SINE Alu -11 301 138 1782 138 61 28 chrX 25896912 25897275 -136702655 - THE1C LTR MaLR 0 375 1 692 192 23 0 chrX 25897284 25897414 -136702516 - AluJ SINE Alu -169 133 1 187 259 103 0 chrX 25898095 25898153 -136701777 + MIR SINE MIR 92 155 -107 340 213 170 0 chrX 25898595 25898689 -136701241 - MLT1-int LTR MaLR -1253 118 9 21 0 0 0 chrX 25899238 25899259 -136700671 + AT_rich Low_complexity Low_complexity 1 21 0 887 164 13 13 chrX 25900132 25900291 -136699639 - AluJb SINE Alu -13 299 141 2093 142 18 24 chrX 25900657 25900996 -136698934 + MER1B DNA MER1_type 1 337 0 1922 125 0 11 chrX 25901068 25901355 -136698575 - AluSx SINE Alu -1 311 28 210 118 0 0 chrX 25901371 25901405 -136698525 + (T)n Simple_repeat Simple_repeat 1 34 0 235 258 0 0 chrX 25901405 25901467 -136698463 - AluSp SINE Alu -138 165 104 210 169 28 14 chrX 25901868 25901939 -136697991 + (TA)n Simple_repeat Simple_repeat 1 72 0 219 320 39 0 chrX 25902082 25902160 -136697770 - MIR SINE MIR 0 262 182 309 216 14 0 chrX 25902372 25902446 -136697484 - LTR50 LTR ERVL -720 75 1 315 255 94 19 chrX 25902539 25902645 -136697285 + MIR3 SINE MIR 95 208 0 404 288 206 33 chrX 25903680 25903881 -136696049 - L2 LINE L2 -90 3223 3058 2107 155 3 24 chrX 25903881 25904262 -136695668 - THE1C LTR MaLR -2 373 1 404 288 206 33 chrX 25904262 25904439 -136695491 - L2 LINE L2 -255 3058 2778 5596 257 44 12 chrX 25904995 25905200 -136694730 - L1MEc LINE L1 -2096 4050 3853 2050 147 0 13 chrX 25905200 25905514 -136694416 - AluSx SINE Alu -2 310 1 5596 257 44 12 chrX 25905514 25907218 -136692712 - L1MEc LINE L1 -2293 3853 2110 407 316 158 36 chrX 25909402 25909731 -136690199 + L2 LINE L2 2944 3312 -1 205 309 139 72 chrX 25909780 25910182 -136689748 - L2 LINE L2 -528 2786 2358 350 289 0 35 chrX 25910271 25910401 -136689529 - MIR SINE MIR -48 160 34 280 308 9 9 chrX 25910458 25910565 -136689365 + (TATATG)n Simple_repeat Simple_repeat 1 107 0 25 51 0 0 chrX 25910909 25910948 -136688982 + AT_rich Low_complexity Low_complexity 1 39 0 842 154 0 0 chrX 25911533 25911675 -136688255 + FRAM SINE Alu 30 171 0 199 266 51 51 chrX 25911794 25911873 -136688057 + MIR SINE MIR 111 189 -73 2222 112 6 37 chrX 25912917 25913265 -136686665 - MER1B DNA MER1_type 0 337 1 428 318 14 14 chrX 25913438 25913586 -136686344 - MIR SINE MIR -6 256 109 270 125 0 0 chrX 25913874 25913922 -136686008 + (TA)n Simple_repeat Simple_repeat 2 49 0 224 321 164 6 chrX 25914526 25914685 -136685245 - MER5A DNA MER1_type -2 187 4 666 128 48 16 chrX 25915705 25915830 -136684100 - L1MB3 LINE L1 -1 6182 6054 379 285 111 52 chrX 25916797 25916969 -136682961 - L2 LINE L2 -485 2829 2648 741 299 71 0 chrX 25917464 25917688 -136682242 + MIR SINE MIR 18 257 -5 22 0 0 0 chrX 25917689 25917711 -136682219 + AT_rich Low_complexity Low_complexity 1 22 0 244 211 0 53 chrX 25919232 25919308 -136680622 - HsTC2 DNA Tc2 -1801 97 26 234 179 0 0 chrX 25921085 25921124 -136678806 + L1ME2 LINE L1 6088 6126 -38 2285 104 7 0 chrX 25921125 25921434 -136678496 - AluSp SINE Alu -2 311 1 397 254 38 70 chrX 25921506 25921719 -136678211 + L1MC4 LINE L1 7836 8041 -1 27 29 0 0 chrX 25921747 25921781 -136678149 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chrX 25921855 25921892 -136678038 + AT_rich Low_complexity Low_complexity 1 37 0 34 72 0 0 chrX 25923167 25923236 -136676694 + AT_rich Low_complexity Low_complexity 1 69 0 2093 91 14 0 chrX 25923604 25923880 -136676050 + AluSc SINE Alu 1 280 -29 991 200 25 0 chrX 25924008 25924208 -136675722 - MER3 DNA MER1_type -4 205 1 1332 298 110 85 chrX 25924586 25924860 -136675070 + L2 LINE L2 1199 1465 -1848 1639 180 7 17 chrX 25924860 25925154 -136674776 - AluJo SINE Alu -21 291 1 1332 298 110 85 chrX 25925154 25926662 -136673268 + L2 LINE L2 1465 3056 -257 1675 162 64 3 chrX 25927010 25927337 -136672593 - MER7A DNA MER2_type -1 345 1 24 0 0 0 chrX 25928211 25928235 -136671695 + AT_rich Low_complexity Low_complexity 1 24 0 2360 86 0 6 chrX 25928587 25928900 -136671030 - AluY SINE Alu 0 311 1 2285 66 0 17 chrX 25929715 25930042 -136669888 + AluY SINE Alu 1 322 0 3927 142 3 2 chrX 25931529 25932163 -136667767 - MER41B LTR ERV1 0 635 1 3122 178 44 18 chrX 25932325 25933012 -136666918 - L1MB8 LINE L1 -10 6168 5464 1568 214 42 35 chrX 25933028 25933482 -136666448 - L1MB8 LINE L1 -933 5213 4757 233 336 35 49 chrX 25933998 25934141 -136665789 + MIR3 SINE MIR 67 207 -1 961 201 0 0 chrX 25934315 25934474 -136665456 + FRAM SINE Alu 1 151 -25 231 114 0 0 chrX 25934523 25934558 -136665372 + (TATG)n Simple_repeat Simple_repeat 2 36 0 244 355 0 0 chrX 25934673 25934766 -136665164 + MIR3 SINE MIR 107 199 -9 6243 179 16 14 chrX 25935622 25937647 -136662283 + L1PA14 LINE L1 4127 6152 -9 297 239 181 29 chrX 25937659 25937797 -136662133 + MER104 DNA Tc2 16 174 -6 196 226 189 0 chrX 25939169 25939222 -136660708 - L2 LINE L2 -5 3308 3246 180 0 0 0 chrX 25939940 25939960 -136659970 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 300 350 21 14 chrX 25940073 25940216 -136659714 + L3 LINE CR1 1397 1540 -37 30 45 0 0 chrX 25940257 25940301 -136659629 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chrX 25940609 25940641 -136659289 + AT_rich Low_complexity Low_complexity 1 32 0 461 347 68 28 chrX 25940667 25940918 -136659012 + L3 LINE CR1 1264 1524 -53 21 0 0 0 chrX 25941151 25941172 -136658758 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrX 25942046 25942096 -136657834 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chrX 25942110 25942132 -136657798 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrX 25942477 25942503 -136657427 + AT_rich Low_complexity Low_complexity 1 26 0 5379 91 3 0 chrX 25942986 25943725 -136656205 + L1PA8 LINE L1 5419 6159 -13 21 0 0 0 chrX 25943725 25943746 -136656184 + AT_rich Low_complexity Low_complexity 1 21 0 252 184 0 0 chrX 25943836 25943885 -136656045 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 316 350 124 5 chrX 25944298 25944515 -136655415 + MIR SINE MIR 2 244 -18 290 323 61 20 chrX 25944596 25944695 -136655235 - L2 LINE L2 -2 3270 3168 230 290 0 29 chrX 25945158 25945227 -136654703 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1816 51 0 40 chrX 25945429 25945682 -136654248 + L1PA5 LINE L1 5905 6147 -7 201 352 46 19 chrX 25945812 25945920 -136654010 - L2 LINE L2 -219 3053 2943 400 315 183 0 chrX 25946046 25946265 -136653665 - L2 LINE L2 -1146 2168 1910 458 303 29 49 chrX 25948619 25948863 -136651067 + L2 LINE L2 3072 3310 -3 2115 259 43 3 chrX 25948927 25949600 -136650330 - L1M4 LINE L1 -3092 3865 3166 1877 279 90 22 chrX 25949656 25950125 -136649805 - L1M4 LINE L1 -6256 603 89 489 34 0 0 chrX 25950125 25950184 -136649746 + (TG)n Simple_repeat Simple_repeat 2 60 0 1877 279 90 22 chrX 25950184 25950267 -136649663 - L1M4 LINE L1 -6770 89 13 14067 32 11 0 chrX 25950805 25952513 -136647417 - L1P LINE L1 -1163 4983 3257 1212 14 0 0 chrX 25952513 25952652 -136647278 + L1PA2 LINE L1 6016 6155 0 22 35 0 0 chrX 25952752 25952781 -136647149 + AT_rich Low_complexity Low_complexity 1 29 0 2237 96 3 0 chrX 25953035 25953336 -136646594 + AluSg SINE Alu 1 302 -8 1798 153 38 6 chrX 25953345 25953692 -136646238 - L1MA8 LINE L1 -1 6290 5933 23 54 0 0 chrX 25954534 25954571 -136645359 + AT_rich Low_complexity Low_complexity 1 37 0 322 217 72 12 chrX 25954761 25954844 -136645086 - L1ME LINE L1 -542 5579 5492 215 219 0 0 chrX 25956024 25956065 -136643865 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2554 51 0 6 chrX 25956083 25956395 -136643535 + AluY SINE Alu 1 310 -1 249 108 0 0 chrX 25956677 25956714 -136643216 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2843 46 3 0 chrX 25956714 25957064 -136642866 - L1PA8 LINE L1 -24 6148 5798 316 219 16 0 chrX 25957156 25957220 -136642710 - MER20 DNA MER1_type -154 65 1 1318 193 87 40 chrX 25957903 25958224 -136641706 - MER2 DNA MER2_type -6 339 4 393 58 0 0 chrX 25958225 25958277 -136641653 + (TG)n Simple_repeat Simple_repeat 1 52 0 328 330 67 26 chrX 25958327 25958672 -136641258 - HAL1b LINE L1 -679 669 311 21 57 0 0 chrX 25958821 25958856 -136641074 + AT_rich Low_complexity Low_complexity 1 35 0 303 319 35 50 chrX 25959703 25959985 -136639945 - L1MC/D LINE L1 -1965 5843 5566 214 343 81 19 chrX 25962864 25963074 -136636856 + L2 LINE L2 2100 2322 -992 1430 209 60 2 chrX 25963653 25964074 -136635856 - L1MCa LINE L1 -3592 2834 2375 249 119 0 0 chrX 25964074 25964116 -136635814 + (TA)n Simple_repeat Simple_repeat 1 42 0 1430 209 60 2 chrX 25964116 25964256 -136635674 - L1MCa LINE L1 -4051 2375 2245 275 70 93 0 chrX 25964265 25964308 -136635622 - L1PA6 LINE L1 -360 5794 5748 2435 73 3 28 chrX 25964309 25964665 -136635265 + L1PA6 LINE L1 5801 6147 -7 280 257 137 69 chrX 25965467 25965642 -136634288 + MIR SINE MIR 65 251 -11 1489 153 143 20 chrX 25965663 25965963 -136633967 - MER44D DNA MER2_type -1 608 2 204 40 0 0 chrX 25965967 25965992 -136633938 + (TTA)n Simple_repeat Simple_repeat 2 26 0 714 196 139 0 chrX 25966359 25966517 -136633413 + MER58A DNA MER1_type 37 216 -8 8093 20 0 0 chrX 25966517 25967603 -136632327 - L1PA3 LINE L1 -633 5522 4437 5502 10 0 0 chrX 25967603 25968218 -136631712 + L1PA3 LINE L1 5524 6141 -14 22 0 0 0 chrX 25968359 25968381 -136631549 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 25969102 25969129 -136630801 + AT_rich Low_complexity Low_complexity 1 27 0 14232 33 5 0 chrX 25972397 25974116 -136625814 - L1P LINE L1 -1163 4983 3257 1212 14 0 0 chrX 25974116 25974255 -136625675 + L1PA2 LINE L1 6016 6155 0 22 35 0 0 chrX 25974355 25974384 -136625546 + AT_rich Low_complexity Low_complexity 1 29 0 2237 96 3 0 chrX 25974638 25974939 -136624991 + AluSg SINE Alu 1 302 -8 1798 153 38 6 chrX 25974948 25975295 -136624635 - L1MA8 LINE L1 -1 6290 5933 22 56 0 0 chrX 25976137 25976173 -136623757 + AT_rich Low_complexity Low_complexity 1 36 0 322 217 72 12 chrX 25976363 25976446 -136623484 - L1ME LINE L1 -542 5579 5492 215 219 0 0 chrX 25977626 25977667 -136622263 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2537 52 0 7 chrX 25977685 25977995 -136621935 + AluY SINE Alu 1 308 -3 249 108 0 0 chrX 25978277 25978314 -136621616 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2843 46 3 0 chrX 25978314 25978664 -136621266 - L1PA8 LINE L1 -24 6148 5798 302 234 16 0 chrX 25978756 25978820 -136621110 - MER20 DNA MER1_type -154 65 1 1302 196 87 40 chrX 25979503 25979824 -136620106 - MER2 DNA MER2_type -6 339 4 393 58 0 0 chrX 25979825 25979877 -136620053 + (TG)n Simple_repeat Simple_repeat 1 52 0 328 330 67 26 chrX 25979927 25980272 -136619658 - HAL1b LINE L1 -679 669 311 21 57 0 0 chrX 25980421 25980456 -136619474 + AT_rich Low_complexity Low_complexity 1 35 0 303 319 35 50 chrX 25981303 25981585 -136618345 - L1MC/D LINE L1 -1965 5843 5566 214 343 81 19 chrX 25984468 25984678 -136615252 + L2 LINE L2 2100 2322 -992 255 346 45 45 chrX 25985370 25985526 -136614404 + MIR SINE MIR 57 212 -50 325 261 62 72 chrX 25985530 25985725 -136614205 + L1ME4a LINE L1 5751 5943 -178 21 36 0 0 chrX 25986139 25986167 -136613763 + AT_rich Low_complexity Low_complexity 1 28 0 243 274 0 0 chrX 25986823 25986976 -136612954 + (TA)n Simple_repeat Simple_repeat 1 153 0 2086 113 0 3 chrX 25986977 25987260 -136612670 - AluSq SINE Alu -31 282 1 529 110 0 0 chrX 25987695 25987768 -136612162 + 5S rRNA rRNA 49 121 0 369 0 0 0 chrX 25988835 25988876 -136611054 + (TG)n Simple_repeat Simple_repeat 2 42 0 241 382 34 22 chrX 25988935 25989113 -136610817 + L2 LINE L2 2479 2658 -656 277 332 109 21 chrX 25989210 25989403 -136610527 - MIR SINE MIR 0 262 53 2353 65 0 3 chrX 25989415 25989708 -136610222 + AluY SINE Alu 1 292 -19 1619 137 7 46 chrX 25990367 25990651 -136609279 - AluJo SINE Alu -39 273 1 296 275 0 0 chrX 25990654 25990723 -136609207 - MER94 DNA DNA -59 75 7 272 184 0 0 chrX 25990851 25990900 -136609030 + MER66B LTR ERV1 298 346 -140 2363 48 10 19 chrX 25991427 25991741 -136608189 - AluY SINE Alu 0 311 1 2360 86 0 6 chrX 25992557 25992870 -136607060 + AluY SINE Alu 1 311 0 210 169 28 14 chrX 25993550 25993621 -136606309 + (TA)n Simple_repeat Simple_repeat 1 72 0 219 320 39 0 chrX 25993764 25993842 -136606088 - MIR SINE MIR 0 262 182 309 216 14 0 chrX 25994064 25994138 -136605792 - LTR50 LTR ERVL -720 75 1 315 255 94 19 chrX 25994231 25994337 -136605593 + MIR3 SINE MIR 95 208 0 266 319 26 26 chrX 25995806 25995922 -136604008 - L3 LINE CR1 -107 1470 1355 23 78 0 0 chrX 25996061 25996112 -136603818 + AT_rich Low_complexity Low_complexity 1 51 0 186 309 10 62 chrX 25996215 25996312 -136603618 - MIR SINE MIR -76 186 95 212 154 0 0 chrX 25997231 25997270 -136602660 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chrX 25997430 25997452 -136602478 + AT_rich Low_complexity Low_complexity 1 22 0 614 223 160 0 chrX 25997653 25997828 -136602102 - MER3 DNA MER1_type -5 204 2 292 240 40 0 chrX 25997970 25998045 -136601885 - LTR37A LTR ERV1 -55 371 294 454 199 123 29 chrX 25998046 25998217 -136601713 - L1M4c LINE L1 -4167 2479 2293 536 316 44 12 chrX 25998260 25998510 -136601420 - L1M4c LINE L1 -4493 2153 1896 342 380 37 37 chrX 25999773 26000097 -136599833 + L2 LINE L2 2943 3266 -6 24 0 0 0 chrX 26000818 26000842 -136599088 + AT_rich Low_complexity Low_complexity 1 24 0 2374 212 21 75 chrX 26003421 26003671 -136596259 + L1 LINE L1 4543 4805 -1341 409 187 76 40 chrX 26003671 26003819 -136596111 + LTR19C LTR ERV1 39 227 -552 2374 212 21 75 chrX 26003819 26004345 -136595585 + L1 LINE L1 4805 5331 -815 256 195 23 23 chrX 26004469 26004556 -136595374 + L1MA4 LINE L1 2039 2125 -4724 4080 191 36 1 chrX 26004635 26005484 -136594446 + L1MA4 LINE L1 4565 5443 -1405 1905 136 0 37 chrX 26006187 26006511 -136593419 - AluJo SINE Alu 0 312 1 2769 265 87 5 chrX 26006869 26006970 -136592960 - L1M4c LINE L1 -5645 897 806 333 0 0 0 chrX 26006970 26007007 -136592923 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 513 32 0 0 chrX 26007006 26007069 -136592861 + (TG)n Simple_repeat Simple_repeat 2 64 0 2769 265 87 5 chrX 26007007 26007782 -136592148 - L1M4c LINE L1 -5736 806 16 1836 144 34 8 chrX 26007956 26008311 -136591619 - L1MA5 LINE L1 -2 6298 5935 5001 217 30 20 chrX 26008839 26009985 -136589945 + L1M2 LINE L1 2 1158 -5691 2508 119 18 2 chrX 26010117 26010511 -136589419 + L1PA16 LINE L1 5758 6157 -9 3718 204 32 2 chrX 26010521 26010871 -136589059 + L1MA4 LINE L1 6130 6468 -534 591 15 0 0 chrX 26010871 26010939 -136588991 + (TA)n Simple_repeat Simple_repeat 1 68 0 3718 204 32 2 chrX 26010939 26011401 -136588529 + L1MA4 LINE L1 6468 6966 -36 1263 222 48 14 chrX 26011787 26012143 -136587787 + L1MB8 LINE L1 5805 6172 -6 8022 107 8 55 chrX 26013156 26014755 -136585175 + HERVH LTR ERV1 335 2100 -5613 6922 155 22 7 chrX 26015005 26016221 -136583709 + Tigger1 DNA MER2_type 657 1891 -527 4018 165 109 35 chrX 26016327 26017373 -136582557 + L1MCa LINE L1 908 2030 -4396 283 256 13 0 chrX 26017392 26017470 -136582460 + Tigger4(Zombi) DNA MER2_type 1 79 -2652 613 327 118 35 chrX 26017698 26018154 -136581776 - HAL1 LINE L1 -395 2112 1619 22 35 0 0 chrX 26018227 26018256 -136581674 + AT_rich Low_complexity Low_complexity 1 29 0 381 252 29 91 chrX 26018461 26018671 -136581259 - MER58A DNA MER1_type -1 223 27 308 146 156 10 chrX 26018771 26018867 -136581063 + L1MA4 LINE L1 6187 6296 -4 * 1292 249 57 19 chrX 26018860 26019626 -136580304 + L1MEc LINE L1 1577 2268 -3947 833 263 144 36 chrX 26020453 26020966 -136578964 - MLT1G1 LTR MaLR 0 595 4 9110 28 3 1 chrX 26021140 26022273 -136577657 - L1P LINE L1 -2788 3358 2223 189 0 0 0 chrX 26022665 26022686 -136577244 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2125 94 0 4 chrX 26022686 26022962 -136576968 - AluSc SINE Alu -32 277 3 23 94 0 0 chrX 26023138 26023191 -136576739 + AT_rich Low_complexity Low_complexity 1 53 0 4105 139 14 5 chrX 26023606 26024270 -136575660 - L1PA16 LINE L1 -98 6068 5399 900 175 0 7 chrX 26074722 26074876 -136525054 - L1PA16 LINE L1 -1173 4973 4821 1040 141 11 16 chrX 26074878 26075063 -136524867 - L1MA6 LINE L1 -392 5908 5725 1033 298 98 39 chrX 26075128 26075428 -136524502 + L2 LINE L2 2818 3157 -156 1483 165 171 0 chrX 26075428 26075743 -136524187 - MER93b LTR ERV1 0 373 5 1033 298 98 39 chrX 26075743 26075909 -136524021 + L2 LINE L2 3157 3312 -1 21 0 0 0 chrX 26077313 26077334 -136522596 + AT_rich Low_complexity Low_complexity 1 21 0 537 233 0 0 chrX 26077599 26077715 -136522215 - L1PA8A LINE L1 0 6131 6016 259 105 0 0 chrX 26077716 26077754 -136522176 - L1PA10 LINE L1 -116 6052 6015 2390 83 6 3 chrX 26078391 26078703 -136521227 - AluSq SINE Alu 0 313 1 2258 92 0 10 chrX 26079032 26079327 -136520603 + AluSc SINE Alu 1 292 -17 2087 102 0 0 chrX 26082414 26082697 -136517233 - AluSq SINE Alu -30 283 1 256 168 104 144 chrX 26083125 26083250 -136516680 - LTR37B LTR ERV1 -326 142 23 35 41 0 0 chrX 26084149 26084198 -136515732 + AT_rich Low_complexity Low_complexity 1 49 0 251 351 45 0 chrX 26085245 26085356 -136514574 + L2 LINE L2 3152 3267 -5 203 283 203 43 chrX 26086112 26086250 -136513680 - MIR3 SINE MIR -7 201 42 1139 263 75 38 chrX 26086619 26086718 -136513212 + L1ME3A LINE L1 5702 5796 -374 2061 106 10 20 chrX 26086718 26087020 -136512910 - AluSg SINE Alu -11 299 1 1139 263 75 38 chrX 26087020 26087372 -136512558 + L1ME3A LINE L1 5796 6170 0 234 0 0 0 chrX 26087737 26087763 -136512167 + (CA)n Simple_repeat Simple_repeat 2 27 0 188 284 25 86 chrX 26087919 26088081 -136511849 - L2 LINE L2 -274 2998 2847 1835 141 7 43 chrX 26088680 26088984 -136510946 + AluSx SINE Alu 1 293 -19 817 204 6 12 chrX 26089535 26089702 -136510228 + FRAM SINE Alu 1 166 0 502 286 86 40 chrX 26090828 26091071 -136508859 + LTR33 LTR ERVL 1 264 -257 2039 100 7 0 chrX 26091071 26091352 -136508578 + AluSq SINE Alu 18 300 -13 502 286 86 40 chrX 26091352 26091433 -136508497 + LTR33 LTR ERVL 264 340 -181 468 77 0 0 chrX 26091450 26091515 -136508415 + (TG)n Simple_repeat Simple_repeat 2 66 0 2150 231 26 0 chrX 26091702 26092195 -136507735 - L1P LINE L1 -1777 4369 3864 673 292 39 27 chrX 26092379 26092636 -136507294 + MIR SINE MIR 3 262 0 2345 222 20 35 chrX 26092832 26093479 -136506451 + L1ME1 LINE L1 5538 6334 0 3992 147 76 0 chrX 26093754 26093924 -136506006 + HSMAR2 DNA Mariner 1 157 -1145 2187 99 0 3 chrX 26093924 26094217 -136505713 + AluSq SINE Alu 1 292 -21 3992 147 76 0 chrX 26094217 26094747 -136505183 + HSMAR2 DNA Mariner 157 754 -548 5765 83 15 11 chrX 26094753 26095550 -136504380 + L1PA11 LINE L1 5374 6173 -1 2892 137 102 14 chrX 26095550 26096062 -136503868 + HSMAR2 DNA Mariner 744 1300 -2 21 36 0 0 chrX 26098081 26098109 -136501821 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chrX 26098397 26098426 -136501504 + AT_rich Low_complexity Low_complexity 1 29 0 330 154 15 0 chrX 26098442 26098507 -136501423 - L1PB4 LINE L1 -8 6148 6083 225 321 24 77 chrX 26100236 26100404 -136499526 - L2 LINE L2 -518 2796 2638 970 141 32 145 chrX 26100476 26100568 -136499362 + L1MB7 LINE L1 5934 6035 -149 1900 137 89 17 chrX 26100568 26100918 -136499012 - THE1C LTR MaLR 0 375 1 970 141 32 145 chrX 26100918 26101108 -136498822 + L1MB7 LINE L1 6035 6184 0 1984 177 9 0 chrX 26101927 26102272 -136497658 + MER7A DNA MER2_type 1 346 0 2292 74 37 0 chrX 26102608 26102904 -136497026 + AluSc SINE Alu 1 307 -2 232 308 15 0 chrX 26105758 26105823 -136494107 - MIR SINE MIR -147 115 50 731 277 71 9 chrX 26106053 26106277 -136493653 + MIR SINE MIR 6 243 -19 2432 193 35 21 chrX 26106447 26107022 -136492908 - L1MB8 LINE L1 0 6178 5596 218 336 46 30 chrX 26107032 26107163 -136492767 + L2 LINE L2 2620 2752 -562 274 292 0 0 chrX 26107211 26107276 -136492654 - L2 LINE L2 -2 3311 3247 180 0 0 0 chrX 26107917 26107937 -136491993 + (ATTTG)n Simple_repeat Simple_repeat 3 22 0 1279 124 16 0 chrX 26108059 26108253 -136491677 + L1PA8 LINE L1 5972 6168 -4 513 183 77 30 chrX 26108351 26108520 -136491410 + L1MC5 LINE L1 7652 7828 -133 6255 158 9 5 chrX 26108528 26109587 -136490343 - L1MC1 LINE L1 0 6333 5268 243 0 0 0 chrX 26109587 26109614 -136490316 + (TG)n Simple_repeat Simple_repeat 2 28 0 6255 158 9 5 chrX 26109614 26109627 -136490303 - L1MC1 LINE L1 -1065 5268 5257 1888 150 57 59 chrX 26109637 26109945 -136489985 - L1MA8 LINE L1 -6 6285 5977 2385 92 13 0 chrX 26109945 26110250 -136489680 - AluSc SINE Alu 0 309 1 1888 150 57 59 chrX 26110250 26110382 -136489548 - L1MA8 LINE L1 -314 5977 5846 * 2222 201 13 60 chrX 26110379 26110566 -136489364 - L1M3e LINE L1 -6523 507 313 2028 142 35 30 chrX 26110566 26110939 -136488991 - THE1C LTR MaLR 0 375 1 2222 201 13 60 chrX 26110939 26111283 -136488647 - L1M3e LINE L1 -6717 313 1 2691 249 18 19 chrX 26111285 26112076 -136487854 - L1MC1 LINE L1 -870 5276 4487 276 130 0 0 chrX 26113645 26113691 -136486239 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 223 305 0 0 chrX 26113702 26113761 -136486169 + L2 LINE L2 3203 3261 -11 410 325 40 0 chrX 26113792 26113918 -136486012 + MER91C DNA MER1_type 2 132 -8 354 341 0 16 chrX 26113980 26114106 -136485824 + MER5B DNA MER1_type 25 148 -30 273 75 0 0 chrX 26114408 26114448 -136485482 + (CA)n Simple_repeat Simple_repeat 1 40 0 474 291 112 8 chrX 26114448 26114633 -136485297 + MIR SINE MIR 29 232 -30 22 0 0 0 chrX 26114861 26114883 -136485047 + AT_rich Low_complexity Low_complexity 1 22 0 198 367 62 35 chrX 26115125 26115384 -136484546 - L2 LINE L2 -430 2884 2619 228 35 0 0 chrX 26115565 26115594 -136484336 + (CA)n Simple_repeat Simple_repeat 2 30 0 1546 91 0 57 chrX 26116514 26116744 -136483186 - AluY SINE Alu -6 305 89 478 40 122 0 chrX 26116762 26116776 -136483154 - AluY SINE Alu -174 137 126 207 0 0 0 chrX 26116776 26116799 -136483131 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 478 40 122 0 chrX 26116799 26116858 -136483072 - AluY SINE Alu -185 126 55 710 138 9 9 chrX 26117242 26117358 -136482572 + AluSg/x SINE Alu 174 289 -20 301 219 73 10 chrX 26118503 26118599 -136481331 + MER103 DNA DNA 64 165 -1 25 0 0 0 chrX 26119177 26119202 -136480728 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chrX 26121493 26121516 -136478414 + (A)n Simple_repeat Simple_repeat 1 23 0 223 333 16 0 chrX 26121650 26121713 -136478217 - MER5B DNA MER1_type -7 171 108 200 330 33 33 chrX 26121667 26121758 -136478172 + MER5A DNA MER1_type 36 126 -63 * 339 208 255 54 chrX 26122062 26122211 -136477719 - MER5A DNA MER1_type 0 189 11 192 302 81 58 chrX 26123075 26123161 -136476769 - L2 LINE L2 -36 3236 3149 223 312 13 0 chrX 26124222 26124299 -136475631 + MIR SINE MIR 166 243 -19 426 116 14 0 chrX 26124482 26124551 -136475379 + MER41B LTR ERV1 481 550 -85 2015 129 7 0 chrX 26125857 26126165 -136473765 + AluSx SINE Alu 1 310 0 23 33 0 0 chrX 26126687 26126717 -136473213 + AT_rich Low_complexity Low_complexity 1 30 0 1083 160 11 27 chrX 26127184 26127371 -136472559 - AluJo SINE Alu -23 289 106 899 122 0 23 chrX 26127590 26127762 -136472168 + (TCC)n Simple_repeat Simple_repeat 1 168 0 1276 199 18 53 chrX 26127762 26128044 -136471886 - AluJo SINE Alu -19 293 22 487 298 161 19 chrX 26128124 26128329 -136471601 - MIR SINE MIR 0 262 29 853 126 0 0 chrX 26129437 26129556 -136470374 - AluSg/x SINE Alu -17 293 175 203 61 30 0 chrX 26129864 26129897 -136470033 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 693 227 11 17 chrX 26130495 26130671 -136469259 - MER104 DNA Tc2 -5 175 1 251 273 61 0 chrX 26131368 26131434 -136468496 - MIR SINE MIR -2 260 191 2022 177 7 57 chrX 26131447 26131795 -136468135 - L1MD3 LINE L1 0 7995 7674 599 231 25 0 chrX 26131795 26131916 -136468014 - FLAM_A SINE Alu -9 124 1 2022 177 7 57 chrX 26131916 26132020 -136467910 - L1MD3 LINE L1 -321 7674 7566 476 250 181 0 chrX 26132020 26132180 -136467750 - MIR SINE MIR -68 194 6 193 289 0 0 chrX 26132244 26132296 -136467634 + MIR SINE MIR 120 171 -91 784 241 78 13 chrX 26133891 26134123 -136465807 + L2 LINE L2 2354 2600 -714 1335 158 4 39 chrX 26134123 26134382 -136465548 - L1MA7 LINE L1 -146 6145 5896 1578 76 0 5 chrX 26134390 26134587 -136465343 - AluSg/x SINE Alu -22 290 95 4970 96 1 26 chrX 26134587 26135314 -136464616 - L1PA13 LINE L1 -8 6155 5447 494 194 28 0 chrX 26135317 26135425 -136464505 - L1PA13 LINE L1 -1033 5113 5003 1663 67 0 0 chrX 26135764 26136004 -136463926 - AluY SINE Alu 0 341 102 1149 173 40 0 chrX 26136005 26136207 -136463723 - L1M4b LINE L1 -5679 1180 971 * 2652 233 40 51 chrX 26136205 26136888 -136463042 - L1M4b LINE L1 -6183 676 2 372 286 88 29 chrX 26137333 26137504 -136462426 + MIR SINE MIR 34 214 -48 447 323 37 56 chrX 26138178 26138591 -136461339 - L2 LINE L2 -210 3062 2659 378 0 0 0 chrX 26139321 26139363 -136460567 + (CA)n Simple_repeat Simple_repeat 2 43 0 240 191 0 0 chrX 26141475 26141517 -136458413 - MER117 DNA MER1_type -155 42 1 515 269 47 13 chrX 26143488 26143637 -136456293 - MIR SINE MIR -76 186 33 257 295 29 19 chrX 26143751 26143856 -136456074 - MIR SINE MIR -48 214 109 225 0 0 0 chrX 26146303 26146328 -136453602 + (CATTC)n Simple_repeat Simple_repeat 1 25 0 459 92 0 0 chrX 26146462 26146527 -136453403 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 216 221 58 70 chrX 26146798 26146884 -136453046 - L2 LINE L2 -500 2814 2730 2369 110 0 0 chrX 26147015 26147325 -136452605 + AluSg SINE Alu 1 310 0 2010 111 25 38 chrX 26147688 26148003 -136451927 + AluSq SINE Alu 1 311 -2 22 0 0 0 chrX 26148645 26148667 -136451263 + AT_rich Low_complexity Low_complexity 1 22 0 213 348 98 37 chrX 26149331 26149575 -136450355 - L2 LINE L2 -1188 2126 1868 207 148 0 37 chrX 26149705 26149759 -136450171 + (TTTTTG)n Simple_repeat Simple_repeat 4 55 0 1706 184 26 3 chrX 26149796 26150101 -136449829 + AluJb SINE Alu 1 312 0 1648 139 0 97 chrX 26150437 26150614 -136449316 - AluJo SINE Alu -4 298 105 902 128 7 0 chrX 26150614 26150763 -136449167 + (TTTC)n Simple_repeat Simple_repeat 2 151 0 2230 89 0 7 chrX 26150765 26151046 -136448884 - AluSp SINE Alu -32 281 3 1648 139 0 97 chrX 26151046 26151195 -136448735 - AluJo SINE Alu -198 104 1 2234 88 7 3 chrX 26154388 26154685 -136445245 - AluSq SINE Alu -15 298 1 25 65 0 0 chrX 26154838 26154884 -136445046 + AT_rich Low_complexity Low_complexity 1 46 0 702 208 57 6 chrX 26155098 26155257 -136444673 - MIR SINE MIR -25 237 71 533 274 35 97 chrX 26155344 26155683 -136444247 - MER102b DNA MER1_type -12 329 12 342 354 95 36 chrX 26156374 26156679 -136443251 + L3 LINE CR1 1110 1432 -145 2459 73 0 0 chrX 26156827 26157128 -136442802 - AluSc SINE Alu -8 301 1 1657 158 18 18 chrX 26157444 26157728 -136442202 + AluJb SINE Alu 1 284 -28 797 195 0 13 chrX 26157592 26157741 -136442189 + AluJb SINE Alu 151 297 -15 2373 88 10 0 chrX 26158086 26158393 -136441537 + AluSx SINE Alu 1 310 -2 1317 164 31 31 chrX 26158924 26159216 -136440714 - L1MA9 LINE L1 -4 6308 6017 269 200 14 0 chrX 26159424 26159494 -136440436 - LTR66 LTR ERVL -151 459 389 566 191 69 39 chrX 26162092 26162296 -136437634 + MER113 DNA MER1_type? 1 210 -311 2302 134 106 3 chrX 26162818 26163206 -136436724 - MSTA LTR MaLR 0 428 1 582 255 13 27 chrX 26163308 26163457 -136436473 - MIR SINE MIR -20 242 96 2212 101 0 40 chrX 26164168 26164494 -136435436 + AluSq SINE Alu 1 313 0 23 0 0 0 chrX 26164742 26164765 -136435165 + AT_rich Low_complexity Low_complexity 1 23 0 39 0 0 0 chrX 26166382 26166421 -136433509 + AT_rich Low_complexity Low_complexity 1 39 0 34 0 0 0 chrX 26166626 26166660 -136433270 + AT_rich Low_complexity Low_complexity 1 34 0 186 103 0 0 chrX 26168029 26168058 -136431872 + (TTG)n Simple_repeat Simple_repeat 2 30 0 518 244 169 12 chrX 26168225 26168385 -136431545 + MER5A DNA MER1_type 5 189 0 2150 95 0 3 chrX 26168561 26168871 -136431059 + AluSq SINE Alu 1 309 0 202 254 55 36 chrX 26169222 26169277 -136430653 - MIR SINE MIR -171 91 36 25 0 0 0 chrX 26169536 26169561 -136430369 + AT_rich Low_complexity Low_complexity 1 25 0 2296 97 0 0 chrX 26169624 26169924 -136430006 + AluSc SINE Alu 1 300 -9 834 283 109 42 chrX 26169924 26170309 -136429621 - MER57B LTR ERV1 -14 420 10 649 300 4 84 chrX 26170315 26170588 -136429342 + MIR SINE MIR 12 262 0 11573 146 9 8 chrX 26170761 26171346 -136428584 + L1MA3 LINE L1 3203 3786 -2519 2281 79 7 10 chrX 26171346 26171650 -136428280 + AluSq SINE Alu 1 303 -10 11573 146 9 8 chrX 26171650 26172077 -136427853 + L1MA3 LINE L1 3786 4211 -2094 2299 96 3 0 chrX 26172077 26172380 -136427550 + AluSp SINE Alu 1 304 -9 11573 146 9 8 chrX 26172380 26174461 -136425469 + L1MA3 LINE L1 4211 6298 -7 295 341 106 22 chrX 26174472 26174651 -136425279 - MLT1J LTR MaLR -92 419 226 226 333 0 0 chrX 26174735 26174804 -136425126 - MLT1J LTR MaLR -331 180 112 23 33 0 0 chrX 26176128 26176158 -136423772 + AT_rich Low_complexity Low_complexity 1 30 0 1633 254 28 74 chrX 26177650 26178088 -136421842 - L1ME3A LINE L1 -35 6135 5728 2265 75 4 0 chrX 26178088 26178393 -136421537 - AluSp SINE Alu 0 306 1 1633 254 28 74 chrX 26178393 26178532 -136421398 - L1ME3A LINE L1 -442 5728 5584 27 29 0 0 chrX 26179165 26179199 -136420731 + AT_rich Low_complexity Low_complexity 1 34 0 233 258 97 0 chrX 26180599 26180692 -136419238 - L1ME4a LINE L1 -76 6114 6013 26 64 0 0 chrX 26180736 26180783 -136419147 + AT_rich Low_complexity Low_complexity 1 47 0 663 315 123 16 chrX 26181002 26181516 -136418414 - L1ME4a LINE L1 -219 6020 5452 609 279 36 58 chrX 26181577 26181613 -136418317 - L1ME4a LINE L1 -917 5298 5263 2204 108 13 0 chrX 26181613 26181918 -136418012 - AluSx SINE Alu -3 309 1 609 279 36 58 chrX 26181918 26182243 -136417687 - L1ME4a LINE L1 -952 5263 4945 420 288 84 56 chrX 26182269 26182486 -136417444 - MLT1J2 LTR MaLR 0 450 184 2097 95 0 41 chrX 26182486 26182801 -136417129 - AluSg SINE Alu -6 304 3 420 288 84 56 chrX 26182801 26182921 -136417009 - MLT1J2 LTR MaLR -266 184 69 670 303 79 20 chrX 26183125 26183622 -136416308 - L1ME4a LINE L1 -1527 4688 4129 523 295 146 23 chrX 26183680 26184307 -136415623 - L1ME4a LINE L1 -2364 3851 3303 2155 115 6 6 chrX 26184307 26184620 -136415310 - AluSq SINE Alu 0 313 1 523 295 146 23 chrX 26184620 26184957 -136414973 - L1ME4a LINE L1 -2912 3303 2750 370 269 43 92 chrX 26185183 26185645 -136414285 - L1MEc LINE L1 -3774 2441 2046 26 0 0 0 chrX 26185812 26185838 -136414092 + AT_rich Low_complexity Low_complexity 1 26 0 246 335 129 45 chrX 26185928 26186462 -136413468 - L2 LINE L2 -568 2746 2168 196 294 64 0 chrX 26186653 26186762 -136413168 - L2 LINE L2 -1271 2043 1928 600 281 42 35 chrX 26187923 26188183 -136411747 - MIR SINE MIR 0 262 1 265 240 10 21 chrX 26188786 26188882 -136411048 + (TA)n Simple_repeat Simple_repeat 1 95 0 2730 178 46 89 chrX 26189076 26189794 -136410136 + L1MCa LINE L1 1 687 -5739 2586 192 7 9 chrX 26189798 26190356 -136409574 - L1P LINE L1 -959 5187 4631 2427 231 7 5 chrX 26190371 26190965 -136408965 + L1M4 LINE L1 3577 4171 -1975 381 229 0 12 chrX 26190965 26191048 -136408882 - Tigger5 DNA MER2_type 0 2323 2242 359 192 0 26 chrX 26191038 26191116 -136408814 + Tigger5 DNA MER2_type 2242 2317 -6 * 412 244 0 0 chrX 26191118 26191196 -136408734 - Tigger5 DNA MER2_type -2244 79 2 344 264 0 0 chrX 26191196 26191283 -136408647 + L1M4 LINE L1 4171 4257 -1889 868 212 10 26 chrX 26191318 26191545 -136408385 - MLT1D LTR MaLR -327 178 1 21 0 0 0 chrX 26191622 26191643 -136408287 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chrX 26192075 26192103 -136407827 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 351 0 0 0 chrX 26192102 26192141 -136407789 + (CA)n Simple_repeat Simple_repeat 1 39 0 1953 114 0 0 chrX 26192698 26192999 -136406931 - AluSx SINE Alu 0 324 24 1394 182 41 3 chrX 26193412 26193703 -136406227 + MER33 DNA MER1_type 1 302 -22 188 339 68 0 chrX 26194573 26194632 -136405298 + L2 LINE L2 3170 3232 -40 359 288 49 25 chrX 26195627 26195790 -136404140 + MIR SINE MIR 87 253 -9 858 215 16 0 chrX 26196926 26197112 -136402818 - MER5A DNA MER1_type 0 189 1 376 278 40 20 chrX 26197216 26197367 -136402563 + L2 LINE L2 2192 2345 -969 2125 106 0 23 chrX 26197370 26197671 -136402259 + AluSg1 SINE Alu 1 294 -15 535 225 56 6 chrX 26197742 26197902 -136402028 + L1MC4 LINE L1 7244 7411 -631 423 330 39 80 chrX 26198089 26198425 -136401505 + L2 LINE L2 2904 3225 -47 219 69 0 0 chrX 26198447 26198476 -136401454 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 2356 77 3 0 chrX 26198732 26199030 -136400900 - AluSp SINE Alu -9 304 6 2591 52 0 0 chrX 26199281 26199586 -136400344 - AluY SINE Alu -6 305 1 244 294 47 12 chrX 26201337 26201422 -136398508 - MER5A DNA MER1_type 0 189 91 231 244 0 0 chrX 26201418 26201459 -136398471 + MER5A DNA MER1_type 149 189 0 * 554 295 22 16 chrX 26201733 26201916 -136398014 + MER46C DNA MER2_type 138 321 -17 1848 129 0 103 chrX 26201945 26202333 -136397597 + MER7A DNA MER2_type 1 346 0 4598 160 13 30 chrX 26203196 26204095 -136395835 - L1MC2 LINE L1 -10 6334 5451 577 238 64 53 chrX 26204501 26204783 -136395147 - L1MC5 LINE L1 -50 7911 7627 701 236 26 52 chrX 26204800 26205033 -136394897 - L1MC5 LINE L1 -393 7568 7342 182 359 28 38 chrX 26205205 26205311 -136394619 - MIR3 SINE MIR -103 105 1 1955 136 0 7 chrX 26205423 26205729 -136394201 - AluSq SINE Alu 0 304 1 2315 96 3 0 chrX 26205817 26206119 -136393811 - AluSp SINE Alu -10 303 1 723 233 7 7 chrX 26206207 26206353 -136393577 - FRAM SINE Alu -30 146 1 400 328 64 23 chrX 26206353 26206524 -136393406 + MIR SINE MIR 77 254 -8 186 273 0 18 chrX 26206550 26206605 -136393325 - MIR SINE MIR -130 132 79 312 102 0 0 chrX 26206932 26206981 -136392949 + (CA)n Simple_repeat Simple_repeat 2 50 0 2282 97 0 28 chrX 26208178 26208499 -136391431 + AluSx SINE Alu 1 312 0 318 358 45 0 chrX 26209228 26209404 -136390526 - MLT1I LTR MaLR 0 409 226 2361 144 53 10 chrX 26209600 26210011 -136389919 - MSTB1 LTR MaLR 0 432 4 1843 199 40 0 chrX 26210298 26210649 -136389281 - MLT1A1 LTR MaLR 0 365 1 331 301 135 0 chrX 26210679 26210812 -136389118 - MIR SINE MIR 0 262 112 26 64 0 0 chrX 26211871 26211918 -136388012 + AT_rich Low_complexity Low_complexity 1 47 0 1867 219 31 11 chrX 26211929 26212382 -136387548 + L1MC4a LINE L1 7342 7803 -5 2151 88 27 20 chrX 26212391 26212685 -136387245 - AluSx SINE Alu -16 296 1 25 0 0 0 chrX 26212747 26212772 -136387158 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrX 26212871 26212895 -136387035 + AT_rich Low_complexity Low_complexity 1 24 0 2871 176 64 4 chrX 26213079 26213596 -136386334 + MER44D DNA MER2_type 1 603 -2 2385 107 0 0 chrX 26214013 26214323 -136385607 + AluSq SINE Alu 1 310 -3 2253 106 0 7 chrX 26214420 26214721 -136385209 - AluSx SINE Alu -13 299 1 2379 271 76 32 chrX 26215146 26216230 -136383700 + L2 LINE L2 2095 3237 -76 198 256 17 8 chrX 26217745 26217862 -136382068 + (TA)n Simple_repeat Simple_repeat 1 118 0 21 36 0 0 chrX 26218917 26218945 -136380985 + AT_rich Low_complexity Low_complexity 1 28 0 238 290 29 0 chrX 26219312 26219381 -136380549 - MIR SINE MIR -91 117 47 325 302 26 57 chrX 26219585 26219777 -136380153 + MIR SINE MIR 3 188 -74 335 290 56 0 chrX 26219838 26219945 -136379985 - L2 LINE L2 -10 3303 3191 187 348 44 63 chrX 26220276 26220334 -136379596 - MIR SINE MIR -79 183 125 2507 78 0 0 chrX 26220334 26220643 -136379287 + AluSg SINE Alu 1 309 -1 187 348 44 63 chrX 26220643 26220742 -136379188 - MIR SINE MIR -137 125 29 195 42 0 0 chrX 26220828 26220852 -136379078 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1312 333 19 2 chrX 26221140 26221554 -136378376 - LTR16C LTR ERVL -2 489 69 2521 107 6 11 chrX 26221655 26222021 -136377909 - THE1B LTR MaLR 0 364 1 2287 196 34 40 chrX 26222594 26223095 -136376835 - MLT1D LTR MaLR -7 498 1 2307 92 7 0 chrX 26223950 26224243 -136375687 + AluSx SINE Alu 1 295 -17 263 272 117 10 chrX 26224559 26224662 -136375268 - MIR SINE MIR -72 190 77 2189 102 19 32 chrX 26224688 26225002 -136374928 - AluSq SINE Alu -1 312 3 44 99 0 0 chrX 26225589 26225731 -136374199 + AT_rich Low_complexity Low_complexity 1 142 0 295 317 10 10 chrX 26225786 26225887 -136374043 - MIR SINE MIR -131 131 31 1001 336 28 7 chrX 26226610 26227032 -136372898 - L2 LINE L2 -2440 874 444 532 305 65 5 chrX 26227342 26227542 -136372388 + MIR SINE MIR 51 262 0 1994 119 3 20 chrX 26228068 26228370 -136371560 - AluSx SINE Alu -13 299 3 434 132 13 0 chrX 26228603 26228679 -136371251 + CT-rich Low_complexity Low_complexity 2 78 0 650 119 0 0 chrX 26228682 26228783 -136371147 - AluSp/q SINE Alu -3 310 210 22 0 0 0 chrX 26228830 26228852 -136371078 + AT_rich Low_complexity Low_complexity 1 22 0 2077 97 57 0 chrX 26229424 26229703 -136370227 - AluSp SINE Alu -18 295 1 22 56 0 0 chrX 26229988 26230024 -136369906 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chrX 26230071 26230092 -136369838 + AT_rich Low_complexity Low_complexity 1 21 0 374 324 35 7 chrX 26230301 26230446 -136369484 - L2 LINE L2 -1 3312 3164 2198 86 3 23 chrX 26230464 26230766 -136369164 + AluSx SINE Alu 1 296 -16 5429 48 1 0 chrX 26231401 26232090 -136367840 + L1PA8 LINE L1 5494 6183 0 303 263 46 23 chrX 26232137 26232312 -136367618 - Charlie7 DNA MER1_type 0 2612 2434 2413 87 0 3 chrX 26232484 26232795 -136367135 + AluSg SINE Alu 1 310 0 492 204 0 29 chrX 26232983 26233086 -136366844 - MER5A DNA MER1_type -81 108 9 201 302 125 10 chrX 26233228 26233324 -136366606 - L2 LINE L2 -643 2671 2565 268 255 99 43 chrX 26233916 26234057 -136365873 + L2 LINE L2 3159 3307 -6 201 267 0 0 chrX 26234101 26234146 -136365784 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 252 122 0 0 chrX 26234491 26234532 -136365398 + (TG)n Simple_repeat Simple_repeat 2 42 0 2252 118 0 6 chrX 26234729 26235044 -136364886 + AluSq SINE Alu 1 313 0 352 360 45 11 chrX 26235224 26235402 -136364528 - MIR3 SINE MIR -6 202 19 239 337 97 63 chrX 26236128 26236863 -136363067 + L2 LINE L2 2525 3298 -15 229 146 0 36 chrX 26237003 26237058 -136362872 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 2768 146 19 10 chrX 26237744 26238258 -136361672 - L1MA6 LINE L1 0 6300 5782 325 139 30 30 chrX 26238274 26238375 -136361555 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 575 182 0 51 chrX 26238390 26238703 -136361227 + (TATATG)n Simple_repeat Simple_repeat 1 297 0 1753 97 35 0 chrX 26238726 26238984 -136360946 - L1MA6 LINE L1 -507 5793 5527 25 0 0 0 chrX 26239585 26239610 -136360320 + AT_rich Low_complexity Low_complexity 1 25 0 2282 86 31 0 chrX 26240687 26240978 -136358952 - AluSx SINE Alu -10 302 3 609 241 45 0 chrX 26241978 26242111 -136357819 + MER5A DNA MER1_type 1 139 -50 326 276 98 18 chrX 26242123 26242286 -136357644 - L1MA9 LINE L1 -38 6274 6099 240 139 0 0 chrX 26242286 26242322 -136357608 + MER5A DNA MER1_type 139 174 -15 251 301 19 19 chrX 26242749 26242852 -136357078 - MER5B DNA MER1_type -2 176 74 2251 78 3 14 chrX 26243618 26243913 -136356017 - AluSp SINE Alu -18 295 4 2457 71 0 3 chrX 26244486 26244795 -136355135 + AluY SINE Alu 3 310 -1 2324 108 0 3 chrX 26245257 26245563 -136354367 + AluSg SINE Alu 1 305 -5 856 201 5 57 chrX 26245657 26245778 -136354152 - MER5A DNA MER1_type -1 188 79 2076 66 0 52 chrX 26245778 26246066 -136353864 - AluY SINE Alu -4 307 35 856 201 5 57 chrX 26246066 26246138 -136353792 - MER5A DNA MER1_type -110 79 5 8297 43 0 1 chrX 26247291 26249081 -136350849 - L1PA6 LINE L1 -4 6150 4361 680 194 133 41 chrX 26249140 26249336 -136350594 + MLT1D LTR MaLR 1 214 -291 523 198 198 0 chrX 26249523 26249644 -136350286 - MER5A DNA MER1_type 0 189 45 26 0 0 0 chrX 26249973 26249999 -136349931 + AT_rich Low_complexity Low_complexity 1 26 0 2181 115 0 0 chrX 26250061 26250369 -136349561 - AluSq SINE Alu 0 308 1 430 274 35 20 chrX 26250799 26250948 -136348982 + MIR SINE MIR 67 218 -44 435 283 42 8 chrX 26251261 26251381 -136348549 - L2 LINE L2 -4 3309 3186 1429 174 31 79 chrX 26251607 26251924 -136348006 + MER21B LTR ERV1 13 314 -549 749 319 40 35 chrX 26252041 26252391 -136347539 - MER20B DNA MER1_type -314 469 115 2226 149 144 7 chrX 26252391 26252835 -136347095 + MLT1D LTR MaLR 1 505 0 749 319 40 35 chrX 26252835 26252935 -136346995 - MER20B DNA MER1_type -668 115 17 230 389 78 32 chrX 26252945 26253354 -136346576 + L2 LINE L2 2550 2977 -337 180 0 0 0 chrX 26253374 26253394 -136346536 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 2086 129 0 0 chrX 26253399 26253686 -136346244 - AluSq SINE Alu -26 287 1 242 354 41 14 chrX 26253870 26254017 -136345913 + L2 LINE L2 3162 3312 -1 2060 131 0 0 chrX 26254192 26254489 -136345441 - AluSx SINE Alu -11 301 5 21 0 0 0 chrX 26254819 26254840 -136345090 + AT_rich Low_complexity Low_complexity 1 21 0 667 320 54 0 chrX 26255018 26255240 -136344690 + MIR SINE MIR 25 258 -4 1776 90 60 8 chrX 26256564 26256830 -136343100 + L1PA11 LINE L1 5893 6172 -2 1313 269 97 7 chrX 26256978 26257402 -136342528 - LTR40b LTR ERVL 0 462 1 2207 105 7 0 chrX 26258278 26258572 -136341358 - AluSg SINE Alu -11 299 4 349 327 96 40 chrX 26258905 26259104 -136340826 + MIR SINE MIR 20 229 -33 677 292 69 4 chrX 26259652 26259885 -136340045 + MIR SINE MIR 13 260 -2 22 56 0 0 chrX 26260523 26260559 -136339371 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chrX 26260919 26260949 -136338981 + AT_rich Low_complexity Low_complexity 1 30 0 1048 252 30 27 chrX 26263316 26263645 -136336285 + L1MD2 LINE L1 6012 6341 -18 292 320 33 40 chrX 26264142 26264292 -136335638 - L2 LINE L2 -3 3310 3162 270 300 108 31 chrX 26264606 26264736 -136335194 - MIR3 SINE MIR -39 169 30 197 205 60 133 chrX 26264841 26264924 -136335006 - L2 LINE L2 -9 3263 3187 2403 76 0 3 chrX 26265250 26265553 -136334377 - AluSx SINE Alu -10 302 1 220 163 47 0 chrX 26266529 26266572 -136333358 + (CTATA)n Simple_repeat Simple_repeat 4 48 0 2382 90 0 0 chrX 26267400 26267701 -136332229 - AluSp SINE Alu -12 301 1 605 292 107 52 chrX 26267719 26267977 -136331953 + L3 LINE CR1 625 910 -667 2241 117 3 0 chrX 26267977 26268286 -136331644 - AluSg SINE Alu 0 310 1 605 292 107 52 chrX 26268286 26268390 -136331540 + L3 LINE CR1 910 1007 -570 253 282 165 59 chrX 26268400 26268570 -136331360 - MER5A DNA MER1_type 0 189 2 2005 133 36 21 chrX 26269145 26269476 -136330454 - MER1B DNA MER1_type -1 336 1 1609 70 0 5 chrX 26270513 26270728 -136329202 - L1PA13 LINE L1 0 6163 5950 39 38 0 38 chrX 26270966 26271045 -136328885 + AT_rich Low_complexity Low_complexity 1 76 0 2337 76 0 10 chrX 26271386 26271687 -136328243 - AluSp SINE Alu -15 298 1 672 254 51 30 chrX 26271745 26271795 -136328135 - MER67D LTR ERV1 0 514 467 5778 128 12 1 chrX 26271795 26272720 -136327210 + L1PA15 LINE L1 5229 6163 -2 672 254 51 30 chrX 26272720 26272962 -136326968 - MER67D LTR ERV1 -47 467 215 5233 130 22 61 chrX 26272962 26273173 -136326757 - L1MA4 LINE L1 -8 6292 6074 1965 78 8 0 chrX 26273173 26273415 -136326515 + AluSp SINE Alu 43 286 -27 351 0 0 0 chrX 26273415 26273454 -136326476 + (TA)n Simple_repeat Simple_repeat 1 39 0 5233 130 22 61 chrX 26273454 26274273 -136325657 - L1MA4 LINE L1 -224 6076 5301 363 172 86 0 chrX 26274416 26274509 -136325421 - L1MA4 LINE L1 -865 5281 5181 1195 236 110 9 chrX 26274509 26274836 -136325094 - MER67B LTR ERV1 -301 360 1 457 147 13 0 chrX 26274840 26274915 -136325015 - MER31B LTR ERV1 -390 76 1 696 309 51 0 chrX 26275184 26275401 -136324529 + MIR SINE MIR 29 256 -6 2141 97 0 34 chrX 26275404 26275735 -136324195 - AluSg SINE Alu 0 321 1 2298 62 0 0 chrX 26278122 26278398 -136321532 + AluY SINE Alu 1 276 -35 261 0 0 0 chrX 26278401 26278430 -136321500 + (TAA)n Simple_repeat Simple_repeat 2 30 0 308 333 11 0 chrX 26278620 26278754 -136321176 - MIR SINE MIR -63 145 20 245 254 18 0 chrX 26279236 26279291 -136320639 - MER91A DNA MER1_type -136 60 5 493 310 45 19 chrX 26279299 26279581 -136320349 - L1P4 LINE L1 -364 5797 5508 360 94 0 0 chrX 26280782 26280835 -136319095 + (GA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chrX 26280867 26280888 -136319042 + AT_rich Low_complexity Low_complexity 1 21 0 1550 308 98 34 chrX 26281525 26281914 -136318016 + L2 LINE L2 2094 2456 -857 2206 148 13 80 chrX 26281914 26282009 -136317921 - Tigger2a DNA MER2_type -2274 434 334 2238 106 0 0 chrX 26282009 26282301 -136317629 - AluSx SINE Alu -20 292 1 2206 148 13 80 chrX 26282301 26282670 -136317260 - Tigger2a DNA MER2_type -2374 334 1 1550 308 98 34 chrX 26282670 26282690 -136317240 + L2 LINE L2 2456 2473 -840 2351 90 3 0 chrX 26282690 26282990 -136316940 - AluSp SINE Alu -12 301 1 1550 308 98 34 chrX 26282990 26283733 -136316197 + L2 LINE L2 2473 3313 0 594 262 45 24 chrX 26283929 26284219 -136315711 + L1MC5 LINE L1 7613 7908 -53 23 78 0 0 chrX 26284673 26284724 -136315206 + AT_rich Low_complexity Low_complexity 1 51 0 2283 72 27 10 chrX 26284758 26285050 -136314880 + AluSx SINE Alu 1 297 -15 1949 156 0 16 chrX 26285873 26286187 -136313743 - AluJb SINE Alu -3 309 1 633 289 31 18 chrX 26286418 26286646 -136313284 - LTR40b LTR ERVL -39 423 193 387 245 10 10 chrX 26286897 26286999 -136312931 + MER112 DNA MER1_type 159 260 0 192 343 0 27 chrX 26287021 26287094 -136312836 - L2 LINE L2 -4 3268 3198 198 0 0 0 chrX 26287449 26287471 -136312459 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 369 0 0 0 chrX 26287470 26287511 -136312419 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 376 112 0 chrX 26288807 26288932 -136310998 - MIR3 SINE MIR -23 185 47 275 276 40 0 chrX 26289001 26289077 -136310853 - L2 LINE L2 -8 3305 3227 453 388 39 12 chrX 26289262 26289520 -136310410 + L2 LINE L2 2594 2858 -456 556 260 0 8 chrX 26290470 26290597 -136309333 - MER5B DNA MER1_type 0 178 53 1310 127 9 38 chrX 26290599 26290811 -136309119 - AluSg/x SINE Alu -7 305 100 546 16 0 0 chrX 26291303 26291366 -136308564 + (CA)n Simple_repeat Simple_repeat 2 64 0 2258 76 10 26 chrX 26291423 26291727 -136308203 + AluSg SINE Alu 1 299 -11 301 203 40 14 chrX 26291856 26291930 -136308000 + MARNA DNA Mariner 320 395 -191 354 283 71 9 chrX 26292066 26292179 -136307751 + L2 LINE L2 3190 3309 -4 1044 244 72 26 chrX 26292978 26293240 -136306690 + Charlie4a DNA MER1_type 76 363 -1598 2267 105 0 0 chrX 26293240 26293535 -136306395 - AluSg SINE Alu -15 295 1 1044 244 72 26 chrX 26293535 26293661 -136306269 + Charlie4a DNA MER1_type 363 482 -26 326 260 226 34 chrX 26295096 26295185 -136304745 - MER5A DNA MER1_type 0 189 118 2309 163 66 42 chrX 26295185 26295687 -136304243 - MER67D LTR ERV1 0 514 1 326 260 226 34 chrX 26295687 26295743 -136304187 - MER5A DNA MER1_type -71 118 16 2080 99 44 10 chrX 26296124 26296418 -136303512 - AluSq SINE Alu 0 313 10 24 53 0 0 chrX 26297357 26297395 -136302535 + AT_rich Low_complexity Low_complexity 1 38 0 219 333 33 0 chrX 26297597 26297687 -136302243 - MIR SINE MIR -167 95 3 429 70 0 0 chrX 26297860 26297917 -136302013 + (CA)n Simple_repeat Simple_repeat 2 58 0 369 0 0 0 chrX 26298025 26298066 -136301864 + (TG)n Simple_repeat Simple_repeat 1 41 0 2207 93 0 0 chrX 26298066 26298345 -136301585 - AluSg SINE Alu -31 279 1 391 250 23 45 chrX 26298366 26298542 -136301388 - L1MC5 LINE L1 -438 7523 7352 21 0 0 0 chrX 26299087 26299108 -136300822 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chrX 26300197 26300228 -136299702 + (A)n Simple_repeat Simple_repeat 1 31 0 214 365 120 24 chrX 26301314 26301481 -136298449 - MER5A DNA MER1_type -6 183 1 25 102 0 0 chrX 26301818 26301906 -136298024 + AT_rich Low_complexity Low_complexity 1 88 0 2149 124 0 9 chrX 26302476 26302791 -136297139 - AluSx SINE Alu 0 312 1 2126 208 36 72 chrX 26303259 26303900 -136296030 + MLT1E1 LTR MaLR 1 518 -37 309 122 20 0 chrX 26303947 26303996 -136295934 + MLT1E1 LTR MaLR 542 591 -2 223 304 64 48 chrX 26303999 26304124 -136295806 + L2 LINE L2 2589 2715 -599 219 229 110 59 chrX 26304149 26304267 -136295663 + L2 LINE L2 3190 3313 0 337 347 48 8 chrX 26304358 26304606 -136295324 + MIR SINE MIR 5 262 0 224 275 82 45 chrX 26304692 26304847 -136295083 + MIR SINE MIR 25 181 -62 2356 55 9 61 chrX 26306194 26306561 -136293369 - AluY SINE Alu 0 350 1 25 51 0 0 chrX 26309018 26309057 -136290873 + AT_rich Low_complexity Low_complexity 1 39 0 1720 200 73 75 chrX 26309128 26309305 -136290625 - MLT1D LTR MaLR 0 505 329 1665 75 26 18 chrX 26309305 26309533 -136290397 - MER30 DNA MER1_type 0 230 1 1720 200 73 75 chrX 26309533 26309861 -136290069 - MLT1D LTR MaLR -176 329 1 294 176 0 0 chrX 26309867 26309917 -136290013 + (TA)n Simple_repeat Simple_repeat 1 53 -15 2475 77 0 0 chrX 26309917 26310227 -136289703 - AluSx SINE Alu -2 310 1 294 176 0 0 chrX 26310227 26310244 -136289686 + (TA)n Simple_repeat Simple_repeat 52 68 0 292 357 50 21 chrX 26310979 26311175 -136288755 + MIR3 SINE MIR 6 208 0 222 295 34 67 chrX 26311607 26311756 -136288174 - MIR3 SINE MIR -7 201 58 302 281 44 56 chrX 26311886 26312107 -136287823 - MIR SINE MIR -2 260 2 230 262 16 16 chrX 26312235 26312296 -136287634 - L2 LINE L2 -2 3311 3251 529 288 73 30 chrX 26312378 26312625 -136287305 - MIR SINE MIR -2 260 4 325 252 142 25 chrX 26313078 26313200 -136286730 - MER88 LTR ERVL -250 214 102 250 243 14 29 chrX 26313143 26313213 -136286717 + MER74B LTR ERVL 482 550 -72 * 247 266 16 0 chrX 26313616 26313680 -136286250 + CT-rich Low_complexity Low_complexity 4 68 0 6863 44 3 0 chrX 26314504 26315575 -136284355 - L1PA7 LINE L1 -1 6153 5047 225 0 0 0 chrX 26315843 26315868 -136284062 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chrX 26317128 26317151 -136282779 + AT_rich Low_complexity Low_complexity 1 23 0 2214 101 7 0 chrX 26317196 26317483 -136282447 + AluSg SINE Alu 1 289 -21 1989 136 0 23 chrX 26317826 26318134 -136281796 + AluSx SINE Alu 1 301 -11 524 293 147 51 chrX 26318165 26318771 -136281159 + L1MC4a LINE L1 5268 5933 -1875 301 236 16 118 chrX 26320948 26321075 -136278855 - L2 LINE L2 0 3313 3200 247 289 12 0 chrX 26321156 26321239 -136278691 + (TA)n Simple_repeat Simple_repeat 1 84 0 336 323 115 22 chrX 26321249 26321475 -136278455 - L2 LINE L2 -250 3063 2817 3415 32 0 0 chrX 26321568 26321971 -136277959 + L1PA3 LINE L1 5753 6155 0 412 262 16 16 chrX 26323209 26323335 -136276595 - MIR SINE MIR -33 229 104 236 102 51 17 chrX 26324145 26324204 -136275726 + GA-rich Low_complexity Low_complexity 1 61 0 357 24 0 0 chrX 26324816 26324858 -136275072 + (TG)n Simple_repeat Simple_repeat 1 42 0 4560 146 5 5 chrX 26325149 26325898 -136274032 - L1PA16 LINE L1 -11 6155 5407 22 0 0 0 chrX 26325949 26325971 -136273959 + AT_rich Low_complexity Low_complexity 1 22 0 209 300 100 0 chrX 26326243 26326303 -136273627 + MIR SINE MIR 116 181 -81 207 139 0 0 chrX 26326405 26326441 -136273489 + (ATG)n Simple_repeat Simple_repeat 1 36 0 297 296 118 12 chrX 26326441 26326610 -136273320 - MIR SINE MIR -1 261 75 346 107 0 0 chrX 26327912 26327968 -136271962 + L1MA4A LINE L1 6234 6289 -14 23 54 0 0 chrX 26329070 26329107 -136270823 + AT_rich Low_complexity Low_complexity 1 37 0 2322 135 22 0 chrX 26329970 26330326 -136269604 - THE1B LTR MaLR 0 364 1 386 174 47 41 chrX 26330566 26330738 -136269192 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 227 357 50 0 chrX 26331093 26331233 -136268697 + L2 LINE L2 2342 2488 -826 443 351 71 19 chrX 26331400 26331722 -136268208 + L2 LINE L2 2938 3276 -37 345 279 285 0 chrX 26331739 26331911 -136268019 + MIR SINE MIR 42 262 0 2070 122 7 0 chrX 26332075 26332371 -136267559 + AluSp SINE Alu 1 298 -15 233 250 52 73 chrX 26332811 26332907 -136267023 + L2 LINE L2 3134 3227 -86 255 152 0 0 chrX 26333524 26333570 -136266360 + CT-rich Low_complexity Low_complexity 1 46 0 45 62 0 0 chrX 26334277 26334357 -136265573 + AT_rich Low_complexity Low_complexity 1 80 0 324 200 20 50 chrX 26334502 26334602 -136265328 - L1M4 LINE L1 -2892 3254 3158 2201 96 3 3 chrX 26334603 26334905 -136265025 - AluSq SINE Alu -11 302 1 29 84 0 0 chrX 26334948 26335019 -136264911 + AT_rich Low_complexity Low_complexity 1 71 0 3231 27 0 0 chrX 26335166 26335541 -136264389 - L1PA3 LINE L1 -3 6152 5778 3527 24 10 0 chrX 26335550 26335963 -136263967 + L1PA3 LINE L1 5384 5800 -355 198 143 0 0 chrX 26337153 26337188 -136262742 + (CA)n Simple_repeat Simple_repeat 2 36 0 233 218 55 18 chrX 26338448 26338503 -136261427 + L2 LINE L2 3207 3263 -9 382 290 30 0 chrX 26339334 26339434 -136260496 + L2 LINE L2 2589 2691 -623 1889 218 59 21 chrX 26339451 26339975 -136259955 - L1ME1 LINE L1 -5 6161 5618 1708 253 61 19 chrX 26339972 26340546 -136259384 - L1ME1 LINE L1 -995 5151 4554 * 6293 110 6 57 chrX 26340549 26342006 -136257924 - L1PA15 LINE L1 -4 6161 4742 5614 205 37 8 chrX 26342095 26343489 -136256441 - L1PA13 LINE L1 -4245 2552 1112 583 107 0 74 chrX 26343579 26343700 -136256230 + L1MA9 LINE L1 6201 6312 0 384 372 106 12 chrX 26344457 26344798 -136255132 + L2 LINE L2 2361 2733 -581 872 194 16 37 chrX 26344829 26345020 -136254910 + MER5A DNA MER1_type 1 187 -2 200 267 0 0 chrX 26346281 26346326 -136253604 - L2 LINE L2 -4 3309 3265 756 214 0 0 chrX 26346375 26346506 -136253424 - FLAM_A SINE Alu -1 132 2 264 161 54 0 chrX 26346515 26346608 -136253322 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 2028 108 30 59 chrX 26347380 26347751 -136252179 - MER46B DNA MER2_type 0 236 2 305 267 22 59 chrX 26348606 26348741 -136251189 + L1MC4 LINE L1 7824 7953 -89 2303 89 3 0 chrX 26348849 26349142 -136250788 + AluSg SINE Alu 1 294 -16 204 97 0 0 chrX 26350277 26350308 -136249622 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 655 278 156 7 chrX 26350334 26350629 -136249301 - L2 LINE L2 -43 3270 2932 188 191 0 24 chrX 26350672 26350714 -136249216 + MIR SINE MIR 222 262 0 757 207 70 115 chrX 26351374 26351493 -136248437 - LTR41 LTR ERVL -6 767 644 1678 178 26 59 chrX 26351493 26351880 -136248050 - MLT1A2 LTR MaLR 0 374 1 757 207 70 115 chrX 26351880 26352074 -136247856 - LTR41 LTR ERVL -129 644 468 467 250 189 0 chrX 26552144 26552292 -136047638 + L2 LINE L2 2190 2365 -949 780 353 74 18 chrX 26552299 26552835 -136047095 + L2 LINE L2 2475 3042 -271 584 343 53 4 chrX 26552834 26553079 -136046851 + MIR SINE MIR 6 262 0 * 35 24 0 0 chrX 26553178 26553220 -136046710 + AT_rich Low_complexity Low_complexity 1 42 0 599 234 8 0 chrX 26553257 26553381 -136046549 + L2 LINE L2 3186 3310 -3 2486 68 0 0 chrX 26553784 26554095 -136045835 + AluY SINE Alu 1 311 0 25 0 0 0 chrX 26554199 26554224 -136045706 + AT_rich Low_complexity Low_complexity 1 25 0 2331 71 0 43 chrX 26555175 26555500 -136044430 + AluY SINE Alu 1 311 0 26 52 0 17 chrX 26555531 26555545 -136044385 + AT_rich Low_complexity Low_complexity 1 14 -43 2078 69 3 100 chrX 26555545 26555865 -136044065 + AluSq SINE Alu 1 289 -24 26 52 0 17 chrX 26555865 26555908 -136044022 + AT_rich Low_complexity Low_complexity 14 57 0 1965 162 31 11 chrX 26556328 26556680 -136043250 - MLT1A1 LTR MaLR -6 359 1 2488 63 7 0 chrX 26557288 26557590 -136042340 - AluSp SINE Alu -9 304 1 1904 215 26 21 chrX 26557864 26558329 -136041601 + MLT1C LTR MaLR 1 467 0 1883 178 14 17 chrX 26558586 26558935 -136040995 + MER7A DNA MER2_type 1 346 0 334 313 140 44 chrX 26559451 26559952 -136039978 + L1 LINE L1 3176 3724 -2422 2263 143 34 31 chrX 26560084 26560502 -136039428 - MSTB1 LTR MaLR -13 419 1 313 354 69 22 chrX 26560543 26560820 -136039110 - L1 LINE L1 -1446 4700 4411 226 200 40 0 chrX 26561122 26561172 -136038758 - L1 LINE L1 -3429 2717 2666 3859 140 10 2 chrX 26561177 26561791 -136038139 + L1PB4 LINE L1 5436 6054 -102 8940 101 19 3 chrX 26561800 26563033 -136036897 + HSMAR1 DNA Mariner 4 1255 -32 365 119 0 45 chrX 26563035 26563102 -136036828 + L1PA16 LINE L1 6087 6150 -16 520 298 148 45 chrX 26563178 26563597 -136036333 - L1 LINE L1 -3572 2574 2113 1578 199 115 21 chrX 26563889 26564367 -136035563 + Charlie1b DNA MER1_type 1 523 0 1125 77 26 0 chrX 26564939 26565094 -136034836 - L1MA3 LINE L1 -1 6304 6146 21 0 0 0 chrX 26565698 26565719 -136034211 + AT_rich Low_complexity Low_complexity 1 21 0 231 310 20 42 chrX 26566069 26566186 -136033744 + MIR SINE MIR 22 141 -67 31 58 0 0 chrX 26566527 26566579 -136033351 + AT_rich Low_complexity Low_complexity 1 52 0 421 171 0 0 chrX 26566728 26566798 -136033132 + AluJb SINE Alu 1 70 -242 1469 143 0 9 chrX 26566836 26567067 -136032863 + AluJb SINE Alu 73 301 -11 420 254 15 62 chrX 26567319 26567449 -136032481 - L2 LINE L2 0 3313 3190 5290 112 45 2 chrX 26568158 26568961 -136030969 - L1PA14 LINE L1 0 6161 5325 2244 72 7 0 chrX 26568969 26569247 -136030683 - AluSp SINE Alu -16 297 18 1874 73 44 0 chrX 26569247 26569522 -136030408 + L1MA5 LINE L1 6012 6298 -2 2630 175 13 0 chrX 26569555 26570029 -136029901 + L1MA8 LINE L1 5591 6070 -221 2155 106 7 3 chrX 26570066 26570359 -136029571 + AluSq SINE Alu 1 294 -19 380 324 35 12 chrX 26570578 26570751 -136029179 + MER69A DNA AcHobo 1 177 0 800 259 10 0 chrX 26571701 26571894 -136028036 - L2 LINE L2 -983 2331 2137 23 0 0 0 chrX 26572623 26572646 -136027284 + AT_rich Low_complexity Low_complexity 1 23 0 2280 146 26 81 chrX 26574524 26575031 -136024899 - L1MB2 LINE L1 0 6171 5693 264 301 57 67 chrX 26575036 26575053 -136024877 + MER20 DNA MER1_type 7 23 -196 2529 70 21 49 chrX 26575053 26575439 -136024491 + THE1C LTR MaLR 1 375 0 264 301 57 67 chrX 26575439 26575630 -136024300 + MER20 DNA MER1_type 23 213 -6 568 248 80 118 chrX 26575834 26576129 -136023801 + MER34 LTR ERV1 1 306 -236 2122 136 128 10 chrX 26576129 26576512 -136023418 + MSTA LTR MaLR 1 428 0 568 248 80 118 chrX 26576512 26576670 -136023260 + MER34 LTR ERV1 306 432 -110 2285 98 3 0 chrX 26576670 26576967 -136022963 + AluSq SINE Alu 1 298 -15 568 248 80 118 chrX 26576967 26577072 -136022858 + MER34 LTR ERV1 432 539 -3 303 250 65 28 chrX 26577437 26577545 -136022385 - L1ME3A LINE L1 -214 5956 5845 1272 168 135 51 chrX 26577739 26577917 -136022013 + LTR37A LTR ERV1 1 163 -263 396 0 0 0 chrX 26577917 26577961 -136021969 + (CA)n Simple_repeat Simple_repeat 2 45 0 1272 168 135 51 chrX 26577961 26578175 -136021755 + LTR37A LTR ERV1 163 426 0 216 97 0 0 chrX 26578636 26578667 -136021263 + (CA)n Simple_repeat Simple_repeat 2 32 0 47 73 0 0 chrX 26579255 26579351 -136020579 + AT_rich Low_complexity Low_complexity 1 96 0 2259 113 0 3 chrX 26579403 26579714 -136020216 - AluSq SINE Alu -3 310 1 37 62 0 0 chrX 26579759 26579824 -136020106 + AT_rich Low_complexity Low_complexity 1 65 0 13809 44 2 5 chrX 26580085 26582573 -136017357 - L1PA5 LINE L1 -3 6151 3666 450 175 3 37 chrX 26582843 26582968 -136016962 + L1M3 LINE L1 5236 5359 -787 269 316 13 0 chrX 26583031 26583110 -136016820 + MER82 DNA MER2_type 48 127 -526 8143 132 35 11 chrX 26583110 26584505 -136015425 - Ricksha DNA DNA -39 3207 1821 1726 156 3 3 chrX 26584503 26584785 -136015145 - Ricksha DNA DNA -966 288 7 * 1542 169 0 22 chrX 26584787 26585065 -136014865 + L1M3 LINE L1 5345 5616 -567 693 260 97 50 chrX 26585065 26585404 -136014526 - LTR16C LTR ERVL -23 468 114 224 261 91 11 chrX 26586033 26586121 -136013809 + MIR3 SINE MIR 105 199 -9 252 149 68 0 chrX 26586494 26586568 -136013362 + (TA)n Simple_repeat Simple_repeat 1 79 0 761 191 105 34 chrX 26587689 26587898 -136012032 - MER58A DNA MER1_type 0 224 1 264 289 106 10 chrX 26588100 26588204 -136011726 + MIR SINE MIR 99 212 -50 5893 96 8 9 chrX 26588459 26589313 -136010617 - L1PA15 LINE L1 -2 6163 5311 6843 205 37 33 chrX 26589489 26590453 -136009477 + L1MA8 LINE L1 3190 4148 -2143 1664 185 11 0 chrX 26590453 26590729 -136009201 + AluJb SINE Alu 1 279 -33 189 0 0 0 chrX 26590733 26590754 -136009176 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6843 205 37 33 chrX 26590754 26591849 -136008081 + L1MA8 LINE L1 4150 5291 -1000 2055 118 0 55 chrX 26591849 26592179 -136007751 + AluSx SINE Alu 1 312 0 6843 205 37 33 chrX 26592179 26593179 -136006751 + L1MA8 LINE L1 5291 6285 -6 233 189 0 0 chrX 26593192 26593245 -136006685 + L1MB4 LINE L1 6127 6179 -1 234 320 62 23 chrX 26593258 26593386 -136006544 + MIR SINE MIR 20 152 -110 7149 149 12 8 chrX 26593392 26594850 -136005080 - L1PA15 LINE L1 -1 6164 4696 291 28 0 0 chrX 26594850 26594886 -136005044 + (TTC)n Simple_repeat Simple_repeat 2 37 0 7149 149 12 8 chrX 26594886 26595597 -136004333 - L1PA15 LINE L1 -1469 4696 3989 2215 30 0 0 chrX 26595814 26596077 -136003853 + L1PA4 LINE L1 5893 6155 0 2245 181 55 4 chrX 26596091 26596802 -136003128 - L1M3 LINE L1 -544 5639 4887 22 35 0 0 chrX 26596810 26596839 -136003091 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 26598769 26598792 -136001138 + AT_rich Low_complexity Low_complexity 1 23 0 398 313 88 9 chrX 26599070 26599407 -136000523 - L1ME4a LINE L1 -216 5905 5523 2217 113 0 16 chrX 26599749 26600060 -135999870 - AluSg SINE Alu -4 306 1 24557 101 7 12 chrX 26601890 26605812 -135994118 - L1P3 LINE L1 -1770 4691 763 576 311 56 20 chrX 26605816 26606173 -135993757 - L1MC/D LINE L1 -1988 5820 5451 292 252 14 35 chrX 26606176 26606319 -135993611 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 2983 198 15 65 chrX 26606341 26607018 -135992912 - MER82 DNA MER2_type -10 643 1 1587 31 5 0 chrX 26607133 26607327 -135992603 - L1PA4 LINE L1 -3 6152 5958 412 214 16 8 chrX 26607348 26607474 -135992456 + L1M4 LINE L1 5100 5226 -920 270 0 0 0 chrX 26607489 26607519 -135992411 + (TG)n Simple_repeat Simple_repeat 2 31 0 3170 81 25 0 chrX 26607636 26608107 -135991823 + L1P LINE L1 3530 4012 -2134 394 312 26 64 chrX 26608138 26608372 -135991558 - L1MEd LINE L1 -2580 3549 3325 4885 158 43 14 chrX 26608378 26609348 -135990582 - L1MB2 LINE L1 0 6171 5172 373 191 247 12 chrX 26609482 26609644 -135990286 - L1MEd LINE L1 -2920 3209 3010 333 262 159 24 chrX 26609813 26610065 -135989865 - L1MEd LINE L1 -4908 1211 926 22 0 0 0 chrX 26610078 26610100 -135989830 + AT_rich Low_complexity Low_complexity 1 22 0 237 33 0 0 chrX 26610145 26610175 -135989755 + (TTG)n Simple_repeat Simple_repeat 2 31 0 420 364 20 54 chrX 26610219 26610516 -135989414 - L1MEd LINE L1 -5730 389 103 867 125 7 0 chrX 26610639 26610783 -135989147 + L1MA4A LINE L1 6147 6291 -12 222 357 71 0 chrX 26611036 26611162 -135988768 + L3 LINE CR1 940 1074 -503 569 330 115 3 chrX 26611195 26611543 -135988387 + L3 LINE CR1 1190 1576 -1 2822 150 17 9 chrX 26612028 26612489 -135987441 + MLT1C LTR MaLR 3 467 0 24 0 0 0 chrX 26612967 26612991 -135986939 + AT_rich Low_complexity Low_complexity 1 24 0 357 286 173 1 chrX 26613305 26613504 -135986426 + MIR SINE MIR 34 262 0 2536 172 36 12 chrX 26613668 26614161 -135985769 + MLT1D LTR MaLR 1 505 0 1208 248 94 64 chrX 26614190 26614722 -135985208 - MLT1H LTR MaLR -1 548 1 29 0 0 0 chrX 26615639 26615668 -135984262 + AT_rich Low_complexity Low_complexity 1 29 0 297 206 48 0 chrX 26615670 26615733 -135984197 - L1MD2 LINE L1 -235 6124 6059 * 1218 205 4 0 chrX 26615730 26615979 -135983951 + L1ME1 LINE L1 5680 5929 -237 196 390 45 19 chrX 26615979 26616133 -135983797 + L2 LINE L2 2595 2752 -562 309 250 150 0 chrX 26616768 26616868 -135983062 + MER92B LTR ERV1 1 115 -521 339 194 0 0 chrX 26617018 26617085 -135982845 + MER92C LTR ERV1 487 553 -1 746 182 10 134 chrX 26617487 26617778 -135982152 + MER31-int LTR ERV1 1039 1293 -3643 1286 233 33 100 chrX 26618127 26618616 -135981314 + MER31-int LTR ERV1 3778 4233 -703 502 209 16 39 chrX 26618633 26618762 -135981168 + LTR37A LTR ERV1 1 126 -300 257 150 0 0 chrX 26618820 26618860 -135981070 + MER31-int LTR ERV1 4330 4369 -567 390 237 10 0 chrX 26618899 26618996 -135980934 + MER31-int LTR ERV1 4372 4469 -467 260 260 0 39 chrX 26619063 26619140 -135980790 + MER31-int LTR ERV1 4482 4555 -381 310 231 0 0 chrX 26619597 26619662 -135980268 + MER92B LTR ERV1 1 65 -571 360 167 30 0 chrX 26619882 26619948 -135979982 + MER92C LTR ERV1 487 554 0 319 272 16 24 chrX 26620833 26620958 -135978972 + CT-rich Low_complexity Low_complexity 5 128 0 425 266 35 0 chrX 26621528 26621641 -135978289 + MIR3 SINE MIR 40 156 -52 2397 46 0 3 chrX 26621681 26622024 -135977906 + AluY SINE Alu 1 342 0 361 303 70 38 chrX 26622057 26622242 -135977688 - MIR SINE MIR -7 255 65 67 60 0 0 chrX 26622776 26622892 -135977038 + AT_rich Low_complexity Low_complexity 1 116 0 420 270 137 58 chrX 26623496 26623840 -135976090 - L1MC4a LINE L1 -1901 5907 5537 1915 223 71 9 chrX 26624012 26624461 -135975469 - MLT1D LTR MaLR 0 505 29 1033 246 109 67 chrX 26626072 26626197 -135973733 + MLT1H1 LTR MaLR 1 119 -436 2561 60 0 0 chrX 26626197 26626499 -135973431 + AluY SINE Alu 1 302 -9 1033 246 109 67 chrX 26626499 26626897 -135973033 + MLT1H1 LTR MaLR 119 546 -9 746 287 26 17 chrX 26627259 26627489 -135972441 - MIR SINE MIR 0 262 31 339 260 65 49 chrX 26628410 26628533 -135971397 + L2 LINE L2 3184 3308 -5 4178 165 25 8 chrX 26628654 26629440 -135970490 - L1MB7 LINE L1 -9 6569 5770 444 181 0 12 chrX 26629451 26629534 -135970396 - L1MB7 LINE L1 -997 5543 5462 5114 217 37 53 chrX 26629606 26630606 -135969324 - L1MB7 LINE L1 -3142 3398 2384 2134 123 16 40 chrX 26630606 26630979 -135968951 - THE1B LTR MaLR 0 364 1 5114 217 37 53 chrX 26630979 26632425 -135967505 - L1MB7 LINE L1 -4156 2384 991 286 285 63 105 chrX 26632469 26632768 -135967162 - L1MDa LINE L1 -5534 1006 789 320 342 66 57 chrX 26632985 26633213 -135966717 - L1MDa LINE L1 -5898 642 413 825 264 61 32 chrX 26633395 26633706 -135966224 - L1MDa LINE L1 -6133 407 88 552 229 25 8 chrX 26634429 26634551 -135965379 - FLAM_C SINE Alu -9 124 1 1011 186 11 0 chrX 26634556 26634739 -135965191 + Tigger1 DNA MER2_type 2231 2415 -3 242 279 112 6 chrX 26634742 26634903 -135965027 - L1M4 LINE L1 -2380 3766 3589 243 0 0 0 chrX 26634906 26634933 -135964997 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 9894 31 0 0 chrX 26634939 26636884 -135963046 - L1PA3 LINE L1 -3 6152 4206 7727 33 2 0 chrX 26636880 26637844 -135962086 + L1P LINE L1 2511 3476 -2670 21727 40 9 3 chrX 26637991 26640920 -135959010 - L1P2 LINE L1 -472 5682 2731 424 366 45 24 chrX 26641702 26641948 -135957982 + MIR SINE MIR 3 253 -9 1808 111 49 85 chrX 26642803 26643192 -135956738 + THE1C LTR MaLR 1 375 0 207 69 0 0 chrX 26644141 26644170 -135955760 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 329 242 50 43 chrX 26644893 26645054 -135954876 - MER103 DNA DNA -2 164 3 331 143 18 0 chrX 26645440 26645496 -135954434 - THE1C LTR MaLR 0 375 319 415 160 287 7 chrX 26646234 26646368 -135953562 - MER5A DNA MER1_type -10 179 4 472 340 115 32 chrX 26647121 26647521 -135952409 - L2 LINE L2 0 3313 2881 231 218 0 0 chrX 26647576 26647631 -135952299 - L1MB2 LINE L1 -1 6170 6116 394 331 71 39 chrX 26647659 26647967 -135951963 + L1M2 LINE L1 4 321 -6528 * 2406 160 60 8 chrX 26647963 26648672 -135951258 + L1PA14 LINE L1 4806 5542 -624 6841 181 20 16 chrX 26648696 26650569 -135949361 + L1PA12 LINE L1 1926 3818 -3766 4020 109 6 19 chrX 26650570 26650933 -135948997 + L1PA14 LINE L1 5542 5895 -266 1858 167 0 3 chrX 26650933 26651232 -135948698 + AluJb SINE Alu 1 298 -14 4020 109 6 19 chrX 26651232 26651494 -135948436 + L1PA14 LINE L1 5895 6159 -2 3263 125 101 12 chrX 26651494 26652067 -135947863 + L1PB4 LINE L1 5530 6154 -2 407 200 0 0 chrX 26652092 26652162 -135947768 - FAM SINE Alu -27 158 89 2600 161 33 4 chrX 26652165 26652624 -135947306 - L1MB2 LINE L1 -77 6094 5623 * 17276 69 7 5 chrX 26652622 26654911 -135945019 + L1P LINE L1 1 2292 -3854 674 162 136 30 chrX 26655040 26655238 -135944692 + THE1B LTR MaLR 146 364 0 439 312 77 27 chrX 26655422 26655643 -135944287 + MIR SINE MIR 1 232 -30 1368 148 22 134 chrX 26655648 26656059 -135943871 + MLT1A1 LTR MaLR 1 365 0 809 253 0 6 chrX 26656516 26656694 -135943236 + MER5B DNA MER1_type 2 178 0 384 239 33 0 chrX 26656712 26656804 -135943126 + MER5A DNA MER1_type 12 106 -83 1713 261 57 6 chrX 26657088 26657602 -135942328 + MLT1F LTR MaLR 1 588 -2 398 389 36 16 chrX 26657829 26658076 -135941854 + L3 LINE CR1 217 468 -1109 255 365 24 16 chrX 26658342 26658468 -135941462 + L3 LINE CR1 500 626 -951 256 225 56 0 chrX 26660450 26660521 -135939409 - MER20 DNA MER1_type -143 76 2 496 241 146 50 chrX 26661001 26661262 -135938668 - L2 LINE L2 -1153 2161 1876 207 0 0 0 chrX 26661270 26661293 -135938637 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2018 110 22 0 chrX 26661293 26661565 -135938365 - AluSx SINE Alu -34 278 1 277 344 82 6 chrX 26661870 26662053 -135937877 + L3b LINE CR1 1145 1341 -242 200 106 21 43 chrX 26662235 26662282 -135937648 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 2117 109 7 3 chrX 26662302 26662605 -135937325 + AluSx SINE Alu 1 304 -8 276 120 0 0 chrX 26663228 26663278 -135936652 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 386 207 4 100 chrX 26664934 26665079 -135934851 + MLT1H LTR MaLR 28 191 -246 287 87 0 0 chrX 26666486 26666532 -135933398 + L1MA3 LINE L1 6260 6305 0 887 221 9 9 chrX 26666957 26667170 -135932760 + L1M3 LINE L1 5255 5467 -716 3013 165 34 0 chrX 26667294 26667832 -135932098 + L1MA9 LINE L1 5419 5974 -338 736 184 0 0 chrX 26667828 26667969 -135931961 - L1 LINE L1 -1154 4992 4852 * 1909 161 18 0 chrX 26667975 26668305 -135931625 + L1PB4 LINE L1 5807 6142 -14 1789 149 26 23 chrX 26668322 26668475 -135931455 + L1MA9 LINE L1 5961 6112 -200 1414 183 93 19 chrX 26668475 26668798 -135931132 - MER7A DNA MER2_type -1 345 1 1789 149 26 23 chrX 26668798 26668994 -135930936 + L1MA9 LINE L1 6112 6311 -1 226 268 10 10 chrX 26669089 26669186 -135930744 + CT-rich Low_complexity Low_complexity 4 100 0 281 317 28 14 chrX 26669703 26669848 -135930082 + HAL1 LINE L1 1112 1258 -1249 360 176 40 0 chrX 26669969 26670043 -135929887 + MLT1D LTR MaLR 429 505 0 351 311 96 47 chrX 26670806 26671169 -135928761 + L1MC/D LINE L1 4909 5289 -857 1170 264 57 10 chrX 26671177 26671560 -135928370 + L1MC/D LINE L1 5319 5719 -2089 1756 178 11 0 chrX 26671577 26671858 -135928072 + AluJo SINE Alu 5 288 -24 2073 138 0 19 chrX 26672018 26672329 -135927601 + AluSx SINE Alu 1 305 -7 1037 127 16 19 chrX 26672341 26672554 -135927376 + L1 LINE L1 5101 5310 -854 437 219 80 36 chrX 26672558 26672695 -135927235 + L1MC/D LINE L1 5560 5702 -2106 5508 86 56 4 chrX 26672732 26673560 -135926370 + L1MA2 LINE L1 5433 6303 -1 2372 97 0 7 chrX 26673578 26673886 -135926044 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 26674092 26674114 -135925816 + AT_rich Low_complexity Low_complexity 1 22 0 1491 189 108 44 chrX 26674389 26674732 -135925198 - MLT1A1 LTR MaLR 0 365 1 226 224 0 20 chrX 26676612 26676661 -135923269 + MER5A DNA MER1_type 4 51 -138 1663 181 46 38 chrX 26676661 26676845 -135923085 + MLT1B LTR MaLR 1 182 -208 387 0 0 0 chrX 26676845 26676888 -135923042 + (TC)n Simple_repeat Simple_repeat 2 44 0 1663 181 46 38 chrX 26676888 26677074 -135922856 + MLT1B LTR MaLR 182 374 -16 548 239 51 0 chrX 26677080 26677218 -135922712 + MER5A DNA MER1_type 45 189 0 201 232 89 18 chrX 26678407 26678463 -135921467 + L2 LINE L2 3206 3265 -7 42 57 0 0 chrX 26679671 26679741 -135920189 + GC_rich Low_complexity Low_complexity 1 70 0 28 0 0 0 chrX 26679794 26679822 -135920108 + GC_rich Low_complexity Low_complexity 1 28 0 1559 171 25 4 chrX 26680325 26680605 -135919325 - MLT1C LTR MaLR -50 417 132 362 305 150 0 chrX 26680910 26681077 -135918853 - L1ME LINE L1 -3459 2621 2430 311 312 50 7 chrX 26681534 26681675 -135918255 - L1ME LINE L1 -5887 183 37 1497 164 47 3 chrX 26682378 26682677 -135917253 - L1MA7 LINE L1 -7 6284 5973 420 20 0 0 chrX 26683143 26683192 -135916738 + (TG)n Simple_repeat Simple_repeat 2 50 0 630 178 14 62 chrX 26683693 26683839 -135916091 + L1MB8 LINE L1 3996 4134 -2012 * 3602 209 65 17 chrX 26683837 26684961 -135914969 + L1MB8 LINE L1 4421 5599 -567 1016 199 76 0 chrX 26684965 26685256 -135914674 + L1 LINE L1 3029 3341 -2805 614 98 20 0 chrX 26685258 26685360 -135914570 + L1PB2 LINE L1 6046 6149 -2 685 263 0 5 chrX 26685368 26685558 -135914372 + L1MB8 LINE L1 5590 5778 -388 261 268 17 50 chrX 26685646 26685825 -135914105 + (GGGTG)n Simple_repeat Simple_repeat 5 177 0 * 311 296 0 0 chrX 26685735 26685833 -135914097 + G-rich Low_complexity Low_complexity 1 98 0 22 80 0 0 chrX 26686206 26686256 -135913674 + AT_rich Low_complexity Low_complexity 1 50 0 270 318 135 41 chrX 26686774 26686944 -135912986 - MIR SINE MIR -70 192 7 427 136 48 87 chrX 26686945 26687048 -135912882 + MER92B LTR ERV1 1 99 -537 2271 79 41 0 chrX 26687061 26687352 -135912578 - AluSg SINE Alu -7 303 1 1547 132 47 27 chrX 26687352 26687609 -135912321 - MER1B DNA MER1_type -6 333 72 1227 220 39 15 chrX 26687740 26688077 -135911853 + L1MB8 LINE L1 5828 6172 -6 570 192 24 24 chrX 26689168 26689293 -135910637 - LTR37A LTR ERV1 -295 131 7 3303 127 14 15 chrX 26689700 26690218 -135909712 + Tigger1 DNA MER2_type 1 517 -1901 432 91 0 0 chrX 26690376 26690442 -135909488 + (TG)n Simple_repeat Simple_repeat 2 67 0 339 319 85 0 chrX 26690774 26690915 -135909015 + MIR SINE MIR 104 256 -6 1431 185 32 12 chrX 26692371 26692448 -135907482 - MER89 LTR ERV1 -65 494 420 2445 112 43 14 chrX 26692448 26692868 -135907062 + MSTB1 LTR MaLR 1 432 0 1431 185 32 12 chrX 26692868 26693174 -135906756 - MER89 LTR ERV1 -139 420 4 24 0 0 0 chrX 26693435 26693459 -135906471 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chrX 26693539 26693578 -135906352 + AT_rich Low_complexity Low_complexity 1 39 0 320 301 124 18 chrX 26693711 26693824 -135906106 - MIR SINE MIR -63 145 21 3393 238 38 56 chrX 26694197 26695447 -135904483 + L1MC4 LINE L1 6815 8042 0 193 25 0 100 chrX 26696077 26696117 -135903813 + (TATG)n Simple_repeat Simple_repeat 3 38 0 348 24 0 0 chrX 26696299 26696340 -135903590 + (CA)n Simple_repeat Simple_repeat 1 41 0 888 174 12 12 chrX 26696463 26696624 -135903306 - MER58B DNA MER1_type 0 341 181 2363 89 0 3 chrX 26697546 26697848 -135902082 + AluSq SINE Alu 1 301 -12 1558 67 0 10 chrX 26698180 26698375 -135901555 + AluY SINE Alu 1 193 -118 446 200 0 0 chrX 26698886 26698996 -135900934 + AluJb SINE Alu 212 321 0 1629 130 83 7 chrX 26699006 26699282 -135900648 - Tigger1 DNA MER2_type -203 2215 1919 1535 136 0 8 chrX 26699282 26699518 -135900412 + AluSg/x SINE Alu 78 311 -1 2776 106 16 31 chrX 26699518 26699738 -135900192 - Tigger1 DNA MER2_type -1391 1027 805 2311 91 13 0 chrX 26699738 26700047 -135899883 - AluSp SINE Alu 0 313 1 2776 106 16 31 chrX 26700047 26700279 -135899651 - Tigger1 DNA MER2_type -1613 805 582 255 61 0 0 chrX 26701969 26702002 -135897928 + (CATCT)n Simple_repeat Simple_repeat 3 35 0 1246 171 49 4 chrX 26702009 26702273 -135897657 + MER33 DNA MER1_type 1 276 -48 530 301 30 12 chrX 26702581 26702747 -135897183 - MIR SINE MIR -12 250 82 6139 38 8 0 chrX 26703354 26704540 -135895390 + L1PA5 LINE L1 4813 6004 -150 714 156 0 0 chrX 26704662 26704771 -135895159 - FLAM_C SINE Alu -32 111 3 187 205 0 26 chrX 26704775 26704814 -135895116 - MER5B DNA MER1_type -137 41 4 2369 71 0 3 chrX 26705058 26705353 -135894577 - AluSc SINE Alu -15 294 1 5611 44 0 0 chrX 26705401 26706078 -135893852 + L1PA6 LINE L1 5478 6154 0 352 175 0 0 chrX 26706281 26706357 -135893573 + L1MB7 LINE L1 6066 6141 -39 2288 98 0 0 chrX 26706366 26706671 -135893259 + AluY SINE Alu 1 305 -6 1579 198 43 10 chrX 26706675 26707069 -135892861 + L1 LINE L1 2683 3089 -3057 643 142 104 0 chrX 26707513 26707619 -135892311 - MER1B DNA MER1_type -180 117 1 1618 223 9 52 chrX 26707621 26708042 -135891888 + MER92B LTR ERV1 92 494 -142 932 112 0 0 chrX 26708042 26708054 -135891876 - L1MA8 LINE L1 -339 5952 5941 793 223 159 0 chrX 26708054 26708274 -135891656 - L1MA9 LINE L1 -226 5940 5686 666 205 8 16 chrX 26708277 26708526 -135891404 + L1MA9 LINE L1 5948 6290 -22 644 225 7 0 chrX 26708563 26708701 -135891229 + GA-rich Low_complexity Low_complexity 2 140 0 334 266 86 22 chrX 26708704 26708843 -135891087 + MER92B LTR ERV1 485 632 -4 739 297 205 28 chrX 26709204 26710197 -135889733 + L2 LINE L2 994 2162 -1152 21 0 0 0 chrX 26710329 26710350 -135889580 + AT_rich Low_complexity Low_complexity 1 21 0 378 278 103 35 chrX 26710573 26711058 -135888872 - L1M4 LINE L1 -2751 3395 2878 21 71 0 0 chrX 26711263 26711305 -135888625 + GC_rich Low_complexity Low_complexity 1 42 0 258 262 12 48 chrX 26711334 26711502 -135888428 + C-rich Low_complexity Low_complexity 4 165 0 244 289 12 24 chrX 26712111 26712194 -135887736 + MLT1G1-int LTR MaLR 1028 1109 -262 1182 248 121 76 chrX 26712483 26713052 -135886878 + MLT1G1 LTR MaLR 1 595 0 326 345 14 7 chrX 26713455 26713594 -135886336 + L3b LINE CR1 1294 1433 -150 294 350 35 26 chrX 26713849 26714041 -135885889 + MIR SINE MIR 38 235 -27 236 261 115 39 chrX 26714241 26714371 -135885559 + MIR SINE MIR 67 206 -56 849 302 72 104 chrX 26714420 26715505 -135884425 - L3 LINE CR1 -127 1450 401 1015 31 79 0 chrX 26715579 26715706 -135884224 - MER85 DNA T2_type -2 137 1 21 36 0 0 chrX 26716254 26716282 -135883648 + AT_rich Low_complexity Low_complexity 1 28 0 188 417 48 0 chrX 26716549 26716633 -135883297 - L2 LINE L2 -31 3241 3154 34 24 0 0 chrX 26717213 26717254 -135882676 + AT_rich Low_complexity Low_complexity 1 41 0 725 294 73 63 chrX 26717262 26717303 -135882627 - LTR33A LTR ERVL -35 488 449 2224 118 49 0 chrX 26717303 26717650 -135882280 + THE1B LTR MaLR 1 364 0 725 294 73 63 chrX 26717650 26718085 -135881845 - LTR33A LTR ERVL -74 449 7 22 0 0 0 chrX 26718310 26718332 -135881598 + AT_rich Low_complexity Low_complexity 1 22 0 7058 65 9 0 chrX 26718463 26719780 -135880150 - L1PA7 LINE L1 -2 6152 4820 251 222 0 14 chrX 26919788 26919860 -135680070 + (TA)n Simple_repeat Simple_repeat 1 71 0 254 283 0 22 chrX 26919860 26919952 -135679978 + L1MC4 LINE L1 6614 6703 -1339 271 281 0 0 chrX 26919985 26920074 -135679856 + L1MC4 LINE L1 6615 6703 -1339 2308 138 22 0 chrX 26920899 26921255 -135678675 + THE1B LTR MaLR 1 364 0 312 91 0 0 chrX 26921913 26921957 -135677973 + (CA)n Simple_repeat Simple_repeat 2 45 0 31 44 0 0 chrX 26922454 26922499 -135677431 + AT_rich Low_complexity Low_complexity 1 45 0 234 156 0 0 chrX 26922500 26922545 -135677385 + GA-rich Low_complexity Low_complexity 4 48 0 308 312 95 62 chrX 26922852 26923240 -135676690 + L1ME4a LINE L1 4501 4901 -1245 1543 137 98 31 chrX 26923286 26923640 -135676290 + MSTA LTR MaLR 3 428 0 32 26 0 0 chrX 26923690 26923729 -135676201 + AT_rich Low_complexity Low_complexity 1 39 0 2233 115 0 6 chrX 26923857 26924169 -135675761 + AluSx SINE Alu 3 312 0 262 180 75 76 chrX 26924348 26924518 -135675412 + L1P5 LINE L1 5319 5489 -693 * 551 281 102 20 chrX 26924513 26924808 -135675122 + L1ME4a LINE L1 5509 5827 -294 581 279 80 63 chrX 26924902 26925564 -135674366 - L1MEc LINE L1 -3334 2881 2209 1896 97 19 59 chrX 26925605 26925925 -135674005 - AluSq SINE Alu -6 307 1 308 236 11 56 chrX 26926155 26926244 -135673686 + L2 LINE L2 3195 3279 -34 595 272 91 55 chrX 26926335 26926698 -135673232 - L1MEc LINE L1 -4642 1754 1405 2063 86 7 4 chrX 26926698 26927010 -135672920 - AluSg SINE Alu 0 313 1 595 272 91 55 chrX 26927010 26927373 -135672557 - L1MEc LINE L1 -4991 1405 1001 183 205 0 0 chrX 26927566 26927605 -135672325 + CT-rich Low_complexity Low_complexity 3 41 0 2918 81 74 25 chrX 26927729 26928161 -135671769 - MLT2A2 LTR ERVL 0 453 1 702 197 40 0 chrX 26928172 26928324 -135671606 + L1MA10 LINE L1 6170 6327 -7 278 314 39 58 chrX 26928438 26928645 -135671285 + L1ME4a LINE L1 5610 5812 -309 393 282 28 7 chrX 26928747 26928889 -135671041 + L1ME4a LINE L1 5968 6112 -9 6928 184 14 12 chrX 26930238 26932428 -135667502 - L1PA16 LINE L1 -179 5987 3798 3135 227 8 8 chrX 26932427 26933211 -135666719 + L1PA16 LINE L1 3014 3797 -2349 * 551 309 149 29 chrX 26934138 26934513 -135665417 - MLT1L LTR MaLR -6 609 190 236 290 14 0 chrX 26934934 26935003 -135664927 + MLT1J LTR MaLR 109 178 -333 24 77 0 0 chrX 26936446 26936498 -135663432 + AT_rich Low_complexity Low_complexity 1 52 0 194 192 0 14 chrX 26936538 26936611 -135663319 + (TA)n Simple_repeat Simple_repeat 1 72 0 214 377 49 0 chrX 26937243 26937304 -135662626 - MIR SINE MIR -184 78 15 2289 76 0 3 chrX 26937665 26937956 -135661974 + AluY SINE Alu 20 309 -2 21 0 0 0 chrX 26939022 26939043 -135660887 + AT_rich Low_complexity Low_complexity 1 21 0 225 330 39 29 chrX 26939161 26939264 -135660666 + L2 LINE L2 3209 3312 -1 485 268 56 45 chrX 26940657 26940836 -135659094 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chrX 26940903 26940924 -135659006 + AT_rich Low_complexity Low_complexity 1 21 0 983 245 100 10 chrX 26942244 26942554 -135657376 - MER58B DNA MER1_type 0 341 4 304 389 26 10 chrX 26942590 26942783 -135657147 - MIR SINE MIR -64 198 3 499 239 55 0 chrX 26942908 26943017 -135656913 - MER5A DNA MER1_type -13 176 62 3794 183 67 12 chrX 26943030 26943788 -135656142 - L1MB7 LINE L1 -23 6161 5362 412 125 0 0 chrX 26943788 26943852 -135656078 - MER5A DNA MER1_type -125 64 1 585 315 98 20 chrX 26943961 26944266 -135655664 - L2 LINE L2 -4 3309 2981 876 257 33 5 chrX 26944282 26944492 -135655438 + MIR SINE MIR 19 234 -28 328 263 13 0 chrX 26944500 26944576 -135655354 + MER69 DNA AcHobo 2 78 -1148 1018 278 142 34 chrX 26944700 26945290 -135654640 - L2 LINE L2 -339 2975 2322 514 99 0 0 chrX 26945455 26945526 -135654404 - MER39 LTR ERV1 -378 329 259 * 540 129 14 121 chrX 26945501 26945641 -135654289 - MER21A LTR ERV1 -733 198 74 495 0 0 0 chrX 26945793 26945848 -135654082 + (CA)n Simple_repeat Simple_repeat 2 56 0 185 277 223 0 chrX 26945969 26946081 -135653849 + L2 LINE L2 3176 3312 -1 244 385 71 12 chrX 26946190 26946359 -135653571 + MIR SINE MIR 28 206 -56 2296 76 0 13 chrX 26947085 26947388 -135652542 - AluSq SINE Alu -14 299 1 253 214 186 0 chrX 26947688 26947758 -135652172 + L2 LINE L2 3195 3277 -36 193 313 68 62 chrX 26948000 26948176 -135651754 - L2 LINE L2 -265 3007 2831 195 69 0 0 chrX 26949327 26949356 -135650574 + (T)n Simple_repeat Simple_repeat 1 29 0 393 256 80 24 chrX 26950317 26950442 -135649488 + MER117 DNA MER1_type 19 150 -47 207 355 58 0 chrX 26950464 26950585 -135649345 - L3 LINE CR1 -282 1295 1168 198 0 0 0 chrX 26951128 26951150 -135648780 + (T)n Simple_repeat Simple_repeat 1 22 0 390 185 12 0 chrX 26951877 26951958 -135647972 - L1MA8 LINE L1 -10 6281 6200 4395 173 48 29 chrX 26951959 26952818 -135647112 - L1 LINE L1 -2311 3835 2951 2366 92 0 0 chrX 26952818 26953124 -135646806 - AluSc SINE Alu -3 306 1 4395 173 48 29 chrX 26953124 26953302 -135646628 - L1 LINE L1 -3195 2951 2778 632 280 76 18 chrX 26953365 26953590 -135646340 - MIR SINE MIR -24 238 1 2190 78 14 14 chrX 26953613 26953909 -135646021 + AluY SINE Alu 1 296 -15 312 172 0 0 chrX 26953909 26953967 -135645963 + (TA)n Simple_repeat Simple_repeat 1 58 0 350 315 74 0 chrX 26953994 26954143 -135645787 - MIR SINE MIR -3 259 100 25 0 0 0 chrX 26954452 26954477 -135645453 + AT_rich Low_complexity Low_complexity 1 25 0 893 294 41 32 chrX 26955350 26955694 -135644236 - MLT1H LTR MaLR 0 549 203 362 270 10 20 chrX 26955868 26955968 -135643962 + MIR SINE MIR 156 254 -8 1467 153 6 102 chrX 26956253 26956599 -135643331 + AluJo SINE Alu 1 316 0 210 337 56 11 chrX 26958182 26958271 -135641659 - L2 LINE L2 -12 3260 3168 1913 212 63 52 chrX 26958428 26958984 -135640946 - MER68 LTR ERV1 0 562 1 1469 225 25 3 chrX 26960112 26960428 -135639502 - MLT1D LTR MaLR -2 503 181 1195 163 41 41 chrX 26960441 26960686 -135639244 - MLT1D LTR MaLR -260 245 1 780 230 75 58 chrX 26960775 26961053 -135638877 - L2 LINE L2 0 3313 3031 419 189 33 0 chrX 26961056 26961140 -135638790 + MLT1C LTR MaLR 1 87 -380 1495 192 120 0 chrX 26961140 26961448 -135638482 - MER2 DNA MER2_type 0 345 1 1333 186 98 55 chrX 26961453 26961819 -135638111 + MLT1C LTR MaLR 86 467 0 481 312 84 25 chrX 26961819 26962077 -135637853 - L2 LINE L2 -281 3032 2765 2618 114 39 0 chrX 26962318 26962730 -135637200 - MSTA LTR MaLR 0 428 1 247 130 0 0 chrX 26963405 26963451 -135636479 - LTR66 LTR ERVL -171 439 394 227 435 2 0 chrX 26963963 26964097 -135635833 + MIR SINE MIR 10 145 -63 225 316 0 53 chrX 26965324 26965400 -135634530 + MIR SINE MIR 24 95 -113 2048 139 0 3 chrX 26965408 26965702 -135634228 - AluSx SINE Alu -15 297 5 796 308 70 30 chrX 26965991 26966538 -135633392 - L2 LINE L2 -33 3280 2714 21 0 0 0 chrX 26969828 26969849 -135630081 + AT_rich Low_complexity Low_complexity 1 21 0 1034 170 178 35 chrX 26969852 26970111 -135629819 + AluJb SINE Alu 1 296 -6 21 0 0 0 chrX 26971077 26971098 -135628832 + AT_rich Low_complexity Low_complexity 1 21 0 514 328 39 35 chrX 26971195 26971427 -135628503 + MIR SINE MIR 29 261 -1 479 200 32 11 chrX 26971436 26971531 -135628399 + AluS SINE Alu 1 97 -216 216 0 0 0 chrX 26971535 26971559 -135628371 + (CA)n Simple_repeat Simple_repeat 1 24 0 987 221 67 30 chrX 26972988 26973286 -135626644 - MER46C DNA MER2_type -29 309 1 2246 217 60 10 chrX 26974243 26974759 -135625171 - MER34 LTR ERV1 0 542 1 371 214 0 79 chrX 26975383 26975472 -135624458 + MER96 DNA MER1_type? 94 175 0 274 317 140 21 chrX 26975536 26975864 -135624066 + L2 LINE L2 1909 2275 -1039 3694 55 4 2 chrX 26977004 26977476 -135622454 - L1PA7 LINE L1 -4 6150 5678 641 287 0 13 chrX 26977907 26978064 -135621866 + MER5B DNA MER1_type 24 178 0 910 99 0 14 chrX 26978205 26978346 -135621584 + L1PB1 LINE L1 6012 6150 -1 1220 121 204 57 chrX 26978556 26978821 -135621109 + AluJo SINE Alu 1 304 -8 21 36 0 0 chrX 26979280 26979308 -135620622 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 26979609 26979629 -135620301 + (A)n Simple_repeat Simple_repeat 1 20 0 636 202 90 85 chrX 26980349 26980424 -135619506 - MER5A DNA MER1_type 0 189 116 2387 97 0 0 chrX 26980424 26980724 -135619206 - AluSg SINE Alu -10 300 1 636 202 90 85 chrX 26980724 26980836 -135619094 - MER5A DNA MER1_type -73 116 1 447 271 8 0 chrX 26980870 26980988 -135618942 + MER103 DNA DNA 2 120 -46 2190 105 6 40 chrX 26982266 26982589 -135617341 - AluSx SINE Alu 0 312 1 535 324 82 11 chrX 26982863 26983144 -135616786 - L2 LINE L2 0 3313 3013 274 339 0 0 chrX 26983543 26983652 -135616278 - MIR SINE MIR -4 258 150 24 53 0 0 chrX 26983763 26983801 -135616129 + AT_rich Low_complexity Low_complexity 1 38 0 1357 204 87 32 chrX 26983929 26984273 -135615657 + MLT1A1 LTR MaLR 3 365 0 243 318 0 0 chrX 26985152 26985215 -135614715 + L2 LINE L2 3206 3268 -4 2016 211 44 32 chrX 26987509 26988007 -135611923 - MLT1D LTR MaLR -1 504 1 2259 97 3 0 chrX 26988362 26988660 -135611270 - AluSg SINE Alu -11 299 1 800 182 61 7 chrX 26989073 26989221 -135610709 + MLT1A1 LTR MaLR 11 166 -199 1529 227 40 20 chrX 26990006 26990354 -135609576 + MLT1A1 LTR MaLR 11 365 0 284 327 94 6 chrX 26992068 26992227 -135607703 + MER5A DNA MER1_type 17 189 0 234 256 212 15 chrX 26992556 26992693 -135607237 + MIR SINE MIR 79 242 -20 353 333 8 30 chrX 26994539 26994671 -135605259 + L2 LINE L2 3185 3313 0 1986 219 14 32 chrX 26995483 26995981 -135603949 + L1ME1 LINE L1 5584 6072 -94 351 0 0 0 chrX 26995992 26995998 -135603932 + (TG)n Simple_repeat Simple_repeat 1 45 0 351 0 0 0 chrX 26995998 26996037 -135603893 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 51 0 0 chrX 26996136 26996175 -135603755 + AT_rich Low_complexity Low_complexity 1 39 0 1262 62 0 23 chrX 26998190 26998367 -135601563 - L1MA1 LINE L1 0 6302 6130 503 314 41 17 chrX 26998944 26999116 -135600814 + MIR SINE MIR 9 184 -78 1111 223 0 22 chrX 26999130 26999354 -135600576 - MER58A DNA MER1_type -5 219 1 1978 280 172 16 chrX 27000934 27002143 -135597787 + L2 LINE L2 1897 3296 -17 1884 139 0 27 chrX 27002172 27002466 -135597464 + AluJo SINE Alu 4 289 -23 2257 114 0 0 chrX 27004867 27005164 -135594766 - AluSx SINE Alu -15 297 1 286 319 15 15 chrX 27006246 27006381 -135593549 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 250 165 33 22 chrX 27006550 27006641 -135593289 + (TA)n Simple_repeat Simple_repeat 1 92 0 200 238 79 16 chrX 27007579 27007642 -135592288 - MER5A DNA MER1_type 0 189 123 493 295 21 47 chrX 27009745 27009938 -135589992 - MIR SINE MIR -8 254 67 2329 78 17 0 chrX 27011470 27011764 -135588166 - AluSx SINE Alu -13 299 1 2075 88 27 31 chrX 27011909 27012203 -135587727 + AluSx SINE Alu 1 293 -19 185 268 0 54 chrX 27012285 27012341 -135587589 - L2 LINE L2 0 3313 3261 * 314 317 188 0 chrX 27012340 27012526 -135587404 - L2 LINE L2 -901 2413 2193 236 157 20 20 chrX 27013031 27013082 -135586848 - MLT2F LTR ERVL 0 663 613 465 228 61 0 chrX 27013154 27013268 -135586662 - MLT2F LTR ERVL -64 599 479 921 296 61 13 chrX 27013357 27013668 -135586262 - MLT2F LTR ERVL -337 326 1 28 0 0 0 chrX 27014624 27014652 -135585278 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 27015451 27015473 -135584457 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrX 27015761 27015781 -135584149 + (TG)n Simple_repeat Simple_repeat 2 21 0 2401 81 0 0 chrX 27016186 27016484 -135583446 - AluSx SINE Alu -14 298 1 1131 295 50 29 chrX 27017516 27018001 -135581929 - MLT1J LTR MaLR -16 495 1 195 114 0 0 chrX 27019276 27019311 -135580619 + (TAA)n Simple_repeat Simple_repeat 3 37 0 225 0 0 0 chrX 27019800 27019825 -135580105 + (TG)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chrX 27019824 27019846 -135580084 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 7112 49 19 10 chrX 27020996 27022287 -135577643 - L1PA8 LINE L1 -2 6170 4876 1053 205 82 72 chrX 27022403 27022731 -135577199 - LTR37A LTR ERV1 -8 418 84 2203 58 4 0 chrX 27022731 27023005 -135576925 + AluY SINE Alu 37 311 0 1053 205 82 72 chrX 27023005 27023090 -135576840 - LTR37A LTR ERV1 -342 84 1 223 253 63 42 chrX 27023367 27023462 -135576468 - MER5A DNA MER1_type -13 176 80 * 246 256 0 81 chrX 27023381 27023467 -135576463 + MER5A DNA MER1_type 43 121 -68 576 135 62 0 chrX 27024868 27024964 -135574966 + FLAM_A SINE Alu 18 119 -23 189 0 0 0 chrX 27024964 27024985 -135574945 + (TA)n Simple_repeat Simple_repeat 2 22 0 1586 141 0 155 chrX 27025681 27026042 -135573888 + AluJo SINE Alu 1 305 -7 1111 216 0 22 chrX 27026056 27026329 -135573601 + L1MB7 LINE L1 4323 4589 -1557 4242 99 65 3 chrX 27026329 27026984 -135572946 + L1PA15 LINE L1 5467 6164 -1 21 0 0 0 chrX 27027354 27027375 -135572555 + AT_rich Low_complexity Low_complexity 1 21 0 3360 150 120 26 chrX 27027396 27028077 -135571853 + L1MB7 LINE L1 5431 6175 -9 2712 195 80 8 chrX 27028151 27028762 -135571168 + MER63C DNA MER1_type 254 908 -22 184 320 22 82 chrX 27028942 27029173 -135570757 - L2 LINE L2 0 3313 3097 315 203 0 0 chrX 27029980 27030049 -135569881 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 23 33 0 0 chrX 27031131 27031161 -135568769 + AT_rich Low_complexity Low_complexity 1 30 0 228 35 0 0 chrX 27031277 27031306 -135568624 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 2055 106 3 14 chrX 27031602 27031885 -135568045 + AluSg SINE Alu 1 280 -30 21 71 0 0 chrX 27032295 27032337 -135567593 + AT_rich Low_complexity Low_complexity 1 42 0 5232 14 0 0 chrX 27032337 27032930 -135567000 - L1PA2 LINE L1 0 6155 5563 554 0 0 0 chrX 27032930 27032993 -135566937 + L1PA2 LINE L1 5487 5549 -606 742 233 0 6 chrX 27033683 27033846 -135566084 + L1MD3 LINE L1 7502 7663 -332 2058 151 0 0 chrX 27034429 27034733 -135565197 + AluSx SINE Alu 1 304 -8 243 0 0 0 chrX 27034733 27034760 -135565170 + (TA)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chrX 27034819 27034846 -135565084 + AT_rich Low_complexity Low_complexity 1 27 0 2205 56 8 0 chrX 27034849 27035115 -135564815 + AluSq SINE Alu 37 304 -9 591 301 68 16 chrX 27036833 27037082 -135562848 + MIR SINE MIR 1 262 0 2316 116 0 0 chrX 27037101 27037412 -135562518 + AluSx SINE Alu 1 311 -1 607 289 253 14 chrX 27038200 27038560 -135561370 - L3 LINE CR1 -15 1562 1117 1151 242 8 4 chrX 27040543 27040791 -135559139 + MIR SINE MIR 12 260 -2 231 270 95 14 chrX 27041004 27041078 -135558852 - L2 LINE L2 0 3272 3193 297 0 0 0 chrX 27042001 27042034 -135557896 + (T)n Simple_repeat Simple_repeat 1 33 0 1704 164 32 39 chrX 27042117 27042428 -135557502 - AluJo SINE Alu -3 309 1 854 86 0 0 chrX 27042601 27042706 -135557224 - AluSg/x SINE Alu -16 293 189 1175 167 28 9 chrX 27043217 27043432 -135556498 - MER20 DNA MER1_type 0 219 1 347 268 239 14 chrX 27043669 27043811 -135556119 - MER5A DNA MER1_type 0 189 16 309 183 0 0 chrX 27044477 27044537 -135555393 + GA-rich Low_complexity Low_complexity 2 61 0 314 167 0 33 chrX 27045144 27045204 -135554726 - L2 LINE L2 -2 3270 3213 217 297 67 19 chrX 27045859 27045964 -135553966 + MIR SINE MIR 34 144 -64 187 271 119 0 chrX 27047758 27047817 -135552113 + MIR SINE MIR 197 262 0 294 302 36 50 chrX 27047825 27047964 -135551966 + L2 LINE L2 3116 3252 -20 1930 55 35 0 chrX 27048123 27048380 -135551550 + L1PA7 LINE L1 5888 6153 -1 214 333 69 0 chrX 27048609 27048696 -135551234 - L2 LINE L2 -2 3311 3219 691 288 57 40 chrX 27048724 27049023 -135550907 - L2 LINE L2 -86 3227 2924 2555 215 119 69 chrX 27049567 27050563 -135549367 - L1MC4 LINE L1 0 8042 6997 26 0 0 0 chrX 27050980 27051006 -135548924 + AT_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chrX 27051561 27051602 -135548328 + (CA)n Simple_repeat Simple_repeat 2 42 0 2085 244 40 19 chrX 27053633 27054255 -135545675 - L1ME2 LINE L1 -6 6158 5524 2459 77 0 0 chrX 27054904 27055203 -135544727 - AluSx SINE Alu -11 301 3 2339 94 0 3 chrX 27057662 27057961 -135541969 - AluSq SINE Alu -13 300 3 534 288 58 29 chrX 27058351 27058556 -135541374 - MIR SINE MIR -33 229 19 211 271 0 0 chrX 27061673 27061721 -135538209 + (TG)n Simple_repeat Simple_repeat 1 48 0 186 294 212 12 chrX 27062927 27063012 -135536918 - MIR3 SINE MIR -105 103 2 208 309 0 0 chrX 27063080 27063135 -135536795 - L2 LINE L2 -12 3301 3247 195 42 0 0 chrX 27064005 27064029 -135535901 + (A)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chrX 27064390 27064419 -135535511 + AT_rich Low_complexity Low_complexity 1 29 0 392 271 66 8 chrX 27064628 27064750 -135535180 + L3b LINE CR1 1230 1358 -225 642 247 133 0 chrX 27065643 27065809 -135534121 + MER5A DNA MER1_type 1 188 -1 2568 52 0 7 chrX 27065841 27066148 -135533782 - AluY SINE Alu -6 305 1 21 0 0 0 chrX 27067704 27067725 -135532205 + AT_rich Low_complexity Low_complexity 1 21 0 2436 94 0 0 chrX 27069125 27069434 -135530496 + AluSx SINE Alu 2 310 -2 198 0 0 0 chrX 27071499 27071521 -135528409 + (A)n Simple_repeat Simple_repeat 1 22 0 273 75 0 0 chrX 27071824 27071864 -135528066 + (TA)n Simple_repeat Simple_repeat 1 40 0 324 125 0 0 chrX 27071864 27071928 -135528002 + (A)n Simple_repeat Simple_repeat 1 64 0 21 0 0 0 chrX 27072436 27072457 -135527473 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chrX 27072873 27072900 -135527030 + (CA)n Simple_repeat Simple_repeat 1 27 0 309 51 0 0 chrX 27076070 27076109 -135523821 + (TG)n Simple_repeat Simple_repeat 2 40 0 401 118 118 0 chrX 27078392 27078460 -135521470 + AluS SINE Alu 1 76 -227 2393 93 0 10 chrX 27078527 27078838 -135521092 + AluSg SINE Alu 1 308 -2 386 287 70 32 chrX 27080088 27080245 -135519685 + MER5B DNA MER1_type 15 177 -1 350 255 155 37 chrX 27080257 27080418 -135519512 - MER5A DNA MER1_type -7 182 3 21 57 0 0 chrX 27080850 27080885 -135519045 + AT_rich Low_complexity Low_complexity 1 35 0 260 118 0 20 chrX 27083192 27083243 -135516687 + (TA)n Simple_repeat Simple_repeat 2 51 0 2388 71 0 0 chrX 27083365 27083660 -135516270 + AluY SINE Alu 5 299 -12 232 286 0 44 chrX 27085529 27085620 -135514310 + MIR SINE MIR 69 155 -107 418 332 48 78 chrX 27085677 27086090 -135513840 - L2 LINE L2 -29 3284 2884 2333 90 0 10 chrX 27086092 27086393 -135513537 + AluSg SINE Alu 1 298 -12 243 0 0 0 chrX 27086467 27086494 -135513436 + (TG)n Simple_repeat Simple_repeat 2 28 0 2380 75 0 7 chrX 27086630 27086935 -135512995 - AluY SINE Alu -8 303 1 525 258 138 79 chrX 27087300 27087808 -135512122 - MLT1H LTR MaLR -4 545 1 5450 95 20 1 chrX 27089337 27090139 -135509791 - L1MA3 LINE L1 0 7724 6908 2705 62 122 5 chrX 27090139 27090540 -135509390 + LTR7 LTR ERV1 1 448 -2 3040 103 9 21 chrX 27090542 27091007 -135508923 + HERVH LTR ERV1 1 459 -7254 14598 135 67 39 chrX 27091061 27094174 -135505756 + HERVH LTR ERV1 793 3993 -3720 4449 133 1 1 chrX 27094176 27094835 -135505095 + HERVH LTR ERV1 4488 5146 -2567 1332 151 18 0 chrX 27094835 27095054 -135504876 + HERVH LTR ERV1 5597 5819 -1894 * 2490 82 48 13 chrX 27095052 27095431 -135504499 + HERVH LTR ERV1 7322 7713 0 2614 86 98 5 chrX 27095433 27095841 -135504089 + LTR7 LTR ERV1 3 448 -2 1744 155 10 0 chrX 27095843 27096329 -135503601 - L1MA3 LINE L1 -743 6822 6421 * 40659 36 1 1 chrX 27096324 27102478 -135497452 - L1PA3 LINE L1 0 6155 1 12641 169 52 18 chrX 27102479 27103606 -135496324 - L1MA3 LINE L1 -1133 6432 5345 1964 125 0 7 chrX 27103606 27103887 -135496043 - AluSx SINE Alu -4 308 30 12641 169 52 18 chrX 27103887 27103904 -135496026 - L1MA3 LINE L1 -2220 5345 5330 2210 99 3 0 chrX 27103904 27104211 -135495719 - AluSq SINE Alu 0 308 1 12641 169 52 18 chrX 27104211 27107399 -135492531 - L1MA3 LINE L1 -2235 5330 16 314 263 149 0 chrX 27107478 27107592 -135492338 + MIR SINE MIR 59 189 -73 557 298 105 41 chrX 27109406 27109701 -135490229 - MLT1J2 LTR MaLR -16 434 121 1423 277 30 13 chrX 27109736 27110129 -135489801 - LTR16A LTR ERVL -35 415 16 2261 93 10 6 chrX 27110372 27110683 -135489247 - AluSx SINE Alu 0 312 1 25 31 0 0 chrX 27110778 27110810 -135489120 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chrX 27110891 27110940 -135488990 + AT_rich Low_complexity Low_complexity 1 49 0 1494 281 115 35 chrX 27111793 27112165 -135487765 - MLT1E LTR MaLR 0 593 161 303 49 0 0 chrX 27112165 27112206 -135487724 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1494 281 115 35 chrX 27112206 27112382 -135487548 - MLT1E LTR MaLR -432 161 1 1612 99 9 0 chrX 27112571 27112792 -135487138 + L1MA1 LINE L1 6080 6302 0 271 202 90 0 chrX 27113850 27113939 -135485991 - LTR37A LTR ERV1 -2 424 328 1563 222 25 18 chrX 27113953 27114350 -135485580 - LTR37B LTR ERV1 -63 405 6 1674 202 27 21 chrX 27114413 27114750 -135485180 - MER58B DNA MER1_type -1 340 2 28 79 0 0 chrX 27116067 27116130 -135483800 + AT_rich Low_complexity Low_complexity 1 63 0 269 325 118 61 chrX 27116961 27117173 -135482757 - MLT1H LTR MaLR -207 342 119 190 191 149 0 chrX 27117394 27117441 -135482489 - L2 LINE L2 -5 3308 3255 340 295 15 60 chrX 27117631 27117831 -135482099 + LTR16B LTR ERVL 274 464 0 503 308 27 11 chrX 27118375 27118560 -135481370 - MER117 DNA MER1_type -8 189 2 761 308 36 42 chrX 27119533 27119868 -135480062 + LTR16B LTR ERVL 131 463 -1 260 282 0 14 chrX 27121506 27121577 -135478353 - LTR33A LTR ERVL -6 517 448 243 270 45 54 chrX 27121769 27121880 -135478050 - MLT2E LTR ERVL -480 148 39 21 36 0 0 chrX 27122394 27122422 -135477508 + AT_rich Low_complexity Low_complexity 1 28 0 206 291 0 0 chrX 27123088 27123143 -135476787 + GA-rich Low_complexity Low_complexity 1 55 0 1385 133 59 30 chrX 27123738 27124009 -135475921 + THE1C LTR MaLR 94 372 -3 431 311 71 5 chrX 27124011 27124207 -135475723 - MIR SINE MIR -7 255 47 478 263 156 8 chrX 27124285 27124598 -135475332 + MLT1G1 LTR MaLR 1 304 -226 349 248 174 0 chrX 27124630 27124739 -135475191 + MLT1G1 LTR MaLR 279 406 -136 1653 274 171 4 chrX 27125044 27125552 -135474378 - MLT1E LTR MaLR 0 593 1 1128 286 48 23 chrX 27125621 27125917 -135474013 + L2 LINE L2 2911 3221 -92 2223 97 17 0 chrX 27125917 27126215 -135473715 + AluSc SINE Alu 1 303 -6 1128 286 48 23 chrX 27126215 27126310 -135473620 + L2 LINE L2 3221 3312 -1 4234 33 8 0 chrX 27126652 27127165 -135472765 + L1P LINE L1 3261 3777 -2369 240 150 46 31 chrX 27127265 27127330 -135472600 + L1MC4 LINE L1 2006 6983 -1339 255 250 0 62 chrX 27127331 27127427 -135472503 - L1MC4 LINE L1 -1339 6703 6614 * 265 311 0 0 chrX 27127403 27127493 -135472437 + L1MC4 LINE L1 6614 6703 -1339 226 286 0 24 chrX 27127465 27127549 -135472381 - L1MC4 LINE L1 -1339 6703 6622 * 1065 145 0 0 chrX 27127549 27127728 -135472202 + (TA)n Simple_repeat Simple_repeat 2 180 0 301 285 60 20 chrX 27127763 27127914 -135472016 - L1M4 LINE L1 -2952 3194 3038 642 149 0 75 chrX 27127957 27128118 -135471812 + MER5C DNA MER1_type 176 324 0 566 0 0 92 chrX 27129396 27129483 -135470447 + (T)n Simple_repeat Simple_repeat 1 79 0 243 0 0 0 chrX 27129633 27129660 -135470270 + (T)n Simple_repeat Simple_repeat 1 27 0 26 30 0 0 chrX 27129806 27129839 -135470091 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chrX 27129865 27129901 -135470029 + AT_rich Low_complexity Low_complexity 1 36 0 333 82 0 0 chrX 27130120 27130169 -135469761 + (CA)n Simple_repeat Simple_repeat 2 50 0 2539 58 0 43 chrX 27130329 27130656 -135469274 + AluSp SINE Alu 1 313 0 369 0 0 0 chrX 27130673 27130714 -135469216 + (A)n Simple_repeat Simple_repeat 1 41 0 368 252 92 8 chrX 27131913 27132032 -135467898 + L1ME4a LINE L1 5992 6120 -1 1785 63 41 0 chrX 27133067 27133288 -135466642 - AluY SINE Alu -81 230 1 23 0 0 0 chrX 27133289 27133312 -135466618 + AT_rich Low_complexity Low_complexity 1 23 0 1229 188 9 125 chrX 27133312 27133648 -135466282 - AluJb SINE Alu -3 299 3 2311 91 7 0 chrX 27133652 27133950 -135465980 - AluSx SINE Alu -12 300 1 1811 139 42 0 chrX 27133950 27134237 -135465693 - AluJb SINE Alu -13 299 1 237 271 0 0 chrX 27134238 27134308 -135465622 + L1MB7 LINE L1 6115 6184 0 1690 133 70 11 chrX 27134366 27134637 -135465293 - AluJb SINE Alu -24 288 2 26 0 0 0 chrX 27135020 27135046 -135464884 + AT_rich Low_complexity Low_complexity 1 26 0 1977 150 0 0 chrX 27135046 27135332 -135464598 - AluSx SINE Alu -26 286 1 1625 156 20 20 chrX 27135335 27135630 -135464300 - AluJb SINE Alu -17 295 1 21 36 0 0 chrX 27137513 27137541 -135462389 + AT_rich Low_complexity Low_complexity 1 28 0 798 66 16 74 chrX 27138836 27138957 -135460973 - AluY SINE Alu -196 115 2 951 134 11 34 chrX 27138958 27139137 -135460793 + L1MB4 LINE L1 6004 6178 -2 1183 177 163 24 chrX 27139151 27139445 -135460485 + L1MB5 LINE L1 5833 6167 -7 253 141 202 0 chrX 27140730 27140829 -135459101 + AluYa5 SINE Alu 15 133 -168 36 64 0 0 chrX 27141966 27142013 -135457917 + AT_rich Low_complexity Low_complexity 1 47 0 2101 30 0 0 chrX 27342109 27342345 -135257585 - AluY SINE Alu -75 236 1 371 186 25 17 chrX 27342381 27342499 -135257431 + CT-rich Low_complexity Low_complexity 2 120 0 394 260 41 32 chrX 27342595 27342718 -135257212 + MLT1H LTR MaLR 177 300 -249 210 195 52 52 chrX 27342749 27342826 -135257104 - L3 LINE CR1 -26 1551 1475 640 328 70 16 chrX 27342930 27343299 -135256631 - L2 LINE L2 -972 2342 1954 2799 242 54 13 chrX 27343734 27344568 -135255362 - MER97a DNA MER1_type? -12 882 15 229 250 16 16 chrX 27344881 27344945 -135254985 + Charlie7 DNA MER1_type 1800 1863 -749 261 83 0 0 chrX 27345723 27345759 -135254171 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 486 0 0 0 chrX 27345759 27345813 -135254117 + (TG)n Simple_repeat Simple_repeat 2 55 0 429 225 121 75 chrX 27345836 27346076 -135253854 - MLT1L LTR MaLR -353 262 12 1038 170 0 0 chrX 27346282 27346453 -135253477 + AluSg/x SINE Alu 137 307 -5 600 257 127 46 chrX 27346505 27346789 -135253141 + Charlie7 DNA MER1_type 50 356 -2256 * 1445 258 69 42 chrX 27346785 27347467 -135252463 + Charlie7 DNA MER1_type 1471 2170 -442 2191 120 0 0 chrX 27347601 27347901 -135252029 - AluSx SINE Alu -12 300 1 237 83 0 0 chrX 27348433 27348469 -135251461 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 2140 106 3 0 chrX 27348605 27348926 -135251004 + AluSq SINE Alu 1 322 0 292 287 72 29 chrX 27349399 27349608 -135250322 - MER31-int LTR ERV1 -3021 1915 1698 327 194 0 0 chrX 27349796 27349868 -135250062 + L1PB1 LINE L1 129 200 -6663 13807 178 35 15 chrX 27349868 27353425 -135246505 + L1PB1 LINE L1 634 4472 -2395 2494 66 3 0 chrX 27353425 27353727 -135246203 + AluSp SINE Alu 1 303 -10 13807 178 35 15 chrX 27353727 27356173 -135243757 + L1PB1 LINE L1 4472 6867 0 1063 209 117 33 chrX 27357093 27357485 -135242445 - LTR37A LTR ERV1 -1 425 1 186 334 68 60 chrX 27357907 27358260 -135241670 - L2 LINE L2 -2424 890 535 322 316 38 29 chrX 27358950 27359159 -135240771 + MIR SINE MIR 38 248 -14 1266 173 31 0 chrX 27360580 27360806 -135239124 + MSTA LTR MaLR 1 233 -195 1224 140 11 0 chrX 27360917 27361103 -135238827 + MSTA LTR MaLR 232 419 -9 348 284 169 22 chrX 27361123 27361306 -135238624 - MIR SINE MIR -13 249 40 455 248 0 34 chrX 27361460 27361577 -135238353 + L2 LINE L2 3200 3312 -1 237 333 197 27 chrX 27361738 27361885 -135238045 - MER5A DNA MER1_type -2 187 16 515 280 15 8 chrX 27362560 27362692 -135237238 + L2 LINE L2 3181 3313 0 1645 132 47 38 chrX 27363212 27363553 -135236377 - L1MA8 LINE L1 -3 6288 5945 5498 181 43 8 chrX 27363830 27364979 -135234951 + L1MB1 LINE L1 4127 5373 -795 216 67 0 0 chrX 27364979 27365009 -135234921 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5498 181 43 8 chrX 27365009 27365834 -135234096 + L1MB1 LINE L1 5373 6167 -1 1403 277 29 50 chrX 27365847 27366024 -135233906 - L2 LINE L2 -1201 2113 1934 1621 169 4 4 chrX 27366024 27366284 -135233646 + AluJb SINE Alu 1 260 -52 1403 277 29 50 chrX 27366284 27366652 -135233278 - L2 LINE L2 -1380 1934 1579 6367 14 0 0 chrX 27367062 27367793 -135232137 - L1P LINE L1 -1409 4737 4007 6145 13 0 0 chrX 27367793 27368528 -135231402 + L1PA2 LINE L1 5460 6198 0 204 40 0 0 chrX 27368576 27368601 -135231329 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 939 289 53 7 chrX 27368797 27369081 -135230849 + MER110 LTR ERV1 188 484 -7 496 333 18 6 chrX 27369434 27369602 -135230328 + MIR3 SINE MIR 20 189 -19 25 0 0 0 chrX 27369620 27369645 -135230285 + AT_rich Low_complexity Low_complexity 1 25 0 299 254 0 93 chrX 27370248 27370366 -135229564 + MLT1H LTR MaLR 430 536 -13 464 195 81 86 chrX 27371901 27372075 -135227855 + MLT1H LTR MaLR 377 549 0 25 31 0 0 chrX 27372234 27372266 -135227664 + AT_rich Low_complexity Low_complexity 1 32 0 664 336 50 0 chrX 27372427 27372647 -135227283 - MIR SINE MIR -24 238 8 851 194 12 6 chrX 27372820 27372980 -135226950 - MER5B DNA MER1_type -17 161 1 388 265 107 52 chrX 27374599 27374758 -135225172 - MER5A DNA MER1_type -18 160 7 2041 217 72 25 chrX 27375157 27375686 -135224244 + MLT2B3 LTR ERVL 1 554 0 3583 144 46 0 chrX 27375686 27376291 -135223639 + MSTA-int LTR MaLR 1 633 -1018 1328 113 5 5 chrX 27376292 27376496 -135223434 + MSTA-int LTR MaLR 1448 1651 0 1862 139 144 51 chrX 27376499 27376888 -135223042 + MSTA LTR MaLR 4 428 0 1987 171 37 0 chrX 27377590 27377942 -135221988 + MLT1A1 LTR MaLR 1 365 0 270 277 20 20 chrX 27378140 27378241 -135221689 + MER103 DNA DNA 65 165 -1 216 245 57 0 chrX 27378933 27378986 -135220944 + L2 LINE L2 3258 3313 0 2350 56 0 7 chrX 27379633 27379939 -135219991 - AluY SINE Alu 0 304 1 188 205 0 0 chrX 27381490 27381529 -135218401 + MIR SINE MIR 77 115 -147 352 305 7 40 chrX 27383575 27383726 -135216204 - L1MCa LINE L1 -4835 1591 1446 251 280 30 50 chrX 27383726 27383826 -135216104 - HAL1 LINE L1 -1121 1386 1289 659 206 0 23 chrX 27384424 27384555 -135215375 - FLAM_A SINE Alu -5 137 10 2428 50 30 0 chrX 27384640 27384937 -135214993 + AluY SINE Alu 1 306 -5 278 288 18 63 chrX 27384963 27385185 -135214745 - L1ME LINE L1 -335 5829 5618 296 284 135 12 chrX 27385227 27385449 -135214481 - L1ME LINE L1 -659 5505 5258 1359 182 65 59 chrX 27385798 27386122 -135213808 + MLT1D LTR MaLR 180 505 0 260 186 0 0 chrX 27387846 27387889 -135212041 + MLT1I LTR MaLR 363 405 -4 692 120 0 51 chrX 27388610 27388698 -135211232 + FLAM_C SINE Alu 32 114 -198 1195 7 0 14 chrX 27388698 27388844 -135211086 + (TAGA)n Simple_repeat Simple_repeat 1 144 0 692 120 0 51 chrX 27388844 27388872 -135211058 + FLAM_C SINE Alu 114 142 -170 3211 254 68 12 chrX 27389010 27391297 -135208633 + L1MA9 LINE L1 1 2131 -4081 2045 182 25 19 chrX 27391286 27391719 -135208211 + L1MA9 LINE L1 3451 3886 -2324 * 5782 162 25 19 chrX 27391712 27393514 -135206416 + L1MA9 LINE L1 4556 6376 0 354 317 130 31 chrX 27393881 27394042 -135205888 + MER5B DNA MER1_type 1 177 -1 2106 129 7 0 chrX 27394210 27394512 -135205418 - AluSq SINE Alu -9 304 1 21 0 0 0 chrX 27396539 27396560 -135203370 + AT_rich Low_complexity Low_complexity 1 21 0 4545 184 72 184 chrX 27396764 27398082 -135201848 + L1MCa LINE L1 3 1197 -4848 525 154 0 19 chrX 27398280 27398384 -135201546 + L1MB3 LINE L1 6080 6181 -2 2442 169 47 78 chrX 27398519 27399182 -135200748 - LTR48B LTR ERV1 0 644 3 511 197 49 0 chrX 27399194 27399316 -135200614 + L1MA9 LINE L1 6177 6304 -8 23 0 0 0 chrX 27399409 27399432 -135200498 + AT_rich Low_complexity Low_complexity 1 23 0 2364 167 51 6 chrX 27399597 27400069 -135199861 + L1MB3 LINE L1 5688 6180 -3 228 378 18 9 chrX 27400083 27400194 -135199736 + L2 LINE L2 2540 2651 -663 2114 30 56 11 chrX 27400400 27400700 -135199230 + AluY SINE Alu 1 312 0 2704 184 53 9 chrX 27401261 27401788 -135198142 - MER44D DNA MER2_type 0 605 1 31 0 0 0 chrX 27403668 27403699 -135196231 + AT_rich Low_complexity Low_complexity 1 31 0 206 146 0 24 chrX 27404383 27404424 -135195506 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1147 134 37 28 chrX 27404712 27404929 -135195001 - MER20 DNA MER1_type 0 219 1 1441 243 60 21 chrX 27405040 27405522 -135194408 + L1ME3 LINE L1 5647 6147 -15 576 0 0 0 chrX 27405636 27405700 -135194230 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 1927 176 15 53 chrX 27405701 27406099 -135193831 - MLT1B LTR MaLR -3 387 5 375 89 0 0 chrX 27406099 27406155 -135193775 + (CA)n Simple_repeat Simple_repeat 1 56 0 466 313 54 20 chrX 27406194 27406423 -135193507 - MIR SINE MIR -25 237 2 244 218 0 18 chrX 27407208 27407263 -135192667 - MIR SINE MIR -111 151 98 313 363 45 32 chrX 27407559 27407716 -135192214 - L2 LINE L2 0 3272 3114 306 0 0 0 chrX 27407729 27407763 -135192167 + (GA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chrX 27408912 27408933 -135190997 + AT_rich Low_complexity Low_complexity 1 21 0 7796 193 26 10 chrX 27408937 27410981 -135188949 - L1PA16 LINE L1 -5 6161 4061 2645 114 46 7 chrX 27410981 27411393 -135188537 - MSTA LTR MaLR 0 428 1 7796 193 26 10 chrX 27411393 27411936 -135187994 - L1PA16 LINE L1 -2105 4061 3529 2265 97 7 3 chrX 27412241 27412550 -135187380 + AluSx SINE Alu 1 310 -2 33 43 0 0 chrX 27412687 27412734 -135187196 + AT_rich Low_complexity Low_complexity 1 47 0 661 231 78 112 chrX 27412957 27413368 -135186562 - HAL1b LINE L1 -370 978 582 445 304 7 7 chrX 27413565 27413700 -135186230 - HAL1 LINE L1 -758 1749 1615 33 25 0 0 chrX 27413856 27413896 -135186034 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrX 27413907 27413929 -135186001 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 27414097 27414118 -135185812 + AT_rich Low_complexity Low_complexity 1 21 0 302 340 108 42 chrX 27414886 27415127 -135184803 - L3b LINE CR1 -17 1566 1310 227 315 0 56 chrX 27415205 27415294 -135184636 - LTR16A1 LTR ERVL -9 448 365 222 333 0 0 chrX 27415641 27415716 -135184214 + MIR SINE MIR 122 196 -66 1829 173 0 6 chrX 27415716 27415894 -135184036 - AluJb SINE Alu -1 311 134 2482 37 3 3 chrX 27415894 27416192 -135183738 - AluY SINE Alu -13 298 1 1829 173 0 6 chrX 27416192 27416326 -135183604 - AluJb SINE Alu -178 134 1 1197 224 137 31 chrX 27416675 27417033 -135182897 - MSTD LTR MaLR 0 396 1 3241 200 33 8 chrX 27417066 27417790 -135182140 + L1MB8 LINE L1 5437 6178 0 1795 200 34 48 chrX 27418817 27419291 -135180639 + MLT1C LTR MaLR 1 467 0 414 336 108 9 chrX 27419843 27420057 -135179873 - MIR SINE MIR 0 262 28 1390 211 38 41 chrX 27420283 27420625 -135179305 + LTR16C LTR ERVL 151 491 0 23 0 0 0 chrX 27420683 27420706 -135179224 + AT_rich Low_complexity Low_complexity 1 23 0 180 231 46 62 chrX 27420838 27420903 -135179027 - MIR SINE MIR -2 260 197 2101 201 19 111 chrX 27420931 27421263 -135178667 - L1MC4 LINE L1 0 8042 7814 2217 86 7 26 chrX 27421263 27421567 -135178363 - AluSx SINE Alu -14 298 1 2101 201 19 111 chrX 27421567 27421970 -135177960 - L1MC4 LINE L1 -228 7814 7375 814 240 106 17 chrX 27421970 27422253 -135177677 + MLT1E1 LTR MaLR 1 289 -365 529 240 32 0 chrX 27422281 27422406 -135177524 + MLT1E3 LTR MaLR 496 624 0 2239 266 74 34 chrX 27422440 27423254 -135176676 - L1MC4a LINE L1 -753 5393 5029 2168 94 40 3 chrX 27423254 27423552 -135176378 + AluSc SINE Alu 1 309 0 2239 266 74 34 chrX 27423552 27424486 -135175444 - L1MC4a LINE L1 -1117 5029 4134 722 254 88 45 chrX 27425529 27425859 -135174071 - MARNA DNA Mariner -202 384 41 244 45 0 45 chrX 27427944 27427988 -135171942 + (GA)n Simple_repeat Simple_repeat 1 42 0 1581 198 0 22 chrX 27428418 27428731 -135171199 + AluJb SINE Alu 1 306 -6 23 0 0 0 chrX 27429649 27429672 -135170258 + AT_rich Low_complexity Low_complexity 1 23 0 180 77 0 0 chrX 27430143 27430169 -135169761 + (TAA)n Simple_repeat Simple_repeat 2 27 0 200 265 102 0 chrX 27430772 27430821 -135169109 - L2 LINE L2 -14 3299 3246 566 292 77 5 chrX 27430879 27431088 -135168842 - LTR16C LTR ERVL -31 460 237 235 262 174 34 chrX 27431442 27431591 -135168339 + MIR SINE MIR 23 192 -70 2076 273 80 44 chrX 27431594 27432417 -135167513 + L2 LINE L2 2236 3088 -225 551 245 155 7 chrX 27432463 27432618 -135167312 + MER5A DNA MER1_type 9 186 -3 450 290 59 16 chrX 27432631 27432817 -135167113 + L2 LINE L2 3120 3313 0 239 196 22 33 chrX 27433519 27433611 -135166319 + (TA)n Simple_repeat Simple_repeat 2 92 0 984 268 62 25 chrX 27433729 27434416 -135165514 + L1ME3A LINE L1 5107 5984 -186 1618 166 7 31 chrX 27434893 27435183 -135164747 + AluJb SINE Alu 1 283 -29 2766 143 39 41 chrX 27435183 27435723 -135164207 + L1MD1 LINE L1 5704 6242 0 2142 108 0 3 chrX 27436130 27436425 -135163505 + AluSx SINE Alu 2 295 -17 325 287 39 12 chrX 27437345 27437555 -135162375 + L1MC/D LINE L1 5663 5879 -242 21 0 0 0 chrX 27438770 27438791 -135161139 + AT_rich Low_complexity Low_complexity 1 21 0 358 380 51 11 chrX 27439051 27439325 -135160605 + L3 LINE CR1 602 886 -691 184 326 132 28 chrX 27439597 27439741 -135160189 - L2 LINE L2 -1 3312 3154 277 329 47 0 chrX 27439750 27439835 -135160095 + L3 LINE CR1 1374 1462 -115 261 163 0 0 chrX 27441176 27441225 -135158705 + (TG)n Simple_repeat Simple_repeat 1 49 0 283 325 148 48 chrX 27441298 27441427 -135158503 + MIR SINE MIR 23 182 -80 1443 214 25 42 chrX 27441427 27441829 -135158101 + MLT2C1 LTR ERVL 1 395 -2 283 325 148 48 chrX 27441829 27441908 -135158022 + MIR SINE MIR 182 252 -10 690 241 86 0 chrX 27443273 27443447 -135156483 + AluJo SINE Alu 85 273 -39 575 162 52 17 chrX 27443451 27443624 -135156306 + GA-rich Low_complexity Low_complexity 2 180 0 34 0 0 0 chrX 27443640 27443674 -135156256 + AT_rich Low_complexity Low_complexity 1 34 0 3931 181 11 16 chrX 27443678 27444373 -135155557 + L1MA4 LINE L1 2 693 -4635 258 136 0 0 chrX 27444393 27444437 -135155493 + (GGA)n Simple_repeat Simple_repeat 3 46 0 5381 210 32 13 chrX 27444437 27446761 -135153169 + L1MA4 LINE L1 680 3046 -3282 932 120 0 40 chrX 27446771 27446921 -135153009 + AluSg/x SINE Alu 154 297 -15 1666 192 3 6 chrX 27446928 27447240 -135152690 + AluJb SINE Alu 1 311 -1 12147 161 24 39 chrX 27447241 27447539 -135152391 + L1MA4 LINE L1 3043 3344 -3138 207 0 0 0 chrX 27447539 27447562 -135152368 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 12147 161 24 39 chrX 27447562 27450598 -135149332 + L1MA4 LINE L1 3344 6322 -160 2282 98 0 16 chrX 27450598 27450914 -135149016 + AluSx SINE Alu 1 311 -1 12147 161 24 39 chrX 27450914 27451067 -135148863 + L1MA4 LINE L1 6322 6476 -6 225 242 5 89 chrX 27452312 27452502 -135147428 + A-rich Low_complexity Low_complexity 5 178 0 2109 192 43 31 chrX 27454193 27454615 -135145315 - MSTA LTR MaLR -1 427 1 341 94 0 31 chrX 27454970 27455034 -135144896 + (CAGAGA)n Simple_repeat Simple_repeat 2 63 0 2695 135 29 27 chrX 27456445 27456678 -135143252 + L1PA16 LINE L1 5694 5925 -241 2050 108 0 27 chrX 27456678 27456973 -135142957 + AluSg SINE Alu 1 287 -23 2695 135 29 27 chrX 27456973 27457202 -135142728 + L1PA16 LINE L1 5925 6157 -9 2012 200 35 71 chrX 27458053 27458572 -135141358 + MLT1D LTR MaLR 1 500 -5 226 213 21 0 chrX 27460000 27460047 -135139883 + (CA)n Simple_repeat Simple_repeat 2 49 0 1897 132 10 3 chrX 27460329 27460625 -135139305 - AluSx SINE Alu -11 301 4 35 0 0 0 chrX 27460654 27460689 -135139241 + AT_rich Low_complexity Low_complexity 1 35 0 380 333 143 22 chrX 27460701 27460974 -135138956 - L2 LINE L2 0 3313 3008 322 208 65 0 chrX 27461540 27461617 -135138313 - L1MA9 LINE L1 -2 6310 6229 1048 261 20 33 chrX 27461617 27461920 -135138010 + MER101B LTR ERV1 1 299 -271 410 136 25 12 chrX 27462076 27462157 -135137773 - L1MA9 LINE L1 -62 6250 6169 720 141 89 0 chrX 27462276 27462411 -135137519 - L1MA9 LINE L1 -119 6193 6047 2291 93 0 0 chrX 27462420 27462721 -135137209 - AluSc SINE Alu -8 301 1 229 326 31 20 chrX 27462992 27463090 -135136840 + MER91A DNA MER1_type 17 115 -81 665 272 40 6 chrX 27463834 27464007 -135135923 + MER5A DNA MER1_type 9 187 -2 225 0 0 0 chrX 27464241 27464266 -135135664 + (T)n Simple_repeat Simple_repeat 1 25 0 286 273 70 70 chrX 27464604 27464732 -135135198 - MER5B DNA MER1_type -50 128 1 528 206 191 0 chrX 27464777 27464908 -135135022 - MER5A DNA MER1_type -1 188 33 205 234 62 16 chrX 27464918 27464982 -135134948 - MER5A DNA MER1_type -2 187 121 383 317 8 8 chrX 27465403 27465523 -135134407 + MIR SINE MIR 143 262 0 476 299 97 19 chrX 27465931 27466138 -135133792 + L2 LINE L2 3005 3227 -86 * 687 261 148 70 chrX 27466136 27466391 -135133539 + L2 LINE L2 2901 3195 -118 934 215 96 40 chrX 27466391 27466745 -135133185 + MLT1A2 LTR MaLR 1 374 0 687 261 148 70 chrX 27466745 27466861 -135133069 + L2 LINE L2 3195 3301 -12 1785 160 0 13 chrX 27466886 27467186 -135132744 + AluJb SINE Alu 1 296 -16 374 233 0 0 chrX 27468052 27468138 -135131792 + L1MC5 LINE L1 7822 7907 -54 252 274 74 22 chrX 27468207 27468342 -135131588 + L1MC4a LINE L1 5772 5913 -1895 607 261 53 83 chrX 27468375 27468639 -135131291 - MIR SINE MIR -5 257 2 362 59 0 0 chrX 27468999 27469050 -135130880 + MADE1 DNA Mariner 29 79 -1 327 146 0 0 chrX 27470556 27470611 -135129319 + (TA)n Simple_repeat Simple_repeat 2 56 0 3471 89 14 12 chrX 27470844 27471351 -135128579 + L1PB2 LINE L1 5642 6149 -2 1926 128 3 20 chrX 27471447 27471751 -135128179 - AluJb SINE Alu -13 299 1 1304 289 80 42 chrX 27471783 27472761 -135127169 - L2 LINE L2 -33 3280 2284 303 246 186 0 chrX 27472811 27472929 -135127001 - L1M4 LINE L1 -695 5489 5350 829 234 57 55 chrX 27473072 27473320 -135126610 + MIR SINE MIR 13 259 -3 221 356 40 20 chrX 27473568 27473717 -135126213 - MIR SINE MIR -2 260 109 2140 13 0 0 chrX 27473771 27474009 -135125921 + AluYb8 SINE Alu 73 310 -8 369 256 0 0 chrX 27474014 27474100 -135125830 + MIR SINE MIR 177 262 0 238 315 141 0 chrX 27474112 27474204 -135125726 - L2 LINE L2 -14 3258 3154 182 317 61 12 chrX 27474306 27474388 -135125542 - L2 LINE L2 0 3313 3228 187 273 114 34 chrX 27474666 27474754 -135125176 - L3b LINE CR1 -2 1581 1487 266 279 89 0 chrX 27475786 27475865 -135124065 - L2 LINE L2 -4 3309 3224 2287 149 70 12 chrX 27476014 27476416 -135123514 + MSTB LTR MaLR 2 426 0 333 276 276 0 chrX 27476429 27476563 -135123367 - MIR SINE MIR -59 203 33 199 361 60 0 chrX 27477161 27477244 -135122686 - L2 LINE L2 -198 3074 2987 1966 199 80 16 chrX 27477470 27477908 -135122022 + MLT1C LTR MaLR 2 467 0 630 259 125 14 chrX 27478028 27478244 -135121686 - MIR SINE MIR -10 252 13 923 317 52 29 chrX 27478399 27478882 -135121048 - L2 LINE L2 -1054 2260 1767 1716 157 35 3 chrX 27478882 27479194 -135120736 + L1MB7 LINE L1 5704 6025 -159 472 171 72 18 chrX 27479194 27479305 -135120625 + MER4A LTR ERV1 1 117 -547 619 229 124 39 chrX 27479450 27479829 -135120101 + MER4C LTR ERV1 257 460 -5 588 174 17 0 chrX 27479830 27479945 -135119985 + L1MB7 LINE L1 6018 6134 -50 1497 203 10 7 chrX 27479946 27480236 -135119694 + AluJo SINE Alu 1 291 -21 28 61 0 0 chrX 27480236 27480285 -135119645 + AT_rich Low_complexity Low_complexity 1 49 0 2141 113 3 3 chrX 27482719 27483029 -135116901 + AluSq SINE Alu 1 310 -3 290 349 78 8 chrX 27483123 27483252 -135116678 + MIR3 SINE MIR 35 172 -36 455 238 36 57 chrX 27483253 27483446 -135116484 + LTR28 LTR ERV1 823 1011 -9 840 228 22 0 chrX 27483805 27483989 -135115941 - MER5A DNA MER1_type 0 189 2 797 148 66 33 chrX 27484714 27484896 -135115034 - MER53 DNA DNA 0 189 2 606 263 26 13 chrX 27485003 27485155 -135114775 + MER5B DNA MER1_type 23 176 -2 784 229 6 6 chrX 27485179 27485354 -135114576 + MER5B DNA MER1_type 1 175 -3 1750 181 0 3 chrX 27485466 27485754 -135114176 - AluJo SINE Alu -23 289 3 3209 115 20 2 chrX 27485794 27486289 -135113641 - L1PA15 LINE L1 -10 6155 5652 316 197 76 0 chrX 27486489 27486555 -135113375 - MER91C DNA MER1_type -32 108 38 819 294 69 26 chrX 27486795 27487211 -135112719 - MLT1F LTR MaLR -81 461 20 2532 230 30 81 chrX 27488845 27490077 -135109853 - L1MA10 LINE L1 -4 6330 5008 2010 143 61 0 chrX 27490862 27491241 -135108689 + L1MA8 LINE L1 5887 6288 -3 652 221 77 99 chrX 27491803 27492025 -135107905 + MER58A DNA MER1_type 2 218 -6 867 150 0 0 chrX 27492025 27492158 -135107772 + FLAM_C SINE Alu 1 133 0 288 23 23 23 chrX 27492245 27492288 -135107642 - MADE1 DNA Mariner 0 80 38 855 138 147 41 chrX 27492573 27492791 -135107139 + L1PA16 LINE L1 5117 5357 -789 557 136 0 11 chrX 27492798 27492886 -135107044 + AluS SINE Alu 1 87 -225 4268 118 93 35 chrX 27492887 27493652 -135106278 + L1PA16 LINE L1 5357 6165 -1 186 43 0 0 chrX 27493724 27493747 -135106183 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 1584 188 0 4 chrX 27493747 27494023 -135105907 - AluJo SINE Alu -32 280 6 272 349 28 28 chrX 27494249 27494358 -135105572 + L2 LINE L2 3205 3313 0 1093 88 0 0 chrX 27495653 27495801 -135104129 - L1PA10 LINE L1 -15 6153 6006 790 256 169 0 chrX 27496528 27496794 -135103136 + Charlie2 DNA MER1_type 8 318 -2544 335 266 62 8 chrX 27496988 27497116 -135102814 + Charlie2 DNA MER1_type 2727 2861 -1 475 192 115 64 chrX 27497122 27497278 -135102652 + MER5B DNA MER1_type 8 171 -7 2175 69 4 4 chrX 27497687 27497962 -135101968 + AluSx SINE Alu 34 308 -4 411 239 18 18 chrX 27498157 27498266 -135101664 - L2 LINE L2 -8 3305 3197 252 184 0 0 chrX 27499207 27499256 -135100674 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 2079 132 0 22 chrX 27499384 27499703 -135100227 + AluSx SINE Alu 1 312 0 25 51 0 0 chrX 27500173 27500212 -135099718 + AT_rich Low_complexity Low_complexity 1 39 0 1098 204 0 5 chrX 27500341 27500537 -135099393 + MER58A DNA MER1_type 11 205 -19 24 0 0 0 chrX 27500652 27500676 -135099254 + AT_rich Low_complexity Low_complexity 1 24 0 399 89 0 0 chrX 27501097 27501153 -135098777 + (TG)n Simple_repeat Simple_repeat 1 56 0 400 245 49 68 chrX 27501627 27501790 -135098140 + MIR SINE MIR 44 203 -59 1826 169 43 27 chrX 27501790 27502158 -135097772 + MLT1A2 LTR MaLR 1 374 0 189 383 133 20 chrX 27502822 27503018 -135096912 + L2 LINE L2 2866 3083 -189 21 36 0 0 chrX 27503787 27503815 -135096115 + AT_rich Low_complexity Low_complexity 1 28 0 245 220 60 0 chrX 27504005 27504055 -135095875 + MER63 DNA MER1_type 1010 1062 0 22 0 0 0 chrX 27504515 27504537 -135095393 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 27506146 27506169 -135093761 + AT_rich Low_complexity Low_complexity 1 23 0 475 156 100 0 chrX 27506355 27506445 -135093485 - AluJ/FLAM SINE Alu -213 99 1 678 255 52 95 chrX 27506450 27506507 -135093423 + MLT1H LTR MaLR 3 61 -488 2225 128 0 0 chrX 27506507 27506819 -135093111 - AluSx SINE Alu 0 312 1 678 255 52 95 chrX 27506819 27507087 -135092843 + MLT1H LTR MaLR 61 314 -235 355 236 72 85 chrX 27507111 27507258 -135092672 + MLT1H LTR MaLR 436 549 0 267 93 0 0 chrX 27507614 27507657 -135092273 + (GA)n Simple_repeat Simple_repeat 1 43 0 1593 205 0 19 chrX 27507988 27508305 -135091625 - AluJo SINE Alu -1 311 1 1046 121 0 12 chrX 27508369 27508534 -135091396 - L1PB1 LINE L1 -3 6148 5986 1460 167 0 0 chrX 27508537 27508794 -135091136 - L1 LINE L1 -1224 4922 4666 681 181 36 18 chrX 27508866 27509032 -135090898 + L1MC4a LINE L1 7640 7808 0 315 0 0 0 chrX 27510853 27510888 -135089042 + (CA)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chrX 27511007 27511027 -135088903 + (A)n Simple_repeat Simple_repeat 1 20 0 377 306 102 42 chrX 27511364 27511626 -135088304 + MLT1H LTR MaLR 50 286 -123 4866 253 52 22 chrX 27511981 27513544 -135086386 + L1MB7 LINE L1 2615 4224 -1922 21 0 0 0 chrX 27513774 27513795 -135086135 + AT_rich Low_complexity Low_complexity 1 21 0 3201 170 40 58 chrX 27515321 27516069 -135083861 + L1MB7 LINE L1 5427 6161 -23 33 80 0 0 chrX 27516756 27516831 -135083099 + AT_rich Low_complexity Low_complexity 1 75 0 536 263 108 44 chrX 27517086 27517496 -135082434 + L1ME LINE L1 5358 5779 -342 274 227 31 31 chrX 27517586 27517683 -135082247 + HAL1b LINE L1 1196 1292 -56 1015 191 30 30 chrX 27517687 27517923 -135082007 + MER106A DNA MER1_type 1 236 0 2127 175 61 51 chrX 27518240 27518749 -135081181 - MER67D LTR ERV1 0 514 1 24 0 0 0 chrX 27520066 27520090 -135079840 + AT_rich Low_complexity Low_complexity 1 24 0 324 238 10 20 chrX 27520102 27520203 -135079727 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 273 163 0 0 chrX 27520252 27520301 -135079629 + (CA)n Simple_repeat Simple_repeat 2 50 0 186 71 0 0 chrX 27520739 27520767 -135079163 + (GA)n Simple_repeat Simple_repeat 1 28 0 664 132 0 62 chrX 27520822 27520951 -135078979 + FLAM_C SINE Alu 9 129 -14 389 70 18 0 chrX 27520952 27521009 -135078921 + (CA)n Simple_repeat Simple_repeat 2 59 0 277 281 16 0 chrX 27521674 27521738 -135078192 + MER5A DNA MER1_type 124 188 -1 1531 179 92 158 chrX 27522785 27523555 -135076375 + LTR8A LTR ERV1 1 719 -8 21 0 0 0 chrX 27523864 27523885 -135076045 + AT_rich Low_complexity Low_complexity 1 21 0 502 328 59 0 chrX 27524161 27524347 -135075583 - MIR SINE MIR -4 258 62 298 318 99 30 chrX 27524385 27524618 -135075312 + MIR SINE MIR 8 256 -6 1950 135 18 0 chrX 27525004 27525285 -135074645 + AluJb SINE Alu 1 286 -26 498 313 45 0 chrX 27525811 27525990 -135073940 + MIR SINE MIR 42 228 -34 2210 192 75 37 chrX 27526121 27526683 -135073247 + MER92B LTR ERV1 2 584 -52 298 246 54 77 chrX 27527025 27527155 -135072775 + MIR SINE MIR 135 261 -1 3279 128 15 89 chrX 27527406 27528065 -135071865 - MER4B LTR ERV1 0 610 1 210 337 96 0 chrX 27528109 27528192 -135071738 - MIR SINE MIR -6 256 166 1139 191 89 36 chrX 27528453 27528989 -135070941 + LTR29 LTR ERV1 1 593 -2 1457 172 11 36 chrX 27529386 27529748 -135070182 + MER61B LTR ERV1 1 425 0 29 28 0 0 chrX 27530024 27530060 -135069870 + AT_rich Low_complexity Low_complexity 1 36 0 447 271 144 44 chrX 27530622 27530982 -135068948 - MLT1J2 LTR MaLR -5 445 71 2343 95 0 0 chrX 27531258 27531554 -135068376 + AluSq SINE Alu 1 296 -17 195 214 89 0 chrX 27531722 27531778 -135068152 - MER5C DNA MER1_type -1 323 263 23 0 0 0 chrX 27532430 27532453 -135067477 + AT_rich Low_complexity Low_complexity 1 23 0 2361 74 0 10 chrX 27532453 27532752 -135067178 + AluSg SINE Alu 1 296 -14 324 0 0 0 chrX 27532752 27532788 -135067142 + (TA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chrX 27533949 27533978 -135065952 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 27534158 27534187 -135065743 + AT_rich Low_complexity Low_complexity 1 29 0 1889 109 47 18 chrX 27534319 27534616 -135065314 - AluSx SINE Alu 0 305 1 2366 89 0 3 chrX 27535160 27535464 -135064466 + AluSg SINE Alu 1 303 -7 233 258 15 0 chrX 27535491 27535557 -135064373 + (TA)n Simple_repeat Simple_repeat 1 67 0 1436 153 0 9 chrX 27536219 27536441 -135063489 - AluJb SINE Alu -91 221 2 1403 151 15 15 chrX 27536501 27536772 -135063158 - L1MB4 LINE L1 0 6180 5910 219 218 0 0 chrX 27536944 27536999 -135062931 + (TA)n Simple_repeat Simple_repeat 1 55 0 22 0 0 54 chrX 27537190 27537206 -135062724 + AT_rich Low_complexity Low_complexity 1 16 -19 2767 16 0 0 chrX 27537206 27537523 -135062407 + L1PA4 LINE L1 5837 6153 -2 22 0 0 54 chrX 27537523 27537543 -135062387 + AT_rich Low_complexity Low_complexity 16 35 0 2499 94 37 3 chrX 27537564 27537916 -135062014 - THE1B LTR MaLR 0 364 1 1219 168 48 81 chrX 27538217 27538551 -135061379 - MER33 DNA MER1_type -1 323 1 2194 123 7 0 chrX 27538590 27538890 -135061040 - AluSx SINE Alu -10 302 1 592 217 0 0 chrX 27539693 27539799 -135060131 - FLAM_C SINE Alu -35 108 3 336 146 37 98 chrX 27539809 27539891 -135060039 + MER74C LTR ERVL 4 80 -380 238 233 0 27 chrX 27540166 27540239 -135059691 - L1MEd LINE L1 -5990 129 59 2269 102 0 3 chrX 27540403 27540697 -135059233 - AluSc SINE Alu -15 294 2 2537 62 3 0 chrX 27540757 27541061 -135058869 + AluSp SINE Alu 1 305 -8 236 265 0 0 chrX 27541062 27541111 -135058819 + MIR SINE MIR 211 259 -3 22 0 0 0 chrX 27541112 27541134 -135058796 + AT_rich Low_complexity Low_complexity 1 22 0 467 275 10 3 chrX 27542007 27542152 -135057778 + MIR SINE MIR 16 160 -59 226 260 58 39 chrX 27543164 27543268 -135056662 + L1ME3A LINE L1 5584 5689 -481 341 261 83 29 chrX 27543290 27543531 -135056399 + L1ME3A LINE L1 5686 5947 -223 362 350 103 27 chrX 27543999 27544251 -135055679 + L3 LINE CR1 713 993 -584 379 89 0 208 chrX 27544251 27544352 -135055578 - MADE1 DNA Mariner 0 80 1 362 350 103 27 chrX 27544352 27544399 -135055531 + L3 LINE CR1 993 1035 -542 3250 200 161 34 chrX 27544411 27544478 -135055452 + L1MCa LINE L1 986 1043 -5383 2489 61 0 0 chrX 27544478 27544771 -135055159 - AluY SINE Alu -18 293 1 3250 200 161 34 chrX 27544771 27545215 -135054715 + L1MCa LINE L1 1043 1429 -4997 2652 42 0 0 chrX 27545215 27545521 -135054409 + AluYa5 SINE Alu 3 308 -3 3250 200 161 34 chrX 27545521 27545669 -135054261 + L1MCa LINE L1 1429 1557 -4869 2309 104 0 0 chrX 27545669 27545977 -135053953 + AluSg SINE Alu 3 310 0 3250 200 161 34 chrX 27545977 27546516 -135053414 + L1MCa LINE L1 1557 2339 -4087 * 9110 188 48 8 chrX 27546515 27547506 -135052424 + L1MC3 LINE L1 5860 6810 -975 210 71 0 0 chrX 27547506 27547534 -135052396 + (CA)n Simple_repeat Simple_repeat 2 29 0 9110 188 48 8 chrX 27547534 27548394 -135051536 + L1MC3 LINE L1 6810 7784 -1 228 308 43 51 chrX 27548536 27548653 -135051277 - L2 LINE L2 -237 3035 2920 1718 101 0 0 chrX 27548755 27548983 -135050947 + AluSq SINE Alu 71 298 -15 379 304 49 54 chrX 27550546 27550730 -135049200 - MIR SINE MIR -66 196 14 2244 96 0 3 chrX 27551038 27551340 -135048590 - AluSg SINE Alu -9 301 1 190 386 0 0 chrX 27555480 27555550 -135044380 - L2 LINE L2 -17 3255 3186 211 312 91 0 chrX 27555625 27555702 -135044228 + MIR SINE MIR 40 123 -139 329 384 113 24 chrX 27556164 27556456 -135043474 - L2 LINE L2 -86 3186 2869 258 364 128 46 chrX 27556507 27556922 -135043008 - L2 LINE L2 -561 2753 2305 207 69 0 0 chrX 27557143 27557172 -135042758 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 352 291 18 112 chrX 27557362 27557458 -135042472 + MIR SINE MIR 17 82 -180 2329 48 14 0 chrX 27557458 27557748 -135042182 + AluY SINE Alu 1 294 -17 352 291 18 112 chrX 27557748 27557874 -135042056 + MIR SINE MIR 82 218 -44 366 357 17 8 chrX 27558905 27559061 -135040869 - MIR3 SINE MIR -54 154 21 2317 104 0 0 chrX 27559689 27559987 -135039943 - AluSq SINE Alu -15 298 1 2429 77 0 0 chrX 27561504 27561804 -135038126 - AluY SINE Alu -11 300 1 2784 161 58 18 chrX 27561930 27562497 -135037433 - L1MB5 LINE L1 0 6174 5585 23 0 0 0 chrX 27562500 27562523 -135037407 + AT_rich Low_complexity Low_complexity 1 23 0 257 181 28 69 chrX 27562643 27562715 -135037215 + L2 LINE L2 3245 3313 0 198 0 0 0 chrX 27562750 27562772 -135037158 + (T)n Simple_repeat Simple_repeat 1 22 0 2113 137 0 0 chrX 27562862 27563168 -135036762 - AluSx SINE Alu -6 306 1 1929 154 3 0 chrX 27564036 27564335 -135035595 + AluJb SINE Alu 1 300 -12 386 221 131 25 chrX 27564337 27564459 -135035471 - L2 LINE L2 0 3313 3179 2875 157 40 10 chrX 27564502 27564551 -135035379 + L1MB4 LINE L1 5442 5488 -692 2215 103 0 10 chrX 27564551 27564853 -135035077 + AluSg1 SINE Alu 1 299 -10 2875 157 40 10 chrX 27564853 27565401 -135034529 + L1MB4 LINE L1 5488 6029 -151 3428 152 43 22 chrX 27564881 27565402 -135034528 + L1MB4 LINE L1 5491 6031 -149 2351 77 7 0 chrX 27565402 27565702 -135034228 - AluSp SINE Alu -7 306 5 3428 152 43 22 chrX 27565702 27565856 -135034074 + L1MB4 LINE L1 6031 6180 0 354 137 0 14 chrX 27565856 27565923 -135034007 + L1MB8 LINE L1 6100 6171 -7 296 301 115 0 chrX 27565961 27566074 -135033856 + L2 LINE L2 2174 2299 -1015 432 140 56 9 chrX 27566217 27566324 -135033606 - MER96B DNA MER1_type? -53 364 253 204 281 7 65 chrX 27566331 27566484 -135033446 + L2 LINE L2 3106 3249 -64 534 285 140 5 chrX 27566566 27566766 -135033164 + LTR33A LTR ERVL 297 523 0 249 266 119 37 chrX 27567545 27567654 -135032276 + MIR SINE MIR 72 189 -73 297 51 0 0 chrX 27568166 27568205 -135031725 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 312 27 0 0 chrX 27569008 27569045 -135030885 + (TA)n Simple_repeat Simple_repeat 2 38 0 1625 203 7 3 chrX 27569045 27569346 -135030584 - AluJb SINE Alu -10 302 1 803 165 0 0 chrX 27569349 27569506 -135030424 - FLAM_C SINE Alu 0 157 1 207 319 62 66 chrX 27569732 27569989 -135029941 + L2 LINE L2 1746 2001 -1313 2388 93 3 0 chrX 27570352 27570662 -135029268 + AluSp SINE Alu 1 311 -2 1092 161 29 33 chrX 27570779 27571021 -135028909 + L1MA5 LINE L1 5819 6059 -241 1174 362 10 24 chrX 27571021 27571606 -135028324 + L1PA13 LINE L1 788 1364 -6210 354 338 11 0 chrX 27571694 27571879 -135028051 + L1PA13 LINE L1 2084 2298 -5276 7670 174 16 196 chrX 27572112 27574206 -135025724 + L1PA16 LINE L1 2182 4650 -2954 1583 177 17 23 chrX 27574206 27574505 -135025425 + AluJb SINE Alu 1 297 -15 7670 174 16 196 chrX 27574505 27575414 -135024516 + L1PA16 LINE L1 4650 5720 -1884 2247 102 0 13 chrX 27575414 27575719 -135024211 + AluSq SINE Alu 2 302 -11 7670 174 16 196 chrX 27575719 27576473 -135023457 + L1PA16 LINE L1 5720 6607 -997 374 141 56 0 chrX 27576473 27576544 -135023386 + AluJ/FRAM SINE Alu 226 300 -2 7670 174 16 196 chrX 27576544 27576873 -135023057 + L1PA16 LINE L1 6607 6993 -611 628 186 23 0 chrX 27576873 27577002 -135022928 + AluJ SINE Alu 2 133 -169 7670 174 16 196 chrX 27577002 27579420 -135020510 + L1PA16 LINE L1 6993 7581 -23 2339 105 0 0 chrX 27579447 27579752 -135020178 + AluSx SINE Alu 1 305 -7 1748 82 4 0 chrX 27579753 27580009 -135019921 + L1MA5 LINE L1 6042 6298 -2 289 216 54 0 chrX 27580060 27580134 -135019796 - L1MC/D LINE L1 -2377 5431 5354 21 36 0 0 chrX 27580831 27580859 -135019071 + AT_rich Low_complexity Low_complexity 1 28 0 564 136 45 98 chrX 27581149 27581281 -135018649 + THE1C LTR MaLR 1 125 -250 240 35 0 0 chrX 27581913 27581942 -135017988 + (CAG)n Simple_repeat Simple_repeat 2 30 0 240 35 0 0 chrX 27582119 27582148 -135017782 + (CA)n Simple_repeat Simple_repeat 2 30 0 826 165 0 0 chrX 27582150 27582283 -135017647 + AluJ SINE Alu 1 133 -169 980 196 0 0 chrX 27582325 27582509 -135017421 + AluJ SINE Alu 129 312 0 1425 173 24 0 chrX 27582615 27582870 -135017060 + MER2 DNA MER2_type 85 345 0 278 160 20 20 chrX 27582873 27582973 -135016957 + (TA)n Simple_repeat Simple_repeat 1 100 0 2102 108 7 0 chrX 27583001 27583334 -135016596 + AluSx SINE Alu 2 336 0 2619 48 3 0 chrX 27584012 27584322 -135015608 + AluY SINE Alu 1 311 0 2208 103 0 29 chrX 27584810 27585122 -135014808 - AluSx SINE Alu -9 303 1 1925 131 44 7 chrX 27585167 27585465 -135014465 - AluJb SINE Alu -3 309 1 1859 143 22 74 chrX 27585997 27586288 -135013642 + MER2 DNA MER2_type 1 271 -73 2248 115 0 13 chrX 27586288 27586600 -135013330 - AluSx SINE Alu -2 310 3 1859 143 22 74 chrX 27586600 27586671 -135013259 + MER2 DNA MER2_type 271 344 0 2414 119 70 5 chrX 27586941 27587343 -135012587 + MSTA LTR MaLR 1 428 0 685 155 81 6 chrX 27587526 27587687 -135012243 + L1MB2 LINE L1 5996 6168 -3 785 268 66 5 chrX 27587772 27587970 -135011960 + MIR SINE MIR 6 215 -47 399 242 48 48 chrX 27588522 27588646 -135011284 - L2 LINE L2 0 3313 3190 279 0 0 0 chrX 27589305 27589336 -135010594 + (TG)n Simple_repeat Simple_repeat 2 32 0 307 260 0 14 chrX 27590068 27590141 -135009789 - L2 LINE L2 -4 3309 3238 616 316 126 5 chrX 27590551 27590766 -135009164 + MIR SINE MIR 16 256 -6 2187 101 0 14 chrX 27591845 27592142 -135007788 - AluSx SINE Alu -19 293 1 1013 133 17 0 chrX 27592145 27592326 -135007604 + L1MA7 LINE L1 6106 6289 -2 228 86 0 0 chrX 27592480 27592515 -135007415 + (CAGAGA)n Simple_repeat Simple_repeat 4 38 0 2027 181 21 7 chrX 27592556 27593193 -135006737 + MER39 LTR ERV1 4 707 0 314 320 91 24 chrX 27593944 27594254 -135005676 + L1M3 LINE L1 5466 5797 -383 240 86 0 0 chrX 27594281 27594316 -135005614 + (TG)n Simple_repeat Simple_repeat 2 36 0 231 218 0 0 chrX 27594354 27594409 -135005521 + (TA)n Simple_repeat Simple_repeat 2 56 0 200 237 0 17 chrX 27594715 27594774 -135005156 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 3168 125 52 24 chrX 27595578 27596115 -135003815 + MER34C LTR ERV1 34 585 0 1338 191 8 129 chrX 27596126 27596483 -135003447 + MER47B DNA MER2_type 1 314 -104 336 278 27 30 chrX 27596646 27596796 -135003134 + MIR SINE MIR 34 184 -67 382 268 52 46 chrX 27596858 27597011 -135002919 + MIR SINE MIR 100 253 -9 22 0 0 0 chrX 27597025 27597047 -135002883 + AT_rich Low_complexity Low_complexity 1 22 0 554 268 47 94 chrX 27598385 27598918 -135001012 + L1MEd LINE L1 488 995 -5124 316 336 45 0 chrX 27599392 27599526 -135000404 - MIR SINE MIR -23 239 100 3139 163 19 36 chrX 27599892 27600507 -134999423 - MER6A DNA MER2_type 0 605 1 297 0 0 0 chrX 27600654 27600687 -134999243 + (TA)n Simple_repeat Simple_repeat 2 34 0 220 259 129 12 chrX 27600744 27600829 -134999101 + L3 LINE CR1 1142 1236 -341 318 322 102 19 chrX 27601086 27601291 -134998639 + L3 LINE CR1 1217 1438 -139 4217 116 8 9 chrX 27601291 27601921 -134998009 + MER39B LTR ERV1 2 630 -23 244 373 97 22 chrX 27602228 27602413 -134997517 + L2 LINE L2 2418 2616 -698 4319 163 10 20 chrX 27602760 27603189 -134996741 + MER44D DNA MER2_type 2 293 -2194 1810 174 3 16 chrX 27603189 27603505 -134996425 + AluJb SINE Alu 1 312 0 4319 163 10 20 chrX 27603505 27603806 -134996124 + MER44D DNA MER2_type 293 596 -9 218 227 40 27 chrX 27604244 27604319 -134995611 - MIR SINE MIR -7 255 180 1038 189 11 0 chrX 27604545 27604736 -134995194 + MLT1D LTR MaLR 1 193 -312 715 289 105 23 chrX 27605382 27605869 -134994061 + L1MC/D LINE L1 5293 5819 -1989 2392 97 0 0 chrX 27605943 27606251 -134993679 + AluSg SINE Alu 1 308 -2 182 37 37 0 chrX 27606968 27606995 -134992935 + (TG)n Simple_repeat Simple_repeat 1 28 0 546 270 26 13 chrX 27608471 27608623 -134991307 + L2 LINE L2 3158 3311 -2 390 21 0 0 chrX 27608719 27608766 -134991164 + (CA)n Simple_repeat Simple_repeat 2 48 0 1227 90 0 0 chrX 27608772 27608927 -134991003 + AluSg SINE Alu 1 155 -155 2402 91 0 0 chrX 27809061 27809369 -134790561 - AluY SINE Alu -3 308 1 221 349 113 21 chrX 27809470 27809851 -134790079 + L2 LINE L2 1931 2346 -968 274 256 66 41 chrX 27809852 27809973 -134789957 - MLT2F LTR ERVL 0 663 540 431 127 0 0 chrX 27810073 27810128 -134789802 - AluSg/x SINE Alu -132 180 126 2359 67 3 7 chrX 27810129 27810427 -134789503 - AluY SINE Alu -14 297 1 1400 192 47 29 chrX 27810441 27810785 -134789145 - MER74A LTR ERVL -197 361 12 186 327 144 10 chrX 27811044 27811148 -134788782 + L2 LINE L2 3154 3271 -1 188 265 0 0 chrX 27811415 27811464 -134788466 - MIR3 SINE MIR -6 202 154 1834 150 23 7 chrX 27811617 27811924 -134788006 - AluJb SINE Alu 0 312 1 295 279 78 31 chrX 27812131 27812260 -134787670 - MER5A DNA MER1_type -6 183 49 217 371 8 23 chrX 27812142 27812274 -134787656 + MER5A DNA MER1_type 35 164 -25 * 1415 140 3 74 chrX 27812932 27813217 -134786713 + AluSc SINE Alu 32 296 -13 713 195 8 0 chrX 27813846 27813964 -134785966 - FLAM_C SINE Alu -23 120 2 2441 167 112 10 chrX 27814103 27814605 -134785325 + MER4D LTR ERV1 1 553 -350 22 77 0 0 chrX 27814608 27814634 -134785296 + AT_rich Low_complexity Low_complexity 1 26 0 225 94 0 0 chrX 27816894 27816926 -134783004 + (T)n Simple_repeat Simple_repeat 1 32 0 1759 70 0 0 chrX 27817042 27817257 -134782673 + AluY SINE Alu 93 307 -4 277 294 73 0 chrX 27817668 27817736 -134782194 + MER91A DNA MER1_type 119 191 -5 337 276 262 13 chrX 27818069 27818294 -134781636 - L2 LINE L2 0 3313 3033 294 73 0 0 chrX 27818462 27818503 -134781427 + (TG)n Simple_repeat Simple_repeat 2 42 0 180 200 0 0 chrX 27819420 27819465 -134780465 + (CCA)n Simple_repeat Simple_repeat 2 46 0 687 271 68 90 chrX 27820370 27820882 -134779048 - MLT1H LTR MaLR -7 542 42 231 327 40 0 chrX 27820953 27821054 -134778876 - MIR SINE MIR -75 187 83 192 383 32 40 chrX 27821553 27821804 -134778126 - L2 LINE L2 -14 3258 3010 341 203 14 0 chrX 27821902 27821971 -134777959 + MLT1J LTR MaLR 397 466 -45 380 146 49 49 chrX 27822731 27822813 -134777117 + L1MC4 LINE L1 7157 7238 -804 360 0 0 0 chrX 27822838 27822878 -134777052 + (GA)n Simple_repeat Simple_repeat 1 40 0 1537 99 0 9 chrX 27823042 27823263 -134776667 + AluSq SINE Alu 85 303 -10 4262 149 44 19 chrX 27823695 27824395 -134775535 + LTR62 LTR ERVK 1 718 -1 414 245 65 116 chrX 27824417 27824633 -134775297 + MLT1H LTR MaLR 231 435 -114 2474 263 76 42 chrX 27825126 27825618 -134774312 + L2 LINE L2 1918 2392 -922 1976 79 4 0 chrX 27825618 27825870 -134774060 - AluSq SINE Alu -3 310 58 2474 263 76 42 chrX 27825870 27825993 -134773937 + L2 LINE L2 2392 2509 -805 2156 159 42 3 chrX 27825993 27826327 -134773603 + MER7A DNA MER2_type 2 346 0 2474 263 76 42 chrX 27826327 27826567 -134773363 + L2 LINE L2 2509 2803 -511 1815 183 86 6 chrX 27826567 27826905 -134773025 + MLT1A1 LTR MaLR 1 365 0 4329 225 59 68 chrX 27826911 27828274 -134771656 + MLT1A1-int LTR MaLR 6 1357 -14 1687 213 18 34 chrX 27828286 27828666 -134771264 + MLT1A2 LTR MaLR 1 374 0 2207 108 0 25 chrX 27830534 27830849 -134769081 - AluSx SINE Alu 0 312 6 396 277 9 0 chrX 27830854 27830966 -134768964 + L1MC4 LINE L1 7806 7918 -124 582 139 55 0 chrX 27830966 27831131 -134768799 + (TA)n Simple_repeat Simple_repeat 2 175 0 1190 304 156 12 chrX 27831335 27832013 -134767917 + L2 LINE L2 1219 1994 -1320 492 197 8 68 chrX 27832017 27832149 -134767781 - L1MC4 LINE L1 0 8042 7919 207 0 0 0 chrX 27832153 27832176 -134767754 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 2733 232 75 33 chrX 27832198 27832365 -134767565 - L1MC4a LINE L1 -650 7158 7000 183 80 0 0 chrX 27832365 27832390 -134767540 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 2733 232 75 33 chrX 27832390 27833050 -134766880 - L1MC4a LINE L1 -808 7000 6296 317 286 0 0 chrX 27833050 27833120 -134766810 - MER63 DNA MER1_type -276 784 715 1022 277 128 45 chrX 27833166 27833870 -134766060 + L2 LINE L2 2528 3313 0 277 294 73 0 chrX 27834203 27834271 -134765659 - MER91A DNA MER1_type -5 191 119 2599 55 0 0 chrX 27834681 27834989 -134764941 - AluY SINE Alu -3 308 1 281 387 67 35 chrX 27835090 27835472 -134764458 + L2 LINE L2 1931 2299 -1015 2617 260 40 19 chrX 27835472 27836121 -134763809 - MLT2F LTR ERVL 0 663 1 281 387 67 35 chrX 27836121 27836515 -134763415 + L2 LINE L2 2299 2732 -582 288 196 52 102 chrX 27836862 27837042 -134762888 + MLT1F LTR MaLR 414 540 -2 249 174 43 0 chrX 27837172 27837218 -134762712 - MIR SINE MIR -157 105 58 1048 212 104 0 chrX 27837413 27837644 -134762286 - MIR SINE MIR 0 262 8 267 398 34 0 chrX 27837746 27837864 -134762066 + L2 LINE L2 3138 3259 -13 522 292 8 8 chrX 27839686 27839816 -134760114 + MER115 DNA AcHobo 8 137 -556 413 172 0 0 chrX 27839889 27839953 -134759977 + MER45B DNA AcHobo 1 64 -976 919 214 31 45 chrX 27839956 27840180 -134759750 - MER45B DNA AcHobo -735 305 85 199 330 45 0 chrX 27840333 27840421 -134759509 + MIR SINE MIR 97 188 -74 1934 74 3 130 chrX 27841158 27841506 -134758424 + AluSp SINE Alu 1 307 0 369 198 159 8 chrX 27841506 27841632 -134758298 - MER5C DNA MER1_type -53 271 127 1821 168 10 0 chrX 27841855 27842158 -134757772 - AluJo SINE Alu -6 306 1 2254 107 0 0 chrX 27843451 27843751 -134756179 - AluSg SINE Alu -10 300 1 27 62 0 0 chrX 27844423 27844471 -134755459 + AT_rich Low_complexity Low_complexity 1 48 0 415 216 54 18 chrX 27844689 27844800 -134755130 - MER5C DNA MER1_type -200 124 10 289 323 127 25 chrX 27844795 27844953 -134754977 + MIR SINE MIR 18 191 -71 * 338 269 0 11 chrX 27844964 27845057 -134754873 - L2 LINE L2 0 3313 3222 443 246 45 0 chrX 27845738 27845848 -134754082 - MER5C DNA MER1_type -200 124 10 312 319 121 13 chrX 27845843 27846000 -134753930 + MIR SINE MIR 18 191 -71 * 489 297 31 5 chrX 27846011 27846203 -134753727 - L2 LINE L2 0 3313 3117 183 162 0 0 chrX 27846463 27846500 -134753430 + (CA)n Simple_repeat Simple_repeat 1 37 0 2290 90 7 3 chrX 27846906 27847206 -134752724 - AluSg SINE Alu -9 301 1 3179 85 17 7 chrX 27848954 27849376 -134750554 - L1PA14 LINE L1 -3 6158 5733 5123 77 67 17 chrX 27850394 27850944 -134748986 - L1PA14 LINE L1 -3 6158 5564 2474 60 7 7 chrX 27850944 27851246 -134748684 - AluY SINE Alu -9 302 1 5123 77 67 17 chrX 27851246 27851396 -134748534 - L1PA14 LINE L1 -597 5564 5423 1783 176 21 21 chrX 27853020 27853360 -134746570 + MER58B DNA MER1_type 1 340 -1 410 200 27 27 chrX 27854643 27854753 -134745177 + MLT1H LTR MaLR 5 114 -435 1966 127 8 0 chrX 27855041 27855309 -134744621 + AluSx SINE Alu 27 296 -16 698 279 74 13 chrX 27855366 27855595 -134744335 + L2 LINE L2 2728 2970 -344 298 143 0 43 chrX 27855606 27855676 -134744254 + (TTCCC)n Simple_repeat Simple_repeat 5 71 0 1085 177 91 8 chrX 27855687 27855930 -134744000 - L1MA7 LINE L1 -1 6290 6028 2075 130 10 0 chrX 27855934 27856242 -134743688 - AluSp SINE Alu 0 313 3 273 279 0 15 chrX 27856289 27856357 -134743573 - MER5B DNA MER1_type -111 67 1 1502 145 54 8 chrX 27856452 27856694 -134743236 - AluJo SINE Alu -59 253 1 914 222 52 12 chrX 27857949 27858197 -134741733 + L1ME3A LINE L1 5904 6161 -9 477 257 9 0 chrX 27859047 27859152 -134740778 + MER5A DNA MER1_type 4 109 -80 1088 184 114 26 chrX 27859153 27859491 -134740439 - MSTD LTR MaLR 0 396 1 3364 205 104 42 chrX 27859491 27860261 -134739669 - MSTD-int LTR MaLR 0 1735 918 2458 197 38 87 chrX 27860282 27860444 -134739486 - MSTD-int LTR MaLR -1056 679 511 2308 101 7 0 chrX 27860444 27860751 -134739179 + AluSc SINE Alu 1 309 0 2458 197 38 87 chrX 27860751 27861300 -134738630 - MSTD-int LTR MaLR -1224 511 3 848 225 162 45 chrX 27861300 27861583 -134738347 - MLT1A2 LTR MaLR -2 372 43 1641 73 13 60 chrX 27861583 27861765 -134738165 - AluSg/x SINE Alu -3 309 139 2368 40 0 40 chrX 27861765 27862069 -134737861 - AluY SINE Alu -19 292 1 1641 73 13 60 chrX 27862069 27862118 -134737812 - AluSg/x SINE Alu -173 139 89 848 225 162 45 chrX 27862118 27862167 -134737763 - MLT1A2 LTR MaLR -331 43 1 203 263 35 18 chrX 27862167 27862224 -134737706 + MER5A DNA MER1_type 129 186 -3 1655 251 95 4 chrX 27863252 27863747 -134736183 - L1ME3A LINE L1 -9 6161 5622 2051 134 3 16 chrX 27865208 27865514 -134734416 + AluJo SINE Alu 1 302 -10 721 183 24 0 chrX 27865681 27865845 -134734085 + L1ME2 LINE L1 5652 5819 -345 542 172 19 1 chrX 27865849 27865963 -134733967 + MER61B LTR ERV1 7 797 -318 1743 173 3 10 chrX 27865975 27866287 -134733643 + MER61B LTR ERV1 102 411 -14 1080 200 65 56 chrX 27866291 27866631 -134733299 + L1ME2 LINE L1 5811 6153 -11 2481 48 6 21 chrX 27867031 27867132 -134732798 - MER51B LTR ERV1 0 377 276 1285 55 12 0 chrX 27867132 27867296 -134732634 - L1PA7 LINE L1 -3 6151 5986 2481 48 6 21 chrX 27867296 27867529 -134732401 - MER51B LTR ERV1 -101 276 48 248 109 236 18 chrX 27867518 27867573 -134732357 - MER51A LTR ERV1 -545 89 23 * 297 219 82 0 chrX 27867574 27867647 -134732283 + LTR16C LTR ERVL 411 489 -2 189 0 0 0 chrX 27867873 27867894 -134732036 + (CA)n Simple_repeat Simple_repeat 1 21 0 2882 168 74 33 chrX 27867962 27868595 -134731335 + L1MB7 LINE L1 5517 6175 -9 296 292 177 9 chrX 27868773 27868886 -134731044 - L2 LINE L2 -1 3271 3140 1484 184 39 33 chrX 27869122 27869481 -134730449 + MER74A LTR ERVL 1 361 -197 2340 67 3 7 chrX 27869495 27869793 -134730137 + AluY SINE Alu 1 297 -14 1361 111 0 11 chrX 27869794 27869983 -134729947 + AluSg/x SINE Alu 126 312 0 752 158 103 18 chrX 27870010 27870175 -134729755 + MER74A LTR ERVL 380 558 0 3759 110 77 5 chrX 27870869 27871470 -134728460 - LTR9B LTR ERV1 0 644 1 243 207 60 95 chrX 27871944 27872060 -134727870 - MIR SINE MIR -66 196 85 791 264 133 42 chrX 27872170 27872598 -134727332 - MLT1H LTR MaLR -4 545 79 4784 104 18 3 chrX 27872723 27873404 -134726526 - LTR8 LTR ERV1 0 691 1 185 266 55 73 chrX 27873652 27873761 -134726169 + MIR SINE MIR 18 124 -84 354 263 195 5 chrX 27875042 27875226 -134724704 + Charlie7 DNA MER1_type 83 305 -2307 556 269 66 22 chrX 27875226 27875477 -134724453 + MLT1H1 LTR MaLR 1 311 -284 542 259 46 51 chrX 27875499 27875684 -134724246 + MLT1G LTR MaLR 418 582 -8 1333 215 84 23 chrX 27875692 27876120 -134723810 + Charlie7 DNA MER1_type 307 760 -1852 310 308 106 0 chrX 27876330 27876434 -134723496 - L1ME3 LINE L1 -79 6083 5969 1140 298 78 3 chrX 27876513 27877086 -134722844 - L1ME3 LINE L1 -211 5959 5344 901 321 42 10 chrX 27877083 27877388 -134722542 - L1ME3 LINE L1 -1350 4796 4502 * 351 0 0 0 chrX 27877388 27877427 -134722503 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 901 321 42 10 chrX 27877427 27877791 -134722139 - L1ME3 LINE L1 -1644 4502 4106 738 261 106 21 chrX 27877800 27878084 -134721846 - MLT1I LTR MaLR -17 392 85 2685 35 3 0 chrX 27878755 27879065 -134720865 - AluY SINE Alu 0 311 1 181 256 190 50 chrX 27879709 27879830 -134720100 + L2 LINE L2 3171 3308 -5 201 74 0 0 chrX 27879992 27880019 -134719911 + (TG)n Simple_repeat Simple_repeat 1 27 0 336 250 141 78 chrX 27880138 27880203 -134719727 - MIR SINE MIR -27 235 175 622 212 118 18 chrX 27880203 27880373 -134719557 - MER5A DNA MER1_type -1 188 2 336 250 141 78 chrX 27880373 27880499 -134719431 - MIR SINE MIR -86 176 32 221 231 91 91 chrX 27881088 27881209 -134718721 - MIR SINE MIR -70 192 72 206 233 0 0 chrX 27881195 27881238 -134718692 + L2 LINE L2 3270 3312 -1 * 190 275 46 107 chrX 27881402 27881533 -134718397 - MIR SINE MIR -14 248 126 341 186 226 16 chrX 27881533 27881657 -134718273 + L1MC4 LINE L1 7524 7673 -369 359 41 20 0 chrX 27881673 27881722 -134718208 + (TCC)n Simple_repeat Simple_repeat 2 51 0 515 261 0 6 chrX 27881722 27881883 -134718047 + L1MC4 LINE L1 7679 7838 -204 1284 128 182 8 chrX 27881885 27882143 -134717787 + MSTD LTR MaLR 1 303 -93 659 254 32 119 chrX 27882146 27882556 -134717374 - L2 LINE L2 -725 2589 2216 336 267 86 0 chrX 27882830 27882935 -134716995 - MIR SINE MIR -70 192 79 1200 226 58 58 chrX 27882938 27883384 -134716546 - LTR16A1 LTR ERVL -11 446 1 192 77 0 0 chrX 27884728 27884754 -134715176 + (T)n Simple_repeat Simple_repeat 1 26 0 237 65 0 0 chrX 27884781 27884812 -134715118 + (TC)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chrX 27885440 27885460 -134714470 + (T)n Simple_repeat Simple_repeat 1 20 0 307 192 27 0 chrX 27885776 27885849 -134714081 - MER116 DNA Mariner 0 80 6 2353 99 33 28 chrX 27885868 27886230 -134713700 - THE1B LTR MaLR 0 364 1 1815 322 103 39 chrX 27886545 27888270 -134711660 + L2 LINE L2 391 2224 -1090 808 251 80 89 chrX 27889825 27890375 -134709555 - MLT1H LTR MaLR -4 545 1 303 262 139 8 chrX 27890393 27890515 -134709415 - MIR SINE MIR -51 211 74 446 276 59 20 chrX 27890692 27890844 -134709086 - MER5A DNA MER1_type -31 158 1 379 339 76 0 chrX 27890927 27891098 -134708832 + MIR SINE MIR 59 242 -20 297 0 0 0 chrX 27891828 27891861 -134708069 + (TG)n Simple_repeat Simple_repeat 2 34 0 219 245 0 0 chrX 27892403 27892452 -134707478 - MIR3 SINE MIR -6 202 154 2044 127 23 7 chrX 27892604 27892911 -134707019 - AluSx SINE Alu 0 312 1 443 309 13 20 chrX 27893132 27893281 -134706649 + MER5A DNA MER1_type 38 185 -4 579 320 22 14 chrX 27893435 27893657 -134706273 + MIR SINE MIR 27 250 -12 4603 191 27 33 chrX 27893711 27894971 -134704959 + L1MD2 LINE L1 5096 6349 -10 4825 125 83 30 chrX 27895140 27895482 -134704448 - MER4D LTR ERV1 0 903 580 2302 101 0 3 chrX 27895482 27895788 -134704142 + AluSg SINE Alu 1 305 -5 4825 125 83 30 chrX 27895788 27896303 -134703627 - MER4D LTR ERV1 -323 580 1 816 151 8 0 chrX 27896441 27896560 -134703370 + FLAM_C SINE Alu 1 120 -23 2166 118 24 0 chrX 27897324 27897621 -134702309 + AluSx SINE Alu 1 304 -8 521 291 42 140 chrX 27897675 27898060 -134701870 + L2 LINE L2 2921 3267 -5 780 249 0 31 chrX 27898110 27898303 -134701627 - MIR SINE MIR -2 260 74 2509 64 0 0 chrX 27898325 27898623 -134701307 - AluY SINE Alu -9 302 5 207 292 0 42 chrX 27899925 27899997 -134699933 + MIR3 SINE MIR 7 75 -133 207 206 123 27 chrX 27900009 27900082 -134699848 + MIR SINE MIR 127 206 -56 605 301 179 40 chrX 27900408 27900856 -134699074 - L3 LINE CR1 -17 1560 1051 641 253 184 0 chrX 27901207 27901397 -134698533 - MIR SINE MIR -15 247 23 236 341 45 30 chrX 27902943 27903075 -134696855 + L2 LINE L2 2625 2758 -556 266 365 185 18 chrX 27903940 27904335 -134695595 + L2 LINE L2 2812 3272 0 2376 79 0 3 chrX 27905299 27905591 -134694339 + AluSq SINE Alu 6 296 -17 804 287 97 10 chrX 27906165 27906465 -134693465 - L2 LINE L2 0 3313 2988 244 220 34 0 chrX 27906480 27906539 -134693391 + MLT1H LTR MaLR 1 61 -488 215 81 54 0 chrX 27906646 27906683 -134693247 + CT-rich Low_complexity Low_complexity 2 40 0 269 241 13 51 chrX 27906683 27906762 -134693168 + MLT1H LTR MaLR 223 298 -251 510 302 0 0 chrX 27906798 27906927 -134693003 - MER58A DNA MER1_type 0 134 6 293 253 21 21 chrX 27906979 27907074 -134692856 + MLT1H LTR MaLR 454 548 -1 1212 309 130 4 chrX 27907077 27907607 -134692323 - L2 LINE L2 -348 2966 2370 236 186 17 0 chrX 27907733 27907792 -134692138 + (TATG)n Simple_repeat Simple_repeat 2 61 0 274 267 0 0 chrX 27907857 27907962 -134691968 - HAL1 LINE L1 -133 2374 2270 21 0 0 0 chrX 27907987 27908008 -134691922 + AT_rich Low_complexity Low_complexity 1 21 0 378 190 72 5 chrX 27908009 27908183 -134691747 - L1MA9 LINE L1 -22 6290 6008 580 215 73 40 chrX 27908190 27908367 -134691563 - L2 LINE L2 -976 2338 2156 2465 166 25 48 chrX 27908368 27908797 -134691133 + L1MA8 LINE L1 5741 6156 -135 3410 37 0 0 chrX 27908797 27909206 -134690724 + L1PA4 LINE L1 5747 6155 0 2465 166 25 48 chrX 27909206 27909335 -134690595 + L1MA8 LINE L1 6156 6286 -5 2172 125 3 3 chrX 27909349 27909653 -134690277 + AluSx SINE Alu 1 304 -8 494 269 6 44 chrX 27909660 27909820 -134690110 - L2 LINE L2 -1170 2144 1991 1067 140 6 17 chrX 27909820 27909998 -134689932 + AluJb SINE Alu 137 312 0 1262 252 33 92 chrX 27910003 27910673 -134689257 - L2 LINE L2 -1360 1954 1325 287 235 49 12 chrX 27910983 27911064 -134688866 + MLT1H LTR MaLR 421 504 -45 1343 174 46 0 chrX 27911070 27911289 -134688641 - MER46A DNA MER2_type -7 229 1 2925 210 52 165 chrX 27911345 27912806 -134687124 - L2 LINE L2 -2006 1308 13 2526 69 0 7 chrX 27915478 27915784 -134684146 + AluSq SINE Alu 1 304 -9 498 277 39 0 chrX 27916702 27916857 -134683073 - Charlie8 DNA MER1_type -2148 269 109 433 288 0 0 chrX 27916870 27917002 -134682928 + L1 LINE L1 2736 2867 -3279 * 2200 129 44 12 chrX 27916996 27917406 -134682524 + L1MA6 LINE L1 4285 4707 -1439 5239 140 38 11 chrX 27917463 27918340 -134681590 + L1MA6 LINE L1 5401 6300 0 3173 187 117 94 chrX 27918362 27918741 -134681189 + L1MC3 LINE L1 6716 7085 -700 259 235 59 35 chrX 27918741 27918826 -134681104 + MLT1J LTR MaLR 35 121 -446 3173 187 117 94 chrX 27918826 27919408 -134680522 + L1MC3 LINE L1 7085 7785 0 437 296 11 0 chrX 27919632 27919808 -134680122 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 527 256 18 0 chrX 27919808 27920044 -134679886 + (CATA)n Simple_repeat Simple_repeat 1 240 0 435 294 0 0 chrX 27920087 27920250 -134679680 + (CATATA)n Simple_repeat Simple_repeat 4 166 0 227 264 111 0 chrX 27920254 27920326 -134679604 - L1MC4 LINE L1 -1347 6695 6616 235 339 0 0 chrX 27920327 27920386 -134679544 + (CA)n Simple_repeat Simple_repeat 1 59 0 229 209 0 0 chrX 27920386 27920429 -134679501 - L1MC4 LINE L1 -1347 6695 6653 * 254 272 0 22 chrX 27920424 27920516 -134679414 + L1MC4 LINE L1 6614 6703 -1339 241 245 0 82 chrX 27920442 27920540 -134679390 - L1MC4 LINE L1 -1339 6703 6614 * 232 275 0 0 chrX 27920517 27920586 -134679344 + L1MC4 LINE L1 6619 6687 -1355 * 264 231 123 0 chrX 27920587 27920652 -134679278 + MLT1J LTR MaLR 239 311 -200 1644 210 52 19 chrX 27920695 27921118 -134678812 - HsTC2 DNA Tc2 0 1898 1286 402 134 49 61 chrX 27921149 27921231 -134678699 - HsTC2 DNA Tc2 -1816 82 2 244 272 40 48 chrX 27921241 27921366 -134678564 + MLT1J LTR MaLR 381 504 -7 188 375 45 0 chrX 27923421 27923509 -134676421 + MIR3 SINE MIR 1 92 -116 195 42 0 0 chrX 27923949 27923973 -134675957 + (CACCC)n Simple_repeat Simple_repeat 5 28 0 327 301 145 64 chrX 27924756 27925115 -134674815 - L1M2 LINE L1 -5607 1242 855 4160 189 61 29 chrX 27925162 27925182 -134674748 - L1MB7 LINE L1 0 6184 6166 2033 107 3 17 chrX 27925182 27925482 -134674448 + AluSg SINE Alu 1 296 -14 4160 189 61 29 chrX 27925482 27927080 -134672850 - L1MB7 LINE L1 -18 6166 4492 203 180 80 20 chrX 27927105 27927155 -134672775 - MER5A DNA MER1_type -96 93 41 1494 169 98 14 chrX 27927405 27927761 -134672169 + LTR37A LTR ERV1 41 426 0 817 294 0 31 chrX 27928799 27929027 -134670903 + LTR33 LTR ERVL 1 221 -300 1913 87 3 66 chrX 27929343 27929632 -134670298 - AluY SINE Alu -9 302 32 290 185 43 98 chrX 27930154 27930246 -134669684 - MLT1I LTR MaLR 0 409 323 45271 40 1 0 chrX 27930246 27936392 -134663538 - L1PA4 LINE L1 -3 6152 1 4086 147 28 6 chrX 27936788 27937435 -134662495 + L1PA16 LINE L1 5506 6166 0 254 268 41 62 chrX 27938050 27938147 -134661783 - L2 LINE L2 -10 3262 3168 495 236 205 92 chrX 27938195 27938682 -134661248 + MLT1G1 LTR MaLR 1 542 0 552 305 107 38 chrX 27939010 27939485 -134660445 - L2 LINE L2 -575 2739 2232 471 198 12 0 chrX 27940683 27940769 -134659161 + MER96 DNA MER1_type? 1 87 -88 815 266 86 33 chrX 27940769 27941073 -134658857 - MLT1I LTR MaLR -83 326 7 3444 139 45 37 chrX 27941166 27941640 -134658290 + MER6A DNA MER2_type 4 473 -392 2016 127 31 0 chrX 27941640 27941931 -134657999 - AluSx SINE Alu -12 300 1 2578 51 0 0 chrX 27941936 27942232 -134657698 - AluY SINE Alu -15 296 1 3444 139 45 37 chrX 27942232 27942348 -134657582 + MER6A DNA MER2_type 476 605 0 2445 186 92 29 chrX 27943609 27943755 -134656175 + L1ME2 LINE L1 5542 5677 -487 1870 154 3 3 chrX 27943755 27944053 -134655877 + AluSx SINE Alu 1 298 -14 2445 186 92 29 chrX 27944053 27944492 -134655438 + L1ME2 LINE L1 5677 6164 0 757 251 182 61 chrX 27945474 27945820 -134654110 + MLT1G1 LTR MaLR 208 595 0 237 256 134 0 chrX 27945890 27945972 -134653958 + MER117 DNA MER1_type 27 119 -78 856 311 25 43 chrX 27945973 27946366 -134653564 + L2 LINE L2 2654 3057 -256 326 220 77 59 chrX 27946371 27946499 -134653431 - MLT1H LTR MaLR -3 546 274 2908 187 94 70 chrX 27946602 27947408 -134652522 - LTR1B LTR ERV1 0 826 1 370 293 88 60 chrX 27947486 27947735 -134652195 + L2 LINE L2 3054 3309 -4 590 275 92 112 chrX 27947899 27948364 -134651566 - LTR16C LTR ERVL -9 482 27 2013 229 25 25 chrX 27948400 27948492 -134651438 - L1ME1 LINE L1 -4 6162 6071 2271 91 14 0 chrX 27948492 27948788 -134651142 + AluSx SINE Alu 1 300 -12 2013 229 25 25 chrX 27948788 27949210 -134650720 - L1ME1 LINE L1 -94 6072 5648 667 195 8 8 chrX 27949218 27949341 -134650589 - MER63 DNA MER1_type -86 750 2 347 202 22 34 chrX 27949349 27949438 -134650492 - L1ME1 LINE L1 -479 5642 5555 3647 122 19 12 chrX 27949468 27950035 -134649895 + L1PA16 LINE L1 5455 6025 -141 2193 196 97 135 chrX 27950099 27951057 -134648873 - LTR28 LTR ERV1 0 1020 2 328 245 128 31 chrX 27951416 27951576 -134648354 - L1ME LINE L1 -340 5822 5634 208 245 198 19 chrX 27951747 27951853 -134648077 + L2 LINE L2 3179 3303 -10 1102 292 62 21 chrX 27952190 27952608 -134647322 - LTR16A LTR ERVL 0 450 16 1971 154 3 3 chrX 27953880 27954186 -134645744 + AluJb SINE Alu 1 306 -6 1660 164 23 17 chrX 27954190 27954489 -134645441 + AluJb SINE Alu 5 305 -7 805 245 34 27 chrX 27954597 27954678 -134645252 - LTR67 LTR ERVL 0 557 478 4091 158 80 9 chrX 27954678 27955362 -134644568 + MER44D DNA MER2_type 1 605 0 805 245 34 27 chrX 27955362 27955640 -134644290 - LTR67 LTR ERVL -79 478 154 213 39 0 0 chrX 27955729 27955755 -134644175 + (GA)n Simple_repeat Simple_repeat 1 26 0 304 282 68 39 chrX 27956019 27956225 -134643705 + L1ME LINE L1 5257 5468 -2340 411 294 56 17 chrX 27956872 27957052 -134642878 + L1ME LINE L1 5559 5745 -376 780 157 39 20 chrX 27957153 27957306 -134642624 + L1MA10 LINE L1 6176 6331 -3 397 241 56 138 chrX 27957351 27957422 -134642508 - MIR SINE MIR -15 247 172 1636 173 4 0 chrX 27957422 27957693 -134642237 - AluJb SINE Alu -39 273 2 397 241 56 138 chrX 27957693 27957816 -134642114 - MIR SINE MIR -90 172 69 872 223 4 101 chrX 27957824 27957900 -134642030 + MER58A DNA MER1_type 2 84 -2336 1913 142 0 0 chrX 27957900 27958182 -134641748 + AluJb SINE Alu 19 300 -12 872 223 4 101 chrX 27958182 27958290 -134641640 + MER58A DNA MER1_type 84 159 -2261 2088 174 30 67 chrX 27958290 27958720 -134641210 + MLT2D LTR ERVL 1 414 0 872 223 4 101 chrX 27958720 27958781 -134641149 + MER58A DNA MER1_type 159 224 0 260 358 0 0 chrX 27958785 27958852 -134641078 - MIR SINE MIR -194 68 2 231 245 0 0 chrX 27958854 27958903 -134641027 + L1ME LINE L1 5776 5824 -297 2281 149 69 27 chrX 27958915 27959323 -134640607 + MSTC LTR MaLR 4 428 0 5853 184 94 95 chrX 27959323 27959472 -134640458 + MSTB2-int LTR MaLR 1 149 -1502 1884 134 123 26 chrX 27959472 27959814 -134640116 - THE1C LTR MaLR 0 375 1 5853 184 94 95 chrX 27959814 27961317 -134638613 + MSTB2-int LTR MaLR 149 1651 0 2979 142 34 2 chrX 27961317 27961760 -134638170 + MSTB2 LTR MaLR 1 457 0 443 223 49 18 chrX 27961861 27961998 -134637932 + L1ME4a LINE L1 1197 6097 -14 274 330 121 49 chrX 27962154 27962378 -134637552 + L2 LINE L2 2644 2883 -431 555 199 55 20 chrX 27962760 27962906 -134637024 + MLT1J2 LTR MaLR 9 159 -291 357 211 0 12 chrX 27963002 27963103 -134636827 + MLT1I LTR MaLR 324 404 -5 213 330 122 78 chrX 27963897 27964127 -134635803 + L2 LINE L2 3029 3268 -4 2543 80 0 0 chrX 27964539 27964851 -134635079 + AluSx SINE Alu 1 312 0 520 343 136 27 chrX 27964946 27965284 -134634646 - L3b LINE CR1 -96 1487 1113 2977 272 34 22 chrX 27965424 27966598 -134633332 - L2 LINE L2 -25 3288 2102 560 158 8 75 chrX 27966775 27966895 -134633035 + FLAM_A SINE Alu 8 119 -23 1011 120 27 6 chrX 27966921 27967104 -134632826 + L1MA4A LINE L1 6104 6290 -13 21 0 0 0 chrX 27967104 27967125 -134632805 + AT_rich Low_complexity Low_complexity 1 21 0 824 270 45 65 chrX 27967276 27967694 -134632236 - LTR16A LTR ERVL 0 450 48 2635 187 42 40 chrX 27969376 27970083 -134629847 + L1MC4 LINE L1 7332 8040 -2 685 253 20 81 chrX 27971522 27971964 -134627966 + L1MC4a LINE L1 5597 6011 -1797 23 0 0 0 chrX 27972941 27972964 -134626966 + AT_rich Low_complexity Low_complexity 1 23 0 222 118 0 0 chrX 27973795 27973829 -134626101 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 279 54 0 0 chrX 27974355 27974392 -134625538 + (TG)n Simple_repeat Simple_repeat 2 38 0 278 212 0 24 chrX 27975305 27975390 -134624540 + (CCA)n Simple_repeat Simple_repeat 3 85 0 1018 209 76 4 chrX 27978861 27979086 -134620844 + MIR SINE MIR 17 257 -5 219 88 0 0 chrX 27979732 27979766 -134620164 + (A)n Simple_repeat Simple_repeat 1 34 0 221 207 0 17 chrX 27980765 27980823 -134619107 + CT-rich Low_complexity Low_complexity 4 60 0 268 386 7 39 chrX 27981123 27981276 -134618654 + L2 LINE L2 3121 3268 -4 986 175 22 79 chrX 27982415 27982643 -134617287 - MER58A DNA MER1_type 0 224 10 197 343 14 14 chrX 27983632 27983705 -134616225 + MIR SINE MIR 75 147 -61 369 252 79 0 chrX 27984185 27984324 -134615606 - MER112 DNA MER1_type -41 219 70 231 307 132 9 chrX 27985543 27985657 -134614273 + L2 LINE L2 3125 3252 -20 284 273 80 9 chrX 27986614 27986724 -134613206 + MIR SINE MIR 38 153 -67 2513 77 0 0 chrX 27987350 27987649 -134612281 - AluSg SINE Alu -11 299 1 882 112 7 13 chrX 27987680 27987832 -134612098 + L1MA4A LINE L1 6148 6298 -5 828 142 0 22 chrX 27987834 27987968 -134611962 + FLAM_C SINE Alu 1 131 -2 185 94 31 0 chrX 27989180 27989212 -134610718 + CT-rich Low_complexity Low_complexity 1 33 0 2336 98 0 3 chrX 27989940 27990245 -134609685 - AluY SINE Alu -5 306 3 955 285 60 87 chrX 27990475 27990956 -134608974 - L2 LINE L2 0 3313 2846 253 163 0 0 chrX 27991246 27991289 -134608641 + MLT1H LTR MaLR 507 549 0 1768 130 81 68 chrX 27991368 27991553 -134608377 - THE1C LTR MaLR 0 375 194 576 0 0 0 chrX 27991553 27991617 -134608313 + (GA)n Simple_repeat Simple_repeat 1 64 0 1768 130 81 68 chrX 27991617 27991801 -134608129 - THE1C LTR MaLR -181 194 1 4413 100 10 22 chrX 27992088 27992403 -134607527 + L1PB1 LINE L1 5487 5804 -347 306 0 0 0 chrX 27992403 27992437 -134607493 + (CA)n Simple_repeat Simple_repeat 2 35 0 4413 100 10 22 chrX 27992437 27992794 -134607136 + L1PB1 LINE L1 5804 6151 0 206 241 93 0 chrX 27993740 27993794 -134606136 - L2 LINE L2 -69 3244 3186 2121 107 7 10 chrX 27993837 27994165 -134605765 + AluSx SINE Alu 1 327 0 23 0 0 0 chrX 27994664 27994687 -134605243 + AT_rich Low_complexity Low_complexity 1 23 0 971 245 131 33 chrX 27994824 27995314 -134604616 + L1MC4 LINE L1 7417 7954 -88 23 33 0 0 chrX 27995557 27995587 -134604343 + AT_rich Low_complexity Low_complexity 1 30 0 182 204 20 20 chrX 27995712 27995761 -134604169 + L2 LINE L2 3167 3215 -98 1809 118 84 31 chrX 27996088 27996443 -134603487 + THE1C LTR MaLR 2 375 0 2262 101 0 0 chrX 27998591 27998889 -134601041 - AluSg SINE Alu -12 298 1 279 157 0 0 chrX 28000458 28000509 -134599421 + A-rich Low_complexity Low_complexity 1 51 0 530 296 63 57 chrX 28001180 28001690 -134598240 - L1ME3 LINE L1 -205 5948 5436 396 309 124 35 chrX 28001764 28002562 -134597368 - L1ME3 LINE L1 -813 5316 4448 * 637 265 118 35 chrX 28002559 28003158 -134596772 - L1ME3 LINE L1 -3044 3085 2437 244 239 24 42 chrX 28004680 28004776 -134595154 - L1ME3 LINE L1 -4909 1210 1128 396 302 90 40 chrX 28004801 28005079 -134594851 - L1ME3 LINE L1 -4985 1134 843 2072 97 68 0 chrX 28005114 28005393 -134594537 - AluSq SINE Alu -15 298 1 1903 156 0 20 chrX 28005468 28005769 -134594161 - AluJo SINE Alu -17 295 1 2368 74 10 7 chrX 28007213 28007523 -134592407 - AluY SINE Alu 0 311 1 1728 153 0 50 chrX 28008633 28008933 -134590997 + AluJb SINE Alu 7 291 -21 259 212 30 30 chrX 28009557 28009623 -134590307 + MIR SINE MIR 197 262 0 1952 131 33 36 chrX 28010729 28011034 -134588896 - AluJo SINE Alu -8 304 1 2034 150 20 43 chrX 28011064 28011504 -134588426 + L1MB8 LINE L1 5683 6112 -66 334 198 0 0 chrX 28011528 28011609 -134588321 + L1MB8 LINE L1 6098 6178 0 216 296 25 37 chrX 28012050 28012131 -134587799 - L2 LINE L2 -50 3222 3143 295 260 60 0 chrX 28013509 28013609 -134586321 + MER103 DNA DNA 9 114 -52 424 242 226 16 chrX 28013865 28014055 -134585875 + MIR SINE MIR 15 244 -18 354 394 101 24 chrX 28014862 28015159 -134584771 + L2 LINE L2 2945 3264 -8 198 0 0 0 chrX 28015286 28015308 -134584622 + (A)n Simple_repeat Simple_repeat 1 22 0 2045 132 13 3 chrX 28016063 28016381 -134583549 + THE1B LTR MaLR 1 321 -43 217 77 103 0 chrX 28019097 28019136 -134580794 - L2 LINE L2 0 3313 3271 400 321 101 24 chrX 28020082 28020315 -134579615 + MIR SINE MIR 10 260 -2 25 51 0 0 chrX 28023197 28023236 -134576694 + AT_rich Low_complexity Low_complexity 1 39 0 210 37 0 0 chrX 28025873 28025900 -134574030 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chrX 28029235 28029272 -134570658 + AT_rich Low_complexity Low_complexity 1 37 0 219 36 0 0 chrX 28030753 28030781 -134569149 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 349 301 135 6 chrX 28031838 28032001 -134567929 + MIR SINE MIR 8 191 -71 284 305 176 8 chrX 28032265 28032396 -134567534 - MER5A DNA MER1_type 0 189 37 594 128 0 0 chrX 28032466 28032560 -134567370 - LTR19B LTR ERV1 0 580 487 400 252 47 39 chrX 28032694 28032821 -134567109 + MIR SINE MIR 63 190 -72 345 141 13 115 chrX 28033064 28033142 -134566788 - L2 LINE L2 0 3313 3244 437 237 145 40 chrX 28036258 28036410 -134563520 - MIR3 SINE MIR -3 205 38 21 0 0 0 chrX 28036608 28036629 -134563301 + AT_rich Low_complexity Low_complexity 1 21 0 254 268 102 19 chrX 28036631 28036788 -134563142 - L1MCa LINE L1 -4581 1729 1560 2162 112 3 0 chrX 28036842 28037137 -134562793 - AluSx SINE Alu -16 296 1 6905 11 0 0 chrX 28037273 28038053 -134561877 + L1PA3 LINE L1 5373 6152 -3 280 264 28 31 chrX 28038089 28038270 -134561660 - L1MCa LINE L1 -4995 1315 937 318 284 73 60 chrX 28038404 28038636 -134561294 - L1MCa LINE L1 -5305 1005 771 248 344 19 19 chrX 28038769 28038926 -134561004 - L1MCa LINE L1 -5470 649 493 2978 101 5 5 chrX 28039156 28039594 -134560336 + L1PA13 LINE L1 5720 6157 -6 781 260 134 4 chrX 28039931 28040162 -134559768 + MIR SINE MIR 2 262 0 327 236 38 0 chrX 28040511 28040617 -134559313 - MER103 DNA DNA -8 158 49 639 0 0 0 chrX 28040646 28040717 -134559213 + (GA)n Simple_repeat Simple_repeat 2 72 0 1024 215 14 22 chrX 28040734 28040957 -134558973 + L3b LINE CR1 1227 1447 -136 767 244 32 65 chrX 28042214 28042460 -134557470 + MER8 DNA MER2_type 1 238 -1 261 271 0 0 chrX 28043010 28043069 -134556861 + MER20 DNA MER1_type 1 59 -160 654 141 16 130 chrX 28043490 28043675 -134556255 + MER20 DNA MER1_type 56 219 0 458 129 0 21 chrX 28043675 28043768 -134556162 - L1MD3 LINE L1 -96 7899 7809 240 35 0 0 chrX 28044096 28044125 -134555805 + (TG)n Simple_repeat Simple_repeat 2 30 0 2359 122 5 22 chrX 28044313 28044683 -134555247 + THE1B LTR MaLR 1 364 0 285 303 83 0 chrX 28045537 28045646 -134554284 - MIR3 SINE MIR -4 204 87 1348 260 69 49 chrX 28046337 28046810 -134553120 + L1MC4 LINE L1 7080 7575 -467 1800 109 11 21 chrX 28046810 28047095 -134552835 + AluSx SINE Alu 1 282 -30 1348 260 69 49 chrX 28047095 28047379 -134552551 + L1MC4 LINE L1 7575 7852 -190 351 204 111 0 chrX 28048501 28048609 -134551321 + L1ME1 LINE L1 5928 6047 -119 431 272 6 0 chrX 28048609 28048767 -134551163 + GA-rich Low_complexity Low_complexity 2 160 0 1458 92 11 0 chrX 28049458 28049642 -134550288 + AluSc SINE Alu 1 186 -123 1535 70 5 10 chrX 28049762 28049962 -134549968 + AluSc SINE Alu 111 309 0 680 270 167 14 chrX 28050154 28050376 -134549554 - MIR SINE MIR 0 262 7 374 164 0 0 chrX 28050423 28050484 -134549446 - FRAM/FAM SINE Alu -105 61 1 366 127 0 14 chrX 28050484 28050555 -134549375 + L1MA4 LINE L1 6103 6172 -128 2954 137 29 63 chrX 28050870 28051321 -134548609 + L1MA4 LINE L1 5674 6098 -202 874 227 0 0 chrX 28051321 28051484 -134548446 - FAM SINE Alu -12 163 1 2954 137 29 63 chrX 28051484 28051680 -134548250 + L1MA4 LINE L1 6098 6299 -1 635 201 0 101 chrX 28051734 28051893 -134548037 - Tigger3(Golem) DNA MER2_type -2886 143 1 253 253 93 0 chrX 28052160 28052235 -134547695 + MIR3 SINE MIR 101 182 -26 191 163 47 0 chrX 28053571 28053614 -134546316 + MIR SINE MIR 162 206 -56 1616 155 42 0 chrX 28054145 28054260 -134545670 + AluJo SINE Alu 1 110 -202 498 33 0 0 chrX 28054260 28054320 -134545610 + (CA)n Simple_repeat Simple_repeat 2 61 0 1616 155 42 0 chrX 28054320 28054488 -134545442 + AluJo SINE Alu 110 296 -16 1846 95 32 4 chrX 28055033 28055312 -134544618 + AluSx SINE Alu 22 307 0 314 290 72 36 chrX 28055963 28056101 -134543829 + L1ME LINE L1 5592 5734 -387 2294 97 3 3 chrX 28056101 28056411 -134543519 + AluSx SINE Alu 1 310 -2 2086 105 3 0 chrX 28057718 28058023 -134541907 - AluSx SINE Alu 0 306 1 248 266 44 71 chrX 28058107 28058220 -134541710 + L2 LINE L2 3162 3271 -1 22 0 0 0 chrX 28060368 28060390 -134539540 + AT_rich Low_complexity Low_complexity 1 22 0 2620 92 63 17 chrX 28060576 28060879 -134539051 + L1PA14 LINE L1 5725 6054 -107 820 70 94 8 chrX 28060879 28061007 -134538923 + MER85 DNA T2_type 1 139 0 2620 92 63 17 chrX 28061007 28061117 -134538813 + L1PA14 LINE L1 6054 6157 -4 194 0 39 0 chrX 28065242 28065268 -134534662 + (TA)n Simple_repeat Simple_repeat 1 27 0 333 47 0 0 chrX 28065268 28065311 -134534619 + (TG)n Simple_repeat Simple_repeat 2 44 0 219 258 328 0 chrX 28065739 28065867 -134534063 - MIR3 SINE MIR -3 205 36 2251 181 3 3 chrX 28067533 28067915 -134532015 - MER47B DNA MER2_type -36 382 1 2536 68 0 0 chrX 28068032 28068342 -134531588 - AluY SINE Alu -1 310 1 334 255 29 59 chrX 28071700 28071802 -134528128 - L2 LINE L2 0 3272 3174 630 339 76 22 chrX 28071882 28072384 -134527546 + L2 LINE L2 573 1101 -2213 604 160 21 0 chrX 28072834 28072928 -134527002 + MER8 DNA MER2_type 141 236 -3 219 114 0 0 chrX 28072933 28072968 -134526962 + (CA)n Simple_repeat Simple_repeat 2 36 0 2043 162 15 6 chrX 28072971 28073310 -134526620 + MER7A DNA MER2_type 7 346 0 540 316 212 31 chrX 28073318 28073904 -134526026 + L2 LINE L2 1711 2190 -1082 1319 97 101 42 chrX 28073904 28074121 -134525809 - MER30 DNA MER1_type 0 230 1 540 316 212 31 chrX 28074121 28074682 -134525248 + L2 LINE L2 2190 3101 -171 242 304 0 0 chrX 28074826 28074872 -134525058 + L2 LINE L2 3143 3188 -84 2048 74 78 0 chrX 28074874 28075144 -134524786 + AluSc SINE Alu 1 291 -18 267 283 174 0 chrX 28075311 28075403 -134524527 - MIR SINE MIR -71 137 30 2000 126 0 27 chrX 28076513 28076807 -134523123 - AluJb SINE Alu -26 286 1 285 247 90 0 chrX 28076810 28076899 -134523031 - L1M4 LINE L1 -1332 4814 4718 1758 169 7 17 chrX 28076900 28077202 -134522728 + AluJo SINE Alu 1 299 -13 2117 121 7 3 chrX 28077912 28078217 -134521713 - AluSq SINE Alu -7 306 1 22 80 0 0 chrX 28078665 28078715 -134521215 + AT_rich Low_complexity Low_complexity 1 50 0 279 0 0 0 chrX 28078882 28078913 -134521017 + (TG)n Simple_repeat Simple_repeat 1 31 0 268 258 45 34 chrX 28079226 28079315 -134520615 - MER102b DNA MER1_type 0 341 252 2147 118 0 7 chrX 28079803 28080108 -134519822 + AluSx SINE Alu 1 303 -9 655 196 6 24 chrX 28080464 28080632 -134519298 - L1P LINE L1 -1545 4601 4437 3486 76 2 2 chrX 28080633 28081112 -134518818 + L1PA2 LINE L1 5703 6181 0 22 0 0 0 chrX 28082604 28082626 -134517304 + AT_rich Low_complexity Low_complexity 1 22 0 2289 101 0 7 chrX 28083183 28083480 -134516450 + AluSg SINE Alu 1 295 -15 201 196 59 20 chrX 28084073 28084175 -134515755 + (TA)n Simple_repeat Simple_repeat 2 107 0 610 331 54 48 chrX 28084261 28084414 -134515516 - L2 LINE L2 -1 3312 3161 2147 96 3 14 chrX 28084414 28084707 -134515223 + AluSq SINE Alu 1 290 -23 610 331 54 48 chrX 28084707 28085085 -134514845 - L2 LINE L2 -152 3161 2776 668 252 100 107 chrX 28085092 28085663 -134514267 + HAL1 LINE L1 1 567 -1940 682 283 101 4 chrX 28086737 28086984 -134512946 + MER102b DNA MER1_type 55 325 -16 187 316 0 18 chrX 28087370 28087427 -134512503 - L2 LINE L2 -17 3255 3200 2309 128 105 18 chrX 28087552 28087998 -134511932 - MER31A LTR ERV1 0 485 1 200 189 189 40 chrX 28088342 28088416 -134511514 + L2 LINE L2 3224 3308 -5 390 296 45 45 chrX 28088950 28089173 -134510757 + MLT1J LTR MaLR 287 509 -2 2226 128 0 0 chrX 28090532 28090838 -134509092 - AluSx SINE Alu -6 306 1 184 276 166 21 chrX 28091368 28091513 -134508417 - MIR SINE MIR -72 190 25 355 341 6 57 chrX 28092189 28092365 -134507565 - MIR3 SINE MIR -33 175 9 202 267 67 0 chrX 28093610 28093670 -134506260 - MIR3 SINE MIR -42 166 103 328 288 28 73 chrX 28093722 28093899 -134506031 + MIR SINE MIR 86 254 -8 271 264 233 6 chrX 28094058 28094221 -134505709 + MIR SINE MIR 3 202 -60 2062 144 3 6 chrX 28094793 28095106 -134504824 + AluJb SINE Alu 1 312 0 315 0 0 0 chrX 28095519 28095554 -134504376 + (TG)n Simple_repeat Simple_repeat 2 36 0 566 308 127 28 chrX 28096360 28096714 -134503216 + L1ME LINE L1 5352 5740 -381 424 240 83 15 chrX 28097506 28097675 -134502255 + L1ME4a LINE L1 1162 6094 -5 244 196 0 0 chrX 28098204 28098255 -134501675 - L2 LINE L2 -1 3312 3262 11629 130 19 15 chrX 28098301 28099465 -134500465 + Tigger1 DNA MER2_type 1 1159 -1259 2403 87 0 0 chrX 28099465 28099763 -134500167 + AluSg SINE Alu 1 298 -12 11629 130 19 15 chrX 28099763 28100139 -134499791 + Tigger1 DNA MER2_type 1159 1552 -866 2368 90 0 3 chrX 28100139 28100440 -134499490 + AluSg SINE Alu 1 300 -10 11629 130 19 15 chrX 28100440 28100739 -134499191 + Tigger1 DNA MER2_type 1552 1848 -570 2848 104 29 2 chrX 28100729 28101141 -134498789 + Tigger1 DNA MER2_type 1996 2418 0 * 1465 209 135 52 chrX 28101440 28101923 -134498007 + LTR33A LTR ERVL 1 523 0 1808 105 12 23 chrX 28102073 28102330 -134497600 - AluSx SINE Alu -24 288 35 275 350 113 5 chrX 28102673 28102867 -134497063 - MIR SINE MIR 0 262 48 202 216 39 0 chrX 28103393 28103444 -134496486 + MER5C DNA MER1_type 72 124 -200 2304 98 0 10 chrX 28103621 28103928 -134496002 + AluSc SINE Alu 1 304 -5 229 292 44 9 chrX 28105054 28105167 -134494763 - L1ME4a LINE L1 -2 6119 6003 847 168 0 0 chrX 28105171 28105296 -134494634 + FLAM_C SINE Alu 1 125 -18 2834 195 59 29 chrX 28105989 28106646 -134493284 + L1ME2 LINE L1 5474 6150 -14 1250 136 5 21 chrX 28107115 28107306 -134492624 - MER5A DNA MER1_type 0 189 2 438 221 21 0 chrX 28107581 28107676 -134492254 + MER5A DNA MER1_type 10 106 -83 216 0 0 0 chrX 28113965 28113989 -134485941 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chrX 28114716 28114737 -134485193 + GC_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chrX 28114766 28114819 -134485111 + GC_rich Low_complexity Low_complexity 1 53 0 299 25 25 0 chrX 28114902 28114942 -134484988 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chrX 28115100 28115131 -134484799 + AT_rich Low_complexity Low_complexity 1 31 0 590 181 0 17 chrX 28115265 28115381 -134484549 + MER5A DNA MER1_type 1 114 -75 634 188 8 16 chrX 28115867 28115995 -134483935 - FLAM_A SINE Alu -6 127 1 183 80 0 0 chrX 28117153 28117178 -134482752 + (TTA)n Simple_repeat Simple_repeat 2 26 0 189 351 64 11 chrX 28117270 28117364 -134482566 - MIR SINE MIR -162 100 2 1176 272 97 39 chrX 28117617 28118103 -134481827 + LTR33 LTR ERVL 1 514 -7 511 331 120 36 chrX 28118396 28118757 -134481173 - L2 LINE L2 -455 2859 2431 763 210 72 6 chrX 28118757 28118924 -134481006 - MER5B DNA MER1_type 0 178 1 511 331 120 36 chrX 28118924 28119139 -134480791 - L2 LINE L2 -883 2431 2235 251 230 10 100 chrX 28121603 28121703 -134478227 + MIR SINE MIR 61 151 -111 180 302 40 63 chrX 28122741 28122867 -134477063 - L2 LINE L2 -95 3218 3096 387 0 0 0 chrX 28122957 28123000 -134476930 + (TG)n Simple_repeat Simple_repeat 2 44 0 2196 108 0 7 chrX 28123854 28124160 -134475770 - AluSx SINE Alu -8 304 1 2642 224 85 8 chrX 28124215 28124848 -134475082 + L1ME3A LINE L1 5451 6139 -31 1669 105 39 7 chrX 28124848 28125133 -134474797 - L1MA8 LINE L1 -1 6290 5997 2642 224 85 8 chrX 28125133 28125160 -134474770 + L1ME3A LINE L1 6139 6162 -8 591 198 10 109 chrX 28125542 28125664 -134474266 - MER112 DNA MER1_type -6 254 156 897 130 19 25 chrX 28125664 28125826 -134474104 + L1PA16 LINE L1 6006 6166 0 591 198 10 109 chrX 28125826 28125895 -134474035 - MER112 DNA MER1_type -104 156 82 548 157 41 54 chrX 28127173 28127320 -134472610 + MLT1H LTR MaLR 14 158 -391 353 275 85 59 chrX 28127359 28127595 -134472335 + MLT1H LTR MaLR 249 490 -59 664 204 142 6 chrX 28127628 28127790 -134472140 + MER58C DNA MER1_type 30 213 -2 278 140 18 18 chrX 28127791 28127848 -134472082 + MLT1H LTR MaLR 493 549 0 960 267 37 17 chrX 28128110 28128410 -134471520 + L1ME1 LINE L1 5856 6161 -5 25 0 0 0 chrX 28128411 28128436 -134471494 + AT_rich Low_complexity Low_complexity 1 25 0 566 304 84 22 chrX 28128572 28128799 -134471131 - L3 LINE CR1 -3 1574 1334 679 375 105 5 chrX 28128955 28129366 -134470564 - L3 LINE CR1 -940 637 186 2462 132 0 0 chrX 28131712 28132077 -134467853 - MER47A DNA MER2_type 0 366 2 462 36 0 0 chrX 28132359 28132415 -134467515 + (TTC)n Simple_repeat Simple_repeat 2 57 0 539 202 0 17 chrX 28132418 28132537 -134467393 - FLAM_C SINE Alu -26 117 1 408 55 0 0 chrX 28132627 28132682 -134467248 + (CA)n Simple_repeat Simple_repeat 2 56 0 558 237 199 26 chrX 28134358 28134514 -134465416 + MER5A DNA MER1_type 7 189 0 1744 136 13 52 chrX 28134555 28134865 -134465065 - AluSx SINE Alu -11 301 4 1813 125 93 0 chrX 28136804 28137084 -134462846 + AluSx SINE Alu 6 311 -1 2171 110 0 0 chrX 28137689 28138020 -134461910 - AluSx SINE Alu 0 333 3 24 32 0 0 chrX 28138022 28138053 -134461877 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chrX 28138585 28138608 -134461322 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 687 281 62 62 chrX 28138977 28139315 -134460615 + MER102b DNA MER1_type 4 341 0 583 247 174 7 chrX 28139381 28139668 -134460262 + L1ME3A LINE L1 3429 3763 -2383 2655 247 30 33 chrX 28139689 28140829 -134459101 + L1ME3A LINE L1 4914 6055 -115 264 236 173 0 chrX 28140837 28140947 -134458983 - L1MC4 LINE L1 0 8042 7914 543 24 12 24 chrX 28140965 28141048 -134458882 + (TG)n Simple_repeat Simple_repeat 2 83 0 272 303 23 15 chrX 28141059 28141191 -134458739 + L1ME3 LINE L1 6030 6162 0 874 119 0 73 chrX 28141675 28141826 -134458104 + FLAM_C SINE Alu 1 140 -3 247 288 8 80 chrX 28142039 28142164 -134457766 + MIR SINE MIR 107 222 -40 459 324 100 12 chrX 28142235 28142405 -134457525 + MIR3 SINE MIR 19 203 -5 2432 72 3 0 chrX 28142792 28143096 -134456834 - AluY SINE Alu -6 305 1 366 173 0 0 chrX 28143143 28143218 -134456712 - L1MB7 LINE L1 0 6184 6110 2080 108 24 3 chrX 28143219 28143515 -134456415 - AluSx SINE Alu -10 302 1 180 0 0 0 chrX 28143785 28143805 -134456125 + (T)n Simple_repeat Simple_repeat 1 20 0 272 324 186 20 chrX 28143815 28144019 -134455911 + L3b LINE CR1 1273 1510 -73 468 51 0 0 chrX 28145995 28146054 -134453876 + (CA)n Simple_repeat Simple_repeat 2 60 0 2416 92 0 0 chrX 28147100 28147403 -134452527 + AluSc SINE Alu 1 303 -6 249 233 198 9 chrX 28148265 28148381 -134451549 + L1ME4a LINE L1 5968 6105 -16 394 285 117 31 chrX 28148430 28148799 -134451131 + L1MCa LINE L1 60 228 -5817 2020 141 133 11 chrX 28148905 28149273 -134450657 - MSTA LTR MaLR -15 413 1 209 83 33 33 chrX 28149334 28149394 -134450536 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 1009 216 56 129 chrX 28149512 28150272 -134449658 + L1MCa LINE L1 569 1336 -4905 27 49 0 0 chrX 28150721 28150762 -134449168 + AT_rich Low_complexity Low_complexity 1 41 0 648 317 84 42 chrX 28150828 28151326 -134448604 + L2 LINE L2 2185 2703 -611 189 330 52 31 chrX 28151496 28151593 -134448337 + L2 LINE L2 3174 3272 0 40 0 0 0 chrX 28152205 28152245 -134447685 + AT_rich Low_complexity Low_complexity 1 40 0 433 302 83 6 chrX 28152371 28152540 -134447390 + L2 LINE L2 2170 2351 -963 1255 160 4 16 chrX 28152729 28152979 -134446951 - L1MA7 LINE L1 -1 6290 6044 236 256 22 22 chrX 28153005 28153095 -134446835 + L2 LINE L2 2435 2524 -790 22 56 0 0 chrX 28153831 28153867 -134446063 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chrX 28154576 28154604 -134445326 + AT_rich Low_complexity Low_complexity 1 28 0 1813 142 35 19 chrX 28155519 28155831 -134444099 - MER1B DNA MER1_type 0 339 2 198 0 0 0 chrX 28156230 28156252 -134443678 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 681 209 0 0 chrX 28156254 28156369 -134443561 - FLAM_C SINE Alu -18 115 1 2175 108 3 3 chrX 28156389 28156684 -134443246 - AluSx SINE Alu -15 297 3 26 30 0 0 chrX 28157000 28157033 -134442897 + AT_rich Low_complexity Low_complexity 1 33 0 261 0 0 0 chrX 28157834 28157863 -134442067 + (TC)n Simple_repeat Simple_repeat 1 29 0 228 140 0 35 chrX 28157864 28157921 -134442009 + L1MC4 LINE L1 6648 6702 -1340 1574 187 0 43 chrX 28158186 28158512 -134441418 - AluJb SINE Alu 0 312 1 2016 105 3 7 chrX 28159143 28159439 -134440491 - L1PA8A LINE L1 -1330 4816 4522 * 6722 77 4 0 chrX 28159438 28160723 -134439207 + L1PA8A LINE L1 4815 6104 -27 26 0 0 0 chrX 28160812 28160838 -134439092 + AT_rich Low_complexity Low_complexity 1 26 0 913 195 16 0 chrX 28161187 28161372 -134438558 - L1PB4 LINE L1 -2 6154 5967 2069 133 0 13 chrX 28161474 28161790 -134438140 - AluSx SINE Alu 0 312 1 238 274 83 36 chrX 28161823 28161907 -134438023 + MIR SINE MIR 169 256 -6 342 0 0 0 chrX 28162398 28162436 -134437494 + (GA)n Simple_repeat Simple_repeat 2 39 0 767 172 0 15 chrX 28164291 28164425 -134435505 + FLAM_A SINE Alu 1 132 -1 711 257 8 25 chrX 28164487 28164728 -134435202 - AluSc SINE Alu -11 298 62 1266 118 5 68 chrX 28165544 28165764 -134434166 + AluJo SINE Alu 86 291 -21 219 296 156 29 chrX 28166909 28167056 -134432874 + MIR SINE MIR 15 177 -56 21 0 0 0 chrX 28167303 28167324 -134432606 + AT_rich Low_complexity Low_complexity 1 21 0 225 291 0 0 chrX 28167348 28167403 -134432527 + L3 LINE CR1 1517 1571 -6 2245 141 36 58 chrX 28168485 28168727 -134431203 + MLT1C LTR MaLR 1 230 -237 2247 98 3 0 chrX 28168727 28169022 -134430908 + AluSx SINE Alu 1 296 -16 2245 141 36 58 chrX 28169022 28169227 -134430703 + MLT1C LTR MaLR 230 438 -29 1579 130 79 29 chrX 28169227 28169542 -134430388 + L1MB7 LINE L1 5838 6168 -16 2326 87 0 7 chrX 28169550 28169849 -134430081 + AluSq SINE Alu 3 299 -14 816 229 69 0 chrX 28169862 28170037 -134429893 + L2 LINE L2 2506 2692 -622 527 168 227 0 chrX 28170468 28170587 -134429343 - MER3 DNA MER1_type -63 146 1 720 192 56 0 chrX 28170645 28170770 -134429160 + FLAM_C SINE Alu 2 133 -10 2365 89 0 0 chrX 28222627 28222919 -134377011 - AluSx SINE Alu -20 292 1 548 342 71 43 chrX 28223243 28223705 -134376225 - L2 LINE L2 -583 2731 2257 4779 182 42 2 chrX 28223734 28223881 -134376049 + L1MD1 LINE L1 4897 5037 -1205 1708 71 0 0 chrX 28223881 28224093 -134375837 + AluY SINE Alu 91 302 -9 4779 182 42 2 chrX 28224093 28225209 -134374721 + L1MD1 LINE L1 5037 6214 -28 470 355 47 0 chrX 28225797 28226008 -134373922 + MIR SINE MIR 8 228 -34 197 344 125 10 chrX 28226070 28226166 -134373764 + L2 LINE L2 3139 3245 -27 12393 24 1 0 chrX 28226562 28228799 -134371131 + L1PA3 LINE L1 3914 6155 0 493 280 51 64 chrX 28228833 28229036 -134370894 + LTR16A LTR ERVL 1 205 -245 655 85 108 46 chrX 28229036 28229166 -134370764 - MER85 DNA T2_type -1 138 1 493 280 51 64 chrX 28229166 28229394 -134370536 + LTR16A LTR ERVL 205 428 -22 1788 134 22 9 chrX 28229531 28229851 -134370079 + L1MB2 LINE L1 5847 6170 -1 761 316 76 10 chrX 28231167 28231468 -134368462 + L3 LINE CR1 1253 1573 -4 791 253 41 0 chrX 28231521 28231691 -134368239 + MIR SINE MIR 2 178 -84 3468 58 4 9 chrX 28231691 28232141 -134367789 + LTR7 LTR ERV1 1 448 -2 5623 112 33 4 chrX 28232143 28233586 -134366344 + HERVH LTR ERV1 1 1730 -5983 6788 50 34 0 chrX 28233828 28235209 -134364721 + L1PA7 LINE L1 4727 6154 0 24 0 0 0 chrX 28236766 28236790 -134363140 + AT_rich Low_complexity Low_complexity 1 24 0 540 270 11 11 chrX 28237698 28237872 -134362058 - LTR16A1 LTR ERVL -2 455 282 2189 98 30 3 chrX 28237921 28238217 -134361713 - AluSq SINE Alu -9 304 1 609 259 93 5 chrX 28238251 28238444 -134361486 + MER63A DNA MER1_type 1 210 0 338 261 29 36 chrX 28238444 28238576 -134361354 - LTR16A1 LTR ERVL -276 181 51 783 210 57 0 chrX 28238948 28239124 -134360806 - MER5A DNA MER1_type 0 189 4 23 54 0 0 chrX 28239200 28239237 -134360693 + AT_rich Low_complexity Low_complexity 1 37 0 1883 161 0 0 chrX 28239532 28239817 -134360113 + AluJb SINE Alu 1 285 -27 1789 180 109 0 chrX 28240177 28240561 -134359369 - MSTB1 LTR MaLR 0 432 7 524 294 10 36 chrX 28240831 28241025 -134358905 + MIR SINE MIR 71 259 -3 262 246 43 0 chrX 28241073 28241142 -134358788 + MIR SINE MIR 72 143 -119 489 331 50 11 chrX 28242058 28242239 -134357691 + MIR3 SINE MIR 16 203 -5 2205 96 0 0 chrX 28242957 28243262 -134356668 + AluSx SINE Alu 3 307 0 293 306 43 24 chrX 28243812 28243958 -134355972 - MIR SINE MIR -44 164 15 2221 103 7 10 chrX 28244003 28244304 -134355626 + AluSx SINE Alu 1 300 -12 182 255 0 78 chrX 28245084 28245135 -134354795 - L2 LINE L2 -6 3307 3261 510 154 36 9 chrX 28245367 28245477 -134354453 - AluSg SINE Alu -197 113 1 197 213 75 100 chrX 28245998 28246078 -134353852 + MIR3 SINE MIR 15 92 -116 22 56 0 0 chrX 28246229 28246265 -134353665 + AT_rich Low_complexity Low_complexity 1 36 0 3489 131 21 4 chrX 28246267 28246809 -134353121 - L1PA16 LINE L1 -9 6157 5603 2417 99 0 6 chrX 28246809 28247123 -134352807 - AluSx SINE Alu 0 312 1 3489 131 21 4 chrX 28247123 28247138 -134352792 - L1PA16 LINE L1 -563 5603 5590 426 293 111 33 chrX 28247304 28247485 -134352445 - L2 LINE L2 0 3313 3119 504 0 0 0 chrX 28247783 28247839 -134352091 + (CA)n Simple_repeat Simple_repeat 1 56 0 310 305 62 31 chrX 28247928 28248056 -134351874 + L2 LINE L2 3139 3270 -2 953 261 19 19 chrX 28248364 28248621 -134351309 + MIR SINE MIR 4 260 -2 2297 72 23 7 chrX 28250067 28250372 -134349558 + AluY SINE Alu 1 310 -1 3643 56 2 0 chrX 28252360 28252821 -134347109 + L1PA7 LINE L1 5692 6153 -1 578 289 59 75 chrX 28253199 28253596 -134346334 - L2 LINE L2 -248 3024 2625 2327 80 7 3 chrX 28253662 28253961 -134345969 + AluSc SINE Alu 1 300 -9 276 340 39 39 chrX 28254079 28254285 -134345645 - L2 LINE L2 -2184 1130 925 286 298 218 0 chrX 28254514 28254638 -134345292 - MIR3 SINE MIR -26 182 32 2417 76 7 0 chrX 28255440 28255744 -134344186 - AluSc SINE Alu -3 306 1 994 208 23 14 chrX 28255765 28255981 -134343949 - MER20 DNA MER1_type 0 219 2 288 250 170 18 chrX 28256195 28256307 -134343623 + LTR16B LTR ERVL 323 451 -13 280 145 43 29 chrX 28256532 28256601 -134343329 + MLT1K LTR MaLR 519 588 0 2415 70 7 0 chrX 28256884 28257185 -134342745 + AluY SINE Alu 1 303 -8 230 0 0 103 chrX 28258540 28258579 -134341351 + (A)n Simple_repeat Simple_repeat 1 35 0 258 233 17 0 chrX 28259673 28259733 -134340197 - MIR SINE MIR -1 261 201 682 224 12 0 chrX 28259849 28260019 -134339911 - AluSx SINE Alu -134 178 7 343 322 10 58 chrX 28260439 28260647 -134339283 + MIR3 SINE MIR 1 198 -10 211 219 24 0 chrX 28260751 28260792 -134339138 + L2 LINE L2 3266 3307 -6 1168 136 48 44 chrX 28261742 28261791 -134338139 - L1MB1 LINE L1 0 6168 6121 1912 45 0 41 chrX 28261791 28262034 -134337896 - AluY SINE Alu -15 296 64 1168 136 48 44 chrX 28262034 28262212 -134337718 - L1MB1 LINE L1 -47 6121 5940 1099 295 58 59 chrX 28262994 28263583 -134336347 + L2 LINE L2 2338 2925 -389 954 125 5 26 chrX 28263686 28263902 -134336028 - MER4A LTR ERV1 -134 530 261 650 111 0 10 chrX 28263902 28264001 -134335929 - MER4A LTR ERV1 -566 98 1 227 339 0 0 chrX 28264001 28264063 -134335867 - L3 LINE CR1 -472 1105 1044 1660 188 138 95 chrX 28264509 28265217 -134334713 + LTR1B LTR ERV1 7 745 -81 997 193 6 0 chrX 28265303 28265469 -134334461 + FAM SINE Alu 5 171 -4 872 157 0 0 chrX 28265527 28265648 -134334282 + FLAM_C SINE Alu 1 121 -22 587 233 28 107 chrX 28265864 28266079 -134333851 + MIR SINE MIR 48 245 -17 1062 72 0 0 chrX 28268030 28268169 -134331761 + L1PA14 LINE L1 6021 6159 -2 231 114 0 0 chrX 28268303 28268338 -134331592 + (TAA)n Simple_repeat Simple_repeat 2 36 0 357 276 141 19 chrX 28268396 28268552 -134331378 - MIR SINE MIR -74 188 14 2231 99 0 3 chrX 28268918 28269231 -134330699 - AluSq SINE Alu 0 312 1 2392 74 0 29 chrX 28269232 28269542 -134330388 - AluY SINE Alu -7 304 4 21 0 0 0 chrX 28269704 28269725 -134330205 + AT_rich Low_complexity Low_complexity 1 21 0 649 323 136 3 chrX 28270455 28270771 -134329159 + L3 LINE CR1 1207 1564 -13 243 267 47 23 chrX 28270850 28270936 -134328994 + MIR3 SINE MIR 115 202 -6 672 261 113 0 chrX 28271100 28271295 -134328635 - MIR SINE MIR -6 256 40 465 279 78 25 chrX 28271299 28271503 -134328427 - MER58C DNA MER1_type 0 215 1 497 250 111 17 chrX 28271542 28271722 -134328208 - MIR SINE MIR -7 255 59 429 335 57 11 chrX 28272021 28272197 -134327733 + MIR3 SINE MIR 11 194 -14 180 0 0 0 chrX 28274707 28274727 -134325203 + (T)n Simple_repeat Simple_repeat 1 20 0 521 231 50 0 chrX 28275771 28275892 -134324038 + L2 LINE L2 3187 3313 0 369 0 0 0 chrX 28276371 28276412 -134323518 + (CA)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chrX 28277327 28277351 -134322579 + (A)n Simple_repeat Simple_repeat 1 24 0 2579 13 7 3 chrX 28277465 28277763 -134322167 + AluY SINE Alu 1 299 -12 228 266 0 16 chrX 28278304 28278368 -134321562 - MLT1L LTR MaLR -348 267 205 275 49 24 0 chrX 28278937 28278978 -134320952 + (TC)n Simple_repeat Simple_repeat 1 42 0 2195 114 0 0 chrX 28279098 28279388 -134320542 - AluSx SINE Alu -22 290 1 1307 308 196 20 chrX 28279921 28280812 -134319118 - L2 LINE L2 -256 3057 2001 197 352 24 32 chrX 28281311 28281436 -134318494 - MIR3 SINE MIR -31 177 54 292 355 10 25 chrX 28281486 28281683 -134318247 + MER117 DNA MER1_type 3 196 -1 324 215 0 0 chrX 28281947 28282012 -134317918 + L1MD3 LINE L1 7899 7963 -32 2291 92 0 0 chrX 28282064 28282372 -134317558 - AluSx SINE Alu 0 308 1 206 359 19 10 chrX 28282372 28282475 -134317455 + MIR3 SINE MIR 101 204 -4 1081 268 45 42 chrX 28282559 28282686 -134317244 - L2 LINE L2 -11 3302 3177 2304 82 6 22 chrX 28282686 28283002 -134316928 + AluY SINE Alu 1 311 0 1081 268 45 42 chrX 28283002 28283255 -134316675 - L2 LINE L2 -136 3177 2921 2200 123 0 0 chrX 28283287 28283587 -134316343 + AluSx SINE Alu 1 300 -12 413 256 128 30 chrX 28283603 28283736 -134316194 - MIR3 SINE MIR -42 166 21 394 319 86 0 chrX 28284303 28284419 -134315511 - L2 LINE L2 -2 3270 3145 6079 40 5 4 chrX 28284595 28285338 -134314592 - L1PA5 LINE L1 0 6154 5411 605 121 0 0 chrX 28285361 28285452 -134314478 + L1MA1 LINE L1 6209 6299 -3 1624 137 82 85 chrX 28287016 28287382 -134312548 + MLT1A1 LTR MaLR 1 365 0 324 281 29 88 chrX 28287430 28287704 -134312226 - MIR SINE MIR 0 262 5 810 147 0 7 chrX 28288573 28288716 -134311214 + L1MB7 LINE L1 6027 6168 -16 234 0 0 0 chrX 28289539 28289565 -134310365 + (T)n Simple_repeat Simple_repeat 1 26 0 247 290 203 14 chrX 28290267 28290405 -134309525 + MIR SINE MIR 50 213 -49 462 340 104 5 chrX 28290502 28290714 -134309216 + MIR SINE MIR 27 259 -3 2387 94 0 3 chrX 28290810 28291119 -134308811 - AluSg SINE Alu -2 308 1 472 310 56 29 chrX 28291927 28292253 -134307677 - MLT1L LTR MaLR -73 542 109 1087 139 0 6 chrX 28292599 28292764 -134307166 + FRAM SINE Alu 11 174 -2 602 256 25 19 chrX 28292782 28292942 -134306988 + MER5A DNA MER1_type 29 189 0 2171 91 0 11 chrX 28293068 28293355 -134306575 + AluSx SINE Alu 4 287 -25 26 64 0 0 chrX 28293355 28293402 -134306528 + AT_rich Low_complexity Low_complexity 1 47 0 2132 126 0 16 chrX 28293987 28294304 -134305626 + AluSx SINE Alu 1 312 0 1582 100 14 5 chrX 28295299 28295519 -134304411 + AluSg/x SINE Alu 79 300 -10 805 154 0 31 chrX 28296185 28296315 -134303615 - FLAM_A SINE Alu -7 126 1 262 307 27 0 chrX 28296335 28296410 -134303520 - MIR SINE MIR 0 262 186 489 127 13 0 chrX 28296790 28296869 -134303061 + MADE1 DNA Mariner 1 80 0 30 0 0 0 chrX 28297036 28297066 -134302864 + AT_rich Low_complexity Low_complexity 1 30 0 305 168 19 0 chrX 28297456 28297530 -134302400 + MIR SINE MIR 102 176 -86 * 549 260 33 13 chrX 28297528 28297678 -134302252 - L2 LINE L2 -1 3312 3160 313 247 13 0 chrX 28297658 28297735 -134302195 + MIR SINE MIR 185 262 0 * 268 253 130 62 chrX 28297747 28297893 -134302037 - MIR SINE MIR -99 163 8 400 348 12 30 chrX 28297908 28298072 -134301858 + MER5B DNA MER1_type 18 178 0 207 263 0 18 chrX 28299144 28299201 -134300729 + G-rich Low_complexity Low_complexity 3 58 0 189 0 0 0 chrX 28300344 28300365 -134299565 + (A)n Simple_repeat Simple_repeat 1 21 0 319 151 27 3 chrX 28301310 28301387 -134298543 + AluS SINE Alu 1 57 -251 23 0 0 0 chrX 28301405 28301428 -134298502 + AT_rich Low_complexity Low_complexity 1 23 0 320 254 119 68 chrX 28302447 28302565 -134297365 - L2 LINE L2 0 3313 3190 299 161 0 16 chrX 28302873 28302935 -134296995 + GA-rich Low_complexity Low_complexity 1 61 0 523 209 64 0 chrX 28303026 28303136 -134296794 - L2 LINE L2 0 3313 3197 196 304 13 25 chrX 28303545 28303624 -134296306 + L2 LINE L2 2283 2360 -954 22 35 0 0 chrX 28304500 28304529 -134295401 + AT_rich Low_complexity Low_complexity 1 29 0 636 254 123 42 chrX 28304543 28304779 -134295151 + MIR SINE MIR 8 262 0 2323 123 0 0 chrX 28304822 28305131 -134294799 - AluSx SINE Alu -3 309 1 574 181 141 20 chrX 28305180 28305329 -134294601 - MIR SINE MIR -10 252 86 268 189 0 0 chrX 28305332 28305385 -134294545 - MLT2B1 LTR ERVL -3 517 465 294 164 0 0 chrX 28305385 28305440 -134294490 + (TG)n Simple_repeat Simple_repeat 1 55 0 1283 191 52 53 chrX 28305450 28305849 -134294081 - MLT2B1 LTR ERVL -71 449 1 253 0 54 0 chrX 28305905 28305942 -134293988 + (TC)n Simple_repeat Simple_repeat 2 40 0 369 0 0 0 chrX 28305942 28305983 -134293947 + (CA)n Simple_repeat Simple_repeat 1 41 0 278 301 25 49 chrX 28306028 28306191 -134293739 - L2 LINE L2 -6 3307 3149 1859 125 77 0 chrX 28307144 28307416 -134292514 - AluSx SINE Alu -19 293 1 22 35 0 0 chrX 28307443 28307472 -134292458 + AT_rich Low_complexity Low_complexity 1 29 0 382 141 0 42 chrX 28308313 28308384 -134291546 - U6 snRNA snRNA -35 72 5 5131 136 40 2 chrX 28308535 28309471 -134290459 + L1MA4A LINE L1 5332 6302 -1 2169 106 0 13 chrX 28309543 28309846 -134290084 - AluSx SINE Alu 0 312 14 24 32 0 0 chrX 28309902 28309933 -134289997 + AT_rich Low_complexity Low_complexity 1 31 0 715 211 163 48 chrX 28310186 28310413 -134289517 - MIR SINE MIR -5 257 5 2099 108 3 37 chrX 28311229 28311552 -134288378 + AluSx SINE Alu 1 312 0 629 357 59 0 chrX 28312769 28313091 -134286839 - L2 LINE L2 -1972 1342 1002 396 133 0 0 chrX 28313270 28313353 -134286577 + (TA)n Simple_repeat Simple_repeat 1 83 0 866 286 86 8 chrX 28314173 28314533 -134285397 - LTR16A1 LTR ERVL -68 389 2 2261 104 10 0 chrX 28314638 28315085 -134284845 - AluSq SINE Alu 0 450 1 2247 110 0 0 chrX 28315806 28316105 -134283825 + AluSq SINE Alu 3 301 -12 731 181 0 0 chrX 28316432 28316576 -134283354 + L1MB3 LINE L1 5227 5370 -776 400 154 26 0 chrX 28316575 28316653 -134283277 + L1MB3 LINE L1 5937 6016 -167 * 2155 81 14 20 chrX 28316655 28316950 -134282980 - AluSx SINE Alu -8 304 12 1771 72 5 0 chrX 28317139 28317360 -134282570 + AluSp SINE Alu 66 287 -26 2330 89 10 0 chrX 28317673 28317977 -134281953 + AluY SINE Alu 3 309 -2 280 309 88 55 chrX 28318569 28318750 -134281180 + MLT1L LTR MaLR 91 277 -338 365 295 30 77 chrX 28318765 28318999 -134280931 + L2 LINE L2 2912 3134 -179 250 336 68 27 chrX 28321424 28321570 -134278360 - L3 LINE CR1 -1014 563 412 2135 131 6 10 chrX 28321745 28322057 -134277873 - AluSx SINE Alu -1 311 1 219 69 0 0 chrX 28323238 28323267 -134276663 + (GA)n Simple_repeat Simple_repeat 2 30 0 255 346 19 29 chrX 28323314 28323418 -134276512 - MER91A DNA MER1_type -22 174 72 489 296 116 59 chrX 28323865 28324237 -134275693 - L2 LINE L2 -9 3304 2912 560 132 0 73 chrX 28324237 28324373 -134275557 + FLAM_C SINE Alu 1 126 -17 21 0 0 0 chrX 28324502 28324523 -134275407 + GC_rich Low_complexity Low_complexity 1 21 0 669 107 58 0 chrX 28324556 28324659 -134275271 + AluSc SINE Alu 193 301 -8 1907 91 24 44 chrX 28325371 28325667 -134274263 + AluSx SINE Alu 23 312 0 22 0 0 0 chrX 28326303 28326325 -134273605 + AT_rich Low_complexity Low_complexity 1 22 0 420 206 120 124 chrX 28326950 28327186 -134272744 + MLT1F LTR MaLR 292 513 -29 2296 81 3 7 chrX 28327270 28327566 -134272364 - AluSg SINE Alu -15 295 1 456 192 120 32 chrX 28327582 28327707 -134272223 + L2 LINE L2 3178 3313 0 339 283 65 0 chrX 28327754 28327846 -134272084 + MLT1L LTR MaLR 419 516 -99 2237 166 27 7 chrX 28327896 28328299 -134271631 - MSTB LTR MaLR -15 411 1 316 302 60 9 chrX 28328927 28329043 -134270887 - L2 LINE L2 -219 3053 2932 311 287 35 0 chrX 28329071 28329158 -134270772 - L1MC4 LINE L1 -1339 6703 6614 221 167 19 56 chrX 28329158 28329212 -134270718 + (CA)n Simple_repeat Simple_repeat 2 53 0 186 226 0 57 chrX 28329467 28329520 -134270410 - L2 LINE L2 0 3272 3223 208 53 53 0 chrX 28330525 28330563 -134269367 + (CACAA)n Simple_repeat Simple_repeat 5 44 0 431 368 51 63 chrX 28332523 28333374 -134266556 - L2 LINE L2 -20 3252 2405 1755 212 164 20 chrX 28333374 28333993 -134265937 - LTR68 LTR ERV1 0 740 1 440 178 31 147 chrX 28334618 28334747 -134265183 + MER81 DNA DNA 1 114 0 2687 39 0 0 chrX 28334819 28335124 -134264806 - AluY SINE Alu -6 305 1 274 250 69 0 chrX 28335663 28335735 -134264195 - L2 LINE L2 0 3272 3196 181 292 62 0 chrX 28336722 28336770 -134263160 - MIR SINE MIR -136 126 76 2260 64 4 4 chrX 28336965 28337269 -134262661 - AluSc SINE Alu 0 304 1 2182 79 13 44 chrX 28337315 28337631 -134262299 - AluSx SINE Alu -4 308 3 24726 124 10 71 chrX 28339100 28343991 -134255939 + L1P LINE L1 12 4601 -1545 318 314 14 18 chrX 28345334 28345557 -134254373 + L1ME LINE L1 5547 5768 -353 506 197 182 5 chrX 28347253 28347391 -134252539 + MER5A DNA MER1_type 17 184 -5 356 192 0 0 chrX 28347399 28347472 -134252458 - Charlie5 DNA MER1_type -27 2585 2513 262 108 0 0 chrX 28347504 28347541 -134252389 - Charlie1 DNA MER1_type -872 1889 1853 186 293 49 61 chrX 28348274 28348356 -134251574 - L2 LINE L2 -239 3033 2953 22 0 0 0 chrX 28352120 28352142 -134247788 + AT_rich Low_complexity Low_complexity 1 22 0 1602 99 0 19 chrX 28352476 28352689 -134247241 + AluSx SINE Alu 1 209 -103 337 133 0 17 chrX 28352689 28352739 -134247191 + Alu SINE Alu 250 300 0 186 167 0 0 chrX 28352741 28352777 -134247153 + (TA)n Simple_repeat Simple_repeat 2 37 0 397 256 0 0 chrX 28352777 28352867 -134247063 - L1MC4 LINE L1 -1339 6703 6614 249 33 0 0 chrX 28352897 28352927 -134247003 + (GA)n Simple_repeat Simple_repeat 2 31 0 271 258 32 0 chrX 28352940 28353002 -134246928 - MIR3 SINE MIR -20 188 125 285 109 65 0 chrX 28355415 28355461 -134244469 - MER112 DNA MER1_type -211 49 1 2106 124 10 0 chrX 28355542 28355849 -134244081 + AluSx SINE Alu 1 310 -2 2253 151 20 0 chrX 28356338 28356696 -134243234 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 28356738 28356760 -134243170 + AT_rich Low_complexity Low_complexity 1 22 0 2278 100 7 3 chrX 28356797 28357097 -134242833 + AluSq SINE Alu 1 301 -12 1889 53 4 0 chrX 28357279 28357505 -134242425 + AluSc SINE Alu 83 309 0 689 222 52 0 chrX 28358883 28359036 -134240894 + MER5B DNA MER1_type 18 178 0 1654 204 119 91 chrX 28359861 28360586 -134239344 - LTR1B LTR ERV1 -81 745 1 198 191 0 0 chrX 28360586 28360628 -134239302 + (TAG)n Simple_repeat Simple_repeat 3 44 0 1364 81 14 18 chrX 28360696 28360919 -134239011 - LTR7 LTR ERV1 -2 448 227 1054 194 0 16 chrX 28361638 28361829 -134238101 - MER5A DNA MER1_type -1 188 1 22 35 0 0 chrX 28361859 28361888 -134238042 + AT_rich Low_complexity Low_complexity 1 29 0 2226 118 3 3 chrX 28362628 28362934 -134236996 - AluSx SINE Alu -6 306 1 232 248 40 84 chrX 28363350 28363476 -134236454 + MER5B DNA MER1_type 4 152 -37 336 320 58 10 chrX 28363839 28363942 -134235988 - MIR3 SINE MIR -2 206 99 891 217 20 117 chrX 28364090 28364491 -134235439 + MER57A LTR ERV1 42 403 0 1505 167 14 0 chrX 28365040 28365334 -134234596 + L1 LINE L1 4769 5066 -1080 473 316 19 58 chrX 28366423 28366629 -134233301 - MIR3 SINE MIR -5 203 6 590 203 8 41 chrX 28367096 28367219 -134232711 + L2 LINE L2 3195 3313 0 180 0 0 0 chrX 28368535 28368555 -134231375 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 765 229 33 84 chrX 28368707 28368762 -134231168 + MIR SINE MIR 1 57 -205 2498 71 0 3 chrX 28368762 28369072 -134230858 - AluSc SINE Alu 0 309 1 765 229 33 84 chrX 28369072 28369291 -134230639 + MIR SINE MIR 57 261 -1 401 316 25 32 chrX 28373259 28373471 -134226459 - MIR SINE MIR -50 212 1 2527 60 0 7 chrX 28373647 28373949 -134225981 - AluY SINE Alu -11 300 1 327 49 0 0 chrX 28374378 28374419 -134225511 + (TATAA)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chrX 28374453 28374479 -134225451 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 11232 24 0 0 chrX 28374479 28376557 -134223373 - L1PA3 LINE L1 -7 6148 4072 914 255 31 12 chrX 28376877 28377132 -134222798 - MIR SINE MIR 0 262 3 217 348 127 17 chrX 28377641 28377822 -134222108 + MIR SINE MIR 49 249 -13 519 174 226 37 chrX 28379240 28379430 -134220500 + MER5C DNA MER1_type 64 289 -35 266 303 9 73 chrX 28380326 28380435 -134219495 + MIR SINE MIR 152 253 -9 414 0 0 0 chrX 28381059 28381105 -134218825 + (CA)n Simple_repeat Simple_repeat 2 47 0 318 282 71 31 chrX 28381859 28382001 -134217929 - MIR SINE MIR -77 131 40 1798 122 83 47 chrX 28383329 28383691 -134216239 + THE1C LTR MaLR 1 375 0 2545 49 0 3 chrX 28383815 28384120 -134215810 - AluY SINE Alu -7 304 1 2274 97 0 13 chrX 28384302 28384601 -134215329 - AluSq SINE Alu -16 297 3 2362 171 30 2 chrX 28384994 28385397 -134214533 - Tigger4(Zombi) DNA MER2_type -2317 414 1 326 340 75 34 chrX 28385400 28385547 -134214383 + L2 LINE L2 3161 3313 0 317 267 267 0 chrX 28385859 28385964 -134213966 - MER91C DNA MER1_type -7 133 1 363 267 12 0 chrX 28386120 28386206 -134213724 + MER117 DNA MER1_type 2 88 -109 352 336 148 0 chrX 28386287 28386409 -134213521 - MIR3 SINE MIR -49 159 20 401 307 8 39 chrX 28386826 28386953 -134212977 - L2 LINE L2 -19 3294 3172 180 302 19 0 chrX 28388072 28388125 -134211805 - L2 LINE L2 0 3272 3219 505 222 0 32 chrX 28388125 28388251 -134211679 + MER3 DNA MER1_type 48 122 -87 1474 164 91 40 chrX 28388258 28388373 -134211557 + MER3 DNA MER1_type 2233 2341 -283 3768 57 2 0 chrX 28388373 28388845 -134211085 - L1PA5 LINE L1 0 6154 5682 1474 164 91 40 chrX 28388845 28389102 -134210828 + MER3 DNA MER1_type 2341 2624 0 324 356 54 7 chrX 28389221 28389370 -134210560 - L2 LINE L2 -181 3091 2936 665 260 101 36 chrX 28389386 28389605 -134210325 + MIR SINE MIR 3 235 -27 396 313 17 1 chrX 28389927 28390069 -134209861 + MLT1J2 LTR MaLR 15 157 -289 23 0 0 0 chrX 28390171 28390194 -134209736 + AT_rich Low_complexity Low_complexity 1 23 0 2233 107 7 0 chrX 28390194 28390504 -134209426 - AluSx SINE Alu 0 312 1 275 178 4 141 chrX 28390506 28390700 -134209230 + MLT1J LTR MaLR 287 459 0 2045 105 49 7 chrX 28391090 28391376 -134208554 + AluSg SINE Alu 1 298 -12 1145 212 88 41 chrX 28391481 28391844 -134208086 + MER39 LTR ERV1 325 704 -3 475 285 62 0 chrX 28392849 28392979 -134206951 - MIR SINE MIR -18 244 107 213 237 13 66 chrX 28393205 28393281 -134206649 - MIR SINE MIR -10 252 181 206 32 32 0 chrX 28393922 28393953 -134205977 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 211 322 28 55 chrX 28395043 28395189 -134204741 - MIR3 SINE MIR -48 160 17 611 262 33 22 chrX 28395219 28395402 -134204528 + MER5A DNA MER1_type 1 185 -4 833 162 7 0 chrX 28395582 28395724 -134204206 - FLAM_C SINE Alu 0 143 1 700 248 68 61 chrX 28397855 28397933 -134201997 - LTR16C LTR ERVL -68 423 347 2277 100 7 0 chrX 28397933 28398232 -134201698 + AluSx SINE Alu 1 301 -11 700 248 68 61 chrX 28398232 28398431 -134201499 - LTR16C LTR ERVL -144 347 144 1786 193 0 0 chrX 28399211 28399507 -134200423 - AluJb SINE Alu -16 296 1 368 297 115 14 chrX 28399748 28399896 -134200034 + MIR SINE MIR 18 180 -82 249 33 0 0 chrX 28399950 28399980 -134199950 + (TAG)n Simple_repeat Simple_repeat 3 32 0 787 235 33 0 chrX 28400076 28400259 -134199671 + MER5A DNA MER1_type 1 189 0 487 223 123 0 chrX 28401168 28401298 -134198632 - MER5B DNA MER1_type -8 170 25 29 0 0 0 chrX 28401522 28401551 -134198379 + AT_rich Low_complexity Low_complexity 1 29 0 205 208 0 21 chrX 28401616 28401664 -134198266 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 778 229 23 23 chrX 28402056 28402231 -134197699 + MER63A DNA MER1_type 2 176 -34 22 0 0 0 chrX 28402994 28403016 -134196914 + AT_rich Low_complexity Low_complexity 1 22 0 2413 85 0 0 chrX 28403016 28403322 -134196608 + AluY SINE Alu 1 306 -5 23 0 0 0 chrX 28403728 28403751 -134196179 + AT_rich Low_complexity Low_complexity 1 23 0 430 318 53 0 chrX 28404441 28404573 -134195357 + L2 LINE L2 3129 3267 -5 350 248 215 13 chrX 28405290 28405439 -134194491 - MER5A DNA MER1_type 0 189 11 260 169 0 17 chrX 28405566 28405625 -134194305 + (TA)n Simple_repeat Simple_repeat 1 58 0 2699 23 3 0 chrX 28406597 28406901 -134193029 + AluY SINE Alu 2 306 -5 241 186 0 0 chrX 28406969 28407012 -134192918 + Tigger2 DNA MER2_type 2666 2708 -10 271 325 26 0 chrX 28407447 28407524 -134192406 - MER5A DNA MER1_type -77 112 34 2297 124 8 6 chrX 28407901 28408263 -134191667 + Tigger2 DNA MER2_type 2356 2718 0 22 35 0 0 chrX 28409276 28409305 -134190625 + AT_rich Low_complexity Low_complexity 1 29 0 640 298 66 52 chrX 28409425 28409941 -134189989 - L1MC/D LINE L1 -2029 5779 5257 423 337 18 46 chrX 28410098 28410286 -134189644 - L1MC/D LINE L1 -1118 5028 4850 2297 75 18 0 chrX 28410286 28410596 -134189334 - AluSq SINE Alu 0 315 1 423 337 18 46 chrX 28410596 28410732 -134189198 - L1MC/D LINE L1 -1296 4850 4712 423 274 58 43 chrX 28410960 28411069 -134188861 + L1MC4a LINE L1 5716 5831 -1977 2470 150 58 16 chrX 28411069 28411517 -134188413 + MLT1C LTR MaLR 1 467 0 423 274 58 43 chrX 28411517 28411615 -134188315 + L1MC4a LINE L1 5831 5926 -1882 206 196 18 18 chrX 28411617 28411673 -134188257 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 234 257 59 10 chrX 28411760 28411861 -134188069 + L1MC4a LINE L1 6073 6178 -1630 227 307 53 13 chrX 28412185 28412260 -134187670 + MIR3 SINE MIR 96 173 -35 4947 209 35 58 chrX 28412288 28414148 -134185782 - L1MD1 LINE L1 0 6636 4734 232 278 0 0 chrX 28414148 28414202 -134185728 + Tigger5 DNA MER2_type 2 55 -2268 * 360 206 0 0 chrX 28414176 28414244 -134185686 + Tigger5 DNA MER2_type 2256 2323 0 * 4947 209 35 58 chrX 28414244 28414880 -134185050 - L1MD1 LINE L1 -1944 4692 4109 307 287 11 11 chrX 28414880 28414967 -134184963 - L1MD1 LINE L1 -3090 3450 3364 415 283 99 0 chrX 28414980 28415132 -134184798 - LTR40b LTR ERVL -102 360 194 411 195 46 0 chrX 28415266 28415353 -134184577 - L1MD1 LINE L1 -4545 1995 1905 344 169 135 22 chrX 28415581 28415670 -134184260 + L1MC4 LINE L1 6605 6703 -1339 336 275 0 11 chrX 28415595 28415686 -134184244 - L1MC4 LINE L1 -1339 6703 6614 * 558 229 6 25 chrX 28415701 28415858 -134184072 + LTR37A LTR ERV1 268 421 -5 2272 204 20 6 chrX 28415947 28416441 -134183489 - L1MD3 LINE L1 -85 7910 7410 255 218 103 58 chrX 28416441 28416528 -134183402 - MLT1F1 LTR MaLR -442 125 35 360 0 0 0 chrX 28417283 28417323 -134182607 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chrX 28417464 28417492 -134182438 + AT_rich Low_complexity Low_complexity 1 28 0 229 274 39 0 chrX 28417492 28417543 -134182387 + L2 LINE L2 3134 3186 -86 482 191 106 0 chrX 28417587 28417681 -134182249 - MER3 DNA MER1_type -90 119 16 1169 199 14 0 chrX 28417703 28417919 -134182011 - MER20 DNA MER1_type 0 219 1 1035 103 0 6 chrX 28418021 28418177 -134181753 + L1PA14 LINE L1 6005 6159 -2 1027 293 25 50 chrX 28418434 28418793 -134181137 + LTR16C LTR ERVL 44 393 -98 315 337 70 43 chrX 28418836 28419023 -134180907 - HAL1 LINE L1 -2265 242 51 434 280 129 24 chrX 28419912 28420130 -134179800 - MIR SINE MIR -9 253 17 2428 84 0 0 chrX 28420163 28420471 -134179459 - AluY SINE Alu -3 308 1 898 206 32 9 chrX 28422036 28422254 -134177676 - L1MD3 LINE L1 0 7995 7773 21 0 0 0 chrX 28422255 28422276 -134177654 + AT_rich Low_complexity Low_complexity 1 21 0 1698 82 133 4 chrX 28422782 28423037 -134176893 - AluSg1 SINE Alu -21 288 1 379 251 92 46 chrX 28424233 28424413 -134175517 - MIR3 SINE MIR -63 145 11 268 172 0 0 chrX 28425697 28425755 -134174175 - MER113 DNA MER1_type? -409 112 55 2015 178 80 45 chrX 28425773 28426261 -134173669 - MLT1D LTR MaLR 0 505 1 367 284 90 8 chrX 28426470 28426604 -134173326 + MLT1H LTR MaLR 382 526 -23 183 80 0 0 chrX 28426824 28426849 -134173081 + (TC)n Simple_repeat Simple_repeat 2 26 0 184 327 36 0 chrX 28426932 28426987 -134172943 + L2 LINE L2 3214 3270 -2 673 0 0 0 chrX 28428058 28428136 -134171794 + L1PA3 LINE L1 6075 6152 -3 233 319 198 39 chrX 28428388 28428620 -134171310 - L2 LINE L2 -457 2857 2589 232 319 129 37 chrX 28428620 28428783 -134171147 - MIR SINE MIR -1 261 84 301 365 139 5 chrX 28428845 28429053 -134170877 - L2 LINE L2 -756 2558 2323 288 311 68 47 chrX 28429169 28429490 -134170440 - L2 LINE L2 -998 2316 1989 571 179 32 16 chrX 28429654 28429777 -134170153 - L1PA3 LINE L1 -3 6152 6028 3590 35 0 0 chrX 28429786 28430219 -134169711 - L1PA4 LINE L1 -6 6149 5717 922 60 46 7 chrX 28430219 28430370 -134169560 - L1PA10 LINE L1 -101 6067 5911 1018 153 0 47 chrX 28431378 28431574 -134168356 - AluJo SINE Alu 0 329 140 1814 80 0 0 chrX 28431574 28431798 -134168132 - AluSg/x SINE Alu -16 296 73 1018 153 0 47 chrX 28431798 28431818 -134168112 - AluJo SINE Alu -189 140 121 665 205 0 8 chrX 28431839 28431961 -134167969 - AluJo SINE Alu -191 121 1 362 162 54 40 chrX 28431963 28432037 -134167893 - MER94 DNA DNA -59 75 1 188 273 91 0 chrX 28432202 28432257 -134167673 - L2 LINE L2 -19 3294 3235 348 202 21 11 chrX 28433311 28433405 -134166525 + MER53 DNA DNA 95 189 0 1799 162 0 17 chrX 28433687 28433983 -134165947 - AluJb SINE Alu -21 291 1 23864 31 0 0 chrX 28436798 28439690 -134160240 - L1P LINE L1 -2026 4120 1228 7720 20 0 1 chrX 28439690 28440742 -134159188 + L1HS LINE L1 5105 6155 0 189 0 0 0 chrX 28440747 28440768 -134159162 + (A)n Simple_repeat Simple_repeat 1 21 0 296 341 23 39 chrX 28440899 28441028 -134158902 - L2 LINE L2 -2 3270 3144 8971 21 2 0 chrX 28441834 28442885 -134157045 + L1P LINE L1 4090 5142 -1004 218 179 0 0 chrX 28443040 28443079 -134156851 - L2 LINE L2 -63 3209 3171 1044 308 66 62 chrX 28443786 28444768 -134155162 + L2 LINE L2 1304 2289 -1025 190 302 31 62 chrX 28444775 28444871 -134155059 + L2 LINE L2 2576 2668 -646 * 325 312 33 65 chrX 28444844 28445059 -134154871 + L2 LINE L2 2871 3078 -194 1066 202 0 0 chrX 28446097 28446280 -134153650 + MER5A DNA MER1_type 7 189 0 183 42 0 0 chrX 28446898 28446922 -134153008 + (TA)n Simple_repeat Simple_repeat 1 24 0 214 326 21 11 chrX 28447064 28447159 -134152771 + L2 LINE L2 2934 3029 -243 264 246 36 0 chrX 28447325 28447435 -134152495 + G-rich Low_complexity Low_complexity 2 115 0 450 393 0 16 chrX 28447463 28447646 -134152284 + polypurine Low_complexity Low_complexity 1 180 0 450 228 0 37 chrX 28447646 28447808 -134152122 + G-rich Low_complexity Low_complexity 3 158 0 2008 134 3 10 chrX 28449191 28449496 -134150434 + AluJb SINE Alu 6 308 -4 22 0 0 0 chrX 28449633 28449655 -134150275 + AT_rich Low_complexity Low_complexity 1 22 0 436 248 27 0 chrX 28449888 28450000 -134149930 + MER5A DNA MER1_type 2 104 -74 188 79 53 0 chrX 28450057 28450095 -134149835 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 737 274 17 17 chrX 28450098 28450273 -134149657 + MER5A DNA MER1_type 2 176 -13 251 250 0 0 chrX 28451250 28451302 -134148628 + MARNA DNA Mariner 438 489 -97 1575 114 42 4 chrX 28451348 28451612 -134148318 + L1MA8 LINE L1 6012 6285 -6 316 325 89 46 chrX 28451773 28452075 -134147855 + L2 LINE L2 2038 2352 -962 674 224 44 11 chrX 28452076 28452259 -134147671 + MER5A DNA MER1_type 1 189 0 1743 215 24 100 chrX 28452289 28452837 -134147093 + MER74B LTR ERVL 58 563 -59 225 325 165 34 chrX 28453044 28453250 -134146680 + L2 LINE L2 2542 2774 -540 699 188 7 0 chrX 28453921 28454059 -134145871 + L1PB4 LINE L1 6015 6153 -3 22 0 0 0 chrX 28454239 28454261 -134145669 + AT_rich Low_complexity Low_complexity 1 22 0 1522 172 56 0 chrX 28455121 28455423 -134144507 + MER33 DNA MER1_type 6 324 0 347 313 73 73 chrX 28456069 28456344 -134143586 + L2 LINE L2 2981 3255 -17 228 143 0 36 chrX 28456444 28456500 -134143430 - Charlie5 DNA MER1_type -19 2593 2540 253 82 41 0 chrX 28456502 28456551 -134143379 + (TA)n Simple_repeat Simple_repeat 2 52 0 373 279 44 44 chrX 28457322 28457458 -134142472 - MIR SINE MIR -98 164 29 360 284 0 10 chrX 28457486 28457588 -134142342 + MER5B DNA MER1_type 6 106 -72 928 218 22 53 chrX 28458215 28458440 -134141490 - MER20 DNA MER1_type -1 218 1 183 203 81 68 chrX 28460649 28460723 -134139207 + MIR3 SINE MIR 81 155 -53 520 196 312 0 chrX 28460978 28461116 -134138814 + MER5A DNA MER1_type 9 189 0 500 206 157 94 chrX 28461237 28461460 -134138470 - L2 LINE L2 -2 3311 3075 1689 155 0 67 chrX 28462254 28462570 -134137360 - AluJo SINE Alu -17 295 1 335 227 15 0 chrX 28463541 28463607 -134136323 + L2 LINE L2 3246 3312 -1 1902 151 7 7 chrX 28464077 28464375 -134135555 - AluJb SINE Alu -10 302 5 216 0 0 0 chrX 28464657 28464681 -134135249 + (T)n Simple_repeat Simple_repeat 1 24 0 964 269 76 66 chrX 28464695 28465181 -134134749 + LTR33 LTR ERVL 27 517 -4 282 264 44 22 chrX 28467086 28467177 -134132753 + MLT1H LTR MaLR 82 174 -375 299 191 64 64 chrX 28467357 28467451 -134132479 + MLT1G1 LTR MaLR 487 580 -15 203 239 134 30 chrX 28468473 28468540 -134131390 + MIR3 SINE MIR 125 198 -10 2107 110 51 46 chrX 28470089 28470462 -134129468 + THE1C LTR MaLR 1 375 0 540 252 75 75 chrX 28472785 28473063 -134126867 - MLT1H LTR MaLR -233 316 39 216 67 0 0 chrX 28473654 28473684 -134126246 + (TG)n Simple_repeat Simple_repeat 2 31 0 307 195 41 0 chrX 28474174 28474297 -134125633 + CT-rich Low_complexity Low_complexity 2 129 0 350 274 192 27 chrX 28475285 28475431 -134124499 - MER5A DNA MER1_type -1 188 19 199 340 100 0 chrX 28475457 28475557 -134124373 - MIR SINE MIR -61 147 38 319 113 0 0 chrX 28475682 28475735 -134124195 - L1MB4 LINE L1 0 6180 6128 1339 184 36 0 chrX 28475756 28476006 -134123924 - AluJo SINE Alu -53 259 1 1526 195 34 40 chrX 28476023 28476460 -134123470 - L1MB3 LINE L1 -6 6298 5804 1263 281 157 16 chrX 28477277 28477767 -134122163 + MLT1G1 LTR MaLR 1 595 0 21 0 0 0 chrX 28478928 28478949 -134120981 + AT_rich Low_complexity Low_complexity 1 21 0 635 319 86 0 chrX 28480062 28480294 -134119636 - MIR SINE MIR 0 262 11 502 303 8 0 chrX 28480705 28480827 -134119103 - L2 LINE L2 -1 3312 3190 2302 97 3 0 chrX 28481399 28481708 -134118222 + AluSq SINE Alu 1 310 -3 4759 109 1 1 chrX 28481708 28482393 -134117537 + L1PA15 LINE L1 5481 6165 0 272 270 251 42 chrX 28482767 28482835 -134117095 + MIR SINE MIR 3 55 -207 1251 136 0 114 chrX 28482835 28483099 -134116831 + MER46A DNA MER2_type 1 234 -2 272 270 251 42 chrX 28483099 28483245 -134116685 + MIR SINE MIR 55 262 0 332 281 26 9 chrX 28483390 28483504 -134116426 + MIR SINE MIR 92 207 -55 25 51 0 0 chrX 28483525 28483564 -134116366 + AT_rich Low_complexity Low_complexity 1 39 0 190 268 0 18 chrX 28483673 28483729 -134116201 - MIR SINE MIR -46 216 162 221 394 16 16 chrX 28484092 28484219 -134115711 - L3b LINE CR1 -346 1237 1111 2312 97 0 0 chrX 28484561 28484861 -134115069 - AluSx SINE Alu -12 300 1 494 325 104 67 chrX 28485074 28485613 -134114317 + L2 LINE L2 2182 2740 -574 244 313 218 28 chrX 28485685 28485896 -134114034 - MIR SINE MIR -11 251 1 269 354 0 0 chrX 28485993 28486075 -134113855 + L2 LINE L2 2928 3009 -263 238 360 0 72 chrX 28486275 28486386 -134113544 + L2 LINE L2 3082 3184 -88 313 234 43 60 chrX 28486405 28486442 -134113488 + MER112 DNA MER1_type 42 78 -182 282 73 0 0 chrX 28486442 28486483 -134113447 + (CA)n Simple_repeat Simple_repeat 2 42 0 313 234 43 60 chrX 28486483 28486629 -134113301 + MER112 DNA MER1_type 78 222 -38 807 142 111 42 chrX 28486664 28486854 -134113076 + MLT1A2 LTR MaLR 124 326 -48 229 273 76 0 chrX 28486911 28486977 -134112953 + L2 LINE L2 3201 3271 -1 330 216 0 0 chrX 28486994 28487068 -134112862 + (TA)n Simple_repeat Simple_repeat 1 74 0 2199 58 7 4 chrX 28487398 28487705 -134112225 - AluSc SINE Alu 0 312 5 252 222 0 0 chrX 28489618 28489672 -134110258 + MLT1J1 LTR MaLR 345 398 -48 2184 102 0 0 chrX 28490126 28490432 -134109498 - AluSx SINE Alu 0 306 1 33 0 0 0 chrX 28490477 28490510 -134109420 + AT_rich Low_complexity Low_complexity 1 33 0 291 235 130 52 chrX 28492750 28492865 -134107065 + MIR SINE MIR 19 142 -66 243 0 0 0 chrX 28493063 28493090 -134106840 + (TA)n Simple_repeat Simple_repeat 2 28 0 275 271 0 0 chrX 28493906 28493976 -134105954 + MER116 DNA Mariner 3 72 -8 850 199 94 0 chrX 28495185 28495356 -134104574 + MER5A DNA MER1_type 1 187 -2 1449 217 6 97 chrX 28495401 28495875 -134104055 + LTR16A LTR ERVL 14 444 -6 337 280 10 10 chrX 28497991 28498091 -134101839 - MIR SINE MIR -64 144 45 24 0 0 0 chrX 28498693 28498717 -134101213 + AT_rich Low_complexity Low_complexity 1 24 0 1600 130 46 0 chrX 28499932 28500194 -134099736 + L1PA13 LINE L1 5326 5599 -569 2208 97 6 3 chrX 28500194 28500506 -134099424 + L1PA13 LINE L1 5840 6160 -3 206 308 0 13 chrX 28500635 28500713 -134099217 - MIR SINE MIR -95 167 91 25 51 0 0 chrX 28501873 28501912 -134098018 + AT_rich Low_complexity Low_complexity 1 39 0 927 339 39 6 chrX 28502414 28502777 -134097153 - L3 LINE CR1 -804 773 399 2246 244 80 32 chrX 28503333 28504047 -134095883 + MER20B DNA MER1_type 34 781 -2 2311 77 0 10 chrX 28505371 28505671 -134094259 + AluSg1 SINE Alu 4 300 -9 188 316 88 0 chrX 28508018 28508075 -134091855 + L2 LINE L2 3229 3290 -23 237 330 54 0 chrX 28508508 28508620 -134091310 + MIR SINE MIR 18 135 -73 220 347 80 0 chrX 28509787 28509862 -134090068 - L2 LINE L2 -4 3268 3188 362 268 163 0 chrX 28510197 28510320 -134089610 - L3 LINE CR1 -96 1481 1339 307 0 47 0 chrX 28510389 28510432 -134089498 + (TG)n Simple_repeat Simple_repeat 2 46 0 723 251 26 37 chrX 28510518 28510709 -134089221 - MER5A DNA MER1_type 0 189 1 752 313 53 32 chrX 28510745 28511125 -134088805 + LTR16A LTR ERVL 57 444 -6 930 283 54 7 chrX 28511153 28511429 -134088501 - L3 LINE CR1 -730 847 559 414 0 0 0 chrX 28512767 28512813 -134087117 + (A)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chrX 28513057 28513079 -134086851 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 28513241 28513263 -134086667 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chrX 28513329 28513366 -134086564 + AT_rich Low_complexity Low_complexity 1 37 0 405 0 0 0 chrX 28513577 28513622 -134086308 + (A)n Simple_repeat Simple_repeat 1 45 0 603 107 0 0 chrX 28514539 28514623 -134085307 - AluSg/x SINE Alu -15 294 211 22 0 0 0 chrX 28514909 28514931 -134084999 + AT_rich Low_complexity Low_complexity 1 22 0 1309 154 50 75 chrX 28514931 28515210 -134084720 - AluJo SINE Alu -30 282 11 381 280 98 64 chrX 28515313 28515549 -134084381 - MARNA DNA Mariner -196 390 147 330 338 113 54 chrX 28515915 28516394 -134083536 - L2 LINE L2 -697 2617 2111 2334 258 87 27 chrX 28516435 28517460 -134082470 + L2 LINE L2 2230 3313 0 242 273 0 0 chrX 28517491 28517546 -134082384 - MIR SINE MIR -14 248 194 388 370 82 23 chrX 28517569 28518047 -134081883 - L2 LINE L2 -1273 2041 1536 195 301 0 0 chrX 28518283 28518356 -134081574 + (TA)n Simple_repeat Simple_repeat 2 74 0 2683 88 0 8 chrX 28519505 28519889 -134080041 + L1PA13 LINE L1 5783 6163 0 920 70 86 0 chrX 28520052 28520180 -134079750 + MER85 DNA T2_type 1 139 0 831 194 129 5 chrX 28520283 28520484 -134079446 + MSTD-int LTR MaLR 1510 1735 0 1649 165 113 22 chrX 28520484 28520847 -134079083 + MSTD LTR MaLR 1 396 0 391 335 99 17 chrX 28520872 28521105 -134078825 - L2 LINE L2 -925 2389 2138 382 286 60 38 chrX 28522190 28522375 -134077555 - L2 LINE L2 -6 3307 3119 326 296 0 0 chrX 28524154 28524252 -134075678 + L1ME LINE L1 5571 5668 -453 2440 87 0 0 chrX 28524316 28524625 -134075305 + AluSg1 SINE Alu 1 309 0 30 59 0 0 chrX 28525646 28525697 -134074233 + AT_rich Low_complexity Low_complexity 1 51 0 430 144 156 0 chrX 28525784 28525874 -134074056 + L1MA10 LINE L1 6227 6330 -4 339 85 0 0 chrX 28526665 28526712 -134073218 + (TG)n Simple_repeat Simple_repeat 2 48 0 556 353 35 0 chrX 28527007 28527239 -134072691 + MIR SINE MIR 13 252 -10 222 62 0 0 chrX 28527240 28527272 -134072658 + (CAT)n Simple_repeat Simple_repeat 2 33 0 250 225 28 28 chrX 28527652 28527723 -134072207 + MIR SINE MIR 81 151 -57 1214 235 69 78 chrX 28527930 28528420 -134071510 + LTR33A LTR ERVL 7 492 -31 323 336 107 27 chrX 28528617 28528915 -134071015 + L2 LINE L2 1576 1897 -1417 519 269 107 81 chrX 28528915 28529213 -134070717 + MLT1H LTR MaLR 1 306 -243 238 364 134 5 chrX 28529343 28529552 -134070378 + L2 LINE L2 1914 2149 -1165 21 0 0 0 chrX 28529622 28529643 -134070287 + AT_rich Low_complexity Low_complexity 1 21 0 492 403 24 10 chrX 28529659 28529957 -134069973 + L2 LINE L2 2560 2861 -453 462 352 0 14 chrX 28529964 28530109 -134069821 - MIR3 SINE MIR -56 152 10 660 260 224 18 chrX 28531137 28531476 -134068454 + MLT1I LTR MaLR 1 409 0 3345 199 59 28 chrX 28531920 28532454 -134067476 - L1MB7 LINE L1 -23 6659 6143 1683 105 37 59 chrX 28532454 28532778 -134067152 + L1MA3 LINE L1 5989 6305 0 3345 199 59 28 chrX 28532778 28533374 -134066556 - L1MB7 LINE L1 -539 6143 5492 32 67 0 0 chrX 28533374 28533434 -134066496 + AT_rich Low_complexity Low_complexity 1 60 0 5861 130 20 11 chrX 28533434 28534423 -134065507 - L1MA7 LINE L1 0 6291 5294 5675 211 62 23 chrX 28534420 28535419 -134064511 - L1MB7 LINE L1 -1140 5504 4546 * 946 258 83 40 chrX 28535419 28535865 -134064065 - MLT1C LTR MaLR 0 467 3 2316 90 0 0 chrX 28535869 28536169 -134063761 - AluY SINE Alu -11 300 1 5675 211 62 23 chrX 28536169 28537533 -134062397 - L1MB7 LINE L1 -2100 4544 2974 708 208 58 10 chrX 28537530 28537737 -134062193 - L1MB7 LINE L1 -5072 1470 1254 * 1518 265 42 49 chrX 28537733 28538281 -134061649 - L1MB7 LINE L1 -5905 637 94 1946 154 20 0 chrX 28538289 28538595 -134061335 + AluSx SINE Alu 1 312 0 24 0 0 0 chrX 28538749 28538773 -134061157 + AT_rich Low_complexity Low_complexity 1 24 0 2325 81 0 0 chrX 28540333 28540618 -134059312 - AluSg SINE Alu -25 285 1 22 70 0 0 chrX 28540690 28540733 -134059197 + AT_rich Low_complexity Low_complexity 1 43 0 545 320 89 5 chrX 28541606 28541809 -134058121 + MIR SINE MIR 43 262 0 611 293 104 47 chrX 28542842 28543159 -134056771 + MLT1J2 LTR MaLR 113 447 -3 1416 156 92 50 chrX 28543906 28544188 -134055742 + AluJo SINE Alu 1 294 -18 640 211 124 55 chrX 28545933 28546151 -134053779 + MIR SINE MIR 30 262 0 385 324 14 22 chrX 28546388 28546527 -134053403 - MIR SINE MIR -98 164 27 506 322 50 6 chrX 28546745 28546925 -134053005 + MIR SINE MIR 75 262 0 284 298 73 116 chrX 28547566 28547895 -134052035 - L2 LINE L2 -1 3271 2957 414 0 0 0 chrX 28547964 28548010 -134051920 + (TG)n Simple_repeat Simple_repeat 2 47 0 2101 109 3 7 chrX 28548578 28548871 -134051059 - AluSx SINE Alu -20 292 1 755 179 30 36 chrX 28549047 28549215 -134050715 - Looper DNA T2_type 0 1558 1392 2222 85 3 7 chrX 28549215 28549497 -134050433 + AluSq SINE Alu 1 281 -32 211 28 56 0 chrX 28549498 28549534 -134050396 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1292 191 28 3 chrX 28549536 28549818 -134050112 - Looper DNA T2_type -588 970 682 1390 273 46 37 chrX 28549987 28550442 -134049488 + LTR16C LTR ERVL 33 491 0 2252 98 6 22 chrX 28550456 28550772 -134049158 - AluSq SINE Alu -2 311 1 991 286 110 18 chrX 28551405 28551797 -134048133 - LTR33 LTR ERVL -93 428 1 2064 94 47 0 chrX 28551908 28552184 -134047746 + AluSg SINE Alu 1 289 -21 24 32 0 0 chrX 28553240 28553271 -134046659 + AT_rich Low_complexity Low_complexity 1 31 0 317 379 61 29 chrX 28553350 28553907 -134046023 - L2 LINE L2 -20 3252 1954 658 241 36 91 chrX 28553925 28554178 -134045752 - MIR SINE MIR 0 262 24 248 276 55 79 chrX 28554187 28554314 -134045616 - L2 LINE L2 -1387 1927 1804 284 341 87 61 chrX 28554604 28554692 -134045238 + MLT1K LTR MaLR 184 268 -320 180 0 0 0 chrX 28554692 28554712 -134045218 + (TTG)n Simple_repeat Simple_repeat 2 21 0 284 341 87 61 chrX 28554712 28555016 -134044914 + MLT1K LTR MaLR 268 586 -2 892 260 78 72 chrX 28555708 28556193 -134043737 + LTR16C LTR ERVL 1 488 -3 21 57 0 0 chrX 28556247 28556282 -134043648 + AT_rich Low_complexity Low_complexity 1 35 0 219 369 0 0 chrX 28556283 28556348 -134043582 + L2 LINE L2 3245 3309 -4 5137 199 20 3 chrX 28556884 28557825 -134042105 + L1MA2 LINE L1 567 1523 -6042 2218 98 21 0 chrX 28557817 28558154 -134041776 - L1M1 LINE L1 -4749 2816 2473 * 458 99 0 12 chrX 28558154 28558235 -134041695 + L1MA2 LINE L1 2405 2484 -5081 18133 37 2 0 chrX 28558236 28561225 -134038705 + L1PA5 LINE L1 3161 6152 -2 14416 185 32 15 chrX 28561292 28564714 -134035216 + L1MA2 LINE L1 3305 6833 -890 354 98 0 0 chrX 28564714 28564765 -134035165 + (TA)n Simple_repeat Simple_repeat 2 52 0 14416 185 32 15 chrX 28564765 28565672 -134034258 + L1MA2 LINE L1 6833 7723 0 21 0 0 0 chrX 28565672 28565693 -134034237 + AT_rich Low_complexity Low_complexity 1 21 0 2304 180 11 7 chrX 28565698 28566137 -134033793 + L1MA6 LINE L1 5824 6264 -36 22 35 0 0 chrX 28566158 28566187 -134033743 + AT_rich Low_complexity Low_complexity 1 29 0 1506 231 22 66 chrX 28566192 28566691 -134033239 + L1ME3A LINE L1 5626 6102 -68 434 86 0 0 chrX 28566687 28566745 -134033185 - L1P LINE L1 -1194 4952 4895 * 185 315 22 11 chrX 28568018 28568107 -134031823 + MIR SINE MIR 119 208 -54 25 0 0 0 chrX 28569036 28569061 -134030869 + AT_rich Low_complexity Low_complexity 1 25 0 251 325 51 0 chrX 28569125 28569242 -134030688 + MIR SINE MIR 123 245 -17 223 312 21 54 chrX 28569288 28569381 -134030549 + MIR3 SINE MIR 108 197 -11 268 327 9 9 chrX 28569629 28569739 -134030191 + L1ME2 LINE L1 6045 6154 -10 311 291 107 5 chrX 28569785 28569981 -134029949 + L1MC4 LINE L1 7826 8041 -1 2286 102 0 0 chrX 28570002 28570297 -134029633 + AluSg SINE Alu 1 295 -15 597 200 18 0 chrX 28571831 28571941 -134027989 + MER5A DNA MER1_type 1 112 -77 566 324 153 48 chrX 28571988 28572717 -134027213 + L2 LINE L2 1791 2443 -871 685 250 23 11 chrX 28572717 28572893 -134027037 - MER5B DNA MER1_type 0 178 1 566 324 153 48 chrX 28572893 28572951 -134026979 + L2 LINE L2 2443 2494 -820 1764 127 0 4 chrX 28572951 28573204 -134026726 - AluSx SINE Alu -12 300 49 566 324 153 48 chrX 28573204 28573366 -134026564 + L2 LINE L2 2494 2840 -474 23 33 0 0 chrX 28574221 28574251 -134025679 + AT_rich Low_complexity Low_complexity 1 30 0 605 333 82 11 chrX 28575129 28575408 -134024522 - L2 LINE L2 -510 2804 2506 192 243 29 71 chrX 28575416 28575486 -134024444 + L2 LINE L2 3205 3271 -1 207 261 72 63 chrX 28575864 28575975 -134023955 - L2 LINE L2 -1006 2308 2197 1450 136 34 23 chrX 28577467 28577732 -134022198 + L1PA16 LINE L1 5899 6166 0 183 268 54 54 chrX 28578276 28578332 -134021598 + MER5A DNA MER1_type 59 114 -75 606 199 56 56 chrX 28578346 28578507 -134021423 + MER106A DNA MER1_type 1 161 -75 274 292 115 19 chrX 28578511 28578720 -134021210 - L1ME4a LINE L1 -67 6054 5826 210 167 0 56 chrX 28578947 28579001 -134020929 + CT-rich Low_complexity Low_complexity 2 52 0 1910 152 4 0 chrX 28579086 28579363 -134020567 + AluSx SINE Alu 1 278 -34 234 0 0 0 chrX 28579365 28579391 -134020539 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 225 0 0 0 chrX 28579652 28579677 -134020253 + (TC)n Simple_repeat Simple_repeat 1 25 0 305 24 24 0 chrX 28579677 28579719 -134020211 + (TG)n Simple_repeat Simple_repeat 2 44 0 262 314 9 19 chrX 28580105 28580210 -134019720 + MER5B DNA MER1_type 17 120 -58 23 0 0 0 chrX 28581553 28581576 -134018354 + AT_rich Low_complexity Low_complexity 1 23 0 193 315 176 28 chrX 28581887 28581995 -134017935 + MIR SINE MIR 17 140 -122 31 0 0 0 chrX 28582597 28582628 -134017302 + AT_rich Low_complexity Low_complexity 1 31 0 347 229 57 19 chrX 28583376 28583481 -134016449 - L2 LINE L2 -3 3310 3202 215 299 15 0 chrX 28583660 28583727 -134016203 + (TGAA)n Simple_repeat Simple_repeat 1 68 0 218 270 95 0 chrX 28583881 28583944 -134015986 + L2 LINE L2 3245 3313 0 24 0 0 0 chrX 28584376 28584400 -134015530 + AT_rich Low_complexity Low_complexity 1 24 0 2656 20 3 0 chrX 28585359 28585660 -134014270 + AluY SINE Alu 1 302 -9 2296 75 3 0 chrX 28586366 28586692 -134013238 + AluSp SINE Alu 1 327 0 291 157 0 0 chrX 28586923 28586974 -134012956 + (CA)n Simple_repeat Simple_repeat 2 52 0 368 321 103 12 chrX 28587059 28587224 -134012706 + MIR SINE MIR 32 211 -51 1435 185 72 70 chrX 28588523 28588896 -134011034 + MLT1A2 LTR MaLR 1 374 0 543 321 25 5 chrX 28588934 28589130 -134010800 - MIR SINE MIR -56 206 7 1274 256 53 18 chrX 28589838 28590178 -134009752 + MLT1F LTR MaLR 186 537 -5 2208 146 3 22 chrX 28591324 28591686 -134008244 + MLT2D LTR ERVL 3 357 -57 261 0 0 0 chrX 28591686 28591715 -134008215 + (TC)n Simple_repeat Simple_repeat 2 30 0 30 27 0 0 chrX 28591724 28591761 -134008169 + AT_rich Low_complexity Low_complexity 1 37 0 336 64 0 0 chrX 28591765 28591812 -134008118 + (TC)n Simple_repeat Simple_repeat 2 48 0 862 273 171 11 chrX 28592281 28592655 -134007275 + MLT1J1 LTR MaLR 13 446 0 291 311 104 18 chrX 28592873 28592956 -134006974 + MIR SINE MIR 8 82 -180 2463 14 0 11 chrX 28592956 28593238 -134006692 - AluY SINE Alu -32 279 1 291 311 104 18 chrX 28593238 28593318 -134006612 + MIR SINE MIR 82 185 -77 180 182 0 0 chrX 28593322 28593366 -134006564 + (CA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chrX 28593442 28593464 -134006466 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chrX 28595380 28595431 -134004499 + AT_rich Low_complexity Low_complexity 1 51 0 257 233 164 14 chrX 28596496 28596569 -134003361 - L2 LINE L2 0 3313 3230 180 347 19 42 chrX 28597500 28597716 -134002214 + L2 LINE L2 746 956 -2358 1658 209 25 93 chrX 28598957 28599525 -134000405 - L1MC4 LINE L1 -1 8041 7513 300 372 32 26 chrX 28599531 28599687 -134000243 - L2 LINE L2 -19 3253 3097 965 287 60 29 chrX 28599845 28600294 -133999636 + LTR16B LTR ERVL 2 464 0 795 243 6 23 chrX 28600804 28600981 -133998949 + MER45A DNA AcHobo 1 174 -4 210 356 152 8 chrX 28601472 28601604 -133998326 - L2 LINE L2 -4 3268 3118 756 313 29 0 chrX 28601694 28601934 -133997996 + MIR SINE MIR 6 252 -10 631 309 34 24 chrX 28601926 28602133 -133997797 - MIR SINE MIR -49 213 5 * 318 261 173 16 chrX 28602336 28602618 -133997312 - LTR33 LTR ERVL -149 372 3 21 0 0 0 chrX 28602622 28602643 -133997287 + AT_rich Low_complexity Low_complexity 1 21 0 4662 97 0 15 chrX 28603192 28603865 -133996065 + L1MA2 LINE L1 5354 6016 -288 2433 173 10 2 chrX 28604224 28604711 -133995219 + L1MA2 LINE L1 5814 6304 0 2004 88 0 4 chrX 28604988 28605302 -133994628 + L1PA8 LINE L1 5897 6172 0 14972 133 13 15 chrX 28605930 28608053 -133991877 - Tigger1 DNA MER2_type -1 2417 291 5463 134 17 3 chrX 28608053 28609327 -133990603 + L1PA16 LINE L1 4874 6160 -6 1559 181 0 36 chrX 28609329 28609638 -133990292 - AluJo SINE Alu -10 302 5 14972 133 13 15 chrX 28609638 28609933 -133989997 - Tigger1 DNA MER2_type -2128 290 1 184 188 0 0 chrX 28611911 28611943 -133987987 + MIR SINE MIR 119 150 -112 337 244 70 46 chrX 28614243 28614381 -133985549 - MIR SINE MIR -67 141 19 456 303 87 5 chrX 28614390 28614575 -133985355 - MIR SINE MIR -5 257 58 7722 16 0 0 chrX 28614591 28616035 -133983895 - L1PA3 LINE L1 0 6155 4738 5972 20 1 0 chrX 28616035 28616733 -133983197 + L1PA3 LINE L1 4055 4753 -1393 2403 162 42 23 chrX 28617243 28617719 -133982211 - MLT1D LTR MaLR 0 505 21 28 61 0 0 chrX 28619596 28619645 -133980285 + AT_rich Low_complexity Low_complexity 1 49 0 212 282 0 0 chrX 28619900 28619971 -133979959 + (CAGA)n Simple_repeat Simple_repeat 4 74 0 24 77 0 0 chrX 28620450 28620502 -133979428 + AT_rich Low_complexity Low_complexity 1 52 0 261 139 0 0 chrX 28621938 28621981 -133977949 + (CA)n Simple_repeat Simple_repeat 2 44 0 420 319 83 0 chrX 28622013 28622170 -133977760 + MIR SINE MIR 66 235 -27 1315 271 70 22 chrX 28622820 28622917 -133977013 + LTR16A LTR ERVL 12 103 -347 2020 156 37 0 chrX 28622917 28623269 -133976661 - MLT1A1 LTR MaLR 0 365 1 1315 271 70 22 chrX 28623269 28623573 -133976357 + LTR16A LTR ERVL 103 432 -18 22 56 0 0 chrX 28625116 28625152 -133974778 + AT_rich Low_complexity Low_complexity 1 36 0 226 289 99 0 chrX 28625469 28625611 -133974319 + MER103 DNA DNA 3 158 -8 768 225 35 63 chrX 28625761 28625821 -133974109 - L1MA10 LINE L1 -28 6306 6246 1901 135 19 61 chrX 28625821 28626184 -133973746 + MER7A DNA MER2_type 1 346 0 768 225 35 63 chrX 28626184 28626407 -133973523 - L1MA10 LINE L1 -88 6246 6031 453 33 0 0 chrX 28626417 28626477 -133973453 - AluY SINE Alu -10 301 242 1556 55 0 0 chrX 28626477 28626659 -133973271 - AluY SINE Alu -129 182 1 2331 86 13 0 chrX 28627764 28628068 -133971862 + AluSc SINE Alu 2 309 0 2302 100 0 3 chrX 28628756 28629066 -133970864 + AluSg SINE Alu 1 309 -1 23 0 0 0 chrX 28629322 28629345 -133970585 + AT_rich Low_complexity Low_complexity 1 23 0 1409 209 40 20 chrX 28629346 28629642 -133970288 - AluJo SINE Alu -8 304 3 2374 72 3 0 chrX 28631739 28632032 -133967898 - AluSp SINE Alu -19 294 1 261 0 0 0 chrX 28632348 28632377 -133967553 + (TG)n Simple_repeat Simple_repeat 2 30 0 1416 90 66 5 chrX 28633336 28633548 -133966382 + MER30 DNA MER1_type 6 230 0 233 222 0 32 chrX 28633998 28634061 -133965869 + LTR67 LTR ERVL 495 555 -2 387 336 61 38 chrX 28634067 28634418 -133965512 + L2 LINE L2 2701 3058 -214 495 260 238 0 chrX 28634503 28634684 -133965246 + MIR SINE MIR 18 241 -21 206 178 50 30 chrX 28635187 28635288 -133964642 + (TA)n Simple_repeat Simple_repeat 2 104 0 1958 150 7 0 chrX 28635335 28635628 -133964302 - AluSx SINE Alu -17 295 1 758 295 39 27 chrX 28635975 28636233 -133963697 - MIR SINE MIR -1 261 1 329 284 158 16 chrX 28636477 28636604 -133963326 + MIR SINE MIR 9 153 -109 198 247 247 0 chrX 28636730 28636807 -133963123 - MIR SINE MIR -72 136 41 180 0 0 0 chrX 28637552 28637572 -133962358 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chrX 28638387 28638416 -133961514 + AT_rich Low_complexity Low_complexity 1 29 0 340 282 40 32 chrX 28638765 28638889 -133961041 + MIR SINE MIR 12 136 -126 217 307 11 11 chrX 28638950 28639038 -133960892 + MIR SINE MIR 136 223 -39 213 191 21 21 chrX 28639079 28639126 -133960804 + MIR SINE MIR 216 262 0 299 25 25 0 chrX 28640418 28640458 -133959472 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 1365 50 0 0 chrX 28640487 28640692 -133959238 + (G)n Simple_repeat Simple_repeat 1 205 0 241 313 12 0 chrX 28641948 28642028 -133957902 + CT-rich Low_complexity Low_complexity 2 82 0 323 248 6 25 chrX 28642047 28642204 -133957726 + CT-rich Low_complexity Low_complexity 3 156 0 275 157 0 0 chrX 28643167 28643218 -133956712 + MER30B DNA MER1_type 10 60 -130 241 121 15 15 chrX 28643538 28643604 -133956326 + GA-rich Low_complexity Low_complexity 3 68 0 267 275 38 12 chrX 28643869 28643949 -133955981 + L2 LINE L2 3209 3290 -23 519 255 7 55 chrX 28644315 28644460 -133955470 + MIR SINE MIR 32 169 -93 187 289 58 29 chrX 28644564 28644668 -133955262 + MIR SINE MIR 106 212 -50 4581 161 14 6 chrX 28645434 28646291 -133953639 - L1MA8 LINE L1 -102 6189 5326 30 45 0 0 chrX 28646337 28646381 -133953549 + AT_rich Low_complexity Low_complexity 1 44 0 353 266 28 0 chrX 28646502 28646611 -133953319 - L1ME LINE L1 -420 5701 5590 1795 267 67 27 chrX 28646701 28647577 -133952353 - L1ME3A LINE L1 -79 6160 5222 1088 224 5 0 chrX 28649132 28649346 -133950584 - MER58A DNA MER1_type -9 215 1 2018 115 0 0 chrX 28650220 28650481 -133949449 + AluSx SINE Alu 26 286 -26 21 57 0 0 chrX 28651270 28651305 -133948625 + AT_rich Low_complexity Low_complexity 1 35 0 429 295 133 63 chrX 28651776 28652378 -133947552 - L1MEc LINE L1 -3528 2687 2094 1900 76 0 0 chrX 28652473 28652709 -133947221 - AluY SINE Alu -75 236 1 23 0 0 0 chrX 28652815 28652838 -133947092 + GC_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrX 28652873 28652915 -133947015 + GC_rich Low_complexity Low_complexity 1 42 0 285 379 6 22 chrX 28653357 28653539 -133946391 + G-rich Low_complexity Low_complexity 2 180 0 382 313 99 21 chrX 28655115 28655348 -133944582 - L2 LINE L2 -6 3307 3057 2267 104 50 19 chrX 28655736 28656100 -133943830 - THE1C LTR MaLR 0 375 1 9402 112 63 9 chrX 28656100 28657598 -133942332 - THE1C-int LTR MaLR 0 1580 1 2176 113 50 19 chrX 28657598 28657962 -133941968 - THE1C LTR MaLR 0 375 1 1368 146 41 37 chrX 28657962 28658256 -133941674 + L1MA9 LINE L1 6013 6307 -5 400 333 40 94 chrX 28658275 28658770 -133941160 - L2 LINE L2 -98 3174 2699 249 299 55 16 chrX 28658827 28658954 -133940976 + MER94 DNA DNA 3 134 0 389 299 114 32 chrX 28658955 28659296 -133940634 - L2 LINE L2 -684 2630 2262 320 295 43 22 chrX 28659354 28659493 -133940437 - LTR16C LTR ERVL -8 483 342 339 370 25 35 chrX 28659900 28660103 -133939827 - L1ME3A LINE L1 -7 6163 5963 420 208 0 0 chrX 28660116 28660212 -133939718 + CT-rich Low_complexity Low_complexity 1 96 0 2420 77 3 0 chrX 28660212 28660510 -133939420 - AluSp SINE Alu -14 299 1 687 334 94 29 chrX 28661104 28661331 -133938599 + L2 LINE L2 2364 2575 -697 4089 141 35 3 chrX 28661331 28662007 -133937923 - L1PA16 LINE L1 -9 6157 5460 687 334 94 29 chrX 28662007 28662432 -133937498 + L2 LINE L2 2575 3055 -217 531 309 39 17 chrX 28663233 28663414 -133936516 - MIR SINE MIR -8 254 70 1025 162 158 0 chrX 28663528 28663756 -133936174 + MER21A LTR ERV1 1 264 -667 2854 141 34 54 chrX 28663761 28664088 -133935842 + MER21A LTR ERV1 376 689 -242 285 98 0 0 chrX 28664088 28664129 -133935801 + (TG)n Simple_repeat Simple_repeat 1 41 0 2854 141 34 54 chrX 28664129 28664361 -133935569 + MER21A LTR ERV1 689 924 -7 436 203 16 55 chrX 28664628 28664756 -133935174 + MER94 DNA DNA 1 123 -11 251 276 0 0 chrX 28664983 28665041 -133934889 + L2 LINE L2 3254 3311 -2 2321 113 0 0 chrX 28665187 28665488 -133934442 - AluSc SINE Alu -8 301 1 181 367 0 0 chrX 28666892 28666941 -133932989 + MIR SINE MIR 81 129 -79 2406 101 0 0 chrX 28667182 28667489 -133932441 + AluSx SINE Alu 1 307 -5 23 0 0 0 chrX 28667495 28667518 -133932412 + AT_rich Low_complexity Low_complexity 1 23 0 2340 101 0 3 chrX 28667987 28668295 -133931635 + AluSg SINE Alu 1 307 -3 331 331 25 32 chrX 28669674 28669831 -133930099 + L2 LINE L2 2854 3009 -304 706 275 73 68 chrX 28669857 28670283 -133929647 - MLT1J2 LTR MaLR -21 429 2 603 229 92 82 chrX 28670284 28670576 -133929354 + L2 LINE L2 3011 3305 -8 478 246 75 30 chrX 28670946 28671080 -133928850 - MIR SINE MIR -74 188 49 201 39 0 0 chrX 28671609 28671635 -133928295 + (CA)n Simple_repeat Simple_repeat 2 27 0 315 325 113 29 chrX 28674162 28674543 -133925387 + L1ME4a LINE L1 5483 5895 -226 598 121 0 0 chrX 28675996 28676087 -133923843 + L1MA1 LINE L1 6212 6302 0 191 430 63 6 chrX 28676421 28676579 -133923351 + L2 LINE L2 3096 3262 -10 1049 262 91 3 chrX 28676614 28677004 -133922926 + L1ME3A LINE L1 5725 6165 -5 304 251 81 11 chrX 28677283 28677377 -133922553 + MLT1H1 LTR MaLR 414 502 -53 1036 177 9 78 chrX 28677484 28677716 -133922214 + MER20 DNA MER1_type 4 219 0 1978 134 0 10 chrX 28677746 28677766 -133922164 - AluSx SINE Alu -9 303 284 372 43 0 0 chrX 28677766 28677812 -133922118 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1978 134 0 10 chrX 28677812 28678097 -133921833 - AluSx SINE Alu -28 284 1 341 280 19 0 chrX 28678659 28678766 -133921164 + (TA)n Simple_repeat Simple_repeat 2 110 0 220 336 69 9 chrX 28679305 28679421 -133920509 - MIR SINE MIR -6 256 134 187 416 0 0 chrX 28679577 28679654 -133920276 - L2 LINE L2 -8 3264 3188 619 255 46 10 chrX 28679843 28680039 -133919891 + MER3 DNA MER1_type 1 203 -6 694 280 24 60 chrX 28680153 28680403 -133919527 + MIR SINE MIR 17 257 -5 29 28 0 0 chrX 28681484 28681520 -133918410 + AT_rich Low_complexity Low_complexity 1 36 0 542 250 23 17 chrX 28681558 28681730 -133918200 - L1M4 LINE L1 -1218 4928 4756 282 173 93 0 chrX 28681737 28681812 -133918118 - L1MB7 LINE L1 0 6184 6103 378 249 79 68 chrX 28681821 28681936 -133917994 - L1MB3 LINE L1 -1 6182 6070 2303 83 3 3 chrX 28681936 28682237 -133917693 - AluSx SINE Alu -11 301 1 378 249 79 68 chrX 28682237 28682386 -133917544 - L1MB3 LINE L1 -113 6070 5915 3331 66 2 7 chrX 28682505 28682946 -133916984 + L1PA6 LINE L1 5701 6139 -15 382 287 35 0 chrX 28683099 28683214 -133916716 - LTR16C LTR ERVL -372 119 1 268 269 68 78 chrX 28683525 28683744 -133916186 + MLT1K LTR MaLR 200 416 -172 201 94 0 0 chrX 28683750 28683782 -133916148 + (A)n Simple_repeat Simple_repeat 1 32 0 226 295 16 0 chrX 28684603 28684664 -133915266 + MIR SINE MIR 201 262 0 307 287 126 42 chrX 28685546 28685614 -133914316 - MIR SINE MIR -1 261 200 9420 100 4 2 chrX 28685614 28686898 -133913032 + HSMAR1 DNA Mariner 1 1287 0 307 287 126 42 chrX 28686898 28686972 -133912958 - MIR SINE MIR -62 200 107 815 224 63 83 chrX 28686992 28687359 -133912571 + MLT1G1 LTR MaLR 1 417 -178 344 253 22 0 chrX 28687401 28687492 -133912438 + MLT1G1 LTR MaLR 463 555 0 369 16 0 49 chrX 28687950 28688011 -133911919 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 5449 97 11 5 chrX 28688468 28689270 -133910660 + L1MA2 LINE L1 5498 6304 0 308 293 171 0 chrX 28689736 28689876 -133910054 + L2 LINE L2 3150 3313 0 1589 244 133 11 chrX 28690112 28690554 -133909376 + MLT1H LTR MaLR 41 536 -13 611 260 25 5 chrX 28690855 28691009 -133908921 - LTR33A LTR ERVL -300 221 65 322 237 200 30 chrX 28691339 28691455 -133908475 + MER5A DNA MER1_type 26 169 -20 4236 193 24 3 chrX 28691455 28692303 -133907627 - MER6 DNA MER2_type 0 865 1 322 237 200 30 chrX 28692303 28692321 -133907609 + MER5A DNA MER1_type 169 183 -6 248 326 18 13 chrX 28692502 28692629 -133907301 - MIR SINE MIR -71 137 20 2175 115 3 6 chrX 28692855 28693168 -133906762 - AluSx SINE Alu 0 312 1 348 335 11 7 chrX 28695707 28695872 -133904058 + Tigger1 DNA MER2_type 967 1110 -1308 234 128 0 0 chrX 28696749 28696788 -133903142 + (CA)n Simple_repeat Simple_repeat 1 39 0 948 171 5 31 chrX 28697107 28697300 -133902630 + L1MA7 LINE L1 5886 6073 -218 248 351 52 47 chrX 28697588 28697779 -133902151 + MIR SINE MIR 1 192 -70 310 244 58 0 chrX 28697926 28698012 -133901918 - MIR SINE MIR -90 172 82 266 372 31 16 chrX 28698855 28698984 -133900946 + L2 LINE L2 3136 3266 -6 919 323 116 64 chrX 28699824 28701010 -133898920 + L2 LINE L2 1657 2904 -410 300 290 47 37 chrX 28701493 28701600 -133898330 + L2 LINE L2 3146 3253 -19 245 264 14 28 chrX 28701972 28702044 -133897886 + L2 LINE L2 3201 3271 -1 615 247 63 6 chrX 28703122 28703296 -133896634 - MER115 DNA AcHobo -1 692 509 812 76 21 14 chrX 28703296 28703440 -133896490 + (TTTC)n Simple_repeat Simple_repeat 3 147 0 2316 164 34 11 chrX 28703625 28704071 -133895859 - L1MB1 LINE L1 -1 6167 5712 284 315 159 41 chrX 28704077 28704384 -133895546 - MER115 DNA AcHobo -261 432 12 435 176 10 0 chrX 28704539 28704641 -133895289 + L1MA4 LINE L1 6196 6298 -2 368 320 128 53 chrX 28705595 28706010 -133893920 + MLT1K LTR MaLR 137 582 -6 341 321 46 0 chrX 28706068 28706177 -133893753 + MIR SINE MIR 3 116 -146 316 303 90 8 chrX 28706276 28706398 -133893532 - MIR SINE MIR -59 203 72 486 258 8 38 chrX 28706447 28706579 -133893351 + L2 LINE L2 3184 3311 -2 204 327 58 0 chrX 28706582 28706634 -133893296 - L2 LINE L2 -100 3172 3118 183 321 25 49 chrX 28707538 28707619 -133892311 + L2 LINE L2 1346 1424 -1890 193 318 27 31 chrX 28707865 28707985 -133891945 + MIR SINE MIR 36 153 -55 273 317 192 56 chrX 28708340 28709091 -133890839 + L2 LINE L2 1890 2742 -572 313 321 0 0 chrX 28709093 28709177 -133890753 + L2 LINE L2 3188 3271 -1 248 158 18 0 chrX 28709783 28709840 -133890090 + CT-rich Low_complexity Low_complexity 1 58 0 462 79 0 0 chrX 28709840 28709903 -133890027 + (TG)n Simple_repeat Simple_repeat 2 64 0 712 264 183 66 chrX 28709940 28710334 -133889596 + MLT1J2 LTR MaLR 1 440 -10 892 212 39 10 chrX 28711524 28711727 -133888203 + MER3 DNA MER1_type 1 209 0 213 154 0 0 chrX 28712220 28712259 -133887671 + (ATG)n Simple_repeat Simple_repeat 1 39 0 525 292 188 0 chrX 28712274 28712476 -133887454 - MIR SINE MIR -21 241 2 1952 141 3 7 chrX 28712539 28712844 -133887086 - AluSq SINE Alu -9 304 1 2653 128 59 15 chrX 28712945 28713420 -133886510 - L1PA16 LINE L1 0 6166 5671 21 0 0 0 chrX 28713519 28713540 -133886390 + AT_rich Low_complexity Low_complexity 1 21 0 188 305 85 25 chrX 28713783 28713901 -133886029 - MIR SINE MIR -72 190 66 2315 92 0 7 chrX 28713916 28714221 -133885709 + AluSc SINE Alu 1 303 -6 1487 181 42 0 chrX 28715185 28715494 -133884436 - MER33 DNA MER1_type -2 322 1 446 250 176 17 chrX 28715719 28716015 -133883915 - L1ME3A LINE L1 -219 5951 5609 1415 197 90 32 chrX 28716304 28716649 -133883281 - MLT1B LTR MaLR -25 365 1 268 356 144 0 chrX 28718952 28719070 -133880860 + L2 LINE L2 3138 3272 0 233 289 155 21 chrX 28720219 28720316 -133879614 - L2 LINE L2 -5 3308 3199 714 186 73 40 chrX 28721470 28721647 -133878283 + MER5A DNA MER1_type 2 184 -5 * 757 269 11 6 chrX 28721638 28721813 -133878117 + MER5A DNA MER1_type 8 183 -6 730 246 11 11 chrX 28721829 28722004 -133877926 + MER5B DNA MER1_type 4 178 0 354 268 184 18 chrX 28722353 28722521 -133877409 - MIR SINE MIR 0 262 67 270 295 57 33 chrX 28723433 28723555 -133876375 - L2 LINE L2 -2 3311 3187 2300 111 7 0 chrX 28723661 28723968 -133875962 + AluSg SINE Alu 1 309 -1 219 407 0 0 chrX 28723992 28724100 -133875830 - L2 LINE L2 -216 3056 2949 365 300 9 9 chrX 28724196 28724306 -133875624 - MER94 DNA DNA -5 129 20 200 375 80 40 chrX 28724872 28725096 -133874834 - L2 LINE L2 -642 2672 2440 787 295 36 65 chrX 28725167 28725614 -133874316 - LTR33A LTR ERVL -32 491 58 1015 221 14 5 chrX 28726569 28726786 -133873144 + MER63B DNA MER1_type 1 219 -217 428 279 88 72 chrX 28726895 28727146 -133872784 - MIR SINE MIR -5 257 3 428 366 58 0 chrX 28728552 28728724 -133871206 + MIR SINE MIR 81 262 0 1216 231 116 31 chrX 28729538 28729797 -133870133 - MLT1C LTR MaLR -7 460 224 252 0 0 0 chrX 28729797 28729825 -133870105 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3694 30 0 5 chrX 28729825 28730263 -133869667 - L1PA3 LINE L1 -18 6137 5702 1216 231 116 31 chrX 28730263 28730426 -133869504 - MLT1C LTR MaLR -242 225 1 370 295 115 38 chrX 28732830 28733013 -133866917 + MIR SINE MIR 5 201 -61 239 359 69 30 chrX 28733793 28733924 -133866006 - MIR3 SINE MIR -21 187 52 1046 202 10 10 chrX 28735756 28735959 -133863971 - L1ME1 LINE L1 0 6166 5964 777 161 0 0 chrX 28736204 28736334 -133863596 + MER3 DNA MER1_type 80 209 0 686 211 0 108 chrX 28739554 28739739 -133860191 - MER5B DNA MER1_type -3 175 11 353 210 50 0 chrX 28741587 28741687 -133858243 - L1ME4a LINE L1 -2 6119 6015 28 0 0 0 chrX 28744511 28744539 -133855391 + AT_rich Low_complexity Low_complexity 1 28 0 444 301 169 41 chrX 28744859 28745178 -133854752 + L2 LINE L2 2949 3308 -5 938 181 5 11 chrX 28747055 28747243 -133852687 + L1PA16 LINE L1 5978 6164 -2 26 30 0 0 chrX 28747286 28747319 -133852611 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 28747627 28747648 -133852282 + AT_rich Low_complexity Low_complexity 1 21 0 1772 217 20 72 chrX 28747737 28748226 -133851704 + MLT2B1 LTR ERVL 1 464 -56 239 53 0 26 chrX 28748236 28748274 -133851656 + (GA)n Simple_repeat Simple_repeat 1 37 0 226 216 20 0 chrX 28748382 28748433 -133851497 + L1MA6 LINE L1 6025 6076 -224 2490 71 0 7 chrX 28748543 28748853 -133851077 - AluY SINE Alu -3 308 1 3198 117 20 0 chrX 28748974 28749462 -133850468 - L1MA6 LINE L1 -422 5878 5381 1733 202 14 3 chrX 28749459 28749806 -133850124 + L1MA6 LINE L1 5868 6218 -82 * 225 138 75 0 chrX 28749969 28750049 -133849881 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 2395 91 3 0 chrX 28750334 28750642 -133849288 + AluSc SINE Alu 1 309 0 38 68 0 0 chrX 28750739 28750812 -133849118 + AT_rich Low_complexity Low_complexity 1 73 0 291 251 146 5 chrX 28750866 28750970 -133848960 - L1ME1 LINE L1 -351 5770 5656 248 342 8 58 chrX 28750971 28751091 -133848839 + L2 LINE L2 2849 2962 -310 29 28 0 0 chrX 28754274 28754310 -133845620 + AT_rich Low_complexity Low_complexity 1 36 0 204 264 108 61 chrX 28754524 28754672 -133845258 - L3b LINE CR1 -147 1436 1282 192 303 10 71 chrX 28756237 28756336 -133843594 - L3 LINE CR1 -759 818 726 2978 193 64 19 chrX 28756454 28757129 -133842801 - L1ME2 LINE L1 -99 6065 5361 1475 213 7 7 chrX 28757686 28757968 -133841962 + AluJo SINE Alu 1 282 -30 388 254 118 0 chrX 28758146 28758256 -133841674 - L2 LINE L2 -1 3271 3149 191 254 91 0 chrX 28759824 28759879 -133840051 - L2 LINE L2 -4 3309 3250 286 301 24 24 chrX 28760693 28760776 -133839154 + L2 LINE L2 2222 2304 -1010 378 330 41 18 chrX 28760776 28760994 -133838936 + L2 LINE L2 2473 2695 -619 204 294 0 0 chrX 28760996 28761047 -133838883 + L2 LINE L2 3249 3299 -14 2600 147 9 13 chrX 28762613 28763061 -133836869 - L1PA16 LINE L1 -11 6155 5710 306 318 0 12 chrX 28764951 28765036 -133834894 - MER5B DNA MER1_type -74 104 21 415 293 159 6 chrX 28765870 28766027 -133833903 + MER5A DNA MER1_type 9 189 0 345 225 0 0 chrX 28766738 28766827 -133833103 + CT-rich Low_complexity Low_complexity 1 89 0 312 346 56 0 chrX 28766850 28766957 -133832973 - L2 LINE L2 0 3272 3160 243 170 0 38 chrX 28766958 28767011 -133832919 + HSMAR1 DNA Mariner 1237 1287 0 208 198 0 60 chrX 28769728 28769844 -133830086 + G-rich Low_complexity Low_complexity 3 111 0 231 161 0 0 chrX 28769936 28769992 -133829938 + G-rich Low_complexity Low_complexity 1 56 0 2239 77 14 7 chrX 28770055 28770352 -133829578 - AluSp SINE Alu -14 299 1 848 330 108 60 chrX 28770438 28771437 -133828493 + L2 LINE L2 2221 3264 -8 1165 224 5 0 chrX 28772254 28772468 -133827462 + MER58A DNA MER1_type 1 215 -9 249 33 0 0 chrX 28773897 28773927 -133826003 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 561 296 57 40 chrX 28774197 28774444 -133825486 + MIR SINE MIR 4 254 -8 351 287 0 10 chrX 28775456 28775557 -133824373 + L1MC4 LINE L1 6604 6703 -1339 376 225 8 16 chrX 28775562 28775691 -133824239 + (TA)n Simple_repeat Simple_repeat 1 128 0 222 308 105 30 chrX 28776256 28776389 -133823541 + MIR3 SINE MIR 23 165 -43 193 350 38 19 chrX 28776589 28776749 -133823181 + L3b LINE CR1 1102 1264 -319 23 0 0 0 chrX 28777843 28777866 -133822064 + AT_rich Low_complexity Low_complexity 1 23 0 3050 33 0 0 chrX 28778568 28778929 -133821001 + L1PA4 LINE L1 5790 6150 -5 182 36 0 36 chrX 28778938 28778966 -133820964 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 640 293 6 6 chrX 28779062 28779229 -133820701 + MIR SINE MIR 6 172 -90 538 222 0 0 chrX 28779255 28779354 -133820576 - LTR16C LTR ERVL 0 491 393 835 273 85 28 chrX 28779517 28779653 -133820277 - LTR16C LTR ERVL -120 371 244 2580 100 3 19 chrX 28779653 28780022 -133819908 + THE1B LTR MaLR 1 363 -1 835 273 85 28 chrX 28780022 28780204 -133819726 - LTR16C LTR ERVL -247 244 35 523 203 24 41 chrX 28780213 28780336 -133819594 + MER58A DNA MER1_type 20 140 0 292 229 16 0 chrX 28780341 28780402 -133819528 + MER58A DNA MER1_type 162 223 -1 2560 32 0 10 chrX 28780553 28780867 -133819063 + AluY SINE Alu 1 311 0 631 233 63 85 chrX 28781458 28781522 -133818408 + MER5A DNA MER1_type 2 66 -123 2335 86 0 0 chrX 28781522 28781813 -133818117 + AluSx SINE Alu 1 291 -21 631 233 63 85 chrX 28781813 28781937 -133817993 + MER5A DNA MER1_type 66 186 -3 1165 274 48 46 chrX 28782034 28782537 -133817393 + MLT1H LTR MaLR 44 547 -2 269 344 0 21 chrX 28782716 28782812 -133817118 + MIR3 SINE MIR 112 205 -3 2135 130 10 0 chrX 28782870 28783148 -133816782 + AluSx SINE Alu 1 284 -28 252 0 0 0 chrX 28783148 28783176 -133816754 + (CA)n Simple_repeat Simple_repeat 1 28 0 2135 130 10 0 chrX 28783176 28783205 -133816725 + AluSx SINE Alu 284 311 -1 322 280 42 25 chrX 28783346 28783464 -133816466 + MIR SINE MIR 21 140 -122 480 286 143 15 chrX 28784127 28784386 -133815544 + L2 LINE L2 2837 3128 -185 417 239 197 8 chrX 28784389 28784506 -133815424 - MER5A DNA MER1_type -2 187 49 416 312 116 6 chrX 28784529 28784702 -133815228 + L2 LINE L2 3122 3313 0 183 42 0 0 chrX 28785386 28785410 -133814520 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 372 290 100 56 chrX 28785784 28786125 -133813805 + LTR16A LTR ERVL 31 386 -64 329 299 10 31 chrX 28786762 28786859 -133813071 + MER5B DNA MER1_type 17 111 -67 1120 250 39 0 chrX 28786865 28787125 -133812805 + LTR16A LTR ERVL 7 276 -174 573 194 8 47 chrX 28787148 28787277 -133812653 + MER63 DNA MER1_type 1 750 -86 267 297 47 18 chrX 28787359 28787488 -133812442 + MLT1I LTR MaLR 99 206 -203 668 240 58 0 chrX 28787555 28787709 -133812221 - MER5A DNA MER1_type -1 188 26 295 308 105 0 chrX 28787719 28787862 -133812068 + MER105 DNA DNA 47 204 0 381 216 103 27 chrX 28787875 28788038 -133811892 + MLT1J2 LTR MaLR 269 437 -9 419 320 101 71 chrX 28788357 28788694 -133811236 - L2 LINE L2 -1 3271 2925 432 0 0 0 chrX 28789006 28789054 -133810876 + (TG)n Simple_repeat Simple_repeat 2 49 0 3432 54 75 6 chrX 28789134 28789614 -133810316 + LTR10D LTR ERV1 1 513 0 313 297 55 48 chrX 28789623 28789768 -133810162 + L2 LINE L2 3126 3271 -1 1480 178 42 18 chrX 28789940 28790226 -133809704 - AluJb SINE Alu -19 293 1 1974 104 45 0 chrX 28790615 28790904 -133809026 - AluSq SINE Alu -11 302 1 36 23 0 0 chrX 28790976 28791019 -133808911 + AT_rich Low_complexity Low_complexity 1 43 0 630 182 131 6 chrX 28791054 28791230 -133808700 - MER63 DNA MER1_type -43 1017 820 353 305 114 38 chrX 28792123 28792333 -133807597 + MIR SINE MIR 32 257 -5 496 162 0 12 chrX 28793462 28793561 -133806369 + L1MA4 LINE L1 6161 6255 -45 5993 207 22 17 chrX 28793562 28794737 -133805193 + L1 LINE L1 2275 3460 -2686 2127 131 3 0 chrX 28794737 28795042 -133804888 + AluSg SINE Alu 1 306 -4 5993 207 22 17 chrX 28795042 28795286 -133804644 + L1 LINE L1 3460 3701 -2445 2722 125 22 16 chrX 28795293 28795740 -133804190 + L1PB2 LINE L1 5701 6150 -1 37 0 0 0 chrX 28795790 28795827 -133804103 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrX 28795879 28795908 -133804022 + AT_rich Low_complexity Low_complexity 1 29 0 2327 78 3 0 chrX 28796665 28796960 -133802970 + AluSp SINE Alu 1 296 -17 332 220 77 71 chrX 28797057 28797225 -133802705 + MER90 LTR ERV1 1 169 -406 854 289 60 16 chrX 28797231 28797549 -133802381 + MER90 LTR ERV1 276 607 -7 2347 80 0 13 chrX 28797952 28798252 -133801678 - AluY SINE Alu -13 298 3 522 0 0 0 chrX 28799393 28799451 -133800479 + (CA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chrX 28799829 28799852 -133800078 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chrX 28800452 28800487 -133799443 + AT_rich Low_complexity Low_complexity 1 35 0 1058 235 72 7 chrX 28801113 28801390 -133798540 + Charlie4a DNA MER1_type 6 300 -208 329 156 62 0 chrX 28801397 28801461 -133798469 + Charlie4a DNA MER1_type 426 493 -15 749 241 94 130 chrX 28801946 28802121 -133797809 - L1MC4 LINE L1 -6 8036 7856 279 0 0 0 chrX 28802121 28802152 -133797778 + (CA)n Simple_repeat Simple_repeat 1 31 0 749 241 94 130 chrX 28802152 28803185 -133796745 - L1MC4 LINE L1 -186 7856 6766 498 231 105 74 chrX 28803976 28804205 -133795725 + Charlie8 DNA MER1_type 1 236 -2181 347 129 251 61 chrX 28804208 28804360 -133795570 + MER5A DNA MER1_type 4 189 0 764 271 65 5 chrX 28804515 28804729 -133795201 - MIR SINE MIR -21 241 15 258 125 0 0 chrX 28804960 28805008 -133794922 + (A)n Simple_repeat Simple_repeat 1 48 0 303 378 21 77 chrX 28805008 28805347 -133794583 + L2 LINE L2 2945 3264 -8 263 363 60 44 chrX 28806132 28806314 -133793616 - L2 LINE L2 -209 3063 2879 1906 115 59 7 chrX 28806690 28806978 -133792952 + AluSx SINE Alu 1 303 -9 306 329 25 86 chrX 28807646 28808005 -133791925 - L2 LINE L2 -766 2548 2212 207 0 0 0 chrX 28808740 28808763 -133791167 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chrX 28809180 28809209 -133790721 + AT_rich Low_complexity Low_complexity 1 29 0 526 189 0 11 chrX 28809718 28809813 -133790117 - AluJ/FLAM SINE Alu -218 94 1 324 320 95 40 chrX 28810154 28810479 -133789451 + L2 LINE L2 1852 2194 -1120 1024 302 40 22 chrX 28810501 28810902 -133789028 - MLT1J LTR MaLR 0 511 104 258 304 9 27 chrX 28811004 28811116 -133788814 + L2 LINE L2 2275 2384 -930 205 353 59 29 chrX 28811333 28811469 -133788461 - MIR SINE MIR -103 159 20 1700 166 3 36 chrX 28811675 28811977 -133787953 - AluJb SINE Alu -20 292 1 1461 174 17 34 chrX 28811995 28812364 -133787566 - L1MA4 LINE L1 -4 6167 5757 22 70 0 0 chrX 28812614 28812657 -133787273 + AT_rich Low_complexity Low_complexity 1 43 0 391 289 70 6 chrX 28813047 28813203 -133786727 + MIR SINE MIR 90 255 -7 291 333 89 13 chrX 28813300 28813601 -133786329 + L1M4 LINE L1 104 534 -6012 3790 259 85 43 chrX 28813745 28815458 -133784472 + L1M4 LINE L1 745 2384 -4260 1825 171 44 0 chrX 28815458 28815673 -133784257 + MER46B DNA MER2_type 2 114 -2617 588 65 0 0 chrX 28815673 28815750 -133784180 + (TA)n Simple_repeat Simple_repeat 1 77 0 1825 171 44 0 chrX 28815750 28815878 -133784052 + MER46B DNA MER2_type 114 235 -1 3790 259 85 43 chrX 28815878 28817222 -133782708 + L1M4 LINE L1 2384 4027 -2617 2059 210 33 65 chrX 28817219 28817894 -133782036 + L1M4 LINE L1 4648 5300 -1344 * 355 242 0 21 chrX 28817964 28818059 -133781871 + L1M4 LINE L1 5299 5391 -1253 4749 163 31 62 chrX 28818111 28819135 -133780795 + L1MA10 LINE L1 5282 6274 -60 503 195 0 0 chrX 28819135 28819217 -133780713 - Tigger5 DNA MER2_type 0 2323 2242 368 227 0 0 chrX 28819207 28819282 -133780648 + Tigger5 DNA MER2_type 2242 2316 -7 * 425 172 11 35 chrX 28819279 28819366 -133780564 - Tigger5 DNA MER2_type -2238 85 1 1338 196 65 4 chrX 28819438 28819713 -133780217 + AluJo SINE Alu 3 294 -18 348 319 105 57 chrX 28820462 28820691 -133779239 + L2 LINE L2 2820 3059 -254 413 316 30 15 chrX 28821224 28821357 -133778573 + L2 LINE L2 3134 3268 -4 1109 76 7 0 chrX 28821384 28821529 -133778401 + AluSg/x SINE Alu 161 306 -6 244 286 71 0 chrX 28821573 28821643 -133778287 + L2 LINE L2 3229 3303 -10 1964 73 9 98 chrX 28822052 28822379 -133777551 + AluSx SINE Alu 1 298 -14 1614 169 86 30 chrX 28822384 28822757 -133777173 - Charlie1b DNA MER1_type -129 394 1 480 18 0 0 chrX 28822931 28822988 -133776942 + (TC)n Simple_repeat Simple_repeat 2 58 0 902 212 18 0 chrX 28823641 28823811 -133776119 - MER58B DNA MER1_type 0 341 169 527 121 0 11 chrX 28824652 28824743 -133775187 + (GA)n Simple_repeat Simple_repeat 2 91 0 2224 91 0 0 chrX 28825794 28826081 -133773849 - AluSq SINE Alu -26 287 1 384 340 73 5 chrX 28828733 28828939 -133770991 + L3b LINE CR1 1203 1422 -161 214 344 54 11 chrX 28830134 28830227 -133769703 - MIR SINE MIR -146 116 20 302 324 121 11 chrX 28830536 28830718 -133769212 + L2 LINE L2 3112 3313 0 238 250 21 14 chrX 28831695 28831839 -133768091 + (TA)n Simple_repeat Simple_repeat 2 146 0 13859 133 19 10 chrX 28831839 28834051 -133765879 + Tigger1 DNA MER2_type 1 2231 -187 5506 167 24 24 chrX 28834059 28835206 -133764724 - L1PA16 LINE L1 -9 6157 5017 1999 91 3 25 chrX 28835206 28835491 -133764439 - AluSc SINE Alu -30 279 1 5506 167 24 24 chrX 28835491 28836158 -133763772 - L1PA16 LINE L1 -1149 5017 4351 1026 168 97 0 chrX 28836164 28836349 -133763581 + Tigger1 DNA MER2_type 2216 2418 0 429 167 0 0 chrX 28836349 28836427 -133763503 + (TA)n Simple_repeat Simple_repeat 1 78 0 345 290 164 39 chrX 28836427 28836634 -133763296 - L2 LINE L2 -182 3131 2899 529 51 13 13 chrX 28836708 28836786 -133763144 + (TC)n Simple_repeat Simple_repeat 1 78 0 333 0 0 0 chrX 28837767 28837804 -133762126 + (CA)n Simple_repeat Simple_repeat 2 38 0 397 308 205 11 chrX 28839142 28839327 -133760603 - MIR SINE MIR -2 260 40 189 0 0 0 chrX 28840553 28840574 -133759356 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 244 270 63 0 chrX 28840576 28840639 -133759291 - L2 LINE L2 -6 3266 3200 22 35 0 0 chrX 28841034 28841063 -133758867 + AT_rich Low_complexity Low_complexity 1 29 0 1628 86 35 0 chrX 28841229 28841461 -133758469 - L1PA13 LINE L1 -3 6160 5921 366 263 44 31 chrX 28841531 28841691 -133758239 - MER104 DNA Tc2 -14 166 5 302 225 45 54 chrX 28841772 28841883 -133758047 + MLT1I LTR MaLR 99 208 -341 414 207 20 44 chrX 28842040 28842154 -133757776 + MLT1I LTR MaLR 278 567 0 1317 257 50 35 chrX 28842919 28843595 -133756335 - L2 LINE L2 -6 3307 2626 324 184 0 122 chrX 28843856 28843954 -133755976 + MER58B DNA MER1_type 251 336 -5 535 81 11 0 chrX 28844014 28844101 -133755829 + L1MA7 LINE L1 6204 6291 0 21 57 0 0 chrX 28844192 28844227 -133755703 + AT_rich Low_complexity Low_complexity 1 35 0 2022 116 7 0 chrX 28844230 28844514 -133755416 - AluSx SINE Alu -26 286 1 859 256 82 0 chrX 28844536 28844743 -133755187 - MER58A DNA MER1_type 0 224 1 265 291 107 15 chrX 28844775 28844921 -133755009 + MIR SINE MIR 29 196 -66 586 250 17 23 chrX 28845517 28845689 -133754241 + MER104 DNA Tc2 10 180 0 476 287 59 51 chrX 28845746 28846000 -133753930 - MIR SINE MIR -2 260 5 975 198 38 9 chrX 28846111 28846323 -133753607 - MER20 DNA MER1_type 0 219 2 396 284 117 15 chrX 28847390 28847743 -133752187 + L1ME LINE L1 5254 5751 -411 2280 112 0 0 chrX 28848427 28848739 -133751191 + AluSx SINE Alu 1 312 0 25 31 0 0 chrX 28849754 28849786 -133750144 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrX 28849916 28849937 -133749993 + AT_rich Low_complexity Low_complexity 1 21 0 213 229 0 21 chrX 28850832 28850880 -133749050 + MER5A DNA MER1_type 1 47 -142 1121 259 88 37 chrX 28852422 28852958 -133746972 + L1MC4a LINE L1 5287 5849 -1959 261 0 0 0 chrX 28852969 28852998 -133746932 + (TG)n Simple_repeat Simple_repeat 2 30 0 315 0 0 0 chrX 28853067 28853102 -133746828 + (CA)n Simple_repeat Simple_repeat 2 36 0 270 0 0 0 chrX 28853278 28853308 -133746622 + (CA)n Simple_repeat Simple_repeat 2 31 0 29 21 0 21 chrX 28853450 28853484 -133746446 + AT_rich Low_complexity Low_complexity 1 35 -11 2089 97 4 0 chrX 28853484 28853762 -133746168 - AluSg SINE Alu -31 279 1 29 21 0 21 chrX 28853762 28853774 -133746156 + AT_rich Low_complexity Low_complexity 35 46 0 280 242 76 102 chrX 28853919 28854071 -133745859 + MER112 DNA MER1_type 81 228 -32 2238 130 0 0 chrX 28854071 28854393 -133745537 + MER48 LTR ERV1 1 322 -65 2217 67 7 3 chrX 28854393 28854693 -133745237 + AluY SINE Alu 1 301 -10 390 243 147 34 chrX 28854739 28854916 -133745014 + Charlie2 DNA MER1_type 171 367 -2415 * 1351 197 104 55 chrX 28854911 28855480 -133744450 + Charlie2 DNA MER1_type 2231 2827 -35 1941 157 7 3 chrX 28855816 28856121 -133743809 - AluSx SINE Alu -6 306 1 272 329 12 0 chrX 28856278 28856381 -133743549 - MIR SINE MIR -67 141 37 24 0 0 0 chrX 28856781 28856805 -133743125 + AT_rich Low_complexity Low_complexity 1 24 0 352 226 129 0 chrX 28856939 28857032 -133742898 + MER67D-int LTR ERV1 63 167 -4769 2618 219 23 31 chrX 28857289 28857892 -133742038 + MER67D-int LTR ERV1 369 966 -3970 804 202 78 12 chrX 28857889 28858227 -133741703 + MER67D-int LTR ERV1 1966 2357 -2579 * 4947 223 51 68 chrX 28858540 28860176 -133739754 + MER67D-int LTR ERV1 2480 4088 -848 1189 165 36 94 chrX 28860179 28860488 -133739442 - L1MA10 LINE L1 -1 6333 6043 524 212 176 6 chrX 28860489 28860659 -133739271 + MER67D-int LTR ERV1 4083 4281 -655 292 147 80 27 chrX 28860660 28860735 -133739195 + LTR37A LTR ERV1 51 129 -297 426 225 0 0 chrX 28860823 28860912 -133739018 + MER67D-int LTR ERV1 4381 4469 -467 453 219 6 54 chrX 28860993 28861178 -133738752 + MER67D-int LTR ERV1 4482 5943 -371 * 632 216 140 59 chrX 28861147 28861383 -133738547 + MER67D-int LTR ERV1 4582 4836 -100 1879 196 80 54 chrX 28861465 28861966 -133737964 + MER67D LTR ERV1 1 514 0 21 0 0 0 chrX 28865925 28865946 -133733984 + AT_rich Low_complexity Low_complexity 1 21 0 2444 123 76 28 chrX 28865969 28866432 -133733498 + MER31A LTR ERV1 1 485 0 330 336 0 8 chrX 28867438 28867560 -133732370 - MIR SINE MIR -14 248 128 553 321 86 21 chrX 28867603 28867846 -133732084 + MIR SINE MIR 2 260 -2 827 124 0 8 chrX 28867896 28868017 -133731913 + FLAM_C SINE Alu 1 120 -23 262 22 89 0 chrX 28868017 28868062 -133731868 + A-rich Low_complexity Low_complexity 2 50 0 243 262 60 12 chrX 28868623 28868707 -133731223 - LTR65 LTR ERV1 -274 395 308 252 0 0 0 chrX 28868995 28869023 -133730907 + (TG)n Simple_repeat Simple_repeat 1 28 0 1086 282 77 17 chrX 28869825 28870333 -133729597 + L1MC/D LINE L1 5118 5655 -747 2143 154 25 3 chrX 28870441 28870797 -133729133 - THE1B LTR MaLR 0 364 1 425 249 134 17 chrX 28871638 28871904 -133728026 + L1ME LINE L1 5176 5469 -695 2728 199 96 92 chrX 28871974 28873199 -133726731 + Tigger3b DNA MER2_type 1 1230 -1 887 279 61 12 chrX 28873243 28873573 -133726357 + L1ME3A LINE L1 4446 4791 -1355 2248 280 72 26 chrX 28873620 28874820 -133725110 + L1ME3A LINE L1 4887 6165 -5 378 281 63 38 chrX 28874812 28875050 -133724880 + L1ME LINE L1 5570 5813 -308 * 5446 147 12 21 chrX 28875155 28876119 -133723811 + L1MA8 LINE L1 5326 6281 -10 297 341 66 28 chrX 28876386 28876597 -133723333 - MIR SINE MIR -24 238 20 2651 45 0 3 chrX 28876657 28876967 -133722963 + AluY SINE Alu 1 309 -2 475 276 178 20 chrX 28878298 28878450 -133721480 - MIR SINE MIR -81 181 6 327 25 0 0 chrX 28880936 28880976 -133718954 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 348 24 0 0 chrX 28880975 28881016 -133718914 + (CA)n Simple_repeat Simple_repeat 1 41 0 684 184 0 29 chrX 28881555 28881734 -133718196 + FLAM_C SINE Alu 2 176 0 421 175 135 0 chrX 28881747 28881860 -133718070 - MER3 DNA MER1_type -79 130 48 216 0 0 0 chrX 28882113 28882137 -133717793 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 28882217 28882239 -133717691 + AT_rich Low_complexity Low_complexity 1 22 0 1177 216 64 24 chrX 28882776 28883104 -133716826 + MER58B DNA MER1_type 1 341 0 23 33 0 0 chrX 28883607 28883637 -133716293 + AT_rich Low_complexity Low_complexity 1 30 0 1173 189 33 46 chrX 28883673 28883831 -133716099 + MER33 DNA MER1_type 1 155 -2430 1878 195 0 14 chrX 28883831 28884180 -133715750 - MER7A DNA MER2_type -4 342 1 1173 189 33 46 chrX 28884180 28884328 -133715602 + MER33 DNA MER1_type 155 303 -21 333 257 157 21 chrX 28885104 28885244 -133714686 + MIR3 SINE MIR 30 188 -20 193 242 0 0 chrX 28885308 28885341 -133714589 + L2 LINE L2 3158 3190 -82 22 0 0 0 chrX 28886235 28886257 -133713673 + AT_rich Low_complexity Low_complexity 1 22 0 200 211 0 0 chrX 28886318 28886356 -133713574 - L2 LINE L2 -21 3251 3214 278 235 133 0 chrX 28886686 28886784 -133713146 - MER53 DNA DNA 0 189 79 1619 204 83 47 chrX 28887439 28887972 -133711958 + MER69 DNA AcHobo 1975 2526 0 7763 20 0 0 chrX 28888249 28889353 -133710577 - L1PA3 LINE L1 0 6155 5052 5536 30 0 1 chrX 28889354 28890021 -133709909 + L1PA3 LINE L1 4399 5064 -1082 25 0 0 0 chrX 28890394 28890419 -133709511 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chrX 28890948 28890974 -133708956 + AT_rich Low_complexity Low_complexity 1 26 0 2129 127 48 22 chrX 28891569 28891924 -133708006 + THE1B LTR MaLR 1 364 0 1039 69 21 0 chrX 28891924 28892069 -133707861 + THE1B-int LTR MaLR 1 148 -1432 1196 118 20 0 chrX 28893141 28893345 -133706585 - L1MA8 LINE L1 0 6291 6084 260 344 110 13 chrX 28893672 28893826 -133706104 + MIR SINE MIR 66 234 -28 1294 167 75 3 chrX 28894376 28894669 -133705261 - MER33 DNA MER1_type -8 316 3 1488 270 66 40 chrX 28895657 28896234 -133703696 + MLT1E LTR MaLR 2 593 0 2526 105 16 5 chrX 28897303 28897674 -133702256 + THE1C LTR MaLR 1 375 0 763 273 53 5 chrX 28898437 28898646 -133701284 - LTR16C LTR ERVL 0 491 273 4892 49 10 5 chrX 28898647 28899383 -133700547 + L1P2 LINE L1 4747 5482 -672 1040 153 47 48 chrX 28899385 28899611 -133700319 - L1MA9 LINE L1 -10 6158 5933 2168 113 50 19 chrX 28899611 28899975 -133699955 + THE1C LTR MaLR 1 375 0 9294 112 65 9 chrX 28899975 28901471 -133698459 + THE1C-int LTR MaLR 1 1580 0 2257 104 50 19 chrX 28901471 28901835 -133698095 + THE1C LTR MaLR 1 375 0 1040 153 47 48 chrX 28901835 28901847 -133698083 - L1MA9 LINE L1 -153 6015 6004 376 313 99 21 chrX 28902223 28902456 -133697474 + L2 LINE L2 3057 3307 -6 240 163 0 0 chrX 28903921 28903964 -133695966 - L1MB2 LINE L1 -2 6169 6127 2418 154 19 12 chrX 28903964 28904393 -133695537 - MSTB1 LTR MaLR 0 432 1 521 386 84 30 chrX 28904475 28905164 -133694766 + L2 LINE L2 2243 2968 -346 408 252 69 31 chrX 28905384 28905620 -133694310 - MLT1L LTR MaLR -5 609 335 2117 122 3 3 chrX 28907270 28907589 -133692341 + MER47A DNA MER2_type 13 331 -35 416 188 0 0 chrX 28907590 28907659 -133692271 + MER47A DNA MER2_type 298 366 0 1481 208 142 75 chrX 28907691 28908464 -133691466 + LTR1B LTR ERV1 1 825 -1 22 0 0 0 chrX 28909200 28909222 -133690708 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 28909759 28909788 -133690142 + AT_rich Low_complexity Low_complexity 1 29 0 297 309 91 55 chrX 28910281 28910446 -133689484 + MIR3 SINE MIR 21 191 -17 2765 221 25 23 chrX 28911654 28912626 -133687304 + L1M4c LINE L1 2042 3025 -3357 1943 148 7 0 chrX 28913673 28913971 -133685959 - AluSx SINE Alu -12 300 1 723 333 44 0 chrX 28914074 28914326 -133685604 - LTR16A LTR ERVL 0 450 188 6734 60 8 1 chrX 28914735 28915601 -133684329 + L1PA7 LINE L1 5279 6150 -4 2354 182 18 16 chrX 28915615 28916125 -133683805 - L1MB2 LINE L1 -16 6155 5645 1894 196 58 10 chrX 28916125 28916518 -133683412 - MER47B DNA MER2_type 0 418 7 402 86 17 0 chrX 28916524 28916582 -133683348 - L1M3 LINE L1 -688 5646 5588 1803 148 12 21 chrX 28916582 28916913 -133683017 - L1MB2 LINE L1 -545 5626 5299 191 122 0 24 chrX 28917351 28917392 -133682538 + (TA)n Simple_repeat Simple_repeat 2 41 0 256 254 119 63 chrX 28918973 28919099 -133680831 + MIR SINE MIR 122 254 -8 216 175 0 0 chrX 28920450 28920490 -133679440 + CT-rich Low_complexity Low_complexity 2 41 0 297 0 0 0 chrX 28920490 28920523 -133679407 + (CA)n Simple_repeat Simple_repeat 2 34 0 2317 89 3 3 chrX 28921340 28921643 -133678287 + AluSc SINE Alu 1 303 -6 1285 200 56 4 chrX 28922662 28922932 -133676998 + AluJb SINE Alu 5 288 -24 329 329 0 28 chrX 28923187 28923397 -133676533 + G-rich Low_complexity Low_complexity 1 204 0 201 175 0 0 chrX 28923440 28923480 -133676450 + (TA)n Simple_repeat Simple_repeat 2 41 0 310 299 23 0 chrX 28923486 28923573 -133676357 + L1MC4 LINE L1 6614 6702 -1340 * 314 258 0 43 chrX 28923502 28923595 -133676335 - L1MC4 LINE L1 -1339 6703 6615 255 125 0 0 chrX 28923595 28923635 -133676295 + (CA)n Simple_repeat Simple_repeat 1 40 0 1699 129 47 85 chrX 28923644 28924008 -133675922 - THE1C LTR MaLR -25 350 1 1355 145 0 12 chrX 28924323 28924564 -133675366 + L1MA2 LINE L1 6054 6291 -13 493 304 83 13 chrX 28924986 28925216 -133674714 - MIR SINE MIR -6 256 11 2411 68 0 3 chrX 28925819 28926135 -133673795 - AluY SINE Alu 0 315 1 186 189 0 0 chrX 28926137 28926174 -133673756 + (TTA)n Simple_repeat Simple_repeat 2 38 0 815 165 61 25 chrX 28926336 28926634 -133673296 + MSTA LTR MaLR 1 369 -57 * 1514 191 88 41 chrX 28926628 28926990 -133672940 + MSTA LTR MaLR 33 411 -17 577 330 19 15 chrX 28929506 28929712 -133670218 - MIR SINE MIR -4 258 52 802 302 141 12 chrX 28929796 28930200 -133669730 + L2 LINE L2 2852 3307 -6 781 138 0 58 chrX 28932388 28932526 -133667404 - FLAM_C SINE Alu -2 131 2 290 359 122 30 chrX 28934577 28934839 -133665091 - L3 LINE CR1 -12 1565 1280 432 0 0 0 chrX 28935502 28935550 -133664380 + (GA)n Simple_repeat Simple_repeat 1 48 0 2687 28 0 0 chrX 28935607 28935927 -133664003 - L1PA4 LINE L1 -1 6154 5835 524 115 0 0 chrX 28936238 28936316 -133663614 + (GGGGA)n Simple_repeat Simple_repeat 4 81 0 420 323 31 21 chrX 28936491 28936683 -133663247 + MIR3 SINE MIR 15 208 0 1614 112 16 0 chrX 28936827 28937078 -133662852 + L1MA5A LINE L1 6040 6294 -3 202 340 0 0 chrX 28937343 28937396 -133662534 + MIR3 SINE MIR 111 163 -45 9591 191 32 18 chrX 28937624 28940652 -133659278 + L1MB1 LINE L1 3069 6142 -26 441 273 91 3 chrX 28942257 28942435 -133657495 + MIR SINE MIR 1 248 -14 24 100 0 0 chrX 28943808 28943888 -133656042 + AT_rich Low_complexity Low_complexity 1 80 0 243 0 0 0 chrX 28944600 28944627 -133655303 + (CA)n Simple_repeat Simple_repeat 2 28 0 236 133 0 0 chrX 28945107 28945152 -133654778 - L1MA3 LINE L1 -3 6302 6258 205 266 31 0 chrX 28946056 28946120 -133653810 + (TG)n Simple_repeat Simple_repeat 1 66 0 5593 161 11 6 chrX 28948763 28949933 -133649997 - L1PA16 LINE L1 -1 6165 4993 394 215 0 19 chrX 28949926 28950033 -133649897 - L1 LINE L1 -1251 4895 4791 * 719 170 0 0 chrX 28950584 28950719 -133649211 + L1MA4 LINE L1 6166 6300 0 374 91 0 18 chrX 28951873 28951949 -133647981 - L1PB1 LINE L1 -420 5731 5680 * 2138 126 13 78 chrX 28951946 28952342 -133647588 + L1PB1 LINE L1 5735 6104 -47 * 3856 32 9 0 chrX 28952338 28952799 -133647131 - L1PA4 LINE L1 -262 5892 5428 2414 18 0 0 chrX 28952799 28953080 -133646850 + L1PA4 LINE L1 5870 6152 -3 308 133 12 48 chrX 28953080 28953159 -133646771 + L1PB1 LINE L1 6069 6148 -3 27 62 0 0 chrX 28953718 28953766 -133646164 + AT_rich Low_complexity Low_complexity 1 48 0 1215 226 76 6 chrX 28955837 28956151 -133643779 + MER58B DNA MER1_type 6 341 0 357 125 0 0 chrX 28956260 28956316 -133643614 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1771 161 3 16 chrX 28957184 28957494 -133642436 + AluSx SINE Alu 7 312 0 189 0 0 0 chrX 28957498 28957519 -133642411 + (GA)n Simple_repeat Simple_repeat 2 22 0 195 385 55 69 chrX 28957521 28957739 -133642191 - L2 LINE L2 -21 3251 3037 2407 77 0 3 chrX 28957779 28958091 -133641839 - AluY SINE Alu 0 311 1 329 261 113 11 chrX 28958168 28958286 -133641644 - MER5A DNA MER1_type -54 124 8 1045 241 12 19 chrX 28958481 28958738 -133641192 + L1ME3A LINE L1 5916 6170 0 1746 323 171 17 chrX 28958994 28960086 -133639844 + L2 LINE L2 1715 2974 -340 1090 240 83 63 chrX 28960099 28960653 -133639277 + MER34B LTR ERV1 1 565 0 201 328 17 0 chrX 28960654 28960712 -133639218 + L2 LINE L2 2984 3042 -271 1850 151 0 10 chrX 28960727 28961088 -133638842 + AluSx SINE Alu 5 362 0 363 314 31 31 chrX 28961164 28961323 -133638607 + L2 LINE L2 3152 3310 -3 774 301 80 4 chrX 28962063 28962325 -133637605 + LTR16A LTR ERVL 1 282 -168 1332 281 77 44 chrX 28962331 28962826 -133637104 + REP3 LTR ERV 5 515 -47 568 298 0 0 chrX 28962843 28962984 -133636946 + LTR16A LTR ERVL 283 423 -27 1946 142 4 0 chrX 28962984 28963296 -133636634 + AluSp SINE Alu 1 313 0 273 158 0 0 chrX 28963316 28963354 -133636576 + LTR16A LTR ERVL 413 450 0 1292 188 72 14 chrX 28963644 28963803 -133636127 - AluJo SINE Alu -20 292 109 432 0 0 0 chrX 28963803 28963851 -133636079 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1292 188 72 14 chrX 28963851 28963967 -133635963 - AluJo SINE Alu -203 109 1 1992 92 60 0 chrX 28964684 28964968 -133634962 - AluY SINE Alu -10 301 1 189 159 0 0 chrX 28965633 28965677 -133634253 + (TG)n Simple_repeat Simple_repeat 2 45 0 204 272 163 43 chrX 28965688 28965780 -133634150 + MER91A DNA MER1_type 28 130 -66 295 369 119 12 chrX 28966255 28966423 -133633507 + MER91A DNA MER1_type 1 186 -10 210 258 0 0 chrX 28966626 28966688 -133633242 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 241 250 17 43 chrX 28966688 28966707 -133633223 - L1MA4A LINE L1 -2 6301 6283 1225 187 51 29 chrX 28966707 28966980 -133632950 - L1PB4 LINE L1 -1 6155 5877 321 267 0 0 chrX 28967009 28967099 -133632831 + L1MC4 LINE L1 6614 6703 -1339 300 251 26 15 chrX 28967019 28967153 -133632777 - L1MC4 LINE L1 -1139 6646 6541 * 804 264 150 26 chrX 28967222 28967732 -133632198 + L1ME3A LINE L1 5589 6169 -1 440 303 62 45 chrX 28969591 28969835 -133630095 - MIR SINE MIR 0 262 15 351 0 0 0 chrX 28970087 28970126 -133629804 + (TG)n Simple_repeat Simple_repeat 1 39 0 180 302 0 0 chrX 28970343 28970396 -133629534 - L2 LINE L2 -213 3059 3007 424 265 139 6 chrX 28970469 28970635 -133629295 - L1ME1 LINE L1 -2 6164 5977 3931 143 5 9 chrX 28970695 28971340 -133628590 - L1PA15 LINE L1 -3 6162 5521 279 0 0 0 chrX 28974140 28974171 -133625759 + (T)n Simple_repeat Simple_repeat 1 31 0 1118 131 7 6 chrX 28974642 28974838 -133625092 - L1M2 LINE L1 -513 5784 5587 212 238 188 12 chrX 28976503 28976583 -133623347 - MIR3 SINE MIR -23 185 92 944 57 0 0 chrX 28977321 28977445 -133622485 - L1PA4 LINE L1 -1 6154 6031 427 246 59 25 chrX 28977614 28977732 -133622198 - MIR SINE MIR -117 145 24 3237 70 0 16 chrX 28978493 28978935 -133620995 - L1PA8 LINE L1 -3 6169 5735 225 242 8 17 chrX 28979532 28979652 -133620278 + (TA)n Simple_repeat Simple_repeat 2 120 0 1894 26 0 0 chrX 28980504 28980731 -133619199 - L1PA4 LINE L1 -594 5561 5335 4725 46 5 0 chrX 28980731 28981317 -133618613 + L1PA4 LINE L1 5564 6155 0 267 31 0 0 chrX 28981788 28981820 -133618110 + (TA)n Simple_repeat Simple_repeat 2 33 0 336 276 16 49 chrX 28982643 28982766 -133617164 + MIR SINE MIR 8 126 -136 1604 169 47 23 chrX 28983178 28983479 -133616451 + MSTC LTR MaLR 1 308 -120 596 167 0 0 chrX 28983478 28983568 -133616362 + 5S rRNA rRNA 1 90 -31 * 948 118 0 0 chrX 28983565 28983700 -133616230 + MSTC LTR MaLR 293 427 -1 27 49 0 0 chrX 28983947 28983988 -133615942 + AT_rich Low_complexity Low_complexity 1 41 0 313 321 95 23 chrX 28985662 28985864 -133614066 - MIR SINE MIR -2 260 36 884 251 143 101 chrX 28985896 28986590 -133613340 - MER20B DNA MER1_type -5 778 56 223 268 72 31 chrX 28986632 28986729 -133613201 + MIR SINE MIR 160 260 -2 248 261 45 34 chrX 28987913 28988001 -133611929 + MIR3 SINE MIR 110 198 -10 1516 226 69 67 chrX 28988688 28988752 -133611178 - MLT2B1 LTR ERVL -8 512 450 384 71 0 0 chrX 28988752 28988808 -133611122 + (TG)n Simple_repeat Simple_repeat 1 56 0 1516 226 69 67 chrX 28988808 28989253 -133610677 - MLT2B1 LTR ERVL -70 450 2 348 275 67 20 chrX 28989625 28989774 -133610156 + L1ME4a LINE L1 5713 5868 -253 225 271 42 88 chrX 28990269 28990531 -133609399 + L1ME4a LINE L1 5870 6119 -2 191 250 0 0 chrX 28990966 28991006 -133608924 - MIR3 SINE MIR -1 207 168 196 378 51 0 chrX 28993467 28993565 -133606365 - L2 LINE L2 -18 3254 3152 948 207 6 6 chrX 28993619 28993788 -133606142 - MER5A DNA MER1_type 0 189 21 282 326 45 0 chrX 28994383 28994472 -133605458 - MIR SINE MIR -66 142 50 282 252 282 0 chrX 28994527 28994658 -133605272 - HsTC2 DNA Tc2 -1710 188 21 1173 137 5 9 chrX 28994658 28994870 -133605060 + L1MA4 LINE L1 6084 6294 -6 1838 300 130 30 chrX 28996256 28996649 -133603281 + L2 LINE L2 1800 2152 -1161 1875 154 0 23 chrX 28996649 28996954 -133602976 - AluJb SINE Alu -14 298 1 1838 300 130 30 chrX 28996954 28997931 -133601999 + L2 LINE L2 2152 3312 -1 323 252 12 54 chrX 28997951 28998091 -133601839 + MER34B LTR ERV1 31 245 -406 310 264 121 23 chrX 28998287 28998461 -133601469 + MER34 LTR ERV1 352 542 0 737 253 6 0 chrX 28999950 29000108 -133599822 + MER5A DNA MER1_type 31 189 0 1916 142 0 82 chrX 29000116 29000483 -133599447 - MER1B DNA MER1_type 0 337 1 1482 140 20 16 chrX 29000508 29000758 -133599172 + AluSx SINE Alu 50 300 -12 354 358 54 0 chrX 29001332 29001480 -133598450 + L2 LINE L2 3116 3271 -1 783 213 31 0 chrX 29001662 29001822 -133598108 + MER5A DNA MER1_type 1 165 -24 286 304 40 61 chrX 29001694 29001842 -133598088 - MER5A DNA MER1_type -23 166 22 * 286 237 31 41 chrX 29001873 29001970 -133597960 - MER5A DNA MER1_type -56 133 38 339 25 0 0 chrX 29003032 29003072 -133596858 + (TA)n Simple_repeat Simple_repeat 2 41 0 247 294 39 106 chrX 29003618 29003798 -133596132 - MER5A DNA MER1_type 0 189 22 309 304 40 32 chrX 29003835 29003960 -133595970 - MER5A DNA MER1_type -63 126 1 190 217 43 72 chrX 29004052 29004121 -133595809 + L2 LINE L2 3205 3271 -1 423 0 0 0 chrX 29004607 29004654 -133595276 + (TA)n Simple_repeat Simple_repeat 2 48 0 745 173 98 17 chrX 29004716 29004889 -133595041 - MER5A DNA MER1_type -2 187 1 182 379 131 20 chrX 29005051 29005204 -133594726 + L2 LINE L2 3092 3261 -11 215 301 0 41 chrX 29005448 29005521 -133594409 - L2 LINE L2 0 3313 3244 623 346 29 8 chrX 29005548 29005791 -133594139 - MIR SINE MIR -13 249 2 961 324 106 50 chrX 29005974 29007077 -133592853 - L2 LINE L2 0 3313 2140 274 304 113 9 chrX 29007148 29007263 -133592667 - MIR3 SINE MIR -50 158 32 668 205 26 0 chrX 29007287 29007404 -133592526 + MER5A DNA MER1_type 7 126 -63 3339 150 77 11 chrX 29008466 29009086 -133590844 + MER67B LTR ERV1 1 661 0 21 0 0 0 chrX 29009868 29009889 -133590041 + AT_rich Low_complexity Low_complexity 1 21 0 183 100 0 0 chrX 29011087 29011117 -133588813 + (TA)n Simple_repeat Simple_repeat 2 31 0 390 42 0 0 chrX 29011118 29011166 -133588764 + (GA)n Simple_repeat Simple_repeat 1 48 0 709 311 102 38 chrX 29011872 29012312 -133587618 + L2 LINE L2 2700 3175 -138 2210 96 0 0 chrX 29012312 29012625 -133587305 + AluSx SINE Alu 2 314 0 709 311 102 38 chrX 29012625 29012769 -133587161 + L2 LINE L2 3175 3308 -5 252 357 36 18 chrX 29012767 29012879 -133587051 - MIR SINE MIR -86 176 63 * 190 255 174 31 chrX 29013238 29013336 -133586594 + MIR SINE MIR 32 143 -65 23 68 0 0 chrX 29013526 29013570 -133586360 + AT_rich Low_complexity Low_complexity 1 44 0 311 296 23 73 chrX 29013768 29013951 -133585979 - MIR SINE MIR -51 157 21 1538 289 80 34 chrX 29014341 29014391 -133585539 + L2 LINE L2 2019 2065 -1248 339 25 0 0 chrX 29014391 29014431 -133585499 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 2040 118 4 7 chrX 29014433 29014713 -133585217 - AluSg SINE Alu -31 279 1 1538 289 80 34 chrX 29014713 29015728 -133584202 + L2 LINE L2 2065 3308 -5 1601 161 47 7 chrX 29016861 29017135 -133582795 + AluJb SINE Alu 5 289 -23 378 0 0 0 chrX 29017961 29018003 -133581927 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1865 30 0 13 chrX 29018198 29018429 -133581501 + L1PA3 LINE L1 5928 6155 0 419 123 14 0 chrX 29019019 29019092 -133580838 - L1PA16 LINE L1 -2 6164 6091 192 298 60 86 chrX 29019942 29020093 -133579837 + MIR SINE MIR 88 234 -28 198 282 24 35 chrX 29020286 29020371 -133579559 - MIR SINE MIR -144 118 35 756 251 29 18 chrX 29021102 29021408 -133578522 + L1MD3 LINE L1 6050 7982 -13 2323 103 17 3 chrX 29022174 29022524 -133577406 - THE1A LTR MaLR 0 355 1 22 35 0 0 chrX 29022725 29022754 -133577176 + AT_rich Low_complexity Low_complexity 1 29 0 2099 122 0 34 chrX 29022754 29023075 -133576855 + AluSx SINE Alu 1 310 -2 24 32 0 0 chrX 29023226 29023257 -133576673 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chrX 29023284 29023323 -133576607 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 29023369 29023391 -133576539 + AT_rich Low_complexity Low_complexity 1 22 0 360 262 43 35 chrX 29023521 29023662 -133576268 - L2 LINE L2 0 3313 3172 212 318 9 73 chrX 29024684 29024794 -133575136 + L2 LINE L2 3206 3308 -5 2425 48 0 26 chrX 29025140 29025449 -133574481 - AluY SINE Alu -10 301 1 2089 106 0 3 chrX 29026350 29026632 -133573298 + AluSq SINE Alu 1 281 -32 198 71 0 0 chrX 29026632 29026660 -133573270 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 241 244 24 24 chrX 29027562 29027644 -133572286 + MIR SINE MIR 131 212 -50 189 119 68 0 chrX 29027857 29027916 -133572014 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 260 131 0 33 chrX 29027922 29027983 -133571947 + (GGGAGA)n Simple_repeat Simple_repeat 2 60 0 237 159 0 0 chrX 29027993 29028037 -133571893 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 485 259 171 0 chrX 29028073 29028231 -133571699 + MIR SINE MIR 78 262 0 420 314 108 5 chrX 29028315 29028500 -133571430 - MIR SINE MIR 0 262 59 265 222 11 22 chrX 29028695 29028785 -133571145 - L1MC5 LINE L1 -76 7885 7797 396 330 80 35 chrX 29029379 29029470 -133570460 + MIR SINE MIR 7 92 -170 2418 46 13 3 chrX 29029470 29029773 -133570157 - AluY SINE Alu -5 306 1 396 330 80 35 chrX 29029773 29029881 -133570049 + MIR SINE MIR 92 215 -47 458 320 19 0 chrX 29030939 29031095 -133568835 - MIR SINE MIR 0 262 104 432 331 36 27 chrX 29031343 29031787 -133568143 - LTR16C LTR ERVL 0 491 1 199 261 29 14 chrX 29031829 29031898 -133568032 + MIR SINE MIR 174 243 -19 229 151 132 0 chrX 29031909 29031962 -133567968 + MIR SINE MIR 172 231 -31 24 67 0 0 chrX 29032760 29032805 -133567125 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chrX 29035929 29035964 -133563966 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chrX 29036657 29036678 -133563252 + AT_rich Low_complexity Low_complexity 1 21 0 248 235 212 0 chrX 29037337 29037422 -133562508 + L2 LINE L2 3197 3299 -14 396 0 0 0 chrX 29037570 29037614 -133562316 + (CA)n Simple_repeat Simple_repeat 2 45 0 2283 99 0 0 chrX 29037698 29037990 -133561940 + AluSc SINE Alu 3 294 -15 345 47 0 0 chrX 29038228 29038271 -133561659 + (CA)n Simple_repeat Simple_repeat 2 44 0 424 288 123 6 chrX 29039653 29039823 -133560107 + MIR SINE MIR 22 211 -51 768 196 0 0 chrX 29039849 29039982 -133559948 + FLAM_A SINE Alu 1 133 0 384 223 85 0 chrX 29040045 29040139 -133559791 - MER5A DNA MER1_type -77 112 11 180 374 48 41 chrX 29040235 29040382 -133559548 - L2 LINE L2 -4 3268 3121 1497 231 65 18 chrX 29040391 29040837 -133559093 + MER110A LTR ERV1 2 468 0 595 241 146 6 chrX 29041414 29041572 -133558358 + MER5A DNA MER1_type 9 188 -1 324 253 0 40 chrX 29041596 29041671 -133558259 - L2 LINE L2 -556 2758 2687 2070 118 0 40 chrX 29041807 29042128 -133557802 - AluSx SINE Alu 0 312 5 324 394 97 5 chrX 29042976 29043192 -133556738 + MIR SINE MIR 21 256 -6 333 258 55 10 chrX 29043440 29043576 -133556354 - MIR SINE MIR -7 201 48 1304 75 0 0 chrX 29043618 29043791 -133556139 + L1PA8 LINE L1 6000 6172 0 1756 99 107 33 chrX 29044188 29044460 -133555470 - AluSp SINE Alu -4 309 18 1149 300 77 11 chrX 29044515 29044981 -133554949 + L2 LINE L2 2201 2697 -617 1142 225 51 33 chrX 29045000 29045333 -133554597 + L1MD2 LINE L1 5911 6249 -110 618 207 28 45 chrX 29045333 29045512 -133554418 + L1MD2 LINE L1 6172 6347 -12 504 280 32 0 chrX 29045538 29045663 -133554267 + L2 LINE L2 2926 3054 -259 409 246 26 0 chrX 29045669 29045776 -133554154 + AluJ/FLAM SINE Alu 1 88 -214 10338 115 36 7 chrX 29045786 29047304 -133552626 + THE1C-int LTR MaLR 19 1580 0 2236 119 13 46 chrX 29047304 29047692 -133552238 + THE1C LTR MaLR 1 375 0 621 267 94 55 chrX 29047692 29047770 -133552160 + L2 LINE L2 2995 3068 -245 1652 195 3 13 chrX 29047770 29048083 -133551847 + AluJo SINE Alu 1 310 -2 621 267 94 55 chrX 29048083 29048311 -133551619 + L2 LINE L2 3068 3313 0 422 263 8 30 chrX 29048975 29049108 -133550822 + MIR SINE MIR 67 196 -66 180 97 0 0 chrX 29050138 29050169 -133549761 + (A)n Simple_repeat Simple_repeat 1 31 0 2116 126 0 3 chrX 29051786 29052072 -133547858 + AluSx SINE Alu 1 285 -27 30 0 0 0 chrX 29052072 29052102 -133547828 + AT_rich Low_complexity Low_complexity 1 30 0 243 254 56 42 chrX 29052131 29052202 -133547728 + LTR33A LTR ERVL 347 418 -105 321 195 13 39 chrX 29052351 29052428 -133547502 - MER20 DNA MER1_type -144 75 1 28 0 0 0 chrX 29052718 29052746 -133547184 + AT_rich Low_complexity Low_complexity 1 28 0 411 21 0 0 chrX 29054615 29054663 -133545267 + (TG)n Simple_repeat Simple_repeat 2 49 0 2298 82 0 0 chrX 29054938 29055219 -133544711 - AluSc SINE Alu -28 281 1 904 221 22 49 chrX 29055964 29056190 -133543740 + MER58A DNA MER1_type 4 223 -1 821 137 143 28 chrX 29056715 29056897 -133543033 + LTR12 LTR ERV1 1 203 -511 364 260 10 0 chrX 29056966 29057066 -133542864 + LTR30 LTR ERV1 524 624 -98 734 173 23 15 chrX 29057066 29057199 -133542731 + LTR12 LTR ERV1 359 492 -222 446 355 158 8 chrX 29057527 29057927 -133542003 + L2 LINE L2 2850 3309 -4 393 326 81 92 chrX 29058324 29059041 -133540889 + L2 LINE L2 2257 2965 -349 246 81 0 0 chrX 29059158 29059195 -133540735 + (TC)n Simple_repeat Simple_repeat 1 37 0 257 261 9 117 chrX 29059249 29059360 -133540570 + L2 LINE L2 3172 3270 -2 1622 210 26 47 chrX 29059885 29060375 -133539555 - L1MA9 LINE L1 -38 6274 5795 306 0 0 0 chrX 29060379 29060413 -133539517 + (TG)n Simple_repeat Simple_repeat 2 35 0 411 21 0 0 chrX 29060489 29060537 -133539393 + (TC)n Simple_repeat Simple_repeat 1 48 0 22 35 0 0 chrX 29060594 29060623 -133539307 + AT_rich Low_complexity Low_complexity 1 29 0 2262 132 8 48 chrX 29061185 29061564 -133538366 + THE1B LTR MaLR 1 364 0 2254 116 22 24 chrX 29062144 29062515 -133537415 - THE1C LTR MaLR -2 373 4 182 247 226 32 chrX 29064750 29064843 -133535087 - MIR SINE MIR -120 142 32 345 82 0 0 chrX 29065278 29065327 -133534603 + (TA)n Simple_repeat Simple_repeat 1 49 0 389 270 43 31 chrX 29065647 29065810 -133534120 - Charlie2 DNA MER1_type 0 2862 2698 2094 233 61 5 chrX 29065815 29066419 -133533511 - Charlie2 DNA MER1_type -360 2502 1865 704 211 51 120 chrX 29066437 29066712 -133533218 - Charlie2 DNA MER1_type -2606 256 1 281 286 66 0 chrX 29067002 29067093 -133532837 + MIR SINE MIR 35 131 -131 284 333 10 10 chrX 29067093 29067189 -133532741 - MER5B DNA MER1_type 0 178 83 339 350 51 45 chrX 29069861 29070175 -133529755 - L1 LINE L1 -835 5311 4996 758 209 0 13 chrX 29071136 29071289 -133528641 + MER58B DNA MER1_type 176 326 -15 323 353 18 50 chrX 29071324 29071542 -133528388 - MIR SINE MIR -26 236 26 592 41 0 0 chrX 29071609 29071682 -133528248 - L1PA5 LINE L1 -5 6149 6077 901 212 86 0 chrX 29071756 29071954 -133527976 + MER20 DNA MER1_type 1 215 -4 348 316 53 8 chrX 29072039 29072172 -133527758 + L2 LINE L2 3175 3313 0 207 0 0 0 chrX 29072275 29072298 -133527632 + (TA)n Simple_repeat Simple_repeat 1 23 0 763 337 67 22 chrX 29072673 29073077 -133526853 - L3 LINE CR1 -3 1574 1153 322 320 39 0 chrX 29073207 29073310 -133526620 - L2 LINE L2 -10 3303 3197 1689 178 33 6 chrX 29073313 29073644 -133526286 + MER2 DNA MER2_type 1 340 -5 2504 138 31 0 chrX 29074596 29075010 -133524920 + MSTA LTR MaLR 2 428 0 1134 222 61 33 chrX 29075907 29076268 -133523662 - L1ME2 LINE L1 -1 6163 5793 576 339 115 37 chrX 29076383 29077141 -133522789 - L2 LINE L2 -340 2974 2158 2510 55 0 7 chrX 29078417 29078726 -133521204 + AluY SINE Alu 1 307 -4 1508 115 0 21 chrX 29078889 29079132 -133520798 - L1MA2 LINE L1 0 6304 6067 22 56 0 0 chrX 29079390 29079426 -133520504 + AT_rich Low_complexity Low_complexity 1 36 0 1308 134 79 12 chrX 29079434 29079688 -133520242 - L1MA8 LINE L1 -10 6281 6011 778 196 86 121 chrX 29079998 29080451 -133519479 + LTR37B LTR ERV1 6 442 -26 1625 189 27 0 chrX 29081310 29081480 -133518450 - AluSx SINE Alu -7 305 122 207 0 0 0 chrX 29081480 29081503 -133518427 + (TG)n Simple_repeat Simple_repeat 2 24 0 1625 189 27 0 chrX 29081503 29081629 -133518301 - AluSx SINE Alu -190 122 1 736 232 131 0 chrX 29082282 29082541 -133517389 - MER33 DNA MER1_type -31 293 1 1704 154 67 26 chrX 29082733 29083045 -133516885 - MER44D DNA MER2_type 0 609 15 267 257 43 14 chrX 29083706 29083776 -133516154 + L2 LINE L2 3234 3305 -8 2335 92 0 0 chrX 29084020 29084323 -133515607 - AluSc SINE Alu -6 303 1 25 0 0 0 chrX 29085592 29085617 -133514313 + AT_rich Low_complexity Low_complexity 1 25 0 210 353 0 15 chrX 29085876 29085944 -133513986 + MIR SINE MIR 49 115 -147 1843 142 153 24 chrX 29086277 29086650 -133513280 - MSTB LTR MaLR 0 426 6 414 0 0 0 chrX 29086650 29086696 -133513234 + (TC)n Simple_repeat Simple_repeat 1 46 0 393 22 0 0 chrX 29086695 29086741 -133513189 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 306 209 132 44 chrX 29087311 29087402 -133512528 + L2 LINE L2 3171 3269 -3 240 111 0 0 chrX 29088051 29088096 -133511834 + (ATG)n Simple_repeat Simple_repeat 3 47 0 1175 214 165 26 chrX 29088835 29089181 -133510749 + MSTD LTR MaLR 1 394 -2 293 276 86 52 chrX 29090368 29090484 -133509446 + L2 LINE L2 3146 3265 -7 311 287 83 120 chrX 29090704 29091147 -133508783 - L2 LINE L2 0 3313 2887 274 229 136 34 chrX 29092393 29092511 -133507419 + LTR16C LTR ERVL 1 130 -361 415 324 183 14 chrX 29094088 29094301 -133505629 - MIR SINE MIR -11 251 3 2051 118 21 0 chrX 29095378 29095667 -133504263 + AluSq SINE Alu 1 295 -18 547 198 29 150 chrX 29095801 29096008 -133503922 + L1MEc LINE L1 168 349 -6214 3776 217 36 19 chrX 29096019 29096958 -133502972 + L1MEc LINE L1 466 1420 -5143 305 298 25 0 chrX 29096971 29097092 -133502838 + L1MEc LINE L1 1317 1440 -4944 303 306 12 0 chrX 29097094 29097179 -133502751 + LTR16A LTR ERVL 365 450 0 21 36 0 0 chrX 29097283 29097311 -133502619 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 29099064 29099085 -133500845 + AT_rich Low_complexity Low_complexity 1 21 0 1145 169 16 16 chrX 29099230 29099478 -133500452 + L1MA6 LINE L1 6050 6297 -3 279 189 27 0 chrX 29099478 29099552 -133500378 - L1MC5 LINE L1 -272 7689 7614 557 198 23 119 chrX 29099824 29100001 -133499929 + MER5B DNA MER1_type 19 178 0 483 282 64 50 chrX 29100301 29100521 -133499409 - MIR SINE MIR -6 256 34 26 0 0 0 chrX 29101198 29101224 -133498706 + AT_rich Low_complexity Low_complexity 1 26 0 275 324 0 0 chrX 29101696 29101770 -133498160 + MER115 DNA AcHobo 369 442 -251 23 0 0 0 chrX 29102325 29102348 -133497582 + AT_rich Low_complexity Low_complexity 1 23 0 215 278 0 19 chrX 29103151 29103205 -133496725 + MIR SINE MIR 154 206 -56 22 35 0 0 chrX 29103221 29103250 -133496680 + AT_rich Low_complexity Low_complexity 1 29 0 3973 132 4 45 chrX 29103254 29103937 -133495993 - L1PB3 LINE L1 -9 6145 5491 1339 214 21 0 chrX 29103937 29104268 -133495662 + L1 LINE L1 2962 3299 -2847 1094 220 101 46 chrX 29104781 29105127 -133494803 - MLT1A1 LTR MaLR 0 365 1 1049 272 23 66 chrX 29105128 29105565 -133494365 - L1ME LINE L1 -406 5764 5347 537 303 26 24 chrX 29105705 29106085 -133493845 - L1ME LINE L1 -804 5342 4962 33 0 0 0 chrX 29106249 29106282 -133493648 + AT_rich Low_complexity Low_complexity 1 33 0 289 341 152 41 chrX 29106790 29106842 -133493088 + L2 LINE L2 2172 2217 -1097 703 289 28 5 chrX 29106842 29107060 -133492870 - MER58A DNA MER1_type 0 224 2 289 341 152 41 chrX 29107060 29107208 -133492722 + L2 LINE L2 2217 2347 -967 2401 132 43 14 chrX 29107208 29107624 -133492306 + MSTA LTR MaLR 1 428 0 289 341 152 41 chrX 29107624 29107791 -133492139 + L2 LINE L2 2347 2581 -733 357 401 29 17 chrX 29108115 29108287 -133491643 + L2 LINE L2 3099 3272 0 273 317 42 17 chrX 29108323 29108443 -133491487 + MIR SINE MIR 66 188 -74 360 64 0 0 chrX 29108950 29108997 -133490933 + (TA)n Simple_repeat Simple_repeat 2 48 0 2145 154 11 5 chrX 29109032 29109402 -133490528 + L1PB4 LINE L1 5785 6156 0 346 295 23 23 chrX 29110566 29110695 -133489235 - MIR SINE MIR -30 232 104 1102 180 35 104 chrX 29111272 29111363 -133488567 - L1MA10 LINE L1 0 6334 6238 405 0 0 0 chrX 29111363 29111408 -133488522 + (TA)n Simple_repeat Simple_repeat 2 46 0 1102 180 35 104 chrX 29111408 29111661 -133488269 - L1MA10 LINE L1 -96 6238 6014 2312 52 0 3 chrX 29111906 29112226 -133487704 - AluY SINE Alu 0 319 1 511 301 107 15 chrX 29112320 29112526 -133487404 + MIR SINE MIR 21 245 -17 243 397 33 8 chrX 29114717 29114838 -133485092 - L2 LINE L2 0 3272 3149 366 310 54 23 chrX 29114872 29115001 -133484929 + LTR16C LTR ERVL 1 133 -358 1937 130 10 0 chrX 29115270 29115611 -133484319 - AluSp SINE Alu 0 313 1 402 250 152 0 chrX 29116102 29116214 -133483716 - MER5B DNA MER1_type -1 177 49 232 333 162 0 chrX 29116526 29116637 -133483293 - MIR SINE MIR -86 176 48 3351 136 4 9 chrX 29116657 29117187 -133482743 - MER1A DNA MER1_type 0 527 1 279 279 136 15 chrX 29117965 29118144 -133481786 - L1ME LINE L1 -536 5634 5411 2129 104 84 6 chrX 29118144 29118479 -133481451 + THE1B LTR MaLR 2 362 -2 279 279 136 15 chrX 29118479 29118564 -133481366 - L1ME LINE L1 -759 5411 5338 391 270 62 28 chrX 29118584 29118795 -133481135 - L1ME LINE L1 -823 5323 5106 23 0 0 0 chrX 29118829 29118852 -133481078 + AT_rich Low_complexity Low_complexity 1 23 0 564 305 69 0 chrX 29119011 29119214 -133480716 - HAL1 LINE L1 -547 1960 1744 804 301 33 64 chrX 29119217 29119636 -133480294 + MLT1I LTR MaLR 4 409 0 240 259 144 36 chrX 29119669 29119808 -133480122 - HAL1 LINE L1 -760 1747 1594 1217 251 97 65 chrX 29119808 29120346 -133479584 - MLT1F1 LTR MaLR 0 567 13 1426 231 84 109 chrX 29120377 29120700 -133479230 - HAL1 LINE L1 -937 1570 1241 660 277 79 0 chrX 29120700 29120902 -133479028 - MER20 DNA MER1_type 0 219 2 1426 231 84 109 chrX 29120902 29121028 -133478902 - HAL1 LINE L1 -1266 1241 1113 1823 153 0 19 chrX 29121028 29121349 -133478581 - L1MC1 LINE L1 -1 6332 6018 504 228 0 0 chrX 29121351 29121465 -133478465 + L1PB4 LINE L1 6041 6154 -2 1426 231 84 109 chrX 29121465 29121911 -133478019 - HAL1 LINE L1 -1395 1112 693 1862 171 53 4 chrX 29121911 29122257 -133477673 + MLT1A1 LTR MaLR 1 426 -2 573 319 55 44 chrX 29122330 29122694 -133477236 - HAL1 LINE L1 -1902 605 238 231 356 59 0 chrX 29122726 29122861 -133477069 - HAL1 LINE L1 -2364 143 1 392 177 8 31 chrX 29124596 29124726 -133475204 + GA-rich Low_complexity Low_complexity 4 130 0 243 146 0 0 chrX 29124736 29124777 -133475153 + (CAGG)n Simple_repeat Simple_repeat 1 41 0 983 210 139 0 chrX 29125172 29125439 -133474491 + MER63 DNA MER1_type 714 1017 -44 17479 28 0 0 chrX 29125637 29128492 -133471438 - L1PA2 LINE L1 -1 6154 3304 218 257 191 57 chrX 29128655 29128760 -133471170 + MER5B DNA MER1_type 60 178 0 389 238 29 91 chrX 29128809 29129019 -133470911 - L1MC5 LINE L1 -48 7913 7717 257 321 95 91 chrX 29129274 29129570 -133470360 + L2 LINE L2 2974 3270 -2 484 248 62 16 chrX 29131219 29131348 -133468582 - MIR SINE MIR -111 151 17 579 316 197 44 chrX 29132426 29132540 -133467390 + L2 LINE L2 2009 2104 -1209 2630 55 3 6 chrX 29132540 29132885 -133467045 + L1PA7 LINE L1 5811 6154 0 579 316 197 44 chrX 29132885 29133369 -133466561 + L2 LINE L2 2104 2512 -801 1438 182 0 84 chrX 29133369 29133704 -133466226 + AluJo SINE Alu 2 308 -4 579 316 197 44 chrX 29133704 29134165 -133465765 + L2 LINE L2 2512 3245 -68 1029 119 0 0 chrX 29134264 29134557 -133465373 + (TA)n Simple_repeat Simple_repeat 1 294 0 382 260 6 0 chrX 29134559 29134671 -133465259 + L1MC4 LINE L1 6613 6705 -1337 2305 99 0 0 chrX 29135306 29135600 -133464330 - AluSg SINE Alu -14 296 3 2156 126 0 0 chrX 29135720 29136022 -133463908 - AluSx SINE Alu -10 302 1 2136 173 154 21 chrX 29136510 29137037 -133462893 - L1MB3 LINE L1 -1 6182 5586 948 181 0 44 chrX 29137047 29137229 -133462701 + MER58B DNA MER1_type 168 341 0 5765 100 6 36 chrX 29137722 29138628 -133461302 - L1P LINE L1 -3553 2593 1716 7338 110 6 0 chrX 29138631 29140504 -133459426 + L1PA7 LINE L1 4276 6152 -2 24 0 0 0 chrX 29141226 29141250 -133458680 + AT_rich Low_complexity Low_complexity 1 24 0 350 251 90 33 chrX 29141904 29142079 -133457851 + MLT1J2 LTR MaLR 246 432 -14 31 0 0 0 chrX 29143591 29143622 -133456308 + AT_rich Low_complexity Low_complexity 1 31 0 385 239 15 45 chrX 29143912 29144046 -133455884 + L1ME1 LINE L1 5872 6001 -165 638 203 14 0 chrX 29144065 29144213 -133455717 + L1MA10 LINE L1 6185 6334 0 882 341 36 30 chrX 29144307 29144747 -133455183 + LTR16A LTR ERVL 2 444 -6 25 0 0 0 chrX 29145542 29145567 -133454363 + AT_rich Low_complexity Low_complexity 1 25 0 2478 115 13 11 chrX 29145703 29146077 -133453853 + THE1C LTR MaLR 1 375 0 9785 109 28 63 chrX 29146077 29147715 -133452215 + THE1C-int LTR MaLR 1 1580 0 2576 104 13 13 chrX 29147715 29148090 -133451840 + THE1C LTR MaLR 1 375 0 1377 278 23 45 chrX 29149874 29150345 -133449585 + LTR16C LTR ERVL 31 491 0 4047 159 20 20 chrX 29150539 29151250 -133448680 + MER50 LTR ERV1 1 711 -23 310 364 21 7 chrX 29152237 29152377 -133447553 + MLT1J LTR MaLR 100 241 -308 222 118 0 0 chrX 29153305 29153339 -133446591 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 281 268 235 20 chrX 29154284 29154437 -133445493 + MIR SINE MIR 48 233 -29 249 33 0 0 chrX 29154959 29154989 -133444941 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 565 239 60 0 chrX 29154992 29155126 -133444804 + FLAM_A SINE Alu 1 142 0 753 246 107 48 chrX 29155155 29155444 -133444486 + MLT1J LTR MaLR 9 314 -197 366 304 9 0 chrX 29155506 29155621 -133444309 + MLT1J LTR MaLR 394 509 -2 21 0 0 0 chrX 29157233 29157254 -133442676 + AT_rich Low_complexity Low_complexity 1 21 0 3966 223 10 12 chrX 29157473 29158292 -133441638 + L1MA2 LINE L1 12 828 -6737 1991 158 0 0 chrX 29158321 29158625 -133441305 + AluSx SINE Alu 3 306 -6 185 94 31 0 chrX 29158630 29158662 -133441268 + A-rich Low_complexity Low_complexity 3 35 0 5596 206 19 30 chrX 29158664 29160056 -133439874 + L1MA2 LINE L1 3598 4973 -2592 1682 25 0 0 chrX 29160110 29160352 -133439578 + L1P1 LINE L1 5190 5431 -724 * 6739 128 17 5 chrX 29160342 29161634 -133438296 + L1MA2 LINE L1 6405 7713 -10 586 127 0 66 chrX 29161688 29161869 -133438061 + (TA)n Simple_repeat Simple_repeat 1 169 0 807 246 70 18 chrX 29163116 29163400 -133436530 - L1ME3A LINE L1 -9 6161 5863 282 349 55 0 chrX 29164437 29164546 -133435384 + MIR3 SINE MIR 73 187 -21 350 286 27 9 chrX 29164594 29164706 -133435224 + MLT1I LTR MaLR 20 133 -276 250 307 35 44 chrX 29164883 29164997 -133434933 + MLT1J LTR MaLR 421 533 -16 965 261 9 0 chrX 29165343 29165565 -133434365 + MER58A DNA MER1_type 1 224 0 181 209 90 30 chrX 29166061 29166128 -133433802 + L2 LINE L2 3141 3211 -61 671 308 42 8 chrX 29166207 29166444 -133433486 - MIR SINE MIR -3 259 15 692 203 47 14 chrX 29167102 29167250 -133432680 - FRAM SINE Alu -15 161 9 2013 122 4 0 chrX 29167376 29167677 -133432253 - AluSx SINE Alu 0 305 4 262 306 126 9 chrX 29167765 29167876 -133432054 - L2 LINE L2 -23 3290 3167 192 289 0 19 chrX 29168048 29168100 -133431830 - L2 LINE L2 -226 3046 2996 2136 260 130 43 chrX 29169528 29170359 -133429571 + L2 LINE L2 1897 2799 -515 4891 85 43 34 chrX 29170359 29171097 -133428833 + MER41B-int LTR ERV1 5202 5946 0 3539 117 13 9 chrX 29171097 29171643 -133428287 + MER41B LTR ERV1 1 548 -87 777 330 119 25 chrX 29171648 29172145 -133427785 + L2 LINE L2 2771 3313 0 541 232 84 71 chrX 29172897 29173194 -133426736 - L1MC5 LINE L1 -50 7911 7611 266 272 60 86 chrX 29173225 29173493 -133426437 - L2 LINE L2 -793 2521 2261 2141 59 0 26 chrX 29173979 29174252 -133425678 - AluY SINE Alu -8 303 38 811 114 9 0 chrX 29175399 29175513 -133424417 + L1PA16 LINE L1 6033 6147 -19 211 194 0 0 chrX 29176095 29176131 -133423799 + (TG)n Simple_repeat Simple_repeat 2 37 0 2181 104 3 0 chrX 29177792 29178080 -133421850 + AluSq SINE Alu 1 289 -24 1911 283 66 37 chrX 29178864 29178918 -133421012 - L2 LINE L2 0 3313 3262 446 0 19 0 chrX 29178918 29178972 -133420958 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2127 93 4 4 chrX 29178974 29179254 -133420676 - AluSg SINE Alu -30 280 1 1911 283 66 37 chrX 29179254 29180263 -133419667 - L2 LINE L2 -51 3262 2224 712 305 61 4 chrX 29181265 29181511 -133418419 + MIR SINE MIR 1 260 -2 249 119 0 0 chrX 29182906 29182948 -133416982 + (A)n Simple_repeat Simple_repeat 1 42 0 1748 173 106 3 chrX 29183772 29184101 -133415829 + MER47A DNA MER2_type 1 363 -3 201 301 41 68 chrX 29184451 29184597 -133415333 - MIR SINE MIR -37 225 84 331 308 11 0 chrX 29184988 29185079 -133414851 - L2 LINE L2 0 3313 3222 1178 285 98 34 chrX 29187191 29187949 -133411981 + L2 LINE L2 2513 3313 0 202 235 0 19 chrX 29188304 29188414 -133411516 + CT-rich Low_complexity Low_complexity 1 107 0 424 280 42 14 chrX 29188414 29188557 -133411373 - L1M4 LINE L1 -1984 4162 4016 616 342 112 14 chrX 29188800 29189221 -133410709 - LTR16C LTR ERVL 0 491 30 207 100 0 0 chrX 29189760 29189790 -133410140 + (TA)n Simple_repeat Simple_repeat 2 31 0 14444 91 34 0 chrX 29194310 29197212 -133402718 + L1PA7 LINE L1 3187 6154 0 309 177 135 21 chrX 29197553 29197649 -133402281 - L1MA1 LINE L1 -312 5990 5884 222 220 20 0 chrX 29201067 29201117 -133398813 + L2 LINE L2 3263 3313 0 277 259 59 0 chrX 29201479 29201564 -133398366 - MER103 DNA DNA -59 107 18 809 214 39 34 chrX 29202039 29202245 -133397685 - MER3 DNA MER1_type -1 208 2 180 0 0 0 chrX 29203348 29203368 -133396562 + (CAA)n Simple_repeat Simple_repeat 2 21 0 647 275 42 108 chrX 29203474 29203972 -133395958 + HAL1 LINE L1 903 1346 -1161 1494 188 7 14 chrX 29203972 29204282 -133395648 + AluJo SINE Alu 9 316 0 647 275 42 108 chrX 29204282 29204470 -133395460 + HAL1 LINE L1 1346 1545 -962 1829 186 21 3 chrX 29204683 29205021 -133394909 - MER2 DNA MER2_type 0 344 1 23 33 0 0 chrX 29205193 29205223 -133394707 + AT_rich Low_complexity Low_complexity 1 30 0 1911 127 22 6 chrX 29205657 29205979 -133393951 + L1MA4A LINE L1 5972 6298 -5 380 355 24 24 chrX 29206168 29206458 -133393472 + L1M4 LINE L1 2318 2607 -3539 802 78 0 0 chrX 29207489 29207592 -133392338 - AluSg/x SINE Alu -10 302 200 2086 117 0 7 chrX 29208310 29208609 -133391321 + AluSx SINE Alu 1 297 -15 180 179 0 0 chrX 29208693 29208732 -133391198 + CT-rich Low_complexity Low_complexity 3 41 0 22 0 0 0 chrX 29209608 29209630 -133390300 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chrX 29210711 29210736 -133389194 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 603 326 51 43 chrX 29210744 29211158 -133388772 - L2 LINE L2 -20 3293 2877 247 208 0 0 chrX 29212422 29212470 -133387460 + L2 LINE L2 3224 3271 -1 495 316 146 40 chrX 29213879 29214101 -133385829 - L2 LINE L2 -1 3312 3115 299 25 25 0 chrX 29214101 29214141 -133385789 + (TG)n Simple_repeat Simple_repeat 1 41 0 495 316 146 40 chrX 29214141 29214526 -133385404 - L2 LINE L2 -198 3115 2646 344 299 84 13 chrX 29214604 29214758 -133385172 - L2 LINE L2 -1108 2206 2042 379 323 48 33 chrX 29214870 29215155 -133384775 - L1MEc LINE L1 -857 1719 1535 24 32 0 0 chrX 29215627 29215658 -133384272 + AT_rich Low_complexity Low_complexity 1 31 0 305 277 89 9 chrX 29216477 29216589 -133383341 - MER103 DNA DNA -45 121 1 333 323 71 13 chrX 29216634 29216789 -133383141 + MIR SINE MIR 49 212 -50 904 184 6 0 chrX 29216896 29217059 -133382871 - AluSg/x SINE Alu -19 293 130 446 157 63 0 chrX 29217059 29217218 -133382712 + (TA)n Simple_repeat Simple_repeat 2 170 0 314 131 62 35 chrX 29217311 29217456 -133382474 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 214 194 83 0 chrX 29217462 29217534 -133382396 + (TA)n Simple_repeat Simple_repeat 1 78 0 413 206 71 24 chrX 29217570 29217740 -133382190 + (TA)n Simple_repeat Simple_repeat 1 178 0 318 217 50 50 chrX 29217744 29217905 -133382025 + (TATATG)n Simple_repeat Simple_repeat 2 162 0 628 112 20 0 chrX 29217905 29218003 -133381927 - AluS SINE Alu -213 100 1 561 311 153 43 chrX 29218460 29219086 -133380844 - L2 LINE L2 -338 2976 2282 274 278 121 60 chrX 29219615 29219863 -133380067 - L1MEc LINE L1 -4641 1755 1493 288 291 221 17 chrX 29220789 29220961 -133378969 - MIR SINE MIR -50 212 6 192 200 0 0 chrX 29221797 29221842 -133378088 + (CCTA)n Simple_repeat Simple_repeat 1 45 0 198 74 0 0 chrX 29222131 29222158 -133377772 - L2 LINE L2 -13 3300 3274 250 253 25 25 chrX 29222823 29222902 -133377028 - MER116 DNA Mariner -1 79 1 22 35 0 0 chrX 29229770 29229799 -133370131 + AT_rich Low_complexity Low_complexity 1 29 0 854 271 102 0 chrX 29232607 29232832 -133367098 + MIR SINE MIR 15 262 0 213 267 151 48 chrX 29232942 29233088 -133366842 + L3 LINE CR1 371 531 -1046 307 292 10 10 chrX 29233710 29233806 -133366124 + L3 LINE CR1 1285 1380 -197 833 234 117 3 chrX 29233994 29234284 -133365646 - MER33 DNA MER1_type -1 323 1 26 74 0 0 chrX 29236223 29236277 -133363653 + AT_rich Low_complexity Low_complexity 1 54 0 27 0 0 0 chrX 29236298 29236325 -133363605 + AT_rich Low_complexity Low_complexity 1 27 0 210 298 0 0 chrX 29236762 29236819 -133363111 + CT-rich Low_complexity Low_complexity 4 60 0 30 27 0 0 chrX 29237598 29237635 -133362295 + AT_rich Low_complexity Low_complexity 1 37 0 243 0 0 0 chrX 29238067 29238094 -133361836 + (A)n Simple_repeat Simple_repeat 1 27 0 2169 103 3 7 chrX 29238574 29238876 -133361054 - AluSx SINE Alu -11 301 1 776 219 7 0 chrX 29239008 29239024 -133360906 + MER5A DNA MER1_type 1 17 -172 292 307 49 43 chrX 29239024 29239187 -133360743 - MER5A DNA MER1_type -2 187 24 233 379 21 0 chrX 29239181 29239276 -133360654 + L2 LINE L2 2537 2633 -681 * 375 60 0 0 chrX 29239337 29239387 -133360543 + (CA)n Simple_repeat Simple_repeat 1 50 0 309 284 46 72 chrX 29240584 29240804 -133359126 - MIR SINE MIR -46 216 4 68 24 0 0 chrX 29241532 29241614 -133358316 + AT_rich Low_complexity Low_complexity 1 82 0 1866 130 4 0 chrX 29242193 29242469 -133357461 + AluSx SINE Alu 1 277 -35 261 0 0 0 chrX 29242488 29242517 -133357413 + (TAA)n Simple_repeat Simple_repeat 2 30 0 237 119 0 0 chrX 29244251 29244293 -133355637 + (GA)n Simple_repeat Simple_repeat 1 42 0 322 241 11 0 chrX 29244699 29244786 -133355144 + GA-rich Low_complexity Low_complexity 2 89 0 240 208 21 0 chrX 29246118 29246166 -133353764 + GA-rich Low_complexity Low_complexity 3 51 0 23 33 0 0 chrX 29246542 29246572 -133353358 + AT_rich Low_complexity Low_complexity 1 30 0 32 81 0 0 chrX 29247099 29247173 -133352757 + AT_rich Low_complexity Low_complexity 1 74 0 1717 227 45 18 chrX 29247269 29247763 -133352167 - Charlie4a DNA MER1_type 0 508 2 261 381 122 0 chrX 29248794 29248933 -133350997 - MER91A DNA MER1_type -37 159 4 188 300 125 25 chrX 29248933 29249001 -133350929 - L2 LINE L2 -48 3265 3190 337 221 0 0 chrX 29249144 29249221 -133350709 + HsTC2 DNA Tc2 222 298 -1600 274 279 25 0 chrX 29249223 29249302 -133350628 + HsTC2 DNA Tc2 492 572 -1326 306 269 32 86 chrX 29251808 29251994 -133347936 + MER104 DNA Tc2 1 176 -4 567 200 0 10 chrX 29252677 29252777 -133347153 + MER5B DNA MER1_type 78 176 -2 313 323 0 0 chrX 29253929 29254028 -133345902 - L2 LINE L2 -9 3304 3206 1271 255 43 6 chrX 29255072 29255401 -133344529 - MER58B DNA MER1_type 0 341 1 3394 196 10 6 chrX 29255645 29256509 -133343421 - L1P4 LINE L1 -665 5501 4635 381 130 29 0 chrX 29256509 29256576 -133343354 + L1PA16 LINE L1 6093 6163 -3 1894 137 20 3 chrX 29257685 29257985 -133341945 + AluSq SINE Alu 1 305 -8 493 160 0 11 chrX 29259440 29259534 -133340396 + L1MA3 LINE L1 6213 6305 0 33 0 0 0 chrX 29259808 29259841 -133340089 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chrX 29260090 29260117 -133339813 + AT_rich Low_complexity Low_complexity 1 27 0 29 47 0 0 chrX 29260325 29260368 -133339562 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chrX 29262484 29262517 -133337413 + AT_rich Low_complexity Low_complexity 1 33 0 204 97 0 0 chrX 29264047 29264078 -133335852 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chrX 29264805 29264826 -133335104 + AT_rich Low_complexity Low_complexity 1 21 0 309 292 114 0 chrX 29264840 29264991 -133334939 + MLT1A2 LTR MaLR 188 379 -11 27 0 0 0 chrX 29265788 29265815 -133334115 + AT_rich Low_complexity Low_complexity 1 27 0 3583 177 20 4 chrX 29266605 29267301 -133332629 + L1 LINE L1 4503 5209 -937 231 232 0 0 chrX 29267819 29267875 -133332055 + L1MC4 LINE L1 6648 6703 -1339 381 323 0 24 chrX 29268533 29268660 -133331270 - L2 LINE L2 0 3313 3190 241 158 0 0 chrX 29268905 29268943 -133330987 - tRNA-Gly-GGA tRNA tRNA -37 38 1 251 320 0 0 chrX 29268994 29269069 -133330861 + (TATG)n Simple_repeat Simple_repeat 2 76 0 21 82 0 0 chrX 29270236 29270285 -133329645 + AT_rich Low_complexity Low_complexity 1 49 0 250 283 17 0 chrX 29270707 29270767 -133329163 + MIR SINE MIR 32 92 -170 21 57 0 0 chrX 29270924 29270959 -133328971 + AT_rich Low_complexity Low_complexity 1 35 0 445 162 0 0 chrX 29271997 29272065 -133327865 + AluS SINE Alu 1 68 -245 216 0 0 0 chrX 29272364 29272388 -133327542 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 670 193 0 0 chrX 29272388 29272507 -133327423 - FLAM_C SINE Alu -24 119 1 2077 118 0 3 chrX 29273930 29274247 -133325683 - AluSx SINE Alu 0 316 1 774 263 132 63 chrX 29274248 29274753 -133325177 + MLT1G1 LTR MaLR 5 504 -63 188 314 118 29 chrX 29276022 29276124 -133323806 + MIR SINE MIR 47 157 -105 261 98 0 0 chrX 29276589 29276630 -133323300 + (A)n Simple_repeat Simple_repeat 1 41 0 231 244 221 16 chrX 29276674 29276801 -133323129 - MIR SINE MIR -44 218 66 1404 55 0 11 chrX 29277085 29277268 -133322662 + L1PA5 LINE L1 5968 6148 -6 501 255 59 7 chrX 29277535 29277688 -133322242 + MER69A DNA AcHobo 2 162 -15 271 234 170 0 chrX 29278173 29278267 -133321663 + MER103 DNA DNA 8 117 -49 22 70 0 0 chrX 29278369 29278412 -133321518 + AT_rich Low_complexity Low_complexity 1 43 0 3777 159 21 5 chrX 29280380 29281560 -133318370 + L1MA2 LINE L1 4585 5782 -523 * 5794 46 0 0 chrX 29281541 29282245 -133317685 - L1P LINE L1 -1890 4256 3553 6586 32 0 0 chrX 29282245 29283030 -133316900 + L1PA3 LINE L1 5367 6153 -2 3077 128 31 4 chrX 29283030 29283549 -133316381 + L1MA2 LINE L1 5769 6304 0 386 262 86 27 chrX 29284023 29284210 -133315720 - L1MB8 LINE L1 -16 6162 5965 207 305 12 49 chrX 29284582 29284664 -133315266 + L2 LINE L2 3158 3236 -36 327 87 0 0 chrX 29285031 29285077 -133314853 + MADE1 DNA Mariner 1 46 -34 184 299 45 15 chrX 29286827 29286894 -133313036 + MER5B DNA MER1_type 7 75 -103 9068 39 0 0 chrX 29287308 29288410 -133311520 - L1P LINE L1 -1362 4784 3683 7466 25 9 0 chrX 29288410 29289818 -133310112 + L1PA4 LINE L1 4739 6154 -1 519 101 0 0 chrX 29290553 29290632 -133309298 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 551 116 9 62 chrX 29291583 29291695 -133308235 + L1MA4A LINE L1 6190 6295 -8 258 176 0 40 chrX 29291788 29291862 -133308068 + L1MA4 LINE L1 6229 6299 -1 2207 104 7 0 chrX 29292818 29293116 -133306814 - AluSg SINE Alu -10 300 1 421 299 104 94 chrX 29294791 29295395 -133304535 + L2 LINE L2 2186 2801 -513 2162 112 0 19 chrX 29295395 29295708 -133304222 - AluSx SINE Alu -5 307 1 421 299 104 94 chrX 29295708 29295881 -133304049 + L2 LINE L2 2801 2971 -343 486 217 43 0 chrX 29296012 29296127 -133303803 - L1MA8 LINE L1 -2 6289 6170 205 309 10 41 chrX 29296181 29296278 -133303652 + L2 LINE L2 3175 3268 -45 207 0 0 0 chrX 29299510 29299533 -133300397 + (CA)n Simple_repeat Simple_repeat 2 24 0 1875 91 0 0 chrX 29300447 29300689 -133299241 + AluY SINE Alu 69 310 -1 225 266 106 32 chrX 29303932 29304026 -133295904 + MER5A DNA MER1_type 16 116 -73 201 237 0 0 chrX 29305138 29305197 -133294733 + (TA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chrX 29305522 29305544 -133294386 + AT_rich Low_complexity Low_complexity 1 22 0 782 239 24 0 chrX 29306235 29306402 -133293528 + MER45A DNA AcHobo 8 178 0 5159 159 38 11 chrX 29307379 29308798 -133291132 + L1PA15 LINE L1 4696 6149 -16 902 283 52 15 chrX 29308845 29309170 -133290760 - L2 LINE L2 -825 2489 2153 619 310 129 34 chrX 29309191 29309979 -133289951 - L1MDa LINE L1 -2369 3760 2862 462 319 132 6 chrX 29310189 29310304 -133289626 - L1MDa LINE L1 -3585 2544 2445 1964 136 10 0 chrX 29310304 29310599 -133289331 - AluSx SINE Alu -14 298 1 462 319 132 6 chrX 29310599 29310825 -133289105 - L1MDa LINE L1 -3684 2445 2160 1416 131 86 96 chrX 29310870 29311201 -133288729 - AluSq SINE Alu 0 328 1 479 291 90 19 chrX 29311655 29312088 -133287842 - L1MDa LINE L1 -4535 1594 1131 4689 197 12 21 chrX 29312098 29313138 -133286792 - L1MA10 LINE L1 -30 6304 5274 379 307 43 64 chrX 29313314 29313734 -133286196 - L1MDa LINE L1 -5180 939 529 250 255 0 113 chrX 29315050 29315083 -133284847 + MIR SINE MIR 132 167 -95 2226 114 0 0 chrX 29315083 29315391 -133284539 + AluSx SINE Alu 1 308 -4 250 255 0 113 chrX 29315391 29315463 -133284467 + MIR SINE MIR 167 225 -37 899 120 0 0 chrX 29315994 29316127 -133283803 + AluSg/x SINE Alu 180 312 0 372 163 0 0 chrX 29316899 29316985 -133282945 + (TA)n Simple_repeat Simple_repeat 2 87 0 240 261 274 45 chrX 29317088 29317245 -133282685 - MIR SINE MIR -13 249 57 474 204 217 0 chrX 29317245 29317397 -133282533 + LTR41 LTR ERVL 3 187 -586 418 197 0 71 chrX 29317919 29318046 -133281884 + LTR41 LTR ERVL 650 767 -6 1520 167 4 7 chrX 29318385 29318654 -133281276 + AluJb SINE Alu 29 296 -16 205 254 28 28 chrX 29319730 29319801 -133280129 + MIR SINE MIR 158 228 -34 518 411 21 7 chrX 29321634 29321916 -133278014 - L3 LINE CR1 -374 1203 918 238 267 93 23 chrX 29322002 29322088 -133277842 + MIR3 SINE MIR 108 199 -9 375 281 119 32 chrX 29323374 29323719 -133276211 - L1ME4a LINE L1 -174 5947 5573 832 301 81 17 chrX 29323743 29324561 -133275369 + L1ME2 LINE L1 5016 5883 -281 279 278 29 54 chrX 29327639 29327844 -133272086 + L1MEc LINE L1 984 1183 -4936 397 327 149 33 chrX 29327948 29328552 -133271378 + L1MEc LINE L1 1320 1991 -826 198 378 0 0 chrX 29328995 29329069 -133270861 + L2 LINE L2 3195 3268 -4 643 315 50 5 chrX 29329867 29330086 -133269844 - MIR SINE MIR -25 237 9 2202 222 52 16 chrX 29330851 29331405 -133268525 + MER90 LTR ERV1 2 575 0 923 296 68 38 chrX 29331465 29331938 -133267992 - LTR16C LTR ERVL -4 487 1 321 306 16 75 chrX 29332177 29332363 -133267567 - MIR SINE MIR -4 258 84 688 239 0 25 chrX 29332790 29332990 -133266940 + MER5A DNA MER1_type 3 189 0 22 0 0 0 chrX 29333081 29333103 -133266827 + AT_rich Low_complexity Low_complexity 1 22 0 943 41 0 86 chrX 29333964 29334212 -133265718 + (GGAAA)n Simple_repeat Simple_repeat 1 226 0 406 303 0 42 chrX 29334241 29334382 -133265548 + MIR3 SINE MIR 57 193 -15 483 305 64 84 chrX 29334603 29334996 -133264934 + L2 LINE L2 2925 3309 -4 242 157 0 0 chrX 29335073 29335124 -133264806 - L1MA4A LINE L1 -7 6296 6246 21 0 0 0 chrX 29335232 29335253 -133264677 + AT_rich Low_complexity Low_complexity 1 21 0 419 351 90 5 chrX 29335276 29335487 -133264443 - MIR SINE MIR 0 262 34 25 0 0 0 chrX 29336204 29336229 -133263701 + AT_rich Low_complexity Low_complexity 1 25 0 244 241 0 0 chrX 29336289 29336347 -133263583 + T-rich Low_complexity Low_complexity 1 58 0 336 294 147 42 chrX 29336947 29337512 -133262418 + L1MC4a LINE L1 5276 5899 -1909 483 18 0 0 chrX 29338266 29338322 -133261608 + (TG)n Simple_repeat Simple_repeat 1 56 0 2196 273 150 39 chrX 29338336 29339445 -133260485 - L2 LINE L2 -752 2562 1331 622 360 29 0 chrX 29339669 29339911 -133260019 - MIR SINE MIR -5 257 9 3368 166 31 23 chrX 29339938 29340634 -133259296 - L1MA10 LINE L1 -403 5909 5207 1871 174 27 37 chrX 29340635 29341042 -133258888 + L1MA10 LINE L1 5932 6334 0 591 176 0 0 chrX 29341557 29341659 -133258271 - L1MA9 LINE L1 -884 5262 5161 1520 154 25 3 chrX 29341735 29342020 -133257910 + L1M2 LINE L1 5314 5604 -693 359 308 179 48 chrX 29342057 29342637 -133257293 + L2 LINE L2 2599 3239 -74 21 36 0 0 chrX 29343481 29343509 -133256421 + AT_rich Low_complexity Low_complexity 1 28 0 1318 184 132 16 chrX 29343793 29344097 -133255833 - MER44D DNA MER2_type 0 609 1 1737 174 0 13 chrX 29344361 29344666 -133255264 + AluJo SINE Alu 1 301 -11 900 209 0 68 chrX 29345976 29346211 -133253719 - MER20 DNA MER1_type 0 219 1 23 33 0 0 chrX 29347128 29347158 -133252772 + AT_rich Low_complexity Low_complexity 1 30 0 2188 118 0 3 chrX 29347263 29347569 -133252361 - AluSc SINE Alu -2 307 3 1847 199 40 86 chrX 29348135 29348658 -133251272 + MLT1D LTR MaLR 7 505 0 193 279 0 0 chrX 29348667 29348710 -133251220 + L2 LINE L2 3183 3225 -88 240 181 64 21 chrX 29349211 29349305 -133250625 + (TA)n Simple_repeat Simple_repeat 1 98 0 253 218 115 0 chrX 29349312 29349390 -133250540 - L1MC4 LINE L1 -1342 6700 6614 890 236 10 10 chrX 29349391 29349590 -133250340 + MLT1D LTR MaLR 307 505 0 21 0 0 0 chrX 29350918 29350939 -133248991 + AT_rich Low_complexity Low_complexity 1 21 0 227 161 0 36 chrX 29351379 29351435 -133248495 - L1ME LINE L1 -260 5861 5808 251 191 16 16 chrX 29351511 29351574 -133248356 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 27 29 0 0 chrX 29352022 29352056 -133247874 + AT_rich Low_complexity Low_complexity 1 34 0 2149 104 3 7 chrX 29352682 29352979 -133246951 + AluSq SINE Alu 1 296 -17 1705 198 27 0 chrX 29353144 29353478 -133246452 - MER2 DNA MER2_type -1 343 1 185 322 107 33 chrX 29354156 29354277 -133245653 - MIR SINE MIR -25 237 108 267 262 19 16 chrX 29354280 29354391 -133245539 - MIR SINE MIR -78 130 19 183 80 0 0 chrX 29354735 29354760 -133245170 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 229 291 69 11 chrX 29354872 29355047 -133244883 + L1MEc LINE L1 1017 1201 -5195 5825 165 18 14 chrX 29355523 29355884 -133244046 - L1PB1 LINE L1 -1 6150 5792 300 91 0 0 chrX 29355884 29355928 -133244002 + (CA)n Simple_repeat Simple_repeat 2 45 0 5825 165 18 14 chrX 29355928 29357625 -133242305 - L1PB1 LINE L1 -359 5792 4093 203 305 0 0 chrX 29359164 29359223 -133240707 + GA-rich Low_complexity Low_complexity 3 61 0 528 248 43 7 chrX 29359510 29359651 -133240279 + MER33 DNA MER1_type 1 146 -178 397 150 110 20 chrX 29359684 29359784 -133240146 + MER33 DNA MER1_type 215 323 -1 2411 180 17 19 chrX 29360833 29361350 -133238580 - L1MA7 LINE L1 0 6291 5776 602 190 30 10 chrX 29361410 29361566 -133238364 - L1MC/D LINE L1 -545 5789 5693 * 1850 143 21 13 chrX 29361565 29362043 -133237887 + L1M2 LINE L1 5110 5591 -700 255 61 0 0 chrX 29362062 29362095 -133237835 + (TG)n Simple_repeat Simple_repeat 2 34 0 375 315 34 0 chrX 29362096 29362294 -133237636 + (TATG)n Simple_repeat Simple_repeat 1 204 0 230 275 22 22 chrX 29362302 29362393 -133237537 - L1MC4 LINE L1 -1338 6704 6614 47 19 0 0 chrX 29362640 29362694 -133237236 + AT_rich Low_complexity Low_complexity 1 54 0 328 369 131 24 chrX 29362956 29363593 -133236337 + L2 LINE L2 2552 3264 -8 1734 184 4 1 chrX 29363990 29364329 -133235601 - L1MB8 LINE L1 -173 6005 5667 207 0 0 0 chrX 29365508 29365531 -133234399 + (A)n Simple_repeat Simple_repeat 1 23 0 191 243 20 7 chrX 29367217 29367365 -133232565 + (TA)n Simple_repeat Simple_repeat 1 150 0 2177 108 13 3 chrX 29367422 29367728 -133232202 - AluSq SINE Alu -4 309 1 463 216 0 10 chrX 29367756 29367853 -133232077 - MER94 DNA DNA -34 100 5 835 199 74 61 chrX 29367862 29368159 -133231771 + MER33 DNA MER1_type 21 321 -3 5934 30 1 0 chrX 29368159 29368884 -133231046 + L1P LINE L1 4612 5337 -809 213 347 50 33 chrX 29370603 29370724 -133229206 + L2 LINE L2 2942 3064 -249 911 213 72 61 chrX 29370903 29371348 -133228582 + MLT1B LTR MaLR 1 390 0 265 160 20 0 chrX 29371651 29371701 -133228229 + L1PA14 LINE L1 5860 5910 -251 295 186 157 0 chrX 29372108 29372178 -133227752 + LTR33 LTR ERVL 9 89 -432 29 60 0 0 chrX 29373444 29373494 -133226436 + AT_rich Low_complexity Low_complexity 1 50 0 2239 64 4 0 chrX 29373745 29374026 -133225904 + AluY SINE Alu 1 282 -29 620 317 53 28 chrX 29376101 29376344 -133223586 + MIR SINE MIR 3 254 -8 634 171 0 0 chrX 29376572 29376683 -133223247 + FRAM SINE Alu 57 167 -9 23 33 0 0 chrX 29377388 29377418 -133222512 + AT_rich Low_complexity Low_complexity 1 30 0 25 90 0 0 chrX 29379632 29379699 -133220231 + AT_rich Low_complexity Low_complexity 1 67 0 205 255 20 0 chrX 29381954 29382005 -133217925 - L2 LINE L2 -10 3303 3252 742 207 9 68 chrX 29384545 29384767 -133215163 + MER3 DNA MER1_type 1 209 0 1287 198 0 30 chrX 29384807 29385075 -133214855 + AluJo SINE Alu 21 280 -32 2118 86 33 43 chrX 29385240 29385544 -133214386 - AluSg SINE Alu -9 301 1 1068 239 19 0 chrX 29385586 29385849 -133214081 + L1MC1 LINE L1 4706 4973 -1173 2275 104 0 10 chrX 29386029 29386337 -133213593 + AluSx SINE Alu 1 305 -7 905 155 140 10 chrX 29386393 29386593 -133213337 + L1PA16 LINE L1 5941 6166 0 5835 179 23 22 chrX 29386693 29388047 -133211883 + L1MC1 LINE L1 4981 6331 -2 403 125 28 14 chrX 29389297 29389369 -133210561 - MIR SINE MIR -84 178 106 271 348 36 22 chrX 29389507 29389645 -133210285 - MIR3 SINE MIR -65 143 4 326 285 72 102 chrX 29389844 29390149 -133209781 + L3 LINE CR1 944 1239 -338 355 291 71 8 chrX 29390195 29390322 -133209608 + MIR SINE MIR 57 191 -71 2457 73 0 0 chrX 29390497 29390797 -133209133 - AluY SINE Alu -11 300 1 21 0 0 0 chrX 29390875 29390896 -133209034 + AT_rich Low_complexity Low_complexity 1 21 0 745 289 50 15 chrX 29391262 29391522 -133208408 + L2 LINE L2 1870 2138 -1176 945 303 150 16 chrX 29391523 29392287 -133207643 + L2 LINE L2 2421 3292 -21 223 235 0 20 chrX 29392664 29392715 -133207215 + (TA)n Simple_repeat Simple_repeat 1 50 0 202 350 0 0 chrX 29392867 29392927 -133207003 + L2 LINE L2 1842 1901 -1413 2363 77 3 7 chrX 29392929 29393239 -133206691 + AluSc SINE Alu 1 309 0 618 358 157 28 chrX 29394328 29394373 -133205557 - L2 LINE L2 -517 2797 2759 2304 242 26 8 chrX 29394373 29394976 -133204954 - MER90 LTR ERV1 0 614 1 618 358 157 28 chrX 29394976 29395690 -133204240 - L2 LINE L2 -555 2759 1940 2515 21 7 0 chrX 29396148 29396433 -133203497 + AluY SINE Alu 2 288 -23 373 266 288 14 chrX 29397398 29397537 -133202393 - MER5A DNA MER1_type -3 186 10 225 94 0 0 chrX 29399316 29399348 -133200582 + (CTATT)n Simple_repeat Simple_repeat 2 33 0 471 325 43 43 chrX 29400016 29400250 -133199680 - L3 LINE CR1 -31 1546 1313 567 275 78 32 chrX 29400298 29400655 -133199275 + MLT1H1 LTR MaLR 152 546 -9 243 0 0 0 chrX 29400685 29400712 -133199218 + (T)n Simple_repeat Simple_repeat 1 27 0 1072 152 152 62 chrX 29400775 29401065 -133198865 + L1MA8 LINE L1 5718 6033 -258 338 313 31 82 chrX 29401213 29401504 -133198426 - L3 LINE CR1 -527 1050 775 186 323 43 11 chrX 29401566 29401659 -133198271 - MIR SINE MIR -74 188 93 184 316 86 8 chrX 29401819 29401936 -133197994 - L3 LINE CR1 -820 757 632 1118 292 60 22 chrX 29402126 29402492 -133197438 + LTR16C LTR ERVL 112 491 0 180 0 0 0 chrX 29402532 29402552 -133197378 + (T)n Simple_repeat Simple_repeat 1 20 0 274 380 64 12 chrX 29402592 29402842 -133197088 + L2 LINE L2 1333 1595 -1719 991 118 0 0 chrX 29402864 29403000 -133196930 - AluSc SINE Alu -18 291 156 999 346 77 32 chrX 29403000 29403470 -133196460 + L2 LINE L2 1969 2416 -898 1733 192 40 0 chrX 29403470 29403819 -133196111 + MLT1A1 LTR MaLR 2 364 -1 999 346 77 32 chrX 29403819 29404047 -133195883 + L2 LINE L2 2416 2632 -682 732 202 40 0 chrX 29404047 29404220 -133195710 - L1MA4 LINE L1 -4 6296 6117 999 346 77 32 chrX 29404220 29404363 -133195567 + L2 LINE L2 2632 2849 -465 3746 146 58 7 chrX 29404834 29405507 -133194423 + MER39 LTR ERV1 1 707 0 2585 30 0 7 chrX 29405620 29405921 -133194009 - AluY SINE Alu -12 299 1 222 200 67 0 chrX 29406021 29406066 -133193864 - L2 LINE L2 -9 3263 3216 2235 114 0 0 chrX 29409714 29410012 -133189918 + AluSx SINE Alu 1 298 -14 2773 126 66 72 chrX 29410185 29410595 -133189335 + MER4B LTR ERV1 1 409 -201 2337 82 0 19 chrX 29410595 29410910 -133189020 - AluY SINE Alu 0 311 3 2773 126 66 72 chrX 29410910 29411072 -133188858 + MER4B LTR ERV1 409 570 -40 1024 109 34 0 chrX 29411074 29411221 -133188709 - AluSg/x SINE Alu 0 312 161 381 125 0 0 chrX 29411221 29411277 -133188653 + MER4A LTR ERV1 609 664 0 550 345 15 15 chrX 29414135 29414341 -133185589 + MIR SINE MIR 30 235 -27 981 257 0 0 chrX 29414581 29414787 -133185143 + MER58A DNA MER1_type 3 208 -16 1631 221 11 32 chrX 29415772 29415932 -133183998 - MLT1A2 LTR MaLR -2 372 210 1824 172 92 25 chrX 29415932 29416333 -133183597 + MSTA LTR MaLR 1 428 0 1631 221 11 32 chrX 29416333 29416548 -133183382 - MLT1A2 LTR MaLR -164 210 5 194 371 56 0 chrX 29416842 29416931 -133182999 - MIR SINE MIR -65 143 50 1034 268 70 68 chrX 29416945 29417456 -133182474 + LTR33A LTR ERVL 1 512 -11 221 333 90 94 chrX 29417484 29417672 -133182258 - L2 LINE L2 -7 3265 3078 2141 122 0 0 chrX 29417672 29417976 -133181954 + AluSc SINE Alu 1 304 -5 221 333 90 94 chrX 29417976 29418189 -133181741 - L2 LINE L2 -194 3078 2866 221 167 0 24 chrX 29418383 29418425 -133181505 - MER5C DNA MER1_type -248 76 36 584 346 135 24 chrX 29418534 29419320 -133180610 - L2 LINE L2 -571 2743 1871 2355 122 58 23 chrX 29419845 29420278 -133179652 + LTR7 LTR ERV1 1 448 -2 595 205 0 10 chrX 29420354 29420500 -133179430 + MER5A DNA MER1_type 4 189 0 609 237 69 0 chrX 29420518 29420691 -133179239 - MER5A DNA MER1_type -4 185 1 210 171 98 0 chrX 29421020 29421061 -133178869 + MIR SINE MIR 95 139 -123 180 268 36 18 chrX 29422294 29422350 -133177580 - L2 LINE L2 0 3272 3216 183 162 0 0 chrX 29422936 29422973 -133176957 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 343 256 178 91 chrX 29423079 29423245 -133176685 - MIR SINE MIR -6 256 63 1604 150 0 4 chrX 29423245 29423511 -133176419 + L1PA15 LINE L1 5901 6165 0 343 256 178 91 chrX 29423511 29423574 -133176356 - MIR SINE MIR -199 63 7 2169 98 0 14 chrX 29423836 29424131 -133175799 + AluSg1 SINE Alu 1 291 -18 452 261 39 8 chrX 29424516 29424646 -133175284 + MER94 DNA DNA 1 134 0 246 345 26 26 chrX 29424753 29424869 -133175061 + MIR SINE MIR 147 262 0 1657 204 24 3 chrX 29425482 29425816 -133174114 - MER58B DNA MER1_type 0 341 1 205 161 0 0 chrX 29426528 29426559 -133173371 + polypurine Low_complexity Low_complexity 2 32 0 23 54 0 0 chrX 29427472 29427509 -133172421 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chrX 29428737 29428770 -133171160 + AT_rich Low_complexity Low_complexity 1 33 0 239 373 34 52 chrX 29429439 29429707 -133170223 - L3 LINE CR1 -124 1453 1191 182 359 67 26 chrX 29430623 29430818 -133169112 - L3 LINE CR1 -1034 543 341 326 315 30 80 chrX 29430842 29431012 -133168918 + MIR SINE MIR 13 173 -89 777 221 35 0 chrX 29431012 29431184 -133168746 + MER45A DNA AcHobo 1 178 0 326 315 30 80 chrX 29431184 29431213 -133168717 + MIR SINE MIR 173 202 -60 1498 155 74 0 chrX 29431654 29431912 -133168018 - MER7A DNA MER2_type -1 335 59 8719 219 19 11 chrX 29431913 29434071 -133165859 + L1PA15 LINE L1 2730 4904 -1242 5382 127 20 6 chrX 29434072 29435263 -133164667 + L1PA15 LINE L1 4953 6157 -8 477 219 1 0 chrX 29435251 29435347 -133164583 - MER7A DNA MER2_type -251 95 1 835 133 173 6 chrX 29435415 29435588 -133164342 + MSTA LTR MaLR 1 202 -226 640 238 47 6 chrX 29435591 29435763 -133164167 + L1P4 LINE L1 753 931 -6650 * 6732 167 42 8 chrX 29435760 29436487 -133163443 + L1P4 LINE L1 4363 5063 -2521 243 0 0 0 chrX 29436487 29436514 -133163416 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 1054 109 6 11 chrX 29436520 29436694 -133163236 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 6732 167 42 8 chrX 29436694 29437252 -133162678 + L1P4 LINE L1 5067 5700 -1884 3823 117 19 1 chrX 29437254 29438308 -133161622 + L1P4 LINE L1 6167 7243 -369 462 218 0 0 chrX 29438313 29438400 -133161530 + MSTA LTR MaLR 340 426 -2 296 171 57 34 chrX 29438743 29438831 -133161099 - MIR SINE MIR -44 218 129 242 162 40 14 chrX 29439584 29439666 -133160264 + (TTAA)n Simple_repeat Simple_repeat 1 84 0 2333 109 0 6 chrX 29440626 29440938 -133158992 - AluSx SINE Alu 0 312 3 22 35 0 0 chrX 29441076 29441105 -133158825 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 29441874 29441897 -133158033 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chrX 29442086 29442119 -133157811 + AT_rich Low_complexity Low_complexity 1 33 0 4789 106 25 0 chrX 29442138 29442830 -133157100 - L1PA10 LINE L1 -16 6152 5444 2891 207 16 65 chrX 29442847 29443698 -133156232 + L1PA12 LINE L1 2585 3394 -4190 2251 111 0 10 chrX 29444746 29445052 -133154878 + AluY SINE Alu 1 303 -8 1212 148 5 0 chrX 29445545 29445748 -133154182 - L1PA14 LINE L1 0 6161 5958 411 338 15 8 chrX 29445769 29445902 -133154028 + MER5A DNA MER1_type 55 188 -1 22 0 0 0 chrX 29446767 29446789 -133153141 + AT_rich Low_complexity Low_complexity 1 22 0 323 319 188 0 chrX 29446945 29447083 -133152847 + MIR3 SINE MIR 36 199 -9 220 279 148 16 chrX 29447793 29447915 -133152015 + L3 LINE CR1 1216 1353 -224 2017 134 7 3 chrX 29449086 29449384 -133150546 - AluSx SINE Alu -13 299 1 2057 118 3 0 chrX 29449923 29450210 -133149720 + AluSg SINE Alu 9 296 -14 914 216 22 0 chrX 29451113 29451298 -133148632 - MER5A DNA MER1_type 0 189 1 541 298 37 0 chrX 29452641 29452802 -133147128 + MLT1G1 LTR MaLR 3 169 -426 207 365 143 33 chrX 29453046 29453564 -133146366 + L2 LINE L2 1955 2529 -785 21 0 0 0 chrX 29454238 29454259 -133145671 + AT_rich Low_complexity Low_complexity 1 21 0 2434 157 17 20 chrX 29454409 29454816 -133145114 + MSTB LTR MaLR 1 406 -20 2168 117 0 3 chrX 29456587 29456885 -133143045 - AluSq SINE Alu -16 297 1 528 209 0 11 chrX 29457826 29457917 -133142013 - Tigger7 DNA MER2_type -1 2486 2397 2881 173 29 4 chrX 29457919 29458411 -133141519 - Tigger7 DNA MER2_type -214 519 16 270 0 0 0 chrX 29458411 29458441 -133141489 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 1611 193 17 64 chrX 29458672 29459081 -133140849 + MLT1B LTR MaLR 1 390 0 283 370 70 33 chrX 29459268 29459538 -133140392 - L3b LINE CR1 -8 1575 1296 442 175 70 44 chrX 29461054 29461168 -133138762 - MIR SINE MIR -124 138 22 430 306 35 46 chrX 29462073 29462246 -133137684 + MIR SINE MIR 41 211 -51 2003 135 3 0 chrX 29462515 29462811 -133137119 - AluSx SINE Alu -13 299 3 400 322 75 23 chrX 29462981 29463195 -133136735 - Charlie8 DNA MER1_type -2154 263 39 26 30 0 0 chrX 29463334 29463367 -133136563 + AT_rich Low_complexity Low_complexity 1 33 0 1339 295 72 46 chrX 29463397 29464400 -133135530 + L1ME3A LINE L1 3636 4611 -1535 2252 193 64 6 chrX 29464400 29464886 -133135044 + MER67D LTR ERV1 1 514 0 1339 295 72 46 chrX 29464886 29464901 -133135029 + L1ME3A LINE L1 4611 4624 -1522 2026 126 0 10 chrX 29464901 29465194 -133134736 + AluSq SINE Alu 1 290 -23 1339 295 72 46 chrX 29465194 29465383 -133134547 + L1ME3A LINE L1 4624 4902 -1244 1786 271 66 26 chrX 29465750 29466613 -133133317 + L1ME3A LINE L1 5258 6164 -6 1986 108 59 15 chrX 29466642 29467046 -133132884 + L1MA4A LINE L1 5749 6295 -8 2520 61 3 0 chrX 29467107 29467417 -133132513 + AluY SINE Alu 1 311 0 603 257 17 0 chrX 29467662 29467837 -133132093 - MER3 DNA MER1_type 0 2411 2234 419 243 0 18 chrX 29467847 29467958 -133131972 - MER3 DNA MER1_type -61 148 40 235 263 20 10 chrX 29468126 29468225 -133131705 + (TA)n Simple_repeat Simple_repeat 2 101 0 299 341 82 2 chrX 29468407 29468531 -133131399 + MIR SINE MIR 20 153 -55 23 33 0 0 chrX 29468560 29468590 -133131340 + AT_rich Low_complexity Low_complexity 1 30 0 442 313 44 19 chrX 29469317 29469477 -133130453 - L3 LINE CR1 -23 1554 1391 624 294 77 17 chrX 29469493 29469728 -133130202 - MIR SINE MIR 0 262 14 253 347 128 30 chrX 29470266 29470736 -133129194 - L2 LINE L2 -557 2757 2242 269 321 174 11 chrX 29470889 29471073 -133128857 - L3 LINE CR1 -436 1141 928 315 246 0 0 chrX 29471116 29471242 -133128688 + (TA)n Simple_repeat Simple_repeat 1 126 0 1935 197 20 101 chrX 29472044 29472613 -133127317 + MLT2B3 LTR ERVL 1 520 -34 228 67 0 0 chrX 29472613 29472643 -133127287 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 1935 197 20 101 chrX 29472643 29472676 -133127254 + MLT2B3 LTR ERVL 520 554 0 673 174 0 9 chrX 29472737 29472846 -133127084 - FLAM_C SINE Alu -35 108 1 8418 166 103 22 chrX 29473279 29474902 -133125028 + MER52A LTR ERV1 1 1755 0 227 320 27 13 chrX 29475309 29475384 -133124546 + L2 LINE L2 3229 3304 -9 22 56 0 0 chrX 29475462 29475498 -133124432 + AT_rich Low_complexity Low_complexity 1 36 0 471 305 224 30 chrX 29477817 29478224 -133121706 + L2 LINE L2 1564 2071 -1243 2146 126 0 7 chrX 29478224 29478534 -133121396 - AluSx SINE Alu -4 308 1 471 305 224 30 chrX 29478534 29478585 -133121345 + L2 LINE L2 2071 2111 -1203 526 313 212 14 chrX 29478585 29479095 -133120835 + L2 LINE L2 2707 3310 -3 203 161 0 0 chrX 29481407 29481438 -133118492 + (CATA)n Simple_repeat Simple_repeat 3 33 0 375 60 0 0 chrX 29482262 29482312 -133117618 + (CA)n Simple_repeat Simple_repeat 1 50 0 501 370 45 0 chrX 29483324 29483567 -133116363 + MIR SINE MIR 1 254 -8 195 306 57 16 chrX 29484572 29484696 -133115234 + MIR SINE MIR 26 154 -108 9001 193 28 50 chrX 29484707 29487257 -133112673 + L1MA5A LINE L1 2642 5247 -1050 191 61 30 0 chrX 29487257 29487290 -133112640 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9001 193 28 50 chrX 29487290 29487590 -133112340 + L1MA5A LINE L1 5247 5552 -745 2815 117 36 11 chrX 29487590 29488059 -133111871 - L1MA2 LINE L1 -8 6296 5816 9001 193 28 50 chrX 29488059 29488712 -133111218 + L1MA5A LINE L1 5552 6025 -272 1994 185 3 3 chrX 29488463 29488825 -133111105 + L1PB4 LINE L1 5782 6143 -13 * 27 0 0 0 chrX 29489879 29489906 -133110024 + AT_rich Low_complexity Low_complexity 1 27 0 189 314 0 0 chrX 29490384 29490435 -133109495 - L2 LINE L2 -3 3269 3219 201 121 0 0 chrX 29491223 29491256 -133108674 + (GAATG)n Simple_repeat Simple_repeat 1 33 0 267 308 85 15 chrX 29491260 29491390 -133108540 - L3b LINE CR1 -66 1517 1379 22 0 0 0 chrX 29492881 29492903 -133107027 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 29493164 29493185 -133106745 + AT_rich Low_complexity Low_complexity 1 21 0 297 371 45 0 chrX 29493548 29493680 -133106250 - MIR3 SINE MIR -27 181 44 654 310 52 15 chrX 29493694 29494051 -133105879 - LTR16C LTR ERVL 0 491 84 1096 104 121 0 chrX 29494074 29494247 -133105683 - MER30 DNA MER1_type -36 194 1 629 167 218 6 chrX 29494791 29494947 -133104983 - MER53 DNA DNA 0 189 1 746 240 102 41 chrX 29495501 29495828 -133104102 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chrX 29495852 29495873 -133104057 + AT_rich Low_complexity Low_complexity 1 21 0 728 289 88 34 chrX 29496469 29496930 -133103000 + MLT1H LTR MaLR 1 537 -12 4125 195 83 50 chrX 29497393 29498598 -133101332 - L1MC2 LINE L1 -11 7754 6161 450 248 10 0 chrX 29498673 29498774 -133101156 + ERVL LTR ERVL 4928 5029 -735 2696 186 26 17 chrX 29499017 29499718 -133100212 + L1MA8 LINE L1 4750 5453 -743 4149 116 20 2 chrX 29499718 29500355 -133099575 + L1PA13 LINE L1 5508 6156 -7 315 188 25 25 chrX 29500397 29500477 -133099453 + L1MA8 LINE L1 5439 5518 -816 3578 169 38 20 chrX 29500520 29501278 -133098652 + L1MA8 LINE L1 5514 6285 -6 794 292 116 32 chrX 29501378 29501816 -133098114 - LTR33 LTR ERVL -18 503 29 196 344 78 47 chrX 29502616 29502744 -133097186 - L2 LINE L2 -4 3268 3137 784 154 0 22 chrX 29503176 29503312 -133096618 - FLAM_C SINE Alu 0 133 1 746 172 14 115 chrX 29503482 29503691 -133096239 + MER5A DNA MER1_type 2 189 0 231 212 0 197 chrX 29504327 29504459 -133095471 + MER102b DNA MER1_type 236 341 0 381 255 57 9 chrX 29504500 29504606 -133095324 - MER5A DNA MER1_type -69 120 10 1882 151 7 3 chrX 29505216 29505514 -133094416 - AluJo SINE Alu -13 299 1 588 238 152 0 chrX 29506221 29506385 -133093545 - MER5A DNA MER1_type 0 189 1 2159 117 3 0 chrX 29506579 29506878 -133093052 + AluSg SINE Alu 1 300 -10 655 226 38 52 chrX 29506903 29507115 -133092815 + MER3 DNA MER1_type 1 209 0 2082 121 13 7 chrX 29507876 29508181 -133091749 + AluSx SINE Alu 1 307 -5 1079 78 20 0 chrX 29508358 29508511 -133091419 + L1PA6 LINE L1 5999 6154 0 590 253 19 26 chrX 29508669 29508823 -133091107 + MER5B DNA MER1_type 26 178 0 21 0 0 0 chrX 29508831 29508852 -133091078 + GC_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chrX 29509125 29509160 -133090770 + AT_rich Low_complexity Low_complexity 1 35 0 306 293 153 7 chrX 29509193 29509343 -133090587 - MIR SINE MIR -89 173 2 21 0 0 0 chrX 29509408 29509429 -133090501 + AT_rich Low_complexity Low_complexity 1 21 0 2733 119 12 64 chrX 29509588 29510107 -133089823 - L1MA3 LINE L1 -1 6304 5813 10819 177 58 14 chrX 29510107 29513165 -133086765 - L1 LINE L1 -2899 4666 1470 2441 168 24 2 chrX 29513165 29513581 -133086349 - MSTA LTR MaLR 0 428 4 8483 174 38 24 chrX 29513590 29514751 -133085179 - MSTA-int LTR MaLR -7 1644 453 478 82 0 0 chrX 29514751 29514824 -133085106 + L1PA8 LINE L1 6096 6168 -4 8483 174 38 24 chrX 29514824 29515284 -133084646 - MSTA-int LTR MaLR -1198 453 1 2515 144 51 7 chrX 29515284 29515694 -133084236 - MSTA LTR MaLR 0 428 1 8472 177 25 3 chrX 29515696 29517122 -133082808 - L1 LINE L1 -6093 1472 16 2251 90 6 16 chrX 29518399 29518711 -133081219 + AluY SINE Alu 1 309 -2 341 206 0 0 chrX 29518952 29519015 -133080915 + L2 LINE L2 3251 3313 0 610 102 10 20 chrX 29519137 29519235 -133080695 - THE1C-int LTR MaLR -1483 97 1 2426 89 77 3 chrX 29519235 29519584 -133080346 - THE1C LTR MaLR 0 375 1 551 199 177 14 chrX 29520110 29520251 -133079679 - MER5A DNA MER1_type 0 189 26 650 198 0 24 chrX 29521605 29521731 -133078199 + FLAM_C SINE Alu 1 123 -20 52 50 0 0 chrX 29521731 29521811 -133078119 + AT_rich Low_complexity Low_complexity 1 80 0 580 324 121 41 chrX 29522379 29523065 -133076865 + L2 LINE L2 2562 3301 -12 284 102 20 0 chrX 29523076 29523125 -133076805 + (TA)n Simple_repeat Simple_repeat 2 51 0 488 138 0 0 chrX 29523165 29523245 -133076685 + MADE1 DNA Mariner 1 80 0 535 280 23 45 chrX 29526180 29526439 -133073491 - LTR16A1 LTR ERVL 0 457 232 2379 234 55 8 chrX 29528769 29529282 -133070648 + MER45B DNA AcHobo 3 539 -501 440 233 113 13 chrX 29529285 29529435 -133070495 + MIR SINE MIR 84 248 -14 331 262 134 12 chrX 29530058 29530230 -133069700 - MER112 DNA MER1_type -1 259 67 2322 64 3 22 chrX 29530960 29531271 -133068659 + AluY SINE Alu 1 305 -6 23 0 0 0 chrX 29531462 29531485 -133068445 + AT_rich Low_complexity Low_complexity 1 23 0 569 245 50 7 chrX 29531490 29531629 -133068301 + MIR SINE MIR 74 218 -44 518 309 118 5 chrX 29532534 29532754 -133067176 - MIR SINE MIR -8 254 10 21 0 0 0 chrX 29532804 29532825 -133067105 + AT_rich Low_complexity Low_complexity 1 21 0 2197 115 0 0 chrX 29532826 29533130 -133066800 - AluSq SINE Alu -9 304 1 719 116 0 0 chrX 29533367 29533479 -133066451 + L1MA1 LINE L1 6191 6302 0 18814 46 11 7 chrX 29533830 29537664 -133062266 - L1PA5 LINE L1 -7 6147 2314 565 278 121 41 chrX 29537704 29538042 -133061888 + MLT1J LTR MaLR 3 367 -144 215 242 15 15 chrX 29538624 29538690 -133061240 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 261 0 0 0 chrX 29538699 29538728 -133061202 + (TG)n Simple_repeat Simple_repeat 2 30 0 759 247 9 55 chrX 29540039 29540258 -133059672 - MER58A DNA MER1_type -15 209 1 1024 238 134 18 chrX 29542133 29542587 -133057343 - Charlie7 DNA MER1_type -622 1990 1484 374 289 56 0 chrX 29542762 29542904 -133057026 - Charlie7 DNA MER1_type -2459 153 4 577 254 94 10 chrX 29542977 29543178 -133056752 - MIR SINE MIR -17 245 28 31 26 0 0 chrX 29543249 29543287 -133056643 + AT_rich Low_complexity Low_complexity 1 38 0 24 77 0 0 chrX 29545083 29545135 -133054795 + AT_rich Low_complexity Low_complexity 1 52 0 1757 298 131 31 chrX 29545272 29545926 -133054004 - L2 LINE L2 -9 3304 2717 2581 43 0 0 chrX 29545926 29546228 -133053702 - AluY SINE Alu -9 302 1 1757 298 131 31 chrX 29546228 29546703 -133053227 - L2 LINE L2 -596 2717 2003 210 343 0 0 chrX 29546743 29546816 -133053114 + MIR SINE MIR 184 256 -6 330 294 48 27 chrX 29547008 29547154 -133052776 + MIR SINE MIR 113 261 -1 215 349 113 9 chrX 29547238 29547344 -133052586 - L2 LINE L2 -35 3237 3121 601 234 0 0 chrX 29547424 29547548 -133052382 + MER110 LTR ERV1 366 489 -2 251 282 90 0 chrX 29547568 29547646 -133052284 - L2 LINE L2 -602 2712 2628 3259 64 7 0 chrX 29547880 29548302 -133051628 - L1PA8 LINE L1 -3 6169 5745 1449 128 13 0 chrX 29548302 29548528 -133051402 + AluSq SINE Alu 69 297 -16 1243 186 22 19 chrX 29548571 29548840 -133051090 + L1MA9 LINE L1 5607 5876 -436 325 218 46 23 chrX 29548965 29549052 -133050878 - L2 LINE L2 -72 3241 3153 2058 108 3 30 chrX 29549545 29549850 -133050080 + AluSx SINE Alu 1 297 -15 228 309 0 0 chrX 29553766 29553821 -133046109 + L2 LINE L2 3210 3264 -8 258 257 22 73 chrX 29554507 29554643 -133045287 + MLT1K LTR MaLR 393 521 -67 279 133 0 0 chrX 29554715 29554760 -133045170 + (TG)n Simple_repeat Simple_repeat 2 46 0 677 336 32 8 chrX 29557329 29557579 -133042351 + MIR SINE MIR 7 262 0 2316 192 32 6 chrX 29559442 29559942 -133039988 + L1MB1 LINE L1 5645 6157 -11 258 250 53 13 chrX 29560068 29560144 -133039786 - MIR SINE MIR -127 135 57 298 121 30 0 chrX 29560172 29560238 -133039692 + (TG)n Simple_repeat Simple_repeat 1 68 0 238 188 60 68 chrX 29560933 29561050 -133038880 + L1 LINE L1 3107 3222 -2924 2392 81 3 0 chrX 29561590 29561899 -133038031 - AluSg SINE Alu 0 310 1 237 83 0 0 chrX 29562480 29562516 -133037414 + (CA)n Simple_repeat Simple_repeat 1 36 0 713 297 146 12 chrX 29563406 29563827 -133036103 - L2 LINE L2 -92 3221 2732 272 283 94 19 chrX 29564072 29564178 -133035752 - L3 LINE CR1 -72 1505 1392 660 358 41 13 chrX 29564377 29564693 -133035237 + MLT1I LTR MaLR 1 325 -84 4696 35 11 0 chrX 29564918 29565486 -133034444 + L1PA4 LINE L1 5580 6153 -2 489 34 0 0 chrX 29565684 29565743 -133034187 + (CA)n Simple_repeat Simple_repeat 2 60 0 202 274 20 0 chrX 29565910 29565961 -133033969 + (CA)n Simple_repeat Simple_repeat 2 53 0 357 312 61 46 chrX 29566207 29566630 -133033300 - L1MC/D LINE L1 -755 5391 5167 2137 112 3 6 chrX 29567963 29568275 -133031655 + AluSq SINE Alu 1 311 -2 22 0 0 0 chrX 29568405 29568427 -133031503 + AT_rich Low_complexity Low_complexity 1 22 0 295 337 79 0 chrX 29568586 29568687 -133031243 + MIR SINE MIR 40 148 -60 950 258 194 30 chrX 29569003 29569507 -133030423 + MLT1G1 LTR MaLR 1 591 -4 28 48 0 0 chrX 29569646 29569688 -133030242 + AT_rich Low_complexity Low_complexity 1 42 0 267 229 43 14 chrX 29570329 29570399 -133029531 - MIR SINE MIR -114 148 77 6683 206 75 22 chrX 29570953 29572761 -133027169 + L1MB1 LINE L1 3338 5242 -904 4583 177 29 9 chrX 29572971 29573860 -133026070 + L1MB1 LINE L1 5260 6166 -2 473 286 60 6 chrX 29574559 29574727 -133025203 - MIR SINE MIR -18 244 68 1209 222 31 6 chrX 29574755 29575056 -133024874 + MLT1D LTR MaLR 214 505 0 1798 161 3 0 chrX 29575142 29575427 -133024503 - AluSx SINE Alu -26 286 1 1412 281 145 9 chrX 29575695 29576219 -133023711 + L2 LINE L2 1912 2506 -808 2187 114 7 0 chrX 29576335 29576642 -133023288 - AluSq SINE Alu -4 309 1 209 313 0 16 chrX 29576729 29576793 -133023137 + L2 LINE L2 3227 3289 -24 203 279 49 49 chrX 29576896 29576957 -133022973 + MIR SINE MIR 22 82 -180 25 0 0 0 chrX 29577119 29577144 -133022786 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chrX 29577440 29577463 -133022467 + AT_rich Low_complexity Low_complexity 1 23 0 231 245 32 32 chrX 29580660 29580754 -133019176 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 2541 149 42 0 chrX 29581919 29582376 -133017554 + L1MA8 LINE L1 5805 6280 -11 545 250 184 0 chrX 29582733 29582885 -133017045 - MER5A DNA MER1_type 0 189 10 884 148 0 0 chrX 29587219 29587354 -133012576 + AluSx SINE Alu 1 135 -177 1343 19 0 0 chrX 29587354 29587513 -133012417 - L1P2 LINE L1 -639 5516 5358 * 4709 29 0 7 chrX 29587511 29588084 -133011846 + L1PA5 LINE L1 5590 6154 0 1072 133 0 61 chrX 29588087 29588283 -133011647 + AluSx SINE Alu 129 312 0 2176 95 0 3 chrX 29588496 29588779 -133011151 + AluSx SINE Alu 1 282 -30 258 324 86 50 chrX 29588830 29588969 -133010961 - L2 LINE L2 -8 3264 3121 343 313 60 8 chrX 29590023 29590157 -133009773 + MIR SINE MIR 20 160 -102 238 245 0 0 chrX 29590284 29590333 -133009597 - L2 LINE L2 0 3313 3265 438 348 191 20 chrX 29591221 29591618 -133008312 + L2 LINE L2 2849 3313 0 189 167 0 0 chrX 29591898 29591928 -133008002 - MIR SINE MIR -166 96 67 203 278 153 0 chrX 29591959 29592031 -133007899 + MIR SINE MIR 47 129 -133 267 232 0 0 chrX 29593434 29593509 -133006421 + (TCCA)n Simple_repeat Simple_repeat 1 75 0 386 355 157 0 chrX 29593571 29593743 -133006187 + MIR SINE MIR 51 249 -13 385 327 0 109 chrX 29593827 29593992 -133005938 - L2 LINE L2 0 3272 3126 324 375 55 10 chrX 29594015 29594215 -133005715 - L1MC/D LINE L1 -2087 5721 5513 381 340 46 34 chrX 29594959 29595197 -133004733 + LTR33 LTR ERVL 42 282 -239 2061 171 3 11 chrX 29595475 29595843 -133004087 - MER47A DNA MER2_type 0 366 2 2545 157 36 0 chrX 29595873 29596312 -133003618 - L1PB4 LINE L1 -14 6142 5688 785 222 54 51 chrX 29596516 29596831 -133003099 - L1MA9 LINE L1 -38 6274 5959 682 165 0 114 chrX 29596840 29596884 -133003046 + L1MA9 LINE L1 5786 5833 -479 2094 120 20 0 chrX 29596884 29597183 -133002747 + AluSc SINE Alu 1 305 -4 682 165 0 114 chrX 29597183 29597194 -133002736 + L1MA9 LINE L1 5833 5844 -468 1768 119 46 56 chrX 29597194 29597497 -133002433 + AluSx SINE Alu 3 302 -10 682 165 0 114 chrX 29597497 29597616 -133002314 + L1MA9 LINE L1 5844 5941 -371 275 301 75 34 chrX 29597690 29597836 -133002094 - L1M4 LINE L1 -1918 4228 4077 1971 128 147 26 chrX 29597861 29598243 -133001687 + MSTA LTR MaLR 1 428 0 8620 183 31 9 chrX 29598243 29599858 -133000072 + MSTA-int LTR MaLR 1 1651 0 1914 153 153 5 chrX 29599859 29600231 -132999699 + MSTA LTR MaLR 2 428 0 22 0 0 0 chrX 29600416 29600438 -132999492 + AT_rich Low_complexity Low_complexity 1 22 0 206 219 0 0 chrX 29601645 29601686 -132998244 + (CATA)n Simple_repeat Simple_repeat 2 42 0 29 47 0 0 chrX 29601688 29601731 -132998199 + AT_rich Low_complexity Low_complexity 1 43 0 403 210 34 8 chrX 29602365 29602484 -132997446 + L1MA7 LINE L1 6165 6286 -5 3158 226 76 9 chrX 29602491 29602754 -132997176 - L1MA9 LINE L1 -235 6077 5833 189 0 0 0 chrX 29602754 29602775 -132997155 + (TG)n Simple_repeat Simple_repeat 2 22 0 3158 226 76 9 chrX 29602775 29603908 -132996022 - L1MA9 LINE L1 -479 5833 4576 1128 176 9 14 chrX 29604008 29604218 -132995712 - MER2 DNA MER2_type -135 210 2 3641 218 57 16 chrX 29604227 29605218 -132994712 - L1MA9 LINE L1 -1577 4569 3539 933 238 46 4 chrX 29605202 29605463 -132994467 + L1MA9 LINE L1 5994 6265 -47 * 1278 170 31 0 chrX 29605463 29605686 -132994244 + MER30 DNA MER1_type 1 230 0 1262 192 33 0 chrX 29607098 29607369 -132992561 + L1 LINE L1 2251 2530 -3616 * 1558 136 50 50 chrX 29607345 29607684 -132992246 + L1MA2 LINE L1 5966 6304 0 360 384 94 14 chrX 29607872 29608359 -132991571 + L3 LINE CR1 345 870 -707 294 197 47 39 chrX 29608386 29608500 -132991430 - L1MA6 LINE L1 0 6300 6181 231 232 0 0 chrX 29609408 29609464 -132990466 + (TA)n Simple_repeat Simple_repeat 2 57 0 368 404 7 7 chrX 29610610 29610761 -132989169 - L2 LINE L2 0 3272 3122 1314 158 8 13 chrX 29610769 29611003 -132988927 + MER46A DNA MER2_type 1 233 -3 1308 210 7 55 chrX 29611738 29612048 -132987882 + AluJo SINE Alu 1 295 -17 42214 41 21 1 chrX 29612586 29618617 -132981313 + L1PA3 LINE L1 2 6155 0 23 54 0 0 chrX 29618681 29618718 -132981212 + AT_rich Low_complexity Low_complexity 1 37 0 355 267 108 65 chrX 29620016 29620248 -132979682 + MIR SINE MIR 18 259 -3 804 299 25 0 chrX 29620737 29620938 -132978992 - MIR SINE MIR -34 228 23 879 219 11 0 chrX 29621441 29621624 -132978306 + MER5A DNA MER1_type 1 185 -4 734 301 68 10 chrX 29621638 29622023 -132977907 + MLT1I LTR MaLR 1 407 -2 21 95 0 0 chrX 29622251 29622314 -132977616 + AT_rich Low_complexity Low_complexity 1 63 0 294 395 68 9 chrX 29622433 29622653 -132977277 - MIR SINE MIR -29 233 1 568 135 21 0 chrX 29623427 29623523 -132976407 + L1MB8 LINE L1 6075 6172 -6 559 86 0 12 chrX 29623605 29623686 -132976244 - MADE1 DNA Mariner 0 80 1 194 337 0 41 chrX 29624417 29624515 -132975415 + MIR SINE MIR 48 141 -121 871 181 7 0 chrX 29624517 29624672 -132975258 - MIR SINE MIR -57 205 50 1234 293 65 29 chrX 29624678 29625094 -132974836 + LTR16C LTR ERVL 5 435 -56 186 333 61 30 chrX 29625634 29625733 -132974197 - L2 LINE L2 -15 3257 3156 257 326 70 41 chrX 29625825 29626067 -132973863 + L2 LINE L2 1801 2049 -1265 258 404 112 5 chrX 29626110 29626504 -132973426 + L2 LINE L2 2196 2631 -683 821 177 25 91 chrX 29628117 29628251 -132971679 + MER5A DNA MER1_type 4 122 -67 2931 155 26 12 chrX 29628251 29628818 -132971112 - L1MA5 LINE L1 0 6300 5726 821 177 25 91 chrX 29628818 29628881 -132971049 + MER5A DNA MER1_type 122 188 -1 359 289 47 23 chrX 29629024 29629152 -132970778 + MER5A DNA MER1_type 9 139 -50 1374 171 57 50 chrX 29629183 29629464 -132970466 - AluJo SINE Alu -27 285 3 2170 118 0 10 chrX 29629748 29630062 -132969868 + AluSx SINE Alu 1 311 -1 209 327 221 0 chrX 29630098 29630211 -132969719 - MIR SINE MIR -113 149 12 206 351 13 13 chrX 29631720 29631797 -132968133 + L2 LINE L2 3186 3262 -10 1282 152 29 10 chrX 29632246 29632450 -132967480 + LTR28 LTR ERV1 1 208 -812 2070 148 51 14 chrX 29632450 29632801 -132967129 + THE1B LTR MaLR 1 364 0 10747 119 10 1 chrX 29632801 29634366 -132965564 + THE1B-int LTR MaLR 1 1580 0 2054 134 57 17 chrX 29634366 29634716 -132965214 + THE1B LTR MaLR 1 364 0 215 291 18 0 chrX 29635037 29635092 -132964838 + L2 LINE L2 3250 3305 -8 206 364 101 0 chrX 29635257 29635386 -132964544 - L3 LINE CR1 -434 1143 1002 412 312 100 0 chrX 29635611 29635781 -132964149 - L3 LINE CR1 -764 813 627 761 225 29 100 chrX 29635799 29636079 -132963851 - MIR SINE MIR -1 261 2 949 194 84 28 chrX 29638735 29638998 -132960932 - L1MA8 LINE L1 -4 6296 6024 2372 118 19 16 chrX 29639129 29639492 -132960438 + THE1B LTR MaLR 1 364 0 195 42 0 0 chrX 29639635 29639659 -132960271 + (GGA)n Simple_repeat Simple_repeat 3 26 0 361 320 57 49 chrX 29639671 29639918 -132960012 + LTR16C LTR ERVL 242 490 -1 199 219 97 79 chrX 29639991 29640105 -132959825 - MIR3 SINE MIR -88 120 5 342 242 30 10 chrX 29640369 29640468 -132959462 + MIR SINE MIR 162 262 0 22 0 0 0 chrX 29641531 29641553 -132958377 + GC_rich Low_complexity Low_complexity 1 22 0 292 291 209 0 chrX 29642189 29642299 -132957631 + L2 LINE L2 3136 3268 -4 2128 136 0 3 chrX 29643556 29643866 -132956064 + AluY SINE Alu 1 309 -2 585 321 55 37 chrX 29644017 29644557 -132955373 - L2 LINE L2 0 3313 2687 3818 219 52 33 chrX 29645973 29646853 -132953077 - L1MB3 LINE L1 -3 6180 5318 2636 136 36 0 chrX 29646853 29647266 -132952664 + MSTA LTR MaLR 1 428 0 3818 219 52 33 chrX 29647266 29648325 -132951605 - L1MB3 LINE L1 -865 5318 4211 898 153 77 5 chrX 29648391 29648600 -132951330 + L1MA7 LINE L1 6068 6291 0 206 305 69 30 chrX 29649292 29649423 -132950507 + MIR SINE MIR 66 201 -61 1869 154 80 9 chrX 29650826 29651163 -132948767 - THE1B LTR MaLR -3 361 1 277 224 51 10 chrX 29651185 29651283 -132948647 + MLT1J1 LTR MaLR 345 446 0 916 306 45 38 chrX 29652353 29652752 -132947178 - L2 LINE L2 -2 3311 2910 198 0 0 0 chrX 29653191 29653213 -132946717 + (CA)n Simple_repeat Simple_repeat 2 23 0 539 269 30 0 chrX 29654169 29654303 -132945627 - MIR SINE MIR -108 154 17 430 289 19 0 chrX 29654679 29654835 -132945095 + MER110 LTR ERV1 307 465 -26 2001 139 60 58 chrX 29654973 29655406 -132944524 - L1MA4 LINE L1 -16 6284 5851 22 56 0 0 chrX 29655872 29655908 -132944022 + AT_rich Low_complexity Low_complexity 1 36 0 1463 112 123 73 chrX 29656108 29656465 -132943465 - THE1C LTR MaLR 0 375 1 9362 130 20 39 chrX 29656465 29658073 -132941857 - THE1C-int LTR MaLR 0 1580 3 1622 161 75 33 chrX 29658075 29658435 -132941495 - THE1C LTR MaLR 0 375 1 21 0 0 0 chrX 29659931 29659952 -132939978 + AT_rich Low_complexity Low_complexity 1 21 0 1335 256 49 28 chrX 29660140 29660633 -132939297 - MLT1D LTR MaLR 0 505 3 1472 12 0 6 chrX 29661208 29661380 -132938550 - L1PA5 LINE L1 -181 5973 5803 243 0 0 0 chrX 29661388 29661415 -132938515 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 1123 20 41 14 chrX 29661419 29661565 -132938365 + L1PA4 LINE L1 6006 6155 0 22 0 0 0 chrX 29661604 29661626 -132938304 + AT_rich Low_complexity Low_complexity 1 22 0 186 289 87 58 chrX 29662491 29662530 -132937400 - L2 LINE L2 -9 3263 3227 2152 40 0 90 chrX 29662530 29662831 -132937099 + AluY SINE Alu 34 307 -4 186 289 87 58 chrX 29662831 29662895 -132937035 - L2 LINE L2 -45 3227 3157 233 240 0 0 chrX 29664104 29664154 -132935776 - L2 LINE L2 -336 2977 2928 201 349 27 41 chrX 29664161 29664307 -132935623 - L2 LINE L2 -615 2699 2556 300 232 0 0 chrX 29664329 29664385 -132935545 - MER2 DNA MER2_type 0 345 290 954 144 103 5 chrX 29664385 29664579 -132935351 + L1MA1 LINE L1 6080 6292 -10 245 256 12 0 chrX 29664631 29664713 -132935217 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 * 662 199 0 30 chrX 29664699 29665072 -132934858 + (TA)n Simple_repeat Simple_repeat 1 361 0 707 184 7 7 chrX 29665178 29665325 -132934605 + L1PA15 LINE L1 6017 6163 -2 1045 171 37 0 chrX 29665325 29665512 -132934418 - MER2 DNA MER2_type -146 199 6 324 0 0 0 chrX 29667774 29667810 -132932120 + (TG)n Simple_repeat Simple_repeat 2 37 0 412 259 187 6 chrX 29668461 29668627 -132931303 + MIR SINE MIR 56 251 -11 315 0 0 0 chrX 29668901 29668936 -132930994 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 321 26 0 0 chrX 29668935 29668973 -132930957 + (GA)n Simple_repeat Simple_repeat 1 38 0 1426 133 105 59 chrX 29669160 29669484 -132930446 - MER44D DNA MER2_type 0 609 1 180 336 161 22 chrX 29669659 29669796 -132930134 - MIR SINE MIR -71 191 36 207 313 116 27 chrX 29671110 29671257 -132928673 + MER5B DNA MER1_type 2 161 -17 498 306 88 21 chrX 29671265 29671458 -132928472 + MIR SINE MIR 20 225 -37 22 70 0 0 chrX 29671658 29671701 -132928229 + AT_rich Low_complexity Low_complexity 1 43 0 7352 241 20 5 chrX 29671781 29673297 -132926633 + L1MA4A LINE L1 5 1543 -5306 * 11779 208 64 20 chrX 29673293 29675995 -132923935 + L1MA4A LINE L1 1960 4967 -2038 2284 106 0 6 chrX 29675995 29676307 -132923623 + AluY SINE Alu 1 310 -1 11779 208 64 20 chrX 29676307 29678439 -132921491 + L1MA4A LINE L1 4967 7004 -1 782 178 6 58 chrX 29678800 29678974 -132920956 - FRAM SINE Alu -11 165 1 21 57 0 0 chrX 29680299 29680334 -132919596 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chrX 29680522 29680547 -132919383 + AT_rich Low_complexity Low_complexity 1 25 0 18478 100 30 4 chrX 29682250 29685780 -132914150 - L1PA7 LINE L1 -5 6149 2515 15825 114 21 36 chrX 29685782 29689036 -132910894 + L1P3 LINE L1 424 3701 -2760 1446 165 0 125 chrX 29691491 29691819 -132908111 + AluJb SINE Alu 5 291 -11 312 108 0 62 chrX 29691828 29691893 -132908037 + L1MA9 LINE L1 6252 6312 0 1497 281 121 35 chrX 29691954 29692576 -132907354 + L2 LINE L2 2185 2859 -455 573 212 85 146 chrX 29692617 29692738 -132907192 + L2 LINE L2 2960 3087 -226 1429 177 21 42 chrX 29692738 29693026 -132906904 + AluJo SINE Alu 1 282 -30 573 212 85 146 chrX 29693026 29693267 -132906663 + L2 LINE L2 3087 3300 -13 219 150 0 0 chrX 29693948 29693988 -132905942 + (A)n Simple_repeat Simple_repeat 1 40 0 2055 121 0 0 chrX 29694038 29694327 -132905603 + AluSx SINE Alu 1 289 -23 27 0 0 0 chrX 29694505 29694532 -132905398 + AT_rich Low_complexity Low_complexity 1 27 0 226 320 49 90 chrX 29694754 29694876 -132905054 + MIR3 SINE MIR 66 182 -26 22 56 0 0 chrX 29694896 29694932 -132904998 + AT_rich Low_complexity Low_complexity 1 36 0 497 349 115 0 chrX 29695083 29695275 -132904655 + MIR SINE MIR 49 262 0 329 257 109 22 chrX 29695357 29695540 -132904390 + HAL1b LINE L1 754 952 -396 305 231 0 66 chrX 29697149 29697240 -132902690 - L1MC4 LINE L1 -1310 6732 6648 256 197 99 28 chrX 29698744 29698815 -132901115 + MIR SINE MIR 52 127 -135 21 36 0 0 chrX 29699207 29699235 -132900695 + AT_rich Low_complexity Low_complexity 1 28 0 978 302 58 37 chrX 29700352 29700786 -132899144 + LTR16A LTR ERVL 3 445 -5 195 42 0 0 chrX 29701536 29701560 -132898370 + (A)n Simple_repeat Simple_repeat 1 24 0 2499 56 0 10 chrX 29701845 29702149 -132897781 + AluY SINE Alu 1 301 -10 525 287 205 4 chrX 29702376 29702644 -132897286 + MER5C DNA MER1_type 3 324 0 2580 41 0 13 chrX 29702990 29703305 -132896625 + AluY SINE Alu 1 311 0 927 266 63 0 chrX 29703328 29703599 -132896331 + L1MB7 LINE L1 5820 6107 -77 201 175 0 0 chrX 29704056 29704096 -132895834 + (TA)n Simple_repeat Simple_repeat 1 40 0 302 254 28 0 chrX 29704248 29704390 -132895540 + (TA)n Simple_repeat Simple_repeat 1 146 0 4143 208 20 21 chrX 29705671 29706571 -132893359 + L1MD2 LINE L1 5369 6267 -92 259 278 183 0 chrX 29706694 29706809 -132893121 - L2 LINE L2 0 3313 3178 2582 171 33 6 chrX 29707179 29707698 -132892232 + L1MB4 LINE L1 5612 6144 -36 4664 165 36 21 chrX 29707703 29708668 -132891262 + L1MA8 LINE L1 5308 6291 0 258 130 19 0 chrX 29708666 29708720 -132891210 + L1MB4 LINE L1 6126 6180 0 * 282 229 14 0 chrX 29708773 29708843 -132891087 - MER58A DNA MER1_type 0 116 46 3784 126 28 16 chrX 29709117 29709348 -132890582 - L1PA15 LINE L1 -7 6158 5931 2404 63 7 7 chrX 29709348 29709648 -132890282 - AluSp SINE Alu -13 300 1 3784 126 28 16 chrX 29709648 29710034 -132889896 - L1PA15 LINE L1 -234 5931 5534 198 0 0 0 chrX 29710139 29710161 -132889769 + (CA)n Simple_repeat Simple_repeat 2 23 0 612 224 0 0 chrX 29710214 29710379 -132889551 + (TA)n Simple_repeat Simple_repeat 1 165 0 290 167 31 52 chrX 29710606 29710702 -132889228 - L1M LINE L1 -2457 5351 5258 644 322 108 21 chrX 29710762 29711324 -132888606 - L1 LINE L1 -2414 3732 3122 460 30 15 15 chrX 29713337 29713404 -132886526 + (TG)n Simple_repeat Simple_repeat 1 67 0 189 74 0 0 chrX 29714111 29714138 -132885792 + (CATTT)n Simple_repeat Simple_repeat 3 29 0 186 326 77 0 chrX 29715772 29715880 -132884050 - MIR SINE MIR -65 143 41 2027 123 3 0 chrX 29717726 29718019 -132881911 - AluSx SINE Alu -18 294 1 619 340 90 38 chrX 29718957 29719357 -132880573 + LTR33 LTR ERVL 88 508 -13 2934 70 30 2 chrX 29719950 29720349 -132879581 - L1PA7 LINE L1 -4 6150 5741 2672 86 19 0 chrX 29720349 29720709 -132879221 + L1PA7 LINE L1 5372 5738 -416 1992 108 43 0 chrX 29721418 29721696 -132878234 - AluSc SINE Alu -19 290 1 1656 273 106 22 chrX 29722129 29722894 -132877036 - L1ME3A LINE L1 -7 6163 5335 611 319 93 19 chrX 29722952 29723654 -132876276 + L1M4 LINE L1 4527 5280 -866 301 250 30 23 chrX 29723654 29723786 -132876144 - L1ME3A LINE L1 -989 5157 5025 311 147 29 29 chrX 29723789 29723857 -132876073 + LTR60 LTR ERV1 3 70 -516 735 246 78 30 chrX 29724007 29724085 -132875845 + LTR43 LTR ERV1 132 205 -397 183 42 0 0 chrX 29724085 29724109 -132875821 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 735 246 78 30 chrX 29724109 29724298 -132875632 + LTR43 LTR ERV1 205 412 -190 1105 138 36 25 chrX 29724299 29724495 -132875435 - L1PA15 LINE L1 -193 5972 5775 2137 96 7 3 chrX 29724502 29724794 -132875136 - AluSx SINE Alu -19 293 1 2358 96 0 6 chrX 29725812 29726165 -132873765 + AluSx SINE Alu 3 353 0 477 316 20 13 chrX 29727381 29727533 -132872397 + MIR SINE MIR 5 157 -105 251 341 0 0 chrX 29727725 29727813 -132872117 + MIR SINE MIR 165 252 -10 * 277 281 185 45 chrX 29727799 29727977 -132871953 - MIR SINE MIR -8 254 52 216 0 0 0 chrX 29728411 29728435 -132871495 + (A)n Simple_repeat Simple_repeat 1 24 0 1690 144 15 4 chrX 29728442 29728706 -132871224 + AluSx SINE Alu 31 297 -15 201 133 0 0 chrX 29730669 29730699 -132869231 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chrX 29731668 29731690 -132868240 + AT_rich Low_complexity Low_complexity 1 22 0 188 353 134 8 chrX 29732504 29732623 -132867307 - L2 LINE L2 0 3272 3139 8452 181 20 9 chrX 29733152 29734623 -132865307 + L1MA3 LINE L1 13 1498 -6067 3929 178 99 16 chrX 29734628 29735476 -132864454 + L1MA3 LINE L1 2701 3477 -4088 180 0 0 0 chrX 29735476 29735496 -132864434 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3929 178 99 16 chrX 29735496 29736327 -132863603 + L1MA3 LINE L1 3477 4532 -3033 3575 187 56 1 chrX 29736325 29737072 -132862858 + L1MA3 LINE L1 4846 5633 -1932 * 5598 162 34 10 chrX 29737067 29738481 -132861449 + L1MA3 LINE L1 6122 7580 -144 2388 74 0 0 chrX 29738481 29738777 -132861153 + AluY SINE Alu 1 296 -15 5598 162 34 10 chrX 29738777 29738917 -132861013 + L1MA3 LINE L1 7580 7715 -9 2178 115 0 0 chrX 29740026 29740313 -132859617 - AluSc SINE Alu -20 289 3 457 292 60 19 chrX 29740578 29740794 -132859136 + MIR SINE MIR 32 256 -6 1966 132 0 0 chrX 29740873 29741146 -132858784 + AluSx SINE Alu 1 273 -39 450 0 0 0 chrX 29741149 29741199 -132858731 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chrX 29741215 29741237 -132858693 + AT_rich Low_complexity Low_complexity 1 22 0 680 259 38 9 chrX 29742324 29742536 -132857394 - L1ME3A LINE L1 -9 6161 5944 512 276 100 18 chrX 29742696 29742866 -132857064 + MIR SINE MIR 15 198 -64 274 268 28 0 chrX 29743004 29743075 -132856855 + MIR SINE MIR 176 248 -14 610 280 125 21 chrX 29743174 29743542 -132856388 - LTR33 LTR ERVL -48 473 2 1992 101 35 10 chrX 29744437 29744725 -132855205 - AluSg SINE Alu -15 295 1 2070 131 24 0 chrX 29744922 29745213 -132854717 + AluSx SINE Alu 1 298 -14 372 77 0 0 chrX 29745225 29745277 -132854653 + (CA)n Simple_repeat Simple_repeat 2 53 0 425 216 72 9 chrX 29745924 29746035 -132853895 - MIR SINE MIR -113 149 32 180 324 134 22 chrX 29747099 29747278 -132852652 - L2 LINE L2 -264 3008 2810 1258 286 56 54 chrX 29747529 29748067 -132851863 + MLT1H LTR MaLR 3 541 -8 25 31 0 0 chrX 29748128 29748160 -132851770 + AT_rich Low_complexity Low_complexity 1 32 0 1989 124 0 7 chrX 29748439 29748721 -132851209 - AluSg SINE Alu -30 280 1 3675 248 42 46 chrX 29749627 29751410 -132848520 + L1P3 LINE L1 10 1764 -4687 * 6255 135 56 49 chrX 29751406 29752745 -132847185 + L1P LINE L1 3903 5250 -896 185 314 0 0 chrX 29753926 29753977 -132845953 + L2 LINE L2 712 762 -2552 304 277 160 29 chrX 29754368 29754606 -132845324 - L2 LINE L2 -415 2899 2631 269 274 0 16 chrX 29755074 29755136 -132844794 - MER5A DNA MER1_type -3 186 126 367 322 48 14 chrX 29755186 29755332 -132844598 + MIR3 SINE MIR 54 204 -4 325 288 75 0 chrX 29755686 29755766 -132844164 - MER5A DNA MER1_type -95 94 9 1959 281 18 14 chrX 29756259 29756810 -132843120 + MLT1H1 LTR MaLR 1 553 -2 188 200 18 0 chrX 29757235 29757290 -132842640 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 354 304 103 79 chrX 29757306 29757977 -132841953 + L2 LINE L2 1850 2536 -778 517 330 56 28 chrX 29759336 29759719 -132840211 + LTR16A1 LTR ERVL 86 457 0 2345 57 3 13 chrX 29759781 29760079 -132839851 + AluY SINE Alu 1 295 -16 2131 133 0 0 chrX 29760415 29760723 -132839207 + AluSg SINE Alu 1 308 -2 182 418 25 0 chrX 29761944 29762066 -132837864 + L2 LINE L2 3147 3271 -1 2323 99 3 0 chrX 29762350 29762654 -132837276 + AluSp SINE Alu 1 305 -8 1273 264 193 15 chrX 29763448 29764121 -132835809 + LTR50 LTR ERVL 3 795 0 21 0 0 0 chrX 29764987 29765008 -132834922 + AT_rich Low_complexity Low_complexity 1 21 0 2601 58 0 0 chrX 29765230 29765539 -132834391 + AluY SINE Alu 1 309 -2 363 258 107 103 chrX 29766086 29766338 -132833592 - MIR SINE MIR -7 255 3 198 0 0 0 chrX 29767515 29767537 -132832393 + (A)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chrX 29768010 29768036 -132831894 + AT_rich Low_complexity Low_complexity 1 26 0 2440 55 0 0 chrX 29768089 29768379 -132831551 + AluY SINE Alu 1 290 -21 2483 78 0 0 chrX 29768753 29769061 -132830869 + AluY SINE Alu 1 308 -3 1153 158 85 88 chrX 29769061 29769165 -132830765 + L1MA8 LINE L1 4954 5057 -1089 2263 101 7 0 chrX 29769165 29769463 -132830467 + AluSg SINE Alu 11 310 0 1153 158 85 88 chrX 29769463 29769756 -132830174 + L1MA8 LINE L1 5057 5350 -796 1587 57 13 35 chrX 29769826 29770054 -132829876 - L1PA8 LINE L1 -1 6171 5949 2464 156 46 4 chrX 29770063 29770563 -132829367 + L1MA8 LINE L1 5344 5864 -427 21 0 0 0 chrX 29770598 29770619 -132829311 + AT_rich Low_complexity Low_complexity 1 21 0 1171 181 127 70 chrX 29771152 29771578 -132828352 + LTR7 LTR ERV1 1 450 0 642 211 21 31 chrX 29772407 29772601 -132827329 + Charlie5 DNA MER1_type 5 196 -2416 * 684 166 183 33 chrX 29772599 29772840 -132827090 + Charlie5 DNA MER1_type 2348 2624 0 217 250 138 12 chrX 29773283 29773363 -132826567 + MIR SINE MIR 65 154 -108 321 146 0 0 chrX 29773972 29774020 -132825910 + MER5B DNA MER1_type 5 52 -126 2076 104 23 16 chrX 29774071 29774379 -132825551 - AluSq SINE Alu -3 310 1 234 350 60 8 chrX 29775002 29775119 -132824811 + MIR SINE MIR 46 168 -94 797 199 0 6 chrX 29775911 29776067 -132823863 - LTR32 LTR ERVL 0 471 317 1551 206 21 12 chrX 29776136 29776471 -132823459 - LTR32 LTR ERVL -127 344 7 1602 210 33 11 chrX 29776566 29776932 -132822998 - MLT1A2 LTR MaLR 0 374 1 288 0 0 0 chrX 29777532 29777564 -132822366 + (TG)n Simple_repeat Simple_repeat 2 33 0 297 253 21 21 chrX 29778977 29779072 -132820858 + GA-rich Low_complexity Low_complexity 4 98 0 1057 171 55 107 chrX 29780035 29780449 -132819481 - MER66A LTR ERV1 0 478 97 311 303 11 0 chrX 29780588 29780677 -132819253 - L2 LINE L2 -1 3312 3223 392 294 13 13 chrX 29780722 29780875 -132819055 + MER102b DNA MER1_type 113 265 -76 2510 71 0 3 chrX 29781081 29781391 -132818539 + AluSc SINE Alu 1 309 0 1445 223 0 17 chrX 29782036 29782332 -132817598 - AluJo SINE Alu -21 291 1 30 45 0 0 chrX 29782791 29782835 -132817095 + AT_rich Low_complexity Low_complexity 1 44 0 432 37 0 0 chrX 29783833 29783887 -132816043 + (CA)n Simple_repeat Simple_repeat 1 54 0 2216 86 40 7 chrX 29784562 29784864 -132815066 + AluSx SINE Alu 1 312 0 459 288 0 23 chrX 29785169 29785329 -132814601 - MER5B DNA MER1_type 0 178 36 501 275 116 0 chrX 29785554 29785692 -132814238 + MIR SINE MIR 2 155 -107 407 240 65 1 chrX 29785874 29786018 -132813912 - L1ME3A LINE L1 -1 6162 6000 2333 99 3 6 chrX 29786251 29786563 -132813367 - AluSx SINE Alu -1 311 1 295 327 138 44 chrX 29787144 29787409 -132812521 + L2 LINE L2 2989 3286 -27 920 258 5 14 chrX 29787409 29787630 -132812300 - MER20 DNA MER1_type 0 219 1 295 327 138 44 chrX 29787630 29787661 -132812269 + L2 LINE L2 3286 3313 0 201 152 0 0 chrX 29787661 29787694 -132812236 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 537 318 101 22 chrX 29787726 29787752 -132812178 - L2 LINE L2 -337 2977 2954 2444 136 44 7 chrX 29787752 29788165 -132811765 + MSTA LTR MaLR 1 428 0 537 318 101 22 chrX 29788165 29788496 -132811434 - L2 LINE L2 -360 2954 2592 207 0 0 0 chrX 29790838 29790861 -132809069 + (A)n Simple_repeat Simple_repeat 1 23 0 2038 101 0 44 chrX 29792112 29792428 -132807502 - AluSg SINE Alu -8 302 1 548 303 52 9 chrX 29793275 29793506 -132806424 + L1ME3A LINE L1 5371 5611 -551 327 316 74 16 chrX 29793507 29793697 -132806233 - LTR33A LTR ERVL -2 521 321 291 140 0 0 chrX 29793701 29793751 -132806179 + (GA)n Simple_repeat Simple_repeat 2 51 0 278 130 0 19 chrX 29793742 29793796 -132806134 + (GGA)n Simple_repeat Simple_repeat 2 54 0 * 314 273 111 81 chrX 29793849 29794120 -132805810 - LTR33A LTR ERVL -240 283 5 779 230 92 29 chrX 29794163 29794402 -132805528 + L1ME3A LINE L1 5703 5956 -214 222 37 0 0 chrX 29794688 29794715 -132805215 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 792 329 55 7 chrX 29795461 29795771 -132804159 + LTR16C LTR ERVL 167 491 0 304 268 6 116 chrX 29796268 29796432 -132803498 + L1ME LINE L1 5677 5822 -348 695 289 0 21 chrX 29796556 29796743 -132803187 - MIR SINE MIR -78 184 2 541 160 47 47 chrX 29796946 29797096 -132802834 + MER96B DNA MER1_type? 224 373 -44 23 33 0 0 chrX 29798058 29798088 -132801842 + AT_rich Low_complexity Low_complexity 1 30 0 948 122 20 36 chrX 29798515 29798671 -132801259 + L1MA4 LINE L1 6096 6250 -50 1598 162 54 40 chrX 29798671 29799041 -132800889 + THE1C LTR MaLR 1 375 0 948 122 20 36 chrX 29799041 29799080 -132800850 + L1MA4 LINE L1 6250 6288 -12 21 0 0 0 chrX 29799922 29799943 -132799987 + AT_rich Low_complexity Low_complexity 1 21 0 1636 153 14 4 chrX 29800061 29800336 -132799594 - AluJb SINE Alu -32 280 3 270 363 0 34 chrX 29800580 29800726 -132799204 - L2 LINE L2 -188 3084 2944 262 288 0 14 chrX 29802160 29802233 -132797697 + CT-rich Low_complexity Low_complexity 3 74 0 585 331 35 51 chrX 29802333 29802647 -132797283 - L2 LINE L2 0 3313 3005 580 287 35 17 chrX 29802993 29803223 -132796707 + L1MC/D LINE L1 5325 5558 -2250 318 215 0 0 chrX 29803496 29803575 -132796355 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 1795 137 62 16 chrX 29804129 29804450 -132795480 - MER1B DNA MER1_type -1 336 1 2047 122 16 3 chrX 29804970 29805273 -132794657 + AluSx SINE Alu 5 311 -1 1679 166 20 17 chrX 29805935 29806236 -132793694 + AluJo SINE Alu 3 304 -8 261 0 0 0 chrX 29806833 29806862 -132793068 + (T)n Simple_repeat Simple_repeat 1 29 0 3482 129 24 44 chrX 29807611 29808155 -132791775 + L1MA8 LINE L1 5620 6149 -142 2023 119 0 7 chrX 29808155 29808457 -132791473 + AluSx SINE Alu 1 300 -12 3482 129 24 44 chrX 29808457 29808592 -132791338 + L1MA8 LINE L1 6149 6285 -6 196 377 26 26 chrX 29808615 29808729 -132791201 + MIR SINE MIR 136 249 -13 220 189 0 0 chrX 29808937 29808974 -132790956 + L2 LINE L2 3265 3301 -12 619 136 0 0 chrX 29809043 29809146 -132790784 - AluSp SINE Alu 0 313 211 507 121 12 0 chrX 29809145 29809228 -132790702 - AluSp SINE Alu -189 124 41 * 33 43 0 0 chrX 29809760 29809807 -132790123 + AT_rich Low_complexity Low_complexity 1 47 0 328 282 61 49 chrX 29810659 29810904 -132789026 - L2 LINE L2 -773 2541 2294 186 43 0 0 chrX 29811109 29811132 -132788798 + (TC)n Simple_repeat Simple_repeat 1 23 0 3200 58 0 7 chrX 29811247 29811662 -132788268 - L1PA7 LINE L1 0 6154 5743 2167 151 0 8 chrX 29811662 29812019 -132787911 - MER47A DNA MER2_type -11 355 2 180 0 0 0 chrX 29812073 29812093 -132787837 + (TTA)n Simple_repeat Simple_repeat 1 20 0 183 261 23 154 chrX 29812341 29812471 -132787459 + L2 LINE L2 2925 3037 -235 181 95 24 24 chrX 29812662 29812704 -132787226 + (TTATA)n Simple_repeat Simple_repeat 3 44 0 207 179 36 36 chrX 29812721 29812805 -132787125 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 277 370 15 7 chrX 29813534 29813669 -132786261 - MER102b DNA MER1_type -10 331 196 774 234 94 15 chrX 29815970 29816171 -132783759 + AluJo SINE Alu 6 222 -90 635 218 61 87 chrX 29816650 29816706 -132783224 + MER58A DNA MER1_type 1 57 -2363 2225 27 0 0 chrX 29816706 29816965 -132782965 - AluY SINE Alu -52 259 1 635 218 61 87 chrX 29816965 29817137 -132782793 + MER58A DNA MER1_type 57 223 -1 242 314 20 0 chrX 29817137 29817239 -132782691 - L1ME LINE L1 -298 5872 5769 2248 84 3 3 chrX 29817801 29818099 -132781831 - AluSp SINE Alu -15 298 1 321 289 134 53 chrX 29818837 29819121 -132780809 - LTR33 LTR ERVL -168 353 47 255 103 0 0 chrX 29819356 29819395 -132780535 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 544 294 94 0 chrX 29819654 29819814 -132780116 + MER5B DNA MER1_type 4 178 0 320 245 20 59 chrX 29820871 29820973 -132778957 + L1MC4 LINE L1 6608 6705 -1337 1701 234 5 13 chrX 29820984 29821381 -132778549 + MER45B DNA AcHobo 405 798 -242 1901 204 74 4 chrX 29821383 29821845 -132778085 + L1 LINE L1 4282 4775 -1371 1503 147 24 0 chrX 29821841 29822093 -132777837 + L1MA9 LINE L1 6023 6280 -32 * 5416 152 17 5 chrX 29822119 29823435 -132776495 + L1PA16 LINE L1 4758 6088 -78 402 264 22 0 chrX 29823441 29823532 -132776398 + LTR28 LTR ERV1 917 1009 -11 2315 101 0 0 chrX 29823953 29824259 -132775671 + AluSx SINE Alu 6 311 -1 240 279 116 6 chrX 29824690 29824862 -132775068 + HAL1 LINE L1 2227 2417 -90 26 0 0 0 chrX 29825053 29825079 -132774851 + AT_rich Low_complexity Low_complexity 1 26 0 313 307 83 19 chrX 29825227 29825432 -132774498 - L1ME LINE L1 -2023 5785 5568 1317 212 38 7 chrX 29825559 29825852 -132774078 - L1PB4 LINE L1 -3 6153 5852 2242 87 0 3 chrX 29826295 29826593 -132773337 - AluSx SINE Alu -15 297 1 25 31 0 0 chrX 29827002 29827034 -132772896 + AT_rich Low_complexity Low_complexity 1 32 0 288 361 54 31 chrX 29827128 29827646 -132772284 - L1ME LINE L1 -1926 4220 3691 312 276 50 44 chrX 29827799 29827980 -132771950 - L1ME LINE L1 -3038 3108 2927 639 270 6 6 chrX 29828473 29828651 -132771279 + MER5B DNA MER1_type 1 178 0 327 25 0 0 chrX 29829797 29829837 -132770093 + (CA)n Simple_repeat Simple_repeat 2 41 0 417 39 0 0 chrX 29830935 29830986 -132768944 + (CA)n Simple_repeat Simple_repeat 2 52 0 736 87 9 9 chrX 29830994 29831109 -132768821 + (TAGA)n Simple_repeat Simple_repeat 1 115 0 240 111 0 0 chrX 29831858 29831894 -132768036 + (TAG)n Simple_repeat Simple_repeat 3 38 0 606 280 90 53 chrX 29831903 29832140 -132767790 - MIR SINE MIR -1 261 5 240 286 33 33 chrX 29832515 29832606 -132767324 - L2 LINE L2 0 3272 3182 23 33 0 0 chrX 29833422 29833452 -132766478 + AT_rich Low_complexity Low_complexity 1 30 0 2178 121 0 0 chrX 29833812 29834119 -132765811 - AluSg SINE Alu -3 307 1 2217 117 7 0 chrX 29834540 29834849 -132765081 + AluSx SINE Alu 1 311 -1 183 174 109 22 chrX 29835553 29835599 -132764331 - L3 LINE CR1 -951 626 577 6197 96 10 3 chrX 29836228 29837582 -132762348 - L1PA13 LINE L1 -2 6161 4798 3393 123 66 11 chrX 29887582 29888144 -132711786 - MER51A LTR ERV1 -41 593 1 378 107 0 0 chrX 29888166 29888222 -132711708 + (A)n Simple_repeat Simple_repeat 1 56 0 2392 86 3 15 chrX 29888309 29888647 -132711283 - L1PB2 LINE L1 0 6151 5818 255 265 12 0 chrX 29889484 29889567 -132710363 + HAL1 LINE L1 62 145 -2362 502 299 10 18 chrX 29889583 29889775 -132710155 - L1MD3 LINE L1 -926 6882 6655 397 325 89 37 chrX 29889902 29890339 -132709591 - L1M4 LINE L1 -1450 4696 4237 234 286 0 0 chrX 29890415 29890485 -132709445 - L1M4 LINE L1 -1975 4171 4102 261 57 0 0 chrX 29890576 29890611 -132709319 + (CA)n Simple_repeat Simple_repeat 2 36 0 389 274 12 61 chrX 29890702 29890947 -132708983 + HAL1 LINE L1 810 1042 -1465 * 3635 223 33 7 chrX 29890944 29891888 -132708042 + L1M4 LINE L1 4010 4977 -1169 1215 286 110 18 chrX 29892142 29892870 -132707060 + L2 LINE L2 2366 3166 -147 239 209 22 77 chrX 29892844 29892935 -132706995 - L2 LINE L2 -100 3213 3128 * 251 292 0 0 chrX 29894094 29894183 -132705747 - L1MC4 LINE L1 -1337 6705 6617 233 154 39 19 chrX 29894189 29894241 -132705689 + L1MC4 LINE L1 2016 2068 -4358 * 263 253 23 0 chrX 29894222 29894309 -132705621 - L1MC4 LINE L1 -1339 6703 6615 245 207 17 0 chrX 29894277 29894335 -132705595 + L1MC4 LINE L1 2006 2064 -4362 * 315 292 0 0 chrX 29894334 29894423 -132705507 - L1MC4 LINE L1 -1339 6703 6615 246 289 0 0 chrX 29894422 29894512 -132705418 + L1MC4 LINE L1 6614 6703 -1339 * 251 322 0 0 chrX 29894508 29894598 -132705332 - L1MC4 LINE L1 -1339 6703 6614 232 260 0 62 chrX 29894542 29894638 -132705292 + L1MC4 LINE L1 6614 6703 -1339 * 569 260 0 11 chrX 29894679 29894860 -132705070 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 302 299 23 0 chrX 29894965 29895052 -132704878 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 238 322 0 0 chrX 29895053 29895140 -132704790 - L1MC4 LINE L1 -1340 6702 6616 230 226 19 17 chrX 29895056 29895161 -132704769 + L1MC4 LINE L1 1995 6985 -1337 * 230 218 0 0 chrX 29895157 29895212 -132704718 + L1MC4 LINE L1 6929 6983 -1339 233 255 0 0 chrX 29895213 29895264 -132704666 + (TA)n Simple_repeat Simple_repeat 2 52 0 246 270 22 0 chrX 29895265 29895354 -132704576 + L1MC4 LINE L1 6615 6705 -1337 1053 191 40 4 chrX 29895369 29895594 -132704336 + MER46A DNA MER2_type 2 234 -2 925 219 0 0 chrX 29895804 29895968 -132703962 + MER5A DNA MER1_type 3 166 -23 292 372 101 65 chrX 29896269 29896667 -132703263 + L2 LINE L2 2854 3265 -7 1831 144 49 3 chrX 29897528 29897854 -132702076 + MER47A DNA MER2_type 26 366 0 309 197 0 0 chrX 29898769 29898835 -132701095 + (TG)n Simple_repeat Simple_repeat 2 67 0 5055 75 7 1 chrX 29899971 29900649 -132699281 + L1PA13 LINE L1 5482 6163 0 4949 88 0 0 chrX 29900853 29901513 -132698417 + PABL_A LTR ERV1 1 660 0 21 0 0 0 chrX 29902572 29902593 -132697337 + AT_rich Low_complexity Low_complexity 1 21 0 1990 127 0 0 chrX 29905357 29905640 -132694290 + AluSx SINE Alu 1 283 -29 201 289 89 22 chrX 29905917 29906007 -132693923 + L2 LINE L2 3200 3295 -18 24 32 0 0 chrX 29906400 29906431 -132693499 + AT_rich Low_complexity Low_complexity 1 31 0 30 45 0 0 chrX 29907505 29907549 -132692381 + AT_rich Low_complexity Low_complexity 1 44 0 257 314 70 0 chrX 29907854 29907940 -132691990 + MER91C DNA MER1_type 36 127 -13 22 0 0 0 chrX 29908641 29908663 -132691267 + AT_rich Low_complexity Low_complexity 1 22 0 208 380 141 0 chrX 29909899 29910175 -132689755 - L2 LINE L2 -4 3309 2995 1593 193 0 20 chrX 29910529 29910824 -132689106 - AluJo SINE Alu -23 289 1 2293 45 72 0 chrX 29911019 29911309 -132688621 + AluY SINE Alu 1 311 0 311 295 32 0 chrX 29911832 29911927 -132688003 + L2 LINE L2 3174 3271 -1 1954 195 40 42 chrX 29911993 29912495 -132687435 + MLT1D LTR MaLR 3 503 -2 275 369 40 13 chrX 29912715 29912864 -132687066 - L2 LINE L2 -210 3062 2910 207 114 0 0 chrX 29913461 29913496 -132686434 + (CA)n Simple_repeat Simple_repeat 2 36 0 211 284 15 45 chrX 29913598 29913665 -132686265 + L2 LINE L2 3207 3271 -1 540 286 77 6 chrX 29914561 29914729 -132685201 + MIR SINE MIR 25 204 -58 359 344 6 55 chrX 29915733 29915896 -132684034 + LTR16C LTR ERVL 71 225 -266 1827 124 11 11 chrX 29916094 29916412 -132683518 + AluSg SINE Alu 1 318 0 572 292 82 50 chrX 29916688 29917030 -132682900 + MLT1I LTR MaLR 57 409 0 2366 37 3 30 chrX 29918032 29918332 -132681598 + AluY SINE Alu 1 292 -19 247 280 15 30 chrX 29918636 29918768 -132681162 + (TA)n Simple_repeat Simple_repeat 1 130 0 287 225 337 0 chrX 29918980 29919069 -132680861 + MIR SINE MIR 36 154 -108 370 337 19 6 chrX 29919084 29919253 -132680677 + MIR3 SINE MIR 25 198 -10 809 302 14 0 chrX 29919321 29919543 -132680387 + MIR SINE MIR 22 246 -16 195 69 0 0 chrX 29920728 29920757 -132679173 + (GA)n Simple_repeat Simple_repeat 2 30 0 25 31 0 0 chrX 29920795 29920827 -132679103 + AT_rich Low_complexity Low_complexity 1 32 0 304 379 24 12 chrX 29921076 29921324 -132678606 - L1ME LINE L1 -384 5737 5487 273 119 0 0 chrX 29921413 29921455 -132678475 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 2176 112 3 3 chrX 29923316 29923619 -132676311 + AluSx SINE Alu 1 303 -9 189 0 0 0 chrX 29923948 29923969 -132675961 + (CACCC)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chrX 29924223 29924252 -132675678 + AT_rich Low_complexity Low_complexity 1 29 0 1395 275 50 7 chrX 29924393 29924837 -132675093 + L1MCc LINE L1 17 479 -5944 251 235 24 71 chrX 29924998 29925083 -132674847 + L1MCc LINE L1 693 773 -5650 * 1567 243 11 60 chrX 29925078 29925663 -132674267 + L1MCc LINE L1 1014 1737 -4887 1618 6 0 0 chrX 29928290 29928472 -132671458 - L1PA4 LINE L1 -2 6153 5972 238 191 0 0 chrX 29928751 29928798 -132671132 + Alu SINE Alu 3 49 -253 2287 90 0 0 chrX 29928940 29929229 -132670701 + AluSx SINE Alu 3 291 -21 214 195 52 78 chrX 29929920 29929997 -132669933 - MIR SINE MIR -72 190 116 429 95 0 0 chrX 29930086 29930149 -132669781 + (CA)n Simple_repeat Simple_repeat 2 64 0 200 259 74 115 chrX 29931308 29931477 -132668453 - MIR3 SINE MIR -70 138 10 621 278 49 19 chrX 29931792 29931997 -132667933 - MIR SINE MIR -18 244 34 198 226 61 104 chrX 29932524 29932639 -132667291 + L2 LINE L2 2309 2418 -896 2315 87 0 13 chrX 29933223 29933533 -132666397 + AluSx SINE Alu 3 308 -4 24 77 0 0 chrX 29934538 29934590 -132665340 + AT_rich Low_complexity Low_complexity 1 52 0 2061 132 0 0 chrX 29936022 29936326 -132663604 - AluSx SINE Alu -8 304 1 2277 96 0 3 chrX 29936461 29936763 -132663167 - AluSx SINE Alu -11 301 1 883 252 10 101 chrX 29937301 29937568 -132662362 - LTR37B LTR ERV1 -73 395 178 1240 129 9 14 chrX 29937568 29937778 -132662152 + L1MA2 LINE L1 6090 6298 -6 883 252 10 101 chrX 29937778 29937927 -132662003 - LTR37B LTR ERV1 -290 178 17 271 361 101 0 chrX 29937982 29938101 -132661829 - L2 LINE L2 -36 3236 3106 2447 74 0 6 chrX 29938131 29938443 -132661487 + AluSg SINE Alu 1 310 0 311 367 60 50 chrX 29938650 29938969 -132660961 - L2 LINE L2 -428 2886 2565 207 218 0 0 chrX 29939097 29939152 -132660778 + (TA)n Simple_repeat Simple_repeat 1 55 0 611 319 165 18 chrX 29939427 29940245 -132659685 - L2 LINE L2 -560 2754 1739 557 277 32 72 chrX 29940544 29940748 -132659182 + MIR SINE MIR 13 207 -55 455 250 140 0 chrX 29940748 29940912 -132659018 - MER5A DNA MER1_type 0 189 3 557 277 32 72 chrX 29940912 29940956 -132658974 + MIR SINE MIR 207 251 -11 2310 89 0 6 chrX 29941240 29941553 -132658377 - AluSq SINE Alu -2 311 1 255 61 0 0 chrX 29941571 29941604 -132658326 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1696 241 96 46 chrX 29942496 29942758 -132657172 - L1ME3 LINE L1 -115 6047 5800 2314 103 0 3 chrX 29942758 29943068 -132656862 - AluSx SINE Alu -1 311 3 1696 241 96 46 chrX 29943068 29943189 -132656741 - L1ME3 LINE L1 -362 5800 5687 1671 158 7 59 chrX 29943189 29943493 -132656437 - AluJb SINE Alu -24 288 1 1696 241 96 46 chrX 29943493 29944038 -132655892 - L1ME3 LINE L1 -475 5687 5075 306 115 0 0 chrX 29944247 29944299 -132655631 + (TC)n Simple_repeat Simple_repeat 1 52 0 2145 180 97 5 chrX 29944921 29945365 -132654565 - MER31A LTR ERV1 0 485 1 2244 102 0 13 chrX 29945443 29945747 -132654183 + AluSq SINE Alu 3 302 -11 254 270 0 0 chrX 29945802 29945865 -132654065 + MER103 DNA DNA 18 80 -86 186 43 0 0 chrX 29947358 29947381 -132652549 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2176 96 0 0 chrX 29947386 29947667 -132652263 - AluSx SINE Alu -31 281 1 235 347 35 35 chrX 29948572 29948716 -132651214 - MER5B DNA MER1_type -2 176 33 2095 129 0 0 chrX 29949497 29949815 -132650115 + AluSx SINE Alu 1 318 0 2138 112 17 0 chrX 29951060 29951354 -132648576 + AluSx SINE Alu 1 299 -13 210 222 0 0 chrX 29951354 29951390 -132648540 + polypurine Low_complexity Low_complexity 1 36 0 2236 83 0 14 chrX 29952449 29952773 -132647157 + AluSx SINE Alu 1 320 0 307 294 20 29 chrX 29953058 29953160 -132646770 + MER5A DNA MER1_type 89 189 0 188 315 45 56 chrX 29953189 29953278 -132646652 - MER5B DNA MER1_type -90 88 1 185 277 27 80 chrX 29953550 29953662 -132646268 - L2 LINE L2 -829 2485 2380 24 67 0 0 chrX 29955439 29955484 -132644446 + AT_rich Low_complexity Low_complexity 1 45 0 315 0 0 0 chrX 29955532 29955567 -132644363 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 351 78 0 0 chrX 29955566 29955617 -132644313 + (TA)n Simple_repeat Simple_repeat 1 51 0 583 244 24 8 chrX 29955933 29956060 -132643870 + MIR SINE MIR 20 148 -114 1702 117 121 15 chrX 29956062 29956335 -132643595 + AluSx SINE Alu 1 302 0 2267 121 0 0 chrX 29957028 29957341 -132642589 + AluSq SINE Alu 1 313 0 398 326 74 19 chrX 29958172 29958387 -132641543 - MIR SINE MIR 0 262 36 2194 89 0 4 chrX 29958445 29958768 -132641162 + AluSq SINE Alu 5 326 0 3023 113 2 0 chrX 29958870 29959303 -132640627 + MER57B LTR ERV1 1 434 0 2081 145 100 35 chrX 29959372 29959674 -132640256 + MSTC LTR MaLR 1 337 -91 3735 159 26 31 chrX 29959674 29960405 -132639525 + LTR8A LTR ERV1 1 727 0 2081 145 100 35 chrX 29960405 29960503 -132639427 + MSTC LTR MaLR 337 427 -1 4303 122 6 51 chrX 29960586 29961294 -132638636 + LTR8 LTR ERV1 1 676 -15 281 320 20 10 chrX 29961379 29961479 -132638451 + MER81 DNA DNA 1 101 -13 5160 73 24 0 chrX 29961637 29962312 -132637618 - LTR8 LTR ERV1 0 691 1 45315 75 23 11 chrX 29962312 29963931 -132635999 - HUERS-P1 LTR ERV1 0 6263 4664 2105 66 77 7 chrX 29963931 29964204 -132635726 - AluSp SINE Alu -21 292 1 45315 75 23 11 chrX 29964204 29965867 -132634063 - HUERS-P1 LTR ERV1 -1599 4664 3021 312 48 0 0 chrX 29965867 29965909 -132634021 + (CA)n Simple_repeat Simple_repeat 1 42 0 45315 75 23 11 chrX 29965909 29966154 -132633776 - HUERS-P1 LTR ERV1 -3242 3021 2780 2213 98 0 46 chrX 29966154 29966481 -132633449 - AluSx SINE Alu 0 312 1 45315 75 23 11 chrX 29966481 29967929 -132632001 - HUERS-P1 LTR ERV1 -3483 2780 1199 222 37 0 0 chrX 29967929 29967956 -132631974 + (GA)n Simple_repeat Simple_repeat 2 28 0 45315 75 23 11 chrX 29967956 29969169 -132630761 - HUERS-P1 LTR ERV1 -5064 1199 1 4262 71 5 13 chrX 29969169 29969814 -132630116 - LTR8 LTR ERV1 0 691 1 238 184 26 0 chrX 29971640 29971716 -132628214 + (TA)n Simple_repeat Simple_repeat 1 78 0 488 271 138 29 chrX 29972480 29972690 -132627240 + MIR SINE MIR 29 261 -1 1737 149 54 14 chrX 29972942 29973237 -132626693 - AluSx SINE Alu -5 307 1 1092 46 0 0 chrX 29973462 29973592 -132626338 + AluY SINE Alu 167 296 -15 27 62 0 0 chrX 29973610 29973658 -132626272 + AT_rich Low_complexity Low_complexity 1 48 0 2389 75 0 3 chrX 29973957 29974250 -132625680 - AluSc SINE Alu -11 298 7 668 184 0 0 chrX 29974315 29974429 -132625501 + FLAM_A SINE Alu 11 124 -18 313 233 11 0 chrX 29975218 29975308 -132624622 + (TTATA)n Simple_repeat Simple_repeat 5 95 0 251 287 50 20 chrX 29975746 29975847 -132624083 - MIR SINE MIR -71 191 88 183 367 33 17 chrX 29977523 29977643 -132622287 + L2 LINE L2 2630 2751 -563 2217 102 0 3 chrX 29977741 29978067 -132621863 - AluSx SINE Alu 0 312 1 190 319 34 92 chrX 29978226 29978345 -132621585 + L2 LINE L2 3122 3233 -39 29 60 0 0 chrX 29978728 29978778 -132621152 + AT_rich Low_complexity Low_complexity 1 50 0 287 301 98 16 chrX 29979109 29979232 -132620698 - L2 LINE L2 -1 3271 3139 2287 103 0 3 chrX 29979417 29979728 -132620202 + AluSx SINE Alu 1 310 -2 2600 52 0 0 chrX 29980857 29981166 -132618764 - AluY SINE Alu -2 309 1 2206 118 3 3 chrX 29981394 29981698 -132618232 - AluSq SINE Alu -9 304 1 2292 94 3 13 chrX 29982500 29982807 -132617123 - AluSx SINE Alu -8 304 1 560 188 30 0 chrX 29982808 29982909 -132617021 - MER3 DNA MER1_type -96 113 10 4502 57 3 20 chrX 29983523 29984107 -132615823 - LTR10C LTR ERV1 -7 584 11 616 263 58 58 chrX 29984112 29984420 -132615510 + LTR33 LTR ERVL 212 519 -2 21 57 0 0 chrX 29985234 29985269 -132614661 + AT_rich Low_complexity Low_complexity 1 35 0 2090 130 3 0 chrX 29985302 29985610 -132614320 + AluSp SINE Alu 1 309 -4 352 324 58 79 chrX 29986097 29986238 -132613692 + MIR SINE MIR 21 156 -106 2301 92 0 16 chrX 29986238 29986555 -132613375 + AluSx SINE Alu 1 312 0 352 324 58 79 chrX 29986555 29986654 -132613276 + MIR SINE MIR 156 256 -6 183 42 0 0 chrX 29987200 29987224 -132612706 + (T)n Simple_repeat Simple_repeat 1 24 0 286 310 50 66 chrX 29987758 29988000 -132611930 - MLT1L LTR MaLR -377 238 1 3380 57 9 7 chrX 29988167 29988609 -132611321 + LTR7 LTR ERV1 1 443 -7 2639 75 119 5 chrX 29989198 29989600 -132610330 + LTR7 LTR ERV1 1 448 -2 5182 163 33 1 chrX 29989972 29990939 -132608991 + L1PB3 LINE L1 4793 5813 -341 293 0 27 0 chrX 29990939 29990976 -132608954 + (CA)n Simple_repeat Simple_repeat 2 39 0 5182 163 33 1 chrX 29990976 29991330 -132608600 + L1PB3 LINE L1 5813 6154 0 2208 88 0 3 chrX 29991921 29992205 -132607725 + AluSq SINE Alu 1 283 -30 183 80 0 0 chrX 29992634 29992659 -132607271 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1889 119 7 27 chrX 29993164 29993458 -132606472 - AluSx SINE Alu -24 288 1 2113 98 37 3 chrX 29993486 29993782 -132606148 + AluSq SINE Alu 1 306 -7 21 36 0 0 chrX 29993833 29993861 -132606069 + AT_rich Low_complexity Low_complexity 1 28 0 186 71 0 0 chrX 29994858 29994886 -132605044 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 188 375 31 25 chrX 29994891 29995051 -132604879 + L2 LINE L2 2876 3036 -236 1190 182 139 73 chrX 29995162 29995601 -132604329 - Charlie4a DNA MER1_type -2 506 39 50 18 0 0 chrX 29995797 29995854 -132604076 + AT_rich Low_complexity Low_complexity 1 57 0 2061 112 0 30 chrX 29996499 29996803 -132603127 - AluSq SINE Alu -18 295 1 24 32 0 0 chrX 29996903 29996934 -132602996 + AT_rich Low_complexity Low_complexity 1 31 0 1825 130 42 13 chrX 29996954 29997271 -132602659 + MER44D DNA MER2_type 1 606 -3 1064 161 11 0 chrX 29997699 29997873 -132602057 + AluSg/x SINE Alu 135 310 0 2378 76 0 10 chrX 29997947 29998249 -132601681 - AluSq SINE Alu -14 299 1 2306 87 3 10 chrX 29999005 29999305 -132600625 - AluSq SINE Alu -15 298 1 21 57 0 0 chrX 29999587 29999622 -132600308 + AT_rich Low_complexity Low_complexity 1 35 0 2364 47 20 14 chrX 30000404 30000701 -132599229 - AluY SINE Alu -12 299 1 2022 125 3 0 chrX 30000808 30001111 -132598819 + AluSx SINE Alu 5 308 -4 1661 162 11 0 chrX 30001121 30001386 -132598544 + AluJb SINE Alu 1 268 -44 24 0 0 0 chrX 30001955 30001979 -132597951 + AT_rich Low_complexity Low_complexity 1 24 0 2018 144 35 11 chrX 30002047 30002414 -132597516 + L1MA9 LINE L1 5932 6307 -5 235 302 177 24 chrX 30002448 30002615 -132597315 - MIR SINE MIR -42 220 31 2742 7 0 0 chrX 30003005 30003302 -132596628 - AluY SINE Alu -14 297 1 230 172 17 35 chrX 30004103 30004161 -132595769 + (TA)n Simple_repeat Simple_repeat 1 57 0 192 394 0 0 chrX 30004309 30004403 -132595527 - L2 LINE L2 0 3313 3220 355 297 275 22 chrX 30004410 30004730 -132595200 - L2 LINE L2 -339 2975 2575 832 292 55 39 chrX 30005016 30005379 -132594551 - LTR16C LTR ERVL 0 491 123 2540 62 7 0 chrX 30005491 30005798 -132594132 + AluSx SINE Alu 1 309 -3 242 222 19 0 chrX 30005835 30005889 -132594041 - MIR3 SINE MIR -34 174 120 2199 112 0 7 chrX 30006121 30006425 -132593505 - AluSx SINE Alu -10 302 1 2028 133 3 0 chrX 30006836 30007158 -132592772 + AluSx SINE Alu 1 312 0 27 62 0 0 chrX 30007223 30007271 -132592659 + AT_rich Low_complexity Low_complexity 1 48 0 1768 184 15 3 chrX 30007853 30008184 -132591746 + MER7A DNA MER2_type 14 346 0 2214 116 0 3 chrX 30008297 30008608 -132591322 - AluSx SINE Alu 0 312 3 2100 124 3 7 chrX 30008775 30009082 -132590848 + AluSx SINE Alu 1 306 -6 2326 93 0 3 chrX 30009088 30009399 -132590531 + AluSg SINE Alu 1 310 0 214 337 105 0 chrX 30009469 30009555 -132590375 - L2 LINE L2 0 3313 3219 2445 78 3 0 chrX 30009635 30009942 -132589988 + AluSp SINE Alu 1 308 -5 25 65 0 0 chrX 30010221 30010267 -132589663 + AT_rich Low_complexity Low_complexity 1 46 0 994 87 0 0 chrX 30010822 30010948 -132588982 + AluSg/x SINE Alu 172 297 -13 30 27 0 0 chrX 30011072 30011109 -132588821 + AT_rich Low_complexity Low_complexity 1 37 0 840 169 0 30 chrX 30011266 30011432 -132588498 + MER5A DNA MER1_type 29 189 0 28 0 0 0 chrX 30011821 30011849 -132588081 + AT_rich Low_complexity Low_complexity 1 28 0 228 253 0 0 chrX 30012492 30012567 -132587363 + (TA)n Simple_repeat Simple_repeat 1 75 0 279 0 0 0 chrX 30014218 30014249 -132585681 + (T)n Simple_repeat Simple_repeat 1 31 0 229 222 0 0 chrX 30014257 30014302 -132585628 + L2 LINE L2 3262 3306 -7 228 35 0 0 chrX 30015437 30015466 -132584464 + (TA)n Simple_repeat Simple_repeat 1 29 0 2284 50 14 0 chrX 30015466 30015743 -132584187 - AluSp SINE Alu -32 281 1 320 248 119 34 chrX 30015751 30015952 -132583978 - MIR SINE MIR -11 251 35 338 263 203 0 chrX 30015958 30016076 -132583854 - MER5A DNA MER1_type -1 188 47 192 40 0 0 chrX 30016077 30016102 -132583828 + (CTG)n Simple_repeat Simple_repeat 1 25 0 542 227 187 40 chrX 30016145 30016295 -132583635 + MER5B DNA MER1_type 3 174 -4 322 266 162 26 chrX 30016310 30016464 -132583466 + MER5B DNA MER1_type 3 177 -1 225 333 0 14 chrX 30017510 30017579 -132582351 + MIR SINE MIR 76 143 -119 572 299 85 31 chrX 30017609 30017833 -132582097 + MIR SINE MIR 27 262 0 1089 167 5 9 chrX 30019421 30019636 -132580294 + L1MA7 LINE L1 6077 6290 -1 263 302 47 57 chrX 30020069 30020175 -132579755 + L2 LINE L2 3133 3237 -35 384 237 68 26 chrX 30020309 30020499 -132579431 + L1ME4a LINE L1 5709 5906 -215 747 296 28 24 chrX 30020526 30020776 -132579154 + MIR SINE MIR 12 262 0 304 294 84 8 chrX 30020803 30020922 -132579008 + L1ME4a LINE L1 5989 6116 -5 1360 150 154 19 chrX 30020925 30021191 -132578739 + AluJo SINE Alu 1 302 0 1877 194 14 19 chrX 30021377 30021744 -132578186 + MLT1A1 LTR MaLR 1 365 0 29 94 0 0 chrX 30021844 30021929 -132578001 + AT_rich Low_complexity Low_complexity 1 85 0 215 226 19 19 chrX 30022553 30022606 -132577324 + L2 LINE L2 3261 3313 0 636 215 19 148 chrX 30022839 30023095 -132576835 - MIR SINE MIR -25 237 15 202 244 134 47 chrX 30023133 30023260 -132576670 - MIR SINE MIR -58 204 67 1334 184 62 0 chrX 30023923 30024179 -132575751 + AluJo SINE Alu 5 276 -36 377 136 0 17 chrX 30024180 30024239 -132575691 + MSTA LTR MaLR 1 58 -368 615 155 0 0 chrX 30024239 30024336 -132575594 - AluSq SINE Alu -13 300 204 289 146 0 0 chrX 30024336 30024377 -132575553 - AluSq SINE Alu -132 171 131 * 2299 157 16 0 chrX 30024374 30024750 -132575180 + MSTA LTR MaLR 47 428 0 252 0 0 0 chrX 30024761 30024789 -132575141 + (A)n Simple_repeat Simple_repeat 1 28 0 487 292 45 7 chrX 30025369 30025523 -132574407 + MIR3 SINE MIR 44 203 -5 587 249 70 35 chrX 30025920 30026121 -132573809 - MIR SINE MIR -54 208 1 2228 113 3 0 chrX 30026974 30027276 -132572654 - AluSq SINE Alu -9 304 2 22 0 0 0 chrX 30028058 30028080 -132571850 + AT_rich Low_complexity Low_complexity 1 22 0 291 333 89 30 chrX 30028230 30028398 -132571532 - MIR SINE MIR -79 183 6 2441 117 5 17 chrX 30029068 30029479 -132570451 + L1MA4 LINE L1 5894 6299 -1 422 309 130 45 chrX 30030130 30030399 -132569531 + L2 LINE L2 2928 3219 -94 207 241 19 37 chrX 30030431 30030485 -132569445 + MIR SINE MIR 93 145 -63 26 50 0 0 chrX 30030510 30030550 -132569380 + AT_rich Low_complexity Low_complexity 1 40 0 1138 141 45 56 chrX 30030655 30030768 -132569162 - L1MB7 LINE L1 0 6184 6071 2252 107 0 28 chrX 30030768 30031086 -132568844 - AluSc SINE Alu 0 309 1 1138 141 45 56 chrX 30031086 30031241 -132568689 - L1MB7 LINE L1 -113 6071 5919 31 26 0 0 chrX 30031244 30031282 -132568648 + AT_rich Low_complexity Low_complexity 1 38 0 507 297 71 29 chrX 30031302 30031539 -132568391 - MIR SINE MIR 0 262 20 2156 101 3 3 chrX 30031718 30032014 -132567916 - AluSg SINE Alu -14 296 1 21 82 0 0 chrX 30032715 30032764 -132567166 + AT_rich Low_complexity Low_complexity 1 49 0 2231 236 31 34 chrX 30033744 30033864 -132566066 + MLT1H1 LTR MaLR 3 122 -433 3013 142 13 55 chrX 30033864 30034413 -132565517 - MER1A DNA MER1_type -1 526 1 2231 236 31 34 chrX 30034413 30034847 -132565083 + MLT1H1 LTR MaLR 122 555 0 296 300 150 61 chrX 30035117 30035185 -132564745 + L2 LINE L2 2809 2870 -443 2272 93 3 3 chrX 30035185 30035487 -132564443 - AluSx SINE Alu -10 302 1 296 300 150 61 chrX 30035487 30035745 -132564185 + L2 LINE L2 2870 3164 -149 405 274 59 10 chrX 30036496 30036598 -132563332 + MIR SINE MIR 41 147 -115 229 50 0 50 chrX 30036601 30036641 -132563289 + L1MA10 LINE L1 6296 6333 -1 276 30 0 0 chrX 30037049 30037082 -132562848 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1939 130 0 14 chrX 30037082 30037366 -132562564 - AluSx SINE Alu -32 280 1 2254 102 3 3 chrX 30038021 30038334 -132561596 + AluSp SINE Alu 1 313 0 24 67 0 0 chrX 30038504 30038549 -132561381 + AT_rich Low_complexity Low_complexity 1 45 0 2058 108 0 0 chrX 30039007 30039275 -132560655 + AluSq SINE Alu 1 268 -45 2272 116 0 0 chrX 30040206 30040508 -132559422 - AluSx SINE Alu -10 302 1 1234 193 133 11 chrX 30040570 30040834 -132559096 + AluJo SINE Alu 2 297 -5 215 200 0 22 chrX 30041714 30041759 -132558171 - L3 LINE CR1 -1098 479 436 1771 212 54 62 chrX 30041951 30042417 -132557513 - MLT1C LTR MaLR 0 467 6 2112 108 3 7 chrX 30042566 30042861 -132557069 + AluSq SINE Alu 1 294 -19 4536 62 0 0 chrX 30044181 30044750 -132555180 - L1PA7 LINE L1 -3 6151 5583 2196 150 23 0 chrX 30044834 30045188 -132554742 + MER47A DNA MER2_type 3 364 -2 384 281 92 38 chrX 30045244 30045429 -132554501 - MER91A DNA MER1_type 0 196 2 252 280 84 19 chrX 30045958 30046065 -132553865 - MIR SINE MIR -60 202 89 549 271 17 40 chrX 30046108 30046285 -132553645 - MIR SINE MIR -27 235 63 402 338 65 0 chrX 30046316 30046470 -132553460 - MIR SINE MIR -50 212 49 228 397 34 11 chrX 30046945 30047124 -132552806 + MIR SINE MIR 14 196 -66 2074 105 3 0 chrX 30048147 30048433 -132551497 + AluSx SINE Alu 1 287 -25 228 278 0 22 chrX 30048454 30048544 -132551386 - L1MC4 LINE L1 -1339 6703 6616 21 36 0 0 chrX 30048920 30048948 -132550982 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chrX 30049153 30049181 -132550749 + AT_rich Low_complexity Low_complexity 1 28 0 364 255 113 14 chrX 30049658 30049799 -132550131 - MER117 DNA MER1_type -34 163 9 207 100 0 0 chrX 30051643 30051673 -132548257 + (TA)n Simple_repeat Simple_repeat 2 31 0 278 302 73 0 chrX 30051869 30051965 -132547965 - L2 LINE L2 -2 3311 3209 236 266 13 0 chrX 30052326 30052405 -132547525 - L1MC4 LINE L1 0 8042 7963 721 308 30 13 chrX 30052632 30052866 -132547064 + MIR SINE MIR 3 240 -22 213 94 0 0 chrX 30052993 30053025 -132546905 + (TG)n Simple_repeat Simple_repeat 2 33 0 783 175 0 19 chrX 30054584 30054738 -132545192 - L1PB3 LINE L1 -1 6153 6003 203 206 0 0 chrX 30055059 30055093 -132544837 + L2 LINE L2 3193 3226 -87 27 0 0 0 chrX 30055243 30055270 -132544660 + AT_rich Low_complexity Low_complexity 1 27 0 1271 211 50 0 chrX 30055369 30055668 -132544262 - MER33 DNA MER1_type -10 314 1 1104 226 4 8 chrX 30055727 30055993 -132543937 - L1M4 LINE L1 -1157 4989 4725 293 264 42 0 chrX 30056996 30057068 -132542862 - L2 LINE L2 -4 3268 3194 186 43 0 0 chrX 30058927 30058950 -132540980 + (A)n Simple_repeat Simple_repeat 1 23 0 184 286 170 27 chrX 30060398 30060545 -132539385 - MIR SINE MIR -13 249 82 * 360 298 84 8 chrX 30060519 30060650 -132539280 + MIR SINE MIR 20 160 -102 481 270 25 70 chrX 30060740 30060940 -132538990 - MIR SINE MIR -14 248 58 225 0 0 0 chrX 30061452 30061477 -132538453 + (TG)n Simple_repeat Simple_repeat 1 25 0 2171 114 0 3 chrX 30061546 30061853 -132538077 + AluSq SINE Alu 1 306 -7 798 293 91 28 chrX 30061853 30062215 -132537715 - LTR16A1 LTR ERVL -70 387 3 2155 94 0 3 chrX 30062263 30062578 -132537352 - AluSx SINE Alu 0 314 1 850 161 13 0 chrX 30062586 30062735 -132537195 - L1MB1 LINE L1 -1 6167 6017 569 287 67 12 chrX 30063143 30063397 -132536533 + MLT1J LTR MaLR 244 511 0 2535 49 0 3 chrX 30064304 30064612 -132535318 + AluY SINE Alu 1 307 -4 2183 98 20 0 chrX 30064731 30065028 -132534902 - AluSp SINE Alu -10 303 1 255 125 0 0 chrX 30065316 30065356 -132534574 + (CA)n Simple_repeat Simple_repeat 1 40 0 609 334 81 62 chrX 30065459 30065926 -132534004 + MLT1K LTR MaLR 81 556 -32 183 377 82 0 chrX 30065986 30066108 -132533822 + MIR3 SINE MIR 31 162 -46 485 242 24 8 chrX 30066452 30066576 -132533354 + MIR SINE MIR 119 244 -18 24 0 0 0 chrX 30067122 30067146 -132532784 + AT_rich Low_complexity Low_complexity 1 24 0 1653 171 0 30 chrX 30067167 30067466 -132532464 - AluJo SINE Alu -22 290 1 23 101 0 0 chrX 30067971 30068050 -132531880 + AT_rich Low_complexity Low_complexity 1 79 0 21 0 0 0 chrX 30069489 30069510 -132530420 + AT_rich Low_complexity Low_complexity 1 21 0 2497 71 0 0 chrX 30069604 30069914 -132530016 - AluSg SINE Alu 0 310 1 23 54 0 0 chrX 30070132 30070169 -132529761 + AT_rich Low_complexity Low_complexity 1 37 0 470 241 57 43 chrX 30070204 30070345 -132529585 + MIR SINE MIR 50 192 -70 222 344 71 52 chrX 30070363 30070671 -132529259 + L2 LINE L2 2127 2440 -874 570 113 105 23 chrX 30070761 30070894 -132529036 + MER103 DNA DNA 1 144 -22 25 31 0 0 chrX 30071505 30071537 -132528393 + AT_rich Low_complexity Low_complexity 1 32 0 257 231 26 26 chrX 30072687 30072765 -132527165 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 273 294 43 11 chrX 30072970 30073062 -132526868 + MIR3 SINE MIR 114 208 0 255 31 0 0 chrX 30073127 30073159 -132526771 + (TC)n Simple_repeat Simple_repeat 1 32 0 2018 160 51 11 chrX 30073575 30073950 -132525980 + MLT1B LTR MaLR 1 390 0 2836 16 0 0 chrX 30075361 30075679 -132524251 - AluYb8 SINE Alu 0 318 1 702 0 114 0 chrX 30075756 30075914 -132524016 + (TA)n Simple_repeat Simple_repeat 1 176 0 2119 124 0 6 chrX 30076302 30076616 -132523314 - AluSx SINE Alu 0 312 1 2215 112 0 0 chrX 30077917 30078212 -132521718 + AluSx SINE Alu 1 295 -17 189 363 37 22 chrX 30078766 30078901 -132521029 - L2 LINE L2 0 3313 3177 315 0 0 0 chrX 30080625 30080660 -132519270 + (TG)n Simple_repeat Simple_repeat 2 36 0 306 402 61 12 chrX 30081074 30081400 -132518530 - L2 LINE L2 -340 2974 2633 246 268 0 0 chrX 30081676 30081732 -132518198 + L2 LINE L2 3254 3309 -4 4081 214 55 32 chrX 30082125 30082334 -132517596 - L1MD2 LINE L1 -10 6349 6146 210 37 0 0 chrX 30082334 30082361 -132517569 + (TG)n Simple_repeat Simple_repeat 1 27 0 4081 214 55 32 chrX 30082361 30083222 -132516708 - L1MD2 LINE L1 -213 6146 5254 1165 320 106 43 chrX 30083790 30083970 -132515960 - L2 LINE L2 -337 2977 2810 180 0 0 0 chrX 30083970 30083990 -132515940 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1165 320 106 43 chrX 30083990 30084818 -132515112 - L2 LINE L2 -504 2810 1905 23 68 0 0 chrX 30085487 30085531 -132514399 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chrX 30085706 30085736 -132514194 + AT_rich Low_complexity Low_complexity 1 30 0 2355 88 3 0 chrX 30085818 30086123 -132513807 - AluSx SINE Alu -6 306 1 321 276 26 86 chrX 30086372 30086488 -132513442 - MER91C DNA MER1_type -18 122 14 574 349 13 8 chrX 30087164 30087399 -132512531 + MIR SINE MIR 15 250 -12 707 365 59 13 chrX 30088837 30089308 -132510622 + L2 LINE L2 2485 2977 -337 333 267 0 23 chrX 30089545 30089631 -132510299 + L2 LINE L2 3189 3272 0 191 35 0 35 chrX 30091239 30091268 -132508662 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1434 85 25 0 chrX 30091762 30091963 -132507967 - L1PA13 LINE L1 -2 6161 5956 305 206 147 0 chrX 30093287 30093389 -132506541 + MER69A DNA AcHobo 48 164 -13 572 205 154 13 chrX 30097920 30098076 -132501854 + MER5A DNA MER1_type 11 188 -1 1790 208 157 50 chrX 30098518 30099138 -132500792 - L1MC2 LINE L1 0 6740 6073 492 209 5 105 chrX 30099181 30099391 -132500539 - L1MC2 LINE L1 -1486 5054 4866 1627 203 4 0 chrX 30099564 30099845 -132500085 - AluJo SINE Alu -30 282 1 4189 180 21 26 chrX 30099894 30099945 -132499985 - L1 LINE L1 -760 5780 5730 1582 174 42 3 chrX 30099945 30100232 -132499698 + AluJb SINE Alu 1 298 -14 4189 180 21 26 chrX 30100232 30101145 -132498785 - L1 LINE L1 -810 5730 4821 2278 120 6 8 chrX 30101146 30101503 -132498427 + L1PA16 LINE L1 5802 6157 -9 1965 272 29 30 chrX 30102214 30102507 -132497423 - L1M4 LINE L1 -1535 4611 4319 782 179 26 0 chrX 30102507 30102663 -132497267 - L1MB1 LINE L1 -1 6167 6008 1965 272 29 30 chrX 30102663 30103123 -132496807 - L1M4 LINE L1 -1827 4319 3859 531 232 7 7 chrX 30103131 30103282 -132496648 - L1M4 LINE L1 -2402 3744 3594 * 2538 214 127 38 chrX 30103273 30104187 -132495743 - L1MC2 LINE L1 -4656 1884 890 441 0 0 0 chrX 30104199 30104248 -132495682 + (TG)n Simple_repeat Simple_repeat 2 50 0 470 323 5 15 chrX 30104726 30104921 -132495009 - LTR33 LTR ERVL -1 520 328 6205 208 68 28 chrX 30106402 30107920 -132492010 + L1MC1 LINE L1 3121 4577 -1756 1978 119 0 18 chrX 30107920 30108230 -132491700 + AluSx SINE Alu 1 305 0 6205 208 68 28 chrX 30108230 30109786 -132490144 + L1MC1 LINE L1 4577 6327 -6 4904 221 28 26 chrX 30109761 30111680 -132488250 + L1MD1 LINE L1 4288 6217 -25 * 233 314 0 0 chrX 30111697 30111748 -132488182 - MER58 DNA MER1_type -2369 51 1 226 191 0 0 chrX 30112479 30112521 -132487409 - MER69 DNA AcHobo -2476 50 9 216 0 0 0 chrX 30112605 30112629 -132487301 + (GA)n Simple_repeat Simple_repeat 2 25 0 306 0 0 0 chrX 30113171 30113205 -132486725 + (TG)n Simple_repeat Simple_repeat 2 35 0 388 63 14 0 chrX 30113604 30113667 -132486263 - Alu SINE Alu -7 295 247 2300 214 42 67 chrX 30113671 30114853 -132485077 - L1MC/D LINE L1 -637 5605 4462 29 0 0 0 chrX 30115333 30115362 -132484568 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 30115850 30115872 -132484058 + AT_rich Low_complexity Low_complexity 1 22 0 782 300 72 62 chrX 30116416 30116903 -132483027 - LTR33 LTR ERVL -2 519 28 1673 199 17 9 chrX 30116911 30117345 -132482585 + L1MEc LINE L1 1691 2185 -4422 1562 124 0 4 chrX 30117501 30117726 -132482204 + AluSq SINE Alu 1 224 -89 1539 188 36 22 chrX 30117757 30118113 -132481817 + L1MA7 LINE L1 5930 6290 -1 2839 225 30 37 chrX 30118143 30118903 -132481027 + L1MD2 LINE L1 5603 6357 -2 296 137 20 0 chrX 30119088 30119139 -132480791 - L1MA3 LINE L1 0 6305 6254 318 123 0 0 chrX 30119241 30119298 -132480632 + (TG)n Simple_repeat Simple_repeat 1 57 0 389 291 115 18 chrX 30119300 30119465 -132480465 + MIR SINE MIR 82 262 0 624 258 48 83 chrX 30120228 30120296 -132479634 - MIR SINE MIR -1 261 192 443 215 58 29 chrX 30120296 30120468 -132479462 + MER104 DNA MER2_type 1 177 -3 624 258 48 83 chrX 30120468 30120651 -132479279 - MIR SINE MIR -70 192 19 2376 58 0 3 chrX 30120789 30121105 -132478825 - AluY SINE Alu 0 318 4 2134 120 7 0 chrX 30121155 30121455 -132478475 - AluSq SINE Alu -9 304 3 448 57 0 29 chrX 30122055 30122125 -132477805 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 2205 125 0 3 chrX 30122125 30122437 -132477493 - AluSq SINE Alu -2 311 1 249 128 0 0 chrX 30123387 30123434 -132476496 + (TG)n Simple_repeat Simple_repeat 2 48 0 227 279 98 0 chrX 30123542 30123603 -132476327 - MIR SINE MIR -112 150 84 2281 83 0 52 chrX 30123867 30124194 -132475736 + AluSx SINE Alu 1 310 -2 5700 150 47 25 chrX 30124513 30124680 -132475250 - L1MA8 LINE L1 -3 6288 6126 1589 162 101 0 chrX 30124680 30125007 -132474923 + MER46B DNA MER2_type 2 236 0 5700 150 47 25 chrX 30125007 30126674 -132473256 - L1MA8 LINE L1 -165 6126 4496 1972 125 0 0 chrX 30126674 30126954 -132472976 - AluSx SINE Alu -32 280 1 5700 150 47 25 chrX 30126954 30127006 -132472924 - L1MA8 LINE L1 -1795 4496 4447 5658 113 0 10 chrX 30127006 30128131 -132471799 - L1PB1 LINE L1 -1 6150 5017 5700 150 47 25 chrX 30128131 30128243 -132471687 - L1MA8 LINE L1 -1844 4447 4243 3387 164 29 14 chrX 30128240 30128861 -132471069 + L1PB4 LINE L1 5448 6077 -79 * 24 53 0 0 chrX 30128881 30128919 -132471011 + AT_rich Low_complexity Low_complexity 1 38 0 1122 144 64 0 chrX 30128926 30129114 -132470816 - L1MA8 LINE L1 -1917 4229 4030 2145 121 0 0 chrX 30131571 30131876 -132468054 - AluSg SINE Alu -5 305 1 186 133 0 0 chrX 30132454 30132484 -132467446 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2257 68 0 0 chrX 30132912 30133233 -132466697 - AluY SINE Alu 0 321 1 2267 110 0 0 chrX 30134033 30134343 -132465587 - AluSq SINE Alu -3 310 1 249 232 0 0 chrX 30134978 30135047 -132464883 + (TA)n Simple_repeat Simple_repeat 2 70 0 2028 123 0 77 chrX 30135052 30135417 -132464513 - MER1B DNA MER1_type 0 337 1 234 208 56 0 chrX 30135426 30135498 -132464432 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 29 78 0 0 chrX 30135646 30135710 -132464220 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chrX 30135734 30135756 -132464174 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrX 30136038 30136064 -132463866 + AT_rich Low_complexity Low_complexity 1 26 0 362 273 121 18 chrX 30136229 30136394 -132463536 + MLT1L LTR MaLR 22 203 -412 201 129 0 0 chrX 30137127 30137158 -132462772 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 21 0 0 0 chrX 30137753 30137774 -132462156 + AT_rich Low_complexity Low_complexity 1 21 0 629 161 18 0 chrX 30137977 30138089 -132461841 + L1MA4 LINE L1 6180 6293 -7 253 305 162 24 chrX 30140450 30140617 -132459313 + MIR3 SINE MIR 15 204 -4 21 36 0 0 chrX 30141415 30141443 -132458487 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chrX 30141524 30141573 -132458357 + AT_rich Low_complexity Low_complexity 1 49 0 1352 184 40 7 chrX 30144044 30144322 -132455608 - L1MC1 LINE L1 0 6333 6047 1224 162 4 58 chrX 30144322 30144563 -132455367 + MER46A DNA MER2_type 4 231 -5 2950 163 25 42 chrX 30144563 30145157 -132454773 - L1MC1 LINE L1 -297 6036 5453 360 0 0 0 chrX 30146520 30146560 -132453370 + (CA)n Simple_repeat Simple_repeat 2 41 0 309 26 0 0 chrX 30146817 30146855 -132453075 + (CCA)n Simple_repeat Simple_repeat 3 40 0 443 257 66 46 chrX 30146988 30147338 -132452592 + L1ME LINE L1 857 1213 -4906 225 286 26 90 chrX 30147350 30147616 -132452314 + L1ME LINE L1 4659 4907 -1222 403 309 143 0 chrX 30147746 30148005 -132451925 + L1ME LINE L1 5273 5568 -579 29 0 0 0 chrX 30148321 30148350 -132451580 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 30148762 30148783 -132451147 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 30149140 30149162 -132450768 + AT_rich Low_complexity Low_complexity 1 22 0 5734 167 51 40 chrX 30151655 30152886 -132447044 + L1PA16 LINE L1 3908 5124 -1042 2071 128 7 0 chrX 30152886 30153182 -132446748 - AluSx SINE Alu -14 298 1 5734 167 51 40 chrX 30153182 30153537 -132446393 + L1PA16 LINE L1 5124 5473 -693 1700 158 53 0 chrX 30153537 30153822 -132446108 + AluSx SINE Alu 1 300 -12 5734 167 51 40 chrX 30153822 30154468 -132445462 + L1PA16 LINE L1 5473 6166 0 26 30 0 0 chrX 30156079 30156112 -132443818 + AT_rich Low_complexity Low_complexity 1 33 0 2378 79 3 13 chrX 30156377 30156692 -132443238 + AluSx SINE Alu 1 312 0 2366 98 0 0 chrX 30156770 30157076 -132442854 - AluSx SINE Alu -6 306 1 303 311 160 0 chrX 30157815 30157921 -132442009 + L2 LINE L2 3148 3270 -2 244 322 50 33 chrX 30158975 30159096 -132440834 - MIR3 SINE MIR -19 189 67 355 280 143 16 chrX 30160159 30160341 -132439589 + MIR SINE MIR 11 215 -47 24 32 0 0 chrX 30161198 30161229 -132438701 + AT_rich Low_complexity Low_complexity 1 31 0 938 241 49 52 chrX 30161680 30162028 -132437902 - L1MD2 LINE L1 -15 6604 6258 1537 186 13 0 chrX 30162032 30162339 -132437591 + L1MB5 LINE L1 5864 6174 0 269 206 59 88 chrX 30162660 30162720 -132437210 - L1MD2 LINE L1 -380 6239 6182 1521 192 26 10 chrX 30162720 30163022 -132436908 + AluJo SINE Alu 3 309 -3 269 206 59 88 chrX 30163022 30163063 -132436867 - L1MD2 LINE L1 -437 6182 6141 3956 128 6 8 chrX 30163065 30163696 -132436234 - L1PA16 LINE L1 -3 6163 5534 1869 258 13 7 chrX 30163702 30164241 -132435689 + L1P LINE L1 2377 2918 -3228 2525 222 78 34 chrX 30164248 30164924 -132435006 - L1MD2 LINE L1 -475 6144 5500 1652 148 0 4 chrX 30164924 30165174 -132434756 - AluSx SINE Alu -61 251 3 2525 222 78 34 chrX 30165174 30165460 -132434470 - L1MD2 LINE L1 -1119 5500 5228 912 99 56 12 chrX 30165460 30165621 -132434309 + L1MA10 LINE L1 6165 6332 -2 2525 222 78 34 chrX 30165621 30166101 -132433829 - L1MD2 LINE L1 -1391 5228 4636 2210 107 0 0 chrX 30166103 30166401 -132433529 - AluSx SINE Alu -14 298 1 2270 282 50 18 chrX 30166407 30167209 -132432721 - L1MD2 LINE L1 -5334 1075 339 2194 287 21 31 chrX 30167217 30167953 -132431977 - L1MDb LINE L1 -5762 647 7 2082 79 57 7 chrX 30168157 30168437 -132431493 + AluSq SINE Alu 9 302 -11 22 80 0 0 chrX 30168564 30168614 -132431316 + AT_rich Low_complexity Low_complexity 1 50 0 2315 60 7 0 chrX 30168629 30168933 -132430997 + AluY SINE Alu 1 306 0 27 0 0 0 chrX 30168994 30169021 -132430909 + AT_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chrX 30170202 30170223 -132429707 + (TG)n Simple_repeat Simple_repeat 2 22 0 833 278 86 24 chrX 30171685 30172023 -132427907 + MLT1J2 LTR MaLR 78 436 -14 844 222 14 27 chrX 30172133 30172354 -132427576 - MER20 DNA MER1_type 0 219 2 224 315 0 56 chrX 30172732 30172875 -132427055 + L2 LINE L2 2460 2594 -720 318 359 46 15 chrX 30173501 30173696 -132426234 + L2 LINE L2 2843 3043 -229 21 36 0 0 chrX 30173985 30174013 -132425917 + AT_rich Low_complexity Low_complexity 1 28 0 444 342 71 67 chrX 30174826 30175501 -132424429 + L2 LINE L2 2270 2947 -367 3892 89 19 0 chrX 30175834 30176376 -132423554 + L1P LINE L1 3674 4225 -1921 24 0 0 0 chrX 30176446 30176470 -132423460 + AT_rich Low_complexity Low_complexity 1 24 0 350 301 86 67 chrX 30176486 30176872 -132423058 - L1ME4a LINE L1 -61 6871 6479 364 341 129 21 chrX 30177715 30178134 -132421796 + L2 LINE L2 2829 3292 -21 1040 288 88 32 chrX 30178138 30178548 -132421382 - MLT1J LTR MaLR 0 511 79 406 276 0 0 chrX 30178698 30178796 -132421134 - L1ME4a LINE L1 -1178 5779 5682 1284 229 20 47 chrX 30178945 30179246 -132420684 - L1ME4a LINE L1 -6557 302 10 1769 220 33 8 chrX 30179945 30180341 -132419589 - MER63B DNA MER1_type -28 408 3 213 281 11 0 chrX 30180355 30180444 -132419486 + (TA)n Simple_repeat Simple_repeat 2 91 0 244 336 69 30 chrX 30180661 30180792 -132419138 - L2 LINE L2 0 3272 3137 3404 170 111 15 chrX 30182225 30182966 -132416964 + L1MA9 LINE L1 5491 6302 -10 238 346 93 0 chrX 30183521 30183628 -132416302 - MLT1I LTR MaLR -78 331 215 * 635 304 43 16 chrX 30183622 30183875 -132416055 - MLT1I LTR MaLR -148 261 2 270 333 50 25 chrX 30184147 30184306 -132415624 + MIR SINE MIR 49 211 -51 22 0 0 0 chrX 30184683 30184705 -132415225 + AT_rich Low_complexity Low_complexity 1 22 0 1217 184 224 3 chrX 30185393 30185692 -132414238 + MLT1A1 LTR MaLR 1 365 0 1145 165 86 131 chrX 30186421 30186803 -132413127 - MLT1A1 LTR MaLR 0 365 1 27 49 0 0 chrX 30186847 30186888 -132413042 + AT_rich Low_complexity Low_complexity 1 41 0 670 276 91 38 chrX 30186939 30187279 -132412651 - L1ME4a LINE L1 -252 5869 5512 28 29 0 0 chrX 30187320 30187355 -132412575 + AT_rich Low_complexity Low_complexity 1 35 0 3796 135 33 9 chrX 30187491 30188159 -132411771 - L1MC1 LINE L1 0 6333 5650 2498 89 27 16 chrX 30188411 30188782 -132411148 + THE1C LTR MaLR 1 375 0 33 73 0 0 chrX 30188900 30188968 -132410962 + AT_rich Low_complexity Low_complexity 1 68 0 7721 22 0 0 chrX 30189052 30190470 -132409460 + L1PA3 LINE L1 4735 6152 -3 282 374 0 38 chrX 30191018 30191149 -132408781 - L3 LINE CR1 -19 1558 1433 497 208 62 99 chrX 30191690 30191882 -132408048 + MIR SINE MIR 2 186 -76 294 265 0 139 chrX 30192030 30192181 -132407749 - L3 LINE CR1 -155 1422 1293 30 45 0 0 chrX 30192207 30192251 -132407679 + AT_rich Low_complexity Low_complexity 1 44 0 2160 84 14 3 chrX 30192302 30192589 -132407341 + AluSx SINE Alu 1 290 -22 255 61 0 0 chrX 30194369 30194402 -132405528 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 24 53 0 0 chrX 30195222 30195260 -132404670 + AT_rich Low_complexity Low_complexity 1 38 0 316 168 34 45 chrX 30195943 30196122 -132403808 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 357 209 0 70 chrX 30196136 30196251 -132403679 + (CATATA)n Simple_repeat Simple_repeat 4 110 0 1260 219 4 4 chrX 30197064 30197302 -132402628 - MER8 DNA MER2_type -1 238 1 3243 219 11 2 chrX 30197469 30198109 -132401821 + MER82 DNA MER2_type 1 646 -7 258 246 0 14 chrX 30198876 30198945 -132400985 + (TG)n Simple_repeat Simple_repeat 1 68 0 204 40 0 0 chrX 30198999 30199024 -132400906 + (CA)n Simple_repeat Simple_repeat 2 26 0 1185 209 60 97 chrX 30199080 30199143 -132400787 - MLT1D LTR MaLR -2 503 439 1930 147 0 13 chrX 30199143 30199450 -132400480 - AluSx SINE Alu -9 303 1 1185 209 60 97 chrX 30199450 30199708 -132400222 - MLT1D LTR MaLR -66 439 202 2318 92 3 3 chrX 30199708 30200011 -132399919 - AluSq SINE Alu -10 303 1 1185 209 60 97 chrX 30200011 30200151 -132399779 - MLT1D LTR MaLR -303 202 58 * 1989 238 33 1 chrX 30200138 30200646 -132399284 + MER77 LTR ERV1 7 598 -7 460 226 0 0 chrX 30200650 30200734 -132399196 - MLT1D LTR MaLR -421 84 1 1249 231 218 14 chrX 30201343 30201897 -132398033 - L1M4 LINE L1 -1122 5024 4358 21 82 0 0 chrX 30201900 30201949 -132397981 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chrX 30202206 30202242 -132397688 + AT_rich Low_complexity Low_complexity 1 36 0 305 197 40 0 chrX 30203014 30203090 -132396840 - MER116 DNA Mariner 0 80 2 23 86 0 0 chrX 30203256 30203314 -132396616 + AT_rich Low_complexity Low_complexity 1 58 0 1531 138 51 47 chrX 30203343 30203639 -132396291 - AluSx SINE Alu -15 297 1 1789 204 9 0 chrX 30203788 30204126 -132395804 + MLT1A1 LTR MaLR 1 341 -24 23 0 0 0 chrX 30204141 30204164 -132395766 + AT_rich Low_complexity Low_complexity 1 23 0 218 264 0 0 chrX 30204502 30204555 -132395375 + (CAT)n Simple_repeat Simple_repeat 2 54 0 14037 128 20 6 chrX 30205237 30207416 -132392514 - Tigger1 DNA MER2_type 0 2418 210 252 278 119 57 chrX 30208558 30208734 -132391196 - MER117 DNA MER1_type -6 191 5 21 36 0 0 chrX 30208952 30208980 -132390950 + AT_rich Low_complexity Low_complexity 1 28 0 726 277 114 7 chrX 30209011 30209282 -132390648 - LTR16C LTR ERVL 0 491 192 330 339 68 41 chrX 30211474 30211769 -132388161 - L2 LINE L2 -463 2851 2549 263 345 26 0 chrX 30212707 30212823 -132387107 + MIR SINE MIR 96 214 -48 2040 109 22 0 chrX 30213078 30213388 -132386542 - AluSg SINE Alu 0 316 1 334 384 24 6 chrX 30213617 30213781 -132386149 + MIR3 SINE MIR 39 205 -3 2075 290 49 10 chrX 30214028 30214820 -132385110 + L1ME3A LINE L1 5348 6170 0 270 167 0 0 chrX 30214935 30214995 -132384935 + (TA)n Simple_repeat Simple_repeat 2 61 0 180 368 15 15 chrX 30215179 30215247 -132384683 - MIR3 SINE MIR -9 199 132 282 217 193 0 chrX 30215918 30216001 -132383929 + L2 LINE L2 3173 3271 -1 883 253 125 16 chrX 30219315 30219620 -132380310 - MER58B DNA MER1_type -2 339 2 204 276 79 13 chrX 30219704 30219780 -132380150 - L3 LINE CR1 -2 1575 1495 779 305 30 121 chrX 30219890 30220846 -132379084 - L3 LINE CR1 -280 1297 429 222 37 0 0 chrX 30221145 30221172 -132378758 + (TG)n Simple_repeat Simple_repeat 1 27 0 324 0 0 0 chrX 30223353 30223389 -132376541 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 279 0 0 0 chrX 30225405 30225436 -132374494 + (TG)n Simple_repeat Simple_repeat 1 31 0 263 386 0 7 chrX 30225775 30225920 -132374010 + L2 LINE L2 2812 2955 -317 10852 191 26 27 chrX 30225962 30227748 -132372182 - L1MA9 LINE L1 -33 7698 5913 2391 82 0 0 chrX 30227748 30228052 -132371878 + AluSx SINE Alu 1 304 -8 10852 191 26 27 chrX 30228052 30228160 -132371770 - L1MA9 LINE L1 -1818 5913 5806 2907 140 35 29 chrX 30228160 30228195 -132371735 + L1MA9 LINE L1 7160 7193 -526 180 0 0 0 chrX 30228195 30228215 -132371715 + (TA)n Simple_repeat Simple_repeat 1 20 0 2907 140 35 29 chrX 30228215 30228728 -132371202 + L1MA4 LINE L1 7193 7713 -6 10852 191 26 27 chrX 30228728 30230355 -132369575 - L1MA9 LINE L1 -1925 5806 4171 6102 159 31 4 chrX 30230374 30232390 -132367540 + L1PB2 LINE L1 4086 6151 0 1745 254 34 30 chrX 30232397 30232809 -132367121 - L1MA9 LINE L1 -3405 4160 3744 2227 111 0 7 chrX 30232809 30233115 -132366815 - AluSx SINE Alu -8 304 1 1745 254 34 30 chrX 30233115 30233352 -132366578 - L1MA9 LINE L1 -3821 3744 3510 905 136 0 8 chrX 30233355 30233487 -132366443 - FLAM_C SINE Alu -12 131 1 1098 262 95 40 chrX 30233489 30234142 -132365788 - L1MA9 LINE L1 -4026 3539 2851 380 268 58 36 chrX 30234437 30234575 -132365355 - MIR SINE MIR -61 201 61 219 413 22 0 chrX 30234616 30234708 -132365222 + L2 LINE L2 3136 3229 -43 193 397 0 0 chrX 30234741 30234814 -132365116 - L2 LINE L2 -27 3245 3173 1314 266 32 5 chrX 30234851 30235260 -132364670 + Charlie4a DNA MER1_type 14 433 -75 637 300 74 4 chrX 30235391 30235634 -132364296 + MIR SINE MIR 3 262 0 1877 231 70 58 chrX 30235677 30236298 -132363632 + L1ME1 LINE L1 5472 6103 -63 204 40 0 0 chrX 30236298 30236323 -132363607 + (TG)n Simple_repeat Simple_repeat 2 26 0 1877 231 70 58 chrX 30236323 30236386 -132363544 + L1ME1 LINE L1 6103 6164 -2 23 33 0 0 chrX 30237000 30237030 -132362900 + AT_rich Low_complexity Low_complexity 1 30 0 515 357 98 32 chrX 30237116 30237688 -132362242 + L2 LINE L2 2641 3253 -60 227 200 0 0 chrX 30237745 30237790 -132362140 + L2 LINE L2 3269 3313 0 308 352 208 0 chrX 30238069 30238194 -132361736 - L2 LINE L2 0 3272 3122 1107 335 88 44 chrX 30238328 30239288 -132360642 - L2 LINE L2 -353 2961 1960 343 292 196 3 chrX 30239293 30239666 -132360264 - L1MEc LINE L1 -3542 2673 2229 254 234 65 19 chrX 30239717 30239824 -132360106 - L1MEc LINE L1 -4436 1960 1849 2055 159 35 43 chrX 30239951 30240501 -132359429 + MLT2A2 LTR ERVL 1 554 0 294 233 27 0 chrX 30240502 30240575 -132359355 - L1MEc LINE L1 -4708 1688 1614 * 1377 192 95 6 chrX 30240559 30240876 -132359054 - L1MD2 LINE L1 -4 6355 6011 1393 264 10 12 chrX 30240889 30241397 -132358533 + L1 LINE L1 3067 3573 -2573 13412 199 15 24 chrX 30241412 30242251 -132357679 + L1PA13 LINE L1 1 846 -5951 252 0 0 0 chrX 30242251 30242279 -132357651 + (TG)n Simple_repeat Simple_repeat 2 29 0 13412 199 15 24 chrX 30242279 30244737 -132355193 + L1PA13 LINE L1 846 3260 -3537 2149 122 3 0 chrX 30244737 30245041 -132354889 + AluSq SINE Alu 1 305 -8 13412 199 15 24 chrX 30245041 30246228 -132353702 + L1PA13 LINE L1 3260 4455 -2342 713 183 0 0 chrX 30246235 30246366 -132353564 - L1P LINE L1 -1804 4342 4212 446 240 41 0 chrX 30246360 30246481 -132353449 - L1M4 LINE L1 -3424 2722 2597 * 1300 186 0 4 chrX 30246482 30246751 -132353179 + L1 LINE L1 4580 4847 -1299 5958 111 9 7 chrX 30246757 30247864 -132352066 + L1PA12 LINE L1 5044 6153 -15 2435 62 0 13 chrX 30248194 30248501 -132351429 - AluY SINE Alu -8 303 1 2755 16 0 0 chrX 30249164 30249474 -132350456 - AluYb8 SINE Alu -8 310 1 641 278 78 36 chrX 30249980 30250066 -132349864 + L1MDa LINE L1 1849 1930 -4610 1896 9 0 0 chrX 30250066 30250283 -132349647 + L1PA2 LINE L1 5935 6151 -4 641 278 78 36 chrX 30250283 30250556 -132349374 + L1MDa LINE L1 1930 2223 -4317 * 3219 166 8 0 chrX 30250541 30251132 -132348798 + L1PA13 LINE L1 4636 5231 -1566 1708 188 11 6 chrX 30251131 30251482 -132348448 - L1P LINE L1 -1430 4716 4364 * 6042 95 21 4 chrX 30251480 30252376 -132347554 - L1PA12 LINE L1 0 6168 5260 249 294 83 78 chrX 30253726 30253906 -132346024 - MIR3 SINE MIR -5 203 23 520 243 36 18 chrX 30254085 30254248 -132345682 + MIR SINE MIR 99 262 0 5919 118 31 0 chrX 30254716 30255739 -132344191 - L1PB1 LINE L1 -3 6864 5816 5110 143 26 6 chrX 30255749 30256598 -132343332 - L1PB1 LINE L1 -4914 1949 1084 5643 148 7 60 chrX 30257303 30258395 -132341535 - L1MC1 LINE L1 -1 6332 5299 979 163 42 0 chrX 30258419 30258609 -132341321 - L1MA4 LINE L1 -15 6285 6088 261 321 151 0 chrX 30259127 30259286 -132340644 - L2 LINE L2 -15 3298 3116 932 9 9 0 chrX 30260014 30260129 -132339801 - L1PA5 LINE L1 -697 5457 5342 5675 48 1 0 chrX 30260129 30260819 -132339111 + L1PA5 LINE L1 5458 6151 -3 31 26 0 0 chrX 30261654 30261692 -132338238 + AT_rich Low_complexity Low_complexity 1 38 0 2850 201 13 18 chrX 30261794 30262303 -132337627 + MLT2B3 LTR ERVL 1 508 -46 603 117 0 0 chrX 30262303 30262397 -132337533 + (TCTG)n Simple_repeat Simple_repeat 3 96 0 2850 201 13 18 chrX 30262397 30262444 -132337486 + MLT2B3 LTR ERVL 508 554 0 28 61 0 0 chrX 30263235 30263284 -132336646 + AT_rich Low_complexity Low_complexity 1 49 0 308 299 36 44 chrX 30263596 30263733 -132336197 + MER5A DNA MER1_type 24 159 -30 * 394 329 32 19 chrX 30263611 30263769 -132336161 - MER5A DNA MER1_type -26 163 4 875 251 5 14 chrX 30263953 30264172 -132335758 + MER20 DNA MER1_type 3 219 0 2167 114 0 0 chrX 30264208 30264497 -132335433 - AluSx SINE Alu -23 289 1 297 175 0 75 chrX 30266104 30266184 -132333746 + MIR SINE MIR 123 196 -66 274 281 107 16 chrX 30266901 30267022 -132332908 + MIR SINE MIR 58 189 -73 185 222 28 0 chrX 30267115 30267151 -132332779 + MIR SINE MIR 219 255 -7 256 361 0 0 chrX 30267194 30267255 -132332675 + L3 LINE CR1 581 641 -936 1760 183 0 10 chrX 30268748 30269060 -132330870 - AluJo SINE Alu -1 311 3 200 86 29 0 chrX 30269419 30269454 -132330476 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 220 327 0 0 chrX 30269472 30269527 -132330403 + (CATG)n Simple_repeat Simple_repeat 4 58 0 186 48 24 48 chrX 30269547 30269589 -132330341 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 243 299 28 37 chrX 30270599 30270706 -132329224 - 7SK RNA RNA -85 108 3 864 329 165 29 chrX 30274270 30274927 -132325003 - L2 LINE L2 0 3313 2555 867 220 22 0 chrX 30274940 30275122 -132324808 + MER5A DNA MER1_type 4 189 0 225 345 48 90 chrX 30277076 30277221 -132322709 - MIR SINE MIR -122 140 2 9612 167 23 32 chrX 30277668 30277946 -132321984 + L1PA15 LINE L1 3317 3596 -2569 2103 81 53 0 chrX 30277946 30278229 -132321701 - AluY SINE Alu -13 298 1 9612 167 23 32 chrX 30278229 30280802 -132319128 + L1PA15 LINE L1 3596 6140 -25 225 0 0 0 chrX 30280802 30280827 -132319103 + (TA)n Simple_repeat Simple_repeat 1 25 0 5162 64 8 0 chrX 30280832 30281502 -132318428 - L1PA7 LINE L1 -3 6151 5477 21 0 0 0 chrX 30282945 30282966 -132316964 + AT_rich Low_complexity Low_complexity 1 21 0 236 264 44 11 chrX 30283045 30283136 -132316794 + MLT1J2 LTR MaLR 68 161 -289 477 283 86 30 chrX 30283343 30283576 -132316354 + L2 LINE L2 3047 3292 -21 254 246 0 18 chrX 30283937 30284047 -132315883 + (TATG)n Simple_repeat Simple_repeat 1 108 0 223 159 14 72 chrX 30286062 30286131 -132313799 + GA-rich Low_complexity Low_complexity 2 66 0 367 317 87 12 chrX 30286818 30286979 -132312951 - MIR SINE MIR -4 258 86 402 333 55 6 chrX 30287010 30287175 -132312755 - MIR SINE MIR -4 258 86 233 245 21 11 chrX 30287509 30287603 -132312327 - L1MC4 LINE L1 -1334 6708 6614 226 326 0 0 chrX 30287780 30287869 -132312061 - L1MC4 LINE L1 -1340 6702 6614 * 261 204 0 82 chrX 30287801 30287899 -132312031 + L1MC4 LINE L1 6614 6703 -1339 * 268 192 0 0 chrX 30287871 30287923 -132312007 - L1MC4 LINE L1 -1339 6703 6652 351 206 53 15 chrX 30288879 30289010 -132310920 + (TA)n Simple_repeat Simple_repeat 2 137 0 5247 128 47 11 chrX 30289276 30290206 -132309724 - L1PA13 LINE L1 0 6163 5199 8710 162 17 161 chrX 30290207 30291223 -132308707 - L1PA13 LINE L1 -1837 4309 3148 3093 35 0 68 chrX 30291223 30291648 -132308282 + L1PA5 LINE L1 5751 6149 -5 8710 162 17 161 chrX 30291648 30293442 -132306488 - L1PA13 LINE L1 -2998 3148 1904 405 326 79 11 chrX 30295029 30295219 -132304711 + LTR16A LTR ERVL 88 290 -160 2162 51 0 0 chrX 30297393 30297669 -132302261 - AluY SINE Alu 0 311 30 2475 194 16 27 chrX 30298980 30299879 -132300051 + L1M3 LINE L1 4891 5782 -401 354 210 0 0 chrX 30299898 30299966 -132299964 - Tigger2 DNA MER2_type -10 2708 2650 788 362 57 26 chrX 30299977 30300632 -132299298 + L1M2 LINE L1 1 1952 -5257 384 370 45 8 chrX 30300714 30300957 -132298973 + L1PBb LINE L1 106 357 -5847 1147 301 50 19 chrX 30301079 30301546 -132298384 + L1PBb LINE L1 353 917 -5286 * 12434 215 31 19 chrX 30301527 30306906 -132293024 + L1PB4 LINE L1 686 6207 -6 736 139 70 0 chrX 30306912 30307041 -132292889 - Tigger2 DNA MER2_type -52 2666 2529 198 0 0 0 chrX 30307041 30307063 -132292867 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7161 29 1 0 chrX 30307063 30307903 -132292027 - L1PA3 LINE L1 -18 6137 5297 333 73 118 0 chrX 30307903 30307971 -132291959 - Tigger2 DNA MER2_type -181 2537 2462 3960 156 39 10 chrX 30308031 30308757 -132291173 - Tigger2 DNA MER2_type -1970 748 2 203 182 36 18 chrX 30308757 30308812 -132291118 + (TA)n Simple_repeat Simple_repeat 2 57 0 2250 149 3 3 chrX 30308818 30309207 -132290723 + L1MB3 LINE L1 5787 6175 -8 402 57 0 0 chrX 30309389 30309442 -132290488 + (CA)n Simple_repeat Simple_repeat 2 54 0 25 0 0 0 chrX 30309571 30309596 -132290334 + AT_rich Low_complexity Low_complexity 1 25 0 6088 94 5 3 chrX 30309664 30311449 -132288481 - L1PA13 LINE L1 0 6163 4388 304 307 132 38 chrX 30312844 30313131 -132286799 + MLT1J LTR MaLR 13 326 -185 1014 296 113 27 chrX 30313292 30313411 -132286519 + L1MC4a LINE L1 5260 5367 -2441 2479 65 0 0 chrX 30313411 30313705 -132286225 + AluY SINE Alu 1 294 -17 213 39 0 0 chrX 30313705 30313731 -132286199 + (TA)n Simple_repeat Simple_repeat 2 27 0 1014 296 113 27 chrX 30313731 30314090 -132285840 + L1MC4a LINE L1 5367 5808 -2000 2268 162 50 21 chrX 30314090 30314510 -132285420 + MSTB1 LTR MaLR 1 432 0 1014 296 113 27 chrX 30314510 30314658 -132285272 + L1MC4a LINE L1 5808 5942 -1866 2161 117 47 33 chrX 30315379 30315738 -132284192 - THE1B LTR MaLR 0 364 1 192 77 0 0 chrX 30315793 30315819 -132284111 + (TG)n Simple_repeat Simple_repeat 1 26 0 492 203 136 8 chrX 30315975 30316093 -132283837 + MER5A DNA MER1_type 55 187 -2 285 108 31 15 chrX 30316258 30316323 -132283607 + (TA)n Simple_repeat Simple_repeat 1 66 0 204 97 0 0 chrX 30316646 30316677 -132283253 + (CA)n Simple_repeat Simple_repeat 1 31 0 306 245 158 36 chrX 30317068 30317207 -132282723 - MIR3 SINE MIR -21 187 32 194 299 103 54 chrX 30317320 30317524 -132282406 + L2 LINE L2 2891 3104 -168 2494 60 0 19 chrX 30317579 30317896 -132282034 + AluY SINE Alu 1 311 0 252 0 0 0 chrX 30317899 30317927 -132282003 + (TA)n Simple_repeat Simple_repeat 2 29 0 559 284 0 14 chrX 30318935 30319083 -132280847 + L1M3d LINE L1 423 568 -5735 421 330 28 64 chrX 30319087 30319317 -132280613 + L1M3d LINE L1 597 1086 -5217 325 377 14 27 chrX 30319385 30319531 -132280399 + L1M3d LINE L1 936 1079 -5224 10600 219 42 45 chrX 30319687 30323081 -132276849 + L1MB1 LINE L1 796 4200 -2204 2067 112 7 14 chrX 30323081 30323376 -132276554 + AluSg SINE Alu 1 293 -17 10600 219 42 45 chrX 30323376 30323858 -132276072 + L1MB1 LINE L1 4200 4682 -1722 2278 108 3 0 chrX 30323858 30324164 -132275766 - AluSq SINE Alu -6 307 1 10600 219 42 45 chrX 30324164 30326008 -132273922 + L1MB1 LINE L1 4682 6404 0 22 0 0 0 chrX 30326407 30326429 -132273501 + AT_rich Low_complexity Low_complexity 1 22 0 6683 33 4 0 chrX 30326604 30327417 -132272513 - L1PA4 LINE L1 -1492 4654 3839 7516 30 0 0 chrX 30327417 30328904 -132271026 + L1PA4 LINE L1 4663 6148 -7 1765 216 70 44 chrX 30329737 30330733 -132269197 - MER69 DNA AcHobo 0 2526 1460 413 347 47 0 chrX 30330735 30330928 -132269002 - MER69 DNA AcHobo -2248 278 77 1112 218 29 71 chrX 30331249 30331630 -132268300 + MLT1A1 LTR MaLR 1 365 0 216 175 0 0 chrX 30332811 30332851 -132267079 + (TG)n Simple_repeat Simple_repeat 1 40 0 4893 184 39 63 chrX 30332919 30336357 -132263573 + L1PA14 LINE L1 1 3517 -4082 4893 113 4 1 chrX 30336357 30337072 -132262858 + L1PA14 LINE L1 6866 7599 0 4893 184 39 63 chrX 30337072 30340338 -132259592 + L1PA14 LINE L1 3517 7599 0 9228 196 36 11 chrX 30340339 30342105 -132257825 + L1M1 LINE L1 19 1829 -5736 2642 208 86 57 chrX 30342089 30343122 -132256808 - MSTB-int LTR MaLR -515 1065 1 * 2090 184 39 5 chrX 30343122 30343534 -132256396 - MSTB LTR MaLR 0 426 1 3468 164 11 0 chrX 30343534 30344142 -132255788 + L1PA16 LINE L1 5549 6163 -3 2260 149 26 0 chrX 30344239 30344621 -132255309 + L1PA16 LINE L1 5770 6161 -5 880 246 27 0 chrX 30344625 30344845 -132255085 + L1PA16 LINE L1 5936 6161 -5 489 326 76 42 chrX 30345141 30345524 -132254406 + L1M4 LINE L1 4006 4401 -1745 241 181 85 21 chrX 30345615 30345709 -132254221 + L1MD3 LINE L1 7896 7995 0 3256 197 53 1 chrX 30345915 30346727 -132253203 - L1 LINE L1 -2414 5151 4298 * 9699 141 27 14 chrX 30346719 30347721 -132252209 - L1 LINE L1 -4313 3252 2217 2112 129 0 10 chrX 30347721 30348024 -132251906 - AluSx SINE Alu -12 300 1 9699 141 27 14 chrX 30348024 30348727 -132251203 - L1 LINE L1 -5348 2217 1525 1106 129 68 57 chrX 30549206 30549486 -132050444 - Charlie1 DNA MER1_type -2 2759 2477 509 202 61 9 chrX 30549493 30549607 -132050323 - Charlie1 DNA MER1_type -2641 120 1 347 254 63 72 chrX 30550177 30550354 -132049576 - MIR SINE MIR -62 146 19 23 68 0 0 chrX 30550875 30550919 -132049011 + AT_rich Low_complexity Low_complexity 1 44 0 250 269 15 0 chrX 30551550 30551617 -132048313 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 588 258 79 0 chrX 30553281 30553459 -132046471 + MIR SINE MIR 70 261 -1 22 0 0 0 chrX 30553459 30553481 -132046449 + AT_rich Low_complexity Low_complexity 1 22 0 205 226 0 38 chrX 30553937 30553990 -132045940 + MIR3 SINE MIR 155 205 -3 2162 85 7 3 chrX 30554371 30554695 -132045235 + AluSp SINE Alu 1 325 0 192 214 143 0 chrX 30556314 30556370 -132043560 + MIR SINE MIR 76 139 -69 587 219 0 17 chrX 30556441 30556560 -132043370 + FLAM_A SINE Alu 5 121 -12 1629 138 56 175 chrX 30556874 30557302 -132042628 + MER51A LTR ERV1 1 634 0 1891 171 48 45 chrX 30558328 30558749 -132041181 + MSTB2 LTR MaLR 36 457 0 237 286 0 26 chrX 30559089 30559166 -132040764 - MLT1L LTR MaLR -540 75 1 935 251 5 5 chrX 30559379 30559586 -132040344 - MER58A DNA MER1_type -2 222 16 205 316 63 0 chrX 30559819 30559898 -132040032 - MER5B DNA MER1_type -91 87 4 266 200 33 0 chrX 30559909 30559969 -132039961 - MER5A DNA MER1_type 0 189 128 910 236 52 0 chrX 30560454 30560645 -132039285 - MIR SINE MIR -22 240 40 679 321 123 19 chrX 30561473 30562009 -132037921 + L2 LINE L2 2098 2689 -625 311 113 19 0 chrX 30562438 30562491 -132037439 + (CACCC)n Simple_repeat Simple_repeat 5 58 0 313 276 128 64 chrX 30563408 30563611 -132036319 - L1M2 LINE L1 -5962 887 672 1617 160 28 53 chrX 30563859 30564178 -132035752 + AluJb SINE Alu 1 311 -1 23 0 0 0 chrX 30564238 30564261 -132035669 + AT_rich Low_complexity Low_complexity 1 23 0 2118 124 0 10 chrX 30564829 30565135 -132034795 + AluSq SINE Alu 1 303 -10 1953 239 38 27 chrX 30565525 30566081 -132033849 + MER68 LTR ERV1 1 562 0 1150 238 58 69 chrX 30567687 30568221 -132031709 - L1ME LINE L1 -5198 872 345 22 35 0 0 chrX 30568545 30568574 -132031356 + AT_rich Low_complexity Low_complexity 1 29 0 748 222 167 52 chrX 30568842 30569166 -132030764 - MLT1J2 LTR MaLR -89 361 1 22 0 0 0 chrX 30570139 30570161 -132029769 + AT_rich Low_complexity Low_complexity 1 22 0 1002 247 4 21 chrX 30571346 30571585 -132028345 + MLT1D LTR MaLR 13 247 -258 359 162 0 0 chrX 30571725 30571793 -132028137 + MLT1E2 LTR MaLR 551 618 -8 207 204 0 0 chrX 30571863 30571907 -132028023 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 306 0 0 0 chrX 30571920 30571954 -132027976 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 554 274 123 11 chrX 30572635 30572814 -132027116 + MIR SINE MIR 15 213 -49 22 0 0 0 chrX 30572814 30572836 -132027094 + AT_rich Low_complexity Low_complexity 1 22 0 289 316 12 10 chrX 30574114 30574216 -132025714 + MIR3 SINE MIR 11 113 -135 384 310 7 14 chrX 30574263 30574405 -132025525 + MIR SINE MIR 88 228 -34 574 315 35 11 chrX 30575044 30575304 -132024626 - LTR16B LTR ERVL -75 389 124 21 0 0 0 chrX 30575605 30575626 -132024304 + AT_rich Low_complexity Low_complexity 1 21 0 255 285 102 0 chrX 30576485 30576622 -132023308 - L1MC4 LINE L1 -1 8041 7891 411 179 30 0 chrX 30576721 30576788 -132023142 - MER2 DNA MER2_type 0 345 277 * 512 247 133 19 chrX 30576760 30576918 -132023012 - MER8 DNA MER2_type -60 179 4 430 293 48 52 chrX 30576981 30577210 -132022720 - AluJb SINE Alu -27 275 48 305 133 0 0 chrX 30577310 30577355 -132022575 - AluS SINE Alu -211 92 48 312 27 0 0 chrX 30577359 30577396 -132022534 + (TG)n Simple_repeat Simple_repeat 2 38 0 2657 250 59 32 chrX 30577403 30579180 -132020750 - L1ME2 LINE L1 -10 6154 4331 437 215 70 25 chrX 30579194 30579352 -132020578 - L1ME2 LINE L1 -3276 2870 2706 218 357 161 20 chrX 30580079 30580631 -132019299 - L2 LINE L2 -464 2850 2221 182 303 37 64 chrX 30580645 30580754 -132019176 + L3 LINE CR1 1456 1561 -16 363 199 0 8 chrX 30581333 30581406 -132018524 + MER5B DNA MER1_type 73 153 -36 1848 192 93 50 chrX 30581454 30581938 -132017992 + MLT1D LTR MaLR 1 505 0 207 0 0 0 chrX 30583477 30583500 -132016430 + (T)n Simple_repeat Simple_repeat 1 23 0 228 254 9 55 chrX 30584013 30584123 -132015807 + C-rich Low_complexity Low_complexity 1 105 0 2584 198 60 46 chrX 30584993 30586146 -132013784 + L1MD2 LINE L1 5589 6231 -11 2707 183 13 48 chrX 30586146 30586203 -132013727 + L1MA10 LINE L1 5734 5791 -543 2493 77 44 0 chrX 30586203 30586543 -132013387 + THE1A LTR MaLR 1 355 0 11682 95 4 5 chrX 30586544 30588124 -132011806 + THE1A-int LTR MaLR 2 1580 0 2732 65 14 3 chrX 30588124 30588475 -132011455 + THE1A LTR MaLR 1 355 0 2707 183 13 48 chrX 30588475 30589022 -132010908 + L1MA10 LINE L1 5789 6320 -14 23 54 0 0 chrX 30589429 30589466 -132010464 + AT_rich Low_complexity Low_complexity 1 37 0 46 33 0 0 chrX 30591160 30591220 -132008710 + AT_rich Low_complexity Low_complexity 1 60 0 858 189 24 0 chrX 30591859 30592028 -132007902 - MER5A DNA MER1_type -15 174 2 2616 128 39 36 chrX 30592152 30592620 -132007310 - Tigger3b DNA MER2_type 0 1231 763 931 114 0 0 chrX 30592634 30592757 -132007173 + FLAM_C SINE Alu 1 123 -20 183 62 104 0 chrX 30592760 30592808 -132007122 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 3430 99 92 128 chrX 30592815 30593615 -132006315 - Tigger3b DNA MER2_type -455 776 5 686 305 168 19 chrX 30593704 30594019 -132005911 - L3 LINE CR1 -235 1342 981 246 198 70 70 chrX 30594417 30594503 -132005427 + MER117 DNA MER1_type 95 180 -17 343 48 0 0 chrX 30594575 30594617 -132005313 - MER4E LTR ERV1 -72 694 653 25 0 0 0 chrX 30595177 30595202 -132004728 + AT_rich Low_complexity Low_complexity 1 25 0 1560 154 3 96 chrX 30595400 30595752 -132004178 - AluJb SINE Alu 0 323 1 379 381 30 5 chrX 30598099 30598296 -132001634 + MIR3 SINE MIR 6 207 -1 24 32 0 0 chrX 30599035 30599066 -132000864 + AT_rich Low_complexity Low_complexity 1 31 0 2080 132 3 0 chrX 30600873 30601176 -131998754 - AluSx SINE Alu -8 304 1 202 265 0 20 chrX 30601545 30601594 -131998336 - L3 LINE CR1 -4 1573 1526 397 259 48 78 chrX 30601793 30601959 -131997971 - MIR3 SINE MIR -36 172 12 2264 151 145 29 chrX 30601964 30602196 -131997734 + L1MC1 LINE L1 5170 5374 -959 2032 128 8 68 chrX 30602196 30602563 -131997367 - MER7A DNA MER2_type -2 344 2 2264 151 145 29 chrX 30602563 30603229 -131996701 + L1MC1 LINE L1 5374 6229 -104 344 186 105 23 chrX 30603221 30603307 -131996623 + L1MB5 LINE L1 5998 6090 -84 * 416 177 0 0 chrX 30603364 30603443 -131996487 + L1MB5 LINE L1 6096 6174 0 1200 174 148 23 chrX 30604958 30605263 -131994667 + MER2 DNA MER2_type 1 343 -1 360 275 54 27 chrX 30605641 30605813 -131994117 + MIR SINE MIR 4 175 -62 2401 174 24 5 chrX 30606645 30607070 -131992860 + Tigger2a DNA MER2_type 1 433 -1 3878 108 78 5 chrX 30607314 30607914 -131992016 + LTR9B LTR ERV1 1 644 0 353 281 141 36 chrX 30608393 30608585 -131991345 - MIR SINE MIR -47 215 4 2623 139 116 22 chrX 30608641 30609181 -131990749 + LTR24B LTR ERV1 1 635 0 22 0 0 0 chrX 30609344 30609366 -131990564 + AT_rich Low_complexity Low_complexity 1 22 0 380 198 62 0 chrX 30610959 30611040 -131988890 + MER103 DNA DNA 22 107 -59 286 283 0 0 chrX 30611129 30611189 -131988741 + L3 LINE CR1 1516 1575 -2 254 273 36 0 chrX 30611249 30611304 -131988626 - L3 LINE CR1 -7 1570 1514 24 53 0 0 chrX 30611902 30611940 -131987990 + AT_rich Low_complexity Low_complexity 1 38 0 388 48 32 16 chrX 30612380 30612443 -131987487 + (TTTTA)n Simple_repeat Simple_repeat 1 64 0 39124 37 2 13 chrX 30612443 30618085 -131981845 - L1PA3 LINE L1 -24 6131 555 375 23 0 0 chrX 30618104 30618148 -131981782 + (TG)n Simple_repeat Simple_repeat 2 45 0 187 314 15 117 chrX 30619056 30619123 -131980807 - L2 LINE L2 -1 3271 3223 1421 127 28 0 chrX 30619123 30619335 -131980595 + MER20 DNA MER1_type 2 219 0 187 314 15 117 chrX 30619335 30619404 -131980526 - L2 LINE L2 -49 3223 3149 2316 91 60 28 chrX 30619433 30619786 -131980144 - THE1B LTR MaLR 0 364 1 269 49 0 0 chrX 30620454 30620495 -131979435 - L1MA9 LINE L1 -37 6275 6235 2075 114 0 7 chrX 30620496 30620793 -131979137 - AluSg SINE Alu -15 295 1 582 265 40 30 chrX 30620884 30621084 -131978846 + MIR SINE MIR 19 220 -42 235 321 57 57 chrX 30621974 30622114 -131977816 - MIR SINE MIR -66 196 57 305 181 69 28 chrX 30622155 30622227 -131977703 - L1ME3A LINE L1 -58 6112 6038 473 323 8 0 chrX 30622285 30622412 -131977518 - L2 LINE L2 -6 3266 3139 277 350 119 7 chrX 30622454 30622597 -131977333 - L2 LINE L2 -410 2904 2746 704 212 21 106 chrX 30623068 30623331 -131976599 - L1ME3A LINE L1 -189 5981 5742 1887 197 19 8 chrX 30623331 30623692 -131976238 + MLT1A1 LTR MaLR 1 365 0 704 212 21 106 chrX 30623692 30623711 -131976219 - L1ME3A LINE L1 -428 5742 5723 2757 136 9 9 chrX 30623883 30624309 -131975621 + MSTA LTR MaLR 1 426 -2 9031 171 28 6 chrX 30624311 30625927 -131974003 + MSTA-int LTR MaLR 1 1651 0 2571 103 75 0 chrX 30625927 30626325 -131973605 + MSTA LTR MaLR 1 428 0 679 244 30 36 chrX 30626820 30626988 -131972942 - MIR SINE MIR -62 200 34 486 235 14 52 chrX 30627166 30627354 -131972576 + L1MA10 LINE L1 5988 6333 -1 1377 180 34 8 chrX 30627556 30627597 -131972333 + MLT1F LTR MaLR 269 307 -235 2135 116 0 7 chrX 30627597 30627899 -131972031 + AluSx SINE Alu 1 300 -12 1377 180 34 8 chrX 30627899 30628124 -131971806 + MLT1F LTR MaLR 307 542 0 188 67 33 0 chrX 30628151 30628181 -131971749 + (TA)n Simple_repeat Simple_repeat 2 32 0 2932 184 73 81 chrX 30628183 30629015 -131970915 - L1ME3A LINE L1 -25 6145 5320 23 0 0 0 chrX 30629982 30630005 -131969925 + AT_rich Low_complexity Low_complexity 1 23 0 228 130 259 0 chrX 30631108 30631162 -131968768 - L1ME LINE L1 -294 5827 5760 261 188 0 58 chrX 30631181 30631250 -131968680 + L1ME LINE L1 5769 5833 -288 235 234 11 85 chrX 30633167 30633261 -131966669 - MIR SINE MIR -71 191 105 259 354 79 24 chrX 30633792 30633919 -131966011 + L2 LINE L2 3121 3254 -18 301 232 87 43 chrX 30634153 30634338 -131965592 - L1ME LINE L1 -289 5832 5640 252 59 0 0 chrX 30634671 30634705 -131965225 + (A)n Simple_repeat Simple_repeat 1 34 0 297 306 99 0 chrX 30634729 30634840 -131965090 - L2 LINE L2 -3 3269 3148 235 267 0 17 chrX 30636721 30636781 -131963149 - L2 LINE L2 0 3272 3214 189 0 0 0 chrX 30637157 30637178 -131962752 + (TA)n Simple_repeat Simple_repeat 1 21 0 1204 256 37 16 chrX 30637180 30637555 -131962375 + L1ME LINE L1 878 1260 -5294 1954 187 117 17 chrX 30637588 30638048 -131961882 + L1ME LINE L1 158 663 -5901 1200 217 68 10 chrX 30638050 30638345 -131961585 + MER2 DNA MER2_type 29 340 -5 2361 186 43 24 chrX 30638346 30638935 -131960995 + L1ME LINE L1 474 1051 -4994 973 283 89 20 chrX 30638941 30639479 -131960451 + L1ME LINE L1 1270 1844 -4720 8707 155 27 33 chrX 30639484 30641116 -131958814 + L1MA8 LINE L1 3676 5319 -972 2091 120 0 33 chrX 30641116 30641417 -131958513 + AluSx SINE Alu 1 291 -21 8707 155 27 33 chrX 30641417 30641730 -131958200 + L1MA8 LINE L1 5319 5632 -659 6562 173 69 62 chrX 30641730 30643364 -131956566 - MER52A LTR ERV1 0 1755 1 2618 214 21 74 chrX 30643364 30643742 -131956188 + L1MA8 LINE L1 5629 5965 -326 2673 100 3 16 chrX 30643742 30644111 -131955819 - THE1B LTR MaLR 0 364 1 2618 214 21 74 chrX 30644111 30644340 -131955590 + L1MA8 LINE L1 5965 6204 -87 23 0 0 0 chrX 30644378 30644401 -131955529 + AT_rich Low_complexity Low_complexity 1 23 0 1777 287 61 26 chrX 30644401 30645750 -131954180 + L1ME LINE L1 1882 3235 -3329 507 314 138 45 chrX 30645759 30646135 -131953795 - MER68 LTR ERV1 -7 555 145 512 209 64 21 chrX 30646346 30646533 -131953397 + L1ME LINE L1 3257 3451 -3113 266 222 118 69 chrX 30647143 30647287 -131952643 - LTR40b LTR ERVL -42 420 270 * 678 329 91 35 chrX 30647171 30647655 -131952275 - REP3 LTR ERV -44 518 8 2099 68 68 4 chrX 30648266 30648546 -131951384 + LTR3 LTR ERVK 1 298 -134 1163 155 8 0 chrX 30648647 30652564 -131947366 + ALR/Alpha Satellite centromeric 1 3946 -28 9680 195 69 38 chrX 30652843 30655771 -131944159 + L1MC1 LINE L1 2581 5607 -726 539 208 10 0 chrX 30655772 30655868 -131944062 - Tigger7 DNA MER2_type -1 2586 2490 * 1533 187 23 8 chrX 30655867 30656129 -131943801 - Tigger7 DNA MER2_type -2220 267 2 3944 163 31 19 chrX 30656137 30656841 -131943089 + L1MC1 LINE L1 5621 6333 0 290 304 16 24 chrX 30656901 30657026 -131942904 + L2 LINE L2 2278 2401 -913 779 274 63 116 chrX 30657039 30657372 -131942558 + L2 LINE L2 2817 3113 -200 198 71 0 0 chrX 30657372 30657400 -131942530 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 779 274 63 116 chrX 30657400 30657591 -131942339 + L2 LINE L2 3113 3313 0 222 286 41 68 chrX 30658197 30658344 -131941586 + MER5A DNA MER1_type 46 188 -1 1859 161 7 23 chrX 30658354 30658664 -131941266 + AluJb SINE Alu 3 307 -5 2608 48 0 19 chrX 30658878 30659193 -131940737 + AluSg SINE Alu 1 309 -1 640 231 131 0 chrX 30659320 30659480 -131940450 + MER5A DNA MER1_type 9 189 0 5957 115 61 15 chrX 30659683 30660780 -131939150 - Tigger3b DNA MER2_type 0 1231 2 243 224 35 0 chrX 30660797 30660855 -131939075 - MIR SINE MIR -94 168 109 1784 119 4 15 chrX 30661580 30661841 -131938089 - AluSx SINE Alu -15 297 40 2483 189 159 105 chrX 30663762 30664315 -131935615 - L1MC3 LINE L1 -1 7784 7263 402 213 43 21 chrX 30664315 30664409 -131935521 - MLT1F1 LTR MaLR -436 131 36 2483 189 159 105 chrX 30664409 30664785 -131935145 - L1MC3 LINE L1 -522 7263 6706 352 310 148 20 chrX 30665071 30665274 -131934656 - MIR SINE MIR -3 259 31 429 100 0 0 chrX 30665297 30665357 -131934573 - L1MA9 LINE L1 -6 6306 6247 211 317 233 8 chrX 30665369 30665489 -131934441 + L2 LINE L2 3163 3309 -4 1371 246 162 58 chrX 30666080 30667138 -131932792 - L2 LINE L2 -1 3312 2136 292 222 16 0 chrX 30668729 30668792 -131931138 - L2 LINE L2 -2 3311 3248 261 330 76 8 chrX 30669043 30669161 -131930769 + MIR SINE MIR 47 172 -90 2328 72 10 0 chrX 30670911 30671204 -131928726 - AluY SINE Alu -15 296 1 184 305 0 95 chrX 30671427 30671522 -131928408 - L2 LINE L2 -50 3222 3137 1600 165 26 36 chrX 30671835 30672144 -131927786 - AluJb SINE Alu -6 306 1 501 17 0 0 chrX 30672201 30672259 -131927671 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 197 99 14 chrX 30672437 30672508 -131927422 - L1ME3 LINE L1 -80 6082 6006 281 24 49 0 chrX 30672593 30672634 -131927296 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2463 57 0 0 chrX 30672636 30672918 -131927012 - AluY SINE Alu -29 282 1 11889 127 5 40 chrX 30672919 30675349 -131924581 - HERVH LTR ERV1 -5052 2661 1 2151 86 36 9 chrX 30675349 30675738 -131924192 - LTR7 LTR ERV1 0 450 1 18689 144 48 15 chrX 30676469 30679543 -131920387 - ERVL LTR ERVL 0 5764 2587 753 138 8 8 chrX 30679543 30679666 -131920264 + LTR56 LTR ERV1 9 131 -314 264 216 60 100 chrX 30679997 30680170 -131919760 + LTR26E LTR ERV1 365 525 0 344 272 18 66 chrX 30680624 30680872 -131919058 + LTR56-int LTR ERV1 539 1393 -6363 1032 346 41 16 chrX 30681085 30681640 -131918290 + LTR56-int LTR ERV1 958 1526 -5596 330 93 19 56 chrX 30682534 30682588 -131917342 + tRNA-Met-e tRNA tRNA 1 52 -23 1918 353 39 45 chrX 30682646 30684440 -131915490 + LTR56-int LTR ERV1 2472 4255 -2867 723 124 8 10 chrX 30684697 30684949 -131914981 + AluSx SINE Alu 6 301 -9 489 292 86 39 chrX 30685217 30685577 -131914353 + LTR56-int LTR ERV1 5453 5829 -1927 2142 328 52 48 chrX 30685597 30687215 -131912715 + LTR56-int LTR ERV1 5246 6869 -253 1318 96 45 0 chrX 30687940 30688139 -131911791 + LTR56 LTR ERV1 128 335 -110 3626 101 17 20 chrX 30688139 30688820 -131911110 + L1M1 LINE L1 5111 5787 -517 1557 247 49 70 chrX 30688820 30689432 -131910498 + LTR9 LTR ERV1 1 599 -13 3202 94 18 0 chrX 30689432 30689869 -131910061 + L1MA1 LINE L1 5858 6302 0 7588 161 8 16 chrX 30690022 30691267 -131908663 - ERVL LTR ERVL -3166 2598 1364 1630 171 153 70 chrX 30691267 30691797 -131908133 + LTR49 LTR ERV1 1 600 -22 3330 194 58 33 chrX 30691818 30692490 -131907440 - ERVL LTR ERVL -4397 1367 679 258 152 22 0 chrX 30692492 30692538 -131907392 - ERVL LTR ERVL -5064 700 654 839 69 0 0 chrX 30692540 30692642 -131907288 + AluSc SINE Alu 196 297 -12 1800 163 116 34 chrX 30692831 30693292 -131906638 + LTR10A LTR ERV1 1 546 -63 911 209 61 36 chrX 30693302 30693580 -131906350 + LTR10A-int LTR ERV1 1 285 -6364 3904 200 24 21 chrX 30693653 30694550 -131905380 + LTR10A-int LTR ERV1 546 2587 -4888 12269 133 34 38 chrX 30694568 30698792 -131901138 + HERV17 LTR ERV1 694 7784 -1 2137 174 104 45 chrX 30698797 30699314 -131900616 + LTR10A LTR ERV1 1 548 -61 381 259 101 32 chrX 30699600 30699789 -131900141 + L1MC5 LINE L1 7673 7874 -87 1742 156 4 0 chrX 30700074 30700343 -131899587 + L1M1 LINE L1 1638 1907 -5658 4426 121 26 3 chrX 30700353 30701016 -131898914 + L1MA2 LINE L1 5627 6304 0 192 267 0 0 chrX 30701057 30701102 -131898828 - L3b LINE CR1 -140 1443 1399 809 144 65 26 chrX 30701371 30701524 -131898406 - THE1C LTR MaLR -216 159 1 6645 154 13 14 chrX 30701528 30702630 -131897300 - THE1C-int LTR MaLR -4 1576 477 822 114 0 0 chrX 30702622 30702736 -131897194 - THE1C-int LTR MaLR -1363 217 104 * 230 256 51 77 chrX 30703156 30703286 -131896644 + MIR SINE MIR 53 185 -64 2066 109 44 3 chrX 30703378 30703671 -131896259 - AluSq SINE Alu -8 305 1 184 305 0 95 chrX 30703894 30703989 -131895941 - L2 LINE L2 -50 3222 3137 1600 165 26 36 chrX 30704302 30704611 -131895319 - AluJb SINE Alu -6 306 1 474 18 0 0 chrX 30704668 30704723 -131895207 + (TG)n Simple_repeat Simple_repeat 2 56 0 231 319 56 44 chrX 30704906 30705066 -131894864 - MLT1J2 LTR MaLR -3 447 286 415 271 79 13 chrX 30705122 30705302 -131894628 - MLT1J2 LTR MaLR -257 189 1 226 270 166 58 chrX 30705867 30706108 -131893822 + HAL1 LINE L1 812 1078 -1429 333 308 116 70 chrX 30706155 30706596 -131893334 + L1M2 LINE L1 756 1216 -5633 370 101 29 0 chrX 30707397 30707466 -131892464 + (GGGTG)n Simple_repeat Simple_repeat 3 73 0 617 320 116 22 chrX 30707961 30708496 -131891434 - L2 LINE L2 -625 2689 2105 2123 152 33 33 chrX 30709057 30709419 -131890511 - THE1B LTR MaLR 0 364 3 1032 205 35 0 chrX 30709811 30710011 -131889919 + MIR SINE MIR 40 246 -16 1940 128 10 0 chrX 30710051 30710341 -131889589 - L1PA13 LINE L1 -7 6156 5864 1313 204 26 71 chrX 30710691 30711073 -131888857 - LTR8 LTR ERV1 -151 540 176 279 210 0 0 chrX 30711073 30711135 -131888795 + MLT1A2-int LTR MaLR 1674 1735 0 446 206 22 11 chrX 30711135 30711227 -131888703 + MLT1A2 LTR MaLR 1 93 -281 * 2292 189 20 0 chrX 30711225 30711621 -131888309 - LTR57 LTR ERVL -7 404 1 929 203 65 76 chrX 30711621 30711912 -131888018 + MLT1A2 LTR MaLR 80 367 -7 402 69 0 0 chrX 30712078 30712136 -131887794 + (CA)n Simple_repeat Simple_repeat 1 58 0 775 265 21 0 chrX 30712179 30712368 -131887562 + MER58A DNA MER1_type 1 193 -31 231 286 0 29 chrX 30712563 30712633 -131887297 + MLT1L LTR MaLR 1 68 -547 1203 151 131 4 chrX 30713142 30713374 -131886556 + L1MA9 LINE L1 6014 6284 -28 285 29 0 0 chrX 30713374 30713408 -131886522 + (TA)n Simple_repeat Simple_repeat 2 35 0 1203 151 131 4 chrX 30713408 30713434 -131886496 + L1MA9 LINE L1 6284 6305 -7 396 340 92 5 chrX 30713477 30713662 -131886268 - MIR SINE MIR -4 258 58 228 35 0 0 chrX 30713823 30713852 -131886078 + (TG)n Simple_repeat Simple_repeat 2 30 0 201 182 0 23 chrX 30713863 30713907 -131886023 - MIR3 SINE MIR -156 52 10 343 267 13 0 chrX 30714279 30714354 -131885576 - ERVL LTR ERVL -2282 3482 3407 246 241 0 0 chrX 30714357 30714415 -131885515 + L1M4 LINE L1 714 771 -5771 244 96 58 0 chrX 30714422 30714474 -131885456 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1498 130 42 13 chrX 30714494 30714732 -131885198 - AluSq SINE Alu -32 281 37 2846 238 39 41 chrX 30714732 30714789 -131885141 + L1M4 LINE L1 766 822 -5824 180 0 0 0 chrX 30714789 30714809 -131885121 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 2846 238 39 41 chrX 30714809 30714986 -131884944 + L1M4 LINE L1 822 998 -5648 1141 236 26 92 chrX 30714986 30715376 -131884554 - MLT1A1 LTR MaLR -1 364 1 2846 238 39 41 chrX 30715376 30716195 -131883735 + L1M4 LINE L1 998 1819 -4827 2095 185 75 5 chrX 30716195 30716595 -131883335 - MSTA LTR MaLR 0 428 1 4820 173 40 16 chrX 30716595 30717485 -131882445 - MSTA-int LTR MaLR 0 1651 740 569 301 24 10 chrX 30717530 30717736 -131882194 + L1M4 LINE L1 1815 2023 -4623 386 273 81 12 chrX 30718478 30718639 -131881291 - MLT1J2 LTR MaLR -278 172 1 320 317 66 42 chrX 30719294 30719461 -131880469 + HAL1 LINE L1 921 1091 -1416 335 267 217 65 chrX 30719488 30719825 -131880105 + L1M2 LINE L1 920 1307 -5542 364 108 54 0 chrX 30720709 30720783 -131879147 + (GGGTG)n Simple_repeat Simple_repeat 1 78 0 2188 85 7 0 chrX 30720863 30721172 -131878758 + AluSp SINE Alu 2 312 0 520 321 120 23 chrX 30721512 30722044 -131877886 - L2 LINE L2 -626 2688 2105 2150 152 42 25 chrX 30722606 30722962 -131876968 - THE1B LTR MaLR 0 364 3 929 220 27 0 chrX 30723353 30723539 -131876391 + MIR SINE MIR 40 230 -32 1893 140 10 0 chrX 30723593 30723886 -131876044 - L1PA13 LINE L1 -7 6156 5861 522 226 26 0 chrX 30724461 30724576 -131875354 + MER5B DNA MER1_type 2 119 -59 566 241 154 12 chrX 30724605 30724767 -131875163 + MER5A DNA MER1_type 4 188 -1 293 231 0 15 chrX 30724778 30724843 -131875087 - MER5B DNA MER1_type -3 175 112 548 243 14 27 chrX 30724985 30725133 -131874797 - MER58B DNA MER1_type 0 341 196 967 228 18 18 chrX 30725388 30725612 -131874318 + MER58A DNA MER1_type 1 224 0 399 265 124 105 chrX 30726431 30726737 -131873193 - L2 LINE L2 -3 3269 2958 183 283 176 31 chrX 30726871 30727030 -131872900 + L2 LINE L2 1867 2048 -1266 189 0 0 0 chrX 30727151 30727172 -131872758 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 291 54 0 0 chrX 30727171 30727208 -131872722 + (TG)n Simple_repeat Simple_repeat 2 38 0 318 271 119 17 chrX 30727520 30727638 -131872292 - LTR67 LTR ERVL 0 557 428 232 119 48 24 chrX 30727691 30727733 -131872197 - LTR67 LTR ERVL -494 63 21 652 223 193 17 chrX 30727904 30728142 -131871788 + LTR16A1 LTR ERVL 177 456 -1 206 375 12 12 chrX 30728215 30728295 -131871635 + L2 LINE L2 3102 3181 -91 196 333 11 67 chrX 30728911 30729001 -131870929 - L2 LINE L2 -19 3253 3169 1095 213 77 0 chrX 30729493 30729700 -131870230 - MER58A DNA MER1_type -1 223 1 2362 179 12 2 chrX 30729904 30730313 -131869617 + MSTB LTR MaLR 1 413 -13 896 295 62 3 chrX 30730316 30730717 -131869213 - LTR16C LTR ERVL -27 464 3 846 280 101 67 chrX 30732089 30732525 -131867405 + LTR16B LTR ERVL 14 464 0 875 279 58 79 chrX 30733492 30733835 -131866095 + LTR16C LTR ERVL 85 419 -72 1424 225 41 41 chrX 30733835 30734200 -131865730 + MLT1A1 LTR MaLR 1 365 0 875 279 58 79 chrX 30734200 30734272 -131865658 + LTR16C LTR ERVL 419 491 0 1791 176 0 7 chrX 30735073 30735375 -131864555 - AluJb SINE Alu -12 300 1 1767 210 29 51 chrX 30735929 30736415 -131863515 + L1MC4 LINE L1 7337 7811 -231 799 226 0 46 chrX 30736415 30736610 -131863320 - AluJo SINE Alu 0 312 127 27 62 0 0 chrX 30736917 30736965 -131862965 + AT_rich Low_complexity Low_complexity 1 48 0 27 81 0 0 chrX 30737098 30737160 -131862770 + AT_rich Low_complexity Low_complexity 1 62 0 265 300 83 25 chrX 30737214 30737334 -131862596 + MIR SINE MIR 16 142 -66 567 43 0 0 chrX 30738485 30738555 -131861375 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 2035 108 14 14 chrX 30738555 30738843 -131861087 - AluSx SINE Alu -24 288 1 2156 284 83 19 chrX 30738992 30739830 -131860100 + HAL1 LINE L1 42 933 -1574 30936 118 10 68 chrX 30739883 30745394 -131854536 - L1P LINE L1 -948 5198 9 800 236 6 6 chrX 30745506 30745680 -131854250 + MER5B DNA MER1_type 5 178 0 509 265 127 0 chrX 30745691 30745848 -131854082 + MER5A DNA MER1_type 4 183 -6 207 214 0 0 chrX 30746245 30746287 -131853643 + MIR SINE MIR 216 257 -5 372 322 35 70 chrX 30747181 30747467 -131852463 + LTR16A1 LTR ERVL 182 457 0 240 309 99 25 chrX 30748835 30748916 -131851014 + MER5A DNA MER1_type 37 123 -66 231 325 0 12 chrX 30748932 30749012 -131850918 + MLT1K LTR MaLR 186 264 -324 340 298 39 10 chrX 30749022 30749126 -131850804 + L2 LINE L2 3147 3253 -19 30 0 0 0 chrX 30749390 30749420 -131850510 + AT_rich Low_complexity Low_complexity 1 30 0 209 333 13 13 chrX 30749450 30749528 -131850402 - MIR SINE MIR -126 136 59 386 256 311 11 chrX 30750031 30750211 -131849719 + MLT1K LTR MaLR 17 250 -338 1295 93 52 0 chrX 30750259 30750453 -131849477 - L1PA13 LINE L1 -8 6155 5952 804 295 26 57 chrX 30751093 30751517 -131848413 - LTR67 LTR ERVL -33 524 114 1405 223 54 5 chrX 30751594 30751962 -131847968 - L1 LINE L1 -1052 5094 4709 414 250 0 0 chrX 30751961 30752057 -131847873 - L1PA13 LINE L1 -5930 857 762 * 3269 191 10 5 chrX 30752059 30752661 -131847269 - L1PA13 LINE L1 -6077 710 106 219 114 0 0 chrX 30753954 30753989 -131845941 + (TG)n Simple_repeat Simple_repeat 2 36 0 1899 162 0 7 chrX 30754940 30755242 -131844688 - AluJb SINE Alu -12 300 1 7067 32 8 1 chrX 30758674 30759551 -131840379 + L1PA5 LINE L1 5285 6167 0 1801 252 22 8 chrX 30759909 30760639 -131839291 - L1ME LINE L1 -371 5795 5055 1885 251 58 8 chrX 30760714 30761456 -131838474 - L1ME LINE L1 -1203 4943 4165 270 239 36 126 chrX 30761762 30761929 -131838001 + MIR SINE MIR 108 259 -3 317 283 0 10 chrX 30762406 30762505 -131837425 + L1M4 LINE L1 5227 5324 -822 2544 203 80 51 chrX 30762517 30763016 -131836914 + L1MD3 LINE L1 6564 7047 -948 319 189 232 0 chrX 30763016 30763111 -131836819 + MLT1F1 LTR MaLR 9 125 -442 2544 203 80 51 chrX 30763111 30763691 -131836239 + L1MD3 LINE L1 7047 7994 -1 204 336 66 33 chrX 30763765 30763887 -131836043 + MER5A DNA MER1_type 63 188 -1 1958 165 67 5 chrX 30764721 30765126 -131834804 + MLT2C2 LTR ERVL 1 362 -35 468 51 0 0 chrX 30765215 30765274 -131834656 + (CA)n Simple_repeat Simple_repeat 2 60 0 268 337 0 11 chrX 30765515 30765604 -131834326 + MER5B DNA MER1_type 13 100 -78 206 314 35 12 chrX 30765668 30765754 -131834176 - MIR3 SINE MIR -36 172 85 2265 95 0 22 chrX 30766496 30766812 -131833118 + AluSg1 SINE Alu 1 309 0 237 159 0 0 chrX 30766871 30766915 -131833015 + (TA)n Simple_repeat Simple_repeat 2 45 0 1773 142 64 24 chrX 30767927 30768257 -131831673 - MER61A LTR ERV1 0 343 1 472 79 0 0 chrX 30768257 30768320 -131831610 - MER61A-int LTR ERV1 0 5217 5155 11527 96 40 18 chrX 30768346 30768543 -131831387 - MER61A-int LTR ERV1 -35 5182 4991 2204 110 0 3 chrX 30768543 30768842 -131831088 + AluSg SINE Alu 1 298 -12 11527 96 40 18 chrX 30768842 30770439 -131829491 - MER61A-int LTR ERV1 -226 4991 3349 1310 202 26 19 chrX 30770439 30770806 -131829124 - L1MEc LINE L1 -2776 3194 2822 2246 157 18 0 chrX 30770806 30771202 -131828728 + MER57A LTR ERV1 1 403 0 1310 202 26 19 chrX 30771202 30771260 -131828670 - L1MEc LINE L1 -3148 2822 2766 417 191 0 38 chrX 30771268 30771405 -131828525 - L1MEc LINE L1 -3840 2165 2007 2099 244 65 35 chrX 30771513 30772621 -131827309 - L1M3d LINE L1 -4518 1373 365 960 284 38 38 chrX 30773022 30773417 -131826513 - L1M3d LINE L1 -5496 395 1 289 209 57 38 chrX 30773421 30773526 -131826404 + MLT1J LTR MaLR 405 511 0 2952 121 0 0 chrX 30774987 30775425 -131824505 + L1P LINE L1 3 440 -5706 19979 31 0 0 chrX 30775425 30778607 -131821323 + L1PA5 LINE L1 2972 6153 -1 417 296 89 11 chrX 30778780 30778966 -131820964 - MIR SINE MIR -8 254 44 301 260 195 0 chrX 30779141 30779264 -131820666 - MLT1K LTR MaLR -9 579 433 21 36 0 0 chrX 30779282 30779310 -131820620 + AT_rich Low_complexity Low_complexity 1 28 0 364 347 14 23 chrX 30779363 30779661 -131820269 - MLT1K LTR MaLR -163 425 43 372 338 91 58 chrX 30779871 30780268 -131819662 + L2 LINE L2 2346 2755 -559 318 228 56 41 chrX 30831624 30831790 -131768140 - MLT1H LTR MaLR 0 595 382 656 219 46 127 chrX 30831843 30832126 -131767804 - MLT1H LTR MaLR -277 272 13 1220 243 48 68 chrX 30832718 30833151 -131766779 + L2 LINE L2 2782 3198 -115 3241 185 29 2 chrX 30833151 30833698 -131766232 - MER68 LTR ERV1 0 562 1 1220 243 48 68 chrX 30833698 30833812 -131766118 + L2 LINE L2 3198 3313 0 406 307 129 21 chrX 30835303 30835443 -131764487 - MIR3 SINE MIR -23 185 31 1089 183 16 0 chrX 30835478 30835664 -131764266 - MER5A DNA MER1_type 0 189 1 1652 245 113 10 chrX 30837167 30837673 -131762257 - MLT1G1 LTR MaLR -5 590 1 1406 263 68 3 chrX 30838062 30838431 -131761499 - LTR16C LTR ERVL 0 491 99 688 246 105 0 chrX 30838903 30839094 -131760836 + MIR SINE MIR 18 228 -34 1977 100 0 21 chrX 30839111 30839448 -131760482 - AluSx SINE Alu 0 331 1 321 336 0 25 chrX 30839464 30839586 -131760344 + MER5A DNA MER1_type 71 189 0 344 283 53 18 chrX 30839878 30839991 -131759939 - L2 LINE L2 -15 3298 3182 890 247 31 45 chrX 30840285 30840572 -131759358 + L2 LINE L2 3027 3309 -4 1300 215 104 17 chrX 30840603 30841007 -131758923 - L1ME3 LINE L1 -1 6161 5723 927 215 0 11 chrX 30841424 30841601 -131758329 + MER5B DNA MER1_type 4 178 0 992 221 47 4 chrX 30842145 30842380 -131757550 - MIR SINE MIR -15 247 3 673 248 147 0 chrX 30842375 30842532 -131757398 - MER5A DNA MER1_type -2 187 8 * 360 329 30 18 chrX 30842538 30842705 -131757225 - MIR SINE MIR -86 176 8 22 35 0 0 chrX 30843107 30843136 -131756794 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 30843538 30843559 -131756371 + AT_rich Low_complexity Low_complexity 1 21 0 226 301 80 44 chrX 30843783 30843896 -131756034 - L2 LINE L2 0 3272 3156 819 246 17 6 chrX 30843991 30844170 -131755760 + MER5A DNA MER1_type 2 182 -7 412 254 88 40 chrX 30844430 30844791 -131755139 - MLT1L LTR MaLR -2 613 215 2087 143 96 69 chrX 30845623 30846071 -131753859 - MLT1C LTR MaLR 0 467 8 24 32 0 0 chrX 30850820 30850851 -131749079 + AT_rich Low_complexity Low_complexity 1 31 0 1051 261 135 18 chrX 30851069 30851625 -131748305 - L1MC4a LINE L1 -1895 5913 5293 21 0 0 0 chrX 30851635 30851656 -131748274 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chrX 30851761 30851792 -131748138 + AT_rich Low_complexity Low_complexity 1 31 0 196 403 0 0 chrX 30851807 30851874 -131748056 + L2 LINE L2 3197 3263 -50 273 225 9 72 chrX 30852431 30852542 -131747388 - MLT1J2 LTR MaLR -29 421 318 243 169 92 46 chrX 30852934 30852999 -131746931 + MIR SINE MIR 91 158 -104 265 321 12 0 chrX 30853350 30853434 -131746496 + MIR SINE MIR 59 143 -119 356 250 236 14 chrX 30854680 30854828 -131745102 + MER5A DNA MER1_type 9 189 0 991 213 58 0 chrX 30855378 30855636 -131744294 + L1MC4 LINE L1 7383 7655 -387 42083 35 5 3 chrX 30855653 30861799 -131738131 - L1PA3 LINE L1 0 6155 3 1210 195 75 23 chrX 30861801 30862149 -131737781 + L1MC4 LINE L1 7643 8008 -34 320 280 170 0 chrX 30862346 30862446 -131737484 - MIR3 SINE MIR -2 206 90 604 104 0 0 chrX 30862736 30862842 -131737088 - L1MA5A LINE L1 -255 6042 5937 * 878 115 18 24 chrX 30862841 30863006 -131736924 + L1MA5A LINE L1 6114 6277 -20 4707 92 12 12 chrX 30863011 30863683 -131736247 - L1PA15 LINE L1 -4 6161 5490 264 287 54 78 chrX 30864517 30864775 -131735155 + MLT1J LTR MaLR 48 299 -212 228 67 0 0 chrX 30865254 30865284 -131734646 + (GA)n Simple_repeat Simple_repeat 1 30 0 473 259 69 23 chrX 30865496 30865627 -131734303 + MER91A DNA MER1_type 25 161 -35 1618 196 72 54 chrX 30865840 30866340 -131733590 - L1ME3 LINE L1 -6 6156 5648 252 200 0 0 chrX 30866368 30866423 -131733507 + (TA)n Simple_repeat Simple_repeat 2 56 0 268 220 11 22 chrX 30866423 30866514 -131733416 - L1MC4 LINE L1 -1339 6703 6614 252 0 0 0 chrX 30867031 30867059 -131732871 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 321 148 148 78 chrX 30867333 30867361 -131732569 + L2 LINE L2 3174 3199 -114 1731 164 74 11 chrX 30867361 30867714 -131732216 - THE1C LTR MaLR 0 375 1 321 148 148 78 chrX 30867714 30867800 -131732130 + L2 LINE L2 3199 3296 -17 28 29 0 0 chrX 30868469 30868504 -131731426 + AT_rich Low_complexity Low_complexity 1 35 0 270 264 38 0 chrX 30868527 30868605 -131731325 - MIR SINE MIR -62 146 60 434 271 98 64 chrX 30869521 30869961 -131729969 - MLT1L LTR MaLR -19 596 142 483 305 8 8 chrX 30870610 30870738 -131729192 - MIR3 SINE MIR -8 200 73 711 296 80 4 chrX 30871068 30871294 -131728636 - MIR SINE MIR -17 245 3 824 268 0 0 chrX 30871382 30871565 -131728365 + MER5A DNA MER1_type 1 183 -6 386 217 200 8 chrX 30871586 30871706 -131728224 - MIR3 SINE MIR -50 158 16 858 191 6 11 chrX 30871990 30872168 -131727762 - MER5B DNA MER1_type 0 178 2 409 184 144 103 chrX 30872953 30873127 -131726803 + MER5A DNA MER1_type 9 189 0 269 279 13 0 chrX 30873174 30873253 -131726677 + L2 LINE L2 2966 3045 -227 2383 88 7 0 chrX 30874237 30874544 -131725386 + AluY SINE Alu 1 309 -2 502 253 70 70 chrX 30875536 30875601 -131724329 - MER5A DNA MER1_type 0 189 125 6629 63 10 2 chrX 30875601 30876799 -131723131 + L1PA8A LINE L1 4927 6131 0 502 253 70 70 chrX 30876799 30876919 -131723011 - MER5A DNA MER1_type -63 126 4 24 32 0 0 chrX 30877089 30877120 -131722810 + AT_rich Low_complexity Low_complexity 1 31 0 336 160 21 96 chrX 30877165 30877224 -131722706 - MER5B DNA MER1_type 0 178 127 2220 119 0 3 chrX 30877224 30877527 -131722403 + AluSx SINE Alu 1 302 -10 336 160 21 96 chrX 30877527 30877561 -131722369 - MER5B DNA MER1_type -51 127 92 4658 57 16 0 chrX 30877944 30878525 -131721405 - L1PA5 LINE L1 -1 6153 5564 26 0 0 0 chrX 30878534 30878560 -131721370 + AT_rich Low_complexity Low_complexity 1 26 0 2054 52 0 0 chrX 30878811 30879062 -131720868 - L1PA5 LINE L1 -5 6149 5899 234 128 0 0 chrX 30880478 30880517 -131719413 + (CA)n Simple_repeat Simple_repeat 2 40 0 214 360 36 36 chrX 30881244 30881383 -131718547 + L2 LINE L2 3134 3272 0 447 276 0 29 chrX 30881721 30881826 -131718104 + L2 LINE L2 3202 3303 -10 211 231 39 0 chrX 30881828 30881880 -131718050 + GA-rich Low_complexity Low_complexity 2 55 0 296 297 55 33 chrX 30881946 30882037 -131717893 - L2 LINE L2 -43 3229 3137 191 279 100 86 chrX 30883625 30883765 -131716165 + L2 LINE L2 2915 3056 -216 1877 245 53 6 chrX 30884074 30884543 -131715387 - LTR16C LTR ERVL 0 491 1 1479 161 7 65 chrX 30884565 30884844 -131715086 - AluJo SINE Alu -10 302 40 1310 215 78 43 chrX 30885436 30885860 -131714070 - MLT2B1 LTR ERVL 0 414 1 237 335 116 43 chrX 30885887 30886051 -131713879 + L2 LINE L2 3097 3272 0 457 283 25 0 chrX 30886058 30886178 -131713752 + L2 LINE L2 3190 3312 -1 1116 190 9 9 chrX 30886299 30886510 -131713420 - MER58A DNA MER1_type -4 220 10 997 162 88 28 chrX 30887095 30887379 -131712551 - MER33 DNA MER1_type -1 323 23 544 252 168 7 chrX 30887399 30887554 -131712376 + MER5A DNA MER1_type 10 189 0 21 57 0 0 chrX 30887735 30887770 -131712160 + AT_rich Low_complexity Low_complexity 1 35 0 200 345 0 52 chrX 30888141 30888257 -131711673 - L3b LINE CR1 -212 1371 1262 361 330 0 27 chrX 30889134 30889246 -131710684 + MIR SINE MIR 37 145 -63 21 0 0 0 chrX 30890020 30890041 -131709889 + AT_rich Low_complexity Low_complexity 1 21 0 572 357 130 33 chrX 30890325 30890920 -131709010 - L2 LINE L2 -10 3262 2606 624 259 137 29 chrX 30891047 30891391 -131708539 - LTR16A1 LTR ERVL -76 381 1 225 286 0 0 chrX 30891585 30891634 -131708296 + L2 LINE L2 3248 3296 -17 236 146 0 0 chrX 30891709 30891757 -131708173 - L1MB5 LINE L1 0 6174 6127 2880 135 23 2 chrX 30891761 30892242 -131707688 - L1PA15 LINE L1 0 6165 5675 221 359 83 39 chrX 30892532 30892713 -131707217 + L2 LINE L2 2913 3101 -171 755 211 46 40 chrX 30892878 30893053 -131706877 - MER45A DNA AcHobo -2 176 1 236 75 0 25 chrX 30893095 30893135 -131706795 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 1409 147 51 61 chrX 30893293 30893668 -131706262 - LTR37A LTR ERV1 0 426 56 281 187 421 0 chrX 30894296 30894403 -131705527 + MER5A DNA MER1_type 9 160 -29 21 57 0 0 chrX 30894715 30894750 -131705180 + AT_rich Low_complexity Low_complexity 1 35 0 2253 154 65 0 chrX 30894895 30895298 -131704632 - MSTB1 LTR MaLR 0 432 4 565 221 16 0 chrX 30895333 30895460 -131704470 - L1MB5 LINE L1 -2060 5748 5620 304 125 0 25 chrX 30895462 30895542 -131704388 + (TA)n Simple_repeat Simple_repeat 1 78 0 560 253 16 55 chrX 30896072 30896254 -131703676 + MIR SINE MIR 88 262 0 208 255 0 0 chrX 30896291 30896338 -131703592 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 208 0 0 0 chrX 30896402 30896425 -131703505 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1250 165 85 31 chrX 30896425 30896551 -131703379 - AluJo SINE Alu -30 282 164 2652 109 48 10 chrX 30896551 30896963 -131702967 + MSTA LTR MaLR 1 428 0 1250 165 85 31 chrX 30896963 30897096 -131702834 - AluJo SINE Alu -148 164 9 357 338 133 18 chrX 30897356 30897747 -131702183 - L1MB5 LINE L1 -768 5378 4943 681 270 33 7 chrX 30897892 30898196 -131701734 - L1MB5 LINE L1 -1498 4648 4337 232 317 36 36 chrX 30898335 30898556 -131701374 - L1MB5 LINE L1 -1870 4276 4056 933 287 36 8 chrX 30898614 30898976 -131700954 + L2 LINE L2 2700 3070 -243 441 200 39 23 chrX 30899319 30899449 -131700481 - L1PB4 LINE L1 -1 6155 6024 2484 168 97 9 chrX 30899584 30900108 -131699822 - MER101B LTR ERV1 0 570 1 584 291 123 30 chrX 30900221 30900554 -131699376 - L1MB5 LINE L1 -2661 3485 3122 1106 238 41 3 chrX 30901391 30901732 -131698198 + Charlie4a DNA MER1_type 91 444 -64 281 26 26 0 chrX 30904343 30904381 -131695549 + (TG)n Simple_repeat Simple_repeat 2 40 0 212 235 0 0 chrX 30904503 30904554 -131695376 + (TG)n Simple_repeat Simple_repeat 1 51 0 293 307 59 10 chrX 30904945 30905046 -131694884 - MIR SINE MIR -154 108 3 220 193 175 0 chrX 30905046 30905101 -131694829 - L2 LINE L2 -56 3257 3193 207 69 0 0 chrX 30908032 30908061 -131691869 + (TG)n Simple_repeat Simple_repeat 2 30 0 1311 164 45 11 chrX 30908332 30908619 -131691311 - MER33 DNA MER1_type -22 302 6 320 202 65 40 chrX 30908774 30908898 -131691032 - MER103 DNA DNA -3 163 37 2464 11 0 0 chrX 30909296 30909568 -131690362 - AluYa5 SINE Alu -1 310 39 25 31 0 0 chrX 30910633 30910665 -131689265 + AT_rich Low_complexity Low_complexity 1 32 0 298 287 119 10 chrX 30912070 30912171 -131687759 - MIR3 SINE MIR -9 199 88 180 0 0 0 chrX 30912942 30912962 -131686968 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 314 231 0 0 chrX 30913625 30913703 -131686227 + MER116 DNA Mariner 1 78 -2 214 241 74 0 chrX 30913829 30913883 -131686047 - L2 LINE L2 -5 3308 3251 * 272 109 164 18 chrX 30913850 30913905 -131686025 - MIR SINE MIR -24 238 176 294 29 0 0 chrX 30914363 30914398 -131685532 + (TC)n Simple_repeat Simple_repeat 2 36 0 384 22 0 0 chrX 30914399 30914444 -131685486 + (CA)n Simple_repeat Simple_repeat 2 46 0 1640 138 0 71 chrX 30914477 30914760 -131685170 - AluJo SINE Alu -17 295 33 670 147 0 0 chrX 30914762 30914864 -131685066 - AluJ/FLAM SINE Alu -210 102 1 2550 57 0 19 chrX 30915232 30915570 -131684360 - AluY SINE Alu 0 332 1 359 236 99 19 chrX 30915640 30915772 -131684158 - MIR SINE MIR -6 256 113 264 237 0 0 chrX 30916030 30916089 -131683841 + L1ME4a LINE L1 5978 6036 -85 22 56 0 0 chrX 30917304 30917340 -131682590 + AT_rich Low_complexity Low_complexity 1 36 0 322 269 37 45 chrX 30917375 30917509 -131682421 - MIR SINE MIR -50 212 80 845 244 27 23 chrX 30917783 30918004 -131681926 + MER58A DNA MER1_type 3 224 0 430 244 58 12 chrX 30918695 30918859 -131681071 + MER63 DNA MER1_type 38 1060 0 1029 214 15 0 chrX 30919002 30919203 -131680727 + AluJo SINE Alu 87 290 -22 307 299 0 8 chrX 30919240 30919357 -131680573 - L1ME LINE L1 -305 5816 5701 24 53 0 0 chrX 30919425 30919463 -131680467 + AT_rich Low_complexity Low_complexity 1 38 0 2067 112 54 0 chrX 30919611 30919905 -131680025 - AluSx SINE Alu -2 310 1 21 36 0 0 chrX 30920304 30920332 -131679598 + AT_rich Low_complexity Low_complexity 1 28 0 333 234 169 45 chrX 30920553 30920681 -131679249 - L1MC5 LINE L1 -37 7924 7773 429 20 0 0 chrX 30920681 30920731 -131679199 + (TG)n Simple_repeat Simple_repeat 2 51 0 333 234 169 45 chrX 30920731 30920756 -131679174 - L1MC5 LINE L1 -188 7773 7752 244 301 71 35 chrX 30921080 30921193 -131678737 - MIR SINE MIR -79 183 67 1042 273 109 40 chrX 30921903 30922426 -131677504 - MLT1G1 LTR MaLR -34 561 3 1121 216 23 0 chrX 30923321 30923539 -131676391 + MER58A DNA MER1_type 2 224 0 342 238 12 151 chrX 30924361 30924533 -131675397 - MER5A DNA MER1_type -25 164 6 1308 181 8 4 chrX 30924881 30925140 -131674790 - L1MB7 LINE L1 -15 6169 5910 248 255 170 9 chrX 30925439 30925545 -131674385 - MIR SINE MIR -19 243 121 1437 156 0 0 chrX 30925545 30925757 -131674173 + AluJo SINE Alu 1 212 -100 234 0 0 0 chrX 30925768 30925794 -131674136 + (A)n Simple_repeat Simple_repeat 1 26 0 351 334 60 108 chrX 30925861 30926193 -131673737 - L2 LINE L2 0 3272 2957 * 577 357 109 6 chrX 30926190 30926529 -131673401 - L2 LINE L2 -529 2785 2412 700 223 145 42 chrX 30926586 30926918 -131673012 - LTR37A LTR ERV1 -53 373 8 327 277 40 10 chrX 30928750 30928851 -131671079 + MIR SINE MIR 40 143 -119 315 267 108 108 chrX 30929730 30929981 -131669949 + MER102a DNA MER1_type 77 327 -3 189 167 0 0 chrX 30930052 30930088 -131669842 - MER5C DNA MER1_type 0 324 289 300 227 40 0 chrX 30930253 30930328 -131669602 - MER5C DNA MER1_type -202 122 45 267 334 17 14 chrX 30930828 30930955 -131668975 - MIR SINE MIR -62 146 20 1631 189 3 20 chrX 30931476 30931773 -131668157 + AluJo SINE Alu 1 292 -20 2286 95 3 0 chrX 30931778 30932072 -131667858 + AluSq SINE Alu 1 295 -18 2467 53 0 31 chrX 30932388 30932706 -131667224 + AluY SINE Alu 1 308 -3 1365 159 9 4 chrX 30932965 30933191 -131666739 - AluJo SINE Alu 0 312 86 275 229 57 132 chrX 30933246 30933526 -131666404 - MER31-int LTR ERV1 -2028 2908 2650 1633 183 60 100 chrX 30933673 30933856 -131666074 + MLT1D LTR MaLR 6 195 -310 180 0 0 0 chrX 30933856 30933876 -131666054 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 6946 55 10 11 chrX 30933876 30935466 -131664464 - SVA Other Other -723 1367 11 1633 183 60 100 chrX 30935466 30935796 -131664134 + MLT1D LTR MaLR 193 502 -3 347 223 39 31 chrX 30936354 30936484 -131663446 - MER31-int LTR ERV1 -3021 1915 1785 28 48 0 0 chrX 30936608 30936650 -131663280 + AT_rich Low_complexity Low_complexity 1 42 0 350 170 123 53 chrX 30936691 30936862 -131663068 - MER31-int LTR ERV1 -3465 1471 1289 1098 68 0 8 chrX 30937738 30937871 -131662059 + AluSq/x SINE Alu 1 132 -181 22 0 0 0 chrX 30937871 30937893 -131662037 + AT_rich Low_complexity Low_complexity 1 22 0 732 315 26 13 chrX 30938643 30938945 -131660985 + LTR16C LTR ERVL 159 464 -27 232 279 108 9 chrX 30939746 30939857 -131660073 + L1ME4a LINE L1 5969 6090 -31 549 306 95 0 chrX 30940044 30940266 -131659664 - MLT1L LTR MaLR -1 614 372 584 295 90 8 chrX 30940272 30940738 -131659192 - MLT1G1 LTR MaLR -3 592 1 227 250 17 0 chrX 30940861 30940921 -131659009 - MLT1L LTR MaLR -387 228 168 252 263 9 70 chrX 30941134 30941248 -131658682 - MLT1L LTR MaLR -508 107 1 545 286 54 15 chrX 30941345 30941548 -131658382 - L3 LINE CR1 -1 1576 1366 340 147 53 0 chrX 30942107 30942182 -131657748 - MLT1H LTR MaLR 0 549 471 392 255 0 6 chrX 30942228 30942385 -131657545 + (TA)n Simple_repeat Simple_repeat 1 156 0 357 339 67 18 chrX 30942568 30942733 -131657197 - L1ME3A LINE L1 -208 5962 5790 312 218 0 26 chrX 30942733 30942811 -131657119 - MER58B DNA MER1_type -3 338 263 195 69 0 0 chrX 30944018 30944047 -131655883 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1013 235 38 4 chrX 30944489 30944727 -131655203 + MIR SINE MIR 2 247 -15 2332 238 75 26 chrX 30945304 30946061 -131653869 - L1ME3A LINE L1 -11 6419 5626 538 257 88 64 chrX 30946150 30946684 -131653246 - L1ME3A LINE L1 -4595 1992 1446 604 293 84 30 chrX 30946716 30947086 -131652844 - L1MEd LINE L1 -5052 1344 935 4004 117 54 34 chrX 30947749 30948504 -131651426 - L1PB4 LINE L1 0 6156 5387 3552 186 32 8 chrX 30948636 30949407 -131650523 + L1MB8 LINE L1 5351 6140 -38 251 231 66 11 chrX 30949408 30949499 -131650431 - L1MC5 LINE L1 -31 7930 7835 279 360 63 18 chrX 30949509 30949731 -131650199 - L2 LINE L2 -1595 1719 1488 2094 187 60 17 chrX 30951519 30952201 -131647729 + L1MC1 LINE L1 4745 5467 -743 * 2323 131 91 11 chrX 30952196 30952638 -131647292 + L1MA9 LINE L1 5793 6269 -43 5453 124 2 34 chrX 30952638 30953533 -131646397 + L1MC1 LINE L1 5465 6331 -2 222 200 22 0 chrX 30953590 30953635 -131646295 - MIR SINE MIR -111 151 106 905 301 46 37 chrX 30954322 30954757 -131645173 - LTR16C LTR ERVL 0 491 53 23 33 0 0 chrX 30958282 30958312 -131641618 + AT_rich Low_complexity Low_complexity 1 30 0 280 283 97 9 chrX 30958641 30958754 -131641176 + MIR SINE MIR 102 224 -38 6280 127 21 16 chrX 30959890 30961037 -131638893 - L1MA10 LINE L1 -7 6327 5155 1020 233 37 10 chrX 30961131 30961427 -131638503 - L1MC4 LINE L1 -1 8041 7738 597 14 0 0 chrX 30962068 30962138 -131637792 + (CA)n Simple_repeat Simple_repeat 2 71 0 464 286 103 13 chrX 30963497 30963731 -131636199 - MLT1L LTR MaLR -10 605 351 1301 174 45 7 chrX 30964228 30964516 -131635414 + MER33 DNA MER1_type 3 301 -23 2204 112 0 13 chrX 30964748 30965062 -131634868 - AluSx SINE Alu -2 310 1 619 186 26 64 chrX 30965078 30965234 -131634696 + MER5B DNA MER1_type 2 151 -27 14838 167 16 13 chrX 30966345 30969809 -131630121 + L1MA3 LINE L1 3398 6880 -844 2528 51 0 0 chrX 30969809 30970105 -131629825 - AluY SINE Alu -15 296 1 14838 167 16 13 chrX 30970105 30970218 -131629712 + L1MA3 LINE L1 6880 6991 -733 1085 128 21 0 chrX 30970218 30970405 -131629525 - Tigger1 DNA MER2_type -1114 1304 1114 3101 115 18 37 chrX 30970410 30970957 -131628973 + L1MA3 LINE L1 7188 7724 0 10401 123 23 12 chrX 30970964 30972722 -131627208 - Tigger1 DNA MER2_type -641 1777 1 351 296 128 35 chrX 30973467 30973693 -131626237 - MIR SINE MIR 0 262 16 579 288 12 21 chrX 30974496 30974739 -131625191 - MER112 DNA MER1_type -14 246 6 2071 108 6 54 chrX 30974740 30975054 -131624876 + AluSx SINE Alu 1 299 -13 3674 88 5 27 chrX 30975121 30975205 -131624725 + L1P LINE L1 3002 3086 -3060 2315 91 16 0 chrX 30975205 30975513 -131624417 + AluSp SINE Alu 1 313 0 3674 88 5 27 chrX 30975513 30976021 -131623909 + L1P LINE L1 3086 3581 -2565 484 308 75 13 chrX 30976202 30976434 -131623496 + HAL1 LINE L1 1223 1480 -1027 180 77 0 0 chrX 30976434 30976460 -131623470 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 484 308 75 13 chrX 30976460 30976535 -131623395 + HAL1 LINE L1 1480 1549 -958 926 122 0 8 chrX 30976654 30976785 -131623145 - AluSg/x SINE Alu -12 298 169 273 294 11 0 chrX 30977169 30977261 -131622669 + L1ME3A LINE L1 3 95 -5975 311 330 73 0 chrX 30977414 30977632 -131622298 + L1ME3A LINE L1 2545 2778 -3302 262 304 0 36 chrX 30977672 30977810 -131622120 + L1ME3A LINE L1 3408 3540 -2540 886 268 98 45 chrX 30977826 30978297 -131621633 + L1ME3A LINE L1 5471 5966 -138 3233 109 12 32 chrX 30978390 30978924 -131621006 - L1MA4 LINE L1 -436 5864 5342 3047 113 7 0 chrX 30978924 30979349 -131620581 - MSTA LTR MaLR 0 428 1 3233 109 12 32 chrX 30979349 30979400 -131620530 - L1MA4 LINE L1 -958 5342 5291 512 95 30 0 chrX 30980035 30980137 -131619793 + L1MA4 LINE L1 5777 5885 -412 1955 161 20 55 chrX 30980152 30980556 -131619374 + MLT1B LTR MaLR 1 390 0 528 304 22 78 chrX 30980652 30980882 -131619048 + L3 LINE CR1 902 1118 -459 * 537 289 56 15 chrX 30980881 30981078 -131618852 - MIR SINE MIR -6 256 52 1080 330 139 46 chrX 30981364 30983426 -131616504 + L2 LINE L2 239 2491 -823 1254 204 41 55 chrX 30983656 30984053 -131615877 - MLT1B LTR MaLR 0 396 1 472 336 41 44 chrX 30984722 30985017 -131614913 + MLT1H LTR MaLR 7 300 -249 265 153 7 0 chrX 30985143 30985202 -131614728 + MLT1E3 LTR MaLR 489 611 0 374 345 86 46 chrX 30985209 30985518 -131614412 + L2 LINE L2 2621 2965 -307 2147 179 63 16 chrX 30985518 30985964 -131613966 - MLT1C LTR MaLR 0 467 1 374 345 86 46 chrX 30985964 30986081 -131613849 + L2 LINE L2 2965 3076 -196 379 353 0 25 chrX 30987230 30987352 -131612578 + L2 LINE L2 3106 3224 -48 292 128 0 0 chrX 30987443 30987490 -131612440 + MLT1I LTR MaLR 98 144 -265 2023 154 0 0 chrX 30987508 30987806 -131612124 + AluSx SINE Alu 15 312 0 466 282 74 63 chrX 30987882 30988166 -131611764 + MLT1H LTR MaLR 247 533 -16 551 189 0 0 chrX 30988634 30988740 -131611190 - MER63 DNA MER1_type -94 742 11 735 302 40 55 chrX 30990464 30990861 -131609069 - L1M4 LINE L1 -5802 740 350 232 337 97 15 chrX 30990992 30991188 -131608742 - L1M4 LINE L1 -6312 230 19 364 152 0 0 chrX 30991196 30991262 -131608668 - MLT1B LTR MaLR -2 388 323 535 132 94 9 chrX 30991266 30991372 -131608558 - MLT1B LTR MaLR -243 147 33 26 0 0 0 chrX 30991430 30991456 -131608474 + AT_rich Low_complexity Low_complexity 1 26 0 1989 154 13 10 chrX 30991904 30992094 -131607836 - AluJo SINE Alu 0 312 119 198 0 0 0 chrX 30992094 30992116 -131607814 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1989 154 13 10 chrX 30992116 30992236 -131607694 - AluJo SINE Alu -193 119 1 427 229 57 14 chrX 30993626 30993766 -131606164 - L1MC4 LINE L1 -1 8041 7896 1135 121 0 0 chrX 30993791 30993948 -131605982 - AluSp/q SINE Alu 0 313 157 900 189 6 11 chrX 30993948 30994128 -131605802 - MLT1D LTR MaLR -326 179 1 303 277 107 0 chrX 30994128 30994240 -131605690 + MIR SINE MIR 139 262 0 880 212 10 30 chrX 30994818 30995021 -131604909 + LTR16A LTR ERVL 246 444 -6 351 274 86 98 chrX 30995028 30995353 -131604577 - MLT1K LTR MaLR -86 502 182 22 0 0 0 chrX 30995705 30995727 -131604203 + AT_rich Low_complexity Low_complexity 1 22 0 219 320 67 0 chrX 30995756 30995831 -131604099 + MIR SINE MIR 67 146 -62 41942 44 0 1 chrX 30995837 31001987 -131597943 + L1PA4 LINE L1 2 6151 -4 989 250 88 70 chrX 31003773 31004273 -131595657 - LTR33A LTR ERVL -14 509 1 758 249 47 26 chrX 31004912 31005105 -131594825 + MIR SINE MIR 7 203 -59 3635 139 48 8 chrX 31005147 31005859 -131594071 - Tigger3(Golem) DNA MER2_type 0 3029 2290 2257 189 48 67 chrX 31055906 31056375 -131543555 - L1MD2 LINE L1 -3 6356 5903 1694 168 7 23 chrX 31056375 31056678 -131543252 - AluJb SINE Alu -14 298 1 2257 189 48 67 chrX 31056678 31056896 -131543034 - L1MD2 LINE L1 -456 5903 5682 794 192 176 0 chrX 31057880 31058062 -131541868 + MER58A DNA MER1_type 2 215 -9 2338 144 8 0 chrX 31058369 31058731 -131541199 + MLT1A1 LTR MaLR 1 365 0 2267 115 0 3 chrX 31059259 31059563 -131540367 + AluSx SINE Alu 1 303 -9 2221 121 3 0 chrX 31059712 31060017 -131539913 - AluSx SINE Alu -6 306 1 2127 122 20 7 chrX 31060633 31060936 -131538994 - AluSx SINE Alu -4 308 2 21 0 0 0 chrX 31061028 31061049 -131538881 + AT_rich Low_complexity Low_complexity 1 21 0 195 232 14 116 chrX 31061979 31062048 -131537882 + L2 LINE L2 3211 3272 0 585 129 0 0 chrX 31062902 31062995 -131536935 + (CA)n Simple_repeat Simple_repeat 2 94 0 195 0 56 28 chrX 31063375 31063411 -131536519 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 740 310 29 4 chrX 31064763 31065005 -131534925 + MIR SINE MIR 15 262 0 289 377 22 22 chrX 31065357 31065495 -131534435 + MIR3 SINE MIR 10 147 -61 294 246 14 14 chrX 31065671 31065740 -131534190 + L2 LINE L2 3195 3263 -9 620 257 127 30 chrX 31066430 31066768 -131533162 - HAL1 LINE L1 -9 2498 2128 337 291 63 25 chrX 31067243 31067401 -131532529 - HAL1b LINE L1 -446 902 739 219 228 13 38 chrX 31067775 31067854 -131532076 + (CATATA)n Simple_repeat Simple_repeat 3 79 0 2179 108 0 0 chrX 31068067 31068385 -131531545 + AluSx SINE Alu 1 318 0 281 209 124 124 chrX 31068685 31068814 -131531116 - MER5B DNA MER1_type -49 129 1 294 234 126 18 chrX 31070113 31070224 -131529706 + MIR SINE MIR 70 192 -70 42 71 0 0 chrX 31070280 31070364 -131529566 + AT_rich Low_complexity Low_complexity 1 84 0 564 303 42 0 chrX 31070396 31070561 -131529369 - MIR SINE MIR -77 185 14 1130 174 75 72 chrX 31070561 31070644 -131529286 - MLT1D LTR MaLR 0 505 424 3769 100 9 104 chrX 31070644 31071259 -131528671 - MER51A LTR ERV1 0 634 93 2381 69 3 41 chrX 31071259 31071576 -131528354 - AluSp SINE Alu -8 305 1 3769 100 9 104 chrX 31071576 31071661 -131528269 - MER51A LTR ERV1 -541 93 1 1130 174 75 72 chrX 31071661 31072024 -131527906 - MLT1D LTR MaLR -81 424 1 374 231 209 8 chrX 31072046 31072180 -131527750 - MIR3 SINE MIR -15 193 33 2297 241 54 2 chrX 31072559 31073111 -131526819 - MLT1G LTR MaLR 0 590 10 385 275 67 34 chrX 31073141 31073213 -131526717 - MLT1L LTR MaLR -20 595 527 2632 106 35 30 chrX 31073213 31073639 -131526291 + MSTA LTR MaLR 1 428 0 385 275 67 34 chrX 31073639 31073744 -131526186 - MLT1L LTR MaLR -88 527 412 234 303 26 0 chrX 31073855 31073931 -131525999 - MLT1L LTR MaLR -333 282 205 26 64 0 0 chrX 31074158 31074205 -131525725 + AT_rich Low_complexity Low_complexity 1 47 0 379 287 48 59 chrX 31074850 31075325 -131524605 + L1MEd LINE L1 540 1007 -5112 2217 103 0 3 chrX 31075325 31075616 -131524314 + AluY SINE Alu 5 294 -17 379 287 48 59 chrX 31075616 31075857 -131524073 + L1MEd LINE L1 1007 1249 -4870 31 0 0 0 chrX 31076292 31076323 -131523607 + AT_rich Low_complexity Low_complexity 1 31 0 317 233 47 23 chrX 31076694 31076780 -131523150 - L1M LINE L1 -2422 5386 5299 1281 206 26 18 chrX 31076926 31077336 -131522594 - MLT2D LTR ERVL -50 414 1 424 216 116 66 chrX 31077358 31077539 -131522391 - LTR33 LTR ERVL 0 521 332 614 274 111 5 chrX 31077625 31077815 -131522115 - LTR33 LTR ERVL -311 210 1 451 286 60 46 chrX 31077815 31078032 -131521898 + L1MEd LINE L1 1248 1467 -4843 620 197 0 7 chrX 31078032 31078174 -131521756 - L1MA5 LINE L1 -3 6297 6157 2025 144 72 55 chrX 31078177 31078215 -131521715 - MSTA LTR MaLR -4 424 388 2438 87 3 3 chrX 31078215 31078524 -131521406 + AluSp SINE Alu 5 313 0 2025 144 72 55 chrX 31078524 31078902 -131521028 - MSTA LTR MaLR -40 388 1 3032 239 59 15 chrX 31078902 31079942 -131519988 - MST-int LTR MaLR 0 1735 546 1062 128 0 0 chrX 31079940 31080104 -131519826 - L1 LINE L1 -1897 4249 4086 * 584 291 109 30 chrX 31080124 31081274 -131518656 + L1MEd LINE L1 1478 2683 -3446 485 220 11 77 chrX 31082083 31082265 -131517665 - MER5B DNA MER1_type -4 174 5 186 43 0 0 chrX 31082413 31082436 -131517494 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 870 178 50 0 chrX 31082529 31082709 -131517221 + MER20 DNA MER1_type 31 219 0 211 277 36 71 chrX 31082714 31082826 -131517104 - L2 LINE L2 -65 3248 3141 305 191 19 19 chrX 31082835 31082888 -131517042 + (TA)n Simple_repeat Simple_repeat 1 53 -52 2369 138 26 54 chrX 31082888 31083388 -131516542 + LTR19A LTR ERV1 1 486 0 305 191 19 19 chrX 31083388 31083439 -131516491 + (TA)n Simple_repeat Simple_repeat 52 105 0 271 388 33 0 chrX 31083452 31083604 -131516326 - L2 LINE L2 -169 3144 2988 1015 309 126 2 chrX 31083639 31084085 -131515845 - L2 LINE L2 -1963 1351 851 2104 141 3 0 chrX 31084104 31084408 -131515522 - AluSx SINE Alu -5 307 3 320 326 96 48 chrX 31086791 31086978 -131512952 + L2 LINE L2 3077 3272 0 1972 130 18 7 chrX 31087053 31087337 -131512593 + AluSx SINE Alu 5 291 -21 21 0 0 0 chrX 31087339 31087360 -131512570 + AT_rich Low_complexity Low_complexity 1 21 0 2098 129 52 19 chrX 31087751 31088114 -131511816 - THE1C LTR MaLR 0 375 1 9343 108 60 14 chrX 31088119 31089624 -131510306 - THE1C-int LTR MaLR -6 1574 1 1219 134 90 80 chrX 31089624 31090045 -131509885 - THE1C LTR MaLR 0 428 1 204 299 52 0 chrX 31090407 31090484 -131509446 - L2 LINE L2 -9 3263 3183 188 349 82 14 chrX 31090497 31090643 -131509287 - L2 LINE L2 -251 3021 2866 185 319 234 7 chrX 31090649 31090790 -131509140 - L2 LINE L2 -1064 2250 2078 258 105 0 0 chrX 31090830 31090868 -131509062 + (CA)n Simple_repeat Simple_repeat 1 38 0 447 163 38 123 chrX 31091125 31091283 -131508647 + MLT1H LTR MaLR 408 546 -3 390 355 112 25 chrX 31091289 31091805 -131508125 - L2 LINE L2 -1313 2001 1441 2162 100 0 45 chrX 31092148 31092287 -131507643 + AluSg SINE Alu 5 149 -161 899 47 0 0 chrX 31092287 31092394 -131507536 + U6 snRNA snRNA 1 107 0 5335 24 7 0 chrX 31092394 31093014 -131506916 + L1PA5 LINE L1 5529 6152 -2 2162 100 0 45 chrX 31093014 31093184 -131506746 + AluSg SINE Alu 147 301 -9 1265 261 99 21 chrX 31094134 31094567 -131505363 - MLT1H LTR MaLR -2 547 81 2186 114 3 16 chrX 31096431 31096748 -131503182 - AluSq SINE Alu 0 313 1 4128 228 23 34 chrX 31096859 31098178 -131501752 + L1MCb LINE L1 1 1316 -4850 2375 67 0 3 chrX 31098507 31098807 -131501123 - AluY SINE Alu -12 299 1 1036 97 0 0 chrX 31098807 31098941 -131500989 - AluY SINE Alu -177 134 1 774 288 57 50 chrX 31098944 31099347 -131500583 - MLT1J LTR MaLR -74 437 32 510 129 0 0 chrX 31099347 31099432 -131500498 + (GGGA)n Simple_repeat Simple_repeat 4 88 0 216 200 0 0 chrX 31099432 31099477 -131500453 + A-rich Low_complexity Low_complexity 2 46 0 1472 192 86 28 chrX 31099676 31099860 -131500070 - MER63B DNA MER1_type -643 419 247 14635 124 34 22 chrX 31099860 31102248 -131497682 + Tigger1 DNA MER2_type 1 2418 0 1472 192 86 28 chrX 31102248 31102459 -131497471 - MER63B DNA MER1_type -815 247 1 568 248 65 0 chrX 31102465 31102618 -131497312 - MLT1J LTR MaLR -339 172 10 30 0 0 0 chrX 31102903 31102933 -131496997 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 31103847 31103870 -131496060 + AT_rich Low_complexity Low_complexity 1 23 0 2713 162 14 73 chrX 31104747 31104868 -131495062 - MER41C LTR ERV1 0 554 427 2292 97 7 7 chrX 31104868 31105178 -131494752 + AluSx SINE Alu 1 310 -2 2713 162 14 73 chrX 31105178 31105644 -131494286 - MER41C LTR ERV1 -127 427 2 715 175 164 23 chrX 31105645 31105816 -131494114 - HERVK14 LTR ERVK -186 5759 5565 * 927 110 7 21 chrX 31105693 31105838 -131494092 - MER41C-int LTR ERV1 -76 5870 5728 * 4392 103 81 43 chrX 31105833 31106651 -131493279 - MER41C-int LTR ERV1 -460 5486 4638 18683 148 53 23 chrX 31106658 31110193 -131489737 - MER41C-int LTR ERV1 -1926 4020 381 439 221 0 0 chrX 31110297 31110392 -131489538 - PRIMA41-int LTR ERV1 -7240 516 422 2492 66 0 0 chrX 31110654 31110957 -131488973 + AluY SINE Alu 1 303 -8 1412 53 0 0 chrX 31110958 31111127 -131488803 + AluY SINE Alu 131 299 -12 5068 77 3 1 chrX 31112108 31112767 -131487163 + PABL_A LTR ERV1 1 660 0 3608 155 99 36 chrX 31112883 31113068 -131486862 + L1MB8 LINE L1 5303 5475 -703 738 186 16 0 chrX 31113068 31113197 -131486733 + FLAM_C SINE Alu 1 131 -2 3608 155 99 36 chrX 31113197 31113826 -131486104 + L1MB8 LINE L1 5475 6169 -9 183 80 0 0 chrX 31113845 31113870 -131486060 + (TG)n Simple_repeat Simple_repeat 1 25 0 35 0 0 0 chrX 31114520 31114555 -131485375 + AT_rich Low_complexity Low_complexity 1 35 0 324 204 11 43 chrX 31114651 31114744 -131485186 + L1MC4 LINE L1 6615 6704 -1338 608 201 11 4 chrX 31114745 31115027 -131484903 + (TA)n Simple_repeat Simple_repeat 1 284 0 379 136 26 84 chrX 31115040 31115367 -131484563 + (TA)n Simple_repeat Simple_repeat 1 308 0 208 111 41 76 chrX 31115385 31115557 -131484373 + (TA)n Simple_repeat Simple_repeat 1 166 0 202 82 47 47 chrX 31115578 31115663 -131484267 + (TA)n Simple_repeat Simple_repeat 2 86 0 338 143 69 12 chrX 31115686 31116020 -131483910 + (TA)n Simple_repeat Simple_repeat 1 353 0 1774 211 77 43 chrX 31116033 31116616 -131483314 - L1ME3 LINE L1 -42 6120 5518 2118 169 30 62 chrX 31116772 31117300 -131482630 + MLT2B1 LTR ERVL 3 513 -7 557 279 29 0 chrX 31117413 31117553 -131482377 + MIR SINE MIR 47 190 -72 633 167 28 7 chrX 31117588 31117732 -131482198 + CT-rich Low_complexity Low_complexity 2 148 0 889 251 20 85 chrX 31118459 31118503 -131481427 - L2 LINE L2 -132 3181 3136 1087 253 42 73 chrX 31118503 31119068 -131480862 + MLT1H LTR MaLR 1 548 -1 889 251 20 85 chrX 31119068 31119381 -131480549 - L2 LINE L2 -177 3136 2850 2271 112 0 0 chrX 31119381 31119676 -131480254 + AluSg SINE Alu 1 295 -15 889 251 20 85 chrX 31119676 31119719 -131480211 - L2 LINE L2 -463 2850 2806 1945 142 35 41 chrX 31119867 31119994 -131479936 - MLT1A1 LTR MaLR 0 365 239 2049 115 7 10 chrX 31119994 31120289 -131479641 + AluSq SINE Alu 1 294 -19 1945 142 35 41 chrX 31120289 31120528 -131479402 - MLT1A1 LTR MaLR -126 239 1 270 212 0 15 chrX 31120691 31120757 -131479173 + LTR67 LTR ERVL 493 557 0 619 304 103 18 chrX 31120896 31121120 -131478810 - MIR SINE MIR 0 262 20 22 35 0 0 chrX 31121361 31121390 -131478540 + AT_rich Low_complexity Low_complexity 1 29 0 753 160 19 51 chrX 31121394 31121550 -131478380 - FRAM SINE Alu -25 151 1 292 255 10 31 chrX 31121566 31121664 -131478266 - MIR SINE MIR -76 186 91 258 56 0 0 chrX 31122285 31122321 -131477609 + (CA)n Simple_repeat Simple_repeat 1 36 0 336 257 27 0 chrX 31122325 31122399 -131477531 + L2 LINE L2 3208 3283 -30 797 244 75 26 chrX 31122410 31122676 -131477254 - L2 LINE L2 -14 3299 3021 283 278 22 22 chrX 31122680 31122770 -131477160 - L2 LINE L2 -214 3058 2969 593 236 8 0 chrX 31122892 31123015 -131476915 - MLT1K LTR MaLR -325 263 140 190 250 62 62 chrX 31123219 31123283 -131476647 + L2 LINE L2 3246 3309 -4 935 116 7 0 chrX 31123759 31123906 -131476024 + L1MB7 LINE L1 5799 5946 -238 625 242 5 53 chrX 31123913 31124103 -131475827 - L2 LINE L2 -952 2362 2182 21 0 0 0 chrX 31124602 31124623 -131475307 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chrX 31124847 31124871 -131475059 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 541 228 35 0 chrX 31124881 31124995 -131474935 + MLT1K LTR MaLR 140 257 -331 6882 25 0 2 chrX 31125083 31125889 -131474041 + L1PA4 LINE L1 5349 6152 -3 345 317 21 111 chrX 31125933 31126267 -131473663 + L2 LINE L2 2969 3272 0 189 74 0 0 chrX 31126331 31126358 -131473572 + (CA)n Simple_repeat Simple_repeat 1 27 0 181 374 81 45 chrX 31129641 31129839 -131470091 + L2 LINE L2 3020 3224 -48 35 0 0 0 chrX 31130054 31130089 -131469841 + AT_rich Low_complexity Low_complexity 1 35 0 234 146 0 0 chrX 31130089 31130130 -131469800 - MLT1L LTR MaLR -17 598 558 1132 183 0 5 chrX 31130137 31130323 -131469607 + AluJo SINE Alu 126 310 -2 254 310 15 36 chrX 31130401 31130626 -131469304 - MLT1J LTR MaLR -223 392 110 253 283 11 43 chrX 31130567 31130659 -131469271 - LTR67 LTR ERVL -384 173 85 * 1650 85 31 0 chrX 31131550 31131773 -131468157 - MER30 DNA MER1_type 0 230 1 636 233 5 109 chrX 31131784 31131842 -131468088 + MER5B DNA MER1_type 1 63 -115 2348 109 0 0 chrX 31131842 31132153 -131467777 - AluSq SINE Alu -2 311 1 636 233 5 109 chrX 31132153 31132287 -131467643 + MER5B DNA MER1_type 63 173 -5 1978 166 43 8 chrX 31132287 31132660 -131467270 - MLT1B LTR MaLR 0 390 5 540 253 180 13 chrX 31132688 31132838 -131467092 - MER5A DNA MER1_type -6 183 9 974 205 5 5 chrX 31132859 31133044 -131466886 - MER5A DNA MER1_type -1 188 4 2161 115 3 20 chrX 31133146 31133450 -131466480 - AluSx SINE Alu -13 299 1 21 36 0 0 chrX 31133768 31133796 -131466134 + AT_rich Low_complexity Low_complexity 1 28 0 211 197 0 30 chrX 31133946 31134012 -131465918 + (TA)n Simple_repeat Simple_repeat 2 65 0 473 305 63 0 chrX 31134821 31134995 -131464935 - MIR SINE MIR 0 262 78 854 262 44 82 chrX 31134996 31135408 -131464522 + MLT1J LTR MaLR 1 396 -115 204 219 170 24 chrX 31135544 31135625 -131464305 + MIR SINE MIR 44 123 -85 452 291 54 79 chrX 31135798 31136114 -131463816 + LTR16C LTR ERVL 158 465 -26 716 278 67 28 chrX 31136248 31136608 -131463322 + L1ME2 LINE L1 5483 5856 -308 1863 194 48 19 chrX 31137502 31137976 -131461954 - Charlie4a DNA MER1_type -3 505 18 198 136 0 114 chrX 31138185 31138229 -131461701 - MIR SINE MIR 0 262 224 3424 141 110 10 chrX 31138868 31139577 -131460353 - L1MC3 LINE L1 -8 7777 6998 228 291 47 0 chrX 31140176 31140262 -131459668 - LTR67 LTR ERVL 0 557 468 764 268 93 56 chrX 31140272 31140754 -131459176 + MLT1H LTR MaLR 22 521 -28 277 287 35 43 chrX 31140788 31140903 -131459027 - LTR67 LTR ERVL -85 472 359 236 333 19 9 chrX 31141030 31141115 -131458815 - LTR67 LTR ERVL -357 200 112 240 59 0 0 chrX 31141115 31141149 -131458781 + (TG)n Simple_repeat Simple_repeat 2 35 0 236 333 19 9 chrX 31141149 31141168 -131458762 - LTR67 LTR ERVL -445 112 95 197 262 103 65 chrX 31142884 31142991 -131456939 + L2 LINE L2 3180 3290 -23 708 261 53 0 chrX 31143267 31143474 -131456456 - MIR SINE MIR -44 218 1 214 279 49 0 chrX 31143778 31143839 -131456091 + MIR SINE MIR 51 114 -148 213 154 0 0 chrX 31145723 31145762 -131454168 + (TA)n Simple_repeat Simple_repeat 1 39 0 569 304 69 10 chrX 31146409 31146613 -131453317 + MIR SINE MIR 25 240 -22 243 233 188 15 chrX 31146767 31146900 -131453030 + L2 LINE L2 3027 3182 -131 5466 132 32 41 chrX 31146931 31147788 -131452142 - L1MA4 LINE L1 -24 6276 5428 4064 88 2 15 chrX 31147788 31148376 -131451554 - L1PB1 LINE L1 0 6151 5572 5466 132 32 41 chrX 31148376 31148549 -131451381 - L1MA4 LINE L1 -872 5428 5255 523 270 54 20 chrX 31148554 31148702 -131451228 + L2 LINE L2 3159 3311 -2 2034 109 7 18 chrX 31149672 31149983 -131449947 + AluSc SINE Alu 1 308 0 261 276 0 0 chrX 31150362 31150438 -131449492 - MER69 DNA AcHobo -2 2524 2449 798 250 66 9 chrX 31150536 31150748 -131449182 + MER58A DNA MER1_type 1 224 0 1495 273 65 12 chrX 31152386 31152818 -131447112 + MLT1J LTR MaLR 8 462 -49 833 264 111 11 chrX 31153000 31153280 -131446650 - MLT1H LTR MaLR -236 313 6 645 305 147 0 chrX 31153608 31153880 -131446050 + L2 LINE L2 3002 3313 0 23 0 0 0 chrX 31153922 31153945 -131445985 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chrX 31154241 31154284 -131445646 + AT_rich Low_complexity Low_complexity 1 43 0 906 271 82 38 chrX 31154820 31155319 -131444611 - MLT1H1 LTR MaLR -2 553 43 6962 215 87 23 chrX 31155319 31156804 -131443126 + L1M4 LINE L1 10 1398 -5246 2267 110 3 0 chrX 31156804 31157112 -131442818 - AluSx SINE Alu -3 309 1 6962 215 87 23 chrX 31157112 31158407 -131441523 + L1M4 LINE L1 1398 2990 -3654 446 147 0 0 chrX 31158407 31158475 -131441455 - MLT1H1 LTR MaLR -527 68 1 2149 97 7 27 chrX 31158943 31159243 -131440687 + AluSx SINE Alu 6 299 -13 1998 213 45 19 chrX 31159433 31159897 -131440033 + MLT1E2 LTR MaLR 151 626 0 216 67 0 0 chrX 31160784 31160814 -131439116 + (TC)n Simple_repeat Simple_repeat 1 30 0 2356 89 6 10 chrX 31161154 31161467 -131438463 + AluSp SINE Alu 1 312 -1 477 293 60 67 chrX 31161917 31162007 -131437923 - MER102b DNA MER1_type -1090 338 249 2163 111 0 16 chrX 31162007 31162314 -131437616 - AluSx SINE Alu -10 302 1 477 293 60 67 chrX 31162314 31162537 -131437393 - MER102b DNA MER1_type -1179 249 27 714 54 0 0 chrX 31162584 31162676 -131437254 + AluY SINE Alu 207 298 -13 246 62 0 0 chrX 31162779 31162811 -131437119 + (TA)n Simple_repeat Simple_repeat 1 32 0 401 297 145 65 chrX 31163618 31163894 -131436036 + LTR16C LTR ERVL 3 300 -191 261 130 22 0 chrX 31163896 31163942 -131435988 - MER5A DNA MER1_type -142 47 1 1611 201 30 54 chrX 31165460 31165889 -131434041 - MER31B LTR ERV1 0 466 48 295 343 37 0 chrX 31165901 31166009 -131433921 + MIR SINE MIR 40 151 -57 531 252 8 0 chrX 31166988 31167111 -131432819 + LTR16C LTR ERVL 364 487 -4 1972 107 66 38 chrX 31169429 31169794 -131430136 + THE1C LTR MaLR 1 375 0 384 303 118 7 chrX 31169891 31170043 -131429887 + MIR SINE MIR 24 192 -70 22 0 0 0 chrX 31170539 31170561 -131429369 + AT_rich Low_complexity Low_complexity 1 22 0 36 77 0 0 chrX 31170579 31170657 -131429273 + AT_rich Low_complexity Low_complexity 1 78 0 287 137 0 0 chrX 31170711 31170762 -131429168 - L1MA9 LINE L1 -39 6273 6223 1797 98 94 7 chrX 31170772 31171079 -131428851 - L1MA8 LINE L1 -279 6012 5679 586 287 21 50 chrX 31171295 31171574 -131428356 + MLT1L LTR MaLR 222 492 -123 266 262 115 107 chrX 31173593 31173845 -131426085 - L2 LINE L2 0 3272 3019 * 604 336 74 44 chrX 31173839 31174336 -131425594 - L2 LINE L2 -407 2907 2396 293 273 0 0 chrX 31174341 31174429 -131425501 - MLT1H LTR MaLR 0 549 462 394 248 16 25 chrX 31174642 31174763 -131425167 - MLT1H LTR MaLR -390 159 40 353 295 119 81 chrX 31174839 31175110 -131424820 - L2 LINE L2 -621 2693 2434 402 190 36 73 chrX 31175110 31175247 -131424683 + MER94 DNA DNA 2 133 -1 353 295 119 81 chrX 31175247 31175569 -131424361 - L2 LINE L2 -880 2434 2077 479 344 60 51 chrX 31175572 31175924 -131424006 - MLT1K LTR MaLR -51 537 183 222 366 101 39 chrX 31175925 31176280 -131423650 - L2 LINE L2 -1419 1895 1519 21 95 0 0 chrX 31177359 31177422 -131422508 + AT_rich Low_complexity Low_complexity 1 63 0 4966 176 24 5 chrX 31178460 31180060 -131419870 - L1MB1 LINE L1 0 6404 4774 839 210 111 72 chrX 31180061 31180107 -131419823 - MSTC LTR MaLR -2 426 383 2220 119 0 0 chrX 31180107 31180409 -131419521 + AluSx SINE Alu 3 304 -8 839 210 111 72 chrX 31180409 31180743 -131419187 - MSTC LTR MaLR -45 383 1 5829 241 60 62 chrX 31180743 31181388 -131418542 - MSTD-int LTR MaLR 0 1735 1090 3294 159 19 3 chrX 31181388 31181959 -131417971 - LTR22 LTR ERVK 0 580 1 5829 241 60 62 chrX 31181959 31182945 -131416985 - MSTD-int LTR MaLR -645 1090 104 2225 44 44 4 chrX 31182945 31183262 -131416668 - AluY SINE Alu 0 328 1 5829 241 60 62 chrX 31183262 31183365 -131416565 - MSTD-int LTR MaLR -1631 104 2 917 212 28 4 chrX 31183374 31183579 -131416351 - MSTD LTR MaLR -6 390 197 6099 34 1 1 chrX 31184255 31184983 -131414947 - L1PA5 LINE L1 -3 6151 5424 593 194 36 61 chrX 31184993 31185158 -131414772 - MSTD LTR MaLR -213 161 1 8304 217 70 57 chrX 31185158 31185452 -131414478 - L1MB1 LINE L1 -1581 4801 4512 2183 105 3 13 chrX 31185452 31185765 -131414165 - AluSg SINE Alu 0 310 1 8304 217 70 57 chrX 31185765 31186190 -131413740 - L1MB1 LINE L1 -1870 4512 4094 2091 187 0 3 chrX 31186190 31186553 -131413377 + MLT1A1 LTR MaLR 1 362 -3 8304 217 70 57 chrX 31186553 31188604 -131411326 - L1MB1 LINE L1 -2288 4094 2071 2510 84 0 0 chrX 31188604 31188914 -131411016 - AluSg SINE Alu 0 310 1 8304 217 70 57 chrX 31188914 31189226 -131410704 - L1MB1 LINE L1 -4311 2071 1765 2252 112 0 0 chrX 31189226 31189530 -131410400 - AluSx SINE Alu -8 304 1 8304 217 70 57 chrX 31189530 31190002 -131409928 - L1MB1 LINE L1 -4617 1765 1301 435 216 0 0 chrX 31190002 31190076 -131409854 - AluJ/FLAM SINE Alu -235 77 4 8304 217 70 57 chrX 31190076 31190426 -131409504 - L1MB1 LINE L1 -5081 1301 806 1170 118 67 15 chrX 31190427 31190622 -131409308 - MER4E-int LTR ERV1 -2106 4652 4448 * 3740 150 63 7 chrX 31190620 31191235 -131408695 - MER4E-int LTR ERV1 -2673 4085 3436 * 7930 117 78 34 chrX 31191233 31191823 -131408107 - MER4E-int LTR ERV1 -3664 3094 2531 1968 125 7 3 chrX 31191823 31192112 -131407818 - AluSx SINE Alu -22 290 1 7930 117 78 34 chrX 31192112 31193602 -131406328 - MER4E-int LTR ERV1 -4227 2531 1444 6482 111 91 25 chrX 31193613 31193695 -131406235 - MER4E-int LTR ERV1 -5590 1168 1093 321 26 0 0 chrX 31193695 31193733 -131406197 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6482 111 91 25 chrX 31193733 31194745 -131405185 - MER4E-int LTR ERV1 -5665 1093 1 5635 71 12 3 chrX 31194745 31195504 -131404426 - MER4E LTR ERV1 0 766 1 467 243 86 33 chrX 31195536 31195746 -131404184 + L1M4 LINE L1 22 242 -6300 1719 99 0 36 chrX 31195816 31196068 -131403862 - AluSx SINE Alu -16 296 54 1445 156 11 0 chrX 31196097 31196360 -131403570 + L1MA9 LINE L1 5861 6126 -186 1875 197 29 2 chrX 31196362 31196774 -131403156 + L1MB5 LINE L1 5743 6165 -9 487 175 70 0 chrX 31196801 31196915 -131403015 + L1MC4 LINE L1 7920 8041 -1 1104 289 18 6 chrX 31197146 31197485 -131402445 - LTR16C LTR ERVL 0 491 149 237 299 14 89 chrX 31197575 31197789 -131402141 - L2 LINE L2 -1914 1400 1203 183 308 47 87 chrX 31197858 31198030 -131401900 - L3 LINE CR1 -606 971 807 214 200 0 0 chrX 31198250 31198290 -131401640 + L2 LINE L2 3274 3313 0 1723 125 66 42 chrX 31198867 31199156 -131400774 + AluSx SINE Alu 1 296 -16 235 306 108 101 chrX 31199244 31199809 -131400121 - L2 LINE L2 0 3272 2688 1106 220 155 19 chrX 31199809 31199879 -131400051 - LTR52 LTR ERVL -3 418 359 423 0 0 0 chrX 31199879 31199926 -131400004 + (CA)n Simple_repeat Simple_repeat 1 47 0 1106 220 155 19 chrX 31199926 31200223 -131399707 - LTR52 LTR ERVL -62 359 1 235 306 108 101 chrX 31200223 31200596 -131399334 - L2 LINE L2 -584 2688 2319 257 250 103 15 chrX 31200768 31200904 -131399026 - L1ME4a LINE L1 0 6121 5974 29 70 0 0 chrX 31201112 31201169 -131398761 + AT_rich Low_complexity Low_complexity 1 57 0 2881 90 47 9 chrX 31201242 31201686 -131398244 - MER4C LTR ERV1 -4 461 1 2287 39 21 0 chrX 31201990 31202274 -131397656 - L1PA5 LINE L1 0 6154 5865 5067 253 53 21 chrX 31202644 31203481 -131396449 + L1M4b LINE L1 96 905 -5950 1929 143 34 3 chrX 31203481 31203775 -131396155 - AluJb SINE Alu -9 303 1 5067 253 53 21 chrX 31203775 31204608 -131395322 + L1M4b LINE L1 905 1800 -5055 9977 223 44 29 chrX 31204879 31208386 -131391544 + L1M4b LINE L1 2476 5997 -960 1460 187 76 38 chrX 31208399 31208795 -131391135 - LTR2B LTR ERV1 -46 444 34 1782 47 21 0 chrX 31208816 31209049 -131390881 - Harlequin LTR ERV1 0 6896 6659 958 35 0 0 chrX 31209049 31209163 -131390767 - L1PA5 LINE L1 -3 6151 6038 513 178 108 45 chrX 31209428 31209585 -131390345 + MER20 DNA MER1_type 53 219 0 297 391 0 27 chrX 31209629 31209739 -131390191 + L2 LINE L2 3123 3229 -43 382 337 21 11 chrX 31209832 31210019 -131389911 + LTR16C LTR ERVL 1 189 -302 431 178 10 30 chrX 31210050 31210151 -131389779 + LTR16C LTR ERVL 326 424 -67 1650 244 56 10 chrX 31210151 31210634 -131389296 + MLT1D LTR MaLR 1 505 0 2632 215 22 36 chrX 31210637 31211303 -131388627 + MLT1D-int LTR MaLR 4 660 -711 862 219 11 0 chrX 31211376 31211559 -131388371 + MLT1D-int LTR MaLR 699 883 -488 469 256 156 43 chrX 31211635 31211846 -131388084 + MLT1D-int LTR MaLR 871 1105 -266 1928 80 42 42 chrX 31212064 31212350 -131387580 - AluY SINE Alu -25 286 1 555 206 139 28 chrX 31212379 31212723 -131387207 - LTR37A LTR ERV1 -3 423 10 381 262 44 63 chrX 31214551 31214808 -131385122 + MIR SINE MIR 5 253 -9 288 268 36 27 chrX 31215076 31215188 -131384742 - MER31-int LTR ERV1 -3795 1141 1029 180 0 0 0 chrX 31215416 31215436 -131384494 + (CAA)n Simple_repeat Simple_repeat 2 21 0 391 256 66 30 chrX 31215664 31216004 -131383926 - LTR37A LTR ERV1 -3 423 3 401 155 0 21 chrX 31216861 31216958 -131382972 + GA-rich Low_complexity Low_complexity 2 96 0 434 298 117 24 chrX 31219078 31219326 -131380604 + Charlie8 DNA MER1_type 4 274 -2143 6795 211 45 9 chrX 31219351 31220963 -131378967 + MER52A LTR ERV1 9 1755 0 298 353 17 0 chrX 31221319 31221438 -131378492 - MER5C DNA MER1_type -203 121 1 187 270 63 16 chrX 31221828 31221891 -131378039 + MIR3 SINE MIR 116 181 -27 252 270 24 3 chrX 31221970 31222057 -131377873 - MIR SINE MIR -54 154 62 4252 101 21 48 chrX 31222531 31222574 -131377356 - L1MA3 LINE L1 -8 6297 6254 4668 124 28 27 chrX 31222574 31223357 -131376573 - LTR1 LTR ERV1 -1 784 1 4252 101 21 48 chrX 31223357 31224038 -131375892 - L1MA3 LINE L1 -51 6254 5593 7455 30 0 3 chrX 31224050 31225525 -131374405 - L1PA4 LINE L1 -7 6148 4675 3151 23 2 0 chrX 31225525 31225918 -131374012 + L1PA4 LINE L1 4261 4654 -1492 2316 150 1 2 chrX 31225909 31226516 -131373414 - L1MA3 LINE L1 -690 5612 5006 * 4778 109 16 3 chrX 31226516 31227253 -131372677 + L1MA2 LINE L1 5547 6301 -3 631 267 58 53 chrX 31227425 31227856 -131372074 + L1ME LINE L1 556 988 -5082 696 269 94 24 chrX 31228207 31228419 -131371511 + MIR SINE MIR 6 232 -30 446 272 121 0 chrX 31231005 31231178 -131368752 - L2 LINE L2 0 3313 3120 325 362 104 24 chrX 31231183 31231769 -131368161 + L2 LINE L2 1932 2564 -750 1028 257 12 4 chrX 31232183 31232428 -131367502 + MIR SINE MIR 5 251 -11 543 262 120 71 chrX 31233012 31233237 -131366693 - MIR SINE MIR -21 241 6 2507 44 0 10 chrX 31233528 31233826 -131366104 + AluY SINE Alu 1 295 -16 876 247 30 49 chrX 31236455 31236631 -131363299 + MIR SINE MIR 1 172 -90 3696 101 35 29 chrX 31236631 31237227 -131362703 - MER4A LTR ERV1 0 600 1 876 247 30 49 chrX 31237227 31237317 -131362613 + MIR SINE MIR 172 262 0 628 313 29 10 chrX 31237518 31237726 -131362204 - MIR SINE MIR -31 231 20 184 286 78 13 chrX 31237731 31237808 -131362122 - MER5B DNA MER1_type -6 172 91 618 148 14 49 chrX 31237810 31237952 -131361978 - L1MB7 LINE L1 0 6184 6048 188 286 89 0 chrX 31238132 31238188 -131361742 - MER5A DNA MER1_type -1 188 128 856 235 67 4 chrX 31238226 31238494 -131361436 + MER58D DNA MER1_type 101 385 -1 207 0 0 0 chrX 31239252 31239275 -131360655 + (TTG)n Simple_repeat Simple_repeat 2 24 0 300 269 69 62 chrX 31239491 31239636 -131360294 + ERVL LTR ERVL 1074 1219 -4545 209 365 56 60 chrX 31239657 31239751 -131360179 + L2 LINE L2 2012 2105 -1209 4706 71 16 61 chrX 31239751 31240442 -131359488 - PABL_A LTR ERV1 0 660 1 209 365 56 60 chrX 31240442 31240599 -131359331 + L2 LINE L2 2105 2262 -1052 420 305 17 8 chrX 31240804 31240922 -131359008 + MER5A DNA MER1_type 71 189 0 304 314 96 26 chrX 31240922 31241144 -131358786 + L2 LINE L2 2431 2668 -646 1596 164 3 21 chrX 31241787 31242113 -131357817 - AluSx SINE Alu 0 321 1 414 100 0 0 chrX 31242569 31242629 -131357301 + (TA)n Simple_repeat Simple_repeat 2 61 0 245 274 11 21 chrX 31242635 31242730 -131357200 - L1ME4a LINE L1 -193 5928 5835 482 221 27 87 chrX 31242947 31243096 -131356834 - MIR SINE MIR -13 249 110 347 294 71 16 chrX 31243570 31243696 -131356234 - L2 LINE L2 0 3272 3140 706 303 66 38 chrX 31243750 31244112 -131355818 + MLT1I LTR MaLR 6 393 -16 1125 231 87 0 chrX 31244112 31244410 -131355520 - MER5C DNA MER1_type 0 324 1 2745 156 41 6 chrX 31244476 31244962 -131354968 - MLT1D LTR MaLR -2 503 1 270 324 166 32 chrX 31245038 31245285 -131354645 - L2 LINE L2 -337 2977 2698 633 62 0 0 chrX 31246079 31246159 -131353771 - MADE1 DNA Mariner 0 80 1 367 175 113 10 chrX 31246180 31246277 -131353653 - MER103 DNA DNA -48 118 12 2410 96 13 40 chrX 31246292 31246666 -131353264 + THE1B LTR MaLR 1 364 0 678 231 138 0 chrX 31246749 31246909 -131353021 + MIR SINE MIR 12 193 -69 3941 88 32 0 chrX 31248583 31249120 -131350810 - MER41A LTR ERV1 0 554 1 11705 101 5 11 chrX 31249120 31249994 -131349936 - MER41A-int LTR ERV1 -2 5944 5083 2184 117 7 7 chrX 31249994 31250302 -131349628 - AluSq SINE Alu -5 308 1 11705 101 5 11 chrX 31250302 31251089 -131348841 - MER41A-int LTR ERV1 -863 5083 4293 425 38 0 0 chrX 31251092 31251145 -131348785 - HUERS-P1 LTR ERV1 -1887 4376 4324 * 9063 137 84 14 chrX 31251127 31253390 -131346540 - HUERS-P1 LTR ERV1 -2189 3757 1273 224 230 23 23 chrX 31254791 31254878 -131345052 + (TA)n Simple_repeat Simple_repeat 1 87 0 1722 148 28 24 chrX 31254912 31255203 -131344727 - AluJo SINE Alu -20 292 1 1044 223 73 0 chrX 31256451 31256657 -131343273 + MIR SINE MIR 42 262 0 1868 38 0 0 chrX 31257573 31257785 -131342145 + AluY SINE Alu 86 297 -14 2295 84 0 0 chrX 31257793 31258080 -131341850 + AluSc SINE Alu 1 287 -22 2313 83 0 0 chrX 31258202 31258490 -131341440 + AluSx SINE Alu 1 288 -24 22 35 0 0 chrX 31258490 31258519 -131341411 + AT_rich Low_complexity Low_complexity 1 29 0 673 325 41 4 chrX 31258868 31259114 -131340816 + MIR SINE MIR 7 261 -1 1212 217 81 4 chrX 31259322 31259594 -131340336 + LTR16A1 LTR ERVL 165 457 0 432 0 0 0 chrX 31259967 31260015 -131339915 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1756 225 121 5 chrX 31260015 31260428 -131339502 - MLT2B1 LTR ERVL -59 461 1 33 56 0 0 chrX 31262012 31262066 -131337864 + AT_rich Low_complexity Low_complexity 1 54 0 2369 71 3 0 chrX 31262072 31262366 -131337564 + AluY SINE Alu 1 295 -16 5436 93 25 1 chrX 31262368 31263155 -131336775 - L1MA1 LINE L1 0 6302 5497 846 174 0 0 chrX 31264010 31264182 -131335748 - L1MA4 LINE L1 -2 6298 6127 228 241 35 14 chrX 31264250 31264391 -131335539 + (TA)n Simple_repeat Simple_repeat 1 144 0 871 240 6 0 chrX 31264439 31264610 -131335320 + MER8 DNA MER2_type 10 181 -58 372 164 0 0 chrX 31264653 31264708 -131335222 - Tigger2 DNA MER2_type -2658 60 6 323 236 11 71 chrX 31265409 31265591 -131334339 - L1ME4a LINE L1 -21 6100 5930 377 219 124 39 chrX 31265743 31265824 -131334106 - L1ME4a LINE L1 -75 6046 5973 441 95 0 0 chrX 31265824 31265887 -131334043 + (TA)n Simple_repeat Simple_repeat 1 63 0 377 219 124 39 chrX 31265887 31266038 -131333892 - L1ME4a LINE L1 -148 5973 5794 448 290 69 0 chrX 31267200 31267345 -131332585 - LTR16C LTR ERVL 0 491 337 216 0 0 0 chrX 31267640 31267664 -131332266 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 428 293 95 14 chrX 31268265 31268412 -131331518 + MIR SINE MIR 20 178 -84 2487 106 28 14 chrX 31268432 31268791 -131331139 - THE1B LTR MaLR 0 364 1 11519 87 20 8 chrX 31268791 31270083 -131329847 - THE1B-int LTR MaLR 0 1580 265 2418 81 0 0 chrX 31270083 31270380 -131329550 + AluY SINE Alu 1 297 -14 11519 87 20 8 chrX 31270380 31270649 -131329281 - THE1B-int LTR MaLR -1315 265 1 2101 121 53 36 chrX 31270651 31271007 -131328923 - THE1B LTR MaLR -2 362 1 1186 276 90 28 chrX 31271506 31271963 -131327967 - MLT1J LTR MaLR -15 496 12 637 248 41 89 chrX 31271980 31272226 -131327704 - MIR SINE MIR -26 236 3 185 343 0 69 chrX 31272720 31272822 -131327108 - L2 LINE L2 -231 3082 2988 1302 263 68 11 chrX 31272845 31273226 -131326704 - MLT1I LTR MaLR -2 407 5 710 341 58 30 chrX 31273247 31273646 -131326284 - L2 LINE L2 -337 2977 2568 24 0 0 0 chrX 31273680 31273704 -131326226 + AT_rich Low_complexity Low_complexity 1 24 0 215 240 20 0 chrX 31273786 31273836 -131326094 + CT-rich Low_complexity Low_complexity 3 53 0 316 357 35 0 chrX 31274180 31274323 -131325607 - L2 LINE L2 -2456 858 711 337 119 0 51 chrX 31274376 31274435 -131325495 - MLT1D LTR MaLR 0 505 450 264 280 68 45 chrX 31274483 31274615 -131325315 + L2 LINE L2 3179 3313 0 758 273 0 6 chrX 31275092 31275264 -131324666 + MER5B DNA MER1_type 1 171 -7 545 219 180 8 chrX 31275296 31275424 -131324506 - MER5A DNA MER1_type -30 159 10 658 295 45 5 chrX 31275486 31275686 -131324244 - MIR SINE MIR -29 233 26 293 143 0 0 chrX 31275754 31275796 -131324134 + 5S rRNA rRNA 1 42 -79 240 35 0 0 chrX 31276762 31276791 -131323139 + (TG)n Simple_repeat Simple_repeat 1 29 0 300 70 0 0 chrX 31276791 31276834 -131323096 + (GA)n Simple_repeat Simple_repeat 2 44 0 1587 158 55 4 chrX 31276922 31277195 -131322735 - AluJo SINE Alu -25 287 1 7205 123 10 35 chrX 31278005 31279776 -131320154 - L1MA3 LINE L1 -6 6299 4562 752 293 9 24 chrX 31279984 31280322 -131319608 - L1M4 LINE L1 -852 5294 4962 379 318 5 14 chrX 31280341 31280558 -131319372 - L1MDa LINE L1 -3459 3081 2867 * 1073 329 61 11 chrX 31280552 31281526 -131318404 - L1MEc LINE L1 -4579 1817 796 222 37 0 0 chrX 31281874 31281901 -131318029 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 244 247 104 0 chrX 31282460 31282537 -131317393 + MLT1J2 LTR MaLR 366 450 0 597 238 88 19 chrX 31282565 31282725 -131317205 + L2 LINE L2 3143 3313 0 180 234 0 0 chrX 31282727 31282774 -131317156 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 2169 136 0 7 chrX 31284139 31284448 -131315482 - AluSx SINE Alu -5 307 1 2242 255 17 25 chrX 31284741 31285345 -131314585 + MER90 LTR ERV1 1 599 -15 398 245 98 8 chrX 31285808 31286042 -131313888 - L1ME3A LINE L1 -214 5950 5686 222 37 0 0 chrX 31286246 31286273 -131313657 + (TG)n Simple_repeat Simple_repeat 2 28 0 269 286 13 0 chrX 31286280 31286357 -131313573 - MER112 DNA MER1_type -175 85 8 874 329 8 0 chrX 31286376 31286747 -131313183 - L1ME3A LINE L1 -521 5643 5270 581 237 29 6 chrX 31286745 31286918 -131313012 - L1MDa LINE L1 -3749 2791 2615 * 212 204 29 48 chrX 31286931 31287034 -131312896 + (TA)n Simple_repeat Simple_repeat 2 102 0 672 270 75 15 chrX 31287528 31287861 -131312069 - L1MDa LINE L1 -4540 2000 1648 404 283 10 0 chrX 31287893 31287992 -131311938 + L2 LINE L2 3203 3302 -11 2260 107 0 0 chrX 31287996 31288287 -131311643 + AluSx SINE Alu 1 291 -21 589 311 47 0 chrX 31288999 31289192 -131310738 + MIR SINE MIR 55 256 -6 1449 177 17 100 chrX 31289694 31289857 -131310073 - MER58B DNA MER1_type -2095 325 205 5498 109 35 9 chrX 31289857 31291106 -131308824 + L1PA16 LINE L1 4882 6157 -9 1449 177 17 100 chrX 31291106 31291292 -131308638 - MER58B DNA MER1_type -2215 205 5 1743 218 70 53 chrX 31291394 31291922 -131308008 - MLT1E2 LTR MaLR -2 624 88 356 277 34 20 chrX 31291818 31291966 -131307964 - MLT2C1 LTR ERVL -200 197 48 * 309 149 253 23 chrX 31293079 31293166 -131306764 - L2 LINE L2 0 3313 3207 233 308 62 39 chrX 31293236 31293366 -131306564 - L2 LINE L2 -2 3270 3138 199 365 71 34 chrX 31293513 31293751 -131306179 + L2 LINE L2 2474 2720 -594 874 248 62 29 chrX 31293847 31294089 -131305841 + MIR SINE MIR 13 262 0 419 236 36 0 chrX 31294803 31294913 -131305017 + MER20B DNA MER1_type 35 148 -635 715 192 0 23 chrX 31296597 31296727 -131303203 - FLAM_A SINE Alu -4 129 3 195 341 70 31 chrX 31297069 31297084 -131302846 + L2 LINE L2 3137 3150 -122 300 53 0 0 chrX 31297084 31297122 -131302808 + (CA)n Simple_repeat Simple_repeat 2 39 0 195 341 70 31 chrX 31297122 31297235 -131302695 + L2 LINE L2 3150 3270 -2 284 260 78 0 chrX 31297263 31297340 -131302590 - LTR50 LTR ERVL -698 97 15 428 300 17 0 chrX 31298223 31298343 -131301587 - L2 LINE L2 -2 3311 3190 30 0 0 0 chrX 31299244 31299274 -131300656 + AT_rich Low_complexity Low_complexity 1 30 0 977 177 13 13 chrX 31300062 31300220 -131299710 + FRAM SINE Alu 1 155 -21 2514 72 0 0 chrX 31300432 31300738 -131299192 - AluY SINE Alu -5 306 1 782 258 43 85 chrX 31301760 31302049 -131297881 - LTR16A1 LTR ERVL -3 454 190 680 150 83 33 chrX 31302049 31302229 -131297701 + MER53 DNA DNA 1 189 0 782 258 43 85 chrX 31302229 31302400 -131297530 - LTR16A1 LTR ERVL -267 190 13 1520 285 42 11 chrX 31303694 31304167 -131295763 - LTR16C LTR ERVL -3 488 1 368 348 62 14 chrX 31304832 31305108 -131294822 - L2 LINE L2 -180 3092 2804 327 25 0 0 chrX 31305953 31305993 -131293937 + (TG)n Simple_repeat Simple_repeat 1 40 0 4569 149 95 28 chrX 31306004 31306875 -131293055 + MER21A LTR ERV1 1 930 -1 1603 200 30 0 chrX 31306886 31307216 -131292714 - MER58B DNA MER1_type 0 341 2 783 229 11 0 chrX 31307402 31307577 -131292353 - MER5B DNA MER1_type 0 178 2 2325 175 43 7 chrX 31308094 31308540 -131291390 - LTR32 LTR ERVL 0 471 10 215 216 0 39 chrX 31310066 31310117 -131289813 + (TATG)n Simple_repeat Simple_repeat 1 49 0 185 314 32 40 chrX 31310120 31310244 -131289686 + MIR SINE MIR 101 223 -39 251 299 65 19 chrX 31310932 31311039 -131288891 - L2 LINE L2 -15 3298 3187 1528 141 188 16 chrX 31311792 31312111 -131287819 - THE1C LTR MaLR -1 374 1 221 217 0 0 chrX 31312791 31312837 -131287093 - L2 LINE L2 -5 3267 3222 281 221 52 39 chrX 31312842 31312919 -131287011 - L2 LINE L2 -292 3021 2944 1204 297 59 0 chrX 31313038 31313428 -131286502 - L2 LINE L2 -362 2952 2540 2348 190 17 70 chrX 31314386 31314971 -131284959 - MLT2B3 LTR ERVL 0 554 1 247 349 0 0 chrX 31318831 31318914 -131281016 + MIR3 SINE MIR 118 200 -8 396 299 71 63 chrX 31319072 31319459 -131280471 + L1MB7 LINE L1 3497 3883 -2263 3903 208 54 18 chrX 31319459 31321349 -131278581 + L1MB7 LINE L1 4212 6173 -11 266 227 34 11 chrX 31321385 31321473 -131278457 + L1MC5 LINE L1 7830 7919 -42 3709 170 20 5 chrX 31321634 31322374 -131277556 - L1 LINE L1 -1868 4278 3528 1309 241 36 87 chrX 31322427 31322448 -131277482 + L1ME3 LINE L1 5288 5309 -853 1056 171 78 0 chrX 31322448 31322641 -131277289 - MER6B DNA MER2_type 0 210 3 1309 241 36 87 chrX 31322641 31323319 -131276611 + L1ME3 LINE L1 5309 5951 -211 300 200 0 0 chrX 31323808 31323873 -131276057 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 220 291 114 13 chrX 31324199 31324278 -131275652 - MIR SINE MIR -156 106 20 326 330 53 34 chrX 31324820 31325084 -131274846 + L2 LINE L2 2538 2806 -508 191 283 0 0 chrX 31325813 31325859 -131274071 + MIR SINE MIR 108 153 -55 181 306 20 0 chrX 31325878 31325927 -131274003 + MER5A DNA MER1_type 4 53 -136 2461 229 22 21 chrX 31325927 31326509 -131273421 - MER119 DNA MER1_type 0 583 1 224 239 0 0 chrX 31326510 31326556 -131273374 + MER5A DNA MER1_type 47 92 -97 384 188 12 0 chrX 31327027 31327107 -131272823 - Tigger7 DNA MER2_type 0 2487 2407 1374 183 14 46 chrX 31327124 31327408 -131272522 - Tigger7 DNA MER2_type -2080 407 133 1752 138 3 21 chrX 31327408 31327764 -131272166 - MER4A LTR ERV1 0 664 257 473 155 21 10 chrX 31327760 31327857 -131272073 - MER4A LTR ERV1 -566 98 1 * 863 151 14 0 chrX 31327857 31327991 -131271939 - Tigger7 DNA MER2_type -568 137 2 1960 165 114 7 chrX 31329412 31329881 -131270049 - MER68 LTR ERV1 0 562 1 697 278 34 19 chrX 31330388 31330593 -131269337 - MIR SINE MIR -51 211 4 21 36 0 0 chrX 31332883 31332911 -131267019 + AT_rich Low_complexity Low_complexity 1 28 0 545 333 63 0 chrX 31333368 31333605 -131266325 + MIR SINE MIR 10 261 -1 272 299 106 69 chrX 31333607 31334012 -131265918 - MLT1K LTR MaLR -1 587 168 464 298 111 15 chrX 31334458 31334720 -131265210 + LTR16A1 LTR ERVL 163 449 -8 343 328 40 33 chrX 31335918 31336247 -131263683 + LTR16C LTR ERVL 72 402 -89 3524 141 17 33 chrX 31336726 31337381 -131262549 - L1MA8 LINE L1 -5 6286 5622 2819 10 0 0 chrX 31337381 31337689 -131262241 + AluY SINE Alu 1 308 -3 3524 141 17 33 chrX 31337689 31338515 -131261415 - L1MA8 LINE L1 -669 5622 4748 276 290 114 38 chrX 31339123 31339254 -131260676 + L2 LINE L2 3132 3272 0 990 250 97 77 chrX 31339678 31340222 -131259708 - MLT1H1 LTR MaLR 0 555 1 656 204 7 0 chrX 31340792 31340934 -131258996 - L1MD1 LINE L1 -2 6240 6098 1080 180 0 0 chrX 31340934 31341101 -131258829 - FRAM SINE Alu -13 163 1 420 143 0 0 chrX 31341101 31341171 -131258759 + (TA)n Simple_repeat Simple_repeat 2 71 0 889 120 0 0 chrX 31341175 31341292 -131258638 - FLAM_C SINE Alu -26 117 1 3628 154 21 24 chrX 31341292 31342005 -131257925 - L1MD2 LINE L1 -138 6221 5511 2594 131 32 0 chrX 31343084 31343495 -131256435 - MSTA LTR MaLR 0 428 5 355 227 282 9 chrX 31343566 31343676 -131256254 + MIR SINE MIR 83 222 -40 207 237 165 10 chrX 31345051 31345148 -131254782 - L2 LINE L2 -1 3312 3201 1999 110 55 14 chrX 31345316 31345607 -131254323 - AluSq SINE Alu -10 303 1 959 209 94 44 chrX 31346097 31346538 -131253392 - MLT1J LTR MaLR 0 511 5 180 322 111 0 chrX 31346649 31346739 -131253191 + L2 LINE L2 3180 3279 -34 870 340 21 21 chrX 31346763 31347098 -131252832 - LTR16C LTR ERVL -59 432 98 366 326 39 0 chrX 31349460 31349589 -131250341 + MER94 DNA DNA 1 134 0 240 217 0 0 chrX 31350108 31350154 -131249776 - MLT1I LTR MaLR -266 143 98 428 330 85 6 chrX 31350294 31350470 -131249460 - MIR3 SINE MIR 0 208 19 38 39 0 0 chrX 31351087 31351139 -131248791 + AT_rich Low_complexity Low_complexity 1 52 0 346 236 22 0 chrX 31351429 31351518 -131248412 - L1MC4a LINE L1 -1959 5849 5759 306 306 149 0 chrX 31351635 31351769 -131248161 + L1MC/D LINE L1 5618 5771 -2037 1166 321 79 25 chrX 31351770 31352402 -131247528 + L2 LINE L2 2030 2695 -619 237 289 53 18 chrX 31352415 31352529 -131247401 - L1MC4 LINE L1 -3 8039 7922 530 308 147 42 chrX 31352558 31353076 -131246854 + L2 LINE L2 2729 3312 -1 328 274 27 0 chrX 31353088 31353200 -131246730 - MIR3 SINE MIR -6 202 87 1353 158 22 0 chrX 31353244 31353472 -131246458 + L1MA6 LINE L1 6068 6300 0 2482 50 0 17 chrX 31354020 31354317 -131245613 - AluY SINE Alu -19 292 1 257 284 88 54 chrX 31354681 31354829 -131245101 + MER5A DNA MER1_type 37 189 0 369 375 31 5 chrX 31354960 31355154 -131244776 + MIR SINE MIR 15 212 -50 220 175 0 35 chrX 31356050 31356107 -131243823 + T-rich Low_complexity Low_complexity 5 59 0 2675 139 85 4 chrX 31357499 31357980 -131241950 - L1MC2 LINE L1 -11 6333 5814 399 123 55 0 chrX 31357980 31358049 -131241881 - L1MB1 LINE L1 0 6168 6092 260 102 20 0 chrX 31358100 31358149 -131241781 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 2000 108 11 4 chrX 31358417 31358694 -131241236 - L1PA15 LINE L1 -4 6161 5883 222 176 0 0 chrX 31358970 31359004 -131240926 - MIR SINE MIR -11 251 218 282 175 35 0 chrX 31359050 31359107 -131240823 - MIR SINE MIR -141 121 63 424 253 0 0 chrX 31359218 31359317 -131240613 + MER5A DNA MER1_type 8 106 -83 459 0 0 0 chrX 31359549 31359600 -131240330 + (TG)n Simple_repeat Simple_repeat 2 52 0 625 301 29 6 chrX 31359986 31360159 -131239771 + MIR3 SINE MIR 21 197 -11 356 188 0 14 chrX 31360192 31360261 -131239669 - HsTC2 DNA Tc2 -20 1878 1811 1629 280 72 14 chrX 31360281 31360770 -131239160 + LTR33 LTR ERVL 5 521 0 284 247 26 39 chrX 31361408 31361485 -131238445 - MER5C DNA MER1_type -248 76 1 837 219 6 0 chrX 31362254 31362423 -131237507 + MER5B DNA MER1_type 1 170 -8 1267 80 6 0 chrX 31362675 31362837 -131237093 - L1PA10 LINE L1 -1 6167 6005 717 214 316 19 chrX 31363154 31363420 -131236510 + Charlie1a DNA MER1_type 11 355 -1100 4592 177 55 3 chrX 31363451 31363997 -131235933 + Charlie1a DNA MER1_type 483 1092 -1669 330 115 0 0 chrX 31363997 31364049 -131235881 + (TG)n Simple_repeat Simple_repeat 1 52 0 4592 177 55 3 chrX 31364049 31364374 -131235556 + Charlie1a DNA MER1_type 1092 1399 -56 756 295 39 50 chrX 31364692 31365153 -131234777 - L1ME LINE L1 -5597 473 18 1774 183 0 10 chrX 31365398 31365699 -131234231 - AluJo SINE Alu -14 298 1 753 125 0 0 chrX 31365715 31365827 -131234103 + L1M2 LINE L1 5658 5769 -531 405 0 0 0 chrX 31366326 31366371 -131233559 + (CA)n Simple_repeat Simple_repeat 2 46 0 2611 160 11 40 chrX 31366392 31366837 -131233093 - MSTB1 LTR MaLR 0 432 1 1068 47 0 0 chrX 31367348 31367477 -131232453 - AluY SINE Alu -12 299 171 212 368 40 23 chrX 31367509 31367683 -131232247 + L2 LINE L2 1035 1211 -2103 4387 123 34 8 chrX 31368074 31368387 -131231543 + L1PB4 LINE L1 5470 5773 -383 243 0 0 0 chrX 31368387 31368414 -131231516 + (CA)n Simple_repeat Simple_repeat 2 28 0 4387 123 34 8 chrX 31368414 31368769 -131231161 + L1PB4 LINE L1 5773 6156 0 2808 200 15 10 chrX 31368823 31369344 -131230586 + MLT1F LTR MaLR 7 530 -12 248 169 200 15 chrX 31369522 31369587 -131230343 + L1ME LINE L1 12 88 -5982 204 125 0 0 chrX 31369587 31369619 -131230311 + (TA)n Simple_repeat Simple_repeat 1 32 0 322 241 0 0 chrX 31369620 31369699 -131230231 + L1MC4 LINE L1 6614 6692 -1350 1204 89 0 6 chrX 31370187 31370344 -131229586 - L1PB1 LINE L1 0 6151 5996 3247 186 83 11 chrX 31370759 31371399 -131228531 + MER76 LTR ERV 1 686 -2 490 196 209 26 chrX 31372216 31372369 -131227561 + MER5A DNA MER1_type 9 189 0 1275 150 13 44 chrX 31372559 31372785 -131227145 + MER20 DNA MER1_type 1 219 0 677 183 57 80 chrX 31374605 31374780 -131225150 + MER5A DNA MER1_type 17 187 -2 183 80 0 0 chrX 31374932 31374957 -131224973 + (CA)n Simple_repeat Simple_repeat 2 26 0 223 163 23 23 chrX 31375240 31375283 -131224647 - L2 LINE L2 -23 3249 3207 327 104 0 0 chrX 31375458 31375506 -131224424 + (T)n Simple_repeat Simple_repeat 1 48 0 505 287 57 29 chrX 31375701 31375966 -131223964 + MLT1J2 LTR MaLR 17 285 -124 685 262 110 5 chrX 31377662 31377853 -131222077 - MER58A DNA MER1_type -8 216 6 826 159 129 29 chrX 31378503 31378673 -131221257 - MER5A DNA MER1_type -1 188 2 485 218 0 0 chrX 31379297 31379383 -131220547 - LTR16C LTR ERVL -21 470 385 2679 159 19 47 chrX 31379383 31379897 -131220033 - MLT1D LTR MaLR 0 505 6 1178 243 93 27 chrX 31379898 31380264 -131219666 - LTR16C LTR ERVL -98 393 4 443 180 80 30 chrX 31380652 31380752 -131219178 - L2 LINE L2 0 3272 3168 1219 131 56 49 chrX 31380795 31380877 -131219053 - MER33 DNA MER1_type -2262 323 243 2170 96 0 0 chrX 31380877 31381185 -131218745 + AluY SINE Alu 1 308 0 1219 131 56 49 chrX 31381185 31381368 -131218562 - MER33 DNA MER1_type -2342 243 55 371 215 37 37 chrX 31381673 31381780 -131218150 - MIR SINE MIR -32 230 124 197 329 29 0 chrX 31382564 31382634 -131217296 - MIR3 SINE MIR -33 175 104 791 151 44 63 chrX 31383811 31383970 -131215960 - MIR SINE MIR -30 232 77 2222 118 0 0 chrX 31384711 31385016 -131214914 + AluSx SINE Alu 2 306 -6 228 321 49 0 chrX 31385170 31385251 -131214679 - L2 LINE L2 -15 3257 3173 694 61 0 51 chrX 31386266 31386319 -131213611 - L1MA2 LINE L1 0 6304 6257 2308 103 0 7 chrX 31386319 31386621 -131213309 - AluSx SINE Alu -12 300 1 694 61 0 51 chrX 31386621 31386665 -131213265 - L1MA2 LINE L1 -47 6257 6212 445 262 234 7 chrX 31386688 31386829 -131213101 - L2 LINE L2 -5 3308 3136 458 269 28 9 chrX 31387731 31387839 -131212091 - MIR3 SINE MIR -53 155 46 371 181 0 14 chrX 31388607 31388679 -131211251 - HsTC2 DNA Tc2 -1824 74 4 281 317 41 28 chrX 31389213 31389358 -131210572 - MIR SINE MIR 0 262 116 1850 142 35 3 chrX 31389948 31390107 -131209823 - AluJb SINE Alu -21 291 118 222 37 0 0 chrX 31390107 31390134 -131209796 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1850 142 35 3 chrX 31390134 31390256 -131209674 - AluJb SINE Alu -194 118 1 716 292 111 46 chrX 31390357 31390772 -131209158 + MLT1H1 LTR MaLR 109 550 -5 739 160 0 0 chrX 31391050 31391156 -131208774 + FLAM_A SINE Alu 1 106 -36 287 128 0 0 chrX 31391156 31391195 -131208735 + FLAM_A SINE Alu 82 120 -13 35 0 0 0 chrX 31391689 31391724 -131208206 + AT_rich Low_complexity Low_complexity 1 35 0 299 243 93 77 chrX 31593377 31593459 -131006471 + MIR SINE MIR 3 65 -143 1887 81 0 4 chrX 31593459 31593705 -131006225 - AluY SINE Alu -32 279 35 299 243 93 77 chrX 31593705 31593787 -131006143 + MIR SINE MIR 65 144 -64 473 302 173 24 chrX 31593793 31594373 -131005557 - L2 LINE L2 0 3313 2635 403 328 131 10 chrX 31595857 31596171 -131003759 - L2 LINE L2 -858 2456 2105 5600 228 41 52 chrX 31596847 31598543 -131001387 - L1MA7 LINE L1 -3 6288 4628 1885 180 0 3 chrX 31598543 31598854 -131001076 - AluJb SINE Alu -2 310 1 5600 228 41 52 chrX 31598854 31599431 -131000499 - L1MA7 LINE L1 -1663 4628 4046 847 208 7 7 chrX 31599435 31599584 -131000346 + AluJb SINE Alu 107 255 -57 1146 191 5 0 chrX 31599586 31599796 -131000134 - L1MA7 LINE L1 -2113 4033 3823 1726 206 11 55 chrX 31599796 31600253 -130999677 + L1MA9 LINE L1 5842 6278 -34 28 0 0 0 chrX 31600253 31600281 -130999649 + AT_rich Low_complexity Low_complexity 1 28 0 240 243 0 57 chrX 31600570 31600640 -130999290 - L1M4b LINE L1 -6052 807 742 7501 198 35 8 chrX 31600647 31602054 -130997876 + L1M1 LINE L1 17 1461 -6104 1952 136 60 24 chrX 31602228 31602559 -130997371 - MER61A LTR ERV1 0 343 1 2388 93 16 10 chrX 31602559 31603185 -130996745 - MER61A-int LTR ERV1 0 5217 4543 1098 138 0 0 chrX 31603188 31603348 -130996582 + AluSg/x SINE Alu 141 300 -12 11295 96 32 14 chrX 31603348 31604943 -130994987 - MER61-int LTR ERV1 -245 4972 3349 1408 232 26 12 chrX 31604943 31605307 -130994623 - L1MA7 LINE L1 -2776 3370 2998 2135 186 41 3 chrX 31605307 31605695 -130994235 + MER57A LTR ERV1 1 403 0 1408 232 26 12 chrX 31605695 31605756 -130994174 - L1MA7 LINE L1 -3148 2998 2939 445 232 0 15 chrX 31605742 31605877 -130994053 - L1M4c LINE L1 -3886 2086 2017 * 860 294 43 60 chrX 31605922 31606575 -130993355 - L1M4c LINE L1 -4488 1484 843 2033 247 76 32 chrX 31606701 31607590 -130992340 - L1M4c LINE L1 -4518 1785 777 261 295 45 64 chrX 31607734 31607890 -130992040 - L1M4c LINE L1 -5216 675 523 960 297 51 39 chrX 31607992 31608382 -130991548 - L1M4c LINE L1 -5496 395 1 271 248 57 38 chrX 31608386 31608491 -130991439 + MLT1J LTR MaLR 405 511 0 183 333 26 13 chrX 31608491 31608569 -130991361 + L3 LINE CR1 1497 1575 -2 313 331 100 0 chrX 31610104 31610234 -130989696 - MIR SINE MIR -21 241 99 352 271 181 8 chrX 31610236 31610369 -130989561 - MLT1K LTR MaLR 0 588 433 211 274 0 0 chrX 31610375 31610448 -130989482 + T-rich Low_complexity Low_complexity 1 73 0 420 306 24 0 chrX 31610474 31610598 -130989332 - MLT1K LTR MaLR -163 425 299 283 376 18 18 chrX 31610628 31610793 -130989137 - MLT1K LTR MaLR -404 184 20 299 354 105 31 chrX 31611070 31611395 -130988535 + L2 LINE L2 2407 2755 -559 250 296 23 23 chrX 31611404 31611492 -130988438 + MIR3 SINE MIR 108 195 -13 642 244 6 39 chrX 31612630 31612810 -130987120 - L2 LINE L2 -10 3303 3130 1042 254 96 77 chrX 31613708 31614240 -130985690 - MLT1G LTR MaLR -6 561 10 270 136 0 0 chrX 31614540 31614584 -130985346 + (TAG)n Simple_repeat Simple_repeat 2 45 0 290 262 29 39 chrX 31614587 31614690 -130985240 - L2 LINE L2 -44 3269 3168 622 291 162 8 chrX 31614749 31614996 -130984934 + MLT1H LTR MaLR 35 319 -230 310 297 99 10 chrX 31615612 31615713 -130984217 + L2 LINE L2 3137 3246 -26 661 213 144 12 chrX 31616144 31616304 -130983626 - MER5A DNA MER1_type 0 189 9 23 0 0 0 chrX 31618202 31618225 -130981705 + AT_rich Low_complexity Low_complexity 1 23 0 201 94 0 0 chrX 31618774 31618806 -130981124 + (CAA)n Simple_repeat Simple_repeat 1 32 0 191 240 60 0 chrX 31619159 31619209 -130980721 + L2 LINE L2 3261 3313 0 * 596 294 136 6 chrX 31619207 31619569 -130980361 + L2 LINE L2 2592 2974 -340 962 234 88 15 chrX 31619673 31619947 -130979983 - Charlie4a DNA MER1_type -163 345 52 260 175 0 0 chrX 31619991 31620031 -130979899 + L2 LINE L2 3251 3290 -23 657 290 85 5 chrX 31620234 31620458 -130979472 - MLT1L LTR MaLR -13 602 361 231 236 28 28 chrX 31620601 31620673 -130979257 - MLT1J LTR MaLR -345 166 95 25 31 0 0 chrX 31621046 31621078 -130978852 + AT_rich Low_complexity Low_complexity 1 32 0 441 220 143 36 chrX 31621134 31621357 -130978573 - L1MC4a LINE L1 -1881 5927 5681 632 144 21 0 chrX 31621364 31621461 -130978469 - Tigger7 DNA MER2_type 0 2587 2489 209 250 18 0 chrX 31621534 31621590 -130978340 + (TA)n Simple_repeat Simple_repeat 1 57 0 545 285 92 19 chrX 31621602 31621809 -130978121 - L1MC4a LINE L1 -2143 5665 5444 214 261 62 0 chrX 31622136 31622201 -130977729 - MIR SINE MIR 0 262 194 2369 111 16 40 chrX 31622247 31622627 -130977303 - L1MA7 LINE L1 -2 6289 5919 685 266 6 12 chrX 31622627 31622800 -130977130 - MIR SINE MIR -72 190 19 394 291 171 0 chrX 31622804 31622962 -130976968 - MER5A DNA MER1_type -2 187 3 22 0 0 0 chrX 31623443 31623465 -130976465 + AT_rich Low_complexity Low_complexity 1 22 0 466 327 48 19 chrX 31624886 31625094 -130974836 + MIR SINE MIR 1 214 -48 290 251 42 90 chrX 31625155 31625322 -130974608 - HAL1 LINE L1 -1743 764 606 21 0 0 0 chrX 31626397 31626418 -130973512 + AT_rich Low_complexity Low_complexity 1 21 0 709 191 107 24 chrX 31626426 31626594 -130973336 - MER5A DNA MER1_type -1 188 7 491 182 10 63 chrX 31626717 31626852 -130973078 - MIR SINE MIR -25 237 38 460 236 50 29 chrX 31627097 31627237 -130972693 + HAL1 LINE L1 272 414 -2093 660 299 5 19 chrX 31627239 31627446 -130972484 - LTR16A1 LTR ERVL -1 456 253 1818 323 117 59 chrX 31627710 31629059 -130970871 + HAL1 LINE L1 420 1846 -661 777 263 64 29 chrX 31629114 31629460 -130970470 + HAL1 LINE L1 2149 2506 -1 414 307 7 40 chrX 31630078 31630228 -130969702 - MIR SINE MIR -48 214 70 1606 250 133 28 chrX 31631361 31631782 -130968148 - L1M4c LINE L1 -4473 2484 2109 2292 106 3 0 chrX 31631782 31632085 -130967845 - AluSx SINE Alu -8 304 1 1606 250 133 28 chrX 31632085 31632733 -130967197 - L1M4c LINE L1 -4848 2109 1262 405 200 12 0 chrX 31632811 31632896 -130967034 - MLT1B LTR MaLR -256 134 49 269 299 103 55 chrX 31632896 31633167 -130966763 - L1M4c LINE L1 -5796 1059 776 453 223 95 8 chrX 31633295 31633501 -130966429 - L1M4c LINE L1 -6371 484 11 21 57 0 0 chrX 31634146 31634181 -130965749 + AT_rich Low_complexity Low_complexity 1 35 0 2331 100 0 3 chrX 31634690 31634990 -130964940 + AluSx SINE Alu 1 299 -13 1670 173 7 24 chrX 31635000 31635289 -130964641 + AluJb SINE Alu 1 284 -28 25 65 0 0 chrX 31635656 31635702 -130964228 + GC_rich Low_complexity Low_complexity 1 46 0 350 258 128 97 chrX 31635731 31636153 -130963777 - L1M4b LINE L1 -5617 1341 907 21 82 0 0 chrX 31638423 31638472 -130961458 + AT_rich Low_complexity Low_complexity 1 49 0 463 153 0 0 chrX 31639108 31639180 -130960750 - AluSp/q SINE Alu -13 300 229 2096 57 0 0 chrX 31639299 31639572 -130960358 - AluY SINE Alu 0 311 39 12628 158 99 13 chrX 31639573 31643865 -130956065 + L1MA2 LINE L1 1449 6391 -1332 2229 122 6 0 chrX 31643865 31644176 -130955754 - AluSq SINE Alu 0 313 1 12628 158 99 13 chrX 31644176 31645635 -130954295 + L1MA2 LINE L1 6391 7723 0 2004 266 45 12 chrX 31645731 31646290 -130953640 - L1M4b LINE L1 -6273 586 10 364 303 92 15 chrX 31647138 31647333 -130952597 - L2 LINE L2 -622 2692 2483 297 294 63 7 chrX 31647333 31647476 -130952454 - L2 LINE L2 -1066 2248 2098 876 259 32 0 chrX 31648372 31648588 -130951342 + MIR SINE MIR 40 262 0 571 181 52 9 chrX 31649171 31649287 -130950643 + MER5B DNA MER1_type 1 121 -57 487 273 149 0 chrX 31649311 31649472 -130950458 + MER5A DNA MER1_type 4 188 -1 324 169 28 14 chrX 31649519 31649590 -130950340 + MLT1A2 LTR MaLR 1 72 -302 1465 242 32 64 chrX 31649662 31650195 -130949735 - LTR8 LTR ERV1 0 691 176 257 203 0 0 chrX 31650198 31650257 -130949673 + MLT1A2-int LTR MaLR 1677 1735 0 392 217 22 11 chrX 31650257 31650349 -130949581 + MLT1A2 LTR MaLR 1 93 -281 2052 197 20 0 chrX 31650508 31650904 -130949026 - LTR57 LTR ERVL -7 404 1 841 199 72 82 chrX 31650904 31651195 -130948735 + MLT1A2 LTR MaLR 80 367 -7 258 95 0 0 chrX 31651361 31651403 -130948527 + (CA)n Simple_repeat Simple_repeat 1 42 0 711 265 21 0 chrX 31651446 31651635 -130948295 + MER58A DNA MER1_type 1 193 -31 1202 155 63 14 chrX 31652408 31652692 -130947238 + L1MA9 LINE L1 6014 6311 -1 383 340 97 11 chrX 31652727 31652912 -130947018 - MIR SINE MIR -4 258 58 246 32 0 0 chrX 31653073 31653104 -130946826 + (TG)n Simple_repeat Simple_repeat 2 32 0 201 182 0 23 chrX 31653115 31653159 -130946771 - MIR3 SINE MIR -156 52 10 251 254 70 0 chrX 31653531 31653602 -130946328 - ERVL LTR ERVL -2282 3482 3407 237 68 17 68 chrX 31653662 31653721 -130946209 + (TTTTTG)n Simple_repeat Simple_repeat 1 56 0 1713 118 8 12 chrX 31653738 31653984 -130945946 - AluSq SINE Alu -32 281 37 385 221 0 0 chrX 31654165 31654260 -130945670 + L1M4c LINE L1 1463 1557 -4827 1918 186 75 2 chrX 31654260 31654659 -130945271 - MSTA LTR MaLR 0 428 1 4434 174 40 16 chrX 31654659 31655549 -130944381 - MSTA-int LTR MaLR 0 1651 740 487 306 17 0 chrX 31655594 31655774 -130944156 + L1M4c LINE L1 1553 1735 -4649 2112 94 0 39 chrX 31656393 31656700 -130943230 - AluSx SINE Alu 0 312 18 342 273 127 0 chrX 31656807 31656972 -130942958 + L1MC5 LINE L1 7693 7878 -83 311 292 56 50 chrX 31658322 31658483 -130941447 - LTR16C LTR ERVL -162 329 168 1847 133 66 30 chrX 31659005 31659367 -130940563 - THE1C LTR MaLR 0 375 1 2481 147 20 15 chrX 31659371 31659828 -130940102 - THE1C-int LTR MaLR -4 1576 1118 2163 137 464 12 chrX 31659937 31660512 -130939418 - THE1C-int LTR MaLR -739 841 7 1787 147 58 19 chrX 31660518 31660879 -130939051 - THE1C LTR MaLR 0 375 1 192 295 0 95 chrX 31662517 31662612 -130937318 - L2 LINE L2 -50 3222 3137 1483 176 3 76 chrX 31662925 31663255 -130936675 - AluJb SINE Alu -6 306 1 204 40 0 0 chrX 31663312 31663337 -130936593 + (TG)n Simple_repeat Simple_repeat 2 26 0 256 317 31 25 chrX 31663525 31663686 -130936244 - MLT1J2 LTR MaLR -3 447 286 322 278 79 13 chrX 31663742 31663922 -130936008 - MLT1J2 LTR MaLR -257 189 1 400 314 126 28 chrX 31664487 31664742 -130935188 + HAL1 LINE L1 812 1091 -1416 357 284 165 88 chrX 31664746 31665256 -130934674 + L1M2 LINE L1 780 1328 -5521 322 127 28 0 chrX 31666018 31666089 -130933841 + (GGGTG)n Simple_repeat Simple_repeat 1 73 0 1785 190 14 3 chrX 31666814 31667167 -130932763 + MSTB LTR MaLR 57 413 -13 788 292 62 3 chrX 31667170 31667571 -130932359 - LTR16C LTR ERVL -27 464 3 721 289 18 76 chrX 31668975 31669356 -130930574 + LTR16B LTR ERVL 106 464 0 780 279 58 80 chrX 31670338 31670681 -130929249 + LTR16C LTR ERVL 85 419 -72 1393 219 36 36 chrX 31670681 31671046 -130928884 + MLT1A1 LTR MaLR 1 365 0 780 279 58 80 chrX 31671046 31671115 -130928815 + LTR16C LTR ERVL 419 488 -3 1704 186 3 10 chrX 31671919 31672220 -130927710 - AluJo SINE Alu -13 299 1 1651 196 31 52 chrX 31672773 31673258 -130926672 + L1MC4 LINE L1 7337 7811 -231 725 226 0 46 chrX 31673258 31673453 -130926477 - AluJo SINE Alu 0 312 127 33 43 0 0 chrX 31673759 31673806 -130926124 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chrX 31673863 31673884 -130926046 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chrX 31673939 31674001 -130925929 + AT_rich Low_complexity Low_complexity 1 62 0 262 300 83 25 chrX 31674055 31674175 -130925755 + MIR SINE MIR 16 142 -66 1990 151 7 7 chrX 31675309 31675667 -130924263 - AluSx SINE Alu 0 364 7 1981 274 81 24 chrX 31675826 31676167 -130923763 + HAL1 LINE L1 43 363 -2144 1717 212 33 42 chrX 31676167 31676620 -130923310 - LTR2 LTR ERV1 0 449 1 1981 274 81 24 chrX 31676620 31677080 -130922850 + HAL1 LINE L1 363 890 -1617 262 0 0 50 chrX 31677082 31677122 -130922808 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 4432 111 1 0 chrX 31677185 31677876 -130922054 - L1PA8 LINE L1 -948 5198 4507 6763 70 12 2 chrX 31677876 31678849 -130921081 + L1PA8 LINE L1 5186 6167 -5 3377 254 75 14 chrX 31678851 31680196 -130919734 + HAL1 LINE L1 968 2394 -113 994 225 12 8 chrX 31680339 31680588 -130919342 + L1MC5 LINE L1 6990 7239 -722 771 283 73 29 chrX 31680671 31681699 -130918231 + L1ME3A LINE L1 4876 5952 -218 735 250 6 0 chrX 31683039 31683215 -130916715 + MER5B DNA MER1_type 2 178 0 493 238 186 0 chrX 31683226 31683374 -130916556 + MER5A DNA MER1_type 4 183 -6 207 214 0 0 chrX 31683789 31683831 -130916099 + MIR SINE MIR 216 257 -5 318 324 30 72 chrX 31684746 31685008 -130914922 + LTR16A1 LTR ERVL 195 445 -12 275 305 85 24 chrX 31686423 31686505 -130913425 + MER5A DNA MER1_type 37 123 -66 259 317 39 10 chrX 31686622 31686726 -130913204 + L2 LINE L2 3188 3294 -19 31 0 0 0 chrX 31686990 31687021 -130912909 + AT_rich Low_complexity Low_complexity 1 31 0 207 333 13 13 chrX 31687051 31687129 -130912801 - MIR SINE MIR -126 136 59 385 250 311 11 chrX 31687632 31687812 -130912118 + MLT1K LTR MaLR 17 250 -338 1313 93 52 0 chrX 31687860 31688054 -130911876 - L1PA13 LINE L1 -8 6155 5952 836 295 26 57 chrX 31688697 31689121 -130910809 - LTR67 LTR ERVL -33 524 114 6744 189 37 35 chrX 31689198 31689828 -130910102 - L1 LINE L1 -1052 5094 4467 1429 170 193 33 chrX 31689828 31690222 -130909708 - MSTB2 LTR MaLR 0 457 1 6744 189 37 35 chrX 31690222 31691168 -130908762 - L1 LINE L1 -1679 4467 3510 2131 107 0 26 chrX 31691168 31691477 -130908453 - AluSx SINE Alu -11 301 1 6744 189 37 35 chrX 31691477 31691669 -130908261 - L1 LINE L1 -2636 3510 3320 4565 225 61 12 chrX 31691668 31692743 -130907187 - L1PA13 LINE L1 -5554 1233 106 * 215 377 0 13 chrX 31692748 31692825 -130907105 - MIR SINE MIR -165 97 22 207 114 0 0 chrX 31694160 31694195 -130905735 + (TG)n Simple_repeat Simple_repeat 2 36 0 197 337 11 22 chrX 31694273 31694362 -130905568 - L2 LINE L2 -675 2639 2552 1353 153 134 15 chrX 31695121 31695389 -130904541 - AluJb SINE Alu -2 300 1 2355 264 69 7 chrX 31698957 31700175 -130899755 - L1ME LINE L1 -704 5462 4166 261 222 36 126 chrX 31700495 31700662 -130899268 + MIR SINE MIR 108 259 -3 2109 95 7 7 chrX 31701216 31701537 -130898393 + AluSq SINE Alu 1 313 0 2295 222 131 97 chrX 31701583 31702084 -130897846 + L1MD3 LINE L1 6564 7046 -949 366 163 214 20 chrX 31702084 31702182 -130897748 + MLT1F1 LTR MaLR 9 125 -442 2295 222 131 97 chrX 31702182 31702764 -130897166 + L1MD3 LINE L1 7046 7993 -2 210 349 61 30 chrX 31702828 31702960 -130896970 + MER5A DNA MER1_type 53 188 -1 1632 176 31 28 chrX 31703791 31704144 -130895786 + MLT2D LTR ERVL 1 354 -60 189 0 0 0 chrX 31704145 31704166 -130895764 + (TC)n Simple_repeat Simple_repeat 2 22 0 207 0 0 0 chrX 31704315 31704338 -130895592 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 420 20 0 0 chrX 31704337 31704386 -130895544 + (CA)n Simple_repeat Simple_repeat 2 50 0 245 371 0 11 chrX 31704641 31704730 -130895200 + MER5B DNA MER1_type 13 100 -78 2014 74 0 0 chrX 31706617 31706860 -130893070 - AluSq SINE Alu -70 243 1 21 0 0 0 chrX 31707493 31707514 -130892416 + AT_rich Low_complexity Low_complexity 1 21 0 855 174 63 74 chrX 31707514 31707729 -130892201 - L1MC4 LINE L1 -8 8034 7818 525 100 0 0 chrX 31707729 31707819 -130892111 + (TA)n Simple_repeat Simple_repeat 2 91 0 2201 86 7 3 chrX 31707819 31708109 -130891821 - AluSx SINE Alu -21 291 1 855 174 63 74 chrX 31708109 31708243 -130891687 - L1MC4 LINE L1 -222 7820 7688 324 319 125 82 chrX 31709164 31709725 -130890205 + L1M2 LINE L1 823 1407 -5442 3529 180 73 25 chrX 31709829 31710755 -130889175 - L1MA9 LINE L1 -38 6274 5258 1634 172 129 65 chrX 31710755 31711312 -130888618 - LTR49 LTR ERV1 0 595 3 3529 180 73 25 chrX 31711312 31711744 -130888186 - L1MA9 LINE L1 -1054 5258 4848 2479 137 20 0 chrX 31711754 31712149 -130887781 - MER57A LTR ERV1 0 403 1 15367 114 73 44 chrX 31712149 31714916 -130885014 - MER57A-int LTR ERV1 0 7537 4692 1282 136 5 0 chrX 31714918 31715124 -130884806 - MER57A LTR ERV1 -196 207 1 340 111 0 0 chrX 31715164 31715218 -130884712 + LTR24B LTR ERV1 1 54 -522 1094 200 28 22 chrX 31715414 31715734 -130884196 + LTR23-int LTR ERV1 373 694 -4429 438 290 21 7 chrX 31716506 31716651 -130883279 + LTR23-int LTR ERV1 1129 1275 -5056 4953 126 16 24 chrX 31716659 31717306 -130882624 + L1MC1 LINE L1 5471 6112 -221 1879 184 94 8 chrX 31717306 31717572 -130882358 - MSTB LTR MaLR 0 426 114 185 0 40 0 chrX 31717572 31717597 -130882333 + (CGGGGG)n Simple_repeat Simple_repeat 2 27 0 1879 184 94 8 chrX 31717597 31717722 -130882208 - MSTB LTR MaLR -312 114 1 4953 126 16 24 chrX 31717722 31717924 -130882006 + L1MC1 LINE L1 6112 6314 -19 716 206 7 7 chrX 31718679 31718825 -130881105 - MLT1A2 LTR MaLR -11 363 218 524 131 71 0 chrX 31718935 31719034 -130880896 - L1 LINE L1 -1998 4148 4043 3468 88 4 6 chrX 31719043 31719542 -130880388 + L1MA1 LINE L1 5805 6302 0 400 200 44 11 chrX 31719567 31719657 -130880273 - MLT1A2 LTR MaLR -273 101 9 375 312 86 18 chrX 31720413 31720634 -130879296 + HAL1 LINE L1 2083 2318 -189 25 0 0 0 chrX 31720655 31720680 -130879250 + AT_rich Low_complexity Low_complexity 1 25 0 194 211 70 28 chrX 31720996 31721067 -130878863 + MER5C DNA MER1_type 96 169 -155 185 259 0 69 chrX 31721678 31721736 -130878194 + L2 LINE L2 3112 3165 -107 47 33 0 0 chrX 31721881 31721942 -130877988 + AT_rich Low_complexity Low_complexity 1 61 0 221 311 66 38 chrX 31722325 31722431 -130877499 - L2 LINE L2 -20 3293 3185 30 45 0 0 chrX 31722569 31722613 -130877317 + AT_rich Low_complexity Low_complexity 1 44 0 249 288 123 7 chrX 31722900 31723046 -130876884 + L1MC5 LINE L1 7342 7504 -457 732 208 101 39 chrX 31723084 31723392 -130876538 + L1MC5 LINE L1 7605 7931 -30 22 0 0 0 chrX 31723960 31723982 -130875948 + AT_rich Low_complexity Low_complexity 1 22 0 974 195 5 5 chrX 31724172 31724362 -130875568 + MLT1B LTR MaLR 201 390 0 268 362 31 16 chrX 31725808 31725935 -130873995 + MIR3 SINE MIR 32 160 -48 246 344 129 0 chrX 31726054 31726217 -130873713 - MIR SINE MIR -63 199 16 189 261 58 72 chrX 31728731 31728800 -130871130 + MIR3 SINE MIR 3 70 -138 779 163 7 7 chrX 31728869 31729010 -130870920 + Ricksha DNA DNA 1 141 -3105 1577 167 0 7 chrX 31729045 31729314 -130870616 - AluSx SINE Alu 0 312 46 2643 146 2 14 chrX 31729340 31729780 -130870150 + Ricksha DNA DNA 1690 2124 -1122 264 235 0 0 chrX 31729782 31729850 -130870080 + C-rich Low_complexity Low_complexity 3 70 0 883 140 23 10 chrX 31729850 31730251 -130869679 + CT-rich Low_complexity Low_complexity 1 406 0 1402 145 12 64 chrX 31730251 31730500 -130869430 - AluSx SINE Alu -16 296 61 4366 153 23 31 chrX 31730500 31730882 -130869048 + Ricksha DNA DNA 2307 2690 -556 2234 82 7 13 chrX 31730882 31731168 -130868762 + AluSq SINE Alu 1 286 -27 499 70 12 12 chrX 31731168 31731254 -130868676 + (CA)n Simple_repeat Simple_repeat 2 87 0 2234 82 7 13 chrX 31731254 31731273 -130868657 + AluSq SINE Alu 286 304 -9 4366 153 23 31 chrX 31731273 31731829 -130868101 + Ricksha DNA DNA 2690 3238 -8 683 285 104 11 chrX 31731839 31732193 -130867737 - LTR33 LTR ERVL -134 387 1 195 129 0 0 chrX 31732671 31732702 -130867228 + (TG)n Simple_repeat Simple_repeat 2 32 0 5278 82 9 1 chrX 31735626 31736312 -130863618 + LTR8 LTR ERV1 1 691 0 315 369 46 0 chrX 31737384 31737514 -130862416 - L2 LINE L2 -10 3262 3127 247 32 0 0 chrX 31737547 31737578 -130862352 + (TTTG)n Simple_repeat Simple_repeat 2 136 0 2236 89 0 0 chrX 31737578 31737860 -130862070 - AluY SINE Alu -1 312 1 4444 224 46 38 chrX 31738005 31740282 -130859648 + L1M4 LINE L1 334 2762 -3884 2535 141 6 32 chrX 31740281 31741010 -130858920 - L1MA5 LINE L1 -629 5671 4958 * 3314 161 8 21 chrX 31741010 31741636 -130858294 + L1MA5 LINE L1 5677 6300 0 1410 256 87 3 chrX 31741645 31742232 -130857698 + L1M4 LINE L1 2754 3389 -3255 2106 132 0 0 chrX 31742267 31742571 -130857359 - AluY SINE Alu -6 305 2 288 122 0 0 chrX 31742572 31742613 -130857317 - L1M1 LINE L1 -7509 56 16 2168 114 0 32 chrX 31742736 31743051 -130856879 + AluSq SINE Alu 1 305 -8 789 190 0 52 chrX 31743096 31743270 -130856660 - L1MB5 LINE L1 0 6174 6010 18030 171 48 20 chrX 31743272 31748176 -130851754 + L1MA3 LINE L1 704 5748 -1817 6379 135 31 6 chrX 31748174 31749618 -130850312 + L1MA3 LINE L1 6242 7724 0 * 26 50 0 0 chrX 31749634 31749674 -130850256 + AT_rich Low_complexity Low_complexity 1 40 0 528 310 66 60 chrX 31749878 31750259 -130849671 + L3 LINE CR1 522 904 -673 274 23 47 0 chrX 31750745 31750788 -130849142 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 9405 35 2 0 chrX 31750794 31752701 -130847229 - L1PA4 LINE L1 -8 6147 4239 330 293 9 60 chrX 31752927 31753105 -130846825 + L1MC/D LINE L1 5684 5864 -257 21 0 0 0 chrX 31753162 31753183 -130846747 + AT_rich Low_complexity Low_complexity 1 21 0 936 210 78 47 chrX 31753200 31753457 -130846473 + LTR40a LTR ERVL 3 267 -252 5673 127 29 3 chrX 31753517 31754616 -130845314 - L1MA8 LINE L1 -75 6216 5096 579 29 0 0 chrX 31755032 31755101 -130844829 + (CA)n Simple_repeat Simple_repeat 2 70 0 271 333 11 0 chrX 31755825 31755915 -130844015 + MIR SINE MIR 48 138 -124 421 182 0 126 chrX 31755975 31756118 -130843812 + L1M3 LINE L1 5403 5527 -641 234 132 47 66 chrX 31757015 31757121 -130842809 + (TATAA)n Simple_repeat Simple_repeat 4 107 0 233 238 68 88 chrX 31757227 31757374 -130842556 - MER65B LTR ERV1 -77 454 311 1055 210 42 91 chrX 31757704 31758057 -130841873 - MER58B DNA MER1_type -1 340 5 27 0 0 0 chrX 31758585 31758612 -130841318 + AT_rich Low_complexity Low_complexity 1 27 0 2328 113 0 0 chrX 31758902 31759211 -130840719 + AluSx SINE Alu 1 309 -3 241 347 10 82 chrX 31761000 31761098 -130838832 + MER91A DNA MER1_type 98 188 -8 539 227 0 0 chrX 31761183 31761293 -130838637 - MER94 DNA DNA -20 114 5 1805 106 118 72 chrX 31761293 31761641 -130838289 - THE1B LTR MaLR 0 364 1 10377 97 64 18 chrX 31761641 31763151 -130836779 - THE1B-int LTR MaLR 0 1580 1 1019 131 12 6 chrX 31763151 31763311 -130836619 - THE1B LTR MaLR 0 364 204 882 74 0 0 chrX 31763311 31763419 -130836511 - AluSq SINE Alu -72 241 134 506 182 14 35 chrX 31763429 31763572 -130836358 - L1MA8 LINE L1 -3 6288 6149 1241 121 15 0 chrX 31763572 31763770 -130836160 + L1MA7 LINE L1 5688 5888 -403 300 53 0 0 chrX 31764745 31764783 -130835147 + (CA)n Simple_repeat Simple_repeat 2 39 0 41 21 0 0 chrX 31764899 31764947 -130834983 + AT_rich Low_complexity Low_complexity 1 48 0 1462 185 127 10 chrX 31764947 31765261 -130834669 + MSTB LTR MaLR 1 351 -75 271 246 0 15 chrX 31765273 31765407 -130834523 + (TA)n Simple_repeat Simple_repeat 1 132 0 184 286 41 0 chrX 31765804 31765853 -130834077 - MIR SINE MIR -122 86 36 185 277 46 0 chrX 31766778 31766843 -130833087 + L3 LINE CR1 977 1044 -533 2386 296 58 30 chrX 31767527 31768481 -130831449 + L1M4b LINE L1 12 1224 -5635 799 182 22 62 chrX 31768940 31769165 -130830765 + L1M4b LINE L1 1219 1434 -5425 1355 262 15 3 chrX 31769426 31769769 -130830161 + L1PA13 LINE L1 264 610 -6177 21 57 0 0 chrX 31770772 31770807 -130829123 + AT_rich Low_complexity Low_complexity 1 35 0 1033 277 106 56 chrX 31771028 31771266 -130828664 + L1MC5 LINE L1 6741 6966 -995 375 113 0 0 chrX 31771266 31771328 -130828602 + (CA)n Simple_repeat Simple_repeat 2 63 0 1033 277 106 56 chrX 31771328 31771764 -130828166 + L1MC5 LINE L1 6966 7379 -582 180 0 0 0 chrX 31771764 31771784 -130828146 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1033 277 106 56 chrX 31771784 31772112 -130827818 + L1MC5 LINE L1 7379 7794 -167 1849 133 48 48 chrX 31772123 31772498 -130827432 - THE1C LTR MaLR 0 375 1 391 317 49 0 chrX 31772633 31772797 -130827133 - L1M4 LINE L1 -2114 4032 3861 22 0 0 0 chrX 31772845 31772867 -130827063 + AT_rich Low_complexity Low_complexity 1 22 0 15612 169 32 6 chrX 31772867 31780087 -130819843 - L1MA2 LINE L1 0 7723 12 699 297 94 18 chrX 31780339 31780679 -130819251 + HAL1b LINE L1 280 645 -703 32 0 0 0 chrX 31780711 31780743 -130819187 + AT_rich Low_complexity Low_complexity 1 32 0 1366 185 11 8 chrX 31781178 31781448 -130818482 - L1MC4a LINE L1 -401 7407 7093 299 245 11 0 chrX 31781449 31781543 -130818387 + (TA)n Simple_repeat Simple_repeat 1 95 0 388 113 0 0 chrX 31781553 31781615 -130818315 + L1MC3 LINE L1 7031 7092 -693 738 198 0 0 chrX 31781641 31781818 -130818112 + (TA)n Simple_repeat Simple_repeat 2 178 0 254 133 0 0 chrX 31781860 31781905 -130818025 - L1MC4 LINE L1 -1339 6703 6659 3570 173 74 3 chrX 31781942 31782408 -130817522 + L1MC3 LINE L1 6367 6897 -888 240 111 0 0 chrX 31782408 31782444 -130817486 + (CA)n Simple_repeat Simple_repeat 1 36 0 3570 173 74 3 chrX 31782444 31782655 -130817275 + L1MC3 LINE L1 6897 7092 -693 1494 174 22 7 chrX 31782694 31782970 -130816960 - L1MC3 LINE L1 -1139 6646 6367 214 383 26 9 chrX 31784454 31784569 -130815361 + L2 LINE L2 3156 3272 0 184 30 61 0 chrX 31787277 31787310 -130812620 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2252 84 0 0 chrX 31787312 31787597 -130812333 - AluSc SINE Alu -24 285 1 203 331 89 45 chrX 31787598 31787755 -130812175 - L2 LINE L2 -475 2839 2676 6165 153 19 14 chrX 31789403 31791335 -130808595 - L1MA8 LINE L1 -2 6289 4346 5235 173 40 16 chrX 31791330 31792989 -130806941 - L1MA4 LINE L1 -6 6294 4587 * 467 71 0 0 chrX 31792989 31793059 -130806871 - L1MA2 LINE L1 0 6304 6235 5235 173 40 16 chrX 31793059 31793359 -130806571 - L1MA4 LINE L1 -1713 4587 4296 610 288 40 0 chrX 31793362 31793539 -130806391 + MIR SINE MIR 66 249 -13 3457 132 9 2 chrX 31793960 31794499 -130805431 - L1PA14 LINE L1 -2 6159 5617 1479 251 52 38 chrX 31794526 31794608 -130805322 + L1ME1 LINE L1 5601 5680 -486 1892 156 0 20 chrX 31794608 31794910 -130805020 - AluJo SINE Alu -14 298 3 1479 251 52 38 chrX 31794910 31795384 -130804546 + L1ME1 LINE L1 5680 6165 -1 384 296 101 30 chrX 31795379 31795698 -130804232 - L1M4c LINE L1 -4742 2545 2040 * 26 30 0 0 chrX 31796245 31796278 -130803652 + AT_rich Low_complexity Low_complexity 1 33 0 276 162 0 40 chrX 31796278 31796352 -130803578 - L1MA3 LINE L1 0 6305 6235 1703 136 88 28 chrX 31796352 31796704 -130803226 - THE1C LTR MaLR 0 375 3 930 286 59 44 chrX 31797181 31797704 -130802226 - MLT1G3 LTR MaLR -4 563 7 29 0 0 0 chrX 31798888 31798917 -130801013 + AT_rich Low_complexity Low_complexity 1 29 0 524 128 0 0 chrX 31800450 31800560 -130799370 + AluSg/x SINE Alu 203 312 0 325 304 115 29 chrX 31800585 31800828 -130799102 - L1M4c LINE L1 -6269 735 472 476 205 103 58 chrX 31805494 31805650 -130794280 + MER5A DNA MER1_type 27 189 0 3587 202 24 11 chrX 31805762 31806486 -130793444 - LTR68 LTR ERV1 -7 733 1 1552 236 35 56 chrX 31808384 31808863 -130791067 - MER110 LTR ERV1 -22 469 1 239 124 52 21 chrX 31809012 31809109 -130790821 + (TA)n Simple_repeat Simple_repeat 1 100 0 300 146 34 0 chrX 31809666 31809755 -130790175 + (TA)n Simple_repeat Simple_repeat 1 92 0 2116 249 119 22 chrX 31809760 31810492 -130789438 - Charlie7 DNA MER1_type -79 2533 1685 306 0 0 0 chrX 31810492 31810526 -130789404 + (TG)n Simple_repeat Simple_repeat 2 35 0 2116 249 119 22 chrX 31810526 31810749 -130789181 - Charlie7 DNA MER1_type -927 1685 1485 394 290 205 0 chrX 31810761 31810961 -130788969 - Charlie7 DNA MER1_type -2271 341 101 207 170 191 0 chrX 31812009 31812056 -130787874 - MER5A DNA MER1_type -105 84 29 820 222 6 6 chrX 31812263 31812439 -130787491 + MER5B DNA MER1_type 3 178 0 218 312 196 7 chrX 31812471 31812609 -130787321 + MER5A DNA MER1_type 26 189 0 25 51 0 0 chrX 31812615 31812654 -130787276 + AT_rich Low_complexity Low_complexity 1 39 0 2964 189 7 0 chrX 31812654 31813227 -130786703 - L1MB1 LINE L1 -1 6167 5591 758 176 14 14 chrX 31813228 31813370 -130786560 - L1M4c LINE L1 -6888 142 1 5403 193 22 12 chrX 31813376 31813602 -130786328 + L1MC1 LINE L1 4890 5112 -1221 2365 81 0 7 chrX 31813602 31813911 -130786019 + AluSx SINE Alu 1 307 -5 5403 193 22 12 chrX 31813911 31815115 -130784815 + L1MC1 LINE L1 5112 6332 -1 690 312 89 24 chrX 31815116 31815172 -130784758 - L2 LINE L2 -618 2696 2645 2045 153 56 63 chrX 31815172 31815603 -130784327 + MSTA LTR MaLR 1 428 0 690 312 89 24 chrX 31815603 31815838 -130784092 - L2 LINE L2 -669 2645 2386 1479 163 15 0 chrX 31816470 31816740 -130783190 + L1MB2 LINE L1 5895 6168 -3 257 299 15 0 chrX 31816990 31817057 -130782873 + MIR SINE MIR 65 132 -130 258 32 0 0 chrX 31817317 31817348 -130782582 + (TC)n Simple_repeat Simple_repeat 2 32 0 201 121 0 0 chrX 31817349 31817382 -130782548 + (CA)n Simple_repeat Simple_repeat 2 34 0 2077 128 3 0 chrX 31818463 31818759 -130781171 - AluSx SINE Alu -15 297 1 187 316 53 26 chrX 31819710 31819786 -130780144 - L3 LINE CR1 -11 1566 1489 390 323 70 0 chrX 31819886 31820072 -130779858 + MIR SINE MIR 36 234 -28 883 34 0 17 chrX 31820076 31820193 -130779737 + L1P LINE L1 1824 1938 -4208 539 323 62 31 chrX 31820193 31820481 -130779449 - L3 LINE CR1 -949 628 332 290 294 11 0 chrX 31822064 31822156 -130777774 + L1ME3A LINE L1 3 95 -5975 1499 289 83 6 chrX 31822309 31823197 -130776733 + L1ME3A LINE L1 2545 3501 -2579 1103 265 111 39 chrX 31823234 31823720 -130776210 + L1ME3A LINE L1 5471 5991 -113 25 31 0 0 chrX 31823790 31823822 -130776108 + AT_rich Low_complexity Low_complexity 1 32 0 281 335 48 20 chrX 31824329 31824577 -130775353 - L1MC/D LINE L1 -1939 5869 5615 26 50 0 0 chrX 31825089 31825129 -130774801 + AT_rich Low_complexity Low_complexity 1 40 0 2260 99 9 0 chrX 31826345 31826667 -130773263 + L1PA14 LINE L1 5833 6157 -4 2375 185 36 20 chrX 31826689 31827518 -130772412 - L1 LINE L1 -3563 4002 3165 2219 109 10 10 chrX 31828040 31828351 -130771579 - AluSx SINE Alu -1 311 1 304 130 36 11 chrX 31828725 31828805 -130771125 - MLT1H1 LTR MaLR -19 536 297 354 45 0 0 chrX 31828917 31828961 -130770969 + (CA)n Simple_repeat Simple_repeat 2 45 0 469 317 94 28 chrX 31828990 31829309 -130770621 + L1M4 LINE L1 77 416 -6126 1620 167 101 10 chrX 31829389 31829695 -130770235 + L1M1 LINE L1 13 346 -7219 446 300 38 55 chrX 31829842 31830318 -130769612 - L1MC/D LINE L1 -1117 5029 4562 1704 171 47 44 chrX 31830877 31831239 -130768691 - MLT1A1 LTR MaLR 0 365 3 24 0 0 0 chrX 31831597 31831621 -130768309 + AT_rich Low_complexity Low_complexity 1 24 0 5559 177 24 20 chrX 31831683 31833121 -130766809 - L1MA9 LINE L1 -105 6207 4749 6512 77 18 33 chrX 31833121 31834203 -130765727 - L1PA12 LINE L1 -3 6165 5076 5559 177 24 20 chrX 31834203 31834784 -130765146 - L1MA9 LINE L1 -1563 4749 4172 500 292 40 53 chrX 31835253 31835479 -130764451 - MIR SINE MIR -24 238 16 339 341 16 8 chrX 31835597 31835726 -130764204 - L2 LINE L2 0 3313 3184 2667 68 0 22 chrX 31836949 31837315 -130762615 + L1PB1 LINE L1 5776 6133 -18 24 32 0 0 chrX 31838100 31838131 -130761799 + AT_rich Low_complexity Low_complexity 1 31 0 291 259 0 0 chrX 31838472 31838553 -130761377 + MLT1I LTR MaLR 326 406 -3 674 160 0 0 chrX 31838653 31838772 -130761158 - L1MA5 LINE L1 0 6300 6182 2255 117 0 0 chrX 31839574 31839873 -130760057 - AluSx SINE Alu -13 299 1 279 355 103 19 chrX 31840289 31840444 -130759486 + L2 LINE L2 3100 3267 -5 1454 167 106 28 chrX 31840515 31840797 -130759133 - AluJb SINE Alu -8 304 1 1872 170 50 8 chrX 31840805 31841164 -130758766 - L1PB4 LINE L1 -1 6155 5782 225 196 0 0 chrX 31841165 31841216 -130758714 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 1242 137 38 0 chrX 31841296 31841507 -130758423 - L1PB4 LINE L1 -367 5789 5571 5735 128 15 17 chrX 31841521 31842457 -130757473 - L1MA1 LINE L1 0 6302 5369 2393 60 0 26 chrX 31842808 31843110 -130756820 - AluY SINE Alu -17 294 1 1166 338 43 16 chrX 31843781 31844293 -130755637 - MER115 DNA AcHobo -12 681 156 2010 138 0 3 chrX 31844661 31844958 -130754972 + AluSx SINE Alu 1 296 -16 2474 59 0 31 chrX 31845009 31845330 -130754600 + AluY SINE Alu 1 311 0 200 336 82 27 chrX 31845770 31845916 -130754014 + MIR SINE MIR 36 189 -73 692 271 20 8 chrX 31846719 31846974 -130752956 - L1MDa LINE L1 -3156 4409 4152 2430 202 14 47 chrX 31846974 31847469 -130752461 - MLT2B3 LTR ERVL -4 550 72 295 57 0 0 chrX 31847568 31847603 -130752327 + U6 snRNA snRNA 1 35 -72 538 70 0 0 chrX 31847607 31847678 -130752252 - MLT2B3 LTR ERVL -483 71 1 1973 252 51 30 chrX 31847679 31849005 -130750925 - L1MDa LINE L1 -3420 4145 2789 515 248 15 7 chrX 31849035 31849172 -130750758 + LTR40a LTR ERVL 1 138 -381 1876 189 152 126 chrX 31849206 31849323 -130750607 - MLT1E2 LTR MaLR 0 626 513 2092 126 32 54 chrX 31849323 31849695 -130750235 + THE1B LTR MaLR 1 364 0 1876 189 152 126 chrX 31849695 31850203 -130749727 - MLT1E2 LTR MaLR -113 513 13 1635 239 153 16 chrX 31850288 31850992 -130748938 - L1M4 LINE L1 -2711 3435 2635 307 333 0 35 chrX 31851048 31851162 -130748768 - L1MDa LINE L1 -5847 1718 1609 * 819 186 0 51 chrX 31851146 31851302 -130748628 - L1MDa LINE L1 -6376 1189 1042 234 394 108 35 chrX 31852005 31852588 -130747342 - L2 LINE L2 0 3272 2633 210 362 32 11 chrX 31854960 31855054 -130744876 - MER5A DNA MER1_type -93 96 1 1090 287 70 52 chrX 31855303 31856098 -130743832 + L2 LINE L2 2514 3312 -1 3380 207 19 20 chrX 31856188 31857068 -130742862 - L1M LINE L1 -743 5403 4543 1172 130 19 19 chrX 31857054 31857117 -130742813 + L1M3 LINE L1 5425 5487 -847 * 2095 123 16 10 chrX 31857117 31857427 -130742503 + AluSx SINE Alu 1 312 0 1172 130 19 19 chrX 31857427 31857570 -130742360 + L1M3 LINE L1 5486 5631 -703 * 4042 182 30 14 chrX 31857560 31858323 -130741607 + L1MA9 LINE L1 5178 6058 -254 1979 100 15 0 chrX 31858323 31858592 -130741338 + AluSx SINE Alu 33 305 -7 4042 182 30 14 chrX 31858592 31858775 -130741155 + L1MA9 LINE L1 6058 6237 -75 235 83 0 28 chrX 31859248 31859284 -130740646 + MARNA DNA Mariner 163 197 -389 1844 201 24 75 chrX 31859743 31860275 -130739655 + MLT1D LTR MaLR 1 505 0 21 36 0 0 chrX 31860440 31860468 -130739462 + AT_rich Low_complexity Low_complexity 1 28 0 320 232 11 74 chrX 31860760 31860855 -130739075 + MIR SINE MIR 101 189 -73 228 207 27 162 chrX 31861251 31861362 -130738568 - MLT1K LTR MaLR -108 480 385 474 319 25 0 chrX 31861364 31861521 -130738409 - MIR SINE MIR -94 168 8 297 282 16 73 chrX 31861616 31861740 -130738190 - MLT1K LTR MaLR -276 312 196 778 308 23 0 chrX 31861819 31862040 -130737890 + MIR SINE MIR 13 238 -24 2959 171 6 6 chrX 31863542 31864181 -130735749 - MER50 LTR ERV1 -23 711 1 238 118 0 0 chrX 31865878 31865912 -130734018 - MSTA-int LTR MaLR -1616 35 2 2557 129 49 7 chrX 31865913 31866324 -130733606 - MSTA LTR MaLR 0 428 1 1350 123 15 0 chrX 31866328 31866532 -130733398 - MLT2B1 LTR ERVL -311 209 3 538 319 123 74 chrX 31867168 31867427 -130732503 - HAL1 LINE L1 -1130 1377 1132 2300 97 0 0 chrX 31867427 31867727 -130732203 + AluSx SINE Alu 1 300 -12 538 319 123 74 chrX 31867727 31868436 -130731494 - HAL1 LINE L1 -1375 1132 362 3684 200 54 23 chrX 31868442 31868458 -130731472 - L1MB5 LINE L1 -8 6166 6152 1416 251 25 19 chrX 31868458 31868821 -130731109 - MLT1A1 LTR MaLR 0 365 1 3684 200 54 23 chrX 31868821 31870351 -130729579 - L1MB5 LINE L1 -22 6152 4572 1043 162 21 1 chrX 31870364 31870537 -130729393 + L1MC2 LINE L1 5440 5588 -756 1695 162 33 0 chrX 31870537 31870809 -130729121 + AluJb SINE Alu 1 281 -31 1043 162 21 1 chrX 31870809 31870837 -130729093 + L1MC2 LINE L1 5588 5614 -730 278 179 0 30 chrX 31870837 31870904 -130729026 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 3466 174 51 7 chrX 31870908 31871615 -130728315 + L1MC2 LINE L1 5603 6340 -4 284 250 73 52 chrX 31872015 31872111 -130727819 - MIR SINE MIR -86 122 25 330 238 0 0 chrX 31872258 31872321 -130727609 - MIR SINE MIR -37 225 163 337 300 59 46 chrX 31872716 31873019 -130726911 + HAL1b LINE L1 100 406 -942 34 79 0 0 chrX 31873329 31873405 -130726525 + AT_rich Low_complexity Low_complexity 1 76 0 248 387 134 0 chrX 31873554 31873673 -130726257 + L2 LINE L2 3134 3268 -4 568 203 148 28 chrX 31874600 31874782 -130725148 - LTR16C LTR ERVL -9 482 279 1628 151 37 95 chrX 31874821 31875282 -130724648 - MER31A LTR ERV1 -28 438 1 677 278 31 21 chrX 31875282 31875471 -130724459 - LTR16C LTR ERVL -220 271 81 463 16 0 0 chrX 31876266 31876327 -130723603 - L1PA2 LINE L1 -1 6154 6094 2020 225 38 61 chrX 31876609 31877235 -130722695 - LTR9 LTR ERV1 0 612 1 387 241 111 62 chrX 31877722 31877884 -130722046 - MER91A DNA MER1_type -26 170 1 21 0 0 0 chrX 32080674 32080695 -130519235 + AT_rich Low_complexity Low_complexity 1 21 0 2312 114 0 0 chrX 32080817 32081123 -130518807 - AluSx SINE Alu -6 306 1 272 318 68 23 chrX 32081743 32081875 -130518055 - MIR3 SINE MIR -10 198 61 266 212 273 0 chrX 32081898 32081964 -130517966 - MIR SINE MIR -10 252 169 498 289 57 26 chrX 32082103 32082331 -130517599 - MLT1J1 LTR MaLR -141 305 71 259 316 152 19 chrX 32083381 32083539 -130516391 - MIR SINE MIR -64 198 20 2562 77 0 0 chrX 32083610 32083923 -130516007 + AluSp SINE Alu 1 313 0 773 174 0 0 chrX 32083961 32084093 -130515837 - MER68 LTR ERV1 -7 555 424 991 273 67 38 chrX 32084995 32085077 -130514853 - L2 LINE L2 -1 3312 3234 2116 91 26 42 chrX 32085077 32085385 -130514545 + AluSx SINE Alu 1 303 -9 991 273 67 38 chrX 32085385 32085719 -130514211 - L2 LINE L2 -79 3234 2884 233 54 0 54 chrX 32085870 32085907 -130514023 - L1MB1 LINE L1 -87 6081 6047 1944 96 57 21 chrX 32085907 32086188 -130513742 + AluSx SINE Alu 1 291 -21 2297 99 3 0 chrX 32086188 32086482 -130513448 + AluSg SINE Alu 1 295 -15 4156 173 18 2 chrX 32086504 32087390 -130512540 - L1MB1 LINE L1 -112 6056 5156 1387 191 8 3 chrX 32087685 32088184 -130511746 - MER68 LTR ERV1 -7 555 1 1038 211 76 63 chrX 32088966 32089346 -130510584 - MLT1B LTR MaLR 0 390 6 460 281 121 17 chrX 32089791 32090022 -130509908 + MIR SINE MIR 2 256 -6 207 139 0 0 chrX 32090994 32091030 -130508900 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 2376 36 0 0 chrX 32091210 32091488 -130508442 + L1PA4 LINE L1 5864 6141 -14 726 206 0 78 chrX 32091665 32091908 -130508022 - L1MC5 LINE L1 -1003 6958 6735 305 205 179 27 chrX 32091966 32092078 -130507852 - L1ME4a LINE L1 -2 6119 5991 645 269 103 0 chrX 32093055 32093211 -130506719 + MER5A DNA MER1_type 7 178 -11 1957 178 151 14 chrX 32093810 32094254 -130505676 - MLT1D LTR MaLR 0 505 1 1961 119 0 0 chrX 32095068 32095328 -130504602 - AluSg SINE Alu -13 297 38 2080 84 66 31 chrX 32096070 32096356 -130503574 - AluSq SINE Alu -17 296 1 2181 109 3 0 chrX 32096586 32096879 -130503051 + AluSx SINE Alu 1 294 -18 356 332 20 40 chrX 32097360 32097610 -130502320 - L1MC4a LINE L1 -892 6916 6672 665 239 23 11 chrX 32097881 32098057 -130501873 - MER5B DNA MER1_type 0 178 1 201 158 0 26 chrX 32098683 32098721 -130501209 + CT-rich Low_complexity Low_complexity 3 39 0 199 326 0 0 chrX 32098937 32098983 -130500947 + MER5A DNA MER1_type 144 189 0 583 226 175 0 chrX 32099257 32099394 -130500536 - MER5A DNA MER1_type -7 182 22 585 217 0 121 chrX 32099410 32099562 -130500368 - MER5B DNA MER1_type -3 175 51 2127 115 7 0 chrX 32099562 32099857 -130500073 + AluSx SINE Alu 2 298 -14 585 217 0 121 chrX 32099857 32099902 -130500028 - MER5B DNA MER1_type -127 51 2 1145 269 46 39 chrX 32100492 32100953 -130498977 - LTR16B LTR ERVL 0 464 1 293 325 58 25 chrX 32102397 32102517 -130497413 + L2 LINE L2 3149 3272 0 * 356 321 37 22 chrX 32102515 32102649 -130497281 + MIR SINE MIR 6 141 -121 2155 107 11 0 chrX 32102892 32103206 -130496724 - AluSx SINE Alu 0 317 1 337 213 40 13 chrX 32103316 32103391 -130496539 + L2 LINE L2 3193 3269 -44 616 173 0 0 chrX 32104541 32104651 -130495279 - Tigger3(Golem) DNA MER2_type -1 3028 2919 534 228 18 110 chrX 32104756 32104868 -130495062 - LTR16A1 LTR ERVL -39 418 334 488 252 28 0 chrX 32104868 32104975 -130494955 + MER81 DNA DNA 5 114 0 534 228 18 110 chrX 32104975 32105081 -130494849 - LTR16A1 LTR ERVL -123 334 220 1095 213 49 67 chrX 32105332 32105722 -130494208 - MLT1B LTR MaLR 0 390 8 1708 220 26 46 chrX 32107068 32107527 -130492403 - LTR16A LTR ERVL 0 450 1 206 208 57 0 chrX 32107935 32107988 -130491942 - L2 LINE L2 -624 2690 2635 388 247 143 7 chrX 32108049 32108203 -130491727 + MER96 DNA MER1_type 1 175 0 485 208 71 54 chrX 32108318 32108486 -130491444 - L2 LINE L2 -208 3105 2935 1010 156 21 5 chrX 32109602 32109788 -130490142 - MER5A DNA MER1_type 0 189 1 736 255 82 50 chrX 32110007 32110787 -130489143 - L1ME4a LINE L1 -104 6017 5221 23 33 0 0 chrX 32111445 32111475 -130488455 + AT_rich Low_complexity Low_complexity 1 30 0 2288 108 3 0 chrX 32111480 32111775 -130488155 + AluSx SINE Alu 2 297 -15 346 266 131 84 chrX 32112805 32113256 -130486674 - LTR67 LTR ERVL 0 557 86 253 253 103 0 chrX 32113316 32113403 -130486527 + MIR SINE MIR 166 261 -1 449 265 135 71 chrX 32113652 32113760 -130486170 - MER5A DNA MER1_type 0 189 65 2166 117 3 16 chrX 32113760 32114068 -130485862 - AluSx SINE Alu -8 304 1 449 265 135 71 chrX 32114068 32114129 -130485801 - MER5A DNA MER1_type -124 65 9 364 353 19 32 chrX 32114589 32114745 -130485185 + MIR3 SINE MIR 4 157 -51 283 302 71 18 chrX 32114746 32114915 -130485015 + MER117 DNA MER1_type 2 179 -18 298 271 68 42 chrX 32114961 32115079 -130484851 - L2 LINE L2 -1 3271 3151 243 310 14 0 chrX 32115076 32115147 -130484783 - MIR3 SINE MIR -3 205 134 * 2291 91 0 0 chrX 32115155 32115473 -130484457 - AluSx SINE Alu 0 318 1 1007 133 0 111 chrX 32115575 32115665 -130484265 - MER3 DNA MER1_type 0 209 111 2252 95 0 7 chrX 32115665 32115981 -130483949 + AluSx SINE Alu 1 314 0 1007 133 0 111 chrX 32115981 32116123 -130483807 - MER3 DNA MER1_type -98 111 2 823 143 50 11 chrX 32116702 32116884 -130483046 - MER53 DNA DNA 0 189 1 505 295 99 56 chrX 32116995 32117337 -130482593 + L2 LINE L2 2943 3299 -14 411 269 70 43 chrX 32117348 32117534 -130482396 + MIR SINE MIR 2 192 -70 209 325 81 16 chrX 32117613 32117736 -130482194 + MIR SINE MIR 106 236 -26 5592 156 25 6 chrX 32117874 32118659 -130481271 - L1MA7 LINE L1 -426 5865 5096 2139 124 36 30 chrX 32118659 32119021 -130480909 + THE1B LTR MaLR 1 364 0 5592 156 25 6 chrX 32119021 32119826 -130480104 - L1MA7 LINE L1 -1195 5096 4249 2522 123 21 14 chrX 32119826 32120248 -130479682 + L1MA7 LINE L1 5858 6289 -2 276 228 114 65 chrX 32120326 32120449 -130479481 + MIR SINE MIR 124 252 -10 2092 114 7 13 chrX 32123185 32123484 -130476446 + AluSx SINE Alu 1 297 -15 2257 131 0 3 chrX 32123504 32123817 -130476113 - AluSx SINE Alu 0 312 1 323 394 0 78 chrX 32124241 32124421 -130475509 + MER91A DNA MER1_type 1 166 -30 1362 200 40 84 chrX 32125274 32125750 -130474180 + LTR16A1 LTR ERVL 1 455 -2 1619 83 46 0 chrX 32126165 32126382 -130473548 + MER30 DNA MER1_type 1 227 -3 1120 148 28 0 chrX 32126396 32126578 -130473352 - MER5A DNA MER1_type -2 187 1 419 258 275 17 chrX 32126685 32126863 -130473067 + MIR SINE MIR 31 254 -8 4503 168 161 20 chrX 32127341 32128361 -130471569 - Charlie1 DNA MER1_type 0 2761 1551 2275 105 0 0 chrX 32128361 32128657 -130471273 - AluSx SINE Alu -16 296 1 4503 168 161 20 chrX 32128657 32128819 -130471111 - Charlie1 DNA MER1_type -1210 1551 1413 2212 124 0 0 chrX 32128973 32129271 -130470659 - AluSx SINE Alu -14 298 1 567 268 19 56 chrX 32129434 32129647 -130470283 - L2 LINE L2 -18 3295 3091 243 266 119 29 chrX 32129655 32129774 -130470156 - MER5A DNA MER1_type -2 187 29 253 329 13 0 chrX 32129788 32129864 -130470066 - L2 LINE L2 -238 3075 2999 615 344 17 9 chrX 32130439 32130669 -130469261 - L2 LINE L2 -338 2976 2745 1374 166 87 67 chrX 32130972 32131407 -130468523 + LTR56 LTR ERV1 1 444 -1 415 297 143 11 chrX 32131454 32131629 -130468301 + MIR SINE MIR 58 255 -7 1500 167 52 7 chrX 32132352 32132622 -130467308 + AluJo SINE Alu 9 290 -22 234 256 23 35 chrX 32132747 32132833 -130467097 + MIR SINE MIR 172 256 -6 586 228 10 67 chrX 32133594 32133669 -130466261 + L1ME3 LINE L1 5455 5533 -637 2370 78 3 13 chrX 32133669 32133977 -130465953 - AluY SINE Alu -6 305 1 586 228 10 67 chrX 32133977 32134094 -130465836 + L1ME3 LINE L1 5533 5636 -534 267 255 59 0 chrX 32134092 32134194 -130465736 + L1ME3 LINE L1 6053 6160 -2 * 1765 180 13 45 chrX 32134726 32135103 -130464827 - MLT1A1 LTR MaLR 0 365 1 522 250 58 19 chrX 32135333 32135726 -130464204 + LTR16B LTR ERVL 8 459 -5 298 257 0 0 chrX 32135758 32135832 -130464098 + HERV16 LTR ERVL 105 178 -4818 3477 348 42 10 chrX 32135846 32138162 -130461768 + HERV16 LTR ERVL 2867 5250 -235 307 319 7 7 chrX 32138184 32138319 -130461611 + HERV16 LTR ERVL 4856 4990 -6 956 259 79 61 chrX 32138323 32138779 -130461151 + LTR16B LTR ERVL 1 464 0 24 0 0 0 chrX 32139708 32139732 -130460198 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 32140790 32140821 -130459109 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chrX 32141060 32141090 -130458840 + AT_rich Low_complexity Low_complexity 1 30 0 404 283 0 0 chrX 32141387 32141493 -130458437 + MER5C DNA MER1_type 13 118 -206 319 183 0 61 chrX 32141636 32141718 -130458212 + MER5C DNA MER1_type 248 324 0 1129 197 22 18 chrX 32141726 32141949 -130457981 + MER58A DNA MER1_type 1 224 0 2544 42 3 6 chrX 32141971 32142283 -130457647 - AluY SINE Alu 0 311 1 560 269 41 12 chrX 32142301 32142543 -130457387 + MER112 DNA MER1_type 12 260 0 27 29 0 0 chrX 32142567 32142601 -130457329 + AT_rich Low_complexity Low_complexity 1 34 0 915 209 25 10 chrX 32143170 32143371 -130456559 + MER63A DNA MER1_type 1 204 -6 3038 197 7 68 chrX 32143471 32143794 -130456136 + MER82 DNA MER2_type 2 262 -391 2437 80 0 3 chrX 32143794 32144106 -130455824 + AluY SINE Alu 1 311 0 3038 197 7 68 chrX 32144106 32144476 -130455454 + MER82 DNA MER2_type 262 653 0 3318 106 23 4 chrX 32144509 32145021 -130454909 - L1MA4 LINE L1 -6 6294 5773 5168 129 10 23 chrX 32145030 32146050 -130453880 - L1PA16 LINE L1 -10 6156 5130 2119 97 30 17 chrX 32146050 32146348 -130453582 - AluSq SINE Alu -11 302 1 5168 129 10 23 chrX 32146348 32146983 -130452947 - L1PA16 LINE L1 -1036 5130 4488 7062 150 15 19 chrX 32147026 32147818 -130452112 - L1MA4 LINE L1 -516 5784 4990 1528 146 100 43 chrX 32147818 32148098 -130451832 - AluJo SINE Alu -16 296 1 7062 150 15 19 chrX 32148098 32149140 -130450790 - L1MA4 LINE L1 -1310 4990 3954 1251 243 39 99 chrX 32149646 32150160 -130449770 + LTR33 LTR ERVL 36 518 -3 1167 270 108 35 chrX 32150269 32151322 -130448608 - L1MC5 LINE L1 -859 7102 5860 306 0 0 0 chrX 32151322 32151356 -130448574 + (TG)n Simple_repeat Simple_repeat 2 35 0 1167 270 108 35 chrX 32151356 32151921 -130448009 - L1MC5 LINE L1 -2101 5860 5338 658 329 36 47 chrX 32151971 32152464 -130447466 - LTR16C LTR ERVL 0 491 4 331 217 0 0 chrX 32153289 32153349 -130446581 - MER81 DNA DNA -2 112 53 530 137 59 39 chrX 32153473 32153575 -130446355 - MER5A DNA MER1_type -77 112 9 2301 95 0 0 chrX 32153663 32153957 -130445973 - AluSx SINE Alu -5 307 14 411 75 0 0 chrX 32154027 32154080 -130445850 - Alu SINE Alu -257 53 1 204 182 0 0 chrX 32154976 32155020 -130444910 + (TA)n Simple_repeat Simple_repeat 1 44 0 29 0 0 0 chrX 32155076 32155105 -130444825 + AT_rich Low_complexity Low_complexity 1 29 0 1470 203 57 21 chrX 32155512 32155926 -130444004 - L1ME1 LINE L1 -8 6158 5736 21 36 0 0 chrX 32156085 32156113 -130443817 + AT_rich Low_complexity Low_complexity 1 28 0 596 174 35 0 chrX 32157196 32157311 -130442619 - MER94 DNA DNA -14 120 2 2356 84 0 19 chrX 32157410 32157719 -130442211 - AluSq SINE Alu -10 303 1 642 273 28 17 chrX 32157790 32157966 -130441964 + MER5B DNA MER1_type 1 178 0 574 296 80 11 chrX 32160200 32160662 -130439268 + L1MEc LINE L1 1257 1750 -4646 598 228 120 46 chrX 32160814 32161055 -130438875 - LTR50 LTR ERVL -150 645 387 2575 161 9 0 chrX 32161202 32161630 -130438300 - MSTB1 LTR MaLR 0 432 1 6256 210 16 6 chrX 32161630 32162891 -130437039 - MSTB1-int LTR MaLR 0 1651 375 1022 47 0 0 chrX 32162891 32163020 -130436910 + L1PA4 LINE L1 6024 6152 -3 477 214 9 0 chrX 32163105 32163217 -130436713 - MER58A DNA MER1_type -17 207 95 234 216 0 0 chrX 32163249 32163300 -130436630 - MER58A DNA MER1_type -9 98 48 2058 174 3 0 chrX 32163310 32163683 -130436247 - MSTB1-int LTR MaLR -1277 374 1 309 115 0 19 chrX 32163683 32163735 -130436195 - MLT2B3 LTR ERVL 0 520 470 1714 183 25 109 chrX 32163772 32164343 -130435587 - MLT2B3 LTR ERVL -40 508 1 589 159 127 0 chrX 32164345 32164471 -130435459 - LTR50 LTR ERVL -649 146 5 419 332 220 15 chrX 32165580 32166525 -130433405 + L2 LINE L2 1623 2761 -553 657 289 68 25 chrX 32167387 32167622 -130432308 - MIR SINE MIR -15 247 3 1405 258 143 15 chrX 32167648 32168109 -130431821 + MLT1E LTR MaLR 11 530 -63 22 35 0 0 chrX 32168109 32168138 -130431792 + AT_rich Low_complexity Low_complexity 1 29 0 1500 126 142 0 chrX 32168162 32168408 -130431522 - AluSx SINE Alu -27 285 5 543 252 9 0 chrX 32169215 32169326 -130430604 - MER81 DNA DNA -2 112 1 233 255 0 0 chrX 32169748 32169795 -130430135 - L3 LINE CR1 -13 1564 1518 402 213 37 19 chrX 32169898 32170006 -130429924 + MER103 DNA DNA 3 112 -54 279 213 27 27 chrX 32170012 32170087 -130429843 + MER5B DNA MER1_type 21 95 -83 2086 158 10 7 chrX 32170142 32170553 -130429377 - L1MA8 LINE L1 -1316 4830 4419 * 5401 126 51 20 chrX 32170547 32171275 -130428655 + L1MA8 LINE L1 4852 5556 -735 2285 93 0 13 chrX 32171275 32171587 -130428343 + AluSc SINE Alu 1 308 -1 5401 126 51 20 chrX 32171587 32172247 -130427683 + L1MA8 LINE L1 5556 6291 0 1907 158 7 0 chrX 32172250 32172541 -130427389 + AluJb SINE Alu 1 293 -19 246 250 0 28 chrX 32172573 32172645 -130427285 + MER103 DNA DNA 91 160 -6 252 167 0 0 chrX 32172652 32172700 -130427230 + CT-rich Low_complexity Low_complexity 1 48 0 844 213 44 41 chrX 32172848 32173163 -130426767 - L1MC5 LINE L1 -35 7926 7611 229 231 15 15 chrX 32173166 32173231 -130426699 - L1M4 LINE L1 -1584 4562 4498 420 261 0 0 chrX 32173415 32173524 -130426406 - L1ME2 LINE L1 -3 6331 6061 240 224 0 0 chrX 32173526 32173575 -130426355 - L1ME2 LINE L1 -55 6109 6061 679 316 68 42 chrX 32174468 32174851 -130425079 - LTR16C LTR ERVL 0 491 99 363 334 102 39 chrX 32175148 32175480 -130424450 + L2 LINE L2 2920 3272 0 1053 223 25 0 chrX 32175610 32175852 -130424078 - MER90 LTR ERV1 0 614 367 610 316 14 5 chrX 32175880 32176098 -130423832 - MER90 LTR ERV1 -386 228 9 373 370 39 0 chrX 32176642 32176769 -130423161 - L2 LINE L2 -5 3267 3136 685 209 329 59 chrX 32176939 32177113 -130422817 - L1MC4 LINE L1 0 8042 7916 3386 85 17 0 chrX 32177113 32177586 -130422344 - L1PB1 LINE L1 0 6151 5671 685 209 329 59 chrX 32177586 32177870 -130422060 - L1MC4 LINE L1 -126 7916 7460 719 222 58 62 chrX 32178903 32179160 -130420770 - MIR SINE MIR 0 262 7 714 172 0 23 chrX 32180922 32181050 -130418880 + FLAM_A SINE Alu 3 127 -6 791 255 81 13 chrX 32181180 32181415 -130418515 - MIR SINE MIR -9 253 3 860 283 78 62 chrX 32181475 32182123 -130417807 + L2 LINE L2 2623 3267 -5 191 331 206 25 chrX 32182172 32182332 -130417598 - L2 LINE L2 -218 3054 2866 279 0 0 0 chrX 32182807 32182838 -130417092 + (CA)n Simple_repeat Simple_repeat 2 32 0 436 194 42 0 chrX 32185513 32185678 -130414252 + (GGGTG)n Simple_repeat Simple_repeat 3 174 0 4845 162 19 10 chrX 32185845 32187536 -130412394 - L1PB4 LINE L1 -3 6153 4450 488 192 100 0 chrX 32187759 32187879 -130412051 - MER94 DNA DNA -2 132 1 502 342 86 5 chrX 32189201 32189423 -130410507 + MIR SINE MIR 14 253 -9 656 286 57 79 chrX 32189913 32190371 -130409559 - LTR16A1 LTR ERVL -2 455 8 619 191 17 0 chrX 32191167 32191282 -130408648 + MER20 DNA MER1_type 1 117 -102 272 65 0 87 chrX 32191506 32191552 -130408378 + MER20 DNA MER1_type 178 219 0 1691 208 76 48 chrX 32191562 32192037 -130407893 - LTR16C LTR ERVL 0 491 4 484 296 13 19 chrX 32192197 32192356 -130407574 - L3 LINE CR1 -21 1556 1399 812 276 46 14 chrX 32192370 32192587 -130407343 + MIR SINE MIR 35 258 -4 317 287 0 50 chrX 32193429 32193530 -130406400 + L1MC4 LINE L1 6608 6703 -1339 * 354 253 23 0 chrX 32193453 32193540 -130406390 - L1MC4 LINE L1 -1340 6702 6614 192 40 0 0 chrX 32193542 32193567 -130406363 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 32194582 32194604 -130405326 + AT_rich Low_complexity Low_complexity 1 22 0 626 290 0 6 chrX 32195327 32195496 -130404434 + LTR16A LTR ERVL 13 180 -270 1067 241 38 73 chrX 32195530 32195925 -130404005 + L2 LINE L2 2933 3313 0 206 250 0 23 chrX 32196019 32196063 -130403867 + MIR SINE MIR 7 49 -213 944 223 67 5 chrX 32196079 32196303 -130403627 - MIR SINE MIR -10 252 15 420 344 88 18 chrX 32196247 32196474 -130403456 + MIR SINE MIR 19 261 -1 * 1325 253 8 83 chrX 32196903 32197114 -130402816 + LTR16A LTR ERVL 16 241 -209 6129 78 24 20 chrX 32197114 32197974 -130401956 + L1PB1 LINE L1 4912 5768 -383 405 0 0 0 chrX 32197974 32198019 -130401911 + (TA)n Simple_repeat Simple_repeat 2 46 0 6129 78 24 20 chrX 32198019 32198264 -130401666 + L1PB1 LINE L1 5768 6023 -128 2138 93 41 3 chrX 32198264 32198554 -130401376 + AluSx SINE Alu 1 301 -11 6129 78 24 20 chrX 32198554 32198683 -130401247 + L1PB1 LINE L1 6023 6150 -1 1325 253 8 83 chrX 32198683 32198941 -130400989 + LTR16A LTR ERVL 241 450 0 2105 100 0 28 chrX 32199638 32199971 -130399959 + AluSx SINE Alu 1 325 0 440 207 118 37 chrX 32200855 32200990 -130398940 + MER5A DNA MER1_type 43 188 -1 1358 188 49 36 chrX 32201223 32201552 -130398378 + LTR16A1 LTR ERVL 68 400 -57 3617 143 60 23 chrX 32201552 32201832 -130398098 + L1MA9 LINE L1 5494 5762 -550 390 21 0 0 chrX 32201832 32201879 -130398051 + (CA)n Simple_repeat Simple_repeat 2 48 0 3617 143 60 23 chrX 32201879 32202333 -130397597 + L1MA9 LINE L1 5762 6255 -57 416 345 42 45 chrX 32202412 32202699 -130397231 + L1MDa LINE L1 2 287 -6253 3848 208 77 58 chrX 32203292 32203610 -130396320 + L1MDa LINE L1 909 1220 -5320 1175 83 6 0 chrX 32203610 32203778 -130396152 + L1MA3 LINE L1 6132 6300 -5 3848 208 77 58 chrX 32203778 32205300 -130394630 + L1MDa LINE L1 1220 2733 -3807 278 257 69 50 chrX 32205652 32205753 -130394177 + MIR SINE MIR 146 248 -14 276 286 143 0 chrX 32207415 32207548 -130392382 + MER117 DNA MER1_type 46 197 0 5983 101 26 1 chrX 32209151 32210174 -130389756 + L1PA15 LINE L1 5120 6164 -1 1195 230 28 62 chrX 32210781 32210925 -130389005 + LTR16C LTR ERVL 146 293 -198 1117 196 48 104 chrX 32210925 32211282 -130388648 - MER58B DNA MER1_type -4 337 1 1195 230 28 62 chrX 32211282 32211362 -130388568 + LTR16C LTR ERVL 293 374 -117 2162 151 0 0 chrX 32211362 32211673 -130388257 - AluJb SINE Alu -1 311 1 1195 230 28 62 chrX 32211673 32211803 -130388127 + LTR16C LTR ERVL 374 489 -2 7190 105 39 8 chrX 32211913 32213084 -130386846 - Tigger3b DNA MER2_type 0 1231 24 249 33 0 0 chrX 32214852 32214882 -130385048 + (CA)n Simple_repeat Simple_repeat 2 31 0 268 255 98 36 chrX 32215782 32215920 -130384010 + L1ME LINE L1 5669 5818 -303 367 202 36 12 chrX 32216932 32217016 -130382914 - MIR3 SINE MIR -1 207 122 1347 153 37 29 chrX 32217033 32217275 -130382655 + AluJo SINE Alu 46 289 -23 2122 136 3 3 chrX 32217308 32217618 -130382312 - AluSx SINE Alu -2 310 1 22 0 0 0 chrX 32217618 32217640 -130382290 + AT_rich Low_complexity Low_complexity 1 22 0 2625 94 3 0 chrX 32217673 32218025 -130381905 - THE1A LTR MaLR -2 353 1 2189 104 0 57 chrX 32218611 32218927 -130381003 - AluSx SINE Alu -14 298 1 477 47 0 0 chrX 32219217 32219281 -130380649 + (TG)n Simple_repeat Simple_repeat 1 64 0 2058 186 104 90 chrX 32219818 32220472 -130379458 - MLT2F LTR ERVL 0 663 1 1629 254 90 35 chrX 32220677 32221241 -130378689 + MLT1G1 LTR MaLR 1 595 0 6951 26 0 0 chrX 32221395 32222241 -130377689 - L1PA3 LINE L1 -2 6153 5308 3735 43 0 0 chrX 32222242 32222727 -130377203 + L1PA3 LINE L1 4802 5286 -860 1546 154 42 14 chrX 32222727 32223013 -130376917 - L1MD2 LINE L1 0 6359 6066 703 165 35 0 chrX 32223013 32223128 -130376802 + FLAM_C SINE Alu 3 121 -22 2442 176 51 41 chrX 32223153 32223717 -130376213 - L1MD1 LINE L1 -165 6077 5508 444 244 17 17 chrX 32224381 32224500 -130375430 - Charlie8 DNA MER1_type -2156 261 143 1136 232 73 6 chrX 32224774 32225101 -130374829 + L1ME2 LINE L1 5305 5653 -509 1655 109 10 58 chrX 32225352 32225646 -130374284 - L1PA13 LINE L1 -3 6160 5881 5771 63 6 4 chrX 32225668 32226457 -130373473 - L1PB1 LINE L1 0 6151 5361 421 171 0 0 chrX 32226457 32226545 -130373385 + L1P LINE L1 5218 5305 -841 * 1796 174 73 59 chrX 32226540 32226858 -130373072 + L1ME2 LINE L1 5625 5954 -210 1706 171 39 0 chrX 32226858 32226978 -130372952 + AluJb SINE Alu 1 115 -197 351 0 0 0 chrX 32226978 32227017 -130372913 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1706 171 39 0 chrX 32227017 32227176 -130372754 + AluJb SINE Alu 115 291 -21 1796 174 73 59 chrX 32227176 32227379 -130372551 + L1ME2 LINE L1 5954 6153 -11 529 309 100 22 chrX 32227624 32227854 -130372076 + MIR SINE MIR 2 249 -13 2255 52 6 0 chrX 32228347 32228821 -130371109 - L1PA5 LINE L1 -597 5557 5081 5084 38 2 0 chrX 32228821 32229426 -130370504 + L1PA5 LINE L1 5547 6153 -1 25 31 0 0 chrX 32230010 32230042 -130369888 + AT_rich Low_complexity Low_complexity 1 32 0 30 59 0 0 chrX 32230259 32230310 -130369620 + AT_rich Low_complexity Low_complexity 1 51 0 258 56 0 0 chrX 32230430 32230466 -130369464 + (TG)n Simple_repeat Simple_repeat 1 36 0 744 31 0 20 chrX 32231161 32231259 -130368671 + L1PA8 LINE L1 6073 6168 -4 215 279 0 0 chrX 32232069 32232130 -130367800 + (CAT)n Simple_repeat Simple_repeat 3 63 0 246 62 0 0 chrX 32232973 32233005 -130366925 + (A)n Simple_repeat Simple_repeat 1 32 0 372 22 0 0 chrX 32233934 32233979 -130365951 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 10724 34 0 0 chrX 32234768 32236124 -130363806 - L1PA3 LINE L1 -1711 4435 3080 8099 23 0 0 chrX 32236124 32237840 -130362090 + L1PA3 LINE L1 4434 6148 -7 431 202 18 2 chrX 32237952 32238115 -130361815 + MER58A DNA MER1_type 25 223 -1 1171 189 23 14 chrX 32238183 32238400 -130361530 - MER20 DNA MER1_type 0 219 1 282 320 20 0 chrX 32240174 32240274 -130359656 - LTR67 LTR ERVL -368 189 88 * 1370 193 34 14 chrX 32240270 32240566 -130359364 - MLT2B3 LTR ERVL -252 302 1 812 283 94 54 chrX 32240567 32240783 -130359147 - MLT1G1 LTR MaLR -25 570 364 1373 204 136 5 chrX 32240783 32241195 -130358735 + MER110A LTR ERV1 3 468 0 812 283 94 54 chrX 32241195 32241484 -130358446 - MLT1G1 LTR MaLR -231 364 1 867 107 14 158 chrX 32241493 32241708 -130358222 - MER6 DNA MER2_type -9 856 673 1242 51 6 0 chrX 32241710 32241868 -130358062 + L1PA6 LINE L1 5987 6145 -9 2438 90 3 0 chrX 32242099 32242411 -130357519 - AluSp SINE Alu 0 313 1 226 187 93 67 chrX 32242556 32242631 -130357299 - L2 LINE L2 -8 3264 3188 907 287 46 51 chrX 32244171 32244328 -130355602 - L1MC4a LINE L1 -1871 5937 5781 2250 89 3 52 chrX 32244328 32244653 -130355277 - AluSg SINE Alu -1 309 1 907 287 46 51 chrX 32244653 32244930 -130355000 - L1MC4a LINE L1 -2027 5781 5505 1140 120 66 46 chrX 32245877 32245969 -130353961 + L1MB3 LINE L1 5938 6027 -156 2009 114 3 31 chrX 32245969 32246282 -130353648 - AluSg SINE Alu 0 305 1 1140 120 66 46 chrX 32246282 32246429 -130353501 + L1MB3 LINE L1 6027 6183 0 362 284 53 11 chrX 32246492 32246587 -130353343 - MIR SINE MIR -110 152 54 397 250 9 56 chrX 32246657 32246765 -130353165 + MIR3 SINE MIR 71 173 -35 263 177 81 0 chrX 32246765 32246827 -130353103 + MER112 DNA MER1_type 13 79 -181 246 62 0 0 chrX 32246827 32246859 -130353071 + (CCA)n Simple_repeat Simple_repeat 1 32 0 917 285 25 28 chrX 32246867 32247190 -130352740 - LTR16A1 LTR ERVL 0 457 136 632 221 0 22 chrX 32247198 32247334 -130352596 + MLT1F1 LTR MaLR 1 133 -409 1781 220 47 22 chrX 32247371 32247816 -130352114 + MLT1F1 LTR MaLR 110 565 -2 304 241 177 0 chrX 32247984 32248125 -130351805 + MER112 DNA MER1_type 90 255 -5 513 223 84 8 chrX 32248192 32248372 -130351558 - MIR SINE MIR 0 262 26 351 0 0 0 chrX 32249758 32249797 -130350133 + (TG)n Simple_repeat Simple_repeat 2 40 0 5224 126 12 1 chrX 32249862 32251299 -130348631 - L1MA3 LINE L1 -270 6035 4585 1840 108 7 3 chrX 32251463 32251759 -130348171 + HERVH LTR ERV1 7417 7713 0 1576 101 45 10 chrX 32251759 32252110 -130347820 + LTR7 LTR ERV1 1 412 -38 1753 234 87 24 chrX 32252170 32252675 -130347255 - MLT1H LTR MaLR 0 549 13 302 221 46 119 chrX 32252925 32253081 -130346849 - LTR33A LTR ERVL -372 151 38 26 0 0 0 chrX 32253614 32253640 -130346290 + AT_rich Low_complexity Low_complexity 1 26 0 620 228 76 6 chrX 32253908 32254066 -130345864 + L2 LINE L2 3145 3313 0 317 241 73 29 chrX 32254080 32254217 -130345713 - L1MC/D LINE L1 -2053 5755 5613 458 224 39 6 chrX 32255029 32255185 -130344745 - L1ME4a LINE L1 -1 6120 5960 488 282 68 18 chrX 32255474 32255637 -130344293 + MER5B DNA MER1_type 1 171 -7 337 344 9 23 chrX 32255650 32255865 -130344065 + L2 LINE L2 2546 2757 -557 2610 130 16 37 chrX 32255959 32256396 -130343534 - MSTC LTR MaLR 0 428 1 1134 285 84 33 chrX 32256603 32257079 -130342851 - L2 LINE L2 0 3313 2798 2220 122 0 0 chrX 32257079 32257374 -130342556 - AluSx SINE Alu -17 295 1 1134 285 84 33 chrX 32257374 32257577 -130342353 - L2 LINE L2 -515 2798 2607 218 324 106 28 chrX 32257628 32257807 -130342123 + L2 LINE L2 2758 2950 -364 1865 189 51 35 chrX 32257832 32258286 -130341644 - L1MB5 LINE L1 -15 6159 5699 1856 151 28 100 chrX 32258356 32258854 -130341076 - MLT1C LTR MaLR -5 462 1 284 289 8 58 chrX 32258858 32258979 -130340951 - MER5A DNA MER1_type -53 136 22 615 219 0 0 chrX 32258980 32259094 -130340836 - MER81 DNA DNA 0 114 1 451 288 59 12 chrX 32259574 32259744 -130340186 + MER5B DNA MER1_type 1 178 0 3248 143 28 5 chrX 32260164 32260744 -130339186 - L1MB7 LINE L1 -16 6168 5576 231 133 0 0 chrX 32261328 32261373 -130338557 + (CCTCG)n Simple_repeat Simple_repeat 5 49 0 255 31 0 0 chrX 32261543 32261575 -130338355 + (CCCCG)n Simple_repeat Simple_repeat 1 32 0 230 0 0 32 chrX 32261598 32261629 -130338301 + (CCG)n Simple_repeat Simple_repeat 1 30 0 306 73 0 0 chrX 32262651 32262692 -130337238 + (GGA)n Simple_repeat Simple_repeat 1 41 0 409 179 0 12 chrX 32263988 32264072 -130335858 - L1MB8 LINE L1 -1 6177 6095 3569 178 40 32 chrX 32264116 32265152 -130334778 - L1MB8 LINE L1 -75 6103 5058 312 214 54 0 chrX 32265211 32265267 -130334663 + L2 LINE L2 3246 3304 -9 2228 79 0 4 chrX 32265316 32265622 -130334308 - AluSc SINE Alu 0 305 1 1034 171 26 0 chrX 32265915 32266108 -130333822 + MER20 DNA MER1_type 3 200 -19 216 67 0 0 chrX 32266529 32266559 -130333371 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 23 33 0 0 chrX 32266781 32266811 -130333119 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 32267169 32267198 -130332732 + AT_rich Low_complexity Low_complexity 1 29 0 2718 97 6 0 chrX 32267290 32267652 -130332278 - THE1B LTR MaLR 0 364 1 4297 238 118 37 chrX 32267768 32269920 -130330010 - HAL1 LINE L1 -139 2368 1 591 58 0 23 chrX 32271080 32271167 -130328763 - L1PB4 LINE L1 -4 6152 6068 491 262 58 23 chrX 32271351 32271523 -130328407 - MER5B DNA MER1_type 0 178 1 342 310 35 28 chrX 32271732 32271874 -130328056 - MER5A DNA MER1_type -18 171 29 429 253 95 32 chrX 32273003 32273161 -130326769 + MIR SINE MIR 24 191 -71 200 274 0 0 chrX 32273244 32273295 -130326635 + L2 LINE L2 3263 3313 0 3550 161 38 1 chrX 32273519 32274185 -130325745 - L1MC3 LINE L1 -1 7784 7095 488 365 67 6 chrX 32274375 32274740 -130325190 + L1M4 LINE L1 4184 4570 -1576 2629 209 48 22 chrX 32274906 32275484 -130324446 + MLT1E LTR MaLR 1 593 0 225 316 102 0 chrX 32275491 32275735 -130324195 + L1M4 LINE L1 4758 5026 -1120 24 67 0 0 chrX 32275811 32275856 -130324074 + AT_rich Low_complexity Low_complexity 1 45 0 235 145 53 105 chrX 32275989 32276065 -130323865 - MER5C DNA MER1_type -252 72 1 1084 177 70 33 chrX 32276074 32276289 -130323641 - MER58A DNA MER1_type -1 223 1 842 126 116 5 chrX 32276443 32276633 -130323297 + MER33 DNA MER1_type 43 253 -71 215 381 37 0 chrX 32277189 32277323 -130322607 - L2 LINE L2 -846 2468 2330 2787 15 15 0 chrX 32277593 32277917 -130322013 + L1PA4 LINE L1 5827 6155 0 347 269 8 0 chrX 32278916 32279046 -130320884 + (TA)n Simple_repeat Simple_repeat 1 131 0 2096 92 35 21 chrX 32279392 32279676 -130320254 + AluSx SINE Alu 1 288 -24 1088 161 150 0 chrX 32280173 32280366 -130319564 + MER58A DNA MER1_type 2 223 -1 411 298 46 0 chrX 32280735 32280866 -130319064 - MIR SINE MIR -15 247 111 2658 63 22 17 chrX 32281335 32281697 -130318233 - THE1B LTR MaLR 0 364 1 211 367 25 0 chrX 32283316 32283395 -130316535 + L2 LINE L2 2971 3051 -221 481 254 202 48 chrX 32283533 32283805 -130316125 - L2 LINE L2 -3 3310 2997 2489 90 0 0 chrX 32284036 32284346 -130315584 - AluY SINE Alu 0 311 2 302 278 38 60 chrX 32284749 32284882 -130315048 - L1ME3A LINE L1 -36 6134 6005 679 240 173 8 chrX 32285022 32285497 -130314433 - L1ME3A LINE L1 -217 5947 5359 32 106 0 0 chrX 32285575 32285698 -130314232 + AT_rich Low_complexity Low_complexity 1 123 0 1845 173 62 37 chrX 32285707 32286133 -130313797 + MSTB1 LTR MaLR 1 375 0 1169 178 0 23 chrX 32287097 32287316 -130312614 + MER20 DNA MER1_type 6 219 0 435 214 0 0 chrX 32287475 32287559 -130312371 - L1ME1 LINE L1 -22 6213 6130 385 283 148 12 chrX 32289310 32289642 -130310288 - L1ME1 LINE L1 -195 5995 5619 258 224 79 0 chrX 32290124 32290200 -130309730 - L1ME1 LINE L1 -2316 3899 3818 1192 171 43 14 chrX 32290204 32290415 -130309515 - AluJo SINE Alu -12 300 84 3971 241 51 57 chrX 32290418 32291958 -130307972 - L1ME1 LINE L1 -2391 3824 2276 2296 120 120 5 chrX 32291958 32292341 -130307589 - MSTA LTR MaLR 0 428 2 3971 241 51 57 chrX 32292341 32292818 -130307112 - L1ME1 LINE L1 -3939 2276 1797 313 62 0 0 chrX 32292818 32292866 -130307064 - L1MA3 LINE L1 0 6305 6258 3971 241 51 57 chrX 32292866 32293454 -130306476 - L1ME1 LINE L1 -4418 1797 1256 2292 168 70 131 chrX 32293443 32293596 -130306334 - L1MC4a LINE L1 -1077 6731 6570 * 1736 197 49 21 chrX 32293596 32293981 -130305949 + MSTD LTR MaLR 1 396 0 2292 168 70 131 chrX 32293981 32294264 -130305666 - L1MC4a LINE L1 -1238 6570 6271 218 56 28 0 chrX 32294264 32294300 -130305630 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2292 168 70 131 chrX 32294300 32294771 -130305159 - L1MC4a LINE L1 -1537 6271 5878 534 203 6 80 chrX 32294818 32294981 -130304949 - L1MA9 LINE L1 -29 6283 6133 * 1013 228 39 17 chrX 32294978 32295287 -130304643 - L1MC4a LINE L1 -356 5818 5586 526 207 170 7 chrX 32296709 32296844 -130303086 + MER5A DNA MER1_type 32 188 -1 3259 207 5 15 chrX 32297183 32297841 -130302089 - MER82 DNA MER2_type -1 652 2 186 357 71 0 chrX 32298637 32298707 -130301223 + L2 LINE L2 3142 3216 -56 294 253 13 0 chrX 32299096 32299171 -130300759 + L1ME LINE L1 5785 5860 -310 456 253 106 46 chrX 32301778 32302138 -130297792 - MLT1H LTR MaLR -8 541 96 421 251 100 80 chrX 32302426 32302713 -130297217 + L1M4 LINE L1 5111 5427 -694 520 279 66 0 chrX 32302766 32302949 -130296981 - L2 LINE L2 -198 3115 2921 3652 159 68 9 chrX 32303061 32303871 -130296059 + L1MB7 LINE L1 5182 6037 -147 218 140 35 0 chrX 32303908 32303965 -130295965 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 6586 16 4 0 chrX 32303969 32304758 -130295172 - L1PA3 LINE L1 -3 6152 5361 13134 22 0 0 chrX 32304759 32306373 -130293557 + L1PA3 LINE L1 3745 5358 -788 662 272 23 0 chrX 32307547 32307720 -130292210 - MER5A DNA MER1_type -1 188 12 459 67 17 0 chrX 32308310 32308370 -130291560 + U7 snRNA snRNA 2 62 -1 26 0 0 0 chrX 32308376 32308402 -130291528 + AT_rich Low_complexity Low_complexity 1 26 0 31 68 0 0 chrX 32308679 32308738 -130291192 + AT_rich Low_complexity Low_complexity 1 59 0 355 285 218 14 chrX 32308807 32309238 -130290692 - L1ME4a LINE L1 -82 6039 5521 384 178 0 0 chrX 32309680 32309753 -130290177 + (TA)n Simple_repeat Simple_repeat 2 74 0 959 249 41 16 chrX 32310212 32310457 -130289473 - MIR SINE MIR -10 252 2 871 182 36 0 chrX 32310569 32310734 -130289196 + MER5B DNA MER1_type 7 177 -1 231 273 40 30 chrX 32311924 32312023 -130287907 - L1ME3A LINE L1 -106 6064 5965 3418 230 139 28 chrX 32312595 32314284 -130285646 - HAL1 LINE L1 -629 1878 3 402 296 216 5 chrX 32314359 32314558 -130285372 - MIR SINE MIR -12 250 10 22 0 0 0 chrX 32315801 32315823 -130284107 + AT_rich Low_complexity Low_complexity 1 22 0 405 237 149 9 chrX 32316007 32316137 -130283793 + MIR SINE MIR 3 150 -62 1129 195 43 17 chrX 32316241 32316472 -130283458 - MIR SINE MIR -17 245 9 1512 36 31 5 chrX 32316558 32316750 -130283180 + MER107 DNA MER1_type 1 197 0 711 184 163 11 chrX 32317071 32317261 -130282669 - MER58A DNA MER1_type 0 224 6 1098 184 134 25 chrX 32317314 32317679 -130282251 - LTR37A LTR ERV1 0 426 22 260 371 0 9 chrX 32317686 32317802 -130282128 - MER5A DNA MER1_type -74 115 1 422 210 74 0 chrX 32320961 32321042 -130278888 + L2 LINE L2 3169 3255 -17 1257 197 58 52 chrX 32322373 32322682 -130277248 + AluJo SINE Alu 1 311 -1 864 265 168 20 chrX 32323463 32323690 -130276240 + L2 LINE L2 1976 2168 -1146 473 96 12 48 chrX 32323690 32323773 -130276157 - MADE1 DNA Mariner 0 80 1 864 265 168 20 chrX 32323773 32323896 -130276034 + L2 LINE L2 2168 2378 -936 937 179 18 12 chrX 32324850 32325018 -130274912 - MER5B DNA MER1_type -2 176 8 198 337 12 12 chrX 32325311 32325394 -130274536 - MIR SINE MIR -166 96 14 839 206 69 0 chrX 32325394 32325583 -130274347 + MLT1J2 LTR MaLR 1 202 -248 314 326 159 25 chrX 32325753 32326106 -130273824 - L2 LINE L2 -1697 1617 1218 344 301 43 0 chrX 32326112 32326205 -130273725 + L2 LINE L2 3172 3268 -4 * 687 301 149 41 chrX 32326190 32326748 -130273182 - L2 LINE L2 -2380 934 317 275 302 64 62 chrX 32326992 32327288 -130272642 - MLT1H LTR MaLR -209 340 8 226 219 167 10 chrX 32327478 32327574 -130272356 + MIR SINE MIR 102 212 -50 222 105 0 0 chrX 32328431 32328469 -130271461 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 593 175 43 13 chrX 32329112 32329328 -130270602 - MER33 DNA MER1_type 0 324 23 1275 198 206 11 chrX 32331465 32331829 -130268101 - MER101 LTR ERV1 -32 442 8 398 315 159 43 chrX 32332994 32333270 -130266660 - L3 LINE CR1 -31 1546 1239 640 280 124 9 chrX 32335724 32335949 -130263981 - MIR SINE MIR -1 261 11 306 0 0 0 chrX 32336170 32336204 -130263726 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1983 109 72 7 chrX 32336756 32337049 -130262881 - AluSx SINE Alu 0 312 1 636 249 83 10 chrX 32338438 32338643 -130261287 - MER112 DNA MER1_type -40 220 1 636 246 42 37 chrX 32339266 32339457 -130260473 - MIR SINE MIR -15 247 56 229 230 106 115 chrX 32340487 32340600 -130259330 - MIR SINE MIR -123 139 28 472 255 174 19 chrX 32340979 32341191 -130258739 - MIR SINE MIR -11 251 7 215 208 222 0 chrX 32341805 32341877 -130258053 - MIR SINE MIR -91 171 84 216 329 29 57 chrX 32342441 32342581 -130257349 - L2 LINE L2 -18 3295 3160 877 242 45 18 chrX 32342797 32343020 -130256910 + MIR SINE MIR 13 241 -21 2287 68 0 31 chrX 32343649 32343973 -130255957 + AluY SINE Alu 1 315 0 640 192 8 25 chrX 32344714 32344834 -130255096 + MIR3 SINE MIR 46 163 -45 792 277 32 36 chrX 32344844 32345097 -130254833 - MIR SINE MIR -1 261 10 554 147 105 11 chrX 32345518 32345613 -130254317 + FLAM_A SINE Alu 16 119 -23 21 36 0 0 chrX 32345918 32345946 -130253984 + AT_rich Low_complexity Low_complexity 1 28 0 1014 87 0 0 chrX 32347384 32347511 -130252419 - AluSq/x SINE Alu -185 127 1 195 356 68 25 chrX 32347592 32347710 -130252220 - L2 LINE L2 -12 3301 3179 292 341 43 7 chrX 32348052 32348235 -130251695 + MIR SINE MIR 1 190 -63 251 282 118 27 chrX 32348424 32348534 -130251396 - L1ME2 LINE L1 -99 6065 5946 1736 158 4 11 chrX 32348568 32348846 -130251084 - AluJo SINE Alu -36 276 1 1175 126 18 0 chrX 32348865 32349032 -130250898 + AluSp SINE Alu 134 303 -10 28 61 0 0 chrX 32349104 32349153 -130250777 + AT_rich Low_complexity Low_complexity 1 49 0 213 39 0 0 chrX 32351142 32351168 -130248762 + (TA)n Simple_repeat Simple_repeat 1 26 0 2346 68 0 10 chrX 32351278 32351570 -130248360 + AluY SINE Alu 1 289 -22 215 324 29 20 chrX 32351642 32351744 -130248186 - L2 LINE L2 -218 3054 2952 521 170 11 11 chrX 32352528 32352622 -130247308 - L3 LINE CR1 -148 1429 1336 359 277 13 50 chrX 32353115 32353274 -130246656 + MIR SINE MIR 2 154 -108 1259 8 0 0 chrX 32353865 32353999 -130245931 - L1PA5 LINE L1 -5 6149 6016 286 221 12 58 chrX 32354283 32354369 -130245561 + MIR SINE MIR 164 245 -17 974 247 206 12 chrX 32354740 32355368 -130244562 - L2 LINE L2 0 3313 2551 194 320 117 0 chrX 32357708 32357811 -130242119 - MIR3 SINE MIR -3 205 91 1932 148 3 10 chrX 32358283 32358574 -130241356 - AluJo SINE Alu -23 289 1 375 89 0 0 chrX 32359093 32359149 -130240781 + (CA)n Simple_repeat Simple_repeat 1 56 0 627 299 0 17 chrX 32359568 32359742 -130240188 - MIR3 SINE MIR -15 193 23 864 160 0 8 chrX 32359759 32359890 -130240040 - FLAM_A SINE Alu -3 130 1 2325 107 0 19 chrX 32359909 32360227 -130239703 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 32360362 32360390 -130239540 + AT_rich Low_complexity Low_complexity 1 28 0 180 297 99 27 chrX 32362905 32363016 -130236914 - MIR3 SINE MIR -3 205 87 3736 71 31 2 chrX 32363130 32363247 -130236683 + L1PB1 LINE L1 5660 5772 -379 399 21 0 0 chrX 32363247 32363295 -130236635 + (CA)n Simple_repeat Simple_repeat 2 49 0 3736 71 31 2 chrX 32363295 32363654 -130236276 + L1PB1 LINE L1 5772 6150 -1 237 275 116 0 chrX 32364361 32364430 -130235500 - L2 LINE L2 -22 3250 3174 2485 74 0 6 chrX 32366684 32366995 -130232935 - AluY SINE Alu -2 309 1 24 32 0 0 chrX 32367477 32367508 -130232422 + AT_rich Low_complexity Low_complexity 1 31 0 426 239 34 62 chrX 32367919 32368095 -130231835 + MER5B DNA MER1_type 4 174 -4 247 317 65 41 chrX 32368219 32368342 -130231588 + MIR3 SINE MIR 74 199 -9 2473 139 76 9 chrX 32368601 32369047 -130230883 - L1MA6 LINE L1 -345 5955 5480 1894 116 51 14 chrX 32369047 32369338 -130230592 + L1MA6 LINE L1 5996 6298 -2 324 299 120 22 chrX 32369368 32369552 -130230378 - MIR SINE MIR -30 232 31 552 324 43 51 chrX 32370677 32371029 -130228901 + L3 LINE CR1 1071 1419 -158 1599 171 7 24 chrX 32371856 32372143 -130227787 + AluJb SINE Alu 1 282 -30 31 0 0 0 chrX 32372404 32372435 -130227495 + AT_rich Low_complexity Low_complexity 1 31 0 2088 130 0 16 chrX 32373460 32373768 -130226162 - AluSx SINE Alu -9 303 1 357 207 86 26 chrX 32375044 32375160 -130224770 - L1MC4 LINE L1 -2 8040 7918 1202 151 11 0 chrX 32375165 32375344 -130224586 - MER58A DNA MER1_type -2 222 42 686 275 63 10 chrX 32377215 32377422 -130222508 + MIR SINE MIR 13 230 -32 530 255 15 90 chrX 32378917 32379117 -130220813 - MER5A DNA MER1_type -1 188 4 299 112 0 3 chrX 32379613 32379836 -130220094 + AluSx SINE Alu 1 300 0 1408 101 10 5 chrX 32380022 32380221 -130219709 + L1PA13 LINE L1 5945 6144 -19 405 0 0 0 chrX 32380635 32380680 -130219250 + (TC)n Simple_repeat Simple_repeat 2 46 0 242 209 215 25 chrX 32380975 32381138 -130218792 + L1MC5 LINE L1 7724 7917 -44 26 30 0 0 chrX 32382271 32382304 -130217626 + AT_rich Low_complexity Low_complexity 1 33 0 411 246 33 8 chrX 32382450 32382572 -130217358 - L1ME3A LINE L1 -5 6165 6041 307 309 87 8 chrX 32385300 32385426 -130214504 + MIR SINE MIR 50 185 -77 1888 139 0 0 chrX 32385433 32385692 -130214238 + AluSx SINE Alu 1 259 -53 371 206 0 0 chrX 32385703 32385766 -130214164 - MER2 DNA MER2_type -1 344 282 1338 143 0 0 chrX 32385794 32386004 -130213926 - MER2 DNA MER2_type -135 210 1 300 269 50 35 chrX 32386509 32386650 -130213280 + MER5A DNA MER1_type 24 166 -23 * 809 182 0 7 chrX 32386529 32386672 -130213258 - MER5A DNA MER1_type -35 154 13 34 0 0 0 chrX 32387606 32387640 -130212290 + AT_rich Low_complexity Low_complexity 1 34 0 2104 214 87 44 chrX 32390245 32390955 -130208975 - L1ME3 LINE L1 -1 6161 5421 534 206 94 0 chrX 32391118 32391278 -130208652 - L1ME3 LINE L1 -777 5369 5195 932 170 0 0 chrX 32391548 32391727 -130208203 + FRAM SINE Alu 1 178 0 231 276 26 0 chrX 32391925 32392001 -130207929 - MER5B DNA MER1_type -100 78 1 482 284 183 29 chrX 32392256 32393194 -130206736 - L1ME3 LINE L1 -2762 3384 2302 2114 165 59 63 chrX 32393827 32394337 -130205593 - LTR54 LTR ERV1 -2 508 1 226 291 55 55 chrX 32394540 32394650 -130205280 + L2 LINE L2 3163 3272 0 22 35 0 0 chrX 32395146 32395175 -130204755 + AT_rich Low_complexity Low_complexity 1 29 0 1359 253 113 34 chrX 32395406 32395901 -130204029 - MLT1F LTR MaLR -8 534 1 2332 106 0 6 chrX 32396026 32396338 -130203592 - AluSg SINE Alu 0 310 1 219 151 0 57 chrX 32396414 32396467 -130203463 + T-rich Low_complexity Low_complexity 6 55 0 235 269 120 65 chrX 32396792 32396900 -130203030 + L3 LINE CR1 1091 1204 -373 253 358 68 11 chrX 32396976 32397152 -130202778 + L2 LINE L2 2110 2295 -1019 3829 101 39 17 chrX 32397271 32397858 -130202072 - LTR43 LTR ERV1 0 602 3 390 240 12 146 chrX 32397886 32398057 -130201873 - L2 LINE L2 -3 3310 3163 1689 152 39 23 chrX 32398575 32398713 -130201217 - LTR23 LTR ERV1 0 467 333 1861 134 0 36 chrX 32398713 32399019 -130200911 - AluJb SINE Alu -17 295 1 1689 152 39 23 chrX 32399019 32399308 -130200622 - LTR23 LTR ERV1 -134 333 1 460 236 170 24 chrX 32399369 32399534 -130200396 + MER5A DNA MER1_type 1 189 0 477 155 23 41 chrX 32399549 32399670 -130200260 - MER5B DNA MER1_type 0 178 1 199 273 18 0 chrX 32399809 32399864 -130200066 + L3b LINE CR1 1244 1299 -284 1701 157 20 14 chrX 32400388 32400682 -130199248 + AluJb SINE Alu 1 296 -16 4792 127 20 1 chrX 32401107 32401815 -130198115 + MER72 LTR ERV1 2 722 0 1720 229 51 14 chrX 32404055 32404562 -130195368 + L1ME3 LINE L1 5634 6159 -3 2857 153 59 41 chrX 32404581 32405075 -130194855 + L1MA9 LINE L1 5469 5978 -334 1782 151 46 3 chrX 32405075 32405360 -130194570 + AluSx SINE Alu 1 297 -15 2857 153 59 41 chrX 32405360 32405493 -130194437 + L1MA9 LINE L1 5978 6107 -205 852 112 0 9 chrX 32405500 32405616 -130194314 + FLAM_C SINE Alu 9 123 -20 1207 119 5 5 chrX 32405616 32405826 -130194104 + L1MA9 LINE L1 6092 6301 -11 303 299 51 51 chrX 32406188 32406345 -130193585 + MIR3 SINE MIR 34 190 -18 297 0 0 0 chrX 32406510 32406543 -130193387 + (CA)n Simple_repeat Simple_repeat 1 33 0 3209 218 23 38 chrX 32406831 32407115 -130192815 + L1ME1 LINE L1 45 332 -6064 1558 102 27 4 chrX 32407115 32407340 -130192590 + MER30 DNA MER1_type 1 230 0 3209 218 23 38 chrX 32407340 32407692 -130192238 + L1ME1 LINE L1 332 665 -5731 1695 182 47 3 chrX 32407692 32407989 -130191941 + AluJo SINE Alu 1 310 -2 3209 218 23 38 chrX 32407989 32408266 -130191664 + L1ME1 LINE L1 665 945 -5451 965 206 0 0 chrX 32408298 32408468 -130191462 - FAM SINE Alu -5 170 1 4263 235 43 33 chrX 32408469 32409351 -130190579 + L1ME1 LINE L1 1311 2182 -4033 877 206 12 24 chrX 32409351 32409521 -130190409 + FAM SINE Alu 1 168 -7 4263 235 43 33 chrX 32409521 32410066 -130189864 + L1ME1 LINE L1 2182 2720 -3495 1795 142 3 48 chrX 32410066 32410376 -130189554 - AluJb SINE Alu -16 296 1 4263 235 43 33 chrX 32410376 32411065 -130188865 + L1ME1 LINE L1 2720 3413 -2802 1632 132 18 0 chrX 32411065 32411285 -130188645 - AluSx SINE Alu -26 286 63 4263 235 43 33 chrX 32411285 32411765 -130188165 + L1ME1 LINE L1 3413 3887 -2328 563 223 14 0 chrX 32411764 32411903 -130188027 + L1ME1 LINE L1 4168 4308 -1907 * 3063 211 61 20 chrX 32411936 32412295 -130187635 + L1ME1 LINE L1 4408 4751 -1484 2329 64 3 10 chrX 32412295 32412608 -130187322 + L1PA8 LINE L1 5860 6170 -2 3063 211 61 20 chrX 32412608 32413921 -130186009 + L1ME1 LINE L1 4751 6219 -16 902 174 11 22 chrX 32413930 32414114 -130185816 + L1MB7 LINE L1 5620 5801 -383 1688 139 21 0 chrX 32414114 32414402 -130185528 + MER47A DNA MER2_type 1 294 -72 6709 35 4 0 chrX 32414403 32415243 -130184687 - L1PA5 LINE L1 -5 6149 5307 1817 130 58 20 chrX 32415243 32415556 -130184374 - AluSx SINE Alu 0 312 1 416 232 0 0 chrX 32415556 32415638 -130184292 + MER47A DNA MER2_type 285 366 0 1612 169 57 30 chrX 32415638 32416005 -130183925 + L1MB7 LINE L1 5800 6176 -8 408 201 69 42 chrX 32416371 32416515 -130183415 - L1ME3A LINE L1 -5 6165 6018 2554 157 37 2 chrX 32416544 32417009 -130182921 - L1MB2 LINE L1 -8 6163 5683 724 228 92 48 chrX 32417030 32417280 -130182650 - MIR SINE MIR 0 262 2 246 287 327 0 chrX 32418891 32418992 -130180938 - L2 LINE L2 -5 3267 3134 239 143 0 0 chrX 32419181 32419223 -130180707 + AluSq SINE Alu 1 42 -257 5410 107 2 14 chrX 32419223 32420012 -130179918 - LTR17 LTR ERV1 0 780 1 1729 80 57 42 chrX 32420012 32420275 -130179655 + AluSq SINE Alu 39 305 -8 517 334 98 41 chrX 32420532 32420985 -130178945 - L2 LINE L2 -607 2707 2208 1627 95 0 5 chrX 32420985 32421195 -130178735 - AluSg/x SINE Alu -18 292 84 517 334 98 41 chrX 32421195 32421355 -130178575 - L2 LINE L2 -1106 2208 2059 190 301 131 78 chrX 32421433 32421768 -130178162 - L2 LINE L2 -2 3270 2918 613 294 82 45 chrX 32422436 32422861 -130177069 + L1MC/D LINE L1 5280 5720 -2088 2221 99 0 0 chrX 32423433 32423757 -130176173 + AluSx SINE Alu 1 324 0 803 125 0 9 chrX 32423772 32423884 -130176046 + FLAM_A SINE Alu 8 118 -24 2351 81 7 0 chrX 32424261 32424556 -130175374 + AluSp SINE Alu 2 298 -15 3172 27 3 0 chrX 32424671 32425046 -130174884 + L1PA4 LINE L1 5779 6154 -1 383 320 80 20 chrX 32425374 32425574 -130174356 + L2 LINE L2 2874 3085 -187 473 133 152 9 chrX 32426031 32426136 -130173794 + MER61A LTR ERV1 1 120 -223 463 81 0 54 chrX 32426135 32426209 -130173721 + MER61A LTR ERV1 274 343 0 * 2763 174 73 24 chrX 32426209 32426876 -130173054 + MER61A-int LTR ERV1 1 700 -4517 18146 99 19 16 chrX 32426916 32427488 -130172442 + MER61A-int LTR ERV1 1320 1889 -3328 2450 77 0 0 chrX 32427488 32427786 -130172144 - AluSg SINE Alu -12 298 1 18146 99 19 16 chrX 32427786 32430867 -130169063 + MER61A-int LTR ERV1 1889 5216 -1 1226 160 167 23 chrX 32430867 32431167 -130168763 + MER61A LTR ERV1 1 343 0 359 219 0 42 chrX 32431629 32431725 -130168205 + HsTC2 DNA Tc2 1 92 -1806 241 261 0 0 chrX 32431743 32431812 -130168118 + HsTC2 DNA Tc2 1723 1791 -107 1163 268 132 21 chrX 32432011 32432488 -130167442 + L1MC4a LINE L1 5320 5849 -1959 34 0 0 0 chrX 32432642 32432676 -130167254 + AT_rich Low_complexity Low_complexity 1 34 0 644 339 49 37 chrX 32433760 32434389 -130165541 + L1MEd LINE L1 12 648 -5471 256 217 72 24 chrX 32434410 32434493 -130165437 + MLT1H1 LTR MaLR 9 95 -495 801 257 135 52 chrX 32434548 32434991 -130164939 + MLT1H1 LTR MaLR 76 555 0 1301 225 89 66 chrX 32435139 32435612 -130164318 + L1MC4a LINE L1 5455 5945 -1863 2065 145 3 0 chrX 32435612 32435922 -130164008 + AluSx SINE Alu 1 311 -1 1301 225 89 66 chrX 32435922 32436012 -130163918 + L1MC4a LINE L1 5945 6031 -1777 613 254 124 28 chrX 32436132 32436513 -130163417 + L1MEd LINE L1 917 1236 -4886 377 268 148 78 chrX 32436513 32436926 -130163004 + HAL1b LINE L1 391 830 -518 2614 42 0 3 chrX 32437034 32437345 -130162585 + AluY SINE Alu 1 310 -1 206 351 0 0 chrX 32437406 32437520 -130162410 + A-rich Low_complexity Low_complexity 1 114 0 481 334 51 10 chrX 32437600 32438109 -130161821 + L1MEd LINE L1 2218 2747 -3382 1043 167 0 0 chrX 32438312 32438468 -130161462 - FRAM SINE Alu -16 160 5 389 333 57 29 chrX 32439580 32439826 -130160104 - MIR SINE MIR 0 262 10 184 409 88 7 chrX 32440102 32440239 -130159691 - L2 LINE L2 -9 3263 3116 186 43 0 0 chrX 32440640 32440663 -130159267 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chrX 32440792 32440827 -130159103 + AT_rich Low_complexity Low_complexity 1 35 0 492 106 0 0 chrX 32441045 32441130 -130158800 + L1MA7 LINE L1 6205 6289 -2 875 141 11 45 chrX 32441238 32441415 -130158515 - L1PA15 LINE L1 -3 6162 5992 216 200 0 0 chrX 32441425 32441470 -130158460 + T-rich Low_complexity Low_complexity 1 45 0 * 362 73 0 18 chrX 32441469 32441524 -130158406 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1677 189 30 3 chrX 32441526 32441828 -130158102 - AluSx SINE Alu -2 310 1 5229 145 3 3 chrX 32441829 32443355 -130156575 - L1PA15 LINE L1 -126 6039 4513 3700 191 21 0 chrX 32443352 32444101 -130155829 + L1P LINE L1 3492 4256 -1890 * 704 142 0 8 chrX 32444101 32444221 -130155709 - MLT1A1 LTR MaLR -246 119 1 3683 113 31 17 chrX 32444479 32445057 -130154873 + L1PA16 LINE L1 5572 6157 -9 1765 170 3 7 chrX 32445158 32445452 -130154478 + AluJo SINE Alu 5 297 -15 1200 76 0 199 chrX 32445476 32445595 -130154335 - MLT2A1 LTR ERVL 0 444 415 2318 63 3 0 chrX 32445595 32445879 -130154051 - AluY SINE Alu -26 285 1 1200 76 0 199 chrX 32445879 32446050 -130153880 - MLT2A1 LTR ERVL -29 415 212 8334 50 12 0 chrX 32446050 32447116 -130152814 - HERVL LTR ERVL -1562 4092 3014 247 176 0 20 chrX 32448290 32448341 -130151589 + MLT1J2 LTR MaLR 77 126 -324 * 1068 234 89 23 chrX 32448308 32448702 -130151228 + MLT1L LTR MaLR 196 615 0 756 250 60 8 chrX 32450774 32451022 -130148908 - LTR33A LTR ERVL -27 496 236 1500 218 65 79 chrX 32451053 32451548 -130148382 - MLT1F1 LTR MaLR -5 562 75 750 170 33 71 chrX 32451597 32451690 -130148240 - MER69A DNA AcHobo -2351 175 91 1875 192 40 14 chrX 32451690 32452111 -130147819 + L1MB8 LINE L1 5747 6178 0 750 170 33 71 chrX 32452111 32452199 -130147731 - MER69A DNA AcHobo -2435 91 1 499 249 142 10 chrX 32452201 32452398 -130147532 - LTR33A LTR ERVL -292 231 9 2004 242 61 54 chrX 32452796 32453684 -130146246 + MER97a DNA MER1_type? 1 894 0 359 259 0 0 chrX 32453710 32453795 -130146135 - MIR SINE MIR -126 136 52 627 238 65 12 chrX 32453826 32453994 -130145936 - MIR SINE MIR -54 208 32 738 196 31 57 chrX 32455414 32455608 -130144322 + MER5A DNA MER1_type 1 189 0 314 331 94 36 chrX 32455880 32456209 -130143721 + L2 LINE L2 2127 2474 -840 326 346 79 12 chrX 32457204 32457458 -130142472 - LTR16C LTR ERVL -220 271 1 236 345 17 0 chrX 32457614 32457733 -130142197 + L2 LINE L2 2934 3054 -218 186 273 36 0 chrX 32458141 32458196 -130141734 - L3b LINE CR1 -336 1247 1191 3000 75 0 0 chrX 32458828 32459203 -130140727 + THE1C LTR MaLR 1 375 0 343 246 42 34 chrX 32459286 32459404 -130140526 - MER5A DNA MER1_type 0 189 71 316 161 25 0 chrX 32459476 32459557 -130140373 + (TA)n Simple_repeat Simple_repeat 1 83 0 234 62 0 0 chrX 32459632 32459664 -130140266 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 108 0 0 chrX 32459721 32459758 -130140172 + (TG)n Simple_repeat Simple_repeat 2 38 0 552 180 107 0 chrX 32459768 32459890 -130140040 - LTR16C LTR ERVL -3 488 354 276 345 77 30 chrX 32459952 32460120 -130139810 - LTR16C LTR ERVL -315 176 1 2506 54 0 0 chrX 32461751 32462048 -130137882 + AluY SINE Alu 3 299 -12 198 167 0 0 chrX 32462550 32462586 -130137344 + GA-rich Low_complexity Low_complexity 3 38 0 1996 66 4 0 chrX 32462612 32462924 -130137006 + AluSx SINE Alu 39 351 0 26 74 0 0 chrX 32463666 32463720 -130136210 + AT_rich Low_complexity Low_complexity 1 54 0 207 224 17 0 chrX 32463817 32463875 -130136055 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 1151 142 0 0 chrX 32464007 32464169 -130135761 + FRAM SINE Alu 2 163 -13 25 0 0 0 chrX 32464581 32464606 -130135324 + AT_rich Low_complexity Low_complexity 1 25 0 2151 31 0 4 chrX 32464804 32465094 -130134836 - L1PA3 LINE L1 0 6155 5902 1769 140 0 7 chrX 32465096 32465374 -130134556 + AluSx SINE Alu 1 276 -36 1561 112 31 0 chrX 32465650 32465873 -130134057 + MER30 DNA MER1_type 1 230 0 324 0 0 0 chrX 32466176 32466212 -130133718 + (CA)n Simple_repeat Simple_repeat 2 37 0 460 233 106 42 chrX 32466599 32466788 -130133142 - L1ME3A LINE L1 -8 6162 5962 833 207 47 77 chrX 32466847 32467015 -130132915 - L1ME3A LINE L1 -213 5957 5800 1500 93 75 0 chrX 32467015 32467229 -130132701 - MER30 DNA MER1_type 0 230 1 833 207 47 77 chrX 32467229 32467360 -130132570 - L1ME3A LINE L1 -370 5800 5667 23 0 0 0 chrX 32468832 32468855 -130131075 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chrX 32469684 32469727 -130130203 + AT_rich Low_complexity Low_complexity 1 43 0 2156 119 0 0 chrX 32469944 32470238 -130129692 - AluSx SINE Alu -18 294 1 1816 162 0 7 chrX 32471713 32472019 -130127911 - AluJo SINE Alu 0 304 1 229 180 82 0 chrX 32472263 32472324 -130127606 - L1MA10 LINE L1 0 6334 6269 1887 157 0 7 chrX 32472656 32472949 -130126981 - AluJb SINE Alu -21 291 1 262 307 87 46 chrX 32473392 32473610 -130126320 - L2 LINE L2 -387 2927 2701 555 242 108 57 chrX 32473627 32474016 -130125914 + L1MC4a LINE L1 5722 6130 -1678 21 0 0 0 chrX 32474036 32474057 -130125873 + AT_rich Low_complexity Low_complexity 1 21 0 897 244 19 14 chrX 32475195 32475404 -130124526 + MIR SINE MIR 49 258 -4 396 303 28 61 chrX 32475458 32475514 -130124416 - L1MD2 LINE L1 -245 6114 6059 3551 148 29 72 chrX 32475514 32476349 -130123581 - L1MA8 LINE L1 -210 6081 5283 * 6478 172 24 15 chrX 32476347 32477707 -130122223 + L1MA8 LINE L1 3938 5308 -838 218 316 58 47 chrX 32477808 32477979 -130121951 - L2 LINE L2 -408 2906 2734 3261 187 45 80 chrX 32478792 32479621 -130120309 - L1ME2 LINE L1 -13 6151 5339 1485 167 22 13 chrX 32479621 32479938 -130119992 - L1MA8 LINE L1 -6 6285 5966 3261 187 45 80 chrX 32479938 32480063 -130119867 - L1ME2 LINE L1 -825 5339 5211 191 268 56 14 chrX 32480087 32480158 -130119772 - L3b LINE CR1 -246 1337 1264 881 200 5 64 chrX 32480352 32480572 -130119358 + MER3 DNA MER1_type 1 207 -2 304 304 14 22 chrX 32480668 32480966 -130118964 + L1MC4a LINE L1 4726 5019 -1127 228 128 106 0 chrX 32481234 32481281 -130118649 + MLT-int LTR MaLR 1444 1495 -240 5813 103 36 23 chrX 32481281 32481753 -130118177 - Tigger3b DNA MER2_type -1797 1231 766 2227 102 3 0 chrX 32481753 32482038 -130117892 + AluSp SINE Alu 1 309 0 208 0 0 0 chrX 32482038 32482061 -130117869 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5813 103 36 23 chrX 32482061 32482795 -130117135 - Tigger3b DNA MER2_type -2262 766 1 651 156 97 159 chrX 32482795 32483052 -130116878 + MLT1C-int LTR MaLR 1131 1371 0 1355 223 39 68 chrX 32483052 32483243 -130116687 + MLT1C LTR MaLR 1 196 -271 1655 153 40 7 chrX 32483243 32483518 -130116412 + AluJb SINE Alu 1 284 -28 1355 223 39 68 chrX 32483518 32483783 -130116147 + MLT1C LTR MaLR 196 444 -23 469 317 68 28 chrX 32484201 32484816 -130115114 + L1MC4a LINE L1 5255 5894 -1914 465 226 139 0 chrX 32484901 32485038 -130114892 + MLT1H LTR MaLR 7 162 -387 319 208 25 67 chrX 32485246 32485366 -130114564 + MLT1C LTR MaLR 434 548 -1 1587 202 26 45 chrX 32485662 32486082 -130113848 + MLT1C LTR MaLR 54 465 -2 352 250 111 44 chrX 32486103 32486283 -130113647 - MLT1J LTR MaLR -3 508 317 247 304 8 48 chrX 32486483 32486608 -130113322 - L2 LINE L2 -737 2577 2458 968 97 0 159 chrX 32486825 32487052 -130112878 + L1MC1 LINE L1 6128 6318 -15 1863 174 0 13 chrX 32487061 32487372 -130112558 + AluJb SINE Alu 1 307 -5 22 35 0 0 chrX 32487481 32487510 -130112420 + AT_rich Low_complexity Low_complexity 1 29 0 899 272 82 37 chrX 32487616 32488205 -130111725 + HAL1b LINE L1 55 669 -679 2034 121 0 3 chrX 32488216 32488525 -130111405 + AluSx SINE Alu 1 308 0 409 341 63 20 chrX 32488568 32488823 -130111107 + L1 LINE L1 2257 2522 -3624 1633 201 40 40 chrX 32488992 32489366 -130110564 + MLT1A2 LTR MaLR 1 374 0 500 193 22 44 chrX 32489588 32489723 -130110207 - MER104 DNA Tc2 -6 174 43 426 289 105 46 chrX 32490004 32490425 -130109505 + L1 LINE L1 2978 3430 -2716 2227 82 4 0 chrX 32490425 32490704 -130109226 + AluSp SINE Alu 3 282 -31 426 289 105 46 chrX 32490704 32490752 -130109178 + L1 LINE L1 3430 3474 -2672 1107 247 215 22 chrX 32490771 32491350 -130108580 - LTR50 LTR ERVL -19 682 64 235 355 11 11 chrX 32491529 32491712 -130108218 + L1 LINE L1 3753 3935 -2211 731 284 126 33 chrX 32491794 32492128 -130107802 - L2 LINE L2 0 3313 2949 1327 334 68 17 chrX 32492162 32492917 -130107013 - L2 LINE L2 -801 2513 1721 1840 248 166 8 chrX 32493019 32493671 -130106259 + L2 LINE L2 2272 3006 -307 756 150 0 29 chrX 32493867 32494040 -130105890 + GA-rich Low_complexity Low_complexity 3 170 0 192 284 45 0 chrX 32494314 32494381 -130105549 - MIR SINE MIR -128 134 65 24 32 0 0 chrX 32494618 32494649 -130105281 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chrX 32495227 32495253 -130104677 + AT_rich Low_complexity Low_complexity 1 26 0 525 151 32 56 chrX 32496567 32496693 -130103237 - L1ME3A LINE L1 -10 6160 6038 1482 269 146 30 chrX 32496697 32497570 -130102360 - HAL1b LINE L1 -225 1123 352 492 18 0 0 chrX 32497570 32497627 -130102303 + (TG)n Simple_repeat Simple_repeat 2 58 0 2273 94 0 10 chrX 32497627 32497915 -130102015 - AluSx SINE Alu -27 285 1 1482 269 146 30 chrX 32497915 32497968 -130101962 - HAL1b LINE L1 -995 353 89 1389 272 68 14 chrX 32499203 32499630 -130100300 + L3 LINE CR1 434 883 -694 205 263 35 18 chrX 32499716 32499773 -130100157 + MIR SINE MIR 16 73 -135 412 280 138 37 chrX 32499995 32500213 -130099717 + L3 LINE CR1 1115 1354 -223 249 254 42 0 chrX 32500217 32500288 -130099642 + L3 LINE CR1 1469 1542 -35 2486 56 0 3 chrX 32500671 32500975 -130098955 + AluSc SINE Alu 1 303 -6 187 231 26 0 chrX 32502341 32502380 -130097550 - MIR SINE MIR -117 145 106 2375 68 3 0 chrX 32502847 32503142 -130096788 - AluSg SINE Alu -14 296 1 225 65 0 0 chrX 32504122 32504153 -130095777 + (CCCTG)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chrX 32504196 32504219 -130095711 + GC_rich Low_complexity Low_complexity 1 23 0 211 204 0 20 chrX 32506255 32506304 -130093626 + C-rich Low_complexity Low_complexity 3 50 0 397 228 203 13 chrX 32507648 32507806 -130092124 + MIR SINE MIR 25 212 -50 32 0 0 0 chrX 32508892 32508924 -130091006 + AT_rich Low_complexity Low_complexity 1 32 0 272 120 20 0 chrX 32509937 32509987 -130089943 + CT-rich Low_complexity Low_complexity 1 51 0 28 48 0 0 chrX 32510380 32510422 -130089508 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrX 32510443 32510464 -130089466 + AT_rich Low_complexity Low_complexity 1 21 0 1176 293 92 5 chrX 32510639 32511032 -130088898 + MER115 DNA AcHobo 32 458 -235 242 118 0 59 chrX 32512933 32512984 -130086946 - MER116 DNA Mariner 0 80 33 1903 211 132 30 chrX 32513252 32513792 -130086138 + MLT1G1 LTR MaLR 1 595 0 2228 140 39 83 chrX 32514032 32514552 -130085378 + MLT1D LTR MaLR 3 499 -6 343 247 96 7 chrX 32514977 32515123 -130084807 - L1ME2 LINE L1 0 6164 6006 255 103 0 0 chrX 32515123 32515162 -130084768 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2421 88 3 0 chrX 32515169 32515476 -130084454 - AluSg SINE Alu -2 308 1 2068 106 0 20 chrX 32515481 32515773 -130084157 - AluSx SINE Alu 0 312 27 1951 206 33 43 chrX 32515789 32516229 -130083701 - L1ME2 LINE L1 -143 6021 5585 2562 111 23 10 chrX 32516229 32516625 -130083305 - MER57A LTR ERV1 -2 401 1 1951 206 33 43 chrX 32516625 32516695 -130083235 - L1ME2 LINE L1 -579 5585 5516 185 150 0 25 chrX 32517405 32517445 -130082485 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 534 304 38 87 chrX 32517639 32518008 -130081922 - L2 LINE L2 -5 3267 2917 1956 201 87 49 chrX 32518064 32518671 -130081259 + L1MC4 LINE L1 7413 8042 0 487 321 63 39 chrX 32518736 32519069 -130080861 - L2 LINE L2 -631 2683 2343 1588 255 173 10 chrX 32519072 32519593 -130080337 + L2 LINE L2 2372 2977 -337 560 283 31 95 chrX 32519601 32520117 -130079813 - MLT1J LTR MaLR -28 483 1 22 0 0 0 chrX 32520694 32520716 -130079214 + AT_rich Low_complexity Low_complexity 1 22 0 2250 82 0 0 chrX 32522241 32522520 -130077410 + AluY SINE Alu 1 279 -32 255 20 0 78 chrX 32522520 32522571 -130077359 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 238 227 0 0 chrX 32523719 32523763 -130076167 - MIR3 SINE MIR -11 197 154 239 369 0 0 chrX 32523774 32523839 -130076091 - MIR SINE MIR -124 84 20 1635 216 73 38 chrX 32524780 32525233 -130074697 + L1ME2 LINE L1 5597 6089 -89 870 195 158 5 chrX 32525233 32525423 -130074507 - MER20 DNA MER1_type 0 219 1 1635 216 73 38 chrX 32525423 32525516 -130074414 + L1ME2 LINE L1 6089 6177 -1 2614 128 0 12 chrX 32525547 32525977 -130073953 + L1MC3 LINE L1 7202 7626 -159 198 0 0 0 chrX 32526020 32526042 -130073888 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7117 54 0 0 chrX 32526042 32527555 -130072375 - L1PA6 LINE L1 -18 6136 4624 677 131 9 9 chrX 32527556 32527663 -130072267 + FLAM_C SINE Alu 27 133 -10 645 174 36 0 chrX 32527665 32527803 -130072127 + L1MC3 LINE L1 7617 7759 -26 540 181 9 0 chrX 32528165 32528281 -130071649 + L1MA6 LINE L1 3345 3461 -2685 * 6817 145 31 26 chrX 32528275 32529332 -130070598 + L1MA6 LINE L1 3980 5030 -1270 2049 166 0 0 chrX 32529332 32529639 -130070291 + AluSx SINE Alu 3 309 -3 6817 145 31 26 chrX 32529639 32530194 -130069736 + L1MA6 LINE L1 5030 5581 -719 2374 94 0 0 chrX 32530194 32530493 -130069437 + AluSx SINE Alu 2 300 -12 6817 145 31 26 chrX 32530493 32531059 -130068871 + L1MA6 LINE L1 5581 6157 -143 1790 169 0 44 chrX 32531104 32531423 -130068507 - AluSx SINE Alu -7 305 1 1051 76 63 0 chrX 32531424 32531582 -130068348 + L1MA6 LINE L1 6133 6300 0 359 352 16 32 chrX 32531782 32531907 -130068023 - L2 LINE L2 -8 3264 3142 252 262 156 33 chrX 32532321 32532443 -130067487 + MIR SINE MIR 92 228 -34 370 311 5 20 chrX 32532554 32532744 -130067186 + MIR SINE MIR 3 247 -15 426 288 58 0 chrX 32532766 32532905 -130067025 + L2 LINE L2 3167 3313 0 634 255 81 23 chrX 32533083 32533342 -130066588 + MLT1G LTR MaLR 15 288 -302 2538 211 37 37 chrX 32533631 32534170 -130065760 + MLT1F LTR MaLR 4 542 0 284 327 122 38 chrX 32534960 32535223 -130064707 + L3b LINE CR1 1291 1575 -8 356 306 29 12 chrX 32536571 32536744 -130063186 - L1ME4a LINE L1 0 6121 5946 419 299 143 26 chrX 32536838 32537069 -130062861 + MIR SINE MIR 5 262 0 454 271 233 23 chrX 32537080 32537423 -130062507 - L1ME4a LINE L1 -366 5755 5341 187 320 10 70 chrX 32537425 32537525 -130062405 - L2 LINE L2 -3 3269 3176 1558 148 7 69 chrX 32538336 32538641 -130061289 - AluJo SINE Alu -26 286 1 859 233 175 53 chrX 32538757 32539174 -130060756 - MER110A LTR ERV1 0 468 1 397 273 55 0 chrX 32539195 32539305 -130060625 - MIR SINE MIR -65 143 28 190 214 24 0 chrX 32540045 32540087 -130059843 + L2 LINE L2 3271 3313 0 828 312 80 56 chrX 32541235 32541838 -130058092 + L3 LINE CR1 359 975 -602 197 235 52 87 chrX 32542588 32542703 -130057227 + L2 LINE L2 2262 2372 -942 493 323 143 31 chrX 32543008 32543302 -130056628 + L3 LINE CR1 1246 1572 -5 253 214 122 41 chrX 32543351 32543449 -130056481 + L1ME4a LINE L1 6012 6117 -4 1165 254 46 60 chrX 32543577 32544047 -130055883 - MLT1J LTR MaLR -7 504 1 524 232 53 13 chrX 32544179 32544330 -130055600 + MIR SINE MIR 106 262 0 315 0 0 0 chrX 32544529 32544564 -130055366 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chrX 32544563 32544591 -130055339 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 4607 138 37 90 chrX 32548254 32549266 -130050664 + L1MC3 LINE L1 6828 7785 0 2260 90 3 3 chrX 32550375 32550674 -130049256 + AluSp SINE Alu 1 299 -14 413 190 0 0 chrX 32551608 32551687 -130048243 + MIR SINE MIR 183 261 -1 3534 79 2 5 chrX 32551698 32552142 -130047788 - L1PA10 LINE L1 -2 6166 5724 780 267 58 12 chrX 32552336 32552576 -130047354 + LTR16C LTR ERVL 182 432 -59 28 48 0 0 chrX 32553856 32553898 -130046032 + AT_rich Low_complexity Low_complexity 1 42 0 861 128 0 43 chrX 32554287 32554428 -130045502 - AluJb SINE Alu -177 135 1 1756 164 10 3 chrX 32554469 32554761 -130045169 + AluJb SINE Alu 1 294 -18 2311 186 40 12 chrX 32554917 32555411 -130044519 - Charlie4a DNA MER1_type 0 508 1 576 341 72 0 chrX 32556232 32556455 -130043475 + MIR SINE MIR 9 247 -15 2273 90 7 10 chrX 32556464 32556765 -130043165 + AluSq SINE Alu 1 300 -13 180 125 0 0 chrX 32557080 32557112 -130042818 + (CA)n Simple_repeat Simple_repeat 1 32 0 592 323 80 32 chrX 32558096 32558641 -130041289 + L2 LINE L2 2644 3205 -108 303 194 28 28 chrX 32558641 32558713 -130041217 - LTR16C LTR ERVL 0 491 420 261 204 43 54 chrX 32558747 32558840 -130041090 - MLT2E LTR ERVL -54 574 483 321 339 26 0 chrX 32559074 32559189 -130040741 + L2 LINE L2 3194 3311 -2 495 193 0 0 chrX 32560155 32560243 -130039687 - L2 LINE L2 -1 3312 3225 2195 185 69 41 chrX 32560255 32560763 -130039167 + L1ME1 LINE L1 5640 6161 -5 558 239 38 92 chrX 32561102 32561341 -130038589 + LTR16C LTR ERVL 266 491 0 6271 278 89 22 chrX 32561408 32562323 -130037607 - L2 LINE L2 -248 3065 2213 2056 144 52 35 chrX 32562323 32562691 -130037239 + THE1C LTR MaLR 2 375 0 6271 278 89 22 chrX 32562691 32564125 -130035805 - L2 LINE L2 -1100 2213 572 295 269 67 45 chrX 32564648 32564782 -130035148 + MER5B DNA MER1_type 42 178 0 2165 122 16 3 chrX 32564888 32565191 -130034739 + AluSx SINE Alu 1 307 -5 253 111 0 0 chrX 32565337 32565373 -130034557 + MER5A DNA MER1_type 154 189 0 226 271 43 0 chrX 32566539 32566609 -130033321 + CT-rich Low_complexity Low_complexity 1 73 0 668 175 137 0 chrX 32566752 32566911 -130033019 + MER5A DNA MER1_type 4 187 -2 3155 161 68 4 chrX 32566914 32567461 -130032469 - MER6A DNA MER2_type 0 605 24 923 140 0 0 chrX 32567476 32567612 -130032318 - AluJb SINE Alu -18 294 159 373 143 16 16 chrX 32567613 32567676 -130032254 - AluJb SINE Alu -115 187 125 306 164 0 0 chrX 32567699 32567754 -130032176 + (TG)n Simple_repeat Simple_repeat 2 56 0 950 112 0 0 chrX 32567781 32567906 -130032024 - AluJb SINE Alu -187 125 1 251 296 25 0 chrX 32568010 32568091 -130031839 + MER115 DNA AcHobo 151 233 -460 213 39 0 0 chrX 32568284 32568310 -130031620 + (TC)n Simple_repeat Simple_repeat 2 27 0 1023 227 8 21 chrX 32568310 32568548 -130031382 + MER115 DNA AcHobo 459 693 0 235 286 193 21 chrX 32568685 32568825 -130031105 - L3b LINE CR1 -318 1265 1102 369 319 53 0 chrX 32568921 32569034 -130030896 - MER5A DNA MER1_type -64 125 7 180 405 0 0 chrX 32569174 32569253 -130030677 - L2 LINE L2 -8 3264 3186 255 31 0 0 chrX 32571081 32571113 -130028817 + (CA)n Simple_repeat Simple_repeat 1 32 0 323 304 20 20 chrX 32571113 32571215 -130028715 - L3 LINE CR1 -66 1511 1410 225 185 93 19 chrX 32571798 32571852 -130028078 - MLT1K LTR MaLR -2 586 529 308 229 38 99 chrX 32571929 32572060 -130027870 - MLT1K LTR MaLR -92 496 374 832 229 30 45 chrX 32572664 32572865 -130027065 - MIR SINE MIR -37 225 28 562 295 20 10 chrX 32573099 32573320 -130026610 + MIR3 SINE MIR 1 219 -43 380 271 93 55 chrX 32573470 32573720 -130026210 - L1ME4a LINE L1 -24 6097 5858 457 300 83 21 chrX 32573720 32573960 -130025970 + MER112 DNA MER1_type 1 255 -1 380 271 93 55 chrX 32573960 32574075 -130025855 - L1ME4a LINE L1 -263 5858 1269 701 309 55 66 chrX 32574088 32574600 -130025330 - L2 LINE L2 0 3313 2808 2231 103 109 3 chrX 32574906 32575235 -130024695 - L1PB3 LINE L1 -8 6146 5783 357 164 0 0 chrX 32575236 32575309 -130024621 + (TA)n Simple_repeat Simple_repeat 1 73 0 4454 166 27 22 chrX 32575322 32575798 -130024132 - L1PB3 LINE L1 -363 5791 5319 2545 60 0 0 chrX 32575798 32576098 -130023832 - AluY SINE Alu -11 300 1 4454 166 27 22 chrX 32576098 32577099 -130022831 - L1PB3 LINE L1 -835 5319 4289 309 286 0 48 chrX 32577118 32577202 -130022728 + L2 LINE L2 3234 3313 0 2626 243 41 11 chrX 32578129 32578770 -130021160 - L1ME3A LINE L1 0 6170 5511 885 254 28 14 chrX 32579199 32579416 -130020514 + MIR SINE MIR 42 261 -1 930 200 71 31 chrX 32579498 32579723 -130020207 + L1ME LINE L1 5538 5771 -399 1397 243 72 13 chrX 32579726 32580113 -130019817 - LTR16A1 LTR ERVL -44 413 4 212 306 0 61 chrX 32581054 32581152 -130018778 - L2 LINE L2 0 3313 3222 527 179 0 0 chrX 32581472 32581550 -130018380 + Tigger3(Golem) DNA MER2_type 2 79 -2950 757 160 8 0 chrX 32581558 32581677 -130018253 + Tigger3(Golem) DNA MER2_type 2910 3029 0 215 318 16 0 chrX 32582177 32582240 -130017690 + (CAG)n Simple_repeat Simple_repeat 1 64 0 190 329 13 0 chrX 32582247 32582323 -130017607 - MIR SINE MIR -30 232 156 300 246 15 0 chrX 32582323 32582388 -130017542 - MER2 DNA MER2_type 0 345 280 457 183 0 0 chrX 32582454 32582525 -130017405 + FLAM_C SINE Alu 37 107 -36 1053 129 117 0 chrX 32582525 32582688 -130017242 - MER2 DNA MER2_type -163 182 1 279 319 21 21 chrX 32582708 32582802 -130017128 - MIR SINE MIR -150 112 19 467 241 173 0 chrX 32582856 32583018 -130016912 + MIR SINE MIR 67 256 -6 1272 88 26 31 chrX 32583712 32583906 -130016024 - L1PA13 LINE L1 0 6163 5971 1597 223 67 18 chrX 32583906 32584399 -130015531 - L1M4 LINE L1 -2938 3208 2692 23 0 0 0 chrX 32584399 32584422 -130015508 + AT_rich Low_complexity Low_complexity 1 23 0 1007 201 31 38 chrX 32584750 32584887 -130015043 - L1M4 LINE L1 -3609 2537 2401 1908 140 21 7 chrX 32584887 32585173 -130014757 - AluJo SINE Alu -21 291 2 1007 201 31 38 chrX 32585173 32585324 -130014606 - L1M4 LINE L1 -3745 2401 2251 362 253 74 0 chrX 32585791 32585886 -130014044 + MIR SINE MIR 88 189 -73 212 259 74 0 chrX 32587023 32587077 -130012853 + MER5A DNA MER1_type 64 121 -68 30 0 0 0 chrX 32587719 32587749 -130012181 + AT_rich Low_complexity Low_complexity 1 30 0 7121 61 11 2 chrX 32589124 32590239 -130009691 + L1PA8A LINE L1 5006 6128 -3 296 258 121 16 chrX 32590294 32590418 -130009512 + L2 LINE L2 3177 3313 0 189 269 58 0 chrX 32590471 32590523 -130009407 + MIR SINE MIR 118 172 -90 1478 252 51 22 chrX 32590560 32590969 -130008961 + LTR16A LTR ERVL 21 441 -9 632 208 44 128 chrX 32591170 32591327 -130008603 + MIR SINE MIR 2 136 -126 2017 142 13 3 chrX 32591327 32591636 -130008294 + AluSx SINE Alu 1 312 0 632 208 44 128 chrX 32591636 32591704 -130008226 + MIR SINE MIR 136 208 -54 534 302 131 37 chrX 32591905 32592233 -130007697 + LTR16A LTR ERVL 92 450 0 2598 40 0 0 chrX 32592803 32593100 -130006830 - AluY SINE Alu -14 297 1 1773 171 0 0 chrX 32594524 32594804 -130005126 - AluJb SINE Alu -32 280 1 365 306 65 8 chrX 32594806 32594930 -130005000 - L2 LINE L2 0 3272 3142 791 180 170 5 chrX 32594983 32595177 -130004753 - MIR SINE MIR -21 241 16 251 72 24 108 chrX 32595352 32595435 -130004495 + (GA)n Simple_repeat Simple_repeat 1 76 0 613 203 0 8 chrX 32595582 32595700 -130004230 + MER103 DNA DNA 3 119 -47 218 196 36 18 chrX 32596169 32596225 -130003705 + CT-rich Low_complexity Low_complexity 2 58 0 588 310 88 5 chrX 32596646 32596862 -130003068 + MIR SINE MIR 27 260 -2 281 256 0 35 chrX 32597302 32597388 -130002542 + LTR67 LTR ERVL 460 542 -15 2950 9 0 0 chrX 32597939 32598256 -130001674 + AluYb8 SINE Alu 1 317 -1 263 303 13 13 chrX 32599273 32599349 -130000581 + MIR3 SINE MIR 117 192 -16 402 264 71 13 chrX 32599773 32599928 -130000002 + MER103 DNA DNA 1 164 -2 2145 180 25 0 chrX 32600000 32600356 -129999574 + MLT1A1 LTR MaLR 1 365 0 2496 144 48 0 chrX 32600356 32600753 -129999177 + MLT1A1-int LTR MaLR 1 416 -1319 3081 204 34 42 chrX 32600762 32601089 -129998841 + MLT1A1-int LTR MaLR 1044 1372 -363 1798 128 64 4 chrX 32601089 32601370 -129998560 - AluSx SINE Alu -14 298 1 3081 204 34 42 chrX 32601370 32601739 -129998191 + MLT1A1-int LTR MaLR 1372 1735 0 1849 158 128 18 chrX 32601739 32602068 -129997862 + MLT1A1 LTR MaLR 1 365 0 285 98 0 0 chrX 32604326 32604367 -129995563 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 97 0 0 chrX 32604368 32604399 -129995531 + (GA)n Simple_repeat Simple_repeat 2 32 0 219 295 26 26 chrX 32604437 32604515 -129995415 + MIR SINE MIR 117 194 -68 1937 207 42 28 chrX 32604560 32605033 -129994897 - Charlie4a DNA MER1_type 0 508 29 2245 126 0 0 chrX 32605252 32605561 -129994369 - AluSx SINE Alu -3 309 1 879 123 0 39 chrX 32606918 32607048 -129992882 + FLAM_C SINE Alu 1 125 -8 189 299 0 30 chrX 32607490 32607557 -129992373 - MIR SINE MIR -18 244 180 603 272 71 16 chrX 32607640 32607824 -129992106 + MIR SINE MIR 20 213 -49 212 100 25 0 chrX 32607851 32607891 -129992039 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 267 31 0 0 chrX 32608913 32608945 -129990985 + (GA)n Simple_repeat Simple_repeat 1 32 0 12976 24 1 2 chrX 32609553 32611743 -129988187 + L1PA4 LINE L1 3962 6150 -5 307 305 114 48 chrX 32611766 32611950 -129987980 - MIR SINE MIR -63 145 5 305 140 18 0 chrX 32612102 32612159 -129987771 + (TG)n Simple_repeat Simple_repeat 1 58 0 390 320 33 0 chrX 32612260 32612382 -129987548 + MIR SINE MIR 71 196 -66 203 213 0 0 chrX 32613320 32613367 -129986563 + L2 LINE L2 3267 3313 0 407 303 26 32 chrX 32614048 32614203 -129985727 - L2 LINE L2 -369 2945 2792 835 260 198 11 chrX 32614205 32614563 -129985367 - L2 LINE L2 -1100 2214 1790 1482 137 103 0 chrX 32614566 32614799 -129985131 - Tigger3(Golem) DNA MER2_type -2 3027 2771 821 156 0 106 chrX 32614795 32614955 -129984975 - Tigger3(Golem) DNA MER2_type -2886 143 1 * 760 267 136 13 chrX 32614966 32615341 -129984589 - L2 LINE L2 -1537 1777 1357 2180 125 3 0 chrX 32615400 32615703 -129984227 + AluSx SINE Alu 1 304 -8 1107 139 5 27 chrX 32616189 32616376 -129983554 - MER5A DNA MER1_type -1 188 6 231 270 220 0 chrX 32617972 32618072 -129981858 + L2 LINE L2 3151 3272 0 2144 130 0 10 chrX 32618701 32619008 -129980922 - AluSx SINE Alu -8 304 1 180 307 33 78 chrX 32619273 32619426 -129980504 - MIR SINE MIR -10 252 107 380 319 106 65 chrX 32619798 32620090 -129979840 + L3 LINE CR1 1241 1544 -33 1740 237 67 12 chrX 32620696 32621190 -129978740 + L1ME3 LINE L1 5589 6109 -53 383 230 50 60 chrX 32621476 32621576 -129978354 + MIR SINE MIR 45 143 -65 430 171 23 23 chrX 32621595 32621683 -129978247 - L2 LINE L2 0 3313 3226 405 212 136 15 chrX 32622250 32622382 -129977548 - LTR16C LTR ERVL 0 491 344 361 274 23 21 chrX 32622793 32622939 -129976991 + L1MC5 LINE L1 7845 8042 0 199 368 15 0 chrX 32623189 32623257 -129976673 - MIR SINE MIR -119 143 75 197 227 23 0 chrX 32623579 32623623 -129976307 - L2 LINE L2 -13 3259 3215 1310 245 49 83 chrX 32624567 32625074 -129974856 + LTR16C LTR ERVL 1 490 -1 1329 274 62 8 chrX 32625340 32625709 -129974221 + LTR16A LTR ERVL 62 450 0 439 309 120 52 chrX 32625711 32626227 -129973703 + L2 LINE L2 2449 3000 -272 219 225 0 0 chrX 32626227 32626267 -129973663 + (CA)n Simple_repeat Simple_repeat 2 41 0 842 262 66 50 chrX 32626356 32626718 -129973212 - LTR16C LTR ERVL -4 487 120 195 351 53 9 chrX 32627336 32627450 -129972480 - MIR3 SINE MIR -8 200 82 256 242 36 91 chrX 32627615 32627632 -129972298 - L1MA10 LINE L1 -2 6332 6316 3591 208 28 35 chrX 32627632 32628477 -129971453 - L1ME2 LINE L1 -9 6155 5317 5566 112 2 50 chrX 32628481 32629358 -129970572 + L1PA16 LINE L1 5323 6157 -9 1266 177 42 21 chrX 32629376 32629721 -129970209 - L1ME2 LINE L1 -816 5330 4990 311 303 68 25 chrX 32629944 32630106 -129969824 + MIR SINE MIR 81 249 -13 598 256 6 28 chrX 32630769 32630945 -129968985 + MIR SINE MIR 91 262 0 1408 256 63 37 chrX 32631779 32632601 -129967329 + MER45C DNA AcHobo 3 953 0 490 231 48 43 chrX 32632655 32632877 -129967053 - MLT1J1 LTR MaLR -228 222 1 288 273 23 0 chrX 32633082 32633170 -129966760 - Charlie7 DNA MER1_type 0 2612 2523 22 0 0 0 chrX 32633221 32633243 -129966687 + AT_rich Low_complexity Low_complexity 1 22 0 1308 257 57 48 chrX 32633406 32634195 -129965735 - L2 LINE L2 -3 3310 2516 321 326 81 40 chrX 32634199 32634738 -129965192 + L2 LINE L2 2715 3308 -5 1011 211 14 14 chrX 32636112 32636335 -129963595 - L1ME3A LINE L1 -5 6165 5943 332 260 29 10 chrX 32636435 32636539 -129963391 + MLT1H LTR MaLR 84 189 -360 273 202 101 56 chrX 32636623 32636712 -129963218 + MLT1K LTR MaLR 304 396 -146 686 264 43 40 chrX 32638439 32638860 -129961070 - MLT1H1 LTR MaLR 0 555 94 341 229 29 0 chrX 32639054 32639124 -129960806 + L2 LINE L2 3201 3272 0 977 295 61 35 chrX 32639137 32639564 -129960366 + MLT1J2 LTR MaLR 1 438 -12 2121 230 35 101 chrX 32640016 32640651 -129959279 + MLT1E LTR MaLR 1 593 0 347 265 69 123 chrX 32641169 32641501 -129958429 + Charlie8 DNA MER1_type 151 464 -1953 265 203 34 0 chrX 32641526 32641585 -129958345 + Charlie8 DNA MER1_type 1365 1425 -992 345 325 175 12 chrX 32642329 32642414 -129957516 + L2 LINE L2 2152 2222 -1092 16069 117 53 5 chrX 32642414 32644716 -129955214 + Tigger1 DNA MER2_type 1 2414 -4 345 325 175 12 chrX 32644716 32645030 -129954900 + L2 LINE L2 2222 2616 -698 1482 99 0 5 chrX 32645050 32645251 -129954679 - L1PB1 LINE L1 -1 6150 5951 931 47 0 0 chrX 32645278 32645385 -129954545 - L1PA3 LINE L1 -4 6151 6045 3521 34 0 0 chrX 32645385 32645797 -129954133 + L1P LINE L1 4682 5093 -1053 * 4929 112 12 34 chrX 32645792 32646012 -129953918 - L1PB1 LINE L1 -176 5975 5752 438 69 0 0 chrX 32646012 32646070 -129953860 + (TA)n Simple_repeat Simple_repeat 1 58 0 4929 112 12 34 chrX 32646070 32646754 -129953176 - L1PB1 LINE L1 -399 5752 5091 622 292 12 6 chrX 32647901 32648069 -129951861 + MIR SINE MIR 3 171 -91 2299 136 72 49 chrX 32648265 32648736 -129951194 + L1MB7 LINE L1 5703 6184 0 422 294 56 8 chrX 32649017 32649143 -129950787 + MLT1K LTR MaLR 144 275 -313 370 295 0 0 chrX 32649273 32649368 -129950562 + MLT1K LTR MaLR 481 575 -13 901 247 31 9 chrX 32650710 32650933 -129948997 + MIR SINE MIR 34 261 -1 315 211 7 34 chrX 32651058 32651205 -129948725 + (TA)n Simple_repeat Simple_repeat 2 144 0 191 320 100 20 chrX 32651451 32651551 -129948379 - MIR3 SINE MIR -96 112 5 * 211 289 67 10 chrX 32651509 32651613 -129948317 + MIR SINE MIR 93 202 -60 828 229 70 37 chrX 32652534 32652748 -129947182 + MIR SINE MIR 28 248 -14 221 314 71 29 chrX 32652771 32652911 -129947019 + L2 LINE L2 2891 3036 -236 2452 165 62 19 chrX 32653088 32653568 -129946362 + L1MB8 LINE L1 5672 6172 -6 320 316 30 45 chrX 32653953 32654086 -129945844 - MIR3 SINE MIR -75 133 3 245 348 43 14 chrX 32654319 32654457 -129945473 + MIR SINE MIR 6 147 -115 382 291 60 20 chrX 32654797 32654948 -129944982 - MIR SINE MIR -72 190 34 1301 266 102 22 chrX 32656093 32656545 -129943385 + LTR16C LTR ERVL 4 491 0 426 162 49 84 chrX 32657518 32657650 -129942280 - MLT1H LTR MaLR -14 533 361 242 308 140 0 chrX 32658001 32658108 -129941822 + L2 LINE L2 3116 3237 -35 183 42 0 0 chrX 32658159 32658183 -129941747 + (AATAG)n Simple_repeat Simple_repeat 4 27 0 212 243 86 14 chrX 32658670 32658740 -129941190 - MIR SINE MIR -2 260 186 302 316 75 0 chrX 32658877 32659010 -129940920 + MIR3 SINE MIR 5 147 -61 5038 144 83 24 chrX 32659019 32659379 -129940551 - MER4D LTR ERV1 0 903 566 1475 190 63 7 chrX 32659379 32659663 -129940267 - AluJo SINE Alu -10 302 3 5038 144 83 24 chrX 32659663 32660154 -129939776 - MER4D LTR ERV1 -337 566 1 202 214 71 36 chrX 32660731 32660787 -129939143 - L2 LINE L2 -61 3252 3195 468 0 0 0 chrX 32660797 32660849 -129939081 + (TG)n Simple_repeat Simple_repeat 2 53 0 4641 136 15 9 chrX 32661698 32662476 -129937454 - L1PA16 LINE L1 -162 6004 5223 21 36 0 0 chrX 32662507 32662535 -129937395 + AT_rich Low_complexity Low_complexity 1 28 0 638 107 0 0 chrX 32662579 32662663 -129937267 - THE1C LTR MaLR 0 428 345 1121 130 16 27 chrX 32662665 32662849 -129937081 - THE1C LTR MaLR -190 185 4 11362 116 27 7 chrX 32662852 32664400 -129935530 - THE1C-int LTR MaLR 0 1580 1 1896 161 70 14 chrX 32664400 32664755 -129935175 - THE1C LTR MaLR 0 375 1 1798 189 27 6 chrX 32664977 32665342 -129934588 + L1ME2 LINE L1 5533 5905 -259 380 246 98 16 chrX 32665343 32665485 -129934445 + L1ME2 LINE L1 5990 6304 -30 1309 248 115 30 chrX 32667403 32667907 -129932023 - MLT1H1 LTR MaLR -4 551 5 314 324 88 7 chrX 32668355 32668491 -129931439 - MIR SINE MIR -103 159 13 256 354 8 39 chrX 32669493 32669620 -129930310 - L2 LINE L2 -3 3269 3147 704 301 80 62 chrX 32669805 32670646 -129929284 - L1MEd LINE L1 -5235 884 29 378 221 116 0 chrX 32671981 32672076 -129927854 + L2 LINE L2 1860 1965 -1349 270 0 0 0 chrX 32672453 32672483 -129927447 + (TA)n Simple_repeat Simple_repeat 2 31 0 472 147 26 42 chrX 32672634 32672747 -129927183 + L1ME LINE L1 5686 5796 -370 275 98 0 0 chrX 32672756 32672797 -129927133 - Alu SINE Alu -9 293 253 4645 81 10 0 chrX 32672797 32673380 -129926550 + L1PA13 LINE L1 5573 6161 -2 351 175 0 0 chrX 32674253 32674310 -129925620 - L2 LINE L2 -2 3311 3255 551 224 81 89 chrX 32675323 32675821 -129924109 - MLT1H LTR MaLR 0 549 1 278 324 26 2 chrX 32675845 32675964 -129923966 + MIR SINE MIR 25 146 -72 189 269 104 60 chrX 32676017 32676084 -129923846 - L2 LINE L2 -12 3260 3191 492 280 20 17 chrX 32676417 32676558 -129923372 - MIR3 SINE MIR -10 198 56 423 0 0 0 chrX 32676747 32676794 -129923136 + (A)n Simple_repeat Simple_repeat 1 47 0 314 267 10 50 chrX 32676937 32677038 -129922892 - MIR3 SINE MIR -54 154 58 1985 147 3 0 chrX 32677147 32677447 -129922483 - AluSx SINE Alu -11 301 1 23 0 0 0 chrX 32677720 32677743 -129922187 + AT_rich Low_complexity Low_complexity 1 23 0 398 308 71 63 chrX 32678107 32678360 -129921570 - MIR SINE MIR -3 259 5 442 206 199 22 chrX 32678659 32678795 -129921135 - MER5A DNA MER1_type -21 168 9 638 228 74 7 chrX 32678829 32678978 -129920952 + MIR SINE MIR 104 262 0 756 184 0 32 chrX 32679573 32679698 -129920232 + FLAM_A SINE Alu 3 123 -10 327 254 32 32 chrX 32679713 32679839 -129920091 + Charlie7 DNA MER1_type 31 156 -2456 1013 232 69 67 chrX 32679994 32680443 -129919487 + MLT1J2 LTR MaLR 1 450 0 540 315 39 11 chrX 32680565 32680746 -129919184 + MIR SINE MIR 3 188 -74 2168 164 55 6 chrX 32681164 32681512 -129918418 + MLT1A1 LTR MaLR 1 365 0 766 246 34 0 chrX 32681608 32681783 -129918147 - MER5A DNA MER1_type 0 189 9 229 228 30 119 chrX 32681797 32681898 -129918032 - L3 LINE CR1 -298 1279 1188 618 297 62 83 chrX 32682032 32682487 -129917443 - L2 LINE L2 -11 3261 2817 323 225 7 35 chrX 32682979 32683121 -129916809 + GA-rich Low_complexity Low_complexity 1 138 0 195 222 0 0 chrX 32683180 32683225 -129916705 + GA-rich Low_complexity Low_complexity 3 47 0 696 274 78 10 chrX 32683372 32683607 -129916323 + MIR SINE MIR 1 251 -11 201 121 0 0 chrX 32684086 32684119 -129915811 - L2 LINE L2 -1 3271 3239 402 280 20 0 chrX 32684725 32684825 -129915105 + MIR SINE MIR 53 154 -108 532 347 44 7 chrX 32684851 32685122 -129914808 - MLT1J LTR MaLR 0 511 231 344 216 0 26 chrX 32685117 32685206 -129914724 - MLT1J2 LTR MaLR -253 158 71 * 305 343 21 29 chrX 32685291 32685431 -129914499 + L2 LINE L2 3134 3272 0 676 204 32 38 chrX 32685573 32685730 -129914200 - MER91B DNA MER1_type 0 190 35 322 362 37 6 chrX 32685979 32686142 -129913788 + MIR SINE MIR 49 216 -46 475 247 38 86 chrX 32686213 32686399 -129913531 + MIR SINE MIR 52 228 -34 225 330 11 0 chrX 32687856 32687944 -129911986 - MIR SINE MIR -71 191 103 1140 224 31 8 chrX 32687950 32688205 -129911725 - MIR SINE MIR 0 262 2 1908 129 37 0 chrX 32688879 32689189 -129910741 + AluSx SINE Alu 1 320 0 1349 243 44 3 chrX 32689503 32689820 -129910110 - LTR16C LTR ERVL -9 482 153 490 248 0 40 chrX 32689975 32690100 -129909830 - MLT1K LTR MaLR -5 583 464 390 212 106 73 chrX 32690190 32690369 -129909561 - MLT1K LTR MaLR -132 456 272 3990 124 41 5 chrX 32690391 32691004 -129908926 + L1MA8 LINE L1 5651 6285 -6 257 319 0 0 chrX 32691035 32691126 -129908804 - L1MC4 LINE L1 -1338 6704 6614 403 330 0 0 chrX 32691130 32691242 -129908688 - MLT1K LTR MaLR -326 262 151 863 205 105 5 chrX 32691314 32691504 -129908426 + MER63A DNA MER1_type 2 210 0 511 232 32 16 chrX 32691776 32691901 -129908029 + L2 LINE L2 3187 3313 0 297 0 0 0 chrX 32693224 32693257 -129906673 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 333 0 0 0 chrX 32693256 32693293 -129906637 + (GA)n Simple_repeat Simple_repeat 1 37 0 336 251 123 43 chrX 32693413 32693576 -129906354 - MIR SINE MIR 0 262 87 239 325 90 18 chrX 32693908 32694074 -129905856 - L2 LINE L2 -22 3291 3114 905 250 0 27 chrX 32694080 32694304 -129905626 - MIR SINE MIR -43 219 2 1795 205 143 28 chrX 32694500 32694963 -129904967 - MLT1F LTR MaLR -9 533 18 882 283 217 36 chrX 32695602 32696217 -129903713 - L2 LINE L2 -38 3234 2523 22 0 0 0 chrX 32696531 32696553 -129903377 + AT_rich Low_complexity Low_complexity 1 22 0 1632 163 53 115 chrX 32696684 32697031 -129902899 - MLT1A2 LTR MaLR 0 374 7 210 37 0 0 chrX 32697031 32697058 -129902872 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2043 129 0 4 chrX 32697064 32697342 -129902588 - AluSx SINE Alu -35 277 1 1632 163 53 115 chrX 32697342 32697386 -129902544 - MLT1A2 LTR MaLR -328 46 1 459 277 78 40 chrX 32697496 32697808 -129902122 + L1ME4a LINE L1 4884 5183 -938 1514 169 0 54 chrX 32697808 32698104 -129901826 + AluJo SINE Alu 33 312 0 459 277 78 40 chrX 32698104 32698842 -129901088 + L1ME4a LINE L1 5183 5969 -152 758 183 18 12 chrX 32698851 32699015 -129900915 + MER104 DNA Tc2 13 177 -3 303 307 35 35 chrX 32699925 32700039 -129899891 + MIR SINE MIR 40 153 -55 280 254 0 42 chrX 32700377 32700448 -129899482 - MIR SINE MIR -78 184 117 1037 227 37 19 chrX 32701087 32701303 -129898627 + MER58A DNA MER1_type 4 223 -1 217 162 0 0 chrX 32701743 32701780 -129898150 - MIR3 SINE MIR -22 186 150 2460 128 25 0 chrX 32702042 32702395 -129897535 - THE1B LTR MaLR -2 362 1 322 388 63 34 chrX 32703334 32703571 -129896359 - L2 LINE L2 -9 3263 3020 408 313 162 35 chrX 32703596 32703923 -129896007 - L2 LINE L2 -1253 2061 1777 195 42 0 0 chrX 32703923 32703947 -129895983 + (TG)n Simple_repeat Simple_repeat 2 25 0 408 313 162 35 chrX 32703947 32704299 -129895631 - L2 LINE L2 -1537 1777 1296 324 206 59 0 chrX 32706739 32706807 -129893123 - MER5A DNA MER1_type -77 112 41 1062 312 213 10 chrX 32707361 32708083 -129891847 - L3 LINE CR1 -109 1468 600 198 209 0 0 chrX 32708321 32708364 -129891566 + GA-rich Low_complexity Low_complexity 1 43 0 664 261 77 24 chrX 32709664 32709771 -129890159 + L1ME3A LINE L1 5615 5715 -455 766 128 80 70 chrX 32709771 32709958 -129889972 - MER53 DNA DNA 0 189 1 664 261 77 24 chrX 32709958 32710137 -129889793 + L1ME3A LINE L1 5715 5916 -254 21 36 0 0 chrX 32710159 32710187 -129889743 + AT_rich Low_complexity Low_complexity 1 28 0 398 344 102 5 chrX 32710573 32710788 -129889142 - L2 LINE L2 -220 3052 2817 319 372 53 76 chrX 32711334 32711689 -129888241 - L2 LINE L2 -5 3267 2921 278 357 39 0 chrX 32712479 32712608 -129887322 - MIR SINE MIR -20 242 109 260 315 123 8 chrX 32713238 32713368 -129886562 - MIR3 SINE MIR -43 165 21 1398 159 23 5 chrX 32713643 32713863 -129886067 + MER58A DNA MER1_type 1 224 0 219 184 61 0 chrX 32714494 32714543 -129885387 - MIR3 SINE MIR -42 166 115 193 276 105 72 chrX 32715315 32715373 -129884557 - MIR3 SINE MIR -49 159 104 2152 248 74 25 chrX 32715373 32716005 -129883925 + MLT2F LTR ERVL 1 663 0 193 276 105 72 chrX 32716005 32716098 -129883832 - MIR3 SINE MIR -104 104 3 622 286 17 42 chrX 32716984 32717222 -129882708 + L2 LINE L2 2867 3098 -215 226 167 17 133 chrX 32717439 32717499 -129882431 - MER91C DNA MER1_type -63 77 25 409 333 56 0 chrX 32719819 32719963 -129879967 - MIR3 SINE MIR -24 184 33 263 213 40 40 chrX 32720726 32720801 -129879129 - MIR3 SINE MIR -49 159 85 5304 194 26 35 chrX 32720996 32722626 -129877304 - L1MD2 LINE L1 -16 6737 5124 936 210 41 0 chrX 32722626 32722869 -129877061 + MER69 DNA AcHobo 2183 2435 -91 3824 208 64 65 chrX 32722899 32724094 -129875836 - L1MD2 LINE L1 -1425 5115 3922 * 16432 170 22 9 chrX 32724092 32727860 -129872070 - L1MA5 LINE L1 -295 7424 3610 252 0 0 0 chrX 32727864 32727892 -129872038 + (TC)n Simple_repeat Simple_repeat 2 29 0 238 214 83 0 chrX 32727892 32727976 -129871954 + L1MC4 LINE L1 6614 6704 -1338 207 170 43 0 chrX 32727976 32728023 -129871907 + (TA)n Simple_repeat Simple_repeat 1 49 0 1590 186 4 7 chrX 32728026 32728300 -129871630 - AluJo SINE Alu -33 279 7 3757 237 54 32 chrX 32728305 32729640 -129870290 - L1MA5 LINE L1 -3960 3605 2242 1396 239 54 10 chrX 32729655 32730323 -129869607 - L1MD2 LINE L1 -3639 2901 2212 2450 89 48 20 chrX 32730323 32730801 -129869129 - LTR12 LTR ERV1 0 714 351 2970 205 74 21 chrX 32730801 32730844 -129869086 - L1MD2 LINE L1 -4628 1912 1873 279 0 0 0 chrX 32730844 32730875 -129869055 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2970 205 74 21 chrX 32730875 32731890 -129868040 - L1MD2 LINE L1 -4667 1873 828 302 333 29 0 chrX 32732017 32732122 -129867808 - L1MD2 LINE L1 -6120 423 316 686 256 5 44 chrX 32732416 32732619 -129867311 - L1MD2 LINE L1 -6329 211 17 55 48 0 0 chrX 32733090 32733173 -129866757 + AT_rich Low_complexity Low_complexity 1 83 0 38 68 0 0 chrX 32733386 32733459 -129866471 + AT_rich Low_complexity Low_complexity 1 73 0 563 287 62 21 chrX 32734334 32734720 -129865210 - L1MEc LINE L1 -855 1635 1306 372 298 58 78 chrX 32734752 32734994 -129864936 - L1MEc LINE L1 -4970 1149 913 2155 109 41 0 chrX 32735005 32735299 -129864631 + AluY SINE Alu 1 306 -5 21 57 0 0 chrX 32736022 32736057 -129863873 + AT_rich Low_complexity Low_complexity 1 35 0 589 341 108 45 chrX 32736456 32737504 -129862426 - L2 LINE L2 -2 3270 2150 282 321 88 23 chrX 32737874 32738089 -129861841 + L3b LINE CR1 1273 1501 -82 320 298 107 45 chrX 32738179 32738421 -129861509 + L2 LINE L2 2833 3089 -183 323 295 84 48 chrX 32738437 32738603 -129861327 - L2 LINE L2 -6 3307 3136 354 299 28 36 chrX 32738626 32738785 -129861145 - MLT1J1 LTR MaLR -46 465 243 1034 186 49 39 chrX 32738792 32738996 -129860934 + MER3 DNA MER1_type 1 206 -3 1322 228 115 29 chrX 32739122 32739538 -129860392 - HsTC2 DNA Tc2 0 1900 1273 * 3660 195 39 1 chrX 32739535 32740185 -129859745 - HsTC2 DNA Tc2 -1153 745 72 212 231 0 0 chrX 32740334 32740373 -129859557 + polypurine Low_complexity Low_complexity 2 40 0 237 159 0 0 chrX 32740413 32740457 -129859473 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 208 274 24 71 chrX 32742152 32742236 -129857694 - MIR SINE MIR -81 181 102 464 235 204 0 chrX 32742591 32742723 -129857207 - MLT1G1 LTR MaLR -14 528 370 719 219 164 44 chrX 32742760 32743034 -129856896 - MLT1G1 LTR MaLR -283 312 6 30 27 0 0 chrX 32743223 32743260 -129856670 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chrX 32743752 32743784 -129856146 + AT_rich Low_complexity Low_complexity 1 32 0 295 323 42 10 chrX 32744136 32744232 -129855698 - MIR3 SINE MIR -105 103 5 4042 112 11 4 chrX 32745226 32745779 -129854151 + L1PA15 LINE L1 5608 6164 -1 299 271 153 42 chrX 32745894 32746038 -129853892 + MIR3 SINE MIR 46 205 -3 203 298 71 0 chrX 32746892 32746976 -129852954 + L2 LINE L2 2961 3050 -222 554 309 72 39 chrX 32747094 32747560 -129852370 - MLT1K LTR MaLR 0 588 78 249 240 0 0 chrX 32747635 32747685 -129852245 + L2 LINE L2 3205 3254 -18 1647 274 21 38 chrX 32748413 32748986 -129850944 - MER115 DNA AcHobo -7 686 34 342 0 0 0 chrX 32749103 32749141 -129850789 + (CA)n Simple_repeat Simple_repeat 1 38 0 1138 308 65 38 chrX 32749338 32749816 -129850114 + LTR16C LTR ERVL 1 491 0 506 335 7 0 chrX 32749882 32750034 -129849896 - MIR SINE MIR -105 157 5 207 379 0 0 chrX 32750186 32750273 -129849657 + MIR SINE MIR 147 233 -29 375 253 94 24 chrX 32751487 32751671 -129848259 + MIR SINE MIR 32 220 -42 185 174 43 0 chrX 32751954 32752000 -129847930 - L2 LINE L2 -1553 1761 1714 319 139 125 28 chrX 32753655 32753727 -129846203 + LTR67 LTR ERVL 477 555 -2 647 305 109 52 chrX 32753743 32754182 -129845748 - L2 LINE L2 0 3272 2809 254 321 46 28 chrX 32754540 32754649 -129845281 + L2 LINE L2 2710 2820 -494 2690 212 52 118 chrX 32754715 32755976 -129843954 - L1MC4 LINE L1 -9 8033 6857 221 209 105 67 chrX 32755976 32756081 -129843849 - L2 LINE L2 -923 2391 2283 261 57 0 0 chrX 32756082 32756117 -129843813 + (CA)n Simple_repeat Simple_repeat 1 35 0 324 181 12 60 chrX 32756278 32756361 -129843569 + Charlie7 DNA MER1_type 29 107 -2505 294 206 38 46 chrX 32756346 32756477 -129843453 + Charlie7 DNA MER1_type 2434 2563 -49 * 329 318 107 34 chrX 32756494 32756821 -129843109 - L2 LINE L2 -1064 2250 1900 277 283 22 72 chrX 32757639 32757777 -129842153 + MIR SINE MIR 59 189 -73 1596 262 75 36 chrX 32757821 32758671 -129841259 - L2 LINE L2 0 3313 2422 261 309 18 45 chrX 32758745 32758855 -129841075 + MER117 DNA MER1_type 50 156 -41 1169 137 38 11 chrX 32758904 32759087 -129840843 + MER5A DNA MER1_type 1 188 -1 1143 134 0 11 chrX 32759808 32760054 -129839876 + AluJb SINE Alu 2 312 0 226 140 140 40 chrX 32760142 32760192 -129839738 + L1P3 LINE L1 689 743 -5132 1359 279 150 74 chrX 32760248 32761301 -129838629 - MER52A LTR ERV1 0 1755 623 293 320 155 53 chrX 32761508 32762129 -129837801 + L2 LINE L2 1919 2602 -712 273 255 166 82 chrX 32762123 32762491 -129837439 + L2 LINE L2 2839 3237 -35 * 295 340 107 7 chrX 32762937 32763087 -129836843 + L2 LINE L2 3104 3268 -4 871 272 168 37 chrX 32763687 32764091 -129835839 - LTR16A LTR ERVL 0 450 1 403 286 63 8 chrX 32764599 32764725 -129835205 - MIR3 SINE MIR -52 156 24 2281 106 0 0 chrX 32764770 32765071 -129834859 - AluSx SINE Alu -11 301 1 1125 229 40 8 chrX 32766284 32766533 -129833397 - MIR SINE MIR -2 260 4 510 227 100 0 chrX 32767812 32767922 -129832008 + MER96 DNA MER1_type? 13 133 -42 2985 68 3 0 chrX 32768588 32768955 -129830975 - L1PA6 LINE L1 0 6154 5787 1267 120 5 5 chrX 32769058 32769242 -129830688 - MER4E LTR ERV1 0 766 583 5327 110 26 62 chrX 32769245 32770102 -129829828 - LTR12 LTR ERV1 0 826 1 683 167 37 104 chrX 32770190 32770489 -129829441 - pTR5 LTR ERV1 -1418 1020 742 581 104 0 0 chrX 32770489 32770566 -129829364 - MADE1 DNA Mariner -1 79 3 983 101 0 63 chrX 32770566 32770724 -129829206 - MER4B LTR ERV1 -176 434 287 1721 168 46 37 chrX 32770724 32771102 -129828828 + MSTA LTR MaLR 1 428 0 1872 101 3 51 chrX 32771102 32771398 -129828532 - MER4B LTR ERV1 -319 291 10 320 317 50 0 chrX 32771438 32771558 -129828372 - L3b LINE CR1 -202 1381 1256 500 271 180 28 chrX 32773098 32773353 -129826577 - LTR16C LTR ERVL -9 482 189 243 350 48 0 chrX 32774554 32774657 -129825273 + MLT1K LTR MaLR 141 248 -340 578 242 73 64 chrX 32774703 32774750 -129825180 + MLT1K LTR MaLR 368 413 -175 2831 16 0 13 chrX 32774750 32775065 -129824865 + AluYa5 SINE Alu 1 311 0 578 242 73 64 chrX 32775065 32775236 -129824694 + MLT1K LTR MaLR 413 588 0 1131 216 73 70 chrX 32775324 32775709 -129824221 + MLT1C LTR MaLR 76 461 -6 36 0 0 0 chrX 32775770 32775806 -129824124 + AT_rich Low_complexity Low_complexity 1 36 0 715 269 14 55 chrX 32775920 32776139 -129823791 + MIR SINE MIR 43 252 -10 360 161 12 37 chrX 32776202 32776283 -129823647 + L1M4 LINE L1 2933 3011 -3135 * 942 214 0 48 chrX 32776282 32776394 -129823536 + L1M4 LINE L1 3796 3912 -2234 767 158 0 22 chrX 32776394 32776533 -129823397 + L1PA8 LINE L1 6037 6172 0 942 214 0 48 chrX 32776533 32776609 -129823321 + L1M4 LINE L1 3912 3972 -2174 485 70 127 0 chrX 32776609 32776680 -129823250 - MADE1 DNA Mariner 0 80 1 942 214 0 48 chrX 32776680 32776738 -129823192 + L1M4 LINE L1 3972 4031 -2115 1994 128 14 7 chrX 32776759 32777088 -129822842 + AluSx SINE Alu 1 331 0 4935 88 24 15 chrX 32777093 32777765 -129822165 - L1PA12 LINE L1 -15 6153 5476 942 37 0 0 chrX 32777780 32777889 -129822041 - L1PA4 LINE L1 -3 6152 6044 17642 165 27 6 chrX 32777889 32779633 -129820297 - L1PA12 LINE L1 -678 5483 3777 180 0 0 0 chrX 32779633 32779653 -129820277 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 17642 165 27 6 chrX 32779653 32781272 -129818658 - L1PA12 LINE L1 -2384 3777 2059 734 151 9 0 chrX 32781275 32781381 -129818549 - U6 snRNA snRNA 0 107 1 1094 214 48 45 chrX 32781389 32781767 -129818163 + L1M4 LINE L1 4033 4411 -1735 236 269 0 0 chrX 32781767 32781819 -129818111 + Tigger5 DNA MER2_type 4 55 -2268 * 315 235 15 15 chrX 32781788 32781856 -129818074 + Tigger5 DNA MER2_type 2251 2318 -5 470 213 2 0 chrX 32781859 32781960 -129817970 - Tigger5 DNA MER2_type -2235 88 7 502 200 0 0 chrX 32781975 32782060 -129817870 + Tigger5 DNA MER2_type 2239 2323 0 1848 192 76 20 chrX 32782061 32782565 -129817365 + L1MD2 LINE L1 5665 6136 -223 13577 195 47 17 chrX 32782566 32783095 -129816835 + L1MB3 LINE L1 4 515 -5901 783 183 0 29 chrX 32783095 32783232 -129816698 + FLAM_C SINE Alu 1 133 0 13577 195 47 17 chrX 32783232 32786538 -129813392 + L1MB3 LINE L1 515 4174 -2242 3120 144 20 6 chrX 32786538 32787045 -129812885 + MER75 DNA T2_type 1 514 0 13577 195 47 17 chrX 32787045 32788596 -129811334 + L1MB3 LINE L1 4174 5676 -740 30055 106 29 69 chrX 32788598 32790763 -129809167 + L1PA7 LINE L1 1 2251 -3903 2309 91 3 3 chrX 32790763 32791071 -129808859 - AluY SINE Alu -3 308 1 30055 106 29 69 chrX 32791071 32791525 -129808405 + L1PA7 LINE L1 2251 2722 -3432 231 88 0 0 chrX 32791525 32791559 -129808371 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 30055 106 29 69 chrX 32791559 32793195 -129806735 + L1PA7 LINE L1 2722 4422 -1732 2726 16 0 3 chrX 32793195 32793498 -129806432 + AluYa5 SINE Alu 1 302 -9 30055 106 29 69 chrX 32793498 32795658 -129804272 + L1PA7 LINE L1 4422 6154 0 4205 163 12 3 chrX 32795666 32796413 -129803517 + L1MB3 LINE L1 5664 6417 -2 229 292 0 0 chrX 32796461 32796526 -129803404 - MIR SINE MIR -9 253 189 350 219 237 6 chrX 32796544 32796689 -129803241 - MER5A DNA MER1_type 0 189 6 308 258 67 22 chrX 32797620 32797709 -129802221 - L1ME2 LINE L1 0 6164 6072 597 65 103 0 chrX 32797730 32798132 -129801798 + (TA)n Simple_repeat Simple_repeat 1 443 0 455 225 132 61 chrX 32798525 32798806 -129801124 - MLT1H LTR MaLR -214 335 1 771 115 0 16 chrX 32799414 32799536 -129800394 + MER2 DNA MER2_type 88 207 -138 672 245 65 0 chrX 32799613 32799876 -129800054 + L1MD2 LINE L1 2376 2657 -3883 6778 125 7 3 chrX 32799893 32801813 -129798117 - L1PA13 LINE L1 -47 6116 4192 1629 238 14 2 chrX 32801811 32802231 -129797699 + L1MD2 LINE L1 2654 3078 -3462 * 1375 89 0 38 chrX 32802235 32802448 -129797482 - AluY SINE Alu 0 311 107 1783 253 37 9 chrX 32802449 32803101 -129796829 + L1MD2 LINE L1 3070 3739 -2801 4524 226 48 44 chrX 32803148 32804273 -129795657 + L1MD2 LINE L1 4081 5200 -1553 240 86 0 0 chrX 32804273 32804308 -129795622 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4524 226 48 44 chrX 32804308 32805828 -129794102 + L1MD2 LINE L1 5200 6740 -13 2449 70 0 0 chrX 32806026 32806327 -129793603 - AluY SINE Alu -10 301 1 1754 247 80 8 chrX 32806491 32806968 -129792962 - MLT1E2 LTR MaLR 0 626 116 8220 178 50 11 chrX 32806972 32807018 -129792912 - L1MB2 LINE L1 0 6407 6364 2352 90 3 0 chrX 32807018 32807318 -129792612 - AluSp SINE Alu -12 301 1 8220 178 50 11 chrX 32807318 32809729 -129790201 - L1MB2 LINE L1 -43 6364 3844 3733 238 70 21 chrX 32809733 32810744 -129789186 - L1MB2 LINE L1 -2866 3516 2556 1288 115 0 10 chrX 32810744 32810936 -129788994 + L1PA15 LINE L1 5963 6152 -13 3733 238 70 21 chrX 32810936 32812200 -129787730 - L1MB2 LINE L1 -3826 2556 1130 584 280 72 88 chrX 32812422 32812822 -129787108 - L1MB2 LINE L1 -5497 806 413 312 181 352 0 chrX 32812859 32812964 -129786966 - MLT1E2 LTR MaLR -510 144 3 296 274 14 82 chrX 32812968 32813114 -129786816 - MLT1H LTR MaLR -32 517 382 697 253 49 41 chrX 32813144 32813397 -129786533 - MLT1H LTR MaLR -253 296 1 941 265 53 4 chrX 32814127 32814372 -129785558 - MIR SINE MIR 0 262 6 261 57 0 0 chrX 32814376 32814411 -129785519 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 252 52 0 chrX 32814429 32814544 -129785386 + L1ME4a LINE L1 5991 6111 -10 446 280 15 0 chrX 32814641 32814773 -129785157 - MLT1L LTR MaLR -143 472 339 538 243 22 29 chrX 32815099 32815235 -129784695 + MIR3 SINE MIR 40 174 -34 465 34 0 0 chrX 32815605 32815664 -129784266 + (TC)n Simple_repeat Simple_repeat 2 60 0 270 0 0 0 chrX 32815663 32815693 -129784237 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 2282 179 44 2 chrX 32815845 32816252 -129783678 + MSTB1 LTR MaLR 4 427 -5 488 303 96 22 chrX 32817749 32818115 -129781815 + L1ME4a LINE L1 5500 5892 -229 33 43 0 0 chrX 32818386 32818433 -129781497 + AT_rich Low_complexity Low_complexity 1 47 0 321 331 15 7 chrX 32818485 32818621 -129781309 + L1ME LINE L1 5257 5393 -769 315 305 105 0 chrX 32818658 32818822 -129781108 + L1ME LINE L1 5480 5657 -505 311 189 27 45 chrX 32818935 32819046 -129780884 - LTR16A1 LTR ERVL -82 375 267 28 0 0 0 chrX 32819359 32819387 -129780543 + AT_rich Low_complexity Low_complexity 1 28 0 256 233 33 0 chrX 32819598 32819658 -129780272 + L2 LINE L2 3208 3269 -3 568 173 0 23 chrX 32819948 32820081 -129779849 + L1MB7 LINE L1 6037 6166 -18 3784 110 46 5 chrX 32820081 32820681 -129779249 + L1MA5 LINE L1 5662 6295 -5 1954 121 43 67 chrX 32821619 32821992 -129777938 + THE1B LTR MaLR 1 364 0 1554 244 78 17 chrX 32822076 32822539 -129777391 - LTR16C LTR ERVL 0 491 1 453 248 233 48 chrX 32823049 32823259 -129776671 + MIR SINE MIR 2 250 -12 193 384 30 10 chrX 32824462 32824561 -129775369 - L2 LINE L2 -213 3059 2959 437 334 90 17 chrX 32824802 32825146 -129774784 - L1MC4a LINE L1 -1876 5932 5564 957 246 137 23 chrX 32825148 32825535 -129774395 - L2 LINE L2 -3 3310 2880 192 289 66 13 chrX 32825551 32825627 -129774303 + MIR SINE MIR 166 245 -17 652 264 91 54 chrX 32826290 32826603 -129773327 + L1ME LINE L1 5378 5711 -410 2383 140 40 26 chrX 32826603 32827031 -129772899 + Tigger2a DNA MER2_type 1 434 0 652 264 91 54 chrX 32827031 32827123 -129772807 + L1ME LINE L1 5711 5798 -323 3105 182 80 18 chrX 32828063 32828693 -129771237 + L1ME2 LINE L1 5447 6123 -41 2372 151 8 8 chrX 32828693 32829083 -129770847 - MLT1B LTR MaLR 0 390 1 3105 182 80 18 chrX 32829083 32829128 -129770802 + L1ME2 LINE L1 6123 6164 0 945 219 31 10 chrX 32829275 32829467 -129770463 - MIR SINE MIR -55 207 12 211 237 0 0 chrX 32829629 32829667 -129770263 + L2 LINE L2 3254 3291 -22 243 244 49 24 chrX 32829840 32829922 -129770008 - L1ME3A LINE L1 -146 6024 5941 994 198 14 19 chrX 32829927 32830134 -129769796 - MLT1C LTR MaLR -2 465 260 238 143 48 0 chrX 32830120 32830162 -129769768 - MLT1C LTR MaLR -423 44 1 * 236 192 0 0 chrX 32830212 32830264 -129769666 + T-rich Low_complexity Low_complexity 1 52 0 7744 23 0 0 chrX 32830265 32831301 -129768629 - L1PA3 LINE L1 -3 6152 5117 1441 259 32 28 chrX 32831301 32831773 -129768157 - L1ME3A LINE L1 -278 5892 5419 236 268 0 0 chrX 32834114 32834170 -129765760 + MLT1K LTR MaLR 23 78 -471 3934 171 83 16 chrX 32834171 32834945 -129764985 - LTR1B LTR ERV1 0 826 1 555 204 8 30 chrX 32835310 32835442 -129764488 - MIR SINE MIR -87 175 47 534 224 194 6 chrX 32835932 32836097 -129763833 + MIR SINE MIR 12 207 -55 381 252 143 15 chrX 32836100 32836314 -129763616 - MLT1L LTR MaLR -4 606 329 370 264 124 31 chrX 32837170 32837299 -129762631 + MLT1K LTR MaLR 102 242 -346 1373 206 30 99 chrX 32837459 32837862 -129762068 + MLT1B LTR MaLR 1 375 -15 3063 173 68 44 chrX 32838173 32838883 -129761047 - LTR8A LTR ERV1 0 727 1 1985 122 0 4 chrX 32839987 32840266 -129759664 + AluSx SINE Alu 1 278 -34 276 53 0 0 chrX 32840267 32840305 -129759625 + (CA)n Simple_repeat Simple_repeat 1 38 0 228 361 0 24 chrX 32841362 32841445 -129758485 - MER115 DNA AcHobo -612 81 1 1556 213 104 0 chrX 32841938 32842332 -129757598 + Charlie4a DNA MER1_type 74 508 0 475 290 153 61 chrX 32842676 32843100 -129756830 + MLT1K LTR MaLR 126 588 0 303 282 24 0 chrX 32843237 32843322 -129756608 - MIR SINE MIR -122 140 54 502 235 6 6 chrX 32843731 32843897 -129756033 + CT-rich Low_complexity Low_complexity 3 168 0 560 275 64 40 chrX 32844361 32844612 -129755318 - MIR SINE MIR 0 262 6 288 307 95 28 chrX 32844935 32845114 -129754816 + MIR3 SINE MIR 17 207 -1 447 244 165 57 chrX 32845313 32845543 -129754387 + MIR SINE MIR 8 262 0 537 326 102 18 chrX 32845714 32846057 -129753873 - LTR16A LTR ERVL -78 372 1 694 287 77 41 chrX 32847338 32847797 -129752133 - LTR16A1 LTR ERVL -5 452 3 296 299 128 27 chrX 32849269 32849430 -129750500 - MER5A DNA MER1_type -6 174 2 2100 127 9 96 chrX 32849438 32849864 -129750066 - MLT1B LTR MaLR -1 389 1 393 58 0 0 chrX 32850463 32850515 -129749415 + (TC)n Simple_repeat Simple_repeat 2 53 0 916 300 21 4 chrX 32851214 32851454 -129748476 + MIR SINE MIR 19 262 0 361 323 30 12 chrX 32851678 32851842 -129748088 - L2 LINE L2 -234 3038 2872 355 230 27 0 chrX 32853291 32853365 -129746565 + MIR SINE MIR 42 117 -91 25 65 0 0 chrX 32854325 32854371 -129745559 + AT_rich Low_complexity Low_complexity 1 46 0 1142 270 137 42 chrX 32854671 32854809 -129745121 - L1ME4a LINE L1 -27 6094 5971 186 43 0 0 chrX 32854809 32854832 -129745098 + (CA)n Simple_repeat Simple_repeat 1 23 0 1142 270 137 42 chrX 32854832 32855408 -129744522 - L1ME4a LINE L1 -150 5971 5312 2235 99 0 3 chrX 32855525 32855829 -129744101 - AluSx SINE Alu -9 303 1 182 244 24 0 chrX 32856246 32856287 -129743643 - MIR SINE MIR -142 66 25 341 205 26 26 chrX 32856607 32856685 -129743245 - L2 LINE L2 0 3272 3195 225 306 42 0 chrX 32856735 32856807 -129743123 - L2 LINE L2 -221 3051 2977 1034 211 133 31 chrX 32856917 32857211 -129742719 - MER5C DNA MER1_type 0 324 1 370 294 75 12 chrX 32857222 32857382 -129742548 - L2 LINE L2 -1315 1999 1830 470 259 19 22 chrX 32857540 32857739 -129742191 + MIR3 SINE MIR 4 202 -6 528 16 0 0 chrX 32858762 32858823 -129741107 + (CA)n Simple_repeat Simple_repeat 1 61 0 29 0 0 0 chrX 32859849 32859878 -129740052 + AT_rich Low_complexity Low_complexity 1 29 0 323 206 41 27 chrX 32859986 32860059 -129739871 - L2 LINE L2 -2 3270 3197 * 354 299 162 10 chrX 32860058 32860255 -129739675 + MIR SINE MIR 28 254 -8 302 251 205 54 chrX 32861254 32861493 -129738437 - LTR16A1 LTR ERVL -180 277 3 230 293 40 20 chrX 32861501 32861600 -129738330 - MIR SINE MIR -56 206 106 252 59 0 0 chrX 32861860 32861894 -129738036 + (TG)n Simple_repeat Simple_repeat 1 34 0 466 306 16 38 chrX 32861957 32862422 -129737508 + CT-rich Low_complexity Low_complexity 1 454 0 21 0 0 0 chrX 32862658 32862679 -129737251 + GC_rich Low_complexity Low_complexity 1 21 0 182 330 11 43 chrX 32863321 32863415 -129736515 - MIR SINE MIR -55 207 117 236 242 44 77 chrX 32863441 32863532 -129736398 + MER91B DNA MER1_type 1 88 -102 808 252 80 52 chrX 32863717 32864042 -129735888 + MLT1H LTR MaLR 216 549 0 544 239 25 43 chrX 32864243 32864406 -129735524 - MIR SINE MIR -96 166 7 610 216 112 0 chrX 32864818 32864943 -129734987 - MIR SINE MIR -116 146 8 464 269 108 24 chrX 32865526 32865693 -129734237 - MIR SINE MIR -1 261 81 326 291 8 0 chrX 32866075 32866192 -129733738 + (TG)n Simple_repeat Simple_repeat 1 118 0 198 0 0 0 chrX 32867442 32867464 -129732466 + (CTG)n Simple_repeat Simple_repeat 2 23 0 40 0 0 0 chrX 32869203 32869243 -129730687 + AT_rich Low_complexity Low_complexity 1 40 0 668 170 52 7 chrX 32869346 32869481 -129730449 + MER5A DNA MER1_type 1 141 -48 626 261 8 0 chrX 32869645 32869779 -129730151 - LTR16A LTR ERVL -5 445 311 731 279 117 44 chrX 32869793 32870202 -129729728 - L2 LINE L2 -527 2787 2349 201 175 0 0 chrX 32870328 32870368 -129729562 + GA-rich Low_complexity Low_complexity 6 45 0 911 303 24 8 chrX 32870382 32870636 -129729294 - MIR SINE MIR 0 262 5 441 315 14 7 chrX 32870729 32870872 -129729058 - MIR SINE MIR -115 147 4 1363 141 0 23 chrX 32871177 32871397 -129728533 + AluJb SINE Alu 84 298 -14 1024 230 50 0 chrX 32871543 32871765 -129728165 + MLT1E1 LTR MaLR 419 651 -3 2211 246 70 9 chrX 32871814 32872339 -129727591 + MLT1G LTR MaLR 32 588 -2 229 240 27 42 chrX 32872499 32872579 -129727351 - MIR SINE MIR -69 139 72 383 284 0 21 chrX 32873930 32874025 -129725905 - MIR SINE MIR -70 192 100 1050 256 81 77 chrX 32874172 32874703 -129725227 - MLT1H1 LTR MaLR 0 555 23 2008 177 37 8 chrX 32875878 32876257 -129723673 - MLT1B LTR MaLR 0 390 1 2090 116 7 0 chrX 32876601 32876904 -129723026 + AluSc SINE Alu 4 308 -1 584 27 14 0 chrX 32876910 32876984 -129722946 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 271 265 48 36 chrX 32877064 32877147 -129722783 + MIR SINE MIR 63 146 -62 1727 147 3 36 chrX 32877444 32877750 -129722180 - AluJb SINE Alu -6 306 11 321 26 0 0 chrX 32877831 32877869 -129722061 + (TC)n Simple_repeat Simple_repeat 1 38 0 1430 235 121 14 chrX 32877895 32878331 -129721599 + L2 LINE L2 2528 2999 -314 4283 203 48 127 chrX 32878469 32880477 -129719453 - L1MDb LINE L1 -1271 5135 3285 * 30411 53 2 0 chrX 32880462 32886592 -129713338 - L1PA5 LINE L1 0 6154 11 3143 240 28 23 chrX 32886599 32886990 -129712940 - L1MDb LINE L1 -3108 3298 2911 2134 131 0 7 chrX 32886990 32887288 -129712642 + AluSx SINE Alu 1 296 -16 3143 240 28 23 chrX 32887288 32887921 -129712009 - L1MDb LINE L1 -3495 2911 2307 1132 208 23 15 chrX 32887902 32888167 -129711763 - L1MD3 LINE L1 0 7995 7729 * 4239 227 72 23 chrX 32888173 32889679 -129710251 - L1MDb LINE L1 -4104 2302 770 619 321 12 0 chrX 32890266 32890506 -129709424 + L2 LINE L2 2104 2346 -968 1015 265 117 9 chrX 32890506 32891111 -129708819 + L2 LINE L2 2626 3313 0 244 270 0 0 chrX 32892232 32892248 -129707682 - L1MA10 LINE L1 -1 6333 6318 2574 195 102 15 chrX 32892248 32892837 -129707093 - L1ME2 LINE L1 -9 6155 5516 293 265 87 41 chrX 32893081 32893253 -129706677 + MIR SINE MIR 3 181 -58 213 222 128 86 chrX 32893520 32893637 -129706293 + MIR SINE MIR 64 185 -23 286 191 155 0 chrX 32893808 32893892 -129706038 + MIR SINE MIR 100 196 -66 1065 264 77 47 chrX 32894047 32894449 -129705481 - LTR16A LTR ERVL -10 440 27 561 226 8 0 chrX 32894454 32894587 -129705343 + MIR SINE MIR 102 235 -27 2172 181 48 7 chrX 32896211 32896626 -129703304 - MSTB1 LTR MaLR 0 432 1 440 314 96 57 chrX 32897387 32897858 -129702072 - LTR16C LTR ERVL -2 489 1 195 329 76 0 chrX 32897913 32897992 -129701938 - MIR3 SINE MIR -37 171 87 1443 195 137 89 chrX 32898361 32898667 -129701263 + MLT1F1 LTR MaLR 1 369 -198 5738 21 0 5 chrX 32898667 32899317 -129700613 + L1PA3 LINE L1 5509 6155 0 1443 195 137 89 chrX 32899317 32899527 -129700403 + MLT1F1 LTR MaLR 369 567 0 228 241 19 0 chrX 32899585 32899639 -129700291 - MLT1K LTR MaLR -25 563 509 2782 176 11 11 chrX 32899877 32900340 -129699590 + MLT2B1 LTR ERVL 1 466 -54 1049 45 45 0 chrX 32900340 32900497 -129699433 + (TTTC)n Simple_repeat Simple_repeat 4 167 0 2782 176 11 11 chrX 32900497 32900509 -129699421 + MLT2B1 LTR ERVL 465 476 -44 281 175 258 10 chrX 32900509 32900606 -129699324 + MLT2B1 LTR ERVL 400 520 0 297 287 92 37 chrX 32900925 32901089 -129698841 + MIR3 SINE MIR 30 202 -6 207 356 0 26 chrX 32902304 32902419 -129697511 + GA-rich Low_complexity Low_complexity 1 112 0 207 0 0 0 chrX 32902520 32902543 -129697387 + (CAA)n Simple_repeat Simple_repeat 2 24 0 293 110 0 55 chrX 32903152 32903225 -129696705 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 273 325 0 0 chrX 32903309 32903392 -129696538 - L2 LINE L2 -4 3268 3186 350 227 67 50 chrX 32904155 32904274 -129695656 + MLT1J LTR MaLR 1 121 -390 293 300 0 10 chrX 32904628 32904728 -129695202 - LTR33A LTR ERVL -2 521 423 825 266 196 6 chrX 32904767 32905124 -129694806 + LTR16A LTR ERVL 26 450 0 288 286 84 80 chrX 32905324 32905537 -129694393 - LTR33A LTR ERVL -307 216 3 1070 179 0 36 chrX 32905611 32905806 -129694124 + MLT1E LTR MaLR 406 593 0 526 257 14 7 chrX 32906053 32906197 -129693733 - MER5B DNA MER1_type 0 178 34 793 163 31 31 chrX 32906206 32906366 -129693564 - MER96B DNA MER1_type? -8 409 250 720 249 6 40 chrX 32906698 32906871 -129693059 - MER63A DNA MER1_type 0 210 44 275 266 73 33 chrX 32907335 32907486 -129692444 + MIR SINE MIR 52 207 -55 2386 184 55 63 chrX 32908232 32908819 -129691111 + MLT1G LTR MaLR 9 590 0 292 400 0 0 chrX 32909068 32909178 -129690752 - L2 LINE L2 0 3313 3204 1988 206 61 26 chrX 32909192 32909683 -129690247 - Charlie4a DNA MER1_type 0 508 1 1638 196 109 34 chrX 32909741 32910210 -129689720 - MLT1D LTR MaLR 0 505 2 265 317 73 61 chrX 32910250 32910753 -129689177 - L2 LINE L2 -218 3054 2553 591 283 111 31 chrX 32911650 32911852 -129688078 - LTR16C LTR ERVL 0 491 268 2847 115 31 2 chrX 32911852 32912268 -129687662 - MSTA LTR MaLR 0 428 1 591 283 111 31 chrX 32912268 32912291 -129687639 - LTR16C LTR ERVL -223 268 248 * 2438 88 9 12 chrX 32912289 32912619 -129687311 + THE1C LTR MaLR 47 375 0 509 258 120 47 chrX 32912619 32912852 -129687078 - LTR16C LTR ERVL -241 250 1 191 377 33 25 chrX 32914871 32914993 -129684937 + L2 LINE L2 3150 3272 0 436 295 31 8 chrX 32915923 32916052 -129683878 + L2 LINE L2 3141 3272 0 361 289 75 40 chrX 32916429 32916575 -129683355 + LTR33 LTR ERVL 76 215 -306 2265 156 50 79 chrX 32916575 32916766 -129683164 + MLT1D LTR MaLR 1 196 -309 2083 139 0 0 chrX 32916766 32917068 -129682862 + AluSx SINE Alu 1 302 -10 2265 156 50 79 chrX 32917068 32917396 -129682534 + MLT1D LTR MaLR 196 505 0 361 289 75 40 chrX 32917396 32917628 -129682302 + LTR33 LTR ERVL 215 506 -15 613 306 69 51 chrX 32918162 32918554 -129681376 + LTR16C LTR ERVL 93 491 0 1155 188 103 19 chrX 32919082 32919425 -129680505 - MLT1E LTR MaLR -2 591 231 332 119 254 0 chrX 32919422 32919489 -129680441 - MLT1E LTR MaLR -570 84 1 * 1377 179 66 127 chrX 32920043 32920540 -129679390 - MLT1C LTR MaLR 0 467 1 259 292 62 103 chrX 32920843 32921134 -129678796 + L2 LINE L2 2990 3268 -4 577 294 42 49 chrX 32921608 32921876 -129678054 - MLT1H1 LTR MaLR -300 267 1 192 282 97 0 chrX 32921980 32922083 -129677847 + MIR SINE MIR 73 185 -77 667 249 37 32 chrX 32922842 32923031 -129676899 + MIR SINE MIR 73 262 0 870 202 46 63 chrX 32923266 32923398 -129676532 - MIR SINE MIR -1 261 133 1809 191 24 22 chrX 32923398 32923769 -129676161 - MLT1A2 LTR MaLR 0 374 3 870 202 46 63 chrX 32923769 32923874 -129676056 - MIR SINE MIR -129 133 28 1023 228 107 91 chrX 32923941 32924422 -129675508 - MLT1H LTR MaLR -1 548 36 238 185 56 0 chrX 32924497 32924551 -129675379 - MLT1K LTR MaLR -10 578 522 1649 177 16 26 chrX 32924558 32924863 -129675067 + AluJo SINE Alu 1 302 -10 573 279 172 17 chrX 32924983 32925216 -129674714 - MLT1K LTR MaLR -201 387 119 840 202 109 11 chrX 32925223 32925406 -129674524 + MER63A DNA MER1_type 9 209 -1 21 36 0 0 chrX 32925578 32925606 -129674324 + AT_rich Low_complexity Low_complexity 1 28 0 766 278 57 4 chrX 32925784 32926032 -129673898 - MIR SINE MIR 0 262 2 257 129 0 48 chrX 32927290 32927352 -129672578 + (T)n Simple_repeat Simple_repeat 1 59 0 261 180 0 0 chrX 32927673 32927723 -129672207 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 53 0 0 chrX 32928297 32928335 -129671595 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chrX 32928365 32928386 -129671544 + (TG)n Simple_repeat Simple_repeat 1 21 0 221 30 61 0 chrX 32928423 32928456 -129671474 + GA-rich Low_complexity Low_complexity 4 38 0 257 293 37 0 chrX 32929130 32929212 -129670718 - MIR SINE MIR -17 245 161 365 195 39 0 chrX 32929213 32929290 -129670640 - MER116 DNA Mariner 0 80 1 355 238 81 2 chrX 32929290 32929424 -129670506 - MIR SINE MIR -58 150 11 280 345 18 0 chrX 32929443 32929553 -129670377 - MIR SINE MIR -101 161 50 1495 280 67 11 chrX 32929876 32930341 -129669589 - LTR16C LTR ERVL 0 491 1 474 222 196 13 chrX 32931212 32931365 -129668565 + MER5A DNA MER1_type 9 189 0 623 267 10 90 chrX 32931830 32932118 -129667812 + MLT1H LTR MaLR 47 311 -238 284 271 33 25 chrX 32932287 32932409 -129667521 + MIR SINE MIR 111 233 -29 22 0 0 0 chrX 32932418 32932440 -129667490 + AT_rich Low_complexity Low_complexity 1 22 0 1066 259 128 34 chrX 32934948 32935053 -129664877 - MLT1H LTR MaLR 0 549 455 186 71 0 0 chrX 32935053 32935081 -129664849 + (GCTTG)n Simple_repeat Simple_repeat 1 28 0 1066 259 128 34 chrX 32935081 32935477 -129664453 - MLT1H LTR MaLR -94 455 1 249 139 0 0 chrX 32936888 32936931 -129662999 + (TG)n Simple_repeat Simple_repeat 2 44 0 834 269 10 0 chrX 32937467 32937668 -129662262 + MIR SINE MIR 12 214 -48 190 355 140 0 chrX 32937964 32938057 -129661873 - L2 LINE L2 -10 3303 3198 767 215 24 43 chrX 32938167 32938376 -129661554 - L1ME3A LINE L1 -1 6169 5965 1978 237 73 36 chrX 32939000 32939562 -129660368 - MLT1G LTR MaLR 0 590 8 865 254 12 4 chrX 32939571 32939811 -129660119 + MIR SINE MIR 10 251 -11 323 318 108 6 chrX 32940005 32940181 -129659749 - MIR SINE MIR -50 212 19 33 25 0 0 chrX 32940223 32940263 -129659667 + AT_rich Low_complexity Low_complexity 1 40 0 446 334 7 14 chrX 32940893 32941071 -129658859 + MIR3 SINE MIR 20 197 -11 190 348 0 52 chrX 32943341 32943456 -129656474 - MIR SINE MIR -57 151 43 375 327 80 15 chrX 32944193 32944392 -129655538 - L2 LINE L2 0 3272 3061 216 328 56 56 chrX 32944975 32945100 -129654830 + MER5A DNA MER1_type 26 150 -39 1220 224 0 0 chrX 32945314 32945537 -129654393 - MER58A DNA MER1_type 0 224 2 1077 202 5 5 chrX 32945657 32945845 -129654085 - MER5A DNA MER1_type -1 188 1 258 309 99 0 chrX 32946285 32946366 -129653564 + L2 LINE L2 3134 3222 -50 4038 149 66 13 chrX 32946512 32947228 -129652702 + L1MB7 LINE L1 5431 6184 0 817 52 17 0 chrX 32947362 32947477 -129652453 + (TA)n Simple_repeat Simple_repeat 1 117 0 2433 230 63 59 chrX 32949258 32950120 -129649810 - L1ME LINE L1 -5177 893 29 188 241 103 0 chrX 32950537 32950595 -129649335 - MIR SINE MIR -70 192 129 198 150 0 0 chrX 32950703 32950743 -129649187 + (TAA)n Simple_repeat Simple_repeat 2 41 0 276 206 31 194 chrX 32951539 32951637 -129648293 + MIR3 SINE MIR 61 125 -83 761 148 9 0 chrX 32951637 32951752 -129648178 + FLAM_A SINE Alu 1 116 -17 276 206 31 194 chrX 32951752 32951813 -129648117 + MIR3 SINE MIR 125 194 -14 204 179 0 0 chrX 32952638 32952677 -129647253 + GA-rich Low_complexity Low_complexity 2 40 0 314 258 180 16 chrX 32952838 32952964 -129646966 - LTR16C LTR ERVL -73 418 272 1254 216 133 38 chrX 32952964 32953386 -129646544 - MLT1C LTR MaLR 0 467 6 960 270 106 32 chrX 32954750 32955154 -129644776 - MLT1J1 LTR MaLR -11 435 2 825 265 121 30 chrX 32955233 32955454 -129644476 - MLT1H1 LTR MaLR -96 499 300 1469 172 45 26 chrX 32955454 32955562 -129644368 + AluJo SINE Alu 16 120 -192 273 57 0 0 chrX 32955562 32955597 -129644333 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1469 172 45 26 chrX 32955597 32955756 -129644174 + AluJo SINE Alu 120 288 -24 825 265 121 30 chrX 32955756 32955926 -129644004 - MLT1H1 LTR MaLR -295 300 60 2069 177 25 0 chrX 32955926 32956282 -129643648 - MLT1A1 LTR MaLR 0 365 1 825 265 121 30 chrX 32956282 32956314 -129643616 - MLT1H1 LTR MaLR -535 60 32 266 340 60 0 chrX 32956654 32956754 -129643176 + L2 LINE L2 3158 3263 -9 181 316 22 84 chrX 32956951 32957226 -129642704 + L2 LINE L2 73 330 -2984 342 268 108 77 chrX 32957615 32957809 -129642121 + L2 LINE L2 327 526 -2788 2092 188 23 21 chrX 32957860 32958248 -129641682 + MSTB LTR MaLR 38 426 0 1320 278 86 7 chrX 32958266 32958694 -129641236 - LTR16B LTR ERVL -2 462 1 2782 263 104 18 chrX 32958696 32959877 -129640053 + L2 LINE L2 570 1852 -1462 180 0 0 0 chrX 32960231 32960251 -129639679 + (A)n Simple_repeat Simple_repeat 1 20 0 240 351 0 22 chrX 32960888 32961049 -129638881 - MIR SINE MIR -72 190 37 216 0 0 0 chrX 32961866 32961890 -129638040 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chrX 32962396 32962417 -129637513 + AT_rich Low_complexity Low_complexity 1 21 0 864 328 40 9 chrX 32962659 32962985 -129636945 - LTR16C LTR ERVL 0 491 156 5736 123 72 2 chrX 32963203 32964688 -129635242 + L1PBa LINE L1 2056 3649 -3213 617 251 80 12 chrX 32964879 32965042 -129634888 + MER96 DNA MER1_type 2 175 0 368 291 84 63 chrX 32966285 32966498 -129633432 - L2 LINE L2 -471 2843 2623 2357 62 13 13 chrX 32966498 32966805 -129633125 + AluY SINE Alu 1 307 -4 368 291 84 63 chrX 32966805 32966828 -129633102 - L2 LINE L2 -691 2623 2602 182 256 58 35 chrX 32966965 32967051 -129632879 - L2 LINE L2 -919 2395 2308 455 250 0 0 chrX 32967054 32967142 -129632788 - MER81 DNA DNA -21 93 6 219 365 48 24 chrX 32968181 32968307 -129631623 + L2 LINE L2 3144 3272 0 7265 21 1 369 chrX 32968644 32970787 -129629143 + SVA Other Other 47 1409 0 13665 89 5 22 chrX 32970908 32972868 -129627062 - L1P3 LINE L1 -4498 1963 3 6106 111 13 9 chrX 32972869 32974707 -129625223 + L1PA15 LINE L1 4315 6161 -4 470 304 41 23 chrX 32974734 32975000 -129624930 - L1MC4 LINE L1 -223 7819 7549 385 293 60 0 chrX 32974971 32975087 -129624843 - L1MC4a LINE L1 -401 7407 7285 * 1285 275 118 51 chrX 32975094 32975884 -129624046 - L1MEd LINE L1 -4762 1548 615 207 0 0 0 chrX 32975884 32975907 -129624023 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1285 275 118 51 chrX 32975907 32976323 -129623607 - L1MEd LINE L1 -5695 615 228 307 327 32 32 chrX 32976502 32976658 -129623272 + L2 LINE L2 3117 3272 0 204 339 18 9 chrX 32977903 32978012 -129621918 + L2 LINE L2 3127 3236 -36 710 222 93 10 chrX 32978016 32978210 -129621720 + MIR SINE MIR 45 254 -8 267 152 0 0 chrX 32978527 32978573 -129621357 + (CA)n Simple_repeat Simple_repeat 1 46 0 598 337 73 25 chrX 32978884 32979240 -129620690 - LTR16C LTR ERVL 0 491 119 532 264 0 16 chrX 32980807 32980936 -129618994 + MIR SINE MIR 14 140 -122 789 267 43 18 chrX 32980942 32981288 -129618642 - LTR16A LTR ERVL 0 450 66 187 243 131 65 chrX 32981385 32981492 -129618438 + MIR SINE MIR 149 262 0 1568 164 16 32 chrX 32981764 32982075 -129617855 - MLT1B LTR MaLR 0 390 85 500 251 44 22 chrX 32982199 32982382 -129617548 - LTR16A1 LTR ERVL -89 368 182 1421 213 117 66 chrX 32983338 32983836 -129616094 - LTR33A LTR ERVL 0 523 1 1398 212 19 35 chrX 32983906 32984222 -129615708 + MLT1A1 LTR MaLR 55 365 0 558 249 174 9 chrX 32985090 32985303 -129614627 - MIR SINE MIR -3 259 12 510 250 153 51 chrX 32986093 32986309 -129613621 + MLT1L LTR MaLR 6 243 -372 381 315 102 36 chrX 32986497 32986881 -129613049 + L2 LINE L2 2349 2757 -557 275 236 47 28 chrX 32987418 32987524 -129612406 - L1MC5 LINE L1 -48 7913 7806 629 270 91 25 chrX 32987549 32987953 -129611977 + LTR33 LTR ERVL 2 482 -39 5873 222 19 16 chrX 32988015 32989716 -129610214 + L1PA15-16 LINE L1 1901 3607 -3242 1296 165 0 5 chrX 32989719 32989943 -129609987 + L1PA15-16 LINE L1 4812 5034 -1815 25022 87 19 9 chrX 32989957 32994285 -129605645 - L1PA7 LINE L1 -2 6152 1784 4336 155 119 39 chrX 32994285 32995263 -129604667 + pTR5 LTR ERV1 741 2021 -417 389 238 10 0 chrX 32995264 32995365 -129604565 + LTR30 LTR ERV1 541 642 -80 2453 86 0 0 chrX 32995365 32995692 -129604238 + pTR5 LTR ERV1 66 392 -2046 2144 36 0 25 chrX 32995707 32995983 -129603947 + SVA Other Other 1 269 -1117 603 192 154 0 chrX 32996468 32996624 -129603306 - MER5A DNA MER1_type -6 183 4 244 280 38 19 chrX 32997950 32998107 -129601823 + (TCCA)n Simple_repeat Simple_repeat 1 160 0 408 285 24 24 chrX 32998137 32998302 -129601628 + (TCCA)n Simple_repeat Simple_repeat 3 167 0 227 380 108 24 chrX 32998638 32998925 -129601005 - L2 LINE L2 -449 2865 2555 1286 196 30 23 chrX 32999328 32999647 -129600283 - L1MD3 LINE L1 -10 7985 7609 1229 210 122 30 chrX 32999758 33000271 -129599659 - MLT1G LTR MaLR 0 590 7 658 260 70 29 chrX 33000543 33000785 -129599145 + MIR SINE MIR 6 257 -5 1615 183 97 30 chrX 33001596 33001967 -129597963 - MSTD LTR MaLR 0 396 1 201 129 0 0 chrX 33001993 33002024 -129597906 + (CA)n Simple_repeat Simple_repeat 2 32 0 522 264 68 36 chrX 33002561 33002811 -129597119 - MIR SINE MIR 0 262 5 826 305 123 32 chrX 33002811 33003503 -129596427 - L1ME4a LINE L1 -46 6075 5321 424 322 145 8 chrX 33004189 33004568 -129595362 + L2 LINE L2 1930 2360 -954 202 235 20 0 chrX 33005653 33005704 -129594226 - L2 LINE L2 -19 3294 3243 981 293 51 39 chrX 33005704 33006138 -129593792 - LTR16C LTR ERVL 0 491 53 271 148 93 0 chrX 33006806 33006860 -129593070 - LTR33 LTR ERVL -5 516 458 * 911 244 34 38 chrX 33006841 33007132 -129592798 - LTR33 LTR ERVL -182 339 50 2422 147 36 19 chrX 33007132 33007553 -129592377 + MSTA LTR MaLR 1 428 0 2194 127 0 0 chrX 33007598 33007921 -129592009 + MSTA-int LTR MaLR 31 353 -1298 2206 152 6 15 chrX 33007921 33008256 -129591674 + MER1B DNA MER1_type 1 332 -7 7001 182 45 6 chrX 33008256 33009492 -129590438 + MSTA-int LTR MaLR 353 1637 -14 2689 137 31 5 chrX 33009506 33009923 -129590007 + MSTA LTR MaLR 1 428 0 1809 189 122 12 chrX 33010567 33010984 -129588946 - MLT1C LTR MaLR -2 465 3 830 266 92 17 chrX 33011293 33011586 -129588344 - LTR16C LTR ERVL 0 491 177 300 311 59 7 chrX 33011714 33011849 -129588081 - MIR SINE MIR -72 190 49 893 257 55 55 chrX 33012849 33013234 -129586696 - L2 LINE L2 0 3313 2929 301 301 15 45 chrX 33013579 33013712 -129586218 + MIR SINE MIR 28 156 -106 1320 267 88 32 chrX 33013932 33014397 -129585533 - LTR16C LTR ERVL 0 491 1 183 42 0 0 chrX 33015809 33015833 -129584097 + (ATG)n Simple_repeat Simple_repeat 1 24 0 203 222 0 22 chrX 33016903 33016948 -129582982 + MER91 DNA MER1_type 95 138 -2 181 228 70 35 chrX 33017645 33017675 -129582255 + L2 LINE L2 3255 3282 -31 777 129 30 23 chrX 33017675 33017807 -129582123 - FLAM_C SINE Alu 0 133 1 181 228 70 35 chrX 33017807 33017833 -129582097 + L2 LINE L2 3282 3313 0 1095 267 77 18 chrX 33018458 33018859 -129581071 + L1ME3A LINE L1 5657 6081 -89 301 202 24 32 chrX 33019849 33020076 -129579854 + GA-rich Low_complexity Low_complexity 1 225 0 272 244 67 111 chrX 33020681 33020816 -129579114 - MLT1J1 LTR MaLR -57 389 261 254 302 21 21 chrX 33020818 33020914 -129579016 - MER5B DNA MER1_type -78 100 5 1984 170 41 0 chrX 33021033 33021374 -129578556 + MER47A DNA MER2_type 12 366 0 804 249 6 0 chrX 33021374 33021542 -129578388 - MLT1J2 LTR MaLR -274 176 8 2922 52 14 0 chrX 33021944 33022306 -129577624 + L1PA6 LINE L1 5784 6150 -4 297 237 51 34 chrX 33022451 33022569 -129577361 + MER94 DNA DNA 15 134 0 647 247 239 19 chrX 33023700 33023854 -129576076 + MLT1H LTR MaLR 95 214 -335 1460 169 141 44 chrX 33023854 33024215 -129575715 - MSTD LTR MaLR 0 396 1 647 247 239 19 chrX 33024215 33024433 -129575497 + MLT1H LTR MaLR 214 549 0 276 347 10 0 chrX 33024433 33024531 -129575399 - MIR SINE MIR -80 128 30 318 278 30 53 chrX 33025455 33025588 -129574342 + L2 LINE L2 3143 3272 0 843 254 130 56 chrX 33026219 33026597 -129573333 - LTR16C LTR ERVL -6 485 80 814 271 21 106 chrX 33027271 33027743 -129572187 - MLT1J1 LTR MaLR 0 446 15 249 267 213 40 chrX 33028122 33028272 -129571658 + MLT1H LTR MaLR 69 244 -311 414 193 144 20 chrX 33028355 33028518 -129571412 + MLT1H LTR MaLR 368 544 -5 194 342 77 43 chrX 33028739 33028856 -129571074 + L2 LINE L2 3152 3272 0 4821 127 14 9 chrX 33029078 33029859 -129570071 + L1MA6 LINE L1 5512 6296 -4 540 317 92 8 chrX 33030663 33030903 -129569027 + MIR SINE MIR 1 260 -2 37 62 0 0 chrX 33031007 33031072 -129568858 + AT_rich Low_complexity Low_complexity 1 65 0 832 262 35 4 chrX 33031120 33031349 -129568581 - MIR SINE MIR -15 247 12 1077 273 51 96 chrX 33032207 33032833 -129567097 - MLT1L LTR MaLR 0 615 18 207 273 182 0 chrX 33032847 33032935 -129566995 - MIR SINE MIR -118 144 41 244 98 0 39 chrX 33033798 33033849 -129566081 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 474 260 66 51 chrX 33033911 33034107 -129565823 + MLT1J LTR MaLR 3 201 -310 369 276 0 0 chrX 33034151 33034238 -129565692 + LTR16A LTR ERVL 364 450 0 252 319 78 42 chrX 33034331 33034497 -129565433 + MLT1L LTR MaLR 371 542 -73 574 257 36 61 chrX 33034624 33034904 -129565026 - L2 LINE L2 -10 3303 3031 893 280 68 34 chrX 33035156 33035538 -129564392 - L2 LINE L2 -621 2693 2299 1770 237 84 9 chrX 33035545 33035975 -129563955 + LTR16B LTR ERVL 1 462 -2 503 250 127 48 chrX 33036001 33036220 -129563710 - L2 LINE L2 -1050 2264 2009 1589 175 7 34 chrX 33036220 33036517 -129563413 + AluJo SINE Alu 1 289 -23 503 250 127 48 chrX 33036517 33036629 -129563301 - L2 LINE L2 -1305 2009 1907 261 355 73 8 chrX 33036641 33036900 -129563030 - L2 LINE L2 -1838 1476 1201 1764 194 93 11 chrX 33037375 33037740 -129562190 + MLT2D LTR ERVL 1 395 -19 285 139 0 0 chrX 33037779 33037822 -129562108 + MLT2D LTR ERVL 348 390 -7 1985 141 82 70 chrX 33037848 33038275 -129561655 - MSTB1 LTR MaLR 0 432 1 432 208 0 0 chrX 33038380 33038481 -129561449 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 242 320 221 0 chrX 33038502 33038624 -129561306 + MIR SINE MIR 6 154 -108 275 238 38 25 chrX 33038696 33038776 -129561154 + L3 LINE CR1 968 1048 -529 283 173 40 53 chrX 33039105 33039180 -129560750 - MLT1K LTR MaLR -158 430 357 23 33 0 0 chrX 33040355 33040385 -129559545 + AT_rich Low_complexity Low_complexity 1 30 0 1065 275 152 24 chrX 33040897 33041438 -129558492 - MLT1L LTR MaLR -5 610 1 209 351 46 23 chrX 33042301 33042432 -129557498 + L2 LINE L2 3137 3270 -2 602 155 9 0 chrX 33042939 33043055 -129556875 + CT-rich Low_complexity Low_complexity 2 118 0 1066 224 8 13 chrX 33043666 33043903 -129556027 - MIR SINE MIR -25 237 2 3873 141 6 6 chrX 33044051 33044681 -129555249 - L1MA5 LINE L1 -2 6298 5669 633 76 0 0 chrX 33044681 33044760 -129555170 + L1M2 LINE L1 5659 5737 -563 1148 255 23 7 chrX 33044782 33045084 -129554846 + LTR16C LTR ERVL 185 491 0 350 315 26 9 chrX 33045110 33045274 -129554656 - MIR SINE MIR -51 157 33 309 181 32 0 chrX 33045503 33045597 -129554333 + (TA)n Simple_repeat Simple_repeat 1 97 0 205 156 0 0 chrX 33045616 33045648 -129554282 + (TG)n Simple_repeat Simple_repeat 2 33 0 435 253 58 49 chrX 33045740 33045969 -129553961 + MLT1H LTR MaLR 44 304 -245 276 200 110 50 chrX 33045998 33046098 -129553832 + MLT1I LTR MaLR 281 386 -23 23 0 0 0 chrX 33046168 33046191 -129553739 + AT_rich Low_complexity Low_complexity 1 23 0 454 252 84 0 chrX 33046339 33046458 -129553472 - MER94 DNA DNA 0 134 6 234 375 130 3 chrX 33046739 33047040 -129552890 - L2 LINE L2 -511 2803 2465 757 280 44 30 chrX 33047285 33047613 -129552317 + LTR16C LTR ERVL 90 491 0 962 215 13 35 chrX 33047613 33047841 -129552089 + MIR SINE MIR 14 236 -26 553 252 92 11 chrX 33047989 33048234 -129551696 - LTR33A LTR ERVL -14 509 327 399 289 70 40 chrX 33048258 33048459 -129551471 - LTR50 LTR ERVL -569 226 20 417 306 96 0 chrX 33049220 33049377 -129550553 - MIR SINE MIR -71 191 20 11969 180 85 8 chrX 33049821 33053777 -129546153 + L1PBa LINE L1 6 4265 -2597 1208 243 47 137 chrX 33103780 33104668 -129495262 - L1PBb LINE L1 -4967 1236 371 6970 100 8 31 chrX 33105068 33106151 -129493779 + L1P LINE L1 864 1921 -4225 1625 345 26 17 chrX 33106252 33107015 -129492915 - HERV16 LTR ERVL -3429 1567 798 866 161 7 7 chrX 33107025 33107180 -129492750 - LTR32 LTR ERVL 0 471 317 535 210 0 0 chrX 33107232 33107332 -129492598 - LTR32 LTR ERVL -119 352 253 32 0 0 0 chrX 33108223 33108255 -129491675 + AT_rich Low_complexity Low_complexity 1 32 0 2433 61 0 19 chrX 33108281 33108591 -129491339 - AluY SINE Alu -7 304 1 299 330 44 16 chrX 33109371 33109553 -129490377 + MIR SINE MIR 32 218 -44 248 306 12 0 chrX 33110049 33110134 -129489796 - MER94 DNA DNA -10 124 39 291 28 0 0 chrX 33110477 33110513 -129489417 + (CA)n Simple_repeat Simple_repeat 2 37 0 382 228 40 79 chrX 33110835 33111037 -129488893 + MIR SINE MIR 66 259 -3 244 186 68 17 chrX 33111115 33111174 -129488756 + MIR SINE MIR 72 133 -75 * 512 186 0 93 chrX 33111168 33111297 -129488633 - L2 LINE L2 0 3313 3197 256 272 222 0 chrX 33112152 33112233 -129487697 - L2 LINE L2 -22 3250 3152 2099 153 6 8 chrX 33112807 33113172 -129486758 - L1MA3 LINE L1 0 6305 5942 255 182 0 0 chrX 33113352 33113396 -129486534 + LTR16C LTR ERVL 448 491 0 541 264 104 2 chrX 33114615 33114796 -129485134 + MIR SINE MIR 3 197 -65 195 279 29 0 chrX 33114907 33114975 -129484955 - L2 LINE L2 -208 3064 2995 2278 196 72 52 chrX 33115011 33115597 -129484333 + MLT1G LTR MaLR 13 576 -19 2820 71 3 0 chrX 33115915 33116269 -129483661 + THE1A LTR MaLR 1 355 0 6377 116 60 1 chrX 33116269 33117182 -129482748 + THE1A-int LTR MaLR 1 967 -613 350 232 49 63 chrX 33118123 33118265 -129481665 - MIR3 SINE MIR -34 174 35 2083 177 14 3 chrX 33118911 33119272 -129480658 + MLT1A1 LTR MaLR 1 365 0 250 259 62 37 chrX 33119280 33119361 -129480569 - MIR SINE MIR -167 95 13 258 371 57 28 chrX 33119506 33119754 -129480176 - L2 LINE L2 -337 2977 2723 1293 83 10 21 chrX 33119773 33119965 -129479965 + L1PA14 LINE L1 5963 6152 -9 21 0 0 0 chrX 33119977 33119998 -129479932 + AT_rich Low_complexity Low_complexity 1 21 0 323 232 27 54 chrX 33120099 33120148 -129479782 + L2 LINE L2 3172 3221 -92 2542 118 83 5 chrX 33120148 33120545 -129479385 + MSTA LTR MaLR 1 428 0 323 232 27 54 chrX 33120545 33120607 -129479323 + L2 LINE L2 3221 3280 -33 4593 97 6 13 chrX 33120817 33121448 -129478482 + THE1A-int LTR MaLR 954 1580 0 2623 104 3 3 chrX 33121448 33121803 -129478127 + THE1A LTR MaLR 1 355 0 358 257 46 9 chrX 33121896 33122005 -129477925 + MIR SINE MIR 35 147 -115 2199 126 39 39 chrX 33122415 33122779 -129477151 + THE1B LTR MaLR 1 364 0 406 257 52 22 chrX 33122843 33122979 -129476951 + MER5A DNA MER1_type 1 140 -49 242 235 0 0 chrX 33123107 33123158 -129476772 - LTR33 LTR ERVL 0 521 471 332 140 149 56 chrX 33123817 33123924 -129476006 + L2 LINE L2 3196 3312 -1 2031 112 0 18 chrX 33125964 33126250 -129473680 - AluSx SINE Alu -17 295 15 233 188 0 87 chrX 33126255 33126324 -129473606 - MER5A DNA MER1_type -118 71 9 860 198 0 22 chrX 33126366 33126548 -129473382 + MER5B DNA MER1_type 1 178 0 320 266 184 6 chrX 33126914 33127072 -129472858 - Charlie8 DNA MER1_type -1926 491 306 553 160 9 178 chrX 33127074 33127287 -129472643 - MER69A DNA AcHobo 0 177 1 426 241 0 27 chrX 33127498 33127610 -129472320 + MER5A DNA MER1_type 4 112 -77 223 250 0 0 chrX 33127708 33127760 -129472170 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 217 315 0 22 chrX 33128231 33128320 -129471610 + MIR SINE MIR 16 102 -160 302 308 9 0 chrX 33129378 33129485 -129470445 - MIR3 SINE MIR -32 176 69 231 146 42 42 chrX 33129786 33129834 -129470096 + MER34 LTR ERV1 1 48 -494 617 299 58 18 chrX 33130751 33131025 -129468905 + L3 LINE CR1 1281 1565 -12 323 162 162 27 chrX 33131838 33131912 -129468018 + MLT1C LTR MaLR 6 89 -378 1862 233 32 21 chrX 33131923 33132360 -129467570 - MER70B LTR ERVL -133 445 4 1684 194 65 19 chrX 33132365 33132732 -129467198 + MLT1C LTR MaLR 84 467 0 724 242 138 76 chrX 33133108 33133579 -129466351 + Charlie8 DNA MER1_type 43 542 -1875 464 252 42 125 chrX 33135446 33135797 -129464133 + MLT1I LTR MaLR 98 386 -23 1093 177 0 16 chrX 33135931 33136123 -129463807 + MER5A DNA MER1_type 1 189 0 909 187 12 6 chrX 33136309 33136480 -129463450 + MER5B DNA MER1_type 1 172 -6 255 262 0 0 chrX 33136714 33136775 -129463155 - L2 LINE L2 -2 3270 3210 380 264 39 60 chrX 33136916 33137098 -129462832 - MLT1K LTR MaLR -28 560 383 2059 145 112 25 chrX 33137385 33137777 -129462153 - MSTA LTR MaLR 0 428 3 293 231 26 0 chrX 33138406 33138484 -129461446 + L1ME4a LINE L1 5962 6041 -80 1530 273 54 30 chrX 33138485 33139248 -129460682 - L2 LINE L2 -2 3311 2531 2355 93 86 67 chrX 33139355 33139729 -129460201 + MSTA LTR MaLR 1 366 -62 191 61 30 0 chrX 33139729 33139762 -129460168 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2021 112 4 4 chrX 33139765 33140042 -129459888 - AluSc SINE Alu -32 277 1 2355 93 86 67 chrX 33140042 33140083 -129459847 + MSTA LTR MaLR 367 428 0 955 229 0 14 chrX 33140622 33140832 -129459098 - MER3 DNA MER1_type -2 207 1 202 325 150 45 chrX 33140962 33141208 -129458722 + L2 LINE L2 2993 3264 -8 286 294 25 21 chrX 33141394 33141507 -129458423 + MIR SINE MIR 45 156 -58 259 356 0 0 chrX 33143886 33143973 -129455957 - L2 LINE L2 -13 3259 3173 1484 237 20 12 chrX 33143994 33144340 -129455590 + MLT1J LTR MaLR 1 349 -162 2233 188 114 2 chrX 33144346 33144883 -129455047 + L1ME2 LINE L1 5553 6149 -15 282 258 106 23 chrX 33144916 33145048 -129454882 + MLT1J LTR MaLR 353 495 -16 1021 254 21 4 chrX 33146107 33146343 -129453587 - MIR SINE MIR -5 257 18 2050 132 39 0 chrX 33146430 33146710 -129453220 - AluSx SINE Alu -21 291 1 250 287 57 57 chrX 33148070 33148192 -129451738 - MIR SINE MIR -49 213 92 379 336 229 9 chrX 33148683 33149469 -129450461 - L2 LINE L2 -562 2752 1794 986 192 6 28 chrX 33149483 33149665 -129450265 + MER5A DNA MER1_type 12 189 0 1531 246 121 31 chrX 33150139 33150683 -129449247 - MLT1G1 LTR MaLR -2 593 1 218 133 0 22 chrX 33151466 33151511 -129448419 + (TTCTCC)n Simple_repeat Simple_repeat 2 45 0 196 333 90 0 chrX 33152220 33152331 -129447599 + L2 LINE L2 3142 3262 -10 3100 173 23 5 chrX 33152334 33152906 -129447024 + L1MB5 LINE L1 5591 6172 -2 255 237 204 0 chrX 33152974 33153067 -129446863 - MER81 DNA DNA -1 113 2 185 186 116 0 chrX 33153187 33153230 -129446700 - MIR SINE MIR 0 262 215 343 236 112 0 chrX 33153292 33153381 -129446549 - MER5A DNA MER1_type -87 102 4 * 858 210 16 27 chrX 33153381 33153565 -129446365 - MIR SINE MIR -43 219 38 236 189 75 0 chrX 33154103 33154156 -129445774 + MIR SINE MIR 108 164 -98 1825 174 0 29 chrX 33155606 33155916 -129444014 - AluJo SINE Alu -7 305 5 285 75 0 0 chrX 33155980 33156020 -129443910 + (CA)n Simple_repeat Simple_repeat 1 40 0 858 249 48 12 chrX 33156743 33156992 -129442938 + MIR SINE MIR 4 261 -1 618 297 25 127 chrX 33157095 33157553 -129442377 + L3 LINE CR1 159 545 -1032 846 252 133 42 chrX 33157553 33157958 -129441972 - MLT1J1 LTR MaLR 0 446 5 618 297 25 127 chrX 33157958 33158091 -129441839 + L3 LINE CR1 545 690 -887 367 302 12 41 chrX 33158552 33158724 -129441206 + L3 LINE CR1 674 840 -737 665 253 22 0 chrX 33158755 33158937 -129440993 - LTR33 LTR ERVL -4 517 332 257 315 15 46 chrX 33159108 33159238 -129440692 + L3 LINE CR1 1143 1268 -309 323 310 133 19 chrX 33159344 33159502 -129440428 + L2 LINE L2 3096 3271 -1 205 259 17 17 chrX 33159609 33159667 -129440263 + MIR SINE MIR 79 136 -126 275 282 168 0 chrX 33159792 33159941 -129439989 - LTR16C LTR ERVL 0 491 318 1579 122 79 33 chrX 33160780 33161147 -129438783 + MSTB LTR MaLR 1 425 -1 1970 195 21 21 chrX 33161296 33161670 -129438260 + MLT1A2 LTR MaLR 1 374 0 240 184 0 0 chrX 33161877 33161915 -129438015 + MIR SINE MIR 204 241 -21 454 344 63 60 chrX 33162054 33162339 -129437591 - L2 LINE L2 -2 3270 2985 571 216 9 0 chrX 33162367 33162478 -129437452 - MER5A DNA MER1_type -77 112 1 365 326 119 37 chrX 33162483 33162811 -129437119 - L2 LINE L2 -337 2977 2623 923 215 61 16 chrX 33163238 33163485 -129436445 + MIR SINE MIR 4 261 -1 604 246 10 68 chrX 33163936 33164143 -129435787 + LTR16A1 LTR ERVL 251 445 -12 343 158 34 57 chrX 33164651 33164828 -129435102 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 * 359 227 12 12 chrX 33164798 33164970 -129434960 + GA-rich Low_complexity Low_complexity 1 172 0 192 213 0 0 chrX 33165005 33165066 -129434864 + GA-rich Low_complexity Low_complexity 2 62 0 826 232 109 25 chrX 33166580 33167066 -129432864 + MLT1G1 LTR MaLR 1 567 0 2010 124 0 4 chrX 33167105 33167371 -129432559 + AluSx SINE Alu 33 297 -15 245 252 14 28 chrX 33167527 33167670 -129432260 + CT-rich Low_complexity Low_complexity 3 143 0 434 215 11 28 chrX 33167702 33167879 -129432051 + CT-rich Low_complexity Low_complexity 4 177 0 531 195 0 53 chrX 33167892 33168082 -129431848 + CT-rich Low_complexity Low_complexity 1 180 0 373 241 103 42 chrX 33168587 33168755 -129431175 - MLT1G LTR MaLR -6 617 403 895 241 17 69 chrX 33168881 33169229 -129430701 - MLT1G LTR MaLR -260 330 1 615 291 37 0 chrX 33169464 33169653 -129430277 + Charlie8 DNA MER1_type 76 271 -2146 230 262 12 0 chrX 33169940 33170024 -129429906 + CT-rich Low_complexity Low_complexity 2 86 0 250 26 51 0 chrX 33170581 33170620 -129429310 + (TC)n Simple_repeat Simple_repeat 2 42 0 466 345 6 0 chrX 33171343 33171520 -129428410 + (TG)n Simple_repeat Simple_repeat 2 179 0 389 272 16 40 chrX 33172030 33172155 -129427775 + MIR SINE MIR 87 208 -54 220 217 0 0 chrX 33172627 33172673 -129427257 + MIR SINE MIR 150 195 -67 843 255 74 0 chrX 33173391 33173622 -129426308 + MIR SINE MIR 8 255 -7 6434 127 31 14 chrX 33173885 33174861 -129425069 - L1MA9 LINE L1 0 6312 5285 2482 83 0 0 chrX 33174861 33175163 -129424767 - AluSx SINE Alu -10 302 1 6434 127 31 14 chrX 33175163 33175584 -129424346 - L1MA9 LINE L1 -1027 5285 4873 214 297 0 27 chrX 33175591 33175665 -129424265 + L2 LINE L2 2914 2985 -287 802 279 14 70 chrX 33175683 33176096 -129423834 + LTR16B LTR ERVL 1 390 -74 255 280 67 150 chrX 33176151 33176451 -129423479 + L2 LINE L2 2998 3272 0 863 19 0 9 chrX 33178132 33178238 -129421692 + (CTATT)n Simple_repeat Simple_repeat 4 108 0 284 345 111 18 chrX 33179096 33179262 -129420668 - LTR67 LTR ERVL -267 290 109 1055 242 67 25 chrX 33179262 33179547 -129420383 - LTR16C LTR ERVL 0 491 195 303 49 0 0 chrX 33180241 33180282 -129419648 + (T)n Simple_repeat Simple_repeat 1 41 0 1307 255 18 12 chrX 33180438 33180775 -129419155 - LTR16A LTR ERVL -96 354 16 474 285 45 6 chrX 33180914 33181085 -129418845 - MIR SINE MIR -62 146 4 680 234 66 18 chrX 33181085 33181252 -129418678 - MER96 DNA MER1_type 0 175 1 642 294 41 32 chrX 33182653 33182997 -129416933 - MLT1I LTR MaLR 0 450 59 398 271 32 48 chrX 33183414 33183602 -129416328 + MLT1J2 LTR MaLR 266 450 0 206 69 0 0 chrX 33183604 33183633 -129416297 + L2 LINE L2 3243 3271 -1 814 128 88 20 chrX 33184613 33184761 -129415169 + MER6B DNA MER2_type 3 160 -50 1543 209 0 6 chrX 33184848 33185159 -129414771 + AluJb SINE Alu 1 309 -3 2112 123 0 0 chrX 33185324 33185624 -129414306 + AluSx SINE Alu 2 301 -11 787 302 38 38 chrX 33186169 33186537 -129413393 - LTR16A LTR ERVL -82 368 1 326 283 116 17 chrX 33186736 33186909 -129413021 - L2 LINE L2 -4 3309 3120 672 313 83 0 chrX 33186972 33187202 -129412728 - MIR SINE MIR -13 249 1 1581 187 79 97 chrX 33187426 33187490 -129412440 - LTR16C LTR ERVL -34 457 393 2192 96 3 0 chrX 33187490 33187781 -129412149 - AluSc SINE Alu -17 292 1 1581 187 79 97 chrX 33187781 33188171 -129411759 - LTR16C LTR ERVL -98 393 11 1397 168 9 8 chrX 33188237 33188684 -129411246 + MLT1D LTR MaLR 1 505 0 276 286 0 0 chrX 33189301 33189364 -129410566 + MIR SINE MIR 68 130 -78 535 285 26 36 chrX 33191166 33191359 -129408571 + MLT1H LTR MaLR 346 536 -13 560 282 92 23 chrX 33191646 33191820 -129408110 - MIR3 SINE MIR -3 205 20 391 286 8 8 chrX 33191854 33191973 -129407957 + MER117 DNA MER1_type 39 157 -40 229 261 23 80 chrX 33192575 33192663 -129407267 + L2 LINE L2 2995 3077 -195 1028 218 61 19 chrX 33192695 33193007 -129406923 - HsTC2 DNA Tc2 -3 1895 1571 220 395 19 6 chrX 33193395 33193557 -129406373 - L2 LINE L2 -527 2787 2624 1661 171 17 10 chrX 33193567 33193866 -129406064 + AluJo SINE Alu 1 301 -11 247 242 48 16 chrX 33194586 33194648 -129405282 - MLT1J LTR MaLR -211 300 237 689 327 46 31 chrX 33194663 33195051 -129404879 - LTR16C LTR ERVL -2 489 96 297 254 47 89 chrX 33195330 33195499 -129404431 - MIR3 SINE MIR -4 204 43 307 267 85 22 chrX 33196716 33196876 -129403054 + MIR SINE MIR 3 178 -63 472 296 34 28 chrX 33197261 33197437 -129402493 - MIR SINE MIR -79 183 7 353 218 56 84 chrX 33197564 33197706 -129402224 - MLT1H LTR MaLR -2 547 410 322 235 54 27 chrX 33197802 33197939 -129401991 - MLT1I LTR MaLR -267 142 79 269 252 147 28 chrX 33198101 33198242 -129401688 - MER2 DNA MER2_type -3 342 185 1287 131 19 0 chrX 33198242 33198448 -129401482 + MER2 DNA MER2_type 1 210 -135 345 310 205 0 chrX 33198986 33199157 -129400773 + MIR SINE MIR 38 243 -19 772 117 39 126 chrX 33199647 33199853 -129400077 - MER53 DNA DNA -1 188 1 1107 253 65 30 chrX 33199934 33200163 -129399767 - LTR16C LTR ERVL -39 452 204 1669 212 16 26 chrX 33200163 33200541 -129399389 - MLT1A2 LTR MaLR 0 374 1 1107 253 65 30 chrX 33200541 33200678 -129399252 - LTR16C LTR ERVL -287 204 73 262 165 33 22 chrX 33200975 33201066 -129398864 + GA-rich Low_complexity Low_complexity 2 93 0 1139 262 104 116 chrX 33201119 33201683 -129398247 - L2 LINE L2 -2 3311 2742 665 147 9 17 chrX 33201683 33201799 -129398131 + FLAM_A SINE Alu 10 124 -18 1139 262 104 116 chrX 33201799 33202424 -129397506 - L2 LINE L2 -571 2742 2001 3346 56 9 25 chrX 33202429 33202499 -129397431 + L1PA5 LINE L1 5717 5787 -367 2342 91 0 0 chrX 33202499 33202807 -129397123 + AluY SINE Alu 1 308 -3 3346 56 9 25 chrX 33202807 33203179 -129396751 + L1PA5 LINE L1 5787 6152 -2 378 91 0 0 chrX 33203859 33203914 -129396016 + (CA)n Simple_repeat Simple_repeat 1 55 0 198 103 0 0 chrX 33203915 33203944 -129395986 + (CACCAT)n Simple_repeat Simple_repeat 3 31 0 227 348 52 9 chrX 33204562 33204677 -129395253 + MIR SINE MIR 17 136 -72 1061 219 40 28 chrX 33204727 33204974 -129394956 + MIR SINE MIR 2 251 -11 317 169 34 17 chrX 33205014 33205073 -129394857 - MLT1C LTR MaLR 0 467 408 195 42 0 0 chrX 33205224 33205248 -129394682 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 262 326 78 85 chrX 33205272 33205446 -129394484 - L2 LINE L2 -50 3222 3049 1607 219 105 44 chrX 33205446 33205922 -129394008 + MLT1J LTR MaLR 5 509 -2 262 326 78 85 chrX 33205922 33206054 -129393876 - L2 LINE L2 -223 3049 2918 200 270 0 10 chrX 33206171 33206271 -129393659 + CT-rich Low_complexity Low_complexity 4 102 0 363 167 322 0 chrX 33206298 33206388 -129393542 - L2 LINE L2 -15 3298 3180 374 358 80 7 chrX 33206438 33206726 -129393204 + LTR16A LTR ERVL 1 309 -141 489 319 178 32 chrX 33206736 33207377 -129392553 - L2 LINE L2 -320 2952 2196 1753 173 13 0 chrX 33207479 33207786 -129392144 - AluJo SINE Alu -1 311 1 204 244 0 0 chrX 33208114 33208155 -129391775 + L2 LINE L2 3230 3270 -2 242 333 12 12 chrX 33208198 33208279 -129391651 - L3b LINE CR1 -246 1337 1257 189 286 0 0 chrX 33208513 33208562 -129391368 - L3b LINE CR1 -375 1208 1160 273 268 170 60 chrX 33210249 33210484 -129389446 + L2 LINE L2 2456 2716 -598 252 222 74 44 chrX 33210489 33210624 -129389306 + L2 LINE L2 2817 2955 -317 253 191 48 32 chrX 33210669 33210732 -129389198 + MLT1H LTR MaLR 469 532 -17 1196 330 65 14 chrX 33210760 33211279 -129388651 + MLT1K LTR MaLR 43 588 0 259 336 64 7 chrX 33211886 33212026 -129387904 + MARNA DNA Mariner 29 176 -410 271 220 66 110 chrX 33212618 33212800 -129387130 + MER3 DNA MER1_type 36 209 0 * 1108 168 0 39 chrX 33212800 33212847 -129387083 - MER3 DNA MER1_type -170 39 1 447 258 63 38 chrX 33212862 33213021 -129386909 + MIR SINE MIR 57 219 -43 1868 249 111 11 chrX 33213625 33214166 -129385764 + MLT1G1 LTR MaLR 1 595 0 2187 106 3 0 chrX 33214435 33214737 -129385193 + AluSx SINE Alu 3 305 -7 494 181 138 0 chrX 33215818 33215912 -129384018 - LTR16C LTR ERVL 0 491 385 1846 157 39 137 chrX 33215914 33216390 -129383540 - MLT2D LTR ERVL -2 513 1 1388 294 23 13 chrX 33216390 33216774 -129383156 - LTR16C LTR ERVL -102 389 2 592 270 70 97 chrX 33217078 33217575 -129382355 + MLT1J LTR MaLR 25 508 -3 327 242 174 8 chrX 33217617 33217749 -129382181 + L2 LINE L2 3160 3313 0 566 255 87 3 chrX 33217873 33218055 -129381875 + MIR SINE MIR 2 203 -59 601 330 29 43 chrX 33218327 33218770 -129381160 + L1ME2 LINE L1 5448 5884 -280 224 204 0 74 chrX 33219089 33219143 -129380787 + L2 LINE L2 3263 3312 -1 1759 181 143 10 chrX 33219263 33219677 -129380253 + Charlie4a DNA MER1_type 39 507 -1 248 279 15 0 chrX 33219856 33219924 -129380006 + A-rich Low_complexity Low_complexity 2 70 0 1633 255 59 25 chrX 33220354 33220825 -129379105 - LTR16C LTR ERVL -3 488 2 410 314 63 11 chrX 33220925 33221100 -129378830 + Charlie8 DNA MER1_type 1 184 -2233 1099 228 16 20 chrX 33222177 33222427 -129377503 + MIR SINE MIR 14 262 0 757 298 18 6 chrX 33223695 33223938 -129375992 + MIR SINE MIR 17 262 0 231 170 0 0 chrX 33224087 33224134 -129375796 + (CA)n Simple_repeat Simple_repeat 1 47 0 310 215 15 0 chrX 33224942 33225007 -129374923 - L2 LINE L2 -1 3312 3247 779 278 71 40 chrX 33225081 33225531 -129374399 + LTR16B LTR ERVL 1 464 0 203 240 80 27 chrX 33225821 33225896 -129374034 - MIR SINE MIR -1 261 183 317 274 0 0 chrX 33226417 33226498 -129373432 + MIR SINE MIR 73 153 -55 284 156 167 0 chrX 33226542 33226612 -129373318 + MER5A DNA MER1_type 4 87 -102 1039 286 94 51 chrX 33227437 33227906 -129372024 + MLT1J LTR MaLR 9 497 -14 917 295 21 0 chrX 33227940 33228181 -129371749 - LTR16A LTR ERVL -6 444 199 201 239 134 0 chrX 33228181 33228248 -129371682 + MIR SINE MIR 112 187 -75 289 299 0 0 chrX 33228558 33228635 -129371295 + L2 LINE L2 3194 3270 -2 1737 98 0 0 chrX 33228720 33228956 -129370974 - AluSg/x SINE Alu -5 305 70 253 323 11 21 chrX 33228978 33229071 -129370859 + MIR SINE MIR 100 191 -71 1072 217 44 9 chrX 33229723 33229949 -129369981 + MIR SINE MIR 10 243 -19 393 230 42 164 chrX 33230481 33230694 -129369236 - MLT1K LTR MaLR -196 392 206 349 321 30 15 chrX 33233774 33233905 -129366025 + MIR SINE MIR 32 164 -98 380 189 159 0 chrX 33234210 33234327 -129365603 + MIR SINE MIR 45 185 -77 303 198 86 12 chrX 33234506 33234587 -129365343 - MLT1K LTR MaLR 0 588 502 1419 228 37 26 chrX 33234663 33235044 -129364886 + LTR16C LTR ERVL 107 491 0 374 238 0 0 chrX 33235052 33235132 -129364798 - MLT1K LTR MaLR -110 478 399 467 301 9 0 chrX 33235642 33235755 -129364175 - MER81 DNA DNA 0 114 1 559 274 44 69 chrX 33235893 33236147 -129363783 + L1ME3 LINE L1 5583 5827 -294 1513 239 88 37 chrX 33236147 33236612 -129363318 - LTR16C LTR ERVL 0 491 3 559 274 44 69 chrX 33236612 33236718 -129363212 + L1ME3 LINE L1 5827 5934 -187 843 243 156 0 chrX 33236960 33237248 -129362682 - MER46C DNA MER2_type -1 337 5 333 216 27 14 chrX 33237472 33237546 -129362384 - MER5A DNA MER1_type -106 83 9 687 173 15 63 chrX 33237962 33238151 -129361779 + L1ME3 LINE L1 5988 6170 0 699 276 145 13 chrX 33238541 33238852 -129361078 + MLT1J LTR MaLR 149 500 -11 1138 231 151 41 chrX 33239021 33239506 -129360424 + MLT1H LTR MaLR 12 549 0 482 279 138 41 chrX 33240660 33241029 -129358901 + MLT1I LTR MaLR 5 409 0 2127 113 6 53 chrX 33241166 33241484 -129358446 + AluSx SINE Alu 1 303 -9 598 201 37 37 chrX 33243308 33243497 -129356433 + MER53 DNA DNA 1 189 0 801 230 85 5 chrX 33244671 33244871 -129355059 - LTR16C LTR ERVL 0 491 276 887 161 175 84 chrX 33244872 33245086 -129354844 - MER5C DNA MER1_type -1 323 75 1808 124 26 4 chrX 33245086 33245351 -129354579 - AluSx SINE Alu -9 303 33 887 161 175 84 chrX 33245351 33245422 -129354508 - MER5C DNA MER1_type -249 75 12 229 235 224 0 chrX 33245422 33245507 -129354423 - LTR16C LTR ERVL -213 278 175 189 229 0 0 chrX 33246040 33246075 -129353855 - MIR SINE MIR -137 71 37 350 263 9 61 chrX 33246087 33246201 -129353729 + MIR SINE MIR 105 212 -50 824 245 19 77 chrX 33246331 33246624 -129353306 + L1MC4 LINE L1 7640 7949 -93 351 0 0 0 chrX 33246624 33246663 -129353267 + (CA)n Simple_repeat Simple_repeat 2 40 0 824 245 19 77 chrX 33246663 33246703 -129353227 + L1MC4 LINE L1 7949 7990 -52 1804 151 27 3 chrX 33246703 33247001 -129352929 + AluJb SINE Alu 1 305 -7 824 245 19 77 chrX 33247001 33247094 -129352836 + L1MC4 LINE L1 7990 8042 0 3688 102 28 4 chrX 33247268 33247808 -129352122 - L1PB3 LINE L1 -2 6152 5600 968 283 111 11 chrX 33248376 33248726 -129351204 + MLT1L LTR MaLR 230 614 -1 307 294 37 18 chrX 33248950 33249059 -129350871 + MER5A DNA MER1_type 7 117 -72 370 308 57 64 chrX 33249812 33250267 -129349663 + LTR67 LTR ERVL 97 548 -9 1162 244 181 26 chrX 33250343 33250802 -129349128 - L1ME3A LINE L1 -111 6059 5530 259 263 298 0 chrX 33251282 33251396 -129348534 - MER96 DNA MER1_type? 0 175 28 397 287 140 6 chrX 33251409 33251573 -129348357 + MIR SINE MIR 75 260 -2 245 269 0 0 chrX 33252209 33252261 -129347669 + polypyrimidine Low_complexity Low_complexity 1 52 0 1023 193 44 62 chrX 33252320 33252708 -129347222 - L1MC5 LINE L1 -30 7931 7551 467 230 161 62 chrX 33253544 33253609 -129346321 + MER5A DNA MER1_type 7 64 -125 1556 167 21 28 chrX 33253609 33253896 -129346034 + AluJo SINE Alu 21 305 -7 467 230 161 62 chrX 33253896 33253991 -129345939 + MER5A DNA MER1_type 64 183 -6 824 290 41 8 chrX 33255862 33255960 -129343970 + MIR SINE MIR 8 101 -161 1110 273 91 26 chrX 33255960 33256421 -129343509 + LTR16C LTR ERVL 1 491 0 824 290 41 8 chrX 33256421 33256567 -129343363 + MIR SINE MIR 101 260 -2 219 69 0 0 chrX 33257169 33257198 -129342732 + (T)n Simple_repeat Simple_repeat 1 29 0 298 233 0 0 chrX 33257322 33257395 -129342535 - MLT1F LTR MaLR -16 579 507 372 235 85 40 chrX 33257440 33257664 -129342266 - MLT1F LTR MaLR -169 373 112 1485 223 50 55 chrX 33258040 33258516 -129341414 - MLT1K LTR MaLR -2 474 1 688 179 22 8 chrX 33259329 33259463 -129340467 - LTR16A LTR ERVL -172 278 143 692 249 6 12 chrX 33260772 33260937 -129338993 + MER5B DNA MER1_type 4 167 -11 230 235 7 140 chrX 33260939 33261075 -129338855 - MLT1H LTR MaLR 0 549 432 312 250 57 48 chrX 33261232 33261358 -129338572 - MLT1H LTR MaLR -264 162 51 421 260 58 45 chrX 33261495 33261649 -129338281 + MIR SINE MIR 50 205 -57 708 261 82 33 chrX 33262044 33262374 -129337556 + LTR16A LTR ERVL 105 450 0 2409 98 0 13 chrX 33265702 33266019 -129333911 - AluSq SINE Alu 0 313 1 345 246 82 49 chrX 33266162 33266284 -129333646 + MIR SINE MIR 84 209 -53 180 152 0 0 chrX 33266556 33266589 -129333341 + (TG)n Simple_repeat Simple_repeat 1 33 0 304 185 62 0 chrX 33267835 33267900 -129332030 + MIR SINE MIR 30 98 -110 600 267 104 9 chrX 33268017 33268238 -129331692 + MLT1H LTR MaLR 4 245 -304 223 288 0 61 chrX 33268474 33268540 -129331390 - L2 LINE L2 0 3272 3211 214 244 0 0 chrX 33268792 33268837 -129331093 + GA-rich Low_complexity Low_complexity 3 47 0 256 198 0 74 chrX 33268855 33268936 -129330994 - HsTC2 DNA Tc2 -1819 79 5 2247 124 0 0 chrX 33269020 33269319 -129330611 + AluSx SINE Alu 1 299 -13 2618 161 42 46 chrX 33271514 33271592 -129328338 - MLT2B1 LTR ERVL -2 518 441 195 42 0 0 chrX 33271592 33271616 -129328314 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 2618 161 42 46 chrX 33271616 33272057 -129327873 - MLT2B1 LTR ERVL -79 441 1 331 235 0 37 chrX 33272467 33272548 -129327382 - L2 LINE L2 -1 3312 3235 237 254 159 29 chrX 33272565 33272703 -129327227 - LTR67 LTR ERVL -19 538 383 271 318 91 98 chrX 33272959 33273223 -129326707 - L2 LINE L2 -71 3201 2940 720 228 138 0 chrX 33273409 33273598 -129326332 - MIR SINE MIR 0 262 48 1651 217 33 8 chrX 33273681 33274073 -129325857 + LTR16C LTR ERVL 54 455 -36 2317 146 0 32 chrX 33274596 33274973 -129324957 + MLT1A1 LTR MaLR 1 365 0 1809 242 78 43 chrX 33274974 33275549 -129324381 + MLT1G1 LTR MaLR 1 595 0 439 232 64 16 chrX 33276405 33276530 -129323400 + MIR SINE MIR 68 198 -64 1242 263 140 18 chrX 33276907 33277418 -129322512 + L2 LINE L2 2741 3313 0 276 219 0 0 chrX 33277543 33277625 -129322305 + (CA)n Simple_repeat Simple_repeat 1 82 0 180 228 0 0 chrX 33277696 33277753 -129322177 + (CA)n Simple_repeat Simple_repeat 2 58 0 192 266 0 0 chrX 33277802 33277911 -129322019 + (CA)n Simple_repeat Simple_repeat 2 110 0 2315 107 7 0 chrX 33277954 33278264 -129321666 - AluSx SINE Alu 0 312 1 222 331 97 55 chrX 33278281 33278426 -129321504 + L2 LINE L2 2890 3040 -232 1177 211 65 12 chrX 33278427 33278674 -129321256 + MIR SINE MIR 2 261 -1 373 347 8 0 chrX 33278906 33279027 -129320903 + MIR3 SINE MIR 87 208 0 429 301 102 11 chrX 33279138 33279314 -129320616 - MIR3 SINE MIR -3 205 14 618 313 62 0 chrX 33279471 33279666 -129320264 - MIR SINE MIR -13 249 43 307 260 0 40 chrX 33279909 33280009 -129319921 - MLT1H LTR MaLR 0 549 454 506 278 78 31 chrX 33280103 33280358 -129319572 - MLT1H LTR MaLR -270 279 13 315 343 98 0 chrX 33281168 33281311 -129318619 + MIR SINE MIR 105 261 -1 288 161 0 0 chrX 33281448 33281510 -129318420 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 266 298 57 24 chrX 33281512 33281636 -129318294 - L2 LINE L2 0 3313 3186 436 304 58 38 chrX 33281658 33281974 -129317956 - L3 LINE CR1 -9 1568 1173 2055 149 13 43 chrX 33282238 33282613 -129317317 + THE1B LTR MaLR 1 364 0 1088 258 99 21 chrX 33282814 33283237 -129316693 + LTR16C LTR ERVL 6 461 -30 257 68 14 68 chrX 33283370 33283443 -129316487 + (TC)n Simple_repeat Simple_repeat 1 69 0 300 179 36 32 chrX 33283448 33283705 -129316225 + CT-rich Low_complexity Low_complexity 1 258 0 248 143 40 46 chrX 33283753 33283928 -129316002 + CT-rich Low_complexity Low_complexity 1 174 0 23 0 0 0 chrX 33284452 33284475 -129315455 + AT_rich Low_complexity Low_complexity 1 23 0 183 206 164 14 chrX 33284793 33284866 -129315064 - MIR SINE MIR -10 252 169 659 251 111 5 chrX 33284870 33285077 -129314853 - MIR SINE MIR -6 256 28 604 262 75 26 chrX 33285148 33285415 -129314515 - LTR16A1 LTR ERVL -17 440 161 414 0 0 0 chrX 33285940 33285986 -129313944 + (CA)n Simple_repeat Simple_repeat 1 46 0 195 100 0 0 chrX 33286009 33286039 -129313891 + (TC)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chrX 33286039 33286064 -129313866 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chrX 33286443 33286473 -129313457 + AT_rich Low_complexity Low_complexity 1 30 0 1833 248 31 31 chrX 33286619 33287192 -129312738 + L1ME3A LINE L1 5589 6161 -9 30564 101 21 62 chrX 33289731 33291699 -129308231 + L1PA6 LINE L1 13 2059 -4095 2385 90 0 3 chrX 33291699 33291999 -129307931 + AluY SINE Alu 1 299 -12 30564 101 21 62 chrX 33291999 33296442 -129303488 + L1PA6 LINE L1 2059 6154 0 7082 59 5 1 chrX 33296445 33297580 -129302350 + L1PA7 LINE L1 5002 6139 -15 264 200 0 0 chrX 33297580 33297640 -129302290 + (TA)n Simple_repeat Simple_repeat 1 60 0 287 255 28 47 chrX 33297698 33297804 -129302126 - MIR3 SINE MIR -7 201 98 194 240 195 65 chrX 33297792 33297946 -129301984 - MIR SINE MIR -3 259 86 * 731 231 26 163 chrX 33298331 33298860 -129301070 - LTR16A1 LTR ERVL 0 457 1 489 271 71 29 chrX 33299430 33299570 -129300360 - L2 LINE L2 -5 3267 3122 1632 233 93 13 chrX 33299685 33300135 -129299795 + MLT1J LTR MaLR 19 504 -7 514 333 90 24 chrX 33300308 33300563 -129299367 + LTR16A LTR ERVL 25 296 -154 772 278 22 45 chrX 33300690 33301003 -129298927 + LTR16A LTR ERVL 145 450 0 342 358 0 0 chrX 33301247 33301378 -129298552 + MIR SINE MIR 24 153 -72 1263 188 18 5 chrX 33301410 33301628 -129298302 + MER58A DNA MER1_type 1 221 -3 1640 266 58 25 chrX 33301689 33301805 -129298125 - L2 LINE L2 -1 3312 3201 1732 184 97 27 chrX 33301805 33302175 -129297755 + MSTD LTR MaLR 1 396 0 1640 266 58 25 chrX 33302175 33302822 -129297108 - L2 LINE L2 -112 3201 2512 285 240 53 0 chrX 33303124 33303199 -129296731 + L2 LINE L2 2671 2749 -565 975 249 170 25 chrX 33303211 33303653 -129296277 + MLT1H1 LTR MaLR 50 555 0 268 385 73 4 chrX 33305246 33305480 -129294450 + L2 LINE L2 2811 3060 -212 384 232 11 0 chrX 33305560 33305655 -129294275 - LTR16C LTR ERVL -8 483 388 191 437 63 7 chrX 33305916 33306058 -129293872 + L2 LINE L2 3122 3271 -1 201 258 15 15 chrX 33306471 33306537 -129293393 + L2 LINE L2 2821 2886 -427 1157 234 75 51 chrX 33306537 33306990 -129292940 + MLT1C LTR MaLR 1 372 -2 1444 243 25 54 chrX 33306990 33307435 -129292495 + L2 LINE L2 2882 3313 0 514 306 104 10 chrX 33307493 33307686 -129292244 - MIR SINE MIR -48 214 4 369 0 0 0 chrX 33307817 33307858 -129292072 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 73 0 0 chrX 33307860 33307901 -129292029 + (GA)n Simple_repeat Simple_repeat 2 42 0 779 264 58 39 chrX 33308091 33308473 -129291457 + LTR16C LTR ERVL 64 452 -39 183 310 92 23 chrX 33308489 33308576 -129291354 - L2 LINE L2 -26 3246 3154 201 261 31 31 chrX 33308829 33308894 -129291036 - L2 LINE L2 -36 3236 3172 478 418 45 16 chrX 33310301 33310610 -129289320 - L2 LINE L2 0 3272 2955 1712 174 37 6 chrX 33310650 33310971 -129288959 - MSTB LTR MaLR 0 426 96 1788 171 33 6 chrX 33311073 33311407 -129288523 - MSTB LTR MaLR -83 343 1 1511 229 95 36 chrX 33311502 33312083 -129287847 + L1MC5 LINE L1 7312 7926 -35 279 319 144 6 chrX 33312089 33312249 -129287681 - L2 LINE L2 -342 2972 2791 1868 206 62 9 chrX 33312525 33312961 -129286969 - MLT1C LTR MaLR -8 459 1 1575 203 60 34 chrX 33314112 33314526 -129285404 + MLT1C LTR MaLR 8 432 -35 343 272 19 19 chrX 33314908 33315011 -129284919 - L2 LINE L2 -1 3271 3169 1747 166 58 76 chrX 33315307 33315704 -129284226 + MLT1B LTR MaLR 1 390 0 245 301 122 32 chrX 33315873 33316029 -129283901 + MIR SINE MIR 21 190 -72 2749 110 0 0 chrX 33316078 33316442 -129283488 - THE1B LTR MaLR 0 364 1 670 249 49 101 chrX 33316444 33316655 -129283275 - LTR16C LTR ERVL -14 477 286 1942 158 0 0 chrX 33316655 33316970 -129282960 + AluJo SINE Alu 1 315 0 670 249 49 101 chrX 33316970 33317083 -129282847 - LTR16C LTR ERVL -205 286 169 1580 176 133 18 chrX 33317087 33317484 -129282446 - MLT1D LTR MaLR 0 505 63 2231 157 41 10 chrX 33317574 33317987 -129281943 + MSTB1 LTR MaLR 7 432 0 302 252 144 50 chrX 33318205 33318383 -129281547 - MIR SINE MIR -59 203 18 1380 217 110 10 chrX 33318928 33319311 -129280619 + LTR16C LTR ERVL 71 491 0 313 206 33 11 chrX 33319607 33319699 -129280231 + L1MC5 LINE L1 7832 7925 -36 465 286 110 9 chrX 33319770 33320125 -129279805 + LTR16C LTR ERVL 84 491 0 1700 164 17 24 chrX 33320259 33320552 -129279378 + AluJb SINE Alu 1 291 -21 403 297 55 16 chrX 33321314 33321442 -129278488 + MLT1G1 LTR MaLR 139 271 -284 1640 131 25 0 chrX 33321465 33321748 -129278182 + L1MA8 LINE L1 5988 6277 -14 3050 135 4 8 chrX 33321748 33322215 -129277715 + L1PB4 LINE L1 5683 6154 -2 926 176 0 16 chrX 33322241 33322428 -129277502 - L1MA3 LINE L1 0 6305 6122 989 198 118 4 chrX 33322490 33322727 -129277203 + MLT1G1 LTR MaLR 332 595 0 642 286 145 7 chrX 33322783 33323066 -129276864 + MLT1J2 LTR MaLR 1 322 -128 298 194 16 0 chrX 33323376 33323438 -129276492 + MLT1J2 LTR MaLR 388 450 0 251 356 45 23 chrX 33323511 33323688 -129276242 + L2 LINE L2 3130 3310 -3 479 284 105 0 chrX 33323692 33323915 -129276015 - MIR SINE MIR -10 252 1 207 292 0 0 chrX 33324349 33324397 -129275533 + (TG)n Simple_repeat Simple_repeat 1 48 0 401 314 75 64 chrX 33326815 33327255 -129272675 + LTR16B LTR ERVL 1 445 -5 377 282 57 32 chrX 33327653 33327777 -129272153 + L2 LINE L2 3142 3268 -4 483 261 97 36 chrX 33328239 33328309 -129271621 - MIR SINE MIR -42 220 156 2453 66 10 3 chrX 33328309 33328612 -129271318 - AluY SINE Alu -6 305 1 483 261 97 36 chrX 33328612 33328736 -129271194 - MIR SINE MIR -106 156 14 350 260 23 11 chrX 33329114 33329256 -129270674 - MIR SINE MIR -72 190 8 986 214 5 0 chrX 33330100 33330287 -129269643 + AluJo SINE Alu 123 310 -2 383 248 8 33 chrX 33330319 33330440 -129269490 - MER45C DNA AcHobo -102 851 734 692 189 5 13 chrX 33330535 33330717 -129269213 - MER45C DNA AcHobo -686 267 55 379 284 88 34 chrX 33330735 33330939 -129268991 + LTR16C LTR ERVL 115 329 -162 2000 184 51 51 chrX 33331086 33331553 -129268377 - MLT1C LTR MaLR 0 467 1 332 213 13 0 chrX 33331666 33331741 -129268189 - MER5A DNA MER1_type -83 106 31 239 169 12 133 chrX 33332404 33332487 -129267443 - MLT1H LTR MaLR 0 549 477 599 229 46 67 chrX 33332545 33332785 -129267145 - MLT1H LTR MaLR -248 301 67 693 241 107 23 chrX 33333732 33333948 -129265982 + MIR SINE MIR 17 250 -12 1085 226 15 11 chrX 33333960 33334226 -129265704 - MER46C DNA MER2_type -2 336 70 399 119 0 0 chrX 33334889 33334956 -129264974 + (TG)n Simple_repeat Simple_repeat 2 68 0 531 264 38 54 chrX 33335451 33335543 -129264387 - LTR16C LTR ERVL -3 466 374 2477 152 59 2 chrX 33335543 33335983 -129263947 - MLT1C LTR MaLR -2 465 1 531 264 38 54 chrX 33335983 33336154 -129263776 - LTR16C LTR ERVL -95 374 227 2744 88 54 10 chrX 33336220 33336628 -129263302 + MSTA LTR MaLR 3 428 0 601 312 52 13 chrX 33337763 33337994 -129261936 + MIR SINE MIR 23 262 0 740 211 177 93 chrX 33338012 33338504 -129261426 - MLT1H LTR MaLR -3 546 14 400 299 41 0 chrX 33339150 33339247 -129260683 - L2 LINE L2 -6 3307 3207 305 200 17 0 chrX 33339502 33339562 -129260368 - MIR SINE MIR -38 224 164 893 261 146 50 chrX 33339563 33339974 -129259956 - MLT1H LTR MaLR 0 549 80 2026 136 0 3 chrX 33339974 33340283 -129259647 - AluJb SINE Alu -4 308 1 893 261 146 50 chrX 33340283 33340372 -129259558 - MLT1H LTR MaLR -469 80 1 544 250 18 0 chrX 33340374 33340520 -129259410 - MIR SINE MIR -63 145 17 209 200 25 0 chrX 33341518 33341558 -129258372 + MIR SINE MIR 2 42 -220 376 265 29 20 chrX 33341852 33341954 -129257976 - MLT1K LTR MaLR -343 245 143 620 176 164 24 chrX 33342136 33342301 -129257629 - MER5A DNA MER1_type -1 188 1 2497 68 0 0 chrX 33343138 33343447 -129256483 - AluSc SINE Alu 0 309 1 1170 185 47 126 chrX 33343587 33344050 -129255880 - MLT2D LTR ERVL -10 510 1 296 274 71 12 chrX 33344075 33344159 -129255771 + L2 LINE L2 3225 3313 0 266 210 74 12 chrX 33344897 33344978 -129254952 + MIR SINE MIR 113 198 -64 220 219 0 0 chrX 33344989 33345030 -129254900 - MIR SINE MIR -6 256 216 193 231 31 46 chrX 33345508 33345573 -129254357 + MIR SINE MIR 188 251 -11 780 253 43 17 chrX 33345702 33345935 -129253995 - L2 LINE L2 -7 3306 3068 423 306 61 7 chrX 33345933 33346080 -129253850 + MIR SINE MIR 91 245 -17 * 766 244 122 48 chrX 33346596 33346960 -129252970 - LTR33 LTR ERVL -1 520 110 2225 112 0 0 chrX 33346960 33347272 -129252658 + AluSx SINE Alu 1 312 0 766 244 122 48 chrX 33347272 33347391 -129252539 - LTR33 LTR ERVL -411 110 1 956 172 58 6 chrX 33347449 33347623 -129252307 - MER5A DNA MER1_type 0 189 7 826 173 0 8 chrX 33347624 33347757 -129252173 - FLAM_A SINE Alu -1 132 1 203 42 0 0 chrX 33347759 33347783 -129252147 - MER5A DNA MER1_type -165 24 1 265 156 46 28 chrX 33349471 33349580 -129250350 + (CA)n Simple_repeat Simple_repeat 1 111 0 337 91 73 0 chrX 33353188 33353243 -129246687 + MLT1J1 LTR MaLR 1 59 -387 319 145 29 0 chrX 33353366 33353435 -129246495 + CT-rich Low_complexity Low_complexity 3 73 0 602 238 81 57 chrX 33353449 33353570 -129246360 + MLT1J1 LTR MaLR 177 294 -152 996 281 66 23 chrX 33353570 33354008 -129245922 - LTR16A1 LTR ERVL 0 457 1 602 238 81 57 chrX 33354008 33354134 -129245796 + MLT1J1 LTR MaLR 294 430 -16 414 259 0 0 chrX 33354169 33354254 -129245676 - MER58B DNA MER1_type 0 341 257 407 309 24 18 chrX 33354840 33355005 -129244925 + HERVL LTR ERVL 5160 5325 -329 481 325 39 31 chrX 33355139 33355425 -129244505 + LTR16A LTR ERVL 57 344 -106 4620 173 37 11 chrX 33355451 33356958 -129242972 + L1MB8 LINE L1 4620 6166 -12 236 214 14 86 chrX 33356958 33357028 -129242902 + LTR16A LTR ERVL 379 443 -7 280 185 93 130 chrX 33357805 33357913 -129242017 - L2 LINE L2 -14 3258 3155 753 213 91 30 chrX 33358129 33358326 -129241604 + MER3 DNA MER1_type 1 209 0 736 306 62 22 chrX 33358564 33358888 -129241042 - MER102b DNA MER1_type 0 341 5 280 225 81 90 chrX 33358984 33359095 -129240835 + L2 LINE L2 3163 3272 0 194 298 33 91 chrX 33360008 33360129 -129239801 - MIR3 SINE MIR -11 197 84 468 130 210 111 chrX 33361156 33361201 -129238729 - MER5A DNA MER1_type -3 186 147 2290 90 0 0 chrX 33361201 33361500 -129238430 + AluSx SINE Alu 1 299 -13 468 130 210 111 chrX 33361500 33361616 -129238314 - MER5A DNA MER1_type -42 147 9 422 182 20 0 chrX 33361796 33361895 -129238035 + GA-rich Low_complexity Low_complexity 4 104 0 617 163 192 6 chrX 33362604 33362752 -129237178 + MER5A DNA MER1_type 4 183 -6 224 235 49 131 chrX 33363664 33363733 -129236197 + L3 LINE CR1 615 688 -889 2168 109 3 6 chrX 33363733 33364046 -129235884 + AluSx SINE Alu 1 312 0 224 235 49 131 chrX 33364046 33364159 -129235771 + L3 LINE CR1 688 782 -795 809 307 80 23 chrX 33364342 33364694 -129235236 + L3 LINE CR1 797 1168 -409 275 279 153 8 chrX 33365096 33365279 -129234651 - MLT1J LTR MaLR -174 392 205 613 304 60 54 chrX 33365338 33365822 -129234108 - L2 LINE L2 -846 2468 1982 1886 178 27 104 chrX 33366233 33366788 -129233142 + L1ME3 LINE L1 5651 6162 0 2202 99 3 0 chrX 33367146 33367450 -129232480 - AluSx SINE Alu -6 306 2 364 306 39 34 chrX 33367600 33367806 -129232124 + L3 LINE CR1 1150 1356 -221 278 339 8 25 chrX 33367810 33367928 -129232002 - L3 LINE CR1 -471 1106 991 218 260 60 30 chrX 33368029 33368129 -129231801 - L3 LINE CR1 -621 956 854 248 304 91 60 chrX 33368353 33368742 -129231188 + LTR33 LTR ERVL 4 379 -142 2251 123 42 25 chrX 33368742 33369100 -129230830 - THE1B LTR MaLR 0 364 1 12143 85 11 0 chrX 33369100 33370663 -129229267 - THE1B-int LTR MaLR 0 1580 1 2241 154 31 14 chrX 33370663 33371021 -129228909 - THE1B LTR MaLR 0 364 1 248 304 91 60 chrX 33371021 33371097 -129228833 + LTR33 LTR ERVL 378 513 -8 319 296 45 45 chrX 33371490 33371653 -129228277 - MIR3 SINE MIR -4 204 43 394 77 62 15 chrX 33371877 33371942 -129227988 - MSTC LTR MaLR -360 68 1 7729 181 99 33 chrX 33371955 33373577 -129226353 - MLT1A1-int LTR MaLR -5 1730 2 1490 176 33 109 chrX 33373578 33373971 -129225959 - MLT1A1 LTR MaLR 0 365 3 5421 102 24 32 chrX 33374287 33374642 -129225288 - L1MA7 LINE L1 -1 6290 5934 1885 146 0 3 chrX 33374642 33374936 -129224994 - AluJb SINE Alu -19 293 1 5421 102 24 32 chrX 33374936 33375462 -129224468 - L1MA7 LINE L1 -357 5934 5416 1267 276 75 8 chrX 33375462 33375824 -129224106 + LTR16C LTR ERVL 105 490 -1 4235 137 26 0 chrX 33376315 33377011 -129222919 + L1MB3 LINE L1 5445 6158 -25 679 195 0 8 chrX 33377139 33377257 -129222673 - FLAM_C SINE Alu -25 118 2 1596 242 35 42 chrX 33377361 33377815 -129222115 - LTR16A1 LTR ERVL 0 457 7 358 311 25 8 chrX 33377903 33378025 -129221905 + MIR SINE MIR 35 158 -104 322 302 113 63 chrX 33378077 33378219 -129221711 + MLT1K LTR MaLR 110 243 -345 2165 112 0 0 chrX 33378219 33378515 -129221415 - AluSx SINE Alu -16 296 1 322 302 113 63 chrX 33378515 33378769 -129221161 + MLT1K LTR MaLR 243 526 -62 207 0 0 0 chrX 33378772 33378795 -129221135 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 278 269 0 0 chrX 33378824 33378891 -129221039 + MLT1K LTR MaLR 522 588 0 211 283 19 0 chrX 33378894 33378947 -129220983 + MIR SINE MIR 154 207 -55 209 235 81 128 chrX 33379443 33379592 -129220338 + MER5A DNA MER1_type 48 189 0 1416 249 104 39 chrX 33380206 33380667 -129219263 - LTR16C LTR ERVL 0 491 1 1211 186 54 120 chrX 33380736 33381160 -129218770 - MSTD LTR MaLR 0 396 1 758 233 100 54 chrX 33383071 33383322 -129216608 - MLT1H LTR MaLR 0 549 311 2434 157 60 0 chrX 33383322 33383724 -129216206 + MSTB LTR MaLR 1 426 0 758 233 100 54 chrX 33383724 33383893 -129216037 - MLT1H LTR MaLR -238 311 42 6741 22 4 0 chrX 33383893 33384668 -129215262 + L1PA4 LINE L1 5378 6155 0 758 233 100 54 chrX 33384668 33384712 -129215218 - MLT1H LTR MaLR -507 42 1 277 250 153 51 chrX 33386944 33387140 -129212790 - MLT1J LTR MaLR -8 503 288 847 227 36 5 chrX 33387179 33387373 -129212557 - MLT1J LTR MaLR -311 200 1 1061 309 91 36 chrX 33387702 33388282 -129211648 + L3 LINE CR1 445 1056 -521 652 276 168 67 chrX 33388286 33388767 -129211163 + MLT1H LTR MaLR 20 549 0 510 344 199 12 chrX 33388767 33388962 -129210968 + L3 LINE CR1 1069 1226 -351 1427 209 117 3 chrX 33388962 33389288 -129210642 + MLT1A1 LTR MaLR 1 363 -2 510 344 199 12 chrX 33389288 33389438 -129210492 + L3 LINE CR1 1226 1479 -98 180 171 0 49 chrX 33390468 33390509 -129209421 + L2 LINE L2 3168 3206 -107 262 355 6 29 chrX 33391097 33391269 -129208661 + GA-rich Low_complexity Low_complexity 3 170 0 984 163 27 63 chrX 33391577 33391798 -129208132 + MER20 DNA MER1_type 1 213 -6 583 204 136 14 chrX 33391802 33391949 -129207981 + MER5A DNA MER1_type 25 189 0 908 147 7 0 chrX 33391993 33392136 -129207794 - MER3 DNA MER1_type -52 157 14 2404 158 44 7 chrX 33392387 33392844 -129207086 - Charlie4a DNA MER1_type 0 508 35 500 243 7 56 chrX 33392884 33393028 -129206902 - MLT1J2 LTR MaLR -201 249 113 1767 144 7 3 chrX 33393219 33393511 -129206419 + AluSx SINE Alu 5 297 -15 858 217 50 130 chrX 33394728 33394999 -129204931 + L1MC4 LINE L1 7597 7814 -228 2464 141 8 0 chrX 33394999 33395361 -129204569 + MLT1A1 LTR MaLR 1 365 0 858 217 50 130 chrX 33395361 33395572 -129204358 + L1MC4 LINE L1 7814 8040 -2 207 0 0 0 chrX 33395599 33395622 -129204308 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1783 170 3 0 chrX 33395622 33395906 -129204024 - AluJb SINE Alu -24 288 1 1208 132 159 40 chrX 33396073 33396396 -129203534 + MER33 DNA MER1_type 1 315 -9 397 299 192 23 chrX 33396584 33396820 -129203110 - L2 LINE L2 -315 2957 2686 1241 243 187 39 chrX 33396982 33397500 -129202430 + MLT1G1 LTR MaLR 1 595 0 323 240 94 0 chrX 33398572 33398668 -129201262 - MIR SINE MIR -74 188 84 2904 77 3 11 chrX 33398835 33399213 -129200717 + THE1C LTR MaLR 1 375 0 1192 206 95 14 chrX 33399884 33400180 -129199750 - MER5C DNA MER1_type -4 320 1 189 257 238 38 chrX 33400419 33400524 -129199406 - MIR3 SINE MIR -73 135 10 205 256 12 85 chrX 33401221 33401303 -129198627 + MIR SINE MIR 110 185 -77 536 246 119 0 chrX 33403641 33403775 -129196155 - MIR SINE MIR -99 163 14 389 250 17 75 chrX 33404562 33404682 -129195248 - L2 LINE L2 -8 3305 3193 372 237 127 34 chrX 33404706 33404824 -129195106 + L2 LINE L2 3142 3270 -2 355 292 88 18 chrX 33404832 33405003 -129194927 - MIR SINE MIR -51 211 29 372 157 114 0 chrX 33405156 33405226 -129194704 + L1MC4a LINE L1 6670 6747 -1061 1110 260 92 2 chrX 33405226 33405626 -129194304 + L1MC4 LINE L1 7607 8042 0 441 0 0 0 chrX 33406238 33406287 -129193643 + (TG)n Simple_repeat Simple_repeat 2 50 0 2114 103 0 3 chrX 33406492 33406792 -129193138 + AluSc SINE Alu 1 299 -10 2097 74 3 11 chrX 33407520 33407805 -129192125 + AluSp SINE Alu 1 283 -30 513 306 38 11 chrX 33407886 33408151 -129191779 - L1MEd LINE L1 -3423 2706 2435 390 276 19 19 chrX 33408151 33408256 -129191674 + L2 LINE L2 3194 3298 -15 1747 141 3 24 chrX 33408260 33408551 -129191379 + AluSx SINE Alu 1 285 -27 354 306 10 5 chrX 33408568 33408777 -129191153 - L1MEd LINE L1 -3692 2437 2228 1322 188 18 47 chrX 33408794 33409071 -129190859 + AluJb SINE Alu 5 273 -39 1107 217 57 184 chrX 33409352 33410033 -129189897 + MLT1G LTR MaLR 1 590 0 1678 168 34 0 chrX 33410179 33410352 -129189578 - AluJo SINE Alu -5 307 118 186 71 0 0 chrX 33410352 33410380 -129189550 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 1678 168 34 0 chrX 33410380 33410503 -129189427 - AluJo SINE Alu -194 118 1 1749 263 93 88 chrX 33410564 33410825 -129189105 - L1MEd LINE L1 -4887 1232 974 441 0 0 0 chrX 33410825 33410874 -129189056 + (TG)n Simple_repeat Simple_repeat 2 50 0 1749 263 93 88 chrX 33410874 33410892 -129189038 - L1MEd LINE L1 -5145 974 958 1272 225 52 0 chrX 33410892 33411063 -129188867 - AluJo SINE Alu 0 305 112 423 0 0 0 chrX 33411063 33411110 -129188820 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1272 225 52 0 chrX 33411110 33411229 -129188701 - AluJo SINE Alu -193 112 1 1749 263 93 88 chrX 33411229 33411380 -129188550 - L1MEd LINE L1 -5161 958 809 1324 148 184 4 chrX 33411380 33411636 -129188294 + AluJb SINE Alu 1 302 0 1749 263 93 88 chrX 33411636 33411884 -129188046 - L1MEd LINE L1 -5310 809 564 2332 88 0 0 chrX 33411884 33412190 -129187740 + AluSg1 SINE Alu 1 306 -3 1749 263 93 88 chrX 33412190 33412729 -129187201 - L1MEd LINE L1 -5555 564 5 489 208 97 64 chrX 33413068 33413217 -129186713 + MIR SINE MIR 13 170 -92 3260 159 26 13 chrX 33413217 33413256 -129186674 - MLT2B3 LTR ERVL 0 554 517 591 62 0 0 chrX 33413256 33413336 -129186594 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 3260 159 26 13 chrX 33413336 33413843 -129186087 - MLT2B3 LTR ERVL -37 517 1 489 208 97 64 chrX 33413843 33413886 -129186044 + MIR SINE MIR 170 210 -52 419 283 141 1 chrX 33414259 33414417 -129185513 - MIR3 SINE MIR -8 200 21 691 243 129 62 chrX 33415636 33415807 -129184123 + MLT1J2 LTR MaLR 64 222 -228 1042 170 39 0 chrX 33415807 33415989 -129183941 + MER5A DNA MER1_type 1 189 0 691 243 129 62 chrX 33415989 33416158 -129183772 + MLT1J2 LTR MaLR 222 427 -23 1839 178 162 88 chrX 33416664 33417270 -129182660 + MLT1E1 LTR MaLR 4 654 0 674 263 91 93 chrX 33417293 33417729 -129182201 + LTR16A1 LTR ERVL 2 407 -50 200 174 0 43 chrX 33418037 33418083 -129181847 + GA-rich Low_complexity Low_complexity 5 48 0 934 239 132 39 chrX 33418522 33418722 -129181208 - LTR16C LTR ERVL -6 485 305 1803 130 0 70 chrX 33418722 33419053 -129180877 + AluJb SINE Alu 1 308 -4 934 239 132 39 chrX 33419053 33419207 -129180723 - LTR16C LTR ERVL -186 305 98 1661 173 48 57 chrX 33419489 33419878 -129180052 + MLT1B LTR MaLR 1 593 0 813 163 0 22 chrX 33420025 33420160 -129179770 + AluJo SINE Alu 1 132 -170 252 245 43 96 chrX 33420518 33420566 -129179364 + L2 LINE L2 3223 3265 -48 881 215 13 0 chrX 33420566 33420724 -129179206 + AluJo SINE Alu 137 296 -6 252 245 43 96 chrX 33420724 33420769 -129179161 + L2 LINE L2 3265 3311 -2 187 368 0 0 chrX 33420804 33420880 -129179050 - MIR3 SINE MIR -11 197 122 1705 213 90 25 chrX 33420939 33421338 -129178592 + LTR16C LTR ERVL 67 491 0 228 236 47 85 chrX 33421344 33421450 -129178480 - MIR3 SINE MIR -95 113 12 2060 165 25 6 chrX 33421751 33422109 -129177821 - MLT1A1 LTR MaLR 0 365 1 206 185 74 12 chrX 33422313 33422394 -129177536 + (CA)n Simple_repeat Simple_repeat 1 86 0 226 244 61 37 chrX 33422433 33422597 -129177333 + (CA)n Simple_repeat Simple_repeat 2 169 0 1971 266 63 17 chrX 33423451 33424083 -129175847 - MLT2F LTR ERVL 0 663 3 738 252 129 39 chrX 33424169 33424532 -129175398 - MLT1H LTR MaLR 0 542 23 226 327 36 9 chrX 33425089 33425199 -129174731 + MIR SINE MIR 150 262 0 1863 249 92 4 chrX 33425241 33425774 -129174156 - MLT1G LTR MaLR -9 581 2 598 296 76 14 chrX 33426019 33426242 -129173688 - MIR SINE MIR -17 245 9 952 258 189 20 chrX 33427519 33427915 -129172015 + MLT1K LTR MaLR 124 586 -2 2287 86 3 0 chrX 33428757 33429060 -129170870 + AluSp SINE Alu 1 304 -9 499 83 0 24 chrX 33429448 33429532 -129170398 + (TG)n Simple_repeat Simple_repeat 1 82 0 432 236 312 0 chrX 33429669 33429826 -129170104 - MIR SINE MIR -10 252 47 189 326 122 14 chrX 33429934 33430081 -129169849 + L2 LINE L2 3106 3268 -4 350 301 45 15 chrX 33430165 33430298 -129169632 + MIR SINE MIR 126 262 0 689 251 135 28 chrX 33431379 33431852 -129168078 + MLT1H1 LTR MaLR 1 555 0 2236 75 0 3 chrX 33432726 33433018 -129166912 + AluSq SINE Alu 1 291 -22 3124 107 5 0 chrX 33433154 33433586 -129166344 + MER57B LTR ERV1 1 434 0 740 263 28 32 chrX 33434248 33434465 -129165465 - MIR SINE MIR 0 262 47 808 155 31 0 chrX 33434585 33434714 -129165216 + FLAM_A SINE Alu 1 133 0 796 121 14 0 chrX 33434716 33434857 -129165073 + (GGAA)n Simple_repeat Simple_repeat 2 144 0 360 0 0 0 chrX 33436030 33436070 -129163860 + (TC)n Simple_repeat Simple_repeat 2 41 0 245 300 50 20 chrX 33436831 33436931 -129162999 + MIR SINE MIR 39 141 -67 2034 234 71 21 chrX 33438872 33439453 -129160477 - L1ME3 LINE L1 -1 6161 5552 325 160 0 53 chrX 33439516 33439591 -129160339 - MIR SINE MIR 0 262 192 400 306 19 0 chrX 33439737 33439845 -129160085 - MIR SINE MIR -62 146 37 819 249 137 59 chrX 33439973 33440514 -129159416 - MLT1G1 LTR MaLR -2 593 11 700 321 28 5 chrX 33440975 33441193 -129158737 + MIR SINE MIR 20 242 -20 386 160 132 0 chrX 33441273 33441379 -129158551 - L1ME3A LINE L1 -66 6104 5985 222 302 88 85 chrX 33442453 33442781 -129157149 + L2 LINE L2 2896 3224 -48 1302 251 47 21 chrX 33442795 33443217 -129156713 + LTR16C LTR ERVL 4 436 -55 15501 91 14 70 chrX 33443221 33443403 -129156527 - Tigger1 DNA MER2_type 0 2418 2227 741 209 50 0 chrX 33443403 33443571 -129156359 + FRAM SINE Alu 1 175 0 15501 91 14 70 chrX 33443571 33444342 -129155588 - Tigger1 DNA MER2_type -191 2227 1415 2254 108 10 0 chrX 33444342 33444639 -129155291 - AluSx SINE Alu -12 300 1 15501 91 14 70 chrX 33444639 33446105 -129153825 - Tigger1 DNA MER2_type -1003 1415 1 310 137 20 0 chrX 33446105 33446156 -129153774 + LTR16C LTR ERVL 434 485 -6 218 191 0 0 chrX 33446166 33446208 -129153722 + L2 LINE L2 3272 3313 0 579 283 164 0 chrX 33447084 33447303 -129152627 - MIR SINE MIR 0 262 8 2372 88 27 3 chrX 33447433 33447640 -129152290 - MER39 LTR ERV1 0 707 506 2652 124 30 28 chrX 33447640 33447924 -129152006 - MSTA LTR MaLR 0 428 141 2238 104 7 3 chrX 33447924 33448233 -129151697 + AluY SINE Alu 1 310 -1 2652 124 30 28 chrX 33448233 33448375 -129151555 - MSTA LTR MaLR -287 141 1 2372 88 27 3 chrX 33448375 33448761 -129151169 - MER39 LTR ERV1 -201 506 5 1037 268 11 0 chrX 33448765 33449026 -129150904 - LTR16C LTR ERVL -17 474 211 201 244 0 0 chrX 33449185 33449226 -129150704 - MIR SINE MIR -105 157 117 2411 78 0 23 chrX 33449797 33450104 -129149826 + AluSx SINE Alu 2 301 -11 2302 194 32 22 chrX 33450267 33450766 -129149164 + MLT1D LTR MaLR 1 504 -1 241 292 25 119 chrX 33451081 33451283 -129148647 - MER5A DNA MER1_type 0 189 7 2275 83 49 0 chrX 33451406 33451694 -129148236 + AluSq SINE Alu 1 302 -11 1111 261 63 74 chrX 33451902 33452187 -129147743 + MLT1L LTR MaLR 5 282 -333 688 221 15 0 chrX 33452187 33452318 -129147612 + FLAM_A SINE Alu 1 133 0 1111 261 63 74 chrX 33452318 33452603 -129147327 + MLT1L LTR MaLR 282 569 -46 1015 216 71 56 chrX 33452686 33452893 -129147037 + MER2 DNA MER2_type 1 216 -129 404 78 250 0 chrX 33452893 33452957 -129146973 + MADE1 DNA Mariner 1 80 0 1015 216 71 56 chrX 33452957 33453087 -129146843 + MER2 DNA MER2_type 216 343 -2 3035 124 30 14 chrX 33453087 33453585 -129146345 + L1MA7 LINE L1 5784 6289 -2 577 95 0 0 chrX 33453597 33453671 -129146259 - AluSg/x SINE Alu -19 291 218 1727 249 80 16 chrX 33453703 33454193 -129145737 + MLT1G1 LTR MaLR 75 595 0 1242 211 0 0 chrX 33454247 33454470 -129145460 - MER58A DNA MER1_type 0 224 2 324 176 0 0 chrX 33455158 33455226 -129144704 + CT-rich Low_complexity Low_complexity 1 68 0 1600 277 59 23 chrX 33455391 33456246 -129143684 + HAL1 LINE L1 1 993 -1514 1071 236 51 8 chrX 33456251 33456488 -129143442 - MIR SINE MIR -1 261 15 2531 228 51 68 chrX 33456492 33457529 -129142401 + HAL1 LINE L1 998 2017 -490 1020 228 174 45 chrX 33457534 33457863 -129142067 - MLT1H LTR MaLR -4 545 133 2439 169 35 52 chrX 33457863 33458377 -129141553 + MLT1D LTR MaLR 1 505 0 1020 228 174 45 chrX 33458377 33458530 -129141400 - MLT1H LTR MaLR -416 133 1 1044 214 114 46 chrX 33458554 33458923 -129141007 + HAL1 LINE L1 2095 2488 -19 226 216 113 52 chrX 33459697 33459754 -129140176 + MIR SINE MIR 98 165 -97 2169 139 58 0 chrX 33459754 33460100 -129139830 - MER47A DNA MER2_type 0 366 1 226 216 113 52 chrX 33460100 33460139 -129139791 + MIR SINE MIR 165 200 -62 360 111 0 0 chrX 33460140 33460194 -129139736 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1798 159 0 0 chrX 33460198 33460474 -129139456 - AluJo SINE Alu -30 282 7 598 221 86 66 chrX 33460587 33460935 -129138995 + MLT1H LTR MaLR 100 549 0 1540 183 33 36 chrX 33461457 33461763 -129138167 - AluJb SINE Alu -7 305 1 252 321 86 0 chrX 33461835 33461916 -129138014 + L2 LINE L2 3148 3235 -37 830 128 14 5 chrX 33461921 33462148 -129137782 + (TGGA)n Simple_repeat Simple_repeat 1 229 0 430 330 77 0 chrX 33463439 33463633 -129136297 + L3b LINE CR1 1109 1317 -266 327 226 31 56 chrX 33463667 33463843 -129136087 - Charlie7 DNA MER1_type -5 2607 2435 2964 6 0 0 chrX 33463843 33464155 -129135775 - AluYb8 SINE Alu -6 312 1 327 226 31 56 chrX 33464155 33464173 -129135757 - Charlie7 DNA MER1_type -177 2435 2418 224 246 0 72 chrX 33464262 33464331 -129135599 + L2 LINE L2 3203 3266 -47 447 258 18 76 chrX 33464334 33464559 -129135371 - LTR16A1 LTR ERVL -7 450 239 229 179 107 71 chrX 33465190 33465274 -129134656 + MIR SINE MIR 60 146 -62 950 205 92 54 chrX 33466115 33466354 -129133576 + MIR SINE MIR 11 258 -4 395 271 0 11 chrX 33466357 33466538 -129133392 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 397 240 19 86 chrX 33466550 33466697 -129133233 + L1MC4 LINE L1 6526 6709 -1139 360 206 56 75 chrX 33466617 33466724 -129133206 - L1MCa LINE L1 -4364 2062 1958 * 245 197 55 87 chrX 33467236 33467363 -129132567 - MLT1I LTR MaLR -33 376 254 313 283 12 64 chrX 33467736 33467909 -129132021 - MLT1K LTR MaLR -28 560 397 247 293 88 20 chrX 33467949 33468096 -129131834 - MLT1K LTR MaLR -266 322 166 978 218 35 32 chrX 33468357 33468642 -129131288 - MLT1H LTR MaLR -188 367 53 532 40 13 0 chrX 33468642 33468718 -129131212 - AluY SINE Alu -1 311 235 965 129 29 0 chrX 33468718 33468858 -129131072 - AluSq/x SINE Alu -168 144 1 347 270 11 0 chrX 33468858 33468947 -129130983 - MLT1G1 LTR MaLR -490 105 16 248 314 105 16 chrX 33470543 33470667 -129129263 - L2 LINE L2 -1 3312 3178 617 310 55 9 chrX 33471466 33471792 -129128138 + L1MC/D LINE L1 5315 5655 -2153 217 286 0 16 chrX 33472179 33472242 -129127688 + GA-rich Low_complexity Low_complexity 4 65 0 287 261 109 59 chrX 33472291 33472410 -129127520 - MIR SINE MIR -64 144 20 383 247 14 110 chrX 33472781 33473000 -129126930 - MLT1K LTR MaLR 0 588 391 762 270 50 31 chrX 33473037 33473296 -129126634 - MLT1K LTR MaLR -180 408 145 309 89 0 0 chrX 33473412 33473457 -129126473 + (TG)n Simple_repeat Simple_repeat 2 46 0 308 279 194 18 chrX 33473490 33473655 -129126275 - L1MC4a LINE L1 -1630 6178 5985 384 231 22 0 chrX 33474425 33474538 -129125392 - MIR SINE MIR -49 213 99 183 129 0 0 chrX 33475241 33475272 -129124658 + (TG)n Simple_repeat Simple_repeat 2 32 0 2474 211 40 28 chrX 33476873 33477089 -129122841 - MLT1G LTR MaLR -1 589 377 2527 150 52 5 chrX 33477089 33477496 -129122434 + MSTB LTR MaLR 1 426 0 2474 211 40 28 chrX 33477496 33477852 -129122078 - MLT1G LTR MaLR -213 377 10 398 235 34 101 chrX 33478335 33478484 -129121446 - MIR3 SINE MIR -20 188 50 206 196 36 18 chrX 33479627 33479683 -129120247 + GA-rich Low_complexity Low_complexity 2 58 0 460 220 31 76 chrX 33480439 33480600 -129119330 + MIR3 SINE MIR 44 201 -7 1158 196 17 30 chrX 33480854 33481189 -129118741 + AluJo SINE Alu 86 417 0 251 279 0 0 chrX 33481196 33481264 -129118666 - MIR SINE MIR -78 184 117 212 340 204 6 chrX 33481286 33481448 -129118482 + MIR SINE MIR 13 206 -56 210 233 50 17 chrX 33481530 33481590 -129118340 + L2 LINE L2 3207 3268 -4 1122 117 0 0 chrX 33482417 33482596 -129117334 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 547 249 115 10 chrX 33482803 33483012 -129116918 + MIR SINE MIR 5 235 -27 521 262 141 19 chrX 33483052 33483258 -129116672 + MIR SINE MIR 20 250 -12 424 272 236 16 chrX 33483586 33483777 -129116153 + MIR SINE MIR 30 262 0 1605 172 63 0 chrX 33485307 33485592 -129114338 - AluJo SINE Alu -9 303 1 215 266 16 133 chrX 33485828 33485956 -129113974 + L2 LINE L2 2908 3020 -252 441 0 0 0 chrX 33486028 33486077 -129113853 + (CA)n Simple_repeat Simple_repeat 2 50 0 475 257 154 9 chrX 33486266 33486481 -129113449 - MIR SINE MIR 0 262 21 479 207 222 0 chrX 33486634 33486769 -129113161 + MER5A DNA MER1_type 9 173 -16 1894 221 124 7 chrX 33487032 33487571 -129112359 + L1ME3A LINE L1 5569 6170 0 477 0 0 0 chrX 33487964 33488017 -129111913 + (CA)n Simple_repeat Simple_repeat 2 54 0 511 284 78 29 chrX 33488100 33488343 -129111587 - MIR SINE MIR 0 262 8 864 158 27 22 chrX 33488407 33488591 -129111339 + MER53 DNA DNA 5 189 0 256 269 25 59 chrX 33488595 33488714 -129111216 - MIR3 SINE MIR -83 125 11 197 237 13 92 chrX 33488935 33489011 -129110919 + L2 LINE L2 3132 3201 -71 1257 275 199 8 chrX 33489191 33489668 -129110262 - MLT1G1 LTR MaLR 0 595 28 2345 100 3 0 chrX 33489921 33490221 -129109709 - AluSx SINE Alu -11 301 1 496 292 23 26 chrX 33490553 33490801 -129109129 + MLT1H LTR MaLR 53 269 -140 322 262 40 16 chrX 33490867 33490993 -129108937 + MLT1I LTR MaLR 281 409 0 332 271 0 85 chrX 33491335 33491414 -129108516 + L2 LINE L2 3137 3202 -70 2204 81 54 13 chrX 33491414 33491548 -129108382 + AluSx SINE Alu 1 128 -184 2572 80 0 3 chrX 33491548 33491862 -129108068 + AluSp SINE Alu 1 313 0 2204 81 54 13 chrX 33491862 33492025 -129107905 + AluSx SINE Alu 128 310 -2 332 271 0 85 chrX 33492025 33492074 -129107856 + L2 LINE L2 3202 3254 -18 210 37 0 0 chrX 33492483 33492510 -129107420 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 236 271 144 27 chrX 33492597 33492785 -129107145 - L2 LINE L2 -872 2442 2233 1793 252 16 2 chrX 33492798 33493222 -129106708 - LTR16C LTR ERVL -11 480 51 748 188 0 0 chrX 33493301 33493434 -129106496 + FLAM_A SINE Alu 1 133 0 2238 109 3 0 chrX 33493472 33493779 -129106151 - AluSp SINE Alu 0 308 1 1483 275 129 15 chrX 33495719 33496246 -129103684 + MLT1L LTR MaLR 1 587 -28 2505 71 3 0 chrX 33496458 33496754 -129103176 - AluSp SINE Alu -16 297 1 1836 173 87 58 chrX 33496888 33497339 -129102591 + MLT1C LTR MaLR 4 467 0 1823 134 7 34 chrX 33497462 33497753 -129102177 + AluJo SINE Alu 1 283 -29 21 0 0 0 chrX 33498270 33498291 -129101639 + AT_rich Low_complexity Low_complexity 1 21 0 1495 264 41 45 chrX 33498294 33498786 -129101144 + MLT1J LTR MaLR 3 492 -19 1983 221 45 19 chrX 33499042 33499570 -129100360 + MLT1G1 LTR MaLR 1 595 0 372 103 0 0 chrX 33499833 33499891 -129100039 + (CA)n Simple_repeat Simple_repeat 2 59 0 2348 115 0 3 chrX 33500060 33500372 -129099558 - AluSx SINE Alu -1 311 1 1662 166 39 86 chrX 33500497 33500841 -129099089 + MLT1B LTR MaLR 1 325 -65 2510 67 0 0 chrX 33500841 33501138 -129098792 + AluY SINE Alu 2 298 -13 1662 166 39 86 chrX 33501138 33501202 -129098728 + MLT1B LTR MaLR 325 390 0 243 188 0 0 chrX 33501301 33501349 -129098581 + GA-rich Low_complexity Low_complexity 2 49 0 786 247 95 59 chrX 33501610 33502094 -129097836 - L2 LINE L2 -3 3310 2770 2836 209 22 57 chrX 33502155 33502939 -129096991 + L1MC4 LINE L1 7287 8042 0 2145 124 0 3 chrX 33502959 33503272 -129096658 + AluSx SINE Alu 1 312 0 201 190 17 35 chrX 33504665 33504723 -129095207 - MIR SINE MIR -69 139 83 1207 226 38 31 chrX 33504927 33505245 -129094685 - MER5C DNA MER1_type 0 324 5 2454 100 0 0 chrX 33505281 33505581 -129094349 + AluSq SINE Alu 1 300 -13 198 204 0 82 chrX 33505586 33505635 -129094295 + MIR SINE MIR 50 94 -114 548 228 158 19 chrX 33505938 33506096 -129093834 - MER5A DNA MER1_type 0 189 10 647 122 58 93 chrX 33506915 33507054 -129092876 + AluJb SINE Alu 1 134 -178 222 318 47 9 chrX 33507180 33507287 -129092643 - L2 LINE L2 -6 3307 3197 281 268 41 0 chrX 33507347 33507444 -129092486 + LTR16A LTR ERVL 91 191 -259 457 30 30 0 chrX 33508653 33508720 -129091210 + (CA)n Simple_repeat Simple_repeat 1 69 0 1648 144 8 38 chrX 33509122 33509266 -129090664 - AluJb SINE Alu -56 256 122 225 0 0 0 chrX 33509266 33509291 -129090639 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1648 144 8 38 chrX 33509291 33509410 -129090520 - AluJb SINE Alu -190 122 1 787 264 122 21 chrX 33509808 33510096 -129089834 - LTR16C LTR ERVL 0 491 175 198 246 177 46 chrX 33510522 33510652 -129089278 + MIR3 SINE MIR 34 180 -28 2649 139 39 31 chrX 33510715 33511234 -129088696 - L1MB5 LINE L1 0 6174 5652 1249 125 0 0 chrX 33511235 33511403 -129088527 - AluJb SINE Alu -10 302 135 365 140 64 12 chrX 33511403 33511574 -129088356 + (TA)n Simple_repeat Simple_repeat 1 180 0 208 137 39 0 chrX 33511605 33511656 -129088274 + (TA)n Simple_repeat Simple_repeat 1 53 0 2226 108 7 0 chrX 33511656 33511944 -129087986 - AluSq SINE Alu -21 292 3 1002 134 0 0 chrX 33511972 33512136 -129087794 + (TA)n Simple_repeat Simple_repeat 2 165 0 1993 134 3 0 chrX 33512136 33512419 -129087511 - AluSx SINE Alu -28 284 1 735 199 127 0 chrX 33512682 33512848 -129087082 + MIR SINE MIR 4 190 -72 198 258 34 0 chrX 33513677 33513736 -129086194 - MIR SINE MIR -97 165 105 349 197 16 13 chrX 33513801 33513922 -129086008 - MER5A DNA MER1_type -2 187 5 229 224 0 35 chrX 33514562 33514620 -129085310 - MIR3 SINE MIR -1 207 152 574 235 36 18 chrX 33514621 33514787 -129085143 + MER117 DNA MER1_type 3 171 -26 2125 185 41 35 chrX 33514917 33515409 -129084521 + Charlie4a DNA MER1_type 14 508 0 226 260 0 0 chrX 33515981 33516031 -129083899 - MIR3 SINE MIR -8 200 151 198 279 171 27 chrX 33516084 33516195 -129083735 - MIR SINE MIR -64 144 18 840 262 126 49 chrX 33516634 33517000 -129082930 - MLT1J2 LTR MaLR -25 425 32 2293 80 0 28 chrX 33517067 33517387 -129082543 + AluSg SINE Alu 1 312 0 479 154 135 0 chrX 33517597 33517701 -129082229 - L2 LINE L2 -1 3312 3195 1370 241 97 8 chrX 33517977 33518347 -129081583 - LTR16C LTR ERVL 0 491 89 1951 161 0 3 chrX 33518609 33518913 -129081017 + AluJb SINE Alu 1 303 -9 780 301 104 26 chrX 33518916 33519401 -129080529 + L2 LINE L2 2776 3313 0 509 196 42 42 chrX 33519827 33519967 -129079963 + MIR SINE MIR 114 252 -10 496 241 167 9 chrX 33521121 33521272 -129078658 + MER5A DNA MER1_type 3 183 -6 393 253 45 34 chrX 33522198 33522376 -129077554 - L1ME4a LINE L1 -2 6119 5940 529 226 147 74 chrX 33522482 33522672 -129077258 - MER63A DNA MER1_type -5 205 2 461 242 11 0 chrX 33522687 33522782 -129077148 + MER45 DNA AcHobo 1 96 -944 258 279 88 60 chrX 33522900 33523115 -129076815 + L2 LINE L2 2222 2442 -872 210 37 0 0 chrX 33523202 33523229 -129076701 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 1698 132 51 55 chrX 33523687 33523850 -129076080 - AluSx SINE Alu -2 310 147 1621 186 0 3 chrX 33523850 33524151 -129075779 - AluSp SINE Alu 0 313 14 1698 132 51 55 chrX 33524151 33524298 -129075632 - AluSx SINE Alu -165 147 1 668 122 0 0 chrX 33524487 33524585 -129075345 - AluS SINE Alu -214 99 2 296 164 16 0 chrX 33524586 33524647 -129075283 + MSTD LTR MaLR 327 388 -8 269 229 0 0 chrX 33524692 33524753 -129075177 + MER45 DNA AcHobo 1517 1577 -4 586 279 117 25 chrX 33524753 33525184 -129074746 + MLT1H LTR MaLR 67 590 0 2297 108 0 0 chrX 33525499 33525795 -129074135 + AluSx SINE Alu 1 296 -16 331 263 51 25 chrX 33525796 33525914 -129074016 + MER5A DNA MER1_type 66 186 -3 324 270 35 17 chrX 33525816 33525931 -129073999 - MER5A DNA MER1_type -72 117 1 * 787 259 177 10 chrX 33526365 33526670 -129073260 - LTR33A LTR ERVL -165 358 3 478 327 31 0 chrX 33526813 33526972 -129072958 + LTR16C LTR ERVL 87 250 -241 1018 272 43 76 chrX 33528259 33528723 -129071207 - MLT1J LTR MaLR -5 506 59 2345 146 3 5 chrX 33528723 33529114 -129070816 + MLT1B LTR MaLR 1 390 0 1018 272 43 76 chrX 33529114 33529160 -129070770 - MLT1J LTR MaLR -452 59 13 632 108 198 0 chrX 33529994 33530105 -129069825 - FLAM_C SINE Alu 0 133 1 534 183 58 8 chrX 33530125 33530245 -129069685 - AluJ SINE Alu -11 301 176 1287 118 0 54 chrX 33530264 33530468 -129069462 - AluJ SINE Alu -119 193 1 1871 108 39 105 chrX 33530475 33530807 -129069123 - AluSg SINE Alu 0 310 1 507 280 101 0 chrX 33530871 33531039 -129068891 + LTR50 LTR ERVL 1 185 -610 912 310 84 69 chrX 33531090 33531832 -129068098 - HAL1 LINE L1 -939 1568 816 312 177 9 17 chrX 33532003 33532069 -129067861 - MLT1A1 LTR MaLR 0 396 297 41 21 0 0 chrX 33532071 33532119 -129067811 + AT_rich Low_complexity Low_complexity 1 48 0 1952 182 0 0 chrX 33532119 33532421 -129067509 + AluJo SINE Alu 1 302 -10 1524 225 23 23 chrX 33532425 33532821 -129067109 + L1ME3A LINE L1 5771 6166 -4 1481 158 101 36 chrX 33532821 33533099 -129066831 + AluJb SINE Alu 1 296 -16 246 333 82 18 chrX 33734706 33734925 -128865005 - L2 LINE L2 -813 2501 2269 * 259 289 97 91 chrX 33734923 33735231 -128864699 + L3 LINE CR1 934 1243 -334 2315 105 3 0 chrX 33736088 33736383 -128863547 + AluSx SINE Alu 1 296 -16 1334 214 87 77 chrX 33737122 33737523 -128862407 - MLT2D LTR ERVL -8 406 2 2151 142 0 0 chrX 33737548 33737857 -128862073 - AluSx SINE Alu -3 309 1 2256 96 0 0 chrX 33738258 33738540 -128861390 - AluSx SINE Alu -17 295 14 2367 75 7 10 chrX 33738548 33738843 -128861087 + AluSq SINE Alu 1 294 -19 2195 87 26 29 chrX 33738848 33739158 -128860772 + AluSc SINE Alu 1 309 0 1044 269 51 20 chrX 33739513 33739904 -128860026 - LTR16A1 LTR ERVL 0 457 55 183 293 93 13 chrX 33740123 33740198 -128859732 - L3 LINE CR1 -405 1172 1092 2308 111 0 3 chrX 33740254 33740561 -128859369 - AluSx SINE Alu -6 306 1 1953 136 0 63 chrX 33740751 33741068 -128858862 - AluJb SINE Alu -15 297 1 840 218 50 44 chrX 33741076 33741170 -128858760 - L1MC5 LINE L1 -36 7925 7833 2015 130 33 3 chrX 33741170 33741469 -128858461 + AluJo SINE Alu 1 308 -4 840 218 50 44 chrX 33741469 33741695 -128858235 - L1MC5 LINE L1 -128 7833 7603 1316 101 0 6 chrX 33741702 33741871 -128858059 - AluSx SINE Alu -3 307 140 2217 112 3 3 chrX 33741895 33742190 -128857740 - AluSq SINE Alu -16 297 3 3824 61 32 104 chrX 33742192 33742359 -128857571 + LTR66 LTR ERVL 7 184 -426 2328 78 34 0 chrX 33742359 33742654 -128857276 + AluSc SINE Alu 4 308 -1 3824 61 32 104 chrX 33742654 33742980 -128856950 + LTR66 LTR ERVL 184 444 -166 459 0 0 0 chrX 33742980 33743031 -128856899 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3824 61 32 104 chrX 33743031 33743187 -128856743 + LTR66 LTR ERVL 444 610 0 1179 96 0 0 chrX 33743187 33743333 -128856597 - AluSx SINE Alu -166 146 1 981 204 47 50 chrX 33743337 33743603 -128856327 - L1MC5 LINE L1 -364 7597 7332 1009 149 4 115 chrX 33743603 33743767 -128856163 + MER3 DNA MER1_type 1 133 -76 2001 105 16 56 chrX 33743767 33743922 -128856008 - AluSx SINE Alu -20 292 153 2373 91 0 7 chrX 33743922 33744220 -128855710 - AluSp SINE Alu -17 296 1 2001 105 16 56 chrX 33744220 33744368 -128855562 - AluSx SINE Alu -159 153 1 1009 149 4 115 chrX 33744368 33744438 -128855492 + MER3 DNA MER1_type 133 209 0 981 204 47 50 chrX 33744438 33744462 -128855468 - L1MC5 LINE L1 -629 7332 7309 1858 66 70 4 chrX 33744462 33744704 -128855226 - AluY SINE Alu -17 294 37 981 204 47 50 chrX 33744704 33744755 -128855175 - L1MC5 LINE L1 -652 7309 7256 233 269 59 59 chrX 33744986 33745105 -128854825 - MIR3 SINE MIR -43 165 47 239 208 21 0 chrX 33745124 33745172 -128854758 - MIR SINE MIR -115 93 45 536 293 26 4 chrX 33745198 33745427 -128854503 - L1M4 LINE L1 -2261 3885 3652 715 67 0 0 chrX 33745427 33745517 -128854413 - 5S rRNA rRNA -31 90 1 259 308 35 49 chrX 33745521 33745569 -128854361 - L1M4 LINE L1 -2486 3660 3613 2245 97 33 3 chrX 33745569 33745869 -128854061 - AluSg SINE Alu -1 309 1 259 308 35 49 chrX 33745869 33745963 -128853967 - L1M4 LINE L1 -2533 3613 3520 264 273 0 0 chrX 33745967 33746022 -128853908 + polypyrimidine Low_complexity Low_complexity 3 57 0 375 317 60 27 chrX 33746047 33746230 -128853700 - L1M4 LINE L1 -2640 3506 3318 2154 128 20 0 chrX 33747062 33747359 -128852571 + AluSx SINE Alu 2 304 -8 373 163 105 0 chrX 33747372 33747458 -128852472 + L1MB3 LINE L1 5730 5824 -356 1342 118 11 0 chrX 33747459 33747637 -128852293 - AluJb SINE Alu -12 300 121 1939 144 11 3 chrX 33747673 33748020 -128851910 + L1MB3 LINE L1 5818 6167 -16 2447 93 3 0 chrX 33748023 33748334 -128851596 - AluSp SINE Alu -1 312 1 1190 115 13 0 chrX 33748337 33748493 -128851437 - AluSg/x SINE Alu -14 298 141 2269 110 0 0 chrX 33748542 33748834 -128851096 - AluSx SINE Alu -20 292 1 363 23 0 0 chrX 33749648 33749692 -128850238 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chrX 33750022 33750050 -128849880 + AT_rich Low_complexity Low_complexity 1 28 0 582 215 0 0 chrX 33750079 33750186 -128849744 - FLAM_C SINE Alu -35 108 2 327 245 21 32 chrX 33750186 33750280 -128849650 - L1ME1 LINE L1 -198 5968 5876 2095 132 3 0 chrX 33750292 33750580 -128849350 - AluSx SINE Alu -23 289 1 626 150 0 10 chrX 33750580 33750680 -128849250 - AluJb SINE Alu -177 135 37 2483 79 3 9 chrX 33750692 33751007 -128848923 - AluSq SINE Alu 0 313 1 374 119 92 73 chrX 33751023 33751055 -128848875 - L1MB8 LINE L1 0 6178 6148 2185 122 3 0 chrX 33751055 33751359 -128848571 + AluSx SINE Alu 1 305 -7 374 119 92 73 chrX 33751359 33751435 -128848495 - L1MB8 LINE L1 -30 6148 6068 1458 182 111 14 chrX 33751439 33751808 -128848122 - L1M4 LINE L1 -5457 1085 681 341 271 135 23 chrX 33751896 33752029 -128847901 + MLT1J LTR MaLR 33 180 -331 1871 146 8 35 chrX 33752041 33752417 -128847513 + pTR5 LTR ERV1 742 1107 -1331 1893 127 29 14 chrX 33752554 33752715 -128847215 - AluSx SINE Alu 0 302 134 2341 115 0 6 chrX 33752715 33753028 -128846902 - AluSx SINE Alu -1 311 1 1893 127 29 14 chrX 33753028 33753162 -128846768 - AluSx SINE Alu -168 134 3 1787 142 44 41 chrX 33753529 33753824 -128846106 + AluJo SINE Alu 3 298 -14 553 185 179 0 chrX 33754056 33754207 -128845723 + MER5A DNA MER1_type 4 181 -8 2465 97 3 0 chrX 33754531 33754840 -128845090 - AluSx SINE Alu -2 310 1 1919 131 44 14 chrX 33754840 33755137 -128844793 - AluJo SINE Alu -6 306 1 780 218 128 13 chrX 33755433 33755667 -128844263 - L1ME3A LINE L1 -20 6150 5890 2331 91 0 0 chrX 33755807 33756136 -128843794 - AluSq SINE Alu 0 329 1 2326 96 17 0 chrX 33756180 33756473 -128843457 + AluSx SINE Alu 1 298 -14 933 132 20 0 chrX 33756614 33756766 -128843164 + MER68 LTR ERV1 1 155 -407 2019 132 27 3 chrX 33756766 33757061 -128842869 - AluJo SINE Alu -10 302 1 2444 93 0 0 chrX 33757275 33757586 -128842344 + AluY SINE Alu 1 311 0 1439 130 5 5 chrX 33757612 33757819 -128842111 + AluJb SINE Alu 84 290 -22 588 230 133 6 chrX 33757819 33757984 -128841946 + HERVL LTR ERVL 2951 3136 -2518 2472 89 0 0 chrX 33758018 33758320 -128841610 + AluSx SINE Alu 9 310 -2 255 291 35 0 chrX 33758657 33758743 -128841187 + AluYb8 SINE Alu 119 207 -101 2657 56 3 0 chrX 33758769 33759075 -128840855 + AluSp SINE Alu 2 308 -5 204 125 0 0 chrX 33759082 33759114 -128840816 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2035 135 13 13 chrX 33759122 33759434 -128840496 + AluJo SINE Alu 1 312 0 2363 109 0 0 chrX 33759459 33759762 -128840168 + AluSx SINE Alu 1 303 -9 2364 136 66 11 chrX 33760402 33760844 -128839086 + L1MC1 LINE L1 5868 6333 0 277 139 47 12 chrX 33761772 33761858 -128838072 + CT-rich Low_complexity Low_complexity 2 90 0 2555 41 17 0 chrX 33762906 33763201 -128836729 + AluY SINE Alu 1 300 -11 268 141 141 113 chrX 33763336 33763425 -128836505 - L1MC5 LINE L1 -30 7931 7835 1767 132 71 25 chrX 33763425 33763705 -128836225 + AluJo SINE Alu 1 293 -19 268 141 141 113 chrX 33763705 33763757 -128836173 - L1MC5 LINE L1 -126 7835 7786 33 20 0 20 chrX 33763757 33763789 -128836141 + AT_rich Low_complexity Low_complexity 1 33 -17 2566 74 3 0 chrX 33763789 33764100 -128835830 - AluSp SINE Alu 0 313 2 33 20 0 20 chrX 33764100 33764118 -128835812 + AT_rich Low_complexity Low_complexity 33 50 0 352 215 72 25 chrX 33764142 33764263 -128835667 - MLT1H LTR MaLR -4 545 305 476 273 66 27 chrX 33764290 33764473 -128835457 - MLT1H LTR MaLR -258 291 102 2394 99 13 0 chrX 33764567 33764871 -128835059 - AluSx SINE Alu -4 308 1 192 77 0 0 chrX 33764918 33764944 -128834986 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1899 174 7 3 chrX 33764946 33765251 -128834679 - AluJo SINE Alu -6 306 1 28 29 0 0 chrX 33765263 33765298 -128834632 + AT_rich Low_complexity Low_complexity 1 35 0 2079 94 65 0 chrX 33765298 33765573 -128834357 - AluSp SINE Alu -20 293 1 2178 138 0 19 chrX 33765583 33765901 -128834029 - AluSx SINE Alu 0 312 1 258 32 0 0 chrX 33765908 33765939 -128833991 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chrX 33765938 33765958 -128833972 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 2160 92 10 44 chrX 33765958 33766107 -128833823 - AluSx SINE Alu -28 284 148 2444 92 3 0 chrX 33766107 33766413 -128833517 - AluSp SINE Alu -6 307 1 2160 92 10 44 chrX 33766413 33766557 -128833373 - AluSx SINE Alu -164 148 1 4224 126 10 27 chrX 33766564 33766843 -128833087 - L1MC1 LINE L1 -15 6318 6036 2040 156 0 6 chrX 33766843 33767157 -128832773 - AluJb SINE Alu 0 312 1 4224 126 10 27 chrX 33767157 33767578 -128832352 - L1MC1 LINE L1 -297 6036 5630 2324 98 0 3 chrX 33767661 33767957 -128831973 - AluSx SINE Alu -17 295 1 1214 146 0 0 chrX 33768078 33768256 -128831674 + AluSg/x SINE Alu 133 310 0 2544 69 3 7 chrX 33768459 33768764 -128831166 + AluSp SINE Alu 1 304 -9 2124 129 26 19 chrX 33769194 33769401 -128830529 - AluJb SINE Alu 0 312 101 1906 103 106 32 chrX 33769401 33769740 -128830190 - THE1B LTR MaLR 0 364 1 2124 129 26 19 chrX 33769740 33769842 -128830088 - AluJb SINE Alu -211 101 1 2505 60 6 19 chrX 33769849 33770164 -128829766 - AluY SINE Alu 0 311 1 194 0 39 0 chrX 33770165 33770191 -128829739 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2281 102 0 3 chrX 33770191 33770486 -128829444 - AluSx SINE Alu -18 294 1 1886 133 20 20 chrX 33770559 33770859 -128829071 - AluJo SINE Alu -12 300 1 1795 161 7 0 chrX 33770910 33771184 -128828746 + AluJb SINE Alu 1 276 -36 537 265 32 124 chrX 33771184 33771844 -128828086 + LTR38B LTR ERV1 12 610 0 2423 102 0 0 chrX 33771922 33772226 -128827704 - AluSx SINE Alu -8 304 1 2270 115 3 6 chrX 33772649 33772993 -128826937 - AluSx SINE Alu 0 343 1 3137 124 51 42 chrX 33773029 33773372 -128826558 - MER21B LTR ERV1 -1 862 511 2409 55 28 3 chrX 33773372 33773661 -128826269 + AluY SINE Alu 1 296 -15 3137 124 51 42 chrX 33773661 33773867 -128826063 - MER21B LTR ERV1 -352 511 308 2253 95 3 41 chrX 33773870 33774186 -128825744 - AluSp SINE Alu -9 304 1 362 139 0 28 chrX 33774255 33774327 -128825603 + MER21A LTR ERV1 1 70 -861 2199 118 0 7 chrX 33774373 33774702 -128825228 + AluSx SINE Alu 1 327 0 434 117 115 81 chrX 33774770 33774880 -128825050 + MER21A LTR ERV1 70 166 -541 1543 158 196 22 chrX 33774887 33775249 -128824681 - MSTA LTR MaLR 0 428 4 277 26 0 0 chrX 33775287 33775325 -128824605 + MSTB1 LTR MaLR 350 387 -45 * 295 111 0 111 chrX 33775324 33775356 -128824574 + MER39 LTR ERV1 281 304 -403 2339 97 3 3 chrX 33775356 33775656 -128824274 + AluSc SINE Alu 1 300 -9 295 111 0 111 chrX 33775656 33775686 -128824244 + MER39 LTR ERV1 304 336 -371 1656 157 50 4 chrX 33775706 33775968 -128823962 + AluJb SINE Alu 1 274 -38 186 255 0 0 chrX 33775973 33776024 -128823906 + GA-rich Low_complexity Low_complexity 2 52 0 744 88 10 78 chrX 33776024 33776216 -128823714 + (GGAAA)n Simple_repeat Simple_repeat 1 179 0 315 130 0 37 chrX 33776218 33776272 -128823658 + (GAAAA)n Simple_repeat Simple_repeat 4 55 0 2450 150 17 37 chrX 33776272 33776422 -128823508 + MER65C LTR ERV1 11 162 -299 2296 112 3 6 chrX 33776422 33776736 -128823194 - AluSq SINE Alu 0 313 1 2450 150 17 37 chrX 33776736 33777045 -128822885 + MER65C LTR ERV1 162 461 0 1297 193 15 45 chrX 33777045 33777181 -128822749 + MER21A LTR ERV1 203 329 -602 2498 88 3 0 chrX 33777181 33777487 -128822443 - AluSx SINE Alu -5 307 1 1297 193 15 45 chrX 33777487 33777615 -128822315 + MER21A LTR ERV1 329 459 -472 1646 149 0 4 chrX 33777629 33777870 -128822060 + AluJo SINE Alu 1 240 -72 450 81 68 0 chrX 33777897 33777971 -128821959 + L1MB3 LINE L1 6096 6174 -9 2404 82 7 23 chrX 33777985 33778291 -128821639 + AluSc SINE Alu 1 301 -8 874 249 185 25 chrX 33778325 33778719 -128821211 + MLT1H LTR MaLR 40 496 -53 940 110 0 8 chrX 33778719 33778846 -128821084 + AluJo SINE Alu 13 138 -174 1904 138 7 7 chrX 33778846 33779135 -128820795 + AluJo SINE Alu 13 301 -11 251 220 0 0 chrX 33779136 33779195 -128820735 + MLT1H LTR MaLR 487 545 -4 1809 93 86 32 chrX 33779314 33779593 -128820337 - AluSx SINE Alu -18 294 1 247 288 0 27 chrX 33780550 33780623 -128819307 + (CATG)n Simple_repeat Simple_repeat 1 71 0 3492 176 46 70 chrX 33780623 33780694 -128819236 - MER69 DNA AcHobo -2 2524 2453 1018 110 0 22 chrX 33780694 33780830 -128819100 + FLAM_C SINE Alu 1 133 0 3492 176 46 70 chrX 33780830 33781122 -128818808 - MER69 DNA AcHobo -73 2453 2155 2368 92 0 13 chrX 33781122 33781436 -128818494 + AluSx SINE Alu 1 310 -2 3492 176 46 70 chrX 33781436 33781964 -128817966 - MER69 DNA AcHobo -371 2155 1654 763 191 303 68 chrX 33781997 33782049 -128817881 - MER69 DNA AcHobo -1834 692 653 1855 160 3 25 chrX 33782049 33782368 -128817562 - AluJo SINE Alu 0 312 1 763 191 303 68 chrX 33782368 33782609 -128817321 - MER69 DNA AcHobo -1873 653 330 253 224 0 0 chrX 33782719 33782768 -128817162 - MER69 DNA AcHobo -2457 69 21 1878 132 14 0 chrX 33782795 33783075 -128816855 - AluSx SINE Alu -13 299 16 2558 58 3 3 chrX 33783076 33783385 -128816545 - AluSp SINE Alu -4 309 1 2206 89 7 0 chrX 33783416 33783728 -128816202 + AluSp SINE Alu 1 314 0 2139 98 0 58 chrX 33783735 33784063 -128815867 + AluSq SINE Alu 1 309 -4 1161 111 32 5 chrX 33784064 33784253 -128815677 + AluSg/x SINE Alu 117 310 0 2330 84 3 0 chrX 33785558 33785865 -128814065 + AluSx SINE Alu 1 308 0 879 127 8 8 chrX 33785877 33786011 -128813919 + AluJo SINE Alu 1 134 -178 845 82 65 80 chrX 33786022 33786205 -128813725 + L1MA2 LINE L1 5938 6127 -177 1756 143 0 39 chrX 33786205 33786491 -128813439 + AluJb SINE Alu 18 292 -20 2205 117 3 3 chrX 33786551 33786860 -128813070 - AluSx SINE Alu -3 309 1 2430 172 21 28 chrX 33786867 33787332 -128812598 - L1MB5 LINE L1 0 6174 5713 2474 86 0 0 chrX 33787791 33788095 -128811835 - AluSx SINE Alu -8 304 1 2215 108 0 16 chrX 33788766 33789082 -128810848 + AluSx SINE Alu 1 311 -1 2285 75 0 0 chrX 33789142 33789447 -128810483 + AluSg SINE Alu 1 305 0 895 143 0 0 chrX 33789508 33789634 -128810296 + AluSq/x SINE Alu 1 126 -186 2410 67 0 3 chrX 33790398 33790695 -128809235 + AluY SINE Alu 2 297 -14 2355 109 0 0 chrX 33790897 33791209 -128808721 + AluSx SINE Alu 1 312 0 211 262 0 0 chrX 33791370 33791412 -128808518 + MIR SINE MIR 21 62 -200 2478 78 10 0 chrX 33791661 33791968 -128807962 + AluSx SINE Alu 1 310 -2 227 274 98 49 chrX 33791998 33792100 -128807830 + MIR SINE MIR 80 186 -76 1892 118 4 0 chrX 33793368 33793630 -128806300 - AluSg SINE Alu -47 263 1 1136 60 0 0 chrX 33793664 33793797 -128806133 - AluSq/x SINE Alu -179 133 1 2592 77 0 0 chrX 33794040 33794373 -128805557 + AluSp SINE Alu 1 333 0 2061 80 13 67 chrX 33794516 33794829 -128805101 - AluSx SINE Alu -16 296 1 2603 47 0 0 chrX 33795155 33795453 -128804477 - AluY SINE Alu -13 298 1 2279 108 14 0 chrX 33795538 33795835 -128804095 - AluSx SINE Alu -11 301 1 2550 56 0 3 chrX 33796215 33796519 -128803411 - AluSp SINE Alu -10 303 1 2245 91 0 3 chrX 33797091 33797405 -128802525 - AluSq SINE Alu 0 313 1 2450 60 40 0 chrX 33797794 33798094 -128801836 - AluSp SINE Alu -1 312 1 2311 99 0 10 chrX 33798139 33798451 -128801479 - AluSq SINE Alu -4 309 1 2362 94 0 0 chrX 33798649 33798956 -128800974 + AluSx SINE Alu 5 311 -1 2003 77 48 11 chrX 33799025 33799321 -128800609 + AluY SINE Alu 1 306 0 2097 103 21 0 chrX 33800041 33800331 -128799599 - AluSx SINE Alu -16 296 1 225 238 0 0 chrX 33800769 33800811 -128799119 + HsTC2 DNA Tc2 1859 1900 0 2329 91 7 0 chrX 33803455 33803763 -128796167 + AluSx SINE Alu 1 310 -2 183 167 0 0 chrX 33804254 33804296 -128795634 + A-rich Low_complexity Low_complexity 1 42 0 306 0 0 0 chrX 33806067 33806101 -128793829 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 229 208 83 0 chrX 33806190 33806238 -128793692 - MARNA DNA Mariner -252 334 283 2335 86 3 13 chrX 33806571 33806875 -128793055 - AluSp SINE Alu -12 301 1 674 261 44 0 chrX 33806978 33807158 -128792772 + MER5A DNA MER1_type 2 189 0 189 94 0 0 chrX 33807963 33807995 -128791935 + (A)n Simple_repeat Simple_repeat 1 32 0 2229 116 0 0 chrX 33808098 33808401 -128791529 - AluSq SINE Alu -10 303 1 461 205 251 67 chrX 33809107 33809204 -128790726 - MIR SINE MIR -2 260 182 1954 93 100 0 chrX 33809204 33809484 -128790446 - AluY SINE Alu -3 308 1 461 205 251 67 chrX 33809484 33809606 -128790324 - MIR SINE MIR -80 182 19 1958 143 73 55 chrX 33810043 33810324 -128789606 + L1MB5 LINE L1 5768 6060 -114 2505 52 0 0 chrX 33810324 33810613 -128789317 + AluY SINE Alu 5 293 -18 1958 143 73 55 chrX 33810613 33810730 -128789200 + L1MB5 LINE L1 6060 6173 -1 279 174 23 105 chrX 33811070 33811156 -128788774 + L2 LINE L2 3234 3312 -1 736 168 15 53 chrX 33811353 33811484 -128788446 - FLAM_C SINE Alu -15 128 3 3023 201 46 8 chrX 33812148 33812759 -128787171 - MER82 DNA MER2_type -8 645 12 2240 110 3 7 chrX 33813666 33813967 -128785963 - AluSx SINE Alu -12 300 1 1720 158 17 30 chrX 33814102 33814399 -128785531 - AluJo SINE Alu -19 293 1 2321 89 3 0 chrX 33814583 33814886 -128785044 + AluSq SINE Alu 1 304 -9 2021 92 43 0 chrX 33815397 33815678 -128784252 - AluSc SINE Alu -16 293 1 311 308 37 0 chrX 33815815 33815922 -128784008 + L2 LINE L2 1752 1862 -1452 736 283 201 48 chrX 33815983 33816793 -128783137 + L2 LINE L2 2037 2970 -344 995 237 49 89 chrX 33816992 33817043 -128782887 + MER46C DNA MER2_type 1 53 -285 2382 78 0 7 chrX 33817043 33817338 -128782592 - AluSg SINE Alu -17 293 1 995 237 49 89 chrX 33817338 33817360 -128782570 + MER46C DNA MER2_type 53 74 -264 2181 83 38 3 chrX 33817360 33817648 -128782282 - AluSx SINE Alu -14 298 1 995 237 49 89 chrX 33817648 33817923 -128782007 + MER46C DNA MER2_type 74 336 -2 1787 173 20 10 chrX 33818313 33818614 -128781316 - AluJo SINE Alu -8 304 1 269 419 0 7 chrX 33818701 33818837 -128781093 - MER5A DNA MER1_type -9 180 46 1797 162 0 14 chrX 33820422 33820712 -128779218 - AluJb SINE Alu -22 290 5 2062 102 9 65 chrX 33821235 33821558 -128778372 - AluSx SINE Alu -6 306 2 445 283 151 23 chrX 33822730 33822949 -128776981 - MIR SINE MIR 0 262 16 851 62 0 18 chrX 33823833 33823946 -128775984 - L1PA6 LINE L1 -3 6151 6041 485 165 0 24 chrX 33824659 33824743 -128775187 - MER58B DNA MER1_type -1 340 259 1608 126 103 4 chrX 33824743 33825004 -128774926 - MER47A DNA MER2_type 0 366 80 831 206 67 6 chrX 33825004 33825169 -128774761 - FAM SINE Alu 0 175 1 22 0 0 0 chrX 33825819 33825841 -128774089 + AT_rich Low_complexity Low_complexity 1 22 0 6692 54 14 32 chrX 33825844 33826752 -128773178 - SVA Other Other -3 1383 492 1626 197 13 22 chrX 33827029 33827344 -128772586 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 33827359 33827382 -128772548 + (GGAAA)n Simple_repeat Simple_repeat 2 24 0 733 242 102 72 chrX 33828730 33829312 -128770618 + L1MC4 LINE L1 7302 7910 -132 2362 75 0 16 chrX 33829312 33829653 -128770277 + AluY SINE Alu 1 311 0 733 242 102 72 chrX 33829653 33829789 -128770141 + L1MC4 LINE L1 7910 8041 -1 2105 112 31 0 chrX 33829995 33830282 -128769648 + AluSx SINE Alu 1 296 -16 970 223 92 121 chrX 33830827 33830935 -128768995 + L1MC5 LINE L1 7099 7209 -752 2224 109 16 3 chrX 33830935 33831239 -128768691 + AluSx SINE Alu 1 308 -4 1926 90 33 43 chrX 33831239 33831540 -128768390 + AluSx SINE Alu 1 298 -14 970 223 92 121 chrX 33831540 33832128 -128767802 + L1MC5 LINE L1 7208 7770 -191 2419 86 6 6 chrX 33832128 33832441 -128767489 + AluSq SINE Alu 1 313 0 970 223 92 121 chrX 33832441 33832585 -128767345 + L1MC5 LINE L1 7770 7917 -44 398 266 50 58 chrX 33833263 33833402 -128766528 + MIR SINE MIR 41 178 -84 1429 159 169 0 chrX 33833448 33833744 -128766186 - MER7A DNA MER2_type -1 345 2 995 202 0 34 chrX 33833748 33833981 -128765949 + L1MB3 LINE L1 4900 5124 -1022 1259 171 95 21 chrX 33833986 33834321 -128765609 + L1MB3 LINE L1 5225 5534 -649 2326 116 0 0 chrX 33834321 33834631 -128765299 + AluSx SINE Alu 1 310 -2 1259 171 95 21 chrX 33834631 33835144 -128764786 + L1MB3 LINE L1 5534 6182 -1 2268 116 0 0 chrX 33836337 33836630 -128763300 - AluSx SINE Alu -19 293 1 1056 141 0 0 chrX 33836761 33836910 -128763020 - AluJb SINE Alu -14 298 150 202 323 73 0 chrX 33838366 33838462 -128761468 + MIR SINE MIR 108 210 -52 2224 70 18 80 chrX 33838590 33838917 -128761013 + AluSq SINE Alu 1 307 -6 2403 94 10 0 chrX 33839105 33839414 -128760516 - AluSx SINE Alu 0 312 1 1688 156 3 20 chrX 33840296 33840591 -128759339 - AluJb SINE Alu -22 290 1 1585 119 8 27 chrX 33842527 33842787 -128757143 + MER1B DNA MER1_type 85 339 0 984 210 22 0 chrX 33842802 33842983 -128756947 + MER5A DNA MER1_type 3 187 -2 2326 102 0 0 chrX 33842984 33843287 -128756643 + AluSc SINE Alu 1 303 -6 361 325 0 17 chrX 33843411 33843531 -128756399 + L2 LINE L2 3189 3306 -7 353 304 78 9 chrX 33843535 33843650 -128756280 + L2 LINE L2 3181 3303 -10 2324 93 3 0 chrX 33843744 33844046 -128755884 - AluSp SINE Alu -10 303 1 843 208 19 0 chrX 33844486 33844640 -128755290 - FRAM SINE Alu -22 154 1 1778 156 3 7 chrX 33844647 33844930 -128755000 - AluJb SINE Alu -22 290 9 840 310 89 43 chrX 33844940 33845613 -128754317 + L2 LINE L2 2590 3298 -15 258 273 0 0 chrX 33845787 33845864 -128754066 - Charlie8 DNA MER1_type 0 2417 2341 186 313 54 62 chrX 33845983 33846095 -128753835 - L2 LINE L2 -188 3084 2974 * 540 365 60 0 chrX 33846076 33846309 -128753621 - L2 LINE L2 -493 2821 2575 314 125 42 83 chrX 33846918 33846969 -128752961 - MER46C DNA MER2_type -6 332 283 2372 95 0 3 chrX 33846969 33847273 -128752657 - AluSq SINE Alu -10 303 1 314 125 42 83 chrX 33847273 33847293 -128752637 - MER46C DNA MER2_type -55 283 264 21 0 0 0 chrX 33850468 33850489 -128749441 + AT_rich Low_complexity Low_complexity 1 21 0 836 190 0 0 chrX 33850507 33850649 -128749281 - FRAM SINE Alu -39 137 1 1407 207 109 41 chrX 33850747 33851186 -128748744 + L1ME1 LINE L1 5627 6104 -62 2139 96 3 23 chrX 33851186 33851488 -128748442 + AluSx SINE Alu 1 296 -16 1407 207 109 41 chrX 33851488 33851535 -128748395 + L1ME1 LINE L1 6104 6146 -20 450 238 26 79 chrX 33852728 33852993 -128746937 - L1MC5 LINE L1 -50 7911 7661 200 222 0 19 chrX 33854121 33854175 -128745755 + A-rich Low_complexity Low_complexity 2 54 0 207 125 0 0 chrX 33854477 33854517 -128745413 + (A)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chrX 33855025 33855048 -128744882 + AT_rich Low_complexity Low_complexity 1 23 0 2348 90 0 0 chrX 33855082 33855381 -128744549 + AluSq SINE Alu 3 301 -12 31 26 0 0 chrX 33855512 33855550 -128744380 + AT_rich Low_complexity Low_complexity 1 38 0 1698 144 25 21 chrX 33855933 33856217 -128743713 - AluJb SINE Alu -14 298 14 1293 166 36 61 chrX 33856460 33856570 -128743360 + AluJo SINE Alu 37 148 -164 2322 102 0 6 chrX 33856570 33856883 -128743047 + AluSx SINE Alu 1 311 -1 1293 166 36 61 chrX 33856883 33857050 -128742880 + AluJo SINE Alu 148 307 -5 405 259 104 0 chrX 33857060 33857195 -128742735 + MIR SINE MIR 71 219 -43 193 246 0 16 chrX 33857407 33857468 -128742462 + MIR SINE MIR 160 219 -43 459 329 93 14 chrX 33857566 33857782 -128742148 - MIR SINE MIR -10 252 20 282 287 66 0 chrX 33858247 33858369 -128741561 + HAL1 LINE L1 11 140 -2367 5058 136 46 42 chrX 33858715 33859902 -128740028 + L1M2 LINE L1 4293 5466 -745 2288 93 3 13 chrX 33859922 33860234 -128739696 + AluSq SINE Alu 5 313 0 2571 214 124 31 chrX 33860243 33861273 -128738657 + L1MC4 LINE L1 6772 7897 -145 236 242 0 15 chrX 33862195 33862261 -128737669 + L1MC4 LINE L1 6463 6527 -1515 1277 74 6 0 chrX 33862261 33862423 -128737507 + AluSg/x SINE Alu 132 294 -16 1396 214 80 36 chrX 33862423 33862774 -128737156 + L1MC4 LINE L1 6527 6861 -1181 1870 157 3 20 chrX 33862774 33863080 -128736850 - AluJo SINE Alu -11 301 1 1396 214 80 36 chrX 33863080 33863324 -128736606 + L1MC4 LINE L1 6861 7093 -949 1977 117 46 0 chrX 33863324 33863606 -128736324 - AluSx SINE Alu -17 295 1 1396 214 80 36 chrX 33863606 33863932 -128735998 + L1MC4 LINE L1 7093 7647 -395 833 207 56 95 chrX 33863934 33864096 -128735834 + MER2 DNA MER2_type 1 168 -177 1924 138 80 12 chrX 33864096 33864422 -128735508 - MER7A DNA MER2_type 0 346 1 833 207 56 95 chrX 33864422 33864617 -128735313 + MER2 DNA MER2_type 168 344 -1 286 314 105 16 chrX 33864635 33864826 -128735104 + L1MC4 LINE L1 7680 7887 -155 412 279 213 15 chrX 33865038 33865579 -128734351 + HAL1 LINE L1 1016 1663 -844 317 298 118 22 chrX 33865729 33865907 -128734023 + HAL1 LINE L1 2219 2413 -94 1142 225 102 19 chrX 33865943 33866258 -128733672 - MER58B DNA MER1_type 0 341 1 1013 181 0 11 chrX 33866955 33867132 -128732798 - FRAM SINE Alu -2 174 1 1076 205 76 9 chrX 33867188 33867412 -128732518 - MER8 DNA MER2_type 0 239 1 190 350 90 50 chrX 33867578 33867678 -128732252 + L2 LINE L2 3137 3240 -32 237 329 26 0 chrX 33867957 33868033 -128731897 + L2 LINE L2 3234 3311 -2 282 180 0 33 chrX 33868460 33868521 -128731409 - Tigger4(Zombi) DNA MER2_type 0 2731 2673 226 132 0 26 chrX 33868499 33868537 -128731393 - Tigger4(Zombi) DNA MER2_type -2694 37 1 * 2162 103 20 3 chrX 33868563 33868855 -128731075 + AluSq SINE Alu 1 297 -16 25 0 0 0 chrX 33868871 33868896 -128731034 + AT_rich Low_complexity Low_complexity 1 25 0 766 169 8 0 chrX 33869044 33869174 -128730756 + FLAM_C SINE Alu 1 131 -2 1640 181 48 10 chrX 33869523 33869816 -128730114 + AluJb SINE Alu 1 304 -8 198 278 14 42 chrX 33872632 33872704 -128727226 - L2 LINE L2 0 3272 3203 1820 130 0 0 chrX 33872793 33873046 -128726884 + AluSx SINE Alu 1 253 -59 248 382 123 20 chrX 33873503 33873707 -128726223 + MIR SINE MIR 20 244 -18 2212 97 17 0 chrX 33874149 33874448 -128725482 + AluSc SINE Alu 1 304 -5 1725 149 64 4 chrX 33874568 33874849 -128725081 - AluJb SINE Alu -14 298 1 770 110 8 36 chrX 33876442 33876683 -128723247 + AluJo SINE Alu 13 305 -7 2332 92 13 0 chrX 33876683 33876989 -128722941 + AluSx SINE Alu 1 310 -2 476 209 37 105 chrX 33876992 33877183 -128722747 - L1MC4 LINE L1 -52 7990 7813 381 217 250 53 chrX 33877217 33877369 -128722561 - MER20 DNA MER1_type 0 219 38 629 234 134 19 chrX 33877395 33877664 -128722266 - L1MC4 LINE L1 -295 7747 7448 666 138 60 0 chrX 33877666 33877782 -128722148 - L1MC4 LINE L1 -697 7345 7223 213 39 0 0 chrX 33877982 33878008 -128721922 + (TA)n Simple_repeat Simple_repeat 1 26 0 411 172 137 13 chrX 33878319 33878457 -128721473 - L1MB7 LINE L1 -26 6148 5995 * 502 152 59 59 chrX 33878451 33878495 -128721435 - L1MB8 LINE L1 -204 6775 6732 2056 120 20 0 chrX 33878495 33878795 -128721135 + AluSx SINE Alu 1 306 -6 502 152 59 59 chrX 33878795 33879230 -128720700 - L1MB8 LINE L1 -247 6732 6094 * 1123 216 22 11 chrX 33879206 33879484 -128720446 - L1MB8 LINE L1 -1982 4975 4695 322 89 0 0 chrX 33879530 33879575 -128720355 + Charlie3 DNA MER1_type 37 81 -2629 * 564 78 0 13 chrX 33879574 33879651 -128720279 + Charlie3 DNA MER1_type 2631 2706 -4 1920 244 114 42 chrX 33879695 33880700 -128719230 - L1MB8 LINE L1 -4615 2344 1259 2604 300 41 32 chrX 33881336 33882272 -128717658 - L1MB8 LINE L1 -5914 945 2 754 205 76 5 chrX 33882338 33882523 -128717407 - L1MC4 LINE L1 -1025 7017 6820 181 120 0 0 chrX 33883543 33883568 -128716362 - MIR SINE MIR -26 236 212 248 283 33 0 chrX 33883571 33883631 -128716299 - MIR SINE MIR -156 106 45 193 333 133 28 chrX 33886241 33886311 -128713619 - MIR3 SINE MIR -6 202 141 2231 104 7 0 chrX 33886311 33886619 -128713311 - AluSx SINE Alu -2 310 1 193 333 133 28 chrX 33886619 33886728 -128713202 - MIR3 SINE MIR -67 141 4 2380 71 0 7 chrX 33888311 33888606 -128711324 + AluSx SINE Alu 1 293 -19 331 269 19 0 chrX 33888652 33888756 -128711174 - L1ME LINE L1 -420 5701 5596 185 184 53 0 chrX 33889426 33889464 -128710466 + MIR3 SINE MIR 164 203 -5 372 192 0 27 chrX 33890232 33890305 -128709625 + MER20 DNA MER1_type 67 137 -82 778 144 2 14 chrX 33890352 33890492 -128709438 + MSTD LTR MaLR 277 393 -3 2320 103 3 0 chrX 33890566 33890866 -128709064 + AluSx SINE Alu 3 303 -9 21 0 0 0 chrX 33891120 33891141 -128708789 + AT_rich Low_complexity Low_complexity 1 21 0 634 184 152 20 chrX 33891190 33891434 -128708496 + L1MC5 LINE L1 7452 7727 -234 376 240 72 72 chrX 33891447 33891816 -128708114 + L1ME LINE L1 5153 5516 -654 272 328 42 34 chrX 33892427 33892546 -128707384 - MER5A DNA MER1_type -9 180 61 750 257 121 52 chrX 33892655 33893060 -128706870 - L1ME3A LINE L1 -207 5963 5531 1100 110 7 0 chrX 33893943 33894097 -128705833 + AluSq SINE Alu 147 301 -12 266 222 159 8 chrX 33895412 33895538 -128704392 - MIR SINE MIR -13 249 105 755 117 25 17 chrX 33895830 33895950 -128703980 - FLAM_C SINE Alu -14 129 9 354 222 148 0 chrX 33895993 33896101 -128703829 - MER5C DNA MER1_type -200 124 1 2098 118 16 10 chrX 33898633 33898939 -128700991 - AluSq SINE Alu -5 308 1 33 0 0 0 chrX 33900727 33900760 -128699170 + AT_rich Low_complexity Low_complexity 1 33 0 2048 133 0 7 chrX 33901856 33902165 -128697765 + AluSx SINE Alu 1 307 -5 2270 78 0 0 chrX 33902387 33902668 -128697262 + AluSx SINE Alu 1 281 -31 273 234 13 13 chrX 33902719 33902796 -128697134 + HsTC2 DNA Tc2 3 79 -1819 424 309 64 60 chrX 33902834 33903099 -128696831 - L1MEd LINE L1 -5494 625 360 338 243 0 0 chrX 33903143 33903217 -128696713 + HsTC2 DNA Tc2 1824 1897 -1 210 287 53 53 chrX 33903218 33903312 -128696618 - MIR SINE MIR -160 102 9 1643 95 44 5 chrX 33904363 33904956 -128694974 + L1MA3 LINE L1 5636 6300 -5 26 50 0 0 chrX 33904960 33905000 -128694930 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrX 33905547 33905569 -128694361 + AT_rich Low_complexity Low_complexity 1 22 0 1455 157 44 68 chrX 33905569 33905714 -128694216 + AluJb SINE Alu 1 137 -175 2651 55 0 0 chrX 33905714 33906021 -128693909 + AluSq SINE Alu 1 307 -6 1455 157 44 68 chrX 33906021 33906169 -128693761 + AluJb SINE Alu 137 287 -25 35 24 0 0 chrX 33906951 33906993 -128692937 + AT_rich Low_complexity Low_complexity 1 42 0 2327 103 0 0 chrX 33907293 33907603 -128692327 + AluSx SINE Alu 3 312 0 1856 76 13 0 chrX 33907603 33907839 -128692091 + AluSc SINE Alu 71 309 0 23 0 0 0 chrX 33908026 33908049 -128691881 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 33908089 33908110 -128691820 + AT_rich Low_complexity Low_complexity 1 21 0 1837 168 30 30 chrX 33909425 33909764 -128690166 - MER2 DNA MER2_type -6 339 1 483 259 153 23 chrX 33909793 33910009 -128689921 - MIR SINE MIR -17 245 2 355 283 177 27 chrX 33910839 33911320 -128688610 - L1ME4a LINE L1 -54 6067 5515 349 220 0 22 chrX 33912476 33912567 -128687363 + L1M4 LINE L1 3034 3122 -3024 333 0 0 0 chrX 33912597 33912634 -128687296 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 360 0 0 0 chrX 33912633 33912673 -128687257 + (TG)n Simple_repeat Simple_repeat 2 41 0 462 272 88 28 chrX 33912755 33912942 -128686988 + L1M4 LINE L1 3283 3457 -2689 2181 99 0 10 chrX 33912942 33913235 -128686695 + AluSg SINE Alu 1 290 -20 462 272 88 28 chrX 33913235 33913411 -128686519 + L1M4 LINE L1 3457 3668 -2478 668 270 28 17 chrX 33913419 33913597 -128686333 - MIR SINE MIR -63 199 20 256 182 0 0 chrX 33913606 33913672 -128686258 - L1MA7 LINE L1 -2 6289 6224 2158 100 3 3 chrX 33913858 33914149 -128685781 - AluSg SINE Alu -15 295 5 2191 127 0 0 chrX 33914256 33914556 -128685374 - AluSx SINE Alu -12 300 1 2142 152 159 36 chrX 33915201 33915867 -128684063 + LTR1B LTR ERV1 37 826 0 679 207 96 0 chrX 33916038 33916173 -128683757 + MLT1B LTR MaLR 187 334 -56 553 270 22 56 chrX 33916462 33916640 -128683290 + MER5B DNA MER1_type 1 172 -6 289 236 164 68 chrX 33916812 33917032 -128682898 - MIR SINE MIR -2 260 20 2018 118 0 33 chrX 33917171 33917476 -128682454 + AluSx SINE Alu 4 298 -14 2319 78 0 3 chrX 33917519 33917813 -128682117 + AluY SINE Alu 1 293 -18 490 214 164 6 chrX 33917978 33918137 -128681793 - MIR SINE MIR -76 186 3 258 218 57 76 chrX 33918146 33918310 -128681620 + L1ME LINE L1 5391 5553 -613 1294 81 0 0 chrX 33918476 33918637 -128681293 - AluSg/x SINE Alu -19 291 131 647 165 87 24 chrX 33918958 33919085 -128680845 - AluJo SINE Alu -176 136 2 306 316 35 35 chrX 33919267 33919438 -128680492 + L2 LINE L2 1890 2060 -1254 2186 131 58 53 chrX 33919795 33920160 -128679770 + L1MB3 LINE L1 5765 6127 -56 2281 104 3 0 chrX 33920160 33920457 -128679473 + AluSx SINE Alu 1 298 -14 2219 82 61 0 chrX 33920458 33920751 -128679179 + AluY SINE Alu 1 311 0 2186 131 58 53 chrX 33920751 33920796 -128679134 + L1MB3 LINE L1 6126 6179 -4 371 324 7 34 chrX 33922577 33922725 -128677205 - L2 LINE L2 -2 3311 3168 2368 107 0 0 chrX 33923066 33923376 -128676554 - AluSg SINE Alu 0 310 1 835 130 70 32 chrX 33923381 33923536 -128676394 - Tigger2 DNA MER2_type -65 2653 2488 2086 113 10 19 chrX 33923536 33923846 -128676084 + AluSx SINE Alu 6 312 0 835 130 70 32 chrX 33923846 33923875 -128676055 - Tigger2 DNA MER2_type -230 2488 2462 4145 117 56 55 chrX 33923929 33924681 -128675249 - Tigger2 DNA MER2_type -1964 754 2 2247 93 7 0 chrX 33924818 33925120 -128674810 + AluY SINE Alu 1 304 -7 254 310 84 45 chrX 33925751 33925906 -128674024 - MIR SINE MIR -18 244 84 248 280 116 89 chrX 33926132 33926172 -128673758 + L2 LINE L2 2713 2750 -564 2391 83 3 0 chrX 33926172 33926472 -128673458 + AluSp SINE Alu 1 301 -12 248 280 116 89 chrX 33926472 33926656 -128673274 + L2 LINE L2 2750 2943 -371 248 373 109 18 chrX 33926777 33926887 -128673043 + L2 LINE L2 3126 3245 -27 1683 173 85 51 chrX 33926891 33927244 -128672686 - MLT1A1 LTR MaLR 0 365 1 405 231 322 25 chrX 33927645 33927844 -128672086 - MIR SINE MIR -1 261 4 759 181 0 0 chrX 33928085 33928201 -128671729 + FLAM_A SINE Alu 1 116 -17 3888 196 119 24 chrX 33929026 33930997 -128668933 + L1MB4 LINE L1 11 2182 -4777 1083 97 0 0 chrX 33930999 33931133 -128668797 + AluSq/x SINE Alu 2 135 -178 2377 97 3 0 chrX 33931133 33931442 -128668488 + AluSg SINE Alu 1 310 0 2353 97 3 3 chrX 33931486 33931794 -128668136 + AluSx SINE Alu 1 308 -4 3759 159 62 18 chrX 33932009 33932980 -128666950 + L1MB4 LINE L1 5789 6791 -200 1912 127 7 20 chrX 33933946 33934238 -128665692 + AluJb SINE Alu 1 288 -24 2279 103 0 3 chrX 33935223 33935524 -128664406 + AluSx SINE Alu 1 300 -12 2029 127 7 17 chrX 33935682 33935981 -128663949 - AluSx SINE Alu -16 296 1 1119 138 78 47 chrX 33936140 33936550 -128663380 - L1MB8 LINE L1 0 6178 5733 519 106 0 24 chrX 33936618 33936703 -128663227 - Alu SINE Alu -2 309 227 668 129 0 0 chrX 33936706 33936799 -128663131 + AluSq SINE Alu 141 233 -80 1500 109 0 41 chrX 33936799 33937019 -128662911 - AluSg SINE Alu -99 211 1 27 49 0 0 chrX 33937174 33937215 -128662715 + AT_rich Low_complexity Low_complexity 1 41 0 2178 108 3 0 chrX 33937374 33937661 -128662269 + AluSq SINE Alu 4 291 -22 25 0 0 0 chrX 33937661 33937686 -128662244 + AT_rich Low_complexity Low_complexity 1 25 0 748 284 70 8 chrX 33937858 33938101 -128661829 + MIR SINE MIR 5 262 0 368 163 353 13 chrX 33938221 33938374 -128661556 + L1MC5 LINE L1 7721 7925 -36 1200 146 0 0 chrX 33938435 33938600 -128661330 - AluSc SINE Alu -144 165 1 2083 214 122 42 chrX 33938720 33939073 -128660857 + L1ME3 LINE L1 5367 5690 -472 1625 174 0 56 chrX 33939073 33939394 -128660536 + AluJb SINE Alu 1 303 -9 2083 214 122 42 chrX 33939394 33939472 -128660458 + L1ME3 LINE L1 5690 5760 -402 2085 104 38 0 chrX 33939472 33939761 -128660169 + AluSg SINE Alu 1 300 -10 2083 214 122 42 chrX 33939761 33939877 -128660053 + L1ME3 LINE L1 5760 5865 -297 2373 93 3 0 chrX 33939877 33940177 -128659753 + AluSx SINE Alu 1 301 -11 2083 214 122 42 chrX 33940177 33940362 -128659568 + L1ME3 LINE L1 5865 6160 -2 2231 146 92 9 chrX 33940439 33940883 -128659047 + Charlie1b DNA MER1_type 37 517 -6 228 240 106 123 chrX 33941434 33941577 -128658353 - MIR3 SINE MIR -13 195 54 1989 140 13 3 chrX 33941577 33941884 -128658046 + AluSx SINE Alu 1 310 -2 228 240 106 123 chrX 33941884 33941919 -128658011 - MIR3 SINE MIR -154 54 20 743 140 281 6 chrX 33942784 33942955 -128656975 + MER20 DNA MER1_type 2 219 0 393 105 0 18 chrX 33943199 33943256 -128656674 + MER46A DNA MER2_type 1 56 -180 2373 73 0 16 chrX 33943257 33943560 -128656370 - AluSx SINE Alu -14 298 1 484 160 101 42 chrX 33943564 33943683 -128656247 + MER46A DNA MER2_type 104 229 -7 2300 103 3 0 chrX 33943843 33944143 -128655787 + AluSq SINE Alu 3 303 -10 1943 82 8 0 chrX 33944674 33944917 -128655013 + AluSp SINE Alu 1 245 -68 682 279 75 9 chrX 33944918 33945144 -128654786 - Tigger8 DNA MER2_type -378 288 48 1390 191 35 17 chrX 33945149 33945437 -128654493 + AluJo SINE Alu 1 293 -19 1258 163 183 44 chrX 33945452 33945790 -128654140 + MER58D DNA MER1_type 2 386 0 329 208 42 73 chrX 33946536 33946632 -128653298 + MIR3 SINE MIR 89 181 -27 273 207 69 0 chrX 33946729 33946787 -128653143 - L2 LINE L2 -8 3264 3203 241 169 0 92 chrX 33947190 33947255 -128652675 - MIR3 SINE MIR -15 193 135 297 228 0 0 chrX 33947281 33947338 -128652592 + L2 LINE L2 3256 3312 -1 1428 162 60 36 chrX 33948110 33948412 -128651518 + AluJb SINE Alu 1 309 -3 678 221 16 79 chrX 33949211 33949401 -128650529 + MER5B DNA MER1_type 1 178 0 1812 77 57 0 chrX 33950072 33950320 -128649610 + AluY SINE Alu 40 301 -10 24 0 0 0 chrX 33951805 33951829 -128648101 + GC_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 33952024 33952055 -128647875 + GC_rich Low_complexity Low_complexity 1 31 0 369 109 0 0 chrX 33952898 33952953 -128646977 + (CGG)n Simple_repeat Simple_repeat 2 56 0 239 273 13 0 chrX 33953026 33953103 -128646827 + C-rich Low_complexity Low_complexity 6 83 0 5831 159 62 12 chrX 33954777 33955555 -128644375 + L1MB4 LINE L1 4083 4821 -1359 180 0 0 0 chrX 33955555 33955575 -128644355 + (TA)n Simple_repeat Simple_repeat 2 21 0 5831 159 62 12 chrX 33955575 33956785 -128643145 + L1MB4 LINE L1 4821 6180 0 570 216 108 0 chrX 33957914 33958053 -128641877 + MER69 DNA AcHobo 1910 2063 -463 2205 126 0 0 chrX 33959350 33959660 -128640270 + AluSg SINE Alu 1 310 0 414 0 0 0 chrX 33960028 33960074 -128639856 + (TG)n Simple_repeat Simple_repeat 2 47 0 2195 92 7 23 chrX 33960079 33960383 -128639547 - AluSx SINE Alu -13 299 1 361 148 78 87 chrX 33961484 33961519 -128638411 + MER69 DNA AcHobo 2054 2088 -438 2401 73 0 13 chrX 33961519 33961822 -128638108 + AluSg SINE Alu 1 299 -11 361 148 78 87 chrX 33961822 33961885 -128638045 + MER69 DNA AcHobo 2088 2153 -373 2141 85 16 41 chrX 33961885 33962204 -128637726 + AluY SINE Alu 1 311 0 361 148 78 87 chrX 33962204 33962219 -128637711 + MER69 DNA AcHobo 2153 2167 -359 888 171 70 0 chrX 33962225 33962412 -128637518 + MER69 DNA AcHobo 2327 2526 0 1146 177 129 16 chrX 33962770 33963018 -128636912 + AluSg SINE Alu 21 296 -14 2270 106 0 25 chrX 33963022 33963343 -128636587 + AluSq SINE Alu 1 313 0 28 0 0 0 chrX 33963545 33963573 -128636357 + AT_rich Low_complexity Low_complexity 1 28 0 2376 98 0 3 chrX 33964519 33964826 -128635104 + AluSq SINE Alu 1 306 -7 2446 143 96 67 chrX 33964826 33965187 -128634743 + L1MCa LINE L1 1887 2236 -4320 2015 152 0 10 chrX 33965187 33965497 -128634433 + AluJb SINE Alu 1 307 -5 2446 143 96 67 chrX 33965497 33965787 -128634143 + L1MCa LINE L1 2236 2605 -3951 1031 171 0 0 chrX 33965787 33965963 -128633967 + AluJb SINE Alu 134 309 -3 1878 81 100 8 chrX 33966001 33966283 -128633647 - AluSx SINE Alu 0 306 1 247 186 0 0 chrX 33966334 33966377 -128633553 - MIR SINE MIR -30 232 190 624 269 58 24 chrX 33966380 33966588 -128633342 - MIR SINE MIR -45 217 3 213 163 0 23 chrX 33966658 33966687 -128633243 + (TTA)n Simple_repeat Simple_repeat 3 32 -12 581 179 95 48 chrX 33966687 33966855 -128633075 - MER104 DNA MER2_type 0 180 5 213 163 0 23 chrX 33966855 33966868 -128633062 + (TTA)n Simple_repeat Simple_repeat 32 44 0 899 248 232 3 chrX 33966895 33967214 -128632716 + L2 LINE L2 2203 2594 -720 1000 211 65 80 chrX 33967215 33967614 -128632316 + MLT1J1 LTR MaLR 2 394 -52 2426 85 0 0 chrX 33967887 33968181 -128631749 + AluSg SINE Alu 1 294 -16 2741 172 17 2 chrX 33968187 33968717 -128631213 + L1PA10 LINE L1 4826 5363 -783 945 166 0 0 chrX 33968731 33968882 -128631048 + L1PA10 LINE L1 5998 6148 -20 210 37 0 0 chrX 33968884 33968911 -128631019 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 611 60 0 0 chrX 33968912 33968996 -128630934 + L1PA15 LINE L1 5357 5440 -725 990 76 0 0 chrX 33969048 33969166 -128630764 + AluSg SINE Alu 1 118 -192 4574 131 22 11 chrX 33969166 33969189 -128630741 + L1PA15 LINE L1 5415 5436 -729 2403 72 0 33 chrX 33969189 33969496 -128630434 + AluSg SINE Alu 1 297 -13 4574 131 22 11 chrX 33969496 33970213 -128629717 + L1PA15 LINE L1 5436 6163 -2 567 271 79 11 chrX 33970308 33970485 -128629445 + REP3 LTR ERV 1 189 -373 410 214 117 28 chrX 33970874 33971019 -128628911 + L2 LINE L2 2808 2965 -349 788 243 6 0 chrX 33971624 33971797 -128628133 - FAM SINE Alu 0 175 2 2280 104 13 3 chrX 33971811 33972120 -128627810 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 33972130 33972154 -128627776 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2198 109 3 7 chrX 33972154 33972437 -128627493 - AluSx SINE Alu -28 284 1 2144 131 0 0 chrX 33972455 33972753 -128627177 - AluSx SINE Alu -14 298 1 2424 82 7 7 chrX 33972810 33973115 -128626815 - AluSp SINE Alu -8 305 1 443 201 8 44 chrX 33973119 33973270 -128626660 - L1ME3 LINE L1 0 6162 6017 1173 233 124 79 chrX 33973270 33974254 -128625676 - L1MC5 LINE L1 -786 7175 6163 2211 99 0 7 chrX 33974273 33974556 -128625374 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 33974556 33974581 -128625349 + (TA)n Simple_repeat Simple_repeat 2 27 0 1724 168 106 117 chrX 33974620 33975149 -128624781 - MLT1F1 LTR MaLR -2 565 18 502 309 60 73 chrX 33975213 33975658 -128624272 - L1MC4a LINE L1 -1761 6047 5609 2309 88 3 3 chrX 33975658 33975953 -128623977 - AluSg SINE Alu -15 295 1 502 309 60 73 chrX 33975953 33976053 -128623877 - L1MC4a LINE L1 -2199 5609 5509 688 80 0 0 chrX 33976098 33976186 -128623744 - AluSg1 SINE Alu -220 89 2 465 231 8 30 chrX 33976239 33976373 -128623557 - L1ME3 LINE L1 0 6162 6032 2097 114 0 0 chrX 33976430 33976710 -128623220 - AluSx SINE Alu -32 280 1 833 328 65 36 chrX 33976710 33977454 -128622476 - L1MC4a LINE L1 -881 6927 6163 2273 79 0 10 chrX 33977469 33977760 -128622170 - AluSx SINE Alu -24 288 1 1604 171 103 109 chrX 33977790 33978325 -128621605 - MLT1F1 LTR MaLR 0 595 18 564 303 65 68 chrX 33978389 33978990 -128620940 - L1MC4a LINE L1 -313 5808 5455 1873 110 0 4 chrX 33979397 33979643 -128620287 - AluSg SINE Alu -65 245 1 1809 139 10 42 chrX 33979644 33979977 -128619953 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 33980193 33980224 -128619706 + AT_rich Low_complexity Low_complexity 1 31 0 2374 71 3 10 chrX 33980224 33980520 -128619410 - AluSp SINE Alu -19 294 1 2060 97 0 72 chrX 33980741 33981062 -128618868 + AluSg1 SINE Alu 1 298 -11 969 121 7 7 chrX 33981069 33981218 -128618712 - FRAM SINE Alu -6 170 22 2157 105 14 0 chrX 33981265 33981551 -128618379 + AluSg SINE Alu 2 291 -19 300 279 100 38 chrX 33981561 33981850 -128618080 + L1MC/D LINE L1 5533 5840 -281 310 221 74 0 chrX 33981962 33982076 -128617854 + MLT1J LTR MaLR 104 288 -327 1258 244 98 15 chrX 33982262 33982598 -128617332 + LTR16A LTR ERVL 87 450 0 2129 113 61 0 chrX 33982738 33983031 -128616899 + AluSx SINE Alu 1 311 -1 626 249 131 22 chrX 33983042 33983497 -128616433 + L1M4 LINE L1 5010 5517 -657 2387 84 0 0 chrX 33983742 33984038 -128615892 - AluSp SINE Alu -17 296 1 33 73 0 0 chrX 33984205 33984273 -128615657 + AT_rich Low_complexity Low_complexity 1 68 0 743 181 0 0 chrX 33984273 33984389 -128615541 - FLAM_C SINE Alu -25 118 3 2224 89 7 0 chrX 33984417 33984729 -128615201 - AluSp SINE Alu 0 314 1 215 227 0 0 chrX 33984842 33984886 -128615044 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 3572 214 66 26 chrX 33984999 33985349 -128614581 - L1ME2 LINE L1 -16 6217 5882 1944 198 116 34 chrX 33985349 33985671 -128614259 + MER34 LTR ERV1 1 380 -162 2242 103 0 29 chrX 33985671 33985981 -128613949 - AluSq SINE Alu -12 301 1 1944 198 116 34 chrX 33985981 33986159 -128613771 + MER34 LTR ERV1 380 542 0 3572 214 66 26 chrX 33986159 33986286 -128613644 - L1ME2 LINE L1 -351 5882 5761 2293 101 0 31 chrX 33986286 33986604 -128613326 - AluSg SINE Alu 0 310 3 3572 214 66 26 chrX 33986604 33987063 -128612867 - L1ME2 LINE L1 -472 5761 5322 198 0 0 0 chrX 33987063 33987085 -128612845 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1967 131 3 3 chrX 33987088 33987370 -128612560 - AluSx SINE Alu -30 282 1 754 199 0 0 chrX 33987374 33987505 -128612425 - FLAM_C SINE Alu -2 131 1 3572 214 66 26 chrX 33987505 33988005 -128611925 - L1ME2 LINE L1 -914 5319 4709 2069 98 0 59 chrX 33988015 33988321 -128611609 + AluSg SINE Alu 1 288 -22 2213 117 0 3 chrX 33988444 33988751 -128611179 - AluSq SINE Alu -7 306 1 2366 34 41 31 chrX 33988780 33989074 -128610856 - AluY SINE Alu -14 297 1 10081 177 84 44 chrX 33989211 33989294 -128610636 + L1MDa LINE L1 16 94 -6446 2136 133 0 0 chrX 33989294 33989588 -128610342 - AluSx SINE Alu -15 297 4 10081 177 84 44 chrX 33989588 33991854 -128608076 + L1MDa LINE L1 94 2459 -4081 2126 109 0 26 chrX 33992632 33992944 -128606986 - AluSx SINE Alu -8 304 1 884 243 183 44 chrX 33993118 33993316 -128606614 - L1ME2 LINE L1 -1559 4656 4487 2640 30 0 3 chrX 33993316 33993611 -128606319 + AluY SINE Alu 1 294 -17 884 243 183 44 chrX 33993611 33994099 -128605831 - L1ME2 LINE L1 -1728 4487 3874 2242 213 25 45 chrX 33994437 33994686 -128605244 - L1ME2 LINE L1 -2824 3391 3138 761 159 0 16 chrX 33994686 33994812 -128605118 - FLAM_C SINE Alu -9 124 1 2242 213 25 45 chrX 33994812 33994860 -128605070 - L1ME2 LINE L1 -3077 3138 3091 966 182 0 29 chrX 33994860 33995030 -128604900 - FRAM SINE Alu -1 165 1 2242 213 25 45 chrX 33995030 33995421 -128604509 - L1ME2 LINE L1 -3124 3091 2716 2118 174 10 12 chrX 33995425 33995839 -128604091 - L1MA4 LINE L1 -3 6297 5885 2087 88 0 4 chrX 33995905 33996178 -128603752 - L1MA4 LINE L1 -426 5878 5607 1984 145 3 0 chrX 33996179 33996476 -128603454 - AluSq SINE Alu -15 298 1 2820 155 27 16 chrX 33996478 33996993 -128602937 - L1MA4 LINE L1 -781 5365 4845 802 119 24 16 chrX 33996993 33997119 -128602811 + FLAM_C SINE Alu 1 127 -16 27 0 0 0 chrX 33997119 33997146 -128602784 + AT_rich Low_complexity Low_complexity 1 27 0 740 136 0 0 chrX 33997153 33997271 -128602659 - L1MA4 LINE L1 -1287 4859 4742 793 225 7 0 chrX 33997273 33997455 -128602475 - FRAM SINE Alu 0 185 3 2877 233 56 74 chrX 33997466 33997894 -128602036 - L1ME2 LINE L1 -4305 2091 1657 2038 117 53 0 chrX 33997894 33998177 -128601753 - AluSg SINE Alu -12 298 1 2877 233 56 74 chrX 33998177 33998379 -128601551 - L1ME2 LINE L1 -4739 1657 1453 2177 118 0 3 chrX 33998379 33998675 -128601255 + AluSq SINE Alu 1 295 -18 2877 233 56 74 chrX 33998675 33998687 -128601243 - L1ME2 LINE L1 -4943 1453 1442 2168 130 0 0 chrX 33998687 33998994 -128600936 + AluSx SINE Alu 1 307 -5 2877 233 56 74 chrX 33998994 33999256 -128600674 - L1ME2 LINE L1 -4954 1442 1177 2292 107 3 3 chrX 33999256 33999564 -128600366 - AluSc SINE Alu -1 308 1 2877 233 56 74 chrX 33999564 33999722 -128600208 - L1ME2 LINE L1 -5219 1177 1018 2066 136 10 0 chrX 33999722 34000024 -128599906 - AluSx SINE Alu -7 305 1 2877 233 56 74 chrX 34000024 34000115 -128599815 - L1ME2 LINE L1 -5378 1018 956 2129 122 0 0 chrX 34000115 34000414 -128599516 - AluSx SINE Alu 0 303 5 2877 233 56 74 chrX 34000414 34000530 -128599400 - L1ME2 LINE L1 -5440 956 839 2250 105 0 0 chrX 34000538 34000844 -128599086 - AluSx SINE Alu 0 306 1 1440 159 4 4 chrX 34000867 34001100 -128598830 - AluJo SINE Alu -11 301 69 855 295 9 24 chrX 34001102 34001434 -128598496 - L1ME2 LINE L1 -5571 825 499 2246 108 0 13 chrX 34001480 34001616 -128598314 + AluSx SINE Alu 1 137 -175 2303 109 3 0 chrX 34001616 34001918 -128598012 + AluSp SINE Alu 1 303 -10 2246 108 0 13 chrX 34001918 34002086 -128597844 + AluSx SINE Alu 137 301 -11 23 33 0 0 chrX 34002707 34002737 -128597193 + AT_rich Low_complexity Low_complexity 1 30 0 3123 54 10 0 chrX 34002858 34003249 -128596681 - L1PA7 LINE L1 -2 6152 5758 2192 126 0 0 chrX 34003252 34003546 -128596384 - AluSg SINE Alu -16 294 1 1759 176 0 16 chrX 34003546 34003858 -128596072 - AluJo SINE Alu -4 308 2 3754 82 53 121 chrX 34004479 34005159 -128594771 + MER51A LTR ERV1 1 634 0 456 228 20 10 chrX 34005216 34005317 -128594613 + MIR SINE MIR 33 134 -128 801 168 58 0 chrX 34005331 34005486 -128594444 + MER5A DNA MER1_type 26 189 0 2185 87 7 30 chrX 34005616 34005916 -128594014 + AluSq SINE Alu 1 293 -20 967 59 8 0 chrX 34005928 34006047 -128593883 + AluSq/x SINE Alu 1 120 -192 1397 171 0 17 chrX 34006215 34006454 -128593476 - AluJb SINE Alu -1 311 77 1970 134 3 36 chrX 34007268 34007573 -128592357 - AluSx SINE Alu -15 297 3 231 215 0 31 chrX 34007685 34007750 -128592180 - L1MC4 LINE L1 -1340 6702 6640 2443 97 0 0 chrX 34007752 34008062 -128591868 - AluSg SINE Alu 0 310 1 908 252 125 9 chrX 34008086 34008407 -128591523 - L1MC4 LINE L1 -1851 5957 5600 1263 121 0 0 chrX 34008409 34008575 -128591355 + AluSx SINE Alu 1 166 -146 1571 123 4 4 chrX 34008575 34008802 -128591128 + AluSg/x SINE Alu 70 296 -14 408 207 42 28 chrX 34008814 34008937 -128590993 - MLT1H LTR MaLR -374 181 69 294 289 44 0 chrX 34008951 34009041 -128590889 - L1MC4 LINE L1 -2192 5616 5523 21 82 0 0 chrX 34009209 34009258 -128590672 + AT_rich Low_complexity Low_complexity 1 49 0 1983 78 0 0 chrX 34009420 34009665 -128590265 - AluY SINE Alu -21 290 46 * 2068 91 4 0 chrX 34009664 34009929 -128590001 - AluSx SINE Alu -46 266 1 2302 91 3 7 chrX 34010315 34010612 -128589318 - AluSp SINE Alu -17 296 1 180 0 0 0 chrX 34011298 34011318 -128588612 + (TGG)n Simple_repeat Simple_repeat 2 21 0 377 256 22 0 chrX 34011338 34011428 -128588502 - MER5A DNA MER1_type -85 104 13 729 212 98 5 chrX 34011636 34011820 -128588110 + L1MC4a LINE L1 5255 5455 -2353 2147 165 42 12 chrX 34011826 34012257 -128587673 + LTR56 LTR ERV1 2 445 0 643 274 189 44 chrX 34012304 34012946 -128586984 + L1MC4a LINE L1 5614 6348 -1460 1974 127 7 16 chrX 34012955 34013263 -128586667 + AluJo SINE Alu 1 305 -7 235 152 0 0 chrX 34013263 34013296 -128586634 - LTR41 LTR ERVL -323 450 418 1009 195 80 73 chrX 34013318 34013467 -128586463 - LTR41 LTR ERVL -472 301 148 2177 132 3 0 chrX 34013467 34013771 -128586159 - AluSx SINE Alu -7 305 1 1009 195 80 73 chrX 34013771 34013908 -128586022 - LTR41 LTR ERVL -625 148 13 1295 197 10 65 chrX 34013916 34014226 -128585704 + L1MC5 LINE L1 6680 6972 -989 479 167 12 0 chrX 34014229 34014313 -128585617 - FLAM_A SINE Alu -33 109 25 194 0 39 0 chrX 34014351 34014377 -128585553 + (CAA)n Simple_repeat Simple_repeat 2 28 0 638 148 7 67 chrX 34014377 34014512 -128585418 + L1MC5 LINE L1 7022 7148 -813 1812 187 78 3 chrX 34014588 34014946 -128584984 + Charlie1a DNA MER1_type 1 385 -1070 675 177 0 32 chrX 34014947 34015071 -128584859 + FLAM_A SINE Alu 1 120 -22 4163 148 48 10 chrX 34015081 34015884 -128584046 + Charlie1a DNA MER1_type 377 1296 -159 878 148 44 0 chrX 34015888 34016023 -128583907 - FRAM SINE Alu -30 146 6 284 86 0 0 chrX 34016040 34016075 -128583855 - U2 snRNA snRNA -153 35 1 2043 99 60 0 chrX 34016085 34016369 -128583561 - AluSc SINE Alu -7 302 2 1909 149 94 18 chrX 34016373 34016843 -128583087 + Charlie1 DNA MER1_type 2161 2731 -30 2443 93 0 0 chrX 34016850 34017152 -128582778 - AluSx SINE Alu -8 304 3 960 182 19 0 chrX 34017174 34017333 -128582597 - AluJo SINE Alu -30 282 121 714 179 20 13 chrX 34017333 34017484 -128582446 + Charlie1 DNA MER1_type 2605 2756 -5 1223 207 22 59 chrX 34017485 34017842 -128582088 + L1MC5 LINE L1 7153 7496 -465 2390 43 0 14 chrX 34017932 34018109 -128581821 - AluSx SINE Alu 0 310 137 2090 118 0 40 chrX 34018109 34018430 -128581500 - AluSg SINE Alu -2 308 1 2390 43 0 14 chrX 34018430 34018558 -128581372 - AluSx SINE Alu -173 137 9 323 279 56 9 chrX 34018750 34018888 -128581042 + MIR SINE MIR 3 144 -64 1745 146 10 48 chrX 34019683 34019972 -128579958 - AluJo SINE Alu 0 411 136 2441 75 3 0 chrX 34019972 34020267 -128579663 - AluSp SINE Alu -17 296 1 1745 146 10 48 chrX 34020267 34020399 -128579531 - AluJo SINE Alu -275 136 1 481 304 41 0 chrX 34020476 34020647 -128579283 + MIR SINE MIR 14 191 -71 550 283 64 47 chrX 34020705 34020831 -128579099 + LTR33 LTR ERVL 2 124 -397 1579 142 0 47 chrX 34020831 34021085 -128578845 + AluJo SINE Alu 40 281 -31 550 283 64 47 chrX 34021085 34021282 -128578648 + LTR33 LTR ERVL 124 370 -151 2320 109 0 0 chrX 34021535 34021838 -128578092 + AluSx SINE Alu 1 303 -9 651 26 0 0 chrX 34022132 34022209 -128577721 + (TA)n Simple_repeat Simple_repeat 1 77 0 2329 79 0 0 chrX 34022212 34022490 -128577440 - AluSc SINE Alu -31 278 1 1266 139 74 19 chrX 34022500 34022715 -128577215 - AluJb SINE Alu -1 311 85 789 111 22 44 chrX 34023128 34023263 -128576667 - FLAM_C SINE Alu 0 143 12 1409 118 142 45 chrX 34024179 34024425 -128575505 - AluJb SINE Alu -19 293 24 1665 160 7 10 chrX 34024437 34024730 -128575200 - AluJo SINE Alu -4 308 17 1275 95 0 0 chrX 34024760 34024918 -128575012 - AluSc SINE Alu -13 296 139 2440 66 3 3 chrX 34024959 34025261 -128574669 + AluSc SINE Alu 1 302 -7 808 166 24 41 chrX 34025316 34025485 -128574445 + MLT1C LTR MaLR 19 184 -321 1107 145 12 0 chrX 34025510 34025682 -128574248 + FRAM SINE Alu 1 173 -3 835 211 188 5 chrX 34025738 34025946 -128573984 + MLT1C LTR MaLR 217 462 -5 232 255 85 57 chrX 34026146 34026252 -128573678 + MLT1K LTR MaLR 156 264 -324 1106 164 5 43 chrX 34026792 34027000 -128572930 - AluJo SINE Alu -26 286 87 1758 156 84 22 chrX 34027532 34027853 -128572077 + MER7A DNA MER2_type 8 346 0 707 184 31 92 chrX 34027853 34028015 -128571915 - MER2 DNA MER2_type -193 152 1 1543 222 80 36 chrX 34028017 34028343 -128571587 - L1MC4 LINE L1 -395 7647 7337 2004 117 46 0 chrX 34028343 34028625 -128571305 + AluSx SINE Alu 1 295 -17 1543 222 80 36 chrX 34028625 34028869 -128571061 - L1MC4 LINE L1 -705 7337 7105 1854 157 3 20 chrX 34028869 34029175 -128570755 + AluJo SINE Alu 1 301 -11 1543 222 80 36 chrX 34029175 34029523 -128570407 - L1MC4 LINE L1 -937 7105 6530 855 188 6 0 chrX 34029525 34029685 -128570245 - AluSg/x SINE Alu -17 292 132 226 279 0 15 chrX 34029685 34029753 -128570177 - L1MC4 LINE L1 -1515 6527 6461 1099 254 83 26 chrX 34030670 34031138 -128568792 - L1MC4 LINE L1 -145 7897 7403 285 160 43 106 chrX 34031943 34031978 -128567952 + MER69 DNA AcHobo 2054 2090 -436 2378 76 0 13 chrX 34031978 34032281 -128567649 + AluSg SINE Alu 1 299 -11 285 160 43 106 chrX 34032281 34032339 -128567591 + MER69 DNA AcHobo 2090 2141 -385 2111 75 16 43 chrX 34032344 34032649 -128567281 + AluY SINE Alu 1 297 -14 4599 129 22 3 chrX 34032649 34033366 -128566564 + L1PA15 LINE L1 5433 6163 -2 567 271 79 11 chrX 34033461 34033638 -128566292 + REP3 LTR ERV 1 189 -373 419 212 110 27 chrX 34034027 34034173 -128565757 + L2 LINE L2 2808 2965 -349 788 243 6 0 chrX 34034778 34034951 -128564979 - FAM SINE Alu 0 175 2 2230 110 13 3 chrX 34034965 34035274 -128564656 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 34035284 34035308 -128564622 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2212 105 3 7 chrX 34035308 34035591 -128564339 - AluSx SINE Alu -28 284 1 2072 134 3 7 chrX 34035601 34035906 -128564024 - AluSx SINE Alu -8 304 1 2392 82 7 10 chrX 34035963 34036266 -128563664 - AluSp SINE Alu -11 302 1 443 201 8 44 chrX 34036270 34036421 -128563509 - L1ME3 LINE L1 0 6162 6017 1173 233 124 79 chrX 34036421 34037405 -128562525 - L1MC5 LINE L1 -786 7175 6163 2211 99 0 7 chrX 34037424 34037707 -128562223 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 34037707 34037732 -128562198 + (TA)n Simple_repeat Simple_repeat 2 27 0 1710 170 106 117 chrX 34037771 34038300 -128561630 - MLT1F1 LTR MaLR -2 565 18 502 309 60 73 chrX 34038364 34038809 -128561121 - L1MC4a LINE L1 -1761 6047 5609 2296 92 3 3 chrX 34038809 34039104 -128560826 - AluSg SINE Alu -15 295 1 502 309 60 73 chrX 34039104 34039204 -128560726 - L1MC4a LINE L1 -2199 5609 5509 688 80 0 0 chrX 34039249 34039337 -128560593 - AluSg SINE Alu -221 89 2 465 231 8 30 chrX 34039390 34039524 -128560406 - L1ME3 LINE L1 0 6162 6032 2097 114 0 0 chrX 34039581 34039861 -128560069 - AluSx SINE Alu -32 280 1 833 327 62 36 chrX 34039861 34040607 -128559323 - L1MC4a LINE L1 -881 6927 6163 2273 79 0 10 chrX 34040622 34040913 -128559017 - AluSx SINE Alu -24 288 1 1616 171 103 109 chrX 34040943 34041478 -128558452 - MLT1F1 LTR MaLR 0 595 18 564 303 65 68 chrX 34041542 34042143 -128557787 - L1MC4a LINE L1 -313 5808 5455 1850 114 0 4 chrX 34042550 34042796 -128557134 - AluSg SINE Alu -65 245 1 1809 139 10 42 chrX 34042797 34043130 -128556800 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 34043346 34043377 -128556553 + AT_rich Low_complexity Low_complexity 1 31 0 2506 64 0 7 chrX 34043377 34043673 -128556257 - AluSq SINE Alu -19 294 1 1218 240 101 21 chrX 34043813 34044150 -128555780 - LTR16A LTR ERVL 0 450 87 310 221 74 0 chrX 34044336 34044450 -128555480 - MLT1J LTR MaLR -327 288 104 300 279 100 38 chrX 34044562 34044851 -128555079 - L1ME3 LINE L1 -281 5840 5533 2157 105 14 0 chrX 34044861 34045147 -128554783 - AluSg SINE Alu -19 291 2 975 120 7 7 chrX 34045194 34045344 -128554586 + FRAM SINE Alu 22 171 -5 422 94 0 0 chrX 34045347 34045411 -128554519 - Alu SINE Alu -9 301 238 408 193 0 36 chrX 34045542 34045625 -128554305 - MLT1H LTR MaLR -375 174 95 294 289 44 0 chrX 34045639 34045729 -128554201 - L1ME3 LINE L1 -2192 5616 5523 21 82 0 0 chrX 34045897 34045946 -128553984 + AT_rich Low_complexity Low_complexity 1 49 0 2343 83 0 0 chrX 34046108 34046398 -128553532 - AluY SINE Alu -21 290 1 1000 211 65 80 chrX 34046671 34047070 -128552860 - MLT1J1 LTR MaLR -52 394 2 899 248 232 3 chrX 34047071 34047390 -128552540 - L2 LINE L2 -720 2594 2203 213 163 0 23 chrX 34047417 34047430 -128552500 + (TAA)n Simple_repeat Simple_repeat 3 15 -29 581 179 95 48 chrX 34047430 34047598 -128552332 + MER104 DNA MER2_type 5 180 0 213 163 0 23 chrX 34047598 34047627 -128552303 + (TAA)n Simple_repeat Simple_repeat 15 44 0 624 269 58 24 chrX 34047697 34047905 -128552025 + MIR SINE MIR 3 217 -45 247 186 0 0 chrX 34047908 34047951 -128551979 + MIR SINE MIR 190 232 -30 2220 88 0 17 chrX 34048002 34048299 -128551631 + AluSx SINE Alu 1 292 -20 385 251 68 12 chrX 34048312 34048475 -128551455 + L1M4 LINE L1 3497 3668 -2478 597 270 28 17 chrX 34048483 34048661 -128551269 - MIR SINE MIR -63 199 20 274 191 0 0 chrX 34048668 34048736 -128551194 - L1MA7 LINE L1 0 6291 6224 2176 103 3 3 chrX 34048922 34049213 -128550717 - AluSg SINE Alu -15 295 5 2227 127 0 0 chrX 34049320 34049620 -128550310 - AluSx SINE Alu -12 300 1 973 185 52 30 chrX 34050265 34050533 -128549397 + LTR1B LTR ERV1 37 347 -479 1859 213 87 0 chrX 34250546 34250936 -128348994 + MER69 DNA AcHobo 647 1070 -1456 249 221 44 0 chrX 34250971 34251039 -128348891 + (TA)n Simple_repeat Simple_repeat 1 71 0 953 214 94 18 chrX 34251045 34251321 -128348609 + MER69 DNA AcHobo 2223 2519 -7 201 74 0 0 chrX 34251608 34251635 -128348295 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 808 303 17 14 chrX 34253127 34253424 -128346506 + LTR16A LTR ERVL 153 450 0 354 222 22 0 chrX 34253854 34253944 -128345986 - MER33 DNA MER1_type 0 363 272 21 57 0 0 chrX 34254252 34254287 -128345643 + GC_rich Low_complexity Low_complexity 1 35 0 2095 120 0 0 chrX 34255124 34255433 -128344497 + AluSx SINE Alu 1 309 -3 295 253 101 39 chrX 34256032 34256210 -128343720 + L3 LINE CR1 1098 1286 -291 222 263 40 30 chrX 34256895 34256994 -128342936 - L2 LINE L2 -1099 2215 2116 300 200 0 0 chrX 34256994 34257054 -128342876 + Charlie7 DNA MER1_type 35 94 -2518 1631 121 85 21 chrX 34257056 34257337 -128342593 - AluJb SINE Alu -13 299 1 1814 133 55 7 chrX 34257343 34257490 -128342440 - AluSx SINE Alu -5 307 168 1614 119 44 8 chrX 34257490 34257742 -128342188 - AluSp SINE Alu -44 269 9 1814 133 55 7 chrX 34257742 34257887 -128342043 - AluSx SINE Alu -144 168 1 942 127 0 0 chrX 34257889 34258023 -128341907 - AluSq/x SINE Alu -179 134 1 589 92 163 0 chrX 34258041 34258139 -128341791 - L1MD3 LINE L1 -340 7655 7542 320 298 75 25 chrX 34258348 34258509 -128341421 - L2 LINE L2 -1231 2083 1915 1167 112 0 0 chrX 34258907 34259086 -128340844 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1944 102 3 11 chrX 34259086 34259369 -128340561 - AluSq SINE Alu -32 281 1 1201 276 68 40 chrX 34259373 34259844 -128340086 - HERV16 LTR ERVL -2660 2336 1853 367 226 191 9 chrX 34259846 34259961 -128339969 + LTR16C LTR ERVL 194 329 -162 2329 113 3 42 chrX 34259978 34260308 -128339622 + L1MA5 LINE L1 5757 6072 -228 2416 99 0 43 chrX 34260308 34260660 -128339270 + MER1B DNA MER1_type 1 337 0 2329 113 3 42 chrX 34260660 34260708 -128339222 + L1MA5 LINE L1 6072 6120 -180 1901 130 20 7 chrX 34260708 34261007 -128338923 - AluJb SINE Alu -9 303 1 398 298 57 14 chrX 34261215 34261356 -128338574 + MIR SINE MIR 8 154 -108 859 236 75 8 chrX 34261514 34261747 -128338183 - L1MD3 LINE L1 -179 7816 7454 1852 125 53 23 chrX 34261747 34262050 -128337880 + AluJb SINE Alu 1 312 0 859 236 75 8 chrX 34262050 34262064 -128337866 - L1MD3 LINE L1 -541 7454 7442 295 265 53 53 chrX 34262070 34262115 -128337815 + L1MC4a LINE L1 5911 5955 -1853 1178 164 103 0 chrX 34262115 34262329 -128337601 - MER46A DNA MER2_type 0 236 1 295 265 53 53 chrX 34262329 34262434 -128337496 + L1MC4a LINE L1 5954 6061 -1747 796 156 8 118 chrX 34262476 34262714 -128337216 + L1MC4 LINE L1 6930 7141 -901 329 268 73 0 chrX 34262714 34262796 -128337134 - L1MC4 LINE L1 -1340 6702 6615 243 228 22 43 chrX 34262799 34262891 -128337039 + L1MC4 LINE L1 6614 6703 -1339 233 172 35 0 chrX 34262894 34262952 -128336978 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 306 261 0 11 chrX 34262964 34263052 -128336878 + L1MC4 LINE L1 7185 7271 -771 1822 125 0 104 chrX 34263052 34263251 -128336679 - AluJo SINE Alu 0 302 151 1806 157 3 10 chrX 34263251 34263564 -128336366 - AluJb SINE Alu -1 311 1 1822 125 0 104 chrX 34263564 34263701 -128336229 - AluJo SINE Alu -151 151 1 2464 213 58 85 chrX 34264326 34264626 -128335304 + L1MC4 LINE L1 7161 7467 -575 2052 167 11 19 chrX 34264626 34264992 -128334938 - MLT1A1 LTR MaLR 0 365 3 2464 213 58 85 chrX 34264992 34265076 -128334854 + L1MC4 LINE L1 7467 7552 -490 2023 77 43 47 chrX 34265076 34265375 -128334555 + AluSx SINE Alu 1 298 -14 2464 213 58 85 chrX 34265375 34265657 -128334273 + L1MC4 LINE L1 7552 7840 -202 2228 86 3 16 chrX 34265657 34265971 -128333959 + AluSx SINE Alu 1 310 -2 2464 213 58 85 chrX 34265971 34266036 -128333894 + L1MC4 LINE L1 7840 7905 -137 1701 165 27 0 chrX 34266036 34266333 -128333597 + AluJb SINE Alu 1 305 -7 2464 213 58 85 chrX 34266333 34266504 -128333426 + L1MC4 LINE L1 7905 8042 0 789 169 50 30 chrX 34267367 34267517 -128332413 + L1MB2 LINE L1 5967 6123 -48 2106 77 57 17 chrX 34267517 34267815 -128332115 + AluSg SINE Alu 1 310 0 789 169 50 30 chrX 34267815 34267865 -128332065 + L1MB2 LINE L1 6123 6171 0 22 0 0 0 chrX 34267865 34267887 -128332043 + AT_rich Low_complexity Low_complexity 1 22 0 506 133 0 0 chrX 34267934 34268009 -128331921 - Alu SINE Alu -9 302 228 895 181 0 12 chrX 34268011 34268177 -128331753 - AluJo SINE Alu -148 164 1 348 24 0 0 chrX 34268688 34268729 -128331201 + (TG)n Simple_repeat Simple_repeat 1 41 0 613 275 154 51 chrX 34269352 34269708 -128330222 - MLT1K LTR MaLR -116 472 80 1291 293 74 24 chrX 34269730 34270228 -128329702 + MLT1G1 LTR MaLR 73 595 0 728 149 8 30 chrX 34270239 34270373 -128329557 + MSTC LTR MaLR 1 131 -297 5234 333 43 34 chrX 34270382 34270396 -128329534 + ERVL LTR ERVL 2355 2367 -3397 2246 99 0 0 chrX 34270396 34270698 -128329232 + AluSg1 SINE Alu 1 302 -7 5234 333 43 34 chrX 34270698 34271387 -128328543 + ERVL LTR ERVL 2367 3048 -2716 1859 155 16 0 chrX 34271387 34271691 -128328239 - AluJo SINE Alu -3 309 1 5234 333 43 34 chrX 34271691 34272421 -128327509 + ERVL LTR ERVL 3048 3769 -1995 2747 71 16 27 chrX 34272421 34272789 -128327141 + THE1B LTR MaLR 1 364 0 5234 333 43 34 chrX 34272789 34274002 -128325928 + ERVL LTR ERVL 3769 5029 -735 943 267 87 76 chrX 34274451 34274900 -128325030 + LTR16A LTR ERVL 1 454 -3 8214 160 58 24 chrX 34275118 34276647 -128323283 - MER45R DNA AcHobo 0 1581 1 1131 258 21 14 chrX 34276703 34276990 -128322940 - LTR16C LTR ERVL 0 491 203 393 70 0 0 chrX 34278327 34278384 -128321546 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1234 173 4 17 chrX 34278387 34278624 -128321306 - AluJo SINE Alu -30 282 49 1628 141 4 18 chrX 34278688 34278965 -128320965 - AluJb SINE Alu -39 273 1 408 321 157 24 chrX 34279030 34279481 -128320449 - L1ME4a LINE L1 -75 6046 5536 183 236 135 81 chrX 34279828 34279976 -128319954 + L2 LINE L2 2925 3080 -192 1812 182 63 37 chrX 34280036 34280465 -128319465 - LTR47B LTR ERVL -3 440 1 2154 111 0 7 chrX 34280482 34280788 -128319142 - AluSx SINE Alu -8 304 1 2044 122 7 0 chrX 34281395 34281690 -128318240 + AluJb SINE Alu 1 297 -15 196 319 14 0 chrX 34281694 34281766 -128318164 + MIR SINE MIR 136 208 -54 385 224 33 125 chrX 34282782 34282934 -128316996 - MLT1H LTR MaLR -169 380 243 914 129 7 7 chrX 34282934 34283081 -128316849 + AluJb SINE Alu 136 282 -30 380 249 115 46 chrX 34283113 34283330 -128316600 - MLT1H LTR MaLR -296 253 22 1651 143 17 17 chrX 34283374 34283668 -128316262 + AluJb SINE Alu 3 296 -16 741 129 88 82 chrX 34283824 34283892 -128316038 - L1MA9 LINE L1 -5 6307 6241 2120 65 76 7 chrX 34283892 34284183 -128315747 - AluY SINE Alu 0 311 1 741 129 88 82 chrX 34284183 34284285 -128315645 - L1MA9 LINE L1 -71 6241 6136 2298 92 0 0 chrX 34284298 34284593 -128315337 + AluSx SINE Alu 1 295 -17 813 156 0 8 chrX 34284595 34284717 -128315213 - AluJo/FLAM SINE Alu -190 122 2 2226 107 0 3 chrX 34285501 34285809 -128314121 + AluSp SINE Alu 1 307 -6 2053 100 29 0 chrX 34286108 34286387 -128313543 + AluSx SINE Alu 3 289 -23 1687 134 38 22 chrX 34286446 34286507 -128313423 - MER33 DNA MER1_type -2262 323 264 1898 128 17 3 chrX 34286507 34286795 -128313135 - AluJb SINE Alu -19 293 2 1687 134 38 22 chrX 34286795 34287047 -128312883 - MER33 DNA MER1_type -2321 264 5 295 318 11 0 chrX 34287260 34287348 -128312582 + L1MC/D LINE L1 5494 5582 -2226 876 139 23 0 chrX 34287388 34287517 -128312413 + FLAM_C SINE Alu 2 133 0 666 299 126 29 chrX 34288973 34289354 -128310576 - LTR16A LTR ERVL 0 450 33 233 307 68 11 chrX 34289372 34289460 -128310470 - MIR SINE MIR -168 94 2 249 156 44 0 chrX 34289796 34289841 -128310089 + L1P4 LINE L1 5861 5907 -259 1746 127 79 7 chrX 34289842 34290134 -128309796 + AluSq SINE Alu 1 313 0 1972 118 3 7 chrX 34290141 34290438 -128309492 + L1PA15 LINE L1 5870 6165 0 2058 103 0 25 chrX 34290605 34290940 -128308990 - AluSx SINE Alu 0 327 1 1622 142 3 112 chrX 34291028 34291048 -128308882 - AluJb SINE Alu 0 302 281 357 24 0 0 chrX 34291048 34291090 -128308840 + (TG)n Simple_repeat Simple_repeat 1 42 0 1622 142 3 112 chrX 34291090 34291407 -128308523 - AluJb SINE Alu -21 281 2 926 256 23 5 chrX 34291423 34291642 -128308288 - MIR SINE MIR -14 248 26 649 286 21 5 chrX 34292096 34292285 -128307645 + MIR3 SINE MIR 10 201 -7 1843 156 0 20 chrX 34292812 34293113 -128306817 - AluJb SINE Alu -16 296 2 204 323 16 0 chrX 34293827 34293889 -128306041 + MIR SINE MIR 88 150 -112 802 235 59 40 chrX 34294790 34295062 -128304868 - LTR33 LTR ERVL -7 514 238 2512 10 10 0 chrX 34295314 34295602 -128304328 - AluYa5 SINE Alu -3 308 18 812 123 0 0 chrX 34295650 34295772 -128304158 - AluSg/x SINE Alu -1 308 187 1406 88 0 0 chrX 34295981 34296173 -128303757 + AluSg/x SINE Alu 121 312 0 266 271 115 0 chrX 34296174 34296270 -128303660 + L1MC4a LINE L1 7166 7272 -536 22 0 0 0 chrX 34296272 34296294 -128303636 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chrX 34296749 34296801 -128303129 + AT_rich Low_complexity Low_complexity 1 52 0 906 151 7 0 chrX 34297371 34297564 -128302366 + AluSg/x SINE Alu 135 328 0 2085 109 3 7 chrX 34297763 34298065 -128301865 - AluSx SINE Alu -11 301 1 21 0 0 0 chrX 34298131 34298152 -128301778 + AT_rich Low_complexity Low_complexity 1 21 0 968 284 119 12 chrX 34298779 34299265 -128300665 + L1MC4 LINE L1 7346 7883 -159 1586 204 227 14 chrX 34301952 34302392 -128297538 - MLT1F LTR MaLR -8 534 1 26 50 0 0 chrX 34303622 34303662 -128296268 + AT_rich Low_complexity Low_complexity 1 40 0 2105 103 0 0 chrX 34303890 34304182 -128295748 - AluSx SINE Alu -20 292 1 322 264 70 23 chrX 34304184 34304313 -128295617 - L1MC4a LINE L1 -1904 5904 5770 199 292 0 0 chrX 34304553 34304601 -128295329 + L2 LINE L2 3262 3309 -4 1732 142 46 4 chrX 34305711 34305992 -128293938 - AluJo SINE Alu -17 295 3 2142 86 0 20 chrX 34306295 34306597 -128293333 - AluSx SINE Alu -3 309 14 2035 109 3 13 chrX 34306829 34307132 -128292798 - AluJb SINE Alu -12 300 1 1263 216 122 10 chrX 34307135 34307431 -128292499 - MLT1D LTR MaLR -176 329 1 808 267 20 40 chrX 34307509 34307547 -128292383 - LTR16C LTR ERVL -3 488 451 1600 141 48 4 chrX 34307547 34307846 -128292084 + AluJo SINE Alu 1 311 0 808 267 20 40 chrX 34307846 34308053 -128291877 - LTR16C LTR ERVL -40 451 247 * 1063 238 36 8 chrX 34308050 34308298 -128291632 - MLT1C LTR MaLR -14 453 199 2111 102 3 3 chrX 34308324 34308628 -128291302 - AluSq SINE Alu -9 304 1 26 0 0 0 chrX 34308630 34308656 -128291274 + AT_rich Low_complexity Low_complexity 1 26 0 2443 94 126 5 chrX 34308819 34309200 -128290730 + MSTA LTR MaLR 1 427 -1 2052 108 0 34 chrX 34309259 34309582 -128290348 - AluSx SINE Alu 0 312 1 571 247 110 22 chrX 34309706 34309888 -128290042 - MLT1C LTR MaLR -307 198 1 346 269 87 40 chrX 34310943 34311092 -128288838 + MLT1H LTR MaLR 138 293 -256 239 228 105 0 chrX 34311147 34311204 -128288726 - LTR16C LTR ERVL -107 384 322 1899 152 9 40 chrX 34311370 34311718 -128288212 - MER1B DNA MER1_type 0 337 1 1066 152 0 0 chrX 34311730 34311894 -128288036 - AluJb SINE Alu -14 298 135 1946 139 3 3 chrX 34312276 34312577 -128287353 + AluSq SINE Alu 1 301 -12 2178 131 33 38 chrX 34313094 34313460 -128286470 - THE1B LTR MaLR 0 364 1 447 310 0 22 chrX 34313731 34313915 -128286015 + (TG)n Simple_repeat Simple_repeat 1 180 0 1148 265 84 11 chrX 34314294 34314675 -128285255 + LTR16C LTR ERVL 81 489 -2 289 200 57 14 chrX 34315021 34315091 -128284839 + L2 LINE L2 3193 3265 -7 1603 92 176 8 chrX 34315775 34316034 -128283896 - AluSg SINE Alu 0 303 5 629 194 97 29 chrX 34316441 34316616 -128283314 + LTR16C LTR ERVL 298 484 -7 2097 117 0 0 chrX 34316760 34317058 -128282872 - AluSx SINE Alu -14 298 1 237 183 174 18 chrX 34317915 34318002 -128281928 - MIR SINE MIR -44 218 116 1832 259 88 4 chrX 34318426 34318928 -128281002 - MLT1H1 LTR MaLR 0 555 12 243 0 0 0 chrX 34319729 34319756 -128280174 + (CA)n Simple_repeat Simple_repeat 1 27 0 1793 146 0 53 chrX 34320013 34320212 -128279718 - AluJb SINE Alu -8 304 127 2077 122 3 0 chrX 34320212 34320516 -128279414 + AluSx SINE Alu 1 305 -7 1793 146 0 53 chrX 34320516 34320637 -128279293 - AluJb SINE Alu -185 127 1 1664 213 141 62 chrX 34320640 34320772 -128279158 + MLT1G1 LTR MaLR 53 173 -422 2070 209 77 62 chrX 34320772 34321384 -128278546 - MLT1E3 LTR MaLR 0 624 4 1664 213 141 62 chrX 34321384 34321753 -128278177 + MLT1G1 LTR MaLR 173 594 -1 2093 132 0 0 chrX 34322180 34322490 -128277440 - AluSx SINE Alu -2 310 1 533 188 31 31 chrX 34322602 34322730 -128277200 + AluSq/x SINE Alu 2 129 -184 355 177 0 16 chrX 34323103 34323188 -128276742 + Alu SINE Alu 225 308 0 2091 98 0 0 chrX 34323204 34323480 -128276450 + AluSx SINE Alu 5 280 -32 1716 142 35 7 chrX 34323501 34323790 -128276140 + AluJo SINE Alu 1 297 -15 645 118 59 88 chrX 34324955 34325091 -128274839 + FLAM_A SINE Alu 1 132 -1 385 270 145 29 chrX 34326579 34326754 -128273176 + L1ME3 LINE L1 5508 5708 -456 2264 91 13 0 chrX 34326756 34327094 -128272836 + AluSq SINE Alu 1 342 0 632 258 6 0 chrX 34327094 34327253 -128272677 + LTR16C LTR ERVL 332 491 0 786 272 54 66 chrX 34327266 34327689 -128272241 - L3b LINE CR1 -27 1556 1139 1102 240 92 43 chrX 34328488 34328834 -128271096 + L1ME3 LINE L1 5734 6096 -66 2036 109 37 3 chrX 34328842 34329136 -128270794 + AluSx SINE Alu 1 304 -8 5826 76 11 22 chrX 34329142 34329425 -128270505 + L1PB2 LINE L1 5321 5606 -545 2179 104 0 0 chrX 34329425 34329722 -128270208 - AluY SINE Alu -14 297 1 5826 76 11 22 chrX 34329722 34330280 -128269650 + L1PB2 LINE L1 5606 6148 -3 24 115 0 0 chrX 34330281 34330403 -128269527 + AT_rich Low_complexity Low_complexity 1 122 0 2104 112 7 0 chrX 34330403 34330697 -128269233 + AluSx SINE Alu 1 296 -16 1021 241 51 19 chrX 34330697 34330954 -128268976 - MLT1E3 LTR MaLR -210 414 150 664 99 18 9 chrX 34330955 34331066 -128268864 + (TTCC)n Simple_repeat Simple_repeat 2 113 0 1414 172 104 0 chrX 34331070 34331349 -128268581 - AluJb SINE Alu -4 308 1 2096 116 3 0 chrX 34331376 34331670 -128268260 + AluSx SINE Alu 1 295 -17 833 174 0 0 chrX 34331690 34331822 -128268108 - MLT1E3 LTR MaLR -522 132 1 370 167 17 0 chrX 34332120 34332180 -128267750 - U7 snRNA snRNA -1 62 2 1523 143 21 21 chrX 34332216 34332503 -128267427 + L1MB2 LINE L1 5883 6169 -2 1566 190 7 10 chrX 34332511 34332801 -128267129 + AluJb SINE Alu 1 289 -23 2399 145 3 3 chrX 34333447 34333812 -128266118 + MLT1A1 LTR MaLR 1 365 0 260 138 46 62 chrX 34333823 34333888 -128266042 + LTR50 LTR ERVL 727 790 -5 260 256 47 23 chrX 34334124 34334210 -128265720 + MLT1L LTR MaLR 1 88 -527 727 278 88 48 chrX 34334243 34334643 -128265287 + MLT1L LTR MaLR 200 615 0 194 287 213 7 chrX 34334743 34334893 -128265037 + L2 LINE L2 1488 1668 -1646 272 265 15 91 chrX 34335274 34335406 -128264524 + L2 LINE L2 1644 1765 -1549 307 202 34 22 chrX 34335909 34335998 -128263932 + L1ME3A LINE L1 5877 5966 -204 1899 111 94 26 chrX 34336134 34336485 -128263445 + THE1C LTR MaLR 1 375 0 25 65 0 0 chrX 34336488 34336534 -128263396 + AT_rich Low_complexity Low_complexity 1 46 0 265 269 51 39 chrX 34336732 34336810 -128263120 - L2 LINE L2 -545 2769 2691 1076 141 17 0 chrX 34336813 34336990 -128262940 + AluJo SINE Alu 122 301 -11 424 168 99 20 chrX 34337397 34337498 -128262432 - L1MB8 LINE L1 -46 6132 6024 2151 134 0 6 chrX 34337498 34337812 -128262118 + AluSx SINE Alu 1 312 0 437 258 106 8 chrX 34337860 34337992 -128261938 - L1MEd LINE L1 -5673 446 302 472 193 171 101 chrX 34338010 34338065 -128261865 - L1MEd LINE L1 -5874 245 195 2288 84 0 3 chrX 34338065 34338363 -128261567 - AluSg SINE Alu -13 297 1 472 193 171 101 chrX 34338363 34338421 -128261509 - L1MEd LINE L1 -5924 195 143 2248 100 0 0 chrX 34338421 34338732 -128261198 - AluSx SINE Alu -1 311 1 472 193 171 101 chrX 34338732 34338845 -128261085 - L1MEd LINE L1 -5976 143 2 207 289 0 0 chrX 34339141 34339193 -128260737 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 659 211 0 30 chrX 34339417 34339550 -128260380 - FLAM_A SINE Alu -13 129 1 636 128 27 54 chrX 34340016 34340165 -128259765 - L1MA8 LINE L1 0 6291 6147 1017 95 12 35 chrX 34340584 34340753 -128259177 + L1MB3 LINE L1 6011 6175 -8 795 147 22 29 chrX 34342900 34343036 -128256894 + AluJo SINE Alu 2 136 -176 26 93 0 0 chrX 34343290 34343365 -128256565 + AT_rich Low_complexity Low_complexity 1 75 0 608 240 133 5 chrX 34344098 34344294 -128255636 - L1ME3 LINE L1 0 6162 5942 2158 101 0 3 chrX 34344545 34344841 -128255089 - AluSx SINE Alu -17 295 1 523 239 80 52 chrX 34345717 34346006 -128253924 - L1MEd LINE L1 -3000 3129 2833 490 213 60 105 chrX 34346004 34346319 -128253611 - HAL1 LINE L1 -133 2374 2074 * 225 267 126 15 chrX 34346334 34346469 -128253461 - HAL1 LINE L1 -1027 1480 1331 1427 131 0 0 chrX 34346514 34346751 -128253179 - L1MA7 LINE L1 0 6291 6055 2159 122 55 50 chrX 34346751 34346921 -128253009 + L1MA7 LINE L1 5618 5786 -505 2081 116 0 28 chrX 34346921 34347241 -128252689 + AluSx SINE Alu 1 311 -1 2159 122 55 50 chrX 34347241 34347472 -128252458 + L1MA7 LINE L1 5786 6021 -270 1968 129 3 0 chrX 34347477 34347771 -128252159 - AluSx SINE Alu -17 295 1 305 317 18 18 chrX 34347781 34347948 -128251982 - L1MEd LINE L1 -3303 2826 2660 268 234 108 19 chrX 34348010 34348168 -128251762 + L1M4 LINE L1 2795 2966 -3180 875 118 15 37 chrX 34348228 34348364 -128251566 - FLAM_C SINE Alu 0 133 1 309 305 15 46 chrX 34348754 34348951 -128250979 - L1MEd LINE L1 -5917 202 12 21 0 0 0 chrX 34349345 34349366 -128250564 + AT_rich Low_complexity Low_complexity 1 21 0 1590 184 4 0 chrX 34350059 34350337 -128249593 + AluJb SINE Alu 1 279 -33 216 0 0 0 chrX 34350342 34350366 -128249564 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1493 148 16 59 chrX 34350381 34350684 -128249246 + AluJo SINE Alu 1 290 -22 825 137 30 8 chrX 34351353 34351484 -128248446 - AluJo SINE Alu -176 136 3 267 178 22 0 chrX 34351967 34352012 -128247918 + MER57A LTR ERV1 291 336 -67 792 171 28 74 chrX 34352855 34353031 -128246899 - AluJo SINE Alu -22 290 123 2097 117 0 0 chrX 34353450 34353749 -128246181 - AluSx SINE Alu -13 299 1 430 265 61 117 chrX 34353917 34354181 -128245749 - L3 LINE CR1 -7 1570 1322 568 202 34 8 chrX 34354493 34354612 -128245318 + L2 LINE L2 3192 3313 0 380 272 55 55 chrX 34354631 34354848 -128245082 + L2 LINE L2 1626 1842 -1472 782 232 11 11 chrX 34354861 34355038 -128244892 - AluSg/x SINE Alu -9 301 125 826 174 45 6 chrX 34355627 34355805 -128244125 - MER53 DNA DNA -4 185 1 747 179 0 0 chrX 34356500 34356617 -128243313 + FLAM_C SINE Alu 1 117 -16 2269 87 0 0 chrX 34356938 34357236 -128242694 - AluSq SINE Alu -14 299 2 21 57 0 0 chrX 34357238 34357273 -128242657 + AT_rich Low_complexity Low_complexity 1 35 0 213 400 27 9 chrX 34357756 34357866 -128242064 - MIR SINE MIR -60 148 37 1684 171 27 34 chrX 34358287 34358660 -128241270 + L1MC3 LINE L1 7179 7687 -308 2026 131 0 3 chrX 34358660 34358957 -128240973 + AluSx SINE Alu 1 296 -16 1086 159 0 0 chrX 34358957 34359133 -128240797 + AluJb SINE Alu 134 309 -3 230 236 57 89 chrX 34359208 34359331 -128240599 + L1ME2 LINE L1 5963 6081 -83 2312 95 0 0 chrX 34360104 34360408 -128239522 - AluSx SINE Alu -8 304 1 1848 82 0 0 chrX 34360794 34361071 -128238859 - AluSx SINE Alu 0 331 55 3613 119 18 18 chrX 34361087 34361587 -128238343 - L1MB3 LINE L1 -2 6181 5679 2040 125 0 32 chrX 34361587 34361900 -128238030 + AluSx SINE Alu 1 303 -9 3613 119 18 18 chrX 34361900 34361968 -128237962 - L1MB3 LINE L1 -503 5680 5613 2364 158 21 3 chrX 34361979 34362359 -128237571 - MSTD LTR MaLR -9 387 1 847 152 0 14 chrX 34362359 34362504 -128237426 - L1MB3 LINE L1 -565 5618 5476 236 122 0 0 chrX 34362523 34362572 -128237358 - L1MB3 LINE L1 -676 5495 5447 228 182 0 0 chrX 34362675 34362719 -128237211 + T-rich Low_complexity Low_complexity 2 45 0 1520 117 120 15 chrX 34362797 34363063 -128236867 - AluSg SINE Alu -16 294 1 1922 69 138 0 chrX 34363066 34363327 -128236603 - AluSq SINE Alu -6 297 1 805 120 0 38 chrX 34363332 34363465 -128236465 - FLAM_C SINE Alu -5 128 1 805 206 11 22 chrX 34363642 34363822 -128236108 + L1ME3 LINE L1 5950 6127 -35 306 132 0 0 chrX 34364201 34364254 -128235676 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 4248 111 34 2 chrX 34364332 34364947 -128234983 + MER41B LTR ERV1 1 635 0 824 167 71 6 chrX 34365956 34366124 -128233806 - L1MC3 LINE L1 -8 7777 7599 1224 149 0 0 chrX 34366124 34366319 -128233611 - AluSg/x SINE Alu -11 301 107 1278 199 26 132 chrX 34366319 34366878 -128233052 - MLT1G1 LTR MaLR -78 477 1 23 33 0 0 chrX 34366987 34367017 -128232913 + AT_rich Low_complexity Low_complexity 1 30 0 2141 117 0 13 chrX 34367084 34367400 -128232530 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 34367495 34367518 -128232412 + AT_rich Low_complexity Low_complexity 1 23 0 785 170 0 30 chrX 34367576 34367711 -128232219 + FLAM_C SINE Alu 3 133 0 272 298 0 0 chrX 34368427 34368511 -128231419 - L1MC/D LINE L1 -2026 5782 5699 210 37 0 0 chrX 34368573 34368600 -128231330 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1958 115 4 0 chrX 34368603 34368881 -128231049 - AluSx SINE Alu -33 279 1 2259 100 0 3 chrX 34369783 34370094 -128229836 - AluSq SINE Alu -3 310 1 603 255 152 41 chrX 34370288 34370310 -128229620 + L1MC4a LINE L1 5687 5705 -2103 1934 141 70 6 chrX 34370310 34370637 -128229293 + MER7A DNA MER2_type 1 346 0 603 255 152 41 chrX 34370637 34371049 -128228881 + L1MC4a LINE L1 5705 6169 -1639 2038 124 0 0 chrX 34371056 34371346 -128228584 + AluSx SINE Alu 1 290 -22 1817 119 7 20 chrX 34371748 34372042 -128227888 - AluSq SINE Alu -23 290 1 1942 134 7 0 chrX 34372322 34372613 -128227317 + AluJo SINE Alu 3 295 -17 1850 129 24 14 chrX 34372616 34372911 -128227019 + AluSx SINE Alu 1 298 -14 738 233 70 73 chrX 34372920 34373207 -128226723 + MLT1G LTR MaLR 110 395 -195 463 315 99 20 chrX 34373218 34373466 -128226464 + L1M4 LINE L1 2644 2920 -3226 697 144 63 0 chrX 34373466 34373577 -128226353 + AluJ SINE Alu 1 118 -184 463 315 99 20 chrX 34373577 34373620 -128226310 + L1M4 LINE L1 2920 2958 -3188 2125 108 16 0 chrX 34373668 34373973 -128225957 + AluSx SINE Alu 1 310 -2 1079 153 58 2 chrX 34374012 34374254 -128225676 + AluJb SINE Alu 1 308 -4 979 174 0 11 chrX 34374535 34374550 -128225380 - AluJb SINE Alu 0 312 298 2316 93 0 3 chrX 34374550 34374860 -128225070 - AluSq SINE Alu -4 309 1 979 174 0 11 chrX 34374860 34375022 -128224908 - AluJb SINE Alu -14 298 137 2312 89 0 0 chrX 34375442 34375746 -128224184 + AluSx SINE Alu 1 304 -8 1674 107 34 4 chrX 34375800 34376062 -128223868 + AluSx SINE Alu 3 272 -40 604 164 0 0 chrX 34376123 34376227 -128223703 - AluSp SINE Alu -7 306 203 1089 99 13 0 chrX 34376232 34376384 -128223546 - AluSp SINE Alu -158 155 2 2197 107 0 22 chrX 34376533 34376852 -128223078 - AluSx SINE Alu 0 312 1 254 330 10 31 chrX 34376938 34377035 -128222895 - MIR SINE MIR -58 204 110 241 182 36 36 chrX 34377277 34377332 -128222598 - MLT1K LTR MaLR -411 177 123 559 214 38 30 chrX 34377397 34377528 -128222402 - FLAM_C SINE Alu -1 132 1 715 216 16 42 chrX 34377639 34377680 -128222250 + MLT1C LTR MaLR 1 42 -425 568 69 0 92 chrX 34377680 34377767 -128222163 + MADE1 DNA Mariner 1 79 -1 715 216 16 42 chrX 34377767 34377974 -128221956 + MLT1C LTR MaLR 42 328 -139 481 209 16 107 chrX 34477976 34478049 -128121881 - L1ME1 LINE L1 -167 5999 6038 1176 181 14 14 chrX 34478049 34478264 -128121666 + MER58C DNA MER1_type 1 215 0 481 209 16 107 chrX 34478264 34478402 -128121528 - L1ME1 LINE L1 -127 6039 5890 1108 178 108 11 chrX 34478402 34478671 -128121259 - AluSx SINE Alu -6 296 2 2095 97 3 62 chrX 34478675 34478843 -128121087 - AluSx SINE Alu -11 301 159 2121 81 3 50 chrX 34478843 34479140 -128120790 - AluSg SINE Alu -13 297 15 2095 97 3 62 chrX 34479140 34479291 -128120639 - AluSx SINE Alu -153 159 1 1647 186 26 26 chrX 34479291 34479636 -128120294 - L1MD2 LINE L1 -399 5960 5616 1639 84 33 0 chrX 34480968 34481183 -128118747 + AluSg/x SINE Alu 85 306 -6 2212 114 3 0 chrX 34482418 34482717 -128117213 + AluSx SINE Alu 1 300 -12 494 248 136 10 chrX 34482725 34482931 -128116999 + LTR16C LTR ERVL 1 232 -259 248 0 31 0 chrX 34482931 34482963 -128116967 + (TG)n Simple_repeat Simple_repeat 1 33 0 2304 95 3 0 chrX 34483094 34483404 -128116526 - AluSx SINE Alu 0 311 1 2494 138 15 15 chrX 34483413 34483796 -128116134 + MER57A LTR ERV1 1 386 -17 2113 143 3 3 chrX 34483796 34484103 -128115827 - AluSx SINE Alu -5 307 1 2494 138 15 15 chrX 34484103 34484118 -128115812 + MER57A LTR ERV1 385 399 -4 2888 258 44 60 chrX 34484192 34485134 -128114796 + L1MEc LINE L1 39 995 -5401 2083 144 0 0 chrX 34485134 34485444 -128114486 - AluSx SINE Alu 0 312 1 2888 258 44 60 chrX 34485444 34485463 -128114467 + L1MEc LINE L1 995 1013 -5383 1893 122 0 3 chrX 34485463 34485749 -128114181 + L1MB3 LINE L1 5892 6176 -7 2888 258 44 60 chrX 34485749 34486255 -128113675 + L1MEc LINE L1 1013 1296 -5100 1800 146 71 0 chrX 34486255 34486522 -128113408 + AluSx SINE Alu 1 286 -26 2888 258 44 60 chrX 34486522 34487022 -128112908 + L1MEc LINE L1 1296 1803 -4593 916 73 0 0 chrX 34487036 34487146 -128112784 + AluSq/x SINE Alu 1 110 -203 2485 69 10 0 chrX 34487415 34487718 -128112212 - AluY SINE Alu -5 306 1 1038 101 0 7 chrX 34488392 34488531 -128111399 + AluSq/x SINE Alu 1 138 -175 1031 165 0 0 chrX 34488725 34488889 -128111041 + FAM SINE Alu 2 165 -10 635 167 28 94 chrX 34489943 34490123 -128109807 - L2 LINE L2 -5 3308 3141 2461 166 42 2 chrX 34490140 34490550 -128109380 - MSTB LTR MaLR 0 426 1 363 212 10 40 chrX 34490609 34490708 -128109222 + L2 LINE L2 1609 1704 -1610 2981 62 5 3 chrX 34490712 34491084 -128108846 + THE1C LTR MaLR 3 375 0 758 238 151 44 chrX 34491099 34491689 -128108241 + L2 LINE L2 2662 3309 -4 1880 84 11 0 chrX 34491774 34492061 -128107869 - L1PA10 LINE L1 0 6168 5905 1959 128 44 3 chrX 34492061 34492358 -128107572 - AluSx SINE Alu -3 309 1 1377 179 45 62 chrX 34493141 34493432 -128106498 + AluJo SINE Alu 1 286 -26 23 0 0 0 chrX 34493945 34493968 -128105962 + AT_rich Low_complexity Low_complexity 1 23 0 2282 106 3 0 chrX 34493972 34494273 -128105657 + AluSx SINE Alu 1 302 -10 234 0 0 0 chrX 34494696 34494722 -128105208 + (TTG)n Simple_repeat Simple_repeat 2 27 0 675 130 154 16 chrX 34495549 34495672 -128104258 + THE1C LTR MaLR 3 142 -233 260 241 0 24 chrX 34495827 34495910 -128104020 - MLT1B LTR MaLR -120 270 190 300 133 0 0 chrX 34495915 34495975 -128103955 + (GA)n Simple_repeat Simple_repeat 2 61 0 861 129 66 40 chrX 34495975 34496163 -128103767 - MLT1B LTR MaLR -196 178 1 2043 105 56 7 chrX 34496650 34496935 -128102995 + AluSg SINE Alu 1 299 -11 3479 123 2 38 chrX 34497113 34497457 -128102473 - LTR26B LTR ERV1 0 531 212 2340 77 0 7 chrX 34497457 34497767 -128102163 - AluSx SINE Alu 0 308 1 3479 123 2 38 chrX 34497767 34497972 -128101958 - LTR26B LTR ERV1 -319 212 1 823 110 68 0 chrX 34498072 34498218 -128101712 - Charlie5 DNA MER1_type 0 2619 2464 270 215 15 15 chrX 34498539 34498604 -128101326 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 433 249 68 68 chrX 34498612 34498849 -128101081 + MIR SINE MIR 26 262 0 277 263 118 0 chrX 34499565 34499641 -128100289 + L2 LINE L2 3187 3271 -1 1019 242 8 28 chrX 34499926 34500174 -128099756 + MLT1K LTR MaLR 344 586 -2 2314 104 3 0 chrX 34500185 34500484 -128099446 + AluSx SINE Alu 1 300 -12 363 78 0 0 chrX 34500605 34500656 -128099274 + (TATAG)n Simple_repeat Simple_repeat 2 52 0 944 153 11 28 chrX 34500911 34501087 -128098843 + MER5B DNA MER1_type 1 173 -5 596 205 18 0 chrX 34501338 34501450 -128098480 + MER81 DNA DNA 1 114 0 1192 195 217 7 chrX 34501654 34502064 -128097866 - LTR54B LTR ERV1 -2 496 1 2211 158 6 6 chrX 34502114 34502468 -128097462 + MLT1A1 LTR MaLR 10 363 -2 2213 93 21 0 chrX 34502484 34502774 -128097156 - AluSx SINE Alu -16 296 1 253 279 231 7 chrX 34502828 34502975 -128096955 - MER5A DNA MER1_type -9 180 1 606 293 76 26 chrX 34503094 34503322 -128096608 + L1M4 LINE L1 3545 3802 -2344 2021 86 39 25 chrX 34503322 34503626 -128096304 + AluSx SINE Alu 1 308 0 606 293 76 26 chrX 34503626 34503778 -128096152 + L1M4 LINE L1 3802 3945 -2201 274 346 0 0 chrX 34503797 34503904 -128096026 + MERVL LTR ERVL 3382 3488 -1997 5663 89 34 12 chrX 34503925 34504394 -128095536 - L1MA2 LINE L1 -1 7722 7226 2253 75 30 24 chrX 34504394 34504689 -128095241 - AluSp SINE Alu -16 297 1 5663 89 34 12 chrX 34504689 34505050 -128094880 - L1MA2 LINE L1 -497 7226 6874 2809 118 9 2 chrX 34505050 34505491 -128094439 - L1MA2 LINE L1 -1213 6352 5909 915 121 40 69 chrX 34505487 34505660 -128094270 - L1MA2 LINE L1 -7376 189 22 * 316 345 0 9 chrX 34505670 34505783 -128094147 + MERVL LTR ERVL 3481 3592 -2062 2340 135 15 81 chrX 34505849 34506307 -128093623 - MSTC LTR MaLR 0 428 1 4204 223 69 64 chrX 34506307 34507551 -128092379 - MSTC-int LTR MaLR 0 1651 402 1528 105 93 34 chrX 34507552 34508277 -128091653 + SVA Other Other 483 824 -562 2092 92 4 0 chrX 34508397 34508692 -128091238 + AluSx SINE Alu 22 317 0 814 168 0 0 chrX 34508700 34508819 -128091111 + FLAM_C SINE Alu 1 119 -24 882 95 0 0 chrX 34508819 34508945 -128090985 + (TAGA)n Simple_repeat Simple_repeat 1 126 0 693 259 40 43 chrX 34508969 34509247 -128090683 + L1ME4a LINE L1 5621 5897 -224 786 198 60 48 chrX 34509252 34509500 -128090430 + L1MC5 LINE L1 7133 7383 -578 1747 65 23 0 chrX 34509521 34509738 -128090192 + MER30 DNA MER1_type 9 230 0 1784 179 30 95 chrX 34509744 34509832 -128090098 + L1MC5 LINE L1 7390 7482 -479 2446 31 0 31 chrX 34509832 34510155 -128089775 + AluY SINE Alu 1 314 0 1784 179 30 95 chrX 34510155 34510636 -128089294 + L1MC5 LINE L1 7482 7923 -38 1007 199 95 34 chrX 34510663 34511108 -128088822 + LTR33 LTR ERVL 4 520 -1 219 36 0 0 chrX 34511659 34511687 -128088243 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1708 173 3 21 chrX 34511920 34512203 -128087727 - AluJo SINE Alu -34 278 1 887 225 68 114 chrX 34512225 34512638 -128087292 - L1MC4a LINE L1 -1841 5967 5574 584 168 65 28 chrX 34512638 34512724 -128087206 - MLT1E1 LTR MaLR -543 111 19 2427 148 18 48 chrX 34512724 34512779 -128087151 + MSTB LTR MaLR 1 56 -370 2260 116 0 7 chrX 34512779 34513081 -128086849 + AluSx SINE Alu 1 300 -12 2427 148 18 48 chrX 34513081 34513464 -128086466 + MSTB LTR MaLR 56 426 0 584 168 65 28 chrX 34513464 34513484 -128086446 - MLT1E1 LTR MaLR -635 19 1 1742 134 101 0 chrX 34513676 34513944 -128085986 - AluSx SINE Alu -17 295 1 2280 106 0 0 chrX 34515072 34515364 -128084566 - AluSx SINE Alu -20 292 1 781 151 0 0 chrX 34515911 34516030 -128083900 - AluJb SINE Alu -6 306 188 2062 104 0 31 chrX 34516087 34516375 -128083555 + AluSq SINE Alu 17 295 -18 1809 122 54 30 chrX 34516389 34516724 -128083206 - L1MD1 LINE L1 -6 6630 6288 1506 172 77 30 chrX 34516739 34517036 -128082894 - AluJo SINE Alu -1 311 1 3179 215 27 26 chrX 34517039 34517687 -128082243 - L1MD1 LINE L1 -840 5700 5066 2329 87 10 3 chrX 34517687 34517986 -128081944 + AluSq SINE Alu 1 301 -12 3179 215 27 26 chrX 34517986 34518238 -128081692 - L1MD1 LINE L1 -1474 5066 4816 * 5202 128 6 32 chrX 34518234 34518278 -128081652 - L1MB3 LINE L1 -3 6180 6136 2075 135 3 7 chrX 34518278 34518574 -128081356 - AluJb SINE Alu -17 295 1 5202 128 6 32 chrX 34518574 34519229 -128080701 - L1MB3 LINE L1 -47 6136 5466 219 69 0 0 chrX 34519229 34519258 -128080672 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1827 150 32 0 chrX 34519261 34519541 -128080389 - AluSx SINE Alu -23 289 1 5202 128 6 32 chrX 34519541 34519703 -128080227 - L1MB3 LINE L1 -719 5464 5337 4773 220 22 36 chrX 34519708 34519843 -128080087 - L1MD1 LINE L1 -1754 4786 4651 252 0 0 0 chrX 34519843 34519871 -128080059 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4773 220 22 36 chrX 34519871 34520076 -128079854 - L1MD1 LINE L1 -1889 4651 4445 2471 86 0 0 chrX 34520076 34520378 -128079552 - AluSg SINE Alu -8 302 1 4773 220 22 36 chrX 34520378 34521374 -128078556 - L1MD1 LINE L1 -2095 4445 3467 4944 180 80 18 chrX 34521417 34522531 -128077399 - L1MD1 LINE L1 -3462 3078 2034 2467 100 0 0 chrX 34522531 34522841 -128077089 + AluSx SINE Alu 1 310 -2 4944 180 80 18 chrX 34522841 34523674 -128076256 - L1MD1 LINE L1 -4506 2034 810 1986 151 16 28 chrX 34523905 34524342 -128075588 + L1PA3 LINE L1 5724 6155 0 528 219 0 8 chrX 34524356 34524479 -128075451 - L1M4 LINE L1 -1150 4996 4875 2280 124 20 18 chrX 34524499 34524893 -128075037 + L1MB8 LINE L1 5783 6177 -1 587 149 0 0 chrX 34524917 34525004 -128074926 - AluJb SINE Alu -32 280 194 2381 105 0 0 chrX 34525160 34525466 -128074464 + AluSx SINE Alu 1 306 -6 344 215 38 0 chrX 34525554 34525633 -128074297 + L1ME LINE L1 5524 5605 -516 2413 61 0 29 chrX 34525877 34526187 -128073743 + AluY SINE Alu 1 301 -10 1168 248 12 93 chrX 34526290 34526710 -128073220 + MLT1J LTR MaLR 118 503 -8 198 255 0 39 chrX 34526841 34526892 -128073038 + L2 LINE L2 3206 3254 -18 1867 152 140 8 chrX 34527143 34527499 -128072431 + MER57A LTR ERV1 1 403 0 629 126 50 17 chrX 34527499 34527618 -128072312 + L1MA9 LINE L1 6151 6273 -39 3404 212 71 78 chrX 34528499 34528944 -128070986 - L1MC4 LINE L1 0 8042 7595 2379 77 47 0 chrX 34528944 34529242 -128070688 - AluSx SINE Alu 0 312 1 3404 212 71 78 chrX 34529242 34529941 -128069989 - L1MC4 LINE L1 -447 7595 6907 1027 178 76 10 chrX 34529941 34530138 -128069792 - MER6B DNA MER2_type 0 210 1 3404 212 71 78 chrX 34530138 34530306 -128069624 - L1MC4 LINE L1 -1135 6907 6739 2305 78 3 0 chrX 34530314 34530650 -128069280 - AluSp SINE Alu 0 337 1 2289 112 0 0 chrX 34530946 34531240 -128068690 - AluSx SINE Alu -18 294 1 29 47 0 0 chrX 34531705 34531748 -128068182 + AT_rich Low_complexity Low_complexity 1 43 0 1399 155 30 11 chrX 34532000 34532264 -128067666 - L1MC1 LINE L1 0 6333 6065 1262 96 5 16 chrX 34532266 34532453 -128067477 + THE1C-int LTR MaLR 1390 1574 -6 1782 165 40 40 chrX 34532458 34532833 -128067097 + THE1C LTR MaLR 1 375 0 13571 126 23 1 chrX 34532833 34534751 -128065179 - L1M1 LINE L1 -5583 1982 22 278 268 105 59 chrX 34534991 34535144 -128064786 + MLT1I LTR MaLR 75 234 -175 1867 102 70 0 chrX 34535337 34535593 -128064337 + L1M1 LINE L1 920 1193 -6372 271 204 56 21 chrX 34535602 34535654 -128064276 + (TA)n Simple_repeat Simple_repeat 2 51 -97 2481 67 103 3 chrX 34535654 34535985 -128063945 + THE1B LTR MaLR 1 364 0 271 204 56 21 chrX 34535985 34536074 -128063856 + (TA)n Simple_repeat Simple_repeat 51 148 0 2333 104 0 22 chrX 34536578 34536895 -128063035 - AluSx SINE Alu -2 310 1 1266 272 12 26 chrX 34537040 34537125 -128062805 + LTR16C LTR ERVL 151 236 -255 4607 140 97 13 chrX 34537125 34537920 -128062010 - MER6 DNA MER2_type -3 862 1 1266 272 12 26 chrX 34537920 34538180 -128061750 + LTR16C LTR ERVL 236 491 0 261 246 62 0 chrX 34538513 34538578 -128061352 - L2 LINE L2 0 3313 3245 964 264 61 0 chrX 34539056 34539287 -128060643 + HERVL LTR ERVL 4036 4280 -1374 994 295 73 20 chrX 34539287 34539877 -128060053 - L1MC1 LINE L1 -747 5399 4836 2542 74 0 3 chrX 34539877 34540187 -128059743 + AluSq SINE Alu 1 309 -4 994 295 73 20 chrX 34540187 34540691 -128059239 - L1MC1 LINE L1 -1310 4836 4360 1915 118 22 12 chrX 34540703 34541024 -128058906 + L1 LINE L1 4519 4842 -1304 393 138 0 0 chrX 34541185 34541243 -128058687 + MLT1B LTR MaLR 333 390 0 4955 164 24 71 chrX 34541333 34542441 -128057489 + L1MD2 LINE L1 5035 6193 -166 2331 110 3 0 chrX 34542441 34542751 -128057179 + AluSq SINE Alu 1 311 -2 4955 164 24 71 chrX 34542751 34542879 -128057051 + L1MD2 LINE L1 6193 6208 -151 1585 158 75 22 chrX 34542879 34543157 -128056773 + AluJo SINE Alu 2 294 -18 4955 164 24 71 chrX 34543157 34543256 -128056674 + L1MD2 LINE L1 6208 6310 -49 3728 127 81 55 chrX 34543256 34543949 -128055981 - MER50 LTR ERV1 -23 711 1 2454 82 0 19 chrX 34544143 34544461 -128055469 - AluSx SINE Alu 0 312 1 4156 87 9 2 chrX 34544678 34545228 -128054702 + MER41A LTR ERV1 1 554 0 311 335 116 55 chrX 34546206 34546516 -128053414 - L2 LINE L2 -28 3244 2916 423 297 0 104 chrX 34546524 34546706 -128053224 + LTR16B LTR ERVL 4 166 -298 1132 251 86 65 chrX 34546708 34547045 -128052885 - MER41C LTR ERV1 -9 545 191 2183 90 7 13 chrX 34547045 34547346 -128052584 - AluSx SINE Alu -13 299 1 1132 251 86 65 chrX 34547346 34547542 -128052388 - MER41C LTR ERV1 -363 191 1 894 319 6 16 chrX 34547542 34547855 -128052075 + LTR16B LTR ERVL 155 464 0 648 186 8 17 chrX 34548026 34548144 -128051786 - LTR8 LTR ERV1 0 691 575 462 49 0 0 chrX 34548147 34548208 -128051722 + (TG)n Simple_repeat Simple_repeat 2 62 0 546 133 0 0 chrX 34548208 34548283 -128051647 - AluSg/x SINE Alu -27 283 209 3450 116 37 85 chrX 34548296 34548943 -128050987 - LTR8A LTR ERV1 -111 616 1 2308 106 0 3 chrX 34549058 34549360 -128050570 + AluSg SINE Alu 1 301 -9 243 223 25 25 chrX 34550861 34550982 -128048948 + (CCG)n Simple_repeat Simple_repeat 1 121 0 251 337 0 0 chrX 34551040 34551135 -128048795 + (CTG)n Simple_repeat Simple_repeat 2 96 0 1534 228 24 9 chrX 34551401 34551730 -128048200 + LTR40a LTR ERVL 1 334 -185 948 184 65 10 chrX 34551741 34551942 -128047988 - REP3 LTR ERV -37 525 314 195 33 67 0 chrX 34551945 34551975 -128047955 + CT-rich Low_complexity Low_complexity 1 180 0 2418 79 7 7 chrX 34551975 34552280 -128047650 - AluSx SINE Alu 0 340 6 594 173 15 68 chrX 34552281 34552414 -128047516 - REP3 LTR ERV -236 326 201 851 243 11 11 chrX 34554400 34554589 -128045341 - REP3 LTR ERV -373 189 1 635 197 84 34 chrX 34554590 34554768 -128045162 + LTR40b LTR ERVL 276 462 0 8141 226 52 68 chrX 34554775 34554860 -128045070 + HERVL40 LTR ERVL 10 95 -5435 2091 146 0 0 chrX 34554860 34555161 -128044769 + AluJb SINE Alu 1 301 -11 8141 226 52 68 chrX 34555161 34557269 -128042661 + HERVL40 LTR ERVL 95 2167 -3363 * 10948 217 49 24 chrX 34557254 34558911 -128041019 + HERVL40 LTR ERVL 2036 1587 -1450 2322 82 0 33 chrX 34558911 34559216 -128040714 + AluSc SINE Alu 1 295 -14 10948 217 49 24 chrX 34559216 34560000 -128039930 + HERVL40 LTR ERVL 1586 2349 -688 314 253 114 30 chrX 34560529 34560695 -128039235 - L1MEd LINE L1 -5898 221 42 2166 110 0 36 chrX 34560712 34561045 -128038885 + AluSx SINE Alu 1 312 0 280 202 47 78 chrX 34561676 34561805 -128038125 - Charlie2 DNA MER1_type -5 2857 2733 4761 45 30 0 chrX 34561913 34562485 -128037445 - LTR10C LTR ERV1 -2 589 1 3996 127 28 68 chrX 34562488 34562628 -128037302 - LTR8 LTR ERV1 -8 683 539 1994 141 0 20 chrX 34562628 34562933 -128036997 - AluJb SINE Alu -13 299 1 3996 127 28 68 chrX 34562933 34563503 -128036427 - LTR8 LTR ERV1 -152 539 1 516 270 91 34 chrX 34563539 34563807 -128036123 - MLT1J1 LTR MaLR -175 271 26 552 269 52 21 chrX 34564200 34564393 -128035537 - HsTC2 DNA Tc2 -276 1622 1248 1200 222 47 35 chrX 34564395 34564540 -128035390 - HsTC2 DNA Tc2 -1555 343 201 2323 98 0 3 chrX 34564540 34564836 -128035094 - AluSx SINE Alu -17 295 1 1200 222 47 35 chrX 34564836 34565028 -128034902 - HsTC2 DNA Tc2 -1697 201 2 9323 89 30 1 chrX 34565306 34566557 -128033373 - HSMAR1 DNA Mariner 0 1287 1 542 279 118 43 chrX 34567003 34567325 -128032605 - MLT1J1 LTR MaLR -5 441 96 1754 173 68 57 chrX 34567326 34567779 -128032151 - LTR56 LTR ERV1 0 467 9 2390 95 5 97 chrX 34567800 34568212 -128031718 + MER51B LTR ERV1 1 374 -3 1261 94 35 0 chrX 34568214 34568384 -128031546 + MER51B-int LTR ERV1 1 176 -7640 * 9307 143 31 23 chrX 34568372 34569987 -128029943 + MER51B-int LTR ERV1 329 1956 -5860 2484 68 6 17 chrX 34569975 34570327 -128029603 + MER51B-int LTR ERV1 2218 2565 -5251 * 1515 230 27 18 chrX 34570491 34570822 -128029108 - L1MDa LINE L1 -5981 559 226 698 179 26 0 chrX 34570841 34570958 -128028972 - L1MDa LINE L1 -6406 134 15 906 224 20 43 chrX 34570961 34571216 -128028714 - L1ME3A LINE L1 -1 6169 5921 23 92 0 0 chrX 34571292 34571357 -128028573 + AT_rich Low_complexity Low_complexity 1 65 0 438 248 64 14 chrX 34571394 34571535 -128028395 - MIR SINE MIR -71 191 44 941 123 34 7 chrX 34572178 34572324 -128027606 - AluJo SINE Alu -162 150 1 952 231 89 6 chrX 34572663 34573084 -128026846 - LTR33 LTR ERVL 0 521 13 188 83 0 28 chrX 34573160 34573196 -128026734 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2300 114 7 0 chrX 34573379 34573732 -128026198 - AluSx SINE Alu 0 355 1 840 160 0 0 chrX 34574205 34574330 -128025600 + FLAM_C SINE Alu 1 125 -18 2156 129 0 7 chrX 34574455 34574758 -128025172 - AluSq SINE Alu -12 301 1 2324 101 0 3 chrX 34575249 34575546 -128024384 + AluSx SINE Alu 1 296 -16 370 264 185 34 chrX 34575980 34576450 -128023480 + L1MB2 LINE L1 4729 5269 -877 329 221 39 0 chrX 34576476 34576553 -128023377 + MER116 DNA Mariner 1 80 0 4475 117 33 9 chrX 34576761 34577451 -128022479 + L1MB2 LINE L1 5463 6169 -2 513 298 120 35 chrX 34577480 34577808 -128022122 + L1MC4a LINE L1 5438 5807 -2001 2576 84 20 3 chrX 34577808 34578155 -128021775 - L1PA10 LINE L1 -4 6164 5812 513 298 120 35 chrX 34578155 34578226 -128021704 + L1MC4a LINE L1 5807 5871 -1937 1716 156 143 3 chrX 34578347 34578668 -128021262 + MLT2D LTR ERVL 1 366 -48 1063 233 0 0 chrX 34578668 34578883 -128021047 + L1MC/D LINE L1 4042 4256 -1890 2455 84 0 3 chrX 34579990 34580298 -128019632 - AluSg SINE Alu -3 307 1 4234 198 57 52 chrX 34581343 34582548 -128017382 + L1MC/D LINE L1 4284 5477 -753 5793 128 19 5 chrX 34582548 34583698 -128016232 + L1PA16 LINE L1 4998 6166 0 2099 115 11 80 chrX 34583701 34583849 -128016081 + Tigger1 DNA MER2_type 2078 2235 -183 789 160 15 0 chrX 34583849 34583980 -128015950 - FLAM_C SINE Alu 0 133 1 2099 115 11 80 chrX 34583980 34584195 -128015735 + Tigger1 DNA MER2_type 2235 2416 -2 2274 129 0 0 chrX 34584629 34584940 -128014990 + AluSx SINE Alu 1 311 -1 1929 139 7 4 chrX 34585065 34585377 -128014553 - AluJb SINE Alu 0 313 1 2269 120 7 0 chrX 34585893 34586201 -128013729 - AluSx SINE Alu -2 310 1 3413 65 23 0 chrX 34586237 34586671 -128013259 + MLT2A1 LTR ERVL 1 444 0 263 294 108 0 chrX 34586803 34586905 -128013025 - L2 LINE L2 -2 3270 3158 478 310 13 6 chrX 34587381 34587539 -128012391 - MER5B DNA MER1_type -16 162 4 371 278 67 43 chrX 34588132 34588306 -128011624 - MIR SINE MIR -63 145 4 1346 278 19 45 chrX 34588417 34588656 -128011274 + LTR16B LTR ERVL 9 233 -231 2204 88 7 44 chrX 34588656 34588982 -128010948 - AluSx SINE Alu 0 315 1 1346 278 19 45 chrX 34588982 34589208 -128010722 + LTR16B LTR ERVL 233 463 -1 1024 174 24 19 chrX 34589954 34590166 -128009764 - AluJo SINE Alu -2 310 98 2384 100 0 3 chrX 34590285 34590594 -128009336 + AluSg SINE Alu 1 308 -2 1435 224 140 21 chrX 34590613 34590979 -128008951 + LTR16C LTR ERVL 1 429 -62 2433 108 34 3 chrX 34590979 34591332 -128008598 + THE1B LTR MaLR 1 364 0 1435 224 140 21 chrX 34591332 34591402 -128008528 + LTR16C LTR ERVL 429 489 -2 2276 109 3 0 chrX 34592753 34593056 -128006874 - AluSx SINE Alu -8 304 1 652 211 126 0 chrX 34593159 34593349 -128006581 - MIR SINE MIR 0 262 49 2312 91 10 3 chrX 34593547 34593855 -128006075 - AluSx SINE Alu 0 312 3 1040 271 121 15 chrX 34594100 34594506 -128005424 - MLT1L LTR MaLR -14 601 153 242 316 201 22 chrX 34595104 34595243 -128004687 - MIR SINE MIR -50 212 49 315 295 49 47 chrX 34595341 34595525 -128004405 + MIR SINE MIR 2 187 -61 1660 170 52 14 chrX 34596039 34596159 -128003771 + AluJo SINE Alu 2 116 -196 2377 95 7 0 chrX 34596159 34596464 -128003466 + AluSg SINE Alu 1 307 -3 1660 170 52 14 chrX 34596464 34596632 -128003298 + AluJo SINE Alu 116 301 -11 2489 211 61 2 chrX 34596647 34597173 -128002757 - L1ME3A LINE L1 0 6170 5614 241 253 42 32 chrX 34597512 34597607 -128002323 + MIR SINE MIR 40 135 -73 3554 109 0 4 chrX 34599179 34599683 -128000247 + L1PA16 LINE L1 5656 6157 -9 2585 65 3 0 chrX 34599768 34600077 -127999853 + AluSp SINE Alu 1 310 -3 2052 150 0 10 chrX 34600323 34600623 -127999307 - AluJo SINE Alu -15 297 1 6768 106 23 43 chrX 34600692 34601763 -127998167 + L1MA6 LINE L1 4723 5747 -553 2145 121 0 16 chrX 34601763 34602068 -127997862 + AluSx SINE Alu 1 300 -12 6768 106 23 43 chrX 34602068 34602610 -127997320 + L1MA6 LINE L1 5747 6299 -1 235 288 12 25 chrX 34602618 34602698 -127997232 - L1ME LINE L1 -312 5858 5780 192 245 19 0 chrX 34603628 34603681 -127996249 - MIR3 SINE MIR -16 192 139 972 311 168 18 chrX 34603687 34604606 -127995324 - L2 LINE L2 -2 3270 2238 2212 150 40 67 chrX 34604607 34605053 -127994877 - Tigger2a DNA MER2_type 0 434 1 229 289 0 13 chrX 34605087 34605163 -127994767 - LTR33 LTR ERVL -4 517 443 * 305 179 18 122 chrX 34605155 34605290 -127994640 - MLT1H LTR MaLR -10 533 281 1481 304 11 4 chrX 34605336 34605916 -127994014 - HERVL LTR ERVL -1368 4286 3700 2499 136 42 45 chrX 34605916 34606343 -127993587 + MSTC LTR MaLR 1 426 -2 2308 207 11 8 chrX 34606343 34606812 -127993118 + MSTC-int LTR MaLR 2 471 -1264 26 0 0 0 chrX 34606812 34606838 -127993092 + AT_rich Low_complexity Low_complexity 1 26 0 6017 96 39 26 chrX 34606838 34607758 -127992172 - SVA Other Other 0 1386 455 1115 88 0 7 chrX 34607881 34608028 -127991902 + MER51B-int LTR ERV1 4731 4876 -2661 * 1982 81 186 134 chrX 34608026 34608156 -127991774 + MER51B-int LTR ERV1 5446 5568 -1969 2012 142 3 0 chrX 34608156 34608444 -127991486 - AluSx SINE Alu -13 299 11 1982 81 186 134 chrX 34608444 34608611 -127991319 + MER51B-int LTR ERV1 5568 5725 -1812 234 51 0 0 chrX 34608611 34608650 -127991280 - Alu SINE Alu 0 301 263 1982 81 186 134 chrX 34608650 34608782 -127991148 + MER51B-int LTR ERV1 5725 5938 -1599 * 4637 128 118 100 chrX 34608780 34609557 -127990373 + MER51B-int LTR ERV1 6757 7559 -257 2499 78 0 3 chrX 34609557 34609863 -127990067 - AluSq SINE Alu -8 305 1 4637 128 118 100 chrX 34609863 34610126 -127989804 + MER51B-int LTR ERV1 7559 7816 0 2369 99 5 94 chrX 34610127 34610541 -127989389 + MER51B LTR ERV1 1 377 0 254 260 250 0 chrX 34610541 34610641 -127989289 - MLT1J LTR MaLR -386 125 1 * 2320 162 63 103 chrX 34610641 34611378 -127988552 - Charlie2 DNA MER1_type -123 2739 2032 1502 231 52 28 chrX 34611701 34612239 -127987691 + L1M4 LINE L1 4457 5007 -1139 2439 69 0 0 chrX 34612262 34612552 -127987378 - AluY SINE Alu -21 290 1 1733 145 6 31 chrX 34612827 34613176 -127986754 - MER61C LTR ERV1 0 434 1 370 271 100 37 chrX 34613803 34613965 -127985965 + LTR33A LTR ERVL 17 162 -361 1988 122 3 44 chrX 34614104 34614423 -127985507 - AluSx SINE Alu 0 307 1 1684 150 5 125 chrX 34614759 34615152 -127984778 + MER7A DNA MER2_type 2 345 -1 4275 94 25 102 chrX 34615500 34616248 -127983682 + LTR8 LTR ERV1 1 691 0 4049 177 50 19 chrX 34616651 34617452 -127982478 + LTR1B LTR ERV1 1 826 0 20919 159 21 15 chrX 34617452 34622059 -127977871 + HUERS-P2 LTR ERV1 1 4871 -417 15570 185 22 19 chrX 34622068 34624517 -127975413 - L1PB1 LINE L1 0 6867 4427 2187 95 10 14 chrX 34624517 34624813 -127975117 - AluSc SINE Alu -14 295 1 15570 185 22 19 chrX 34624813 34626332 -127973598 - L1PB1 LINE L1 -2440 4427 2914 2517 77 0 0 chrX 34626332 34626643 -127973287 - AluY SINE Alu 0 311 1 15570 185 22 19 chrX 34626643 34628260 -127971670 - L1PB1 LINE L1 -3953 2914 1094 1794 148 53 18 chrX 34628264 34628601 -127971329 - L1PB1 LINE L1 -5817 1046 698 11856 145 2 8 chrX 34628601 34628789 -127971141 + HUERS-P2 LTR ERV1 4859 5047 -2044 561 30 0 0 chrX 34628789 34628856 -127971074 + (TC)n Simple_repeat Simple_repeat 2 68 0 2232 67 7 18 chrX 34628856 34629140 -127970790 - AluSp SINE Alu -32 281 1 11856 145 2 8 chrX 34629140 34630706 -127969224 + HUERS-P2 LTR ERV1 5045 6603 -488 2204 135 9 15 chrX 34630727 34630741 -127969189 + HUERS-P2 LTR ERV1 2766 2779 -309 2334 99 10 0 chrX 34630741 34631043 -127968887 - AluSx SINE Alu -7 305 1 2204 135 9 15 chrX 34631043 34631353 -127968577 + HUERS-P2 LTR ERV1 2779 3088 0 3819 184 48 27 chrX 34631353 34632162 -127967768 + LTR1B LTR ERV1 1 826 0 250 237 53 13 chrX 34632457 34632533 -127967397 + LTR16C LTR ERVL 153 231 -260 * 1079 129 169 0 chrX 34632531 34632732 -127967198 + LTR40b LTR ERVL 228 462 0 515 252 0 22 chrX 34632886 34632992 -127966938 + LTR16C LTR ERVL 360 464 -27 2602 109 3 8 chrX 34632992 34633358 -127966572 - THE1B LTR MaLR 0 364 1 515 252 0 22 chrX 34633358 34633386 -127966544 + LTR16C LTR ERVL 464 491 0 2076 137 0 0 chrX 34634044 34634367 -127965563 - AluSx SINE Alu 0 323 1 564 232 129 46 chrX 34634641 34634882 -127965048 - MIR SINE MIR -1 261 1 2317 118 3 0 chrX 34635252 34635557 -127964373 - AluSx SINE Alu -6 306 1 255 31 0 0 chrX 34635652 34635684 -127964246 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1016 190 58 0 chrX 34635719 34635924 -127964006 + MIR SINE MIR 27 243 -19 2522 54 0 0 chrX 34636551 34636846 -127963084 - AluY SINE Alu -16 295 1 1519 247 92 32 chrX 34636910 34637670 -127962260 + L1MC5 LINE L1 6962 7660 -301 2279 87 24 0 chrX 34637670 34637957 -127961973 + AluSg SINE Alu 1 294 -16 1519 247 92 32 chrX 34637957 34638247 -127961683 + L1MC5 LINE L1 7660 7931 -30 * 1583 133 74 23 chrX 34638228 34638537 -127961393 + L1MD3 LINE L1 7661 7985 -10 665 344 57 25 chrX 34638908 34639350 -127960580 - HAL1b LINE L1 -798 550 95 1929 120 60 27 chrX 34640330 34640630 -127959300 - AluSx SINE Alu -2 310 1 541 294 97 4 chrX 34640692 34640920 -127959010 + MIR SINE MIR 11 259 -3 3459 210 59 36 chrX 34640940 34641888 -127958042 + L1MB1 LINE L1 3466 4435 -1711 1079 152 8 91 chrX 34641879 34642122 -127957808 + L1MB1 LINE L1 5047 5269 -877 * 2490 146 2 38 chrX 34642575 34643026 -127956904 + L1MB1 LINE L1 5729 6163 -5 266 327 73 0 chrX 34643035 34643145 -127956785 - LTR16A LTR ERVL -323 127 10 1073 288 91 32 chrX 34643147 34643250 -127956680 + L3 LINE CR1 629 724 -853 2475 142 36 14 chrX 34643250 34643667 -127956263 + MSTB LTR MaLR 1 426 0 1073 288 91 32 chrX 34643667 34644088 -127955842 + L3 LINE CR1 724 1184 -393 783 188 231 35 chrX 34644186 34644415 -127955515 - L1MD2 LINE L1 -2 6357 6084 4115 201 24 15 chrX 34644418 34645706 -127954224 - L1MDa LINE L1 -2920 3620 2326 5051 80 22 146 chrX 34645726 34646396 -127953534 + Tigger3(Golem) DNA MER2_type 1 752 -2277 1025 131 0 0 chrX 34646396 34646533 -127953397 + AluSq/x SINE Alu 3 139 -173 413 117 0 0 chrX 34646534 34646594 -127953336 + AluS SINE Alu 230 289 -20 5051 80 22 146 chrX 34646594 34647121 -127952809 + Tigger3(Golem) DNA MER2_type 751 3028 -1 7714 180 93 12 chrX 34647121 34649084 -127950846 - L1MDa LINE L1 -4212 2328 18 384 304 15 22 chrX 34649095 34649230 -127950700 + L2 LINE L2 3178 3311 -2 219 308 6 116 chrX 34649233 34649304 -127950626 + L3 LINE CR1 1206 1249 -328 2220 113 6 3 chrX 34649304 34649615 -127950315 - AluSx SINE Alu 0 312 1 219 308 6 116 chrX 34649615 34649715 -127950215 + L3 LINE CR1 1249 1358 -219 288 259 25 0 chrX 34649727 34649808 -127950122 - MER103 DNA DNA -52 114 32 1930 126 0 25 chrX 34649951 34650236 -127949694 + AluSx SINE Alu 1 278 -34 337 88 12 50 chrX 34650237 34650317 -127949613 + (GGAGA)n Simple_repeat Simple_repeat 5 81 0 703 220 17 106 chrX 34650408 34650564 -127949366 - LTR16C LTR ERVL 0 491 361 2086 33 4 8 chrX 34650564 34650805 -127949125 + AluY SINE Alu 53 292 -19 703 220 17 106 chrX 34650805 34650884 -127949046 - LTR16C LTR ERVL -130 361 277 2463 67 0 3 chrX 34851307 34851604 -127748326 - AluY SINE Alu -14 297 2 921 143 0 0 chrX 34852368 34852494 -127747436 - AluSq/x SINE Alu -186 126 1 2341 75 0 0 chrX 34852555 34852860 -127747070 - AluSg SINE Alu 0 305 1 2274 108 0 16 chrX 34852920 34853236 -127746694 - AluSx SINE Alu -1 311 1 2519 86 0 0 chrX 34853907 34854211 -127745719 + AluSx SINE Alu 1 304 -8 2209 176 17 28 chrX 34854670 34855137 -127744793 + L1MB5 LINE L1 5713 6174 0 2265 111 0 3 chrX 34855153 34855451 -127744479 + AluSx SINE Alu 13 309 -3 1802 143 0 39 chrX 34855511 34855797 -127744133 - AluJb SINE Alu -20 292 18 780 82 65 80 chrX 34855797 34855980 -127743950 - L1MA2 LINE L1 -177 6127 5938 889 127 8 8 chrX 34855991 34856125 -127743805 - AluJo SINE Alu -178 134 1 2374 84 3 0 chrX 34856137 34856444 -127743486 - AluSx SINE Alu 0 308 1 1207 111 32 5 chrX 34857749 34857938 -127741992 - AluSg/x SINE Alu 0 310 117 2186 97 0 58 chrX 34857939 34858268 -127741662 - AluSq SINE Alu -3 310 1 234 0 0 0 chrX 34858275 34858301 -127741629 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2257 89 7 0 chrX 34858303 34858583 -127741347 - AluSp SINE Alu -31 282 1 2611 58 3 3 chrX 34858614 34858923 -127741007 + AluSp SINE Alu 1 309 -4 1937 132 14 0 chrX 34858924 34859204 -127740726 + AluSx SINE Alu 16 299 -13 245 224 0 0 chrX 34859231 34859280 -127740650 + MER69 DNA AcHobo 21 69 -2457 698 196 367 0 chrX 34859390 34859630 -127740300 + MER69 DNA AcHobo 330 657 -1869 1918 153 3 26 chrX 34859637 34859950 -127739980 + AluJo SINE Alu 7 312 0 3199 178 46 70 chrX 34860035 34860563 -127739367 + MER69 DNA AcHobo 1654 2193 -333 2428 92 0 13 chrX 34860563 34860877 -127739053 - AluSx SINE Alu -2 310 1 3199 178 46 70 chrX 34860877 34861169 -127738761 + MER69 DNA AcHobo 2193 2453 -73 922 110 0 22 chrX 34861169 34861305 -127738625 - FLAM_C SINE Alu 0 133 1 3199 178 46 70 chrX 34861305 34861376 -127738554 + MER69 DNA AcHobo 2453 2524 -2 247 288 0 27 chrX 34861376 34861449 -127738481 + (CATG)n Simple_repeat Simple_repeat 1 71 0 1809 93 86 32 chrX 34862406 34862685 -127737245 + AluSx SINE Alu 1 294 -18 251 220 0 0 chrX 34862804 34862863 -127737067 - MLT1H LTR MaLR -4 545 487 1904 138 7 7 chrX 34862864 34863153 -127736777 - AluJo SINE Alu -11 301 13 940 110 0 8 chrX 34863153 34863280 -127736650 - AluJo SINE Alu -174 138 13 874 249 185 25 chrX 34863280 34863674 -127736256 - MLT1H LTR MaLR -53 496 40 2404 82 7 23 chrX 34863708 34864014 -127735916 - AluSc SINE Alu -8 301 1 450 81 68 0 chrX 34864028 34864102 -127735828 - L1MB3 LINE L1 -9 6174 6096 1646 149 0 4 chrX 34864129 34864370 -127735560 - AluJo SINE Alu -72 240 1 1297 193 15 45 chrX 34864384 34864512 -127735418 - MER21A LTR ERV1 -472 459 342 2498 88 3 0 chrX 34864512 34864818 -127735112 + AluSx SINE Alu 1 307 -5 1297 193 15 45 chrX 34864818 34864954 -127734976 - MER21A LTR ERV1 -589 342 203 2450 150 17 37 chrX 34864954 34865263 -127734667 - MER65C LTR ERV1 0 461 162 2296 112 3 6 chrX 34865263 34865577 -127734353 + AluSq SINE Alu 1 313 0 2450 150 17 37 chrX 34865577 34865727 -127734203 - MER65C LTR ERV1 -299 162 11 315 130 0 37 chrX 34865727 34865781 -127734149 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 744 88 10 78 chrX 34865783 34865975 -127733955 + (TTTCC)n Simple_repeat Simple_repeat 1 179 0 186 255 0 0 chrX 34865975 34866026 -127733904 + CT-rich Low_complexity Low_complexity 2 52 0 1656 157 50 4 chrX 34866031 34866293 -127733637 - AluJb SINE Alu -38 274 1 295 111 0 111 chrX 34866313 34866343 -127733587 - MER39 LTR ERV1 -371 336 315 2293 103 3 3 chrX 34866343 34866643 -127733287 - AluSc SINE Alu -9 300 1 295 111 0 111 chrX 34866643 34866675 -127733255 - MER39 LTR ERV1 -392 315 281 277 26 0 0 chrX 34866674 34866712 -127733218 - MSTB1 LTR MaLR -45 387 350 * 1543 158 196 22 chrX 34866750 34867112 -127732818 + MSTA LTR MaLR 4 428 0 434 117 115 81 chrX 34867119 34867229 -127732701 - MER21A LTR ERV1 -541 166 70 2200 122 0 7 chrX 34867297 34867626 -127732304 - AluSx SINE Alu 0 327 1 346 153 0 28 chrX 34867672 34867744 -127732186 - MER21A LTR ERV1 -861 70 1 2208 101 3 41 chrX 34867813 34868129 -127731801 + AluSp SINE Alu 1 304 -9 3137 124 51 42 chrX 34868132 34868338 -127731592 + MER21B LTR ERV1 308 511 -352 2479 48 28 3 chrX 34868338 34868629 -127731301 - AluY SINE Alu -13 298 1 3137 124 51 42 chrX 34868629 34868972 -127730958 + MER21B LTR ERV1 511 862 -1 206 229 0 0 chrX 34868992 34869008 -127730922 + A-rich Low_complexity Low_complexity 1 16 -32 2299 112 3 6 chrX 34869008 34869321 -127730609 + AluSx SINE Alu 1 312 0 206 229 0 0 chrX 34869321 34869352 -127730578 + A-rich Low_complexity Low_complexity 15 48 0 2432 102 0 0 chrX 34869775 34870080 -127729850 + AluSx SINE Alu 1 305 -7 537 265 32 124 chrX 34870158 34870818 -127729112 - LTR38B LTR ERV1 0 610 12 1795 161 7 0 chrX 34870818 34871092 -127728838 - AluJb SINE Alu -36 276 1 1856 137 20 20 chrX 34871143 34871443 -127728487 + AluJo SINE Alu 1 300 -12 2282 102 0 3 chrX 34871516 34871837 -127728093 + AluSx SINE Alu 1 320 0 2536 64 6 13 chrX 34871838 34872151 -127727779 + AluY SINE Alu 1 311 0 2124 129 26 19 chrX 34872161 34872263 -127727667 + AluJb SINE Alu 1 101 -211 1906 103 106 32 chrX 34872263 34872602 -127727328 + THE1B LTR MaLR 1 364 0 2124 129 26 19 chrX 34872602 34872809 -127727121 + AluJb SINE Alu 101 312 0 2553 69 3 7 chrX 34873239 34873545 -127726385 - AluSp SINE Alu -8 305 1 1214 146 0 0 chrX 34873748 34873926 -127726004 - AluSg/x SINE Alu 0 310 133 2324 98 0 3 chrX 34874047 34874343 -127725587 + AluSx SINE Alu 1 295 -17 4224 126 10 27 chrX 34874426 34874847 -127725083 + L1MC1 LINE L1 5630 6036 -297 2040 156 0 6 chrX 34874847 34875161 -127724769 + AluJb SINE Alu 1 312 0 4224 126 10 27 chrX 34875161 34875440 -127724490 + L1MC1 LINE L1 6036 6318 -15 2160 92 10 44 chrX 34875447 34875591 -127724339 + AluSx SINE Alu 1 131 -181 2444 92 3 0 chrX 34875591 34875897 -127724033 + AluSp SINE Alu 1 307 -6 2160 92 10 44 chrX 34875897 34876046 -127723884 + AluSx SINE Alu 131 284 -28 180 0 0 0 chrX 34876046 34876066 -127723864 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 258 32 0 0 chrX 34876065 34876096 -127723834 + (TG)n Simple_repeat Simple_repeat 2 32 0 2178 138 0 19 chrX 34876103 34876421 -127723509 + AluSx SINE Alu 1 312 0 2079 94 65 0 chrX 34876431 34876706 -127723224 + AluSp SINE Alu 1 293 -20 28 29 0 0 chrX 34876706 34876741 -127723189 + AT_rich Low_complexity Low_complexity 1 35 0 1900 174 7 3 chrX 34876753 34877086 -127722844 + AluJo SINE Alu 1 334 0 2394 99 13 0 chrX 34877133 34877437 -127722493 + AluSx SINE Alu 1 308 -4 476 273 66 27 chrX 34877531 34877714 -127722216 + MLT1H LTR MaLR 102 291 -258 352 211 33 27 chrX 34877741 34877862 -127722068 + MLT1H LTR MaLR 305 545 -4 33 20 0 20 chrX 34877886 34877904 -127722026 + AT_rich Low_complexity Low_complexity 1 18 -32 2566 74 3 0 chrX 34877904 34878215 -127721715 + AluSp SINE Alu 2 313 0 33 20 0 20 chrX 34878215 34878247 -127721683 + AT_rich Low_complexity Low_complexity 18 50 0 268 141 141 113 chrX 34878247 34878299 -127721631 + L1MC5 LINE L1 7786 7835 -126 1767 132 71 25 chrX 34878299 34878579 -127721351 - AluJo SINE Alu -19 293 1 268 141 141 113 chrX 34878579 34878668 -127721262 + L1MC5 LINE L1 7835 7931 -30 2555 41 17 0 chrX 34878803 34879098 -127720832 - AluY SINE Alu -11 300 1 277 139 47 12 chrX 34880146 34880232 -127719698 + GA-rich Low_complexity Low_complexity 2 90 0 2364 136 66 11 chrX 34881160 34881602 -127718328 - L1MC1 LINE L1 0 6333 5868 2363 109 0 0 chrX 34882242 34882545 -127717385 - AluSx SINE Alu -9 303 1 2067 131 13 13 chrX 34882570 34882882 -127717048 - AluJo SINE Alu 0 312 1 204 125 0 0 chrX 34882890 34882922 -127717008 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2648 56 3 0 chrX 34882929 34883234 -127716696 - AluSp SINE Alu -6 307 2 278 278 0 62 chrX 34883260 34883357 -127716573 - AluYb8 SINE Alu -101 207 119 2472 89 0 0 chrX 34883683 34883985 -127715945 - AluSx SINE Alu -2 310 9 588 230 133 6 chrX 34884019 34884184 -127715746 - HERVL LTR ERVL -2518 3136 2951 1439 130 5 5 chrX 34884184 34884391 -127715539 - AluJb SINE Alu -22 290 84 2444 93 0 0 chrX 34884417 34884728 -127715202 - AluY SINE Alu 0 311 1 2019 132 27 3 chrX 34884942 34885237 -127714693 + AluJo SINE Alu 1 302 -10 942 125 20 0 chrX 34885237 34885389 -127714541 - MER68 LTR ERV1 -407 155 1 2335 95 17 0 chrX 34885530 34885824 -127714106 - AluSx SINE Alu -13 299 1 2332 91 0 0 chrX 34885868 34886201 -127713729 + AluSq SINE Alu 1 333 0 780 218 128 13 chrX 34886341 34886575 -127713355 + L1ME3A LINE L1 5890 6150 -20 1928 131 44 13 chrX 34886873 34887171 -127712759 + AluJo SINE Alu 1 307 -5 2465 97 3 0 chrX 34887171 34887480 -127712450 + AluSx SINE Alu 1 310 -2 553 185 179 0 chrX 34887804 34887955 -127711975 - MER5A DNA MER1_type -8 181 4 1802 139 44 41 chrX 34888187 34888482 -127711448 - AluJo SINE Alu -14 298 3 1880 130 29 14 chrX 34888849 34888983 -127710947 + AluSx SINE Alu 3 134 -172 2341 115 0 6 chrX 34888983 34889296 -127710634 + AluSx SINE Alu 1 311 -1 1880 130 29 14 chrX 34889296 34889461 -127710469 + AluSx SINE Alu 134 306 0 1850 152 8 35 chrX 34889598 34889974 -127709956 - pTR5 LTR ERV1 -1331 1107 742 341 271 135 23 chrX 34889986 34890119 -127709811 - MLT1J LTR MaLR -331 180 33 1458 182 111 14 chrX 34890207 34890576 -127709354 + L1M4 LINE L1 681 1085 -5457 374 119 92 73 chrX 34890580 34890656 -127709274 + L1MB8 LINE L1 6068 6148 -30 2201 118 3 0 chrX 34890656 34890960 -127708970 - AluSx SINE Alu -7 305 1 374 119 92 73 chrX 34890960 34890992 -127708938 + L1MB8 LINE L1 6148 6178 0 2497 76 3 9 chrX 34891007 34891322 -127708608 + AluSq SINE Alu 1 313 0 626 150 0 10 chrX 34891334 34891434 -127708496 + AluJb SINE Alu 37 135 -177 2081 135 3 0 chrX 34891434 34891722 -127708208 + AluSx SINE Alu 1 289 -23 327 245 21 32 chrX 34891734 34891828 -127708102 + L1ME1 LINE L1 5876 5968 -198 582 215 0 0 chrX 34891828 34891935 -127707995 + FLAM_C SINE Alu 2 108 -35 21 36 0 0 chrX 34891964 34891992 -127707938 + AT_rich Low_complexity Low_complexity 1 28 0 399 21 0 0 chrX 34892322 34892370 -127707560 + (CA)n Simple_repeat Simple_repeat 2 49 0 2269 110 0 0 chrX 34893184 34893476 -127706454 + AluSx SINE Alu 1 292 -20 1190 115 13 0 chrX 34893525 34893681 -127706249 + AluSg/x SINE Alu 139 296 -14 2471 90 3 0 chrX 34893684 34893995 -127705935 + AluSp SINE Alu 1 312 -1 1968 144 11 3 chrX 34893998 34894345 -127705585 - L1MB3 LINE L1 -16 6167 5818 1342 118 11 0 chrX 34894381 34894559 -127705371 + AluJb SINE Alu 121 300 -12 375 128 139 35 chrX 34894560 34894646 -127705284 - L1MB3 LINE L1 -356 5824 5730 2154 128 20 0 chrX 34894659 34894956 -127704974 - AluSx SINE Alu -8 304 2 377 317 60 27 chrX 34895788 34895971 -127703959 + L1M4 LINE L1 3318 3506 -2640 264 273 0 0 chrX 34895996 34896051 -127703879 + polypurine Low_complexity Low_complexity 3 57 0 236 322 35 49 chrX 34896055 34896149 -127703781 + L1M4 LINE L1 3520 3613 -2533 2242 97 33 3 chrX 34896149 34896449 -127703481 + AluSg SINE Alu 1 309 -1 236 322 35 49 chrX 34896449 34896497 -127703433 + L1M4 LINE L1 3613 3660 -2486 706 67 0 0 chrX 34896501 34896591 -127703339 + 5S rRNA rRNA 1 90 -31 522 293 26 4 chrX 34896591 34896820 -127703110 + L1M4 LINE L1 3652 3885 -2261 256 208 21 0 chrX 34896846 34896894 -127703036 + MIR SINE MIR 45 93 -115 264 280 56 56 chrX 34896913 34897038 -127702892 + MIR3 SINE MIR 47 171 -37 966 204 47 50 chrX 34897263 34897314 -127702616 + L1MC5 LINE L1 7256 7306 -655 1846 66 70 4 chrX 34897314 34897556 -127702374 + AluY SINE Alu 37 294 -17 966 204 47 50 chrX 34897556 34897580 -127702350 + L1MC5 LINE L1 7306 7329 -632 1075 149 4 115 chrX 34897580 34897650 -127702280 - MER3 DNA MER1_type 0 209 133 1990 105 16 56 chrX 34897650 34897798 -127702132 + AluSx SINE Alu 1 132 -180 2366 91 0 7 chrX 34897798 34898096 -127701834 + AluSp SINE Alu 1 296 -17 1990 105 16 56 chrX 34898096 34898251 -127701679 + AluSx SINE Alu 132 292 -20 1075 149 4 115 chrX 34898251 34898415 -127701515 - MER3 DNA MER1_type -76 133 1 966 204 47 50 chrX 34898415 34898681 -127701249 + L1MC5 LINE L1 7329 7597 -364 1172 96 0 0 chrX 34898685 34898831 -127701099 + AluSx SINE Alu 1 146 -167 3825 63 32 104 chrX 34898831 34898987 -127700943 - LTR66 LTR ERVL 0 610 444 459 0 0 0 chrX 34898987 34899038 -127700892 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3825 63 32 104 chrX 34899038 34899364 -127700566 - LTR66 LTR ERVL -166 444 184 2303 78 34 0 chrX 34899364 34899657 -127700273 - AluSc SINE Alu -3 306 4 3825 63 32 104 chrX 34899657 34899824 -127700106 - LTR66 LTR ERVL -426 184 7 2208 112 3 3 chrX 34899826 34900121 -127699809 + AluSq SINE Alu 3 297 -16 1233 124 0 6 chrX 34900145 34900314 -127699616 + AluSx SINE Alu 140 307 -3 808 215 50 44 chrX 34900321 34900547 -127699383 + L1MC5 LINE L1 7603 7833 -128 1918 141 33 3 chrX 34900547 34900846 -127699084 - AluJo SINE Alu -4 308 1 808 215 50 44 chrX 34900846 34900940 -127698990 + L1MC5 LINE L1 7833 7925 -36 1950 136 0 60 chrX 34900948 34901264 -127698666 + AluJb SINE Alu 1 297 -15 2290 111 0 3 chrX 34901454 34901761 -127698169 + AluSx SINE Alu 1 306 -6 197 293 93 13 chrX 34901817 34901892 -127698038 + L3 LINE CR1 1092 1172 -405 971 261 54 23 chrX 34902111 34902502 -127697428 + LTR16A1 LTR ERVL 55 457 0 2184 87 26 29 chrX 34902857 34903167 -127696763 - AluSc SINE Alu 0 309 1 2351 75 7 10 chrX 34903172 34903467 -127696463 - AluSq SINE Alu -19 294 1 2245 96 0 0 chrX 34903475 34903757 -127696173 + AluSx SINE Alu 14 295 -17 2136 142 0 0 chrX 34904158 34904467 -127695463 + AluSx SINE Alu 1 309 -3 1286 214 87 77 chrX 34904492 34904893 -127695037 + MLT2D LTR ERVL 2 406 -8 2304 105 3 0 chrX 34905632 34905927 -127694003 - AluSx SINE Alu -16 296 1 309 273 107 101 chrX 34906784 34907092 -127692838 - L3 LINE CR1 -334 1243 934 233 305 166 44 chrX 34907090 34907451 -127692479 + L2 LINE L2 2269 2673 -641 * 269 83 0 0 chrX 34908195 34908231 -127691699 + Alu SINE Alu 2 37 -264 1137 133 0 0 chrX 34908231 34908397 -127691533 + AluSg/x SINE Alu 146 311 -1 834 214 97 137 chrX 34908652 34908736 -127691194 - L1ME4a LINE L1 -1 6120 6034 1953 154 3 3 chrX 34908736 34909034 -127690896 + AluSx SINE Alu 1 298 -14 834 214 97 137 chrX 34909034 34909370 -127690560 - L1ME4a LINE L1 -87 6034 5686 663 176 0 25 chrX 34909370 34909489 -127690441 - FLAM_A SINE Alu -17 116 1 834 214 97 137 chrX 34909489 34909570 -127690360 - L1ME4a LINE L1 -435 5686 5603 2363 98 7 3 chrX 34909570 34909867 -127690063 - AluSc SINE Alu -11 298 1 834 214 97 137 chrX 34909867 34910035 -127689895 - L1ME4a LINE L1 -518 5603 5476 2473 73 13 0 chrX 34910160 34910460 -127689470 + AluSp SINE Alu 1 304 -9 1141 87 0 0 chrX 34910863 34911001 -127688929 - AluSq/x SINE Alu -175 138 1 2426 75 3 0 chrX 34911699 34911993 -127687937 - AluSp SINE Alu -5 308 14 2500 74 0 3 chrX 34912109 34912421 -127687509 + AluY SINE Alu 1 311 0 2084 114 0 71 chrX 34912437 34912762 -127687168 - AluSx SINE Alu -10 302 1 2374 87 0 7 chrX 34913121 34913420 -127686510 + AluSx SINE Alu 1 297 -15 611 252 174 62 chrX 34913761 34914126 -127685804 + MLT1H1 LTR MaLR 70 493 -62 2320 107 0 3 chrX 34914126 34914435 -127685495 + AluSg SINE Alu 1 308 -2 611 252 174 62 chrX 34914435 34914505 -127685425 + MLT1H1 LTR MaLR 493 554 -1 1852 156 29 16 chrX 34914633 34914940 -127684990 + AluJb SINE Alu 2 312 0 2155 89 64 0 chrX 34915247 34915529 -127684401 - AluSx SINE Alu -12 300 1 669 213 0 0 chrX 34915884 34916006 -127683924 + FLAM_A SINE Alu 1 122 -11 2020 107 29 58 chrX 34916020 34916328 -127683602 + AluSq SINE Alu 3 301 -12 184 171 73 0 chrX 34916443 34916484 -127683446 + L2 LINE L2 3229 3272 0 2032 119 9 25 chrX 34916683 34917001 -127682929 + AluSq SINE Alu 1 313 0 2113 102 0 74 chrX 34917560 34917710 -127682220 + AluSx SINE Alu 1 116 -196 2365 107 0 0 chrX 34917710 34918019 -127681911 + AluSg SINE Alu 1 309 -1 2113 102 0 74 chrX 34918019 34918193 -127681737 + AluSx SINE Alu 116 301 -11 1139 127 6 0 chrX 34918330 34918496 -127681434 + FRAM SINE Alu 4 170 -6 778 70 0 0 chrX 34918581 34918681 -127681249 + HY3 scRNA scRNA 1 100 -1 267 173 0 0 chrX 34918681 34918733 -127681197 + A-rich Low_complexity Low_complexity 1 52 0 2559 64 3 0 chrX 34918982 34919279 -127680651 + AluSp SINE Alu 1 298 -15 2421 94 0 0 chrX 34919302 34919599 -127680331 + AluSx SINE Alu 1 297 -15 3136 194 36 57 chrX 34919702 34920341 -127679589 - L1MD2 LINE L1 -115 6244 5593 585 165 0 0 chrX 34920341 34920432 -127679498 + AluJb SINE Alu 13 103 -209 240 86 0 0 chrX 34920434 34920469 -127679461 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 1654 127 141 14 chrX 34920469 34920745 -127679185 + AluSx SINE Alu 2 312 0 3136 194 36 57 chrX 34920745 34921028 -127678902 - L1MD2 LINE L1 -765 5594 5301 1376 106 0 0 chrX 34921037 34921217 -127678713 - AluSp SINE Alu -4 309 130 680 156 57 0 chrX 34921217 34921357 -127678573 - L1MD2 LINE L1 -856 5290 5148 1859 154 6 35 chrX 34921396 34921715 -127678215 + AluJo SINE Alu 1 310 -2 444 271 62 23 chrX 34921784 34921913 -127678017 - L2 LINE L2 0 3313 3180 2288 102 3 0 chrX 34921913 34922206 -127677724 - AluSx SINE Alu -18 294 1 1219 143 9 29 chrX 34922969 34923179 -127676751 - AluSg/x SINE Alu -2 310 105 2428 88 0 0 chrX 34923208 34923505 -127676425 - AluSq SINE Alu -16 297 1 2083 104 18 0 chrX 34923906 34924184 -127675746 + AluSx SINE Alu 18 300 -12 2375 94 0 10 chrX 34925858 34926157 -127673773 - AluSx SINE Alu -10 302 7 872 140 52 0 chrX 34926290 34926426 -127673504 - FLAM_C SINE Alu 0 143 1 273 254 0 0 chrX 34926433 34926488 -127673442 - MIR SINE MIR -124 138 84 2366 105 0 16 chrX 34927059 34927374 -127672556 - AluSx SINE Alu -2 310 1 586 186 68 0 chrX 34927509 34927627 -127672303 + Charlie8 DNA MER1_type 87 212 -2205 2043 144 0 16 chrX 34927863 34928169 -127671761 + AluJo SINE Alu 1 301 -11 2255 103 7 7 chrX 34928254 34928555 -127671375 + AluSg SINE Alu 1 301 -9 332 136 0 0 chrX 34928640 34928694 -127671236 - MLT2D LTR ERVL 0 515 400 339 96 0 0 chrX 34928707 34928759 -127671171 + (GA)n Simple_repeat Simple_repeat 1 52 0 1978 137 27 48 chrX 34928761 34929044 -127670886 - MLT2D LTR ERVL -48 366 91 2488 82 3 0 chrX 34929044 34929348 -127670582 + AluSx SINE Alu 1 305 -7 1978 137 27 48 chrX 34929348 34929436 -127670494 - MLT2D LTR ERVL -323 91 3 2301 97 0 13 chrX 34929827 34930136 -127669794 - AluSq SINE Alu -7 306 2 240 56 0 0 chrX 34930138 34930174 -127669756 - AluJo SINE Alu -3 299 264 1294 145 16 0 chrX 34930174 34930360 -127669570 - AluJo SINE Alu -123 189 1 957 162 51 41 chrX 34930379 34930576 -127669354 - AluJo SINE Alu 0 312 114 887 168 24 24 chrX 34930616 34930783 -127669147 + FRAM SINE Alu 1 167 -9 2574 63 0 0 chrX 34930821 34931124 -127668806 + AluY SINE Alu 3 305 -6 2389 73 7 7 chrX 34931626 34931928 -127668002 + AluSp SINE Alu 1 302 -11 1128 101 7 0 chrX 34932546 34932695 -127667235 - AluSg/x SINE Alu -22 288 139 475 139 0 13 chrX 34932697 34932776 -127667154 - AluJ/FLAM SINE Alu -233 79 2 281 271 68 73 chrX 34932783 34932960 -127666970 - MIR SINE MIR -51 211 36 1119 49 7 7 chrX 34933150 34933293 -127666637 - AluY SINE Alu -168 143 1 2011 201 165 14 chrX 34933892 34934540 -127665390 + MER20B DNA MER1_type 27 772 -11 269 231 0 0 chrX 34934555 34934607 -127665323 - MIR SINE MIR -118 144 93 23 33 0 0 chrX 34935287 34935317 -127664613 + GC_rich Low_complexity Low_complexity 1 30 0 266 186 29 29 chrX 34935464 34935566 -127664364 + C-rich Low_complexity Low_complexity 1 102 0 201 162 0 0 chrX 34935794 34935831 -127664099 + A-rich Low_complexity Low_complexity 1 37 0 201 162 0 0 chrX 34937245 34937282 -127662648 + A-rich Low_complexity Low_complexity 1 37 0 1461 126 138 27 chrX 34940035 34940296 -127659634 + AluSg1 SINE Alu 14 303 -6 1018 88 7 0 chrX 34941176 34941312 -127658618 - AluSp/q SINE Alu -10 303 167 35 0 0 0 chrX 34942533 34942568 -127657362 + AT_rich Low_complexity Low_complexity 1 35 0 2334 90 17 0 chrX 34943442 34943742 -127656188 - AluSx SINE Alu -7 305 1 2243 91 3 10 chrX 34944520 34944818 -127655112 - AluSp SINE Alu -17 296 1 591 298 49 10 chrX 34946913 34947118 -127652812 - MER58A DNA MER1_type -10 214 2 2361 91 7 0 chrX 34947963 34948272 -127651658 - AluSp SINE Alu -2 311 1 2113 140 0 13 chrX 34949401 34949716 -127650214 - 7SLRNA srpRNA srpRNA -9 311 1 577 158 241 23 chrX 34949760 34949893 -127650037 + FAM SINE Alu 1 162 -13 246 313 0 0 chrX 34951194 34951277 -127648653 + (CAG)n Simple_repeat Simple_repeat 2 84 0 530 162 9 48 chrX 34954502 34954607 -127645323 + FLAM_A SINE Alu 21 121 -21 639 156 156 19 chrX 34955825 34955985 -127643945 + L1M4 LINE L1 5624 5805 -373 2171 83 7 50 chrX 34957010 34957310 -127642620 + AluY SINE Alu 1 287 -24 1769 134 73 11 chrX 34957344 34957619 -127642311 + AluSg SINE Alu 1 292 -18 255 61 0 0 chrX 34957632 34957665 -127642265 + (CA)n Simple_repeat Simple_repeat 2 34 0 4283 171 80 62 chrX 34957915 34958181 -127641749 - L1MD2 LINE L1 -34 6325 6065 1659 144 86 11 chrX 34958181 34958459 -127641471 - AluJb SINE Alu -13 299 1 4283 171 80 62 chrX 34958459 34958658 -127641272 - L1MD2 LINE L1 -294 6065 5871 2154 85 44 0 chrX 34958658 34958956 -127640974 - AluSx SINE Alu 0 310 1 4283 171 80 62 chrX 34958956 34959315 -127640615 - L1MD2 LINE L1 -488 5871 5520 1737 152 0 53 chrX 34959315 34959618 -127640312 - AluJb SINE Alu -24 288 2 4283 171 80 62 chrX 34959618 34959970 -127639960 - L1MD2 LINE L1 -839 5520 5133 2258 107 0 23 chrX 34959972 34960281 -127639649 - AluSx SINE Alu -10 302 1 2107 103 48 0 chrX 34960285 34960461 -127639469 - AluSc SINE Alu -3 306 109 180 0 0 0 chrX 34960461 34960481 -127639449 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2107 103 48 0 chrX 34960481 34960596 -127639334 - AluSc SINE Alu -200 109 1 1358 236 5 43 chrX 34960597 34960760 -127639170 - L1MD2 LINE L1 -1229 4917 4749 2339 108 3 0 chrX 34960760 34961066 -127638864 - AluSx SINE Alu -5 307 1 1358 236 5 43 chrX 34961066 34961300 -127638630 - L1MD2 LINE L1 -1397 4749 4535 1436 130 0 28 chrX 34961353 34961568 -127638362 - AluJo SINE Alu -103 209 1 2442 77 10 3 chrX 34961898 34962209 -127637721 - AluSp SINE Alu 0 313 1 2241 106 13 0 chrX 34962587 34962888 -127637042 - AluSq SINE Alu -8 305 1 2137 108 35 0 chrX 34963157 34963443 -127636487 + AluSx SINE Alu 1 296 -16 2157 40 44 74 chrX 34963524 34963820 -127636110 + AluY SINE Alu 1 287 -24 201 39 0 0 chrX 34963830 34963856 -127636074 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2125 92 0 0 chrX 34963928 34964189 -127635741 + AluSx SINE Alu 1 261 -51 374 131 34 91 chrX 34964291 34964467 -127635463 + T-rich Low_complexity Low_complexity 4 169 0 1523 121 8 24 chrX 34964546 34964795 -127635135 + AluY SINE Alu 59 303 -8 1206 113 0 0 chrX 34964795 34964954 -127634976 + AluSg/x SINE Alu 134 292 -20 38 0 0 0 chrX 34964954 34964992 -127634938 + AT_rich Low_complexity Low_complexity 1 38 0 2211 86 31 3 chrX 34965456 34965746 -127634184 - AluSp SINE Alu -15 298 1 266 248 128 28 chrX 34965807 34965916 -127634014 - MIR SINE MIR -48 214 95 211 71 48 0 chrX 34965940 34965982 -127633948 + (TA)n Simple_repeat Simple_repeat 2 45 0 2217 99 25 0 chrX 34966342 34966626 -127633304 - AluSx SINE Alu -21 291 1 2126 106 0 70 chrX 34966985 34967316 -127632614 + AluSq SINE Alu 1 308 -5 990 95 0 0 chrX 34967642 34967768 -127632162 - AluSg1 SINE Alu -183 126 1 1818 164 3 13 chrX 34967802 34968100 -127631830 - AluJb SINE Alu -16 296 2 2119 130 13 0 chrX 34968108 34968407 -127631523 - AluSq SINE Alu -10 303 1 1685 275 131 15 chrX 34968537 34969072 -127630858 + MER115 DNA AcHobo 97 693 0 465 203 43 51 chrX 34969273 34969411 -127630519 - MIR3 SINE MIR -45 163 27 1249 138 0 0 chrX 34970567 34970734 -127629196 - AluSq SINE Alu -146 167 1 882 196 0 0 chrX 34970891 34971034 -127628896 - AluJb SINE Alu -33 279 137 2299 106 0 3 chrX 34971222 34971524 -127628406 + AluSc SINE Alu 1 301 -8 337 126 5 0 chrX 34971718 34971782 -127628148 - Alu SINE Alu -256 44 1 359 276 110 76 chrX 34971883 34972075 -127627855 + L2 LINE L2 2379 2584 -730 2479 88 0 0 chrX 34972075 34972380 -127627550 - AluSq SINE Alu -8 305 1 359 276 110 76 chrX 34972380 34972451 -127627479 + L2 LINE L2 2584 2651 -663 348 243 112 0 chrX 34972545 34972652 -127627278 + L2 LINE L2 2949 3067 -246 2177 126 3 0 chrX 34973135 34973429 -127626501 + AluSx SINE Alu 1 295 -17 2508 74 3 0 chrX 34973493 34973803 -127626127 + AluSp SINE Alu 1 311 -2 278 200 111 33 chrX 34974025 34974115 -127625815 + MLT1L LTR MaLR 30 126 -489 592 90 0 0 chrX 34974531 34974609 -127625321 + AluJ/FLAM SINE Alu 2 79 -233 465 234 95 0 chrX 34974613 34974750 -127625180 + L1MC5 LINE L1 7741 7890 -71 2282 100 0 19 chrX 34974810 34975120 -127624810 - AluSx SINE Alu -8 304 1 2039 147 0 0 chrX 34975120 34975427 -127624503 - AluJo SINE Alu -5 307 1 360 302 45 45 chrX 34975703 34975945 -127623985 + L2 LINE L2 2508 2749 -565 2322 95 3 0 chrX 34975990 34976285 -127623645 - AluSx SINE Alu -16 296 1 1804 141 0 49 chrX 34976293 34976598 -127623332 - AluJo SINE Alu -22 290 1 225 224 26 129 chrX 34976635 34976701 -127623229 - L1ME3A LINE L1 -97 6073 6022 2258 116 0 0 chrX 34976701 34977002 -127622928 + AluSx SINE Alu 1 301 -11 225 224 26 129 chrX 34977002 34977051 -127622879 - L1ME3A LINE L1 -148 6022 5970 402 193 62 90 chrX 34977115 34977156 -127622774 - L1M3 LINE L1 -343 5819 5778 2277 88 0 0 chrX 34977156 34977467 -127622463 - AluSx SINE Alu 0 311 1 402 193 62 90 chrX 34977467 34977569 -127622361 - L1M3 LINE L1 -384 5778 5684 305 185 62 25 chrX 34977562 34977643 -127622287 - L1MC5 LINE L1 -45 7916 7833 * 207 376 6 30 chrX 34977668 34977833 -127622097 - MER5B DNA MER1_type -17 161 1 2098 90 0 63 chrX 34977920 34978264 -127621666 - AluSx SINE Alu 0 325 1 706 169 22 37 chrX 34978266 34978402 -127621528 - FLAM_C SINE Alu -8 135 2 218 245 112 20 chrX 34978419 34978517 -127621413 + L2 LINE L2 2847 2953 -319 2421 103 0 0 chrX 34978519 34978830 -127621100 - AluSx SINE Alu -1 311 1 3303 203 75 39 chrX 34978962 34979508 -127620422 - L1ME1 LINE L1 0 6560 6035 2325 106 0 0 chrX 34979508 34979810 -127620120 - AluSx SINE Alu -10 302 1 3303 203 75 39 chrX 34979810 34980200 -127619730 - L1ME1 LINE L1 -525 6035 5661 572 147 0 0 chrX 34980200 34980295 -127619635 - AluJo/FRAM SINE Alu -9 303 209 1856 150 10 7 chrX 34980202 34980502 -127619428 - AluJo SINE Alu -11 301 1 3303 203 75 39 chrX 34980502 34980606 -127619324 - L1ME1 LINE L1 -1106 5454 5480 2045 149 7 0 chrX 34980606 34980907 -127619023 - AluJb SINE Alu -9 303 1 1075 221 59 18 chrX 34980911 34981250 -127618680 - L1ME1 LINE L1 -2640 3900 3548 2412 99 3 6 chrX 34981255 34981569 -127618361 - AluSq SINE Alu 0 313 1 1314 116 0 0 chrX 34981578 34981800 -127618130 + AluSg/x SINE Alu 118 310 0 2408 235 34 24 chrX 34981800 34982053 -127617877 + L1M4 LINE L1 2354 2603 -3543 2330 92 0 16 chrX 34982053 34982359 -127617571 + AluSg SINE Alu 1 301 -9 2408 235 34 24 chrX 34982359 34982777 -127617153 + L1M4 LINE L1 2603 3035 -3111 2362 88 0 19 chrX 34982777 34983094 -127616836 + AluSq SINE Alu 2 312 -1 1010 217 26 15 chrX 34983094 34983361 -127616569 - L1ME1 LINE L1 -4425 2115 1846 2153 115 0 14 chrX 34983383 34983698 -127616232 + AluSx SINE Alu 1 311 0 247 269 0 64 chrX 34983699 34983777 -127616153 - L2 LINE L2 -18 3295 3223 1984 162 0 10 chrX 34983918 34984246 -127615684 - AluJo SINE Alu 0 312 1 1756 174 31 62 chrX 34984277 34984661 -127615269 + MLT1A2 LTR MaLR 3 374 0 2416 88 0 0 chrX 34985249 34985546 -127614384 - AluSx SINE Alu -15 297 1 973 120 0 0 chrX 34985815 34985948 -127613982 - AluJb SINE Alu -179 133 1 2444 115 0 0 chrX 34985956 34986268 -127613662 - AluSx SINE Alu 0 312 1 2427 85 0 0 chrX 34986868 34987161 -127612769 - AluSg SINE Alu -17 293 1 2471 88 0 0 chrX 34987344 34987640 -127612290 + AluSg SINE Alu 1 296 -14 184 293 65 49 chrX 34988133 34988256 -127611674 + L3b LINE CR1 1318 1442 -141 2216 131 0 6 chrX 34988257 34988571 -127611359 - AluSx SINE Alu 0 312 1 1314 220 75 13 chrX 34988680 34989053 -127610877 + L1ME3A LINE L1 5587 5982 -188 192 97 0 0 chrX 34989066 34989097 -127610833 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2145 117 0 4 chrX 34989100 34989381 -127610549 - AluSg SINE Alu -30 280 1 487 256 31 25 chrX 34989490 34989650 -127610280 - L1ME3 LINE L1 -4 6158 6000 2072 109 11 18 chrX 34989938 34990116 -127609814 - AluSx SINE Alu 0 314 137 2465 70 3 0 chrX 34990116 34990414 -127609516 - AluY SINE Alu -12 299 1 2072 109 11 18 chrX 34990414 34990551 -127609379 - AluSx SINE Alu -177 137 1 2425 91 3 0 chrX 34991021 34991330 -127608600 - AluSp SINE Alu -3 310 1 2261 86 10 3 chrX 34991331 34991621 -127608309 - AluSg SINE Alu -18 292 1 2604 37 3 0 chrX 34992087 34992387 -127607543 + AluY SINE Alu 1 301 -10 2270 99 10 0 chrX 34992390 34992692 -127607238 + AluSq SINE Alu 1 305 -8 222 62 0 0 chrX 34993391 34993423 -127606507 + (A)n Simple_repeat Simple_repeat 1 32 0 2340 72 0 17 chrX 34993837 34994128 -127605802 - AluSx SINE Alu -19 293 8 243 0 0 0 chrX 34994130 34994157 -127605773 + (T)n Simple_repeat Simple_repeat 1 27 0 384 196 78 10 chrX 34994520 34994622 -127605308 + L1MB8 LINE L1 5468 5576 -602 1159 22 0 29 chrX 34994623 34994760 -127605170 + SVA Other Other 1254 1386 0 506 137 12 2 chrX 34994760 34994856 -127605074 + L1MB8 LINE L1 5574 5669 -514 1852 122 10 59 chrX 34994861 34995165 -127604765 + AluSx SINE Alu 12 300 -12 1322 159 92 131 chrX 34995168 34995318 -127604612 - MER4C LTR ERV1 -17 448 294 1883 144 0 11 chrX 34995318 34995453 -127604477 + AluJb SINE Alu 1 136 -196 2292 101 7 0 chrX 34995453 34995751 -127604179 + AluSg SINE Alu 1 300 -10 1883 144 0 11 chrX 34995751 34995950 -127603980 + AluJb SINE Alu 136 332 0 2073 136 0 13 chrX 34995958 34996285 -127603645 + AluSx SINE Alu 1 323 0 1322 159 92 131 chrX 34996285 34996587 -127603343 - MER4C LTR ERV1 -178 287 2 617 147 54 0 chrX 34996588 34996717 -127603213 + L1MB8 LINE L1 5638 5773 -405 878 127 6 53 chrX 34996725 34996901 -127603029 + LTR23 LTR ERV1 59 242 -195 1950 109 0 91 chrX 34996901 34997230 -127602700 + AluSx SINE Alu 1 299 -13 878 127 6 53 chrX 34997230 34997372 -127602558 + LTR23 LTR ERV1 242 437 0 818 179 21 26 chrX 34997372 34997562 -127602368 + L1MB8 LINE L1 5749 5937 -241 1244 120 0 11 chrX 34997562 34997745 -127602185 + AluSg/x SINE Alu 132 312 0 185 399 44 6 chrX 34997816 34997974 -127601956 - L2 LINE L2 -608 2706 2543 2466 183 83 26 chrX 34998016 34998289 -127601641 - LTR39 LTR ERV1 -2 781 525 2493 80 0 3 chrX 34998289 34998602 -127601328 - AluSx SINE Alu 0 312 1 2466 183 83 26 chrX 34998602 34998868 -127601062 - LTR39 LTR ERV1 -258 525 211 929 184 0 0 chrX 34998895 34999058 -127600872 - AluJb SINE Alu -2 310 148 289 333 20 0 chrX 34999060 34999162 -127600768 + MIR SINE MIR 105 208 -54 4201 62 5 58 chrX 35000079 35000224 -127599706 + MER41A LTR ERV1 1 152 -402 2284 110 0 3 chrX 35000224 35000534 -127599396 + AluSc SINE Alu 1 309 0 4201 62 5 58 chrX 35000534 35000898 -127599032 + MER41A LTR ERV1 152 478 -76 2462 77 7 0 chrX 35000898 35001195 -127598735 - AluSg SINE Alu -10 300 2 4201 62 5 58 chrX 35001195 35001269 -127598661 + MER41A LTR ERV1 478 554 0 333 68 0 0 chrX 35002328 35002372 -127597558 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2165 86 45 3 chrX 35002447 35002738 -127597192 + AluSx SINE Alu 1 303 -9 1336 99 0 76 chrX 35002762 35002973 -127596957 + AluJo SINE Alu 116 310 -2 1472 116 0 5 chrX 35003191 35003389 -127596541 - AluSx SINE Alu -115 197 1 1039 162 0 20 chrX 35003390 35003588 -127596342 + L1MB3 LINE L1 5819 6012 -171 1172 140 0 11 chrX 35003591 35003637 -127596293 - AluSp SINE Alu -134 179 134 2438 78 0 3 chrX 35003637 35003933 -127595997 - AluSx SINE Alu -17 295 1 1172 140 0 11 chrX 35003933 35004065 -127595865 - AluSp SINE Alu -179 134 3 900 211 30 17 chrX 35004065 35004297 -127595633 + LTR16C LTR ERVL 257 491 0 1895 160 7 10 chrX 35004667 35004955 -127594975 - AluSx SINE Alu -25 287 1 1399 147 9 5 chrX 35004965 35005183 -127594747 - AluJb SINE Alu -9 303 85 2298 104 0 0 chrX 35005198 35005497 -127594433 - AluSx SINE Alu -13 299 1 207 0 0 0 chrX 35005549 35005572 -127594358 + (CAA)n Simple_repeat Simple_repeat 2 24 0 234 172 0 65 chrX 35005812 35005891 -127594039 + CT-rich Low_complexity Low_complexity 3 77 -12 1930 172 0 0 chrX 35005891 35006182 -127593748 - AluJb SINE Alu -21 291 1 234 172 0 65 chrX 35006182 35006195 -127593735 + CT-rich Low_complexity Low_complexity 77 89 0 2254 112 10 0 chrX 35006213 35006518 -127593412 + AluSx SINE Alu 1 308 -4 2264 94 0 3 chrX 35006906 35007214 -127592716 - AluSx SINE Alu 0 308 2 350 224 37 161 chrX 35007224 35007354 -127592576 - L1MC/D LINE L1 -2211 5597 5453 2605 201 51 34 chrX 35007354 35007548 -127592382 - MLT1E3 LTR MaLR -3 621 432 1876 153 32 23 chrX 35007548 35007580 -127592350 - AluSx SINE Alu -1 311 281 297 0 0 0 chrX 35007580 35007613 -127592317 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1876 153 32 23 chrX 35007613 35007888 -127592042 - AluSx SINE Alu -31 281 1 2605 201 51 34 chrX 35007888 35008304 -127591626 - MLT1E3 LTR MaLR -192 432 1 350 224 37 161 chrX 35008304 35008358 -127591572 - L1MC/D LINE L1 -2355 5453 5394 2291 112 0 3 chrX 35008358 35008663 -127591267 - AluSq SINE Alu -9 304 1 350 224 37 161 chrX 35008663 35008783 -127591147 - L1MC/D LINE L1 -2414 5394 5337 1717 146 73 0 chrX 35008783 35009058 -127590872 - AluJo SINE Alu -14 298 4 350 224 37 161 chrX 35009058 35009099 -127590831 - L1MC/D LINE L1 -2471 5337 5293 2244 100 0 0 chrX 35009132 35009413 -127590517 + AluSq SINE Alu 1 281 -32 207 0 0 0 chrX 35009414 35009437 -127590493 + (TC)n Simple_repeat Simple_repeat 1 23 0 1193 115 23 17 chrX 35009449 35009623 -127590307 + AluSg/x SINE Alu 127 301 -11 2234 115 17 0 chrX 35009790 35010086 -127589844 - AluSx SINE Alu -11 301 1 2177 95 28 0 chrX 35010114 35010397 -127589533 + AluSx SINE Alu 1 291 -21 211 71 48 0 chrX 35010757 35010799 -127589131 + (TA)n Simple_repeat Simple_repeat 2 45 0 316 233 150 38 chrX 35010799 35010932 -127588998 + MIR SINE MIR 67 214 -48 2223 89 31 3 chrX 35010993 35011285 -127588645 + AluSp SINE Alu 1 300 -13 38 0 0 0 chrX 35011749 35011787 -127588143 + AT_rich Low_complexity Low_complexity 1 38 0 2142 99 0 40 chrX 35011787 35011946 -127587984 - AluY SINE Alu -20 291 148 2588 51 0 19 chrX 35011946 35012257 -127587673 - AluY SINE Alu -6 305 1 2142 99 0 40 chrX 35012257 35012400 -127587530 - AluY SINE Alu -163 148 1 6887 78 15 5 chrX 35012402 35013549 -127586381 - L1PA10 LINE L1 -10 6158 5003 1973 117 36 4 chrX 35013621 35013932 -127585998 - AluSx SINE Alu 0 320 1 1681 151 0 82 chrX 35014167 35014325 -127585605 - AluJo SINE Alu -21 291 170 2201 124 0 3 chrX 35014325 35014623 -127585307 - AluSx SINE Alu -15 297 1 1681 151 0 82 chrX 35014623 35014781 -127585149 - AluJo SINE Alu -142 170 1 586 293 17 6 chrX 35016176 35016357 -127583573 - MIR SINE MIR -1 261 79 2402 79 16 7 chrX 35016589 35016894 -127583036 - AluSx SINE Alu -4 308 1 1893 126 66 140 chrX 35017180 35017222 -127582708 - MLT1D LTR MaLR 0 505 461 2406 82 3 3 chrX 35017222 35017525 -127582405 + AluSx SINE Alu 1 303 -9 1893 126 66 140 chrX 35017525 35017555 -127582375 - MLT1D LTR MaLR -44 461 430 852 181 0 0 chrX 35017555 35017688 -127582242 + FLAM_C SINE Alu 1 133 0 1893 126 66 140 chrX 35017688 35018114 -127581816 - MLT1D LTR MaLR -75 430 43 2510 260 54 19 chrX 35018858 35019451 -127580479 + Zaphod DNA AcHobo 1 629 -3402 327 25 0 0 chrX 35019451 35019491 -127580439 + (CA)n Simple_repeat Simple_repeat 2 41 0 2510 260 54 19 chrX 35019491 35019679 -127580251 + Zaphod DNA AcHobo 629 809 -3222 240 35 0 0 chrX 35019778 35019807 -127580123 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 1827 125 3 35 chrX 35019807 35020094 -127579836 - AluSq SINE Alu -35 278 1 422 213 0 0 chrX 35020315 35020395 -127579535 - L2 LINE L2 0 3313 3234 2188 86 0 40 chrX 35020691 35020857 -127579073 - LTR8 LTR ERV1 0 691 543 2447 65 3 0 chrX 35020857 35021149 -127578781 - AluSp SINE Alu -20 293 1 2188 86 0 40 chrX 35021149 35021308 -127578622 - LTR8 LTR ERV1 -148 543 379 1131 68 0 0 chrX 35021305 35021453 -127578477 - LTR8 LTR ERV1 -543 148 1 * 2170 114 37 0 chrX 35021496 35021616 -127578314 + AluSx SINE Alu 1 115 -197 188 0 74 0 chrX 35021616 35021643 -127578287 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2170 114 37 0 chrX 35021643 35021821 -127578109 + AluSx SINE Alu 115 310 -2 2166 114 0 0 chrX 35021856 35022137 -127577793 + AluSx SINE Alu 1 281 -31 1209 127 0 0 chrX 35021964 35022137 -127577793 + AluSg/x SINE Alu 109 304 0 208 0 0 0 chrX 35022137 35022160 -127577770 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 624 117 64 0 chrX 35022870 35022964 -127576966 - AluSg/x SINE Alu -9 301 202 1245 118 45 142 chrX 35022871 35023203 -127576727 - AluSx SINE Alu 0 302 3 2233 77 0 0 chrX 35023207 35023492 -127576438 - AluSp SINE Alu -11 302 18 550 141 190 74 chrX 35023515 35023683 -127576247 + Zaphod DNA AcHobo 551 758 -3273 1783 124 29 0 chrX 35023683 35023993 -127575937 + AluSx SINE Alu 2 319 0 550 141 190 74 chrX 35023993 35024065 -127575865 + Zaphod DNA AcHobo 758 820 -3211 930 151 60 60 chrX 35024065 35024218 -127575712 - L1MB3 LINE L1 -5 6178 6023 1677 171 56 9 chrX 35024218 35024540 -127575390 + MER1B DNA MER1_type 1 337 0 930 151 60 60 chrX 35024540 35024604 -127575326 - L1MB3 LINE L1 -159 6024 5961 2163 102 0 0 chrX 35024623 35024916 -127575014 - AluSg SINE Alu -13 297 5 2429 54 0 0 chrX 35024931 35025228 -127574702 - AluY SINE Alu -14 297 1 1670 165 7 3 chrX 35025252 35025543 -127574387 - AluJb SINE Alu -14 298 7 2202 116 0 0 chrX 35025624 35025934 -127573996 - AluSx SINE Alu -2 310 1 306 126 0 23 chrX 35025940 35026027 -127573903 + Zaphod DNA AcHobo 904 988 -3043 1161 174 143 78 chrX 35026028 35026347 -127573583 + Zaphod DNA AcHobo 3596 3893 -138 2126 108 0 13 chrX 35026347 35026653 -127573277 + AluSx SINE Alu 1 302 -10 2216 75 3 3 chrX 35026660 35026955 -127572975 + AluSq SINE Alu 5 299 -14 2142 46 7 11 chrX 35026956 35027261 -127572669 + AluY SINE Alu 1 304 0 1161 174 143 78 chrX 35027261 35027314 -127572616 + Zaphod DNA AcHobo 3897 4004 -27 746 144 81 23 chrX 35027324 35027498 -127572432 + MER53 DNA DNA 3 186 -3 339 302 78 62 chrX 35027605 35027806 -127572124 - L1ME3A LINE L1 -1 6169 5958 1908 101 61 4 chrX 35027806 35028083 -127571847 - AluSp SINE Alu -19 294 2 339 302 78 62 chrX 35028083 35028268 -127571662 - L1ME3A LINE L1 -212 5958 5777 900 167 0 0 chrX 35028271 35028415 -127571515 - FRAM SINE Alu -20 156 13 352 275 0 3 chrX 35028429 35028528 -127571402 - L1MB3 LINE L1 -384 5786 5689 2078 101 27 3 chrX 35028530 35028828 -127571102 - AluSx SINE Alu -7 305 1 323 284 11 33 chrX 35029831 35029858 -127570072 + L1P5 LINE L1 5254 5280 -876 2181 108 0 3 chrX 35029858 35030165 -127569765 - AluSx SINE Alu -5 307 2 323 284 11 33 chrX 35030165 35030320 -127569610 + L1P5 LINE L1 5280 5432 -724 2087 123 0 3 chrX 35030329 35030631 -127569299 + AluY SINE Alu 1 301 -10 338 169 0 0 chrX 35030636 35030695 -127569235 + L1ME3A LINE L1 5742 5800 -364 1158 238 83 17 chrX 35030766 35031128 -127568802 + L1ME3A LINE L1 5785 6170 0 2329 164 20 69 chrX 35031715 35032075 -127567855 + Charlie1b DNA MER1_type 1 377 -2384 1717 143 0 21 chrX 35032075 35032388 -127567542 - AluJo SINE Alu 0 308 2 2329 164 20 69 chrX 35032388 35032428 -127567502 + Charlie1b DNA MER1_type 377 417 -2344 2072 104 6 28 chrX 35032428 35032745 -127567185 - AluSx SINE Alu -2 310 1 2329 164 20 69 chrX 35032745 35032892 -127567038 + Charlie1b DNA MER1_type 417 523 0 801 222 27 69 chrX 35032912 35033064 -127566866 - L1MD3 LINE L1 -16 7979 7841 2242 94 0 0 chrX 35033064 35033361 -127566569 - AluSx SINE Alu -15 297 1 801 222 27 69 chrX 35033361 35033469 -127566461 - L1MD3 LINE L1 -154 7841 7730 1104 58 0 0 chrX 35033611 35033750 -127566180 + Tigger2 DNA MER2_type 2391 2529 -189 2342 70 0 0 chrX 35033760 35034059 -127565871 + AluY SINE Alu 1 299 -12 792 165 8 0 chrX 35034075 35034202 -127565728 + FLAM_C SINE Alu 6 133 -10 883 211 113 153 chrX 35034209 35034436 -127565494 + L1MC5 LINE L1 6906 7141 -820 2033 97 0 31 chrX 35034436 35034748 -127565182 - AluSg SINE Alu 0 306 4 1708 163 3 7 chrX 35034750 35035039 -127564891 - AluJo SINE Alu -23 289 2 2100 102 17 0 chrX 35035045 35035340 -127564590 - AluSx SINE Alu -12 300 1 883 211 113 153 chrX 35035340 35035457 -127564473 + L1MC5 LINE L1 7147 7267 -694 652 176 67 0 chrX 35035457 35035576 -127564354 - FLAM_A SINE Alu -6 127 1 883 211 113 153 chrX 35035576 35035711 -127564219 + L1MC5 LINE L1 7267 7406 -555 2345 80 3 0 chrX 35035711 35036013 -127563917 + AluSp SINE Alu 1 303 -10 883 211 113 153 chrX 35036013 35036089 -127563841 + L1MC5 LINE L1 7406 7483 -478 2233 92 6 13 chrX 35036089 35036404 -127563526 + AluSq SINE Alu 1 313 0 883 211 113 153 chrX 35036404 35036685 -127563245 + L1MC5 LINE L1 7483 7708 -253 10577 22 0 0 chrX 35036685 35038668 -127561262 - L1PA3 LINE L1 -3 6152 4170 883 211 113 153 chrX 35038668 35038870 -127561060 + L1MC5 LINE L1 7708 7917 -44 2154 80 4 0 chrX 35038894 35039168 -127560762 + AluSp SINE Alu 1 275 -38 1676 122 0 99 chrX 35040760 35040990 -127558940 - AluJo SINE Alu -1 311 125 2057 131 0 0 chrX 35040990 35041295 -127558635 + AluSx SINE Alu 1 305 -7 1676 122 0 99 chrX 35041295 35041409 -127558521 - AluJo SINE Alu -187 125 1 1587 104 49 139 chrX 35041617 35041822 -127558108 - Charlie1b DNA MER1_type -2239 522 300 1975 133 0 31 chrX 35041822 35042139 -127557791 - AluSx SINE Alu -5 307 1 1587 104 49 139 chrX 35042139 35042409 -127557521 - Charlie1b DNA MER1_type -2461 300 78 854 131 0 0 chrX 35042411 35042533 -127557397 + FLAM_C SINE Alu 1 122 -11 227 114 23 0 chrX 35042533 35042577 -127557353 + (TA)n Simple_repeat Simple_repeat 2 46 0 329 258 0 0 chrX 35042578 35042667 -127557263 + L1MC4 LINE L1 6615 6703 -1339 427 256 12 0 chrX 35042672 35042758 -127557172 - Charlie1b DNA MER1_type -435 88 2 737 249 136 89 chrX 35042793 35043287 -127556643 - MLT1L LTR MaLR -91 524 8 2248 91 7 0 chrX 35043478 35043775 -127556155 - AluSp SINE Alu -14 299 1 1845 124 18 3 chrX 35044136 35044419 -127555511 - AluSq SINE Alu -26 287 1 1915 132 0 13 chrX 35044632 35044957 -127554973 - AluJb SINE Alu 0 312 1 2123 92 0 3 chrX 35045073 35045390 -127554540 + AluSp SINE Alu 1 316 0 1855 88 19 8 chrX 35045461 35045722 -127554208 - L1PA8A LINE L1 -4 6127 5864 1069 177 60 4 chrX 35045741 35045983 -127553947 - LTR54B LTR ERV1 -1 497 242 253 154 0 0 chrX 35045983 35046022 -127553908 - MSTD LTR MaLR 0 457 419 984 180 267 16 chrX 35046022 35046105 -127553825 + MSTC LTR MaLR 1 62 -366 1957 138 0 3 chrX 35046105 35046401 -127553529 + AluSx SINE Alu 1 295 -17 984 180 267 16 chrX 35046401 35046628 -127553302 + MSTC LTR MaLR 62 389 -39 536 133 12 0 chrX 35046629 35046712 -127553218 + AluJ/FLAM SINE Alu 2 85 -227 * 757 115 0 0 chrX 35046704 35046853 -127553077 + AluSp/q SINE Alu 181 329 0 345 137 0 0 chrX 35046872 35046923 -127553007 + MSTC LTR MaLR 407 457 0 812 206 147 71 chrX 35046927 35047165 -127552765 - MSTD LTR MaLR -38 358 103 705 137 62 62 chrX 35047160 35047321 -127552609 - LTR54 LTR ERV1 -349 161 1 * 2101 126 7 0 chrX 35047996 35048306 -127551624 + AluSx SINE Alu 1 312 0 2125 136 0 0 chrX 35048336 35048645 -127551285 + AluSx SINE Alu 1 309 -3 1966 105 0 71 chrX 35048646 35048969 -127550961 - AluSx SINE Alu -12 300 1 696 346 90 17 chrX 35049062 35049530 -127550400 + L1M4 LINE L1 2121 2622 -3524 24 0 0 0 chrX 35049853 35049877 -127550053 + AT_rich Low_complexity Low_complexity 1 24 0 2101 96 20 10 chrX 35049884 35050177 -127549753 + AluSx SINE Alu 5 300 -12 685 203 0 14 chrX 35050177 35050309 -127549621 - L1MB3 LINE L1 -63 6120 5991 253 263 53 0 chrX 35050310 35050386 -127549544 + MLT1K LTR MaLR 509 588 0 343 54 87 0 chrX 35050399 35050491 -127549439 + (TA)n Simple_repeat Simple_repeat 2 101 0 324 281 100 96 chrX 35050495 35050960 -127548970 - L1MEd LINE L1 -4875 1244 802 1977 144 3 0 chrX 35051011 35051310 -127548620 + AluSq SINE Alu 4 303 -10 1798 166 0 13 chrX 35051318 35051632 -127548298 + AluJb SINE Alu 2 311 -1 914 103 0 0 chrX 35051666 35051792 -127548138 + AluSg1 SINE Alu 1 126 -183 391 155 0 28 chrX 35051815 35051886 -127548044 - Tigger2 DNA MER2_type -2649 69 1 535 201 39 71 chrX 35053044 35053198 -127546732 + MIR3 SINE MIR 15 163 -45 1705 277 131 15 chrX 35053399 35053934 -127545996 - MER115 DNA AcHobo 0 693 97 2162 85 0 0 chrX 35054064 35054388 -127545542 + AluSx SINE Alu 1 324 0 927 125 0 0 chrX 35054700 35054836 -127545094 + AluSq SINE Alu 87 222 -91 1970 141 0 10 chrX 35054972 35055276 -127544654 + AluSx SINE Alu 1 301 -11 383 221 111 87 chrX 35056271 35056340 -127543590 - MER5A DNA MER1_type 0 189 123 2237 65 37 7 chrX 35056340 35056634 -127543296 + AluSc SINE Alu 1 303 -6 383 221 111 87 chrX 35056634 35056736 -127543194 - MER5A DNA MER1_type -66 123 14 204 143 0 24 chrX 35057077 35057119 -127542811 + (CTGGGG)n Simple_repeat Simple_repeat 1 41 0 2418 51 0 0 chrX 35058228 35058524 -127541406 - AluY SINE Alu -6 305 10 2120 112 6 6 chrX 35058539 35058851 -127541079 - AluSx SINE Alu 0 312 1 1974 117 20 0 chrX 35060259 35060558 -127539372 - AluSx SINE Alu -3 309 5 233 155 155 0 chrX 35060582 35060640 -127539290 + L1ME1 LINE L1 5406 5472 -702 1149 121 0 0 chrX 35060640 35060805 -127539125 - AluSg/x SINE Alu -15 297 133 1224 149 103 70 chrX 35060822 35061124 -127538806 - AluSx SINE Alu 0 312 1 2454 183 98 75 chrX 35061125 35061514 -127538416 + L1ME1 LINE L1 5458 5836 -498 2012 120 0 0 chrX 35061514 35061805 -127538125 - AluSx SINE Alu -21 291 1 2454 183 98 75 chrX 35061805 35061970 -127537960 + L1ME1 LINE L1 5836 5996 -338 1689 132 8 4 chrX 35061970 35062235 -127537695 - AluJb SINE Alu -17 295 30 2454 183 98 75 chrX 35062235 35062381 -127537549 + L1ME1 LINE L1 5996 6334 0 416 233 59 15 chrX 35062467 35062618 -127537312 - L1ME2 LINE L1 -297 5867 5716 2163 125 0 0 chrX 35063435 35063747 -127536183 - AluSx SINE Alu 0 312 1 1128 203 18 0 chrX 35063747 35063964 -127535966 - L1MB2 LINE L1 -345 5826 5606 850 191 13 6 chrX 35064035 35064192 -127535738 - MER5B DNA MER1_type -3 175 18 2110 100 3 3 chrX 35064312 35064602 -127535328 - AluSg SINE Alu -20 290 1 1866 161 0 0 chrX 35064607 35064898 -127535032 - AluJb SINE Alu -44 268 1 202 222 0 0 chrX 35065029 35065074 -127534856 - MIR SINE MIR -107 155 111 2456 96 0 3 chrX 35065085 35065398 -127534532 - AluSx SINE Alu 0 312 1 1781 118 12 4 chrX 35066047 35066293 -127533637 + AluSx SINE Alu 1 248 -64 752 286 173 30 chrX 35066378 35066847 -127533083 - LTR67 LTR ERVL -2 555 20 2220 130 16 50 chrX 35066851 35067017 -127532913 + MLT1A1 LTR MaLR 1 171 -194 2379 83 7 3 chrX 35067017 35067318 -127532612 + AluSq SINE Alu 1 302 -11 2220 130 16 50 chrX 35067318 35067529 -127532401 + MLT1A1 LTR MaLR 171 365 0 205 359 0 58 chrX 35067833 35067882 -127532048 - MIR3 SINE MIR -10 198 157 1904 185 109 0 chrX 35067882 35068239 -127531691 - MSTD LTR MaLR 0 396 1 205 359 0 58 chrX 35068239 35068292 -127531638 - MIR3 SINE MIR -51 157 102 303 323 97 26 chrX 35068338 35068461 -127531469 + MIR SINE MIR 94 232 -30 2243 101 0 24 chrX 35068461 35068758 -127531172 - AluSx SINE Alu -22 290 1 303 323 97 26 chrX 35068758 35068789 -127531141 + MIR SINE MIR 232 259 -3 2269 87 0 11 chrX 35068789 35069098 -127530832 + AluSx SINE Alu 1 306 0 2455 106 0 0 chrX 35069328 35069640 -127530290 + AluSx SINE Alu 1 312 0 1996 183 117 16 chrX 35069649 35070152 -127529778 - L1ME2 LINE L1 -249 5915 5351 2260 113 3 10 chrX 35070152 35070462 -127529468 - AluSq SINE Alu -5 308 1 1996 183 117 16 chrX 35070462 35070504 -127529426 - L1ME2 LINE L1 -813 5351 5315 24 0 0 0 chrX 35070504 35070528 -127529402 + AT_rich Low_complexity Low_complexity 1 24 0 777 163 54 134 chrX 35070618 35070980 -127528950 - L1ME1 LINE L1 -21 6226 5877 5508 80 16 12 chrX 35071013 35071374 -127528556 - L1PB1 LINE L1 -1 6150 5792 207 0 0 0 chrX 35071374 35071397 -127528533 + (TA)n Simple_repeat Simple_repeat 2 24 0 5508 80 16 12 chrX 35071397 35071787 -127528143 - L1PB1 LINE L1 -359 5792 5393 2509 82 0 0 chrX 35071787 35072091 -127527839 - AluSg SINE Alu -6 304 1 5508 80 16 12 chrX 35072091 35072146 -127527784 - L1PB1 LINE L1 -758 5393 5340 1362 188 110 0 chrX 35072144 35072453 -127527477 - L1ME1 LINE L1 -337 5898 5556 * 746 216 17 11 chrX 35072455 35072631 -127527299 - MLT1A1 LTR MaLR 0 365 189 1629 188 50 35 chrX 35072632 35073175 -127526755 - L1ME1 LINE L1 -682 5553 5014 680 248 51 9 chrX 35073179 35073393 -127526537 - L1ME1 LINE L1 -4333 2063 1841 2445 70 0 7 chrX 35073414 35073712 -127526218 - AluSc SINE Alu -13 296 1 1115 68 7 20 chrX 35073714 35073861 -127526069 - AluSq/x SINE Alu -168 145 1 803 236 28 31 chrX 35073866 35074120 -127525810 - L1ME1 LINE L1 -4576 1820 1568 691 156 13 27 chrX 35074121 35074137 -127525793 - MLT1A1 LTR MaLR -222 152 137 1935 160 24 0 chrX 35074137 35074430 -127525500 - AluJb SINE Alu -12 300 1 691 156 13 27 chrX 35074430 35074566 -127525364 - MLT1A1 LTR MaLR -237 137 2 249 33 0 0 chrX 35074658 35074688 -127525242 + (TG)n Simple_repeat Simple_repeat 2 31 0 785 267 72 74 chrX 35074711 35075465 -127524465 - L1ME1 LINE L1 -5052 1344 593 1797 127 58 34 chrX 35075523 35075814 -127524116 - AluSx SINE Alu -14 298 1 399 304 58 88 chrX 35075827 35076139 -127523791 - L1ME1 LINE L1 -5552 653 333 1800 150 37 17 chrX 35076139 35076439 -127523491 + AluJb SINE Alu 1 306 -6 399 304 58 88 chrX 35076439 35076553 -127523377 - L1ME1 LINE L1 -5872 333 217 1672 88 0 44 chrX 35076553 35076780 -127523150 - AluSq SINE Alu -15 298 82 2349 98 0 25 chrX 35076780 35077095 -127522835 - AluSq SINE Alu -5 308 1 399 304 58 88 chrX 35077095 35077180 -127522750 - L1ME1 LINE L1 -5986 219 155 22 35 0 0 chrX 35077202 35077231 -127522699 + AT_rich Low_complexity Low_complexity 1 29 0 181 0 0 65 chrX 35077331 35077362 -127522568 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2225 100 0 0 chrX 35077364 35077643 -127522287 - AluSx SINE Alu -31 281 3 2033 144 0 13 chrX 35077651 35077950 -127521980 - AluJo SINE Alu -17 295 1 2301 104 7 0 chrX 35078282 35078581 -127521349 - AluSx SINE Alu -11 301 1 225 268 14 28 chrX 35078629 35078700 -127521230 - L2 LINE L2 -2 3270 3201 2485 90 0 0 chrX 35079539 35079838 -127520092 - AluSx SINE Alu -13 299 1 1445 176 46 3 chrX 35080245 35080403 -127519527 - MER33 DNA MER1_type -2270 315 165 2395 86 3 7 chrX 35080403 35080705 -127519225 + AluSx SINE Alu 1 301 -11 1445 176 46 3 chrX 35080705 35080848 -127519082 - MER33 DNA MER1_type -2420 165 1 4240 59 10 29 chrX 35080928 35081102 -127518828 - PABL_A LTR ERV1 0 660 484 2211 110 0 23 chrX 35081102 35081403 -127518527 - AluSq SINE Alu -19 294 1 4240 59 10 29 chrX 35081403 35081807 -127518123 - PABL_A LTR ERV1 -176 484 93 24 32 0 0 chrX 35081809 35081840 -127518090 + AT_rich Low_complexity Low_complexity 1 31 0 2188 88 3 0 chrX 35082782 35083089 -127516841 - AluSx SINE Alu 0 308 1 655 71 0 0 chrX 35083089 35083174 -127516756 - PABL_A LTR ERV1 -575 85 1 183 80 0 0 chrX 35085176 35085201 -127514729 + (TCCCC)n Simple_repeat Simple_repeat 1 25 0 519 149 0 74 chrX 35085582 35085703 -127514227 + MER103 DNA DNA 8 119 -47 2426 90 0 0 chrX 35086416 35086715 -127513215 + AluSg SINE Alu 1 299 -11 2445 68 3 0 chrX 35086748 35087042 -127512888 - AluSp SINE Alu -18 295 1 1869 160 3 31 chrX 35087195 35087514 -127512416 + AluJb SINE Alu 1 310 -2 363 151 38 184 chrX 35087516 35087580 -127512350 - MER112 DNA MER1_type -102 158 86 2289 86 0 3 chrX 35087580 35087871 -127512059 - AluSg SINE Alu -19 291 2 363 151 38 184 chrX 35087871 35087991 -127511939 - MER112 DNA MER1_type -174 86 1 471 188 115 12 chrX 35088009 35088174 -127511756 - L1MC4 LINE L1 0 8042 7861 629 157 9 28 chrX 35088174 35088282 -127511648 + FRAM SINE Alu 58 163 -13 1086 236 40 88 chrX 35089050 35089299 -127510631 - MLT1I LTR MaLR 0 409 150 2650 59 0 0 chrX 35089299 35089604 -127510326 - AluY SINE Alu -6 305 1 2203 105 17 0 chrX 35089604 35089899 -127510031 - AluSx SINE Alu -12 300 1 1086 236 40 88 chrX 35089899 35090068 -127509862 - MLT1I LTR MaLR -257 152 10 1528 149 4 25 chrX 35090073 35090314 -127509616 + AluJo SINE Alu 1 236 -76 4164 152 29 3 chrX 35090316 35091009 -127508921 + MER50 LTR ERV1 1 711 -23 416 138 0 0 chrX 35091010 35091075 -127508855 + AluS SINE Alu 233 297 -13 1740 131 28 0 chrX 35092171 35092423 -127507507 + AluJo SINE Alu 40 298 -14 2669 80 19 21 chrX 35092858 35093233 -127506697 - THE1C LTR MaLR -1 374 1 363 121 0 0 chrX 35093271 35093329 -127506601 + (TCCCC)n Simple_repeat Simple_repeat 4 61 0 340 259 54 70 chrX 35093835 35094020 -127505910 - MER112 DNA MER1_type -40 220 39 1866 145 22 4 chrX 35094021 35094317 -127505613 + AluJo SINE Alu 1 301 0 2485 71 0 0 chrX 35094325 35094620 -127505310 + AluSq SINE Alu 7 301 -12 2213 96 6 35 chrX 35094664 35094976 -127504954 + AluSx SINE Alu 1 303 -9 1359 86 17 0 chrX 35094976 35095151 -127504779 + AluSg/x SINE Alu 132 309 -1 439 37 0 0 chrX 35095389 35095443 -127504487 + MADE1 DNA Mariner 1 54 -26 614 250 46 7 chrX 35095861 35096013 -127503917 - MIR SINE MIR -73 189 32 1010 232 60 0 chrX 35096117 35096350 -127503580 + L1M4 LINE L1 3775 4021 -2125 530 45 0 146 chrX 35096354 35096403 -127503527 - MADE1 DNA Mariner -4 76 44 2354 89 3 0 chrX 35096403 35096696 -127503234 + AluSp SINE Alu 1 294 -19 530 45 0 146 chrX 35096696 35096735 -127503195 - MADE1 DNA Mariner -36 44 1 1022 182 5 11 chrX 35096738 35096925 -127503005 + AluJb SINE Alu 126 311 -1 1467 204 6 57 chrX 35096926 35097020 -127502910 + L1M4 LINE L1 4011 4108 -2038 2298 117 0 3 chrX 35097020 35097319 -127502611 - AluSx SINE Alu -14 298 1 1467 204 6 57 chrX 35097319 35097577 -127502353 + L1M4 LINE L1 4108 4345 -1801 579 124 21 10 chrX 35097579 35097676 -127502254 + MER4A LTR ERV1 1 98 -566 1732 100 242 21 chrX 35097676 35098007 -127501923 + MER4A LTR ERV1 261 664 0 1535 216 31 68 chrX 35098007 35098143 -127501787 + L1M4 LINE L1 4344 4484 -1662 2358 111 0 0 chrX 35098143 35098450 -127501480 + AluSg SINE Alu 1 307 -3 1535 216 31 68 chrX 35098450 35098810 -127501120 + L1M4 LINE L1 4484 4819 -1327 1848 160 0 36 chrX 35098810 35099117 -127500813 + AluJo SINE Alu 3 298 -14 1535 216 31 68 chrX 35099117 35099174 -127500756 + L1M4 LINE L1 4819 4877 -1269 * 2698 193 63 20 chrX 35099172 35099332 -127500598 + L1MC/D LINE L1 4725 4877 -1482 2260 105 7 7 chrX 35099332 35099628 -127500302 + AluSx SINE Alu 1 296 -16 2698 193 63 20 chrX 35099628 35099771 -127500159 + L1MC/D LINE L1 4877 5012 -1347 2467 70 0 7 chrX 35099771 35100073 -127499857 + AluY SINE Alu 1 300 -11 2698 193 63 20 chrX 35100073 35100775 -127499155 + L1MC/D LINE L1 5012 5780 -579 2404 112 0 0 chrX 35100775 35101088 -127498842 + AluSq SINE Alu 1 313 0 325 196 119 53 chrX 35101139 35101292 -127498638 - L1MEc LINE L1 -2953 3262 2042 28 29 0 0 chrX 35101317 35101352 -127498578 + AT_rich Low_complexity Low_complexity 1 35 0 468 257 0 0 chrX 35101826 35101931 -127497999 - MLT1J LTR MaLR -1 510 406 1177 150 142 0 chrX 35101931 35102155 -127497775 + L1MA8 LINE L1 5839 6106 -185 2324 102 0 6 chrX 35102155 35102468 -127497462 + AluSp SINE Alu 2 312 -1 1177 150 142 0 chrX 35102468 35102503 -127497427 + L1MA8 LINE L1 6106 6135 -156 1840 130 78 0 chrX 35102503 35102810 -127497120 - AluSx SINE Alu 0 312 1 2148 117 3 26 chrX 35103307 35103614 -127496316 + AluJb SINE Alu 3 302 -10 396 329 70 4 chrX 35103683 35103911 -127496019 - L2 LINE L2 -219 3053 2811 834 328 0 0 chrX 35103915 35104153 -127495777 - MIR SINE MIR -10 252 15 207 133 0 44 chrX 35104202 35104247 -127495683 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 2434 90 3 3 chrX 35104253 35104563 -127495367 - AluSq SINE Alu -3 310 1 1820 159 20 74 chrX 35104569 35104645 -127495285 - L1MB7 LINE L1 -14 6170 6091 1805 147 0 67 chrX 35104645 35104959 -127494971 - AluJo SINE Alu -17 295 3 1820 159 20 74 chrX 35104959 35105240 -127494690 - L1MB7 LINE L1 -93 6091 5839 2561 77 0 0 chrX 35105240 35105551 -127494379 - AluSq SINE Alu -2 311 1 1820 159 20 74 chrX 35105551 35105638 -127494292 - L1MB7 LINE L1 -345 5839 5749 1927 197 2 13 chrX 35105660 35106056 -127493874 - L1PB4 LINE L1 -1 6155 5764 251 306 96 106 chrX 35106058 35106333 -127493597 - L2 LINE L2 -568 2746 2474 2012 102 3 51 chrX 35106333 35106656 -127493274 - AluSx SINE Alu 0 309 1 251 306 96 106 chrX 35106656 35106794 -127493136 - L2 LINE L2 -840 2474 2336 383 127 0 0 chrX 35307299 35307362 -127292568 + Alu SINE Alu 240 302 0 13561 38 6 4 chrX 35307516 35309207 -127290723 + L1P LINE L1 2017 3710 -2436 9228 52 10 8 chrX 35309207 35310276 -127289654 - MER11C LTR ERVK 0 1071 1 8085 67 5 3 chrX 35310276 35311274 -127288656 - HERVK11 LTR ERVK 0 7953 6954 * 11453 82 5 1 chrX 35311258 35312730 -127287200 - HERVK11 LTR ERVK -1188 6765 5287 7622 74 2 1 chrX 35312744 35313675 -127286255 - MER11C LTR ERVK -136 935 4 14377 43 0 3 chrX 35313675 35316151 -127283779 + L1PA5 LINE L1 3702 6149 -5 27 49 0 0 chrX 35316161 35316202 -127283728 + AT_rich Low_complexity Low_complexity 1 41 0 1677 108 0 0 chrX 35316701 35316924 -127283006 + AluSq SINE Alu 86 308 -5 21 0 0 0 chrX 35317003 35317024 -127282906 + AT_rich Low_complexity Low_complexity 1 21 0 4357 172 41 18 chrX 35317142 35317400 -127282530 + L1ME1 LINE L1 5265 5516 -650 2254 109 0 0 chrX 35317400 35317694 -127282236 + AluSg SINE Alu 1 294 -16 4357 172 41 18 chrX 35317694 35318312 -127281618 + L1ME1 LINE L1 5516 6161 -5 488 277 6 78 chrX 35318333 35318499 -127281431 + L2 LINE L2 2530 2683 -631 2508 81 0 3 chrX 35318530 35318840 -127281090 + AluSc SINE Alu 1 309 0 460 306 27 14 chrX 35319192 35319339 -127280591 + MIR SINE MIR 6 154 -108 282 233 192 8 chrX 35319383 35319503 -127280427 - MIR SINE MIR -3 259 118 1852 108 26 99 chrX 35319505 35319848 -127280082 + AluYb8 SINE Alu 1 318 0 2759 170 135 26 chrX 35319958 35320571 -127279359 + MER21B LTR ERV1 184 863 0 13992 172 35 27 chrX 35320640 35321782 -127278148 + MER21B-int LTR ERV1 1647 2779 -1412 2307 99 0 6 chrX 35321782 35322094 -127277836 + AluSx SINE Alu 1 310 -2 13992 172 35 27 chrX 35322094 35324873 -127275057 + MER21B-int LTR ERV1 2779 4149 -42 1688 99 0 0 chrX 35324904 35325125 -127274805 - AluSq SINE Alu -1 312 92 4335 157 87 13 chrX 35325169 35325928 -127274002 + MER21B LTR ERV1 5 819 -44 1728 235 78 25 chrX 35325969 35326560 -127273370 - L2 LINE L2 -1150 2164 1543 263 202 26 149 chrX 35326569 35326621 -127273309 + MIR SINE MIR 48 80 -182 2257 111 0 0 chrX 35326621 35326919 -127273011 - AluSg SINE Alu -12 298 1 263 202 26 149 chrX 35326919 35326980 -127272950 + MIR SINE MIR 80 147 -115 970 115 7 7 chrX 35327110 35327249 -127272681 + AluJb SINE Alu 1 139 -173 4347 43 10 0 chrX 35327351 35327866 -127272064 + LTR10C LTR ERV1 71 590 -1 1490 138 36 28 chrX 35327943 35328196 -127271734 - MER21B-int LTR ERV1 -3932 259 5 2259 114 133 4 chrX 35328196 35328675 -127271255 + LTR35 LTR ERV1 1 618 0 5059 147 41 13 chrX 35328711 35329541 -127270389 - MER21B LTR ERV1 -7 856 4 6233 136 35 42 chrX 35329608 35330010 -127269920 - MER21B-int LTR ERV1 -42 4149 3746 2146 220 28 28 chrX 35330010 35330515 -127269415 - LTR10B LTR ERV1 0 505 1 6233 136 35 42 chrX 35330515 35331217 -127268713 - MER21B-int LTR ERV1 -445 3746 3053 * 7909 153 76 45 chrX 35331208 35331429 -127268501 - LTR8A-int LTR ERV1 -985 3206 2993 186 191 0 43 chrX 35331429 35331476 -127268454 + MER5A DNA MER1_type 16 60 -129 7909 153 76 45 chrX 35331476 35331726 -127268204 - LTR8A-int LTR ERV1 -1198 2993 2752 2234 113 0 7 chrX 35331726 35332028 -127267902 - AluSq SINE Alu -13 300 1 7909 153 76 45 chrX 35332028 35333021 -127266909 - LTR8A-int LTR ERV1 -1439 2752 1648 1331 214 36 52 chrX 35333064 35333451 -127266479 - LTR8A-int LTR ERV1 -2401 1790 1410 3167 204 58 57 chrX 35333566 35334444 -127265486 - LTR8A-int LTR ERV1 -2252 4506 3628 2732 155 66 29 chrX 35334445 35334537 -127265393 - LTR8A-int LTR ERV1 -3656 535 448 2871 166 109 51 chrX 35334537 35335224 -127264706 - LTR8A LTR ERV1 0 727 1 2732 155 66 29 chrX 35335224 35335567 -127264363 - LTR8A-int LTR ERV1 -3743 448 76 2804 190 28 49 chrX 35335567 35336215 -127263715 - LTR27 LTR ERV1 -1 635 2 2732 155 66 29 chrX 35336215 35336294 -127263636 - LTR8A-int LTR ERV1 -4115 76 1 4872 158 68 15 chrX 35336307 35337124 -127262806 - MER21B LTR ERV1 -2 861 1 459 0 0 0 chrX 35337556 35337607 -127262323 + (CA)n Simple_repeat Simple_repeat 2 52 0 528 329 69 0 chrX 35337983 35338199 -127261731 - MIR SINE MIR -27 235 5 464 249 60 38 chrX 35338339 35338524 -127261406 - L1MC4a LINE L1 -539 7269 7081 231 268 0 0 chrX 35339331 35339402 -127260528 - HAL1 LINE L1 -2 2505 2435 2203 75 0 0 chrX 35339549 35339816 -127260114 - AluSc SINE Alu -8 301 35 219 88 0 0 chrX 35339968 35340002 -127259928 + (TC)n Simple_repeat Simple_repeat 1 34 0 1307 203 112 61 chrX 35340125 35340608 -127259322 - MLT1H LTR MaLR 0 549 1 1012 173 0 0 chrX 35340871 35341027 -127258903 + FRAM SINE Alu 1 155 -21 26 0 0 0 chrX 35341573 35341599 -127258331 + AT_rich Low_complexity Low_complexity 1 26 0 289 258 11 32 chrX 35341823 35341916 -127258014 + MIR3 SINE MIR 112 202 -6 24 67 0 0 chrX 35343412 35343457 -127256473 + AT_rich Low_complexity Low_complexity 1 45 0 1575 157 149 0 chrX 35344005 35344267 -127255663 - AluJo SINE Alu -1 301 1 831 173 0 8 chrX 35344270 35344403 -127255527 - AluJo/FLAM SINE Alu -169 133 2 23 0 0 0 chrX 35344787 35344810 -127255120 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrX 35345106 35345130 -127254800 + AT_rich Low_complexity Low_complexity 1 24 0 1041 156 12 6 chrX 35346615 35346788 -127253142 + AluSq SINE Alu 1 174 -139 294 95 0 0 chrX 35346897 35346939 -127252991 + (TA)n Simple_repeat Simple_repeat 2 43 0 201 154 0 0 chrX 35347462 35347501 -127252429 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1396 174 4 26 chrX 35347859 35348123 -127251807 - AluSq SINE Alu -53 260 3 2048 149 0 10 chrX 35348258 35348567 -127251363 + AluJb SINE Alu 1 306 -6 21 0 0 0 chrX 35348576 35348597 -127251333 + AT_rich Low_complexity Low_complexity 1 21 0 1868 139 7 37 chrX 35348899 35349194 -127250736 - AluJo SINE Alu -24 288 3 1259 160 10 5 chrX 35349855 35350049 -127249881 - AluJb SINE Alu -16 296 102 1835 91 4 42 chrX 35350050 35350314 -127249616 + AluSg SINE Alu 45 298 -12 240 125 0 0 chrX 35350322 35350354 -127249576 - Alu SINE Alu -17 158 127 2377 60 0 3 chrX 35350587 35350911 -127249019 + AluY SINE Alu 1 323 0 278 203 14 40 chrX 35351897 35351971 -127247959 - MIR3 SINE MIR -134 74 3 13545 36 1 0 chrX 35352632 35354943 -127244987 - L1PA4 LINE L1 -3 6152 3841 28 29 0 0 chrX 35355070 35355105 -127244825 + AT_rich Low_complexity Low_complexity 1 35 0 354 284 93 54 chrX 35356964 35357026 -127242904 - MIR SINE MIR -50 212 154 1813 144 10 23 chrX 35357026 35357325 -127242605 - AluJo SINE Alu -17 295 1 354 284 93 54 chrX 35357325 35357466 -127242464 - MIR SINE MIR -108 154 1 2352 65 0 14 chrX 35357543 35357835 -127242095 - AluY SINE Alu -7 304 17 804 154 31 23 chrX 35358024 35358154 -127241776 - FLAM_C SINE Alu -2 131 1 323 276 91 55 chrX 35358502 35358701 -127241229 - L1MC4 LINE L1 -1 8041 7836 408 139 15 0 chrX 35358719 35358793 -127241137 - L1ME2 LINE L1 0 6166 6089 250 257 0 14 chrX 35359317 35359391 -127240539 - L1ME1 LINE L1 -118 6048 5976 1299 194 178 54 chrX 35359913 35360424 -127239506 + MLT1F1 LTR MaLR 2 567 0 1273 132 14 0 chrX 35360546 35360759 -127239171 - L1MD2 LINE L1 -1 6358 6143 2075 125 0 42 chrX 35361697 35362010 -127237920 - AluSx SINE Alu -12 300 1 2146 97 44 7 chrX 35362230 35362528 -127237402 - AluSx SINE Alu -3 309 1 1760 182 3 7 chrX 35362530 35362826 -127237104 - AluJo SINE Alu -17 295 1 660 97 133 0 chrX 35363359 35363472 -127236458 - L1MA3 LINE L1 -5 6300 6173 328 39 0 20 chrX 35363996 35364047 -127235883 - AluSc SINE Alu -2 297 248 718 184 11 87 chrX 35364233 35364249 -127235681 - FRAM SINE Alu -136 40 24 2486 59 0 3 chrX 35364249 35364552 -127235378 - AluY SINE Alu -9 302 1 718 184 11 87 chrX 35364552 35364720 -127235210 - FRAM SINE Alu -152 24 1 2039 89 6 80 chrX 35364844 35365168 -127234762 - AluSx SINE Alu -12 300 1 24 53 0 0 chrX 35365812 35365850 -127234080 + AT_rich Low_complexity Low_complexity 1 38 0 458 221 176 18 chrX 35366024 35366296 -127233634 + L1ME4a LINE L1 5794 6108 -13 1616 139 12 0 chrX 35366476 35366727 -127233203 - L1PB3 LINE L1 -1 6153 5900 239 284 95 95 chrX 35366727 35366785 -127233145 + MIR SINE MIR 93 150 -112 2470 73 0 3 chrX 35366785 35367088 -127232842 + AluSp SINE Alu 1 302 -11 239 284 95 95 chrX 35367088 35367177 -127232753 + MIR SINE MIR 149 240 -22 2158 110 0 3 chrX 35367391 35367681 -127232249 - AluJb SINE Alu -23 289 1 744 174 0 43 chrX 35368217 35368355 -127231575 - FLAM_C SINE Alu -1 132 1 413 316 13 20 chrX 35368447 35368599 -127231331 - MIR3 SINE MIR -3 205 55 1203 219 0 5 chrX 35368652 35368876 -127231054 - MER58A DNA MER1_type -1 223 1 772 152 8 23 chrX 35370387 35370519 -127229411 + FLAM_C SINE Alu 1 130 -3 544 112 34 0 chrX 35370540 35370629 -127229301 - AluSp/q SINE Alu -9 304 213 896 192 10 30 chrX 35371043 35371246 -127228684 + MER3 DNA MER1_type 11 209 0 2258 88 20 3 chrX 35371368 35371662 -127228268 + AluSx SINE Alu 1 299 -13 22 0 0 0 chrX 35372200 35372222 -127227708 + AT_rich Low_complexity Low_complexity 1 22 0 2070 144 3 10 chrX 35372353 35372665 -127227265 - AluJb SINE Alu -2 310 1 1099 154 5 25 chrX 35373643 35373844 -127226086 + MER3 DNA MER1_type 2 198 -11 228 135 0 0 chrX 35374292 35374329 -127225601 + (T)n Simple_repeat Simple_repeat 1 37 0 2553 87 0 0 chrX 35374490 35374800 -127225130 - AluSq SINE Alu -3 310 1 1896 128 24 7 chrX 35375568 35375857 -127224073 - AluJo SINE Alu -18 294 1 615 83 0 10 chrX 35375984 35376080 -127223850 - AluJ/FRAM SINE Alu 0 312 218 * 792 215 0 13 chrX 35376076 35376234 -127223696 + AluJb SINE Alu 136 291 -21 269 94 4 0 chrX 35376252 35376297 -127223633 - Alu SINE Alu -14 288 252 992 196 6 0 chrX 35376407 35376586 -127223344 + AluJb SINE Alu 119 298 -14 191 304 0 0 chrX 35376950 35376996 -127222934 + L3 LINE CR1 1437 1482 -95 27 73 0 0 chrX 35377470 35377525 -127222405 + AT_rich Low_complexity Low_complexity 1 55 0 306 68 23 0 chrX 35378346 35378390 -127221540 + Alu SINE Alu 2 46 -255 2207 95 0 10 chrX 35379078 35379372 -127220558 + AluSx SINE Alu 1 291 -21 1581 164 0 12 chrX 35379407 35379651 -127220279 - AluJb SINE Alu -14 298 58 269 157 301 0 chrX 35379692 35379775 -127220155 + L1MC5 LINE L1 7805 7912 -49 25 51 0 0 chrX 35383622 35383661 -127216269 + AT_rich Low_complexity Low_complexity 1 39 0 689 130 30 46 chrX 35383749 35383880 -127216050 - FLAM_C SINE Alu 0 133 5 180 311 0 0 chrX 35384239 35384284 -127215646 - L2 LINE L2 -5 3267 3223 384 348 39 17 chrX 35384364 35384545 -127215385 - L2 LINE L2 -154 3118 2934 1822 130 60 3 chrX 35384899 35385184 -127214746 - AluJb SINE Alu -11 301 1 1424 284 135 30 chrX 35385735 35386396 -127213534 + L3 LINE CR1 843 1572 -5 1821 169 0 26 chrX 35386623 35386930 -127213000 + AluJb SINE Alu 1 299 -13 197 65 32 0 chrX 35387697 35387728 -127212202 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3162 258 95 17 chrX 35389178 35389622 -127210308 - L2 LINE L2 -509 2805 2397 885 105 0 70 chrX 35389622 35389765 -127210165 + AluJ SINE Alu 1 133 -169 3162 258 95 17 chrX 35389765 35390326 -127209604 - L2 LINE L2 -917 2397 1721 302 207 0 0 chrX 35390347 35390405 -127209525 - L1MC5 LINE L1 -68 7893 7836 302 240 133 36 chrX 35390523 35390719 -127209211 - L1MC5 LINE L1 -138 7823 7609 813 205 40 63 chrX 35390818 35391120 -127208810 - L1MC5 LINE L1 -396 7565 7271 765 188 24 72 chrX 35391508 35391716 -127208214 + AluJ SINE Alu 112 309 -3 1501 186 77 45 chrX 35391723 35392165 -127207765 - L1ME2 LINE L1 -10 6154 5699 927 209 13 94 chrX 35392169 35392524 -127207406 - L1MC5 LINE L1 -941 7076 6694 1879 121 96 0 chrX 35392524 35392796 -127207134 + AluSx SINE Alu 1 298 -14 2361 104 0 0 chrX 35392798 35393107 -127206823 + AluSc SINE Alu 1 309 0 927 209 13 94 chrX 35393107 35393203 -127206727 - L1MC5 LINE L1 -1212 6805 6703 2365 80 13 0 chrX 35393234 35393536 -127206394 + AluSp SINE Alu 2 307 -6 5111 134 48 60 chrX 35393610 35394299 -127205631 + Tigger2 DNA MER2_type 2 698 -2020 1982 103 0 4 chrX 35394299 35394560 -127205370 + AluSq SINE Alu 41 300 -13 5111 134 48 60 chrX 35394560 35394867 -127205063 + Tigger2 DNA MER2_type 698 987 -1731 1720 161 91 0 chrX 35394867 35395153 -127204777 + AluSx SINE Alu 1 312 0 5111 134 48 60 chrX 35395153 35395206 -127204724 + Tigger2 DNA MER2_type 987 1039 -1679 1464 131 12 37 chrX 35395207 35395451 -127204479 - AluJo SINE Alu -14 298 61 382 115 16 0 chrX 35395455 35395516 -127204414 + Tigger2 DNA MER2_type 1278 1339 -1379 1384 129 7 91 chrX 35395516 35395755 -127204175 - Tigger2 DNA MER2_type -1426 1292 1079 1904 153 10 10 chrX 35395755 35396063 -127203867 - 7SLRNA srpRNA srpRNA -12 308 1 1384 129 7 91 chrX 35396063 35396110 -127203820 - Tigger2 DNA MER2_type -1639 1079 1030 428 159 0 0 chrX 35396110 35396179 -127203751 + AluJ/FLAM SINE Alu 1 69 -243 847 113 152 0 chrX 35396199 35396350 -127203580 + Tigger2 DNA MER2_type 2535 2708 -10 2357 196 142 17 chrX 35396565 35397106 -127202824 + L1MC4 LINE L1 7044 7695 -347 2103 115 0 3 chrX 35397106 35397392 -127202538 - AluSx SINE Alu -25 287 3 2357 196 142 17 chrX 35397392 35397554 -127202376 + L1MC4 LINE L1 7695 7835 -207 398 205 33 25 chrX 35397575 35397697 -127202233 + L1MC4 LINE L1 7919 8041 -1 319 194 257 27 chrX 35397743 35397965 -127201965 - L1MC4a LINE L1 -1548 6260 5988 1912 152 7 7 chrX 35398077 35398379 -127201551 - AluJb SINE Alu -10 302 1 572 264 40 0 chrX 35398437 35398585 -127201345 - L2 LINE L2 -1881 1433 1280 560 199 126 136 chrX 35398585 35398684 -127201246 - MER5A DNA MER1_type 0 189 90 2444 82 0 3 chrX 35398684 35398987 -127200943 - AluSx SINE Alu -10 302 1 560 199 126 136 chrX 35398987 35399000 -127200930 - MER5A DNA MER1_type -99 90 78 891 165 0 0 chrX 35399000 35399133 -127200797 - FLAM_A SINE Alu 0 133 1 560 199 126 136 chrX 35399133 35399210 -127200720 - MER5A DNA MER1_type -111 78 1 * 844 220 11 26 chrX 35399210 35399390 -127200540 - L2 LINE L2 -2028 1286 1110 2294 176 34 22 chrX 35399823 35400273 -127199657 + L1MB2 LINE L1 5667 6125 -46 2294 103 3 22 chrX 35400273 35400584 -127199346 + AluSq SINE Alu 1 305 -8 2294 176 34 22 chrX 35400584 35400632 -127199298 + L1MB2 LINE L1 6125 6171 0 203 200 0 0 chrX 35401494 35401529 -127198401 + A-rich Low_complexity Low_complexity 1 35 0 1965 118 0 46 chrX 35402952 35403257 -127196673 - AluSx SINE Alu -21 291 1 2131 145 3 0 chrX 35403259 35403569 -127196361 - AluJb SINE Alu -1 311 1 427 256 33 133 chrX 35404096 35404174 -127195756 + MIR SINE MIR 15 99 -163 2216 87 56 0 chrX 35404174 35404462 -127195468 + AluSg SINE Alu 2 305 -5 427 256 33 133 chrX 35404462 35404518 -127195412 + MIR SINE MIR 99 159 -103 724 145 0 65 chrX 35404518 35404656 -127195274 - FLAM_C SINE Alu -4 129 1 427 256 33 133 chrX 35404656 35404790 -127195140 + MIR SINE MIR 159 257 -5 808 241 6 12 chrX 35404816 35404986 -127194944 + MER5B DNA MER1_type 10 178 0 727 303 242 19 chrX 35404988 35405575 -127194355 - L3 LINE CR1 -73 1504 787 209 412 0 12 chrX 35405585 35405670 -127194260 - L2 LINE L2 -48 3224 3141 2448 90 0 0 chrX 35405929 35406239 -127193691 + AluSq SINE Alu 1 310 -3 331 196 9 24 chrX 35406759 35406886 -127193044 - MIR SINE MIR -6 256 76 1061 172 0 21 chrX 35407908 35408094 -127191836 - AluJo SINE Alu -10 302 121 614 270 64 35 chrX 35410063 35410408 -127189522 + L1ME3A LINE L1 5594 5948 -222 2357 74 3 3 chrX 35410417 35410713 -127189217 - AluSq SINE Alu -15 298 3 283 345 73 0 chrX 35410993 35411103 -127188827 + L2 LINE L2 3149 3266 -6 2303 84 7 0 chrX 35411552 35411838 -127188092 - AluSx SINE Alu -24 288 1 2308 98 0 3 chrX 35413193 35413490 -127186440 - AluSx SINE Alu -12 300 5 243 132 0 0 chrX 35413492 35413530 -127186400 + Alu SINE Alu 228 265 -34 280 244 126 17 chrX 35414457 35414576 -127185354 - MIR SINE MIR -6 256 125 2467 76 3 0 chrX 35414778 35415082 -127184848 + AluSp SINE Alu 2 306 -7 2473 85 0 0 chrX 35415188 35415495 -127184435 + AluSc SINE Alu 2 308 -1 1178 231 49 73 chrX 35416108 35416881 -127183049 - L1ME3A LINE L1 -232 5938 5174 577 240 145 11 chrX 35417428 35417607 -127182323 + MIR SINE MIR 2 204 -58 323 290 19 56 chrX 35417778 35417885 -127182045 + L3 LINE CR1 967 1069 -508 1914 144 28 0 chrX 35417948 35418233 -127181697 + AluJo SINE Alu 1 293 -19 191 311 0 0 chrX 35419551 35419612 -127180318 + L3 LINE CR1 693 753 -824 792 134 0 17 chrX 35420231 35420350 -127179580 - FLAM_C SINE Alu -16 117 1 794 271 72 40 chrX 35420366 35420757 -127179173 - L2 LINE L2 -129 3184 2776 207 0 0 0 chrX 35420760 35420783 -127179147 + (T)n Simple_repeat Simple_repeat 1 23 0 221 225 0 0 chrX 35420790 35420830 -127179100 - MIR SINE MIR -4 258 219 * 284 268 216 0 chrX 35420796 35420893 -127179037 - L2 LINE L2 -16 3297 3180 895 129 81 21 chrX 35421958 35422144 -127177786 + MER20 DNA MER1_type 1 197 -22 405 226 0 104 chrX 35422832 35422938 -127176992 + L2 LINE L2 2498 2592 -722 1751 260 15 23 chrX 35422945 35423422 -127176508 + L2 LINE L2 2838 3310 -3 2092 97 0 17 chrX 35423536 35423872 -127176058 + AluJb SINE Alu 3 333 0 395 274 97 0 chrX 35424075 35424199 -127175731 + L2 LINE L2 2922 3057 -215 400 274 113 81 chrX 35424249 35424768 -127175162 + MLT1G1 LTR MaLR 16 587 -1 239 254 51 0 chrX 35424807 35424866 -127175064 + L2 LINE L2 3252 3313 0 2410 73 0 0 chrX 35425308 35425596 -127174334 - AluSx SINE Alu -24 288 1 189 0 0 0 chrX 35427973 35427994 -127171936 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2331 109 0 0 chrX 35428193 35428504 -127171426 - AluSq SINE Alu -2 311 1 290 297 157 42 chrX 35430010 35430246 -127169684 - L3 LINE CR1 -5 1572 1310 2041 109 4 11 chrX 35431156 35431430 -127168500 + AluSx SINE Alu 11 282 -30 2566 37 3 0 chrX 35431665 35431964 -127167966 - AluY SINE Alu -11 300 1 2241 114 7 0 chrX 35432328 35432636 -127167294 - AluSq SINE Alu -3 310 1 24 0 0 0 chrX 35433376 35433400 -127166530 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrX 35433967 35433990 -127165940 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 608 249 83 38 chrX 35434686 35434768 -127165162 - L1ME LINE L1 -439 5682 5605 2436 41 3 10 chrX 35434768 35435061 -127164869 - AluY SINE Alu -20 291 1 608 249 83 38 chrX 35435061 35435267 -127164663 - L1ME LINE L1 -516 5605 5381 2086 108 17 14 chrX 35436323 35436620 -127163310 + AluSx SINE Alu 1 298 -14 1111 109 0 0 chrX 35436696 35436843 -127163087 - AluSg/x SINE Alu -2 310 164 2138 122 0 3 chrX 35436943 35437238 -127162692 - AluSx SINE Alu -18 294 1 535 289 109 8 chrX 35437257 35437523 -127162407 - L1ME LINE L1 -1476 4670 4378 23 86 0 0 chrX 35437657 35437715 -127162215 + AT_rich Low_complexity Low_complexity 1 58 0 306 309 41 0 chrX 35438155 35438252 -127161678 + L1ME4a LINE L1 6017 6117 -4 370 154 0 0 chrX 35438328 35438399 -127161531 + MER34C LTR ERV1 1 101 -471 430 173 0 0 chrX 35438427 35438502 -127161428 - MER5C DNA MER1_type -200 124 50 1739 157 0 48 chrX 35438632 35438945 -127160985 - AluJo SINE Alu -14 298 1 1867 154 0 35 chrX 35439310 35439629 -127160301 + AluJo SINE Alu 1 308 -4 416 206 36 41 chrX 35439701 35439845 -127160085 + L1M4 LINE L1 2779 2923 -3223 1974 152 3 3 chrX 35439845 35440141 -127159789 - AluSx SINE Alu -15 297 2 416 206 36 41 chrX 35440141 35440190 -127159740 + L1M4 LINE L1 2923 2971 -3175 725 255 119 7 chrX 35440367 35440669 -127159261 + L1ME4a LINE L1 5531 5866 -255 227 189 164 8 chrX 35441033 35441155 -127158775 + L1M4 LINE L1 3085 3225 -2921 1844 189 0 0 chrX 35441155 35441457 -127158473 + AluJo SINE Alu 1 302 -10 2028 251 186 42 chrX 35441475 35441667 -127158263 + L1ME3A LINE L1 2835 2998 -3148 1767 152 14 24 chrX 35441667 35441964 -127157966 + AluJb SINE Alu 1 294 -18 2028 251 186 42 chrX 35441964 35442430 -127157500 + L1ME3A LINE L1 2998 3396 -2750 2421 84 0 0 chrX 35442430 35442728 -127157202 - AluSc SINE Alu -11 298 1 2028 251 186 42 chrX 35442728 35443890 -127156040 + L1ME3A LINE L1 3396 4918 -1228 796 236 101 19 chrX 35443875 35444142 -127155788 + L1ME3A LINE L1 5653 5941 -229 * 1071 198 8 44 chrX 35444166 35444414 -127155516 - MIR SINE MIR 0 262 24 1461 161 128 4 chrX 35445107 35445350 -127154580 - AluJo SINE Alu -38 274 2 2457 97 0 0 chrX 35445704 35446015 -127153915 + AluSq SINE Alu 1 311 -2 270 263 0 13 chrX 35447099 35447175 -127152755 - LTR67 LTR ERVL -479 78 4 276 250 57 34 chrX 35447209 35447297 -127152633 + MIR3 SINE MIR 88 177 -31 366 292 50 3 chrX 35447866 35447985 -127151945 - MIR SINE MIR -80 128 1 958 218 65 20 chrX 35449303 35449551 -127150379 - MIR SINE MIR -2 260 2 268 377 52 7 chrX 35449709 35449863 -127150067 + L2 LINE L2 2221 2381 -933 421 266 29 53 chrX 35449870 35450077 -127149853 - L1MEd LINE L1 -4893 1226 1025 1958 138 3 3 chrX 35450714 35451004 -127148926 + AluJb SINE Alu 2 291 -21 202 239 119 15 chrX 35451074 35451141 -127148789 + L2 LINE L2 2985 3058 -214 908 327 157 18 chrX 35451531 35452275 -127147655 + L2 LINE L2 1993 2840 -474 640 261 111 36 chrX 35452685 35453253 -127146677 + L1MC4a LINE L1 5521 6213 -1595 631 182 109 18 chrX 35453249 35453414 -127146516 + L1MD2 LINE L1 6164 6343 -16 * 204 59 0 59 chrX 35453420 35453454 -127146476 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 515 190 67 123 chrX 35453773 35453938 -127145992 - L1MC5 LINE L1 -65 7896 7750 2080 129 0 0 chrX 35453938 35454233 -127145697 + AluJb SINE Alu 1 295 -17 515 190 67 123 chrX 35454233 35454335 -127145595 - L1MC5 LINE L1 -211 7750 7644 2890 201 147 84 chrX 35454435 35454489 -127145441 - L1MC3 LINE L1 -11 7774 7725 1316 202 13 8 chrX 35454489 35454727 -127145203 - MER8 DNA MER2_type 0 239 1 2890 201 147 84 chrX 35454727 35455243 -127144687 - L1MC3 LINE L1 -60 7725 7243 355 169 0 31 chrX 35455243 35455308 -127144622 - MLT1F1 LTR MaLR -442 125 63 2890 201 147 84 chrX 35455308 35455894 -127144036 - L1MC3 LINE L1 -542 7243 6477 824 135 7 21 chrX 35456020 35456161 -127143769 + FLAM_C SINE Alu 2 140 -3 1537 170 4 0 chrX 35456517 35456764 -127143166 - AluJo SINE Alu 0 312 65 1690 170 18 4 chrX 35457000 35457301 -127142629 + AluJo SINE Alu 1 305 0 321 369 92 10 chrX 35457301 35457496 -127142434 + L1ME3A LINE L1 614 824 -5295 707 127 8 0 chrX 35457576 35457694 -127142236 + (TCTA)n Simple_repeat Simple_repeat 3 121 0 289 77 0 0 chrX 35457696 35457735 -127142195 - AluSp/q SINE Alu -14 289 251 2003 71 90 11 chrX 35457754 35458022 -127141908 - AluSq SINE Alu -24 289 1 575 279 121 34 chrX 35458065 35459307 -127140623 + L1ME3A LINE L1 919 2313 -3997 * 761 225 127 62 chrX 35459289 35459402 -127140528 + L1ME3A LINE L1 3058 3162 -2967 2410 92 16 0 chrX 35459402 35459708 -127140222 + AluSx SINE Alu 1 311 -1 761 225 127 62 chrX 35459708 35460051 -127139879 + L1ME3A LINE L1 3162 3559 -2570 2097 112 0 7 chrX 35460051 35460336 -127139594 + AluSx SINE Alu 1 283 -29 761 225 127 62 chrX 35460336 35460438 -127139492 + L1ME3A LINE L1 3559 3653 -2476 1723 163 44 10 chrX 35460443 35460737 -127139193 + AluJb SINE Alu 8 311 -1 3363 175 132 53 chrX 35460895 35461725 -127138205 - Tigger3b DNA MER2_type -1798 1230 284 7695 27 0 0 chrX 35461725 35463382 -127136548 + L1PA3 LINE L1 4499 6155 0 3363 175 132 53 chrX 35463382 35463691 -127136239 - Tigger3b DNA MER2_type -2744 284 1 693 247 139 58 chrX 35463694 35464301 -127135629 + L1ME3A LINE L1 3891 4646 -1483 449 207 209 6 chrX 35464350 35464537 -127135393 + L1ME3A LINE L1 5690 5913 -232 2296 94 10 0 chrX 35464543 35464840 -127135090 + AluSx SINE Alu 1 300 -12 240 272 52 58 chrX 35464928 35465101 -127134829 + L1ME3A LINE L1 5947 6118 -35 503 251 70 45 chrX 35465170 35465413 -127134517 + L1ME4a LINE L1 5611 5859 -262 2458 77 0 0 chrX 35465567 35465864 -127134066 - AluSq SINE Alu -16 297 1 2985 140 85 23 chrX 35466328 35466857 -127133073 + MER68 LTR ERV1 1 562 0 23 0 0 0 chrX 35467179 35467202 -127132728 + AT_rich Low_complexity Low_complexity 1 23 0 47 73 0 0 chrX 35467248 35467344 -127132586 + AT_rich Low_complexity Low_complexity 1 96 0 2216 119 0 0 chrX 35467989 35468282 -127131648 - AluSx SINE Alu -19 293 1 1711 180 21 7 chrX 35468287 35468570 -127131360 - AluJb SINE Alu -25 287 1 624 198 130 36 chrX 35469369 35469622 -127130308 + L1MC5 LINE L1 7637 7913 -48 427 270 51 22 chrX 35469947 35470084 -127129846 - MIR SINE MIR -121 141 1 1987 130 13 0 chrX 35470196 35470504 -127129426 + AluSx SINE Alu 1 312 0 2216 83 55 0 chrX 35470616 35470906 -127129024 + AluSx SINE Alu 1 306 -6 700 333 116 16 chrX 35470906 35471224 -127128706 - L3 LINE CR1 -7 1570 1221 469 270 0 0 chrX 35471312 35471427 -127128503 + Charlie2b DNA MER1_type 1 115 -2747 298 268 94 31 chrX 35471579 35471706 -127128224 + Charlie2b DNA MER1_type 558 692 -2090 864 170 0 32 chrX 35471741 35471929 -127128001 + Charlie2a DNA MER1_type 1474 1655 -1207 2338 77 7 3 chrX 35471929 35472228 -127127702 + AluSg SINE Alu 1 300 -10 350 182 9 82 chrX 35472267 35472333 -127127597 + Charlie2a DNA MER1_type 2756 2812 -50 2167 143 0 0 chrX 35472333 35472640 -127127290 - AluJb SINE Alu -5 307 1 350 182 9 82 chrX 35472640 35472683 -127127247 + Charlie2a DNA MER1_type 2812 2857 -5 537 283 242 21 chrX 35472684 35473069 -127126861 - L3 LINE CR1 -392 1185 716 1608 268 59 26 chrX 35473070 35473644 -127126286 + MLT1E LTR MaLR 1 593 0 683 308 87 52 chrX 35473645 35473725 -127126205 - L3 LINE CR1 -859 718 642 734 147 0 70 chrX 35473725 35473868 -127126062 - FLAM_C SINE Alu 0 133 1 683 308 87 52 chrX 35473868 35474154 -127125776 - L3 LINE CR1 -935 642 339 2333 98 0 7 chrX 35475207 35475513 -127124417 + AluSq SINE Alu 1 304 -9 435 268 174 16 chrX 35476213 35476403 -127123527 - MIR SINE MIR -41 221 2 1319 130 0 5 chrX 35477268 35477453 -127122477 - AluSx SINE Alu -17 295 112 885 121 0 0 chrX 35477584 35477700 -127122230 - AluSx SINE Alu -197 116 1 2234 85 31 37 chrX 35478493 35478774 -127121156 - L1PB1 LINE L1 -2 6149 5869 2384 95 0 7 chrX 35478774 35479079 -127120851 + AluSx SINE Alu 1 303 -9 2234 85 31 37 chrX 35479079 35479149 -127120781 - L1PB1 LINE L1 -282 5869 5800 21 0 0 0 chrX 35479173 35479194 -127120736 + AT_rich Low_complexity Low_complexity 1 21 0 2027 157 3 0 chrX 35479623 35479923 -127120007 - AluJo SINE Alu -11 301 1 1344 180 43 7 chrX 35479939 35480244 -127119686 - MER33 DNA MER1_type 0 324 9 229 297 127 25 chrX 35480358 35480476 -127119454 - L3b LINE CR1 -97 1486 1357 237 132 0 0 chrX 35480545 35480583 -127119347 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 334 283 85 9 chrX 35480583 35480689 -127119241 - MIR SINE MIR -58 150 37 294 221 74 0 chrX 35481981 35482076 -127117854 + L1ME1 LINE L1 6061 6162 -4 1844 147 0 11 chrX 35482719 35483036 -127116894 + AluJb SINE Alu 6 319 0 493 160 8 145 chrX 35483290 35483421 -127116509 - MER81 DNA DNA -1 113 1 381 291 143 37 chrX 35483475 35483664 -127116266 + MIR SINE MIR 2 210 -52 267 334 123 39 chrX 35484038 35484370 -127115560 + L2 LINE L2 2450 2809 -505 312 317 43 43 chrX 35484585 35484746 -127115184 + L2 LINE L2 2921 3081 -191 484 255 41 66 chrX 35484928 35485124 -127114806 - MIR3 SINE MIR -2 206 16 26 30 0 0 chrX 35485359 35485392 -127114538 + AT_rich Low_complexity Low_complexity 1 33 0 621 206 65 144 chrX 35485728 35485886 -127114044 - MIR SINE MIR -6 256 128 2218 117 7 0 chrX 35485886 35486186 -127113744 + AluSx SINE Alu 1 302 -10 621 206 65 144 chrX 35486186 35486304 -127113626 - MIR SINE MIR -134 128 2 204 147 88 29 chrX 35486464 35486532 -127113398 + (CAATT)n Simple_repeat Simple_repeat 4 75 0 2195 102 0 17 chrX 35486591 35486886 -127113044 + AluSx SINE Alu 1 290 -22 622 244 57 21 chrX 35486916 35487109 -127112821 + L1M4b LINE L1 11 210 -6649 368 315 78 103 chrX 35487331 35487740 -127112190 + L1M4b LINE L1 296 694 -6165 503 248 8 0 chrX 35487897 35488026 -127111904 - L1M3d LINE L1 -4720 1171 1042 2465 42 3 3 chrX 35488098 35488404 -127111526 - L1PA4 LINE L1 -4 6151 5846 554 196 0 0 chrX 35488404 35488506 -127111424 + L1M4b LINE L1 977 1078 -5781 680 168 198 38 chrX 35488557 35488795 -127111135 + L1M4b LINE L1 1237 1512 -5347 894 262 63 19 chrX 35488795 35489112 -127110818 + LTR16B LTR ERVL 127 457 -7 233 258 11 34 chrX 35489192 35489281 -127110649 + HAL1 LINE L1 266 352 -2155 314 253 89 89 chrX 35489357 35489503 -127110427 + HAL1 LINE L1 492 637 -1870 932 256 68 38 chrX 35489755 35490255 -127109675 + HAL1 LINE L1 947 1461 -1046 724 259 61 9 chrX 35490257 35490469 -127109461 - MIR SINE MIR -35 227 5 399 238 138 63 chrX 35490485 35490900 -127109030 + HAL1 LINE L1 1579 1961 -546 2124 116 7 13 chrX 35490900 35491203 -127108727 + AluSg SINE Alu 1 301 -9 399 238 138 63 chrX 35491203 35491588 -127108342 + HAL1 LINE L1 1961 2507 0 2119 124 0 0 chrX 35491658 35491949 -127107981 + AluSx SINE Alu 1 291 -21 187 347 63 32 chrX 35494085 35494180 -127105750 + L2 LINE L2 3155 3252 -20 502 291 96 17 chrX 35494183 35494589 -127105341 + L1MC4a LINE L1 5740 6177 -1631 207 0 0 0 chrX 35494812 35494835 -127105095 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1457 201 70 39 chrX 35495143 35495434 -127104496 - MSTD LTR MaLR 0 396 88 2198 106 3 0 chrX 35495434 35495747 -127104183 - AluSq SINE Alu 0 314 1 1457 201 70 39 chrX 35495747 35495838 -127104092 - MSTD LTR MaLR -308 88 1 546 279 77 40 chrX 35495838 35496075 -127103855 + MIR SINE MIR 8 256 -6 40642 53 2 4 chrX 35496178 35502343 -127097587 + L1PA5 LINE L1 1 6153 -1 398 331 23 12 chrX 35502439 35502696 -127097234 + L1MEc LINE L1 107 366 -6030 467 284 35 22 chrX 35502914 35503459 -127096471 + L1MEc LINE L1 828 1449 -4947 1754 163 32 0 chrX 35503460 35503742 -127096188 - AluJb SINE Alu -21 291 1 539 235 154 5 chrX 35503801 35504022 -127095908 + L1MEc LINE L1 2455 2708 -3507 * 1494 244 64 13 chrX 35504016 35504640 -127095290 + L1MEc LINE L1 3123 3778 -2437 1447 199 52 52 chrX 35504650 35505108 -127094822 + L1MEc LINE L1 3884 4341 -1874 375 125 0 0 chrX 35505108 35505164 -127094766 - Tigger4(Zombi) DNA MER2_type 0 2731 2676 432 194 86 0 chrX 35505166 35505259 -127094671 - Tigger4(Zombi) DNA MER2_type -2626 105 5 505 280 48 20 chrX 35505270 35505563 -127094367 + L1MEc LINE L1 4351 4651 -1564 1300 345 17 49 chrX 35505698 35505736 -127094194 + L1MEc LINE L1 4650 4688 -1527 441 0 0 0 chrX 35505736 35505785 -127094145 + (TG)n Simple_repeat Simple_repeat 2 50 0 1300 345 17 49 chrX 35505785 35506340 -127093590 + L1MEc LINE L1 4688 5224 -991 280 186 0 0 chrX 35506438 35506497 -127093433 + L1MEc LINE L1 5197 5255 -960 3666 225 95 62 chrX 35506519 35509058 -127090872 + L1ME2 LINE L1 3258 5882 -282 610 235 220 14 chrX 35509063 35509372 -127090558 + MLT1G3 LTR MaLR 153 590 0 2399 87 3 3 chrX 35509564 35509876 -127090054 + AluSx SINE Alu 1 312 0 284 339 24 24 chrX 35509885 35510009 -127089921 - MIR SINE MIR -133 129 6 405 348 108 10 chrX 35510760 35511065 -127088865 + L2 LINE L2 1822 2156 -1158 184 370 115 37 chrX 35511159 35511402 -127088528 + L2 LINE L2 2211 2472 -842 1245 262 135 52 chrX 35511556 35512231 -127087699 + LTR41 LTR ERVL 3 733 -40 1496 123 0 0 chrX 35512240 35512476 -127087454 + L1MA2 LINE L1 6065 6300 -4 256 128 82 0 chrX 35512499 35512548 -127087382 + LTR41 LTR ERVL 726 795 0 568 285 14 7 chrX 35513398 35513542 -127086388 + MLT1H1 LTR MaLR 1 145 -410 279 197 0 61 chrX 35513593 35513659 -127086271 - MLT1A1 LTR MaLR -157 208 147 1912 132 3 17 chrX 35513716 35514027 -127085903 - AluSx SINE Alu 0 307 1 1965 171 48 11 chrX 35514524 35514876 -127085054 - MLT1A1 LTR MaLR 0 365 1 460 304 113 10 chrX 35515238 35515432 -127084498 - MIR SINE MIR -15 247 34 2801 202 63 57 chrX 35516419 35516947 -127082983 - L1ME3A LINE L1 -41 6129 5606 540 0 0 0 chrX 35516947 35517007 -127082923 + (TA)n Simple_repeat Simple_repeat 2 61 0 2801 202 63 57 chrX 35517007 35517250 -127082680 - L1ME3A LINE L1 -564 5606 5350 2095 140 3 0 chrX 35517250 35517550 -127082380 - AluJb SINE Alu -11 301 1 2801 202 63 57 chrX 35517550 35517580 -127082350 - L1ME3A LINE L1 -820 5350 5322 2565 49 7 0 chrX 35517789 35518095 -127081835 + AluY SINE Alu 1 308 -3 304 224 75 93 chrX 35518306 35518413 -127081517 - L2 LINE L2 -1 3312 3208 369 301 121 34 chrX 35518537 35518743 -127081187 + MIR SINE MIR 37 260 -2 2261 88 0 7 chrX 35518927 35519239 -127080691 + AluSx SINE Alu 1 310 0 1162 162 81 65 chrX 35519635 35519729 -127080201 - Charlie2 DNA MER1_type -681 2181 2090 2831 165 51 7 chrX 35519729 35519809 -127080121 + L1MB7 LINE L1 5610 5685 -499 2874 219 35 9 chrX 35519809 35520445 -127079485 + MER82 DNA MER2_type 1 652 -1 2831 165 51 7 chrX 35520445 35520915 -127079015 + L1MB7 LINE L1 5685 6184 0 1162 162 81 65 chrX 35520915 35521007 -127078923 - Charlie2 DNA MER1_type -772 2090 2001 1977 124 0 11 chrX 35521007 35521289 -127078641 - AluJb SINE Alu -22 290 12 1162 162 81 65 chrX 35521289 35521422 -127078508 - Charlie2 DNA MER1_type -861 2001 1856 882 237 32 77 chrX 35521413 35521751 -127078179 - Charlie2 DNA MER1_type -2532 330 8 * 850 156 46 110 chrX 35521798 35522016 -127077914 + MER92B LTR ERV1 433 636 0 1028 94 0 0 chrX 35522475 35522602 -127077328 - AluSq/x SINE Alu -185 127 1 27 49 0 0 chrX 35523864 35523905 -127076025 + AT_rich Low_complexity Low_complexity 1 41 0 4337 194 28 46 chrX 35524409 35525288 -127074642 - L1MD2 LINE L1 -13 6346 5489 802 159 0 0 chrX 35525288 35525414 -127074516 - FLAM_C SINE Alu -7 126 1 4337 194 28 46 chrX 35525414 35525618 -127074312 - L1MD2 LINE L1 -870 5489 5283 3290 252 24 23 chrX 35525644 35525735 -127074195 - L1MD2 LINE L1 -1031 5115 5026 2228 81 3 17 chrX 35525735 35526031 -127073899 + AluSx SINE Alu 1 292 -20 3290 252 24 23 chrX 35526031 35526996 -127072934 - L1MD2 LINE L1 -1120 5026 4058 3752 243 22 17 chrX 35527022 35528133 -127071797 - L1ME3A LINE L1 -1175 4971 3814 11804 219 29 20 chrX 35528134 35528760 -127071170 - L1MB7 LINE L1 -358 6324 5705 1924 139 6 43 chrX 35528760 35529083 -127070847 - AluSx SINE Alu -1 311 1 11804 219 29 20 chrX 35529083 35529551 -127070379 - L1MB7 LINE L1 -977 5705 5243 1988 122 30 7 chrX 35529551 35529847 -127070083 + AluSq SINE Alu 1 303 -10 11804 219 29 20 chrX 35529847 35530791 -127069139 - L1MB7 LINE L1 -1439 5243 4309 2728 186 41 9 chrX 35530791 35531373 -127068557 - L1MB8 LINE L1 -11 6167 5567 11804 219 29 20 chrX 35531373 35533117 -127066813 - L1MB7 LINE L1 -2373 4309 2498 3313 91 0 0 chrX 35533150 35533592 -127066338 + L1MA3 LINE L1 5459 5900 -405 3272 106 29 47 chrX 35533692 35534250 -127065680 + L1MA2 LINE L1 5757 6304 0 2548 215 62 31 chrX 35534265 35535749 -127064181 - L1MB7 LINE L1 -4628 2018 383 2615 139 21 2 chrX 35535749 35536173 -127063757 + MSTB1 LTR MaLR 1 432 0 2548 215 62 31 chrX 35536173 35536569 -127063361 - L1MB7 LINE L1 -6263 383 1 1895 148 7 7 chrX 35537402 35537692 -127062238 + AluJb SINE Alu 1 290 -22 204 135 58 39 chrX 35537982 35538034 -127061896 + A-rich Low_complexity Low_complexity 2 54 0 23 86 0 0 chrX 35538334 35538392 -127061538 + AT_rich Low_complexity Low_complexity 1 58 0 28 0 0 0 chrX 35539180 35539208 -127060722 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 35539492 35539513 -127060417 + AT_rich Low_complexity Low_complexity 1 21 0 242 275 28 49 chrX 35541111 35541253 -127058677 + L2 LINE L2 2443 2581 -733 287 185 60 26 chrX 35541348 35541487 -127058443 + L1 LINE L1 5211 5358 -788 21 0 0 0 chrX 35541710 35541731 -127058199 + GC_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chrX 35541731 35541780 -127058150 + (CA)n Simple_repeat Simple_repeat 1 49 0 1345 261 79 30 chrX 35543705 35544146 -127055784 + HAL1 LINE L1 22 484 -2023 1436 64 0 0 chrX 35544147 35544320 -127055610 + AluY SINE Alu 127 299 -12 1854 234 119 34 chrX 35544329 35544661 -127055269 + HAL1 LINE L1 475 777 -1730 1189 163 4 44 chrX 35544661 35544888 -127055042 - MER20 DNA MER1_type -1 218 1 1854 234 119 34 chrX 35544888 35545760 -127054170 + HAL1 LINE L1 777 1877 -630 23 54 0 0 chrX 35546486 35546523 -127053407 + AT_rich Low_complexity Low_complexity 1 37 0 259 274 34 20 chrX 35546779 35546821 -127053109 + (TA)n Simple_repeat Simple_repeat 1 41 -107 3602 187 8 5 chrX 35546821 35547472 -127052458 - MER82 DNA MER2_type 0 653 1 259 274 34 20 chrX 35547472 35547575 -127052355 + (TA)n Simple_repeat Simple_repeat 41 148 0 221 222 0 0 chrX 35547584 35547629 -127052301 + L2 LINE L2 3263 3307 -6 21 0 0 0 chrX 35547908 35547929 -127052001 + AT_rich Low_complexity Low_complexity 1 21 0 285 128 0 0 chrX 35548738 35548785 -127051145 + (TG)n Simple_repeat Simple_repeat 1 47 0 682 109 41 24 chrX 35549224 35549527 -127050403 + (TA)n Simple_repeat Simple_repeat 1 308 0 201 293 51 83 chrX 35549604 35549761 -127050169 - L2 LINE L2 -221 3051 2900 2350 110 0 0 chrX 35549765 35550073 -127049857 + AluSx SINE Alu 1 308 -4 458 317 72 24 chrX 35550596 35550804 -127049126 - MIR SINE MIR -37 225 8 29 28 0 0 chrX 35551658 35551694 -127048236 + AT_rich Low_complexity Low_complexity 1 36 0 436 229 57 41 chrX 35552806 35552928 -127047002 + L2 LINE L2 2401 2524 -790 1918 221 32 35 chrX 35552928 35553420 -127046510 - L1MDb LINE L1 -5260 1283 793 1018 230 39 57 chrX 35553797 35554128 -127045802 - L1MDb LINE L1 -6199 341 17 189 0 0 0 chrX 35554466 35554487 -127045443 + (CTCA)n Simple_repeat Simple_repeat 4 24 0 269 345 76 34 chrX 35554708 35554827 -127045103 + L2 LINE L2 3149 3272 0 382 251 108 64 chrX 35556109 35556312 -127043618 + MIR SINE MIR 21 232 -30 2071 150 0 0 chrX 35557037 35557343 -127042587 + AluSx SINE Alu 1 306 -6 575 250 126 57 chrX 35557343 35558029 -127041901 + L1MDa LINE L1 1334 2108 -4516 1597 194 137 27 chrX 35558370 35558771 -127041159 - MLT1E3 LTR MaLR 0 624 180 701 274 114 20 chrX 35558740 35559134 -127040796 + MER113 DNA MER1_type? 90 520 -1 * 1216 179 13 18 chrX 35559511 35559735 -127040195 + MER58A DNA MER1_type 1 223 -1 2120 108 9 9 chrX 35560038 35560380 -127039550 - L1MC3 LINE L1 -1 7784 7443 207 0 0 0 chrX 35560791 35560814 -127039116 + (A)n Simple_repeat Simple_repeat 1 23 0 499 62 0 167 chrX 35561253 35561292 -127038638 + MADE1 DNA Mariner 1 16 -64 2210 102 3 7 chrX 35561292 35561597 -127038333 - AluSx SINE Alu -8 304 1 499 62 0 167 chrX 35561597 35561653 -127038277 + MADE1 DNA Mariner 16 80 0 2684 81 60 0 chrX 35561683 35562066 -127037864 - L1PA10 LINE L1 0 6168 5763 896 253 37 17 chrX 35563684 35563925 -127036005 - MIR SINE MIR -11 251 6 394 264 74 20 chrX 35564466 35564614 -127035316 + MIR3 SINE MIR 38 193 -15 647 135 9 0 chrX 35565360 35565471 -127034459 + L1MB4 LINE L1 6067 6178 -2 1766 122 52 18 chrX 35565685 35565971 -127033959 - MER65A LTR ERV1 -33 412 117 21 0 0 0 chrX 35565972 35565993 -127033937 + AT_rich Low_complexity Low_complexity 1 21 0 438 114 23 34 chrX 35566223 35566311 -127033619 + L1PB1 LINE L1 5958 6044 -107 1667 151 45 39 chrX 35566749 35567086 -127032844 - MER44D DNA MER2_type 0 609 1 724 193 67 13 chrX 35567733 35567883 -127032047 + L1ME3A LINE L1 6008 6165 -5 295 281 142 85 chrX 35568467 35568727 -127031203 + L2 LINE L2 2825 3099 -173 502 284 32 21 chrX 35568916 35569106 -127030824 + L2 LINE L2 3119 3310 -3 842 285 27 19 chrX 35569354 35569610 -127030320 + MIR SINE MIR 5 262 0 982 254 73 0 chrX 35571381 35571613 -127028317 - ERVL LTR ERVL -4141 1623 1375 747 264 100 55 chrX 35572013 35572502 -127027428 + MLT1J LTR MaLR 1 511 0 197 356 19 19 chrX 35572925 35573029 -127026901 + MIR SINE MIR 77 180 -82 468 0 0 0 chrX 35574799 35574851 -127025079 + (CA)n Simple_repeat Simple_repeat 1 52 0 2138 69 34 0 chrX 35575851 35576130 -127023800 - L1PB1 LINE L1 -69 6082 5791 231 114 0 0 chrX 35576130 35576165 -127023765 + (TA)n Simple_repeat Simple_repeat 2 36 0 2138 69 34 0 chrX 35576165 35576176 -127023754 - L1PB1 LINE L1 -360 5791 5782 205 176 0 0 chrX 35576176 35576210 -127023720 + (TATATG)n Simple_repeat Simple_repeat 1 34 0 369 281 0 0 chrX 35576210 35576299 -127023631 + L1MC4 LINE L1 6615 6703 -1339 327 319 0 0 chrX 35576230 35576321 -127023609 - L1MC4 LINE L1 -1338 6704 6614 * 1518 53 11 7 chrX 35576350 35576559 -127023371 - L1M1 LINE L1 -370 5781 5595 2141 76 16 6 chrX 35576697 35577012 -127022918 - L1P5 LINE L1 -535 5616 5299 339 85 0 0 chrX 35577714 35577761 -127022169 + (TG)n Simple_repeat Simple_repeat 2 48 0 2026 140 7 7 chrX 35578396 35578696 -127021234 - AluSx SINE Alu -12 300 1 23 0 0 0 chrX 35579216 35579239 -127020691 + AT_rich Low_complexity Low_complexity 1 23 0 1988 139 3 13 chrX 35579414 35579715 -127020215 + AluJb SINE Alu 1 298 -14 21 0 0 0 chrX 35579727 35579748 -127020182 + AT_rich Low_complexity Low_complexity 1 21 0 2076 126 7 7 chrX 35579840 35580141 -127019789 - AluSx SINE Alu -11 301 1 528 260 33 28 chrX 35580154 35580335 -127019595 + L1ME LINE L1 5551 5732 -389 255 305 73 0 chrX 35580362 35580444 -127019486 - L2 LINE L2 -48 3224 3137 1170 269 52 42 chrX 35580788 35581246 -127018684 + L1M4 LINE L1 405 867 -5675 2197 206 48 11 chrX 35581313 35581872 -127018058 + L1M4 LINE L1 880 1459 -5083 282 289 135 10 chrX 35581963 35582067 -127017863 - L2 LINE L2 0 3313 3197 207 0 0 0 chrX 35582104 35582127 -127017803 + (A)n Simple_repeat Simple_repeat 1 23 0 276 350 100 17 chrX 35582879 35582999 -127016931 - L2 LINE L2 -18 3254 3125 1005 261 122 88 chrX 35583036 35584075 -127015855 + HAL1 LINE L1 2 1075 -1432 2765 160 60 30 chrX 35584091 35584163 -127015767 - L1 LINE L1 -1753 5353 5285 1945 93 45 0 chrX 35584163 35584453 -127015477 - L1MA3 LINE L1 0 6305 6003 2765 160 60 30 chrX 35584453 35584981 -127014949 - L1 LINE L1 -1821 5285 4735 409 276 16 24 chrX 35585110 35585237 -127014693 - MIR3 SINE MIR -1 207 82 6484 233 65 37 chrX 35585344 35588248 -127011682 - L1 LINE L1 -2368 4738 1916 2279 116 0 0 chrX 35588248 35588549 -127011381 - AluSx SINE Alu -11 301 1 6484 233 65 37 chrX 35588549 35588704 -127011226 - L1 LINE L1 -5190 1916 1767 1766 135 45 58 chrX 35588704 35589016 -127010914 + AluJb SINE Alu 1 308 -4 6484 233 65 37 chrX 35589016 35589638 -127010292 - L1 LINE L1 -5339 1767 1242 494 215 39 23 chrX 35589662 35589708 -127010222 + HAL1 LINE L1 1601 1645 -862 2205 148 132 20 chrX 35589708 35590162 -127009768 - MLT1D LTR MaLR 0 505 1 494 215 39 23 chrX 35590162 35590245 -127009685 + HAL1 LINE L1 1645 1732 -775 226 247 43 54 chrX 35591010 35591103 -127008827 + MIR SINE MIR 129 220 -42 807 171 8 0 chrX 35591234 35591363 -127008567 + MER3 DNA MER1_type 1 130 -79 1866 172 11 16 chrX 35591363 35591740 -127008190 - L1MB7 LINE L1 0 6184 5810 1153 211 93 6 chrX 35591740 35592105 -127007825 + L1M4 LINE L1 4180 4576 -1570 2763 137 67 2 chrX 35592109 35592570 -127007360 - L1PA15 LINE L1 0 6165 5675 2754 157 25 0 chrX 35592579 35593049 -127006881 - L1MB7 LINE L1 -361 5817 5336 333 95 143 0 chrX 35593050 35593113 -127006817 + MER3 DNA MER1_type 126 197 -12 254 318 64 9 chrX 35593254 35593364 -127006566 - MIR SINE MIR -47 215 100 408 298 29 0 chrX 35593695 35593799 -127006131 - L2 LINE L2 -8 3305 3199 2260 121 0 29 chrX 35595251 35595598 -127004332 - MER1B DNA MER1_type 0 337 1 1759 94 23 43 chrX 35595618 35595874 -127004056 + AluSx SINE Alu 29 279 -33 198 0 0 0 chrX 35595874 35595896 -127004034 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 985 223 37 0 chrX 35596317 35596532 -127003398 - MER58A DNA MER1_type -1 223 1 960 178 32 11 chrX 35596548 35596733 -127003197 - MER5A DNA MER1_type 0 189 1 1994 120 27 7 chrX 35597106 35597407 -127002523 - AluSx SINE Alu -5 307 1 2247 113 0 0 chrX 35597691 35597982 -127001948 + AluSx SINE Alu 3 293 -19 268 241 0 81 chrX 35598041 35598128 -127001802 - MIR SINE MIR -65 197 118 26 0 0 0 chrX 35598867 35598893 -127001037 + AT_rich Low_complexity Low_complexity 1 26 0 1689 51 0 14 chrX 35599627 35599844 -127000086 - L1PA7 LINE L1 0 6154 5941 857 30 0 0 chrX 35599844 35599945 -126999985 + L1PA7 LINE L1 5849 5949 -223 371 145 81 0 chrX 35599963 35600025 -126999905 - AluJ/FRAM SINE Alu -13 289 223 2189 137 0 0 chrX 35600043 35600356 -126999574 - AluSq SINE Alu 0 313 1 719 164 0 0 chrX 35600403 35600519 -126999411 + FLAM_C SINE Alu 1 116 -27 230 73 24 0 chrX 35600539 35600580 -126999350 + (TA)n Simple_repeat Simple_repeat 1 42 0 240 236 73 0 chrX 35600679 35600734 -126999196 - MIR SINE MIR -60 148 90 1023 24 0 0 chrX 35600984 35601107 -126998823 + L1PA4 LINE L1 6030 6152 -3 613 241 28 0 chrX 35601151 35601292 -126998638 - MIR SINE MIR -47 215 71 2095 101 27 20 chrX 35603330 35603457 -126996473 + AluSx SINE Alu 1 126 -186 1839 80 42 49 chrX 35603457 35603743 -126996187 + AluY SINE Alu 1 284 -27 294 29 0 0 chrX 35603743 35603778 -126996152 + (CA)n Simple_repeat Simple_repeat 2 36 0 2095 101 27 20 chrX 35603778 35603946 -126995984 + AluSx SINE Alu 125 299 -13 324 191 43 61 chrX 35604970 35605063 -126994867 + MIR SINE MIR 81 176 -32 608 292 6 11 chrX 35606570 35606748 -126993182 - MER5B DNA MER1_type 0 178 2 222 375 125 0 chrX 35606843 35606979 -126992951 - L2 LINE L2 -4 3268 3116 411 225 112 0 chrX 35607008 35607097 -126992833 - U6 snRNA snRNA -2 105 7 231 250 0 0 chrX 35607798 35607846 -126992084 + (TGGG)n Simple_repeat Simple_repeat 2 49 0 622 133 0 0 chrX 35608799 35608897 -126991033 + MER3 DNA MER1_type 72 122 -87 1964 113 36 36 chrX 35608906 35609296 -126990634 + MER3 DNA MER1_type 2235 2624 0 207 0 0 0 chrX 35609622 35609645 -126990285 + (A)n Simple_repeat Simple_repeat 1 23 0 54 40 0 0 chrX 35611010 35611085 -126988845 + GC_rich Low_complexity Low_complexity 1 75 0 24 32 0 0 chrX 35612561 35612592 -126987338 + AT_rich Low_complexity Low_complexity 1 31 0 494 263 104 109 chrX 35613729 35614132 -126985798 - MLT1L LTR MaLR 0 615 111 2049 93 0 0 chrX 35614208 35614466 -126985464 - AluSq SINE Alu -55 258 1 218 403 67 49 chrX 35615057 35615462 -126984468 - L2 LINE L2 -49 3223 2812 783 228 100 52 chrX 35615844 35616147 -126983783 + LTR16A1 LTR ERVL 157 457 0 373 248 0 80 chrX 35616167 35616280 -126983650 + MER5A DNA MER1_type 31 134 -55 1033 71 0 0 chrX 35616281 35616408 -126983522 - AluSp/q SINE Alu -14 299 173 231 300 17 0 chrX 35616410 35616470 -126983460 + MER5A DNA MER1_type 129 189 0 2108 143 64 20 chrX 35616684 35617042 -126982888 + L1PB4 LINE L1 5781 6154 -2 754 287 107 87 chrX 35617135 35617685 -126982245 - MLT1K LTR MaLR -7 581 21 308 264 0 42 chrX 35617963 35618035 -126981895 + L2 LINE L2 3245 3313 0 261 286 48 0 chrX 35618095 35618179 -126981751 + L2 LINE L2 3226 3313 0 690 274 35 20 chrX 35619258 35619455 -126980475 - MIR SINE MIR -12 250 51 195 309 0 48 chrX 35619611 35619695 -126980235 - MIR SINE MIR 0 262 183 * 422 336 98 0 chrX 35619686 35619808 -126980122 - L2 LINE L2 -6 3266 3133 2295 146 55 49 chrX 35619812 35621013 -126978917 + L1MB2 LINE L1 4826 6120 -51 1895 183 0 3 chrX 35621013 35621325 -126978605 + AluJo SINE Alu 1 311 -1 2295 146 55 49 chrX 35621325 35621375 -126978555 + L1MB2 LINE L1 6120 6168 -3 24 32 0 0 chrX 35621376 35621407 -126978523 + AT_rich Low_complexity Low_complexity 1 31 0 431 337 45 6 chrX 35621410 35621588 -126978342 - MIR SINE MIR -66 196 12 2338 79 30 3 chrX 35622218 35622521 -126977409 + AluSq SINE Alu 3 313 0 2071 121 16 3 chrX 35623199 35623505 -126976425 + AluSx SINE Alu 1 310 -2 620 336 143 22 chrX 35624236 35624791 -126975139 - L2 LINE L2 -20 3252 2627 1305 264 109 17 chrX 35624834 35625311 -126974619 + LTR33 LTR ERVL 1 521 0 222 327 47 0 chrX 35625979 35626086 -126973844 - L3b LINE CR1 -225 1358 1247 1998 160 72 62 chrX 35626137 35626637 -126973293 - MLT1D LTR MaLR 0 505 1 216 260 20 0 chrX 35626773 35626823 -126973107 - L2 LINE L2 -36 3236 3186 764 214 48 7 chrX 35626987 35627132 -126972798 - FRAM SINE Alu -30 146 1 916 211 60 0 chrX 35627512 35627678 -126972252 - MER45A DNA AcHobo -2 176 1 2316 103 0 0 chrX 35627910 35628221 -126971709 + AluY SINE Alu 1 311 0 2502 60 3 0 chrX 35628675 35628974 -126970956 - AluY SINE Alu -11 300 1 749 264 143 18 chrX 35629108 35629437 -126970493 + LTR16A LTR ERVL 1 370 -80 2237 123 80 3 chrX 35630504 35630877 -126969053 + L1MC2 LINE L1 5943 6344 0 481 225 94 31 chrX 35631202 35631362 -126968568 + MLT1K LTR MaLR 400 569 -19 1121 78 0 46 chrX 35631362 35631515 -126968415 + L1PA10 LINE L1 6022 6167 -1 499 276 167 19 chrX 35631568 35631778 -126968152 - MIR SINE MIR -13 249 9 281 327 0 42 chrX 35631878 35631912 -126968018 + MIR SINE MIR 47 81 -127 367 231 13 0 chrX 35631912 35631990 -126967940 + MER116 DNA Mariner 1 79 -1 281 327 0 42 chrX 35631990 35632088 -126967842 + MIR SINE MIR 81 172 -36 1012 309 91 9 chrX 35632100 35632450 -126967480 - LTR16C LTR ERVL -24 467 89 1130 289 25 33 chrX 35632701 35633185 -126966745 - L1MC4a LINE L1 -1823 5985 5506 1232 299 48 8 chrX 35633541 35633915 -126966015 + LTR16C LTR ERVL 102 490 -1 276 30 0 0 chrX 35636142 35636175 -126963755 + (TG)n Simple_repeat Simple_repeat 2 34 0 947 261 33 45 chrX 35636225 35636467 -126963463 - L1MC4a LINE L1 -1832 5976 5738 2212 123 0 7 chrX 35636467 35636775 -126963155 - AluSx SINE Alu -6 306 1 947 261 33 45 chrX 35636775 35636865 -126963065 - L1MC4a LINE L1 -2070 5738 5648 272 139 0 0 chrX 35636984 35637027 -126962903 - MLT1E3 LTR MaLR 0 624 582 2190 101 0 36 chrX 35637095 35637403 -126962527 + AluSp SINE Alu 1 297 -16 412 382 44 0 chrX 35637653 35637881 -126962049 + MIR SINE MIR 19 256 -6 1977 194 138 79 chrX 35637991 35638609 -126961321 + MLT1E1 LTR MaLR 1 654 0 29 70 0 0 chrX 35639419 35639476 -126960454 + AT_rich Low_complexity Low_complexity 1 57 0 313 214 13 138 chrX 35641144 35641303 -126958627 + MIR SINE MIR 62 200 -62 548 317 103 24 chrX 35642022 35642363 -126957567 - L2 LINE L2 0 3313 2946 2595 87 22 33 chrX 35642485 35642853 -126957077 - THE1B LTR MaLR 0 364 1 397 319 64 38 chrX 35643173 35643439 -126956491 - L2 LINE L2 -685 2629 2357 1888 216 75 24 chrX 35643564 35644072 -126955858 + L2 LINE L2 2285 2818 -496 359 297 34 5 chrX 35644074 35644278 -126955652 - LTR16A LTR ERVL -260 204 1 742 170 254 0 chrX 35646052 35646217 -126953713 + MIR SINE MIR 2 208 -54 198 256 0 0 chrX 35646314 35646357 -126953573 + MIR SINE MIR 219 261 -1 1378 207 78 81 chrX 35646570 35647092 -126952838 + MER113 DNA MER1_type? 1 521 0 490 270 103 25 chrX 35647196 35647400 -126952530 + MIR SINE MIR 32 251 -11 234 311 115 22 chrX 35647409 35647595 -126952335 - L1M3 LINE L1 -243 5925 5724 202 188 0 94 chrX 35647597 35647661 -126952269 - MIR SINE MIR -67 141 84 240 298 35 0 chrX 35648081 35648138 -126951792 + L2 LINE L2 3213 3271 -1 250 301 94 62 chrX 35648889 35649145 -126950785 - MLT1H LTR MaLR -142 407 144 598 277 20 29 chrX 35649229 35649409 -126950521 + MIR SINE MIR 74 251 -11 2226 113 0 0 chrX 35649841 35650142 -126949788 - AluSx SINE Alu -11 301 1 229 381 51 8 chrX 35650155 35650273 -126949657 - MIR3 SINE MIR -49 159 37 2547 37 7 0 chrX 35650410 35650708 -126949222 - AluY SINE Alu -11 300 1 443 301 23 8 chrX 35650942 35651075 -126948855 + MIR3 SINE MIR 3 137 -71 268 267 80 0 chrX 35651105 35651180 -126948750 + L2 LINE L2 3193 3273 -40 306 234 16 0 chrX 35651498 35651562 -126948368 + L2 LINE L2 3249 3313 0 4730 164 55 19 chrX 35651981 35652362 -126947568 + L1MB4 LINE L1 4845 5211 -969 1531 230 18 44 chrX 35652362 35652678 -126947252 + MLT1A2 LTR MaLR 1 307 -67 1848 146 28 7 chrX 35652678 35652966 -126946964 - AluJb SINE Alu -18 294 1 1531 230 18 44 chrX 35652966 35653032 -126946898 + MLT1A2 LTR MaLR 307 373 -1 4730 164 55 19 chrX 35653032 35653936 -126945994 + L1MB4 LINE L1 5211 6179 -1 2012 206 73 55 chrX 35653976 35654535 -126945395 + MLT1E2 LTR MaLR 1 569 -57 2079 201 67 62 chrX 35654669 35655257 -126944673 + MLT1G LTR MaLR 1 556 -34 2259 188 140 19 chrX 35655257 35655296 -126944634 - MLT2B1 LTR ERVL 0 520 487 195 42 0 0 chrX 35655296 35655320 -126944610 + (TG)n Simple_repeat Simple_repeat 1 24 0 2259 188 140 19 chrX 35655320 35655744 -126944186 - MLT2B1 LTR ERVL -33 487 1 2079 201 67 62 chrX 35655744 35655780 -126944150 + MLT1G LTR MaLR 556 590 0 2382 83 0 7 chrX 35657806 35658106 -126941824 - AluSg SINE Alu -12 298 1 350 200 92 85 chrX 35658294 35658424 -126941506 - LTR50 LTR ERVL -305 490 360 1247 254 121 0 chrX 35658431 35658746 -126941184 + LTR16C LTR ERVL 85 437 -54 2919 179 30 9 chrX 35658789 35659348 -126940582 + L1PBa LINE L1 1 571 -6292 595 113 72 0 chrX 35659351 35659448 -126940482 + L1PBa LINE L1 603 706 -6157 372 156 0 16 chrX 35659448 35659509 -126940421 + LTR16C LTR ERVL 424 483 -8 292 109 65 0 chrX 35659509 35659555 -126940375 - LTR50 LTR ERVL -1 794 746 714 130 0 0 chrX 35659562 35659654 -126940276 - AluSx SINE Alu -27 283 192 1072 128 0 0 chrX 35659655 35659796 -126940134 - AluSx SINE Alu -171 141 1 241 89 67 0 chrX 35659796 35659841 -126940089 - LTR50 LTR ERVL -36 759 712 2241 161 77 23 chrX 35659865 35660306 -126939624 - MLT1C LTR MaLR 0 467 3 2373 213 104 26 chrX 35660312 35660936 -126938994 - LTR50 LTR ERVL -122 673 1 790 296 47 19 chrX 35661082 35661399 -126938531 - MARNA DNA Mariner -13 573 248 4653 88 0 3 chrX 35662422 35663059 -126936871 + L1PA13 LINE L1 5529 6163 0 609 319 115 35 chrX 35663326 35663806 -126936124 + HAL1b LINE L1 91 608 -740 301 265 39 34 chrX 35664180 35664422 -126935508 + L1MEc LINE L1 2141 2402 -3756 25 31 0 0 chrX 35664581 35664613 -126935317 + AT_rich Low_complexity Low_complexity 1 32 0 514 273 0 9 chrX 35664720 35664830 -126935100 - L2 LINE L2 -43 3229 3121 1560 346 44 20 chrX 35664880 35665623 -126934307 - L2 LINE L2 -403 2911 2151 1782 248 82 90 chrX 35666609 35667356 -126932574 - L1MC4 LINE L1 -32 8010 7259 1327 59 0 0 chrX 35667356 35667525 -126932405 + L1PA8 LINE L1 6001 6169 -3 1782 248 82 90 chrX 35667525 35667633 -126932297 - L1MC4 LINE L1 -783 7259 7152 2164 161 77 17 chrX 35667633 35668036 -126931894 - MSTA LTR MaLR -1 427 1 1782 248 82 90 chrX 35668036 35668227 -126931703 - L1MC4 LINE L1 -890 7152 6971 1561 250 65 26 chrX 35668666 35669158 -126930772 - MLT1J LTR MaLR 0 511 1 296 229 0 0 chrX 35670675 35670736 -126929194 - L2 LINE L2 -9 3263 3203 308 238 4 0 chrX 35670809 35670876 -126929054 - MER5A DNA MER1_type 0 189 110 243 378 30 7 chrX 35671035 35671170 -126928760 - L2 LINE L2 -455 2859 2722 * 1081 286 117 3 chrX 35671156 35671414 -126928516 - L2 LINE L2 -308 3005 2686 180 0 0 0 chrX 35671414 35671434 -126928496 + (ATATG)n Simple_repeat Simple_repeat 5 24 0 1081 286 117 3 chrX 35671434 35671562 -126928368 - L2 LINE L2 -627 2686 2574 3244 209 24 16 chrX 35671562 35672267 -126927663 - L1ME1 LINE L1 -67 6099 5389 448 189 44 0 chrX 35672267 35672357 -126927573 - L2 LINE L2 -787 2527 2434 27 0 0 0 chrX 35673451 35673478 -126926452 + AT_rich Low_complexity Low_complexity 1 27 0 555 50 0 12 chrX 35673479 35673559 -126926371 - L1MA1 LINE L1 -2 6300 6222 378 0 0 0 chrX 35673674 35673716 -126926214 + (CA)n Simple_repeat Simple_repeat 1 42 0 4543 123 25 0 chrX 35673747 35674478 -126925452 + L1MA8 LINE L1 3968 4716 -1430 2346 75 0 0 chrX 35674478 35674783 -126925147 + AluSg SINE Alu 1 305 0 5763 138 34 14 chrX 35674783 35675943 -126923987 + L1MA8 LINE L1 5106 6287 -4 327 257 127 87 chrX 35676029 35676282 -126923648 - L1MC/D LINE L1 -1983 6620 6358 * 2669 255 74 17 chrX 35676280 35677404 -126922526 - L1MCb LINE L1 -2782 4159 3010 5534 137 17 2 chrX 35677429 35678328 -126921602 - L1MA5 LINE L1 -2 6298 5387 6332 141 19 4 chrX 35678357 35679829 -126920101 + L1MA4 LINE L1 4866 6299 -1 318 233 128 11 chrX 35679841 35680021 -126919909 - L1MCb LINE L1 -4103 3019 2819 4854 234 127 17 chrX 35680100 35681645 -126918285 + L1MB8 LINE L1 121 1827 -5028 3620 227 25 7 chrX 35681650 35682662 -126917268 + L1MB8 LINE L1 2963 3992 -2965 1225 215 155 3 chrX 35682676 35683043 -126916887 + L1MB8 LINE L1 5661 6083 -874 605 176 0 0 chrX 35683051 35683142 -126916788 - Tigger7 DNA MER2_type -7 2480 2390 1221 178 99 8 chrX 35683147 35683389 -126916541 - Tigger7 DNA MER2_type -469 264 1 4099 188 59 11 chrX 35683389 35684258 -126915672 + L1MB8 LINE L1 6080 6989 0 1838 156 40 0 chrX 35684370 35684646 -126915284 - AluJo SINE Alu -23 289 3 606 293 153 20 chrX 35684766 35685466 -126914464 - L1MCb LINE L1 -4428 2513 1721 21 57 0 0 chrX 35685481 35685516 -126914414 + AT_rich Low_complexity Low_complexity 1 35 0 248 233 41 0 chrX 35685577 35685671 -126914259 - L1MCb LINE L1 -4955 1468 1367 356 316 39 64 chrX 35686231 35686513 -126913417 - L1MCb LINE L1 -6112 1010 736 296 180 33 131 chrX 35687505 35687566 -126912364 + MER103 DNA DNA 10 55 -111 2202 120 0 3 chrX 35687566 35687866 -126912064 - AluSp SINE Alu -13 300 2 296 180 33 131 chrX 35687866 35687926 -126912004 + MER103 DNA DNA 55 119 -47 597 261 116 5 chrX 35688054 35688261 -126911669 - LTR16C LTR ERVL 0 491 262 1586 166 8 8 chrX 35689399 35689658 -126910272 - AluJo SINE Alu -53 259 1 2893 128 47 2 chrX 35690000 35690494 -126909436 - L1MA9 LINE L1 0 6312 5797 32 0 0 0 chrX 35690689 35690721 -126909209 + AT_rich Low_complexity Low_complexity 1 32 0 237 65 0 0 chrX 35690757 35690788 -126909142 + (A)n Simple_repeat Simple_repeat 1 31 0 2092 117 0 17 chrX 35690788 35691088 -126908842 + AluSc SINE Alu 1 295 -14 180 200 0 50 chrX 35691142 35691182 -126908748 - L2 LINE L2 -254 3059 3022 4715 195 4 3 chrX 35691182 35692135 -126907795 + L1PA16 LINE L1 4232 5185 -961 42552 38 21 1 chrX 35692141 35698186 -126901744 + L1PA3 LINE L1 1 6170 0 821 190 6 0 chrX 35698186 35698360 -126901570 + L1 LINE L1 5176 5350 -796 6896 31 0 1 chrX 35698362 35699174 -126900756 - L1PA5 LINE L1 0 6154 5344 5478 108 11 11 chrX 35699174 35700000 -126899930 + L1PA16 LINE L1 5337 6162 -4 410 302 125 16 chrX 35700533 35700725 -126899205 + L2 LINE L2 2509 2721 -593 339 314 62 21 chrX 35701740 35701934 -126897996 - L2 LINE L2 0 3313 3112 680 280 135 5 chrX 35702243 35702450 -126897480 - MLT1I LTR MaLR -62 347 114 555 245 148 14 chrX 35703051 35703267 -126896663 + L1ME3A LINE L1 3588 3832 -2314 * 925 276 66 19 chrX 35703247 35703806 -126896124 + L1ME3A LINE L1 4805 5397 -773 1353 202 99 72 chrX 35703806 35704251 -126895679 - LTR16A1 LTR ERVL 0 457 1 925 276 66 19 chrX 35704251 35704300 -126895630 + L1ME3A LINE L1 5397 5442 -728 2171 96 0 17 chrX 35704315 35704617 -126895313 + AluSc SINE Alu 1 297 -12 1043 224 107 13 chrX 35704654 35704953 -126894977 - L1ME2 LINE L1 -10 6154 5828 618 290 42 28 chrX 35704952 35705409 -126894521 + L1ME3A LINE L1 5437 5896 -274 * 302 190 32 11 chrX 35705435 35705530 -126894400 - L1ME1 LINE L1 -207 5959 5860 24 0 0 0 chrX 35705794 35705818 -126894112 + AT_rich Low_complexity Low_complexity 1 24 0 2203 86 31 0 chrX 35706668 35706959 -126892971 - AluSg SINE Alu -10 300 1 289 271 75 53 chrX 35707908 35708041 -126891889 + L2 LINE L2 3136 3271 -1 459 248 85 0 chrX 35708201 35708330 -126891600 + MLT1J2 LTR MaLR 1 140 -310 1678 161 15 7 chrX 35708499 35708773 -126891157 - AluSx SINE Alu -36 276 1 2034 203 88 103 chrX 35708844 35709593 -126890337 - MER21B LTR ERV1 -124 739 2 874 134 0 0 chrX 35709620 35709747 -126890183 - FLAM_C SINE Alu -16 127 1 356 178 14 14 chrX 35709818 35709891 -126890039 - MER21B LTR ERV1 -124 739 667 2530 65 0 3 chrX 35710663 35710970 -126888960 - AluY SINE Alu -2 309 4 269 234 66 137 chrX 35711749 35711786 -126888144 - MLT1J LTR MaLR -245 205 167 2390 152 23 23 chrX 35711786 35712215 -126887715 - MSTB1 LTR MaLR -3 429 1 269 234 66 137 chrX 35712215 35712346 -126887584 - MLT1J LTR MaLR -283 167 51 188 288 68 0 chrX 35713806 35713865 -126886065 - L2 LINE L2 0 3272 3210 2244 109 0 3 chrX 35714019 35714321 -126885609 - AluSx SINE Alu -11 301 1 187 327 96 65 chrX 35714349 35714548 -126885382 + L2 LINE L2 2735 2939 -375 228 86 0 0 chrX 35714711 35714746 -126885184 + (ATGTG)n Simple_repeat Simple_repeat 1 35 0 243 270 153 9 chrX 35715906 35716017 -126883913 - MIR SINE MIR -10 252 126 239 182 0 0 chrX 35716158 35716202 -126883728 - LTR67 LTR ERVL -385 172 129 478 273 44 66 chrX 35716505 35716688 -126883242 - MIR SINE MIR -15 247 69 316 271 0 0 chrX 35716790 35716860 -126883070 + L2 LINE L2 3203 3272 0 745 243 27 57 chrX 35717063 35717326 -126882604 + LTR16A1 LTR ERVL 200 454 -3 183 80 0 0 chrX 35717392 35717417 -126882513 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2146 143 3 11 chrX 35717489 35717628 -126882302 - L1PB1 LINE L1 -1 6150 6012 3501 123 7 26 chrX 35717628 35718419 -126881511 - L1PA12 LINE L1 -149 6019 5271 1878 234 36 18 chrX 35718416 35719137 -126880793 - L1MDa LINE L1 -3451 3506 2775 * 315 331 48 36 chrX 35719149 35719453 -126880477 - L1MDa LINE L1 -4240 2719 2410 1487 258 58 23 chrX 35719610 35721727 -126878203 - L1MDa LINE L1 -4544 2415 2 1687 237 24 19 chrX 35723535 35724000 -126875930 - MLT1C LTR MaLR 0 467 1 2560 48 7 0 chrX 35724892 35725201 -126874729 - AluY SINE Alu 0 311 1 2408 69 0 7 chrX 35725405 35725711 -126874219 + AluY SINE Alu 1 304 -7 2223 120 0 19 chrX 35726200 35726516 -126873414 - AluSx SINE Alu -2 310 1 435 324 66 90 chrX 35726541 35727165 -126872765 - L1MC4a LINE L1 -1895 5913 5305 3236 107 0 0 chrX 35727517 35727984 -126871946 - L1PA14 LINE L1 0 6161 5695 752 156 9 120 chrX 35728370 35728595 -126871335 - MER58C DNA MER1_type -7 208 9 22 0 0 0 chrX 35728618 35728640 -126871290 + AT_rich Low_complexity Low_complexity 1 22 0 2059 125 46 55 chrX 35729280 35729647 -126870283 + THE1B LTR MaLR 1 364 0 1456 210 35 46 chrX 35729700 35730094 -126869836 - MLT1B LTR MaLR -1 395 1 997 133 6 24 chrX 35730184 35730350 -126869580 - AluSg/x SINE Alu -26 286 124 563 226 26 89 chrX 35731166 35731349 -126868581 - MIR SINE MIR -55 153 11 2493 199 35 0 chrX 35732433 35732941 -126866989 + HERVL74 LTR ERVL 1571 2096 -3589 4536 219 49 20 chrX 35733072 35734144 -126865786 + HERVL74 LTR ERVL 2251 3354 -202 813 162 71 30 chrX 35734150 35734347 -126865583 + LTR52 LTR ERVL 214 418 -3 709 268 79 48 chrX 35734347 35734687 -126865243 - MLT1J2 LTR MaLR -47 403 53 518 248 8 8 chrX 35736127 35736244 -126863686 + MIR3 SINE MIR 87 203 -5 353 283 21 35 chrX 35736363 35736508 -126863422 + L2 LINE L2 2322 2464 -850 221 263 38 38 chrX 35736641 35736721 -126863209 + MIR SINE MIR 12 91 -171 422 254 145 7 chrX 35736811 35736949 -126862981 + MIR SINE MIR 105 261 -1 1947 149 3 3 chrX 35737157 35737453 -126862477 - AluJb SINE Alu -16 296 1 1441 142 161 0 chrX 35737602 35737856 -126862074 - AluJo SINE Alu -17 295 1 549 218 32 0 chrX 35738002 35738145 -126861785 + MLT1G1 LTR MaLR 7 113 -442 569 206 14 21 chrX 35738197 35738338 -126861592 - MLT1H LTR MaLR -259 290 151 463 272 79 22 chrX 35738381 35738609 -126861321 + MLT1G LTR MaLR 112 352 -238 468 216 36 58 chrX 35738828 35738967 -126860963 + MLT1G LTR MaLR 411 546 -44 329 373 102 13 chrX 35739069 35739383 -126860547 + L2 LINE L2 2636 2977 -337 284 174 0 29 chrX 35739421 35739490 -126860440 + CT-rich Low_complexity Low_complexity 2 68 0 488 226 188 6 chrX 35739515 35739696 -126860234 - MLT1H1 LTR MaLR -7 548 335 402 167 2 0 chrX 35739702 35739775 -126860155 - MLT1H LTR MaLR -416 133 17 1867 157 32 35 chrX 35739911 35740312 -126859618 - L1MA4 LINE L1 -3 6297 5898 2294 84 7 3 chrX 35741123 35741421 -126858509 + AluY SINE Alu 1 299 -12 235 203 31 0 chrX 35741595 35741659 -126858271 - L1ME LINE L1 -239 5882 5817 431 301 48 14 chrX 35741665 35741881 -126858049 - L1ME LINE L1 -392 5729 5552 785 297 42 25 chrX 35742790 35743144 -126856786 - LTR16A LTR ERVL -66 384 25 411 347 21 34 chrX 35743255 35743494 -126856436 + MIR SINE MIR 21 256 -6 201 333 0 0 chrX 35743618 35743656 -126856274 + MIR3 SINE MIR 137 177 -31 2196 154 70 7 chrX 35743656 35744059 -126855871 - MSTA LTR MaLR 0 428 1 201 333 0 0 chrX 35744059 35744086 -126855844 + MIR3 SINE MIR 176 202 -6 1366 154 136 84 chrX 35744684 35744880 -126855050 - MLT1B LTR MaLR -2 388 204 2367 72 3 0 chrX 35744880 35745173 -126854757 - AluY SINE Alu -17 294 1 1366 154 136 84 chrX 35745173 35745345 -126854585 - MLT1B LTR MaLR -186 204 1 21 36 0 0 chrX 35745992 35746020 -126853910 + AT_rich Low_complexity Low_complexity 1 28 0 268 320 50 0 chrX 35746327 35746427 -126853503 + MER5C DNA MER1_type 2 106 -218 1121 197 32 0 chrX 35746487 35746736 -126853194 + MER33 DNA MER1_type 1 257 -67 5940 137 13 14 chrX 35746740 35746924 -126853006 - L1MC1 LINE L1 -2 6331 6148 2667 116 81 0 chrX 35746924 35747320 -126852610 - MSTA LTR MaLR 0 428 1 5940 137 13 14 chrX 35747320 35748163 -126851767 - L1MC1 LINE L1 -185 6148 5302 5868 115 7 62 chrX 35748592 35749624 -126850306 - L1PA16 LINE L1 -9 6157 5144 10251 224 13 42 chrX 35749631 35750020 -126849910 - L1PA16 LINE L1 -1311 4835 4436 309 0 0 0 chrX 35750020 35750064 -126849866 - AluY SINE Alu 0 301 258 10251 224 13 42 chrX 35750064 35752674 -126847256 - L1PA16 LINE L1 -1710 4436 1881 2810 227 26 5 chrX 35752674 35753455 -126846475 - L1MC1 LINE L1 -814 5332 4536 323 190 13 0 chrX 35753460 35753539 -126846391 + MER33 DNA MER1_type 242 321 -3 240 35 0 0 chrX 35753815 35753844 -126846086 + (TG)n Simple_repeat Simple_repeat 2 30 0 501 286 65 69 chrX 35754437 35754923 -126845007 + LTR67 LTR ERVL 6 554 -3 387 97 125 0 chrX 35755269 35755341 -126844589 + MER53 DNA DNA 1 81 -108 5432 129 14 4 chrX 35755549 35756867 -126843063 + L1PA13 LINE L1 4347 5679 -489 26 50 0 0 chrX 35756873 35756913 -126843017 + AT_rich Low_complexity Low_complexity 1 40 0 3567 90 2 0 chrX 35756936 35757427 -126842503 + L1PA13 LINE L1 5668 6159 -4 304 275 81 47 chrX 35757498 35757647 -126842283 - MIR SINE MIR -13 249 96 1791 190 14 19 chrX 35759974 35760338 -126839592 + MLT1A1 LTR MaLR 4 365 0 1314 185 50 7 chrX 35760340 35760642 -126839288 - LTR16C LTR ERVL -9 482 168 272 264 128 80 chrX 35761385 35761510 -126838420 - L2 LINE L2 0 3272 3142 1894 151 21 18 chrX 35761690 35762028 -126837902 - MER44D DNA MER2_type 0 609 1 481 298 120 31 chrX 35762076 35762301 -126837629 + MIR SINE MIR 10 254 -8 392 294 102 32 chrX 35762752 35762939 -126836991 - L2 LINE L2 -5 3308 3109 466 319 122 24 chrX 35763206 35763535 -126836395 - L2 LINE L2 -467 2847 2487 270 333 0 0 chrX 35763707 35763779 -126836151 + MIR3 SINE MIR 97 168 -40 275 289 78 56 chrX 35763894 35764041 -126835889 - MIR SINE MIR -52 210 59 793 172 0 23 chrX 35764046 35764174 -126835756 + FLAM_C SINE Alu 1 125 -8 1382 190 4 8 chrX 35764837 35765074 -126834856 - MSTB LTR MaLR 0 426 191 7528 177 27 29 chrX 35765074 35766245 -126833685 - MST-int LTR MaLR -283 1368 198 2182 144 0 0 chrX 35766245 35766557 -126833373 - AluSx SINE Alu 0 312 1 7528 177 27 29 chrX 35766557 35766755 -126833175 - MST-int LTR MaLR -1453 198 1 1269 225 0 4 chrX 35766947 35767191 -126832739 - MLT1H1 LTR MaLR -9 546 304 337 217 0 0 chrX 35767194 35767263 -126832667 - MLT1H1 LTR MaLR -486 69 1 2341 105 0 0 chrX 35767563 35767858 -126832072 + AluSg SINE Alu 1 295 -15 511 296 88 58 chrX 35767976 35768341 -126831589 + L2 LINE L2 2871 3246 -67 285 75 0 0 chrX 35768368 35768408 -126831522 + (TG)n Simple_repeat Simple_repeat 1 40 0 628 227 87 12 chrX 35768701 35768873 -126831057 + MLT1J LTR MaLR 10 194 -317 513 298 22 36 chrX 35768925 35769150 -126830780 + MLT1J LTR MaLR 288 509 -2 1034 182 116 12 chrX 35770056 35770298 -126829632 - LTR16C LTR ERVL -1 490 224 313 189 54 14 chrX 35770339 35770413 -126829517 + HAL1 LINE L1 2430 2506 -1 2289 92 10 0 chrX 35771027 35771331 -126828599 + AluY SINE Alu 1 307 -4 3119 189 73 22 chrX 35771449 35772131 -126827799 - L1ME3 LINE L1 -1 6161 5445 2298 110 0 3 chrX 35772570 35772880 -126827050 - AluSx SINE Alu -3 309 1 291 250 78 62 chrX 35772985 35773113 -126826817 - L2 LINE L2 0 3272 3143 214 356 138 31 chrX 35773345 35773730 -126826200 - L2 LINE L2 -337 2977 2552 1903 344 55 30 chrX 35773984 35775560 -126824370 + L2 LINE L2 1699 3313 0 1087 280 25 6 chrX 35775686 35776000 -126823930 + MER102b DNA MER1_type 1 320 -21 386 222 33 11 chrX 35776158 35776248 -126823682 - MIR3 SINE MIR -41 167 76 3808 125 30 82 chrX 35776477 35777205 -126822725 + LTR8 LTR ERV1 1 690 -1 312 27 0 0 chrX 35777205 35777242 -126822688 + (TAG)n Simple_repeat Simple_repeat 2 38 0 251 101 0 203 chrX 35777377 35777456 -126822474 - L1MB4 LINE L1 0 6174 6111 1750 171 107 0 chrX 35777457 35777784 -126822146 - L1MB5 LINE L1 -134 6040 5679 200 108 0 54 chrX 35778165 35778202 -126821728 - L2 LINE L2 -1 3312 3278 377 152 0 15 chrX 35778703 35778769 -126821161 + AluS SINE Alu 226 290 -10 3831 103 56 22 chrX 35778769 35779372 -126820558 - MER4-int LTR ERV1 -2135 4463 3840 4061 119 101 53 chrX 35779376 35780276 -126819654 - MER4-int LTR ERV1 -2919 3679 2737 1351 168 71 0 chrX 35780279 35780517 -126819413 + LTR8 LTR ERV1 4 258 -433 4618 72 47 11 chrX 35780517 35781223 -126818707 - MER4A-int LTR ERV1 -4104 2494 1764 1457 143 54 4 chrX 35781236 35781494 -126818436 - MER4A-int LTR ERV1 -5573 1185 915 4430 103 7 14 chrX 35781519 35782139 -126817791 - MER4A-int LTR ERV1 -5946 812 198 1261 242 94 11 chrX 35782153 35782504 -126817426 - MER4A-int LTR ERV1 -4107 2224 1845 2789 125 103 24 chrX 35782574 35783178 -126816752 - MER4A-int LTR ERV1 -5794 804 1 1867 110 6 88 chrX 35783181 35783500 -126816430 - MER4A LTR ERV1 0 664 372 638 96 43 11 chrX 35783528 35783622 -126816308 - MER4A LTR ERV1 -567 97 1 1413 213 89 3 chrX 35783888 35783966 -126815964 - MER2 DNA MER2_type 0 345 275 3911 167 22 48 chrX 35783966 35784708 -126815222 + MER72 LTR ERV1 1 722 0 1413 213 89 3 chrX 35784708 35784943 -126814987 - MER2 DNA MER2_type -70 275 5 296 270 61 26 chrX 35785478 35785593 -126814337 + MIR SINE MIR 14 132 -130 2624 153 35 31 chrX 35785595 35786077 -126813853 + MER110 LTR ERV1 1 484 -7 219 261 14 14 chrX 35786077 35786146 -126813784 + MIR3 SINE MIR 132 200 -8 723 111 40 8 chrX 35786313 35786439 -126813491 + L1MB3 LINE L1 6047 6176 -7 6041 174 21 28 chrX 35787675 35788722 -126811208 - MER45B DNA AcHobo 0 1040 1 480 293 48 7 chrX 35789386 35789533 -126810397 - MIR SINE MIR -87 175 23 636 221 120 49 chrX 35790594 35790961 -126808969 + LTR16C LTR ERVL 62 491 0 881 152 0 0 chrX 35791082 35791227 -126808703 - L1P LINE L1 -1080 5066 4922 7182 75 6 3 chrX 35791240 35792303 -126807627 + L1PA10 LINE L1 5104 6168 0 430 344 6 18 chrX 35795286 35795449 -126804481 - L2 LINE L2 -188 3084 2924 539 244 16 0 chrX 35795549 35795672 -126804258 - L2 LINE L2 0 3313 3189 325 313 0 55 chrX 35795677 35795805 -126804125 - L2 LINE L2 -508 2806 2686 314 260 89 19 chrX 35796586 35796689 -126803241 + MLT1I LTR MaLR 63 154 -255 477 198 11 0 chrX 35796798 35796889 -126803041 + MLT1I LTR MaLR 318 409 0 225 208 0 0 chrX 35797859 35797907 -126802023 - LTR66 LTR ERVL -168 442 395 495 0 0 0 chrX 35798469 35798524 -126801406 + (TC)n Simple_repeat Simple_repeat 1 55 0 342 0 0 0 chrX 35798523 35798561 -126801369 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 375 354 29 34 chrX 35798670 35798879 -126801051 - MLT1K LTR MaLR -207 381 174 930 99 19 62 chrX 35799510 35799672 -126800258 - THE1C LTR MaLR 0 375 221 332 367 79 0 chrX 35799706 35799935 -126799995 + L3 LINE CR1 338 584 -993 2802 46 15 3 chrX 35800143 35800472 -126799458 - L1PA7 LINE L1 0 6154 5822 1074 143 74 37 chrX 35800484 35800700 -126799230 - THE1C LTR MaLR -151 224 1 11015 116 8 22 chrX 35800700 35802299 -126797631 - THE1C-int LTR MaLR 0 1580 4 2136 126 40 37 chrX 35802302 35802676 -126797254 - THE1C LTR MaLR 0 375 1 1083 261 74 37 chrX 35803187 35803593 -126796337 - LTR16A LTR ERVL -13 437 17 225 274 14 0 chrX 35803656 35803729 -126796201 - L1ME4a LINE L1 -103 6018 5945 2091 188 9 47 chrX 35803830 35803929 -126796001 - MER96B DNA MER1_type? 0 417 316 2400 154 32 14 chrX 35803929 35804363 -126795567 + L1MA4 LINE L1 5859 6300 0 2091 188 9 47 chrX 35804363 35804689 -126795241 - MER96B DNA MER1_type? -101 316 8 390 259 38 30 chrX 35804763 35804894 -126795036 + L2 LINE L2 2501 2632 -682 473 175 24 63 chrX 35804933 35805059 -126794871 - L1M4 LINE L1 -1048 5098 4978 629 308 59 36 chrX 35805184 35805825 -126794105 - L1ME4a LINE L1 -368 5802 5119 2197 96 20 0 chrX 35805825 35806118 -126793812 - AluSq SINE Alu -14 299 1 629 308 59 36 chrX 35806118 35806322 -126793608 - L1ME4a LINE L1 -1051 5119 4921 612 261 130 10 chrX 35806625 35806832 -126793098 + MIR SINE MIR 31 262 0 226 188 12 47 chrX 35807315 35807400 -126792530 + (TATAA)n Simple_repeat Simple_repeat 1 82 0 631 245 155 7 chrX 35807597 35807752 -126792178 + MER5A DNA MER1_type 6 183 -6 1159 158 0 5 chrX 35808340 35808524 -126791406 + MER5A DNA MER1_type 7 189 0 548 280 39 39 chrX 35808558 35808740 -126791190 + MIR3 SINE MIR 8 189 -19 250 323 0 42 chrX 35809273 35809369 -126790561 + L2 LINE L2 2873 2964 -349 2222 202 112 31 chrX 35810547 35811121 -126788809 + MLT1E3 LTR MaLR 5 624 0 388 299 118 68 chrX 35811656 35811669 -126788261 - L2 LINE L2 -688 2626 2615 1220 211 42 5 chrX 35811669 35811882 -126788048 - MER58A DNA MER1_type 0 224 4 388 299 118 68 chrX 35811882 35812106 -126787824 - L2 LINE L2 -699 2615 2404 267 31 0 0 chrX 35812106 35812138 -126787792 + (TG)n Simple_repeat Simple_repeat 2 33 0 388 299 118 68 chrX 35812138 35812249 -126787681 - L2 LINE L2 -910 2404 2300 183 42 0 0 chrX 35812249 35812273 -126787657 + (GA)n Simple_repeat Simple_repeat 1 24 0 388 299 118 68 chrX 35812273 35812363 -126787567 - L2 LINE L2 -1014 2300 2164 2297 266 11 21 chrX 35812959 35813179 -126786751 - MLT1H1 LTR MaLR 0 555 334 2203 180 0 5 chrX 35813179 35813546 -126786384 - MLT1A1 LTR MaLR 0 365 1 2297 266 11 21 chrX 35813546 35813886 -126786044 - MLT1H1 LTR MaLR -221 334 1 683 327 45 36 chrX 35814017 35814353 -126785577 - LTR16C LTR ERVL -10 481 143 1423 159 30 4 chrX 35814366 35814599 -126785331 - L1PA16 LINE L1 -16 6150 5912 590 246 148 113 chrX 35815805 35816391 -126783539 - MLT1L LTR MaLR -6 609 3 418 347 24 18 chrX 35816399 35816566 -126783364 + MIR3 SINE MIR 37 204 -4 234 292 0 0 chrX 35817059 35817124 -126782806 + L2 LINE L2 3208 3272 0 1360 275 71 43 chrX 35817323 35818287 -126781643 - L2 LINE L2 -5 3308 2315 360 77 19 0 chrX 35819400 35819452 -126780478 + MADE1 DNA Mariner 28 80 0 348 208 144 32 chrX 35819452 35819567 -126780363 - MER112 DNA MER1_type -81 179 51 445 363 60 12 chrX 35819595 35819843 -126780087 + MIR SINE MIR 2 261 -1 4601 219 30 16 chrX 35820399 35822351 -126777579 - L1MB7 LINE L1 0 6184 4201 5384 224 42 25 chrX 35822362 35823623 -126776307 + L1M4 LINE L1 13 1295 -5247 1109 120 0 6 chrX 35823623 35823781 -126776149 + Tigger1 DNA MER2_type 1 157 -2261 * 1385 115 29 5 chrX 35823773 35823981 -126775949 + Tigger1 DNA MER2_type 2205 2417 -1 1621 149 122 0 chrX 35823984 35824320 -126775610 + L1M4 LINE L1 1291 1667 -4979 7518 234 38 10 chrX 35824325 35825753 -126774177 - L1MB7 LINE L1 -1933 4213 2713 1918 183 127 29 chrX 35825753 35826169 -126773761 - MSTB2 LTR MaLR 0 457 1 7518 234 38 10 chrX 35826169 35826751 -126773179 - L1MB7 LINE L1 -3433 2713 2148 2091 220 14 19 chrX 35826748 35826954 -126772976 - L1MD2 LINE L1 -3 6356 6151 * 222 62 0 0 chrX 35826954 35826986 -126772944 + (TG)n Simple_repeat Simple_repeat 1 32 0 2091 220 14 19 chrX 35826986 35827265 -126772665 - L1MD2 LINE L1 -208 6151 5873 642 176 10 0 chrX 35827270 35827372 -126772558 - U6 snRNA snRNA -4 103 1 3044 241 54 54 chrX 35827373 35827793 -126772137 - L1M4c LINE L1 -4127 2698 2279 2365 81 3 0 chrX 35827793 35828091 -126771839 - AluSx SINE Alu -13 299 1 3044 241 54 54 chrX 35828091 35828989 -126770941 - L1M4c LINE L1 -4546 2279 1249 862 121 60 0 chrX 35828989 35829138 -126770792 - L1MA4 LINE L1 -6 6294 6137 3044 241 54 54 chrX 35829138 35829455 -126770475 - L1M4c LINE L1 -5576 1249 933 641 299 105 25 chrX 35829591 35829905 -126770025 - L1M4c LINE L1 -5667 875 537 331 388 61 0 chrX 35829964 35830111 -126769819 - L1M4c LINE L1 -6021 525 370 517 255 27 5 chrX 35830159 35830343 -126769587 - L1M4c LINE L1 -6341 201 14 268 278 111 0 chrX 35832365 35832455 -126767475 + MIR SINE MIR 53 152 -110 204 286 16 0 chrX 35832725 35832788 -126767142 + (CA)n Simple_repeat Simple_repeat 1 64 0 521 189 67 67 chrX 35833268 35833432 -126766498 + MER112 DNA MER1_type 2 165 -95 1053 261 91 39 chrX 35833464 35833676 -126766254 + MLT1J2 LTR MaLR 21 221 -229 1836 193 25 11 chrX 35833676 35834033 -126765897 + MLT1A1 LTR MaLR 4 365 0 1053 261 91 39 chrX 35834033 35834226 -126765704 + MLT1J2 LTR MaLR 221 447 -3 508 273 31 0 chrX 35834378 35834506 -126765424 + MER94 DNA DNA 1 132 -2 260 233 116 23 chrX 35834543 35834629 -126765301 + MER5C DNA MER1_type 227 320 -4 329 106 0 0 chrX 35835633 35835680 -126764250 + MER5B DNA MER1_type 130 176 -2 501 219 168 13 chrX 35835703 35835858 -126764072 - MER5A DNA MER1_type -2 187 9 1625 177 17 128 chrX 35836099 35836506 -126763424 - MLT1A1 LTR MaLR -1 364 3 1770 214 73 12 chrX 35836750 35837175 -126762755 - LTR37B LTR ERV1 0 468 18 21 36 0 0 chrX 35837439 35837467 -126762463 + AT_rich Low_complexity Low_complexity 1 28 0 348 197 45 0 chrX 35838599 35838665 -126761265 - U3 snRNA snRNA -145 72 4 254 143 95 16 chrX 35838675 35838738 -126761192 + Tigger7 DNA MER2_type 2420 2487 0 455 305 30 36 chrX 35838958 35839125 -126760805 + MIR3 SINE MIR 5 170 -38 1729 215 84 42 chrX 35839152 35839677 -126760253 + MLT1G LTR MaLR 27 573 -17 197 237 0 0 chrX 35841453 35841491 -126758439 - L2 LINE L2 -21 3292 3255 233 331 38 38 chrX 35842326 35842486 -126757444 + MIR SINE MIR 49 208 -54 188 283 33 33 chrX 35842505 35842565 -126757365 - MIR SINE MIR -169 93 34 195 42 0 0 chrX 35842685 35842709 -126757221 + (CATA)n Simple_repeat Simple_repeat 1 24 0 2423 82 3 0 chrX 35842731 35843036 -126756894 + AluSp SINE Alu 1 306 -7 1487 199 76 8 chrX 35843177 35843559 -126756371 - L1ME1 LINE L1 -4 6162 5755 1026 277 87 64 chrX 35843596 35843986 -126755944 + MER115 DNA AcHobo 2 400 -293 665 308 11 5 chrX 35844151 35844336 -126755594 - MIR3 SINE MIR -3 205 20 993 204 38 12 chrX 35844350 35844590 -126755340 - Charlie2 DNA MER1_type 0 2862 2617 19611 168 5 12 chrX 35844597 35849184 -126750746 - L1PA13 LINE L1 -19 6795 2239 7266 121 27 15 chrX 35849184 35850242 -126749688 - MER11C LTR ERVK 0 1071 1 8147 54 8 14 chrX 35850242 35851245 -126748685 - HERVK11 LTR ERVK 0 7953 6957 * 9545 49 8 1 chrX 35851230 35852412 -126747518 - HERVK11 LTR ERVK -1186 6767 5525 1915 47 0 4 chrX 35852410 35852644 -126747286 - HERVK11 LTR ERVK -3352 4601 4369 * 14166 150 20 6 chrX 35852644 35854827 -126745103 - L1PA13 LINE L1 -4573 2214 1 514 241 69 6 chrX 35854834 35855008 -126744922 - Charlie2 DNA MER1_type -230 2632 2448 211 219 0 0 chrX 35855035 35855076 -126744854 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 1191 242 76 70 chrX 35855111 35855793 -126744137 - L2 LINE L2 0 3313 2628 2250 165 23 29 chrX 35855797 35856192 -126743738 + MLT2B1 LTR ERVL 1 375 -39 309 109 0 0 chrX 35856192 35856238 -126743692 + (TG)n Simple_repeat Simple_repeat 2 47 0 2250 165 23 29 chrX 35856238 35856276 -126743654 + MLT2B1 LTR ERVL 375 412 -2 1569 251 58 36 chrX 35856312 35856779 -126743151 + LTR33 LTR ERVL 39 515 -6 1441 231 164 24 chrX 35856784 35857204 -126742726 - MLT1G1 LTR MaLR -8 587 109 618 189 98 33 chrX 35857251 35857338 -126742592 - L2 LINE L2 -685 2629 2549 2842 131 14 32 chrX 35857338 35857780 -126742150 - Tigger2a DNA MER2_type 0 434 1 618 189 98 33 chrX 35857780 35857845 -126742085 - L2 LINE L2 -765 2549 2467 1150 330 55 9 chrX 35857845 35858282 -126741648 - LTR16B LTR ERVL 0 464 8 927 275 5 0 chrX 35858289 35858500 -126741430 - L2 LINE L2 -843 2471 2260 1322 174 112 114 chrX 35858527 35858938 -126740992 - Charlie2 DNA MER1_type -462 2400 1989 1806 171 3 14 chrX 35858938 35859230 -126740700 - AluJb SINE Alu -23 289 1 1322 174 112 114 chrX 35859230 35859308 -126740622 - Charlie2 DNA MER1_type -873 1989 1912 675 260 108 28 chrX 35859352 35859602 -126740328 - Charlie2 DNA MER1_type -2554 308 39 263 287 96 17 chrX 35860195 35860329 -126739601 + MIR SINE MIR 20 165 -61 185 384 16 37 chrX 35860598 35860788 -126739142 - L2 LINE L2 -182 3090 2905 7559 50 2 0 chrX 35860824 35862120 -126737810 - L1PA7 LINE L1 0 6154 4862 925 65 0 0 chrX 35862120 35862227 -126737703 - U6 snRNA snRNA 0 107 1 317 311 33 50 chrX 35862239 35862419 -126737511 - L1ME LINE L1 -392 5729 5553 414 307 50 0 chrX 35862584 35862724 -126737206 + MIR SINE MIR 2 148 -114 453 260 58 46 chrX 35863529 35863561 -126736369 - MIR SINE MIR -27 235 205 2625 139 27 27 chrX 35863561 35863970 -126735960 + LTR57 LTR ERVL 3 411 0 453 260 58 46 chrX 35863970 35864110 -126735820 - MIR SINE MIR -57 205 61 216 154 0 51 chrX 35865163 35865202 -126734728 + L2 LINE L2 3243 3279 -34 360 237 180 71 chrX 35865238 35865521 -126734409 - MLT1J LTR MaLR -143 368 55 2503 167 58 16 chrX 35865534 35865982 -126733948 - MLT1C LTR MaLR 0 467 1 1377 253 90 43 chrX 35866004 35866513 -126733417 + MLT1H1 LTR MaLR 23 555 0 636 239 15 8 chrX 35867474 35867604 -126732326 + MIR SINE MIR 14 144 -118 1060 228 57 111 chrX 35867604 35867939 -126731991 + MLT1G LTR MaLR 1 312 -283 3462 196 8 39 chrX 35867951 35868618 -126731312 - MER82 DNA MER2_type -6 647 2 280 238 40 50 chrX 35868686 35868787 -126731143 + MLT1G LTR MaLR 367 466 -76 187 216 59 0 chrX 35868914 35868965 -126730965 + MIR SINE MIR 139 192 -70 388 327 103 6 chrX 35869059 35869224 -126730706 - MIR3 SINE MIR -3 205 25 2957 119 16 23 chrX 35870886 35871321 -126728609 - MSTB1 LTR MaLR 0 432 1 432 0 0 0 chrX 35871627 35871675 -126728255 + (TG)n Simple_repeat Simple_repeat 1 48 0 499 186 20 10 chrX 35871755 35871857 -126728073 + MER5A DNA MER1_type 86 188 -1 2085 159 25 22 chrX 35872433 35872797 -126727133 + MLT1A1 LTR MaLR 1 365 0 1716 250 129 28 chrX 35873916 35874497 -126725433 - MLT2F LTR ERVL 0 663 24 459 287 64 19 chrX 35875313 35875470 -126724460 - MIR3 SINE MIR -2 206 43 191 181 28 139 chrX 35877264 35877336 -126722594 - L2 LINE L2 -27 3245 3182 1188 144 16 5 chrX 35877544 35877731 -126722199 + MER5A DNA MER1_type 1 189 0 210 258 65 0 chrX 35877816 35877878 -126722052 + L2 LINE L2 2912 2977 -336 2227 54 0 25 chrX 35877923 35878200 -126721730 + AluY SINE Alu 41 310 -1 229 293 0 43 chrX 35878204 35878320 -126721610 + L2 LINE L2 3127 3237 -76 2498 243 45 33 chrX 35878677 35879234 -126720696 - L2 LINE L2 0 3313 2742 2325 96 3 0 chrX 35879234 35879527 -126720403 - AluSp SINE Alu -11 302 9 2498 243 45 33 chrX 35879527 35879991 -126719939 - L2 LINE L2 -571 2742 2285 182 171 24 0 chrX 35880671 35880712 -126719218 + (TA)n Simple_repeat Simple_repeat 2 43 0 2388 157 80 9 chrX 35880744 35881170 -126718760 + MLT1D LTR MaLR 48 503 -2 637 301 8 37 chrX 35881172 35881418 -126718512 - MIR SINE MIR -21 241 3 202 195 24 0 chrX 35881552 35881593 -126718337 + L2 LINE L2 3265 3306 -7 2169 119 34 91 chrX 35882459 35882845 -126717085 - THE1B LTR MaLR 0 364 1 897 298 70 32 chrX 35883206 35883679 -126716251 - LTR16C LTR ERVL 0 491 1 187 179 51 0 chrX 35884749 35884788 -126715142 - L2 LINE L2 0 3313 3273 219 286 155 0 chrX 35885406 35885490 -126714440 - MIR SINE MIR -164 98 2 5502 138 31 10 chrX 35885735 35886520 -126713410 - L1MA7 LINE L1 0 6291 5483 2335 94 0 0 chrX 35886520 35886817 -126713113 - AluSg SINE Alu -13 297 1 5502 138 31 10 chrX 35886817 35886945 -126712985 - L1MA7 LINE L1 -808 5483 5359 1608 134 123 0 chrX 35888797 35889058 -126710872 - AluSx SINE Alu -19 293 1 249 286 54 9 chrX 35889128 35889240 -126710690 - L1MC4 LINE L1 -2 8040 7924 960 138 26 20 chrX 35889829 35889981 -126709949 + L1PB4 LINE L1 5998 6150 -6 43588 34 23 1 chrX 35890005 35896025 -126703905 - L1PA3 LINE L1 0 6155 2 294 164 55 0 chrX 35897203 35897258 -126702672 + L2 LINE L2 3210 3267 -5 1083 252 99 85 chrX 35898021 35898206 -126701724 + LTR16C LTR ERVL 37 218 -273 2580 55 3 3 chrX 35898206 35898517 -126701413 - AluY SINE Alu 0 311 1 1083 252 99 85 chrX 35898517 35898755 -126701175 + LTR16C LTR ERVL 218 466 -25 297 0 0 0 chrX 35898797 35898830 -126701100 + (CA)n Simple_repeat Simple_repeat 2 34 0 594 264 8 0 chrX 35898830 35898955 -126700975 + Tigger3(Golem) DNA MER2_type 3 128 -2901 * 4289 124 57 19 chrX 35898926 35899650 -126700280 + Tigger3(Golem) DNA MER2_type 2277 3027 -2 234 247 12 35 chrX 35899811 35899896 -126700034 - L1MC/D LINE L1 -2004 5804 5722 403 255 19 19 chrX 35900415 35900521 -126699409 - MIR3 SINE MIR -25 183 78 1274 188 40 29 chrX 35900889 35901161 -126698769 - ORSL DNA AcHobo 0 275 1 2113 153 7 77 chrX 35901195 35901612 -126698318 - MLT1B LTR MaLR -2 388 1 263 344 58 13 chrX 35903065 35903219 -126696711 - MER5A DNA MER1_type -28 161 1 540 72 0 0 chrX 35903898 35903967 -126695963 - Alu SINE Alu -7 305 237 221 213 0 43 chrX 35904215 35904262 -126695668 - L2 LINE L2 -18 3254 3210 348 292 10 109 chrX 35904414 35904616 -126695314 - L3b LINE CR1 -256 1327 1146 541 267 55 9 chrX 35904724 35904924 -126695006 + MIR SINE MIR 4 210 -52 305 312 54 6 chrX 35905281 35905431 -126694499 + MER5A DNA MER1_type 2 162 -16 560 248 106 0 chrX 35905452 35905613 -126694317 - MER5A DNA MER1_type -11 178 1 2171 124 6 32 chrX 35906154 35906500 -126693430 - L1MC1 LINE L1 0 6333 5997 1647 243 86 41 chrX 35907779 35908265 -126691665 - MLT1J LTR MaLR -3 508 1 1402 186 104 33 chrX 35908474 35908867 -126691063 + LTR37A LTR ERV1 6 426 0 520 274 102 28 chrX 35909015 35909230 -126690700 - MIR SINE MIR 0 262 32 317 203 72 0 chrX 35909495 35909564 -126690366 + MIR SINE MIR 17 90 -118 227 147 40 53 chrX 35909590 35909647 -126690283 - MIR SINE MIR -63 145 96 229 269 200 39 chrX 35909750 35909880 -126690050 + MIR3 SINE MIR 37 187 -21 16319 191 16 27 chrX 35909896 35910321 -126689609 - L1MA4A LINE L1 -27 6978 6550 288 0 0 0 chrX 35910321 35910353 -126689577 + (TA)n Simple_repeat Simple_repeat 2 33 0 16319 191 16 27 chrX 35910353 35913404 -126686526 - L1MA4A LINE L1 -455 6550 3467 2034 43 0 0 chrX 35913404 35913639 -126686291 - L1PA4 LINE L1 -2 6153 5919 16319 191 16 27 chrX 35913639 35915190 -126684740 - L1MA4A LINE L1 -3538 3467 1920 1956 106 4 0 chrX 35915190 35915446 -126684484 + AluSp SINE Alu 39 295 -18 16319 191 16 27 chrX 35915446 35916195 -126683735 - L1MA4A LINE L1 -5085 1920 1164 383 303 28 0 chrX 35916399 35916508 -126683422 + MIR SINE MIR 127 238 -24 450 292 48 20 chrX 35917124 35917374 -126682556 - L1MC4a LINE L1 -1907 5901 5645 623 254 33 81 chrX 35917884 35918122 -126681808 - MIR SINE MIR -32 230 2 570 203 45 15 chrX 35918411 35918544 -126681386 + MIR SINE MIR 31 167 -95 2772 13 0 10 chrX 35919419 35919729 -126680201 - AluYb8 SINE Alu -11 307 1 749 230 35 11 chrX 35920441 35920564 -126679366 + MER5B DNA MER1_type 1 131 -47 279 0 0 0 chrX 35920564 35920595 -126679335 + (TG)n Simple_repeat Simple_repeat 2 32 0 749 230 35 11 chrX 35920595 35920645 -126679285 + MER5B DNA MER1_type 131 178 0 500 309 44 0 chrX 35920775 35920938 -126678992 + MIR SINE MIR 36 204 -58 533 306 105 31 chrX 35921018 35921341 -126678589 + L3 LINE CR1 665 1011 -566 1090 258 98 44 chrX 35921413 35921820 -126678110 - L2 LINE L2 0 3313 2885 724 160 37 86 chrX 35922455 35922571 -126677359 + MLT1H LTR MaLR 3 108 -441 2571 24 7 0 chrX 35922571 35922863 -126677067 - AluY SINE Alu -17 294 1 724 160 37 86 chrX 35922863 35922933 -126676997 + MLT1H LTR MaLR 108 180 -369 433 245 185 43 chrX 35923751 35923935 -126675995 - MIR SINE MIR -6 256 47 207 308 0 0 chrX 35926575 35926627 -126673303 - MIR3 SINE MIR -34 174 123 1041 131 107 94 chrX 35926790 35926840 -126673090 - L1ME1 LINE L1 -249 5917 5869 776 184 0 0 chrX 35926840 35926965 -126672965 - FLAM_A SINE Alu -8 125 1 1041 131 107 94 chrX 35926965 35927212 -126672718 - L1ME1 LINE L1 -297 5869 5616 515 263 25 0 chrX 35927212 35927330 -126672600 + MIR3 SINE MIR 43 163 -45 181 238 0 24 chrX 35927521 35927563 -126672367 + L3 LINE CR1 1523 1563 -14 2220 227 59 9 chrX 35927745 35928270 -126671660 + L1MDb LINE L1 7 557 -5852 5184 140 39 47 chrX 35928313 35929370 -126670560 + L1MD2 LINE L1 5302 6350 -9 436 220 108 65 chrX 35930186 35930418 -126669512 + LTR16A1 LTR ERVL 216 457 0 433 313 79 55 chrX 35930428 35930898 -126669032 - LTR16C LTR ERVL -9 482 2 855 234 11 6 chrX 35931333 35931508 -126668422 + MER5A DNA MER1_type 8 183 -6 783 278 70 82 chrX 35931784 35931889 -126668041 - L2 LINE L2 -11 3302 3197 351 0 0 0 chrX 35931889 35931928 -126668002 + (TG)n Simple_repeat Simple_repeat 1 39 0 783 278 70 82 chrX 35931928 35932222 -126667708 - L2 LINE L2 -116 3197 2908 22 0 0 0 chrX 35934382 35934404 -126665526 + AT_rich Low_complexity Low_complexity 1 22 0 437 214 69 0 chrX 35934932 35935063 -126664867 - MER103 DNA DNA -20 146 7 430 235 141 7 chrX 35935790 35935939 -126663991 - LTR33 LTR ERVL -6 515 347 1511 342 89 41 chrX 35936801 35937673 -126662257 + L2 LINE L2 482 1311 -2003 1422 198 86 18 chrX 35937673 35937951 -126661979 - AluJo SINE Alu -15 297 1 1511 342 89 41 chrX 35937951 35938243 -126661687 + L2 LINE L2 1311 1715 -1599 264 111 0 0 chrX 35938243 35938288 -126661642 + (CA)n Simple_repeat Simple_repeat 1 45 0 1511 342 89 41 chrX 35938288 35938407 -126661523 + L2 LINE L2 1715 1827 -1487 270 320 33 0 chrX 35938650 35938772 -126661158 + MLT1I LTR MaLR 284 409 0 707 333 66 56 chrX 35938772 35939525 -126660405 + L2 LINE L2 1830 3313 0 218 32 32 0 chrX 35940039 35940070 -126659860 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4572 176 30 19 chrX 35940278 35942434 -126657496 + L1MB7 LINE L1 3886 6173 -11 1027 161 10 0 chrX 35942463 35942656 -126657274 + L1PB1 LINE L1 6 200 -6663 9832 127 49 9 chrX 35942656 35944673 -126655257 + L1PB1 LINE L1 634 2935 -3927 438 110 96 0 chrX 35944673 35944746 -126655184 + MADE1 DNA Mariner 1 80 0 9832 127 49 9 chrX 35944746 35945625 -126654305 + L1PB1 LINE L1 2935 3777 -3085 5910 132 15 10 chrX 35945627 35946184 -126653746 + L1PB1 LINE L1 5542 6095 -772 2430 111 40 0 chrX 35946184 35946534 -126653396 + THE1B LTR MaLR 1 364 0 5910 132 15 10 chrX 35946534 35947292 -126652638 + L1PB1 LINE L1 6095 6866 -1 448 229 149 37 chrX 35947545 35947733 -126652197 + MIR SINE MIR 40 248 -14 184 162 0 54 chrX 35947700 35947737 -126652193 + L2 LINE L2 3261 3295 -18 * 22 0 0 0 chrX 35948416 35948438 -126651492 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 35948502 35948524 -126651406 + AT_rich Low_complexity Low_complexity 1 22 0 1014 212 36 40 chrX 35948777 35949051 -126650879 + MLT1D LTR MaLR 147 419 -86 3028 138 10 14 chrX 35949057 35949565 -126650365 - MLT2B2 LTR ERVL -8 507 2 525 157 0 0 chrX 35949566 35949655 -126650275 + MLT1D LTR MaLR 538 626 0 204 40 0 0 chrX 35950374 35950399 -126649531 + (CAAAG)n Simple_repeat Simple_repeat 2 26 0 264 327 140 9 chrX 35950796 35950903 -126649027 - L2 LINE L2 -11 3261 3141 292 197 41 62 chrX 35950960 35951075 -126648855 - MLT1F LTR MaLR 0 549 439 496 239 9 0 chrX 35951608 35951721 -126648209 - MLT1L LTR MaLR -384 231 118 1391 317 168 19 chrX 35951766 35952850 -126647080 - L2 LINE L2 -508 2806 1561 1979 160 0 0 chrX 35952989 35953283 -126646647 - AluJb SINE Alu -18 294 1 398 247 41 10 chrX 35953309 35953406 -126646524 - MLT1L LTR MaLR -365 250 151 344 248 41 41 chrX 35953564 35953709 -126646221 - L1ME4a LINE L1 -3 6118 5974 255 31 0 0 chrX 35953765 35953797 -126646133 + (TG)n Simple_repeat Simple_repeat 1 32 0 300 282 104 50 chrX 35954087 35954289 -126645641 - L1ME4a LINE L1 -823 5323 5111 304 303 55 28 chrX 35954292 35954546 -126645384 + MIR SINE MIR 2 262 0 38 39 0 0 chrX 35954551 35954603 -126645327 + AT_rich Low_complexity Low_complexity 1 52 0 255 250 0 0 chrX 35955117 35955177 -126644753 + (TA)n Simple_repeat Simple_repeat 2 61 0 1016 279 16 0 chrX 35955325 35955572 -126644358 + MIR SINE MIR 2 252 -10 1322 165 8 0 chrX 35956421 35956657 -126643273 - L1MB4 LINE L1 -57 6123 5886 191 246 92 0 chrX 35957914 35957979 -126641951 + L3b LINE CR1 1319 1389 -194 268 261 90 27 chrX 35958762 35958873 -126641057 + MLT1L LTR MaLR 375 492 -123 1788 120 89 17 chrX 35959396 35959687 -126640243 - AluSx SINE Alu 0 312 1 421 237 89 30 chrX 35959988 35960123 -126639807 - MLT1L LTR MaLR -375 240 98 381 285 56 32 chrX 35960592 35960760 -126639170 + MLT1H1 LTR MaLR 33 247 -302 531 205 54 3 chrX 35960840 35961019 -126638911 + MLT1H1 LTR MaLR 322 555 0 231 224 0 0 chrX 35961019 35961067 -126638863 + MER103 DNA DNA 45 92 -74 1181 243 8 46 chrX 35961695 35961914 -126638016 + LTR16A LTR ERVL 89 290 -160 1444 190 68 55 chrX 35961914 35962299 -126637631 - MLT1B LTR MaLR 0 390 1 1181 243 8 46 chrX 35962299 35962450 -126637480 + LTR16A LTR ERVL 290 445 -5 294 297 23 62 chrX 35963049 35963177 -126636753 - L2 LINE L2 -6 3307 3185 584 281 143 29 chrX 35963213 35963423 -126636507 + MIR SINE MIR 16 249 -13 329 239 0 46 chrX 35963620 35963729 -126636201 + MLT1H LTR MaLR 59 162 -387 1652 187 137 17 chrX 35963745 35963898 -126636032 + MLT1C LTR MaLR 1 134 -333 450 0 0 0 chrX 35963898 35963948 -126635982 + (CA)n Simple_repeat Simple_repeat 2 51 0 1652 187 137 17 chrX 35963948 35964211 -126635719 + MLT1C LTR MaLR 134 467 0 317 229 62 78 chrX 35965663 35965907 -126634023 - L1ME4a LINE L1 -1 6120 5881 190 348 11 22 chrX 35966436 35966525 -126633405 - L2 LINE L2 -334 2938 2851 1328 251 75 70 chrX 35967065 35968655 -126631275 + L1MC5 LINE L1 5522 7114 -847 808 223 41 38 chrX 35968695 35968986 -126630944 + L1MC5 LINE L1 7106 7397 -564 1221 251 21 6 chrX 35968989 35969311 -126630619 + MSTD LTR MaLR 1 327 -69 1193 194 97 19 chrX 35969311 35969631 -126630299 + MER2 DNA MER2_type 1 345 0 354 197 0 0 chrX 35969631 35969702 -126630228 + MSTD LTR MaLR 326 396 0 726 231 155 39 chrX 35969703 35970115 -126629815 + L1MC5 LINE L1 7398 7857 -104 811 227 19 34 chrX 35971581 35971615 -126628315 - MLT1E1 LTR MaLR -46 608 575 2181 153 19 6 chrX 35971615 35971974 -126627956 + MLT1A1 LTR MaLR 2 365 0 811 227 19 34 chrX 35971974 35972146 -126627784 - MLT1E1 LTR MaLR -79 575 405 400 188 136 3 chrX 35972201 35972363 -126627567 - MLT1E1 LTR MaLR -391 263 32 1601 216 27 2 chrX 35972378 35972781 -126627149 + L1M4 LINE L1 4448 4860 -1286 275 0 0 28 chrX 35972856 35972892 -126627038 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7170 57 7 19 chrX 35972892 35974510 -126625420 - SVA Other Other -756 1367 1 404 132 123 38 chrX 35974521 35974627 -126625303 - L1MCa LINE L1 -4504 1922 1808 1220 222 170 6 chrX 35974628 35975133 -126624797 - L1MDa LINE L1 -2952 3128 2541 820 239 0 11 chrX 35975138 35975326 -126624604 - MLT1A2 LTR MaLR 0 374 189 241 176 74 0 chrX 35975331 35975387 -126624543 - MLT1A2 LTR MaLR -322 52 1 2606 244 68 45 chrX 35975403 35976192 -126623738 - L1MDa LINE L1 -3563 2517 1748 2034 115 58 33 chrX 35976192 35976556 -126623374 - THE1C LTR MaLR 0 375 3 2606 244 68 45 chrX 35976556 35977692 -126622238 - L1MDa LINE L1 -4332 1748 548 264 100 0 0 chrX 35977710 35977750 -126622180 + (TC)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chrX 35977753 35977781 -126622149 + (TG)n Simple_repeat Simple_repeat 1 28 0 343 312 7 65 chrX 35977789 35977927 -126622003 - L1MDa LINE L1 -5557 513 384 371 285 57 44 chrX 35978024 35978182 -126621748 - L1MDa LINE L1 -5590 480 321 289 226 49 20 chrX 35978362 35978464 -126621466 - L1MDa LINE L1 -5902 168 64 1441 266 12 12 chrX 35979003 35979406 -126620524 + MLT1I LTR MaLR 7 409 0 945 242 40 8 chrX 35980092 35980344 -126619586 - MIR SINE MIR -1 261 2 784 272 10 0 chrX 35980372 35980567 -126619363 + MER58A DNA MER1_type 1 197 -27 419 63 0 101 chrX 35980853 35980869 -126619061 - L1MA1 LINE L1 0 6302 6286 2321 110 128 16 chrX 35980869 35981252 -126618678 + MSTA LTR MaLR 1 426 -2 419 63 0 101 chrX 35981252 35981314 -126618616 - L1MA1 LINE L1 -16 6286 6232 1162 153 10 5 chrX 35982189 35982391 -126617539 - L1PA13 LINE L1 -11 6152 5950 5320 137 19 14 chrX 35982766 35984143 -126615787 - L1PA13 LINE L1 -4 6159 4771 1438 88 0 9 chrX 35984173 35984389 -126615541 - L1MA4A LINE L1 0 6303 6090 225 154 0 0 chrX 35984389 35984428 -126615502 + (TA)n Simple_repeat Simple_repeat 2 40 0 238 229 33 90 chrX 35984428 35984488 -126615442 + L1ME1 LINE L1 4757 4808 -1338 1613 190 6 34 chrX 35984488 35984809 -126615121 + AluJo SINE Alu 1 312 0 238 229 33 90 chrX 35984809 35984870 -126615060 + L1ME1 LINE L1 4808 4871 -1275 1164 267 52 35 chrX 35984897 35985324 -126614606 - MLT1C LTR MaLR 0 467 34 540 297 90 44 chrX 35985331 35985742 -126614188 + L1ME1 LINE L1 4876 5305 -841 247 239 97 26 chrX 35985747 35985902 -126614028 + L1ME1 LINE L1 5318 5483 -2325 361 363 19 0 chrX 35986039 35986196 -126613734 + L1ME1 LINE L1 5752 5911 -255 215 333 45 9 chrX 35986428 35986531 -126613399 + L3b LINE CR1 1265 1371 -212 330 368 51 0 chrX 35986531 35986648 -126613282 + MIR3 SINE MIR 3 125 -83 284 230 58 0 chrX 35986649 35986736 -126613194 - MER69 DNA AcHobo -2336 190 99 522 156 10 10 chrX 35987267 35987363 -126612567 + MER69 DNA AcHobo 547 642 -584 * 1554 187 55 31 chrX 35987361 35987765 -126612165 + MER69 DNA AcHobo 2038 2456 -70 1736 116 0 4 chrX 35987765 35988023 -126611907 - L1PA15 LINE L1 0 6165 5909 1554 187 55 31 chrX 35988023 35988094 -126611836 + MER69 DNA AcHobo 2456 2524 -2 283 259 36 45 chrX 35988334 35988446 -126611484 - MIR SINE MIR 0 262 152 909 196 95 86 chrX 35988666 35989222 -126610708 + MLT2F LTR ERVL 1 663 0 1241 243 64 106 chrX 35989513 35990109 -126609821 + MLT1G1 LTR MaLR 1 571 -24 2279 251 54 0 chrX 35990144 35990506 -126609424 - MLT1F1 LTR MaLR 0 567 165 180 0 0 0 chrX 35990506 35990526 -126609404 + (GA)n Simple_repeat Simple_repeat 1 20 0 2279 251 54 0 chrX 35990526 35990701 -126609229 - MLT1F1 LTR MaLR -402 165 1 1261 165 29 0 chrX 35991456 35991698 -126608232 - L1MB5 LINE L1 0 6174 5926 564 130 43 65 chrX 35991698 35991836 -126608094 + L1MB5 LINE L1 5794 5928 -246 * 3804 228 115 32 chrX 35991835 35992801 -126607129 - L1M4 LINE L1 -2161 4483 3599 2045 142 7 0 chrX 35992801 35993096 -126606834 - AluSx SINE Alu -15 297 1 3804 228 115 32 chrX 35993096 35993806 -126606124 - L1M4 LINE L1 -3045 3599 2661 910 98 0 0 chrX 35993815 35993948 -126605982 - L1MA1 LINE L1 0 6302 6170 283 47 23 0 chrX 35993951 35993994 -126605936 - MER57B LTR ERV1 0 434 391 7722 144 23 41 chrX 35993994 35995634 -126604296 + L1PA8A LINE L1 3 1622 -4738 21445 111 8 18 chrX 35995638 35999221 -126600709 + L1PA8A LINE L1 2141 5683 -763 2318 112 0 0 chrX 35999221 35999526 -126600404 + AluSg SINE Alu 1 305 -5 21445 111 8 18 chrX 35999526 36000282 -126599648 + L1PA8A LINE L1 5683 6445 -1 348 43 0 0 chrX 36000291 36000337 -126599593 + (CA)n Simple_repeat Simple_repeat 1 46 0 2749 104 7 0 chrX 36000338 36000741 -126599189 - MER57B LTR ERV1 -26 408 3 4786 84 6 3 chrX 36000743 36001437 -126598493 - L1MA2 LINE L1 -132 6172 5477 3555 244 58 32 chrX 36001432 36002912 -126597018 - L1M4 LINE L1 -3967 2678 765 * 2104 126 134 11 chrX 36002912 36003293 -126596637 - MSTA LTR MaLR 0 428 1 3555 244 58 32 chrX 36003293 36004079 -126595851 - L1M4 LINE L1 -5880 765 1 523 299 107 34 chrX 36004104 36004338 -126595592 - MIR SINE MIR -8 254 4 829 279 21 13 chrX 36004747 36004988 -126594942 + MIR SINE MIR 15 260 -2 1817 159 35 0 chrX 36005689 36006003 -126593927 - L1MC1 LINE L1 0 6333 6009 184 176 274 0 chrX 36006179 36006230 -126593700 - MIR SINE MIR -62 146 82 307 352 50 60 chrX 36006268 36006549 -126593381 - L2 LINE L2 -2 3270 2993 2005 181 20 50 chrX 36007186 36007627 -126592303 - MSTB1 LTR MaLR -4 428 1 236 338 43 7 chrX 36007673 36007812 -126592118 + MLT1H LTR MaLR 104 247 -302 516 292 50 92 chrX 36008723 36009226 -126590704 + MLT1K LTR MaLR 99 580 -8 681 272 83 23 chrX 36009466 36009683 -126590247 + MIR SINE MIR 10 239 -23 320 274 90 9 chrX 36009903 36010025 -126589905 - MIR SINE MIR -70 138 19 191 268 0 0 chrX 36010031 36010072 -126589858 + L2 LINE L2 3148 3188 -84 267 31 0 0 chrX 36010101 36010133 -126589797 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 784 268 60 17 chrX 36010150 36010633 -126589297 - MLT1G LTR MaLR -2 553 19 267 310 52 39 chrX 36013392 36013547 -126586383 + L2 LINE L2 2244 2400 -914 3104 162 2 0 chrX 36013600 36014175 -126585755 - L1P LINE L1 -1662 4484 3909 3813 98 7 0 chrX 36014175 36014725 -126585205 + L1PA13 LINE L1 5609 6163 0 277 316 0 0 chrX 36014747 36014823 -126585107 + L2 LINE L2 2708 2783 -531 1136 94 0 20 chrX 36014841 36014990 -126584940 + AluSq/x SINE Alu 1 146 -167 390 59 8 4 chrX 36015027 36015099 -126584831 - MLT2A1 LTR ERVL 0 444 393 236 55 73 0 chrX 36015067 36015099 -126584831 + (TA)n Simple_repeat Simple_repeat 2 60 0 * 23 0 0 0 chrX 36015099 36015122 -126584808 + AT_rich Low_complexity Low_complexity 1 23 0 9872 154 36 0 chrX 36015122 36017745 -126582185 + L1PA12 LINE L1 3523 6168 0 349 250 78 26 chrX 36017804 36017920 -126582010 - MIR SINE MIR -16 246 125 1464 155 48 3 chrX 36018873 36019182 -126580748 + MER33 DNA MER1_type 1 323 -1 24 0 0 0 chrX 36020133 36020157 -126579773 + AT_rich Low_complexity Low_complexity 1 24 0 7520 224 65 21 chrX 36020201 36023149 -126576781 - L1ME1 LINE L1 -17 6149 3072 5518 91 0 44 chrX 36023163 36023530 -126576400 - L1PA8A LINE L1 -13 6118 5737 2541 58 0 6 chrX 36023530 36023843 -126576087 - AluY SINE Alu 0 311 1 5518 91 0 44 chrX 36023843 36024298 -126575632 - L1PA8A LINE L1 -394 5737 5332 14797 97 4 1 chrX 36024298 36027203 -126572727 - L1PA7 LINE L1 -1 6153 3240 22873 127 12 83 chrX 36027203 36031678 -126568252 - L1PA8A LINE L1 -1989 4157 1 635 123 35 0 chrX 36031693 36031807 -126568123 - L1P LINE L1 -803 5343 5226 3433 121 2 0 chrX 36031811 36032339 -126567591 + L1P LINE L1 4675 5203 -943 215 149 0 21 chrX 36032398 36032445 -126567485 + (TA)n Simple_repeat Simple_repeat 1 46 0 310 208 0 0 chrX 36032451 36032523 -126567407 - L1ME1 LINE L1 -3143 3003 2932 * 6963 240 54 37 chrX 36032520 36036379 -126563551 - L1MDb LINE L1 -1688 4852 909 716 291 24 47 chrX 36036923 36037263 -126562667 - L1MDb LINE L1 -6207 333 2 465 279 0 48 chrX 36037303 36037450 -126562480 + MER5A DNA MER1_type 49 188 -1 2089 101 4 4 chrX 36037621 36037939 -126561991 - AluSc SINE Alu 0 323 6 311 341 39 39 chrX 36039060 36039239 -126560691 + MER5A DNA MER1_type 4 182 -7 897 235 0 14 chrX 36039616 36039833 -126560097 - L1PB4 LINE L1 -2 6154 5941 1833 123 7 18 chrX 36040058 36040343 -126559587 - AluSx SINE Alu -1 311 30 1781 234 41 31 chrX 36040479 36041018 -126558912 + L1ME2 LINE L1 5609 6152 -12 309 263 85 8 chrX 36041039 36041157 -126558773 + L1MC5 LINE L1 7774 7900 -61 2119 69 20 56 chrX 36041197 36041500 -126558430 + AluSc SINE Alu 8 299 -10 2253 146 8 11 chrX 36041859 36042222 -126557708 - MLT1A1 LTR MaLR 0 365 4 2347 84 0 19 chrX 36042252 36042561 -126557369 - AluSg SINE Alu -7 303 1 187 295 82 0 chrX 36042627 36042688 -126557242 + L2 LINE L2 3203 3268 -4 586 259 58 42 chrX 36042879 36043068 -126556862 + MIR SINE MIR 71 262 0 1972 137 7 0 chrX 36044799 36045083 -126554847 + AluSx SINE Alu 20 305 -7 228 220 9 64 chrX 36045088 36045197 -126554733 + L1M4 LINE L1 3222 3324 -2822 884 152 25 19 chrX 36045393 36045592 -126554338 + AluSg/x SINE Alu 152 351 0 1840 162 43 0 chrX 36045957 36046162 -126553768 - MER46B DNA MER2_type -2496 235 132 1854 104 0 4 chrX 36046162 36046413 -126553517 - AluSx SINE Alu -15 297 48 1840 162 43 0 chrX 36046413 36046552 -126553378 - MER46B DNA MER2_type -2599 132 1 1572 203 122 43 chrX 36047403 36047871 -126552059 - MLT1D LTR MaLR 0 505 1 717 214 28 7 chrX 36049005 36049150 -126550780 + MIR SINE MIR 6 153 -109 1263 264 52 42 chrX 36050672 36051272 -126548658 - L1MDa LINE L1 -869 1487 626 2677 79 6 6 chrX 36051272 36051626 -126548304 - THE1A LTR MaLR 0 355 2 1263 264 52 42 chrX 36051626 36051955 -126547975 - L1MDa LINE L1 -1730 626 302 793 299 89 39 chrX 36052051 36052533 -126547397 - L1ME LINE L1 -5551 519 14 1125 120 150 0 chrX 36052565 36052765 -126547165 - MER30 DNA MER1_type 0 230 1 1725 150 82 28 chrX 36052798 36053152 -126546778 - THE1C LTR MaLR 0 375 3 483 280 89 6 chrX 36053472 36053629 -126546301 + MIR SINE MIR 83 252 -10 525 117 26 0 chrX 36053632 36053709 -126546221 - Tigger7 DNA MER2_type -1 2486 2408 1253 236 81 9 chrX 36053711 36054033 -126545897 - MER2 DNA MER2_type 0 345 1 557 108 98 0 chrX 36054033 36054132 -126545798 - Tigger7 DNA MER2_type -81 2410 2302 1863 151 43 3 chrX 36054128 36054432 -126545498 - Tigger7 DNA MER2_type -415 318 3 455 321 22 27 chrX 36054537 36054721 -126545209 + MER5A DNA MER1_type 7 189 0 211 343 0 15 chrX 36055378 36055445 -126544485 + L2 LINE L2 3207 3272 0 1250 249 45 82 chrX 36056548 36056597 -126543333 + LTR16C LTR ERVL 1 50 -441 1528 223 43 41 chrX 36056597 36057059 -126542871 + MLT1C LTR MaLR 1 463 -4 1250 249 45 82 chrX 36057059 36057519 -126542411 + LTR16C LTR ERVL 50 491 0 23 0 0 0 chrX 36058505 36058528 -126541402 + AT_rich Low_complexity Low_complexity 1 23 0 7759 78 6 5 chrX 36058528 36059654 -126540276 - L1MA2 LINE L1 0 6304 5177 1611 151 52 73 chrX 36062061 36062485 -126537445 - LTR37B LTR ERV1 -2 466 52 851 212 49 44 chrX 36063616 36063819 -126536111 + MER63A DNA MER1_type 7 210 0 491 304 18 0 chrX 36064847 36064959 -126534971 - MER91A DNA MER1_type -11 185 72 3578 195 69 7 chrX 36065214 36066133 -126533797 - Charlie2 DNA MER1_type -31 2831 1856 1189 186 69 75 chrX 36066123 36066456 -126533474 - Charlie2 DNA MER1_type -2531 331 1 * 826 164 5 62 chrX 36066470 36066665 -126533265 + MER53 DNA DNA 2 185 -4 226 167 0 0 chrX 36066849 36066885 -126533045 + L2 LINE L2 3269 3304 -9 485 249 301 41 chrX 36067078 36067397 -126532533 + L2 LINE L2 2706 3088 -225 228 143 0 0 chrX 36067488 36067523 -126532407 - MLT1J LTR MaLR -378 133 99 258 279 94 65 chrX 36067790 36068130 -126531800 - L2 LINE L2 -1723 1591 1242 208 135 0 0 chrX 36068138 36068175 -126531755 + (A)n Simple_repeat Simple_repeat 1 37 0 825 271 104 0 chrX 36068382 36068603 -126531327 + MIR SINE MIR 19 262 0 1302 303 39 7 chrX 36068890 36069303 -126530627 - LTR16A LTR ERVL 0 450 25 201 238 0 0 chrX 36069526 36069568 -126530362 + (TG)n Simple_repeat Simple_repeat 2 43 0 336 102 0 0 chrX 36070365 36070414 -126529516 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 223 283 33 33 chrX 36070532 36070624 -126529306 - L2 LINE L2 -12 3301 3210 853 248 182 24 chrX 36070754 36071089 -126528841 + LTR16C LTR ERVL 102 489 -2 1733 143 65 17 chrX 36072044 36072338 -126527592 + AluSx SINE Alu 1 308 -4 1097 148 24 29 chrX 36073975 36074185 -126525745 + MER3 DNA MER1_type 1 209 0 377 277 62 0 chrX 36076100 36076230 -126523700 + L2 LINE L2 1915 2052 -1262 385 342 50 46 chrX 36076407 36076667 -126523263 + L2 LINE L2 2158 2418 -896 1269 282 92 13 chrX 36076677 36077124 -126522806 - LTR16C LTR ERVL -9 482 1 425 338 24 24 chrX 36077125 36077335 -126522595 + L2 LINE L2 2422 2631 -683 4269 156 12 1 chrX 36077808 36078553 -126521377 + L1MB1 LINE L1 5409 6161 -7 472 340 29 66 chrX 36078621 36079077 -126520853 + L2 LINE L2 2825 3263 -9 180 263 0 0 chrX 36079362 36079400 -126520530 - L2 LINE L2 -398 2916 2879 1330 213 50 25 chrX 36079400 36079989 -126519941 + L1MDa LINE L1 2381 2973 -3567 752 251 12 25 chrX 36079989 36080017 -126519913 + L1MDa LINE L1 3722 3749 -2791 2198 172 48 78 chrX 36080017 36080069 -126519861 - MLT2B1 LTR ERVL 0 520 468 525 16 0 0 chrX 36080069 36080131 -126519799 + (TG)n Simple_repeat Simple_repeat 1 62 0 2198 172 48 78 chrX 36080131 36080614 -126519316 - MLT2B1 LTR ERVL -52 468 1 752 251 12 25 chrX 36080614 36080828 -126519102 + L1MDa LINE L1 3749 3961 -2579 378 183 37 0 chrX 36080851 36080933 -126518997 + MLT1G1 LTR MaLR 511 595 0 222 158 26 0 chrX 36081348 36081386 -126518544 - MIR SINE MIR -8 254 216 678 225 48 89 chrX 36081410 36081681 -126518249 - L1MDa LINE L1 -6263 277 18 525 223 202 41 chrX 36081682 36082111 -126517819 - MLT1G1 LTR MaLR -61 534 1 822 283 32 8 chrX 36082226 36082473 -126517457 + MIR SINE MIR 7 259 -3 33 0 0 0 chrX 36082523 36082556 -126517374 + AT_rich Low_complexity Low_complexity 1 33 0 1087 263 91 8 chrX 36083763 36084135 -126515795 - LTR16C LTR ERVL -18 473 71 196 238 48 32 chrX 36084692 36084755 -126515175 + MER5A DNA MER1_type 126 189 0 1842 193 18 20 chrX 36084810 36085204 -126514726 + MLT2C1 LTR ERVL 1 393 -4 180 327 85 45 chrX 36085244 36085574 -126514356 - L2 LINE L2 -737 2577 2235 21 57 0 0 chrX 36086003 36086038 -126513892 + AT_rich Low_complexity Low_complexity 1 35 0 1606 274 96 6 chrX 36086064 36086542 -126513388 + LTR33 LTR ERVL 1 521 0 722 303 51 4 chrX 36086676 36086910 -126513020 + MIR SINE MIR 17 261 -1 323 189 14 14 chrX 36087505 36087579 -126512351 - MLT1K LTR MaLR -4 584 511 257 221 39 79 chrX 36087579 36087632 -126512298 - LTR67 LTR ERVL -4 553 432 3998 140 31 16 chrX 36088484 36089184 -126510746 + MER50 LTR ERV1 1 711 -23 293 250 0 0 chrX 36090285 36090349 -126509581 - L2 LINE L2 0 3313 3250 1401 293 30 5 chrX 36090744 36091178 -126508752 + LTR16A LTR ERVL 1 445 -5 3231 121 73 32 chrX 36091850 36092437 -126507493 - LTR9 LTR ERV1 -1 611 1 392 269 0 37 chrX 36092463 36092571 -126507359 + L2 LINE L2 3169 3272 0 634 293 110 26 chrX 36093569 36093842 -126506088 + HAL1 LINE L1 855 1150 -1357 229 220 0 0 chrX 36093842 36093892 -126506038 - MLT2F LTR ERVL 0 663 614 2172 107 0 14 chrX 36093928 36094398 -126505532 + AluSp SINE Alu 1 466 0 1473 183 20 58 chrX 36094408 36094753 -126505177 - MLT2C1 LTR ERVL -65 332 1 1045 253 152 46 chrX 36094766 36095422 -126504508 + HAL1 LINE L1 1178 1903 -604 21732 180 14 13 chrX 36095530 36100254 -126499676 - L1PA11 LINE L1 -2 7610 2087 3007 61 13 0 chrX 36100254 36100645 -126499285 - L1PA7 LINE L1 -1 6153 5758 21732 180 14 13 chrX 36100645 36102733 -126497197 - L1PA11 LINE L1 -5525 2087 2 316 102 0 0 chrX 36102735 36102784 -126497146 + LTR24B LTR ERV1 521 569 -7 669 282 14 29 chrX 36102784 36103061 -126496869 + LTR24B-int LTR ERV1 2 274 -4849 1758 146 8 36 chrX 36103117 36103473 -126496457 + L1MB8 LINE L1 5833 6178 0 235 250 0 26 chrX 36103893 36103968 -126495962 + L3 LINE CR1 1464 1536 -41 462 177 203 57 chrX 36103968 36104126 -126495804 - MER5A DNA MER1_type 0 189 9 190 275 88 12 chrX 36104097 36104177 -126495753 + MIR3 SINE MIR 110 195 -13 * 29 28 0 0 chrX 36104657 36104693 -126495237 + AT_rich Low_complexity Low_complexity 1 36 0 315 248 31 37 chrX 36104760 36104921 -126495009 - HAL1 LINE L1 -102 2405 2246 288 211 40 13 chrX 36105243 36105319 -126494611 - HAL1 LINE L1 -355 2152 2075 1148 158 83 37 chrX 36105469 36105811 -126494119 - MSTD LTR MaLR 0 396 1 597 224 101 13 chrX 36106014 36106242 -126493688 - MER112 DNA MER1_type -4 256 9 401 240 131 26 chrX 36106507 36106736 -126493194 - MER97c DNA MER1_type? -2 1088 836 1902 236 60 33 chrX 36106829 36107381 -126492549 - MER97b DNA MER1_type? -483 570 4 284 244 115 62 chrX 36108949 36109158 -126490772 + L1ME4a LINE L1 5398 5617 -504 * 323 258 8 58 chrX 36109157 36109277 -126490653 + L1ME3A LINE L1 5558 5671 -499 2472 129 28 56 chrX 36109277 36109370 -126490560 - LTR47A LTR ERVL 0 452 358 5769 123 8 10 chrX 36109370 36110753 -126489177 + L1PA13 LINE L1 4775 6159 -4 2472 129 28 56 chrX 36110753 36111124 -126488806 - LTR47A LTR ERVL -94 358 1 1693 219 53 31 chrX 36111124 36111613 -126488317 + L1ME3A LINE L1 5667 6166 -4 603 299 58 13 chrX 36111624 36111935 -126487995 + L1ME4a LINE L1 5610 5934 -187 29369 33 14 1 chrX 36112701 36118731 -126481199 - L1PA2 LINE L1 -2 6153 3 22 35 0 0 chrX 36119011 36119040 -126480890 + AT_rich Low_complexity Low_complexity 1 29 0 1588 218 50 40 chrX 36119505 36120005 -126479925 - MLT1D LTR MaLR 0 505 1 187 42 0 0 chrX 36120007 36120031 -126479899 + L2 LINE L2 3243 3266 -6 26 0 0 0 chrX 36120345 36120371 -126479559 + AT_rich Low_complexity Low_complexity 1 26 0 334 236 22 11 chrX 36121252 36121341 -126478589 + MER5B DNA MER1_type 31 120 -58 258 234 13 13 chrX 36121359 36121436 -126478494 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 372 215 89 45 chrX 36121602 36121849 -126478081 - L1MC5 LINE L1 -226 7735 7478 649 256 60 12 chrX 36121869 36122119 -126477811 - L1MC5 LINE L1 -1958 5850 5589 14981 197 31 23 chrX 36122741 36123132 -126476798 + L1PA15 LINE L1 1171 1557 -5259 2341 101 48 22 chrX 36123132 36123487 -126476443 + THE1B LTR MaLR 1 364 0 14981 197 31 23 chrX 36123487 36126014 -126473916 + L1PA15 LINE L1 1557 4061 -2755 189 0 0 0 chrX 36126014 36126035 -126473895 + (TAA)n Simple_repeat Simple_repeat 1 21 0 14981 197 31 23 chrX 36126035 36128715 -126471215 + L1PA15 LINE L1 4061 6816 0 2383 214 34 6 chrX 36129267 36129772 -126470158 + LTR53 LTR ERVL 1 519 0 198 211 96 19 chrX 36129773 36129825 -126470105 + MIR SINE MIR 160 215 -47 263 232 43 0 chrX 36130012 36130081 -126469849 + MIR SINE MIR 183 254 -8 433 333 42 11 chrX 36130672 36130861 -126469069 + MIR3 SINE MIR 3 197 -11 207 330 85 9 chrX 36130872 36130978 -126468952 + MIR SINE MIR 21 134 -128 1391 282 116 19 chrX 36131030 36131732 -126468198 + L2 LINE L2 2495 3313 0 417 225 18 9 chrX 36131850 36131961 -126467969 + L1MCa LINE L1 163 274 -6290 352 187 13 0 chrX 36131967 36132042 -126467888 - L1MCb LINE L1 -5400 645 570 3723 210 137 38 chrX 36132071 36133535 -126466395 + L1MCa LINE L1 109 1862 -4702 3112 107 2 7 chrX 36133535 36133993 -126465937 + L1PB1 LINE L1 5695 6150 -1 3723 210 137 38 chrX 36133993 36134677 -126465253 + L1MCa LINE L1 1862 2477 -4087 35 0 0 0 chrX 36134707 36134742 -126465188 + AT_rich Low_complexity Low_complexity 1 35 0 7308 28 0 0 chrX 36134742 36135641 -126464289 - L1PA3 LINE L1 -3 6152 5254 5922 103 3 56 chrX 36135645 36136878 -126463052 + L1MC/D LINE L1 4465 5630 -743 1122 190 0 22 chrX 36136874 36137100 -126462830 + L1MC3 LINE L1 5487 5707 -637 * 457 203 78 8 chrX 36137099 36137227 -126462703 + L1M1 LINE L1 5 141 -7424 * 6868 160 17 22 chrX 36137216 36139492 -126460438 + L1M1 LINE L1 2929 5192 -2373 2325 109 44 0 chrX 36139492 36139872 -126460058 + L1MA2 LINE L1 5904 6304 0 6536 165 35 30 chrX 36139891 36141308 -126458622 + L1MC3 LINE L1 5693 7116 -669 1737 158 11 45 chrX 36141309 36141689 -126458241 + L1MA7 LINE L1 5915 6281 -10 880 129 12 18 chrX 36141712 36141875 -126458055 + L1MC3 LINE L1 7617 7778 -7 1731 211 36 38 chrX 36142567 36143064 -126456866 - L1ME3A LINE L1 -29 6141 5646 644 299 46 11 chrX 36143111 36143338 -126456592 + MIR SINE MIR 30 261 -1 1472 233 119 53 chrX 36143888 36144566 -126455364 + MER50 LTR ERV1 10 732 -2 206 250 0 15 chrX 36144837 36144905 -126455025 + CT-rich Low_complexity Low_complexity 2 68 0 853 285 88 21 chrX 36144920 36145530 -126454400 - L1ME4a LINE L1 -206 5915 5265 4451 71 5 2 chrX 36146078 36146670 -126453260 - L1PB2 LINE L1 -1 6150 5557 218 259 12 82 chrX 36146670 36146755 -126453175 - L2 LINE L2 -12 3260 3182 411 343 36 0 chrX 36147006 36147143 -126452787 + MIR SINE MIR 10 151 -111 2328 108 0 6 chrX 36147143 36147457 -126452473 + AluSx SINE Alu 1 312 0 388 304 89 15 chrX 36148368 36148503 -126451427 - MIR SINE MIR -113 149 5 24 32 0 0 chrX 36149424 36149455 -126450475 + AT_rich Low_complexity Low_complexity 1 31 0 467 309 77 5 chrX 36150735 36150929 -126449001 - L2 LINE L2 0 3313 3106 180 0 0 0 chrX 36151139 36151159 -126448771 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 238 200 0 15 chrX 36151821 36151886 -126448044 + L1MC4 LINE L1 6646 6709 -1333 2548 164 66 77 chrX 36151915 36152488 -126447442 - MLT1F1 LTR MaLR 0 567 1 29 0 0 0 chrX 36152601 36152630 -126447300 + AT_rich Low_complexity Low_complexity 1 29 0 466 276 12 77 chrX 36152740 36152910 -126447020 - MIR SINE MIR -92 170 12 311 358 64 32 chrX 36153007 36153194 -126446736 - L2 LINE L2 -217 3055 2863 288 0 0 0 chrX 36154237 36154269 -126445661 + (CA)n Simple_repeat Simple_repeat 2 33 0 764 257 62 5 chrX 36155998 36156219 -126443711 - MIR SINE MIR -6 256 25 2643 91 65 19 chrX 36156449 36156877 -126443053 + LTR7 LTR ERV1 1 448 -2 185 352 72 56 chrX 36156959 36156989 -126442941 - MIR SINE MIR -99 163 135 947 240 32 0 chrX 36156989 36157109 -126442821 - MER58A DNA MER1_type -2196 224 92 459 0 0 0 chrX 36157109 36157160 -126442770 + (CAATA)n Simple_repeat Simple_repeat 1 51 0 947 240 32 0 chrX 36157160 36157256 -126442674 - MER58A DNA MER1_type -2328 92 1 185 352 72 56 chrX 36157256 36157350 -126442580 - MIR SINE MIR -127 135 37 649 316 240 17 chrX 36157353 36157820 -126442110 - L2 LINE L2 -1 3312 2745 914 233 46 13 chrX 36158609 36158955 -126440975 + LTR16A LTR ERVL 25 450 0 246 171 271 0 chrX 36159514 36159584 -126440346 + MIR SINE MIR 168 256 -6 26 50 0 0 chrX 36160405 36160445 -126439485 + AT_rich Low_complexity Low_complexity 1 40 0 1125 117 35 225 chrX 36161052 36161244 -126438686 - LTR48B LTR ERV1 0 644 571 10060 30 7 156 chrX 36161244 36162874 -126437056 - SVA Other Other 0 1386 1 1125 117 35 225 chrX 36162874 36163137 -126436793 - LTR48B LTR ERV1 -73 571 260 239 96 77 58 chrX 36163152 36163204 -126436726 - LTR48B LTR ERV1 -556 88 36 411 314 140 29 chrX 36163232 36163617 -126436313 + L1ME LINE L1 4607 5034 -1112 194 54 0 54 chrX 36163630 36163667 -126436263 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 795 213 0 0 chrX 36163735 36163890 -126436040 + MER58B DNA MER1_type 187 341 0 322 294 41 64 chrX 36163923 36164141 -126435789 + L1ME LINE L1 5173 5385 -761 2143 149 18 12 chrX 36164183 36164518 -126435412 + MER1B DNA MER1_type 1 337 0 420 276 65 58 chrX 36164543 36164662 -126435268 + L1ME LINE L1 5485 5602 -519 2428 67 3 0 chrX 36164662 36164959 -126434971 - AluY SINE Alu -13 298 1 420 276 65 58 chrX 36164959 36165132 -126434798 + L1ME LINE L1 5602 5779 -342 23 0 0 0 chrX 36165183 36165206 -126434724 + AT_rich Low_complexity Low_complexity 1 23 0 1491 158 26 84 chrX 36167245 36167555 -126432375 + AluJo SINE Alu 1 292 -20 304 340 34 0 chrX 36167661 36167867 -126432063 + L1ME LINE L1 5520 5732 -389 2596 105 17 7 chrX 36167868 36168277 -126431653 + L1MA2 LINE L1 5892 6304 0 592 202 8 0 chrX 36168773 36168897 -126431033 - L1MA10 LINE L1 -7 6327 6203 22 35 0 0 chrX 36168959 36168988 -126430942 + AT_rich Low_complexity Low_complexity 1 29 0 288 148 0 0 chrX 36168998 36169052 -126430878 + L1ME4a LINE L1 6065 6118 -3 198 0 0 0 chrX 36169790 36169812 -126430118 + (TG)n Simple_repeat Simple_repeat 2 23 0 265 214 0 18 chrX 36170869 36170925 -126429005 + MIR SINE MIR 97 151 -111 1755 269 26 2 chrX 36171921 36172382 -126427548 + LTR16C LTR ERVL 2 473 -18 222 208 0 0 chrX 36172607 36172660 -126427270 + GA-rich Low_complexity Low_complexity 1 53 0 616 148 70 0 chrX 36173704 36173819 -126426111 - L2 LINE L2 0 3313 3191 508 308 76 7 chrX 36174183 36174592 -126425338 + L1M4 LINE L1 4013 4449 -1697 192 40 0 0 chrX 36174659 36174684 -126425246 + (TG)n Simple_repeat Simple_repeat 2 26 0 347 219 0 24 chrX 36174793 36174875 -126425055 + L1MC4 LINE L1 6624 6703 -1339 390 173 0 0 chrX 36176370 36176445 -126423485 + CT-rich Low_complexity Low_complexity 4 78 0 584 264 72 0 chrX 36177743 36177910 -126422020 + MIR SINE MIR 53 231 -31 888 275 196 0 chrX 36178000 36178342 -126421588 - MLT1I LTR MaLR 0 409 1 204 348 29 0 chrX 36178465 36178534 -126421396 + L2 LINE L2 2996 3066 -206 205 234 0 0 chrX 36179350 36179397 -126420533 - L2 LINE L2 -5 3308 3262 290 372 71 64 chrX 36179448 36179744 -126420186 + L2 LINE L2 2932 3229 -43 254 329 37 0 chrX 36179956 36180038 -126419892 + MIR SINE MIR 66 150 -58 1986 241 57 10 chrX 36180115 36180608 -126419322 + MLT1G1 LTR MaLR 75 590 -5 918 251 60 32 chrX 36181346 36181554 -126418376 + MIR SINE MIR 5 223 -39 2449 148 52 2 chrX 36181554 36181960 -126417970 + MSTB LTR MaLR 1 426 0 918 251 60 32 chrX 36181960 36182002 -126417928 + MIR SINE MIR 223 262 0 824 285 69 26 chrX 36182400 36182821 -126417109 - LTR16A LTR ERVL -5 445 7 575 254 133 0 chrX 36183169 36183342 -126416588 - MIR SINE MIR -18 244 49 1081 271 42 8 chrX 36184560 36184918 -126415012 + LTR33 LTR ERVL 90 459 -62 344 296 17 9 chrX 36184950 36185065 -126414865 - MER94 DNA DNA 0 134 19 527 275 70 64 chrX 36186404 36186900 -126413030 + MLT1G3 LTR MaLR 1 588 -7 436 341 98 0 chrX 36186915 36187161 -126412769 + L3b LINE CR1 1112 1381 -202 1892 142 42 12 chrX 36187673 36188005 -126411925 - MER2 DNA MER2_type -1 343 2 280 269 120 37 chrX 36189159 36189189 -126410741 + MIR SINE MIR 119 145 -117 216 97 0 0 chrX 36189189 36189220 -126410710 + (TAA)n Simple_repeat Simple_repeat 2 32 0 280 269 120 37 chrX 36189220 36189297 -126410633 + MIR SINE MIR 145 235 -27 337 276 47 24 chrX 36189447 36189574 -126410356 + MIR SINE MIR 133 262 0 1023 292 53 42 chrX 36189682 36190138 -126409792 - LTR16B LTR ERVL 0 464 4 346 247 79 46 chrX 36190684 36190950 -126408980 - LTR48 LTR ERV1 0 739 353 23 0 0 0 chrX 36191832 36191855 -126408075 + AT_rich Low_complexity Low_complexity 1 23 0 314 293 83 6 chrX 36192087 36192244 -126407686 + L1MC4a LINE L1 5694 5862 -1946 4237 83 76 12 chrX 36192716 36193321 -126406609 - LTR9B LTR ERV1 0 644 1 180 179 0 0 chrX 36193819 36193858 -126406072 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 36193904 36193926 -126406004 + AT_rich Low_complexity Low_complexity 1 22 0 360 311 84 44 chrX 36194255 36194528 -126405402 + L1MEd LINE L1 599 882 -5237 28850 113 14 58 chrX 36194574 36201009 -126398921 + L1PA7 LINE L1 12 6147 -7 193 0 61 30 chrX 36201012 36201045 -126398885 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 443 312 77 29 chrX 36201058 36201603 -126398327 + L1MEd LINE L1 993 1563 -4747 1363 200 56 7 chrX 36201605 36201890 -126398040 - MLT1E LTR MaLR 0 593 295 387 273 19 7 chrX 36202081 36202235 -126397695 + L1MEd LINE L1 3286 3441 -2688 672 248 96 39 chrX 36202279 36202804 -126397126 - MER34B LTR ERV1 0 585 5 1548 259 30 24 chrX 36202821 36203447 -126396483 + L1MEd LINE L1 3508 4137 -1992 1744 157 3 65 chrX 36204842 36205166 -126394764 - AluJb SINE Alu -8 304 1 235 195 0 134 chrX 36205242 36205324 -126394606 + MER91B DNA MER1_type 9 79 -111 441 0 0 0 chrX 36205655 36205704 -126394226 + (TG)n Simple_repeat Simple_repeat 2 50 0 509 199 35 115 chrX 36205868 36206094 -126393836 + MLT1D LTR MaLR 1 208 -297 3037 193 40 19 chrX 36206169 36206750 -126393180 - MLT1E LTR MaLR 0 593 1 1848 113 30 0 chrX 36206772 36206917 -126393013 + L1MA9 LINE L1 6002 6141 -171 342 0 0 0 chrX 36206917 36206955 -126392975 + (CA)n Simple_repeat Simple_repeat 1 38 0 1848 113 30 0 chrX 36206955 36207109 -126392821 + L1MA9 LINE L1 6141 6310 -2 262 355 0 0 chrX 36207116 36207178 -126392752 + MER91B DNA MER1_type 128 189 -1 294 304 39 10 chrX 36207891 36207993 -126391937 + L2 LINE L2 2911 3015 -257 232 286 11 0 chrX 36208148 36208239 -126391691 - L1MC4 LINE L1 -11 8031 7940 412 317 60 26 chrX 36208333 36208715 -126391215 - L1MC5 LINE L1 -197 7764 7370 394 233 62 27 chrX 36208751 36208897 -126391033 - L1MC4 LINE L1 -787 8066 7916 1453 257 94 15 chrX 36209056 36209511 -126390419 - LTR16C LTR ERVL 0 491 1 892 257 239 19 chrX 36209513 36210390 -126389540 - L1MC4 LINE L1 -900 7719 6843 246 281 38 50 chrX 36210390 36210520 -126389410 - L1PA8A LINE L1 -305 5826 5697 321 26 0 0 chrX 36210520 36210558 -126389372 + (TG)n Simple_repeat Simple_repeat 1 38 0 246 281 38 50 chrX 36210558 36210587 -126389343 - L1PA8A LINE L1 -434 5697 5669 348 278 110 43 chrX 36210667 36211059 -126388871 - L1MC4 LINE L1 -1945 5012 4595 * 1564 261 68 38 chrX 36211058 36211590 -126388340 + L1M4b LINE L1 29 576 -6283 2080 235 83 42 chrX 36211590 36212249 -126387681 - L1MC4 LINE L1 -5321 1538 853 278 194 16 16 chrX 36212260 36212322 -126387608 + MLT1H1 LTR MaLR 69 130 -425 622 238 108 30 chrX 36212339 36212614 -126387316 + MLT1H1 LTR MaLR 244 553 -2 1682 151 0 74 chrX 36212780 36213104 -126386826 + AluJb SINE Alu 1 300 -12 364 358 85 24 chrX 36213518 36213848 -126386082 - L1M4 LINE L1 -1220 4926 4577 309 308 62 0 chrX 36213859 36214067 -126385863 - L1M4 LINE L1 -1700 4446 4226 277 300 25 0 chrX 36214122 36214242 -126385688 - L1M3 LINE L1 -707 5476 5354 21 0 0 0 chrX 36214336 36214357 -126385573 + AT_rich Low_complexity Low_complexity 1 21 0 237 128 0 0 chrX 36214421 36214460 -126385470 + MLT1B LTR MaLR 58 96 -294 329 269 68 10 chrX 36214463 36214771 -126385159 - L1M3 LINE L1 -2929 3217 2892 420 287 34 72 chrX 36215287 36215936 -126383994 - L1M3 LINE L1 -3328 2818 2195 283 323 24 40 chrX 36216314 36216565 -126383365 - HAL1 LINE L1 -797 1710 1464 305 329 82 29 chrX 36216736 36216906 -126383024 + L2 LINE L2 190 368 -2946 555 306 62 47 chrX 36217909 36218295 -126381635 + LTR16C LTR ERVL 83 474 -17 322 248 73 37 chrX 36218896 36219005 -126380925 + MER5A DNA MER1_type 77 189 0 4333 125 47 26 chrX 36219763 36220538 -126379392 - L1PA16 LINE L1 -6 6160 5370 210 71 0 0 chrX 36220817 36220845 -126379085 + (TG)n Simple_repeat Simple_repeat 2 29 0 442 223 23 0 chrX 36220969 36221099 -126378831 + (CATATA)n Simple_repeat Simple_repeat 3 135 0 248 168 50 12 chrX 36221335 36221496 -126378434 + (TA)n Simple_repeat Simple_repeat 1 167 0 628 289 28 41 chrX 36221878 36222054 -126377876 + LTR16A1 LTR ERVL 171 343 -114 2950 191 4 11 chrX 36222054 36222598 -126377332 + MLT1F LTR MaLR 1 540 -2 628 289 28 41 chrX 36222598 36222712 -126377218 + LTR16A1 LTR ERVL 343 457 0 677 262 74 15 chrX 36222714 36222916 -126377014 + MIR SINE MIR 49 262 0 2187 110 0 7 chrX 36223865 36224165 -126375765 - AluSx SINE Alu -14 298 1 679 275 58 47 chrX 36224673 36224761 -126375169 + L1MC4a LINE L1 5518 5603 -2205 1292 264 149 7 chrX 36224761 36225216 -126374714 - LTR33 LTR ERVL -1 520 1 679 275 58 47 chrX 36225216 36225370 -126374560 + L1MC4a LINE L1 5603 5768 -2040 1436 183 90 17 chrX 36225370 36225660 -126374270 + AluJo SINE Alu 1 311 -1 679 275 58 47 chrX 36225660 36225758 -126374172 + L1MC4a LINE L1 5768 5863 -1945 923 189 44 0 chrX 36226960 36227140 -126372790 + MER5A DNA MER1_type 2 189 0 267 316 59 52 chrX 36227163 36227299 -126372631 + MER5A DNA MER1_type 1 137 -52 208 292 26 131 chrX 36228705 36228972 -126370958 - L2 LINE L2 -3 3310 3072 9178 175 27 11 chrX 36230398 36232087 -126367843 + L1M1 LINE L1 13 1729 -5836 541 303 51 127 chrX 36232092 36233156 -126366774 + L2 LINE L2 2290 3267 -5 1749 60 38 17 chrX 36233398 36233633 -126366297 + L1PA8A LINE L1 5892 6131 0 22 0 0 0 chrX 36234289 36234311 -126365619 + AT_rich Low_complexity Low_complexity 1 22 0 229 299 11 46 chrX 36234398 36234485 -126365445 - MIR SINE MIR -60 202 119 240 374 112 5 chrX 36234582 36234769 -126365161 + L3b LINE CR1 1132 1338 -245 456 304 29 108 chrX 36234788 36235028 -126364902 - L2 LINE L2 -18 3254 3034 187 338 75 38 chrX 36235064 36235144 -126364786 + L2 LINE L2 3192 3274 -39 2424 157 34 2 chrX 36235251 36235666 -126364264 - MSTA LTR MaLR 0 428 1 9819 157 11 11 chrX 36235666 36237174 -126362756 - MSTA-int LTR MaLR 0 1651 140 2034 80 0 45 chrX 36237174 36237460 -126362470 + AluY SINE Alu 35 307 -4 9819 157 11 11 chrX 36237460 36237601 -126362329 - MSTA-int LTR MaLR -1511 140 1 2317 154 29 12 chrX 36237601 36238022 -126361908 - MSTA LTR MaLR 0 428 1 198 0 0 0 chrX 36239119 36239141 -126360789 + (TG)n Simple_repeat Simple_repeat 1 22 0 794 303 67 0 chrX 36240216 36240454 -126359476 - MIR SINE MIR 0 262 9 594 134 0 0 chrX 36240561 36240643 -126359287 + AluS SINE Alu 3 84 -228 11980 92 10 0 chrX 36240686 36241352 -126358578 - L1PA7 LINE L1 -6 6148 5490 1984 116 0 0 chrX 36241352 36241620 -126358310 - AluSg1 SINE Alu -7 302 35 11980 92 10 0 chrX 36241620 36243431 -126356499 - L1PA7 LINE L1 -664 5490 3663 7562 96 7 0 chrX 36243431 36244553 -126355377 - L1PA7 LINE L1 -3376 2770 1641 9465 171 17 13 chrX 36244700 36246639 -126353291 + L1P LINE L1 2787 4733 -1413 773 86 43 0 chrX 36246916 36247033 -126352897 + L1PA12 LINE L1 6047 6168 0 1079 249 23 34 chrX 36247454 36247808 -126352122 - MLT1E2 LTR MaLR -276 350 1 724 258 47 9 chrX 36247814 36248027 -126351903 - L2 LINE L2 -724 2590 2370 278 211 0 0 chrX 36248034 36248091 -126351839 - MLT1I LTR MaLR -7 402 346 507 96 0 0 chrX 36248121 36248194 -126351736 - L1PB4 LINE L1 -7 6149 6077 761 291 104 13 chrX 36248660 36248976 -126350954 - MLT1I LTR MaLR -2 407 63 4345 296 70 25 chrX 36249027 36250539 -126349391 - L2 LINE L2 -942 2372 793 262 288 72 9 chrX 36250626 36250737 -126349193 + MIR SINE MIR 84 201 -61 476 224 0 0 chrX 36250737 36250865 -126349065 + FRAM SINE Alu 62 189 0 181 348 169 0 chrX 36251686 36251775 -126348155 + MIR SINE MIR 24 127 -81 31 68 0 0 chrX 36252036 36252095 -126347835 + AT_rich Low_complexity Low_complexity 1 59 0 2375 11 0 0 chrX 36252626 36252896 -126347034 - L1PA2 LINE L1 -1 6154 5885 228 35 0 0 chrX 36252898 36252927 -126347003 + L1P LINE L1 5063 5091 -1055 323 164 60 15 chrX 36253482 36253549 -126346381 - LTR67 LTR ERVL -4 553 484 205 272 85 66 chrX 36253941 36254122 -126345808 + MIR3 SINE MIR 12 201 -7 799 285 66 31 chrX 36254467 36254786 -126345144 + MLT1I LTR MaLR 80 409 0 5833 116 35 0 chrX 36255947 36257033 -126342897 - L1PA15 LINE L1 -6 6159 5080 977 311 13 19 chrX 36257317 36257787 -126342143 - L1ME LINE L1 -349 5821 5355 197 364 8 25 chrX 36258108 36258226 -126341704 + MIR SINE MIR 9 124 -138 187 317 170 15 chrX 36258244 36258585 -126341345 + L2 LINE L2 626 1019 -2295 943 179 6 0 chrX 36258748 36258904 -126341026 + MER5A DNA MER1_type 1 157 -32 315 306 67 22 chrX 36258988 36259122 -126340808 - MER5A DNA MER1_type -49 140 1 335 324 89 19 chrX 36259417 36259732 -126340198 + L2 LINE L2 1826 2162 -1152 4364 165 12 48 chrX 36259766 36260872 -126339058 - L1MB7 LINE L1 -19 6663 5588 4902 100 8 5 chrX 36260894 36261844 -126338086 + HERVL-B3 LTR ERVL 4666 5654 0 2070 191 28 74 chrX 36261844 36262425 -126337505 + MLT2B3 LTR ERVL 1 554 0 9753 219 28 17 chrX 36262427 36265241 -126334689 - L1MB7 LINE L1 -1086 5558 2713 285 258 0 0 chrX 36265216 36265282 -126334648 + MLT1-int LTR MaLR 671 736 -635 * 4789 215 54 27 chrX 36265384 36266643 -126333287 - L1MB7 LINE L1 -5249 1293 1 278 302 19 38 chrX 36266686 36266792 -126333138 + L2 LINE L2 2297 2400 -914 28 29 0 0 chrX 36267888 36267923 -126332007 + AT_rich Low_complexity Low_complexity 1 35 0 182 37 37 0 chrX 36267972 36267999 -126331931 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2036 235 123 5 chrX 36268257 36268844 -126331086 - L1ME3 LINE L1 0 6162 5507 264 111 0 0 chrX 36269284 36269329 -126330601 + (TC)n Simple_repeat Simple_repeat 1 45 0 659 243 45 28 chrX 36271173 36271350 -126328580 + MER5A DNA MER1_type 9 188 -1 192 77 0 0 chrX 36271452 36271478 -126328452 + (T)n Simple_repeat Simple_repeat 1 26 0 4760 209 114 30 chrX 36272158 36272266 -126327664 + L1MDa LINE L1 19 117 -6423 2461 89 0 3 chrX 36272266 36272580 -126327350 + AluSq SINE Alu 1 313 0 4760 209 114 30 chrX 36272580 36273893 -126326037 + L1MDa LINE L1 117 1874 -4666 2053 215 40 7 chrX 36273903 36274498 -126325432 + L1MD2 LINE L1 5695 6358 -1 261 0 0 0 chrX 36275823 36275852 -126324078 + (TG)n Simple_repeat Simple_repeat 1 29 0 375 105 0 0 chrX 36275852 36275909 -126324021 + (GA)n Simple_repeat Simple_repeat 2 58 0 258 375 25 17 chrX 36276270 36276390 -126323540 + L2 LINE L2 3152 3272 0 2958 218 51 19 chrX 36276776 36277527 -126322403 + L1PA16 LINE L1 3314 4088 -2058 * 44041 36 6 1 chrX 36277524 36283650 -126316280 + L1PA3 LINE L1 1 6152 -3 279 0 0 0 chrX 36283653 36283684 -126316246 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5927 175 26 2 chrX 36283725 36285761 -126314169 + L1PA16 LINE L1 4074 6157 -9 411 254 65 53 chrX 36285820 36285989 -126313941 - HAL1 LINE L1 -1323 1184 1014 1478 272 79 10 chrX 36286884 36287365 -126312565 - LTR33 LTR ERVL -7 514 1 2700 39 0 0 chrX 36287804 36288114 -126311816 + AluY SINE Alu 1 310 -1 1431 206 64 0 chrX 36288430 36288774 -126311156 - MER69 DNA AcHobo 0 2526 2161 1402 298 95 4 chrX 36288769 36289243 -126310687 - MER69 DNA AcHobo -708 518 2 * 395 270 66 66 chrX 36289470 36289607 -126310323 - L2 LINE L2 0 3272 3136 528 287 89 25 chrX 36290666 36290868 -126309062 + MIR SINE MIR 48 262 0 235 357 0 0 chrX 36291471 36291527 -126308403 + L2 LINE L2 3205 3260 -12 183 80 0 0 chrX 36291529 36291554 -126308376 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 209 293 4 21 chrX 36291876 36291956 -126307974 + MER5A DNA MER1_type 2 91 -98 28 29 0 0 chrX 36292816 36292851 -126307079 + AT_rich Low_complexity Low_complexity 1 35 0 621 323 26 18 chrX 36292851 36293080 -126306850 - MIR SINE MIR -30 232 2 239 221 12 0 chrX 36293280 36293366 -126306564 + (TA)n Simple_repeat Simple_repeat 1 87 0 380 276 16 0 chrX 36293644 36293755 -126306175 - LTR16A LTR ERVL -96 354 242 470 146 19 39 chrX 36293755 36293858 -126306072 + MER53 DNA DNA 1 101 -88 503 285 29 0 chrX 36293891 36294028 -126305902 - LTR16A LTR ERVL -214 236 96 5034 206 31 11 chrX 36294304 36295316 -126304614 + MER45B DNA AcHobo 1 1032 -8 723 290 0 11 chrX 36295826 36296009 -126303921 - MIR SINE MIR -41 221 41 698 233 54 66 chrX 36296127 36296385 -126303545 + Charlie2 DNA MER1_type 76 330 -2532 * 1311 243 51 9 chrX 36296373 36296801 -126303129 + Charlie2 DNA MER1_type 1853 2298 -564 4797 89 9 12 chrX 36296801 36297466 -126302464 + L1PA10 LINE L1 5390 6052 -116 960 201 211 27 chrX 36297472 36297959 -126301971 + Charlie2 DNA MER1_type 2282 2858 -4 414 257 125 13 chrX 36298443 36298595 -126301335 + MIR SINE MIR 55 223 -39 314 286 68 15 chrX 36298693 36298826 -126301104 - MARNA DNA Mariner -77 509 370 765 181 112 32 chrX 36298852 36299040 -126300890 - L1MD2 LINE L1 -11 6348 6146 230 261 58 35 chrX 36299210 36299436 -126300494 + L1M4 LINE L1 5096 5326 -820 280 254 0 0 chrX 36299465 36299532 -126300398 - L1ME LINE L1 -4809 1452 1386 2686 92 0 5 chrX 36299612 36299977 -126299953 - L1PB1 LINE L1 -1 6150 5787 348 24 0 0 chrX 36299977 36300018 -126299912 + (TG)n Simple_repeat Simple_repeat 2 42 0 14790 161 85 7 chrX 36300024 36304170 -126295760 - L1PBa LINE L1 -2392 4470 1 1548 275 77 44 chrX 36304179 36305453 -126294477 - L1ME LINE L1 -4747 1333 51 210 302 0 0 chrX 36305761 36305824 -126294106 - MIR SINE MIR 0 262 200 2353 224 35 26 chrX 36305875 36306597 -126293333 - L1M4 LINE L1 -1538 4608 3881 216 214 0 0 chrX 36307223 36307265 -126292665 + T-rich Low_complexity Low_complexity 1 42 0 818 220 28 0 chrX 36307436 36307618 -126292312 - MER5A DNA MER1_type -2 187 1 320 332 38 38 chrX 36307628 36307810 -126292120 + MIR SINE MIR 33 212 -50 1580 155 15 4 chrX 36309220 36309484 -126290446 + AluJo SINE Alu 43 309 -3 297 109 0 0 chrX 36309632 36309678 -126290252 + (CA)n Simple_repeat Simple_repeat 1 46 0 862 282 194 24 chrX 36309697 36310115 -126289815 - L2 LINE L2 0 3313 2825 243 61 0 0 chrX 36310115 36310148 -126289782 + (TG)n Simple_repeat Simple_repeat 1 33 0 2029 247 138 25 chrX 36310756 36311278 -126288652 + MLT1G LTR MaLR 10 590 0 431 326 87 26 chrX 36311672 36312288 -126287642 + L1ME2 LINE L1 5258 5906 -258 392 206 6 120 chrX 36312777 36312952 -126286978 - L1ME4a LINE L1 0 6121 5967 336 294 68 25 chrX 36313082 36313245 -126286685 - L1ME4a LINE L1 -2336 5472 5303 385 312 89 49 chrX 36313508 36314036 -126285894 - L1ME4a LINE L1 -1185 4961 4416 864 293 95 8 chrX 36314458 36314827 -126285103 - MLT1I LTR MaLR -8 401 1 1033 135 36 26 chrX 36317552 36317744 -126282186 + THE1C LTR MaLR 180 373 -2 1001 244 56 30 chrX 36317745 36318011 -126281919 - MLT1H1 LTR MaLR -282 273 1 305 334 103 23 chrX 36318048 36318350 -126281580 + L2 LINE L2 1798 2123 -1191 1754 190 24 0 chrX 36519301 36519633 -126080297 - MER58B DNA MER1_type -1 340 1 783 293 98 0 chrX 36519885 36520131 -126079799 + L2 LINE L2 2510 2779 -535 1478 270 23 3 chrX 36520170 36520559 -126079371 - LTR16A LTR ERVL -38 412 16 1343 265 58 44 chrX 36520574 36520736 -126079194 + L2 LINE L2 2828 2986 -327 2562 70 0 0 chrX 36520736 36521038 -126078892 - AluY SINE Alu -9 302 1 1343 265 58 44 chrX 36521038 36521354 -126078576 + L2 LINE L2 2986 3313 0 289 193 0 18 chrX 36522609 36522666 -126077264 - LTR67 LTR ERVL -400 157 102 226 298 106 0 chrX 36522843 36522937 -126076993 - L2 LINE L2 0 3272 3169 218 365 0 0 chrX 36523550 36523635 -126076295 - MIR SINE MIR -92 170 86 286 292 28 0 chrX 36523933 36524005 -126075925 + (CATG)n Simple_repeat Simple_repeat 1 74 0 2896 143 0 19 chrX 36524192 36524673 -126075257 - L1PA16 LINE L1 -6 6160 5689 21 0 0 0 chrX 36524994 36525015 -126074915 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 0 0 chrX 36525340 36525387 -126074543 + L2 LINE L2 3138 3184 -88 425 253 65 85 chrX 36526398 36526849 -126073081 - MLT1H LTR MaLR 0 595 114 256 273 20 50 chrX 36527096 36527195 -126072735 + MIR SINE MIR 83 178 -84 23 33 0 0 chrX 36528211 36528241 -126071689 + AT_rich Low_complexity Low_complexity 1 30 0 492 48 0 0 chrX 36528262 36528325 -126071605 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 332 293 75 10 chrX 36528579 36528707 -126071223 - MIR SINE MIR -45 163 25 380 333 97 0 chrX 36529395 36529560 -126070370 + MIR SINE MIR 46 226 -36 2681 98 25 3 chrX 36531893 36532260 -126067670 - THE1C LTR MaLR 0 375 1 3984 90 7 7 chrX 36532263 36532831 -126067099 - THE1C-int LTR MaLR -3 1577 1010 11358 196 13 4 chrX 36532839 36535986 -126063944 - L1P5 LINE L1 -382 6485 3309 * 40859 47 7 0 chrX 36535976 36542091 -126057839 - L1PA4 LINE L1 -1 6154 1 5448 168 58 19 chrX 36542095 36543544 -126056386 - L1P5 LINE L1 -3543 3319 1813 3618 222 204 8 chrX 36543528 36544852 -126055078 - L1P5 LINE L1 -5275 1588 6 * 2031 93 25 140 chrX 36544874 36545323 -126054607 - THE1C-int LTR MaLR -1183 397 1 2218 87 34 48 chrX 36545324 36545703 -126054227 - THE1C LTR MaLR -1 374 1 351 0 0 0 chrX 36546041 36546080 -126053850 + (CA)n Simple_repeat Simple_repeat 2 40 0 552 254 134 17 chrX 36547676 36547908 -126052022 + L1MC4a LINE L1 5574 5832 -1976 1404 280 72 18 chrX 36548551 36549008 -126050922 + LTR16C LTR ERVL 8 489 -2 316 111 16 32 chrX 36549106 36549169 -126050761 - LTR33A LTR ERVL -20 503 442 905 211 6 0 chrX 36549178 36549349 -126050581 - MLT1D LTR MaLR 0 505 334 2920 269 57 48 chrX 36549360 36550711 -126049219 - L1M4 LINE L1 -5179 1363 1 2376 297 46 57 chrX 36550995 36552292 -126047638 - ERVL LTR ERVL -385 5379 4097 1882 169 3 0 chrX 36552508 36552804 -126047126 + AluJb SINE Alu 1 297 -15 425 226 70 26 chrX 36552868 36552983 -126046947 - MIR SINE MIR -11 251 132 2338 132 34 50 chrX 36553193 36553631 -126046299 - Tigger2a DNA MER2_type 0 434 4 432 352 97 5 chrX 36553677 36553893 -126046037 + MIR SINE MIR 20 255 -7 712 98 0 0 chrX 36555114 36555216 -126044714 + FRAM SINE Alu 74 175 -1 1195 171 60 32 chrX 36556012 36556293 -126043637 - MLT1B LTR MaLR -101 289 1 358 226 0 43 chrX 36556305 36556398 -126043532 - MIR SINE MIR -55 207 119 2214 216 40 12 chrX 36557012 36557633 -126042297 - L1MD2 LINE L1 0 6242 5620 685 289 44 4 chrX 36557634 36558080 -126041850 - L1MDb LINE L1 -5860 549 7 255 322 84 42 chrX 36558755 36558898 -126041032 - MIR SINE MIR -94 168 20 222 400 35 9 chrX 36558904 36559019 -126040911 - L2 LINE L2 -19 3253 3136 362 292 10 10 chrX 36559597 36559693 -126040237 + MIR SINE MIR 38 133 -75 1176 216 100 43 chrX 36559705 36559910 -126040020 - MLT1D LTR MaLR -113 392 200 2431 80 3 0 chrX 36559910 36560209 -126039721 + AluSp SINE Alu 1 300 -13 1176 216 100 43 chrX 36560209 36560374 -126039556 - MLT1D LTR MaLR -305 200 1 703 273 115 18 chrX 36560374 36560652 -126039278 + MER69 DNA AcHobo 278 582 -1944 * 1399 198 136 9 chrX 36560637 36561087 -126038843 + MER69 DNA AcHobo 2010 2516 -10 2589 118 12 16 chrX 36562828 36563252 -126036678 - MER39 LTR ERV1 0 707 286 792 164 22 20 chrX 36563253 36563516 -126036414 - LTR32 LTR ERVL 0 471 152 277 195 115 23 chrX 36564225 36564312 -126035618 - MIR SINE MIR -19 243 149 987 243 67 80 chrX 36564555 36565081 -126034849 - LTR33 LTR ERVL 0 521 3 342 189 31 1 chrX 36565342 36565430 -126034500 - MLT1H LTR MaLR -11 531 453 583 262 73 31 chrX 36565506 36565774 -126034156 - MLT1H LTR MaLR -216 333 14 270 0 0 0 chrX 36566202 36566232 -126033698 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 291 28 0 0 chrX 36566231 36566267 -126033663 + (TA)n Simple_repeat Simple_repeat 1 36 0 194 250 0 91 chrX 36567284 36567372 -126032558 - L2 LINE L2 -5 3308 3229 * 214 331 45 11 chrX 36567353 36567469 -126032461 - MIR SINE MIR -71 137 10 299 256 42 3 chrX 36567510 36567622 -126032308 - MIR SINE MIR -63 145 37 279 93 0 0 chrX 36567948 36567991 -126031939 + (GA)n Simple_repeat Simple_repeat 1 43 0 284 254 109 45 chrX 36568648 36568758 -126031172 + MLT1J LTR MaLR 256 372 -139 207 0 0 0 chrX 36569358 36569381 -126030549 + (A)n Simple_repeat Simple_repeat 1 23 0 393 326 34 0 chrX 36569482 36569629 -126030301 - L3 LINE CR1 -10 1567 1416 308 186 114 0 chrX 36570082 36570152 -126029778 + L2 LINE L2 3236 3313 0 505 256 169 5 chrX 36570275 36570578 -126029352 - LTR33 LTR ERVL -12 509 110 1226 334 55 28 chrX 36570659 36571276 -126028654 - L3 LINE CR1 -344 1233 600 342 226 21 21 chrX 36571375 36571468 -126028462 + MER103 DNA DNA 1 93 -73 601 275 65 44 chrX 36571610 36571839 -126028091 + MIR SINE MIR 29 262 0 313 291 27 18 chrX 36572026 36572136 -126027794 + L1ME LINE L1 5276 5386 -760 545 303 6 12 chrX 36572252 36572414 -126027516 - MIR SINE MIR -1 261 101 313 235 15 0 chrX 36572428 36572496 -126027434 + L1ME LINE L1 5557 5625 -496 1306 277 73 15 chrX 36572512 36572923 -126027007 + LTR16A LTR ERVL 16 450 0 238 241 37 0 chrX 36572991 36573045 -126026885 + MLT1J2 LTR MaLR 254 309 -141 639 263 67 50 chrX 36573066 36573424 -126026506 + L1MCc LINE L1 21 384 -6039 1726 243 60 19 chrX 36573549 36574497 -126025433 + L1MCc LINE L1 814 1910 -4851 832 261 70 7 chrX 36574510 36574797 -126025133 - MLT1D LTR MaLR -2 503 199 1214 256 46 46 chrX 36574806 36575337 -126024593 + L1MCc LINE L1 2658 3188 -3753 2378 92 0 13 chrX 36575337 36575652 -126024278 + AluSq SINE Alu 1 311 -2 1214 256 46 46 chrX 36575652 36575725 -126024205 + L1MCc LINE L1 3188 3260 -3681 1996 172 42 3 chrX 36575725 36576080 -126023850 + MER93b LTR ERV1 5 373 0 1214 256 46 46 chrX 36576080 36576190 -126023740 + L1MCc LINE L1 3260 3336 -3605 541 250 73 0 chrX 36576363 36576527 -126023403 + L1MD3 LINE L1 7009 7184 -811 603 240 0 0 chrX 36576542 36576667 -126023263 + MLT1F1 LTR MaLR 1 125 -442 3076 173 39 2 chrX 36576668 36577229 -126022701 + L1MD3 LINE L1 7400 7981 -14 2072 93 23 33 chrX 36577231 36577531 -126022399 - AluY SINE Alu -14 297 1 315 250 42 10 chrX 36577569 36577665 -126022265 + MLT1J2 LTR MaLR 344 442 -8 27 49 0 0 chrX 36577847 36577888 -126022042 + AT_rich Low_complexity Low_complexity 1 41 0 255 259 9 103 chrX 36577991 36578107 -126021823 - MER102a DNA MER1_type -6 324 220 22 0 0 0 chrX 36578533 36578555 -126021375 + AT_rich Low_complexity Low_complexity 1 22 0 272 289 58 10 chrX 36578602 36578706 -126021224 - MIR SINE MIR -141 121 13 21 0 0 0 chrX 36578896 36578917 -126021013 + AT_rich Low_complexity Low_complexity 1 21 0 505 291 111 49 chrX 36578970 36579214 -126020716 - MIR SINE MIR -2 260 2 909 252 29 0 chrX 36580090 36580300 -126019630 + MIR SINE MIR 43 258 -4 1885 146 7 3 chrX 36580573 36580861 -126019069 + AluJb SINE Alu 1 289 -23 231 308 0 26 chrX 36580938 36581016 -126018914 - L2 LINE L2 -61 3252 3177 549 268 252 4 chrX 36581024 36581278 -126018652 + L2 LINE L2 2827 3143 -170 3624 259 40 14 chrX 36581305 36582274 -126017656 - L2 LINE L2 -508 2806 1813 1151 281 97 21 chrX 36582274 36582709 -126017221 - L2 LINE L2 -2846 468 1 787 167 0 8 chrX 36583069 36583195 -126016735 - FLAM_A SINE Alu -8 125 1 186 133 0 0 chrX 36583921 36583951 -126015979 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1334 235 55 48 chrX 36584242 36584676 -126015254 - MLT1J1 LTR MaLR -2 444 8 233 155 17 0 chrX 36586007 36586065 -126013865 + GA-rich Low_complexity Low_complexity 2 60 0 252 0 0 0 chrX 36587411 36587439 -126012491 + (T)n Simple_repeat Simple_repeat 1 28 0 1304 306 47 10 chrX 36588119 36588524 -126011406 + LTR16C LTR ERVL 71 490 -1 615 252 96 28 chrX 36588915 36589210 -126010720 + LTR33 LTR ERVL 173 521 0 372 277 6 77 chrX 36589210 36589388 -126010542 + MIR SINE MIR 25 189 -73 1205 176 0 0 chrX 36589803 36589991 -126009939 + MER5A DNA MER1_type 2 189 0 1312 228 42 9 chrX 36590163 36590601 -126009329 - MLT1E LTR MaLR 0 593 46 1319 227 50 34 chrX 36590763 36591198 -126008732 - MLT1-int LTR MaLR -766 605 37 402 355 35 12 chrX 36591716 36591888 -126008042 + MER5B DNA MER1_type 1 176 -2 320 152 15 0 chrX 36592090 36592156 -126007774 + CT-rich Low_complexity Low_complexity 3 69 0 1852 200 42 97 chrX 36592923 36593527 -126006403 - L1ME1 LINE L1 -7 6159 5592 4868 104 5 36 chrX 36593527 36594280 -126005650 + L1PB3 LINE L1 5420 6149 -5 1852 200 42 97 chrX 36594280 36594336 -126005594 - L1ME1 LINE L1 -574 5592 5535 346 273 34 0 chrX 36594339 36594427 -126005503 + L1MC4 LINE L1 6612 6702 -1340 293 0 27 0 chrX 36594447 36594484 -126005446 + (GA)n Simple_repeat Simple_repeat 2 39 0 1644 156 0 56 chrX 36594510 36594798 -126005132 - AluJo SINE Alu -40 272 1 393 193 31 76 chrX 36594800 36594961 -126004969 - L1ME1 LINE L1 -682 5484 5336 * 993 197 76 90 chrX 36594940 36595386 -126004544 - L1ME1 LINE L1 -2539 3607 3168 267 329 24 0 chrX 36595514 36595596 -126004334 + LTR16C LTR ERVL 408 491 0 240 318 111 40 chrX 36595723 36595849 -126004081 + L2 LINE L2 3138 3272 0 1255 172 152 0 chrX 36595966 36596244 -126003686 + AluJb SINE Alu 3 317 0 833 136 0 0 chrX 36596458 36596576 -126003354 + FLAM_C SINE Alu 1 118 -15 24 32 0 0 chrX 36596576 36596607 -126003323 + AT_rich Low_complexity Low_complexity 1 31 0 745 261 40 13 chrX 36596891 36597117 -126002813 + MIR SINE MIR 3 234 -28 1425 162 99 51 chrX 36597590 36597945 -126001985 - MLT1A1 LTR MaLR 0 396 1 231 114 0 0 chrX 36599484 36599519 -126000411 + (TG)n Simple_repeat Simple_repeat 2 36 0 411 310 37 21 chrX 36599521 36599708 -126000222 + MIR SINE MIR 11 200 -62 706 340 49 4 chrX 36599708 36599955 -125999975 - MIR SINE MIR -3 259 2 998 186 5 26 chrX 36600341 36600534 -125999396 - MER5A DNA MER1_type 0 189 1 715 214 77 6 chrX 36600544 36600712 -125999218 - MER58A DNA MER1_type -1 223 44 327 333 108 22 chrX 36600769 36601084 -125998846 - L2 LINE L2 -1175 2139 1798 1001 244 56 30 chrX 36601121 36601387 -125998543 + MLT1H1 LTR MaLR 1 273 -282 1033 135 36 26 chrX 36601388 36601580 -125998350 - THE1C LTR MaLR -2 373 180 864 293 95 8 chrX 36604305 36604674 -125995256 + MLT1I LTR MaLR 1 401 -8 385 312 89 49 chrX 36605096 36605624 -125994306 + L1ME4a LINE L1 4416 4961 -1185 336 294 68 25 chrX 36605887 36606050 -125993880 + L1ME4a LINE L1 5303 5472 -2336 392 206 6 120 chrX 36606180 36606355 -125993575 + L1ME4a LINE L1 5967 6121 0 431 326 87 26 chrX 36606844 36607460 -125992470 - L1ME2 LINE L1 -258 5975 5327 2029 247 138 25 chrX 36607854 36608376 -125991554 - MLT1G LTR MaLR 0 590 10 1816 248 48 13 chrX 36609092 36609633 -125990297 - L1ME2 LINE L1 -2332 3883 3324 6928 245 37 39 chrX 36609636 36610060 -125989870 - L1ME2 LINE L1 -2944 3271 2848 2812 10 0 0 chrX 36610060 36610366 -125989564 - AluYa5 SINE Alu -5 306 1 6928 245 37 39 chrX 36610366 36610673 -125989257 - L1ME2 LINE L1 -3367 2848 2542 2101 112 0 14 chrX 36610673 36610988 -125988942 + AluSx SINE Alu 1 311 0 6928 245 37 39 chrX 36610988 36612809 -125987121 - L1ME2 LINE L1 -3673 2542 768 2871 70 8 3 chrX 36612809 36613192 -125986738 - L1PA13 LINE L1 -11 6152 5768 6928 245 37 39 chrX 36613192 36613923 -125986007 - L1ME2 LINE L1 -5447 768 37 1657 184 93 37 chrX 36614358 36614733 -125985197 - MSTD LTR MaLR 0 396 1 22 88 0 0 chrX 36615769 36615826 -125984104 + AT_rich Low_complexity Low_complexity 1 57 0 647 292 74 20 chrX 36615916 36616306 -125983624 - L1ME4a LINE L1 -175 5946 5536 17585 44 1 0 chrX 36617232 36620170 -125979760 + L1PA5 LINE L1 3210 6150 -4 956 261 109 40 chrX 36620170 36620499 -125979431 + MLT1H LTR MaLR 91 442 -107 21 36 0 0 chrX 36621674 36621702 -125978228 + AT_rich Low_complexity Low_complexity 1 28 0 450 113 56 0 chrX 36621761 36621832 -125978098 - Charlie3 DNA MER1_type -9 2701 2627 734 291 205 25 chrX 36621934 36622329 -125977601 + L2 LINE L2 2848 3313 0 297 109 0 0 chrX 36622348 36622394 -125977536 + (TG)n Simple_repeat Simple_repeat 1 46 0 1580 155 15 4 chrX 36622542 36622806 -125977124 - AluJo SINE Alu -3 309 43 320 332 38 38 chrX 36624216 36624398 -125975532 - MIR SINE MIR -50 212 33 818 220 28 0 chrX 36624408 36624590 -125975340 + MER5A DNA MER1_type 1 187 -2 216 214 0 0 chrX 36624761 36624803 -125975127 + A-rich Low_complexity Low_complexity 1 42 0 2353 224 35 26 chrX 36625429 36626151 -125973779 + L1M4 LINE L1 3881 4608 -1538 210 302 0 0 chrX 36626202 36626265 -125973665 + MIR SINE MIR 200 262 0 1486 275 80 43 chrX 36626573 36627838 -125972092 + L1ME LINE L1 51 1333 -4747 14790 161 85 7 chrX 36627847 36631993 -125967937 + L1PBa LINE L1 1 4470 -2392 348 24 0 0 chrX 36631999 36632040 -125967890 + (CA)n Simple_repeat Simple_repeat 2 42 0 2686 92 0 5 chrX 36632040 36632405 -125967525 + L1PB1 LINE L1 5788 6150 -1 280 254 0 0 chrX 36632485 36632552 -125967378 + L1ME LINE L1 1386 1452 -4809 230 261 58 35 chrX 36632581 36632807 -125967123 - L1M4 LINE L1 -820 5326 5096 765 181 112 32 chrX 36632977 36633165 -125966765 + L1MD2 LINE L1 6146 6348 -11 314 286 68 15 chrX 36633191 36633324 -125966606 + MARNA DNA Mariner 370 509 -77 414 257 125 13 chrX 36633422 36633574 -125966356 - MIR SINE MIR -39 223 55 960 201 211 27 chrX 36634058 36634545 -125965385 - Charlie2 DNA MER1_type -4 2858 2282 4797 89 9 12 chrX 36634551 36635216 -125964714 - L1PA10 LINE L1 -116 6052 5390 1311 243 51 9 chrX 36635216 36635644 -125964286 - Charlie2 DNA MER1_type -564 2298 1853 698 233 54 66 chrX 36635632 36635890 -125964040 - Charlie2 DNA MER1_type -2452 330 76 * 723 290 0 11 chrX 36636008 36636191 -125963739 + MIR SINE MIR 41 221 -41 5034 206 31 11 chrX 36636701 36637713 -125962217 - MER45B DNA AcHobo -8 1032 1 503 285 29 0 chrX 36637989 36638126 -125961804 + LTR16A LTR ERVL 96 236 -214 470 146 19 39 chrX 36638159 36638262 -125961668 - MER53 DNA DNA -88 101 1 380 276 16 0 chrX 36638262 36638373 -125961557 + LTR16A LTR ERVL 242 354 -96 239 221 12 0 chrX 36638651 36638737 -125961193 + (TA)n Simple_repeat Simple_repeat 2 88 0 621 323 26 18 chrX 36638937 36639166 -125960764 + MIR SINE MIR 2 232 -30 28 29 0 0 chrX 36639166 36639201 -125960729 + AT_rich Low_complexity Low_complexity 1 35 0 209 293 4 21 chrX 36640061 36640141 -125959789 - MER5A DNA MER1_type -98 91 2 183 80 0 0 chrX 36640463 36640488 -125959442 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 235 357 0 0 chrX 36640490 36640546 -125959384 - L2 LINE L2 -12 3260 3205 528 287 89 25 chrX 36641149 36641351 -125958579 - MIR SINE MIR 0 262 48 395 270 66 66 chrX 36642410 36642547 -125957383 + L2 LINE L2 3136 3272 0 1402 298 95 4 chrX 36642774 36643248 -125956682 + MER69 DNA AcHobo 2 518 -708 * 1431 206 64 0 chrX 36643243 36643587 -125956343 + MER69 DNA AcHobo 2161 2526 0 2700 39 0 0 chrX 36643903 36644213 -125955717 - AluY SINE Alu -1 310 1 1478 272 79 10 chrX 36644652 36645133 -125954797 + LTR33 LTR ERVL 1 514 -7 411 254 65 53 chrX 36646028 36646197 -125953733 + HAL1 LINE L1 1014 1184 -1323 5927 175 26 2 chrX 36646256 36648292 -125951638 - L1PA16 LINE L1 -9 6157 4074 279 0 0 0 chrX 36648333 36648364 -125951566 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 43179 47 6 6 chrX 36648367 36654524 -125945406 - L1PA3 LINE L1 -3 6152 1 2958 218 51 19 chrX 36654521 36655272 -125944658 - L1PA16 LINE L1 -2058 4088 3314 * 243 358 24 41 chrX 36655653 36655776 -125944154 - L2 LINE L2 0 3272 3152 375 105 0 0 chrX 36656137 36656194 -125943736 + (TC)n Simple_repeat Simple_repeat 2 58 0 261 0 0 0 chrX 36656194 36656223 -125943707 + (CA)n Simple_repeat Simple_repeat 1 29 0 2053 215 40 7 chrX 36657548 36658143 -125941787 - L1MD2 LINE L1 -1 6358 5695 4760 209 114 30 chrX 36658153 36659466 -125940464 - L1MDa LINE L1 -4666 1874 117 2461 89 0 3 chrX 36659466 36659780 -125940150 - AluSq SINE Alu 0 313 1 4760 209 114 30 chrX 36659780 36659888 -125940042 - L1MDa LINE L1 -6423 117 19 192 77 0 0 chrX 36660568 36660594 -125939336 + (A)n Simple_repeat Simple_repeat 1 26 0 659 243 45 28 chrX 36660696 36660873 -125939057 - MER5A DNA MER1_type -1 188 9 264 111 0 0 chrX 36662717 36662762 -125937168 + (GA)n Simple_repeat Simple_repeat 1 45 0 2011 235 122 7 chrX 36663202 36663790 -125936140 + L1ME3 LINE L1 5507 6162 0 182 37 37 0 chrX 36664048 36664075 -125935855 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chrX 36664124 36664159 -125935771 + AT_rich Low_complexity Low_complexity 1 35 0 281 302 19 38 chrX 36665255 36665361 -125934569 - L2 LINE L2 -914 2400 2297 5168 215 54 27 chrX 36665404 36666663 -125933267 + L1M4 LINE L1 1 1293 -5249 306 258 0 0 chrX 36666765 36666831 -125933099 - MLT1-int LTR MaLR -635 736 671 * 7368 228 30 9 chrX 36666806 36668828 -125931102 + L1M4 LINE L1 2713 4776 -1868 2472 70 3 0 chrX 36869203 36869503 -125730427 + AluSp SINE Alu 1 301 -12 315 299 47 47 chrX 36869837 36870051 -125729879 - L2 LINE L2 -1 3312 3099 384 331 174 32 chrX 36870108 36870516 -125729414 - L2 LINE L2 -342 2972 2507 416 312 29 6 chrX 36870532 36870702 -125729228 - L2 LINE L2 -944 2370 2197 258 224 35 0 chrX 36870824 36870882 -125729048 + MIR SINE MIR 82 141 -121 1675 224 86 24 chrX 36870902 36871310 -125728620 - LTR33 LTR ERVL 0 521 77 3217 140 88 2 chrX 36871310 36871824 -125728106 + LTR64 LTR ERVK 1 558 0 1675 224 86 24 chrX 36871824 36871906 -125728024 - LTR33 LTR ERVL -444 77 1 257 320 13 0 chrX 36871912 36871987 -125727943 + MIR SINE MIR 177 252 -10 216 0 0 0 chrX 36872028 36872052 -125727878 + (TA)n Simple_repeat Simple_repeat 2 25 0 1019 315 26 22 chrX 36872074 36872528 -125727402 - L1ME LINE L1 -338 5783 5328 8019 27 2 0 chrX 36872671 36873653 -125726277 + L1PA4 LINE L1 5188 6171 0 2313 110 0 0 chrX 36873786 36874086 -125725844 - AluSx SINE Alu -12 300 1 330 306 90 90 chrX 36874091 36874558 -125725372 - L1ME LINE L1 -1120 5026 4560 363 283 35 112 chrX 36874612 36874898 -125725032 - HAL1b LINE L1 -985 363 100 1446 216 101 78 chrX 36875186 36875561 -125724369 + L1MC4a LINE L1 5518 5914 -1894 2372 81 3 0 chrX 36875561 36875857 -125724073 + AluSp SINE Alu 1 297 -16 1446 216 101 78 chrX 36875857 36876073 -125723857 + L1MC4a LINE L1 5914 6123 -1685 2288 255 72 43 chrX 36876573 36877033 -125722897 + L1MC4 LINE L1 6971 7416 -626 2481 71 3 0 chrX 36877033 36877330 -125722600 + AluSp SINE Alu 1 298 -15 2288 255 72 43 chrX 36877330 36877684 -125722246 + L1MC4 LINE L1 7416 7758 -284 1305 393 3 13 chrX 36877684 36877984 -125721946 - AluSx SINE Alu -15 297 1 2288 255 72 43 chrX 36877984 36878084 -125721846 + L1MC4 LINE L1 7758 7854 -188 2239 118 0 3 chrX 36878084 36878389 -125721541 + AluSp SINE Alu 1 304 -9 2288 255 72 43 chrX 36878389 36878499 -125721431 + L1MC4 LINE L1 7854 8027 -15 270 307 35 9 chrX 36878529 36878643 -125721287 + HAL1 LINE L1 1557 1673 -834 248 350 86 0 chrX 36878885 36879002 -125720928 - LTR16A LTR ERVL -323 127 1 1019 193 78 46 chrX 36879007 36879225 -125720705 + MER45B DNA AcHobo 1 225 -815 750 177 0 31 chrX 36879251 36879381 -125720549 - FLAM_A SINE Alu -7 126 1 405 182 0 0 chrX 36879392 36879458 -125720472 + MER45B DNA AcHobo 975 1040 0 923 216 131 5 chrX 36879734 36879956 -125719974 + MLT1J LTR MaLR 1 250 -261 393 185 65 0 chrX 36880027 36880119 -125719811 + MLT1J LTR MaLR 414 511 0 1301 256 82 54 chrX 36881546 36882049 -125717881 + LTR33 LTR ERVL 2 518 -3 2312 79 0 30 chrX 36882159 36882464 -125717466 + AluSx SINE Alu 1 296 -16 881 194 59 11 chrX 36883140 36883326 -125716604 + Charlie4 DNA MER1_type 1 195 -1766 * 2149 105 0 41 chrX 36883324 36883539 -125716391 + MER84 LTR ERVI 206 405 -102 2148 124 0 0 chrX 36883539 36883838 -125716092 + AluSx SINE Alu 5 303 -9 2149 105 0 41 chrX 36883838 36883937 -125715993 + MER84 LTR ERVI 405 507 0 16972 87 24 8 chrX 36883937 36886180 -125713750 + MER84-int LTR ERV1 1 2280 -2674 10562 106 26 8 chrX 36886176 36887654 -125712276 + MER84-int LTR ERV1 3451 4954 0 * 3859 107 4 4 chrX 36887654 36888161 -125711769 + MER84 LTR ERV1 1 507 0 2588 148 138 16 chrX 36888163 36888663 -125711267 - LTR48 LTR ERV1 -226 561 1 982 221 147 81 chrX 36888680 36889210 -125710720 + MER34B LTR ERV1 1 565 0 385 156 0 0 chrX 36889426 36889490 -125710440 + L1MC4a LINE L1 7626 7689 -119 2320 100 3 0 chrX 36890542 36890842 -125709088 - AluSq SINE Alu -12 301 1 3848 122 61 42 chrX 36890916 36891557 -125708373 + MER39B LTR ERV1 1 653 0 2179 92 55 0 chrX 36891753 36892045 -125707885 - AluSg SINE Alu -2 308 1 2638 218 10 58 chrX 36892063 36892544 -125707386 - L1ME1 LINE L1 -5 6161 5722 2267 107 3 0 chrX 36892544 36892843 -125707087 + AluSx SINE Alu 1 300 -12 2638 218 10 58 chrX 36892843 36893057 -125706873 - L1ME1 LINE L1 -444 5722 5499 549 297 97 35 chrX 36894313 36894777 -125705153 - L1ME4a LINE L1 -236 5885 5393 718 284 70 87 chrX 36895206 36895651 -125704279 - LTR16A LTR ERVL -13 437 1 811 220 104 33 chrX 36896958 36897199 -125702731 - L1ME3A LINE L1 -2 6168 5911 480 285 106 0 chrX 36897317 36897440 -125702490 - L2 LINE L2 -1 3271 3136 614 141 0 10 chrX 36897453 36897552 -125702378 + MER4A LTR ERV1 1 98 -566 1352 102 194 98 chrX 36897552 36897867 -125702063 + MER4A LTR ERV1 261 605 -59 201 340 0 0 chrX 36898031 36898134 -125701796 + (CCCCAG)n Simple_repeat Simple_repeat 4 106 0 516 269 65 32 chrX 36899569 36899755 -125700175 - MIR SINE MIR -7 255 64 321 26 0 0 chrX 36900013 36900051 -125699879 + (TG)n Simple_repeat Simple_repeat 1 38 0 351 199 0 37 chrX 36900060 36900221 -125699709 + (TA)n Simple_repeat Simple_repeat 2 156 0 216 67 0 0 chrX 36900905 36900935 -125698995 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 592 198 8 24 chrX 36901343 36901469 -125698461 + MER69 DNA AcHobo 2400 2523 -3 1559 131 67 29 chrX 36902444 36902867 -125697063 + LTR48-int LTR ERV1 150 686 -5912 189 0 0 0 chrX 36902948 36902969 -125696961 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1474 226 39 7 chrX 36903017 36903322 -125696608 + LTR48-int LTR ERV1 1854 2168 -4163 6032 106 72 23 chrX 36903383 36903719 -125696211 + LTR48-int LTR ERV1 198 516 -6242 2506 63 7 0 chrX 36903719 36904020 -125695910 + AluY SINE Alu 1 303 -8 6032 106 72 23 chrX 36904020 36904128 -125695802 + LTR48-int LTR ERV1 516 617 -6141 2512 112 77 26 chrX 36904128 36904556 -125695374 - LTR7 LTR ERV1 0 450 1 6032 106 72 23 chrX 36904556 36905026 -125694904 + LTR48-int LTR ERV1 617 1158 -5600 4564 86 53 9 chrX 36905048 36905749 -125694181 + LTR48-int LTR ERV1 1764 2495 -4103 1420 146 75 0 chrX 36905749 36905988 -125693942 - LTR8 LTR ERV1 -434 257 1 3975 127 119 39 chrX 36905988 36906211 -125693719 + LTR48-int LTR ERV1 2737 2941 -3657 2462 39 0 0 chrX 36906211 36906554 -125693376 - AluY SINE Alu 0 343 1 3975 127 119 39 chrX 36906554 36907203 -125692727 + LTR48-int LTR ERV1 2941 3681 -2917 * 7164 94 43 32 chrX 36907202 36908330 -125691600 + LTR48-int LTR ERV1 3837 4977 -1621 1736 90 35 4 chrX 36908308 36908563 -125691367 + LTR48-int LTR ERV1 4502 4764 -251 * 718 155 11 33 chrX 36908573 36908754 -125691176 + GA-rich Low_complexity Low_complexity 3 179 0 3241 188 85 3 chrX 36908756 36909417 -125690513 + LTR48 LTR ERV1 62 776 -11 1013 128 0 6 chrX 36909528 36909684 -125690246 + MER41B LTR ERV1 481 635 0 2565 47 0 0 chrX 36909760 36910056 -125689874 - AluY SINE Alu -15 296 1 419 327 165 26 chrX 36910489 36911070 -125688860 + L2 LINE L2 1710 2371 -943 3114 137 74 2 chrX 36911070 36911583 -125688347 + MER34B LTR ERV1 16 565 0 502 264 7 14 chrX 36911799 36911947 -125687983 + L2 LINE L2 3167 3313 0 17470 158 26 22 chrX 36912330 36914525 -125685405 + L1MA2 LINE L1 25 2238 -5327 2438 85 0 0 chrX 36914525 36914830 -125685100 + AluSg SINE Alu 1 305 -5 17470 158 26 22 chrX 36914830 36915591 -125684339 + L1MA2 LINE L1 2238 2994 -4571 3058 154 15 4 chrX 36915719 36916253 -125683677 + L1MA2 LINE L1 5313 5852 -1713 * 7256 96 5 29 chrX 36916250 36916351 -125683579 + L1MA2 LINE L1 6650 6752 -971 2165 126 10 0 chrX 36916351 36916661 -125683269 + AluSq SINE Alu 1 313 0 7256 96 5 29 chrX 36916661 36917657 -125682273 + L1MA2 LINE L1 6752 7723 0 200 125 0 25 chrX 36917660 36917700 -125682230 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 40 59 0 0 chrX 36918171 36918239 -125681691 + AT_rich Low_complexity Low_complexity 1 68 0 1713 214 32 21 chrX 36918805 36919183 -125680747 - MLT1E LTR MaLR -2 591 210 561 225 10 50 chrX 36919223 36919423 -125680507 - HAL1 LINE L1 -1349 1158 967 423 38 0 0 chrX 36919474 36919527 -125680403 + (TG)n Simple_repeat Simple_repeat 2 54 0 1026 233 127 1 chrX 36919528 36919964 -125679966 - MLT2F LTR ERVL -126 537 1 2278 91 0 10 chrX 36919977 36920275 -125679655 - AluY SINE Alu -15 296 2 4819 174 46 15 chrX 36920372 36920726 -125679204 + MER49 LTR ERV1 5 346 -577 2182 124 0 3 chrX 36920726 36921024 -125678906 - AluSx SINE Alu -15 297 1 4819 174 46 15 chrX 36921024 36921560 -125678370 + MER49 LTR ERV1 346 923 0 261 237 55 190 chrX 36921690 36921814 -125678116 + L2 LINE L2 7 76 -3238 4241 93 22 0 chrX 36921814 36922408 -125677522 + L1PA14 LINE L1 5542 6148 -13 261 237 55 190 chrX 36922408 36922557 -125677373 + L2 LINE L2 76 243 -3071 * 681 287 35 13 chrX 36922526 36922756 -125677174 + L2 LINE L2 3074 3308 -5 2203 117 0 0 chrX 36922977 36923275 -125676655 - AluSp SINE Alu -15 298 1 325 298 0 53 chrX 36923696 36923847 -125676083 + MLT1J2 LTR MaLR 1 143 -307 261 202 60 83 chrX 36923875 36924017 -125675913 + MLT1J2 LTR MaLR 225 422 -28 955 319 98 0 chrX 36924769 36925177 -125674753 + LTR16A LTR ERVL 1 448 -2 195 42 0 0 chrX 36926149 36926173 -125673757 + (GA)n Simple_repeat Simple_repeat 1 24 0 2016 219 118 10 chrX 36926569 36927077 -125672853 + MLT1F1 LTR MaLR 5 567 0 2421 85 0 0 chrX 36927286 36927593 -125672337 - AluSx SINE Alu -5 307 1 313 362 31 52 chrX 36928162 36928297 -125671633 + MIR SINE MIR 18 148 -64 2441 101 0 0 chrX 36928858 36929164 -125670766 - AluSx SINE Alu -6 306 1 373 236 102 47 chrX 36929217 36929344 -125670586 - MER5A DNA MER1_type 0 189 56 296 343 34 63 chrX 36929219 36929394 -125670536 + MER5A DNA MER1_type 17 186 -3 * 1058 310 109 25 chrX 36929497 36930258 -125669672 + L2 LINE L2 2429 3255 -58 966 176 10 5 chrX 36931324 36931528 -125668402 - L1MD3 LINE L1 -6 7989 7785 2259 100 3 0 chrX 36931592 36931881 -125668049 + AluSq SINE Alu 1 290 -23 363 23 0 0 chrX 36931911 36931955 -125667975 + (CA)n Simple_repeat Simple_repeat 1 44 0 2704 26 0 3 chrX 36932404 36932715 -125667215 - AluY SINE Alu -1 310 1 2223 91 0 0 chrX 36932797 36933105 -125666825 + AluSx SINE Alu 1 308 0 191 286 79 0 chrX 36933653 36933716 -125666214 - MIR SINE MIR -137 125 58 898 165 81 17 chrX 36934394 36934630 -125665300 + LTR65 LTR ERV1 3 253 -416 22 0 0 0 chrX 36934749 36934771 -125665159 + AT_rich Low_complexity Low_complexity 1 22 0 2138 8 0 0 chrX 36934772 36935024 -125664906 - L1HS LINE L1 0 6155 5904 * 5305 17 0 0 chrX 36935010 36935654 -125664276 + L1HS LINE L1 5263 5906 -249 1383 207 118 11 chrX 36935654 36936036 -125663894 + LTR65 LTR ERV1 245 667 -2 2343 94 0 3 chrX 36936225 36936523 -125663407 + AluSx SINE Alu 1 297 -15 3222 161 54 5 chrX 36938105 36938681 -125661249 + MER6A DNA MER2_type 1 604 -1 2399 165 115 6 chrX 36939144 36939683 -125660247 + L1MB7 LINE L1 5566 6163 -21 411 229 41 24 chrX 36939693 36939863 -125660067 - Charlie4 DNA MER1_type -528 1433 1261 2424 84 0 0 chrX 36940393 36940690 -125659240 + AluSx SINE Alu 1 297 -15 856 208 67 28 chrX 36940838 36941122 -125658808 - Charlie4 DNA MER1_type -1665 296 2 562 200 37 0 chrX 36941303 36941438 -125658492 - L1MD2 LINE L1 -22 6337 6198 441 225 0 0 chrX 36943204 36943284 -125656646 + FRAM/FAM SINE Alu 1 79 -97 2323 103 0 3 chrX 36943452 36943753 -125656177 + AluSx SINE Alu 2 301 -11 754 287 147 14 chrX 36944358 36944800 -125655130 + LTR33A LTR ERVL 23 523 0 1636 210 63 18 chrX 36945222 36945665 -125654265 + MLT1C LTR MaLR 1 463 -4 3024 230 100 15 chrX 36945710 36946891 -125653039 - L1M4 LINE L1 -2466 3680 2400 10263 25 0 2 chrX 36947458 36949439 -125650491 + L1PA4 LINE L1 4177 6155 0 2497 93 0 0 chrX 36950713 36951025 -125648905 + AluSx SINE Alu 1 312 0 1228 124 0 0 chrX 36951247 36951416 -125648514 - AluSg/x SINE Alu -10 302 134 2281 91 0 10 chrX 36951416 36951724 -125648206 - AluY SINE Alu -6 305 1 443 371 75 47 chrX 36952917 36953424 -125646506 + HAL1 LINE L1 108 628 -1879 457 130 98 0 chrX 36953652 36953744 -125646186 - L1MA7 LINE L1 0 6291 6191 250 282 64 39 chrX 36954088 36954166 -125645764 + L2 LINE L2 3170 3249 -23 3106 135 54 3 chrX 36954300 36954877 -125645053 - L1MA4 LINE L1 -28 6272 5667 253 152 106 0 chrX 36954854 36954920 -125645010 - L1MA7 LINE L1 -62 6229 6157 * 4183 145 27 24 chrX 36954924 36955911 -125644019 - L1MA7 LINE L1 -221 6070 5086 23 0 0 0 chrX 36955911 36955934 -125643996 + AT_rich Low_complexity Low_complexity 1 23 0 232 253 92 0 chrX 36957642 36957729 -125642201 + HAL1 LINE L1 2078 2172 -335 2371 92 0 0 chrX 36959461 36959764 -125640166 + AluSg SINE Alu 1 303 -7 473 302 154 0 chrX 36960045 36960194 -125639736 + MER5A DNA MER1_type 12 183 -6 1881 196 42 27 chrX 36960694 36961102 -125638828 - MLT2D LTR ERVL 0 414 1 1506 161 71 107 chrX 36961846 36962160 -125637770 - MSTD LTR MaLR 0 396 99 2227 106 0 3 chrX 36962160 36962452 -125637478 - AluSp SINE Alu -22 291 1 1506 161 71 107 chrX 36962452 36962548 -125637382 - MSTD LTR MaLR -297 99 1 1592 60 18 9 chrX 36962686 36962904 -125637026 + L1PA12 LINE L1 5949 6168 0 504 264 163 50 chrX 36963314 36963779 -125636151 - LTR33 LTR ERVL 0 521 4 204 40 0 0 chrX 36964448 36964473 -125635457 + (A)n Simple_repeat Simple_repeat 1 25 0 2383 123 15 15 chrX 36964608 36965008 -125634922 - L1MB4 LINE L1 0 6180 5781 22 0 0 0 chrX 36965201 36965223 -125634707 + AT_rich Low_complexity Low_complexity 1 22 0 586 290 56 72 chrX 36965251 36965842 -125634088 - L1ME3 LINE L1 -296 5866 5354 646 320 44 24 chrX 36966304 36966554 -125633376 - MIR SINE MIR -6 256 2 2010 157 0 25 chrX 36968131 36968450 -125631480 - AluJb SINE Alu -1 311 1 2678 164 70 19 chrX 36968658 36969184 -125630746 - LTR49 LTR ERV1 -42 553 1 822 301 154 3 chrX 36970027 36970326 -125629604 + MLT1I LTR MaLR 1 344 -65 463 323 47 43 chrX 36970421 36970700 -125629230 + LTR16B LTR ERVL 40 319 -145 435 275 7 40 chrX 36970742 36970891 -125629039 + LTR16B LTR ERVL 320 463 -1 845 321 56 14 chrX 36971977 36972332 -125627598 - LTR16B LTR ERVL 0 464 95 298 282 137 43 chrX 36972627 36972744 -125627186 + MIR SINE MIR 64 191 -71 304 205 102 84 chrX 36972973 36973139 -125626791 - MLT1K LTR MaLR -57 531 363 1982 117 59 0 chrX 36973513 36973786 -125626144 - AluSx SINE Alu -23 289 1 817 316 122 11 chrX 36973895 36974272 -125625658 - LTR16C LTR ERVL 0 491 73 2682 199 52 15 chrX 36974303 36974845 -125625085 - MLT1F1 LTR MaLR -5 562 1 351 0 0 0 chrX 36974980 36975019 -125624911 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 1332 6 0 33 chrX 36975020 36975203 -125624727 + (TTC)n Simple_repeat Simple_repeat 1 177 0 252 86 0 0 chrX 36975204 36975239 -125624691 + (TTCTCC)n Simple_repeat Simple_repeat 4 38 0 1809 151 26 35 chrX 36975239 36975550 -125624380 - AluSq SINE Alu -1 312 5 447 305 45 11 chrX 36976103 36976280 -125623650 - LTR16C LTR ERVL -32 459 277 8852 112 5 29 chrX 36976422 36977523 -125622407 + HSMAR2 DNA Mariner 9 1073 -229 1888 142 33 0 chrX 36977523 36977798 -125622132 + AluJb SINE Alu 7 290 -22 8852 112 5 29 chrX 36977798 36978023 -125621907 + HSMAR2 DNA Mariner 1073 1302 0 3829 110 54 17 chrX 36978683 36979257 -125620673 + LTR49 LTR ERV1 1 595 0 4097 146 27 17 chrX 36979485 36980189 -125619741 + MER50 LTR ERV1 1 711 -23 2155 144 101 93 chrX 36980363 36980919 -125619011 - LTR49 LTR ERV1 -33 562 3 2241 81 7 7 chrX 36981400 36981695 -125618235 - AluSq SINE Alu -18 295 1 1007 181 62 6 chrX 36981919 36982096 -125617834 + MER5A DNA MER1_type 3 189 0 369 203 13 0 chrX 36982419 36982498 -125617432 - MER5A DNA MER1_type -83 106 27 2992 116 51 28 chrX 36982519 36983178 -125616752 + LTR8A LTR ERV1 1 727 0 403 326 11 17 chrX 36983887 36984065 -125615865 + CT-rich Low_complexity Low_complexity 4 180 0 295 268 150 39 chrX 36985964 36986091 -125613839 + MIR SINE MIR 5 145 -117 326 118 132 29 chrX 36986098 36986166 -125613764 - MER34 LTR ERV1 0 542 468 845 173 70 193 chrX 36986220 36986553 -125613377 - MER34B LTR ERV1 -161 404 140 2357 39 0 21 chrX 36986553 36986835 -125613095 + AluY SINE Alu 2 277 -34 845 173 70 193 chrX 36986835 36986957 -125612973 - MER34B LTR ERV1 -425 140 5 2412 87 0 0 chrX 36987484 36987783 -125612147 + AluSg SINE Alu 1 299 -11 3126 168 22 13 chrX 36988764 36989318 -125610612 - MER89 LTR ERV1 0 559 1 1464 248 58 22 chrX 36989451 36989866 -125610064 + LTR16A LTR ERVL 21 450 0 344 146 0 18 chrX 36989877 36989932 -125609998 + LTR33 LTR ERVL 468 521 0 285 75 0 0 chrX 36990125 36990165 -125609765 + (CA)n Simple_repeat Simple_repeat 2 41 0 1100 231 4 21 chrX 36990609 36990847 -125609083 + MIR SINE MIR 5 238 -24 2297 120 3 0 chrX 36991104 36991412 -125608518 + AluSx SINE Alu 1 309 -3 490 257 60 9 chrX 36991447 36991678 -125608252 + L1ME LINE L1 5241 5482 -682 338 211 26 13 chrX 36992149 36992225 -125607705 + MLT1K LTR MaLR 512 588 0 385 334 77 67 chrX 36992348 36992737 -125607193 - L2 LINE L2 -339 2975 2583 706 274 5 39 chrX 36993489 36993693 -125606237 + LTR16A LTR ERVL 97 293 -157 2595 168 20 58 chrX 36993693 36994234 -125605696 - MLT1D LTR MaLR 0 505 3 784 211 19 6 chrX 36994235 36994396 -125605534 + LTR16A LTR ERVL 288 450 0 1406 226 7 10 chrX 36994690 36994986 -125604944 - LTR16A LTR ERVL 0 450 156 1436 204 35 45 chrX 36994987 36995385 -125604545 - L1ME LINE L1 -578 5588 5195 409 271 7 21 chrX 36996023 36996167 -125603763 - LTR16A1 LTR ERVL -4 453 312 944 259 47 22 chrX 36996365 36996634 -125603296 + LTR16A1 LTR ERVL 168 488 -3 780 180 0 0 chrX 36997263 36997391 -125602539 - MLT1B LTR MaLR 0 390 263 1766 207 67 64 chrX 36997393 36998094 -125601836 + MER49 LTR ERV1 1 901 -22 2300 96 3 3 chrX 36998094 36998397 -125601533 - AluSq SINE Alu -10 303 1 1766 207 67 64 chrX 36998397 36998421 -125601509 + MER49 LTR ERV1 901 923 0 1237 171 38 49 chrX 36998425 36998688 -125601242 - MLT1B LTR MaLR -130 260 1 2001 260 74 42 chrX 36998689 36999436 -125600494 + Charlie2b DNA MER1_type 60 830 -1952 1182 199 117 35 chrX 36999436 36999777 -125600153 + Charlie2a DNA MER1_type 1625 1993 -869 843 215 0 13 chrX 36999778 36999936 -125599994 + FRAM SINE Alu 1 155 -21 443 221 118 15 chrX 36999941 37000077 -125599853 + Charlie2a DNA MER1_type 1988 2137 -725 428 348 27 27 chrX 37002238 37002494 -125597436 + ERVL LTR ERVL 798 1053 -4711 377 194 75 32 chrX 37002666 37002745 -125597185 + Tigger5 DNA MER2_type 1 83 -2240 458 179 13 0 chrX 37002745 37002823 -125597107 - Tigger5 DNA MER2_type -3 2320 2242 340 115 0 19 chrX 37002813 37002865 -125597065 + Tigger5 DNA MER2_type 2242 2292 -31 * 1443 193 107 45 chrX 37002972 37003560 -125596370 - LTR48B LTR ERV1 -3 641 1 508 353 30 30 chrX 37003692 37003844 -125596086 + ERVL LTR ERVL 1302 1456 -3540 2506 103 132 8 chrX 37003844 37004224 -125595706 + MSTA LTR MaLR 1 427 -1 508 353 30 30 chrX 37004224 37004340 -125595590 + ERVL LTR ERVL 1455 1570 -3426 678 283 38 25 chrX 37004357 37004731 -125595199 - LTR16A LTR ERVL -14 436 5 1277 300 32 26 chrX 37004734 37005598 -125594332 + ERVL LTR ERVL 1680 2591 -3173 434 204 239 0 chrX 37005674 37005787 -125594143 - LTR16A LTR ERVL 0 450 311 456 35 0 0 chrX 37006262 37006320 -125593610 + (GA)n Simple_repeat Simple_repeat 1 58 0 350 234 64 11 chrX 37007527 37007621 -125592309 - L1ME LINE L1 -482 5639 5541 1372 243 106 58 chrX 37007809 37008286 -125591644 - L1MC4 LINE L1 -20 8022 7509 1068 193 18 55 chrX 37008286 37008504 -125591426 + MER63A DNA MER1_type 1 210 0 1372 243 106 58 chrX 37008504 37008628 -125591302 - L1MC4 LINE L1 -533 7509 7392 402 21 0 0 chrX 37008660 37008707 -125591223 + (TG)n Simple_repeat Simple_repeat 2 48 0 1085 289 69 6 chrX 37009130 37009490 -125590440 - LTR16C LTR ERVL 0 491 109 332 285 146 7 chrX 37010383 37010534 -125589396 - LTR16C LTR ERVL -26 465 294 2365 87 7 0 chrX 37011476 37011775 -125588155 - AluSg SINE Alu -9 301 1 186 318 32 0 chrX 37011791 37011854 -125588076 - L2 LINE L2 -2848 466 402 21 0 0 0 chrX 37012326 37012347 -125587583 + AT_rich Low_complexity Low_complexity 1 21 0 26 23 0 23 chrX 37012890 37012915 -125587015 + AT_rich Low_complexity Low_complexity 1 26 -17 1998 128 0 10 chrX 37012915 37013204 -125586726 + AluSc SINE Alu 1 286 -23 26 23 0 23 chrX 37013204 37013222 -125586708 + AT_rich Low_complexity Low_complexity 26 43 0 1020 156 0 17 chrX 37013753 37013926 -125586004 - FRAM SINE Alu -14 162 1 1104 312 86 30 chrX 37015073 37015564 -125584366 - LTR33 LTR ERVL 0 521 4 216 133 22 22 chrX 37015897 37015942 -125583988 + CT-rich Low_complexity Low_complexity 1 45 0 225 0 0 0 chrX 37016879 37016904 -125583026 + (TG)n Simple_repeat Simple_repeat 2 26 0 201 337 21 32 chrX 37017239 37017334 -125582596 - MER5A DNA MER1_type -6 183 90 1863 177 98 36 chrX 37017339 37017779 -125582151 - MLT1C LTR MaLR 0 467 1 375 338 75 39 chrX 37018137 37018445 -125581485 + LTR16C LTR ERVL 167 485 -6 235 234 0 0 chrX 37018445 37018492 -125581438 - MER5A DNA MER1_type -136 53 7 2040 151 0 16 chrX 37018659 37018976 -125580954 + AluJo SINE Alu 1 312 0 315 0 0 0 chrX 37019646 37019681 -125580249 + (TG)n Simple_repeat Simple_repeat 2 36 0 440 266 272 0 chrX 37019895 37020079 -125579851 + MIR SINE MIR 28 261 -1 319 208 132 9 chrX 37020298 37020404 -125579526 - HAL1 LINE L1 -1411 1096 978 1240 279 139 37 chrX 37020468 37021178 -125578752 - HAL1 LINE L1 -1639 868 86 387 0 0 0 chrX 37021664 37021707 -125578223 + (TG)n Simple_repeat Simple_repeat 2 44 0 207 191 0 0 chrX 37021993 37022040 -125577890 + A-rich Low_complexity Low_complexity 1 47 0 260 281 110 12 chrX 37022251 37022333 -125577597 + MIR3 SINE MIR 100 189 -19 495 295 126 6 chrX 37022900 37023083 -125576847 + MIR3 SINE MIR 1 205 -3 25 0 0 0 chrX 37023124 37023149 -125576781 + AT_rich Low_complexity Low_complexity 1 25 0 205 284 90 0 chrX 37023248 37023315 -125576615 - MIR SINE MIR -142 120 48 282 262 136 10 chrX 37023396 37023499 -125576431 + MIR SINE MIR 24 139 -69 2212 121 3 7 chrX 37024412 37024717 -125575213 + AluSx SINE Alu 1 304 -8 1235 196 100 102 chrX 37024809 37025279 -125574651 + MLT2B1 LTR ERVL 1 471 -49 631 0 25 0 chrX 37025279 37025358 -125574572 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 1235 196 100 102 chrX 37025358 37025408 -125574522 + MLT2B1 LTR ERVL 471 520 0 2619 158 9 2 chrX 37025471 37025915 -125574015 + MLT1C LTR MaLR 21 467 0 535 267 49 78 chrX 37026079 37026366 -125573564 + L1ME4a LINE L1 5687 5963 -158 2414 108 25 14 chrX 37026366 37026726 -125573204 - THE1B LTR MaLR 0 364 1 535 267 49 78 chrX 37026726 37026877 -125573053 + L1ME4a LINE L1 5963 6117 -4 2976 203 66 37 chrX 37027362 37027612 -125572318 - L1ME1 LINE L1 -5 6230 5989 363 126 0 158 chrX 37027612 37027707 -125572223 + MADE1 DNA Mariner 1 80 0 2976 203 66 37 chrX 37027707 37028565 -125571365 - L1ME1 LINE L1 -246 5989 5086 2182 242 75 35 chrX 37028562 37029268 -125570662 - L1ME1 LINE L1 -1828 4387 3632 * 1945 166 0 3 chrX 37029268 37029564 -125570366 + AluJo SINE Alu 1 295 -17 2182 242 75 35 chrX 37029564 37029800 -125570130 - L1ME1 LINE L1 -2583 3632 3407 2050 255 16 18 chrX 37029802 37030370 -125569560 + MLT1F1 LTR MaLR 1 567 0 271 277 29 15 chrX 37030371 37030508 -125569422 + MLT1F1-int LTR MaLR 2 140 -1231 523 160 11 0 chrX 37030509 37030603 -125569327 + MLT1F1 LTR MaLR 469 563 -4 21 0 0 0 chrX 37030606 37030627 -125569303 + AT_rich Low_complexity Low_complexity 1 21 0 17396 190 32 15 chrX 37030631 37032123 -125567807 - L1PA15 LINE L1 -9 6807 5341 2492 84 0 0 chrX 37032123 37032431 -125567499 + AluY SINE Alu 1 308 -3 17396 190 32 15 chrX 37032431 37033079 -125566851 - L1PA15 LINE L1 -1475 5341 4705 2383 97 7 3 chrX 37033079 37033389 -125566541 - AluSq SINE Alu 0 313 3 17396 190 32 15 chrX 37033389 37037865 -125562065 - L1PA15 LINE L1 -2111 4705 1 5109 223 102 71 chrX 37037889 37040088 -125559842 - L1ME1 LINE L1 -2804 3411 959 685 200 0 8 chrX 37040088 37040213 -125559717 - FLAM_C SINE Alu -19 124 1 5109 223 102 71 chrX 37040213 37041167 -125558763 - L1ME1 LINE L1 -5256 959 35 917 234 24 0 chrX 37042796 37043001 -125556929 + MIR SINE MIR 4 213 -49 379 347 40 0 chrX 37043452 37043625 -125556305 - MIR SINE MIR 0 262 83 445 236 9 45 chrX 37044174 37044284 -125555646 + MIR SINE MIR 2 107 -155 * 718 150 0 0 chrX 37044280 37044393 -125555537 - MIR SINE MIR -66 196 84 407 277 40 89 chrX 37044454 37044678 -125555252 - L1MC4 LINE L1 -1 8041 7829 719 202 62 70 chrX 37044721 37044993 -125554937 - L1ME2 LINE L1 -20 6144 5875 2328 81 37 0 chrX 37045124 37045242 -125554688 + AluSc SINE Alu 1 113 -196 207 0 0 0 chrX 37045242 37045265 -125554665 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2328 81 37 0 chrX 37045265 37045444 -125554486 + AluSc SINE Alu 113 309 0 337 158 24 0 chrX 37045532 37045614 -125554316 + (TA)n Simple_repeat Simple_repeat 2 85 0 261 224 151 83 chrX 37046820 37046924 -125553006 - MER5A DNA MER1_type -4 185 62 956 120 6 12 chrX 37046924 37047091 -125552839 - L1MA4A LINE L1 -2 6301 6136 261 224 151 83 chrX 37047091 37047155 -125552775 - MER5A DNA MER1_type -127 62 4 226 168 126 59 chrX 37047664 37047783 -125552147 - L1MC4 LINE L1 -821 7221 7095 2520 66 3 0 chrX 37047897 37048199 -125551731 - AluSp SINE Alu -10 303 1 1008 271 94 36 chrX 37048214 37049144 -125550786 - L1MC4 LINE L1 -891 7002 5916 456 295 8 8 chrX 37049286 37049415 -125550515 + L2 LINE L2 3184 3312 -1 422 276 17 77 chrX 37049607 37049788 -125550142 + MER5A DNA MER1_type 2 171 -18 227 306 14 14 chrX 37049795 37049867 -125550063 + L3 LINE CR1 1399 1470 -107 206 200 55 18 chrX 37049936 37049991 -125549939 + L2 LINE L2 3216 3272 0 2520 76 10 90 chrX 37051022 37051432 -125548498 + MER51B LTR ERV1 1 377 0 1066 238 77 24 chrX 37051432 37051768 -125548162 + MLT1C LTR MaLR 66 419 -48 501 305 138 19 chrX 37051821 37051963 -125547967 - L1M4 LINE L1 -1569 4577 4453 1609 173 0 76 chrX 37051963 37052293 -125547637 - AluJo SINE Alu -7 305 1 501 305 138 19 chrX 37052293 37053111 -125546819 - L1M4 LINE L1 -1693 4453 3502 2540 138 50 5 chrX 37053287 37053728 -125546202 - MER65C LTR ERV1 0 461 1 248 283 85 28 chrX 37054133 37054239 -125545691 + MLT1I LTR MaLR 98 209 -200 1059 141 89 42 chrX 37054305 37054518 -125545412 - MER58A DNA MER1_type 0 224 2 198 373 75 22 chrX 37054642 37054776 -125545154 - MIR SINE MIR -102 160 20 199 265 44 73 chrX 37054815 37054883 -125545047 - MIR SINE MIR -76 132 67 234 273 80 0 chrX 37055228 37055316 -125544614 + MLT1C LTR MaLR 439 533 -22 4062 183 78 57 chrX 37055429 37056428 -125543502 + LTR28 LTR ERV1 1 1020 0 1758 190 23 0 chrX 37059153 37059458 -125540472 + AluJo SINE Alu 1 312 0 1973 133 39 0 chrX 37059498 37059777 -125540153 + AluSx SINE Alu 1 290 -22 232 194 14 56 chrX 37060691 37060763 -125539167 + L1ME4a LINE L1 5959 6027 -94 821 278 44 7 chrX 37060785 37061058 -125538872 + LTR16C LTR ERVL 1 283 -208 508 260 158 15 chrX 37061058 37061254 -125538676 - MER58A DNA MER1_type 0 224 1 * 584 282 47 33 chrX 37061254 37061465 -125538465 + LTR16C LTR ERVL 276 489 -2 2439 72 3 34 chrX 37062020 37062341 -125537589 - AluSp SINE Alu -2 311 1 501 228 25 56 chrX 37062400 37062597 -125537333 + L1ME3A LINE L1 5965 6155 -15 582 277 38 107 chrX 37062637 37063197 -125536733 - MER34 LTR ERV1 0 542 22 1396 73 5 55 chrX 37063768 37063916 -125536014 - L1MA2 LINE L1 -9 6295 6160 2073 107 45 3 chrX 37063916 37064206 -125535724 - AluSx SINE Alu -10 302 1 1396 73 5 55 chrX 37064206 37064277 -125535653 - L1MA2 LINE L1 -144 6160 6087 310 275 36 28 chrX 37064831 37065035 -125534895 - HERV3 LTR ERV1 -2935 5112 4451 1160 98 6 0 chrX 37067033 37067206 -125532724 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 2422 205 85 74 chrX 37068508 37069463 -125530467 - HERV3 LTR ERV1 -5185 1146 321 701 267 29 125 chrX 37069806 37070390 -125529540 - MER34 LTR ERV1 -1 541 14 276 376 16 11 chrX 37070612 37070801 -125529129 + LTR16B LTR ERVL 125 314 -150 277 172 0 0 chrX 37070827 37070885 -125529045 + LTR1B LTR ERV1 1 58 -768 324 216 12 81 chrX 37070891 37071057 -125528873 + LTR1B LTR ERV1 675 1020 0 1030 167 69 0 chrX 37071243 37071358 -125528572 + AluJo SINE Alu 1 133 -179 567 43 0 0 chrX 37071358 37071428 -125528502 + (CA)n Simple_repeat Simple_repeat 2 71 0 1030 167 69 0 chrX 37071428 37071486 -125528444 + AluJo SINE Alu 133 186 -126 2609 112 27 66 chrX 37071486 37072036 -125527894 - LTR10A LTR ERV1 -17 616 47 670 190 126 44 chrX 37072056 37072368 -125527562 + MER31B LTR ERV1 8 466 0 1767 120 7 11 chrX 37072640 37072915 -125527015 + LTR10A LTR ERV1 204 477 -132 21 0 0 0 chrX 37073080 37073101 -125526829 + AT_rich Low_complexity Low_complexity 1 21 0 637 284 52 52 chrX 37073828 37074156 -125525774 + Charlie2 DNA MER1_type 14 341 -2521 1993 193 42 14 chrX 37074157 37074747 -125525183 + Charlie2 DNA MER1_type 2221 2827 -35 237 239 15 0 chrX 37074748 37074815 -125525115 - L1MD3 LINE L1 -20 7975 7908 2348 173 32 19 chrX 37074858 37075332 -125524598 + MER89 LTR ERV1 71 550 -9 4145 214 54 32 chrX 37075342 37075683 -125524247 - L1MC3 LINE L1 -793 6992 6660 207 88 0 0 chrX 37075683 37075717 -125524213 + (CA)n Simple_repeat Simple_repeat 2 35 0 4145 214 54 32 chrX 37075717 37076651 -125523279 - L1MC3 LINE L1 -1125 6660 5689 297 0 0 0 chrX 37076658 37076691 -125523239 + (TCTA)n Simple_repeat Simple_repeat 3 35 0 307 254 87 48 chrX 37076695 37076821 -125523109 - MLT2C1 LTR ERVL -55 342 212 231 189 27 14 chrX 37076821 37076895 -125523035 + CT-rich Low_complexity Low_complexity 1 75 0 469 261 79 6 chrX 37076904 37077069 -125522861 - MLT2C1 LTR ERVL -203 194 18 1163 142 32 28 chrX 37077074 37077292 -125522638 - THE1C LTR MaLR -156 219 1 2068 262 22 18 chrX 37077295 37078028 -125521902 - L1M4 LINE L1 -1774 4372 3637 279 258 0 32 chrX 37078056 37078149 -125521781 + Charlie2 DNA MER1_type 2773 2862 0 489 352 12 47 chrX 37078383 37078704 -125521226 + LTR16A1 LTR ERVL 148 457 0 335 345 106 29 chrX 37078879 37079125 -125520805 + L2 LINE L2 3008 3272 0 3830 191 53 16 chrX 37079310 37080310 -125519620 + L1PA12 LINE L1 2 1317 -6264 2401 94 3 0 chrX 37080331 37080638 -125519292 - AluSp SINE Alu -5 308 1 849 226 35 9 chrX 37080653 37080883 -125519047 - L1MC4 LINE L1 -1040 7002 6767 1190 87 7 0 chrX 37080883 37081033 -125518897 - AluSp SINE Alu -162 151 1 2985 234 11 15 chrX 37081033 37081687 -125518243 + L1PA12 LINE L1 1035 1685 -5896 * 3534 171 9 6 chrX 37081684 37082397 -125517533 + L1PA12 LINE L1 2433 3151 -4433 5030 218 21 3 chrX 37082403 37083629 -125516301 + L1PA12 LINE L1 3452 4702 -2882 2326 29 0 11 chrX 37083629 37083907 -125516023 + L1PA3 LINE L1 5878 6155 0 598 231 24 0 chrX 37084270 37084439 -125515491 + L1PA12 LINE L1 4690 4862 -2722 403 91 45 0 chrX 37084442 37084508 -125515422 + MSTB LTR MaLR 358 426 0 306 277 11 36 chrX 37085356 37085492 -125514438 - MIR SINE MIR -59 203 73 261 0 0 0 chrX 37085719 37085748 -125514182 + (A)n Simple_repeat Simple_repeat 1 29 0 4099 61 0 32 chrX 37085981 37086370 -125513560 - L1PA7 LINE L1 0 6154 5787 2507 77 0 0 chrX 37086370 37086681 -125513249 - AluY SINE Alu 0 311 1 4099 61 0 32 chrX 37086681 37086852 -125513078 - L1PA7 LINE L1 -367 5787 5612 273 335 89 25 chrX 37086933 37087091 -125512839 + MER91A DNA MER1_type 4 171 -25 5484 151 10 19 chrX 37089614 37090626 -125509304 - L1MA10 LINE L1 0 6334 5332 1410 146 232 6 chrX 37090626 37090949 -125508981 + MSTD LTR MaLR 1 396 0 2654 188 4 2 chrX 37090951 37091498 -125508432 - L1MA10 LINE L1 -812 5334 4787 * 5133 179 36 33 chrX 37091495 37092663 -125507267 + L1MC3 LINE L1 6614 7784 -1 1574 211 22 14 chrX 37092681 37093036 -125506894 + L1MD2 LINE L1 26 383 -6157 1052 209 38 14 chrX 37093046 37093333 -125506597 + L1MD2 LINE L1 4156 4449 -2091 * 1080 219 184 16 chrX 37093318 37093692 -125506238 + L1MD2 LINE L1 5874 6310 -49 654 113 0 0 chrX 37093697 37093794 -125506136 + AluSg/x SINE Alu 211 307 -3 2281 232 17 69 chrX 37093850 37094748 -125505182 + L1MD2 LINE L1 4448 5298 -1242 332 100 0 0 chrX 37094749 37094799 -125505131 - L1P LINE L1 -1412 4734 4685 * 3332 167 24 6 chrX 37094797 37095457 -125504473 + L1P LINE L1 4710 5381 -765 2063 189 65 0 chrX 37095455 37095916 -125504014 + L1MD2 LINE L1 6037 6527 -226 * 393 282 80 11 chrX 37095932 37096120 -125503810 - MER69 DNA AcHobo -2086 440 240 281 292 52 10 chrX 37096333 37096429 -125503501 - MER5A DNA MER1_type 0 189 90 220 296 93 9 chrX 37097326 37097434 -125502496 - MIR SINE MIR 0 262 146 244 244 70 70 chrX 37097438 37097594 -125502336 - LTR16C LTR ERVL -10 481 326 468 288 42 24 chrX 37097974 37098186 -125501744 - LTR16B LTR ERVL -13 451 236 260 298 58 19 chrX 37098711 37098815 -125501115 + LTR67 LTR ERVL 408 515 -42 182 65 65 0 chrX 37098872 37098903 -125501027 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 365 186 0 14 chrX 37098914 37098984 -125500946 - AluY SINE Alu -108 193 125 256 271 0 0 chrX 37099249 37099319 -125500611 - MER63 DNA MER1_type 0 1061 992 1492 270 87 15 chrX 37099601 37100131 -125499799 - MLT1G LTR MaLR -12 578 11 2533 54 0 22 chrX 37100299 37100616 -125499314 - AluY SINE Alu -1 310 1 426 343 113 59 chrX 37100896 37102029 -125497901 - L2 LINE L2 -44 3228 2035 250 270 30 0 chrX 37102537 37102637 -125497293 - L1ME LINE L1 -299 5822 5720 982 220 15 104 chrX 37102840 37103121 -125496809 - Charlie7 DNA MER1_type -1952 660 424 282 116 0 0 chrX 37103121 37103164 -125496766 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 982 220 15 104 chrX 37103164 37103287 -125496643 - Charlie7 DNA MER1_type -2188 424 292 249 250 53 66 chrX 37103364 37103442 -125496488 - Charlie7 DNA MER1_type -2462 150 73 2555 113 14 3 chrX 37103442 37103813 -125496117 + THE1C LTR MaLR 1 375 0 249 250 53 66 chrX 37103813 37103886 -125496044 - Charlie7 DNA MER1_type -2539 73 1 386 220 40 40 chrX 37104335 37104435 -125495495 - MIR SINE MIR 0 262 163 561 317 0 15 chrX 37104446 37104645 -125495285 - HERVL LTR ERVL -2453 3201 3006 2399 192 33 48 chrX 37104903 37105533 -125494397 + L1MC4a LINE L1 7187 7807 -1 344 291 201 8 chrX 37105574 37105708 -125494222 + MIR3 SINE MIR 49 208 0 213 360 59 73 chrX 37105724 37106010 -125493920 - L2 LINE L2 0 3272 2991 2526 230 22 19 chrX 37106308 37106981 -125492949 - L1ME3A LINE L1 -8 6162 5488 8186 105 9 33 chrX 37107035 37107637 -125492293 + HSMAR2 DNA Mariner 6 621 -681 1469 167 48 87 chrX 37107637 37107948 -125491982 - AluJb SINE Alu -13 299 1 8186 105 9 33 chrX 37107948 37108674 -125491256 + HSMAR2 DNA Mariner 621 1302 0 266 185 19 25 chrX 37108678 37108771 -125491159 - L1ME3A LINE L1 -775 5393 5298 1568 204 49 33 chrX 37108801 37109169 -125490761 - MLT1A2 LTR MaLR 0 374 1 1815 153 24 10 chrX 37109298 37109593 -125490337 - AluJo SINE Alu -13 299 1 346 222 94 17 chrX 37109703 37109820 -125490110 - MIR SINE MIR -52 210 85 316 312 87 12 chrX 37110131 37110304 -125489626 + L1MC3 LINE L1 19 204 -6222 1387 184 37 105 chrX 37110316 37110717 -125489213 - MLT1A2 LTR MaLR 0 374 1 7635 228 39 77 chrX 37110717 37114268 -125485662 + L1MC3 LINE L1 2405 6090 -336 1615 193 20 10 chrX 37114268 37114564 -125485366 + AluJb SINE Alu 1 299 -13 7635 228 39 77 chrX 37114564 37114697 -125485233 + L1MC3 LINE L1 6090 5259 -1167 900 169 0 50 chrX 37114697 37114892 -125485038 + FRAM SINE Alu 1 40 0 7635 228 39 77 chrX 37114892 37115303 -125484627 + L1MC3 LINE L1 5258 5683 -743 6238 165 74 66 chrX 37117009 37117879 -125482051 + L1MC3 LINE L1 6483 7456 -609 252 256 12 23 chrX 37117879 37117965 -125481965 + MLT1F1 LTR MaLR 24 108 -459 6238 165 74 66 chrX 37117965 37118580 -125481350 + L1MC3 LINE L1 7456 8065 0 1667 251 124 26 chrX 37119044 37119097 -125480833 + L2 LINE L2 2257 2303 -1010 1059 286 102 15 chrX 37119097 37119576 -125480354 + LTR33 LTR ERVL 1 521 0 1667 251 124 26 chrX 37119576 37120479 -125479451 + L2 LINE L2 2303 3313 0 286 283 0 0 chrX 37121944 37122036 -125477894 + L1MC4 LINE L1 7934 8025 -17 3622 117 0 4 chrX 37122489 37123002 -125476928 - MER9 LTR ERVK 0 511 1 184 200 18 55 chrX 37123291 37123346 -125476584 - L2 LINE L2 -8 3305 3253 2873 203 24 38 chrX 37123391 37124322 -125475608 - L1M1 LINE L1 -6296 1269 12 809 193 72 5 chrX 37124328 37124535 -125475395 - L1M4 LINE L1 -1393 4753 4533 26 0 0 0 chrX 37124535 37124561 -125475369 + AT_rich Low_complexity Low_complexity 1 26 0 268 225 144 6 chrX 37124571 37124731 -125475199 + Charlie2 DNA MER1_type 2241 2422 -440 1935 187 42 47 chrX 37124733 37125156 -125474774 - L1M4 LINE L1 -1601 4545 4124 2343 86 10 10 chrX 37125156 37125469 -125474461 + AluSp SINE Alu 1 313 0 1935 187 42 47 chrX 37125469 37125596 -125474334 - L1M4 LINE L1 -2022 4124 3998 433 223 42 42 chrX 37125685 37125878 -125474052 - L1MEc LINE L1 -3584 3060 2868 612 279 132 42 chrX 37125893 37127368 -125472562 - L1MEc LINE L1 -4001 2824 1218 1834 137 102 38 chrX 37127597 37127939 -125471991 + THE1B LTR MaLR 1 364 0 12138 84 3 2 chrX 37127939 37129518 -125470412 + THE1B-int LTR MaLR 1 1580 0 2183 125 73 14 chrX 37129518 37129862 -125470068 + THE1B LTR MaLR 1 364 0 3086 174 100 23 chrX 37131718 37132449 -125467481 - LTR48 LTR ERV1 0 787 1 897 86 0 26 chrX 37134780 37134931 -125464999 + MER4A LTR ERV1 1 147 -517 1817 123 14 21 chrX 37134957 37135314 -125464616 + MER4A LTR ERV1 252 664 0 633 230 46 65 chrX 37135314 37135531 -125464399 + MLT1F1 LTR MaLR 45 257 -285 1256 103 41 0 chrX 37135532 37135726 -125464204 - MSTA LTR MaLR 0 428 227 2339 188 140 25 chrX 37135732 37136382 -125463548 + MER50 LTR ERV1 10 734 0 1225 157 31 0 chrX 37136382 37136605 -125463325 - MSTA LTR MaLR -198 230 1 1017 203 228 0 chrX 37136605 37136851 -125463079 + MLT1F1 LTR MaLR 266 567 0 1871 189 46 66 chrX 37137169 37137729 -125462201 + MER34B LTR ERV1 17 565 0 256 219 62 0 chrX 37138111 37138175 -125461755 - L2 LINE L2 -1 3312 3245 1456 203 45 97 chrX 37138187 37138763 -125461167 - MER34C LTR ERV1 -3 582 37 514 319 82 65 chrX 37138763 37139130 -125460800 - L2 LINE L2 -73 3199 2827 2078 142 23 3 chrX 37139231 37139583 -125460347 - MLT1A1 LTR MaLR -6 359 1 1019 255 76 83 chrX 37139818 37140145 -125459785 - L1MEc LINE L1 -5837 705 377 2293 113 0 0 chrX 37140145 37140446 -125459484 - AluSx SINE Alu -11 301 1 1019 255 76 83 chrX 37140446 37140813 -125459117 - L1MEc LINE L1 -6165 377 16 4164 92 2 3 chrX 37140852 37141223 -125458707 - L1PB1 LINE L1 -4 6147 5776 336 102 0 0 chrX 37141223 37141272 -125458658 + (CA)n Simple_repeat Simple_repeat 2 50 0 4164 92 2 3 chrX 37141272 37141485 -125458445 - L1PB1 LINE L1 -375 5776 5564 6429 84 39 8 chrX 37141506 37142563 -125457367 - L1PBa LINE L1 -4115 2748 1660 4986 153 64 29 chrX 37142560 37143795 -125456135 - L1PBa LINE L1 -5438 1425 3 * 189 107 0 0 chrX 37144000 37144028 -125455902 + (TA)n Simple_repeat Simple_repeat 2 29 0 26 30 0 0 chrX 37144177 37144210 -125455720 + AT_rich Low_complexity Low_complexity 1 33 0 1360 109 28 0 chrX 37144425 37144636 -125455294 + L1PA13 LINE L1 5942 6158 -5 246 128 0 0 chrX 37144888 37144927 -125455003 + (TCCCC)n Simple_repeat Simple_repeat 2 40 0 1578 183 33 7 chrX 37144940 37145213 -125454717 - AluJo SINE Alu -32 280 1 2251 92 3 41 chrX 37145267 37145583 -125454347 - AluSc SINE Alu -5 304 1 264 289 113 0 chrX 37145932 37146029 -125453901 + MIR SINE MIR 52 159 -103 347 347 31 0 chrX 37146155 37146253 -125453677 + MER91A DNA MER1_type 95 195 -1 568 309 105 25 chrX 37146732 37147056 -125452874 + LTR16A LTR ERVL 96 445 -5 2249 90 0 0 chrX 37147090 37147401 -125452529 + AluSc SINE Alu 1 311 0 458 259 29 35 chrX 37147425 37147599 -125452331 + MLT1J LTR MaLR 8 180 -331 378 269 48 14 chrX 37147982 37148127 -125451803 + MIR SINE MIR 86 235 -27 1274 298 17 5 chrX 37148370 37148786 -125451144 - LTR16A LTR ERVL -2 448 28 209 122 49 0 chrX 37149604 37149645 -125450285 + (TATG)n Simple_repeat Simple_repeat 3 45 0 207 368 103 17 chrX 37149650 37149767 -125450163 - MIR3 SINE MIR -67 141 15 534 238 11 43 chrX 37150060 37150245 -125449685 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 577 253 100 0 chrX 37150617 37150767 -125449163 + MER58C DNA MER1_type 1 165 -50 1493 251 17 47 chrX 37150864 37151330 -125448600 - LTR16A1 LTR ERVL -2 455 4 499 159 63 32 chrX 37151874 37152000 -125447930 - L1MC3 LINE L1 0 7785 7656 2436 188 33 9 chrX 37152004 37152553 -125447377 - L1MC3 LINE L1 -1167 6618 6057 389 208 21 10 chrX 37152554 37152650 -125447280 + L1MC2 LINE L1 5928 6024 -320 3323 249 44 36 chrX 37152684 37154090 -125445840 - L1MCb LINE L1 -2537 4027 2634 2119 134 16 3 chrX 37154090 37154396 -125445534 - AluSx SINE Alu -2 310 1 3323 249 44 36 chrX 37154396 37156782 -125443148 - L1MCb LINE L1 -3930 2634 61 2414 75 0 3 chrX 37156782 37157075 -125442855 - AluSg SINE Alu -18 292 1 3323 249 44 36 chrX 37157075 37157137 -125442793 - L1MCb LINE L1 -6503 61 1 231 277 108 78 chrX 37157696 37157794 -125442136 - MLT1L LTR MaLR -80 535 429 2386 87 0 16 chrX 37157794 37158104 -125441826 + AluSx SINE Alu 1 305 -7 231 277 108 78 chrX 37158104 37158171 -125441759 - MLT1L LTR MaLR -186 429 365 430 345 15 13 chrX 37158613 37158955 -125440975 - LTR16B LTR ERVL 0 464 51 896 307 70 34 chrX 37159150 37159651 -125440279 + LTR33 LTR ERVL 3 521 0 386 323 93 71 chrX 37159809 37160119 -125439811 - L2 LINE L2 0 3272 2956 247 350 76 59 chrX 37160190 37160427 -125439503 - L2 LINE L2 -520 2794 2554 25 0 0 0 chrX 37161288 37161313 -125438617 + AT_rich Low_complexity Low_complexity 1 25 0 428 289 58 35 chrX 37161323 37161669 -125438261 + L1ME LINE L1 5378 5731 -390 183 80 0 0 chrX 37161768 37161793 -125438137 + (TA)n Simple_repeat Simple_repeat 1 25 0 236 268 14 14 chrX 37162021 37162092 -125437838 - LTR33 LTR ERVL -306 215 145 830 290 105 29 chrX 37162425 37163176 -125436754 - ERVL LTR ERVL -387 5377 4511 387 0 0 0 chrX 37163176 37163219 -125436711 + (TA)n Simple_repeat Simple_repeat 2 44 0 830 290 105 29 chrX 37163219 37163288 -125436642 - ERVL LTR ERVL -1253 4511 4449 298 319 17 0 chrX 37163329 37163445 -125436485 - ERVL LTR ERVL -756 5008 4891 6435 158 34 33 chrX 37163581 37164964 -125434966 - L1MC3 LINE L1 0 7785 6402 1318 193 81 62 chrX 37164964 37165322 -125434608 + MLT1A1 LTR MaLR 1 365 0 7489 211 36 38 chrX 37165366 37167082 -125432848 + MLT1A1-int LTR MaLR 23 1735 0 1527 188 73 48 chrX 37167082 37167438 -125432492 + MLT1A1 LTR MaLR 1 365 0 1972 191 68 11 chrX 37167442 37167914 -125432016 - L1MC3 LINE L1 -1383 6402 5904 1891 244 42 36 chrX 37167916 37168445 -125431485 + MLT2B3 LTR ERVL 3 534 -20 198 103 0 0 chrX 37168445 37168474 -125431456 + (TCTCCC)n Simple_repeat Simple_repeat 5 33 0 246 111 0 0 chrX 37168490 37168526 -125431404 + MLT2C2 LTR ERVL 429 464 0 7827 196 30 13 chrX 37168526 37169741 -125430189 + ERVL-C2 LTR ERVL 1 1193 -4571 2158 106 0 20 chrX 37169741 37170034 -125429896 + AluSp SINE Alu 1 287 -26 387 0 0 0 chrX 37170034 37170077 -125429853 + (CA)n Simple_repeat Simple_repeat 2 44 0 7827 196 30 13 chrX 37170077 37170418 -125429512 + ERVL-C2 LTR ERVL 1192 1585 -4179 1497 263 40 23 chrX 37170418 37170512 -125429418 - L2 LINE L2 -1009 2305 2214 1919 188 121 38 chrX 37170512 37170554 -125429376 - MLT2B1 LTR ERVL 0 520 483 351 0 0 0 chrX 37170554 37170593 -125429337 + (CA)n Simple_repeat Simple_repeat 2 40 0 1919 188 121 38 chrX 37170593 37171030 -125428900 - MLT2B1 LTR ERVL -37 483 1 1497 263 40 23 chrX 37171030 37171365 -125428565 - L2 LINE L2 -1100 2214 1869 231 250 18 18 chrX 37171519 37171575 -125428355 + MIR SINE MIR 95 150 -58 230 355 40 0 chrX 37172035 37172159 -125427771 + HAL1 LINE L1 537 665 -1842 1857 97 0 4 chrX 37222189 37222427 -125377503 - AluSx SINE Alu -75 237 1 2338 199 0 4 chrX 37222427 37222899 -125377031 + L1PB4 LINE L1 5686 6155 -1 707 301 112 19 chrX 37222954 37223479 -125376451 - L1ME3 LINE L1 -260 5902 5329 32 26 0 0 chrX 37223563 37223602 -125376328 + AT_rich Low_complexity Low_complexity 1 39 0 553 278 0 0 chrX 37223907 37224069 -125375861 - HAL1 LINE L1 -870 1637 1476 633 248 21 16 chrX 37224118 37224360 -125375570 - HAL1 LINE L1 -1133 1374 1132 1339 141 25 0 chrX 37224448 37224690 -125375240 - L1MA6 LINE L1 -1288 4858 4611 2813 141 48 35 chrX 37224693 37225974 -125373956 + L1MA6 LINE L1 4871 6251 -49 1750 169 3 36 chrX 37225974 37226282 -125373648 + AluJo SINE Alu 1 298 -14 2813 141 48 35 chrX 37226282 37226333 -125373597 + L1MA6 LINE L1 6251 6300 0 197 254 48 16 chrX 37226433 37226496 -125373434 - MIR SINE MIR -98 164 100 25 51 0 0 chrX 37227083 37227122 -125372808 + AT_rich Low_complexity Low_complexity 1 39 0 1855 151 17 86 chrX 37227252 37227669 -125372261 - MLT1B LTR MaLR -2 388 1 610 273 22 52 chrX 37227736 37227862 -125372068 - L1ME3A LINE L1 -221 5949 5821 1424 102 0 0 chrX 37227862 37228078 -125371852 - L1MA5A LINE L1 -4 6293 6078 610 273 22 52 chrX 37228078 37228318 -125371612 - L1ME3A LINE L1 -349 5821 5594 909 247 141 26 chrX 37228366 37228819 -125371111 + MLT1J LTR MaLR 3 507 -4 1491 129 21 135 chrX 37228936 37229276 -125370654 - AluYb8 SINE Alu -17 301 1 922 301 37 32 chrX 37229757 37230062 -125369868 - MLT1J2 LTR MaLR -37 413 104 966 308 28 36 chrX 37230062 37230530 -125369400 + LTR16B LTR ERVL 1 464 0 922 301 37 32 chrX 37230530 37230633 -125369297 - MLT1J2 LTR MaLR -346 104 3 309 235 1 55 chrX 37230638 37230798 -125369132 - L1ME LINE L1 -333 5829 5683 * 661 180 0 19 chrX 37230793 37230954 -125368976 + L1 LINE L1 4226 4383 -1763 20259 174 18 10 chrX 37230958 37233475 -125366455 + L1MA2 LINE L1 20 2515 -5050 2432 100 3 0 chrX 37233475 37233785 -125366145 + AluSp SINE Alu 1 311 -2 20259 174 18 10 chrX 37233785 37237254 -125362676 + L1MA2 LINE L1 2515 6056 -1509 5099 100 5 0 chrX 37237251 37238014 -125361916 + L1PA13 LINE L1 5397 6163 0 * 6727 124 41 9 chrX 37238003 37239630 -125360300 + L1MA2 LINE L1 6042 7720 -3 1223 179 13 80 chrX 37239661 37240035 -125359895 + L1 LINE L1 4377 4725 -1421 * 5132 157 12 7 chrX 37240033 37241274 -125358656 + L1PA16 LINE L1 4901 6145 -21 497 307 18 35 chrX 37241281 37241530 -125358400 - L1MC/D LINE L1 -496 5674 5439 245 321 27 9 chrX 37241949 37242061 -125357869 + (CATATA)n Simple_repeat Simple_repeat 4 117 0 219 204 0 0 chrX 37242063 37242112 -125357818 + (TG)n Simple_repeat Simple_repeat 2 50 0 275 244 0 67 chrX 37243079 37243169 -125356761 - L2 LINE L2 -1 3271 3188 1493 187 30 50 chrX 37244263 37244313 -125355617 - MLT1A2 LTR MaLR -17 357 308 2287 107 0 22 chrX 37244313 37244630 -125355300 - AluSx SINE Alu -2 310 1 1493 187 30 50 chrX 37244630 37244943 -125354987 - MLT1A2 LTR MaLR -66 308 1 721 307 8 12 chrX 37245197 37245451 -125354479 + MER90 LTR ERV1 1 253 -361 671 222 0 7 chrX 37245448 37245592 -125354338 + MER90 LTR ERV1 362 504 -110 * 2336 161 60 2 chrX 37246585 37246988 -125352942 + MSTB LTR MaLR 1 426 0 8941 165 47 4 chrX 37246988 37248571 -125351359 + MSTB-int LTR MaLR 1 1651 0 2420 165 54 2 chrX 37248571 37248976 -125350954 + MSTB LTR MaLR 1 426 0 773 239 103 4 chrX 37249007 37249241 -125350689 + MIR SINE MIR 3 259 -3 29 0 0 0 chrX 37249362 37249391 -125350539 + AT_rich Low_complexity Low_complexity 1 29 0 3863 158 59 1 chrX 37249580 37250296 -125349634 - MSTA-int LTR MaLR -894 757 1 2179 120 141 5 chrX 37250297 37250673 -125349257 - MSTA LTR MaLR -1 427 1 1159 265 65 22 chrX 37250680 37251050 -125348880 + MLT1I LTR MaLR 24 409 0 673 235 13 13 chrX 37251782 37251935 -125347995 - MER5B DNA MER1_type -6 172 20 1062 257 23 13 chrX 37251937 37252237 -125347693 - LTR16A LTR ERVL -7 443 141 2320 99 0 0 chrX 37252271 37252573 -125347357 - AluSg SINE Alu -8 302 1 22 35 0 0 chrX 37252654 37252683 -125347247 + AT_rich Low_complexity Low_complexity 1 29 0 730 256 62 50 chrX 37252701 37252959 -125346971 + MIR SINE MIR 2 262 0 2283 122 0 0 chrX 37253130 37253442 -125346488 + AluSx SINE Alu 1 312 0 1982 124 6 44 chrX 37253531 37253846 -125346084 + AluJb SINE Alu 3 305 -7 201 300 111 0 chrX 37253856 37253946 -125345984 - L2 LINE L2 -349 2923 2824 2106 221 76 73 chrX 37253960 37254752 -125345178 + MER21B LTR ERV1 12 805 -58 1389 262 11 47 chrX 37254901 37255344 -125344586 + LTR16A LTR ERVL 22 448 -2 2476 62 3 0 chrX 37255616 37255908 -125344022 + AluSc SINE Alu 1 293 -16 692 324 26 16 chrX 37256044 37256427 -125343503 - L1M4 LINE L1 -2685 3461 3075 258 32 0 0 chrX 37256484 37256515 -125343415 + (TG)n Simple_repeat Simple_repeat 2 32 0 455 300 69 46 chrX 37256644 37257037 -125342893 + L1MC4a LINE L1 4151 4552 -1594 198 118 0 0 chrX 37257053 37257087 -125342843 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chrX 37257088 37257116 -125342814 + AT_rich Low_complexity Low_complexity 1 28 0 508 284 73 51 chrX 37257122 37257686 -125342244 + L1MC4a LINE L1 4630 5205 -941 252 295 45 9 chrX 37258289 37258401 -125341529 - HERV16 LTR ERVL -1202 3794 3679 2876 328 29 11 chrX 37258433 37259181 -125340749 - HERV16 LTR ERVL -3583 1413 631 2289 71 44 0 chrX 37259181 37259475 -125340455 + AluY SINE Alu 1 307 -4 2876 328 29 11 chrX 37259475 37260007 -125339923 - HERV16 LTR ERVL -4365 631 110 1074 243 60 13 chrX 37260111 37260428 -125339502 - LTR16B LTR ERVL -4 460 129 353 259 28 19 chrX 37260598 37260706 -125339224 - LTR67 LTR ERVL 0 557 449 670 195 0 8 chrX 37260945 37261063 -125338867 - LTR28 LTR ERV1 -903 117 1 331 295 98 9 chrX 37261137 37261249 -125338681 - LTR67 LTR ERVL -400 157 36 299 353 25 5 chrX 37261313 37261517 -125338413 + L1MC4a LINE L1 5699 5906 -1902 2870 232 90 27 chrX 37261964 37262711 -125337219 + MER21B LTR ERV1 1 794 -69 2279 98 0 3 chrX 37263179 37263475 -125336455 - AluSq SINE Alu -17 296 2 758 323 56 46 chrX 37263690 37264102 -125335828 + LTR16C LTR ERVL 76 491 0 2782 247 48 19 chrX 37266788 37267557 -125332373 - L1ME1 LINE L1 -53 6113 5323 860 163 0 0 chrX 37267566 37267719 -125332211 - L1MD1 LINE L1 -8 6234 6082 22 0 0 0 chrX 37267739 37267761 -125332169 + AT_rich Low_complexity Low_complexity 1 22 0 6578 229 46 13 chrX 37267778 37270416 -125329514 - L1MD1 LINE L1 -454 5905 3177 240 111 0 0 chrX 37270784 37270820 -125329110 + MLT1B LTR MaLR 1 36 -354 1052 174 31 10 chrX 37271319 37271514 -125328416 - MER3 DNA MER1_type -10 199 1 412 221 75 79 chrX 37271753 37272007 -125327923 - L1ME4a LINE L1 -216 5905 5653 2381 178 26 5 chrX 37272626 37273043 -125326887 - MSTB LTR MaLR 0 426 1 974 157 35 12 chrX 37273646 37273672 -125326258 + MER3 DNA MER1_type 24 53 -156 368 227 70 76 chrX 37273672 37273844 -125326086 - MER3 DNA MER1_type 0 209 39 838 263 59 24 chrX 37275884 37276139 -125323791 - LTR16A LTR ERVL 0 450 187 2253 85 0 3 chrX 37277115 37277419 -125322511 - AluSx SINE Alu 0 303 1 24 32 0 0 chrX 37277701 37277732 -125322198 + AT_rich Low_complexity Low_complexity 1 31 0 694 219 0 0 chrX 37278140 37278268 -125321662 - MER2 DNA MER2_type -190 155 28 947 246 127 29 chrX 37278304 37278650 -125321280 + L1M4 LINE L1 155 534 -5862 688 200 0 21 chrX 37278677 37278817 -125321113 + AluJo SINE Alu 1 137 -175 211 194 0 0 chrX 37278817 37278853 -125321077 + (TAAG)n Simple_repeat Simple_repeat 1 36 0 1042 217 22 11 chrX 37278853 37279125 -125320805 + L1M4 LINE L1 570 844 -5552 3745 202 46 11 chrX 37279137 37280228 -125319702 + L1M4 LINE L1 4451 5579 -674 725 226 43 26 chrX 37280224 37280454 -125319476 + L1MEc LINE L1 1749 1982 -4414 * 791 247 92 64 chrX 37280442 37280512 -125319418 + L1MDa LINE L1 121 188 -6352 234 0 0 0 chrX 37280512 37280538 -125319392 + (TG)n Simple_repeat Simple_repeat 2 27 0 791 247 92 64 chrX 37280538 37280613 -125319317 + L1MDa LINE L1 188 259 -6281 180 0 0 0 chrX 37280613 37280633 -125319297 + (CAA)n Simple_repeat Simple_repeat 2 21 0 791 247 92 64 chrX 37280633 37280814 -125319116 + L1MDa LINE L1 259 457 -6083 245 311 38 61 chrX 37280863 37280995 -125318935 - MER39 LTR ERV1 -319 388 260 238 223 75 43 chrX 37280969 37281063 -125318867 - LTR48B LTR ERV1 -544 100 4 * 644 247 88 0 chrX 37281063 37281257 -125318673 + L1MC4a LINE L1 6248 6458 -1350 515 203 48 52 chrX 37281269 37281516 -125318414 + MER58 DNA MER1_type 2 2419 -1 850 224 87 9 chrX 37281516 37281735 -125318195 + L1MC3 LINE L1 6437 6672 -1113 16344 216 16 17 chrX 37282025 37287547 -125312383 - L1PA15 LINE L1 0 6816 1286 252 0 0 0 chrX 37287589 37287617 -125312313 + (TG)n Simple_repeat Simple_repeat 1 28 0 2301 317 36 22 chrX 37287624 37288529 -125311401 - L1PA15 LINE L1 -5869 918 1 294 167 0 19 chrX 37289588 37289642 -125310288 - Tigger5 DNA MER2_type 0 2323 2271 348 171 0 110 chrX 37289655 37289737 -125310193 - Tigger5 DNA MER2_type -2248 75 3 2037 131 133 16 chrX 37290007 37290390 -125309540 - MSTA LTR MaLR 0 428 1 8857 145 10 64 chrX 37290390 37292059 -125307871 - MSTA-int LTR MaLR 0 1580 3 1578 147 96 14 chrX 37292061 37292338 -125307592 - MSTA LTR MaLR 0 428 128 1747 131 4 4 chrX 37292338 37292597 -125307333 - THE1C LTR MaLR 0 375 117 337 179 43 10 chrX 37292594 37292694 -125307236 - LTR29 LTR ERV1 -90 617 452 * 31 0 0 0 chrX 37292694 37292725 -125307205 + AT_rich Low_complexity Low_complexity 1 31 0 424 287 23 8 chrX 37292763 37292892 -125307038 - MLT1I LTR MaLR -270 139 9 334 304 58 52 chrX 37292898 37293071 -125306859 + L1M4 LINE L1 3422 3592 -2554 6123 90 21 3 chrX 37293071 37294293 -125305637 + L1PA13 LINE L1 4924 6161 -2 334 304 58 52 chrX 37294293 37294566 -125305364 + L1M4 LINE L1 3592 3871 -2275 234 176 20 0 chrX 37294572 37294623 -125305307 - LTR66 LTR ERVL -166 444 393 471 291 45 27 chrX 37294736 37294956 -125304974 + L1M4 LINE L1 4025 4248 -1898 22866 180 20 21 chrX 37294959 37296236 -125303694 + L1PA11 LINE L1 20 1296 -6316 200 35 35 0 chrX 37296236 37296265 -125303665 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22866 180 20 21 chrX 37296265 37300875 -125299055 + L1PA11 LINE L1 1296 6983 -629 2327 81 10 0 chrX 37300875 37301171 -125298759 - AluY SINE Alu -12 299 1 22866 180 20 21 chrX 37301171 37301799 -125298131 + L1PA11 LINE L1 6983 7610 -2 561 251 130 69 chrX 37301905 37302267 -125297663 - MER34 LTR ERV1 0 542 159 2204 103 0 13 chrX 37302293 37302594 -125297336 - AluSc SINE Alu -10 299 3 2474 122 42 4 chrX 37302595 37303047 -125296883 - MER34B LTR ERV1 -31 534 1 347 336 68 0 chrX 37303047 37303193 -125296737 - MER34 LTR ERV1 -380 162 7 1163 208 14 58 chrX 37303234 37303348 -125296582 + L1ME2 LINE L1 5789 5906 -258 1837 216 92 33 chrX 37303348 37303858 -125296072 - MLT1F LTR MaLR -2 540 1 1163 208 14 58 chrX 37303858 37304090 -125295840 + L1ME2 LINE L1 5906 6120 -44 2268 105 0 0 chrX 37304110 37304406 -125295524 - AluSx SINE Alu -16 296 1 1852 131 47 7 chrX 37304557 37304832 -125295098 + AluJb SINE Alu 1 286 -26 838 249 160 21 chrX 37304888 37305376 -125294554 + L1ME3A LINE L1 5397 5957 -205 314 261 158 0 chrX 37306193 37306358 -125293572 + L1ME3A LINE L1 5731 5921 -249 661 270 74 46 chrX 37307262 37307649 -125292281 + LTR16A1 LTR ERVL 73 444 -13 1393 188 95 35 chrX 37308769 37309136 -125290794 - MLT1C LTR MaLR 0 467 79 438 319 75 46 chrX 37309173 37309507 -125290423 - LTR16A1 LTR ERVL -8 482 126 2352 104 0 0 chrX 37309605 37309903 -125290027 + AluSx SINE Alu 1 298 -14 1828 137 68 41 chrX 37309948 37310313 -125289617 + THE1C LTR MaLR 1 375 0 1461 234 168 78 chrX 37310544 37310983 -125288947 - MER66A LTR ERV1 -1 599 97 429 258 32 58 chrX 37311959 37312114 -125287816 - MIR SINE MIR -22 240 90 231 191 0 0 chrX 37312118 37312160 -125287770 + MER105 DNA DNA 1 42 -162 * 648 252 26 0 chrX 37312159 37312310 -125287620 - MER105 DNA DNA -42 162 8 434 245 7 52 chrX 37312781 37312936 -125286994 + Charlie7 DNA MER1_type 513 660 -1952 1509 210 92 0 chrX 37312958 37313272 -125286658 - MER2 DNA MER2_type -2 343 1 1897 161 39 6 chrX 37313288 37313624 -125286306 + MER7A DNA MER2_type 1 345 -1 226 268 21 21 chrX 37313743 37313885 -125286045 + (TA)n Simple_repeat Simple_repeat 1 142 0 723 241 86 0 chrX 37314670 37314844 -125285086 + MIR SINE MIR 47 235 -27 3288 128 48 77 chrX 37314948 37315132 -125284798 - LTR29 LTR ERV1 0 622 434 1598 175 28 7 chrX 37315132 37315418 -125284512 - AluJo SINE Alu -20 292 1 3288 128 48 77 chrX 37315418 37315750 -125284180 - LTR29 LTR ERV1 -188 434 125 2407 72 3 0 chrX 37315750 37316043 -125283887 - AluSp SINE Alu -18 295 2 3288 128 48 77 chrX 37316043 37316165 -125283765 - LTR29 LTR ERV1 -497 125 1 3619 113 11 9 chrX 37316333 37316881 -125283049 - MER34C LTR ERV1 0 585 37 368 198 42 172 chrX 37317309 37317501 -125282429 + MIR SINE MIR 96 262 0 486 279 14 27 chrX 37317980 37318127 -125281803 + MIR SINE MIR 74 218 -44 21 57 0 0 chrX 37318135 37318170 -125281760 + AT_rich Low_complexity Low_complexity 1 35 0 929 165 51 0 chrX 37318170 37318346 -125281584 - MER31A LTR ERV1 0 485 301 7306 205 4 6 chrX 37318347 37319928 -125280002 + L1 LINE L1 2285 3862 -2284 5421 150 48 113 chrX 37319937 37321239 -125278691 - MER61C-int LTR ERV1 -3577 1640 455 1972 177 11 0 chrX 37321239 37321590 -125278340 - THE1A LTR MaLR 0 355 1 5421 150 48 113 chrX 37321590 37321845 -125278085 - MER61C-int LTR ERV1 -4762 455 185 254 200 67 22 chrX 37321868 37321958 -125277972 - MER61C-int LTR ERV1 -6609 482 389 616 222 49 21 chrX 37321960 37322104 -125277826 - MER61C-int LTR ERV1 -5068 149 2 2428 125 47 21 chrX 37322104 37322527 -125277403 - MER61C LTR ERV1 0 434 1 548 271 101 23 chrX 37322622 37322713 -125277217 + MIR SINE MIR 11 93 -169 1619 189 16 45 chrX 37322713 37323089 -125276841 + MLT1A1 LTR MaLR 1 365 0 548 271 101 23 chrX 37323089 37323215 -125276715 + MIR SINE MIR 93 245 -17 885 246 101 43 chrX 37323257 37323602 -125276328 + MLT1A1 LTR MaLR 1 365 0 367 304 164 0 chrX 37323835 37324006 -125275924 + MER110 LTR ERV1 165 363 -128 2146 143 0 0 chrX 37324009 37324316 -125275614 - AluSx SINE Alu -5 307 1 1049 288 132 22 chrX 37324327 37324775 -125275155 + L2 LINE L2 2809 3305 -8 2792 77 5 11 chrX 37324821 37325196 -125274734 + THE1C LTR MaLR 3 375 0 196 214 48 0 chrX 37325378 37325420 -125274510 + L2 LINE L2 2715 2758 -556 1114 210 9 31 chrX 37325424 37325653 -125274277 + MER58A DNA MER1_type 1 224 0 2561 119 12 20 chrX 37325751 37326153 -125273777 - MER39B LTR ERV1 0 653 255 7285 48 0 0 chrX 37326160 37327440 -125272490 - L1PA5 LINE L1 0 6154 4873 642 43 0 0 chrX 37327440 37327533 -125272397 + L1P LINE L1 3211 3303 -2843 1306 133 80 49 chrX 37327533 37327796 -125272134 - MER39B LTR ERV1 -378 275 5 560 273 91 0 chrX 37327800 37327976 -125271954 + MIR SINE MIR 52 243 -19 227 274 157 20 chrX 37328715 37328868 -125271062 + MIR SINE MIR 67 240 -22 1286 255 54 22 chrX 37329206 37329727 -125270203 - MLT1E LTR MaLR -5 588 1 531 246 0 17 chrX 37329816 37329934 -125269996 + L2 LINE L2 3198 3313 0 4400 104 55 3 chrX 37331587 37332277 -125267653 + Tigger3(Golem) DNA MER2_type 2291 3016 -13 391 270 95 30 chrX 37332513 37332713 -125267217 + L2 LINE L2 3100 3312 -1 264 308 0 0 chrX 37334219 37334284 -125265646 + MIR3 SINE MIR 135 199 -9 213 383 83 11 chrX 37334282 37334462 -125265468 + L2 LINE L2 2832 3024 -248 * 191 237 220 25 chrX 37334938 37335056 -125264874 - L2 LINE L2 -9 3304 3164 201 356 58 29 chrX 37335185 37335359 -125264571 - L2 LINE L2 -338 2976 2798 5029 212 39 51 chrX 37335570 37336998 -125262932 - L1MD2 LINE L1 -1 6358 4978 180 0 0 0 chrX 37336998 37337018 -125262912 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5029 212 39 51 chrX 37337018 37338273 -125261657 - L1MD2 LINE L1 -1381 4978 3708 233 355 18 9 chrX 37339148 37339258 -125260672 - MIR SINE MIR -65 143 33 183 288 175 12 chrX 37339914 37339994 -125259936 + L2 LINE L2 3176 3268 -4 553 283 28 23 chrX 37340170 37340347 -125259583 + MIR SINE MIR 74 251 -11 229 280 60 0 chrX 37340386 37340436 -125259494 - L2 LINE L2 -18 3254 3202 478 248 41 0 chrX 37340436 37340557 -125259373 - MER119 DNA MER1_type -3 580 455 486 262 0 10 chrX 37340572 37340675 -125259255 - MER119 DNA MER1_type -481 102 1 1009 290 34 53 chrX 37341043 37341516 -125258414 + LTR16B LTR ERVL 1 464 0 2025 317 81 10 chrX 37342056 37342855 -125257075 + L2 LINE L2 1193 2048 -1266 569 259 29 29 chrX 37342917 37343087 -125256843 + L2 LINE L2 3140 3309 -4 313 233 35 35 chrX 37343678 37343764 -125256166 + MIR SINE MIR 172 257 -5 943 206 0 6 chrX 37344487 37344652 -125255278 - FAM SINE Alu -11 164 1 923 216 6 0 chrX 37344734 37344901 -125255029 + MER5A DNA MER1_type 4 171 -18 359 270 10 20 chrX 37345174 37345274 -125254656 - LTR16A LTR ERVL -9 441 343 243 306 28 89 chrX 37345292 37345472 -125254458 - LTR16A LTR ERVL -281 169 1 671 153 6 34 chrX 37346211 37346387 -125253543 + CT-rich Low_complexity Low_complexity 2 172 0 27 29 0 0 chrX 37346501 37346535 -125253395 + AT_rich Low_complexity Low_complexity 1 34 0 453 318 80 29 chrX 37346561 37346999 -125252931 + HAL1 LINE L1 17 512 -1995 948 56 6 37 chrX 37347117 37347279 -125252651 + (GAAA)n Simple_repeat Simple_repeat 2 158 0 591 224 109 102 chrX 37347284 37347470 -125252460 + HAL1 LINE L1 2044 2227 -280 3014 125 41 30 chrX 37347470 37347930 -125252000 + MER34B LTR ERV1 1 470 -95 1898 173 0 0 chrX 37347930 37348236 -125251694 - AluJb SINE Alu -6 306 1 3014 125 41 30 chrX 37348236 37348334 -125251596 + MER34B LTR ERV1 470 565 0 591 224 109 102 chrX 37348334 37348588 -125251342 + HAL1 LINE L1 2227 2487 -20 2699 93 5 11 chrX 37349569 37349946 -125249984 + THE1C LTR MaLR 1 375 0 197 268 18 18 chrX 37350599 37350655 -125249275 + MIR SINE MIR 20 75 -187 328 247 58 45 chrX 37350858 37351012 -125248918 + MIR SINE MIR 107 262 0 194 234 78 78 chrX 37351834 37351911 -125248019 - L2 LINE L2 -1 3312 3236 631 242 91 35 chrX 37352712 37352852 -125247078 - LTR16C LTR ERVL 0 491 360 1416 209 62 36 chrX 37352852 37353193 -125246737 + MLT2C1 LTR ERVL 1 332 -65 1164 34 34 0 chrX 37353193 37353402 -125246528 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 216 0 0 0 chrX 37353404 37353428 -125246502 + (TCCA)n Simple_repeat Simple_repeat 3 26 0 1416 209 62 36 chrX 37353428 37353468 -125246462 + MLT2C1 LTR ERVL 332 397 0 631 242 91 35 chrX 37353468 37353525 -125246405 - LTR16C LTR ERVL -131 360 283 225 267 0 0 chrX 37353530 37353575 -125246355 - LTR16C LTR ERVL -295 196 152 1902 150 4 0 chrX 37353778 37354058 -125245872 + AluSx SINE Alu 3 283 -29 620 271 157 0 chrX 37354441 37354651 -125245279 + MIR SINE MIR 18 260 -2 597 309 28 60 chrX 37355094 37355257 -125244673 + MIR SINE MIR 20 174 -88 765 243 114 5 chrX 37355257 37355459 -125244471 + MER58A DNA MER1_type 1 224 0 597 309 28 60 chrX 37355459 37355544 -125244386 + MIR SINE MIR 174 260 -2 506 256 40 0 chrX 37356601 37356726 -125243204 - MIR3 SINE MIR -23 185 56 971 213 10 0 chrX 37356826 37357023 -125242907 - MER115 DNA AcHobo -1 692 494 711 67 0 0 chrX 37357988 37358117 -125241813 + AluY SINE Alu 196 324 0 546 57 0 0 chrX 37358798 37358868 -125241062 + (TG)n Simple_repeat Simple_repeat 2 71 0 494 289 106 34 chrX 37359662 37360246 -125239684 + HAL1 LINE L1 1093 1718 -789 284 377 42 45 chrX 37360342 37360482 -125239448 + L2 LINE L2 2545 2684 -630 2478 73 0 9 chrX 37360482 37360798 -125239132 - AluSp SINE Alu 0 313 1 284 377 42 45 chrX 37360798 37360991 -125238939 + L2 LINE L2 2684 2877 -437 2364 235 38 26 chrX 37361494 37362078 -125237852 - MLT1E LTR MaLR 0 593 3 246 293 49 0 chrX 37362792 37362884 -125237046 - MIR SINE MIR -62 146 45 705 214 61 86 chrX 37363267 37363594 -125236336 + L1MC4 LINE L1 7723 8041 -1 379 277 9 18 chrX 37363601 37363713 -125236217 - MIR SINE MIR -86 176 66 2213 78 0 3 chrX 37364366 37364673 -125235257 + AluY SINE Alu 1 306 0 378 0 0 0 chrX 37366651 37366693 -125233237 + (TA)n Simple_repeat Simple_repeat 1 42 0 369 0 0 0 chrX 37366692 37366733 -125233197 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 216 182 23 0 chrX 37367588 37367632 -125232298 - L2 LINE L2 -1 3312 3268 269 285 52 81 chrX 37368526 37368812 -125231118 - LTR16A1 LTR ERVL 0 457 159 552 305 113 33 chrX 37370367 37371925 -125228005 - L1 LINE L1 -2325 3821 2147 229 273 99 12 chrX 37372139 37372311 -125227619 - L1M4 LINE L1 -2895 3251 3065 217 213 107 13 chrX 37372858 37372933 -125226997 + L2 LINE L2 2271 2352 -962 1484 213 12 82 chrX 37373568 37373968 -125225962 - MLT1A2 LTR MaLR -2 372 1 2164 282 18 12 chrX 37374492 37375165 -125224765 + L1ME3A LINE L1 35 711 -5685 * 2522 236 39 17 chrX 37375148 37375961 -125223969 + L1ME3A LINE L1 2725 3555 -2660 239 148 0 0 chrX 37375963 37376017 -125223913 + L1MD3 LINE L1 7942 7995 0 821 280 38 40 chrX 37376506 37376928 -125223002 + L1ME3A LINE L1 5542 5962 -277 207 0 0 0 chrX 37377129 37377152 -125222778 + (T)n Simple_repeat Simple_repeat 1 23 0 429 20 0 0 chrX 37377669 37377719 -125222211 + (TG)n Simple_repeat Simple_repeat 2 51 0 202 333 86 0 chrX 37378535 37378628 -125221302 - MIR3 SINE MIR -97 111 11 518 255 101 29 chrX 37379476 37379684 -125220246 - MIR SINE MIR -4 258 36 3103 78 49 5 chrX 37379957 37380345 -125219585 + MLT2A1 LTR ERVL 1 411 -33 258 32 0 0 chrX 37380345 37380376 -125219554 + (CA)n Simple_repeat Simple_repeat 1 31 0 3103 78 49 5 chrX 37380376 37380412 -125219518 + MLT2A1 LTR ERVL 411 444 0 4080 139 108 123 chrX 37380699 37380748 -125219182 + L1MC3 LINE L1 6711 6759 -1026 2260 125 0 0 chrX 37380748 37381060 -125218870 + AluSx SINE Alu 1 312 0 4080 139 108 123 chrX 37381060 37381411 -125218519 + L1MC3 LINE L1 6759 7114 -671 402 265 20 0 chrX 37381411 37381509 -125218421 + MLT1F1 LTR MaLR 35 134 -433 4080 139 108 123 chrX 37381509 37382091 -125217839 + L1MC3 LINE L1 7114 7775 -10 464 261 8 15 chrX 37383089 37383223 -125216707 - MER94 DNA DNA 0 134 2 301 279 13 0 chrX 37384773 37384852 -125215078 + MIR3 SINE MIR 104 183 -25 297 0 0 0 chrX 37386256 37386289 -125213641 + (CA)n Simple_repeat Simple_repeat 2 34 0 287 246 14 0 chrX 37386813 37386882 -125213048 - LTR16A LTR ERVL 0 450 381 663 238 85 40 chrX 37386883 37387106 -125212824 - LTR16A LTR ERVL -189 261 29 305 294 74 18 chrX 37387170 37387333 -125212597 - HAL1b LINE L1 -867 481 310 223 234 0 0 chrX 37388221 37388268 -125211662 + (TG)n Simple_repeat Simple_repeat 2 48 0 848 271 94 51 chrX 37388680 37389171 -125210759 + LTR33A LTR ERVL 1 512 -11 2321 245 37 37 chrX 37389691 37390331 -125209599 - MER77 LTR ERV1 -3 602 54 225 188 0 0 chrX 37390976 37391024 -125208906 + (TA)n Simple_repeat Simple_repeat 2 49 0 264 154 0 0 chrX 37391376 37391428 -125208502 + (CA)n Simple_repeat Simple_repeat 2 53 0 835 275 97 37 chrX 37391868 37392272 -125207658 - MLT1J2 LTR MaLR -2 448 21 993 266 68 37 chrX 37393089 37393603 -125206327 + MLT1G3 LTR MaLR 1 559 -8 316 321 65 24 chrX 37394026 37394194 -125205736 + MIR SINE MIR 78 252 -10 373 251 139 12 chrX 37394338 37394503 -125205427 + MIR SINE MIR 18 202 -60 2397 99 0 10 chrX 37394637 37394950 -125204980 + AluSx SINE Alu 1 310 -2 30 45 0 0 chrX 37396415 37396459 -125203471 + AT_rich Low_complexity Low_complexity 1 44 0 979 289 89 42 chrX 37396690 37397282 -125202648 - L1ME3A LINE L1 -217 5936 5317 1479 273 75 20 chrX 37397287 37397701 -125202229 + LTR48B LTR ERV1 107 556 -88 1865 122 0 0 chrX 37397701 37397956 -125201974 + AluSg SINE Alu 37 291 -19 1479 273 75 20 chrX 37397956 37398051 -125201879 + LTR48B LTR ERV1 556 644 0 295 297 73 29 chrX 37398056 37398329 -125201601 - L1ME3A LINE L1 -3139 2990 2706 653 312 81 46 chrX 37398473 37398715 -125201215 - L1MEd LINE L1 -5070 1059 827 2244 101 0 13 chrX 37398715 37399013 -125200917 + AluSq SINE Alu 1 294 -19 653 312 81 46 chrX 37399013 37399296 -125200634 - L1MEd LINE L1 -5302 827 529 511 227 52 34 chrX 37449310 37449473 -125150457 - L1ME LINE L1 -580 5586 5422 1829 126 36 27 chrX 37449473 37449774 -125150156 - AluJo SINE Alu -8 304 1 511 227 52 34 chrX 37449774 37449817 -125150113 - L1ME LINE L1 -744 5422 5381 717 295 11 0 chrX 37449845 37450113 -125149817 - L1ME LINE L1 -3126 3020 2750 427 308 124 49 chrX 37450277 37450663 -125149267 + L1M4 LINE L1 2779 3193 -2953 407 241 47 99 chrX 37450676 37450867 -125149063 - MLT1J2 LTR MaLR 0 450 270 355 350 6 17 chrX 37451103 37451283 -125148647 + L1M4 LINE L1 3251 3428 -2718 912 196 105 40 chrX 37451298 37451594 -125148336 - MER39 LTR ERV1 0 707 393 660 170 21 50 chrX 37451611 37451752 -125148178 + MER34C LTR ERV1 323 459 -126 1252 222 48 4 chrX 37451752 37452022 -125147908 - MER4D LTR ERV1 0 903 622 22 35 0 0 chrX 37452169 37452198 -125147732 + AT_rich Low_complexity Low_complexity 1 29 0 379 132 0 0 chrX 37452207 37452260 -125147670 + LTR23-int LTR ERV1 3732 3784 -1433 451 125 0 12 chrX 37452341 37452421 -125147509 + LTR23-int LTR ERV1 1500 1578 -3545 811 204 2 37 chrX 37452428 37452630 -125147300 + MER61E LTR ERV1 347 779 0 2858 227 54 36 chrX 37452799 37453848 -125146082 + LTR23-int LTR ERV1 756 2646 -3685 487 254 148 6 chrX 37453850 37454019 -125145911 + MER34C LTR ERV1 160 352 -233 1639 179 103 92 chrX 37454020 37454177 -125145753 + LTR23-int LTR ERV1 1169 1323 -3800 1787 161 20 17 chrX 37454177 37454475 -125145455 + AluSx SINE Alu 1 299 -13 1639 179 103 92 chrX 37454475 37454554 -125145376 + LTR23-int LTR ERV1 1323 1400 -3723 2219 111 3 0 chrX 37454554 37454851 -125145079 + AluSc SINE Alu 1 298 -11 1639 179 103 92 chrX 37454851 37455187 -125144743 + LTR23-int LTR ERV1 1400 1748 -3375 706 62 0 21 chrX 37455287 37455383 -125144547 + MER11D LTR ERVK 804 897 0 1574 180 50 0 chrX 37455425 37455581 -125144349 - AluJo SINE Alu -20 292 114 213 65 0 0 chrX 37455581 37455612 -125144318 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1574 180 50 0 chrX 37455612 37455733 -125144197 - AluJo SINE Alu -198 114 1 1740 83 0 0 chrX 37456069 37456285 -125143645 + AluSc SINE Alu 84 299 -10 594 220 15 8 chrX 37457184 37457316 -125142614 + MER94 DNA DNA 1 133 -1 8535 104 16 37 chrX 37458204 37458619 -125141311 + HSMAR2 DNA Mariner 1 423 -879 1965 111 117 27 chrX 37458619 37458953 -125140977 + THE1B LTR MaLR 1 364 0 12149 76 8 1 chrX 37458953 37460522 -125139408 + THE1B-int LTR MaLR 1 1580 0 2372 127 8 24 chrX 37460522 37460892 -125139038 + THE1B LTR MaLR 1 364 0 8535 104 16 37 chrX 37460892 37461554 -125138376 + HSMAR2 DNA Mariner 421 1095 -207 1672 174 7 14 chrX 37461554 37461835 -125138095 + AluJo SINE Alu 4 282 -30 207 0 0 0 chrX 37461838 37461861 -125138069 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8535 104 16 37 chrX 37461861 37462105 -125137825 + HSMAR2 DNA Mariner 1097 1301 -1 1890 202 8 11 chrX 37462760 37463126 -125136804 - MLT1A1 LTR MaLR 0 365 1 293 305 36 24 chrX 37463300 37463488 -125136442 - MLT1I LTR MaLR 0 422 267 2023 233 89 43 chrX 37465119 37465725 -125134205 + MER21B LTR ERV1 19 652 -211 316 241 49 28 chrX 37466016 37466124 -125133806 + MER5A DNA MER1_type 70 189 0 361 219 79 72 chrX 37467115 37467380 -125132550 + HAL1 LINE L1 848 1114 -1393 1841 94 11 11 chrX 37467675 37467940 -125131990 - L1PA11 LINE L1 0 6174 5910 1031 211 68 48 chrX 37467992 37468347 -125131583 + L1M1 LINE L1 3251 3612 -3953 * 2618 29 0 0 chrX 37468339 37468652 -125131278 - L1HS LINE L1 -1081 5065 4753 7810 9 3 2 chrX 37468652 37469728 -125130202 + L1HS LINE L1 5063 6139 -16 266 98 20 0 chrX 37469728 37469779 -125130151 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 225 0 0 0 chrX 37469916 37469941 -125129989 + (A)n Simple_repeat Simple_repeat 1 25 0 12346 186 33 22 chrX 37469941 37471440 -125128490 + L1MDa LINE L1 2570 4051 -2489 186 71 0 0 chrX 37471440 37471468 -125128462 + (CAA)n Simple_repeat Simple_repeat 3 30 0 12346 186 33 22 chrX 37471468 37471551 -125128379 + L1MDa LINE L1 4051 4132 -2408 1886 141 61 3 chrX 37471551 37471877 -125128053 + L1PB3 LINE L1 5803 6147 -7 12346 186 33 22 chrX 37471877 37473107 -125126823 + L1MDa LINE L1 4132 5411 -1129 4463 49 0 0 chrX 37473106 37473658 -125126272 - L1P LINE L1 -1191 4955 4404 * 486 254 124 64 chrX 37474211 37474667 -125125263 - L1MC5 LINE L1 -58 7903 7397 2008 143 42 66 chrX 37474667 37475093 -125124837 + MER47B DNA MER2_type 3 418 0 486 254 124 64 chrX 37475093 37475265 -125124665 - L1MC5 LINE L1 -564 7397 7237 351 0 0 0 chrX 37476052 37476091 -125123839 + (CA)n Simple_repeat Simple_repeat 1 39 0 2043 165 32 54 chrX 37476731 37477173 -125122757 + MSTB1 LTR MaLR 1 432 0 644 74 11 0 chrX 37477589 37477684 -125122246 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1968 121 50 0 chrX 37477740 37478021 -125121909 + AluSq SINE Alu 1 295 -18 794 215 83 68 chrX 37478210 37478657 -125121273 - L1MC5 LINE L1 -34 7927 7471 2049 123 10 0 chrX 37478657 37478959 -125120971 - AluSx SINE Alu -7 305 1 794 215 83 68 chrX 37478959 37478980 -125120950 - L1MC5 LINE L1 -490 7471 7452 22 56 0 0 chrX 37479105 37479141 -125120789 + AT_rich Low_complexity Low_complexity 1 36 0 416 192 0 0 chrX 37479200 37479273 -125120657 + MER116 DNA Mariner 3 75 -5 792 254 0 0 chrX 37479312 37479497 -125120433 + L1MC5 LINE L1 6643 6827 -1134 26 0 0 0 chrX 37480150 37480176 -125119754 + AT_rich Low_complexity Low_complexity 1 26 0 301 217 80 94 chrX 37480635 37480773 -125119157 - HAL1 LINE L1 -1229 1278 1143 1803 181 47 49 chrX 37480885 37481191 -125118739 + MER31B LTR ERV1 38 344 -122 2066 152 6 3 chrX 37481191 37481546 -125118384 - MER46B DNA MER2_type -1 235 5 1803 181 47 49 chrX 37481546 37481669 -125118261 + MER31B LTR ERV1 344 466 0 199 204 23 0 chrX 37483072 37483116 -125116814 - MIR SINE MIR -121 141 97 5938 155 21 35 chrX 37483274 37485411 -125114519 + L1MA8 LINE L1 5068 6678 -7 313 113 0 0 chrX 37485513 37485566 -125114364 + L1MA8 LINE L1 6236 6288 -3 15485 171 44 9 chrX 37485575 37489976 -125109954 + L1PBa LINE L1 1 4555 -2307 2621 59 0 12 chrX 37490076 37490414 -125109516 + L1PA8A LINE L1 5798 6131 0 2275 109 42 25 chrX 37492921 37493279 -125106651 - THE1B LTR MaLR 0 364 1 796 211 67 39 chrX 37493853 37494061 -125105869 + MIR SINE MIR 49 262 0 180 0 0 0 chrX 37494418 37494438 -125105492 + (TG)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chrX 37495690 37495710 -125104220 + (CAA)n Simple_repeat Simple_repeat 2 21 0 468 329 20 0 chrX 37495991 37496143 -125103787 + MLT1F LTR MaLR 388 542 0 388 298 116 6 chrX 37496143 37496324 -125103606 + MLT1F1-int LTR MaLR 1 201 -1170 1011 167 17 103 chrX 37496364 37496532 -125103398 - AluJo SINE Alu -15 297 153 221 0 0 33 chrX 37496532 37496562 -125103368 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1011 167 17 103 chrX 37496562 37496626 -125103304 - AluJo SINE Alu -159 153 85 787 258 40 20 chrX 37496626 37496878 -125103052 + MLT1F1-int LTR MaLR 345 601 -770 983 309 78 67 chrX 37497123 37497779 -125102151 + MLT1F1-int LTR MaLR 704 1366 -5 1791 253 58 17 chrX 37497784 37498318 -125101612 + MLT1F1 LTR MaLR 1 559 -8 1759 213 229 26 chrX 37498327 37498904 -125101026 + MER39 LTR ERV1 12 705 -2 25 0 0 0 chrX 37498922 37498947 -125100983 + AT_rich Low_complexity Low_complexity 1 25 0 663 306 102 44 chrX 37498957 37499665 -125100265 + L1M4 LINE L1 2211 2877 -3269 2818 73 92 5 chrX 37499665 37500077 -125099853 + LTR7 LTR ERV1 1 448 -2 663 306 102 44 chrX 37500077 37500949 -125098981 + L1M4 LINE L1 2877 3933 -2213 25 51 0 0 chrX 37501023 37501062 -125098868 + AT_rich Low_complexity Low_complexity 1 39 0 687 276 110 33 chrX 37502126 37502463 -125097467 + MER34C LTR ERV1 1 363 -222 383 280 116 94 chrX 37502752 37503124 -125096806 + MLT1H LTR MaLR 168 547 -2 2077 147 0 0 chrX 37503144 37503456 -125096474 + AluJo SINE Alu 1 312 0 463 286 14 29 chrX 37503817 37503957 -125095973 - L2 LINE L2 -272 3041 2904 2394 90 0 0 chrX 37504749 37505049 -125094881 + AluSc SINE Alu 1 300 -9 24 0 0 0 chrX 37505078 37505102 -125094828 + AT_rich Low_complexity Low_complexity 1 24 0 2281 75 0 26 chrX 37505488 37505796 -125094134 + AluY SINE Alu 12 311 0 25 51 0 0 chrX 37505943 37505982 -125093948 + AT_rich Low_complexity Low_complexity 1 39 0 1682 162 10 27 chrX 37507807 37508104 -125091826 - AluJo SINE Alu -20 292 1 457 230 191 51 chrX 37508207 37508464 -125091466 - L1MC4 LINE L1 -272 7770 7478 2147 136 0 7 chrX 37508538 37508847 -125091083 - AluSq SINE Alu -6 307 1 3241 205 18 29 chrX 37508870 37509642 -125090288 + MER97a DNA MER1_type? 118 881 -13 1919 162 46 14 chrX 37509688 37510039 -125089891 - LOR1b LTR ERV1 0 461 100 1370 268 55 81 chrX 37510104 37510923 -125089007 - L2 LINE L2 0 3313 2516 1450 251 79 24 chrX 37511246 37511752 -125088178 - L1ME3A LINE L1 -3 6167 5634 1826 117 37 0 chrX 37511880 37512153 -125087777 - MER49 LTR ERV1 -640 283 1 754 112 48 8 chrX 37512153 37512278 -125087652 + MER34C LTR ERV1 456 585 0 357 369 60 4 chrX 37512332 37512600 -125087330 - L1ME3A LINE L1 -224 6015 5733 353 248 87 31 chrX 37512610 37512771 -125087159 + LTR68 LTR ERV1 8 177 -563 539 296 65 30 chrX 37513194 37513858 -125086072 - L1ME3A LINE L1 -517 5716 5033 315 0 0 0 chrX 37514119 37514154 -125085776 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 324 0 0 0 chrX 37514153 37514189 -125085741 + (GA)n Simple_repeat Simple_repeat 1 36 0 470 288 106 49 chrX 37514505 37515054 -125084876 - L1ME3A LINE L1 -1216 4999 4420 826 350 68 14 chrX 37515054 37515494 -125084436 + LTR16B LTR ERVL 1 464 0 2411 329 26 13 chrX 37515928 37516113 -125083817 + HERV16 LTR ERVL 469 650 -4346 937 55 86 0 chrX 37516113 37516241 -125083689 + MER85 DNA T2_type 1 139 0 2411 329 26 13 chrX 37516241 37516970 -125082960 + HERV16 LTR ERVL 650 1395 -3601 408 313 72 19 chrX 37517552 37517844 -125082086 - L1ME3A LINE L1 -1038 1538 1237 2730 186 141 19 chrX 37518182 37518879 -125081051 + LTR48 LTR ERV1 1 782 -5 3324 156 10 21 chrX 37519030 37519622 -125080308 + MER34C LTR ERV1 1 585 0 412 240 39 78 chrX 37519847 37519932 -125079998 - L1ME3A LINE L1 -177 5993 5906 2809 174 131 13 chrX 37519932 37520564 -125079366 - MER39 LTR ERV1 0 707 1 412 240 39 78 chrX 37520564 37520581 -125079349 - L1ME3A LINE L1 -264 5906 5890 1163 210 114 50 chrX 37520581 37520924 -125079006 - MLT1A1 LTR MaLR 0 365 1 412 240 39 78 chrX 37520924 37521024 -125078906 - L1ME3A LINE L1 -280 5890 5798 1478 187 28 3 chrX 37521024 37521307 -125078623 + MLT1A1 LTR MaLR 1 290 -75 419 284 24 0 chrX 37521307 37521434 -125078496 - L1ME3A LINE L1 -544 5626 5497 * 754 281 15 0 chrX 37521430 37521633 -125078297 - L1ME LINE L1 -534 5636 5431 3209 216 33 31 chrX 37521641 37522164 -125077766 - L1ME1 LINE L1 -50 6185 5665 1771 110 103 15 chrX 37522164 37522437 -125077493 + AluSg SINE Alu 1 297 -13 3209 216 33 31 chrX 37522437 37522915 -125077015 - L1ME1 LINE L1 -570 5665 5186 3139 44 65 30 chrX 37522915 37523344 -125076586 - MLT2A1 LTR ERVL 0 444 1 3209 216 33 31 chrX 37523344 37523476 -125076454 - L1ME1 LINE L1 -1049 5186 5056 2571 231 30 52 chrX 37523483 37524288 -125075642 - L1ME1 LINE L1 -5576 820 34 229 239 53 18 chrX 37524282 37524395 -125075535 - L1ME LINE L1 -2378 5430 5314 * 434 276 108 84 chrX 37525474 37525688 -125074242 - MLT1H LTR MaLR -16 533 315 656 215 67 77 chrX 37525700 37525909 -125074021 - LTR48B LTR ERV1 0 644 438 2311 124 41 41 chrX 37525916 37526205 -125073725 + LTR23 LTR ERV1 1 292 -145 1853 134 4 0 chrX 37526205 37526474 -125073456 + AluSq SINE Alu 44 313 0 2311 124 41 41 chrX 37526474 37526621 -125073309 + LTR23 LTR ERV1 291 437 0 3340 128 23 15 chrX 37527339 37527861 -125072069 + MER61E LTR ERV1 1 526 -43 6064 229 81 72 chrX 37527894 37530637 -125069293 + HUERS-P3b LTR ERV1 37 870 -4347 4081 175 1 13 chrX 37530647 37531337 -125068593 - LTR8 LTR ERV1 -9 682 1 7620 150 29 36 chrX 37531337 37534359 -125065571 + HUERS-P3b LTR ERV1 868 5175 -450 907 206 38 5 chrX 37534362 37534546 -125065384 + HUERS-P3 LTR ERV1 8730 8919 0 2387 106 52 3 chrX 37534546 37534895 -125065035 + MER61E LTR ERV1 1 366 -203 2000 124 3 24 chrX 37534897 37535188 -125064742 + AluSx SINE Alu 1 285 -27 518 194 106 17 chrX 37535313 37535493 -125064437 + LTR23-int LTR ERV1 1726 1921 -3202 1019 197 98 26 chrX 37535533 37535767 -125064163 - MSTA LTR MaLR -177 251 1 8698 164 67 28 chrX 37535767 37536023 -125063907 + LTR23-int LTR ERV1 2157 2402 -3929 2661 94 8 3 chrX 37536023 37536384 -125063546 + THE1B LTR MaLR 1 363 -1 8698 164 67 28 chrX 37536384 37536782 -125063148 + LTR23-int LTR ERV1 2402 2783 -3548 2213 93 37 0 chrX 37536782 37537082 -125062848 - AluSq SINE Alu 0 313 3 8698 164 67 28 chrX 37537082 37538652 -125061278 + LTR23-int LTR ERV1 2783 5669 -662 629 195 0 8 chrX 37538665 37538788 -125061142 + LTR23-int LTR ERV1 4784 4905 -218 2233 148 38 23 chrX 37538902 37539329 -125060601 + LTR23 LTR ERV1 4 436 -1 634 214 60 38 chrX 37539330 37539661 -125060269 - LTR48B LTR ERV1 -214 573 1 375 290 14 14 chrX 37539791 37539929 -125060001 - MLT1H LTR MaLR -389 160 23 3237 148 22 55 chrX 37539933 37540555 -125059375 - LTR29 LTR ERV1 -20 602 1 2870 170 33 95 chrX 37540741 37541478 -125058452 + LTR8 LTR ERV1 1 691 0 2173 124 0 3 chrX 37541723 37542029 -125057901 + AluSg SINE Alu 1 305 -5 21 36 0 0 chrX 37542046 37542074 -125057856 + AT_rich Low_complexity Low_complexity 1 28 0 257 284 0 87 chrX 37542990 37543117 -125056813 - HAL1b LINE L1 -869 479 364 845 295 136 30 chrX 37543268 37543732 -125056198 - LTR33 LTR ERVL 0 521 9 1911 190 31 39 chrX 37544593 37544912 -125055018 + MLT2D LTR ERVL 2 322 -92 1832 170 28 25 chrX 37544912 37545276 -125054654 + MLT1A1 LTR MaLR 1 365 0 1911 190 31 39 chrX 37545276 37545333 -125054597 + MLT2D LTR ERVL 322 377 -37 279 79 0 0 chrX 37545333 37545371 -125054559 + (CA)n Simple_repeat Simple_repeat 2 39 0 1911 190 31 39 chrX 37545371 37545409 -125054521 + MLT2D LTR ERVL 377 414 0 431 263 36 7 chrX 37545936 37546073 -125053857 - LTR16C LTR ERVL 0 491 351 1623 207 66 35 chrX 37546076 37546563 -125053367 - MLT1D LTR MaLR 0 505 4 420 193 45 0 chrX 37546628 37546716 -125053214 - MLT2F LTR ERVL -571 92 1 823 193 84 92 chrX 37546716 37547109 -125052821 - ERVL-F LTR ERVL -8 5756 5367 1859 197 22 17 chrX 37547121 37547481 -125052449 + LTR49-int LTR ERV1 484 845 -5486 2179 116 10 54 chrX 37547514 37547782 -125052148 + LTR49-int LTR ERV1 842 1089 -5242 2456 85 3 0 chrX 37547782 37548089 -125051841 + AluSx SINE Alu 1 308 -4 2179 116 10 54 chrX 37548089 37548209 -125051721 + LTR49-int LTR ERV1 1089 1213 -5118 384 261 0 0 chrX 37548209 37548278 -125051652 + tRNA-Glu-GAG tRNA tRNA 7 75 0 484 137 0 11 chrX 37548331 37548426 -125051504 + LTR48B-int LTR ERV1 1290 1383 -4948 969 118 13 7 chrX 37548539 37548691 -125051239 + LTR48B-int LTR ERV1 1377 1529 -4802 511 112 22 0 chrX 37548691 37548780 -125051150 + G-rich Low_complexity Low_complexity 4 94 0 659 20 40 20 chrX 37548784 37548885 -125051045 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 9223 131 21 35 chrX 37548887 37550474 -125049456 + LTR48B-int LTR ERV1 1528 3091 -3240 476 115 11 0 chrX 37550465 37550552 -125049378 + LTR48B-int LTR ERV1 4296 4383 -1948 * 7518 164 20 13 chrX 37550561 37552160 -125047770 + LTR48B-int LTR ERV1 4510 6164 -167 1098 217 9 5 chrX 37552257 37552469 -125047461 + LTR48B LTR ERV1 1 213 -431 226 146 73 0 chrX 37553888 37553929 -125046001 + MLT1J LTR MaLR 109 152 -359 1123 211 136 19 chrX 37553933 37554293 -125045637 - LTR48B LTR ERV1 0 644 243 1371 250 91 62 chrX 37554990 37555825 -125044105 + L2 LINE L2 2464 3307 -6 2012 256 136 6 chrX 37556411 37556949 -125042981 + MLT2F LTR ERVL 1 608 -55 1002 128 47 90 chrX 37557011 37557222 -125042708 + MER20 DNA MER1_type 1 202 -17 5985 266 60 33 chrX 37557305 37557494 -125042436 + ERVL-F LTR ERVL 2 184 -5580 715 195 158 62 chrX 37557494 37557894 -125042036 + LTR21B LTR ERV1 1 438 0 5985 266 60 33 chrX 37557894 37558669 -125041261 + ERVL-F LTR ERVL 184 936 -4828 1485 162 71 81 chrX 37558669 37559063 -125040867 - MLT1B LTR MaLR 0 390 1 5985 266 60 33 chrX 37559063 37559500 -125040430 + ERVL-F LTR ERVL 936 1360 -4404 2429 182 24 4 chrX 37559500 37559956 -125039974 + MLT1C LTR MaLR 3 467 0 5985 266 60 33 chrX 37559956 37560771 -125039159 + ERVL-F LTR ERVL 1360 2351 -3413 348 225 0 0 chrX 37560777 37560848 -125039082 + MLT1E LTR MaLR 75 145 -448 1571 217 108 35 chrX 37560862 37561268 -125038662 + MLT1E LTR MaLR 114 549 -44 722 303 64 47 chrX 37561771 37562072 -125037858 + L1MEd LINE L1 844 1138 -5258 2370 42 3 17 chrX 37562072 37562384 -125037546 + AluY SINE Alu 1 308 0 722 303 64 47 chrX 37562384 37562811 -125037119 + L1MEd LINE L1 1138 1645 -4751 1403 167 9 123 chrX 37562811 37563152 -125036778 + AluJo SINE Alu 1 302 0 722 303 64 47 chrX 37563152 37563273 -125036657 + L1MEd LINE L1 1645 1762 -4634 22 0 0 0 chrX 37563328 37563350 -125036580 + AT_rich Low_complexity Low_complexity 1 22 0 541 335 34 44 chrX 37563461 37563757 -125036173 - MLT1I LTR MaLR -19 390 98 1075 259 79 10 chrX 37564061 37564559 -125035371 + L1MEd LINE L1 2113 2599 -3616 216 0 0 0 chrX 37564663 37564687 -125035243 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1781 177 3 0 chrX 37564697 37564985 -125034945 - AluJb SINE Alu -23 289 1 26 50 0 0 chrX 37565642 37565682 -125034248 + AT_rich Low_complexity Low_complexity 1 40 0 260 246 8 51 chrX 37565958 37566076 -125033854 + HAL1b LINE L1 318 430 -918 21 0 0 0 chrX 37566390 37566411 -125033519 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chrX 37568403 37568447 -125031483 + AT_rich Low_complexity Low_complexity 1 44 0 260 70 23 0 chrX 37568598 37568641 -125031289 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1910 112 106 124 chrX 37569647 37570083 -125029847 + MSTA LTR MaLR 1 428 0 881 281 63 1 chrX 37570097 37570472 -125029458 + MLT1H LTR MaLR 129 547 -2 345 62 0 0 chrX 37572043 37572091 -125027839 + (TG)n Simple_repeat Simple_repeat 2 49 0 860 344 65 34 chrX 37572478 37573244 -125026686 - L2 LINE L2 -4 3309 2521 23829 143 16 15 chrX 37573268 37578085 -125021845 - L1MA3 LINE L1 -6 7718 2878 186 43 0 0 chrX 37578085 37578108 -125021822 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23829 143 16 15 chrX 37578108 37580979 -125018951 - L1MA3 LINE L1 -4846 2878 13 372 305 93 61 chrX 37580981 37581227 -125018703 - L2 LINE L2 -814 2500 2247 1003 274 121 40 chrX 37581526 37581982 -125017948 + L2 LINE L2 125 617 -2697 276 288 90 0 chrX 37581995 37582106 -125017824 + L2 LINE L2 837 957 -2357 199 345 14 42 chrX 37582109 37582251 -125017679 + L2 LINE L2 1239 1376 -1938 1090 280 61 53 chrX 37582436 37583082 -125016848 + L2 LINE L2 2661 3313 0 274 388 33 0 chrX 37583137 37583289 -125016641 - L2 LINE L2 -926 2388 2232 2231 186 60 25 chrX 37583299 37583783 -125016147 - MLT1D LTR MaLR -2 503 3 209 321 45 70 chrX 37583827 37584070 -125015860 - L2 LINE L2 -1232 2082 1846 480 200 0 0 chrX 37584811 37584896 -125015034 + MIR SINE MIR 71 155 -107 590 246 128 11 chrX 37584960 37585139 -125014791 - MIR SINE MIR 0 262 63 1411 143 0 74 chrX 37585348 37585543 -125014387 + MSTB LTR MaLR 1 176 -250 2421 81 0 3 chrX 37585543 37585850 -125014080 + AluY SINE Alu 1 306 -5 1411 143 0 74 chrX 37585850 37585898 -125014032 + MSTB LTR MaLR 176 226 -200 1268 155 15 19 chrX 37585899 37586105 -125013825 - AluJo SINE Alu -13 299 95 248 310 14 0 chrX 37586134 37586205 -125013725 + LTR33 LTR ERVL 150 221 -300 591 259 44 34 chrX 37586237 37586442 -125013488 + LTR33 LTR ERVL 307 513 -8 234 307 130 61 chrX 37587139 37587370 -125012560 + MIR SINE MIR 16 262 0 2714 7 3 10 chrX 37588293 37588598 -125011332 - AluYa5 SINE Alu -8 303 1 782 255 50 13 chrX 37588705 37588969 -125010961 + LTR16A1 LTR ERVL 195 451 -6 217 402 21 0 chrX 37589032 37589129 -125010801 - L2 LINE L2 -223 3049 2951 272 291 96 10 chrX 37589155 37589270 -125010660 + MIR SINE MIR 8 130 -78 4893 129 18 0 chrX 37589283 37590067 -125009863 - L1MA4 LINE L1 -12 7707 6910 491 72 63 0 chrX 37590069 37590180 -125009750 + (TA)n Simple_repeat Simple_repeat 2 119 0 1809 148 3 44 chrX 37590181 37590673 -125009257 - L1MA4 LINE L1 -743 6822 6427 7518 30 5 0 chrX 37590673 37591867 -125008063 - L1PA5 LINE L1 -5 6149 4955 8655 49 2 0 chrX 37591867 37592937 -125006993 + L1PA5 LINE L1 3884 4955 -1191 * 12557 189 35 24 chrX 37592936 37594169 -125005761 - L1MA4 LINE L1 -1129 6436 5217 1886 141 61 3 chrX 37594169 37594495 -125005435 - L1PB3 LINE L1 -7 6147 5803 12557 189 35 24 chrX 37594495 37594578 -125005352 - L1MA4 LINE L1 -2348 5217 5136 186 71 0 0 chrX 37594578 37594606 -125005324 + (TTG)n Simple_repeat Simple_repeat 3 30 0 12557 189 35 24 chrX 37594606 37596440 -125003490 - L1MA4 LINE L1 -2429 5136 3251 1834 103 11 15 chrX 37596484 37596757 -125003173 + L1PA11 LINE L1 5903 6174 0 361 219 79 72 chrX 37597052 37597317 -125002613 - HAL1 LINE L1 -1393 1114 848 371 270 48 40 chrX 37598308 37598434 -125001496 - MER5A DNA MER1_type 0 189 63 781 206 26 5 chrX 37598440 37598634 -125001296 - L1MC2 LINE L1 -11 6333 6136 2033 148 88 3 chrX 37598634 37598992 -125000938 - L1MC3 LINE L1 -193 7592 7204 295 225 45 22 chrX 37598992 37599081 -125000849 - MLT1F1 LTR MaLR -434 133 43 279 170 38 0 chrX 37599201 37599254 -125000676 + MER5B DNA MER1_type 123 177 -1 206 231 0 0 chrX 37601196 37601235 -124998695 + (CA)n Simple_repeat Simple_repeat 1 39 0 327 331 115 0 chrX 37602228 37602367 -124997563 - LTR67 LTR ERVL -367 190 36 2065 129 13 10 chrX 37602420 37602729 -124997201 + AluSx SINE Alu 1 310 -2 268 281 67 52 chrX 37603291 37603426 -124996504 - L2 LINE L2 -4 3268 3132 508 176 69 0 chrX 37603596 37603698 -124996232 + L1MC4 LINE L1 7925 8033 -9 25 0 0 0 chrX 37604164 37604189 -124995741 + AT_rich Low_complexity Low_complexity 1 25 0 189 74 0 0 chrX 37604964 37604991 -124994939 + (T)n Simple_repeat Simple_repeat 1 27 0 962 146 61 0 chrX 37605234 37605399 -124994531 + MER20 DNA MER1_type 45 219 0 1699 161 20 10 chrX 37605495 37605787 -124994143 - AluJb SINE Alu -17 295 1 1143 177 149 46 chrX 37606227 37606555 -124993375 + MLT1A1 LTR MaLR 4 365 0 22 0 0 0 chrX 37607050 37607072 -124992858 + AT_rich Low_complexity Low_complexity 1 22 0 42810 30 23 1 chrX 37607078 37613079 -124986851 - L1PA2 LINE L1 -2 6153 22 1599 303 82 42 chrX 37614651 37615544 -124984386 + L2 LINE L2 2147 3080 -233 451 301 114 88 chrX 37615857 37616121 -124983809 - MLT1J LTR MaLR 0 511 228 5439 136 21 9 chrX 37616121 37617350 -124982580 + L1PA16 LINE L1 4932 6166 0 451 301 114 88 chrX 37617350 37617560 -124982370 - MLT1J LTR MaLR -283 228 25 418 347 33 50 chrX 37617650 37617892 -124982038 + L2 LINE L2 2853 3090 -182 450 247 73 0 chrX 37618029 37618153 -124981777 - MIR SINE MIR -61 147 63 210 71 0 0 chrX 37618204 37618232 -124981698 + (T)n Simple_repeat Simple_repeat 1 28 0 1016 196 5 11 chrX 37618261 37618450 -124981480 + MER58A DNA MER1_type 37 224 0 299 268 72 31 chrX 37618681 37618778 -124981152 + MIR SINE MIR 151 251 -11 970 266 18 4 chrX 37621097 37621326 -124978604 + MIR SINE MIR 2 233 -29 1768 181 42 13 chrX 37621627 37622008 -124977922 - L1ME1 LINE L1 -5 6161 5770 217 103 0 0 chrX 37622550 37622579 -124977351 - L3 LINE CR1 -1281 296 268 1851 174 0 3 chrX 37623774 37624068 -124975862 - AluJb SINE Alu -19 293 1 2512 273 40 9 chrX 37624294 37625501 -124974429 + L1ME1 LINE L1 41 1333 -5063 2042 197 37 17 chrX 37625539 37626076 -124973854 + L1ME1 LINE L1 1919 2466 -3930 1677 238 4 84 chrX 37626058 37626182 -124973748 + L1ME1 LINE L1 5712 5844 -391 * 19301 34 1 11 chrX 37626182 37629308 -124970622 + L1PA4 LINE L1 3024 6152 -3 1677 238 4 84 chrX 37629308 37629745 -124970185 + L1ME1 LINE L1 5844 6228 -7 438 20 0 0 chrX 37629905 37629956 -124969974 + (CA)n Simple_repeat Simple_repeat 2 52 0 385 270 17 9 chrX 37632175 37632290 -124967640 + MIR SINE MIR 39 154 -108 840 227 25 0 chrX 37632475 37632638 -124967292 + MER5A DNA MER1_type 14 180 -9 1047 336 32 14 chrX 37634619 37635059 -124964871 - HERV16 LTR ERVL -4502 494 47 748 327 33 20 chrX 37635087 37635513 -124964417 - LTR16A LTR ERVL 0 450 1 290 227 67 8 chrX 37635542 37635709 -124964221 + L1M3 LINE L1 5313 5456 -712 2194 127 0 0 chrX 37635718 37636018 -124963912 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 37636024 37636047 -124963883 + AT_rich Low_complexity Low_complexity 1 23 0 1008 254 41 43 chrX 37636173 37636638 -124963292 + L1ME LINE L1 4563 5026 -1120 839 173 101 12 chrX 37636654 37636822 -124963108 + MER3 DNA MER1_type 2 184 -25 338 297 8 23 chrX 37636894 37637022 -124962908 + MLT2F LTR ERVL 16 141 -522 548 140 0 5 chrX 37637031 37637145 -124962785 + MLT1E3 LTR MaLR 51 209 -445 281 254 0 0 chrX 37637153 37637208 -124962722 + Tigger5 DNA MER2_type 1 55 -2268 423 193 45 0 chrX 37637213 37637301 -124962629 + Tigger5 DNA MER2_type 2231 2322 -1 818 233 109 77 chrX 37637612 37638069 -124961861 + L1ME LINE L1 5102 5574 -596 453 19 0 0 chrX 37638080 37638134 -124961796 + (TG)n Simple_repeat Simple_repeat 2 55 0 839 237 14 40 chrX 37638134 37638412 -124961518 - L1M4 LINE L1 -1007 5139 4869 2971 103 9 14 chrX 37639976 37640412 -124959518 - MER57B LTR ERV1 0 434 1 182 299 47 47 chrX 37640587 37640694 -124959236 - MIR SINE MIR -10 252 146 286 277 10 0 chrX 37640892 37640993 -124958937 + L1 LINE L1 3876 3977 -2169 553 256 41 32 chrX 37641108 37641322 -124958608 - MIR SINE MIR -12 250 39 305 309 36 12 chrX 37641345 37641513 -124958417 + L1 LINE L1 4024 4195 -1951 1975 216 45 11 chrX 37641665 37642132 -124957798 - MER90 LTR ERV1 0 575 93 1719 227 139 13 chrX 37642138 37642614 -124957316 - MER34 LTR ERV1 -6 536 1 333 88 275 75 chrX 37642614 37642694 -124957236 - MER90 LTR ERV1 -479 96 1 442 317 31 0 chrX 37642762 37642923 -124957007 + L1ME3A LINE L1 5989 6154 -16 44 20 0 0 chrX 37642925 37642976 -124956954 + AT_rich Low_complexity Low_complexity 1 51 0 588 305 58 74 chrX 37643063 37643214 -124956716 - L2 LINE L2 -1145 2169 2017 2298 214 20 18 chrX 37643214 37643718 -124956212 + MLT1D LTR MaLR 1 505 0 588 305 58 74 chrX 37643718 37643741 -124956189 - L2 LINE L2 -1297 2017 1995 2086 129 7 0 chrX 37643741 37644044 -124955886 - AluSx SINE Alu -2 310 6 588 305 58 74 chrX 37644044 37644232 -124955698 - L2 LINE L2 -1319 1995 1812 195 379 15 0 chrX 37646133 37646199 -124953731 - L2 LINE L2 -5 3308 3242 249 313 84 67 chrX 37646239 37646418 -124953512 + L2 LINE L2 3083 3264 -8 22 0 0 0 chrX 37646445 37646467 -124953463 + AT_rich Low_complexity Low_complexity 1 22 0 2080 109 10 23 chrX 37649304 37649607 -124950323 - AluSg SINE Alu -11 299 1 1306 266 80 39 chrX 37649620 37650108 -124949822 - LTR33 LTR ERVL -13 508 1 331 263 44 9 chrX 37650310 37650424 -124949506 - L1M4 LINE L1 -3792 2852 2735 282 89 44 0 chrX 37651036 37651081 -124948849 + L1P2 LINE L1 5395 5441 -713 386 189 0 0 chrX 37651472 37651546 -124948384 - L1M4 LINE L1 -4590 2056 1983 4239 184 16 8 chrX 37651549 37652372 -124947558 - L1MB8 LINE L1 0 6178 5350 * 6714 217 32 27 chrX 37652369 37652865 -124947065 - L1M4 LINE L1 -4645 2001 1509 1918 181 0 0 chrX 37652865 37653175 -124946755 - AluJb SINE Alu -2 310 1 6714 217 32 27 chrX 37653175 37653805 -124946125 - L1M4 LINE L1 -5137 1509 883 2256 110 3 0 chrX 37653805 37654104 -124945826 + AluSx SINE Alu 1 300 -12 6714 217 32 27 chrX 37654104 37654947 -124944983 - L1M4 LINE L1 -5763 883 10 1111 278 33 36 chrX 37655253 37655491 -124944439 - LTR16C LTR ERVL 0 491 253 1995 121 68 6 chrX 37655491 37655814 -124944116 + MER61A LTR ERV1 1 343 0 1111 278 33 36 chrX 37655814 37655909 -124944021 - LTR16C LTR ERVL -238 253 159 382 297 104 15 chrX 37656051 37656320 -124943610 - HAL1b LINE L1 -570 778 486 1625 194 88 51 chrX 37656394 37656828 -124943102 + MLT1C LTR MaLR 18 467 0 1226 267 5 38 chrX 37657576 37657943 -124941987 + L1MB7 LINE L1 24 378 -6164 8439 231 39 31 chrX 37657952 37660544 -124939386 + L1MB7 LINE L1 3112 5724 -920 5807 111 9 3 chrX 37660545 37661419 -124938511 - Tigger3b DNA MER2_type -7 1224 346 2567 134 47 5 chrX 37661419 37661841 -124938089 + MSTB1 LTR MaLR 1 432 0 1991 160 8 47 chrX 37661842 37662205 -124937725 - Tigger3b DNA MER2_type -882 349 1 3789 184 30 45 chrX 37662227 37663163 -124936767 + L1MB7 LINE L1 5752 6673 -9 212 216 20 0 chrX 37663634 37663685 -124936245 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2433 89 0 0 chrX 37664352 37664665 -124935265 - AluSq SINE Alu 0 313 1 29 28 0 0 chrX 37665183 37665219 -124934711 + AT_rich Low_complexity Low_complexity 1 36 0 2154 114 3 0 chrX 37666677 37666966 -124932964 - AluSx SINE Alu -22 290 1 583 262 138 39 chrX 37666980 37667320 -124932610 + MLT1H LTR MaLR 118 521 -34 4927 41 3 3 chrX 37667320 37667911 -124932019 - LTR10C LTR ERV1 0 591 1 583 262 138 39 chrX 37667911 37667950 -124931980 + MLT1H LTR MaLR 521 555 0 2033 132 0 26 chrX 37668495 37668805 -124931125 - AluSx SINE Alu -10 302 1 541 247 60 27 chrX 37668886 37669036 -124930894 + MIR SINE MIR 26 180 -82 480 262 163 0 chrX 37669117 37669258 -124930672 + MIR3 SINE MIR 42 205 -3 430 109 16 0 chrX 37669962 37670026 -124929904 + MER31B LTR ERV1 3 67 -399 213 94 0 0 chrX 37670052 37670084 -124929846 + (A)n Simple_repeat Simple_repeat 1 32 0 255 170 0 0 chrX 37670087 37670134 -124929796 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1741 158 20 20 chrX 37671078 37671382 -124928548 - AluJo SINE Alu -8 304 1 327 93 0 0 chrX 37671402 37671445 -124928485 - MLT2B1 LTR ERVL 0 553 511 1543 207 43 62 chrX 37671523 37671999 -124927931 - MLT2B1 LTR ERVL -43 472 8 363 316 78 17 chrX 37672027 37672375 -124927555 + HAL1 LINE L1 820 1188 -1319 1702 171 14 10 chrX 37672502 37672795 -124927135 + AluJo SINE Alu 9 302 -10 252 271 39 98 chrX 37673072 37673309 -124926621 - L1ME LINE L1 -239 5882 5657 196 342 0 0 chrX 37674018 37674094 -124925836 - MIR SINE MIR -125 137 62 1507 220 85 11 chrX 37674136 37674499 -124925431 + MLT1B LTR MaLR 1 390 0 205 381 34 8 chrX 37674504 37674622 -124925308 + MIR3 SINE MIR 46 166 -42 25 0 0 0 chrX 37674739 37674764 -124925166 + AT_rich Low_complexity Low_complexity 1 25 0 2014 203 59 25 chrX 37674937 37675410 -124924520 + MLT1D LTR MaLR 1 489 -16 219 381 39 7 chrX 37675793 37675948 -124923982 - L2 LINE L2 -383 2931 2772 1074 241 80 62 chrX 37676235 37676720 -124923210 + PABL_B LTR ERV1 174 667 0 729 249 68 110 chrX 37676726 37677227 -124922703 - L2 LINE L2 -564 2750 2271 217 159 23 0 chrX 37677397 37677441 -124922489 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 322 294 85 55 chrX 37678247 37678466 -124921464 - MIR SINE MIR 0 262 21 396 0 0 0 chrX 37678955 37678999 -124920931 + (TG)n Simple_repeat Simple_repeat 1 44 0 4072 117 19 51 chrX 37678999 37679682 -124920248 + LTR8 LTR ERV1 31 691 0 1540 162 23 118 chrX 37679776 37680257 -124919673 - LTR49 LTR ERV1 -160 435 1 2191 112 0 3 chrX 37680309 37680612 -124919318 + AluSx SINE Alu 1 302 -10 438 252 37 44 chrX 37680941 37681076 -124918854 - L2 LINE L2 0 3313 3180 4321 155 100 53 chrX 37682175 37683083 -124916847 + LTR28 LTR ERV1 1 951 -69 379 274 73 31 chrX 37683255 37683514 -124916416 - L1M4 LINE L1 -1487 4659 4390 25 31 0 0 chrX 37683719 37683751 -124916179 + AT_rich Low_complexity Low_complexity 1 32 0 357 246 85 23 chrX 37683919 37684049 -124915881 + L1ME2 LINE L1 5304 5441 -2367 25 75 0 0 chrX 37684049 37684102 -124915828 + AT_rich Low_complexity Low_complexity 1 53 0 1336 158 187 45 chrX 37684105 37684479 -124915451 + LTR49 LTR ERV1 9 435 -160 36082 89 11 29 chrX 37684493 37690704 -124909226 + L1PA6 LINE L1 11 6150 -4 2355 90 0 0 chrX 37690729 37691028 -124908902 - AluY SINE Alu -12 299 1 666 175 50 19 chrX 37691028 37691188 -124908742 + LTR48 LTR ERV1 623 787 0 5074 186 94 128 chrX 37691190 37692325 -124907605 + LTR48-int LTR ERV1 1 1173 -3763 354 219 14 14 chrX 37692325 37692398 -124907532 + tRNA-Glu-GAG tRNA tRNA 3 75 0 5074 186 94 128 chrX 37692398 37692982 -124906948 + LTR48-int LTR ERV1 1173 357 -4579 2004 157 0 0 chrX 37692982 37693294 -124906636 - AluSx SINE Alu 0 312 1 5074 186 94 128 chrX 37693294 37693538 -124906392 + LTR48-int LTR ERV1 356 607 -4329 6667 163 20 6 chrX 37693679 37695931 -124903999 + L1PB1 LINE L1 3868 6151 0 1179 170 37 0 chrX 37695954 37696195 -124903735 + L1ME2 LINE L1 5691 5940 -224 396 236 193 19 chrX 37696291 37696427 -124903503 + L1ME2 LINE L1 5937 6106 -58 2258 105 3 0 chrX 37696427 37696723 -124903207 + AluSp SINE Alu 1 297 -16 396 236 193 19 chrX 37696723 37696747 -124903183 + L1ME2 LINE L1 6106 6125 -39 336 24 0 0 chrX 37696747 37696788 -124903142 + (TG)n Simple_repeat Simple_repeat 1 41 0 2867 94 29 0 chrX 37696810 37697223 -124902707 + L1PA13 LINE L1 5719 6143 -20 475 170 228 18 chrX 37697268 37697439 -124902491 - Charlie1 DNA MER1_type -112 2649 2443 22 35 0 0 chrX 37697817 37697846 -124902084 + AT_rich Low_complexity Low_complexity 1 29 0 711 248 0 7 chrX 37698656 37698809 -124901121 - FRAM SINE Alu -23 153 2 206 340 32 21 chrX 37699119 37699213 -124900717 + MIR SINE MIR 168 262 0 227 325 0 0 chrX 37699238 37699318 -124900612 - MIR SINE MIR -108 154 75 261 201 291 15 chrX 37699604 37699738 -124900192 - MIR3 SINE MIR -10 198 28 29 47 0 0 chrX 37699846 37699889 -124900041 + AT_rich Low_complexity Low_complexity 1 43 0 446 325 121 51 chrX 37699930 37700314 -124899616 - L1MD2 LINE L1 -296 5825 5527 1399 164 174 0 chrX 37700314 37700607 -124899323 + MER2 DNA MER2_type 1 344 0 446 325 121 51 chrX 37700607 37700898 -124899032 - L1MD2 LINE L1 -594 5527 5258 229 128 35 23 chrX 37701196 37701282 -124898648 + (TA)n Simple_repeat Simple_repeat 2 88 0 26 50 0 0 chrX 37701527 37701567 -124898363 + AT_rich Low_complexity Low_complexity 1 40 0 192 254 0 0 chrX 37701954 37702013 -124897917 + (TATG)n Simple_repeat Simple_repeat 2 60 0 388 327 115 10 chrX 37702139 37702530 -124897400 + L1ME LINE L1 5379 5810 -311 239 242 0 0 chrX 37702543 37702609 -124897321 + (TA)n Simple_repeat Simple_repeat 1 66 0 3940 196 56 81 chrX 37702773 37703895 -124896035 + L1MB7 LINE L1 3 1096 -5446 633 299 49 7 chrX 37703902 37704210 -124895720 + L1MB7 LINE L1 3600 3920 -2724 1373 234 113 85 chrX 37704212 37704728 -124895202 - MER39 LTR ERV1 0 707 7 6247 196 52 44 chrX 37704733 37706385 -124893545 + L1MB7 LINE L1 3918 5582 -1062 1880 189 35 27 chrX 37706385 37706787 -124893143 - MLT1B LTR MaLR 0 426 1 2245 189 48 22 chrX 37706876 37707373 -124892557 + L1MB7 LINE L1 6160 6669 -13 21 0 0 0 chrX 37707568 37707589 -124892341 + AT_rich Low_complexity Low_complexity 1 21 0 1191 208 11 30 chrX 37707708 37707973 -124891957 - MLT2B1 LTR ERVL 0 520 261 414 341 58 13 chrX 37708217 37708525 -124891405 - L1MD2 LINE L1 -1100 5046 4725 2198 108 0 3 chrX 37708606 37708901 -124891029 - AluSq SINE Alu -19 294 1 729 197 0 0 chrX 37709007 37709129 -124890801 + FLAM_A SINE Alu 1 122 -11 22 0 0 0 chrX 37709234 37709256 -124890674 + AT_rich Low_complexity Low_complexity 1 22 0 7226 39 0 4 chrX 37709427 37710413 -124889517 - L1PA5 LINE L1 -9 6145 5158 26 0 0 0 chrX 37710462 37710488 -124889442 + AT_rich Low_complexity Low_complexity 1 26 0 359 265 68 74 chrX 37710645 37711056 -124888874 + HAL1b LINE L1 1193 1326 -22 23 0 0 0 chrX 37711253 37711276 -124888654 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 37711295 37711316 -124888614 + AT_rich Low_complexity Low_complexity 1 21 0 1169 140 0 0 chrX 37761428 37761599 -124838331 + AluSg/x SINE Alu 131 301 -11 2174 104 13 7 chrX 37761603 37761901 -124838029 + AluSp SINE Alu 1 300 -13 772 246 88 126 chrX 37762171 37762293 -124837637 - MLT1J LTR MaLR 0 511 386 2474 64 7 0 chrX 37762293 37762589 -124837341 + AluY SINE Alu 1 298 -13 772 246 88 126 chrX 37762589 37762991 -124836939 - MLT1J LTR MaLR -125 386 7 351 210 57 89 chrX 37763189 37763346 -124836584 - MIR SINE MIR -41 221 70 1066 165 21 16 chrX 37764032 37764220 -124835710 + MER5A DNA MER1_type 1 189 0 412 321 6 30 chrX 37765311 37765479 -124834451 + MIR3 SINE MIR 15 178 -30 250 286 32 63 chrX 37765521 37765647 -124834283 + LTR16C LTR ERVL 188 309 -182 180 97 0 0 chrX 37765769 37765800 -124834130 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2208 102 0 0 chrX 37765802 37766085 -124833845 - AluSx SINE Alu -29 283 1 1106 242 25 43 chrX 37766430 37766752 -124833178 + LTR16C LTR ERVL 161 476 -15 1450 166 22 27 chrX 37767442 37767747 -124832183 + MER61B LTR ERV1 1 396 -28 3268 128 29 37 chrX 37767756 37768114 -124831816 + MER61B-int LTR ERV1 1 360 -4857 2170 130 0 3 chrX 37768114 37768413 -124831517 - AluSx SINE Alu -14 298 1 3268 128 29 37 chrX 37768413 37768818 -124831112 + MER61B-int LTR ERV1 360 840 -4377 28832 81 13 7 chrX 37768818 37768896 -124831034 + MER61B-int LTR ERV1 958 1034 -4183 2424 86 0 0 chrX 37768896 37769197 -124830733 - AluY SINE Alu -10 301 1 28832 81 13 7 chrX 37769197 37773311 -124826619 + MER61B-int LTR ERV1 1034 5217 0 1493 158 28 12 chrX 37773311 37773610 -124826320 + MER61B LTR ERV1 1 396 -28 2604 83 26 9 chrX 37773652 37774001 -124825929 + THE1A LTR MaLR 1 355 0 278 212 10 131 chrX 37775398 37775497 -124824433 - L2 LINE L2 -2 3311 3225 1743 216 41 51 chrX 37775504 37775874 -124824056 - MER31A LTR ERV1 0 485 120 5385 78 5 6 chrX 37775874 37776542 -124823388 + PABL_B LTR ERV1 1 667 0 1743 216 41 51 chrX 37776542 37776661 -124823269 - MER31A LTR ERV1 -365 120 1 27101 108 47 53 chrX 37776695 37777564 -124822366 - MER31A-int LTR ERV1 -151 4785 3912 2486 182 57 51 chrX 37777564 37778028 -124821902 + MLT2B2 LTR ERVL 3 472 -43 369 0 0 0 chrX 37778028 37778069 -124821861 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 2486 182 57 51 chrX 37778069 37778114 -124821816 + MLT2B2 LTR ERVL 472 515 0 27101 108 47 53 chrX 37778114 37781037 -124818893 - MER31A-int LTR ERV1 -1024 3912 1022 1135 87 0 7 chrX 37781037 37781186 -124818744 + L1PA10 LINE L1 6019 6166 -2 27101 108 47 53 chrX 37781186 37782004 -124817926 - MER31A-int LTR ERV1 -3914 1022 201 372 173 0 53 chrX 37782063 37782138 -124817792 - MER31A-int LTR ERV1 -4669 267 197 436 145 0 0 chrX 37782145 37782214 -124817716 - Alu SINE Alu 0 312 244 1361 39 0 0 chrX 37782276 37782432 -124817498 - MER31A-int LTR ERV1 -4763 173 18 1626 190 138 41 chrX 37782485 37782927 -124817003 - MER31A LTR ERV1 0 485 1 198 0 0 0 chrX 37783132 37783154 -124816776 + (A)n Simple_repeat Simple_repeat 1 22 0 214 342 136 41 chrX 37783154 37783663 -124816267 - L2 LINE L2 -375 2939 2383 317 259 129 0 chrX 37783767 37783883 -124816047 + MER112 DNA MER1_type 3 133 -127 417 396 0 0 chrX 37783950 37784109 -124815821 + (CGG)n Simple_repeat Simple_repeat 2 160 0 210 139 0 0 chrX 37786490 37786526 -124813404 + (TG)n Simple_repeat Simple_repeat 1 36 0 28 0 0 0 chrX 37787238 37787266 -124812664 + AT_rich Low_complexity Low_complexity 1 28 0 279 274 48 65 chrX 37787624 37787748 -124812182 - L2 LINE L2 -556 2758 2637 818 203 0 59 chrX 37787860 37788022 -124811908 + MER5A DNA MER1_type 14 165 -24 2314 103 0 0 chrX 37788022 37788323 -124811607 - AluSx SINE Alu -11 301 1 818 203 0 59 chrX 37788323 37788347 -124811583 + MER5A DNA MER1_type 165 189 0 321 26 0 0 chrX 37788408 37788446 -124811484 + (TG)n Simple_repeat Simple_repeat 1 38 0 574 316 68 24 chrX 37788837 37789087 -124810843 + MIR SINE MIR 2 262 0 222 316 133 20 chrX 37789157 37789255 -124810675 + L2 LINE L2 3137 3245 -27 296 286 0 13 chrX 37789775 37789852 -124810078 - MIR3 SINE MIR -5 203 128 512 246 56 7 chrX 37790282 37790424 -124809506 + MIR SINE MIR 110 258 -4 5359 70 17 6 chrX 37790578 37791235 -124808695 + PABL_B LTR ERV1 4 667 0 3316 113 36 2 chrX 37791340 37791810 -124808120 - LTR19A LTR ERV1 0 486 1 59953 73 6 10 chrX 37791810 37799257 -124800673 - HERVFH19I LTR ERV1 0 7719 304 252 0 0 0 chrX 37799257 37799285 -124800645 + (GA)n Simple_repeat Simple_repeat 1 28 0 59953 73 6 10 chrX 37799285 37799588 -124800342 - HERVFH19I LTR ERV1 -7415 304 1 3487 96 36 2 chrX 37799588 37800058 -124799872 - LTR19A LTR ERV1 0 486 1 1580 234 22 25 chrX 37800058 37800464 -124799466 + LTR16A LTR ERVL 28 444 -6 24 0 0 0 chrX 37801501 37801525 -124798405 + AT_rich Low_complexity Low_complexity 1 24 0 203 345 74 34 chrX 37802222 37802370 -124797560 + MIR SINE MIR 1 154 -108 434 262 133 52 chrX 37802390 37802623 -124797307 - MIR SINE MIR 0 262 11 722 303 123 24 chrX 37803813 37804575 -124795355 + HAL1 LINE L1 971 1808 -699 201 39 0 0 chrX 37805235 37805261 -124794669 + (CA)n Simple_repeat Simple_repeat 2 27 0 257 192 55 0 chrX 37807334 37807407 -124792523 + LTR16A1 LTR ERVL 49 125 -332 803 268 0 0 chrX 37807442 37807632 -124792298 - MER58A DNA MER1_type -16 208 19 868 275 27 45 chrX 37807641 37807972 -124791958 + LTR16A LTR ERVL 120 444 -6 224 146 0 21 chrX 37808343 37808391 -124791539 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1514 261 29 11 chrX 37809383 37809832 -124790098 - LTR16C LTR ERVL -34 457 1 2313 96 3 0 chrX 37809878 37810170 -124789760 - AluSx SINE Alu -19 293 1 1110 237 137 34 chrX 37810221 37810731 -124789199 + MLT1F1 LTR MaLR 1 564 -3 1689 54 19 0 chrX 37810826 37811031 -124788899 + AluY SINE Alu 83 291 -20 1075 239 61 18 chrX 37811430 37811687 -124788243 + MER2 DNA MER2_type 1 277 -68 5225 91 9 4 chrX 37811687 37812458 -124787472 - L1MA2 LINE L1 0 6304 5530 1075 239 61 18 chrX 37812458 37812530 -124787400 + MER2 DNA MER2_type 277 344 -1 2563 145 34 2 chrX 37813850 37814263 -124785667 - MSTB LTR MaLR 0 426 1 1159 259 58 48 chrX 37814449 37814846 -124785084 - L2 LINE L2 -1 3312 2912 1717 156 0 79 chrX 37815998 37816326 -124783604 - AluSq SINE Alu -11 302 1 902 241 71 5 chrX 37816781 37817005 -124782925 + MIR SINE MIR 3 241 -21 1187 309 16 14 chrX 37817476 37817910 -124782020 + LTR16A LTR ERVL 16 450 0 569 228 82 16 chrX 37819474 37819674 -124780256 + MLT1H1 LTR MaLR 304 555 0 568 274 116 0 chrX 37819746 37819910 -124780020 + MIR SINE MIR 29 211 -51 425 313 28 0 chrX 37820064 37820208 -124779722 + MIR SINE MIR 106 253 -9 489 326 4 19 chrX 37821421 37821685 -124778245 - MIR SINE MIR -1 261 2 1987 143 0 3 chrX 37821966 37822259 -124777671 - AluSp SINE Alu -8 305 14 1497 188 133 86 chrX 37822291 37822823 -124777107 + MLT1F1 LTR MaLR 12 567 0 21 36 0 0 chrX 37823798 37823826 -124776104 + AT_rich Low_complexity Low_complexity 1 28 0 5871 98 16 0 chrX 37823826 37824750 -124775180 - L1PA15 LINE L1 0 6165 5213 417 256 65 36 chrX 37824761 37824929 -124775001 - MER5A DNA MER1_type -6 183 11 233 313 0 0 chrX 37825164 37825231 -124774699 + L2 LINE L2 3204 3270 -2 467 217 174 0 chrX 37826612 37826657 -124773273 - L1MA10 LINE L1 -3 6331 6287 3512 218 69 21 chrX 37826657 37828362 -124771568 - L1ME1 LINE L1 -44 6191 4407 1582 191 188 0 chrX 37828362 37828713 -124771217 - MER47B DNA MER2_type 0 418 2 1082 247 6 18 chrX 37828714 37829046 -124770884 - L1ME1 LINE L1 -1807 4408 4081 1743 196 7 0 chrX 37829113 37829414 -124770516 + AluJo SINE Alu 1 303 -9 1342 224 105 63 chrX 37829428 37829879 -124770051 - MLT1E LTR MaLR -24 551 91 2128 110 40 0 chrX 37829879 37830179 -124769751 + AluSx SINE Alu 1 312 0 1342 224 105 63 chrX 37830179 37830274 -124769656 - MLT1E LTR MaLR -484 91 1 6289 244 49 44 chrX 37830274 37831482 -124768448 - L1ME1 LINE L1 -2139 4076 2875 2853 10 0 0 chrX 37831482 37831793 -124768137 - AluYa5 SINE Alu 0 311 1 6289 244 49 44 chrX 37831793 37832100 -124767830 - L1ME1 LINE L1 -3340 2875 2571 2112 112 0 14 chrX 37832100 37832415 -124767515 + AluSx SINE Alu 1 311 0 6289 244 49 44 chrX 37832415 37834236 -124765694 - L1ME1 LINE L1 -3644 2571 763 2871 70 8 3 chrX 37834236 37834619 -124765311 - L1PA13 LINE L1 -11 6152 5768 6289 244 49 44 chrX 37834619 37835350 -124764580 - L1ME1 LINE L1 -5452 763 37 1654 184 93 37 chrX 37835785 37836160 -124763770 - MSTD LTR MaLR 0 396 1 22 88 0 0 chrX 37837196 37837253 -124762677 + AT_rich Low_complexity Low_complexity 1 57 0 553 292 74 20 chrX 37837343 37837733 -124762197 - L1ME4a LINE L1 -175 5946 5536 882 259 131 40 chrX 37838582 37838659 -124761271 + MLT1H LTR MaLR 1 70 -479 17510 44 2 0 chrX 37838659 37841599 -124758331 + L1PA5 LINE L1 3210 6152 -2 882 259 131 40 chrX 37841599 37841926 -124758004 + MLT1H LTR MaLR 70 442 -107 21 36 0 0 chrX 37843101 37843129 -124756801 + AT_rich Low_complexity Low_complexity 1 28 0 1615 142 98 41 chrX 37843188 37843506 -124756424 - MER1B DNA MER1_type -1 336 1 184 320 0 0 chrX 37843681 37843731 -124756199 + L2 LINE L2 3208 3257 -15 207 0 0 0 chrX 37844557 37844580 -124755350 + (TC)n Simple_repeat Simple_repeat 2 24 0 219 36 0 0 chrX 37844582 37844610 -124755320 + (CA)n Simple_repeat Simple_repeat 1 28 0 288 339 149 33 chrX 37845621 37845863 -124754067 - L2 LINE L2 -2 3270 3001 207 0 0 0 chrX 37847404 37847427 -124752503 + (A)n Simple_repeat Simple_repeat 1 23 0 407 347 20 7 chrX 37847528 37847678 -124752252 - L3 LINE CR1 -10 1567 1416 193 313 75 68 chrX 37847740 37848005 -124751925 + L2 LINE L2 2709 2975 -339 308 186 114 0 chrX 37848131 37848201 -124751729 + L2 LINE L2 3236 3313 0 446 256 169 5 chrX 37848324 37848627 -124751303 - LTR33 LTR ERVL -12 509 110 1229 334 55 28 chrX 37848708 37849325 -124750605 - L3 LINE CR1 -344 1233 600 315 226 21 21 chrX 37849424 37849517 -124750413 + MER103 DNA DNA 1 93 -73 588 275 65 44 chrX 37849659 37849888 -124750042 + MIR SINE MIR 29 262 0 308 300 27 18 chrX 37850075 37850185 -124749745 + L1ME LINE L1 5276 5386 -856 535 303 6 12 chrX 37850301 37850463 -124749467 - MIR SINE MIR -1 261 101 296 235 15 0 chrX 37850477 37850545 -124749385 + L1ME LINE L1 5557 5625 -496 1171 277 73 15 chrX 37850561 37850972 -124748958 + LTR16A LTR ERVL 16 450 0 544 263 67 50 chrX 37851115 37851473 -124748457 + L1MCc LINE L1 21 384 -6039 1578 243 57 21 chrX 37851598 37852546 -124747384 + L1MCc LINE L1 814 1910 -4851 745 261 70 7 chrX 37852559 37852846 -124747084 - MLT1D LTR MaLR -2 503 199 1083 256 46 46 chrX 37852855 37853386 -124746544 + L1MCc LINE L1 2658 3188 -3753 2404 92 0 13 chrX 37853386 37853701 -124746229 + AluSq SINE Alu 1 311 -2 1083 256 46 46 chrX 37853701 37853774 -124746156 + L1MCc LINE L1 3188 3260 -3681 1977 172 42 3 chrX 37853774 37854129 -124745801 + MER93b LTR ERV1 5 373 0 1083 256 46 46 chrX 37854129 37854239 -124745691 + L1MCc LINE L1 3260 3336 -3605 998 205 80 86 chrX 37854244 37854630 -124745300 + L1MD3 LINE L1 6801 7184 -811 566 240 0 0 chrX 37854645 37854770 -124745160 + MLT1F1 LTR MaLR 1 125 -442 2899 173 39 2 chrX 37854771 37855332 -124744598 + L1MD3 LINE L1 7400 7981 -14 2082 93 23 33 chrX 37855334 37855634 -124744296 - AluY SINE Alu -14 297 1 283 250 42 10 chrX 37855672 37855768 -124744162 + MLT1J2 LTR MaLR 344 442 -8 27 49 0 0 chrX 37855950 37855991 -124743939 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 37856636 37856658 -124743272 + AT_rich Low_complexity Low_complexity 1 22 0 275 289 58 10 chrX 37856705 37856809 -124743121 - MIR SINE MIR -141 121 13 21 0 0 0 chrX 37856999 37857020 -124742910 + AT_rich Low_complexity Low_complexity 1 21 0 567 289 102 49 chrX 37857073 37857319 -124742611 - MIR SINE MIR -2 260 2 904 252 29 0 chrX 37858195 37858405 -124741525 + MIR SINE MIR 43 258 -4 1893 146 7 3 chrX 37858678 37858966 -124740964 + AluJb SINE Alu 1 289 -23 225 308 0 26 chrX 37859043 37859121 -124740809 - L2 LINE L2 -61 3252 3177 555 268 252 4 chrX 37859129 37859383 -124740547 + L2 LINE L2 2827 3143 -170 3630 259 40 14 chrX 37859410 37860379 -124739551 - L2 LINE L2 -508 2806 1813 1178 281 97 21 chrX 37860379 37860814 -124739116 - L2 LINE L2 -2846 468 1 797 167 0 8 chrX 37861174 37861300 -124738630 - FLAM_A SINE Alu -8 125 1 186 133 0 0 chrX 37862001 37862031 -124737899 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1199 235 55 48 chrX 37862322 37862756 -124737174 - MLT1J1 LTR MaLR -2 444 8 233 155 17 0 chrX 37864087 37864145 -124735785 + GA-rich Low_complexity Low_complexity 2 60 0 252 0 0 0 chrX 37865491 37865519 -124734411 + (T)n Simple_repeat Simple_repeat 1 28 0 1179 306 47 10 chrX 37866199 37866604 -124733326 + LTR16C LTR ERVL 71 490 -1 537 252 96 28 chrX 37866996 37867291 -124732639 + LTR33 LTR ERVL 173 521 0 369 277 6 77 chrX 37867291 37867469 -124732461 + MIR SINE MIR 25 189 -73 1207 176 0 0 chrX 37867884 37868072 -124731858 + MER5A DNA MER1_type 2 189 0 1219 228 42 9 chrX 37868244 37868678 -124731252 - MLT1E LTR MaLR 0 593 50 1211 222 51 28 chrX 37868844 37869300 -124730630 - MLT1E-int LTR MaLR -766 605 15 979 251 70 0 chrX 37869334 37869577 -124730353 - MLT1E LTR MaLR 0 593 334 926 259 56 0 chrX 37869585 37869801 -124730129 - MLT1E LTR MaLR -365 228 1 406 355 35 12 chrX 37870214 37870386 -124729544 + MER5B DNA MER1_type 1 176 -2 320 152 15 0 chrX 37870588 37870654 -124729276 + CT-rich Low_complexity Low_complexity 3 69 0 1673 203 42 97 chrX 37871421 37872025 -124727905 - L1ME1 LINE L1 -7 6228 5661 4843 104 5 36 chrX 37872025 37872778 -124727152 + L1PB3 LINE L1 5420 6149 -5 1673 203 42 97 chrX 37872778 37872834 -124727096 - L1ME1 LINE L1 -574 5661 5604 346 273 34 0 chrX 37872837 37872925 -124727005 + L1MC4 LINE L1 6612 6702 -1340 293 0 27 0 chrX 37872945 37872982 -124726948 + (GA)n Simple_repeat Simple_repeat 2 39 0 1667 156 0 56 chrX 37873008 37873296 -124726634 - AluJo SINE Alu -40 272 1 370 176 8 131 chrX 37873298 37873438 -124726492 - L1ME1 LINE L1 -682 5553 5437 1260 204 70 77 chrX 37873438 37874011 -124725919 - L1ME1 LINE L1 -2539 3676 3108 1024 262 0 7 chrX 37874010 37874285 -124725645 - L1ME1 LINE L1 -6086 310 38 * 408 245 86 36 chrX 37874596 37874735 -124725195 - MLT1J LTR MaLR -110 401 256 312 70 0 0 chrX 37875390 37875433 -124724497 + (TC)n Simple_repeat Simple_repeat 1 43 0 299 256 42 3 chrX 37875759 37875871 -124724059 + MIR SINE MIR 37 157 -63 214 331 45 11 chrX 37875912 37876028 -124723902 + MIR SINE MIR 10 137 -71 194 250 0 91 chrX 37876009 37876097 -124723833 + L2 LINE L2 3229 3308 -5 * 309 26 0 0 chrX 37877114 37877152 -124722778 + (TA)n Simple_repeat Simple_repeat 1 38 0 252 0 0 0 chrX 37877151 37877179 -124722751 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 583 262 73 31 chrX 37877607 37877875 -124722055 + MLT1H LTR MaLR 14 333 -216 342 189 31 1 chrX 37877951 37878039 -124721891 + MLT1F LTR MaLR 453 531 -11 987 243 67 80 chrX 37878300 37878826 -124721104 + LTR33 LTR ERVL 3 521 0 277 195 115 23 chrX 37879069 37879156 -124720774 + MIR SINE MIR 149 243 -19 592 133 0 0 chrX 37880023 37880113 -124719817 + MER39 LTR ERV1 1 90 -617 1378 155 34 21 chrX 37880144 37880540 -124719390 + LTR32 LTR ERVL 14 471 0 2589 118 12 16 chrX 37880541 37880965 -124718965 + MER39 LTR ERV1 286 707 0 1399 198 136 9 chrX 37882705 37883155 -124716775 - MER69 DNA AcHobo -10 2516 2010 703 273 115 18 chrX 37883140 37883418 -124716512 - MER69 DNA AcHobo -1944 582 278 * 1176 216 100 43 chrX 37883418 37883583 -124716347 + MLT1D LTR MaLR 1 155 -350 2431 80 3 0 chrX 37883583 37883882 -124716048 - AluSp SINE Alu -13 300 1 1176 216 100 43 chrX 37883882 37884087 -124715843 + MLT1D LTR MaLR 155 392 -113 362 292 10 10 chrX 37884099 37884195 -124715735 - MIR SINE MIR -75 133 38 222 400 35 9 chrX 37884773 37884888 -124715042 + L2 LINE L2 3136 3253 -19 255 322 84 42 chrX 37884894 37885037 -124714893 + MIR SINE MIR 20 168 -94 833 289 44 4 chrX 37885712 37886158 -124713772 + L1MDb LINE L1 7 549 -5860 2214 216 40 12 chrX 37886159 37886780 -124713150 + L1MD2 LINE L1 5620 6242 0 404 266 0 71 chrX 37887394 37887499 -124712431 + MIR SINE MIR 119 211 -51 1883 163 47 24 chrX 37887499 37887880 -124712050 + MLT1B LTR MaLR 1 390 0 404 266 0 71 chrX 37887880 37887928 -124712002 + MIR SINE MIR 211 261 -1 1784 192 21 0 chrX 37888802 37889135 -124710795 - MER58B DNA MER1_type -1 340 1 783 293 98 0 chrX 37889387 37889633 -124710297 + L2 LINE L2 2510 2779 -535 1478 270 23 3 chrX 37889672 37890061 -124709869 - LTR16A LTR ERVL -38 412 16 1343 265 58 44 chrX 37890076 37890238 -124709692 + L2 LINE L2 2828 2986 -327 2562 70 0 0 chrX 37890238 37890540 -124709390 - AluY SINE Alu -9 302 1 1343 265 58 44 chrX 37890540 37890856 -124709074 + L2 LINE L2 2986 3313 0 289 193 0 18 chrX 37892111 37892168 -124707762 - LTR67 LTR ERVL -400 157 102 226 298 106 0 chrX 37892345 37892439 -124707491 - L2 LINE L2 0 3272 3169 218 365 0 0 chrX 37893052 37893137 -124706793 - MIR SINE MIR -92 170 86 286 292 28 0 chrX 37893435 37893507 -124706423 + (CATG)n Simple_repeat Simple_repeat 1 74 0 2896 143 0 19 chrX 37893694 37894175 -124705755 - L1PA16 LINE L1 -6 6160 5689 21 0 0 0 chrX 37894496 37894517 -124705413 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 0 0 chrX 37894842 37894889 -124705041 + L2 LINE L2 3138 3184 -88 425 253 65 85 chrX 37895899 37896350 -124703580 - MLT1H LTR MaLR 0 595 114 256 273 20 50 chrX 37896597 37896696 -124703234 + MIR SINE MIR 83 178 -84 1121 165 21 59 chrX 38097583 38097762 -124502168 + MLT2B3 LTR ERVL 328 497 -57 216 0 0 0 chrX 38097762 38097786 -124502144 + (TC)n Simple_repeat Simple_repeat 2 25 0 1121 165 21 59 chrX 38097786 38097842 -124502088 + MLT2B3 LTR ERVL 497 554 0 22 0 0 0 chrX 38097951 38097973 -124501957 + AT_rich Low_complexity Low_complexity 1 22 0 650 320 76 25 chrX 38098021 38098455 -124501475 - L1M4 LINE L1 -1313 4833 4378 289 288 68 46 chrX 38098781 38099132 -124500798 - L1M4 LINE L1 -2193 3953 3595 806 169 114 45 chrX 38099529 38099730 -124500200 + AluJb SINE Alu 87 301 -11 523 286 33 24 chrX 38099731 38099944 -124499986 - LTR16A1 LTR ERVL -86 371 157 2854 179 42 31 chrX 38100079 38100131 -124499799 - MLT2B3 LTR ERVL 0 554 504 231 36 0 0 chrX 38100131 38100159 -124499771 + (GA)n Simple_repeat Simple_repeat 2 29 0 2854 179 42 31 chrX 38100159 38100653 -124499277 - MLT2B3 LTR ERVL -50 504 2 225 0 0 0 chrX 38101069 38101094 -124498836 + (TC)n Simple_repeat Simple_repeat 1 25 0 933 215 188 27 chrX 38101104 38101402 -124498528 + MLT1G3 LTR MaLR 170 515 -15 * 1314 181 26 26 chrX 38101398 38101664 -124498266 - MSTD LTR MaLR -128 268 3 2453 78 0 3 chrX 38101694 38102002 -124497928 + AluY SINE Alu 1 307 -4 21 0 0 0 chrX 38102175 38102196 -124497734 + AT_rich Low_complexity Low_complexity 1 21 0 493 282 81 35 chrX 38102264 38102633 -124497297 + L1ME4a LINE L1 5391 5776 -345 6101 36 0 1 chrX 38102721 38103479 -124496451 - L1PA5 LINE L1 -6 6148 5392 327 223 165 33 chrX 38103510 38103783 -124496147 + L1ME4a LINE L1 5808 6116 -5 358 200 15 0 chrX 38104303 38104368 -124495562 - L2 LINE L2 0 3313 3248 2193 131 78 0 chrX 38104435 38104795 -124495135 + MLT1B LTR MaLR 3 390 0 1851 133 29 48 chrX 38105154 38105530 -124494400 - THE1C LTR MaLR 0 375 7 31 0 0 0 chrX 38105889 38105920 -124494010 + AT_rich Low_complexity Low_complexity 1 31 0 20087 163 26 18 chrX 38106329 38107979 -124491951 - L1 LINE L1 -2363 5202 3567 318 87 0 0 chrX 38107979 38108025 -124491905 + (TG)n Simple_repeat Simple_repeat 1 46 0 20087 163 26 18 chrX 38108025 38108547 -124491383 - L1 LINE L1 -3998 3567 3051 2510 61 0 0 chrX 38108547 38108843 -124491087 - AluY SINE Alu -15 296 1 20087 163 26 18 chrX 38108843 38109603 -124490327 - L1 LINE L1 -4514 3051 2299 2428 85 0 0 chrX 38109603 38109908 -124490022 - AluSg SINE Alu -5 305 1 20087 163 26 18 chrX 38109908 38112103 -124487827 - L1 LINE L1 -5266 2299 25 522 264 7 14 chrX 38112486 38112634 -124487296 - L2 LINE L2 0 3313 3167 2856 135 74 2 chrX 38112850 38113361 -124486569 - MER34B LTR ERV1 0 565 18 434 327 165 26 chrX 38113363 38113944 -124485986 - L2 LINE L2 -943 2371 1710 2528 51 0 0 chrX 38114377 38114673 -124485257 + AluY SINE Alu 1 296 -15 3879 97 2 5 chrX 38114749 38115305 -124484625 - MER41A LTR ERV1 0 554 1 2356 79 10 0 chrX 38115337 38115642 -124484288 + AluY SINE Alu 1 308 -3 273 219 26 97 chrX 38115684 38115798 -124484132 + L2 LINE L2 2391 2496 -818 747 308 74 27 chrX 38115835 38116134 -124483796 + L2 LINE L2 2484 2796 -518 3020 190 80 3 chrX 38116135 38116809 -124483121 - LTR48 LTR ERV1 0 787 62 718 155 11 33 chrX 38116811 38116992 -124482938 + CT-rich Low_complexity Low_complexity 3 179 0 1595 90 35 4 chrX 38117002 38117257 -124482673 - LTR48-int LTR ERV1 -251 4764 4502 * 6556 89 42 32 chrX 38117253 38118363 -124481567 - MER4A-int LTR ERV1 -1641 4957 3837 3521 129 119 39 chrX 38118362 38119011 -124480919 - MER4A-int LTR ERV1 -2917 3681 2941 * 2425 39 0 0 chrX 38119011 38119346 -124480584 + AluY SINE Alu 1 335 0 3521 129 119 39 chrX 38119346 38119569 -124480361 - MER4A-int LTR ERV1 -3657 2941 2737 1302 146 75 0 chrX 38119569 38119808 -124480122 + LTR8 LTR ERV1 1 257 -434 4171 86 53 9 chrX 38119808 38120509 -124479421 - MER4A-int LTR ERV1 -4103 2495 1764 5576 106 72 23 chrX 38120531 38121001 -124478929 - MER4A-int LTR ERV1 -5600 1158 713 2311 112 77 26 chrX 38121001 38121429 -124478501 + LTR7 LTR ERV1 1 450 0 5576 106 72 23 chrX 38121429 38121537 -124478393 - MER4A-int LTR ERV1 -6045 713 612 2492 63 7 0 chrX 38121537 38121838 -124478092 - AluY SINE Alu -8 303 1 5576 106 72 23 chrX 38121838 38122174 -124477756 - MER4A-int LTR ERV1 -6146 612 198 1350 226 39 7 chrX 38122235 38122540 -124477390 - MER4A-int LTR ERV1 -4163 2168 1854 189 0 0 0 chrX 38122588 38122609 -124477321 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2608 81 149 14 chrX 38122690 38123238 -124476692 - MER4A-int LTR ERV1 -5912 686 1 1715 93 160 83 chrX 38123241 38123616 -124476314 - MER4A LTR ERV1 0 664 261 568 141 0 10 chrX 38123616 38123715 -124476215 - MER4A LTR ERV1 -566 98 1 488 285 106 0 chrX 38123728 38123851 -124476079 + L2 LINE L2 3136 3271 -1 725 207 110 35 chrX 38123983 38124210 -124475720 + L1ME3A LINE L1 5925 6168 -2 186 313 100 56 chrX 38124454 38124614 -124475316 - MIR SINE MIR -63 199 33 602 284 70 87 chrX 38125517 38125962 -124473968 + LTR16A LTR ERVL 1 437 -13 379 297 97 35 chrX 38126391 38126855 -124473075 + L1ME4a LINE L1 5393 5885 -236 2348 218 10 58 chrX 38128111 38128325 -124471605 + L1ME1 LINE L1 5499 5722 -444 2272 107 3 0 chrX 38128325 38128624 -124471306 - AluSx SINE Alu -12 300 1 2348 218 10 58 chrX 38128624 38129105 -124470825 + L1ME1 LINE L1 5722 6161 -5 2176 92 55 0 chrX 38129123 38129415 -124470515 + AluSg SINE Alu 1 308 -2 3537 122 61 42 chrX 38129611 38130252 -124469678 - MER39B LTR ERV1 0 653 1 2321 100 3 0 chrX 38130326 38130626 -124469304 + AluSq SINE Alu 1 301 -12 351 156 0 0 chrX 38131678 38131742 -124468188 - L1MC4a LINE L1 -119 7689 7626 3064 139 51 16 chrX 38131958 38132505 -124467425 - MER34C LTR ERV1 0 585 20 2350 148 138 16 chrX 38132505 38133005 -124466925 + LTR48 LTR ERV1 1 561 -226 3603 107 4 4 chrX 38133007 38133514 -124466416 - MER84 LTR ERV1 0 507 1 9801 106 26 8 chrX 38133514 38134992 -124464938 - MER84-int LTR ERV1 0 4954 3451 * 15831 87 24 8 chrX 38134988 38137231 -124462699 - MER84-int LTR ERV1 -2674 2280 1 1999 105 0 41 chrX 38137231 38137330 -124462600 - MER84 LTR ERVI 0 507 405 2146 124 0 0 chrX 38137330 38137629 -124462301 - AluSx SINE Alu -9 303 5 1999 105 0 41 chrX 38137629 38137844 -124462086 - MER84 LTR ERVI -102 405 206 797 194 59 11 chrX 38137842 38138028 -124461902 - Charlie4 DNA MER1_type -1766 195 1 * 2301 79 0 30 chrX 38138704 38139009 -124460921 - AluSx SINE Alu -16 296 1 1130 262 82 54 chrX 38139119 38139622 -124460308 - LTR33 LTR ERVL -3 518 2 350 185 65 0 chrX 38141049 38141141 -124458789 - MLT1J LTR MaLR 0 511 414 835 216 131 5 chrX 38141212 38141434 -124458496 - MLT1J LTR MaLR -261 250 1 378 182 0 0 chrX 38141710 38141776 -124458154 - MER45B DNA AcHobo 0 1040 975 701 177 0 31 chrX 38141787 38141917 -124458013 + FLAM_A SINE Alu 1 126 -7 937 193 78 46 chrX 38141943 38142161 -124457769 - MER45B DNA AcHobo -815 225 1 234 307 35 9 chrX 38142525 38142640 -124457290 - HAL1b LINE L1 -786 562 472 1871 255 73 43 chrX 38142669 38142779 -124457151 - L1MC4 LINE L1 -15 8027 7922 2244 118 0 3 chrX 38142779 38143084 -124456846 - AluSp SINE Alu -9 304 1 1871 255 73 43 chrX 38143084 38143184 -124456746 - L1MC4 LINE L1 -120 7922 7826 2264 101 0 7 chrX 38143184 38143481 -124456449 + AluSg SINE Alu 1 295 -15 1871 255 73 43 chrX 38143481 38143835 -124456095 - L1MC4 LINE L1 -216 7826 7484 2471 71 3 0 chrX 38143835 38144132 -124455798 - AluSp SINE Alu -15 298 1 1871 255 73 43 chrX 38144132 38144582 -124455348 - L1MC4 LINE L1 -558 7484 6981 300 250 50 12 chrX 38145092 38145172 -124454758 - L1MC4a LINE L1 -1685 6123 6041 211 289 10 10 chrX 38145187 38145284 -124454646 + (TA)n Simple_repeat Simple_repeat 2 98 0 2367 81 3 0 chrX 38145308 38145604 -124454326 - AluSp SINE Alu -16 297 1 1319 213 27 43 chrX 38145608 38145979 -124453951 - L1MC4a LINE L1 -1926 5882 5518 375 283 35 112 chrX 38146267 38146553 -124453377 + HAL1b LINE L1 100 363 -985 353 306 90 90 chrX 38146607 38147074 -124452856 + L1ME LINE L1 4560 5026 -1120 2319 110 0 0 chrX 38147079 38147379 -124452551 + AluSx SINE Alu 1 300 -12 252 0 0 0 chrX 38147512 38147540 -124452390 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7540 26 5 0 chrX 38147540 38148494 -124451436 - L1PA4 LINE L1 -12 6143 5188 842 315 26 22 chrX 38148637 38149091 -124450839 + L1ME LINE L1 5328 5783 -338 216 0 0 0 chrX 38149113 38149137 -124450793 + (TA)n Simple_repeat Simple_repeat 2 25 0 260 320 13 0 chrX 38149178 38149253 -124450677 - MIR SINE MIR -10 252 177 1501 226 86 24 chrX 38149259 38149341 -124450589 + LTR33 LTR ERVL 1 77 -444 2951 138 88 2 chrX 38149341 38149855 -124450075 - LTR64 LTR ERVK 0 558 1 1501 226 86 24 chrX 38149855 38150263 -124449667 + LTR33 LTR ERVL 77 521 0 257 224 35 0 chrX 38150283 38150341 -124449589 - MIR SINE MIR -121 141 82 410 316 30 6 chrX 38150463 38150631 -124449299 + L2 LINE L2 2197 2368 -946 402 323 201 29 chrX 38150631 38151328 -124448602 + L2 LINE L2 2489 3312 -1 2451 70 3 0 chrX 38151662 38151961 -124447969 - AluSp SINE Alu -13 300 1 783 121 0 0 chrX 38152323 38152463 -124447467 + (CCCCG)n Simple_repeat Simple_repeat 4 143 0 328 281 171 79 chrX 38152739 38153258 -124446672 + L1M2 LINE L1 757 1323 -5526 518 269 65 32 chrX 38154527 38154713 -124445217 - MIR SINE MIR -7 255 64 339 25 0 0 chrX 38154971 38155011 -124444919 + (TG)n Simple_repeat Simple_repeat 1 40 0 380 201 0 38 chrX 38155020 38155204 -124444726 + (TA)n Simple_repeat Simple_repeat 2 178 0 216 67 0 0 chrX 38155888 38155918 -124444012 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 532 198 8 24 chrX 38156326 38156452 -124443478 + MER69 DNA AcHobo 2400 2523 -3 1874 151 6 6 chrX 38157815 38158132 -124441798 - L1PB4 LINE L1 -6 6150 5834 261 375 34 40 chrX 38158868 38159044 -124440886 - L3 LINE CR1 -12 1565 1391 24 32 0 0 chrX 38160144 38160175 -124439755 + AT_rich Low_complexity Low_complexity 1 31 0 221 318 8 48 chrX 38161374 38161500 -124438430 - MIR3 SINE MIR -80 128 8 197 211 0 105 chrX 38162363 38162439 -124437491 - L2 LINE L2 -185 3087 3020 181 152 22 87 chrX 38162574 38162620 -124437310 - L2 LINE L2 -1 3312 3270 347 255 53 0 chrX 38163155 38163249 -124436681 + MER103 DNA DNA 44 142 -24 428 0 0 19 chrX 38163691 38163744 -124436186 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 1608 265 111 64 chrX 38164130 38164799 -124435131 + L2 LINE L2 2324 3034 -279 1830 59 13 4 chrX 38164799 38165036 -124434894 + L1PA5 LINE L1 5912 6150 -4 1608 265 111 64 chrX 38165036 38165330 -124434600 + L2 LINE L2 3034 3313 0 623 282 106 17 chrX 38165829 38166249 -124433681 - L1ME LINE L1 -423 5698 5265 259 287 97 15 chrX 38166544 38166812 -124433118 - L1ME LINE L1 -1315 4831 4542 25 23 0 23 chrX 38166991 38167016 -124432914 + AT_rich Low_complexity Low_complexity 1 26 -16 2020 122 3 30 chrX 38167016 38167312 -124432618 + AluSg SINE Alu 1 288 -22 25 23 0 23 chrX 38167312 38167329 -124432601 + AT_rich Low_complexity Low_complexity 26 42 0 287 265 105 19 chrX 38167433 38167595 -124432335 - L1ME LINE L1 -1944 4202 4027 210 281 0 0 chrX 38167855 38167912 -124432018 - L2 LINE L2 -1370 1944 1888 395 327 111 13 chrX 38167926 38168152 -124431778 - MIR SINE MIR -1 261 14 42583 34 3 2 chrX 38168336 38174483 -124425447 - L1PA3 LINE L1 -3 6152 2 553 256 126 51 chrX 38174528 38174656 -124425274 - L2 LINE L2 -9 3304 3187 261 0 0 0 chrX 38174656 38174685 -124425245 + (TG)n Simple_repeat Simple_repeat 2 30 0 553 256 126 51 chrX 38174685 38174810 -124425120 - L2 LINE L2 -126 3187 3032 376 260 10 0 chrX 38177693 38177797 -124422133 + L1ME LINE L1 5595 5699 -422 330 242 10 20 chrX 38178161 38178260 -124421670 - LTR16B LTR ERVL -12 452 355 423 236 130 0 chrX 38178285 38178408 -124421522 - L1MC5 LINE L1 -521 7440 7302 200 122 24 0 chrX 38178420 38178461 -124421469 + C-rich Low_complexity Low_complexity 5 46 0 2087 206 44 63 chrX 38178468 38179307 -124420623 - L1MC5 LINE L1 -658 7303 6476 3406 161 39 23 chrX 38179721 38179767 -124420163 + L1MC3 LINE L1 6601 6645 -1140 2537 63 0 0 chrX 38179767 38180067 -124419863 - AluY SINE Alu -11 300 1 3406 161 39 23 chrX 38180067 38180721 -124419209 + L1MC3 LINE L1 6645 7312 -473 255 31 0 0 chrX 38181836 38181868 -124418062 + (CA)n Simple_repeat Simple_repeat 2 33 0 342 0 0 0 chrX 38182423 38182461 -124417469 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2207 108 6 13 chrX 38182751 38183066 -124416864 - AluSq SINE Alu 0 313 1 379 289 43 52 chrX 38183067 38183299 -124416631 - MLT1J LTR MaLR -172 339 110 455 242 186 0 chrX 38183536 38183660 -124416270 + MER5A DNA MER1_type 11 157 -32 205 266 210 40 chrX 38183560 38183684 -124416246 - MER5A DNA MER1_type -23 166 22 * 424 308 57 19 chrX 38183773 38183932 -124415998 + MIR3 SINE MIR 30 194 -14 1968 151 0 19 chrX 38184403 38184714 -124415216 + AluSp SINE Alu 1 305 -8 1968 269 90 12 chrX 38185559 38186149 -124413781 + L2 LINE L2 2304 2939 -375 450 302 197 31 chrX 38186150 38186168 -124413762 - L1MEc LINE L1 -3251 2964 2950 1503 130 0 0 chrX 38186168 38186384 -124413546 - AluSg/x SINE Alu -13 299 84 450 302 197 31 chrX 38186384 38186888 -124413042 - L1MEc LINE L1 -3265 2950 2355 1229 112 6 0 chrX 38186960 38187152 -124412778 - AluSg/x SINE Alu 0 306 114 302 320 35 51 chrX 38187152 38187349 -124412581 - L1MEc LINE L1 -4110 2286 2093 518 286 95 67 chrX 38187775 38188058 -124411872 - HAL1 LINE L1 -938 1569 1279 452 272 87 42 chrX 38188065 38188514 -124411416 - L1MEc LINE L1 -5008 1197 729 596 284 73 41 chrX 38188653 38188988 -124410942 + L1M4 LINE L1 2921 3244 -2902 1754 179 37 3 chrX 38188988 38189285 -124410645 + AluJo SINE Alu 1 307 -5 596 284 73 41 chrX 38189285 38189760 -124410170 + L1M4 LINE L1 3244 3768 -2378 399 41 0 0 chrX 38189887 38189936 -124409994 + (CA)n Simple_repeat Simple_repeat 2 50 0 253 269 15 0 chrX 38190314 38190381 -124409549 + L1MEd LINE L1 599 666 -5453 23 0 0 0 chrX 38190493 38190516 -124409414 + AT_rich Low_complexity Low_complexity 1 23 0 211 205 0 0 chrX 38191441 38191480 -124408450 + T-rich Low_complexity Low_complexity 2 40 0 249 33 0 0 chrX 38191666 38191696 -124408234 + (CA)n Simple_repeat Simple_repeat 2 31 0 507 248 30 8 chrX 38192837 38192970 -124406960 - MIR SINE MIR -48 214 79 2100 149 0 3 chrX 38193334 38193643 -124406287 + AluJb SINE Alu 1 308 -4 2441 79 0 22 chrX 38194333 38194651 -124405279 + AluY SINE Alu 1 311 0 419 286 167 11 chrX 38194882 38195098 -124404832 - MIR SINE MIR 0 262 16 459 260 20 41 chrX 38196413 38196559 -124403371 - L2 LINE L2 -13 3300 3158 246 62 0 0 chrX 38196814 38196846 -124403084 - U2 snRNA snRNA -153 35 4 836 129 0 16 chrX 38196890 38197014 -124402916 + FLAM_C SINE Alu 11 132 -11 28 0 0 0 chrX 38197014 38197042 -124402888 + AT_rich Low_complexity Low_complexity 1 28 0 727 133 7 44 chrX 38199302 38199437 -124400493 - L1MB3 LINE L1 -12 6171 6042 465 267 53 7 chrX 38201584 38201734 -124398196 - MER103 DNA DNA -7 159 3 8651 181 36 19 chrX 38201810 38203950 -124395980 + L1MB8 LINE L1 3416 5596 -588 968 169 11 6 chrX 38203960 38204137 -124395793 + L1MB8 LINE L1 5998 6175 -3 1857 164 7 3 chrX 38204388 38204510 -124395420 + AluJo SINE Alu 1 121 -191 261 0 0 0 chrX 38204510 38204539 -124395391 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1857 164 7 3 chrX 38204539 38204714 -124395216 + AluJo SINE Alu 121 299 -13 8930 110 17 34 chrX 38205724 38207564 -124392366 - L1P3 LINE L1 -4433 1713 12 833 156 0 30 chrX 38209258 38209393 -124390537 - FLAM_C SINE Alu -2 131 1 2287 118 0 0 chrX 38209527 38209832 -124390098 + AluSq SINE Alu 1 305 -8 1555 73 0 0 chrX 38210103 38210294 -124389636 - AluSg/x SINE Alu -8 304 114 268 174 101 0 chrX 38211822 38211891 -124388039 + MIR SINE MIR 117 192 -70 186 43 0 0 chrX 38213744 38213767 -124386163 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chrX 38213864 38213885 -124386045 + AT_rich Low_complexity Low_complexity 1 21 0 456 148 20 69 chrX 38215196 38215297 -124384633 - LTR16A LTR ERVL -120 330 235 326 294 96 55 chrX 38215550 38215696 -124384234 - L2 LINE L2 0 3272 3121 207 182 0 0 chrX 38216380 38216413 -124383517 + polypyrimidine Low_complexity Low_complexity 2 34 0 1032 210 55 143 chrX 38216963 38217397 -124382533 - MSTD LTR MaLR 0 396 1 398 318 52 23 chrX 38217620 38217793 -124382137 - MER5B DNA MER1_type 0 178 1 1735 171 7 7 chrX 38218154 38218441 -124381489 + AluJb SINE Alu 1 287 -25 221 97 0 0 chrX 38218627 38218658 -124381272 - L2 LINE L2 -12 3301 3271 * 414 309 16 11 chrX 38218641 38218778 -124381152 + MIR3 SINE MIR 22 158 -50 400 277 78 21 chrX 38226646 38226787 -124373143 + MIR3 SINE MIR 32 180 -28 521 287 126 17 chrX 38226896 38227126 -124372804 - LTR16A LTR ERVL 0 450 196 231 297 78 0 chrX 38227427 38227491 -124372439 - L3 LINE CR1 -17 1560 1492 2244 114 0 0 chrX 38227712 38228002 -124371928 + AluSq SINE Alu 5 294 -19 2539 68 0 3 chrX 38228002 38228312 -124371618 + AluSc SINE Alu 1 309 0 33 0 0 0 chrX 38228312 38228345 -124371585 + AT_rich Low_complexity Low_complexity 1 33 0 359 155 146 39 chrX 38229683 38229786 -124370144 - L2 LINE L2 -3 3310 3197 2468 60 30 0 chrX 38230633 38230932 -124368998 - L1PA8 LINE L1 -1 6171 5864 255 61 0 0 chrX 38230977 38231010 -124368920 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 2404 171 106 11 chrX 38231681 38232142 -124367788 - MLT1D LTR MaLR 0 505 1 2043 214 37 0 chrX 38232597 38233026 -124366904 - MER110 LTR ERV1 0 491 47 199 220 17 51 chrX 38233148 38233207 -124366723 + MIR SINE MIR 8 64 -198 304 350 122 21 chrX 38233405 38233809 -124366121 + L2 LINE L2 2624 3054 -259 1857 126 0 4 chrX 38233870 38234139 -124365791 - L1PB1 LINE L1 -8 6143 5876 369 57 19 0 chrX 38234139 38234192 -124365738 + L1P LINE L1 5352 5405 -749 208 356 19 29 chrX 38235976 38236080 -124363850 - L2 LINE L2 -227 3045 2943 302 256 12 0 chrX 38237257 38237343 -124362587 + L2 LINE L2 2231 2317 -997 264 284 28 55 chrX 38237373 38237482 -124362448 + L2 LINE L2 2574 2679 -635 873 290 40 2 chrX 38237497 38237878 -124362052 - LTR16A LTR ERVL -5 445 1 1213 274 65 26 chrX 38237878 38238340 -124361590 + L2 LINE L2 2689 3186 -127 212 0 36 0 chrX 38238340 38238368 -124361562 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1213 274 65 26 chrX 38238368 38238493 -124361437 + L2 LINE L2 3186 3305 -8 309 260 96 41 chrX 38238698 38238844 -124361086 + MIR SINE MIR 3 156 -106 24 0 0 0 chrX 38238910 38238934 -124360996 + AT_rich Low_complexity Low_complexity 1 24 0 673 254 109 109 chrX 38239001 38239587 -124360343 - MLT1L LTR MaLR -8 607 22 201 162 0 0 chrX 38241687 38241724 -124358206 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 410 310 76 16 chrX 38241982 38242166 -124357764 + LTR16C LTR ERVL 297 491 0 219 36 0 0 chrX 38242265 38242293 -124357637 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 2094 136 0 0 chrX 38242293 38242579 -124357351 - AluSx SINE Alu -26 286 1 186 296 19 0 chrX 38242855 38242909 -124357021 - MER5B DNA MER1_type -120 58 4 2512 21 0 7 chrX 38243916 38244195 -124355735 + L1PA5 LINE L1 5871 6147 -7 225 94 0 0 chrX 38244195 38244227 -124355703 + (TA)n Simple_repeat Simple_repeat 1 32 0 1903 125 56 0 chrX 38244729 38245017 -124354913 - AluSx SINE Alu -8 304 1 2118 186 47 23 chrX 38245184 38245571 -124354359 + MSTD LTR MaLR 1 396 0 443 258 39 26 chrX 38246523 38246678 -124353252 + MIR3 SINE MIR 46 202 -6 210 378 199 20 chrX 38247268 38247620 -124352310 + L2 LINE L2 2858 3272 0 25 31 0 0 chrX 38247840 38247872 -124352058 + AT_rich Low_complexity Low_complexity 1 32 0 260 333 56 28 chrX 38249387 38249531 -124350399 + MIR3 SINE MIR 61 208 0 756 247 12 0 chrX 38249579 38249633 -124350297 - MIR SINE MIR -96 166 114 1871 259 22 16 chrX 38249633 38250080 -124349850 + LTR16A LTR ERVL 1 450 0 756 247 12 0 chrX 38250080 38250187 -124349743 - MIR SINE MIR -148 114 3 567 286 16 31 chrX 38250193 38250385 -124349545 - MIR SINE MIR -55 207 19 1973 147 9 9 chrX 38250766 38251113 -124348817 + MER47A DNA MER2_type 20 366 0 2204 165 61 10 chrX 38252273 38252680 -124347250 + MSTA LTR MaLR 1 428 0 205 297 139 10 chrX 38253045 38253146 -124346784 + L2 LINE L2 3154 3267 -5 2272 128 19 25 chrX 38253176 38253542 -124346388 + THE1B LTR MaLR 1 364 0 505 152 19 29 chrX 38253938 38254043 -124345887 + L1MB8 LINE L1 6075 6178 0 395 353 0 9 chrX 38254162 38254278 -124345652 - MIR SINE MIR -78 130 16 706 86 9 0 chrX 38254415 38254520 -124345410 - L1MA2 LINE L1 0 6304 6199 21 36 0 0 chrX 38254671 38254699 -124345231 + AT_rich Low_complexity Low_complexity 1 28 0 4069 23 2 0 chrX 38256229 38256703 -124343227 - L1PA4 LINE L1 -4 6151 5677 1201 21 0 0 chrX 38256703 38256845 -124343085 + L1PA4 LINE L1 5531 5672 -483 21 0 0 0 chrX 38258612 38258633 -124341297 + AT_rich Low_complexity Low_complexity 1 21 0 235 220 20 0 chrX 38258700 38258750 -124341180 + CT-rich Low_complexity Low_complexity 2 52 0 252 229 96 60 chrX 38258866 38259032 -124340898 + L1 LINE L1 4875 5046 -1100 355 244 13 13 chrX 38259207 38259285 -124340645 - L2 LINE L2 -50 3263 3186 184 325 25 50 chrX 38259637 38259717 -124340213 + L2 LINE L2 3228 3305 -8 192 282 0 0 chrX 38259861 38259939 -124339991 + GA-rich Low_complexity Low_complexity 4 81 0 8652 78 3 5 chrX 38261601 38262851 -124337079 + L1P LINE L1 2986 4233 -1913 15531 115 20 17 chrX 38263023 38264481 -124335449 - Tigger1 DNA MER2_type 0 2418 946 2075 114 0 0 chrX 38264481 38264785 -124335145 + AluSx SINE Alu 1 304 0 15531 115 20 17 chrX 38264785 38265735 -124334195 - Tigger1 DNA MER2_type -1472 946 1 277 319 0 15 chrX 38266554 38266689 -124333241 + HAL1 LINE L1 773 905 -1602 22 0 0 0 chrX 38267549 38267571 -124332359 + AT_rich Low_complexity Low_complexity 1 22 0 2524 145 16 21 chrX 38267576 38268010 -124331920 - MSTB1 LTR MaLR 0 432 1 485 287 36 36 chrX 38268070 38268349 -124331581 + L1MC4a LINE L1 5615 5893 -1915 48 43 0 0 chrX 38268392 38268461 -124331469 + AT_rich Low_complexity Low_complexity 1 69 0 1987 140 46 17 chrX 38268531 38268882 -124331048 - MER46B DNA MER2_type 0 236 1 575 209 39 0 chrX 38269376 38269505 -124330425 + L1MA9 LINE L1 6142 6275 -37 197 222 0 22 chrX 38269699 38269744 -124330186 - L2 LINE L2 -23 3249 3206 306 266 159 18 chrX 38270014 38270127 -124329803 + L2 LINE L2 3121 3249 -23 786 150 50 62 chrX 38270201 38270361 -124329569 - FRAM SINE Alu -18 158 1 254 200 15 31 chrX 38270457 38270522 -124329408 + L2 LINE L2 3208 3271 -1 606 157 22 135 chrX 38271056 38271106 -124328824 - MER3 DNA MER1_type -31 131 77 2191 93 0 0 chrX 38271106 38271385 -124328545 + AluY SINE Alu 16 294 -17 606 157 22 135 chrX 38271385 38271512 -124328418 - MER3 DNA MER1_type -85 77 21 5841 112 20 1 chrX 38271921 38272955 -124326975 + L1PA16 LINE L1 5105 6155 -11 1597 259 38 45 chrX 38273247 38273494 -124326436 + L2 LINE L2 2626 2873 -440 2238 101 0 3 chrX 38273494 38273790 -124326140 - AluSc SINE Alu -14 295 1 1597 259 38 45 chrX 38273790 38274227 -124325703 + L2 LINE L2 2873 3309 -4 4442 151 52 13 chrX 38274530 38275349 -124324581 - MER21B LTR ERV1 -12 851 1 391 182 0 30 chrX 38276141 38276240 -124323690 + GA-rich Low_complexity Low_complexity 2 97 0 315 256 0 26 chrX 38276277 38276355 -124323575 + L2 LINE L2 3197 3272 0 856 292 82 72 chrX 38277125 38277628 -124322302 + L2 LINE L2 2359 2866 -448 477 315 37 59 chrX 38277604 38277928 -124322002 + L2 LINE L2 2996 3312 -1 * 236 313 112 8 chrX 38278400 38278534 -124321396 - MIR SINE MIR -12 250 103 272 286 43 14 chrX 38279347 38279487 -124320443 - L1ME4a LINE L1 -3 6118 5975 30 89 0 0 chrX 38279973 38280052 -124319878 + AT_rich Low_complexity Low_complexity 1 79 0 275 254 30 67 chrX 38280197 38280362 -124319568 + L1ME LINE L1 5687 5845 -276 275 256 87 35 chrX 38280480 38280652 -124319278 - L1ME4a LINE L1 -202 5919 5739 188 217 14 0 chrX 38280684 38280744 -124319186 + CT-rich Low_complexity Low_complexity 2 65 -6 740 11 0 0 chrX 38280744 38280834 -124319096 - L1PA2 LINE L1 0 6155 6066 2251 60 0 0 chrX 38282289 38282570 -124317360 + L1PA8 LINE L1 5887 6167 -5 247 188 141 16 chrX 38282780 38282844 -124317086 - L2 LINE L2 0 3313 3242 261 167 0 19 chrX 38284033 38284066 -124315864 - MLT2D LTR ERVL -6 514 481 231 36 0 0 chrX 38284066 38284094 -124315836 + (GA)n Simple_repeat Simple_repeat 1 28 0 261 167 0 19 chrX 38284094 38284114 -124315816 - MLT2D LTR ERVL -39 481 462 243 133 0 0 chrX 38284158 38284203 -124315727 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 1633 166 87 6 chrX 38284212 38284544 -124315386 - MLT2D LTR ERVL -54 360 2 1612 117 8 0 chrX 38284661 38284926 -124315004 - L1MA8 LINE L1 -22 6269 6003 2274 199 69 19 chrX 38284957 38285525 -124314405 - L1ME2 LINE L1 -56 6108 5513 3762 187 200 10 chrX 38285635 38286699 -124313231 - L1MD3 LINE L1 -10 7985 6720 951 216 69 0 chrX 38287139 38287357 -124312573 + MIR SINE MIR 20 252 -10 279 54 0 0 chrX 38288307 38288344 -124311586 + (CA)n Simple_repeat Simple_repeat 2 38 0 1983 103 49 0 chrX 38288344 38288607 -124311323 - AluSx SINE Alu -36 276 1 304 315 14 62 chrX 38289421 38289567 -124310363 - MIR SINE MIR -57 205 67 2858 10 0 0 chrX 38289577 38289888 -124310042 + AluY SINE Alu 1 311 0 711 172 77 50 chrX 38289931 38290192 -124309738 + Charlie1 DNA MER1_type 2453 2720 -41 360 303 63 7 chrX 38290307 38290449 -124309481 + MIR SINE MIR 51 200 -62 6719 87 19 10 chrX 38291313 38292325 -124307605 - L1MA2 LINE L1 -4 6300 5280 881 225 92 29 chrX 38292561 38292801 -124307129 - MIR SINE MIR 0 262 8 563 294 81 9 chrX 38292828 38293039 -124306891 - MIR SINE MIR -17 245 20 268 160 0 0 chrX 38293041 38293091 -124306839 - L1MA10 LINE L1 -2 6332 6283 216 0 0 0 chrX 38293319 38293343 -124306587 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1048 222 54 84 chrX 38293343 38293771 -124306159 - L2 LINE L2 -13 3300 2886 371 156 0 22 chrX 38294311 38294401 -124305529 + (TGGA)n Simple_repeat Simple_repeat 2 89 0 1486 245 81 37 chrX 38295324 38295977 -124303953 + L1ME3A LINE L1 5485 6166 -4 444 103 13 13 chrX 38295985 38296063 -124303867 + L1MB8 LINE L1 6092 6169 -9 410 196 10 0 chrX 38296656 38296753 -124303177 + CT-rich Low_complexity Low_complexity 2 99 0 1349 282 183 8 chrX 38296925 38297645 -124302285 + L2 LINE L2 2454 3313 0 1337 133 12 8 chrX 38297715 38297955 -124301975 - L1MB7 LINE L1 -256 5928 5688 280 241 136 34 chrX 38297959 38298086 -124301844 - MIR SINE MIR -63 145 19 1426 266 25 18 chrX 38298780 38299227 -124300703 + LTR16A LTR ERVL 1 450 0 205 321 45 37 chrX 38300322 38300456 -124299474 + MIR SINE MIR 127 261 -1 517 213 102 0 chrX 38300547 38300674 -124299256 + MIR SINE MIR 77 216 -46 317 281 89 60 chrX 38301457 38301649 -124298281 - MIR SINE MIR -34 174 17 417 189 0 0 chrX 38302430 38302520 -124297410 + (CAT)n Simple_repeat Simple_repeat 2 91 0 804 277 29 25 chrX 38302520 38302762 -124297168 - MIR SINE MIR -1 261 19 2523 81 0 0 chrX 38302781 38303088 -124296842 - AluSx SINE Alu -5 307 1 2262 114 3 0 chrX 38304017 38304314 -124295616 + AluSx SINE Alu 1 298 -14 288 200 0 0 chrX 38304428 38304488 -124295442 + (CA)n Simple_repeat Simple_repeat 1 60 0 653 252 13 0 chrX 38304514 38304669 -124295261 + L2 LINE L2 2687 2843 -471 464 269 81 0 chrX 38304673 38304822 -124295108 - MER63A DNA MER1_type -6 204 44 566 248 66 129 chrX 38304862 38305180 -124294750 + L2 LINE L2 2853 3150 -163 422 212 40 10 chrX 38305662 38305761 -124294169 + L2 LINE L2 3151 3252 -61 820 273 144 73 chrX 38306022 38306126 -124293804 - L2 LINE L2 -2 3311 3216 1764 174 22 68 chrX 38306126 38306541 -124293389 - MSTD LTR MaLR 0 396 1 820 273 144 73 chrX 38306541 38306779 -124293151 - L2 LINE L2 -97 3216 2925 1301 224 96 76 chrX 38306779 38307319 -124292611 - MLT1H1 LTR MaLR 0 555 5 820 273 144 73 chrX 38307319 38307440 -124292490 - L2 LINE L2 -388 2925 2814 626 332 32 22 chrX 38308318 38308569 -124291361 + MIR SINE MIR 12 262 0 1469 142 76 7 chrX 38309481 38309784 -124290146 + MER33 DNA MER1_type 1 324 0 375 23 0 0 chrX 38310609 38310653 -124289277 + (TG)n Simple_repeat Simple_repeat 2 45 0 374 258 12 43 chrX 38310957 38311120 -124288810 - HAL1b LINE L1 -19 1329 1172 220 196 0 22 chrX 38311121 38311167 -124288763 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 191 170 21 0 chrX 38311175 38311222 -124288708 + GA-rich Low_complexity Low_complexity 4 51 0 497 217 92 20 chrX 38311248 38311400 -124288530 - HAL1b LINE L1 -200 1148 986 431 267 95 35 chrX 38311411 38311696 -124288234 - HAL1b LINE L1 -413 935 634 2229 139 78 24 chrX 38311996 38312406 -124287524 + Tigger2a DNA MER2_type 3 434 0 218 213 21 0 chrX 38312761 38312808 -124287122 + MIR SINE MIR 104 151 -111 1068 61 0 0 chrX 38316980 38317112 -124282818 - AluSq/x SINE Alu -181 132 1 25 51 0 0 chrX 38318635 38318674 -124281256 + AT_rich Low_complexity Low_complexity 1 39 0 240 209 0 0 chrX 38320011 38320054 -124279876 + L2 LINE L2 3261 3303 -10 3718 94 4 20 chrX 38320106 38320649 -124279281 + L1P3 LINE L1 4 537 -5924 264 26 26 0 chrX 38320632 38320671 -124279259 + L1PA7 LINE L1 6110 6149 -5 * 263 297 30 0 chrX 38320671 38320772 -124279158 + Tigger8 DNA MER2_type 463 566 -100 5374 139 34 30 chrX 38321032 38322818 -124277112 + L1MA7 LINE L1 4498 6291 0 22 0 0 0 chrX 38322818 38322840 -124277090 + AT_rich Low_complexity Low_complexity 1 22 0 489 47 0 0 chrX 38322972 38323036 -124276894 + (CA)n Simple_repeat Simple_repeat 1 64 0 2298 188 54 51 chrX 38324074 38324626 -124275304 + MLT2B3 LTR ERVL 1 554 0 571 285 172 5 chrX 38325041 38325227 -124274703 - MIR SINE MIR -45 217 1 2231 94 0 3 chrX 38326676 38326982 -124272948 + AluSx SINE Alu 1 305 0 539 260 141 6 chrX 38327036 38327213 -124272717 - MIR SINE MIR -50 212 12 2052 111 0 3 chrX 38328122 38328445 -124271485 - AluSx SINE Alu 0 312 24 832 204 168 5 chrX 38328764 38328960 -124270970 - MIR SINE MIR -3 259 32 427 237 17 172 chrX 38329044 38329276 -124270654 - MER91A DNA MER1_type 0 196 1 225 159 91 0 chrX 38329337 38329381 -124270549 + L2 LINE L2 3221 3268 -4 427 296 143 25 chrX 38329593 38329796 -124270134 - MIR SINE MIR 0 262 36 21 82 0 0 chrX 38330788 38330837 -124269093 + AT_rich Low_complexity Low_complexity 1 49 0 834 122 0 0 chrX 38330954 38331077 -124268853 - L1MA3 LINE L1 0 6305 6183 280 299 0 0 chrX 38331680 38331757 -124268173 + MIR SINE MIR 69 145 -117 404 256 15 118 chrX 38331988 38332191 -124267739 + L1MC4 LINE L1 7821 8002 -40 463 49 0 0 chrX 38332633 38332694 -124267236 + AluY SINE Alu 1 61 -249 1732 60 0 9 chrX 38332694 38332912 -124267018 + AluY SINE Alu 96 311 0 2497 156 26 13 chrX 38333116 38333577 -124266353 + MLT1C LTR MaLR 1 467 0 3284 68 5 0 chrX 38333871 38334297 -124265633 + L1PA8 LINE L1 5736 6163 -9 291 54 0 0 chrX 38335014 38335051 -124264879 + (TG)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chrX 38335632 38335664 -124264266 + AT_rich Low_complexity Low_complexity 1 32 0 2278 108 0 0 chrX 38335702 38335998 -124263932 - AluSx SINE Alu -16 296 1 2628 136 21 23 chrX 38336092 38336526 -124263404 - Tigger2a DNA MER2_type -1 433 1 297 0 0 0 chrX 38336699 38336732 -124263198 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 702 35 0 0 chrX 38336731 38336816 -124263114 + (GA)n Simple_repeat Simple_repeat 2 86 0 2146 101 4 0 chrX 38336817 38337094 -124262836 - AluSp SINE Alu -35 278 1 220 320 127 23 chrX 38337986 38338245 -124261685 + L2 LINE L2 2807 3092 -180 3099 289 143 35 chrX 38339028 38340837 -124259093 + L2 LINE L2 1289 3302 -11 270 0 0 0 chrX 38341471 38341501 -124258429 + (TG)n Simple_repeat Simple_repeat 2 31 0 401 296 72 56 chrX 38342674 38343157 -124256773 + L1ME4a LINE L1 5534 6024 -97 211 264 14 14 chrX 38343771 38343843 -124256087 + (TA)n Simple_repeat Simple_repeat 2 73 0 241 177 32 16 chrX 38343885 38343947 -124255983 + (TA)n Simple_repeat Simple_repeat 1 63 0 3159 162 12 18 chrX 38344609 38345209 -124254721 + L1MB7 LINE L1 5588 6183 -1 321 372 99 21 chrX 38345569 38345811 -124254119 - L2 LINE L2 -366 2948 2688 2091 124 9 0 chrX 38346031 38346362 -124253568 + L1MB3 LINE L1 5849 6182 -1 708 230 106 18 chrX 38346481 38346707 -124253223 - LTR16C LTR ERVL -155 336 91 261 57 0 0 chrX 38348470 38348505 -124251425 + (TG)n Simple_repeat Simple_repeat 2 36 0 228 208 104 0 chrX 38348529 38348577 -124251353 + L2 LINE L2 3214 3266 -6 256 309 55 50 chrX 38349434 38349654 -124250276 + L2 LINE L2 855 1075 -2239 2411 86 0 0 chrX 38350136 38350439 -124249491 + AluY SINE Alu 9 311 0 642 275 76 9 chrX 38350577 38350876 -124249054 - LTR16A LTR ERVL -11 439 66 373 321 82 8 chrX 38351170 38351304 -124248626 + L2 LINE L2 3129 3272 0 558 275 150 4 chrX 38352072 38352352 -124247578 + L1ME4a LINE L1 5547 5867 -254 262 222 60 34 chrX 38352432 38352549 -124247381 + L1ME4a LINE L1 5993 6112 -9 2302 83 0 0 chrX 38353287 38353589 -124246341 - AluSc SINE Alu -7 302 1 2069 120 0 3 chrX 38355561 38355874 -124244056 - AluSx SINE Alu 0 312 1 348 248 92 18 chrX 38356032 38356141 -124243789 - L1ME4a LINE L1 -12 6109 5993 218 296 114 0 chrX 38356151 38356239 -124243691 - MIR3 SINE MIR -109 99 2 971 230 102 17 chrX 38356598 38356833 -124243097 - MIR SINE MIR 0 262 8 37 23 0 0 chrX 38357164 38357208 -124242722 + AT_rich Low_complexity Low_complexity 1 44 0 433 305 68 16 chrX 38357666 38357856 -124242074 - MIR SINE MIR -41 221 22 1210 192 77 0 chrX 38357868 38358023 -124241907 - AluJo SINE Alu -22 290 110 342 0 0 0 chrX 38358023 38358061 -124241869 + (TG)n Simple_repeat Simple_repeat 1 38 0 1210 192 77 0 chrX 38358061 38358139 -124241791 - AluJo SINE Alu -202 110 39 421 331 104 19 chrX 38359302 38359647 -124240283 + L2 LINE L2 2718 3082 -190 188 35 35 0 chrX 38359827 38359856 -124240074 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 221 171 0 0 chrX 38361979 38362020 -124237910 + (CCTG)n Simple_repeat Simple_repeat 4 44 0 293 248 248 16 chrX 38362368 38362493 -124237437 - MIR SINE MIR 0 262 109 285 29 0 0 chrX 38362517 38362551 -124237379 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 1230 197 182 3 chrX 38363529 38363864 -124236066 + MSTD LTR MaLR 1 395 -1 448 186 12 23 chrX 38364329 38364415 -124235515 - MER5A DNA MER1_type -95 94 10 695 353 90 21 chrX 38364517 38364894 -124235036 - L2 LINE L2 -1 3271 2869 290 299 0 23 chrX 38365080 38365167 -124234763 - L2 LINE L2 0 3313 3229 802 175 0 0 chrX 38366498 38366624 -124233306 + FLAM_C SINE Alu 1 126 -7 4013 154 33 29 chrX 38367429 38368388 -124231542 - L1MA9 LINE L1 -271 6041 5064 216 0 0 0 chrX 38368388 38368412 -124231518 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4013 154 33 29 chrX 38368412 38368970 -124230960 - L1MA9 LINE L1 -1248 5064 4509 266 146 18 0 chrX 38369152 38369207 -124230723 - L1MC4 LINE L1 -1 8041 7986 2430 210 33 18 chrX 38369219 38370008 -124229922 - L1MC4 LINE L1 -149 7893 6941 301 325 0 0 chrX 38370033 38370153 -124229777 + L1P LINE L1 4901 5020 -1126 667 199 14 0 chrX 38370439 38370585 -124229345 + MLT1A2 LTR MaLR 219 366 -8 24 0 0 0 chrX 38370642 38370666 -124229264 + AT_rich Low_complexity Low_complexity 1 24 0 893 120 0 54 chrX 38371134 38371318 -124228612 + L1MA7 LINE L1 6116 6289 -2 737 263 59 27 chrX 38371500 38371873 -124228057 + L1MC5 LINE L1 7529 7913 -48 230 0 0 32 chrX 38372920 38372951 -124226979 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 349 93 0 0 chrX 38373083 38373137 -124226793 - MADE1 DNA Mariner 0 80 27 2190 131 0 0 chrX 38373143 38373456 -124226474 + AluSq SINE Alu 1 313 0 826 144 32 27 chrX 38373665 38373853 -124226077 + MER53 DNA DNA 1 189 0 212 341 87 48 chrX 38373992 38374118 -124225812 + L2 LINE L2 3142 3272 0 1921 128 32 4 chrX 38374605 38374886 -124225044 - AluSx SINE Alu -17 295 7 1063 148 14 56 chrX 38375044 38375146 -124224784 - MER20 DNA MER1_type -12 207 117 1214 223 37 72 chrX 38375146 38375522 -124224408 + MLT1A1 LTR MaLR 3 365 0 1063 148 14 56 chrX 38375522 38375635 -124224295 - MER20 DNA MER1_type -102 117 1 2108 112 0 3 chrX 38376425 38376712 -124223218 + AluSx SINE Alu 1 286 -26 26 0 0 0 chrX 38376722 38376748 -124223182 + AT_rich Low_complexity Low_complexity 1 26 0 1379 169 14 21 chrX 38376933 38377212 -124222718 + L1MB5 LINE L1 5898 6174 0 21 36 0 0 chrX 38377269 38377297 -124222633 + AT_rich Low_complexity Low_complexity 1 28 0 241 351 96 29 chrX 38377300 38377645 -124222285 + L1MEd LINE L1 88 455 -5664 252 0 0 0 chrX 38379112 38379140 -124220790 + (CA)n Simple_repeat Simple_repeat 2 29 0 455 300 152 19 chrX 38379277 38379600 -124220330 - LTR16C LTR ERVL -3 488 123 189 0 0 0 chrX 38379778 38379799 -124220131 + (T)n Simple_repeat Simple_repeat 1 21 0 267 293 0 40 chrX 38380501 38380600 -124219330 - LTR67 LTR ERVL -28 529 435 238 161 25 99 chrX 38383295 38383376 -124216554 + GA-rich Low_complexity Low_complexity 3 77 0 251 324 0 18 chrX 38383413 38383524 -124216406 - MLT1I LTR MaLR -300 109 1 289 320 173 33 chrX 38383947 38384097 -124215833 - L2 LINE L2 0 3272 3102 1755 170 31 10 chrX 38384122 38384392 -124215538 + AluJb SINE Alu 1 279 -33 489 17 0 0 chrX 38384392 38384450 -124215480 + (CA)n Simple_repeat Simple_repeat 1 58 0 1755 170 31 10 chrX 38384450 38384468 -124215462 + AluJb SINE Alu 279 295 -17 2179 100 0 0 chrX 38385313 38385621 -124214309 + AluSc SINE Alu 1 308 0 305 323 135 65 chrX 38386154 38386287 -124213643 + L2 LINE L2 2809 2931 -341 627 200 49 27 chrX 38386287 38386472 -124213458 + MER53 DNA DNA 1 189 0 305 323 135 65 chrX 38386472 38386679 -124213251 + L2 LINE L2 2931 3173 -99 1985 168 7 0 chrX 38387051 38387361 -124212569 + AluJb SINE Alu 1 312 0 1766 147 4 0 chrX 38387374 38387633 -124212297 + AluSx SINE Alu 5 264 -48 278 171 0 0 chrX 38387633 38387674 -124212256 + AluJ/FLAM SINE Alu 17 57 -245 249 294 265 10 chrX 38387953 38388055 -124211875 - MIR3 SINE MIR -51 157 30 185 259 154 86 chrX 38388109 38388271 -124211659 - L3b LINE CR1 -163 1420 1248 978 95 0 14 chrX 38389430 38389577 -124210353 - L1PA16 LINE L1 -1 6165 6021 400 218 98 30 chrX 38389793 38389926 -124210004 - MIR SINE MIR -77 185 44 * 430 311 20 20 chrX 38389925 38390073 -124209857 + MIR SINE MIR 63 210 -52 * 565 330 165 17 chrX 38390051 38390457 -124209473 - L3 LINE CR1 -935 642 177 2059 144 0 3 chrX 38390532 38390844 -124209086 + AluSx SINE Alu 1 311 -1 2603 145 21 5 chrX 38390893 38391314 -124208616 + MSTA LTR MaLR 1 428 0 336 290 109 7 chrX 38391391 38391529 -124208401 - MIR SINE MIR -1 261 110 195 114 0 0 chrX 38391553 38391588 -124208342 + (A)n Simple_repeat Simple_repeat 1 35 0 25 90 0 0 chrX 38392077 38392144 -124207786 + AT_rich Low_complexity Low_complexity 1 67 0 32 0 0 0 chrX 38392317 38392349 -124207581 + AT_rich Low_complexity Low_complexity 1 32 0 2329 127 0 6 chrX 38392375 38392736 -124207194 - L1PA13 LINE L1 0 6163 5805 1986 134 3 27 chrX 38394307 38394606 -124205324 - AluSx SINE Alu -20 292 1 562 125 29 29 chrX 38394700 38394804 -124205126 + MLT1D LTR MaLR 402 505 0 380 273 34 34 chrX 38395361 38395599 -124204331 - L1MEc LINE L1 -4833 1709 1472 728 152 179 0 chrX 38395603 38395746 -124204184 - MER7A DNA MER2_type -3 334 166 1293 129 51 14 chrX 38395746 38395963 -124203967 - MER30B DNA MER1_type 0 230 6 295 48 24 0 chrX 38395974 38396016 -124203914 - MER30B DNA MER1_type -135 55 13 * 1190 110 0 0 chrX 38396014 38396187 -124203743 - MER7A DNA MER2_type -173 173 3 3028 259 67 9 chrX 38396189 38397201 -124202729 - L1MEc LINE L1 -5219 1606 536 21 0 0 0 chrX 38397756 38397777 -124202153 + AT_rich Low_complexity Low_complexity 1 21 0 566 287 146 25 chrX 38397852 38398517 -124201413 + L1ME4a LINE L1 5373 6119 -2 235 342 56 82 chrX 38399455 38399651 -124200279 - MIR3 SINE MIR -1 207 17 195 162 0 0 chrX 38399667 38399704 -124200226 + GA-rich Low_complexity Low_complexity 3 39 0 2145 178 0 5 chrX 38399803 38400185 -124199745 + MLT1B LTR MaLR 1 380 -10 24 0 0 0 chrX 38401098 38401122 -124198808 + AT_rich Low_complexity Low_complexity 1 24 0 204 190 17 17 chrX 38401160 38401218 -124198712 + (TTA)n Simple_repeat Simple_repeat 1 58 0 376 160 7 43 chrX 38401232 38401522 -124198408 + (TA)n Simple_repeat Simple_repeat 1 279 0 30925 94 26 10 chrX 38401545 38407133 -124192797 - L1PA7 LINE L1 -15 6454 742 819 177 0 34 chrX 38407280 38407427 -124192503 - FLAM_C SINE Alu 0 143 2 1376 241 138 0 chrX 38408300 38408648 -124191282 - MSTD LTR MaLR 0 396 1 268 171 186 57 chrX 38409121 38409191 -124190739 + MSTD LTR MaLR 174 252 -144 * 379 276 39 31 chrX 38409189 38409316 -124190614 - MLT1H LTR MaLR -29 520 393 1129 165 6 6 chrX 38409321 38409503 -124190427 - MER58A DNA MER1_type -1 223 42 244 233 0 0 chrX 38409552 38409595 -124190335 - MLT1H LTR MaLR -195 354 312 335 260 13 0 chrX 38409640 38409717 -124190213 - MLT1H LTR MaLR -392 157 80 598 309 15 10 chrX 38410507 38410711 -124189219 - MIR SINE MIR -17 245 41 1961 144 11 107 chrX 38411260 38411642 -124188288 + Tigger3(Golem) DNA MER2_type 1 3025 -4 284 267 233 0 chrX 38411851 38411941 -124187989 + MIR SINE MIR 20 130 -132 1328 169 6 124 chrX 38412043 38412399 -124187531 + MLT1D LTR MaLR 1 314 -191 1116 175 6 129 chrX 38412397 38412723 -124187207 - MLT1D LTR MaLR -148 357 72 * 301 266 7 58 chrX 38412890 38413044 -124186886 - L2 LINE L2 -158 3155 3010 583 186 86 43 chrX 38413463 38413603 -124186327 + L2 LINE L2 3168 3313 0 1525 215 95 44 chrX 38413969 38414379 -124185551 + MER74A LTR ERVL 1 431 -127 3235 133 36 7 chrX 38414778 38415380 -124184550 + L1M2 LINE L1 5181 5801 -511 2810 193 2 4 chrX 38415364 38415909 -124184021 + L1P LINE L1 4397 4940 -1206 * 1314 129 0 30 chrX 38415911 38416113 -124183817 + AluSg/x SINE Alu 100 295 -17 1011 138 144 0 chrX 38416129 38416296 -124183634 - AluSx SINE Alu -87 225 35 612 147 0 0 chrX 38416296 38416391 -124183539 - L1P LINE L1 -1161 4985 4891 241 298 87 0 chrX 38416536 38416640 -124183290 + L2 LINE L2 2972 3084 -188 815 247 50 0 chrX 38417057 38417276 -124182654 + L1M4 LINE L1 4896 5125 -1021 474 221 71 32 chrX 38417497 38417651 -124182279 + L1MC4 LINE L1 7759 7918 -124 21 0 0 0 chrX 38417690 38417711 -124182219 + AT_rich Low_complexity Low_complexity 1 21 0 526 238 64 23 chrX 38417749 38417921 -124182009 + L1MC4 LINE L1 7853 8031 -11 198 363 32 38 chrX 38417953 38418110 -124181820 - L3 LINE CR1 -210 1367 1212 185 280 243 9 chrX 38419396 38419503 -124180427 + MIR3 SINE MIR 59 190 -18 360 324 0 0 chrX 38419971 38420073 -124179857 + MIR SINE MIR 48 149 -113 1668 160 15 0 chrX 38420093 38420362 -124179568 + AluJo SINE Alu 9 281 -31 186 423 21 10 chrX 38421418 38421515 -124178415 - MIR SINE MIR -78 130 33 1213 179 19 19 chrX 38421709 38421972 -124177958 + MER33 DNA MER1_type 62 324 0 2280 117 3 0 chrX 38422661 38422968 -124176962 - AluSx SINE Alu -4 308 1 888 232 11 76 chrX 38423226 38423489 -124176441 - MIR SINE MIR 0 262 17 209 292 0 0 chrX 38423683 38423731 -124176199 + MIR3 SINE MIR 133 180 -28 291 265 69 0 chrX 38424219 38424321 -124175609 + MIR SINE MIR 130 238 -24 359 83 17 0 chrX 38424352 38424412 -124175518 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 569 165 82 0 chrX 38424415 38424512 -124175418 - FLAM_A SINE Alu -37 105 1 220 371 76 0 chrX 38425038 38425143 -124174787 + L2 LINE L2 3133 3245 -27 646 289 61 2 chrX 38425293 38425570 -124174360 - LTR16A LTR ERVL 0 450 92 298 374 49 0 chrX 38427010 38427173 -124172757 + MIR3 SINE MIR 36 206 -2 504 308 8 0 chrX 38429788 38429908 -124170022 + MER5B DNA MER1_type 58 178 0 195 42 0 0 chrX 38430073 38430097 -124169833 + (A)n Simple_repeat Simple_repeat 1 24 0 1760 158 7 11 chrX 38430746 38431054 -124168876 + AluJo SINE Alu 1 307 0 443 369 45 29 chrX 38431158 38431467 -124168463 + L3 LINE CR1 64 377 -1200 1195 168 0 0 chrX 38431597 38431770 -124168160 - FAM SINE Alu -2 173 1 312 316 28 42 chrX 38432416 38432631 -124167299 + L2 LINE L2 2764 2975 -339 288 0 0 0 chrX 38432742 38432774 -124167156 + (CA)n Simple_repeat Simple_repeat 2 33 0 506 255 153 0 chrX 38432963 38433120 -124166810 - MER5A DNA MER1_type 0 189 9 642 251 29 29 chrX 38433208 38433415 -124166515 - MIR SINE MIR -49 213 7 354 241 9 71 chrX 38434075 38434187 -124165743 + L2 LINE L2 3197 3301 -12 435 317 96 29 chrX 38434899 38435107 -124164823 - MIR SINE MIR -14 248 27 351 268 140 30 chrX 38435645 38435809 -124164121 + MIR SINE MIR 63 244 -18 546 324 0 28 chrX 38439792 38439971 -124159959 + MIR3 SINE MIR 17 190 -18 849 242 88 48 chrX 38440644 38441102 -124158828 + L1MC4a LINE L1 5351 5813 -308 30 27 0 0 chrX 38441376 38441413 -124158517 + AT_rich Low_complexity Low_complexity 1 37 0 226 301 54 21 chrX 38442806 38442899 -124157031 - L2 LINE L2 -9 3304 3209 22 35 0 0 chrX 38443099 38443128 -124156802 + AT_rich Low_complexity Low_complexity 1 29 0 540 254 28 7 chrX 38444325 38444467 -124155463 + MIR3 SINE MIR 58 202 -6 1738 181 0 13 chrX 38444747 38445078 -124154852 + AluJb SINE Alu 1 327 0 232 45 0 68 chrX 38448421 38448465 -124151465 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 307 302 78 35 chrX 38450764 38450880 -124149050 + L2 LINE L2 3151 3271 -1 25 31 0 0 chrX 38451300 38451332 -124148598 + AT_rich Low_complexity Low_complexity 1 32 0 447 68 0 0 chrX 38453076 38453135 -124146795 + (GA)n Simple_repeat Simple_repeat 2 60 0 401 181 7 138 chrX 38455741 38455879 -124144051 + LTR67 LTR ERVL 431 550 -7 612 297 31 19 chrX 38456206 38456462 -124143468 - MIR SINE MIR -2 260 2 287 309 10 10 chrX 38457104 38457201 -124142729 - L2 LINE L2 -12 3301 3205 490 236 121 25 chrX 38457234 38457454 -124142476 - MLT1L LTR MaLR -27 565 311 937 303 177 29 chrX 38457519 38458106 -124141824 - L2 LINE L2 -616 2698 2025 432 278 17 9 chrX 38458207 38458322 -124141608 + MER5B DNA MER1_type 24 139 -39 6537 136 8 22 chrX 38458324 38459576 -124140354 + L1MC1 LINE L1 5097 6331 -2 186 43 0 0 chrX 38459576 38459599 -124140331 + (CA)n Simple_repeat Simple_repeat 2 24 0 2889 9 0 9 chrX 38459822 38460143 -124139787 - AluYb8 SINE Alu 0 318 1 200 324 44 0 chrX 38460735 38460803 -124139127 + L2 LINE L2 1953 2023 -1291 268 333 39 8 chrX 38461097 38461226 -124138704 + MIR SINE MIR 60 192 -70 5205 121 45 26 chrX 38461982 38462347 -124137583 + L1PA16 LINE L1 5111 5468 -698 2298 82 0 26 chrX 38462347 38462650 -124137280 + AluSp SINE Alu 1 295 -18 5205 121 45 26 chrX 38462650 38463314 -124136616 + L1PA16 LINE L1 5468 6157 -9 1474 156 33 16 chrX 38463349 38463593 -124136337 + AluJo SINE Alu 40 287 -25 1198 267 220 29 chrX 38464550 38465387 -124134543 - L2 LINE L2 -3 3310 2339 1100 284 97 26 chrX 38466033 38466487 -124133443 - L2 LINE L2 -725 2589 2104 22 0 0 0 chrX 38466798 38466820 -124133110 + AT_rich Low_complexity Low_complexity 1 22 0 5360 42 8 0 chrX 38467338 38467988 -124131942 + L1PA5 LINE L1 5495 6149 -5 21 36 0 0 chrX 38467994 38468022 -124131908 + AT_rich Low_complexity Low_complexity 1 28 0 328 267 47 63 chrX 38468314 38468505 -124131425 + MLT1J2 LTR MaLR 263 450 0 968 234 172 25 chrX 38468642 38468967 -124130963 - MLT1G3 LTR MaLR -4 526 154 2879 177 42 31 chrX 38469396 38469890 -124130040 + MLT2B3 LTR ERVL 2 504 -50 213 39 0 0 chrX 38469890 38469916 -124130014 + (TC)n Simple_repeat Simple_repeat 2 27 0 2879 177 42 31 chrX 38469916 38469968 -124129962 + MLT2B3 LTR ERVL 504 554 0 523 286 33 24 chrX 38470103 38470316 -124129614 + LTR16A1 LTR ERVL 157 371 -86 806 169 114 45 chrX 38470317 38470518 -124129412 - AluJb SINE Alu -11 301 87 289 288 68 46 chrX 38470915 38471266 -124128664 + L1ME4a LINE L1 3595 3953 -2193 657 320 76 25 chrX 38471592 38472026 -124127904 + L1ME4a LINE L1 4378 4833 -1313 22 0 0 0 chrX 38472074 38472096 -124127834 + AT_rich Low_complexity Low_complexity 1 22 0 2879 177 42 31 chrX 38472205 38472257 -124127673 - MLT2B3 LTR ERVL 0 554 504 231 36 0 0 chrX 38472257 38472285 -124127645 + (GA)n Simple_repeat Simple_repeat 2 29 0 2879 177 42 31 chrX 38472285 38472779 -124127151 - MLT2B3 LTR ERVL -50 504 2 225 0 0 0 chrX 38473195 38473220 -124126710 + (TC)n Simple_repeat Simple_repeat 1 25 0 933 215 188 27 chrX 38473230 38473528 -124126402 + MLT1G3 LTR MaLR 170 515 -15 * 1314 181 26 26 chrX 38473524 38473790 -124126140 - MSTD LTR MaLR -128 268 3 2453 78 0 3 chrX 38473820 38474128 -124125802 + AluY SINE Alu 1 307 -4 21 0 0 0 chrX 38474301 38474322 -124125608 + AT_rich Low_complexity Low_complexity 1 21 0 493 282 81 35 chrX 38474390 38474759 -124125171 + L1ME4a LINE L1 5391 5776 -345 6101 36 0 1 chrX 38474847 38475605 -124124325 - L1PA5 LINE L1 -6 6148 5392 327 223 165 33 chrX 38475636 38475909 -124124021 + L1ME4a LINE L1 5808 6116 -5 358 200 15 0 chrX 38476429 38476494 -124123436 - L2 LINE L2 0 3313 3248 2193 131 78 0 chrX 38476561 38476921 -124123009 + MLT1B LTR MaLR 3 390 0 1851 133 29 48 chrX 38477280 38477656 -124122274 - THE1C LTR MaLR 0 375 7 31 0 0 0 chrX 38478015 38478046 -124121884 + AT_rich Low_complexity Low_complexity 1 31 0 256 336 44 0 chrX 38479129 38479242 -124120688 + L2 LINE L2 1918 2035 -1279 2327 72 3 0 chrX 38480226 38480519 -124119411 - AluY SINE Alu -17 294 1 1045 123 0 0 chrX 38481597 38481751 -124118179 + L1MC1 LINE L1 6180 6333 0 1275 165 27 0 chrX 38481792 38482016 -124117914 + L1MB5 LINE L1 5945 6174 0 2085 161 129 19 chrX 38482194 38482622 -124117308 + MLT2B1 LTR ERVL 1 485 -35 315 0 0 0 chrX 38482622 38482657 -124117273 + (TG)n Simple_repeat Simple_repeat 2 36 0 2085 161 129 19 chrX 38482657 38482693 -124117237 + MLT2B1 LTR ERVL 485 516 -4 237 33 0 0 chrX 38484069 38484099 -124115831 + (CA)n Simple_repeat Simple_repeat 1 30 0 1064 212 135 50 chrX 38484760 38485161 -124114769 - MLT1D LTR MaLR -2 503 100 1392 194 83 17 chrX 38485161 38485521 -124114409 - MER45B DNA AcHobo 0 1040 657 371 167 15 0 chrX 38485520 38485586 -124114344 - MLT1D LTR MaLR -427 78 12 * 232 296 0 28 chrX 38485659 38485730 -124114200 - MLT1H1 LTR MaLR -299 256 188 231 214 36 48 chrX 38485829 38485913 -124114017 - MLT1H1 LTR MaLR -459 83 1 5535 160 19 35 chrX 38486018 38487169 -124112761 + L1MA7 LINE L1 4195 5363 -928 1907 159 91 3 chrX 38487169 38487533 -124112397 + MSTD LTR MaLR 1 396 0 5535 160 19 35 chrX 38487533 38488366 -124111564 + L1MA7 LINE L1 5363 6159 -132 424 70 12 58 chrX 38488366 38488440 -124111490 + L1PB2 LINE L1 6065 6146 -5 5535 160 19 35 chrX 38488440 38488452 -124111478 + L1MA7 LINE L1 6159 6170 -121 2255 102 0 16 chrX 38488457 38488772 -124111158 + AluSg SINE Alu 1 310 0 735 112 0 16 chrX 38488933 38489058 -124110872 + L1MA7 LINE L1 6165 6287 -4 6139 95 49 2 chrX 38489088 38490251 -124109679 - L1PA13 LINE L1 0 6163 4980 489 258 213 13 chrX 38490328 38490553 -124109377 - MLT1J LTR MaLR -241 270 1 1906 179 21 74 chrX 38491011 38491536 -124108394 - MLT1D LTR MaLR -8 497 1 696 144 0 0 chrX 38493527 38493652 -124106278 + L1P LINE L1 4728 4852 -1294 1686 147 68 49 chrX 38493674 38494042 -124105888 + THE1C LTR MaLR 1 375 0 344 343 66 15 chrX 38494228 38494365 -124105565 - L2 LINE L2 -610 2704 2561 503 291 124 12 chrX 38494734 38494992 -124104938 + LTR16A1 LTR ERVL 171 457 0 363 298 146 22 chrX 38495212 38495390 -124104540 + MIR SINE MIR 63 262 0 2529 50 3 3 chrX 38495409 38495709 -124104221 + AluY SINE Alu 1 300 -11 5310 188 27 4 chrX 38498050 38499063 -124100867 - MER45B DNA AcHobo -4 1036 1 3234 105 58 12 chrX 38499551 38500067 -124099863 - L1MB2 LINE L1 -3 6168 5629 504 319 12 24 chrX 38500592 38500758 -124099172 - MIR3 SINE MIR 0 208 45 651 290 40 10 chrX 38502328 38502528 -124097402 - MIR SINE MIR -40 222 17 562 264 162 8 chrX 38503907 38504104 -124095826 + MIR SINE MIR 37 262 0 186 303 0 53 chrX 38504390 38504466 -124095464 - L2 LINE L2 -182 3090 3019 33 25 0 0 chrX 38504872 38504912 -124095018 + AT_rich Low_complexity Low_complexity 1 40 0 528 312 54 65 chrX 38505060 38505429 -124094501 + MLT1K LTR MaLR 14 378 -210 365 326 57 21 chrX 38505936 38506129 -124093801 + MIR SINE MIR 51 250 -12 273 57 0 0 chrX 38506133 38506168 -124093762 + (CAT)n Simple_repeat Simple_repeat 1 35 0 2232 60 0 0 chrX 38506350 38506617 -124093313 - AluY SINE Alu -1 310 44 2279 175 37 3 chrX 38506716 38507093 -124092837 + MLT1B LTR MaLR 1 390 0 2327 85 0 25 chrX 38508422 38508740 -124091190 - AluSg SINE Alu 0 310 1 217 225 0 0 chrX 38508848 38508888 -124091042 + (CAG)n Simple_repeat Simple_repeat 3 42 0 285 29 0 0 chrX 38511407 38511441 -124088489 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1097 137 69 0 chrX 38511679 38511854 -124088076 + MER5A DNA MER1_type 3 189 0 198 370 0 19 chrX 38513012 38513066 -124086864 + L2 LINE L2 3129 3181 -91 1183 213 127 94 chrX 38513435 38514009 -124085921 - MLT1G1 LTR MaLR 0 595 3 207 0 0 0 chrX 38514731 38514754 -124085176 + (A)n Simple_repeat Simple_repeat 1 23 0 1854 189 38 30 chrX 38516487 38516857 -124083073 + MLT1A2 LTR MaLR 2 374 0 333 0 0 0 chrX 38517790 38517827 -124082103 + (CA)n Simple_repeat Simple_repeat 2 38 0 884 289 101 37 chrX 38519160 38519645 -124080285 + LTR33 LTR ERVL 6 521 0 221 341 101 16 chrX 38520756 38520885 -124079045 + MIR3 SINE MIR 44 183 -25 712 261 32 74 chrX 38520973 38521361 -124078569 - MLT1H LTR MaLR -32 523 52 1914 244 53 41 chrX 38523205 38523718 -124076212 - MLT1E LTR MaLR 0 593 75 642 292 152 15 chrX 38523816 38524152 -124075778 - MARNA DNA Mariner -41 545 164 3557 72 5 0 chrX 38524898 38525343 -124074587 + MER41A LTR ERV1 1 447 -107 6533 130 4 5 chrX 38525355 38526779 -124073151 - L1PB1 LINE L1 -3 6148 4726 714 75 0 0 chrX 38526779 38526872 -124073058 + MER41B LTR ERV1 543 635 0 293 269 123 70 chrX 38527167 38527567 -124072363 + MLT1G LTR MaLR 119 590 0 1199 243 127 26 chrX 38527943 38528400 -124071530 + LTR33 LTR ERVL 3 505 -16 1702 153 21 28 chrX 38528582 38528864 -124071066 + AluJb SINE Alu 1 280 -32 450 154 0 0 chrX 38529766 38529844 -124070086 + GA-rich Low_complexity Low_complexity 3 80 0 2050 100 0 4 chrX 38530038 38530318 -124069612 - AluY SINE Alu -6 305 27 22 0 0 0 chrX 38530394 38530416 -124069514 + AT_rich Low_complexity Low_complexity 1 22 0 15381 81 21 14 chrX 38530695 38533422 -124066508 - L1PA7 LINE L1 -233 5921 3173 1839 64 0 0 chrX 38533422 38533639 -124066291 + L1PA7 LINE L1 5931 6150 -4 1111 158 23 56 chrX 38533685 38533900 -124066030 + AluJo SINE Alu 85 292 -20 884 218 32 11 chrX 38535202 38535390 -124064540 + MER63A DNA MER1_type 1 192 -18 591 324 107 28 chrX 38535490 38535808 -124064122 + L2 LINE L2 2925 3267 -5 476 373 22 4 chrX 38536003 38536231 -124063699 + MIR SINE MIR 29 260 -2 202 299 10 31 chrX 38536531 38536628 -124063302 + CT-rich Low_complexity Low_complexity 3 97 0 745 299 37 0 chrX 38537877 38538064 -124061866 + MER91A DNA MER1_type 2 195 -1 2768 99 23 3 chrX 38538107 38538491 -124061439 + L1PA11 LINE L1 5783 6174 0 22 0 0 0 chrX 38539597 38539619 -124060311 + AT_rich Low_complexity Low_complexity 1 22 0 3533 175 12 3 chrX 38539620 38540221 -124059709 - L1MB2 LINE L1 -9 6162 5557 1994 113 11 11 chrX 38540248 38540532 -124059398 - AluSx SINE Alu -28 284 1 255 291 92 7 chrX 38540644 38540785 -124059145 - L1MC5 LINE L1 -37 7924 7772 26 0 0 0 chrX 38540834 38540860 -124059070 + AT_rich Low_complexity Low_complexity 1 26 0 35 54 0 0 chrX 38544945 38545001 -124054929 + AT_rich Low_complexity Low_complexity 1 56 0 5449 50 2 2 chrX 38545053 38545676 -124054254 - L1PA6 LINE L1 -5 6149 5527 235 250 95 69 chrX 38546014 38546130 -124053800 + L2 LINE L2 3194 3312 -1 323 222 0 93 chrX 38546167 38546275 -124053655 + MIR SINE MIR 139 236 -26 544 314 49 12 chrX 38546470 38546675 -124053255 + MIR SINE MIR 5 222 -40 2477 174 40 26 chrX 38546675 38546916 -124053014 - MSTB LTR MaLR 0 426 174 2377 74 0 0 chrX 38546916 38547241 -124052689 + AluY SINE Alu 1 325 0 2477 174 40 26 chrX 38547241 38547418 -124052512 - MSTB LTR MaLR -252 174 1 544 314 49 12 chrX 38547418 38547457 -124052473 + MIR SINE MIR 222 258 -4 253 304 64 16 chrX 38547846 38547971 -124051959 - MLT1H LTR MaLR -396 153 23 441 257 54 124 chrX 38547976 38548217 -124051713 + L2 LINE L2 3037 3260 -12 623 165 0 0 chrX 38549608 38549709 -124050221 - MER5A DNA MER1_type -84 105 5 2564 131 116 0 chrX 38550092 38550496 -124049434 - LTR47A LTR ERVL -1 451 1 26 0 0 0 chrX 38550795 38550821 -124049109 + AT_rich Low_complexity Low_complexity 1 26 0 221 129 0 81 chrX 38551719 38551781 -124048149 + (TGGGGG)n Simple_repeat Simple_repeat 4 60 0 284 336 44 0 chrX 38552275 38552388 -124047542 - L2 LINE L2 -1 3271 3154 830 193 122 54 chrX 38553291 38553313 -124046617 + Charlie7 DNA MER1_type 1597 1616 -996 1072 99 17 0 chrX 38553313 38553485 -124046445 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2258 53 0 18 chrX 38553487 38553769 -124046161 - AluSc SINE Alu -32 277 1 830 193 122 54 chrX 38553769 38554038 -124045892 + Charlie7 DNA MER1_type 1616 1911 -701 3053 103 14 21 chrX 38554038 38554473 -124045457 + L1PA16 LINE L1 5735 6166 0 1161 220 129 46 chrX 38555359 38555544 -124044386 + Charlie7 DNA MER1_type 1898 2066 -546 2283 152 103 77 chrX 38555544 38556051 -124043879 + MLT2B1 LTR ERVL 1 520 0 1161 220 129 46 chrX 38556051 38556361 -124043569 + Charlie7 DNA MER1_type 2066 2434 -178 6915 182 13 11 chrX 38556370 38558852 -124041078 + L1MC1 LINE L1 3831 6316 -17 355 201 121 27 chrX 38559002 38559134 -124040796 + Charlie7 DNA MER1_type 2384 2533 -79 363 44 0 0 chrX 38559134 38559179 -124040751 + (TG)n Simple_repeat Simple_repeat 2 46 0 355 201 121 27 chrX 38559179 38559195 -124040735 + Charlie7 DNA MER1_type 2533 2546 -66 2243 94 0 0 chrX 38559200 38559486 -124040444 - AluSx SINE Alu -26 286 1 570 345 48 33 chrX 38559561 38559894 -124040036 - LTR16C LTR ERVL -9 482 145 2639 27 0 0 chrX 38560189 38560485 -124039445 - AluY SINE Alu -15 296 1 2173 92 17 3 chrX 38560485 38560779 -124039151 - L1PA15 LINE L1 0 6165 5868 421 265 73 64 chrX 38560796 38561020 -124038910 + MIR SINE MIR 29 249 -13 2543 200 80 29 chrX 38561356 38562085 -124037845 - L1MC5 LINE L1 -36 7925 7160 1706 166 8 0 chrX 38562853 38563112 -124036818 + Tigger7 DNA MER2_type 4 264 -469 628 152 0 10 chrX 38563118 38563217 -124036713 + Tigger7 DNA MER2_type 2394 2491 0 723 211 103 16 chrX 38563553 38563747 -124036183 - MIR SINE MIR -44 218 8 196 270 48 0 chrX 38564595 38564658 -124035272 - L3b LINE CR1 -166 1417 1352 1579 182 44 32 chrX 38565228 38565260 -124034670 - MLT2B1 LTR ERVL -6 514 484 602 88 0 11 chrX 38565260 38565351 -124034579 + (TG)n Simple_repeat Simple_repeat 2 91 0 1579 182 44 32 chrX 38565351 38565780 -124034150 - MLT2B1 LTR ERVL -36 484 1 1362 226 26 26 chrX 38566226 38566566 -124033364 + L1ME2 LINE L1 5824 6163 -1 255 322 0 11 chrX 38566579 38566669 -124033261 + MIR SINE MIR 169 257 -5 5279 43 0 2 chrX 38567251 38567851 -124032079 - L1PA5 LINE L1 -2 6152 5554 497 219 0 31 chrX 38567964 38568060 -124031870 - MER5A DNA MER1_type -83 106 14 225 154 0 0 chrX 38568190 38568229 -124031701 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chrX 38568737 38568762 -124031168 + (GGA)n Simple_repeat Simple_repeat 1 25 0 394 306 43 48 chrX 38568947 38569133 -124030797 + MIR SINE MIR 7 191 -71 1492 147 0 14 chrX 38570055 38570273 -124029657 - AluJb SINE Alu -17 295 81 1183 221 32 98 chrX 38570274 38570745 -124029185 - HAL1 LINE L1 -1330 1177 738 536 178 11 0 chrX 38571011 38571101 -124028829 - MER5A DNA MER1_type -2 187 97 186 71 0 0 chrX 38571301 38571329 -124028601 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 1960 101 0 89 chrX 38571329 38571645 -124028285 - AluSq SINE Alu -25 288 1 1025 158 44 6 chrX 38571711 38571894 -124028036 - L1PA16 LINE L1 -14 6152 5963 915 239 41 21 chrX 38571938 38572279 -124027651 + MLT1G LTR MaLR 45 437 -93 281 343 19 9 chrX 38572385 38572493 -124027437 + L2 LINE L2 3180 3288 -25 840 276 46 13 chrX 38572618 38572857 -124027073 + MIR SINE MIR 13 259 -3 344 229 138 28 chrX 38573134 38573243 -124026687 + MER5A DNA MER1_type 35 155 -34 211 195 24 0 chrX 38573882 38573923 -124026007 + CT-rich Low_complexity Low_complexity 4 45 0 191 36 36 0 chrX 38573923 38573951 -124025979 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 246 289 26 0 chrX 38573952 38574028 -124025902 - L2 LINE L2 -2 3270 3193 1174 115 0 0 chrX 38574384 38574540 -124025390 - AluSg/x SINE Alu -10 302 147 1039 173 20 25 chrX 38574823 38575020 -124024910 - MER20 DNA MER1_type -1 218 23 379 267 7 52 chrX 38575044 38575179 -124024751 - MER5B DNA MER1_type -14 164 36 2170 246 35 9 chrX 38575777 38576321 -124023609 + L1ME3A LINE L1 5610 6167 -3 27 0 0 0 chrX 38577443 38577470 -124022460 + AT_rich Low_complexity Low_complexity 1 27 0 181 352 84 0 chrX 38577470 38577541 -124022389 - L2 LINE L2 -50 3222 3146 234 158 0 0 chrX 38577545 38577583 -124022347 - MLT1G1 LTR MaLR -7 583 546 1721 183 45 66 chrX 38577614 38577992 -124021938 - MLT1A2 LTR MaLR -1 373 4 2337 128 12 52 chrX 38578005 38578410 -124021520 - MLT1B LTR MaLR -1 389 1 601 194 19 0 chrX 38578411 38578514 -124021416 + MER81 DNA DNA 10 114 0 978 276 60 82 chrX 38578521 38579042 -124020888 - MLT1G1 LTR MaLR -66 529 21 2506 126 34 3 chrX 38579049 38579430 -124020500 - L1MB2 LINE L1 -3 6168 5776 199 250 47 31 chrX 38579614 38579678 -124020252 - L2 LINE L2 -346 2968 2904 278 348 71 0 chrX 38579686 38579798 -124020132 - MER91C DNA MER1_type -20 120 1 618 285 128 25 chrX 38580175 38580625 -124019305 - L2 LINE L2 -104 3209 2720 257 279 29 29 chrX 38581062 38581166 -124018764 + LTR16C LTR ERVL 328 431 -60 883 313 50 18 chrX 38581216 38581555 -124018375 - L2 LINE L2 -591 2723 2374 182 234 0 21 chrX 38581558 38581605 -124018325 - L2 LINE L2 0 3313 3268 539 259 65 99 chrX 38581614 38581968 -124017962 + MER34 LTR ERV1 25 356 -186 2347 82 10 0 chrX 38581968 38582261 -124017669 + AluSc SINE Alu 1 296 -13 539 259 65 99 chrX 38582261 38582442 -124017488 + MER34 LTR ERV1 356 542 0 197 286 143 0 chrX 38582592 38582683 -124017247 - L2 LINE L2 -215 3057 2954 226 324 50 58 chrX 38582905 38583146 -124016784 + L2 LINE L2 2927 3165 -107 209 108 40 122 chrX 38583916 38583990 -124015940 + A-rich Low_complexity Low_complexity 3 70 0 225 143 82 0 chrX 38584052 38584101 -124015829 + L1MC4 LINE L1 6653 6705 -1337 385 299 133 29 chrX 38584987 38585228 -124014702 + L3b LINE CR1 1165 1430 -153 244 243 252 0 chrX 38585397 38585504 -124014426 + MIR SINE MIR 17 150 -112 * 809 241 47 105 chrX 38585499 38585841 -124014089 - L2 LINE L2 -13 3300 2991 1876 183 61 44 chrX 38585841 38586300 -124013630 + MLT1C LTR MaLR 1 467 0 809 241 47 105 chrX 38586300 38586425 -124013505 - L2 LINE L2 -322 2991 2860 302 320 0 0 chrX 38586427 38586505 -124013425 - LTR16A LTR ERVL -313 137 60 2010 148 119 18 chrX 38586536 38586922 -124013008 + MSTA LTR MaLR 4 428 0 1179 279 91 8 chrX 38586957 38587340 -124012590 - L2 LINE L2 -668 2646 2232 3357 211 60 20 chrX 38587345 38587604 -124012326 - L1MC4 LINE L1 -743 5797 5550 2951 90 0 6 chrX 38587604 38587970 -124011960 - THE1B LTR MaLR 0 364 1 3357 211 60 20 chrX 38587970 38588904 -124011026 - L1MC4 LINE L1 -990 5550 5325 2071 138 43 54 chrX 38588904 38589273 -124010657 - MLT1A1 LTR MaLR 0 365 1 3357 211 60 20 chrX 38589273 38589322 -124010608 - L1MC4 LINE L1 -1215 5325 5279 1572 219 56 57 chrX 38589346 38589886 -124010044 - L1MC4 LINE L1 -5063 1467 929 374 279 48 34 chrX 38589964 38590197 -124009733 - L1MC4 LINE L1 -5585 945 703 345 359 25 12 chrX 38590598 38590812 -124009118 - L1MC4 LINE L1 -5904 626 34 866 224 142 12 chrX 38590898 38591144 -124008786 - L2 LINE L2 -1118 2196 1919 725 275 16 5 chrX 38591447 38591636 -124008294 + MIR SINE MIR 24 214 -48 279 299 16 118 chrX 38592141 38592328 -124007602 + MIR3 SINE MIR 17 184 -24 275 319 8 42 chrX 38592335 38592454 -124007476 - L2 LINE L2 -3 3269 3155 24 0 0 0 chrX 38592609 38592633 -124007297 + AT_rich Low_complexity Low_complexity 1 24 0 291 263 140 9 chrX 38594548 38594662 -124005268 + MIR3 SINE MIR 48 176 -32 1038 182 16 5 chrX 38596624 38596811 -124003119 - MER5A DNA MER1_type 0 189 1 1577 259 71 17 chrX 38596992 38597455 -124002475 - LTR16C LTR ERVL -3 488 1 884 158 0 8 chrX 38599418 38599545 -124000385 + FLAM_A SINE Alu 2 127 -6 21 0 0 0 chrX 38599545 38599566 -124000364 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 38599598 38599620 -124000310 + AT_rich Low_complexity Low_complexity 1 22 0 1052 167 10 56 chrX 38600184 38600382 -123999548 + MER5A DNA MER1_type 1 189 0 194 259 0 37 chrX 38600675 38600729 -123999201 + L2 LINE L2 3209 3260 -12 1588 180 0 30 chrX 38600791 38601116 -123998814 + AluJo SINE Alu 1 316 0 517 265 144 0 chrX 38601199 38601356 -123998574 - MER5A DNA MER1_type -3 186 4 237 244 343 50 chrX 38601364 38601565 -123998365 + L3 LINE CR1 1140 1399 -178 918 281 89 58 chrX 38601776 38602504 -123997426 - L1ME4a LINE L1 -56 6065 5310 2024 136 0 13 chrX 38602729 38603039 -123996891 - AluJb SINE Alu -6 306 1 886 207 18 0 chrX 38603177 38603341 -123996589 - FRAM SINE Alu -9 167 1 431 172 78 99 chrX 38603360 38603435 -123996495 - Charlie7 DNA MER1_type -191 2421 2346 1453 31 0 0 chrX 38603435 38603596 -123996334 - L1PA3 LINE L1 0 6155 5995 431 172 78 99 chrX 38603596 38603712 -123996218 - Charlie7 DNA MER1_type -266 2346 2234 1243 234 112 50 chrX 38603723 38604322 -123995608 - L1MC4 LINE L1 -1 8041 7406 2451 93 0 0 chrX 38604344 38604657 -123995273 + AluSp SINE Alu 1 313 0 3667 206 70 10 chrX 38604664 38605649 -123994281 - L1ME1 LINE L1 -4 6162 5112 386 159 156 0 chrX 38605633 38605775 -123994155 - L1MEc LINE L1 -5259 1137 953 * 242 317 126 6 chrX 38606147 38606497 -123993433 - L1ME1 LINE L1 -2034 4112 3721 524 273 62 8 chrX 38606593 38606721 -123993209 + MIR SINE MIR 7 141 -121 21 57 0 0 chrX 38606817 38606852 -123993078 + AT_rich Low_complexity Low_complexity 1 35 0 2303 85 3 19 chrX 38606895 38607211 -123992719 - AluSq SINE Alu -2 311 1 1932 207 131 9 chrX 38607413 38607963 -123991967 - L1ME1 LINE L1 -197 5969 5353 1232 224 88 5 chrX 38607959 38608334 -123991596 - L1ME1 LINE L1 -2017 4129 3724 * 557 169 45 11 chrX 38608667 38608824 -123991106 + L1MC4 LINE L1 7892 7995 0 2405 109 0 0 chrX 38608849 38609160 -123990770 + AluSx SINE Alu 1 311 -1 911 204 0 0 chrX 38609161 38609362 -123990568 - L1ME1 LINE L1 -2415 3731 3531 503 172 35 0 chrX 38609368 38609484 -123990446 - L1M4 LINE L1 -1471 4675 4556 2651 162 52 16 chrX 38609550 38610094 -123989836 - L1MD1 LINE L1 0 6311 5749 2383 205 94 9 chrX 38610095 38611150 -123988780 - L1MD1 LINE L1 -598 5713 4593 2113 171 51 2 chrX 38611165 38611579 -123988351 - L1MB5 LINE L1 -9 6165 5732 3885 258 59 31 chrX 38611616 38611712 -123988218 - L1MD1 LINE L1 -4754 1642 1550 2611 27 10 0 chrX 38611712 38612005 -123987925 - AluY SINE Alu -13 298 3 3885 258 59 31 chrX 38612005 38613472 -123986458 - L1MD1 LINE L1 -4846 1550 35 376 345 52 40 chrX 38613888 38614216 -123985714 + LTR16C LTR ERVL 150 481 -10 278 270 0 32 chrX 38614381 38614444 -123985486 - L2 LINE L2 -10 3262 3202 639 170 30 44 chrX 38614585 38614720 -123985210 - FLAM_C SINE Alu 0 133 1 428 245 108 22 chrX 38614734 38614873 -123985057 - MLT1E1 LTR MaLR -503 151 1 4330 249 59 15 chrX 38614873 38615479 -123984451 + L1ME LINE L1 534 1112 -5284 414 0 0 0 chrX 38615479 38615525 -123984405 + (CA)n Simple_repeat Simple_repeat 1 46 0 4330 249 59 15 chrX 38615525 38615642 -123984288 + L1ME LINE L1 1112 1222 -5174 2449 88 3 0 chrX 38615642 38615948 -123983982 + AluSq SINE Alu 1 307 -6 4330 249 59 15 chrX 38615948 38616718 -123983212 + L1ME LINE L1 1222 2094 -4302 242 216 0 0 chrX 38616730 38616781 -123983149 + MER34 LTR ERV1 25 75 -467 1272 225 3 39 chrX 38616868 38617202 -123982728 + L1ME LINE L1 3595 3916 -2299 4373 162 31 5 chrX 38617211 38618052 -123981878 + L1MB5 LINE L1 5312 6174 0 * 4640 204 37 41 chrX 38618051 38619429 -123980501 + L1ME LINE L1 3901 5272 -943 2116 22 15 0 chrX 38619428 38619700 -123980230 - L1PA4 LINE L1 -790 5356 5081 * 7163 19 0 0 chrX 38619700 38620526 -123979404 + L1PA4 LINE L1 5326 6153 -2 376 153 0 24 chrX 38620529 38620614 -123979316 + L1MDb LINE L1 1314 1396 -5013 279 226 5 21 chrX 38620619 38620753 -123979177 + L1ME LINE L1 5257 5392 -843 1763 170 39 12 chrX 38620753 38621088 -123978842 + MER2 DNA MER2_type 1 344 0 279 226 5 21 chrX 38621088 38621142 -123978788 + L1ME LINE L1 5392 5562 -673 2133 159 87 7 chrX 38621142 38621717 -123978213 - MER39 LTR ERV1 0 707 13 2372 134 14 21 chrX 38621717 38622031 -123977899 - MER41B LTR ERV1 0 635 323 1961 128 67 28 chrX 38622031 38622390 -123977540 - THE1C LTR MaLR -2 373 1 2372 134 14 21 chrX 38622390 38622493 -123977437 - MER41B LTR ERV1 -312 323 221 2321 59 0 0 chrX 38622493 38622782 -123977148 - L1PA5 LINE L1 -2 6152 5864 1509 113 4 0 chrX 38622801 38623032 -123976898 - MER41B LTR ERV1 -403 232 1 465 130 122 26 chrX 38623125 38623240 -123976690 + L1MA10 LINE L1 6207 6332 -2 1048 312 133 20 chrX 38623274 38623927 -123976003 + L2 LINE L2 2157 2883 -431 294 95 0 0 chrX 38627833 38627875 -123972055 + (TG)n Simple_repeat Simple_repeat 2 43 0 1858 157 10 16 chrX 38629123 38629428 -123970502 - AluSx SINE Alu -1 311 9 222 258 15 15 chrX 38629570 38629636 -123970294 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 451 339 108 34 chrX 38629793 38630399 -123969531 - L2 LINE L2 -156 3116 2465 2251 146 29 54 chrX 38630399 38630878 -123969052 + MLT1C LTR MaLR 1 467 0 451 339 108 34 chrX 38630878 38630913 -123969017 - L2 LINE L2 -807 2465 2434 2066 177 67 14 chrX 38630930 38631366 -123968564 - MLT1C LTR MaLR -2 465 7 269 365 45 36 chrX 38631413 38631635 -123968295 - L2 LINE L2 -922 2392 2169 854 285 5 24 chrX 38631758 38632022 -123967908 - MIR SINE MIR -3 259 1 279 0 0 0 chrX 38632344 38632375 -123967555 + (CA)n Simple_repeat Simple_repeat 2 32 0 1192 261 60 70 chrX 38633725 38634038 -123965892 + LTR16C LTR ERVL 1 316 -175 1652 174 3 11 chrX 38634038 38634320 -123965610 + AluJo SINE Alu 1 280 -32 234 0 0 0 chrX 38634321 38634347 -123965583 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 1192 261 60 70 chrX 38634347 38634513 -123965417 + LTR16C LTR ERVL 315 477 -14 268 253 89 13 chrX 38636017 38636096 -123963834 + MIR SINE MIR 106 190 -72 1074 247 103 56 chrX 38636983 38637469 -123962461 + LTR33 LTR ERVL 1 509 -12 942 246 38 0 chrX 38638651 38638887 -123961043 + LTR16A LTR ERVL 206 450 0 638 274 76 5 chrX 38639499 38639707 -123960223 - MIR SINE MIR 0 262 41 279 237 0 0 chrX 38639866 38639925 -123960005 - MER112 DNA MER1_type -21 239 181 215 258 45 0 chrX 38639926 38639992 -123959938 + A-rich Low_complexity Low_complexity 2 70 0 367 230 58 29 chrX 38639995 38640134 -123959796 - MER112 DNA MER1_type -104 156 14 311 329 95 56 chrX 38640194 38640258 -123959672 + L1MC4a LINE L1 5709 5769 -2039 2186 116 0 7 chrX 38640258 38640552 -123959378 + AluSg SINE Alu 1 292 -18 311 329 95 56 chrX 38640552 38640718 -123959212 + L1MC4a LINE L1 5769 5948 -1860 1007 263 122 20 chrX 38640836 38641288 -123958642 - LTR33 LTR ERVL 0 521 24 443 275 99 0 chrX 38641598 38641729 -123958201 + MIR SINE MIR 118 261 -1 2183 117 0 0 chrX 38641759 38642041 -123957889 + AluSx SINE Alu 1 282 -30 189 301 130 88 chrX 38642173 38642558 -123957372 + L2 LINE L2 2829 3229 -43 370 247 6 24 chrX 38642613 38642724 -123957206 - MIR SINE MIR -93 115 5 23 33 0 0 chrX 38643443 38643473 -123956457 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 38643649 38643674 -123956256 + AT_rich Low_complexity Low_complexity 1 25 0 467 260 49 16 chrX 38643783 38643906 -123956024 + L2 LINE L2 3176 3302 -11 262 264 176 7 chrX 38644130 38644403 -123955527 + L1ME4a LINE L1 5800 6118 -3 1837 233 119 41 chrX 38645241 38645349 -123954581 - L2 LINE L2 -465 2849 2751 1932 150 19 41 chrX 38645349 38645716 -123954214 + MLT1A1 LTR MaLR 5 363 -2 1837 233 119 41 chrX 38645716 38646239 -123953691 - L2 LINE L2 -563 2751 2169 1450 274 42 35 chrX 38646398 38646879 -123953051 + L2 LINE L2 2482 2965 -349 531 271 73 98 chrX 38647517 38647871 -123952059 + HAL1 LINE L1 42 382 -2125 2628 46 0 0 chrX 38647871 38648173 -123951757 + AluY SINE Alu 3 304 -7 531 271 73 98 chrX 38648173 38648308 -123951622 + HAL1 LINE L1 382 519 -1988 669 235 147 51 chrX 38648554 38648882 -123951048 + HAL1 LINE L1 860 1155 -1352 1928 144 16 16 chrX 38648882 38649194 -123950736 - AluJo SINE Alu 0 312 1 669 235 147 51 chrX 38649194 38649335 -123950595 + HAL1 LINE L1 1155 1281 -1226 282 56 0 0 chrX 38649335 38649371 -123950559 + (CA)n Simple_repeat Simple_repeat 2 37 0 669 235 147 51 chrX 38649371 38649453 -123950477 + HAL1 LINE L1 1281 1465 -1042 370 279 64 75 chrX 38649471 38649736 -123950194 + HAL1 LINE L1 2246 2507 0 651 279 88 30 chrX 38650250 38650612 -123949318 + MARNA DNA Mariner 191 573 -13 187 188 14 14 chrX 38651444 38651513 -123948417 + GA-rich Low_complexity Low_complexity 2 70 0 216 292 18 71 chrX 38652025 38652138 -123947792 - MIR SINE MIR -136 126 20 632 259 38 0 chrX 38653751 38653909 -123946021 - MIR SINE MIR -29 233 70 184 333 8 89 chrX 38654148 38654385 -123945545 - L2 LINE L2 -228 3044 2827 204 163 0 41 chrX 38654456 38654505 -123945425 + A-rich Low_complexity Low_complexity 3 49 0 285 354 54 40 chrX 38654765 38654988 -123944942 - L2 LINE L2 -536 2778 2553 570 353 4 13 chrX 38655056 38655291 -123944639 + MIR SINE MIR 1 233 -29 1404 110 0 43 chrX 38657537 38657746 -123942184 + AluSg/x SINE Alu 80 279 -33 360 0 0 0 chrX 38657748 38657788 -123942142 + (CA)n Simple_repeat Simple_repeat 1 40 0 719 214 195 14 chrX 38659518 38659733 -123940197 - MIR SINE MIR -3 259 6 1981 134 14 0 chrX 38660078 38660391 -123939539 + AluSx SINE Alu 1 312 0 1310 150 11 115 chrX 38660440 38660726 -123939204 + AluJo SINE Alu 40 295 -17 316 267 95 9 chrX 38660778 38660894 -123939036 + L1ME4a LINE L1 5901 6026 -95 2368 173 57 49 chrX 38661552 38662147 -123937783 - L1MB5 LINE L1 -8 6166 5567 313 370 8 24 chrX 38663502 38663629 -123936301 + MIR SINE MIR 20 144 -118 1248 242 57 84 chrX 38663653 38664059 -123935871 + L2 LINE L2 2667 3043 -270 2464 92 0 0 chrX 38664059 38664363 -123935567 + AluSq SINE Alu 1 304 -9 1248 242 57 84 chrX 38664363 38664626 -123935304 + L2 LINE L2 3043 3312 -1 218 293 37 0 chrX 38664629 38664711 -123935219 + MIR SINE MIR 178 262 0 1888 139 24 11 chrX 38665161 38665448 -123934482 - AluJo SINE Alu -19 293 3 1603 217 0 3 chrX 38666456 38666751 -123933179 + AluJo SINE Alu 3 296 -16 422 238 13 20 chrX 38666783 38666934 -123932996 - L1ME4a LINE L1 -11 6110 5961 373 315 24 18 chrX 38667040 38667205 -123932725 - L1ME4a LINE L1 -353 5768 5603 1366 159 0 13 chrX 38667205 38667431 -123932499 + AluJo SINE Alu 83 305 -7 1645 147 13 45 chrX 38667589 38667901 -123932029 - AluJo SINE Alu -10 302 1 2258 110 0 16 chrX 38668454 38668762 -123931168 + AluSx SINE Alu 1 303 -9 667 243 52 43 chrX 38668810 38669020 -123930910 - MIR SINE MIR 0 262 51 220 316 29 52 chrX 38669066 38669202 -123930728 - L2 LINE L2 -465 2849 2717 4733 156 58 1 chrX 38670262 38670850 -123929080 + MER6 DNA MER2_type 2 650 -215 2369 92 0 10 chrX 38670850 38671155 -123928775 - AluSq SINE Alu -11 302 1 4733 156 58 1 chrX 38671155 38671382 -123928548 + MER6 DNA MER2_type 650 863 -2 306 0 0 0 chrX 38671680 38671714 -123928216 + (TG)n Simple_repeat Simple_repeat 2 35 0 3450 107 42 29 chrX 38672497 38673094 -123926836 + MER4B LTR ERV1 6 610 0 213 139 56 0 chrX 38673602 38673638 -123926292 - MER91B DNA MER1_type -135 55 18 761 256 47 54 chrX 38674680 38674997 -123924933 + MLT1H LTR MaLR 40 354 -195 1860 175 0 6 chrX 38675521 38675835 -123924095 - AluJb SINE Alu 0 312 1 296 303 119 9 chrX 38676400 38676509 -123923421 - MIR SINE MIR -48 214 94 1066 215 22 18 chrX 38676553 38676776 -123923154 + MIR SINE MIR 38 261 -1 303 93 0 0 chrX 38676904 38676947 -123922983 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 233 385 0 0 chrX 38677225 38677308 -123922622 + L2 LINE L2 3189 3271 -1 21 71 0 0 chrX 38677755 38677797 -123922133 + AT_rich Low_complexity Low_complexity 1 42 0 470 348 36 74 chrX 38678353 38678657 -123921273 + L1MEd LINE L1 495 786 -5586 2422 155 29 7 chrX 38678657 38679070 -123920860 + MSTB LTR MaLR 1 422 -4 470 348 36 74 chrX 38679070 38679101 -123920829 + L1MEd LINE L1 786 817 -5555 2782 210 42 3 chrX 38679179 38679822 -123920108 + L1MC4a LINE L1 7140 7807 -1 625 275 139 69 chrX 38679848 38680382 -123919548 + L1MEd LINE L1 892 1462 -4910 252 282 146 9 chrX 38680394 38680607 -123919323 + L1MEd LINE L1 1418 1659 -4725 357 276 123 34 chrX 38680645 38681116 -123918814 + L1MEd LINE L1 2974 3486 -2896 400 320 78 22 chrX 38681162 38681521 -123918409 + L1MEd LINE L1 3605 3983 -2399 402 234 177 42 chrX 38681524 38681804 -123918126 + L1MEd LINE L1 4240 4587 -1795 1755 110 12 0 chrX 38681804 38682058 -123917872 + AluSg1 SINE Alu 53 309 0 402 234 177 42 chrX 38682058 38682161 -123917769 + L1MEd LINE L1 4587 4675 -1707 1685 203 3 14 chrX 38683212 38683508 -123916422 - AluJo SINE Alu -19 293 1 5499 215 34 26 chrX 38683639 38685874 -123914056 + L1PA16 LINE L1 773 3082 -3121 5465 169 41 19 chrX 38685884 38686848 -123913082 + L1PA16 LINE L1 4103 5045 -1178 2153 130 3 0 chrX 38686848 38687148 -123912782 + AluSx SINE Alu 1 301 -11 5465 169 41 19 chrX 38687148 38687411 -123912519 + L1PA16 LINE L1 5045 5301 -922 234 0 0 0 chrX 38687411 38687437 -123912493 + (CAA)n Simple_repeat Simple_repeat 1 26 0 5465 169 41 19 chrX 38687437 38688260 -123911670 + L1PA16 LINE L1 5301 6203 -20 376 300 90 37 chrX 38688278 38688638 -123911292 + L1MEd LINE L1 4798 5215 -1167 603 0 0 0 chrX 38688638 38688705 -123911225 + (TG)n Simple_repeat Simple_repeat 2 68 0 376 300 90 37 chrX 38688705 38688925 -123911005 + L1MEd LINE L1 5215 5422 -960 * 4228 217 51 16 chrX 38688918 38689268 -123910662 + L1ME1 LINE L1 4115 4451 -1715 3329 115 36 31 chrX 38689268 38689791 -123910139 + MER1A DNA MER1_type 2 527 0 4228 217 51 16 chrX 38689791 38690865 -123909065 + L1ME1 LINE L1 4451 5582 -584 2273 112 3 0 chrX 38690865 38691160 -123908770 + AluSx SINE Alu 1 296 -16 2236 73 16 35 chrX 38691198 38691511 -123908419 + AluY SINE Alu 1 307 -4 2975 144 50 179 chrX 38691511 38691744 -123908186 + L1MCa LINE L1 100 362 -6064 665 189 0 0 chrX 38691744 38691855 -123908075 + FLAM_A SINE Alu 24 134 -8 2975 144 50 179 chrX 38691855 38692319 -123907611 + L1MCa LINE L1 362 728 -5698 2173 118 0 16 chrX 38692319 38692633 -123907297 - AluSx SINE Alu -3 309 1 2975 144 50 179 chrX 38692633 38692929 -123907001 + L1MCa LINE L1 728 1061 -5365 2774 133 37 55 chrX 38692930 38693548 -123906382 - MER4B LTR ERV1 0 779 1 3241 114 85 11 chrX 38693548 38693882 -123906048 + L1MCa LINE L1 1059 1367 -5059 200 57 0 29 chrX 38693882 38693917 -123906013 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3241 114 85 11 chrX 38693917 38694532 -123905398 + L1MCa LINE L1 1367 2183 -4243 1890 157 136 16 chrX 38694532 38694914 -123905016 + MSTA LTR MaLR 1 428 0 3241 114 85 11 chrX 38694914 38694966 -123904964 + L1MCa LINE L1 2183 2230 -4196 417 163 0 12 chrX 38695055 38695135 -123904795 + L1ME1 LINE L1 5578 5656 -510 389 237 64 4 chrX 38695152 38695317 -123904613 + L1ME1 LINE L1 5988 6184 0 1213 232 182 32 chrX 38695759 38696221 -123903709 - MLT1G LTR MaLR 0 590 60 6458 108 35 10 chrX 38696221 38697607 -123902323 + L1MA2 LINE L1 4879 6299 -5 548 242 16 0 chrX 38697627 38697751 -123902179 - MLT1G1 LTR MaLR -469 126 1 612 276 25 5 chrX 38698155 38698354 -123901576 + L1ME2 LINE L1 4945 5147 -999 * 2294 187 31 78 chrX 38698353 38698996 -123900934 + L1ME2 LINE L1 5542 6154 -10 23 54 0 0 chrX 38699626 38699663 -123900267 + AT_rich Low_complexity Low_complexity 1 37 0 792 283 129 27 chrX 38699873 38700244 -123899686 + MLT1I LTR MaLR 1 409 0 541 282 76 54 chrX 38700282 38700759 -123899171 - L1ME LINE L1 -302 5819 5317 238 306 36 22 chrX 38701428 38701650 -123898280 - L1ME LINE L1 -1705 4441 4217 461 286 75 0 chrX 38701877 38702038 -123897892 - Charlie8 DNA MER1_type -2153 264 92 1401 122 50 29 chrX 38702368 38702646 -123897284 - L1MA9 LINE L1 -5 6307 6024 895 269 57 73 chrX 38702657 38703188 -123896742 + LTR67 LTR ERVL 36 557 0 417 311 124 43 chrX 38703901 38704110 -123895820 - MIR SINE MIR -12 250 25 195 331 84 32 chrX 38704290 38704444 -123895486 - L2 LINE L2 -20 3252 3091 216 0 0 0 chrX 38704529 38704553 -123895377 + (CTG)n Simple_repeat Simple_repeat 3 26 0 27 0 0 0 chrX 38704856 38704883 -123895047 + AT_rich Low_complexity Low_complexity 1 27 0 287 220 193 18 chrX 38705321 38705430 -123894500 - MIR3 SINE MIR -19 189 62 262 268 0 0 chrX 38705652 38705708 -123894222 + MIR SINE MIR 201 256 -6 228 356 92 49 chrX 38705779 38706308 -123893622 - L2 LINE L2 -568 2746 2189 1760 69 0 0 chrX 38706308 38706525 -123893405 + L1PA7 LINE L1 5938 6154 0 228 356 92 49 chrX 38706525 38706568 -123893362 - L2 LINE L2 -1125 2189 2149 201 195 0 0 chrX 38706535 38706576 -123893354 + GA-rich Low_complexity Low_complexity 2 42 0 * 492 266 8 0 chrX 38706666 38706790 -123893140 - L2 LINE L2 -7 3306 3182 255 103 0 0 chrX 38706798 38706837 -123893093 + (CA)n Simple_repeat Simple_repeat 2 40 0 614 289 75 82 chrX 38707154 38707766 -123892164 - L2 LINE L2 -18 3295 2686 24 0 0 0 chrX 38710019 38710043 -123889887 + AT_rich Low_complexity Low_complexity 1 24 0 666 289 50 21 chrX 38710424 38710666 -123889264 - MIR SINE MIR -1 261 13 1370 246 7 46 chrX 38710816 38711251 -123888679 + LTR16B LTR ERVL 45 462 -2 754 199 0 0 chrX 38712506 38712637 -123887293 + FLAM_A SINE Alu 1 131 -2 313 329 42 64 chrX 38712833 38713116 -123886814 - L3 LINE CR1 -236 1341 1065 368 245 80 53 chrX 38713220 38713335 -123886595 + MIR SINE MIR 31 155 -71 2002 258 26 2 chrX 38713335 38713788 -123886142 + LTR16B LTR ERVL 1 464 0 368 245 80 53 chrX 38713788 38713830 -123886100 + MIR SINE MIR 155 194 -32 343 305 76 52 chrX 38713854 38714065 -123885865 - L3 LINE CR1 -638 939 720 701 187 116 56 chrX 38714065 38714263 -123885667 - MER63A DNA MER1_type 0 210 1 343 305 76 52 chrX 38714263 38714300 -123885630 - L3 LINE CR1 -857 720 685 465 255 42 62 chrX 38716710 38716902 -123883028 - MER5A DNA MER1_type -1 188 1 4262 242 60 35 chrX 38717153 38718642 -123881288 + L2 LINE L2 1785 3313 0 188 290 47 37 chrX 38719048 38719155 -123880775 - L2 LINE L2 -93 3220 3113 625 236 128 10 chrX 38719160 38719363 -123880567 + MIR SINE MIR 35 261 -1 615 220 0 35 chrX 38720306 38720447 -123879483 - MER5A DNA MER1_type 0 189 54 1893 195 21 0 chrX 38721110 38721443 -123878487 + MER58B DNA MER1_type 1 340 -1 261 0 0 0 chrX 38723118 38723147 -123876783 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 725 256 6 6 chrX 38724375 38724551 -123875379 - MER69A DNA AcHobo -1 176 1 184 325 13 26 chrX 38724600 38724677 -123875253 - MIR3 SINE MIR -8 200 125 212 305 0 0 chrX 38727309 38727368 -123872562 + L2 LINE L2 3236 3294 -19 493 277 153 6 chrX 38727602 38727796 -123872134 + MIR SINE MIR 40 261 -1 27 0 0 0 chrX 38727845 38727872 -123872058 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chrX 38728108 38728165 -123871765 + AT_rich Low_complexity Low_complexity 1 57 0 312 250 155 0 chrX 38728566 38728650 -123871280 + L2 LINE L2 3217 3313 0 491 192 50 0 chrX 38729089 38729188 -123870742 - MIR SINE MIR -120 142 39 234 338 0 0 chrX 38729365 38729436 -123870494 + (TG)n Simple_repeat Simple_repeat 2 72 0 1862 184 0 0 chrX 38730161 38730471 -123869459 + AluJb SINE Alu 1 310 -2 2666 48 0 3 chrX 38730575 38730887 -123869043 + AluY SINE Alu 1 311 0 1932 122 64 10 chrX 38730950 38731283 -123868647 + AluSx SINE Alu 1 349 0 1065 246 0 0 chrX 38731343 38731563 -123868367 + L1ME2 LINE L1 5935 6154 -10 33648 95 12 59 chrX 38732446 38738228 -123861702 + L1PA7 LINE L1 1 5436 -718 1812 114 0 23 chrX 38738228 38738490 -123861440 + AluSg1 SINE Alu 40 295 -14 33648 95 12 59 chrX 38738490 38739171 -123860759 + L1PA7 LINE L1 5436 6147 -7 970 215 14 23 chrX 38739686 38739905 -123860025 + L1ME2 LINE L1 5939 6155 -9 207 0 0 0 chrX 38741373 38741396 -123858534 + (A)n Simple_repeat Simple_repeat 1 23 0 1942 143 0 55 chrX 38741831 38742159 -123857771 + AluJb SINE Alu 1 310 -2 2384 187 15 73 chrX 38742196 38742732 -123857198 - LTR40a LTR ERVL -14 505 1 239 237 34 0 chrX 38742952 38743011 -123856919 - L2 LINE L2 -2 3270 3210 24 32 0 0 chrX 38743113 38743144 -123856786 + AT_rich Low_complexity Low_complexity 1 31 0 473 268 24 39 chrX 38743608 38743789 -123856141 - MIR SINE MIR -49 213 37 1765 151 14 4 chrX 38744880 38745185 -123854745 - AluJo SINE Alu 0 310 3 1030 138 32 37 chrX 38745887 38745959 -123853971 + MER53 DNA DNA 1 72 -117 1896 136 41 10 chrX 38745959 38746253 -123853677 - AluSx SINE Alu -9 303 1 1030 138 32 37 chrX 38746253 38746369 -123853561 + MER53 DNA DNA 72 188 -1 2569 158 22 0 chrX 38749000 38749412 -123850518 + MSTB LTR MaLR 2 422 -4 304 245 96 0 chrX 38749412 38749506 -123850424 + MIR SINE MIR 95 197 -65 225 390 53 11 chrX 38749535 38749725 -123850205 + L2 LINE L2 2472 2669 -645 327 185 65 102 chrX 38749740 38749848 -123850082 + L2 LINE L2 3203 3306 -7 585 262 53 44 chrX 38750826 38751051 -123848879 - L2 LINE L2 -621 2693 2467 580 274 218 24 chrX 38751345 38751757 -123848173 - L3 LINE CR1 -149 1428 937 916 158 0 44 chrX 38754000 38754158 -123845772 + L1MB5 LINE L1 6024 6174 0 290 106 53 75 chrX 38754159 38754237 -123845693 + L1MB7 LINE L1 6098 6174 0 1645 128 0 24 chrX 38754267 38754517 -123845413 + AluJo SINE Alu 44 287 -25 2404 100 0 0 chrX 38755250 38755559 -123844371 + AluSx SINE Alu 1 309 -3 1314 201 45 48 chrX 38755754 38756067 -123843863 + AluJo SINE Alu 1 312 0 526 253 33 22 chrX 38756415 38756597 -123843333 + HsTC2 DNA Tc2 478 661 -1237 2466 63 3 0 chrX 38756597 38756900 -123843030 + AluY SINE Alu 1 304 -7 349 255 90 90 chrX 38757308 38757448 -123842482 + L1ME4a LINE L1 2725 2864 -3282 49 66 0 0 chrX 38757448 38757539 -123842391 + AT_rich Low_complexity Low_complexity 1 91 0 349 255 90 90 chrX 38757539 38757618 -123842312 + L1ME4a LINE L1 2863 3034 -3112 387 296 53 23 chrX 38757649 38757711 -123842219 + MER5B DNA MER1_type 1 60 -118 2051 129 10 7 chrX 38757711 38758014 -123841916 + AluSq SINE Alu 1 304 -9 387 296 53 23 chrX 38758014 38758083 -123841847 + MER5B DNA MER1_type 60 136 -42 289 194 126 29 chrX 38758085 38758188 -123841742 + MER39 LTR ERV1 1 113 -429 1226 191 109 30 chrX 38758223 38758606 -123841324 + MER39 LTR ERV1 92 584 -1 223 250 0 0 chrX 38758607 38758651 -123841279 - MER5B DNA MER1_type -134 44 1 2242 91 7 7 chrX 38758678 38758976 -123840954 + AluSx SINE Alu 1 298 -14 765 98 9 181 chrX 38759525 38759646 -123840284 + MER5B DNA MER1_type 1 71 -107 339 25 0 0 chrX 38759646 38759686 -123840244 + (CA)n Simple_repeat Simple_repeat 1 40 0 765 98 9 181 chrX 38759686 38759779 -123840151 + MER5B DNA MER1_type 71 178 0 350 298 103 62 chrX 38759984 38760226 -123839704 + L1ME4a LINE L1 3972 4223 -1923 2364 82 0 0 chrX 38760547 38760838 -123839092 - AluSx SINE Alu -21 291 1 25 31 0 0 chrX 38761378 38761410 -123838520 + AT_rich Low_complexity Low_complexity 1 32 0 384 287 52 68 chrX 38761570 38761936 -123837994 + L1ME4a LINE L1 5530 5889 -232 2053 92 0 41 chrX 38761940 38762234 -123837696 + AluSx SINE Alu 1 282 -30 264 137 0 0 chrX 38762234 38762285 -123837645 + (G)n Simple_repeat Simple_repeat 1 51 0 194 62 31 0 chrX 38762285 38762317 -123837613 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 0 2412 65 0 0 chrX 38762806 38763100 -123836830 - AluY SINE Alu -17 294 1 180 0 0 0 chrX 38763294 38763314 -123836616 + (T)n Simple_repeat Simple_repeat 1 20 0 183 162 0 0 chrX 38764758 38764795 -123835135 + (CAG)n Simple_repeat Simple_repeat 2 38 0 22 17 0 68 chrX 38766328 38766350 -123833580 + AT_rich Low_complexity Low_complexity 1 23 -32 2079 118 3 40 chrX 38766350 38766673 -123833257 + AluJo SINE Alu 1 311 -1 22 17 0 68 chrX 38766673 38766691 -123833239 + AT_rich Low_complexity Low_complexity 23 38 -17 968 111 0 0 chrX 38766691 38766817 -123833113 + FLAM_C SINE Alu 1 126 -7 22 17 0 68 chrX 38766817 38766834 -123833096 + AT_rich Low_complexity Low_complexity 38 55 0 26 50 0 0 chrX 38766889 38766929 -123833001 + AT_rich Low_complexity Low_complexity 1 40 0 648 285 101 21 chrX 38768854 38769272 -123830658 - HAL1b LINE L1 -646 702 252 2469 77 0 3 chrX 38769288 38769599 -123830331 - AluSg SINE Alu 0 310 1 208 312 16 16 chrX 38771743 38771868 -123828062 + (TA)n Simple_repeat Simple_repeat 2 126 0 2301 96 28 0 chrX 38771868 38772223 -123827707 - Tigger4(Zombi) DNA MER2_type -1 2730 2366 2127 104 124 3 chrX 38772225 38772581 -123827349 + MSTA LTR MaLR 1 399 -29 1323 98 5 16 chrX 38772581 38772765 -123827165 - AluSg/x SINE Alu 0 312 131 1969 101 77 3 chrX 38772766 38773092 -123826838 - Tigger4(Zombi) DNA MER2_type -555 2176 1827 376 77 0 0 chrX 38773093 38773145 -123826785 - MADE1 DNA Mariner -1 79 28 4388 119 39 7 chrX 38773156 38773856 -123826074 - Tigger4(Zombi) DNA MER2_type -1962 769 48 414 0 0 0 chrX 38773868 38773914 -123826016 + (TG)n Simple_repeat Simple_repeat 2 47 0 247 397 84 0 chrX 38774245 38774376 -123825554 - L2 LINE L2 -23 3249 3108 266 324 0 14 chrX 38774463 38774534 -123825396 - L2 LINE L2 -21 3251 3182 * 758 289 59 8 chrX 38774526 38774765 -123825165 - MIR SINE MIR -3 259 9 434 310 189 28 chrX 38774888 38775376 -123824554 - L2 LINE L2 -224 3048 2485 21 0 0 0 chrX 38776291 38776312 -123823618 + AT_rich Low_complexity Low_complexity 1 21 0 662 276 61 0 chrX 38776689 38776885 -123823045 - MIR SINE MIR -48 214 7 2302 102 0 16 chrX 38777062 38777365 -123822565 + AluSg SINE Alu 1 298 -12 186 133 0 0 chrX 38777367 38777397 -123822533 + (ATG)n Simple_repeat Simple_repeat 2 31 0 249 57 0 0 chrX 38777581 38777616 -123822314 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 754 223 49 61 chrX 38777982 38778199 -123821731 + L1ME2 LINE L1 5906 6282 -52 2400 92 0 0 chrX 38778199 38778504 -123821426 + AluSg SINE Alu 1 305 -5 754 223 49 61 chrX 38778504 38778555 -123821375 + L1ME2 LINE L1 6282 6332 -2 362 248 8 33 chrX 38778616 38778737 -123821193 + L1MD2 LINE L1 6067 6184 -175 * 647 131 15 200 chrX 38778711 38778766 -123821164 + L1MD3 LINE L1 7784 7847 -148 4506 78 3 11 chrX 38778766 38779381 -123820549 + MER4B LTR ERV1 1 610 0 647 131 15 200 chrX 38779381 38779585 -123820345 + L1MD3 LINE L1 7847 7995 0 25 31 0 0 chrX 38779694 38779726 -123820204 + AT_rich Low_complexity Low_complexity 1 32 0 1024 127 17 29 chrX 38779941 38780090 -123819840 + MLT1B LTR MaLR 218 366 -24 3759 136 9 79 chrX 38780090 38780449 -123819481 + LTR8 LTR ERV1 1 283 -408 2227 112 0 7 chrX 38780449 38780753 -123819177 + AluSc SINE Alu 3 304 -5 3759 136 9 79 chrX 38780753 38781136 -123818794 + LTR8 LTR ERV1 283 691 0 1024 127 17 29 chrX 38781136 38781159 -123818771 + MLT1B LTR MaLR 366 388 -2 2851 200 61 10 chrX 38781161 38781847 -123818083 - L1ME1 LINE L1 -9 6157 5437 22 56 0 0 chrX 38782516 38782552 -123817378 + AT_rich Low_complexity Low_complexity 1 36 0 2958 164 25 5 chrX 38782690 38783251 -123816679 + MER90 LTR ERV1 1 572 -42 31 0 0 0 chrX 38783289 38783320 -123816610 + AT_rich Low_complexity Low_complexity 1 31 0 647 254 38 22 chrX 38783894 38784079 -123815851 - MIR3 SINE MIR -6 202 15 432 102 45 57 chrX 38784194 38784282 -123815648 - MER90 LTR ERV1 -361 253 167 2459 87 0 0 chrX 38784598 38784907 -123815023 + AluSx SINE Alu 1 309 -3 1233 123 21 141 chrX 38784907 38785241 -123814689 + MER96B DNA MER1_type? 124 417 0 230 207 17 17 chrX 38785241 38785299 -123814631 - MER20B DNA MER1_type -695 88 31 259 248 129 0 chrX 38785329 38785430 -123814500 - MLT1L LTR MaLR -80 535 422 2590 147 27 7 chrX 38785465 38785946 -123813984 + LTR45B LTR ERV1 2 525 0 261 272 65 30 chrX 38786063 38786232 -123813698 - MLT1J LTR MaLR -336 175 1 1450 204 32 60 chrX 38786369 38786839 -123813091 - LTR16A1 LTR ERVL 0 457 1 2213 107 0 0 chrX 38787286 38787567 -123812363 + AluSx SINE Alu 17 297 -15 183 80 0 0 chrX 38788033 38788058 -123811872 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chrX 38791276 38791303 -123808627 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 1475 118 57 0 chrX 38791739 38792001 -123807929 + L1MA8 LINE L1 6013 6289 -2 240 111 0 0 chrX 38792714 38792750 -123807180 + (A)n Simple_repeat Simple_repeat 1 36 0 365 289 100 30 chrX 38792942 38793289 -123806641 + L1ME2 LINE L1 5477 5858 -306 2409 89 0 3 chrX 38793290 38793594 -123806336 + AluSq SINE Alu 1 303 -10 192 40 0 0 chrX 38794213 38794238 -123805692 + (TC)n Simple_repeat Simple_repeat 1 25 0 207 171 0 0 chrX 38794238 38794273 -123805657 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 358 41 32 chrX 38794423 38794546 -123805384 - L2 LINE L2 -11 3302 3179 2767 139 12 7 chrX 38794563 38794987 -123804943 + MSTB LTR MaLR 1 426 0 586 290 52 23 chrX 38795007 38795232 -123804698 - MIR SINE MIR -4 258 30 200 298 64 32 chrX 38795571 38795665 -123804265 - L2 LINE L2 -16 3256 3160 228 320 62 10 chrX 38795930 38796027 -123803903 - L2 LINE L2 -2 3270 3169 829 192 68 57 chrX 38796030 38796193 -123803737 + L1MB5 LINE L1 5050 5219 -927 620 202 8 23 chrX 38796193 38796322 -123803608 + FLAM_C SINE Alu 5 131 -2 829 192 68 57 chrX 38796322 38796439 -123803491 + L1MB5 LINE L1 5219 5333 -813 583 90 0 0 chrX 38796439 38796517 -123803413 - LTR3b LTR ERVK 0 500 423 279 56 0 0 chrX 38796518 38796554 -123803376 - LTR3b LTR ERVK -42 458 423 3458 83 11 0 chrX 38796560 38797029 -123802901 - LTR3b LTR ERVK -10 490 17 4174 150 19 49 chrX 38797029 38797122 -123802808 + L1MB5 LINE L1 5348 5442 -732 1802 159 14 27 chrX 38797122 38797417 -123802513 + AluJb SINE Alu 1 291 -21 4174 150 19 49 chrX 38797417 38798176 -123801754 + L1MB5 LINE L1 5442 6174 0 2189 127 3 0 chrX 38798621 38798920 -123801010 - AluSq SINE Alu -12 301 2 878 214 122 13 chrX 38799136 38799440 -123800490 - MER113 DNA MER1_type? -132 389 53 21 0 0 0 chrX 38799528 38799549 -123800381 + AT_rich Low_complexity Low_complexity 1 21 0 2365 115 0 0 chrX 38799549 38799861 -123800069 - AluSx SINE Alu 0 312 1 2843 246 37 39 chrX 38800640 38801420 -123798510 - L2 LINE L2 -687 2627 1849 266 224 0 0 chrX 38801938 38801987 -123797943 + L2 LINE L2 3261 3309 -4 364 348 60 5 chrX 38802127 38802311 -123797619 + MIR SINE MIR 10 203 -59 1798 82 0 0 chrX 38802421 38802640 -123797290 + AluSg/x SINE Alu 73 291 -21 3285 170 36 40 chrX 38803434 38804128 -123795802 + LTR8 LTR ERV1 1 691 0 201 174 0 43 chrX 38805483 38805515 -123794415 - MIR SINE MIR -40 222 191 2234 121 0 3 chrX 38805515 38805812 -123794118 - AluJb SINE Alu -16 296 1 201 174 0 43 chrX 38805812 38805825 -123794105 - MIR SINE MIR -71 191 179 1582 137 42 0 chrX 38805839 38806124 -123793806 + L1MA5 LINE L1 5977 6273 -27 333 242 8 23 chrX 38806125 38806257 -123793673 + L1MC4a LINE L1 5295 5424 -2384 447 204 20 120 chrX 38806259 38806336 -123793594 - MIR SINE MIR -66 196 144 2442 97 3 0 chrX 38806336 38806646 -123793284 - AluJb SINE Alu -1 311 1 447 204 20 120 chrX 38806646 38806746 -123793184 - MIR SINE MIR -118 144 36 21 36 0 0 chrX 38807193 38807221 -123792709 + AT_rich Low_complexity Low_complexity 1 28 0 4193 87 25 40 chrX 38808051 38808695 -123791235 + MER51A LTR ERV1 1 634 0 243 276 19 19 chrX 38808695 38808800 -123791130 + MLT1L LTR MaLR 511 615 0 1985 223 12 45 chrX 38808903 38809226 -123790704 + L1MD2 LINE L1 4682 5014 -1132 1659 175 7 17 chrX 38809226 38809523 -123790407 - AluJo SINE Alu -17 295 2 1985 223 12 45 chrX 38809523 38809585 -123790345 + L1MD2 LINE L1 5014 5076 -1070 1745 168 3 27 chrX 38809585 38809882 -123790048 + AluJb SINE Alu 1 290 -22 1985 223 12 45 chrX 38809882 38810137 -123789793 + L1MD2 LINE L1 5076 5302 -844 1011 158 0 0 chrX 38810142 38810309 -123789621 + AluSg/x SINE Alu 137 303 0 4881 167 29 24 chrX 38810315 38811253 -123788677 + L1MD2 LINE L1 5301 6246 -113 1882 171 0 22 chrX 38811253 38811569 -123788361 + AluJo SINE Alu 1 309 -3 4881 167 29 24 chrX 38811569 38811684 -123788246 + L1MD2 LINE L1 6246 6359 0 982 280 65 21 chrX 38813349 38813769 -123786161 + MLT1L LTR MaLR 70 613 -2 2333 95 7 0 chrX 38814086 38814391 -123785539 - AluSp SINE Alu -6 307 1 645 182 7 7 chrX 38814391 38814534 -123785396 - L1M4 LINE L1 -838 5308 5166 957 214 13 5 chrX 38814537 38814761 -123785169 + L1MC4a LINE L1 5691 5916 -1892 21 0 0 0 chrX 38814809 38814830 -123785100 + AT_rich Low_complexity Low_complexity 1 21 0 370 328 176 50 chrX 38814898 38815422 -123784508 + L1MC4a LINE L1 6041 6630 -1178 1296 152 62 79 chrX 38815424 38815722 -123784208 + L1MB5 LINE L1 5186 5460 -903 2308 88 10 3 chrX 38815722 38816029 -123783901 + AluSx SINE Alu 1 309 -3 1296 152 62 79 chrX 38816029 38816188 -123783742 + L1MB5 LINE L1 5460 5620 -743 3381 187 74 45 chrX 38816191 38817235 -123782695 + Charlie6 DNA MER1_type 2309 3382 -118 363 191 0 0 chrX 38817233 38817296 -123782634 + Charlie6 DNA MER1_type 2443 2505 -995 * 914 182 145 0 chrX 38817338 38817552 -123782378 - L1MC/D LINE L1 -2422 5620 5376 601 195 25 0 chrX 38817553 38817671 -123782259 + Charlie6 DNA MER1_type 3373 3493 -7 724 113 0 93 chrX 38817671 38817821 -123782109 + L1MB5 LINE L1 6038 6173 -1 1081 179 0 67 chrX 38817916 38818140 -123781790 + AluJb SINE Alu 85 293 -19 224 320 32 80 chrX 38818511 38818526 -123781404 + L3 LINE CR1 1402 1416 -161 2351 85 0 0 chrX 38818526 38818820 -123781110 + AluSx SINE Alu 1 294 -18 224 320 32 80 chrX 38818820 38818929 -123781001 + L3 LINE CR1 1416 1520 -57 183 156 0 0 chrX 38819633 38819665 -123780265 + (CA)n Simple_repeat Simple_repeat 2 33 0 260 223 64 53 chrX 38819712 38819806 -123780124 + L1ME3A LINE L1 4818 4912 -1234 2344 70 0 24 chrX 38819987 38820285 -123779645 + AluSx SINE Alu 1 291 -21 1004 233 51 19 chrX 38820305 38820895 -123779035 + L1ME3A LINE L1 5362 6011 -159 377 169 65 5 chrX 38820905 38821028 -123778902 - MER53 DNA DNA 0 189 1 2206 125 0 3 chrX 38821063 38821367 -123778563 - AluJb SINE Alu -9 303 1 2438 57 7 0 chrX 38822213 38822510 -123777420 + AluSx SINE Alu 1 299 -13 457 273 168 23 chrX 38822700 38822920 -123777010 + MIR SINE MIR 11 262 0 914 104 15 22 chrX 38823817 38823830 -123776100 - AluJo SINE Alu -178 134 122 189 0 0 0 chrX 38823830 38823851 -123776079 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 914 104 15 22 chrX 38823851 38823972 -123775958 - AluJo SINE Alu -190 122 1 251 304 50 39 chrX 38824406 38824587 -123775343 + L2 LINE L2 2833 3015 -257 1822 109 87 0 chrX 38824882 38825157 -123774773 + AluSg SINE Alu 1 299 -11 368 269 117 43 chrX 38825160 38825686 -123774244 - L1ME1 LINE L1 -303 5863 5286 312 268 105 57 chrX 38825704 38825846 -123774084 - L1ME1 LINE L1 -877 5269 5110 2285 128 0 0 chrX 38825846 38826158 -123773772 - AluSx SINE Alu 0 312 1 312 268 105 57 chrX 38826158 38826243 -123773687 - L1ME1 LINE L1 -1036 5110 5031 2551 182 25 88 chrX 38826259 38826539 -123773391 - L1MC4 LINE L1 0 8042 7746 1527 153 12 24 chrX 38826539 38826794 -123773136 - AluJo SINE Alu -17 295 44 2551 182 25 88 chrX 38826794 38826856 -123773074 - L1MC4 LINE L1 -296 7746 7682 1767 149 52 7 chrX 38826856 38827144 -123772786 - AluJb SINE Alu -11 301 1 2551 182 25 88 chrX 38827144 38827333 -123772597 - L1MC4 LINE L1 -360 7682 7568 2370 100 3 0 chrX 38827333 38827644 -123772286 + AluSx SINE Alu 1 312 0 2551 182 25 88 chrX 38827644 38827863 -123772067 - L1MC4 LINE L1 -474 7568 7337 462 271 14 0 chrX 38827907 38828047 -123771883 - L1MC4 LINE L1 -1423 6619 6478 389 153 0 0 chrX 38828047 38828106 -123771824 + Tigger2 DNA MER2_type 2 60 -2658 325 122 0 0 chrX 38828121 38828170 -123771760 + MER83B LTR ERV1 226 274 -104 872 201 6 0 chrX 38828175 38828334 -123771596 - MER8 DNA MER2_type -79 160 1 747 242 47 23 chrX 38828334 38828590 -123771340 - L1MC4a LINE L1 -1345 6463 6202 2407 84 0 0 chrX 38828599 38828897 -123771033 - AluSc SINE Alu -11 298 1 510 297 62 58 chrX 38828946 38829139 -123770791 - L1MEd LINE L1 -2892 3237 3046 2837 122 15 34 chrX 38829139 38829588 -123770342 + LTR24 LTR ERV1 1 457 -10 186 43 0 0 chrX 38829588 38829611 -123770319 + (TC)n Simple_repeat Simple_repeat 2 24 0 2419 106 0 0 chrX 38829611 38829922 -123770008 - AluSx SINE Alu -1 311 1 2837 122 15 34 chrX 38829922 38829947 -123769983 + LTR24 LTR ERV1 455 467 0 510 297 62 58 chrX 38829947 38830261 -123769669 - L1MEd LINE L1 -3083 3046 2735 2335 105 0 9 chrX 38830261 38830576 -123769354 - AluSx SINE Alu 0 312 1 510 297 62 58 chrX 38830576 38831170 -123768760 - L1MEd LINE L1 -3394 2735 2131 22 56 0 0 chrX 38831443 38831479 -123768451 + AT_rich Low_complexity Low_complexity 1 36 0 345 243 36 21 chrX 38831562 38831702 -123768228 - L1MEd LINE L1 -5269 850 709 340 235 12 35 chrX 38832138 38832223 -123767707 - L2 LINE L2 -6 3307 3225 4389 189 23 34 chrX 38832881 38833861 -123766069 + L1MB7 LINE L1 3560 4528 -1618 1987 140 0 3 chrX 38833861 38834147 -123765783 - AluSx SINE Alu -27 285 1 4389 189 23 34 chrX 38834147 38834282 -123765648 + L1MB7 LINE L1 4528 4663 -1483 723 193 129 0 chrX 38834314 38834485 -123765445 + AluSp SINE Alu 117 309 -4 4147 169 31 48 chrX 38834485 38835345 -123764585 + L1MB7 LINE L1 4678 5512 -672 2028 107 7 4 chrX 38835345 38835651 -123764279 + AluSx SINE Alu 11 312 0 4147 169 31 48 chrX 38835651 38836303 -123763627 + L1MB7 LINE L1 5512 6173 -11 2248 85 0 0 chrX 38836321 38836628 -123763302 - AluSc SINE Alu 0 307 1 722 215 6 19 chrX 38836639 38836797 -123763133 - MER3 DNA MER1_type -53 156 1 722 194 44 103 chrX 38836821 38837051 -123762879 + L1MC5 LINE L1 7510 7717 -244 2306 105 0 0 chrX 38837051 38837369 -123762561 + AluSx SINE Alu 1 318 0 722 194 44 103 chrX 38837369 38837477 -123762453 + L1MC5 LINE L1 7717 7830 -131 5569 125 27 49 chrX 38837479 38837915 -123762015 + L1MA8 LINE L1 5163 5607 -684 2252 91 0 0 chrX 38837915 38838227 -123761703 + AluSq SINE Alu 1 312 0 5569 125 27 49 chrX 38838227 38838394 -123761536 + L1MA8 LINE L1 5607 5776 -515 195 42 0 0 chrX 38838394 38838418 -123761512 + (TA)n Simple_repeat Simple_repeat 1 24 0 5569 125 27 49 chrX 38838418 38838963 -123760967 + L1MA8 LINE L1 5776 6291 0 1760 178 7 13 chrX 38838982 38839286 -123760644 + AluJo SINE Alu 1 302 -10 262 280 0 21 chrX 38839287 38839380 -123760550 + L1MC5 LINE L1 7822 7912 -49 447 19 0 0 chrX 38839388 38839440 -123760490 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 21 0 0 0 chrX 38839741 38839762 -123760168 + AT_rich Low_complexity Low_complexity 1 21 0 541 265 41 8 chrX 38840075 38840320 -123759610 + L1ME3A LINE L1 4316 4568 -1578 309 221 10 39 chrX 38840346 38840450 -123759480 + L1ME3A LINE L1 5862 5962 -208 2205 104 27 0 chrX 38840681 38840980 -123758950 - AluSx SINE Alu -5 307 1 601 71 0 0 chrX 38840992 38841077 -123758853 - L1PA6 LINE L1 -1 6153 6069 371 343 36 7 chrX 38841792 38841929 -123758001 - MIR SINE MIR -113 149 9 193 156 0 143 chrX 38841982 38842059 -123757871 - L2 LINE L2 -1039 2275 2210 1674 205 40 30 chrX 38842140 38842545 -123757385 + LTR2 LTR ERV1 41 449 0 275 114 0 0 chrX 38842560 38842593 -123757337 - L1PA5 LINE L1 -278 5876 5841 2381 35 3 0 chrX 38842593 38842881 -123757049 + L1PA5 LINE L1 5864 6152 -2 658 246 161 5 chrX 38843004 38843203 -123756727 + MIR SINE MIR 20 249 -13 350 141 141 0 chrX 38843606 38843677 -123756253 - L1PB4 LINE L1 -11 6145 6065 600 281 50 63 chrX 38843774 38844250 -123755680 + L1MEd LINE L1 788 1257 -4862 2266 229 19 28 chrX 38844374 38845007 -123754923 + L1ME1 LINE L1 5516 6142 -24 323 72 0 175 chrX 38845011 38845066 -123754864 - L1MB8 LINE L1 -1 6177 6145 2129 75 0 4 chrX 38845066 38845331 -123754599 - AluSq SINE Alu -20 293 30 323 72 0 175 chrX 38845331 38845372 -123754558 - L1MB8 LINE L1 -33 6145 6098 1683 91 40 33 chrX 38845373 38845649 -123754281 - L1MA8 LINE L1 0 6291 6014 236 250 13 0 chrX 38845957 38846033 -123753897 + L1 LINE L1 3686 3762 -2384 2188 128 0 0 chrX 38846035 38846332 -123753598 + AluSx SINE Alu 1 297 -15 519 308 50 33 chrX 38846543 38846842 -123753088 + L1MEd LINE L1 5 308 -5811 4511 92 18 191 chrX 38846911 38847646 -123752284 + Tigger3b DNA MER2_type 1 861 -2168 2337 104 3 0 chrX 38847646 38847953 -123751977 + AluSq SINE Alu 1 308 -5 4511 92 18 191 chrX 38847953 38848055 -123751875 + Tigger3b DNA MER2_type 861 979 -2050 1188 150 62 5 chrX 38848055 38848248 -123751682 - AluJb SINE Alu -108 204 1 4511 92 18 191 chrX 38848248 38848698 -123751232 + Tigger3b DNA MER2_type 979 1232 0 270 328 133 52 chrX 38848801 38848875 -123751055 + L2 LINE L2 1866 1933 -1381 2126 127 0 0 chrX 38848875 38849167 -123750763 - AluSx SINE Alu -20 292 1 270 328 133 52 chrX 38849167 38849476 -123750454 + L2 LINE L2 1933 2280 -1034 1540 246 91 26 chrX 38849480 38849984 -123749946 + MER34 LTR ERV1 6 542 0 505 349 105 31 chrX 38849993 38850534 -123749396 + L2 LINE L2 2285 2865 -449 230 160 85 5 chrX 38850556 38850661 -123749269 + AluJo SINE Alu 115 287 -15 334 333 212 19 chrX 38850691 38851012 -123748918 + L2 LINE L2 2890 3272 0 375 228 19 25 chrX 38851212 38851370 -123748560 - HAL1b LINE L1 -194 1154 998 254 303 115 66 chrX 38852011 38852255 -123747675 + L2 LINE L2 3016 3271 -1 279 157 0 0 chrX 38852259 38852310 -123747620 + GA-rich Low_complexity Low_complexity 2 52 0 187 338 23 45 chrX 38852311 38852327 -123747603 - L2 LINE L2 -214 3058 3043 198 103 0 0 chrX 38852327 38852356 -123747574 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 187 338 23 45 chrX 38852356 38852472 -123747458 - L2 LINE L2 -229 3043 2929 1756 102 0 147 chrX 38852496 38852850 -123747080 + AluSx SINE Alu 1 302 0 740 232 79 6 chrX 38853493 38853670 -123746260 + MIR SINE MIR 13 202 -60 311 285 126 29 chrX 38853697 38853974 -123745956 - L2 LINE L2 -1132 2182 1879 421 229 0 10 chrX 38854395 38854491 -123745439 + MER34 LTR ERV1 1 95 -447 734 217 29 6 chrX 38854494 38854669 -123745261 + MER34 LTR ERV1 362 540 -2 216 0 0 0 chrX 38854770 38854794 -123745136 + (GA)n Simple_repeat Simple_repeat 1 24 0 3812 183 6 25 chrX 38854907 38855118 -123744812 - L1P LINE L1 -910 5236 5023 2112 137 16 0 chrX 38855118 38855424 -123744506 - AluJb SINE Alu -1 311 1 3812 183 6 25 chrX 38855424 38856064 -123743866 - L1P LINE L1 -1123 5023 4401 * 5651 108 17 7 chrX 38856062 38856950 -123742980 + L1PA16 LINE L1 5260 6156 -10 2604 139 29 5 chrX 38857010 38857426 -123742504 + MSTB LTR MaLR 1 426 0 3004 165 37 15 chrX 38857829 38858375 -123741555 - MER68 LTR ERV1 -3 559 2 225 0 0 0 chrX 38858504 38858529 -123741401 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 267 31 0 0 chrX 38858528 38858560 -123741370 + (GA)n Simple_repeat Simple_repeat 1 32 0 2080 105 0 21 chrX 38858574 38858860 -123741070 + AluSx SINE Alu 24 303 -9 311 304 101 13 chrX 38859552 38859688 -123740242 - L2 LINE L2 0 3313 3160 2250 108 0 6 chrX 38859688 38860002 -123739928 + AluSx SINE Alu 1 312 0 311 304 101 13 chrX 38860002 38860023 -123739907 - L2 LINE L2 -153 3160 3142 327 399 91 10 chrX 38860200 38860508 -123739422 - L2 LINE L2 -400 2914 2582 1662 192 11 21 chrX 38860574 38860861 -123739069 + AluJb SINE Alu 1 284 -28 1994 156 10 0 chrX 38861046 38861353 -123738577 - AluJo SINE Alu -2 310 1 343 283 9 0 chrX 38861567 38861673 -123738257 - L1MC4a LINE L1 -1874 5934 5828 312 91 0 0 chrX 38861680 38861724 -123738206 + U6 snRNA snRNA 2 45 -62 2361 106 0 3 chrX 38861740 38862051 -123737879 - AluSx SINE Alu -2 310 1 237 271 35 0 chrX 38862053 38862138 -123737792 - L1MC4a LINE L1 -1983 5825 5738 195 100 0 0 chrX 38862138 38862168 -123737762 + (TTA)n Simple_repeat Simple_repeat 1 30 0 237 337 53 98 chrX 38863096 38863381 -123736549 + L3b LINE CR1 1172 1443 -140 441 0 0 0 chrX 38863919 38863968 -123735962 + (TG)n Simple_repeat Simple_repeat 1 49 0 2216 86 4 0 chrX 38863968 38864247 -123735683 - AluSp SINE Alu -33 280 1 231 333 69 13 chrX 38864525 38864684 -123735246 - L3 LINE CR1 -565 1012 845 2997 129 29 76 chrX 38864758 38865213 -123734717 + MER41A LTR ERV1 1 425 -129 2260 113 0 0 chrX 38865213 38865523 -123734407 - AluY SINE Alu -1 310 1 2997 129 29 76 chrX 38865523 38865647 -123734283 + MER41A LTR ERV1 425 553 -1 2384 104 0 0 chrX 38865834 38866133 -123733797 + AluSg SINE Alu 1 299 -11 611 147 0 0 chrX 38866184 38866286 -123733644 - MER2 DNA MER2_type -135 210 109 277 252 93 22 chrX 38866292 38866431 -123733499 - MLT1L LTR MaLR -1 614 466 745 219 39 11 chrX 38866696 38866874 -123733056 + MIR SINE MIR 69 251 -11 318 268 97 8 chrX 38866877 38867082 -123732848 + L1MC4 LINE L1 5707 5816 -305 2529 149 14 65 chrX 38868289 38868668 -123731262 + L1MA9 LINE L1 5230 5627 -685 2460 62 0 3 chrX 38868668 38868972 -123730958 + AluY SINE Alu 1 303 -8 2324 97 0 3 chrX 38868982 38869293 -123730637 + AluSp SINE Alu 2 311 -2 2529 149 14 65 chrX 38869293 38869485 -123730445 + L1MA9 LINE L1 5636 5782 -530 336 238 71 0 chrX 38869495 38869579 -123730351 + L1MC4 LINE L1 6614 6703 -1339 * 340 296 0 0 chrX 38869504 38869592 -123730338 - L1MC4 LINE L1 -1340 6702 6615 213 94 0 0 chrX 38869592 38869624 -123730306 + (CA)n Simple_repeat Simple_repeat 1 32 0 1436 130 16 49 chrX 38869650 38869897 -123730033 + AluJb SINE Alu 55 293 -19 1104 187 32 166 chrX 38869897 38870433 -123729497 + L1MA9 LINE L1 5824 6287 -25 1479 170 87 8 chrX 38870433 38870698 -123729232 - AluJb SINE Alu -26 286 1 22 35 0 0 chrX 38870698 38870727 -123729203 + AT_rich Low_complexity Low_complexity 1 29 0 551 284 83 27 chrX 38870803 38871013 -123728917 + MIR SINE MIR 1 218 -44 1549 123 0 5 chrX 38871125 38871337 -123728593 + AluSg/x SINE Alu 85 295 -17 288 0 0 0 chrX 38872534 38872566 -123727364 + (CA)n Simple_repeat Simple_repeat 1 32 0 180 77 0 0 chrX 38873007 38873033 -123726897 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 209 56 13 chrX 38873254 38873704 -123726226 + L1ME2 LINE L1 5694 6162 -2 1931 150 0 0 chrX 38873725 38874012 -123725918 + AluJo SINE Alu 1 287 -25 2279 103 3 0 chrX 38874260 38874586 -123725344 - AluSx SINE Alu 0 312 1 2290 119 0 0 chrX 38875394 38875706 -123724224 - AluSx SINE Alu 0 312 1 15820 106 15 35 chrX 38875849 38878313 -123721617 + Tigger1 DNA MER2_type 4 2418 0 1680 143 115 3 chrX 38878427 38878749 -123721181 - MER46B DNA MER2_type 0 236 4 266 235 0 0 chrX 38879048 38879099 -123720831 - L2 LINE L2 0 3313 3263 22 0 0 0 chrX 38880543 38880565 -123719365 + AT_rich Low_complexity Low_complexity 1 22 0 1913 218 59 50 chrX 38880619 38880775 -123719155 - MER97a DNA MER1_type? 0 894 741 2211 162 6 3 chrX 38880775 38881139 -123718791 + MLT1A1 LTR MaLR 1 365 0 1913 218 59 50 chrX 38881139 38881219 -123718711 - MER97a DNA MER1_type? -153 741 663 726 91 0 0 chrX 38881219 38881318 -123718612 + HY3 scRNA scRNA 1 99 -2 1913 218 59 50 chrX 38881318 38881772 -123718158 - MER97a DNA MER1_type? -231 663 197 1292 177 41 4 chrX 38881772 38882038 -123717892 + MER33 DNA MER1_type 1 276 -48 15034 167 14 45 chrX 38882051 38882531 -123717399 - L1MA4 LINE L1 -5 7714 7221 1860 161 7 0 chrX 38882531 38882829 -123717101 + AluJb SINE Alu 1 300 -12 15034 167 14 45 chrX 38882829 38883062 -123716868 - L1MA4 LINE L1 -498 7221 6982 2135 129 3 0 chrX 38883062 38883372 -123716558 - AluSx SINE Alu -1 311 1 15034 167 14 45 chrX 38883372 38884388 -123715542 - L1MA4 LINE L1 -737 6982 5937 2197 89 11 0 chrX 38884388 38884697 -123715233 + AluSx SINE Alu 1 312 0 15034 167 14 45 chrX 38884697 38887367 -123712563 - L1MA4 LINE L1 -1782 5937 3187 2227 129 3 0 chrX 38887367 38887676 -123712254 - AluSg SINE Alu 0 310 1 15034 167 14 45 chrX 38887676 38887832 -123712098 - L1MA4 LINE L1 -4532 3187 3283 1730 152 3 33 chrX 38887832 38888135 -123711795 + AluJo SINE Alu 14 307 -5 15034 167 14 45 chrX 38888135 38888226 -123711704 - L1MA4 LINE L1 -4435 3284 3192 326 123 35 0 chrX 38888226 38888283 -123711647 + MER33 DNA MER1_type 266 324 0 970 173 52 5 chrX 38888286 38888477 -123711453 - MER97b DNA MER1_type? -852 201 2 198 0 0 0 chrX 38888980 38889002 -123710928 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 444 291 48 15 chrX 38889021 38889227 -123710703 - MLT1J LTR MaLR -8 503 291 1760 195 20 0 chrX 38889234 38889639 -123710291 + L1M4 LINE L1 4387 4799 -1347 2570 196 38 9 chrX 38889647 38890280 -123709650 + L1MDa LINE L1 1747 2397 -4143 741 125 100 0 chrX 38890297 38890417 -123709513 + MER20 DNA MER1_type 88 219 0 882 155 14 20 chrX 38890649 38890797 -123709133 + AluJo SINE Alu 4 150 -162 20440 162 50 16 chrX 38890797 38892083 -123707847 - L1 LINE L1 -1193 6372 5131 1941 140 49 7 chrX 38892083 38892369 -123707561 - AluJb SINE Alu -14 298 1 20440 162 50 16 chrX 38892369 38894314 -123705616 - L1 LINE L1 -2434 5131 3253 2196 131 0 3 chrX 38894314 38894627 -123705303 - AluSq SINE Alu -1 312 1 20440 162 50 16 chrX 38894627 38897378 -123702552 - L1 LINE L1 -4312 3253 32 822 167 35 14 chrX 38897385 38897529 -123702401 - AluJo SINE Alu -165 147 1 1310 235 45 3 chrX 38897610 38897989 -123701941 + L1M4 LINE L1 3548 3942 -2204 1125 213 37 4 chrX 38898000 38898244 -123701686 + L1M4 LINE L1 5 256 -6286 2570 144 16 94 chrX 38898366 38898975 -123700955 + L1MB5 LINE L1 5577 6138 -36 1085 249 32 41 chrX 38899026 38899065 -123700865 + L1M4 LINE L1 4428 4466 -2178 2208 99 3 0 chrX 38899065 38899378 -123700552 + AluSx SINE Alu 1 314 0 1085 249 32 41 chrX 38899378 38899679 -123700251 + L1M4 LINE L1 4466 4766 -1878 1975 187 30 9 chrX 38899699 38900269 -123699661 + L1MD2 LINE L1 5716 6346 -13 790 307 88 22 chrX 38900294 38900395 -123699535 + L1M4 LINE L1 3047 3140 -3006 1634 195 34 3 chrX 38900395 38900692 -123699238 + AluJo SINE Alu 1 306 -6 790 307 88 22 chrX 38900692 38901522 -123698408 + L1M4 LINE L1 3140 4167 -1979 1978 266 51 10 chrX 38901539 38902239 -123697691 + HAL1 LINE L1 1154 1882 -625 1435 227 113 13 chrX 38902702 38903161 -123696769 - MLT1D LTR MaLR 0 505 1 333 291 79 5 chrX 38903274 38903463 -123696467 + L1M4 LINE L1 4613 4815 -1331 11519 51 3 0 chrX 38903645 38905190 -123694740 - L1P LINE L1 -2693 3453 1904 1289 122 0 0 chrX 38905279 38905476 -123694454 + L1 LINE L1 4056 4252 -1894 468 240 33 0 chrX 38905476 38905597 -123694333 + LTR16A LTR ERVL 69 193 -257 826 284 88 18 chrX 38905644 38906138 -123693792 - MLT1H1 LTR MaLR -63 492 1 470 252 36 0 chrX 38906143 38906254 -123693676 - MER91C DNA MER1_type -10 130 16 578 219 0 16 chrX 38906833 38906956 -123692974 - L2 LINE L2 0 3313 3193 628 265 30 6 chrX 38906993 38907159 -123692771 + MER97c DNA MER1_type? 10 179 -911 2191 96 3 0 chrX 38907261 38907553 -123692377 + AluSp SINE Alu 15 307 -6 1430 255 67 40 chrX 38908949 38909479 -123690451 + L2 LINE L2 2568 3112 -201 2234 124 0 6 chrX 38909479 38909793 -123690137 - AluJb SINE Alu 0 312 1 1430 255 67 40 chrX 38909793 38909997 -123689933 + L2 LINE L2 3112 3309 -4 335 252 0 63 chrX 38910145 38910256 -123689674 + MLT1K LTR MaLR 470 573 -15 282 369 35 28 chrX 38910976 38911279 -123688651 - L2 LINE L2 -2 3311 2924 2220 120 0 0 chrX 38911319 38911618 -123688312 + AluSx SINE Alu 1 299 -13 2553 70 3 0 chrX 38911618 38911920 -123688010 + AluSp SINE Alu 1 303 -10 220 267 17 0 chrX 38911920 38911980 -123687950 + GA-rich Low_complexity Low_complexity 3 63 0 1519 290 44 0 chrX 38911991 38912422 -123687508 + LTR16A LTR ERVL 1 450 0 843 165 0 0 chrX 38912453 38912580 -123687350 + FLAM_C SINE Alu 1 127 -16 29 0 0 0 chrX 38912581 38912610 -123687320 + AT_rich Low_complexity Low_complexity 1 29 0 2396 98 0 6 chrX 38912961 38913276 -123686654 - AluSq SINE Alu 0 313 1 1237 117 8 76 chrX 38913680 38913844 -123686086 - L1MA5 LINE L1 -5 6295 6152 2109 128 0 22 chrX 38913844 38914157 -123685773 + AluSx SINE Alu 1 306 -6 1237 117 8 76 chrX 38914157 38914241 -123685689 - L1MA5 LINE L1 -148 6152 6064 6053 112 17 2 chrX 38914300 38915561 -123684369 + L1PA13 LINE L1 4865 6152 -11 395 242 242 6 chrX 38915702 38915884 -123684046 - MIR SINE MIR -18 244 20 2412 101 7 0 chrX 38915944 38916252 -123683678 + AluSg SINE Alu 1 310 0 2218 108 3 3 chrX 38916263 38916559 -123683371 + AluSp SINE Alu 1 296 -17 768 284 136 30 chrX 38916674 38917012 -123682918 - LTR16A LTR ERVL -61 389 16 368 60 40 0 chrX 38917475 38917525 -123682405 + MSTB LTR MaLR 1 52 -374 2005 119 4 4 chrX 38917526 38917804 -123682126 + AluJb SINE Alu 2 279 -33 2338 119 19 28 chrX 38917804 38918164 -123681766 + THE1B LTR MaLR 8 364 0 2483 129 26 11 chrX 38918195 38918574 -123681356 + MSTB LTR MaLR 42 426 0 289 260 195 0 chrX 38918575 38918652 -123681278 + L2 LINE L2 3195 3286 -27 257 223 22 54 chrX 38918679 38918810 -123681120 - MLT1H LTR MaLR -16 533 416 424 263 39 36 chrX 38918870 38919065 -123680865 - MLT1H LTR MaLR -241 168 20 198 69 0 0 chrX 38919084 38919113 -123680817 + L2 LINE L2 3282 3310 -3 389 250 44 0 chrX 38919114 38919228 -123680702 + L1MC4a LINE L1 5820 5940 -181 407 104 0 15 chrX 38919443 38919510 -123680420 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 270 116 0 0 chrX 38919504 38919547 -123680383 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 * 898 101 13 13 chrX 38919547 38919696 -123680234 + (GAAA)n Simple_repeat Simple_repeat 1 149 0 2426 93 0 6 chrX 38920464 38920777 -123679153 + AluSx SINE Alu 1 311 -1 2729 40 0 0 chrX 38921324 38921627 -123678303 + AluY SINE Alu 1 303 -8 180 0 0 0 chrX 38921719 38921739 -123678191 + (TAA)n Simple_repeat Simple_repeat 2 21 0 373 308 0 0 chrX 38921743 38921834 -123678096 - MLT1K LTR MaLR -358 230 140 187 296 0 57 chrX 38922500 38922588 -123677342 + MIR SINE MIR 20 102 -160 1515 178 0 75 chrX 38922761 38923093 -123676837 + AluJb SINE Alu 1 307 -5 2422 90 0 6 chrX 38923148 38923459 -123676471 + AluSg SINE Alu 1 309 -1 2705 43 0 0 chrX 38924006 38924308 -123675622 + AluY SINE Alu 1 302 -9 180 0 0 0 chrX 38924400 38924420 -123675510 + (TAA)n Simple_repeat Simple_repeat 2 21 0 373 308 0 0 chrX 38924424 38924515 -123675415 - MLT1K LTR MaLR -358 230 140 187 296 0 57 chrX 38925181 38925269 -123674661 + MIR SINE MIR 20 102 -160 2919 10 0 0 chrX 38925296 38925607 -123674323 - AluY SINE Alu 0 311 1 1499 177 0 78 chrX 38925768 38926101 -123673829 + AluJb SINE Alu 1 307 -5 2262 92 0 0 chrX 38926156 38926468 -123673462 + AluSg SINE Alu 1 312 0 246 286 46 81 chrX 38926488 38926645 -123673285 - MIR SINE MIR -62 146 31 184 286 82 51 chrX 38926670 38926768 -123673162 + MIR SINE MIR 115 215 -47 828 167 0 0 chrX 38927287 38927425 -123672505 - FRAM SINE Alu -1 175 38 216 97 0 0 chrX 38927473 38927504 -123672426 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 1469 191 169 27 chrX 38927817 38928226 -123671704 - MLT1C LTR MaLR 0 467 1 1456 187 17 27 chrX 38928706 38929006 -123670924 + MLT1A1 LTR MaLR 1 297 -68 2547 54 0 0 chrX 38929041 38929338 -123670592 + AluY SINE Alu 1 297 -14 361 100 83 0 chrX 38929476 38929536 -123670394 + MLT1A1 LTR MaLR 290 354 -11 299 96 19 0 chrX 38930508 38930560 -123669370 + (TC)n Simple_repeat Simple_repeat 1 53 0 1330 241 74 43 chrX 38930819 38931238 -123668692 + LTR16A1 LTR ERVL 9 440 -17 364 281 62 8 chrX 38931711 38931839 -123668091 - MIR SINE MIR -112 150 16 1178 208 78 20 chrX 38932078 38932574 -123667356 + MLT1G1 LTR MaLR 1 543 -12 193 289 78 70 chrX 38932729 38932871 -123667059 + L2 LINE L2 3160 3302 -11 565 278 54 10 chrX 38933076 38933281 -123666649 + MIR SINE MIR 46 259 -3 210 329 71 0 chrX 38933795 38933865 -123666065 + MER91C DNA MER1_type 31 105 -35 250 286 41 0 chrX 38934551 38934649 -123665281 - L3b LINE CR1 -200 1383 1282 2317 114 3 0 chrX 38934756 38935062 -123664868 - AluSx SINE Alu -5 307 1 420 252 133 26 chrX 38935398 38935549 -123664381 - MIR SINE MIR -68 194 28 673 242 67 6 chrX 38936000 38936165 -123663765 - FAM SINE Alu 0 175 1 1022 242 99 68 chrX 38936213 38936318 -123663612 + L1MC4a LINE L1 5520 5620 -2188 1614 254 33 35 chrX 38936318 38936774 -123663156 - LTR16A1 LTR ERVL 0 457 3 1022 242 99 68 chrX 38936774 38936972 -123662958 + L1MC4a LINE L1 5620 5840 -1968 1846 137 10 40 chrX 38936972 38937271 -123662659 + AluJo SINE Alu 13 302 -10 1022 242 99 68 chrX 38937271 38937350 -123662580 + L1MC4a LINE L1 5840 5915 -1893 329 42 0 21 chrX 38937365 38937412 -123662518 + (CA)n Simple_repeat Simple_repeat 1 93 0 329 42 0 21 chrX 38937412 38937460 -123662470 + (CA)n Simple_repeat Simple_repeat 2 48 0 1579 170 30 104 chrX 38937602 38937996 -123661934 - MLT1A1 LTR MaLR 0 365 1 392 118 15 0 chrX 38938034 38938102 -123661828 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 335 184 133 20 chrX 38938546 38938644 -123661286 + MER103 DNA DNA 45 153 -13 1133 266 119 29 chrX 38938652 38939073 -123660857 - MLT1H1 LTR MaLR -96 459 1 1554 143 101 8 chrX 38939609 38939867 -123660063 - AluJb SINE Alu -30 282 1 2192 90 0 21 chrX 38939985 38940299 -123659631 - AluSx SINE Alu 0 308 1 2410 86 0 3 chrX 38940972 38941274 -123658656 + AluSx SINE Alu 1 301 -11 240 290 0 14 chrX 38941406 38941475 -123658455 - MIR3 SINE MIR -3 205 138 248 273 93 29 chrX 38941815 38941954 -123657976 + MLT2E LTR ERVL 475 622 -6 3727 93 16 84 chrX 38943048 38943261 -123656669 + L1PA16 LINE L1 5565 5791 -375 2100 125 7 3 chrX 38943261 38943564 -123656366 + AluSx SINE Alu 1 304 -8 3727 93 16 84 chrX 38943564 38943996 -123655934 + L1PA16 LINE L1 5791 6166 0 1985 85 0 120 chrX 38944004 38944345 -123655585 + AluSg SINE Alu 1 300 0 1960 146 3 13 chrX 38944680 38944981 -123654949 + AluJo SINE Alu 1 298 -14 5898 138 44 5 chrX 38944988 38945962 -123653968 - L1MC1 LINE L1 -6 6327 5316 1011 161 0 0 chrX 38946372 38946552 -123653378 + (TA)n Simple_repeat Simple_repeat 1 180 0 2059 139 0 16 chrX 38946771 38947074 -123652856 + AluJo SINE Alu 1 298 -14 1695 97 9 0 chrX 38948761 38948988 -123650942 - MER30 DNA MER1_type 0 230 2 1101 101 0 36 chrX 38949010 38949169 -123650761 + MLT1A1 LTR MaLR 1 155 -210 781 188 0 0 chrX 38949169 38949302 -123650628 + FLAM_A SINE Alu 1 133 0 183 156 0 0 chrX 38949312 38949344 -123650586 + GA-rich Low_complexity Low_complexity 2 33 0 * 1004 105 12 0 chrX 38949342 38949403 -123650527 + (GGAA)n Simple_repeat Simple_repeat 4 63 -104 2031 130 0 52 chrX 38949403 38949727 -123650203 + AluSx SINE Alu 5 311 -1 1004 105 12 0 chrX 38949727 38949827 -123650103 + (GGAA)n Simple_repeat Simple_repeat 63 167 0 1144 169 14 10 chrX 38949834 38950041 -123649889 + MLT1A1 LTR MaLR 156 363 -2 2089 153 72 25 chrX 38950045 38950450 -123649480 - MSTA LTR MaLR 0 428 5 1935 133 22 35 chrX 38951287 38951633 -123648297 + AluJb SINE Alu 1 342 0 25 0 0 50 chrX 38951643 38951659 -123648271 + AT_rich Low_complexity Low_complexity 1 16 -22 2166 126 0 0 chrX 38951659 38951944 -123647986 + AluSx SINE Alu 1 285 -27 270 0 0 0 chrX 38951944 38951974 -123647956 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 25 0 0 50 chrX 38951974 38951996 -123647934 + AT_rich Low_complexity Low_complexity 14 38 0 2121 126 0 3 chrX 38952998 38953300 -123646630 + AluY SINE Alu 1 301 -10 639 233 68 23 chrX 38953581 38953847 -123646083 + L1MC5 LINE L1 7411 7688 -273 1082 235 82 132 chrX 38953881 38954564 -123645366 + MER77 LTR ERV1 21 698 -6 421 254 89 52 chrX 38954564 38954777 -123645153 + L1MC5 LINE L1 7696 7916 -45 3038 210 9 25 chrX 38954832 38955466 -123644464 + MLT1E3 LTR MaLR 1 624 0 183 80 0 0 chrX 38955562 38955587 -123644343 + (T)n Simple_repeat Simple_repeat 1 25 0 2468 97 3 0 chrX 38956258 38956568 -123643362 + AluSp SINE Alu 1 311 -2 1132 287 47 13 chrX 38957093 38957726 -123642204 + L1ME LINE L1 5086 5757 -413 1936 82 96 28 chrX 38958232 38958514 -123641416 + AluSq SINE Alu 1 301 -12 1314 232 80 32 chrX 38960148 38960549 -123639381 - LTR38 LTR ERV1 0 556 137 398 248 93 0 chrX 38960673 38960802 -123639128 - MIR3 SINE MIR -38 170 30 742 267 39 17 chrX 38961005 38961237 -123638693 - L2 LINE L2 0 3313 3077 2118 85 38 72 chrX 38961251 38961446 -123638484 - AluSp SINE Alu -6 307 126 3388 44 7 0 chrX 38961446 38961859 -123638071 - L1PA6 LINE L1 0 6154 5739 2118 85 38 72 chrX 38961859 38961981 -123637949 - AluSp SINE Alu -187 126 1 783 260 72 3 chrX 38961981 38962286 -123637644 - L2 LINE L2 -239 3074 2755 5035 87 11 31 chrX 38962776 38962938 -123636992 - LTR8 LTR ERV1 0 691 527 2346 92 3 10 chrX 38962938 38963242 -123636688 - AluSx SINE Alu -9 303 2 5035 87 11 31 chrX 38963242 38963784 -123636146 - LTR8 LTR ERV1 -164 527 1 245 56 83 0 chrX 38964679 38964715 -123635215 - LTR40b LTR ERVL -2 460 422 4317 124 11 0 chrX 38964715 38965334 -123634596 - MER41B LTR ERV1 0 635 10 507 101 0 13 chrX 38965343 38965422 -123634508 + LTR49 LTR ERV1 1 78 -517 1624 111 0 5 chrX 38965423 38965639 -123634291 + AluSq SINE Alu 1 215 -98 25 0 0 28 chrX 38965639 38965659 -123634271 + AT_rich Low_complexity Low_complexity 1 21 -14 324 0 0 0 chrX 38965659 38965695 -123634235 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 28 chrX 38965695 38965710 -123634220 + AT_rich Low_complexity Low_complexity 21 35 0 372 71 0 0 chrX 38965856 38965912 -123634018 + (TC)n Simple_repeat Simple_repeat 1 56 0 2228 123 0 0 chrX 38966045 38966345 -123633585 + AluSx SINE Alu 1 300 -12 1322 106 0 41 chrX 38966466 38966684 -123633246 + L1MA5A LINE L1 6089 6297 0 700 200 14 7 chrX 38967079 38967219 -123632711 + MER5B DNA MER1_type 1 141 -37 1062 114 6 12 chrX 38967219 38967385 -123632545 + L1MB7 LINE L1 6004 6168 -16 466 205 43 5 chrX 38967385 38967574 -123632356 + GA-rich Low_complexity Low_complexity 1 181 -349 2349 98 0 3 chrX 38967574 38967871 -123632059 + AluSg1 SINE Alu 1 296 -13 466 205 43 5 chrX 38967871 38967896 -123632034 + GA-rich Low_complexity Low_complexity 181 530 0 200 239 0 0 chrX 38967898 38967944 -123631986 + MER5B DNA MER1_type 133 178 0 2067 118 3 3 chrX 38968221 38968510 -123631420 + AluSx SINE Alu 1 289 -23 2221 100 10 0 chrX 38968618 38968907 -123631023 + AluSp SINE Alu 1 292 -21 1357 178 4 13 chrX 38969181 38969406 -123630524 - MER58A DNA MER1_type 0 224 2 1841 127 3 103 chrX 38970012 38970213 -123629717 - AluSp SINE Alu -8 305 150 2274 98 0 7 chrX 38970213 38970508 -123629422 - AluSq SINE Alu -20 293 1 1841 127 3 103 chrX 38970508 38970645 -123629285 - AluSp SINE Alu -163 150 1 1100 172 0 0 chrX 38970744 38970913 -123629017 + FRAM SINE Alu 5 173 -3 975 247 69 0 chrX 38971104 38971335 -123628595 + MER69 DNA AcHobo 1 247 -979 2442 89 0 0 chrX 38972014 38972316 -123627614 - AluSx SINE Alu -10 302 1 576 200 33 33 chrX 38972411 38972561 -123627369 + L1ME3 LINE L1 6012 6161 -1 574 83 31 31 chrX 38972943 38973039 -123626891 - AluSp/q SINE Alu -6 307 212 2387 91 0 7 chrX 38973327 38973636 -123626294 + AluSx SINE Alu 1 307 -5 2555 68 0 6 chrX 38973637 38973949 -123625981 + AluY SINE Alu 1 382 0 216 292 14 0 chrX 38973949 38974021 -123625909 + A-rich Low_complexity Low_complexity 3 180 0 1876 114 114 0 chrX 38974392 38974665 -123625265 - AluSx SINE Alu -8 304 1 4590 149 15 42 chrX 38974686 38974951 -123624979 - L1PB4 LINE L1 -96 6060 5789 1815 154 0 55 chrX 38974951 38975276 -123624654 - AluJo SINE Alu -5 307 1 4590 149 15 42 chrX 38975276 38975622 -123624308 - L1PB4 LINE L1 -367 5789 5435 2594 68 0 3 chrX 38975622 38975932 -123623998 + AluSc SINE Alu 1 309 0 4590 149 15 42 chrX 38975932 38976781 -123623149 - L1PB4 LINE L1 -721 5435 4624 2409 89 16 0 chrX 38976782 38977086 -123622844 - AluSx SINE Alu -3 309 1 391 229 29 81 chrX 38977179 38977389 -123622541 + L1MC4 LINE L1 7843 8041 -1 1933 143 14 4 chrX 38977505 38977810 -123622120 + AluSx SINE Alu 3 310 0 2293 85 3 57 chrX 38977829 38978160 -123621770 + AluSp SINE Alu 1 313 0 2254 93 3 3 chrX 38978304 38978593 -123621337 + AluSq SINE Alu 1 289 -24 1849 169 0 22 chrX 38978660 38978979 -123620951 - AluJo SINE Alu 0 312 1 23 33 0 0 chrX 38979061 38979091 -123620839 + AT_rich Low_complexity Low_complexity 1 30 0 2455 78 7 0 chrX 38979428 38979735 -123620195 - AluSg SINE Alu -1 309 1 1721 234 52 25 chrX 38979770 38980047 -123619883 + L1ME1 LINE L1 5383 5680 -486 2410 91 3 0 chrX 38980047 38980356 -123619574 + AluSx SINE Alu 1 310 -2 1721 234 52 25 chrX 38980356 38980560 -123619370 + L1ME1 LINE L1 5680 5877 -289 184 271 68 0 chrX 38980720 38980779 -123619151 - MIR3 SINE MIR -1 207 145 1867 132 14 7 chrX 38980985 38981294 -123618636 - AluSx SINE Alu 0 311 1 2420 75 0 7 chrX 38981309 38981615 -123618315 - AluY SINE Alu -1 310 7 831 158 79 24 chrX 38981849 38982013 -123617917 - AluJo SINE Alu -13 299 127 2054 104 0 98 chrX 38982078 38982414 -123617516 - AluSx SINE Alu -7 305 3 1521 148 0 35 chrX 38982876 38983106 -123616824 + AluSx SINE Alu 1 222 -90 1941 210 43 77 chrX 38983106 38983740 -123616190 - LTR9 LTR ERV1 0 612 1 325 132 0 19 chrX 38983816 38983869 -123616061 + Alu SINE Alu 242 293 -7 2299 100 3 3 chrX 38984042 38984351 -123615579 + AluSc SINE Alu 1 309 0 1670 121 83 7 chrX 38984523 38984812 -123615118 - AluSq SINE Alu -2 311 1 2453 68 0 0 chrX 38984925 38985219 -123614711 - AluY SINE Alu -17 294 1 2296 118 0 6 chrX 38985385 38985698 -123614232 - AluSq SINE Alu -2 311 1 2083 129 0 7 chrX 38985783 38986078 -123613852 + AluSx SINE Alu 1 293 -19 306 73 0 0 chrX 38986078 38986119 -123613811 + (TA)n Simple_repeat Simple_repeat 2 42 0 1045 166 34 53 chrX 38986153 38986418 -123613512 + L1MB4 LINE L1 5763 6022 -158 4041 181 88 32 chrX 38986421 38987231 -123612699 + MER21B LTR ERV1 3 863 0 716 137 36 65 chrX 38987242 38987410 -123612520 + L1MB4 LINE L1 6018 6180 0 4317 135 39 17 chrX 38987619 38988315 -123611615 - MER50 LTR ERV1 -23 711 1 945 271 74 17 chrX 38988468 38989091 -123610839 + L1MC/D LINE L1 4820 5491 -750 * 1106 215 83 3 chrX 38989088 38989376 -123610554 - L1M4 LINE L1 -2005 4141 3831 * 2772 210 66 40 chrX 38989374 38989841 -123610089 - L1MA9 LINE L1 -42 6270 5776 180 77 0 0 chrX 38989841 38989867 -123610063 + (TA)n Simple_repeat Simple_repeat 1 26 0 2772 210 66 40 chrX 38989867 38990142 -123609788 - L1MA9 LINE L1 -536 5776 5509 1875 189 3 6 chrX 38990153 38990465 -123609465 - AluJo SINE Alu -1 311 1 1176 250 24 62 chrX 38990465 38990573 -123609357 - L1M4 LINE L1 -2295 3851 3740 2525 84 3 0 chrX 38990573 38990884 -123609046 - AluSx SINE Alu 0 312 1 1176 250 24 62 chrX 38990884 38991166 -123608764 - L1M4 LINE L1 -2406 3740 3481 2492 78 3 0 chrX 38991166 38991475 -123608455 + AluSg SINE Alu 1 310 0 1176 250 24 62 chrX 38991475 38991579 -123608351 - L1M4 LINE L1 -2665 3481 3375 306 250 0 0 chrX 38991576 38991644 -123608286 + L1MC5 LINE L1 7051 7118 -843 * 866 133 0 0 chrX 38991682 38991802 -123608128 + FLAM_C SINE Alu 2 121 -12 1645 174 0 83 chrX 38991906 38992245 -123607685 + AluJo SINE Alu 1 311 -1 241 222 39 33 chrX 38992315 38993070 -123606860 + L1MC4 LINE L1 7261 8036 -6 2341 93 0 10 chrX 38993070 38993371 -123606559 + AluSc SINE Alu 1 298 -11 2178 102 24 0 chrX 38993447 38993741 -123606189 + AluSx SINE Alu 1 301 -11 2328 86 30 0 chrX 38994273 38994577 -123605353 - AluSp SINE Alu 0 313 1 498 259 62 16 chrX 38994703 38994896 -123605034 + HAL1 LINE L1 1391 1592 -915 360 107 4 0 chrX 38995019 38995075 -123604855 + Alu SINE Alu 1 44 -256 1420 123 0 0 chrX 38995077 38995272 -123604658 + AluSg/x SINE Alu 108 302 -8 2184 95 0 38 chrX 38995345 38995484 -123604446 + AluSx SINE Alu 1 144 -168 2271 102 7 7 chrX 38995484 38995788 -123604142 + AluSx SINE Alu 1 304 -8 2184 95 0 38 chrX 38995788 38995965 -123603965 + AluSx SINE Alu 144 305 -7 324 326 0 0 chrX 38996121 38996219 -123603711 - L1MDa LINE L1 -3999 2541 2444 390 249 95 83 chrX 38996480 38996693 -123603237 + LTR16A1 LTR ERVL 1 219 -238 2092 83 49 3 chrX 38996693 38996981 -123602949 + AluSg SINE Alu 2 302 -8 390 249 95 83 chrX 38996981 38997020 -123602910 + LTR16A1 LTR ERVL 219 256 -201 330 129 0 86 chrX 38997023 38997093 -123602837 - MLT1D LTR MaLR -2 503 440 906 208 115 67 chrX 38997097 38997366 -123602564 + AluJo SINE Alu 1 282 -30 25 0 0 0 chrX 38997366 38997391 -123602539 + AT_rich Low_complexity Low_complexity 1 25 0 1788 204 68 19 chrX 38997399 38997825 -123602105 - MLT1D LTR MaLR -58 447 1 300 258 0 0 chrX 38997825 38997891 -123602039 + LTR16A1 LTR ERVL 253 318 -139 2152 107 0 32 chrX 38997918 38998228 -123601702 + AluSx SINE Alu 2 301 -11 2313 93 3 10 chrX 38998486 38998786 -123601144 - AluSx SINE Alu -14 298 1 344 277 62 0 chrX 38998930 38999060 -123600870 - L1ME4a LINE L1 0 6121 5984 1120 167 0 0 chrX 38999187 38999355 -123600575 + FAM SINE Alu 1 168 -7 246 287 58 0 chrX 38999417 38999551 -123600379 + HAL1b LINE L1 840 2371 -136 52 30 0 0 chrX 38999650 38999716 -123600214 + AT_rich Low_complexity Low_complexity 1 66 0 642 116 0 147 chrX 38999735 38999864 -123600066 - FLAM_C SINE Alu -32 111 2 27 0 0 0 chrX 38999867 38999894 -123600036 + AT_rich Low_complexity Low_complexity 1 27 0 1150 47 0 0 chrX 39000148 39000277 -123599653 + AluY SINE Alu 1 129 -182 2094 107 11 0 chrX 39000480 39000791 -123599139 - AluSx SINE Alu 0 314 1 2465 63 0 32 chrX 39001707 39002022 -123597908 + AluY SINE Alu 1 305 -6 2403 100 0 3 chrX 39002880 39003190 -123596740 + AluSx SINE Alu 1 309 -3 1565 168 118 1 chrX 39003905 39004235 -123595695 + L1MB4 LINE L1 5813 6179 -1 449 245 64 64 chrX 39004640 39004828 -123595102 + L1MC4 LINE L1 7471 7658 -384 1544 156 86 0 chrX 39004848 39005104 -123594826 - AluJo SINE Alu -33 279 2 1881 138 34 10 chrX 39005188 39005485 -123594445 + AluJo SINE Alu 1 304 -8 993 139 0 45 chrX 39005531 39005759 -123594171 + AluJb SINE Alu 1 312 0 2282 94 0 3 chrX 39005765 39006062 -123593868 + AluSg SINE Alu 1 296 -14 623 236 80 34 chrX 39006122 39006359 -123593571 + L1MC4 LINE L1 7795 8042 0 26 50 0 0 chrX 39006459 39006499 -123593431 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chrX 39006986 39007007 -123592923 + AT_rich Low_complexity Low_complexity 1 21 0 184 303 189 51 chrX 39007118 39007293 -123592637 - L2 LINE L2 -1 3312 3114 22 70 0 0 chrX 39007390 39007433 -123592497 + AT_rich Low_complexity Low_complexity 1 43 0 2550 53 3 0 chrX 39008310 39008610 -123591320 - AluY SINE Alu -9 302 2 757 132 26 0 chrX 39009478 39009592 -123590338 - FLAM_C SINE Alu -26 117 1 30 0 0 0 chrX 39009907 39009937 -123589993 + AT_rich Low_complexity Low_complexity 1 30 0 2144 122 0 0 chrX 39009940 39010226 -123589704 + AluSx SINE Alu 1 286 -26 1656 139 14 48 chrX 39010250 39010544 -123589386 + AluSx SINE Alu 1 284 -28 439 106 30 0 chrX 39010478 39010544 -123589386 + AluSg/x SINE Alu 215 304 0 199 0 0 0 chrX 39010544 39010566 -123589364 + (TAAA)n Simple_repeat Simple_repeat 2 120 0 1875 156 7 3 chrX 39010576 39010865 -123589065 + AluJo SINE Alu 1 290 -22 535 114 0 49 chrX 39010865 39010988 -123588942 + (CA)n Simple_repeat Simple_repeat 1 117 0 601 238 7 66 chrX 39011017 39011168 -123588762 - HAL1 LINE L1 -1708 799 658 664 185 39 135 chrX 39011171 39011382 -123588548 + HAL1 LINE L1 772 955 -1552 351 0 0 0 chrX 39011382 39011421 -123588509 + (CA)n Simple_repeat Simple_repeat 2 40 0 664 185 39 135 chrX 39011421 39011468 -123588462 + HAL1 LINE L1 955 1005 -1502 954 110 144 0 chrX 39011468 39011641 -123588289 + L1MC3 LINE L1 6901 7098 -687 335 217 33 11 chrX 39011642 39011729 -123588201 + MLT1F1 LTR MaLR 37 126 -437 2089 130 7 3 chrX 39011729 39012030 -123587900 + AluSx SINE Alu 1 302 -10 209 176 0 20 chrX 39012137 39012174 -123587756 + (TA)n Simple_repeat Simple_repeat 2 39 -12 2325 92 3 0 chrX 39012174 39012468 -123587462 - AluSq SINE Alu -18 295 1 209 176 0 20 chrX 39012468 39012481 -123587449 + (TA)n Simple_repeat Simple_repeat 39 51 0 2585 68 3 0 chrX 39012964 39013274 -123586656 + AluY SINE Alu 1 311 0 2084 123 6 25 chrX 39013398 39013716 -123586214 + AluJb SINE Alu 1 312 0 283 180 33 0 chrX 39013722 39013783 -123586147 + HAL1 LINE L1 1120 1182 -1325 690 118 126 34 chrX 39013841 39013960 -123585970 + AluJo SINE Alu 10 139 -173 1951 227 144 79 chrX 39013966 39014481 -123585449 + HAL1 LINE L1 1167 1647 -860 1902 139 17 3 chrX 39014481 39014782 -123585148 + AluJo SINE Alu 1 305 -7 1951 227 144 79 chrX 39014782 39015002 -123584928 + HAL1 LINE L1 1647 1851 -656 2392 89 0 10 chrX 39015002 39015316 -123584614 + AluY SINE Alu 1 311 0 2486 86 0 3 chrX 39015320 39015633 -123584297 + AluSq SINE Alu 1 312 -1 2194 92 0 48 chrX 39015640 39015954 -123583976 + AluSg SINE Alu 1 299 -11 1951 227 144 79 chrX 39015954 39016463 -123583467 + HAL1 LINE L1 1858 2507 0 2093 106 3 11 chrX 39017591 39017898 -123582032 - AluSq SINE Alu 0 307 3 241 236 189 31 chrX 39018347 39018474 -123581456 + L1MC5 LINE L1 7754 7900 -61 1304 154 36 22 chrX 39018911 39019288 -123580642 + MLT1C LTR MaLR 6 380 -48 2186 107 3 0 chrX 39019293 39019583 -123580347 - AluSx SINE Alu -21 291 1 317 24 24 0 chrX 39020022 39020064 -123579866 + (TG)n Simple_repeat Simple_repeat 2 44 0 2009 162 41 62 chrX 39022856 39023240 -123576690 + MER31B LTR ERV1 1 375 -91 1777 157 3 7 chrX 39023240 39023533 -123576397 - AluJo SINE Alu -20 292 1 2009 162 41 62 chrX 39023533 39023616 -123576314 + MER31B LTR ERV1 375 458 -8 2264 91 3 26 chrX 39023924 39024232 -123575698 - AluSx SINE Alu -11 301 1 284 68 45 0 chrX 39024578 39024622 -123575308 + MADE1 DNA Mariner 35 80 0 4759 66 3 0 chrX 39024976 39025565 -123574365 - LTR10C LTR ERV1 0 591 1 2243 92 0 3 chrX 39025647 39025930 -123574000 + AluSp SINE Alu 1 282 -31 180 0 0 0 chrX 39025934 39025954 -123573976 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2184 94 0 17 chrX 39025959 39026269 -123573661 + AluSx SINE Alu 1 305 0 4583 116 35 70 chrX 39026712 39026953 -123572977 - MER4E LTR ERV1 0 779 531 1624 116 0 0 chrX 39026953 39027168 -123572762 + AluSg/x SINE Alu 92 306 -6 4583 116 35 70 chrX 39027168 39027734 -123572196 - MER4E LTR ERV1 -248 531 1 1359 129 174 34 chrX 39027769 39027906 -123572024 + AluJb SINE Alu 2 118 -184 1996 142 0 3 chrX 39027906 39028208 -123571722 + AluSx SINE Alu 1 301 -11 1359 129 174 34 chrX 39028208 39028334 -123571596 + AluJb SINE Alu 118 302 0 213 237 0 17 chrX 39028680 39028739 -123571191 + A-rich Low_complexity Low_complexity 3 60 0 5178 75 7 24 chrX 39028785 39028938 -123570992 + LTR8 LTR ERV1 1 155 -536 2005 110 3 38 chrX 39028938 39029263 -123570667 + AluSx SINE Alu 1 315 0 5178 75 7 24 chrX 39029263 39029645 -123570285 + LTR8 LTR ERV1 155 525 -166 2285 101 7 0 chrX 39029645 39029953 -123569977 + AluSq SINE Alu 1 310 -3 5178 75 7 24 chrX 39029953 39030118 -123569812 + LTR8 LTR ERV1 525 691 0 1844 162 3 3 chrX 39030268 39030565 -123569365 + AluJo SINE Alu 6 302 -10 2154 130 198 7 chrX 39030580 39030787 -123569143 + LTR54 LTR ERV1 6 172 -338 2355 98 7 0 chrX 39030787 39031094 -123568836 - AluSx SINE Alu -1 311 3 2154 130 198 7 chrX 39031094 39031310 -123568620 + LTR54 LTR ERV1 172 510 0 1985 119 7 10 chrX 39031692 39031848 -123568082 - AluSx SINE Alu -19 293 137 2620 44 0 0 chrX 39031848 39032145 -123567785 - AluY SINE Alu -14 297 1 1985 119 7 10 chrX 39032145 39032282 -123567648 - AluSx SINE Alu -175 137 1 683 253 95 5 chrX 39032832 39033022 -123566908 - MER58C DNA MER1_type -8 207 1 393 103 0 0 chrX 39033022 39033080 -123566850 - MER4E LTR ERV1 0 779 722 398 76 136 0 chrX 39033082 39033148 -123566782 - MER4A LTR ERV1 -589 75 1 3949 121 72 32 chrX 39033149 39033829 -123566101 - MER4D LTR ERV1 -196 707 1 1706 158 13 26 chrX 39034042 39034346 -123565584 - AluJb SINE Alu -12 300 1 2292 96 10 0 chrX 39034519 39034811 -123565119 + AluSg SINE Alu 1 295 -15 3902 171 30 10 chrX 39034855 39035134 -123564796 + MER72 LTR ERV1 5 277 -445 2301 110 7 0 chrX 39035134 39035433 -123564497 + AluSq SINE Alu 1 301 -12 3902 171 30 10 chrX 39035433 39035857 -123564073 + MER72 LTR ERV1 277 722 0 312 269 0 32 chrX 39035982 39036075 -123563855 - L2 LINE L2 0 3313 3224 2215 184 23 113 chrX 39036099 39036456 -123563474 - MLT2B3 LTR ERVL 0 554 273 2163 131 0 13 chrX 39036456 39036762 -123563168 + AluSx SINE Alu 1 302 -10 2215 184 23 113 chrX 39036762 39037013 -123562917 - MLT2B3 LTR ERVL -281 273 1 2029 125 3 17 chrX 39037215 39037532 -123562398 - AluSx SINE Alu 0 312 1 2274 106 0 6 chrX 39037547 39037859 -123562071 - AluSg SINE Alu 0 310 1 1151 82 0 0 chrX 39037859 39037994 -123561936 - AluSq/x SINE Alu -178 135 1 1438 190 0 16 chrX 39038020 39038273 -123561657 - MER72 LTR ERV1 -469 253 5 884 136 157 0 chrX 39038317 39038464 -123561466 - AluSg/x SINE Alu -6 304 135 1466 142 59 139 chrX 39038591 39038945 -123560985 + MLT1B LTR MaLR 1 318 -72 1934 131 11 3 chrX 39038945 39039267 -123560663 - AluSx SINE Alu 0 324 1 1466 142 59 139 chrX 39039267 39039335 -123560595 + MLT1B LTR MaLR 318 390 0 2307 92 0 0 chrX 39039738 39040057 -123559873 - AluSx SINE Alu 0 319 1 2143 87 3 14 chrX 39040308 39040621 -123559309 + AluSx SINE Alu 1 310 0 226 344 106 19 chrX 39040627 39040787 -123559143 + L1ME LINE L1 5481 5654 -467 857 137 0 0 chrX 39040789 39040913 -123559017 + FLAM_C SINE Alu 3 126 -7 249 57 0 0 chrX 39040920 39040955 -123558975 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2281 112 3 0 chrX 39040977 39041289 -123558641 + AluSq SINE Alu 1 313 0 919 146 44 0 chrX 39041320 39041478 -123558452 + L1PA16 LINE L1 6000 6164 -2 26 0 0 0 chrX 39041491 39041517 -123558413 + AT_rich Low_complexity Low_complexity 1 26 0 2299 99 3 0 chrX 39041717 39042019 -123557911 + AluSx SINE Alu 1 303 -9 1907 153 0 0 chrX 39042090 39042395 -123557535 - AluJo SINE Alu 0 305 1 398 332 42 53 chrX 39042565 39042926 -123557004 + L1MC4a LINE L1 4675 5031 -1115 2136 103 0 42 chrX 39042927 39043239 -123556691 + AluY SINE Alu 2 300 -11 1398 95 0 0 chrX 39043239 39043411 -123556519 + AluSg/x SINE Alu 134 308 -4 2208 106 30 3 chrX 39043411 39043712 -123556218 + AluSg1 SINE Alu 1 309 0 435 241 117 28 chrX 39043802 39044131 -123555799 + L1MC4a LINE L1 5127 5491 -743 668 218 12 24 chrX 39044163 39044328 -123555602 + L1MC4a LINE L1 5687 5849 -1959 485 122 0 3 chrX 39044383 39044615 -123555315 + AluSx SINE Alu 1 297 -12 22 0 0 0 chrX 39044672 39044694 -123555236 + AT_rich Low_complexity Low_complexity 1 22 0 732 169 39 8 chrX 39044694 39044824 -123555106 - AluSq/x SINE Alu -177 135 2 2502 67 0 7 chrX 39044832 39045130 -123554800 - AluSc SINE Alu -13 296 1 2732 26 3 0 chrX 39045141 39045447 -123554483 - AluY SINE Alu -4 307 1 401 71 95 71 chrX 39045449 39045533 -123554397 - L1MB8 LINE L1 0 6178 6093 2500 146 46 72 chrX 39045552 39045910 -123554020 - L1MB4 LINE L1 -6 6174 5833 1724 128 4 0 chrX 39045910 39046159 -123553771 - AluSx SINE Alu -62 250 1 2500 146 46 72 chrX 39046159 39046326 -123553604 - L1MB4 LINE L1 -347 5833 5663 1852 105 79 0 chrX 39046416 39046682 -123553248 + AluSq SINE Alu 3 289 -24 2626 47 0 0 chrX 39047446 39047745 -123552185 + AluY SINE Alu 1 299 -12 2232 111 3 0 chrX 39048332 39048630 -123551300 + AluSx SINE Alu 1 299 -13 800 159 0 8 chrX 39048664 39048790 -123551140 - FLAM_C SINE Alu -8 125 1 2170 129 0 0 chrX 39049207 39049509 -123550421 + AluSx SINE Alu 1 302 -10 2248 99 13 3 chrX 39049528 39049831 -123550099 + AluSx SINE Alu 1 306 -6 2088 102 21 11 chrX 39051297 39051580 -123548350 + AluSg SINE Alu 5 290 -20 2189 128 0 0 chrX 39051696 39051994 -123547936 + AluSg SINE Alu 1 298 -12 269 130 22 0 chrX 39052020 39052066 -123547864 - MER41A LTR ERV1 0 554 508 1356 206 137 49 chrX 39052086 39052575 -123547355 - LTR10B LTR ERV1 -3 544 13 934 107 43 0 chrX 39052593 39052733 -123547197 - MER41A LTR ERV1 -43 511 366 1165 90 0 0 chrX 39052733 39052888 -123547042 - AluSg/x SINE Alu 0 312 158 2071 101 25 11 chrX 39052892 39053178 -123546752 - AluSx SINE Alu -22 290 1 2091 89 0 24 chrX 39053178 39053471 -123546459 - MER41A LTR ERV1 -185 369 84 627 180 0 9 chrX 39053471 39053582 -123546348 - AluJ SINE Alu -68 244 135 815 87 36 80 chrX 39053582 39053720 -123546210 - AluJ SINE Alu -170 132 1 414 244 272 22 chrX 39053724 39053904 -123546026 + MIR SINE MIR 21 245 -17 2242 109 3 0 chrX 39053907 39054201 -123545729 + AluSx SINE Alu 1 295 -17 2147 125 3 0 chrX 39054724 39055019 -123544911 - AluSx SINE Alu -16 296 1 9320 79 19 130 chrX 39055551 39055836 -123544094 + Tigger1 DNA MER2_type 2 317 -2101 2492 84 0 0 chrX 39055836 39056144 -123543786 - AluSq SINE Alu -5 308 1 9320 79 19 130 chrX 39056144 39056221 -123543709 + Tigger1 DNA MER2_type 317 401 -2017 2103 116 3 31 chrX 39056221 39056541 -123543389 - AluSq SINE Alu -2 311 1 9320 79 19 130 chrX 39056541 39057731 -123542199 + Tigger1 DNA MER2_type 401 1721 -697 2329 116 0 0 chrX 39057731 39058041 -123541889 - AluSg SINE Alu 0 310 1 9320 79 19 130 chrX 39058041 39058069 -123541861 + Tigger1 DNA MER2_type 1721 1395 -1023 2087 84 0 0 chrX 39058069 39058320 -123541610 - AluSc SINE Alu -58 251 1 9320 79 19 130 chrX 39058320 39058400 -123541530 + Tigger1 DNA MER2_type 1394 1481 -937 2046 125 3 3 chrX 39058400 39058727 -123541203 + AluSp SINE Alu 1 313 0 2344 101 0 0 chrX 39058736 39059044 -123540886 + AluSg SINE Alu 1 308 -2 914 138 66 30 chrX 39059071 39059238 -123540692 + FAM SINE Alu 1 46 -3 5922 133 20 5 chrX 39059246 39059734 -123540196 + Tigger1 DNA MER2_type 1465 1975 -443 2083 123 0 16 chrX 39059734 39060051 -123539879 - AluSx SINE Alu 0 312 1 5922 133 20 5 chrX 39060051 39060502 -123539428 + Tigger1 DNA MER2_type 1975 2418 0 195 42 0 0 chrX 39060506 39060530 -123539400 + (TATATG)n Simple_repeat Simple_repeat 5 28 0 2089 145 0 13 chrX 39060686 39060997 -123538933 + AluJo SINE Alu 1 307 -5 2259 116 3 0 chrX 39061038 39061332 -123538598 + AluSx SINE Alu 2 296 -16 208 0 0 0 chrX 39061433 39061456 -123538474 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2249 99 0 0 chrX 39061456 39061738 -123538192 - AluSg SINE Alu -28 282 1 207 0 0 0 chrX 39061745 39061768 -123538162 + (T)n Simple_repeat Simple_repeat 1 23 0 2850 75 13 5 chrX 39061791 39062163 -123537767 + THE1C LTR MaLR 1 375 0 10593 113 33 12 chrX 39062164 39063522 -123536408 + THE1C-int LTR MaLR 2 1398 -182 2232 122 0 3 chrX 39063522 39063825 -123536105 + AluSq SINE Alu 1 302 -11 10593 113 33 12 chrX 39063825 39064012 -123535918 + THE1C-int LTR MaLR 1398 1580 0 2334 91 18 35 chrX 39064027 39064148 -123535782 + THE1C LTR MaLR 41 163 -212 2073 142 7 0 chrX 39064148 39064451 -123535479 - AluSx SINE Alu -7 305 1 2334 91 18 35 chrX 39064451 39064670 -123535260 + THE1C LTR MaLR 163 375 0 1224 233 43 16 chrX 39064847 39065175 -123534755 + MLT1E LTR MaLR 1 439 -154 1636 170 66 10 chrX 39065175 39065463 -123534467 + AluJo SINE Alu 3 306 -6 1224 233 43 16 chrX 39065463 39065617 -123534313 + MLT1E LTR MaLR 439 587 -6 1486 211 43 56 chrX 39065623 39065934 -123533996 + MLT1E-int LTR MaLR 1 315 -1056 2199 134 3 0 chrX 39065934 39066241 -123533689 - AluSx SINE Alu -4 308 1 1486 211 43 56 chrX 39066241 39066455 -123533475 + MLT1E-int LTR MaLR 315 638 -733 1974 117 35 90 chrX 39066507 39066797 -123533133 - MER7A DNA MER2_type -2692 346 42 1468 183 17 31 chrX 39066797 39067086 -123532844 - AluJo SINE Alu -10 302 18 1974 117 35 90 chrX 39067086 39067105 -123532825 - MER7A DNA MER2_type -2996 42 24 2177 114 0 35 chrX 39067105 39067276 -123532654 - AluSx SINE Alu -8 304 147 2411 78 0 7 chrX 39067276 39067572 -123532358 - AluSc SINE Alu -15 294 1 2177 114 0 35 chrX 39067572 39067715 -123532215 - AluSx SINE Alu -165 147 1 1974 117 35 90 chrX 39067715 39067771 -123532159 - MER7A DNA MER2_type -3014 24 2 269 265 59 0 chrX 39068006 39068074 -123531856 + MLT1E-int LTR MaLR 820 891 -480 286 241 0 0 chrX 39068176 39068234 -123531696 + MLT1E-int LTR MaLR 962 1019 -352 2303 103 0 3 chrX 39068264 39068564 -123531366 - AluSx SINE Alu -13 299 1 455 144 9 90 chrX 39068604 39068715 -123531215 + MLT1F LTR MaLR 441 542 0 2155 115 0 26 chrX 39068796 39069109 -123530821 + AluSx SINE Alu 1 305 -7 1375 137 208 8 chrX 39069109 39069350 -123530580 + AluSg1 SINE Alu 1 289 -20 2281 101 7 7 chrX 39069410 39069718 -123530212 - AluSg SINE Alu 0 310 3 282 238 19 19 chrX 39069760 39069891 -123530039 - L1M3 LINE L1 -366 5798 5726 270 0 43 43 chrX 39069891 39069938 -123529992 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 832 216 5 26 chrX 39069940 39069986 -123529944 - AluJb SINE Alu -2 310 265 4873 90 16 42 chrX 39069986 39070521 -123529409 + LTR8 LTR ERV1 1 549 -142 2419 79 0 0 chrX 39070521 39070812 -123529118 + AluSg SINE Alu 1 291 -19 2320 107 3 0 chrX 39070822 39071130 -123528800 + AluSp SINE Alu 1 309 -4 4873 90 16 42 chrX 39071130 39071293 -123528637 + LTR8 LTR ERV1 558 691 0 832 216 5 26 chrX 39071293 39071436 -123528494 - AluJb SINE Alu -47 265 125 968 142 0 0 chrX 39071450 39071591 -123528339 - FLAM_C SINE Alu 0 143 3 2133 121 14 0 chrX 39071648 39071945 -123527985 - AluSx SINE Alu -11 301 1 682 240 47 0 chrX 39071947 39072097 -123527833 - MER63 DNA MER1_type -279 783 1 428 237 92 16 chrX 39072122 39072345 -123527585 - L1M3 LINE L1 -462 5659 5423 * 458 222 27 97 chrX 39072342 39072527 -123527403 - L1MA10 LINE L1 -1 6333 6162 1135 139 25 64 chrX 39072530 39072574 -123527356 - MLT1A1 LTR MaLR 0 365 321 2520 61 0 3 chrX 39072574 39072870 -123527060 + AluY SINE Alu 1 295 -16 1135 139 25 64 chrX 39072870 39073027 -123526903 - MLT1A1 LTR MaLR -44 321 172 832 137 7 52 chrX 39073032 39073185 -123526745 + Ricksha DNA DNA 202 347 -2899 1416 141 0 41 chrX 39073185 39073405 -123526525 + MLT2B2 LTR ERVL 1 211 -304 468 0 0 0 chrX 39073409 39073461 -123526469 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 270 150 0 0 chrX 39073469 39073509 -123526421 + AluS SINE Alu 232 271 -31 677 149 6 0 chrX 39073511 39073686 -123526244 + (TA)n Simple_repeat Simple_repeat 2 177 0 327 25 0 0 chrX 39073688 39073728 -123526202 + (CA)n Simple_repeat Simple_repeat 2 41 0 597 143 10 0 chrX 39073728 39073826 -123526104 - AluJ/FLAM SINE Alu -211 101 3 1894 176 49 42 chrX 39073828 39074255 -123525675 - L1ME1 LINE L1 -340 5826 5397 570 120 9 65 chrX 39074282 39074390 -123525540 - AluJo SINE Alu -91 221 120 1415 165 70 6 chrX 39074390 39074706 -123525224 - L1ME1 LINE L1 -761 5385 5050 1316 203 69 74 chrX 39074744 39074837 -123525093 + L1MEc LINE L1 1543 1635 -4761 2259 70 0 0 chrX 39074837 39075108 -123524822 + AluSg SINE Alu 31 301 -9 1316 203 69 74 chrX 39075108 39075185 -123524745 + L1MEc LINE L1 1635 1711 -4685 1509 153 0 0 chrX 39075185 39075408 -123524522 + AluJb SINE Alu 85 307 -5 1316 203 69 74 chrX 39075408 39075500 -123524430 + L1MEc LINE L1 1711 1802 -4594 1648 216 84 53 chrX 39075500 39075559 -123524371 - MLT1D LTR MaLR 0 505 449 2111 98 7 39 chrX 39075559 39075865 -123524065 - AluSx SINE Alu -16 296 1 1648 216 84 53 chrX 39075865 39076295 -123523635 - MLT1D LTR MaLR -56 449 1 1316 203 69 74 chrX 39076295 39076464 -123523466 + L1MEc LINE L1 1802 1974 -4422 26 30 0 0 chrX 39076476 39076509 -123523421 + AT_rich Low_complexity Low_complexity 1 33 0 270 174 0 0 chrX 39076519 39076565 -123523365 + MSTA LTR MaLR 1 46 -382 1557 138 23 112 chrX 39076570 39076918 -123523012 - AluYb8 SINE Alu -1 317 1 1056 90 0 0 chrX 39076942 39077075 -123522855 - AluSq/x SINE Alu -180 133 1 424 192 0 0 chrX 39077077 39077150 -123522780 + MSTA LTR MaLR 38 110 -318 * 901 97 152 0 chrX 39077145 39077290 -123522640 + MSTA LTR MaLR 250 416 -12 734 160 0 17 chrX 39077290 39077409 -123522521 - FLAM_C SINE Alu -25 118 2 1734 195 0 0 chrX 39077595 39077892 -123522038 + AluJb SINE Alu 1 297 -15 281 289 199 21 chrX 39077893 39078184 -123521746 - L1ME LINE L1 -563 5599 5257 1911 118 0 0 chrX 39078222 39078477 -123521453 + AluSq SINE Alu 1 255 -58 2288 110 3 0 chrX 39078490 39078791 -123521139 + AluSp SINE Alu 1 302 -11 1939 129 18 7 chrX 39078861 39079147 -123520783 - AluJb SINE Alu -13 299 11 333 293 100 46 chrX 39079251 39079592 -123520338 - L1ME1 LINE L1 -1118 5028 4658 227 235 41 41 chrX 39079656 39079734 -123520196 + L2 LINE L2 2752 2829 -485 1968 127 0 33 chrX 39079734 39079896 -123520034 - AluSx SINE Alu -22 290 124 232 47 23 23 chrX 39079896 39079939 -123519991 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2074 119 0 3 chrX 39079939 39080224 -123519706 - AluSx SINE Alu -28 284 1 1968 127 0 33 chrX 39080224 39080360 -123519570 - AluSx SINE Alu -186 126 1 227 235 41 41 chrX 39080360 39080379 -123519551 + L2 LINE L2 2828 2849 -465 243 244 23 23 chrX 39080394 39080480 -123519450 - L1ME1 LINE L1 -1488 4658 4573 867 90 0 0 chrX 39080507 39080629 -123519301 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1277 139 0 14 chrX 39080631 39080839 -123519091 - AluY SINE Alu -2 309 105 270 256 98 0 chrX 39080869 39080951 -123518979 + L1MC4 LINE L1 6614 6703 -1339 270 256 98 0 chrX 39080973 39081055 -123518875 + L1MC4 LINE L1 6614 6703 -1339 206 133 0 44 chrX 39081055 39081100 -123518830 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 258 296 23 0 chrX 39081103 39081191 -123518739 + L1MC4 LINE L1 6614 6703 -1339 838 199 12 18 chrX 39081203 39081544 -123518386 + (TATATG)n Simple_repeat Simple_repeat 1 339 0 229 289 0 0 chrX 39081545 39081597 -123518333 + (TATG)n Simple_repeat Simple_repeat 4 55 0 230 289 0 22 chrX 39081597 39081687 -123518243 + L1MC4 LINE L1 6614 6701 -1341 228 250 0 14 chrX 39081689 39081761 -123518169 + L1MCa LINE L1 1997 2067 -4359 226 296 99 0 chrX 39081713 39081794 -123518136 - L1MC4 LINE L1 -1339 6703 6615 * 228 237 0 65 chrX 39081802 39081895 -123518035 - L1MC4 LINE L1 -1342 6700 6614 595 209 26 0 chrX 39081900 39082053 -123517877 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 416 224 64 24 chrX 39082143 39082268 -123517662 - Charlie4 DNA MER1_type -1815 146 17 2260 77 0 3 chrX 39082445 39082730 -123517200 - AluSx SINE Alu -19 293 10 2254 99 3 20 chrX 39082891 39083194 -123516736 + AluSp SINE Alu 1 298 -15 2303 97 0 0 chrX 39083226 39083516 -123516414 + AluSx SINE Alu 1 290 -22 243 146 0 0 chrX 39083691 39083732 -123516198 + (TA)n Simple_repeat Simple_repeat 1 41 0 1238 135 0 0 chrX 39083732 39083910 -123516020 - AluSg/x SINE Alu -5 307 130 496 311 91 28 chrX 39084036 39084265 -123515665 - L1M4 LINE L1 -1832 4314 4048 1963 130 13 19 chrX 39084265 39084573 -123515357 + AluSx SINE Alu 1 306 -6 496 311 91 28 chrX 39084573 39084739 -123515191 - L1M4 LINE L1 -2098 4048 3894 868 148 0 0 chrX 39084761 39084883 -123515047 - FLAM_C SINE Alu -21 122 1 335 356 0 5 chrX 39084887 39085081 -123514849 - L1M4 LINE L1 -2265 3881 3689 398 249 76 93 chrX 39085320 39085545 -123514385 - L1M4 LINE L1 -2697 3449 3229 2051 115 0 33 chrX 39086152 39086457 -123513473 + AluSx SINE Alu 1 295 -17 213 284 62 25 chrX 39086515 39086596 -123513334 + L2 LINE L2 3160 3243 -29 261 284 0 0 chrX 39086606 39086673 -123513257 - MIR SINE MIR -2 260 194 946 148 9 83 chrX 39086720 39086866 -123513064 + L1MB2 LINE L1 5957 6081 -90 2309 96 0 0 chrX 39086866 39087157 -123512773 - AluSg SINE Alu -18 292 2 946 148 9 83 chrX 39087157 39087240 -123512690 + L1MB2 LINE L1 6081 6169 -2 1108 167 21 54 chrX 39087264 39087345 -123512585 + L1MB2 LINE L1 5423 5505 -663 2225 86 0 92 chrX 39087345 39087682 -123512248 + AluSq SINE Alu 1 306 -7 1108 167 21 54 chrX 39087682 39087840 -123512090 + L1MB2 LINE L1 5505 5654 -514 239 167 0 0 chrX 39087865 39087901 -123512029 - tRNA-Tyr-TAC tRNA tRNA -39 37 2 432 159 0 0 chrX 39087901 39087978 -123511952 + L1MB2 LINE L1 5655 5731 -437 314 98 0 0 chrX 39087979 39088020 -123511910 - MSTA LTR MaLR 0 428 388 1056 117 0 0 chrX 39088020 39088157 -123511773 + AluSq/x SINE Alu 1 137 -176 2062 133 3 22 chrX 39088158 39088474 -123511456 + AluSq SINE Alu 3 312 -1 1247 172 27 99 chrX 39088484 39088816 -123511114 + AluSq SINE Alu 1 308 -5 1669 119 45 48 chrX 39088818 39088869 -123511061 + L1MB2 LINE L1 5781 5831 -340 2282 123 0 0 chrX 39088869 39089179 -123510751 + AluSx SINE Alu 1 310 -2 1669 119 45 48 chrX 39089179 39089377 -123510553 + L1MB2 LINE L1 5831 6031 -140 2280 92 3 0 chrX 39089377 39089669 -123510261 - AluSq SINE Alu -20 293 1 1669 119 45 48 chrX 39089669 39089728 -123510202 + L1MB2 LINE L1 6031 6089 -82 722 104 0 0 chrX 39089757 39089853 -123510077 - AluS SINE Alu -212 100 5 1102 140 0 17 chrX 39089865 39090043 -123509887 - AluSg/x SINE Alu -2 308 134 947 194 162 35 chrX 39090043 39090358 -123509572 + MLT1D LTR MaLR 147 501 -4 739 189 15 0 chrX 39090621 39090753 -123509177 + AluJo SINE Alu 2 135 -177 730 132 0 0 chrX 39090960 39091066 -123508864 + FLAM_C SINE Alu 21 126 -17 1773 133 0 104 chrX 39091366 39091478 -123508452 + AluJo SINE Alu 1 123 -189 2183 122 6 6 chrX 39091478 39091790 -123508140 - AluSp SINE Alu -1 312 1 1773 133 0 104 chrX 39091790 39091810 -123508120 + AluJo SINE Alu 123 143 -169 2565 75 0 0 chrX 39091810 39092116 -123507814 - AluSg SINE Alu -4 306 1 2204 136 0 0 chrX 39092122 39092432 -123507498 - AluSx SINE Alu -2 310 1 1773 133 0 104 chrX 39092432 39092459 -123507471 + AluJo SINE Alu 148 176 -136 2368 75 17 0 chrX 39092459 39092751 -123507179 + AluSp SINE Alu 1 297 -16 1773 133 0 104 chrX 39092751 39092928 -123507002 + AluJo SINE Alu 176 310 -2 2327 90 0 0 chrX 39093002 39093291 -123506639 - AluSc SINE Alu -20 289 1 1400 116 5 0 chrX 39093746 39093935 -123505995 - AluJo SINE Alu -114 198 9 1981 121 62 0 chrX 39094075 39094365 -123505565 + AluSg SINE Alu 1 308 -2 2183 86 10 7 chrX 39094451 39094742 -123505188 + AluSp SINE Alu 1 292 -21 246 32 0 0 chrX 39094745 39094776 -123505154 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 192 77 0 0 chrX 39095240 39095266 -123504664 + (CAAAG)n Simple_repeat Simple_repeat 2 27 0 530 143 0 12 chrX 39095334 39095418 -123504512 - AluJ/FLAM SINE Alu -228 84 2 1692 141 0 85 chrX 39095454 39095582 -123504348 + AluJo SINE Alu 1 138 -174 2342 86 0 7 chrX 39095582 39095874 -123504056 - AluSx SINE Alu -22 290 1 1692 141 0 85 chrX 39095874 39096064 -123503866 + AluJo SINE Alu 138 292 -20 366 23 0 0 chrX 39096176 39096219 -123503711 + (TG)n Simple_repeat Simple_repeat 2 44 0 1506 143 0 5 chrX 39096252 39096476 -123503454 - AluJo SINE Alu -89 223 1 26 0 0 0 chrX 39096596 39096622 -123503308 + AT_rich Low_complexity Low_complexity 1 26 0 1232 161 83 0 chrX 39097024 39097229 -123502701 + AluJb SINE Alu 1 222 -90 21 0 0 0 chrX 39097253 39097274 -123502656 + AT_rich Low_complexity Low_complexity 1 21 0 476 179 43 79 chrX 39097535 39097642 -123502288 - L1MC/D LINE L1 -2000 5808 5706 1520 132 0 152 chrX 39097642 39097984 -123501946 + AluY SINE Alu 5 294 -17 476 179 43 79 chrX 39097984 39098016 -123501914 - L1MC/D LINE L1 -2102 5706 5674 616 115 0 185 chrX 39098047 39098204 -123501726 - FLAM_C SINE Alu -11 132 5 270 281 0 0 chrX 39098223 39098287 -123501643 - L1MC/D LINE L1 -2166 5642 5579 2125 122 0 3 chrX 39098909 39099204 -123500726 - AluSx SINE Alu -14 298 5 4920 86 6 6 chrX 39099209 39099862 -123500068 + LTR8 LTR ERV1 37 689 -2 1616 118 39 0 chrX 39099862 39100091 -123499839 - AluJo SINE Alu -74 238 1 2299 82 17 0 chrX 39100317 39100611 -123499319 + AluSx SINE Alu 1 299 -13 363 64 0 0 chrX 39100612 39100659 -123499271 - LTR8 LTR ERV1 -643 48 2 428 139 0 0 chrX 39100659 39100731 -123499199 + AluJ/FRAM SINE Alu 232 303 -9 287 252 33 70 chrX 39100826 39101062 -123498868 + LTR16C LTR ERVL 229 457 0 2480 80 0 0 chrX 39101268 39101568 -123498362 + AluSx SINE Alu 1 300 -12 1683 225 62 16 chrX 39101675 39102189 -123497741 + L1PB4 LINE L1 5273 5833 -329 1806 204 9 49 chrX 39102189 39102472 -123497458 - MLT1C LTR MaLR 0 467 174 2339 95 3 3 chrX 39102472 39102777 -123497153 - AluSg SINE Alu -5 305 1 1806 204 9 49 chrX 39102777 39102854 -123497076 - MLT1C LTR MaLR -293 174 124 2325 97 0 10 chrX 39102854 39103165 -123496765 - AluSx SINE Alu -4 308 1 1806 204 9 49 chrX 39103165 39103234 -123496696 - MLT1C LTR MaLR -343 124 54 630 210 105 139 chrX 39103270 39103342 -123496588 + L1MC4a LINE L1 5834 5907 -1901 2156 122 3 0 chrX 39103342 39103646 -123496284 + AluSx SINE Alu 4 308 -4 2253 88 0 3 chrX 39103651 39103961 -123495969 - AluSx SINE Alu 0 309 1 630 210 105 139 chrX 39103961 39104228 -123495702 + L1MC4a LINE L1 5911 6186 -1622 2157 100 4 4 chrX 39104228 39104530 -123495400 - AluSc SINE Alu 0 302 1 630 210 105 139 chrX 39104530 39104542 -123495388 + L1MC4a LINE L1 6186 6197 -1611 1691 188 7 17 chrX 39104542 39104835 -123495095 - AluJo SINE Alu -22 290 1 630 210 105 139 chrX 39104835 39105025 -123494905 + L1MC4a LINE L1 6197 6366 -1442 2278 95 3 0 chrX 39105026 39105320 -123494610 - AluSc SINE Alu -14 295 1 24 67 0 0 chrX 39105348 39105393 -123494537 + AT_rich Low_complexity Low_complexity 1 45 0 231 200 12 62 chrX 39105399 39105479 -123494451 + L1P LINE L1 3178 3253 -2893 2007 137 0 10 chrX 39105563 39105863 -123494067 - AluJb SINE Alu -12 300 4 2234 102 3 3 chrX 39105946 39106240 -123493690 - AluSc SINE Alu -15 294 1 183 204 0 0 chrX 39106250 39106294 -123493636 + T-rich Low_complexity Low_complexity 1 44 0 495 246 8 101 chrX 39106369 39106770 -123493160 + L1MC4 LINE L1 6876 7140 -821 2037 91 95 0 chrX 39106770 39107044 -123492886 + AluSx SINE Alu 1 300 -12 495 246 8 101 chrX 39107044 39107159 -123492771 + L1MC4 LINE L1 7140 7264 -697 1239 185 112 46 chrX 39107300 39107667 -123492263 + LTR37A LTR ERV1 18 408 -18 349 251 35 150 chrX 39107721 39107794 -123492136 + L1MC4 LINE L1 7346 7426 -616 2224 103 7 0 chrX 39107794 39108094 -123491836 + AluSp SINE Alu 1 302 -11 349 251 35 150 chrX 39108094 39108316 -123491614 + L1MC4 LINE L1 7426 7594 -448 1874 86 123 0 chrX 39108316 39108584 -123491346 + AluSq SINE Alu 1 301 -2 349 251 35 150 chrX 39108584 39108654 -123491276 + L1MC4 LINE L1 7594 7670 -372 1996 108 54 4 chrX 39108699 39108977 -123490953 - AluY SINE Alu -19 292 1 1821 179 55 6 chrX 39109116 39109462 -123490468 + MLT1A1 LTR MaLR 1 363 -2 1179 123 0 0 chrX 39109473 39109628 -123490302 - AluSg/x SINE Alu -20 290 136 226 333 0 0 chrX 39109703 39109790 -123490140 + L1MC5 LINE L1 7808 7894 -67 832 143 0 126 chrX 39109798 39109980 -123489950 - FAM SINE Alu -2 47 1 2218 105 3 16 chrX 39110181 39110496 -123489434 + AluSx SINE Alu 1 311 -1 180 265 0 41 chrX 39110857 39110906 -123489024 - MIR SINE MIR -129 79 33 420 269 41 47 chrX 39110920 39111091 -123488839 + MER20B DNA MER1_type 1 170 -613 2263 102 0 3 chrX 39111297 39111592 -123488338 + AluSx SINE Alu 3 296 -16 1682 163 76 7 chrX 39112037 39112325 -123487605 - AluJb SINE Alu -4 308 1 252 195 37 122 chrX 39112487 39112569 -123487361 - L2 LINE L2 0 3272 3198 1660 91 0 0 chrX 39112571 39112791 -123487139 - AluSq SINE Alu 0 313 94 1073 58 0 36 chrX 39112804 39112942 -123486988 + AluSx SINE Alu 1 133 -180 1200 158 0 0 chrX 39115688 39115908 -123484022 + AluSx SINE Alu 121 340 0 180 225 42 42 chrX 39115913 39115984 -123483946 + MIR SINE MIR 2 72 -190 1484 233 77 22 chrX 39116277 39116342 -123483588 - L1ME2 LINE L1 0 6164 6104 2061 137 0 0 chrX 39116342 39116635 -123483295 + AluSx SINE Alu 3 295 -17 1484 233 77 22 chrX 39116635 39117024 -123482906 - L1ME2 LINE L1 -60 6104 5685 2339 105 0 9 chrX 39118022 39118337 -123481593 + AluSx SINE Alu 1 312 0 749 233 90 5 chrX 39118469 39118546 -123481384 - MIR SINE MIR -19 243 174 1483 250 104 51 chrX 39118546 39119171 -123480759 - MLT2F LTR ERVL -1 662 5 749 233 90 5 chrX 39119171 39119316 -123480614 - MIR SINE MIR -88 174 2 2175 120 7 3 chrX 39119349 39119828 -123480102 + AluSx SINE Alu 1 480 0 659 326 13 8 chrX 39119830 39120069 -123479861 + L3 LINE CR1 1336 1575 -2 2371 94 0 0 chrX 39120866 39121163 -123478767 + AluSc SINE Alu 1 297 -12 989 268 105 24 chrX 39121179 39121393 -123478537 + LTR33 LTR ERVL 29 224 -297 270 0 0 0 chrX 39121393 39121423 -123478507 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2291 86 7 0 chrX 39121425 39121705 -123478225 - AluSx SINE Alu -30 282 1 989 268 105 24 chrX 39121705 39121943 -123477987 + LTR33 LTR ERVL 224 521 0 1037 205 12 37 chrX 39122129 39122223 -123477707 + MIR SINE MIR 14 109 -153 1270 145 4 40 chrX 39122223 39122450 -123477480 + MER20 DNA MER1_type 1 219 0 1037 205 12 37 chrX 39122450 39122599 -123477331 + MIR SINE MIR 109 251 -11 192 315 82 14 chrX 39122712 39122785 -123477145 + L2 LINE L2 3200 3277 -36 22 0 0 0 chrX 39123101 39123123 -123476807 + AT_rich Low_complexity Low_complexity 1 22 0 457 238 74 45 chrX 39123839 39123904 -123476026 - MIR SINE MIR -11 251 189 2069 124 10 0 chrX 39123904 39124194 -123475736 + AluSx SINE Alu 1 293 -19 192 77 0 0 chrX 39124194 39124220 -123475710 + (TATATG)n Simple_repeat Simple_repeat 4 29 0 457 238 74 45 chrX 39124220 39124355 -123475575 - MIR SINE MIR -72 190 44 2065 107 40 0 chrX 39124519 39124814 -123475116 - AluSg SINE Alu 0 306 1 207 100 0 0 chrX 39125060 39125090 -123474840 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 758 192 133 10 chrX 39125161 39125364 -123474566 - MIR SINE MIR -33 229 2 1080 212 144 99 chrX 39125569 39125970 -123473960 - MLT1G1 LTR MaLR -12 583 201 5163 74 4 40 chrX 39125970 39126097 -123473833 - LTR8 LTR ERV1 0 691 561 2483 94 0 0 chrX 39126097 39126406 -123473524 - AluSg SINE Alu -1 309 1 5163 74 4 40 chrX 39126406 39126829 -123473101 - LTR8 LTR ERV1 -130 561 170 1966 112 13 49 chrX 39126829 39127155 -123472775 - AluSg1 SINE Alu 0 309 1 5163 74 4 40 chrX 39127155 39127320 -123472610 - LTR8 LTR ERV1 -521 170 1 1080 212 144 99 chrX 39127320 39127475 -123472455 - MLT1G1 LTR MaLR -394 201 2 938 228 16 0 chrX 39127813 39128002 -123471928 + MER58A DNA MER1_type 27 218 -6 1930 151 0 3 chrX 39129436 39129728 -123470202 + AluJo SINE Alu 1 291 -21 1925 142 19 19 chrX 39129736 39130045 -123469885 + AluJo SINE Alu 1 309 -3 518 201 128 13 chrX 39130052 39130201 -123469729 + L1MC4a LINE L1 5600 5765 -2043 482 116 7 0 chrX 39130203 39130276 -123469654 - MER51B LTR ERV1 0 633 314 299 167 0 0 chrX 39130279 39130327 -123469603 - MER58 DNA MER1_type -110 231 184 2271 107 3 0 chrX 39130373 39130673 -123469257 + AluSx SINE Alu 1 301 -11 435 223 90 18 chrX 39130674 39130840 -123469090 + L1MC4a LINE L1 5818 5995 -1813 1334 247 79 28 chrX 39130860 39131317 -123468613 - LTR33A LTR ERVL -43 480 1 2400 94 0 0 chrX 39131656 39131954 -123467976 + AluSg SINE Alu 1 298 -12 1049 161 6 0 chrX 39132141 39132302 -123467628 - AluJb SINE Alu -22 290 129 2436 78 0 0 chrX 39132323 39132616 -123467314 + AluY SINE Alu 1 293 -18 2129 122 3 0 chrX 39132627 39132922 -123467008 + AluSq SINE Alu 5 300 -13 2646 136 15 31 chrX 39132922 39132969 -123466961 - L1MB2 LINE L1 -5 6166 6120 2281 103 0 3 chrX 39132969 39133269 -123466661 - AluSx SINE Alu -13 299 1 2646 136 15 31 chrX 39133269 39133568 -123466362 - L1MB2 LINE L1 -51 6120 5826 1647 168 12 59 chrX 39133568 39133741 -123466189 - AluJo SINE Alu -5 307 154 2323 104 7 0 chrX 39133741 39134050 -123465880 - AluSx SINE Alu -1 311 1 1647 168 12 59 chrX 39134050 39134198 -123465732 - AluJo SINE Alu -158 154 1 2646 136 15 31 chrX 39134198 39134305 -123465625 - L1MB2 LINE L1 -345 5826 5719 2249 98 19 3 chrX 39134321 39134628 -123465302 + AluSp SINE Alu 1 312 -1 253 303 76 17 chrX 39134867 39134986 -123464944 + MLT1L LTR MaLR 424 549 -66 183 139 0 0 chrX 39135122 39135158 -123464772 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 823 152 0 0 chrX 39135382 39135507 -123464423 - FLAM_C SINE Alu -8 125 1 1466 272 57 83 chrX 39135606 39135995 -123463935 + L1MEd LINE L1 285 683 -5627 2282 101 3 0 chrX 39135995 39136293 -123463637 + AluSx SINE Alu 1 299 -13 1466 272 57 83 chrX 39136293 39136913 -123463017 + L1MEd LINE L1 683 1318 -4992 2122 113 0 0 chrX 39136913 39137218 -123462712 + AluSx SINE Alu 1 305 0 2251 99 0 3 chrX 39137222 39137550 -123462380 + AluSx SINE Alu 1 327 0 1466 272 57 83 chrX 39137550 39137851 -123462079 + L1MEd LINE L1 1321 1614 -4696 2473 192 60 31 chrX 39137868 39138483 -123461447 + L1MEd LINE L1 2353 2985 -3144 966 160 22 22 chrX 39138483 39138664 -123461266 - MLT1A1 LTR MaLR -175 190 10 2623 43 0 10 chrX 39138719 39139020 -123460910 - AluY SINE Alu -13 298 1 238 218 143 38 chrX 39139423 39139556 -123460374 - L1M4 LINE L1 -366 5812 5666 228 252 29 87 chrX 39139663 39139766 -123460164 - L1M4 LINE L1 -2465 5530 5434 2456 84 0 0 chrX 39139773 39140070 -123459860 - AluSx SINE Alu -15 297 1 25 0 0 0 chrX 39140074 39140099 -123459831 + AT_rich Low_complexity Low_complexity 1 25 0 2386 92 10 0 chrX 39140102 39140407 -123459523 + AluSc SINE Alu 1 308 -1 370 82 0 0 chrX 39140416 39140465 -123459465 + AluSc SINE Alu 247 295 -4 429 260 38 30 chrX 39140484 39140699 -123459231 - L1M4 LINE L1 -748 5398 5198 679 157 45 165 chrX 39140741 39141008 -123458922 - L1MC5 LINE L1 -36 7925 7691 22 35 0 0 chrX 39141176 39141205 -123458725 + AT_rich Low_complexity Low_complexity 1 29 0 910 278 82 54 chrX 39141254 39141572 -123458358 - L1M4 LINE L1 -1361 4785 4477 2300 113 0 0 chrX 39141572 39141883 -123458047 + AluSx SINE Alu 1 311 -1 910 278 82 54 chrX 39141883 39142141 -123457789 - L1M4 LINE L1 -1669 4477 4185 2263 84 0 69 chrX 39142141 39142476 -123457454 - AluSx SINE Alu 0 312 1 910 278 82 54 chrX 39142476 39142584 -123457346 - L1M4 LINE L1 -1961 4185 4081 1251 196 87 7 chrX 39142619 39142895 -123457035 - MLT2F LTR ERVL 0 663 366 1335 148 51 0 chrX 39142937 39143154 -123456776 + ERVL LTR ERVL 5247 5474 -290 207 162 0 0 chrX 39143433 39143470 -123456460 + (CATA)n Simple_repeat Simple_repeat 4 40 0 2351 92 3 0 chrX 39143472 39143765 -123456165 - AluSp SINE Alu -19 294 1 298 127 0 18 chrX 39143831 39143886 -123456044 - MLT2F LTR ERVL -2 661 608 1042 241 20 45 chrX 39143929 39144140 -123455790 - MLT2F LTR ERVL -57 606 400 2757 84 17 6 chrX 39144140 39144498 -123455432 - THE1B LTR MaLR -2 362 1 1042 241 20 45 chrX 39144498 39144531 -123455399 - MLT2F LTR ERVL -263 400 368 696 238 10 7 chrX 39144539 39144743 -123455187 - MLT2F LTR ERVL -413 250 1 2300 94 3 0 chrX 39144758 39145057 -123454873 - AluSq SINE Alu -7 306 7 1781 214 80 40 chrX 39145087 39145611 -123454319 - L1ME1 LINE L1 -5 6161 5617 * 2843 226 68 25 chrX 39145608 39146000 -123453930 - L1ME1 LINE L1 -802 5344 4971 2056 133 3 0 chrX 39146000 39146285 -123453645 + AluSx SINE Alu 1 286 -26 2843 226 68 25 chrX 39146285 39146304 -123453626 - L1ME1 LINE L1 -1175 4971 4954 189 0 0 0 chrX 39146304 39146325 -123453605 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 2843 226 68 25 chrX 39146325 39146876 -123453054 - L1ME1 LINE L1 -1192 4954 4339 751 183 12 91 chrX 39146872 39146921 -123453009 - L1ME1 LINE L1 -2992 3154 3103 * 2286 91 0 7 chrX 39146921 39147232 -123452698 - AluSx SINE Alu 0 309 1 751 183 12 91 chrX 39147232 39147422 -123452508 - L1ME1 LINE L1 -3043 3103 2933 597 206 168 0 chrX 39147448 39147603 -123452327 + MLT1B LTR MaLR 210 390 0 204 40 0 0 chrX 39148943 39148968 -123450962 + (TG)n Simple_repeat Simple_repeat 1 25 0 1638 122 157 22 chrX 39149962 39150274 -123449656 + L1MB8 LINE L1 5507 5860 -324 855 164 55 33 chrX 39150279 39150462 -123449468 + L1MB8 LINE L1 5991 6177 -1 2412 82 0 3 chrX 39150470 39150773 -123449157 + AluSg SINE Alu 1 302 -8 2027 144 0 3 chrX 39150972 39151271 -123448659 - AluJb SINE Alu -14 298 1 786 328 52 28 chrX 39151463 39151924 -123448006 - MARNA DNA Mariner -8 578 107 331 340 31 5 chrX 39151924 39152108 -123447822 - MIR SINE MIR -36 226 37 1855 93 12 8 chrX 39152114 39152372 -123447558 + L1PA10 LINE L1 5889 6147 -21 2313 107 7 0 chrX 39152374 39152719 -123447211 - AluSx SINE Alu 0 347 1 34 0 0 0 chrX 39152726 39152760 -123447170 + AT_rich Low_complexity Low_complexity 1 34 0 1706 128 68 0 chrX 39152887 39153136 -123446794 - AluSg SINE Alu -39 271 6 562 257 103 49 chrX 39153762 39153791 -123446139 - MIR SINE MIR 0 262 236 2218 104 27 64 chrX 39153791 39154003 -123445927 - THE1B LTR MaLR 0 364 171 2448 99 0 0 chrX 39154003 39154307 -123445623 + AluSx SINE Alu 1 304 -8 2218 104 27 64 chrX 39154307 39154470 -123445460 - THE1B LTR MaLR -193 171 3 562 257 103 49 chrX 39154470 39154686 -123445244 - MIR SINE MIR -26 236 4 856 231 245 44 chrX 39154941 39155353 -123444577 + MLT1H LTR MaLR 40 534 -15 2045 115 0 27 chrX 39155535 39155831 -123444099 - AluSx SINE Alu -1 311 24 1959 89 46 32 chrX 39155978 39156119 -123443811 + AluSx SINE Alu 1 138 -170 2164 105 3 7 chrX 39156119 39156414 -123443516 + AluSc SINE Alu 1 294 -15 1959 89 46 32 chrX 39156414 39156576 -123443354 + AluSx SINE Alu 138 308 0 25 0 0 0 chrX 39156823 39156848 -123443082 + AT_rich Low_complexity Low_complexity 1 25 0 534 197 40 13 chrX 39156848 39157000 -123442930 - L1MC4 LINE L1 -3 8039 7884 1891 137 0 65 chrX 39157019 39157220 -123442710 - AluJb SINE Alu -9 303 129 2238 94 7 32 chrX 39157220 39157529 -123442401 - AluSq SINE Alu -12 301 1 1891 137 0 65 chrX 39157529 39157649 -123442281 - AluJb SINE Alu -183 129 3 1173 221 18 21 chrX 39157699 39157980 -123441950 - L1MC4 LINE L1 -140 7902 7623 1998 138 10 10 chrX 39157981 39158277 -123441653 - AluJo SINE Alu -13 299 4 351 51 57 0 chrX 39158281 39158334 -123441596 - FLAM SINE Alu -2 131 82 1131 119 18 18 chrX 39158336 39158504 -123441426 - AluJo SINE Alu -98 214 47 1064 160 22 0 chrX 39158506 39158687 -123441243 - L1MC4 LINE L1 -409 7633 7449 191 311 253 11 chrX 39158929 39159119 -123440811 + L3 LINE CR1 1334 1569 -8 1913 240 17 21 chrX 39159223 39159706 -123440224 + L1MC4a LINE L1 5377 5857 -1951 2326 99 3 3 chrX 39159709 39160012 -123439918 + AluSx SINE Alu 1 303 -9 2135 117 0 0 chrX 39160033 39160362 -123439568 + AluSq SINE Alu 1 329 0 2353 103 0 0 chrX 39160579 39160879 -123439051 - AluSx SINE Alu -12 300 1 865 170 0 0 chrX 39160947 39161082 -123438848 + FLAM_C SINE Alu 1 135 -8 2212 108 17 0 chrX 39161224 39161521 -123438409 + AluSx SINE Alu 1 302 -10 931 256 65 40 chrX 39161703 39162091 -123437839 + LTR16A1 LTR ERVL 82 457 0 1899 157 0 48 chrX 39162832 39162979 -123436951 + AluJo SINE Alu 1 127 -185 2176 124 7 0 chrX 39162979 39163285 -123436645 + AluSx SINE Alu 1 308 -4 1899 157 0 48 chrX 39163285 39163450 -123436480 + AluJo SINE Alu 127 298 -14 1416 187 11 89 chrX 39163458 39163507 -123436423 + MER58B DNA MER1_type 2 53 -2367 2413 100 0 0 chrX 39163507 39163816 -123436114 - AluSx SINE Alu -3 309 1 1416 187 11 89 chrX 39163816 39163864 -123436066 + MER58B DNA MER1_type 53 103 -2317 2274 95 0 0 chrX 39163864 39164186 -123435744 - AluSq SINE Alu 0 322 1 1416 187 11 89 chrX 39164186 39164394 -123435536 + MER58B DNA MER1_type 103 278 -2142 2741 173 112 18 chrX 39164394 39164966 -123434964 + MLT1E2 LTR MaLR 1 626 0 1416 187 11 89 chrX 39164966 39165026 -123434904 + MER58B DNA MER1_type 278 341 0 659 210 153 0 chrX 39165042 39165199 -123434731 + MER5A DNA MER1_type 9 189 0 1995 98 0 0 chrX 39165230 39165485 -123434445 - AluSx SINE Alu -57 255 1 645 225 50 12 chrX 39165540 39165700 -123434230 - MER110 LTR ERV1 -105 386 221 297 261 92 21 chrX 39166082 39166224 -123433706 + L2 LINE L2 3149 3300 -13 2119 133 0 3 chrX 39166876 39167178 -123432752 - AluSq SINE Alu -12 301 1 1244 192 76 112 chrX 39167731 39167954 -123431976 + LTR37B LTR ERV1 9 238 -230 2232 59 7 56 chrX 39167954 39168259 -123431671 + AluSx SINE Alu 1 290 -22 2299 81 0 20 chrX 39168268 39168566 -123431364 + AluSc SINE Alu 1 292 -17 1244 192 76 112 chrX 39168566 39168805 -123431125 + LTR37B LTR ERV1 246 464 -4 2223 89 4 0 chrX 39169224 39169532 -123430398 + AluSx SINE Alu 1 309 0 2404 88 0 3 chrX 39169542 39169839 -123430091 + AluSx SINE Alu 1 296 -16 379 83 0 0 chrX 39170247 39170295 -123429635 - MSTD LTR MaLR -1 395 348 2306 82 20 16 chrX 39170300 39170604 -123429326 - AluSc SINE Alu -4 305 1 304 185 46 56 chrX 39170970 39171078 -123428852 - L1ME4a LINE L1 -56 6065 5959 1663 186 58 65 chrX 39171088 39171371 -123428559 - MLT1C LTR MaLR -8 459 179 2254 102 0 0 chrX 39171371 39171656 -123428274 - AluSx SINE Alu -27 285 1 1663 186 58 65 chrX 39171656 39171834 -123428096 - MLT1C LTR MaLR -288 179 1 2172 103 14 3 chrX 39171880 39172170 -123427760 - AluSx SINE Alu -19 293 1 454 303 83 0 chrX 39172197 39172329 -123427601 + LTR33 LTR ERVL 55 197 -324 585 315 17 0 chrX 39172342 39172523 -123427407 + LTR33 LTR ERVL 330 513 -8 1972 178 48 30 chrX 39172564 39172583 -123427347 + LTR37B LTR ERV1 1 18 -450 2455 65 0 3 chrX 39172583 39172877 -123427053 + AluY SINE Alu 1 293 -18 306 0 0 0 chrX 39172877 39172911 -123427019 + (TA)n Simple_repeat Simple_repeat 2 35 0 1972 178 48 30 chrX 39172911 39173350 -123426580 + LTR37B LTR ERV1 17 468 0 326 191 0 0 chrX 39173407 39173470 -123426460 - L1ME4a LINE L1 -2038 5770 5708 1164 142 0 0 chrX 39173709 39173885 -123426045 - AluSg/x SINE Alu 0 312 137 243 296 47 21 chrX 39173963 39174128 -123425802 - MIR SINE MIR -26 236 13 510 188 10 21 chrX 39174336 39174432 -123425498 - MER58C DNA MER1_type 0 215 121 2051 101 3 35 chrX 39174457 39174743 -123425187 + AluSx SINE Alu 12 288 -24 23 0 0 0 chrX 39174743 39174766 -123425164 + AT_rich Low_complexity Low_complexity 1 23 0 2283 95 3 13 chrX 39174769 39175074 -123424856 + AluSg SINE Alu 1 302 -8 1403 150 0 0 chrX 39175083 39175303 -123424627 + AluSg/x SINE Alu 83 302 -8 241 206 0 151 chrX 39175312 39175336 -123424594 - MER58C DNA MER1_type -152 63 37 2387 83 7 0 chrX 39175336 39175636 -123424294 + AluSg SINE Alu 1 302 -8 241 206 0 151 chrX 39175636 39175684 -123424246 - MER58C DNA MER1_type -178 37 2 335 276 10 0 chrX 39175684 39175782 -123424148 - L1MEd LINE L1 -5108 1011 913 1259 199 7 43 chrX 39175782 39176058 -123423872 - AluJb SINE Alu -3 309 44 2776 26 0 0 chrX 39176501 39176808 -123423122 + AluY SINE Alu 1 307 -4 2148 132 3 0 chrX 39177698 39178002 -123421928 - AluSx SINE Alu -7 305 1 2512 74 3 0 chrX 39178505 39178804 -123421126 - AluSp SINE Alu -13 300 1 1454 209 16 12 chrX 39179105 39179426 -123420504 - L1ME1 LINE L1 0 6166 5845 2331 100 7 0 chrX 39179437 39179747 -123420183 - AluSx SINE Alu 0 312 1 1094 89 0 0 chrX 39179747 39179882 -123420048 - AluSq/x SINE Alu -176 137 3 2414 209 12 43 chrX 39179884 39180266 -123419664 - L1ME1 LINE L1 -315 5851 5493 2313 103 0 0 chrX 39180266 39180558 -123419372 - AluSg SINE Alu -18 292 1 2414 209 12 43 chrX 39180558 39180774 -123419156 - L1ME1 LINE L1 -673 5493 5272 2447 153 19 36 chrX 39180779 39181112 -123418818 - L1MB7 LINE L1 -19 6165 5828 2449 76 0 22 chrX 39181112 39181427 -123418503 - AluSg SINE Alu -1 309 2 2447 153 19 36 chrX 39181427 39181465 -123418465 - L1MB7 LINE L1 -356 5828 5791 2281 83 3 7 chrX 39181465 39181754 -123418176 + AluSp SINE Alu 1 288 -25 259 44 44 0 chrX 39181755 39181800 -123418130 + (TA)n Simple_repeat Simple_repeat 2 48 0 2447 153 19 36 chrX 39181800 39181897 -123418033 - L1MB7 LINE L1 -392 5792 5702 669 86 0 0 chrX 39181897 39181989 -123417941 + L1PA8 LINE L1 6080 6172 0 2554 158 31 43 chrX 39181990 39182427 -123417503 - L1MB7 LINE L1 -473 5711 5278 1890 149 3 20 chrX 39182427 39182729 -123417201 + AluJo SINE Alu 6 302 -10 2554 158 31 43 chrX 39182729 39183031 -123416899 - L1MB7 LINE L1 -906 5278 4974 229 220 20 0 chrX 39183011 39183061 -123416869 - L1MB7 LINE L1 -2294 3852 3802 * 919 214 16 21 chrX 39183090 39183277 -123416653 - L1MC4 LINE L1 -1139 6903 6718 323 227 0 30 chrX 39183283 39183349 -123416581 + MER58 DNA MER1_type 1 181 -160 2370 92 3 0 chrX 39183349 39183652 -123416278 - AluSc SINE Alu -5 304 1 420 254 71 53 chrX 39183652 39183990 -123415940 - L1MC4a LINE L1 -1318 6490 6147 329 273 45 32 chrX 39184084 39184224 -123415706 + L1M4 LINE L1 3613 3757 -2389 1957 104 0 102 chrX 39184224 39184559 -123415371 + AluSq SINE Alu 1 301 -2 329 273 45 32 chrX 39184559 39184572 -123415358 + L1M4 LINE L1 3757 3768 -2378 208 163 0 61 chrX 39184593 39184642 -123415288 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 781 268 65 4 chrX 39184649 39184895 -123415035 + MIR SINE MIR 2 262 0 358 137 0 0 chrX 39185023 39185074 -123414856 - 5S rRNA rRNA -70 51 1 1589 220 84 81 chrX 39185135 39185756 -123414174 - MER77 LTR ERV1 -8 597 67 851 266 34 48 chrX 39185837 39186328 -123413602 + MLT1H LTR MaLR 2 565 -2 236 307 92 73 chrX 39186403 39186588 -123413342 - L1ME LINE L1 -378 5743 5552 2149 80 90 7 chrX 39186588 39186876 -123413054 - AluSx SINE Alu 0 312 1 236 307 92 73 chrX 39186876 39186908 -123413022 - L1ME LINE L1 -569 5552 5522 820 210 31 97 chrX 39187107 39187249 -123412681 + MIR SINE MIR 2 121 -141 2257 106 7 0 chrX 39187249 39187551 -123412379 + AluSq SINE Alu 1 304 -9 820 210 31 97 chrX 39187551 39187665 -123412265 + MIR SINE MIR 121 241 -21 2607 72 0 0 chrX 39187804 39188111 -123411819 + AluSx SINE Alu 1 307 -5 2440 88 3 0 chrX 39188865 39189171 -123410759 + AluSp SINE Alu 1 307 -6 432 0 0 0 chrX 39189293 39189341 -123410589 + (TG)n Simple_repeat Simple_repeat 1 48 0 234 0 0 0 chrX 39189340 39189366 -123410564 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2051 108 4 7 chrX 39189367 39189646 -123410284 - AluSq SINE Alu -35 278 1 1320 223 83 85 chrX 39190687 39190746 -123409184 - MLT1G LTR MaLR 0 590 532 2312 111 0 0 chrX 39190746 39191044 -123408886 + AluSx SINE Alu 2 299 -13 1320 223 83 85 chrX 39191044 39191575 -123408355 - MLT1G LTR MaLR -58 532 1 1827 112 98 7 chrX 39191611 39191896 -123408034 - AluSx SINE Alu -1 311 1 1617 90 5 5 chrX 39194063 39194275 -123405655 - AluSq SINE Alu -101 212 1 273 228 0 76 chrX 39194764 39194843 -123405087 + L2 LINE L2 3184 3256 -16 210 118 0 0 chrX 39194845 39194879 -123405051 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1746 110 0 0 chrX 39195114 39195370 -123404560 + AluSx SINE Alu 58 313 0 2300 79 10 13 chrX 39195544 39195713 -123404217 - AluSc SINE Alu -6 303 134 2423 89 0 3 chrX 39195713 39196017 -123403913 - AluSx SINE Alu -9 303 1 2300 79 10 13 chrX 39196017 39196151 -123403779 - AluSc SINE Alu -175 134 1 598 218 16 0 chrX 39196152 39196276 -123403654 - MER105 DNA DNA -16 188 63 1945 173 76 47 chrX 39196282 39196470 -123403460 - LTR54B LTR ERV1 -11 487 306 2267 68 41 3 chrX 39196470 39196762 -123403168 - AluY SINE Alu -7 304 2 1945 173 76 47 chrX 39196762 39197046 -123402884 - LTR54B LTR ERV1 -192 306 1 2790 164 37 41 chrX 39197060 39197428 -123402502 - MLT2B2 LTR ERVL 0 515 148 2188 133 0 0 chrX 39197428 39197730 -123402200 - AluSx SINE Alu -10 302 1 2790 164 37 41 chrX 39197730 39197878 -123402052 - MLT2B2 LTR ERVL -367 148 1 253 329 13 34 chrX 39198063 39198095 -123401835 - L1ME LINE L1 -251 5870 5839 2353 84 0 3 chrX 39198095 39198391 -123401539 - AluSq SINE Alu -18 295 1 253 329 13 34 chrX 39198391 39198507 -123401423 - L1ME LINE L1 -282 5839 5725 1272 187 17 0 chrX 39198805 39199035 -123400895 - L1MC1 LINE L1 0 6333 6100 667 102 0 0 chrX 39199053 39199141 -123400789 + AluSq/x SINE Alu 23 110 -202 4793 116 0 21 chrX 39199171 39199889 -123400041 - L1MC1 LINE L1 -263 6070 5368 2361 99 0 3 chrX 39199895 39200198 -123399732 - AluSx SINE Alu -10 302 1 2198 101 7 13 chrX 39201080 39201378 -123398552 + AluSx SINE Alu 1 296 -16 2443 97 0 0 chrX 39202035 39202344 -123397586 - AluSx SINE Alu -3 309 1 311 349 79 7 chrX 39202394 39202546 -123397384 + MIR3 SINE MIR 4 166 -42 680 284 57 5 chrX 39203060 39203271 -123396659 - MIR SINE MIR -12 250 29 320 152 90 59 chrX 39203295 39203356 -123396574 - L1MD3 LINE L1 -1 8041 7983 2177 119 7 0 chrX 39203356 39203649 -123396281 + AluSx SINE Alu 1 295 -17 320 152 90 59 chrX 39203649 39203735 -123396195 - L1MD3 LINE L1 -59 7983 7880 243 200 18 18 chrX 39203744 39203799 -123396131 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2575 200 32 14 chrX 39203799 39204358 -123395572 - L1MC4 LINE L1 -131 7911 7343 2097 96 50 0 chrX 39206407 39206688 -123393242 + AluSg SINE Alu 1 295 -15 1829 103 48 48 chrX 39207048 39207343 -123392587 + AluSx SINE Alu 16 310 0 2343 94 0 0 chrX 39207343 39207642 -123392288 + AluSg SINE Alu 2 300 -10 2712 288 55 20 chrX 39207891 39208705 -123391225 + L1M4b LINE L1 1 843 -6016 820 76 51 0 chrX 39208723 39208841 -123391089 - MSTA LTR MaLR -304 124 1 551 270 44 26 chrX 39208851 39209104 -123390826 - L1MEc LINE L1 -4416 2031 1753 990 120 126 23 chrX 39209107 39209282 -123390648 + MSTA LTR MaLR 232 424 -4 2214 191 212 41 chrX 39209287 39209682 -123390248 + L1MB8 LINE L1 3650 3976 -2170 2418 92 0 3 chrX 39209682 39209988 -123389942 - AluSx SINE Alu -5 307 3 2214 191 212 41 chrX 39209988 39210341 -123389589 + L1MB8 LINE L1 3976 4526 -1620 4318 165 37 49 chrX 39210343 39211608 -123388322 + L1MB8 LINE L1 4898 6177 -1 2362 104 0 0 chrX 39211620 39211919 -123388011 + AluSx SINE Alu 1 299 -13 737 217 18 6 chrX 39212026 39212310 -123387620 - MLT1A1 LTR MaLR 0 365 1 1600 200 3 29 chrX 39212428 39212738 -123387192 - AluJo SINE Alu -10 302 1 253 169 12 24 chrX 39214158 39214241 -123385689 - L1ME4a LINE L1 -3 6118 6037 2480 90 3 0 chrX 39214500 39214812 -123385118 + AluSq SINE Alu 1 313 0 522 258 13 26 chrX 39214813 39214964 -123384966 + MER5A DNA MER1_type 40 188 -1 3310 172 22 13 chrX 39215032 39215665 -123384265 + L1MB3 LINE L1 5508 6146 -37 2305 108 0 0 chrX 39215666 39215962 -123383968 - AluSx SINE Alu -16 296 1 2046 89 18 18 chrX 39215985 39216287 -123383643 - AluSx SINE Alu 0 302 1 288 0 0 0 chrX 39216331 39216363 -123383567 + (CA)n Simple_repeat Simple_repeat 2 33 0 2117 70 13 57 chrX 39216559 39216623 -123383307 + L1PA11 LINE L1 5873 5938 -236 2226 92 3 22 chrX 39216623 39216940 -123382990 + AluSx SINE Alu 1 311 -1 2444 45 0 11 chrX 39216944 39217283 -123382647 + AluY SINE Alu 1 336 0 2117 70 13 57 chrX 39217283 39217527 -123382403 + L1PA11 LINE L1 5941 6173 -1 2236 83 27 7 chrX 39218322 39218623 -123381307 - AluY SINE Alu 0 311 5 4033 130 8 0 chrX 39218628 39219338 -123380592 - L1P LINE L1 -742 5426 4711 1005 168 0 0 chrX 39219338 39219487 -123380443 + AluJb SINE Alu 136 284 -28 2302 95 9 25 chrX 39219538 39219855 -123380075 + AluSq SINE Alu 1 312 -1 523 235 30 12 chrX 39219999 39220165 -123379765 - L1ME4a LINE L1 -2 6119 5951 24 32 0 0 chrX 39220521 39220552 -123379378 + AT_rich Low_complexity Low_complexity 1 31 0 258 33 0 0 chrX 39220709 39220739 -123379191 - LTR6A LTR ERV1 -462 102 73 399 21 0 0 chrX 39221646 39221694 -123378236 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 350 170 0 0 chrX 39221711 39221764 -123378166 + Alu SINE Alu 1 53 -249 885 146 51 0 chrX 39221788 39221925 -123378005 - AluSq/x SINE Alu -169 144 1 24 0 0 0 chrX 39221979 39222003 -123377927 + AT_rich Low_complexity Low_complexity 1 24 0 194 59 39 39 chrX 39222386 39222437 -123377493 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 3013 184 45 33 chrX 39222446 39223048 -123376882 + MLT1E2 LTR MaLR 1 609 -17 2296 100 0 3 chrX 39223162 39223462 -123376468 + AluSg SINE Alu 7 305 -5 2313 104 0 0 chrX 39223686 39223984 -123375946 - AluSx SINE Alu -14 298 1 1252 105 0 6 chrX 39224019 39224190 -123375740 + AluSg/x SINE Alu 135 304 -6 363 136 0 0 chrX 39224190 39224249 -123375681 + (TA)n Simple_repeat Simple_repeat 2 60 0 628 183 78 73 chrX 39225314 39225382 -123374548 + L1MC4 LINE L1 7290 7356 -686 2730 33 0 0 chrX 39225382 39225683 -123374247 - AluY SINE Alu -9 302 2 628 183 78 73 chrX 39225683 39225805 -123374125 + L1MC4 LINE L1 7356 7481 -561 585 231 82 0 chrX 39225810 39225944 -123373986 + FRAM SINE Alu 16 160 -16 1419 204 22 108 chrX 39225947 39226151 -123373779 + L1MC4 LINE L1 7510 7730 -312 2378 99 3 0 chrX 39226151 39226454 -123373476 + AluSp SINE Alu 1 304 -9 1419 204 22 108 chrX 39226454 39226832 -123373098 + L1MC4 LINE L1 7730 8042 0 255 220 64 155 chrX 39228103 39228367 -123371563 - L1MC4 LINE L1 -3 8039 7800 726 231 48 102 chrX 39228411 39228485 -123371445 - L1MC4 LINE L1 -140 7902 7826 2327 88 3 3 chrX 39228485 39228779 -123371151 - AluSp SINE Alu -19 294 1 726 231 48 102 chrX 39228779 39228847 -123371083 - L1MC4 LINE L1 -216 7826 7756 2322 81 10 0 chrX 39228847 39229144 -123370786 - AluSx SINE Alu -12 300 1 726 231 48 102 chrX 39229144 39229334 -123370596 - L1MC4 LINE L1 -286 7756 7587 2133 113 3 0 chrX 39229337 39229664 -123370266 - AluSx SINE Alu 0 328 1 2263 100 3 3 chrX 39229697 39229996 -123369934 - AluSq SINE Alu -14 299 1 274 233 56 11 chrX 39230134 39230224 -123369706 + MIR SINE MIR 78 171 -91 506 279 8 0 chrX 39230233 39230362 -123369568 + L1ME LINE L1 5541 5670 -451 835 87 0 2 chrX 39230365 39230608 -123369322 + AluSx SINE Alu 1 292 -18 1596 94 153 8 chrX 39230821 39231075 -123368855 + AluSx SINE Alu 2 292 -10 1048 175 0 41 chrX 39231515 39231541 -123368389 + AluJb SINE Alu 114 140 -172 1473 157 108 31 chrX 39231541 39231828 -123368102 + AluJo SINE Alu 1 309 -3 2241 97 10 3 chrX 39231828 39232126 -123367804 + AluSp SINE Alu 1 301 -12 1048 175 0 41 chrX 39232126 39232292 -123367638 + AluJb SINE Alu 138 299 -13 1974 135 35 0 chrX 39232354 39232643 -123367287 + AluSx SINE Alu 1 299 -13 2106 125 0 0 chrX 39232657 39232987 -123366943 - AluSx SINE Alu 0 312 1 878 158 0 0 chrX 39233016 39233149 -123366781 - AluSq/x SINE Alu -179 133 1 275 163 65 76 chrX 39233150 39233242 -123366688 - L1MEd LINE L1 -3795 2334 2244 2066 108 16 32 chrX 39233289 39233604 -123366326 - AluSq SINE Alu -3 310 1 254 237 0 0 chrX 39233604 39233663 -123366267 + L1M4c LINE L1 1631 1689 -4695 2489 79 0 0 chrX 39233835 39234138 -123365792 + AluSx SINE Alu 1 303 -9 2179 98 3 17 chrX 39234140 39234435 -123365495 + AluSg SINE Alu 3 293 -17 1035 200 6 0 chrX 39234490 39234670 -123365260 + MLT1A1 LTR MaLR 185 365 0 2177 121 0 0 chrX 39234684 39234973 -123364957 - AluSx SINE Alu -23 289 1 784 263 87 70 chrX 39234976 39235459 -123364471 - L1MEd LINE L1 -5595 524 6 517 265 83 28 chrX 39235468 39235649 -123364281 - MIR SINE MIR -71 191 1 314 368 78 0 chrX 39236156 39236398 -123363532 - L3 LINE CR1 -1130 447 187 2113 87 47 10 chrX 39236516 39236814 -123363116 + AluSg SINE Alu 2 310 0 514 293 58 23 chrX 39237020 39237279 -123362651 - L2 LINE L2 0 3313 3046 651 281 52 0 chrX 39237301 39237493 -123362437 + L2 LINE L2 2020 2221 -1093 1917 229 37 27 chrX 39237575 39238087 -123361843 - LTR40a LTR ERVL -1 518 2 228 67 0 0 chrX 39238139 39238169 -123361761 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2237 69 43 0 chrX 39238172 39238449 -123361481 - AluY SINE Alu -22 289 1 1638 226 91 71 chrX 39238465 39238703 -123361227 + L1MC5 LINE L1 6047 6279 -1529 1730 133 104 0 chrX 39238703 39238822 -123361108 + AluJb SINE Alu 1 106 -206 405 0 0 0 chrX 39238822 39238867 -123361063 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1730 133 104 0 chrX 39238867 39239017 -123360913 + AluJb SINE Alu 106 298 -14 1638 226 91 71 chrX 39239017 39239767 -123360163 + L1MC5 LINE L1 6279 6937 -871 1263 245 30 19 chrX 39239768 39240139 -123359791 + L2 LINE L2 2213 2587 -727 489 177 0 13 chrX 39240221 39240300 -123359630 + AluJ/FLAM SINE Alu 2 79 -233 909 259 12 16 chrX 39240517 39240772 -123359158 + LTR16A LTR ERVL 174 427 -23 2221 116 3 7 chrX 39240814 39241116 -123358814 - AluSx SINE Alu -11 301 1 261 289 70 28 chrX 39241332 39241474 -123358456 + MER89 LTR ERV1 383 530 -29 250 293 93 40 chrX 39241538 39241688 -123358242 + L2 LINE L2 3155 3312 -1 185 311 14 14 chrX 39241688 39241762 -123358168 - L2 LINE L2 -277 3036 2963 1972 110 10 20 chrX 39242397 39242725 -123357205 + AluSx SINE Alu 1 312 0 1261 97 0 0 chrX 39242725 39242914 -123357016 + AluSq SINE Alu 134 322 0 358 243 171 62 chrX 39242923 39243083 -123356847 - HAL1 LINE L1 -6 2501 2360 2228 106 3 0 chrX 39243083 39243398 -123356532 - AluSp SINE Alu 0 316 1 358 243 171 62 chrX 39243398 39243420 -123356510 - HAL1 LINE L1 -147 2360 2342 279 0 0 0 chrX 39243420 39243451 -123356479 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2058 114 0 0 chrX 39243451 39243732 -123356198 - AluSq SINE Alu -32 281 1 358 243 171 62 chrX 39243732 39243850 -123356080 - HAL1 LINE L1 -164 2343 2165 2448 90 0 0 chrX 39243901 39244212 -123355718 + AluSq SINE Alu 1 311 -2 422 247 80 56 chrX 39244228 39244390 -123355540 - HAL1 LINE L1 -1638 869 704 1954 132 3 7 chrX 39244582 39244870 -123355060 + AluSx SINE Alu 1 287 -25 27 29 0 0 chrX 39244870 39244904 -123355026 + AT_rich Low_complexity Low_complexity 1 34 0 206 275 14 14 chrX 39245503 39245572 -123354358 + L2 LINE L2 2465 2533 -781 526 286 61 21 chrX 39245584 39245864 -123354066 + L1MC4a LINE L1 3683 3973 -2173 1918 145 0 24 chrX 39245912 39246208 -123353722 + AluJo SINE Alu 13 301 -11 5188 134 21 37 chrX 39246279 39246694 -123353236 + L1PA16 LINE L1 4631 5051 -1115 2366 97 3 0 chrX 39246694 39246994 -123352936 + AluSp SINE Alu 1 301 -12 5188 134 21 37 chrX 39246994 39248007 -123351923 + L1PA16 LINE L1 5051 6034 -132 2346 117 0 0 chrX 39248007 39248315 -123351615 + AluSq SINE Alu 1 308 -5 5188 134 21 37 chrX 39248315 39248437 -123351493 + L1PA16 LINE L1 6034 6156 -10 1878 118 0 0 chrX 39248488 39248743 -123351187 + AluSq SINE Alu 42 296 -17 829 141 0 0 chrX 39248810 39248938 -123350992 + L1MB3 LINE L1 6045 6172 -11 306 0 0 0 chrX 39248938 39248972 -123350958 + (TG)n Simple_repeat Simple_repeat 1 34 0 510 289 35 59 chrX 39248993 39249405 -123350525 + L1MC4a LINE L1 4029 4411 -1735 2149 106 3 14 chrX 39249405 39249697 -123350233 - AluSx SINE Alu -23 289 1 510 289 35 59 chrX 39249697 39249963 -123349967 + L1MC4a LINE L1 4411 4682 -1464 255 139 0 0 chrX 39249967 39250003 -123349927 + Alu SINE Alu 3 38 -264 40 49 0 0 chrX 39250073 39250134 -123349796 + AT_rich Low_complexity Low_complexity 1 61 0 1945 89 0 4 chrX 39250361 39250608 -123349322 - AluSx SINE Alu -20 292 47 1947 235 105 37 chrX 39250615 39250938 -123348992 + L1MC4a LINE L1 5005 4919 -1227 1951 100 47 27 chrX 39250938 39251239 -123348691 - AluSx SINE Alu -5 307 1 1947 235 105 37 chrX 39251239 39251757 -123348173 + L1MC4a LINE L1 4918 5399 -747 1226 143 19 46 chrX 39251818 39252034 -123347896 - AluSg/x SINE Alu -12 298 89 1185 51 0 0 chrX 39252040 39252177 -123347753 - AluSq/x SINE Alu -175 137 1 1670 157 33 16 chrX 39252374 39252679 -123347251 - 7SLRNA srpRNA srpRNA -6 314 5 2141 101 25 0 chrX 39252914 39253214 -123346716 - AluSx SINE Alu 0 307 1 2426 83 3 6 chrX 39253230 39253542 -123346388 - AluSq SINE Alu -2 311 1 703 101 0 0 chrX 39253674 39253773 -123346157 - AluSx SINE Alu -10 300 202 2558 116 95 48 chrX 39253774 39254234 -123345696 + LTR21A LTR ERV1 3 487 -18 1684 96 0 0 chrX 39254234 39254442 -123345488 - AluSx SINE Alu -103 209 2 2558 116 95 48 chrX 39254442 39254456 -123345474 + LTR21A LTR ERV1 487 499 -6 1185 94 28 6 chrX 39254721 39254902 -123345028 - LTR54 LTR ERV1 0 510 326 824 106 16 16 chrX 39254942 39255065 -123344865 - LTR54 LTR ERV1 -387 123 1 2415 66 3 13 chrX 39255199 39255501 -123344429 - AluSp SINE Alu -14 299 1 192 267 0 0 chrX 39255813 39255873 -123344057 + CT-rich Low_complexity Low_complexity 1 60 0 307 323 11 7 chrX 39255976 39256064 -123343866 + MIR SINE MIR 60 120 -88 2597 50 0 0 chrX 39256064 39256365 -123343565 + AluY SINE Alu 1 301 -10 307 323 11 7 chrX 39256365 39256394 -123343536 + MIR SINE MIR 120 147 -61 373 167 56 0 chrX 39256525 39256597 -123343333 - L1ME2 LINE L1 -228 5936 5861 1496 149 28 93 chrX 39256788 39256903 -123343027 - L1ME2 LINE L1 -363 5801 5680 2450 70 0 7 chrX 39256903 39257204 -123342726 + AluSc SINE Alu 1 299 -10 1496 149 28 93 chrX 39257204 39257301 -123342629 - L1ME2 LINE L1 -484 5680 5615 2187 64 4 25 chrX 39257301 39257581 -123342349 - AluSq SINE Alu -39 274 1 1496 149 28 93 chrX 39257581 39257690 -123342240 - L1ME2 LINE L1 -549 5615 5500 815 155 42 0 chrX 39257747 39257889 -123342041 - AluSx SINE Alu -1 311 164 238 213 0 0 chrX 39257890 39257937 -123341993 + LTR30 LTR ERV1 1 47 -675 936 131 11 165 chrX 39257937 39258204 -123341726 + LTR12 LTR ERV1 48 273 -441 330 239 46 18 chrX 39258208 39258317 -123341613 + LTR30 LTR ERV1 544 655 -67 575 163 0 0 chrX 39258317 39258409 -123341521 + LTR12 LTR ERV1 490 581 -133 1201 79 0 55 chrX 39258409 39258574 -123341356 - AluSx SINE Alu -146 166 11 2126 122 23 0 chrX 39258637 39258941 -123340989 + AluSq SINE Alu 1 311 -2 1227 145 0 0 chrX 39259084 39259263 -123340667 - AluJ SINE Alu -15 297 119 2029 128 17 7 chrX 39259296 39259593 -123340337 - AluSx SINE Alu -12 300 1 841 92 0 92 chrX 39259597 39259728 -123340202 - AluJ SINE Alu -188 124 6 2235 111 0 7 chrX 39260086 39260393 -123339537 - AluSx SINE Alu -2 310 6 1651 169 36 13 chrX 39260549 39260850 -123339080 + AluJo SINE Alu 1 308 -4 2631 32 7 10 chrX 39260945 39261253 -123338677 + AluY SINE Alu 1 307 -4 246 149 35 0 chrX 39261536 39261623 -123338307 + (TA)n Simple_repeat Simple_repeat 1 90 0 2163 123 0 0 chrX 39261624 39261916 -123338014 - AluSq SINE Alu -20 293 2 2299 97 0 0 chrX 39262156 39262445 -123337485 + AluSc SINE Alu 3 291 -18 27 73 0 0 chrX 39262445 39262500 -123337430 + AT_rich Low_complexity Low_complexity 1 55 0 2532 76 0 0 chrX 39262675 39262979 -123336951 - AluSg SINE Alu -6 304 1 1869 93 0 4 chrX 39263674 39263910 -123336020 + AluSp SINE Alu 62 296 -17 180 111 0 0 chrX 39263953 39263980 -123335950 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 252 288 75 0 chrX 39263981 39264061 -123335869 - L2 LINE L2 -25 3288 3203 2181 131 0 3 chrX 39264243 39264556 -123335374 - AluSx SINE Alu 0 312 1 1031 239 88 54 chrX 39264607 39264632 -123335298 + Charlie8 DNA MER1_type 86 109 -2308 261 0 0 0 chrX 39264632 39264661 -123335269 + (CA)n Simple_repeat Simple_repeat 1 29 0 1031 239 88 54 chrX 39264661 39264987 -123334943 + Charlie8 DNA MER1_type 109 449 -1968 2327 109 3 0 chrX 39265036 39265340 -123334590 - AluSx SINE Alu -7 305 1 185 267 13 27 chrX 39265355 39265430 -123334500 - L2 LINE L2 -264 3008 2935 853 137 0 8 chrX 39265717 39265848 -123334082 - AluSg/x SINE Alu -96 214 85 249 273 68 25 chrX 39266026 39266187 -123333743 + L1MC4a LINE L1 6064 6231 -1577 1001 227 22 4 chrX 39266268 39266493 -123333437 + L1M4 LINE L1 16 244 -6298 * 1238 201 7 37 chrX 39266491 39266790 -123333140 + L1M4 LINE L1 3151 3440 -3204 2175 108 57 0 chrX 39266795 39267091 -123332839 + AluSp SINE Alu 1 313 0 1676 153 34 30 chrX 39267136 39267431 -123332499 - AluSx SINE Alu -16 296 1 1807 154 14 10 chrX 39267467 39267760 -123332170 - AluJb SINE Alu -18 294 1 1115 250 32 40 chrX 39267793 39267864 -123332066 + L1MC4 LINE L1 6696 6766 -1276 1761 88 9 0 chrX 39267864 39268090 -123331840 + AluSg/x SINE Alu 72 299 -13 1115 250 32 40 chrX 39268090 39268143 -123331787 + L1MC4 LINE L1 6766 6818 -1224 2296 80 10 3 chrX 39268143 39268444 -123331486 + AluSc SINE Alu 1 303 -6 1115 250 32 40 chrX 39268444 39268690 -123331240 + L1MC4 LINE L1 6818 7064 -978 2352 102 0 0 chrX 39268760 39269064 -123330866 + AluSx SINE Alu 4 307 -5 1644 136 4 0 chrX 39269149 39269399 -123330531 + L1PA16 LINE L1 5907 6157 -9 29 0 0 25 chrX 39269547 39269567 -123330363 + AT_rich Low_complexity Low_complexity 1 20 -19 2295 73 0 27 chrX 39269567 39269868 -123330062 + AluY SINE Alu 1 293 -18 29 0 0 25 chrX 39269868 39269887 -123330043 + AT_rich Low_complexity Low_complexity 20 39 0 2579 57 0 3 chrX 39269891 39270191 -123329739 + AluSp SINE Alu 1 299 -14 2099 124 0 3 chrX 39270284 39270605 -123329325 + AluSx SINE Alu 3 322 0 1803 201 111 65 chrX 39270625 39270876 -123329054 + MLT1E3 LTR MaLR 1 239 -385 2308 97 0 0 chrX 39270876 39271165 -123328765 + AluSx SINE Alu 1 289 -23 1803 201 111 65 chrX 39271165 39271510 -123328420 + MLT1E3 LTR MaLR 239 624 0 320 306 0 0 chrX 39271514 39271599 -123328331 + L1MC5 LINE L1 7034 7118 -843 261 136 114 0 chrX 39271604 39271648 -123328282 - MER41E LTR ERV1 -147 365 317 21 0 0 0 chrX 39271707 39271728 -123328202 + AT_rich Low_complexity Low_complexity 1 21 0 652 163 42 202 chrX 39271728 39272089 -123327841 + L1MC5 LINE L1 7127 7429 -532 258 237 76 23 chrX 39272105 39272236 -123327694 + L1MC5 LINE L1 7508 7645 -316 2038 92 4 0 chrX 39272243 39272504 -123327426 - AluSx SINE Alu -15 297 36 2179 112 13 16 chrX 39272504 39272816 -123327114 + AluSx SINE Alu 2 312 0 499 274 25 0 chrX 39272816 39272973 -123326957 + L1MC5 LINE L1 7701 7861 -100 753 206 7 0 chrX 39273058 39273194 -123326736 - MER4C LTR ERV1 0 465 329 423 107 0 0 chrX 39273194 39273289 -123326641 - Alu SINE Alu 0 321 227 2182 105 3 46 chrX 39273291 39273615 -123326315 - AluSq SINE Alu -3 310 1 248 102 20 0 chrX 39273678 39273727 -123326203 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 2548 76 0 0 chrX 39273928 39274232 -123325698 - AluSq SINE Alu -9 304 1 180 0 0 0 chrX 39274360 39274380 -123325550 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2283 80 0 17 chrX 39274542 39274841 -123325089 + AluSc SINE Alu 16 309 0 1001 149 82 16 chrX 39274848 39275042 -123324888 + L1MB2 LINE L1 5959 6165 -6 765 288 107 6 chrX 39275103 39275559 -123324371 + L1ME3A LINE L1 5317 5951 -219 * 2153 128 53 60 chrX 39275553 39275952 -123323978 + L1MB2 LINE L1 5721 6118 -53 1530 127 60 0 chrX 39275952 39276199 -123323731 + L1MA5A LINE L1 6028 6294 -3 2153 128 53 60 chrX 39276199 39276214 -123323716 + L1MB2 LINE L1 6118 6132 -39 2122 140 0 0 chrX 39276407 39276714 -123323216 - AluSx SINE Alu -5 307 1 659 34 34 0 chrX 39276714 39276802 -123323128 + (TTTTC)n Simple_repeat Simple_repeat 2 92 0 1630 151 3 72 chrX 39276802 39277106 -123322824 - AluJb SINE Alu -29 283 1 2360 93 0 34 chrX 39277177 39277320 -123322610 + AluSx SINE Alu 1 147 -165 2193 109 14 0 chrX 39277320 39277614 -123322316 + AluSx SINE Alu 1 298 -14 2360 93 0 34 chrX 39277614 39277793 -123322137 + AluSx SINE Alu 147 312 0 2344 78 0 0 chrX 39277937 39278248 -123321682 - AluSp SINE Alu 0 311 1 2356 105 0 9 chrX 39278253 39278568 -123321362 - AluSx SINE Alu 0 312 1 1864 163 0 3 chrX 39278591 39278891 -123321039 - AluJo SINE Alu -13 299 1 24 32 0 0 chrX 39278891 39278922 -123321008 + AT_rich Low_complexity Low_complexity 1 31 0 2256 78 3 40 chrX 39278923 39279244 -123320686 + AluY SINE Alu 1 309 -2 504 191 34 27 chrX 39279260 39279407 -123320523 + L1M4 LINE L1 4298 4445 -1701 505 328 48 38 chrX 39279567 39279860 -123320070 - L2 LINE L2 -1930 1384 1089 352 293 5 66 chrX 39279891 39280089 -123319841 - L2 LINE L2 -2737 577 392 1408 142 0 43 chrX 39280089 39280202 -123319728 + AluJo SINE Alu 11 110 -202 2373 81 0 26 chrX 39280202 39280511 -123319419 - AluSg SINE Alu -9 301 1 1408 142 0 43 chrX 39280511 39280630 -123319300 + AluJo SINE Alu 110 233 -79 2352 88 0 0 chrX 39280866 39281173 -123318757 + AluSc SINE Alu 1 307 -2 729 175 0 132 chrX 39281227 39281416 -123318514 - FRAM SINE Alu -12 164 1 789 176 53 74 chrX 39281417 39281484 -123318446 + L1ME3A LINE L1 5700 5767 -403 474 108 0 0 chrX 39281484 39281558 -123318372 + (TA)n Simple_repeat Simple_repeat 2 75 0 2608 64 0 0 chrX 39281562 39281873 -123318057 - AluY SINE Alu 0 311 1 789 176 53 74 chrX 39281873 39282002 -123317928 + L1ME3A LINE L1 5770 5900 -270 2363 82 3 0 chrX 39282002 39282294 -123317636 + AluSg SINE Alu 1 293 -17 789 176 53 74 chrX 39282294 39282325 -123317605 + L1ME3A LINE L1 5900 5930 -240 1009 219 57 0 chrX 39282325 39282535 -123317395 + MER58A DNA MER1_type 2 223 -1 429 240 10 0 chrX 39282562 39282662 -123317268 - L1ME2 LINE L1 -9 6155 6055 384 136 0 0 chrX 39282670 39282729 -123317201 + L1ME3A LINE L1 5920 5978 -192 2194 46 4 39 chrX 39282835 39283115 -123316815 - AluY SINE Alu -14 297 28 2014 114 3 23 chrX 39283164 39283463 -123316467 + AluJb SINE Alu 1 293 -19 2337 88 0 7 chrX 39283588 39283896 -123316034 + AluY SINE Alu 5 310 -1 1277 151 13 53 chrX 39283979 39284204 -123315726 + MER20 DNA MER1_type 3 218 -1 1526 87 0 5 chrX 39284324 39284519 -123315411 + AluSg/x SINE Alu 115 308 -2 549 188 45 0 chrX 39284556 39284668 -123315262 + MER3 DNA MER1_type 50 166 -43 1085 151 0 0 chrX 39284691 39284843 -123315087 - AluJb SINE Alu -27 285 134 2045 138 0 7 chrX 39284843 39285147 -123314783 - AluJo SINE Alu -9 303 2 247 119 191 0 chrX 39285149 39285191 -123314739 + MER3 DNA MER1_type 159 208 -1 230 219 0 0 chrX 39285162 39285203 -123314727 - MER3 DNA MER1_type -132 77 37 * 507 235 12 54 chrX 39285248 39285353 -123314577 + MIR SINE MIR 74 171 -91 2207 101 24 0 chrX 39285353 39285640 -123314290 + AluSx SINE Alu 1 294 -18 507 235 12 54 chrX 39285640 39285700 -123314230 + MIR SINE MIR 171 232 -30 2338 74 3 23 chrX 39285896 39286221 -123313709 - AluSp SINE Alu 0 313 1 2148 129 0 7 chrX 39286284 39286586 -123313344 + AluSx SINE Alu 1 300 -12 249 189 22 56 chrX 39286626 39286716 -123313214 - L1MC5 LINE L1 -33 7928 7842 332 147 105 53 chrX 39286749 39286844 -123313086 - L1MC5 LINE L1 -30 7931 7832 193 29 29 29 chrX 39286972 39287007 -123312923 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1448 122 5 32 chrX 39287011 39287232 -123312698 - AluJo SINE Alu -16 296 82 405 271 98 25 chrX 39287234 39287470 -123312460 - L1M4 LINE L1 -2268 3878 3626 21 0 0 0 chrX 39287470 39287491 -123312439 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chrX 39287506 39287529 -123312401 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3053 25 6 0 chrX 39287532 39287888 -123312042 - L1PA4 LINE L1 -3 6152 5795 534 46 0 0 chrX 39287888 39287953 -123311977 + L1PA4 LINE L1 5744 5808 -347 2185 111 3 0 chrX 39288064 39288352 -123311578 - AluSp SINE Alu -24 289 1 2333 102 0 0 chrX 39288790 39289083 -123310847 - AluSg SINE Alu -17 293 1 2184 103 0 0 chrX 39289262 39289569 -123310361 - AluSg SINE Alu 0 307 1 1782 174 24 10 chrX 39289587 39289881 -123310049 + AluJb SINE Alu 1 298 -14 334 237 153 23 chrX 39289894 39290025 -123309905 - HAL1 LINE L1 -828 1679 1532 2185 108 0 3 chrX 39290151 39290461 -123309469 - AluSx SINE Alu 0 309 1 2382 100 3 3 chrX 39290565 39290874 -123309056 - AluSg SINE Alu -1 309 1 2217 101 27 0 chrX 39290931 39291228 -123308702 - AluSx SINE Alu -7 305 1 858 150 0 0 chrX 39291246 39291373 -123308557 - FLAM_C SINE Alu -16 127 1 1316 71 12 0 chrX 39291499 39291668 -123308262 - AluSx SINE Alu -16 294 124 1919 165 3 7 chrX 39291668 39291977 -123307953 - AluJb SINE Alu -4 308 1 22 80 0 0 chrX 39291986 39292036 -123307894 + AT_rich Low_complexity Low_complexity 1 50 0 290 235 0 12 chrX 39292075 39292160 -123307770 - L1ME4a LINE L1 -77 6044 5961 3428 94 29 12 chrX 39292268 39292780 -123307150 - L1MA5A LINE L1 -4 6293 5773 2211 91 7 26 chrX 39293512 39293821 -123306109 - AluSq SINE Alu -8 305 3 1183 73 0 0 chrX 39293822 39293958 -123305972 - AluSx SINE Alu -176 136 1 265 256 11 44 chrX 39294273 39294363 -123305567 + L2 LINE L2 3174 3260 -12 2271 117 0 0 chrX 39294617 39294924 -123305006 - AluSg SINE Alu -2 308 2 978 109 8 0 chrX 39295613 39295741 -123304189 - FLAM_C SINE Alu -10 133 5 206 242 0 15 chrX 39295944 39296010 -123303920 + MIR SINE MIR 156 220 -42 1901 145 0 0 chrX 39296221 39296490 -123303440 + AluJo SINE Alu 1 269 -43 1008 223 161 56 chrX 39296555 39297003 -123302927 - MLT1G LTR MaLR -7 583 89 2260 129 6 0 chrX 39297017 39297343 -123302587 - MER51B LTR ERV1 0 377 50 386 121 277 12 chrX 39297359 39297442 -123302488 - MER51A LTR ERV1 -529 105 1 743 158 8 0 chrX 39297504 39297624 -123302306 - MLT1G LTR MaLR -472 123 3 2371 108 0 0 chrX 39297724 39298031 -123301899 - AluSq SINE Alu -6 307 1 2248 101 3 19 chrX 39298152 39298459 -123301471 - AluSg SINE Alu -8 302 1 2254 105 3 0 chrX 39298499 39298793 -123301137 + AluSq SINE Alu 3 297 -16 554 174 101 22 chrX 39298834 39298972 -123300958 + MER3 DNA MER1_type 25 126 -83 1987 149 45 0 chrX 39298989 39299364 -123300566 + MER3 DNA MER1_type 2233 2624 0 342 200 108 83 chrX 39299722 39299802 -123300128 - MIR3 SINE MIR -21 187 102 2403 94 0 0 chrX 39299802 39300100 -123299830 + AluSg SINE Alu 1 298 -12 342 200 108 83 chrX 39300100 39300139 -123299791 - MIR3 SINE MIR -106 102 65 2199 113 0 0 chrX 39300352 39300643 -123299287 - AluSx SINE Alu 0 312 22 1344 169 9 17 chrX 39301061 39301375 -123298555 - MLT1A1 LTR MaLR 0 365 1 2726 101 3 11 chrX 39301448 39301826 -123298104 + THE1C LTR MaLR 1 375 0 10322 100 42 39 chrX 39301826 39303401 -123296529 + THE1C-int LTR MaLR 1 1580 0 2066 127 3 22 chrX 39303401 39303717 -123296213 + THE1C LTR MaLR 1 310 -65 2271 105 7 0 chrX 39303717 39304042 -123295888 - AluSg SINE Alu 0 310 1 1048 128 29 0 chrX 39304042 39304214 -123295716 + L1MB4 LINE L1 6004 6180 0 2147 116 10 3 chrX 39304246 39304549 -123295381 + AluSx SINE Alu 1 305 -7 1047 209 45 11 chrX 39304935 39305203 -123294727 + L1MC5 LINE L1 7637 7913 -48 2162 121 0 0 chrX 39305274 39305564 -123294366 + AluSx SINE Alu 1 290 -22 369 329 61 32 chrX 39305620 39305897 -123294033 + L1MC4a LINE L1 5100 5384 -762 1114 196 104 57 chrX 39305931 39306013 -123293917 - MER2 DNA MER2_type -10 335 258 1614 97 0 31 chrX 39306013 39306240 -123293690 + AluY SINE Alu 92 311 0 1114 196 104 57 chrX 39306240 39306474 -123293456 - MER2 DNA MER2_type -87 258 4 2177 99 0 24 chrX 39306494 39306824 -123293106 + AluSx SINE Alu 1 323 0 947 281 73 47 chrX 39306848 39306913 -123293017 + L1MC4a LINE L1 5404 5466 -2342 2002 92 6 74 chrX 39306913 39307239 -123292691 + AluSx SINE Alu 1 304 -8 947 281 73 47 chrX 39307239 39307668 -123292262 + L1MC4a LINE L1 5466 5911 -1897 276 100 0 0 chrX 39308182 39308222 -123291708 + (TG)n Simple_repeat Simple_repeat 1 40 0 1817 119 0 0 chrX 39308358 39308601 -123291329 - AluSx SINE Alu -69 243 1 36 0 0 0 chrX 39308641 39308677 -123291253 + AT_rich Low_complexity Low_complexity 1 36 0 2180 107 4 0 chrX 39308682 39309000 -123290930 + AluSq SINE Alu 4 322 0 1899 126 4 0 chrX 39309089 39309351 -123290579 + AluJb SINE Alu 1 263 -49 180 0 0 0 chrX 39309360 39309380 -123290550 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 994 276 89 20 chrX 39309517 39309909 -123290021 - MLT1L LTR MaLR -22 593 175 268 330 39 35 chrX 39309982 39310185 -123289745 + L2 LINE L2 2326 2529 -785 956 252 96 37 chrX 39310302 39310790 -123289140 - L1ME4a LINE L1 -4 6117 5601 249 242 15 0 chrX 39310847 39310913 -123289017 - L1MC4 LINE L1 -49 7993 7927 699 278 125 34 chrX 39311087 39311304 -123288626 - L1ME3A LINE L1 -208 5962 5766 2144 93 6 47 chrX 39311304 39311626 -123288304 - AluSg SINE Alu -1 309 1 699 278 125 34 chrX 39311626 39311825 -123288105 - L1ME3A LINE L1 -404 5766 5508 1867 118 30 43 chrX 39311947 39312251 -123287679 - AluSx SINE Alu -12 300 1 239 216 24 104 chrX 39312323 39312379 -123287551 - L1ME4a LINE L1 0 6121 6079 2390 94 7 0 chrX 39312379 39312688 -123287242 + AluSp SINE Alu 1 311 -2 239 216 24 104 chrX 39312688 39312756 -123287174 - L1ME4a LINE L1 -42 6079 6007 * 566 161 55 9 chrX 39312755 39312883 -123287047 + L1MA7 LINE L1 6145 6265 -26 2057 73 26 15 chrX 39312890 39313163 -123286767 - AluSq SINE Alu -8 305 30 1003 149 9 113 chrX 39313171 39313334 -123286596 - AluJo SINE Alu -23 289 111 225 0 0 0 chrX 39313334 39313359 -123286571 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2249 85 0 0 chrX 39313360 39313642 -123286288 - AluSp SINE Alu -31 282 1 1003 149 9 113 chrX 39313642 39313698 -123286232 - AluJo SINE Alu -200 112 91 222 271 45 90 chrX 39314588 39314743 -123285187 + L2 LINE L2 2596 2743 -571 1117 82 0 0 chrX 39314751 39314885 -123285045 + AluSg1 SINE Alu 2 135 -174 2268 79 4 0 chrX 39314885 39315164 -123284766 + AluY SINE Alu 1 320 0 328 25 0 0 chrX 39315164 39315204 -123284726 + (CAAAA)n Simple_repeat Simple_repeat 1 140 0 208 325 99 42 chrX 39315253 39315444 -123284486 + L2 LINE L2 2815 3016 -256 2143 120 0 3 chrX 39315515 39315806 -123284124 + AluSx SINE Alu 1 290 -22 5877 180 23 89 chrX 39315821 39316284 -123283646 + L1MC4 LINE L1 3779 4271 -3771 1109 83 0 0 chrX 39316284 39316416 -123283514 + AluSq/x SINE Alu 1 132 -180 2061 117 32 0 chrX 39316416 39316698 -123283232 + AluSx SINE Alu 6 296 -16 5877 180 23 89 chrX 39316698 39316906 -123283024 + L1MC4 LINE L1 4270 4490 -3552 2319 98 0 3 chrX 39316906 39317212 -123282718 + AluSg SINE Alu 1 305 -5 5877 180 23 89 chrX 39317212 39318302 -123281628 + L1MC4 LINE L1 4490 7384 -658 1876 85 101 0 chrX 39318302 39318602 -123281328 + AluSx SINE Alu 1 326 0 1215 114 6 0 chrX 39318602 39318778 -123281152 + AluSq SINE Alu 134 310 -3 4527 107 16 15 chrX 39318783 39319218 -123280712 + L1PB3 LINE L1 5477 5915 -239 2268 88 0 56 chrX 39319218 39319538 -123280392 - AluSx SINE Alu -10 302 1 4527 107 16 15 chrX 39319538 39319778 -123280152 + L1PB3 LINE L1 5915 6153 -1 1960 232 39 76 chrX 39319782 39319958 -123279972 + L1MC4 LINE L1 7372 7553 -489 2603 58 0 3 chrX 39319958 39320267 -123279663 - AluY SINE Alu -3 308 1 1960 232 39 76 chrX 39320267 39320787 -123279143 + L1MC4 LINE L1 7553 8042 0 192 77 0 0 chrX 39321471 39321497 -123278433 + (A)n Simple_repeat Simple_repeat 1 26 0 2446 87 0 3 chrX 39321693 39322005 -123277925 + AluSp SINE Alu 1 311 -2 1718 126 84 0 chrX 39322547 39322809 -123277121 + AluSx SINE Alu 1 284 -28 230 181 340 21 chrX 39325181 39325275 -123274655 + MIR SINE MIR 108 231 -31 1171 99 0 12 chrX 39325468 39325630 -123274300 + AluSc SINE Alu 137 296 -13 203 229 0 0 chrX 39325927 39325962 -123273968 + polypurine Low_complexity Low_complexity 2 36 0 210 71 0 0 chrX 39326265 39326293 -123273637 + (TG)n Simple_repeat Simple_repeat 2 29 0 1246 194 172 58 chrX 39326296 39326498 -123273432 - L1ME1 LINE L1 -3 6163 5985 2363 83 0 3 chrX 39326498 39326800 -123273130 - AluSg SINE Alu -9 301 1 1246 194 172 58 chrX 39326800 39326973 -123272957 - L1ME1 LINE L1 -181 5985 5735 2055 153 30 89 chrX 39326973 39327136 -123272794 - MLT1C LTR MaLR -1 466 295 2544 76 0 0 chrX 39327136 39327439 -123272491 - AluSx SINE Alu -9 303 1 2055 153 30 89 chrX 39327439 39327770 -123272160 - MLT1C LTR MaLR -172 295 1 1246 194 172 58 chrX 39327770 39327806 -123272124 - L1ME1 LINE L1 -431 5735 5704 308 275 108 0 chrX 39327888 39328008 -123271922 - MIR SINE MIR 0 262 130 2300 97 0 0 chrX 39328116 39328414 -123271516 - AluSp SINE Alu -15 298 1 2498 28 0 3 chrX 39328478 39328785 -123271145 - AluY SINE Alu 0 306 1 2138 78 3 21 chrX 39328792 39329031 -123270899 - AluSx SINE Alu 0 372 130 180 0 0 0 chrX 39329031 39329051 -123270879 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2095 97 0 38 chrX 39329051 39329341 -123270589 - AluSg SINE Alu -31 279 1 2138 78 3 21 chrX 39329341 39329442 -123270488 - AluSx SINE Alu -240 132 36 193 0 61 30 chrX 39329526 39329559 -123270371 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2221 89 4 0 chrX 39329561 39329842 -123270088 - AluSp SINE Alu -31 282 1 244 244 76 42 chrX 39330227 39330346 -123269584 - L1MC4 LINE L1 -426 7616 7494 * 405 269 0 0 chrX 39330319 39330427 -123269503 - L1MC5 LINE L1 -543 7418 7311 2015 134 10 3 chrX 39330435 39330727 -123269203 - AluSx SINE Alu -18 294 1 852 218 118 3 chrX 39330727 39331000 -123268930 - L1MC4 LINE L1 -552 7490 7181 362 284 16 8 chrX 39331380 39331507 -123268423 - LTR33A LTR ERVL 0 523 396 2237 103 0 35 chrX 39331715 39332027 -123267903 - AluSx SINE Alu -11 301 1 2368 94 0 3 chrX 39332815 39333112 -123266818 - AluSp SINE Alu -17 296 1 21 0 0 0 chrX 39333121 39333142 -123266788 + AT_rich Low_complexity Low_complexity 1 21 0 439 101 0 0 chrX 39333355 39333424 -123266506 - Alu SINE Alu -1 310 242 1732 255 45 47 chrX 39333434 39333708 -123266222 - L1MC4 LINE L1 -1875 5933 5660 2141 110 3 3 chrX 39333708 39333999 -123265931 + AluSg SINE Alu 1 291 -19 1732 255 45 47 chrX 39333999 39334363 -123265567 - L1MC4 LINE L1 -2148 5660 5296 767 129 0 8 chrX 39334637 39334761 -123265169 - AluJb SINE Alu -188 124 2 2215 110 0 0 chrX 39334773 39335065 -123264865 - AluSg SINE Alu -18 292 1 2259 94 0 0 chrX 39335112 39335399 -123264531 + AluSg SINE Alu 1 287 -23 21 0 0 0 chrX 39335647 39335668 -123264262 + AT_rich Low_complexity Low_complexity 1 21 0 1828 98 0 4 chrX 39335697 39335933 -123263997 - AluSq SINE Alu -78 235 1 2207 160 70 8 chrX 39335988 39336375 -123263555 + MLT2C2 LTR ERVL 1 411 -53 2393 79 3 3 chrX 39336377 39336682 -123263248 - AluSp SINE Alu -8 305 1 2188 88 0 18 chrX 39337019 39337304 -123262626 + AluSx SINE Alu 1 280 -32 317 0 0 65 chrX 39337311 39337357 -123262573 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 2254 105 3 0 chrX 39337536 39337831 -123262099 + AluSq SINE Alu 1 296 -17 2594 53 3 0 chrX 39337834 39338136 -123261794 + AluY SINE Alu 1 303 -8 1147 102 7 0 chrX 39338195 39338342 -123261588 - AluSq/x SINE Alu -164 148 1 2281 97 0 13 chrX 39338525 39338835 -123261095 - AluSc SINE Alu -3 306 1 1497 173 103 0 chrX 39338891 39339162 -123260768 - AluJb SINE Alu -13 299 1 2264 82 3 0 chrX 39339171 39339475 -123260455 - AluSp SINE Alu 0 305 1 238 225 154 50 chrX 39339475 39339657 -123260273 - HAL1b LINE L1 -671 677 477 247 244 65 113 chrX 39339801 39339878 -123260052 - HAL1b LINE L1 -1053 295 216 2237 110 0 13 chrX 39339878 39340187 -123259743 + AluSg SINE Alu 1 305 -5 247 244 65 113 chrX 39340187 39340339 -123259591 - HAL1b LINE L1 -1132 216 77 789 210 34 23 chrX 39340944 39341120 -123258810 - MER45A DNA AcHobo 0 178 1 10977 172 55 41 chrX 39341697 39342059 -123257871 - Cheshire DNA MER1_type -1 2419 2064 2072 103 33 17 chrX 39342059 39342359 -123257571 + AluSx SINE Alu 1 305 -7 10977 172 55 41 chrX 39342359 39343399 -123256531 - Cheshire DNA MER1_type -356 2064 1040 2347 100 0 0 chrX 39343399 39343700 -123256230 - AluSg1 SINE Alu -8 301 1 10977 172 55 41 chrX 39343700 39343992 -123255938 - Cheshire DNA MER1_type -1380 1040 754 2399 88 0 3 chrX 39343992 39344298 -123255632 - AluSc SINE Alu -4 305 1 10977 172 55 41 chrX 39344298 39344584 -123255346 - Cheshire DNA MER1_type -1666 754 474 2092 107 0 7 chrX 39344584 39344894 -123255036 - AluSc SINE Alu 0 308 1 10977 172 55 41 chrX 39344894 39345231 -123254699 - Cheshire DNA MER1_type -1946 474 1 1866 79 26 140 chrX 39345635 39345977 -123253953 - AluSq SINE Alu 0 303 1 1103 149 15 109 chrX 39346153 39346350 -123253580 - L1MDa LINE L1 -4941 1599 1444 2260 115 7 0 chrX 39346350 39346655 -123253275 - AluSx SINE Alu -5 307 1 1103 149 15 109 chrX 39346655 39346786 -123253144 - L1MDa LINE L1 -5096 1444 1302 2009 126 3 11 chrX 39347354 39347663 -123252267 - AluSx SINE Alu 0 307 1 1928 224 90 59 chrX 39347664 39347808 -123252122 - L1MDa LINE L1 -5368 1172 1034 2217 114 7 10 chrX 39347808 39348115 -123251815 - AluSx SINE Alu -6 306 1 1928 224 90 59 chrX 39348115 39348595 -123251335 - L1MDa LINE L1 -5506 1034 529 23 0 0 0 chrX 39349080 39349103 -123250827 + AT_rich Low_complexity Low_complexity 1 23 0 2190 120 0 7 chrX 39349228 39349528 -123250402 - AluSx SINE Alu -14 298 1 415 318 78 12 chrX 39349763 39349960 -123249970 - MIR SINE MIR -52 210 3 271 228 69 13 chrX 39350200 39350285 -123249645 - MIR SINE MIR -88 120 30 2159 41 94 0 chrX 39350370 39350636 -123249294 - AluY SINE Alu -20 291 1 2017 92 44 20 chrX 39350639 39350933 -123248997 - AluSg SINE Alu -9 301 1 291 54 0 0 chrX 39351037 39351074 -123248856 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chrX 39351424 39351445 -123248485 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 39352389 39352418 -123247512 + GC_rich Low_complexity Low_complexity 1 29 0 225 139 0 0 chrX 39352975 39353018 -123246912 + (CCG)n Simple_repeat Simple_repeat 3 45 0 180 111 0 0 chrX 39353191 39353218 -123246712 + (CCG)n Simple_repeat Simple_repeat 3 29 0 30 27 0 0 chrX 39353644 39353681 -123246249 + GC_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrX 39355205 39355234 -123244696 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 39356040 39356069 -123243861 + AT_rich Low_complexity Low_complexity 1 29 0 234 322 0 0 chrX 39356495 39356585 -123243345 + L1MC4 LINE L1 6614 6703 -1339 281 307 0 0 chrX 39356592 39356680 -123243250 - L1MC4 LINE L1 -1340 6702 6615 261 233 47 23 chrX 39356641 39356727 -123243203 + L1MC4 LINE L1 6614 6701 -1341 * 1465 119 78 0 chrX 39357698 39357917 -123242013 - MER46A DNA MER2_type 0 236 1 1966 139 7 7 chrX 39358336 39358638 -123241292 - AluSx SINE Alu -10 302 1 2484 87 0 0 chrX 39359507 39359807 -123240123 + AluSx SINE Alu 1 300 -12 2243 109 0 3 chrX 39360125 39360428 -123239502 + AluSx SINE Alu 1 302 -10 2324 80 10 7 chrX 39360769 39361071 -123238859 + AluSg SINE Alu 1 303 -7 2111 132 0 0 chrX 39361300 39361604 -123238326 - AluSq SINE Alu -9 304 1 446 216 216 26 chrX 39361864 39362058 -123237872 - L1MC5 LINE L1 -103 7858 7628 182 272 184 0 chrX 39362387 39362490 -123237440 - L2 LINE L2 -15 3257 3136 1761 147 3 30 chrX 39362682 39362981 -123236949 - AluJb SINE Alu -15 297 7 2209 113 0 3 chrX 39362997 39363290 -123236640 - AluSx SINE Alu -20 292 1 2471 78 3 10 chrX 39363436 39363745 -123236185 + AluSp SINE Alu 3 309 -4 448 292 57 26 chrX 39364034 39364226 -123235704 + MIR SINE MIR 49 246 -16 350 297 226 19 chrX 39364457 39364647 -123235283 + L2 LINE L2 2283 2432 -882 1486 190 37 7 chrX 39364647 39364942 -123234988 - AluJb SINE Alu -8 304 1 350 297 226 19 chrX 39364942 39365017 -123234913 + L2 LINE L2 2432 2603 -711 458 115 0 0 chrX 39365121 39365182 -123234748 + U6 snRNA snRNA 1 61 -46 21 0 0 0 chrX 39365182 39365203 -123234727 + AT_rich Low_complexity Low_complexity 1 21 0 2194 93 7 10 chrX 39365205 39365496 -123234434 + AluSg SINE Alu 1 290 -20 2081 110 28 0 chrX 39365682 39365964 -123233966 - AluSg SINE Alu -20 290 1 2380 87 0 3 chrX 39366108 39366407 -123233523 - AluSx SINE Alu -14 298 1 1687 149 64 7 chrX 39366554 39366836 -123233094 - AluSx SINE Alu -14 298 1 1021 193 63 42 chrX 39367400 39367639 -123232291 + AluJo SINE Alu 64 307 -5 2263 88 0 3 chrX 39367641 39367937 -123231993 + AluSg1 SINE Alu 1 295 -14 198 0 0 0 chrX 39368630 39368652 -123231278 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1954 143 4 0 chrX 39368652 39368931 -123230999 - AluSx SINE Alu -32 280 1 24 0 0 0 chrX 39369077 39369101 -123230829 + AT_rich Low_complexity Low_complexity 1 24 0 4176 172 74 19 chrX 39369470 39370259 -123229671 - L1MD1 LINE L1 -12 6624 5745 2253 86 36 0 chrX 39370259 39370560 -123229370 - AluSq SINE Alu -1 312 1 4176 172 74 19 chrX 39370560 39370909 -123229021 - L1MD1 LINE L1 -891 5745 5417 884 249 12 8 chrX 39370918 39371163 -123228767 - L1MD1 LINE L1 -1163 5377 5132 4426 51 7 10 chrX 39371165 39371750 -123228180 - LTR10C LTR ERV1 0 591 9 810 248 113 54 chrX 39371750 39371893 -123228037 - L1MD1 LINE L1 -1406 5134 5001 1894 131 13 29 chrX 39371893 39372023 -123227907 + AluSx SINE Alu 1 132 -180 2362 74 0 13 chrX 39372023 39372335 -123227595 + AluY SINE Alu 1 308 -3 2321 99 3 0 chrX 39372340 39372642 -123227288 + AluSx SINE Alu 3 305 -7 1894 131 13 29 chrX 39372642 39372819 -123227111 + AluSx SINE Alu 136 309 -3 810 248 113 54 chrX 39372819 39373118 -123226812 - L1MD1 LINE L1 -1539 5001 4666 1742 91 0 0 chrX 39373126 39373347 -123226583 - AluY SINE Alu -12 299 79 1437 200 76 125 chrX 39373376 39374217 -123225713 - L1MD1 LINE L1 -2120 4420 3621 198 0 0 0 chrX 39374218 39374240 -123225690 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1136 89 19 0 chrX 39374240 39374397 -123225533 - AluSg/x SINE Alu -18 294 135 2043 92 53 0 chrX 39374398 39374682 -123225248 - AluSq SINE Alu -13 300 2 423 0 0 0 chrX 39374691 39374738 -123225192 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2098 78 0 48 chrX 39374740 39375035 -123224895 - AluY SINE Alu -30 281 1 683 208 84 45 chrX 39375044 39375424 -123224506 - L1MD1 LINE L1 -2931 3609 3215 3615 184 83 70 chrX 39375440 39375692 -123224238 - L1MD1 LINE L1 -4062 2478 2231 2351 66 0 13 chrX 39375692 39375993 -123223937 - AluY SINE Alu -14 297 1 3615 184 83 70 chrX 39375993 39377188 -123222742 - L1MD1 LINE L1 -4309 2231 1013 1423 215 13 30 chrX 39377190 39377488 -123222442 - AluJo SINE Alu -19 293 1 507 303 124 113 chrX 39377946 39378621 -123221309 - L1MD1 LINE L1 -5602 938 393 312 48 0 0 chrX 39378621 39378663 -123221267 + (TG)n Simple_repeat Simple_repeat 2 43 0 507 303 124 113 chrX 39378663 39378743 -123221187 - L1MD1 LINE L1 -6147 393 315 444 37 0 0 chrX 39378827 39378881 -123221049 + (TG)n Simple_repeat Simple_repeat 2 55 0 931 274 15 38 chrX 39379042 39379433 -123220497 - L1MD1 LINE L1 -6142 398 17 1995 104 57 0 chrX 39380233 39380512 -123219418 + AluSg SINE Alu 1 295 -15 1692 188 69 112 chrX 39380559 39380715 -123219215 - L1M4 LINE L1 -3242 3402 3241 1871 98 98 4 chrX 39380715 39380979 -123218951 + AluSx SINE Alu 1 289 -23 1692 188 69 112 chrX 39380979 39381561 -123218369 - L1M4 LINE L1 -3403 3241 2747 2204 108 3 10 chrX 39381561 39381858 -123218072 + AluSx SINE Alu 1 295 -17 1692 188 69 112 chrX 39381858 39382002 -123217928 - L1M4 LINE L1 -3897 2747 2598 2342 86 7 0 chrX 39382013 39382304 -123217626 - AluSx SINE Alu -19 293 1 1471 224 42 20 chrX 39382333 39382690 -123217240 - MLT1A1 LTR MaLR 0 365 1 4310 223 110 49 chrX 39382698 39384633 -123215297 - L1M4 LINE L1 -4571 2075 2 315 321 104 64 chrX 39384654 39384848 -123215082 - L1MC4a LINE L1 -1211 6597 6412 1558 149 133 3 chrX 39384848 39385156 -123214774 + MER7A DNA MER2_type 1 346 0 315 321 104 64 chrX 39385156 39385335 -123214595 - L1MC4a LINE L1 -1396 6412 6209 1663 182 14 10 chrX 39385769 39386066 -123213864 - AluJb SINE Alu -14 298 1 26 74 0 0 chrX 39386181 39386235 -123213695 + AT_rich Low_complexity Low_complexity 1 54 0 198 103 0 0 chrX 39386267 39386296 -123213634 + (TG)n Simple_repeat Simple_repeat 2 30 0 210 37 0 0 chrX 39386300 39386327 -123213603 + (GA)n Simple_repeat Simple_repeat 2 28 0 580 131 50 0 chrX 39386328 39386427 -123213503 - AluSq/x SINE Alu -202 111 8 249 244 204 18 chrX 39386521 39386742 -123213188 - HAL1 LINE L1 -123 2384 2123 240 154 0 0 chrX 39386852 39386891 -123213039 - HAL1 LINE L1 -550 1957 1919 1194 118 0 0 chrX 39386891 39387061 -123212869 - AluSq SINE Alu -11 302 133 216 0 0 0 chrX 39387061 39387085 -123212845 + (TG)n Simple_repeat Simple_repeat 1 24 0 1663 115 130 7 chrX 39387086 39387363 -123212567 - AluSx SINE Alu 0 310 1 237 118 118 0 chrX 39387431 39387482 -123212448 - HAL1 LINE L1 -651 1856 1800 1366 222 187 16 chrX 39387885 39388414 -123211516 - MLT1G LTR MaLR 0 590 13 982 257 41 55 chrX 39388558 39388974 -123210956 - L1ME3A LINE L1 -11 6159 5750 1740 112 4 12 chrX 39389812 39390062 -123209868 - AluSq SINE Alu -23 290 43 10060 45 6 126 chrX 39390119 39391688 -123208242 - SVA Other Other -5 1381 1 2166 111 7 7 chrX 39391697 39392004 -123207926 - AluSp SINE Alu -6 307 1 281 279 15 0 chrX 39392560 39392628 -123207302 + MIR SINE MIR 86 154 -108 1762 137 32 35 chrX 39392628 39392914 -123207016 + Tigger2a DNA MER2_type 1 287 -2421 2306 82 0 16 chrX 39392914 39393218 -123206712 - AluSq SINE Alu -14 299 1 1762 137 32 35 chrX 39393218 39393275 -123206655 + Tigger2a DNA MER2_type 287 343 -91 212 302 0 0 chrX 39393344 39393397 -123206533 + (TA)n Simple_repeat Simple_repeat 1 53 0 1093 246 72 36 chrX 39393417 39393793 -123206137 + LTR10C LTR ERV1 188 590 -43 468 183 0 21 chrX 39393811 39393904 -123206026 + Tigger2a DNA MER2_type 340 430 -4 322 207 92 23 chrX 39393907 39393994 -123205936 + MIR SINE MIR 155 247 -15 217 213 0 43 chrX 39394236 39394283 -123205647 + MIR SINE MIR 58 102 -160 2376 170 64 28 chrX 39395143 39395829 -123204101 + Tigger7 DNA MER2_type 11 2587 0 222 118 0 0 chrX 39396002 39396036 -123203894 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 1883 154 6 28 chrX 39396245 39396564 -123203366 - AluJo SINE Alu 0 312 1 2119 106 7 10 chrX 39396641 39396942 -123202988 - AluSx SINE Alu -12 300 1 412 259 0 69 chrX 39397266 39397397 -123202533 - MIR SINE MIR -94 168 47 26 30 0 0 chrX 39397775 39397808 -123202122 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 39398176 39398199 -123201731 + AT_rich Low_complexity Low_complexity 1 23 0 1956 151 109 2 chrX 39398661 39399093 -123200837 - L1MC3 LINE L1 -1 7784 7307 363 169 45 11 chrX 39399095 39399184 -123200746 - L1MC3 LINE L1 -655 7130 7039 1395 238 193 19 chrX 39399185 39399257 -123200673 - L1MEc LINE L1 -3152 3063 3005 1904 93 116 8 chrX 39399257 39399525 -123200405 - AluSg SINE Alu -13 297 1 1395 238 193 19 chrX 39399525 39400042 -123199888 - L1MEc LINE L1 -3210 3005 2331 2462 71 7 0 chrX 39400042 39400351 -123199579 - AluY SINE Alu 0 311 1 1395 238 193 19 chrX 39400351 39400461 -123199469 - L1MEc LINE L1 -3884 2331 2241 2345 99 3 13 chrX 39400479 39400792 -123199138 - AluSg SINE Alu 0 310 1 2022 208 54 88 chrX 39400802 39401650 -123198280 - L1MD2 LINE L1 0 6242 5367 1835 110 21 45 chrX 39401650 39401940 -123197990 - AluSx SINE Alu 0 312 30 2022 208 54 88 chrX 39401940 39402085 -123197845 - L1MD2 LINE L1 -875 5367 5316 2289 100 0 0 chrX 39402085 39402384 -123197546 - AluSx SINE Alu -13 299 1 2022 208 54 88 chrX 39402384 39402444 -123197486 - L1MD2 LINE L1 -926 5316 5255 833 273 53 47 chrX 39402506 39403150 -123196780 - L1MEc LINE L1 -4663 1733 1086 1232 115 0 0 chrX 39403154 39403319 -123196611 - AluSg/x SINE Alu -6 306 142 189 0 0 0 chrX 39403332 39403353 -123196577 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1966 130 0 7 chrX 39403353 39403638 -123196292 - AluSx SINE Alu -29 283 1 1657 246 108 66 chrX 39403638 39404264 -123195666 - L1MEc LINE L1 -5302 1094 495 378 0 0 0 chrX 39404264 39404306 -123195624 + (TG)n Simple_repeat Simple_repeat 2 43 0 1698 196 17 0 chrX 39404313 39404604 -123195326 - AluJo SINE Alu -16 296 1 1657 246 108 66 chrX 39404604 39404625 -123195305 - L1MEc LINE L1 -5906 490 471 525 138 85 23 chrX 39404625 39404755 -123195175 - L1MA3 LINE L1 0 6305 6168 1657 246 108 66 chrX 39404755 39405112 -123194818 - L1MEc LINE L1 -5925 471 39 204 40 0 0 chrX 39405673 39405698 -123194232 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1833 154 0 20 chrX 39405700 39405992 -123193938 - AluSx SINE Alu -26 286 1 485 244 64 26 chrX 39406522 39406678 -123193252 + MIR SINE MIR 100 261 -1 247 250 53 13 chrX 39406786 39406862 -123193068 - HAL1 LINE L1 -8 2499 2421 561 147 0 11 chrX 39406864 39406959 -123192971 + MER2 DNA MER2_type 245 338 -7 489 310 84 46 chrX 39407008 39407401 -123192529 + L1M4 LINE L1 484 891 -5651 420 247 132 17 chrX 39407462 39407636 -123192294 + L1M4 LINE L1 899 1092 -5454 565 260 59 12 chrX 39407640 39407894 -123192036 + L1MC4 LINE L1 7584 7849 -193 371 157 98 10 chrX 39407937 39408039 -123191891 + L1MC4 LINE L1 7932 8042 0 2047 88 0 4 chrX 39408558 39408818 -123191112 - AluSc SINE Alu -23 286 28 2691 178 65 43 chrX 39408946 39409447 -123190483 - L1ME1 LINE L1 -181 5985 5447 964 110 39 0 chrX 39409447 39409601 -123190329 - L1PA12 LINE L1 0 6168 6009 2691 178 65 43 chrX 39409601 39409956 -123189974 - L1ME1 LINE L1 -719 5447 5101 2512 166 21 56 chrX 39410626 39410688 -123189242 + L1MB2 LINE L1 5621 5684 -487 1936 86 43 47 chrX 39410688 39410989 -123188941 - AluSx SINE Alu -12 300 1 2512 166 21 56 chrX 39410989 39411493 -123188437 + L1MB2 LINE L1 5684 6167 -4 2148 117 0 49 chrX 39411700 39412026 -123187904 - AluSx SINE Alu -2 310 1 180 299 42 69 chrX 39412105 39412249 -123187681 + L2 LINE L2 1944 2083 -1231 264 155 41 124 chrX 39412439 39412492 -123187438 - HAL1 LINE L1 -112 2395 2352 2391 87 7 0 chrX 39412492 39412801 -123187129 - AluSq SINE Alu -2 311 1 264 155 41 124 chrX 39412801 39412844 -123187086 - HAL1 LINE L1 -155 2352 2307 2294 87 0 22 chrX 39412876 39413188 -123186742 - AluSg SINE Alu -5 305 1 2090 139 0 0 chrX 39413192 39413493 -123186437 - AluSx SINE Alu -11 301 1 352 217 179 9 chrX 39413924 39414136 -123185794 - HAL1 LINE L1 -876 1631 1384 313 156 0 47 chrX 39415068 39415132 -123184798 - Charlie1 DNA MER1_type -774 1987 1927 513 273 143 13 chrX 39415135 39415289 -123184641 - MIR SINE MIR -63 199 26 657 203 107 38 chrX 39415596 39415940 -123183990 - MLT1D LTR MaLR 0 505 64 1766 125 131 3 chrX 39416205 39416525 -123183405 - MER46B DNA MER2_type 0 236 1 12961 124 34 54 chrX 39416925 39417597 -123182333 + Tigger1 DNA MER2_type 22 706 -1712 1607 162 58 11 chrX 39417597 39417875 -123182055 - AluJo SINE Alu -21 291 1 12961 124 34 54 chrX 39417875 39419648 -123180282 + Tigger1 DNA MER2_type 706 2418 0 2110 127 0 3 chrX 39419678 39419969 -123179961 - AluSx SINE Alu -22 290 1 1926 198 135 34 chrX 39419970 39420369 -123179561 - Charlie1 DNA MER1_type -678 2083 1726 2322 93 3 0 chrX 39420369 39420670 -123179260 + AluSp SINE Alu 1 302 -11 1926 198 135 34 chrX 39420670 39420961 -123178969 - Charlie1 DNA MER1_type -1035 1726 1 2335 74 10 7 chrX 39421097 39421393 -123178537 - AluY SINE Alu -13 298 2 927 223 155 76 chrX 39421614 39421654 -123178276 - L1M4 LINE L1 -1205 4941 4906 2330 78 0 7 chrX 39421654 39421948 -123177982 - AluSc SINE Alu -17 292 1 927 223 155 76 chrX 39421948 39422500 -123177430 - L1M4 LINE L1 -1240 4906 4302 616 210 65 28 chrX 39422516 39422730 -123177200 - L1MEc LINE L1 -4331 2065 1844 1094 136 14 38 chrX 39422763 39422976 -123176954 - Tigger1 DNA MER2_type -2 2416 2209 505 107 291 0 chrX 39423008 39423111 -123176819 - Tigger1 DNA MER2_type -2285 133 1 2253 192 21 10 chrX 39423157 39423642 -123176288 - L1ME1 LINE L1 -256 5910 5421 1150 209 66 68 chrX 39423640 39423685 -123176245 - L1ME1 LINE L1 -1383 4763 4719 * 2035 118 4 0 chrX 39423685 39423964 -123175966 + AluSq SINE Alu 1 280 -33 1150 209 66 68 chrX 39423964 39424435 -123175495 - L1ME1 LINE L1 -1427 4719 4248 960 230 30 8 chrX 39424446 39424711 -123175219 - L1MEc LINE L1 -4533 1863 1593 526 231 96 5 chrX 39424856 39425055 -123174875 - L1MEc LINE L1 -6144 252 36 2109 128 21 0 chrX 39425716 39426006 -123173924 - AluSx SINE Alu -16 296 1 464 270 99 12 chrX 39426040 39426362 -123173568 - L1M4 LINE L1 -855 5291 4942 321 252 195 0 chrX 39426552 39426711 -123173219 - L1M4 LINE L1 -3819 2327 2138 2280 60 49 3 chrX 39427008 39427292 -123172638 - AluY SINE Alu -14 297 1 29 28 0 0 chrX 39428669 39428705 -123171225 + AT_rich Low_complexity Low_complexity 1 36 0 1776 143 17 20 chrX 39428725 39429026 -123170904 + AluJb SINE Alu 1 300 -12 2263 74 3 17 chrX 39429637 39429935 -123169995 - AluSg SINE Alu -16 294 1 267 54 0 0 chrX 39430194 39430231 -123169699 + (TG)n Simple_repeat Simple_repeat 1 37 0 3990 54 6 12 chrX 39430369 39430885 -123169045 + LTR10D LTR ERV1 1 513 0 655 227 118 45 chrX 39431418 39431638 -123168292 + MIR SINE MIR 25 260 -2 2203 110 0 3 chrX 39431888 39432189 -123167741 - AluSq SINE Alu -13 300 1 1373 151 83 30 chrX 39432382 39432679 -123167251 - AluJo SINE Alu 0 316 6 189 74 0 0 chrX 39432683 39432710 -123167220 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 427 263 79 0 chrX 39432924 39433091 -123166839 - MLT1J LTR MaLR -290 173 15 1789 132 53 4 chrX 39433421 39433687 -123166243 + AluJb SINE Alu 17 295 -17 550 117 225 8 chrX 39435127 39435247 -123164683 - L1MB2 LINE L1 -14 6157 6012 32 43 0 0 chrX 39435409 39435455 -123164475 + AT_rich Low_complexity Low_complexity 1 46 0 379 326 169 4 chrX 39435680 39435953 -123163977 - L3 LINE CR1 -267 1310 993 229 280 0 0 chrX 39435976 39436026 -123163904 + polypyrimidine Low_complexity Low_complexity 1 50 0 1548 174 7 33 chrX 39436027 39436326 -123163604 - AluJo SINE Alu -21 291 1 228 347 33 8 chrX 39436330 39436451 -123163479 - L3 LINE CR1 -615 962 839 2284 106 0 0 chrX 39436474 39436776 -123163154 + AluSq SINE Alu 11 312 -1 862 166 57 26 chrX 39437500 39437693 -123162237 - MER3 DNA MER1_type 0 209 11 2265 93 0 3 chrX 39437798 39438098 -123161832 - AluY SINE Alu -12 299 1 225 0 0 0 chrX 39438221 39438246 -123161684 + (T)n Simple_repeat Simple_repeat 1 25 0 318 50 0 0 chrX 39438247 39438287 -123161643 - MER4E LTR ERV1 -74 692 653 231 307 23 34 chrX 39441944 39442032 -123157898 + MIR SINE MIR 60 146 -116 21 0 0 0 chrX 39442150 39442171 -123157759 + AT_rich Low_complexity Low_complexity 1 21 0 3319 136 29 7 chrX 39442216 39442796 -123157134 - Tigger1 DNA MER2_type -1 2417 1825 1658 162 51 30 chrX 39442797 39443093 -123156837 + AluJo SINE Alu 1 302 -10 8909 126 14 7 chrX 39443093 39444538 -123155392 - Tigger1 DNA MER2_type -963 1455 1 2100 131 0 10 chrX 39444761 39445067 -123154863 - AluJo SINE Alu -9 303 1 2599 43 0 3 chrX 39445494 39445794 -123154136 - AluY SINE Alu -12 299 1 883 277 106 6 chrX 39446649 39446978 -123152952 - LTR16A LTR ERVL -64 386 25 2325 100 3 0 chrX 39447313 39447614 -123152316 + AluSp SINE Alu 1 302 -11 2605 48 3 0 chrX 39448030 39448340 -123151590 - AluY SINE Alu 0 311 1 27 49 0 0 chrX 39449003 39449044 -123150886 + AT_rich Low_complexity Low_complexity 1 41 0 249 240 0 0 chrX 39449258 39449308 -123150622 - MLT1J LTR MaLR -112 399 350 306 265 130 19 chrX 39449312 39449511 -123150419 - MLT1L LTR MaLR -8 605 352 1862 103 95 129 chrX 39450187 39450690 -123149240 - LTR21A LTR ERV1 -19 486 1 2309 92 3 0 chrX 39451378 39451671 -123148259 + AluSx SINE Alu 1 294 -18 997 246 264 38 chrX 39451885 39452762 -123147168 - HAL1 LINE L1 -657 1850 775 474 125 4 63 chrX 39453996 39454094 -123145836 - L1M3c LINE L1 -5109 1032 933 375 204 0 31 chrX 39454240 39454338 -123145592 - L1MB8 LINE L1 -7 6171 6077 280 175 0 0 chrX 39454338 39454395 -123145535 + LTR28 LTR ERV1 1 57 -963 * 1531 162 65 58 chrX 39454367 39454780 -123145150 + MER61C LTR ERV1 14 429 -5 2199 162 23 36 chrX 39454850 39455049 -123144881 - L1MB8 LINE L1 -190 5994 5794 1370 167 160 17 chrX 39455049 39455349 -123144581 + MER2 DNA MER2_type 2 344 0 2199 162 23 36 chrX 39455349 39455674 -123144256 - L1MB8 LINE L1 -390 5794 5477 548 165 0 66 chrX 39455716 39455837 -123144093 - L1MB8 LINE L1 -981 5165 5053 587 236 120 82 chrX 39455858 39455930 -123144000 - L1MC/D LINE L1 -2076 5732 5664 1887 147 0 33 chrX 39455930 39456229 -123143701 - AluJo SINE Alu -23 289 1 587 236 120 82 chrX 39456229 39456580 -123143350 - L1MC/D LINE L1 -2144 5664 5293 709 344 61 33 chrX 39456600 39457243 -123142687 - L1MC/D LINE L1 -875 5271 4611 2092 209 91 12 chrX 39457323 39457917 -123142013 - L1ME1 LINE L1 -63 6103 5463 227 253 0 45 chrX 39457927 39458081 -123141849 + CT-rich Low_complexity Low_complexity 1 147 0 2054 241 134 44 chrX 39458105 39458651 -123141279 - L1ME1 LINE L1 -845 5301 4806 2287 73 7 7 chrX 39458651 39458951 -123140979 - AluSc SINE Alu -1 308 9 2054 241 134 44 chrX 39458951 39459643 -123140287 - L1ME1 LINE L1 -1340 4806 3951 3332 166 87 10 chrX 39459704 39460392 -123139538 - MER21B LTR ERV1 -20 843 103 310 183 0 28 chrX 39460392 39460463 -123139467 - MER21B LTR ERV1 -708 155 87 1978 93 7 11 chrX 39460465 39460734 -123139196 + AluSx SINE Alu 1 268 -44 307 88 281 0 chrX 39461159 39461216 -123138714 + MADE1 DNA Mariner 1 73 -7 209 372 61 39 chrX 39461805 39461985 -123137945 - MIR3 SINE MIR -9 199 16 189 0 0 0 chrX 39462073 39462094 -123137836 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 39118 42 4 1 chrX 39462094 39468212 -123131718 - L1PA4 LINE L1 -16 6139 3 480 162 30 0 chrX 39468511 39468610 -123131320 - MER58 DNA MER1_type 0 2420 2319 240 200 243 0 chrX 39468616 39468686 -123131244 - MER58 DNA MER1_type -2333 87 1 1984 112 3 37 chrX 39468921 39469254 -123130676 + AluSx SINE Alu 2 324 0 465 325 86 23 chrX 39469262 39469564 -123130366 - L1MC/D LINE L1 -1665 4481 4161 353 149 15 0 chrX 39469964 39470031 -123129899 + CT-rich Low_complexity Low_complexity 1 68 0 335 298 44 85 chrX 39470065 39470313 -123129617 - L1MC5 LINE L1 -385 7576 7339 2161 98 11 17 chrX 39470337 39470652 -123129278 - AluSq SINE Alu 0 313 1 2471 77 6 0 chrX 39470875 39471186 -123128744 - AluSp SINE Alu 0 313 1 2113 114 10 3 chrX 39471220 39471509 -123128421 - AluSc SINE Alu -18 291 1 1141 251 111 23 chrX 39471568 39472011 -123127919 + HsTC2a DNA Tc2 100 581 -163 846 156 0 0 chrX 39472044 39472172 -123127758 - FLAM_C SINE Alu -4 129 2 1917 81 0 0 chrX 39472304 39472539 -123127391 + AluSc SINE Alu 56 290 -19 268 250 73 10 chrX 39472594 39472690 -123127240 - L1MEd LINE L1 -4875 1244 1143 2484 127 37 47 chrX 39472733 39473245 -123126685 - L1MA7 LINE L1 -102 6189 5683 1590 140 71 37 chrX 39473257 39473579 -123126351 - LTR10A LTR ERV1 -61 548 216 503 171 9 0 chrX 39473683 39473788 -123126142 - L1MA7 LINE L1 -605 5686 5581 321 244 140 55 chrX 39473879 39474043 -123125887 - L1MEd LINE L1 -5903 216 39 1744 111 32 25 chrX 39474124 39474431 -123125499 - AluSx SINE Alu 0 309 1 539 226 22 115 chrX 39474566 39474714 -123125216 - MIR SINE MIR -29 233 109 1649 185 13 20 chrX 39474714 39475038 -123124892 - AluJo SINE Alu 0 322 1 539 226 22 115 chrX 39475038 39475113 -123124817 - MIR SINE MIR -153 109 29 216 262 0 0 chrX 39475099 39475141 -123124789 + MIR SINE MIR 47 88 -174 * 182 281 18 18 chrX 39475500 39475557 -123124373 - L2 LINE L2 -94 3219 3163 3385 134 89 48 chrX 39475580 39476334 -123123596 - LTR1 LTR ERV1 0 785 1 244 279 73 110 chrX 39476708 39477063 -123122867 - L2 LINE L2 -570 2744 2403 201 154 0 0 chrX 39477231 39477270 -123122660 + T-rich Low_complexity Low_complexity 2 40 0 477 151 35 12 chrX 39477578 39477663 -123122267 - Tigger7 DNA MER2_type -9 2578 2492 225 114 0 0 chrX 39477663 39477698 -123122232 - MER4E LTR ERV1 0 779 745 893 102 110 0 chrX 39477699 39477826 -123122104 + AluSq/x SINE Alu 1 141 -172 1615 166 195 46 chrX 39477843 39478320 -123121610 - LTR10A LTR ERV1 -61 548 1 11344 113 48 47 chrX 39478347 39482528 -123117402 - Harlequin LTR ERV1 -26 7759 704 8550 202 23 13 chrX 39482662 39484468 -123115462 + HERVI LTR ERV1 606 2429 -5356 219 236 55 0 chrX 39484544 39484599 -123115331 + GA-rich Low_complexity Low_complexity 6 63 0 494 234 68 85 chrX 39484735 39485030 -123114900 - LTR10A-int LTR ERV1 -6359 290 1 1649 141 89 35 chrX 39485039 39485386 -123114544 - LTR10A LTR ERV1 -61 548 183 269 182 55 0 chrX 39485433 39485488 -123114442 - LTR10A LTR ERV1 -551 58 1 1125 126 0 0 chrX 39485488 39485639 -123114291 + AluSc SINE Alu 140 290 -19 3755 99 67 35 chrX 39485639 39486297 -123113633 + HSMAR2 DNA Mariner 624 1302 0 257 258 117 80 chrX 39486323 39486486 -123113444 - L2 LINE L2 -24 3289 3121 * 373 232 104 24 chrX 39486453 39486578 -123113352 + MIR SINE MIR 5 139 -123 1715 58 0 0 chrX 39486897 39487102 -123112828 + AluY SINE Alu 107 311 0 235 291 36 64 chrX 39487308 39487418 -123112512 + L2 LINE L2 3182 3288 -25 27 0 0 0 chrX 39487475 39487502 -123112428 + AT_rich Low_complexity Low_complexity 1 27 0 3408 106 129 3 chrX 39487761 39488325 -123111605 - MER41B LTR ERV1 0 635 1 1104 269 18 0 chrX 39488367 39488650 -123111280 + LTR16C LTR ERVL 195 482 -9 952 118 92 20 chrX 39488888 39489041 -123110889 + FRAM SINE Alu 2 165 -11 26 0 0 0 chrX 39489049 39489075 -123110855 + AT_rich Low_complexity Low_complexity 1 26 0 192 305 146 0 chrX 39490368 39490450 -123109480 + MIR SINE MIR 38 131 -77 1585 167 7 14 chrX 39490455 39490780 -123109150 - AluJo SINE Alu 0 329 7 2433 73 3 7 chrX 39490896 39491199 -123108731 - AluSx SINE Alu -8 304 3 261 354 39 15 chrX 39491751 39491881 -123108049 - MIR3 SINE MIR -9 199 67 1913 143 0 40 chrX 39493789 39494111 -123105819 - AluJb SINE Alu -1 311 3 423 0 0 0 chrX 39495152 39495199 -123104731 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2256 114 0 3 chrX 39495199 39495497 -123104433 - AluSc SINE Alu -10 299 1 408 253 6 56 chrX 39497583 39497745 -123102185 - L1ME3 LINE L1 -9 6153 6000 21 0 0 0 chrX 39498479 39498500 -123101430 + AT_rich Low_complexity Low_complexity 1 21 0 387 287 32 21 chrX 39498620 39498902 -123101028 + L1M4 LINE L1 4765 5049 -1097 434 38 23 114 chrX 39499667 39499798 -123100132 - SVA Other Other -1267 119 1 2100 141 0 0 chrX 39500494 39500800 -123099130 + AluJb SINE Alu 1 306 -6 2038 133 7 3 chrX 39500981 39501275 -123098655 + AluSx SINE Alu 1 295 -17 1451 154 32 58 chrX 39501343 39501655 -123098275 + MER7A DNA MER2_type 5 306 -40 281 267 5 84 chrX 39502063 39502254 -123097676 - L1MC4a LINE L1 -1834 5974 5799 2883 154 47 21 chrX 39502557 39502793 -123097137 - L1MB3 LINE L1 -21 6162 5934 2318 109 7 0 chrX 39502793 39503096 -123096834 + AluSx SINE Alu 2 306 -6 2883 154 47 21 chrX 39503096 39503437 -123096493 - L1MB3 LINE L1 -249 5934 5570 771 318 45 14 chrX 39503447 39503954 -123095976 + L1M4 LINE L1 3639 4161 -1985 234 250 71 24 chrX 39504253 39504337 -123095593 + L1M4 LINE L1 4757 4844 -1302 309 179 42 32 chrX 39504413 39504456 -123095474 - L1MEc LINE L1 -4069 2192 2151 318 50 0 0 chrX 39504456 39504496 -123095434 + (TGG)n Simple_repeat Simple_repeat 1 40 0 309 179 42 32 chrX 39504496 39504547 -123095383 - L1MEc LINE L1 -4110 2151 2097 549 238 45 85 chrX 39504547 39505123 -123094807 - L1MEc LINE L1 -4875 1386 834 1140 150 12 0 chrX 39505161 39505334 -123094596 - AluSg/x SINE Alu -1 309 135 1908 128 10 14 chrX 39505363 39505652 -123094278 + AluSx SINE Alu 1 288 -24 314 94 0 0 chrX 39505752 39505805 -123094125 + Alu SINE Alu 248 300 0 1535 259 84 25 chrX 39505811 39506441 -123093489 - L1MEc LINE L1 -5342 728 62 263 238 0 25 chrX 39506667 39506747 -123093183 - L1M1 LINE L1 -644 5659 5582 413 267 59 12 chrX 39506978 39507184 -123092746 - L1M4 LINE L1 -1018 5128 4915 211 309 83 0 chrX 39507480 39507564 -123092366 + L2 LINE L2 3182 3272 0 2387 85 3 3 chrX 39507683 39507988 -123091942 + AluSp SINE Alu 2 306 -7 28 29 0 0 chrX 39508518 39508553 -123091377 + AT_rich Low_complexity Low_complexity 1 35 0 2251 101 0 0 chrX 39508636 39508932 -123090998 - AluSg SINE Alu -14 296 1 1588 161 33 27 chrX 39510320 39510619 -123089311 - AluJo SINE Alu -11 301 1 2269 119 0 0 chrX 39510776 39511078 -123088852 + AluSc SINE Alu 1 302 -7 280 333 36 62 chrX 39512314 39512451 -123087479 + MIR3 SINE MIR 21 153 -55 938 180 26 66 chrX 39512451 39512679 -123087251 + MER20 DNA MER1_type 1 219 0 280 333 36 62 chrX 39512679 39512733 -123087197 + MIR3 SINE MIR 153 207 -1 206 160 0 20 chrX 39512885 39512935 -123086995 + (TTTAA)n Simple_repeat Simple_repeat 1 49 0 327 259 175 56 chrX 39514139 39514282 -123085648 - MIR3 SINE MIR -2 206 47 254 370 29 17 chrX 39514761 39514934 -123084996 + L2 LINE L2 2216 2390 -924 238 266 51 38 chrX 39515839 39515918 -123084012 + L2 LINE L2 3184 3263 -50 23 78 0 0 chrX 39516045 39516096 -123083834 + AT_rich Low_complexity Low_complexity 1 51 0 2201 130 0 0 chrX 39519108 39519416 -123080514 - AluSx SINE Alu -4 308 1 518 277 113 4 chrX 39519718 39520026 -123079904 - L1MC4a LINE L1 -338 5817 5616 236 288 53 53 chrX 39522179 39522311 -123077619 - L1ME LINE L1 -420 5701 5570 1495 250 244 69 chrX 39522488 39523600 -123076330 - L2 LINE L2 0 3313 1869 793 204 129 5 chrX 39523600 39523786 -123076144 + MER58C DNA MER1_type 3 211 -4 1495 250 244 69 chrX 39523786 39524159 -123075771 - L2 LINE L2 -1444 1869 1562 2311 98 3 0 chrX 39525270 39525577 -123074353 - AluSx SINE Alu -4 308 1 27 0 0 0 chrX 39526178 39526205 -123073725 + AT_rich Low_complexity Low_complexity 1 27 0 786 182 7 14 chrX 39526209 39526357 -123073573 - AluJo SINE Alu -30 282 136 482 169 34 0 chrX 39526374 39526492 -123073438 + CT-rich Low_complexity Low_complexity 1 122 0 835 155 0 0 chrX 39526492 39526621 -123073309 - AluJo SINE Alu -173 129 1 24 0 0 0 chrX 39529165 39529189 -123070741 + AT_rich Low_complexity Low_complexity 1 24 0 210 37 0 0 chrX 39529357 39529384 -123070546 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2127 102 10 19 chrX 39529387 39529700 -123070230 - AluSp SINE Alu -3 310 1 21 0 0 0 chrX 39529818 39529839 -123070091 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chrX 39530455 39530492 -123069438 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chrX 39530492 39530517 -123069413 + (TA)n Simple_repeat Simple_repeat 2 26 0 6861 54 2 2 chrX 39530517 39531895 -123068035 - L1PA6 LINE L1 -19 6135 4759 21 82 0 0 chrX 39533097 39533146 -123066784 + AT_rich Low_complexity Low_complexity 1 49 0 2321 108 20 3 chrX 39535405 39535756 -123064174 - L1MB2 LINE L1 -17 6154 5798 279 164 0 0 chrX 39536208 39536269 -123063661 + T-rich Low_complexity Low_complexity 1 61 0 495 48 0 0 chrX 39537117 39537179 -123062751 + (TATG)n Simple_repeat Simple_repeat 4 65 0 2223 88 0 7 chrX 39537182 39537466 -123062464 - AluSx SINE Alu -26 286 5 671 167 6 8 chrX 39537588 39537762 -123062168 - MER20 DNA MER1_type 0 219 1 2295 97 3 0 chrX 39538556 39538856 -123061074 - AluSp SINE Alu -12 301 1 2296 90 3 3 chrX 39539393 39539703 -123060227 - AluY SINE Alu -1 310 1 1782 144 21 7 chrX 39539781 39540065 -123059865 + AluJb SINE Alu 1 288 -24 21 0 0 31 chrX 39540567 39540583 -123059347 + AT_rich Low_complexity Low_complexity 1 16 -15 791 129 0 38 chrX 39540583 39540715 -123059215 - FLAM_C SINE Alu -6 127 1 21 0 0 31 chrX 39540715 39540730 -123059200 + AT_rich Low_complexity Low_complexity 16 31 0 21 0 0 0 chrX 39540790 39540811 -123059119 + AT_rich Low_complexity Low_complexity 1 21 0 332 299 23 0 chrX 39541776 39541863 -123058067 + MIR SINE MIR 56 144 -64 320 267 62 51 chrX 39542201 39542243 -123057687 - MER5B DNA MER1_type 0 178 138 1289 162 151 19 chrX 39542243 39542508 -123057422 - AluJo SINE Alu 0 302 3 320 267 62 51 chrX 39542508 39542641 -123057289 - MER5B DNA MER1_type -40 138 1 286 218 0 0 chrX 39542908 39542963 -123056967 + Tigger5 DNA MER2_type 1 55 -2268 566 112 0 22 chrX 39542973 39543062 -123056868 + Tigger5 DNA MER2_type 2237 2323 0 534 240 135 31 chrX 39543065 39543257 -123056673 - MIR SINE MIR -49 213 2 326 336 36 15 chrX 39545471 39545608 -123054322 - MIR3 SINE MIR -9 199 60 404 247 2 2 chrX 39545608 39545722 -123054208 - L1ME2 LINE L1 -6 6160 6046 314 286 130 13 chrX 39548506 39548660 -123051270 - MLT1L LTR MaLR 0 615 444 295 327 75 0 chrX 39548780 39548887 -123051043 - MLT1L LTR MaLR -359 256 142 224 340 109 41 chrX 39549229 39549376 -123050554 + MIR SINE MIR 31 187 -75 6471 73 14 8 chrX 39549409 39550520 -123049410 - L1PB1 LINE L1 -3 6148 5029 2243 115 0 0 chrX 39550926 39551221 -123048709 - AluSx SINE Alu -17 295 1 2179 89 10 20 chrX 39552304 39552608 -123047322 + AluSq SINE Alu 1 301 -12 592 143 0 62 chrX 39552778 39552890 -123047040 + AluSq/x SINE Alu 1 105 -207 686 176 0 0 chrX 39552952 39553060 -123046870 + AluSq/x SINE Alu 1 108 -205 313 75 15 60 chrX 39553060 39553127 -123046803 + (CA)n Simple_repeat Simple_repeat 2 65 0 2206 79 3 63 chrX 39553555 39553871 -123046059 - AluSq SINE Alu -16 297 1 1982 118 7 0 chrX 39554911 39555191 -123044739 + AluSq SINE Alu 1 282 -31 1127 134 12 0 chrX 39555212 39555383 -123044547 + AluSg/x SINE Alu 123 295 -15 244 221 103 0 chrX 39555583 39555651 -123044279 - MER5C DNA MER1_type -27 297 223 30 27 0 0 chrX 39556437 39556474 -123043456 + AT_rich Low_complexity Low_complexity 1 37 0 1767 151 54 0 chrX 39556474 39556753 -123043177 - AluSx SINE Alu -18 294 1 202 143 24 0 chrX 39558281 39558323 -123041607 + T-rich Low_complexity Low_complexity 2 44 0 1252 100 6 0 chrX 39558349 39558509 -123041421 - AluSq SINE Alu -152 161 1 1922 147 17 0 chrX 39559311 39559611 -123040319 - AluSx SINE Alu -7 305 1 2377 69 0 0 chrX 39561444 39561754 -123038176 - AluY SINE Alu 0 313 4 695 188 0 7 chrX 39561865 39562003 -123037927 - FRAM SINE Alu -1 175 39 25 0 0 0 chrX 39562981 39563006 -123036924 + AT_rich Low_complexity Low_complexity 1 25 0 2185 118 0 3 chrX 39563698 39563995 -123035935 + AluSx SINE Alu 1 296 -16 1415 39 0 22 chrX 39564355 39564537 -123035393 + L1PA8 LINE L1 5991 6168 -4 201 333 0 0 chrX 39564838 39564889 -123035041 - MER5B DNA MER1_type -2 176 126 328 298 112 12 chrX 39565068 39565229 -123034701 - L1MCa LINE L1 -4751 1675 1499 6198 60 13 34 chrX 39565270 39566126 -123033804 - SVA Other Other 0 1386 549 217 180 40 0 chrX 39566447 39566497 -123033433 + GA-rich Low_complexity Low_complexity 4 55 0 266 307 124 22 chrX 39566856 39567081 -123032849 + MARNA DNA Mariner 173 420 -166 214 305 0 0 chrX 39567204 39567263 -123032667 - MIR SINE MIR -62 146 88 43 20 0 0 chrX 39568104 39568154 -123031776 + AT_rich Low_complexity Low_complexity 1 50 0 18854 181 24 11 chrX 39768340 39773712 -122826218 - L1 LINE L1 -2073 5492 41 1099 174 26 17 chrX 39773717 39773947 -122825983 + MSTB1 LTR MaLR 201 432 0 831 285 75 8 chrX 39774012 39774388 -122825542 - L1MC4 LINE L1 -372 7670 7270 324 313 133 33 chrX 39774806 39775017 -122824913 + MIR SINE MIR 26 257 -5 490 256 112 11 chrX 39775353 39775567 -122824363 + MIR SINE MIR 26 262 0 310 298 28 21 chrX 39776078 39776219 -122823711 + L1ME4a LINE L1 5954 6095 -26 526 232 28 66 chrX 39776490 39776671 -122823259 + MER96 DNA MER1_type 2 175 0 2004 121 170 16 chrX 39776848 39777219 -122822711 + MSTA LTR MaLR 1 428 0 2239 126 0 0 chrX 39777781 39778083 -122821847 - AluSq SINE Alu -11 302 1 656 179 150 8 chrX 39778155 39778608 -122821322 + MLT1E1 LTR MaLR 1 590 -64 1618 213 35 32 chrX 39778626 39779045 -122820885 + MLT1C LTR MaLR 6 428 -39 2107 149 58 31 chrX 39779045 39779462 -122820468 - MSTA LTR MaLR 0 428 1 1618 213 35 32 chrX 39779462 39779503 -122820427 + MLT1C LTR MaLR 428 467 0 499 236 61 0 chrX 39779534 39779682 -122820248 + MLT1J2 LTR MaLR 9 165 -285 2755 195 12 48 chrX 39779687 39779952 -122819978 + L1MA7 LINE L1 4567 4840 -1306 1875 168 119 13 chrX 39779952 39780339 -122819591 + MSTA LTR MaLR 1 428 0 9385 129 22 36 chrX 39780341 39781941 -122817989 + MSTA-int LTR MaLR 3 1580 0 1977 147 128 8 chrX 39781941 39782323 -122817607 + MSTA LTR MaLR 1 428 0 2755 195 12 48 chrX 39782323 39782788 -122817142 + L1MA7 LINE L1 4839 5275 -871 20879 162 16 15 chrX 39782788 39790476 -122809454 + L1MA3 LINE L1 22 7721 -3 1832 157 31 8 chrX 39790511 39791357 -122808573 + L1MA7 LINE L1 5282 6289 -2 498 274 40 8 chrX 39791435 39791612 -122808318 + MLT1J2 LTR MaLR 238 418 -32 5760 98 39 2 chrX 39791938 39792830 -122807100 - L1MA4A LINE L1 -27 6276 5352 2182 179 47 2 chrX 39794341 39794398 -122805532 - L1MA4A LINE L1 -781 5365 5312 408 20 0 0 chrX 39794398 39794447 -122805483 + (TG)n Simple_repeat Simple_repeat 2 50 0 2182 179 47 2 chrX 39794447 39794876 -122805054 - L1MA4A LINE L1 -834 5312 4857 687 190 0 0 chrX 39795198 39795314 -122804616 + FLAM_A SINE Alu 20 135 -7 208 234 0 16 chrX 39795558 39795622 -122804308 + (CAAA)n Simple_repeat Simple_repeat 1 63 0 199 293 73 65 chrX 39795810 39795908 -122804022 - MER5A DNA MER1_type -28 161 60 767 205 94 0 chrX 39795908 39796079 -122803851 + MER5A DNA MER1_type 1 187 -2 199 293 73 65 chrX 39796079 39796103 -122803827 - MER5A DNA MER1_type -129 60 38 266 250 0 0 chrX 39797194 39797250 -122802680 - Zaphod DNA AcHobo 0 4031 3976 232 211 19 0 chrX 39797268 39797320 -122802610 - MER115 DNA AcHobo -253 440 388 627 339 28 0 chrX 39797393 39797611 -122802319 - MER115 DNA AcHobo -417 276 53 465 299 0 6 chrX 39798068 39798232 -122801698 - MER103 DNA DNA 0 166 4 361 295 23 54 chrX 39799192 39799321 -122800609 + LTR16C LTR ERVL 85 209 -282 504 149 30 45 chrX 39799377 39799511 -122800419 - L1MA7 LINE L1 -3 6288 6157 13673 188 40 19 chrX 39799511 39802583 -122797347 - L1MA7 LINE L1 -240 7470 4464 4228 120 9 14 chrX 39802583 39803239 -122796691 - L1PA15 LINE L1 -1 6164 5512 13673 188 40 19 chrX 39803239 39803546 -122796384 - L1MA7 LINE L1 -3246 4464 4165 2004 127 3 10 chrX 39803546 39803837 -122796093 - AluSq SINE Alu -22 291 3 13673 188 40 19 chrX 39803837 39804994 -122794936 - L1MA7 LINE L1 -3545 4165 2816 627 106 8 98 chrX 39804998 39805121 -122794809 - MSTB LTR MaLR -2 426 315 * 872 144 14 7 chrX 39805119 39805265 -122794665 - MSTB LTR MaLR -279 147 1 9475 164 11 11 chrX 39805265 39806916 -122793014 - MSTB-int LTR MaLR 0 1651 1 2443 165 16 12 chrX 39806916 39807340 -122792590 - MSTB LTR MaLR 0 426 1 881 229 13 20 chrX 39807340 39807743 -122792187 - L1M2 LINE L1 -4424 1927 1526 * 2353 183 8 6 chrX 39807741 39808259 -122791671 - L1 LINE L1 -1409 4737 4219 * 3507 227 37 41 chrX 39808258 39809214 -122790716 - L1M2 LINE L1 -4742 1539 588 2825 251 47 1 chrX 39809312 39810012 -122789918 - L1M2 LINE L1 -5541 740 9 1891 69 0 9 chrX 39810099 39810330 -122789600 + AluY SINE Alu 1 229 -82 289 66 33 33 chrX 39810331 39810392 -122789538 + (CAAAAA)n Simple_repeat Simple_repeat 2 62 0 2257 121 3 0 chrX 39810668 39810966 -122788964 - AluSx SINE Alu -12 300 2 1043 267 74 56 chrX 39811252 39811550 -122788380 + MLT1E LTR MaLR 1 351 -242 1422 203 25 7 chrX 39811550 39811852 -122788078 + AluJo SINE Alu 1 307 0 1043 267 74 56 chrX 39811852 39812041 -122787889 + MLT1E LTR MaLR 351 535 -58 31 0 0 0 chrX 39812435 39812466 -122787464 + AT_rich Low_complexity Low_complexity 1 31 0 374 278 113 0 chrX 39812973 39813106 -122786824 + Charlie7 DNA MER1_type 35 182 -2430 2373 119 57 28 chrX 39813132 39813569 -122786361 - LTR7 LTR ERV1 0 450 1 1885 126 47 9 chrX 39813571 39813889 -122786041 + MER4D LTR ERV1 5 334 -569 5853 105 6 1 chrX 39814239 39814593 -122785337 - L1PA11 LINE L1 0 6174 5823 186 43 0 0 chrX 39814593 39814616 -122785314 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5853 105 6 1 chrX 39814616 39815139 -122784791 - L1PA11 LINE L1 -351 5823 5293 25 31 0 0 chrX 39815139 39815171 -122784759 + AT_rich Low_complexity Low_complexity 1 32 0 305 185 0 0 chrX 39815442 39815507 -122784423 - L1PA11 LINE L1 0 6174 6110 743 103 29 22 chrX 39815514 39815650 -122784280 - L1P LINE L1 -784 5362 5226 2331 150 0 0 chrX 39815650 39816049 -122783881 + L1P LINE L1 4834 5232 -914 6153 227 53 6 chrX 39817263 39819331 -122780599 + L1PA12 LINE L1 2777 5013 -2571 1792 98 0 45 chrX 39819331 39819577 -122780353 + AluSc SINE Alu 1 235 -74 742 134 16 0 chrX 39819577 39819704 -122780226 + L1PA15 LINE L1 6032 6160 -5 721 246 19 0 chrX 39819712 39819923 -122780007 - L1MEc LINE L1 -3599 2530 2316 23 78 0 0 chrX 39819943 39819994 -122779936 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chrX 39820047 39820083 -122779847 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chrX 39820185 39820209 -122779721 + AT_rich Low_complexity Low_complexity 1 24 0 463 256 33 0 chrX 39820238 39820359 -122779571 + MER103 DNA DNA 26 150 -16 2544 52 3 3 chrX 39821306 39821616 -122778314 + AluY SINE Alu 1 310 -1 519 252 42 0 chrX 39822089 39822208 -122777722 + MER5C DNA MER1_type 1 124 -200 354 156 10 73 chrX 39822236 39822332 -122777598 + MER5C DNA MER1_type 233 322 -2 1520 156 8 0 chrX 39822380 39822624 -122777306 + L1PB3 LINE L1 5908 6153 -1 273 208 8 64 chrX 39823068 39823193 -122776737 - L1MEc LINE L1 -4913 1397 1280 405 317 19 29 chrX 39823325 39823533 -122776397 - L1MEc LINE L1 -5206 1104 899 1030 159 18 12 chrX 39823559 39823729 -122776201 - AluJo SINE Alu -22 290 120 6699 124 14 27 chrX 39823731 39825431 -122774499 - L1MA1 LINE L1 -7 7714 6037 9768 164 14 1 chrX 39825490 39828335 -122771595 - L1MA1 LINE L1 -1916 5649 2768 239 354 10 56 chrX 39828423 39828618 -122771312 - L1MEc LINE L1 -5372 747 562 443 191 20 34 chrX 39828634 39828781 -122771149 - L1MA7 LINE L1 -7 6284 6140 699 128 23 76 chrX 39828828 39829000 -122770930 - L1M1 LINE L1 -4280 3285 3123 3109 195 43 8 chrX 39829043 39830586 -122769344 - L1PA8 LINE L1 -14 6158 4505 15529 182 34 7 chrX 39830588 39833599 -122766331 - L1M1 LINE L1 -4453 3112 20 225 0 0 0 chrX 39833879 39833904 -122766026 + (TG)n Simple_repeat Simple_repeat 2 26 0 279 222 0 0 chrX 39833937 39834000 -122765930 - MLT1I LTR MaLR -39 370 308 5651 116 14 10 chrX 39834016 39834029 -122765901 + L1PA16 LINE L1 4949 4960 -1206 2323 102 64 3 chrX 39834029 39834372 -122765558 + THE1B LTR MaLR 1 364 0 5651 116 14 10 chrX 39834372 39835568 -122764362 + L1PA16 LINE L1 4960 6163 -3 309 295 33 25 chrX 39835735 39835857 -122764073 - MLT1I LTR MaLR -285 124 2 680 306 121 3 chrX 39835858 39836221 -122763709 - L1MEc LINE L1 -5594 525 120 411 21 0 0 chrX 39836336 39836384 -122763546 + (CA)n Simple_repeat Simple_repeat 1 48 0 1530 222 0 13 chrX 39836504 39836819 -122763111 + MER74B LTR ERVL 62 372 -250 1984 72 25 4 chrX 39836832 39837108 -122762822 + L1PB1 LINE L1 5869 6150 -1 696 352 88 30 chrX 39837664 39838439 -122761491 - L2 LINE L2 -672 2642 1823 486 291 13 6 chrX 39838775 39838933 -122760997 + MLT1I LTR MaLR 1 159 -250 653 241 51 0 chrX 39838976 39839134 -122760796 + MER58A DNA MER1_type 9 174 -50 553 211 16 53 chrX 39839435 39839548 -122760382 + LTR37B LTR ERV1 7 112 -356 948 165 74 0 chrX 39839548 39839724 -122760206 - MER5A DNA MER1_type 0 189 1 553 211 16 53 chrX 39839724 39839800 -122760130 + LTR37B LTR ERV1 112 189 -279 520 179 34 102 chrX 39839887 39839980 -122759950 + LTR37B LTR ERV1 250 348 -120 2188 99 0 3 chrX 39839980 39840262 -122759668 - AluSq SINE Alu -12 301 21 520 179 34 102 chrX 39840262 39840403 -122759527 + LTR37B LTR ERV1 348 468 0 2016 165 21 16 chrX 39841967 39842392 -122757538 - L1MD1 LINE L1 0 6242 5816 6910 58 7 0 chrX 39842399 39843717 -122756213 - L1PA6 LINE L1 0 6154 4829 2303 75 3 0 chrX 39843717 39843999 -122755931 - AluSg SINE Alu -14 296 14 17626 143 34 2 chrX 39843999 39846940 -122752990 - L1M1 LINE L1 -4519 3046 12 270 229 14 14 chrX 39846940 39847010 -122752920 - L1MDb LINE L1 -4540 1866 1797 3447 212 54 42 chrX 39847010 39848386 -122751544 - L1MDb LINE L1 -4549 1857 467 1345 268 66 77 chrX 39848389 39849023 -122750907 - L1MDb LINE L1 -5776 633 7 1857 207 32 36 chrX 39849413 39849882 -122750048 + MLT1C LTR MaLR 1 467 0 478 266 28 21 chrX 39849882 39850025 -122749905 - MIR SINE MIR -103 159 16 195 208 38 57 chrX 39850731 39850784 -122749146 - L2 LINE L2 -9 3304 3253 21 0 0 0 chrX 39852899 39852920 -122747010 + AT_rich Low_complexity Low_complexity 1 21 0 242 123 18 0 chrX 39852978 39853035 -122746895 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1025 154 21 113 chrX 39853040 39853084 -122746846 - MER20 DNA MER1_type 0 219 173 2371 92 10 0 chrX 39853084 39853389 -122746541 - AluSx SINE Alu -4 308 1 1025 154 21 113 chrX 39853389 39853584 -122746346 - MER20 DNA MER1_type -46 173 2 353 156 0 0 chrX 39853609 39853673 -122746257 - MLT1H LTR MaLR -3 546 483 725 262 27 23 chrX 39853793 39854014 -122745916 - MLT1H LTR MaLR -249 300 79 2349 67 0 7 chrX 39854093 39854391 -122745539 + AluY SINE Alu 1 296 -15 4136 131 8 22 chrX 39854453 39855163 -122744767 - L1MA6 LINE L1 0 6300 5601 3291 125 10 0 chrX 39855163 39855653 -122744277 - L1PA15 LINE L1 -5 6160 5661 2459 86 17 1 chrX 39855659 39856108 -122743822 + L1P4 LINE L1 5159 5615 -550 2841 260 19 32 chrX 39856136 39856958 -122742972 - L1M3c LINE L1 -5329 812 1 792 199 61 51 chrX 39856996 39857192 -122742738 - MIR SINE MIR -64 198 1 24 0 0 0 chrX 39857974 39857998 -122741932 + AT_rich Low_complexity Low_complexity 1 24 0 486 336 101 34 chrX 39858415 39858853 -122741077 - L2 LINE L2 -2 3270 2804 1558 265 65 0 chrX 39858967 39859379 -122740551 + MER45C DNA AcHobo 1 439 -514 1359 291 32 32 chrX 39859365 39859832 -122740098 + MER45C DNA AcHobo 298 764 -189 * 1469 175 35 6 chrX 39859941 39860255 -122739675 + MER45B DNA AcHobo 718 1040 0 701 250 60 6 chrX 39860351 39860519 -122739411 - MER5A DNA MER1_type 0 189 13 1750 130 0 0 chrX 39860875 39861160 -122738770 + L1P LINE L1 4181 4465 -1681 2248 96 0 3 chrX 39861161 39861452 -122738478 + AluSx SINE Alu 9 298 -14 23 0 0 0 chrX 39861539 39861562 -122738368 + AT_rich Low_complexity Low_complexity 1 23 0 548 340 158 23 chrX 39861759 39862277 -122737653 - L3 LINE CR1 -374 1203 616 204 347 0 14 chrX 39862598 39862670 -122737260 + L2 LINE L2 2966 3036 -236 452 293 35 0 chrX 39862821 39862937 -122736993 + L2 LINE L2 3148 3267 -5 28 29 0 0 chrX 39863549 39863584 -122736346 + AT_rich Low_complexity Low_complexity 1 35 0 288 329 0 0 chrX 39864331 39864407 -122735523 + MER5B DNA MER1_type 3 78 -100 344 102 0 17 chrX 39864515 39864574 -122735356 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 254 268 0 42 chrX 39864574 39864645 -122735285 + L2 LINE L2 3203 3270 -2 716 157 37 0 chrX 39864741 39864875 -122735055 - Charlie1 DNA MER1_type 0 2761 2623 * 1123 204 35 0 chrX 39864862 39865093 -122734837 - Charlie1 DNA MER1_type -2522 239 1 21 0 0 0 chrX 39865376 39865397 -122734533 + AT_rich Low_complexity Low_complexity 1 21 0 286 250 228 0 chrX 39865521 39865613 -122734317 - MER5A DNA MER1_type 0 189 77 192 158 0 0 chrX 39866607 39866645 -122733285 + G-rich Low_complexity Low_complexity 1 38 0 2260 117 53 11 chrX 39867116 39867476 -122732454 + THE1C LTR MaLR 1 375 0 2956 118 24 9 chrX 39867476 39868352 -122731578 + THE1C-int LTR MaLR 1 928 -652 994 324 72 30 chrX 39868762 39869262 -122730668 + LTR33 LTR ERVL 1 521 0 14003 213 29 12 chrX 39869455 39874072 -122725858 - L1PA16 LINE L1 -2 6164 1630 6115 98 8 1 chrX 39874072 39875234 -122724696 + L1PB3 LINE L1 4983 6149 -5 5927 195 72 31 chrX 39875249 39875659 -122724271 - L1ME LINE L1 -487 5748 5356 306 0 0 0 chrX 39875659 39875693 -122724237 + (TG)n Simple_repeat Simple_repeat 2 35 0 5927 195 72 31 chrX 39875693 39877316 -122722614 - L1ME LINE L1 -879 5356 3646 6091 106 0 4 chrX 39877325 39878587 -122721343 - L1PB1 LINE L1 0 6867 5607 2044 65 0 0 chrX 39878587 39878849 -122721081 + L1PA6 LINE L1 5893 6154 0 13124 188 66 44 chrX 39878868 39884356 -122715574 - L1PB1 LINE L1 -1241 5621 6 6378 222 73 79 chrX 39884503 39885767 -122714163 - L1MEc LINE L1 -2576 3639 2369 4409 134 12 8 chrX 39885767 39886497 -122713433 - L1PB4 LINE L1 -7 6149 5417 6378 222 73 79 chrX 39886497 39888430 -122711500 - L1MEc LINE L1 -3846 2369 425 754 141 0 0 chrX 39888430 39888565 -122711365 - L1MA8 LINE L1 -11 6280 6146 6378 222 73 79 chrX 39888565 39888897 -122711033 - L1MEc LINE L1 -5790 425 165 2585 163 38 65 chrX 39888897 39889424 -122710506 + MLT2B2 LTR ERVL 1 513 -2 6378 222 73 79 chrX 39889424 39889556 -122710374 - L1MEc LINE L1 -6050 165 34 207 0 0 0 chrX 39889565 39889588 -122710342 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 492 275 119 29 chrX 39890842 39891086 -122708844 - LTR33 LTR ERVL -211 310 45 21 57 0 0 chrX 39891607 39891642 -122708288 + AT_rich Low_complexity Low_complexity 1 35 0 267 288 0 0 chrX 39891875 39891934 -122707996 - L2 LINE L2 -7 3306 3248 2496 250 109 27 chrX 39893068 39894242 -122705688 + L1ME3A LINE L1 4885 6162 -8 435 333 102 17 chrX 39894263 39894557 -122705373 - L2 LINE L2 -609 2705 2387 4883 172 40 18 chrX 39894571 39894856 -122705074 - L1MB7 LINE L1 0 6682 6405 3747 114 15 0 chrX 39894856 39895375 -122704555 - MER1A DNA MER1_type 0 527 1 4883 172 40 18 chrX 39895375 39896321 -122703609 - L1MB7 LINE L1 -277 6405 5410 4464 234 28 24 chrX 39896317 39897084 -122702846 - L1MB7 LINE L1 -2317 4327 3565 * 2272 119 0 0 chrX 39897084 39897394 -122702536 - AluSx SINE Alu -2 310 1 4464 234 28 24 chrX 39897394 39897782 -122702148 - L1MB7 LINE L1 -3079 3565 3180 2082 176 14 0 chrX 39897782 39898139 -122701791 + MLT1A1 LTR MaLR 4 365 0 8785 192 20 44 chrX 39898139 39899917 -122700013 + MLT1A1-int LTR MaLR 1 1735 0 2000 177 14 22 chrX 39899917 39900285 -122699645 + MLT1A1 LTR MaLR 1 365 0 4464 234 28 24 chrX 39900285 39900438 -122699492 - L1MB7 LINE L1 -3463 3181 3010 516 178 0 4 chrX 39900439 39900658 -122699272 + AluSx SINE Alu 1 298 -12 641 188 7 0 chrX 39900658 39900796 -122699134 - L1MB7 LINE L1 -3624 3020 2882 * 5962 121 9 4 chrX 39900794 39901726 -122698204 + L1MA5 LINE L1 5362 6297 -3 790 265 40 0 chrX 39901926 39902212 -122697718 - L1MB7 LINE L1 -3750 2894 2598 1871 216 57 7 chrX 39902254 39902760 -122697170 - L1MB7 LINE L1 -5216 1330 650 522 212 0 109 chrX 39902758 39902923 -122697007 - L1MB7 LINE L1 -6243 299 153 * 5884 79 11 16 chrX 39902941 39903420 -122696510 - L1MA2 LINE L1 0 7723 7250 2444 97 0 0 chrX 39903420 39903731 -122696199 - AluSx SINE Alu -1 311 1 5884 79 11 16 chrX 39903731 39904109 -122695821 - L1MA2 LINE L1 -473 7250 6871 2250 107 3 0 chrX 39904111 39904410 -122695520 - THE1B LTR MaLR 0 364 65 2606 107 3 8 chrX 39904452 39904818 -122695112 - THE1B LTR MaLR 0 364 1 13952 155 109 7 chrX 39904818 39910040 -122689890 - L1MA2 LINE L1 -743 6822 1078 354 119 373 104 chrX 39910063 39910197 -122689733 - L1MA2 LINE L1 -7300 265 96 6714 72 6 1 chrX 39910289 39911747 -122688183 - L1PA13 LINE L1 -6 6157 4696 296 252 47 47 chrX 39911749 39911856 -122688074 - L1MA2 LINE L1 -7458 107 1 * 792 200 7 0 chrX 39911830 39911980 -122687950 - L1M4 LINE L1 -6376 166 16 332 318 9 0 chrX 39911996 39912103 -122687827 - L2 LINE L2 -927 2387 2280 189 0 0 0 chrX 39912232 39912253 -122687677 + (TATG)n Simple_repeat Simple_repeat 2 22 0 599 233 61 0 chrX 39912448 39912611 -122687319 + MER5B DNA MER1_type 2 174 -4 831 217 17 29 chrX 39912702 39912877 -122687053 - MER58B DNA MER1_type 0 341 169 389 279 39 10 chrX 39913036 39913140 -122686790 + L2 LINE L2 3203 3309 -4 417 205 188 18 chrX 39913304 39913416 -122686514 - L2 LINE L2 -1 3271 3141 560 314 51 0 chrX 39914697 39914872 -122685058 + LTR33 LTR ERVL 34 217 -304 8470 63 8 178 chrX 39915046 39916716 -122683214 - SVA Other Other 0 1386 2 216 0 0 0 chrX 39916718 39916742 -122683188 + (GGGAGA)n Simple_repeat Simple_repeat 6 29 0 302 344 16 39 chrX 39917982 39918110 -122681820 - L2 LINE L2 0 3272 3148 225 255 120 115 chrX 39918243 39918435 -122681495 - MIR SINE MIR -66 196 4 2618 38 0 29 chrX 39919337 39919652 -122680278 - AluY SINE Alu -5 306 1 300 341 119 28 chrX 39919811 39919987 -122679943 - MIR SINE MIR -17 245 54 433 250 52 0 chrX 39921854 39921970 -122677960 - MIR SINE MIR -28 234 113 1043 247 71 0 chrX 39922158 39922397 -122677533 + MIR SINE MIR 1 256 -6 328 249 117 20 chrX 39922519 39922692 -122677238 - MIR SINE MIR -34 228 42 391 310 31 31 chrX 39924552 39924720 -122675210 + MIR SINE MIR 16 192 -66 566 256 154 8 chrX 39924722 39924956 -122674974 - LTR16A1 LTR ERVL -2 455 188 781 305 64 20 chrX 39925305 39925695 -122674235 - MER90 LTR ERV1 -18 596 190 531 216 59 69 chrX 39927552 39927854 -122672076 + MLT1H1 LTR MaLR 152 460 -107 403 192 13 0 chrX 39927889 39927966 -122671964 + Tigger5 DNA MER2_type 1 78 -2245 379 228 0 0 chrX 39927966 39928045 -122671885 - Tigger5 DNA MER2_type -3 2320 2242 * 388 150 0 0 chrX 39928041 39928101 -122671829 + Tigger5 DNA MER2_type 2264 2323 0 324 0 0 0 chrX 39928335 39928371 -122671559 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 71 0 0 chrX 39928371 39928399 -122671531 + (GA)n Simple_repeat Simple_repeat 1 28 0 236 297 16 0 chrX 39929081 39929145 -122670785 + MIR SINE MIR 59 123 -85 215 281 16 0 chrX 39929207 39929271 -122670659 + MIR3 SINE MIR 138 202 -6 331 277 50 20 chrX 39929391 39929492 -122670438 + L2 LINE L2 3210 3313 0 1110 304 48 44 chrX 39930135 39930682 -122669248 - LTR67 LTR ERVL -3 554 6 2235 114 0 3 chrX 39930818 39931116 -122668814 - AluSg SINE Alu -13 297 1 2134 41 0 22 chrX 39931309 39931579 -122668351 - L1PA8 LINE L1 0 6172 5909 21 0 0 0 chrX 39932635 39932656 -122667274 + AT_rich Low_complexity Low_complexity 1 21 0 1308 198 146 9 chrX 39932791 39933241 -122666689 - MLT1E LTR MaLR 0 593 4 6565 172 56 19 chrX 39933718 39936936 -122662994 + L1MA1 LINE L1 2747 6295 -7 1030 159 18 12 chrX 39936938 39937108 -122662822 + AluJo SINE Alu 120 290 -22 405 317 19 29 chrX 39937134 39937342 -122662588 + L1MEc LINE L1 985 1190 -5206 273 208 8 64 chrX 39937474 39937599 -122662331 + L1MEc LINE L1 1366 1483 -4913 1520 156 8 0 chrX 39938043 39938287 -122661643 - L1PB3 LINE L1 -1 6153 5908 354 156 10 73 chrX 39938335 39938431 -122661499 - MER5C DNA MER1_type -2 322 233 519 252 42 0 chrX 39938459 39938578 -122661352 - MER5C DNA MER1_type -200 124 1 2544 52 3 3 chrX 39939051 39939361 -122660569 - AluY SINE Alu -1 310 1 463 256 33 0 chrX 39940308 39940429 -122659501 - MER103 DNA DNA -16 150 26 24 0 0 0 chrX 39940458 39940482 -122659448 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 39940584 39940620 -122659310 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chrX 39940673 39940724 -122659206 + AT_rich Low_complexity Low_complexity 1 51 0 721 246 19 0 chrX 39940744 39940955 -122658975 + L1MEc LINE L1 2402 2616 -3599 723 148 16 0 chrX 39940963 39941091 -122658839 - L1PA15 LINE L1 -4 6161 6032 1863 68 4 4 chrX 39941091 39941327 -122658603 - AluY SINE Alu -75 236 1 2825 251 47 1 chrX 39941414 39942114 -122657816 + L1M3b LINE L1 9 740 -5541 1307 263 38 73 chrX 39942212 39942718 -122657212 + L1M3b LINE L1 588 1075 -5206 184 328 0 35 chrX 39943397 39943455 -122656475 - L3 LINE CR1 -7 1570 1515 315 118 0 20 chrX 39943715 39943766 -122656164 + MER20 DNA MER1_type 170 219 0 791 274 67 80 chrX 39943848 39943903 -122656027 - L2 LINE L2 -1900 1414 1360 1012 184 39 67 chrX 39943903 39944185 -122655745 - ORSL DNA AcHobo 0 275 2 791 274 67 80 chrX 39944185 39944604 -122655326 - L2 LINE L2 -1954 1360 946 1691 217 86 9 chrX 39945196 39945625 -122654305 + LTR40b LTR ERVL 1 462 0 335 276 194 15 chrX 39946328 39946462 -122653468 + MIR SINE MIR 29 186 -76 252 105 0 0 chrX 39946464 39946502 -122653428 + tRNA-Leu-TTG tRNA tRNA 1 38 -48 237 315 14 0 chrX 39946504 39946577 -122653353 + MIR SINE MIR 173 246 -16 2321 87 0 3 chrX 39946726 39947024 -122652906 - AluSc SINE Alu -12 297 1 1461 97 0 0 chrX 39947211 39947396 -122652534 + AluSq SINE Alu 1 185 -128 1147 259 80 62 chrX 39947424 39947881 -122652049 - MLT1J LTR MaLR 0 511 43 468 0 0 0 chrX 39947881 39947933 -122651997 + (CA)n Simple_repeat Simple_repeat 1 52 0 1147 259 80 62 chrX 39947933 39947977 -122651953 - MLT1J LTR MaLR -468 43 1 292 51 0 0 chrX 39948230 39948269 -122651661 + MER74C LTR ERVL 4 42 -418 1328 215 33 22 chrX 39949304 39949733 -122650197 + MER74A LTR ERVL 9 523 -35 15799 135 42 7 chrX 39949891 39952514 -122647416 + Tigger2 DNA MER2_type 2 2716 -2 267 389 54 57 chrX 39952608 39952888 -122647042 - L2 LINE L2 0 3272 2994 252 315 0 0 chrX 39952906 39952998 -122646932 + L1ME1 LINE L1 149 240 -5965 1756 248 52 14 chrX 39953001 39953440 -122646490 + L1M4b LINE L1 1 456 -6403 334 105 18 0 chrX 39953445 39953502 -122646428 + L1M4b LINE L1 1238 1295 -5564 739 203 16 22 chrX 39953516 39953698 -122646232 + L1MA2 LINE L1 238 418 -7147 11443 170 59 20 chrX 39953709 39955545 -122644385 + L1MA2 LINE L1 1703 3465 -4258 1750 196 3 3 chrX 39955545 39955851 -122644079 + AluJb SINE Alu 1 306 -6 11443 170 59 20 chrX 39955851 39959533 -122640397 + L1MA2 LINE L1 3465 7481 -242 2024 95 20 48 chrX 39959550 39959907 -122640023 + L1MA2 LINE L1 5958 6304 0 1619 209 46 0 chrX 39962582 39962931 -122636999 - MLT1A1 LTR MaLR 0 365 1 243 316 107 8 chrX 39963036 39963280 -122636650 + L2 LINE L2 3046 3313 0 331 198 62 12 chrX 39963531 39963610 -122636320 + MLT1H LTR MaLR 138 220 -329 2110 248 47 6 chrX 39963610 39964143 -122635787 - MER76 LTR ERV 0 688 134 1834 158 41 19 chrX 39964147 39964513 -122635417 + THE1C LTR MaLR 2 375 0 488 88 12 12 chrX 39964517 39964597 -122635333 + THE1C-int LTR MaLR 5 84 -1567 2117 259 61 15 chrX 39964719 39965734 -122634196 + L1ME1 LINE L1 803 1864 -4532 270 206 32 0 chrX 39965749 39965812 -122634118 - MER58A DNA MER1_type -11 213 149 2109 174 61 15 chrX 39965814 39966223 -122633707 - MSTA LTR MaLR 0 428 1 337 162 0 15 chrX 39966223 39966291 -122633639 - MSTA-int LTR MaLR 0 1651 1585 * 533 162 6 0 chrX 39966283 39966385 -122633545 - MSTA-int LTR MaLR -186 1462 1288 5009 161 9 31 chrX 39966388 39967321 -122632609 + MST-int LTR MaLR 736 1647 -4 3916 166 9 25 chrX 39967309 39967921 -122632009 - MSTA-int LTR MaLR -908 743 144 * 2248 107 7 0 chrX 39967921 39968219 -122631711 + AluSc SINE Alu 1 300 -9 3916 166 9 25 chrX 39968219 39968361 -122631569 - MSTA-int LTR MaLR -1507 144 1 2095 182 60 24 chrX 39968361 39968774 -122631156 - MSTA LTR MaLR 0 428 1 509 274 7 59 chrX 39968779 39968869 -122631061 - MER58A DNA MER1_type -196 145 65 2195 118 0 0 chrX 39968869 39969158 -122630772 + AluSx SINE Alu 1 289 -23 509 274 7 59 chrX 39969158 39969220 -122630710 - MER58A DNA MER1_type -276 65 1 1839 223 90 14 chrX 39969221 39969903 -122630027 + L1ME1 LINE L1 1866 2549 -3666 * 3605 219 70 28 chrX 39969892 39971259 -122628671 + L1ME1 LINE L1 4238 5658 -577 3242 209 34 12 chrX 39971295 39972024 -122627906 - L1MB8 LINE L1 -6 6172 5428 1465 175 29 92 chrX 39972016 39972461 -122627469 - L1MB8 LINE L1 -2125 4021 3605 * 243 260 10 58 chrX 39972546 39972650 -122627280 - L1M4b LINE L1 -4564 2574 2476 6588 247 63 19 chrX 39972815 39975132 -122624798 - L1M4b LINE L1 -4550 2409 3 2157 242 24 17 chrX 39975133 39975708 -122624222 + L1ME1 LINE L1 5649 6227 -8 405 346 79 0 chrX 39975967 39976094 -122623836 - L2 LINE L2 0 3272 3136 1277 245 0 0 chrX 39976397 39976630 -122623300 + Tigger5 DNA MER2_type 1 233 -2090 431 169 60 12 chrX 39976624 39976707 -122623223 + Tigger5 DNA MER2_type 2236 2322 -1 * 268 298 65 16 chrX 39976800 39976924 -122623006 + LTR67 LTR ERVL 428 557 0 1137 172 0 5 chrX 39977078 39977264 -122622666 + MER5A DNA MER1_type 2 186 -3 334 364 83 20 chrX 39977277 39977579 -122622351 - L2 LINE L2 -618 2696 2376 5116 162 15 10 chrX 39977590 39978950 -122620980 - L1MB5 LINE L1 -8 6166 4801 * 9874 210 15 10 chrX 39978945 39979803 -122620127 - L1P4 LINE L1 -727 5439 4587 2025 106 64 22 chrX 39979803 39980162 -122619768 + THE1C LTR MaLR 2 375 0 9874 210 15 10 chrX 39980162 39981650 -122618280 - L1P4 LINE L1 -1579 4587 3078 627 345 110 46 chrX 39981667 39982672 -122617258 - L2 LINE L2 -1336 1978 1039 2310 95 3 0 chrX 39982672 39982968 -122616962 + AluSq SINE Alu 1 297 -16 627 345 110 46 chrX 39982968 39983030 -122616900 - L2 LINE L2 -2275 1039 982 2208 137 33 0 chrX 39983030 39983367 -122616563 + MER7A DNA MER2_type 1 346 0 627 345 110 46 chrX 39983367 39983493 -122616437 - L2 LINE L2 -2332 982 866 1764 67 14 9 chrX 39983493 39983716 -122616214 + AluY SINE Alu 79 302 -9 627 345 110 46 chrX 39983716 39984177 -122615753 - L2 LINE L2 -2448 866 215 338 340 58 6 chrX 39984197 39984353 -122615577 - MIR SINE MIR -34 228 65 799 302 24 41 chrX 39985110 39985405 -122614525 + LTR16A1 LTR ERVL 168 457 0 360 284 28 66 chrX 39985513 39985651 -122614279 + L1MC4 LINE L1 5039 5168 -978 1897 151 35 0 chrX 39985651 39985989 -122613941 + L1MA9 LINE L1 5963 6312 0 360 284 28 66 chrX 39985989 39986061 -122613869 + L1MC4 LINE L1 5168 5241 -905 329 277 104 9 chrX 39986097 39986317 -122613613 + L1MC4 LINE L1 5264 5504 -2304 1340 254 83 10 chrX 39986321 39986719 -122613211 + L1MC4 LINE L1 5442 5868 -1940 544 196 55 55 chrX 39986726 39986925 -122613005 + L1MC4 LINE L1 7392 7590 -452 4482 100 43 4 chrX 39986929 39987630 -122612300 + L1MA3 LINE L1 5578 6305 0 1385 230 39 48 chrX 39987681 39988004 -122611926 + L1MC4 LINE L1 7580 7899 -143 306 0 0 0 chrX 39988004 39988038 -122611892 + (TA)n Simple_repeat Simple_repeat 2 35 0 1385 230 39 48 chrX 39988038 39988149 -122611781 + L1MC4 LINE L1 7899 8010 -32 245 222 0 0 chrX 39989195 39989240 -122610690 - L2 LINE L2 -12 3301 3257 337 301 9 0 chrX 39989787 39989900 -122610030 - L1ME4a LINE L1 -283 5838 5725 348 251 49 137 chrX 39989996 39990303 -122609627 - L1ME4a LINE L1 -2225 5583 5304 431 221 63 0 chrX 39990706 39990801 -122609129 - L2 LINE L2 -1 3312 3212 513 176 331 0 chrX 39992242 39992378 -122607552 - MER5A DNA MER1_type 0 189 9 5350 141 28 27 chrX 39992661 39994183 -122605747 - L1MA8 LINE L1 -1 7001 5481 800 111 24 8 chrX 39994183 39994309 -122605621 - FLAM_C SINE Alu -5 128 1 5350 141 28 27 chrX 39994309 39994572 -122605358 - L1MA8 LINE L1 -1521 5481 5180 1668 178 20 17 chrX 39994572 39994864 -122605066 - AluJb SINE Alu -19 293 1 5350 141 28 27 chrX 39994864 39994984 -122604946 - L1MA8 LINE L1 -1822 5180 5062 957 178 23 46 chrX 39994958 39995177 -122604753 - L1MA8 LINE L1 -3307 3541 3328 * 931 191 9 22 chrX 39995175 39995406 -122604524 - L1MA8 LINE L1 -3756 3092 2865 * 528 70 0 0 chrX 39995407 39995478 -122604452 - MADE1 DNA Mariner -9 71 1 6746 208 125 119 chrX 39995481 39996411 -122603519 - L1MA8 LINE L1 -3992 2857 1933 2617 132 31 5 chrX 39996411 39996827 -122603103 + MSTA LTR MaLR 2 428 0 6746 208 125 119 chrX 39996827 39998736 -122601194 - L1MA8 LINE L1 -4916 1933 3 3076 171 51 3 chrX 39998737 39998837 -122601093 - L1 LINE L1 -2808 4298 4204 2186 100 23 7 chrX 39998837 39999138 -122600792 - AluSq SINE Alu -7 306 1 3076 171 51 3 chrX 39999138 39999709 -122600221 - L1 LINE L1 -2902 4204 3595 3562 260 43 35 chrX 39999727 40001841 -122598089 - L1 LINE L1 -4220 2886 7 492 241 157 63 chrX 40002679 40002870 -122597060 + MER63A DNA MER1_type 1 209 -1 609 275 81 76 chrX 40002923 40003406 -122596524 + MLT1H LTR MaLR 25 548 -1 387 261 322 4 chrX 40004027 40004257 -122595673 - L2 LINE L2 0 3313 3011 209 283 132 72 chrX 40004313 40004465 -122595465 - MIR SINE MIR -56 206 46 228 143 0 0 chrX 40005236 40005278 -122594652 + (CA)n Simple_repeat Simple_repeat 2 43 0 706 252 34 15 chrX 40005291 40005497 -122594433 - MER63A DNA MER1_type 0 210 1 612 223 57 0 chrX 40005684 40005841 -122594089 - L1MD2 LINE L1 0 6359 6194 2693 215 77 27 chrX 40005861 40007048 -122592882 - L1MC/D LINE L1 -610 6026 4771 10479 147 39 129 chrX 40007066 40008850 -122591080 - L1MA2 LINE L1 -2 7721 5777 345 82 0 0 chrX 40008850 40008899 -122591031 + (TG)n Simple_repeat Simple_repeat 2 50 0 10479 147 39 129 chrX 40008899 40009362 -122590568 - L1MA2 LINE L1 -1946 5777 5274 2175 122 0 0 chrX 40009362 40009658 -122590272 + AluSx SINE Alu 1 296 -16 10479 147 39 129 chrX 40009658 40011718 -122588212 - L1MA2 LINE L1 -2449 5274 3822 241 203 0 31 chrX 40011719 40011783 -122588147 - L1MA2 LINE L1 -3843 3722 3661 7485 181 19 21 chrX 40011785 40013146 -122586784 - L1MA2 LINE L1 -6188 1377 19 1554 170 40 7 chrX 40013147 40013423 -122586507 - AluJo SINE Alu -15 297 13 1231 206 15 83 chrX 40013436 40013835 -122586095 - L1MC/D LINE L1 -1765 4775 4404 7348 186 53 34 chrX 40013902 40015955 -122583975 - L1MDa LINE L1 -3611 2929 843 669 261 22 18 chrX 40016069 40016291 -122583639 + L1ME3A LINE L1 5729 5951 -219 201 333 39 26 chrX 40016460 40016538 -122583392 - MER5B DNA MER1_type -5 173 95 * 230 258 30 15 chrX 40016530 40016596 -122583334 + MER5A DNA MER1_type 123 189 0 236 270 44 58 chrX 40016975 40017112 -122582818 + L2 LINE L2 2553 2687 -627 1893 174 60 20 chrX 40017112 40017514 -122582416 - L1MD3 LINE L1 -4 7991 7574 1448 285 40 7 chrX 40017661 40018082 -122581848 - LTR16A LTR ERVL 0 450 16 227 393 43 0 chrX 40018109 40018249 -122581681 + L2 LINE L2 2912 3057 -215 3518 156 16 7 chrX 40018501 40019066 -122580864 - MER44D DNA MER2_type 0 605 164 536 204 0 0 chrX 40019061 40019149 -122580781 + MER44D DNA MER2_type 518 605 0 * 1018 194 0 0 chrX 40019293 40019458 -122580472 - MER44D DNA MER2_type -540 165 1 1174 242 112 9 chrX 40019599 40019938 -122579992 - MLT1A2 LTR MaLR 0 374 1 464 213 85 85 chrX 40020186 40020374 -122579556 - MER5A DNA MER1_type -1 188 1 205 189 0 0 chrX 40020556 40020593 -122579337 + (CA)n Simple_repeat Simple_repeat 2 38 0 2696 224 131 11 chrX 40020680 40021384 -122578546 - MER21B LTR ERV1 -57 806 19 422 247 0 0 chrX 40021391 40021476 -122578454 - MER21B LTR ERV1 -767 96 12 191 88 29 0 chrX 40022995 40023029 -122576901 + (TAA)n Simple_repeat Simple_repeat 1 35 0 285 29 0 0 chrX 40023080 40023114 -122576816 + (CA)n Simple_repeat Simple_repeat 1 34 0 698 197 73 132 chrX 40023805 40024176 -122575754 + MSTB1 LTR MaLR 1 349 -83 236 216 20 0 chrX 40024191 40024242 -122575688 + CT-rich Low_complexity Low_complexity 1 52 0 186 156 0 0 chrX 40024242 40024287 -122575643 + (CTCA)n Simple_repeat Simple_repeat 4 48 0 2325 96 7 0 chrX 40024396 40024697 -122575233 + AluY SINE Alu 1 303 -8 4786 20 2 0 chrX 40024781 40025335 -122574595 - L1PA2 LINE L1 0 6155 5601 214 318 75 47 chrX 40025514 40025621 -122574309 - MIR SINE MIR -69 139 30 15041 193 17 6 chrX 40025738 40025824 -122574106 - L1PA15 LINE L1 -307 6509 6425 3667 87 19 4 chrX 40025824 40026342 -122573588 - L1PA10 LINE L1 -2 6166 5641 15041 193 17 6 chrX 40026342 40030193 -122569737 - L1PA15 LINE L1 -391 6425 2534 4042 263 68 35 chrX 40030187 40031607 -122568323 - L1PA15 LINE L1 -5192 1595 128 * 4075 240 19 6 chrX 40031609 40032799 -122567131 - L1M4 LINE L1 -842 5304 4099 1030 195 50 8 chrX 40032801 40033062 -122566868 + L1 LINE L1 2665 2936 -3210 578 275 3 35 chrX 40033069 40033356 -122566574 + L1M3e LINE L1 490 767 -6263 * 4209 137 16 7 chrX 40033348 40034409 -122565521 + L1MA9 LINE L1 4578 5644 -668 375 211 40 0 chrX 40034492 40034568 -122565362 - Tigger5 DNA MER2_type -2244 79 1 3336 158 24 17 chrX 40034568 40035231 -122564699 + L1MA9 LINE L1 5645 6312 0 599 296 103 0 chrX 40035393 40035596 -122564334 + MIR SINE MIR 2 225 -37 9436 197 60 10 chrX 40035832 40035848 -122564082 - L1M4 LINE L1 -546 5638 5624 3675 96 277 0 chrX 40035848 40036495 -122563435 + LTR12 LTR ERV1 1 826 0 9436 197 60 10 chrX 40036495 40038343 -122561587 - L1M4 LINE L1 -560 5624 3581 2014 162 89 13 chrX 40038343 40038738 -122561192 + MSTA LTR MaLR 1 425 -3 9436 197 60 10 chrX 40038738 40039671 -122560259 - L1M4 LINE L1 -2603 3581 2697 207 178 67 22 chrX 40040885 40040930 -122559000 - L3 LINE CR1 -1 1576 1530 351 0 0 0 chrX 40041515 40041554 -122558376 + (CA)n Simple_repeat Simple_repeat 2 40 0 425 292 100 0 chrX 40041676 40041796 -122558134 + L2 LINE L2 3141 3272 0 350 0 44 0 chrX 40043450 40043495 -122556435 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2491 54 0 16 chrX 40044322 40044635 -122555295 + AluY SINE Alu 1 308 -3 527 339 83 26 chrX 40044926 40045305 -122554625 - L2 LINE L2 -267 3046 2634 5612 147 12 25 chrX 40045311 40046075 -122553855 - L1PA13 LINE L1 0 6163 5391 2158 65 0 4 chrX 40046075 40046352 -122553578 - L1PA6 LINE L1 -4 6150 5875 5612 147 12 25 chrX 40046352 40047334 -122552596 - L1PA13 LINE L1 -772 5391 4439 783 331 114 33 chrX 40047335 40047887 -122552043 - L2 LINE L2 -687 2627 2031 5018 113 12 46 chrX 40048068 40048874 -122551056 - LTR39 LTR ERV1 -4 779 1 180 0 0 0 chrX 40049073 40049093 -122550837 + (T)n Simple_repeat Simple_repeat 1 20 0 765 215 47 19 chrX 40049922 40050178 -122549752 - L1M4 LINE L1 -2261 3885 3623 * 2036 226 76 48 chrX 40050174 40050895 -122549035 + L1MCc LINE L1 2 1088 -5334 449 301 6 6 chrX 40050902 40051068 -122548862 + L1ME1 LINE L1 5999 6164 -2 789 244 10 10 chrX 40051080 40051285 -122548645 + L1MCc LINE L1 1075 1279 -5143 2002 261 88 10 chrX 40051310 40052235 -122547695 - L1M4 LINE L1 -2511 3635 2639 291 251 188 18 chrX 40054040 40054370 -122545560 - L1M4 LINE L1 -3546 2600 2215 510 296 197 11 chrX 40054373 40054550 -122545380 - L1M4 LINE L1 -1311 4835 4692 387 0 0 0 chrX 40054550 40054593 -122545337 + (CA)n Simple_repeat Simple_repeat 2 44 0 510 296 197 11 chrX 40054593 40054790 -122545140 - L1M4 LINE L1 -1454 4692 4391 4383 200 106 96 chrX 40054836 40054938 -122544992 - L1MD3 LINE L1 -10 7985 7885 2526 78 5 56 chrX 40054938 40055312 -122544618 + THE1A LTR MaLR 1 355 0 4383 200 106 96 chrX 40055312 40055789 -122544141 - L1MD3 LINE L1 -110 7885 7414 504 184 19 10 chrX 40055789 40055892 -122544038 - MLT1F1 LTR MaLR -442 125 22 4383 200 106 96 chrX 40055892 40056874 -122543056 - L1MD3 LINE L1 -581 7414 6302 9268 191 26 14 chrX 40056876 40059227 -122540703 + L1PA16 LINE L1 2951 5343 -823 3384 47 0 2 chrX 40059227 40059636 -122540294 + L1PA6 LINE L1 5736 6143 -11 9268 191 26 14 chrX 40059636 40060460 -122539470 + L1PA16 LINE L1 5343 6156 -10 22 0 0 0 chrX 40060460 40060482 -122539448 + AT_rich Low_complexity Low_complexity 1 22 0 2988 213 23 4 chrX 40060555 40061288 -122538642 - L1ME1 LINE L1 -18 6148 5402 1199 230 8 38 chrX 40061389 40061425 -122538505 - L1ME1 LINE L1 -788 5358 5322 2146 115 3 0 chrX 40061425 40061721 -122538209 - AluSx SINE Alu -15 297 1 1199 230 8 38 chrX 40061721 40062080 -122537850 - L1ME1 LINE L1 -824 5322 4975 665 292 113 23 chrX 40062084 40062859 -122537071 - L1ME1 LINE L1 -1819 4327 3483 322 259 185 29 chrX 40062863 40062900 -122537030 - L1ME1 LINE L1 -2696 3450 3420 1713 169 127 8 chrX 40062900 40063254 -122536676 + MSTD LTR MaLR 1 396 0 322 259 185 29 chrX 40063254 40063421 -122536509 - L1ME1 LINE L1 -2726 3420 3214 242 228 0 0 chrX 40064028 40064085 -122535845 - MER103 DNA DNA -41 125 69 24 67 0 0 chrX 40064474 40064519 -122535411 + AT_rich Low_complexity Low_complexity 1 45 0 2233 129 0 0 chrX 40065670 40065973 -122533957 + AluSx SINE Alu 1 303 -9 246 105 0 0 chrX 40065973 40066011 -122533919 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 235 309 0 12 chrX 40066063 40066147 -122533783 + MIR3 SINE MIR 124 206 -2 1870 186 16 32 chrX 40066186 40066562 -122533368 - MLT1A2 LTR MaLR 0 374 5 796 231 61 78 chrX 40066780 40067140 -122532790 - MLT1J LTR MaLR 0 511 158 1649 191 27 43 chrX 40067519 40067890 -122532040 + MLT1A1 LTR MaLR 1 365 0 349 277 0 0 chrX 40068176 40068259 -122531671 - LTR16C LTR ERVL 0 491 409 2246 94 37 0 chrX 40068324 40068623 -122531307 + AluSg SINE Alu 1 310 0 1002 217 237 84 chrX 40069437 40069842 -122530088 + MLT1D LTR MaLR 1 467 0 23 33 0 0 chrX 40070010 40070040 -122529890 + AT_rich Low_complexity Low_complexity 1 30 0 413 234 156 7 chrX 40071360 40071501 -122528429 - MIR SINE MIR -54 208 47 2319 73 17 0 chrX 40071549 40071836 -122528094 + AluY SINE Alu 1 292 -19 1846 230 81 4 chrX 40072005 40072526 -122527404 - L1ME1 LINE L1 -10 6156 5596 482 237 26 33 chrX 40072528 40072547 -122527383 - L1MA10 LINE L1 0 6334 6316 783 256 58 47 chrX 40072547 40072911 -122527019 - L1ME1 LINE L1 -5 6230 5863 3490 100 23 18 chrX 40072932 40073500 -122526430 - L1PA13 LINE L1 -8 6155 5585 14010 170 20 2 chrX 40073501 40076232 -122523698 - L1PA13 LINE L1 -1120 5026 2246 531 194 9 0 chrX 40076243 40076351 -122523579 - L1ME1 LINE L1 -393 5842 5734 1974 203 24 7 chrX 40076407 40076930 -122523000 - L1ME1 LINE L1 -474 5761 5232 1233 85 111 0 chrX 40076946 40077145 -122522785 - L1MA2 LINE L1 0 6304 6084 312 157 0 0 chrX 40077149 40077200 -122522730 - MSTA LTR MaLR 0 428 378 848 125 8 0 chrX 40077209 40077337 -122522593 + THE1B LTR MaLR 236 364 0 3152 90 0 0 chrX 40077337 40077770 -122522160 + THE1B-int LTR MaLR 1 433 -1147 * 5932 17 1 0 chrX 40077766 40078485 -122521445 + L1PA3 LINE L1 5283 6002 -153 1001 105 66 7 chrX 40078585 40078737 -122521193 + THE1B LTR MaLR 204 364 0 5076 88 0 10 chrX 40078737 40079468 -122520462 + L1PB1 LINE L1 5394 6117 -34 1189 175 53 0 chrX 40079492 40079720 -122520210 + MSTA LTR MaLR 189 428 0 2473 250 33 18 chrX 40079720 40080657 -122519273 - L1ME1 LINE L1 -2166 4049 3099 545 179 15 22 chrX 40080653 40080787 -122519143 - L1ME1 LINE L1 -4278 2118 1986 * 401 307 0 10 chrX 40082423 40082524 -122517406 + MIR SINE MIR 30 129 -133 4437 105 142 95 chrX 40082826 40084244 -122515686 - pTR5 LTR ERV1 0 1683 31 664 297 38 9 chrX 40086112 40086324 -122513606 + MIR SINE MIR 45 262 0 1769 177 34 0 chrX 40086632 40086926 -122513004 + AluJo SINE Alu 1 304 -8 491 333 88 31 chrX 40087235 40087553 -122512377 - MER102b DNA MER1_type 0 341 6 252 299 102 24 chrX 40087842 40087969 -122511961 + MIR SINE MIR 65 201 -61 200 360 40 20 chrX 40089592 40089692 -122510238 - MER5A DNA MER1_type -85 104 3 4748 171 51 24 chrX 40089710 40090004 -122509926 - Charlie1 DNA MER1_type 0 2761 2476 2253 120 0 0 chrX 40090004 40090304 -122509626 + AluSg SINE Alu 1 300 -10 4748 171 51 24 chrX 40090304 40091092 -122508838 - Charlie1 DNA MER1_type -285 2476 1650 231 36 0 0 chrX 40091092 40091120 -122508810 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 298 143 0 63 chrX 40091225 40091288 -122508642 - MLT1B LTR MaLR -331 59 1 353 148 0 0 chrX 40091503 40091564 -122508366 + L1MA7 LINE L1 6185 6245 -46 3503 240 33 17 chrX 40091574 40092446 -122507484 + L1PA15 LINE L1 1 886 -5901 4482 199 44 43 chrX 40092584 40093682 -122506248 + L1PA15 LINE L1 1103 2201 -4586 14254 205 10 24 chrX 40093689 40097244 -122502686 + L1PA15 LINE L1 2480 5983 -823 1948 156 0 7 chrX 40097244 40097546 -122502384 + AluSx SINE Alu 1 300 -12 963 143 6 56 chrX 40097554 40097715 -122502215 + AluSg/x SINE Alu 145 297 -15 5394 120 5 0 chrX 40097716 40098549 -122501381 + L1PA15 LINE L1 5973 6809 -7 1316 146 54 0 chrX 40099180 40099440 -122500490 + L1MB3 LINE L1 5690 5963 -220 1741 188 3 13 chrX 40100155 40100458 -122499472 - AluJo SINE Alu -12 300 1 275 341 11 0 chrX 40100613 40100704 -122499226 + MIR SINE MIR 21 112 -150 935 237 93 35 chrX 40101753 40102277 -122497653 - MLT1G LTR MaLR 0 555 1 838 238 31 35 chrX 40102734 40102961 -122496969 - MIR SINE MIR -3 259 34 386 303 35 14 chrX 40104029 40104171 -122495759 - L2 LINE L2 -4 3309 3165 216 339 108 38 chrX 40104321 40104637 -122495293 - L2 LINE L2 -340 2974 2637 582 293 17 11 chrX 40104638 40104819 -122495111 + MIR SINE MIR 81 262 0 27 0 0 0 chrX 40105828 40105855 -122494075 + AT_rich Low_complexity Low_complexity 1 27 0 274 197 0 16 chrX 40106022 40106083 -122493847 - L1ME3A LINE L1 -96 6074 6015 2230 97 0 0 chrX 40106098 40106397 -122493533 - AluSg1 SINE Alu -10 299 1 7525 168 5 0 chrX 40106409 40108567 -122491363 - L1PA13 LINE L1 -4 6159 3988 283 154 0 31 chrX 40108572 40108637 -122491293 - L1PA13 LINE L1 -2712 3434 3372 * 4751 176 20 7 chrX 40108627 40109529 -122490401 - MSTB-int LTR MaLR -737 914 1 1876 177 77 17 chrX 40109529 40109931 -122489999 - MSTB LTR MaLR 0 426 1 5060 130 8 0 chrX 40110137 40111578 -122488352 + L1PA13 LINE L1 4399 5847 -316 943 194 44 0 chrX 40112415 40112595 -122487335 + L1PB4 LINE L1 5961 6148 -8 511 204 0 26 chrX 40112718 40112831 -122487099 - L2 LINE L2 -1 3312 3203 6394 182 47 95 chrX 40112841 40114722 -122485208 + L1MC3 LINE L1 5988 7778 -7 485 285 96 34 chrX 40114757 40115048 -122484882 - L2 LINE L2 -177 3136 2828 227 302 123 22 chrX 40115168 40115347 -122484583 - MIR SINE MIR -29 233 37 249 33 0 0 chrX 40115684 40115714 -122484216 + (TG)n Simple_repeat Simple_repeat 1 30 0 205 182 0 0 chrX 40116877 40116910 -122483020 + (CA)n Simple_repeat Simple_repeat 2 34 0 298 267 289 0 chrX 40117731 40117866 -122482064 + MIR3 SINE MIR 34 207 -1 196 222 14 83 chrX 40118192 40118264 -122481666 - L2 LINE L2 -3 3269 3203 630 320 97 45 chrX 40118687 40119150 -122480780 - L2 LINE L2 -23 3290 2804 189 302 0 63 chrX 40119275 40119338 -122480592 - MIR SINE MIR -172 90 32 2835 118 31 2 chrX 40119476 40119892 -122480038 - MSTA LTR MaLR 0 428 1 2377 178 36 26 chrX 40120377 40120729 -122479201 + MLT1D LTR MaLR 1 361 -144 5646 78 78 0 chrX 40120729 40121495 -122478435 - LTR12 LTR ERV1 0 826 1 2377 178 36 26 chrX 40121495 40121642 -122478288 + MLT1D LTR MaLR 361 505 0 1724 194 7 3 chrX 40122526 40122819 -122477111 + AluJb SINE Alu 1 294 -18 2377 61 0 16 chrX 40122826 40123163 -122476767 + AluY SINE Alu 1 311 0 262 207 35 0 chrX 40123207 40123265 -122476665 + AluJ/monomer SINE Alu 234 293 -9 197 139 23 0 chrX 40124363 40124406 -122475524 + (CA)n Simple_repeat Simple_repeat 1 44 0 * 393 139 23 12 chrX 40124405 40124491 -122475439 + (TA)n Simple_repeat Simple_repeat 2 88 0 279 303 152 0 chrX 40124491 40124623 -122475307 + Charlie8 DNA MER1_type 47 198 -2219 1103 265 12 19 chrX 40125103 40125524 -122474406 + L2 LINE L2 2738 3156 -157 1407 145 11 25 chrX 40125524 40125806 -122474124 - Tigger6 DNA MER2_type -1 1596 1319 4218 145 38 43 chrX 40125811 40126189 -122473741 + L1MB4 LINE L1 5336 5715 -465 2068 125 13 16 chrX 40126189 40126494 -122473436 - AluSx SINE Alu -8 304 1 4218 145 38 43 chrX 40126494 40126965 -122472965 + L1MB4 LINE L1 5715 6180 0 2808 149 24 15 chrX 40126983 40127526 -122472404 + L1MA4A LINE L1 5575 6122 -181 390 163 12 0 chrX 40127529 40127609 -122472321 + L1MA4A LINE L1 6188 6268 -35 1906 179 5 18 chrX 40127609 40128001 -122471929 - Tigger6 DNA MER2_type -261 1336 950 241 263 0 0 chrX 40128196 40128272 -122471658 - Tigger3(Golem) DNA MER2_type -1515 1514 1439 1781 174 31 0 chrX 40128372 40128689 -122471241 - Tigger6 DNA MER2_type -756 327 1 622 234 14 21 chrX 40128691 40128836 -122471094 + L2 LINE L2 3160 3303 -10 217 250 0 0 chrX 40128840 40128888 -122471042 + GA-rich Low_complexity Low_complexity 3 50 0 201 325 100 0 chrX 40128890 40128970 -122470960 - MIR3 SINE MIR -40 168 81 786 125 6 30 chrX 40129821 40129989 -122469941 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 390 95 12 107 chrX 40130901 40130985 -122468945 + MER91C DNA MER1_type 1 76 -64 347 283 104 9 chrX 40131092 40131198 -122468732 + L2 LINE L2 3156 3271 -1 1447 191 58 25 chrX 40132020 40132382 -122467548 + MLT1A2 LTR MaLR 1 374 0 496 269 196 12 chrX 40132406 40132604 -122467326 + MIR SINE MIR 13 248 -14 370 340 166 34 chrX 40134550 40135242 -122464688 + L2 LINE L2 2286 3064 -208 1808 227 48 10 chrX 40135758 40136238 -122463692 + L1MEc LINE L1 37 534 -5862 581 252 6 16 chrX 40136273 40136466 -122463464 + L1MA10 LINE L1 5979 6331 -3 1584 178 125 0 chrX 40136688 40137009 -122462921 - MLT1A1 LTR MaLR 0 365 5 1637 137 35 3 chrX 40138075 40138525 -122461405 + L1M2 LINE L1 5007 5468 -743 562 186 24 60 chrX 40138798 40138965 -122460965 + MLT1H LTR MaLR 1 161 -388 332 298 119 35 chrX 40139120 40139439 -122460491 + MLT1J1 LTR MaLR 78 423 -23 742 196 4 122 chrX 40139454 40139684 -122460246 + MER63A DNA MER1_type 8 210 0 293 234 16 16 chrX 40139895 40139959 -122459971 + L2 LINE L2 3205 3268 -4 238 123 0 46 chrX 40140097 40140162 -122459768 - L1MCa LINE L1 -4359 2067 2006 234 139 0 0 chrX 40140334 40140370 -122459560 + MIR SINE MIR 114 149 -59 2062 29 50 0 chrX 40140587 40140828 -122459102 - AluY SINE Alu -9 302 50 2257 108 0 0 chrX 40140966 40141263 -122458667 + AluSx SINE Alu 1 297 -15 2125 118 0 13 chrX 40141743 40142049 -122457881 + AluSx SINE Alu 1 302 -10 675 168 0 133 chrX 40142195 40142391 -122457539 - L1MB8 LINE L1 -78 6100 5931 * 3015 137 29 129 chrX 40142379 40143604 -122456326 - L1MA8 LINE L1 -210 6081 4982 2318 108 31 0 chrX 40143619 40143971 -122455959 - L1PA16 LINE L1 -2 6164 5802 1164 114 10 10 chrX 40143971 40144164 -122455766 + L1PA16 LINE L1 5621 5813 -353 * 1999 145 3 6 chrX 40144160 40144511 -122455419 - L1MA8 LINE L1 -1148 4998 4649 * 3799 121 10 80 chrX 40144510 40145323 -122454607 + L1MA8 LINE L1 3881 4636 -1510 1647 179 28 3 chrX 40145348 40145633 -122454297 - AluSx SINE Alu -20 292 1 2616 246 97 96 chrX 40146892 40147230 -122452700 + HAL1 LINE L1 99 435 -2072 2396 33 40 23 chrX 40147230 40147532 -122452398 - AluY SINE Alu -4 307 1 2616 246 97 96 chrX 40147532 40148678 -122451252 + HAL1 LINE L1 435 1589 -918 2278 101 3 7 chrX 40148678 40148985 -122450945 + AluSx SINE Alu 1 306 -6 2616 246 97 96 chrX 40148985 40149494 -122450436 + HAL1 LINE L1 1589 2096 -411 601 24 24 0 chrX 40149526 40149609 -122450321 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 308 282 0 0 chrX 40149614 40149717 -122450213 + L1ME1 LINE L1 4581 4683 -1463 1022 247 46 27 chrX 40151594 40151966 -122447964 + L1ME1 LINE L1 4677 5055 -1091 2539 155 32 4 chrX 40152018 40152522 -122447408 + L1MA7 LINE L1 5773 6290 -1 1561 138 109 37 chrX 40152597 40152946 -122446984 + THE1C LTR MaLR 1 374 -1 4003 109 15 63 chrX 40152950 40153668 -122446262 + THE1C-int LTR MaLR 4 687 -893 4279 62 7 0 chrX 40153696 40154260 -122445670 - HERVL LTR ERVL -2935 2719 2152 385 143 0 14 chrX 40154260 40154330 -122445600 + MSTA LTR MaLR 360 428 0 2514 74 0 0 chrX 40154355 40154665 -122445265 + AluY SINE Alu 2 311 0 2289 194 60 30 chrX 40154666 40155327 -122444603 + L1ME1 LINE L1 5196 5880 -286 2448 93 3 0 chrX 40155327 40155637 -122444293 + AluSp SINE Alu 1 311 -2 2289 194 60 30 chrX 40155637 40155697 -122444233 + L1ME1 LINE L1 5880 5937 -229 724 103 0 9 chrX 40155701 40155808 -122444122 - HERVL LTR ERVL -3391 2263 2158 677 212 22 22 chrX 40155876 40156055 -122443875 + L1ME1 LINE L1 5983 6161 -5 2207 258 97 30 chrX 40156061 40156897 -122443033 + L1ME LINE L1 3836 4829 -1317 1661 137 103 4 chrX 40156897 40157159 -122442771 + AluJo SINE Alu 1 288 -24 2207 258 97 30 chrX 40157159 40157707 -122442223 + L1ME LINE L1 4829 5339 -807 410 276 0 58 chrX 40157707 40157863 -122442067 + L1ME3 LINE L1 5928 6074 -88 358 258 95 0 chrX 40157936 40158154 -122441776 + L1ME LINE L1 5319 5558 -604 405 0 0 0 chrX 40158164 40158209 -122441721 + (TG)n Simple_repeat Simple_repeat 2 46 0 267 317 84 28 chrX 40158209 40158458 -122441472 + L1ME LINE L1 5615 5877 -287 1786 210 52 38 chrX 40158683 40159157 -122440773 + L1MC4a LINE L1 7267 7751 -57 3090 159 46 11 chrX 40159157 40159767 -122440163 - L1MB7 LINE L1 -17 6167 5537 1786 210 52 38 chrX 40159767 40159826 -122440104 + L1MC4a LINE L1 7751 7808 0 1673 249 89 8 chrX 40159992 40160506 -122439424 - MER21B LTR ERV1 -57 806 251 1288 211 26 73 chrX 40160507 40160890 -122439040 + MLT1A1 LTR MaLR 1 365 0 3835 202 101 143 chrX 40160890 40161418 -122438512 + MLT1A1-int LTR MaLR 1 550 -1185 1980 144 0 7 chrX 40161418 40161723 -122438207 + AluJb SINE Alu 1 303 -9 3835 202 101 143 chrX 40161723 40161891 -122438039 + MLT1A1-int LTR MaLR 550 724 -1011 1275 136 11 0 chrX 40161891 40162100 -122437830 + AluSg/x SINE Alu 96 306 0 3835 202 101 143 chrX 40162100 40163024 -122436906 + MLT1A1-int LTR MaLR 724 1730 -5 1270 219 27 59 chrX 40163031 40163406 -122436524 + MLT1A1 LTR MaLR 3 365 0 784 169 13 133 chrX 40163425 40163650 -122436280 - MER21B LTR ERV1 -646 217 20 310 295 0 0 chrX 40163670 40163748 -122436182 - MER21B LTR ERV1 -773 90 13 705 166 0 83 chrX 40163932 40164077 -122435853 + FLAM_C SINE Alu 1 133 0 318 106 0 0 chrX 40165621 40165639 -122434291 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 318 106 0 0 chrX 40165639 40165686 -122434244 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 296 24 24 0 chrX 40165928 40165969 -122433961 + (TC)n Simple_repeat Simple_repeat 2 43 0 426 20 0 0 chrX 40165970 40166021 -122433909 + (TG)n Simple_repeat Simple_repeat 2 52 0 338 298 8 57 chrX 40166338 40166462 -122433468 - L2 LINE L2 0 3313 3196 602 288 123 48 chrX 40166895 40167270 -122432660 - L2 LINE L2 -9 3304 2902 927 123 19 80 chrX 40169358 40169570 -122430360 + L1MA10 LINE L1 6129 6327 -7 267 357 70 35 chrX 40171054 40171197 -122428733 + L2 LINE L2 3125 3272 0 414 0 0 0 chrX 40171855 40171901 -122428029 + (CA)n Simple_repeat Simple_repeat 2 47 0 351 0 0 0 chrX 40173042 40173081 -122426849 + (TG)n Simple_repeat Simple_repeat 1 39 0 1278 85 0 40 chrX 40173942 40174017 -122425913 + L1PB1 LINE L1 5960 6036 -115 2427 76 3 0 chrX 40174017 40174318 -122425612 + AluY SINE Alu 1 302 -9 1278 85 0 40 chrX 40174318 40174441 -122425489 + L1PB1 LINE L1 6036 6150 -1 210 71 0 0 chrX 40174472 40174500 -122425430 + (A)n Simple_repeat Simple_repeat 1 28 0 293 280 28 37 chrX 40175272 40175379 -122424551 + MIR SINE MIR 80 185 -77 1217 115 46 9 chrX 40175407 40175624 -122424306 + L1MA9 LINE L1 6086 6310 -2 655 225 197 13 chrX 40176075 40176837 -122423093 - L1ME1 LINE L1 0 6166 5288 524 302 97 67 chrX 40179391 40179882 -122420048 + L2 LINE L2 2782 3306 -7 30 27 0 0 chrX 40180700 40180737 -122419193 + AT_rich Low_complexity Low_complexity 1 37 0 529 119 12 0 chrX 40180792 40180876 -122419054 - HY3 scRNA scRNA -6 95 11 700 266 58 19 chrX 40182116 40182323 -122417607 + MIR SINE MIR 33 247 -15 191 292 219 31 chrX 40182458 40182650 -122417280 - MIR SINE MIR -16 246 19 2225 104 27 0 chrX 40183282 40183402 -122416528 + AluSg SINE Alu 1 116 -194 184 30 61 0 chrX 40183402 40183435 -122416495 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2225 104 27 0 chrX 40183435 40183612 -122416318 + AluSg SINE Alu 116 306 -4 275 270 30 0 chrX 40184340 40184440 -122415490 - L2 LINE L2 -136 3177 3075 338 290 138 48 chrX 40185075 40185306 -122414624 + MIR SINE MIR 10 261 -1 997 204 51 0 chrX 40185351 40185586 -122414344 - MER46C DNA MER2_type -66 272 26 21 36 0 0 chrX 40187764 40187792 -122412138 + AT_rich Low_complexity Low_complexity 1 28 0 222 261 17 16 chrX 40191813 40191932 -122407998 + MIR SINE MIR 20 228 -34 299 336 26 0 chrX 40193126 40193239 -122406691 + MIR SINE MIR 34 149 -113 1705 162 37 4 chrX 40193374 40193493 -122406437 + AluJo SINE Alu 1 115 -197 306 0 0 0 chrX 40193493 40193527 -122406403 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1705 162 37 4 chrX 40193527 40193678 -122406252 + AluJo SINE Alu 115 280 -32 230 0 87 22 chrX 40193679 40193725 -122406205 + A-rich Low_complexity Low_complexity 2 50 0 207 278 0 42 chrX 40194188 40194260 -122405670 + G-rich Low_complexity Low_complexity 4 72 0 207 175 0 0 chrX 40196210 40196250 -122403680 + (TGG)n Simple_repeat Simple_repeat 1 40 0 489 233 9 0 chrX 40197289 40197405 -122402525 + L1MD2 LINE L1 6227 6343 -16 1178 190 289 33 chrX 40197721 40198130 -122401800 - HsTC2c DNA Tc2 0 729 226 2064 276 151 42 chrX 40198189 40199616 -122400314 - L2 LINE L2 0 3313 1716 283 339 191 6 chrX 40199639 40199807 -122400123 - L2 LINE L2 -1702 1612 1414 609 257 24 44 chrX 40200572 40200778 -122399152 + MIR SINE MIR 3 204 -58 25 65 0 0 chrX 40200947 40200993 -122398937 + AT_rich Low_complexity Low_complexity 1 46 0 321 295 62 39 chrX 40201225 40201354 -122398576 - MIR3 SINE MIR -66 142 11 226 297 59 20 chrX 40201771 40201872 -122398058 - L2 LINE L2 0 3313 3209 236 218 18 0 chrX 40202688 40202743 -122397187 - Charlie8 DNA MER1_type -2227 190 135 221 313 16 0 chrX 40202859 40202923 -122397007 + L2 LINE L2 3249 3313 0 2014 128 0 0 chrX 40204127 40204401 -122395529 + AluSx SINE Alu 24 297 -15 352 183 19 39 chrX 40204548 40204652 -122395278 + L1MB2 LINE L1 6070 6171 0 289 291 24 39 chrX 40205413 40205540 -122394390 + L2 LINE L2 3182 3306 -7 384 264 33 77 chrX 40206020 40206202 -122393728 + L3b LINE CR1 1223 1396 -187 573 214 12 69 chrX 40206481 40206654 -122393276 - MER20 DNA MER1_type -56 163 1 356 385 42 35 chrX 40209027 40209313 -122390617 + L1MDa LINE L1 1 288 -6252 2196 216 126 27 chrX 40209833 40210767 -122389163 + L1MDa LINE L1 956 1935 -4605 1282 258 125 31 chrX 40210768 40211525 -122388405 + L1MDa LINE L1 2259 3060 -3480 1899 115 51 63 chrX 40211525 40211856 -122388074 + MER1B DNA MER1_type 1 327 -12 1749 218 57 32 chrX 40211856 40212100 -122387830 + L1MDa LINE L1 3101 3338 -3202 2378 107 0 0 chrX 40212100 40212409 -122387521 + AluSx SINE Alu 1 309 -3 1749 218 57 32 chrX 40212409 40212780 -122387150 + L1MDa LINE L1 3338 3731 -2809 818 243 81 21 chrX 40212809 40213143 -122386787 - L1M4 LINE L1 -2392 3754 3401 254 258 16 0 chrX 40213947 40214009 -122385921 - MIR3 SINE MIR -23 185 123 335 219 27 0 chrX 40215027 40215100 -122384830 + L2 LINE L2 3232 3306 -7 333 270 141 31 chrX 40215269 40215432 -122384498 + MIR SINE MIR 58 238 -24 186 330 32 53 chrX 40216256 40216350 -122383580 + MIR3 SINE MIR 69 160 -48 268 204 30 23 chrX 40218402 40218534 -122381396 + GA-rich Low_complexity Low_complexity 1 133 0 1604 136 62 49 chrX 40219943 40220192 -122379738 + L1MD3 LINE L1 7684 7939 -56 2405 63 3 47 chrX 40220192 40220511 -122379419 - AluSp SINE Alu -8 305 1 1604 136 62 49 chrX 40220511 40220569 -122379361 + L1MD3 LINE L1 7939 7995 0 838 136 0 50 chrX 40220625 40220765 -122379165 + FLAM_C SINE Alu 1 133 0 1952 103 8 0 chrX 40224397 40224660 -122375270 + AluSx SINE Alu 38 302 -10 742 128 37 0 chrX 40224660 40224764 -122375166 + AluJo SINE Alu 29 136 -176 27 81 0 0 chrX 40224798 40224860 -122375070 + AT_rich Low_complexity Low_complexity 1 62 0 2349 150 40 2 chrX 40226568 40226968 -122372962 + L1MB2 LINE L1 5755 6169 -2 384 22 0 0 chrX 40227956 40228001 -122371929 + (CA)n Simple_repeat Simple_repeat 2 46 0 1762 147 0 33 chrX 40228573 40228879 -122371051 + AluJo SINE Alu 1 296 -16 219 238 0 0 chrX 40229881 40229923 -122370007 + polypurine Low_complexity Low_complexity 4 45 0 2356 254 58 44 chrX 40230210 40230657 -122369273 + L2 LINE L2 1042 1481 -1833 861 291 78 26 chrX 40230657 40231042 -122368888 - MLT1I LTR MaLR -2 407 3 2356 254 58 44 chrX 40231042 40231253 -122368677 + L2 LINE L2 1481 1716 -1598 1733 184 0 0 chrX 40231253 40231572 -122368358 + AluJo SINE Alu 1 319 0 2356 254 58 44 chrX 40231572 40231711 -122368219 + L2 LINE L2 1716 1852 -1462 1646 108 21 21 chrX 40231723 40231963 -122367967 - MSTA LTR MaLR 0 428 189 4231 85 9 0 chrX 40231963 40232507 -122367423 - L1PA8 LINE L1 -1 6171 5623 3289 80 0 12 chrX 40232507 40233066 -122366864 + L1PA8A LINE L1 4930 5479 -652 2131 95 18 11 chrX 40233066 40233370 -122366560 + AluSx SINE Alu 1 312 0 3289 80 0 12 chrX 40233370 40233568 -122366362 + L1PA8A LINE L1 5479 5678 -453 1388 108 31 0 chrX 40233568 40233763 -122366167 - MSTA LTR MaLR -227 201 1 1012 306 73 23 chrX 40233765 40234206 -122365724 + L2 LINE L2 1859 2321 -993 232 353 12 0 chrX 40234242 40234327 -122365603 - MIR3 SINE MIR -36 172 87 1816 163 0 10 chrX 40234926 40235235 -122364695 + AluSx SINE Alu 1 306 0 218 342 0 13 chrX 40235423 40235502 -122364428 + MIR3 SINE MIR 103 180 -28 1664 149 60 26 chrX 40235552 40235854 -122364076 + AluJo SINE Alu 1 312 0 180 0 0 0 chrX 40235999 40236019 -122363911 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1668 148 10 64 chrX 40236022 40236320 -122363610 - AluJb SINE Alu -30 282 1 1634 258 161 55 chrX 40236349 40236779 -122363151 + L1M4 LINE L1 2965 3348 -2798 2300 88 3 0 chrX 40236779 40237073 -122362857 + AluSg SINE Alu 1 295 -15 1634 258 161 55 chrX 40237073 40237084 -122362846 + L1M4 LINE L1 3348 3356 -2790 2205 116 20 0 chrX 40237084 40237385 -122362545 + AluSx SINE Alu 1 307 -5 1634 258 161 55 chrX 40237385 40237716 -122362214 + L1M4 LINE L1 3356 3651 -2495 2241 123 0 0 chrX 40237716 40238018 -122361912 - AluSx SINE Alu -10 302 1 1634 258 161 55 chrX 40238018 40238581 -122361349 + L1M4 LINE L1 3651 4443 -1703 291 261 125 45 chrX 40238677 40238853 -122361077 + L1ME3A LINE L1 5927 6116 -54 2516 50 0 3 chrX 40238900 40239198 -122360732 - AluY SINE Alu -14 297 1 223 382 59 0 chrX 40239376 40239499 -122360431 + MIR SINE MIR 17 147 -61 183 344 172 7 chrX 40240100 40240251 -122359679 + MIR SINE MIR 1 176 -86 1940 116 38 27 chrX 40240579 40240872 -122359058 + AluSx SINE Alu 1 296 -16 1164 231 0 22 chrX 40241243 40241472 -122358458 - MER58A DNA MER1_type 0 224 1 757 181 144 12 chrX 40241480 40241640 -122358290 - MER5A DNA MER1_type 0 189 9 416 291 99 14 chrX 40241656 40241689 -122358241 + MER5B DNA MER1_type 17 46 -132 240 35 0 0 chrX 40241689 40241718 -122358212 + (CA)n Simple_repeat Simple_repeat 2 30 0 416 291 99 14 chrX 40241718 40241825 -122358105 + MER5B DNA MER1_type 46 169 -9 2451 90 0 0 chrX 40242107 40242419 -122357511 + AluSx SINE Alu 1 312 0 787 174 133 31 chrX 40244236 40244432 -122355498 - MER58A DNA MER1_type 0 224 9 2381 77 0 0 chrX 40244497 40244783 -122355147 + AluSg SINE Alu 1 286 -24 2635 107 79 60 chrX 40244952 40245372 -122354558 - MSTC LTR MaLR 0 428 1 1957 147 3 0 chrX 40245621 40245913 -122354017 - AluJb SINE Alu -19 293 1 252 248 238 0 chrX 40246061 40246162 -122353768 - MER5A DNA MER1_type 0 189 65 226 268 62 62 chrX 40246673 40246785 -122353145 + MLT1H1 LTR MaLR 37 148 -407 268 250 238 12 chrX 40246948 40247116 -122352814 + L1ME4a LINE L1 5843 6048 -73 1705 100 4 0 chrX 40247191 40247421 -122352509 - AluSq SINE Alu -11 302 72 185 257 100 14 chrX 40247464 40247534 -122352396 + MIR SINE MIR 79 154 -108 2012 113 0 53 chrX 40247538 40247856 -122352074 + AluSq SINE Alu 11 311 -2 772 109 40 103 chrX 40247961 40248135 -122351795 - MLT1E2 LTR MaLR -446 180 18 2505 149 51 33 chrX 40248150 40248599 -122351331 - MSTB2 LTR MaLR 0 457 1 27 0 0 0 chrX 40248636 40248663 -122351267 + AT_rich Low_complexity Low_complexity 1 27 0 210 382 0 9 chrX 40249427 40249537 -122350393 + GA-rich Low_complexity Low_complexity 3 111 0 212 371 46 7 chrX 40249706 40249857 -122350073 - L2 LINE L2 -1637 1677 1521 258 255 160 9 chrX 40250093 40250199 -122349731 + MIR3 SINE MIR 81 202 -6 352 216 78 85 chrX 40250457 40250610 -122349320 - MIR SINE MIR -79 183 32 470 257 97 80 chrX 40252188 40252904 -122347026 + L1ME LINE L1 534 1213 -4867 2171 125 70 9 chrX 40253124 40253467 -122346463 + MER47A DNA MER2_type 1 364 -2 4100 95 39 47 chrX 40253543 40253981 -122345949 + L1MA3 LINE L1 5666 6106 -199 2027 130 3 16 chrX 40253981 40254150 -122345780 - AluSx SINE Alu -9 303 138 2086 78 0 19 chrX 40254150 40254418 -122345512 - AluY SINE Alu -9 302 40 2027 130 3 16 chrX 40254418 40254555 -122345375 - AluSx SINE Alu -174 138 1 4100 95 39 47 chrX 40254555 40254567 -122345363 + L1MA3 LINE L1 6106 6117 -188 1799 148 3 30 chrX 40254567 40254872 -122345058 - AluJb SINE Alu -15 297 1 4100 95 39 47 chrX 40254872 40255065 -122344865 + L1MA3 LINE L1 6117 6305 0 2023 128 7 10 chrX 40255205 40255511 -122344419 + AluSx SINE Alu 1 305 -7 2365 106 0 3 chrX 40255511 40255822 -122344108 + AluSg SINE Alu 1 310 0 346 289 23 81 chrX 40255836 40255883 -122344047 - MIR3 SINE MIR -16 192 144 2295 73 3 22 chrX 40255883 40256199 -122343731 + AluSg SINE Alu 1 310 0 346 289 23 81 chrX 40256199 40256324 -122343606 - MIR3 SINE MIR -64 144 30 27 49 0 0 chrX 40256389 40256430 -122343500 + AT_rich Low_complexity Low_complexity 1 41 0 519 17 0 0 chrX 40256562 40256622 -122343308 + (CA)n Simple_repeat Simple_repeat 2 61 0 2232 109 0 16 chrX 40256825 40257128 -122342802 + AluSg SINE Alu 1 298 -12 1646 133 126 0 chrX 40257722 40257985 -122341945 + AluSx SINE Alu 1 296 -16 2234 101 0 32 chrX 40257989 40258305 -122341625 + AluSx SINE Alu 1 306 -6 26 0 0 0 chrX 40258307 40258333 -122341597 + AT_rich Low_complexity Low_complexity 1 26 0 222 91 0 0 chrX 40258600 40258633 -122341297 + (TC)n Simple_repeat Simple_repeat 1 33 0 2357 89 3 16 chrX 40258682 40258996 -122340934 - AluY SINE Alu -1 310 1 2215 110 3 0 chrX 40259104 40259404 -122340526 - AluSg SINE Alu -9 301 1 2045 213 47 40 chrX 40260891 40261421 -122338509 + MLT1H LTR MaLR 1 534 -15 184 349 12 36 chrX 40261450 40261533 -122338397 - L2 LINE L2 -1 3271 3191 514 329 82 64 chrX 40261612 40262419 -122337511 - L2 LINE L2 -221 3051 2230 1345 204 42 13 chrX 40262975 40263431 -122336499 + L1MB3 LINE L1 5078 5554 -626 1315 197 59 4 chrX 40263431 40263685 -122336245 + AluJo SINE Alu 13 280 -32 2229 108 3 0 chrX 40263685 40263990 -122335940 - AluSx SINE Alu -6 306 1 3152 149 39 14 chrX 40264017 40264541 -122335389 + L1MB3 LINE L1 5595 6136 -47 1906 129 61 4 chrX 40264541 40264820 -122335110 + AluSx SINE Alu 1 295 -17 3152 149 39 14 chrX 40264820 40264867 -122335063 + L1MB3 LINE L1 6136 6180 -3 2392 189 39 82 chrX 40264879 40265598 -122334332 + L1ME3 LINE L1 5426 6113 -49 762 120 0 0 chrX 40265598 40265740 -122334190 - AluSg/x SINE Alu 0 330 189 1723 170 0 52 chrX 40266139 40266468 -122333462 - AluJb SINE Alu 0 312 1 2097 102 7 0 chrX 40266738 40267047 -122332883 + AluSx SINE Alu 9 312 0 1292 194 61 7 chrX 40267465 40267759 -122332171 + AluJo SINE Alu 1 310 -2 2666 30 0 0 chrX 40267759 40268054 -122331876 - AluY SINE Alu -16 295 1 22 0 0 0 chrX 40268054 40268076 -122331854 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chrX 40269257 40269298 -122330632 + (TG)n Simple_repeat Simple_repeat 1 41 0 399 68 0 0 chrX 40269298 40269357 -122330573 + (GA)n Simple_repeat Simple_repeat 2 60 0 319 271 101 110 chrX 40270268 40270894 -122329036 + L1M2 LINE L1 815 1384 -5465 22 0 0 0 chrX 40273378 40273400 -122326530 + AT_rich Low_complexity Low_complexity 1 22 0 244 136 51 0 chrX 40274012 40274071 -122325859 + GA-rich Low_complexity Low_complexity 1 62 0 1504 141 144 4 chrX 40274123 40274379 -122325551 + AluSx SINE Alu 1 292 -10 1620 191 115 28 chrX 40274564 40274743 -122325187 + MLT1C LTR MaLR 6 168 -299 369 0 0 0 chrX 40274743 40274784 -122325146 + (CA)n Simple_repeat Simple_repeat 2 42 0 1620 191 115 28 chrX 40274784 40275029 -122324901 + MLT1C LTR MaLR 168 467 0 2237 109 3 0 chrX 40275130 40275423 -122324507 + AluSx SINE Alu 1 294 -18 185 235 106 82 chrX 40275464 40275549 -122324381 - L3 LINE CR1 0 1577 1491 2188 118 0 7 chrX 40275574 40275879 -122324051 - AluSx SINE Alu -9 303 1 2151 114 42 36 chrX 40276214 40276547 -122323383 - MER1B DNA MER1_type 0 337 3 1631 154 91 51 chrX 40276680 40277031 -122322899 - MLT1A1 LTR MaLR 0 365 1 2105 132 0 0 chrX 40277895 40278190 -122321740 + AluSx SINE Alu 2 296 -16 618 277 20 15 chrX 40278560 40278762 -122321168 + L2 LINE L2 3109 3311 -2 921 143 0 0 chrX 40278840 40278973 -122320957 + FLAM_C SINE Alu 1 133 0 800 203 40 0 chrX 40279955 40280124 -122319806 - MER45A DNA AcHobo 0 178 1 462 319 0 9 chrX 40280124 40280237 -122319693 - MER5B DNA MER1_type -62 116 5 5257 75 5 3 chrX 40280871 40281521 -122318409 + L1PA11 LINE L1 5524 6174 0 341 248 7 95 chrX 40282032 40282169 -122317761 + LTR16A1 LTR ERVL 1 125 -332 426 281 23 9 chrX 40282260 40282512 -122317418 + LTR16A1 LTR ERVL 166 457 0 2264 91 3 0 chrX 40282959 40283245 -122316685 + AluSp SINE Alu 1 287 -26 1412 268 75 27 chrX 40283271 40283749 -122316181 - LTR33 LTR ERVL -2 519 19 2699 153 19 16 chrX 40283796 40284221 -122315709 + MSTB LTR MaLR 1 426 0 2366 109 0 0 chrX 40284974 40285286 -122314644 + AluSx SINE Alu 1 312 0 4839 153 23 38 chrX 40285466 40286330 -122313600 + MER6 DNA MER2_type 2 852 -13 206 329 0 25 chrX 40286680 40286759 -122313171 - L2 LINE L2 0 3272 3196 1983 170 21 128 chrX 40287052 40287576 -122312354 + MLT1D LTR MaLR 1 468 -37 647 273 35 0 chrX 40287715 40287887 -122312043 + MLT1G LTR MaLR 1 178 -412 476 171 108 27 chrX 40288721 40288832 -122311098 - L1MC4 LINE L1 -143 7899 7780 1884 162 0 16 chrX 40289549 40289717 -122310213 - AluJb SINE Alu -8 304 142 2043 134 0 10 chrX 40289717 40290023 -122309907 - AluJb SINE Alu -9 303 1 1884 162 0 16 chrX 40290023 40290163 -122309767 - AluJb SINE Alu -170 142 1 22 0 0 0 chrX 40290242 40290264 -122309666 + AT_rich Low_complexity Low_complexity 1 22 0 1542 90 19 0 chrX 40290593 40290804 -122309126 - Tigger1 DNA MER2_type 0 2418 2204 796 191 0 21 chrX 40290805 40290946 -122308984 - Tigger1 DNA MER2_type -2280 138 1 1310 233 46 11 chrX 40290947 40291316 -122308614 - L1M4 LINE L1 -1808 4338 3957 537 271 59 49 chrX 40291812 40292015 -122307915 + MIR3 SINE MIR 4 208 0 2905 218 28 7 chrX 40292683 40293253 -122306677 + MLT1G LTR MaLR 1 582 -8 509 273 0 38 chrX 40293632 40293764 -122306166 + MIR SINE MIR 33 159 -103 430 238 133 20 chrX 40294218 40294369 -122305561 + MIR SINE MIR 20 187 -75 2161 104 7 3 chrX 40294669 40294956 -122304974 + AluSp SINE Alu 1 288 -25 357 24 0 0 chrX 40294956 40294998 -122304932 + (CA)n Simple_repeat Simple_repeat 2 43 0 778 253 108 8 chrX 40294999 40295240 -122304690 + L1ME3 LINE L1 5897 6161 -1 342 0 0 0 chrX 40295835 40295873 -122304057 + (TG)n Simple_repeat Simple_repeat 2 39 0 2097 132 0 0 chrX 40296558 40296854 -122303076 - AluJb SINE Alu -16 296 1 938 121 0 8 chrX 40296888 40297020 -122302910 - AluSq SINE Alu -56 257 127 2140 127 3 7 chrX 40297028 40297336 -122302594 - AluSx SINE Alu -5 307 1 230 349 66 0 chrX 40297383 40297489 -122302441 + L2 LINE L2 3201 3313 0 2597 40 0 0 chrX 40298210 40298506 -122301424 - AluY SINE Alu -15 296 1 25 0 0 0 chrX 40299021 40299046 -122300884 + AT_rich Low_complexity Low_complexity 1 25 0 2523 157 25 54 chrX 40299595 40300040 -122299890 + MSTB1 LTR MaLR 1 432 0 180 0 0 0 chrX 40300651 40300671 -122299259 + (A)n Simple_repeat Simple_repeat 1 20 0 2311 86 21 0 chrX 40300672 40300963 -122298967 + AluSx SINE Alu 1 297 -15 25 31 0 0 chrX 40300963 40300995 -122298935 + AT_rich Low_complexity Low_complexity 1 32 0 2300 162 30 10 chrX 40301005 40301400 -122298530 + MER65A LTR ERV1 42 444 -1 293 298 16 16 chrX 40301407 40301531 -122298399 + A-rich Low_complexity Low_complexity 2 125 0 494 268 24 8 chrX 40302355 40302482 -122297448 + MER94 DNA DNA 1 129 -5 180 111 0 0 chrX 40302529 40302556 -122297374 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1922 155 0 10 chrX 40302592 40302889 -122297041 + AluJb SINE Alu 1 294 -18 1410 181 88 78 chrX 40303582 40303951 -122295979 + MLT2D LTR ERVL 1 376 -38 607 69 20 10 chrX 40303951 40304053 -122295877 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 1410 181 88 78 chrX 40304053 40304091 -122295839 + MLT2D LTR ERVL 376 412 -2 1941 152 13 22 chrX 40305486 40305801 -122294129 + AluJo SINE Alu 1 312 0 2200 103 3 7 chrX 40305830 40306131 -122293799 + AluSx SINE Alu 1 300 -12 2147 134 13 0 chrX 40306255 40306561 -122293369 - AluSx SINE Alu 0 312 3 540 266 57 13 chrX 40306596 40306754 -122293176 + MIR SINE MIR 11 175 -87 1314 183 18 53 chrX 40306823 40307108 -122292822 - LTR16C LTR ERVL -6 485 211 215 333 0 0 chrX 40307116 40307185 -122292745 - L2 LINE L2 -60 3253 3185 207 319 0 42 chrX 40307359 40307431 -122292499 + L2 LINE L2 2997 3065 -248 200 257 54 0 chrX 40307558 40307632 -122292298 + L2 LINE L2 3193 3270 -2 2030 116 3 10 chrX 40308007 40308300 -122291630 - AluJb SINE Alu -21 291 1 1392 194 45 36 chrX 40308610 40308967 -122290963 - Tigger7 DNA MER2_type 0 2491 1 3326 130 56 30 chrX 40308969 40309330 -122290600 + Tigger6a DNA MER2_type 420 803 -794 2167 95 0 0 chrX 40309330 40309604 -122290326 - AluSx SINE Alu -15 297 24 3326 130 56 30 chrX 40309604 40309833 -122290097 + Tigger6a DNA MER2_type 803 1025 -58 201 108 0 0 chrX 40310136 40310173 -122289757 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1385 158 130 0 chrX 40310176 40310422 -122289508 - AluJo SINE Alu -31 281 4 399 160 40 13 chrX 40310654 40310729 -122289201 + MER92B LTR ERV1 512 588 -48 24 0 0 0 chrX 40311639 40311663 -122288267 + AT_rich Low_complexity Low_complexity 1 24 0 2012 110 71 0 chrX 40311670 40311952 -122287978 + AluSp SINE Alu 1 302 -11 314 89 0 0 chrX 40311952 40311997 -122287933 - L1MB2 LINE L1 -9 6162 6118 881 196 5 22 chrX 40312077 40312261 -122287669 - L1MB2 LINE L1 -38 6133 5953 390 235 76 68 chrX 40312261 40312320 -122287610 + MIR SINE MIR 130 187 -75 1962 165 51 11 chrX 40312320 40312671 -122287259 + MLT1A1 LTR MaLR 1 365 0 390 235 76 68 chrX 40312671 40312743 -122287187 + MIR SINE MIR 187 262 0 402 249 53 35 chrX 40313083 40313252 -122286678 + Charlie8 DNA MER1_type 40 211 -2206 2301 223 15 47 chrX 40313484 40313513 -122286417 - LTR40a LTR ERVL -2 517 489 3020 103 5 0 chrX 40313513 40313922 -122286008 - L1PA12 LINE L1 0 6168 5758 2301 223 15 47 chrX 40313922 40314220 -122285710 - LTR40a LTR ERVL -30 489 211 1606 106 13 46 chrX 40314220 40314457 -122285473 - MER30 DNA MER1_type 0 230 2 2301 223 15 47 chrX 40314457 40314662 -122285268 - LTR40a LTR ERVL -308 211 1 2512 200 77 107 chrX 40314762 40315018 -122284912 - MER21B LTR ERV1 -63 800 538 2101 103 21 7 chrX 40315018 40315300 -122284630 + AluSx SINE Alu 1 286 -26 2512 200 77 107 chrX 40315300 40315849 -122284081 - MER21B LTR ERV1 -325 538 19 334 226 0 0 chrX 40315873 40315935 -122283995 - MER21B LTR ERV1 -776 87 26 1703 167 42 0 chrX 40315935 40316223 -122283707 - AluSx SINE Alu -12 300 1 570 313 63 56 chrX 40316304 40316973 -122282957 - L2 LINE L2 0 3272 2376 828 54 0 1 chrX 40318376 40318493 -122281437 - L1P4 LINE L1 -483 5683 5568 2099 103 7 14 chrX 40318936 40319228 -122280702 - AluSx SINE Alu -22 290 1 801 151 0 0 chrX 40319606 40319725 -122280205 - FLAM_C SINE Alu -24 119 1 474 204 49 56 chrX 40320498 40320640 -122279290 + MIR3 SINE MIR 11 151 -57 231 36 0 0 chrX 40320806 40320834 -122279096 + (TC)n Simple_repeat Simple_repeat 1 28 0 2208 104 20 0 chrX 40320940 40321239 -122278691 - AluSc SINE Alu -4 305 1 3278 118 21 58 chrX 40321318 40321727 -122278203 + L1MA7 LINE L1 5693 6073 -218 2101 104 7 11 chrX 40321727 40322014 -122277916 + AluSg SINE Alu 1 286 -24 3278 118 21 58 chrX 40322014 40322220 -122277710 + L1MA7 LINE L1 6073 6285 -6 1097 247 124 29 chrX 40322503 40322953 -122276977 + LTR33 LTR ERVL 29 521 0 455 264 119 0 chrX 40322953 40323186 -122276744 - LTR33A LTR ERVL -11 512 252 335 280 22 49 chrX 40323393 40323555 -122276375 + MIR SINE MIR 57 214 -48 571 228 35 0 chrX 40324279 40324393 -122275537 + MER5B DNA MER1_type 1 118 -60 5602 103 12 5 chrX 40324398 40325250 -122274680 - L1PA15 LINE L1 -6 6159 5302 319 164 0 33 chrX 40325250 40325311 -122274619 + MER5B DNA MER1_type 115 173 -5 268 302 54 23 chrX 40325647 40325776 -122274154 - MIR3 SINE MIR -73 135 3 2205 101 30 0 chrX 40326190 40326487 -122273443 - AluSx SINE Alu -6 306 1 556 125 194 78 chrX 40326757 40327011 -122272919 - MER4C LTR ERV1 -18 447 167 307 176 15 114 chrX 40327020 40327151 -122272779 - MER4A LTR ERV1 -322 342 225 338 189 126 53 chrX 40327281 40327376 -122272554 - MER5A DNA MER1_type -1 188 87 2071 90 29 26 chrX 40327396 40327707 -122272223 - AluSx SINE Alu 0 312 1 625 74 16 41 chrX 40327716 40327837 -122272093 + (TTTC)n Simple_repeat Simple_repeat 4 121 0 2258 88 13 3 chrX 40327846 40328153 -122271777 - AluSx SINE Alu -2 310 1 1463 204 52 36 chrX 40328290 40328763 -122271167 - MER74B LTR ERVL 0 622 55 2518 20 7 20 chrX 40328775 40329076 -122270854 + AluY SINE Alu 1 297 -14 1547 149 84 8 chrX 40329393 40329690 -122270240 - AluJo SINE Alu 0 317 1 23 33 0 0 chrX 40330663 40330693 -122269237 + AT_rich Low_complexity Low_complexity 1 30 0 193 314 118 0 chrX 40330969 40331071 -122268859 + L3 LINE CR1 1301 1414 -163 528 305 138 5 chrX 40331155 40331358 -122268572 - MIR SINE MIR -13 249 20 357 107 18 0 chrX 40331883 40331939 -122267991 + Tigger2a DNA MER2_type 1 57 -377 919 200 0 0 chrX 40333468 40333628 -122266302 - MER8 DNA MER2_type -78 161 2 180 0 0 0 chrX 40333940 40333960 -122265970 + (A)n Simple_repeat Simple_repeat 1 20 0 2161 131 3 0 chrX 40334276 40334574 -122265356 + AluSx SINE Alu 1 299 -13 1622 159 55 17 chrX 40335083 40335373 -122264557 - AluJo SINE Alu -11 301 1 592 165 0 0 chrX 40335630 40335745 -122264185 - L1MA7 LINE L1 -5 6286 6172 1009 283 96 47 chrX 40336196 40336454 -122263476 - L1MC4a LINE L1 -743 5403 5159 2293 97 0 3 chrX 40336454 40336753 -122263177 + AluSp SINE Alu 2 299 -14 1009 283 96 47 chrX 40336753 40337169 -122262761 - L1MC4a LINE L1 -987 5159 4765 2408 93 0 0 chrX 40337169 40337469 -122262461 - AluSg SINE Alu -10 300 1 1009 283 96 47 chrX 40337469 40337901 -122262029 - L1MC4a LINE L1 -1381 4765 4725 2654 33 0 0 chrX 40337901 40338203 -122261727 - AluY SINE Alu -9 302 1 1009 283 96 47 chrX 40338203 40338578 -122261352 - L1MC4a LINE L1 -1421 4725 4370 378 40 0 0 chrX 40338586 40338636 -122261294 + MADE1 DNA Mariner 2 51 -29 34 0 0 0 chrX 40338755 40338789 -122261141 + AT_rich Low_complexity Low_complexity 1 34 0 396 308 46 46 chrX 40338789 40338984 -122260946 - L1ME3A LINE L1 -8 6162 5968 403 266 65 13 chrX 40339054 40339208 -122260722 - L1ME3A LINE L1 -230 5940 5779 1602 171 3 50 chrX 40339379 40339701 -122260229 - AluJo SINE Alu -5 307 1 1664 183 4 7 chrX 40339855 40340129 -122259801 - AluJo SINE Alu -12 300 28 884 142 0 8 chrX 40340527 40340661 -122259269 - FLAM_C SINE Alu -6 137 5 2313 199 14 29 chrX 40340782 40341344 -122258586 - L1ME1 LINE L1 -5 6972 6419 2463 83 0 13 chrX 40341357 40341671 -122258259 - AluSx SINE Alu -2 310 1 13250 124 29 19 chrX 40341673 40343708 -122256222 + Tigger1 DNA MER2_type 180 2240 -178 2603 53 0 0 chrX 40343708 40344010 -122255920 - AluY SINE Alu -9 302 1 13250 124 29 19 chrX 40344010 40344190 -122255740 + Tigger1 DNA MER2_type 2240 2417 -1 1359 182 47 84 chrX 40344190 40344702 -122255228 - L1ME1 LINE L1 -877 6080 5588 1385 87 13 48 chrX 40344722 40344847 -122255083 - L1MA1 LINE L1 -402 5900 5785 2453 84 3 3 chrX 40344847 40345158 -122254772 - AluY SINE Alu 0 311 1 1385 87 13 48 chrX 40345158 40345263 -122254667 - L1MA1 LINE L1 -517 5785 5678 352 94 0 0 chrX 40345263 40345313 -122254617 + L1MA3 LINE L1 6253 6305 0 21 0 0 0 chrX 40345313 40345334 -122254596 + AT_rich Low_complexity Low_complexity 1 21 0 1213 173 28 0 chrX 40345371 40345625 -122254305 + L1 LINE L1 4834 5094 -1052 * 2571 242 54 57 chrX 40345619 40348270 -122251660 - L1ME1 LINE L1 -3179 3778 1029 262 274 18 18 chrX 40348629 40348742 -122251188 - L1ME1 LINE L1 -6656 203 91 2206 92 0 0 chrX 40348965 40349269 -122250661 - AluSx SINE Alu 0 304 1 1792 164 31 0 chrX 40350743 40351036 -122248894 - AluJb SINE Alu -8 304 3 546 228 88 47 chrX 40351148 40351341 -122248589 + MIR SINE MIR 1 201 -61 215 384 53 15 chrX 40351483 40351616 -122248314 - L2 LINE L2 -17 3255 3118 2383 71 3 0 chrX 40351625 40351922 -122248008 - AluSx SINE Alu -14 298 1 588 307 39 0 chrX 40352035 40352188 -122247742 + MIR SINE MIR 20 178 -84 209 271 34 0 chrX 40352830 40352889 -122247041 - L2 LINE L2 -7 3265 3205 1114 53 0 0 chrX 40352906 40353037 -122246893 + AluSg SINE Alu 1 131 -179 1527 161 38 7 chrX 40353157 40353448 -122246482 + MSTB2 LTR MaLR 1 300 -157 1260 31 0 0 chrX 40353478 40353639 -122246291 + L1PA5 LINE L1 5898 6058 -96 784 164 6 68 chrX 40353639 40353816 -122246114 + MSTB2 LTR MaLR 290 455 -2 2195 205 67 32 chrX 40355271 40355836 -122244094 + MER77 LTR ERV1 41 598 -7 1177 244 27 64 chrX 40355927 40356336 -122243594 - LTR16A LTR ERVL 0 450 57 835 155 10 125 chrX 40357038 40357131 -122242799 + MER33 DNA MER1_type 61 163 -2422 2190 118 0 3 chrX 40357131 40357437 -122242493 - AluSg1 SINE Alu -4 305 1 835 155 10 125 chrX 40357437 40357539 -122242391 + MER33 DNA MER1_type 163 213 -2372 2382 103 0 0 chrX 40357539 40357849 -122242081 - AluSx SINE Alu -2 310 1 835 155 10 125 chrX 40357849 40357949 -122241981 + MER33 DNA MER1_type 213 323 -1 555 244 15 0 chrX 40357994 40358129 -122241801 + LTR16C LTR ERVL 332 468 -23 329 123 0 0 chrX 40358887 40358951 -122240979 - Alu SINE Alu -252 50 1 246 136 0 0 chrX 40359266 40359310 -122240620 + (TTTTC)n Simple_repeat Simple_repeat 4 47 0 567 0 0 0 chrX 40359629 40359692 -122240238 + (TA)n Simple_repeat Simple_repeat 1 63 0 2298 117 3 0 chrX 40359695 40360004 -122239926 - AluSx SINE Alu -2 310 1 925 154 7 0 chrX 40360023 40360159 -122239771 - FRAM SINE Alu -30 146 10 503 220 8 0 chrX 40360275 40360393 -122239537 - MER69 DNA AcHobo -1 2525 2407 426 265 0 0 chrX 40360394 40360496 -122239434 - MER69 DNA AcHobo -979 247 146 5974 214 31 58 chrX 40360497 40360644 -122239286 - L1M4c LINE L1 -1013 5631 5482 1988 163 0 3 chrX 40360644 40360944 -122238986 + AluJb SINE Alu 1 299 -13 5974 214 31 58 chrX 40360944 40362225 -122237705 - L1M4c LINE L1 -1162 5482 4271 2369 89 0 16 chrX 40362225 40362541 -122237389 - AluSx SINE Alu -1 311 1 5974 214 31 58 chrX 40362541 40363178 -122236752 - L1M4c LINE L1 -2373 4271 3619 1666 182 67 45 chrX 40363204 40363622 -122236308 + MER31B LTR ERV1 1 427 -39 324 43 0 0 chrX 40363624 40363670 -122236260 + MADE1 DNA Mariner 1 46 -34 1120 197 145 8 chrX 40363693 40364044 -122235886 - L1M4 LINE L1 -3144 3500 3102 1559 272 60 14 chrX 40364810 40365319 -122234611 + L2 LINE L2 2517 3048 -265 3397 55 2 73 chrX 40365329 40365836 -122234094 - L1PA8 LINE L1 -16 6156 5686 250 29 0 0 chrX 40365842 40365877 -122234053 + L1PA8 LINE L1 5644 5678 -494 2141 128 0 0 chrX 40365924 40366228 -122233702 - AluSc SINE Alu -5 304 1 210 191 0 0 chrX 40367508 40367550 -122232380 + (CATA)n Simple_repeat Simple_repeat 1 42 0 278 214 333 0 chrX 40367784 40367868 -122232062 + MER5B DNA MER1_type 67 178 0 1139 176 11 0 chrX 40367968 40368155 -122231775 - MER5A DNA MER1_type 0 189 1 536 251 40 6 chrX 40368211 40368386 -122231544 + L1M4 LINE L1 3788 3968 -2178 * 3193 224 33 16 chrX 40368385 40369654 -122230276 - L1M4c LINE L1 -3069 3575 2287 202 94 0 31 chrX 40371523 40371555 -122228375 + (TTC)n Simple_repeat Simple_repeat 3 33 0 6236 207 46 43 chrX 40371556 40371577 -122228353 - L1M4c LINE L1 -4657 2168 2149 873 129 8 0 chrX 40371577 40371709 -122228221 - FLAM_C SINE Alu 0 133 1 6236 207 46 43 chrX 40371709 40372281 -122227649 - L1M4c LINE L1 -4676 2149 1581 2237 87 3 6 chrX 40372281 40372592 -122227338 - L1PA11 LINE L1 0 6174 5865 6236 207 46 43 chrX 40372592 40373971 -122225959 - L1M4c LINE L1 -5244 1581 1 351 44 0 0 chrX 40374763 40374808 -122225122 + (TG)n Simple_repeat Simple_repeat 2 46 0 245 158 32 179 chrX 40375693 40375788 -122224142 - L2 LINE L2 -6 3307 3227 2199 113 14 0 chrX 40376246 40376539 -122223391 + AluSx SINE Alu 1 297 -15 239 130 0 22 chrX 40376699 40376745 -122223185 + (TTTTC)n Simple_repeat Simple_repeat 1 45 0 1399 228 75 61 chrX 40376752 40377330 -122222600 - L2 LINE L2 -1 3312 2713 196 280 0 20 chrX 40377711 40377761 -122222169 + L2 LINE L2 3182 3230 -83 736 265 63 5 chrX 40377945 40378168 -122221762 + MER97c DNA MER1_type? 2 237 -853 5083 230 3 11 chrX 40378199 40380307 -122219623 + L1PA13 LINE L1 1 2444 -4353 2394 106 3 0 chrX 40380307 40380618 -122219312 + AluSp SINE Alu 2 313 0 5083 230 3 11 chrX 40380618 40381754 -122218176 + L1PA13 LINE L1 2444 3587 -3210 2334 132 3 0 chrX 40381783 40382139 -122217791 + L1PA15 LINE L1 5805 6161 -4 9979 220 35 30 chrX 40382182 40383620 -122216310 - L1M3 LINE L1 -516 6627 5198 2081 90 52 10 chrX 40383620 40383909 -122216021 - AluY SINE Alu -10 301 1 1866 149 7 4 chrX 40383915 40384196 -122215734 - AluJb SINE Alu -20 292 11 9979 220 35 30 chrX 40384196 40386058 -122213872 - L1M3 LINE L1 -1949 5194 3183 2255 131 0 3 chrX 40386058 40386370 -122213560 - AluSx SINE Alu -1 311 1 9979 220 35 30 chrX 40386370 40387503 -122212427 - L1M3 LINE L1 -3960 3183 2058 278 256 16 31 chrX 40387601 40387730 -122212200 - L1M3 LINE L1 -6903 127 1 566 224 14 0 chrX 40387785 40387928 -122212002 - L1MD2 LINE L1 -13 6346 6202 2255 101 0 0 chrX 40387952 40388239 -122211691 + AluSg SINE Alu 1 287 -23 806 181 62 39 chrX 40388748 40389008 -122210922 - MER20B DNA MER1_type -3 780 515 1078 285 133 6 chrX 40389110 40389576 -122210354 - MER20B DNA MER1_type -256 527 3 744 331 167 34 chrX 40389798 40390300 -122209630 - L2 LINE L2 -359 2955 2387 2210 130 0 0 chrX 40390427 40390734 -122209196 + AluSx SINE Alu 1 307 -5 566 301 83 5 chrX 40392731 40392947 -122206983 - MIR SINE MIR -15 247 15 399 292 19 32 chrX 40393539 40393755 -122206175 - L1MEd LINE L1 -4923 1196 984 * 1187 115 5 55 chrX 40393754 40393971 -122205959 + L1P5 LINE L1 5521 5726 -428 277 318 38 15 chrX 40393963 40394095 -122205835 - L1MEd LINE L1 -5422 697 563 * 303 340 30 0 chrX 40394361 40394461 -122205469 - L1MEd LINE L1 -5928 191 89 6145 95 6 7 chrX 40395032 40396215 -122203715 + L1PB1 LINE L1 4991 6172 0 29 78 0 0 chrX 40396338 40396402 -122203528 + AT_rich Low_complexity Low_complexity 1 64 0 260 298 84 8 chrX 40396835 40396966 -122202964 + L2 LINE L2 1281 1421 -1893 462 194 0 11 chrX 40397044 40397137 -122202793 - L1MC5 LINE L1 -60 7901 7810 2403 136 84 16 chrX 40397207 40397635 -122202295 - MSTB2 LTR MaLR 0 457 1 26 0 0 0 chrX 40397762 40397788 -122202142 + AT_rich Low_complexity Low_complexity 1 26 0 607 295 102 57 chrX 40397816 40398304 -122201626 + L2 LINE L2 1713 2222 -1092 357 314 92 7 chrX 40399268 40399421 -122200509 - MIR SINE MIR -93 169 4 1861 155 10 33 chrX 40399457 40399760 -122200170 - AluJb SINE Alu -7 305 10 835 189 127 50 chrX 40399912 40400172 -122199758 - MLT1G LTR MaLR 0 590 311 350 125 12 0 chrX 40400182 40400262 -122199668 + (TC)n Simple_repeat Simple_repeat 1 81 0 294 188 114 100 chrX 40400285 40400435 -122199495 - MLT1F1 LTR MaLR -365 225 72 311 276 103 0 chrX 40400679 40400766 -122199164 + L2 LINE L2 3208 3303 -10 848 253 112 23 chrX 40401024 40401494 -122198436 + MLT1G1 LTR MaLR 10 546 -9 391 362 9 0 chrX 40401766 40401882 -122198048 + MER5A DNA MER1_type 69 185 -4 3303 104 10 0 chrX 40401911 40402413 -122197517 + L1PA16 LINE L1 5467 5973 -193 698 222 45 17 chrX 40404268 40404444 -122195486 + MIR SINE MIR 79 259 -3 273 244 33 67 chrX 40404608 40404698 -122195232 + L2 LINE L2 3225 3311 -2 794 147 28 0 chrX 40404875 40405018 -122194912 - L1MA9 LINE L1 -5 6307 6161 718 224 217 41 chrX 40406079 40406498 -122193432 - MLT1H LTR MaLR -3 546 12 455 324 22 32 chrX 40406574 40406759 -122193171 + MIR3 SINE MIR 3 185 -23 528 314 168 8 chrX 40407434 40407797 -122192133 + L2 LINE L2 1931 2351 -963 2543 295 58 11 chrX 40408076 40409183 -122190747 + ERVL LTR ERVL 4179 5396 -368 277 292 56 49 chrX 40409518 40409662 -122190268 + LTR33A LTR ERVL 7 151 -372 396 250 45 8 chrX 40409803 40409935 -122189995 + LTR33A LTR ERVL 331 467 -56 2569 130 23 30 chrX 40410183 40410620 -122189310 - Tigger2a DNA MER2_type 0 434 1 23 0 0 0 chrX 40410901 40410924 -122189006 + AT_rich Low_complexity Low_complexity 1 23 0 9274 188 57 7 chrX 40410928 40414929 -122185001 - L1MA2 LINE L1 0 7723 3380 5621 171 40 23 chrX 40414929 40416057 -122183873 - L1MA2 LINE L1 -6397 1168 22 4639 178 45 37 chrX 40416228 40417422 -122182508 - L1MD2 LINE L1 -3 6750 5546 * 28571 59 0 2 chrX 40417419 40423589 -122176341 - L1PA5 LINE L1 0 6154 1 10851 220 45 28 chrX 40423588 40423679 -122176251 - L1MD2 LINE L1 -978 5562 5474 * 1848 133 50 0 chrX 40423679 40423958 -122175972 + AluSg SINE Alu 1 293 -17 10851 220 45 28 chrX 40423958 40424494 -122175436 - L1MD2 LINE L1 -1066 5474 4949 1925 122 6 35 chrX 40424494 40424839 -122175091 - L1MA2 LINE L1 0 6304 5970 10851 220 45 28 chrX 40424839 40424956 -122174974 - L1MD2 LINE L1 -1591 4949 4835 243 61 0 0 chrX 40424956 40424989 -122174941 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2076 120 0 0 chrX 40424991 40425275 -122174655 - AluSq SINE Alu -29 284 1 10851 220 45 28 chrX 40425275 40425341 -122174589 - L1MD2 LINE L1 -1705 4835 4772 14640 125 18 27 chrX 40425341 40427780 -122172150 - Tigger1 DNA MER2_type 0 2418 1 10851 220 45 28 chrX 40427780 40430083 -122169847 - L1MD2 LINE L1 -1768 4772 2366 216 0 0 0 chrX 40430083 40430107 -122169823 + (TG)n Simple_repeat Simple_repeat 2 25 0 10851 220 45 28 chrX 40430107 40430611 -122169319 - L1MD2 LINE L1 -4174 2366 1872 926 204 87 0 chrX 40430615 40430854 -122169076 - L1MD2 LINE L1 -4538 1933 1572 2472 51 0 3 chrX 40431022 40431317 -122168613 - AluY SINE Alu -16 295 2 219 69 0 0 chrX 40431981 40432010 -122167920 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 363 296 81 58 chrX 40433024 40433812 -122166118 - L1M4 LINE L1 -957 5189 4384 248 216 0 0 chrX 40434017 40434068 -122165862 + L1ME4a LINE L1 5571 5621 -500 229 277 20 10 chrX 40434120 40434221 -122165709 + L1ME4a LINE L1 6004 6105 -16 522 220 28 0 chrX 40434336 40434445 -122165485 + MIR SINE MIR 36 147 -115 481 243 26 26 chrX 40435860 40436012 -122163918 + MIR SINE MIR 111 262 0 207 194 0 0 chrX 40436914 40436950 -122162980 + CT-rich Low_complexity Low_complexity 4 39 0 4480 119 118 93 chrX 40436989 40437569 -122162361 - L1MC3 LINE L1 0 7785 7221 285 295 51 0 chrX 40437569 40437647 -122162283 - MLT1F1 LTR MaLR -436 131 50 1731 93 24 0 chrX 40437656 40437904 -122162026 - L1PA11 LINE L1 -3 6171 5918 4480 119 118 93 chrX 40437904 40438290 -122161640 - L1MC3 LINE L1 -571 7214 6706 1370 182 30 30 chrX 40438299 40438568 -122161362 + AluJo SINE Alu 37 305 -7 7072 153 22 21 chrX 40438571 40439841 -122160089 - L1MC3 LINE L1 -1054 6731 5461 11752 201 19 12 chrX 40439846 40441479 -122158451 + L1PB1 LINE L1 1669 3306 -2840 2150 130 0 7 chrX 40441479 40441779 -122158151 + AluSq SINE Alu 1 298 -15 11752 201 19 12 chrX 40441779 40443171 -122156759 + L1PB1 LINE L1 3306 4687 -1459 5658 110 28 1 chrX 40443171 40444367 -122155563 + L1PB1 LINE L1 4928 6147 -4 1115 166 27 10 chrX 40444367 40444705 -122155225 - L1MC3 LINE L1 -743 5403 5127 5669 234 34 17 chrX 40444707 40445401 -122154529 - L1MC3 LINE L1 -1043 5103 4422 2261 96 7 7 chrX 40445401 40445703 -122154227 - AluSq SINE Alu -11 302 1 5669 234 34 17 chrX 40445703 40446586 -122153344 - L1MC3 LINE L1 -1724 4422 3499 1147 164 17 58 chrX 40446591 40446649 -122153281 - MER33 DNA MER1_type -2304 281 222 2205 133 0 0 chrX 40446649 40446958 -122152972 + AluSx SINE Alu 1 309 -3 1147 164 17 58 chrX 40446958 40447191 -122152739 - MER33 DNA MER1_type -2363 222 2 287 170 0 0 chrX 40447192 40447245 -122152685 + MER97c DNA MER1_type? 197 249 -841 208 250 0 0 chrX 40448047 40448095 -122151835 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 190 294 0 0 chrX 40448283 40448334 -122151596 - MIR SINE MIR -103 159 109 3029 128 14 50 chrX 40448412 40448975 -122150955 - L1MA10 LINE L1 -1 6333 5791 279 343 9 94 chrX 40449028 40449241 -122150689 + MIR SINE MIR 67 261 -1 511 274 139 30 chrX 40449473 40449674 -122150256 - MIR SINE MIR -35 227 5 21 0 0 0 chrX 40450357 40450378 -122149552 + AT_rich Low_complexity Low_complexity 1 21 0 379 309 60 39 chrX 40451400 40451633 -122148297 + L3 LINE CR1 680 917 -660 241 298 0 24 chrX 40451733 40451817 -122148113 + GA-rich Low_complexity Low_complexity 3 84 0 2161 116 0 0 chrX 40452180 40452483 -122147447 + AluY SINE Alu 1 303 -8 375 78 0 0 chrX 40452483 40452534 -122147396 + (GGGGA)n Simple_repeat Simple_repeat 2 52 0 2044 127 3 0 chrX 40452628 40452928 -122147002 + AluJb SINE Alu 3 303 -9 1677 180 0 14 chrX 40453047 40453342 -122146588 + AluJo SINE Alu 1 291 -21 476 175 79 0 chrX 40453748 40453862 -122146068 - MER103 DNA DNA -4 162 40 22 0 0 0 chrX 40454559 40454581 -122145349 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 40455431 40455452 -122144478 + AT_rich Low_complexity Low_complexity 1 21 0 1189 152 25 12 chrX 40455558 40455801 -122144129 - L1MB8 LINE L1 -9 6169 5924 418 259 9 4 chrX 40455853 40455964 -122143966 - L1P4 LINE L1 -394 5771 5657 193 299 61 76 chrX 40456262 40456459 -122143471 + MIR SINE MIR 23 216 -46 193 275 0 75 chrX 40456833 40456913 -122143017 - L2 LINE L2 -73 3240 3167 1642 172 81 47 chrX 40456961 40457099 -122142831 - LTR37A LTR ERV1 -6 420 288 504 86 0 0 chrX 40457099 40457169 -122142761 + (TA)n Simple_repeat Simple_repeat 2 71 0 1642 172 81 47 chrX 40457169 40457388 -122142542 - LTR37A LTR ERV1 -138 288 45 1175 204 0 5 chrX 40457388 40457609 -122142321 + MER58A DNA MER1_type 4 223 -1 1642 172 81 47 chrX 40457609 40457656 -122142274 - LTR37A LTR ERV1 -381 45 1 2133 123 128 10 chrX 40458709 40459092 -122140838 - MSTA LTR MaLR 0 428 1 383 273 83 25 chrX 40459469 40459590 -122140340 + MER5B DNA MER1_type 1 128 -50 1871 164 3 3 chrX 40459595 40459888 -122140042 - AluJo SINE Alu -19 293 1 1330 234 65 85 chrX 40459943 40460657 -122139273 - L1ME3A LINE L1 -48 6114 5455 3653 109 23 86 chrX 40460678 40461318 -122138612 - LTR26 LTR ERV1 -3 600 1 976 226 16 3 chrX 40461321 40461637 -122138293 - L1ME3A LINE L1 -718 5444 5127 1109 230 58 69 chrX 40462069 40462423 -122137507 - MER39 LTR ERV1 0 707 144 2832 207 2 53 chrX 40462423 40463007 -122136923 + MLT2B3 LTR ERVL 1 554 0 1109 230 58 69 chrX 40463007 40463150 -122136780 - MER39 LTR ERV1 -563 144 1 202 320 134 52 chrX 40463218 40463390 -122136540 - L2 LINE L2 -510 2804 2619 21 36 0 0 chrX 40463408 40463436 -122136494 + AT_rich Low_complexity Low_complexity 1 28 0 453 332 128 24 chrX 40463749 40464047 -122135883 - L2 LINE L2 -846 2468 2140 978 296 58 55 chrX 40464056 40464874 -122135056 - L1ME3A LINE L1 -1227 4919 4100 8147 198 43 31 chrX 40464876 40468192 -122131738 + L1MC1 LINE L1 886 4149 -2464 984 132 0 0 chrX 40468192 40468344 -122131586 + L1MA2 LINE L1 6153 6304 0 8147 198 43 31 chrX 40468344 40470833 -122129097 + L1MC1 LINE L1 4149 6608 -5 230 0 0 32 chrX 40471111 40471142 -122128788 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 40832 49 3 3 chrX 40471142 40473676 -122126254 - L1PA4 LINE L1 -16 6139 3606 2397 94 0 0 chrX 40473676 40473985 -122125945 - AluY SINE Alu -2 309 1 40832 49 3 3 chrX 40473985 40477550 -122122380 - L1PA4 LINE L1 -2549 3606 41 1958 190 226 4 chrX 40478845 40479376 -122120554 + MLT1E1 LTR MaLR 6 654 0 331 309 147 10 chrX 40479412 40479616 -122120314 - L1M4 LINE L1 -2406 5159 4928 2931 83 6 28 chrX 40479711 40480178 -122119752 - L1PA8 LINE L1 -895 5251 4795 7086 48 15 3 chrX 40480178 40481081 -122118849 + L1PA8 LINE L1 5254 6171 -1 411 205 177 76 chrX 40481195 40481444 -122118486 - L1M4 LINE L1 -2749 4816 4543 1464 248 165 55 chrX 40481483 40481502 -122118428 - HAL1 LINE L1 -1 2506 2490 252 59 0 0 chrX 40481502 40481536 -122118394 + (TG)n Simple_repeat Simple_repeat 1 34 0 1464 248 165 55 chrX 40481536 40482869 -122117061 - HAL1 LINE L1 -17 2490 1006 697 270 28 33 chrX 40482994 40483386 -122116544 - L1M4 LINE L1 -3096 4469 4080 3731 188 67 1 chrX 40483502 40484206 -122115724 - MER21B LTR ERV1 -113 750 1 350 324 128 25 chrX 40484208 40484489 -122115441 - L1M4 LINE L1 -3539 4026 3717 1909 131 20 18 chrX 40484491 40484834 -122115096 - L1MA2 LINE L1 0 6304 5961 5147 91 26 8 chrX 40484846 40485623 -122114307 - L1PA13 LINE L1 -3 6160 5370 949 159 19 0 chrX 40485624 40485781 -122114149 - LTR10D LTR ERV1 0 513 354 2900 249 83 53 chrX 40485786 40486112 -122113818 - L1M4 LINE L1 -6216 1349 1034 2067 149 79 30 chrX 40486112 40486541 -122113389 + LTR7 LTR ERV1 1 450 0 2900 249 83 53 chrX 40486541 40487507 -122112423 - L1M4 LINE L1 -6531 1034 19 22 0 0 0 chrX 40487886 40487908 -122112022 + AT_rich Low_complexity Low_complexity 1 22 0 1166 256 114 77 chrX 40487927 40489883 -122110047 - L1MC5 LINE L1 -673 7288 5265 352 304 77 24 chrX 40489918 40490241 -122109689 - L1MC5 LINE L1 -978 5168 4805 2130 139 0 0 chrX 40490241 40490542 -122109388 - AluSx SINE Alu -11 301 1 352 304 77 24 chrX 40490542 40490751 -122109179 - L1MC5 LINE L1 -1341 4805 4608 562 340 84 15 chrX 40491004 40491336 -122108594 - HAL1 LINE L1 -868 1639 1285 4862 104 22 16 chrX 40491341 40492129 -122107801 - L1PA16 LINE L1 -9 6157 5366 2537 216 10 2 chrX 40492131 40492734 -122107196 + L1 LINE L1 4084 4691 -1455 1594 181 3 20 chrX 40492743 40493036 -122106894 - AluJo SINE Alu -23 289 2 1202 145 0 0 chrX 40493334 40493506 -122106424 - AluJb SINE Alu -14 298 127 36171 85 5 10 chrX 40493655 40499831 -122100099 - L1PA6 LINE L1 0 6154 11 253 353 43 0 chrX 40500595 40500711 -122099219 - LTR67 LTR ERVL -336 221 101 2200 108 3 0 chrX 40501762 40502050 -122097880 - AluSc SINE Alu -20 289 1 1751 162 3 34 chrX 40502057 40502354 -122097576 - AluJo SINE Alu -20 292 5 25 0 0 0 chrX 40503149 40503174 -122096756 + AT_rich Low_complexity Low_complexity 1 25 0 2391 189 79 20 chrX 40503880 40504472 -122095458 - L1MD2 LINE L1 -311 6048 5422 2363 101 41 103 chrX 40504576 40505040 -122094890 - L1MC1 LINE L1 0 6333 5899 3847 150 32 10 chrX 40505040 40505918 -122094012 + L1MC1 LINE L1 5341 6053 -280 31191 101 8 53 chrX 40505929 40512374 -122087556 + L1PA7 LINE L1 12 6154 0 1256 145 27 8 chrX 40512370 40512828 -122087102 + L1MC2 LINE L1 5725 6343 -1 * 1844 208 66 43 chrX 40512828 40513361 -122086569 + L1ME1 LINE L1 5603 6147 -19 439 311 12 0 chrX 40513952 40514113 -122085817 + (CA)n Simple_repeat Simple_repeat 2 164 0 1428 142 0 9 chrX 40514197 40514409 -122085521 + AluJo SINE Alu 86 295 -17 228 164 73 36 chrX 40514445 40514500 -122085430 + L1MB5 LINE L1 5416 5472 -692 2698 159 26 48 chrX 40514501 40515066 -122084864 + L1MB5 LINE L1 5622 6174 0 970 196 58 4 chrX 40515069 40515309 -122084621 - L1MDa LINE L1 -4654 1886 1634 1528 151 72 7 chrX 40515311 40515615 -122084315 - L1MC3 LINE L1 -1 7784 7461 1353 201 115 42 chrX 40515776 40516039 -122083891 - L1MDa LINE L1 -4898 1642 1399 3431 67 11 39 chrX 40516039 40516440 -122083490 + MLT2A2 LTR ERVL 1 389 -64 267 54 0 0 chrX 40516440 40516477 -122083453 + (TG)n Simple_repeat Simple_repeat 2 38 0 3431 67 11 39 chrX 40516477 40516541 -122083389 + MLT2A2 LTR ERVL 389 453 0 1353 201 115 42 chrX 40516541 40516844 -122083086 - L1MDa LINE L1 -5141 1399 1035 622 264 47 99 chrX 40517641 40518065 -122081865 - L1MDa LINE L1 -6083 457 56 2085 229 52 6 chrX 40518098 40518749 -122081181 - L1M4 LINE L1 -3173 2973 2293 6570 77 4 40 chrX 40518750 40520405 -122079525 - L1PA13 LINE L1 -4 6159 4533 459 87 0 14 chrX 40520396 40520465 -122079465 - L1PA10 LINE L1 -6 6162 6095 * 11385 161 21 4 chrX 40520475 40522962 -122076968 - L1P4 LINE L1 -702 5781 3210 * 42769 51 3 3 chrX 40522961 40529109 -122070821 + L1PA4 LINE L1 1 6150 -5 10220 200 13 50 chrX 40529114 40530787 -122069143 - L1P4 LINE L1 -3241 3220 1492 2301 128 14 8 chrX 40530787 40531140 -122068790 - THE1A LTR MaLR 0 355 1 10220 200 13 50 chrX 40531140 40532576 -122067354 - L1P4 LINE L1 -4969 1492 4 * 16444 172 3 12 chrX 40532565 40535645 -122064285 - L1PA13 LINE L1 -1588 5209 2159 290 100 0 20 chrX 40535651 40535701 -122064229 + MADE1 DNA Mariner 1 49 -31 7395 218 151 7 chrX 40535701 40537370 -122062560 - L1PA13 LINE L1 -4878 1909 1 877 260 50 44 chrX 40537375 40537878 -122062052 - L1MEc LINE L1 -3984 3154 2649 1856 198 59 3 chrX 40537881 40538254 -122061676 + MER93a LTR ERV1 1 394 -8 619 248 14 38 chrX 40538326 40538536 -122061394 - L1MEc LINE L1 -5443 1416 1212 21 36 0 0 chrX 40538550 40538578 -122061352 + AT_rich Low_complexity Low_complexity 1 28 0 748 280 48 53 chrX 40538621 40539014 -122060916 - L1MEc LINE L1 -5668 1187 797 491 257 187 14 chrX 40539105 40539319 -122060611 - L1MEc LINE L1 -6598 261 11 356 304 146 13 chrX 40540339 40540497 -122059433 + MER5A DNA MER1_type 11 189 0 3094 173 53 53 chrX 40540664 40541404 -122058526 - L1MB7 LINE L1 -16 6666 5927 868 150 0 0 chrX 40541404 40541531 -122058399 - AluJb SINE Alu -185 127 1 2933 203 58 3 chrX 40541531 40542162 -122057768 - L1MB7 LINE L1 -735 5937 5261 724 80 18 0 chrX 40542162 40542275 -122057655 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 2933 203 58 3 chrX 40542275 40542418 -122057512 - L1MB7 LINE L1 -1411 5261 5127 * 3507 233 10 33 chrX 40542417 40543383 -122056547 - L1MB7 LINE L1 -1916 4728 3785 5996 225 50 41 chrX 40543419 40545109 -122054821 - L1MB7 LINE L1 -4833 1709 5 2120 106 3 0 chrX 40545990 40546310 -122053620 - AluSp SINE Alu 0 321 1 37 69 0 0 chrX 40546367 40546439 -122053491 + AT_rich Low_complexity Low_complexity 1 72 0 289 306 70 36 chrX 40546488 40546818 -122053112 - L1M4 LINE L1 -3161 2985 2636 980 263 26 46 chrX 40547053 40547419 -122052511 - MLT1I LTR MaLR -7 402 5 1667 198 24 18 chrX 40548903 40549241 -122050689 + MER58B DNA MER1_type 2 341 0 696 315 4 37 chrX 40549433 40549674 -122050256 + LTR16C LTR ERVL 36 268 -223 249 108 0 0 chrX 40549682 40549719 -122050211 + (T)n Simple_repeat Simple_repeat 1 37 0 784 263 33 19 chrX 40549719 40549932 -122049998 + LTR16C LTR ERVL 276 491 0 242 248 51 51 chrX 40550293 40550410 -122049520 + L3b LINE CR1 1288 1404 -179 252 308 29 39 chrX 40550444 40550548 -122049382 + MIR SINE MIR 23 125 -137 386 190 0 0 chrX 40550648 40550727 -122049203 - L1MA3 LINE L1 0 6305 6227 24 0 0 0 chrX 40551221 40551245 -122048685 + AT_rich Low_complexity Low_complexity 1 24 0 464 183 167 32 chrX 40551617 40551743 -122048187 - L2 LINE L2 -1 3312 3170 1242 270 98 29 chrX 40551883 40552499 -122047431 - L2 LINE L2 -178 3135 2476 2284 227 99 4 chrX 40552501 40553017 -122046913 - MER69 DNA AcHobo -661 565 1 443 272 201 21 chrX 40553026 40553305 -122046625 - L2 LINE L2 -1206 2108 1780 3252 50 21 5 chrX 40553503 40553925 -122046005 + L1PA8 LINE L1 5741 6169 -3 2339 135 3 13 chrX 40554713 40555090 -122044840 - L1PB4 LINE L1 -3 6153 5781 419 215 8 0 chrX 40555090 40555211 -122044719 + (TA)n Simple_repeat Simple_repeat 2 123 0 288 111 0 111 chrX 40555211 40555274 -122044656 - L1M3 LINE L1 -364 5792 5741 261 350 158 19 chrX 40555490 40555750 -122044180 + L2 LINE L2 2928 3223 -49 342 305 102 0 chrX 40555924 40556042 -122043888 - L2 LINE L2 0 3313 3184 1094 276 147 25 chrX 40556201 40556909 -122043021 - L2 LINE L2 -144 3169 2366 482 262 138 0 chrX 40556947 40557092 -122042838 - L2 LINE L2 -1633 1681 1517 385 293 26 69 chrX 40557417 40557533 -122042397 - MIR SINE MIR -64 144 34 200 216 0 0 chrX 40557970 40558007 -122041923 + CT-rich Low_complexity Low_complexity 3 39 0 225 94 0 0 chrX 40558434 40558466 -122041464 + (GGAGA)n Simple_repeat Simple_repeat 3 34 0 6277 158 68 41 chrX 40558572 40559903 -122040027 - Charlie1a DNA MER1_type -2 1453 88 13960 123 14 1 chrX 40559931 40561997 -122037933 + Tigger1 DNA MER2_type 2 2093 -325 7720 136 8 7 chrX 40561998 40564334 -122035596 + L1MA1 LINE L1 3958 6298 -4 2182 125 20 15 chrX 40564344 40564687 -122035243 + Tigger1 DNA MER2_type 2073 2417 -1 30 59 0 0 chrX 40564829 40564880 -122035050 + AT_rich Low_complexity Low_complexity 1 51 0 3757 227 61 27 chrX 40564907 40565530 -122034400 - L1MD1 LINE L1 0 6636 6035 1734 181 0 26 chrX 40565530 40565840 -122034090 - AluJo SINE Alu -10 302 1 3757 227 61 27 chrX 40565840 40566033 -122033897 - L1MD1 LINE L1 -601 6035 5850 475 32 0 0 chrX 40566033 40566095 -122033835 + L1PA2 LINE L1 6090 6151 -4 3757 227 61 27 chrX 40566095 40566128 -122033802 - L1MD1 LINE L1 -786 5850 5820 189 0 0 0 chrX 40566128 40566149 -122033781 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3757 227 61 27 chrX 40566149 40566396 -122033534 - L1MD1 LINE L1 -816 5820 5583 243 0 0 0 chrX 40566396 40566423 -122033507 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3757 227 61 27 chrX 40566423 40568985 -122030945 - L1MD1 LINE L1 -1053 5583 2654 1197 246 72 25 chrX 40568985 40569346 -122030584 - MLT1C LTR MaLR -2 465 88 4325 213 83 74 chrX 40569349 40570662 -122029268 - L1MD1 LINE L1 -3875 2665 1365 2442 90 3 0 chrX 40570662 40570974 -122028956 - AluSq SINE Alu 0 313 1 4325 213 83 74 chrX 40570974 40571268 -122028662 - L1MD1 LINE L1 -5175 1365 1075 1832 167 3 10 chrX 40571268 40571567 -122028363 + AluJo SINE Alu 1 297 -15 4325 213 83 74 chrX 40571567 40572545 -122027385 - L1MD1 LINE L1 -5465 1075 76 938 204 36 14 chrX 40572701 40572922 -122027008 - L1ME3A LINE L1 -8 6162 5937 328 212 40 20 chrX 40572941 40573040 -122026890 - L1ME3A LINE L1 -328 5842 5742 246 89 71 54 chrX 40573045 40573101 -122026829 - MLT2B2 LTR ERVL 0 515 459 1004 254 92 64 chrX 40573142 40573643 -122026287 - MLT2B3 LTR ERVL -39 515 1 1174 259 33 35 chrX 40573643 40574303 -122025627 - L1ME3A LINE L1 -429 5741 5084 742 196 159 0 chrX 40576481 40576644 -122023286 + MER5A DNA MER1_type 1 189 0 237 376 39 0 chrX 40576737 40576853 -122023077 + MIR SINE MIR 14 143 -68 1080 274 84 23 chrX 40578361 40578918 -122021012 - L1MC4a LINE L1 -127 5994 5402 2223 107 0 0 chrX 40579201 40579509 -122020421 + AluSx SINE Alu 1 308 -4 210 37 0 0 chrX 40579626 40579653 -122020277 + (CAA)n Simple_repeat Simple_repeat 1 27 0 414 69 0 0 chrX 40580307 40580365 -122019565 + (CA)n Simple_repeat Simple_repeat 1 58 0 2119 188 14 2 chrX 40581344 40581758 -122018172 - MER63B DNA MER1_type -13 423 5 3974 289 59 18 chrX 40581998 40583550 -122016380 - HERV16 LTR ERVL -1905 3091 1646 1166 248 44 16 chrX 40583937 40584599 -122015331 - HERV16 LTR ERVL -3859 1137 346 926 235 52 0 chrX 40584624 40584854 -122015076 - HERV16 LTR ERVL -4754 242 1 1296 282 78 24 chrX 40584854 40585265 -122014665 - LTR16A LTR ERVL 0 450 18 227 316 0 0 chrX 40585397 40585454 -122014476 - Tigger7 DNA MER2_type -260 79 23 * 294 211 14 0 chrX 40585450 40585521 -122014409 - MER116 DNA Mariner -8 72 1 582 128 0 0 chrX 40585690 40585776 -122014154 + AluSg/x SINE Alu 216 301 -11 446 299 103 17 chrX 40586518 40586635 -122013295 + L2 LINE L2 3137 3263 -9 255 79 0 0 chrX 40587251 40587289 -122012641 + (TG)n Simple_repeat Simple_repeat 2 39 0 986 223 193 3 chrX 40587401 40587701 -122012229 - MLT1G1 LTR MaLR -6 589 233 2121 94 21 3 chrX 40587873 40588160 -122011770 + AluSc SINE Alu 1 292 -17 309 280 10 0 chrX 40588244 40588404 -122011526 + (TG)n Simple_repeat Simple_repeat 1 161 0 2374 81 0 0 chrX 40588456 40588751 -122011179 - AluSc SINE Alu -14 295 1 3247 231 41 24 chrX 40589298 40589551 -122010379 - L1ME1 LINE L1 -19 6147 5900 2185 115 30 33 chrX 40589551 40589916 -122010014 - THE1B LTR MaLR 0 364 1 12087 81 2 7 chrX 40589916 40591503 -122008427 - THE1B-int LTR MaLR 0 1580 1 2136 130 19 35 chrX 40591503 40591873 -122008057 - THE1B LTR MaLR 0 364 1 3247 231 41 24 chrX 40591873 40592619 -122007311 - L1ME1 LINE L1 -265 5901 5129 33 0 0 0 chrX 40592619 40592652 -122007278 + AT_rich Low_complexity Low_complexity 1 33 0 14642 207 8 14 chrX 40592652 40597428 -122002502 - L1PB1 LINE L1 0 6867 2048 4520 122 39 0 chrX 40598465 40599602 -122000328 - L1PB1 LINE L1 -4814 2049 634 1120 157 5 0 chrX 40599602 40599799 -122000131 - L1PB1 LINE L1 -6663 200 3 1995 226 87 4 chrX 40599808 40600488 -121999442 - L1M4 LINE L1 -1011 5135 4400 1505 101 18 0 chrX 40600496 40600724 -121999206 - L1MA6 LINE L1 0 6300 6069 2526 117 9 41 chrX 40600725 40601067 -121998863 + L1MA6 LINE L1 5625 5952 -348 2155 113 7 0 chrX 40601067 40601360 -121998570 + AluSq SINE Alu 1 295 -18 2526 117 9 41 chrX 40601360 40601454 -121998476 + L1MA6 LINE L1 5952 6047 -253 236 291 10 0 chrX 40601504 40601607 -121998323 - L1M4 LINE L1 -1786 4360 4257 335 299 48 21 chrX 40601672 40602072 -121997858 - L1MDa LINE L1 -4436 1693 1330 411 279 103 20 chrX 40602123 40602424 -121997506 - L1MDa LINE L1 -4887 1232 907 444 382 27 35 chrX 40602445 40602819 -121997111 - L1MDa LINE L1 -5212 907 537 324 315 88 42 chrX 40603012 40603228 -121996702 - L1MDa LINE L1 -5887 232 7 23 54 0 0 chrX 40604213 40604250 -121995680 + AT_rich Low_complexity Low_complexity 1 37 0 350 288 24 0 chrX 40604492 40604617 -121995313 + MER103 DNA DNA 11 138 -28 420 267 76 9 chrX 40604822 40604927 -121995003 - MIR SINE MIR -134 128 17 308 281 37 0 chrX 40605761 40605843 -121994087 - L2 LINE L2 0 3313 3229 3518 63 2 2 chrX 40605843 40606305 -121993625 + HERV17 LTR ERV1 3293 3754 -4872 * 14021 45 1 0 chrX 40606284 40608026 -121991904 + HERV17 LTR ERV1 5405 7147 -1479 304 26 0 0 chrX 40608022 40608061 -121991869 + HERV17 LTR ERV1 7510 7548 -1078 * 2104 60 3 27 chrX 40608051 40608350 -121991580 + HERV17 LTR ERV1 8335 8626 0 2125 100 3 12 chrX 40608350 40608679 -121991251 + LTR17 LTR ERV1 1 326 -454 217 238 159 0 chrX 40608692 40608755 -121991175 - L2 LINE L2 -61 3252 3180 789 299 100 0 chrX 40608981 40609262 -121990668 - L2 LINE L2 -182 3131 2823 635 194 9 0 chrX 40609514 40609729 -121990201 + CT-rich Low_complexity Low_complexity 1 216 0 820 163 7 0 chrX 40609732 40609900 -121990030 - FRAM SINE Alu 0 176 35 616 266 21 31 chrX 40610317 40610509 -121989421 + L2 LINE L2 2679 2868 -446 1112 291 71 3 chrX 40610552 40610944 -121988986 - LTR16A LTR ERVL 0 450 32 2112 122 72 76 chrX 40610944 40611404 -121988526 + MLT1C LTR MaLR 1 458 -9 215 271 120 90 chrX 40611593 40611726 -121988204 + L2 LINE L2 3136 3272 0 268 296 31 41 chrX 40612264 40612362 -121987568 + MIR SINE MIR 34 130 -132 294 186 0 51 chrX 40612793 40612852 -121987078 + L2 LINE L2 3201 3256 -16 1503 282 67 14 chrX 40612951 40613458 -121986472 + L1ME1 LINE L1 36 569 -5827 2145 153 20 112 chrX 40613462 40614006 -121985924 + MLT1D LTR MaLR 2 495 -10 264 203 243 10 chrX 40614125 40614215 -121985715 + L1ME1 LINE L1 4349 4417 -1798 2285 105 3 0 chrX 40614215 40614511 -121985419 + AluSq SINE Alu 1 297 -16 264 203 243 10 chrX 40614511 40614622 -121985308 + L1ME1 LINE L1 4417 4597 -1618 1101 195 22 19 chrX 40614633 40614657 -121985273 + L1ME1 LINE L1 5355 5377 -854 1737 153 27 27 chrX 40614657 40614958 -121984972 + AluJo SINE Alu 1 301 -11 1101 195 22 19 chrX 40614958 40615201 -121984729 + L1ME1 LINE L1 5377 5622 -609 257 193 0 0 chrX 40615204 40615261 -121984669 + LTR28 LTR ERV1 1 57 -963 * 2239 146 54 0 chrX 40615233 40615623 -121984307 + MER61C LTR ERV1 14 424 -10 2159 212 30 43 chrX 40615635 40616258 -121983672 + L1ME1 LINE L1 5620 6234 -1 620 297 83 32 chrX 40616289 40617152 -121982778 + L1MC4a LINE L1 4368 5274 -872 23 68 0 0 chrX 40617214 40617258 -121982672 + AT_rich Low_complexity Low_complexity 1 44 0 2422 73 0 3 chrX 40617258 40617558 -121982372 + AluY SINE Alu 1 299 -12 1081 148 0 0 chrX 40617558 40617729 -121982201 + AluSg/x SINE Alu 134 304 0 375 105 0 0 chrX 40617812 40617869 -121982061 + (TG)n Simple_repeat Simple_repeat 2 58 0 8069 202 44 59 chrX 40617873 40620308 -121979622 + L1MC4a LINE L1 5365 7985 -3 378 0 0 0 chrX 40620319 40620361 -121979569 + (TG)n Simple_repeat Simple_repeat 2 43 0 2318 89 0 0 chrX 40620967 40621258 -121978672 + AluSx SINE Alu 16 306 -6 2303 109 0 0 chrX 40621627 40621929 -121978001 + AluSq SINE Alu 1 302 -11 852 212 10 25 chrX 40622636 40622834 -121977096 - LTR16A LTR ERVL -13 437 243 3696 182 88 11 chrX 40622886 40623668 -121976262 + MER21B LTR ERV1 1 842 -21 342 300 0 33 chrX 40625797 40625917 -121974013 - MARNA DNA Mariner -410 176 61 568 182 38 23 chrX 40625929 40626061 -121973869 + MER94 DNA DNA 1 134 0 1450 264 58 10 chrX 40626452 40626865 -121973065 + LTR16A LTR ERVL 18 450 0 313 291 78 0 chrX 40627180 40627283 -121972647 + L2 LINE L2 3162 3272 0 2386 94 3 3 chrX 40629796 40630105 -121969825 - AluSx SINE Alu -3 309 1 241 235 0 0 chrX 40630245 40630313 -121969617 - L1MB7 LINE L1 0 6682 6615 200 143 29 0 chrX 40630321 40630356 -121969574 + (TA)n Simple_repeat Simple_repeat 2 37 0 879 192 19 0 chrX 40630361 40630560 -121969370 - AluJo SINE Alu 0 324 123 3787 178 35 3 chrX 40630560 40631339 -121968591 - L1MB7 LINE L1 -91 6591 5788 512 110 0 0 chrX 40631340 40631413 -121968517 - AluSc SINE Alu -8 301 229 258 81 0 0 chrX 40631440 40631477 -121968453 + (TA)n Simple_repeat Simple_repeat 1 37 0 2253 105 3 13 chrX 40631477 40631783 -121968147 - AluY SINE Alu -8 303 1 2446 70 0 0 chrX 40631802 40632101 -121967829 - AluY SINE Alu -12 299 1 886 371 0 0 chrX 40632101 40632343 -121967587 - L1MB7 LINE L1 -1904 4740 4826 2944 108 2 21 chrX 40632343 40632411 -121967519 - MSTA LTR MaLR 0 428 360 2179 97 4 0 chrX 40632411 40632718 -121967212 + AluSg SINE Alu 1 308 0 2944 108 2 21 chrX 40632718 40633081 -121966849 - MSTA LTR MaLR -68 360 2 886 371 0 0 chrX 40633081 40633129 -121966801 - L1MB7 LINE L1 -1817 4827 4473 393 222 0 50 chrX 40633136 40633162 -121966768 + MER21B LTR ERV1 1 27 -836 423 0 0 0 chrX 40633162 40633209 -121966721 + (CA)n Simple_repeat Simple_repeat 2 48 0 393 222 0 50 chrX 40633209 40633281 -121966649 + MER21B LTR ERV1 27 94 -769 * 4178 189 21 14 chrX 40633279 40633739 -121966191 + MER21B LTR ERV1 43 513 -350 2357 75 0 37 chrX 40633739 40634060 -121965870 - AluSq SINE Alu -4 309 1 4178 189 21 14 chrX 40634060 40634408 -121965522 + MER21B LTR ERV1 513 857 -6 3564 261 17 2 chrX 40634421 40635589 -121964341 - L1MB7 LINE L1 -2166 4478 3293 299 326 34 7 chrX 40635679 40635826 -121964104 - L1MB7 LINE L1 -6027 519 369 295 271 12 65 chrX 40635865 40635956 -121963974 - L1MB7 LINE L1 -6359 183 104 1939 77 106 0 chrX 40635956 40636230 -121963700 - AluSg1 SINE Alu -6 303 1 295 271 12 65 chrX 40636230 40636308 -121963622 - L1MB7 LINE L1 -6438 104 23 403 283 184 42 chrX 40636496 40636708 -121963222 - MIR SINE MIR 0 262 21 342 248 0 7 chrX 40637172 40637284 -121962646 - MER91A DNA MER1_type -1 189 1 247 389 62 0 chrX 40637289 40637402 -121962528 + L2 LINE L2 3153 3272 0 365 176 27 14 chrX 40638004 40638078 -121961852 - L2 LINE L2 -4 3309 3235 327 349 0 0 chrX 40638136 40638219 -121961711 + L2 LINE L2 3185 3267 -5 324 263 0 32 chrX 40638531 40638626 -121961304 - L1MC4 LINE L1 -1339 6703 6612 309 158 37 0 chrX 40638629 40638711 -121961219 + (TA)n Simple_repeat Simple_repeat 2 86 0 2163 239 56 18 chrX 40638755 40639324 -121960606 + MLT1E LTR MaLR 3 593 0 6202 241 60 30 chrX 40639579 40640899 -121959031 + L1ME1 LINE L1 34 1313 -4902 2209 117 0 10 chrX 40640899 40641207 -121958723 + AluSx SINE Alu 1 305 -7 6202 241 60 30 chrX 40641207 40642080 -121957850 + L1ME1 LINE L1 1313 2158 -4057 1969 150 35 0 chrX 40642080 40642367 -121957563 + AluSx SINE Alu 1 297 -15 6202 241 60 30 chrX 40642367 40642650 -121957280 + L1ME1 LINE L1 2158 2431 -3784 3887 72 14 2 chrX 40642650 40643149 -121956781 + L1PA14 LINE L1 5639 6161 0 6202 241 60 30 chrX 40643149 40643585 -121956345 + L1ME1 LINE L1 2431 2853 -3362 2399 102 0 0 chrX 40643585 40643890 -121956040 - AluSx SINE Alu -7 305 1 6202 241 60 30 chrX 40643890 40644559 -121955371 + L1ME1 LINE L1 2853 3752 -2463 1926 164 15 50 chrX 40644559 40644962 -121954968 + MLT1B LTR MaLR 1 389 -1 6202 241 60 30 chrX 40644962 40645052 -121954878 + L1ME1 LINE L1 3752 3838 -2377 2850 154 42 20 chrX 40645081 40645908 -121954022 - MER54A LTR ERVL 0 644 1 569 223 69 0 chrX 40645909 40646084 -121953846 + L1ME1 LINE L1 3855 4041 -2174 * 2337 196 79 36 chrX 40646081 40646935 -121952995 + L1ME1 LINE L1 5163 6050 -185 525 146 91 9 chrX 40646936 40647046 -121952884 + L1MA10 LINE L1 6209 6327 -7 316 297 90 0 chrX 40647527 40647638 -121952292 - MIR SINE MIR -63 199 79 304 328 45 22 chrX 40647716 40647786 -121952144 - MIR SINE MIR -21 241 174 2077 92 0 34 chrX 40647786 40647931 -121951999 + AluSx SINE Alu 1 149 -161 315 0 0 0 chrX 40647931 40647966 -121951964 + (TA)n Simple_repeat Simple_repeat 1 35 0 2077 92 0 34 chrX 40647966 40648140 -121951790 + AluSx SINE Alu 149 310 0 304 328 45 22 chrX 40648140 40648202 -121951728 - MIR SINE MIR -88 174 105 250 80 40 0 chrX 40648525 40648575 -121951355 + T-rich Low_complexity Low_complexity 1 52 0 1194 159 4 62 chrX 40649026 40649252 -121950678 - AluJo SINE Alu -13 299 87 363 322 17 9 chrX 40649274 40649389 -121950541 - MIR SINE MIR -114 148 33 554 286 101 0 chrX 40649899 40650067 -121949863 - MIR SINE MIR -49 213 29 710 239 211 7 chrX 40650080 40650364 -121949566 + LTR33 LTR ERVL 180 521 0 283 253 11 58 chrX 40650364 40650451 -121949479 - MIR SINE MIR -177 85 3 208 259 0 37 chrX 40650507 40650561 -121949369 - L2 LINE L2 0 3272 3221 206 264 64 79 chrX 40650573 40650713 -121949217 + MIR SINE MIR 94 231 -31 6429 118 26 15 chrX 40650734 40651725 -121948205 + L1MA4A LINE L1 4559 5584 -719 2186 112 6 16 chrX 40651725 40652038 -121947892 + AluSx SINE Alu 3 312 0 6429 118 26 15 chrX 40652038 40652754 -121947176 + L1MA4A LINE L1 5584 6290 -13 2602 39 0 16 chrX 40652898 40653210 -121946720 + AluY SINE Alu 1 307 -4 300 143 0 0 chrX 40653251 40653307 -121946623 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 1585 163 41 58 chrX 40653523 40653818 -121946112 + AluJo SINE Alu 3 292 -20 300 281 66 54 chrX 40654200 40654367 -121945563 + MIR SINE MIR 35 203 -59 2591 55 0 3 chrX 40654451 40654763 -121945167 - AluY SINE Alu 0 311 1 414 218 15 12 chrX 40655300 40656057 -121943873 - L1MD2 LINE L1 -3 7798 6149 * 1376 190 95 3 chrX 40656056 40656446 -121943484 + L1M4 LINE L1 2528 2953 -3193 11355 106 62 139 chrX 40656446 40656642 -121943288 + Tigger1 DNA MER2_type 1 211 -2207 210 37 0 0 chrX 40656642 40656669 -121943261 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 11355 106 62 139 chrX 40656669 40658134 -121941796 + Tigger1 DNA MER2_type 211 1787 -631 2227 121 0 0 chrX 40658134 40658441 -121941489 + AluSc SINE Alu 1 307 -2 11355 106 62 139 chrX 40658441 40659066 -121940864 + Tigger1 DNA MER2_type 1787 2063 -355 2207 136 0 0 chrX 40659066 40659376 -121940554 + AluSx SINE Alu 1 310 -2 11355 106 62 139 chrX 40659376 40659707 -121940223 + Tigger1 DNA MER2_type 2063 2418 0 3367 224 36 30 chrX 40659717 40659799 -121940131 + L1M4 LINE L1 2962 3042 -3104 2182 123 3 13 chrX 40659799 40660108 -121939822 + AluSx SINE Alu 1 306 -6 3367 224 36 30 chrX 40660108 40660637 -121939293 + L1M4 LINE L1 3042 3567 -2579 311 0 26 0 chrX 40660637 40660676 -121939254 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2282 74 11 0 chrX 40660680 40660965 -121938965 - AluSp SINE Alu -25 288 1 3367 224 36 30 chrX 40660965 40661466 -121938464 + L1M4 LINE L1 3569 4086 -2060 706 184 29 29 chrX 40661465 40661570 -121938360 + L1M4 LINE L1 5094 5201 -945 * 2503 87 0 0 chrX 40661570 40661879 -121938051 + AluSg SINE Alu 1 309 -1 706 184 29 29 chrX 40661879 40661980 -121937950 + L1M4 LINE L1 5200 5300 -846 1693 259 73 26 chrX 40661980 40662904 -121937026 - L1MCc LINE L1 -4505 2520 1307 5066 91 15 1 chrX 40662904 40663583 -121936347 - LTR12 LTR ERV1 0 688 1 1693 259 73 26 chrX 40663583 40664097 -121935833 - L1MCc LINE L1 -5718 1307 818 2890 77 0 3 chrX 40664170 40664546 -121935384 + THE1C LTR MaLR 1 375 0 317 263 170 24 chrX 40664772 40665061 -121934869 - L1MCc LINE L1 -6059 364 34 386 264 208 8 chrX 40665654 40665779 -121934151 - MER5B DNA MER1_type -2 176 27 284 289 0 40 chrX 40665728 40665804 -121934126 + MER5A DNA MER1_type 114 186 -3 * 1611 220 141 17 chrX 40666060 40666542 -121933388 + MLT1F LTR MaLR 1 542 0 2948 20 6 0 chrX 40667011 40667357 -121932573 + L1PA4 LINE L1 5806 6153 -2 839 291 62 34 chrX 40667675 40668177 -121931753 + LTR33 LTR ERVL 5 520 -1 261 0 0 0 chrX 40668184 40668213 -121931717 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1725 293 103 27 chrX 40668213 40668982 -121930948 - L2 LINE L2 -9 3304 2456 1275 181 9 0 chrX 40668982 40669203 -121930727 + MER58A DNA MER1_type 1 223 -1 1725 293 103 27 chrX 40669203 40669451 -121930479 - L2 LINE L2 -857 2456 2228 761 173 24 0 chrX 40669452 40669579 -121930351 + FLAM_A SINE Alu 1 130 -3 2258 177 2 2 chrX 40669631 40670044 -121929886 - MER119 DNA MER1_type 0 583 171 1980 143 3 0 chrX 40670063 40670349 -121929581 + AluJo SINE Alu 15 301 -11 242 138 0 121 chrX 40670351 40670409 -121929521 - MER119 DNA MER1_type -406 177 127 2438 94 129 43 chrX 40671200 40671552 -121928378 + MSTA LTR MaLR 1 392 -36 2277 115 7 0 chrX 40671552 40671856 -121928074 - AluSq SINE Alu -7 306 1 2438 94 129 43 chrX 40671856 40671897 -121928033 + MSTA LTR MaLR 392 428 0 384 22 0 0 chrX 40672349 40672394 -121927536 + (CA)n Simple_repeat Simple_repeat 2 46 0 217 268 28 14 chrX 40672843 40672914 -121927016 + GA-rich Low_complexity Low_complexity 4 75 0 4652 100 9 2 chrX 40673625 40674255 -121925675 - LTR24C LTR ERV1 0 635 1 224 271 0 33 chrX 40675047 40675139 -121924791 + GA-rich Low_complexity Low_complexity 1 88 0 476 191 0 12 chrX 40676059 40676141 -121923789 + LTR56 LTR ERV1 25 105 -340 2310 175 19 86 chrX 40676141 40676641 -121923289 - LTR8 LTR ERV1 0 691 228 3101 170 98 50 chrX 40676641 40677335 -121922595 - LTR8A LTR ERV1 0 727 1 2310 175 19 86 chrX 40677335 40677371 -121922559 - LTR8 LTR ERV1 -463 228 191 3630 110 79 22 chrX 40677371 40677954 -121921976 + MER41B LTR ERV1 1 616 -19 2845 171 27 63 chrX 40677954 40678589 -121921341 + LTR9 LTR ERV1 2 612 0 913 193 39 6 chrX 40678610 40678791 -121921139 - LTR8 LTR ERV1 -495 196 10 321 169 70 104 chrX 40678866 40679058 -121920872 + LTR23 LTR ERV1 249 439 -6 312 130 0 0 chrX 40679078 40679124 -121920806 - Alu SINE Alu -256 46 1 * 344 98 82 16 chrX 40679124 40679177 -121920753 + LTR23 LTR ERV1 381 437 0 359 193 0 0 chrX 40680135 40680192 -121919738 - MER2 DNA MER2_type -288 57 1 473 212 267 79 chrX 40680400 40680718 -121919212 - LTR16A1 LTR ERVL -7 450 49 6861 48 0 13 chrX 40680718 40681508 -121918422 - LTR17 LTR ERV1 0 780 1 473 212 267 79 chrX 40681508 40681567 -121918363 - LTR16A1 LTR ERVL -408 49 2 890 203 43 6 chrX 40681586 40681749 -121918181 - MER58A DNA MER1_type -14 210 42 2740 204 68 72 chrX 40681910 40682740 -121917190 - LTR1B LTR ERV1 0 826 1 432 262 10 0 chrX 40683304 40683407 -121916523 - L2 LINE L2 -13 3300 3197 2518 69 0 3 chrX 40683511 40683815 -121916115 + AluSp SINE Alu 1 303 -10 380 277 99 29 chrX 40683820 40684062 -121915868 + L2 LINE L2 1791 2049 -1265 34 72 0 0 chrX 40684108 40684177 -121915753 + AT_rich Low_complexity Low_complexity 1 69 0 458 270 103 64 chrX 40684798 40685157 -121914773 - L1M4 LINE L1 -831 5315 4943 348 284 131 55 chrX 40685317 40685553 -121914377 + L1ME LINE L1 5313 5566 -555 471 275 43 24 chrX 40685556 40685767 -121914163 + L1ME LINE L1 5598 5812 -309 2007 137 3 3 chrX 40685767 40686060 -121913870 - AluSp SINE Alu -18 295 3 199 262 60 24 chrX 40686141 40686225 -121913705 + L3 LINE CR1 327 413 -1164 890 292 159 23 chrX 40686482 40686955 -121912975 + L3 LINE CR1 403 939 -638 226 241 17 0 chrX 40687322 40687380 -121912550 - MIR SINE MIR -70 192 134 184 231 26 0 chrX 40687422 40687461 -121912469 + L3 LINE CR1 1395 1434 -143 188 150 50 0 chrX 40687492 40687532 -121912398 + MIR3 SINE MIR 166 207 -1 352 290 72 57 chrX 40687917 40688110 -121911820 - MIR SINE MIR -56 206 11 1682 262 78 15 chrX 40689537 40689999 -121909931 + LTR16C LTR ERVL 1 491 0 2370 91 0 7 chrX 40690223 40690531 -121909399 + AluSg SINE Alu 1 306 -4 2619 215 15 71 chrX 40690756 40691083 -121908847 + L1M4 LINE L1 4 271 -6271 2153 95 0 70 chrX 40691083 40691398 -121908532 + AluSg SINE Alu 1 293 -17 2619 215 15 71 chrX 40691398 40691786 -121908144 + L1M4 LINE L1 271 679 -5863 1591 200 11 7 chrX 40691818 40692103 -121907827 + L1M4 LINE L1 668 953 -5589 1142 195 6 88 chrX 40692104 40692164 -121907766 + L1M4 LINE L1 4193 4256 -2388 2159 120 16 0 chrX 40692164 40692472 -121907458 + AluSq SINE Alu 1 313 0 1142 195 6 88 chrX 40692472 40692729 -121907201 + L1M4 LINE L1 4256 4484 -2160 1725 162 196 40 chrX 40692736 40693210 -121906720 + LTR10A LTR ERV1 1 548 -61 1871 204 27 2 chrX 40693224 40693630 -121906300 + L1M4 LINE L1 4493 4908 -1736 222 244 0 24 chrX 40693656 40693738 -121906192 + A-rich Low_complexity Low_complexity 2 81 0 450 0 0 0 chrX 40693780 40693830 -121906100 + (TCTCCC)n Simple_repeat Simple_repeat 6 55 0 8033 24 8 310 chrX 40693834 40695766 -121904164 + SVA Other Other 38 1386 0 2246 143 65 0 chrX 40695766 40696152 -121903778 + L1M4 LINE L1 5797 6207 -469 2438 70 7 0 chrX 40696152 40696451 -121903479 - AluY SINE Alu -9 302 2 5287 202 16 24 chrX 40696691 40697082 -121902848 + MER45B DNA AcHobo 1 394 -1187 2186 115 0 0 chrX 40697082 40697377 -121902553 - AluSx SINE Alu -17 295 1 5287 202 16 24 chrX 40697377 40697412 -121902518 + MER45B DNA AcHobo 394 428 -1153 2228 101 3 0 chrX 40697412 40697708 -121902222 + AluSx SINE Alu 1 297 -15 5287 202 16 24 chrX 40697708 40698323 -121901607 + MER45B DNA AcHobo 428 1035 -5 228 304 163 11 chrX 40698978 40699070 -121900860 - MIR SINE MIR -66 142 37 361 189 95 0 chrX 40699263 40699337 -121900593 - MLT1D LTR MaLR -420 85 5 501 183 5 115 chrX 40699354 40699562 -121900368 + L1MB8 LINE L1 2506 2690 -3456 3150 219 78 44 chrX 40699570 40700516 -121899414 + L1MB8 LINE L1 3790 4767 -1379 3405 186 38 15 chrX 40700516 40701194 -121898736 + L1MB8 LINE L1 5472 6165 -13 339 273 0 45 chrX 40701327 40701437 -121898493 - MIR SINE MIR -2 260 156 298 266 111 12 chrX 40701429 40701524 -121898406 - MIR SINE MIR -99 109 6 * 2370 224 66 19 chrX 40701654 40702172 -121897758 - MLT1F LTR MaLR 0 542 1 2619 17 0 3 chrX 40702593 40702883 -121897047 + AluY SINE Alu 1 289 -22 339 197 0 0 chrX 40703050 40703111 -121896819 - L2 LINE L2 -2 3311 3251 260 290 53 30 chrX 40703653 40703784 -121896146 - L2 LINE L2 0 3272 3139 470 333 7 7 chrX 40703932 40704076 -121895854 + MIR SINE MIR 2 145 -117 5965 148 15 22 chrX 40704364 40705319 -121894611 - L1MA8 LINE L1 0 6291 5337 2705 82 35 16 chrX 40705319 40705687 -121894243 + THE1C LTR MaLR 1 375 0 5965 148 15 22 chrX 40705687 40705829 -121894101 - L1MA8 LINE L1 -954 5337 5196 4464 107 1 39 chrX 40705829 40706502 -121893428 - MER4D LTR ERV1 0 872 225 242 157 0 20 chrX 40706979 40707030 -121892900 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1589 132 32 12 chrX 40708306 40708556 -121891374 - MER4D LTR ERV1 -617 255 1 12658 145 24 28 chrX 40708556 40710160 -121889770 - L1MA8 LINE L1 -947 5199 3589 3038 137 9 0 chrX 40710160 40710583 -121889347 - MSTA LTR MaLR -1 427 1 12658 145 24 28 chrX 40710583 40710964 -121888966 - L1MA8 LINE L1 -2557 3589 3224 2369 98 3 9 chrX 40710964 40711279 -121888651 - AluSq SINE Alu 0 313 1 12658 145 24 28 chrX 40711279 40711631 -121888299 - L1MA8 LINE L1 -2922 3224 2872 232 233 133 0 chrX 40711856 40711916 -121888014 + LTR16C LTR ERVL 76 143 -348 1225 226 9 0 chrX 40711963 40712193 -121887737 + LTR16C LTR ERVL 257 488 -3 343 361 9 0 chrX 40712511 40712619 -121887311 + L2 LINE L2 3154 3262 -10 483 328 74 12 chrX 40712697 40712941 -121886989 - MIR SINE MIR -2 260 2 1650 210 133 26 chrX 40713037 40713466 -121886464 + MLT1D LTR MaLR 5 479 -26 1140 333 104 29 chrX 40713638 40714097 -121885833 - L3 LINE CR1 -1 1576 1153 1967 156 0 3 chrX 40714097 40714385 -121885545 + AluJo SINE Alu 1 287 -25 1140 333 104 29 chrX 40714385 40714720 -121885210 - L3 LINE CR1 -424 1153 722 356 252 136 39 chrX 40715720 40715875 -121884055 - MIR SINE MIR -42 220 51 200 310 14 28 chrX 40716113 40716184 -121883746 - L2 LINE L2 -4 3268 3199 439 223 91 25 chrX 40716228 40716349 -121883581 - MLT1G3 LTR MaLR 0 549 421 1853 200 118 35 chrX 40716359 40716810 -121883120 - MER77 LTR ERV1 -4 601 114 977 277 49 20 chrX 40716849 40717235 -121882695 - MLT1G3 LTR MaLR -128 467 5 2409 88 0 0 chrX 40717450 40717747 -121882183 + AluSc SINE Alu 1 297 -12 212 29 0 59 chrX 40717832 40717866 -121882064 + (CATA)n Simple_repeat Simple_repeat 2 33 0 5067 234 31 35 chrX 40718324 40718813 -121881117 + L1M4 LINE L1 2489 2978 -3168 1982 147 37 0 chrX 40718813 40719139 -121880791 + L1MB4 LINE L1 5837 6174 -6 5067 234 31 35 chrX 40719139 40720205 -121879725 + L1M4 LINE L1 2978 4038 -2108 1241 223 75 121 chrX 40720205 40720967 -121878963 - LTR8A LTR ERV1 0 727 1 1881 185 53 24 chrX 40720971 40721712 -121878218 + L1MDa LINE L1 1154 4660 -1880 2271 169 68 56 chrX 40722027 40722524 -121877406 + MLT1D LTR MaLR 3 505 0 1782 172 59 56 chrX 40723252 40723847 -121876083 + L1MC5 LINE L1 7264 7931 -30 2798 78 26 0 chrX 40724213 40724559 -121875371 + L1PA7 LINE L1 5800 6154 0 2272 139 109 24 chrX 40724635 40724940 -121874990 - LOR1b LTR ERV1 0 461 109 1964 133 69 39 chrX 40724940 40725302 -121874628 - THE1C LTR MaLR -2 373 1 2272 139 109 24 chrX 40725302 40725419 -121874511 - LOR1b LTR ERV1 -352 109 3 2213 109 3 0 chrX 40725818 40726111 -121873819 + AluSg SINE Alu 1 294 -16 4771 114 23 89 chrX 40726275 40727116 -121872814 - LTR1 LTR ERV1 0 785 1 638 213 67 13 chrX 40727296 40727446 -121872484 - MER5A DNA MER1_type -26 163 6 343 261 45 37 chrX 40727643 40727705 -121872225 - MIR SINE MIR -4 258 198 2347 102 3 0 chrX 40727705 40728009 -121871921 - AluSq SINE Alu -8 305 1 343 261 45 37 chrX 40728009 40728080 -121871850 - MIR SINE MIR -64 198 124 2478 82 0 0 chrX 40728124 40728428 -121871502 - AluSg SINE Alu -6 304 1 2205 126 101 130 chrX 40728601 40728737 -121871193 - LTR49 LTR ERV1 -13 550 412 1938 148 7 3 chrX 40728737 40729041 -121870889 + AluJo SINE Alu 1 305 -7 2205 126 101 130 chrX 40729041 40729511 -121870419 - LTR49 LTR ERV1 -151 412 1 201 94 0 0 chrX 40730111 40730143 -121869787 + (GTTTG)n Simple_repeat Simple_repeat 3 34 0 201 74 0 0 chrX 40731841 40731868 -121868062 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1072 62 23 0 chrX 40731869 40731998 -121867932 - AluY SINE Alu -179 132 1 1652 146 21 14 chrX 40732016 40732296 -121867634 - AluJo SINE Alu -30 282 1 863 168 17 23 chrX 40732343 40732516 -121867414 + MIR SINE MIR 91 262 0 2593 157 20 0 chrX 40732543 40732945 -121866985 + Tigger7 DNA MER2_type 1 410 -323 1952 240 73 23 chrX 40733063 40733620 -121866310 - MER77 LTR ERV1 -14 591 41 320 292 74 35 chrX 40733634 40733891 -121866039 + L1MEc LINE L1 1931 2197 -4199 2517 64 3 0 chrX 40733974 40734270 -121865660 - AluSp SINE Alu -16 297 1 2187 33 0 0 chrX 40734450 40734694 -121865236 + L1PA3 LINE L1 5912 6155 0 466 211 216 65 chrX 40735489 40735579 -121864351 + MIR SINE MIR 25 100 -162 1794 169 3 19 chrX 40735579 40735886 -121864044 - AluJo SINE Alu -10 302 1 466 211 216 65 chrX 40735886 40735980 -121863950 + MIR SINE MIR 100 237 -25 1474 254 30 68 chrX 40737123 40737681 -121862249 + MER34 LTR ERV1 1 537 -5 795 159 0 0 chrX 40737687 40737838 -121862092 + GA-rich Low_complexity Low_complexity 2 152 0 218 355 30 46 chrX 40738354 40738551 -121861379 + L2 LINE L2 2678 2871 -443 468 0 0 0 chrX 40739441 40739493 -121860437 + (TG)n Simple_repeat Simple_repeat 2 53 0 1205 218 54 78 chrX 40741611 40742005 -121857925 - MER39 LTR ERV1 0 707 324 2481 122 8 40 chrX 40742005 40742381 -121857549 - THE1B LTR MaLR 0 364 1 1205 218 54 78 chrX 40742381 40742449 -121857481 - MER39 LTR ERV1 -383 324 256 237 267 17 0 chrX 40742459 40742519 -121857411 - LTR48B LTR ERV1 -580 64 4 4177 119 47 64 chrX 40742860 40743030 -121856900 - LTR8A LTR ERV1 0 727 556 2226 101 3 10 chrX 40743030 40743326 -121856604 - AluSg1 SINE Alu -15 294 1 4177 119 47 64 chrX 40743326 40743894 -121856036 - LTR8A LTR ERV1 -171 556 1 933 184 160 85 chrX 40743904 40744376 -121855554 - MER34C LTR ERV1 -36 751 37 1785 104 0 0 chrX 40745761 40745992 -121853938 + AluSg/x SINE Alu 66 296 -16 1058 177 146 81 chrX 40746029 40746413 -121853517 + LTR37A LTR ERV1 18 426 0 796 230 97 90 chrX 40747801 40748335 -121851595 - L1MC4 LINE L1 0 8042 7505 1889 139 7 42 chrX 40748383 40748692 -121851238 + MLT1C LTR MaLR 5 302 -165 500 208 162 63 chrX 40748700 40749085 -121850845 + MER34B LTR ERV1 5 520 -65 584 153 99 54 chrX 40749101 40749139 -121850791 - FLAM_A SINE Alu -190 121 86 3493 193 8 69 chrX 40749139 40749874 -121850056 - LTR8 LTR ERV1 -1 690 1 584 153 99 54 chrX 40749874 40749946 -121849984 - FLAM_A SINE Alu -225 86 6 934 184 6 12 chrX 40750017 40750185 -121849745 + MLT1C LTR MaLR 301 467 0 756 194 65 51 chrX 40750185 40750399 -121849531 - L1MC5 LINE L1 -391 7417 7215 836 185 7 0 chrX 40750406 40750541 -121849389 + AluJo SINE Alu 2 137 -175 1635 229 44 38 chrX 40750547 40751226 -121848704 - L1MC4 LINE L1 -730 7231 6621 2563 271 62 22 chrX 40751227 40751969 -121847961 + MER45C DNA AcHobo 2 777 -176 1411 104 5 9 chrX 40751974 40752186 -121847744 - MER6 DNA MER2_type -1 864 654 2902 229 83 23 chrX 40752193 40753089 -121846841 + L1PB1 LINE L1 6 954 -5909 15298 192 20 24 chrX 40753089 40754814 -121845116 + L1PB1 LINE L1 2228 3958 -2909 2215 119 0 10 chrX 40754814 40755117 -121844813 - AluSx SINE Alu -11 301 2 15298 192 20 24 chrX 40755117 40755128 -121844802 + L1PB1 LINE L1 3958 3968 -2899 273 29 0 0 chrX 40755128 40755162 -121844768 + (CA)n Simple_repeat Simple_repeat 2 35 0 15298 192 20 24 chrX 40755162 40757280 -121842650 + L1PB1 LINE L1 3968 6093 -774 2372 96 7 0 chrX 40757280 40757583 -121842347 + AluSc SINE Alu 1 305 -4 15298 192 20 24 chrX 40757583 40757647 -121842283 + L1PB1 LINE L1 6093 6156 -711 2103 88 10 33 chrX 40757647 40757954 -121841976 + AluY SINE Alu 1 300 -11 15298 192 20 24 chrX 40757954 40758315 -121841615 + L1PB1 LINE L1 6156 6507 -360 423 0 0 0 chrX 40758315 40758362 -121841568 + (TA)n Simple_repeat Simple_repeat 2 48 0 15298 192 20 24 chrX 40758362 40758721 -121841209 + L1PB1 LINE L1 6507 6866 -1 918 143 0 19 chrX 40758733 40758894 -121841036 - MER6 DNA MER2_type -194 671 514 2225 185 60 137 chrX 40758894 40759391 -121840539 - LTR8A LTR ERV1 0 727 312 2382 88 7 0 chrX 40759391 40759699 -121840231 + AluSg SINE Alu 1 310 0 2225 185 60 137 chrX 40759699 40759989 -121839941 - LTR8A LTR ERV1 -415 312 1 * 3008 189 17 15 chrX 40759989 40760454 -121839476 - MER6 DNA MER2_type -345 520 52 3291 169 78 3 chrX 40760454 40761033 -121838897 - LTR26E LTR ERV1 0 622 1 3008 189 17 15 chrX 40761033 40761086 -121838844 - MER6 DNA MER2_type -813 52 1 1157 188 58 49 chrX 40761182 40761507 -121838423 + MER45B DNA AcHobo 713 1040 0 2948 236 116 19 chrX 40761593 40762671 -121837259 - L1MC4a LINE L1 -1371 6437 5255 907 256 120 81 chrX 40762828 40763446 -121836484 + L1MD1 LINE L1 1 642 -5898 300 332 57 81 chrX 40763922 40764169 -121835761 + L1MD1 LINE L1 475 715 -5825 2198 141 82 24 chrX 40764169 40764630 -121835300 + L1MD1 LINE L1 985 1472 -5071 2044 204 41 59 chrX 40764994 40765659 -121834271 + L1MD1 LINE L1 1435 2087 -4453 * 7278 239 59 21 chrX 40765658 40766549 -121833381 + L1MD1 LINE L1 3467 4323 -2430 1536 179 14 17 chrX 40766549 40766840 -121833090 - AluJb SINE Alu -22 290 1 7278 239 59 21 chrX 40766840 40768263 -121831667 + L1MD1 LINE L1 4323 5884 -869 2204 99 0 16 chrX 40768263 40768567 -121831363 + AluSq SINE Alu 1 299 -14 7278 239 59 21 chrX 40768567 40768720 -121831210 + L1MD1 LINE L1 5884 6030 -723 2378 137 3 8 chrX 40768732 40769090 -121830840 - MLT1A1 LTR MaLR 0 365 10 2631 155 12 0 chrX 40769099 40769512 -121830418 - MLT1A1-int LTR MaLR 0 1735 1318 4518 198 60 40 chrX 40769636 40770623 -121829307 - MLT1A1-int LTR MaLR -725 1010 5 2848 194 7 61 chrX 40770627 40770690 -121829240 - MLT2B3 LTR ERVL 0 554 489 1445 179 42 28 chrX 40770690 40770975 -121828955 - AluJb SINE Alu -23 289 1 2848 194 7 61 chrX 40770975 40771497 -121828433 - MLT2B3 LTR ERVL -65 489 1 13827 123 23 2 chrX 40771497 40773484 -121826446 - ERVL-B3 LTR ERVL -7 5757 3730 788 165 165 6 chrX 40773486 40773662 -121826268 + L1MD1 LINE L1 6074 6277 -476 907 204 0 27 chrX 40773664 40773850 -121826080 + L1MD1 LINE L1 6338 6518 -118 1751 216 8 16 chrX 40773850 40774220 -121825710 - MLT1A2 LTR MaLR 0 374 8 870 172 48 88 chrX 40774240 40774355 -121825575 - L1MB4 LINE L1 -4 6176 6058 2495 78 3 0 chrX 40774355 40774662 -121825268 - AluSp SINE Alu -5 308 1 870 172 48 88 chrX 40774662 40774796 -121825134 - L1MB4 LINE L1 -122 6058 5937 704 156 16 16 chrX 40774795 40774923 -121825007 + L1MD1 LINE L1 6505 6632 -4 * 3864 127 12 46 chrX 40774965 40775088 -121824842 - Tigger1 DNA MER2_type 0 2418 2292 584 173 135 0 chrX 40775088 40775192 -121824738 + FLAM_C SINE Alu 1 118 -15 3864 127 12 46 chrX 40775192 40775724 -121824206 - Tigger1 DNA MER2_type -126 2292 1785 7474 127 17 13 chrX 40775824 40777781 -121822149 - L1MA2 LINE L1 -12 7711 5745 1928 141 3 28 chrX 40777781 40778101 -121821829 - AluJb SINE Alu 0 312 1 7474 127 17 13 chrX 40778101 40778391 -121821539 - L1MA2 LINE L1 -1978 5745 5458 2146 196 28 8 chrX 40778387 40778856 -121821074 - L1MA2 LINE L1 -3542 4023 3546 * 4777 46 3 36 chrX 40778876 40779480 -121820450 - LTR10C LTR ERV1 -7 584 1 4909 99 42 42 chrX 40779480 40779750 -121820180 - L1MA2 LINE L1 -3994 3571 3302 186 43 0 0 chrX 40779750 40779773 -121820157 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4909 99 42 42 chrX 40779773 40779892 -121820038 - L1MA2 LINE L1 -4263 3302 3184 2177 105 28 0 chrX 40779892 40780178 -121819752 - AluSg SINE Alu -16 294 1 4909 99 42 42 chrX 40780178 40780464 -121819466 - L1MA2 LINE L1 -4381 3184 2892 2099 108 50 0 chrX 40780464 40780761 -121819169 - AluSx SINE Alu 0 312 1 4909 99 42 42 chrX 40780761 40780897 -121819033 - L1MA2 LINE L1 -4672 2893 2758 1795 132 4 0 chrX 40780897 40781162 -121818768 - AluSx SINE Alu -8 304 39 2324 110 0 0 chrX 40781168 40781469 -121818461 - AluSq SINE Alu -12 301 1 470 163 0 0 chrX 40781475 40781555 -121818375 - L1ME LINE L1 -5094 976 897 5105 98 16 33 chrX 40781557 40781787 -121818143 - Tigger1 DNA MER2_type -1172 1246 1014 2210 123 0 3 chrX 40781787 40782096 -121817834 + AluSp SINE Alu 6 313 0 5105 98 16 33 chrX 40782096 40782631 -121817299 - Tigger1 DNA MER2_type -1404 1014 494 332 224 0 0 chrX 40782648 40782715 -121817215 - Tigger1 DNA MER2_type -2351 67 1 2259 117 0 0 chrX 40782786 40783085 -121816845 - AluSx SINE Alu -13 299 1 2827 167 33 8 chrX 40783086 40783577 -121816353 - Tigger1 DNA MER2_type -1915 503 1 1338 167 0 5 chrX 40783651 40783861 -121816069 - MER3 DNA MER1_type 0 209 1 2260 107 0 7 chrX 40783865 40784175 -121815755 + AluSg1 SINE Alu 1 308 -1 309 283 42 78 chrX 40784218 40784384 -121815546 + L1MDa LINE L1 2401 2560 -3980 2028 120 46 0 chrX 40784487 40784770 -121815160 + AluSg SINE Alu 1 296 -14 2151 92 0 7 chrX 40785522 40785803 -121814127 - AluSx SINE Alu -33 279 1 443 289 18 0 chrX 40785987 40786101 -121813829 + L2 LINE L2 2912 3027 -286 945 230 42 82 chrX 40786200 40786407 -121813523 + L2 LINE L2 2950 3137 -176 2491 169 36 65 chrX 40786407 40786932 -121812998 + LTR54 LTR ERV1 1 510 0 945 230 42 82 chrX 40786932 40787103 -121812827 + L2 LINE L2 3137 3313 0 380 271 57 64 chrX 40787285 40787565 -121812365 + L1MDa LINE L1 3096 3373 -3167 1626 106 12 27 chrX 40787637 40787707 -121812223 - MER41A LTR ERV1 0 554 484 2192 108 7 0 chrX 40787707 40788032 -121811898 + AluSx SINE Alu 1 312 0 1626 106 12 27 chrX 40788032 40788217 -121811713 - MER41A LTR ERV1 -70 484 303 1669 158 25 0 chrX 40788716 40788995 -121810935 + AluSq SINE Alu 24 309 -4 531 239 37 101 chrX 40789860 40790037 -121809893 + L1MEc LINE L1 1704 1891 -4505 2251 108 3 0 chrX 40790037 40790333 -121809597 - AluSx SINE Alu -15 297 1 531 239 37 101 chrX 40790333 40790560 -121809370 + L1MEc LINE L1 1891 2082 -4314 2321 83 3 0 chrX 40790704 40790994 -121808936 + AluSx SINE Alu 1 291 -21 1353 221 59 27 chrX 40791072 40791175 -121808755 + L1MB7 LINE L1 4665 4763 -1383 1938 106 7 0 chrX 40791175 40791449 -121808481 + L1MA8 LINE L1 6012 6287 -4 1353 221 59 27 chrX 40791449 40791767 -121808163 + L1MB7 LINE L1 4763 5069 -1077 3506 137 14 78 chrX 40791767 40791987 -121807943 + MLT2B3 LTR ERVL 1 234 -320 294 29 0 0 chrX 40791987 40792022 -121807908 + (TC)n Simple_repeat Simple_repeat 2 36 0 3506 137 14 78 chrX 40792022 40792393 -121807537 + MLT2B3 LTR ERVL 234 554 0 4612 231 19 38 chrX 40792397 40793488 -121806442 + MLT-int LTR MaLR 5 1075 -660 2536 164 28 14 chrX 40793498 40794012 -121805918 - LTR27 LTR ERV1 -11 490 2 3090 227 30 0 chrX 40794012 40794606 -121805324 + MSTC-int LTR MaLR 1124 1735 0 1065 199 137 59 chrX 40794606 40794963 -121804967 + MSTC LTR MaLR 1 385 -43 301 83 125 0 chrX 40796750 40796798 -121803132 + MSTC LTR MaLR 403 456 -1 3347 185 90 41 chrX 40796799 40796930 -121803000 + L1MB7 LINE L1 5062 5185 -999 2275 123 0 0 chrX 40796930 40797239 -121802691 + AluSq SINE Alu 1 309 -4 3347 185 90 41 chrX 40797239 40797782 -121802148 + L1MB7 LINE L1 5185 5700 -484 1771 171 0 23 chrX 40797782 40798081 -121801849 + AluJb SINE Alu 1 292 -20 3347 185 90 41 chrX 40798081 40798323 -121801607 + L1MB7 LINE L1 5700 5929 -255 2338 93 3 0 chrX 40798323 40798614 -121801316 - AluSp SINE Alu -21 292 1 3347 185 90 41 chrX 40798614 40798750 -121801180 + L1MB7 LINE L1 5929 6184 0 405 0 0 0 chrX 40798975 40799020 -121800910 + (TA)n Simple_repeat Simple_repeat 2 46 0 45366 36 2 1 chrX 40799023 40805167 -121794763 + L1PA4 LINE L1 2 6147 -8 212 0 36 0 chrX 40805175 40805203 -121794727 + (TA)n Simple_repeat Simple_repeat 2 30 0 196 256 0 0 chrX 40806309 40806352 -121793578 + MIR SINE MIR 216 258 -4 595 321 91 29 chrX 40806884 40807224 -121792706 + L2 LINE L2 2912 3272 0 2251 89 14 7 chrX 40808119 40808411 -121791519 - AluSc SINE Alu -15 294 1 2177 77 73 0 chrX 40808684 40808971 -121790959 - AluSx SINE Alu -4 308 1 27 0 0 0 chrX 40811494 40811521 -121788409 + AT_rich Low_complexity Low_complexity 1 27 0 1359 207 192 114 chrX 40811742 40812540 -121787390 - L2 LINE L2 -18 3295 2273 296 248 197 8 chrX 40812540 40812657 -121787273 - L1ME3A LINE L1 -4 6166 6028 1359 207 192 114 chrX 40812657 40812922 -121787008 - L2 LINE L2 -1040 2273 2030 195 286 107 54 chrX 40812937 40813049 -121786881 - L2 LINE L2 -33 3239 3122 2331 85 3 3 chrX 40813138 40813432 -121786498 - AluSp SINE Alu -19 294 1 220 347 13 0 chrX 40813474 40813549 -121786381 - L2 LINE L2 -217 3055 2980 1487 213 68 43 chrX 40813559 40813953 -121785977 - MLT1C LTR MaLR 0 467 64 246 164 229 0 chrX 40814000 40814061 -121785869 - MLT1C LTR MaLR -385 82 8 865 248 39 19 chrX 40814100 40814306 -121785624 - MER63A DNA MER1_type 0 210 1 248 348 0 77 chrX 40814358 40814431 -121785499 - L2 LINE L2 -467 2847 2791 1787 167 3 13 chrX 40814431 40814731 -121785199 - AluJb SINE Alu -15 297 1 248 348 0 77 chrX 40814731 40814812 -121785118 - L2 LINE L2 -523 2791 2705 2303 101 149 11 chrX 40814994 40815370 -121784560 + MSTA LTR MaLR 1 428 0 312 241 172 0 chrX 40815430 40815546 -121784384 - L2 LINE L2 -3 3310 3175 2095 208 96 47 chrX 40815831 40816426 -121783504 + MLT1E3 LTR MaLR 1 624 0 2252 103 0 7 chrX 40817432 40817733 -121782197 - AluSx SINE Alu -12 300 2 7047 43 17 36 chrX 40818015 40819562 -121780368 + SVA Other Other 6 1408 0 2319 90 0 7 chrX 40819819 40820119 -121779811 - AluSc SINE Alu -11 298 1 247 83 28 0 chrX 40820583 40820619 -121779311 + Alu SINE Alu 1 37 -263 1218 157 66 138 chrX 40820719 40821024 -121778906 - LTR8 LTR ERV1 -435 256 1 238 297 54 40 chrX 40821031 40821105 -121778825 + L2 LINE L2 3189 3263 -9 187 344 145 0 chrX 40821121 40821252 -121778678 + MIR SINE MIR 23 172 -90 24 67 0 0 chrX 40821438 40821483 -121778447 + AT_rich Low_complexity Low_complexity 1 45 0 357 93 0 0 chrX 40821891 40821945 -121777985 + (TG)n Simple_repeat Simple_repeat 2 55 0 1227 179 119 112 chrX 40822930 40823476 -121776454 - MER34C LTR ERV1 0 585 36 235 287 19 83 chrX 40823874 40823982 -121775948 - MLT2E LTR ERVL -490 138 38 364 217 0 0 chrX 40824340 40824409 -121775521 - MER92C LTR ERV1 -2 552 484 418 251 30 84 chrX 40824501 40824668 -121775262 - MER92C LTR ERV1 -386 168 11 1592 193 143 48 chrX 40824794 40825214 -121774716 + MER34C LTR ERV1 1 460 -125 297 160 47 6 chrX 40825214 40825383 -121774547 + (TA)n Simple_repeat Simple_repeat 1 176 0 685 46 73 0 chrX 40825485 40825594 -121774336 - MER41B LTR ERV1 -518 117 1 244 197 0 15 chrX 40825682 40825748 -121774182 - L1M4 LINE L1 -870 5276 5212 * 256 301 92 50 chrX 40825743 40826006 -121773924 + L1M4 LINE L1 3413 3664 -2482 249 108 0 0 chrX 40826006 40826043 -121773887 + (CA)n Simple_repeat Simple_repeat 2 38 0 256 301 92 50 chrX 40826043 40826263 -121773667 + L1M4 LINE L1 3664 3926 -2220 2079 107 4 4 chrX 40826263 40826544 -121773386 + AluSx SINE Alu 3 283 -29 256 301 92 50 chrX 40826544 40826638 -121773292 + L1M4 LINE L1 3926 4015 -2131 6198 102 40 28 chrX 40826915 40826944 -121772986 - Tigger3b DNA MER2_type -1799 1229 1202 2138 100 0 0 chrX 40826944 40827223 -121772707 + AluSg SINE Alu 1 279 -31 414 0 0 0 chrX 40827223 40827269 -121772661 + (CA)n Simple_repeat Simple_repeat 1 46 0 6198 102 40 28 chrX 40827269 40827706 -121772224 - Tigger3b DNA MER2_type -1826 1202 771 1765 169 10 20 chrX 40827706 40828002 -121771928 + AluJo SINE Alu 3 295 -17 2307 81 0 3 chrX 40828002 40828300 -121771630 + AluSg SINE Alu 1 297 -13 6198 102 40 28 chrX 40828300 40828815 -121771115 - Tigger3b DNA MER2_type -2256 772 234 238 216 40 54 chrX 40830293 40830367 -121769563 + L2 LINE L2 3199 3271 -1 204 125 0 0 chrX 40832184 40832216 -121767714 + (T)n Simple_repeat Simple_repeat 1 32 0 452 254 24 104 chrX 40833255 40833479 -121766451 - MIR SINE MIR -15 247 37 21 0 0 0 chrX 40833758 40833779 -121766151 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 40833824 40833847 -121766083 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chrX 40833997 40834023 -121765907 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2137 115 0 3 chrX 40834025 40834313 -121765617 - AluSg SINE Alu -23 287 1 645 67 86 67 chrX 40834321 40834426 -121765504 - L1PA8 LINE L1 -11 6161 6055 1081 54 15 0 chrX 40834451 40834581 -121765349 - AluYb8 SINE Alu -186 132 1 795 124 8 0 chrX 40834581 40834710 -121765220 - L1PA8 LINE L1 -104 6068 5939 2579 87 0 0 chrX 40834784 40835096 -121764834 - AluSx SINE Alu 0 312 1 183 253 51 158 chrX 40835246 40835538 -121764392 + L2 LINE L2 2623 2883 -431 205 246 140 18 chrX 40835623 40835680 -121764250 + L2 LINE L2 3196 3259 -54 2589 139 99 9 chrX 40835705 40836128 -121763802 - LOR1b LTR ERV1 0 461 1 24 0 0 0 chrX 40836540 40836564 -121763366 + AT_rich Low_complexity Low_complexity 1 24 0 534 122 0 0 chrX 40836564 40836638 -121763292 - MER58A DNA MER1_type 0 224 151 1885 125 0 18 chrX 40836663 40836942 -121762988 + AluSx SINE Alu 1 274 -38 1030 68 34 17 chrX 40836948 40837125 -121762805 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 351 246 24 0 chrX 40837139 40837265 -121762665 + GA-rich Low_complexity Low_complexity 3 131 0 194 61 0 30 chrX 40837265 40837298 -121762632 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 496 195 0 0 chrX 40837305 40837382 -121762548 - MER58A DNA MER1_type -26 81 5 607 247 126 27 chrX 40837872 40838095 -121761835 + LTR37A LTR ERV1 1 245 -181 435 238 0 10 chrX 40838150 40838251 -121761679 + MER31-int LTR ERV1 4370 4469 -467 259 273 0 39 chrX 40838319 40838396 -121761534 + MER31-int LTR ERV1 4482 4555 -381 435 177 79 0 chrX 40838956 40839035 -121760895 - MER34C LTR ERV1 0 585 467 2092 102 64 7 chrX 40839035 40839330 -121760600 + AluSx SINE Alu 1 312 0 435 177 79 0 chrX 40839330 40839354 -121760576 - MER34C LTR ERV1 -118 467 446 3016 140 45 2 chrX 40839354 40839819 -121760111 + MER31A LTR ERV1 1 485 0 1668 157 44 4 chrX 40839827 40840101 -121759829 + AluJo SINE Alu 1 285 -27 520 76 47 35 chrX 40840101 40840272 -121759658 + (TA)n Simple_repeat Simple_repeat 1 173 0 24 0 0 0 chrX 40840287 40840311 -121759619 + AT_rich Low_complexity Low_complexity 1 24 0 485 90 62 29 chrX 40840327 40841094 -121758836 + (TA)n Simple_repeat Simple_repeat 1 792 0 2675 128 23 0 chrX 40841675 40842067 -121757863 - MSTA LTR MaLR -27 401 1 5880 229 86 25 chrX 40842067 40843493 -121756437 + MSTD-int LTR MaLR 223 1735 0 2100 157 93 6 chrX 40843493 40843857 -121756073 + MSTD LTR MaLR 1 396 0 427 353 24 0 chrX 40844519 40844686 -121755244 - MER117 DNA MER1_type -26 171 1 2131 116 0 26 chrX 40847626 40847915 -121752015 + AluSx SINE Alu 1 296 -16 180 97 0 0 chrX 40847915 40847946 -121751984 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 189 107 0 0 chrX 40847949 40847977 -121751953 + (TA)n Simple_repeat Simple_repeat 1 28 0 2131 116 0 26 chrX 40847977 40847993 -121751937 + AluSx SINE Alu 298 302 -10 1980 151 46 6 chrX 40848119 40848443 -121751487 - MER1B DNA MER1_type 0 337 1 1983 146 9 27 chrX 40848443 40848771 -121751159 - MLT2C1 LTR ERVL -74 323 2 2219 160 75 23 chrX 40848772 40849215 -121750715 - ERVL-C1 LTR ERVL -8 5756 5291 403 219 10 31 chrX 40849316 40849412 -121750518 + MER34 LTR ERV1 448 541 -1 605 275 51 83 chrX 40849412 40849522 -121750408 - L2 LINE L2 -170 3143 3031 2415 100 0 0 chrX 40849522 40849832 -121750098 - AluSp SINE Alu -3 310 1 605 275 51 83 chrX 40849832 40850075 -121749855 - L2 LINE L2 -282 3031 2782 1063 189 27 5 chrX 40850075 40850260 -121749670 - MER5A DNA MER1_type 0 189 1 605 275 51 83 chrX 40850260 40850358 -121749572 - L2 LINE L2 -531 2782 2711 696 271 71 80 chrX 40850358 40850905 -121749025 + MER34 LTR ERV1 1 542 0 605 275 51 83 chrX 40850905 40850974 -121748956 - L2 LINE L2 -602 2711 2641 1918 192 27 64 chrX 40851037 40851521 -121748409 - MER31B LTR ERV1 0 466 1 189 0 0 0 chrX 40851650 40851671 -121748259 + (CAATT)n Simple_repeat Simple_repeat 4 24 0 1722 166 74 67 chrX 40851765 40852210 -121747720 - LTR8A LTR ERV1 0 727 280 1712 151 23 4 chrX 40852329 40852588 -121747342 - ERVL-C1 LTR ERVL -700 5064 4801 602 226 0 16 chrX 40852588 40852712 -121747218 - MLT1D-int LTR MaLR -645 726 605 3142 200 12 0 chrX 40852788 40853387 -121746543 - MLT1D-int LTR MaLR -765 606 1 1500 212 157 20 chrX 40853389 40853828 -121746102 - MLT1D LTR MaLR -2 503 5 404 256 45 19 chrX 40853829 40853985 -121745945 - L1MEc LINE L1 -3802 2413 2254 369 324 38 21 chrX 40853996 40854369 -121745561 - L1MEc LINE L1 -4144 2252 1874 367 283 157 10 chrX 40854393 40854591 -121745339 - L1MEc LINE L1 -4585 1811 1585 410 267 123 79 chrX 40854638 40854694 -121745236 + MLT1J LTR MaLR 201 253 -258 1892 137 25 0 chrX 40854694 40854979 -121744951 - AluJo SINE Alu -20 292 1 410 267 123 79 chrX 40854979 40855318 -121744612 + MLT1J LTR MaLR 253 511 0 1050 249 24 69 chrX 40855405 40855794 -121744136 + L1MC4 LINE L1 6643 7110 -932 949 271 14 0 chrX 40855822 40856043 -121743887 - LTR16A LTR ERVL -24 426 203 1806 136 5 136 chrX 40856044 40856442 -121743488 + MER7A DNA MER2_type 2 345 -1 291 318 51 75 chrX 40856442 40856655 -121743275 - LTR16A1 LTR ERVL -249 208 1 544 249 50 36 chrX 40856663 40856884 -121743046 + L1MC4 LINE L1 7113 7336 -706 598 189 59 46 chrX 40856946 40857099 -121742831 + L1MC5 LINE L1 7311 7465 -496 1789 158 0 24 chrX 40857153 40857451 -121742479 - AluJo SINE Alu -16 296 6 395 127 0 0 chrX 40857699 40857754 -121742176 - AluSp SINE Alu -106 197 143 521 213 115 55 chrX 40857849 40858032 -121741898 + L2 LINE L2 3118 3311 -2 2229 101 0 7 chrX 40858340 40858637 -121741293 - AluSx SINE Alu -17 295 1 726 147 0 120 chrX 40858715 40858842 -121741088 - FLAM_A SINE Alu -170 132 24 2219 109 0 7 chrX 40858842 40859145 -121740785 + AluSx SINE Alu 1 301 -11 726 147 0 120 chrX 40859145 40859167 -121740763 - FLAM_A SINE Alu -278 24 1 1743 118 0 0 chrX 40859842 40860079 -121739851 + AluSx SINE Alu 1 237 -75 1005 208 86 76 chrX 40860423 40860602 -121739328 - L1MC5 LINE L1 -44 7917 7741 695 51 0 0 chrX 40860602 40860680 -121739250 + MADE1 DNA Mariner 1 78 -2 1005 208 86 76 chrX 40860680 40860919 -121739011 - L1MC5 LINE L1 -220 7741 7495 1541 175 4 8 chrX 40861029 40861281 -121738649 - AluJo SINE Alu -12 300 50 934 112 8 15 chrX 40861284 40861418 -121738512 - AluJo/FLAM SINE Alu -179 133 1 273 299 0 0 chrX 40862565 40862632 -121737298 - L2 LINE L2 -1 3271 3205 185 319 28 99 chrX 40862710 40862851 -121737079 - L2 LINE L2 -242 3030 2900 273 265 188 33 chrX 40863053 40863234 -121736696 - L1MC4a LINE L1 -1862 5946 5738 226 121 0 0 chrX 40863452 40863485 -121736445 - tRNA-Glu-GAG tRNA tRNA -39 36 4 5723 137 43 3 chrX 40863495 40864591 -121735339 + L1PA16 LINE L1 5024 6157 -9 388 195 0 35 chrX 40864599 40864686 -121735244 + L1MEd LINE L1 977 1060 -5059 324 299 110 7 chrX 40864689 40864843 -121735087 + L1ME3A LINE L1 5782 5951 -219 2423 87 0 3 chrX 40865267 40865577 -121734353 - AluSg SINE Alu -1 309 1 754 194 0 0 chrX 40866143 40866272 -121733658 - MLT1B LTR MaLR 0 390 262 1767 151 53 7 chrX 40866765 40867049 -121732881 - AluJo SINE Alu -15 297 1 1560 84 72 34 chrX 40868363 40868441 -121731489 - L1MA8 LINE L1 -5 6286 6212 9324 55 2 0 chrX 40868441 40869508 -121730422 - MER11C LTR ERVK -2 1069 1 1560 84 72 34 chrX 40869508 40869692 -121730238 - L1MA8 LINE L1 -79 6212 6014 279 328 17 17 chrX 40869736 40869852 -121730078 + L2 LINE L2 2404 2519 -795 246 161 0 54 chrX 40869842 40869898 -121730032 - L2 LINE L2 -677 2637 2585 * 845 260 0 35 chrX 40869921 40870148 -121729782 + MIR SINE MIR 28 246 -16 458 244 122 0 chrX 40870148 40870279 -121729651 + L2 LINE L2 3164 3310 -3 2165 100 0 0 chrX 40870597 40870878 -121729052 + AluSx SINE Alu 1 281 -31 377 135 0 0 chrX 40870826 40870878 -121729052 + AluS SINE Alu 228 320 0 283 73 0 0 chrX 40870878 40870919 -121729011 + (TAAA)n Simple_repeat Simple_repeat 4 72 0 546 252 34 113 chrX 40871070 40871336 -121728594 - L2 LINE L2 -12 3260 3016 4084 165 105 21 chrX 40871656 40872574 -121727356 - L1MB7 LINE L1 0 6184 5179 832 158 0 16 chrX 40872574 40872701 -121727229 - FRAM SINE Alu -11 165 41 1259 175 66 4 chrX 40872703 40872988 -121726942 - L1PA16 LINE L1 0 6163 5837 690 114 0 0 chrX 40872989 40873077 -121726853 - FLAM SINE Alu -18 125 38 3068 212 28 41 chrX 40873077 40873835 -121726095 - L1MB7 LINE L1 -961 5185 4438 344 268 159 43 chrX 40873974 40874112 -121725818 + L3 LINE CR1 1321 1474 -103 238 343 22 30 chrX 40874154 40874288 -121725642 + MER5A DNA MER1_type 31 163 -26 212 302 0 48 chrX 40875093 40875156 -121724774 - L3 LINE CR1 -932 645 586 670 241 98 20 chrX 40875658 40875861 -121724069 + L1M4b LINE L1 11 229 -6630 3377 198 53 41 chrX 40875946 40877283 -121722647 + L1PA8 LINE L1 4822 6172 0 1989 239 102 9 chrX 40877285 40877668 -121722262 + L1MD2 LINE L1 5551 6000 -359 261 0 0 0 chrX 40877668 40877697 -121722233 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1989 239 102 9 chrX 40877697 40877853 -121722077 + L1MD2 LINE L1 6000 6140 -219 3927 185 69 30 chrX 40877929 40878266 -121721664 + L1MB7 LINE L1 5188 5510 -674 2498 73 3 0 chrX 40878266 40878567 -121721363 - AluSp SINE Alu -11 302 1 3927 185 69 30 chrX 40878567 40879192 -121720738 + L1MB7 LINE L1 5510 6180 -4 2419 98 0 0 chrX 40882378 40882685 -121717245 + AluSx SINE Alu 1 307 -5 2137 100 3 55 chrX 40883772 40884083 -121715847 + AluSx SINE Alu 1 295 -17 297 280 160 29 chrX 40885804 40885979 -121713951 + MIR3 SINE MIR 2 199 -9 2510 74 0 0 chrX 40886517 40886814 -121713116 - AluSg SINE Alu -13 297 1 4034 175 87 5 chrX 40887367 40888148 -121711782 + L1MD2 LINE L1 5514 6358 -1 1132 166 20 20 chrX 40888229 40888428 -121711502 + AluJo SINE Alu 84 282 -30 351 0 0 0 chrX 40888431 40888470 -121711460 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1221 207 58 126 chrX 40888700 40889195 -121710735 + L1M4 LINE L1 3222 3668 -2478 217 287 49 57 chrX 40889898 40890020 -121709910 - MIR SINE MIR -122 140 20 4702 141 45 90 chrX 40890448 40891416 -121708514 - MER21A LTR ERV1 -6 925 1 531 0 0 0 chrX 40891762 40891821 -121708109 + (CA)n Simple_repeat Simple_repeat 2 60 0 240 86 0 0 chrX 40891825 40891860 -121708070 + (TC)n Simple_repeat Simple_repeat 1 35 0 305 354 67 20 chrX 40892247 40892442 -121707488 + MIR SINE MIR 9 212 -50 252 0 0 0 chrX 40893499 40893527 -121706403 + (TG)n Simple_repeat Simple_repeat 2 29 0 263 239 0 45 chrX 40894425 40894450 -121705480 + MER3 DNA MER1_type 27 48 -161 406 203 0 0 chrX 40894450 40894524 -121705406 - MER3 DNA MER1_type -1 208 135 3102 143 105 140 chrX 40894524 40894915 -121705015 + L1MC3 LINE L1 6705 7108 -677 294 207 0 117 chrX 40894915 40895026 -121704904 + MLT1F1 LTR MaLR 25 122 -445 3102 143 105 140 chrX 40895026 40895314 -121704616 + L1MC3 LINE L1 7108 7458 -327 2387 56 0 30 chrX 40895314 40895616 -121704314 + AluY SINE Alu 1 293 -18 3102 143 105 140 chrX 40895616 40895770 -121704160 + L1MC3 LINE L1 7458 7616 -169 226 316 76 0 chrX 40896064 40896143 -121703787 + MIR SINE MIR 165 249 -13 261 119 0 0 chrX 40896359 40896401 -121703529 + (CA)n Simple_repeat Simple_repeat 1 42 0 1047 128 7 0 chrX 40897447 40897595 -121702335 - AluJb SINE Alu -6 306 158 2406 126 10 42 chrX 40897645 40897700 -121702230 - L1MB2 LINE L1 0 6171 6116 2428 77 0 3 chrX 40897700 40897997 -121701933 - AluY SINE Alu -15 296 1 2406 126 10 42 chrX 40897997 40898347 -121701583 - L1MB2 LINE L1 -55 6116 5779 2041 100 18 7 chrX 40898350 40898655 -121701275 - AluSp SINE Alu 0 308 1 1015 178 11 11 chrX 40899257 40899448 -121700482 + MER3 DNA MER1_type 19 209 0 278 224 0 0 chrX 40899406 40899455 -121700475 - MER3 DNA MER1_type -120 89 41 * 554 305 64 5 chrX 40899584 40899771 -121700159 + MIR SINE MIR 17 214 -48 1325 174 0 9 chrX 40900559 40900777 -121699153 + AluJo SINE Alu 86 301 -11 353 139 62 5 chrX 40901057 40901136 -121698794 + Alu SINE Alu 237 302 0 284 106 21 0 chrX 40901250 40901297 -121698633 - L1MB4 LINE L1 0 6180 6133 475 62 0 0 chrX 40901299 40901363 -121698567 - Alu SINE Alu -4 305 242 946 169 17 34 chrX 40901969 40902146 -121697784 + FRAM SINE Alu 1 174 -2 255 247 108 88 chrX 40902191 40902385 -121697545 + L1ME3 LINE L1 5918 6115 -47 296 213 2 25 chrX 40902405 40902485 -121697445 - MLT1L LTR MaLR 0 615 431 238 179 0 0 chrX 40902666 40902705 -121697225 - LTR67 LTR ERVL -424 133 95 2300 83 7 0 chrX 40902915 40903204 -121696726 - AluSp SINE Alu -22 291 1 2419 97 3 0 chrX 40903215 40903526 -121696404 - AluSq SINE Alu -1 312 1 2384 99 3 0 chrX 40903527 40903831 -121696099 - AluSq SINE Alu -8 305 1 25 51 0 0 chrX 40905455 40905494 -121694436 + AT_rich Low_complexity Low_complexity 1 39 0 44193 30 22 1 chrX 40905497 40911525 -121688405 - L1PA3 LINE L1 0 6155 1 274 216 14 0 chrX 40911525 40911599 -121688331 - MER33 DNA MER1_type -156 207 133 2379 110 0 0 chrX 40911599 40911908 -121688022 + AluSx SINE Alu 2 310 -2 469 159 232 1 chrX 40911924 40912020 -121687910 - MER33 DNA MER1_type -250 74 1 446 134 98 0 chrX 40912400 40912482 -121687448 - L1MB7 LINE L1 0 6184 6095 2017 124 35 0 chrX 40912491 40912774 -121687156 - AluSx SINE Alu -19 293 1 849 181 85 16 chrX 40912785 40912973 -121686957 - L1MB4 LINE L1 0 6180 5980 1791 164 13 20 chrX 40913466 40913770 -121686160 - AluJo SINE Alu -10 302 1 1592 138 12 12 chrX 40914432 40914685 -121685245 + AluJb SINE Alu 1 253 -59 2105 131 3 3 chrX 40915025 40915337 -121684593 - AluJb SINE Alu 0 312 1 248 123 55 0 chrX 40915832 40915905 -121684025 + (TAA)n Simple_repeat Simple_repeat 3 79 0 239 276 0 0 chrX 40916383 40916441 -121683489 + A-rich Low_complexity Low_complexity 1 58 0 338 21 0 42 chrX 40917764 40917812 -121682118 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 353 229 67 29 chrX 40918565 40918670 -121681260 + MIR3 SINE MIR 88 196 -12 315 345 84 51 chrX 40919163 40919459 -121680471 - L2 LINE L2 -5 3267 2962 264 30 0 0 chrX 40920775 40920808 -121679122 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 557 258 157 0 chrX 40921315 40921474 -121678456 - MER5A DNA MER1_type -3 186 3 2147 130 0 3 chrX 40922230 40922529 -121677401 - AluSx SINE Alu -14 298 1 1656 164 66 11 chrX 40922652 40923018 -121676912 + MER58D DNA MER1_type 1 386 0 23 33 0 0 chrX 40923179 40923209 -121676721 + AT_rich Low_complexity Low_complexity 1 30 0 227 256 47 12 chrX 40924344 40924430 -121675500 + MIR3 SINE MIR 95 183 -25 924 229 57 0 chrX 40924931 40925158 -121674772 - MIR SINE MIR -21 241 2 7295 203 81 29 chrX 40925563 40927304 -121672626 - L1MD2 LINE L1 -470 5889 3961 2372 99 0 0 chrX 40927304 40927607 -121672323 + AluY SINE Alu 3 305 -6 7295 203 81 29 chrX 40927607 40928500 -121671430 - L1MD2 LINE L1 -2398 3961 3115 567 236 113 57 chrX 40929576 40929805 -121670125 + MIR SINE MIR 20 261 -1 969 219 21 39 chrX 40930065 40930298 -121669632 - MER106A DNA MER1_type -1 235 7 899 171 0 151 chrX 40930312 40930570 -121669360 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chrX 40932417 40932446 -121667484 + AT_rich Low_complexity Low_complexity 1 29 0 2430 86 0 19 chrX 40932911 40933225 -121666705 + AluSx SINE Alu 1 308 -4 405 0 0 0 chrX 40933501 40933546 -121666384 + (T)n Simple_repeat Simple_repeat 1 45 0 1317 130 128 185 chrX 40934110 40934624 -121665306 - MER31A LTR ERV1 0 485 1 229 233 63 107 chrX 40934624 40934830 -121665100 + L1MC4 LINE L1 7829 8025 -17 380 275 192 6 chrX 40935334 40935501 -121664429 - MIR SINE MIR -18 244 47 1486 268 70 78 chrX 40935738 40936189 -121663741 - MLT1G LTR MaLR -88 507 20 329 259 12 0 chrX 40936362 40936447 -121663483 + L2 LINE L2 3185 3270 -2 202 73 49 0 chrX 40938458 40938499 -121661431 + A-rich Low_complexity Low_complexity 4 46 0 203 256 0 0 chrX 40938836 40938879 -121661051 + (TG)n Simple_repeat Simple_repeat 2 44 0 305 315 11 0 chrX 40939208 40939300 -121660630 - L2 LINE L2 0 3313 3221 1684 152 34 14 chrX 40939549 40939845 -121660085 - AluJo SINE Alu -10 302 1 1897 151 143 8 chrX 40939925 40940302 -121659628 - MSTA LTR MaLR 0 428 1 2326 98 0 0 chrX 40940308 40940605 -121659325 + AluSx SINE Alu 1 297 -15 417 159 0 0 chrX 40940655 40940724 -121659206 - MLT1E2 LTR MaLR -2 624 556 819 154 23 0 chrX 40940728 40940858 -121659072 - AluJb SINE Alu -179 133 1 1012 197 325 38 chrX 40940858 40941148 -121658782 - MLT1E2 LTR MaLR -52 574 368 2294 111 0 13 chrX 40941148 40941455 -121658475 - AluSx SINE Alu -9 303 1 1012 197 325 38 chrX 40941455 40941610 -121658320 - MLT1E2 LTR MaLR -258 368 1 316 208 0 0 chrX 40941939 40941992 -121657938 + L2 LINE L2 3242 3294 -19 2504 210 157 39 chrX 40942402 40943140 -121656790 - MER21B LTR ERV1 -27 836 12 620 227 20 7 chrX 40943162 40943312 -121656618 - MIR SINE MIR -80 182 31 1787 160 11 3 chrX 40946423 40946744 -121653186 - AluJb SINE Alu 0 323 1 408 211 55 0 chrX 40946831 40946940 -121652990 - L1ME3A LINE L1 -10 6094 5980 1263 141 6 0 chrX 40946946 40947123 -121652807 + AluJb SINE Alu 1 178 -134 2144 208 51 12 chrX 40947164 40947924 -121652006 - L1ME3A LINE L1 -143 5961 5106 2260 118 0 0 chrX 40947924 40948221 -121651709 - AluSx SINE Alu -15 297 1 2144 208 51 12 chrX 40948221 40948376 -121651554 - L1ME3A LINE L1 -998 5106 4959 304 230 86 58 chrX 40948797 40948936 -121650994 - L1ME3A LINE L1 -5887 183 41 946 238 102 85 chrX 40949542 40950245 -121649685 + HAL1 LINE L1 968 1682 -825 1557 146 51 67 chrX 40950529 40950844 -121649086 - AluJb SINE Alu -2 310 1 267 103 0 0 chrX 40951204 40951243 -121648687 + (TA)n Simple_repeat Simple_repeat 2 40 0 2493 77 0 0 chrX 40951542 40951840 -121648090 + AluSc SINE Alu 1 298 -11 1239 151 0 47 chrX 40952274 40952371 -121647559 + MER20 DNA MER1_type 18 118 -101 2512 120 6 6 chrX 40952371 40952737 -121647193 + MER47A DNA MER2_type 1 366 0 1239 151 0 47 chrX 40952737 40952851 -121647079 + MER20 DNA MER1_type 118 219 0 2612 65 3 0 chrX 40953928 40954237 -121645693 - AluSg SINE Alu 0 310 1 232 221 156 0 chrX 40954237 40954314 -121645616 + MIR SINE MIR 114 202 -60 228 300 70 0 chrX 40954733 40954833 -121645097 - MIR SINE MIR -69 139 33 2112 121 7 0 chrX 40956847 40957137 -121642793 - AluSx SINE Alu -20 292 1 2191 102 0 3 chrX 40957146 40957464 -121642466 - AluSg SINE Alu 0 317 1 2280 127 0 0 chrX 40957937 40958245 -121641685 + AluSq SINE Alu 1 308 -5 2199 108 0 3 chrX 40960714 40961009 -121638921 - AluSg SINE Alu -16 294 1 1777 67 0 9 chrX 40961662 40961887 -121638043 - AluSg/x SINE Alu 0 312 90 430 160 0 0 chrX 40962062 40962137 -121637793 + MER116 DNA Mariner 1 75 -5 2052 152 3 0 chrX 40962151 40962448 -121637482 + AluJb SINE Alu 1 298 -14 201 74 0 0 chrX 40962827 40962854 -121637076 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2177 92 0 7 chrX 40962993 40963326 -121636604 - AluSg SINE Alu 0 331 1 402 287 35 46 chrX 40964263 40964437 -121635493 - MER5B DNA MER1_type 0 178 7 1132 188 9 39 chrX 40967552 40967781 -121632149 + MER58A DNA MER1_type 3 224 0 2218 94 0 30 chrX 40967816 40968113 -121631817 + AluSx SINE Alu 1 288 -24 28 29 0 0 chrX 40968691 40968726 -121631204 + AT_rich Low_complexity Low_complexity 1 35 0 2242 120 0 3 chrX 40969919 40970219 -121629711 - AluSx SINE Alu -13 299 1 2359 124 122 20 chrX 40970255 40970657 -121629273 - LTR47B LTR ERVL 0 443 1 2363 84 7 0 chrX 40970731 40971027 -121628903 - AluSx SINE Alu -14 298 1 6523 204 93 26 chrX 40971036 40972338 -121627592 + L1MD2 LINE L1 18 1232 -5308 2033 117 13 0 chrX 40972338 40972637 -121627293 - AluSx SINE Alu -9 303 1 6523 204 93 26 chrX 40972637 40974220 -121625710 + L1MD2 LINE L1 1232 3624 -2916 1982 138 26 0 chrX 40974220 40974525 -121625405 + AluSq SINE Alu 1 313 0 6523 204 93 26 chrX 40974525 40974819 -121625111 + L1MD2 LINE L1 3624 3897 -2643 2717 72 3 8 chrX 40974821 40975183 -121624747 + L1PA8 LINE L1 5813 6172 0 2260 95 0 0 chrX 40975208 40975513 -121624417 + AluSx SINE Alu 1 305 -7 4167 172 40 25 chrX 40975513 40976350 -121623580 + L1MD2 LINE L1 5868 6720 -33 1479 139 46 4 chrX 40976350 40976588 -121623342 - AluJo SINE Alu -64 248 1 4167 172 40 25 chrX 40976588 40976623 -121623307 + L1MD2 LINE L1 6720 6753 0 2097 95 0 3 chrX 40977319 40977602 -121622328 - AluSx SINE Alu -16 296 15 2360 82 3 0 chrX 40979848 40980151 -121619779 + AluSp SINE Alu 1 304 -9 1892 115 11 7 chrX 40980838 40981124 -121618806 + AluSx SINE Alu 1 287 -25 2131 119 7 0 chrX 40981293 40981603 -121618327 + AluSx SINE Alu 1 312 0 2289 80 10 0 chrX 40982328 40982627 -121617303 - AluSp SINE Alu -11 302 1 2678 112 40 5 chrX 40982854 40983284 -121616646 + L1MA4A LINE L1 5854 6298 -5 437 264 146 47 chrX 40984415 40984859 -121615071 + L1MC4a LINE L1 5444 5931 -1877 2292 76 3 0 chrX 40984988 40985279 -121614651 + AluSp SINE Alu 1 292 -21 2302 79 0 0 chrX 40985316 40985607 -121614323 - AluSg SINE Alu -19 291 1 23 0 0 0 chrX 40985608 40985631 -121614299 + AT_rich Low_complexity Low_complexity 1 23 0 2173 114 0 0 chrX 40985631 40985930 -121614000 - AluSx SINE Alu -13 299 1 256 328 12 9 chrX 40985931 40986038 -121613892 - MIR3 SINE MIR -41 167 60 2363 70 0 7 chrX 40986525 40986824 -121613106 + AluSc SINE Alu 1 297 -12 1679 172 0 23 chrX 40986877 40987180 -121612750 - AluJo SINE Alu -16 296 1 649 207 108 64 chrX 40987745 40987817 -121612113 + MLT1L LTR MaLR 62 129 -486 792 192 0 101 chrX 40987817 40988015 -121611915 + MER5B DNA MER1_type 1 178 0 649 207 108 64 chrX 40988015 40988145 -121611785 + MLT1L LTR MaLR 129 273 -342 1174 157 35 101 chrX 40988157 40988443 -121611487 + AluJb SINE Alu 1 267 -45 865 195 6 12 chrX 40988445 40988609 -121611321 + AluJo/FRAM SINE Alu 140 302 0 448 250 125 0 chrX 40988692 40988820 -121611110 + MLT1L LTR MaLR 335 478 -137 369 252 118 31 chrX 40989169 40989296 -121610634 + MIR SINE MIR 20 157 -105 197 250 62 0 chrX 40989294 40989342 -121610588 + L2 LINE L2 3201 3251 -21 * 189 74 0 0 chrX 40989732 40989759 -121610171 + (A)n Simple_repeat Simple_repeat 1 27 0 330 176 10 39 chrX 40990657 40990759 -121609171 + GA-rich Low_complexity Low_complexity 6 104 0 262 293 109 7 chrX 40991035 40991182 -121608748 + L2 LINE L2 1204 1365 -1949 21 36 0 0 chrX 40991939 40991967 -121607963 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 40992404 40992439 -121607491 + GC_rich Low_complexity Low_complexity 1 35 0 258 175 0 70 chrX 40993663 40993745 -121606185 + MIR SINE MIR 102 174 -88 305 111 89 0 chrX 40993746 40993791 -121606139 + MLT1I LTR MaLR 354 402 -7 188 272 228 20 chrX 40994190 40994444 -121605486 + L2 LINE L2 852 1158 -2156 353 106 0 0 chrX 40994478 40994525 -121605405 + Alu SINE Alu 2 48 -254 341 256 142 61 chrX 40994547 40994793 -121605137 + L2 LINE L2 1217 1482 -1832 1591 136 28 35 chrX 40994887 40995174 -121604756 - AluJb SINE Alu -27 285 1 290 291 165 19 chrX 40995395 40995601 -121604329 + MLT1H LTR MaLR 119 354 -195 236 227 350 21 chrX 40995650 40995703 -121604227 - MER5A DNA MER1_type 0 189 155 1913 146 0 10 chrX 40995703 40996011 -121603919 + AluJb SINE Alu 1 305 -7 236 227 350 21 chrX 40996011 40996054 -121603876 - MER5A DNA MER1_type -34 155 61 1138 117 174 103 chrX 40996081 40996247 -121603683 - AluJo SINE Alu 0 302 106 2403 67 0 0 chrX 40996247 40996544 -121603386 + AluSg SINE Alu 1 297 -13 1138 117 174 103 chrX 40996544 40996659 -121603271 - AluJo SINE Alu -196 106 1 391 176 29 0 chrX 40996659 40996727 -121603203 - MER5A DNA MER1_type -111 78 9 211 189 0 0 chrX 40997486 40997523 -121602407 + CT-rich Low_complexity Low_complexity 2 38 0 267 261 92 0 chrX 40997553 40997618 -121602312 - MER91A DNA MER1_type 0 196 126 317 312 46 9 chrX 40997643 40997752 -121602178 - MER91A DNA MER1_type -42 154 42 299 325 19 34 chrX 40997753 40997875 -121602055 + L2 LINE L2 1709 1828 -1486 4766 76 40 9 chrX 40997875 40998109 -121601821 + PABL_B LTR ERV1 1 226 -441 2172 92 14 0 chrX 40998109 40998402 -121601528 + AluSx SINE Alu 3 299 -13 4766 76 40 9 chrX 40998402 40998814 -121601116 + PABL_B LTR ERV1 226 667 0 299 325 19 34 chrX 40998814 40998897 -121601033 + L2 LINE L2 1828 1911 -1403 810 210 0 34 chrX 40998919 40999095 -121600835 - AluJo SINE Alu -140 172 3 258 197 49 0 chrX 40999097 40999158 -121600772 + L2 LINE L2 1907 1970 -1344 251 330 64 0 chrX 40999187 40999296 -121600634 + L2 LINE L2 1957 2072 -1242 541 203 70 63 chrX 40999358 40999516 -121600414 + MIR SINE MIR 31 189 -73 405 0 0 0 chrX 40999516 40999561 -121600369 + (TA)n Simple_repeat Simple_repeat 2 46 0 1768 141 121 10 chrX 40999562 40999875 -121600055 + MER7A DNA MER2_type 1 346 0 347 0 23 0 chrX 40999876 40999919 -121600011 + (TG)n Simple_repeat Simple_repeat 2 45 0 714 291 221 22 chrX 41000039 41000413 -121599517 + L2 LINE L2 2227 2704 -610 1748 158 24 0 chrX 41000413 41000705 -121599225 - AluJb SINE Alu -13 299 1 714 291 221 22 chrX 41000705 41000774 -121599156 + L2 LINE L2 2704 2758 -556 282 270 0 0 chrX 41000838 41000901 -121599029 + L2 LINE L2 3249 3311 -2 336 48 0 0 chrX 41001221 41001263 -121598667 + (TC)n Simple_repeat Simple_repeat 2 43 0 1620 189 0 0 chrX 41001263 41001543 -121598387 - AluJb SINE Alu -32 280 1 360 259 67 37 chrX 41001711 41001846 -121598084 - L2 LINE L2 -4 3309 3171 2012 92 25 0 chrX 41001944 41002226 -121597704 + AluSx SINE Alu 1 289 -23 413 62 15 0 chrX 41002242 41002307 -121597623 + (TC)n Simple_repeat Simple_repeat 2 67 0 303 355 8 8 chrX 41002434 41002555 -121597375 - L1M4 LINE L1 -1465 4681 4561 377 200 55 27 chrX 41002564 41002674 -121597256 - MLT1D LTR MaLR -381 124 12 1400 195 20 37 chrX 41002682 41002712 -121597218 + L1M4 LINE L1 4375 4404 -1742 2054 131 0 0 chrX 41002712 41003018 -121596912 + AluSx SINE Alu 1 306 -6 1400 195 20 37 chrX 41003018 41003509 -121596421 + L1M4 LINE L1 4404 5011 -1135 1725 144 17 30 chrX 41003509 41003807 -121596123 + AluJb SINE Alu 1 294 -18 1400 195 20 37 chrX 41003807 41004121 -121595809 + L1M4 LINE L1 5011 5329 -817 2572 42 0 0 chrX 41005582 41005889 -121594041 + AluY SINE Alu 1 307 -4 3539 199 79 25 chrX 41005909 41006846 -121593084 + L1ME1 LINE L1 5186 6166 0 1689 218 34 53 chrX 41006980 41007039 -121592891 - LTR16A LTR ERVL -2 448 389 1635 118 0 0 chrX 41007039 41007268 -121592662 - AluSg/x SINE Alu -9 303 75 1689 218 34 53 chrX 41007268 41007644 -121592286 - LTR16A LTR ERVL -61 389 21 1804 118 3 20 chrX 41007937 41008234 -121591696 - AluJo SINE Alu -20 292 1 220 300 58 96 chrX 41008505 41008680 -121591250 + L2 LINE L2 2064 2244 -1070 2108 103 0 0 chrX 41008680 41008961 -121590969 + AluSq SINE Alu 1 281 -32 220 300 58 96 chrX 41008961 41009411 -121590519 + L2 LINE L2 2244 2665 -649 186 387 0 0 chrX 41009658 41009733 -121590197 + L2 LINE L2 2896 2970 -302 2076 117 0 7 chrX 41009860 41010158 -121589772 + AluSx SINE Alu 1 296 -16 849 145 0 0 chrX 41010497 41010621 -121589309 - FLAM_C SINE Alu -9 124 1 2133 84 3 7 chrX 41010770 41011054 -121588876 - AluSx SINE Alu -11 301 19 348 133 0 33 chrX 41011158 41011213 -121588717 - U3 snRNA snRNA -149 68 15 1734 169 16 3 chrX 41011213 41011520 -121588410 + AluJb SINE Alu 2 312 0 1807 86 124 0 chrX 41011944 41012211 -121587719 - AluSx SINE Alu -10 302 3 4401 147 32 4 chrX 41012350 41013042 -121586888 + MER50 LTR ERV1 1 711 -23 3918 109 79 60 chrX 41013043 41013106 -121586824 - LTR8A LTR ERV1 -19 708 648 2038 127 0 17 chrX 41013106 41013244 -121586686 + AluSx SINE Alu 1 140 -172 2022 128 3 0 chrX 41013244 41013533 -121586397 + AluSx SINE Alu 1 290 -22 2038 127 0 17 chrX 41013533 41013694 -121586236 + AluSx SINE Alu 140 295 -17 3918 109 79 60 chrX 41013694 41014117 -121585813 - LTR8A LTR ERV1 -79 648 203 2250 90 0 0 chrX 41014117 41014417 -121585513 - AluSx SINE Alu -12 300 1 3918 109 79 60 chrX 41014417 41014624 -121585306 - LTR8A LTR ERV1 -524 203 1 237 136 23 0 chrX 41014646 41014690 -121585240 - L1M4 LINE L1 -913 5233 5189 2139 169 43 102 chrX 41014696 41015252 -121584678 + MER4E LTR ERV1 1 523 -256 1951 110 11 0 chrX 41015262 41015544 -121584386 + AluSx SINE Alu 1 285 -27 30 32 0 48 chrX 41015625 41015650 -121584280 + AT_rich Low_complexity Low_complexity 1 26 -34 2220 92 0 0 chrX 41015650 41015942 -121583988 - AluSc SINE Alu -17 292 1 30 32 0 48 chrX 41015942 41015979 -121583951 + AT_rich Low_complexity Low_complexity 26 60 0 1677 174 0 7 chrX 41016181 41016474 -121583456 - AluJo SINE Alu -21 291 1 1958 122 125 12 chrX 41016531 41016866 -121583064 - MER83C LTR ERV1 0 373 1 390 291 139 40 chrX 41016868 41017132 -121582798 - L1M4 LINE L1 -1299 4847 4544 2275 55 17 3 chrX 41017132 41017422 -121582508 - AluY SINE Alu -17 294 1 390 291 139 40 chrX 41017422 41017480 -121582450 - L1M4 LINE L1 -1602 4544 4493 1125 150 0 95 chrX 41017710 41017905 -121582025 + L1MA9 LINE L1 5853 6020 -292 1913 142 0 3 chrX 41017905 41018201 -121581729 - AluSx SINE Alu -17 295 1 1125 150 0 95 chrX 41018201 41018258 -121581672 + L1MA9 LINE L1 6020 6081 -231 296 143 89 0 chrX 41018260 41018316 -121581614 + L1MA9 LINE L1 6180 6240 -72 1254 186 16 65 chrX 41018775 41019098 -121580832 + AluJo SINE Alu 1 307 -5 2120 92 0 20 chrX 41019103 41019406 -121580524 + AluSq SINE Alu 1 297 -16 197 373 65 0 chrX 41019689 41019842 -121580088 - MIR SINE MIR 0 262 100 358 271 243 0 chrX 41021735 41021879 -121578051 - MIR SINE MIR -34 228 50 242 257 136 36 chrX 41021906 41022046 -121577884 + L2 LINE L2 3159 3312 -1 24 0 0 0 chrX 41023500 41023524 -121576406 + AT_rich Low_complexity Low_complexity 1 24 0 2375 100 0 10 chrX 41023629 41023940 -121575990 + AluSq SINE Alu 1 308 -5 1444 170 21 24 chrX 41024146 41024434 -121575496 - AluJo SINE Alu -5 307 21 283 277 183 34 chrX 41025306 41025495 -121574435 - L1MC4a LINE L1 -1850 5958 5799 2374 97 3 0 chrX 41025495 41025803 -121574127 - AluSp SINE Alu -4 309 1 2298 104 0 0 chrX 41025803 41026101 -121573829 - AluSq SINE Alu -15 298 1 283 277 183 34 chrX 41026101 41026145 -121573785 - L1MC4a LINE L1 -2008 5800 5689 323 241 224 23 chrX 41026301 41026475 -121573455 + L1M4 LINE L1 3580 3788 -2358 2495 54 0 0 chrX 41026622 41026920 -121573010 - AluY SINE Alu -13 298 1 946 208 38 9 chrX 41027067 41027279 -121572651 - MER20 DNA MER1_type -1 218 1 501 271 107 43 chrX 41027302 41027676 -121572254 - L1ME LINE L1 -312 5809 5460 2064 151 0 0 chrX 41027676 41027980 -121571950 - AluJb SINE Alu -8 304 1 1656 212 0 0 chrX 41027981 41028273 -121571657 - AluJb SINE Alu -20 292 1 501 271 107 43 chrX 41028273 41028356 -121571574 - L1ME LINE L1 -660 5461 5308 342 302 77 48 chrX 41028623 41028780 -121571150 + L1M4 LINE L1 4910 5078 -1068 2154 125 0 0 chrX 41028780 41029076 -121570854 - AluSx SINE Alu -16 296 1 342 302 77 48 chrX 41029076 41029166 -121570764 + L1M4 LINE L1 5078 5164 -982 183 277 62 31 chrX 41029350 41029415 -121570515 + L2 LINE L2 2425 2491 -823 2187 101 17 0 chrX 41029607 41029894 -121570036 - AluSx SINE Alu -20 292 1 1963 164 3 6 chrX 41030098 41030276 -121569654 - AluJb SINE Alu -2 310 132 2443 77 7 0 chrX 41030276 41030573 -121569357 - AluSc SINE Alu -10 299 1 1963 164 3 6 chrX 41030573 41030705 -121569225 - AluJb SINE Alu -180 132 1 319 260 160 13 chrX 41030706 41030856 -121569074 - L1ME LINE L1 -376 5745 5574 247 275 28 28 chrX 41031079 41031188 -121568742 - L1ME LINE L1 -468 5653 5545 2009 153 3 3 chrX 41031437 41031738 -121568192 + AluJb SINE Alu 1 301 -11 2228 128 0 0 chrX 41031842 41032148 -121567782 + AluSx SINE Alu 1 306 -6 1771 120 7 66 chrX 41032222 41032523 -121567407 + AluJb SINE Alu 1 283 -29 2379 85 58 33 chrX 41032610 41032975 -121566955 + THE1C LTR MaLR 2 375 0 225 0 0 0 chrX 41033028 41033053 -121566877 + (TA)n Simple_repeat Simple_repeat 2 26 0 1110 73 0 53 chrX 41033053 41033204 -121566726 - AluSg/x SINE Alu -12 298 156 1618 85 0 0 chrX 41033204 41033403 -121566527 - AluSx SINE Alu -113 199 1 2856 112 18 59 chrX 41033416 41033905 -121566025 - LTR8A LTR ERV1 0 727 183 1642 75 44 49 chrX 41033905 41034131 -121565799 - MER30 DNA MER1_type -1 229 5 2856 112 18 59 chrX 41034131 41034307 -121565623 - LTR8A LTR ERV1 -544 183 1 2431 70 6 10 chrX 41034686 41034998 -121564932 - AluSq SINE Alu -2 311 1 293 93 19 0 chrX 41035009 41035063 -121564867 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 2280 197 51 30 chrX 41035250 41035782 -121564148 - MER21B LTR ERV1 -20 843 301 805 191 6 19 chrX 41035784 41035946 -121563984 - AluJb SINE Alu -16 296 137 1812 149 33 13 chrX 41035953 41036255 -121563675 - MER21B LTR ERV1 -553 310 3 537 231 43 0 chrX 41036843 41036960 -121562970 + MER92C LTR ERV1 188 309 -245 255 277 124 62 chrX 41037105 41037197 -121562733 + L2 LINE L2 3085 3170 -102 2358 88 0 0 chrX 41037197 41037494 -121562436 - AluSg SINE Alu -13 297 1 255 277 124 62 chrX 41037494 41037578 -121562352 + L2 LINE L2 3170 3272 0 525 227 189 0 chrX 41037715 41037900 -121562030 + MIR SINE MIR 23 242 -20 238 291 108 58 chrX 41038782 41039023 -121560907 - HAL1 LINE L1 -974 1533 1281 5834 226 82 32 chrX 41039308 41039606 -121560324 - L1ME LINE L1 -570 5530 5248 2232 96 14 0 chrX 41039606 41039897 -121560033 - AluSx SINE Alu -16 296 2 5834 226 82 32 chrX 41039897 41040305 -121559625 - L1ME LINE L1 -852 5248 4862 1668 163 21 14 chrX 41040305 41040593 -121559337 + AluJb SINE Alu 1 290 -22 5834 226 82 32 chrX 41040593 41041239 -121558691 - L1ME LINE L1 -1238 4862 4249 2308 102 0 37 chrX 41041239 41041562 -121558368 - AluSp SINE Alu -2 311 1 5834 226 82 32 chrX 41041562 41041869 -121558061 - L1ME LINE L1 -1851 4249 3959 1832 172 3 0 chrX 41041869 41042154 -121557776 - AluJo SINE Alu -26 286 1 5834 226 82 32 chrX 41042154 41042170 -121557760 - L1ME LINE L1 -2141 3959 3945 1954 111 42 29 chrX 41042170 41042477 -121557453 - AluSq SINE Alu -2 311 1 5834 226 82 32 chrX 41042477 41042822 -121557108 - L1ME LINE L1 -2155 3945 3619 2112 137 3 0 chrX 41042822 41043122 -121556808 - AluSq SINE Alu -12 301 1 5834 226 82 32 chrX 41043122 41043254 -121556676 - L1ME LINE L1 -2481 3619 3495 2372 100 0 0 chrX 41043254 41043563 -121556367 + AluSg SINE Alu 1 309 -1 5834 226 82 32 chrX 41043563 41043752 -121556178 - L1ME LINE L1 -2605 3495 3083 627 240 150 65 chrX 41044031 41044204 -121555726 - L1ME3A LINE L1 -232 5938 5781 1744 190 7 0 chrX 41044204 41044499 -121555431 - AluJo SINE Alu -15 297 1 627 240 150 65 chrX 41044499 41044845 -121555085 - L1ME3A LINE L1 -389 5781 5375 2136 109 0 45 chrX 41044948 41045290 -121554640 - AluSx SINE Alu 0 328 1 1640 156 57 18 chrX 41045300 41045583 -121554347 - AluJb SINE Alu -13 299 6 2044 113 3 60 chrX 41045659 41045978 -121553952 - AluSx SINE Alu -11 301 1 1683 221 59 137 chrX 41046030 41046250 -121553680 - L1ME LINE L1 -3890 2190 1954 3376 150 35 25 chrX 41046250 41046458 -121553472 - L1MD1 LINE L1 -8 6234 6030 2245 102 10 0 chrX 41046458 41046763 -121553167 - AluSx SINE Alu -4 308 1 3376 150 35 25 chrX 41046763 41047155 -121552775 - L1MD1 LINE L1 -212 6030 5628 1683 221 59 137 chrX 41047155 41047247 -121552683 - L1ME LINE L1 -4126 1954 1856 2318 110 0 0 chrX 41047247 41047556 -121552374 - AluSx SINE Alu -2 310 2 954 0 8 24 chrX 41047556 41047680 -121552250 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 2067 121 4 0 chrX 41047680 41047961 -121551969 - AluSx SINE Alu -30 282 1 270 0 0 0 chrX 41047962 41047992 -121551938 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2187 67 0 54 chrX 41047992 41048289 -121551641 - AluY SINE Alu -30 281 1 762 203 8 0 chrX 41048291 41048419 -121551511 - FLAM_A SINE Alu -3 130 2 1683 221 59 137 chrX 41048419 41048874 -121551056 - L1ME LINE L1 -4222 1858 1369 1026 127 19 0 chrX 41048874 41049031 -121550899 - L1MA2 LINE L1 0 6304 6145 564 97 0 0 chrX 41049032 41049104 -121550826 - U6 snRNA snRNA -18 89 18 1683 221 59 137 chrX 41049104 41049825 -121550105 - L1ME LINE L1 -4710 1370 613 2322 91 6 25 chrX 41049849 41050168 -121549762 - AluSq SINE Alu 0 313 1 369 305 37 32 chrX 41050548 41050738 -121549192 - L1ME LINE L1 -5878 192 2 * 644 189 57 11 chrX 41050737 41050912 -121549018 - L1M4 LINE L1 -2985 3161 2979 394 209 23 70 chrX 41050913 41050976 -121548954 - L1MA10 LINE L1 -3 6331 6275 1817 164 17 7 chrX 41050976 41051269 -121548661 + AluJo SINE Alu 5 300 -12 394 209 23 70 chrX 41051269 41051334 -121548596 - L1MA10 LINE L1 -59 6275 6209 453 220 37 59 chrX 41051337 41051488 -121548442 - L1M4 LINE L1 -2505 3641 3488 2090 146 7 0 chrX 41051488 41051796 -121548134 - AluSx SINE Alu -2 310 1 453 220 37 59 chrX 41051796 41051903 -121548027 - L1M4 LINE L1 -2658 3488 3310 1829 165 3 13 chrX 41052790 41053099 -121546831 - AluJb SINE Alu -6 306 1 333 231 110 67 chrX 41053450 41053592 -121546338 - L1ME LINE L1 -682 5978 5844 2431 88 3 0 chrX 41053592 41053900 -121546030 - AluSc SINE Alu 0 309 1 333 231 110 67 chrX 41053900 41054103 -121545827 - L1ME LINE L1 -816 5844 5606 2282 100 0 10 chrX 41054103 41054404 -121545526 - AluSx SINE Alu -14 298 1 333 231 110 67 chrX 41054404 41054423 -121545507 - L1ME LINE L1 -1054 5606 5589 42 0 0 0 chrX 41054447 41054489 -121545441 + AT_rich Low_complexity Low_complexity 1 42 0 1963 87 0 15 chrX 41054543 41054807 -121545123 - AluSx SINE Alu -52 260 1 2163 125 3 0 chrX 41054844 41055141 -121544789 - AluSq SINE Alu -15 298 1 759 289 108 25 chrX 41055207 41055771 -121544159 - L1ME LINE L1 -1476 5168 4558 627 218 42 36 chrX 41055798 41055963 -121543967 - MIR SINE MIR 0 262 97 536 236 64 81 chrX 41055970 41056062 -121543868 - L1ME LINE L1 -2098 4546 4454 2320 105 0 6 chrX 41056062 41056376 -121543554 - AluSx SINE Alu 0 312 1 536 236 64 81 chrX 41056376 41056580 -121543350 - L1ME LINE L1 -2190 4454 4255 8320 17 0 0 chrX 41056583 41057956 -121541974 - L1PA3 LINE L1 -1 6154 4780 4034 13 0 2 chrX 41057956 41058413 -121541517 + L1P LINE L1 4191 4646 -1500 399 281 78 22 chrX 41058424 41058655 -121541275 - L1ME LINE L1 -2383 4261 4018 546 243 32 0 chrX 41059243 41059373 -121540557 + MER2 DNA MER2_type 1 143 -96 402 197 0 0 chrX 41059364 41059425 -121540505 + MER2 DNA MER2_type 285 345 0 * 1605 262 134 24 chrX 41059427 41059516 -121540414 - HAL1 LINE L1 -375 2132 2054 1691 162 3 43 chrX 41059516 41059818 -121540112 - AluJo SINE Alu -22 290 1 1605 262 134 24 chrX 41059818 41060384 -121539546 - HAL1 LINE L1 -453 2054 1405 558 270 34 27 chrX 41060410 41060638 -121539292 - HERVL68 LTR ERVL -1798 1239 1075 528 198 269 18 chrX 41060638 41060805 -121539125 - MER68 LTR ERV1 -351 211 3 251 235 0 0 chrX 41060807 41060875 -121539055 - L1ME LINE L1 -4598 2227 2160 787 223 75 81 chrX 41060894 41061076 -121538854 - L1ME LINE L1 -6185 357 176 2007 148 0 0 chrX 41061076 41061087 -121538843 - AluSq SINE Alu -21 292 282 243 0 0 0 chrX 41061087 41061114 -121538816 + (TG)n Simple_repeat Simple_repeat 1 27 0 2007 148 0 0 chrX 41061114 41061393 -121538537 - AluSq SINE Alu -30 283 2 787 223 75 81 chrX 41061393 41061555 -121538375 - L1ME LINE L1 -6366 176 15 2355 90 0 13 chrX 41061695 41062029 -121537901 + AluSg SINE Alu 1 310 0 2339 98 0 0 chrX 41062240 41062537 -121537393 + AluSq SINE Alu 1 297 -16 216 200 0 0 chrX 41062788 41062833 -121537097 + (TG)n Simple_repeat Simple_repeat 2 46 0 1379 135 5 10 chrX 41062834 41063042 -121536888 - AluJb SINE Alu -20 292 86 275 305 112 22 chrX 41063547 41063770 -121536160 - HAL1 LINE L1 -838 1669 1427 662 260 23 34 chrX 41063923 41064100 -121535830 - MER68 LTR ERV1 -4 558 384 256 230 50 60 chrX 41064167 41064267 -121535663 - MER68 LTR ERV1 -202 360 262 2477 79 0 0 chrX 41064554 41064857 -121535073 - AluSg SINE Alu -7 303 1 231 114 0 0 chrX 41065195 41065230 -121534700 + (CA)n Simple_repeat Simple_repeat 2 36 0 1733 178 7 16 chrX 41067415 41067719 -121532211 + AluJb SINE Alu 1 301 -11 701 202 0 16 chrX 41067753 41067877 -121532053 - FLAM_C SINE Alu -15 128 7 2126 102 0 36 chrX 41067974 41068278 -121531652 - AluSq SINE Alu -18 295 3 689 86 0 11 chrX 41069320 41069413 -121530517 + Tigger2a DNA MER2_type 2 93 -341 * 1054 131 13 0 chrX 41069411 41069564 -121530366 + THE1B LTR MaLR 210 364 0 1911 166 7 0 chrX 41069884 41070186 -121529744 + AluJo SINE Alu 1 304 -8 892 299 53 19 chrX 41070561 41070628 -121529302 - HERVL LTR ERVL -2332 3322 3259 2623 111 8 24 chrX 41070628 41070998 -121528932 + THE1B LTR MaLR 1 364 0 892 299 53 19 chrX 41070998 41071251 -121528679 - HERVL LTR ERVL -2395 3259 2991 671 296 36 8 chrX 41071250 41071575 -121528355 - HERVL LTR ERVL -2338 3316 2948 * 597 254 113 17 chrX 41071594 41071771 -121528159 - HERVL LTR ERVL -2559 2437 2244 * 1223 293 20 6 chrX 41071765 41072123 -121527807 - HERVL LTR ERVL -2946 2050 1688 273 214 86 0 chrX 41072195 41072257 -121527673 + L1M1 LINE L1 2337 2404 -5161 1315 177 48 61 chrX 41072257 41072375 -121527555 + AluJo SINE Alu 1 119 -183 453 62 0 0 chrX 41072375 41072440 -121527490 + (CA)n Simple_repeat Simple_repeat 2 66 0 1315 177 48 61 chrX 41072440 41072481 -121527449 + AluJo SINE Alu 119 159 -143 360 0 0 0 chrX 41072481 41072521 -121527409 + (CA)n Simple_repeat Simple_repeat 2 41 0 1315 177 48 61 chrX 41072521 41072654 -121527276 + AluJo SINE Alu 159 290 -12 709 199 21 43 chrX 41072678 41072864 -121527066 - L1M4 LINE L1 -2073 4073 3892 1808 176 7 0 chrX 41072866 41073162 -121526768 - AluJo SINE Alu -14 298 1 773 183 23 15 chrX 41073164 41073295 -121526635 - AluJo/FLAM SINE Alu -179 133 2 286 289 22 30 chrX 41073296 41073431 -121526499 - L1MEc LINE L1 -4757 1639 1506 1225 305 61 65 chrX 41073487 41073780 -121526150 - L1MEc LINE L1 -5485 911 618 6675 64 32 0 chrX 41073780 41074665 -121525265 - L1PA8A LINE L1 -1 6130 5213 1225 305 61 65 chrX 41074665 41075260 -121524670 - L1MEc LINE L1 -5778 618 27 374 271 112 34 chrX 41075265 41075604 -121524326 - L1MDb LINE L1 -4989 1420 1162 1788 225 81 45 chrX 41075722 41075787 -121524143 - MLT1E2 LTR MaLR 0 626 565 2117 126 10 7 chrX 41075787 41076080 -121523850 - AluSx SINE Alu -18 294 1 1788 225 81 45 chrX 41076080 41076583 -121523347 - MLT1E2 LTR MaLR -61 565 60 4041 105 8 12 chrX 41076595 41077183 -121522747 + MER11C LTR ERVK 472 1057 -14 2421 103 0 3 chrX 41077200 41077529 -121522401 + HERVK11 LTR ERVK 1 328 -7625 * 4358 113 32 5 chrX 41077517 41078146 -121521784 + HERVK11 LTR ERVK 206 851 -7102 3155 83 38 5 chrX 41078146 41078738 -121521192 + HERVK11 LTR ERVK 1165 2710 -5243 * 8451 34 2 0 chrX 41078720 41079691 -121520239 + HERVK11 LTR ERVK 2912 3884 -4069 1013 107 0 0 chrX 41079665 41079805 -121520125 + HERVK11 LTR ERVK 4462 4601 -3352 * 3317 37 92 2 chrX 41079803 41080372 -121519558 + HERVK11 LTR ERVK 5525 6230 -1723 37464 87 17 13 chrX 41080373 41082203 -121517727 + L1PA6 LINE L1 14 1836 -4318 2248 102 3 3 chrX 41082203 41082497 -121517433 - AluY SINE Alu -17 294 1 37464 87 17 13 chrX 41082497 41084853 -121515077 + L1PA6 LINE L1 1836 4231 -1923 3900 104 4 4 chrX 41084853 41085364 -121514566 + MER9 LTR ERVK 1 511 0 37464 87 17 13 chrX 41085364 41087282 -121512648 + L1PA6 LINE L1 4231 6141 -13 258 143 0 0 chrX 41087291 41087340 -121512590 + (A)n Simple_repeat Simple_repeat 1 49 0 2426 65 14 140 chrX 41087340 41087429 -121512501 - THE1C-int LTR MaLR -1205 375 276 2044 130 7 13 chrX 41087429 41087737 -121512193 - AluSx SINE Alu -6 306 1 2426 65 14 140 chrX 41087737 41088076 -121511854 - THE1C-int LTR MaLR -1304 276 1 2717 91 16 42 chrX 41088076 41088461 -121511469 - THE1C LTR MaLR 0 375 1 682 132 0 0 chrX 41088463 41088554 -121511376 - AluJ/FLAM SINE Alu -220 92 2 1778 159 17 0 chrX 41088650 41088939 -121510991 + AluJo SINE Alu 5 298 -14 2278 104 0 0 chrX 41090849 41091147 -121508783 - AluSx SINE Alu -14 298 1 1714 167 11 0 chrX 41091954 41092249 -121507681 + AluJb SINE Alu 13 310 0 3636 161 34 29 chrX 41092395 41092929 -121507001 - MER44D DNA MER2_type -1882 605 194 2249 112 10 0 chrX 41092929 41093225 -121506705 + AluSx SINE Alu 1 299 -13 3636 161 34 29 chrX 41093225 41093307 -121506623 - MER44D DNA MER2_type -2293 194 114 232 287 66 22 chrX 41094305 41094441 -121505489 + L1MEd LINE L1 153 294 -5911 431 329 93 29 chrX 41094509 41094919 -121505011 + L1MEd LINE L1 388 823 -5382 * 3716 111 55 10 chrX 41094913 41095510 -121504420 + L1MC2 LINE L1 5653 6276 -68 2911 179 96 8 chrX 41095519 41096227 -121503703 + L1MEd LINE L1 2344 3113 -3102 2723 163 42 6 chrX 41096265 41096763 -121503167 + L1MD1 LINE L1 5727 6242 0 295 222 12 0 chrX 41096836 41096917 -121503013 + L1ME2 LINE L1 2193 2274 -4122 * 2799 222 55 40 chrX 41096913 41097797 -121502133 + L1ME2 LINE L1 3944 4844 -1371 1437 173 4 8 chrX 41097797 41098034 -121501896 - MER46A DNA MER2_type 0 236 1 2799 222 55 40 chrX 41098034 41098058 -121501872 + L1ME2 LINE L1 4844 4866 -1349 29 84 0 0 chrX 41098223 41098294 -121501636 + AT_rich Low_complexity Low_complexity 1 71 0 1767 133 23 53 chrX 41098327 41098627 -121501303 - AluJo SINE Alu -20 292 2 1930 195 157 31 chrX 41098683 41099301 -121500629 + L1ME2 LINE L1 4958 5497 -756 180 0 0 0 chrX 41099301 41099321 -121500609 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2137 120 0 7 chrX 41099326 41099610 -121500320 - AluSx SINE Alu -30 282 1 1930 195 157 31 chrX 41099610 41100135 -121499795 + L1ME2 LINE L1 5500 6253 0 467 176 92 13 chrX 41100577 41100730 -121499200 + L1MEd LINE L1 3143 3307 -2908 310 359 35 0 chrX 41101086 41101256 -121498674 - MER5A DNA MER1_type -1 188 3 627 246 155 5 chrX 41101312 41101519 -121498411 - MIR SINE MIR -12 250 13 279 288 240 7 chrX 41102452 41102598 -121497332 - MER5A DNA MER1_type 0 189 10 287 25 25 0 chrX 41103069 41103109 -121496821 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 340 309 110 31 chrX 41103149 41103340 -121496590 + HAL1 LINE L1 1328 1533 -974 363 222 81 0 chrX 41104235 41104334 -121495596 - MIR SINE MIR -121 141 35 2451 76 0 0 chrX 41104350 41104651 -121495279 - AluSg SINE Alu -9 301 1 302 235 143 34 chrX 41104792 41104911 -121495019 - L2 LINE L2 0 3272 3141 548 216 43 0 chrX 41105083 41105199 -121494731 - MER92C LTR ERV1 -246 308 188 1873 145 30 13 chrX 41105785 41106088 -121493842 + MER21B LTR ERV1 3 310 -553 778 195 6 19 chrX 41106095 41106254 -121493676 + AluJb SINE Alu 137 293 -19 1972 184 63 83 chrX 41106259 41106449 -121493481 + MER21B LTR ERV1 301 493 -370 2208 100 28 0 chrX 41106449 41106738 -121493192 - AluSp SINE Alu -16 297 1 1972 184 63 83 chrX 41106738 41107101 -121492829 + MER21B LTR ERV1 493 843 -20 2395 90 6 3 chrX 41107539 41107850 -121492080 - AluSx SINE Alu 0 312 1 364 264 181 21 chrX 41108094 41108287 -121491643 - L1ME LINE L1 -368 5753 5530 270 263 20 30 chrX 41108455 41108554 -121491376 - L1ME LINE L1 -2156 5652 5555 2116 106 11 0 chrX 41108802 41109118 -121490812 + AluSx SINE Alu 1 319 0 198 0 0 0 chrX 41109198 41109220 -121490710 + (A)n Simple_repeat Simple_repeat 1 22 0 261 208 49 28 chrX 41110452 41110596 -121489334 + (TTAA)n Simple_repeat Simple_repeat 2 148 0 1614 73 20 93 chrX 41111869 41112013 -121487917 + MER30 DNA MER1_type 1 121 -109 2532 68 10 0 chrX 41112013 41112320 -121487610 - AluSg SINE Alu 0 310 1 1614 73 20 93 chrX 41112320 41112423 -121487507 + MER30 DNA MER1_type 121 230 0 870 277 105 11 chrX 41113824 41114272 -121485658 + L1MC/D LINE L1 5308 5797 -2011 981 239 28 0 chrX 41114299 41114512 -121485418 + MER20 DNA MER1_type 1 219 0 210 71 0 0 chrX 41114592 41114620 -121485310 + (GA)n Simple_repeat Simple_repeat 2 29 0 1444 164 4 0 chrX 41114668 41114900 -121485030 + AluJb SINE Alu 72 304 -8 333 273 82 60 chrX 41114957 41115140 -121484790 - L1M4 LINE L1 -2367 3779 3593 230 312 150 16 chrX 41115299 41115546 -121484384 + L1MC4a LINE L1 5689 5968 -1840 206 151 0 38 chrX 41115829 41115844 -121484086 + GA-rich Low_complexity Low_complexity 3 17 -36 2361 92 10 0 chrX 41115844 41116149 -121483781 + AluSx SINE Alu 5 312 0 206 151 0 38 chrX 41116149 41116186 -121483744 + GA-rich Low_complexity Low_complexity 17 53 0 1900 141 34 0 chrX 41116785 41117082 -121482848 + AluJb SINE Alu 1 307 -5 23 0 0 0 chrX 41117386 41117409 -121482521 + AT_rich Low_complexity Low_complexity 1 23 0 328 286 95 16 chrX 41118866 41118992 -121480938 - L2 LINE L2 -1 3271 3136 428 288 159 0 chrX 41119043 41119206 -121480724 + MIR SINE MIR 60 248 -14 184 276 17 35 chrX 41121453 41121511 -121478419 + L2 LINE L2 3204 3260 -12 543 290 26 56 chrX 41123276 41123326 -121476604 - MIR SINE MIR -34 228 178 2187 96 3 0 chrX 41123326 41123618 -121476312 - AluSx SINE Alu -19 293 1 543 290 26 56 chrX 41123618 41123798 -121476132 - MIR SINE MIR -84 178 5 339 298 107 0 chrX 41123810 41123931 -121475999 - MIR3 SINE MIR -62 146 13 580 241 152 6 chrX 41123964 41124122 -121475808 - MER5A DNA MER1_type 0 189 9 318 67 0 0 chrX 41124203 41124248 -121475682 + (CA)n Simple_repeat Simple_repeat 2 46 0 318 277 139 15 chrX 41124270 41124407 -121475523 - MIR3 SINE MIR -36 172 19 236 216 34 57 chrX 41124880 41124968 -121474962 - MLT1J1 LTR MaLR -135 311 226 1600 186 118 17 chrX 41125569 41125924 -121474006 + MSTD LTR MaLR 6 396 0 1226 175 0 5 chrX 41125926 41126149 -121473781 + MSTD-int LTR MaLR 2 223 -1512 233 158 0 0 chrX 41126155 41126193 -121473737 - MSTA LTR MaLR -2 426 389 2044 138 0 10 chrX 41176720 41177018 -121422912 - AluJb SINE Alu -17 295 1 272 290 40 30 chrX 41177022 41177122 -121422808 + MIR SINE MIR 162 262 0 424 129 24 59 chrX 41177190 41177275 -121422655 + L1MC/D LINE L1 5710 5791 -542 1463 246 104 0 chrX 41177344 41177739 -121422191 + MLT1J2 LTR MaLR 7 442 -8 2032 148 0 7 chrX 41177894 41178197 -121421733 + AluJo SINE Alu 1 301 -11 1293 265 50 83 chrX 41178387 41179315 -121420615 - L1MC4 LINE L1 -1 8041 7145 314 287 113 22 chrX 41179744 41180064 -121419866 - L1MC4a LINE L1 -158 5963 5612 2399 60 0 11 chrX 41180070 41180381 -121419549 + AluY SINE Alu 1 308 0 518 264 139 10 chrX 41180576 41180777 -121419153 - MIR SINE MIR -6 256 30 321 186 0 0 chrX 41181671 41181741 -121418189 + GA-rich Low_complexity Low_complexity 1 70 0 2242 99 20 0 chrX 41181917 41182210 -121417720 + AluSg1 SINE Alu 1 299 -10 32 0 0 0 chrX 41182360 41182392 -121417538 + AT_rich Low_complexity Low_complexity 1 32 0 387 143 78 0 chrX 41182747 41182824 -121417106 + L1MA9 LINE L1 6196 6278 -34 216 135 0 0 chrX 41185311 41185348 -121414582 + (CAG)n Simple_repeat Simple_repeat 1 37 0 36 40 0 0 chrX 41185518 41185568 -121414362 + GC_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chrX 41185616 41185652 -121414278 + GC_rich Low_complexity Low_complexity 1 36 0 1064 235 140 60 chrX 41187000 41187235 -121412695 + MLT1G1 LTR MaLR 1 216 -379 2221 106 0 0 chrX 41187235 41187517 -121412413 + AluSx SINE Alu 1 282 -30 192 97 0 0 chrX 41187520 41187551 -121412379 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1064 235 140 60 chrX 41187551 41187860 -121412070 + MLT1G1 LTR MaLR 217 593 -2 299 313 42 42 chrX 41187996 41188188 -121411742 + L1ME1 LINE L1 329 520 -5876 1756 176 0 17 chrX 41188612 41188907 -121411023 + AluJo SINE Alu 1 290 -22 2714 212 70 34 chrX 41189119 41189588 -121410342 + L1ME1 LINE L1 748 1198 -5208 2261 112 3 0 chrX 41189588 41189884 -121410046 + AluSg SINE Alu 1 297 -13 2714 212 70 34 chrX 41189884 41190447 -121409483 + L1ME1 LINE L1 1198 1770 -4636 5601 217 29 68 chrX 41190500 41191297 -121408633 + L1ME1 LINE L1 3935 4761 -1665 2087 120 17 0 chrX 41191297 41191589 -121408341 - AluSx SINE Alu -15 297 1 5601 217 29 68 chrX 41191589 41192928 -121407002 + L1ME1 LINE L1 4761 5939 -487 2299 117 0 0 chrX 41192928 41193228 -121406702 - AluSx SINE Alu -12 300 1 5601 217 29 68 chrX 41193228 41193692 -121406238 + L1ME1 LINE L1 5939 6420 -6 2225 116 3 0 chrX 41193908 41194211 -121405719 + AluSx SINE Alu 1 304 -8 700 227 92 26 chrX 41194280 41194552 -121405378 + LTR33A LTR ERVL 289 522 -1 585 283 57 28 chrX 41194699 41194911 -121405019 + MLT1I LTR MaLR 1 218 -191 242 327 77 18 chrX 41195058 41195226 -121404704 + L2 LINE L2 2871 3048 -224 1946 107 14 35 chrX 41195281 41195570 -121404360 - AluSx SINE Alu -21 291 9 291 182 18 0 chrX 41195760 41195815 -121404115 + L2 LINE L2 3217 3272 0 24 53 0 0 chrX 41195824 41195862 -121404068 + AT_rich Low_complexity Low_complexity 1 38 0 47 86 0 0 chrX 41196182 41196299 -121403631 + AT_rich Low_complexity Low_complexity 1 117 0 390 225 0 0 chrX 41197520 41197591 -121402339 - MLT1J LTR MaLR -331 180 110 1758 169 136 7 chrX 41197847 41198188 -121401742 + L1MB5 LINE L1 5803 6174 0 922 261 60 108 chrX 41198323 41198396 -121401534 + MLT1J LTR MaLR 1 76 -435 2487 87 3 0 chrX 41198396 41198707 -121401223 + AluSx SINE Alu 1 312 0 922 261 60 108 chrX 41198707 41199170 -121400760 + MLT1J LTR MaLR 76 511 0 5834 134 6 7 chrX 41199326 41200427 -121399503 + L1MB1 LINE L1 5067 6168 0 1644 190 74 36 chrX 41200633 41200781 -121399149 - MLT1B LTR MaLR -11 379 238 2388 99 0 0 chrX 41200781 41201075 -121398855 - AluSx SINE Alu -18 294 1 1644 190 74 36 chrX 41201075 41201290 -121398640 - MLT1B LTR MaLR -152 238 2 1467 207 81 83 chrX 41201537 41201995 -121397935 - MLT1H LTR MaLR -2 547 91 291 122 0 0 chrX 41202000 41202049 -121397881 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1105 83 0 18 chrX 41202050 41202219 -121397711 + (TTTC)n Simple_repeat Simple_repeat 4 169 0 1783 101 10 95 chrX 41202219 41202525 -121397405 - AluSx SINE Alu -32 280 1 228 133 0 0 chrX 41202525 41202555 -121397375 - MLT1H LTR MaLR -446 103 74 3422 129 36 91 chrX 41202756 41202868 -121397062 + MER41B LTR ERV1 1 118 -517 2310 95 7 0 chrX 41202868 41203164 -121396766 + AluSq SINE Alu 1 298 -15 3422 129 36 91 chrX 41203164 41203626 -121396304 + MER41B LTR ERV1 118 535 -100 1970 124 7 3 chrX 41203626 41203908 -121396022 - AluSq SINE Alu 0 313 31 3422 129 36 91 chrX 41203908 41204004 -121395926 + MER41B LTR ERV1 535 635 0 582 259 84 63 chrX 41204277 41204629 -121395301 + L2 LINE L2 2922 3284 -29 3330 68 35 11 chrX 41204629 41205083 -121394847 + MER4C LTR ERV1 1 465 0 582 259 84 63 chrX 41205083 41205109 -121394821 + L2 LINE L2 3284 3308 -5 1712 155 7 18 chrX 41205205 41205483 -121394447 + AluJb SINE Alu 1 275 -37 829 254 35 5 chrX 41205557 41205754 -121394176 + MIR SINE MIR 5 207 -55 616 24 0 24 chrX 41205906 41205990 -121393940 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 2112 127 0 0 chrX 41205990 41206273 -121393657 - AluSx SINE Alu -29 283 1 278 203 0 17 chrX 41206437 41206496 -121393434 - MLT1K LTR MaLR 0 588 531 876 268 100 48 chrX 41206540 41206961 -121392969 + LTR16A LTR ERVL 8 450 0 2444 168 28 76 chrX 41206969 41207546 -121392384 - MLT2B3 LTR ERVL -4 550 2 701 270 50 67 chrX 41207573 41207932 -121391998 - MLT1K LTR MaLR -109 479 127 1571 194 17 7 chrX 41208290 41208578 -121391352 + AluJb SINE Alu 1 291 -21 1720 144 18 89 chrX 41209069 41209396 -121390534 - AluJb SINE Alu -8 304 1 2437 87 3 0 chrX 41209746 41210045 -121389885 + AluSp SINE Alu 3 302 -11 32 0 0 0 chrX 41210277 41210309 -121389621 + AT_rich Low_complexity Low_complexity 1 32 0 1063 125 51 0 chrX 41210310 41210486 -121389444 - L1PB4 LINE L1 -12 6144 5960 909 150 0 92 chrX 41210898 41211071 -121388859 + FRAM SINE Alu 1 157 -9 1643 121 152 0 chrX 41211095 41211352 -121388578 + AluJb SINE Alu 1 296 -16 1458 159 12 0 chrX 41211473 41211725 -121388205 + L1MA8 LINE L1 6033 6287 -4 3625 98 74 53 chrX 41211834 41212078 -121387852 + L1MC1 LINE L1 5663 5900 -433 2319 97 3 0 chrX 41212078 41212378 -121387552 + AluSp SINE Alu 1 301 -12 3625 98 74 53 chrX 41212378 41212753 -121387177 + L1MC1 LINE L1 5900 6295 -38 849 119 0 0 chrX 41212753 41212871 -121387059 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chrX 41212873 41212896 -121387034 + AT_rich Low_complexity Low_complexity 1 23 0 583 159 19 234 chrX 41212907 41213066 -121386864 - L1M4 LINE L1 -2086 4060 3869 2209 100 0 4 chrX 41213066 41213347 -121386583 - AluSg SINE Alu -30 280 1 583 159 19 234 chrX 41213347 41213470 -121386460 - L1M4 LINE L1 -2277 3869 3868 2176 118 10 0 chrX 41213470 41213775 -121386155 - AluSx SINE Alu -4 308 1 583 159 19 234 chrX 41213775 41213850 -121386080 - L1M4 LINE L1 -2278 3868 3779 1042 220 57 29 chrX 41213875 41214225 -121385705 + L1M4 LINE L1 4120 4479 -1667 1298 273 47 41 chrX 41214414 41214755 -121385175 - MLT1H LTR MaLR -13 536 189 2213 98 19 7 chrX 41214755 41215062 -121384868 + AluSx SINE Alu 1 311 -1 1298 273 47 41 chrX 41215062 41215251 -121384679 - MLT1H LTR MaLR -360 189 3 2319 109 6 3 chrX 41215734 41216046 -121383884 - AluSq SINE Alu 0 313 1 1934 146 0 10 chrX 41216168 41216470 -121383460 + AluJb SINE Alu 1 299 -13 1368 301 39 5 chrX 41216816 41217228 -121382702 - LTR16A LTR ERVL 0 450 25 2155 125 0 3 chrX 41217324 41217619 -121382311 - AluSx SINE Alu -18 294 1 2177 89 10 26 chrX 41217827 41218129 -121381801 + AluSx SINE Alu 1 297 -15 2463 242 39 11 chrX 41218130 41218688 -121381242 + MLT1G LTR MaLR 17 590 0 248 258 155 0 chrX 41219910 41220007 -121379923 - MIR SINE MIR -99 163 52 1847 83 0 0 chrX 41220470 41220700 -121379230 - AluSg/x SINE Alu -4 308 79 1953 121 5 113 chrX 41220710 41220751 -121379179 - L1MB2 LINE L1 0 6171 6127 1545 157 34 44 chrX 41220751 41220944 -121378986 - AluJb SINE Alu -16 296 106 2135 104 0 4 chrX 41220944 41221223 -121378707 - AluSg SINE Alu -27 283 6 1545 157 34 44 chrX 41221223 41221323 -121378607 - AluJb SINE Alu -206 106 6 1953 121 5 113 chrX 41221323 41221445 -121378485 - L1MB2 LINE L1 -44 6127 5993 2422 101 0 0 chrX 41221445 41221751 -121378179 + AluSq SINE Alu 1 306 -7 1953 121 5 113 chrX 41221751 41222009 -121377921 - L1MB2 LINE L1 -178 5993 5836 2430 106 0 0 chrX 41222009 41222321 -121377609 - AluSq SINE Alu -1 312 1 1953 121 5 113 chrX 41222321 41222423 -121377507 - L1MB2 LINE L1 -335 5836 5725 2124 100 4 0 chrX 41222654 41222955 -121376975 - AluSx SINE Alu 0 302 1 2152 109 0 7 chrX 41223611 41223896 -121376034 - AluSx SINE Alu -29 283 1 37 23 0 0 chrX 41224299 41224343 -121375587 + AT_rich Low_complexity Low_complexity 1 44 0 2253 120 0 0 chrX 41224343 41224642 -121375288 + AluSx SINE Alu 1 299 -13 750 160 0 17 chrX 41224646 41224765 -121375165 - FLAM_C SINE Alu -16 117 1 2061 123 0 3 chrX 41224790 41225114 -121374816 - AluSx SINE Alu 0 323 1 2041 146 0 3 chrX 41225160 41225468 -121374462 + AluJo SINE Alu 1 307 -5 1922 149 3 27 chrX 41225628 41225924 -121374006 + AluSx SINE Alu 7 295 -17 2091 123 0 3 chrX 41225927 41226263 -121373667 + AluSp SINE Alu 1 335 0 208 186 198 35 chrX 41226533 41226619 -121373311 - MIR SINE MIR -18 244 145 1694 146 64 4 chrX 41226635 41226915 -121373015 - AluJo SINE Alu -15 297 1 315 272 160 0 chrX 41226999 41227124 -121372806 - MIR SINE MIR -112 150 6 2291 106 0 0 chrX 41227255 41227557 -121372373 + AluSp SINE Alu 1 302 -11 390 297 26 73 chrX 41227594 41227786 -121372144 + MLT1L LTR MaLR 1 183 -432 306 215 0 35 chrX 41227933 41228077 -121371853 + CT-rich Low_complexity Low_complexity 2 140 0 318 50 0 0 chrX 41228079 41228119 -121371811 + (CA)n Simple_repeat Simple_repeat 1 40 0 584 268 28 34 chrX 41228504 41228683 -121371247 - MER97b DNA MER1_type? -875 178 1 339 298 101 27 chrX 41228725 41228783 -121371147 - L1M4 LINE L1 -1314 4832 4780 592 200 200 15 chrX 41228783 41228918 -121371012 - FRAM SINE Alu -6 160 1 339 298 101 27 chrX 41228918 41229047 -121370883 - L1M4 LINE L1 -1366 4780 4631 32 0 0 0 chrX 41229175 41229207 -121370723 + AT_rich Low_complexity Low_complexity 1 32 0 2169 99 3 3 chrX 41229214 41229532 -121370398 - AluSg SINE Alu 0 318 1 1622 193 21 56 chrX 41229557 41229935 -121369995 + MLT1A1 LTR MaLR 1 365 0 2303 88 0 0 chrX 41229978 41230283 -121369647 - AluSq SINE Alu 0 305 1 592 274 116 9 chrX 41230393 41230608 -121369322 - L1MC4a LINE L1 -1834 5974 5737 496 185 0 67 chrX 41230626 41230745 -121369185 + L1ME1 LINE L1 5896 6006 -160 2166 96 0 46 chrX 41230768 41231070 -121368860 + AluSx SINE Alu 1 288 -24 284 258 0 0 chrX 41231071 41231137 -121368793 + L1MB7 LINE L1 6106 6171 -13 471 249 0 55 chrX 41231309 41231474 -121368456 + L2 LINE L2 3156 3311 -2 421 280 6 12 chrX 41231472 41231601 -121368329 - MER5A DNA MER1_type -41 139 8 * 979 216 104 49 chrX 41231689 41232179 -121367751 + MLT1H LTR MaLR 1 555 0 209 319 14 0 chrX 41232207 41232276 -121367654 + L2 LINE L2 2782 2851 -463 538 330 0 0 chrX 41232375 41232551 -121367379 + MIR SINE MIR 79 254 -8 335 213 113 81 chrX 41232564 41232724 -121367206 + L2 LINE L2 3149 3313 0 2362 98 0 0 chrX 41232934 41233241 -121366689 - AluSx SINE Alu -5 307 1 2235 108 7 16 chrX 41233250 41233557 -121366373 - AluSx SINE Alu -8 304 1 1729 176 3 19 chrX 41234216 41234528 -121365402 - AluJb SINE Alu -5 307 1 2128 137 0 0 chrX 41234549 41234849 -121365081 - AluSx SINE Alu -12 300 1 369 0 0 0 chrX 41234853 41234894 -121365036 + (TTG)n Simple_repeat Simple_repeat 2 42 0 559 238 14 7 chrX 41234922 41235069 -121364861 + L2 LINE L2 1793 1940 -1374 738 210 17 6 chrX 41235136 41235317 -121364613 - L1MD3 LINE L1 -1 7994 7812 2229 99 16 3 chrX 41235320 41235624 -121364306 + AluSq SINE Alu 1 308 -5 272 155 0 17 chrX 41235624 41235682 -121364248 + GA-rich Low_complexity Low_complexity 1 57 0 1491 187 102 67 chrX 41235786 41236188 -121363742 - L1MD2 LINE L1 -250 6109 5694 2973 175 35 10 chrX 41236189 41236878 -121363052 - L1ME LINE L1 -4767 1773 977 2149 115 41 44 chrX 41236878 41237243 -121362687 - THE1B LTR MaLR 0 364 1 2973 175 35 10 chrX 41237243 41237316 -121362614 - L1ME LINE L1 -5563 977 907 343 316 83 18 chrX 41237348 41237516 -121362414 - L1ME LINE L1 -5573 957 779 984 282 24 30 chrX 41237527 41237860 -121362070 - L1ME LINE L1 -6128 412 82 2056 138 0 0 chrX 41237865 41238163 -121361767 - AluJb SINE Alu -3 309 12 2031 290 98 6 chrX 41238282 41239204 -121360726 + L2 LINE L2 2127 3133 -180 676 268 170 53 chrX 41239204 41239311 -121360619 - MLT1H1 LTR MaLR 0 555 462 2320 94 3 0 chrX 41239311 41239609 -121360321 + AluSx SINE Alu 1 299 -13 676 268 170 53 chrX 41239609 41240025 -121359905 - MLT1H1 LTR MaLR -93 462 13 1901 158 0 0 chrX 41240071 41240388 -121359542 - AluJb SINE Alu 0 317 1 383 231 58 10 chrX 41240409 41240513 -121359417 + L2 LINE L2 3201 3309 -4 261 0 0 0 chrX 41240545 41240574 -121359356 + (CA)n Simple_repeat Simple_repeat 2 30 0 1666 160 32 21 chrX 41240673 41240955 -121358975 + AluJo SINE Alu 1 285 -27 2238 100 0 10 chrX 41241659 41241959 -121357971 + AluSq SINE Alu 1 297 -16 2277 115 0 10 chrX 41242790 41243103 -121356827 + AluSx SINE Alu 1 310 -2 2006 165 23 34 chrX 41243660 41244048 -121355882 - MLT1B LTR MaLR -3 387 4 1817 184 3 0 chrX 41244100 41244388 -121355542 - AluJo SINE Alu -23 289 1 668 250 121 0 chrX 41245043 41245267 -121354663 + MIR SINE MIR 12 262 0 22733 130 45 11 chrX 41245289 41247038 -121352892 + L1M1 LINE L1 1 1689 -5876 194 0 39 0 chrX 41247038 41247064 -121352866 + (GA)n Simple_repeat Simple_repeat 2 28 0 22733 130 45 11 chrX 41247064 41249067 -121350863 + L1M1 LINE L1 1689 3883 -3682 348 97 129 0 chrX 41249066 41249128 -121350802 + L1MA2 LINE L1 6046 6115 -189 * 2480 83 0 0 chrX 41249129 41249429 -121350501 - AluSq SINE Alu -13 300 1 363 189 27 0 chrX 41249430 41249504 -121350426 - L1ME LINE L1 -506 5615 5540 2172 181 136 51 chrX 41249851 41250160 -121349770 - REP3 LTR ERV 0 562 192 2078 133 0 10 chrX 41250160 41250494 -121349436 + AluSx SINE Alu 1 312 0 2172 181 136 51 chrX 41250494 41250692 -121349238 - REP3 LTR ERV -370 192 12 2021 129 0 14 chrX 41250736 41251031 -121348899 - AluJb SINE Alu -21 291 1 2211 103 3 28 chrX 41251079 41251302 -121348628 - AluSx SINE Alu 0 352 125 207 0 0 0 chrX 41251302 41251325 -121348605 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2050 131 3 0 chrX 41251325 41251607 -121348323 - AluSx SINE Alu -29 283 1 2211 103 3 28 chrX 41251607 41251742 -121348188 - AluSx SINE Alu -225 127 1 4787 148 8 14 chrX 41251749 41252445 -121347485 - L1 LINE L1 -1162 4984 4292 2015 149 0 13 chrX 41252445 41252754 -121347176 - AluJb SINE Alu -7 305 1 4787 148 8 14 chrX 41252754 41252904 -121347026 - L1 LINE L1 -1854 4292 4143 379 137 0 0 chrX 41253049 41253100 -121346830 - MER66B LTR ERV1 -142 344 294 430 261 29 71 chrX 41253346 41253528 -121346402 + MER69A DNA AcHobo 4 177 0 2204 81 7 21 chrX 41253606 41253891 -121346039 + AluSp SINE Alu 1 281 -32 1161 113 0 0 chrX 41253892 41254069 -121345861 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2272 107 0 0 chrX 41254555 41254900 -121345030 + AluSx SINE Alu 1 345 0 2260 101 0 16 chrX 41255069 41255377 -121344553 + AluSx SINE Alu 1 303 -9 374 132 0 15 chrX 41255381 41255449 -121344481 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 2160 109 3 3 chrX 41255503 41255797 -121344133 - AluSc SINE Alu -15 294 1 2056 128 0 7 chrX 41255831 41256128 -121343802 + AluSx SINE Alu 1 295 -17 2515 84 0 0 chrX 41256128 41256436 -121343494 + AluSc SINE Alu 1 309 0 545 107 0 24 chrX 41257129 41257213 -121342717 + AluJo/FLAM SINE Alu 52 133 -179 * 699 188 14 29 chrX 41257209 41257347 -121342583 + AluJo SINE Alu 96 231 -81 217 150 0 25 chrX 41257363 41257403 -121342527 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1671 149 23 50 chrX 41257429 41257572 -121342358 + AluJo SINE Alu 1 146 -166 2121 122 20 0 chrX 41257572 41257866 -121342064 + AluJb SINE Alu 1 300 -12 1671 149 23 50 chrX 41257866 41258024 -121341906 + AluJo SINE Alu 146 294 -18 957 207 67 74 chrX 41258130 41258594 -121341336 + MLT1H1 LTR MaLR 9 595 0 2130 132 0 3 chrX 41258747 41259050 -121340880 - AluSx SINE Alu -10 302 1 248 297 63 27 chrX 41260029 41260140 -121339790 + MIR SINE MIR 17 131 -77 24 32 0 0 chrX 41260212 41260243 -121339687 + AT_rich Low_complexity Low_complexity 1 31 0 2478 92 0 0 chrX 41260458 41260762 -121339168 + AluSx SINE Alu 1 304 -8 231 250 83 14 chrX 41261205 41261277 -121338653 - L2 LINE L2 0 3272 3196 2503 63 0 0 chrX 41261310 41261609 -121338321 - AluSg SINE Alu -11 299 1 2341 63 0 50 chrX 41261622 41261939 -121337991 - AluSc SINE Alu -8 301 1 2433 66 7 3 chrX 41261967 41262271 -121337659 + AluSq SINE Alu 1 305 -8 1633 118 17 88 chrX 41262402 41262698 -121337232 + AluJo SINE Alu 5 279 -33 593 0 28 0 chrX 41262698 41262770 -121337160 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 24 32 0 0 chrX 41265603 41265634 -121334296 + AT_rich Low_complexity Low_complexity 1 31 0 2014 156 0 0 chrX 41265638 41265946 -121333984 + AluJb SINE Alu 1 308 -4 2368 81 0 16 chrX 41266340 41266648 -121333282 - AluSx SINE Alu -9 303 1 1173 226 215 48 chrX 41267689 41268166 -121331764 - MLT1G1 LTR MaLR 0 595 1 421 95 0 0 chrX 41268214 41268277 -121331653 - L1MB8 LINE L1 -6 6172 6110 2057 119 14 7 chrX 41268298 41268583 -121331347 - AluSx SINE Alu -25 287 1 338 116 14 14 chrX 41268584 41268653 -121331277 - L1MA4 LINE L1 -248 6052 5984 1261 107 0 19 chrX 41268654 41268859 -121331071 + L1MA4 LINE L1 6094 6294 -6 3185 143 73 19 chrX 41268883 41269374 -121330556 - L1MB7 LINE L1 -57 6127 5597 2525 66 0 0 chrX 41269374 41269675 -121330255 - AluY SINE Alu -10 301 1 3185 143 73 19 chrX 41269675 41269769 -121330161 - L1MB7 LINE L1 -587 5597 5510 987 137 0 0 chrX 41270203 41270342 -121329588 - AluSq/x SINE Alu -173 139 1 21 57 0 0 chrX 41270470 41270505 -121329425 + AT_rich Low_complexity Low_complexity 1 35 0 7027 34 1 4 chrX 41270553 41271390 -121328540 - L1PA5 LINE L1 -6 6148 5316 4609 150 37 53 chrX 41271801 41272139 -121327791 - L1ME1 LINE L1 0 6166 5824 1869 156 3 10 chrX 41272139 41272434 -121327496 - AluJb SINE Alu -19 293 1 4609 150 37 53 chrX 41272434 41272665 -121327265 - L1ME1 LINE L1 -342 5824 5591 251 250 31 0 chrX 41272665 41272676 -121327254 + AluYb8 SINE Alu 124 136 -172 1906 142 6 22 chrX 41272676 41272992 -121326938 + AluJo SINE Alu 2 312 0 4609 150 37 53 chrX 41272729 41273100 -121326830 - L1ME1 LINE L1 -575 5591 5499 1666 165 3 24 chrX 41273100 41273397 -121326533 - AluJo SINE Alu -21 291 1 4609 150 37 53 chrX 41273397 41273802 -121326128 - L1ME1 LINE L1 -667 5499 5089 594 91 0 0 chrX 41273802 41273879 -121326051 - AluSc SINE Alu -14 295 219 329 195 0 13 chrX 41273880 41273957 -121325973 + (TA)n Simple_repeat Simple_repeat 1 76 0 286 293 0 14 chrX 41274025 41274172 -121325758 + (TA)n Simple_repeat Simple_repeat 2 146 0 245 214 0 0 chrX 41274172 41274228 -121325702 + L1MC4 LINE L1 6648 6703 -1339 * 265 194 0 42 chrX 41274197 41274269 -121325661 + L1MCa LINE L1 1996 2064 -4362 239 133 0 0 chrX 41274289 41274334 -121325596 - LTR66 LTR ERVL -172 438 394 615 219 45 19 chrX 41274335 41274490 -121325440 + MIR SINE MIR 83 241 -21 2432 81 3 0 chrX 41274742 41275052 -121324878 - AluSq SINE Alu -2 311 1 2053 136 0 3 chrX 41275115 41275410 -121324520 + AluJb SINE Alu 1 294 -18 1205 122 0 33 chrX 41275562 41275743 -121324187 - AluJb SINE Alu -18 294 120 456 256 33 25 chrX 41275794 41275915 -121324015 - FLAM_A SINE Alu -11 122 1 759 176 84 16 chrX 41276155 41276340 -121323590 + MLT1B LTR MaLR 1 188 -186 1167 122 17 6 chrX 41276415 41276587 -121323343 - MLT1A1 LTR MaLR -14 351 178 249 254 51 0 chrX 41277227 41277286 -121322644 + L2 LINE L2 3251 3312 -1 2266 105 3 0 chrX 41277723 41278018 -121321912 + AluSq SINE Alu 1 296 -17 2215 96 3 13 chrX 41278018 41278153 -121321777 + AluY SINE Alu 1 136 -175 1749 102 117 11 chrX 41278153 41278427 -121321503 + AluSc SINE Alu 1 303 -6 2215 96 3 13 chrX 41278427 41278593 -121321337 + AluY SINE Alu 136 299 -12 503 154 0 10 chrX 41278593 41278697 -121321233 + GA-rich Low_complexity Low_complexity 1 103 0 2155 126 0 0 chrX 41278942 41279251 -121320679 - AluSx SINE Alu -3 309 1 220 283 17 0 chrX 41279748 41279808 -121320122 + L2 LINE L2 3250 3310 -3 183 200 0 0 chrX 41280825 41280855 -121319075 - L2 LINE L2 -23 3290 3261 241 233 70 35 chrX 41280858 41280944 -121318986 + HsTC2 DNA Tc2 2 90 -1808 181 255 0 21 chrX 41280980 41281027 -121318903 - L2 LINE L2 -84 3229 3184 2183 109 0 10 chrX 41281140 41281434 -121318496 - AluSc SINE Alu -18 291 1 2329 88 3 0 chrX 41281841 41282135 -121317795 - AluSx SINE Alu -17 295 1 1080 226 33 0 chrX 41282785 41283028 -121316902 - MIR SINE MIR 0 262 12 2337 83 0 0 chrX 41283648 41283949 -121315981 + AluSg1 SINE Alu 1 301 -8 1832 150 3 11 chrX 41284843 41285129 -121314801 - AluJo SINE Alu -16 296 13 854 228 89 0 chrX 41285304 41285506 -121314424 + MIR SINE MIR 32 251 -11 1953 155 3 22 chrX 41285569 41285886 -121314044 + AluJo SINE Alu 1 311 -1 311 186 48 131 chrX 41285901 41286046 -121313884 - L1ME4a LINE L1 -246 5875 5743 210 342 132 9 chrX 41287662 41287776 -121312154 + L3 LINE CR1 1235 1362 -215 2354 221 125 84 chrX 41287821 41287931 -121311999 + L1MC4 LINE L1 6903 7007 -1035 1724 188 14 0 chrX 41287931 41288224 -121311706 + AluJo SINE Alu 1 297 -15 2354 221 125 84 chrX 41288224 41288460 -121311470 + L1MC4 LINE L1 7007 7232 -810 2192 98 11 0 chrX 41288460 41288746 -121311184 + AluSg SINE Alu 1 289 -21 2490 43 0 0 chrX 41288747 41289060 -121310870 + AluY SINE Alu 1 313 0 2354 221 125 84 chrX 41289060 41289804 -121310126 + L1MC4 LINE L1 7231 8042 0 1229 157 60 51 chrX 41289940 41290157 -121309773 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chrX 41290268 41290291 -121309639 + AT_rich Low_complexity Low_complexity 1 23 0 1941 116 36 4 chrX 41290398 41290674 -121309256 + AluJb SINE Alu 1 285 -27 788 183 0 0 chrX 41290712 41290843 -121309087 - AluJb SINE Alu -9 303 173 1426 169 0 0 chrX 41290860 41291079 -121308851 - AluJo SINE Alu -93 219 1 193 350 10 21 chrX 41291085 41291182 -121308748 + MER5A DNA MER1_type 68 163 -26 535 176 25 42 chrX 41291232 41291351 -121308579 - L2 LINE L2 -466 2848 2732 5844 189 148 75 chrX 41291351 41291885 -121308045 - L1MC3 LINE L1 0 7785 7292 414 264 0 0 chrX 41291885 41291976 -121307954 - MLT1F1 LTR MaLR -442 125 35 5844 189 148 75 chrX 41291976 41292016 -121307914 - L1MC3 LINE L1 -493 7292 7256 2369 75 7 3 chrX 41292016 41292308 -121307622 + AluSc SINE Alu 1 293 -16 5844 189 148 75 chrX 41292308 41293461 -121306469 - L1MC3 LINE L1 -529 7256 5810 2432 84 0 0 chrX 41293461 41293769 -121306161 - AluSx SINE Alu -4 308 1 5844 189 148 75 chrX 41293769 41293907 -121306023 - L1MC3 LINE L1 -1975 5810 5684 448 93 81 0 chrX 41293907 41293993 -121305937 - L1MB3 LINE L1 -1 6182 6090 2829 133 27 11 chrX 41294002 41294554 -121305376 - L1MA4 LINE L1 -272 6030 5428 326 150 0 0 chrX 41294551 41294611 -121305319 - L1MD3 LINE L1 0 7995 7936 * 1331 123 0 11 chrX 41294611 41294798 -121305132 + AluJo SINE Alu 1 185 -127 2310 89 3 7 chrX 41294871 41295175 -121304755 + AluSx SINE Alu 1 303 -9 1813 151 0 30 chrX 41295182 41295486 -121304444 + AluJb SINE Alu 1 295 -17 770 174 0 8 chrX 41295503 41295624 -121304306 + FLAM_C SINE Alu 6 125 -18 2190 66 63 3 chrX 41295663 41295950 -121303980 - AluSp SINE Alu -9 304 1 2539 60 3 0 chrX 41295975 41296275 -121303655 - AluSp SINE Alu -10 303 3 1148 160 55 5 chrX 41296277 41296477 -121303453 + MER82 DNA MER2_type 145 354 -299 1750 166 10 14 chrX 41296481 41296777 -121303153 - AluJo SINE Alu -17 295 1 874 132 0 0 chrX 41296800 41296921 -121303009 - FLAM_C SINE Alu -22 121 1 1590 195 24 10 chrX 41296923 41297221 -121302709 + MER82 DNA MER2_type 351 652 -1 460 176 11 0 chrX 41297230 41297321 -121302609 - L1M4 LINE L1 -3128 3018 2927 366 188 0 16 chrX 41297325 41297389 -121302541 + MER58A DNA MER1_type 30 92 -15 2397 73 37 0 chrX 41297390 41297690 -121302240 - AluSq SINE Alu -2 311 1 425 154 0 0 chrX 41297713 41297778 -121302152 + MER58A DNA MER1_type 160 224 0 2041 206 25 5 chrX 41297778 41298210 -121301720 - L1M4 LINE L1 -3206 2940 2500 1418 124 0 25 chrX 41348210 41348412 -121251518 - AluJb SINE Alu -115 197 1 1129 254 51 19 chrX 41348414 41348729 -121251201 - L1ME LINE L1 -402 5768 5444 1446 183 28 53 chrX 41348749 41349071 -121250859 - L1ME2 LINE L1 -9 6155 5842 1129 206 71 4 chrX 41349068 41349320 -121250610 + L1MD2 LINE L1 5686 5954 -405 * 2894 235 28 3 chrX 41349296 41349931 -121249999 - L1MB7 LINE L1 0 6578 5928 456 206 85 28 chrX 41349931 41350219 -121249711 - L1MB7 LINE L1 -3427 3113 1630 895 84 0 0 chrX 41350240 41350359 -121249571 - AluSx SINE Alu 0 310 192 328 114 0 0 chrX 41350360 41350404 -121249526 - AluSx SINE Alu -162 141 98 642 168 9 0 chrX 41350404 41350517 -121249413 + AluSc SINE Alu 132 245 -64 1719 86 5 0 chrX 41350519 41350739 -121249191 + AluSq SINE Alu 85 305 -8 451 263 0 0 chrX 41351668 41351767 -121248163 + MER5B DNA MER1_type 1 99 -79 3214 204 73 32 chrX 41351767 41352007 -121247923 - L1M4 LINE L1 -2929 3217 2988 2169 94 28 0 chrX 41352007 41352293 -121247637 - AluSq SINE Alu -19 294 1 3214 204 73 32 chrX 41352293 41352407 -121247523 - L1M4 LINE L1 -3158 2988 2880 2364 104 0 0 chrX 41352407 41352714 -121247216 - AluSx SINE Alu -5 307 1 3214 204 73 32 chrX 41352714 41353264 -121246666 - L1M4 LINE L1 -3266 2880 2275 1075 172 0 0 chrX 41353264 41353427 -121246503 - FRAM SINE Alu -20 156 1 226 188 62 0 chrX 41353517 41353565 -121246365 + L1MC4a LINE L1 7753 7803 -5 24 67 0 0 chrX 41353575 41353620 -121246310 + AT_rich Low_complexity Low_complexity 1 45 0 414 289 90 6 chrX 41354818 41354984 -121244946 - L3 LINE CR1 -63 1514 1335 307 228 251 39 chrX 41355053 41355312 -121244618 + L2 LINE L2 1713 2026 -1288 266 192 51 26 chrX 41355450 41355528 -121244402 + GA-rich Low_complexity Low_complexity 4 83 0 630 361 55 27 chrX 41355615 41356127 -121243803 + L2 LINE L2 2378 2903 -411 1150 168 59 5 chrX 41356928 41357131 -121242799 + MER58 DNA MER1_type 3 216 -125 2211 199 169 4 chrX 41357132 41357630 -121242300 - MLT1G LTR MaLR 0 590 11 1679 209 67 24 chrX 41357958 41358374 -121241556 + MLT1H LTR MaLR 114 547 -2 2049 111 0 0 chrX 41358728 41359008 -121240922 + AluSg SINE Alu 18 297 -13 522 127 13 0 chrX 41359018 41359097 -121240833 - MER116 DNA Mariner 0 80 1 3174 183 30 2 chrX 41361058 41361600 -121238330 - MER68 LTR ERV1 0 562 6 568 267 83 92 chrX 41362009 41362454 -121237476 + L2 LINE L2 2832 3272 0 410 289 132 26 chrX 41362585 41362775 -121237155 + MLT1K LTR MaLR 369 578 -10 314 326 52 15 chrX 41363117 41363252 -121236678 + L3 LINE CR1 253 392 -1185 445 290 351 15 chrX 41363355 41363813 -121236117 + L3 LINE CR1 583 1194 -383 469 323 101 4 chrX 41363822 41364070 -121235860 + L1ME3A LINE L1 5555 5826 -344 1244 265 86 8 chrX 41364081 41364432 -121235498 - MLT1I LTR MaLR -3 406 29 437 0 0 19 chrX 41364588 41364642 -121235288 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1724 157 27 10 chrX 41364733 41365026 -121234904 + AluJb SINE Alu 11 308 -4 291 230 26 18 chrX 41365033 41365146 -121234784 + GA-rich Low_complexity Low_complexity 1 114 0 1180 141 0 11 chrX 41365151 41365335 -121234595 + FRAM SINE Alu 1 176 0 2225 92 3 7 chrX 41365484 41365795 -121234135 + AluSx SINE Alu 1 312 0 371 321 9 19 chrX 41366048 41366154 -121233776 + L3 LINE CR1 1461 1565 -12 2372 116 0 0 chrX 41366993 41367304 -121232626 + AluSx SINE Alu 1 311 -1 239 277 62 54 chrX 41368293 41368423 -121231507 + L1ME LINE L1 328 458 -5938 2206 87 24 0 chrX 41368844 41369132 -121230798 - AluSx SINE Alu -17 295 1 1629 199 65 91 chrX 41369455 41369785 -121230145 + L1ME LINE L1 783 1089 -5320 717 236 0 0 chrX 41369785 41369908 -121230022 + FLAM_A SINE Alu 1 123 -10 1629 199 65 91 chrX 41369908 41370234 -121229696 + L1ME LINE L1 1089 1422 -4987 2179 98 7 3 chrX 41370247 41370543 -121229387 - AluSx SINE Alu -10 302 6 1673 175 0 3 chrX 41370643 41370940 -121228990 + AluY SINE Alu 1 296 -15 784 198 64 12 chrX 41371156 41371328 -121228602 + MER58B DNA MER1_type 1 181 -160 2180 121 3 0 chrX 41371328 41371625 -121228305 - AluSx SINE Alu -14 298 1 228 111 0 0 chrX 41371625 41371661 -121228269 - L1M4 LINE L1 -3175 2971 2936 2208 100 13 0 chrX 41371729 41372028 -121227902 - AluSx SINE Alu -9 303 1 1054 161 0 6 chrX 41372030 41372198 -121227732 + MER58B DNA MER1_type 175 341 0 2218 99 3 0 chrX 41372928 41373240 -121226690 + AluSp SINE Alu 1 313 0 2380 71 3 7 chrX 41373251 41373545 -121226385 + AluSx SINE Alu 1 293 -19 1132 164 36 36 chrX 41373997 41374216 -121225714 - MER20 DNA MER1_type 0 219 1 400 246 103 112 chrX 41374683 41374837 -121225093 - L1ME LINE L1 -303 5818 5665 2361 94 0 25 chrX 41374837 41375157 -121224773 - AluSx SINE Alu 0 312 1 400 246 103 112 chrX 41375157 41375226 -121224704 - L1ME LINE L1 -456 5665 5597 973 163 18 98 chrX 41376157 41376207 -121223723 - L1MA10 LINE L1 -29 6305 6253 2122 122 3 0 chrX 41376207 41376493 -121223437 + AluSx SINE Alu 1 287 -25 973 163 18 98 chrX 41376493 41376719 -121223211 - L1MA10 LINE L1 -81 6253 6051 508 211 77 0 chrX 41376771 41376927 -121223003 - LTR16A1 LTR ERVL -4 453 286 257 239 33 54 chrX 41377010 41377102 -121222828 - LTR16A1 LTR ERVL -347 110 21 239 321 52 76 chrX 41377129 41377242 -121222688 - L2 LINE L2 -30 3242 3128 1199 110 110 10 chrX 41377242 41377451 -121222479 + MER30 DNA MER1_type 1 230 0 239 321 52 76 chrX 41377451 41377823 -121222107 - L2 LINE L2 -144 3128 2773 271 295 0 13 chrX 41377910 41377988 -121221942 + MIR SINE MIR 67 143 -119 1861 189 32 12 chrX 41378665 41379003 -121220927 - L1MC/D LINE L1 -564 6489 6140 2502 82 7 0 chrX 41379003 41379309 -121220621 - AluSx SINE Alu -4 308 1 1861 189 32 12 chrX 41379309 41379414 -121220516 - L1MC/D LINE L1 -913 6140 6039 598 179 16 8 chrX 41379419 41379542 -121220388 - L1ME LINE L1 -748 5611 5488 255 208 78 0 chrX 41379555 41379632 -121220298 - L1MC/D LINE L1 -906 6051 5969 528 127 0 0 chrX 41379637 41379716 -121220214 - LTR23 LTR ERV1 -34 403 325 716 188 64 15 chrX 41379721 41379923 -121220007 - L1MC/D LINE L1 -974 5983 5772 1880 207 63 22 chrX 41379923 41380382 -121219548 + MLT1D LTR MaLR 26 503 -2 501 162 36 9 chrX 41380808 41380919 -121219011 - L1MB7 LINE L1 0 6184 6071 4011 188 149 103 chrX 41380927 41381957 -121217973 - L1MC/D LINE L1 -4803 2156 1175 1291 90 0 0 chrX 41381957 41382123 -121217807 - AluSq SINE Alu -12 301 136 4011 188 149 103 chrX 41382123 41383014 -121216916 - L1MC/D LINE L1 -5784 1175 4 2339 148 48 17 chrX 41384963 41385381 -121214549 + MSTB1 LTR MaLR 2 432 0 1518 251 42 40 chrX 41386044 41386518 -121213412 - MLT1E LTR MaLR 0 593 119 546 100 0 0 chrX 41386516 41386596 -121213334 - MLT1E LTR MaLR -427 166 87 * 298 333 6 57 chrX 41387231 41387390 -121212540 + MER5A DNA MER1_type 14 164 -25 321 275 132 54 chrX 41387424 41387591 -121212339 - MIR SINE MIR -74 188 9 2251 109 0 0 chrX 41387975 41388277 -121211653 - AluSg SINE Alu -8 302 1 4311 192 73 21 chrX 41388439 41389626 -121210304 - L1MDa LINE L1 -4477 2063 815 384 319 59 0 chrX 41389659 41389794 -121210136 - L1MDa LINE L1 -5819 721 579 1905 130 34 8 chrX 41389822 41390175 -121209755 - L1MB7 LINE L1 -9 6569 6208 330 115 0 0 chrX 41390175 41390227 -121209703 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 2299 98 10 0 chrX 41390229 41390525 -121209405 - AluSp SINE Alu -14 299 1 1630 158 3 19 chrX 41390525 41390835 -121209095 - L1MB7 LINE L1 -356 6222 5918 367 267 52 64 chrX 41390843 41391094 -121208836 - L1MCb LINE L1 -5205 840 593 624 258 93 29 chrX 41391455 41391734 -121208196 - L1MCb LINE L1 -5683 362 66 320 170 0 10 chrX 41392170 41392243 -121207687 + Alu SINE Alu 1 47 -255 696 293 98 5 chrX 41393949 41394164 -121205766 - MIR SINE MIR -8 254 20 2498 70 0 0 chrX 41394170 41394469 -121205461 - AluY SINE Alu -12 299 1 2367 81 0 3 chrX 41395179 41395475 -121204455 - AluSc SINE Alu -14 295 1 1058 223 86 66 chrX 41395583 41396041 -121203889 - MLT1D LTR MaLR 0 467 1 1844 149 0 48 chrX 41396361 41396670 -121203260 + AluJb SINE Alu 1 294 -18 813 220 35 9 chrX 41396670 41396891 -121203039 + L1MD3 LINE L1 7751 7980 -15 1190 217 30 110 chrX 41397767 41397811 -121202119 - MSTD LTR MaLR 0 396 350 2026 115 0 21 chrX 41397811 41398137 -121201793 - AluSg SINE Alu 0 320 1 1190 217 30 110 chrX 41398137 41398519 -121201411 - MSTD LTR MaLR -46 350 3 506 68 45 0 chrX 41398538 41398626 -121201304 + (TA)n Simple_repeat Simple_repeat 1 92 0 215 311 0 27 chrX 41398941 41399015 -121200915 + L2 LINE L2 3201 3272 0 1923 157 7 7 chrX 41399686 41399991 -121199939 - AluSx SINE Alu -7 305 1 1050 194 21 11 chrX 41400348 41400534 -121199396 - MER5A DNA MER1_type 0 189 2 1230 264 26 14 chrX 41401023 41401447 -121198483 - L1MB7 LINE L1 -769 5771 5343 * 2109 218 21 37 chrX 41401443 41402295 -121197635 - L1MB7 LINE L1 -1409 5131 4197 920 131 124 9 chrX 41402298 41402584 -121197346 - MLT1A2 LTR MaLR -1 373 1 288 164 45 0 chrX 41402717 41402851 -121197079 + (TA)n Simple_repeat Simple_repeat 1 140 0 200 136 68 0 chrX 41402879 41402938 -121196992 + (TA)n Simple_repeat Simple_repeat 1 63 0 337 164 17 0 chrX 41402961 41403077 -121196853 + (TA)n Simple_repeat Simple_repeat 1 118 0 1842 156 0 3 chrX 41403083 41403366 -121196564 - AluJb SINE Alu -30 282 1 807 242 37 54 chrX 41403366 41403571 -121196359 - L1MB7 LINE L1 -2459 4081 3883 1741 173 20 10 chrX 41403571 41403872 -121196058 - AluJb SINE Alu -7 305 2 807 242 37 54 chrX 41403872 41404017 -121195913 - L1MB7 LINE L1 -2657 3883 3737 1955 211 86 26 chrX 41404050 41404376 -121195554 + L1MDa LINE L1 17 322 -6218 2102 138 13 0 chrX 41404376 41404681 -121195249 - AluSx SINE Alu -3 309 1 1955 211 86 26 chrX 41404681 41405325 -121194605 + L1MDa LINE L1 322 1246 -5294 3506 215 60 24 chrX 41405330 41405420 -121194510 - L1MB7 LINE L1 -2845 3695 3610 2038 122 0 50 chrX 41405420 41405740 -121194190 - AluJb SINE Alu -8 304 1 3506 215 60 24 chrX 41405740 41406111 -121193819 - L1MB7 LINE L1 -2930 3610 3254 928 143 0 0 chrX 41406111 41406244 -121193686 - FLAM_C SINE Alu 0 133 1 3506 215 60 24 chrX 41406244 41406948 -121192982 - L1MB7 LINE L1 -3286 3254 2480 441 0 0 0 chrX 41406948 41406997 -121192933 + (TG)n Simple_repeat Simple_repeat 2 50 0 3506 215 60 24 chrX 41406997 41407056 -121192874 - L1MB7 LINE L1 -4060 2480 2425 477 246 21 0 chrX 41407053 41407195 -121192735 + L1M4 LINE L1 3416 3560 -2586 * 3360 181 28 5 chrX 41407196 41407866 -121192064 + Tigger6a DNA MER2_type 398 1083 0 416 236 104 60 chrX 41407866 41408048 -121191882 + L1ME2 LINE L1 5949 6138 -26 1887 146 3 36 chrX 41408181 41408482 -121191448 + AluJb SINE Alu 1 291 -21 2068 170 0 0 chrX 41408753 41409065 -121190865 - AluJo SINE Alu 0 312 1 2225 78 44 0 chrX 41409362 41409656 -121190274 - AluSp SINE Alu -6 307 1 1070 174 26 0 chrX 41409670 41409860 -121190070 - L1MB7 LINE L1 -19 6165 5971 522 92 1 28 chrX 41409860 41409946 -121189984 - MLT1B LTR MaLR -1 389 315 207 100 0 0 chrX 41409946 41409976 -121189954 + (TC)n Simple_repeat Simple_repeat 2 31 0 1143 217 42 45 chrX 41409976 41410312 -121189618 - MLT1B LTR MaLR -55 335 1 3150 131 13 75 chrX 41410312 41410982 -121188948 - L1MB7 LINE L1 -208 5976 5348 1792 163 29 78 chrX 41411172 41411440 -121188490 - L1M LINE L1 -782 5364 5197 1909 168 3 0 chrX 41411440 41411731 -121188199 + AluJo SINE Alu 1 292 -20 1792 163 29 78 chrX 41411731 41412011 -121187919 - L1M LINE L1 -949 5197 4905 1842 166 3 14 chrX 41412158 41412454 -121187476 - AluJo SINE Alu -19 293 1 8211 104 38 21 chrX 41412567 41413843 -121186087 - HSMAR2 DNA Mariner -2 1300 3 2270 101 7 7 chrX 41414440 41414736 -121185194 + AluSx SINE Alu 1 296 -16 1146 131 25 0 chrX 41414861 41415021 -121184909 - AluJb SINE Alu -9 303 140 858 261 77 56 chrX 41415027 41415418 -121184512 - MLT1J2 LTR MaLR -47 403 5 195 306 0 0 chrX 41415448 41415497 -121184433 + L2 LINE L2 3160 3208 -64 771 289 43 8 chrX 41415569 41415804 -121184126 - MLT1H1 LTR MaLR -311 244 2 788 171 8 0 chrX 41415828 41415957 -121183973 - FLAM_A SINE Alu -1 132 3 994 227 34 65 chrX 41416942 41417233 -121182697 + L2 LINE L2 2260 2541 -773 2558 40 0 3 chrX 41417476 41417774 -121182156 - AluY SINE Alu -14 297 1 1643 232 86 12 chrX 41417832 41418359 -121181571 - MLT1G LTR MaLR -2 588 46 1071 171 0 0 chrX 41418526 41418690 -121181240 - FRAM SINE Alu -13 163 1 2346 101 0 0 chrX 41419189 41419486 -121180444 + AluSx SINE Alu 1 297 -15 2084 253 69 31 chrX 41419855 41419973 -121179957 - L1ME3A LINE L1 -5 6165 6053 1534 168 8 0 chrX 41419973 41420217 -121179713 + AluJo SINE Alu 1 246 -66 2084 253 69 31 chrX 41420217 41421189 -121178741 - L1ME3A LINE L1 -117 6053 5032 3411 71 41 5 chrX 41422251 41422689 -121177241 - L1PA11 LINE L1 -1 6173 5720 208 278 80 66 chrX 41422714 41422766 -121177164 - MIR SINE MIR -109 153 103 2324 91 3 3 chrX 41422766 41423074 -121176856 + AluSg SINE Alu 1 308 -2 208 278 80 66 chrX 41423074 41423172 -121176758 - MIR SINE MIR -159 103 1 1721 172 0 30 chrX 41423342 41423639 -121176291 + AluJo SINE Alu 1 288 -24 1402 112 45 41 chrX 41425437 41425706 -121174224 - L1MD3 LINE L1 0 7995 7726 618 333 15 0 chrX 41425841 41426036 -121173894 - MIR SINE MIR -18 244 47 235 247 282 12 chrX 41427732 41427817 -121172113 - MIR3 SINE MIR -10 198 91 362 321 87 69 chrX 41428148 41428596 -121171334 - L2 LINE L2 -1 3271 2816 181 171 146 0 chrX 41428652 41428693 -121171237 - L2 LINE L2 -586 2728 2682 1222 263 27 6 chrX 41428973 41429304 -121170626 + MER46C DNA MER2_type 1 338 0 2397 85 0 0 chrX 41429910 41430203 -121169727 + AluSg SINE Alu 1 293 -17 1753 169 38 0 chrX 41430734 41431024 -121168906 + AluJb SINE Alu 1 301 -11 704 198 115 0 chrX 41431373 41431530 -121168400 - MER58C DNA MER1_type -1 214 40 1192 206 135 32 chrX 41433287 41433704 -121166226 - L1ME2 LINE L1 -10 6154 5689 2248 61 0 50 chrX 41433728 41434054 -121165876 - AluY SINE Alu 0 311 1 1062 51 14 8 chrX 41434981 41435002 -121164928 - L1P LINE L1 -801 5355 5336 2084 136 0 3 chrX 41435002 41435303 -121164627 + AluJb SINE Alu 2 301 -11 1062 51 14 8 chrX 41435303 41435441 -121164489 - L1P LINE L1 -820 5336 5192 7730 8 0 1 chrX 41435441 41436261 -121163669 + L1PA2 LINE L1 5334 6153 -2 1575 130 91 75 chrX 41436643 41436781 -121163149 + AluJo SINE Alu 1 135 -177 5884 88 6 46 chrX 41436781 41437656 -121162274 - L1MA2 LINE L1 0 6304 5465 1575 130 91 75 chrX 41437656 41437824 -121162106 + AluJo SINE Alu 135 312 0 236 250 30 83 chrX 41438263 41438395 -121161535 + MARNA DNA Mariner 73 197 -389 * 358 252 0 28 chrX 41438329 41438436 -121161494 - MARNA DNA Mariner -138 448 345 2253 133 14 17 chrX 41438536 41438890 -121161040 - L1PA16 LINE L1 0 6166 5814 1691 113 74 12 chrX 41438890 41439145 -121160785 - L1PA15 LINE L1 0 6165 5893 3720 90 98 0 chrX 41439388 41439868 -121160062 + MER1A DNA MER1_type 1 527 0 755 221 6 6 chrX 41439883 41440041 -121159889 - L1MC5 LINE L1 -1114 6847 6690 214 333 58 81 chrX 41440201 41440375 -121159555 + L2 LINE L2 3103 3272 0 1648 141 52 38 chrX 41440533 41440823 -121159107 - AluJo SINE Alu -14 298 5 2083 108 28 3 chrX 41440823 41441110 -121158820 - AluSx SINE Alu -18 294 1 1290 179 9 22 chrX 41441117 41441346 -121158584 - AluJo SINE Alu 0 312 87 15678 135 31 10 chrX 41441742 41442678 -121157252 + L1MB7 LINE L1 1355 2269 -5296 2538 79 0 0 chrX 41442678 41442983 -121156947 + AluY SINE Alu 1 305 -6 15678 135 31 10 chrX 41442983 41445829 -121154101 + L1MB7 LINE L1 2269 5216 -2349 1166 168 5 0 chrX 41445826 41446023 -121153907 - L1 LINE L1 -2176 3970 3773 * 475 84 0 0 chrX 41446017 41446088 -121153842 + L1MA2 LINE L1 6130 6200 -104 * 552 242 0 0 chrX 41446191 41446286 -121153644 + AluJ/FLAM SINE Alu 2 96 -216 2276 110 0 7 chrX 41446405 41446714 -121153216 + AluSp SINE Alu 1 307 -6 1205 162 69 0 chrX 41446714 41446918 -121153012 + L1MB7 LINE L1 6851 7068 -535 2944 179 40 18 chrX 41446928 41447474 -121152456 - MER77 LTR ERV1 -7 598 41 2822 156 49 8 chrX 41447489 41447997 -121151933 + L1MB7 LINE L1 7065 7593 -10 30 45 0 0 chrX 41448126 41448170 -121151760 + AT_rich Low_complexity Low_complexity 1 44 0 2090 90 69 3 chrX 41448316 41448606 -121151324 - AluSg1 SINE Alu 0 309 1 1833 133 54 4 chrX 41448607 41448886 -121151044 - AluJb SINE Alu -19 293 1 1357 97 0 0 chrX 41448890 41449066 -121150864 - AluSg/x SINE Alu 0 312 137 1533 173 28 0 chrX 41449126 41449374 -121150556 - AluJo SINE Alu -57 255 1 1438 162 62 7 chrX 41449397 41449669 -121150261 - L1MA6 LINE L1 -4 6296 6010 210 344 159 0 chrX 41450128 41450285 -121149645 + L3 LINE CR1 1346 1527 -50 2270 93 0 17 chrX 41450650 41450951 -121148979 + AluSx SINE Alu 1 296 -16 2033 124 7 0 chrX 41450954 41451236 -121148694 + AluSx SINE Alu 1 284 -28 567 135 155 140 chrX 41451466 41451490 -121148440 + MER3 DNA MER1_type 7 29 -180 2255 113 0 7 chrX 41451490 41451800 -121148130 + AluSx SINE Alu 1 308 -4 567 135 155 140 chrX 41451800 41451914 -121148016 + MER3 DNA MER1_type 29 151 -58 2292 104 0 0 chrX 41451914 41452202 -121147728 + AluSx SINE Alu 1 288 -24 567 135 155 140 chrX 41452202 41452262 -121147668 + MER3 DNA MER1_type 151 209 0 753 122 0 0 chrX 41452283 41452381 -121147549 + AluJ/FLAM SINE Alu 5 102 -210 33 20 0 20 chrX 41452387 41452409 -121147521 + AT_rich Low_complexity Low_complexity 1 22 -28 1975 141 0 3 chrX 41452409 41452700 -121147230 - AluJb SINE Alu -22 290 1 33 20 0 20 chrX 41452700 41452728 -121147202 + AT_rich Low_complexity Low_complexity 22 50 0 1061 123 94 71 chrX 41454128 41454340 -121145590 - MER20 DNA MER1_type -1 218 2 553 219 34 27 chrX 41454573 41454719 -121145211 - MIR SINE MIR -26 236 90 356 321 107 0 chrX 41455773 41455913 -121144017 - L2 LINE L2 -1 3271 3117 264 137 0 0 chrX 41459105 41459156 -121140774 - L1ME3 LINE L1 -2 6160 6110 23 0 0 0 chrX 41460429 41460452 -121139478 + AT_rich Low_complexity Low_complexity 1 23 0 294 29 0 0 chrX 41460853 41460888 -121139042 + (TC)n Simple_repeat Simple_repeat 2 36 0 1761 138 14 14 chrX 41461544 41461826 -121138104 - AluJo SINE Alu -18 294 13 938 118 0 22 chrX 41462735 41462870 -121137060 + FLAM_C SINE Alu 1 132 -1 440 273 43 19 chrX 41462947 41463108 -121136822 - MIR SINE MIR -9 253 89 704 144 0 0 chrX 41463455 41463559 -121136371 + MLT1D LTR MaLR 13 116 -510 1712 172 117 25 chrX 41463618 41463985 -121135945 + MLT1D LTR MaLR 105 505 0 223 287 213 0 chrX 41464317 41464467 -121135463 + L3 LINE CR1 1257 1438 -139 274 88 27 11 chrX 41464497 41464551 -121135379 + L1ME1 LINE L1 2593 2687 -3891 624 105 0 0 chrX 41464553 41464639 -121135291 + AluSq SINE Alu 2 87 -226 1063 78 0 0 chrX 41464639 41464787 -121135143 + AluSp/q SINE Alu 156 303 0 2158 90 10 33 chrX 41464801 41465100 -121134830 + AluSx SINE Alu 1 292 -20 1563 217 132 57 chrX 41465102 41465377 -121134553 + L1ME1 LINE L1 3841 4094 -2446 2044 133 0 7 chrX 41465377 41465678 -121134252 + AluSx SINE Alu 1 299 -13 1563 217 132 57 chrX 41465678 41465828 -121134102 + L1ME1 LINE L1 4094 4231 -2309 2238 116 0 7 chrX 41465828 41466138 -121133792 + AluSx SINE Alu 1 308 -4 1563 217 132 57 chrX 41466138 41466251 -121133679 + L1ME1 LINE L1 4231 4420 -2120 966 132 0 0 chrX 41466251 41466387 -121133543 + AluJo SINE Alu 1 136 -176 1631 160 76 6 chrX 41466407 41466751 -121133179 - L1 LINE L1 -818 5328 4961 974 134 0 15 chrX 41466751 41466885 -121133045 - FLAM_C SINE Alu -1 132 1 283 267 0 0 chrX 41466886 41466961 -121132969 + L1ME1 LINE L1 5554 5628 -912 * 776 222 47 75 chrX 41466948 41467227 -121132703 + L1ME1 LINE L1 6241 6511 -49 1856 164 0 13 chrX 41467227 41467525 -121132405 + AluJo SINE Alu 1 294 -18 454 113 127 0 chrX 41468137 41468208 -121131722 - MADE1 DNA Mariner 0 80 1 2140 112 28 0 chrX 41468328 41468613 -121131317 + AluSx SINE Alu 1 293 -19 1277 93 0 0 chrX 41469041 41469202 -121130728 - AluJo SINE Alu -23 289 129 978 104 0 8 chrX 41469259 41469393 -121130537 - AluJo SINE Alu -179 133 1 2217 88 0 37 chrX 41469649 41469975 -121129955 + AluSx SINE Alu 1 315 0 897 303 7 22 chrX 41469984 41470255 -121129675 + MER89-int LTR ERV1 2401 2667 -1980 1175 111 0 17 chrX 41470256 41470428 -121129502 - AluSq SINE Alu -10 303 135 375 200 70 24 chrX 41470459 41470559 -121129371 + MER89-int LTR ERV1 4990 5951 -1586 1485 128 0 18 chrX 41470917 41471144 -121128786 + AluJb SINE Alu 86 308 -4 1839 157 0 17 chrX 41471323 41471616 -121128314 + AluJo SINE Alu 1 288 -24 7094 19 0 0 chrX 41471778 41472547 -121127383 + L1PA2 LINE L1 5387 6155 0 1706 158 113 97 chrX 41472566 41472749 -121127181 + MER90 LTR ERV1 3 182 -432 1392 159 120 22 chrX 41472749 41473025 -121126905 + AluJo SINE Alu 1 303 -9 2114 95 3 0 chrX 41473030 41473315 -121126615 + AluY SINE Alu 1 286 -25 956 130 6 0 chrX 41473315 41473476 -121126454 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 1706 158 113 97 chrX 41473476 41473697 -121126233 + MER90 LTR ERV1 185 466 -148 1537 159 46 14 chrX 41473697 41473980 -121125950 - AluSx SINE Alu -20 292 1 1706 158 113 97 chrX 41473980 41474096 -121125834 + MER90 LTR ERV1 466 579 -35 372 267 21 73 chrX 41525218 41525409 -121074521 + MER46C DNA MER2_type 156 336 -2 1058 289 55 45 chrX 41526092 41526688 -121073242 - L2 LINE L2 0 3313 2707 910 236 14 47 chrX 41531579 41531876 -121068054 - L1ME3A LINE L1 -3 6167 5881 466 198 169 53 chrX 41531882 41532125 -121067805 - L1MC5 LINE L1 -36 7925 7655 269 307 11 11 chrX 41532302 41532390 -121067540 + MER91B DNA MER1_type 88 175 -15 27 62 0 0 chrX 41533145 41533193 -121066737 + AT_rich Low_complexity Low_complexity 1 48 0 2153 118 17 0 chrX 41534696 41534983 -121064947 - AluSx SINE Alu -20 292 1 273 136 34 17 chrX 41535162 41535221 -121064709 - MLT1J1 LTR MaLR -316 130 71 239 235 132 0 chrX 41535608 41535676 -121064254 - L2 LINE L2 -38 3234 3158 847 114 250 6 chrX 41535787 41535963 -121063967 + MER20 DNA MER1_type 1 219 0 323 195 39 13 chrX 41535975 41536052 -121063878 - Charlie1 DNA MER1_type -4 2757 2679 412 182 147 77 chrX 41536073 41536216 -121063714 - Charlie1 DNA MER1_type -2602 159 7 296 311 194 17 chrX 41536217 41536397 -121063533 + MIR SINE MIR 4 215 -47 266 292 0 0 chrX 41536918 41536990 -121062940 + (CGG)n Simple_repeat Simple_repeat 2 73 0 1101 178 73 170 chrX 41538049 41538491 -121061439 + L1MC4 LINE L1 7513 7632 -176 1374 120 76 7 chrX 41538491 41538766 -121061164 + L1MA8 LINE L1 5998 6291 0 1101 178 73 170 chrX 41538766 41538928 -121061002 + L1MC4 LINE L1 7632 7808 0 674 183 59 35 chrX 41539182 41539351 -121060579 - L1MD3 LINE L1 -459 7536 7364 462 241 61 85 chrX 41539355 41539567 -121060363 + L2 LINE L2 2733 2939 -375 598 290 34 17 chrX 41539586 41539762 -121060168 - MER110-int LTR ERV1 -2318 2329 2151 914 101 20 0 chrX 41539908 41540056 -121059874 + L1MB5 LINE L1 6024 6174 0 265 270 54 9 chrX 41540622 41540733 -121059197 + L1M4 LINE L1 4317 4432 -1714 348 163 216 32 chrX 41540748 41540868 -121059062 - HsTC2 DNA Tc2 -1761 137 1 820 135 0 0 chrX 41541389 41541500 -121058430 + AluSg/x SINE Alu 176 286 -24 447 19 0 0 chrX 41541657 41541709 -121058221 + (TG)n Simple_repeat Simple_repeat 2 53 0 181 302 19 0 chrX 41541776 41541829 -121058101 - MIR SINE MIR 0 262 209 298 131 49 0 chrX 41541920 41541981 -121057949 + L1MB2 LINE L1 6101 6164 -7 2243 99 13 7 chrX 41542066 41542369 -121057561 - AluSx SINE Alu -7 305 1 216 0 0 0 chrX 41542369 41542393 -121057537 + (T)n Simple_repeat Simple_repeat 1 24 0 185 178 14 41 chrX 41545006 41545079 -121054851 + CT-rich Low_complexity Low_complexity 4 74 0 731 121 52 0 chrX 41546747 41546863 -121053067 + AluSg/x SINE Alu 173 294 -18 2569 45 0 0 chrX 41546863 41547177 -121052753 + AluY SINE Alu 1 311 0 296 342 9 18 chrX 41547523 41547634 -121052296 + L2 LINE L2 2266 2375 -939 212 214 0 0 chrX 41547659 41547701 -121052229 - L2 LINE L2 -49 3223 3182 1356 101 0 0 chrX 41547979 41548148 -121051782 - AluSg/x SINE Alu -11 301 133 2151 130 3 3 chrX 41549426 41549725 -121050205 - AluSx SINE Alu -13 299 1 743 322 74 44 chrX 41549730 41550205 -121049725 + L2 LINE L2 2824 3312 -1 2325 113 0 0 chrX 41550620 41550922 -121049008 + AluSx SINE Alu 1 302 -10 332 313 94 0 chrX 41552412 41552540 -121047390 - MIR SINE MIR -34 228 89 842 185 0 0 chrX 41552747 41552882 -121047048 + FRAM SINE Alu 19 153 -23 277 178 322 0 chrX 41553358 41553448 -121046482 - MLT1K LTR MaLR -34 554 436 235 271 43 0 chrX 41553453 41553523 -121046407 - MIR SINE MIR -81 181 109 2438 85 0 0 chrX 41553545 41553838 -121046092 + AluSx SINE Alu 1 293 -19 418 258 90 70 chrX 41554044 41554152 -121045778 - L1M4 LINE L1 -6292 250 146 2489 63 3 0 chrX 41554152 41554455 -121045475 - AluY SINE Alu -7 304 1 418 258 90 70 chrX 41554455 41554475 -121045455 - L1M4 LINE L1 -6396 146 128 1814 117 137 48 chrX 41554475 41554868 -121045062 - MSTA LTR MaLR 0 428 1 418 258 90 70 chrX 41554868 41554982 -121044948 - L1M4 LINE L1 -6414 128 2 2177 106 0 46 chrX 41554984 41555150 -121044780 - AluY SINE Alu -22 289 142 2632 71 0 0 chrX 41555150 41555458 -121044472 - AluSg SINE Alu -2 308 1 2177 106 0 46 chrX 41555458 41555594 -121044336 - AluY SINE Alu -169 142 1 664 164 0 57 chrX 41555661 41555801 -121044129 - FLAM_C SINE Alu 0 143 12 5215 29 0 0 chrX 41555890 41556515 -121043415 - L1PA3 LINE L1 -5 6150 5526 1900 168 0 10 chrX 41556519 41556822 -121043108 - AluJo SINE Alu -12 300 1 926 189 61 9 chrX 41556822 41557050 -121042880 - L1MEc LINE L1 -4303 2093 1854 974 168 0 0 chrX 41557050 41557199 -121042731 - FRAM SINE Alu -2 174 26 2460 93 7 0 chrX 41557224 41557534 -121042396 + AluSx SINE Alu 1 312 0 1003 285 45 33 chrX 41557595 41557675 -121042255 - L1MEc LINE L1 -4759 1637 1559 2289 113 0 7 chrX 41557675 41557977 -121041953 - AluSx SINE Alu -12 300 1 1003 285 45 33 chrX 41557977 41558471 -121041459 - L1MEc LINE L1 -4837 1559 1056 2415 236 81 60 chrX 41558527 41559320 -121040610 - MER21B LTR ERV1 -54 809 1 928 159 41 9 chrX 41559332 41559552 -121040378 - L1MEc LINE L1 -5455 941 715 2738 94 7 2 chrX 41559575 41559978 -121039952 - L1M2 LINE L1 -572 5728 5324 2282 109 13 0 chrX 41559978 41560281 -121039649 - AluSx SINE Alu -5 307 1 460 93 0 0 chrX 41560378 41560453 -121039477 - L1M2 LINE L1 -1465 4681 4607 2413 101 0 0 chrX 41560462 41560769 -121039161 - AluSx SINE Alu -5 307 1 1908 167 0 13 chrX 41560773 41561072 -121038858 - AluJo SINE Alu -17 295 1 505 90 0 0 chrX 41561073 41561140 -121038790 + MER50 LTR ERV1 645 711 -23 527 219 130 0 chrX 41561141 41561287 -121038643 - L1MEc LINE L1 -6195 201 37 2306 105 0 13 chrX 41561656 41561962 -121037968 + AluSx SINE Alu 1 302 -10 2290 100 7 0 chrX 41561962 41562253 -121037677 + AluSg SINE Alu 1 293 -17 1996 162 0 0 chrX 41562960 41563349 -121036581 - AluJb SINE Alu 0 400 12 2358 103 0 0 chrX 41563387 41563689 -121036241 + AluSg SINE Alu 1 302 -8 1931 114 139 0 chrX 41563753 41564026 -121035904 + AluSq SINE Alu 1 311 -2 1764 155 24 7 chrX 41564317 41564613 -121035317 + AluJb SINE Alu 1 301 -11 2423 75 3 0 chrX 41564613 41564906 -121035024 - AluY SINE Alu -17 294 1 2412 79 7 10 chrX 41564924 41565229 -121034701 + AluSg SINE Alu 1 304 -6 2638 116 131 17 chrX 41565304 41565777 -121034153 - MER1A DNA MER1_type 0 527 1 2238 98 3 7 chrX 41566357 41566654 -121033276 + AluY SINE Alu 1 296 -15 1398 174 77 12 chrX 41566889 41567187 -121032743 - AluJb SINE Alu 0 320 6 2077 108 10 34 chrX 41567200 41567497 -121032433 - AluSq SINE Alu -18 295 6 2319 110 0 0 chrX 41567539 41567840 -121032090 - AluSq SINE Alu -9 304 4 1773 191 3 0 chrX 41568970 41569269 -121030661 - AluJo SINE Alu -12 300 1 2113 125 0 49 chrX 41569294 41569485 -121030445 - AluSx SINE Alu -1 311 141 2393 102 3 10 chrX 41569485 41569798 -121030132 - AluSx SINE Alu -1 311 1 2113 125 0 49 chrX 41569798 41569933 -121029997 - AluSx SINE Alu -171 141 1 1559 199 0 11 chrX 41570175 41570447 -121029483 + AluJo SINE Alu 1 269 -43 1379 92 31 0 chrX 41570894 41571090 -121028840 - MER30 DNA MER1_type -25 205 4 352 159 0 0 chrX 41572221 41572290 -121027640 - FLAM_A SINE Alu -19 114 58 585 229 0 0 chrX 41572290 41572399 -121027531 + AluJb SINE Alu 175 314 0 280 0 0 0 chrX 41572399 41572430 -121027500 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 837 140 0 70 chrX 41572432 41572575 -121027355 - AluJo SINE Alu -161 151 19 2009 133 3 7 chrX 41572616 41572910 -121027020 + AluSq SINE Alu 21 313 0 309 251 95 75 chrX 41572917 41573015 -121026915 + L1MC4 LINE L1 7501 7595 -428 2465 95 0 0 chrX 41573015 41573321 -121026609 + AluSg SINE Alu 1 306 -4 309 251 95 75 chrX 41573321 41573417 -121026513 + L1MC4 LINE L1 7595 7754 -269 2199 141 0 3 chrX 41573464 41573777 -121026153 + AluSx SINE Alu 1 312 0 2232 131 3 13 chrX 41573791 41574105 -121025825 + AluSx SINE Alu 1 311 -1 1572 126 18 35 chrX 41574379 41574712 -121025218 + MER4A LTR ERV1 262 647 -17 295 281 240 7 chrX 41574762 41574908 -121025022 - MIR SINE MIR -8 254 75 279 0 0 0 chrX 41574941 41574972 -121024958 + (TA)n Simple_repeat Simple_repeat 2 32 0 1153 68 0 0 chrX 41574972 41575119 -121024811 - L1PA5 LINE L1 -9 6145 5999 2371 70 3 3 chrX 41575129 41575434 -121024496 - AluSp SINE Alu 0 305 1 297 0 0 0 chrX 41575434 41575467 -121024463 + (T)n Simple_repeat Simple_repeat 1 33 0 1203 127 5 14 chrX 41575553 41575765 -121024165 - MER6 DNA MER2_type 0 865 656 546 88 0 0 chrX 41575766 41575834 -121024096 + AluS SINE Alu 2 69 -244 1910 109 0 33 chrX 41575834 41576110 -121023820 - AluSx SINE Alu -38 274 8 2458 84 3 0 chrX 41577711 41578022 -121021908 + AluSp SINE Alu 1 312 -1 24 67 0 0 chrX 41578073 41578118 -121021812 + AT_rich Low_complexity Low_complexity 1 45 0 1892 126 0 0 chrX 41578152 41578406 -121021524 + AluSx SINE Alu 1 254 -58 259 299 180 9 chrX 41578545 41578756 -121021174 - L2 LINE L2 -257 3056 2810 2086 151 3 3 chrX 41578986 41579290 -121020640 - AluJo SINE Alu -8 304 1 257 0 0 29 chrX 41579313 41579347 -121020583 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2360 69 0 0 chrX 41579349 41579624 -121020306 - AluY SINE Alu -36 275 1 2411 87 0 3 chrX 41579626 41579924 -121020006 - AluSx SINE Alu -15 297 1 482 266 32 0 chrX 41579948 41580072 -121019858 - MIR SINE MIR -101 161 34 2324 100 0 16 chrX 41580235 41580567 -121019363 - AluSg SINE Alu 0 310 2 2053 141 6 10 chrX 41580597 41580910 -121019020 - AluSx SINE Alu 0 312 1 258 325 48 48 chrX 41580910 41581076 -121018854 - L2 LINE L2 -565 2749 2584 1430 168 116 11 chrX 41581241 41581509 -121018421 + AluJb SINE Alu 1 296 -16 22 0 0 0 chrX 41581511 41581533 -121018397 + AT_rich Low_complexity Low_complexity 1 22 0 2154 122 7 0 chrX 41581542 41581836 -121018094 + AluSx SINE Alu 1 296 -16 248 330 52 0 chrX 41581909 41582024 -121017906 - L2 LINE L2 -916 2398 2278 229 163 349 12 chrX 41582115 41582201 -121017729 + MER103 DNA DNA 4 118 -48 714 175 0 17 chrX 41582242 41582362 -121017568 - FLAM_C SINE Alu -15 118 1 276 269 17 59 chrX 41582893 41583012 -121016918 - L1ME3A LINE L1 -69 6101 5988 2023 120 32 26 chrX 41583036 41583345 -121016585 - AluSx SINE Alu 0 312 2 2295 95 0 0 chrX 41583611 41583931 -121015999 + AluSx SINE Alu 1 320 0 441 290 68 17 chrX 41583974 41584150 -121015780 + REP3 LTR ERV 1 185 -377 1499 153 27 5 chrX 41584152 41584375 -121015555 - AluJb SINE Alu -19 293 66 2364 106 0 0 chrX 41584375 41584675 -121015255 + AluSx SINE Alu 1 301 -11 577 118 0 0 chrX 41584675 41584751 -121015179 - AluJb SINE Alu -235 77 2 228 206 0 96 chrX 41584753 41584826 -121015104 + REP3 LTR ERV 224 289 -273 2326 107 0 3 chrX 41584847 41585146 -121014784 - AluSx SINE Alu -14 298 1 1815 178 3 13 chrX 41585309 41585618 -121014312 + AluJb SINE Alu 1 306 -6 945 248 21 63 chrX 41585908 41586033 -121013897 + HERVL40 LTR ERVL 2050 2179 -3351 2119 138 0 7 chrX 41586033 41586331 -121013599 + AluSx SINE Alu 1 296 -16 945 248 21 63 chrX 41586331 41586491 -121013439 + HERVL40 LTR ERVL 2179 2323 -3207 402 294 175 6 chrX 41586513 41586690 -121013240 + HERVL40 LTR ERVL 3510 3716 -1814 4242 140 36 4 chrX 41586690 41587374 -121012556 + MER50 LTR ERV1 1 706 -28 2294 107 0 10 chrX 41587466 41587774 -121012156 + AluSx SINE Alu 3 307 -5 1966 156 14 0 chrX 41587809 41588104 -121011826 - AluJb SINE Alu -13 299 1 1478 134 14 0 chrX 41588608 41588831 -121011099 + AluJb SINE Alu 86 311 -1 4156 214 36 79 chrX 41588940 41589117 -121010813 + L1MDb LINE L1 640 823 -5583 1888 170 0 0 chrX 41589117 41589399 -121010531 + AluJo SINE Alu 1 282 -30 4156 214 36 79 chrX 41589399 41589604 -121010326 + L1MDb LINE L1 823 1035 -5371 2032 135 0 52 chrX 41589604 41589931 -121009999 + AluJb SINE Alu 1 310 -2 2321 112 0 13 chrX 41589941 41590255 -121009675 + AluSx SINE Alu 1 310 -2 4156 214 36 79 chrX 41590255 41590385 -121009545 + L1MDb LINE L1 1044 1178 -5228 1967 155 0 0 chrX 41590385 41590663 -121009267 + AluJb SINE Alu 2 279 -33 198 118 0 0 chrX 41590667 41590701 -121009229 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4156 214 36 79 chrX 41590701 41590790 -121009140 + L1MDb LINE L1 1181 1272 -5134 2240 106 14 0 chrX 41590790 41591083 -121008847 + AluSg SINE Alu 4 300 -10 2052 95 4 0 chrX 41591086 41591348 -121008582 + AluSp SINE Alu 6 268 -45 4156 214 36 79 chrX 41591348 41591621 -121008309 + L1MDb LINE L1 1274 1557 -4849 2192 124 0 10 chrX 41591621 41591927 -121008003 - AluSx SINE Alu -9 303 1 4156 214 36 79 chrX 41591927 41592285 -121007645 + L1MDb LINE L1 1557 1929 -4477 1702 202 21 39 chrX 41592285 41592666 -121007264 - MLT1A2 LTR MaLR 0 374 1 4156 214 36 79 chrX 41592666 41593081 -121006849 + L1MDb LINE L1 1929 2226 -4180 1377 183 12 120 chrX 41593081 41593490 -121006440 - MLT1A1 LTR MaLR 0 365 1 4156 214 36 79 chrX 41593490 41593644 -121006286 + L1MDb LINE L1 2226 2385 -4021 442 103 0 0 chrX 41593629 41593697 -121006233 + L1M2 LINE L1 5419 5486 -805 * 643 218 0 0 chrX 41593697 41593807 -121006123 + FLAM_A SINE Alu 1 110 -32 2464 88 3 0 chrX 41593813 41594119 -121005811 - AluSg SINE Alu -1 309 3 4433 147 47 2 chrX 41594132 41594919 -121005011 + L1MA7 LINE L1 5470 6291 0 1795 123 105 0 chrX 41594975 41595251 -121004679 - AluSx SINE Alu -7 305 1 362 94 0 0 chrX 41595251 41595304 -121004626 + MER4C LTR ERV1 404 456 -9 2247 115 3 0 chrX 41595304 41595608 -121004322 + AluSx SINE Alu 1 305 -7 468 65 0 0 chrX 41595645 41595707 -121004223 + MER4C LTR ERV1 404 465 0 514 185 65 130 chrX 41595707 41595779 -121004151 - L1MDa LINE L1 -6194 346 271 757 180 0 8 chrX 41595779 41595907 -121004023 - FLAM_A SINE Alu -4 129 3 514 185 65 130 chrX 41595907 41596050 -121003880 - L1MDa LINE L1 -6269 271 145 884 94 0 0 chrX 41596051 41596168 -121003762 + AluSg/x SINE Alu 184 300 -10 2321 81 112 13 chrX 41596168 41596551 -121003379 - MER4C LTR ERV1 -44 421 1 2324 98 10 0 chrX 41596588 41596884 -121003046 + AluSx SINE Alu 1 299 -13 1295 166 89 46 chrX 41596967 41597196 -121002734 + LTR49 LTR ERV1 1 250 -345 2128 113 28 0 chrX 41597196 41597512 -121002418 + AluSx SINE Alu 1 324 0 1295 166 89 46 chrX 41597512 41597606 -121002324 + LTR49 LTR ERV1 250 339 -256 680 186 10 7 chrX 41597581 41597779 -121002151 + LTR29 LTR ERV1 387 622 0 * 343 158 13 13 chrX 41597958 41598034 -121001896 + CT-rich Low_complexity Low_complexity 4 79 0 1921 135 64 10 chrX 41598034 41598331 -121001599 - AluSq SINE Alu 0 313 1 2426 77 0 7 chrX 41598331 41598629 -121001301 - AluSc SINE Alu -12 297 1 1648 135 19 98 chrX 41598635 41598960 -121000970 - AluJo SINE Alu -11 301 3 2312 125 3 3 chrX 41599009 41599321 -121000609 + AluSx SINE Alu 1 312 0 2215 113 0 0 chrX 41599418 41599736 -121000194 - AluSq SINE Alu 0 318 1 246 212 12 118 chrX 41599762 41599805 -121000125 + MER58A DNA MER1_type 2 33 -308 1831 86 8 4 chrX 41599805 41600048 -120999882 - AluSq SINE Alu -2 311 68 246 212 12 118 chrX 41600048 41600089 -120999841 + MER58A DNA MER1_type 33 77 -147 548 223 68 59 chrX 41600091 41600233 -120999697 + L1MD2 LINE L1 4316 4462 -1684 2551 64 0 3 chrX 41600233 41600531 -120999399 + AluSx SINE Alu 1 297 -15 548 223 68 59 chrX 41600531 41600608 -120999322 + L1MD2 LINE L1 4462 4537 -1609 1938 150 3 14 chrX 41600627 41600920 -120999010 + AluJb SINE Alu 5 294 -18 457 266 65 47 chrX 41600920 41601089 -120998841 + MER41C LTR ERV1 43 214 -340 1924 159 0 25 chrX 41601195 41601515 -120998415 - AluJb SINE Alu 0 312 1 606 251 23 0 chrX 41601516 41601687 -120998243 + L1MD2 LINE L1 5055 5229 -917 * 2409 201 119 42 chrX 41601677 41602218 -120997712 + L1MD2 LINE L1 5571 6183 -176 207 0 0 0 chrX 41602218 41602241 -120997689 + (CA)n Simple_repeat Simple_repeat 2 24 0 2409 201 119 42 chrX 41602241 41602422 -120997508 + L1MD2 LINE L1 6183 6349 -10 1930 139 0 60 chrX 41602432 41602564 -120997366 + AluJb SINE Alu 9 147 -165 2565 77 0 0 chrX 41602564 41602875 -120997055 + AluY SINE Alu 1 311 0 1930 139 0 60 chrX 41602875 41603059 -120996871 + AluJb SINE Alu 147 306 -6 1770 184 57 28 chrX 41603524 41603877 -120996053 - MLT1A1 LTR MaLR 0 365 3 2340 119 0 0 chrX 41603939 41604249 -120995681 - AluSx SINE Alu -2 310 1 876 141 0 0 chrX 41604332 41604460 -120995470 + AluJ SINE Alu 1 128 -174 1704 139 28 3 chrX 41604460 41604739 -120995191 + L1PA13 LINE L1 5872 6160 -3 472 200 111 0 chrX 41604743 41604833 -120995097 + AluJ SINE Alu 121 220 -92 3877 102 60 6 chrX 41604833 41605383 -120994547 + LTR19B LTR ERV1 1 580 0 54080 91 18 9 chrX 41605383 41605696 -120994234 + HERVFH19I LTR ERV1 1 310 -7409 204 40 0 0 chrX 41605696 41605721 -120994209 + (TC)n Simple_repeat Simple_repeat 2 26 0 54080 91 18 9 chrX 41605721 41613058 -120986872 + HERVFH19I LTR ERV1 310 7716 -3 3841 111 54 13 chrX 41613061 41613618 -120986312 + LTR19B LTR ERV1 1 580 0 599 71 36 0 chrX 41613618 41613702 -120986228 + AluJ SINE Alu 216 302 -10 1972 112 0 68 chrX 41613704 41613837 -120986093 + AluSx SINE Alu 3 144 -168 2459 84 0 3 chrX 41613837 41614136 -120985794 + AluSq SINE Alu 1 298 -15 1972 112 0 68 chrX 41614136 41614323 -120985607 + AluSx SINE Alu 144 301 -11 1193 107 0 0 chrX 41614722 41614881 -120985049 - AluSg/x SINE Alu -15 297 139 2253 102 0 16 chrX 41614885 41614901 -120985029 - AluSq SINE Alu -14 299 284 378 0 0 0 chrX 41614901 41614943 -120984987 + (TG)n Simple_repeat Simple_repeat 2 43 0 2253 102 0 16 chrX 41614943 41615230 -120984700 - AluSq SINE Alu -29 284 1 746 211 240 66 chrX 41615291 41615732 -120984198 + REP3 LTR ERV 1 518 -44 209 333 9 27 chrX 41616150 41616261 -120983669 - MIR SINE MIR -71 191 83 1807 147 0 35 chrX 41616420 41616705 -120983225 + AluJb SINE Alu 21 295 -17 426 181 52 0 chrX 41616714 41616830 -120983100 + GA-rich Low_complexity Low_complexity 5 126 0 1012 129 14 0 chrX 41616923 41617101 -120982829 + AluSg/x SINE Alu 143 312 0 209 30 61 0 chrX 41617756 41617789 -120982141 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1110 115 11 71 chrX 41617909 41618055 -120981875 + FRAM SINE Alu 1 135 -177 1564 182 55 4 chrX 41618055 41618330 -120981600 - AluJo SINE Alu -23 289 1 1110 115 11 71 chrX 41618330 41618365 -120981565 + FRAM SINE Alu 135 171 -5 2236 110 3 0 chrX 41618479 41618769 -120981161 + AluSx SINE Alu 1 291 -21 2322 80 0 7 chrX 41618771 41619057 -120980873 + AluSc SINE Alu 1 284 -25 229 0 83 0 chrX 41619060 41619096 -120980834 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 346 213 43 0 chrX 41619098 41619192 -120980738 - MER113 DNA MER1_type? -412 109 12 25 65 0 0 chrX 41619243 41619289 -120980641 + AT_rich Low_complexity Low_complexity 1 46 0 1861 168 0 26 chrX 41619340 41619672 -120980258 - AluSx SINE Alu 0 312 1 481 250 0 0 chrX 41619729 41619833 -120980097 - U13 snRNA snRNA 0 104 1 2208 88 10 14 chrX 41620193 41620553 -120979377 - AluSp SINE Alu 0 313 1 1984 124 28 0 chrX 41620713 41620995 -120978935 + AluJb SINE Alu 1 290 -22 2128 114 0 27 chrX 41621010 41621307 -120978623 + AluSx SINE Alu 8 296 -16 451 129 54 32 chrX 41621372 41621465 -120978465 - AluSg/x SINE Alu -6 306 212 2300 99 0 7 chrX 41621551 41621855 -120978075 - AluSx SINE Alu -10 302 1 2319 112 0 0 chrX 41622373 41622678 -120977252 + AluSg SINE Alu 1 305 -5 792 139 47 16 chrX 41622689 41622818 -120977112 + AluJo/FLAM SINE Alu 1 133 -169 2195 91 21 0 chrX 41622821 41623106 -120976824 + AluSx SINE Alu 1 291 -21 192 77 0 0 chrX 41623107 41623133 -120976797 + (CGAGG)n Simple_repeat Simple_repeat 2 27 0 316 153 0 22 chrX 41623149 41623213 -120976717 + FLAM_A SINE Alu 18 63 -70 1472 214 76 24 chrX 41623222 41623605 -120976325 + L1MD1 LINE L1 5681 6083 -159 1035 194 52 9 chrX 41623615 41623847 -120976083 + L1MD2 LINE L1 6108 6349 -10 2309 93 3 0 chrX 41623857 41624168 -120975762 + AluSp SINE Alu 1 312 -1 891 192 66 20 chrX 41624174 41624499 -120975431 + L1MC4 LINE L1 6993 7486 -556 1112 113 0 0 chrX 41624728 41624878 -120975052 + AluSq/x SINE Alu 1 150 -163 1723 75 9 0 chrX 41624879 41625106 -120974824 + AluSp SINE Alu 73 301 -12 266 244 158 0 chrX 41626733 41626815 -120973115 + L2 LINE L2 3171 3265 -7 605 154 9 0 chrX 41626838 41626948 -120972982 + L1MC4 LINE L1 7471 7581 -461 1962 102 37 3 chrX 41626955 41627249 -120972681 - AluSx SINE Alu -6 306 3 1831 166 0 0 chrX 41627258 41627565 -120972365 - AluJo SINE Alu -5 307 1 574 273 220 11 chrX 41627567 41627670 -120972260 + L1MC4 LINE L1 7694 7774 -268 2091 115 0 3 chrX 41627670 41627974 -120971956 - AluSx SINE Alu -9 303 1 574 273 220 11 chrX 41627974 41628156 -120971774 + L1MC4 LINE L1 7774 8039 -3 1877 110 51 3 chrX 41628192 41628484 -120971446 - AluSg SINE Alu -4 306 1 2340 60 0 17 chrX 41628503 41628803 -120971127 + AluY SINE Alu 1 295 -16 229 300 0 0 chrX 41628809 41628869 -120971061 - L1MC5 LINE L1 -70 7891 7832 458 215 8 77 chrX 41628913 41629010 -120970920 - MIR SINE MIR -140 122 35 2426 55 0 16 chrX 41629010 41629318 -120970612 - AluY SINE Alu -8 303 1 458 215 8 77 chrX 41629318 41629350 -120970580 - MIR SINE MIR -227 35 2 2184 102 3 3 chrX 41629463 41629776 -120970154 - AluSq SINE Alu 0 313 1 671 254 75 32 chrX 41629779 41630058 -120969872 - L1MC4 LINE L1 -152 7890 7600 646 171 0 54 chrX 41630096 41630225 -120969705 + FLAM_C SINE Alu 19 140 -3 1066 200 0 14 chrX 41630234 41630444 -120969486 - AluJb SINE Alu -15 297 91 745 143 0 0 chrX 41630508 41630620 -120969310 + FLAM_C SINE Alu 4 115 -18 1082 129 134 0 chrX 41631761 41631844 -120968086 + MER30 DNA MER1_type 20 90 -140 188 35 35 0 chrX 41631844 41631873 -120968057 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1082 129 134 0 chrX 41631873 41631975 -120967955 + MER30 DNA MER1_type 90 230 0 2009 87 7 24 chrX 41632454 41632752 -120967178 - AluSc SINE Alu -16 293 1 1646 184 0 10 chrX 41632752 41633057 -120966873 - AluJo SINE Alu -10 302 1 1011 180 184 16 chrX 41633298 41633416 -120966514 + AluJb SINE Alu 1 98 -204 255 61 0 0 chrX 41633416 41633449 -120966481 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1011 180 184 16 chrX 41633449 41633575 -120966355 + AluJb SINE Alu 98 286 -16 306 139 23 151 chrX 41633597 41633683 -120966247 + Alu SINE Alu 245 302 0 1398 159 35 35 chrX 41633724 41634007 -120965923 - AluJb SINE Alu -12 300 18 776 108 62 31 chrX 41634016 41634145 -120965785 - FLAM_C SINE Alu 0 133 1 29 28 0 0 chrX 41634154 41634190 -120965740 + AT_rich Low_complexity Low_complexity 1 36 0 2341 262 24 11 chrX 41634195 41634598 -120965332 + L1MD2 LINE L1 4439 4856 -1290 1961 141 3 6 chrX 41634598 41634910 -120965020 - AluSx SINE Alu -1 311 1 2341 262 24 11 chrX 41634910 41635227 -120964703 + L1MD2 LINE L1 4856 5168 -978 712 187 22 14 chrX 41635227 41635366 -120964564 + FLAM_C SINE Alu 2 141 -2 498 206 42 0 chrX 41635409 41635578 -120964352 + L1MD2 LINE L1 5221 5395 -751 1019 178 0 43 chrX 41635583 41635791 -120964139 + AluJo SINE Alu 1 199 -113 1373 200 73 22 chrX 41635800 41636411 -120963519 + L1MD2 LINE L1 5681 6330 -29 1888 137 0 0 chrX 41636420 41636731 -120963199 - AluSx SINE Alu 0 311 1 1685 179 0 0 chrX 41636736 41637032 -120962898 - AluJo SINE Alu -16 296 1 805 214 39 28 chrX 41637034 41637216 -120962714 + L1MC4 LINE L1 7694 7877 -165 2056 101 0 32 chrX 41637217 41637525 -120962405 - AluSg SINE Alu -12 298 1 237 224 0 0 chrX 41637602 41637651 -120962279 + L1MC4 LINE L1 7991 8039 -3 2244 104 0 0 chrX 41637689 41637988 -120961942 - AluSq SINE Alu -14 299 1 1934 146 0 0 chrX 41637998 41638307 -120961623 - AluJb SINE Alu -2 310 2 1463 168 3 70 chrX 41638337 41638665 -120961265 + AluJo SINE Alu 1 306 -6 333 288 196 29 chrX 41638676 41638795 -120961135 + L1M4 LINE L1 2965 3063 -3083 2190 91 0 3 chrX 41638795 41639092 -120960838 + AluSx SINE Alu 5 300 -12 333 288 196 29 chrX 41639092 41639212 -120960718 + L1M4 LINE L1 3063 3244 -2902 420 104 134 0 chrX 41639255 41639322 -120960608 + AluS SINE Alu 2 77 -236 2074 105 0 20 chrX 41639386 41639691 -120960239 - AluSg SINE Alu -11 299 1 926 178 6 0 chrX 41639694 41639868 -120960062 - AluJb SINE Alu -8 304 130 1814 129 13 42 chrX 41639885 41640195 -120959735 + AluSx SINE Alu 1 301 -11 2211 93 0 16 chrX 41640195 41640505 -120959425 + AluSq SINE Alu 1 305 -8 811 137 0 23 chrX 41640522 41640653 -120959277 + AluSg/x SINE Alu 180 307 -3 202 137 0 78 chrX 41641136 41641187 -120958743 + (GGGTG)n Simple_repeat Simple_repeat 5 51 0 1915 91 0 30 chrX 41641438 41641561 -120958369 - AluSx SINE Alu -55 257 132 180 0 0 0 chrX 41641561 41641581 -120958349 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2147 82 0 4 chrX 41641584 41641864 -120958066 - AluSg SINE Alu -31 279 1 1915 91 0 30 chrX 41641864 41642001 -120957929 - AluSx SINE Alu -182 130 1 1311 184 90 4 chrX 41642002 41642268 -120957662 - AluJb SINE Alu -15 297 9 292 43 21 21 chrX 41642331 41642378 -120957552 + (TG)n Simple_repeat Simple_repeat 2 48 0 1544 127 8 8 chrX 41642734 41642979 -120956951 - AluJb SINE Alu -67 245 1 2173 170 33 2 chrX 41642979 41643409 -120956521 - L1MC/D LINE L1 -692 5927 5485 5010 224 45 99 chrX 41643563 41643736 -120956194 - L1MC/D LINE L1 -895 5511 5330 2347 67 0 3 chrX 41643736 41644036 -120955894 + AluSc SINE Alu 1 299 -10 5010 224 45 99 chrX 41644036 41644050 -120955880 - L1MC/D LINE L1 -1076 5330 5317 2201 96 0 0 chrX 41644050 41644342 -120955588 + AluSq SINE Alu 2 293 -20 5010 224 45 99 chrX 41644342 41644839 -120955091 - L1MC/D LINE L1 -1089 5317 4795 1661 159 14 10 chrX 41644839 41645129 -120954801 - AluJb SINE Alu -21 291 1 5010 224 45 99 chrX 41645129 41645378 -120954552 - L1MC/D LINE L1 -1611 4795 4534 1327 209 61 0 chrX 41645378 41645655 -120954275 - AluJo SINE Alu -18 294 1 5010 224 45 99 chrX 41645655 41645892 -120954038 - L1MC/D LINE L1 -1872 4534 4286 1914 129 11 3 chrX 41645892 41646178 -120953752 + AluJb SINE Alu 1 288 -24 5010 224 45 99 chrX 41646178 41646381 -120953549 - L1MC/D LINE L1 -2120 4286 4074 2284 99 0 0 chrX 41646381 41646683 -120953247 - AluSx SINE Alu -10 302 1 5010 224 45 99 chrX 41646683 41646975 -120952955 - L1MC/D LINE L1 -2332 4074 3768 2105 96 0 3 chrX 41646975 41647370 -120952560 - AluSx SINE Alu 0 394 1 5010 224 45 99 chrX 41647370 41647395 -120952535 - L1MC/D LINE L1 -2638 3768 3743 2193 108 0 0 chrX 41647395 41647691 -120952239 + AluSg SINE Alu 1 296 -14 5010 224 45 99 chrX 41647691 41648142 -120951788 - L1MC/D LINE L1 -2663 3743 3478 2194 89 0 0 chrX 41648144 41648425 -120951505 - AluSx SINE Alu -17 295 15 1820 131 11 3 chrX 41648455 41648738 -120951192 - AluJb SINE Alu -13 299 15 1083 222 15 18 chrX 41648749 41649078 -120950852 - L1MC/D LINE L1 -3525 2881 2554 1923 153 0 3 chrX 41649080 41649388 -120950542 - AluJo SINE Alu -5 307 1 969 191 25 50 chrX 41649393 41649676 -120950254 - L1MC/D LINE L1 -3961 2445 2170 2100 94 3 7 chrX 41649678 41649975 -120949955 - AluSq SINE Alu -17 296 1 1712 188 41 6 chrX 41650037 41650357 -120949573 + MER74A LTR ERVL 3 333 -225 2069 116 0 3 chrX 41650392 41650684 -120949246 - AluSg SINE Alu -19 291 1 2004 133 10 7 chrX 41650684 41650992 -120948938 - AluSx SINE Alu -3 309 1 1451 99 5 5 chrX 41651007 41651218 -120948712 - AluSq SINE Alu -14 299 89 213 64 0 64 chrX 41651220 41651267 -120948663 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 772 153 17 17 chrX 41651271 41651448 -120948482 + CT-rich Low_complexity Low_complexity 1 177 0 1685 151 13 32 chrX 41651448 41651759 -120948171 - AluJb SINE Alu -7 305 1 411 145 0 0 chrX 41651759 41651821 -120948109 + MER74A LTR ERVL 476 537 -21 1569 218 24 18 chrX 41651829 41652164 -120947766 - MLT1A1 LTR MaLR 0 365 29 1749 187 86 137 chrX 41652179 41652193 -120947737 - L1MC/D LINE L1 -4202 2204 2191 2233 113 0 0 chrX 41652193 41652504 -120947426 - AluSx SINE Alu -1 311 1 1749 187 86 137 chrX 41652504 41652779 -120947151 - L1MC/D LINE L1 -4215 2191 1903 1834 173 0 3 chrX 41652779 41653092 -120946838 - AluJo SINE Alu 0 312 1 1749 187 86 137 chrX 41653092 41653475 -120946455 - L1MC/D LINE L1 -4503 1903 1582 2166 113 3 0 chrX 41653475 41653786 -120946144 - AluSq SINE Alu 0 313 2 1749 187 86 137 chrX 41653786 41653973 -120945957 - L1MC/D LINE L1 -4824 1582 1387 1720 147 51 56 chrX 41653979 41654354 -120945576 + THE1C LTR MaLR 1 373 -2 1839 103 0 55 chrX 41654355 41654647 -120945283 + AluSx SINE Alu 1 276 -36 308 43 22 0 chrX 41654650 41654696 -120945234 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1295 111 5 0 chrX 41654696 41654885 -120945045 + AluSp SINE Alu 124 313 0 893 160 11 23 chrX 41654896 41655071 -120944859 - L1MC/D LINE L1 -5017 1392 1220 2129 121 0 0 chrX 41655072 41655369 -120944561 - AluSq SINE Alu -16 297 1 600 179 98 0 chrX 41655396 41655519 -120944411 - AluJb SINE Alu -176 136 2 898 107 25 61 chrX 41655523 41655720 -120944210 - L1MC/D LINE L1 -5189 1220 1031 686 93 0 0 chrX 41655743 41655829 -120944101 - U6 snRNA snRNA -21 86 1 552 193 0 0 chrX 41655829 41655938 -120943992 - L1MC/D LINE L1 -5366 1043 935 2255 83 63 109 chrX 41655952 41655979 -120943951 - L1MA8 LINE L1 -5 6286 6259 201 39 0 0 chrX 41655979 41656005 -120943925 + (TA)n Simple_repeat Simple_repeat 1 26 0 2255 83 63 109 chrX 41656005 41656151 -120943779 - L1MA8 LINE L1 -32 6259 6108 1957 133 0 0 chrX 41656151 41656445 -120943485 - AluJb SINE Alu -18 294 1 2255 83 63 109 chrX 41656445 41656477 -120943453 - L1MA8 LINE L1 -183 6108 6076 1616 148 35 11 chrX 41656477 41656761 -120943169 + AluJo SINE Alu 8 298 -14 2255 83 63 109 chrX 41656761 41657010 -120942920 - L1MA8 LINE L1 -215 6076 5851 401 86 0 111 chrX 41657016 41657077 -120942853 - L1MA8 LINE L1 -640 5660 5608 1779 152 0 13 chrX 41657077 41657379 -120942551 - AluJo SINE Alu -14 298 1 401 86 0 111 chrX 41657379 41657398 -120942532 - L1MA8 LINE L1 -692 5608 5589 * 1448 176 40 4 chrX 41657389 41657662 -120942268 - L1MC/D LINE L1 -5451 958 676 482 0 0 17 chrX 41657703 41657762 -120942168 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 991 59 5 65 chrX 41657784 41657970 -120941960 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1668 159 4 0 chrX 41657970 41658247 -120941683 - AluJo SINE Alu -34 278 1 552 282 29 6 chrX 41658274 41658444 -120941486 - L1MC/D LINE L1 -5816 593 420 * 1989 260 12 76 chrX 41658440 41658954 -120940976 - L1MC/D LINE L1 -5790 619 155 2267 96 3 0 chrX 41658954 41659256 -120940674 - AluSp SINE Alu -10 303 1 1989 260 12 76 chrX 41659256 41659398 -120940532 - L1MC/D LINE L1 -6254 155 5 2231 86 13 0 chrX 41659469 41659642 -120940288 - AluY SINE Alu -6 305 125 216 0 0 0 chrX 41659642 41659666 -120940264 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2231 86 13 0 chrX 41659666 41659793 -120940137 - AluY SINE Alu -186 125 1 2033 135 0 0 chrX 41659793 41660090 -120939840 - AluSq SINE Alu -16 297 1 2322 47 0 10 chrX 41660094 41660391 -120939539 - AluY SINE Alu -17 294 1 910 150 0 0 chrX 41660403 41660536 -120939394 - FLAM_C SINE Alu 0 133 1 1277 130 73 120 chrX 41660722 41661038 -120938892 - AluJb SINE Alu 0 302 2 2191 99 0 0 chrX 41661041 41661334 -120938596 - AluSx SINE Alu -19 293 1 2532 48 0 6 chrX 41661366 41661678 -120938252 + AluY SINE Alu 1 310 -1 2502 122 40 40 chrX 41661684 41661722 -120938208 - MSTA LTR MaLR -3 425 388 2379 79 0 0 chrX 41661722 41662026 -120937904 + AluSc SINE Alu 1 304 -5 2238 67 3 19 chrX 41662026 41662341 -120937589 + AluY SINE Alu 1 311 0 2502 122 40 40 chrX 41662341 41662726 -120937204 - MSTA LTR MaLR -38 390 1 721 156 0 0 chrX 41662730 41662839 -120937091 - FLAM_C SINE Alu -32 111 3 487 199 94 64 chrX 41662844 41663015 -120936915 - MER21B LTR ERV1 -22 841 666 570 134 0 52 chrX 41663016 41663113 -120936817 + MER50 LTR ERV1 2 93 -641 404 164 15 0 chrX 41663123 41663190 -120936740 - MER21B LTR ERV1 -203 660 593 1954 138 10 0 chrX 41663190 41663495 -120936435 - AluSx SINE Alu -4 308 1 629 118 0 0 chrX 41663495 41663580 -120936350 - AluJ/FLAM SINE Alu -219 93 9 1820 144 57 3 chrX 41663585 41663883 -120936047 - MER21B LTR ERV1 -548 315 2 1760 145 32 3 chrX 41663916 41664198 -120935732 + AluJb SINE Alu 1 290 -22 822 199 7 0 chrX 41664274 41664454 -120935476 + FRAM SINE Alu 1 181 0 294 164 15 0 chrX 41664458 41664525 -120935405 + Charlie5 DNA MER1_type 55 122 -2490 1188 157 22 56 chrX 41664603 41664651 -120935279 + Charlie5 DNA MER1_type 2243 2291 -333 1619 193 0 3 chrX 41664651 41664962 -120934968 - AluJo SINE Alu -2 310 1 1188 157 22 56 chrX 41664962 41664973 -120934957 + Charlie5 DNA MER1_type 2291 2301 -323 1820 107 68 4 chrX 41664973 41665254 -120934676 - AluSp SINE Alu -12 301 3 1188 157 22 56 chrX 41665254 41665517 -120934413 + Charlie5 DNA MER1_type 2301 2555 -69 552 165 48 0 chrX 41665564 41665667 -120934263 - LTR65 LTR ERV1 -357 312 205 1903 68 109 0 chrX 41666458 41666724 -120933206 - AluSg SINE Alu -15 295 1 2249 190 24 60 chrX 41666945 41667047 -120932883 - LTR65 LTR ERV1 -20 649 545 487 232 27 9 chrX 41667047 41667159 -120932771 - MER81 DNA DNA 0 114 1 2249 190 24 60 chrX 41667159 41667342 -120932588 - LTR65 LTR ERV1 -124 545 357 2127 97 3 0 chrX 41667342 41667630 -120932300 + AluSx SINE Alu 1 289 -23 2249 190 24 60 chrX 41667630 41667643 -120932287 - LTR65 LTR ERV1 -312 357 345 1772 149 33 13 chrX 41667643 41667944 -120931986 + AluJb SINE Alu 1 307 -5 2249 190 24 60 chrX 41667944 41668142 -120931788 - LTR65 LTR ERV1 -324 345 169 588 174 0 10 chrX 41668144 41668242 -120931688 - MER96B DNA MER1_type? 0 417 321 1442 141 74 19 chrX 41668248 41668517 -120931413 - AluJb SINE Alu -28 284 1 1993 123 0 17 chrX 41668530 41668831 -120931099 - AluSx SINE Alu -16 296 1 201 74 0 0 chrX 41668832 41668859 -120931071 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 1487 190 7 3 chrX 41668859 41669154 -120930776 - AluJb SINE Alu -16 296 1 1862 138 3 26 chrX 41669176 41669480 -120930450 - AluJo SINE Alu -15 297 1 2295 69 23 0 chrX 41669530 41669835 -120930095 + AluSp SINE Alu 1 312 -1 376 232 17 99 chrX 41670773 41670954 -120928976 - L1M4 LINE L1 -2885 3261 3096 213 39 0 0 chrX 41671057 41671083 -120928847 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1764 125 7 4 chrX 41671083 41671362 -120928568 - AluSx SINE Alu -32 280 1 1375 125 62 92 chrX 41671435 41671740 -120928190 + AluJb SINE Alu 1 296 -16 580 230 58 100 chrX 41671740 41671844 -120928086 - L1M4 LINE L1 -1715 4431 4324 2105 105 9 25 chrX 41671844 41672159 -120927771 + AluSg SINE Alu 1 310 0 580 230 58 100 chrX 41672159 41672356 -120927574 - L1M4 LINE L1 -1822 4324 4141 1504 112 48 32 chrX 41672383 41672633 -120927297 - AluSx SINE Alu 0 312 59 427 130 0 0 chrX 41872633 41872702 -120727228 + AluS SINE Alu 232 300 -10 300 116 0 0 chrX 41872708 41872751 -120727179 + L1MB1 LINE L1 6124 6166 -2 1927 136 16 52 chrX 41872754 41872839 -120727091 + L1MB8 LINE L1 5811 5898 -280 1854 110 46 4 chrX 41872839 41873120 -120726810 + AluSx SINE Alu 1 293 -19 1927 136 16 52 chrX 41873120 41873416 -120726514 + L1MB8 LINE L1 5898 6178 0 231 269 0 0 chrX 41873457 41873509 -120726421 + L2 LINE L2 3262 3313 0 376 333 65 27 chrX 41873522 41873708 -120726222 + L1ME LINE L1 4031 4223 -1923 366 288 101 19 chrX 41873923 41873990 -120725940 + L1ME LINE L1 4596 4656 -1490 2179 108 0 10 chrX 41873990 41874296 -120725634 + AluSg SINE Alu 1 303 -7 366 288 101 19 chrX 41874296 41874652 -120725278 + L1ME LINE L1 4656 5054 -1092 516 264 97 23 chrX 41874832 41875131 -120724799 + L1ME LINE L1 5283 5603 -559 419 224 155 6 chrX 41875170 41875331 -120724599 + L1M4 LINE L1 2790 2974 -3172 1465 145 21 55 chrX 41875337 41875626 -120724304 + AluJo SINE Alu 15 293 -19 1286 133 9 5 chrX 41875627 41875837 -120724093 + AluJo SINE Alu 86 296 -16 412 283 44 52 chrX 41875848 41876085 -120723845 + L1M4 LINE L1 2954 3214 -2932 232 293 121 32 chrX 41878065 41878222 -120721708 - L1M4 LINE L1 -3313 2833 2663 188 67 33 0 chrX 41878327 41878357 -120721573 + (GA)n Simple_repeat Simple_repeat 2 32 0 249 253 52 55 chrX 41878557 41878749 -120721181 - L1P5 LINE L1 -726 5430 5243 249 93 0 47 chrX 41878932 41878975 -120720955 + Alu SINE Alu 107 147 -154 1200 126 6 0 chrX 41878988 41879171 -120720759 + AluSg/x SINE Alu 119 302 -8 1561 209 96 96 chrX 41879432 41880039 -120719891 - MER92B LTR ERV1 -29 607 1 1991 121 7 3 chrX 41880304 41880602 -120719328 + AluSx SINE Alu 1 299 -13 2172 98 17 0 chrX 41880618 41880913 -120719017 + AluSx SINE Alu 2 301 -11 581 304 98 63 chrX 41880913 41881201 -120718729 - L1M4 LINE L1 -1534 4612 4302 1469 174 43 4 chrX 41881201 41881477 -120718453 - AluJb SINE Alu -6 306 20 581 304 98 63 chrX 41881477 41881629 -120718301 - L1M4 LINE L1 -1844 4302 4157 937 143 87 41 chrX 41881639 41881675 -120718255 - MER3 DNA MER1_type -4 205 172 1911 150 10 0 chrX 41881675 41881982 -120717948 - AluJb SINE Alu -2 310 1 937 143 87 41 chrX 41881982 41882141 -120717789 - MER3 DNA MER1_type -37 172 1 269 293 10 10 chrX 41882196 41882295 -120717635 - L1P5 LINE L1 -2017 4129 4031 1688 149 53 0 chrX 41882341 41882623 -120717307 - AluJb SINE Alu -11 301 5 2166 117 0 0 chrX 41882633 41882940 -120716990 - AluSx SINE Alu -5 307 1 2321 78 3 0 chrX 41882969 41883263 -120716667 + AluSp SINE Alu 1 295 -18 369 93 0 0 chrX 41883586 41883640 -120716290 + (CA)n Simple_repeat Simple_repeat 1 54 0 685 236 119 118 chrX 41883926 41884413 -120715517 + MLT1G1 LTR MaLR 1 491 -104 1430 183 26 33 chrX 41884413 41884719 -120715211 + AluJo SINE Alu 3 306 -6 685 236 119 118 chrX 41884719 41884825 -120715105 + MLT1G1 LTR MaLR 491 595 0 1396 199 54 7 chrX 41885100 41885396 -120714534 - AluJb SINE Alu -2 310 1 2019 211 65 27 chrX 41885427 41885844 -120714086 - MER77 LTR ERV1 -6 599 100 2388 116 0 23 chrX 41885844 41886189 -120713741 - MER1B DNA MER1_type 0 337 1 2019 211 65 27 chrX 41886189 41886291 -120713639 - MER77 LTR ERV1 -505 100 3 1757 156 7 13 chrX 41886391 41886699 -120713231 - AluJb SINE Alu -6 306 1 2342 87 3 0 chrX 41886798 41887109 -120712821 - AluSx SINE Alu 0 312 1 4209 159 52 14 chrX 41887162 41887847 -120712083 - MER21B LTR ERV1 -113 750 36 2564 116 83 5 chrX 41887847 41888244 -120711686 - MSTA LTR MaLR 0 428 1 4209 159 52 14 chrX 41888244 41888267 -120711663 - MER21B LTR ERV1 -827 36 15 1238 87 46 26 chrX 41888295 41888440 -120711490 - L1MA8 LINE L1 -40 6251 6100 2423 112 21 24 chrX 41888440 41888816 -120711114 - THE1C LTR MaLR 0 375 1 1238 87 46 26 chrX 41888816 41888865 -120711065 - L1MA8 LINE L1 -191 6100 6053 857 221 84 33 chrX 41888874 41889298 -120710632 - MLT1D LTR MaLR -8 497 5 5228 185 33 99 chrX 41889302 41890207 -120709723 - MLT1D-int LTR MaLR -1 1370 597 2037 125 23 0 chrX 41890207 41890512 -120709418 - AluSx SINE Alu 0 312 1 5228 185 33 99 chrX 41890512 41891070 -120708860 - MLT1D-int LTR MaLR -774 597 4 1795 191 153 18 chrX 41891071 41891510 -120708420 - MLT1D LTR MaLR -7 498 1 421 309 79 76 chrX 41891842 41892245 -120707685 + HAL1b LINE L1 -4 255 -1076 497 196 0 0 chrX 41892251 41892343 -120707587 + L1MEc LINE L1 38 129 -6267 1758 141 6 55 chrX 41892343 41892670 -120707260 + AluSx SINE Alu 1 311 -1 1677 135 2 148 chrX 41892677 41892916 -120707014 - LTR8 LTR ERV1 -349 342 183 2051 118 7 7 chrX 41892916 41893213 -120706717 + AluSx SINE Alu 1 297 -15 1677 135 2 148 chrX 41893213 41893373 -120706557 - LTR8 LTR ERV1 -508 183 1 1841 194 19 13 chrX 41893403 41893779 -120706151 + MER68 LTR ERV1 2 423 -182 10561 151 21 20 chrX 41893779 41894079 -120705851 + HERVL68 LTR ERVL 34 332 -2705 2014 121 0 0 chrX 41894079 41894404 -120705526 + AluSx SINE Alu 1 325 0 10561 151 21 20 chrX 41894404 41894745 -120705185 + HERVL68 LTR ERVL 332 671 -2366 2557 140 74 0 chrX 41894745 41895166 -120704764 + LTR47A LTR ERVL 1 452 0 10561 151 21 20 chrX 41895166 41896301 -120703629 + HERVL68 LTR ERVL 671 1814 -1223 2001 113 33 0 chrX 41896301 41896643 -120703287 - AluJb SINE Alu 0 352 1 6854 143 8 7 chrX 41896643 41897735 -120702195 + HERVL68 LTR ERVL 1794 2886 -151 1141 96 25 61 chrX 41897736 41897748 -120702182 - AluJo SINE Alu -14 298 287 369 0 0 0 chrX 41897748 41897789 -120702141 + (TG)n Simple_repeat Simple_repeat 2 42 0 1141 96 25 61 chrX 41897789 41897974 -120701956 - AluJo SINE Alu -25 287 108 2409 91 43 14 chrX 41897976 41898368 -120701562 - MLT2A1 LTR ERVL 0 453 1 703 140 0 0 chrX 41898369 41898476 -120701454 - AluJo SINE Alu -201 111 5 849 130 36 0 chrX 41898480 41898618 -120701312 + HERVL68 LTR ERVL 2884 3026 -11 2269 226 25 27 chrX 41898620 41899178 -120700752 + MER68 LTR ERV1 4 560 -2 2373 81 0 3 chrX 41899272 41899582 -120700348 + AluSx SINE Alu 1 309 -3 2490 202 82 70 chrX 41899590 41899697 -120700233 + L1MC5 LINE L1 6508 6612 -1349 315 0 0 0 chrX 41899697 41899732 -120700198 + (CA)n Simple_repeat Simple_repeat 1 35 0 2490 202 82 70 chrX 41899732 41900530 -120699400 + L1MC5 LINE L1 6612 7429 -532 251 221 76 55 chrX 41900704 41900849 -120699081 + L1ME3A LINE L1 6021 6168 -2 2183 103 3 0 chrX 41900912 41901213 -120698717 + AluSq SINE Alu 1 302 -11 2292 92 9 0 chrX 41901661 41901978 -120697952 - L1MB2 LINE L1 -3 6168 5849 2155 107 10 0 chrX 41901992 41902300 -120697630 - AluSx SINE Alu -1 311 1 765 180 16 0 chrX 41902304 41902432 -120697498 - FLAM_C SINE Alu -3 130 1 264 280 54 21 chrX 41902832 41902925 -120697005 - L1ME LINE L1 -5912 158 63 238 302 0 0 chrX 41902922 41902985 -120696945 - L1M4 LINE L1 -5604 938 876 * 363 301 32 32 chrX 41903560 41903779 -120696151 - L1M4 LINE L1 -6307 235 17 705 100 82 0 chrX 41903836 41903946 -120695984 - FLAM_C SINE Alu -14 119 1 2339 82 0 13 chrX 41908342 41908657 -120691273 - AluSx SINE Alu -1 311 1 800 178 59 30 chrX 41908672 41908841 -120691089 + MER20B DNA MER1_type 1 174 -45 762 153 79 23 chrX 41909286 41909463 -120690467 + L1MCa LINE L1 50 236 -6190 1973 81 0 0 chrX 41909623 41909882 -120690048 - AluSx SINE Alu -5 307 49 2466 128 25 48 chrX 41909894 41910097 -120689833 - L1MB2 LINE L1 -262 5909 5703 1487 192 0 0 chrX 41910097 41910357 -120689573 + AluJo SINE Alu 1 260 -52 2466 128 25 48 chrX 41910357 41910591 -120689339 - L1MB2 LINE L1 -468 5703 5482 187 54 54 0 chrX 41910866 41910903 -120689027 + A-rich Low_complexity Low_complexity 2 40 0 1921 148 0 3 chrX 41910912 41911216 -120688714 + AluJb SINE Alu 1 303 -9 747 240 72 67 chrX 41911217 41911563 -120688367 + L1MA9 LINE L1 5935 6282 -30 2156 128 0 0 chrX 41911581 41911893 -120688037 + AluSx SINE Alu 1 312 0 1194 162 0 15 chrX 41913001 41913205 -120686725 + AluJb SINE Alu 86 286 -26 360 0 0 0 chrX 41913277 41913317 -120686613 + (TA)n Simple_repeat Simple_repeat 2 41 0 2257 96 0 0 chrX 41913317 41913620 -120686310 - AluSx SINE Alu -9 303 1 930 120 0 0 chrX 41913662 41913795 -120686135 - FLAM_C SINE Alu 0 133 1 1126 113 5 0 chrX 41913837 41914031 -120685899 - Charlie5 DNA MER1_type 0 2624 2430 1472 124 8 64 chrX 41914070 41914285 -120685645 + L1M3 LINE L1 5454 5653 -518 1605 156 6 75 chrX 41914285 41914494 -120685436 + AluJb SINE Alu 2 181 -131 2207 91 7 0 chrX 41914494 41914792 -120685138 - AluSx SINE Alu -12 300 1 1605 156 6 75 chrX 41914792 41914916 -120685014 + AluJb SINE Alu 181 312 0 1472 124 8 64 chrX 41914916 41914967 -120684963 + L1M3 LINE L1 5653 5705 -466 1705 181 0 7 chrX 41914971 41915264 -120684666 - AluJb SINE Alu -21 291 1 1403 121 8 54 chrX 41915595 41915677 -120684253 + L1M3 LINE L1 5486 5570 -601 1978 135 0 3 chrX 41915677 41915973 -120683957 + AluSx SINE Alu 6 300 -12 1403 121 8 54 chrX 41915973 41916130 -120683800 + L1M3 LINE L1 5570 5714 -457 720 226 0 0 chrX 41916135 41916259 -120683671 - FRAM SINE Alu -52 124 1 239 186 0 68 chrX 41916264 41916323 -120683607 - L1MA9 LINE L1 -370 5942 5888 * 611 131 83 12 chrX 41916315 41916436 -120683494 + L1MCa LINE L1 1627 2192 -4235 239 237 111 56 chrX 41917288 41917486 -120682444 - L1ME LINE L1 -227 5894 5686 243 185 19 19 chrX 41917531 41917585 -120682345 + GA-rich Low_complexity Low_complexity 3 56 0 2135 100 7 3 chrX 41918947 41919256 -120680674 - AluSx SINE Alu -2 310 1 1142 189 48 2 chrX 41919291 41919578 -120680352 + MER2 DNA MER2_type 1 341 -4 2281 94 3 0 chrX 41919804 41920113 -120679817 + AluSx SINE Alu 1 310 -2 427 114 38 0 chrX 41920526 41920605 -120679325 + CT-rich Low_complexity Low_complexity 2 83 0 1327 163 61 49 chrX 41920616 41920801 -120679129 - AluJo SINE Alu -45 267 77 1775 140 7 40 chrX 41920801 41921101 -120678829 - AluJo SINE Alu -22 290 1 1327 163 61 49 chrX 41921101 41921179 -120678751 - AluJo SINE Alu -235 77 1 224 330 0 11 chrX 41921589 41921680 -120678250 - L2 LINE L2 -665 2649 2560 230 330 11 23 chrX 41921699 41921787 -120678143 + MIR SINE MIR 168 254 -8 1703 145 42 7 chrX 41922647 41922813 -120677117 - AluJb SINE Alu -13 299 117 197 33 33 0 chrX 41922813 41922843 -120677087 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1703 145 42 7 chrX 41922843 41922965 -120676965 - AluJb SINE Alu -195 117 1 1525 157 10 51 chrX 41922999 41923293 -120676637 + AluJo SINE Alu 1 282 -30 245 345 86 41 chrX 41923359 41923670 -120676260 - L2 LINE L2 -341 2973 2644 2642 130 21 58 chrX 41923670 41923967 -120675963 - MLT1C LTR MaLR 0 467 193 2232 114 13 0 chrX 41923967 41924275 -120675655 + AluSx SINE Alu 1 312 0 2642 130 21 58 chrX 41924275 41924462 -120675468 - MLT1C LTR MaLR -274 193 1 245 345 86 41 chrX 41924462 41924489 -120675441 - L2 LINE L2 -670 2644 2620 2352 97 3 0 chrX 41924533 41924831 -120675099 + AluSx SINE Alu 1 299 -13 183 286 193 52 chrX 41924851 41925043 -120674887 - L2 LINE L2 -782 2532 2314 2053 128 0 3 chrX 41925133 41925437 -120674493 + AluJb SINE Alu 3 305 0 2453 98 0 0 chrX 41925562 41925868 -120674062 + AluSq SINE Alu 1 306 -7 2144 122 3 10 chrX 41925868 41926162 -120673768 + AluSg SINE Alu 1 292 -18 437 280 0 9 chrX 41926182 41926289 -120673641 + L2 LINE L2 3187 3292 -21 1978 148 7 3 chrX 41926304 41926594 -120673336 - AluJb SINE Alu -21 291 1 236 173 0 39 chrX 41926829 41926881 -120673049 + Alu SINE Alu 87 136 -166 1507 147 12 114 chrX 41926881 41927214 -120672716 + AluJo SINE Alu 2 300 -2 1727 217 24 49 chrX 41927341 41927720 -120672210 + L1ME1 LINE L1 5682 6048 -118 2584 80 3 0 chrX 41927720 41928031 -120671899 - AluSq SINE Alu -1 312 1 1727 217 24 49 chrX 41928031 41928145 -120671785 + L1ME1 LINE L1 6048 6163 -3 554 320 23 23 chrX 41928317 41928620 -120671310 + L1MD1 LINE L1 4068 4370 -1776 1978 146 10 3 chrX 41928620 41928915 -120671015 + AluJo SINE Alu 1 297 -15 764 146 15 0 chrX 41928915 41929045 -120670885 + L1MC1 LINE L1 5966 6097 -236 698 133 0 0 chrX 41929051 41929164 -120670766 + L1MD1 LINE L1 4748 4860 -1286 1250 174 9 26 chrX 41929167 41929397 -120670533 - AluJo SINE Alu 0 312 87 1281 167 0 0 chrX 41929401 41929599 -120670331 - AluJb SINE Alu -33 279 82 4586 172 67 60 chrX 41929599 41930142 -120669788 + L1MD1 LINE L1 4847 5385 -857 2245 122 0 22 chrX 41930142 41930461 -120669469 + AluSx SINE Alu 1 312 0 4586 172 67 60 chrX 41930461 41930886 -120669044 + L1MD1 LINE L1 5385 5805 -437 2220 121 0 13 chrX 41930886 41931192 -120668738 + AluJb SINE Alu 1 302 -10 4586 172 67 60 chrX 41931192 41931597 -120668333 + L1MD1 LINE L1 5805 6242 0 446 280 238 14 chrX 41931703 41931917 -120668013 + MIR SINE MIR 1 262 0 371 168 17 0 chrX 41932150 41932295 -120667635 + L1MC4a LINE L1 6939 7222 -586 398 71 107 0 chrX 41932299 41932383 -120667547 - Charlie5 DNA MER1_type -118 2494 2402 1059 99 0 0 chrX 41932384 41932515 -120667415 + AluSq/x SINE Alu 1 131 -182 2142 82 0 0 chrX 41932523 41932780 -120667150 + AluSc SINE Alu 1 257 -52 2006 142 127 21 chrX 41932851 41933238 -120666692 + MSTA LTR MaLR 1 428 0 909 166 14 0 chrX 41933240 41933385 -120666545 - AluSg/x SINE Alu -32 278 132 28 0 0 0 chrX 41933602 41933630 -120666300 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 41933670 41933692 -120666238 + AT_rich Low_complexity Low_complexity 1 22 0 1961 133 0 24 chrX 41933692 41933985 -120665945 - AluSx SINE Alu -26 286 1 317 285 97 48 chrX 41934095 41934281 -120665649 - L1ME4a LINE L1 -176 5945 5751 21 0 0 0 chrX 41934454 41934475 -120665455 + AT_rich Low_complexity Low_complexity 1 21 0 1556 124 3 133 chrX 41934477 41934846 -120665084 + AluJo SINE Alu 1 302 0 919 150 13 13 chrX 41934949 41935102 -120664828 - AluSg/x SINE Alu -16 294 142 363 117 2 2 chrX 41935102 41935166 -120664764 - Alu SINE Alu -244 55 1 2032 107 76 0 chrX 41935936 41936225 -120663705 + AluSq SINE Alu 1 311 -2 2295 99 0 0 chrX 41937072 41937384 -120662546 + AluSx SINE Alu 2 313 0 2184 100 4 0 chrX 41937384 41937691 -120662239 + AluSg SINE Alu 1 308 0 436 160 75 0 chrX 41937695 41937789 -120662141 - L1MC4 LINE L1 -3 8039 7939 1760 160 17 3 chrX 41937797 41938084 -120661846 - AluJo SINE Alu -21 291 1 779 144 25 6 chrX 41938159 41938319 -120661611 + L1MC2 LINE L1 5814 5976 -368 945 142 8 0 chrX 41938319 41938453 -120661477 + AluJo SINE Alu 1 135 -177 235 258 75 0 chrX 41938488 41938581 -120661349 + Zaphod DNA AcHobo 3931 4030 -1 2180 80 0 73 chrX 41938598 41938912 -120661018 + AluSg SINE Alu 1 291 -19 466 312 51 45 chrX 41938933 41939143 -120660787 + L1MC/D LINE L1 4695 4909 -1237 1982 165 0 0 chrX 41939143 41939440 -120660490 + AluJo SINE Alu 1 297 -15 466 312 51 45 chrX 41939440 41939562 -120660368 + L1MC/D LINE L1 4909 5029 -1117 1961 181 0 0 chrX 41939562 41939872 -120660058 + AluJb SINE Alu 1 310 -2 248 313 0 0 chrX 41939971 41940067 -120659863 + L1MC/D LINE L1 5348 5443 -799 2344 89 0 0 chrX 41940077 41940368 -120659562 + AluSc SINE Alu 1 291 -18 2440 83 7 0 chrX 41940750 41941051 -120658879 - AluSx SINE Alu -9 303 1 1236 289 54 5 chrX 41941170 41941578 -120658352 + LTR16A LTR ERVL 16 443 -7 2262 84 0 0 chrX 41941578 41941852 -120658078 + AluSx SINE Alu 29 302 -10 1886 150 0 20 chrX 41941974 41942267 -120657663 + AluJo SINE Alu 1 287 -25 21 36 0 0 chrX 41942291 41942319 -120657611 + AT_rich Low_complexity Low_complexity 1 28 0 2426 99 0 0 chrX 41942564 41942867 -120657063 + AluSx SINE Alu 1 303 -9 2504 74 3 0 chrX 41943315 41943611 -120656319 + AluSq SINE Alu 1 297 -16 1849 143 4 0 chrX 41943851 41944147 -120655783 - AluJo SINE Alu 0 307 11 1307 221 86 35 chrX 41944182 41944553 -120655377 - MLT1B LTR MaLR 0 390 1 2502 84 0 0 chrX 41944761 41945069 -120654861 + AluSg SINE Alu 2 309 -1 1950 88 113 7 chrX 41945329 41945603 -120654327 + AluSg1 SINE Alu 1 303 -6 1882 161 0 19 chrX 41945617 41945927 -120654003 + AluJo SINE Alu 1 304 -8 1123 241 0 37 chrX 41946017 41946287 -120653643 + L1MEc LINE L1 37 296 -6100 395 248 64 0 chrX 41946258 41946383 -120653547 + L1MD2 LINE L1 6238 6370 -58 * 852 134 55 0 chrX 41946417 41946544 -120653386 - AluJb SINE Alu -32 280 147 756 221 94 76 chrX 41946546 41946718 -120653212 + L1MEc LINE L1 2354 2521 -3694 2533 90 0 0 chrX 41946718 41947029 -120652901 + AluSx SINE Alu 1 311 -1 756 221 94 76 chrX 41947029 41947186 -120652744 + L1MEc LINE L1 2521 2689 -3526 1129 188 19 0 chrX 41947187 41947395 -120652535 - MLT1B LTR MaLR 0 390 179 1566 181 30 33 chrX 41947405 41947709 -120652221 - AluJo SINE Alu -5 307 5 1100 139 36 0 chrX 41947725 41947891 -120652039 - AluSp SINE Alu -5 308 137 877 139 61 12 chrX 41947893 41948058 -120651872 - MLT1B LTR MaLR -217 173 1 209 383 28 0 chrX 41948305 41948412 -120651518 - MIR SINE MIR -3 259 150 208 247 62 62 chrX 41948467 41948548 -120651382 - MIR SINE MIR -124 138 58 24 53 0 0 chrX 41948801 41948839 -120651091 + AT_rich Low_complexity Low_complexity 1 38 0 2140 61 8 8 chrX 41949366 41949627 -120650303 - AluY SINE Alu -15 296 36 2161 97 13 7 chrX 41949710 41950020 -120649910 + AluSx SINE Alu 1 312 0 927 147 98 0 chrX 41951136 41951299 -120648631 + AluJb SINE Alu 118 296 -16 1270 213 134 50 chrX 41951864 41951927 -120648003 - L1ME2 LINE L1 -3 6163 6107 2092 149 3 3 chrX 41951927 41952236 -120647694 + AluJb SINE Alu 1 309 -3 1270 213 134 50 chrX 41952236 41952633 -120647297 - L1ME2 LINE L1 -59 6107 5664 370 208 32 8 chrX 41952654 41952806 -120647124 - MER63A DNA MER1_type -26 184 1 1178 159 5 19 chrX 41952806 41953020 -120646910 - L1ME2 LINE L1 -496 5670 5460 665 149 158 0 chrX 41953023 41953137 -120646793 + FLAM_C SINE Alu 2 133 0 2464 100 0 0 chrX 41953186 41953517 -120646413 + AluSx SINE Alu 1 331 0 3156 138 86 27 chrX 41953736 41953813 -120646117 - MER67C LTR ERV1 0 710 639 2156 104 6 47 chrX 41953813 41954131 -120645799 - AluSx SINE Alu -6 306 2 3156 138 86 27 chrX 41954131 41954719 -120645211 - MER67C LTR ERV1 -71 639 6 190 280 40 0 chrX 41955914 41955964 -120643966 - L2 LINE L2 -3250 64 13 2195 89 0 4 chrX 41956409 41956689 -120643241 + AluSq SINE Alu 35 313 0 273 267 75 17 chrX 41956864 41956984 -120642946 - L2 LINE L2 -531 2783 2657 4513 142 38 0 chrX 41957620 41958323 -120641607 - MER44D DNA MER2_type -3 602 1 468 254 71 0 chrX 41958736 41958862 -120641068 + MIR SINE MIR 68 202 -60 204 209 0 23 chrX 41959604 41959647 -120640283 - L2 LINE L2 0 3313 3272 814 221 0 6 chrX 41959663 41959826 -120640104 + MIR SINE MIR 84 245 -17 446 231 23 0 chrX 41959837 41959967 -120639963 + MER20B DNA MER1_type 503 635 -148 309 216 24 32 chrX 41959968 41960093 -120639837 + (TTATA)n Simple_repeat Simple_repeat 5 128 0 308 172 141 0 chrX 41960126 41960225 -120639705 + MER20B DNA MER1_type 634 746 -37 27 0 0 0 chrX 41960354 41960381 -120639549 + AT_rich Low_complexity Low_complexity 1 27 0 851 246 182 14 chrX 41960390 41960687 -120639243 + L2 LINE L2 2967 3313 0 483 275 74 0 chrX 41962273 41962422 -120637508 - MIR SINE MIR -95 167 8 288 0 0 0 chrX 41965284 41965316 -120634614 + (TG)n Simple_repeat Simple_repeat 2 33 0 324 0 0 0 chrX 41965386 41965422 -120634508 + (TG)n Simple_repeat Simple_repeat 2 37 0 214 259 0 17 chrX 41967176 41967234 -120632696 + GA-rich Low_complexity Low_complexity 2 58 0 1686 184 72 6 chrX 41969634 41969954 -120629976 + MER58B DNA MER1_type 1 341 0 448 193 0 0 chrX 41971023 41971111 -120628819 + L1MB8 LINE L1 6091 6178 0 555 78 39 0 chrX 41971438 41971515 -120628415 - MADE1 DNA Mariner 0 80 1 290 264 79 50 chrX 41973486 41973626 -120626304 + MIR SINE MIR 9 152 -110 586 302 0 34 chrX 41974077 41974256 -120625674 + MIR SINE MIR 90 262 0 183 163 0 47 chrX 41974316 41974359 -120625571 + MIR SINE MIR 182 222 -40 1001 103 0 22 chrX 41974360 41974496 -120625434 - FLAM_C SINE Alu 0 133 1 2363 91 0 0 chrX 41974522 41974818 -120625112 + AluSq SINE Alu 1 296 -17 2192 93 17 7 chrX 41974827 41975118 -120624812 + AluSx SINE Alu 1 294 -18 1064 106 0 0 chrX 41975118 41975260 -120624670 - L1PB4 LINE L1 -14 6142 6001 186 264 0 57 chrX 41975260 41975313 -120624617 + MIR SINE MIR 213 262 0 192 305 84 21 chrX 41975348 41975443 -120624487 + MIR SINE MIR 150 250 -12 698 273 110 10 chrX 41975748 41975957 -120623973 + MIR SINE MIR 30 259 -3 497 267 9 0 chrX 41975969 41976085 -120623845 + MIR SINE MIR 18 134 -128 225 171 0 0 chrX 41976197 41976232 -120623698 + MIR SINE MIR 219 253 -9 206 233 0 55 chrX 41976382 41976455 -120623475 + G-rich Low_complexity Low_complexity 2 70 0 719 281 101 0 chrX 41977802 41978019 -120621911 + L2 LINE L2 2848 3086 -227 2241 80 3 242 chrX 41978037 41978674 -120621256 - MER31A LTR ERV1 0 485 1 804 237 34 19 chrX 41978678 41978885 -120621045 + L2 LINE L2 3103 3312 -1 206 225 28 56 chrX 41978870 41978941 -120620989 + MIR SINE MIR 178 246 -16 * 207 0 0 0 chrX 41979029 41979052 -120620878 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1932 128 21 3 chrX 41983203 41983485 -120616445 + AluSg SINE Alu 11 297 -13 2357 69 20 30 chrX 41983485 41983790 -120616140 + AluY SINE Alu 1 302 -9 904 306 22 0 chrX 41983790 41984022 -120615908 + MIR SINE MIR 24 260 -2 1897 146 29 0 chrX 41985059 41985358 -120614572 - AluJb SINE Alu 0 307 1 2415 84 0 0 chrX 41985612 41985908 -120614022 + AluSx SINE Alu 1 296 -16 360 369 12 36 chrX 41986061 41986229 -120613701 - L1M4 LINE L1 -1235 4911 4748 1544 196 29 21 chrX 41986231 41986550 -120613380 + AluJo SINE Alu 1 321 0 545 297 40 22 chrX 41986598 41987042 -120612888 - L1M4 LINE L1 -1419 4727 4284 2040 131 35 0 chrX 41987044 41987215 -120612715 - AluJo SINE Alu -8 304 117 188 33 0 33 chrX 41987215 41987245 -120612685 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2040 131 35 0 chrX 41987245 41987363 -120612567 - AluJo SINE Alu -195 117 5 410 303 92 24 chrX 41987367 41987446 -120612484 - L1M4 LINE L1 -2370 3776 3704 2243 118 3 0 chrX 41987446 41987742 -120612188 - AluSx SINE Alu -15 297 1 410 303 92 24 chrX 41987742 41988042 -120611888 - L1M4 LINE L1 -2442 3704 3371 289 167 77 0 chrX 41988036 41988114 -120611816 + L1MC4a LINE L1 6095 6178 -1630 * 1952 151 0 17 chrX 41988124 41988423 -120611507 + AluJb SINE Alu 3 296 -16 2240 121 6 10 chrX 41988423 41988736 -120611194 + AluSx SINE Alu 1 312 0 2509 171 35 119 chrX 41988736 41988889 -120611041 + MER21B LTR ERV1 213 377 -486 2462 87 3 0 chrX 41988889 41989200 -120610730 - AluSp SINE Alu -1 312 1 2509 171 35 119 chrX 41989200 41989735 -120610195 + MER21B LTR ERV1 377 789 -74 547 207 8 23 chrX 41989781 41989945 -120609985 + L1MC4a LINE L1 6597 6716 -1092 6516 218 47 30 chrX 41990034 41991225 -120608705 + L1M4 LINE L1 54 1223 -5421 2406 98 0 3 chrX 41991225 41991530 -120608400 + AluSq SINE Alu 1 304 -9 6516 218 47 30 chrX 41991530 41992588 -120607342 + L1M4 LINE L1 1223 2261 -4383 1804 167 13 20 chrX 41992588 41992719 -120607211 + AluJb SINE Alu 1 131 -181 2148 110 0 3 chrX 41992719 41993043 -120606887 + AluSg SINE Alu 1 323 0 1804 167 13 20 chrX 41993043 41993209 -120606721 + AluJb SINE Alu 131 297 -15 6516 218 47 30 chrX 41993209 41993428 -120606502 + L1M4 LINE L1 2261 2475 -4169 3436 117 0 36 chrX 41993428 41993960 -120605970 - MER75 DNA T2_type 0 514 2 6516 218 47 30 chrX 41993960 41994376 -120605554 + L1M4 LINE L1 2475 2882 -3762 1621 162 40 37 chrX 41994376 41994672 -120605258 - AluJb SINE Alu -15 297 1 6516 218 47 30 chrX 41994672 41995648 -120604282 + L1M4 LINE L1 2882 4047 -2597 930 144 0 0 chrX 41995648 41995780 -120604150 + FLAM_C SINE Alu 1 132 -1 6516 218 47 30 chrX 41995780 41996234 -120603696 + L1M4 LINE L1 4047 4492 -2152 1061 245 0 16 chrX 41996241 41996486 -120603444 - MIR SINE MIR -21 241 1 2205 78 57 0 chrX 41996551 41996832 -120603098 + AluSc SINE Alu 1 297 -12 24 77 0 0 chrX 41997149 41997201 -120602729 + AT_rich Low_complexity Low_complexity 1 52 0 1720 163 0 0 chrX 41997360 41997624 -120602306 - AluJo SINE Alu -2 310 47 26 0 0 0 chrX 41997625 41997651 -120602279 + AT_rich Low_complexity Low_complexity 1 26 0 26 82 0 0 chrX 41998019 41998080 -120601850 + AT_rich Low_complexity Low_complexity 1 61 0 2446 86 0 3 chrX 41998080 41998382 -120601548 - AluSp SINE Alu -12 301 1 2066 113 0 0 chrX 41998458 41998724 -120601206 - AluSg SINE Alu -44 266 1 908 237 91 59 chrX 41999877 42000067 -120599863 + L2 LINE L2 2926 3108 -205 2116 120 30 0 chrX 42000067 42000366 -120599564 - AluSq SINE Alu -5 308 1 908 237 91 59 chrX 42000366 42000550 -120599380 + L2 LINE L2 3108 3312 -1 218 320 0 0 chrX 42000560 42000610 -120599320 + L2 LINE L2 3221 3270 -2 1867 163 0 17 chrX 42000615 42000904 -120599026 + AluJb SINE Alu 1 284 -28 198 0 0 0 chrX 42000904 42000926 -120599004 + (TA)n Simple_repeat Simple_repeat 2 23 0 1686 149 6 68 chrX 42001769 42001923 -120598007 + AluJo SINE Alu 1 126 -186 2113 122 7 10 chrX 42001923 42002226 -120597704 + AluSq SINE Alu 1 302 -11 1686 149 6 68 chrX 42002226 42002393 -120597537 + AluJo SINE Alu 126 302 -10 823 35 35 0 chrX 42002394 42002507 -120597423 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 327 25 0 0 chrX 42003056 42003096 -120596834 + (CA)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chrX 42003179 42003213 -120596717 + (CA)n Simple_repeat Simple_repeat 2 35 0 1009 292 58 3 chrX 42003415 42003761 -120596169 + LTR16A LTR ERVL 86 450 0 395 289 10 0 chrX 42003796 42003900 -120596030 + HERV16 LTR ERVL 42 146 -4850 662 219 43 12 chrX 42003903 42004067 -120595863 + HERVL LTR ERVL 3087 3255 -2399 2128 301 90 24 chrX 42004240 42005152 -120594778 + HERVL LTR ERVL 346 1317 -3679 * 6384 322 62 32 chrX 42005150 42007024 -120592906 + HERVL LTR ERVL 2070 4078 -1686 2527 75 7 0 chrX 42007024 42007330 -120592600 + AluSx SINE Alu 1 308 -4 6384 322 62 32 chrX 42007330 42008641 -120591289 + HERVL LTR ERVL 4078 5349 -415 1303 242 38 21 chrX 42008856 42009228 -120590702 + LTR16A LTR ERVL 59 436 -14 432 192 39 0 chrX 42009429 42009533 -120590397 + MER112 DNA MER1_type 65 172 -88 2286 86 45 0 chrX 42009798 42010088 -120589842 + AluSg SINE Alu 1 303 -7 224 371 11 6 chrX 42014742 42014920 -120585010 + (CA)n Simple_repeat Simple_repeat 2 180 0 394 258 106 13 chrX 42015321 42015472 -120584458 - MIR SINE MIR -12 250 86 207 217 22 0 chrX 42015695 42015741 -120584189 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 414 263 117 0 chrX 42015761 42015898 -120584032 + MIR SINE MIR 19 171 -91 570 208 87 13 chrX 42017211 42017360 -120582570 + MIR SINE MIR 101 260 -2 203 227 23 0 chrX 42017668 42017712 -120582218 + L2 LINE L2 3228 3272 0 181 205 103 0 chrX 42018668 42018707 -120581223 - L2 LINE L2 -4 3309 3267 1234 117 0 17 chrX 42018716 42018895 -120581035 - FRAM SINE Alu 0 176 1 956 189 24 61 chrX 42018896 42019108 -120580822 + MIR SINE MIR 59 262 0 436 239 203 20 chrX 42021913 42022164 -120577766 + L2 LINE L2 2565 2861 -453 1309 145 18 27 chrX 42023347 42023568 -120576362 + MER20 DNA MER1_type 1 219 0 190 267 53 67 chrX 42024205 42024280 -120575650 + L2 LINE L2 3220 3293 -20 463 234 0 88 chrX 42024331 42024468 -120575462 + MIR SINE MIR 69 193 -69 406 232 18 101 chrX 42024760 42024871 -120575059 + MIR SINE MIR 89 183 -79 2282 107 0 0 chrX 42024871 42025169 -120574761 - AluSx SINE Alu -14 298 1 406 232 18 101 chrX 42025169 42025225 -120574705 + MIR SINE MIR 183 242 -20 238 156 89 0 chrX 42025194 42025239 -120574691 + L2 LINE L2 3216 3264 -8 * 386 255 102 10 chrX 42025237 42025335 -120574595 - L2 LINE L2 -4 3309 3203 1772 161 13 17 chrX 42025429 42025728 -120574202 - AluJo SINE Alu -9 303 6 201 94 0 0 chrX 42025733 42025765 -120574165 + (T)n Simple_repeat Simple_repeat 1 32 0 2517 93 0 0 chrX 42026138 42026449 -120573481 + AluSx SINE Alu 1 311 -1 536 244 58 17 chrX 42026662 42026834 -120573096 + L2 LINE L2 3135 3313 0 * 580 273 42 74 chrX 42026801 42027112 -120572818 - L2 LINE L2 -983 2331 2031 1521 183 20 23 chrX 42027233 42027539 -120572391 - AluJb SINE Alu -5 307 3 268 169 0 34 chrX 42027543 42027602 -120572328 - FLAM SINE Alu 0 133 78 1225 178 0 5 chrX 42027602 42027821 -120572109 - AluJo SINE Alu -94 218 1 886 203 5 21 chrX 42032625 42032817 -120567113 + MER5A DNA MER1_type 1 189 0 316 266 32 0 chrX 42035823 42035917 -120564013 + MLT1E2-int LTR MaLR 1275 1371 0 2515 187 77 35 chrX 42035917 42036515 -120563415 + MLT1E2 LTR MaLR 1 623 -3 2104 106 0 38 chrX 42036759 42037079 -120562851 - AluSx SINE Alu -4 308 1 273 216 0 0 chrX 42037106 42037157 -120562773 - MIR SINE MIR -3 259 209 756 213 0 44 chrX 42037164 42037263 -120562667 + MIR SINE MIR 2 93 -169 890 152 0 0 chrX 42037263 42037395 -120562535 - FLAM_C SINE Alu 0 133 2 756 213 0 44 chrX 42037395 42037455 -120562475 + MIR SINE MIR 93 154 -108 269 220 51 0 chrX 42037457 42037516 -120562414 + MIR SINE MIR 128 189 -73 1255 220 91 7 chrX 42037565 42037874 -120562056 + MER46C DNA MER2_type 4 338 0 506 306 65 11 chrX 42037898 42038084 -120561846 - MIR SINE MIR -63 199 4 993 286 150 10 chrX 42038516 42039390 -120560540 - L2 LINE L2 -2 3311 2313 764 206 38 12 chrX 42039477 42039637 -120560293 - MIR SINE MIR -66 196 33 483 275 83 10 chrX 42039665 42039858 -120560072 - L2 LINE L2 -184 3129 2923 457 169 28 164 chrX 42040086 42040263 -120559667 + MIR SINE MIR 60 212 -50 601 85 0 43 chrX 42040494 42040588 -120559342 - FLAM_A SINE Alu -11 131 42 1202 244 92 55 chrX 42040978 42041334 -120558596 + L2 LINE L2 2804 3184 -129 2096 110 3 3 chrX 42041334 42041635 -120558295 - AluSx SINE Alu -11 301 1 1202 244 92 55 chrX 42041635 42041765 -120558165 + L2 LINE L2 3184 3308 -5 676 274 105 20 chrX 42041846 42042094 -120557836 - L2 LINE L2 0 3313 3045 857 131 0 29 chrX 42042303 42042440 -120557490 - FLAM_A SINE Alu 0 133 1 618 268 78 10 chrX 42042695 42042900 -120557030 - L2 LINE L2 -272 3041 2823 369 214 69 76 chrX 42042902 42043033 -120556897 - MIR SINE MIR -54 208 79 221 287 104 43 chrX 42043077 42043192 -120556738 - L2 LINE L2 -341 2972 2851 511 277 189 6 chrX 42043218 42043377 -120556553 + MIR SINE MIR 75 262 0 190 75 75 0 chrX 42044275 42044315 -120555615 + G-rich Low_complexity Low_complexity 6 48 0 192 179 0 0 chrX 42044692 42044731 -120555199 + (CGG)n Simple_repeat Simple_repeat 2 40 0 1550 245 41 13 chrX 42046460 42047030 -120552900 - L2 LINE L2 -1 3312 2722 262 259 118 12 chrX 42047032 42047117 -120552813 + MLT1K LTR MaLR 495 588 0 269 346 101 0 chrX 42047208 42047367 -120552563 - L2 LINE L2 -375 2939 2765 1101 211 87 0 chrX 42047473 42047738 -120552192 + L2 LINE L2 2213 2500 -814 882 172 59 11 chrX 42047802 42047988 -120551942 + L2 LINE L2 3119 3313 0 282 246 169 41 chrX 42047993 42048224 -120551706 + L1MC4a LINE L1 6714 6936 -872 2289 74 0 3 chrX 42048382 42048679 -120551251 - AluSg SINE Alu -14 296 1 2123 103 3 0 chrX 42049172 42049463 -120550467 + AluSq SINE Alu 1 292 -21 399 289 188 10 chrX 42049790 42049998 -120549932 + L2 LINE L2 2855 3099 -214 1539 99 45 9 chrX 42050017 42050239 -120549691 - MER30 DNA MER1_type 0 230 1 1099 296 72 22 chrX 42050343 42050358 -120549572 - L2 LINE L2 -9 3304 3291 1044 179 12 0 chrX 42050358 42050526 -120549404 + FAM SINE Alu 1 170 -5 1099 296 72 22 chrX 42050526 42050969 -120548961 - L2 LINE L2 -22 3291 2823 553 192 83 17 chrX 42051047 42051167 -120548763 + L2 LINE L2 3184 3311 -2 406 234 75 154 chrX 42051497 42051698 -120548232 + L2 LINE L2 3128 3312 -1 873 219 67 22 chrX 42052168 42052392 -120547538 + MIR SINE MIR 29 262 0 491 312 30 34 chrX 42052543 42052780 -120547150 - MIR SINE MIR -11 251 16 1743 168 13 10 chrX 42054280 42054645 -120545285 - AluJb SINE Alu 0 366 1 246 198 174 12 chrX 42054951 42055037 -120544893 - L1MC4 LINE L1 -2 8040 7941 1633 160 32 0 chrX 42055048 42055329 -120544601 - AluJb SINE Alu -22 290 1 513 256 31 26 chrX 42055384 42055579 -120544351 - L1ME LINE L1 -298 6634 6439 1856 147 0 10 chrX 42055585 42055878 -120544052 - AluSx SINE Alu -22 290 1 1530 185 61 27 chrX 42055974 42056304 -120543626 + MER58B DNA MER1_type 1 341 0 1316 215 34 44 chrX 42056610 42057038 -120542892 - L1ME LINE L1 -743 6214 5809 1922 161 36 34 chrX 42057040 42057162 -120542768 - L1MB7 LINE L1 0 6184 6064 1848 142 3 19 chrX 42057162 42057472 -120542458 - AluJb SINE Alu -6 306 2 1922 161 36 34 chrX 42057472 42057766 -120542164 - L1MB7 LINE L1 -120 6064 5767 4091 172 49 31 chrX 42057769 42058320 -120541610 - L1ME LINE L1 -4246 2711 2172 2014 118 20 3 chrX 42058320 42058617 -120541313 + AluSx SINE Alu 1 302 -10 4091 172 49 31 chrX 42058617 42059006 -120540924 - L1ME LINE L1 -4785 2172 1750 2088 162 93 90 chrX 42059006 42059517 -120540413 + LTR64 LTR ERVK 1 516 -42 1755 148 17 14 chrX 42059517 42059814 -120540116 + AluJb SINE Alu 1 298 -14 2088 162 93 90 chrX 42059814 42059858 -120540072 + LTR64 LTR ERVK 516 558 0 4091 172 49 31 chrX 42059858 42059888 -120540042 - L1ME LINE L1 -5207 1750 1722 660 167 33 17 chrX 42059892 42060012 -120539918 - MSTC LTR MaLR -306 122 1 251 232 14 29 chrX 42060074 42060143 -120539787 - L1ME LINE L1 -5685 1174 1107 2046 124 0 3 chrX 42060245 42060551 -120539379 - AluSx SINE Alu -7 305 1 291 104 0 0 chrX 42060562 42060610 -120539320 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 692 78 0 0 chrX 42060619 42060709 -120539221 - AluSg/x SINE Alu -44 266 177 318 243 65 65 chrX 42060825 42060932 -120538998 - L1ME LINE L1 -6594 265 159 4604 84 17 3 chrX 42060988 42061631 -120538299 - L1MA3 LINE L1 -1 6304 5653 1071 181 0 0 chrX 42061642 42061824 -120538106 - AluJb SINE Alu -6 306 125 638 28 44 60 chrX 42061824 42062006 -120537924 + (TA)n Simple_repeat Simple_repeat 2 180 0 231 65 32 0 chrX 42062007 42062038 -120537892 - AluJb SINE Alu -184 118 87 2326 111 24 0 chrX 42062038 42062417 -120537513 - L1 LINE L1 -1516 6049 5662 945 206 0 5 chrX 42062602 42062791 -120537139 + L1MB7 LINE L1 5920 6107 -77 973 92 0 21 chrX 42062808 42062949 -120536981 + AluJb SINE Alu 1 138 -174 313 115 98 0 chrX 42062951 42063012 -120536918 + AluS SINE Alu 233 299 -3 227 97 0 0 chrX 42063019 42063050 -120536880 + L1MB7 LINE L1 6109 6139 -45 8021 13 2 0 chrX 42063385 42064571 -120535359 - L1PA3 LINE L1 0 6155 4970 2527 128 3 5 chrX 42064571 42064945 -120534985 - L1 LINE L1 -1892 5673 5299 1588 95 5 3 chrX 42064947 42065307 -120534623 - L1 LINE L1 -4265 3300 2803 * 13973 124 12 0 chrX 42065304 42067247 -120532683 - L1 LINE L1 -5119 2446 480 4730 73 2 3 chrX 42067259 42067858 -120532072 - L1PA8A LINE L1 -6 6125 5528 3984 76 9 0 chrX 42067858 42068547 -120531383 + L1PA8A LINE L1 4829 5524 -607 3040 162 19 2 chrX 42068541 42069010 -120530920 - L1 LINE L1 -7073 492 16 * 424 266 41 6 chrX 42068996 42069165 -120530765 - L1M4 LINE L1 -6355 187 13 * 2172 95 0 0 chrX 42069264 42069578 -120530352 - AluSx SINE Alu 0 314 1 238 155 0 42 chrX 42069578 42069649 -120530281 - L1M LINE L1 -850 5330 5263 266 297 47 0 chrX 42069676 42069740 -120530190 - MIR SINE MIR -194 68 2 2380 102 13 58 chrX 42070077 42070089 -120529841 + THE1C LTR MaLR 1 12 -363 4206 99 27 2 chrX 42070089 42070653 -120529277 + LTR19B LTR ERV1 1 578 -2 2380 102 13 58 chrX 42070653 42071033 -120528897 + THE1C LTR MaLR 12 375 0 1008 180 0 0 chrX 42071323 42071501 -120528429 - AluJb SINE Alu -6 306 129 1551 185 10 27 chrX 42071597 42071889 -120528041 - AluJo SINE Alu -25 287 1 311 319 42 8 chrX 42072532 42072651 -120527279 - L1M4 LINE L1 -3642 2504 2382 841 236 91 0 chrX 42072724 42072932 -120526998 - MIR SINE MIR -30 232 6 * 3316 277 71 41 chrX 42072930 42073699 -120526231 - L2 LINE L2 -19 3294 2550 1755 160 0 0 chrX 42073699 42073981 -120525949 + AluJb SINE Alu 1 282 -30 3316 277 71 41 chrX 42073981 42074662 -120525268 - L2 LINE L2 -763 2550 1782 371 267 57 9 chrX 42074667 42074759 -120525171 - L1M4 LINE L1 -3783 2363 2264 1920 140 3 3 chrX 42074759 42075067 -120524863 - AluSx SINE Alu -4 308 1 371 267 57 9 chrX 42075067 42075079 -120524851 - L1M4 LINE L1 -3882 2264 2254 378 36 0 0 chrX 42075087 42075143 -120524787 - L1MB4 LINE L1 0 6180 6125 378 270 64 13 chrX 42075324 42075801 -120524129 + L1MEc LINE L1 2074 2573 -3642 381 306 44 38 chrX 42075951 42076134 -120523796 + MIR SINE MIR 20 203 -59 951 41 41 29 chrX 42076530 42076585 -120523345 + (TTTC)n Simple_repeat Simple_repeat 1 229 0 951 41 41 29 chrX 42076585 42076757 -120523173 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 302 158 0 18 chrX 42076966 42077023 -120522907 - FLAM SINE Alu 0 133 78 5228 152 26 8 chrX 42077138 42078016 -120521914 + MER54A LTR ERVL 8 901 0 1085 219 33 103 chrX 42078332 42078788 -120521142 + L1ME2 LINE L1 5709 6132 -32 2661 65 59 19 chrX 42078821 42079026 -120520904 + L1PA10 LINE L1 5781 6009 -159 270 0 0 0 chrX 42079026 42079056 -120520874 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 2661 65 59 19 chrX 42079056 42079222 -120520708 + L1PA10 LINE L1 6009 6167 -1 594 216 0 0 chrX 42079229 42079340 -120520590 + MER5A DNA MER1_type 75 185 -4 1054 230 90 70 chrX 42079984 42080220 -120519710 - L1ME2 LINE L1 -9 6155 5925 380 71 18 0 chrX 42080220 42080276 -120519654 + (CA)n Simple_repeat Simple_repeat 2 58 0 1054 230 90 70 chrX 42080276 42080321 -120519609 - L1ME2 LINE L1 -239 5925 5882 1916 133 7 18 chrX 42080321 42080606 -120519324 - AluJo SINE Alu -30 282 1 1054 230 90 70 chrX 42080606 42080780 -120519150 - L1ME2 LINE L1 -282 5882 5690 500 134 25 8 chrX 42081942 42082032 -120517898 - L1MD3 LINE L1 -156 7839 7542 2944 179 63 28 chrX 42082037 42082505 -120517425 - L1MC4a LINE L1 -288 7520 7021 2077 140 3 16 chrX 42082505 42082819 -120517111 + AluJb SINE Alu 1 310 -2 2944 179 63 28 chrX 42082819 42083003 -120516927 - L1MC4a LINE L1 -787 7021 6845 5183 188 28 20 chrX 42083007 42084072 -120515858 - L1MC3 LINE L1 -7 7778 6705 850 239 82 87 chrX 42084099 42084668 -120515262 - LTR41 LTR ERVL -1 772 120 1842 227 75 16 chrX 42084675 42085484 -120514446 - L1MC4a LINE L1 -1512 6296 5390 909 116 4 43 chrX 42085483 42085638 -120514292 - L1ME4a LINE L1 -288 5833 5679 * 2097 181 26 46 chrX 42085649 42085844 -120514086 + L1MA9 LINE L1 5795 5992 -320 2146 124 24 32 chrX 42085844 42086222 -120513708 - THE1C LTR MaLR 0 375 1 2097 181 26 46 chrX 42086222 42086524 -120513406 + L1MA9 LINE L1 5992 6282 -30 316 307 0 9 chrX 42086537 42086651 -120513279 - L1MC4a LINE L1 -2428 5380 5268 916 196 12 120 chrX 42086651 42086703 -120513227 + MER58A DNA MER1_type 1 57 -2363 2246 92 0 3 chrX 42086703 42087019 -120512911 - AluY SINE Alu 0 315 1 916 196 12 120 chrX 42087019 42087176 -120512754 + MER58A DNA MER1_type 57 183 -2237 1228 142 163 75 chrX 42087176 42087508 -120512422 - MLT1A1 LTR MaLR 0 365 5 916 196 12 120 chrX 42087508 42087546 -120512384 + MER58A DNA MER1_type 183 223 -1 322 237 101 41 chrX 42087546 42087715 -120512215 - L1 LINE L1 -871 5275 5097 2440 69 0 31 chrX 42087889 42088208 -120511722 - AluY SINE Alu -2 309 1 946 217 85 9 chrX 42088278 42088596 -120511334 + L1MC4 LINE L1 7691 8032 -10 2324 133 25 14 chrX 42088734 42089096 -120510834 - MER47A DNA MER2_type 0 366 1 2238 113 0 3 chrX 42089120 42089412 -120510518 - AluSx SINE Alu -21 291 1 325 157 121 12 chrX 42089579 42089662 -120510268 - L1M4b LINE L1 -4500 2221 2130 1456 175 108 53 chrX 42089664 42090006 -120509924 + MLT1A2 LTR MaLR 1 361 -13 365 290 100 22 chrX 42090094 42090325 -120509605 - L1M4b LINE L1 -4766 1774 1526 3980 196 34 8 chrX 42090370 42091207 -120508723 - L1ME1 LINE L1 -2 6164 5307 456 372 54 18 chrX 42091306 42091696 -120508234 + MER89-int LTR ERV1 3512 3915 -2886 2662 196 154 66 chrX 42092139 42092983 -120506947 + LTR28 LTR ERV1 1 1020 0 1381 322 56 25 chrX 42093003 42093802 -120506128 + MER89-int LTR ERV1 2141 2964 -1683 2114 150 12 18 chrX 42093958 42094299 -120505631 - MER44D DNA MER2_type 0 609 1 1981 151 7 0 chrX 42094329 42094620 -120505310 - AluJo SINE Alu -15 297 5 745 261 0 19 chrX 42096498 42096709 -120503221 + L1M4 LINE L1 2390 2596 -3550 856 127 32 0 chrX 42096714 42096840 -120503090 + AluJb SINE Alu 162 291 -21 249 61 143 0 chrX 42096841 42096890 -120503040 + LTR64 LTR ERVK 503 558 0 252 0 0 0 chrX 42096890 42096920 -120503010 - L1M4b LINE L1 -5206 1334 1305 657 167 33 17 chrX 42096924 42097044 -120502886 - MSTC LTR MaLR -306 122 1 265 217 14 29 chrX 42097106 42097175 -120502755 - L1M4b LINE L1 -5685 757 690 2286 97 0 10 chrX 42097279 42097587 -120502343 - AluSg1 SINE Alu -4 305 1 401 346 21 17 chrX 42098502 42098742 -120501188 - PRIMA41-int LTR ERV1 -2899 4857 4617 198 103 0 0 chrX 42100803 42100832 -120499098 + (T)n Simple_repeat Simple_repeat 1 29 0 1337 167 35 125 chrX 42102147 42102572 -120497358 - PRIMA41-int LTR ERV1 -5183 1148 762 1720 185 11 3 chrX 42102575 42102862 -120497068 + AluJb SINE Alu 6 294 -18 1084 338 26 24 chrX 42102944 42103411 -120496519 - L1M4b LINE L1 -5183 1278 811 4512 145 32 101 chrX 42103444 42103891 -120496039 - L1M4c LINE L1 -5489 895 474 525 104 0 0 chrX 42103891 42103989 -120495941 - AluSg/x SINE Alu 0 309 212 4512 145 32 101 chrX 42103989 42104419 -120495511 - L1M4c LINE L1 -5910 474 16 1613 174 65 0 chrX 42104428 42104703 -120495227 - AluJo SINE Alu -19 293 1 311 188 12 50 chrX 42104704 42104784 -120495146 + L1M4 LINE L1 4845 4921 -1225 * 1735 92 17 8 chrX 42104779 42105038 -120494892 + L1PA10 LINE L1 5907 6167 0 941 201 15 57 chrX 42105038 42105302 -120494628 + L1M4 LINE L1 4907 5159 -987 188 283 0 17 chrX 42105624 42105684 -120494246 - L2 LINE L2 -225 3047 2989 1928 149 7 3 chrX 42106131 42106432 -120493498 - AluJo SINE Alu -10 302 1 431 220 22 0 chrX 42106648 42106739 -120493191 - L1M4b LINE L1 -5961 581 489 3305 77 4 13 chrX 42106854 42107309 -120492621 + LTR19B LTR ERV1 1 451 -129 12398 94 8 0 chrX 42107312 42109793 -120490137 + L1PA8 LINE L1 3679 6168 -4 201 162 0 0 chrX 42109922 42109959 -120489971 + A-rich Low_complexity Low_complexity 2 38 0 1002 107 0 0 chrX 42109959 42110099 -120489831 + LTR19A LTR ERV1 347 486 0 350 250 150 25 chrX 42110445 42110565 -120489365 - L2 LINE L2 -22 3250 3116 492 268 80 35 chrX 42110749 42111149 -120488781 - L1M4 LINE L1 -3578 2568 2151 2167 104 0 55 chrX 42111239 42111566 -120488364 - AluSx SINE Alu -3 309 1 1052 98 0 20 chrX 42111598 42111751 -120488179 - L1PA10 LINE L1 -1 6167 6018 23 0 0 0 chrX 42112034 42112057 -120487873 + AT_rich Low_complexity Low_complexity 1 23 0 1023 120 0 0 chrX 42113555 42113699 -120486231 + FRAM SINE Alu 1 144 -382 2471 46 0 0 chrX 42113699 42113984 -120485946 + AluY SINE Alu 1 285 -26 1023 120 0 0 chrX 42113984 42114062 -120485868 + FRAM SINE Alu 143 390 0 1352 156 5 5 chrX 42114152 42114376 -120485554 + L1PA15 LINE L1 5942 6165 0 1222 117 0 124 chrX 42115229 42115478 -120484452 - AluJo SINE Alu -26 286 69 297 253 25 0 chrX 42115835 42115914 -120484016 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 237 267 0 0 chrX 42117361 42117421 -120482509 + (CCCA)n Simple_repeat Simple_repeat 2 61 0 279 269 0 0 chrX 42117456 42117564 -120482366 + (CCCA)n Simple_repeat Simple_repeat 2 109 0 201 354 6 12 chrX 42118835 42118996 -120480934 + CT-rich Low_complexity Low_complexity 4 163 0 206 268 0 65 chrX 42119284 42119407 -120480523 + C-rich Low_complexity Low_complexity 2 116 0 2739 42 0 0 chrX 42120204 42120515 -120479415 - AluY SINE Alu 0 311 1 2215 97 27 0 chrX 42121231 42121529 -120478401 - AluSx SINE Alu -6 306 1 473 310 112 52 chrX 42121535 42122268 -120477662 - L1M4 LINE L1 -2700 3446 2670 2285 122 0 0 chrX 42122467 42122771 -120477159 - AluSx SINE Alu -8 304 1 1497 121 27 5 chrX 42123360 42123584 -120476346 + MER30 DNA MER1_type 2 230 0 1866 222 156 30 chrX 42123587 42124114 -120475816 + MLT1E LTR MaLR 1 593 0 241 250 45 23 chrX 42124159 42124247 -120475683 - HAL1b LINE L1 -923 425 336 275 248 57 0 chrX 42124766 42124871 -120475059 - MIR SINE MIR -60 148 38 625 283 43 75 chrX 42125100 42125630 -120474300 - L1ME4a LINE L1 -3 6118 5606 2074 128 3 3 chrX 42125647 42125953 -120473977 + AluSx SINE Alu 1 306 -6 1247 134 26 125 chrX 42125956 42126319 -120473611 + AluSx SINE Alu 2 333 0 1158 110 0 0 chrX 42126953 42127107 -120472823 - AluSg/x SINE Alu -25 287 134 2192 123 0 3 chrX 42127107 42127416 -120472514 - AluSx SINE Alu -4 308 1 426 242 21 0 chrX 42127455 42127550 -120472380 + MER94 DNA DNA 4 100 -34 1003 198 16 5 chrX 42127607 42127794 -120472136 + MER5A DNA MER1_type 1 189 0 189 94 0 0 chrX 42128259 42128291 -120471639 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1809 129 0 22 chrX 42128301 42128579 -120471351 - AluSx SINE Alu -40 272 1 185 65 32 0 chrX 42128674 42128705 -120471225 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 2190 103 0 27 chrX 42128880 42129180 -120470750 - AluSx SINE Alu -12 300 9 2951 193 14 52 chrX 42129249 42129825 -120470105 - MLT2B3 LTR ERVL 0 554 1 920 221 21 113 chrX 42129893 42130219 -120469711 + MLT1E-int LTR MaLR 1076 1371 0 2178 203 29 108 chrX 42130257 42130843 -120469087 + MLT1E LTR MaLR 52 591 -2 3830 24 0 0 chrX 42132250 42132665 -120467265 - L1PA4 LINE L1 -8 6147 5733 1818 19 0 0 chrX 42132665 42132870 -120467060 + L1P LINE L1 1671 1875 -4271 468 209 147 8 chrX 42132970 42133099 -120466831 - L1MB7 LINE L1 -31 6153 6007 4124 47 2 0 chrX 42133100 42133571 -120466359 + L1PA7 LINE L1 5682 6153 -1 37 0 0 0 chrX 42133571 42133608 -120466322 + AT_rich Low_complexity Low_complexity 1 37 0 298 274 43 74 chrX 42133616 42133762 -120466168 - L1M4 LINE L1 -2310 3836 3698 1767 104 108 32 chrX 42133762 42133898 -120466032 - AluSx SINE Alu -13 299 175 2388 77 0 7 chrX 42133898 42134196 -120465734 - AluY SINE Alu -15 296 1 1767 104 108 32 chrX 42134196 42134337 -120465593 - AluSx SINE Alu -137 175 1 298 274 43 74 chrX 42134337 42134420 -120465510 - L1M4 LINE L1 -2448 3698 3614 313 296 0 0 chrX 42134516 42134631 -120465299 - L1M4 LINE L1 -2674 3472 3358 190 274 16 16 chrX 42134641 42134703 -120465227 + L2 LINE L2 1920 1981 -1333 2507 47 7 3 chrX 42134719 42135016 -120464914 - AluY SINE Alu -13 298 1 1686 141 16 1 chrX 42135171 42135448 -120464482 - L1MB7 LINE L1 -176 6008 5725 2316 164 13 8 chrX 42135477 42135860 -120464070 - MSTB1 LTR MaLR -47 385 1 1684 149 55 26 chrX 42135860 42136037 -120463893 - MSTB1-int LTR MaLR 0 1651 1460 2460 81 0 0 chrX 42136037 42136347 -120463583 + AluSx SINE Alu 1 310 -2 1684 149 55 26 chrX 42136347 42136478 -120463452 - MSTB1-int LTR MaLR -191 1460 1334 767 229 7 0 chrX 42136503 42136647 -120463283 - FRAM SINE Alu -30 146 2 21 0 0 0 chrX 42136717 42136738 -120463192 + AT_rich Low_complexity Low_complexity 1 21 0 1053 185 6 29 chrX 42137547 42137720 -120462210 + FAM SINE Alu 1 169 -6 878 139 7 0 chrX 42138543 42138680 -120461250 - FLAM_C SINE Alu -5 138 1 439 235 48 7 chrX 42139812 42139946 -120459984 - MLT1H LTR MaLR -236 205 34 340 358 11 32 chrX 42140127 42140314 -120459616 + L1 LINE L1 4665 4847 -1299 804 150 0 0 chrX 42140360 42140480 -120459450 + AluSq/x SINE Alu 1 120 -192 23 0 0 0 chrX 42140480 42140503 -120459427 + AT_rich Low_complexity Low_complexity 1 23 0 250 234 0 31 chrX 42140532 42140596 -120459334 + L1 LINE L1 4924 4985 -1161 514 219 19 52 chrX 42140689 42140844 -120459086 + MER90 LTR ERV1 6 155 -420 304 214 83 12 chrX 42141159 42141243 -120458687 + MIR SINE MIR 160 249 -13 1847 162 0 26 chrX 42141269 42141572 -120458358 - AluJb SINE Alu -12 300 6 277 322 78 24 chrX 42142247 42142502 -120457428 - L1M4 LINE L1 -2000 4146 3878 540 208 20 0 chrX 42142509 42142610 -120457320 - HERV16 LTR ERVL -3158 1838 1736 1520 266 71 33 chrX 42142817 42143363 -120456567 - HERV16 LTR ERVL -3819 1177 611 2092 216 81 18 chrX 42143364 42143868 -120456062 + MLT1F LTR MaLR 1 536 -6 1319 254 33 15 chrX 42143874 42144209 -120455721 - HERV16 LTR ERVL -4382 614 274 699 310 10 5 chrX 42144243 42144446 -120455484 - HERV16 LTR ERVL -4791 205 2 1403 244 114 8 chrX 42144447 42144832 -120455098 - LTR16A LTR ERVL 0 450 25 907 243 0 6 chrX 42145284 42145461 -120454469 + MER41D LTR ERV1 382 557 0 617 219 0 17 chrX 42145849 42145968 -120453962 - LTR28 LTR ERV1 0 1020 904 915 214 249 49 chrX 42145969 42146338 -120453592 - LTR28 LTR ERV1 -270 750 308 711 159 194 3 chrX 42146347 42146486 -120453444 - LTR28 LTR ERV1 -600 678 1 229 321 37 30 chrX 42146775 42146909 -120453021 - MER87 LTR ERV1 0 541 407 207 0 0 0 chrX 42147325 42147348 -120452582 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 242 206 59 15 chrX 42147398 42147466 -120452464 + LTR58 LTR ERV1 350 420 -259 311 279 54 102 chrX 42147827 42147974 -120451956 - L1MDa LINE L1 -5586 954 815 436 270 72 78 chrX 42148231 42148590 -120451340 - L1MDa LINE L1 -5840 700 344 1919 132 3 21 chrX 42148776 42149063 -120450867 - AluJo SINE Alu -17 295 14 1763 223 31 13 chrX 42149374 42149765 -120450165 + MER90 LTR ERV1 217 614 0 2803 142 31 10 chrX 42150882 42151299 -120448631 - MSTB LTR MaLR 0 426 1 189 107 0 0 chrX 42151660 42151688 -120448242 + (TAA)n Simple_repeat Simple_repeat 1 28 0 258 32 0 0 chrX 42151745 42151776 -120448154 + (CA)n Simple_repeat Simple_repeat 2 32 0 792 200 114 11 chrX 42151896 42152071 -120447859 - L1MD2 LINE L1 -270 6089 5897 350 224 19 19 chrX 42152068 42152175 -120447755 - L1M4 LINE L1 -2193 3953 3847 * 270 290 31 4 chrX 42152177 42152309 -120447621 + MIR SINE MIR 42 231 -31 1402 264 33 41 chrX 42152404 42152917 -120447013 - MLT1H LTR MaLR -4 545 3 1473 265 20 47 chrX 42152920 42153456 -120446474 + HAL1 LINE L1 1978 2499 -8 2335 101 0 3 chrX 42153502 42153800 -120446130 + AluSx SINE Alu 1 297 -15 2331 80 0 13 chrX 42153917 42154216 -120445714 + AluSc SINE Alu 1 295 -14 469 285 105 52 chrX 42154323 42154679 -120445251 + L1ME4a LINE L1 5410 5800 -321 2398 101 0 0 chrX 42154679 42154976 -120444954 + AluSx SINE Alu 1 297 -15 469 285 105 52 chrX 42154976 42155103 -120444827 + L1ME4a LINE L1 5800 5919 -202 278 292 62 21 chrX 42155423 42155567 -120444363 - L1M4 LINE L1 -3104 3042 2893 25 0 0 0 chrX 42155596 42155621 -120444309 + AT_rich Low_complexity Low_complexity 1 25 0 1839 209 128 22 chrX 42155634 42156149 -120443781 - MLT1F1 LTR MaLR 0 567 1 25 0 0 0 chrX 42156815 42156840 -120443090 + AT_rich Low_complexity Low_complexity 1 25 0 7257 70 18 4 chrX 42156846 42157822 -120442108 - L1PA13 LINE L1 -11 6152 5172 2067 168 10 5 chrX 42157822 42158210 -120441720 + L1 LINE L1 4384 4773 -1373 * 8329 228 37 11 chrX 42158208 42158814 -120441116 - L1MCb LINE L1 -1581 5360 4772 2549 67 0 0 chrX 42158814 42159113 -120440817 - AluSp SINE Alu -14 299 1 8329 228 37 11 chrX 42159113 42160939 -120438991 - L1MCb LINE L1 -2169 4772 2810 2272 102 0 7 chrX 42160939 42161233 -120438697 - AluSq SINE Alu -21 292 1 8329 228 37 11 chrX 42161233 42161273 -120438657 - L1MCb LINE L1 -4131 2810 2773 2252 152 22 8 chrX 42161274 42161675 -120438255 + MER95 LTR ERV 1 407 -24 547 214 28 41 chrX 42161676 42161896 -120438034 - L1MCb LINE L1 -4223 2753 2412 1398 98 69 0 chrX 42161896 42162099 -120437831 - L1PA16 LINE L1 -7 6159 5943 547 214 28 41 chrX 42162099 42162177 -120437753 - L1MCb LINE L1 -4564 2412 2334 * 7429 169 65 24 chrX 42162175 42163552 -120436378 + L1PA12 LINE L1 10 1442 -6139 2519 199 2 0 chrX 42163633 42164145 -120435785 + L1P LINE L1 2616 3128 -3018 6787 88 3 5 chrX 42164145 42165370 -120434560 + L1PA14 LINE L1 4924 6160 -1 1916 247 64 10 chrX 42165370 42166058 -120433872 - L1MCb LINE L1 -4597 2344 1536 668 273 115 51 chrX 42166049 42166441 -120433489 - L1MCb LINE L1 -5702 720 3 * 277 253 13 0 chrX 42167338 42167413 -120432517 - MIR SINE MIR -8 254 179 385 256 8 30 chrX 42167464 42167597 -120432333 - L1 LINE L1 -1092 5054 4925 1607 186 38 78 chrX 42167634 42168031 -120431899 + MLT1C LTR MaLR 80 460 -7 283 297 70 41 chrX 42168095 42168317 -120431613 - L1 LINE L1 -1285 4861 4629 356 291 93 29 chrX 42168412 42168606 -120431324 + MLT1H LTR MaLR 3 252 -297 3019 128 36 16 chrX 42169136 42169228 -120430702 + L1MA4 LINE L1 5795 5884 -416 2232 132 0 0 chrX 42169228 42169531 -120430399 + AluSx SINE Alu 1 303 -9 3019 128 36 16 chrX 42169531 42169932 -120429998 + L1MA4 LINE L1 5884 6298 -2 895 262 56 77 chrX 42170461 42170926 -120429004 - LTR16A1 LTR ERVL -2 455 1 333 0 0 0 chrX 42171312 42171349 -120428581 + (TG)n Simple_repeat Simple_repeat 1 37 0 3078 110 16 12 chrX 42171471 42171897 -120428033 - MSTA LTR MaLR 0 428 1 186 43 0 0 chrX 42173357 42173380 -120426550 + (ATG)n Simple_repeat Simple_repeat 2 24 0 609 234 25 98 chrX 42173396 42173631 -120426299 - MIR SINE MIR -11 251 34 3908 106 11 30 chrX 42173799 42174336 -120425594 - MER1A DNA MER1_type 0 527 1 402 154 0 0 chrX 42174584 42174662 -120425268 + (CA)n Simple_repeat Simple_repeat 1 78 0 313 263 60 23 chrX 42175451 42175584 -120424346 + L1MC4a LINE L1 6057 6194 -1614 23 33 0 0 chrX 42175956 42175986 -120423944 + AT_rich Low_complexity Low_complexity 1 30 0 15178 49 0 9 chrX 42175989 42177847 -120422083 + L1P LINE L1 1 1842 -4304 * 43706 33 21 1 chrX 42177845 42183871 -120416059 - L1PA2 LINE L1 -1 6154 3 21860 25 0 0 chrX 42183870 42186415 -120413515 + L1P LINE L1 1833 4377 -1769 * 728 168 4 16 chrX 42186406 42186552 -120413378 + L1MC5 LINE L1 7100 7243 -733 * 901 249 62 21 chrX 42186679 42186968 -120412962 + L1MC5 LINE L1 7270 7570 -391 1011 158 6 18 chrX 42187007 42187178 -120412752 - AluJb SINE Alu -7 305 137 5052 166 84 19 chrX 42187179 42188070 -120411860 + L1MD2 LINE L1 4848 5680 -679 251 27 0 27 chrX 42188070 42188107 -120411823 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 5052 166 84 19 chrX 42188107 42188174 -120411756 + L1MD2 LINE L1 5680 5741 -618 2165 153 37 3 chrX 42188174 42188528 -120411402 - MER47A DNA MER2_type 0 366 1 5052 166 84 19 chrX 42188528 42188823 -120411107 + L1MD2 LINE L1 5741 6215 -144 2084 138 67 59 chrX 42188869 42189153 -120410777 + MSTD LTR MaLR 1 290 -106 2280 123 0 0 chrX 42189153 42189463 -120410467 - AluSq SINE Alu -3 310 1 2084 138 67 59 chrX 42189463 42189569 -120410361 + MSTD LTR MaLR 290 394 -2 491 189 161 96 chrX 42189571 42189831 -120410099 + L1MC5 LINE L1 7609 7885 -76 2013 169 33 19 chrX 42190037 42190397 -120409533 + MLT1A1 LTR MaLR 1 365 0 877 172 14 0 chrX 42190607 42190752 -120409178 + MER58B DNA MER1_type 195 341 0 3421 150 16 2 chrX 42190782 42191296 -120408634 + Tigger7 DNA MER2_type 1 521 -212 563 178 0 0 chrX 42191295 42191385 -120408545 + Tigger7 DNA MER2_type 2396 2485 -2 * 1230 177 10 0 chrX 42191433 42191636 -120408294 - MER70B LTR ERVL -361 217 13 3161 165 4 0 chrX 42191949 42192416 -120407514 + MER70A LTR ERVL 1 469 -3 298 217 0 0 chrX 42192984 42193044 -120406886 - LOR1-int LTR ERV1 -251 7505 7446 278 333 53 53 chrX 42193018 42193189 -120406741 - LOR1-int LTR ERV1 -253 6869 6699 * 428 178 14 0 chrX 42193260 42193333 -120406597 - MER49 LTR ERV1 -163 760 687 857 164 88 6 chrX 42193350 42193509 -120406421 - LOR1-int LTR ERV1 -181 6150 5979 12843 152 55 59 chrX 42193704 42196390 -120403540 - LOR1-int LTR ERV1 -514 5432 2758 2542 162 24 22 chrX 42196425 42196888 -120403042 - LOR1-int LTR ERV1 -2594 2286 1823 250 259 0 17 chrX 42196888 42196946 -120402984 - tRNA-Gly-GGG tRNA tRNA -10 64 8 641 190 58 8 chrX 42196948 42197069 -120402861 - LOR1-int LTR ERV1 -3120 1760 1634 * 647 136 31 14 chrX 42197058 42197251 -120402679 - LOR1-int LTR ERV1 -2530 4068 1701 253 27 0 0 chrX 42197282 42197319 -120402611 - MER41A LTR ERV1 -87 467 431 213 39 0 0 chrX 42198639 42198665 -120401265 + (TCC)n Simple_repeat Simple_repeat 1 26 0 511 233 127 20 chrX 42199800 42199950 -120399980 - MIR3 SINE MIR -22 186 21 198 0 0 0 chrX 42201507 42201529 -120398401 + (A)n Simple_repeat Simple_repeat 1 22 0 469 172 10 20 chrX 42202891 42202989 -120396941 - MER41B LTR ERV1 -107 528 432 2185 145 33 8 chrX 42202989 42203355 -120396575 - THE1C LTR MaLR 0 375 1 * 3079 111 2 2 chrX 42203355 42203791 -120396139 - MER41B LTR ERV1 -199 436 1 5893 116 17 17 chrX 42203793 42204693 -120395237 - MER41B-int LTR ERV1 -3 5943 5044 293 53 0 0 chrX 42204679 42204717 -120395213 - MER41B-int LTR ERV1 -1724 4222 4185 * 225 0 0 0 chrX 42204718 42204743 -120395187 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 9422 125 58 30 chrX 42204743 42206635 -120393295 - MER41B-int LTR ERV1 -2045 5005 2535 3016 98 26 32 chrX 42206610 42207071 -120392859 - MER41B-int LTR ERV1 -4157 1789 1332 * 4847 114 18 31 chrX 42207055 42207150 -120392780 - MER41B-int LTR ERV1 -5243 703 608 2229 81 14 7 chrX 42207150 42207445 -120392485 + AluSc SINE Alu 1 297 -12 4847 114 18 31 chrX 42207445 42208061 -120391869 - MER41B-int LTR ERV1 -5338 608 1 1027 93 33 0 chrX 42208061 42208211 -120391719 - MER41B LTR ERV1 0 554 400 3243 152 89 44 chrX 42208212 42208957 -120390973 - LTR36-int LTR ERV1 -6482 1638 861 859 240 26 30 chrX 42209029 42209262 -120390668 - LTR36-int LTR ERV1 -2723 1562 1331 621 283 7 87 chrX 42209590 42209876 -120390054 - LTR36-int LTR ERV1 -1422 364 102 1548 207 220 29 chrX 42209932 42210445 -120389485 - LTR36 LTR ERV1 0 611 1 3574 128 129 38 chrX 42210449 42211040 -120388890 + LTR8A LTR ERV1 1 661 -66 2280 81 0 17 chrX 42211040 42211336 -120388594 - AluSc SINE Alu -18 291 1 3574 128 129 38 chrX 42211336 42211410 -120388520 + LTR8A LTR ERV1 661 727 0 644 111 30 0 chrX 42211410 42211509 -120388421 + L1MB2 LINE L1 6068 6169 -2 718 196 60 91 chrX 42211551 42211750 -120388180 - LTR43 LTR ERV1 -287 315 123 445 110 24 0 chrX 42211892 42211974 -120387956 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 595 298 76 41 chrX 42212008 42212106 -120387824 + L1M4 LINE L1 3722 3815 -2331 2656 166 140 17 chrX 42212106 42212642 -120387288 - LTR43 LTR ERV1 0 602 1 595 298 76 41 chrX 42212642 42213029 -120386901 + L1M4 LINE L1 3815 4224 -1922 1526 264 133 59 chrX 42213126 42213788 -120386142 + MER50 LTR ERV1 1 711 -23 191 295 49 0 chrX 42214308 42214369 -120385561 + L2 LINE L2 2992 3055 -217 2397 128 22 33 chrX 42214603 42214971 -120384959 + THE1B LTR MaLR 1 364 0 500 204 43 66 chrX 42215077 42215288 -120384642 + L1MC5 LINE L1 7696 7901 -60 1003 304 85 39 chrX 42215351 42215479 -120384451 + L1MB8 LINE L1 2328 2449 -3729 237 65 0 0 chrX 42215479 42215510 -120384420 + (TG)n Simple_repeat Simple_repeat 2 32 0 1003 304 85 39 chrX 42215510 42216608 -120383322 + L1MB8 LINE L1 2449 5848 -330 299 253 0 0 chrX 42216874 42216949 -120382981 - L1ME3 LINE L1 -9 6153 6079 * 6951 183 117 96 chrX 42216948 42218444 -120381486 + L1MCa LINE L1 19 1481 -4945 2636 136 56 10 chrX 42218444 42218857 -120381073 - MSTB1 LTR MaLR 0 432 1 6951 183 117 96 chrX 42218857 42219713 -120380217 + L1MCa LINE L1 1481 2431 -3995 2470 100 21 32 chrX 42219713 42220092 -120379838 - THE1C LTR MaLR 0 375 1 6951 183 117 96 chrX 42220092 42220258 -120379672 + L1MCa LINE L1 2431 2592 -3834 22 94 0 0 chrX 42220336 42220400 -120379530 + AT_rich Low_complexity Low_complexity 1 64 0 933 255 23 6 chrX 42220478 42220746 -120379184 + L1MD2 LINE L1 5313 5592 -655 1278 265 69 56 chrX 42221124 42221239 -120378691 + L1MC4 LINE L1 7094 7206 -836 2851 171 51 6 chrX 42221239 42221730 -120378200 - LTR44 LTR ERV1 -4 515 3 1278 265 69 56 chrX 42221730 42222298 -120377632 + L1MC4 LINE L1 7206 7786 -256 412 191 11 14 chrX 42222303 42222394 -120377536 + L1MD2 LINE L1 6028 6132 -55 868 201 0 0 chrX 42222396 42222550 -120377380 + FRAM SINE Alu 2 155 -21 2167 114 0 7 chrX 42222557 42222854 -120377076 + AluSx SINE Alu 1 295 -17 233 258 0 0 chrX 42222949 42223011 -120376919 + L1MC4 LINE L1 7768 7829 -213 1838 196 16 16 chrX 42223011 42223470 -120376460 - MER89 LTR ERV1 -1 558 1 863 137 0 0 chrX 42223785 42223902 -120376028 + FLAM_C SINE Alu 1 117 -16 558 0 0 0 chrX 42223907 42223969 -120375961 + (TG)n Simple_repeat Simple_repeat 2 63 0 420 230 44 7 chrX 42224150 42224285 -120375645 + L1MC4 LINE L1 7903 8042 0 3413 77 21 10 chrX 42224660 42225140 -120374790 + L1MA1 LINE L1 5660 6144 -158 2400 77 0 0 chrX 42225146 42225433 -120374497 - AluSg1 SINE Alu -22 287 1 24 0 0 0 chrX 42225433 42225457 -120374473 + AT_rich Low_complexity Low_complexity 1 24 0 300 270 20 60 chrX 42225562 42225662 -120374268 + L2 LINE L2 3173 3268 -45 3656 61 30 2 chrX 42226266 42226707 -120373223 - MLT2A2 LTR ERVL 0 453 1 373 123 18 0 chrX 42226769 42226826 -120373104 + AluJ/FRAM SINE Alu 228 285 -17 207 0 0 0 chrX 42226826 42226849 -120373081 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 2017 130 0 26 chrX 42227060 42227368 -120372562 - AluJo SINE Alu -12 300 1 1173 239 52 38 chrX 42227476 42227553 -120372377 - L1ME LINE L1 -390 6166 6092 2841 108 60 34 chrX 42227553 42227744 -120372186 + MSTC LTR MaLR 1 185 -243 1814 79 146 0 chrX 42227744 42227997 -120371933 + AluSg SINE Alu 1 290 -20 2841 108 60 34 chrX 42227997 42228220 -120371710 + MSTC LTR MaLR 185 426 -2 1173 239 52 38 chrX 42228220 42228565 -120371365 - L1ME LINE L1 -464 6092 5738 1899 215 39 23 chrX 42228775 42229165 -120370765 + MSTD LTR MaLR 1 396 0 3292 154 76 7 chrX 42229202 42229820 -120370110 + LTR65 LTR ERV1 9 669 0 258 308 94 43 chrX 42229938 42230055 -120369875 - L2 LINE L2 -173 3099 2977 226 276 148 20 chrX 42231368 42231564 -120368366 - L1M4 LINE L1 -3246 2900 2680 5852 224 47 39 chrX 42231684 42232961 -120366969 - L1ME LINE L1 -1139 5401 4135 1892 162 7 0 chrX 42232961 42233258 -120366672 - AluJb SINE Alu -13 299 1 5852 224 47 39 chrX 42233258 42233514 -120366416 - L1ME LINE L1 -2405 4135 3882 2366 118 16 25 chrX 42233514 42233878 -120366052 + MER46B DNA MER2_type 1 236 0 5852 224 47 39 chrX 42233878 42233998 -120365932 - L1ME LINE L1 -2658 3882 3764 1631 104 45 0 chrX 42233998 42234218 -120365712 - MER30 DNA MER1_type 0 230 1 5852 224 47 39 chrX 42234218 42234305 -120365625 - L1ME LINE L1 -2776 3764 3646 2576 60 0 13 chrX 42234666 42234980 -120364950 - AluSp SINE Alu -2 311 2 2255 205 74 9 chrX 42235877 42236458 -120363472 - L1ME LINE L1 -2869 3671 3053 777 217 48 73 chrX 42236442 42236746 -120363184 - L1MDb LINE L1 -6152 388 105 * 2163 116 6 10 chrX 42236786 42237097 -120362833 - AluSx SINE Alu 0 312 3 180 111 0 0 chrX 42237261 42237288 -120362642 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 1205 172 18 7 chrX 42237295 42237537 -120362393 - L1MB8 LINE L1 -302 5819 5630 265 152 0 0 chrX 42237543 42237589 -120362341 - L1MB8 LINE L1 -745 5433 5388 297 0 0 0 chrX 42237606 42237639 -120362291 + (CA)n Simple_repeat Simple_repeat 2 34 0 369 302 60 54 chrX 42237646 42237698 -120362232 - L1M4 LINE L1 -2888 3258 3208 1936 160 0 7 chrX 42237698 42237998 -120361932 - AluJb SINE Alu -14 298 1 369 302 60 54 chrX 42237998 42238243 -120361687 - L1M4 LINE L1 -2938 3208 2959 4255 164 9 40 chrX 42238325 42239132 -120360798 - L1MB8 LINE L1 -9 6169 5388 202 150 0 25 chrX 42239319 42239359 -120360571 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 301 351 126 14 chrX 42239912 42240134 -120359796 - MIR SINE MIR -10 252 6 906 249 118 6 chrX 42240948 42241277 -120358653 - HAL1 LINE L1 -212 2295 1930 441 252 43 26 chrX 42241287 42241402 -120358528 - MIR SINE MIR -1 261 145 1093 128 0 0 chrX 42241402 42241551 -120358379 - FRAM SINE Alu -26 150 2 342 252 77 17 chrX 42241551 42241655 -120358275 - MIR SINE MIR -62 146 58 1154 221 76 7 chrX 42241671 42241947 -120357983 - HAL1 LINE L1 -580 1927 1633 260 259 0 25 chrX 42242009 42242090 -120357840 - HAL1 LINE L1 -857 1650 1572 2507 57 0 3 chrX 42242092 42242388 -120357542 - AluY SINE Alu -16 295 1 381 277 107 22 chrX 42242464 42242735 -120357195 - HAL1 LINE L1 -1253 1254 961 1583 110 48 13 chrX 42242809 42243036 -120356894 + MER46A DNA MER2_type 1 235 -1 22 70 0 0 chrX 42243200 42243243 -120356687 + AT_rich Low_complexity Low_complexity 1 43 0 386 263 61 0 chrX 42243261 42243360 -120356570 - L1ME LINE L1 -450 5720 5616 275 239 0 28 chrX 42243376 42243447 -120356483 - L1ME3A LINE L1 -8 6162 6094 2433 95 0 13 chrX 42243559 42243876 -120356054 + AluSq SINE Alu 1 313 0 1267 234 107 31 chrX 42243880 42244404 -120355526 + L1M3 LINE L1 5203 5766 -402 852 182 8 0 chrX 42244404 42244536 -120355394 + FLAM_C SINE Alu 1 133 0 1267 234 107 31 chrX 42244536 42244548 -120355382 + L1M3 LINE L1 5766 5776 -392 340 225 27 28 chrX 42244562 42244684 -120355246 + L1ME3A LINE L1 5847 5967 -195 235 254 70 90 chrX 42244740 42244941 -120354989 + L1ME3A LINE L1 5966 6162 -8 405 58 0 0 chrX 42245057 42245109 -120354821 + (CA)n Simple_repeat Simple_repeat 1 52 0 1356 279 27 43 chrX 42245146 42245774 -120354156 - L1MC4a LINE L1 -1894 5914 5297 15248 104 23 74 chrX 42246160 42247352 -120352578 - Tigger1 DNA MER2_type 0 2418 1167 2475 63 0 17 chrX 42247352 42247653 -120352277 - AluSc SINE Alu -13 296 1 15248 104 23 74 chrX 42247653 42247716 -120352214 - Tigger1 DNA MER2_type -1251 1167 1102 1780 173 10 13 chrX 42247716 42248023 -120351907 - AluJo SINE Alu -6 306 1 15248 104 23 74 chrX 42248023 42248987 -120350943 - Tigger1 DNA MER2_type -1316 1102 341 2351 75 0 3 chrX 42248987 42249279 -120350651 + AluSg1 SINE Alu 1 291 -18 15248 104 23 74 chrX 42249279 42249603 -120350327 - Tigger1 DNA MER2_type -2077 341 2 21 0 0 0 chrX 42249824 42249845 -120350085 + AT_rich Low_complexity Low_complexity 1 21 0 2298 125 0 0 chrX 42249940 42250252 -120349678 + AluSx SINE Alu 1 312 0 2069 97 30 34 chrX 42250836 42251134 -120348796 + AluSx SINE Alu 1 297 -15 279 279 237 5 chrX 42251698 42251913 -120348017 + L2 LINE L2 1477 1741 -1573 387 260 46 66 chrX 42252675 42252871 -120347059 - L1M4 LINE L1 -3715 2431 2240 2476 74 3 7 chrX 42252982 42253292 -120346638 + AluSp SINE Alu 1 309 -4 35 41 0 0 chrX 42253339 42253388 -120346542 + AT_rich Low_complexity Low_complexity 1 49 0 227 121 0 0 chrX 42253744 42253777 -120346153 - L1MC5 LINE L1 -389 7572 7540 1657 184 110 11 chrX 42253791 42254154 -120345776 - LTR40b LTR ERVL 0 462 64 323 191 155 48 chrX 42254154 42254238 -120345692 + MER21B LTR ERV1 1 93 -770 1279 193 94 33 chrX 42254257 42254352 -120345578 + MER21B LTR ERV1 19 107 -756 1855 72 0 25 chrX 42254352 42254588 -120345342 - AluY SINE Alu -15 296 67 1279 193 94 33 chrX 42254588 42254767 -120345163 + MER21B LTR ERV1 107 310 -553 499 186 78 10 chrX 42254776 42254878 -120345052 + MER21B LTR ERV1 564 672 -191 614 214 17 0 chrX 42254912 42255029 -120344901 + MER21B LTR ERV1 312 430 -433 411 225 22 0 chrX 42255063 42255152 -120344778 + MER21B LTR ERV1 19 109 -754 1544 185 133 5 chrX 42255153 42255536 -120344394 + MER21B LTR ERV1 431 862 -1 398 179 0 0 chrX 42255543 42255610 -120344320 - LTR40a LTR ERVL -449 70 4 911 195 50 106 chrX 42255612 42255894 -120344036 - HERVL40 LTR ERVL -3 5527 5262 735 302 71 44 chrX 42255854 42256264 -120343666 - MER89-int LTR ERV1 -298 6503 6083 * 2256 78 33 16 chrX 42256419 42256725 -120343205 + AluSq SINE Alu 1 311 -2 1780 237 89 18 chrX 42256873 42257387 -120342543 - MER92C LTR ERV1 -3 551 1 862 329 19 22 chrX 42257675 42258085 -120341845 - MER92C-int LTR ERV1 -248 6553 6145 9147 239 53 20 chrX 42258095 42260294 -120339636 - HERVL40 LTR ERVL -1284 4246 1977 614 232 29 0 chrX 42260301 42260439 -120339491 - LTR40b LTR ERVL -15 447 306 2768 164 69 78 chrX 42260448 42260963 -120338967 - MER67C LTR ERV1 0 710 202 3778 76 13 4 chrX 42260963 42261438 -120338492 + L1PA10 LINE L1 5680 6158 -10 2768 164 69 78 chrX 42261438 42261636 -120338294 - MER67C LTR ERV1 -508 202 4 297 51 0 0 chrX 42263838 42263877 -120336053 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2044 139 3 0 chrX 42263880 42264168 -120335762 - AluSx SINE Alu -23 289 1 298 274 103 77 chrX 42264443 42264677 -120335253 - MER92C-int LTR ERV1 -2281 5438 5199 180 0 0 0 chrX 42267827 42267847 -120332083 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2096 127 0 3 chrX 42267849 42268141 -120331789 - AluSx SINE Alu -21 291 1 2832 186 86 28 chrX 42269858 42270512 -120329418 - MER67C LTR ERV1 0 710 19 586 227 32 25 chrX 42270527 42270790 -120329140 - LTR40c LTR ERVL -157 308 4 4318 266 49 58 chrX 42270797 42272356 -120327574 - HERVL40 LTR ERVL -3564 1966 422 548 264 21 14 chrX 42272507 42272651 -120327279 - HERVL40 LTR ERVL -4354 1176 1032 858 267 102 8 chrX 42272681 42272917 -120327013 - HERVL40 LTR ERVL -5201 329 72 2155 170 35 51 chrX 42272917 42273410 -120326520 - MLT1D LTR MaLR 0 505 21 327 217 0 0 chrX 42273441 42273501 -120326429 - HERVL40 LTR ERVL -5454 76 17 2040 235 81 6 chrX 42273515 42273996 -120325934 - LTR40a LTR ERVL -2 517 1 889 204 40 55 chrX 42273996 42274307 -120325623 - L1MC5 LINE L1 -393 7415 7269 236 118 0 0 chrX 42274358 42274392 -120325538 - L1MC4 LINE L1 -799 7243 7210 1930 155 3 3 chrX 42274398 42274688 -120325242 - AluJb SINE Alu -22 290 1 287 219 0 37 chrX 42274701 42274783 -120325147 - L1MC5 LINE L1 -811 7150 7072 2017 118 10 3 chrX 42274948 42275237 -120324693 - MSTC LTR MaLR 0 428 138 2935 104 90 2 chrX 42275246 42275658 -120324272 + MER83 LTR ERV1 1 448 0 207 0 0 0 chrX 42275943 42275966 -120323964 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1467 177 51 4 chrX 42275968 42276222 -120323708 - AluJo SINE Alu -30 282 17 2355 200 79 77 chrX 42276256 42276327 -120323603 - L1ME2 LINE L1 -1 6097 6028 242 180 20 0 chrX 42276327 42276377 -120323553 - LTR66 LTR ERVL -165 445 395 2355 200 79 77 chrX 42276377 42276883 -120323047 - L1ME2 LINE L1 -70 6028 5525 2195 126 3 0 chrX 42276883 42277193 -120322737 + AluSx SINE Alu 1 311 -1 2355 200 79 77 chrX 42277193 42277746 -120322184 - L1ME2 LINE L1 -573 5525 4914 440 210 132 59 chrX 42277743 42277962 -120321968 - L1ME2 LINE L1 -2953 3127 2893 * 1002 202 27 65 chrX 42277965 42278140 -120321790 + MLT1E LTR MaLR 1 164 -429 2463 79 0 0 chrX 42278140 42278444 -120321486 + AluSg1 SINE Alu 1 304 -5 1002 202 27 65 chrX 42278444 42278530 -120321400 + MLT1E LTR MaLR 164 252 -341 910 201 64 29 chrX 42278532 42278736 -120321194 - MLT1E LTR MaLR -62 531 321 304 183 0 17 chrX 42278734 42278794 -120321136 + MLT1F LTR MaLR 484 542 0 * 339 215 149 9 chrX 42278798 42278905 -120321025 + MLT1F-int LTR MaLR 5 126 -1609 343 315 49 28 chrX 42278908 42279051 -120320879 + MLT1F-int LTR MaLR 737 882 -489 1693 232 96 62 chrX 42279237 42279632 -120320298 - L1ME2 LINE L1 -4665 1415 1035 1583 158 32 120 chrX 42279632 42280032 -120319898 - MLT1A1 LTR MaLR 0 365 1 1693 232 96 62 chrX 42280032 42280757 -120319173 - L1ME2 LINE L1 -5045 1035 257 1017 176 6 0 chrX 42280762 42280927 -120319003 - AluJb SINE Alu 0 312 147 490 270 22 29 chrX 42280992 42281129 -120318801 - L1ME2 LINE L1 -5903 167 32 1465 196 57 19 chrX 42281153 42281517 -120318413 - L1M4 LINE L1 -1151 4995 4616 612 225 189 13 chrX 42281525 42281752 -120318178 + L1M4 LINE L1 2562 2828 -3318 24 0 0 0 chrX 42281930 42281954 -120317976 + AT_rich Low_complexity Low_complexity 1 24 0 1941 155 48 109 chrX 42282335 42282832 -120317098 + MLT1C LTR MaLR 1 467 0 2865 149 13 12 chrX 42282832 42283426 -120316504 + MLT1C-int LTR MaLR 1 709 -662 308 206 0 0 chrX 42283418 42283481 -120316449 + MLT1C-int LTR MaLR 825 887 -484 * 299 317 10 0 chrX 42283543 42283644 -120316286 + MLT-int LTR MaLR 676 777 -958 2862 96 36 12 chrX 42283772 42284190 -120315740 - MSTA LTR MaLR 0 428 1 15123 177 15 7 chrX 42284589 42287220 -120312710 - ERVL LTR ERVL -2402 3362 642 2330 184 2 41 chrX 42287214 42287681 -120312249 - MER31B-int LTR ERV1 -4157 779 331 * 851 113 0 0 chrX 42287873 42287988 -120311942 + AluSg/x SINE Alu 187 301 -11 798 182 63 0 chrX 42287988 42288131 -120311799 - MER31B-int LTR ERV1 -4775 161 10 1743 136 22 95 chrX 42288174 42288572 -120311358 - MER31B LTR ERV1 0 661 90 1640 154 19 0 chrX 42288573 42288832 -120311098 - ERVL LTR ERVL -695 5069 4806 2171 140 25 81 chrX 42288852 42289294 -120310636 + MLT1C-int LTR MaLR 955 1371 0 1299 128 102 13 chrX 42289296 42289531 -120310399 + MLT1C LTR MaLR 3 258 -209 1138 200 32 56 chrX 42289525 42289810 -120310120 + MLT1C LTR MaLR 190 467 0 * 354 221 18 35 chrX 42290742 42290761 -120309169 - L1MA10 LINE L1 0 6334 6316 6406 218 56 26 chrX 42290761 42292039 -120307891 - L1ME2 LINE L1 -9 6089 4851 2864 181 11 40 chrX 42292039 42292613 -120307317 - MER74A LTR ERVL 0 558 2 6406 218 56 26 chrX 42292613 42294039 -120305891 - L1ME2 LINE L1 -1247 4851 3307 610 212 208 5 chrX 42294031 42294243 -120305687 - L1ME2 LINE L1 -3330 2750 2496 * 1495 210 11 16 chrX 42294261 42294632 -120305298 + L1M4 LINE L1 4625 4993 -1153 1392 296 66 24 chrX 42294752 42295390 -120304540 - L1ME2 LINE L1 -5404 666 2 1722 220 56 65 chrX 42295390 42296361 -120303569 - L1M4 LINE L1 -1817 4329 3325 1796 231 44 11 chrX 42296397 42296948 -120302982 + L1ME3 LINE L1 2405 2973 -3173 1048 68 23 0 chrX 42296948 42297081 -120302849 + AluSx SINE Alu 1 136 -176 13305 17 0 0 chrX 42297081 42299398 -120300532 + L1PA4 LINE L1 3837 6152 -3 1342 117 0 0 chrX 42299423 42299611 -120300319 + AluSx SINE Alu 121 308 -4 2153 93 4 4 chrX 42300727 42301007 -120298923 + AluSx SINE Alu 19 298 -14 1062 284 35 15 chrX 42301757 42302211 -120297719 + L1ME3 LINE L1 3172 3634 -2512 3226 199 57 52 chrX 42302218 42303216 -120296714 + L1ME3 LINE L1 5136 6126 -36 294 156 31 0 chrX 42303233 42303297 -120296633 + L1ME3 LINE L1 6096 6161 -1 269 313 0 20 chrX 42303370 42303469 -120296461 - L1ME LINE L1 -631 5535 5439 207 0 0 0 chrX 42303677 42303700 -120296230 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 376 136 0 0 chrX 42303706 42303772 -120296158 - L1 LINE L1 -2130 4016 3951 5163 28 3 0 chrX 42303784 42304387 -120295543 - L1PA3 LINE L1 0 6155 5551 2429 20 5 0 chrX 42304387 42304816 -120295114 + L1PA3 LINE L1 5117 5547 -608 186 254 17 17 chrX 42306592 42306651 -120293279 - L2 LINE L2 0 3313 3255 467 311 95 43 chrX 42306801 42307148 -120292782 - MLT1J LTR MaLR -144 367 3 1427 180 25 25 chrX 42307427 42307710 -120292220 + AluJo SINE Alu 23 305 -7 567 288 35 12 chrX 42308351 42308521 -120291409 + MIR SINE MIR 34 207 -55 357 260 0 0 chrX 42308553 42308630 -120291300 + Tigger3(Golem) DNA MER2_type 66 142 -2887 * 1633 144 0 19 chrX 42308627 42308890 -120291040 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 733 283 85 36 chrX 42311556 42312001 -120287929 + MLT1H LTR MaLR 81 547 -2 227 243 27 27 chrX 42312193 42312267 -120287663 - MER9 LTR ERVK -208 303 230 239 283 30 30 chrX 42312281 42312380 -120287550 + MLT-int LTR MaLR 464 562 -1173 532 254 72 108 chrX 42313004 42313366 -120286564 + MLT1H-int LTR MaLR 1023 1371 0 2146 238 85 33 chrX 42313412 42313665 -120286265 - L1MCc LINE L1 -4889 1534 1296 1739 177 28 11 chrX 42313665 42314021 -120285909 - MLT1A1 LTR MaLR 0 365 4 2146 238 85 33 chrX 42314021 42314639 -120285291 - L1MCc LINE L1 -5127 1296 808 1272 272 117 21 chrX 42314744 42315274 -120284656 - L1MCc LINE L1 -5824 599 19 701 227 64 81 chrX 42315313 42315652 -120284278 + MLT1H LTR MaLR 54 403 -192 1222 219 172 79 chrX 42315673 42316167 -120283763 + MLT1F LTR MaLR 3 542 0 276 214 94 51 chrX 42316191 42316308 -120283622 + MLT1H LTR MaLR 428 549 0 228 250 36 79 chrX 42316536 42316676 -120283254 - L1ME LINE L1 -284 5837 5704 581 210 56 31 chrX 42316698 42316860 -120283070 + MIR SINE MIR 9 174 -88 1698 207 65 43 chrX 42316871 42317316 -120282614 - MLT1C LTR MaLR -2 465 11 320 290 98 42 chrX 42317563 42317777 -120282153 - L2 LINE L2 -1216 2098 1873 2253 229 110 4 chrX 42317924 42318404 -120281526 + MLT2E LTR ERVL 83 613 -15 649 273 148 9 chrX 42318409 42318754 -120281176 - HAL1b LINE L1 -854 494 102 315 262 158 11 chrX 42319137 42319320 -120280610 - L1MC4 LINE L1 -143 7899 7690 7949 219 44 44 chrX 42319320 42321025 -120278905 - L1ME1 LINE L1 -4 6162 4459 2318 60 3 0 chrX 42321025 42321310 -120278620 + AluY SINE Alu 2 287 -24 7949 219 44 44 chrX 42321310 42322638 -120277292 - L1ME1 LINE L1 -1707 4459 3129 2423 99 0 0 chrX 42322638 42322950 -120276980 + AluSx SINE Alu 1 312 0 7949 219 44 44 chrX 42322950 42323495 -120276435 - L1ME1 LINE L1 -3037 3129 2586 643 106 43 11 chrX 42323500 42323594 -120276336 - Tigger7 DNA MER2_type 0 2487 2391 1586 193 4 0 chrX 42323596 42323860 -120276070 - Tigger7 DNA MER2_type -468 265 1 853 230 133 0 chrX 42323860 42324160 -120275770 - L1ME1 LINE L1 -3565 2581 2242 689 205 97 5 chrX 42324143 42324328 -120275602 - L1MD3 LINE L1 -12 7983 7782 * 2334 197 127 11 chrX 42324328 42324823 -120275107 - MER77 LTR ERV1 -4 601 22 3124 185 134 132 chrX 42324861 42325229 -120274701 - L1MD3 LINE L1 -220 7775 7409 608 198 33 0 chrX 42325229 42325350 -120274580 - MLT1F1 LTR MaLR -442 125 1 3124 185 134 132 chrX 42325350 42326032 -120273898 - L1MD3 LINE L1 -586 7409 6599 2306 97 0 0 chrX 42326032 42326324 -120273606 + AluSx SINE Alu 1 293 -14 210 105 0 0 chrX 42326324 42326362 -120273568 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 3124 185 134 132 chrX 42326367 42326473 -120273457 - L1MD3 LINE L1 -1396 6599 6495 4244 235 22 31 chrX 42326475 42326807 -120273123 - L1M4 LINE L1 -1287 4859 4525 2948 12 0 0 chrX 42326807 42327139 -120272791 - L1PA4 LINE L1 -11 6144 5813 4244 235 22 31 chrX 42327139 42327176 -120272754 - L1M4 LINE L1 -1621 4525 4489 1554 88 31 18 chrX 42327176 42327402 -120272528 + MER30 DNA MER1_type 1 229 -1 4244 235 22 31 chrX 42327402 42328317 -120271613 - L1M4 LINE L1 -1657 4489 3586 1007 141 6 12 chrX 42328324 42328487 -120271443 + L1MB5 LINE L1 5494 5655 -525 1318 134 10 10 chrX 42328489 42328698 -120271232 - MER47B DNA MER2_type 0 418 210 6220 166 22 9 chrX 42328699 42329815 -120270115 + LTR19B-int LTR ERV1 3464 4594 -421 6020 86 22 20 chrX 42329809 42330673 -120269257 + LTR19B-int LTR ERV1 4718 5583 -3 * 3155 93 83 63 chrX 42330676 42331245 -120268685 + LTR19B LTR ERV1 1 580 0 484 216 108 3 chrX 42331245 42331393 -120268537 - MER47B DNA MER2_type -207 211 1 2498 166 34 14 chrX 42331394 42331894 -120268036 + L1MB5 LINE L1 5657 6166 -8 2363 164 42 15 chrX 42331444 42331900 -120268030 + L1MB5 LINE L1 5707 6174 0 1434 186 163 23 chrX 42331896 42332149 -120267781 + L1MC4a LINE L1 4992 5208 -956 * 1709 164 18 0 chrX 42332149 42332430 -120267500 + AluJo SINE Alu 4 289 -23 1434 186 163 23 chrX 42332430 42332848 -120267082 + L1MC4a LINE L1 5208 5759 -405 6505 197 80 30 chrX 42332848 42333006 -120266924 + L1MC4a LINE L1 6053 6202 -1606 2244 104 17 0 chrX 42333006 42333304 -120266626 + AluSx SINE Alu 1 303 -9 6505 197 80 30 chrX 42333304 42333617 -120266313 + L1MC4a LINE L1 6202 6498 -1310 201 39 0 0 chrX 42333617 42333643 -120266287 + (GA)n Simple_repeat Simple_repeat 1 26 0 6505 197 80 30 chrX 42333643 42334022 -120265908 + L1MC4a LINE L1 6498 6857 -951 207 69 0 0 chrX 42334022 42334051 -120265879 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6505 197 80 30 chrX 42334051 42334455 -120265475 + L1MC4a LINE L1 6857 7239 -569 2447 86 0 0 chrX 42334455 42334758 -120265172 + AluSq SINE Alu 1 303 -10 6505 197 80 30 chrX 42334758 42335143 -120264787 + L1MC4a LINE L1 7239 7806 -2 690 148 6 159 chrX 42335182 42335364 -120264566 - L1ME LINE L1 -526 5640 5487 1985 231 31 61 chrX 42335377 42335917 -120264013 + MLT1F1 LTR MaLR 1 549 -18 690 272 34 38 chrX 42335919 42336154 -120263776 + L1MC5 LINE L1 5426 5659 -2149 6714 135 28 5 chrX 42336169 42337291 -120262639 + L1MC1 LINE L1 5175 6333 0 455 211 234 28 chrX 42337287 42337505 -120262425 + L1MC5 LINE L1 5673 5935 -1873 * 273 214 36 0 chrX 42337506 42337590 -120262340 + (TA)n Simple_repeat Simple_repeat 2 88 0 3014 82 3 3 chrX 42338896 42339260 -120260670 + THE1B LTR MaLR 1 364 0 2099 209 110 71 chrX 42339549 42340176 -120259754 + L1MC5 LINE L1 6558 7242 -719 1725 154 7 40 chrX 42340176 42340364 -120259566 + AluJo SINE Alu 1 177 -135 2508 60 3 3 chrX 42340364 42340664 -120259266 + AluY SINE Alu 1 300 -11 1725 154 7 40 chrX 42340664 42340774 -120259156 + AluJo SINE Alu 177 289 -23 2099 209 110 71 chrX 42340774 42341098 -120258832 + L1MC5 LINE L1 7242 7552 -409 656 247 49 0 chrX 42341098 42341289 -120258641 + MLT1E LTR MaLR 1 212 -442 * 3218 98 60 29 chrX 42341286 42341835 -120258095 - Tigger3(Golem) DNA MER2_type -186 2843 2278 708 160 19 0 chrX 42341826 42341932 -120257998 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 10719 206 40 42 chrX 42341932 42343218 -120256712 + L1M2 LINE L1 2578 3866 -3699 1677 156 140 55 chrX 42343218 42343261 -120256669 + MSTD LTR MaLR 1 39 -357 1820 148 41 0 chrX 42343261 42343619 -120256311 + AluJb SINE Alu 1 369 0 1677 156 140 55 chrX 42343619 42343939 -120255991 + MSTD LTR MaLR 39 396 0 10719 206 40 42 chrX 42343939 42346213 -120253717 + L1M2 LINE L1 3866 6142 -1423 783 148 0 8 chrX 42346216 42346338 -120253592 - FLAM_A SINE Alu -2 140 20 3127 135 76 16 chrX 42346338 42347067 -120252863 + L1M2 LINE L1 6361 7156 -575 1114 284 16 70 chrX 42347143 42347632 -120252298 + MER110-int LTR ERV1 3310 3772 -875 2489 64 3 0 chrX 42347634 42347930 -120252000 + AluSq SINE Alu 1 297 -16 849 151 0 0 chrX 42348659 42348778 -120251152 + FLAM_C SINE Alu 1 119 -14 31 0 0 0 chrX 42348781 42348812 -120251118 + AT_rich Low_complexity Low_complexity 1 31 0 256 365 9 9 chrX 42349977 42350245 -120249685 - HERVL74 LTR ERVL -813 2743 2316 1150 253 100 38 chrX 42351742 42352221 -120247709 + MLT2B1 LTR ERVL 4 512 -8 1653 149 0 84 chrX 42354065 42354408 -120245522 + AluJo SINE Alu 1 317 0 1932 185 85 41 chrX 42354667 42355175 -120244755 - LTR55 LTR ERV -18 530 1 694 245 83 9 chrX 42355179 42355395 -120244535 - L1M4 LINE L1 -1158 4988 4757 * 1478 221 38 55 chrX 42355388 42355918 -120244012 - L1M4 LINE L1 -1644 4502 3982 4444 134 156 24 chrX 42355923 42356919 -120243011 - MER11B LTR ERVK -4 1232 1 393 0 0 0 chrX 42356941 42356988 -120242942 + L1PA3 LINE L1 6109 6155 0 316 280 23 38 chrX 42357003 42357135 -120242795 - HAL1 LINE L1 -2375 132 3 25 51 0 0 chrX 42357514 42357553 -120242377 + AT_rich Low_complexity Low_complexity 1 39 0 272 274 24 16 chrX 42357820 42357944 -120241986 - L1M4 LINE L1 -3667 2479 2355 1901 162 3 3 chrX 42357979 42358269 -120241661 - AluJb SINE Alu -22 290 1 701 174 0 87 chrX 42358365 42358514 -120241416 + MLT1A1 LTR MaLR 14 149 -225 2624 148 14 37 chrX 42358514 42358708 -120241222 + MSTB LTR MaLR 1 198 -228 1258 134 10 15 chrX 42358708 42358910 -120241020 + L1PB3 LINE L1 5954 6154 0 2624 148 14 37 chrX 42358910 42359149 -120240781 + MSTB LTR MaLR 198 424 -2 1891 153 2 99 chrX 42359151 42359564 -120240366 + MSTB-int LTR MaLR 3 375 -1205 1484 171 63 22 chrX 42359642 42360005 -120239925 + SVA Other Other 436 813 -573 189 0 0 0 chrX 42360107 42360128 -120239802 + (A)n Simple_repeat Simple_repeat 1 21 0 745 89 0 0 chrX 42360200 42360290 -120239640 - AluSg/x SINE Alu -14 296 207 7165 168 45 17 chrX 42360292 42360420 -120239510 + MSTB-int LTR MaLR 361 484 -1167 2393 103 0 0 chrX 42360420 42360731 -120239199 + AluSx SINE Alu 1 311 -1 7165 168 45 17 chrX 42360731 42361857 -120238073 + MSTB-int LTR MaLR 484 1651 0 2106 188 115 3 chrX 42361857 42362240 -120237690 + MSTB LTR MaLR 1 426 0 994 209 49 18 chrX 42362240 42362465 -120237465 + MLT1A1 LTR MaLR 134 365 0 255 217 0 0 chrX 42362523 42362583 -120237347 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 284 279 29 0 chrX 42362690 42362794 -120237136 - L1M4 LINE L1 -3796 2350 2244 2573 103 138 5 chrX 42363767 42364145 -120235785 - MSTA LTR MaLR 0 428 1 1166 285 73 9 chrX 42364150 42364603 -120235327 - L1M4 LINE L1 -1780 4366 3885 297 244 183 5 chrX 42364665 42364862 -120235068 - L1M4 LINE L1 -2745 3401 3170 269 208 52 13 chrX 42365508 42365585 -120234345 - L1MC4 LINE L1 -1349 6693 6614 283 315 0 0 chrX 42365588 42365677 -120234253 - L1MC4 LINE L1 -1340 6702 6614 253 236 45 45 chrX 42365665 42365754 -120234176 + L1MC4 LINE L1 6614 6702 -1340 * 249 279 47 0 chrX 42365689 42365775 -120234155 - L1MC4 LINE L1 -1339 6703 6614 * 233 175 32 48 chrX 42365734 42365797 -120234133 + L1MC4 LINE L1 2006 2067 -4359 * 270 213 35 42 chrX 42365827 42365946 -120233984 + L1MC4 LINE L1 1995 6983 -1339 229 318 23 0 chrX 42365915 42366003 -120233927 + L1MC4 LINE L1 6894 6983 -1339 * 222 214 0 0 chrX 42366003 42366045 -120233885 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 2058 135 30 0 chrX 42366086 42366382 -120233548 - AluSx SINE Alu -7 305 1 2596 127 70 5 chrX 42366900 42367302 -120232628 - MSTA LTR MaLR 0 428 1 771 284 117 35 chrX 42369117 42369603 -120230327 - L1MC4a LINE L1 -1714 6094 5569 2027 122 3 14 chrX 42372249 42372543 -120227387 - AluJo SINE Alu -21 291 1 761 155 136 0 chrX 42373048 42373203 -120226727 + MER104 DNA MER2_type 5 180 0 229 250 80 10 chrX 42373277 42373377 -120226553 - L1MC4 LINE L1 0 8042 7936 259 278 9 70 chrX 42373452 42373567 -120226363 + MER5B DNA MER1_type 1 108 -70 476 296 132 5 chrX 42373574 42373794 -120226136 + MIR SINE MIR 2 249 -13 198 143 0 0 chrX 42373798 42373833 -120226097 + (CTA)n Simple_repeat Simple_repeat 1 35 0 386 20 20 0 chrX 42374030 42374081 -120225849 + (TG)n Simple_repeat Simple_repeat 2 53 0 3754 120 21 7 chrX 42374201 42374769 -120225161 + L1MA6 LINE L1 5725 6300 0 279 254 160 28 chrX 42374802 42374983 -120224947 + L1MC4a LINE L1 5936 6140 -1668 1616 193 110 64 chrX 42375233 42375790 -120224140 + L1MC5 LINE L1 6558 7133 -828 2352 94 0 0 chrX 42375793 42376090 -120223840 + AluY SINE Alu 1 297 -14 3429 145 19 15 chrX 42376090 42376675 -120223255 + L1MB7 LINE L1 5598 6184 0 1814 281 82 9 chrX 42377776 42378774 -120221156 + L1ME3A LINE L1 4755 5831 -339 2357 199 218 10 chrX 42378808 42379583 -120220347 + L1ME1 LINE L1 5047 5966 -200 673 243 72 64 chrX 42379608 42379862 -120220068 + MER77 LTR ERV1 332 656 -22 6962 99 0 1 chrX 42379862 42380767 -120219163 + HERVL-A2 LTR ERVL 4751 5654 0 2101 160 52 35 chrX 42380767 42381306 -120218624 + MLT2A2 LTR ERVL 1 554 0 1850 229 133 6 chrX 42381597 42382108 -120217822 + L1MC4 LINE L1 6342 6917 -1125 2249 148 24 26 chrX 42382158 42382210 -120217720 + MSTB LTR MaLR 1 52 -374 2268 109 0 0 chrX 42382210 42382503 -120217427 + AluSx SINE Alu 1 293 -19 2249 148 24 26 chrX 42382503 42382828 -120217102 + MSTB LTR MaLR 52 377 -49 2489 199 82 31 chrX 42382838 42383321 -120216609 + L1MC4 LINE L1 6902 7359 -683 2053 132 3 0 chrX 42383321 42383624 -120216306 + AluSx SINE Alu 1 304 -8 2489 199 82 31 chrX 42383624 42383922 -120216008 + L1MC4 LINE L1 7359 7830 -212 982 182 132 41 chrX 42383922 42384142 -120215788 + MER76 LTR ERV 1 240 -448 391 261 8 23 chrX 42384668 42384798 -120215132 + L1MC4 LINE L1 7891 8018 -24 * 486 279 119 56 chrX 42384796 42385190 -120214740 + L1ME LINE L1 5364 5782 -339 1929 168 33 55 chrX 42385208 42385607 -120214323 + MLT1B LTR MaLR 1 390 0 2311 238 29 37 chrX 42385768 42386394 -120213536 + L1MDb LINE L1 141 761 -5782 5017 163 44 4 chrX 42386396 42387218 -120212712 - MER54A LTR ERVL 0 901 47 2021 219 86 34 chrX 42387192 42387749 -120212181 + MER21B LTR ERV1 142 727 -136 * 225 108 0 27 chrX 42387729 42387766 -120212164 - MLT1B LTR MaLR -354 36 1 * 3052 181 79 59 chrX 42387770 42388653 -120211277 + L1MDb LINE L1 1169 2069 -4471 2122 115 0 0 chrX 42388819 42389115 -120210815 - AluSx SINE Alu -16 296 1 2279 77 0 10 chrX 42389226 42389525 -120210405 + AluSc SINE Alu 1 296 -13 3923 220 54 45 chrX 42389525 42390793 -120209137 + L1MD1 LINE L1 1302 2557 -3983 1652 169 48 65 chrX 42390793 42391190 -120208740 + MLT1B LTR MaLR 1 390 0 3923 220 54 45 chrX 42391190 42391221 -120208709 + L1MD1 LINE L1 2557 2586 -3954 1881 128 31 0 chrX 42391221 42391509 -120208421 + AluJb SINE Alu 1 297 -15 3923 220 54 45 chrX 42391509 42391687 -120208243 + L1MD1 LINE L1 2586 2761 -3779 2044 116 3 0 chrX 42391687 42391979 -120207951 + AluSx SINE Alu 1 293 -19 3923 220 54 45 chrX 42391979 42392245 -120207685 + L1MD1 LINE L1 2761 3079 -3461 1293 101 0 21 chrX 42392245 42392433 -120207497 - AluSg/x SINE Alu 0 312 129 1221 225 35 19 chrX 42392434 42392750 -120207180 + L1MD1 LINE L1 3073 3393 -3147 2191 93 13 7 chrX 42392751 42393052 -120206878 + AluSx SINE Alu 1 303 -9 3805 145 25 22 chrX 42393054 42393273 -120206657 + L1MA5 LINE L1 5613 5830 -470 1941 111 59 0 chrX 42393273 42393561 -120206369 + AluSx SINE Alu 1 305 -7 3805 145 25 22 chrX 42393561 42394025 -120205905 + L1MA5 LINE L1 5830 6298 -2 2226 96 0 0 chrX 42394028 42394319 -120205611 + AluSx SINE Alu 1 291 -21 21 0 0 0 chrX 42394326 42394347 -120205583 + AT_rich Low_complexity Low_complexity 1 21 0 4510 185 60 18 chrX 42394358 42394454 -120205476 + L1MD1 LINE L1 5295 5385 -1251 2278 85 0 0 chrX 42394454 42394748 -120205182 + AluSx SINE Alu 1 294 -18 4510 185 60 18 chrX 42394748 42395936 -120203994 + L1MD1 LINE L1 5385 6627 -9 557 250 72 55 chrX 42395920 42396156 -120203774 + L1ME1 LINE L1 5884 6123 -43 * 2123 107 7 3 chrX 42398961 42399271 -120200659 + AluSx SINE Alu 1 311 -1 655 224 133 20 chrX 42399901 42400097 -120199833 + MLT1J LTR MaLR 286 503 -8 259 91 0 0 chrX 42401135 42401168 -120198762 - Alu SINE Alu -46 256 224 621 72 0 24 chrX 42401721 42401804 -120198126 + MSTD LTR MaLR 1 81 -315 257 65 0 0 chrX 42401804 42401835 -120198095 + MSTD LTR MaLR 45 75 -321 522 320 11 0 chrX 42402278 42402453 -120197477 + (CCA)n Simple_repeat Simple_repeat 3 179 0 1016 202 14 16 chrX 42404013 42404249 -120195681 + MIR SINE MIR 5 232 -30 2215 79 0 17 chrX 42404330 42404622 -120195308 + AluSg SINE Alu 5 291 -19 2242 83 37 0 chrX 42405234 42405573 -120194357 - AluSx SINE Alu 0 350 1 216 0 0 0 chrX 42406074 42406098 -120193832 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1819 143 3 37 chrX 42406190 42406511 -120193419 + AluSx SINE Alu 1 310 -2 2523 45 0 3 chrX 42406805 42407115 -120192815 + AluY SINE Alu 1 309 -2 225 0 0 0 chrX 42407187 42407212 -120192718 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 1927 148 3 0 chrX 42407214 42407518 -120192412 - AluSx SINE Alu -7 305 1 23 68 0 0 chrX 42408060 42408104 -120191826 + AT_rich Low_complexity Low_complexity 1 44 0 2228 194 37 177 chrX 42408151 42408451 -120191479 + L1ME3A LINE L1 5222 5562 -608 2232 94 7 0 chrX 42408451 42408758 -120191172 - AluSq SINE Alu -4 309 1 2228 194 37 177 chrX 42408758 42409526 -120190404 + L1ME3A LINE L1 5562 6164 -6 2282 97 3 0 chrX 42409588 42409899 -120190031 + AluSx SINE Alu 1 312 0 2132 110 3 10 chrX 42409908 42410216 -120189714 + AluSq SINE Alu 1 306 -7 397 294 101 20 chrX 42410223 42410382 -120189548 + L1MC/D LINE L1 5296 5441 -680 814 43 0 17 chrX 42410382 42410499 -120189431 + (TCTCCC)n Simple_repeat Simple_repeat 1 115 0 6015 74 13 15 chrX 42410499 42412032 -120187898 + SVA Other Other 52 1386 0 397 294 101 20 chrX 42412032 42412189 -120187741 + L1MC/D LINE L1 5440 5645 -476 4258 94 9 105 chrX 42412225 42412572 -120187358 + L1PA13 LINE L1 5484 5722 -441 840 150 0 0 chrX 42412572 42412692 -120187238 + FLAM_C SINE Alu 1 120 -13 4258 94 9 105 chrX 42412692 42413096 -120186834 + L1PA13 LINE L1 5722 6163 0 230 265 206 7 chrX 42413108 42413244 -120186686 + L1MC/D LINE L1 5697 5859 -1949 712 305 10 0 chrX 42413271 42413474 -120186456 + MIR SINE MIR 58 262 0 195 242 0 0 chrX 42413483 42413545 -120186385 + (TTA)n Simple_repeat Simple_repeat 2 63 0 597 185 34 112 chrX 42414507 42414685 -120185245 - MIR SINE MIR 0 262 99 1539 135 12 11 chrX 42414950 42415222 -120184708 - L1MA5 LINE L1 -1 6290 6025 1549 179 13 99 chrX 42416335 42416709 -120183221 + MLT1A2 LTR MaLR 24 365 -9 355 187 0 110 chrX 42416723 42416814 -120183116 - MER92B LTR ERV1 -535 101 21 5265 168 34 34 chrX 42417022 42418708 -120181222 - L1MB5 LINE L1 0 6174 4484 2158 104 7 10 chrX 42418708 42419016 -120180914 - AluSx SINE Alu -5 307 1 5265 168 34 34 chrX 42419016 42419425 -120180505 - L1MB5 LINE L1 -1689 4485 4077 1989 196 48 53 chrX 42419497 42420043 -120179887 + LTR55 LTR ERV 1 543 -5 2309 35 0 11 chrX 42421275 42421557 -120178373 + AluY SINE Alu 1 279 -32 195 42 0 0 chrX 42421557 42421581 -120178349 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 997 260 84 54 chrX 42422271 42422771 -120177159 - MLT2B1 LTR ERVL -2 518 4 291 258 58 39 chrX 42423575 42423730 -120176200 + HERVL74 LTR ERVL 1805 1962 -3723 2251 78 10 3 chrX 42424028 42424334 -120175596 + AluSq SINE Alu 1 308 -5 323 311 44 40 chrX 42424550 42424802 -120175128 + HERVL74 LTR ERVL 2316 2695 -861 678 156 0 106 chrX 42425991 42426013 -120173917 - FLAM_C SINE Alu -172 130 107 2097 114 0 0 chrX 42426013 42426310 -120173620 + AluSx SINE Alu 1 297 -15 678 156 0 106 chrX 42426310 42426428 -120173502 - FLAM_C SINE Alu -195 107 5 1618 128 54 27 chrX 42428057 42428353 -120171577 + AluJo SINE Alu 1 304 -8 1960 122 14 0 chrX 42428483 42428771 -120171159 + AluSx SINE Alu 1 292 -20 269 289 0 0 chrX 42429942 42430018 -120169912 + MER66-int LTR ERV1 6115 6190 -486 1202 198 39 144 chrX 42430025 42430484 -120169446 - MER92A LTR ERV1 0 412 2 1648 127 74 18 chrX 42430776 42430914 -120169016 + AluJb SINE Alu 1 130 -182 1960 127 0 3 chrX 42430914 42431234 -120168696 + AluSx SINE Alu 1 319 0 1648 127 74 18 chrX 42431234 42431377 -120168553 + AluJb SINE Alu 130 299 -13 3508 59 5 0 chrX 42432109 42432550 -120167380 + L1PA8 LINE L1 5725 6167 -5 7709 26 5 0 chrX 42433206 42434608 -120165322 - L1PA3 LINE L1 -2 6153 4746 262 310 36 60 chrX 42434642 42434974 -120164956 - MER110-int LTR ERV1 -1872 2775 2452 1620 140 117 15 chrX 42435028 42435293 -120164637 - AluJo SINE Alu -16 296 5 1161 225 64 50 chrX 42435512 42435706 -120164224 - MER110-int LTR ERV1 -1963 2973 2783 2247 106 0 7 chrX 42435706 42436009 -120163921 + AluSx SINE Alu 1 301 -11 1161 225 64 50 chrX 42436009 42436236 -120163694 - MER110-int LTR ERV1 -2153 2783 2546 3669 200 34 5 chrX 42436243 42436914 -120163016 - MER21B LTR ERV1 -130 733 43 413 230 0 0 chrX 42436914 42436988 -120162942 - MER21B LTR ERV1 -771 92 19 654 154 146 0 chrX 42437069 42437179 -120162751 + FLAM_C SINE Alu 3 128 -5 186 184 0 0 chrX 42437256 42437294 -120162636 + MIR SINE MIR 109 146 -62 944 202 76 42 chrX 42437474 42437712 -120162218 + L1ME2 LINE L1 5909 6154 -10 664 199 77 33 chrX 42437957 42438138 -120161792 - MER110-int LTR ERV1 -2745 2191 2003 5697 132 24 57 chrX 42438231 42438363 -120161567 - MER110-int LTR ERV1 -3492 1444 1309 2238 100 7 0 chrX 42438363 42438654 -120161276 - AluSq SINE Alu -19 294 2 5697 132 24 57 chrX 42438654 42439081 -120160849 - MER110-int LTR ERV1 -3627 1309 934 2584 47 0 28 chrX 42439081 42439400 -120160530 - AluY SINE Alu 0 311 2 5697 132 24 57 chrX 42439400 42439886 -120160044 - MER110-int LTR ERV1 -4002 934 433 768 133 11 155 chrX 42440501 42440740 -120159190 - MER92B LTR ERV1 -2 634 228 243 229 0 0 chrX 42440766 42440814 -120159116 - MER92A LTR ERV1 -363 49 2 658 113 99 119 chrX 42441114 42441265 -120158665 - FRAM SINE Alu -18 148 1 265 111 0 0 chrX 42441283 42441319 -120158611 + LTR55 LTR ERV 4 39 -509 285 79 0 0 chrX 42441357 42441395 -120158535 - LTR14 LTR ERVK -508 40 3 1965 186 59 40 chrX 42441401 42441496 -120158434 + LTR55 LTR ERV 32 124 -424 2277 103 3 0 chrX 42441496 42441796 -120158134 - AluSc SINE Alu -8 301 1 1965 186 59 40 chrX 42441796 42442205 -120157725 + LTR55 LTR ERV 124 546 -2 2478 176 2 61 chrX 42442207 42442734 -120157196 + MER77-int LTR ERV1 3641 4136 -55 2186 102 3 7 chrX 42442789 42443082 -120156848 + AluSx SINE Alu 1 292 -20 534 96 0 36 chrX 42443310 42443393 -120156537 - MADE1 DNA Mariner 0 80 1 835 218 0 6 chrX 42444545 42444710 -120155220 + AluSg/x SINE Alu 131 294 -18 3298 184 10 42 chrX 42444935 42445560 -120154370 + MER77 LTR ERV1 1 605 0 1722 105 0 4 chrX 42445685 42445913 -120154017 + AluSg/x SINE Alu 74 300 -10 2044 116 68 3 chrX 42446060 42446352 -120153578 + AluSx SINE Alu 1 311 -1 301 253 23 11 chrX 42447251 42447338 -120152592 + LTR2 LTR ERV1 41 128 -321 899 191 27 21 chrX 42447361 42447549 -120152381 + LTR2 LTR ERV1 261 449 0 2621 91 39 0 chrX 42447724 42448085 -120151845 - THE1C LTR MaLR 0 375 1 241 154 19 19 chrX 42448168 42448220 -120151710 - THE1B LTR MaLR -51 313 262 806 175 0 7 chrX 42448233 42448370 -120151560 + MLT1B LTR MaLR 255 390 0 1907 160 28 0 chrX 42448397 42448684 -120151246 - AluJb SINE Alu -17 295 1 397 276 134 46 chrX 42448696 42448935 -120150995 - L1MEd LINE L1 -5306 813 554 448 233 108 0 chrX 42449004 42449133 -120150797 + L2 LINE L2 2920 3062 -251 204 279 27 99 chrX 42449280 42449330 -120150600 + L2 LINE L2 3210 3249 -64 2342 93 0 3 chrX 42449330 42449640 -120150290 + AluSc SINE Alu 1 309 0 204 279 27 99 chrX 42449640 42449700 -120150230 + L2 LINE L2 3249 3312 -1 2314 73 0 11 chrX 42449712 42450028 -120149902 + AluY SINE Alu 1 313 0 2052 174 15 8 chrX 42450161 42450521 -120149409 - MLT1A1 LTR MaLR 0 365 2 352 289 75 66 chrX 42450585 42450695 -120149235 + L1MC4a LINE L1 290 398 -5721 1114 228 161 20 chrX 42450695 42451042 -120148888 + MSTD LTR MaLR 1 396 0 352 289 75 66 chrX 42451042 42451159 -120148771 + L1MC4a LINE L1 398 519 -5600 323 291 85 16 chrX 42451471 42451660 -120148270 + L1MC4a LINE L1 2964 3165 -2964 201 257 0 14 chrX 42451883 42451938 -120147992 + (TA)n Simple_repeat Simple_repeat 1 56 -17 2263 112 0 0 chrX 42451938 42452232 -120147698 + AluSx SINE Alu 1 294 -18 201 257 0 14 chrX 42452232 42452250 -120147680 + (TA)n Simple_repeat Simple_repeat 56 73 0 387 0 0 0 chrX 42454399 42454442 -120145488 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 244 0 23 chrX 42454782 42454868 -120145062 + L1 LINE L1 4951 5034 -1112 1073 247 80 77 chrX 42455235 42455728 -120144202 + L1MC4a LINE L1 4778 4865 -1264 2115 111 77 17 chrX 42455728 42456081 -120143849 + THE1C LTR MaLR 1 374 -1 1073 247 80 77 chrX 42456081 42456605 -120143325 + L1MC4a LINE L1 4865 5386 -743 2170 119 0 0 chrX 42456606 42456901 -120143029 + AluSx SINE Alu 1 295 -17 1310 153 38 5 chrX 42456903 42457112 -120142818 + AluJb SINE Alu 84 299 -13 345 162 0 0 chrX 42457114 42457182 -120142748 + GA-rich Low_complexity Low_complexity 3 70 0 247 250 0 15 chrX 42457183 42457251 -120142679 + L1MC/D LINE L1 5819 5885 -1923 534 235 0 22 chrX 42457251 42457387 -120142543 - L2 LINE L2 -1 3312 3180 324 289 75 21 chrX 42457493 42457682 -120142248 + L1ME LINE L1 5322 5516 -650 2331 90 0 0 chrX 42457762 42458051 -120141879 + AluSx SINE Alu 1 289 -23 617 204 158 36 chrX 42458200 42458396 -120141534 + MIR SINE MIR 43 262 0 1739 153 14 89 chrX 42458553 42458630 -120141300 + MER58B DNA MER1_type 10 91 -2329 1809 150 7 4 chrX 42458630 42458904 -120141026 - AluJb SINE Alu -21 291 17 1739 153 14 89 chrX 42458904 42459185 -120140745 + MER58B DNA MER1_type 91 341 0 754 246 0 0 chrX 42459185 42459376 -120140554 + L1ME LINE L1 3366 3556 -2573 1181 78 0 0 chrX 42459376 42459518 -120140412 + AluSq/x SINE Alu 1 142 -170 446 158 0 13 chrX 42459518 42459617 -120140313 + AluJb SINE Alu 210 307 0 393 153 0 0 chrX 42459617 42459689 -120140241 + GA-rich Low_complexity Low_complexity 3 74 0 1237 92 0 0 chrX 42459709 42459862 -120140068 + AluSq SINE Alu 145 297 -16 545 255 65 0 chrX 42459862 42460046 -120139884 + L1ME LINE L1 3542 3737 -2392 282 241 74 46 chrX 42460079 42460187 -120139743 + L1MC5 LINE L1 7791 7901 -60 397 326 0 0 chrX 42461191 42461326 -120138604 + L1ME LINE L1 5600 5734 -370 493 204 79 86 chrX 42461378 42461657 -120138273 + L1MC5 LINE L1 7503 7779 -182 1064 167 191 8 chrX 42461695 42461941 -120137989 + AluJo SINE Alu 1 291 -11 1705 148 11 4 chrX 42461943 42462213 -120137717 + AluSq SINE Alu 1 272 -41 852 156 16 4 chrX 42462216 42462468 -120137462 + GA-rich Low_complexity Low_complexity 1 255 0 473 189 7 95 chrX 42462472 42462506 -120137424 + L1MC5 LINE L1 7779 7814 -147 1315 191 38 55 chrX 42462506 42462852 -120137078 - MER58B DNA MER1_type -1 340 1 473 189 7 95 chrX 42462852 42462965 -120136965 + L1MC5 LINE L1 7814 7913 -48 2047 148 6 3 chrX 42463113 42463424 -120136506 + AluJb SINE Alu 1 312 0 1381 162 49 16 chrX 42463448 42463508 -120136422 + MER106B DNA MER1_type 1 58 -1001 233 29 0 29 chrX 42463508 42463543 -120136387 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1381 162 49 16 chrX 42463543 42463729 -120136201 + MER106B DNA MER1_type 58 255 -804 434 250 59 7 chrX 42463732 42463868 -120136062 - MIR SINE MIR -60 202 60 2628 48 0 3 chrX 42464004 42464316 -120135614 - AluY SINE Alu 0 311 1 493 238 56 53 chrX 42464356 42464487 -120135443 + L1ME LINE L1 5150 5279 -885 2314 99 0 7 chrX 42464487 42464791 -120135139 + AluSx SINE Alu 1 302 -10 493 238 56 53 chrX 42464791 42464942 -120134988 + L1ME LINE L1 5279 5435 -729 2004 155 3 0 chrX 42466687 42466991 -120132939 + AluSx SINE Alu 1 305 -7 868 133 0 0 chrX 42467002 42467130 -120132800 + FLAM_C SINE Alu 1 128 -5 1335 176 31 0 chrX 42467280 42467502 -120132428 + AluSx SINE Alu 2 230 -82 1243 198 84 65 chrX 42467916 42468239 -120131691 - MLT1D LTR MaLR 0 505 177 276 53 0 0 chrX 42468247 42468285 -120131645 + (GA)n Simple_repeat Simple_repeat 1 38 0 1475 165 12 8 chrX 42468286 42468431 -120131499 - AluJo SINE Alu -31 281 133 2506 78 0 0 chrX 42468431 42468737 -120131193 - AluY SINE Alu -5 306 1 1475 165 12 8 chrX 42468737 42468839 -120131091 - AluJo SINE Alu -179 133 33 257 80 60 80 chrX 42468840 42468890 -120131040 - MLT1D LTR MaLR -316 189 141 1060 134 58 6 chrX 42468890 42469061 -120130869 - MLT1D LTR MaLR -325 180 1 2251 100 0 0 chrX 42469432 42469742 -120130188 + AluSc SINE Alu 1 310 0 1978 146 11 0 chrX 42469777 42470064 -120129866 + AluJo SINE Alu 1 290 -22 2193 124 13 0 chrX 42470359 42470665 -120129265 + AluSx SINE Alu 3 312 0 1539 202 65 14 chrX 42470884 42471240 -120128690 + MLT1A2 LTR MaLR 1 374 0 829 172 0 0 chrX 42471404 42471538 -120128392 + AluJo SINE Alu 1 134 -178 24 0 0 0 chrX 42471538 42471562 -120128368 + AT_rich Low_complexity Low_complexity 1 24 0 299 282 0 0 chrX 42471603 42471674 -120128256 - MER5A DNA MER1_type -56 133 63 1744 166 63 120 chrX 42471684 42471893 -120128037 - L1MC4 LINE L1 -2 8040 7821 8605 67 4 3 chrX 42471893 42472963 -120126967 + MER11C LTR ERVK 1 1071 0 1847 177 0 3 chrX 42472969 42473279 -120126651 + AluJb SINE Alu 1 309 -3 1744 166 63 120 chrX 42473279 42473417 -120126513 - L1MC4 LINE L1 -226 7816 7672 2159 126 0 7 chrX 42473417 42473719 -120126211 + AluSq SINE Alu 1 300 -13 1744 166 63 120 chrX 42473719 42473946 -120125984 - L1MC4 LINE L1 -370 7672 7491 1076 183 26 18 chrX 42473917 42474146 -120125784 - L1MC4a LINE L1 -1217 6591 6361 * 839 150 0 21 chrX 42474146 42474286 -120125644 + FLAM_C SINE Alu 1 137 -6 1185 170 52 116 chrX 42474286 42474691 -120125239 - L1MC4a LINE L1 -1437 6371 5993 298 0 23 23 chrX 42475102 42475145 -120124785 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 1204 79 17 0 chrX 42475147 42475324 -120124606 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2154 98 7 4 chrX 42475329 42475606 -120124324 - AluSx SINE Alu -34 278 1 680 203 98 0 chrX 42475709 42475872 -120124058 + LTR47A LTR ERVL 274 452 0 553 211 0 0 chrX 42475911 42476015 -120123915 + U13 snRNA snRNA 1 104 0 265 302 9 0 chrX 42476063 42476169 -120123761 + HERVL32 LTR ERVL 81 187 -3231 1459 345 61 61 chrX 42477801 42478965 -120120965 + HERVL32 LTR ERVL 1721 2884 -2459 2338 218 79 72 chrX 42478965 42479785 -120120145 - LTR1B LTR ERV1 0 826 1 1459 345 61 61 chrX 42479785 42480680 -120119250 + HERVL32 LTR ERVL 2884 3677 -1666 1800 124 96 37 chrX 42480680 42481034 -120118896 + THE1C LTR MaLR 1 375 0 1459 345 61 61 chrX 42481034 42481441 -120118489 + HERVL32 LTR ERVL 3677 4083 -1260 2156 119 0 30 chrX 42481458 42481761 -120118169 + AluSx SINE Alu 1 294 -18 2680 136 34 0 chrX 42481781 42482194 -120117736 - MSTA LTR MaLR -1 427 1 2011 85 30 20 chrX 42482579 42482874 -120117056 + L1PA15 LINE L1 5865 6162 -3 315 302 0 87 chrX 42483573 42483633 -120116297 + PABL_B-int LTR ERV1 5633 5697 -1425 2488 93 0 0 chrX 42483633 42483945 -120115985 + AluSx SINE Alu 1 312 0 315 302 0 87 chrX 42483945 42484033 -120115897 + PABL_B-int LTR ERV1 5697 5768 -1354 605 164 0 57 chrX 42484233 42484355 -120115575 + PABL_B-int LTR ERV1 5968 6082 -676 903 153 90 6 chrX 42484600 42484777 -120115153 + LTR47A LTR ERVL 261 452 0 1011 76 6 13 chrX 42484857 42485014 -120114916 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 1877 151 4 0 chrX 42485019 42485298 -120114632 - AluSq SINE Alu -33 280 1 1893 118 29 38 chrX 42485892 42486207 -120113723 + AluSx SINE Alu 1 312 0 237 108 0 0 chrX 42486207 42486244 -120113686 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 798 243 6 0 chrX 42487477 42487646 -120112284 - LTR65 LTR ERV1 -12 657 488 1286 163 19 0 chrX 42487733 42487948 -120111982 - MER20 DNA MER1_type 0 219 1 1762 129 0 52 chrX 42488107 42488443 -120111487 + AluSx SINE Alu 1 320 0 1886 146 3 0 chrX 42488448 42488742 -120111188 + AluSx SINE Alu 1 295 -17 1536 194 20 12 chrX 42488745 42489090 -120110840 + L1MD3 LINE L1 4382 4729 -1417 237 108 0 0 chrX 42489774 42489811 -120110119 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 1893 118 29 38 chrX 42489811 42490126 -120109804 - AluSx SINE Alu 0 312 1 1833 209 64 38 chrX 42490730 42490926 -120109004 + L1MD3 LINE L1 5130 5319 -1015 2151 92 7 0 chrX 42490926 42491221 -120108709 + AluSp SINE Alu 1 297 -16 1833 209 64 38 chrX 42491221 42491372 -120108558 + L1MD3 LINE L1 5319 5465 -869 1580 151 72 4 chrX 42491372 42491650 -120108280 + AluJb SINE Alu 1 297 -15 1833 209 64 38 chrX 42491650 42492060 -120107870 + L1MD3 LINE L1 5465 5863 -471 1891 124 13 0 chrX 42492060 42492358 -120107572 - AluSx SINE Alu -10 302 1 1833 209 64 38 chrX 42492358 42492580 -120107350 + L1MD3 LINE L1 5863 6334 0 815 129 23 0 chrX 42492654 42492786 -120107144 + AluJo SINE Alu 1 135 -177 2051 97 0 83 chrX 42492842 42493181 -120106749 - AluSx SINE Alu 0 312 2 2104 122 0 0 chrX 42493326 42493622 -120106308 - AluSx SINE Alu -16 296 1 896 151 0 0 chrX 42493747 42493886 -120106044 - FLAM_C SINE Alu -4 139 1 940 119 0 15 chrX 42494020 42494154 -120105776 - FLAM_C SINE Alu -1 132 1 271 318 106 37 chrX 42494448 42494665 -120105265 + MIR SINE MIR 15 246 -16 610 275 113 18 chrX 42494689 42494911 -120105019 - MIR SINE MIR 0 262 20 2785 91 3 3 chrX 42494913 42495277 -120104653 - THE1B LTR MaLR 0 364 1 670 221 45 50 chrX 42495390 42495548 -120104382 + MLT1D LTR MaLR 1 157 -348 2462 181 36 61 chrX 42495548 42496102 -120103828 - MLT2B3 LTR ERVL 0 554 15 993 174 45 147 chrX 42496140 42496271 -120103659 + MLT1D LTR MaLR 149 292 -213 2546 122 57 10 chrX 42496271 42496674 -120103256 + MSTB LTR MaLR 1 422 -4 993 174 45 147 chrX 42496674 42496757 -120103173 + MLT1D LTR MaLR 292 382 -123 1847 155 0 7 chrX 42496757 42497061 -120102869 + AluJb SINE Alu 11 312 0 993 174 45 147 chrX 42497061 42497241 -120102689 + MLT1D LTR MaLR 382 504 -1 2331 232 84 105 chrX 42497243 42497547 -120102383 + MLT1D-int LTR MaLR 2 311 -1060 2129 82 0 7 chrX 42497547 42497829 -120102101 + AluSp SINE Alu 1 280 -33 2331 232 84 105 chrX 42497829 42498924 -120101006 + MLT1D-int LTR MaLR 311 1371 0 780 218 32 50 chrX 42498924 42499019 -120100911 + MLT1D LTR MaLR 1 96 -409 1892 96 92 0 chrX 42499019 42499291 -120100639 + AluSg1 SINE Alu 1 297 -12 780 218 32 50 chrX 42499291 42499415 -120100515 + MLT1D LTR MaLR 96 216 -289 1291 217 66 30 chrX 42499427 42499778 -120100152 + MSTD LTR MaLR 1 396 0 1223 193 16 11 chrX 42499784 42499814 -120100116 + MLT1D LTR MaLR 224 252 -253 1663 123 138 35 chrX 42499814 42500154 -120099776 - THE1C LTR MaLR 0 375 1 1223 193 16 11 chrX 42500154 42500374 -120099556 + MLT1D LTR MaLR 252 499 -6 689 163 0 47 chrX 42500497 42500626 -120099304 + FLAM_C SINE Alu 2 124 -19 26 0 0 0 chrX 42500626 42500652 -120099278 + AT_rich Low_complexity Low_complexity 1 26 0 733 301 10 5 chrX 42500658 42500851 -120099079 + MIR SINE MIR 19 212 -50 638 168 0 77 chrX 42501181 42501324 -120098606 - FLAM_C SINE Alu 0 133 2 1216 148 32 115 chrX 42501333 42501672 -120098258 - AluJo SINE Alu -1 311 1 344 158 384 62 chrX 42502342 42502488 -120097442 - AluJo SINE Alu -105 197 5 874 173 211 42 chrX 42502497 42502757 -120097173 - AluJo SINE Alu -4 308 5 893 172 195 38 chrX 42502761 42502905 -120097025 - AluJb SINE Alu 0 312 192 293 0 27 0 chrX 42502905 42502942 -120096988 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 893 172 195 38 chrX 42502942 42503064 -120096866 - AluJb SINE Alu -120 192 4 559 146 107 0 chrX 42503093 42503196 -120096734 - FLAM_A SINE Alu -16 117 4 212 0 36 0 chrX 42503203 42503231 -120096699 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1059 139 0 88 chrX 42503268 42503506 -120096424 - AluJo SINE Alu -95 217 1 1654 156 3 10 chrX 42505088 42505377 -120094553 - AluJo SINE Alu -25 287 1 208 0 0 59 chrX 42505863 42505897 -120094033 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1993 105 4 0 chrX 42505901 42506178 -120093752 - AluSq SINE Alu -35 278 1 304 115 96 0 chrX 42506980 42507032 -120092898 - L1MB7 LINE L1 -28 6156 6100 334 258 0 11 chrX 42507598 42507687 -120092243 - MIR SINE MIR -34 228 141 261 338 0 0 chrX 42507728 42507799 -120092131 + MIR SINE MIR 79 149 -113 188 286 79 0 chrX 42507848 42507911 -120092019 - MIR SINE MIR -128 134 67 2091 102 0 0 chrX 42508444 42508738 -120091192 + AluSc SINE Alu 1 294 -15 6647 54 9 60 chrX 42508784 42510523 -120089407 + SVA Other Other 13 1386 0 194 255 0 20 chrX 42511052 42511103 -120088827 + MIR SINE MIR 163 212 -50 309 292 71 18 chrX 42511493 42511606 -120088324 + MIR SINE MIR 79 197 -65 2947 114 59 13 chrX 42511708 42512163 -120087767 - Tigger1 DNA MER2_type 0 2418 1943 * 5412 102 21 93 chrX 42512156 42512980 -120086950 - Tigger1 DNA MER2_type -1377 1041 209 1492 84 14 5 chrX 42512980 42513193 -120086737 + L1MA2 LINE L1 6089 6303 -1 5412 102 21 93 chrX 42513193 42513388 -120086542 - Tigger1 DNA MER2_type -2209 209 1 218 32 32 0 chrX 42514661 42514692 -120085238 + (CA)n Simple_repeat Simple_repeat 2 33 0 417 227 6 3 chrX 42514864 42514962 -120084968 - L1ME LINE L1 -424 5697 5598 297 255 112 10 chrX 42514969 42515067 -120084863 - L2 LINE L2 -22 3291 3184 324 0 0 0 chrX 42515083 42515119 -120084811 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 904 154 20 7 chrX 42515120 42515269 -120084661 - FRAM SINE Alu -15 151 1 300 303 53 38 chrX 42515868 42516000 -120083930 - MIR SINE MIR -97 165 32 2130 99 0 0 chrX 42516800 42517094 -120082836 - AluSg SINE Alu -14 296 3 1230 224 0 0 chrX 42517114 42517368 -120082562 - AluJo SINE Alu -23 289 36 1835 153 0 0 chrX 42517368 42517656 -120082274 + AluSx SINE Alu 2 289 -23 225 94 0 0 chrX 42517661 42517693 -120082237 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 540 297 126 21 chrX 42517761 42518047 -120081883 + MER65-int LTR ERV1 4555 4870 -1 1938 109 3 7 chrX 42518081 42518374 -120081556 + AluSx SINE Alu 1 292 -20 356 292 23 15 chrX 42518605 42518735 -120081195 - L1 LINE L1 -1721 4425 4295 1717 154 13 19 chrX 42518805 42519117 -120080813 + AluSx SINE Alu 1 310 -2 2029 139 0 0 chrX 42519684 42519994 -120079936 + AluSg SINE Alu 1 310 0 1004 216 72 5 chrX 42520097 42520319 -120079611 - MER67C LTR ERV1 -282 428 192 548 167 0 56 chrX 42520321 42520429 -120079501 + AluJb SINE Alu 3 104 -208 338 218 194 24 chrX 42520439 42520563 -120079367 - MER67C LTR ERV1 -565 145 1 1792 154 3 3 chrX 42520719 42521012 -120078918 - AluSq SINE Alu -20 293 1 1078 158 15 10 chrX 42521094 42521296 -120078634 - MER65C LTR ERV1 0 461 259 2140 103 7 3 chrX 42521830 42522140 -120077790 + AluSx SINE Alu 1 311 -1 675 219 133 20 chrX 42522770 42522966 -120076964 + MLT1J LTR MaLR 286 503 -8 259 91 0 0 chrX 42524004 42524037 -120075893 - AluSc SINE Alu -45 254 222 621 72 0 24 chrX 42524590 42524673 -120075257 + MSTD LTR MaLR 1 81 -315 257 65 0 0 chrX 42524673 42524704 -120075226 + MSTD LTR MaLR 45 75 -321 522 320 11 0 chrX 42525147 42525322 -120074608 + (CCA)n Simple_repeat Simple_repeat 3 179 0 1016 202 14 16 chrX 42526882 42527118 -120072812 + MIR SINE MIR 5 232 -30 2215 79 0 17 chrX 42527199 42527491 -120072439 + AluSg SINE Alu 5 291 -19 2250 83 36 0 chrX 42528103 42528443 -120071487 - AluSx SINE Alu 0 351 1 216 0 0 0 chrX 42528944 42528968 -120070962 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2350 66 0 3 chrX 42529060 42529361 -120070569 + AluY SINE Alu 1 300 -11 1904 158 3 0 chrX 42529435 42529789 -120070141 - AluSx SINE Alu 0 355 1 23 68 0 0 chrX 42530331 42530375 -120069555 + AT_rich Low_complexity Low_complexity 1 44 0 803 194 23 30 chrX 42530422 42530693 -120069237 + L1ME3A LINE L1 5222 5489 -675 2245 92 7 0 chrX 42530722 42531027 -120068903 - AluSq SINE Alu -6 307 1 2230 199 54 92 chrX 42531097 42531795 -120068135 + L1ME3A LINE L1 5493 6164 -6 2270 100 3 0 chrX 42531857 42532168 -120067762 + AluSx SINE Alu 1 312 0 2148 110 3 10 chrX 42532168 42532478 -120067452 + AluSq SINE Alu 1 308 -5 4737 75 5 11 chrX 42532618 42533261 -120066669 + SVA Other Other 748 1386 0 397 254 79 8 chrX 42533292 42533418 -120066512 + L1MC/D LINE L1 5511 5645 -476 4240 96 9 105 chrX 42533455 42533802 -120066128 + L1PA13 LINE L1 5484 5722 -441 840 150 0 0 chrX 42533802 42533922 -120066008 + FLAM_C SINE Alu 1 120 -13 4240 96 9 105 chrX 42533922 42534326 -120065604 + L1PA13 LINE L1 5722 6163 0 230 265 206 7 chrX 42534338 42534474 -120065456 + L1MC/D LINE L1 5697 5859 -1949 712 305 10 0 chrX 42534501 42534704 -120065226 + MIR SINE MIR 58 262 0 266 258 0 0 chrX 42534713 42534775 -120065155 + (TTA)n Simple_repeat Simple_repeat 2 63 0 603 185 34 112 chrX 42535742 42535920 -120064010 - MIR SINE MIR 0 262 99 511 176 44 0 chrX 42536194 42536285 -120063645 - MSTC LTR MaLR -333 95 1 803 196 36 50 chrX 42536297 42536421 -120063509 - MLT1D LTR MaLR -289 216 95 2276 101 3 3 chrX 42536421 42536718 -120063212 - AluSg SINE Alu -13 297 1 803 196 36 50 chrX 42536718 42536812 -120063118 - MLT1D LTR MaLR -410 95 1 1600 210 23 84 chrX 42536812 42537250 -120062680 - MLT1D-int LTR MaLR 0 1371 961 828 226 67 108 chrX 42537258 42537572 -120062358 - MLT1D-int LTR MaLR -574 797 497 336 313 33 42 chrX 42537630 42537844 -120062086 + MER83B-int LTR ERV1 2950 3161 -1719 2121 114 0 60 chrX 42537921 42538253 -120061677 - AluSx SINE Alu 0 312 1 1052 231 109 0 chrX 42538471 42538709 -120061221 - MER65-int LTR ERV1 -816 4055 3792 1040 147 114 107 chrX 42538709 42538906 -120061024 + MER4B LTR ERV1 1 202 -408 2092 112 0 19 chrX 42538906 42539219 -120060711 + AluSc SINE Alu 3 309 0 1040 147 114 107 chrX 42539219 42539293 -120060637 + MER4B LTR ERV1 202 274 -336 1234 187 35 38 chrX 42539431 42539782 -120060148 + MER31A LTR ERV1 2 447 -38 970 162 0 13 chrX 42539783 42539937 -120059993 - AluJ SINE Alu -16 296 145 955 147 0 0 chrX 42539987 42540130 -120059800 - AluJ SINE Alu -169 143 1 2117 131 3 0 chrX 42540262 42540553 -120059377 + AluSx SINE Alu 4 295 -17 430 285 132 29 chrX 42540556 42541063 -120058867 - L1MEd LINE L1 -940 1550 915 2122 114 3 0 chrX 42541076 42541396 -120058534 - AluSx SINE Alu 0 312 1 1079 160 0 0 chrX 42541396 42541565 -120058365 - AluSp SINE Alu -1 312 144 1947 148 7 0 chrX 42541930 42542235 -120057695 - AluJb SINE Alu -5 307 1 228 304 0 14 chrX 42542440 42542509 -120057421 - L1MEd LINE L1 -4898 1221 1154 237 132 0 0 chrX 42542514 42542552 -120057378 + (TA)n Simple_repeat Simple_repeat 1 38 0 2238 115 3 0 chrX 42542552 42542857 -120057073 - AluSx SINE Alu -6 306 1 305 333 0 26 chrX 42542860 42542974 -120056956 - HAL1 LINE L1 -1245 1262 1152 260 276 49 59 chrX 42543234 42543530 -120056400 - L1P LINE L1 -1063 5083 4780 1992 128 0 3 chrX 42543581 42543869 -120056061 + AluSx SINE Alu 2 288 -24 3729 187 73 39 chrX 42543877 42544475 -120055455 + L1MD2 LINE L1 4676 5252 -1107 1844 136 19 35 chrX 42544475 42544791 -120055139 + AluSx SINE Alu 1 311 -1 3729 187 73 39 chrX 42544791 42545290 -120054640 + L1MD2 LINE L1 5252 5834 -525 1947 147 0 20 chrX 42545290 42545590 -120054340 + AluSg SINE Alu 1 294 -16 3729 187 73 39 chrX 42545590 42545841 -120054089 + L1MD2 LINE L1 5834 6075 -284 2093 130 0 7 chrX 42545842 42546143 -120053787 - AluSx SINE Alu -13 299 1 39 50 0 0 chrX 42546176 42546236 -120053694 + AT_rich Low_complexity Low_complexity 1 60 0 1610 55 0 0 chrX 42546351 42546552 -120053378 + L1PA4 LINE L1 5951 6151 -4 31 0 0 0 chrX 42546553 42546584 -120053346 + AT_rich Low_complexity Low_complexity 1 31 0 685 38 0 0 chrX 42547166 42547246 -120052684 - U6 snRNA snRNA -27 80 1 2107 120 0 0 chrX 42547341 42547658 -120052272 + AluSq SINE Alu 2 318 0 449 161 12 12 chrX 42548014 42548095 -120051835 - L1M4 LINE L1 -6308 234 154 730 120 25 13 chrX 42548096 42548254 -120051676 + CT-rich Low_complexity Low_complexity 3 162 0 610 197 17 0 chrX 42548257 42548374 -120051556 - AluSg/x SINE Alu 0 310 192 261 119 0 0 chrX 42548377 42548419 -120051511 + FLAM_A SINE Alu 65 106 -27 817 184 112 15 chrX 42548419 42548615 -120051315 + AluJb SINE Alu 6 220 -92 291 109 0 36 chrX 42548615 42548670 -120051260 + FAM SINE Alu 127 179 0 614 193 141 47 chrX 42548685 42548877 -120051053 + AluJo SINE Alu 3 212 -100 831 176 7 13 chrX 42549775 42549953 -120049977 + AluSg/x SINE Alu 130 306 0 445 178 102 34 chrX 42549971 42550056 -120049874 - AluJo SINE Alu -100 212 115 1125 92 0 0 chrX 42550056 42550220 -120049710 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 445 178 102 34 chrX 42550220 42550252 -120049678 - AluJo SINE Alu -197 115 87 908 207 37 18 chrX 42550252 42550469 -120049461 - AluJo SINE Alu -91 221 1 570 29 0 0 chrX 42552042 42552110 -120047820 + (TTTC)n Simple_repeat Simple_repeat 3 70 0 1491 184 4 11 chrX 42552122 42552400 -120047530 - AluJo SINE Alu -36 276 1 1943 144 0 3 chrX 42552619 42552918 -120047012 - AluSq SINE Alu -11 302 5 356 100 100 0 chrX 42553725 42553785 -120046145 - L1MB7 LINE L1 -28 6156 6091 323 209 35 12 chrX 42554359 42554445 -120045485 - MIR SINE MIR -34 228 141 189 366 0 0 chrX 42554486 42554557 -120045373 + MIR SINE MIR 79 149 -113 212 312 46 28 chrX 42555869 42555978 -120043952 + MIR SINE MIR 79 189 -73 2909 133 41 4 chrX 42556077 42556536 -120043394 - Tigger1 DNA MER2_type 0 2418 1943 * 4809 158 69 49 chrX 42556531 42557358 -120042572 - Tigger1 DNA MER2_type -1379 1039 187 1411 91 34 0 chrX 42557358 42557567 -120042363 + L1MA2 LINE L1 6089 6304 0 4809 158 69 49 chrX 42557567 42557757 -120042173 - Tigger1 DNA MER2_type -2231 187 2 1951 156 7 0 chrX 42558320 42558621 -120041309 - AluSg SINE Alu -5 305 3 275 0 29 0 chrX 42559334 42559369 -120040561 + (CA)n Simple_repeat Simple_repeat 2 37 0 340 178 7 0 chrX 42559549 42559624 -120040306 - L1MC/D LINE L1 -446 5675 5612 341 277 10 10 chrX 42559626 42559727 -120040203 - L2 LINE L2 -2 3311 3211 270 0 0 0 chrX 42559753 42559783 -120040147 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 947 173 36 18 chrX 42559789 42559957 -120039973 - AluJo SINE Alu -30 282 112 260 301 9 44 chrX 42560539 42560652 -120039278 - MIR SINE MIR -105 157 49 1847 152 0 0 chrX 42561464 42561771 -120038159 - AluY SINE Alu 0 312 6 1761 188 0 0 chrX 42561785 42562083 -120037847 - AluJo SINE Alu -14 298 1 1853 131 3 7 chrX 42562314 42562597 -120037333 + AluSx SINE Alu 4 285 -27 189 0 0 0 chrX 42563011 42563032 -120036898 + (A)n Simple_repeat Simple_repeat 1 21 0 1897 145 16 19 chrX 42563040 42563350 -120036580 + AluSx SINE Alu 3 311 -1 2068 144 3 0 chrX 42563942 42564248 -120035682 + AluSg SINE Alu 1 307 -3 985 215 72 5 chrX 42564348 42564571 -120035359 - MER67C LTR ERV1 -281 429 192 564 122 0 0 chrX 42564572 42564654 -120035276 + AluJ/FLAM SINE Alu 2 83 -229 491 180 264 36 chrX 42564657 42564824 -120035106 - MER67C LTR ERV1 -505 205 1 1205 144 6 0 chrX 42564984 42565157 -120034773 - AluSp SINE Alu -19 294 121 437 205 71 18 chrX 42565204 42565316 -120034614 - Charlie2 DNA MER1_type -888 1974 1857 400 235 101 25 chrX 42565314 42565433 -120034497 - Charlie2 DNA MER1_type -2541 321 194 * 2176 119 0 7 chrX 42565433 42565736 -120034194 - AluSx SINE Alu -11 301 1 6899 13 0 0 chrX 42565829 42566593 -120033337 - L1PA2 LINE L1 -1 6154 5391 769 154 0 0 chrX 42566593 42566710 -120033220 - AluSq/x SINE Alu -194 118 2 1067 168 15 10 chrX 42566791 42566993 -120032937 - MER65C LTR ERV1 0 461 259 1047 279 51 51 chrX 42567020 42567393 -120032537 - MER67C-int LTR ERV1 -1 4870 4498 198 0 0 0 chrX 42567393 42567415 -120032515 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 1942 139 0 0 chrX 42567417 42567697 -120032233 - AluSx SINE Alu -32 280 1 1047 279 51 51 chrX 42567697 42567811 -120032119 - MER67C-int LTR ERV1 -373 4498 4380 370 210 16 0 chrX 42567814 42567876 -120032054 - MER67C-int LTR ERV1 -985 3886 3824 2096 110 3 0 chrX 42567884 42568195 -120031735 + AluY SINE Alu 1 312 0 2462 136 53 41 chrX 42568230 42568537 -120031393 + MER4E LTR ERV1 1 303 -476 2068 138 0 7 chrX 42568537 42568841 -120031089 - AluSx SINE Alu -10 302 1 2462 136 53 41 chrX 42568841 42569128 -120030802 + MER4E LTR ERV1 303 776 -3 347 252 5 112 chrX 42569131 42569221 -120030709 - MER67C-int LTR ERV1 -1076 3795 3697 2065 124 0 0 chrX 42569221 42569504 -120030426 + AluSc SINE Alu 2 284 -25 347 252 5 112 chrX 42569504 42569518 -120030412 - MER67C-int LTR ERV1 -1174 3697 3683 192 40 0 0 chrX 42569518 42569543 -120030387 + (CA)n Simple_repeat Simple_repeat 2 26 0 347 252 5 112 chrX 42569543 42569651 -120030279 - MER67C-int LTR ERV1 -1188 3683 3605 262 225 141 0 chrX 42569663 42569734 -120030196 - MER65-int LTR ERV1 -847 4089 4009 312 202 0 16 chrX 42569735 42569813 -120030117 - MER65-int LTR ERV1 -977 5262 3885 277 160 12 148 chrX 42569821 42569852 -120030078 - MER65-int LTR ERV1 -1152 3784 3750 2076 123 3 20 chrX 42569852 42570154 -120029776 - AluSx SINE Alu -15 297 1 277 160 12 148 chrX 42570154 42570221 -120029709 - MER65-int LTR ERV1 -1186 3750 3235 555 193 123 9 chrX 42570231 42570525 -120029405 + FLAM_C SINE Alu 2 133 0 1053 133 0 11 chrX 42570336 42570577 -120029353 + (GAAA)n Simple_repeat Simple_repeat 2 240 0 403 165 11 11 chrX 42570632 42570723 -120029207 + GA-rich Low_complexity Low_complexity 2 92 0 2177 195 81 109 chrX 42571354 42571528 -120028402 - MER65-int LTR ERV1 -1305 5026 4849 1548 159 19 11 chrX 42571528 42571798 -120028132 - AluJb SINE Alu -6 306 35 2177 195 81 109 chrX 42571798 42571875 -120028055 - MER65-int LTR ERV1 -1482 4849 4771 667 211 8 15 chrX 42571875 42572008 -120027922 - FLAM_C SINE Alu -1 132 1 2177 195 81 109 chrX 42572008 42572864 -120027066 - MER65-int LTR ERV1 -1560 4771 3925 1730 158 28 7 chrX 42572869 42573154 -120026776 + AluSx SINE Alu 1 291 -21 1399 149 106 40 chrX 42573161 42573462 -120026468 - MER4B LTR ERV1 -289 321 1 1104 221 69 0 chrX 42573484 42573701 -120026229 + MER65-int LTR ERV1 3824 4055 -816 888 272 77 57 chrX 42573791 42573914 -120026016 + MER65-int LTR ERV1 4368 4487 -384 1933 134 27 0 chrX 42573914 42574206 -120025724 + AluSq SINE Alu 1 300 -13 888 272 77 57 chrX 42574206 42574575 -120025355 + MER65-int LTR ERV1 4487 4870 -1 1082 173 15 10 chrX 42574602 42574804 -120025126 + MER65C LTR ERV1 259 461 0 988 138 7 0 chrX 42575135 42575280 -120024650 - AluSg SINE Alu -163 147 2 2012 134 13 19 chrX 42575907 42576221 -120023709 - AluSx SINE Alu 0 312 1 1816 110 18 14 chrX 42576654 42576936 -120022994 - AluSx SINE Alu -29 283 1 1637 176 3 22 chrX 42577165 42577478 -120022452 + AluJb SINE Alu 1 307 -5 257 290 57 40 chrX 42578267 42578391 -120021539 + MIR SINE MIR 32 157 -105 1790 169 17 0 chrX 42578992 42579288 -120020642 + AluJo SINE Alu 1 301 -11 271 255 112 10 chrX 42579305 42579403 -120020527 + L2 LINE L2 3184 3291 -22 420 216 6 3 chrX 42579410 42579508 -120020422 + L1ME LINE L1 5598 5697 -424 467 138 11 0 chrX 42579674 42579761 -120020169 + (TG)n Simple_repeat Simple_repeat 2 89 0 1965 111 0 27 chrX 42580485 42580782 -120019148 + AluY SINE Alu 4 292 -19 5119 145 69 50 chrX 42581361 42581556 -120018374 + Tigger1 DNA MER2_type 1 191 -2227 1379 104 19 5 chrX 42581556 42581768 -120018162 - L1MA2 LINE L1 0 6304 6090 5119 145 69 50 chrX 42581768 42582592 -120017338 + Tigger1 DNA MER2_type 191 1039 -1379 2724 144 48 9 chrX 42582587 42583044 -120016886 + Tigger1 DNA MER2_type 1943 2417 -1 * 233 315 46 19 chrX 42583144 42583252 -120016678 - MIR SINE MIR -73 189 79 419 294 80 116 chrX 42585193 42585591 -120014339 - L2 LINE L2 -2 3270 2887 373 281 106 19 chrX 42786460 42786620 -119813310 - MIR SINE MIR -43 219 46 739 233 161 9 chrX 42786798 42787021 -119812909 + MIR SINE MIR 6 262 0 231 220 17 17 chrX 42787215 42787274 -119812656 + L2 LINE L2 3214 3272 0 259 316 20 0 chrX 42787634 42787732 -119812198 + L2 LINE L2 2140 2239 -1075 239 111 0 0 chrX 42787734 42787770 -119812160 + MER63 DNA MER1_type 4 39 -891 373 127 30 96 chrX 42787770 42787888 -119812042 - L1M4 LINE L1 -407 5755 5647 484 311 130 13 chrX 42787890 42788128 -119811802 + L2 LINE L2 3007 3272 0 1555 240 45 55 chrX 42789091 42789439 -119810491 + L1ME3A LINE L1 5624 5967 -203 1810 171 3 0 chrX 42789439 42789732 -119810198 + AluJo SINE Alu 5 298 -14 1555 240 45 55 chrX 42789732 42789913 -119810017 + L1ME3A LINE L1 5967 6148 -22 550 298 57 36 chrX 42789951 42790199 -119809731 + MIR SINE MIR 8 260 -2 936 226 40 33 chrX 42790201 42790475 -119809455 - L1MCb LINE L1 -5364 681 406 1009 162 94 27 chrX 42790478 42790741 -119809189 + MLT1B LTR MaLR 5 226 -164 1880 234 96 9 chrX 42790741 42791305 -119808625 + L1MC4 LINE L1 5391 6003 -2039 * 2657 156 24 28 chrX 42790838 42791339 -119808591 + L1MB8 LINE L1 5530 6028 -150 567 228 16 0 chrX 42791368 42791495 -119808435 - L1MD3 LINE L1 -34 7961 7833 2573 205 28 15 chrX 42791497 42792039 -119807891 - L1MD2 LINE L1 -216 6143 5595 1045 93 33 0 chrX 42792047 42792197 -119807733 + L1PA14 LINE L1 5865 6019 -142 189 298 35 0 chrX 42792437 42792494 -119807436 + L2 LINE L2 3255 3313 0 222 250 0 0 chrX 42792508 42792548 -119807382 + L2 LINE L2 3199 3238 -34 397 283 66 13 chrX 42793011 42793163 -119806767 + MER5B DNA MER1_type 1 160 -18 632 187 0 0 chrX 42793463 42793570 -119806360 - AluJb SINE Alu 0 312 206 235 283 0 50 chrX 42795898 42795958 -119803972 - L2 LINE L2 -17 3255 3199 1524 249 100 7 chrX 42796971 42797432 -119802498 - L2 LINE L2 0 3313 2810 218 143 0 0 chrX 42797937 42797972 -119801958 + MIR SINE MIR 110 144 -64 2081 259 72 36 chrX 42798051 42798824 -119801106 + L1MC4a LINE L1 5366 6166 -1642 1231 274 113 34 chrX 42799067 42799633 -119800297 + L3 LINE CR1 429 1039 -538 413 226 95 51 chrX 42799718 42799855 -119800075 - MIR SINE MIR -55 207 65 * 921 175 13 0 chrX 42799851 42800005 -119799925 + MER5A DNA MER1_type 12 167 -22 229 319 14 14 chrX 42800116 42800185 -119799745 - L2 LINE L2 -4 3268 3200 244 272 9 70 chrX 42800520 42800634 -119799296 + L3 LINE CR1 1466 1572 -5 207 0 0 0 chrX 42801596 42801619 -119798311 + (TG)n Simple_repeat Simple_repeat 2 24 0 376 225 171 8 chrX 42802396 42802525 -119797405 - MIR SINE MIR -49 213 64 225 260 0 0 chrX 42803499 42803549 -119796381 + GA-rich Low_complexity Low_complexity 1 50 0 440 272 15 37 chrX 42803851 42803987 -119795943 - MIR SINE MIR -74 188 56 1348 176 0 14 chrX 42804222 42804444 -119795486 - MER20 DNA MER1_type 0 219 1 2019 131 3 34 chrX 42804483 42804804 -119795126 + AluJo SINE Alu 1 311 -1 435 236 77 112 chrX 42804804 42805037 -119794893 + MIR SINE MIR 22 246 -16 1644 67 0 0 chrX 42806803 42806997 -119792933 - AluSc SINE Alu -11 298 105 507 121 0 0 chrX 42806997 42807063 -119792867 - AluS SINE Alu -245 67 2 424 239 73 0 chrX 42807403 42807512 -119792418 - L2 LINE L2 -4 3309 3193 279 0 0 0 chrX 42807885 42807916 -119792014 + (GA)n Simple_repeat Simple_repeat 1 31 0 451 371 26 0 chrX 42808327 42808478 -119791452 - L2 LINE L2 -16 3256 3102 1133 160 27 32 chrX 42808712 42808931 -119790999 + MLT1C LTR MaLR 8 225 -242 * 1419 178 14 31 chrX 42808928 42809214 -119790716 + MLT1C LTR MaLR 187 467 0 2503 224 60 73 chrX 42809214 42809628 -119790302 + MLT1C-int LTR MaLR 1 419 -952 1153 194 54 132 chrX 42809628 42810051 -119789879 - MLT1B LTR MaLR 0 390 1 2503 224 60 73 chrX 42810051 42810739 -119789191 + MLT1C-int LTR MaLR 419 1076 -295 2577 23 0 17 chrX 42810739 42811040 -119788890 - AluY SINE Alu -15 296 1 2503 224 60 73 chrX 42811040 42811333 -119788597 + MLT1C-int LTR MaLR 1076 1371 0 1999 181 20 103 chrX 42811335 42811842 -119788088 + MLT1C LTR MaLR 3 467 0 2178 156 16 16 chrX 42812075 42812440 -119787490 + MLT1A1 LTR MaLR 1 365 0 2191 176 134 13 chrX 42812440 42812888 -119787042 + MLT1A1-int LTR MaLR 1 502 -1233 1930 261 68 18 chrX 42812885 42813455 -119786475 + L1M3b LINE L1 1 599 -5682 * 9045 149 20 33 chrX 42813587 42814280 -119785650 + L1MA7 LINE L1 3656 4357 -1934 1546 156 0 4 chrX 42814280 42814517 -119785413 - MER46A DNA MER2_type 0 236 1 9045 149 20 33 chrX 42814517 42815192 -119784738 + L1MA7 LINE L1 4357 5039 -1252 2254 149 6 43 chrX 42815192 42815541 -119784389 + MER1B DNA MER1_type 2 337 0 9045 149 20 33 chrX 42815541 42816851 -119783079 + L1MA7 LINE L1 5039 6289 -2 310 155 43 6 chrX 42816851 42816964 -119782966 + Charlie5 DNA MER1_type 2378 2530 -82 842 222 62 31 chrX 42816964 42817189 -119782741 + MLT1A1-int LTR MaLR 501 732 -639 413 207 12 0 chrX 42817292 42817374 -119782556 + MLT1A1-int LTR MaLR 682 764 -971 2092 211 53 18 chrX 42817524 42817617 -119782313 + MLT1A1-int LTR MaLR 1269 1357 -378 1595 177 174 19 chrX 42817617 42817979 -119781951 - MER47B DNA MER2_type 0 418 1 2092 211 53 18 chrX 42817979 42818335 -119781595 + MLT1A1-int LTR MaLR 1357 1734 -1 1431 172 23 19 chrX 42818378 42818634 -119781296 + MLT1A1 LTR MaLR 109 365 0 402 268 89 0 chrX 42819024 42819147 -119780783 + MER94 DNA DNA 1 134 0 313 350 60 8 chrX 42819298 42819415 -119780515 + MIR SINE MIR 22 144 -64 485 302 49 54 chrX 42819420 42819625 -119780305 - L3 LINE CR1 -2 1575 1372 303 346 75 37 chrX 42819620 42819834 -119780096 + L3 LINE CR1 1355 1576 -1 * 340 240 180 0 chrX 42821974 42822074 -119777856 - L2 LINE L2 0 3313 3196 431 310 16 16 chrX 42822274 42822403 -119777527 + MIR SINE MIR 8 136 -126 960 295 8 8 chrX 42823059 42823313 -119776617 - MIR SINE MIR -3 259 6 342 0 0 0 chrX 42824955 42824993 -119774937 + (CA)n Simple_repeat Simple_repeat 2 39 0 5186 192 60 13 chrX 42825385 42826378 -119773552 + MER45B DNA AcHobo 1 1040 0 432 269 19 9 chrX 42827126 42827234 -119772696 + L2 LINE L2 2688 2796 -518 930 249 5 33 chrX 42827597 42827810 -119772120 + Charlie8 DNA MER1_type 27 233 -2184 342 98 0 0 chrX 42827884 42827935 -119771995 + (CA)n Simple_repeat Simple_repeat 2 52 0 238 258 0 16 chrX 42828777 42828839 -119771091 + L3 LINE CR1 435 495 -1082 5650 140 13 42 chrX 42829140 42829935 -119769995 + L1MC2 LINE L1 5427 6191 -153 312 27 0 0 chrX 42829935 42829972 -119769958 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5650 140 13 42 chrX 42829972 42830117 -119769813 + L1MC2 LINE L1 6191 6339 -5 225 0 0 0 chrX 42830553 42830578 -119769352 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2294 41 21 14 chrX 42831767 42832058 -119767872 + AluY SINE Alu 1 293 -18 1604 164 50 14 chrX 42833396 42833677 -119766253 - AluJo SINE Alu -21 291 1 569 159 0 0 chrX 42834198 42834286 -119765644 + MIR SINE MIR 61 148 -114 310 225 281 0 chrX 42834431 42834520 -119765410 + MER81 DNA DNA 1 114 0 703 268 81 31 chrX 42834740 42835061 -119764869 - L1MC4a LINE L1 -1831 5977 5641 306 242 0 101 chrX 42835388 42835487 -119764443 + MIR SINE MIR 20 108 -154 299 294 49 35 chrX 42835590 42835733 -119764197 - MIR3 SINE MIR -21 187 43 412 238 217 22 chrX 42836655 42836824 -119763106 - MIR SINE MIR -54 208 6 2003 141 69 24 chrX 42837230 42837563 -119762367 - MER7A DNA MER2_type 0 346 1 219 69 0 0 chrX 42838066 42838095 -119761835 + (TG)n Simple_repeat Simple_repeat 1 29 0 297 131 0 0 chrX 42838095 42838156 -119761774 + (GA)n Simple_repeat Simple_repeat 2 62 0 271 340 30 0 chrX 42838590 42838690 -119761240 - MIR SINE MIR -8 254 152 21 82 0 0 chrX 42838941 42838990 -119760940 + AT_rich Low_complexity Low_complexity 1 49 0 244 286 86 73 chrX 42839026 42839195 -119760735 - MIR SINE MIR -59 149 16 456 307 70 42 chrX 42840659 42840874 -119759056 - MIR SINE MIR -38 224 4 395 275 170 44 chrX 42841618 42841847 -119758083 + MIR SINE MIR 2 259 -3 2794 202 30 56 chrX 42844986 42845595 -119754335 - MLT1E LTR MaLR 0 593 1 4938 186 60 28 chrX 42845847 42846062 -119753868 - L1MD2 LINE L1 -4 6355 6148 297 0 0 0 chrX 42846062 42846095 -119753835 + (TG)n Simple_repeat Simple_repeat 2 34 0 4938 186 60 28 chrX 42846095 42846645 -119753285 - L1MD2 LINE L1 -211 6148 5533 7188 174 10 1 chrX 42846645 42848687 -119751243 - L1PA14 LINE L1 -2 6159 4104 4938 186 60 28 chrX 42848687 42849140 -119750790 - L1MD2 LINE L1 -826 5533 5096 234 265 0 0 chrX 42849219 42849287 -119750643 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 209 57 29 0 chrX 42849543 42849578 -119750352 + (TA)n Simple_repeat Simple_repeat 1 36 0 233 108 15 62 chrX 42849677 42849742 -119750188 + LTR66 LTR ERVL 394 455 -155 206 316 0 0 chrX 42849998 42850055 -119749875 + G-rich Low_complexity Low_complexity 1 57 0 291 28 0 0 chrX 42850396 42850432 -119749498 + (TG)n Simple_repeat Simple_repeat 2 37 0 214 240 13 67 chrX 42852068 42852143 -119747787 + L2 LINE L2 3200 3270 -2 403 250 0 121 chrX 42853055 42853265 -119746665 - MIR SINE MIR -45 163 33 461 296 0 85 chrX 42853811 42854000 -119745930 + MIR3 SINE MIR 10 182 -26 183 374 24 37 chrX 42854016 42854262 -119745668 - L2 LINE L2 -210 3062 2820 411 333 36 5 chrX 42855829 42856024 -119743906 - L2 LINE L2 -2 3311 3111 297 284 9 9 chrX 42856067 42856183 -119743747 - L1MC4a LINE L1 -1340 6468 6353 1564 208 60 57 chrX 42856194 42856742 -119743188 - L1MC4 LINE L1 -7 8035 7486 756 280 49 12 chrX 42856742 42857092 -119742838 - L2 LINE L2 -258 3055 2698 1923 81 24 0 chrX 42857101 42857348 -119742582 + L1PA10 LINE L1 5904 6156 -12 214 182 0 0 chrX 42857361 42857405 -119742525 + A-rich Low_complexity Low_complexity 1 44 0 1797 241 69 14 chrX 42857537 42858030 -119741900 - HAL1 LINE L1 -172 2335 1816 1340 236 74 7 chrX 42858025 42858458 -119741472 - HAL1 LINE L1 -941 1566 1105 * 1789 231 45 105 chrX 42858467 42859198 -119740732 - MER21B LTR ERV1 -149 714 28 2179 98 27 7 chrX 42859283 42859579 -119740351 - L1PA16 LINE L1 -10 6156 5855 3119 231 72 43 chrX 42859587 42859869 -119740061 - HAL1 LINE L1 -1434 1073 800 2597 238 20 40 chrX 42859869 42860474 -119739456 - MLT1E LTR MaLR 0 593 1 3119 231 72 43 chrX 42860474 42860660 -119739270 - HAL1 LINE L1 -1707 800 621 2006 128 0 30 chrX 42860660 42860965 -119738965 + AluSg SINE Alu 1 296 -14 3119 231 72 43 chrX 42860965 42861417 -119738513 - HAL1 LINE L1 -1886 621 126 310 273 106 25 chrX 42861490 42861651 -119738279 - L2 LINE L2 -588 2726 2553 351 313 0 0 chrX 42861905 42862001 -119737929 - MIR SINE MIR -12 250 155 1801 197 27 32 chrX 42862664 42863040 -119736890 - MLT1A2 LTR MaLR 0 374 1 1179 338 165 27 chrX 42863971 42865282 -119734648 - L2 LINE L2 0 3272 1782 256 253 11 35 chrX 42865299 42865386 -119734544 + Charlie7 DNA MER1_type 601 685 -1927 875 275 164 30 chrX 42866691 42867087 -119732843 - MLT1J2 LTR MaLR -1 449 1 15804 38 2 1 chrX 42867128 42870199 -119729731 - L1PA5 LINE L1 0 6154 3081 268 180 60 60 chrX 42870199 42870299 -119729631 + L1MC/D LINE L1 5770 5869 -1939 21 57 0 0 chrX 42870581 42870616 -119729314 + AT_rich Low_complexity Low_complexity 1 35 0 281 312 10 85 chrX 42870655 42870854 -119729076 - L2 LINE L2 -954 2360 2177 389 219 0 0 chrX 42871018 42871091 -119728839 - MER5C DNA MER1_type -248 76 4 245 306 187 14 chrX 42871117 42871326 -119728604 - L2 LINE L2 -1156 2158 1914 253 258 0 0 chrX 42871381 42871443 -119728487 - MIR SINE MIR -15 247 186 2127 91 17 3 chrX 42872058 42872345 -119727585 + AluSg SINE Alu 1 291 -19 535 217 28 0 chrX 42872916 42873022 -119726908 + MIR3 SINE MIR 63 171 -37 962 186 0 0 chrX 42873146 42873318 -119726612 + MSTB1 LTR MaLR 261 432 0 805 191 71 38 chrX 42874683 42874866 -119725064 + MER5A DNA MER1_type 1 189 0 267 271 71 12 chrX 42874866 42874951 -119724979 + MIR SINE MIR 9 98 -164 186 133 0 0 chrX 42875040 42875070 -119724860 + (TG)n Simple_repeat Simple_repeat 2 31 0 461 233 158 8 chrX 42875076 42875209 -119724721 - MIR SINE MIR -92 170 18 286 207 161 0 chrX 42875214 42875301 -119724629 + MIR SINE MIR 101 201 -61 347 220 44 33 chrX 42875990 42876081 -119723849 - L2 LINE L2 0 3272 3181 1054 302 118 9 chrX 42876182 42876813 -119723117 - L2 LINE L2 -4 3309 2608 214 358 28 98 chrX 42877428 42877682 -119722248 - L2 LINE L2 -8 3264 3029 634 309 113 43 chrX 42877691 42878018 -119721912 - L2 LINE L2 0 3272 2923 399 301 27 27 chrX 42878683 42878869 -119721061 - L1ME3A LINE L1 -15 6155 5970 21 57 0 0 chrX 42878963 42878998 -119720932 + AT_rich Low_complexity Low_complexity 1 35 0 2003 236 75 2 chrX 42879025 42879568 -119720362 - L1ME3A LINE L1 -265 5905 5323 576 347 144 5 chrX 42879703 42880106 -119719824 - L2 LINE L2 -586 2728 2270 285 183 0 0 chrX 42880106 42880166 -119719764 + (TG)n Simple_repeat Simple_repeat 2 61 0 1303 141 28 14 chrX 42880294 42880507 -119719423 - MER20 DNA MER1_type 0 219 4 248 227 15 15 chrX 42880576 42880642 -119719288 + (TA)n Simple_repeat Simple_repeat 2 67 0 308 364 68 14 chrX 42880642 42880922 -119719008 - L2 LINE L2 -1089 2225 1931 233 279 121 24 chrX 42881073 42881238 -119718692 + L2 LINE L2 3128 3308 -5 203 214 24 0 chrX 42881516 42881558 -119718372 - L2 LINE L2 -15 3257 3215 333 267 199 0 chrX 42881933 42882064 -119717866 + MIR SINE MIR 51 207 -55 303 280 0 27 chrX 42882962 42883037 -119716893 - L2 LINE L2 -13 3300 3228 343 312 24 58 chrX 42884935 42885140 -119714790 - L3 LINE CR1 -608 969 772 218 207 241 0 chrX 42885139 42885197 -119714733 - L2 LINE L2 0 3272 3201 * 565 249 139 0 chrX 42885360 42885525 -119714405 + MIR SINE MIR 65 252 -10 569 289 99 0 chrX 42885843 42885995 -119713935 - MIR SINE MIR -92 170 4 621 322 157 15 chrX 42886024 42886431 -119713499 - L2 LINE L2 -932 2382 1918 6469 210 91 38 chrX 42886436 42888247 -119711683 + L1MD2 LINE L1 19 1732 -4808 2283 158 8 15 chrX 42888247 42888639 -119711291 + MLT1B LTR MaLR 1 389 -1 6469 210 91 38 chrX 42888639 42888746 -119711184 + L1MD2 LINE L1 1732 1832 -4708 1984 133 136 16 chrX 42888746 42889128 -119710802 + MSTA LTR MaLR 1 428 0 6469 210 91 38 chrX 42889128 42889830 -119710100 + L1MD2 LINE L1 1832 2495 -4045 1555 204 77 0 chrX 42889830 42890169 -119709761 + MLT1A1 LTR MaLR 1 365 0 6469 210 91 38 chrX 42890169 42890319 -119709611 + L1MD2 LINE L1 2495 2636 -3904 2241 140 34 10 chrX 42890319 42890704 -119709226 - L1PA16 LINE L1 -1 6165 5772 6469 210 91 38 chrX 42890704 42890845 -119709085 + L1MD2 LINE L1 2636 3229 -3311 1924 213 61 28 chrX 42890843 42891417 -119708513 + L1MD2 LINE L1 4190 4782 -1758 * 21 0 0 0 chrX 42891483 42891504 -119708426 + AT_rich Low_complexity Low_complexity 1 21 0 551 224 156 24 chrX 42891602 42891897 -119708033 + L1MD2 LINE L1 4752 5085 -1455 * 1774 212 26 6 chrX 42891868 42892468 -119707462 + L1MD2 LINE L1 6077 6740 -13 223 289 52 0 chrX 42892532 42892629 -119707301 - L2 LINE L2 -1662 1652 1551 6322 119 53 51 chrX 42892645 42893877 -119706053 - MER52C LTR ERV1 -44 1234 1 203 196 22 0 chrX 42893964 42894010 -119705920 + GA-rich Low_complexity Low_complexity 5 51 0 494 345 88 42 chrX 42894047 42894401 -119705529 - L2 LINE L2 -2363 951 582 525 233 8 8 chrX 42894614 42894734 -119705196 - MER94 DNA DNA -3 131 12 527 362 99 15 chrX 42894749 42895161 -119704769 - L3 LINE CR1 -947 630 184 866 309 16 82 chrX 42895286 42895665 -119704265 + L2 LINE L2 2916 3269 -3 201 258 155 31 chrX 42896199 42896296 -119703634 + MIR3 SINE MIR 93 201 -7 22 35 0 0 chrX 42896825 42896854 -119703076 + AT_rich Low_complexity Low_complexity 1 29 0 3669 181 18 19 chrX 42896854 42897643 -119702287 - L1MA9 LINE L1 -38 6274 5487 730 319 4 9 chrX 42899551 42899783 -119700147 + MIR SINE MIR 29 259 -3 239 299 205 16 chrX 42899835 42899962 -119699968 + MIR SINE MIR 95 245 -17 560 282 5 46 chrX 42900722 42900808 -119699122 + MIR SINE MIR 2 90 -172 2714 126 27 2 chrX 42900808 42901222 -119698708 + MSTA LTR MaLR 3 426 -2 560 282 5 46 chrX 42901222 42901330 -119698600 + MIR SINE MIR 90 188 -74 579 271 90 0 chrX 42901356 42901522 -119698408 - MIR SINE MIR -38 224 44 558 271 109 26 chrX 42901673 42901902 -119698028 - MIR SINE MIR 0 262 15 193 259 37 19 chrX 42903144 42903198 -119696732 - L2 LINE L2 -82 3190 3136 866 102 29 0 chrX 42903359 42903496 -119696434 + L1MA9 LINE L1 6172 6312 0 672 285 241 22 chrX 42903621 42903986 -119695944 - L2 LINE L2 -13 3300 2856 742 339 52 47 chrX 42903995 42904105 -119695825 - L2 LINE L2 -17 3296 3188 2609 96 74 20 chrX 42904105 42904511 -119695419 - MSTA LTR MaLR 0 428 1 742 339 52 47 chrX 42904511 42904904 -119695026 - L2 LINE L2 -125 3188 2798 1975 50 0 0 chrX 42904904 42905144 -119694786 + L1PA5 LINE L1 5902 6141 -13 742 339 52 47 chrX 42905144 42905577 -119694353 - L2 LINE L2 -515 2798 2355 426 39 0 0 chrX 42905603 42905655 -119694275 + (TG)n Simple_repeat Simple_repeat 1 52 0 188 367 102 20 chrX 42905753 42905900 -119694030 + L2 LINE L2 2813 2971 -343 214 162 0 0 chrX 42906639 42906676 -119693254 + CT-rich Low_complexity Low_complexity 2 38 0 506 243 27 61 chrX 42907172 42907320 -119692610 + L2 LINE L2 3171 3313 0 828 160 134 53 chrX 42908641 42908828 -119691102 + AluJo SINE Alu 86 287 -25 1040 241 63 101 chrX 42909418 42909885 -119690045 - MLT1G1 LTR MaLR -29 520 1 259 210 12 25 chrX 42909888 42909969 -119689961 + CT-rich Low_complexity Low_complexity 4 83 0 345 193 32 12 chrX 42909975 42910093 -119689837 - AluSp/q SINE Alu 0 303 225 578 294 89 28 chrX 42910277 42910559 -119689371 + L2 LINE L2 3012 3310 -3 253 309 168 7 chrX 42911042 42911191 -119688739 + L2 LINE L2 2554 2726 -588 256 133 0 150 chrX 42911333 42911393 -119688537 - L2 LINE L2 0 3313 3263 236 320 202 39 chrX 42911637 42911847 -119688083 - L2 LINE L2 -338 2976 2802 2443 139 31 21 chrX 42911847 42912271 -119687659 + MSTA LTR MaLR 1 428 0 236 320 202 39 chrX 42912271 42912416 -119687514 - L2 LINE L2 -512 2802 2563 267 320 96 47 chrX 42912504 42912848 -119687082 - L2 LINE L2 -1409 1905 1545 516 313 36 16 chrX 42912876 42913068 -119686862 + MIR SINE MIR 11 206 -56 528 253 44 38 chrX 42913657 42913755 -119686175 + MIR SINE MIR 48 149 -113 1799 180 65 31 chrX 42913755 42914138 -119685792 - MSTD LTR MaLR 0 396 1 528 253 44 38 chrX 42914138 42914197 -119685733 + MIR SINE MIR 149 206 -56 377 293 0 0 chrX 42914262 42914344 -119685586 - L2 LINE L2 0 3272 3191 270 189 82 74 chrX 42914582 42914704 -119685226 - LTR67 LTR ERVL -21 536 414 1334 353 63 32 chrX 42914715 42915752 -119684178 - L2 LINE L2 -493 2821 1753 356 309 8 0 chrX 42915830 42915956 -119683974 + L1M4b LINE L1 105 231 -6628 228 191 32 63 chrX 42916356 42916419 -119683511 + L1M4b LINE L1 363 423 -6436 2361 209 51 30 chrX 42916588 42917210 -119682720 + L1M4b LINE L1 977 1611 -5248 736 8 57 8 chrX 42917464 42917586 -119682344 + (TA)n Simple_repeat Simple_repeat 2 129 0 22 70 0 0 chrX 42921665 42921708 -119678222 + AT_rich Low_complexity Low_complexity 1 43 0 691 246 32 37 chrX 42922178 42922403 -119677527 - MIR SINE MIR -30 232 2 269 228 11 76 chrX 42922403 42922491 -119677439 - MIR SINE MIR -74 188 107 237 324 0 36 chrX 42923434 42923545 -119676385 + MIR SINE MIR 104 210 -52 198 103 0 0 chrX 42924141 42924170 -119675760 + (A)n Simple_repeat Simple_repeat 1 29 0 181 254 0 42 chrX 42924174 42924245 -119675685 + L2 LINE L2 2918 2985 -287 383 347 42 5 chrX 42924533 42924726 -119675204 + L2 LINE L2 2586 2785 -529 187 276 236 57 chrX 42924763 42924886 -119675044 + L2 LINE L2 2912 3056 -216 180 125 0 0 chrX 42925472 42925504 -119674426 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 611 214 0 71 chrX 42926059 42926199 -119673731 - MER91B DNA MER1_type -60 130 1 225 216 45 114 chrX 42926885 42926973 -119672957 - MER91A DNA MER1_type -2 194 113 223 341 12 24 chrX 42927084 42927169 -119672761 - MIR SINE MIR -96 166 83 180 111 0 0 chrX 42928179 42928206 -119671724 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 203 208 75 19 chrX 42928451 42928504 -119671426 + MIR3 SINE MIR 151 206 -2 1102 88 17 17 chrX 42930558 42930739 -119669191 + L1PA14 LINE L1 5979 6159 -2 6250 200 53 18 chrX 42930751 42932710 -119667220 - L1MDa LINE L1 -3580 2960 933 300 276 0 66 chrX 42932745 42932821 -119667109 - L1MDa LINE L1 -6343 197 127 1086 227 59 0 chrX 42932828 42933066 -119666864 - L1MDa LINE L1 -5452 1088 837 575 273 12 12 chrX 42933072 42933237 -119666693 - L1MDa LINE L1 -6357 183 19 591 174 14 14 chrX 42933247 42933391 -119666539 + L1MB8 LINE L1 6033 6176 -2 2186 116 0 17 chrX 42933425 42933727 -119666203 + AluSx SINE Alu 1 297 -15 371 377 52 5 chrX 42933921 42934112 -119665818 - MIR SINE MIR -6 256 57 255 306 102 48 chrX 42934129 42934315 -119665615 + L2 LINE L2 3118 3313 0 10113 224 64 39 chrX 42934445 42939284 -119660646 - L1MCb LINE L1 -886 5678 600 800 273 39 58 chrX 42939283 42939881 -119660049 - L1M4b LINE L1 -4080 3058 2473 * 2455 244 24 19 chrX 42940005 42940235 -119659695 - L1M4b LINE L1 -4543 2416 2189 2404 97 0 0 chrX 42940235 42940535 -119659395 + AluSc SINE Alu 1 300 -9 2455 244 24 19 chrX 42940535 42940556 -119659374 - L1M4b LINE L1 -4770 2189 2170 216 0 0 0 chrX 42940556 42940580 -119659350 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2455 244 24 19 chrX 42940580 42941205 -119658725 - L1M4b LINE L1 -4789 2170 1541 488 211 56 7 chrX 42942369 42942511 -119657419 + L1ME4a LINE L1 5956 6104 -17 256 283 0 0 chrX 42942684 42942737 -119657193 + L2 LINE L2 3228 3280 -33 189 0 0 0 chrX 42943371 42943392 -119656538 + (T)n Simple_repeat Simple_repeat 1 21 0 327 130 0 0 chrX 42943843 42943897 -119656033 + (T)n Simple_repeat Simple_repeat 1 54 0 362 250 24 0 chrX 42944268 42944436 -119655494 + CT-rich Low_complexity Low_complexity 2 173 0 475 234 29 0 chrX 42944481 42944652 -119655278 + CT-rich Low_complexity Low_complexity 2 177 0 296 200 0 0 chrX 42944943 42945013 -119654917 + L1MA4 LINE L1 6226 6295 -5 30 0 0 0 chrX 42945013 42945043 -119654887 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chrX 42945260 42945299 -119654631 + AT_rich Low_complexity Low_complexity 1 39 0 956 207 34 0 chrX 42945751 42945988 -119653942 - L1MB7 LINE L1 -19 6165 5921 342 67 0 0 chrX 42946978 42947023 -119652907 + (T)n Simple_repeat Simple_repeat 1 45 0 216 0 0 0 chrX 42949839 42949863 -119650067 + (TG)n Simple_repeat Simple_repeat 1 24 0 193 339 46 18 chrX 43150045 43150154 -119449776 - MIR SINE MIR -72 190 79 2134 124 3 0 chrX 43151114 43151421 -119448509 - AluSc SINE Alu -1 308 1 296 256 0 22 chrX 43152179 43152269 -119447661 + MIR SINE MIR 141 228 -34 321 96 96 0 chrX 43152846 43152898 -119447032 + L1MB7 LINE L1 6100 6156 -28 2193 124 0 3 chrX 43153712 43154019 -119445911 + AluSq SINE Alu 3 308 -5 1743 166 3 10 chrX 43154517 43154813 -119445117 + AluJo SINE Alu 1 294 -18 189 0 0 0 chrX 43154813 43154834 -119445096 + (GA)n Simple_repeat Simple_repeat 2 22 0 336 108 154 0 chrX 43155842 43155907 -119444023 + FRAM/FAM SINE Alu 2 76 -90 1100 112 12 12 chrX 43155907 43156077 -119443853 - AluSg/x SINE Alu -6 304 135 246 158 0 0 chrX 43156822 43156873 -119443057 + T-rich Low_complexity Low_complexity 1 52 0 3999 18 0 0 chrX 43156873 43157326 -119442604 - L1PA3 LINE L1 0 6155 5703 563 193 88 78 chrX 43157447 43157639 -119442291 - AluJo SINE Alu -114 198 5 244 170 21 0 chrX 43157648 43157695 -119442235 - AluSg/x SINE Alu -169 133 86 911 178 131 0 chrX 43157695 43157886 -119442044 - AluJo SINE Alu -92 220 5 296 115 0 0 chrX 43157902 43157948 -119441982 - AluSg/x SINE Alu -177 123 84 889 157 112 20 chrX 43157948 43158145 -119441785 - AluJb SINE Alu -92 220 6 269 143 0 0 chrX 43158145 43158187 -119441743 - AluJo/FLAM SINE Alu -195 107 66 523 182 20 0 chrX 43158190 43158289 -119441641 + Alu SINE Alu 193 293 -18 1222 32 0 43 chrX 43158290 43158322 -119441608 + (GGGAA)n Simple_repeat Simple_repeat 1 207 0 1222 32 0 43 chrX 43158322 43158507 -119441423 + (GGGAA)n Simple_repeat Simple_repeat 3 179 0 900 148 0 22 chrX 43158583 43158765 -119441165 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 487 171 12 0 chrX 43158766 43158848 -119441082 + L1MD2 LINE L1 153 235 -6307 23 33 0 0 chrX 43159197 43159227 -119440703 + AT_rich Low_complexity Low_complexity 1 30 0 2146 102 0 0 chrX 43159238 43159512 -119440418 - AluSq SINE Alu -37 276 3 189 0 0 0 chrX 43160321 43160342 -119439588 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 930 50 100 0 chrX 43160342 43160462 -119439468 - AluY SINE Alu -179 132 1 2540 176 85 37 chrX 43160464 43160946 -119438984 - L1MD2 LINE L1 -534 5825 5368 1864 151 0 35 chrX 43160946 43161298 -119438632 - AluSx SINE Alu 0 312 1 2540 176 85 37 chrX 43161298 43161908 -119438022 - L1MD2 LINE L1 -991 5368 4675 2255 96 0 3 chrX 43161912 43162204 -119437726 - AluSx SINE Alu -21 291 1 260 283 45 65 chrX 43162343 43162590 -119437340 + L1M4 LINE L1 4882 5123 -1023 306 236 6 115 chrX 43162810 43162922 -119437008 + L1MD2 LINE L1 1566 1654 -4980 2194 123 0 0 chrX 43162922 43163230 -119436700 + AluSx SINE Alu 1 308 -4 306 236 6 115 chrX 43163230 43163291 -119436639 + L1MD2 LINE L1 1654 1720 -4914 1844 129 0 0 chrX 43163298 43163553 -119436377 + AluSq SINE Alu 35 289 -24 3592 193 86 35 chrX 43163561 43163803 -119436127 + L1MD2 LINE L1 5174 5402 -1455 249 0 0 68 chrX 43163803 43163847 -119436083 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3592 193 86 35 chrX 43163847 43163864 -119436066 + L1MD2 LINE L1 5402 5417 -1440 975 115 0 0 chrX 43163864 43164012 -119435918 + (TA)n Simple_repeat Simple_repeat 2 149 0 3592 193 86 35 chrX 43164012 43164315 -119435615 + L1MD2 LINE L1 5417 5703 -1154 1993 131 3 34 chrX 43164315 43164636 -119435294 + AluSx SINE Alu 2 312 0 3592 193 86 35 chrX 43164636 43165137 -119434793 + L1MD2 LINE L1 5703 6335 -522 2039 117 0 68 chrX 43165137 43165461 -119434469 + AluSx SINE Alu 1 302 -10 3592 193 86 35 chrX 43165461 43165715 -119434215 + L1MD2 LINE L1 6335 6575 -282 2055 139 3 0 chrX 43165715 43166017 -119433913 - AluSx SINE Alu -9 303 1 27 29 0 0 chrX 43166055 43166089 -119433841 + AT_rich Low_complexity Low_complexity 1 34 0 423 117 0 0 chrX 43166889 43166949 -119432981 + AluS SINE Alu 3 62 -256 575 146 27 180 chrX 43166953 43167181 -119432749 - LOR1-int LTR ERV1 -2378 2493 1366 2141 100 3 6 chrX 43167181 43167492 -119432438 + AluY SINE Alu 1 310 -1 1013 140 6 0 chrX 43167492 43167649 -119432281 + AluSg/x SINE Alu 132 289 -21 207 0 0 0 chrX 43167655 43167678 -119432252 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2742 189 71 34 chrX 43167682 43168396 -119431534 - LOR1-int LTR ERV1 -2561 2310 1570 958 215 31 25 chrX 43168396 43168711 -119431219 - MER34 LTR ERV1 -162 380 34 2130 132 0 3 chrX 43169230 43169541 -119430389 + AluSx SINE Alu 1 310 -2 248 102 20 0 chrX 43169544 43169593 -119430337 + (GAAAA)n Simple_repeat Simple_repeat 3 52 0 1711 136 65 4 chrX 43169900 43170179 -119429751 - AluJb SINE Alu -12 300 5 1825 224 27 10 chrX 43170179 43170589 -119429341 - MER65C LTR ERV1 -26 435 19 1930 127 11 0 chrX 43170599 43170883 -119429047 + AluSx SINE Alu 10 296 -16 1181 189 12 62 chrX 43170995 43171345 -119428585 + MER31A LTR ERV1 2 447 -38 844 203 68 0 chrX 43171348 43171511 -119428419 - FAM SINE Alu 0 175 2 986 140 0 0 chrX 43171555 43171698 -119428232 - AluJb SINE Alu -169 143 1 245 331 41 32 chrX 43171903 43172217 -119427713 - L1MEd LINE L1 -4888 1231 915 2145 117 3 0 chrX 43172229 43172553 -119427377 - AluSx SINE Alu 0 312 1 2097 137 3 0 chrX 43172553 43172853 -119427077 - AluSq SINE Alu -10 303 3 813 276 14 5 chrX 43173599 43173820 -119426110 - MIR SINE MIR -28 234 12 1588 193 7 17 chrX 43173829 43174130 -119425800 + AluJo SINE Alu 5 302 -10 1826 173 7 0 chrX 43174515 43174822 -119425108 - AluJb SINE Alu -3 309 1 325 221 63 113 chrX 43174878 43175100 -119424830 - HAL1 LINE L1 -1046 1461 1251 1322 160 10 0 chrX 43175117 43175323 -119424607 - AluSg/x SINE Alu -14 296 89 2305 105 0 0 chrX 43175952 43176256 -119423674 + AluSc SINE Alu 1 304 -5 41228 65 6 2 chrX 43176811 43182038 -119417892 + L1PA5 LINE L1 1 5248 -898 5304 43 0 3 chrX 43182038 43182665 -119417265 + L1PA5 LINE L1 5524 6151 -3 226 287 74 19 chrX 43182667 43182775 -119417155 + MIR SINE MIR 84 197 -65 2976 121 50 4 chrX 43182869 43183324 -119416606 - Tigger1 DNA MER2_type 0 2418 1943 * 5339 135 65 52 chrX 43183317 43184149 -119415781 - Tigger1 DNA MER2_type -1377 1041 192 1442 108 14 5 chrX 43184149 43184362 -119415568 + L1MA2 LINE L1 6089 6303 -1 5339 135 65 52 chrX 43184362 43184557 -119415373 - Tigger1 DNA MER2_type -2226 192 1 2137 68 61 4 chrX 43185124 43185403 -119414527 - AluY SINE Alu -16 295 1 399 217 0 0 chrX 43186333 43186416 -119413514 - L1ME LINE L1 -424 5697 5615 394 246 93 8 chrX 43186418 43186536 -119413394 - L2 LINE L2 -2 3311 3184 1807 154 20 0 chrX 43186555 43186848 -119413082 - AluJo SINE Alu -13 299 1 1980 124 0 4 chrX 43187323 43187597 -119412333 + AluSx SINE Alu 14 286 -26 198 103 0 0 chrX 43187597 43187626 -119412304 + (TA)n Simple_repeat Simple_repeat 1 29 0 3593 185 66 48 chrX 43187626 43188223 -119411707 + L1MD2 LINE L1 4678 5263 -1096 1862 146 3 23 chrX 43188223 43188524 -119411406 + AluSx SINE Alu 13 307 -5 3593 185 66 48 chrX 43188524 43189283 -119410647 + L1MD2 LINE L1 5263 6075 -284 2107 134 0 0 chrX 43189285 43189575 -119410355 - AluSx SINE Alu -22 290 1 2076 131 0 0 chrX 43190436 43190756 -119409174 + AluSp SINE Alu 2 321 0 2375 100 3 0 chrX 43191794 43192104 -119407826 - AluSp SINE Alu -2 311 1 531 224 9 14 chrX 43192380 43192598 -119407332 + L1MD2 LINE L1 6067 6344 -15 1476 115 20 0 chrX 43192612 43192812 -119407118 - AluJo SINE Alu -22 290 87 860 207 100 40 chrX 43192872 43193029 -119406901 + L1MEd LINE L1 894 1040 -5079 2320 108 10 0 chrX 43193029 43193334 -119406596 + AluSq SINE Alu 1 308 -5 860 207 100 40 chrX 43193334 43193476 -119406454 + L1MEd LINE L1 1040 1211 -4908 5286 176 79 70 chrX 43193870 43194025 -119405905 + L1M4 LINE L1 15 167 -6375 2211 78 18 7 chrX 43194025 43194301 -119405629 + AluSx SINE Alu 12 293 -19 1031 45 0 8 chrX 43194301 43194435 -119405495 + (GGAA)n Simple_repeat Simple_repeat 3 135 0 5286 176 79 70 chrX 43194441 43194765 -119405165 + L1M4 LINE L1 167 487 -6055 2350 105 0 25 chrX 43194765 43195080 -119404850 + AluSc SINE Alu 1 307 -2 5286 176 79 70 chrX 43195080 43195482 -119404448 + L1M4 LINE L1 487 884 -5658 1918 126 7 34 chrX 43195482 43195638 -119404292 - AluJb SINE Alu -26 286 127 216 0 0 0 chrX 43195638 43195662 -119404268 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2382 52 0 11 chrX 43195662 43195949 -119403981 - AluY SINE Alu -27 284 1 1918 126 7 34 chrX 43195949 43196085 -119403845 - AluJb SINE Alu -183 129 1 5286 176 79 70 chrX 43196085 43196326 -119403604 + L1M4 LINE L1 884 1155 -5387 2248 127 0 0 chrX 43196326 43196634 -119403296 - AluSx SINE Alu -4 308 1 5286 176 79 70 chrX 43196634 43196840 -119403090 + L1M4 LINE L1 1155 1358 -5184 1570 148 35 55 chrX 43196917 43197098 -119402832 - AluJo SINE Alu -16 296 121 2294 99 0 0 chrX 43197098 43197429 -119402501 + AluSx SINE Alu 1 331 0 1570 148 35 55 chrX 43197429 43197536 -119402394 - AluJo SINE Alu -191 121 13 361 261 18 0 chrX 43197626 43197737 -119402193 + L1M4 LINE L1 2334 2446 -4200 1208 180 174 47 chrX 43197738 43198055 -119401875 + MLT1A1 LTR MaLR 4 360 -5 572 137 29 10 chrX 43198092 43198194 -119401736 + L1MB7 LINE L1 4439 4542 -1604 * 1251 133 62 0 chrX 43198191 43198401 -119401529 + L1MB7 LINE L1 5821 6043 -141 1783 158 39 35 chrX 43198425 43198736 -119401194 - AluJo SINE Alu 0 312 1 1977 139 13 10 chrX 43199000 43199135 -119400795 + AluJb SINE Alu 1 134 -178 1945 100 0 76 chrX 43199135 43199475 -119400455 + AluSc SINE Alu 1 317 0 1977 139 13 10 chrX 43199475 43199552 -119400378 + AluJb SINE Alu 134 302 -10 500 153 47 0 chrX 43199552 43199637 -119400293 + AluJ/FRAM SINE Alu 214 302 -10 1939 140 0 4 chrX 43199654 43199954 -119399976 + AluJb SINE Alu 14 287 -25 306 0 0 0 chrX 43199962 43199996 -119399934 + (CA)n Simple_repeat Simple_repeat 2 35 0 333 244 70 0 chrX 43200016 43200102 -119399828 + L1MC/D LINE L1 5439 5530 -2278 548 295 75 18 chrX 43200103 43200381 -119399549 + L2 LINE L2 2879 3172 -141 1106 174 35 119 chrX 43200385 43200635 -119399295 - MER58B DNA MER1_type -2079 341 72 2078 97 62 0 chrX 43200635 43200925 -119399005 - AluSx SINE Alu -4 308 1 1662 141 51 14 chrX 43200927 43201203 -119398727 - AluJo SINE Alu -20 292 7 1106 174 35 119 chrX 43201203 43201293 -119398637 - MER58B DNA MER1_type -2349 71 27 549 200 61 9 chrX 43201304 43201419 -119398511 + L2 LINE L2 3193 3313 0 2010 128 3 3 chrX 43201423 43201720 -119398210 - AluSx SINE Alu -15 297 1 516 32 0 0 chrX 43202000 43202062 -119397868 + (TCC)n Simple_repeat Simple_repeat 1 62 0 241 234 21 32 chrX 43203871 43203965 -119395965 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 186 43 0 0 chrX 43204302 43204325 -119395605 + (CCCCAG)n Simple_repeat Simple_repeat 1 23 0 2204 90 3 16 chrX 43205669 43205979 -119393951 + AluSx SINE Alu 1 306 -6 2237 91 0 10 chrX 43206664 43206972 -119392958 + AluSx SINE Alu 1 305 -7 1067 93 0 0 chrX 43206972 43207112 -119392818 + AluSg/x SINE Alu 135 274 -38 914 73 40 7 chrX 43207118 43207269 -119392661 + GA-rich Low_complexity Low_complexity 2 157 0 1765 103 114 7 chrX 43207857 43208128 -119391802 + AluSg SINE Alu 1 300 -10 1163 111 12 0 chrX 43208128 43208290 -119391640 + AluSg/x SINE Alu 132 295 -15 243 0 0 0 chrX 43208654 43208681 -119391249 + (CA)n Simple_repeat Simple_repeat 1 27 0 355 264 28 22 chrX 43211363 43211541 -119388389 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 * 378 298 0 12 chrX 43211412 43211580 -119388350 + GA-rich Low_complexity Low_complexity 2 167 0 242 56 28 0 chrX 43214749 43214785 -119385145 + (TC)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chrX 43214785 43214805 -119385125 + (CA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chrX 43215268 43215288 -119384642 + (A)n Simple_repeat Simple_repeat 1 20 0 2268 92 0 10 chrX 43215299 43215602 -119384328 + AluSg SINE Alu 1 300 -10 671 267 64 11 chrX 43216658 43216845 -119383085 + MIR SINE MIR 59 255 -7 434 228 57 16 chrX 43217577 43217700 -119382230 - L2 LINE L2 -8 3305 3178 2151 122 0 0 chrX 43217702 43218006 -119381924 - AluSx SINE Alu -8 304 1 757 168 0 15 chrX 43218007 43218138 -119381792 - FLAM_A SINE Alu -4 129 1 1287 211 76 59 chrX 43218192 43218282 -119381648 - MER63B DNA MER1_type -634 428 341 1608 142 11 4 chrX 43218282 43218542 -119381388 - AluJb SINE Alu -15 297 36 1287 211 76 59 chrX 43218542 43218872 -119381058 - MER63B DNA MER1_type -721 341 1 351 333 33 13 chrX 43219037 43219187 -119380743 - MIR SINE MIR -69 193 41 256 193 0 18 chrX 43222118 43222175 -119377755 + GA-rich Low_complexity Low_complexity 2 57 0 1411 256 156 28 chrX 43222764 43222921 -119377009 - L2 LINE L2 -3 3310 3174 1540 167 51 0 chrX 43222921 43223197 -119376733 + AluJo SINE Alu 1 290 -22 1411 256 156 28 chrX 43223197 43223208 -119376722 - L2 LINE L2 -139 3174 3166 2357 78 0 0 chrX 43223208 43223501 -119376429 + AluSq SINE Alu 1 293 -20 1411 256 156 28 chrX 43223501 43224282 -119375648 - L2 LINE L2 -147 3166 2238 233 248 234 50 chrX 43225444 43225662 -119374268 - L2 LINE L2 -83 3230 2973 651 236 27 173 chrX 43226548 43226846 -119373084 - L2 LINE L2 -7 3306 3103 1594 171 77 0 chrX 43226846 43227132 -119372798 - AluJb SINE Alu -4 308 1 651 236 27 173 chrX 43227132 43227312 -119372618 - L2 LINE L2 -210 3103 2898 2098 125 3 0 chrX 43227420 43227715 -119372215 - AluSx SINE Alu -16 296 1 2176 85 0 28 chrX 43227715 43228034 -119371896 - AluSx SINE Alu -2 310 1 544 235 131 0 chrX 43228190 43228343 -119371587 + L1ME LINE L1 5470 5642 -528 2282 84 0 3 chrX 43228357 43228653 -119371277 + AluSx SINE Alu 1 295 -17 1026 162 0 32 chrX 43228876 43229061 -119370869 + AluJb SINE Alu 130 308 -4 1333 221 92 39 chrX 43229344 43229809 -119370121 + Charlie4a DNA MER1_type 1 490 -18 2292 84 0 0 chrX 43229809 43230105 -119369825 - AluSx SINE Alu -14 298 3 2238 96 3 0 chrX 43230155 43230447 -119369483 + AluSx SINE Alu 1 293 -19 813 216 106 26 chrX 43232405 43232434 -119367496 - L2 LINE L2 -338 2976 2951 2265 104 0 0 chrX 43232434 43232732 -119367198 + AluSx SINE Alu 1 298 -14 813 216 106 26 chrX 43232732 43232975 -119366955 - L2 LINE L2 -363 2951 2682 434 185 33 11 chrX 43232975 43233067 -119366863 + L1ME1 LINE L1 6062 6155 -11 956 211 0 0 chrX 43233104 43233284 -119366646 + AluJb SINE Alu 133 312 0 1644 205 57 54 chrX 43233459 43233845 -119366085 + MLT1B LTR MaLR 1 387 -3 203 338 0 0 chrX 43234732 43234806 -119365124 + (TG)n Simple_repeat Simple_repeat 1 74 0 459 125 0 0 chrX 43235301 43235373 -119364557 + (TG)n Simple_repeat Simple_repeat 2 73 0 2199 100 3 3 chrX 43236220 43236521 -119363409 + AluSp SINE Alu 1 301 -12 655 133 47 70 chrX 43237201 43237329 -119362601 - FRAM SINE Alu -7 169 45 585 268 32 21 chrX 43237428 43237618 -119362312 + MER91A DNA MER1_type 4 195 -1 1012 236 54 77 chrX 43237763 43238152 -119361778 + LTR37A LTR ERV1 6 345 -81 1952 133 0 7 chrX 43238152 43238453 -119361477 + AluJb SINE Alu 1 299 -13 1012 236 54 77 chrX 43238453 43238532 -119361398 + LTR37A LTR ERV1 345 424 -2 503 315 24 0 chrX 43238928 43239093 -119360837 + MIR SINE MIR 92 260 -2 248 287 61 26 chrX 43239361 43239476 -119360454 + MIR3 SINE MIR 64 182 -26 187 250 0 0 chrX 43239752 43239796 -119360134 + MIR3 SINE MIR 145 188 -20 807 265 146 58 chrX 43239888 43240374 -119359556 - MLT1K LTR MaLR 0 588 60 2294 97 3 0 chrX 43240376 43240685 -119359245 + AluSg SINE Alu 1 310 0 1509 160 106 0 chrX 43240689 43240971 -119358959 + AluJo SINE Alu 1 312 0 296 349 18 0 chrX 43241696 43241805 -119358125 + (CCCA)n Simple_repeat Simple_repeat 3 113 0 202 361 52 0 chrX 43241816 43241913 -119358017 - L2 LINE L2 -32 3240 3139 260 329 38 6 chrX 43241987 43242145 -119357785 - L2 LINE L2 -243 3029 2867 2170 105 7 7 chrX 43242157 43242463 -119357467 + AluSx SINE Alu 1 306 -6 2052 127 3 7 chrX 43242961 43243261 -119356669 + AluSx SINE Alu 1 299 -13 2290 80 3 0 chrX 43243711 43243999 -119355931 + AluSp SINE Alu 1 289 -24 186 43 0 0 chrX 43243999 43244022 -119355908 + (GA)n Simple_repeat Simple_repeat 2 24 0 1720 168 0 23 chrX 43244379 43244548 -119355382 - AluJo SINE Alu -10 302 142 2011 110 27 7 chrX 43244548 43244840 -119355090 - AluSx SINE Alu -14 298 1 1720 168 0 23 chrX 43244840 43244979 -119354951 - AluJo SINE Alu -170 142 1 333 143 18 0 chrX 43244979 43245035 -119354895 - L1M3 LINE L1 -744 5590 5534 1248 186 98 3 chrX 43245037 43245343 -119354587 - L1MC4a LINE L1 -1615 6193 5859 1113 67 0 0 chrX 43245343 43245478 -119354452 + AluSq/x SINE Alu 1 135 -178 1831 152 3 0 chrX 43245478 43245780 -119354150 + AluSx SINE Alu 1 303 -9 1190 229 39 10 chrX 43245780 43246086 -119353844 - L1MC4a LINE L1 -1939 5869 5555 405 0 0 0 chrX 43246271 43246316 -119353614 + (CA)n Simple_repeat Simple_repeat 1 45 0 206 234 0 0 chrX 43246335 43246382 -119353548 + MIR SINE MIR 98 144 -118 3053 160 44 23 chrX 43246496 43247059 -119352871 + MER90 LTR ERV1 1 575 0 311 337 47 1 chrX 43247160 43247280 -119352650 - MIR SINE MIR -65 143 30 1269 145 114 28 chrX 43247723 43247843 -119352087 + AluJo SINE Alu 1 109 -203 2153 75 7 36 chrX 43247843 43248149 -119351781 - AluSx SINE Alu -15 297 1 1269 145 114 28 chrX 43248149 43248283 -119351647 + AluJo SINE Alu 109 277 -35 2135 102 3 0 chrX 43248318 43248642 -119351288 + AluSx SINE Alu 1 312 0 189 0 0 0 chrX 43248655 43248676 -119351254 + (GA)n Simple_repeat Simple_repeat 2 22 0 815 172 96 20 chrX 43248677 43248875 -119351055 + L1MC4 LINE L1 7102 7314 -728 1442 171 91 0 chrX 43248875 43249139 -119350791 + AluJo SINE Alu 14 301 -11 * 1655 250 63 27 chrX 43249137 43249736 -119350194 + L1MC4 LINE L1 7303 7923 -119 406 208 61 99 chrX 43250007 43250219 -119349711 - L1MC4a LINE L1 -707 5463 5260 184 319 14 14 chrX 43250667 43250739 -119349191 - MIR SINE MIR -55 153 82 180 0 0 0 chrX 43251028 43251048 -119348882 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2112 105 44 7 chrX 43251065 43251361 -119348569 - AluSq SINE Alu -6 307 1 1958 104 71 4 chrX 43251361 43251641 -119348289 - AluSq SINE Alu -14 299 1 206 226 19 0 chrX 43252223 43252276 -119347654 + C-rich Low_complexity Low_complexity 2 55 0 23 0 0 0 chrX 43252285 43252308 -119347622 + GC_rich Low_complexity Low_complexity 1 23 0 205 365 11 11 chrX 43253312 43253490 -119346440 + (CATAC)n Simple_repeat Simple_repeat 3 180 0 212 186 17 0 chrX 43253491 43253550 -119346380 + (CATGC)n Simple_repeat Simple_repeat 2 61 0 572 263 128 25 chrX 43253972 43254082 -119345848 - L1MC4 LINE L1 0 8042 7945 585 64 0 0 chrX 43254082 43254160 -119345770 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 572 263 128 25 chrX 43254160 43254369 -119345561 - L1MC4 LINE L1 -97 7945 7690 435 217 0 0 chrX 43254527 43254633 -119345297 + CT-rich Low_complexity Low_complexity 1 106 0 262 283 120 0 chrX 43256907 43256999 -119342931 - MIR SINE MIR -140 122 20 1960 215 101 29 chrX 43258019 43258939 -119340991 - L2 LINE L2 -1 3312 2331 1063 236 109 36 chrX 43259690 43260130 -119339800 - L2 LINE L2 0 3313 2842 2144 108 24 3 chrX 43260882 43261169 -119338761 + AluSx SINE Alu 1 293 -19 1919 131 21 18 chrX 43261263 43261546 -119338384 - AluJo SINE Alu -14 298 15 41 0 0 19 chrX 43261552 43261580 -119338350 + AT_rich Low_complexity Low_complexity 1 29 -22 2335 94 0 0 chrX 43261580 43261867 -119338063 - AluSp SINE Alu -26 287 1 41 0 0 19 chrX 43261867 43261890 -119338040 + AT_rich Low_complexity Low_complexity 29 51 0 1151 170 16 0 chrX 43262157 43262339 -119337591 - AluJo SINE Alu -8 304 120 918 91 0 0 chrX 43262487 43262597 -119337333 - AluSq/x SINE Alu -196 116 7 294 280 216 30 chrX 43262651 43262887 -119337043 - L1MC4a LINE L1 -1844 5964 5685 526 238 189 34 chrX 43262944 43263060 -119336870 - L1MC4a LINE L1 -2246 5562 5465 2292 109 0 3 chrX 43263060 43263362 -119336568 + AluSx SINE Alu 1 301 -11 526 238 189 34 chrX 43263362 43263510 -119336420 - L1MC4a LINE L1 -2343 5465 5257 225 0 0 0 chrX 43263944 43263969 -119335961 + (CA)n Simple_repeat Simple_repeat 2 26 0 2447 103 0 0 chrX 43266007 43266319 -119333611 - AluSx SINE Alu 0 312 1 1312 191 77 4 chrX 43266319 43266591 -119333339 - AluJo SINE Alu -20 292 1 2523 67 0 0 chrX 43266619 43266917 -119333013 + AluY SINE Alu 1 298 -13 455 280 77 7 chrX 43266938 43267081 -119332849 - L1MEc LINE L1 -4096 2300 2148 37 23 0 0 chrX 43267513 43267557 -119332373 + AT_rich Low_complexity Low_complexity 1 44 0 1144 89 0 0 chrX 43267557 43267692 -119332238 + AluSq/x SINE Alu 1 135 -178 2350 90 0 0 chrX 43267692 43267982 -119331948 + AluSg SINE Alu 1 290 -20 1847 159 0 20 chrX 43268045 43268341 -119331589 - AluJo SINE Alu -22 290 1 252 292 292 0 chrX 43268501 43268614 -119331316 + MIR SINE MIR 117 262 0 379 291 87 67 chrX 43268618 43268720 -119331210 - L1MC4a LINE L1 -1865 5943 5844 1878 141 0 39 chrX 43268720 43269025 -119330905 - AluJo SINE Alu -19 293 1 379 291 87 67 chrX 43269025 43269151 -119330779 - L1MC4a LINE L1 -1964 5844 5707 2373 104 0 7 chrX 43269151 43269460 -119330470 + AluSq SINE Alu 1 307 -6 379 291 87 67 chrX 43269460 43269484 -119330446 - L1MC4a LINE L1 -2101 5707 5685 752 193 20 25 chrX 43269498 43269677 -119330253 - L1MC4a LINE L1 -687 5483 5304 1795 167 40 3 chrX 43269677 43269977 -119329953 - AluJo SINE Alu 0 312 2 752 193 20 25 chrX 43269977 43269994 -119329936 - L1MC4a LINE L1 -866 5304 5288 266 351 66 20 chrX 43270101 43270252 -119329678 - MIR SINE MIR -11 251 94 2063 148 0 0 chrX 43270962 43271252 -119328678 - AluJb SINE Alu -22 290 1 896 158 79 0 chrX 43272268 43272432 -119327498 - MLT1B LTR MaLR -12 378 202 1790 155 11 3 chrX 43272478 43272762 -119327168 - AluJb SINE Alu -6 306 21 2387 102 3 0 chrX 43272780 43273084 -119326846 - AluSp SINE Alu -7 306 2 822 181 0 0 chrX 43273088 43273221 -119326709 - FLAM_A SINE Alu 0 133 1 563 167 220 23 chrX 43273250 43273382 -119326548 + AluJb SINE Alu 83 240 -72 1971 134 39 11 chrX 43273428 43273712 -119326218 + AluSx SINE Alu 1 292 -20 962 139 13 6 chrX 43273717 43273875 -119326055 - MLT1B LTR MaLR -231 159 1 276 194 45 15 chrX 43273880 43273947 -119325983 - MLT1A1-int LTR MaLR -2 1733 1665 492 158 0 0 chrX 43273952 43274034 -119325896 - AluSg/x SINE Alu -13 296 215 716 157 0 0 chrX 43274034 43274142 -119325788 - AluSq/x SINE Alu -200 113 6 3164 205 46 89 chrX 43274160 43274397 -119325533 - MLT1A1-int LTR MaLR -81 1290 1044 1943 158 0 0 chrX 43274397 43274688 -119325242 + AluJb SINE Alu 3 293 -19 3164 205 46 89 chrX 43274688 43275550 -119324380 - MLT1A1-int LTR MaLR -327 1044 132 1749 144 111 15 chrX 43275550 43275883 -119324047 - MLT1A1 LTR MaLR 0 365 1 3164 205 46 89 chrX 43275883 43276010 -119323920 - MLT1A1-int LTR MaLR -1239 132 1 1935 175 48 13 chrX 43276010 43276387 -119323543 - MLT1B LTR MaLR 0 390 1 1624 182 30 69 chrX 43277170 43277576 -119322354 - MLT1B LTR MaLR 0 390 1 2257 101 0 10 chrX 43278440 43278737 -119321193 + AluSq SINE Alu 1 294 -19 327 301 65 13 chrX 43278826 43278979 -119320951 + L2 LINE L2 2798 2958 -356 387 248 45 45 chrX 43278992 43279064 -119320866 + MIR SINE MIR 86 160 -102 1529 153 78 98 chrX 43279064 43279437 -119320493 + MSTC LTR MaLR 1 365 -63 1536 172 23 8 chrX 43279437 43279699 -119320231 - AluJo SINE Alu -9 303 38 1529 153 78 98 chrX 43279699 43279762 -119320168 + MSTC LTR MaLR 365 428 0 387 248 45 45 chrX 43279762 43279822 -119320108 + MIR SINE MIR 159 218 -44 184 265 0 0 chrX 43279869 43279918 -119320012 + L2 LINE L2 2601 2649 -665 2490 63 0 16 chrX 43280385 43280700 -119319230 - AluY SINE Alu -1 310 1 1908 157 0 17 chrX 43280930 43281230 -119318700 - AluJo SINE Alu -17 295 1 350 278 103 24 chrX 43281335 43281461 -119318469 + LTR33 LTR ERVL 3 138 -383 335 158 12 37 chrX 43281888 43281970 -119317960 - L1ME3A LINE L1 -5 6165 6086 1904 125 10 7 chrX 43282024 43282313 -119317617 - AluJo SINE Alu -22 290 1 2050 134 3 7 chrX 43282338 43282637 -119317293 + AluJo SINE Alu 3 300 -12 639 279 70 12 chrX 43283751 43283995 -119315935 - L2 LINE L2 -246 3067 2810 238 342 13 0 chrX 43284025 43284101 -119315829 - L2 LINE L2 -685 2629 2553 191 308 26 0 chrX 43284175 43284253 -119315677 - L2 LINE L2 -273 2999 2920 255 263 13 0 chrX 43284550 43284626 -119315304 + L2 LINE L2 2790 2866 -448 1852 109 64 36 chrX 43284932 43285073 -119314857 + MER44D DNA MER2_type 1 137 -2354 2162 131 19 38 chrX 43285073 43285363 -119314567 + MER47A DNA MER2_type 1 295 -2028 1705 123 99 44 chrX 43285363 43285512 -119314418 - AluSx SINE Alu -3 309 170 2289 113 3 0 chrX 43285512 43285814 -119314116 - AluSq SINE Alu -10 303 1 1842 138 87 7 chrX 43285822 43286111 -119313819 - AluSx SINE Alu 0 312 1 1705 123 99 44 chrX 43286111 43286245 -119313685 - AluSx SINE Alu -148 164 1 2162 131 19 38 chrX 43286245 43286327 -119313603 + MER47A DNA MER2_type 295 366 0 1852 109 64 36 chrX 43286327 43286515 -119313415 + MER44D DNA MER2_type 137 609 0 553 226 19 138 chrX 43286518 43286593 -119313337 - L1MC/D LINE L1 -2143 5665 5583 2309 83 7 3 chrX 43286593 43286881 -119313049 - AluSc SINE Alu -20 289 1 553 226 19 138 chrX 43286881 43286949 -119312981 - L1MC/D LINE L1 -2225 5583 5564 2518 68 0 0 chrX 43286949 43287245 -119312685 + AluY SINE Alu 1 296 -15 553 226 19 138 chrX 43287245 43287361 -119312569 - L1MC/D LINE L1 -2244 5564 5436 2376 96 0 10 chrX 43287666 43287967 -119311963 - AluSx SINE Alu -14 298 1 259 267 41 82 chrX 43288504 43288650 -119311280 + MIR SINE MIR 113 252 -10 204 279 44 0 chrX 43288828 43288896 -119311034 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 728 237 77 55 chrX 43288979 43289055 -119310875 + L1MC4 LINE L1 7704 7777 -265 1406 164 95 78 chrX 43289055 43289275 -119310655 - MLT1A1 LTR MaLR 0 365 150 2442 86 0 10 chrX 43289275 43289576 -119310354 + AluSx SINE Alu 2 299 -13 2593 71 0 0 chrX 43289578 43289889 -119310041 + AluY SINE Alu 1 311 0 1406 164 95 78 chrX 43289889 43290024 -119309906 - MLT1A1 LTR MaLR -215 150 1 728 237 77 55 chrX 43290024 43290272 -119309658 + L1MC4 LINE L1 7777 8035 -7 821 225 72 36 chrX 43290365 43290614 -119309316 - MIR SINE MIR -1 261 4 224 170 19 19 chrX 43290653 43290706 -119309224 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 295 278 52 0 chrX 43290755 43290852 -119309078 + MIR SINE MIR 65 166 -96 2469 76 0 3 chrX 43291001 43291302 -119308628 + AluSx SINE Alu 1 300 -12 444 278 41 115 chrX 43291339 43291459 -119308471 - L1MC/D LINE L1 -1312 4834 4743 2132 142 0 0 chrX 43291459 43291762 -119308168 - AluJb SINE Alu -9 303 1 444 278 41 115 chrX 43291762 43291911 -119308019 - L1MC/D LINE L1 -1403 4743 4585 1846 143 50 0 chrX 43292402 43292682 -119307248 - AluJb SINE Alu -18 294 1 2158 114 4 0 chrX 43292867 43293147 -119306783 - AluSq SINE Alu -32 281 1 2271 133 0 0 chrX 43293324 43293633 -119306297 - AluSq SINE Alu -4 309 1 356 294 11 53 chrX 43293635 43293822 -119306108 - L1M4 LINE L1 -1226 4920 4742 1293 35 0 0 chrX 43293826 43293969 -119305961 - AluY SINE Alu -15 296 154 264 258 60 40 chrX 43293983 43294008 -119305922 - L1M4 LINE L1 -1430 4716 4693 2535 74 0 0 chrX 43294008 43294305 -119305625 - AluY SINE Alu -14 297 1 264 258 60 40 chrX 43294305 43294430 -119305500 - L1M4 LINE L1 -1453 4693 4563 805 196 15 49 chrX 43294446 43294650 -119305280 - MER46C DNA MER2_type -66 272 76 236 77 26 0 chrX 43294663 43294702 -119305228 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2235 79 4 0 chrX 43294705 43294971 -119304959 - AluSc SINE Alu -42 267 1 2168 92 27 20 chrX 43294971 43295266 -119304664 - AluSg SINE Alu -13 297 1 468 307 62 11 chrX 43295297 43295476 -119304454 - L1M4 LINE L1 -3728 2418 2231 1287 103 0 0 chrX 43295535 43295700 -119304230 - AluSg/x SINE Alu -14 296 132 2342 94 10 0 chrX 43295700 43295997 -119303933 - AluY SINE Alu -11 300 1 2244 125 0 0 chrX 43296140 43296436 -119303494 - AluSx SINE Alu -16 296 1 202 77 96 0 chrX 43296570 43296622 -119303308 + (TA)n Simple_repeat Simple_repeat 1 57 0 387 310 83 45 chrX 43296713 43296955 -119302975 - HAL1 LINE L1 -824 1683 1433 1858 132 14 24 chrX 43296957 43297245 -119302685 - AluJb SINE Alu -2 310 26 2423 92 0 0 chrX 43297245 43297539 -119302391 + AluSx SINE Alu 1 294 -18 259 138 0 102 chrX 43297540 43297599 -119302331 - AluJb SINE Alu -266 36 1 2294 106 0 32 chrX 43297614 43297925 -119302005 + AluSx SINE Alu 1 301 -11 383 305 28 7 chrX 43297995 43298136 -119301794 - HAL1 LINE L1 -1187 1320 1177 844 277 66 25 chrX 43298248 43298642 -119301288 - L2 LINE L2 -594 2720 2311 231 233 17 0 chrX 43298747 43298807 -119301123 - MLT1J LTR MaLR -45 466 406 402 77 0 0 chrX 43298817 43298869 -119301061 + AluSx SINE Alu 1 52 -248 4209 180 28 57 chrX 43298869 43299867 -119300063 - LTR5 LTR ERVK 0 969 1 1794 98 41 4 chrX 43299869 43300115 -119299815 + AluSx SINE Alu 50 304 -8 2044 118 17 10 chrX 43300293 43300589 -119299341 + AluJo SINE Alu 1 298 -14 2121 112 0 14 chrX 43300590 43300708 -119299222 + AluSx SINE Alu 19 137 -175 2370 101 3 0 chrX 43300708 43301006 -119298924 + AluSp SINE Alu 1 299 -14 2121 112 0 14 chrX 43301006 43301172 -119298758 + AluSx SINE Alu 137 299 -13 2276 113 0 3 chrX 43301174 43301476 -119298454 + AluSx SINE Alu 1 301 -11 334 313 31 16 chrX 43301534 43301662 -119298268 + MIR SINE MIR 28 157 -105 596 328 43 4 chrX 43301705 43301940 -119297990 + MIR SINE MIR 19 262 0 256 246 0 0 chrX 43301957 43302018 -119297912 + MIR SINE MIR 201 261 -1 397 204 41 0 chrX 43305050 43305148 -119294782 - U13 snRNA snRNA -2 102 1 591 122 0 0 chrX 43305507 43305589 -119294341 - 5S rRNA rRNA -39 82 1 2402 84 7 0 chrX 43306572 43306869 -119293061 - AluSx SINE Alu -13 299 1 1901 215 104 10 chrX 43307199 43307260 -119292670 - MLT1F LTR MaLR -8 534 480 2279 105 10 3 chrX 43307260 43307566 -119292364 + AluSx SINE Alu 1 308 -4 1901 215 104 10 chrX 43307566 43307992 -119291938 - MLT1F LTR MaLR -62 480 1 24 32 0 0 chrX 43308036 43308067 -119291863 + AT_rich Low_complexity Low_complexity 1 31 0 2091 99 3 20 chrX 43308081 43308375 -119291555 + AluSc SINE Alu 1 289 -20 1815 157 19 32 chrX 43308460 43308773 -119291157 + AluJb SINE Alu 1 309 -3 2499 50 0 50 chrX 43308915 43309234 -119290696 + AluY SINE Alu 1 303 -8 1347 65 0 60 chrX 43309234 43309419 -119290511 + AluY SINE Alu 133 306 -5 2147 124 14 0 chrX 43309491 43309781 -119290149 + AluSx SINE Alu 1 294 -18 2325 104 3 16 chrX 43309896 43310203 -119289727 + AluSx SINE Alu 1 303 -9 1043 91 0 8 chrX 43310205 43310337 -119289593 + AluSq/x SINE Alu 3 133 -179 2105 93 50 0 chrX 43310347 43310627 -119289303 + AluSx SINE Alu 5 298 -14 797 281 103 58 chrX 43310627 43311249 -119288681 + L1 LINE L1 3200 3860 -2286 2379 102 0 0 chrX 43311249 43311552 -119288378 + AluSg SINE Alu 1 303 -7 797 281 103 58 chrX 43311552 43311649 -119288281 + L1 LINE L1 3860 3951 -2195 900 175 0 0 chrX 43311659 43311796 -119288134 + FLAM_C SINE Alu 1 137 -6 311 260 107 92 chrX 43311796 43311878 -119288052 + L1 LINE L1 3956 4035 -2111 2360 101 0 3 chrX 43311878 43312175 -119287755 - AluSq SINE Alu -17 296 1 311 260 107 92 chrX 43312175 43312361 -119287569 + L1 LINE L1 4035 4217 -1929 2568 78 0 0 chrX 43312361 43312670 -119287260 + AluY SINE Alu 1 309 -2 311 260 107 92 chrX 43312670 43312709 -119287221 + L1 LINE L1 4217 4254 -1892 2335 91 0 7 chrX 43312709 43313007 -119286923 + AluSq SINE Alu 1 296 -17 311 260 107 92 chrX 43313007 43313109 -119286821 + L1 LINE L1 4254 4373 -1773 1654 211 112 19 chrX 43313234 43313719 -119286211 - MLT1F LTR MaLR -23 519 1 2348 96 3 0 chrX 43313744 43314035 -119285895 + AluSp SINE Alu 1 292 -21 1151 129 6 0 chrX 43314093 43314256 -119285674 - FRAM SINE Alu -12 164 1 1958 73 84 25 chrX 43314478 43314752 -119285178 + AluY SINE Alu 1 290 -21 1854 52 9 0 chrX 43314752 43314964 -119284966 + AluSc SINE Alu 80 294 -15 409 240 174 0 chrX 43314972 43315093 -119284837 + FLAM_A SINE Alu 1 142 0 616 303 89 7 chrX 43315108 43315300 -119284630 + L1 LINE L1 4821 4996 -1150 2390 109 0 0 chrX 43315300 43315613 -119284317 + AluSq SINE Alu 1 313 0 616 303 89 7 chrX 43315613 43315672 -119284258 + L1 LINE L1 4996 5049 -1097 2343 101 0 0 chrX 43315672 43315960 -119283970 + AluSg SINE Alu 1 288 -22 616 303 89 7 chrX 43315960 43316137 -119283793 + L1 LINE L1 5049 5308 -838 2328 89 0 30 chrX 43316428 43316732 -119283198 - AluSg SINE Alu -14 296 2 1982 71 0 78 chrX 43316830 43317113 -119282817 - AluSg SINE Alu -49 261 1 1643 95 9 0 chrX 43321223 43321433 -119278497 + AluSg/x SINE Alu 83 294 -16 1987 88 8 0 chrX 43321672 43321923 -119278007 + AluSx SINE Alu 42 294 -18 200 329 13 13 chrX 43322230 43322306 -119277624 + MIR SINE MIR 36 111 -151 291 279 54 9 chrX 43323656 43323734 -119276196 + MIR SINE MIR 104 190 -72 2261 107 10 0 chrX 43323734 43324033 -119275897 - AluSx SINE Alu -10 302 1 291 279 54 9 chrX 43324033 43324065 -119275865 + MIR SINE MIR 190 219 -43 399 203 220 0 chrX 43324295 43324413 -119275517 + MER46C DNA MER2_type 86 229 -109 679 216 91 143 chrX 43324549 43324662 -119275268 - LTR47B LTR ERVL -5 438 321 2069 115 14 3 chrX 43324662 43324949 -119274981 + AluSx SINE Alu 1 290 -22 679 216 91 143 chrX 43324949 43325177 -119274753 - LTR47B LTR ERVL -122 321 125 2210 52 0 4 chrX 43325177 43325444 -119274486 - AluY SINE Alu -45 266 1 679 216 91 143 chrX 43325444 43325563 -119274367 - LTR47B LTR ERVL -318 125 1 2241 111 3 0 chrX 43325646 43325943 -119273987 + AluSx SINE Alu 1 298 -14 1403 172 55 65 chrX 43326695 43327011 -119272919 + AluJb SINE Alu 1 313 0 1832 178 3 25 chrX 43327098 43327413 -119272517 - AluJb SINE Alu -4 308 1 4899 167 62 35 chrX 43327474 43327538 -119272392 - L1MA9 LINE L1 0 6312 6251 2373 90 0 3 chrX 43327538 43327837 -119272093 + AluSx SINE Alu 1 298 -14 4899 167 62 35 chrX 43327837 43328444 -119271486 - L1MA9 LINE L1 -61 6251 5662 2427 82 13 0 chrX 43328444 43328748 -119271182 - AluY SINE Alu -1 310 3 4899 167 62 35 chrX 43328748 43328854 -119271076 - L1MA9 LINE L1 -650 5662 5560 2145 154 0 0 chrX 43328854 43329166 -119270764 - AluSx SINE Alu 0 312 1 4899 167 62 35 chrX 43329166 43329522 -119270408 - L1MA9 LINE L1 -752 5560 5215 2077 100 46 4 chrX 43329522 43329802 -119270128 - AluSx SINE Alu -20 292 1 4899 167 62 35 chrX 43329802 43330064 -119269866 - L1MA9 LINE L1 -1097 5215 4872 2203 82 0 41 chrX 43330064 43330355 -119269575 + AluSg SINE Alu 1 279 -31 4899 167 62 35 chrX 43330355 43330415 -119269515 - L1MA9 LINE L1 -1440 4872 4815 290 119 0 0 chrX 43330450 43330492 -119269438 - MER57A LTR ERV1 -67 336 295 315 71 0 0 chrX 43330525 43330567 -119269363 + (TG)n Simple_repeat Simple_repeat 2 43 0 990 163 0 19 chrX 43330573 43330716 -119269214 - AluJo SINE Alu -35 277 136 2359 82 10 0 chrX 43330716 43331010 -119268920 - AluSp SINE Alu -16 297 1 990 163 0 19 chrX 43331010 43331026 -119268904 - AluJo SINE Alu -176 136 121 717 87 63 0 chrX 43331026 43331153 -119268777 - L1MA2 LINE L1 -172 6132 5998 * 1080 184 179 25 chrX 43331151 43331222 -119268708 - L1MA9 LINE L1 -2471 3675 3616 2141 118 17 7 chrX 43331222 43331519 -119268411 - AluSx SINE Alu -12 300 1 1080 184 179 25 chrX 43331519 43331687 -119268243 - L1MA9 LINE L1 -2530 3616 3475 2037 155 0 3 chrX 43331687 43331984 -119267946 - AluJb SINE Alu -15 297 2 1080 184 179 25 chrX 43331984 43332211 -119267719 - L1MA9 LINE L1 -2671 3475 3038 1786 138 0 4 chrX 43332213 43332474 -119267456 - AluJo SINE Alu 0 312 53 2258 85 31 3 chrX 43332474 43332767 -119267163 + AluSx SINE Alu 1 302 -10 399 131 0 16 chrX 43332771 43332832 -119267098 - AluJo SINE Alu -242 60 1 549 217 7 7 chrX 43332832 43332975 -119266955 - L1MA9 LINE L1 -3267 2879 2737 258 347 93 0 chrX 43333011 43333204 -119266726 - L2 LINE L2 -131 3182 2972 1627 237 125 6 chrX 43333214 43333686 -119266244 + REP3 LTR ERV 6 533 -29 1501 185 108 16 chrX 43333697 43334134 -119265796 - L2 LINE L2 -340 2974 2498 787 240 20 80 chrX 43334219 43334429 -119265501 + MIR SINE MIR 7 228 -34 2240 106 14 0 chrX 43334429 43334721 -119265209 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 43334724 43334747 -119265183 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 787 240 20 80 chrX 43334747 43334782 -119265148 + MIR SINE MIR 230 241 -21 201 333 0 0 chrX 43334889 43334973 -119264957 - L2 LINE L2 -421 2893 2810 1103 76 0 0 chrX 43335181 43335338 -119264592 + L1PA8 LINE L1 6016 6172 0 308 263 223 17 chrX 43335364 43335539 -119264391 + MIR SINE MIR 48 258 -4 349 284 20 0 chrX 43335539 43335641 -119264289 + L1M4 LINE L1 3787 3890 -2256 2175 114 7 0 chrX 43335929 43336219 -119263711 - AluSx SINE Alu -20 292 1 1408 171 13 0 chrX 43336815 43337049 -119262881 - AluJb SINE Alu 0 312 76 230 229 0 16 chrX 43337050 43337111 -119262819 + L1M4 LINE L1 108 167 -6375 1484 117 15 0 chrX 43337111 43337317 -119262613 + AluSx SINE Alu 12 220 -92 661 119 0 0 chrX 43337319 43337420 -119262510 - AluS SINE Alu -211 102 2 32 26 0 0 chrX 43337477 43337516 -119262414 + AT_rich Low_complexity Low_complexity 1 39 0 663 148 0 90 chrX 43337768 43337923 -119262007 + FLAM_C SINE Alu 2 142 -1 1726 177 37 0 chrX 43337929 43338200 -119261730 - AluJb SINE Alu -31 281 1 2339 98 0 7 chrX 43338219 43338525 -119261405 - AluSq SINE Alu -9 304 1 2018 131 42 0 chrX 43338527 43338810 -119261120 - AluJb SINE Alu -15 297 3 207 0 0 0 chrX 43338825 43338848 -119261082 + (A)n Simple_repeat Simple_repeat 1 23 0 526 200 26 61 chrX 43338873 43338965 -119260965 + MIR SINE MIR 100 184 -78 2144 132 3 0 chrX 43338965 43339260 -119260670 + AluSx SINE Alu 1 296 -16 526 200 26 61 chrX 43339260 43339337 -119260593 + MIR SINE MIR 184 262 0 2603 64 0 3 chrX 43339734 43340046 -119259884 + AluY SINE Alu 1 311 0 2423 93 0 0 chrX 43340255 43340557 -119259373 - AluSq SINE Alu -11 302 1 231 256 141 0 chrX 43342334 43342412 -119257518 - L2 LINE L2 -3 3310 3222 305 331 113 0 chrX 43342475 43342617 -119257313 - L2 LINE L2 -632 2682 2525 2156 57 49 0 chrX 43344144 43344408 -119255522 + AluY SINE Alu 1 277 -34 205 182 0 0 chrX 43345636 43345669 -119254261 + (TAG)n Simple_repeat Simple_repeat 2 34 0 614 234 28 7 chrX 43345674 43345819 -119254111 - MIR SINE MIR -12 250 103 183 205 0 0 chrX 43345842 43345881 -119254049 + CT-rich Low_complexity Low_complexity 2 40 0 520 297 67 0 chrX 43345937 43346102 -119253828 + MER5B DNA MER1_type 3 178 0 1787 168 17 17 chrX 43346350 43346647 -119253283 - AluJo SINE Alu -15 297 1 2380 105 0 0 chrX 43346695 43347001 -119252929 + AluSx SINE Alu 1 306 -6 1198 107 18 24 chrX 43347317 43347485 -119252445 + AluJb SINE Alu 133 299 -13 252 114 0 0 chrX 43347901 43347936 -119251994 - U2 snRNA snRNA -153 35 1 263 231 0 0 chrX 43348559 43348611 -119251319 - L2 LINE L2 0 3272 3221 1017 233 163 30 chrX 43348628 43348901 -119251029 - L2 LINE L2 0 3313 3078 2213 116 7 0 chrX 43348901 43349193 -119250737 - AluJo SINE Alu -18 294 1 1017 233 163 30 chrX 43349193 43349592 -119250338 - L2 LINE L2 -235 3078 2563 1504 214 16 23 chrX 43350370 43350679 -119249251 - MER68 LTR ERV1 0 562 256 1873 114 0 0 chrX 43350721 43350984 -119248946 - AluSx SINE Alu -35 277 15 1513 130 7 74 chrX 43351000 43351097 -119248833 - MER68 LTR ERV1 -297 265 163 2295 76 0 10 chrX 43351097 43351400 -119248530 - AluSc SINE Alu -9 300 1 1513 130 7 74 chrX 43351400 43351442 -119248488 - MER68 LTR ERV1 -399 163 120 1858 138 33 7 chrX 43351442 43351746 -119248184 - AluJb SINE Alu 0 312 1 1513 130 7 74 chrX 43351746 43351889 -119248041 - MER68 LTR ERV1 -442 120 1 2335 73 0 3 chrX 43352387 43352690 -119247240 + AluY SINE Alu 1 302 -9 2236 78 24 0 chrX 43352691 43352985 -119246945 + AluSc SINE Alu 1 301 -8 2177 89 3 3 chrX 43353294 43353585 -119246345 + AluSp SINE Alu 1 291 -22 2307 62 0 13 chrX 43353726 43354030 -119245900 - AluY SINE Alu -11 300 1 2149 89 0 0 chrX 43354085 43354393 -119245537 - AluSx SINE Alu 0 308 1 2397 71 0 3 chrX 43354641 43354951 -119244979 - AluSc SINE Alu 0 309 1 1125 102 0 6 chrX 43355822 43355979 -119243951 - AluSg/x SINE Alu -14 296 141 2187 97 7 0 chrX 43355985 43356284 -119243646 - AluSx SINE Alu -11 301 1 2014 113 0 3 chrX 43356394 43356694 -119243236 - AluSx SINE Alu -9 303 5 2412 69 0 0 chrX 43357448 43357752 -119242178 - AluSc SINE Alu -5 304 1 1959 121 7 7 chrX 43357823 43358104 -119241826 + AluSx SINE Alu 14 294 -18 441 156 0 44 chrX 43358748 43358838 -119241092 + AluJ/FRAM SINE Alu 226 311 -1 2046 136 7 0 chrX 43359104 43359412 -119240518 - AluSx SINE Alu -2 310 1 751 169 0 37 chrX 43359563 43359699 -119240231 - FLAM_A SINE Alu -2 131 1 514 246 135 8 chrX 43360012 43360342 -119239588 - LTR16A LTR ERVL 0 450 17 1956 112 25 3 chrX 43360343 43360628 -119239302 - AluSx SINE Alu -21 291 1 293 280 15 61 chrX 43360671 43360803 -119239127 + MIR3 SINE MIR 7 132 -76 465 229 92 0 chrX 43360833 43360942 -119238988 - L2 LINE L2 0 3313 3195 388 233 0 70 chrX 43361546 43361675 -119238255 + MER31-int LTR ERV1 1159 1278 -3658 302 176 29 69 chrX 43361784 43361886 -119238044 + MER31-int LTR ERV1 1290 1387 -3549 1876 162 0 0 chrX 43361891 43362199 -119237731 + AluJb SINE Alu 5 312 0 324 279 6 45 chrX 43362461 43362640 -119237290 + MER31-int LTR ERV1 1700 1871 -3065 1860 141 0 43 chrX 43362649 43362817 -119237113 - AluJb SINE Alu -10 292 118 1805 140 0 20 chrX 43362817 43362979 -119236951 - AluJb SINE Alu -18 294 139 2136 90 10 0 chrX 43362979 43363169 -119236761 - AluY SINE Alu 0 311 122 198 0 0 0 chrX 43363169 43363191 -119236739 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2136 90 10 0 chrX 43363191 43363315 -119236615 - AluY SINE Alu -189 122 1 1805 140 0 20 chrX 43363315 43363452 -119236478 - AluJb SINE Alu -173 139 1 1860 141 0 43 chrX 43363452 43363588 -119236342 - AluJb SINE Alu -184 118 1 663 179 49 12 chrX 43363790 43363952 -119235978 - Charlie1 DNA MER1_type -34 2727 2560 531 88 0 0 chrX 43363955 43364023 -119235907 + AluJ/FLAM SINE Alu 2 69 -243 1022 162 13 66 chrX 43364216 43364444 -119235486 + AluJo SINE Alu 89 304 -8 2256 70 0 10 chrX 43364648 43364946 -119234984 - AluSg SINE Alu -15 295 1 1777 129 7 4 chrX 43365072 43365351 -119234579 - AluSx SINE Alu -32 280 1 2332 76 0 10 chrX 43365353 43365655 -119234275 - AluSx SINE Alu -13 299 1 2154 89 0 0 chrX 43365682 43365987 -119233943 - AluY SINE Alu 0 305 1 2337 90 0 3 chrX 43366162 43366472 -119233458 - AluSx SINE Alu -3 309 1 2104 109 0 7 chrX 43366472 43366765 -119233165 - AluSx SINE Alu -21 291 1 744 134 126 0 chrX 43366951 43367070 -119232860 + AluSq/x SINE Alu 3 136 -176 2131 115 0 13 chrX 43367070 43367374 -119232556 + AluSx SINE Alu 1 300 -12 2054 99 25 0 chrX 43367377 43367688 -119232242 + AluSx SINE Alu 1 318 0 1562 153 50 21 chrX 43367798 43368080 -119231850 + AluJb SINE Alu 9 298 -14 215 355 0 16 chrX 43368255 43368317 -119231613 - MER5A DNA MER1_type -16 173 113 215 375 0 14 chrX 43368259 43368331 -119231599 + MER5B DNA MER1_type 21 91 -87 1810 164 3 6 chrX 43368436 43368748 -119231182 + AluJb SINE Alu 1 311 -1 2127 113 3 3 chrX 43368830 43369140 -119230790 + AluSx SINE Alu 1 310 -2 2086 114 3 7 chrX 43369141 43369448 -119230482 + AluSx SINE Alu 1 306 -6 1219 220 134 67 chrX 43369498 43369962 -119229968 - MLT1F LTR MaLR -47 495 1 881 201 0 44 chrX 43370101 43370305 -119229625 - AluJo SINE Alu -17 295 101 463 143 77 44 chrX 43370410 43370501 -119229429 + FRAM SINE Alu 29 122 -54 361 337 124 40 chrX 43370536 43370893 -119229037 + L1ME LINE L1 2433 2819 -3327 2114 127 0 6 chrX 43370916 43371230 -119228700 - AluJb SINE Alu 0 312 1 360 338 56 15 chrX 43371306 43371483 -119228447 + L1ME LINE L1 5478 5639 -482 2250 56 0 3 chrX 43371704 43372013 -119227917 - AluY SINE Alu 0 308 1 27 29 0 0 chrX 43372090 43372124 -119227806 + AT_rich Low_complexity Low_complexity 1 34 0 715 196 74 61 chrX 43372127 43372356 -119227574 + L1MC5 LINE L1 6809 7040 -921 977 198 42 58 chrX 43372363 43372449 -119227481 + L1MC5 LINE L1 7621 7707 -254 2409 72 0 0 chrX 43372449 43372754 -119227176 + AluSc SINE Alu 1 305 -4 977 198 42 58 chrX 43372754 43372980 -119226950 + L1MC5 LINE L1 7707 7928 -33 30 27 0 0 chrX 43373070 43373107 -119226823 + AT_rich Low_complexity Low_complexity 1 37 0 1426 133 29 91 chrX 43373107 43373274 -119226656 - AluJo SINE Alu -22 290 114 245 87 0 22 chrX 43373274 43373320 -119226610 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 1710 164 0 13 chrX 43373321 43373619 -119226311 - AluJb SINE Alu -18 294 1 1426 133 29 91 chrX 43373619 43373758 -119226172 - AluJo SINE Alu -197 115 1 2489 30 7 3 chrX 43373821 43374121 -119225809 + AluY SINE Alu 1 301 -10 1977 119 0 19 chrX 43374133 43374451 -119225479 + AluSx SINE Alu 1 312 0 531 212 248 0 chrX 43374557 43374694 -119225236 - MIR SINE MIR -44 218 48 279 0 0 0 chrX 43374997 43375028 -119224902 + (CTG)n Simple_repeat Simple_repeat 3 33 0 780 242 5 0 chrX 43375314 43375500 -119224430 + MER5A DNA MER1_type 1 187 -2 1964 125 7 3 chrX 43375798 43376095 -119223835 - AluSx SINE Alu -8 304 7 2046 78 14 4 chrX 43376439 43376749 -119223181 - AluSx SINE Alu 0 313 1 2139 99 3 0 chrX 43376754 43377048 -119222882 - AluSp SINE Alu -17 296 2 1681 105 0 0 chrX 43377049 43377418 -119222512 - L1M1 LINE L1 -743 5403 5108 1917 149 66 3 chrX 43377419 43377781 -119222149 + L1 LINE L1 3625 4009 -2137 1037 98 14 0 chrX 43377781 43377924 -119222006 - AluSq/x SINE Alu -167 145 1 307 143 0 0 chrX 43378192 43378234 -119221696 + 5S rRNA rRNA 1 42 -79 27 0 0 0 chrX 43378321 43378348 -119221582 + AT_rich Low_complexity Low_complexity 1 27 0 2179 110 0 0 chrX 43378352 43378653 -119221277 + AluSq SINE Alu 1 301 -12 1730 114 0 0 chrX 43378665 43378902 -119221028 + AluSx SINE Alu 1 237 -75 324 0 0 0 chrX 43379330 43379366 -119220564 + (TC)n Simple_repeat Simple_repeat 2 37 0 489 103 0 74 chrX 43379367 43379610 -119220320 + (TA)n Simple_repeat Simple_repeat 1 224 0 2172 121 48 70 chrX 43379610 43380002 -119219928 - Tigger3b DNA MER2_type -2458 570 171 930 172 6 0 chrX 43380002 43380159 -119219771 - FRAM SINE Alu -4 162 5 2172 121 48 70 chrX 43380159 43380259 -119219671 - Tigger3b DNA MER2_type -2857 171 113 2055 106 0 3 chrX 43380259 43380541 -119219389 - AluSx SINE Alu -18 294 14 2172 121 48 70 chrX 43380541 43380651 -119219279 - Tigger3b DNA MER2_type -2915 113 2 838 108 0 8 chrX 43380654 43380774 -119219156 + L1MB1 LINE L1 5909 6027 -141 231 208 21 0 chrX 43381013 43381061 -119218869 + CT-rich Low_complexity Low_complexity 3 51 0 2095 95 0 3 chrX 43381063 43381348 -119218582 - AluSx SINE Alu -28 284 1 879 207 0 0 chrX 43381349 43381518 -119218412 - FRAM SINE Alu -6 170 2 26 0 0 0 chrX 43381524 43381550 -119218380 + AT_rich Low_complexity Low_complexity 1 26 0 1814 151 0 0 chrX 43381690 43381975 -119217955 - AluJb SINE Alu -27 285 1 581 192 120 0 chrX 43381977 43382102 -119217828 - MIR SINE MIR -114 148 9 1064 104 7 0 chrX 43382188 43382332 -119217598 + AluSg/x SINE Alu 135 279 -33 6971 116 22 24 chrX 43382353 43382586 -119217344 + L1MC1 LINE L1 5193 5425 -908 2347 87 3 0 chrX 43382586 43382898 -119217032 + AluSp SINE Alu 1 313 0 6971 116 22 24 chrX 43382898 43383312 -119216618 + L1MC1 LINE L1 5425 5838 -495 2256 72 28 0 chrX 43383312 43383603 -119216327 + AluSx SINE Alu 1 299 -13 6971 116 22 24 chrX 43383603 43383632 -119216298 + L1MC1 LINE L1 5838 5866 -467 2216 138 45 22 chrX 43383632 43383988 -119215942 + THE1B LTR MaLR 1 364 0 6971 116 22 24 chrX 43383988 43384444 -119215486 + L1MC1 LINE L1 5866 6333 0 35 24 0 0 chrX 43385205 43385247 -119214683 + AT_rich Low_complexity Low_complexity 1 42 0 1625 170 0 3 chrX 43385275 43385563 -119214367 - AluJo SINE Alu -17 295 9 941 129 0 7 chrX 43385567 43385707 -119214223 - AluJo SINE Alu -173 139 1 1221 113 0 6 chrX 43386174 43386351 -119213579 - AluSq SINE Alu -136 177 2 1841 112 64 13 chrX 43386354 43386480 -119213450 - L1 LINE L1 -1821 4325 4207 1677 121 80 24 chrX 43386480 43386801 -119213129 - AluSx SINE Alu 0 312 1 2140 68 11 0 chrX 43386809 43387134 -119212796 - AluY SINE Alu 0 328 1 1841 112 64 13 chrX 43387134 43387311 -119212619 - L1 LINE L1 -1945 4201 3996 31 58 0 0 chrX 43387529 43387581 -119212349 + AT_rich Low_complexity Low_complexity 1 52 0 466 278 141 96 chrX 43388280 43389212 -119210718 + L1MEd LINE L1 664 1646 -4483 2353 69 0 0 chrX 43390358 43390649 -119209281 + AluY SINE Alu 3 293 -18 366 23 0 0 chrX 43390783 43390826 -119209104 + (TA)n Simple_repeat Simple_repeat 1 43 0 2190 104 7 0 chrX 43390868 43391166 -119208764 - AluSx SINE Alu -12 300 1 758 192 7 7 chrX 43391178 43391324 -119208606 - AluSp/q SINE Alu -11 302 157 262 250 68 57 chrX 43391438 43391526 -119208404 + MIR SINE MIR 137 225 -37 22 0 0 0 chrX 43391527 43391549 -119208381 + AT_rich Low_complexity Low_complexity 1 22 0 253 281 146 10 chrX 43391831 43391927 -119208003 + MIR SINE MIR 21 129 -79 2097 103 0 13 chrX 43391933 43392235 -119207695 - AluSx SINE Alu -14 298 1 2537 157 79 44 chrX 43392293 43392840 -119207090 + MER74B LTR ERVL 57 622 0 233 152 22 22 chrX 43392996 43393042 -119206888 + MIR3 SINE MIR 157 202 -6 2135 121 0 3 chrX 43393055 43393362 -119206568 + AluSx SINE Alu 1 306 -6 1472 134 18 0 chrX 43393382 43393605 -119206325 + MSTC LTR MaLR 202 428 0 2033 174 58 15 chrX 43393645 43394042 -119205888 - MLT-int LTR MaLR -7 1728 1315 6260 43 31 4 chrX 43394090 43394842 -119205088 + LTR17 LTR ERV1 1 772 -8 2311 92 0 0 chrX 43394991 43395294 -119204636 + AluY SINE Alu 1 303 -8 469 267 0 0 chrX 43395308 43395413 -119204517 - MLT-int LTR MaLR -952 783 679 2296 94 0 22 chrX 43395495 43395814 -119204116 - AluSx SINE Alu 0 312 1 3055 164 14 95 chrX 43395863 43396516 -119203414 - MSTD-int LTR MaLR -632 739 34 2149 104 0 38 chrX 43396516 43396834 -119203096 - AluSg SINE Alu -2 308 3 3055 164 14 95 chrX 43396834 43396874 -119203056 - MSTD-int LTR MaLR -1337 34 99 1555 171 103 58 chrX 43396874 43396944 -119202986 - MSTD LTR MaLR 0 396 331 2151 116 0 0 chrX 43396944 43397246 -119202684 + AluSx SINE Alu 1 302 -10 1555 171 103 58 chrX 43397246 43397554 -119202376 - MSTD LTR MaLR -65 331 1 3055 164 14 95 chrX 43397554 43397647 -119202283 - MSTD-int LTR MaLR -1271 100 1 1624 193 36 30 chrX 43397647 43397855 -119202075 - MLT1A1 LTR MaLR 0 365 160 193 40 0 0 chrX 43397855 43397880 -119202050 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2132 107 0 0 chrX 43397880 43398170 -119201760 - AluSx SINE Alu -23 289 1 1624 193 36 30 chrX 43398170 43398322 -119201608 - MLT1A1 LTR MaLR -204 161 1 2214 71 68 10 chrX 43398403 43398714 -119201216 - LTR5 LTR ERVK -639 330 2 5450 54 27 51 chrX 43398714 43400127 -119199803 - SVA Other Other -116 1267 53 1116 71 0 0 chrX 43400127 43400295 -119199635 + (GGGAGA)n Simple_repeat Simple_repeat 3 170 0 246 32 0 0 chrX 43400383 43400414 -119199516 + (TC)n Simple_repeat Simple_repeat 2 32 0 1865 156 0 3 chrX 43400414 43400697 -119199233 - AluJb SINE Alu -30 282 1 416 313 34 30 chrX 43400830 43401127 -119198803 - L1MEc LINE L1 -3785 2437 2174 24 53 0 0 chrX 43401299 43401337 -119198593 + AT_rich Low_complexity Low_complexity 1 38 0 1438 179 41 21 chrX 43401338 43401628 -119198302 + AluJo SINE Alu 1 296 -16 22 0 0 0 chrX 43401659 43401681 -119198249 + AT_rich Low_complexity Low_complexity 1 22 0 784 195 0 0 chrX 43401681 43401809 -119198121 + FLAM_A SINE Alu 1 128 -5 237 108 0 0 chrX 43401809 43401846 -119198084 + (TA)n Simple_repeat Simple_repeat 1 37 0 2419 61 0 0 chrX 43401896 43402191 -119197739 + AluY SINE Alu 1 295 -16 2263 101 0 3 chrX 43402248 43402554 -119197376 + AluY SINE Alu 1 305 -6 2261 199 88 61 chrX 43402597 43403174 -119196756 + MLT1E LTR MaLR 1 593 0 218 188 62 0 chrX 43403266 43403314 -119196616 + MIR SINE MIR 89 139 -123 192 77 0 0 chrX 43403331 43403357 -119196573 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 2039 125 7 0 chrX 43403357 43403645 -119196285 - AluSx SINE Alu -2 310 21 33 0 0 0 chrX 43404417 43404450 -119195480 + AT_rich Low_complexity Low_complexity 1 33 0 1671 138 65 0 chrX 43404474 43404750 -119195180 - AluJb SINE Alu -18 294 1 863 88 0 0 chrX 43404854 43404967 -119194963 - AluSp/q SINE Alu -10 303 191 2254 81 0 10 chrX 43405278 43405606 -119194324 + AluSx SINE Alu 1 312 0 2142 117 0 10 chrX 43405955 43406262 -119193668 - AluSx SINE Alu -8 304 1 1190 178 13 13 chrX 43406397 43406622 -119193308 + AluJo SINE Alu 84 308 -4 2018 117 9 28 chrX 43406795 43407112 -119192818 + AluSx SINE Alu 1 311 -1 1588 210 103 0 chrX 43407237 43407566 -119192364 - MLT1A1 LTR MaLR -2 363 1 202 231 0 0 chrX 43407791 43407830 -119192100 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1980 137 3 0 chrX 43407836 43408128 -119191802 - AluJb SINE Alu -19 293 1 325 284 7 68 chrX 43408236 43408384 -119191546 - L2 LINE L2 -163 3109 2971 289 233 100 138 chrX 43408392 43408521 -119191409 + MIR SINE MIR 30 147 -115 2297 90 0 3 chrX 43408521 43408832 -119191098 + AluSg SINE Alu 1 310 0 289 233 100 138 chrX 43408832 43408934 -119190996 + MIR SINE MIR 147 251 -11 231 200 0 0 chrX 43408900 43408940 -119190990 + L2 LINE L2 3263 3302 -11 * 827 132 16 0 chrX 43409334 43409455 -119190475 - AluJo SINE Alu -177 135 13 249 354 126 0 chrX 43409758 43409885 -119190045 + L2 LINE L2 3118 3260 -12 349 93 0 0 chrX 43409885 43409939 -119189991 + Alu SINE Alu 249 302 0 180 273 104 13 chrX 43410255 43410332 -119189598 + MIR SINE MIR 64 147 -115 2156 94 0 42 chrX 43410490 43410654 -119189276 - AluSg SINE Alu -15 295 148 2390 58 0 0 chrX 43410654 43410945 -119188985 - AluY SINE Alu -20 291 1 2156 94 0 42 chrX 43410945 43411088 -119188842 - AluSg SINE Alu -162 148 1 1645 173 0 27 chrX 43411092 43411393 -119188537 - AluJo SINE Alu -19 293 1 1594 166 10 36 chrX 43411397 43411423 -119188507 - AluJo SINE Alu -17 295 270 2167 116 0 3 chrX 43411423 43411724 -119188206 + AluSc SINE Alu 1 300 -9 1594 166 10 36 chrX 43411724 43411999 -119187931 - AluJo SINE Alu -42 270 2 2140 114 0 3 chrX 43412228 43412525 -119187405 + AluSq SINE Alu 1 296 -17 2290 93 3 0 chrX 43412526 43412826 -119187104 + AluSx SINE Alu 1 301 -11 1299 155 54 32 chrX 43413001 43413278 -119186652 - MLT1B LTR MaLR -107 283 1 1603 95 63 0 chrX 43413531 43413753 -119186177 - AluSx SINE Alu -76 236 1 2106 97 0 0 chrX 43413753 43414032 -119185898 - AluSq SINE Alu -34 279 1 2163 103 0 0 chrX 43414975 43415275 -119184655 - AluSx SINE Alu -12 300 1 518 314 92 21 chrX 43416972 43417211 -119182719 - MIR SINE MIR -1 261 6 287 281 85 0 chrX 43417463 43417545 -119182385 - L2 LINE L2 -14 3299 3211 393 131 24 24 chrX 43417664 43417748 -119182182 + MER20B DNA MER1_type 694 777 -6 26 0 0 0 chrX 43418385 43418411 -119181519 + AT_rich Low_complexity Low_complexity 1 26 0 1735 150 33 17 chrX 43418588 43418888 -119181042 - AluJo SINE Alu -7 305 1 216 0 0 0 chrX 43418900 43418924 -119181006 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1832 163 0 0 chrX 43419078 43419378 -119180552 + AluJb SINE Alu 12 311 -1 1000 99 13 0 chrX 43419384 43419536 -119180394 + MER41B LTR ERV1 482 635 0 628 81 23 0 chrX 43419536 43419622 -119180308 + MER41B-int LTR ERV1 1 88 -5858 553 125 0 0 chrX 43419617 43419697 -119180233 + MER41B-int LTR ERV1 5408 5487 -459 * 1120 114 114 0 chrX 43419692 43419885 -119180045 + MER41B-int LTR ERV1 5729 5943 -3 3644 98 18 18 chrX 43419887 43420436 -119179494 + MER41B LTR ERV1 1 549 -86 183 42 0 0 chrX 43420438 43420462 -119179468 + (CAA)n Simple_repeat Simple_repeat 2 25 0 665 230 43 72 chrX 43420631 43420735 -119179195 + MIR SINE MIR 60 157 -105 2319 80 0 3 chrX 43420735 43421034 -119178896 - AluSg SINE Alu -12 298 1 665 230 43 72 chrX 43421034 43421138 -119178792 + MIR SINE MIR 157 262 0 429 351 72 9 chrX 43421624 43421911 -119178019 + L1ME3A LINE L1 5560 5866 -304 2376 79 0 7 chrX 43422178 43422481 -119177449 + AluSc SINE Alu 1 301 -8 1903 148 0 16 chrX 43422634 43422951 -119176979 - AluSx SINE Alu 0 312 1 197 196 20 0 chrX 43423592 43423643 -119176287 + CT-rich Low_complexity Low_complexity 3 54 0 265 284 6 11 chrX 43425727 43425903 -119174027 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 282 236 14 7 chrX 43425948 43426088 -119173842 + (TGAA)n Simple_repeat Simple_repeat 1 141 0 241 212 30 0 chrX 43426109 43426175 -119173755 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 192 261 0 0 chrX 43426602 43426667 -119173263 + (TGGG)n Simple_repeat Simple_repeat 3 67 0 882 158 63 6 chrX 43426667 43426825 -119173105 + MER96 DNA MER1_type? 1 167 -8 200 342 13 13 chrX 43426830 43426906 -119173024 + (TGGG)n Simple_repeat Simple_repeat 1 76 0 422 267 6 0 chrX 43426915 43427087 -119172843 + (TGGA)n Simple_repeat Simple_repeat 1 173 0 238 279 14 14 chrX 43427113 43427263 -119172667 + (TGGA)n Simple_repeat Simple_repeat 1 150 0 322 335 39 7 chrX 43427276 43427431 -119172499 + (TGGA)n Simple_repeat Simple_repeat 2 161 0 193 139 0 47 chrX 43428146 43428189 -119171741 - MIR SINE MIR -118 144 104 204 125 0 0 chrX 43428473 43428505 -119171425 + (CCA)n Simple_repeat Simple_repeat 2 33 0 1875 138 13 20 chrX 43429279 43429577 -119170353 + AluJb SINE Alu 1 296 -16 1676 125 0 77 chrX 43429702 43430015 -119169915 - AluJb SINE Alu -23 289 1 1255 102 11 0 chrX 43430144 43430320 -119169610 - AluSg/x SINE Alu -14 298 121 265 256 0 26 chrX 43431052 43431130 -119168800 + (TTCA)n Simple_repeat Simple_repeat 1 76 0 814 272 76 48 chrX 43431178 43431535 -119168395 - L2 LINE L2 -40 3273 2907 27 0 0 0 chrX 43431551 43431578 -119168352 + AT_rich Low_complexity Low_complexity 1 27 0 2245 84 0 7 chrX 43431583 43431879 -119168051 + AluSx SINE Alu 1 294 -18 224 281 49 0 chrX 43432096 43432168 -119167762 + MIR SINE MIR 87 169 -39 2160 100 3 0 chrX 43432682 43432972 -119166958 + AluY SINE Alu 1 291 -20 1919 175 11 3 chrX 43432972 43433321 -119166609 + L1PB4 LINE L1 5777 6128 -28 442 274 45 34 chrX 43433322 43433501 -119166429 + AluSp SINE Alu 2 182 -131 503 173 2 32 chrX 43433501 43433587 -119166343 + L1PB4 LINE L1 6043 6130 -173 2107 108 0 10 chrX 43433587 43433882 -119166048 + AluSx SINE Alu 1 292 -20 503 173 2 32 chrX 43433882 43433914 -119166016 + L1PB4 LINE L1 6130 6278 -25 329 291 47 16 chrX 43433926 43434053 -119165877 + L1ME3A LINE L1 6027 6157 -13 456 248 8 17 chrX 43434295 43434412 -119165518 - MIR SINE MIR -146 116 1 215 194 0 0 chrX 43436106 43436142 -119163788 + (CCG)n Simple_repeat Simple_repeat 2 37 0 244 164 229 0 chrX 43437197 43437258 -119162672 - Charlie2a DNA MER1_type -21 2841 2767 886 193 96 20 chrX 43437266 43437515 -119162415 - Charlie2a DNA MER1_type -1855 1007 740 652 216 118 118 chrX 43437547 43437671 -119162259 - Charlie2a DNA MER1_type -2441 421 298 1297 216 33 39 chrX 43437671 43438005 -119161925 + MER46C DNA MER2_type 5 336 -2 652 216 118 118 chrX 43438005 43438245 -119161685 - Charlie2a DNA MER1_type -2563 299 57 206 243 68 0 chrX 43438714 43438788 -119161142 - MIR SINE MIR -65 197 119 234 266 191 0 chrX 43438900 43438994 -119160936 - MIR SINE MIR -3 259 148 649 249 102 20 chrX 43439008 43439205 -119160725 + MIR SINE MIR 7 219 -43 678 211 101 26 chrX 43439228 43439455 -119160475 - L2 LINE L2 -727 2587 2344 237 304 10 29 chrX 43439421 43439523 -119160407 - MIR SINE MIR -149 113 14 * 341 320 47 52 chrX 43440525 43440697 -119159233 + MER91A DNA MER1_type 1 171 -25 1115 281 89 5 chrX 43440843 43441213 -119158717 - MLT1J2 LTR MaLR 0 450 50 521 277 45 7 chrX 43441309 43441464 -119158466 - MER20B DNA MER1_type -594 189 29 799 224 104 58 chrX 43442483 43442724 -119157206 + MIR SINE MIR 1 252 -10 666 268 77 10 chrX 43442747 43442956 -119156974 + MER46C DNA MER2_type 31 253 -85 440 172 33 73 chrX 43443124 43443275 -119156655 + MER104 DNA Tc2 4 148 -32 463 257 0 66 chrX 43443333 43443485 -119156445 - MIR SINE MIR -51 211 70 247 272 105 26 chrX 43443552 43443666 -119156264 - MIR SINE MIR -67 141 19 180 298 83 24 chrX 43444309 43444393 -119155537 + L2 LINE L2 3121 3209 -63 396 158 0 0 chrX 43446912 43446988 -119152942 + CT-rich Low_complexity Low_complexity 4 79 0 247 261 146 80 chrX 43448358 43448584 -119151346 + L2 LINE L2 3031 3271 -1 1826 142 0 46 chrX 43448792 43449095 -119150835 + AluJb SINE Alu 1 289 -23 233 343 0 0 chrX 43449100 43449240 -119150690 + (ACTTG)n Simple_repeat Simple_repeat 4 143 0 * 347 316 12 6 chrX 43449217 43449385 -119150545 + (GACTG)n Simple_repeat Simple_repeat 2 170 0 319 244 30 52 chrX 43449772 43449907 -119150023 + MER113 DNA MER1_type? 160 291 -230 224 79 26 26 chrX 43449952 43449990 -119149940 - L2 LINE L2 -9 3304 3267 252 0 0 0 chrX 43453140 43453168 -119146762 + (CA)n Simple_repeat Simple_repeat 1 28 0 234 152 0 0 chrX 43454870 43454916 -119145014 - MLT1D LTR MaLR -260 245 200 857 212 15 10 chrX 43454959 43455157 -119144773 - MLT1D LTR MaLR -293 212 14 2343 110 0 0 chrX 43456119 43456420 -119143510 + AluSx SINE Alu 1 301 -11 883 244 67 32 chrX 43456862 43456940 -119142990 - MLT1D LTR MaLR -2 503 429 2161 126 10 0 chrX 43456940 43457242 -119142688 + AluSx SINE Alu 1 305 -7 883 244 67 32 chrX 43457242 43457345 -119142585 - MLT1D LTR MaLR -76 429 331 2476 94 0 0 chrX 43457345 43457654 -119142276 - AluSc SINE Alu 0 309 1 883 244 67 32 chrX 43457654 43457783 -119142147 - MLT1D LTR MaLR -174 331 181 961 167 0 123 chrX 43457867 43458119 -119141811 - MLT1D LTR MaLR -270 235 15 411 21 0 0 chrX 43458443 43458491 -119141439 + (CA)n Simple_repeat Simple_repeat 2 49 0 1123 159 34 29 chrX 43459213 43459421 -119140509 - MER2 DNA MER2_type -135 210 2 2127 172 18 36 chrX 43461040 43461487 -119138443 - MLT1D LTR MaLR -22 483 45 211 148 57 23 chrX 43462147 43462235 -119137695 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 302 188 73 18 chrX 43462261 43462426 -119137504 + (TA)n Simple_repeat Simple_repeat 2 175 0 2323 84 0 3 chrX 43462662 43462974 -119136956 + AluSx SINE Alu 1 311 0 1082 215 22 54 chrX 43463053 43463369 -119136561 - MLT1D LTR MaLR -1 504 199 398 123 0 0 chrX 43463612 43463677 -119136253 - MLT1D LTR MaLR -360 145 81 2294 94 0 14 chrX 43463685 43463982 -119135948 - AluSx SINE Alu -19 293 1 31 44 0 0 chrX 43463993 43464038 -119135892 + AT_rich Low_complexity Low_complexity 1 45 0 722 110 0 0 chrX 43464039 43464139 -119135791 - U6 snRNA snRNA -7 100 1 2073 125 10 3 chrX 43464165 43464476 -119135454 - L1PB4 LINE L1 -7 6149 5837 339 185 46 0 chrX 43464477 43464542 -119135388 - MLT1D LTR MaLR -416 89 22 2041 125 10 7 chrX 43464844 43465139 -119134791 - AluJb SINE Alu -16 296 1 2350 101 0 0 chrX 43465893 43466190 -119133740 + AluSx SINE Alu 1 297 -15 1988 122 0 24 chrX 43466621 43466933 -119132997 + AluSx SINE Alu 1 305 0 1789 126 4 4 chrX 43467791 43468060 -119131870 + MER66B LTR ERV1 215 483 -3 251 180 0 0 chrX 43469909 43469959 -119129971 - MLT1F1 LTR MaLR -2 565 516 337 195 81 11 chrX 43469961 43470048 -119129882 - MLT1F1 LTR MaLR -313 254 162 430 134 50 42 chrX 43470048 43470167 -119129763 - L1M4 LINE L1 -3141 3005 2886 1503 55 45 0 chrX 43470989 43471191 -119128739 - MER30 DNA MER1_type 0 230 20 1794 107 133 7 chrX 43471291 43471561 -119128369 - AluSg1 SINE Alu -5 304 1 1013 144 8 132 chrX 43471828 43471960 -119127970 + MER20 DNA MER1_type 1 148 -71 2120 225 76 45 chrX 43471960 43472363 -119127567 - MER90 LTR ERV1 0 575 186 2457 53 0 0 chrX 43472363 43472686 -119127244 - AluY SINE Alu 0 323 1 1961 151 3 7 chrX 43472688 43472986 -119126944 - AluJb SINE Alu -15 297 1 2120 225 76 45 chrX 43472986 43473133 -119126797 - MER90 LTR ERV1 -389 186 4 1013 144 8 132 chrX 43473133 43473162 -119126768 + MER20 DNA MER1_type 148 179 -40 2837 139 17 9 chrX 43473162 43473623 -119126307 + MLT1C LTR MaLR 3 467 0 1013 144 8 132 chrX 43473623 43473710 -119126220 + MER20 DNA MER1_type 179 219 0 417 185 104 22 chrX 43474078 43474213 -119125717 + L1MC4a LINE L1 7663 7808 0 2099 145 3 0 chrX 43474221 43474525 -119125405 + AluJb SINE Alu 1 305 -7 1658 153 44 22 chrX 43474578 43474874 -119125056 + AluJb SINE Alu 1 302 0 1726 151 6 66 chrX 43474983 43475114 -119124816 + AluJb SINE Alu 1 138 -174 1422 152 124 12 chrX 43475114 43475371 -119124559 - AluSg1 SINE Alu -23 286 1 1726 151 6 66 chrX 43475371 43475556 -119124374 + AluJb SINE Alu 138 298 -14 1405 164 0 5 chrX 43475557 43475776 -119124154 + AluJb SINE Alu 88 305 -7 282 148 0 0 chrX 43475877 43475931 -119123999 + (A)n Simple_repeat Simple_repeat 1 54 0 331 250 70 62 chrX 43477630 43477758 -119122172 + L2 LINE L2 3183 3311 -2 262 231 0 31 chrX 43477760 43477825 -119122105 + L1ME LINE L1 5615 5677 -444 1876 129 14 4 chrX 43478336 43478616 -119121314 - AluJb SINE Alu -25 287 5 1088 220 40 47 chrX 43478834 43478940 -119120990 + L1M4 LINE L1 2770 2875 -3271 2319 97 3 3 chrX 43478940 43479239 -119120691 - AluSq SINE Alu -14 299 1 1088 220 40 47 chrX 43479239 43479496 -119120434 + L1M4 LINE L1 2875 3132 -3014 1823 140 55 10 chrX 43479496 43479788 -119120142 + AluSq SINE Alu 1 305 -8 1198 173 12 119 chrX 43479792 43480128 -119119802 + AluJo SINE Alu 2 301 -1 1088 220 40 47 chrX 43480128 43480180 -119119750 + L1M4 LINE L1 3135 3188 -2958 2091 109 4 0 chrX 43480184 43480459 -119119471 + AluSx SINE Alu 1 276 -36 1903 150 14 3 chrX 43480681 43480975 -119118955 - AluJb SINE Alu -15 297 1 1607 121 25 8 chrX 43481830 43482070 -119117860 + AluSx SINE Alu 1 244 -68 752 176 15 15 chrX 43482221 43482357 -119117573 - AluJb SINE Alu -6 306 171 1461 119 29 0 chrX 43482541 43482751 -119117179 - AluSq SINE Alu -2 311 96 2237 108 16 0 chrX 43482751 43483057 -119116873 + AluSx SINE Alu 1 311 -1 942 129 0 0 chrX 43483067 43483191 -119116739 + FLAM_C SINE Alu 1 124 -19 27 29 0 0 chrX 43483191 43483225 -119116705 + AT_rich Low_complexity Low_complexity 1 34 0 573 181 11 0 chrX 43483371 43483465 -119116465 + FRAM SINE Alu 60 154 -22 23 0 0 0 chrX 43483477 43483500 -119116430 + AT_rich Low_complexity Low_complexity 1 23 0 2313 95 0 10 chrX 43483505 43483800 -119116130 - AluSg SINE Alu -18 292 1 222 303 13 13 chrX 43484028 43484104 -119115826 + MIR SINE MIR 77 152 -110 28 29 0 0 chrX 43484210 43484245 -119115685 + AT_rich Low_complexity Low_complexity 1 35 0 954 138 86 13 chrX 43484245 43484397 -119115533 - AluSx SINE Alu -149 163 1 2259 160 21 18 chrX 43484438 43484826 -119115104 - MLT1B LTR MaLR -1 389 1 319 261 201 27 chrX 43485019 43485031 -119114899 - HAL1b LINE L1 -28 1320 1311 1980 121 13 26 chrX 43485031 43485200 -119114730 - AluSx SINE Alu -9 303 138 2280 101 0 13 chrX 43485200 43485506 -119114424 - AluSx SINE Alu -10 302 1 1980 121 13 26 chrX 43485506 43485643 -119114287 - AluSx SINE Alu -174 138 1 319 261 201 27 chrX 43485643 43485814 -119114116 - HAL1b LINE L1 -37 1311 1105 1653 167 63 97 chrX 43485969 43486040 -119113890 - MLT1D LTR MaLR -13 492 420 2026 138 0 3 chrX 43486040 43486336 -119113594 - AluJb SINE Alu -13 299 5 1653 167 63 97 chrX 43486336 43486678 -119113252 - MLT1D LTR MaLR -85 420 94 2474 101 0 0 chrX 43486678 43486986 -119112944 - AluSx SINE Alu -4 308 1 1653 167 63 97 chrX 43486986 43487033 -119112897 - MLT1D LTR MaLR -411 94 47 241 296 14 0 chrX 43487506 43487577 -119112353 - MIR3 SINE MIR -21 187 116 2224 116 0 0 chrX 43487721 43488013 -119111917 + AluSq SINE Alu 1 292 -21 812 201 0 19 chrX 43488026 43488180 -119111750 + FRAM SINE Alu 1 151 -15 419 269 31 25 chrX 43488258 43488418 -119111512 - MIR3 SINE MIR -30 178 18 2262 98 0 26 chrX 43488529 43488836 -119111094 - AluSx SINE Alu -13 299 1 215 188 50 100 chrX 43488899 43488979 -119110951 - MIR SINE MIR -76 186 111 5213 138 13 24 chrX 43489072 43489490 -119110440 + L1MB3 LINE L1 5193 5614 -569 2201 139 0 0 chrX 43489490 43489793 -119110137 + AluJb SINE Alu 1 303 -9 5213 138 13 24 chrX 43489793 43490149 -119109781 + L1MB3 LINE L1 5614 5972 -211 1832 147 0 58 chrX 43490149 43490295 -119109635 + AluJo SINE Alu 1 154 -158 2378 73 0 13 chrX 43490295 43490595 -119109335 + AluY SINE Alu 1 296 -15 2438 92 0 0 chrX 43490598 43490901 -119109029 + AluSg SINE Alu 1 303 -7 1832 147 0 58 chrX 43490901 43491063 -119108867 + AluJo SINE Alu 156 295 -17 5213 138 13 24 chrX 43491063 43491282 -119108648 + L1MB3 LINE L1 5972 6176 -7 440 247 40 52 chrX 43491952 43492126 -119107804 - MLT1J2 LTR MaLR -23 427 256 259 278 62 0 chrX 43492185 43492282 -119107648 - MLT1J LTR MaLR -323 188 86 251 325 44 16 chrX 43492341 43492502 -119107428 - MIR SINE MIR -62 146 10 586 212 0 9 chrX 43495114 43495227 -119104703 + L2 LINE L2 3201 3312 -1 2218 113 19 7 chrX 43495250 43495559 -119104371 - AluSq SINE Alu 0 313 1 6296 119 72 112 chrX 43495753 43496004 -119103926 + ERVL LTR ERVL 2313 2572 -3082 183 284 45 15 chrX 43496004 43496071 -119103859 - L3 LINE CR1 -1054 523 455 6296 119 72 112 chrX 43496071 43496381 -119103549 + ERVL LTR ERVL 2572 2893 -2761 2511 85 3 0 chrX 43496381 43496686 -119103244 - AluSg SINE Alu -4 306 1 6296 119 72 112 chrX 43496686 43497039 -119102891 + ERVL LTR ERVL 2893 3259 -2395 1719 152 4 15 chrX 43497039 43497308 -119102622 - AluJb SINE Alu -9 303 38 6296 119 72 112 chrX 43497308 43497396 -119102534 + ERVL LTR ERVL 3259 3349 -2305 1921 145 0 35 chrX 43497396 43497707 -119102223 + AluJb SINE Alu 1 300 -12 6296 119 72 112 chrX 43497707 43498156 -119101774 + ERVL LTR ERVL 3349 3745 -1909 1882 172 148 32 chrX 43498177 43498461 -119101469 + MLT2B1 LTR ERVL 1 251 -269 2233 116 0 0 chrX 43498461 43498770 -119101160 - AluSx SINE Alu 0 309 1 1882 172 148 32 chrX 43498770 43498950 -119100980 + MLT2B1 LTR ERVL 251 520 0 2183 128 7 3 chrX 43499387 43499692 -119100238 - AluSx SINE Alu -6 306 1 1693 148 97 0 chrX 43499782 43500060 -119099870 + AluJo SINE Alu 1 305 -7 2293 116 0 0 chrX 43500340 43500634 -119099296 - AluSx SINE Alu -18 294 1 2201 112 0 3 chrX 43500858 43501152 -119098778 - AluSx SINE Alu -19 293 1 240 257 0 29 chrX 43501925 43501995 -119097935 + MIR SINE MIR 171 238 -24 2327 107 7 0 chrX 43502014 43502314 -119097616 - AluSq SINE Alu -11 302 1 180 279 186 31 chrX 43502371 43502500 -119097430 + L2 LINE L2 2794 2942 -372 799 239 87 41 chrX 43502605 43502974 -119096956 + L1M4 LINE L1 2959 3344 -2802 1895 161 0 41 chrX 43502974 43503291 -119096639 + AluJo SINE Alu 1 304 -8 291 192 0 0 chrX 43503535 43503613 -119096317 + (AATAG)n Simple_repeat Simple_repeat 4 81 0 455 198 104 9 chrX 43503664 43503770 -119096160 - L2 LINE L2 -18 3295 3180 202 301 37 52 chrX 43503778 43503914 -119096016 - L2 LINE L2 -328 2944 2811 409 276 64 19 chrX 43503954 43504110 -119095820 - MIR SINE MIR -14 248 86 1208 198 34 4 chrX 43504126 43504363 -119095567 - AluJo SINE Alu -10 302 59 1570 115 86 19 chrX 43604364 43604633 -118995297 + MER21A LTR ERV1 639 925 -6 1240 160 11 80 chrX 43605546 43605808 -118994122 - AluJb SINE Alu -19 293 50 2486 138 5 42 chrX 43605834 43606239 -118993691 + MLT1B LTR MaLR 1 390 0 307 222 42 14 chrX 43606627 43606699 -118993231 + MER81 DNA DNA 26 99 -15 424 238 48 24 chrX 43606721 43606847 -118993083 + L1ME3A LINE L1 6027 6155 -15 803 138 32 16 chrX 43606879 43607002 -118992928 - AluJb SINE Alu -186 126 2 240 342 165 34 chrX 43607265 43607502 -118992428 + L2 LINE L2 3003 3270 -2 483 105 22 21 chrX 43607591 43607680 -118992250 + MLT1B LTR MaLR 312 614 -1 1874 124 51 0 chrX 43608306 43608581 -118991349 + AluJb SINE Alu 9 297 -15 351 296 148 34 chrX 43608636 43609048 -118990882 - LTR67 LTR ERVL 0 557 99 644 268 52 11 chrX 43609162 43609500 -118990430 - MLT1K LTR MaLR 0 588 190 507 241 153 39 chrX 43610211 43610449 -118989481 - L1MC/D LINE L1 -2226 5582 5306 2793 146 11 16 chrX 43610449 43610894 -118989036 + LTR47B LTR ERVL 1 443 0 507 241 153 39 chrX 43610894 43610937 -118988993 - L1MC/D LINE L1 -2502 5306 5269 2152 217 69 50 chrX 43611537 43612215 -118987715 + LTR8 LTR ERV1 1 691 0 3124 203 48 73 chrX 43612288 43613121 -118986809 + MER21B LTR ERV1 1 812 -51 688 294 71 4 chrX 43613645 43613883 -118986047 - MER102b DNA MER1_type 0 341 88 569 141 10 20 chrX 43613889 43613988 -118985942 - AluJo SINE Alu -176 136 39 258 212 0 76 chrX 43613988 43614054 -118985876 - MER102b DNA MER1_type -254 87 27 484 62 15 0 chrX 43614148 43614213 -118985717 - MLT1E3 LTR MaLR 0 624 559 1089 33 0 0 chrX 43614245 43614367 -118985563 + L1PA4 LINE L1 6026 6147 -8 412 134 30 0 chrX 43614374 43614440 -118985490 - MLT1E3 LTR MaLR -49 544 477 1846 183 14 17 chrX 43614440 43614807 -118985123 - MLT1A1 LTR MaLR 0 365 5 1884 233 58 41 chrX 43614811 43615344 -118984586 - MLT1E1 LTR MaLR -112 542 1 1437 105 0 0 chrX 43615424 43615605 -118984325 - AluSq SINE Alu -132 181 1 503 229 8 0 chrX 43615609 43615727 -118984203 - L1M4 LINE L1 -5104 1751 1633 579 257 28 17 chrX 43615911 43615944 -118983986 + L1M4b LINE L1 1244 1275 -5584 3154 85 27 38 chrX 43615944 43616393 -118983537 - MLT2A1 LTR ERVL 0 444 1 579 257 28 17 chrX 43616393 43616538 -118983392 + L1M4b LINE L1 1275 1424 -5435 34 89 0 0 chrX 43616651 43616741 -118983189 + AT_rich Low_complexity Low_complexity 1 90 0 21 89 0 0 chrX 43616790 43616846 -118983084 + AT_rich Low_complexity Low_complexity 1 56 0 193 75 50 0 chrX 43616874 43616914 -118983016 + (TA)n Simple_repeat Simple_repeat 1 42 0 1936 36 0 0 chrX 43616941 43617160 -118982770 - L1PA5 LINE L1 -4 6150 5932 24 0 0 0 chrX 43617160 43617184 -118982746 + AT_rich Low_complexity Low_complexity 1 24 0 1578 224 60 69 chrX 43617184 43617394 -118982536 - L1M4 LINE L1 -5238 1621 1411 2345 95 0 0 chrX 43617394 43617698 -118982232 - AluSq SINE Alu -9 304 1 1578 224 60 69 chrX 43617698 43618339 -118981591 - L1M4 LINE L1 -5448 1411 798 306 284 108 34 chrX 43618342 43618518 -118981412 - L1M4 LINE L1 -6660 199 11 579 101 0 0 chrX 43618631 43618710 -118981220 + L1MC1 LINE L1 6255 6333 0 1807 170 3 3 chrX 43618812 43619124 -118980806 + AluJb SINE Alu 1 312 0 2149 116 3 7 chrX 43619211 43619514 -118980416 - AluSq SINE Alu -11 302 1 343 109 0 0 chrX 43619547 43619602 -118980328 + Alu SINE Alu 246 300 -2 1145 313 50 39 chrX 43619755 43620037 -118979893 - L1M4 LINE L1 -1089 5057 4780 2328 87 3 32 chrX 43620037 43620348 -118979582 - AluSq SINE Alu -11 302 1 1145 313 50 39 chrX 43620348 43620949 -118978981 - L1M4 LINE L1 -1366 4780 4164 518 208 85 39 chrX 43620961 43621091 -118978839 - L2 LINE L2 0 3313 3178 2652 192 6 64 chrX 43621133 43621184 -118978746 - MLT1F LTR MaLR -26 516 464 1201 172 72 79 chrX 43621184 43621474 -118978456 + AluJo SINE Alu 1 288 -24 2652 192 6 64 chrX 43621474 43621956 -118977974 - MLT1F LTR MaLR -78 464 13 2427 104 150 5 chrX 43621956 43622330 -118977600 + MSTA LTR MaLR 1 428 0 2652 192 6 64 chrX 43622330 43622343 -118977587 - MLT1F LTR MaLR -529 13 1 483 213 37 0 chrX 43622518 43622626 -118977304 - MER20B DNA MER1_type -15 768 657 1318 222 10 113 chrX 43622630 43623117 -118976813 - L2 LINE L2 -405 2909 2473 330 162 29 52 chrX 43623660 43623796 -118976134 + (TATAA)n Simple_repeat Simple_repeat 5 137 0 282 150 68 14 chrX 43623799 43623946 -118975984 + (TTATA)n Simple_repeat Simple_repeat 3 157 0 201 104 42 42 chrX 43623949 43623997 -118975933 + (TATAA)n Simple_repeat Simple_repeat 3 50 0 306 0 0 0 chrX 43624030 43624064 -118975866 + (TG)n Simple_repeat Simple_repeat 1 34 0 180 369 73 15 chrX 43624534 43624740 -118975190 - L2 LINE L2 -337 2977 2760 697 273 60 9 chrX 43624744 43624960 -118974970 - MIR SINE MIR 0 262 36 1785 154 7 0 chrX 43626284 43626586 -118973344 - AluJb SINE Alu 0 304 1 2328 107 0 0 chrX 43626975 43627284 -118972646 + AluSc SINE Alu 1 309 0 2070 125 7 23 chrX 43627654 43627958 -118971972 - AluSx SINE Alu -13 299 1 319 246 44 18 chrX 43628352 43628466 -118971464 - L1ME4a LINE L1 -6 6115 5999 809 206 42 69 chrX 43628506 43628650 -118971280 - MIR SINE MIR -2 260 125 1866 163 10 0 chrX 43628650 43628945 -118970985 + AluJb SINE Alu 1 298 -14 809 206 42 69 chrX 43628945 43629062 -118970868 - MIR SINE MIR -137 125 6 1641 130 183 0 chrX 43629412 43629674 -118970256 - AluSx SINE Alu -2 310 1 407 306 153 19 chrX 43629680 43629889 -118970041 + MLT1L LTR MaLR 36 272 -343 278 173 49 74 chrX 43630761 43630842 -118969088 + LTR67 LTR ERVL 475 553 -4 271 176 46 23 chrX 43630852 43630934 -118968996 - MIR SINE MIR -51 157 108 257 184 0 0 chrX 43631289 43631338 -118968592 + L2 LINE L2 3223 3271 -1 281 246 231 31 chrX 43631436 43631566 -118968364 + MIR3 SINE MIR 17 172 -36 336 226 39 59 chrX 43631990 43632092 -118967838 + LTR67 LTR ERVL 456 555 -2 979 92 0 0 chrX 43632162 43632281 -118967649 + FLAM_C SINE Alu 1 119 -24 231 114 0 0 chrX 43632281 43632325 -118967605 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 196 312 80 43 chrX 43632374 43632512 -118967418 - L2 LINE L2 -406 2908 2766 1757 147 38 103 chrX 43632518 43632696 -118967234 - Charlie1 DNA MER1_type 0 2761 2573 2245 125 0 0 chrX 43632696 43633001 -118966929 + AluSx SINE Alu 1 305 -7 1757 147 38 103 chrX 43633001 43633165 -118966765 - Charlie1 DNA MER1_type -188 2573 2452 2161 130 0 22 chrX 43633165 43633481 -118966449 + AluSx SINE Alu 1 309 -3 1757 147 38 103 chrX 43633481 43633585 -118966345 - Charlie1 DNA MER1_type -309 2452 2343 275 352 0 0 chrX 43633583 43633654 -118966276 - Charlie1 DNA MER1_type -2690 71 1 * 196 320 90 8 chrX 43633802 43633924 -118966006 - L2 LINE L2 -646 2668 2537 1515 222 39 129 chrX 43634064 43634382 -118965548 - Charlie7 DNA MER1_type -1887 725 380 2228 106 0 31 chrX 43634382 43634417 -118965513 - AluSp SINE Alu -2 311 276 303 28 0 0 chrX 43634417 43634453 -118965477 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2228 106 0 31 chrX 43634453 43634738 -118965192 - AluSp SINE Alu -37 276 1 1515 222 39 129 chrX 43634738 43635058 -118964872 - Charlie7 DNA MER1_type -2232 380 162 6373 30 0 0 chrX 43635058 43635758 -118964172 - L1PA4 LINE L1 0 6155 5456 1515 222 39 129 chrX 43635758 43635869 -118964061 - Charlie7 DNA MER1_type -2450 162 43 5936 127 17 6 chrX 43635904 43636784 -118963146 + MER49 LTR ERV1 1 890 -33 1745 158 13 26 chrX 43636785 43637264 -118962666 + AluJb SINE Alu 1 475 0 284 0 28 0 chrX 43637267 43637303 -118962627 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 295 185 19 0 chrX 43637653 43637707 -118962223 + L2 LINE L2 3255 3309 -4 541 257 145 37 chrX 43637840 43638054 -118961876 - MLT1J LTR MaLR -37 474 238 186 43 0 0 chrX 43638353 43638376 -118961554 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 182 327 0 0 chrX 43638376 43638428 -118961502 - L2 LINE L2 -13 3300 3249 856 124 15 15 chrX 43638723 43638860 -118961070 + FRAM SINE Alu 21 157 -19 730 200 68 63 chrX 43639550 43639755 -118960175 + MIR SINE MIR 57 262 0 295 227 0 40 chrX 43640522 43640597 -118959333 - L2 LINE L2 0 3272 3201 297 311 30 30 chrX 43640602 43640734 -118959196 - L2 LINE L2 -260 3012 2881 271 327 105 12 chrX 43640821 43640983 -118958947 + MIR SINE MIR 82 258 -4 832 110 93 0 chrX 43641111 43641229 -118958701 - FLAM_C SINE Alu -4 129 1 3386 209 68 45 chrX 43641746 43642207 -118957723 - L1MDa LINE L1 -4179 2361 1912 2149 93 52 3 chrX 43642207 43642498 -118957432 + L1PA16 LINE L1 5853 6157 -9 3386 209 68 45 chrX 43642498 43643111 -118956819 - L1MDa LINE L1 -4628 1912 1262 2005 141 0 0 chrX 43643137 43643427 -118956503 + AluJb SINE Alu 1 290 -22 287 261 80 43 chrX 43643432 43643570 -118956360 + L1MD2 LINE L1 2329 2471 -3925 582 288 19 19 chrX 43643571 43643776 -118956154 + L1MD2 LINE L1 3462 3666 -2549 3896 208 70 39 chrX 43643777 43644908 -118955022 + L1MD2 LINE L1 5148 6321 -107 1773 171 0 20 chrX 43644908 43645201 -118954729 + AluJb SINE Alu 1 287 -25 3896 208 70 39 chrX 43645201 43645300 -118954630 + L1MD2 LINE L1 6321 6415 -13 * 4636 150 14 8 chrX 43645299 43646153 -118953777 - L1MA9 LINE L1 -743 5403 4583 * 5345 117 27 37 chrX 43646147 43647022 -118952908 + L1MA9 LINE L1 5435 6312 0 904 293 64 48 chrX 43647499 43647658 -118952272 - L1MC4a LINE L1 -1884 5924 5769 1979 152 0 7 chrX 43647658 43647955 -118951975 - AluJb SINE Alu -17 295 1 904 293 64 48 chrX 43647955 43648276 -118951654 - L1MC4a LINE L1 -2039 5769 5436 3465 89 13 0 chrX 43648697 43649144 -118950786 + L1PA16 LINE L1 5710 6162 -4 441 273 67 13 chrX 43649420 43649570 -118950360 + MIR SINE MIR 105 262 0 1879 213 95 32 chrX 43649653 43650179 -118949751 - LTR8 LTR ERV1 0 691 133 761 124 19 0 chrX 43650180 43650285 -118949645 + AluSx SINE Alu 2 108 -205 1153 119 0 0 chrX 43650337 43650488 -118949442 + AluSx SINE Alu 113 263 -49 463 127 28 0 chrX 43650491 43650562 -118949368 - LTR8A LTR ERV1 -654 73 1 2701 81 46 44 chrX 43650982 43651550 -118948380 - MER51A LTR ERV1 0 634 1 2902 127 23 26 chrX 43651796 43652401 -118947529 + MER4E LTR ERV1 2 779 0 198 0 0 0 chrX 43652401 43652423 -118947507 + (T)n Simple_repeat Simple_repeat 1 22 0 584 186 20 0 chrX 43652619 43652721 -118947209 + MER5A DNA MER1_type 9 112 -77 206 255 266 11 chrX 43652645 43652739 -118947191 - MER5A DNA MER1_type -23 166 49 * 1509 163 73 35 chrX 43652965 43653253 -118946677 + AluJb SINE Alu 1 299 -13 896 211 22 93 chrX 43653299 43653569 -118946361 - MIR SINE MIR -7 255 5 293 279 56 22 chrX 43654439 43654623 -118945307 + HAL1b LINE L1 1198 1299 -49 1754 149 0 4 chrX 43654680 43654941 -118944989 - AluJb SINE Alu -16 296 37 1988 125 119 9 chrX 43654942 43655279 -118944651 + MER51B LTR ERV1 2 375 -2 303 134 0 19 chrX 43655281 43655347 -118944583 - AluJb SINE Alu -268 40 1 867 241 0 0 chrX 43655477 43655647 -118944283 - MLT1B LTR MaLR -4 386 217 1553 149 127 38 chrX 43655648 43656259 -118943671 + LTR8A LTR ERV1 2 727 0 570 238 88 25 chrX 43656357 43656517 -118943413 - MLT1B LTR MaLR -204 170 1 4350 106 3 54 chrX 43656543 43657186 -118942744 - MER4B LTR ERV1 0 610 1 225 299 52 13 chrX 43657196 43657273 -118942657 - MIR SINE MIR -44 218 139 197 219 0 0 chrX 43657296 43657337 -118942593 - L2 LINE L2 -16 3297 3257 1145 198 60 8 chrX 43657339 43657591 -118942339 + MLT1E-int LTR MaLR 342 606 -765 887 277 93 95 chrX 43657790 43658486 -118941444 + MLT1E-int LTR MaLR 677 1371 0 556 194 0 19 chrX 43658486 43658589 -118941341 + MLT1E LTR MaLR 1 101 -492 1890 189 27 11 chrX 43658743 43659108 -118940822 + MLT2D LTR ERVL 3 373 -41 252 86 0 0 chrX 43659116 43659151 -118940779 + (CA)n Simple_repeat Simple_repeat 1 35 0 296 167 0 0 chrX 43659151 43659199 -118940731 + MLT2D LTR ERVL 350 397 0 1496 206 57 7 chrX 43659202 43659498 -118940432 + MLT1E LTR MaLR 283 593 0 592 287 45 49 chrX 43659642 43659889 -118940041 + MIR SINE MIR 1 246 -16 605 254 0 23 chrX 43660131 43660261 -118939669 + L2 LINE L2 3186 3312 -1 905 244 28 40 chrX 43660529 43660779 -118939151 - MIR SINE MIR -14 248 2 268 277 64 21 chrX 43660815 43660909 -118939021 + L2 LINE L2 3169 3266 -6 236 277 48 48 chrX 43660932 43661015 -118938915 - L2 LINE L2 -3 3310 3228 937 130 30 30 chrX 43661026 43661195 -118938735 + FRAM SINE Alu 1 169 -7 696 301 103 32 chrX 43661196 43661533 -118938397 - L2 LINE L2 -102 3211 2827 2925 129 50 5 chrX 43661533 43661975 -118937955 - MLT1C LTR MaLR -1 466 5 696 301 103 32 chrX 43661975 43662139 -118937791 - L2 LINE L2 -486 2827 2676 180 343 180 12 chrX 43662706 43662878 -118937052 + MIR SINE MIR 12 212 -50 1738 149 4 0 chrX 43663358 43663620 -118936310 + AluJb SINE Alu 31 293 -19 417 258 0 10 chrX 43663666 43663763 -118936167 + L2 LINE L2 3172 3267 -5 439 338 0 0 chrX 43663863 43663996 -118935934 - MIR SINE MIR -71 191 59 358 191 12 60 chrX 43664195 43664279 -118935651 - L2 LINE L2 -9 3263 3184 226 248 60 120 chrX 43664366 43664483 -118935447 - MER5A DNA MER1_type -63 126 17 903 159 0 8 chrX 43664799 43664931 -118934999 + FLAM_C SINE Alu 2 132 -1 314 206 272 0 chrX 43665415 43665507 -118934423 - MER94 DNA DNA -15 119 3 629 258 60 43 chrX 43667175 43667408 -118932522 - MIR SINE MIR -25 237 1 184 303 71 10 chrX 43668758 43668857 -118931073 + L3 LINE CR1 1450 1554 -23 22 0 0 0 chrX 43669214 43669236 -118930694 + AT_rich Low_complexity Low_complexity 1 22 0 2207 108 0 23 chrX 43669622 43669929 -118930001 + AluSc SINE Alu 1 300 -9 198 0 0 0 chrX 43670290 43670312 -118929618 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 273 292 83 121 chrX 43674309 43674672 -118925258 + L2 LINE L2 2919 3267 -5 429 285 22 51 chrX 43674875 43675012 -118924918 + MIR SINE MIR 20 152 -56 1687 196 6 6 chrX 43676323 43676635 -118923295 - AluJb SINE Alu 0 312 1 760 235 121 79 chrX 43676679 43677134 -118922796 - L1ME4a LINE L1 0 6121 5648 195 69 0 0 chrX 43677154 43677183 -118922747 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 539 283 115 16 chrX 43677901 43678092 -118921838 - MIR SINE MIR 0 262 53 396 149 40 0 chrX 43678891 43678965 -118920965 - MER116 DNA Mariner 0 80 4 217 286 0 0 chrX 43680860 43680916 -118919014 + GA-rich Low_complexity Low_complexity 1 56 0 1846 178 0 6 chrX 43681555 43681869 -118918061 + AluJb SINE Alu 1 312 0 2147 146 52 0 chrX 43681885 43682214 -118917716 + MER7A DNA MER2_type 3 346 0 1025 197 83 89 chrX 43682419 43682779 -118917151 - L1MC4 LINE L1 -3 8039 7682 889 274 80 29 chrX 43683585 43683626 -118916304 - L1MC4a LINE L1 -96 6025 5988 2210 126 0 0 chrX 43683626 43683928 -118916002 + AluJb SINE Alu 1 302 -10 889 274 80 29 chrX 43683928 43684361 -118915569 - L1MC4a LINE L1 -133 5988 5532 1455 185 59 20 chrX 43686181 43686522 -118913408 - L1MA9 LINE L1 -38 6274 5921 2233 42 0 4 chrX 43687157 43687418 -118912512 + AluY SINE Alu 42 301 -10 1215 181 3 101 chrX 43687548 43687886 -118912044 + L1MD2 LINE L1 6025 6329 -30 1502 160 30 4 chrX 43687907 43688169 -118911761 - AluJo SINE Alu -32 280 12 1329 89 0 0 chrX 43688196 43688364 -118911566 - AluSx SINE Alu -15 297 130 207 0 0 0 chrX 43688389 43688412 -118911518 + (T)n Simple_repeat Simple_repeat 1 23 0 925 94 47 0 chrX 43688412 43688539 -118911391 - AluSx SINE Alu -179 133 1 324 0 0 0 chrX 43688583 43688619 -118911311 + (CA)n Simple_repeat Simple_repeat 2 37 0 258 32 0 0 chrX 43688618 43688649 -118911281 + (TC)n Simple_repeat Simple_repeat 1 31 0 * 21 71 0 0 chrX 43688806 43688848 -118911082 + AT_rich Low_complexity Low_complexity 1 42 0 1564 182 45 17 chrX 43689407 43689527 -118910403 + AluJo SINE Alu 1 116 -196 180 0 0 0 chrX 43689527 43689547 -118910383 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1564 182 45 17 chrX 43689547 43689717 -118910213 + AluJo SINE Alu 116 299 -13 252 86 0 0 chrX 43690831 43690866 -118909064 + (TA)n Simple_repeat Simple_repeat 2 36 0 221 386 53 3 chrX 43691301 43691444 -118908486 - MIR SINE MIR -72 136 4 506 57 143 0 chrX 43692025 43692095 -118907835 - MADE1 DNA Mariner 0 80 1 1224 191 23 5 chrX 43692318 43692538 -118907392 + MER58A DNA MER1_type 1 224 0 865 251 0 23 chrX 43692678 43692893 -118907037 - MIR SINE MIR -49 213 4 262 268 122 0 chrX 43695287 43695369 -118904561 + MER5A DNA MER1_type 91 182 -7 772 33 11 0 chrX 43695946 43696036 -118903894 + L1PA5 LINE L1 6058 6148 -6 237 370 111 15 chrX 43697074 43697209 -118902721 + L2 LINE L2 3116 3263 -9 358 194 27 39 chrX 43698959 43699086 -118900844 + L1ME3A LINE L1 5814 5945 -225 295 274 55 43 chrX 43699152 43699316 -118900614 + L1ME3A LINE L1 5963 6128 -42 40988 33 21 1 chrX 43700065 43706097 -118893833 - L1PA2 LINE L1 0 6155 1 23 68 0 0 chrX 43707149 43707193 -118892737 + AT_rich Low_complexity Low_complexity 1 44 0 219 36 0 0 chrX 43709914 43709942 -118889988 + (TA)n Simple_repeat Simple_repeat 2 29 0 325 303 49 0 chrX 43709950 43710072 -118889858 + L1ME4a LINE L1 5638 5765 -2043 357 335 119 8 chrX 43710092 43710328 -118889602 + L1ME4a LINE L1 5835 6096 -25 573 253 30 36 chrX 43710561 43710727 -118889203 + MIR3 SINE MIR 38 202 -6 1916 218 58 20 chrX 43711171 43711708 -118888222 + L1MC3 LINE L1 4 560 -5485 1080 181 34 47 chrX 43711780 43712100 -118887830 + L1MC3 LINE L1 553 868 -5177 1746 209 79 29 chrX 43712117 43712764 -118887166 + L1M4 LINE L1 2797 3475 -2671 608 247 53 21 chrX 43712784 43713027 -118886903 + L1MC3 LINE L1 3048 3298 -3266 773 167 195 0 chrX 43713034 43713249 -118886681 - L1MA8 LINE L1 -4 6308 6052 11882 166 44 36 chrX 43713288 43715019 -118884911 + L1MC3 LINE L1 3917 5632 -2571 2409 62 3 13 chrX 43715019 43715323 -118884607 + AluY SINE Alu 1 301 -10 11882 166 44 36 chrX 43715323 43715710 -118884220 + L1MC3 LINE L1 5632 6014 -2189 180 0 0 0 chrX 43715710 43715730 -118884200 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 11882 166 44 36 chrX 43715730 43716510 -118883420 + L1MC3 LINE L1 6014 6786 -1417 1984 108 64 50 chrX 43716510 43716852 -118883078 - MER7A DNA MER2_type 0 346 2 11882 166 44 36 chrX 43716852 43717606 -118882324 + L1MC3 LINE L1 6786 7594 -609 2189 104 0 62 chrX 43717606 43717963 -118881967 + MER1B DNA MER1_type 3 337 0 11882 166 44 36 chrX 43717963 43718408 -118881522 + L1MC3 LINE L1 7594 8034 -169 498 295 112 93 chrX 43719030 43719559 -118880371 + L2 LINE L2 2435 2973 -341 225 94 0 0 chrX 43719688 43719720 -118880210 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 225 170 0 57 chrX 43720218 43720271 -118879659 - MARNA DNA Mariner -529 57 8 257 238 0 32 chrX 43720361 43720424 -118879506 + MIR SINE MIR 106 166 -96 710 261 81 54 chrX 43720739 43721111 -118878819 + L2 LINE L2 2928 3309 -4 543 250 69 25 chrX 43721317 43721521 -118878409 + LTR7 LTR ERV1 238 450 0 538 198 0 17 chrX 43721783 43721899 -118878031 - MIR SINE MIR 0 262 149 275 343 46 0 chrX 43721933 43722041 -118877889 + L2 LINE L2 3201 3313 0 451 218 89 47 chrX 43722312 43722569 -118877361 + L1MC/D LINE L1 5264 5531 -2277 627 256 17 0 chrX 43722570 43722746 -118877184 + L1MC/D LINE L1 5643 5821 -1987 908 225 67 42 chrX 43722808 43723478 -118876452 + L1ME1 LINE L1 5298 6148 -18 2220 161 29 2 chrX 43723718 43724139 -118875791 - L1MB4 LINE L1 -26 6154 5723 380 302 69 13 chrX 43724873 43725032 -118874898 - MIR SINE MIR -3 259 92 195 245 43 64 chrX 43725196 43725290 -118874640 - L2 LINE L2 -1344 1970 1879 864 64 24 0 chrX 43725313 43725438 -118874492 + L1MA6 LINE L1 6173 6300 0 469 216 67 8 chrX 43725736 43725870 -118874060 + LTR16A1 LTR ERVL 316 457 0 2474 83 0 0 chrX 43725988 43726290 -118873640 + AluSx SINE Alu 1 302 -10 2356 185 69 63 chrX 43726414 43726678 -118873252 + MER99 DNA DNA 196 457 -371 1780 154 0 49 chrX 43726678 43726984 -118872946 - AluJb SINE Alu -21 291 1 2356 185 69 63 chrX 43726984 43727342 -118872588 + MER99 DNA DNA 457 822 -6 1270 251 6 9 chrX 43727380 43727727 -118872203 - L1MC4 LINE L1 -463 7579 7234 21 36 0 0 chrX 43727749 43727777 -118872153 + AT_rich Low_complexity Low_complexity 1 28 0 1554 227 89 23 chrX 43727777 43728296 -118871634 - L1MC4 LINE L1 -989 7053 6501 211 346 38 38 chrX 43730143 43730276 -118869654 + L2 LINE L2 2720 2852 -462 234 258 258 0 chrX 43731699 43731792 -118868138 + L2 LINE L2 3137 3253 -19 603 156 16 8 chrX 43732091 43732213 -118867717 - Charlie1 DNA MER1_type 0 2761 2639 5363 23 0 0 chrX 43732214 43732866 -118867064 - L1PA3 LINE L1 -1408 4738 4087 7708 22 0 0 chrX 43732866 43734257 -118865673 + L1PA3 LINE L1 4760 6150 -5 703 227 91 36 chrX 43734325 43734545 -118865385 - Charlie1 DNA MER1_type -285 2476 7 346 304 32 20 chrX 43734999 43735246 -118864684 + L1 LINE L1 3667 3916 -2230 401 310 146 16 chrX 43735386 43736012 -118863918 + L1 LINE L1 4088 4791 -1355 3149 23 3 5 chrX 43736014 43736404 -118863526 - L1PA4 LINE L1 -432 5723 5335 3471 26 22 0 chrX 43736404 43736819 -118863111 + L1PA4 LINE L1 5730 6154 -1 4321 166 68 150 chrX 43737236 43738663 -118861267 + L1MD3 LINE L1 6 1274 -5152 2221 114 0 16 chrX 43738663 43738978 -118860952 + AluSg SINE Alu 1 310 0 4321 166 68 150 chrX 43738978 43739239 -118860691 + L1MD3 LINE L1 1274 1555 -4871 3515 217 22 5 chrX 43739244 43740192 -118859738 + L1MD3 LINE L1 2559 3522 -2904 322 301 0 31 chrX 43740242 43740416 -118859514 + GA-rich Low_complexity Low_complexity 1 280 0 41132 29 22 1 chrX 43740475 43746504 -118853426 + L1HS LINE L1 1 6155 0 202 200 0 0 chrX 43746504 43746544 -118853386 + GA-rich Low_complexity Low_complexity 2 41 0 422 172 35 11 chrX 43746581 43746668 -118853262 + L1MA5A LINE L1 6204 6292 -5 2970 208 40 27 chrX 43746668 43749377 -118850553 + L1MD3 LINE L1 3559 5584 -842 36 53 0 0 chrX 43749390 43749447 -118850483 + AT_rich Low_complexity Low_complexity 1 57 0 717 171 97 0 chrX 43749450 43749626 -118850304 + L1MC2 LINE L1 6150 6342 -2 1070 122 24 0 chrX 43749745 43749909 -118850021 - MER5A DNA MER1_type 0 189 22 192 135 0 0 chrX 43750371 43750408 -118849522 + (GA)n Simple_repeat Simple_repeat 1 37 0 201 300 50 25 chrX 43750805 43750885 -118849045 + L2 LINE L2 3214 3295 -18 225 337 12 48 chrX 43751589 43751672 -118848258 + L2 LINE L2 3171 3250 -22 210 289 0 13 chrX 43752063 43752139 -118847791 + (TGAA)n Simple_repeat Simple_repeat 1 75 0 210 302 135 0 chrX 43752513 43752609 -118847321 + L2 LINE L2 3144 3252 -20 284 102 20 0 chrX 43752773 43752822 -118847108 + (GA)n Simple_repeat Simple_repeat 1 50 0 825 196 92 0 chrX 43753118 43753291 -118846639 - MER5A DNA MER1_type 0 189 1 310 313 127 0 chrX 43754590 43754724 -118845206 + L2 LINE L2 3158 3308 -5 298 308 23 38 chrX 43755054 43755187 -118844743 + L2 LINE L2 3182 3312 -1 1954 169 0 6 chrX 43755436 43755750 -118844180 + AluJo SINE Alu 1 312 0 296 117 52 26 chrX 43755750 43755827 -118844103 + GA-rich Low_complexity Low_complexity 2 80 0 309 373 10 0 chrX 43755968 43756070 -118843860 + L2 LINE L2 3134 3236 -36 255 336 43 43 chrX 43756613 43756729 -118843201 + L2 LINE L2 3137 3252 -20 313 274 39 39 chrX 43756787 43756889 -118843041 + L2 LINE L2 3143 3244 -28 455 312 40 0 chrX 43757299 43757424 -118842506 + L2 LINE L2 3141 3270 -2 252 293 159 39 chrX 43757839 43757850 -118842080 + MIR SINE MIR 1 9 -253 845 201 112 0 chrX 43757850 43758019 -118841911 - MER5A DNA MER1_type 0 189 2 252 293 159 39 chrX 43758019 43758215 -118841715 + MIR SINE MIR 9 233 -29 306 0 0 0 chrX 43758504 43758538 -118841392 + (TG)n Simple_repeat Simple_repeat 1 34 0 549 30 0 0 chrX 43758540 43758607 -118841323 + (GA)n Simple_repeat Simple_repeat 2 68 0 886 232 97 4 chrX 43759720 43759957 -118839973 + L2 LINE L2 2456 2714 -600 3329 194 70 56 chrX 43760033 43761058 -118838872 + L1MC5 LINE L1 6611 7653 -308 2301 98 0 7 chrX 43761058 43761355 -118838575 - AluSq SINE Alu -16 297 3 3329 194 70 56 chrX 43761355 43761429 -118838501 + L1MC5 LINE L1 7653 7725 -236 256 234 91 0 chrX 43761461 43761538 -118838392 + L2 LINE L2 2844 2927 -345 * 806 199 71 103 chrX 43761523 43761804 -118838126 + L2 LINE L2 3042 3313 0 405 246 82 0 chrX 43763035 43763145 -118836785 - MIR SINE MIR -21 241 123 383 0 21 0 chrX 43763254 43763301 -118836629 + (CA)n Simple_repeat Simple_repeat 1 48 0 327 78 0 0 chrX 43763302 43763353 -118836577 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 3010 262 30 113 chrX 43763398 43764184 -118835746 - L2 LINE L2 -727 2587 1737 530 30 0 0 chrX 43764184 43764251 -118835679 - L1P LINE L1 -1125 5021 4955 2151 38 0 11 chrX 43764251 43764515 -118835415 + L1PA5 LINE L1 5887 6149 -5 3010 262 30 113 chrX 43764515 43765066 -118834864 - L2 LINE L2 -1575 1739 1300 538 287 32 11 chrX 43765188 43765376 -118834554 - MIR SINE MIR -58 204 13 180 152 0 0 chrX 43767316 43767349 -118832581 + GA-rich Low_complexity Low_complexity 3 35 0 465 269 143 11 chrX 43767741 43767923 -118832007 + MIR SINE MIR 53 258 -4 1907 148 18 0 chrX 43768162 43768445 -118831485 + AluJo SINE Alu 1 288 -24 180 340 10 58 chrX 43769718 43769821 -118830109 + L3b LINE CR1 1452 1549 -34 195 311 106 42 chrX 43771469 43771752 -118828178 + L2 LINE L2 1965 2265 -1049 217 330 45 11 chrX 43772208 43772296 -118827634 + L2 LINE L2 2982 3072 -200 195 42 0 0 chrX 43773758 43773782 -118826148 + (A)n Simple_repeat Simple_repeat 1 24 0 310 219 31 10 chrX 43774181 43774277 -118825653 + L1ME3A LINE L1 6068 6165 -5 4972 101 15 9 chrX 43774342 43775245 -118824685 + L1PB1 LINE L1 5063 5938 -213 1863 149 0 0 chrX 43775245 43775514 -118824416 + AluSx SINE Alu 1 269 -43 4972 101 15 9 chrX 43775514 43775678 -118824252 + L1PB1 LINE L1 5938 6100 -51 991 86 16 0 chrX 43775682 43775810 -118824120 + AluSg/x SINE Alu 165 294 -18 22 0 0 0 chrX 43775859 43775881 -118824049 + AT_rich Low_complexity Low_complexity 1 22 0 1344 134 0 23 chrX 43776691 43776908 -118823022 + AluJo SINE Alu 87 298 -14 1075 220 93 7 chrX 43777114 43777405 -118822525 + MER5C DNA MER1_type 3 318 -6 246 159 48 48 chrX 43779161 43779224 -118820706 - MER103 DNA DNA -78 88 26 1698 174 22 41 chrX 43781067 43781384 -118818546 + AluJo SINE Alu 2 312 0 231 146 0 0 chrX 43781388 43781429 -118818501 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 21 0 0 0 chrX 43781487 43781508 -118818422 + AT_rich Low_complexity Low_complexity 1 21 0 303 270 59 64 chrX 43781544 43781748 -118818182 + L1M4 LINE L1 3628 3830 -2316 209 100 50 17 chrX 43782276 43782336 -118817594 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 316 159 16 0 chrX 43782947 43783010 -118816920 + L1MA10 LINE L1 6261 6324 -10 24 32 0 0 chrX 43784402 43784433 -118815497 + AT_rich Low_complexity Low_complexity 1 31 0 811 187 17 62 chrX 43786062 43786351 -118813579 + L1MA8 LINE L1 6010 6285 -6 296 280 0 13 chrX 43787438 43787513 -118812417 - MIR3 SINE MIR -28 180 107 422 288 158 54 chrX 43787524 43787654 -118812276 - MIR SINE MIR -16 246 131 1006 179 0 17 chrX 43787654 43787833 -118812097 - MER45A DNA AcHobo -2 176 1 422 288 158 54 chrX 43787833 43787924 -118812006 - MIR SINE MIR -131 131 2 293 319 3 12 chrX 43787927 43788020 -118811910 - MIR SINE MIR -90 118 29 367 292 0 18 chrX 43788458 43788571 -118811359 + MIR SINE MIR 32 142 -120 852 176 74 6 chrX 43789686 43789862 -118810068 - MER5A DNA MER1_type -1 188 1 864 192 111 15 chrX 43789895 43790093 -118809837 - MER20 DNA MER1_type 0 219 3 225 333 303 4 chrX 43790217 43790451 -118809479 - L2 LINE L2 -35 3237 2934 1007 66 22 7 chrX 43790723 43790860 -118809070 - MER85 DNA T2_type 0 139 1 454 294 61 50 chrX 43790867 43791047 -118808883 + L2 LINE L2 3087 3268 -4 271 211 11 142 chrX 43791053 43791243 -118808687 + L2 LINE L2 2331 2495 -819 522 266 68 13 chrX 43791300 43791478 -118808452 + MIR SINE MIR 1 190 -68 375 271 64 51 chrX 43791695 43792009 -118807921 + L1ME4a LINE L1 5617 5934 -187 * 2026 148 71 0 chrX 43791735 43792127 -118807803 + L1MB7 LINE L1 5647 6066 -118 508 123 0 12 chrX 43792134 43792215 -118807715 - Tigger5 DNA MER2_type 0 2323 2244 458 190 7 36 chrX 43792212 43792357 -118807573 - Tigger5 DNA MER2_type -2129 194 1 * 529 119 0 0 chrX 43792357 43792441 -118807489 + L1MB8 LINE L1 6095 6178 0 1340 41 41 0 chrX 43792446 43792616 -118807314 + L1PA4 LINE L1 5976 6152 -3 359 287 85 58 chrX 43793299 43793487 -118806443 + MIR SINE MIR 20 212 -50 864 202 50 57 chrX 43793677 43793822 -118806108 + L1MC4 LINE L1 7759 7903 -139 414 0 0 0 chrX 43793822 43793868 -118806062 + (CA)n Simple_repeat Simple_repeat 2 47 0 864 202 50 57 chrX 43793868 43794004 -118805926 + L1MC4 LINE L1 7903 8038 -4 899 242 78 17 chrX 43794040 43794333 -118805597 + L1MB8 LINE L1 13 323 -6536 1978 204 63 11 chrX 43794399 43794677 -118805253 + L1MB8 LINE L1 4745 5007 -1950 485 100 11 0 chrX 43794677 43794767 -118805163 + (TA)n Simple_repeat Simple_repeat 2 92 0 1978 204 63 11 chrX 43794767 43795046 -118804884 + L1MB8 LINE L1 5007 5331 -1626 3579 142 43 31 chrX 43795045 43795726 -118804204 + L1MB8 LINE L1 6292 6980 -9 2805 224 46 25 chrX 43795732 43796603 -118803327 + L1M4 LINE L1 2148 3044 -3102 2318 126 0 0 chrX 43796603 43796912 -118803018 + AluSx SINE Alu 1 309 -3 2805 224 46 25 chrX 43796912 43797014 -118802916 + L1M4 LINE L1 3044 3142 -3004 11955 22 0 1 chrX 43797016 43798486 -118801444 - L1HS LINE L1 -858 5288 3820 7604 0 0 0 chrX 43798484 43799366 -118800564 + L1HS LINE L1 5274 6155 0 * 3626 233 75 13 chrX 43799352 43800700 -118799230 + L1M4 LINE L1 3072 4503 -1643 * 208 87 22 65 chrX 43801168 43801214 -118798716 + MIR SINE MIR 206 249 -13 28 0 0 0 chrX 43801218 43801246 -118798684 + AT_rich Low_complexity Low_complexity 1 28 0 895 261 29 1 chrX 43801408 43801630 -118798300 + MIR SINE MIR 9 234 -28 22 35 0 0 chrX 43801636 43801665 -118798265 + AT_rich Low_complexity Low_complexity 1 29 0 216 250 0 0 chrX 43801893 43801941 -118797989 + L2 LINE L2 3261 3308 -5 390 274 56 13 chrX 43803269 43803464 -118796466 - LTR65 LTR ERV1 -6 663 403 394 220 37 0 chrX 43803594 43803703 -118796227 - LTR65 LTR ERV1 -499 170 58 594 315 34 21 chrX 43804441 43804679 -118795251 + MIR SINE MIR 6 246 -16 609 367 94 50 chrX 43804974 43806458 -118793472 - L2 LINE L2 -1401 1913 366 1538 203 50 87 chrX 43807652 43808215 -118791715 + L1MD2 LINE L1 5803 6344 -15 669 337 61 76 chrX 43808233 43808666 -118791264 + L3 LINE CR1 564 985 -592 2355 90 0 3 chrX 43808666 43808966 -118790964 - AluSx SINE Alu -13 299 1 669 337 61 76 chrX 43808966 43809205 -118790725 + L3 LINE CR1 985 1226 -351 354 243 162 15 chrX 43809346 43809482 -118790448 + L3 LINE CR1 1257 1412 -165 747 232 50 6 chrX 43809521 43809702 -118790228 - MIR SINE MIR -51 211 23 282 261 0 76 chrX 43810873 43810965 -118788965 - MIR SINE MIR -86 122 38 315 256 73 0 chrX 43811002 43811084 -118788846 + MIR SINE MIR 63 150 -58 265 264 0 0 chrX 43811193 43811246 -118788684 - Zaphod DNA AcHobo -1 4030 3978 938 268 53 38 chrX 43811252 43811526 -118788404 - MER115 DNA AcHobo -257 436 155 1417 103 75 0 chrX 43811526 43811740 -118788190 + MER30 DNA MER1_type 1 230 0 938 268 53 38 chrX 43811740 43811804 -118788126 - MER115 DNA AcHobo -538 155 93 22 35 0 0 chrX 43811954 43811983 -118787947 + AT_rich Low_complexity Low_complexity 1 29 0 542 267 26 10 chrX 43812166 43812361 -118787569 + L1ME4a LINE L1 5604 5801 -320 1812 197 0 0 chrX 43812377 43812687 -118787243 + AluJo SINE Alu 1 310 -2 2385 67 14 3 chrX 43812797 43813094 -118786836 + AluSp SINE Alu 1 300 -13 21 0 0 0 chrX 43813243 43813264 -118786666 + AT_rich Low_complexity Low_complexity 1 21 0 233 303 39 122 chrX 43814269 43814523 -118785407 + L2 LINE L2 2992 3224 -48 727 152 0 21 chrX 43814752 43814897 -118785033 - MER33 DNA MER1_type 0 324 183 1871 117 18 20 chrX 43814902 43815275 -118784655 + L1MA2 LINE L1 5958 6305 0 674 126 39 0 chrX 43815285 43815412 -118784518 - MER33 DNA MER1_type -132 192 61 611 238 116 0 chrX 43815415 43815587 -118784343 + MIR SINE MIR 70 261 -1 295 374 0 41 chrX 43816136 43816259 -118783671 + MIR3 SINE MIR 10 127 -81 1352 154 19 0 chrX 43816633 43816847 -118783083 - MER20 DNA MER1_type 0 219 2 309 223 81 81 chrX 43817666 43817814 -118782116 + L1ME4a LINE L1 5974 6121 0 211 338 108 19 chrX 43817825 43818038 -118781892 - L2 LINE L2 -1106 2208 1977 226 231 48 115 chrX 43818079 43818183 -118781747 - MIR3 SINE MIR -13 195 99 199 240 67 13 chrX 43818389 43818464 -118781466 + L3 LINE CR1 362 440 -1137 345 253 202 15 chrX 43818464 43818662 -118781268 + L2 LINE L2 2127 2361 -953 394 309 62 12 chrX 43818679 43818841 -118781089 + L3 LINE CR1 404 573 -1004 2307 95 23 0 chrX 43818862 43819166 -118780764 + AluSp SINE Alu 1 311 -2 2191 221 78 28 chrX 43819212 43819777 -118780153 + MLT1E LTR MaLR 1 593 0 2143 113 3 3 chrX 43819927 43820220 -118779710 + AluSx SINE Alu 1 293 -19 1874 109 20 59 chrX 43820230 43820533 -118779397 + AluSc SINE Alu 1 291 -18 601 152 0 0 chrX 43820540 43820632 -118779298 + U6 snRNA snRNA 1 92 -15 215 373 79 16 chrX 43820686 43820812 -118779118 + L3 LINE CR1 932 1065 -512 14097 29 3 1 chrX 43821121 43823571 -118776359 + L1PA5 LINE L1 3695 6146 -8 207 0 0 0 chrX 43824040 43824063 -118775867 + (A)n Simple_repeat Simple_repeat 1 23 0 549 256 218 19 chrX 43824619 43824655 -118775275 - MIR SINE MIR 0 262 234 2026 123 21 0 chrX 43824655 43824939 -118774991 - AluSx SINE Alu -22 290 1 549 256 218 19 chrX 43824939 43825113 -118774817 - MIR SINE MIR -28 234 10 206 335 127 32 chrX 43825358 43825579 -118774351 - L2 LINE L2 -35 3237 2996 184 236 109 0 chrX 43825660 43825715 -118774215 - MIR SINE MIR -34 228 168 239 133 0 22 chrX 43825719 43825764 -118774166 + MER94 DNA DNA 6 49 -85 339 236 264 0 chrX 43825815 43825925 -118774005 - MIR SINE MIR -92 170 32 193 269 0 0 chrX 43825957 43826009 -118773921 - L2 LINE L2 -557 2757 2706 7040 31 3 1 chrX 43826202 43827794 -118772136 - L1PA5 LINE L1 -20 6134 4542 296 265 17 17 chrX 43828787 43828904 -118771026 - L1MC4a LINE L1 -1871 5937 5821 759 188 51 7 chrX 43828906 43829044 -118770886 - FRAM SINE Alu -38 138 1 196 263 26 53 chrX 43829880 43829956 -118769974 - MIR SINE MIR -50 212 139 * 284 310 0 23 chrX 43829947 43830034 -118769896 - L2 LINE L2 -2 3270 3186 816 302 81 36 chrX 43830097 43830611 -118769319 + L2 LINE L2 2773 3310 -3 472 246 53 86 chrX 43831884 43832071 -118767859 + MIR3 SINE MIR 3 183 -25 918 150 47 52 chrX 43832226 43832439 -118767491 - MIR SINE MIR -35 227 16 237 320 150 10 chrX 43832440 43832540 -118767390 - MIR SINE MIR -127 135 22 33 25 0 0 chrX 43832717 43832757 -118767173 + AT_rich Low_complexity Low_complexity 1 40 0 317 216 58 14 chrX 43833535 43833674 -118766256 - L1ME4a LINE L1 -1 6120 5976 1772 164 0 0 chrX 43833770 43834044 -118765886 + AluJb SINE Alu 3 276 -36 1583 135 22 94 chrX 43834057 43834376 -118765554 - AluJo SINE Alu -16 296 1 307 210 120 0 chrX 43834381 43834481 -118765449 - L1ME4a LINE L1 -299 5822 5711 253 211 224 0 chrX 43834737 43834813 -118765117 - MIR SINE MIR 0 262 170 718 203 55 6 chrX 43834833 43834996 -118764934 - MER5B DNA MER1_type -6 172 2 572 265 41 7 chrX 43834996 43835138 -118764792 - MIR SINE MIR -98 164 18 1248 199 21 8 chrX 43835141 43835377 -118764553 - MER8 DNA MER2_type 0 239 1 897 261 161 40 chrX 43835432 43835954 -118763976 - L1ME4a LINE L1 -246 5875 5291 307 270 90 11 chrX 43836248 43836337 -118763593 + MER5B DNA MER1_type 60 155 -23 377 333 16 24 chrX 43836458 43836581 -118763349 + L2 LINE L2 3150 3271 -1 402 263 144 38 chrX 43836925 43837043 -118762887 + MIR3 SINE MIR 18 159 -49 2455 50 0 0 chrX 43837043 43837340 -118762590 - AluY SINE Alu -14 297 1 402 263 144 38 chrX 43837340 43837381 -118762549 + MIR3 SINE MIR 159 194 -14 629 219 56 124 chrX 43837572 43837687 -118762243 - MIR SINE MIR 0 262 169 4246 110 14 1 chrX 43837687 43838340 -118761590 - L1MA4 LINE L1 -11 6289 5629 629 219 56 124 chrX 43838340 43838457 -118761473 - MIR SINE MIR -93 169 46 604 294 218 18 chrX 43838894 43839329 -118760601 + L2 LINE L2 2323 2844 -470 233 239 149 37 chrX 43841252 43841386 -118758544 + L1ME4a LINE L1 5965 6113 -8 2073 58 48 65 chrX 43841529 43841839 -118758091 + AluSx SINE Alu 1 305 -7 586 228 74 12 chrX 43843764 43843926 -118756004 - MIR SINE MIR -18 244 73 363 295 108 8 chrX 43844010 43844139 -118755791 - MIR SINE MIR -100 162 21 390 255 0 41 chrX 43844161 43844259 -118755671 - MIR SINE MIR -65 143 50 3923 141 55 5 chrX 43844361 43844998 -118754932 - LTR65 LTR ERV1 0 669 1 243 334 61 49 chrX 43845119 43845383 -118754547 - L2 LINE L2 -310 2962 2696 2199 86 18 0 chrX 43845522 43845801 -118754129 + AluSq SINE Alu 1 284 -29 624 215 230 20 chrX 43846252 43846452 -118753478 + MIR SINE MIR 21 262 0 262 236 0 18 chrX 43847144 43847199 -118752731 - L2 LINE L2 -17 3255 3202 1182 260 74 39 chrX 43847402 43847517 -118752413 + L1MC4a LINE L1 5361 5471 -2337 1959 134 0 0 chrX 43847517 43847792 -118752138 + AluSx SINE Alu 1 275 -37 243 88 0 0 chrX 43847798 43847832 -118752098 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1182 260 74 39 chrX 43847832 43848158 -118751772 + L1MC4a LINE L1 5475 5830 -1978 1759 187 10 3 chrX 43848158 43848458 -118751472 + AluJo SINE Alu 1 302 -10 1182 260 74 39 chrX 43848458 43848497 -118751433 + L1MC4a LINE L1 5830 5866 -1942 2226 107 0 10 chrX 43848671 43848969 -118750961 + AluSx SINE Alu 1 295 -17 1011 224 110 0 chrX 43849260 43849550 -118750380 - MER5C DNA MER1_type 0 324 3 257 311 25 56 chrX 43849643 43849804 -118750126 - MIR SINE MIR -52 210 55 542 226 0 90 chrX 43850350 43850527 -118749403 + L2 LINE L2 2717 2877 -437 27 0 0 0 chrX 43850745 43850772 -118749158 + AT_rich Low_complexity Low_complexity 1 27 0 197 208 0 83 chrX 43850859 43850907 -118749023 - L2 LINE L2 -18 3295 3252 2874 207 67 41 chrX 43850916 43851779 -118748151 - L1MDa LINE L1 -4853 1687 658 783 193 78 6 chrX 43851778 43851944 -118747986 - L1MDa LINE L1 -6354 186 9 * 3418 246 98 29 chrX 43851945 43853290 -118746640 + L2 LINE L2 1823 3246 -67 1692 111 4 4 chrX 43853313 43853548 -118746382 - AluSg/x SINE Alu -2 308 74 284 168 5 34 chrX 43853552 43853622 -118746308 + L1MD2 LINE L1 5569 5638 -695 1480 203 36 4 chrX 43854478 43854949 -118744981 + L1MD2 LINE L1 5815 6349 -10 2250 236 282 96 chrX 43854949 43856106 -118743824 - L2 LINE L2 -1485 1829 224 322 283 115 0 chrX 43856106 43856219 -118743711 + MER94 DNA DNA 2 127 -7 2250 236 282 96 chrX 43856219 43856486 -118743444 - L2 LINE L2 -3090 224 8 1312 261 18 9 chrX 43856859 43857185 -118742745 + L2 LINE L2 2128 2456 -858 1043 166 199 22 chrX 43857197 43857468 -118742462 - MER2 DNA MER2_type -26 319 1 1879 229 58 32 chrX 43857469 43858241 -118741689 + L2 LINE L2 2502 3308 -5 530 276 99 20 chrX 43858319 43858623 -118741307 - L1M4 LINE L1 -1717 4429 4102 7839 244 58 32 chrX 43858626 43859047 -118740883 - L1M4 LINE L1 -824 5322 4913 258 116 0 0 chrX 43859047 43859090 -118740840 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 7839 244 58 32 chrX 43859090 43859466 -118740464 - L1M4 LINE L1 -1233 4913 4548 2307 93 3 16 chrX 43859466 43859802 -118740128 - AluSp SINE Alu 0 313 1 7839 244 58 32 chrX 43859802 43861769 -118738161 - L1M4 LINE L1 -1598 4548 3023 5695 45 0 5 chrX 43861769 43862419 -118737511 + L1PA6 LINE L1 5506 6152 -2 7839 244 58 32 chrX 43862419 43862547 -118737383 - L1M4 LINE L1 -3123 3023 2900 2253 68 51 3 chrX 43862868 43863160 -118736770 + AluSg SINE Alu 1 306 -4 3276 246 59 38 chrX 43863181 43864354 -118735576 - L1MEc LINE L1 -4547 1849 653 3290 158 52 32 chrX 43864367 43865044 -118734886 + MER67C LTR ERV1 21 710 0 519 287 27 0 chrX 43865044 43865267 -118734663 - L1MEc LINE L1 -5740 656 378 236 212 24 47 chrX 43865333 43865365 -118734565 + T-rich Low_complexity Low_complexity 2 33 -51 486 116 0 0 chrX 43865365 43865434 -118734496 - L1MA9 LINE L1 -5 6307 6239 236 212 24 47 chrX 43865434 43865486 -118734444 + T-rich Low_complexity Low_complexity 33 84 0 810 182 176 0 chrX 43865555 43865635 -118734295 - L1MA9 LINE L1 -58 6254 6189 234 0 0 0 chrX 43865635 43865661 -118734269 + (TG)n Simple_repeat Simple_repeat 2 27 0 810 182 176 0 chrX 43865661 43865756 -118734174 - L1MA9 LINE L1 -123 6189 6048 * 1066 246 70 14 chrX 43865753 43866037 -118733893 - L1MEc LINE L1 -6086 310 11 3407 216 45 115 chrX 43866622 43866811 -118733119 + L1ME1 LINE L1 4448 4649 -1517 1851 140 49 83 chrX 43866811 43867197 -118732733 - THE1C LTR MaLR 0 375 3 6700 154 108 50 chrX 43867199 43868693 -118731237 - THE1C-int LTR MaLR 0 1580 1 2014 127 47 75 chrX 43868693 43869079 -118730851 - THE1C LTR MaLR 0 375 1 3407 216 45 115 chrX 43869079 43869830 -118730100 + L1ME1 LINE L1 4649 5452 -714 1800 188 0 6 chrX 43869830 43870144 -118729786 + AluJb SINE Alu 1 312 0 3407 216 45 115 chrX 43870144 43870263 -118729667 + L1ME1 LINE L1 5452 5578 -588 1971 124 35 0 chrX 43870263 43870363 -118729567 + AluSx SINE Alu 21 116 -196 213 65 0 0 chrX 43870363 43870394 -118729536 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1971 124 35 0 chrX 43870394 43870575 -118729355 + AluSx SINE Alu 116 312 0 3407 216 45 115 chrX 43870575 43871320 -118728610 + L1ME1 LINE L1 5578 6163 -3 1611 161 144 29 chrX 43871321 43871738 -118728192 - Charlie1b DNA MER1_type -47 476 12 1994 152 3 0 chrX 43872510 43872799 -118727131 + AluJo SINE Alu 1 290 -22 463 208 0 10 chrX 43872938 43873039 -118726891 - L1MCb LINE L1 -5375 670 571 1468 270 36 56 chrX 43873118 43873704 -118726226 - L1MCb LINE L1 -5469 576 3 426 322 27 0 chrX 43873738 43873884 -118726046 - HAL1 LINE L1 -2356 151 2 679 270 77 21 chrX 43873892 43874277 -118725653 - L1MEc LINE L1 -2302 3827 3408 288 0 0 0 chrX 43874279 43874311 -118725619 + (TA)n Simple_repeat Simple_repeat 2 33 0 2364 107 3 0 chrX 43874311 43874620 -118725310 - AluSx SINE Alu -2 310 1 589 232 91 93 chrX 43874627 43874766 -118725164 - L1MEc LINE L1 -2849 3280 3142 1720 128 32 32 chrX 43874766 43875048 -118724882 - AluSx SINE Alu -1 311 30 589 232 91 93 chrX 43875048 43875326 -118724604 - L1MEc LINE L1 -2987 3142 2864 783 294 144 23 chrX 43875702 43876175 -118723755 - L1MEc LINE L1 -4579 1731 1202 482 390 19 24 chrX 43876411 43876824 -118723106 - L1MEc LINE L1 -5256 863 453 368 323 63 71 chrX 43876973 43877338 -118722592 - L1MEc LINE L1 -5756 363 2 279 111 0 0 chrX 43877476 43877521 -118722409 - L1MA4A LINE L1 0 6303 6259 238 284 114 69 chrX 43877844 43878150 -118721780 - L1MEd LINE L1 -5335 784 465 270 308 65 79 chrX 43878230 43878522 -118721408 - L1MEd LINE L1 -5783 336 49 1135 141 0 47 chrX 43879036 43879228 -118720702 + MER5A DNA MER1_type 1 183 -6 835 145 61 0 chrX 43879477 43879608 -118720322 + FRAM SINE Alu 1 40 0 430 94 62 0 chrX 43879709 43879773 -118720157 + MER51D LTR ERV1 500 567 -90 462 238 8 16 chrX 43879790 43879916 -118720014 + L1ME3A LINE L1 5852 5976 -194 671 148 82 15 chrX 43879927 43880062 -118719868 + L1ME3A LINE L1 6027 6170 0 2409 81 0 19 chrX 43880640 43880950 -118718980 + AluSx SINE Alu 1 304 -8 1589 229 76 39 chrX 43881672 43882207 -118717723 + L1MC4 LINE L1 7505 8042 0 288 280 48 56 chrX 43882522 43882647 -118717283 - L2 LINE L2 0 3313 3190 477 256 45 34 chrX 43883440 43883616 -118716314 - MIR SINE MIR -6 256 79 249 33 0 0 chrX 43883616 43883646 -118716284 + (T)n Simple_repeat Simple_repeat 1 30 0 249 228 0 0 chrX 43886012 43886091 -118713839 + (CTGGGG)n Simple_repeat Simple_repeat 1 79 0 294 236 0 0 chrX 43886368 43886491 -118713439 + C-rich Low_complexity Low_complexity 5 127 0 508 283 11 44 chrX 43886738 43886918 -118713012 - MER5A DNA MER1_type 0 189 16 180 0 0 0 chrX 43888299 43888319 -118711611 + (CTG)n Simple_repeat Simple_repeat 2 21 0 261 261 43 0 chrX 43888541 43888610 -118711320 - L2 LINE L2 -3 3310 3239 3611 216 50 17 chrX 43889110 43890040 -118709890 - Charlie2 DNA MER1_type -27 2835 1876 983 194 36 60 chrX 43890070 43890322 -118709608 - Charlie2 DNA MER1_type -2541 321 76 24 32 0 0 chrX 43890366 43890397 -118709533 + AT_rich Low_complexity Low_complexity 1 31 0 1882 124 2 146 chrX 43890573 43890836 -118709094 + MER2 DNA MER2_type 1 188 -157 1925 104 58 84 chrX 43890836 43891182 -118708748 - MER1B DNA MER1_type 0 337 1 1882 124 2 146 chrX 43891182 43891321 -118708609 + MER2 DNA MER2_type 188 345 0 317 248 9 28 chrX 43891366 43891475 -118708455 + L1MC5 LINE L1 4561 4667 -1479 232 258 16 129 chrX 43891580 43891623 -118708307 + MLT1J LTR MaLR 400 446 -65 392 228 78 106 chrX 43891623 43891803 -118708127 + MER104 DNA MER2_type 2 176 -4 232 258 16 129 chrX 43891803 43891883 -118708047 + MLT1J LTR MaLR 446 509 -2 422 317 85 20 chrX 43891887 43892086 -118707844 + L2 LINE L2 2750 2961 -353 246 274 253 0 chrX 43892196 43892291 -118707639 + L2 LINE L2 3195 3313 0 255 250 11 23 chrX 43892309 43892397 -118707533 - L1M LINE L1 -766 5404 5318 559 217 20 5 chrX 43892468 43892598 -118707332 - MIR SINE MIR -62 146 70 548 316 0 68 chrX 43892790 43893056 -118706874 - L2 LINE L2 -366 2948 2701 617 168 168 7 chrX 43893084 43893227 -118706703 - MIR SINE MIR 0 262 97 1677 242 120 70 chrX 43894377 43895874 -118704056 + L1MC5 LINE L1 5543 7223 -738 1161 164 26 62 chrX 43895874 43896100 -118703830 - MER20 DNA MER1_type 0 219 2 1677 242 120 70 chrX 43896100 43896830 -118703100 + L1MC5 LINE L1 7223 7915 -46 9855 176 108 45 chrX 43896848 43898129 -118701801 + L1MDa LINE L1 5 1203 -5337 1779 129 56 31 chrX 43898129 43898415 -118701515 - AluSx SINE Alu -19 293 1 9855 176 108 45 chrX 43898415 43899073 -118700857 + L1MDa LINE L1 1203 1818 -4722 2090 130 23 0 chrX 43899073 43899372 -118700558 + AluSx SINE Alu 1 306 -6 9855 176 108 45 chrX 43899372 43899809 -118700121 + L1MDa LINE L1 1818 2533 -4007 1163 97 32 75 chrX 43899824 43900010 -118699920 + FRAM SINE Alu 1 171 -5 1942 167 229 15 chrX 43900012 43900467 -118699463 + L1MD2 LINE L1 5730 6281 -78 1412 188 110 55 chrX 43900740 43901086 -118698844 - MLT1A1 LTR MaLR 0 365 1 26 0 0 0 chrX 43901392 43901418 -118698512 + AT_rich Low_complexity Low_complexity 1 26 0 198 150 0 0 chrX 43901981 43902021 -118697909 + (TAG)n Simple_repeat Simple_repeat 1 40 0 872 182 19 0 chrX 43902244 43902398 -118697532 - FRAM SINE Alu -20 156 1 323 296 114 0 chrX 43902520 43902652 -118697278 + L2 LINE L2 562 708 -2606 366 306 88 38 chrX 43902907 43903195 -118696735 - L2 LINE L2 -191 3081 2775 203 175 0 0 chrX 43903924 43903964 -118695966 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2504 203 65 25 chrX 43905473 43906031 -118693899 + L1ME1 LINE L1 5582 6161 -5 666 272 95 29 chrX 43907440 43907683 -118692247 + MIR SINE MIR 2 260 -2 5336 31 1 17 chrX 43907724 43908445 -118691485 + L1PA4 LINE L1 5462 6167 0 804 81 0 0 chrX 43908458 43908557 -118691373 + AluS SINE Alu 1 99 -213 2141 175 115 5 chrX 43908758 43909175 -118690755 - MLT1C LTR MaLR -4 463 1 1920 133 4 0 chrX 43910106 43910384 -118689546 + AluJb SINE Alu 12 290 -22 279 79 0 0 chrX 43910384 43910422 -118689508 + (GA)n Simple_repeat Simple_repeat 1 38 0 1875 243 61 22 chrX 43910498 43910943 -118688987 + LTR16B LTR ERVL 1 462 -2 3743 316 35 6 chrX 43911187 43912449 -118687481 + HERV16 LTR ERVL 266 1564 -3432 1111 227 26 72 chrX 43912488 43912873 -118687057 + L1MD2 LINE L1 5970 6342 -17 713 229 7 0 chrX 43913000 43913153 -118686777 + HsTC2 DNA Tc2 360 513 -1385 * 1929 174 36 77 chrX 43913129 43913623 -118686307 + HsTC2 DNA Tc2 1251 1900 0 28 0 0 0 chrX 43915045 43915073 -118684857 + AT_rich Low_complexity Low_complexity 1 28 0 5479 124 40 9 chrX 43915174 43916148 -118683782 - L1MB1 LINE L1 0 6168 5160 377 232 35 78 chrX 43917173 43917315 -118682615 + LTR67 LTR ERVL 422 557 0 1164 185 26 9 chrX 43917449 43917676 -118682254 + MSTB2 LTR MaLR 1 231 -226 2242 150 19 14 chrX 43918118 43918478 -118681452 + MLT1A1 LTR MaLR 4 365 0 186 43 0 0 chrX 43920180 43920203 -118679727 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 977 185 72 26 chrX 43920230 43920425 -118679505 - MER63A DNA MER1_type -6 204 1 384 282 123 36 chrX 43920789 43921009 -118678921 - MIR SINE MIR -11 251 13 237 301 77 58 chrX 43921604 43921760 -118678170 - MIR SINE MIR -75 187 29 555 21 65 0 chrX 43922605 43922698 -118677232 + GA-rich Low_complexity Low_complexity 2 100 0 224 191 34 79 chrX 43923257 43923346 -118676584 + L2 LINE L2 3179 3263 -50 226 233 33 0 chrX 43923441 43923501 -118676429 - MIR SINE MIR -127 135 74 1990 218 92 23 chrX 43923798 43923880 -118676050 + MER68 LTR ERV1 1 76 -486 2693 201 105 11 chrX 43923880 43924452 -118675478 + MLT1E2 LTR MaLR 1 626 0 1990 218 92 23 chrX 43924452 43924891 -118675039 + MER68 LTR ERV1 76 558 -4 2134 123 13 0 chrX 43925374 43925675 -118674255 + AluSx SINE Alu 1 305 -7 190 280 0 120 chrX 43925971 43926071 -118673859 - L2 LINE L2 -34 3238 3151 1003 194 0 6 chrX 43926138 43926298 -118673632 - FRAM SINE Alu -7 159 1 627 129 0 11 chrX 43926523 43926616 -118673314 + AluYb8 SINE Alu 214 305 -13 519 302 124 47 chrX 43926653 43927040 -118672890 + LTR67 LTR ERVL 134 550 -7 306 0 0 0 chrX 43927057 43927091 -118672839 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 668 151 119 0 chrX 43927461 43927587 -118672343 - MIR SINE MIR -10 252 112 209 194 71 31 chrX 43927589 43927687 -118672243 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 352 241 61 81 chrX 43927713 43927974 -118671956 - L1ME4a LINE L1 -11 6110 5855 425 238 221 8 chrX 43930181 43930416 -118669514 - L1M4 LINE L1 -3644 2502 2218 1714 240 156 23 chrX 43930433 43931439 -118668491 + L1ME4a LINE L1 2823 4003 -2143 831 161 58 0 chrX 43931465 43931499 -118668431 - MER46A DNA MER2_type -60 176 135 288 214 222 26 chrX 43931499 43931616 -118668314 + MER46A DNA MER2_type 3 142 -94 905 267 108 15 chrX 43931652 43932060 -118667870 + L1ME4a LINE L1 4040 4485 -1661 395 195 12 24 chrX 43932712 43932794 -118667136 - MER94 DNA DNA -46 88 8 415 291 137 0 chrX 43933726 43933843 -118666087 + L2 LINE L2 3122 3254 -18 1805 219 75 29 chrX 43933870 43934387 -118665543 + L1MC4 LINE L1 7502 8042 0 2128 132 0 0 chrX 43937141 43937436 -118662494 + AluJo SINE Alu 1 295 -17 343 286 107 52 chrX 43937437 43937496 -118662434 + L1ME4a LINE L1 5615 5669 -452 3164 132 2 16 chrX 43937496 43937987 -118661943 + MER31A LTR ERV1 1 484 -1 343 286 107 52 chrX 43937987 43938217 -118661713 + L1ME4a LINE L1 5669 5920 -201 22 35 0 0 chrX 43940121 43940150 -118659780 + AT_rich Low_complexity Low_complexity 1 29 0 2845 210 50 48 chrX 43940704 43942027 -118657903 - L1M4 LINE L1 -1277 4869 3409 502 188 164 36 chrX 43942012 43942177 -118657753 - L1M4 LINE L1 -3516 2630 2445 * 3958 216 37 37 chrX 43942190 43942832 -118657098 + L1MC/D LINE L1 3710 4351 -1795 1800 163 0 11 chrX 43942832 43943115 -118656815 + AluSx SINE Alu 1 280 -32 3356 37 3 0 chrX 43943115 43943494 -118656436 + L1PA4 LINE L1 5774 6153 -2 3958 216 37 37 chrX 43943494 43943878 -118656052 + L1MC/D LINE L1 4349 4737 -1409 1468 173 20 0 chrX 43943871 43944120 -118655810 - L1MD3 LINE L1 -340 7655 7402 * 781 172 0 0 chrX 43944121 43944243 -118655687 - MLT1F1 LTR MaLR -445 122 1 2104 231 45 21 chrX 43944244 43944776 -118655154 - L1MD3 LINE L1 -718 7277 6733 1421 231 95 24 chrX 43944781 43945232 -118654698 + L1MC/D LINE L1 4725 5207 -939 1301 154 81 0 chrX 43945236 43945470 -118654460 + L1MD3 LINE L1 7730 7982 -13 2247 136 3 23 chrX 43945616 43945962 -118653968 - MER1B DNA MER1_type 0 339 1 1422 247 31 0 chrX 43946385 43946809 -118653121 + L1MC/D LINE L1 5191 5625 -734 629 286 65 60 chrX 43946824 43946896 -118653034 + L1MCc LINE L1 44 114 -6308 1645 106 171 33 chrX 43946896 43947171 -118652759 - AluSq SINE Alu 0 313 1 629 286 65 60 chrX 43947171 43947486 -118652444 + L1MCc LINE L1 114 777 -5645 713 316 18 43 chrX 43947782 43948195 -118651735 - L1MCb LINE L1 -5681 364 27 * 1461 212 53 96 chrX 43948179 43948471 -118651459 - L1MDa LINE L1 -3860 2680 2422 1798 153 108 13 chrX 43948471 43948785 -118651145 + MER2 DNA MER2_type 1 344 0 1461 212 53 96 chrX 43948785 43949115 -118650815 - L1MDa LINE L1 -4118 2422 2079 2149 69 55 0 chrX 43949466 43949774 -118650156 - AluY SINE Alu 0 323 1 4239 34 0 0 chrX 43950525 43951024 -118648906 - L1PA3 LINE L1 -1002 5144 4646 8338 16 1 0 chrX 43951024 43952029 -118647901 + L1PA3 LINE L1 5150 6155 0 1793 135 40 4 chrX 43952549 43952876 -118647054 - AluJo SINE Alu 0 337 1 3396 144 31 13 chrX 43954188 43954743 -118645187 + MER34B LTR ERV1 1 565 0 457 88 81 6 chrX 43954804 43954964 -118644966 + (TA)n Simple_repeat Simple_repeat 1 172 0 39 50 0 0 chrX 43954964 43955024 -118644906 + AT_rich Low_complexity Low_complexity 1 60 0 940 182 168 10 chrX 43955769 43955972 -118643958 + MER21B LTR ERV1 12 246 -617 765 40 0 10 chrX 43955978 43956078 -118643852 + L1PA15 LINE L1 5369 5467 -698 319 89 81 8 chrX 43956091 43956214 -118643716 + (TTATA)n Simple_repeat Simple_repeat 1 132 0 375 186 0 82 chrX 43956238 43956432 -118643498 + (TTTA)n Simple_repeat Simple_repeat 2 179 0 363 193 29 35 chrX 43956355 43956591 -118643339 + (TTATA)n Simple_repeat Simple_repeat 1 234 0 * 433 154 33 55 chrX 43956603 43956844 -118643086 + (TTAA)n Simple_repeat Simple_repeat 1 235 0 5198 99 12 0 chrX 43956864 43957548 -118642382 + L1PA15 LINE L1 5470 6161 -4 2260 120 0 0 chrX 43957587 43957887 -118642043 + AluSx SINE Alu 1 300 -12 2480 210 68 8 chrX 43957976 43958509 -118641421 + MER21B LTR ERV1 288 852 -11 265 235 106 12 chrX 43961945 43962030 -118637900 + L2 LINE L2 3205 3297 -16 22 0 0 0 chrX 43962051 43962073 -118637857 + AT_rich Low_complexity Low_complexity 1 22 0 2062 108 3 7 chrX 43962073 43962396 -118637534 - AluSx SINE Alu 0 324 3 991 239 90 4 chrX 43962503 43962758 -118637172 + LTR16A LTR ERVL 2 278 -172 3735 247 67 20 chrX 43962815 43964254 -118635676 - L1MEc LINE L1 -2756 3459 1993 357 256 0 0 chrX 43964250 43964340 -118635590 - L1M4c LINE L1 -3029 3353 3264 * 1882 259 70 1 chrX 43964345 43964366 -118635564 - L1M4c LINE L1 -3044 3338 3320 2657 39 0 16 chrX 43964366 43964678 -118635252 - AluY SINE Alu -4 307 1 1288 123 5 0 chrX 43964688 43964892 -118635038 - L1MA8 LINE L1 -4 6287 6083 1882 259 70 1 chrX 43964892 43965428 -118634502 - L1M4c LINE L1 -3070 3312 2727 312 196 0 0 chrX 43965431 43965482 -118634448 - L1MEc LINE L1 -6311 85 35 * 2573 232 134 49 chrX 43965481 43966314 -118633616 - L1M4c LINE L1 -4249 2133 1373 188 33 0 33 chrX 43966314 43966344 -118633586 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2057 100 4 4 chrX 43966350 43966621 -118633309 - AluSg SINE Alu -37 273 3 2573 232 134 49 chrX 43966621 43966923 -118633007 - L1M4c LINE L1 -5013 1369 795 310 250 0 0 chrX 43966944 43967024 -118632906 - L1MA9 LINE L1 -38 6274 6195 * 503 286 77 93 chrX 43967020 43967624 -118632306 - L1MDa LINE L1 -5434 1096 57 2259 103 0 20 chrX 43971035 43971336 -118628594 - AluSg SINE Alu -15 295 1 2462 100 42 31 chrX 43975144 43975504 -118624426 + THE1B LTR MaLR 1 364 0 326 224 0 26 chrX 43978347 43978423 -118621507 + L2 LINE L2 3197 3270 -2 232 304 51 0 chrX 43978425 43978504 -118621426 + L1ME LINE L1 5615 5697 -424 2915 84 38 5 chrX 43978638 43979030 -118620900 - L1PA8 LINE L1 0 6172 5768 3933 74 9 17 chrX 43979031 43979461 -118620469 + L1PA8A LINE L1 5058 5479 -652 2337 85 0 0 chrX 43979461 43979789 -118620141 + AluSq SINE Alu 1 328 0 3933 74 9 17 chrX 43979789 43980075 -118619855 + L1PA8A LINE L1 5479 5766 -365 1423 241 76 32 chrX 43980485 43980892 -118619038 - MER77 LTR ERV1 -6 599 175 551 252 52 19 chrX 43980971 43981126 -118618804 - MER77 LTR ERV1 -393 212 53 651 280 42 17 chrX 43981199 43981438 -118618492 - MIR SINE MIR -3 259 15 1242 265 46 33 chrX 43981773 43981895 -118618035 - L2 LINE L2 0 3313 3194 1139 210 33 9 chrX 43981895 43982081 -118617849 - MER58A DNA MER1_type -2197 223 30 2157 141 0 0 chrX 43982081 43982387 -118617543 + AluSx SINE Alu 1 306 -6 1139 210 33 9 chrX 43982387 43982414 -118617516 - MER58A DNA MER1_type -2390 30 5 1242 265 46 33 chrX 43982414 43982684 -118617246 - L2 LINE L2 -119 3194 2916 658 284 147 21 chrX 43982681 43982966 -118616964 + L2 LINE L2 2987 3307 -6 * 2028 138 92 14 chrX 43982991 43983339 -118616591 - THE1C LTR MaLR 0 375 1 2422 133 54 3 chrX 43983382 43983750 -118616180 + MSTC LTR MaLR 42 428 0 396 0 0 0 chrX 43984292 43984336 -118615594 + (CA)n Simple_repeat Simple_repeat 1 44 0 9585 35 0 0 chrX 43984457 43986354 -118613576 - L1PA3 LINE L1 0 6155 4302 8582 29 3 0 chrX 43986354 43987358 -118612572 + L1PA3 LINE L1 3323 4329 -1817 2266 100 10 0 chrX 43987358 43987658 -118612272 - AluY SINE Alu -8 303 1 532 299 40 17 chrX 43987999 43988173 -118611757 + MIR SINE MIR 85 262 0 2163 107 47 0 chrX 43988478 43988776 -118611154 - AluSx SINE Alu 0 312 1 379 243 27 0 chrX 43989132 43989206 -118610724 - MER5A DNA MER1_type -76 113 38 242 288 25 34 chrX 43989258 43989376 -118610554 + MER117 DNA MER1_type 79 195 -2 351 96 0 0 chrX 43989791 43989843 -118610087 + (GGA)n Simple_repeat Simple_repeat 3 54 0 2137 116 0 31 chrX 43989911 43990229 -118609701 + AluSx SINE Alu 1 308 -4 22130 119 26 11 chrX 43990240 43993698 -118606232 + L1MA2 LINE L1 14 3529 -4036 5781 132 20 4 chrX 43993683 43995121 -118604809 + L1MA2 LINE L1 5723 7181 -542 * 6590 82 12 40 chrX 43995121 43996302 -118603628 + L1PA10 LINE L1 4995 6150 -18 198 0 0 0 chrX 43996302 43996324 -118603606 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 3851 72 47 6 chrX 43996330 43996845 -118603085 + L1MA2 LINE L1 7188 7723 0 469 204 41 0 chrX 43997253 43997351 -118602579 - MIR SINE MIR -65 197 96 190 356 38 23 chrX 43997900 43998032 -118601898 + L2 LINE L2 2724 2857 -457 315 270 108 0 chrX 43998117 43998228 -118601702 - MIR3 SINE MIR -15 193 71 233 274 206 0 chrX 43998843 43998916 -118601014 - MIR3 SINE MIR -6 202 115 1998 152 0 31 chrX 43999001 43999323 -118600607 - AluJo SINE Alu 0 312 1 657 299 97 30 chrX 43999734 44000095 -118599835 - MARNA DNA Mariner -54 532 148 486 292 56 40 chrX 44000184 44000434 -118599496 + MIR SINE MIR 7 260 -2 204 211 0 0 chrX 44000636 44000674 -118599256 + CT-rich Low_complexity Low_complexity 1 38 0 393 277 142 26 chrX 44000900 44001055 -118598875 - MIR SINE MIR -8 254 82 261 364 16 16 chrX 44001564 44001685 -118598245 + MIR SINE MIR 17 137 -125 1545 164 71 11 chrX 44002020 44002289 -118597641 + AluJb SINE Alu 3 287 -25 2210 103 0 26 chrX 44002298 44002610 -118597320 + AluSg SINE Alu 1 304 -6 253 277 40 20 chrX 44003001 44003102 -118596828 + MIR3 SINE MIR 105 207 -1 639 201 17 0 chrX 44003539 44003713 -118596217 + GA-rich Low_complexity Low_complexity 1 177 0 1135 181 144 25 chrX 44003964 44004241 -118595689 + L1MD3 LINE L1 7577 7886 -109 205 279 67 77 chrX 44004275 44004379 -118595551 - L3 LINE CR1 -1430 147 45 526 167 13 0 chrX 44004526 44004604 -118595326 + AluJ/FLAM SINE Alu 2 80 -232 742 264 36 36 chrX 44005091 44005353 -118594577 + MIR SINE MIR 3 262 0 1736 134 46 11 chrX 44005364 44005647 -118594283 + L1MB7 LINE L1 5876 6168 -16 490 230 48 0 chrX 44005755 44005881 -118594049 + MIR SINE MIR 131 262 0 558 287 24 30 chrX 44006008 44006172 -118593758 + MIR SINE MIR 5 167 -95 2419 115 131 11 chrX 44006212 44006594 -118593336 + MSTA LTR MaLR 1 428 0 240 330 0 27 chrX 44006644 44006756 -118593174 + A-rich Low_complexity Low_complexity 3 111 0 1759 139 77 0 chrX 44006998 44007271 -118592659 - AluSp SINE Alu -19 294 1 1103 68 0 0 chrX 44007276 44007408 -118592522 - AluSq/x SINE Alu -180 133 2 1962 161 0 7 chrX 44007467 44007771 -118592159 - AluJo SINE Alu -8 304 3 261 0 0 0 chrX 44008683 44008712 -118591218 + (A)n Simple_repeat Simple_repeat 1 29 0 225 146 0 0 chrX 44009243 44009291 -118590639 + (GA)n Simple_repeat Simple_repeat 2 49 0 596 213 75 25 chrX 44009523 44009683 -118590247 + MLT1B LTR MaLR 4 171 -219 294 216 0 0 chrX 44009707 44009781 -118590149 + T-rich Low_complexity Low_complexity 1 74 0 1067 203 10 0 chrX 44009784 44009981 -118589949 + MLT1B LTR MaLR 192 390 0 2353 152 44 26 chrX 44010353 44010742 -118589188 - MSTD LTR MaLR 0 396 1 1894 206 48 28 chrX 44012241 44012698 -118587232 - MLT1C LTR MaLR -1 466 1 217 317 83 21 chrX 44012932 44013077 -118586853 - MIR SINE MIR -88 174 21 1420 175 73 94 chrX 44013428 44013662 -118586268 - MLT1A2 LTR MaLR 0 374 150 1536 139 31 4 chrX 44013662 44013921 -118586009 - L1MA4 LINE L1 -6 6294 6029 1420 175 73 94 chrX 44013921 44014068 -118585862 - MLT1A2 LTR MaLR -224 150 1 201 314 23 23 chrX 44014124 44014210 -118585720 + MIR SINE MIR 79 164 -98 225 279 13 0 chrX 44014580 44014659 -118585271 + L3b LINE CR1 1311 1390 -193 6066 58 19 26 chrX 44014667 44015438 -118584492 + MER4E LTR ERV1 1 766 0 296 403 16 0 chrX 44015783 44015912 -118584018 - MIR SINE MIR -130 132 2 409 350 52 38 chrX 44015993 44016284 -118583646 + L2 LINE L2 2464 2758 -556 1859 192 28 11 chrX 44016291 44016650 -118583280 + MLT1A1 LTR MaLR 1 365 0 301 243 74 128 chrX 44016688 44016984 -118582946 + L2 LINE L2 2933 3212 -60 15158 147 24 48 chrX 44018419 44018579 -118581351 - L1MA5 LINE L1 -3 6297 6135 2329 103 0 3 chrX 44018579 44018889 -118581041 + AluSg SINE Alu 2 310 0 15158 147 24 48 chrX 44018889 44020569 -118579361 - L1MA5 LINE L1 -165 6135 4416 297 0 0 0 chrX 44020569 44020602 -118579328 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 15158 147 24 48 chrX 44020602 44022498 -118577432 - L1MA5 LINE L1 -1884 4416 2676 2210 129 3 0 chrX 44022498 44022809 -118577121 + AluSx SINE Alu 1 312 0 15158 147 24 48 chrX 44022809 44023187 -118576743 - L1MA5 LINE L1 -3624 2676 2290 1907 141 0 0 chrX 44023969 44024295 -118575635 + AluJb SINE Alu 1 326 0 265 276 218 0 chrX 44024456 44024543 -118575387 - MER91C DNA MER1_type -32 108 3 3115 159 26 110 chrX 44025297 44025951 -118573979 + MER77 LTR ERV1 3 601 -4 364 303 33 35 chrX 44026978 44027145 -118572785 - MIR SINE MIR -67 141 18 240 290 14 14 chrX 44027365 44027434 -118572496 + L2 LINE L2 3183 3251 -21 291 290 176 23 chrX 44027570 44027701 -118572229 + MIR SINE MIR 92 242 -20 249 273 38 91 chrX 44029058 44029190 -118570740 - MIR SINE MIR -112 150 26 2123 151 0 0 chrX 44029796 44030108 -118569822 + AluSx SINE Alu 1 312 0 2628 139 148 17 chrX 44031282 44031665 -118568265 - MLT2B1 LTR ERVL 0 520 66 1297 176 120 50 chrX 44031665 44032006 -118567924 - MLT1A1 LTR MaLR 0 365 1 2628 139 148 17 chrX 44032006 44032082 -118567848 - MLT2B1 LTR ERVL -454 66 1 2013 144 0 22 chrX 44032418 44032737 -118567193 - AluJb SINE Alu 0 312 1 1277 185 14 149 chrX 44033159 44033530 -118566400 - MLT1A1 LTR MaLR 0 365 56 2310 102 0 0 chrX 44033530 44033825 -118566105 + AluSc SINE Alu 3 297 -12 1277 185 14 149 chrX 44033825 44033875 -118566055 - MLT1A1 LTR MaLR -309 56 1 2668 270 31 71 chrX 44034346 44035332 -118564598 + L1M4b LINE L1 11 1202 -5657 1411 181 17 148 chrX 44035527 44035565 -118564365 - MLT1A1 LTR MaLR 0 365 324 2067 147 0 0 chrX 44035565 44035865 -118564065 + AluSx SINE Alu 1 300 -12 1411 181 17 148 chrX 44035865 44036246 -118563684 - MLT1A1 LTR MaLR -41 324 1 1654 197 33 76 chrX 44036358 44036636 -118563294 + L1M4b LINE L1 1206 1456 -5403 1828 175 0 14 chrX 44036636 44036933 -118562997 + AluJo SINE Alu 1 293 -19 1654 197 33 76 chrX 44036933 44037141 -118562789 + L1M4b LINE L1 1456 1671 -5188 3021 179 2 0 chrX 44037156 44037691 -118562239 + L1 LINE L1 3682 4217 -1929 7064 162 153 35 chrX 44037691 44039222 -118560708 - MER52A LTR ERV1 0 1755 45 202 283 17 0 chrX 44039544 44039604 -118560326 + (CCA)n Simple_repeat Simple_repeat 3 63 0 299 175 16 0 chrX 44039656 44039719 -118560211 + L1 LINE L1 4214 4277 -1869 384 219 95 19 chrX 44039724 44039829 -118560101 + MER67A LTR ERV1 431 543 0 2505 160 52 27 chrX 44040070 44040513 -118559417 - MSTB2 LTR MaLR 0 457 4 1223 201 44 103 chrX 44041053 44041543 -118558387 - LTR34 LTR ERV1 -4 695 136 4829 116 31 25 chrX 44041604 44042121 -118557809 + LTR8 LTR ERV1 1 524 -167 2342 111 0 0 chrX 44042121 44042427 -118557503 + AluSx SINE Alu 1 306 -6 4829 116 31 25 chrX 44042427 44042596 -118557334 + LTR8 LTR ERV1 524 691 0 404 164 25 115 chrX 44042621 44042656 -118557274 - MER4C LTR ERV1 -349 116 79 1860 118 0 49 chrX 44042656 44042943 -118556987 + AluSx SINE Alu 1 273 -39 404 164 25 115 chrX 44042943 44043029 -118556901 - MER4C LTR ERV1 -386 79 6 789 260 60 44 chrX 44043132 44043451 -118556479 - LTR33 LTR ERVL -58 463 140 1254 262 99 52 chrX 44043511 44043805 -118556125 + MLT1F1 LTR MaLR 3 282 -285 900 185 135 126 chrX 44043805 44044361 -118555569 - MER34B LTR ERV1 0 565 5 1254 262 99 52 chrX 44044361 44044541 -118555389 + MLT1F1 LTR MaLR 282 507 -60 5842 75 1 0 chrX 44044541 44045231 -118554699 - LTR8 LTR ERV1 0 691 1 1254 262 99 52 chrX 44045231 44045290 -118554640 + MLT1F1 LTR MaLR 507 562 -5 250 309 73 32 chrX 44045284 44045407 -118554523 - LTR33 LTR ERVL -393 128 1 * 2795 92 23 5 chrX 44045432 44045822 -118554108 + MER4E LTR ERV1 1 397 -382 195 114 0 0 chrX 44046186 44046221 -118553709 + (TA)n Simple_repeat Simple_repeat 1 35 0 2410 170 43 47 chrX 44046293 44046780 -118553150 - MER31A LTR ERV1 0 485 1 306 259 129 0 chrX 44046924 44047009 -118552921 + L2 LINE L2 3152 3247 -25 1309 104 21 10 chrX 44047027 44047219 -118552711 + L1M1 LINE L1 15 208 -7357 2635 118 100 5 chrX 44047237 44047628 -118552302 + MSTA LTR MaLR 1 428 0 5960 109 27 11 chrX 44047645 44048648 -118551282 - L1PB2 LINE L1 -1 6150 5126 * 7497 194 44 71 chrX 44048644 44050397 -118549533 + L1M1 LINE L1 730 2417 -5148 1875 150 3 19 chrX 44050397 44050711 -118549219 + AluSq SINE Alu 1 309 -4 7497 194 44 71 chrX 44050711 44051057 -118548873 + L1M1 LINE L1 2417 2771 -4794 3463 176 36 5 chrX 44051056 44051799 -118548131 + L1M1 LINE L1 4226 4991 -2574 * 936 97 8 0 chrX 44051799 44051923 -118548007 + AluY SINE Alu 1 125 -186 469 209 183 20 chrX 44051930 44052083 -118547847 - MER39 LTR ERV1 -526 181 4 1574 175 132 9 chrX 44052178 44052504 -118547426 - MER31B LTR ERV1 0 466 101 376 214 12 32 chrX 44052502 44052619 -118547311 + MER34C LTR ERV1 7 111 -474 * 192 77 0 0 chrX 44052620 44052646 -118547284 + (A)n Simple_repeat Simple_repeat 1 26 0 712 189 49 70 chrX 44052763 44053057 -118546873 + MER34B LTR ERV1 392 565 0 459 196 52 0 chrX 44053057 44053154 -118546776 - MER31B LTR ERV1 -364 102 1 33 43 0 0 chrX 44053430 44053477 -118546453 + AT_rich Low_complexity Low_complexity 1 47 0 930 243 176 52 chrX 44053544 44053964 -118545966 - LTR29 LTR ERV1 -150 472 1 504 148 0 0 chrX 44054104 44054185 -118545745 - AluSp/q SINE Alu -1 312 232 844 113 0 0 chrX 44054198 44054313 -118545617 - AluSg1 SINE Alu -194 115 1 768 134 42 0 chrX 44054314 44054433 -118545497 + MER41A LTR ERV1 431 554 0 250 193 53 0 chrX 44054433 44054487 -118545443 - LTR48 LTR ERV1 -657 130 74 476 124 38 19 chrX 44054519 44054624 -118545306 + LTR37A LTR ERV1 320 426 0 3529 114 9 17 chrX 44055580 44056072 -118543858 + MER34C LTR ERV1 62 551 -34 4350 136 31 50 chrX 44056072 44056866 -118543064 + MER4E LTR ERV1 1 779 0 3529 114 9 17 chrX 44056866 44056901 -118543029 + MER34C LTR ERV1 551 585 0 995 227 0 0 chrX 44057438 44057623 -118542307 + MER5A DNA MER1_type 1 185 -4 279 246 88 26 chrX 44058415 44058529 -118541401 + MER57-int LTR ERV1 5682 5802 -1735 610 12 37 0 chrX 44058534 44058616 -118541314 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 1361 154 75 4 chrX 44059139 44059474 -118540456 + AluJo SINE Alu 40 390 0 329 261 97 22 chrX 44061525 44061659 -118538271 + MIR SINE MIR 89 232 -30 195 262 49 49 chrX 44061810 44061871 -118538059 + L3 LINE CR1 150 210 -1367 1566 77 91 0 chrX 44062105 44062313 -118537617 - MER30 DNA MER1_type 0 230 4 531 207 110 18 chrX 44062330 44062494 -118537436 + MIR SINE MIR 84 262 0 630 193 9 0 chrX 44064345 44064454 -118535476 + Tigger3(Golem) DNA MER2_type 1 110 -2919 347 190 0 0 chrX 44064459 44064517 -118535413 + Tigger3(Golem) DNA MER2_type 85 142 -2887 * 1589 73 0 10 chrX 44064514 44064720 -118535210 + Tigger3(Golem) DNA MER2_type 2781 2984 -45 1205 62 0 0 chrX 44064728 44064872 -118535058 + AluSg/x SINE Alu 158 301 -11 1720 116 160 25 chrX 44064872 44065191 -118534739 - MSTA LTR MaLR -66 362 1 405 145 0 26 chrX 44065247 44065323 -118534607 + MER53 DNA DNA 115 188 -1 1739 161 139 3 chrX 44065327 44065657 -118534273 - MER89 LTR ERV1 0 559 185 3804 156 17 3 chrX 44065720 44066473 -118533457 + L1MB7 LINE L1 5323 6137 -29 317 247 21 145 chrX 44067129 44067255 -118532675 - MER5B DNA MER1_type -6 172 74 1985 129 3 14 chrX 44067255 44067430 -118532500 - AluSx SINE Alu 0 308 136 2388 92 0 0 chrX 44067430 44067734 -118532196 - AluY SINE Alu -7 304 1 1985 129 3 14 chrX 44067734 44067869 -118532061 - AluSx SINE Alu -172 136 1 317 247 21 145 chrX 44067869 44067927 -118532003 - MER5B DNA MER1_type -104 74 10 1603 126 49 8 chrX 44067944 44068190 -118531740 + L1MC/D LINE L1 5450 5705 -628 413 255 14 101 chrX 44068176 44068297 -118531633 - L1MDb LINE L1 -5308 1101 1004 * 2265 107 0 0 chrX 44068297 44068588 -118531342 - AluSg1 SINE Alu -18 291 1 413 255 14 101 chrX 44068588 44068674 -118531256 - L1MDb LINE L1 -5405 1004 912 1575 181 20 23 chrX 44068681 44068984 -118530946 - AluJo SINE Alu -10 302 1 1097 229 71 34 chrX 44068993 44069205 -118530725 - L1MDa LINE L1 -5109 1431 1228 2174 107 7 3 chrX 44069205 44069495 -118530435 - AluSx SINE Alu -21 291 1 1097 229 71 34 chrX 44069495 44069689 -118530241 - L1MDa LINE L1 -5312 1228 1010 913 129 34 0 chrX 44070858 44071005 -118528925 + AluJb SINE Alu 140 291 -21 450 0 0 0 chrX 44071956 44072006 -118527924 + (TG)n Simple_repeat Simple_repeat 2 51 0 188 352 56 0 chrX 44072141 44072212 -118527718 - MIR SINE MIR -116 146 72 672 102 11 0 chrX 44073132 44073249 -118526681 + FLAM_A SINE Alu 25 142 0 424 91 0 39 chrX 44073321 44073398 -118526532 + L1MB2 LINE L1 6098 6171 0 588 196 12 168 chrX 44073448 44073852 -118526078 - L1MC4 LINE L1 0 8042 7702 2046 124 0 31 chrX 44073852 44074174 -118525756 - AluSx SINE Alu 0 312 1 246 290 0 0 chrX 44074177 44074246 -118525684 - L1MC4 LINE L1 -467 7575 7507 1863 160 7 0 chrX 44074836 44075130 -118524800 - AluSx SINE Alu -15 297 2 914 144 8 0 chrX 44075154 44075286 -118524644 - AluSq/x SINE Alu -179 133 1 737 229 18 13 chrX 44075311 44075498 -118524432 - L1MC4 LINE L1 -207 7678 7416 318 148 0 0 chrX 44075873 44075927 -118524003 + (TA)n Simple_repeat Simple_repeat 1 54 0 274 233 47 0 chrX 44075930 44076016 -118523914 + L1MC4 LINE L1 6614 6703 -1339 1011 161 0 0 chrX 44076025 44076205 -118523725 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chrX 44076205 44076232 -118523698 + (T)n Simple_repeat Simple_repeat 1 27 0 2081 135 0 0 chrX 44076431 44076720 -118523210 - AluSx SINE Alu -23 289 1 228 322 82 7 chrX 44077011 44077157 -118522773 + MIR3 SINE MIR 52 208 0 991 183 0 59 chrX 44077385 44077587 -118522343 - AluJb SINE Alu -38 274 85 672 308 59 7 chrX 44078290 44078579 -118521351 - L1M4 LINE L1 -1658 4488 4185 979 106 0 0 chrX 44078597 44078729 -118521201 - AluJb SINE Alu -180 132 1 605 293 108 3 chrX 44078749 44079046 -118520884 - L1M4 LINE L1 -1978 4168 3841 1628 175 14 20 chrX 44079050 44079342 -118520588 - AluJb SINE Alu -9 303 14 2464 152 0 0 chrX 44079355 44079731 -118520199 - MER41D LTR ERV1 -181 376 1 865 231 20 43 chrX 44079731 44079854 -118520076 - L1MDa LINE L1 -4986 1554 1430 1531 189 10 23 chrX 44079854 44080160 -118519770 - AluJo SINE Alu -10 302 1 865 231 20 43 chrX 44080160 44080339 -118519591 - L1MDa LINE L1 -5110 1430 1259 4039 131 11 23 chrX 44080366 44081006 -118518924 + L1MC1 LINE L1 5696 6327 -6 23 68 0 0 chrX 44081006 44081050 -118518880 + AT_rich Low_complexity Low_complexity 1 44 0 853 222 29 54 chrX 44081060 44081218 -118518712 + L1MB7 LINE L1 2170 2320 -3826 2431 85 0 0 chrX 44081218 44081513 -118518417 + AluSg SINE Alu 1 295 -15 853 222 29 54 chrX 44081513 44081633 -118518297 + L1MB7 LINE L1 2320 2441 -3705 * 6032 196 38 25 chrX 44081618 44082568 -118517362 + L1MB7 LINE L1 3881 4864 -1378 660 187 49 24 chrX 44082568 44082691 -118517239 - FLAM_C SINE Alu -6 127 2 6032 196 38 25 chrX 44082691 44083417 -118516513 + L1MB7 LINE L1 4864 5579 -663 262 247 0 47 chrX 44083413 44083498 -118516432 + L1ME1 LINE L1 5992 6072 -94 * 192 40 0 0 chrX 44083507 44083532 -118516398 + (CA)n Simple_repeat Simple_repeat 2 26 0 7167 125 8 11 chrX 44083553 44085067 -118514863 + L1MA3 LINE L1 4796 6305 0 1425 194 96 97 chrX 44085371 44085912 -118514018 + MER66A LTR ERV1 97 474 -4 225 0 0 0 chrX 44086244 44086269 -118513661 + (A)n Simple_repeat Simple_repeat 1 25 0 2738 172 24 4 chrX 44086775 44087229 -118512701 + MER6 DNA MER2_type 5 467 -398 324 143 0 0 chrX 44088551 44088607 -118511323 + (GGGGA)n Simple_repeat Simple_repeat 1 56 0 381 321 75 36 chrX 44089033 44089285 -118510645 + MLT1K LTR MaLR 3 264 -324 299 286 11 22 chrX 44089318 44089409 -118510521 + MLT1K LTR MaLR 434 523 -65 220 291 101 0 chrX 44090996 44091075 -118508855 - L2 LINE L2 -2 3270 3184 248 290 0 14 chrX 44091354 44091423 -118508507 - MIR3 SINE MIR -41 167 100 2570 71 3 0 chrX 44092226 44092536 -118507394 + AluSp SINE Alu 2 312 -1 2322 85 14 3 chrX 44092550 44092845 -118507085 + AluSc SINE Alu 1 298 -11 1902 142 7 3 chrX 44093086 44093374 -118506556 + AluJb SINE Alu 1 289 -23 3074 167 31 0 chrX 44093563 44094103 -118505827 + L1MB7 LINE L1 5616 6172 -12 1058 116 33 128 chrX 44094149 44094219 -118505711 + MER20 DNA MER1_type 1 76 -143 762 176 0 22 chrX 44094219 44094355 -118505575 - FLAM_C SINE Alu 0 133 1 2369 101 0 3 chrX 44094365 44094671 -118505259 - AluSp SINE Alu -7 306 2 1058 116 33 128 chrX 44094671 44094831 -118505099 + MER20 DNA MER1_type 85 219 0 1616 198 16 3 chrX 44094874 44095182 -118504748 - AluJo SINE Alu 0 312 1 1443 198 87 57 chrX 44096106 44096510 -118503420 + LOR1b LTR ERV1 46 461 0 620 209 85 13 chrX 44096510 44096663 -118503267 + L1ME1 LINE L1 5839 6002 -164 830 180 0 12 chrX 44096686 44096847 -118503083 + L1MA10 LINE L1 6176 6334 0 1527 134 0 5 chrX 44096882 44097099 -118502831 + AluSq SINE Alu 1 216 -97 213 300 0 12 chrX 44097404 44097484 -118502446 + (CAG)n Simple_repeat Simple_repeat 1 79 0 26 0 0 0 chrX 44102107 44102133 -118497797 + AT_rich Low_complexity Low_complexity 1 26 0 2467 93 0 0 chrX 44102133 44102445 -118497485 + AluSx SINE Alu 1 312 0 307 189 103 16 chrX 44103882 44103998 -118495932 - MIR SINE MIR -66 142 66 182 65 65 0 chrX 44104150 44104181 -118495749 + CT-rich Low_complexity Low_complexity 2 34 0 2307 113 0 0 chrX 44104936 44105245 -118494685 + AluSq SINE Alu 3 311 -2 273 29 0 0 chrX 44105332 44105366 -118494564 + (TG)n Simple_repeat Simple_repeat 2 35 0 219 125 0 0 chrX 44105368 44105408 -118494522 + (GA)n Simple_repeat Simple_repeat 1 40 0 676 182 33 0 chrX 44105756 44105877 -118494053 + FRAM SINE Alu 22 146 -30 2030 133 0 13 chrX 44105906 44106207 -118493723 + AluSx SINE Alu 1 297 -15 2215 135 3 0 chrX 44106283 44106616 -118493314 + LTR64 LTR ERVK 1 334 -224 2143 111 69 14 chrX 44106609 44106713 -118493217 + LTR44 LTR ERV1 138 235 -284 * 2130 122 0 3 chrX 44106713 44107009 -118492921 + AluSx SINE Alu 1 295 -17 2143 111 69 14 chrX 44107009 44107266 -118492664 + LTR44 LTR ERV1 235 519 0 501 189 0 22 chrX 44107476 44107566 -118492364 + MER21B LTR ERV1 3 90 -773 1471 157 112 4 chrX 44107588 44107855 -118492075 + MER21B LTR ERV1 19 314 -549 1552 36 0 36 chrX 44107855 44108050 -118491880 + L1PA3 LINE L1 5968 6155 0 27 87 0 0 chrX 44108201 44108270 -118491660 + AT_rich Low_complexity Low_complexity 1 69 0 628 237 19 6 chrX 44108322 44108478 -118491452 + MIR SINE MIR 70 227 -35 542 272 15 41 chrX 44108538 44108733 -118491197 + MIR SINE MIR 40 229 -33 2512 147 54 7 chrX 44108843 44109252 -118490678 - MSTC LTR MaLR 0 428 1 453 210 10 10 chrX 44109354 44109454 -118490476 - L2 LINE L2 0 3313 3214 736 243 131 82 chrX 44109464 44110621 -118489309 + MER52A-int LTR ERV1 45 1444 -4502 1816 160 3 7 chrX 44110952 44111246 -118488684 + AluJb SINE Alu 1 293 -19 1015 23 15 0 chrX 44111246 44111376 -118488554 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 2236 188 65 105 chrX 44111489 44112024 -118487906 + MER52A-int LTR ERV1 834 1389 -3547 1528 161 92 4 chrX 44112024 44112313 -118487617 + AluJb SINE Alu 1 312 0 2236 188 65 105 chrX 44112313 44112505 -118487425 + MER52A-int LTR ERV1 1389 1423 -3513 1612 142 4 0 chrX 44112505 44112758 -118487172 + AluJb SINE Alu 51 304 0 2236 188 65 105 chrX 44112758 44113012 -118486918 + MER52A-int LTR ERV1 1423 1686 -3250 180 0 0 0 chrX 44113033 44113053 -118486877 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2209 97 0 7 chrX 44113057 44113346 -118486584 - AluSx SINE Alu -25 287 1 1378 219 78 66 chrX 44113357 44113997 -118485933 + MER52A-int LTR ERV1 1686 2333 -2603 366 236 57 16 chrX 44114134 44114257 -118485673 + MER52A-int LTR ERV1 2391 2518 -2418 3518 25 0 0 chrX 44114257 44114662 -118485268 + L1PA2 LINE L1 5751 6155 0 2239 167 19 52 chrX 44114672 44114707 -118485223 + MER52A-int LTR ERV1 2509 2544 -2392 1428 111 38 46 chrX 44114707 44114809 -118485121 + L1MA4 LINE L1 6037 6138 -162 1928 172 0 3 chrX 44114809 44115106 -118484824 + AluJb SINE Alu 1 296 -16 1428 111 38 46 chrX 44115106 44115264 -118484666 + L1MA4 LINE L1 6138 6295 -5 2239 167 19 52 chrX 44115264 44115749 -118484181 + MER52A-int LTR ERV1 2544 3012 -1924 600 159 71 32 chrX 44115749 44115875 -118484055 + FLAM_C SINE Alu 2 132 -11 4652 166 54 99 chrX 44115882 44116264 -118483666 + MER52A-int LTR ERV1 2998 3396 -1540 2195 106 10 0 chrX 44116264 44116566 -118483364 + AluSx SINE Alu 1 305 -7 4652 166 54 99 chrX 44116566 44117290 -118482640 + MER52A-int LTR ERV1 3396 4151 -785 2086 109 4 0 chrX 44117290 44117566 -118482364 + AluSq SINE Alu 11 287 -26 4652 166 54 99 chrX 44117566 44117581 -118482349 + MER52A-int LTR ERV1 4151 4165 -771 1716 153 8 0 chrX 44117581 44117843 -118482087 + AluSx SINE Alu 11 274 -38 189 0 0 0 chrX 44117849 44117870 -118482060 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 4652 166 54 99 chrX 44117870 44118050 -118481880 + MER52A-int LTR ERV1 4170 4249 -687 319 218 138 11 chrX 44118056 44118143 -118481787 + LTR37A LTR ERV1 4 101 -325 798 214 153 98 chrX 44118146 44118533 -118481397 + MER52A-int LTR ERV1 4325 4732 -204 516 261 15 0 chrX 44118551 44118681 -118481249 - MER34 LTR ERV1 -410 132 1 266 303 10 20 chrX 44119007 44119106 -118480824 - MIR3 SINE MIR -50 158 61 2284 123 3 0 chrX 44119119 44119486 -118480444 - AluSx SINE Alu 0 368 1 8188 183 104 11 chrX 44120134 44121739 -118478191 + MER52A LTR ERV1 1 1755 0 4672 134 45 82 chrX 44121822 44122760 -118477170 - MER4D LTR ERV1 0 903 1 236 255 66 38 chrX 44122764 44122870 -118477060 + L1ME1 LINE L1 3248 3356 -2790 257 230 81 0 chrX 44122932 44123006 -118476924 + L1ME1 LINE L1 4672 4751 -1395 1996 166 168 109 chrX 44123007 44123498 -118476432 - MLT1E2 LTR MaLR -2 624 92 1936 157 0 3 chrX 44123498 44123803 -118476127 + AluJo SINE Alu 6 309 -3 1996 166 168 109 chrX 44123803 44123896 -118476034 - MLT1E2 LTR MaLR -534 92 6 4330 185 34 27 chrX 44123902 44125307 -118474623 + L1ME1 LINE L1 4747 6161 -5 2193 97 3 17 chrX 44125498 44125796 -118474134 + AluSx SINE Alu 1 294 -18 594 213 0 0 chrX 44126317 44126425 -118473505 - FRAM SINE Alu -9 167 60 1344 224 8 73 chrX 44126425 44126809 -118473121 + LTR37B LTR ERV1 48 406 -62 587 278 76 7 chrX 44126819 44127174 -118472756 + LTR16A LTR ERVL 9 450 0 243 261 0 31 chrX 44127195 44127209 -118472721 + GA-rich Low_complexity Low_complexity 2 15 -49 2068 116 4 0 chrX 44127209 44127484 -118472446 + AluY SINE Alu 1 276 -35 243 261 0 31 chrX 44127484 44127534 -118472396 + GA-rich Low_complexity Low_complexity 15 64 0 930 283 28 47 chrX 44127534 44127894 -118472036 + HERV16 LTR ERVL 38 390 -4606 304 253 12 12 chrX 44127901 44127984 -118471946 - HERV16 LTR ERVL -2258 3396 3314 1718 150 22 76 chrX 44127984 44128166 -118471764 - L1MB2 LINE L1 -37 6134 6058 1930 167 0 16 chrX 44128166 44128478 -118471452 - AluJb SINE Alu 0 312 6 1718 150 22 76 chrX 44128478 44128711 -118471219 - L1MB2 LINE L1 -113 6058 5814 443 149 0 0 chrX 44128733 44128800 -118471130 - AluJb SINE Alu -38 274 208 3911 265 53 50 chrX 44128888 44129233 -118470697 - HERV16 LTR ERVL -1900 3096 2754 1814 149 76 0 chrX 44129233 44129521 -118470409 - AluSx SINE Alu -2 310 1 3911 265 53 50 chrX 44129521 44130174 -118469756 - HERV16 LTR ERVL -2242 2754 2251 2752 124 64 31 chrX 44130174 44130370 -118469560 + MLT1C LTR MaLR 1 189 -278 393 70 0 0 chrX 44130370 44130427 -118469503 + (CA)n Simple_repeat Simple_repeat 1 57 0 2752 124 64 31 chrX 44130427 44130682 -118469248 + MLT1C LTR MaLR 189 467 0 3911 265 53 50 chrX 44130682 44131037 -118468893 - HERV16 LTR ERVL -2745 2251 1899 628 283 25 58 chrX 44131184 44131341 -118468589 + LTR16A LTR ERVL 103 249 -201 1121 188 81 75 chrX 44131341 44131713 -118468217 + MLT1A2 LTR MaLR 1 374 0 628 283 25 58 chrX 44131713 44131831 -118468099 + LTR16A LTR ERVL 249 369 -81 854 126 0 22 chrX 44131847 44131982 -118467948 + FLAM_C SINE Alu 2 133 0 1180 175 5 5 chrX 44132009 44132215 -118467715 + AluJo SINE Alu 85 290 -22 315 250 0 0 chrX 44132274 44132342 -118467588 + LTR37B LTR ERV1 401 468 0 1866 36 5 0 chrX 44134209 44134432 -118465498 + L1PA8 LINE L1 5949 6172 0 2420 79 0 0 chrX 44135645 44135937 -118463993 + AluSx SINE Alu 1 292 -20 7230 55 7 0 chrX 44136018 44137476 -118462454 + L1PA7 LINE L1 4692 6154 0 475 258 0 8 chrX 44138887 44139015 -118460915 + L2 LINE L2 3184 3310 -3 2216 95 23 0 chrX 44139074 44139378 -118460552 + AluSp SINE Alu 3 313 0 29971 38 3 0 chrX 44139571 44145714 -118454216 + L1PA4 LINE L1 1 6152 -3 375 23 0 0 chrX 44145817 44145861 -118454069 + (TG)n Simple_repeat Simple_repeat 2 45 0 2158 119 7 3 chrX 44146504 44146806 -118453124 - AluSx SINE Alu -9 303 1 936 238 8 31 chrX 44146849 44147110 -118452820 - MIR SINE MIR -5 257 3 230 231 154 8 chrX 44147510 44147627 -118452303 + MER113 DNA MER1_type? 91 224 -297 31 26 0 0 chrX 44147657 44147695 -118452235 + AT_rich Low_complexity Low_complexity 1 38 0 1774 165 7 3 chrX 44147695 44147980 -118451950 - AluJo SINE Alu -26 286 1 599 182 0 88 chrX 44147985 44148144 -118451786 + MER104 DNA Tc2 36 180 0 35 0 0 0 chrX 44148169 44148204 -118451726 + AT_rich Low_complexity Low_complexity 1 35 0 394 312 38 0 chrX 44148277 44148434 -118451496 - MIR SINE MIR -40 222 60 470 17 17 0 chrX 44149034 44149093 -118450837 + (TG)n Simple_repeat Simple_repeat 2 61 0 324 143 0 0 chrX 44149094 44149150 -118450780 + (GA)n Simple_repeat Simple_repeat 2 57 0 334 310 55 21 chrX 44149298 44149443 -118450487 + MIR SINE MIR 12 161 -101 919 159 25 4 chrX 44149654 44149830 -118450100 + MLT1D LTR MaLR 1 150 -355 1531 183 37 86 chrX 44149832 44150400 -118449530 + L1M4 LINE L1 2768 3307 -2839 715 191 33 60 chrX 44150400 44150532 -118449398 + L1MB2 LINE L1 5993 6120 -51 1830 185 0 3 chrX 44150532 44150845 -118449085 + AluJo SINE Alu 1 312 0 715 191 33 60 chrX 44150845 44150895 -118449035 + L1MB2 LINE L1 6120 6170 -1 213 68 27 68 chrX 44151944 44152018 -118447912 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 1995 132 0 14 chrX 44152034 44152321 -118447609 - AluSx SINE Alu -29 283 1 2125 103 3 7 chrX 44152524 44152816 -118447114 + AluSx SINE Alu 22 312 0 1898 159 19 7 chrX 44152854 44153162 -118446768 + AluSx SINE Alu 1 312 0 808 241 68 2 chrX 44153191 44153430 -118446500 + L1ME LINE L1 5353 5610 -517 271 273 39 12 chrX 44153536 44153653 -118446277 + MIR SINE MIR 34 150 -63 2197 93 0 4 chrX 44153721 44153999 -118445931 + AluSq SINE Alu 1 277 -36 527 0 16 0 chrX 44154006 44154069 -118445861 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 1896 133 8 0 chrX 44154079 44154343 -118445587 + AluSx SINE Alu 1 266 -46 225 171 29 14 chrX 44154346 44154416 -118445514 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 234 204 19 0 chrX 44154576 44154630 -118445300 + (TTG)n Simple_repeat Simple_repeat 1 55 0 2111 176 75 45 chrX 44154803 44155270 -118444660 + MER77 LTR ERV1 116 596 -9 27 0 0 0 chrX 44155361 44155388 -118444542 + AT_rich Low_complexity Low_complexity 1 27 0 2284 120 0 0 chrX 44155612 44155911 -118444019 + AluSx SINE Alu 1 299 -13 756 128 8 8 chrX 44155911 44156021 -118443909 - FLAM_C SINE Alu -198 114 2 270 252 71 71 chrX 44156249 44156404 -118443526 - MIR SINE MIR -59 203 49 2200 189 92 15 chrX 44157127 44157583 -118442347 - LTR42 LTR ERVL -2 493 3 298 263 128 64 chrX 44158321 44158524 -118441406 + L1M4 LINE L1 3595 3824 -2322 1523 196 22 0 chrX 44158524 44158800 -118441130 + AluJb SINE Alu 3 284 -28 298 263 128 64 chrX 44158800 44158893 -118441037 + L1M4 LINE L1 3824 3910 -2236 495 264 108 17 chrX 44159037 44159268 -118440662 + L1M4 LINE L1 3918 4169 -1977 642 222 0 0 chrX 44159293 44159419 -118440511 + AluJb SINE Alu 7 132 -180 463 296 94 23 chrX 44159420 44159728 -118440202 + L1M4 LINE L1 4164 4493 -1653 405 0 0 0 chrX 44159839 44159884 -118440046 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1885 105 18 11 chrX 44159886 44160163 -118439767 - AluSg SINE Alu -31 279 1 998 216 5 28 chrX 44160764 44160982 -118438948 + AluSg/x SINE Alu 85 297 -15 1735 171 0 0 chrX 44161640 44161927 -118438003 + AluSx SINE Alu 1 287 -25 696 259 11 0 chrX 44162527 44162701 -118437229 + L1MC4 LINE L1 7503 7678 -364 432 202 0 0 chrX 44162731 44162815 -118437115 + AluS SINE Alu 2 85 -228 1032 136 0 6 chrX 44162815 44162984 -118436946 + AluSc SINE Alu 141 308 -1 448 223 36 62 chrX 44162989 44163182 -118436748 + L1MC4 LINE L1 7706 7893 -149 243 61 0 0 chrX 44163207 44163240 -118436690 + (TG)n Simple_repeat Simple_repeat 1 33 0 336 233 47 19 chrX 44163258 44163365 -118436565 + L1MC4 LINE L1 7783 8019 -23 394 107 0 40 chrX 44163442 44163517 -118436413 - L1MB2 LINE L1 -2 6169 6098 601 233 0 0 chrX 44163592 44163763 -118436167 - FLAM_A SINE Alu 0 171 1 366 107 0 0 chrX 44164862 44164918 -118435012 + (CA)n Simple_repeat Simple_repeat 2 57 0 877 138 12 30 chrX 44165853 44166020 -118433910 - FRAM SINE Alu -2 164 1 22 35 0 0 chrX 44166322 44166351 -118433579 + GC_rich Low_complexity Low_complexity 1 29 0 365 231 25 41 chrX 44167102 44167223 -118432707 + L1MDb LINE L1 1293 1411 -4998 1812 174 44 14 chrX 44167235 44167598 -118432332 + MER41D LTR ERV1 1 374 -183 1474 179 0 49 chrX 44167613 44167898 -118432032 + AluJb SINE Alu 14 284 -28 580 277 110 20 chrX 44167926 44168226 -118431704 + L1M4 LINE L1 3841 4167 -1979 681 168 8 8 chrX 44168248 44168379 -118431551 + AluJb SINE Alu 2 132 -180 377 299 60 63 chrX 44168401 44168543 -118431387 + L1M4 LINE L1 4189 4330 -1816 2165 111 3 0 chrX 44168543 44168849 -118431081 + AluSg1 SINE Alu 3 309 0 377 299 60 63 chrX 44168849 44169007 -118430923 + L1M4 LINE L1 4330 4488 -1658 4652 35 0 0 chrX 44169701 44170244 -118429686 + L1PA2 LINE L1 5612 6154 -1 1074 201 0 27 chrX 44170285 44170504 -118429426 + AluJo SINE Alu 85 297 -15 1559 216 0 0 chrX 44171162 44171449 -118428481 + AluSx SINE Alu 1 287 -25 712 261 6 0 chrX 44172043 44172223 -118427707 + L1MC4 LINE L1 7498 7678 -364 3353 104 19 2 chrX 44172278 44172757 -118427173 - LTR15 LTR ERV1 -6 487 1 13660 84 1 2 chrX 44172757 44174514 -118425416 - HERV15 LTR ERV1 0 8735 6982 * 23317 73 14 2 chrX 44174507 44177460 -118422470 - HERV15 LTR ERV1 -1973 6762 3776 6863 189 26 18 chrX 44177460 44178895 -118421035 - HERV15 LTR ERV1 -5358 3377 1932 1322 281 19 3 chrX 44178884 44179204 -118420726 - HERV15 LTR ERV1 -7039 1387 1063 * 8395 105 37 14 chrX 44179282 44180541 -118419389 - HERV15 LTR ERV1 -7446 1289 1 3539 91 10 2 chrX 44180548 44181030 -118418900 - LTR15 LTR ERV1 -7 486 1 1603 160 3 58 chrX 44181030 44181342 -118418588 + AluSx SINE Alu 17 311 -1 654 217 26 99 chrX 44181342 44181567 -118418363 + L1MC4 LINE L1 7698 7891 -151 180 77 0 0 chrX 44181567 44181593 -118418337 + (TG)n Simple_repeat Simple_repeat 1 26 0 654 217 26 99 chrX 44181593 44181712 -118418218 + L1MC4 LINE L1 7891 8017 -25 404 91 0 39 chrX 44181792 44181869 -118418061 - L1MB2 LINE L1 0 6171 6098 639 233 0 0 chrX 44181967 44182100 -118417830 - FLAM_A SINE Alu 0 133 1 384 103 0 0 chrX 44183197 44183255 -118416675 + (CA)n Simple_repeat Simple_repeat 2 59 0 769 167 19 19 chrX 44184185 44184347 -118415583 - FRAM SINE Alu -1 165 4 294 244 23 46 chrX 44185487 44185618 -118414312 + L1MDb LINE L1 1289 1416 -4993 2058 169 39 0 chrX 44185624 44185984 -118413946 + MER41D LTR ERV1 1 374 -183 1364 214 6 57 chrX 44185987 44186305 -118413625 + AluJo SINE Alu 1 302 0 600 241 134 31 chrX 44186316 44186607 -118413323 + L1M4 LINE L1 3847 4167 -1979 758 161 8 0 chrX 44186629 44186759 -118413171 + AluJb SINE Alu 2 132 -180 432 288 93 53 chrX 44186760 44186925 -118413005 + L1M4 LINE L1 4153 4310 -1836 2109 123 7 0 chrX 44186925 44187227 -118412703 + AluSg1 SINE Alu 3 306 -3 432 288 93 53 chrX 44187227 44187384 -118412546 + L1M4 LINE L1 4310 4488 -1658 1327 163 0 46 chrX 44188093 44188332 -118411598 + AluJo SINE Alu 85 312 0 13170 145 7 69 chrX 44188342 44191164 -118408766 + L1P3 LINE L1 7 3003 -3458 1048 96 0 7 chrX 44191164 44191299 -118408631 + AluY SINE Alu 1 134 -177 2429 55 0 4 chrX 44191299 44191584 -118408346 + AluY SINE Alu 1 330 -5 460 0 0 0 chrX 44191584 44191635 -118408295 + (TAAA)n Simple_repeat Simple_repeat 2 152 0 13170 145 7 69 chrX 44191641 44192861 -118407069 + L1P3 LINE L1 3001 4024 -2437 982 131 6 25 chrX 44192891 44193051 -118406879 + L1MC1 LINE L1 6177 6333 0 1710 211 60 76 chrX 44193068 44193377 -118406553 + L1M4 LINE L1 3520 3832 -2314 1772 150 18 0 chrX 44193377 44193691 -118406239 + AluSx SINE Alu 1 319 0 1710 211 60 76 chrX 44193691 44193895 -118406035 + L1M4 LINE L1 3832 4025 -2121 2295 70 3 3 chrX 44193895 44194193 -118405737 - AluY SINE Alu -13 298 1 1710 211 60 76 chrX 44194193 44194297 -118405633 + L1M4 LINE L1 4025 4129 -2017 1508 135 8 8 chrX 44194301 44194538 -118405392 + AluJb SINE Alu 1 237 -75 477 272 103 38 chrX 44194541 44194754 -118405176 + L1ME1 LINE L1 5937 6139 -27 1846 149 7 0 chrX 44194799 44195107 -118404823 - AluJb SINE Alu -2 310 1 751 236 109 10 chrX 44195161 44195429 -118404501 - L1ME3A LINE L1 -218 5952 5660 191 327 9 26 chrX 44195948 44196061 -118403869 - MIR SINE MIR -82 180 70 183 156 0 0 chrX 44196518 44196550 -118403380 + GA-rich Low_complexity Low_complexity 3 34 0 2073 114 7 0 chrX 44197193 44197483 -118402447 + AluSx SINE Alu 1 292 -20 435 19 0 0 chrX 44197484 44197536 -118402394 + (GA)n Simple_repeat Simple_repeat 1 52 0 1849 141 0 0 chrX 44197552 44197822 -118402108 + AluJb SINE Alu 15 284 -28 403 311 119 8 chrX 44197933 44198168 -118401762 - MIR SINE MIR 0 262 2 240 278 28 0 chrX 44198257 44198329 -118401601 - MIR SINE MIR -112 150 77 2174 101 0 3 chrX 44198740 44199038 -118400892 - AluSx SINE Alu -15 297 1 547 185 129 138 chrX 44199058 44199398 -118400532 - L1ME3A LINE L1 -66 6104 5768 709 306 127 35 chrX 44199529 44199674 -118400256 - L1ME3A LINE L1 -946 5200 5070 1873 113 55 10 chrX 44199674 44199966 -118399964 - AluSg SINE Alu -5 305 1 709 306 127 35 chrX 44199966 44200417 -118399513 - L1ME3A LINE L1 -1076 5070 4549 1014 254 74 7 chrX 44200422 44200721 -118399209 - L2 LINE L2 -1247 2067 1749 24 0 0 0 chrX 44201353 44201377 -118398553 + AT_rich Low_complexity Low_complexity 1 24 0 193 171 24 0 chrX 44203266 44203307 -118396623 + L2 LINE L2 2501 2542 -772 1090 76 47 41 chrX 44203307 44203330 -118396600 + L1MA2 LINE L1 6132 6153 -151 1941 121 41 0 chrX 44203330 44203620 -118396310 + AluSx SINE Alu 1 302 -10 1090 76 47 41 chrX 44203620 44203768 -118396162 + L1MA2 LINE L1 6153 6304 0 28 0 0 0 chrX 44203768 44203796 -118396134 + AT_rich Low_complexity Low_complexity 1 28 0 774 222 1 10 chrX 44203822 44204013 -118395917 + L1MC4 LINE L1 6570 6842 -1051 2244 99 3 6 chrX 44204014 44204327 -118395603 + AluSx SINE Alu 1 312 0 310 285 121 9 chrX 44204333 44204500 -118395430 + HAL1 LINE L1 1032 3175 -1304 1225 186 40 108 chrX 44204503 44204948 -118394982 + L1MC5 LINE L1 6749 7163 -798 213 98 0 82 chrX 44205006 44205067 -118394863 + (TTAA)n Simple_repeat Simple_repeat 1 56 0 725 228 172 12 chrX 44205094 44205344 -118394586 + L1MC5 LINE L1 7397 7686 -275 334 114 0 0 chrX 44205366 44205410 -118394520 + Alu SINE Alu 1 44 -258 838 148 296 0 chrX 44205410 44205572 -118394358 + AluSg/x SINE Alu 90 299 -10 662 198 65 32 chrX 44205572 44205789 -118394141 + L1MC5 LINE L1 7702 7925 -36 261 0 0 0 chrX 44205792 44205821 -118394109 + (CA)n Simple_repeat Simple_repeat 1 29 0 1197 273 81 17 chrX 44205821 44206332 -118393598 + L2 LINE L2 2563 3133 -180 441 0 0 0 chrX 44206332 44206381 -118393549 + (CA)n Simple_repeat Simple_repeat 2 50 0 1197 273 81 17 chrX 44206381 44206575 -118393355 + L2 LINE L2 3133 3313 0 1781 159 7 0 chrX 44206987 44207277 -118392653 - AluJb SINE Alu -20 292 1 447 239 82 11 chrX 44207555 44207739 -118392191 - L1ME4a LINE L1 0 6121 5925 256 298 193 0 chrX 44207768 44207949 -118391981 - L1ME4a LINE L1 -276 5845 5630 2075 125 0 3 chrX 44207978 44208275 -118391655 + AluSq SINE Alu 1 296 -17 2080 103 0 0 chrX 44208276 44208549 -118391381 + AluSx SINE Alu 1 273 -39 261 0 0 0 chrX 44208561 44208590 -118391340 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2150 103 3 0 chrX 44209131 44209423 -118390507 - AluSx SINE Alu -19 293 1 810 157 0 22 chrX 44209581 44209715 -118390215 - FLAM_C SINE Alu 0 133 3 372 137 107 176 chrX 44209718 44209849 -118390081 - MIR SINE MIR -59 203 82 736 195 32 85 chrX 44212140 44212386 -118387544 + MER112 DNA MER1_type 17 249 -11 756 171 30 43 chrX 44212386 44212550 -118387380 + MIR SINE MIR 59 220 -42 231 286 59 34 chrX 44212507 44212626 -118387304 - MIR3 SINE MIR -10 198 77 * 313 312 9 18 chrX 44212639 44212748 -118387182 + MIR SINE MIR 2 109 -153 696 211 29 39 chrX 44213051 44213255 -118386675 - L2 LINE L2 0 3313 3112 331 328 47 29 chrX 44214258 44214563 -118385367 - L2 LINE L2 -262 3051 2739 336 326 81 29 chrX 44214591 44214763 -118385167 + MIR SINE MIR 63 243 -19 293 185 19 0 chrX 44214852 44214906 -118385024 + L2 LINE L2 3255 3309 -4 547 243 50 7 chrX 44215603 44215774 -118384156 + L1ME3 LINE L1 5986 6158 -4 24 32 0 0 chrX 44215878 44215909 -118384021 + AT_rich Low_complexity Low_complexity 1 31 0 413 252 10 10 chrX 44215926 44216029 -118383901 + MIR SINE MIR 60 162 -100 680 266 145 5 chrX 44216298 44216512 -118383418 - MIR SINE MIR -1 261 18 515 303 95 0 chrX 44217297 44217538 -118382392 + L2 LINE L2 2862 3125 -188 241 279 119 35 chrX 44217543 44217744 -118382186 + L2 LINE L2 3028 3245 -68 248 194 16 32 chrX 44218665 44218761 -118381169 + (CCG)n Simple_repeat Simple_repeat 1 94 0 195 139 0 0 chrX 44218957 44218993 -118380937 + (CGG)n Simple_repeat Simple_repeat 1 36 0 281 202 155 12 chrX 44220561 44220645 -118379285 - MIR SINE MIR -10 252 157 472 202 0 65 chrX 44220693 44220817 -118379113 - MLT1J LTR MaLR -3 508 393 1381 275 58 8 chrX 44220881 44221456 -118378474 + L2 LINE L2 2503 3114 -199 201 121 0 0 chrX 44222296 44222329 -118377601 + (T)n Simple_repeat Simple_repeat 1 33 0 504 335 5 31 chrX 44222872 44223066 -118376864 + MIR SINE MIR 71 259 -3 273 278 5 43 chrX 44224508 44224695 -118375235 + CT-rich Low_complexity Low_complexity 1 180 0 279 211 0 0 chrX 44225110 44225162 -118374768 + MIR SINE MIR 209 260 -2 460 304 118 23 chrX 44225162 44225677 -118374253 - L1ME4a LINE L1 -184 5937 5329 707 333 22 39 chrX 44225682 44225994 -118373936 - L1ME4a LINE L1 -829 5317 5011 695 260 48 32 chrX 44225994 44226244 -118373686 + MIR SINE MIR 7 260 -2 387 301 53 45 chrX 44226368 44226614 -118373316 - L1ME4a LINE L1 -1217 4929 4682 249 279 0 0 chrX 44226715 44226801 -118373129 + CT-rich Low_complexity Low_complexity 1 86 0 196 348 104 37 chrX 44226875 44227010 -118372920 - MIR3 SINE MIR -28 180 37 1512 140 19 8 chrX 44228416 44228673 -118371257 - MLT1C LTR MaLR -1 466 207 896 282 64 6 chrX 44229471 44229829 -118370101 + L2 LINE L2 2264 2642 -672 288 0 0 0 chrX 44230122 44230154 -118369776 + (TG)n Simple_repeat Simple_repeat 2 33 0 556 269 0 7 chrX 44230872 44231013 -118368917 + MIR SINE MIR 61 200 -62 563 210 67 0 chrX 44232183 44232302 -118367628 + MIR SINE MIR 20 146 -116 673 233 7 9 chrX 44232308 44232464 -118367466 - MIR SINE MIR -61 147 7 555 16 0 0 chrX 44232555 44232619 -118367311 + (TC)n Simple_repeat Simple_repeat 1 64 0 217 50 25 25 chrX 44232618 44232658 -118367272 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 2268 90 0 3 chrX 44233580 44233881 -118366049 + AluSg1 SINE Alu 1 300 -9 444 171 276 0 chrX 44233992 44234097 -118365833 - MER45A DNA AcHobo -44 134 1 332 205 259 36 chrX 44234100 44234266 -118365664 - MIR SINE MIR -35 227 25 2254 107 0 0 chrX 44234395 44234705 -118365225 + AluSx SINE Alu 1 310 -2 215 282 176 48 chrX 44235332 44235500 -118364430 + MIR SINE MIR 36 225 -37 216 330 18 0 chrX 44236010 44236122 -118363808 + (CCCTAA)n Simple_repeat Simple_repeat 2 115 0 271 354 17 11 chrX 44236741 44236919 -118363011 + (CCCCAA)n Simple_repeat Simple_repeat 1 179 0 210 234 0 0 chrX 44237700 44237747 -118362183 + (CCCCAG)n Simple_repeat Simple_repeat 6 52 0 189 147 0 0 chrX 44240462 44240496 -118359434 + (CACCC)n Simple_repeat Simple_repeat 2 35 0 1778 130 52 0 chrX 44242555 44242876 -118357054 + AluSx SINE Alu 1 335 0 366 250 119 45 chrX 44242880 44243148 -118356782 + L1MC5 LINE L1 7645 7932 -29 2259 99 0 10 chrX 44243152 44243464 -118356466 + AluSc SINE Alu 1 309 0 245 315 11 43 chrX 44243471 44243655 -118356275 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 390 299 19 22 chrX 44243710 44243967 -118355963 + GA-rich Low_complexity Low_complexity 1 257 -652 1830 170 20 0 chrX 44243967 44244273 -118355657 + AluJb SINE Alu 1 312 0 390 299 19 22 chrX 44244273 44244622 -118355308 + GA-rich Low_complexity Low_complexity 257 909 0 2198 90 0 0 chrX 44244733 44245010 -118354920 + AluSx SINE Alu 1 277 -35 192 40 0 0 chrX 44245011 44245036 -118354894 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 269 311 19 10 chrX 44245089 44245192 -118354738 - MIR SINE MIR -71 191 88 646 264 288 5 chrX 44246065 44246444 -118353486 - L2 LINE L2 -1 3312 2827 471 355 23 14 chrX 44247019 44247236 -118352694 + L1M4 LINE L1 5097 5315 -831 2099 140 3 0 chrX 44247307 44247614 -118352316 - AluSx SINE Alu -4 308 1 928 236 24 5 chrX 44247657 44247865 -118352065 + MIR SINE MIR 24 235 -27 2086 101 14 10 chrX 44248250 44248546 -118351384 - AluSx SINE Alu -15 297 1 2018 136 0 10 chrX 44248546 44248853 -118351077 - AluJb SINE Alu -8 304 1 605 217 97 11 chrX 44249395 44249542 -118350388 - MIR SINE MIR 0 262 96 1881 100 64 18 chrX 44249542 44249823 -118350107 + AluSg SINE Alu 1 294 -16 605 217 97 11 chrX 44249823 44249850 -118350080 - MIR SINE MIR -166 96 73 1283 180 118 37 chrX 44249954 44250226 -118349704 + AluJo SINE Alu 3 296 -6 2292 95 0 22 chrX 44250442 44250758 -118349172 + AluSg SINE Alu 1 309 -1 2335 93 0 3 chrX 44250763 44251065 -118348865 + AluSc SINE Alu 1 301 -8 564 262 143 18 chrX 44251233 44251401 -118348529 - MIR SINE MIR -62 200 12 2316 95 0 0 chrX 44252313 44252619 -118347311 + AluSx SINE Alu 1 306 -6 480 35 0 0 chrX 44252943 44253001 -118346929 + (TG)n Simple_repeat Simple_repeat 2 59 0 443 244 81 56 chrX 44253583 44253743 -118346187 + MIR SINE MIR 97 260 -2 2225 110 0 0 chrX 44253828 44254136 -118345794 + AluSx SINE Alu 1 308 -4 753 164 0 0 chrX 44254162 44254284 -118345646 + FLAM_C SINE Alu 14 135 -8 1000 163 18 0 chrX 44255038 44255204 -118344726 + FRAM SINE Alu 1 161 -15 342 326 61 8 chrX 44255209 44255341 -118344589 - L1M4 LINE L1 -1674 4472 4334 219 340 20 20 chrX 44255782 44255932 -118343998 + (CCCCAA)n Simple_repeat Simple_repeat 5 154 0 327 227 202 34 chrX 44256042 44256161 -118343769 + MIR SINE MIR 11 149 -113 857 213 51 37 chrX 44256163 44256379 -118343551 - MIR SINE MIR -29 233 15 258 350 11 17 chrX 44256443 44256620 -118343310 + (CCCCAA)n Simple_repeat Simple_repeat 5 180 0 2057 17 3 109 chrX 44258895 44259213 -118340717 + AluY SINE Alu 20 306 0 757 157 7 29 chrX 44259218 44259358 -118340572 + FLAM_C SINE Alu 7 143 0 2212 100 0 28 chrX 44259369 44259690 -118340240 + AluSx SINE Alu 1 312 0 2355 77 0 13 chrX 44259959 44260272 -118339658 + AluSg SINE Alu 1 309 -1 185 333 0 13 chrX 44260827 44260902 -118339028 + L2 LINE L2 2965 3038 -234 * 994 251 85 89 chrX 44260889 44261200 -118338730 - L2 LINE L2 0 3313 3003 2018 141 3 7 chrX 44261200 44261506 -118338424 + AluJo SINE Alu 1 305 -7 994 251 85 89 chrX 44261506 44261652 -118338278 - L2 LINE L2 -310 3003 2858 681 254 75 40 chrX 44263088 44263316 -118336614 - MIR SINE MIR -21 241 6 404 275 166 48 chrX 44263243 44263472 -118336458 + MIR SINE MIR 7 262 0 * 495 238 0 9 chrX 44264154 44264259 -118335671 - L2 LINE L2 -3 3310 3207 450 250 0 48 chrX 44264363 44264551 -118335379 + (CCCCAA)n Simple_repeat Simple_repeat 2 180 0 449 279 23 12 chrX 44264573 44264745 -118335185 + (CCCCAA)n Simple_repeat Simple_repeat 1 174 0 2311 96 0 6 chrX 44264794 44265106 -118334824 + AluSg SINE Alu 1 310 0 2257 75 26 10 chrX 44265204 44265509 -118334421 - AluY SINE Alu -1 310 1 1674 230 40 50 chrX 44266440 44266829 -118333101 - L2 LINE L2 -2 3311 2920 2192 109 0 10 chrX 44266829 44267131 -118332799 - AluSq SINE Alu -14 299 1 1674 230 40 50 chrX 44267131 44267166 -118332764 - L2 LINE L2 -393 2920 2886 1434 100 193 28 chrX 44267166 44267415 -118332515 + AluSc SINE Alu 3 292 -7 1674 230 40 50 chrX 44267415 44267660 -118332270 - L2 LINE L2 -427 2886 2638 2253 100 0 7 chrX 44267864 44268174 -118331756 - AluSx SINE Alu -4 308 1 1248 172 9 5 chrX 44268538 44268759 -118331171 + AluJo SINE Alu 86 307 -5 611 213 8 8 chrX 44268820 44268947 -118330983 - L2 LINE L2 -3 3310 3184 225 291 0 0 chrX 44268960 44269015 -118330915 - MIR SINE MIR -28 234 180 330 132 0 0 chrX 44269042 44269095 -118330835 + (GGA)n Simple_repeat Simple_repeat 1 53 0 248 247 41 63 chrX 44269702 44269818 -118330112 - MIR SINE MIR -66 142 30 573 271 99 36 chrX 44271340 44271561 -118328369 + MIR SINE MIR 4 238 -24 2141 108 9 22 chrX 44271569 44271885 -118328045 + AluSx SINE Alu 1 312 0 258 160 20 0 chrX 44271899 44271949 -118327981 + MIR SINE MIR 212 262 0 590 306 46 5 chrX 44271985 44272204 -118327726 - MIR SINE MIR -1 261 34 397 288 166 53 chrX 44273826 44273884 -118326046 - MLT1L LTR MaLR -21 594 544 514 283 11 48 chrX 44273884 44274071 -118325859 - MER104 DNA MER2_type 0 180 1 397 288 166 53 chrX 44274071 44274349 -118325581 - MLT1L LTR MaLR -71 544 220 184 348 0 45 chrX 44274861 44274950 -118324980 + L2 LINE L2 3138 3222 -50 196 146 98 0 chrX 44279270 44279311 -118320619 - MIR3 SINE MIR -48 160 116 210 208 0 0 chrX 44279497 44279550 -118320380 + GA-rich Low_complexity Low_complexity 2 54 0 1708 172 3 3 chrX 44279701 44279986 -118319944 + AluJb SINE Alu 1 285 -27 243 61 0 0 chrX 44279986 44280019 -118319911 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 628 269 30 41 chrX 44280530 44280609 -118319321 + MIR SINE MIR 20 98 -164 2267 85 0 13 chrX 44280609 44280915 -118319015 - AluSx SINE Alu -10 302 1 628 269 30 41 chrX 44280915 44281032 -118318898 + MIR SINE MIR 98 214 -48 21 0 0 0 chrX 44281061 44281082 -118318848 + AT_rich Low_complexity Low_complexity 1 21 0 1940 157 3 0 chrX 44281102 44281408 -118318522 + AluJb SINE Alu 6 312 0 2358 97 3 0 chrX 44282407 44282717 -118317213 - AluSq SINE Alu -2 311 1 480 209 76 9 chrX 44282765 44282870 -118317060 - MIR SINE MIR -63 145 34 204 40 0 0 chrX 44283919 44283944 -118315986 + (GGA)n Simple_repeat Simple_repeat 1 25 0 213 354 0 0 chrX 44283974 44284073 -118315857 + GA-rich Low_complexity Low_complexity 2 100 0 227 306 0 0 chrX 44284495 44284544 -118315386 - L2 LINE L2 -3 3310 3262 777 272 117 11 chrX 44284849 44285209 -118314721 - L2 LINE L2 -413 2901 2504 347 303 59 2 chrX 44285198 44285384 -118314546 - MIR SINE MIR -28 234 2 * 2041 123 0 3 chrX 44285462 44285755 -118314175 + AluJb SINE Alu 1 292 -20 1836 124 3 54 chrX 44285788 44286106 -118313824 + AluSx SINE Alu 1 303 0 634 336 33 0 chrX 44286107 44286381 -118313549 + L1MC/D LINE L1 5433 5715 -2093 918 273 28 12 chrX 44286535 44286784 -118313146 + MIR SINE MIR 7 259 -3 837 280 108 36 chrX 44286802 44286996 -118312934 - L1MC4a LINE L1 -1870 5938 5759 2036 101 0 44 chrX 44286996 44287312 -118312618 + AluSx SINE Alu 1 302 -10 837 280 108 36 chrX 44287312 44287589 -118312341 - L1MC4a LINE L1 -2049 5759 5433 2225 107 0 10 chrX 44287590 44287898 -118312032 - AluSx SINE Alu -7 305 1 196 344 109 16 chrX 44287929 44288121 -118311809 - L2 LINE L2 -1390 1924 1715 602 269 18 6 chrX 44288186 44288357 -118311573 + MIR SINE MIR 56 228 -34 34 0 0 0 chrX 44288574 44288608 -118311322 + GC_rich Low_complexity Low_complexity 1 34 0 449 340 63 59 chrX 44290152 44290810 -118309120 + L1M4c LINE L1 930 1721 -4592 357 351 40 7 chrX 44291237 44291385 -118308545 - L2 LINE L2 -21 3292 3140 296 267 79 109 chrX 44291449 44291547 -118308383 - L2 LINE L2 0 3313 3220 2110 72 65 0 chrX 44291547 44291825 -118308105 + AluSp SINE Alu 2 297 -16 296 267 79 109 chrX 44291825 44291891 -118308039 - L2 LINE L2 -93 3220 3154 348 291 7 73 chrX 44291991 44292142 -118307788 - L2 LINE L2 -8 3305 3165 834 212 6 0 chrX 44292178 44292343 -118307587 + MIR SINE MIR 91 256 -6 520 283 48 21 chrX 44292880 44293067 -118306863 + MIR SINE MIR 47 238 -24 416 273 38 38 chrX 44293379 44293511 -118306419 + MIR3 SINE MIR 7 138 -70 1250 265 30 56 chrX 44293514 44293822 -118306108 - L2 LINE L2 -5 3308 3014 2440 79 0 0 chrX 44293822 44294126 -118305804 + AluSc SINE Alu 1 304 -5 1250 265 30 56 chrX 44294126 44294278 -118305652 - L2 LINE L2 -299 3014 2860 214 204 330 0 chrX 44294274 44294362 -118305568 + MIR SINE MIR 143 259 -3 * 310 274 142 0 chrX 44295751 44295864 -118304066 + MIR SINE MIR 19 147 -61 549 311 62 0 chrX 44295905 44296098 -118303832 + MIR SINE MIR 33 237 -25 551 227 102 11 chrX 44296142 44296318 -118303612 + MIR SINE MIR 67 258 -4 2342 62 7 0 chrX 44296338 44296629 -118303301 + AluSp SINE Alu 1 293 -20 2159 134 0 0 chrX 44298016 44298352 -118301578 + AluJb SINE Alu 5 340 0 2366 97 0 0 chrX 44298355 44298664 -118301266 + AluSx SINE Alu 1 309 -3 295 235 385 0 chrX 44298815 44299002 -118300928 + L2 LINE L2 2485 2743 -571 622 176 38 94 chrX 44299002 44299161 -118300769 - AluJo SINE Alu -43 269 120 309 294 20 75 chrX 44299176 44299322 -118300608 + L2 LINE L2 3133 3270 -43 185 83 28 0 chrX 44299671 44299707 -118300223 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chrX 44302388 44302416 -118297514 + GC_rich Low_complexity Low_complexity 1 28 0 2346 66 13 0 chrX 44302915 44303216 -118296714 - AluSx SINE Alu -7 305 1 1106 148 21 11 chrX 44305365 44305554 -118294376 - AluJo SINE Alu -121 191 1 1539 241 73 33 chrX 44305605 44305712 -118294218 - L2 LINE L2 0 3313 3212 2301 88 10 0 chrX 44305712 44306006 -118293924 + AluSx SINE Alu 4 300 -12 1539 241 73 33 chrX 44306006 44306470 -118293460 - L2 LINE L2 -101 3212 2726 229 142 0 151 chrX 44306549 44306586 -118293344 + L1MC4 LINE L1 6614 6655 -1387 2223 102 3 0 chrX 44306586 44306881 -118293049 + AluSx SINE Alu 1 296 -16 2127 106 0 7 chrX 44306883 44307176 -118292754 + AluSp SINE Alu 1 291 -22 229 142 0 151 chrX 44307176 44307241 -118292689 + L1MC4 LINE L1 6656 6703 -1339 393 242 0 63 chrX 44307277 44307372 -118292558 + L1MC4 LINE L1 6614 6702 -1340 421 287 26 19 chrX 44307377 44307536 -118292394 - L1MC4 LINE L1 -1339 6983 1922 326 214 0 0 chrX 44307514 44307570 -118292360 - L1MC4 LINE L1 -1333 6989 6934 * 1859 145 0 0 chrX 44307576 44307852 -118292078 - AluJb SINE Alu -36 276 1 2393 233 86 46 chrX 44307852 44308606 -118291324 - L2 LINE L2 -777 2537 1748 2279 74 27 0 chrX 44308606 44308903 -118291027 + AluSx SINE Alu 1 305 -7 2393 233 86 46 chrX 44308903 44308937 -118290993 - L2 LINE L2 -1566 1748 1717 183 129 0 0 chrX 44312953 44312984 -118286946 + (CACCAT)n Simple_repeat Simple_repeat 3 33 0 1768 156 13 7 chrX 44313391 44313698 -118286232 - AluJo SINE Alu -3 309 1 355 244 57 16 chrX 44314824 44314848 -118285082 + MER91B DNA MER1_type 46 68 -122 2029 100 3 55 chrX 44314848 44315159 -118284771 - AluSx SINE Alu -17 295 1 355 244 57 16 chrX 44315159 44315257 -118284673 + MER91B DNA MER1_type 68 173 -17 626 269 24 18 chrX 44315932 44316099 -118283831 - MIR SINE MIR -35 227 60 583 242 113 60 chrX 44317365 44317486 -118282444 - MER46C DNA MER2_type -17 321 208 2369 72 7 0 chrX 44317486 44317790 -118282140 + AluSp SINE Alu 1 306 -7 583 242 113 60 chrX 44317790 44317856 -118282074 - MER46C DNA MER2_type -130 208 147 1864 152 0 52 chrX 44317856 44318001 -118281929 + AluJo SINE Alu 1 152 -160 2420 70 0 10 chrX 44318001 44318314 -118281616 + AluSg SINE Alu 1 310 0 1864 152 0 52 chrX 44318314 44318497 -118281433 + AluJo SINE Alu 152 312 0 583 242 113 60 chrX 44318497 44318610 -118281320 - MER46C DNA MER2_type -191 147 4 855 132 0 31 chrX 44318740 44318869 -118281061 + FLAM_C SINE Alu 1 125 -8 953 111 0 7 chrX 44319104 44319239 -118280691 - AluJo SINE Alu -178 134 1 200 328 0 0 chrX 44319242 44319303 -118280627 + MIR SINE MIR 83 143 -65 452 336 48 60 chrX 44319603 44319840 -118280090 + L2 LINE L2 2898 3136 -177 2363 90 6 0 chrX 44319840 44320151 -118279779 - AluSp SINE Alu 0 313 1 1836 173 20 0 chrX 44320151 44320452 -118279478 - AluJb SINE Alu -5 307 1 2360 79 0 0 chrX 44320457 44320760 -118279170 - AluSg1 SINE Alu -6 303 1 452 336 48 60 chrX 44320760 44320935 -118278995 + L2 LINE L2 3139 3312 -1 258 279 156 16 chrX 44320936 44321058 -118278872 + MIR SINE MIR 18 156 -106 2225 135 0 0 chrX 44326577 44326889 -118273041 + AluSx SINE Alu 1 312 0 184 406 31 0 chrX 44327129 44327225 -118272705 - MIR SINE MIR -96 166 68 1904 119 48 20 chrX 44328327 44328621 -118271309 + AluSg SINE Alu 1 302 -8 724 215 8 0 chrX 44328714 44328844 -118271086 - FLAM_C SINE Alu -2 131 1 981 181 6 0 chrX 44328855 44329026 -118270904 - FRAM SINE Alu -10 166 1 766 223 60 80 chrX 44329058 44329123 -118270807 - L1ME1 LINE L1 -55 6111 6046 1465 164 47 43 chrX 44329123 44329422 -118270508 + AluJo SINE Alu 1 300 -12 766 223 60 80 chrX 44329422 44329720 -118270210 - L1ME1 LINE L1 -120 6046 5755 911 192 112 69 chrX 44329722 44329998 -118269932 - AluJo SINE Alu -4 308 21 1099 186 46 65 chrX 44330000 44330054 -118269876 - L1ME1 LINE L1 -404 5762 5708 1295 197 51 109 chrX 44330054 44330080 -118269850 + MLT1B LTR MaLR 1 27 -363 183 42 0 0 chrX 44330080 44330104 -118269826 + (TA)n Simple_repeat Simple_repeat 2 25 0 1977 112 7 3 chrX 44330104 44330419 -118269511 - AluSq SINE Alu 0 316 1 1295 197 51 109 chrX 44330419 44330802 -118269128 + MLT1B LTR MaLR 25 388 -2 1099 186 46 65 chrX 44330802 44330953 -118268977 - L1ME1 LINE L1 -458 5708 5562 2089 81 10 39 chrX 44330953 44331261 -118268669 + AluSp SINE Alu 1 299 -14 1099 186 46 65 chrX 44331261 44331361 -118268569 - L1ME1 LINE L1 -604 5562 5462 1558 63 0 0 chrX 44333103 44333294 -118266636 - L1PA5 LINE L1 0 6154 5964 323 321 36 0 chrX 44333925 44334037 -118265893 + MIR SINE MIR 2 117 -145 2703 69 3 16 chrX 44334048 44334381 -118265549 + L1PA13 LINE L1 5805 6134 -29 1884 112 68 0 chrX 44334381 44334659 -118265271 - AluSx SINE Alu -15 297 1 2703 69 3 16 chrX 44334659 44334689 -118265241 + L1PA13 LINE L1 6134 6163 0 2269 92 0 19 chrX 44334695 44335035 -118264895 + AluY SINE Alu 1 311 0 2867 156 48 94 chrX 44335200 44335353 -118264577 - L1MB8 LINE L1 -1 6177 6018 1571 175 7 21 chrX 44335353 44335488 -118264442 + AluJb SINE Alu 2 137 -175 2192 112 0 13 chrX 44335488 44335801 -118264129 + AluSc SINE Alu 1 309 0 1571 175 7 21 chrX 44335801 44335950 -118263980 + AluJb SINE Alu 137 282 -30 279 79 0 0 chrX 44335950 44335988 -118263942 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1834 135 14 3 chrX 44335998 44336286 -118263644 - 7SLRNA srpRNA srpRNA -13 307 17 2867 156 48 94 chrX 44336286 44336806 -118263124 - L1MB8 LINE L1 -168 6010 5467 1769 151 0 33 chrX 44336806 44337105 -118262825 - AluSx SINE Alu -23 289 1 1974 141 10 0 chrX 44337114 44337413 -118262517 - AluSx SINE Alu -10 302 1 2867 156 48 94 chrX 44337413 44337529 -118262401 - L1MB8 LINE L1 -719 5459 5339 1969 147 79 108 chrX 44337529 44337823 -118262107 + MLT1D LTR MaLR 3 304 -201 1893 83 8 0 chrX 44337823 44338075 -118261855 + AluSq SINE Alu 52 305 -8 2379 53 40 0 chrX 44338077 44338376 -118261554 + AluY SINE Alu 1 311 0 1969 147 79 108 chrX 44338376 44338596 -118261334 + MLT1D LTR MaLR 305 505 0 2867 156 48 94 chrX 44338596 44338640 -118261290 - L1MB8 LINE L1 -838 5340 5360 317 207 17 0 chrX 44338646 44338704 -118261226 + L1MC4 LINE L1 6640 6698 -1344 2035 113 3 3 chrX 44338704 44338987 -118260943 - AluSx SINE Alu -29 283 1 2074 83 4 0 chrX 44339018 44339283 -118260647 - AluY SINE Alu -45 266 1 2253 100 0 0 chrX 44339283 44339573 -118260357 - AluSg SINE Alu -20 290 1 690 239 46 10 chrX 44339573 44339861 -118260069 - L1M4 LINE L1 -1970 4412 1421 361 235 25 12 chrX 44339864 44339943 -118259987 - LTR42 LTR ERVL 0 495 416 879 235 45 10 chrX 44339943 44340300 -118259630 + LTR2 LTR ERV1 1 401 -48 2574 111 5 13 chrX 44340303 44340691 -118259239 + Harlequin LTR ERV1 1 385 -6511 20117 164 15 2 chrX 44340759 44344145 -118255785 + Harlequin LTR ERV1 336 3740 -4073 1317 148 0 0 chrX 44344136 44344332 -118255598 - Harlequin LTR ERV1 -3061 4752 4557 * 1033 168 0 0 chrX 44344347 44344508 -118255422 - Harlequin LTR ERV1 -5428 2385 2225 24476 158 6 25 chrX 44344529 44344644 -118255286 + Harlequin LTR ERV1 3736 3852 -3961 2525 69 0 3 chrX 44344644 44344947 -118254983 + AluY SINE Alu 1 302 -9 24476 158 6 25 chrX 44344947 44348985 -118250945 + Harlequin LTR ERV1 3852 7811 -2 1247 235 121 10 chrX 44348985 44349389 -118250541 + LTR2 LTR ERV1 1 449 0 570 202 18 0 chrX 44349389 44349498 -118250432 - LTR42 LTR ERVL -76 419 309 408 216 0 0 chrX 44349502 44349576 -118250354 - Harlequin LTR ERV1 -1322 5574 5501 2019 135 7 0 chrX 44349587 44349890 -118250040 - LTR42 LTR ERVL -190 305 1 324 184 40 13 chrX 44349891 44349967 -118249963 - L1M4 LINE L1 -4859 1996 1919 2316 111 3 0 chrX 44349975 44350273 -118249657 + AluSq SINE Alu 8 306 -7 2341 102 3 13 chrX 44350273 44350587 -118249343 + AluSx SINE Alu 1 311 -1 1200 144 0 0 chrX 44350596 44350776 -118249154 + AluSg/x SINE Alu 121 300 -10 1764 159 23 23 chrX 44350788 44351089 -118248841 + AluJo SINE Alu 1 301 -11 263 210 0 16 chrX 44351094 44351156 -118248774 - L1M4 LINE L1 -5034 1925 1865 1385 115 206 0 chrX 44351160 44351412 -118248518 + MER83B LTR ERV1 6 309 -69 2011 101 94 11 chrX 44351412 44351699 -118248231 - AluSp SINE Alu 0 313 3 31 0 0 0 chrX 44351701 44351732 -118248198 + AT_rich Low_complexity Low_complexity 1 31 0 669 89 0 0 chrX 44351732 44351822 -118248108 - AluS SINE Alu -220 92 3 2187 120 0 22 chrX 44351824 44352141 -118247789 - AluSx SINE Alu -2 310 1 2481 74 0 16 chrX 44352149 44352458 -118247472 - AluY SINE Alu -1 310 7 546 141 0 0 chrX 44352464 44352549 -118247381 + MER83B LTR ERV1 294 378 0 432 0 0 0 chrX 44352569 44352617 -118247313 + (TATG)n Simple_repeat Simple_repeat 1 48 0 786 233 6 84 chrX 44352644 44352910 -118247020 - L1M4 LINE L1 -4990 1865 1630 2472 64 0 10 chrX 44352910 44353207 -118246723 - AluY SINE Alu -16 295 2 786 233 6 84 chrX 44353207 44353283 -118246647 - L1M4 LINE L1 -5225 1630 1550 2316 103 0 31 chrX 44353296 44353330 -118246600 - AluSx SINE Alu -2 310 276 261 0 0 0 chrX 44353330 44353359 -118246571 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2316 103 0 31 chrX 44353359 44353644 -118246286 - AluSx SINE Alu -36 276 1 2208 108 7 10 chrX 44353646 44353951 -118245979 - AluSq SINE Alu -9 304 1 629 213 47 7 chrX 44353952 44354102 -118245828 - L1M4 LINE L1 -6693 166 11 302 322 81 35 chrX 44354109 44354283 -118245647 - L1ME3A LINE L1 0 6170 5989 1660 167 80 53 chrX 44354425 44354604 -118245326 + MSTB1 LTR MaLR 3 176 -252 2400 82 0 3 chrX 44354604 44354897 -118245033 + AluSc SINE Alu 1 292 -17 721 82 18 0 chrX 44354902 44355012 -118244918 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 1660 167 80 53 chrX 44355012 44355233 -118244697 + MSTB1 LTR MaLR 179 418 -10 743 165 0 8 chrX 44355251 44355378 -118244552 + FLAM_C SINE Alu 2 127 -6 21 0 0 0 chrX 44355379 44355400 -118244530 + AT_rich Low_complexity Low_complexity 1 21 0 1033 204 108 9 chrX 44355416 44355647 -118244283 + AluJo SINE Alu 56 309 -3 2348 110 3 0 chrX 44355653 44355963 -118243967 + AluSp SINE Alu 1 311 -2 2042 134 3 10 chrX 44355966 44356279 -118243651 + AluSx SINE Alu 1 311 -1 2353 81 0 3 chrX 44356289 44356621 -118243309 + AluSx SINE Alu 2 332 0 1137 154 23 64 chrX 44356684 44356904 -118243026 - AluJo SINE Alu -67 245 35 2390 101 7 0 chrX 44356910 44357217 -118242713 - AluSq SINE Alu -4 309 1 2405 82 0 25 chrX 44357228 44357257 -118242673 - AluSq SINE Alu -3 310 282 372 22 0 0 chrX 44357257 44357302 -118242628 + (TG)n Simple_repeat Simple_repeat 1 45 0 2405 82 0 25 chrX 44357302 44357590 -118242340 - AluSq SINE Alu -31 282 1 331 328 41 32 chrX 44357590 44357740 -118242190 - L1M4 LINE L1 -780 5366 5219 1472 122 0 28 chrX 44357740 44357898 -118242032 - AluJb SINE Alu -23 289 128 209 30 61 0 chrX 44357898 44357931 -118241999 + T-rich Low_complexity Low_complexity 2 36 0 2290 100 0 0 chrX 44357931 44358212 -118241718 - AluSg SINE Alu -29 281 1 1472 122 0 28 chrX 44358212 44358266 -118241664 - AluJb SINE Alu -182 130 82 331 328 41 32 chrX 44358266 44358307 -118241623 - L1M4 LINE L1 -927 5219 5158 637 214 0 0 chrX 44358790 44358916 -118241014 - FLAM_A SINE Alu -7 135 10 2259 92 7 0 chrX 44358957 44359240 -118240690 + AluSx SINE Alu 9 293 -19 975 255 0 4 chrX 44359500 44359735 -118240195 + L1MD3 LINE L1 7426 7659 -336 2273 115 7 0 chrX 44359741 44360036 -118239894 + AluSx SINE Alu 1 297 -15 1549 78 11 0 chrX 44360036 44360227 -118239703 + AluSg SINE Alu 1 193 -117 2498 79 0 0 chrX 44360228 44360531 -118239399 - AluY SINE Alu -8 303 1 871 108 0 16 chrX 44360532 44360661 -118239269 + AluSg SINE Alu 183 309 -1 2218 96 0 10 chrX 44360681 44360974 -118238956 + AluY SINE Alu 1 290 -21 554 133 0 0 chrX 44360988 44361071 -118238859 - AluSg/x SINE Alu -17 292 210 818 172 0 0 chrX 44361071 44361199 -118238731 - FRAM SINE Alu -44 132 5 2053 153 3 0 chrX 44361415 44361749 -118238181 - AluSx SINE Alu 0 312 1 2014 140 0 0 chrX 44361779 44362058 -118237872 + AluSx SINE Alu 9 287 -25 278 67 22 0 chrX 44362058 44362103 -118237827 + (TA)n Simple_repeat Simple_repeat 2 47 0 914 180 6 17 chrX 44362346 44362524 -118237406 - FRAM SINE Alu 0 176 1 2215 129 0 16 chrX 44362555 44362872 -118237058 - AluSx SINE Alu 0 312 1 1592 177 0 4 chrX 44363034 44363299 -118236631 - AluJb SINE Alu -47 265 2 2429 109 0 0 chrX 44363374 44363686 -118236244 - AluSx SINE Alu 0 312 1 2300 88 17 0 chrX 44363765 44364059 -118235871 - AluSx SINE Alu 0 312 14 2393 101 3 0 chrX 44364075 44364381 -118235549 - AluSx SINE Alu -1 311 5 233 75 25 0 chrX 44364383 44364423 -118235507 - Alu SINE Alu -166 137 97 1070 155 0 6 chrX 44364493 44364661 -118235269 - FRAM SINE Alu -17 159 1 207 189 0 0 chrX 44364701 44364738 -118235192 + L2 LINE L2 3270 3306 -7 2457 84 0 3 chrX 44364817 44365127 -118234803 + AluSc SINE Alu 1 309 0 186 244 85 0 chrX 44365960 44366042 -118233888 - L2 LINE L2 -1017 2297 2209 1333 200 99 9 chrX 44366856 44367228 -118232702 - L2 LINE L2 -332 2981 2574 2280 122 0 3 chrX 44367600 44367912 -118232018 - AluSx SINE Alu -1 311 1 788 239 26 77 chrX 44367987 44368093 -118231837 + L2 LINE L2 2358 2468 -846 2339 103 0 0 chrX 44368093 44368395 -118231535 + AluSx SINE Alu 1 302 -10 788 239 26 77 chrX 44368395 44368598 -118231332 + L2 LINE L2 2468 2651 -663 996 268 156 22 chrX 44368603 44369076 -118230854 + L2 LINE L2 2777 3312 -1 430 213 32 0 chrX 44369556 44369650 -118230280 + MIR SINE MIR 108 204 -58 838 153 16 0 chrX 44369650 44369774 -118230156 + FLAM_C SINE Alu 1 126 -17 2471 77 6 19 chrX 44369800 44370113 -118229817 + AluY SINE Alu 1 309 -2 709 244 85 29 chrX 44370189 44370289 -118229641 + MER46C DNA MER2_type 1 94 -244 2347 123 0 0 chrX 44370289 44370599 -118229331 - AluSx SINE Alu -2 310 1 709 244 85 29 chrX 44370599 44370744 -118229186 + MER46C DNA MER2_type 94 260 -78 314 138 0 17 chrX 44370744 44370802 -118229128 - MER116 DNA Mariner 0 80 24 2218 109 0 0 chrX 44370835 44371143 -118228787 + AluSq SINE Alu 1 308 0 2319 111 7 0 chrX 44373520 44373826 -118226104 - AluSg SINE Alu -2 308 1 239 103 26 0 chrX 44373827 44373866 -118226064 - L1MD3 LINE L1 -1059 6936 6897 1764 169 0 24 chrX 44373866 44374033 -118225897 - AluJo SINE Alu -29 283 124 2312 106 3 0 chrX 44374033 44374334 -118225596 + AluSq SINE Alu 1 302 -11 1764 169 0 24 chrX 44374334 44374456 -118225474 - AluJo SINE Alu -188 124 1 2027 135 0 30 chrX 44375244 44375548 -118224382 + AluSx SINE Alu 5 299 -13 813 150 0 46 chrX 44375671 44375824 -118224106 - AluJo SINE Alu -19 283 138 21 0 0 0 chrX 44376805 44376826 -118223104 + AT_rich Low_complexity Low_complexity 1 21 0 889 143 7 36 chrX 44376826 44376966 -118222964 - AluJo SINE Alu -176 136 1 2516 91 0 0 chrX 44376973 44377281 -118222649 - AluSg SINE Alu -2 308 1 319 301 0 0 chrX 44377457 44377540 -118222390 - L2 LINE L2 -4 3309 3227 1145 262 97 4 chrX 44377545 44378026 -118221904 - L2 LINE L2 -22 3291 2752 1211 123 32 21 chrX 44378215 44378402 -118221528 - AluJb SINE Alu -9 303 115 2389 103 0 0 chrX 44378402 44378702 -118221228 + AluSx SINE Alu 1 300 -12 745 166 58 0 chrX 44378711 44378850 -118221080 + MLT1A1 LTR MaLR 55 201 -164 2707 53 0 0 chrX 44378921 44379224 -118220706 + AluY SINE Alu 1 303 -8 1263 183 101 8 chrX 44379231 44379488 -118220442 - MSTD LTR MaLR -2 394 114 646 173 60 0 chrX 44379513 44379646 -118220284 - MLT1B LTR MaLR -46 344 204 234 0 0 0 chrX 44379655 44379681 -118220249 + (TC)n Simple_repeat Simple_repeat 2 27 0 248 208 0 0 chrX 44379691 44379739 -118220191 - MSTD LTR MaLR -334 94 47 2096 125 0 0 chrX 44379741 44380020 -118219910 - AluSx SINE Alu -7 305 27 1818 178 26 0 chrX 44380101 44380404 -118219526 - AluJo SINE Alu -1 311 1 2334 93 23 0 chrX 44380409 44380711 -118219219 - AluSx SINE Alu -3 309 1 663 234 31 92 chrX 44380722 44380786 -118219144 - MIR SINE MIR -10 252 186 2040 96 0 86 chrX 44380786 44381130 -118218800 - AluSx SINE Alu 0 317 1 663 234 31 92 chrX 44381130 44381324 -118218606 - MIR SINE MIR -76 186 8 431 313 89 16 chrX 44381379 44381625 -118218305 - L1ME3 LINE L1 -335 5827 5564 724 243 26 31 chrX 44382116 44382316 -118217614 - MIR SINE MIR 0 262 61 1608 193 7 26 chrX 44382375 44382681 -118217249 - AluJo SINE Alu -12 300 1 24 0 0 0 chrX 44382830 44382854 -118217076 + AT_rich Low_complexity Low_complexity 1 24 0 1556 176 0 24 chrX 44382854 44383109 -118216821 - AluJb SINE Alu -33 279 31 192 111 0 0 chrX 44383249 44383285 -118216645 + (TATG)n Simple_repeat Simple_repeat 2 37 0 1977 144 7 3 chrX 44383285 44383569 -118216361 - AluSx SINE Alu -27 285 1 1270 124 0 6 chrX 44383569 44383746 -118216184 - AluSg/x SINE Alu -3 306 131 1883 154 20 10 chrX 44383747 44384046 -118215884 - AluSx SINE Alu -10 302 1 2435 74 0 0 chrX 44384053 44384383 -118215547 - AluSx SINE Alu 0 330 1 1872 182 0 10 chrX 44384660 44384967 -118214963 - AluJo SINE Alu -8 304 1 271 161 74 37 chrX 44385272 44385318 -118214612 - MER20B DNA MER1_type -6 777 725 2569 66 3 0 chrX 44385318 44385619 -118214311 + AluSp SINE Alu 1 302 -11 271 161 74 37 chrX 44385619 44385653 -118214277 - MER20B DNA MER1_type -58 725 694 235 347 71 0 chrX 44385768 44385866 -118214064 + L2 LINE L2 3166 3270 -2 326 317 150 6 chrX 44386114 44386281 -118213649 + MIR SINE MIR 15 205 -57 2680 42 0 6 chrX 44387936 44388247 -118211683 + AluY SINE Alu 1 309 -2 2678 61 0 0 chrX 44388661 44388972 -118210958 - AluY SINE Alu 0 311 1 2292 99 3 0 chrX 44389137 44389430 -118210500 - AluSx SINE Alu -18 294 1 1620 193 7 0 chrX 44389665 44389945 -118209985 - AluJo SINE Alu -30 282 1 2118 136 0 3 chrX 44389954 44390256 -118209674 - AluSx SINE Alu -10 302 2 1264 172 31 4 chrX 44390283 44390510 -118209420 + AluJo SINE Alu 64 296 -16 2225 113 0 3 chrX 44390512 44390822 -118209108 + AluSq SINE Alu 1 309 -4 2215 96 3 3 chrX 44390842 44391144 -118208786 + AluSx SINE Alu 1 302 -10 227 174 0 0 chrX 44391166 44391212 -118208718 + Alu SINE Alu 254 299 -4 2037 102 49 0 chrX 44391433 44391717 -118208213 + AluSc SINE Alu 1 298 -11 898 200 6 0 chrX 44391728 44391893 -118208037 + FRAM SINE Alu 1 166 -10 1699 179 13 3 chrX 44391940 44392242 -118207688 + AluJo SINE Alu 1 305 -7 2075 100 10 26 chrX 44392402 44392712 -118207218 + AluSg SINE Alu 1 305 -5 2396 65 0 0 chrX 44392712 44393005 -118206925 + AluY SINE Alu 1 293 -18 1068 207 30 0 chrX 44393044 44393242 -118206688 - AluJo SINE Alu -108 204 1 1402 96 5 0 chrX 44393384 44393571 -118206359 + AluSp SINE Alu 1 188 -125 604 141 0 0 chrX 44393571 44393663 -118206267 - AluS SINE Alu -220 92 1 347 291 90 8 chrX 44393703 44393837 -118206093 - L2 LINE L2 0 3313 3169 270 45 68 0 chrX 44393949 44393993 -118205937 + AluJb SINE Alu 87 133 -169 2008 137 7 0 chrX 44393993 44394285 -118205645 - AluSx SINE Alu -18 294 1 1591 112 0 0 chrX 44394410 44394624 -118205306 + AluSg/x SINE Alu 81 294 -18 1744 153 10 35 chrX 44394631 44394945 -118204985 + AluJo SINE Alu 1 306 -6 1101 204 238 0 chrX 44394945 44395180 -118204750 + AluSp SINE Alu 1 291 -12 1825 78 108 0 chrX 44395263 44395532 -118204398 + AluSg SINE Alu 1 298 -12 1389 253 78 5 chrX 44395592 44396030 -118203900 + MER119 DNA MER1_type 3 472 -111 504 174 60 40 chrX 44396111 44396260 -118203670 - L1ME1 LINE L1 -70 6096 5945 2265 64 34 0 chrX 44396328 44396624 -118203306 - AluY SINE Alu -4 307 2 2866 9 0 0 chrX 44396688 44397006 -118202924 - AluYb8 SINE Alu 0 318 1 2251 104 0 0 chrX 44397008 44397305 -118202625 - AluSx SINE Alu -5 307 11 2093 71 46 11 chrX 44397351 44397634 -118202296 + AluY SINE Alu 1 293 -18 2029 119 7 7 chrX 44397645 44397930 -118202000 + AluSq SINE Alu 10 294 -19 1316 172 18 85 chrX 44397979 44398111 -118201819 - L1MB2 LINE L1 0 6171 6032 1934 117 14 3 chrX 44398111 44398401 -118201529 + AluSx SINE Alu 1 293 -19 1316 172 18 85 chrX 44398401 44398657 -118201273 - L1MB2 LINE L1 -139 6032 5814 1188 191 38 0 chrX 44398658 44398868 -118201062 - AluSg/x SINE Alu 0 312 95 * 1395 138 0 0 chrX 44398867 44399070 -118200860 + AluSg/x SINE Alu 88 290 -22 681 161 55 81 chrX 44399070 44399173 -118200757 - L1M4 LINE L1 -5370 1172 1068 2219 112 0 0 chrX 44399173 44399469 -118200461 - AluSx SINE Alu -16 296 1 681 161 55 81 chrX 44399469 44399601 -118200329 - L1M4 LINE L1 -5474 1068 943 676 194 15 8 chrX 44399601 44399735 -118200195 - FRAM SINE Alu -4 172 38 1985 229 21 19 chrX 44399756 44400037 -118199893 - L1M4 LINE L1 -5589 953 669 2166 120 0 9 chrX 44400037 44400353 -118199577 - AluSq SINE Alu 0 313 1 1985 229 21 19 chrX 44400353 44400555 -118199375 - L1M4 LINE L1 -5873 669 469 785 167 0 129 chrX 44400555 44400741 -118199189 - AluJb SINE Alu -12 300 139 529 257 82 6 chrX 44400741 44400924 -118199006 + L2 LINE L2 1993 2189 -1125 1069 173 11 0 chrX 44400924 44401101 -118198829 - AluSg/x SINE Alu 0 310 129 2126 107 3 3 chrX 44401101 44401399 -118198531 - AluSq SINE Alu -15 298 1 1069 173 11 0 chrX 44401399 44401412 -118198518 - AluSg/x SINE Alu -181 129 118 189 94 0 0 chrX 44401412 44401444 -118198486 + (A)n Simple_repeat Simple_repeat 1 32 0 437 113 0 0 chrX 44401489 44401551 -118198379 + AluJ/FLAM SINE Alu 1 62 -250 583 171 7 59 chrX 44401565 44401584 -118198346 + LTR23 LTR ERV1 3 21 -416 2080 137 3 0 chrX 44401584 44401890 -118198040 + AluSx SINE Alu 3 309 -3 583 171 7 59 chrX 44401890 44402022 -118197908 + LTR23 LTR ERV1 21 146 -291 2287 87 0 0 chrX 44402022 44402311 -118197619 + AluSq SINE Alu 1 289 -24 249 122 0 0 chrX 44402311 44402352 -118197578 + MER41A LTR ERV1 514 554 0 1779 162 0 13 chrX 44402596 44402905 -118197025 - AluJb SINE Alu -7 305 1 400 202 0 0 chrX 44402905 44403004 -118196926 - L1MEc LINE L1 -5557 839 741 2070 235 51 43 chrX 44403017 44403563 -118196367 - L1MEc LINE L1 -5702 694 141 2075 108 10 10 chrX 44403563 44403860 -118196070 + AluSx SINE Alu 1 297 -15 2070 235 51 43 chrX 44403860 44403959 -118195971 - L1MEc LINE L1 -6255 141 44 758 132 66 8 chrX 44403970 44404091 -118195839 - FLAM_C SINE Alu -15 128 1 394 369 172 10 chrX 44404107 44404445 -118195485 - L2 LINE L2 -896 2418 2136 2285 105 0 13 chrX 44404445 44404579 -118195351 + AluSg SINE Alu 1 135 -175 2510 50 0 0 chrX 44404579 44404876 -118195054 + AluSg SINE Alu 1 297 -13 2285 105 0 13 chrX 44404876 44405054 -118194876 + AluSg SINE Alu 135 309 -1 394 369 172 10 chrX 44405054 44405319 -118194611 - L2 LINE L2 -1178 2136 1717 977 108 29 0 chrX 44405584 44405723 -118194207 - U4 snRNA snRNA -1 144 2 1021 122 10 61 chrX 44405726 44405746 -118194184 - AluSg/x SINE Alu -9 303 284 2027 112 13 7 chrX 44405746 44406051 -118193879 - AluSq SINE Alu -6 307 1 1021 122 10 61 chrX 44406051 44406207 -118193723 - AluSg/x SINE Alu -28 284 135 2298 84 0 3 chrX 44406207 44406504 -118193426 - AluSg SINE Alu -14 296 1 1021 122 10 61 chrX 44406504 44406522 -118193408 - AluSg/x SINE Alu -177 135 118 2210 73 3 38 chrX 44406547 44406863 -118193067 + AluSp SINE Alu 1 305 -8 2342 90 0 0 chrX 44407008 44407320 -118192610 + AluSx SINE Alu 1 312 0 2179 122 0 0 chrX 44409207 44409511 -118190419 - AluSx SINE Alu -8 304 1 188 239 0 0 chrX 44410280 44410326 -118189604 - L2 LINE L2 -5 3308 3263 949 186 0 6 chrX 44410327 44410499 -118189431 - MIR SINE MIR -20 242 72 403 318 9 14 chrX 44410678 44410835 -118189095 + MIR3 SINE MIR 17 171 -49 240 312 54 11 chrX 44413203 44413296 -118186634 - L2 LINE L2 -182 3090 2994 1637 173 18 3 chrX 44416751 44417034 -118182896 + AluJo SINE Alu 1 287 -25 1539 160 26 67 chrX 44417034 44417153 -118182777 + AluJb SINE Alu 2 124 -188 2210 73 13 17 chrX 44417153 44417455 -118182475 - AluSg SINE Alu -9 301 1 1539 160 26 67 chrX 44417455 44417648 -118182282 + AluJb SINE Alu 124 301 -11 2121 88 35 0 chrX 44418093 44418376 -118181554 + AluSg SINE Alu 1 293 -17 201 292 0 15 chrX 44419356 44419421 -118180509 + GA-rich Low_complexity Low_complexity 5 68 0 200 196 109 0 chrX 44421177 44421223 -118178707 + L2 LINE L2 3187 3237 -76 953 228 91 9 chrX 44421257 44421489 -118178441 + MIR SINE MIR 2 252 -10 213 143 0 0 chrX 44421527 44421562 -118178368 - MIR SINE MIR -108 154 120 2327 81 0 19 chrX 44421628 44421938 -118177992 - AluSq SINE Alu -9 304 1 419 281 127 20 chrX 44424235 44424488 -118175442 - MER46C DNA MER2_type -36 302 23 2109 77 46 11 chrX 44424513 44424662 -118175268 - AluSp SINE Alu -18 295 153 2521 56 0 0 chrX 44424662 44424966 -118174964 - AluY SINE Alu -7 304 1 2109 77 46 11 chrX 44424966 44425101 -118174829 - AluSp SINE Alu -160 153 1 380 243 99 0 chrX 44426003 44426114 -118173816 - MIR SINE MIR -57 205 84 194 314 179 0 chrX 44426115 44426255 -118173675 + L2 LINE L2 2807 2971 -343 300 330 26 9 chrX 44426370 44426485 -118173445 + L2 LINE L2 3197 3313 0 2191 115 3 10 chrX 44427423 44427736 -118172194 - AluSx SINE Alu -1 311 1 849 203 0 25 chrX 44429056 44429219 -118170711 + AluJo SINE Alu 1 159 -153 300 227 0 80 chrX 44429694 44429769 -118170161 - MIR SINE MIR -55 153 85 333 68 0 0 chrX 44429994 44430038 -118169892 + (CCA)n Simple_repeat Simple_repeat 2 45 0 183 225 0 0 chrX 44430486 44430526 -118169404 + MIR SINE MIR 110 145 -63 952 152 88 34 chrX 44430841 44431045 -118168885 + MIR SINE MIR 46 260 -2 2468 69 0 0 chrX 44431229 44431534 -118168396 - AluSg1 SINE Alu -4 305 1 21 0 0 0 chrX 44434203 44434224 -118165706 + GC_rich Low_complexity Low_complexity 1 21 0 2132 115 0 3 chrX 44435449 44435744 -118164186 + AluSx SINE Alu 1 294 -18 2389 91 0 0 chrX 44435819 44436126 -118163804 + AluSx SINE Alu 6 312 0 1029 204 84 14 chrX 44436134 44436418 -118163512 - L1MB8 LINE L1 -81 6097 5794 2364 84 3 0 chrX 44436881 44437192 -118162738 - AluSp SINE Alu -1 312 1 570 186 0 172 chrX 44437546 44437612 -118162318 - MLT1D LTR MaLR 0 505 429 2315 91 3 0 chrX 44437612 44437919 -118162011 + AluSc SINE Alu 1 308 -1 570 186 0 172 chrX 44437919 44437951 -118161979 - MLT1D LTR MaLR -76 429 393 1657 123 37 60 chrX 44437951 44438216 -118161714 + AluSx SINE Alu 12 271 -41 198 0 0 0 chrX 44438216 44438238 -118161692 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1657 123 37 60 chrX 44438238 44438272 -118161658 + AluSx SINE Alu 271 304 -8 570 186 0 172 chrX 44438272 44438373 -118161557 - MLT1D LTR MaLR -112 393 340 1447 124 76 55 chrX 44438373 44438663 -118161267 + MER1B DNA MER1_type 1 296 -43 2068 114 0 0 chrX 44438665 44438946 -118160984 + AluSx SINE Alu 1 281 -31 956 102 0 0 chrX 44438828 44438947 -118160983 + AluSg/x SINE Alu 162 307 0 244 0 0 0 chrX 44438947 44438974 -118160956 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 810 186 25 69 chrX 44438997 44439229 -118160701 - MLT1D LTR MaLR -198 269 47 1191 147 0 0 chrX 44439229 44439399 -118160531 + AluJb SINE Alu 132 301 -11 1989 139 14 0 chrX 44439408 44439697 -118160233 + AluSx SINE Alu 1 291 -21 2335 93 0 13 chrX 44439704 44440015 -118159915 + AluY SINE Alu 1 307 -4 604 118 0 0 chrX 44440477 44440570 -118159360 + AluSg/x SINE Alu 215 307 -3 2287 112 3 10 chrX 44440639 44440953 -118158977 + AluSx SINE Alu 1 312 0 2544 53 7 3 chrX 44440967 44441266 -118158664 + AluY SINE Alu 3 302 -9 1725 151 3 69 chrX 44441506 44441669 -118158261 - AluJo SINE Alu -28 284 149 2510 77 0 16 chrX 44441669 44441982 -118157948 - AluSc SINE Alu -1 308 1 1725 151 3 69 chrX 44441982 44442122 -118157808 - AluJo SINE Alu -163 149 1 2391 89 0 7 chrX 44442162 44442464 -118157466 - AluSx SINE Alu -12 300 1 2174 87 7 20 chrX 44442465 44442765 -118157165 - AluSx SINE Alu -16 296 1 2518 68 3 3 chrX 44442855 44443163 -118156767 - AluSx SINE Alu -4 308 1 217 271 34 0 chrX 44443440 44443499 -118156431 + L2 LINE L2 3212 3272 0 433 222 69 35 chrX 44443504 44443648 -118156282 - MIR SINE MIR -6 256 108 185 128 0 26 chrX 44444391 44444430 -118155500 + (GGA)n Simple_repeat Simple_repeat 1 38 0 2449 85 0 0 chrX 44446652 44446946 -118152984 + AluSc SINE Alu 1 294 -15 2430 97 0 0 chrX 44450167 44450466 -118149464 - AluSg SINE Alu -11 299 1 2132 128 23 10 chrX 44450557 44450863 -118149067 - AluSx SINE Alu -2 310 1 2183 131 3 0 chrX 44451056 44451362 -118148568 - AluSg SINE Alu -3 307 1 2392 88 3 19 chrX 44451382 44451700 -118148230 - AluSq SINE Alu 0 313 1 2027 146 3 3 chrX 44451702 44451997 -118147933 - AluJb SINE Alu -17 295 1 2636 52 0 3 chrX 44452179 44452484 -118147446 + AluY SINE Alu 1 304 -7 2230 101 0 42 chrX 44452522 44452866 -118147064 - AluSx SINE Alu 0 312 1 461 125 0 0 chrX 44454687 44454759 -118145171 - Alu SINE Alu -6 305 234 1371 117 0 29 chrX 44454793 44454930 -118145000 + AluSx SINE Alu 1 132 -180 2110 110 31 7 chrX 44454930 44455222 -118144708 + AluSg SINE Alu 1 299 -11 1371 117 0 29 chrX 44455222 44455289 -118144641 + AluSx SINE Alu 132 199 -113 492 103 0 0 chrX 44455290 44455358 -118144572 + AluSc SINE Alu 66 133 -176 2121 113 0 47 chrX 44455358 44455676 -118144254 + AluSx SINE Alu 1 303 -9 964 314 60 22 chrX 44455680 44456133 -118143797 - L2 LINE L2 -18 3295 2826 206 182 0 23 chrX 44456628 44456672 -118143258 + (TAA)n Simple_repeat Simple_repeat 3 45 0 606 266 21 84 chrX 44456676 44456787 -118143143 - MIR SINE MIR 0 262 171 2362 65 25 0 chrX 44456787 44457092 -118142838 - AluSp SINE Alu 0 312 1 606 266 21 84 chrX 44457092 44457216 -118142714 - MIR SINE MIR -91 171 41 203 200 127 0 chrX 44459851 44459906 -118140024 + L2 LINE L2 3137 3198 -74 2120 129 17 3 chrX 44459935 44460237 -118139693 - AluSx SINE Alu -6 306 1 2175 127 17 0 chrX 44460364 44460664 -118139266 - AluSx SINE Alu -7 305 1 2109 108 0 54 chrX 44460674 44460881 -118139049 - AluSx SINE Alu 0 330 113 2228 110 3 0 chrX 44460881 44461173 -118138757 - AluSg SINE Alu -17 293 1 2359 103 0 3 chrX 44461173 44461473 -118138457 - AluSx SINE Alu -13 299 1 2109 108 0 54 chrX 44461473 44461611 -118138319 - AluSx SINE Alu -215 115 1 2110 112 7 43 chrX 44461651 44461954 -118137976 - AluSx SINE Alu -20 292 1 2381 103 0 3 chrX 44461972 44462284 -118137646 - AluY SINE Alu 0 311 1 1099 173 25 25 chrX 44462304 44462441 -118137489 - L1MD3 LINE L1 -16 7979 7840 2483 78 16 0 chrX 44462441 44462747 -118137183 + AluY SINE Alu 1 311 0 1099 173 25 25 chrX 44462747 44462846 -118137084 - L1MD3 LINE L1 -154 7841 7743 1658 260 80 30 chrX 44462854 44463393 -118136537 - MLT1E LTR MaLR -13 580 15 2592 136 29 100 chrX 44463456 44463536 -118136394 + L1MD3 LINE L1 6668 6752 -1243 2290 118 0 0 chrX 44463536 44463841 -118136089 - AluSq SINE Alu -8 305 1 2592 136 29 100 chrX 44463841 44463996 -118135934 + L1MD3 LINE L1 6752 6916 -1079 2555 80 0 3 chrX 44463996 44464308 -118135622 + AluSq SINE Alu 1 311 -2 2592 136 29 100 chrX 44464308 44464371 -118135559 + L1MD3 LINE L1 6916 6982 -1013 2368 98 0 0 chrX 44464371 44464668 -118135262 + AluSc SINE Alu 1 297 -12 2592 136 29 100 chrX 44464668 44464805 -118135125 + L1MD3 LINE L1 6982 7049 -946 876 207 0 0 chrX 44464805 44464969 -118134961 + FAM SINE Alu 1 164 -11 2592 136 29 100 chrX 44464969 44465162 -118134768 + L1MD3 LINE L1 7049 7254 -741 646 175 67 0 chrX 44465170 44465290 -118134640 + AluJb SINE Alu 2 129 -183 2043 103 92 0 chrX 44465292 44465573 -118134357 - AluSx SINE Alu -5 307 1 23 0 0 0 chrX 44465573 44465596 -118134334 + AT_rich Low_complexity Low_complexity 1 23 0 2346 64 3 20 chrX 44465601 44465899 -118134031 + AluY SINE Alu 1 293 -18 502 162 27 36 chrX 44465910 44466021 -118133909 + MLT1F1 LTR MaLR 13 122 -445 2303 123 0 0 chrX 44466021 44466329 -118133601 + AluSx SINE Alu 1 308 -4 1595 82 5 0 chrX 44466330 44466525 -118133405 + AluSc SINE Alu 1 196 -113 263 32 0 0 chrX 44466525 44466556 -118133374 - AluY SINE Alu -215 93 63 1315 128 0 39 chrX 44466556 44466760 -118133170 - AluSx SINE Alu -115 197 2 444 37 0 0 chrX 44466766 44466820 -118133110 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2471 87 7 0 chrX 44466822 44467132 -118132798 - AluSx SINE Alu 0 312 1 2332 96 3 3 chrX 44467293 44467594 -118132336 - AluSx SINE Alu -11 301 1 386 259 0 9 chrX 44467598 44467706 -118132224 + L1MEc LINE L1 45 151 -6245 985 178 18 0 chrX 44467706 44467875 -118132055 + AluJb SINE Alu 133 304 -8 480 216 10 0 chrX 44467875 44467972 -118131958 + L1MEc LINE L1 137 234 -6162 1953 113 31 9 chrX 44467986 44468312 -118131618 + L1MB4 LINE L1 5848 6180 0 1976 206 130 51 chrX 44468312 44468719 -118131211 + L1M4 LINE L1 3335 3708 -2438 2367 113 3 0 chrX 44468719 44469030 -118130900 - AluSx SINE Alu 0 312 1 1976 206 130 51 chrX 44469030 44469186 -118130744 + L1M4 LINE L1 3708 3850 -2296 2357 95 0 16 chrX 44469186 44469503 -118130427 + AluSq SINE Alu 1 312 -1 1976 206 130 51 chrX 44469503 44469622 -118130308 + L1M4 LINE L1 3850 4072 -2074 2342 79 30 13 chrX 44469648 44469951 -118129979 - AluSq SINE Alu -5 308 1 1617 140 115 11 chrX 44469952 44470230 -118129700 - AluSg SINE Alu -3 307 1 1236 187 0 9 chrX 44470293 44470507 -118129423 + AluSx SINE Alu 1 212 -100 368 96 0 9 chrX 44470507 44470599 -118129331 + AluSg/x SINE Alu 76 248 -52 1278 164 0 22 chrX 44470599 44470652 -118129278 + AluJb SINE Alu 85 138 -174 2099 148 0 7 chrX 44470652 44470955 -118128975 + AluSg SINE Alu 1 301 -9 1278 164 0 22 chrX 44470955 44471132 -118128798 + AluJb SINE Alu 138 310 -2 1880 196 53 24 chrX 44471136 44471294 -118128636 + L1M4 LINE L1 4476 4628 -1518 2570 51 14 0 chrX 44471294 44471589 -118128341 - AluSp SINE Alu -14 299 1 1880 196 53 24 chrX 44471589 44471883 -118128047 + L1M4 LINE L1 4628 4941 -1205 2085 119 0 10 chrX 44471896 44472190 -118127740 - AluSx SINE Alu 0 312 22 335 263 47 84 chrX 44472204 44472274 -118127656 + L1ME2 LINE L1 5972 6043 -121 2320 101 0 0 chrX 44472274 44472572 -118127358 - AluSg SINE Alu -12 298 1 335 263 47 84 chrX 44472572 44472620 -118127310 + L1ME2 LINE L1 6043 6091 -73 2479 66 10 13 chrX 44472620 44472925 -118127005 - AluY SINE Alu -7 304 1 335 263 47 84 chrX 44472925 44472995 -118126935 + L1ME2 LINE L1 6091 6154 -10 2736 29 0 22 chrX 44473010 44473326 -118126604 + AluY SINE Alu 1 309 -2 570 233 0 8 chrX 44473348 44473477 -118126453 + AluJo SINE Alu 2 129 -183 323 341 0 11 chrX 44473488 44473576 -118126354 - L1MC4 LINE L1 -1339 6703 6617 2294 81 18 0 chrX 44473576 44473860 -118126070 - AluSq SINE Alu -24 289 1 2416 65 0 7 chrX 44473866 44474160 -118125770 - AluSc SINE Alu -17 292 1 1244 145 0 0 chrX 44474179 44474351 -118125579 + AluJo SINE Alu 130 301 -11 706 144 0 17 chrX 44474356 44474474 -118125456 + AluSg/x SINE Alu 174 289 -21 994 188 53 122 chrX 44474487 44474864 -118125066 + L1MC4a LINE L1 6352 6702 -1106 2249 138 0 0 chrX 44474873 44475185 -118124745 - AluSx SINE Alu 0 312 1 1009 159 7 0 chrX 44475245 44475396 -118124534 + AluJo SINE Alu 6 157 -155 1187 153 0 11 chrX 44475397 44475580 -118124350 + AluJb SINE Alu 115 295 -17 2103 118 3 39 chrX 44475588 44475893 -118124037 + AluSq SINE Alu 1 294 -19 784 208 6 6 chrX 44475895 44476054 -118123876 + AluJo SINE Alu 137 295 -7 2353 111 0 0 chrX 44476066 44476372 -118123558 + AluSq SINE Alu 3 308 -5 2170 130 0 16 chrX 44476375 44476512 -118123418 + AluSx SINE Alu 1 139 -173 9406 24 0 0 chrX 44476512 44478453 -118121477 + L1PA3 LINE L1 4235 6155 0 2170 130 0 16 chrX 44478453 44478630 -118121300 + AluSx SINE Alu 139 310 -2 1911 185 31 24 chrX 44478702 44478975 -118120955 - MER68 LTR ERV1 -148 414 135 2054 120 3 3 chrX 44478975 44479296 -118120634 - AluSx SINE Alu 0 321 1 1911 185 31 24 chrX 44479296 44479404 -118120526 - MER68 LTR ERV1 -427 135 29 1844 103 4 0 chrX 44479466 44479709 -118120221 - AluSx SINE Alu -10 302 59 998 222 63 0 chrX 44479740 44479961 -118119969 - L1MC4 LINE L1 -513 7529 7295 388 94 0 0 chrX 44479961 44480014 -118119916 + AluJo SINE Alu 87 139 -163 1591 85 0 24 chrX 44480019 44480231 -118119699 + AluSq SINE Alu 1 207 -106 1203 95 0 0 chrX 44480231 44480379 -118119551 - AluSq/x SINE Alu -164 148 1 2434 94 0 0 chrX 44480379 44480687 -118119243 - AluSx SINE Alu -4 308 1 849 150 52 0 chrX 44480688 44480861 -118119069 - L1MC4 LINE L1 -828 7214 7033 763 87 0 0 chrX 44480882 44480985 -118118945 - L1MC4 LINE L1 -1153 6889 6787 531 261 29 19 chrX 44480977 44481184 -118118746 + L1 LINE L1 4141 4349 -1797 * 983 196 0 12 chrX 44481205 44481373 -118118557 + FAM SINE Alu 6 171 -14 325 238 29 57 chrX 44481384 44481489 -118118441 + L1 LINE L1 4366 4467 -1679 512 228 20 13 chrX 44481489 44481638 -118118292 + L1MC3 LINE L1 6086 6235 -1550 1929 132 48 0 chrX 44481639 44481934 -118117996 + AluSx SINE Alu 1 309 -3 2135 141 0 10 chrX 44481943 44482256 -118117674 + AluJb SINE Alu 1 310 -2 2364 81 3 19 chrX 44482262 44482569 -118117361 + AluSx SINE Alu 1 302 -10 2402 97 3 0 chrX 44482569 44482879 -118117051 + AluSp SINE Alu 1 312 -1 1096 103 0 0 chrX 44482885 44483021 -118116909 + AluSq/x SINE Alu 1 136 -177 2395 96 0 10 chrX 44483021 44483324 -118116606 + AluSx SINE Alu 1 300 -12 862 148 8 0 chrX 44483327 44483449 -118116481 - AluJo/FLAM SINE Alu -189 123 1 2409 64 7 7 chrX 44483458 44483756 -118116174 - AluSq SINE Alu -15 298 1 1117 209 104 3 chrX 44483880 44484167 -118115763 - L1ME3 LINE L1 -90 6072 5757 380 240 23 38 chrX 44484530 44484652 -118115278 + MIR SINE MIR 31 153 -76 26 0 0 0 chrX 44484660 44484686 -118115244 + AT_rich Low_complexity Low_complexity 1 26 0 2490 59 0 0 chrX 44484686 44484976 -118114954 - AluY SINE Alu -21 290 1 2157 72 11 0 chrX 44484979 44485244 -118114686 - AluSx SINE Alu -6 306 39 1562 279 78 7 chrX 44485265 44485713 -118114217 - MLT1J LTR MaLR -31 480 1 253 257 71 0 chrX 44486948 44487018 -118112912 - MER91B DNA MER1_type -26 164 90 2296 103 3 0 chrX 44487043 44487333 -118112597 + AluSx SINE Alu 2 292 -20 1025 187 21 43 chrX 44487386 44487621 -118112309 + MIR SINE MIR 12 241 -21 292 175 39 10 chrX 44488641 44488744 -118111186 + (TCTCTG)n Simple_repeat Simple_repeat 3 108 0 229 273 29 36 chrX 44488751 44488803 -118111127 + CT-rich Low_complexity Low_complexity 1 52 -86 2542 87 3 0 chrX 44488803 44489115 -118110815 - AluSp SINE Alu 0 313 1 229 273 29 36 chrX 44489115 44489201 -118110729 + CT-rich Low_complexity Low_complexity 52 138 0 214 328 0 0 chrX 44489326 44489384 -118110546 - L2 LINE L2 -92 3180 3123 333 0 0 0 chrX 44489450 44489487 -118110443 + (CA)n Simple_repeat Simple_repeat 2 38 0 591 69 0 0 chrX 44489822 44489894 -118110036 + AluS SINE Alu 24 95 -217 367 31 0 0 chrX 44489894 44489945 -118109985 - AluY SINE Alu -258 44 2 2194 112 0 6 chrX 44490208 44490522 -118109408 - AluSx SINE Alu 0 312 1 240 265 20 51 chrX 44490532 44490630 -118109300 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 830 168 7 21 chrX 44491299 44491442 -118108488 + FLAM_C SINE Alu 2 142 -1 2102 116 13 3 chrX 44491509 44491812 -118108118 + AluSq SINE Alu 1 306 -7 2323 90 0 0 chrX 44491928 44492227 -118107703 + AluSq SINE Alu 1 299 -14 268 269 124 54 chrX 44492247 44492528 -118107402 - L1MC4 LINE L1 -307 7735 7334 225 250 28 14 chrX 44492545 44492617 -118107313 - MIR SINE MIR -71 191 119 189 0 0 0 chrX 44492896 44492917 -118107013 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 386 298 16 25 chrX 44493266 44493511 -118106419 + CT-rich Low_complexity Low_complexity 1 242 0 180 296 0 0 chrX 44493637 44493681 -118106249 - MIR SINE MIR -164 98 55 368 328 17 11 chrX 44494070 44494274 -118105656 + (TCCA)n Simple_repeat Simple_repeat 1 205 0 216 0 0 0 chrX 44495234 44495258 -118104672 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 349 273 12 0 chrX 44495632 44495804 -118104126 + (TGGA)n Simple_repeat Simple_repeat 4 177 0 384 294 7 28 chrX 44495817 44495960 -118103970 + (TGGA)n Simple_repeat Simple_repeat 4 143 0 221 283 0 8 chrX 44496123 44496243 -118103687 + (TGGA)n Simple_repeat Simple_repeat 4 122 0 401 271 94 52 chrX 44496393 44496585 -118103345 - MIR SINE MIR -43 219 20 181 152 0 0 chrX 44497127 44497160 -118102770 - MIR SINE MIR -61 147 115 223 240 0 0 chrX 44497592 44497642 -118102288 + (CTG)n Simple_repeat Simple_repeat 3 52 0 2198 116 0 0 chrX 44500065 44500367 -118099563 - AluSx SINE Alu -10 302 1 372 224 31 31 chrX 44500368 44500466 -118099464 + MIR3 SINE MIR 104 201 -7 260 280 138 5 chrX 44500470 44500660 -118099270 + MIR SINE MIR 39 256 -6 23 0 0 0 chrX 44500785 44500808 -118099122 + AT_rich Low_complexity Low_complexity 1 23 0 268 285 180 23 chrX 44501085 44501257 -118098673 - MIR SINE MIR -5 257 59 278 205 19 28 chrX 44501878 44501966 -118097964 - MIR SINE MIR -60 148 60 256 320 94 8 chrX 44502657 44502785 -118097145 - L2 LINE L2 -214 3058 2920 2285 77 7 3 chrX 44503246 44503543 -118096387 - AluSc SINE Alu -11 298 1 1981 93 0 99 chrX 44503546 44503742 -118096188 - AluSq SINE Alu -12 301 150 2202 111 3 0 chrX 44503742 44504048 -118095882 - AluSg SINE Alu -3 307 1 1981 93 0 99 chrX 44504048 44504185 -118095745 - AluSq SINE Alu -163 150 1 976 245 36 5 chrX 44504185 44504482 -118095448 - L2 LINE L2 -235 3078 2775 628 233 140 40 chrX 44504498 44504726 -118095204 - MIR SINE MIR -1 261 11 247 196 0 0 chrX 44504751 44504797 -118095133 + MIR SINE MIR 205 250 -12 2407 71 0 0 chrX 44504822 44505119 -118094811 - AluY SINE Alu -14 297 1 2319 95 3 0 chrX 44505125 44505430 -118094500 - AluSx SINE Alu -6 306 1 316 240 279 0 chrX 44507142 44507246 -118092684 - MIR3 SINE MIR -37 171 39 281 198 245 28 chrX 44507387 44507493 -118092437 + MIR SINE MIR 22 150 -112 * 1098 332 102 10 chrX 44507491 44508270 -118091660 - L2 LINE L2 0 3272 2397 452 297 38 38 chrX 44508686 44508871 -118091059 - MIR SINE MIR -65 197 13 264 259 213 0 chrX 44508890 44508998 -118090932 - MIR SINE MIR -14 248 118 617 81 40 10 chrX 44509002 44509101 -118090829 + U6 snRNA snRNA 1 102 -5 186 323 21 21 chrX 44509123 44509219 -118090711 - MIR SINE MIR -81 127 32 2149 103 0 22 chrX 44509323 44509642 -118090288 + AluJo SINE Alu 1 312 0 342 45 0 0 chrX 44510524 44510568 -118089362 + (CCG)n Simple_repeat Simple_repeat 1 44 0 207 211 14 14 chrX 44510736 44510807 -118089123 + (CCG)n Simple_repeat Simple_repeat 3 73 0 * 240 253 23 0 chrX 44510795 44510882 -118089048 + (CGG)n Simple_repeat Simple_repeat 1 89 0 198 0 0 0 chrX 44511951 44511973 -118087957 + (CA)n Simple_repeat Simple_repeat 2 23 0 926 112 8 15 chrX 44514026 44514160 -118085770 + FLAM_A SINE Alu 1 133 0 282 270 0 22 chrX 44514698 44514787 -118085143 + MIR SINE MIR 45 131 -131 187 343 46 9 chrX 44515506 44515614 -118084316 + MIR SINE MIR 41 152 -56 2084 172 0 26 chrX 44515787 44516176 -118083754 - L1MB8 LINE L1 0 6178 5800 2196 109 0 6 chrX 44516202 44516514 -118083416 - AluSx SINE Alu -2 310 1 2252 79 0 3 chrX 44516662 44516953 -118082977 - AluY SINE Alu -21 290 1 1666 226 41 68 chrX 44517355 44517424 -118082506 - MLT1D LTR MaLR 0 505 436 2284 73 0 67 chrX 44517424 44517754 -118082176 + AluSg1 SINE Alu 1 308 -1 1666 226 41 68 chrX 44517754 44518114 -118081816 - MLT1D LTR MaLR -69 436 68 2053 102 48 0 chrX 44518122 44518417 -118081513 - AluSx SINE Alu -1 311 3 1783 138 13 20 chrX 44518417 44518582 -118081348 - AluJb SINE Alu -16 296 130 2217 107 0 0 chrX 44518582 44518890 -118081040 - AluSx SINE Alu -4 308 1 1783 138 13 20 chrX 44518890 44519020 -118080910 - AluJb SINE Alu -182 130 1 1666 226 41 68 chrX 44519020 44519106 -118080824 - MLT1D LTR MaLR -437 68 3 381 250 132 26 chrX 44519180 44519332 -118080598 - MIR SINE MIR -73 189 22 2145 114 0 16 chrX 44519904 44520220 -118079710 - AluSx SINE Alu -1 311 1 2443 73 3 3 chrX 44520552 44520865 -118079065 - AluSp SINE Alu 0 313 1 2023 134 0 19 chrX 44520876 44521189 -118078741 - AluSx SINE Alu -5 307 1 315 345 52 0 chrX 44521280 44521396 -118078534 + L2 LINE L2 3151 3272 0 283 258 168 3 chrX 44521979 44522122 -118077808 - MIR3 SINE MIR -79 183 1 24 0 0 0 chrX 44522426 44522450 -118077480 + AT_rich Low_complexity Low_complexity 1 24 0 878 210 101 34 chrX 44522476 44522716 -118077214 - MER46C DNA MER2_type -23 315 54 2407 72 0 0 chrX 44522716 44523020 -118076910 + AluY SINE Alu 1 304 -7 878 210 101 34 chrX 44523020 44523046 -118076884 - MER46C DNA MER2_type -284 54 31 2197 100 3 3 chrX 44523243 44523544 -118076386 - AluSp SINE Alu -12 301 1 400 291 47 20 chrX 44524384 44524532 -118075398 - MIR SINE MIR -96 166 15 874 214 21 83 chrX 44524647 44524984 -118074946 - L1MC5 LINE L1 -28 7933 7618 263 262 195 20 chrX 44525137 44525286 -118074644 + MIR3 SINE MIR 30 204 -4 413 275 112 17 chrX 44525322 44525500 -118074430 + MIR SINE MIR 49 243 -19 626 101 9 0 chrX 44525947 44526056 -118073874 + (TG)n Simple_repeat Simple_repeat 2 111 0 236 280 140 0 chrX 44526702 44526795 -118073135 - MIR SINE MIR -109 153 48 2317 94 0 7 chrX 44526815 44527124 -118072806 - AluSg SINE Alu -3 307 1 210 299 11 46 chrX 44527145 44527232 -118072698 + MIR SINE MIR 48 131 -77 240 259 59 87 chrX 44527782 44527923 -118072007 - MIR3 SINE MIR -11 197 54 180 246 53 18 chrX 44528967 44529024 -118070906 - MIR SINE MIR -115 147 89 2228 100 0 3 chrX 44529563 44529864 -118070066 - AluSq SINE Alu -13 300 1 345 368 88 0 chrX 44530490 44530661 -118069269 - MIR SINE MIR -14 248 63 1128 133 0 0 chrX 44531729 44531894 -118068036 + FRAM SINE Alu 1 165 -1 182 376 32 0 chrX 44531911 44532004 -118067926 - L2 LINE L2 -274 2998 2903 244 309 105 46 chrX 44532039 44532191 -118067739 + L2 LINE L2 3082 3242 -30 520 288 0 65 chrX 44532215 44532313 -118067617 - MIR SINE MIR -13 249 171 2368 82 0 0 chrX 44532313 44532616 -118067314 - AluSx SINE Alu -9 303 1 520 288 0 65 chrX 44532616 44532732 -118067198 - MIR SINE MIR -91 171 49 216 214 0 0 chrX 44532732 44532774 -118067156 + T-rich Low_complexity Low_complexity 1 42 0 412 300 8 17 chrX 44532800 44532920 -118067010 + MIR SINE MIR 34 152 -56 219 333 54 0 chrX 44534134 44534227 -118065703 + MIR SINE MIR 10 107 -155 1355 178 55 20 chrX 44534500 44534556 -118065374 - L1MC3 LINE L1 -2 7783 7730 2218 103 0 7 chrX 44534556 44534856 -118065074 + AluSx SINE Alu 1 298 -14 1355 178 55 20 chrX 44534856 44535271 -118064659 - L1MC3 LINE L1 -55 7730 5814 1329 148 0 130 chrX 44535287 44535611 -118064319 - AluSx SINE Alu -30 282 1 2014 117 7 13 chrX 44535646 44535946 -118063984 + AluSx SINE Alu 1 298 -14 653 194 25 90 chrX 44535968 44536069 -118063861 - L1MC2 LINE L1 -11 6333 6227 2251 83 7 0 chrX 44536069 44536401 -118063529 - AluSq SINE Alu 0 334 1 653 194 25 90 chrX 44536401 44536472 -118063458 - L1MC2 LINE L1 -117 6227 6171 2328 83 3 0 chrX 44536472 44536773 -118063157 - AluSq SINE Alu -11 302 1 653 194 25 90 chrX 44536773 44536798 -118063132 - L1MC2 LINE L1 -173 6171 6146 * 1488 161 68 7 chrX 44536785 44537095 -118062835 - L1MC3 LINE L1 -256 7529 7201 271 277 42 34 chrX 44537097 44537216 -118062714 - MLT1F1 LTR MaLR -434 133 14 2200 86 0 10 chrX 44537291 44537593 -118062337 - AluSq SINE Alu -14 299 1 2532 156 52 86 chrX 44537594 44538136 -118061794 - L1MC3 LINE L1 -1002 6783 6224 2428 64 0 3 chrX 44538136 44538448 -118061482 - AluY SINE Alu 0 311 1 2532 156 52 86 chrX 44538448 44538528 -118061402 - L1MC3 LINE L1 -1561 6224 6143 2168 94 7 10 chrX 44538528 44538825 -118061105 - AluSx SINE Alu -10 302 7 2532 156 52 86 chrX 44538825 44538844 -118061086 - L1MC3 LINE L1 -1642 6143 6125 208 0 0 0 chrX 44538844 44538867 -118061063 + (TTTTA)n Simple_repeat Simple_repeat 3 170 0 2169 91 3 3 chrX 44538867 44539164 -118060766 - AluSx SINE Alu -1 319 1 2532 156 52 86 chrX 44539164 44539425 -118060505 - L1MC3 LINE L1 -1659 6126 5858 1680 148 24 24 chrX 44539425 44539716 -118060214 - AluJb SINE Alu -11 301 11 2532 156 52 86 chrX 44539716 44540302 -118059628 - L1MC3 LINE L1 -1927 5858 5339 3875 175 86 22 chrX 44540305 44541075 -118058855 + MER21B LTR ERV1 40 858 -5 2275 86 0 7 chrX 44541618 44541921 -118058009 + AluSx SINE Alu 1 301 -11 2447 60 0 0 chrX 44542970 44543272 -118056658 - AluY SINE Alu -9 302 1 1127 267 100 30 chrX 44543285 44544039 -118055891 - L2 LINE L2 -5 3308 2468 225 242 71 99 chrX 44546776 44546833 -118053097 + MIR SINE MIR 86 143 -119 2219 107 0 0 chrX 44546833 44547132 -118052798 + AluSx SINE Alu 1 299 -13 225 242 71 99 chrX 44547132 44547256 -118052674 + MIR SINE MIR 143 262 0 263 261 11 11 chrX 44549846 44549938 -118049992 + (TG)n Simple_repeat Simple_repeat 2 93 0 2225 92 0 0 chrX 44551101 44551396 -118048534 - AluSx SINE Alu -17 295 1 2104 105 0 3 chrX 44551407 44551702 -118048228 - AluSg SINE Alu -16 294 1 1130 37 7 0 chrX 44551703 44551839 -118048091 - AluSp SINE Alu -176 137 1 201 288 0 45 chrX 44551939 44552005 -118047925 - L2 LINE L2 0 3313 3251 322 227 23 11 chrX 44552068 44552156 -118047774 - L2 LINE L2 -1 3312 3224 214 253 160 0 chrX 44552219 44552294 -118047636 - L2 LINE L2 -2 3311 3225 1350 163 156 0 chrX 44552345 44552615 -118047315 - AluJo SINE Alu 0 312 1 192 259 19 0 chrX 44552720 44552774 -118047156 - MIR SINE MIR -76 132 78 207 0 0 0 chrX 44554138 44554161 -118045769 + (GCCTG)n Simple_repeat Simple_repeat 3 25 0 186 43 0 0 chrX 44554691 44554714 -118045216 + (T)n Simple_repeat Simple_repeat 1 23 0 1286 137 40 0 chrX 44555669 44555895 -118044035 - AluSx SINE Alu -77 235 1 189 0 0 0 chrX 44556829 44556850 -118043080 + (TG)n Simple_repeat Simple_repeat 1 21 0 296 290 46 30 chrX 44557785 44557916 -118042014 + MIR SINE MIR 119 251 -11 416 160 10 175 chrX 44558706 44558906 -118041024 - L1MC5 LINE L1 -39 7922 7756 1328 49 0 12 chrX 44558955 44559118 -118040812 - AluSg SINE Alu -139 171 11 413 221 75 55 chrX 44559127 44559326 -118040604 - L1MC5 LINE L1 -426 7535 7333 2097 79 0 7 chrX 44559853 44560130 -118039800 + AluSg SINE Alu 1 275 -35 2292 99 0 0 chrX 44560227 44560529 -118039401 - AluSq SINE Alu -11 302 1 1835 90 0 0 chrX 44560723 44560967 -118038963 + AluY SINE Alu 2 245 -66 2167 122 0 3 chrX 44561070 44561381 -118038549 - AluSg SINE Alu 0 310 1 319 319 7 37 chrX 44561973 44562108 -118037822 + MIR SINE MIR 80 210 -52 1084 259 4 8 chrX 44562158 44562409 -118037521 + MIR SINE MIR 13 262 0 285 333 56 35 chrX 44562417 44562561 -118037369 - MIR SINE MIR -64 198 52 2187 113 0 0 chrX 44566490 44566790 -118033140 + AluSq SINE Alu 1 300 -13 1715 126 12 114 chrX 44567378 44567712 -118032218 + AluJo SINE Alu 1 300 -2 1666 80 9 4 chrX 44567758 44567984 -118031946 + AluSg/x SINE Alu 85 311 -1 2185 88 0 3 chrX 44568006 44568300 -118031630 - AluY SINE Alu -18 293 1 1725 176 0 13 chrX 44568649 44568961 -118030969 - AluJb SINE Alu -4 308 1 2131 99 3 13 chrX 44568989 44569292 -118030638 + AluSx SINE Alu 2 301 -11 1164 111 6 28 chrX 44569294 44569474 -118030456 + AluSg/x SINE Alu 137 312 0 2066 122 7 0 chrX 44571791 44572085 -118027845 - AluSx SINE Alu -16 296 1 1917 122 0 39 chrX 44572088 44572399 -118027531 - AluJb SINE Alu -7 305 7 309 297 42 0 chrX 44572511 44572629 -118027301 + L2 LINE L2 2152 2274 -1040 * 586 314 47 60 chrX 44572627 44572926 -118027004 + L2 LINE L2 2957 3251 -21 222 91 0 0 chrX 44572934 44572967 -118026963 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 347 292 60 30 chrX 44573368 44573552 -118026378 + MIR SINE MIR 24 211 -51 246 208 0 0 chrX 44573615 44573663 -118026267 + L2 LINE L2 3251 3298 -15 2268 87 3 3 chrX 44575387 44575686 -118024244 - AluSx SINE Alu -13 299 1 1180 37 0 0 chrX 44575686 44575821 -118024109 - AluSq/x SINE Alu -177 135 1 313 342 0 6 chrX 44577214 44577418 -118022512 + GA-rich Low_complexity Low_complexity 1 202 0 259 293 7 40 chrX 44577968 44578095 -118021835 + GA-rich Low_complexity Low_complexity 1 131 -719 2045 98 49 0 chrX 44578095 44578380 -118021550 + AluSx SINE Alu 1 299 -13 259 293 7 40 chrX 44578380 44578392 -118021538 + GA-rich Low_complexity Low_complexity 131 142 -708 2066 113 3 0 chrX 44578392 44578683 -118021247 + AluSx SINE Alu 1 292 -20 259 293 7 40 chrX 44578683 44578848 -118021082 + GA-rich Low_complexity Low_complexity 142 850 0 355 305 19 0 chrX 44579072 44579177 -118020753 - MIR SINE MIR -107 155 49 640 106 0 0 chrX 44579179 44579264 -118020666 + AluJ/FLAM SINE Alu 2 86 -226 2089 135 0 0 chrX 44579400 44579711 -118020219 - AluSx SINE Alu -1 311 1 257 0 30 0 chrX 44579711 44579744 -118020186 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2053 105 0 31 chrX 44579744 44580038 -118019892 - AluSx SINE Alu -27 285 1 374 39 0 0 chrX 44580046 44580098 -118019832 - L1MA5 LINE L1 -2 6298 6247 1536 157 53 11 chrX 44580099 44580261 -118019669 - AluJb SINE Alu -19 293 139 305 24 24 0 chrX 44580261 44580303 -118019627 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 2299 46 0 3 chrX 44580303 44580585 -118019345 - AluY SINE Alu -30 281 1 1536 157 53 11 chrX 44580585 44580702 -118019228 - AluJb SINE Alu -172 140 1 2011 145 0 3 chrX 44581197 44581501 -118018429 - AluJb SINE Alu -9 303 1 821 94 34 0 chrX 44581834 44581951 -118017979 - HSMAR2 DNA Mariner -319 983 863 2428 63 0 0 chrX 44581963 44582262 -118017668 - AluY SINE Alu -12 299 1 2313 72 0 3 chrX 44582263 44582555 -118017375 - AluY SINE Alu -20 291 1 1983 130 0 10 chrX 44582556 44582857 -118017073 - AluSq SINE Alu -15 298 1 437 97 0 0 chrX 44582857 44582919 -118017011 + MER4C LTR ERV1 404 465 0 904 225 49 85 chrX 44582922 44582989 -118016941 - L1MDa LINE L1 -6197 343 275 860 160 0 8 chrX 44582989 44583120 -118016810 - FLAM_A SINE Alu -1 132 3 904 225 49 85 chrX 44583120 44583381 -118016549 - L1MDa LINE L1 -6265 275 27 2340 93 0 3 chrX 44583630 44583941 -118015989 + AluSg SINE Alu 1 310 0 1806 166 0 10 chrX 44583984 44584298 -118015632 + AluJb SINE Alu 1 311 -1 677 253 16 21 chrX 44584301 44584487 -118015443 + PABL_B LTR ERV1 456 640 -27 2122 120 10 0 chrX 44584545 44584853 -118015077 + AluSx SINE Alu 1 311 -1 2204 96 0 7 chrX 44584857 44585160 -118014770 - AluSq SINE Alu -12 301 1 4843 246 21 13 chrX 44585175 44586442 -118013488 - L1MDa LINE L1 -2229 4311 3029 2173 125 0 0 chrX 44586442 44586745 -118013185 - AluSx SINE Alu -9 303 1 4843 246 21 13 chrX 44586745 44586967 -118012963 - L1MDa LINE L1 -3511 3029 2810 2121 90 3 7 chrX 44586971 44587259 -118012671 - AluSc SINE Alu -22 287 1 495 177 48 24 chrX 44587259 44587369 -118012561 - L1M2 LINE L1 -511 5780 5665 1987 104 0 11 chrX 44587369 44587649 -118012281 - AluSp SINE Alu -11 302 26 495 177 48 24 chrX 44587649 44587662 -118012268 - L1M2 LINE L1 -626 5665 5654 709 204 0 8 chrX 44587673 44587805 -118012125 - FLAM_A SINE Alu -2 131 1 2036 113 17 10 chrX 44587805 44587817 -118012113 - AluSx SINE Alu 0 312 302 208 88 0 0 chrX 44587817 44587851 -118012079 + (TTTTA)n Simple_repeat Simple_repeat 2 160 0 2036 113 17 10 chrX 44587851 44588129 -118011801 - AluSx SINE Alu -10 302 1 2133 110 0 0 chrX 44588135 44588426 -118011504 - AluSg SINE Alu -19 291 1 4322 216 52 46 chrX 44588430 44588589 -118011341 - L1MDa LINE L1 -4017 2523 2366 1243 186 22 119 chrX 44588589 44588992 -118010938 + MLT1A1 LTR MaLR 2 365 0 4322 216 52 46 chrX 44588992 44589411 -118010519 - L1MDa LINE L1 -4174 2366 1951 1711 199 21 39 chrX 44589411 44589792 -118010138 + MLT1A2 LTR MaLR 1 374 0 4322 216 52 46 chrX 44589792 44590392 -118009538 - L1MDa LINE L1 -4589 1951 1356 2149 80 26 0 chrX 44590392 44590694 -118009236 - AluSq SINE Alu -3 310 1 4322 216 52 46 chrX 44590694 44590772 -118009158 - L1MDa LINE L1 -5184 1356 1280 1803 151 3 7 chrX 44590772 44591064 -118008866 - AluJb SINE Alu -21 291 1 4322 216 52 46 chrX 44591064 44591195 -118008735 - L1MDa LINE L1 -5260 1280 1125 1722 147 0 18 chrX 44591195 44591506 -118008424 - AluJb SINE Alu 0 306 1 1973 94 3 11 chrX 44591508 44591794 -118008136 - HSMAR2 DNA Mariner -965 337 54 334 190 63 13 chrX 44591794 44591873 -118008057 + L1ME3A LINE L1 3111 3193 -2953 330 139 0 42 chrX 44591879 44591951 -118007979 - HSMAR2 DNA Mariner -1232 70 2 782 263 38 82 chrX 44591951 44592152 -118007778 + L1ME3A LINE L1 5266 5474 -688 2111 98 0 10 chrX 44592152 44592448 -118007482 - AluSx SINE Alu -19 293 1 782 263 38 82 chrX 44592448 44592582 -118007348 + L1ME3A LINE L1 5474 5581 -581 2222 115 0 0 chrX 44592582 44592894 -118007036 - AluSq SINE Alu -1 312 1 782 263 38 82 chrX 44592894 44592983 -118006947 + L1ME3A LINE L1 5581 5672 -490 32975 32 4 3 chrX 44593008 44597296 -118002634 - L1PA4 LINE L1 -2 6153 1858 2233 86 6 19 chrX 44597296 44597610 -118002320 - AluSq SINE Alu -2 311 2 32975 32 4 3 chrX 44597610 44598037 -118001893 - L1PA4 LINE L1 -4297 1858 1433 5483 57 0 0 chrX 44598036 44598718 -118001212 + L1PA4 LINE L1 746 1427 -4719 * 662 212 20 0 chrX 44598716 44598867 -118001063 + L1ME3A LINE L1 5658 5811 -359 * 265 205 45 89 chrX 44598867 44598979 -118000951 + LTR40a LTR ERVL 41 147 -372 240 312 135 28 chrX 44599066 44599281 -118000649 + LTR40a LTR ERVL 186 423 -96 360 0 0 0 chrX 44599283 44599323 -118000607 + (TG)n Simple_repeat Simple_repeat 2 41 0 1168 148 10 15 chrX 44599323 44599525 -118000405 - AluJo SINE Alu -27 285 85 458 65 32 0 chrX 44599582 44599644 -118000286 + LTR40a LTR ERVL 451 514 -5 511 199 23 30 chrX 44599650 44599781 -118000149 + L1ME3A LINE L1 5810 5939 -231 2026 133 3 13 chrX 44599791 44600106 -117999824 + AluSq SINE Alu 1 312 -1 928 151 13 0 chrX 44600183 44600342 -117999588 - FRAM SINE Alu 0 176 16 2201 97 3 3 chrX 44600440 44600740 -117999190 - AluSc SINE Alu -9 300 1 2505 48 0 6 chrX 44600867 44601180 -117998750 - AluY SINE Alu 0 311 1 294 163 0 0 chrX 44601299 44601348 -117998582 - MER90 LTR ERV1 -3 611 563 1327 71 0 0 chrX 44601355 44601523 -117998407 - AluSg/x SINE Alu -11 301 134 2079 115 0 7 chrX 44601523 44601828 -117998102 - AluSq SINE Alu -10 303 1 477 207 0 11 chrX 44601831 44601918 -117998012 - MER90 LTR ERV1 -50 564 479 1423 163 0 4 chrX 44601920 44602159 -117997771 + AluJo SINE Alu 1 238 -74 273 109 0 0 chrX 44602163 44602209 -117997721 + (A)n Simple_repeat Simple_repeat 1 46 0 2127 113 3 10 chrX 44602211 44602521 -117997409 + AluSg SINE Alu 1 308 -2 2302 207 38 4 chrX 44602535 44603004 -117996926 - MER90 LTR ERV1 -129 485 1 780 164 23 64 chrX 44603033 44603204 -117996726 - LTR52 LTR ERVL -11 410 247 1769 152 14 3 chrX 44603207 44603504 -117996426 - AluJb SINE Alu -12 300 1 2310 173 29 62 chrX 44603505 44603574 -117996356 - L1 LINE L1 -768 5378 5308 2081 118 0 3 chrX 44603574 44603870 -117996060 + AluSx SINE Alu 1 295 -17 2310 173 29 62 chrX 44603870 44604199 -117995731 - L1 LINE L1 -838 5308 5000 2057 111 3 0 chrX 44604199 44604487 -117995443 - AluSx SINE Alu -23 289 1 2310 173 29 62 chrX 44604487 44604637 -117995293 - L1 LINE L1 -1146 5000 4847 1032 144 39 62 chrX 44604679 44604729 -117995201 - MSTD LTR MaLR 0 396 346 2208 110 0 0 chrX 44604729 44605028 -117994902 - AluSg SINE Alu -11 299 1 1032 144 39 62 chrX 44605028 44605185 -117994745 - MSTD LTR MaLR -50 346 194 1150 99 93 0 chrX 44605185 44605346 -117994584 + THE1B LTR MaLR 1 176 -188 1898 180 80 34 chrX 44605349 44605788 -117994142 - LTR2B LTR ERV1 0 490 32 54137 54 20 19 chrX 44605807 44610258 -117989672 - Harlequin LTR ERV1 0 6896 2429 2212 50 53 0 chrX 44610258 44610540 -117989390 - AluY SINE Alu -14 297 1 54137 54 20 19 chrX 44610540 44612973 -117986957 - Harlequin LTR ERV1 -4467 2429 1 1919 177 98 30 chrX 44612973 44613403 -117986527 - LTR2B LTR ERV1 0 490 32 11231 91 42 1 chrX 44613452 44614970 -117984960 + THE1B-int LTR MaLR 1 1580 0 2412 99 73 14 chrX 44614970 44615314 -117984616 + THE1B LTR MaLR 1 364 0 865 153 53 0 chrX 44615335 44615485 -117984445 - MSTD LTR MaLR -237 159 2 2618 205 81 39 chrX 44615486 44615702 -117984228 - MSTD-int LTR MaLR 0 1735 1530 2086 117 0 0 chrX 44615702 44615993 -117983937 + AluSx SINE Alu 1 291 -21 2618 205 81 39 chrX 44615993 44616395 -117983535 - MSTD-int LTR MaLR -205 1530 1091 824 159 0 7 chrX 44616385 44616536 -117983394 - L1 LINE L1 -1431 4715 4566 * 1563 164 3 33 chrX 44616548 44616847 -117983083 - AluJb SINE Alu -22 290 1 865 118 0 0 chrX 44616849 44616976 -117982954 - AluJb SINE Alu -180 132 6 1373 172 15 0 chrX 44616981 44617254 -117982676 - L1 LINE L1 -1567 4579 4303 3422 121 28 90 chrX 44617255 44617423 -117982507 + L1MA10 LINE L1 5666 5843 -491 2048 122 3 13 chrX 44617423 44617735 -117982195 + AluSx SINE Alu 1 309 -3 3422 121 28 90 chrX 44617735 44618279 -117981651 + L1MA10 LINE L1 5843 6334 0 1829 164 0 3 chrX 44618290 44618600 -117981330 + AluSx SINE Alu 1 309 -3 2179 92 0 32 chrX 44618656 44618970 -117980960 + AluSq SINE Alu 1 304 -9 1585 171 0 38 chrX 44618970 44619261 -117980669 - AluSx SINE Alu -31 281 1 1929 128 0 10 chrX 44619811 44620108 -117979822 - AluSx SINE Alu -18 294 1 979 128 34 0 chrX 44620113 44620262 -117979668 - AluJ SINE Alu -17 295 142 1734 145 3 7 chrX 44620375 44620665 -117979265 + AluJb SINE Alu 1 289 -23 876 137 15 0 chrX 44620776 44620907 -117979023 - AluJ SINE Alu -169 133 1 2362 78 3 0 chrX 44621146 44621455 -117978475 - AluSp SINE Alu -3 310 1 1522 138 7 39 chrX 44621729 44622011 -117977919 - AluJb SINE Alu -39 273 1 739 139 25 0 chrX 44622037 44622159 -117977771 - L1MB1 LINE L1 -1 6167 6043 2089 110 6 31 chrX 44622167 44622486 -117977444 - AluSx SINE Alu -1 311 1 2104 109 3 3 chrX 44622548 44622842 -117977088 + AluSx SINE Alu 1 294 -18 1311 84 0 0 chrX 44622842 44623009 -117976921 + AluSp SINE Alu 134 300 -13 975 136 0 13 chrX 44623012 44623166 -117976764 - L1MB1 LINE L1 -159 6009 5858 312 265 10 69 chrX 44623315 44623417 -117976513 - MER89-int LTR ERV1 -2536 2111 2016 2086 114 7 0 chrX 44623522 44623830 -117976100 - AluSx SINE Alu -2 310 1 844 108 46 0 chrX 44623830 44623960 -117975970 - AluSq/x SINE Alu -176 136 1 2508 47 0 0 chrX 44624146 44624444 -117975486 + AluY SINE Alu 1 298 -13 234 62 0 0 chrX 44624522 44624554 -117975376 + (TC)n Simple_repeat Simple_repeat 2 33 0 276 30 0 0 chrX 44624561 44624594 -117975336 + (TG)n Simple_repeat Simple_repeat 2 34 0 2048 113 0 7 chrX 44624595 44624888 -117975042 - AluSc SINE Alu -18 291 1 1782 86 0 0 chrX 44624919 44625152 -117974778 - AluSx SINE Alu -78 234 2 2644 150 33 2 chrX 44625152 44625611 -117974319 - L1MB3 LINE L1 -83 6100 5628 21 36 0 0 chrX 44625627 44625655 -117974275 + AT_rich Low_complexity Low_complexity 1 28 0 1759 138 0 4 chrX 44625656 44625931 -117973999 + AluSx SINE Alu 1 274 -38 207 0 0 0 chrX 44625939 44625962 -117973968 + (TAA)n Simple_repeat Simple_repeat 2 24 0 820 167 0 0 chrX 44626007 44626133 -117973797 - FLAM_C SINE Alu -13 130 5 253 304 98 21 chrX 44626147 44626341 -117973589 - MER89-int LTR ERV1 -3190 3611 3403 216 0 0 0 chrX 44626803 44626827 -117973103 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 826 161 20 7 chrX 44626828 44626977 -117972953 - AluJb SINE Alu -25 287 137 1839 132 7 14 chrX 44627193 44627488 -117972442 + AluSx SINE Alu 3 295 -17 2131 103 0 0 chrX 44627523 44627834 -117972096 + AluSx SINE Alu 1 312 0 1814 147 0 3 chrX 44628063 44628349 -117971581 + AluSx SINE Alu 1 285 -27 22 56 0 0 chrX 44628421 44628457 -117971473 + AT_rich Low_complexity Low_complexity 1 36 0 2181 81 3 0 chrX 44628650 44628935 -117970995 - AluSc SINE Alu -23 286 1 277 120 80 0 chrX 44628941 44628991 -117970939 - L1MA3 LINE L1 0 6305 6252 * 997 128 6 3 chrX 44628974 44628991 -117970939 - L1MB7 LINE L1 -336 5844 5829 1761 108 93 0 chrX 44628991 44629260 -117970670 - AluSx SINE Alu -18 294 1 997 128 6 3 chrX 44629260 44629419 -117970511 - L1MB7 LINE L1 -351 5829 5671 1989 129 3 3 chrX 44629441 44629751 -117970179 + AluJb SINE Alu 1 310 -2 293 302 9 9 chrX 44629842 44629958 -117969972 - L1M4 LINE L1 -1538 4608 4493 2188 98 0 7 chrX 44629962 44630259 -117969671 - AluSx SINE Alu -17 295 1 269 250 129 35 chrX 44630276 44630392 -117969538 - HAL1b LINE L1 -34 1314 1188 205 167 0 0 chrX 44630470 44630506 -117969424 + (TATG)n Simple_repeat Simple_repeat 1 36 0 219 291 9 27 chrX 44630516 44630626 -117969304 + (CAGAGA)n Simple_repeat Simple_repeat 4 111 0 1734 144 7 3 chrX 44630692 44630990 -117968940 + AluSx SINE Alu 1 299 -13 210 267 35 43 chrX 44631039 44631155 -117968775 - MIR SINE MIR -71 191 77 21 0 0 0 chrX 44631632 44631653 -117968277 + GC_rich Low_complexity Low_complexity 1 21 0 282 29 0 0 chrX 44632289 44632324 -117967606 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 288 0 0 0 chrX 44632323 44632355 -117967575 + (TG)n Simple_repeat Simple_repeat 1 32 0 248 180 0 0 chrX 44633080 44633130 -117966800 - L1ME3 LINE L1 -204 5958 5909 1156 264 74 58 chrX 44633236 44633732 -117966198 - L1ME3 LINE L1 -286 5884 5375 1550 179 16 13 chrX 44633732 44634039 -117965891 - AluJo SINE Alu -4 308 1 1156 264 74 58 chrX 44634039 44634160 -117965770 - L1ME3 LINE L1 -795 5375 5257 338 228 59 50 chrX 44634362 44634463 -117965467 + L1MC/D LINE L1 5640 5741 -2067 228 253 0 46 chrX 44635099 44635186 -117964744 + C-rich Low_complexity Low_complexity 1 83 0 302 176 20 0 chrX 44636102 44636153 -117963777 + MER115 DNA AcHobo 8 59 -634 866 253 58 65 chrX 44636265 44636707 -117963223 + MER115 DNA AcHobo 207 685 -8 327 332 199 18 chrX 44636774 44637000 -117962930 + L2 LINE L2 3006 3313 0 951 170 12 12 chrX 44638294 44638465 -117961465 - L1MB8 LINE L1 -6 6172 6002 313 228 51 0 chrX 44638473 44638552 -117961378 + L2 LINE L2 3209 3291 -22 189 258 0 118 chrX 44638547 44638640 -117961290 - L2 LINE L2 -89 3224 3143 * 319 225 121 55 chrX 44638665 44638807 -117961123 - L2 LINE L2 0 3313 3155 2234 78 3 10 chrX 44638807 44639113 -117960817 + AluSq SINE Alu 1 304 -9 319 225 121 55 chrX 44639113 44639152 -117960778 - L2 LINE L2 -158 3155 3120 338 215 181 62 chrX 44639196 44639340 -117960590 - L2 LINE L2 0 3313 3153 262 209 15 15 chrX 44640717 44640784 -117959146 + C-rich Low_complexity Low_complexity 3 69 0 311 247 139 77 chrX 44641134 44641246 -117958684 + MLT1J LTR MaLR 107 237 -274 2081 123 7 0 chrX 44641246 44641547 -117958383 + AluSq SINE Alu 3 305 -8 311 247 139 77 chrX 44641547 44641628 -117958302 + MLT1J LTR MaLR 237 312 -199 337 250 95 0 chrX 44644760 44644844 -117955086 - MIR SINE MIR 0 262 171 528 259 108 27 chrX 44645039 44645224 -117954706 - MIR SINE MIR -62 200 1 344 247 89 62 chrX 44645240 44645327 -117954603 + MIR SINE MIR 71 154 -108 2273 92 0 16 chrX 44645327 44645643 -117954287 + AluSx SINE Alu 1 311 -1 1916 110 59 7 chrX 44645647 44645937 -117953993 + AluSg SINE Alu 4 308 -2 344 247 89 62 chrX 44645937 44645990 -117953940 + MIR SINE MIR 156 220 -42 1939 134 0 3 chrX 44645997 44646313 -117953617 + AluSx SINE Alu 1 312 0 198 196 0 22 chrX 44646357 44646403 -117953527 - MIR SINE MIR -107 155 111 881 243 16 51 chrX 44646481 44646736 -117953194 + MIR SINE MIR 17 262 0 213 258 21 81 chrX 44647183 44647298 -117952632 + (CAGAGA)n Simple_repeat Simple_repeat 2 103 -73 2266 78 10 0 chrX 44647298 44647591 -117952339 + AluY SINE Alu 1 296 -15 213 258 21 81 chrX 44647591 44647661 -117952269 + (CAGAGA)n Simple_repeat Simple_repeat 103 176 0 2349 77 0 10 chrX 44649856 44650168 -117949762 - AluY SINE Alu 0 311 3 806 189 88 0 chrX 44650171 44650319 -117949611 - AluJb SINE Alu -17 295 135 402 276 50 14 chrX 44651810 44652013 -117947917 - MIR SINE MIR 0 262 51 469 324 0 0 chrX 44652788 44652967 -117946963 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 2266 100 0 3 chrX 44653929 44654239 -117945691 + AluSx SINE Alu 1 309 -3 242 325 31 43 chrX 44654385 44654548 -117945382 + HAL1 LINE L1 3 163 -2344 689 233 5 15 chrX 44655072 44655278 -117944652 + L1MC5 LINE L1 7645 7848 -113 467 245 69 69 chrX 44655288 44655476 -117944454 + L1M4 LINE L1 3074 3261 -2885 370 272 126 46 chrX 44655675 44655824 -117944106 + HAL1 LINE L1 816 952 -1555 2241 96 0 0 chrX 44655824 44656116 -117943814 - AluSx SINE Alu -20 292 1 370 272 126 46 chrX 44656116 44656315 -117943615 + HAL1 LINE L1 952 1192 -1315 1395 141 0 9 chrX 44656315 44656561 -117943369 + AluJb SINE Alu 87 312 0 509 266 181 16 chrX 44656563 44656762 -117943168 + HAL1 LINE L1 1197 1362 -1145 1865 159 3 13 chrX 44656762 44657070 -117942860 + AluJo SINE Alu 1 305 -7 509 266 181 16 chrX 44657070 44657174 -117942756 + HAL1 LINE L1 1362 1550 -957 1520 132 0 60 chrX 44657264 44657322 -117942608 + MER46A DNA MER2_type 1 61 -2670 2094 96 17 7 chrX 44657322 44657615 -117942315 - AluSx SINE Alu -16 296 1 1520 132 0 60 chrX 44657615 44657807 -117942123 + MER46A DNA MER2_type 61 236 0 864 301 88 22 chrX 44657849 44658394 -117941536 + L1MC4a LINE L1 5532 6103 -18 358 292 140 0 chrX 44658538 44658716 -117941214 + MIR SINE MIR 49 251 -11 2337 81 0 3 chrX 44659326 44659634 -117940296 + AluSc SINE Alu 1 307 -2 25 0 0 0 chrX 44659743 44659768 -117940162 + AT_rich Low_complexity Low_complexity 1 25 0 401 290 143 18 chrX 44659778 44659995 -117939935 + L1MC4a LINE L1 5694 5937 -1871 849 203 6 11 chrX 44660014 44660191 -117939739 - MER104 DNA MER2_type -4 176 1 204 330 51 66 chrX 44660976 44661173 -117938757 + L2 LINE L2 2920 3113 -159 328 308 135 26 chrX 44661208 44661364 -117938566 - MIR SINE MIR -1 261 89 1146 270 88 31 chrX 44661849 44662532 -117937398 + L2 LINE L2 2550 3293 -20 888 288 160 19 chrX 44662656 44662949 -117936981 - L2 LINE L2 -245 3068 2818 2182 117 3 3 chrX 44662949 44663258 -117936672 - AluSq SINE Alu -4 309 1 888 288 160 19 chrX 44663258 44663468 -117936462 - L2 LINE L2 -495 2818 2502 266 333 69 87 chrX 44663499 44663775 -117936155 + L2 LINE L2 3001 3271 -1 297 229 0 0 chrX 44666002 44666063 -117933867 - MIR SINE MIR -84 178 118 424 193 12 0 chrX 44666073 44666156 -117933774 + MIR SINE MIR 78 161 -101 640 112 128 40 chrX 44666737 44666862 -117933068 - MER58C DNA MER1_type 0 215 80 1873 144 3 23 chrX 44667212 44667518 -117932412 - AluJb SINE Alu -2 310 11 1856 151 3 16 chrX 44667683 44667987 -117931943 + AluJb SINE Alu 1 300 -12 1904 100 89 0 chrX 44667992 44668273 -117931657 + AluSx SINE Alu 1 306 -6 1404 234 138 13 chrX 44668300 44668698 -117931232 - MLT1J2 LTR MaLR -2 448 1 1428 154 70 32 chrX 44668720 44669032 -117930898 + MER33 DNA MER1_type 1 324 0 2423 113 12 12 chrX 44669986 44670323 -117929607 - MER1B DNA MER1_type 0 337 1 259 390 37 5 chrX 44671482 44671672 -117928258 + MIR SINE MIR 58 253 -9 184 299 134 0 chrX 44671688 44671785 -117928145 + MIR SINE MIR 14 123 -139 463 294 5 54 chrX 44673576 44673760 -117926170 + G-rich Low_complexity Low_complexity 3 177 0 610 182 203 14 chrX 44674183 44674331 -117925599 + MER5B DNA MER1_type 3 178 0 518 283 17 11 chrX 44676081 44676258 -117923672 + CT-rich Low_complexity Low_complexity 3 180 0 241 240 15 15 chrX 44676334 44676612 -117923318 + CT-rich Low_complexity Low_complexity 1 278 0 1823 115 21 7 chrX 44676681 44676967 -117922963 - AluJb SINE Alu -22 290 1 380 357 0 27 chrX 44676967 44677152 -117922778 + C-rich Low_complexity Low_complexity 1 180 0 2306 103 0 0 chrX 44677803 44678113 -117921817 - AluSx SINE Alu -2 310 1 365 308 13 6 chrX 44678143 44678299 -117921631 + CT-rich Low_complexity Low_complexity 2 158 0 300 263 38 31 chrX 44678645 44678805 -117921125 + (TCTCTG)n Simple_repeat Simple_repeat 2 162 0 211 238 9 9 chrX 44678818 44678923 -117921007 + CT-rich Low_complexity Low_complexity 2 106 0 295 78 39 0 chrX 44680587 44680638 -117919292 + CT-rich Low_complexity Low_complexity 1 53 0 225 186 0 0 chrX 44680969 44681012 -117918918 - MIR SINE MIR -114 148 106 478 335 0 0 chrX 44681344 44681523 -117918407 + GA-rich Low_complexity Low_complexity 2 180 0 303 273 0 36 chrX 44681532 44681697 -117918233 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 201 277 0 0 chrX 44681992 44682039 -117917891 - MIR3 SINE MIR -53 155 109 * 217 331 41 62 chrX 44682021 44682166 -117917764 + MIR3 SINE MIR 11 152 -56 193 310 56 14 chrX 44682197 44682268 -117917662 - L2 LINE L2 -19 3253 3180 429 325 36 52 chrX 44682291 44682540 -117917390 + MIR SINE MIR 13 257 -5 208 288 31 6 chrX 44682613 44682704 -117917226 + (TAA)n Simple_repeat Simple_repeat 3 101 -68 2272 114 17 11 chrX 44682704 44683064 -117916866 - L1MA6 LINE L1 -4 6296 5935 208 288 31 6 chrX 44683064 44683135 -117916795 + (TAA)n Simple_repeat Simple_repeat 101 169 0 1070 171 29 15 chrX 44683188 44683393 -117916537 - AluJo SINE Alu -23 289 82 213 275 76 76 chrX 44683425 44683556 -117916374 - MIR SINE MIR 0 262 132 322 224 56 65 chrX 44683593 44683700 -117916230 + MIR SINE MIR 40 145 -63 571 137 121 40 chrX 44684735 44684859 -117915071 - L1ME3 LINE L1 -215 5947 5814 3295 151 58 80 chrX 44684870 44685289 -117914641 - L1MB7 LINE L1 -16 6168 5741 1815 128 42 0 chrX 44685289 44685577 -117914353 + AluJo SINE Alu 5 304 -8 3295 151 58 80 chrX 44685577 44685826 -117914104 - L1MB7 LINE L1 -443 5741 5488 968 77 32 0 chrX 44685826 44685981 -117913949 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 1529 174 22 14 chrX 44685988 44686264 -117913666 - AluJb SINE Alu -34 278 1 3295 151 58 80 chrX 44686264 44686407 -117913523 - L1MB7 LINE L1 -702 5482 5366 1809 111 0 0 chrX 44686408 44686660 -117913270 - AluSx SINE Alu -2 310 59 229 290 29 0 chrX 44886894 44886963 -117712967 + CT-rich Low_complexity Low_complexity 3 73 0 208 325 17 103 chrX 44888624 44888741 -117711189 + L2 LINE L2 3164 3270 -2 189 0 0 0 chrX 44888873 44888894 -117711036 + (CTTTG)n Simple_repeat Simple_repeat 2 22 0 180 231 11 165 chrX 44889033 44889124 -117710806 - L2 LINE L2 -24 3248 3172 670 242 13 7 chrX 44889266 44889415 -117710515 - MIR SINE MIR -86 176 27 253 306 64 19 chrX 44890099 44890233 -117709697 + MIR SINE MIR 4 146 -62 515 328 62 31 chrX 44890794 44891151 -117708779 + L2 LINE L2 1635 2002 -1312 5890 124 38 1 chrX 44891200 44892169 -117707761 + L1MA4 LINE L1 5296 6300 0 2183 116 3 0 chrX 44892179 44892473 -117707457 - AluSx SINE Alu -17 295 1 382 348 185 15 chrX 44892483 44892894 -117707036 + L2 LINE L2 2018 2498 -816 240 278 133 0 chrX 44893214 44893304 -117706626 + MIR SINE MIR 148 249 -13 280 315 8 55 chrX 44894244 44894371 -117705559 + L2 LINE L2 2562 2682 -632 2291 104 0 0 chrX 44894784 44895073 -117704857 - AluSx SINE Alu -23 289 1 306 266 93 63 chrX 44895304 44895541 -117704389 + L1 LINE L1 3150 3393 -2753 261 277 69 8 chrX 44895801 44895931 -117703999 + L1 LINE L1 3635 3772 -2374 600 164 79 0 chrX 44895954 44896106 -117703824 - LTR37A LTR ERV1 0 426 263 207 362 27 27 chrX 44896379 44896528 -117703402 + L2 LINE L2 470 618 -2696 1072 118 43 5 chrX 44896537 44896724 -117703206 - L1MA5A LINE L1 -2 6295 6102 313 304 109 0 chrX 44896964 44897056 -117702874 - L2 LINE L2 -24 3248 3147 292 213 107 0 chrX 44897063 44897138 -117702792 - MER58B DNA MER1_type -15 326 244 2306 96 54 0 chrX 44897138 44897491 -117702439 - L1MA5A LINE L1 -257 6040 5669 200 188 0 0 chrX 44897491 44897523 -117702407 + (CATA)n Simple_repeat Simple_repeat 3 34 0 857 180 133 0 chrX 44897523 44897734 -117702196 + MER58B DNA MER1_type 88 326 -15 313 304 109 0 chrX 44897742 44897834 -117702096 + L2 LINE L2 3147 3248 -24 24 0 0 0 chrX 44898318 44898342 -117701588 + AT_rich Low_complexity Low_complexity 1 24 0 846 216 4 122 chrX 44898342 44898596 -117701334 + MER58A DNA MER1_type 1 224 0 402 284 26 26 chrX 44898847 44898963 -117700967 - L2 LINE L2 -1 3271 3156 355 298 36 42 chrX 44898952 44899120 -117700810 + MIR SINE MIR 34 200 -62 * 21 36 0 0 chrX 44899139 44899167 -117700763 + AT_rich Low_complexity Low_complexity 1 28 0 359 217 87 70 chrX 44899171 44899286 -117700644 - L2 LINE L2 -6 3307 3191 2224 55 0 28 chrX 44899423 44899737 -117700193 + AluY SINE Alu 1 306 0 484 319 37 16 chrX 44899963 44900151 -117699779 - MIR3 SINE MIR -1 207 16 218 335 65 49 chrX 44900956 44901201 -117698729 + L2 LINE L2 1540 1788 -1526 1881 210 59 16 chrX 44901238 44901681 -117698249 - MLT1C LTR MaLR 0 467 6 659 319 136 53 chrX 44901686 44902522 -117697408 + L2 LINE L2 1954 2928 -344 3322 55 18 35 chrX 44902522 44902974 -117696956 - MLT2A1 LTR ERVL 0 444 1 659 319 136 53 chrX 44902974 44903351 -117696579 + L2 LINE L2 2928 3272 0 190 217 0 22 chrX 44903464 44903510 -117696420 - L2 LINE L2 -829 2485 2441 223 353 0 0 chrX 44903552 44903620 -117696310 - MIR SINE MIR -1 261 194 483 332 37 21 chrX 44903634 44903875 -117696055 - L2 LINE L2 -946 2368 2124 1778 286 55 65 chrX 44903909 44905069 -117694861 - L2 LINE L2 0 3313 2170 1031 215 6 57 chrX 44905069 44905385 -117694545 + L1MC4 LINE L1 7743 8042 0 1554 222 114 134 chrX 44905505 44905960 -117693970 - L2 LINE L2 -1141 2173 1743 1550 106 13 0 chrX 44905960 44906196 -117693734 + L1MA4 LINE L1 6056 6294 -6 1554 222 114 134 chrX 44906196 44906641 -117693289 - L2 LINE L2 -1571 1743 1291 430 348 36 36 chrX 44906641 44906862 -117693068 - L2 LINE L2 -1285 2029 1809 183 323 113 0 chrX 44906915 44906977 -117692953 + L2 LINE L2 3137 3205 -67 250 291 64 18 chrX 44907940 44908050 -117691880 + L2 LINE L2 3199 3313 0 215 353 41 33 chrX 44909110 44909232 -117690698 + L3b LINE CR1 1106 1228 -355 293 323 108 48 chrX 44909609 44909776 -117690154 + L3b LINE CR1 1272 1448 -135 492 291 71 95 chrX 44909990 44910410 -117689520 + L2 LINE L2 2150 2559 -755 1382 68 4 112 chrX 44910411 44910662 -117689268 - L1PA13 LINE L1 -11 6152 5929 372 344 151 19 chrX 44910675 44910934 -117688996 + L2 LINE L2 2894 3186 -86 2686 225 52 41 chrX 44911012 44912005 -117687925 - L1M4 LINE L1 -999 5541 4538 * 5945 167 43 15 chrX 44911981 44913342 -117686588 - L1MDa LINE L1 -3772 2768 1366 15749 106 17 31 chrX 44913346 44914807 -117685123 + Tigger1 DNA MER2_type 1 1481 -937 6744 56 0 0 chrX 44914807 44915648 -117684282 + L1PA7 LINE L1 5314 6154 0 15749 106 17 31 chrX 44915648 44916157 -117683773 + Tigger1 DNA MER2_type 1481 1933 -485 1760 139 19 4 chrX 44916157 44916424 -117683506 + AluJb SINE Alu 1 271 -41 15749 106 17 31 chrX 44916424 44916904 -117683026 + Tigger1 DNA MER2_type 1933 2418 0 4960 191 103 11 chrX 44916905 44918026 -117681904 - L1MDa LINE L1 -5178 1362 139 397 183 59 0 chrX 44918062 44918164 -117681766 - L1M LINE L1 -844 5302 5213 618 160 38 0 chrX 44918189 44918295 -117681635 - L1MDa LINE L1 -6415 125 16 34 24 0 0 chrX 44918352 44918393 -117681537 + AT_rich Low_complexity Low_complexity 1 41 0 358 280 9 37 chrX 44919568 44919675 -117680255 - MIR SINE MIR -133 129 26 438 281 12 47 chrX 44919962 44920133 -117679797 - MIR SINE MIR -21 241 77 347 17 67 0 chrX 44920803 44920863 -117679067 + (TG)n Simple_repeat Simple_repeat 2 65 0 199 208 19 38 chrX 44921796 44921849 -117678081 - L2 LINE L2 -1 3312 3261 183 241 35 52 chrX 44922194 44922252 -117677678 - L2 LINE L2 -541 2773 2717 215 249 171 69 chrX 44922720 44922937 -117676993 + L2 LINE L2 1686 1924 -1390 427 238 232 0 chrX 44923022 44923173 -117676757 + MIR SINE MIR 71 256 -6 2214 106 0 7 chrX 44923245 44923538 -117676392 - AluSg SINE Alu -18 292 2 557 249 158 18 chrX 44923628 44923793 -117676137 - MER5A DNA MER1_type 0 189 2 325 281 85 55 chrX 44923803 44924002 -117675928 + L2 LINE L2 2160 2364 -950 1884 120 74 0 chrX 44924260 44924543 -117675387 + AluSx SINE Alu 1 304 -8 455 292 77 44 chrX 44924568 44924842 -117675088 + L1MC4a LINE L1 5114 5396 -750 1616 179 7 11 chrX 44924846 44925125 -117674805 + AluJo SINE Alu 6 283 -29 658 99 36 0 chrX 44925133 44925244 -117674686 + GA-rich Low_complexity Low_complexity 3 117 0 270 263 53 59 chrX 44925246 44925398 -117674532 + L1MC4a LINE L1 5386 5536 -2272 545 149 113 13 chrX 44925399 44925513 -117674417 + MER5A DNA MER1_type 9 116 -62 629 318 82 16 chrX 44925548 44925926 -117674004 + L1MC4a LINE L1 5522 5924 -1884 651 215 76 0 chrX 44925931 44926075 -117673855 - MIR SINE MIR -106 156 2 291 325 146 35 chrX 44927099 44927468 -117672462 - L2 LINE L2 -474 2840 2431 1523 161 14 135 chrX 44927504 44927919 -117672011 - MLT1A1 LTR MaLR 0 365 1 8643 145 21 15 chrX 44928169 44930105 -117669825 + L1MA9 LINE L1 3818 5768 -523 206 94 47 35 chrX 44930179 44930264 -117669666 + (TA)n Simple_repeat Simple_repeat 1 86 0 1040 100 59 0 chrX 44930269 44930439 -117669491 + L1MA9 LINE L1 5783 5962 -329 3498 114 17 17 chrX 44930439 44930970 -117668960 + L1PA16 LINE L1 5625 6157 -9 26 0 0 0 chrX 44930970 44930996 -117668934 + AT_rich Low_complexity Low_complexity 1 26 0 1841 148 45 11 chrX 44930998 44931355 -117668575 + L1MA9 LINE L1 5937 6305 -7 824 161 86 11 chrX 44931782 44931826 -117668104 - MER5A DNA MER1_type -1 188 149 11946 74 14 0 chrX 44931826 44934175 -117665755 + L1PA7 LINE L1 3784 6154 0 824 161 86 11 chrX 44934175 44934304 -117665626 - MER5A DNA MER1_type -40 149 2 195 69 0 0 chrX 44934645 44934674 -117665256 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2148 97 3 33 chrX 44935100 44935399 -117664531 + AluSc SINE Alu 1 290 -19 1063 263 54 48 chrX 44935401 44935918 -117664012 - L1ME4a LINE L1 -3 6118 5599 596 129 11 0 chrX 44935916 44936009 -117663921 - L1MB7 LINE L1 -23 6161 6068 * 556 176 49 0 chrX 44936017 44936119 -117663811 - U6 snRNA snRNA 0 107 1 347 283 127 12 chrX 44936120 44936286 -117663644 - L1ME4a LINE L1 -507 5614 5430 864 301 73 15 chrX 44937477 44937885 -117662045 + L2 LINE L2 2472 2903 -411 450 0 0 0 chrX 44939180 44939230 -117660700 + (CA)n Simple_repeat Simple_repeat 2 51 0 372 254 261 0 chrX 44940526 44940664 -117659266 + MER5A DNA MER1_type 9 182 -7 189 170 21 64 chrX 44940812 44940859 -117659071 - L2 LINE L2 -12 3301 3257 * 367 209 116 0 chrX 44940854 44940940 -117658990 - MIR SINE MIR -67 141 46 374 269 30 16 chrX 44941356 44941507 -117658423 - MIR3 SINE MIR -10 198 45 684 255 35 20 chrX 44942883 44942993 -117656937 + MIR SINE MIR 48 164 -98 1863 151 0 41 chrX 44942993 44943310 -117656620 + AluJo SINE Alu 1 304 -8 684 255 35 20 chrX 44943310 44943399 -117656531 + MIR SINE MIR 164 250 -12 316 327 46 13 chrX 44943427 44943580 -117656350 - MIR SINE MIR -27 235 78 2284 101 3 3 chrX 44943846 44944144 -117655786 + AluSx SINE Alu 1 298 -14 528 291 81 5 chrX 44944281 44944491 -117655439 - MIR SINE MIR -1 261 36 382 255 41 0 chrX 44944624 44944722 -117655208 - L2 LINE L2 -226 3046 2945 711 238 72 5 chrX 44944753 44944946 -117654984 - MIR SINE MIR -34 228 23 196 291 73 0 chrX 44945533 44945588 -117654342 + L2 LINE L2 3189 3247 -25 187 341 68 0 chrX 44946134 44946222 -117653708 + L2 LINE L2 3201 3294 -19 289 251 0 73 chrX 44946296 44946487 -117653443 + CT-rich Low_complexity Low_complexity 1 177 0 410 328 54 39 chrX 44946797 44947001 -117652929 + L2 LINE L2 3063 3269 -3 443 211 119 0 chrX 44947157 44947266 -117652664 - L2 LINE L2 0 3313 3192 244 244 39 13 chrX 44947703 44947781 -117652149 + MIR SINE MIR 34 113 -95 564 261 67 10 chrX 44947791 44947986 -117651944 + L2 LINE L2 1993 2198 -1116 365 256 17 0 chrX 44948788 44948905 -117651025 - MIR SINE MIR -12 250 132 307 281 41 8 chrX 44948925 44949046 -117650884 + MIR SINE MIR 29 153 -109 1323 156 0 0 chrX 44949052 44949263 -117650667 + L1PA16 LINE L1 5956 6166 0 194 225 0 0 chrX 44949294 44949334 -117650596 + L2 LINE L2 3214 3253 -19 218 287 11 144 chrX 44949368 44949472 -117650458 + MIR3 SINE MIR 43 115 -93 797 184 60 38 chrX 44949472 44949657 -117650273 + MER5A DNA MER1_type 1 189 0 218 287 11 144 chrX 44949657 44949733 -117650197 + MIR3 SINE MIR 115 199 -9 24 32 0 0 chrX 44952641 44952672 -117647258 + AT_rich Low_complexity Low_complexity 1 31 0 222 328 35 9 chrX 44952944 44953060 -117646870 + MIR SINE MIR 117 235 -27 845 197 43 107 chrX 44953486 44953786 -117646144 + L1ME2 LINE L1 5874 6154 -10 308 125 18 0 chrX 44953865 44953921 -117646009 - L1M4 LINE L1 -1685 4461 4405 3940 207 60 30 chrX 44953958 44954997 -117644933 - L1M4 LINE L1 -1721 4425 3356 358 185 64 32 chrX 44955045 44955191 -117644739 + L1MC4 LINE L1 7783 8037 -5 549 257 180 14 chrX 44955199 44955421 -117644509 + MIR SINE MIR 3 261 -1 397 212 116 48 chrX 44956030 44956176 -117643754 - MIR SINE MIR -54 208 53 673 297 88 0 chrX 44956183 44956422 -117643508 - MIR SINE MIR -1 261 2 187 194 0 0 chrX 44956926 44956962 -117642968 - L2 LINE L2 -27 3245 3210 277 333 53 0 chrX 44958367 44958481 -117641449 + L2 LINE L2 3181 3300 -13 605 279 88 9 chrX 44958545 44958760 -117641170 - MIR SINE MIR 0 262 31 221 203 0 34 chrX 44959011 44959070 -117640860 - MIR SINE MIR -57 205 149 412 169 39 130 chrX 44959106 44959260 -117640670 - MER5A DNA MER1_type -48 141 2 265 279 0 0 chrX 44959282 44959350 -117640580 - MIR SINE MIR -147 115 48 733 212 36 84 chrX 44959565 44959815 -117640115 + MIR SINE MIR 15 252 -10 916 281 103 48 chrX 44960167 44960894 -117639036 - L1ME4a LINE L1 -28 6093 5327 1081 171 0 11 chrX 44960976 44961152 -117638778 + FRAM SINE Alu 1 171 -5 3137 173 50 8 chrX 44961605 44962208 -117637722 - L1MB8 LINE L1 -37 6141 5514 2295 105 0 0 chrX 44962270 44962566 -117637364 + AluSx SINE Alu 1 296 -16 1136 132 22 0 chrX 44962662 44962844 -117637086 + MER5A DNA MER1_type 2 187 -2 337 245 41 0 chrX 44963460 44963558 -117636372 - MIR SINE MIR -56 206 105 677 246 22 11 chrX 44963587 44963766 -117636164 - MIR SINE MIR -1 261 81 599 281 62 44 chrX 44964079 44964644 -117635286 + L1ME LINE L1 4408 4982 -1164 21 0 0 0 chrX 44964859 44964880 -117635050 + AT_rich Low_complexity Low_complexity 1 21 0 332 296 75 86 chrX 44964913 44965193 -117634737 + L1ME LINE L1 5320 5596 -525 347 293 195 11 chrX 44966885 44967059 -117632871 + MIR SINE MIR 31 236 -26 1696 131 104 0 chrX 44967070 44967330 -117632600 + AluSx SINE Alu 1 287 -25 1314 69 0 0 chrX 44967331 44967505 -117632425 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 280 210 97 153 chrX 44968547 44968671 -117631259 - MIR3 SINE MIR -80 128 12 505 338 6 6 chrX 44968987 44969147 -117630783 + MER5A DNA MER1_type 6 165 -24 250 204 84 108 chrX 44969183 44969350 -117630580 - Charlie7 DNA MER1_type -1 2611 2449 665 283 137 54 chrX 44970126 44970441 -117629489 - L2 LINE L2 0 3272 2932 297 0 0 0 chrX 44970626 44970659 -117629271 + (CA)n Simple_repeat Simple_repeat 2 34 0 2473 276 100 44 chrX 44970701 44972344 -117627586 - L1ME4a LINE L1 -107 6014 4464 1902 151 21 0 chrX 44972344 44972629 -117627301 + AluSx SINE Alu 1 291 -21 2473 276 100 44 chrX 44972629 44973810 -117626120 - L1ME4a LINE L1 -1657 4464 2993 2053 126 0 26 chrX 44973810 44974120 -117625810 - AluSx SINE Alu -10 302 1 2473 276 100 44 chrX 44974120 44974342 -117625588 - L1ME4a LINE L1 -3128 2993 2785 2234 40 0 7 chrX 44974348 44974621 -117625309 + AluY SINE Alu 41 311 0 689 200 135 69 chrX 44975068 44975328 -117624602 - L2 LINE L2 0 3313 3037 288 0 0 0 chrX 44975373 44975405 -117624525 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chrX 44975404 44975424 -117624506 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 216 143 54 0 chrX 44976000 44976056 -117623874 + (TA)n Simple_repeat Simple_repeat 2 60 0 243 0 0 0 chrX 44976065 44976092 -117623838 + (CA)n Simple_repeat Simple_repeat 2 28 0 1633 175 38 34 chrX 44976485 44976777 -117623153 - AluJb SINE Alu -19 293 1 1182 234 4 0 chrX 44977188 44977415 -117622515 + MIR SINE MIR 27 254 -8 191 59 0 59 chrX 44977416 44977450 -117622480 + (TTA)n Simple_repeat Simple_repeat 1 32 0 243 103 0 0 chrX 44977970 44978009 -117621921 + (CAG)n Simple_repeat Simple_repeat 1 39 0 * 525 121 0 0 chrX 44978007 44978090 -117621840 + (GGA)n Simple_repeat Simple_repeat 3 85 0 731 299 30 17 chrX 44978400 44978631 -117621299 + MIR SINE MIR 28 261 -1 1432 25 0 0 chrX 44979519 44979677 -117620253 + L1PA2 LINE L1 5998 6155 0 591 197 262 6 chrX 44979877 44980060 -117619870 - MIR SINE MIR -10 252 23 625 246 16 27 chrX 44980402 44980585 -117619345 - MIR SINE MIR -3 259 79 605 269 7 0 chrX 44981303 44981444 -117618486 + MIR SINE MIR 2 143 -119 2577 67 0 3 chrX 44983366 44983680 -117616250 + AluSq SINE Alu 1 313 0 207 256 215 33 chrX 44983680 44983791 -117616139 - MIR SINE MIR -86 176 40 1075 225 8 46 chrX 44985173 44985435 -117614495 - MIR SINE MIR -10 252 1 404 290 122 36 chrX 44985540 44985761 -117614169 - MIR SINE MIR 0 262 23 711 296 69 4 chrX 44986194 44986427 -117613503 - MIR SINE MIR 0 262 15 1676 157 61 4 chrX 44986610 44986722 -117613208 + AluSx SINE Alu 1 105 -207 318 26 0 0 chrX 44986722 44986761 -117613169 + (CA)n Simple_repeat Simple_repeat 2 40 0 1676 157 61 4 chrX 44986761 44986928 -117613002 + AluSx SINE Alu 105 296 -16 1949 166 0 0 chrX 44987623 44987931 -117611999 + AluJb SINE Alu 5 312 0 881 279 39 0 chrX 44987931 44988160 -117611770 + MIR SINE MIR 19 256 -6 252 200 0 0 chrX 44988362 44988427 -117611503 + (CA)n Simple_repeat Simple_repeat 2 66 0 22 70 0 0 chrX 44989925 44989968 -117609962 + AT_rich Low_complexity Low_complexity 1 43 0 397 303 91 6 chrX 44993224 44993389 -117606541 + MIR SINE MIR 2 180 -82 250 285 260 8 chrX 44993411 44993534 -117606396 + MER5A DNA MER1_type 36 189 0 4906 177 62 14 chrX 44993657 44993741 -117606189 + L1MB7 LINE L1 4277 4356 -1828 2195 102 0 0 chrX 44993741 44994088 -117605842 + AluY SINE Alu 1 347 0 4906 177 62 14 chrX 44994088 44995005 -117604925 + L1MB7 LINE L1 4356 5228 -956 1830 196 24 47 chrX 44995005 44995208 -117604722 - MLT1A2 LTR MaLR 0 374 183 2307 67 0 14 chrX 44995208 44995505 -117604425 + AluY SINE Alu 1 293 -18 1830 196 24 47 chrX 44995505 44995684 -117604246 - MLT1A2 LTR MaLR -191 183 1 4906 177 62 14 chrX 44995684 44996484 -117603446 + L1MB7 LINE L1 5228 6184 0 796 320 19 4 chrX 44996754 44997010 -117602920 + MIR SINE MIR 1 260 -2 189 184 265 0 chrX 44997086 44997135 -117602795 + MIR SINE MIR 63 124 -84 718 267 111 5 chrX 44997179 44997396 -117602534 + MIR SINE MIR 23 262 0 452 255 121 25 chrX 44997998 44998155 -117601775 - L2 LINE L2 0 3313 3142 1503 158 12 0 chrX 44998300 44998547 -117601383 - L1M2 LINE L1 -597 5715 5466 * 2004 158 114 0 chrX 44998541 44998945 -117600985 + L1MA9 LINE L1 5825 6274 -38 238 293 135 61 chrX 45000204 45000461 -117599469 + L2 LINE L2 2779 3042 -271 353 270 143 32 chrX 45000498 45000624 -117599306 + L2 LINE L2 3114 3253 -19 935 336 121 27 chrX 45000680 45001350 -117598580 + L2 LINE L2 2079 2811 -503 277 224 1 69 chrX 45001480 45001567 -117598363 - MLT1I LTR MaLR 0 567 309 2600 184 34 91 chrX 45001775 45002394 -117597536 - MLT1E LTR MaLR 0 593 10 245 186 0 51 chrX 45002394 45002453 -117597477 - MLT1I LTR MaLR -263 146 91 261 298 76 69 chrX 45003177 45003308 -117596622 - L2 LINE L2 -214 3058 2927 1123 193 85 22 chrX 45003366 45003806 -117596124 - MLT1E LTR MaLR -31 562 1 2694 163 65 12 chrX 45003881 45004361 -117595569 + LTR22 LTR ERVK 1 505 -4 210 308 0 31 chrX 45004650 45004715 -117595215 + L2 LINE L2 3134 3196 -76 232 232 0 18 chrX 45004884 45004940 -117594990 + L1ME LINE L1 5710 5764 -357 201 39 0 0 chrX 45004944 45004970 -117594960 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 868 186 7 7 chrX 45004970 45005115 -117594815 - FRAM SINE Alu -31 145 1 979 212 11 0 chrX 45005371 45005555 -117594375 + MER5A DNA MER1_type 1 186 -3 301 283 64 96 chrX 45005909 45006223 -117593707 + L2 LINE L2 100 403 -2911 1035 105 0 0 chrX 45007018 45007151 -117592779 + AluSq/x SINE Alu 1 133 -180 2198 94 3 0 chrX 45007153 45007439 -117592491 + AluY SINE Alu 1 287 -24 34 0 0 0 chrX 45007439 45007473 -117592457 + AT_rich Low_complexity Low_complexity 1 34 0 424 226 89 42 chrX 45007473 45007641 -117592289 - HAL1 LINE L1 -906 1601 1426 272 340 49 32 chrX 45008172 45008357 -117591573 + L2 LINE L2 1176 1363 -1951 2625 189 78 5 chrX 45008521 45009123 -117590807 + L1MC3 LINE L1 1582 2349 -4033 264 30 0 0 chrX 45009123 45009156 -117590774 + (CA)n Simple_repeat Simple_repeat 2 34 0 2625 189 78 5 chrX 45009156 45009211 -117590719 + L1MC3 LINE L1 2349 2399 -3983 1893 301 41 16 chrX 45009213 45009794 -117590136 + L1MDb LINE L1 8 603 -5806 364 181 164 26 chrX 45009890 45010006 -117589924 + L1MB8 LINE L1 6038 6169 -9 9362 173 71 56 chrX 45010010 45013115 -117586815 + L1MC3 LINE L1 4186 7429 -592 271 302 35 0 chrX 45013115 45013201 -117586729 + MLT1F1 LTR MaLR 35 123 -444 9362 173 71 56 chrX 45013201 45013410 -117586520 + L1MC3 LINE L1 7429 7633 -388 2480 76 0 0 chrX 45013410 45013713 -117586217 + AluY SINE Alu 1 303 -8 843 169 43 33 chrX 45013713 45013868 -117586062 + L1ME LINE L1 5428 5587 -579 3182 53 0 0 chrX 45013868 45014262 -117585668 - L1PA7 LINE L1 -2 6152 5759 410 279 14 20 chrX 45014341 45014488 -117585442 + L2 LINE L2 2118 2263 -1051 711 208 0 8 chrX 45014497 45014627 -117585303 + MER45A DNA AcHobo 1 129 -49 28 29 0 0 chrX 45014658 45014693 -117585237 + AT_rich Low_complexity Low_complexity 1 35 0 554 112 0 11 chrX 45014693 45014782 -117585148 - L1P LINE L1 -1136 5010 4923 186 281 16 16 chrX 45014888 45014952 -117584978 - MER5A DNA MER1_type -91 98 35 * 201 219 24 0 chrX 45014923 45014964 -117584966 + MER5A DNA MER1_type 137 178 -11 2089 169 78 30 chrX 45015824 45016297 -117583633 - L1MD2 LINE L1 -3 6356 5861 2822 219 73 21 chrX 45016299 45017028 -117582902 - L1MDb LINE L1 -5185 1224 458 368 238 0 48 chrX 45017073 45017157 -117582773 - L1MDb LINE L1 -6320 89 10 550 128 0 68 chrX 45017481 45017614 -117582316 + L1MB2 LINE L1 6048 6171 0 186 298 0 0 chrX 45017963 45018010 -117581920 + L2 LINE L2 3218 3264 -8 505 284 19 60 chrX 45018122 45018337 -117581593 - MIR SINE MIR -25 237 32 279 352 70 0 chrX 45018716 45018844 -117581086 + L2 LINE L2 3172 3308 -5 265 254 8 45 chrX 45018864 45018998 -117580932 + MER113 DNA MER1_type? 2 130 -391 250 277 15 0 chrX 45019108 45019173 -117580757 + MER113 DNA MER1_type? 456 521 0 460 221 200 0 chrX 45019223 45019368 -117580562 - MER5B DNA MER1_type -4 174 1 651 233 146 32 chrX 45020058 45020277 -117579653 - MIR SINE MIR -3 259 16 287 289 0 12 chrX 45020297 45020380 -117579550 - MIR3 SINE MIR -23 185 104 1226 239 173 31 chrX 45020415 45020893 -117579037 - L2 LINE L2 -3 3310 2765 613 198 161 6 chrX 45021333 45021495 -117578435 + MER5A DNA MER1_type 1 187 -2 14981 198 52 14 chrX 45021549 45021608 -117578322 - L1PB1 LINE L1 -1 6866 6811 2277 101 0 19 chrX 45021608 45021924 -117578006 - AluSx SINE Alu -2 310 1 14981 198 52 14 chrX 45021924 45028511 -117571419 - L1PB1 LINE L1 -56 6811 6 982 211 81 63 chrX 45028526 45028628 -117571302 - L2 LINE L2 -521 2793 2694 2370 85 0 0 chrX 45028628 45028922 -117571008 + AluSc SINE Alu 1 294 -15 982 211 81 63 chrX 45028922 45029138 -117570792 - L2 LINE L2 -620 2694 2466 2268 113 0 0 chrX 45029138 45029438 -117570492 + AluY SINE Alu 1 300 -11 982 211 81 63 chrX 45029438 45029450 -117570480 - L2 LINE L2 -848 2466 2456 386 281 106 19 chrX 45030785 45030945 -117568985 - MIR SINE MIR -43 219 46 756 233 161 9 chrX 45031123 45031346 -117568584 + MIR SINE MIR 6 262 0 228 220 17 17 chrX 45031540 45031599 -117568331 + L2 LINE L2 3214 3272 0 261 316 20 0 chrX 45031959 45032057 -117567873 + L2 LINE L2 2140 2239 -1075 232 111 0 0 chrX 45032059 45032095 -117567835 + MER63 DNA MER1_type 4 39 -891 356 125 31 94 chrX 45032095 45032212 -117567718 - L1M4 LINE L1 -407 5755 5647 559 313 111 16 chrX 45032214 45032457 -117567473 + L2 LINE L2 3007 3272 0 1497 238 45 55 chrX 45033421 45033769 -117566161 + L1ME3A LINE L1 5624 5967 -203 1811 171 3 0 chrX 45033769 45034062 -117565868 + AluJo SINE Alu 5 298 -14 1497 238 45 55 chrX 45034062 45034243 -117565687 + L1ME3A LINE L1 5967 6148 -22 578 298 57 36 chrX 45034281 45034529 -117565401 + MIR SINE MIR 8 260 -2 911 226 40 33 chrX 45034531 45034805 -117565125 - L1MCb LINE L1 -5364 681 406 982 162 94 27 chrX 45034808 45035071 -117564859 + MLT1B LTR MaLR 5 226 -164 1800 234 96 9 chrX 45035071 45035635 -117564295 + L1MD3 LINE L1 5391 6003 -1992 * 2574 156 24 28 chrX 45035168 45035669 -117564261 + L1MB8 LINE L1 5530 6028 -150 543 228 16 0 chrX 45035698 45035825 -117564105 - L1MD3 LINE L1 -34 7961 7833 2507 204 28 15 chrX 45035827 45036366 -117563564 - L1MD2 LINE L1 -216 6143 5598 2081 67 21 0 chrX 45036381 45036666 -117563264 + L1PA14 LINE L1 5869 6159 -2 6380 198 53 17 chrX 45036678 45038635 -117561295 - L1MDa LINE L1 -3580 2960 933 300 276 0 66 chrX 45038670 45038746 -117561184 - L1MDa LINE L1 -6343 197 127 1086 227 59 0 chrX 45038753 45038991 -117560939 - L1MDa LINE L1 -5452 1088 837 575 273 12 12 chrX 45038997 45039162 -117560768 - L1MDa LINE L1 -6357 183 19 591 174 14 14 chrX 45039172 45039316 -117560614 + L1MB8 LINE L1 6033 6176 -2 2186 116 0 17 chrX 45039350 45039652 -117560278 + AluSx SINE Alu 1 297 -15 371 377 52 5 chrX 45039846 45040037 -117559893 - MIR SINE MIR -6 256 57 255 346 108 49 chrX 45040055 45040240 -117559690 + L2 LINE L2 3077 3272 0 8864 224 44 39 chrX 45040370 45043073 -117556857 - L1M4 LINE L1 -886 5260 2542 332 264 16 16 chrX 45243073 45243198 -117356732 + L1M4b LINE L1 2266 2390 -4569 2332 102 3 6 chrX 45243267 45243581 -117356349 + AluSp SINE Alu 1 313 0 2303 106 3 0 chrX 45243615 45243918 -117356012 + AluSx SINE Alu 1 304 -8 26 30 0 0 chrX 45244164 45244197 -117355733 + AT_rich Low_complexity Low_complexity 1 33 0 2970 281 79 47 chrX 45244198 45245499 -117354431 + L1M4 LINE L1 3 1345 -5514 7628 219 33 32 chrX 45245502 45246416 -117353514 + L1M4 LINE L1 3895 4806 -2189 1599 209 70 11 chrX 45246416 45246790 -117353140 + MSTD LTR MaLR 1 396 0 7628 219 33 32 chrX 45246790 45247485 -117352445 + L1M4 LINE L1 4806 5499 -1496 2173 108 15 80 chrX 45247485 45247525 -117352405 + THE1B LTR MaLR 1 42 -322 2342 106 0 3 chrX 45247525 45247836 -117352094 - AluSx SINE Alu -2 310 1 2173 108 15 80 chrX 45247836 45248184 -117351746 + THE1B LTR MaLR 42 364 0 7628 219 33 32 chrX 45248184 45248847 -117351083 + L1M4 LINE L1 5499 6178 -817 2235 108 7 3 chrX 45248847 45249153 -117350777 + AluSg SINE Alu 1 307 -3 7628 219 33 32 chrX 45249153 45249367 -117350563 + L1M4 LINE L1 6178 6390 -605 4659 78 24 0 chrX 45249371 45249995 -117349935 - L1PA10 LINE L1 -4 6164 5526 2128 244 48 33 chrX 45250139 45250724 -117349206 + L1M4b LINE L1 2625 3208 -3749 16338 36 5 0 chrX 45250724 45253460 -117346470 + L1PA4 LINE L1 3414 6152 -3 2128 244 48 33 chrX 45253460 45253951 -117345979 + L1M4b LINE L1 3208 3690 -3267 1917 178 40 0 chrX 45253947 45254323 -117345607 - L1 LINE L1 -1015 5131 4741 * 1442 139 80 51 chrX 45254319 45254694 -117345236 + L1MA7 LINE L1 5903 6288 -3 * 26 0 0 0 chrX 45254694 45254720 -117345210 + AT_rich Low_complexity Low_complexity 1 26 0 675 120 10 0 chrX 45254723 45254845 -117345085 - L1ME LINE L1 -704 5466 5343 456 249 101 29 chrX 45254836 45255045 -117344885 - L1 LINE L1 -2110 4036 3813 * 4819 176 42 17 chrX 45255326 45256228 -117343702 - L1MC3 LINE L1 0 7785 6850 261 0 0 0 chrX 45256228 45256257 -117343673 + (TG)n Simple_repeat Simple_repeat 1 29 0 4819 176 42 17 chrX 45256257 45256432 -117343498 - L1MC3 LINE L1 -935 6850 6681 2020 256 92 65 chrX 45256502 45256570 -117343360 - L1M4c LINE L1 -4571 2388 2323 1862 157 13 16 chrX 45256570 45256876 -117343054 - AluJo SINE Alu -5 307 3 2020 256 92 65 chrX 45256876 45259108 -117340822 - L1M4c LINE L1 -4636 2323 25 215 281 53 0 chrX 45259130 45259187 -117340743 - L2 LINE L2 -5 3308 3249 455 288 50 14 chrX 45259206 45259425 -117340505 - L1ME1 LINE L1 -5 6161 5935 581 315 50 17 chrX 45260054 45260295 -117339635 - MIR SINE MIR -13 249 1 245 278 167 16 chrX 45260965 45261091 -117338839 - MIR SINE MIR -22 240 96 230 242 87 155 chrX 45261314 45261624 -117338306 + L3 LINE CR1 1104 1392 -185 1913 162 0 3 chrX 45262051 45262359 -117337571 + AluJb SINE Alu 2 308 -4 567 329 55 71 chrX 45262463 45262843 -117337087 - L2 LINE L2 -2 3270 2897 2251 86 0 7 chrX 45263392 45263683 -117336247 - AluSx SINE Alu -23 289 1 353 282 135 18 chrX 45264917 45265080 -117334850 + MIR SINE MIR 3 184 -78 1288 168 19 29 chrX 45266625 45266935 -117332995 + MER33 DNA MER1_type 1 307 -17 432 243 133 75 chrX 45267018 45267191 -117332739 + MIR SINE MIR 77 259 -3 441 225 92 33 chrX 45267428 45267548 -117332382 - L2 LINE L2 0 3313 3187 410 310 193 5 chrX 45268001 45268198 -117331732 + MIR SINE MIR 23 256 -6 392 265 81 44 chrX 45268323 45268459 -117331471 - MER63 DNA MER1_type -294 768 2 220 302 0 0 chrX 45268676 45268729 -117331201 + L2 LINE L2 3219 3271 -1 6340 221 68 74 chrX 45269106 45270662 -117329268 - L1MB7 LINE L1 -9 6244 4680 2365 91 0 0 chrX 45270662 45270959 -117328971 + AluSx SINE Alu 1 297 -15 6340 221 68 74 chrX 45270959 45272190 -117327740 - L1MB7 LINE L1 -1573 4680 3443 1801 176 5 57 chrX 45272190 45272594 -117327336 + MLT1B LTR MaLR 1 383 -7 6340 221 68 74 chrX 45272594 45273454 -117326476 - L1MB7 LINE L1 -2810 3443 2493 1664 171 20 40 chrX 45273454 45273758 -117326172 - AluJo SINE Alu -13 299 2 6340 221 68 74 chrX 45273758 45274142 -117325788 - L1MB7 LINE L1 -3760 2493 2108 2275 109 12 0 chrX 45274157 45274486 -117325444 - L1PA14 LINE L1 -2 6159 5827 1526 98 6 66 chrX 45274486 45274690 -117325240 - L1M3 LINE L1 -603 5558 5370 2339 89 7 0 chrX 45274690 45274982 -117324948 - AluSx SINE Alu -18 294 1 1526 98 6 66 chrX 45274982 45275083 -117324847 - L1M3 LINE L1 -791 5370 5265 405 289 58 50 chrX 45275072 45275432 -117324498 - L1MEc LINE L1 -4320 2076 1714 * 2512 271 92 50 chrX 45275426 45277863 -117322067 - L1M4c LINE L1 -4436 2702 11 2623 113 3 3 chrX 45277928 45278292 -117321638 - THE1B LTR MaLR 0 364 1 299 291 154 0 chrX 45279115 45279232 -117320698 + L2 LINE L2 3138 3272 0 312 298 60 68 chrX 45279604 45279970 -117319960 + L1ME LINE L1 4908 5270 -876 530 315 89 14 chrX 45280087 45280446 -117319484 + L1ME LINE L1 5420 5805 -316 340 226 22 15 chrX 45282250 45282387 -117317543 + GA-rich Low_complexity Low_complexity 3 140 0 560 282 108 47 chrX 45284822 45285130 -117314800 + L1ME4a LINE L1 5614 5961 -160 279 0 0 0 chrX 45285130 45285161 -117314769 + (TG)n Simple_repeat Simple_repeat 2 32 0 560 282 108 47 chrX 45285161 45285316 -117314614 + L1ME4a LINE L1 5961 6105 -16 809 227 82 28 chrX 45285383 45285629 -117314301 - MIR SINE MIR 0 262 9 279 273 193 0 chrX 45285899 45285987 -117313943 - L2 LINE L2 0 3272 3168 279 236 18 0 chrX 45286191 45286246 -117313684 - L2 LINE L2 -8 3264 3209 205 237 72 72 chrX 45286299 45286396 -117313534 - MIR SINE MIR 0 262 166 253 312 203 14 chrX 45286796 45286934 -117312996 - MIR SINE MIR -76 186 23 331 302 50 60 chrX 45289028 45289210 -117310720 - MIR SINE MIR -63 199 20 431 290 120 14 chrX 45289473 45289690 -117310240 - MIR SINE MIR 0 262 23 2183 111 10 3 chrX 45289801 45290108 -117309822 - AluJb SINE Alu -3 309 1 541 234 36 55 chrX 45290499 45290773 -117309157 + L1ME4a LINE L1 5652 5920 -201 188 314 0 23 chrX 45290928 45291014 -117308916 + MIR SINE MIR 129 212 -50 188 370 110 23 chrX 45291134 45291307 -117308623 + L2 LINE L2 2560 2747 -567 488 209 209 0 chrX 45291499 45291646 -117308284 + MER5A DNA MER1_type 6 188 -1 951 248 24 16 chrX 45291909 45292163 -117307767 + MIR SINE MIR 5 260 -2 488 373 72 0 chrX 45293568 45293721 -117306209 + MER91A DNA MER1_type 33 196 0 3246 143 19 19 chrX 45293924 45294440 -117305490 - MLT2B1 LTR ERVL -4 516 1 240 259 49 37 chrX 45294918 45294999 -117304931 + L3 LINE CR1 1043 1124 -453 2195 119 3 0 chrX 45295048 45295341 -117304589 + AluSx SINE Alu 1 294 -18 504 250 8 8 chrX 45295571 45295699 -117304231 - MIR SINE MIR -34 228 101 2776 135 2 38 chrX 45295699 45296151 -117303779 + L1MB1 LINE L1 5730 6165 -3 22 0 0 0 chrX 45296155 45296177 -117303753 + AT_rich Low_complexity Low_complexity 1 22 0 4464 199 34 84 chrX 45296229 45296700 -117303230 + L1ME1 LINE L1 4171 4664 -1502 2324 104 0 0 chrX 45296700 45296997 -117302933 - AluSx SINE Alu -15 297 1 4464 199 34 84 chrX 45296997 45297260 -117302670 + L1ME1 LINE L1 4664 4939 -1227 1540 173 3 89 chrX 45297260 45297584 -117302346 - AluJo SINE Alu -16 296 1 4464 199 34 84 chrX 45297584 45298961 -117300969 + L1ME1 LINE L1 4939 6162 -4 13121 214 72 32 chrX 45299050 45300056 -117299874 + L1MB1 LINE L1 1 965 -5027 1972 145 3 10 chrX 45300056 45300366 -117299564 + AluJo SINE Alu 1 308 -4 13121 214 72 32 chrX 45300366 45301541 -117298389 + L1MB1 LINE L1 965 2092 -3900 1737 34 0 10 chrX 45301541 45301747 -117298183 + AluY SINE Alu 96 299 -12 13121 214 72 32 chrX 45301747 45302950 -117296980 + L1MB1 LINE L1 2092 3246 -2746 2321 154 9 0 chrX 45302950 45303295 -117296635 - MER7A DNA MER2_type 0 346 1 13121 214 72 32 chrX 45303295 45304543 -117295387 + L1MB1 LINE L1 3246 4443 -1549 1559 183 0 36 chrX 45304543 45304817 -117295113 - AluJb SINE Alu -20 292 29 13121 214 72 32 chrX 45304817 45305338 -117294592 + L1MB1 LINE L1 4443 4942 -1050 2274 107 0 23 chrX 45305338 45305647 -117294283 + AluSx SINE Alu 1 302 -10 13121 214 72 32 chrX 45305647 45306580 -117293350 + L1MB1 LINE L1 4942 5992 0 342 45 0 0 chrX 45307747 45307791 -117292139 + (CA)n Simple_repeat Simple_repeat 2 45 0 414 204 0 0 chrX 45307992 45308095 -117291835 + (TA)n Simple_repeat Simple_repeat 1 103 0 937 17 0 63 chrX 45308129 45308304 -117291626 + (TA)n Simple_repeat Simple_repeat 1 164 0 934 242 62 12 chrX 45308819 45309063 -117290867 + MIR SINE MIR 4 259 -3 375 295 23 58 chrX 45309267 45309440 -117290490 + L3 LINE CR1 1395 1561 -16 231 284 0 74 chrX 45309678 45309759 -117290171 - MIR3 SINE MIR -36 172 98 229 329 12 12 chrX 45310141 45310223 -117289707 + GA-rich Low_complexity Low_complexity 3 84 0 576 261 144 33 chrX 45310431 45310821 -117289109 + L1MC4a LINE L1 5789 6221 -1587 205 167 28 0 chrX 45311148 45311184 -117288746 + GA-rich Low_complexity Low_complexity 2 38 0 442 290 35 14 chrX 45311322 45311467 -117288463 + MIR SINE MIR 20 167 -95 586 298 34 24 chrX 45311666 45311874 -117288056 + MIR SINE MIR 9 218 -44 437 148 12 0 chrX 45314332 45314413 -117285517 + GA-rich Low_complexity Low_complexity 1 82 0 351 207 0 0 chrX 45315797 45315855 -117284075 - 5S rRNA rRNA -63 58 1 370 171 92 0 chrX 45316041 45316117 -117283813 + MIR SINE MIR 70 152 -110 1759 63 0 0 chrX 45316119 45316326 -117283604 + AluSc SINE Alu 89 295 -14 188 216 118 0 chrX 45316449 45316500 -117283430 + L2 LINE L2 3216 3272 0 306 164 0 0 chrX 45316955 45317010 -117282920 + (ATTG)n Simple_repeat Simple_repeat 1 55 0 482 240 25 50 chrX 45317342 45317463 -117282467 - MIR SINE MIR -61 147 30 614 288 47 38 chrX 45317669 45317881 -117282049 + MIR SINE MIR 20 233 -29 1338 285 121 26 chrX 45321014 45321586 -117278344 + L3 LINE CR1 950 1575 -2 680 194 144 7 chrX 45323124 45323263 -117276667 - FRAM SINE Alu -8 158 1 283 259 0 0 chrX 45323326 45323380 -117276550 - U1 snRNA snRNA -32 133 80 1720 138 44 27 chrX 45324151 45324447 -117275483 + AluJb SINE Alu 1 301 -11 385 362 20 7 chrX 45324475 45324627 -117275303 - MIR3 SINE MIR -39 169 16 207 0 0 0 chrX 45325439 45325462 -117274468 + (A)n Simple_repeat Simple_repeat 1 23 0 462 79 0 0 chrX 45326258 45326321 -117273609 + (CGG)n Simple_repeat Simple_repeat 2 64 0 192 152 0 0 chrX 45327348 45327381 -117272549 + A-rich Low_complexity Low_complexity 2 34 0 489 304 0 59 chrX 45329095 45329299 -117270631 + MIR SINE MIR 21 212 -50 440 311 122 22 chrX 45329594 45329774 -117270156 + MIR3 SINE MIR 2 199 -9 333 0 0 0 chrX 45329880 45329917 -117270013 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chrX 45330494 45330515 -117269415 + AT_rich Low_complexity Low_complexity 1 21 0 2111 94 13 20 chrX 45330679 45330978 -117268952 + AluSg SINE Alu 1 297 -13 184 29 29 29 chrX 45331036 45331070 -117268860 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2191 152 27 25 chrX 45331075 45331483 -117268447 - L1MB1 LINE L1 -17 6151 5743 1936 121 18 25 chrX 45331483 45331928 -117268002 - L1MA9 LINE L1 0 6312 5812 4951 104 40 3 chrX 45331954 45332678 -117267252 - Tigger3(Golem) DNA MER2_type -2 3027 2277 643 213 0 0 chrX 45332669 45332777 -117267153 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1801 143 19 23 chrX 45332795 45333103 -117266827 - L1M2 LINE L1 -519 5793 5487 694 151 36 0 chrX 45333110 45333249 -117266681 + L1M2 LINE L1 2714 2857 -3992 * 799 143 24 100 chrX 45333244 45333362 -117266568 - L1M2 LINE L1 -1399 4747 4650 2144 97 6 64 chrX 45333362 45333691 -117266239 - AluSg SINE Alu 0 310 1 799 143 24 100 chrX 45333691 45333782 -117266148 - L1M2 LINE L1 -1496 4650 4554 5718 146 27 25 chrX 45333798 45333916 -117266014 + L1MA4 LINE L1 5181 5297 -1003 378 0 0 0 chrX 45333916 45333958 -117265972 + (CA)n Simple_repeat Simple_repeat 2 43 0 5718 146 27 25 chrX 45333958 45334469 -117265461 + L1MA4 LINE L1 5297 5806 -494 1522 184 0 71 chrX 45334469 45334795 -117265135 + AluJo SINE Alu 1 303 -9 5718 146 27 25 chrX 45334795 45334926 -117265004 + L1MA4 LINE L1 5806 5935 -365 2293 94 3 38 chrX 45334926 45335246 -117264684 + AluSc SINE Alu 1 309 0 5718 146 27 25 chrX 45335246 45335602 -117264328 + L1MA4 LINE L1 5935 6299 -1 398 148 40 0 chrX 45335649 45335750 -117264180 + CT-rich Low_complexity Low_complexity 2 106 0 1318 174 13 0 chrX 45335753 45335977 -117263953 - AluJo SINE Alu 0 312 86 2468 90 0 0 chrX 45336009 45336319 -117263611 + AluSq SINE Alu 2 311 -2 308 319 69 17 chrX 45336372 45336488 -117263442 - MIR SINE MIR -20 242 121 360 0 0 0 chrX 45338444 45338484 -117261446 + (TG)n Simple_repeat Simple_repeat 2 41 0 192 40 0 0 chrX 45339296 45339321 -117260609 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 505 322 65 82 chrX 45339807 45340050 -117259880 + L2 LINE L2 2444 2690 -582 1569 193 0 0 chrX 45340050 45340289 -117259641 - MER8 DNA MER2_type 0 239 1 505 322 65 82 chrX 45340289 45340888 -117259042 + L2 LINE L2 2690 3270 -2 420 335 49 30 chrX 45341264 45341467 -117258463 + L2 LINE L2 2849 3055 -217 1227 268 49 6 chrX 45341516 45341841 -117258089 - MLT1K LTR MaLR -2 586 248 287 272 144 67 chrX 45341957 45342018 -117257912 + L2 LINE L2 3076 3131 -141 351 0 0 0 chrX 45342018 45342057 -117257873 + (TG)n Simple_repeat Simple_repeat 2 40 0 287 272 144 67 chrX 45342057 45342175 -117257755 + L2 LINE L2 3131 3269 -3 810 204 113 29 chrX 45342458 45342698 -117257232 + MIR SINE MIR 2 261 -1 775 258 5 16 chrX 45343256 45343450 -117256480 - MIR SINE MIR -19 243 52 1070 31 79 0 chrX 45343465 45343592 -117256338 - MER85 DNA T2_type -2 137 1 474 239 71 39 chrX 45343620 45343775 -117256155 + MIR SINE MIR 103 262 0 453 319 70 25 chrX 45344364 45344649 -117255281 + L1ME4a LINE L1 5548 5845 -276 593 270 25 35 chrX 45345055 45345255 -117254675 + MIR SINE MIR 23 220 -42 2149 146 22 28 chrX 45345256 45345558 -117254372 + MLT1A1 LTR MaLR 1 302 -63 1793 179 0 13 chrX 45345558 45345865 -117254065 - AluJo SINE Alu -9 303 1 2149 146 22 28 chrX 45345865 45345924 -117254006 + MLT1A1 LTR MaLR 302 360 -5 183 214 24 24 chrX 45345926 45345968 -117253962 + L2 LINE L2 3219 3260 -12 * 307 225 50 0 chrX 45345962 45346042 -117253888 + MIR SINE MIR 120 203 -59 1970 137 7 3 chrX 45346499 45346810 -117253120 + AluSq SINE Alu 1 312 0 267 287 57 41 chrX 45346837 45346959 -117252971 - MIR SINE MIR -6 256 133 277 315 167 63 chrX 45347042 45347874 -117252056 + L2 LINE L2 2345 3263 -9 811 231 30 15 chrX 45348013 45348216 -117251714 + L2 LINE L2 3105 3310 -3 252 361 112 39 chrX 45349462 45349625 -117250305 + L2 LINE L2 2516 2666 -648 2105 124 0 0 chrX 45349625 45349939 -117249991 - AluSx SINE Alu 0 314 1 252 361 112 39 chrX 45349939 45350104 -117249826 + L2 LINE L2 2666 2869 -445 974 237 46 50 chrX 45350138 45350399 -117249531 - MIR SINE MIR -6 256 2 184 282 64 39 chrX 45350615 45350693 -117249237 + L2 LINE L2 3201 3280 -33 577 227 73 84 chrX 45350885 45351016 -117248914 - L1MC4 LINE L1 -2 8040 7909 314 45 23 0 chrX 45351016 45351060 -117248870 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 577 227 73 84 chrX 45351060 45351285 -117248645 - L1MC4 LINE L1 -133 7909 7688 329 242 118 50 chrX 45351290 45351451 -117248479 + MIR SINE MIR 64 235 -27 842 256 65 12 chrX 45351473 45351719 -117248211 + MIR SINE MIR 3 261 -1 21 36 0 0 chrX 45351882 45351910 -117248020 + AT_rich Low_complexity Low_complexity 1 28 0 1003 206 36 12 chrX 45353408 45353655 -117246275 - L1MB8 LINE L1 -7 6171 5919 626 238 33 0 chrX 45353675 45353826 -117246104 + MIR SINE MIR 70 225 -37 1700 112 22 0 chrX 45353976 45354200 -117245730 - MER30 DNA MER1_type 0 230 2 435 287 101 42 chrX 45354459 45354696 -117245234 - L3 LINE CR1 -539 1038 788 302 0 26 0 chrX 45355328 45355366 -117244564 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5537 90 9 7 chrX 45355550 45356240 -117243690 - LTR8 LTR ERV1 0 691 1 21821 134 62 64 chrX 45356240 45357105 -117242825 - HUERS-P1 LTR ERV1 0 6263 5398 2401 90 3 0 chrX 45357105 45357405 -117242525 - AluSp SINE Alu -12 301 1 21821 134 62 64 chrX 45357405 45357859 -117242071 - HUERS-P1 LTR ERV1 -865 5398 4945 2235 78 0 11 chrX 45357859 45358165 -117241765 + AluSc SINE Alu 1 303 0 21821 134 62 64 chrX 45358165 45359758 -117240172 - HUERS-P1 LTR ERV1 -1318 4945 3350 2264 119 6 0 chrX 45359758 45360069 -117239861 - AluSp SINE Alu 0 313 1 21821 134 62 64 chrX 45360069 45361011 -117238919 - HUERS-P1 LTR ERV1 -2913 3350 2408 5726 27 2 6 chrX 45361011 45361644 -117238286 + L1PA5 LINE L1 5525 6154 0 21821 134 62 64 chrX 45361644 45361815 -117238115 - HUERS-P1 LTR ERV1 -3855 2408 2238 2271 95 0 10 chrX 45361815 45362109 -117237821 - AluSx SINE Alu -21 291 1 21821 134 62 64 chrX 45362109 45363895 -117236035 - HUERS-P1 LTR ERV1 -4025 2238 1 5215 85 6 54 chrX 45363895 45364621 -117235309 - LTR8 LTR ERV1 0 691 1 866 275 29 16 chrX 45365021 45365180 -117234750 + MIR SINE MIR 6 162 -100 1913 157 0 14 chrX 45365180 45365337 -117234593 - AluJb SINE Alu -22 290 132 300 27 0 0 chrX 45365337 45365374 -117234556 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2183 109 0 3 chrX 45365374 45365659 -117234271 - AluSx SINE Alu -28 284 1 1913 157 0 14 chrX 45365659 45365794 -117234136 - AluJb SINE Alu -178 134 1 866 275 29 16 chrX 45365794 45365878 -117234052 + MIR SINE MIR 162 252 -10 180 242 65 32 chrX 45365883 45365945 -117233985 - L3 LINE CR1 -822 755 692 1271 177 9 14 chrX 45366544 45366759 -117233171 - MER58A DNA MER1_type 0 224 11 1245 299 51 50 chrX 45366819 45367530 -117232400 + L2 LINE L2 2530 3244 -69 265 216 57 11 chrX 45367578 45367666 -117232264 - L1MA10 LINE L1 -2 6332 6241 1500 202 63 27 chrX 45367676 45368007 -117231923 - MER2 DNA MER2_type 0 344 2 241 174 0 0 chrX 45368030 45368076 -117231854 + LTR66 LTR ERVL 394 439 -171 242 284 14 0 chrX 45368089 45368163 -117231767 - L1ME1 LINE L1 -77 6089 6015 6645 200 19 17 chrX 45368275 45368734 -117231196 - L1MB4 LINE L1 0 6678 6221 2372 100 0 0 chrX 45368734 45369034 -117230896 - AluSx SINE Alu -12 300 1 6645 200 19 17 chrX 45369034 45369562 -117230368 - L1MB4 LINE L1 -457 6221 5696 2291 116 0 0 chrX 45369562 45369865 -117230065 - AluSx SINE Alu -9 303 1 6645 200 19 17 chrX 45369865 45371256 -117228674 - L1MB4 LINE L1 -982 5696 4302 1605 245 25 4 chrX 45371251 45371728 -117228202 - L1MB4 LINE L1 -2709 3935 3449 * 316 185 25 37 chrX 45371720 45371801 -117228129 - L1MB4 LINE L1 -5634 908 829 * 723 293 91 56 chrX 45371849 45372035 -117227895 - L1MB4 LINE L1 -5829 713 535 705 26 52 0 chrX 45372035 45372151 -117227779 + (TA)n Simple_repeat Simple_repeat 2 123 0 1579 147 42 53 chrX 45372154 45372439 -117227491 - AluJo SINE Alu -30 282 1 723 293 91 56 chrX 45372439 45372855 -117227075 - L1MB4 LINE L1 -6008 534 86 1609 81 0 27 chrX 45372869 45372955 -117226975 - L1MA3 LINE L1 -3 6302 6215 2452 148 52 47 chrX 45372955 45373381 -117226549 + MSTA LTR MaLR 1 428 0 1609 81 0 27 chrX 45373381 45373515 -117226415 - L1MA3 LINE L1 -90 6215 6088 181 356 0 0 chrX 45373559 45373618 -117226312 - MER5B DNA MER1_type -119 59 1 495 304 92 48 chrX 45374915 45375208 -117224722 - LTR33A LTR ERVL -15 508 203 468 297 67 113 chrX 45375672 45375999 -117223931 + L2 LINE L2 2961 3272 0 1999 189 101 2 chrX 45376365 45376762 -117223168 + MER63B DNA MER1_type 1 436 0 2355 95 0 3 chrX 45377175 45377480 -117222450 - AluSx SINE Alu -8 304 1 671 258 83 39 chrX 45377756 45377985 -117221945 - MIR SINE MIR -22 240 2 266 264 345 9 chrX 45379028 45379138 -117220792 + MER5B DNA MER1_type 1 147 -31 23 0 0 0 chrX 45379309 45379332 -117220598 + AT_rich Low_complexity Low_complexity 1 23 0 276 30 0 0 chrX 45379433 45379466 -117220464 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 30 0 0 chrX 45381168 45381201 -117218729 + AT_rich Low_complexity Low_complexity 1 33 0 2519 113 31 22 chrX 45381486 45381902 -117218028 - L1MA7 LINE L1 -103 6188 5769 4384 96 53 5 chrX 45381917 45382035 -117217895 - L1MA2 LINE L1 0 6304 6193 869 164 0 0 chrX 45382035 45382163 -117217767 - FLAM_C SINE Alu -5 128 1 4384 96 53 5 chrX 45382163 45382680 -117217250 - L1MA2 LINE L1 -111 6193 5638 252 195 0 0 chrX 45382894 45382935 -117216995 - MIR SINE MIR -79 129 89 475 279 76 70 chrX 45383038 45383421 -117216509 + L3 LINE CR1 1177 1561 -16 333 306 90 21 chrX 45384230 45384374 -117215556 + MER5A DNA MER1_type 35 188 -1 312 253 26 102 chrX 45384388 45384592 -117215338 - MIR SINE MIR -25 183 1 270 260 39 13 chrX 45386295 45386372 -117213558 - MIR SINE MIR -70 192 114 999 231 0 34 chrX 45386382 45386616 -117213314 - MIR SINE MIR -2 260 35 2261 107 0 0 chrX 45386674 45386983 -117212947 - AluY SINE Alu -2 309 1 1999 133 44 3 chrX 45386983 45387277 -117212653 - AluJo SINE Alu -6 306 1 385 288 196 0 chrX 45387421 45387574 -117212356 - L2 LINE L2 -1 3271 3089 * 401 318 114 30 chrX 45387555 45387791 -117212139 + MIR SINE MIR 6 261 -1 308 330 0 0 chrX 45388667 45388758 -117211172 - MIR SINE MIR -116 146 56 1267 228 33 22 chrX 45388758 45389250 -117210680 - MLT1E LTR MaLR 0 593 1 313 243 14 0 chrX 45389919 45389989 -117209941 - L2 LINE L2 0 3313 3243 1006 236 26 9 chrX 45390348 45390581 -117209349 - MIR SINE MIR -1 261 25 223 333 25 66 chrX 45390613 45390811 -117209119 - L2 LINE L2 -264 3008 2819 1767 161 9 38 chrX 45390826 45391143 -117208787 + AluJb SINE Alu 1 308 -4 259 257 14 68 chrX 45391205 45391279 -117208651 - L2 LINE L2 -3 3269 3200 471 285 12 30 chrX 45391307 45391472 -117208458 - L2 LINE L2 -179 3093 2932 606 239 0 15 chrX 45391789 45391919 -117208011 - MIR SINE MIR -113 149 22 264 273 73 45 chrX 45392036 45392082 -117207848 + MIR SINE MIR 102 145 -107 1330 271 48 23 chrX 45392082 45392399 -117207531 + MLT1I LTR MaLR 1 332 -77 216 97 0 0 chrX 45392399 45392430 -117207500 + (CA)n Simple_repeat Simple_repeat 2 32 0 1330 271 48 23 chrX 45392430 45392511 -117207419 + MLT1I LTR MaLR 331 409 0 264 273 73 45 chrX 45392511 45392579 -117207351 + MIR SINE MIR 145 212 -40 300 355 9 9 chrX 45393334 45393444 -117206486 - MIR SINE MIR -128 134 25 1048 152 134 172 chrX 45393446 45393835 -117206095 - MLT1A2 LTR MaLR 0 374 1 2285 201 46 0 chrX 45393835 45394252 -117205678 - MLT1A2-int LTR MaLR 0 1735 1300 324 164 0 60 chrX 45394320 45394387 -117205543 - MLT1A2-int LTR MaLR -994 741 679 1845 170 40 54 chrX 45394503 45395123 -117204807 - MLT1A2-int LTR MaLR -629 742 5 2075 197 19 96 chrX 45395127 45395169 -117204761 - MLT2B1 LTR ERVL 0 520 476 1254 95 0 0 chrX 45395169 45395348 -117204582 + (TA)n Simple_repeat Simple_repeat 2 180 0 2075 197 19 96 chrX 45395348 45395868 -117204062 - MLT2B1 LTR ERVL -44 476 1 308 323 121 20 chrX 45396026 45396224 -117203706 + L2 LINE L2 2653 2870 -444 331 307 140 7 chrX 45397518 45397668 -117202262 - MIR SINE MIR -73 189 20 202 200 0 0 chrX 45398782 45398817 -117201113 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 377 376 14 28 chrX 45398842 45399132 -117200798 - L2 LINE L2 -341 2973 2688 966 288 141 9 chrX 45399444 45399975 -117199955 + L2 LINE L2 1684 2284 -1030 12737 100 15 17 chrX 45399975 45400795 -117199135 - Tigger1 DNA MER2_type -1 2417 1596 2175 109 3 16 chrX 45400795 45401099 -117198831 - AluSx SINE Alu -12 300 1 12737 100 15 17 chrX 45401099 45402116 -117197814 - Tigger1 DNA MER2_type -822 1596 585 5905 224 123 51 chrX 45402117 45403376 -117196554 + L1MA4 LINE L1 1 1458 -5751 192 40 0 0 chrX 45403376 45403401 -117196529 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 5905 224 123 51 chrX 45403401 45404200 -117195730 + L1MA4 LINE L1 1458 2198 -5011 * 9577 159 23 10 chrX 45404195 45405783 -117194147 + L1MA4 LINE L1 4628 6244 -964 3895 182 8 48 chrX 45405783 45406535 -117193395 + MER72 LTR ERV1 1 722 0 9577 159 23 10 chrX 45406535 45406696 -117193234 + L1MA4 LINE L1 6244 6401 -807 7203 106 16 16 chrX 45406686 45407173 -117192757 + L1MA1 LINE L1 5016 5502 -800 * 2122 123 30 0 chrX 45407173 45407474 -117192456 + AluSx SINE Alu 1 310 -2 7203 106 16 16 chrX 45407474 45408264 -117191666 + L1MA1 LINE L1 5502 6293 -9 6188 133 17 1 chrX 45408277 45409237 -117190693 + L1MA4 LINE L1 6379 7353 -9 3324 127 30 74 chrX 45409237 45409861 -117190069 - Tigger1 DNA MER2_type -1821 597 1 3839 133 45 23 chrX 45409923 45410659 -117189271 - LTR1B LTR ERV1 0 826 1 191 302 86 17 chrX 45410663 45410779 -117189151 + L2 LINE L2 2358 2481 -833 697 280 98 64 chrX 45410779 45411144 -117188786 + L2 LINE L2 2772 3158 -155 3745 155 75 5 chrX 45411144 45411796 -117188134 - LTR34 LTR ERV1 -1 698 1 697 280 98 64 chrX 45411796 45411954 -117187976 + L2 LINE L2 3158 3309 -4 2237 82 7 3 chrX 45412093 45412384 -117187546 + AluSx SINE Alu 1 292 -20 34 0 0 0 chrX 45413458 45413492 -117186438 + AT_rich Low_complexity Low_complexity 1 34 0 405 282 56 14 chrX 45413989 45414131 -117185799 + MIR SINE MIR 28 175 -87 411 343 10 43 chrX 45414448 45414655 -117185275 - L2 LINE L2 -210 3062 2863 555 348 44 0 chrX 45414675 45414833 -117185097 + MER91A DNA MER1_type 2 166 -30 196 226 69 88 chrX 45414879 45414981 -117184949 + L2 LINE L2 2794 2893 -421 217 139 0 0 chrX 45415496 45415532 -117184398 - L2 LINE L2 -3 3310 3275 548 282 56 42 chrX 45415663 45415879 -117184051 + MIR SINE MIR 5 223 -39 200 298 58 29 chrX 45416026 45416130 -117183800 + L2 LINE L2 3165 3271 -42 * 216 317 85 12 chrX 45416126 45416208 -117183722 + L2 LINE L2 3155 3242 -30 439 110 0 121 chrX 45416214 45416305 -117183625 + MADE1 DNA Mariner 1 80 0 757 236 25 0 chrX 45416309 45416470 -117183460 - MIR SINE MIR -62 200 36 196 259 111 0 chrX 45416484 45416538 -117183392 + L2 LINE L2 3210 3269 -3 301 243 48 19 chrX 45417138 45417241 -117182689 - MIR SINE MIR -49 213 108 984 218 0 15 chrX 45417916 45418122 -117181808 - AluJo SINE Alu -4 308 106 1739 229 48 77 chrX 45418536 45419157 -117180773 + L1M3e LINE L1 177 779 -6251 * 2092 133 33 5 chrX 45419155 45419537 -117180393 + L1M2 LINE L1 5231 5622 -669 11549 108 19 15 chrX 45419666 45421370 -117178560 - Tigger1 DNA MER2_type -123 2295 585 3600 213 167 55 chrX 45421396 45422577 -117177353 + L1M2b LINE L1 1 1313 -5896 1572 216 32 3 chrX 45422698 45423041 -117176889 - L1M4 LINE L1 -1788 4358 4006 5114 176 76 17 chrX 45423049 45423640 -117176290 + L1MC2 LINE L1 4735 5290 -1054 2259 104 0 0 chrX 45423640 45423928 -117176002 + AluSg SINE Alu 1 288 -22 5114 176 76 17 chrX 45423928 45424790 -117175140 + L1MC2 LINE L1 5290 6280 -64 2326 141 93 44 chrX 45424796 45424900 -117175030 - L1MA8 LINE L1 0 6291 6193 2435 76 0 16 chrX 45424900 45425215 -117174715 + AluSg SINE Alu 1 310 0 2326 141 93 44 chrX 45425215 45425606 -117174324 - L1MA8 LINE L1 -98 6193 5772 1206 43 7 0 chrX 45425606 45425746 -117174184 - L1PA7 LINE L1 -2 6152 6012 2750 183 100 8 chrX 45425846 45426457 -117173473 + L1MB7 LINE L1 5518 6184 0 1983 116 4 4 chrX 45428371 45428647 -117171283 - AluSx SINE Alu -36 276 1 368 236 254 33 chrX 45428700 45428892 -117171038 - MIR SINE MIR -17 245 19 2411 56 3 0 chrX 45429130 45429458 -117170472 + AluSp SINE Alu 1 329 0 467 213 35 57 chrX 45430700 45430841 -117169089 - MIR SINE MIR -120 142 5 1270 158 78 89 chrX 45430842 45431391 -117168539 + Tigger2 DNA MER2_type 1 543 -2175 556 171 0 0 chrX 45431391 45431473 -117168457 + AluJ/FRAM SINE Alu 214 295 -17 1274 147 30 0 chrX 45431506 45431703 -117168227 + Tigger2 DNA MER2_type 552 754 -1964 950 171 149 22 chrX 45431768 45431949 -117167981 - AluJb SINE Alu -23 289 86 1446 142 9 0 chrX 45431949 45432167 -117167763 - AluJo SINE Alu -92 220 1 689 159 63 0 chrX 45432167 45432293 -117167637 + Tigger2 DNA MER2_type 2492 2625 -93 1203 204 0 42 chrX 45432294 45432534 -117167396 + MER8 DNA MER2_type 2 231 -8 513 115 39 115 chrX 45432541 45432645 -117167285 + Tigger2 DNA MER2_type 2623 2718 0 444 229 0 79 chrX 45432661 45432801 -117167129 - MER112 DNA MER1_type -131 129 1 323 276 96 27 chrX 45432804 45432930 -117167000 - L1ME LINE L1 -522 5640 5505 317 255 75 107 chrX 45432981 45433180 -117166750 - L1ME LINE L1 -647 5517 5325 291 299 179 0 chrX 45433198 45433315 -117166615 - MIR SINE MIR -77 185 48 458 248 28 48 chrX 45433455 45433600 -117166330 - MIR SINE MIR -52 210 69 202 290 14 29 chrX 45433606 45433675 -117166255 - MIR SINE MIR -115 93 26 767 204 68 0 chrX 45434025 45434187 -117165743 + MER5B DNA MER1_type 6 178 0 342 352 91 17 chrX 45434222 45434398 -117165532 - MER5A DNA MER1_type 0 189 1 369 305 52 9 chrX 45434868 45435078 -117164852 + L1ME3A LINE L1 5717 5935 -235 2920 6 6 0 chrX 45435083 45435398 -117164532 + AluYb8 SINE Alu 1 317 -1 2374 70 0 38 chrX 45435404 45435718 -117164212 + AluY SINE Alu 1 302 -9 198 0 0 0 chrX 45436081 45436103 -117163827 + (CA)n Simple_repeat Simple_repeat 2 23 0 1905 208 20 100 chrX 45437002 45437593 -117162337 + MLT2B3 LTR ERVL 5 548 -6 2369 209 79 51 chrX 45440035 45440644 -117159286 + MLT1E2 LTR MaLR 1 626 0 443 175 0 107 chrX 45440882 45440985 -117158945 + MER21B LTR ERV1 1 92 -771 2542 228 88 48 chrX 45441043 45441792 -117158138 + MER21B LTR ERV1 69 847 -16 199 315 0 0 chrX 45441792 45441846 -117158084 + L2 LINE L2 3217 3270 -2 348 190 8 16 chrX 45442060 45442181 -117157749 + (CCCTAA)n Simple_repeat Simple_repeat 1 120 0 1619 188 33 44 chrX 45443010 45443059 -117156871 - L1MB5 LINE L1 -9 6165 6117 2522 86 0 0 chrX 45443059 45443374 -117156556 - L1PA8 LINE L1 -6 6166 5852 1619 188 33 44 chrX 45443374 45443691 -117156239 - L1MB5 LINE L1 -57 6117 5803 * 1967 191 49 5 chrX 45443678 45444103 -117155827 - L1MB3 LINE L1 -9 6174 5731 1886 185 115 3 chrX 45444335 45444718 -117155212 - MSTB LTR MaLR 0 426 1 21100 88 34 25 chrX 45444985 45448738 -117151192 - L1PA7 LINE L1 -2 6467 2677 185 0 40 0 chrX 45448738 45448763 -117151167 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 21100 88 34 25 chrX 45448763 45448778 -117151152 - L1PA7 LINE L1 -3792 2677 2664 44297 47 2 0 chrX 45448778 45454892 -117145038 - L1PA4 LINE L1 -31 6124 2 12400 111 14 55 chrX 45454892 45457610 -117142320 - L1PA7 LINE L1 -3743 2718 9 254 111 0 0 chrX 45457688 45457724 -117142206 - LTR49 LTR ERV1 -385 210 175 837 243 52 19 chrX 45457949 45458217 -117141713 - LTR57-int LTR ERVL -3833 1510 1234 527 154 79 167 chrX 45458155 45458395 -117141535 - LTR49-int LTR ERV1 -225 3137 1343 * 684 312 32 14 chrX 45458381 45458602 -117141328 - LTR49-int LTR ERV1 -3601 2345 2121 1148 187 42 35 chrX 45458669 45458952 -117140978 - LTR49-int LTR ERV1 -2614 2266 1982 263 319 0 0 chrX 45459004 45459073 -117140857 - tRNA-Glu-GAG tRNA tRNA 0 75 7 5766 174 78 22 chrX 45459073 45460219 -117139711 - LTR49-int LTR ERV1 -5119 1212 2 2555 163 151 2 chrX 45460221 45460738 -117139192 - LTR49 LTR ERV1 0 595 2 226 58 115 19 chrX 45461142 45461194 -117138736 - L1MCa LINE L1 -4362 2064 2008 313 305 46 33 chrX 45461648 45461799 -117138131 - L2 LINE L2 -515 2799 2647 617 333 52 33 chrX 45463376 45463796 -117136134 + MER89-int LTR ERV1 158 585 -4062 262 308 92 39 chrX 45464312 45464442 -117135488 + MER89-int LTR ERV1 3784 3920 -2881 556 341 44 54 chrX 45465035 45465718 -117134212 + MER89-int LTR ERV1 2179 2854 -1793 699 199 51 19 chrX 45466213 45466369 -117133561 - MLT1A2 LTR MaLR -213 161 1 2256 226 52 16 chrX 45468723 45469272 -117130658 + MER77 LTR ERV1 54 673 -4 230 294 37 18 chrX 45470505 45470614 -117129316 - L1M4 LINE L1 -1300 4846 4736 2382 91 0 0 chrX 45470672 45470970 -117128960 - AluSx SINE Alu -14 298 1 335 349 91 32 chrX 45471077 45471607 -117128323 - L1M4 LINE L1 -1623 4523 3963 241 221 65 13 chrX 45471781 45471858 -117128072 + LTR40a LTR ERVL 19 99 -420 569 241 17 31 chrX 45471936 45472178 -117127752 + LTR40a LTR ERVL 126 403 -116 2913 155 9 0 chrX 45472457 45472916 -117127014 - L1PA16 LINE L1 0 6166 5704 1311 118 0 15 chrX 45472917 45473112 -117126818 - L1P4 LINE L1 -387 5779 5588 826 116 0 0 chrX 45473388 45473500 -117126430 + AluJb SINE Alu 184 295 -17 1296 260 12 9 chrX 45474690 45475032 -117124898 - L1ME LINE L1 -395 5775 5433 263 208 17 78 chrX 45475054 45475171 -117124759 - L1PA16 LINE L1 -690 5466 5356 2123 123 73 56 chrX 45477515 45477722 -117122208 - THE1B LTR MaLR 0 364 162 2195 96 0 4 chrX 45477722 45478002 -117121928 + AluY SINE Alu 1 279 -32 216 0 0 0 chrX 45478002 45478026 -117121904 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2123 123 73 56 chrX 45478026 45478175 -117121755 - THE1B LTR MaLR -201 163 1 532 281 44 0 chrX 45478538 45478753 -117121177 - L1ME LINE L1 -533 5637 5396 760 273 39 14 chrX 45478759 45479045 -117120885 - L1ME LINE L1 -1359 4787 4495 967 161 21 57 chrX 45479205 45479398 -117120532 - MER5A DNA MER1_type -3 186 1 210 71 0 0 chrX 45479618 45479646 -117120284 + (TAAAAA)n Simple_repeat Simple_repeat 4 31 0 507 333 37 86 chrX 45481154 45481713 -117118217 - L2 LINE L2 -62 3210 2684 1803 312 40 27 chrX 45481721 45482548 -117117382 + HERV16 LTR ERVL 869 1772 -3224 269 241 0 0 chrX 45482561 45482615 -117117315 - HERV16 LTR ERVL -3006 1990 1937 1083 172 74 45 chrX 45482822 45483066 -117116864 + Tigger6 DNA MER2_type 1347 1597 0 422 316 56 14 chrX 45483078 45483293 -117116637 - L1M4 LINE L1 -1430 4716 4493 1595 156 106 16 chrX 45483310 45483630 -117116300 - MLT1C LTR MaLR 0 467 119 371 203 0 0 chrX 45483630 45483694 -117116236 - MLT1C-int LTR MaLR -1307 64 1 2024 163 123 26 chrX 45483695 45484118 -117115812 - MLT1C LTR MaLR -3 464 1 407 317 6 24 chrX 45484202 45484369 -117115561 + LTR41 LTR ERVL 9 172 -601 203 182 0 0 chrX 45484712 45484745 -117115185 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 422 334 92 10 chrX 45484768 45485082 -117114848 - L1M4 LINE L1 -1878 4268 3929 517 325 46 15 chrX 45485083 45485495 -117114435 - L1M4 LINE L1 -2296 3850 3426 557 229 50 15 chrX 45485904 45486105 -117113825 - L1M4 LINE L1 -1481 4665 4458 549 227 49 54 chrX 45486190 45486393 -117113537 - L1ME1 LINE L1 -6 6160 5959 829 155 0 0 chrX 45487474 45487590 -117112340 - FLAM_C SINE Alu -14 129 14 2374 78 3 3 chrX 45488685 45488979 -117110951 + AluSp SINE Alu 1 294 -19 633 129 0 0 chrX 45490215 45490316 -117109614 - L1MB2 LINE L1 -2 6169 6069 189 294 103 0 chrX 45491738 45491806 -117108124 + L2 LINE L2 3148 3222 -50 2548 65 0 3 chrX 45493110 45493417 -117106513 + AluY SINE Alu 1 306 -5 247 256 33 33 chrX 45496878 45496968 -117102962 + MIR SINE MIR 41 130 -78 2270 91 0 7 chrX 45497799 45498107 -117101823 - AluSp SINE Alu 0 308 3 199 331 87 39 chrX 45499039 45499166 -117100764 + MIR SINE MIR 111 243 -19 22 0 0 0 chrX 45499526 45499548 -117100382 + AT_rich Low_complexity Low_complexity 1 22 0 229 321 28 9 chrX 45499646 45499752 -117100178 + LTR16B LTR ERVL 348 455 -9 345 296 79 7 chrX 45499771 45499923 -117100007 + L1ME3 LINE L1 5909 6071 -91 189 271 0 0 chrX 45499927 45499975 -117099955 - L2 LINE L2 -2 3311 3264 372 268 24 31 chrX 45500328 45500455 -117099475 + GA-rich Low_complexity Low_complexity 6 131 0 1777 216 14 0 chrX 45500473 45500839 -117099091 - L1M4 LINE L1 -3184 2962 2592 5011 85 22 2 chrX 45500839 45501460 -117098470 + L1PA11 LINE L1 5525 6174 0 285 175 88 0 chrX 45501496 45501633 -117098297 + (TA)n Simple_repeat Simple_repeat 1 149 0 426 200 48 9 chrX 45501694 45501799 -117098131 + L1MB7 LINE L1 6074 6182 -2 182 167 28 0 chrX 45501804 45501840 -117098090 + MIR SINE MIR 78 114 -148 253 330 74 106 chrX 45502045 45502384 -117097546 + L2 LINE L2 2945 3272 0 194 256 23 0 chrX 45502441 45502484 -117097446 - MIR SINE MIR -134 74 31 363 377 59 19 chrX 45502540 45502914 -117097016 + L2 LINE L2 490 878 -2436 1568 214 13 52 chrX 45502914 45503076 -117096854 + MLT1A2 LTR MaLR 1 168 -206 1801 166 10 22 chrX 45503076 45503389 -117096541 + AluJo SINE Alu 3 311 -1 1568 214 13 52 chrX 45503389 45503610 -117096320 + MLT1A2 LTR MaLR 168 369 -5 590 410 52 9 chrX 45503611 45504167 -117095763 + L2 LINE L2 916 1495 -1819 1364 158 170 15 chrX 45505308 45505567 -117094363 + AluJo SINE Alu 3 301 -1 24 0 0 0 chrX 45506185 45506209 -117093721 + AT_rich Low_complexity Low_complexity 1 24 0 313 288 209 57 chrX 45507016 45507193 -117092737 + MIR SINE MIR 7 210 -52 2435 82 0 3 chrX 45507275 45507580 -117092350 + AluSx SINE Alu 1 304 -8 261 170 0 0 chrX 45508043 45508090 -117091840 - MER89 LTR ERV1 0 559 513 682 212 42 12 chrX 45509772 45509937 -117089993 + MER96B DNA MER1_type? 1 170 -247 2215 119 0 0 chrX 45509945 45510240 -117089690 - AluSx SINE Alu -17 295 1 55 72 0 0 chrX 45510483 45510594 -117089336 + AT_rich Low_complexity Low_complexity 1 111 0 523 235 37 25 chrX 45510595 45510757 -117089173 + MER96B DNA MER1_type? 254 417 0 888 320 111 4 chrX 45510759 45511365 -117088565 + L2 LINE L2 2565 3242 -71 2341 121 12 12 chrX 45511436 45511775 -117088155 - MER44D DNA MER2_type 0 609 1 2350 122 57 0 chrX 45511853 45512206 -117087724 - L1PB4 LINE L1 0 6156 5784 207 0 0 0 chrX 45513139 45513162 -117086768 + (CAA)n Simple_repeat Simple_repeat 2 24 0 291 149 0 122 chrX 45513492 45513566 -117086364 + L1M4 LINE L1 5708 5772 -412 221 317 127 81 chrX 45513989 45514374 -117085556 - L2 LINE L2 -42 3230 2828 308 289 155 0 chrX 45515397 45515591 -117084339 + L1M4 LINE L1 5006 5229 -917 4050 240 62 10 chrX 45515740 45516903 -117083027 + L1 LINE L1 90 1372 -4151 1588 79 0 0 chrX 45516903 45517105 -117082825 - MER4E LTR ERV1 0 766 565 1469 146 114 11 chrX 45517109 45517390 -117082540 - MER4B LTR ERV1 -300 310 1 1235 207 0 0 chrX 45517390 45517636 -117082294 + L1 LINE L1 1369 1614 -4714 283 114 129 29 chrX 45517737 45517807 -117082123 + L1 LINE L1 3373 3449 -2879 * 1632 270 40 9 chrX 45517802 45518254 -117081676 + L1M1 LINE L1 13 478 -7087 5873 174 30 4 chrX 45518266 45519403 -117080527 + L1M1 LINE L1 2035 3200 -4365 * 7146 185 48 20 chrX 45519398 45520823 -117079107 - L1M1 LINE L1 -6087 1478 14 2712 123 83 11 chrX 45520827 45521297 -117078633 + L1MA4 LINE L1 5790 6293 -7 328 246 2 14 chrX 45521298 45521395 -117078535 + L1ME4a LINE L1 5669 5764 -398 228 222 56 0 chrX 45521544 45521598 -117078332 - LTR16B LTR ERVL -407 57 1 1918 333 67 34 chrX 45521665 45522919 -117077011 - HERV16 LTR ERVL -598 5166 3871 1695 260 59 35 chrX 45522919 45523427 -117076503 + MLT2B3 LTR ERVL 4 523 -31 2146 315 44 28 chrX 45523444 45524890 -117075040 - HERV16 LTR ERVL -2853 2143 611 290 344 65 14 chrX 45525446 45525722 -117074208 - LTR16B LTR ERVL 0 464 175 410 360 68 37 chrX 45525747 45525962 -117073968 + L1PB4 LINE L1 22 229 -6980 2563 36 7 3 chrX 45525962 45526268 -117073662 - AluY SINE Alu -4 307 1 410 360 68 37 chrX 45526268 45527022 -117072908 + L1PB4 LINE L1 229 1274 -5935 753 196 40 17 chrX 45527248 45527421 -117072509 + L1PB4 LINE L1 3408 3584 -3624 624 278 88 34 chrX 45527418 45527731 -117072199 + L1PB4 LINE L1 3911 4243 -2965 * 2692 111 86 2 chrX 45527731 45528126 -117071804 + MSTA LTR MaLR 1 428 0 9075 182 29 12 chrX 45528126 45529744 -117070186 + MSTA-int LTR MaLR 1 1646 -5 2227 190 86 0 chrX 45529749 45530143 -117069787 + MSTA LTR MaLR 1 428 0 7498 166 31 107 chrX 45530150 45533404 -117066526 + L1PB4 LINE L1 4247 7214 -4 394 382 0 0 chrX 45533442 45533599 -117066331 - LTR16B LTR ERVL -307 157 1 269 266 21 11 chrX 45533661 45533755 -117066175 + L1ME4a LINE L1 5932 6026 -95 355 367 43 52 chrX 45534017 45534688 -117065242 - L2 LINE L2 -1604 1710 1046 375 325 51 54 chrX 45534752 45535047 -117064883 + L1M4 LINE L1 14 307 -6235 4619 178 11 7 chrX 45535330 45536196 -117063734 + L1MA7 LINE L1 5257 6126 -165 366 281 196 16 chrX 45537256 45537492 -117062438 - L1MC4a LINE L1 -95 6026 5789 332 308 119 63 chrX 45537551 45537900 -117062030 - L1MEd LINE L1 -1329 1161 824 2292 84 0 10 chrX 45538366 45538664 -117061266 - AluSq SINE Alu -13 300 6 588 281 138 0 chrX 45538897 45539100 -117060830 - MIR SINE MIR -21 241 11 565 303 106 39 chrX 45539144 45539662 -117060268 + L1MC/D LINE L1 5272 5824 -1984 228 254 315 22 chrX 45539806 45539987 -117059943 + MIR SINE MIR 15 248 -14 192 77 0 0 chrX 45541041 45541067 -117058863 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 1933 139 0 17 chrX 45541111 45541413 -117058517 + AluSx SINE Alu 13 309 -3 1386 204 4 22 chrX 45541471 45541740 -117058190 + AluJo SINE Alu 1 264 -48 356 329 84 32 chrX 45542035 45542284 -117057646 - L3 LINE CR1 -12 1565 1304 1464 242 60 39 chrX 45542487 45542950 -117056980 + HsTC2a DNA Tc2 11 483 -261 5230 126 32 0 chrX 45542950 45543723 -117056207 + L1P3 LINE L1 9 806 -5655 617 174 93 143 chrX 45543824 45544083 -117055847 + HsTC2a DNA Tc2 465 710 -32 546 276 54 87 chrX 45544146 45544592 -117055338 + MLT1J1 LTR MaLR 16 446 0 2533 63 0 0 chrX 45544980 45545283 -117054647 + AluY SINE Alu 3 305 -6 364 207 22 7 chrX 45545284 45545385 -117054545 + L1M3a LINE L1 611 900 -5746 379 170 170 105 chrX 45545457 45545763 -117054167 + L1MB4 LINE L1 837 1162 -5380 2332 91 0 0 chrX 45545781 45546077 -117053853 - AluSp SINE Alu -17 296 1 10931 128 53 28 chrX 45546219 45547414 -117052516 - Tigger2 DNA MER2_type -319 2399 1235 2349 67 0 7 chrX 45547414 45547712 -117052218 - AluY SINE Alu -15 296 1 10931 128 53 28 chrX 45547712 45547795 -117052135 - Tigger2 DNA MER2_type -1483 1235 1156 1907 160 7 0 chrX 45547795 45548088 -117051842 - AluSx SINE Alu -15 297 3 10931 128 53 28 chrX 45548088 45548782 -117051148 - Tigger2 DNA MER2_type -1562 1156 377 301 88 0 18 chrX 45548907 45548964 -117050966 + L1MA7 LINE L1 6233 6288 -3 8435 232 43 24 chrX 45548969 45551286 -117048644 + L1MB4 LINE L1 2646 4916 -1762 2069 119 0 3 chrX 45551286 45551571 -117048359 + AluSq SINE Alu 1 284 -29 183 42 0 0 chrX 45551578 45551602 -117048328 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 8435 232 43 24 chrX 45551602 45553181 -117046749 + L1MB4 LINE L1 4921 6629 -49 1371 231 70 62 chrX 45553182 45553783 -117046147 + L1MD2 LINE L1 5736 6341 -18 1268 300 60 10 chrX 45554542 45555125 -117044805 + L1M3a LINE L1 989 1600 -4965 448 85 24 0 chrX 45555147 45555229 -117044701 + L1 LINE L1 3868 3951 -2195 1134 225 44 94 chrX 45555249 45556090 -117043840 - L1M4 LINE L1 -1959 4187 3409 489 205 43 18 chrX 45556430 45556595 -117043335 - L1M4 LINE L1 -1492 4654 4485 1321 229 29 43 chrX 45557150 45557526 -117042404 + MLT1A2 LTR MaLR 4 374 0 256 149 0 0 chrX 45559007 45559054 -117040876 - L2 LINE L2 0 3313 3267 499 297 27 14 chrX 45559318 45559466 -117040464 - L3 LINE CR1 -21 1556 1407 322 250 100 0 chrX 45560329 45560409 -117039521 - L2 LINE L2 0 3272 3185 300 280 51 17 chrX 45561308 45561426 -117038504 - L2 LINE L2 -177 3095 2974 272 316 0 0 chrX 45562099 45562178 -117037752 + LTR16A LTR ERVL 16 94 -356 628 308 33 22 chrX 45562215 45562491 -117037439 + LTR16A LTR ERVL 165 443 -7 266 289 44 11 chrX 45562607 45562697 -117037233 + L2 LINE L2 3204 3296 -17 799 224 73 41 chrX 45563122 45563368 -117036562 + MIR SINE MIR 5 258 -4 192 234 0 21 chrX 45563473 45563520 -117036410 - MER5A DNA MER1_type -85 104 59 4013 191 43 4 chrX 45565001 45566160 -117033770 - L1MB8 LINE L1 -16 6162 4969 1780 110 123 10 chrX 45566160 45566468 -117033462 - MER61A LTR ERV1 0 343 1 19977 91 34 25 chrX 45566468 45568190 -117031740 - MER61A-int LTR ERV1 0 6064 4359 2414 65 3 3 chrX 45568190 45568498 -117031432 + AluSx SINE Alu 1 308 -4 19977 91 34 25 chrX 45568498 45570493 -117029437 - MER61A-int LTR ERV1 -1705 4359 1318 1048 162 45 41 chrX 45570530 45571088 -117028842 - MER61A-int LTR ERV1 -4517 700 1 1717 146 77 16 chrX 45571088 45571411 -117028519 - MER61A LTR ERV1 0 343 1 2591 228 13 13 chrX 45571412 45571861 -117028069 - L1MB8 LINE L1 -1175 4971 4520 3466 88 32 4 chrX 45571861 45572360 -117027570 + LTR10D LTR ERV1 1 513 0 2591 228 13 13 chrX 45572360 45572594 -117027336 - L1MB8 LINE L1 -1625 4521 4288 240 302 48 0 chrX 45572849 45572912 -117027018 - MIR SINE MIR -62 146 81 4066 191 67 21 chrX 45573068 45573785 -117026145 + L1MB8 LINE L1 4441 5123 -1055 2316 107 0 10 chrX 45573785 45574093 -117025837 + AluSp SINE Alu 1 305 -8 4066 191 67 21 chrX 45574093 45575021 -117024909 + L1MB8 LINE L1 5123 6168 -10 559 299 37 0 chrX 45575104 45575238 -117024692 + MER91C DNA MER1_type 2 140 0 392 289 59 44 chrX 45575556 45575760 -117024170 - L1ME4a LINE L1 -174 5947 5741 646 239 19 44 chrX 45575819 45576024 -117023906 + L2 LINE L2 3113 3312 -1 629 245 33 7 chrX 45576791 45576942 -117022988 - MIR SINE MIR -88 174 20 332 308 27 41 chrX 45576946 45577092 -117022838 + MIR3 SINE MIR 34 177 -31 * 379 303 16 72 chrX 45577064 45577275 -117022655 - MIR SINE MIR -32 230 33 194 213 21 21 chrX 45577615 45577662 -117022268 - MER5A DNA MER1_type -28 161 115 1965 99 19 0 chrX 45577697 45577960 -117021970 + AluSx SINE Alu 39 306 -6 275 295 137 3 chrX 45578116 45578230 -117021700 - MIR SINE MIR -16 192 65 1950 204 2 15 chrX 45578296 45578662 -117021268 - MLT2C1 LTR ERVL 0 397 35 3806 165 62 11 chrX 45578662 45579360 -117020570 + MER44D DNA MER2_type 1 605 0 1950 204 2 15 chrX 45579360 45579395 -117020535 - MLT2C1 LTR ERVL -362 35 1 607 250 0 26 chrX 45579695 45579847 -117020083 + MIR SINE MIR 107 254 -8 468 255 118 0 chrX 45580235 45580388 -117019542 - MIR SINE MIR -80 182 12 2411 103 0 3 chrX 45580455 45580765 -117019165 - AluSg1 SINE Alu 0 309 1 704 149 9 0 chrX 45580792 45580899 -117019031 + FLAM_C SINE Alu 1 108 -35 5091 77 1 5 chrX 45580899 45581561 -117018369 + PABL_A LTR ERV1 1 660 0 2079 146 0 3 chrX 45581608 45581910 -117018020 + AluJb SINE Alu 2 302 -10 1049 205 35 108 chrX 45582830 45583033 -117016897 - MLT1B LTR MaLR -1 395 179 414 0 0 0 chrX 45583033 45583079 -117016851 + (TA)n Simple_repeat Simple_repeat 2 47 0 1855 140 7 7 chrX 45583079 45583351 -117016579 - AluJo SINE Alu -28 284 13 1049 205 35 108 chrX 45583351 45583565 -117016365 - MLT1B LTR MaLR -215 181 1 185 283 67 0 chrX 45584047 45584107 -117015823 - MIR SINE MIR -79 183 120 390 203 248 20 chrX 45584126 45584279 -117015651 - L2 LINE L2 -5 3308 3121 1150 295 58 58 chrX 45584554 45585108 -117014822 - L2 LINE L2 -4 3309 2753 2180 75 4 4 chrX 45585108 45585424 -117014506 - AluY SINE Alu 0 316 1 1150 295 58 58 chrX 45585424 45585563 -117014367 - L2 LINE L2 -560 2753 2615 233 281 35 18 chrX 45585563 45585677 -117014253 + L1MDb LINE L1 142 257 -6286 421 270 75 61 chrX 45586426 45586785 -117013145 + L1MDb LINE L1 905 1268 -5275 1532 238 17 94 chrX 45586794 45587274 -117012656 + MLT1E LTR MaLR 1 443 -150 5363 127 1 2 chrX 45587384 45588230 -117011700 - L1PA15 LINE L1 -6 6159 5315 1697 245 68 35 chrX 45588229 45589036 -117010894 + L1MDb LINE L1 1518 2351 -4189 * 1096 175 24 22 chrX 45589085 45589325 -117010605 - L1MB5 LINE L1 -8 6664 6422 406 181 0 0 chrX 45589334 45589406 -117010524 + MER21B LTR ERV1 13 84 -779 * 2141 213 108 12 chrX 45589404 45589997 -117009933 + MER21B LTR ERV1 213 862 -1 2544 188 28 7 chrX 45590008 45590583 -117009347 - L1MB5 LINE L1 -231 6441 5855 5500 239 60 8 chrX 45590656 45592452 -117007478 - L1MB5 LINE L1 -1250 5394 3506 6262 54 1 2 chrX 45592501 45593313 -117006617 - L1PA6 LINE L1 0 6154 5344 2090 166 9 49 chrX 45593317 45593424 -117006506 - MER54A LTR ERVL -3 898 788 2357 87 0 7 chrX 45593424 45593723 -117006207 - AluSg SINE Alu -13 297 1 2090 166 9 49 chrX 45593723 45594043 -117005887 - MER54A LTR ERVL -113 788 488 1561 223 52 29 chrX 45594125 45595301 -117004629 - L1MB5 LINE L1 -3159 3485 2210 2136 126 0 16 chrX 45595301 45595611 -117004319 + AluSx SINE Alu 1 305 -7 1561 223 52 29 chrX 45595611 45595638 -117004292 - L1MB5 LINE L1 -4434 2210 2185 1877 196 38 31 chrX 45595693 45596137 -117003793 - MLT1C LTR MaLR -20 447 1 3253 256 74 21 chrX 45596140 45597341 -117002589 - L1MB5 LINE L1 -4565 2081 745 288 0 0 0 chrX 45597341 45597373 -117002557 + (TG)n Simple_repeat Simple_repeat 2 33 0 3253 256 74 21 chrX 45597373 45597966 -117001964 - L1MB5 LINE L1 -5901 745 185 2249 249 72 77 chrX 45597994 45599186 -117000744 + L1M4 LINE L1 2174 3359 -2787 4648 111 3 1 chrX 45599186 45599886 -117000044 - L1MA4A LINE L1 -7 6296 5596 2249 249 72 77 chrX 45599886 45600252 -116999678 + L1M4 LINE L1 3359 3725 -2421 473 245 87 96 chrX 45600395 45600592 -116999338 + L1M4b LINE L1 19 520 -6335 325 287 122 44 chrX 45600601 45600782 -116999148 - L2 LINE L2 -919 2395 2201 733 291 73 67 chrX 45601558 45602009 -116997921 + LTR67 LTR ERVL 104 557 0 26 0 0 0 chrX 45602023 45602049 -116997881 + AT_rich Low_complexity Low_complexity 1 26 0 7593 200 62 73 chrX 45602403 45603615 -116996315 - MER31B-int LTR ERV1 -2464 2472 1248 1770 129 3 93 chrX 45603615 45603925 -116996005 - AluJb SINE Alu -30 282 1 7593 200 62 73 chrX 45603925 45604836 -116995094 - MER31B-int LTR ERV1 -3688 1248 410 3849 185 35 1 chrX 45604836 45605544 -116994386 - MER44D DNA MER2_type -1 604 1 7593 200 62 73 chrX 45605544 45605936 -116993994 - MER31B-int LTR ERV1 -4526 410 15 1533 188 103 49 chrX 45605986 45606428 -116993502 - MER31B LTR ERV1 0 543 1 39798 63 4 2 chrX 45606742 45612487 -116987443 - L1P2 LINE L1 -397 5758 1 794 191 114 61 chrX 45612527 45612773 -116987157 + MER66A LTR ERV1 220 478 0 348 293 70 10 chrX 45612777 45613055 -116986875 + L1MC5 LINE L1 7261 7495 -546 249 284 14 33 chrX 45613095 45613306 -116986624 + L1MC5 LINE L1 7509 7715 -246 * 4903 169 22 12 chrX 45613296 45613625 -116986305 + L1PB4 LINE L1 4220 4544 -1612 2295 113 3 0 chrX 45613625 45614106 -116985824 + AluSp SINE Alu 1 482 0 4903 169 22 12 chrX 45614106 45615689 -116984241 + L1PB4 LINE L1 4544 6151 -5 212 256 0 0 chrX 45616955 45616998 -116982932 + polypurine Low_complexity Low_complexity 5 47 0 334 357 32 36 chrX 45617082 45617362 -116982568 - L2 LINE L2 -470 2844 2566 2241 78 7 3 chrX 45617383 45617697 -116982233 + AluSp SINE Alu 1 315 0 1783 176 116 17 chrX 45617704 45618187 -116981743 + L1MA9 LINE L1 4432 4962 -1184 * 1912 174 103 74 chrX 45618163 45618773 -116981157 + L1MA9 LINE L1 5651 6278 -34 23 0 0 0 chrX 45618842 45618865 -116981065 + AT_rich Low_complexity Low_complexity 1 23 0 2319 78 3 3 chrX 45619023 45619319 -116980611 + AluSp SINE Alu 1 296 -17 266 192 96 0 chrX 45619522 45619574 -116980356 - L2 LINE L2 -3 3310 3254 317 226 0 0 chrX 45619768 45619830 -116980100 - MIR SINE MIR -92 170 109 1946 166 78 14 chrX 45619936 45620369 -116979561 - L1MC2 LINE L1 0 6344 5884 2172 120 0 7 chrX 45620371 45620680 -116979250 - AluSc SINE Alu -2 307 1 344 22 22 0 chrX 45620693 45620738 -116979192 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 39798 42 23 2 chrX 45620738 45626747 -116973183 - L1PA3 LINE L1 -13 6142 2 6989 221 75 36 chrX 45626740 45626898 -116973032 - L1MC2 LINE L1 -445 5899 5749 * 2318 151 28 35 chrX 45626898 45627001 -116972929 + MSTC LTR MaLR 1 103 -325 1945 173 0 3 chrX 45627001 45627302 -116972628 + AluSg SINE Alu 1 300 -10 2318 151 28 35 chrX 45627302 45627629 -116972301 + MSTC LTR MaLR 103 428 0 6989 221 75 36 chrX 45627629 45629848 -116970082 - L1MC2 LINE L1 -595 5749 3359 7330 35 6 0 chrX 45629848 45631523 -116968407 + L1PA5 LINE L1 4447 6141 -13 6989 221 75 36 chrX 45631523 45632330 -116967600 - L1MC2 LINE L1 -2985 3359 2585 251 253 32 0 chrX 45633948 45634043 -116965887 - L1ME LINE L1 -298 5823 5726 1382 80 0 6 chrX 45635320 45635496 -116964434 + AluSg/x SINE Alu 122 296 -16 273 276 61 20 chrX 45635948 45636046 -116963884 - L2 LINE L2 -30 3283 3182 309 261 18 54 chrX 45636106 45636217 -116963713 + MIR SINE MIR 69 175 -87 415 411 44 35 chrX 45637038 45637376 -116962554 - L2 LINE L2 -38 3234 2894 208 349 151 0 chrX 45637414 45637540 -116962390 + L2 LINE L2 3167 3311 -2 1937 211 39 46 chrX 45638207 45638739 -116961191 + MER63C DNA MER1_type 253 830 -231 2432 68 0 3 chrX 45638739 45639046 -116960884 - AluY SINE Alu -5 306 1 1937 211 39 46 chrX 45639046 45639148 -116960782 + MER63C DNA MER1_type 830 931 0 333 206 29 0 chrX 45639539 45639641 -116960289 + GA-rich Low_complexity Low_complexity 1 105 0 241 246 0 43 chrX 45639773 45639842 -116960088 + MIR SINE MIR 176 241 -21 * 529 260 32 19 chrX 45639840 45639994 -116959936 + MIR SINE MIR 33 188 -74 287 305 42 17 chrX 45640382 45640500 -116959430 - MIR SINE MIR -71 191 71 182 437 42 0 chrX 45640592 45640711 -116959219 + L2 LINE L2 3139 3262 -10 423 236 12 103 chrX 45641109 45641274 -116958656 + L2 LINE L2 3162 3311 -2 184 302 69 43 chrX 45641403 45641519 -116958411 + MIR SINE MIR 19 137 -125 546 285 0 33 chrX 45641550 45641701 -116958229 - L2 LINE L2 0 3272 3127 264 292 66 59 chrX 45642280 45642449 -116957481 - MIR SINE MIR -37 171 2 186 245 53 75 chrX 45643823 45643917 -116956013 + L2 LINE L2 3143 3234 -38 32 81 0 0 chrX 45644143 45644217 -116955713 + AT_rich Low_complexity Low_complexity 1 74 0 23 54 0 0 chrX 45644225 45644262 -116955668 + AT_rich Low_complexity Low_complexity 1 37 0 431 261 97 34 chrX 45644275 45644451 -116955479 - MIR SINE MIR -48 214 28 294 235 71 55 chrX 45645735 45645854 -116954076 + MIR SINE MIR 1 112 -96 236 304 0 0 chrX 45645855 45645911 -116954019 - L2 LINE L2 0 3313 3258 * 270 148 98 0 chrX 45645899 45645960 -116953970 + MIR SINE MIR 98 164 -98 211 309 138 32 chrX 45646072 45646195 -116953735 + L2 LINE L2 3137 3272 0 497 281 57 0 chrX 45647063 45647291 -116952639 + MER113 DNA MER1_type? 6 246 -275 502 269 7 7 chrX 45648386 45648527 -116951403 + MLT2F LTR ERVL 1 141 -522 680 219 38 22 chrX 45648531 45648714 -116951216 + MLT1E3 LTR MaLR 46 231 -393 466 249 53 112 chrX 45648547 45648921 -116951009 + MLT2C1 LTR ERVL 44 395 -2 * 2414 77 3 0 chrX 45648990 45649288 -116950642 - AluSg SINE Alu -11 299 1 268 288 45 45 chrX 45649749 45649881 -116950049 - L2 LINE L2 -227 3045 2914 226 297 32 19 chrX 45650393 45650548 -116949382 - L1ME LINE L1 -233 5888 5732 250 247 0 25 chrX 45650559 45650640 -116949290 + L1MC4a LINE L1 5860 5938 -1870 216 109 65 22 chrX 45651436 45651482 -116948448 + GA-rich Low_complexity Low_complexity 1 48 0 645 253 83 75 chrX 45651604 45651762 -116948168 + MIR SINE MIR 1 156 -106 2980 104 9 2 chrX 45651762 45652193 -116947737 + MER57B LTR ERV1 1 434 0 645 253 83 75 chrX 45652193 45652209 -116947721 + MIR SINE MIR 156 170 -92 2264 81 10 0 chrX 45652209 45652504 -116947426 + AluSx SINE Alu 1 298 -14 645 253 83 75 chrX 45652504 45652581 -116947349 + MIR SINE MIR 170 255 -7 21 0 0 0 chrX 45652828 45652849 -116947081 + AT_rich Low_complexity Low_complexity 1 21 0 2130 122 10 0 chrX 45652992 45653286 -116946644 - AluSx SINE Alu -15 297 1 24 32 0 0 chrX 45653669 45653700 -116946230 + AT_rich Low_complexity Low_complexity 1 31 0 2369 89 0 0 chrX 45654368 45654660 -116945270 - AluSg SINE Alu -18 292 1 291 323 16 8 chrX 45654665 45654792 -116945138 + L1ME LINE L1 332 459 -5611 226 305 10 61 chrX 45654894 45655091 -116944839 + L1ME LINE L1 467 653 -5417 23 0 0 0 chrX 45655258 45655281 -116944649 + AT_rich Low_complexity Low_complexity 1 23 0 7168 95 16 19 chrX 45655281 45656460 -116943470 - MER61-int LTR ERV1 -2649 2568 1393 1872 111 12 43 chrX 45656465 45656709 -116943221 - MER61-int LTR ERV1 -3945 1272 1022 2075 144 0 0 chrX 45656709 45657001 -116942929 + AluSg SINE Alu 1 292 -18 2277 106 30 0 chrX 45657003 45657305 -116942625 + AluSp SINE Alu 2 312 -1 1872 111 12 43 chrX 45657305 45657382 -116942548 - MER61-int LTR ERV1 -4196 1021 958 592 85 0 11 chrX 45657382 45657476 -116942454 - MER61-int LTR ERV1 -4377 840 748 279 271 0 0 chrX 45657477 45657547 -116942383 - tRNA-Glu-GAG tRNA tRNA -5 70 1 580 264 23 29 chrX 45657547 45657721 -116942209 - MER61B-int LTR ERV1 -4864 353 181 692 102 8 34 chrX 45657750 45657868 -116942062 - MER61B-int LTR ERV1 -5102 115 1 1413 171 148 39 chrX 45657876 45658233 -116941697 - MER61B LTR ERV1 -29 396 1 220 336 131 8 chrX 45658545 45658667 -116941263 - MIR SINE MIR -106 156 20 1244 199 8 17 chrX 45659070 45659311 -116940619 + MER8 DNA MER2_type 1 239 0 1990 163 0 0 chrX 45659539 45659834 -116940096 + AluJb SINE Alu 1 295 -17 476 335 45 51 chrX 45660421 45660773 -116939157 + L1M4 LINE L1 4061 4410 -1736 260 125 0 36 chrX 45661162 45661218 -116938712 + L1M4 LINE L1 4580 4633 -1513 246 241 139 0 chrX 45661527 45661606 -116938324 - MIR SINE MIR 0 262 173 2076 131 0 3 chrX 45661850 45662155 -116937775 - AluSc SINE Alu 0 304 1 313 313 0 0 chrX 45662215 45662298 -116937632 + MIR SINE MIR 45 127 -135 276 328 55 16 chrX 45662700 45662828 -116937102 - L2 LINE L2 -19 3294 3162 244 241 0 0 chrX 45663623 45663681 -116936249 + L2 LINE L2 3256 3313 0 209 400 0 29 chrX 45663664 45663734 -116936196 + L2 LINE L2 3119 3186 -86 * 186 345 179 0 chrX 45663917 45664001 -116935929 + L2 LINE L2 3142 3240 -32 406 314 124 5 chrX 45664234 45664419 -116935511 - MIR SINE MIR -16 246 40 3253 108 6 12 chrX 45665248 45665747 -116934183 + MER39B LTR ERV1 158 653 0 302 288 72 32 chrX 45665759 45665884 -116934046 - MIR SINE MIR -41 221 92 295 191 94 30 chrX 45666184 45666327 -116933603 + LTR48 LTR ERV1 449 737 -49 1874 146 3 94 chrX 45666399 45666770 -116933160 - MER1B DNA MER1_type 0 337 1 237 163 143 0 chrX 45667098 45667147 -116932783 + MIR SINE MIR 93 148 -114 24 32 0 0 chrX 45667333 45667364 -116932566 + AT_rich Low_complexity Low_complexity 1 31 0 327 308 38 25 chrX 45667888 45668099 -116931831 - MIR SINE MIR -1 261 53 289 210 31 46 chrX 45668105 45668225 -116931705 + MER63 DNA MER1_type 2 743 -93 331 268 62 39 chrX 45668264 45668280 -116931650 + MIR SINE MIR 74 88 -174 2203 179 0 3 chrX 45668280 45668644 -116931286 + MLT1A1 LTR MaLR 3 365 0 331 268 62 39 chrX 45668644 45668806 -116931124 + MIR SINE MIR 88 256 -6 3345 42 10 2 chrX 45669480 45669890 -116930040 + L1PA5 LINE L1 5737 6149 -5 324 206 205 25 chrX 45669945 45670072 -116929858 - MER41B LTR ERV1 -294 341 97 415 286 26 28 chrX 45670181 45670463 -116929467 - L1MC4 LINE L1 -725 7236 7001 200 182 0 0 chrX 45670495 45670528 -116929402 + CT-rich Low_complexity Low_complexity 2 34 0 903 231 64 25 chrX 45670539 45670820 -116929110 - L1MC4 LINE L1 -982 7060 6769 4093 212 98 57 chrX 45670840 45671148 -116928782 - L1MD2 LINE L1 -9 6350 6056 983 24 60 0 chrX 45671148 45671315 -116928615 + (TA)n Simple_repeat Simple_repeat 1 177 0 4093 212 98 57 chrX 45671315 45672230 -116927700 - L1MD2 LINE L1 -303 6056 5179 1939 145 0 3 chrX 45672230 45672519 -116927411 - AluJb SINE Alu -24 288 1 4093 212 98 57 chrX 45672519 45673110 -116926820 - L1MD2 LINE L1 -1180 5179 4613 1154 211 47 76 chrX 45673110 45673493 -116926437 - MLT1A2 LTR MaLR -2 372 1 4093 212 98 57 chrX 45673493 45674551 -116925379 - L1MD2 LINE L1 -1746 4613 3336 2347 68 3 7 chrX 45674551 45674884 -116925046 - AluSp SINE Alu 0 313 1 4093 212 98 57 chrX 45674884 45675095 -116924835 - L1MD2 LINE L1 -3023 3336 3135 1612 113 0 13 chrX 45675095 45675326 -116924604 - AluSg/x SINE Alu -3 307 80 957 248 43 26 chrX 45675427 45675572 -116924358 - L1M1 LINE L1 -7246 319 178 536 117 0 0 chrX 45675572 45675649 -116924281 - MADE1 DNA Mariner 0 80 4 957 248 43 26 chrX 45675649 45675806 -116924124 - L1M1 LINE L1 -7387 178 12 * 5089 230 36 10 chrX 45675791 45679103 -116920827 - L1 LINE L1 -2877 3451 71 771 282 126 66 chrX 45679235 45679926 -116920004 - L1M4 LINE L1 -913 5233 4492 2216 120 0 10 chrX 45679926 45680227 -116919703 - AluSx SINE Alu -14 298 1 771 282 126 66 chrX 45680227 45680290 -116919640 - L1M4 LINE L1 -1654 4492 4434 1110 314 21 33 chrX 45680952 45681465 -116918465 - HERV16 LTR ERVL -3428 1568 1062 320 328 14 141 chrX 45681465 45681892 -116918038 + L2 LINE L2 2838 3210 -62 24 32 0 0 chrX 45682267 45682298 -116917632 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chrX 45683565 45683587 -116916343 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1266 254 8 22 chrX 45684629 45685031 -116914899 + L1ME LINE L1 5380 5775 -395 1388 142 0 9 chrX 45686230 45686441 -116913489 - AluJb SINE Alu -17 295 87 3234 150 8 29 chrX 45686689 45687277 -116912653 + L1PA16 LINE L1 5588 6163 -3 2217 68 50 0 chrX 45687373 45687654 -116912276 - AluY SINE Alu -16 295 1 487 251 13 27 chrX 45687834 45688078 -116911852 - LTR40a LTR ERVL -116 403 124 399 330 58 49 chrX 45688335 45688784 -116911146 + L1M4 LINE L1 4071 4523 -1623 252 0 0 0 chrX 45689046 45689074 -116910856 + (CA)n Simple_repeat Simple_repeat 1 28 0 1958 224 54 18 chrX 45690286 45690835 -116909095 - MER77 LTR ERV1 -4 601 54 676 194 52 19 chrX 45693328 45693483 -116906447 + MLT1A2 LTR MaLR 2 161 -213 219 69 0 0 chrX 45695032 45695061 -116904869 + (T)n Simple_repeat Simple_repeat 1 29 0 320 330 113 16 chrX 45697204 45697398 -116902532 - L1MC4 LINE L1 -420 7622 7410 216 293 111 30 chrX 45697403 45697601 -116902329 + L2 LINE L2 2647 2860 -454 207 139 0 0 chrX 45697997 45698033 -116901897 + (TG)n Simple_repeat Simple_repeat 2 37 0 2347 95 0 0 chrX 45698485 45698780 -116901150 - AluY SINE Alu -16 295 1 2693 157 46 14 chrX 45698780 45699337 -116900593 + LTR49 LTR ERV1 18 595 0 3628 171 75 18 chrX 45699338 45700076 -116899854 + LTR49-int LTR ERV1 1 780 -5551 2268 157 74 36 chrX 45700217 45700421 -116899509 + LTR49-int LTR ERV1 782 977 -5354 4232 52 2 0 chrX 45700421 45700972 -116898958 + L1PA7 LINE L1 5618 6169 0 2268 157 74 36 chrX 45700972 45701294 -116898636 + LTR49-int LTR ERV1 977 1329 -5002 1148 200 20 54 chrX 45701304 45701599 -116898331 + LTR49-int LTR ERV1 1982 2266 -2614 516 285 45 58 chrX 45701643 45701885 -116898045 + LTR49-int LTR ERV1 1865 2303 -3643 467 202 48 58 chrX 45701895 45702099 -116897831 + LTR49-int LTR ERV1 1150 3129 -3202 * 647 247 41 26 chrX 45702056 45702327 -116897603 + LTR57-int LTR ERVL 1236 1510 -3833 245 108 0 0 chrX 45702550 45702587 -116897343 + LTR49 LTR ERV1 175 211 -384 1960 187 78 2 chrX 45702933 45703329 -116896601 + MSTB LTR MaLR 1 426 0 2112 178 83 4 chrX 45703559 45704038 -116895892 + L1MB3 LINE L1 5639 6155 -28 1398 194 42 8 chrX 45704059 45704365 -116895565 + L1MB5 LINE L1 5817 6132 -48 2330 75 3 0 chrX 45704365 45704667 -116895263 + L1PA8 LINE L1 5858 6163 -9 1398 194 42 8 chrX 45704667 45704703 -116895227 + L1MB5 LINE L1 6132 6165 -15 1484 231 63 43 chrX 45705275 45705764 -116894166 - MER21B LTR ERV1 -48 815 317 4053 179 33 48 chrX 45706805 45707773 -116892157 - LTR13 LTR ERVK 0 954 1 1781 200 49 92 chrX 45708611 45709186 -116890744 - MLT2B3 LTR ERVL 0 554 5 22 35 0 0 chrX 45710175 45710204 -116889726 + AT_rich Low_complexity Low_complexity 1 29 0 386 301 59 0 chrX 45710442 45710681 -116889249 - L1ME3A LINE L1 -223 5947 5695 919 180 101 0 chrX 45710724 45710952 -116888978 + Tigger6 DNA MER2_type 1347 1597 0 349 301 6 26 chrX 45711022 45711178 -116888752 - L1ME3A LINE L1 -1501 4645 4493 394 154 0 0 chrX 45711211 45711276 -116888654 - MLT1C-int LTR MaLR -1306 65 1 1707 180 123 26 chrX 45711277 45711700 -116888230 - MLT1C LTR MaLR -3 464 1 404 269 24 42 chrX 45711783 45711950 -116887980 + LTR41 LTR ERVL 9 172 -601 280 174 43 29 chrX 45712615 45712684 -116887246 + LTR41 LTR ERVL 695 764 -9 675 314 110 15 chrX 45712833 45713689 -116886241 - L1ME3A LINE L1 -1878 4268 3332 478 238 116 53 chrX 45713934 45714237 -116885693 - L1M4 LINE L1 -1426 4720 4399 1057 313 12 26 chrX 45714374 45714802 -116885128 + L1M3a LINE L1 1 422 -5533 339 274 55 38 chrX 45715021 45715312 -116884618 + L1M3a LINE L1 317 704 -5251 239 364 6 12 chrX 45715297 45715459 -116884471 + L1M3a LINE L1 544 704 -5251 * 2285 279 35 36 chrX 45715441 45716402 -116883528 + L1MA7 LINE L1 302 1175 -4780 820 206 39 26 chrX 45716400 45716633 -116883297 + L1MA7 LINE L1 2016 2251 -3783 * 3208 180 13 14 chrX 45716637 45717327 -116882603 + L1MA7 LINE L1 3670 4358 -1676 * 4691 140 35 55 chrX 45717295 45718615 -116881315 + L1MA7 LINE L1 4888 6175 -4 327 285 33 40 chrX 45719125 45719276 -116880654 + L1ME2 LINE L1 5734 5883 -281 316 306 52 47 chrX 45719385 45719578 -116880352 + L1MC4a LINE L1 5860 6053 -1755 362 274 33 75 chrX 45719666 45719878 -116880052 + HAL1b LINE L1 1109 1311 -37 326 297 65 31 chrX 45720108 45720337 -116879593 + L1 LINE L1 4020 4256 -1890 572 117 48 0 chrX 45720346 45720449 -116879481 - L1MA9 LINE L1 0 7731 7624 2480 141 39 5 chrX 45720449 45720861 -116879069 - MSTB LTR MaLR 0 426 1 8734 158 33 16 chrX 45720874 45722484 -116877446 - MSTB-int LTR MaLR -14 1637 1 2404 158 39 5 chrX 45722484 45722896 -116877034 - MSTB LTR MaLR 0 426 1 4065 160 42 23 chrX 45722896 45722941 -116876989 - L1MA9 LINE L1 -103 7628 7585 186 43 0 0 chrX 45722941 45722964 -116876966 + (TG)n Simple_repeat Simple_repeat 2 24 0 4065 160 42 23 chrX 45722964 45723365 -116876565 - L1MA9 LINE L1 -146 7585 7193 1465 191 44 44 chrX 45723365 45723706 -116876224 - MER2 DNA MER2_type -2 342 2 4065 160 42 23 chrX 45723706 45724115 -116875815 - L1MA9 LINE L1 -538 7193 6756 1944 154 73 18 chrX 45724139 45724482 -116875448 - THE1B LTR MaLR -2 362 1 11443 88 17 8 chrX 45724483 45726048 -116873882 - THE1B-int LTR MaLR -1 1579 1 559 147 0 11 chrX 45726048 45726143 -116873787 - THE1B LTR MaLR 0 375 282 378 0 0 21 chrX 45726128 45726176 -116873754 - THE1C LTR MaLR -328 47 1 * 2487 184 90 8 chrX 45726176 45726786 -116873144 - L1MA9 LINE L1 -811 6754 6095 263 175 0 0 chrX 45726839 45726902 -116873028 - L1MA9 LINE L1 -1826 5739 5677 699 226 0 0 chrX 45726921 45727054 -116872876 + FLAM_C SINE Alu 1 133 0 3015 250 47 24 chrX 45727079 45728508 -116871422 - L1MA9 LINE L1 -2928 4637 3157 2001 154 3 0 chrX 45728508 45728801 -116871129 - AluSx SINE Alu -16 296 3 3015 250 47 24 chrX 45728801 45729171 -116870759 - L1MA9 LINE L1 -4408 3157 2797 4457 178 26 31 chrX 45729258 45730358 -116869572 + L1 LINE L1 4302 5396 -750 * 8160 43 20 2 chrX 45730353 45730448 -116869482 - L1PA14 LINE L1 -1034 5112 5020 6060 88 16 15 chrX 45730448 45730809 -116869121 + L1PA14 LINE L1 5130 5489 -672 2296 101 0 3 chrX 45730809 45731107 -116868823 + AluY SINE Alu 1 297 -14 6060 88 16 15 chrX 45731107 45731776 -116868154 + L1PA14 LINE L1 5489 6161 0 8160 43 20 2 chrX 45731776 45732758 -116867172 - L1PA3 LINE L1 -1126 5020 4015 7807 19 0 0 chrX 45732759 45733925 -116866005 + L1PA3 LINE L1 4990 6155 0 2070 232 98 42 chrX 45733932 45734803 -116865127 + L1ME LINE L1 1631 2455 -4085 2507 60 3 0 chrX 45734803 45735104 -116864826 + AluY SINE Alu 1 302 -9 2070 232 98 42 chrX 45735104 45735312 -116864618 + L1ME LINE L1 2455 2650 -3890 2441 124 0 16 chrX 45735348 45735718 -116864212 + THE1B LTR MaLR 1 364 0 10229 98 49 38 chrX 45735718 45737282 -116862648 + THE1B-int LTR MaLR 1 1580 0 2119 130 28 14 chrX 45737282 45737635 -116862295 + THE1B LTR MaLR 1 358 -6 541 178 116 39 chrX 45737648 45737777 -116862153 + MSTD LTR MaLR 258 396 0 349 325 136 53 chrX 45737847 45738281 -116861649 + L1M4 LINE L1 3769 4238 -1908 23 33 0 0 chrX 45739190 45739220 -116860710 + AT_rich Low_complexity Low_complexity 1 30 0 1785 160 0 42 chrX 45739541 45739847 -116860083 - AluJb SINE Alu -19 293 1 338 284 32 6 chrX 45739874 45740056 -116859874 + HAL1b LINE L1 339 1606 -827 1030 154 6 0 chrX 45740137 45740319 -116859611 - L1MB1 LINE L1 -1 6167 5985 1738 175 21 16 chrX 45740325 45740702 -116859228 - L1MB1 LINE L1 -232 5936 5558 1309 177 7 4 chrX 45740715 45741088 -116858842 + L1M3 LINE L1 5118 5492 -676 371 180 11 11 chrX 45741089 45741178 -116858752 + L1ME LINE L1 3033 3121 -3419 303 213 7 53 chrX 45741527 45741677 -116858253 - L1MC5 LINE L1 -184 7777 7635 7575 24 5 0 chrX 45742256 45743629 -116856301 + L1PA4 LINE L1 4771 6147 -8 921 223 14 105 chrX 45743812 45743957 -116855973 + L1ME LINE L1 5736 5893 -671 2178 113 10 0 chrX 45743957 45744259 -116855671 + AluY SINE Alu 1 305 -6 921 223 14 105 chrX 45744259 45744476 -116855454 + L1ME LINE L1 5893 6065 -499 334 302 39 82 chrX 45745079 45745336 -116854594 + L2 LINE L2 2743 3009 -304 219 234 32 75 chrX 45745480 45745574 -116854356 + L2 LINE L2 3178 3267 -5 404 277 80 100 chrX 45746088 45746199 -116853731 + L2 LINE L2 2815 2927 -386 9965 172 25 25 chrX 45746199 45747588 -116852342 - L1PA14 LINE L1 -17 6144 4758 2128 133 3 0 chrX 45747588 45747897 -116852033 - AluSx SINE Alu -2 310 1 9965 172 25 25 chrX 45747897 45749393 -116850537 - L1PA14 LINE L1 -1403 4758 3243 404 277 80 100 chrX 45749393 45749692 -116850238 + L2 LINE L2 2927 3217 -96 460 353 92 28 chrX 45750034 45750065 -116849865 + L2 LINE L2 2633 2661 -653 3156 44 7 7 chrX 45750065 45750471 -116849459 + L1PA7 LINE L1 5749 6154 0 460 353 92 28 chrX 45750471 45750756 -116849174 + L2 LINE L2 2661 2969 -345 213 277 15 31 chrX 45750897 45750962 -116848968 + L2 LINE L2 3208 3271 -1 204 339 0 9 chrX 45751126 45751238 -116848692 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 265 226 9 9 chrX 45751252 45751358 -116848572 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 442 339 6 0 chrX 45751435 45751612 -116848318 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 305 224 8 67 chrX 45752581 45752715 -116847215 + CT-rich Low_complexity Low_complexity 4 129 0 326 185 23 31 chrX 45752728 45752858 -116847072 + CT-rich Low_complexity Low_complexity 5 133 0 1644 130 0 16 chrX 45753332 45753586 -116846344 - MER1B DNA MER1_type -89 250 1 281 309 72 10 chrX 45753874 45754068 -116845862 - L1ME LINE L1 -419 5702 5497 301 345 28 14 chrX 45754084 45754226 -116845704 - MIR SINE MIR -101 161 18 2187 110 44 47 chrX 45754790 45755155 -116844775 - THE1B LTR MaLR 0 364 1 546 318 43 35 chrX 45755863 45756118 -116843812 + MIR SINE MIR 2 258 -4 3751 31 0 0 chrX 45756806 45757287 -116842643 - L1PA4 LINE L1 -794 5352 4872 6871 21 0 1 chrX 45757287 45758122 -116841808 + L1PA4 LINE L1 5355 6155 0 1439 176 16 64 chrX 45758253 45758629 -116841301 - LTR49-int LTR ERV1 -3307 3024 2667 371 159 0 0 chrX 45758629 45758698 -116841232 - L1PA16 LINE L1 -5 6161 6093 232 297 102 31 chrX 45758966 45759094 -116840836 - L2 LINE L2 -10 3303 3167 196 287 178 16 chrX 45759148 45759277 -116840653 - MIR SINE MIR -82 180 31 196 222 22 0 chrX 45759984 45760029 -116839901 + MIR SINE MIR 67 112 -150 28 0 0 0 chrX 45760159 45760187 -116839743 + AT_rich Low_complexity Low_complexity 1 28 0 2095 66 103 0 chrX 45760837 45761108 -116838822 + AluSp SINE Alu 1 299 -14 402 273 142 6 chrX 45761429 45761612 -116838318 + LTR40c LTR ERVL 152 359 -106 565 253 86 0 chrX 45762126 45762288 -116837642 - MIR SINE MIR -22 240 65 26 50 0 0 chrX 45762494 45762534 -116837396 + AT_rich Low_complexity Low_complexity 1 40 0 256 293 29 29 chrX 45762857 45762997 -116836933 + L2 LINE L2 2839 2978 -294 2138 181 56 52 chrX 45763419 45763917 -116836013 + MLT1D LTR MaLR 5 504 -1 661 118 31 16 chrX 45763918 45764045 -116835885 + MLT1D-int LTR MaLR 1 129 -1242 276 267 23 0 chrX 45764049 45764135 -116835795 + MLT1D-int LTR MaLR 1260 1347 -24 1716 177 79 48 chrX 45764139 45764557 -116835373 + MLT1D LTR MaLR 1 431 -74 22 0 0 0 chrX 45764931 45764953 -116834977 + AT_rich Low_complexity Low_complexity 1 22 0 2324 173 11 11 chrX 45765116 45765556 -116834374 + L1M1 LINE L1 2 441 -6768 11985 211 43 40 chrX 45765609 45767443 -116832487 + L1M1 LINE L1 1231 3057 -4308 1774 179 0 52 chrX 45767443 45767767 -116832163 + AluJo SINE Alu 3 309 -3 11985 211 43 40 chrX 45767767 45769946 -116829984 + L1M1 LINE L1 3057 5227 -2138 786 154 31 8 chrX 45769946 45770076 -116829854 - FLAM_C SINE Alu 0 133 1 11985 211 43 40 chrX 45770076 45770575 -116829355 + L1M1 LINE L1 5227 5723 -1642 569 157 0 22 chrX 45770575 45770664 -116829266 + AluS SINE Alu 2 88 -225 11985 211 43 40 chrX 45770664 45771603 -116828327 + L1M1 LINE L1 5723 6867 -498 1458 173 83 0 chrX 45771603 45771881 -116828049 + MSTB LTR MaLR 1 301 -125 1666 195 96 6 chrX 45771883 45772247 -116827683 - MSTB LTR MaLR -29 397 1 3924 217 71 4 chrX 45772251 45773168 -116826762 - L1M2 LINE L1 -5093 1756 779 2125 223 23 19 chrX 45773295 45773708 -116826222 - L1M2 LINE L1 -6362 487 70 2181 139 19 14 chrX 45773708 45774068 -116825862 + THE1B LTR MaLR 1 362 -2 2125 223 23 19 chrX 45774068 45774139 -116825791 - L1M2 LINE L1 -6779 70 1 * 11907 197 40 12 chrX 45774129 45775958 -116823972 + L1MA9 LINE L1 2121 3898 -2414 17244 29 0 1 chrX 45775958 45778797 -116821133 + L1PA3 LINE L1 3319 6155 0 11907 197 40 12 chrX 45778797 45781036 -116818894 + L1MA9 LINE L1 3898 6312 0 1670 257 206 9 chrX 45781038 45781922 -116818008 - L1MEc LINE L1 -1578 4637 3580 198 0 0 0 chrX 45781922 45781944 -116817986 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6281 26 0 3 chrX 45781944 45782720 -116817210 - L1PA3 LINE L1 -18 6137 5364 1852 259 85 30 chrX 45782715 45783205 -116816725 - L1MEc LINE L1 -2636 3579 3117 * 243 0 0 0 chrX 45783205 45783232 -116816698 + (TA)n Simple_repeat Simple_repeat 2 28 0 2232 79 0 4 chrX 45783231 45783538 -116816392 - AluSc SINE Alu 0 306 1 1852 259 85 30 chrX 45783538 45784041 -116815889 - L1MEc LINE L1 -3404 2811 2530 646 282 50 31 chrX 45784068 45784525 -116815405 - L1MEc LINE L1 -4706 1690 1225 2477 288 56 7 chrX 45784527 45785506 -116814424 - L1MEc LINE L1 -5223 1173 147 189 267 100 44 chrX 45785512 45785602 -116814328 + L2 LINE L2 3149 3243 -70 180 280 64 56 chrX 45785640 45785765 -116814165 - MIR SINE MIR -72 190 65 352 291 39 0 chrX 45787089 45787192 -116812738 - L2 LINE L2 -30 3242 3136 239 246 0 0 chrX 45787662 45787723 -116812207 - L2 LINE L2 -56 3257 3197 11361 22 0 0 chrX 45788797 45790897 -116809033 - L1PA3 LINE L1 -4 6151 4063 911 212 24 9 chrX 45791035 45791247 -116808683 + L1M4 LINE L1 4 218 -6324 * 1425 193 14 14 chrX 45791240 45791597 -116808333 + L1M4 LINE L1 1011 1367 -5175 * 30181 35 4 2 chrX 45791596 45797666 -116802264 + L1PA3 LINE L1 74 6155 0 1752 219 67 43 chrX 45797643 45798290 -116801640 + L1M4 LINE L1 826 1487 -4661 * 846 286 47 20 chrX 45798313 45798865 -116801065 + L1M4 LINE L1 2180 2746 -3900 277 284 0 0 chrX 45798898 45798993 -116800937 + L1M4 LINE L1 4617 4711 -1435 1914 238 7 2 chrX 45799045 45799588 -116800342 + L1M4 LINE L1 2752 3297 -3347 * 4079 214 34 19 chrX 45799582 45801351 -116798579 + L1M4 LINE L1 4500 6290 -392 1369 210 70 21 chrX 45801353 45801738 -116798192 - LTR52 LTR ERVL -5 416 13 1152 209 173 9 chrX 45801775 45802333 -116797597 + LTR50 LTR ERVL 4 751 -44 3349 199 68 2 chrX 45802382 45803432 -116796498 - LTR52-int LTR ERVL -23 3533 2368 1815 183 6 11 chrX 45803437 45803786 -116796144 + MLT2C1 LTR ERVL 3 349 -48 389 217 0 17 chrX 45803805 45803920 -116796010 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 35 0 0 0 chrX 45803942 45803977 -116795953 + AT_rich Low_complexity Low_complexity 1 35 0 384 22 0 0 chrX 45803989 45804034 -116795896 + (CA)n Simple_repeat Simple_repeat 2 46 0 1816 190 20 11 chrX 45804035 45804387 -116795543 - LTR52-int LTR ERVL -1656 1900 1546 893 206 59 9 chrX 45804595 45804814 -116795116 - LTR52-int LTR ERVL -1999 1557 1328 269 149 21 0 chrX 45804911 45804958 -116794972 + LTR52-int LTR ERVL 1348 1395 -2161 53 17 0 0 chrX 45804981 45805041 -116794889 + AT_rich Low_complexity Low_complexity 1 60 0 771 95 29 0 chrX 45805068 45805314 -116794616 + (TA)n Simple_repeat Simple_repeat 1 253 0 3017 67 9 6 chrX 45805314 45805729 -116794201 - MLT2A1 LTR ERVL -34 481 1 1050 179 52 68 chrX 45805729 45806097 -116793833 - LTR52-int LTR ERVL -2218 1338 977 204 40 0 0 chrX 45806097 45806122 -116793808 + (TC)n Simple_repeat Simple_repeat 2 26 0 1064 167 25 10 chrX 45806149 45806347 -116793583 - LTR52-int LTR ERVL -2580 976 776 * 2607 181 41 65 chrX 45806344 45807025 -116792905 - LTR52-int LTR ERVL -2889 667 3 1140 177 164 35 chrX 45807026 45807393 -116792537 - LTR52 LTR ERVL -5 416 3 1845 192 10 16 chrX 45807393 45807779 -116792151 + L1MB7 LINE L1 5787 6170 -14 220 255 234 0 chrX 45807857 45807951 -116791979 + L2 LINE L2 3198 3313 0 265 254 92 49 chrX 45808081 45808223 -116791707 - L1ME4a LINE L1 -28 6093 5946 676 281 18 9 chrX 45808353 45808574 -116791356 - L1ME3A LINE L1 -5 6165 5943 185 0 0 39 chrX 45808728 45808754 -116791176 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 9403 30 0 200 chrX 45808760 45810501 -116789429 + SVA Other Other 1 1400 0 922 254 40 12 chrX 45810549 45810876 -116789054 + L1MDa LINE L1 75 410 -6130 270 288 38 0 chrX 45811220 45811300 -116788630 + L1MDa LINE L1 785 867 -5673 3003 222 76 46 chrX 45811681 45812737 -116787193 + L1MDa LINE L1 847 1870 -4670 801 113 8 0 chrX 45812737 45812870 -116787060 + L1MA4 LINE L1 6156 6289 -11 3003 222 76 46 chrX 45812870 45813268 -116786662 + L1MDa LINE L1 1870 2322 -4218 2220 113 0 0 chrX 45813268 45813559 -116786371 - AluSx SINE Alu -21 291 1 3003 222 76 46 chrX 45813559 45813758 -116786172 + L1MDa LINE L1 2322 2514 -4026 869 257 50 29 chrX 45813792 45814248 -116785682 - L1M4 LINE L1 -2739 3407 2942 10195 179 53 22 chrX 45814248 45816594 -116783336 - L1MC3 LINE L1 -13 7772 5355 32 43 0 0 chrX 45817623 45817669 -116782261 + AT_rich Low_complexity Low_complexity 1 46 0 189 74 0 0 chrX 45817826 45817853 -116782077 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 216 260 27 0 chrX 45817959 45818032 -116781898 + MIR SINE MIR 188 262 0 341 283 191 7 chrX 45818345 45818497 -116781433 + L2 LINE L2 3130 3309 -4 604 36 12 0 chrX 45818702 45818786 -116781144 - L1PA3 LINE L1 0 6155 6071 * 7409 28 0 0 chrX 45818773 45820418 -116779512 + L1PA6 LINE L1 4511 6154 0 453 267 67 33 chrX 45821368 45821548 -116778382 + MIR SINE MIR 45 230 -32 365 303 55 30 chrX 45822555 45822720 -116777210 + MIR SINE MIR 46 214 -48 222 351 69 23 chrX 45823135 45823266 -116776664 - L2 LINE L2 0 3272 3136 933 235 41 99 chrX 45823268 45823885 -116776045 - L2 LINE L2 0 3313 2737 335 281 100 12 chrX 45824719 45824873 -116775057 - MIR SINE MIR -61 147 2 214 235 204 20 chrX 45825422 45825520 -116774410 + MIR SINE MIR 32 147 -115 6181 40 1 7 chrX 45825925 45826678 -116773252 + L1PA5 LINE L1 5401 6149 -5 3347 84 76 2 chrX 45826678 45827189 -116772741 + L1MA2 LINE L1 5754 6304 0 24 32 0 0 chrX 45827189 45827220 -116772710 + AT_rich Low_complexity Low_complexity 1 31 0 243 269 71 28 chrX 45827284 45827425 -116772505 + MIR SINE MIR 108 254 -8 18921 155 38 40 chrX 45827664 45830118 -116769812 + L1MA3 LINE L1 10 2468 -5097 2123 119 0 0 chrX 45830118 45830421 -116769509 + AluSc SINE Alu 1 303 0 18921 155 38 40 chrX 45830421 45832311 -116767619 + L1MA3 LINE L1 2468 4351 -3214 1982 145 3 10 chrX 45832311 45832607 -116767323 + AluSq SINE Alu 1 294 -19 18921 155 38 40 chrX 45832607 45833023 -116766907 + L1MA3 LINE L1 4351 4766 -2799 1756 195 15 0 chrX 45833019 45833425 -116766505 + L1MA3 LINE L1 6306 6717 -848 * 4269 122 40 4 chrX 45833422 45834153 -116765777 + L1MA3 LINE L1 6942 7698 -26 2067 120 6 32 chrX 45834157 45834473 -116765457 - AluSx SINE Alu -4 308 1 260 302 71 16 chrX 45834499 45834625 -116765305 - MLT1H LTR MaLR -96 453 321 1528 173 126 24 chrX 45834686 45835234 -116764696 + L1ME1 LINE L1 5090 5672 -494 794 125 0 0 chrX 45835236 45835364 -116764566 + MSTB2 LTR MaLR 1 128 -329 16790 196 74 13 chrX 45835364 45839082 -116760848 - L1PA13 LINE L1 -844 5953 1701 1879 138 44 10 chrX 45839082 45839378 -116760552 - AluSx SINE Alu -6 306 1 16790 196 74 13 chrX 45839378 45841189 -116758741 - L1PA13 LINE L1 -5096 1701 1 439 119 0 0 chrX 45841198 45841265 -116758665 + MSTB2 LTR MaLR 391 457 0 1200 248 42 38 chrX 45841285 45841756 -116758174 + L1ME1 LINE L1 5690 6162 -4 306 369 0 6 chrX 45841760 45841920 -116758010 + L1ME1 LINE L1 6007 6165 -1 283 232 0 0 chrX 45842173 45842229 -116757701 - L2 LINE L2 -2 3311 3256 7619 24 2 0 chrX 45842367 45844019 -116755911 + L1PA4 LINE L1 4494 6147 -8 423 282 61 8 chrX 45844716 45844847 -116755083 + L2 LINE L2 3172 3309 -4 328 274 10 39 chrX 45844991 45845093 -116754837 + MIR SINE MIR 37 135 -73 419 291 112 15 chrX 45845138 45845272 -116754658 - L2 LINE L2 -1 3271 3125 261 0 0 0 chrX 45845640 45845669 -116754261 + (TTA)n Simple_repeat Simple_repeat 1 29 0 208 342 71 13 chrX 45845711 45845866 -116754064 - MIR SINE MIR -32 230 67 1181 241 26 3 chrX 45845879 45846186 -116753744 + L1MC4 LINE L1 6774 7087 -955 2198 157 28 41 chrX 45846208 45846780 -116753150 + MLT2A2 LTR ERVL 1 554 0 260 143 0 20 chrX 45846782 45846831 -116753099 + L1MC4 LINE L1 7099 7146 -896 2738 155 43 26 chrX 45846839 45846979 -116752951 + L1MA8 LINE L1 5688 5824 -467 1727 189 3 0 chrX 45846979 45847276 -116752654 + AluJo SINE Alu 3 300 -12 2738 155 43 26 chrX 45847276 45847670 -116752260 + L1MA8 LINE L1 5824 6231 -60 345 285 39 31 chrX 45847679 45847809 -116752121 + MIR SINE MIR 122 252 -10 287 351 18 0 chrX 45848233 45848344 -116751586 - MIR SINE MIR -83 179 67 200 289 99 66 chrX 45848430 45848551 -116751379 + L2 LINE L2 3178 3302 -11 315 0 0 0 chrX 45849338 45849373 -116750557 + (CA)n Simple_repeat Simple_repeat 2 36 0 370 343 106 26 chrX 45849451 45849792 -116750138 + MLT1L LTR MaLR 149 516 -99 3070 286 80 45 chrX 45849818 45851089 -116748841 - L2 LINE L2 -14 3299 1974 2065 116 4 0 chrX 45851089 45851366 -116748564 - AluSq SINE Alu -27 286 9 3070 286 80 45 chrX 45851366 45851734 -116748196 - L2 LINE L2 -1339 1974 1620 204 67 0 0 chrX 45851813 45851843 -116748087 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 232 178 206 0 chrX 45851887 45851960 -116747970 - MER94 DNA DNA -42 92 5 398 327 131 19 chrX 45851966 45852180 -116747750 + MIR SINE MIR 15 252 -10 514 165 11 0 chrX 45852416 45852507 -116747423 + MLT2B1 LTR ERVL 1 92 -428 * 706 228 54 0 chrX 45852506 45852655 -116747275 + MLT1E1 LTR MaLR 498 654 0 246 136 0 0 chrX 45853188 45853232 -116746698 + (TG)n Simple_repeat Simple_repeat 2 45 0 474 272 136 0 chrX 45854476 45854667 -116745263 + MIR SINE MIR 45 261 -1 272 309 55 36 chrX 45855697 45855862 -116744068 + MIR SINE MIR 46 213 -49 209 344 69 23 chrX 45856328 45856459 -116743471 - L2 LINE L2 0 3272 3136 745 255 62 94 chrX 45856461 45857146 -116742784 - L2 LINE L2 0 3313 2635 291 221 168 11 chrX 45857907 45858002 -116741928 - MIR SINE MIR -100 162 53 182 250 0 19 chrX 45858599 45858651 -116741279 + MIR SINE MIR 32 82 -180 539 221 55 180 chrX 45859438 45859944 -116739986 - MLT1H LTR MaLR -5 544 102 2461 164 73 0 chrX 45860151 45860548 -116739382 - MSTA LTR MaLR -2 426 1 1833 86 4 31 chrX 45861038 45861313 -116738617 + AluSg SINE Alu 35 302 0 209 186 0 0 chrX 45863243 45863286 -116736644 + G-rich Low_complexity Low_complexity 1 43 0 2328 65 41 0 chrX 45864535 45864825 -116735105 + AluSg SINE Alu 1 302 -8 263 367 33 8 chrX 45865349 45865469 -116734461 + L2 LINE L2 3107 3229 -43 227 150 0 0 chrX 45865652 45865692 -116734238 + L2 LINE L2 3274 3313 0 202 418 25 0 chrX 45865975 45866097 -116733833 + L2 LINE L2 3136 3260 -12 1881 201 99 48 chrX 45866267 45866316 -116733614 + L1MC5 LINE L1 7249 7294 -667 596 218 100 0 chrX 45866316 45866426 -116733504 + FLAM_A SINE Alu 1 121 -12 1881 201 99 48 chrX 45866426 45867023 -116732907 + L1MC5 LINE L1 7294 7928 -33 2597 48 0 0 chrX 45868011 45868306 -116731624 - AluY SINE Alu -16 295 1 305 282 0 0 chrX 45868432 45868517 -116731413 + MIR SINE MIR 80 164 -98 1709 182 4 0 chrX 45868580 45868860 -116731070 - AluJo SINE Alu -31 281 1 2811 208 37 0 chrX 45869494 45870008 -116729922 - REP3 LTR ERV -29 533 1 1943 204 41 24 chrX 45870065 45870476 -116729454 - LTR52 LTR ERVL -3 418 1 5908 239 42 9 chrX 45870476 45871738 -116728192 - LTR52-int LTR ERVL 0 3556 2253 3736 202 19 47 chrX 45871757 45872677 -116727253 - LTR52-int LTR ERVL -1417 2139 1318 1349 217 30 30 chrX 45872685 45873017 -116726913 - MLT2D LTR ERVL 0 414 83 677 200 97 6 chrX 45873017 45873039 -116726891 - Ricksha DNA DNA -2871 375 338 17059 162 101 75 chrX 45873039 45874389 -116725541 - ERVL-D LTR ERVL 0 5764 4449 2391 109 78 62 chrX 45874389 45874810 -116725120 + MSTC LTR MaLR 1 428 0 17059 162 101 75 chrX 45874810 45875563 -116724367 - ERVL-D LTR ERVL -1315 4449 3716 231 61 0 0 chrX 45875563 45875596 -116724334 + (CA)n Simple_repeat Simple_repeat 2 34 0 17059 162 101 75 chrX 45875596 45875863 -116724067 - ERVL-D LTR ERVL -2048 3716 3457 2238 139 73 14 chrX 45875863 45876207 -116723723 - THE1B LTR MaLR 0 364 1 17059 162 101 75 chrX 45876207 45876313 -116723617 - ERVL-D LTR ERVL -2307 3457 3355 802 206 67 31 chrX 45876313 45876536 -116723394 - L1MA9 LINE L1 -87 6225 5995 17059 162 101 75 chrX 45876536 45877235 -116722695 - ERVL-D LTR ERVL -2409 3355 2675 2487 104 44 14 chrX 45877235 45877599 -116722331 - THE1C LTR MaLR 0 375 1 17059 162 101 75 chrX 45877599 45878186 -116721744 - ERVL-D LTR ERVL -3089 2675 1676 508 186 0 0 chrX 45878186 45878272 -116721658 - MLT1A2 LTR MaLR 0 374 289 524 345 67 66 chrX 45879212 45880453 -116719477 - HERVL40 LTR ERVL -1450 4080 2841 1512 185 60 65 chrX 45880453 45880820 -116719110 + MLT1A1 LTR MaLR 1 365 0 524 345 67 66 chrX 45880820 45881031 -116718899 - HERVL40 LTR ERVL -2689 2841 2624 2382 106 66 23 chrX 45881031 45881380 -116718550 - THE1B LTR MaLR 0 364 1 524 345 67 66 chrX 45881380 45881454 -116718476 - HERVL40 LTR ERVL -2906 2624 2552 2280 169 119 28 chrX 45881841 45882304 -116717626 - MLT1D LTR MaLR 0 505 1 282 324 72 9 chrX 45883755 45883866 -116716064 - HERVL40 LTR ERVL -1848 3682 3565 420 213 62 0 chrX 45884033 45884113 -116715817 - HERVL40 LTR ERVL -3337 2193 2109 3007 213 43 0 chrX 45884860 45885396 -116714534 - REP3 LTR ERV 0 562 4 24 0 0 0 chrX 45886035 45886059 -116713871 + AT_rich Low_complexity Low_complexity 1 24 0 32 26 0 0 chrX 45886089 45886128 -116713802 + AT_rich Low_complexity Low_complexity 1 39 0 7744 45 5 0 chrX 45886708 45887742 -116712188 + L1PA6 LINE L1 5106 6143 -11 3076 150 26 19 chrX 45887886 45888427 -116711503 - LTR24B LTR ERV1 -9 567 23 358 279 0 19 chrX 45888539 45888643 -116711287 - LTR24B-int LTR ERV1 -15 5108 5007 1172 314 69 58 chrX 45889010 45890069 -116709861 - HERVR LTR ERV1 -419 6703 5633 260 264 0 14 chrX 45890366 45890438 -116709492 - HERVR LTR ERV1 -1949 4727 4657 21562 127 8 28 chrX 45890463 45892066 -116707864 + L1PA8A LINE L1 2 1636 -4810 2227 76 7 30 chrX 45892066 45892367 -116707563 + AluY SINE Alu 1 294 -17 21562 127 8 28 chrX 45892367 45897278 -116702652 + L1PA8A LINE L1 1636 6443 -3 17752 155 45 19 chrX 45897287 45904786 -116695144 + L1MA1 LINE L1 16 7714 -7 535 334 24 29 chrX 45904977 45905390 -116694540 - HERVR LTR ERV1 -2090 2557 2147 292 267 67 47 chrX 45906031 45906181 -116693749 - HERVR LTR ERV1 -3175 4217 4065 4653 209 38 28 chrX 45907932 45909320 -116690610 + L1MB2 LINE L1 2985 4386 -1760 21 57 0 0 chrX 45909325 45909360 -116690570 + AT_rich Low_complexity Low_complexity 1 35 0 1664 175 49 80 chrX 45909379 45909618 -116690312 + L1MB2 LINE L1 4899 5144 -1027 1809 61 0 0 chrX 45909618 45909831 -116690099 + AluY SINE Alu 1 213 -98 1664 175 49 80 chrX 45909831 45910391 -116689539 + L1MB2 LINE L1 5144 5668 -503 1385 158 36 39 chrX 45910438 45910768 -116689162 + L1MA9 LINE L1 5950 6278 -34 2752 145 32 4 chrX 45910772 45911276 -116688654 + L1MB2 LINE L1 5652 6169 -2 7009 201 9 14 chrX 45911379 45913084 -116686846 + L1 LINE L1 3620 5316 -830 4518 108 46 8 chrX 45913083 45913821 -116686109 + L1PA16 LINE L1 5392 6157 -9 * 4132 174 12 27 chrX 45913875 45914635 -116685295 - L1MA4 LINE L1 -11 6289 5519 1913 157 21 26 chrX 45914635 45915012 -116684918 - THE1C LTR MaLR 0 375 1 9947 118 40 9 chrX 45915020 45916550 -116683380 - THE1C-int LTR MaLR -2 1578 1 1955 119 32 37 chrX 45916550 45916927 -116683003 - THE1C LTR MaLR 0 375 1 4132 174 12 27 chrX 45916927 45916999 -116682931 - L1MA4 LINE L1 -786 5514 5460 5597 119 20 1 chrX 45916999 45918591 -116681339 + L1PA13 LINE L1 4554 6162 -1 261 105 0 0 chrX 45918591 45918629 -116681301 - L1MA4 LINE L1 -825 5475 5438 * 10204 153 47 10 chrX 45918627 45921852 -116678078 + L1MA3 LINE L1 2957 6305 0 226 315 96 0 chrX 45922869 45922942 -116676988 + L2 LINE L2 3107 3186 -86 190 264 42 28 chrX 45923076 45923148 -116676782 + MIR SINE MIR 32 104 -158 550 311 33 16 chrX 45923195 45923443 -116676487 + MIR SINE MIR 8 262 0 180 254 30 30 chrX 45923449 45923516 -116676414 + MIR SINE MIR 136 202 -60 2025 119 10 14 chrX 45923660 45923955 -116675975 + AluSq SINE Alu 1 294 -19 184 304 0 114 chrX 45924029 45924108 -116675822 + MIR SINE MIR 7 76 -186 536 253 7 14 chrX 45924295 45924441 -116675489 + MIR SINE MIR 24 168 -94 214 290 110 30 chrX 45924803 45924903 -116675027 + L2 LINE L2 3122 3229 -43 197 65 32 0 chrX 45924974 45925005 -116674925 + (TA)n Simple_repeat Simple_repeat 2 33 0 195 266 55 73 chrX 45925067 45925176 -116674754 - MIR SINE MIR -111 151 45 281 200 0 0 chrX 45926208 45926268 -116673662 - L1MCb LINE L1 -5768 277 218 434 229 72 54 chrX 45926273 45926439 -116673491 - L1MCb LINE L1 -6239 325 157 277 278 15 78 chrX 45926471 45926676 -116673254 + HAL1 LINE L1 2315 2506 -1 345 268 62 0 chrX 45926954 45927051 -116672879 - MIR SINE MIR -99 163 61 30 27 0 0 chrX 45927377 45927414 -116672516 + AT_rich Low_complexity Low_complexity 1 37 0 327 266 114 6 chrX 45927514 45927672 -116672258 + L1M4 LINE L1 3762 3936 -2210 631 273 214 0 chrX 45927736 45928011 -116671919 - MER46C DNA MER2_type -4 334 1 1677 243 35 23 chrX 45928063 45928585 -116671345 - L1ME3A LINE L1 -3 6167 5640 1486 222 127 23 chrX 45928586 45929178 -116670752 + MLT1E3 LTR MaLR 1 615 -9 658 201 20 20 chrX 45929186 45929335 -116670595 + MLT1E3-int LTR MaLR 1 149 -1222 787 231 33 96 chrX 45929340 45929703 -116670227 + MLT1E3-int LTR MaLR 1032 1371 0 795 229 171 24 chrX 45929703 45930250 -116669680 + MLT1E3 LTR MaLR 1 654 0 759 262 95 5 chrX 45930252 45930565 -116669365 - L1ME3A LINE L1 -536 5634 5296 1069 247 84 58 chrX 45930626 45931504 -116668426 - L1ME3A LINE L1 -1011 5135 4235 305 303 55 12 chrX 45931511 45931676 -116668254 - MLT1L LTR MaLR -302 313 142 1868 140 20 17 chrX 45931868 45932160 -116667770 + AluSx SINE Alu 1 293 -19 1933 119 32 0 chrX 45932160 45932438 -116667492 + AluSx SINE Alu 17 303 -9 856 240 53 0 chrX 45932680 45932888 -116667042 - MER20 DNA MER1_type 0 219 1 395 299 78 30 chrX 45933076 45933307 -116666623 - L1ME LINE L1 -367 5754 5513 239 268 116 51 chrX 45933841 45933979 -116665951 + L2 LINE L2 2338 2484 -830 608 234 14 7 chrX 45933983 45934128 -116665802 + MLT1G LTR MaLR 410 555 -35 273 216 10 98 chrX 45934309 45934503 -116665427 + (CATTT)n Simple_repeat Simple_repeat 4 180 0 * 345 172 15 121 chrX 45934485 45934683 -116665247 + (CATTC)n Simple_repeat Simple_repeat 3 179 0 2231 93 0 7 chrX 45934814 45935115 -116664815 + AluSx SINE Alu 1 299 -13 453 304 78 23 chrX 45935126 45935383 -116664547 + L1ME4a LINE L1 5589 5859 -262 22 0 0 0 chrX 45935439 45935461 -116664469 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chrX 45936157 45936189 -116663741 + (CA)n Simple_repeat Simple_repeat 2 33 0 378 265 60 150 chrX 45936865 45937570 -116662360 + L1M2 LINE L1 770 1410 -5439 233 304 147 45 chrX 45939291 45939515 -116660415 + MER115 DNA AcHobo 13 259 -434 382 264 16 47 chrX 45939626 45939755 -116660175 - MIR SINE MIR -82 180 56 * 721 300 30 8 chrX 45939729 45939966 -116659964 + MIR SINE MIR 21 262 0 550 277 25 6 chrX 45940406 45940565 -116659365 - MIR SINE MIR -1 261 100 675 204 127 0 chrX 45941185 45941342 -116658588 + MER45A DNA AcHobo 1 177 -1 497 273 28 14 chrX 45941465 45941608 -116658322 + MIR SINE MIR 24 168 -94 213 259 0 35 chrX 45942160 45942218 -116657712 + L2 LINE L2 3255 3310 -3 403 302 29 7 chrX 45942530 45942669 -116657261 + L2 LINE L2 3172 3313 0 242 197 26 0 chrX 45942960 45943083 -116656847 + CT-rich Low_complexity Low_complexity 1 126 0 2158 200 84 48 chrX 45943110 45943443 -116656487 - L1ME LINE L1 -370 5796 5477 3305 37 2 7 chrX 45943443 45943846 -116656084 + L1PA6 LINE L1 5749 6149 -5 2158 200 84 48 chrX 45943846 45943909 -116656021 - L1ME LINE L1 -689 5477 5418 309 26 0 0 chrX 45943909 45943947 -116655983 + (TG)n Simple_repeat Simple_repeat 2 39 0 1992 111 21 4 chrX 45943947 45944226 -116655704 - AluSx SINE Alu -28 284 1 2158 200 84 48 chrX 45944226 45944977 -116654953 - L1ME LINE L1 -747 5419 4601 * 2358 239 31 38 chrX 45944974 45945800 -116654130 - L1ME1 LINE L1 -5 6161 5341 2938 122 39 4 chrX 45945800 45946258 -116653672 + MER101 LTR ERV1 1 474 0 640 237 14 28 chrX 45946690 45946905 -116653025 - LTR4 LTR ERV1 0 596 385 1802 208 44 40 chrX 45947963 45948667 -116651263 + LTR43-int LTR ERV1 1199 3120 -3211 1021 187 37 79 chrX 45948881 45949469 -116650461 + LTR43-int LTR ERV1 1563 3646 -2685 822 150 20 45 chrX 45949604 45949804 -116650126 + LTR43-int LTR ERV1 3536 3730 -2868 506 155 0 21 chrX 45949936 45950033 -116649897 - LTR1 LTR ERV1 -690 95 1 1334 245 66 12 chrX 45950346 45950798 -116649132 + LTR43-int LTR ERV1 346 862 -3936 3612 190 23 26 chrX 45950799 45951537 -116648393 + LTR43-int LTR ERV1 4063 4798 0 4442 88 3 5 chrX 45951537 45952140 -116647790 + LTR43 LTR ERV1 1 602 0 857 163 163 51 chrX 45952882 45953078 -116646852 + MER20 DNA MER1_type 2 219 0 2725 213 81 23 chrX 45953319 45954111 -116645819 + L1ME1 LINE L1 5325 6162 -4 5672 141 14 2 chrX 45954191 45955182 -116644748 - L1MA4 LINE L1 -1 6299 5297 985 201 5 0 chrX 45955179 45955383 -116644547 - L1MA4 LINE L1 -2475 3671 3467 * 506 253 124 11 chrX 45956578 45956741 -116643189 + MER5A DNA MER1_type 4 187 -2 42476 35 2 1 chrX 45956945 45963096 -116636834 - L1PA3 LINE L1 0 6155 2 296 332 181 19 chrX 45963320 45963525 -116636405 - MIR SINE MIR -17 245 8 1366 172 95 37 chrX 45963711 45963902 -116636028 - L1MD2 LINE L1 -10 6349 6170 225 0 0 0 chrX 45963902 45963927 -116636003 + (TG)n Simple_repeat Simple_repeat 2 26 0 1366 172 95 37 chrX 45963927 45964023 -116635907 - L1MD2 LINE L1 -189 6170 6081 2167 66 0 76 chrX 45964023 45964354 -116635576 - AluSc SINE Alu 0 308 1 1366 172 95 37 chrX 45964354 45964412 -116635518 - L1MD2 LINE L1 -278 6081 5982 781 152 0 7 chrX 45964440 45964578 -116635352 - L1MD2 LINE L1 -652 5707 5571 554 276 52 17 chrX 45965265 45965439 -116634491 - MIR SINE MIR -14 248 69 433 322 101 5 chrX 45965429 45965637 -116634293 + MIR SINE MIR 23 250 -12 * 1322 155 54 0 chrX 45966374 45966632 -116633298 - Charlie1 DNA MER1_type -401 2360 2089 216 211 123 0 chrX 45966634 45966691 -116633239 + MIR SINE MIR 90 153 -109 387 0 0 0 chrX 45967197 45967240 -116632690 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 229 326 23 12 chrX 45967426 45967512 -116632418 - MIR SINE MIR -4 258 172 324 322 60 38 chrX 45967770 45967953 -116631977 + MIR SINE MIR 25 211 -51 315 71 0 0 chrX 45967980 45968022 -116631908 + (TA)n Simple_repeat Simple_repeat 1 42 0 362 308 137 24 chrX 45968151 45968362 -116631568 + L1M4 LINE L1 14 248 -6294 567 193 86 0 chrX 45968520 45968660 -116631270 + L1 LINE L1 3568 3719 -2427 2723 133 5 0 chrX 45968661 45969081 -116630849 - MSTB1 LTR MaLR 0 432 11 2289 221 33 46 chrX 45969082 45969806 -116630124 + L1 LINE L1 3731 4445 -1701 2517 150 9 30 chrX 45969814 45970275 -116629655 + L1M1 LINE L1 22 472 -7093 1478 170 0 15 chrX 45970275 45970540 -116629390 + MLT1A1 LTR MaLR 105 365 0 2534 184 4 2 chrX 45970541 45971019 -116628911 + MLT1A1-int LTR MaLR 2 480 -1255 3611 217 62 72 chrX 45971028 45972167 -116627763 + MLT1A1-int LTR MaLR 609 1735 0 1565 177 116 3 chrX 45972167 45972495 -116627435 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 45972964 45972986 -116626944 + AT_rich Low_complexity Low_complexity 1 22 0 2015 243 31 9 chrX 45973764 45974430 -116625500 + L1M4 LINE L1 3481 4161 -1985 202 224 0 0 chrX 45974431 45974480 -116625450 + A-rich Low_complexity Low_complexity 1 49 0 288 167 0 0 chrX 45974543 45974597 -116625333 - L1PB4 LINE L1 -3 6153 6100 2483 132 41 19 chrX 45974598 45975015 -116624915 - MSTB LTR MaLR 0 426 1 2358 151 46 0 chrX 45975015 45975452 -116624478 - L1PB4 LINE L1 -104 6052 5596 9546 167 15 12 chrX 45975501 45977223 -116622707 - L1M1 LINE L1 -5837 1728 1 3355 242 52 7 chrX 45977210 45978078 -116621852 - L1M1 LINE L1 -6640 925 19 * 10597 157 29 6 chrX 45978120 45979932 -116619998 + ERVL LTR ERVL 717 2569 -3195 691 221 25 12 chrX 45979932 45980095 -116619835 + MLT2B3 LTR ERVL 390 554 0 429 172 11 11 chrX 45980100 45980193 -116619737 - L1M4 LINE L1 -1196 5761 5669 3475 254 63 23 chrX 45980197 45981907 -116618023 - L1M4c LINE L1 -2530 4427 2646 2391 88 7 0 chrX 45982233 45982529 -116617401 - AluSc SINE Alu -11 298 1 277 275 7 5 chrX 45982562 45982699 -116617231 - L1M4c LINE L1 -4539 2420 2293 1244 201 49 4 chrX 45982725 45982988 -116616942 - MLT1D LTR MaLR 0 505 231 372 133 17 0 chrX 45982991 45983051 -116616879 - MLT1D LTR MaLR -444 61 1 665 219 54 45 chrX 45983053 45983295 -116616635 - L1M4c LINE L1 -4681 2278 2035 589 158 73 12 chrX 45983297 45983461 -116616469 - L1M4c LINE L1 -5040 1815 1642 4897 71 18 10 chrX 45983471 45984143 -116615787 + L1PA13 LINE L1 5484 6160 -3 4459 136 42 39 chrX 45984383 45985230 -116614700 - MER4D LTR ERV1 -2 901 52 231 157 86 57 chrX 45985273 45985343 -116614587 - L1M4c LINE L1 -5129 1726 1655 2346 104 0 0 chrX 45985351 45985648 -116614282 + AluSx SINE Alu 1 297 -15 2996 181 52 11 chrX 45985652 45986264 -116613666 + LTR9B LTR ERV1 8 644 0 387 104 0 75 chrX 45986287 45986354 -116613576 + HUERS-P3 LTR ERV1 34 95 -7323 741 120 17 0 chrX 45986360 45986477 -116613453 + HUERS-P3 LTR ERV1 411 529 -6889 7821 153 16 17 chrX 45986481 45988700 -116611230 + HUERS-P3 LTR ERV1 764 3284 -5314 545 232 152 0 chrX 45988693 45988818 -116611112 + HUERS-P3 LTR ERV1 4539 4682 -4237 * 4184 121 30 8 chrX 45988819 45989481 -116610449 + HUERS-P3 LTR ERV1 4901 5577 -3342 * 4406 169 7 8 chrX 45989448 45990219 -116609711 + HUERS-P3 LTR ERV1 6143 6912 -2007 435 204 0 11 chrX 45990238 45990331 -116609599 + HUERS-P3 LTR ERV1 6854 6945 -473 748 165 16 36 chrX 45990334 45990528 -116609402 + HUERS-P3 LTR ERV1 2383 2572 -2443 1220 182 24 14 chrX 45990803 45991064 -116608866 + HUERS-P3 LTR ERV1 6828 8918 -1 3075 152 68 20 chrX 45991070 45991676 -116608254 + LTR9B LTR ERV1 10 644 0 1308 215 75 32 chrX 45991676 45991975 -116607955 - L1M4c LINE L1 -5194 1665 1340 5675 24 9 1 chrX 45991975 45992638 -116607292 + L1PA4 LINE L1 5483 6150 -5 1308 215 75 32 chrX 45992638 45992776 -116607154 - L1M4c LINE L1 -5519 1340 1209 410 244 136 66 chrX 45992995 45993157 -116606773 - L1M4c LINE L1 -5642 1217 1035 2304 168 54 2 chrX 45993157 45993562 -116606368 - MSTB LTR MaLR 0 426 1 410 244 136 66 chrX 45993562 45993612 -116606318 - L1M4c LINE L1 -5824 1035 990 565 241 6 31 chrX 45993768 45993930 -116606000 + MER67C LTR ERV1 1 158 -552 1289 172 151 32 chrX 45993938 45994375 -116605555 + LTR54B LTR ERV1 8 496 -2 * 2741 152 60 11 chrX 45994375 45994898 -116605032 + MER67C LTR ERV1 162 710 0 599 239 148 6 chrX 45995081 45995259 -116604671 - L1M4c LINE L1 -6646 213 11 291 169 17 0 chrX 45995264 45995323 -116604607 + L1MD3 LINE L1 7928 7987 -8 344 333 41 0 chrX 45995326 45995449 -116604481 - L2 LINE L2 -12 3260 3133 2328 48 0 0 chrX 45995829 45996098 -116603832 - AluSc SINE Alu -8 301 33 284 308 47 37 chrX 45996370 45996477 -116603453 - L2 LINE L2 -40 3232 3125 471 258 19 45 chrX 45996598 45996753 -116603177 - MIR SINE MIR -77 185 35 1819 160 7 3 chrX 45997259 45997547 -116602383 - AluJo SINE Alu -23 289 1 5283 36 3 0 chrX 45997554 45998138 -116601792 + L1PA5 LINE L1 5566 6151 -3 255 61 0 0 chrX 45998338 45998371 -116601559 + (TG)n Simple_repeat Simple_repeat 2 34 0 341 274 94 9 chrX 45998416 45998522 -116601408 + MIR SINE MIR 92 206 -56 295 333 106 16 chrX 45998739 45998862 -116601068 - L2 LINE L2 -40 3232 3099 217 316 0 0 chrX 45999352 45999409 -116600521 + MIR SINE MIR 48 104 -158 680 300 70 12 chrX 45999471 45999714 -116600216 + MIR SINE MIR 1 257 -5 546 371 51 30 chrX 46000477 46001103 -116598827 + L2 LINE L2 1253 1891 -1423 26 0 0 0 chrX 46001310 46001336 -116598594 + AT_rich Low_complexity Low_complexity 1 26 0 4293 193 23 16 chrX 46001336 46002232 -116597698 - L1MB8 LINE L1 -21 6968 6066 1520 204 90 6 chrX 46002238 46002749 -116597181 - L1MB8 LINE L1 -2922 4035 3424 2016 289 68 58 chrX 46002750 46003577 -116596353 - L1MB8 LINE L1 -5997 862 28 4130 140 22 2 chrX 46003582 46004181 -116595749 - LTR36 LTR ERV1 0 611 1 603 354 32 59 chrX 46004221 46004662 -116595268 - LTR36-int LTR ERV1 -73 7049 6621 368 177 32 0 chrX 46004681 46004753 -116595177 - MER49 LTR ERV1 -165 752 488 991 149 85 64 chrX 46004765 46005000 -116594930 - LTR36-int LTR ERV1 -178 6153 5914 10689 139 28 51 chrX 46005053 46008548 -116591382 - LTR36-int LTR ERV1 -529 5417 1634 478 129 35 65 chrX 46008537 46008692 -116591238 - LTR36-int LTR ERV1 -2530 4068 1731 * 6610 55 6 72 chrX 46008692 46009577 -116590353 + LTR12 LTR ERV1 1 826 0 22988 89 6 13 chrX 46009577 46012829 -116587101 + HERV9 LTR ERV1 40 714 0 2363 142 70 2 chrX 46012850 46013293 -116586637 - LTR36-int LTR ERV1 -6461 1659 1187 917 161 35 43 chrX 46013286 46013600 -116586330 - LTR36-int LTR ERV1 -476 1926 1076 * 521 250 8 31 chrX 46013681 46013809 -116586121 - LTR36-int LTR ERV1 -2738 1547 1423 653 290 29 25 chrX 46014123 46014368 -116585562 - LTR36-int LTR ERV1 -1422 364 119 4200 120 26 25 chrX 46014444 46015054 -116584876 - LTR36 LTR ERV1 0 611 1 413 342 44 0 chrX 46015095 46015323 -116584607 + L2 LINE L2 2146 2383 -931 538 100 0 0 chrX 46015327 46015397 -116584533 - LTR36 LTR ERV1 -103 508 439 239 236 18 45 chrX 46015417 46015527 -116584403 + L2 LINE L2 2401 2507 -807 1018 185 0 0 chrX 46015559 46015716 -116584214 - FRAM SINE Alu -20 156 1 303 312 43 0 chrX 46015719 46015812 -116584118 + L2 LINE L2 2533 2629 -685 485 356 31 62 chrX 46015965 46016353 -116583577 + L2 LINE L2 2856 3231 -41 504 216 43 36 chrX 46016644 46016783 -116583147 - L1MA9 LINE L1 -30 6282 6143 2318 56 38 0 chrX 46016786 46017074 -116582856 - AluY SINE Alu -12 299 1 322 296 43 9 chrX 46017118 46017233 -116582697 + MIR SINE MIR 45 163 -99 227 377 70 0 chrX 46018526 46018640 -116581290 - MER91A DNA MER1_type -74 122 1 304 226 73 79 chrX 46018763 46018872 -116581058 + L1ME4a LINE L1 5944 6053 -68 1560 109 50 0 chrX 46018872 46019110 -116580820 - L1MA3 LINE L1 0 6305 6056 304 226 73 79 chrX 46019110 46019177 -116580753 + L1ME4a LINE L1 6053 6119 -2 1110 174 40 25 chrX 46019517 46019792 -116580138 - L1MC5 LINE L1 -35 7926 7648 21 36 0 0 chrX 46020471 46020499 -116579431 + AT_rich Low_complexity Low_complexity 1 28 0 298 192 110 0 chrX 46020499 46020572 -116579358 - MER113 DNA MER1_type? -274 247 167 243 377 39 8 chrX 46020868 46020998 -116578932 - L2 LINE L2 0 3272 3139 193 300 83 0 chrX 46021640 46021700 -116578230 - L2 LINE L2 -220 3093 3029 1854 118 33 59 chrX 46021865 46022170 -116577760 - AluSx SINE Alu -15 297 1 564 138 53 0 chrX 46023617 46023711 -116576219 + L1PA13 LINE L1 6060 6158 -5 183 80 0 0 chrX 46025993 46026018 -116573912 + (CCG)n Simple_repeat Simple_repeat 1 25 0 215 91 91 0 chrX 46027096 46027140 -116572790 + T-rich Low_complexity Low_complexity 2 49 0 1373 7 0 0 chrX 46027155 46027300 -116572630 - L1PA3 LINE L1 -1 6154 6010 6497 19 0 0 chrX 46027300 46028288 -116571642 + L1PA3 LINE L1 4999 5986 -169 2389 78 3 0 chrX 46028948 46029255 -116570675 + AluSp SINE Alu 1 308 -5 243 287 23 47 chrX 46029316 46029445 -116570485 + L1M4 LINE L1 4038 4163 -1983 28 29 0 0 chrX 46029545 46029580 -116570350 + AT_rich Low_complexity Low_complexity 1 35 0 2595 149 73 0 chrX 46030136 46030533 -116569397 + MSTA LTR MaLR 1 426 -2 562 247 53 149 chrX 46030759 46031229 -116568701 + MLT1H LTR MaLR 118 542 -7 226 261 97 45 chrX 46031374 46031508 -116568422 - MIR SINE MIR -4 258 118 312 250 110 10 chrX 46032675 46032775 -116567155 + MIR SINE MIR 53 162 -100 749 257 57 79 chrX 46033605 46034207 -116565723 + L2 LINE L2 2737 3313 0 195 351 69 23 chrX 46034209 46034340 -116565590 + L2 LINE L2 3136 3272 0 180 358 49 0 chrX 46034459 46034540 -116565390 + L2 LINE L2 3155 3239 -33 346 311 60 27 chrX 46034764 46034947 -116564983 - MIR SINE MIR -28 234 46 476 256 66 29 chrX 46035984 46036196 -116563734 - MIR SINE MIR -32 230 12 2123 97 10 24 chrX 46036734 46037032 -116562898 + AluSq SINE Alu 1 294 -19 260 213 0 0 chrX 46037698 46037759 -116562171 - MER4-int LTR ERV1 -5423 1175 1115 836 180 53 0 chrX 46038292 46038442 -116561488 - MLT1E1 LTR MaLR 0 654 497 472 161 11 0 chrX 46038444 46038531 -116561399 - MLT2B2 LTR ERVL -427 88 1 507 277 98 36 chrX 46038776 46039000 -116560930 - MIR SINE MIR -10 252 15 693 269 32 50 chrX 46039220 46039502 -116560428 + L2 LINE L2 1628 1904 -1410 6706 56 5 1 chrX 46039503 46040344 -116559586 + L1P LINE L1 1938 2781 -3365 2165 296 108 24 chrX 46040347 46040419 -116559511 + L2 LINE L2 1909 1974 -1339 2335 101 0 0 chrX 46040419 46040716 -116559214 + AluSq SINE Alu 1 297 -16 2165 296 108 24 chrX 46040716 46041728 -116558202 + L2 LINE L2 1974 3067 -246 198 128 0 0 chrX 46041747 46041786 -116558144 + (T)n Simple_repeat Simple_repeat 1 39 0 30094 43 14 1 chrX 46041809 46047837 -116552093 - L1PA3 LINE L1 0 6155 1 434 322 10 34 chrX 46047856 46048064 -116551866 + L2 LINE L2 3097 3299 -14 429 54 0 0 chrX 46048498 46048554 -116551376 + (TG)n Simple_repeat Simple_repeat 1 56 0 338 318 23 69 chrX 46048968 46049141 -116550789 - L1ME3A LINE L1 -37 6133 5969 221 383 42 8 chrX 46049369 46049489 -116550441 - L2 LINE L2 -11 3261 3138 268 306 45 27 chrX 46049576 46049687 -116550243 + MIR SINE MIR 67 179 -83 314 365 46 30 chrX 46050104 46050301 -116549629 - MIR SINE MIR 0 262 63 1959 200 30 116 chrX 46050357 46051227 -116548703 - L1MC4 LINE L1 -1 8041 7247 2817 163 39 19 chrX 46051323 46051771 -116548159 - L1MA8 LINE L1 -3 6288 5824 1676 205 3 0 chrX 46051771 46052068 -116547862 - AluJb SINE Alu -12 300 3 2817 163 39 19 chrX 46052068 46052207 -116547723 - L1MA8 LINE L1 -467 5824 5689 236 143 0 20 chrX 46052216 46052265 -116547665 - L1MC4 LINE L1 -896 7146 7099 1869 176 35 29 chrX 46052267 46052818 -116547112 - MLT2A2 LTR ERVL 0 554 1 1052 232 29 3 chrX 46052840 46053146 -116546784 - L1MC4 LINE L1 -955 7087 6774 209 287 35 92 chrX 46053159 46053287 -116546643 + MIR SINE MIR 67 184 -78 2282 102 3 9 chrX 46053287 46053602 -116546328 + AluSq SINE Alu 1 313 0 209 287 35 92 chrX 46053602 46053647 -116546283 + MIR SINE MIR 184 230 -32 256 191 43 64 chrX 46053666 46053760 -116546170 + L1MC4 LINE L1 6984 7075 -967 435 271 123 0 chrX 46054088 46054210 -116545720 + L2 LINE L2 3136 3272 0 241 254 0 0 chrX 46054253 46054308 -116545622 - MIR SINE MIR -73 135 81 2249 102 0 13 chrX 46054308 46054612 -116545318 - AluSq SINE Alu -13 300 1 412 290 61 8 chrX 46054819 46054950 -116544980 - L2 LINE L2 -4 3309 3172 210 279 2 0 chrX 46055169 46055226 -116544704 + MIR SINE MIR 97 155 -53 196 312 91 0 chrX 46055307 46055384 -116544546 - MIR SINE MIR 0 262 179 37 93 0 0 chrX 46055605 46055712 -116544218 + AT_rich Low_complexity Low_complexity 1 107 0 1387 154 4 0 chrX 46055783 46056030 -116543900 - L1MA6 LINE L1 0 6300 6053 5079 230 26 12 chrX 46056032 46057552 -116542378 + L1 LINE L1 2581 4122 -2024 356 219 16 0 chrX 46057552 46057616 -116542314 + MER2 DNA MER2_type 1 65 -280 759 273 12 31 chrX 46057771 46058015 -116541915 - L1MEc LINE L1 -3712 2454 2226 2264 119 0 0 chrX 46058015 46058309 -116541621 - AluSx SINE Alu -18 294 1 759 273 12 31 chrX 46058309 46058419 -116541511 - L1MEc LINE L1 -3940 2226 2115 874 153 0 8 chrX 46058430 46058561 -116541369 - AluSq/x SINE Alu -182 130 1 337 274 21 120 chrX 46058802 46059011 -116540919 - MIR SINE MIR -70 192 6 211 229 13 47 chrX 46059100 46059199 -116540731 + L2 LINE L2 2896 2992 -321 2642 121 0 0 chrX 46059857 46060221 -116539709 - THE1B LTR MaLR 0 364 1 233 298 0 0 chrX 46060269 46060326 -116539604 + L2 LINE L2 3257 3313 0 218 378 5 41 chrX 46060369 46060565 -116539365 + L2 LINE L2 1227 1415 -1899 3310 222 64 28 chrX 46060751 46061244 -116538686 - L1ME1 LINE L1 -5 6972 6498 2501 142 42 31 chrX 46061244 46061696 -116538234 - MSTB2 LTR MaLR 0 457 1 3310 222 64 28 chrX 46061696 46062884 -116537046 - L1ME1 LINE L1 -479 6498 5227 2039 141 131 13 chrX 46062884 46063267 -116536663 + MSTA LTR MaLR 1 428 0 3310 222 64 28 chrX 46063267 46063621 -116536309 - L1ME1 LINE L1 -1750 5227 4887 252 0 0 0 chrX 46063624 46063652 -116536278 + (TG)n Simple_repeat Simple_repeat 2 29 0 643 148 31 10 chrX 46063663 46063859 -116536071 + CT-rich Low_complexity Low_complexity 1 200 0 1407 166 102 4 chrX 46063859 46064124 -116535806 - AluJo SINE Alu -13 299 9 572 261 22 14 chrX 46064132 46064354 -116535576 - L1ME1 LINE L1 -2094 4863 4640 807 168 0 29 chrX 46064355 46064492 -116535438 + FLAM_C SINE Alu 1 133 -10 548 262 112 0 chrX 46064550 46064764 -116535166 - L1ME1 LINE L1 -5291 1568 1331 185 62 0 31 chrX 46064805 46064837 -116535093 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 41012 47 6 0 chrX 46064837 46070930 -116529000 - L1PA4 LINE L1 -24 6131 1 320 301 23 102 chrX 46071045 46071261 -116528669 - L1ME1 LINE L1 -5622 1233 1035 335 335 78 23 chrX 46071597 46071815 -116528115 - L1ME1 LINE L1 -6617 242 13 1146 261 88 16 chrX 46071885 46072260 -116527670 - MLT1H LTR MaLR -2 547 146 957 192 80 7 chrX 46072270 46072616 -116527314 - MER61C LTR ERV1 -30 404 1 15772 103 4 4 chrX 46072616 46075203 -116524727 - MER61C-int LTR ERV1 0 5217 2554 2077 143 0 0 chrX 46075204 46075491 -116524439 + AluSx SINE Alu 1 287 -25 2337 211 37 0 chrX 46076005 46076493 -116523437 + LTR53 LTR ERVL 1 506 -13 429 331 19 31 chrX 46076518 46076678 -116523252 - MIR SINE MIR -90 172 15 2168 109 7 0 chrX 46076765 46077050 -116522880 - AluSx SINE Alu -25 287 1 1968 86 0 0 chrX 46077073 46077316 -116522614 - AluSq SINE Alu -15 298 56 23816 123 9 8 chrX 46077317 46082121 -116517809 + L1PA8A LINE L1 1319 6119 -12 21 57 0 0 chrX 46082121 46082156 -116517774 + AT_rich Low_complexity Low_complexity 1 35 0 695 209 85 25 chrX 46082492 46082659 -116517271 - L1M4 LINE L1 -2780 3366 3174 845 181 81 0 chrX 46082659 46082819 -116517111 + FAM SINE Alu 1 173 -2 695 209 85 25 chrX 46082819 46082934 -116516996 - L1M4 LINE L1 -2972 3174 3067 * 6107 234 49 15 chrX 46082913 46085540 -116514390 - L1MB8 LINE L1 0 6178 3445 2277 111 7 0 chrX 46085540 46085847 -116514083 - AluSg SINE Alu -1 309 1 6107 234 49 15 chrX 46085847 46085972 -116513958 - L1MB8 LINE L1 -2733 3445 3326 1301 52 0 13 chrX 46086072 46086227 -116513703 - AluY SINE Alu -158 153 1 495 302 11 11 chrX 46086227 46086505 -116513425 - L1MB8 LINE L1 -2906 3240 2963 1074 190 60 87 chrX 46086510 46086647 -116513283 - L1MD2 LINE L1 -103 6650 6511 1969 90 45 64 chrX 46086647 46086958 -116512972 - AluSx SINE Alu -7 305 1 1074 190 60 87 chrX 46086958 46087189 -116512741 - L1MD2 LINE L1 -242 6511 6292 7486 47 2 0 chrX 46087189 46088889 -116511041 - L1PA5 LINE L1 -5 6149 4447 5824 233 38 17 chrX 46088899 46091185 -116508745 + L1MC/D LINE L1 3401 5736 -608 1518 138 20 0 chrX 46091190 46091443 -116508487 - MSTC LTR MaLR 0 428 171 10013 40 0 1 chrX 46091443 46092751 -116507179 - L1P LINE L1 -2220 3926 2620 1061 238 97 6 chrX 46092749 46093259 -116506671 - L1MD2 LINE L1 -449 6304 5613 * 945 258 113 34 chrX 46093269 46094144 -116505786 - L1MD2 LINE L1 -3748 2793 1860 5768 103 13 32 chrX 46094165 46095343 -116504587 - L1PA10 LINE L1 0 6168 5011 2411 70 0 23 chrX 46295518 46295818 -116304112 - AluSg1 SINE Alu -16 293 1 2230 115 3 0 chrX 46295853 46296148 -116303782 - AluSq SINE Alu -17 296 1 1662 203 7 0 chrX 46296451 46296742 -116303188 - AluJo SINE Alu -15 297 5 1416 183 133 0 chrX 46296748 46297011 -116302919 - AluJb SINE Alu -14 298 1 974 138 0 88 chrX 46297057 46297238 -116302692 - FRAM SINE Alu -19 157 1 524 209 37 96 chrX 46297254 46297441 -116302489 - L2 LINE L2 -35 3278 3103 527 256 106 6 chrX 46297559 46297719 -116302211 - MIR SINE MIR -76 186 11 338 264 120 16 chrX 46297727 46297852 -116302078 - MIR SINE MIR -77 185 48 416 333 58 10 chrX 46298007 46298250 -116301680 - MER115 DNA AcHobo -317 376 87 298 263 90 21 chrX 46298572 46298823 -116301107 - L1ME4a LINE L1 -22 6099 5795 547 266 44 92 chrX 46299044 46299360 -116300570 - L2 LINE L2 0 3272 2972 245 349 47 0 chrX 46299360 46299466 -116300464 + HAL1 LINE L1 3 113 -2394 3750 254 62 78 chrX 46299481 46299606 -116300324 + HAL1 LINE L1 239 365 -2142 1546 174 60 25 chrX 46299606 46299723 -116300207 + AluJo SINE Alu 3 114 -198 216 0 0 0 chrX 46299723 46299747 -116300183 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1546 174 60 25 chrX 46299747 46299910 -116300020 + AluJo SINE Alu 114 293 -19 3750 254 62 78 chrX 46299910 46300456 -116299474 + HAL1 LINE L1 365 918 -1589 872 142 0 8 chrX 46300456 46300590 -116299340 + FLAM_C SINE Alu 1 133 0 3750 254 62 78 chrX 46300590 46301520 -116298410 + HAL1 LINE L1 918 1862 -645 2328 107 0 0 chrX 46301520 46301820 -116298110 - AluSx SINE Alu -12 300 1 3750 254 62 78 chrX 46301820 46302041 -116297889 + HAL1 LINE L1 1862 2032 -475 2066 145 17 0 chrX 46302041 46302331 -116297599 + AluJb SINE Alu 1 295 -17 3750 254 62 78 chrX 46302331 46302448 -116297482 + HAL1 LINE L1 2032 2149 -358 1439 155 0 5 chrX 46302449 46302662 -116297268 + AluSg/x SINE Alu 82 293 -17 227 193 0 35 chrX 46302673 46302730 -116297200 + HAL1 LINE L1 2154 2208 -299 2276 117 0 3 chrX 46302806 46303106 -116296824 + AluSx SINE Alu 1 299 -13 2468 71 7 0 chrX 46303333 46303628 -116296302 + AluSx SINE Alu 1 297 -15 2622 68 0 0 chrX 46304033 46304343 -116295587 - AluY SINE Alu -1 310 1 2257 106 0 0 chrX 46304543 46304865 -116295065 + AluSx SINE Alu 1 322 0 421 324 45 11 chrX 46305005 46305181 -116294749 - MIR3 SINE MIR -7 201 20 518 263 190 5 chrX 46305634 46305839 -116294091 + MIR SINE MIR 1 243 -19 200 167 95 0 chrX 46305806 46305848 -116294082 + L2 LINE L2 3215 3260 -12 * 264 306 93 72 chrX 46306267 46306460 -116293470 - MIR SINE MIR -7 255 59 183 239 0 0 chrX 46306847 46306893 -116293037 + (CA)n Simple_repeat Simple_repeat 2 47 0 262 306 14 0 chrX 46307105 46307177 -116292753 + MIR3 SINE MIR 108 180 -28 454 227 66 58 chrX 46307224 46307410 -116292520 - MIR3 SINE MIR -62 146 3 577 244 14 34 chrX 46307416 46307625 -116292305 + L2 LINE L2 2772 2976 -338 261 0 0 0 chrX 46308302 46308331 -116291599 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 431 330 76 16 chrX 46308650 46308835 -116291095 - MER91A DNA MER1_type 0 196 1 376 231 5 156 chrX 46309395 46309581 -116290349 - MIR SINE MIR -71 191 34 340 301 64 6 chrX 46309661 46309817 -116290113 - MIR SINE MIR -2 260 96 237 213 49 16 chrX 46310420 46310481 -116289449 + MIR SINE MIR 78 140 -68 224 238 32 32 chrX 46310784 46310847 -116289083 - MIR SINE MIR -81 127 65 352 298 30 15 chrX 46310847 46310978 -116288952 + MIR SINE MIR 70 202 -60 209 282 71 12 chrX 46311366 46311451 -116288479 + MIR3 SINE MIR 109 198 -10 2480 81 0 3 chrX 46312696 46313006 -116286924 - AluSc SINE Alu 0 309 1 324 345 115 7 chrX 46314097 46314236 -116285694 - MIR SINE MIR -21 241 88 679 297 75 43 chrX 46314257 46314631 -116285299 - L2 LINE L2 0 3272 2887 367 318 63 55 chrX 46314898 46315153 -116284777 - L2 LINE L2 -31 3241 2985 371 284 125 0 chrX 46315588 46315764 -116284166 + L2 LINE L2 2779 2976 -338 468 211 26 18 chrX 46315813 46315927 -116284003 + L2 LINE L2 3180 3294 -19 300 308 168 7 chrX 46316216 46316359 -116283571 - MIR SINE MIR -77 185 20 189 162 0 0 chrX 46316366 46316403 -116283527 - MIR SINE MIR -91 117 81 2010 127 3 59 chrX 46316429 46316751 -116283179 - AluSx SINE Alu -8 304 1 330 276 124 0 chrX 46317300 46317405 -116282525 + MIR SINE MIR 29 146 -62 254 352 97 45 chrX 46317691 46317867 -116282063 + MIR SINE MIR 1 185 -77 298 217 17 0 chrX 46319200 46319320 -116280610 + CT-rich Low_complexity Low_complexity 2 123 0 622 233 3 13 chrX 46319693 46320004 -116279926 + CT-rich Low_complexity Low_complexity 1 308 0 274 276 41 10 chrX 46320347 46320445 -116279485 - L2 LINE L2 -231 3041 2941 2409 85 0 16 chrX 46320464 46320770 -116279160 - AluSg SINE Alu -9 301 1 1609 304 82 61 chrX 46320889 46321356 -116278574 + L1MC4a LINE L1 2877 3333 -2788 2704 58 0 0 chrX 46321356 46321667 -116278263 + AluY SINE Alu 1 311 0 1609 304 82 61 chrX 46321667 46321695 -116278235 + L1MC4a LINE L1 3333 3359 -2762 2412 100 0 0 chrX 46321695 46321995 -116277935 + AluSx SINE Alu 1 300 -12 1609 304 82 61 chrX 46321995 46322147 -116277783 + L1MC4a LINE L1 3359 3506 -2615 2301 82 0 30 chrX 46322147 46322452 -116277478 + AluSg SINE Alu 1 296 -14 1609 304 82 61 chrX 46322452 46322890 -116277040 + L1MC4a LINE L1 3506 3934 -2187 233 132 0 0 chrX 46322890 46322928 -116277002 + MLT1F1 LTR MaLR 526 563 -4 1609 304 82 61 chrX 46322928 46323665 -116276265 + L1MC4a LINE L1 3934 4655 -1466 1969 62 138 33 chrX 46323665 46323940 -116275990 + AluY SINE Alu 1 304 -7 1609 304 82 61 chrX 46323940 46324202 -116275728 + L1MC4a LINE L1 4655 4910 -1211 1688 125 46 59 chrX 46324202 46324505 -116275425 + AluSx SINE Alu 1 299 -13 1609 304 82 61 chrX 46324505 46324905 -116275025 + L1MC4a LINE L1 4910 5461 -660 2703 58 0 0 chrX 46324905 46325216 -116274714 + AluY SINE Alu 1 311 0 1609 304 82 61 chrX 46325216 46325378 -116274552 + L1MC4a LINE L1 5461 5618 -503 889 276 75 6 chrX 46325686 46326005 -116273925 + L1MC4a LINE L1 5600 5940 -1868 457 304 76 61 chrX 46326190 46326453 -116273477 - L2 LINE L2 -2 3270 3004 653 242 71 0 chrX 46326547 46326729 -116273201 + MIR SINE MIR 34 228 -34 180 283 0 0 chrX 46326721 46326767 -116273163 + L2 LINE L2 3153 3198 -74 * 593 299 19 24 chrX 46327118 46327329 -116272601 + MIR SINE MIR 53 262 0 340 337 89 20 chrX 46327388 46327634 -116272296 - L2 LINE L2 -90 3182 2920 183 42 0 0 chrX 46328598 46328622 -116271308 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1552 223 109 13 chrX 46328911 46329359 -116270571 - L2 LINE L2 0 3313 2823 1110 314 157 19 chrX 46329372 46330262 -116269668 - L2 LINE L2 -770 2544 1532 270 348 10 60 chrX 46330438 46330639 -116269291 - L2 LINE L2 -225 3047 2857 606 308 58 14 chrX 46330676 46330884 -116269046 - MIR SINE MIR -26 236 20 205 301 97 21 chrX 46331138 46331231 -116268699 - MIR SINE MIR -71 191 92 240 210 0 32 chrX 46331366 46331428 -116268502 + CT-rich Low_complexity Low_complexity 3 62 0 505 268 112 27 chrX 46331755 46331979 -116267951 - MIR SINE MIR 0 262 20 646 230 126 29 chrX 46332118 46332292 -116267638 + MIR SINE MIR 29 219 -43 234 156 0 0 chrX 46332601 46332646 -116267284 + GA-rich Low_complexity Low_complexity 1 45 0 367 248 119 18 chrX 46333523 46333632 -116266298 + MIR3 SINE MIR 87 206 -2 435 302 54 7 chrX 46334075 46334224 -116265706 + MIR SINE MIR 31 186 -76 232 295 16 23 chrX 46334396 46334525 -116265405 + (CTCA)n Simple_repeat Simple_repeat 1 128 0 856 161 0 0 chrX 46334600 46334724 -116265206 + FLAM_C SINE Alu 1 124 -19 210 326 31 23 chrX 46334932 46335061 -116264869 - L2 LINE L2 -218 3054 2925 272 296 35 35 chrX 46336271 46336386 -116263544 + MIR3 SINE MIR 82 196 -12 189 247 65 13 chrX 46336389 46336466 -116263464 - L3b LINE CR1 -158 1425 1345 461 272 8 8 chrX 46336619 46336744 -116263186 + MIR SINE MIR 12 136 -126 195 229 57 43 chrX 46336843 46336913 -116263017 - MIR3 SINE MIR -133 75 5 495 280 132 5 chrX 46337598 46337787 -116262143 + MIR SINE MIR 50 262 0 285 186 0 0 chrX 46337978 46338048 -116261882 + (TG)n Simple_repeat Simple_repeat 2 71 0 306 50 0 0 chrX 46338133 46338173 -116261757 + (TG)n Simple_repeat Simple_repeat 1 40 0 360 266 77 7 chrX 46338248 46338391 -116261539 - MIR SINE MIR -89 173 21 620 214 48 14 chrX 46338771 46338916 -116261014 + MIR SINE MIR 47 196 -66 1120 226 91 69 chrX 46339164 46339782 -116260148 + L2 LINE L2 2692 3309 -4 2256 123 3 0 chrX 46339838 46340146 -116259784 - AluJb SINE Alu -2 310 2 1882 154 7 7 chrX 46340151 46340443 -116259487 - AluSx SINE Alu -20 292 1 2359 95 10 0 chrX 46340453 46340757 -116259173 - AluSx SINE Alu -5 307 1 189 0 0 0 chrX 46340771 46340792 -116259138 + (TGG)n Simple_repeat Simple_repeat 1 21 0 243 0 0 0 chrX 46340794 46340821 -116259109 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1917 115 41 0 chrX 46340823 46341093 -116258837 - AluSx SINE Alu -31 281 1 186 244 0 0 chrX 46341241 46341286 -116258644 - L2 LINE L2 -20 3293 3249 1059 244 8 4 chrX 46341684 46341942 -116257988 + MIR SINE MIR 3 261 -1 186 304 223 18 chrX 46344053 46344165 -116255765 - L2 LINE L2 -4 3268 3134 235 232 0 21 chrX 46344342 46344437 -116255493 + CT-rich Low_complexity Low_complexity 2 94 0 2267 110 3 3 chrX 46345317 46345617 -116254313 - AluSx SINE Alu -12 300 1 339 211 294 0 chrX 46345764 46345873 -116254057 - MIR SINE MIR -5 257 117 186 399 11 16 chrX 46346002 46346185 -116253745 - L2 LINE L2 -172 3100 2919 406 296 78 48 chrX 46346243 46346449 -116253481 + MIR SINE MIR 45 256 -6 248 250 0 17 chrX 46346643 46346703 -116253227 - L2 LINE L2 -1 3312 3254 1252 174 77 84 chrX 46346826 46347137 -116252793 - MLT1F LTR MaLR 0 542 234 46 62 0 0 chrX 46347224 46347305 -116252625 + AT_rich Low_complexity Low_complexity 1 81 0 2194 121 7 0 chrX 46347305 46347602 -116252328 + AluSx SINE Alu 1 299 -13 2184 115 3 0 chrX 46347602 46347888 -116252042 - AluJo SINE Alu -25 287 1 699 222 52 7 chrX 46347894 46348047 -116251883 - MLT1F LTR MaLR -382 160 1 312 324 20 0 chrX 46348382 46348484 -116251446 + CT-rich Low_complexity Low_complexity 4 107 0 209 93 19 74 chrX 46349033 46349087 -116250843 + (CCCCAG)n Simple_repeat Simple_repeat 2 52 0 236 291 87 55 chrX 46349544 46349671 -116250259 + MIR3 SINE MIR 5 135 -73 263 300 42 50 chrX 46349699 46349819 -116250111 + MIR SINE MIR 17 135 -73 445 323 31 0 chrX 46350068 46350198 -116249732 - MIR SINE MIR -73 189 56 199 310 0 28 chrX 46350356 46350427 -116249503 + L3 LINE CR1 1505 1573 -4 330 239 0 0 chrX 46350589 46350660 -116249270 + MIR3 SINE MIR 93 163 -45 235 250 9 112 chrX 46351114 46351230 -116248700 + MIR3 SINE MIR 65 168 -40 408 287 73 15 chrX 46351624 46351760 -116248170 + MIR SINE MIR 107 250 -12 1017 227 11 37 chrX 46351774 46352043 -116247887 - MIR SINE MIR 0 262 1 207 170 0 43 chrX 46352048 46352095 -116247835 + MIR SINE MIR 31 75 -187 645 301 21 5 chrX 46352160 46352346 -116247584 + MIR SINE MIR 31 219 -43 323 284 53 11 chrX 46352881 46352976 -116246954 - L2 LINE L2 -22 3291 3193 195 69 0 0 chrX 46352977 46353006 -116246924 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 341 320 56 74 chrX 46353139 46353476 -116246454 - L2 LINE L2 -23 3249 2919 2297 123 3 0 chrX 46353504 46353813 -116246117 + AluSx SINE Alu 1 310 -2 2093 120 43 0 chrX 46354208 46354507 -116245423 - AluJo SINE Alu 0 312 1 279 54 0 0 chrX 46354692 46354729 -116245201 + (TG)n Simple_repeat Simple_repeat 2 38 0 819 249 193 67 chrX 46354767 46355122 -116244808 - L1ME4a LINE L1 -14 6107 5798 2005 133 0 4 chrX 46355122 46355400 -116244530 - AluJb SINE Alu -12 300 24 819 249 193 67 chrX 46355400 46355420 -116244510 - L1ME4a LINE L1 -323 5798 5782 2249 101 10 10 chrX 46355420 46355728 -116244202 - AluSc SINE Alu -1 308 1 819 249 193 67 chrX 46355728 46355961 -116243969 - L1ME4a LINE L1 -339 5782 5421 291 256 165 41 chrX 46356344 46356539 -116243391 + MIR SINE MIR 34 254 -8 2298 110 0 10 chrX 46356628 46356937 -116242993 + AluSx SINE Alu 1 306 -6 394 277 59 121 chrX 46356940 46357205 -116242725 - L2 LINE L2 -5 3267 3026 2551 84 0 0 chrX 46357205 46357514 -116242416 - AluSx SINE Alu -3 309 1 394 277 59 121 chrX 46357514 46357587 -116242343 - L2 LINE L2 -246 3026 2950 2057 137 6 13 chrX 46358258 46358572 -116241358 + AluJb SINE Alu 1 312 0 2431 83 3 3 chrX 46358590 46358891 -116241039 + AluSx SINE Alu 1 301 -11 447 315 116 17 chrX 46359013 46359245 -116240685 - L3 LINE CR1 -111 1466 1212 1066 146 101 0 chrX 46359247 46359446 -116240484 - MER20 DNA MER1_type 0 219 1 377 219 73 0 chrX 46359470 46359552 -116240378 + MIR SINE MIR 109 196 -66 355 276 61 0 chrX 46359626 46359724 -116240206 - L2 LINE L2 -22 3250 3147 2045 141 13 0 chrX 46360988 46361292 -116238638 + AluJo SINE Alu 1 308 -4 445 183 287 18 chrX 46361592 46361756 -116238174 - L3 LINE CR1 -7 1570 1363 396 315 102 5 chrX 46361784 46361981 -116237949 + MIR SINE MIR 34 249 -13 237 150 0 0 chrX 46362141 46362181 -116237749 - L3 LINE CR1 -343 1234 1195 725 262 33 14 chrX 46362431 46362645 -116237285 + MIR SINE MIR 20 237 -25 301 190 33 16 chrX 46363584 46363705 -116236225 + CT-rich Low_complexity Low_complexity 2 124 0 283 230 40 87 chrX 46364150 46364276 -116235654 + MIR3 SINE MIR 64 183 -25 213 39 0 0 chrX 46364694 46364720 -116235210 + (CCA)n Simple_repeat Simple_repeat 1 26 0 337 246 8 45 chrX 46365218 46365352 -116234578 + C-rich Low_complexity Low_complexity 4 132 0 26 0 0 0 chrX 46366500 46366526 -116233404 + AT_rich Low_complexity Low_complexity 1 26 0 394 302 82 6 chrX 46366978 46367137 -116232793 + MIR SINE MIR 10 180 -82 245 264 191 18 chrX 46367419 46367529 -116232401 - MIR SINE MIR -60 148 20 380 285 184 0 chrX 46368021 46368179 -116231751 + MIR SINE MIR 52 238 -24 180 0 0 0 chrX 46368582 46368602 -116231328 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 815 98 0 33 chrX 46368957 46369079 -116230851 + AluSg/x SINE Alu 189 306 -3 981 207 30 5 chrX 46369122 46369325 -116230605 + MER3 DNA MER1_type 2 209 0 294 298 88 56 chrX 46369415 46369630 -116230300 - L2 LINE L2 -181 3091 2870 1423 165 97 36 chrX 46369777 46369955 -116229975 - L1MC4 LINE L1 -704 7338 7172 1929 147 27 3 chrX 46369955 46370247 -116229683 - AluJo SINE Alu -13 299 1 1423 165 97 36 chrX 46370247 46370538 -116229392 - L1MC4 LINE L1 -870 7172 6762 551 168 174 0 chrX 46370593 46370742 -116229188 - L1MC4 LINE L1 -871 7171 6997 320 257 109 10 chrX 46370775 46370876 -116229054 - L1MC4 LINE L1 -1346 6696 6586 206 342 35 9 chrX 46370878 46370992 -116228938 - L2 LINE L2 -685 2629 2513 657 156 55 16 chrX 46371363 46371491 -116228439 + MIR SINE MIR 37 169 -93 335 250 62 0 chrX 46371520 46371616 -116228314 - MIR SINE MIR -65 197 96 485 282 8 0 chrX 46371634 46371751 -116228179 + L2 LINE L2 3196 3313 0 237 304 0 0 chrX 46371851 46371907 -116228023 - MIR SINE MIR -137 71 16 201 171 0 24 chrX 46372031 46372072 -116227858 + (CCA)n Simple_repeat Simple_repeat 3 42 0 322 278 49 32 chrX 46372245 46372372 -116227558 + MIR SINE MIR 70 197 -28 185 286 48 89 chrX 46372562 46372730 -116227200 + MIR SINE MIR 99 259 -3 285 239 151 24 chrX 46372753 46372769 -116227161 - MIR SINE MIR 0 262 249 193 107 0 0 chrX 46372769 46372797 -116227133 - L2 LINE L2 -22 3250 3223 285 239 151 24 chrX 46372797 46372938 -116226992 - MIR SINE MIR -13 249 16 246 299 231 8 chrX 46373170 46373287 -116226643 - L2 LINE L2 -1 3271 3129 278 280 243 23 chrX 46375310 46375524 -116224406 + MIR SINE MIR 1 261 -1 467 316 50 1 chrX 46377506 46377673 -116222257 + MIR3 SINE MIR 4 180 -28 352 301 142 0 chrX 46378245 46378358 -116221572 - MIR SINE MIR -114 148 20 223 320 97 0 chrX 46378852 46378955 -116220975 + MIR SINE MIR 30 142 -66 610 167 0 0 chrX 46379665 46379761 -116220169 + FLAM_C SINE Alu 33 128 -15 221 376 21 0 chrX 46380495 46380588 -116219342 - MIR SINE MIR -78 130 36 288 233 165 19 chrX 46380614 46380717 -116219213 + MIR SINE MIR 103 220 -42 2033 142 14 0 chrX 46380797 46381092 -116218838 + AluJb SINE Alu 6 304 -8 180 0 0 0 chrX 46382829 46382849 -116217081 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 977 199 0 0 chrX 46382856 46383007 -116216923 - FAM SINE Alu -34 151 1 349 261 34 11 chrX 46383037 46383125 -116216805 - L2 LINE L2 -36 3236 3147 298 252 107 10 chrX 46383153 46383256 -116216674 - MIR SINE MIR -34 228 116 614 274 77 83 chrX 46384107 46384629 -116215301 + L2 LINE L2 2751 3271 -1 2230 111 0 10 chrX 46385408 46385706 -116214224 + AluJb SINE Alu 1 295 -17 335 240 127 27 chrX 46385715 46385865 -116214065 - L1ME4a LINE L1 -75 6046 5882 201 167 0 0 chrX 46386279 46386315 -116213615 + (CATA)n Simple_repeat Simple_repeat 4 39 0 2358 101 0 3 chrX 46386641 46386948 -116212982 - AluSx SINE Alu -6 306 1 2503 74 3 0 chrX 46387063 46387362 -116212568 + AluSg SINE Alu 1 300 -10 320 282 176 0 chrX 46388187 46388329 -116211601 + MIR SINE MIR 69 235 -27 309 260 83 0 chrX 46388347 46388443 -116211487 + MIR SINE MIR 99 202 -60 921 281 78 8 chrX 46389494 46389750 -116210180 - MLT1J LTR MaLR -237 274 1 25 0 0 0 chrX 46390254 46390279 -116209651 + AT_rich Low_complexity Low_complexity 1 25 0 2431 97 0 3 chrX 46390549 46390860 -116209070 + AluSx SINE Alu 1 310 -2 2459 75 3 7 chrX 46390861 46391166 -116208764 + AluSx SINE Alu 1 304 -8 367 346 58 0 chrX 46391188 46391292 -116208638 - L1MC4 LINE L1 -1330 6712 6603 2448 61 0 61 chrX 46391667 46391997 -116207933 - AluSx SINE Alu 0 312 3 1487 154 24 48 chrX 46392192 46392464 -116207466 + MER33 DNA MER1_type 1 278 -2307 2444 82 0 7 chrX 46392464 46392767 -116207163 - AluSq SINE Alu -6 307 7 2423 109 0 0 chrX 46392772 46393083 -116206847 - AluSx SINE Alu 0 312 2 1487 154 24 48 chrX 46393083 46393136 -116206794 + MER33 DNA MER1_type 282 324 0 1519 178 178 10 chrX 46393180 46393580 -116206350 - L1MB7 LINE L1 0 6184 5718 23 0 0 0 chrX 46393791 46393814 -116206116 + AT_rich Low_complexity Low_complexity 1 23 0 188 308 25 42 chrX 46394077 46394197 -116205733 - L2 LINE L2 -524 2790 2673 376 192 64 0 chrX 46394298 46394376 -116205554 + L1M4 LINE L1 4495 4577 -1569 255 307 79 18 chrX 46394405 46394519 -116205411 - L1MB7 LINE L1 -521 5600 5480 4136 227 176 58 chrX 46394533 46394870 -116205060 + HAL1 LINE L1 1 297 -2210 2359 62 0 0 chrX 46394870 46395161 -116204769 + AluY SINE Alu 1 291 -20 4136 227 176 58 chrX 46395161 46395628 -116204302 + HAL1 LINE L1 297 708 -1799 1799 110 88 0 chrX 46395628 46395900 -116204030 + AluSx SINE Alu 6 301 -11 4136 227 176 58 chrX 46395900 46396561 -116203369 + HAL1 LINE L1 708 1290 -1217 2309 32 42 3 chrX 46396561 46396845 -116203085 + AluY SINE Alu 2 296 -15 4136 227 176 58 chrX 46396845 46397211 -116202719 + HAL1 LINE L1 1290 2049 -458 345 247 163 24 chrX 46397217 46397383 -116202547 + HAL1 LINE L1 2318 2506 -1 261 302 162 22 chrX 46398256 46398435 -116201495 + MIR SINE MIR 59 262 0 287 291 110 16 chrX 46398474 46398601 -116201329 + MIR SINE MIR 70 208 -54 195 220 80 0 chrX 46399443 46399493 -116200437 + MIR SINE MIR 92 145 -63 655 274 38 28 chrX 46399535 46399747 -116200183 - MIR SINE MIR 0 262 49 264 330 113 9 chrX 46402322 46402437 -116197493 - MER5A DNA MER1_type -27 162 36 * 423 247 21 0 chrX 46402364 46402457 -116197473 + MER5B DNA MER1_type 80 174 -4 248 281 16 0 chrX 46407099 46407163 -116192767 + CT-rich Low_complexity Low_complexity 3 67 0 25 0 0 0 chrX 46407441 46407466 -116192464 + AT_rich Low_complexity Low_complexity 1 25 0 210 202 146 45 chrX 46407579 46407668 -116192262 + MIR3 SINE MIR 8 105 -103 181 221 74 147 chrX 46407775 46407819 -116192111 + L2 LINE L2 2659 2694 -620 432 141 0 0 chrX 46407819 46407890 -116192040 - L1MB7 LINE L1 -9 6175 6105 181 221 74 147 chrX 46407890 46407940 -116191990 + L2 LINE L2 2694 2746 -568 706 174 19 46 chrX 46408108 46408429 -116191501 - L1MB8 LINE L1 0 6178 5819 243 241 228 0 chrX 46409406 46409485 -116190445 + L2 LINE L2 2985 3081 -191 553 261 37 8 chrX 46410396 46410530 -116189400 - MERVL LTR ERVL -1454 4310 4173 2171 183 101 68 chrX 46410532 46410992 -116188938 - MLT1E LTR MaLR -2 591 107 2241 78 7 0 chrX 46410992 46411285 -116188645 + AluSp SINE Alu 2 296 -17 2171 183 101 68 chrX 46411285 46411387 -116188543 - MLT1E LTR MaLR -486 107 10 365 311 68 6 chrX 46411418 46411595 -116188335 - MLT1E-int LTR MaLR -24 1347 1160 2140 60 60 0 chrX 46411624 46411905 -116188025 + AluY SINE Alu 1 298 -13 850 133 30 0 chrX 46411908 46412043 -116187887 - FLAM_C SINE Alu -4 139 1 647 193 13 145 chrX 46412043 46412271 -116187659 - MLT1E-int LTR MaLR -200 1171 974 2343 249 96 14 chrX 46412424 46413156 -116186774 - MERVL LTR ERVL -1451 4313 3522 913 239 124 32 chrX 46413453 46413801 -116186129 - MERVL LTR ERVL -3345 2140 1761 1025 248 113 39 chrX 46414142 46414557 -116185373 - MLT1J1 LTR MaLR 0 446 1 318 360 17 24 chrX 46414558 46414855 -116185075 - MERVL LTR ERVL -4379 1385 1091 1334 188 4 4 chrX 46414856 46415122 -116184808 + L1M4 LINE L1 3659 3924 -2222 1805 156 0 20 chrX 46415124 46415426 -116184504 + AluJo SINE Alu 1 296 -16 3505 190 156 17 chrX 46415437 46415793 -116184137 + L1M4 LINE L1 4276 4581 -1565 2249 83 0 19 chrX 46415793 46416105 -116183825 + AluSg SINE Alu 1 306 -4 3505 190 156 17 chrX 46416105 46416199 -116183731 + L1M4 LINE L1 4581 4661 -1485 1617 139 0 93 chrX 46416199 46416523 -116183407 - AluJo SINE Alu -18 294 1 3505 190 156 17 chrX 46416523 46416999 -116182931 + L1M4 LINE L1 4661 5338 -808 1726 91 4 0 chrX 46416999 46417229 -116182701 + AluSx SINE Alu 1 231 -81 3505 190 156 17 chrX 46417229 46417242 -116182688 + L1M4 LINE L1 5338 5348 -798 2266 79 7 0 chrX 46417283 46417587 -116182343 + AluSp SINE Alu 1 306 -7 2351 53 0 0 chrX 46417588 46417872 -116182058 + AluY SINE Alu 11 294 -17 302 65 0 0 chrX 46417970 46418016 -116181914 - Alu SINE Alu 0 302 257 388 275 100 31 chrX 46418024 46418184 -116181746 - MERVL LTR ERVL -4742 1022 852 460 331 39 31 chrX 46418232 46418489 -116181441 - MERVL LTR ERVL -5061 703 445 27 0 0 0 chrX 46418521 46418548 -116181382 + AT_rich Low_complexity Low_complexity 1 27 0 1747 134 25 4 chrX 46418548 46418684 -116181246 + AluSx SINE Alu 1 133 -179 2104 38 8 8 chrX 46418684 46418946 -116180984 + AluY SINE Alu 47 308 -3 1747 134 25 4 chrX 46418946 46419085 -116180845 + AluSx SINE Alu 133 282 -30 6633 125 26 9 chrX 46419085 46420042 -116179888 - L1MC1 LINE L1 -21 6312 5327 657 204 15 8 chrX 46420042 46420174 -116179756 - FLAM_A SINE Alu 0 133 1 6633 125 26 9 chrX 46420174 46420324 -116179606 - L1MC1 LINE L1 -1006 5327 5181 539 125 0 0 chrX 46420324 46420404 -116179526 - AluSg/x SINE Alu -14 298 219 2125 112 3 0 chrX 46420415 46420711 -116179219 - AluSq SINE Alu -14 299 3 983 98 8 0 chrX 46420714 46420847 -116179083 - AluSq/x SINE Alu -176 136 3 1053 217 4 0 chrX 46420848 46421074 -116178856 - L1MC1 LINE L1 -958 5188 4962 1743 149 7 0 chrX 46421509 46421785 -116178145 + AluJb SINE Alu 1 278 -34 956 153 18 24 chrX 46422277 46422447 -116177483 - AluJo SINE Alu -23 289 121 568 114 0 88 chrX 46422448 46422562 -116177368 - MER50 LTR ERV1 -134 600 497 811 191 0 0 chrX 46422562 46422698 -116177232 - AluJo SINE Alu -175 137 2 556 230 51 22 chrX 46422790 46422968 -116176962 - L1ME3A LINE L1 -190 5963 5781 991 164 26 36 chrX 46422995 46423190 -116176740 + LOR1b LTR ERV1 79 271 -190 * 1536 136 122 18 chrX 46423176 46423462 -116176468 + LOR1a LTR ERV1 182 497 0 1210 255 88 84 chrX 46423462 46423597 -116176333 - L1ME3A LINE L1 -360 5785 5652 2323 90 0 0 chrX 46423597 46423897 -116176033 - AluSx SINE Alu -12 300 1 1210 255 88 84 chrX 46423897 46424172 -116175758 - L1ME3A LINE L1 -493 5652 5380 1527 143 37 50 chrX 46424172 46424472 -116175458 - AluJo SINE Alu -16 296 1 1210 255 88 84 chrX 46424472 46424781 -116175149 - L1ME3A LINE L1 -765 5380 5074 832 110 0 59 chrX 46424781 46424917 -116175013 + FLAM_C SINE Alu 1 128 -5 1210 255 88 84 chrX 46424917 46425190 -116174740 - L1ME3A LINE L1 -1071 5074 4804 2136 88 6 44 chrX 46425190 46425508 -116174422 - AluSx SINE Alu -6 306 1 1210 255 88 84 chrX 46425508 46425817 -116174113 - L1ME3A LINE L1 -1341 4804 4479 1752 145 11 0 chrX 46425821 46426097 -116173833 - AluJb SINE Alu -15 297 19 1408 165 0 0 chrX 46426106 46426330 -116173600 - AluJb SINE Alu -6 306 83 2123 110 0 0 chrX 46426330 46426622 -116173308 - AluSq SINE Alu -20 293 2 250 240 62 58 chrX 46426630 46426838 -116173092 - L1 LINE L1 -1653 4493 4285 313 222 51 45 chrX 46426922 46427098 -116172832 - L1ME3A LINE L1 -5022 1097 921 219 36 0 0 chrX 46427525 46427553 -116172377 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 2220 106 0 6 chrX 46427553 46427966 -116171964 - AluSx SINE Alu 0 411 1 2133 153 3 12 chrX 46429130 46429469 -116170461 + MLT1A1 LTR MaLR 12 347 -18 1141 218 58 19 chrX 46430123 46430384 -116169546 + L1MC4 LINE L1 7640 7910 -132 519 170 18 9 chrX 46430667 46430772 -116169158 + MLT2D LTR ERVL 1 109 -305 267 31 0 0 chrX 46430772 46430804 -116169126 + (CATA)n Simple_repeat Simple_repeat 4 35 0 828 139 21 14 chrX 46430813 46430957 -116168973 - AluJb SINE Alu -32 280 136 2122 108 16 3 chrX 46430958 46431263 -116168667 - AluSx SINE Alu -3 309 1 1323 80 62 0 chrX 46431263 46431439 -116168491 - LTR9B LTR ERV1 -457 187 1 16707 102 23 12 chrX 46431446 46434025 -116165905 - HUERS-P3b LTR ERV1 -13 7405 2124 6092 75 15 15 chrX 46434019 46434821 -116165109 - HUERS-P3b LTR ERV1 -3544 3874 3073 * 720 217 0 0 chrX 46434821 46434950 -116164980 + LTR8 LTR ERV1 1 129 -562 950 82 82 0 chrX 46434953 46435088 -116164842 - LTR9B LTR ERV1 -498 146 1 2304 147 25 54 chrX 46435843 46436284 -116163646 + LTR3 LTR ERVK 5 432 0 6572 113 33 5 chrX 46436285 46437250 -116162680 + HERVK3 LTR ERVK 41 1032 -6211 * 10537 119 17 8 chrX 46437248 46438808 -116161122 + HERVK3 LTR ERVK 1336 2910 -4333 8421 109 25 2 chrX 46438795 46440007 -116159923 + HERVK3 LTR ERVK 4119 5358 -1885 * 600 137 0 11 chrX 46440026 46440121 -116159809 + HERVK3 LTR ERVK 7150 7243 0 2203 147 28 63 chrX 46440125 46440554 -116159376 + LTR3 LTR ERVK 5 418 -14 2260 73 0 0 chrX 46440937 46441224 -116158706 - AluY SINE Alu -24 287 1 247 180 120 0 chrX 46441529 46441579 -116158351 - AluS SINE Alu -205 97 42 23817 144 42 16 chrX 46442882 46443456 -116156474 + ERVL-B1 LTR ERVL 1784 2342 -3422 2662 141 26 60 chrX 46443456 46443959 -116155971 + LTR19A LTR ERV1 1 486 0 23817 144 42 16 chrX 46443959 46444290 -116155640 + ERVL-B1 LTR ERVL 2342 2663 -3101 1958 173 0 10 chrX 46444290 46444603 -116155327 - AluJo SINE Alu 0 312 3 23817 144 42 16 chrX 46444603 46444825 -116155105 + ERVL-B1 LTR ERVL 2663 2878 -2886 2351 104 0 7 chrX 46444825 46445133 -116154797 - AluSx SINE Alu -6 306 1 716 200 0 15 chrX 46445137 46445267 -116154663 - FLAM_C SINE Alu -5 128 1 23817 144 42 16 chrX 46445267 46445352 -116154578 + ERVL-B1 LTR ERVL 2880 2961 -2803 2316 138 25 0 chrX 46445352 46445707 -116154223 + THE1B LTR MaLR 1 364 0 23817 144 42 16 chrX 46445707 46448359 -116151571 + ERVL-B1 LTR ERVL 2961 5757 -7 1604 215 85 57 chrX 46448359 46448865 -116151065 + MLT2B1 LTR ERVL 1 520 0 890 228 0 0 chrX 46448935 46449093 -116150837 - FAM SINE Alu -17 158 1 691 164 55 0 chrX 46449109 46449237 -116150693 + AluJo SINE Alu 2 136 -176 42 65 0 0 chrX 46449237 46449314 -116150616 + AT_rich Low_complexity Low_complexity 1 77 0 8418 31 5 0 chrX 46449416 46451177 -116148753 - L1PA4 LINE L1 -3 6152 4393 28231 50 11 0 chrX 46451189 46454647 -116145283 - L1PA4 LINE L1 -2649 3497 2 1882 121 0 0 chrX 46455004 46455252 -116144678 - AluSx SINE Alu -64 248 1 1841 156 7 0 chrX 46455260 46455542 -116144388 - AluSx SINE Alu -18 294 11 2370 94 0 0 chrX 46457052 46457349 -116142581 + AluSg SINE Alu 1 297 -13 198 270 0 0 chrX 46458021 46458095 -116141835 + GA-rich Low_complexity Low_complexity 1 74 0 2193 130 3 0 chrX 46458486 46458786 -116141144 - AluSq SINE Alu -12 301 1 21 57 0 0 chrX 46458836 46458871 -116141059 + AT_rich Low_complexity Low_complexity 1 35 0 646 287 61 65 chrX 46459014 46459144 -116140786 - L1ME LINE L1 -434 5730 5601 2203 117 0 13 chrX 46459144 46459451 -116140479 - AluSx SINE Alu -9 303 1 646 287 61 65 chrX 46459451 46459763 -116140167 - L1ME LINE L1 -563 5601 5290 181 79 0 53 chrX 46459784 46459822 -116140108 + (TCC)n Simple_repeat Simple_repeat 1 36 0 1535 195 13 33 chrX 46459822 46460129 -116139801 - AluJo SINE Alu -11 301 1 704 299 108 29 chrX 46460140 46460423 -116139507 - L1ME LINE L1 -856 5290 5031 2229 106 0 22 chrX 46460423 46460734 -116139196 - AluSx SINE Alu -8 304 1 704 299 108 29 chrX 46460734 46460939 -116138991 - L1ME LINE L1 -1115 5031 4763 1465 101 5 0 chrX 46460942 46461131 -116138799 - AluSp SINE Alu -12 301 112 1263 72 7 0 chrX 46461133 46461285 -116138645 - AluSp SINE Alu -160 153 1 252 230 43 32 chrX 46461293 46461311 -116138619 + L1M4 LINE L1 3099 3115 -3031 2118 102 48 0 chrX 46461311 46461605 -116138325 + AluSp SINE Alu 1 308 -5 252 230 43 32 chrX 46461605 46461773 -116138157 + L1M4 LINE L1 3115 3287 -2859 2343 71 3 17 chrX 46461880 46462174 -116137756 - AluSp SINE Alu -14 299 10 379 100 0 0 chrX 46462175 46462225 -116137705 - Alu SINE Alu -252 50 1 309 298 109 34 chrX 46462253 46462575 -116137355 + L1M4 LINE L1 3350 3695 -2451 1850 160 14 0 chrX 46462626 46462934 -116136996 + AluSq SINE Alu 1 312 0 342 0 0 0 chrX 46462934 46462972 -116136958 + (TA)n Simple_repeat Simple_repeat 2 39 0 1018 128 70 0 chrX 46462972 46463128 -116136802 + FRAM SINE Alu 1 167 -9 2123 103 3 3 chrX 46463128 46463441 -116136489 + AluSq SINE Alu 1 313 0 2378 98 0 0 chrX 46465289 46465586 -116134344 - AluSq SINE Alu -16 297 1 1887 171 10 0 chrX 46466281 46466579 -116133351 - AluJo SINE Alu -10 302 2 320 346 28 28 chrX 46467057 46467268 -116132662 - L1ME LINE L1 -632 5534 5324 3890 199 47 25 chrX 46467396 46468317 -116131613 - L1ME LINE L1 -1483 4663 3723 504 219 121 125 chrX 46468980 46469125 -116130805 - MIR SINE MIR 0 262 117 390 85 34 0 chrX 46469125 46469184 -116130746 - U7 snRNA snRNA -1 62 2 504 219 121 125 chrX 46469184 46469294 -116130636 - MIR SINE MIR -145 117 8 2052 134 0 0 chrX 46469499 46469816 -116130114 + AluSx SINE Alu 1 317 0 332 200 0 96 chrX 46469821 46469956 -116129974 + HAL1 LINE L1 945 1066 -1441 343 279 79 64 chrX 46469980 46470245 -116129685 + L1MDa LINE L1 1732 2000 -4540 2314 87 33 0 chrX 46470277 46470397 -116129533 + AluY SINE Alu 1 116 -195 297 0 0 0 chrX 46470397 46470430 -116129500 + (CA)n Simple_repeat Simple_repeat 2 34 0 2314 87 33 0 chrX 46470430 46470609 -116129321 + AluY SINE Alu 116 310 -1 282 285 44 24 chrX 46471058 46471202 -116128728 + L1M4 LINE L1 3699 3847 -2299 302 317 142 42 chrX 46471208 46471448 -116128482 + L2 LINE L2 3004 3267 -5 234 327 44 0 chrX 46471475 46471588 -116128342 + L3 LINE CR1 675 792 -785 1824 220 49 27 chrX 46472226 46472817 -116127113 - L2 LINE L2 0 3313 2709 700 207 20 25 chrX 46472828 46473026 -116126904 + HAL1 LINE L1 1980 2176 -331 3482 265 83 35 chrX 46473027 46473533 -116126397 + L1MEd LINE L1 832 1312 -4817 354 45 0 0 chrX 46473533 46473577 -116126353 + (CTA)n Simple_repeat Simple_repeat 3 46 0 3482 265 83 35 chrX 46473577 46475589 -116124341 + L1MEd LINE L1 1312 3500 -2629 1409 263 99 31 chrX 46476621 46477321 -116122609 + L1MEd LINE L1 3493 4239 -1890 3401 184 88 80 chrX 46477326 46478356 -116121574 + L1MC3 LINE L1 6747 7785 0 2338 93 0 7 chrX 46478365 46478675 -116121255 + AluSx SINE Alu 1 308 -4 1891 95 4 4 chrX 46478675 46478917 -116121013 + AluSx SINE Alu 32 273 -39 217 0 29 29 chrX 46478928 46478962 -116120968 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 870 261 123 74 chrX 46478984 46479330 -116120600 + L1MEd LINE L1 4280 4607 -1522 1836 155 7 3 chrX 46479330 46479614 -116120316 + AluJb SINE Alu 1 285 -27 870 261 123 74 chrX 46479614 46479647 -116120283 + L1MEd LINE L1 4607 4637 -1492 1686 170 11 7 chrX 46479647 46479952 -116119978 + AluJb SINE Alu 1 306 0 870 261 123 74 chrX 46479952 46480317 -116119613 + L1MEd LINE L1 4637 5063 -1066 1396 112 8 80 chrX 46480382 46480631 -116119299 + AluJb SINE Alu 82 312 0 1705 250 132 18 chrX 46480631 46480761 -116119169 + L1MEd LINE L1 5140 5254 -899 586 246 15 22 chrX 46480761 46480889 -116119041 + FLAM_A SINE Alu 1 128 0 1980 155 0 0 chrX 46480889 46481185 -116118745 - AluJb SINE Alu -14 298 3 1705 250 132 18 chrX 46481190 46481746 -116118184 + L1MEd LINE L1 5254 5745 -408 2414 74 7 16 chrX 46481746 46482055 -116117875 + AluSx SINE Alu 1 306 -6 189 0 0 0 chrX 46482055 46482076 -116117854 + (CA)n Simple_repeat Simple_repeat 2 22 0 1705 250 132 18 chrX 46482076 46482105 -116117825 + L1MEd LINE L1 5744 5920 -233 2260 113 10 0 chrX 46482365 46482666 -116117264 - AluSx SINE Alu -8 304 1 329 250 62 28 chrX 46482709 46482853 -116117077 - L2 LINE L2 -1488 1826 1678 467 267 52 30 chrX 46482858 46483103 -116116827 + L1M4b LINE L1 16 549 -6306 1065 273 32 43 chrX 46483135 46483480 -116116450 + L1M4b LINE L1 848 1188 -5667 267 208 47 47 chrX 46483557 46483663 -116116267 + L1M4b LINE L1 1193 1298 -5557 6449 179 235 20 chrX 46483712 46485319 -116114611 + L1M3e LINE L1 6 1958 -5072 754 127 0 8 chrX 46485320 46485438 -116114492 + FLAM_C SINE Alu 2 118 -25 2019 129 0 20 chrX 46485463 46485757 -116114173 + AluJb SINE Alu 3 290 -22 2382 85 0 31 chrX 46485785 46486102 -116113828 + AluSx SINE Alu 1 307 -5 414 132 33 22 chrX 46486113 46486204 -116113726 + L1M3e LINE L1 1954 2045 -4985 24792 29 3 1 chrX 46486304 46489644 -116110286 + L1P1 LINE L1 2459 5805 -350 3694 32 0 0 chrX 46489745 46490180 -116109750 - L1P1 LINE L1 -366 5789 5355 7867 20 0 2 chrX 46490180 46491463 -116108467 + L1PA4 LINE L1 4872 6152 -3 2636 98 5 3 chrX 46491463 46491849 -116108081 + L1MA2 LINE L1 5760 6146 -158 259 255 0 0 chrX 46692632 46692686 -115907244 - MIR SINE MIR -92 116 63 758 150 231 12 chrX 46693079 46693252 -115906678 - MER46A DNA MER2_type 0 236 26 584 126 23 23 chrX 46693694 46693809 -115906121 - AluJb SINE Alu 0 312 201 204 40 0 0 chrX 46696028 46696053 -115903877 + (A)n Simple_repeat Simple_repeat 1 25 0 630 189 63 119 chrX 46696073 46696375 -115903555 + L1ME2 LINE L1 5725 6009 -155 1806 147 33 0 chrX 46696424 46696739 -115903191 + AluSx SINE Alu 1 324 0 340 288 144 25 chrX 46697343 46697461 -115902469 - L2 LINE L2 -1 3271 3140 219 36 0 0 chrX 46697534 46697562 -115902368 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 2146 140 0 7 chrX 46698822 46699129 -115900801 + AluSq SINE Alu 1 305 -8 22 0 0 0 chrX 46699129 46699151 -115900779 + AT_rich Low_complexity Low_complexity 1 22 0 320 301 26 53 chrX 46699236 46699349 -115900581 - MIR3 SINE MIR -21 187 78 305 354 96 11 chrX 46699642 46699820 -115900110 - MIR SINE MIR -4 258 66 1805 122 0 0 chrX 46700119 46700365 -115899565 - AluSx SINE Alu -64 248 3 1212 159 142 4 chrX 46700809 46701042 -115898888 - AluJb SINE Alu -47 265 1 254 225 14 14 chrX 46702593 46702664 -115897266 - L1ME LINE L1 -299 5822 5752 252 241 98 45 chrX 46702726 46702838 -115897092 - L1ME LINE L1 -483 5638 5521 299 208 139 0 chrX 46703477 46703549 -115896381 - L2 LINE L2 -20 3252 3171 190 307 159 15 chrX 46703564 46703828 -115896102 + L2 LINE L2 1793 2094 -1220 186 263 0 35 chrX 46703843 46703900 -115896030 - L2 LINE L2 -588 2726 2672 15969 134 60 13 chrX 46704679 46707272 -115892658 - Tigger2 DNA MER2_type -3 2715 1 1159 148 124 5 chrX 46708506 46708716 -115891214 - MER46A DNA MER2_type -1 235 1 200 59 29 0 chrX 46709324 46709358 -115890572 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2390 62 3 0 chrX 46709361 46709649 -115890281 - AluY SINE Alu -22 289 1 1671 156 219 3 chrX 46710307 46710659 -115889271 - MSTA LTR MaLR 0 428 1 230 238 32 0 chrX 46711973 46712036 -115887894 - L1ME LINE L1 -516 5605 5541 345 291 63 16 chrX 46714607 46714734 -115885196 + L1ME LINE L1 5531 5663 -458 191 303 221 0 chrX 46715568 46715713 -115884217 + MIR3 SINE MIR 4 180 -28 1659 158 106 62 chrX 46716470 46716530 -115883400 - MSTD LTR MaLR 0 396 340 1886 147 0 27 chrX 46716530 46716829 -115883101 + AluJb SINE Alu 1 291 -21 1659 158 106 62 chrX 46716829 46717136 -115882794 - MSTD LTR MaLR -56 340 13 1151 108 179 5 chrX 46717524 46717719 -115882211 - MER30 DNA MER1_type 0 230 2 205 317 58 29 chrX 46717989 46718093 -115881837 + MIR3 SINE MIR 88 194 -14 252 86 0 0 chrX 46719179 46719214 -115880716 + (T)n Simple_repeat Simple_repeat 1 35 0 219 360 14 58 chrX 46719386 46719525 -115880405 - L2 LINE L2 -25 3247 3115 455 165 76 25 chrX 46719548 46719627 -115880303 + AluY SINE Alu 3 85 -233 * 809 152 214 0 chrX 46719620 46719765 -115880165 + AluSg/x SINE Alu 128 303 -6 650 308 93 9 chrX 46720420 46720741 -115879189 + L1ME LINE L1 5457 5804 -317 555 226 71 36 chrX 46721973 46722356 -115877574 + L1MC4a LINE L1 7373 7723 -98 250 265 44 0 chrX 46722459 46722527 -115877403 + L1MC4 LINE L1 7952 8022 -20 6478 68 16 37 chrX 46722553 46723702 -115876228 - SVA Other Other -551 1386 433 5774 60 21 81 chrX 46723721 46725031 -115874899 - SVA Other Other -518 868 1 26 0 0 0 chrX 46725044 46725070 -115874860 + AT_rich Low_complexity Low_complexity 1 26 0 255 192 39 0 chrX 46725522 46725574 -115874356 - LTR43-int LTR ERV1 -3576 1222 1169 194 319 131 77 chrX 46727968 46728228 -115871702 - L2 LINE L2 -31 3241 2968 1762 88 0 18 chrX 46728878 46729105 -115870825 + AluSq SINE Alu 1 223 -90 705 198 0 8 chrX 46729118 46729239 -115870691 + AluSp/q SINE Alu 172 291 -22 265 324 173 15 chrX 46729331 46729667 -115870263 - L2 LINE L2 -645 2669 2281 1637 225 165 51 chrX 46730052 46730859 -115869071 - L1ME3 LINE L1 -3 6159 5250 1762 153 55 4 chrX 46730881 46731156 -115868774 - AluJo SINE Alu -23 289 1 454 311 92 5 chrX 46731263 46731484 -115868446 - MIR SINE MIR -8 254 17 620 153 72 0 chrX 46731621 46731732 -115868198 - L1MB5 LINE L1 -8 6166 6048 185 125 75 113 chrX 46731915 46731995 -115867935 + L2 LINE L2 3177 3253 -19 954 190 25 13 chrX 46732204 46732362 -115867568 + FAM SINE Alu 5 164 -11 29 47 0 0 chrX 46732363 46732406 -115867524 + AT_rich Low_complexity Low_complexity 1 43 0 210 250 0 0 chrX 46732502 46732546 -115867384 + MIR SINE MIR 110 153 -109 23 0 0 0 chrX 46733133 46733156 -115866774 + AT_rich Low_complexity Low_complexity 1 23 0 1673 133 53 21 chrX 46733161 46733446 -115866484 + AluJo SINE Alu 1 294 -18 286 233 90 109 chrX 46734305 46734571 -115865359 - L1MC5 LINE L1 -375 7586 7326 316 267 48 36 chrX 46734712 46734877 -115865053 - L1MC4 LINE L1 -761 7281 7115 268 264 11 11 chrX 46735088 46735179 -115864751 - L1MC4 LINE L1 -1040 7002 6912 1032 285 109 25 chrX 46735290 46735777 -115864153 - L1MC4 LINE L1 -149 7893 7366 883 159 40 7 chrX 46735778 46735929 -115864001 + AluJo SINE Alu 46 201 -111 760 171 108 0 chrX 46736032 46736161 -115863769 - FLAM_C SINE Alu 0 143 1 452 297 81 0 chrX 46736163 46736311 -115863619 - L1MC4 LINE L1 -1116 6926 6767 235 188 0 0 chrX 46736311 46736359 -115863571 + LTR66 LTR ERVL 391 438 -172 330 123 0 0 chrX 46736360 46736417 -115863513 + (CATA)n Simple_repeat Simple_repeat 4 60 0 487 185 0 0 chrX 46736597 46736678 -115863252 + FLAM SINE Alu 45 125 -18 431 201 106 0 chrX 46739176 46739289 -115860641 - MIR SINE MIR -67 141 37 204 135 0 0 chrX 46740175 46740212 -115859718 + (GGA)n Simple_repeat Simple_repeat 3 39 0 228 231 46 146 chrX 46741189 46741319 -115858611 + MIR3 SINE MIR 91 207 -1 453 279 177 28 chrX 46741362 46741783 -115858147 - L2 LINE L2 -8 3264 2550 256 271 243 0 chrX 46742358 46742465 -115857465 - L2 LINE L2 -3 3310 3178 21 0 0 0 chrX 46745579 46745600 -115854330 + AT_rich Low_complexity Low_complexity 1 21 0 2322 108 0 3 chrX 46746387 46746693 -115853237 + AluSx SINE Alu 1 305 -7 2041 143 7 3 chrX 46746703 46746997 -115852933 + AluJb SINE Alu 1 295 -17 730 113 81 65 chrX 46747978 46748102 -115851828 + FLAM_C SINE Alu 2 127 -6 348 259 89 9 chrX 46748124 46748236 -115851694 - MIR SINE MIR -68 140 20 1857 128 0 0 chrX 46748482 46748769 -115851161 - AluSx SINE Alu 0 320 34 282 318 94 47 chrX 46749262 46749454 -115850476 + MIR SINE MIR 4 204 -58 1605 183 11 14 chrX 46749619 46749904 -115850026 + AluJo SINE Alu 1 284 -28 226 370 58 45 chrX 46750812 46750966 -115848964 - MIR3 SINE MIR -51 157 2 367 263 10 0 chrX 46751273 46751372 -115848558 + MIR SINE MIR 45 144 -118 1904 148 3 3 chrX 46751380 46751670 -115848260 + AluSx SINE Alu 1 290 -22 182 185 0 0 chrX 46751743 46751770 -115848160 + L2 LINE L2 3263 3289 -24 261 329 136 0 chrX 46752650 46752790 -115847140 - MIR SINE MIR -56 206 48 363 257 108 47 chrX 46752799 46752947 -115846983 - MIR SINE MIR 0 262 106 231 190 0 0 chrX 46753565 46753623 -115846307 + (CCA)n Simple_repeat Simple_repeat 3 60 0 213 210 0 0 chrX 46753914 46753976 -115845954 + CT-rich Low_complexity Low_complexity 1 62 0 457 212 0 0 chrX 46754349 46754434 -115845496 + AluJ/FRAM SINE Alu 214 298 -14 269 266 192 87 chrX 46755018 46755247 -115844683 + L2 LINE L2 3000 3252 -20 245 279 89 0 chrX 46755467 46755546 -115844384 - MIR3 SINE MIR -45 163 78 553 219 43 82 chrX 46755776 46756009 -115843921 - MIR SINE MIR -8 254 31 441 0 0 0 chrX 46758287 46758336 -115841594 + (CA)n Simple_repeat Simple_repeat 2 50 0 2102 104 14 10 chrX 46758994 46759283 -115840647 - AluSx SINE Alu -22 290 1 1398 224 0 4 chrX 46759301 46759560 -115840370 - AluJo SINE Alu -15 297 40 2265 105 0 22 chrX 46759564 46759877 -115840053 - AluSx SINE Alu -6 306 1 397 202 264 0 chrX 46759891 46760020 -115839910 + MIR SINE MIR 53 215 -47 263 276 0 17 chrX 46760205 46760263 -115839667 - MIR SINE MIR -164 98 42 2326 88 7 0 chrX 46760606 46760901 -115839029 + AluSg SINE Alu 1 297 -13 414 186 12 0 chrX 46761161 46761247 -115838683 + Charlie5 DNA MER1_type 30 116 -2496 461 183 11 21 chrX 46761866 46761959 -115837971 - L1MEc LINE L1 -6271 125 34 1252 244 79 51 chrX 46761976 46762430 -115837500 + L2 LINE L2 241 707 -2607 909 130 0 36 chrX 46762437 46762575 -115837355 + FLAM_C SINE Alu 1 133 0 366 98 0 0 chrX 46762580 46762631 -115837299 + MER66A LTR ERV1 287 337 -141 2010 152 0 0 chrX 46762677 46762966 -115836964 + AluJb SINE Alu 4 292 -20 1309 89 5 0 chrX 46762995 46763185 -115836745 + Tigger4(Zombi) DNA MER2_type 2541 2731 0 914 141 31 0 chrX 46763185 46763348 -115836582 - L1M4 LINE L1 -391 5783 5616 1724 205 39 39 chrX 46763435 46763844 -115836086 + LTR2 LTR ERV1 41 449 0 2287 102 0 13 chrX 46763853 46764157 -115835773 - AluSc SINE Alu -9 300 1 189 0 0 0 chrX 46764159 46764180 -115835750 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1840 138 36 18 chrX 46764181 46764457 -115835473 - AluSx SINE Alu -31 281 1 540 207 0 0 chrX 46764462 46764573 -115835357 - Tigger2 DNA MER2_type -2606 112 2 1154 183 53 8 chrX 46764575 46764821 -115835109 + LTR54 LTR ERV1 254 510 0 1033 130 169 73 chrX 46764905 46765029 -115834901 - LTR49 LTR ERV1 0 595 484 1632 159 82 55 chrX 46765029 46765322 -115834608 + THE1C LTR MaLR 1 307 -68 2216 129 6 0 chrX 46765322 46765633 -115834297 + AluSq SINE Alu 1 313 0 1632 159 82 55 chrX 46765633 46765704 -115834226 + THE1C LTR MaLR 307 375 0 1033 130 169 73 chrX 46765704 46765880 -115834050 - LTR49 LTR ERV1 -111 484 266 740 154 0 0 chrX 46765880 46765984 -115833946 + AluSq/x SINE Alu 2 105 -207 628 174 0 9 chrX 46766093 46766202 -115833728 - Tigger3(Golem) DNA MER2_type -2921 108 1 1610 123 0 0 chrX 46766237 46766456 -115833474 - AluSx SINE Alu -93 219 1 672 248 13 0 chrX 46766456 46766609 -115833321 + MSTB LTR MaLR 45 199 -227 2051 124 30 7 chrX 46766610 46766909 -115833021 + AluSx SINE Alu 1 306 -6 575 97 9 35 chrX 46766924 46767037 -115832893 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 264 202 34 79 chrX 46767037 46767126 -115832804 + MSTB LTR MaLR 189 273 -159 933 183 18 0 chrX 46767128 46767297 -115832633 - MER58 DNA MER1_type -2248 172 1 1110 209 69 69 chrX 46767311 46767647 -115832283 + MLT1L LTR MaLR 180 518 -97 1406 145 44 4 chrX 46767647 46767874 -115832056 + MER46A DNA MER2_type 1 236 0 1110 209 69 69 chrX 46767874 46767915 -115832015 + MLT1L LTR MaLR 517 557 -58 2374 97 10 10 chrX 46767917 46768226 -115831704 - AluSp SINE Alu -4 309 1 533 192 42 0 chrX 46768317 46768437 -115831493 + L1ME1 LINE L1 5144 5268 -878 587 180 0 0 chrX 46768437 46768537 -115831393 - Tigger7 DNA MER2_type 0 2487 2388 * 1449 181 0 23 chrX 46768534 46768799 -115831131 - Tigger7 DNA MER2_type -466 267 9 1623 159 69 72 chrX 46768803 46768911 -115831019 - MSTB1 LTR MaLR -8 424 317 1773 143 21 21 chrX 46768911 46769191 -115830739 + AluJo SINE Alu 1 280 -32 196 0 118 0 chrX 46769191 46769225 -115830705 + A-rich Low_complexity Low_complexity 3 40 0 1623 159 69 72 chrX 46769225 46769505 -115830425 - MSTB1 LTR MaLR -113 319 36 8775 187 29 12 chrX 46769519 46769598 -115830332 - MSTB1-int LTR MaLR 0 1651 1575 1778 159 10 17 chrX 46769598 46769893 -115830037 - AluJb SINE Alu -5 307 15 8775 187 29 12 chrX 46769893 46770979 -115828951 - MSTB1-int LTR MaLR -76 1575 509 2206 130 3 0 chrX 46770979 46771279 -115828651 - AluSq SINE Alu -12 301 1 8775 187 29 12 chrX 46771279 46771392 -115828538 - MSTB1-int LTR MaLR -1142 509 399 2397 75 0 0 chrX 46771392 46771686 -115828244 - AluY SINE Alu -17 294 1 8775 187 29 12 chrX 46771686 46772029 -115827901 - MSTB1-int LTR MaLR -1252 399 1 1233 188 53 0 chrX 46772029 46772274 -115827656 - MSTB1 LTR MaLR 0 432 175 885 150 0 0 chrX 46772275 46772408 -115827522 + AluJo SINE Alu 2 134 -178 731 191 53 75 chrX 46772422 46772556 -115827374 - MSTB1 LTR MaLR -242 184 54 2603 61 0 3 chrX 46772556 46772867 -115827063 - AluY SINE Alu -1 310 1 731 191 53 75 chrX 46772867 46772920 -115827010 - MSTB1 LTR MaLR -372 54 1 2410 204 36 88 chrX 46772921 46773288 -115826642 + L1ME1 LINE L1 5257 5642 -524 10578 68 14 16 chrX 46773288 46774677 -115825253 - SVA Other Other 0 1386 1 2410 204 36 88 chrX 46774677 46774894 -115825036 + L1ME1 LINE L1 5642 5790 -376 1602 156 24 73 chrX 46774894 46775222 -115824708 + AluJo SINE Alu 1 312 0 2410 204 36 88 chrX 46775222 46775445 -115824485 + L1ME1 LINE L1 5790 6023 -143 2239 124 0 0 chrX 46775445 46775736 -115824194 + AluSx SINE Alu 1 291 -21 2029 153 52 30 chrX 46775759 46776304 -115823626 + MLT2A2 LTR ERVL 1 554 0 324 254 35 35 chrX 46776306 46776420 -115823510 + L1MB7 LINE L1 6071 6184 0 2405 103 3 0 chrX 46776450 46776761 -115823169 - AluSx SINE Alu 0 312 1 606 112 11 0 chrX 46776925 46777014 -115822916 + L1MC2 LINE L1 6247 6336 -8 554 292 56 0 chrX 46777319 46777497 -115822433 + MER5A DNA MER1_type 1 188 -1 2189 116 3 0 chrX 46777812 46778106 -115821824 - AluSx SINE Alu -17 295 1 279 0 0 0 chrX 46778811 46778842 -115821088 + (CA)n Simple_repeat Simple_repeat 2 32 0 923 253 133 37 chrX 46778922 46779381 -115820549 - MLT1L LTR MaLR -108 507 5 1402 223 150 28 chrX 46780809 46781302 -115818628 + LTR67 LTR ERVL 4 556 -1 499 208 46 8 chrX 46782151 46782281 -115817649 + L1ME1 LINE L1 6015 6149 -17 609 231 16 0 chrX 46782289 46782410 -115817520 + FLAM_A SINE Alu 2 124 -9 2409 65 0 0 chrX 46782417 46782707 -115817223 + AluY SINE Alu 1 290 -21 1860 180 0 3 chrX 46782884 46783184 -115816746 - AluJo SINE Alu -13 299 1 895 139 0 0 chrX 46783196 46783325 -115816605 - FLAM_C SINE Alu -4 129 1 2121 149 0 9 chrX 46783452 46783767 -115816163 + AluJb SINE Alu 1 312 0 830 203 7 7 chrX 46784037 46784190 -115815740 + MER5B DNA MER1_type 1 153 -25 2174 143 2 56 chrX 46784248 46784315 -115815615 - MLT1B LTR MaLR 0 390 321 2503 66 10 3 chrX 46784315 46784619 -115815311 + AluSc SINE Alu 1 306 -3 2174 143 2 56 chrX 46784619 46784963 -115814967 - MLT1B LTR MaLR -69 321 1 2422 81 3 0 chrX 46784997 46785294 -115814636 - AluSq SINE Alu -15 298 1 420 211 139 53 chrX 46786063 46786271 -115813659 + L1MC4 LINE L1 7505 7730 -312 483 266 80 13 chrX 46786330 46786556 -115813374 + L1ME4a LINE L1 5877 6117 -4 1776 146 65 4 chrX 46786583 46786858 -115813072 + AluJo SINE Alu 1 292 -20 2143 104 10 10 chrX 46786886 46787183 -115812747 + AluJb SINE Alu 1 297 -15 2513 87 0 0 chrX 46787656 46787965 -115811965 + AluSg SINE Alu 1 309 -1 724 156 23 0 chrX 46788135 46788263 -115811667 - MLT1D LTR MaLR 0 505 375 832 102 23 0 chrX 46788272 46788400 -115811530 - MER101 LTR ERV1 0 474 344 807 184 0 0 chrX 46788446 46788571 -115811359 - FRAM SINE Alu -48 128 4 1106 147 13 89 chrX 46788573 46788798 -115811132 - MER101 LTR ERV1 -133 341 134 2252 94 11 0 chrX 46788798 46789096 -115810834 + AluSx SINE Alu 3 303 0 1373 120 0 39 chrX 46789192 46789400 -115810530 + AluSg/x SINE Alu 97 296 -14 853 128 28 7 chrX 46789400 46789541 -115810389 - MER101 LTR ERV1 -330 144 1 1224 226 152 18 chrX 46789541 46789930 -115810000 - MLT1E2 LTR MaLR -167 459 19 273 252 75 0 chrX 46790329 46790436 -115809494 - L1MC4 LINE L1 0 8042 7928 280 258 108 8 chrX 46790617 46790737 -115809193 - L1ME3A LINE L1 -275 5895 5764 * 435 299 0 49 chrX 46790705 46790847 -115809083 - L1M1 LINE L1 -547 5604 5492 2434 88 3 0 chrX 46790847 46791154 -115808776 - AluSp SINE Alu -5 308 1 435 299 0 49 chrX 46791154 46791228 -115808702 - L1M1 LINE L1 -659 5492 5416 331 296 20 20 chrX 46791344 46791442 -115808488 - L1MEd LINE L1 -5920 199 102 741 233 108 85 chrX 46791494 46791850 -115808080 + L1MC4 LINE L1 7596 7965 -77 2045 104 9 57 chrX 46791850 46792167 -115807763 + AluSx SINE Alu 1 302 -10 741 233 108 85 chrX 46792167 46792247 -115807683 + L1MC4 LINE L1 7965 8042 0 1215 179 128 12 chrX 46792329 46792586 -115807344 - AluSg1 SINE Alu -22 287 1 1904 139 3 20 chrX 46792624 46792918 -115807012 - AluJo SINE Alu -23 289 1 471 307 93 20 chrX 46792989 46793443 -115806487 - MLT1J LTR MaLR 0 511 3 2171 101 0 7 chrX 46793878 46794174 -115805756 + AluSx SINE Alu 1 294 -18 2596 196 84 25 chrX 46794275 46794847 -115805083 - MLT1E2 LTR MaLR 0 626 21 442 207 73 73 chrX 46795349 46795528 -115804402 - L1MC5 LINE L1 -51 7910 7732 220 133 0 22 chrX 46795917 46795962 -115803968 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 8325 17 0 0 chrX 46795986 46797481 -115802449 + L1PA2 LINE L1 4657 6150 -5 797 269 21 21 chrX 46799055 46799293 -115800637 + Charlie8 DNA MER1_type 7 244 -2173 671 209 29 112 chrX 46799921 46800106 -115799824 - MER112 DNA MER1_type 0 256 100 369 0 0 0 chrX 46800106 46800147 -115799783 + (TG)n Simple_repeat Simple_repeat 2 42 0 671 209 29 112 chrX 46800147 46800239 -115799691 - MER112 DNA MER1_type -156 100 2 289 300 0 27 chrX 46800633 46800743 -115799187 + MLT1L LTR MaLR 1 107 -508 836 160 88 11 chrX 46800754 46800935 -115798995 - MER5C DNA MER1_type -125 199 5 1013 247 118 35 chrX 46800935 46801330 -115798600 + MLT1L LTR MaLR 144 466 -45 696 225 99 31 chrX 46801554 46801776 -115798154 - L1ME1 LINE L1 -25 6141 5905 2107 125 7 0 chrX 46801776 46802073 -115797857 + AluSx SINE Alu 1 299 -13 1401 78 0 6 chrX 46802073 46802252 -115797678 + AluSp SINE Alu 134 311 -2 469 124 124 0 chrX 46802257 46802346 -115797584 - L1M4 LINE L1 -1083 5063 4964 2478 214 73 25 chrX 46802347 46802914 -115797016 - L1M4 LINE L1 -1295 4851 4248 312 27 0 0 chrX 46802914 46802951 -115796979 + (TG)n Simple_repeat Simple_repeat 1 37 0 2478 214 73 25 chrX 46802951 46803024 -115796906 - L1M4 LINE L1 -1898 4248 4180 498 213 109 20 chrX 46803251 46803426 -115796504 - MIR SINE MIR -16 246 12 892 295 56 40 chrX 46803428 46804357 -115795573 + L1ME LINE L1 4801 5745 -376 201 151 132 38 chrX 46804482 46804535 -115795395 + MIR SINE MIR 93 150 -112 421 274 26 9 chrX 46804539 46804652 -115795278 - L2 LINE L2 -10 3262 3148 23 0 0 0 chrX 46804828 46804851 -115795079 + AT_rich Low_complexity Low_complexity 1 23 0 2193 109 0 28 chrX 46805196 46805516 -115794414 + AluSx SINE Alu 1 311 -1 598 163 0 11 chrX 46805565 46805657 -115794273 + FRAM SINE Alu 72 162 -14 519 309 102 37 chrX 46805760 46806162 -115793768 + L1MC4a LINE L1 2680 3107 -3039 1539 116 38 96 chrX 46806399 46806807 -115793123 + AluJo SINE Alu 7 397 0 649 257 72 116 chrX 46806812 46807042 -115792888 + L1MC4a LINE L1 5396 5635 -486 1840 119 7 70 chrX 46807042 46807344 -115792586 + AluJb SINE Alu 12 294 -18 649 257 72 116 chrX 46807344 46807715 -115792215 + L1MC4a LINE L1 5635 5906 -215 1815 123 11 18 chrX 46807877 46808154 -115791776 + AluJb SINE Alu 20 294 -18 214 229 33 0 chrX 46808626 46808687 -115791243 - MIR SINE MIR -10 252 190 208 193 70 0 chrX 46809078 46809135 -115790795 + (CTGGGG)n Simple_repeat Simple_repeat 2 62 0 1328 253 38 38 chrX 46809796 46810215 -115789715 - L1MC/D LINE L1 -2014 5794 5376 394 289 132 36 chrX 46810247 46810634 -115789296 + L1M4 LINE L1 4327 4750 -1396 294 176 88 33 chrX 46811003 46811094 -115788836 - L1MC/D LINE L1 -2338 5470 5375 284 218 184 0 chrX 46813463 46813550 -115786380 + MIR SINE MIR 84 186 -76 189 0 0 0 chrX 46813552 46813573 -115786357 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 2385 47 7 0 chrX 46814324 46814599 -115785331 - AluSc SINE Alu -12 297 21 370 203 120 15 chrX 46815975 46816108 -115783822 - L1MC5 LINE L1 -14 7947 7801 841 139 0 29 chrX 46816120 46816257 -115783673 - AluJb SINE Alu -179 133 1 1047 246 67 30 chrX 46816257 46816687 -115783243 - L1MC5 LINE L1 -144 7817 7372 238 247 78 0 chrX 46817702 46817779 -115782151 + L3 LINE CR1 1485 1567 -10 22 0 0 0 chrX 46818150 46818172 -115781758 + AT_rich Low_complexity Low_complexity 1 22 0 948 230 24 19 chrX 46818234 46818442 -115781488 + MIR SINE MIR 8 216 -46 841 147 35 7 chrX 46818442 46818585 -115781345 - MER5A DNA MER1_type 0 189 43 1745 185 90 85 chrX 46818586 46819197 -115780733 - L1MC5 LINE L1 -594 7367 6754 254 254 301 12 chrX 46819386 46819559 -115780371 + MIR SINE MIR 34 256 -6 273 296 167 9 chrX 46820125 46820233 -115779697 - L2 LINE L2 -5 3267 3143 214 287 53 21 chrX 46820717 46820811 -115779119 + MIR SINE MIR 126 222 -40 321 228 51 0 chrX 46820842 46820921 -115779009 + MIR SINE MIR 72 154 -108 202 203 169 17 chrX 46820920 46820979 -115778951 - L2 LINE L2 -4 3309 3242 * 244 128 43 21 chrX 46821449 46821496 -115778434 - L1ME4a LINE L1 -91 6030 5983 248 267 111 41 chrX 46821619 46821791 -115778139 + L1ME LINE L1 5400 5583 -538 1432 158 186 47 chrX 46822045 46822178 -115777752 + MER46B DNA MER2_type 1 114 -2617 737 159 0 0 chrX 46822178 46822285 -115777645 + L1PB4 LINE L1 6038 6144 -12 1432 158 186 47 chrX 46822285 46822468 -115777462 + MER46B DNA MER2_type 114 236 0 23 0 0 0 chrX 46822623 46822646 -115777284 + AT_rich Low_complexity Low_complexity 1 23 0 551 261 107 38 chrX 46823006 46823204 -115776726 - L1MC4 LINE L1 -9 8033 7803 2396 78 14 0 chrX 46823204 46823498 -115776432 + AluSx SINE Alu 1 298 -14 551 261 107 38 chrX 46823498 46823617 -115776313 - L1MC4 LINE L1 -239 7803 7694 302 171 132 0 chrX 46823702 46823778 -115776152 - L1ME4a LINE L1 -274 5847 5762 261 188 82 71 chrX 46823923 46823947 -115775983 - L1ME LINE L1 -274 5847 5825 2504 45 7 13 chrX 46823947 46824255 -115775675 - AluY SINE Alu -5 306 1 261 188 82 71 chrX 46824255 46824315 -115775615 - L1ME LINE L1 -296 5825 5762 1448 106 19 14 chrX 46824476 46824684 -115775246 - L1PB1 LINE L1 -1 6150 5942 225 237 0 0 chrX 46824897 46824956 -115774974 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 275 345 94 47 chrX 46825263 46825434 -115774496 - MIR3 SINE MIR -23 185 7 404 227 213 7 chrX 46827111 46827252 -115772678 - MIR SINE MIR -87 175 6 2384 97 0 0 chrX 46827304 46827602 -115772328 - AluSg SINE Alu -12 298 1 2170 144 39 8 chrX 46828096 46828451 -115771479 + MER47A DNA MER2_type 1 366 0 222 268 98 71 chrX 46828886 46828998 -115770932 - L2 LINE L2 -18 3254 3140 453 209 93 29 chrX 46829294 46829433 -115770497 - L1MC5 LINE L1 -54 7907 7760 241 265 42 89 chrX 46829480 46829622 -115770308 + MER5A DNA MER1_type 4 157 -32 730 60 0 180 chrX 46829753 46829903 -115770027 - AluJo SINE Alu -177 135 13 224 226 75 0 chrX 46830661 46830714 -115769216 + MIR SINE MIR 34 90 -172 1874 151 0 17 chrX 46831411 46831709 -115768221 + AluJb SINE Alu 1 293 -19 340 312 209 24 chrX 46832196 46832250 -115767680 + L2 LINE L2 1718 1761 -1553 2233 95 0 0 chrX 46832250 46832533 -115767397 - AluSq SINE Alu -30 283 1 340 312 209 24 chrX 46832533 46832818 -115767112 + L2 LINE L2 1761 2120 -1194 715 134 109 25 chrX 46832825 46832944 -115766986 - AluJb SINE Alu -182 130 2 328 341 104 0 chrX 46832945 46833109 -115766821 + L2 LINE L2 2095 2275 -1039 234 293 52 0 chrX 46833105 46833163 -115766767 - L2 LINE L2 -5 3308 3248 * 371 250 59 52 chrX 46833421 46833534 -115766396 - MIR SINE MIR -121 141 28 483 216 196 7 chrX 46833534 46833682 -115766248 - MER5A DNA MER1_type -1 188 13 2630 47 0 0 chrX 46834430 46834729 -115765201 + AluY SINE Alu 1 299 -12 328 273 133 8 chrX 46834733 46834861 -115765069 + MIR SINE MIR 6 149 -113 231 288 14 0 chrX 46835635 46835708 -115764222 + LTR67 LTR ERVL 441 514 -43 6949 171 48 19 chrX 46835889 46837701 -115762229 - L1MC1 LINE L1 0 6333 4575 2527 59 0 3 chrX 46837701 46838006 -115761924 - AluY SINE Alu -7 304 1 6949 171 48 19 chrX 46838006 46838236 -115761694 - L1MC1 LINE L1 -1758 4575 4353 1539 102 195 12 chrX 46838236 46838482 -115761448 - AluSg1 SINE Alu -18 291 1 6949 171 48 19 chrX 46838482 46838672 -115761258 - L1MC1 LINE L1 -1980 4353 3885 1531 199 108 42 chrX 46838676 46839203 -115760727 - L1M4 LINE L1 -1095 5051 4490 1474 97 18 26 chrX 46839206 46839381 -115760549 - AluY SINE Alu -5 306 132 2149 112 0 7 chrX 46839381 46839677 -115760253 - AluSc SINE Alu -12 297 4 1474 97 18 26 chrX 46839677 46839727 -115760203 - AluY SINE Alu -179 132 83 826 240 10 14 chrX 46839771 46839979 -115759951 - L1M4 LINE L1 -1894 4252 4046 265 304 93 37 chrX 46841010 46841280 -115758650 - L1ME4a LINE L1 -207 5914 5630 22 0 0 0 chrX 46841749 46841771 -115758159 + AT_rich Low_complexity Low_complexity 1 22 0 289 241 342 0 chrX 46842338 46842496 -115757434 + MIR SINE MIR 21 232 -30 1436 142 9 0 chrX 46842603 46842822 -115757108 - AluJb SINE Alu -5 307 87 976 165 13 43 chrX 46843602 46843832 -115756098 - L1M3 LINE L1 -692 5476 5254 1127 189 28 12 chrX 46843834 46844082 -115755848 + L1MB1 LINE L1 5856 6107 -82 912 206 144 23 chrX 46844087 46844393 -115755537 - MER2 DNA MER2_type -1 344 2 1051 141 9 59 chrX 46844395 46844615 -115755315 + L1MA10 LINE L1 6111 6319 -15 302 200 0 0 chrX 46844909 46844974 -115754956 - L1ME4a LINE L1 -463 5658 5594 2126 295 43 38 chrX 46845266 46846133 -115753797 + ERVL LTR ERVL 2753 3623 -2141 182 265 48 60 chrX 46846329 46846412 -115753518 - MIR SINE MIR -74 188 107 322 338 76 13 chrX 46846537 46846694 -115753236 - MIR SINE MIR -94 168 2 233 49 73 0 chrX 46847208 46847249 -115752681 + T-rich Low_complexity Low_complexity 2 45 0 1961 141 7 0 chrX 46849317 46849601 -115750329 + AluJo SINE Alu 1 286 -26 285 29 0 0 chrX 46849994 46850028 -115749902 + (TA)n Simple_repeat Simple_repeat 2 35 0 1154 44 0 0 chrX 46850028 46850165 -115749765 - AluY SINE Alu -5 306 170 1841 167 0 23 chrX 46851641 46851947 -115747983 + AluJb SINE Alu 1 299 -13 2231 113 0 7 chrX 46852114 46852415 -115747515 + AluSq SINE Alu 1 299 -14 365 283 127 9 chrX 46852960 46853172 -115746758 + L1ME LINE L1 5322 5558 -604 327 301 40 22 chrX 46853236 46853420 -115746510 + L1MA1 LINE L1 5700 5885 -285 583 136 291 41 chrX 46853585 46853835 -115746095 + Tigger7 DNA MER2_type 1 2477 -10 1979 145 0 3 chrX 46855378 46855681 -115744249 - AluJb SINE Alu -2 310 9 242 309 49 24 chrX 46855840 46855963 -115743967 + MIR SINE MIR 123 248 -14 333 176 40 0 chrX 46856289 46856363 -115743567 - L1MC/D LINE L1 -1992 5816 5740 327 192 120 0 chrX 46856477 46856602 -115743328 - L1ME4a LINE L1 -719 5443 5304 588 180 112 112 chrX 46856979 46857157 -115742773 - MER5A DNA MER1_type -11 178 1 1650 71 0 5 chrX 46857401 46857612 -115742318 - AluY SINE Alu -5 306 97 22 35 0 0 chrX 46857766 46857795 -115742135 + AT_rich Low_complexity Low_complexity 1 29 0 500 325 119 17 chrX 46858420 46858841 -115741089 + L1M4 LINE L1 4673 5136 -1010 274 241 0 13 chrX 46858944 46859023 -115740907 - L1MC/D LINE L1 -377 5744 5667 1915 107 7 21 chrX 46859049 46859330 -115740600 - AluSx SINE Alu -35 277 1 420 256 58 7 chrX 46859392 46859529 -115740401 - L1M4 LINE L1 -6393 149 6 786 223 67 10 chrX 46859596 46859789 -115740141 + MER105 DNA DNA 1 204 0 195 42 0 0 chrX 46859846 46859870 -115740060 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1552 158 18 32 chrX 46860148 46860433 -115739497 + AluJo SINE Alu 1 281 -31 82 48 0 0 chrX 46860463 46860587 -115739343 + AT_rich Low_complexity Low_complexity 1 124 0 38 75 0 0 chrX 46860698 46860778 -115739152 + AT_rich Low_complexity Low_complexity 1 80 0 332 161 22 0 chrX 46861374 46861441 -115738489 - Alu SINE Alu -20 282 236 276 174 71 82 chrX 46864463 46864561 -115735369 + MIR SINE MIR 87 183 -79 223 277 161 19 chrX 46865281 46865436 -115734494 + MIR SINE MIR 57 233 -29 256 320 104 32 chrX 46865491 46865616 -115734314 + L2 LINE L2 3139 3272 0 1635 141 104 18 chrX 46866263 46866589 -115733341 - MER46B DNA MER2_type 0 236 8 22 0 0 0 chrX 46867283 46867305 -115732625 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 46868193 46868217 -115731713 + AT_rich Low_complexity Low_complexity 1 24 0 254 228 130 22 chrX 46868624 46868716 -115731214 + L2 LINE L2 3156 3257 -56 1061 178 0 6 chrX 46868848 46869028 -115730902 + AluJb SINE Alu 50 228 -84 324 0 0 0 chrX 46869510 46869546 -115730384 + (CA)n Simple_repeat Simple_repeat 2 37 0 504 232 0 0 chrX 46869839 46869964 -115729966 + (CCCCAG)n Simple_repeat Simple_repeat 6 130 0 192 77 0 0 chrX 46871225 46871251 -115728679 + (CTTA)n Simple_repeat Simple_repeat 1 26 0 1367 107 0 0 chrX 46871251 46871428 -115728502 - AluSg/x SINE Alu -21 291 115 882 117 0 0 chrX 46871472 46871592 -115728338 + AluSq/x SINE Alu 1 120 -193 784 240 87 28 chrX 46871962 46872283 -115727647 - L1M4 LINE L1 -1824 4322 3983 1704 157 58 24 chrX 46875211 46875504 -115724426 + AluJb SINE Alu 1 303 -9 186 43 0 0 chrX 46876144 46876167 -115723763 + (T)n Simple_repeat Simple_repeat 1 23 0 2265 100 10 3 chrX 46876895 46877194 -115722736 + AluSx SINE Alu 4 304 -8 329 286 124 23 chrX 46877358 46877624 -115722306 - L1M4 LINE L1 -2748 3398 3106 1137 176 142 4 chrX 46879553 46879786 -115720144 + AluJb SINE Alu 1 265 -47 1806 122 0 0 chrX 46880230 46880476 -115719454 + AluSx SINE Alu 3 248 -64 321 355 98 11 chrX 46880750 46880953 -115718977 + MIR SINE MIR 30 258 -4 327 306 25 50 chrX 46881246 46881367 -115718563 + MIR3 SINE MIR 78 195 -13 2164 140 0 7 chrX 46881466 46881773 -115718157 - AluSq SINE Alu -8 305 1 315 0 0 0 chrX 46882262 46882297 -115717633 + (GA)n Simple_repeat Simple_repeat 1 35 0 234 0 0 0 chrX 46882296 46882322 -115717608 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 189 0 0 0 chrX 46885076 46885097 -115714833 + (A)n Simple_repeat Simple_repeat 1 21 0 2184 107 7 0 chrX 46885789 46886080 -115713850 + AluSx SINE Alu 5 297 -15 628 160 0 0 chrX 46886095 46886189 -115713741 + AluJ/FLAM SINE Alu 3 96 -216 272 146 0 0 chrX 46886190 46886231 -115713699 + AluSp SINE Alu 132 172 -131 231 256 190 36 chrX 46887224 46887419 -115712511 - L2 LINE L2 -388 2926 2702 28 0 0 0 chrX 46888076 46888104 -115711826 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrX 46888879 46888903 -115711027 + AT_rich Low_complexity Low_complexity 1 24 0 268 317 43 43 chrX 46889202 46889363 -115710567 - L2 LINE L2 -163 3109 2949 1633 89 0 193 chrX 46889410 46889768 -115710162 + AluSc SINE Alu 3 291 -8 246 313 30 0 chrX 46889904 46890003 -115709927 + L1 LINE L1 3717 3818 -2328 1550 153 42 21 chrX 46890285 46890572 -115709358 + AluJo SINE Alu 1 293 -19 279 191 19 19 chrX 46890648 46890736 -115709194 + L1ME LINE L1 5767 5854 -316 937 154 6 25 chrX 46890747 46890909 -115709021 + AluJb SINE Alu 137 295 -17 1807 161 0 3 chrX 46891108 46891412 -115708518 - AluSx SINE Alu -9 303 1 1883 138 0 25 chrX 46891412 46891730 -115708200 - AluJb SINE Alu 0 312 3 22 0 0 0 chrX 46891853 46891875 -115708055 + AT_rich Low_complexity Low_complexity 1 22 0 1361 147 34 29 chrX 46891913 46892188 -115707742 + LTR54 LTR ERV1 1 301 -197 472 202 32 0 chrX 46892188 46892282 -115707648 - Tigger2 DNA MER2_type -10 2708 2612 869 141 0 7 chrX 46892282 46892417 -115707513 + AluJo SINE Alu 1 134 -178 1881 142 3 7 chrX 46892429 46892725 -115707205 + AluJb SINE Alu 1 295 -17 370 88 0 18 chrX 46892727 46892784 -115707146 - Tigger2 DNA MER2_type -87 2631 2576 1812 119 86 47 chrX 46892784 46893145 -115706785 - THE1C LTR MaLR 0 375 1 10224 113 9 54 chrX 46893145 46893882 -115706048 - THE1C-int LTR MaLR 0 1580 812 2059 137 0 3 chrX 46893882 46894182 -115705748 - AluSx SINE Alu -13 299 1 10224 113 9 54 chrX 46894182 46895096 -115704834 - THE1C-int LTR MaLR -768 812 3 1706 123 35 60 chrX 46895100 46895416 -115704514 - THE1C LTR MaLR -2 373 66 * 9835 109 40 13 chrX 46895415 46896815 -115703115 - Tigger2 DNA MER2_type -137 2581 1137 1878 147 10 3 chrX 46896815 46897122 -115702808 - AluJo SINE Alu -3 309 1 9835 109 40 13 chrX 46897122 46897203 -115702727 - Tigger2 DNA MER2_type -1581 1137 1060 637 178 0 59 chrX 46897219 46897354 -115702576 - FLAM_A SINE Alu -2 140 14 648 183 0 0 chrX 46897393 46897508 -115702422 - AluJ SINE Alu 0 312 198 918 111 0 15 chrX 46897513 46897648 -115702282 - AluJ SINE Alu -179 133 1 5093 111 56 89 chrX 46897648 46898465 -115701465 - Tigger2 DNA MER2_type -1660 1058 276 1958 140 7 10 chrX 46898465 46898773 -115701157 - AluJo SINE Alu -5 307 1 5093 111 56 89 chrX 46898773 46898923 -115701007 - Tigger2 DNA MER2_type -2442 276 123 4070 120 57 15 chrX 46898932 46899582 -115700348 + MER50 LTR ERV1 4 680 -54 1875 169 109 45 chrX 46899582 46900062 -115699868 - LTR10A LTR ERV1 0 548 1 961 108 0 0 chrX 46900099 46900238 -115699692 - AluY SINE Alu -8 303 165 1929 176 79 41 chrX 46900238 46900680 -115699250 - LTR2B LTR ERV1 0 490 32 54963 49 17 14 chrX 46900699 46901226 -115698704 - Harlequin LTR ERV1 0 6896 6372 2458 62 7 0 chrX 46901226 46901531 -115698399 - AluY SINE Alu -4 307 1 54963 49 17 14 chrX 46901531 46907868 -115692062 - Harlequin LTR ERV1 -524 6372 9 2056 190 84 26 chrX 46907876 46908339 -115691591 - LTR2B LTR ERV1 0 490 1 259 119 0 4 chrX 46908339 46908375 -115691555 - AluY SINE Alu -140 161 133 764 140 15 37 chrX 46908375 46908511 -115691419 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chrX 46908513 46908534 -115691396 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1754 130 36 18 chrX 46908535 46908811 -115691119 - AluSx SINE Alu -31 281 1 567 207 0 0 chrX 46908816 46908927 -115691003 - Tigger2 DNA MER2_type -2606 112 2 1209 179 53 8 chrX 46908929 46909175 -115690755 + LTR54 LTR ERV1 254 510 0 2377 117 109 112 chrX 46909259 46909383 -115690547 - LTR49 LTR ERV1 0 595 472 1672 140 82 55 chrX 46909383 46909676 -115690254 + THE1C LTR MaLR 1 307 -68 2060 129 6 0 chrX 46909676 46909987 -115689943 + AluSq SINE Alu 1 313 0 1672 140 82 55 chrX 46909987 46910058 -115689872 + THE1C LTR MaLR 307 375 0 2377 117 109 112 chrX 46910058 46910233 -115689697 - LTR49 LTR ERV1 -123 472 298 2183 121 0 6 chrX 46910233 46910548 -115689382 + AluSq SINE Alu 1 313 0 2377 117 109 112 chrX 46910548 46910844 -115689086 - LTR49 LTR ERV1 -297 298 1 642 218 18 41 chrX 46910844 46911014 -115688916 - LTR49-int LTR ERV1 0 6331 6166 23 33 0 0 chrX 46911014 46911044 -115688886 + AT_rich Low_complexity Low_complexity 1 30 0 825 127 0 8 chrX 46911044 46911170 -115688760 - FLAM_C SINE Alu -18 125 1 1449 111 7 98 chrX 46911171 46911219 -115688711 - LTR49-int LTR ERV1 -155 6176 6125 225 0 0 0 chrX 46911219 46911244 -115688686 + (TTGG)n Simple_repeat Simple_repeat 1 25 0 1874 138 0 11 chrX 46911251 46911534 -115688396 - AluJo SINE Alu -32 280 1 1449 111 7 98 chrX 46911534 46911638 -115688292 - LTR49-int LTR ERV1 -212 6119 6053 2246 92 0 7 chrX 46911638 46911944 -115687986 - AluSq SINE Alu -9 304 1 1449 111 7 98 chrX 46911944 46912079 -115687851 - LTR49-int LTR ERV1 -278 6053 5907 1814 92 69 0 chrX 46912195 46912456 -115687474 + LTR29 LTR ERV1 2 280 -342 1600 158 13 48 chrX 46912462 46912518 -115687412 + AluJb SINE Alu 7 63 -249 2517 47 0 0 chrX 46912518 46912819 -115687111 - AluY SINE Alu -9 302 2 1600 158 13 48 chrX 46912819 46913073 -115686857 + AluJb SINE Alu 63 306 -6 470 17 17 0 chrX 46913109 46913168 -115686762 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 2492 106 11 17 chrX 46913175 46913533 -115686397 + LTR29 LTR ERV1 267 622 0 541 225 13 40 chrX 46913533 46913684 -115686246 - LOR1-int LTR ERV1 -483 4453 4307 * 3163 109 17 126 chrX 46913664 46913841 -115686089 - LOR1-int LTR ERV1 -518 6079 5884 1939 156 0 0 chrX 46913841 46914148 -115685782 - AluSx SINE Alu -5 307 1 2028 132 0 0 chrX 46914150 46914453 -115685477 - AluSx SINE Alu -5 307 5 3163 109 17 126 chrX 46914453 46914529 -115685401 - LOR1-int LTR ERV1 -714 5883 5800 2137 117 0 16 chrX 46914529 46914845 -115685085 - AluSx SINE Alu 0 312 2 3163 109 17 126 chrX 46914845 46915178 -115684752 - LOR1-int LTR ERV1 -797 5800 5432 216 0 0 0 chrX 46915178 46915202 -115684728 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2187 89 20 7 chrX 46915202 46915506 -115684424 + AluY SINE Alu 1 308 -3 2176 85 24 3 chrX 46915508 46915801 -115684129 + AluSq SINE Alu 1 299 -14 3163 109 17 126 chrX 46915801 46915915 -115684015 - LOR1-int LTR ERV1 -1165 5432 5307 6608 61 6 38 chrX 46915915 46917623 -115682307 - SVA Other Other -683 1383 5 3163 109 17 126 chrX 46917623 46917668 -115682262 - LOR1-int LTR ERV1 -1290 5307 4985 3536 125 15 32 chrX 46917669 46918255 -115681675 + MER41B LTR ERV1 3 578 -57 237 75 0 0 chrX 46918246 46918286 -115681644 - AluY SINE Alu 0 308 269 * 539 152 0 33 chrX 46918277 46918289 -115681641 + MER41A LTR ERV1 466 477 -77 1597 71 0 0 chrX 46918289 46918487 -115681443 - AluY SINE Alu -113 198 1 539 152 0 33 chrX 46918487 46918566 -115681364 + MER41A LTR ERV1 477 554 0 2742 171 31 53 chrX 46918566 46918788 -115681142 - LOR1-int LTR ERV1 -1342 4989 4764 2196 100 0 3 chrX 46918788 46919087 -115680843 + AluSq SINE Alu 1 298 -15 1785 62 9 0 chrX 46919088 46919314 -115680616 + AluY SINE Alu 66 293 -18 2742 171 31 53 chrX 46919314 46919801 -115680129 - LOR1-int LTR ERV1 -1566 4765 4294 510 168 105 63 chrX 46919790 46919933 -115679997 - LOR1-int LTR ERV1 -2355 3976 3828 * 1669 139 31 54 chrX 46919933 46920099 -115679831 - AluJb SINE Alu -2 310 153 2171 102 3 0 chrX 46920099 46920392 -115679538 - AluSx SINE Alu -18 294 1 1669 139 31 54 chrX 46920392 46920542 -115679388 - AluJb SINE Alu -159 153 1 738 82 0 0 chrX 46920542 46920639 -115679291 - AluSg/x SINE Alu -8 301 205 234 260 14 0 chrX 46920868 46920941 -115678989 + MER94 DNA DNA 5 78 -56 1632 125 68 32 chrX 46920942 46921222 -115678708 + AluJo SINE Alu 1 290 -22 1945 94 40 4 chrX 46921231 46921508 -115678422 + AluSc SINE Alu 1 287 -22 306 246 0 0 chrX 46921586 46921647 -115678283 + Tigger5 DNA MER2_type 2263 2323 0 1795 179 0 10 chrX 46921647 46921954 -115677976 + MER90 LTR ERV1 272 575 0 731 99 59 0 chrX 46921974 46922075 -115677855 + AluSg/x SINE Alu 151 257 -53 2012 126 0 0 chrX 46922081 46922374 -115677556 - AluJb SINE Alu -19 293 1 1804 146 56 12 chrX 46922375 46922696 -115677234 - LTR26 LTR ERV1 -268 335 1 2300 103 0 0 chrX 46922991 46923302 -115676628 - AluSq SINE Alu -2 311 1 1867 115 7 0 chrX 46923302 46923581 -115676349 - AluSx SINE Alu -23 289 9 1166 164 18 49 chrX 46923655 46923880 -115676050 - MER49 LTR ERV1 -705 218 1 1572 182 7 15 chrX 46923883 46924152 -115675778 - LOR1-int LTR ERV1 -1023 7097 6831 1881 125 7 23 chrX 46924152 46924455 -115675475 + AluJb SINE Alu 1 298 -14 1218 173 31 35 chrX 46924552 46924778 -115675152 - LOR1-int LTR ERV1 -595 6163 5939 412 125 0 0 chrX 46924763 46924827 -115675103 - LOR1-int LTR ERV1 -4136 3984 3921 * 1908 203 30 136 chrX 46924895 46925190 -115674740 - L1M4 LINE L1 -2060 4086 3761 1783 155 0 3 chrX 46925190 46925480 -115674450 - AluJb SINE Alu -22 290 2 1908 203 30 136 chrX 46925480 46925554 -115674376 - L1M4 LINE L1 -2385 3761 3681 2256 93 0 3 chrX 46925554 46925854 -115674076 - AluSq SINE Alu -14 299 1 1908 203 30 136 chrX 46925854 46926037 -115673893 - L1M4 LINE L1 -2465 3681 3480 2250 192 119 23 chrX 46926037 46926606 -115673324 + MLT1E3 LTR MaLR 1 624 0 1908 203 30 136 chrX 46926606 46926699 -115673231 - L1M4 LINE L1 -2666 3480 3538 1640 121 3 140 chrX 46926699 46926912 -115673018 - AluJo SINE Alu -5 307 161 2120 101 0 29 chrX 46926912 46927220 -115672710 - AluSg SINE Alu -11 299 1 1640 121 3 140 chrX 46927220 46927362 -115672568 - AluJo SINE Alu -151 161 1 1908 203 30 136 chrX 46927362 46927522 -115672408 - L1M4 LINE L1 -2607 3539 3364 1474 97 0 0 chrX 46927537 46927733 -115672197 - AluSq SINE Alu -116 197 2 738 189 57 94 chrX 46927734 46927861 -115672069 - L1M4 LINE L1 -3003 3143 3030 1909 142 0 3 chrX 46927861 46928150 -115671780 + AluJo SINE Alu 1 288 -24 738 189 57 94 chrX 46928150 46928287 -115671643 - L1M4 LINE L1 -3116 3030 2889 2185 201 96 41 chrX 46928289 46928949 -115670981 + LTR41 LTR ERVL 1 696 -77 1956 144 3 6 chrX 46929008 46929321 -115670609 - AluJb SINE Alu 0 312 1 329 195 13 26 chrX 46929326 46929403 -115670527 + LTR41 LTR ERVL 698 773 0 2432 71 0 0 chrX 46929721 46930029 -115669901 + AluY SINE Alu 1 308 -3 1933 119 7 0 chrX 46930033 46930348 -115669582 + AluSg1 SINE Alu 1 317 0 4799 287 54 47 chrX 46930640 46931615 -115668315 + ERVL LTR ERVL 775 1742 -4022 2389 61 0 0 chrX 46931615 46931911 -115668019 - AluY SINE Alu -14 297 2 4799 287 54 47 chrX 46931911 46931936 -115667994 + ERVL LTR ERVL 1742 1765 -3999 800 141 0 63 chrX 46931936 46932078 -115667852 - FLAM_C SINE Alu 0 133 1 4799 287 54 47 chrX 46932078 46932466 -115667464 + ERVL LTR ERVL 1765 2149 -3615 1777 140 0 11 chrX 46932466 46932745 -115667185 + AluJo SINE Alu 5 280 -32 4799 287 54 47 chrX 46932745 46933400 -115666530 + ERVL LTR ERVL 2149 2834 -2930 2031 131 13 0 chrX 46933412 46933717 -115666213 + AluSx SINE Alu 4 312 0 1730 157 11 14 chrX 46933727 46933861 -115666069 + AluJb SINE Alu 1 134 -178 2312 69 0 7 chrX 46933861 46934172 -115665758 + AluY SINE Alu 1 311 0 1730 157 11 14 chrX 46934172 46934323 -115665607 + AluJb SINE Alu 134 285 -27 996 9 0 0 chrX 46934323 46934436 -115665494 + (TA)n Simple_repeat Simple_repeat 1 113 0 1768 158 0 48 chrX 46934436 46934752 -115665178 + MLT2D LTR ERVL 114 414 0 5891 268 43 20 chrX 46934759 46934935 -115664995 + ERVL LTR ERVL 2820 2990 -2774 1818 151 0 23 chrX 46934935 46935240 -115664690 - AluJb SINE Alu -14 298 1 5891 268 43 20 chrX 46935240 46935270 -115664660 + ERVL LTR ERVL 2990 3018 -2746 2253 92 3 0 chrX 46935270 46935565 -115664365 - AluSx SINE Alu -16 296 1 5891 268 43 20 chrX 46935565 46937576 -115662354 + ERVL LTR ERVL 3018 5157 -607 186 43 0 0 chrX 46937589 46937612 -115662318 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2044 111 31 0 chrX 46937614 46937903 -115662027 - AluSx SINE Alu -14 298 1 831 253 86 27 chrX 46937943 46938244 -115661686 + ERVL LTR ERVL 5178 5496 -268 707 179 0 0 chrX 46938431 46938543 -115661387 - FRAM SINE Alu -17 159 48 1491 196 25 148 chrX 46938613 46939173 -115660757 + LTR41 LTR ERVL 1 491 -282 1061 112 0 65 chrX 46939304 46939474 -115660456 - FRAM SINE Alu -18 158 1 794 186 41 29 chrX 46939475 46939661 -115660269 - L1MEc LINE L1 -5424 972 781 4799 137 28 27 chrX 46939661 46940445 -115659485 - LTR1 LTR ERV1 0 785 1 794 186 41 29 chrX 46940445 46940500 -115659430 - L1MEc LINE L1 -5615 781 728 982 125 30 71 chrX 46940501 46940669 -115659261 + AluSg/x SINE Alu 132 292 -18 613 232 76 76 chrX 46940693 46940728 -115659202 - L1MEc LINE L1 -5693 703 669 2137 136 3 22 chrX 46940728 46941045 -115658885 - AluJb SINE Alu -1 311 1 613 232 76 76 chrX 46941045 46941246 -115658684 - L1MEc LINE L1 -5726 670 467 4024 95 14 35 chrX 46941247 46941793 -115658137 + MER51A LTR ERV1 2 549 -108 2406 107 0 0 chrX 46941793 46942101 -115657829 - AluSg SINE Alu -2 308 1 4024 95 14 35 chrX 46942101 46942192 -115657738 + MER51A LTR ERV1 549 640 -17 239 89 200 0 chrX 46942203 46942248 -115657682 + MER51A LTR ERV1 581 634 0 1334 228 40 68 chrX 46942254 46942698 -115657232 - L1MEc LINE L1 -5931 465 34 1208 209 54 179 chrX 46942715 46943176 -115656754 + L2 LINE L2 241 758 -2556 909 130 0 36 chrX 46943176 46943314 -115656616 + FLAM_C SINE Alu 1 133 0 366 98 0 0 chrX 46943319 46943370 -115656560 + MER66B LTR ERV1 295 345 -141 1208 209 54 179 chrX 46943370 46943416 -115656514 + L2 LINE L2 762 812 -2502 2039 145 0 0 chrX 46943416 46943705 -115656225 + AluSx SINE Alu 4 292 -20 1208 209 54 179 chrX 46943705 46943899 -115656031 + L2 LINE L2 812 904 -2410 2165 182 12 103 chrX 46943901 46944473 -115655457 - MLT2B1 LTR ERVL 0 520 1 4140 108 95 123 chrX 46944473 46944734 -115655196 - ERVL-B1 LTR ERVL -7 5757 5490 504 143 0 0 chrX 46944734 46944804 -115655126 + AluS SINE Alu 2 71 -241 1671 83 13 40 chrX 46944804 46945032 -115654898 - AluSq SINE Alu -91 222 1 4140 108 95 123 chrX 46945032 46945458 -115654472 - ERVL-B1 LTR ERVL -273 5491 5028 2359 119 0 0 chrX 46945458 46945770 -115654160 + AluSx SINE Alu 1 312 0 4140 108 95 123 chrX 46945770 46945937 -115653993 - ERVL-B1 LTR ERVL -736 5028 4858 245 174 0 0 chrX 46945937 46945983 -115653947 - MLT2B2 LTR ERVL -469 46 1 669 253 109 0 chrX 46945985 46946159 -115653771 + L2 LINE L2 927 1119 -2195 1499 171 12 4 chrX 46946172 46946305 -115653625 - AluJo SINE Alu -58 254 117 191 35 0 35 chrX 46946305 46946334 -115653596 + (TA)n Simple_repeat Simple_repeat 2 29 0 1499 171 12 4 chrX 46946334 46946452 -115653478 - AluJo SINE Alu -195 117 1 275 119 0 17 chrX 46946888 46946947 -115652983 + (TG)n Simple_repeat Simple_repeat 2 59 0 330 26 0 0 chrX 46946947 46946986 -115652944 + (GA)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chrX 46947077 46947097 -115652833 + (GA)n Simple_repeat Simple_repeat 2 21 0 212 122 24 0 chrX 46947258 46947299 -115652631 + GA-rich Low_complexity Low_complexity 4 45 0 779 264 171 26 chrX 46947651 46948003 -115651927 + L2 LINE L2 2910 3312 -1 478 139 10 40 chrX 46948427 46948528 -115651402 - L1MC4a LINE L1 -1773 6035 5938 594 0 0 0 chrX 46948548 46948614 -115651316 + (TTCTC)n Simple_repeat Simple_repeat 4 69 0 1781 146 7 14 chrX 46948616 46948897 -115651033 - AluJo SINE Alu -33 279 1 2000 89 0 4 chrX 46948949 46949206 -115650724 - AluSg SINE Alu -1 309 54 2106 160 7 10 chrX 46949634 46950193 -115649737 + L1MB5 LINE L1 5055 5611 -563 2506 73 0 0 chrX 46950193 46950495 -115649435 + AluY SINE Alu 1 302 -9 1724 205 39 39 chrX 46950504 46950913 -115649017 - LTR2 LTR ERV1 0 449 41 914 141 31 0 chrX 46951000 46951163 -115648767 + L1MB5 LINE L1 5616 5783 -391 1309 89 5 0 chrX 46951163 46951353 -115648577 - MER46B DNA MER2_type 0 236 46 1813 152 0 0 chrX 46951382 46951645 -115648285 - AluJb SINE Alu -20 292 30 2228 106 27 0 chrX 46951645 46951935 -115647995 + AluSx SINE Alu 1 300 -12 554 146 285 0 chrX 46951975 46952119 -115647811 - MER46B DNA MER2_type -176 60 1 260 158 35 18 chrX 46952075 46952132 -115647798 + MER46A DNA MER2_type 101 158 -78 * 1159 192 99 71 chrX 46952132 46952226 -115647704 + L1MB5 LINE L1 5795 5885 -289 2179 132 0 3 chrX 46952226 46952522 -115647408 + AluSx SINE Alu 1 295 -17 1159 192 99 71 chrX 46952522 46952791 -115647139 + L1MB5 LINE L1 5885 6168 -6 664 177 0 0 chrX 46953038 46953151 -115646779 + MER3 DNA MER1_type 1 113 -96 2306 100 0 10 chrX 46953151 46953460 -115646470 + AluSq SINE Alu 1 306 -7 1204 138 0 11 chrX 46953461 46953642 -115646288 + AluSg/x SINE Alu 120 298 -14 2289 110 0 7 chrX 46953644 46953953 -115645977 - AluSc SINE Alu -2 307 1 1374 143 86 9 chrX 46953955 46954234 -115645696 - L1MB3 LINE L1 -83 6100 5813 1757 152 48 0 chrX 46954240 46954509 -115645421 - AluJo SINE Alu -30 282 1 441 88 0 29 chrX 46954510 46954578 -115645352 + MER3 DNA MER1_type 144 209 0 305 161 16 32 chrX 46954523 46954585 -115645345 - MER3 DNA MER1_type -108 101 41 * 2449 93 0 0 chrX 46954776 46955088 -115644842 + AluSx SINE Alu 1 312 0 966 126 61 3 chrX 46955301 46955531 -115644399 - AluJb SINE Alu -10 302 2 1041 172 0 0 chrX 46955536 46955693 -115644237 - FRAM SINE Alu -23 153 1 478 275 0 28 chrX 46955768 46955910 -115644020 - L2 LINE L2 0 3313 3176 980 180 0 50 chrX 46955913 46956113 -115643817 + AluJo SINE Alu 118 307 -5 1787 156 46 3 chrX 46956118 46956401 -115643529 + AluSx SINE Alu 1 295 -17 2324 103 6 16 chrX 46956403 46956715 -115643215 + AluSx SINE Alu 1 309 -3 2116 143 0 10 chrX 46956943 46957257 -115642673 + AluJb SINE Alu 1 311 -1 236 170 19 0 chrX 46957257 46957310 -115642620 + GA-rich Low_complexity Low_complexity 1 54 0 1151 102 6 0 chrX 46957317 46957494 -115642436 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2412 99 0 0 chrX 46957849 46958161 -115641769 + AluSx SINE Alu 1 312 0 798 92 15 8 chrX 46958161 46958292 -115641638 + (GGAA)n Simple_repeat Simple_repeat 2 133 0 449 136 49 0 chrX 46958533 46958614 -115641316 - LTR61 LTR ERV1 0 595 511 * 707 93 37 0 chrX 46958607 46958714 -115641216 + LTR61 LTR ERV1 485 595 0 1694 76 80 80 chrX 46958843 46959157 -115640773 - LTR61 LTR ERV1 -281 314 1 533 105 59 171 chrX 46959480 46959536 -115640394 + MER65B LTR ERV1 1 62 -469 244 0 56 0 chrX 46959536 46959572 -115640358 + (CAA)n Simple_repeat Simple_repeat 2 39 0 533 105 59 171 chrX 46959572 46959583 -115640347 + MER65B LTR ERV1 62 73 -458 2321 84 0 3 chrX 46959583 46959896 -115640034 + AluSq SINE Alu 1 312 0 533 105 59 171 chrX 46959896 46959978 -115639952 + MER65B LTR ERV1 73 135 -396 1036 217 5 9 chrX 46959993 46960210 -115639720 + AluJo SINE Alu 5 220 -92 241 75 0 113 chrX 46960212 46960265 -115639665 + Alu SINE Alu 87 133 0 881 176 26 7 chrX 46960267 46960420 -115639510 - FRAM SINE Alu -23 153 1 1790 118 44 34 chrX 46960434 46960710 -115639220 + MER65A LTR ERV1 121 402 -43 2496 80 3 0 chrX 46960710 46961012 -115638918 - AluSg SINE Alu -7 303 1 1790 118 44 34 chrX 46961012 46961056 -115638874 + MER65A LTR ERV1 402 444 -1 894 127 0 0 chrX 46961352 46961470 -115638460 + FLAM_C SINE Alu 1 118 -25 216 0 0 0 chrX 46961472 46961496 -115638434 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2093 114 40 0 chrX 46961504 46961802 -115638128 + AluSx SINE Alu 1 310 -2 590 303 20 47 chrX 46961811 46962174 -115637756 - L1MCb LINE L1 -5720 325 89 1112 155 0 0 chrX 46962248 46962409 -115637521 - FRAM SINE Alu -16 160 1 2324 92 10 7 chrX 46963162 46963466 -115636464 - AluSx SINE Alu -7 305 1 1999 118 53 0 chrX 46963561 46963884 -115636046 + L1PA16 LINE L1 5637 5976 -190 2543 81 3 0 chrX 46964880 46965189 -115634741 + AluSp SINE Alu 1 310 -3 2281 88 40 0 chrX 46965189 46965485 -115634445 + AluSc SINE Alu 1 308 -1 350 135 0 0 chrX 46965842 46965894 -115634036 - MER66B LTR ERV1 -140 346 295 1369 94 0 0 chrX 46965905 46966118 -115633812 - AluSg/x SINE Alu 0 338 126 1222 172 5 0 chrX 46966217 46966420 -115633510 + L1PA16 LINE L1 5959 6162 -4 1959 148 24 0 chrX 46966440 46966730 -115633200 - AluJb SINE Alu -15 297 1 851 157 5 90 chrX 46966752 46966904 -115633026 + L1PA16 LINE L1 5889 5978 -178 2244 119 3 0 chrX 46966904 46967215 -115632715 + AluSx SINE Alu 1 312 0 851 157 5 90 chrX 46967215 46967374 -115632556 + L1PA16 LINE L1 5978 6149 -7 2444 65 3 0 chrX 46967375 46967667 -115632263 - AluY SINE Alu -17 294 2 1194 192 156 42 chrX 46967695 46968054 -115631876 + L1MC4a LINE L1 5521 5920 -1888 845 135 8 0 chrX 46968071 46968197 -115631733 + AluSg/x SINE Alu 182 308 -4 433 229 257 7 chrX 46968346 46968490 -115631440 + MIR SINE MIR 67 246 -16 1803 162 17 7 chrX 46968490 46968780 -115631150 + AluJb SINE Alu 1 293 -19 474 230 0 44 chrX 46968866 46968979 -115630951 + MER5B DNA MER1_type 3 110 -68 896 139 0 15 chrX 46969026 46969163 -115630767 - AluJo SINE Alu -177 135 1 2326 122 0 0 chrX 46969227 46969530 -115630400 + AluSx SINE Alu 1 303 -9 2441 45 10 7 chrX 46969556 46969847 -115630083 + AluY SINE Alu 1 292 -19 372 275 16 88 chrX 46969882 46970075 -115629855 + L2 LINE L2 2881 3059 -213 649 270 75 86 chrX 46970198 46970557 -115629373 + L2 LINE L2 2910 3264 -8 238 319 87 51 chrX 46970625 46970763 -115629167 - L3 LINE CR1 -488 1089 947 753 261 0 33 chrX 46970866 46971050 -115628880 + MER5B DNA MER1_type 1 178 0 227 250 0 60 chrX 46971089 46971173 -115628757 + CT-rich Low_complexity Low_complexity 5 83 0 226 173 291 36 chrX 46971231 46971341 -115628589 + MIR3 SINE MIR 13 150 -58 2305 110 0 0 chrX 46971745 46972044 -115627886 + AluSq SINE Alu 1 299 -14 21 57 0 0 chrX 46972138 46972173 -115627757 + AT_rich Low_complexity Low_complexity 1 35 0 1821 128 0 0 chrX 46972174 46972425 -115627505 - AluSx SINE Alu -20 292 42 362 103 0 0 chrX 46972426 46972482 -115627448 - AluSg/x SINE Alu -95 207 158 357 134 0 13 chrX 46972473 46972541 -115627389 - AluSx SINE Alu -252 49 1 * 2228 107 10 3 chrX 46972813 46973112 -115626818 + AluSx SINE Alu 1 301 -11 2264 116 3 0 chrX 46973504 46973796 -115626134 - AluSx SINE Alu -19 293 1 2088 142 54 20 chrX 46973824 46973849 -115626081 - MLT1A1 LTR MaLR 0 365 342 180 0 0 0 chrX 46973849 46973869 -115626061 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2088 142 54 20 chrX 46973869 46974196 -115625734 - MLT1A1 LTR MaLR -23 342 1 325 321 9 46 chrX 46974311 46974420 -115625510 - MER91A DNA MER1_type -91 105 1 261 257 76 76 chrX 46974539 46974710 -115625220 + L2 LINE L2 2871 3041 -272 836 224 49 32 chrX 46974749 46974995 -115624935 + MER67B LTR ERV1 5 254 -407 2132 99 23 7 chrX 46974995 46975297 -115624633 + AluYa5 SINE Alu 5 311 0 362 120 0 0 chrX 46975316 46975366 -115624564 + Alu SINE Alu 1 50 -249 1076 92 42 0 chrX 46975367 46975509 -115624421 + AluSg/x SINE Alu 150 297 -15 639 136 45 0 chrX 46975511 46975621 -115624309 + MER67B LTR ERV1 543 657 -4 312 237 172 32 chrX 46975644 46975737 -115624193 + L2 LINE L2 3208 3313 0 2148 98 0 21 chrX 46975763 46976070 -115623860 + AluSx SINE Alu 1 301 0 190 250 143 0 chrX 46976156 46976212 -115623718 + MIR SINE MIR 36 99 -163 1875 150 0 20 chrX 46976233 46976527 -115623403 + AluJb SINE Alu 1 288 -24 842 132 0 23 chrX 46976536 46976665 -115623265 - FLAM_C SINE Alu -17 126 1 1826 182 57 76 chrX 46976677 46977150 -115622780 + MER31B LTR ERV1 1 464 -2 956 196 26 10 chrX 46977292 46977486 -115622444 + MIR SINE MIR 2 198 -64 2521 76 0 0 chrX 46977487 46977789 -115622141 + AluSc SINE Alu 1 302 -7 1176 85 0 0 chrX 46977800 46977941 -115621989 + AluSq/x SINE Alu 1 141 -171 2058 95 0 61 chrX 46977942 46978278 -115621652 + AluSx SINE Alu 12 329 0 200 224 0 41 chrX 46979815 46979864 -115620066 - MIR SINE MIR -99 163 117 202 330 0 20 chrX 46980368 46980468 -115619462 + CT-rich Low_complexity Low_complexity 4 101 0 247 284 84 42 chrX 46980747 46980842 -115619088 - L2 LINE L2 0 3272 3174 958 158 16 32 chrX 46980921 46981051 -115618879 + MER53 DNA DNA 1 129 -60 2216 105 28 0 chrX 46981051 46981337 -115618593 + AluSx SINE Alu 1 294 -18 958 158 16 32 chrX 46981337 46981396 -115618534 + MER53 DNA DNA 129 187 -2 2449 71 3 0 chrX 46981509 46981804 -115618126 + AluSx SINE Alu 1 296 -16 711 298 256 13 chrX 46981804 46982506 -115617424 - L2 LINE L2 -551 2763 1891 871 167 0 0 chrX 46983078 46983210 -115616720 - FLAM_C SINE Alu -11 132 1 191 299 52 31 chrX 46983250 46983347 -115616583 - L2 LINE L2 -1688 1626 1528 1854 206 81 4 chrX 46983542 46983999 -115615931 + Charlie4a DNA MER1_type 17 508 0 816 202 35 40 chrX 46984014 46984212 -115615718 - MIR SINE MIR -4 258 62 2262 92 14 3 chrX 46984213 46984508 -115615422 + AluSx SINE Alu 1 298 -14 820 283 197 25 chrX 46984733 46984888 -115615042 - L2 LINE L2 0 3313 3186 866 188 40 143 chrX 46984888 46985265 -115614665 + MER46C DNA MER2_type 1 338 0 820 283 197 25 chrX 46985265 46985515 -115614415 - L2 LINE L2 -127 3186 2838 283 278 61 35 chrX 46986199 46986314 -115613616 + L2 LINE L2 3123 3240 -32 344 103 17 0 chrX 46986879 46986937 -115612993 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 180 244 39 118 chrX 46987410 46987537 -115612393 + L3 LINE CR1 1423 1539 -38 2328 100 0 19 chrX 46987717 46988026 -115611904 - AluSx SINE Alu -9 303 1 2221 104 14 0 chrX 46988175 46988464 -115611466 - AluSx SINE Alu -19 293 1 380 293 0 0 chrX 46991381 46991463 -115608467 + MIR SINE MIR 46 127 -81 376 321 129 13 chrX 46991466 46991730 -115608200 - L2 LINE L2 -45 3227 2929 296 173 0 0 chrX 46991739 46991791 -115608139 + L2 LINE L2 2867 2918 -354 236 319 44 35 chrX 46991771 46991884 -115608046 - L2 LINE L2 -31 3282 3169 * 250 259 24 106 chrX 46991955 46992040 -115607890 - L2 LINE L2 -74 3198 3121 517 147 78 0 chrX 46992055 46992157 -115607773 - MIR SINE MIR -90 172 63 836 296 140 17 chrX 46993118 46993590 -115606340 + L2 LINE L2 2734 3259 -13 381 279 7 68 chrX 46993710 46993857 -115606073 - MIR SINE MIR -62 146 9 245 169 0 108 chrX 46993922 46993987 -115605943 - L1MC4a LINE L1 -1680 6128 6071 1868 145 7 0 chrX 46994044 46994326 -115605604 - AluSx SINE Alu -26 286 3 520 315 59 69 chrX 46994859 46995234 -115604696 + L2 LINE L2 2511 2881 -433 384 243 328 32 chrX 46995234 46995481 -115604449 + L2 LINE L2 2394 2713 -601 225 0 0 0 chrX 46995490 46995515 -115604415 + (T)n Simple_repeat Simple_repeat 1 25 0 774 294 87 7 chrX 46995616 46995904 -115604026 + L2 LINE L2 2675 2982 -290 1058 98 7 0 chrX 46995976 46996119 -115603811 - AluY SINE Alu -167 144 1 761 126 67 17 chrX 46996127 46996246 -115603684 - FLAM_C SINE Alu -7 126 2 397 181 0 0 chrX 46996248 46996320 -115603610 - L1 LINE L1 -1132 5014 4943 31 0 0 0 chrX 46996339 46996370 -115603560 + AT_rich Low_complexity Low_complexity 1 31 0 1438 82 5 10 chrX 46996370 46996565 -115603365 + AluSg SINE Alu 1 194 -116 1285 154 0 9 chrX 46996569 46996790 -115603140 - AluJo SINE Alu -7 305 87 1476 178 20 14 chrX 46996944 46997237 -115602693 - AluJb SINE Alu -17 295 1 21 0 0 0 chrX 46998745 46998766 -115601164 + GC_rich Low_complexity Low_complexity 1 21 0 535 290 102 28 chrX 46999188 46999443 -115600487 - L2 LINE L2 0 3313 3040 1032 197 6 0 chrX 46999616 46999794 -115600136 - MER20 DNA MER1_type -2 217 39 2019 132 7 0 chrX 47000478 47000788 -115599142 - AluSx SINE Alu 0 312 1 366 258 52 0 chrX 47000803 47000900 -115599030 - MIR SINE MIR -73 189 88 638 147 0 0 chrX 47001083 47001178 -115598752 - AluSg/x SINE Alu -25 287 193 2277 94 0 0 chrX 47001178 47001486 -115598444 - AluSg SINE Alu -2 308 1 1708 185 0 0 chrX 47001488 47001785 -115598145 - AluJb SINE Alu -15 297 1 2335 82 7 0 chrX 47001965 47002269 -115597661 - AluSx SINE Alu -6 306 1 1469 189 7 0 chrX 47002297 47002578 -115597352 + AluJo SINE Alu 1 283 -29 1473 152 117 8 chrX 47002597 47002861 -115597069 + AluSg SINE Alu 3 295 -15 511 296 73 45 chrX 47003156 47003457 -115596473 - L1MC4 LINE L1 -126 7916 7625 2356 69 3 3 chrX 47003457 47003761 -115596169 - AluSp SINE Alu -9 304 1 511 296 73 45 chrX 47003761 47003943 -115595987 - L1MC4 LINE L1 -417 7625 7311 880 122 0 43 chrX 47003944 47004083 -115595847 + FLAM_C SINE Alu 1 133 0 260 253 13 0 chrX 47004093 47004168 -115595762 - L1MC4a LINE L1 -397 7411 7336 1121 94 26 42 chrX 47004176 47004340 -115595590 - L1MB2 LINE L1 0 6171 6009 2155 105 0 3 chrX 47004340 47004634 -115595296 + AluSc SINE Alu 1 293 -16 1121 94 26 42 chrX 47004634 47004660 -115595270 - L1MB2 LINE L1 -162 6009 5984 26 50 0 0 chrX 47004660 47004700 -115595230 + AT_rich Low_complexity Low_complexity 1 40 0 2365 84 0 3 chrX 47004700 47005010 -115594920 - AluSx SINE Alu -3 309 1 1057 160 6 0 chrX 47005171 47005346 -115594584 - AluJo/FRAM SINE Alu -3 309 134 1786 114 77 0 chrX 47005346 47005619 -115594311 - AluSx SINE Alu -12 300 7 981 189 5 21 chrX 47006517 47006707 -115593223 + MER5A DNA MER1_type 3 189 0 2266 97 6 0 chrX 47006924 47007235 -115592695 - AluSq SINE Alu 0 313 1 291 271 0 25 chrX 47008008 47008126 -115591804 + GA-rich Low_complexity Low_complexity 5 119 0 443 179 2 4 chrX 47009322 47009406 -115590524 + Tigger4(Zombi) DNA MER2_type 2 2731 0 2211 106 7 0 chrX 47009417 47009720 -115590210 - AluSg SINE Alu -5 305 1 737 244 98 79 chrX 47009753 47009924 -115590006 - MIR SINE MIR -1 261 95 1475 188 3 36 chrX 47009924 47010092 -115589838 - AluJb SINE Alu -9 293 138 1690 107 0 81 chrX 47010092 47010218 -115589712 - AluSx SINE Alu 0 312 177 2237 99 0 3 chrX 47010218 47010531 -115589399 - AluSq SINE Alu -1 312 1 1690 107 0 81 chrX 47010531 47010702 -115589228 - AluSx SINE Alu -135 177 39 1475 188 3 36 chrX 47010702 47010836 -115589094 - AluJb SINE Alu -164 138 1 737 244 98 79 chrX 47010836 47010918 -115589012 - MIR SINE MIR -167 95 3 489 125 10 62 chrX 47011038 47011134 -115588796 + AluJo SINE Alu 45 135 -177 249 110 44 80 chrX 47011213 47011263 -115588667 - MIR SINE MIR -61 147 104 325 322 124 11 chrX 47012011 47012188 -115587742 - MIR SINE MIR -46 216 20 192 40 0 0 chrX 47012188 47012213 -115587717 + (T)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chrX 47012691 47012715 -115587215 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2107 101 0 7 chrX 47012715 47013001 -115586929 - AluSx SINE Alu -28 284 1 210 245 61 0 chrX 47013021 47013070 -115586860 + MIR SINE MIR 175 226 -36 4229 160 120 10 chrX 47013210 47013987 -115585943 - MER21B LTR ERV1 -1 862 1 2205 87 0 0 chrX 47014051 47014339 -115585591 + AluSx SINE Alu 2 289 -23 2585 122 60 58 chrX 47014385 47014810 -115585120 - MER21B-int LTR ERV1 -60 4131 3703 751 221 0 0 chrX 47014810 47014941 -115584989 - FLAM_A SINE Alu -1 132 2 2585 122 60 58 chrX 47014941 47014984 -115584946 - MER21B-int LTR ERV1 -488 3703 3662 404 187 72 191 chrX 47016167 47016318 -115583612 + MIR SINE MIR 34 155 -107 1652 83 43 4 chrX 47016318 47016548 -115583382 + AluSx SINE Alu 56 294 -18 404 187 72 191 chrX 47016548 47016605 -115583325 + MIR SINE MIR 155 217 -45 462 209 43 74 chrX 47016745 47016908 -115583022 + MER46C DNA MER2_type 180 337 -1 516 249 113 49 chrX 47017637 47017822 -115582108 + MIR SINE MIR 1 197 -65 1484 124 60 74 chrX 47017851 47018149 -115581781 - AluJb SINE Alu -6 306 13 2159 86 13 29 chrX 47018161 47018474 -115581456 - AluSg SINE Alu -2 308 1 368 182 0 165 chrX 47018681 47018802 -115581128 - L2 LINE L2 0 3272 3172 186 342 144 0 chrX 47018857 47018968 -115580962 - L2 LINE L2 -7 3306 3180 226 240 80 16 chrX 47019126 47019251 -115580679 + L1ME4a LINE L1 5296 5428 -2380 233 119 24 0 chrX 47019306 47019348 -115580582 + (TA)n Simple_repeat Simple_repeat 1 43 0 365 280 91 59 chrX 47019846 47020164 -115579766 - L2 LINE L2 -179 3093 2776 859 254 30 9 chrX 47020531 47020750 -115579180 - MIR SINE MIR 0 262 36 746 217 63 24 chrX 47020764 47020971 -115578959 + MIR SINE MIR 2 216 -46 251 150 0 0 chrX 47021267 47021307 -115578623 + L1ME4a LINE L1 6000 6039 -82 259 299 133 31 chrX 47021544 47021802 -115578128 + L1ME4a LINE L1 5255 5485 -636 2279 87 0 0 chrX 47021802 47022100 -115577830 - AluSg SINE Alu -12 298 1 259 299 133 31 chrX 47022100 47022323 -115577607 + L1ME4a LINE L1 5485 5791 -330 1974 107 17 7 chrX 47022856 47023156 -115576774 - AluSq SINE Alu -10 303 1 803 193 16 21 chrX 47023265 47023457 -115576473 - L1MC4 LINE L1 0 8042 7852 1814 164 0 0 chrX 47023468 47023761 -115576169 - AluJb SINE Alu -19 293 1 234 293 40 20 chrX 47024130 47024229 -115575701 + L1ME4a LINE L1 5969 6069 -52 433 291 76 67 chrX 47025530 47025687 -115574243 - MIR SINE MIR -31 231 70 2074 141 0 0 chrX 47025687 47025999 -115573931 - AluSx SINE Alu 0 312 1 433 291 76 67 chrX 47025999 47026051 -115573879 - MIR SINE MIR -192 70 20 315 298 93 58 chrX 47026723 47026885 -115573045 + L2 LINE L2 2372 2548 -766 2225 84 27 10 chrX 47026885 47027184 -115572746 - AluSq SINE Alu -9 304 1 315 298 93 58 chrX 47027184 47027279 -115572651 + L2 LINE L2 2548 2638 -676 1399 209 107 59 chrX 47027321 47028018 -115571912 - L1MC5 LINE L1 -36 7925 7262 345 136 106 0 chrX 47028023 47028089 -115571841 + L1MC5 LINE L1 7269 7341 -620 355 91 0 0 chrX 47028218 47028262 -115571668 + Alu SINE Alu 1 44 -258 2185 97 10 0 chrX 47028311 47028600 -115571330 + AluSq SINE Alu 1 292 -21 2227 84 6 6 chrX 47028639 47028950 -115570980 - AluY SINE Alu 0 311 1 349 149 90 15 chrX 47028953 47029020 -115570910 + L1MC5 LINE L1 7647 7718 -243 1055 142 9 75 chrX 47029021 47029233 -115570697 + MER20 DNA MER1_type 2 199 -20 23 0 0 0 chrX 47029248 47029271 -115570659 + AT_rich Low_complexity Low_complexity 1 23 0 1133 198 169 0 chrX 47029274 47029522 -115570408 + AluSg SINE Alu 1 290 -10 821 152 0 36 chrX 47029584 47029722 -115570208 - FLAM_C SINE Alu 0 133 1 2010 125 0 7 chrX 47029724 47030027 -115569903 - AluSx SINE Alu -11 301 1 2158 82 62 0 chrX 47030055 47030347 -115569583 - AluY SINE Alu -1 310 1 263 203 17 0 chrX 47030349 47030408 -115569522 - L1MC4 LINE L1 -1031 7011 6952 847 208 66 129 chrX 47030431 47030555 -115569375 - L1MC5 LINE L1 -35 7926 7796 2030 111 0 7 chrX 47030555 47030852 -115569078 - AluSg SINE Alu -15 295 1 847 208 66 129 chrX 47030852 47030914 -115569016 - L1MC5 LINE L1 -165 7796 7732 2242 88 16 0 chrX 47030914 47031219 -115568711 + AluY SINE Alu 1 310 -1 847 208 66 129 chrX 47031219 47031319 -115568611 - L1MC5 LINE L1 -229 7732 7627 2040 104 7 3 chrX 47031319 47031608 -115568322 - AluSg SINE Alu -19 291 2 847 208 66 129 chrX 47031608 47031910 -115568020 - L1MC5 LINE L1 -334 7627 7373 261 170 0 0 chrX 47031948 47031995 -115567935 - L1MC5 LINE L1 -584 7377 7331 1945 166 23 8 chrX 47031996 47032038 -115567892 - Charlie5 DNA MER1_type 0 2624 2584 2375 56 7 7 chrX 47032038 47032342 -115567588 - AluY SINE Alu -7 304 1 1945 166 23 8 chrX 47032342 47032684 -115567246 - Charlie5 DNA MER1_type -40 2584 2234 677 163 8 0 chrX 47032685 47032808 -115567122 - Charlie5 DNA MER1_type -2488 124 1 2228 218 38 69 chrX 47032809 47033598 -115566332 - L1MC5 LINE L1 -631 7330 6563 2234 80 0 0 chrX 47033764 47034051 -115565879 + AluY SINE Alu 1 287 -24 705 260 64 69 chrX 47034303 47035231 -115564699 - L1MC4 LINE L1 -1 8041 7111 291 258 75 66 chrX 47035204 47035484 -115564446 - L1MC4a LINE L1 -1630 6178 5865 * 2376 50 0 25 chrX 47035484 47035802 -115564128 + AluY SINE Alu 1 310 -1 291 258 75 66 chrX 47035802 47035844 -115564086 - L1MC4a LINE L1 -1943 5865 5825 292 357 86 0 chrX 47035851 47035991 -115563939 + L2 LINE L2 2696 2847 -467 24 0 0 0 chrX 47036050 47036074 -115563856 + AT_rich Low_complexity Low_complexity 1 24 0 1573 187 10 0 chrX 47036104 47036393 -115563537 - AluJo SINE Alu -20 292 1 1934 154 0 0 chrX 47036495 47036794 -115563136 + AluJb SINE Alu 1 299 -13 325 267 144 34 chrX 47037148 47037294 -115562636 + L2 LINE L2 3147 3308 -5 428 285 70 47 chrX 47038023 47038237 -115561693 - MIR SINE MIR -24 238 20 759 247 55 90 chrX 47039279 47039642 -115560288 - L2 LINE L2 -19 3253 2906 269 196 0 0 chrX 47041280 47041331 -115558599 + MER4-int LTR ERV1 1111 1161 -5437 397 348 191 12 chrX 47041502 47041758 -115558172 - L2 LINE L2 0 3272 2971 * 868 170 7 13 chrX 47041755 47041908 -115558022 + MIR SINE MIR 22 173 -89 564 272 76 34 chrX 47042500 47042928 -115557002 - L1MC4a LINE L1 -128 5993 5549 513 233 204 0 chrX 47043169 47043345 -115556585 + MIR SINE MIR 22 233 -29 319 266 0 0 chrX 47043358 47043422 -115556508 - MIR3 SINE MIR -37 171 108 281 191 0 0 chrX 47043470 47043517 -115556413 + MER5B DNA MER1_type 3 49 -129 208 254 60 15 chrX 47043622 47043689 -115556241 - MER5A DNA MER1_type -24 165 96 322 260 29 19 chrX 47043820 47043924 -115556006 - MIR SINE MIR -84 124 20 678 361 58 27 chrX 47044136 47044549 -115555381 - L2 LINE L2 -20 3252 2827 259 315 56 19 chrX 47044639 47044747 -115555183 - MER5B DNA MER1_type -63 115 4 466 265 38 8 chrX 47044940 47045072 -115554858 + L2 LINE L2 3137 3272 0 338 238 246 0 chrX 47045613 47045735 -115554195 - MIR3 SINE MIR -15 193 42 188 196 0 20 chrX 47047068 47047119 -115552811 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 221 296 12 0 chrX 47047145 47047226 -115552704 + (TTCA)n Simple_repeat Simple_repeat 3 84 0 506 343 54 43 chrX 47047231 47047601 -115552329 - L2 LINE L2 0 3272 2899 330 311 59 0 chrX 47047657 47047776 -115552154 - L2 LINE L2 -535 2779 2654 1544 94 0 19 chrX 47047805 47047941 -115551989 + AluSx SINE Alu 1 133 -179 2185 100 0 0 chrX 47047941 47048241 -115551689 + AluSq SINE Alu 1 300 -13 1544 94 0 19 chrX 47048241 47048317 -115551613 + AluSx SINE Alu 133 209 -103 333 109 0 0 chrX 47048317 47048372 -115551558 + Alu SINE Alu 245 299 -1 2213 100 3 0 chrX 47048395 47048696 -115551234 + AluSx SINE Alu 2 303 -9 285 313 85 59 chrX 47048711 47048983 -115550947 - L2 LINE L2 -153 3119 2841 364 248 106 93 chrX 47049111 47049357 -115550573 - HAL1 LINE L1 -14 2493 2245 372 285 112 42 chrX 47049411 47049625 -115550305 - HAL1b LINE L1 -405 943 715 1049 252 140 49 chrX 47049658 47050112 -115549818 - HAL1 LINE L1 -365 2142 1610 1628 79 0 0 chrX 47050112 47050326 -115549604 - AluY SINE Alu -16 295 82 1049 252 140 49 chrX 47050326 47050521 -115549409 - HAL1 LINE L1 -897 1610 1434 * 3301 201 66 12 chrX 47050497 47051550 -115548380 - L1MDa LINE L1 -4982 1558 31 2300 68 0 7 chrX 47051559 47051890 -115548040 - AluSq SINE Alu 0 313 1 1766 263 61 83 chrX 47051912 47053174 -115546756 - HAL1 LINE L1 -1080 1821 395 461 186 0 143 chrX 47053181 47053249 -115546681 - HAL1 LINE L1 -123 2384 2345 2389 87 0 0 chrX 47053249 47053561 -115546369 - AluSx SINE Alu 0 312 1 461 186 0 143 chrX 47053561 47053632 -115546298 - HAL1 LINE L1 -162 2345 2265 234 157 59 0 chrX 47053765 47053816 -115546114 - HAL1b LINE L1 -549 799 746 1136 205 184 21 chrX 47053867 47054248 -115545682 - HAL1 LINE L1 -355 2152 1710 1089 279 97 36 chrX 47054275 47054751 -115545179 + MLT1K LTR MaLR 81 585 -3 987 290 68 54 chrX 47055094 47055918 -115544012 + L1ME3A LINE L1 5256 5940 -230 233 186 169 17 chrX 47056215 47056274 -115543656 + LTR67 LTR ERVL 432 499 -58 1750 118 0 4 chrX 47056275 47056521 -115543409 + AluSp SINE Alu 1 245 -68 2085 95 0 3 chrX 47056521 47056803 -115543127 - AluSc SINE Alu -26 283 1 1686 230 123 33 chrX 47056811 47057480 -115542450 - HAL1 LINE L1 -786 1721 993 201 250 42 0 chrX 47058278 47058326 -115541604 - L2 LINE L2 -1 3312 3263 * 412 299 65 19 chrX 47058310 47058464 -115541466 - MIR SINE MIR -93 169 9 23 0 0 0 chrX 47058682 47058705 -115541225 + AT_rich Low_complexity Low_complexity 1 23 0 2133 120 0 0 chrX 47058705 47059005 -115540925 - AluSx SINE Alu -12 300 1 352 274 33 46 chrX 47059009 47059162 -115540768 - HAL1 LINE L1 0 2507 2357 771 281 70 65 chrX 47059170 47059573 -115540357 + MLT1L LTR MaLR 89 598 -17 438 238 164 71 chrX 47059590 47059623 -115540307 - HAL1 LINE L1 -160 2347 2318 2108 120 0 0 chrX 47059623 47059924 -115540006 - AluSx SINE Alu -11 301 1 438 238 164 71 chrX 47059924 47060268 -115539662 - HAL1 LINE L1 -189 2318 1935 2435 40 0 7 chrX 47060276 47060577 -115539353 - AluY SINE Alu -12 299 1 2144 98 0 7 chrX 47060579 47060875 -115539055 - AluSx SINE Alu -18 294 1 835 139 0 29 chrX 47060912 47061049 -115538881 + AluJb SINE Alu 1 133 -179 439 286 135 70 chrX 47061303 47061659 -115538271 - HAL1 LINE L1 -2127 380 2 351 280 40 124 chrX 47061739 47061789 -115538141 + MIR SINE MIR 20 73 -189 2421 62 0 10 chrX 47061789 47062095 -115537835 - AluSq SINE Alu -10 303 1 351 280 40 124 chrX 47062095 47062294 -115537636 + MIR SINE MIR 73 248 -14 1230 87 6 0 chrX 47062308 47062480 -115537450 - AluSg/x SINE Alu -11 299 127 372 306 18 0 chrX 47062905 47063016 -115536914 - MIR3 SINE MIR -34 174 62 248 260 23 141 chrX 47063040 47063217 -115536713 - MIR3 SINE MIR -4 204 49 282 238 60 24 chrX 47063601 47063685 -115536245 - MIR3 SINE MIR -45 163 77 430 297 131 57 chrX 47063852 47064602 -115535328 + L2 LINE L2 2459 3268 -4 457 200 10 40 chrX 47064848 47064948 -115534982 - MIR SINE MIR -91 171 75 189 0 0 0 chrX 47065193 47065214 -115534716 + (A)n Simple_repeat Simple_repeat 1 21 0 1660 172 0 10 chrX 47065214 47065505 -115534425 + AluJb SINE Alu 1 288 -24 233 211 105 0 chrX 47065742 47065799 -115534131 - L1ME4a LINE L1 -96 6025 5963 271 224 207 0 chrX 47065817 47065933 -115533997 - L1ME4a LINE L1 -201 5920 5781 815 108 0 8 chrX 47066344 47066474 -115533456 - L1MB8 LINE L1 -1 6177 6049 2105 134 50 22 chrX 47066485 47066843 -115533087 - THE1C LTR MaLR -7 368 1 1131 172 22 22 chrX 47066843 47067075 -115532855 - L1MB7 LINE L1 -140 6044 5813 1654 161 68 0 chrX 47067096 47067388 -115532542 - AluJb SINE Alu 0 312 1 5837 122 58 36 chrX 47067389 47067537 -115532393 - L1MC2 LINE L1 -15 6329 6186 2150 96 0 0 chrX 47067537 47067869 -115532061 - AluSg SINE Alu 0 332 1 5837 122 58 36 chrX 47067869 47068024 -115531906 - L1MC2 LINE L1 -158 6186 6036 1759 98 117 4 chrX 47068024 47068289 -115531641 + AluSg1 SINE Alu 1 295 -14 5837 122 58 36 chrX 47068289 47069021 -115530909 - L1MC2 LINE L1 -308 6036 5269 2158 96 0 3 chrX 47069034 47069325 -115530605 + AluSg SINE Alu 1 290 -20 785 181 0 8 chrX 47069327 47069460 -115530470 - AluJo SINE Alu -178 134 3 967 200 9 5 chrX 47069462 47069677 -115530253 - L1MC2 LINE L1 -849 5297 5082 1227 175 5 5 chrX 47069677 47069900 -115530030 + AluSg/x SINE Alu 85 307 -5 3213 221 19 60 chrX 47069901 47070349 -115529581 - L1 LINE L1 -1059 5087 4622 2238 97 0 0 chrX 47070349 47070647 -115529283 + AluSg SINE Alu 1 298 -12 3213 221 19 60 chrX 47070647 47070973 -115528957 - L1 LINE L1 -1524 4622 4335 838 107 16 0 chrX 47070973 47071095 -115528835 + FLAM_C SINE Alu 18 141 -2 3213 221 19 60 chrX 47071095 47071404 -115528526 - L1 LINE L1 -1811 4335 4015 2286 96 3 3 chrX 47071412 47071725 -115528205 - AluSq SINE Alu 0 313 1 1591 162 37 0 chrX 47071725 47071995 -115527935 - AluJb SINE Alu -5 307 27 1703 120 101 0 chrX 47071995 47072269 -115527661 - AluSx SINE Alu -8 304 1 5131 181 48 80 chrX 47072314 47073638 -115526292 - L1MC4 LINE L1 0 8042 6762 399 277 30 10 chrX 47073898 47073999 -115525931 - MIR SINE MIR -4 258 156 2281 77 0 13 chrX 47074051 47074402 -115525528 + AluSg SINE Alu 1 310 0 409 292 187 0 chrX 47074488 47074628 -115525302 + MIR SINE MIR 28 189 -72 1582 132 12 96 chrX 47074693 47075027 -115524903 - AluJo SINE Alu -6 306 1 2324 88 3 0 chrX 47075116 47075423 -115524507 + AluSx SINE Alu 3 310 -2 436 148 14 169 chrX 47075580 47075651 -115524279 + MLT1E LTR MaLR 1 42 -551 2235 82 0 0 chrX 47075651 47075969 -115523961 - AluSq SINE Alu 0 318 1 436 148 14 169 chrX 47075969 47076038 -115523892 + MLT1E LTR MaLR 42 120 -473 469 184 29 10 chrX 47076046 47076149 -115523781 - MLT1E LTR MaLR -433 160 56 2364 47 3 7 chrX 47076157 47076456 -115523474 + AluY SINE Alu 5 302 -9 1644 136 0 121 chrX 47076467 47076821 -115523109 + AluJo SINE Alu 1 302 0 1768 173 92 43 chrX 47076861 47077166 -115522764 + MLT1E LTR MaLR 206 534 -59 2110 106 10 13 chrX 47077166 47077477 -115522453 - AluSq SINE Alu -3 310 1 1768 173 92 43 chrX 47077477 47077541 -115522389 + MLT1E LTR MaLR 534 593 0 1685 164 35 0 chrX 47077582 47077748 -115522182 - AluJo SINE Alu -15 297 115 216 0 0 0 chrX 47077748 47077772 -115522158 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1685 164 35 0 chrX 47077772 47077892 -115522038 - AluJo SINE Alu -197 115 1 2388 74 0 0 chrX 47078018 47078316 -115521614 + AluSg SINE Alu 1 298 -12 2141 101 3 0 chrX 47078387 47078684 -115521246 - AluSx SINE Alu -14 298 1 856 226 0 0 chrX 47078687 47078846 -115521084 - AluJ SINE Alu -7 295 137 456 289 103 40 chrX 47078863 47079319 -115520611 + L1 LINE L1 4498 4982 -1164 689 112 207 9 chrX 47079358 47079474 -115520456 - AluJ SINE Alu -169 143 5 1372 313 35 16 chrX 47080175 47080372 -115519558 + L2 LINE L2 1961 2153 -1161 3207 138 16 30 chrX 47080372 47080720 -115519210 - MER89 LTR ERV1 0 559 221 2271 96 0 0 chrX 47080720 47081021 -115518909 - AluSx SINE Alu -11 301 1 3207 138 16 30 chrX 47081021 47081239 -115518691 - MER89 LTR ERV1 -338 221 1 1372 313 35 16 chrX 47081239 47081606 -115518324 + L2 LINE L2 2153 2536 -778 228 368 0 0 chrX 47082019 47082095 -115517835 + CT-rich Low_complexity Low_complexity 2 77 0 273 169 99 0 chrX 47082462 47082533 -115517397 + L2 LINE L2 2463 2540 -774 2703 183 45 11 chrX 47082580 47083050 -115516880 + MER21B LTR ERV1 2 487 -376 2211 96 0 7 chrX 47083387 47083717 -115516213 + AluSc SINE Alu 2 329 0 1465 194 57 57 chrX 47083809 47084160 -115515770 + MER21B LTR ERV1 513 863 0 395 169 0 72 chrX 47084166 47084249 -115515681 - L1M4 LINE L1 -1372 4774 4698 1226 197 31 67 chrX 47084272 47084496 -115515434 - L1M4 LINE L1 -1538 4608 4377 2248 97 0 3 chrX 47084496 47084796 -115515134 + AluSx SINE Alu 1 299 -13 738 181 8 8 chrX 47084796 47084929 -115515001 + FLAM_C SINE Alu 1 133 0 1226 197 31 67 chrX 47084929 47085093 -115514837 - L1M4 LINE L1 -1767 4379 4233 * 1498 179 5 73 chrX 47085091 47085260 -115514670 - L1M4 LINE L1 -3166 2980 2801 2092 117 3 7 chrX 47085260 47085569 -115514361 - AluSx SINE Alu -2 310 3 1498 179 5 73 chrX 47085569 47085642 -115514288 - L1M4 LINE L1 -3345 2801 2725 1652 168 3 32 chrX 47085642 47085957 -115513973 - AluJo SINE Alu -6 306 1 1498 179 5 73 chrX 47085957 47086109 -115513821 - L1M4 LINE L1 -3421 2725 2612 1109 275 87 53 chrX 47086113 47086845 -115513085 + L2 LINE L2 2530 3278 -35 342 307 8 39 chrX 47086865 47086992 -115512938 - L3 LINE CR1 -111 1466 1344 753 282 34 56 chrX 47086992 47087097 -115512833 + L1M4 LINE L1 3860 3966 -2180 1955 137 34 3 chrX 47087097 47087390 -115512540 + AluJb SINE Alu 1 302 -10 753 282 34 56 chrX 47087390 47087639 -115512291 + L1M4 LINE L1 3966 4206 -1940 2039 114 4 0 chrX 47087656 47087949 -115511981 + AluSq SINE Alu 11 304 0 324 322 0 0 chrX 47087949 47088039 -115511891 - L3 LINE CR1 -223 1354 1265 244 313 131 0 chrX 47088039 47088138 -115511792 + MIR3 SINE MIR 97 208 0 191 160 368 56 chrX 47088122 47088224 -115511706 - L3 LINE CR1 -336 1241 1172 * 186 43 0 0 chrX 47088224 47088247 -115511683 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 191 160 368 56 chrX 47088247 47088269 -115511661 - L3 LINE CR1 -405 1172 1078 391 269 72 109 chrX 47089421 47089614 -115510316 + MIR3 SINE MIR 1 186 -22 321 230 81 11 chrX 47089706 47089793 -115510137 + MER81 DNA DNA 20 112 -2 351 150 0 0 chrX 47089815 47089875 -115510055 + (TTA)n Simple_repeat Simple_repeat 1 60 0 2473 69 7 3 chrX 47089973 47090276 -115509654 - AluSx SINE Alu -8 304 1 2324 96 7 0 chrX 47090650 47090952 -115508978 + AluSp SINE Alu 1 304 -9 649 257 64 98 chrX 47091034 47091423 -115508507 - L2 LINE L2 0 3272 2897 329 234 140 19 chrX 47091420 47091527 -115508403 + L2 LINE L2 3194 3313 0 * 1314 174 15 0 chrX 47091706 47091907 -115508023 - AluJo SINE Alu -108 204 1 279 306 16 58 chrX 47091908 47092029 -115507901 - L3 LINE CR1 -39 1538 1423 508 232 0 0 chrX 47092050 47092149 -115507781 + MIR3 SINE MIR 95 193 -15 1017 272 118 37 chrX 47092443 47092468 -115507462 - L3 LINE CR1 -17 1560 1538 2008 152 10 7 chrX 47092468 47092770 -115507160 - AluJb SINE Alu -9 303 1 1017 272 118 37 chrX 47092770 47093126 -115506804 - L3 LINE CR1 -39 1538 1148 311 148 182 34 chrX 47093797 47093885 -115506045 + MIR3 SINE MIR 93 193 -15 2003 119 49 0 chrX 47093913 47094199 -115505731 - AluSx SINE Alu -12 300 1 237 324 27 0 chrX 47094648 47094722 -115505208 + L2 LINE L2 2716 2791 -523 198 301 44 53 chrX 47095036 47095149 -115504781 + L2 LINE L2 3146 3257 -56 1641 222 57 16 chrX 47095188 47095630 -115504300 - MLT1C LTR MaLR 0 467 8 475 266 65 35 chrX 47095634 47095803 -115504127 + L2 LINE L2 3136 3309 -4 201 194 0 0 chrX 47095953 47095989 -115503941 - MIR SINE MIR -10 252 217 1049 173 11 6 chrX 47096046 47096225 -115503705 + MIR SINE MIR 81 260 -2 4318 131 9 48 chrX 47096266 47096416 -115503514 - L1MB7 LINE L1 0 6184 6030 891 72 0 0 chrX 47096416 47096527 -115503403 - HY1 scRNA scRNA -1 111 1 4318 131 9 48 chrX 47096527 47097152 -115502778 - L1MB7 LINE L1 -154 6030 5439 462 18 0 0 chrX 47097152 47097207 -115502723 + (TG)n Simple_repeat Simple_repeat 2 56 0 1116 141 41 0 chrX 47098191 47098450 -115501480 - L1MB7 LINE L1 -711 5463 5196 247 258 39 90 chrX 47098739 47098753 -115501177 - L2 LINE L2 -181 3091 3078 189 0 0 0 chrX 47098753 47098774 -115501156 + (GA)n Simple_repeat Simple_repeat 1 21 0 247 258 39 90 chrX 47098774 47098914 -115501016 - L2 LINE L2 -194 3078 2945 267 167 0 83 chrX 47099585 47099681 -115500249 + G-rich Low_complexity Low_complexity 6 93 0 23 33 0 0 chrX 47099981 47100011 -115499919 + GC_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chrX 47100486 47100523 -115499407 + GC_rich Low_complexity Low_complexity 1 37 0 629 256 16 31 chrX 47101598 47101789 -115498141 + MIR3 SINE MIR 20 207 -1 408 304 92 56 chrX 47102248 47102607 -115497323 + L3 LINE CR1 1203 1574 -3 550 251 20 29 chrX 47102848 47103027 -115496903 - MIR SINE MIR -64 198 20 282 284 95 35 chrX 47103517 47103633 -115496297 - MIR SINE MIR -74 188 66 898 182 122 66 chrX 47104261 47104547 -115495383 - AluJo SINE Alu 0 302 1 1173 203 0 64 chrX 47105372 47105638 -115494292 - MIR SINE MIR 0 262 14 366 268 157 33 chrX 47105654 47105696 -115494234 - MIR SINE MIR -66 196 161 2224 108 20 0 chrX 47105696 47105991 -115493939 - AluSq SINE Alu -12 301 1 366 268 157 33 chrX 47105991 47106101 -115493829 - MIR SINE MIR -101 161 25 261 257 27 14 chrX 47106707 47106781 -115493149 - L2 LINE L2 0 3272 3198 207 250 125 0 chrX 47106800 47106856 -115493074 + L2 LINE L2 3251 3313 0 757 210 0 7 chrX 47106966 47107104 -115492826 + FRAM SINE Alu 24 160 -16 220 313 15 0 chrX 47107191 47107258 -115492672 - MIR3 SINE MIR 0 208 141 285 221 22 0 chrX 47107734 47107811 -115492119 + MIR SINE MIR 82 132 -76 269 305 126 11 chrX 47108416 47108511 -115491419 + MIR SINE MIR 157 262 0 581 226 43 154 chrX 47108624 47108974 -115490956 - L2 LINE L2 -37 3235 2925 2286 121 0 9 chrX 47109151 47109466 -115490464 - AluSx SINE Alu 0 312 1 238 323 165 8 chrX 47109528 47109655 -115490275 - L2 LINE L2 -606 2708 2562 440 275 22 14 chrX 47109758 47109896 -115490034 - MIR3 SINE MIR -4 204 66 2569 71 3 6 chrX 47109947 47110278 -115489652 - AluSx SINE Alu 0 332 3 392 306 67 15 chrX 47110548 47110682 -115489248 + MIR SINE MIR 21 161 -101 1886 161 19 19 chrX 47110700 47111011 -115488919 - AluJo SINE Alu 0 312 2 526 216 98 52 chrX 47111717 47111996 -115487934 - HAL1 LINE L1 -10 2497 2203 1929 166 0 19 chrX 47111996 47112304 -115487626 - AluJo SINE Alu -10 302 1 331 244 46 71 chrX 47112371 47112568 -115487362 - HAL1b LINE L1 -411 937 746 312 239 9 55 chrX 47112621 47112730 -115487200 - HAL1 LINE L1 -354 2153 2050 273 206 16 127 chrX 47112739 47112865 -115487065 - L1ME3A LINE L1 -5 6165 6054 2074 109 81 0 chrX 47112929 47113214 -115486716 - AluSx SINE Alu -4 308 1 1987 124 64 0 chrX 47113214 47113496 -115486434 - AluSx SINE Alu -12 300 1 316 299 0 35 chrX 47113497 47113641 -115486289 - HAL1 LINE L1 -1205 1302 1164 1077 81 0 54 chrX 47113677 47113860 -115486070 + FLAM_C SINE Alu 1 175 0 265 257 76 0 chrX 47114724 47114829 -115485101 + MIR SINE MIR 36 148 -60 604 325 54 6 chrX 47115382 47115548 -115484382 + MIR SINE MIR 12 185 -77 2060 130 14 3 chrX 47115607 47115899 -115484031 + AluJo SINE Alu 1 295 -17 2366 120 0 0 chrX 47115899 47116207 -115483723 + AluSx SINE Alu 1 308 -4 192 158 0 0 chrX 47116589 47116627 -115483303 + (CAT)n Simple_repeat Simple_repeat 3 40 0 2401 70 0 23 chrX 47116969 47117269 -115482661 - AluSg1 SINE Alu -16 293 1 2219 115 3 0 chrX 47117304 47117599 -115482331 - AluSq SINE Alu -17 296 1 1648 203 7 0 chrX 47117902 47118193 -115481737 - AluJo SINE Alu -15 297 5 1408 183 133 0 chrX 47118199 47118462 -115481468 - AluJb SINE Alu -14 298 1 960 139 0 89 chrX 47118508 47118688 -115481242 - FRAM SINE Alu -20 156 1 558 203 37 96 chrX 47118704 47118891 -115481039 - L2 LINE L2 -35 3278 3103 562 239 85 65 chrX 47118968 47119169 -115480761 - MIR SINE MIR -47 215 11 367 264 120 16 chrX 47119177 47119302 -115480628 - MIR SINE MIR -77 185 48 363 369 30 12 chrX 47119532 47119700 -115480230 - MER115 DNA AcHobo -436 257 87 292 266 90 21 chrX 47120022 47120273 -115479657 - L1ME4a LINE L1 -22 6099 5795 622 266 44 92 chrX 47120494 47120810 -115479120 - L2 LINE L2 0 3272 2972 233 349 47 0 chrX 47120810 47120916 -115479014 + HAL1 LINE L1 3 113 -2394 3519 253 62 78 chrX 47120931 47121056 -115478874 + HAL1 LINE L1 239 365 -2142 1531 174 60 25 chrX 47121056 47121173 -115478757 + AluJo SINE Alu 3 114 -198 216 0 0 0 chrX 47121173 47121197 -115478733 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1531 174 60 25 chrX 47121197 47121360 -115478570 + AluJo SINE Alu 114 293 -19 3519 253 62 78 chrX 47121360 47121906 -115478024 + HAL1 LINE L1 365 918 -1589 930 142 0 8 chrX 47121906 47122040 -115477890 + FLAM_C SINE Alu 1 133 0 3519 253 62 78 chrX 47122040 47122970 -115476960 + HAL1 LINE L1 918 1862 -645 2318 107 0 0 chrX 47122970 47123270 -115476660 - AluSx SINE Alu -12 300 1 3519 253 62 78 chrX 47123270 47123491 -115476439 + HAL1 LINE L1 1862 2032 -475 2058 145 17 0 chrX 47123491 47123781 -115476149 + AluJb SINE Alu 1 295 -17 3519 253 62 78 chrX 47123781 47123898 -115476032 + HAL1 LINE L1 2032 2149 -358 1438 155 0 5 chrX 47123899 47124112 -115475818 + AluSg/x SINE Alu 84 295 -17 2264 117 0 3 chrX 47124256 47124556 -115475374 + AluSx SINE Alu 1 299 -13 2453 71 7 0 chrX 47124783 47125078 -115474852 + AluSx SINE Alu 1 297 -15 2573 74 0 0 chrX 47125484 47125794 -115474136 - AluY SINE Alu -1 310 1 2244 106 0 0 chrX 47125994 47126316 -115473614 + AluSx SINE Alu 1 322 0 453 324 45 11 chrX 47126456 47126632 -115473298 - MIR3 SINE MIR -7 201 20 561 263 190 5 chrX 47127085 47127290 -115472640 + MIR SINE MIR 1 243 -19 287 306 93 72 chrX 47127718 47127911 -115472019 - MIR SINE MIR -7 255 59 183 239 0 0 chrX 47128298 47128344 -115471586 + (CA)n Simple_repeat Simple_repeat 2 47 0 275 306 14 0 chrX 47128556 47128628 -115471302 + MIR3 SINE MIR 108 180 -28 489 227 66 58 chrX 47128675 47128861 -115471069 - MIR3 SINE MIR -62 146 3 626 244 14 34 chrX 47128867 47129076 -115470854 + L2 LINE L2 2772 2976 -338 2097 191 105 38 chrX 47129863 47131114 -115468816 - L1MB2 LINE L1 -135 6036 4577 2252 107 3 7 chrX 47133569 47133878 -115466052 + AluSg SINE Alu 1 308 -2 383 114 29 0 chrX 47134628 47134698 -115465232 + Charlie5 DNA MER1_type 2553 2624 0 2431 76 3 3 chrX 47134751 47135054 -115464876 + AluSp SINE Alu 1 303 -10 2025 154 0 7 chrX 47135236 47135534 -115464396 + AluJb SINE Alu 1 296 -16 6778 64 20 0 chrX 47336018 47337116 -115262814 - L1PA7 LINE L1 0 6154 5051 1026 121 15 65 chrX 47337217 47337416 -115262514 - LTR1B LTR ERV1 -637 189 1 306 261 128 71 chrX 47337466 47337677 -115262253 + L1MC3 LINE L1 1064 1286 -5130 403 118 47 24 chrX 47337955 47338040 -115261890 - L1MB4 LINE L1 -3 6177 6091 2299 106 0 6 chrX 47338597 47338908 -115261022 - AluSx SINE Alu -3 309 1 2408 75 0 3 chrX 47339223 47339528 -115260402 + AluY SINE Alu 1 304 -7 982 141 50 15 chrX 47339918 47340117 -115259813 - MLT1B LTR MaLR -1 389 184 241 271 14 29 chrX 47340203 47340273 -115259657 - MER5B DNA MER1_type -32 146 78 21 36 0 0 chrX 47340293 47340321 -115259609 + AT_rich Low_complexity Low_complexity 1 28 0 225 65 0 0 chrX 47340368 47340399 -115259531 + Alu SINE Alu 2 32 -269 299 223 123 15 chrX 47340514 47340644 -115259286 + L1MC3 LINE L1 2132 2275 -4151 1582 268 42 71 chrX 47340683 47341542 -115258388 + L1MC3 LINE L1 4462 5257 -1444 2237 100 0 13 chrX 47341542 47341852 -115258078 + AluSg SINE Alu 1 306 -4 1582 268 42 71 chrX 47341852 47342529 -115257401 + L1MC3 LINE L1 5257 5952 -749 258 191 15 15 chrX 47342531 47342599 -115257331 - MER92B LTR ERV1 0 636 569 257 175 0 35 chrX 47342625 47342682 -115257248 + L1MC3 LINE L1 6280 6335 -290 403 216 36 36 chrX 47342684 47342823 -115257107 + MLT1A2 LTR MaLR 2 140 -234 574 205 72 6 chrX 47342954 47343120 -115256810 + LTR1B LTR ERV1 650 826 0 434 290 95 12 chrX 47343794 47343963 -115255967 + MIR SINE MIR 78 260 -2 534 262 148 5 chrX 47344350 47344563 -115255367 - MER45C DNA AcHobo -8 945 703 1090 260 64 14 chrX 47344567 47344928 -115255002 - MER45C DNA AcHobo -574 379 1 223 143 171 14 chrX 47344929 47344999 -115254931 + MIR SINE MIR 68 148 -114 198 103 0 0 chrX 47345002 47345031 -115254899 + (A)n Simple_repeat Simple_repeat 1 29 0 1137 208 50 36 chrX 47345066 47345616 -115254314 + LTR27 LTR ERV1 1 634 -2 2707 119 39 30 chrX 47345689 47346288 -115253642 + MER4E LTR ERV1 1 779 0 4180 147 53 42 chrX 47346288 47347015 -115252915 + MER4E-int LTR ERV1 1 719 -1067 2211 116 0 0 chrX 47347015 47347307 -115252623 - AluSx SINE Alu -20 292 1 4180 147 53 42 chrX 47347307 47347674 -115252256 + MER4E-int LTR ERV1 719 1360 -426 186 43 0 0 chrX 47347674 47347697 -115252233 + (TG)n Simple_repeat Simple_repeat 2 24 0 4180 147 53 42 chrX 47347697 47347720 -115252210 + MER4E-int LTR ERV1 1360 1381 -405 255 171 24 37 chrX 47347700 47347782 -115252148 + MER4B-int LTR ERV1 580 660 -4355 * 7915 122 61 41 chrX 47347788 47348048 -115251882 + MER4B-int LTR ERV1 1346 1599 -5159 438 19 0 0 chrX 47348048 47348102 -115251828 + L1PA3 LINE L1 6099 6152 -3 7915 122 61 41 chrX 47348102 47348479 -115251451 + MER4B-int LTR ERV1 1599 1967 -4791 1924 156 0 13 chrX 47348479 47348780 -115251150 + AluSx SINE Alu 1 297 -15 7915 122 61 41 chrX 47348780 47348949 -115250981 + MER4B-int LTR ERV1 1967 2131 -4627 2399 81 3 7 chrX 47348949 47349259 -115250671 - AluSg1 SINE Alu 0 309 1 7915 122 61 41 chrX 47349259 47350876 -115249054 + MER4B-int LTR ERV1 2131 3003 -3755 2340 76 3 7 chrX 47350876 47351177 -115248753 + AluSc SINE Alu 10 309 0 7915 122 61 41 chrX 47351177 47351272 -115248658 + MER4B-int LTR ERV1 3003 3095 -3663 4090 116 33 29 chrX 47351258 47351923 -115248007 + MER4B-int LTR ERV1 3421 4088 -2670 * 12011 100 27 4 chrX 47351922 47353726 -115246204 + MER4B-int LTR ERV1 4452 6295 -463 336 219 0 0 chrX 47356956 47357020 -115242910 + MER6B DNA MER2_type 11 74 -202 581 200 0 8 chrX 47357167 47357287 -115242643 + MER6B DNA MER2_type 92 210 0 966 151 6 19 chrX 47357359 47357518 -115242412 - AluJb SINE Alu -19 293 137 414 0 0 0 chrX 47359800 47359846 -115240084 + (TG)n Simple_repeat Simple_repeat 2 47 0 1723 107 9 0 chrX 47360845 47361078 -115238852 - AluSq SINE Alu -14 299 65 230 318 20 81 chrX 47361991 47362139 -115237791 + MIR SINE MIR 92 230 -32 344 246 170 28 chrX 47362398 47362702 -115237228 + MLT1J LTR MaLR 110 526 -89 390 313 38 23 chrX 47362744 47362875 -115237055 - MER5B DNA MER1_type -5 173 41 1222 232 38 51 chrX 47362930 47363137 -115236793 - L1MC5 LINE L1 -106 7855 7647 1883 143 7 7 chrX 47363137 47363424 -115236506 + AluJb SINE Alu 1 287 -25 1222 232 38 51 chrX 47363424 47363746 -115236184 - L1MC5 LINE L1 -314 7647 7333 1249 279 117 50 chrX 47363774 47365335 -115234595 - L1MC5 LINE L1 -733 7228 5545 268 204 140 32 chrX 47365504 47365597 -115234333 + L2 LINE L2 3168 3270 -2 383 316 155 11 chrX 47365711 47365989 -115233941 - L2 LINE L2 0 3313 2996 253 129 0 97 chrX 47366176 47366238 -115233692 - AluSp SINE Alu -116 187 132 538 310 77 38 chrX 47366406 47367128 -115232802 + L1MC/D LINE L1 2393 3223 -2923 394 314 78 33 chrX 47367208 47367514 -115232416 + L1MC/D LINE L1 3256 3575 -2571 723 273 71 66 chrX 47367548 47367898 -115232032 + L1MC/D LINE L1 3586 3933 -2278 213 94 0 0 chrX 47367898 47367930 -115232000 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 723 273 71 66 chrX 47367930 47369446 -115230484 + L1MC/D LINE L1 3933 5463 -748 954 152 6 12 chrX 47371109 47371280 -115228650 + MER2 DNA MER2_type 1 170 -175 265 164 0 55 chrX 47371384 47371439 -115228491 + MER2 DNA MER2_type 294 345 0 927 241 94 67 chrX 47371933 47372845 -115227085 + L1MC5 LINE L1 6889 7825 -136 1580 110 0 47 chrX 47372846 47373082 -115226848 + AluSg SINE Alu 1 225 -85 2224 109 18 39 chrX 47373188 47373520 -115226410 + MER4E-int LTR ERV1 6383 6707 -51 204 40 0 0 chrX 47373520 47373545 -115226385 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2224 109 18 39 chrX 47373545 47373596 -115226334 + MER4E-int LTR ERV1 6707 6758 0 2571 112 55 32 chrX 47373596 47374188 -115225742 + MER4E LTR ERV1 1 779 0 988 277 42 37 chrX 47375117 47375575 -115224355 + LTR40c LTR ERVL 1 460 -5 358 313 0 9 chrX 47375797 47375909 -115224021 + MER90 LTR ERV1 18 128 -486 636 278 12 0 chrX 47375913 47376082 -115223848 + MER90 LTR ERV1 444 614 0 659 366 32 42 chrX 47376088 47376465 -115223465 + L2 LINE L2 2878 3250 -22 254 246 262 16 chrX 47376471 47376593 -115223337 - L2 LINE L2 0 3313 3162 369 323 75 57 chrX 47376596 47376878 -115223052 - L2 LINE L2 -10 3303 3017 688 273 43 51 chrX 47376904 47377160 -115222770 - L2 LINE L2 -500 2814 2561 1573 165 32 29 chrX 47377284 47377563 -115222367 + AluJo SINE Alu 7 286 -26 799 190 0 7 chrX 47377563 47377705 -115222225 + Tigger5 DNA MER2_type 98 238 -2085 * 1240 183 0 4 chrX 47377695 47377935 -115221995 + Tigger5 DNA MER2_type 2085 2323 0 317 81 161 0 chrX 47377935 47377997 -115221933 + MLT2B1 LTR ERVL 449 520 0 365 234 21 11 chrX 47378074 47378168 -115221762 - L2 LINE L2 -744 2570 2476 575 332 21 35 chrX 47378263 47378603 -115221327 + MLT1I LTR MaLR 71 405 -4 259 315 15 69 chrX 47378684 47378814 -115221116 - MIR SINE MIR -129 133 11 251 230 0 81 chrX 47378871 47378945 -115220985 - L2 LINE L2 0 3313 3246 23 0 0 0 chrX 47379026 47379049 -115220881 + AT_rich Low_complexity Low_complexity 1 23 0 1392 241 39 32 chrX 47379109 47379219 -115220711 - L1ME LINE L1 -2339 4067 3959 1867 159 3 3 chrX 47379219 47379525 -115220405 + AluJb SINE Alu 1 306 0 1392 241 39 32 chrX 47379525 47380030 -115219900 - L1ME LINE L1 -2447 3959 3447 312 200 30 10 chrX 47380010 47380110 -115219820 - L1ME LINE L1 -3821 2585 2484 * 464 182 66 12 chrX 47380113 47380374 -115219556 - L1ME LINE L1 -5037 1372 1057 1351 286 55 25 chrX 47380376 47380865 -115219065 - L1ME LINE L1 -5875 534 31 2501 199 30 42 chrX 47380902 47381594 -115218336 - L1MDa LINE L1 -4131 2409 1726 1592 190 60 35 chrX 47381598 47382051 -115217879 - L1MDa LINE L1 -4938 1602 1135 2104 107 0 0 chrX 47382051 47382331 -115217599 - AluSg SINE Alu -17 293 14 2180 254 88 18 chrX 47382341 47383156 -115216774 - L1MDa LINE L1 -5501 1039 34 663 315 31 22 chrX 47383933 47384155 -115215775 + MIR SINE MIR 17 240 -22 2302 95 3 10 chrX 47384364 47384670 -115215260 - AluSp SINE Alu -9 304 1 192 331 150 16 chrX 47385182 47385309 -115214621 + L2 LINE L2 3125 3268 -4 863 152 61 18 chrX 47385517 47385682 -115214248 + MER5B DNA MER1_type 7 178 0 477 267 41 51 chrX 47385865 47386060 -115213870 + Charlie8 DNA MER1_type 26 218 -2199 2182 105 0 10 chrX 47386103 47386399 -115213531 - AluSc SINE Alu -10 299 7 3226 246 58 28 chrX 47386421 47386770 -115213160 - L1MEc LINE L1 -2866 3349 3012 1984 86 61 7 chrX 47386770 47387049 -115212881 - AluSc SINE Alu -15 294 1 3226 246 58 28 chrX 47387049 47387557 -115212373 - L1MEc LINE L1 -3203 3012 2521 2425 81 0 0 chrX 47387557 47387855 -115212075 - AluSq SINE Alu -15 298 1 3226 246 58 28 chrX 47387855 47388222 -115211708 - L1MEc LINE L1 -3694 2521 2166 2168 107 10 3 chrX 47388222 47388530 -115211400 - AluSp SINE Alu -3 310 1 3226 246 58 28 chrX 47388530 47388953 -115210977 - L1MEc LINE L1 -4049 2166 1757 2324 94 13 0 chrX 47388953 47389261 -115210669 + AluSx SINE Alu 1 312 0 3226 246 58 28 chrX 47389261 47390656 -115209274 - L1MEc LINE L1 -4458 1757 39 429 215 104 15 chrX 47390666 47390801 -115209129 - L1ME3 LINE L1 0 6162 6016 240 287 0 21 chrX 47391298 47391392 -115208538 - L1M4c LINE L1 -4437 2701 2610 2060 279 54 22 chrX 47391546 47391873 -115208057 - L1M4c LINE L1 -4436 2702 2387 1783 159 0 36 chrX 47391873 47392182 -115207748 - AluJo SINE Alu -7 305 8 2060 279 54 22 chrX 47392182 47393010 -115206920 - L1M4c LINE L1 -4751 2387 1379 5677 208 21 9 chrX 47393020 47394134 -115205796 - L1M4c LINE L1 -5721 1138 11 698 233 64 58 chrX 47394490 47394576 -115205354 + L1MEc LINE L1 2334 2418 -3797 1706 151 7 21 chrX 47394576 47394893 -115205037 + AluJo SINE Alu 1 313 0 698 233 64 58 chrX 47394893 47395051 -115204879 + L1MEc LINE L1 2418 2549 -3666 6626 114 19 11 chrX 47395051 47395234 -115204696 - HSMAR2 DNA Mariner 0 1302 1122 207 0 0 0 chrX 47395234 47395257 -115204673 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6626 114 19 11 chrX 47395257 47396021 -115203909 - HSMAR2 DNA Mariner -180 1122 344 1758 162 0 59 chrX 47396021 47396342 -115203588 - AluJb SINE Alu -10 302 1 6626 114 19 11 chrX 47396342 47396389 -115203541 - HSMAR2 DNA Mariner -958 344 299 519 60 0 0 chrX 47396400 47396467 -115203463 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 866 148 0 0 chrX 47396473 47396601 -115203329 - AluSg/x SINE Alu -36 274 147 709 156 0 0 chrX 47396602 47396711 -115203219 + AluSq/x SINE Alu 25 133 -180 1829 101 61 3 chrX 47396715 47397012 -115202918 - HSMAR2 DNA Mariner -987 315 2 1625 190 32 88 chrX 47397012 47397445 -115202485 + L1MEc LINE L1 2547 2944 -3271 2038 138 3 7 chrX 47397445 47397735 -115202195 + AluJo SINE Alu 10 298 -14 1625 190 32 88 chrX 47397735 47397858 -115202072 + L1MEc LINE L1 2944 3072 -3143 203 260 20 0 chrX 47397956 47398006 -115201924 - L2 LINE L2 0 3272 3222 245 304 14 0 chrX 47398055 47398124 -115201806 + L2 LINE L2 3202 3271 -1 730 263 43 109 chrX 47400297 47400673 -115199257 - L2 LINE L2 0 3313 2963 235 293 47 28 chrX 47401088 47401194 -115198736 - MIR SINE MIR -76 186 79 23 54 0 0 chrX 47401259 47401296 -115198634 + AT_rich Low_complexity Low_complexity 1 37 0 285 225 75 33 chrX 47401427 47401547 -115198383 - L1MC4 LINE L1 -4 8038 7914 462 101 0 0 chrX 47401562 47401631 -115198299 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 2117 243 103 36 chrX 47401684 47401751 -115198179 - L1ME3A LINE L1 -17 6153 6092 2402 81 3 0 chrX 47401751 47402060 -115197870 - AluSg SINE Alu 0 310 1 2117 243 103 36 chrX 47402060 47402579 -115197351 - L1ME3A LINE L1 -78 6092 5609 2336 84 0 3 chrX 47402579 47402875 -115197055 - AluSg SINE Alu -15 295 1 2117 243 103 36 chrX 47402875 47403779 -115196151 - L1ME3A LINE L1 -561 5609 4561 323 271 42 0 chrX 47403779 47403923 -115196007 - L1MC5 LINE L1 -201 7760 7611 311 261 15 46 chrX 47404033 47404163 -115195767 - L1MC4a LINE L1 -833 6975 6850 698 255 74 77 chrX 47404180 47404215 -115195715 - L1MC5 LINE L1 -54 7907 7873 1968 147 0 0 chrX 47404215 47404508 -115195422 + AluJo SINE Alu 1 293 -19 698 255 74 77 chrX 47404508 47404891 -115195039 - L1MC5 LINE L1 -88 7873 7488 2267 59 0 14 chrX 47404891 47405206 -115194724 - AluY SINE Alu 0 311 1 698 255 74 77 chrX 47405206 47405435 -115194495 - L1MC5 LINE L1 -473 7488 7260 1259 222 47 68 chrX 47405536 47406122 -115193808 - L1MC4 LINE L1 -728 7233 6684 323 320 40 32 chrX 47406255 47406380 -115193550 - L2 LINE L2 -2 3270 3145 204 377 49 16 chrX 47407281 47407464 -115192466 - L2 LINE L2 -2919 395 207 312 22 0 44 chrX 47407921 47407993 -115191937 + L1PA3 LINE L1 6105 6174 0 2939 152 22 29 chrX 47408203 47408755 -115191175 - L1MB7 LINE L1 -185 6810 6263 1678 188 42 72 chrX 47408756 47408810 -115191120 + LTR52 LTR ERVL 1 55 -366 2296 100 3 0 chrX 47408810 47409111 -115190819 - AluSp SINE Alu -11 302 1 1678 188 42 72 chrX 47409111 47409488 -115190442 + LTR52 LTR ERVL 55 419 -2 1338 257 167 60 chrX 47409489 47410362 -115189568 + LTR52-int LTR ERVL 3 969 -2587 1439 187 12 4 chrX 47410384 47410635 -115189295 + Tigger3b DNA MER2_type 1 253 -978 1946 118 7 46 chrX 47410637 47410941 -115188989 + AluSx SINE Alu 1 292 -20 306 125 0 0 chrX 47411049 47411097 -115188833 + Alu SINE Alu 254 301 -1 5687 93 42 39 chrX 47411104 47411460 -115188470 + Tigger3b DNA MER2_type 268 621 -2407 2238 95 7 0 chrX 47411460 47411756 -115188174 - AluSp SINE Alu -15 298 1 5687 93 42 39 chrX 47411756 47412046 -115187884 + Tigger3b DNA MER2_type 621 909 -2119 2247 105 0 3 chrX 47412046 47412350 -115187580 - AluSq SINE Alu -10 303 1 5687 93 42 39 chrX 47412350 47412656 -115187274 + Tigger3b DNA MER2_type 909 1224 -7 4546 188 33 7 chrX 47412803 47413660 -115186270 + LTR52-int LTR ERVL 1217 2095 -3590 5089 222 20 30 chrX 47413817 47415056 -115184874 + LTR52-int LTR ERVL 2100 3556 0 1439 209 70 21 chrX 47415059 47415442 -115184488 + LTR52 LTR ERVL 8 409 -12 9039 227 52 73 chrX 47415444 47416551 -115183379 - L1MB7 LINE L1 -730 6261 5132 2581 121 5 27 chrX 47416551 47416989 -115182941 - L1MA6 LINE L1 0 6300 5873 9039 227 52 73 chrX 47416989 47417344 -115182586 - L1MB7 LINE L1 -1859 5132 4771 1997 122 4 0 chrX 47417344 47417623 -115182307 - AluJb SINE Alu -30 282 3 9039 227 52 73 chrX 47417623 47420639 -115179291 - L1MB7 LINE L1 -2220 4771 1925 264 30 0 0 chrX 47420640 47420673 -115179257 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 282 24 0 chrX 47420673 47420758 -115179172 - L1MC4 LINE L1 -1341 6701 6615 310 294 0 22 chrX 47420677 47420769 -115179161 + L1MC4 LINE L1 6614 6703 -1339 * 351 0 0 0 chrX 47420798 47420837 -115179093 + (TG)n Simple_repeat Simple_repeat 2 40 0 402 244 61 9 chrX 47420841 47420956 -115178974 - L1MB7 LINE L1 -5088 1767 1647 1121 222 23 30 chrX 47420960 47421262 -115178668 - LTR55 LTR ERV -2 546 247 932 117 29 18 chrX 47421262 47421433 -115178497 - LTR54 LTR ERV1 0 510 338 1909 243 159 0 chrX 47421433 47421948 -115177982 - L1MB7 LINE L1 -5625 1230 634 447 221 199 33 chrX 47422023 47422204 -115177726 - L1MB7 LINE L1 -6636 223 13 945 210 38 30 chrX 47422214 47422476 -115177454 - L1M4 LINE L1 -1038 5108 4845 3207 169 27 22 chrX 47422480 47423079 -115176851 + L1MC1 LINE L1 5304 5905 -428 821 148 28 0 chrX 47423079 47423221 -115176709 + AluSg/x SINE Alu 161 306 -4 2606 148 5 9 chrX 47423221 47423659 -115176271 + L1MC1 LINE L1 5893 6328 -5 854 277 15 7 chrX 47423749 47424023 -115175907 - L1M4 LINE L1 -1286 4860 4585 711 268 88 19 chrX 47424041 47424452 -115175478 - L1MCa LINE L1 -4271 2474 2036 446 220 34 32 chrX 47424506 47424667 -115175263 - L1MCa LINE L1 -5901 320 6 836 223 42 24 chrX 47424670 47424957 -115174973 - MER33 DNA MER1_type -31 293 2 221 333 76 28 chrX 47424963 47425212 -115174718 - L2 LINE L2 -1134 2180 1920 261 163 0 0 chrX 47425240 47425289 -115174641 + (TG)n Simple_repeat Simple_repeat 1 49 0 302 262 75 16 chrX 47425300 47425487 -115174443 + L1ME3A LINE L1 4860 5057 -1089 816 295 109 48 chrX 47425524 47426185 -115173745 + L1ME3A LINE L1 5262 5962 -208 2214 87 11 0 chrX 47426790 47427092 -115172838 - AluSc SINE Alu 0 305 1 2338 91 0 26 chrX 47428056 47428363 -115171567 - AluSq SINE Alu -14 299 1 306 214 48 87 chrX 47429260 47429386 -115170544 - L1ME3 LINE L1 -81 6081 5961 1640 235 37 82 chrX 47429470 47430278 -115169652 - L1MC5 LINE L1 -430 7531 6760 711 319 39 0 chrX 47430474 47430703 -115169227 - MIR SINE MIR -2 260 23 243 0 0 0 chrX 47431676 47431703 -115168227 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 222 333 18 35 chrX 47431804 47431918 -115168012 + MIR SINE MIR 23 134 -128 2421 116 19 16 chrX 47432180 47432543 -115167387 - THE1B LTR MaLR 0 364 1 598 219 18 7 chrX 47432547 47432691 -115167239 + MLT1A1 LTR MaLR 248 365 0 829 104 55 77 chrX 47433569 47433597 -115166333 + L1MA8 LINE L1 6112 6139 -152 2318 100 3 0 chrX 47433597 47433898 -115166032 + AluSx SINE Alu 1 302 -10 829 104 55 77 chrX 47433898 47434052 -115165878 + L1MA8 LINE L1 6139 6290 -1 1432 264 60 50 chrX 47434074 47434954 -115164976 + L1MC5 LINE L1 6989 7877 -84 292 344 80 16 chrX 47435006 47435131 -115164799 + MER5B DNA MER1_type 46 178 0 295 256 192 64 chrX 47435190 47435604 -115164326 - MLT1J LTR MaLR -126 489 14 214 343 60 30 chrX 47435696 47435830 -115164100 - MIR SINE MIR -17 245 108 1014 100 47 79 chrX 47436332 47436522 -115163408 - MSTB2 LTR MaLR 0 457 274 2163 128 0 3 chrX 47436981 47437293 -115162637 - AluSx SINE Alu -1 311 1 1929 193 141 75 chrX 47437740 47438508 -115161422 - LTR1B LTR ERV1 -8 818 1 261 311 22 11 chrX 47438535 47438625 -115161305 + L1MDb LINE L1 180 270 -6139 2117 259 38 39 chrX 47438876 47439617 -115160313 + L1MDb LINE L1 681 1420 -4989 1198 225 37 90 chrX 47439673 47440130 -115159800 + L1MC/D LINE L1 1 433 -5612 3526 124 32 0 chrX 47440140 47440547 -115159383 + MER41A LTR ERV1 7 436 -118 1984 122 36 16 chrX 47440547 47440850 -115159080 - AluSq SINE Alu -2 311 3 3526 124 32 0 chrX 47440850 47440973 -115158957 + MER41A LTR ERV1 436 554 0 302 252 54 54 chrX 47440975 47441122 -115158808 + L1MC/D LINE L1 436 582 -5463 2172 130 0 16 chrX 47441122 47441438 -115158492 + AluJb SINE Alu 1 311 -1 839 256 54 19 chrX 47441449 47441765 -115158165 + L1MC/D LINE L1 552 878 -5167 1003 168 23 113 chrX 47441839 47441894 -115158036 + L1MC/D LINE L1 2344 2402 -4162 1416 113 24 5 chrX 47441894 47442107 -115157823 + L1MA3 LINE L1 6084 6300 -5 1003 168 23 113 chrX 47442107 47442360 -115157570 + L1MC/D LINE L1 2402 2624 -3940 2246 73 3 27 chrX 47442372 47442672 -115157258 - AluSg SINE Alu -17 293 1 2126 96 44 10 chrX 47443131 47443424 -115156506 + AluSg1 SINE Alu 1 303 -6 790 275 104 78 chrX 47443732 47444023 -115155907 + L1MC/D LINE L1 3333 3615 -2949 1720 168 9 35 chrX 47444023 47444338 -115155592 + AluSx SINE Alu 1 307 -5 790 275 104 78 chrX 47444338 47444881 -115155049 + L1MC/D LINE L1 3615 4200 -2364 2480 150 41 7 chrX 47444881 47445294 -115154636 + MSTA LTR MaLR 1 427 -1 790 275 104 78 chrX 47445294 47445472 -115154458 + L1MC/D LINE L1 4200 4372 -2192 1258 244 96 15 chrX 47445785 47446182 -115153748 - MLT1J1 LTR MaLR -12 434 6 1068 303 35 26 chrX 47446197 47446659 -115153271 + L1MC/D LINE L1 5760 6225 -2001 468 280 97 19 chrX 47446688 47446895 -115153035 + MIR SINE MIR 31 253 -9 2412 87 10 0 chrX 47446933 47447243 -115152687 - AluSp SINE Alu 0 313 1 203 152 0 0 chrX 47447529 47447562 -115152368 + A-rich Low_complexity Low_complexity 3 35 0 510 296 7 0 chrX 47447689 47447831 -115152099 - MER45C DNA AcHobo -108 845 703 1148 258 69 17 chrX 47447835 47448195 -115151735 - MER45C DNA AcHobo -574 379 1 414 257 115 20 chrX 47448195 47448343 -115151587 + MIR SINE MIR 67 228 -34 302 136 0 0 chrX 47448376 47448420 -115151510 + MER4B LTR ERV1 1 44 -566 1461 291 58 60 chrX 47448428 47449361 -115150569 + L1M4 LINE L1 183 1113 -5429 614 327 68 56 chrX 47449384 47450152 -115149778 - L2 LINE L2 -1309 2005 1229 373 228 56 99 chrX 47451050 47451212 -115148718 - MIR SINE MIR -78 184 30 183 276 124 38 chrX 47451397 47451502 -115148428 - MIR SINE MIR -36 226 113 3730 218 85 43 chrX 47451695 47452926 -115147004 - L1MB8 LINE L1 -11 6167 4889 2485 166 14 47 chrX 47452926 47453439 -115146491 - L1MA8 LINE L1 0 6291 5796 236 352 50 11 chrX 47453491 47453670 -115146260 - L1MEc LINE L1 -6166 230 45 276 191 0 0 chrX 47454538 47454593 -115145337 - MIR SINE MIR -65 143 94 209 385 28 7 chrX 47455499 47455642 -115144288 + MIR SINE MIR 67 212 -50 1719 144 14 17 chrX 47455712 47456004 -115143926 + AluJb SINE Alu 17 307 -5 202 271 0 0 chrX 47456386 47456434 -115143496 + L2 LINE L2 3224 3271 -1 1368 276 116 87 chrX 47456859 47457435 -115142495 + MLT1G LTR MaLR 1 588 -2 319 303 49 33 chrX 47457726 47457848 -115142082 - MIR SINE MIR -132 130 7 309 357 42 0 chrX 47460049 47460192 -115139738 - L1MDb LINE L1 -3713 2502 2354 2705 274 60 31 chrX 47460234 47461383 -115138547 - L1MDb LINE L1 -3897 2318 1087 1918 116 74 0 chrX 47461383 47461668 -115138262 - AluSg SINE Alu -4 306 1 2705 274 60 31 chrX 47461668 47462254 -115137676 - L1MDb LINE L1 -5128 1087 519 1064 171 5 42 chrX 47462257 47462474 -115137456 - L1MC3 LINE L1 -172 7613 7405 324 70 0 0 chrX 47462474 47462517 -115137413 + (T)n Simple_repeat Simple_repeat 1 43 0 850 155 7 7 chrX 47462532 47462591 -115137339 - AluJb SINE Alu -130 182 124 495 0 0 0 chrX 47462591 47462646 -115137284 + (TG)n Simple_repeat Simple_repeat 2 56 0 850 155 7 7 chrX 47462646 47462728 -115137202 - AluJb SINE Alu -187 125 41 3049 240 12 31 chrX 47462728 47463561 -115136369 - L1MC3 LINE L1 -369 7416 6600 1377 138 45 16 chrX 47463747 47463993 -115135937 - L1MA3 LINE L1 -160 6145 5893 1846 183 64 21 chrX 47465564 47465953 -115133977 + LTR52 LTR ERVL 3 408 -13 502 263 93 29 chrX 47466044 47466356 -115133574 - L1M4 LINE L1 -840 5306 4975 913 208 21 16 chrX 47466361 47466558 -115133372 - L1M4 LINE L1 -2452 3694 3493 2357 161 3 5 chrX 47466558 47466925 -115133005 - MER47A DNA MER2_type 0 366 1 913 208 21 16 chrX 47466925 47466987 -115132943 - L1M4 LINE L1 -2653 3493 3433 268 254 15 0 chrX 47467165 47467232 -115132698 - L1MDb LINE L1 -6054 342 275 2763 265 118 21 chrX 47467277 47467993 -115131937 - L1MEc LINE L1 -5156 1240 379 2299 70 0 17 chrX 47467993 47468292 -115131638 - AluY SINE Alu -16 295 2 2763 265 118 21 chrX 47468292 47468672 -115131258 - L1MEc LINE L1 -6017 379 37 235 291 33 103 chrX 47468698 47468911 -115131019 - L1M4 LINE L1 -1896 4250 4053 711 266 79 0 chrX 47469049 47469252 -115130678 - MIR SINE MIR -21 241 23 21 0 0 0 chrX 47470470 47470491 -115129439 + AT_rich Low_complexity Low_complexity 1 21 0 2283 183 60 20 chrX 47471323 47471826 -115128104 + Charlie1b DNA MER1_type 1 523 0 8205 28 0 0 chrX 47471856 47473399 -115126531 - L1PA3 LINE L1 -3 6152 4610 1699 166 0 30 chrX 47474118 47474414 -115125516 - AluJb SINE Alu -25 287 1 2303 210 28 28 chrX 47474628 47475133 -115124797 + MLT1D LTR MaLR 1 505 0 965 144 17 204 chrX 47475133 47475535 -115124395 + MLT1D-int LTR MaLR 1 327 -1044 396 164 0 0 chrX 47475604 47475659 -115124271 + MLT1D LTR MaLR 1 55 -450 1406 174 21 90 chrX 47475659 47475993 -115123937 + MLT1D-int LTR MaLR 333 643 -728 1955 210 30 155 chrX 47476052 47476371 -115123559 + MLT1D-int LTR MaLR 632 989 -382 2153 101 0 58 chrX 47476371 47476699 -115123231 + AluSc SINE Alu 1 309 0 1955 210 30 155 chrX 47476699 47477191 -115122739 + MLT1D-int LTR MaLR 989 1337 -34 2016 138 0 0 chrX 47477191 47477495 -115122435 - AluJb SINE Alu 0 304 1 1955 210 30 155 chrX 47477495 47477527 -115122403 + MLT1D-int LTR MaLR 1337 1371 0 2460 175 29 44 chrX 47477532 47477946 -115121984 + MLT1D LTR MaLR 6 501 -94 2773 105 63 19 chrX 47477946 47478356 -115121574 - MSTA LTR MaLR 0 428 1 2460 175 29 44 chrX 47478356 47478449 -115121481 + MLT1D LTR MaLR 501 594 -1 1699 112 59 40 chrX 47478858 47479194 -115120736 - MER61C LTR ERV1 0 434 1 610 265 131 30 chrX 47479248 47479767 -115120163 - L1ME LINE L1 -417 5733 5156 611 141 0 0 chrX 47479767 47479852 -115120078 - MER77 LTR ERV1 -14 591 507 1111 240 52 93 chrX 47479853 47480241 -115119689 - MER77 LTR ERV1 -233 372 1 207 167 0 0 chrX 47480294 47480336 -115119594 + T-rich Low_complexity Low_complexity 1 42 0 513 276 94 65 chrX 47480359 47480775 -115119155 - L1ME LINE L1 -1031 5098 4671 252 308 91 18 chrX 47480902 47481178 -115118752 - L1ME LINE L1 -1621 4508 4213 1992 112 47 4 chrX 47481362 47481640 -115118290 - AluSx SINE Alu -22 290 1 2333 106 0 3 chrX 47482036 47482348 -115117582 + AluSq SINE Alu 1 311 -2 313 263 88 51 chrX 47482495 47482632 -115117298 + MIR SINE MIR 13 154 -108 2193 209 82 29 chrX 47482805 47483326 -115116604 - MER44D DNA MER2_type -1 604 1 2339 161 88 31 chrX 47483359 47483837 -115116093 - MLT1D LTR MaLR 0 505 1 314 286 58 52 chrX 47484430 47484776 -115115154 - L1ME LINE L1 -5030 1089 742 403 286 9 9 chrX 47485299 47485404 -115114526 - MIR SINE MIR -110 152 48 499 295 78 41 chrX 47485921 47486165 -115113765 + MIR SINE MIR 10 262 0 948 268 113 36 chrX 47486664 47486812 -115113118 - L1ME4a LINE L1 -11 6110 5975 1977 103 25 150 chrX 47486812 47487046 -115112884 - MLT1B LTR MaLR 0 390 237 1579 91 0 0 chrX 47487046 47487245 -115112685 - AluSq SINE Alu -114 199 1 1977 103 25 150 chrX 47487245 47487456 -115112474 - MLT1B LTR MaLR -153 237 1 948 268 113 36 chrX 47487456 47487984 -115111946 - L1ME4a LINE L1 -146 5975 5320 492 304 75 19 chrX 47489491 47489705 -115110225 - MIR SINE MIR 0 262 37 483 295 86 30 chrX 47490459 47490669 -115109261 + MIR SINE MIR 40 259 -3 802 292 0 0 chrX 47490790 47490961 -115108969 - MER91B DNA MER1_type -2 188 18 1411 172 0 49 chrX 47490968 47491276 -115108654 + MLT1D LTR MaLR 3 295 -210 566 141 0 0 chrX 47491276 47491378 -115108552 + AluSg/x SINE Alu 203 304 0 2273 107 3 0 chrX 47491403 47491702 -115108228 + AluSx SINE Alu 1 300 -12 340 332 149 44 chrX 47491705 47492274 -115107656 - L2 LINE L2 -634 2680 2052 23 78 0 0 chrX 47492627 47492678 -115107252 + AT_rich Low_complexity Low_complexity 1 51 0 497 278 126 27 chrX 47492841 47493118 -115106812 - HAL1 LINE L1 -194 2313 1980 1768 117 16 8 chrX 47493118 47493366 -115106564 - AluSx SINE Alu -27 285 36 497 278 126 27 chrX 47493366 47493502 -115106428 - HAL1 LINE L1 -527 1980 1859 381 258 96 22 chrX 47493496 47493674 -115106256 - HAL1 LINE L1 -1042 1465 1275 * 456 260 77 0 chrX 47493674 47493778 -115106152 + L2 LINE L2 3198 3309 -4 6189 159 54 25 chrX 47494240 47494746 -115105184 - L1MA9 LINE L1 -2 6310 5820 219 69 0 0 chrX 47494746 47494775 -115105155 + (TG)n Simple_repeat Simple_repeat 2 30 0 6189 159 54 25 chrX 47494775 47495609 -115104321 - L1MA9 LINE L1 -492 5820 5011 234 0 0 0 chrX 47495609 47495635 -115104295 + (TG)n Simple_repeat Simple_repeat 2 27 0 6189 159 54 25 chrX 47495635 47496607 -115103323 - L1MA9 LINE L1 -1301 5011 3912 569 192 8 32 chrX 47496678 47496803 -115103127 + L2 LINE L2 3192 3313 0 308 337 23 58 chrX 47496870 47497131 -115102799 - HAL1 LINE L1 -1187 1320 1069 2273 124 132 5 chrX 47497149 47497529 -115102401 + MSTA LTR MaLR 1 428 0 3242 71 25 7 chrX 47498700 47499136 -115100794 - MLT2A1 LTR ERVL 0 444 1 243 61 0 0 chrX 47499684 47499717 -115100213 + (TG)n Simple_repeat Simple_repeat 1 33 0 394 187 33 33 chrX 47500831 47500922 -115099008 - THE1C LTR MaLR -2 426 336 857 132 5 100 chrX 47500965 47501007 -115098923 - AluJo/FRAM SINE Alu -6 306 262 1943 142 3 7 chrX 47501007 47501309 -115098621 + AluSx SINE Alu 2 302 -10 857 132 5 100 chrX 47501309 47501456 -115098474 - AluJo/FRAM SINE Alu -50 262 135 575 229 179 21 chrX 47501483 47501763 -115098167 + MER5C DNA MER1_type 1 324 0 489 140 54 21 chrX 47502136 47502229 -115097701 - U6 snRNA snRNA -11 96 1 21 0 0 0 chrX 47502597 47502618 -115097312 + AT_rich Low_complexity Low_complexity 1 21 0 7446 35 0 3 chrX 47502694 47503768 -115096162 - L1PA5 LINE L1 0 6154 5082 754 219 127 17 chrX 47504165 47504456 -115095474 + MER41B LTR ERV1 97 384 -94 27 0 0 0 chrX 47504465 47504492 -115095438 + AT_rich Low_complexity Low_complexity 1 27 0 1603 135 45 22 chrX 47504492 47504803 -115095127 - THE1C LTR MaLR -57 318 1 198 0 0 0 chrX 47504933 47504955 -115094975 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 234 0 0 0 chrX 47504954 47504980 -115094950 + (GA)n Simple_repeat Simple_repeat 1 26 0 294 287 24 84 chrX 47505115 47505282 -115094648 - MLT1J LTR MaLR -131 380 224 351 304 89 68 chrX 47505551 47505887 -115094043 - L2 LINE L2 -37 3276 2934 3060 241 54 42 chrX 47505920 47507001 -115092929 - L1MEc LINE L1 -5236 1160 67 261 0 0 0 chrX 47508180 47508209 -115091721 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4321 167 39 40 chrX 47608865 47609843 -114990087 - L1P LINE L1 -4880 1266 290 7127 46 0 2 chrX 47609975 47610957 -114988973 - L1P LINE L1 -3767 2379 1400 1918 149 55 3 chrX 47611489 47611851 -114988079 + MLT1B LTR MaLR 8 388 -2 1039 47 7 0 chrX 47611999 47612149 -114987781 + L1P2 LINE L1 5311 5461 -694 1272 126 10 5 chrX 47612548 47612747 -114987183 + AluSx SINE Alu 1 200 -112 22 35 0 0 chrX 47612747 47612776 -114987154 + AT_rich Low_complexity Low_complexity 1 29 0 231 190 7 102 chrX 47612939 47613076 -114986854 + C-rich Low_complexity Low_complexity 2 125 0 217 189 0 38 chrX 47613218 47613271 -114986659 + C-rich Low_complexity Low_complexity 3 53 0 429 298 33 56 chrX 47613873 47614075 -114985855 - L1ME3 LINE L1 0 6166 5963 1995 246 33 35 chrX 47614551 47615158 -114984772 - L1MEc LINE L1 -5749 647 42 297 242 30 45 chrX 47615162 47615294 -114984636 + LTR16B LTR ERVL 200 329 -135 214 143 0 36 chrX 47615495 47615551 -114984379 + (CCCCCT)n Simple_repeat Simple_repeat 2 55 0 251 324 0 28 chrX 47615552 47615660 -114984270 + CT-rich Low_complexity Low_complexity 2 106 0 * 344 320 0 33 chrX 47615599 47615804 -114984126 + C-rich Low_complexity Low_complexity 1 198 0 431 261 72 20 chrX 47616385 47616634 -114983296 + L1M4 LINE L1 4612 4873 -1273 1095 101 16 79 chrX 47618945 47619080 -114980850 + AluSx SINE Alu 2 123 -189 1893 136 3 23 chrX 47619080 47619388 -114980542 + AluSx SINE Alu 1 302 -10 1095 101 16 79 chrX 47619388 47619441 -114980489 + AluSx SINE Alu 123 178 -134 203 208 19 19 chrX 47619500 47619553 -114980377 + CT-rich Low_complexity Low_complexity 1 53 0 185 226 12 0 chrX 47619605 47619689 -114980241 + C-rich Low_complexity Low_complexity 3 87 0 1331 279 51 42 chrX 47619791 47620186 -114979744 + L1MEc LINE L1 1000 1390 -5006 2417 70 3 10 chrX 47620186 47620500 -114979430 - AluSp SINE Alu 0 313 2 1331 279 51 42 chrX 47620500 47620915 -114979015 + L1MEc LINE L1 1390 1817 -4579 225 219 0 0 chrX 47622573 47622646 -114977284 + G-rich Low_complexity Low_complexity 1 73 0 1655 21 0 0 chrX 47623900 47624086 -114975844 + L1PA3 LINE L1 5970 6155 0 596 193 67 1 chrX 47624088 47624238 -114975692 - L1MC3 LINE L1 -144 7678 7493 670 276 4 70 chrX 47624246 47624489 -114975441 + L2 LINE L2 3086 3312 -1 194 321 0 0 chrX 47624638 47624691 -114975239 + L2 LINE L2 2417 2469 -845 2215 85 20 0 chrX 47625569 47625875 -114974055 + AluSx SINE Alu 1 312 0 426 163 20 0 chrX 47626186 47626284 -114973646 + MER113 DNA MER1_type? 110 209 -312 210 379 98 21 chrX 47626763 47626998 -114972932 + L2 LINE L2 2934 3186 -86 1798 134 10 17 chrX 47627331 47627622 -114972308 - AluSx SINE Alu -9 303 15 1538 209 0 13 chrX 47627632 47627933 -114971997 - AluJb SINE Alu -15 297 1 253 175 18 18 chrX 47628021 47628078 -114971852 + MLT1I LTR MaLR 353 409 0 1798 133 207 13 chrX 47628626 47629003 -114970927 - LTR7 LTR ERV1 0 450 1 1870 132 43 0 chrX 47629017 47629343 -114970587 + LTR10A LTR ERV1 208 547 -62 489 134 24 0 chrX 47629362 47629444 -114970486 + Alu SINE Alu 228 311 0 1349 130 5 10 chrX 47629448 47629656 -114970274 + AluSx SINE Alu 1 207 -105 639 87 10 19 chrX 47629658 47629761 -114970169 - LTR7 LTR ERV1 0 450 349 1254 110 42 30 chrX 47629866 47630103 -114969827 + AluY SINE Alu 55 294 -17 1747 122 3 91 chrX 47630478 47630798 -114969132 - AluSx SINE Alu -20 292 1 309 131 0 0 chrX 47630800 47630861 -114969069 - AluSp/q SINE Alu 0 303 243 5950 79 2 2 chrX 47630965 47631884 -114968046 + L1P LINE L1 2334 3252 -2894 204 172 0 69 chrX 47631938 47631996 -114967934 + C-rich Low_complexity Low_complexity 3 56 0 184 283 19 0 chrX 47632570 47632623 -114967307 - MIR SINE MIR -98 164 111 327 241 18 9 chrX 47633257 47633369 -114966561 + G-rich Low_complexity Low_complexity 2 114 0 377 270 0 36 chrX 47633496 47633607 -114966323 + L2 LINE L2 2223 2329 -985 553 289 3 111 chrX 47633907 47634222 -114965708 + L2 LINE L2 2217 2497 -817 559 257 35 51 chrX 47634222 47634479 -114965451 - L1MEc LINE L1 -5984 412 160 340 323 0 0 chrX 47634616 47634746 -114965184 + C-rich Low_complexity Low_complexity 1 130 0 549 164 0 39 chrX 47636259 47636363 -114963567 - AluSc SINE Alu -72 237 138 1759 123 23 52 chrX 47636363 47636673 -114963257 - AluSq SINE Alu -12 301 1 1910 127 24 3 chrX 47638264 47638556 -114961374 + AluSx SINE Alu 1 298 -14 560 239 0 0 chrX 47638562 47638679 -114961251 + FLAM_C SINE Alu 3 119 -24 257 303 73 28 chrX 47639119 47639228 -114960702 - L2 LINE L2 -204 3068 2955 469 374 5 0 chrX 47639248 47639451 -114960479 + LTR16B LTR ERVL 9 212 -252 1649 214 77 8 chrX 47639452 47639972 -114959958 - L1MEc LINE L1 -4189 2207 1652 2040 103 7 40 chrX 47640072 47640372 -114959558 - AluSx SINE Alu -22 290 1 299 275 25 17 chrX 47641287 47641407 -114958523 - MER66-int LTR ERV1 -6339 337 217 2176 111 3 16 chrX 47641501 47641808 -114958122 - AluSc SINE Alu -6 303 1 976 124 0 28 chrX 47641809 47641954 -114957976 - FLAM_C SINE Alu -2 141 1 1056 184 31 65 chrX 47641954 47642375 -114957555 + MER66-int LTR ERV1 653 1114 -5562 1496 118 0 0 chrX 47642375 47642570 -114957360 - AluSc SINE Alu -17 292 98 1045 160 0 11 chrX 47642708 47642889 -114957041 + AluSg/x SINE Alu 114 292 -20 2273 86 7 0 chrX 47642896 47643188 -114956742 + AluY SINE Alu 1 294 -17 1651 144 28 21 chrX 47644449 47644740 -114955190 - AluSx SINE Alu -19 293 1 314 211 53 0 chrX 47644743 47644819 -114955111 - AluJ/FRAM SINE Alu 0 302 223 1391 174 20 8 chrX 47645061 47645314 -114954616 + 7SLRNA srpRNA srpRNA 1 256 -64 245 287 57 0 chrX 47647044 47647166 -114952764 + MER74B LTR ERVL 211 339 -283 2287 94 7 7 chrX 47647174 47647481 -114952449 - AluY SINE Alu -4 307 1 664 193 0 14 chrX 47647496 47647641 -114952289 - AluSq SINE Alu -31 282 140 350 333 0 0 chrX 47647649 47647811 -114952119 + C-rich Low_complexity Low_complexity 1 162 0 4211 126 7 5 chrX 47647911 47649035 -114950895 - L1MA2 LINE L1 -452 5852 4730 253 313 7 35 chrX 47649286 47649430 -114950500 + GA-rich Low_complexity Low_complexity 1 140 0 6709 52 4 2 chrX 47649940 47650772 -114949158 + L1PA2 LINE L1 5322 6154 -1 1740 185 0 0 chrX 47650772 47651091 -114948839 + L1M4 LINE L1 3979 4297 -1849 257 327 115 0 chrX 47651729 47651894 -114948036 + MIR SINE MIR 50 233 -29 256 26 77 0 chrX 47651927 47651966 -114947964 - L1MA6 LINE L1 -6 6294 6253 822 157 324 0 chrX 47652801 47653011 -114946919 + AluJb SINE Alu 18 295 -17 478 314 78 29 chrX 47653017 47653259 -114946671 + L1M4 LINE L1 4457 4710 -1436 758 224 0 8 chrX 47653262 47653396 -114946534 + FLAM_A SINE Alu 1 133 0 710 229 65 36 chrX 47653683 47653989 -114945941 + L1MC4 LINE L1 7728 8042 0 217 170 19 19 chrX 47654147 47654200 -114945730 + G-rich Low_complexity Low_complexity 6 58 0 303 130 39 13 chrX 47655290 47655367 -114944563 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 3243 210 42 16 chrX 47655675 47656642 -114943288 - L1ME1 LINE L1 -108 6058 5076 972 183 6 6 chrX 47656644 47656824 -114943106 - MLT1C LTR MaLR -2 465 286 420 20 0 0 chrX 47657996 47658045 -114941885 + (TAG)n Simple_repeat Simple_repeat 2 50 0 2501 97 24 11 chrX 47658987 47659367 -114940563 - LTR1 LTR ERV1 0 785 401 3117 81 27 7 chrX 47659368 47659813 -114940117 + MER11B LTR ERVK 1 454 -782 274 249 85 24 chrX 47659951 47660166 -114939764 + (TGAG)n Simple_repeat Simple_repeat 1 228 0 2217 91 7 3 chrX 47660247 47660544 -114939386 - AluY SINE Alu -10 301 4 1166 195 13 89 chrX 47660548 47660851 -114939079 - AluJb SINE Alu -12 300 21 352 280 21 0 chrX 47662130 47662223 -114937707 - L2 LINE L2 -1 3312 3218 874 191 72 29 chrX 47662318 47662595 -114937335 - L1MD3 LINE L1 0 7995 7707 709 297 19 19 chrX 47662593 47662849 -114937081 - L1MC4a LINE L1 -1048 6760 6505 * 1648 153 40 58 chrX 47664893 47665240 -114934690 + MSTA LTR MaLR 2 342 -86 3939 95 4 24 chrX 47665442 47665922 -114934008 + MER1A DNA MER1_type 4 473 -2227 2288 98 3 0 chrX 47665922 47666217 -114933713 + AluSg SINE Alu 1 296 -14 3939 95 4 24 chrX 47666217 47666271 -114933659 + MER1A DNA MER1_type 473 527 0 273 236 132 42 chrX 47666304 47666448 -114933482 + L1MCb LINE L1 214 370 -5675 10640 62 6 1 chrX 47669828 47671259 -114928671 + L1P LINE L1 803 2239 -3907 363 333 11 11 chrX 47671623 47671797 -114928133 + (TG)n Simple_repeat Simple_repeat 2 175 0 410 328 11 11 chrX 47671824 47672001 -114927929 + (TG)n Simple_repeat Simple_repeat 1 177 0 319 259 0 32 chrX 47672056 47672241 -114927689 + (TG)n Simple_repeat Simple_repeat 1 179 0 194 284 0 9 chrX 47672301 47672417 -114927513 + (TG)n Simple_repeat Simple_repeat 1 115 0 26 50 0 0 chrX 47672636 47672676 -114927254 + GC_rich Low_complexity Low_complexity 1 40 0 3031 161 6 7 chrX 47672834 47673375 -114926555 - L1P LINE L1 -5606 540 1 286 271 45 68 chrX 47673937 47674070 -114925860 + L2 LINE L2 3134 3263 -9 195 42 0 0 chrX 47674073 47674097 -114925833 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 278 215 168 19 chrX 47674320 47674427 -114925503 + MIR SINE MIR 84 206 -56 23 33 0 0 chrX 47674567 47674597 -114925333 + AT_rich Low_complexity Low_complexity 1 30 0 292 283 13 150 chrX 47674954 47675187 -114924743 - MIR SINE MIR -13 249 49 221 271 160 21 chrX 47675193 47675337 -114924593 + MIR SINE MIR 94 257 -5 240 266 18 9 chrX 47675521 47675630 -114924300 + L1ME3 LINE L1 5962 6071 -91 184 289 89 52 chrX 47675725 47675860 -114924070 + MIR SINE MIR 112 251 -11 766 273 28 52 chrX 47676054 47676626 -114923304 + L1ME LINE L1 5010 5569 -593 4947 41 0 0 chrX 47676658 47677295 -114922635 + L1P LINE L1 4767 5403 -743 3413 77 25 0 chrX 47677837 47678279 -114921651 - MLT2A2 LTR ERVL 0 453 1 1333 135 0 5 chrX 47678804 47678997 -114920933 + AluSg/x SINE Alu 100 291 -21 181 200 147 21 chrX 47679436 47679531 -114920399 + L2 LINE L2 3133 3239 -33 186 267 0 0 chrX 47680608 47680698 -114919232 + C-rich Low_complexity Low_complexity 1 90 0 204 278 28 56 chrX 47681188 47681368 -114918562 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 469 265 22 33 chrX 47681383 47681564 -114918366 + (CTCA)n Simple_repeat Simple_repeat 1 179 0 342 316 12 0 chrX 47681506 47681674 -114918256 + (CA)n Simple_repeat Simple_repeat 1 170 0 * 447 260 40 29 chrX 47681616 47681789 -114918141 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 1805 213 47 9 chrX 47684189 47684640 -114915290 - MER110A LTR ERV1 0 468 1 279 0 0 0 chrX 47684748 47684779 -114915151 + (TG)n Simple_repeat Simple_repeat 2 32 0 1475 93 0 18 chrX 47684790 47685016 -114914914 - L1MA5 LINE L1 -11 6289 6068 1349 107 10 10 chrX 47686338 47686534 -114913396 - AluSq SINE Alu -117 196 1 7403 65 17 2 chrX 47687559 47689034 -114910896 - L1P LINE L1 -2545 3601 1927 399 259 59 7 chrX 47689624 47689759 -114910171 - L1ME4a LINE L1 -11 6110 5969 313 282 153 24 chrX 47690131 47690301 -114909629 - L1ME4a LINE L1 -135 5986 5795 311 281 106 19 chrX 47690427 47690587 -114909343 + MIR SINE MIR 88 261 -1 538 67 11 11 chrX 47691847 47691936 -114907994 + (CA)n Simple_repeat Simple_repeat 2 90 0 9584 54 1 4 chrX 47692352 47693583 -114906347 - L1P LINE L1 -4019 2127 901 3316 258 44 10 chrX 47693701 47694709 -114905221 - L1M4 LINE L1 -1680 4466 3425 668 172 0 47 chrX 47694982 47695110 -114904820 - AluSq/x SINE Alu -189 123 2 2368 57 0 3 chrX 47695124 47695420 -114904510 - AluY SINE Alu -16 295 1 1874 109 4 0 chrX 47695471 47695738 -114904192 - AluY SINE Alu -16 295 28 1767 125 50 0 chrX 47695959 47696239 -114903691 - AluSg SINE Alu -16 294 1 885 183 24 33 chrX 47696244 47696457 -114903473 - AluJo SINE Alu -16 296 86 348 344 32 85 chrX 47696655 47697030 -114902900 - L2 LINE L2 -52 3220 2866 282 189 0 0 chrX 47697203 47697256 -114902674 - L1MC4a LINE L1 -228 7580 7528 * 701 106 0 29 chrX 47697237 47697341 -114902589 - L1MC3 LINE L1 -989 6796 6696 6523 73 13 4 chrX 47698633 47699910 -114900020 - L1PA7 LINE L1 -15 6139 4870 195 42 0 0 chrX 47700199 47700223 -114899707 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 457 16 32 0 chrX 47700452 47700484 -114899446 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 457 16 32 0 chrX 47700484 47700546 -114899384 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 463 325 50 28 chrX 47701840 47702298 -114897632 + L1ME3A LINE L1 3176 3643 -2503 503 304 52 52 chrX 47702300 47702724 -114897206 + L1ME3A LINE L1 3663 4086 -2060 828 274 56 81 chrX 47702805 47703309 -114896621 + L1ME3A LINE L1 5657 6147 -23 516 16 0 0 chrX 47703745 47703806 -114896124 + (CA)n Simple_repeat Simple_repeat 1 61 0 891 134 0 0 chrX 47703928 47704077 -114895853 - L1MA9 LINE L1 -5 6307 6159 969 183 20 10 chrX 47704085 47704282 -114895648 - L1PA16 LINE L1 -23 6143 5945 598 209 22 30 chrX 47704284 47704418 -114895512 - FLAM_A SINE Alu 0 133 1 2737 158 25 16 chrX 47704419 47704799 -114895131 - L1MA9 LINE L1 -140 6172 5784 306 73 0 0 chrX 47704799 47704840 -114895090 + (TG)n Simple_repeat Simple_repeat 2 42 0 2737 158 25 16 chrX 47704840 47704971 -114894959 - L1MA9 LINE L1 -528 5784 5656 6728 69 11 17 chrX 47705072 47705947 -114893983 - Harlequin LTR ERV1 -2675 4221 3352 3907 43 2 6 chrX 47705946 47706476 -114893454 - Harlequin LTR ERV1 -4322 2574 2047 * 778 35 53 0 chrX 47706484 47706597 -114893333 + AluY SINE Alu 2 120 -191 1214 148 157 0 chrX 47706914 47707150 -114892780 - AluJb SINE Alu -19 293 21 5995 50 3 0 chrX 47707268 47707990 -114891940 + LTR5 LTR ERVK 1 724 -245 504 103 51 0 chrX 47708092 47708170 -114891760 - AluS SINE Alu -230 83 2 2006 104 3 10 chrX 47708177 47708350 -114891580 - AluSq SINE Alu -6 307 135 2388 44 7 3 chrX 47708350 47708646 -114891284 - AluY SINE Alu -14 297 1 2006 104 3 10 chrX 47708646 47708761 -114891169 - AluSq SINE Alu -178 135 21 832 221 6 0 chrX 47708898 47709056 -114890874 - AluJb SINE Alu -16 296 138 700 188 42 55 chrX 47709061 47709179 -114890751 + MER20 DNA MER1_type 57 174 -45 1384 186 24 20 chrX 47709179 47709474 -114890456 + AluJo SINE Alu 1 296 -16 700 188 42 55 chrX 47709474 47709520 -114890410 + MER20 DNA MER1_type 174 219 0 306 124 101 0 chrX 47709786 47709875 -114890055 + L1M LINE L1 5300 5397 -903 4840 191 35 44 chrX 47709884 47711424 -114888506 - MER52A LTR ERV1 0 1755 532 619 266 0 0 chrX 47711413 47711541 -114888389 - MER52A LTR ERV1 -1627 128 1 * 2369 131 16 0 chrX 47711542 47711916 -114888014 + L1M1 LINE L1 5406 5785 -515 3450 158 78 240 chrX 47712540 47713688 -114886242 + MER52A LTR ERV1 59 1105 -192 1782 139 17 0 chrX 47714830 47715117 -114884813 + AluSc SINE Alu 1 292 -17 290 196 18 0 chrX 47715334 47715390 -114884540 - MLT1I LTR MaLR 0 409 353 687 265 0 0 chrX 47715488 47715654 -114884276 + AluJb SINE Alu 9 174 -138 2346 183 8 55 chrX 47716056 47716586 -114883344 + L1MA10 LINE L1 5819 6323 -11 1040 248 100 22 chrX 47716607 47717095 -114882835 + L1M4 LINE L1 2415 2940 -3206 515 294 120 15 chrX 47717110 47717674 -114882256 + L1M4 LINE L1 3035 3660 -2486 249 290 46 15 chrX 47717675 47717806 -114882124 + L1M4 LINE L1 3816 3950 -2196 1677 216 59 11 chrX 47717870 47718064 -114881866 - L1MD3 LINE L1 -2 7993 7810 4435 136 19 6 chrX 47718064 47718762 -114881168 - MER39 LTR ERV1 0 707 1 1677 216 59 11 chrX 47718762 47719011 -114880919 - L1MD3 LINE L1 -185 7810 7529 369 223 32 21 chrX 47719016 47719110 -114880820 + MLT1F1 LTR MaLR 40 134 -433 412 121 0 0 chrX 47719110 47719176 -114880754 + L1MD3 LINE L1 7414 7479 -516 813 225 84 16 chrX 47719234 47719425 -114880505 + MER21B LTR ERV1 657 860 -3 1810 261 63 10 chrX 47719439 47720022 -114879908 - L1MEc LINE L1 -3355 2860 2247 2237 143 3 34 chrX 47720023 47720408 -114879522 - L1PB4 LINE L1 -2 6154 5782 466 178 11 0 chrX 47720766 47720856 -114879074 - L1PB4 LINE L1 -959 5187 5097 * 2220 273 52 32 chrX 47720855 47721923 -114878007 - L1MEc LINE L1 -4098 2298 1210 1454 196 84 21 chrX 47722027 47722409 -114877521 - L1PB4 LINE L1 -1800 4346 3941 1765 113 4 0 chrX 47722412 47722669 -114877261 + AluSp SINE Alu 49 306 -7 1690 109 60 25 chrX 47722670 47722955 -114876975 + AluY SINE Alu 1 295 -16 1762 260 71 42 chrX 47723622 47724626 -114875304 - L1ME3A LINE L1 -11 6159 5127 1164 353 50 35 chrX 47724699 47725651 -114874279 + L1MB1 LINE L1 2756 3722 -2424 12312 44 0 1 chrX 47725784 47727276 -114872654 - L1P LINE L1 -1341 4805 3315 205 284 40 47 chrX 47730031 47730179 -114869751 + (CGTG)n Simple_repeat Simple_repeat 4 150 0 2443 221 7 101 chrX 47731744 47732634 -114867296 + L1MB1 LINE L1 3718 4523 -1623 2324 204 45 5 chrX 47732639 47733193 -114866737 + L1MB1 LINE L1 5257 5832 -336 3860 181 43 18 chrX 47733197 47733937 -114865993 + L1M1 LINE L1 16 774 -6791 216 167 42 21 chrX 47735082 47735130 -114864800 - L3 LINE CR1 -917 660 612 1573 156 181 11 chrX 47736800 47736835 -114863095 - MLT2D LTR ERVL 0 414 386 324 0 0 0 chrX 47736835 47736871 -114863059 + (TG)n Simple_repeat Simple_repeat 2 37 0 1573 156 181 11 chrX 47736871 47737188 -114862742 - MLT2D LTR ERVL -28 386 2 3105 216 43 1 chrX 47738081 47739298 -114860632 + L1MCa LINE L1 1864 3134 -3292 260 204 0 0 chrX 47739412 47739466 -114860464 + LTR10A LTR ERV1 556 609 0 428 71 57 43 chrX 47739466 47739536 -114860394 + Alu SINE Alu 222 292 -19 951 70 0 8 chrX 47739538 47739666 -114860264 + FLAM_C SINE Alu 1 127 -16 1578 179 26 23 chrX 47739758 47739926 -114860004 - AluSx SINE Alu -3 309 138 2216 112 3 0 chrX 47739926 47740222 -114859708 - AluSq SINE Alu -14 299 3 1578 179 26 23 chrX 47740222 47740361 -114859569 - AluSx SINE Alu -174 138 1 1474 95 43 9 chrX 47740371 47740582 -114859348 - AluSq SINE Alu -15 298 81 336 267 0 11 chrX 47741301 47741391 -114858539 - MER117 DNA MER1_type -108 89 1 183 311 19 29 chrX 47741624 47741727 -114858203 - L2 LINE L2 -2071 1243 1142 663 228 68 6 chrX 47742431 47742593 -114857337 - MER45A DNA AcHobo -3 175 4 441 0 0 0 chrX 47742726 47742775 -114857155 + (CA)n Simple_repeat Simple_repeat 2 50 0 929 88 0 0 chrX 47742898 47743023 -114856907 - L1P LINE L1 -6021 125 1 * 3011 182 4 13 chrX 47743021 47743259 -114856671 - L1M2 LINE L1 -703 5609 5370 2147 122 0 3 chrX 47743259 47743555 -114856375 - AluY SINE Alu -16 295 1 3011 182 4 13 chrX 47743555 47744216 -114855714 - L1M2 LINE L1 -942 5370 4713 3205 155 34 12 chrX 47744220 47744896 -114855034 - L1M2 LINE L1 -1544 4602 3912 2261 153 22 136 chrX 47744896 47745530 -114854400 + L1MA8 LINE L1 5449 6010 -281 1131 197 72 12 chrX 47745703 47746023 -114853907 - L1M2 LINE L1 -2298 3848 3510 308 169 31 15 chrX 47746024 47746089 -114853841 - L1MD3 LINE L1 -10 7985 7920 254 203 47 31 chrX 47746151 47746215 -114853715 - L1MC3 LINE L1 -225 7560 7496 1591 172 26 23 chrX 47748122 47748285 -114851645 - AluSx SINE Alu -8 304 138 2219 104 3 3 chrX 47748285 47748582 -114851348 - AluSq SINE Alu -14 299 3 1591 172 26 23 chrX 47748582 47748721 -114851209 - AluSx SINE Alu -174 138 1 1967 103 28 11 chrX 47748730 47749012 -114850918 - AluSg SINE Alu -10 300 14 1233 157 80 70 chrX 47749099 47749398 -114850532 + AluJo SINE Alu 1 302 -10 20468 39 8 0 chrX 47750276 47752969 -114846961 - L1P LINE L1 -2470 3676 962 5260 154 29 46 chrX 47753992 47755070 -114844860 + Tigger2 DNA MER2_type 2 1060 -1658 775 64 0 0 chrX 47755092 47755201 -114844729 - L1PA4 LINE L1 -930 5216 5108 5944 30 1 0 chrX 47755201 47755968 -114843962 + L1PA4 LINE L1 5217 5984 -171 2177 120 0 3 chrX 47756795 47757094 -114842836 + AluSp SINE Alu 1 298 -15 962 142 0 0 chrX 47757102 47757236 -114842694 + AluSq/x SINE Alu 2 135 -178 1853 159 3 0 chrX 47757236 47757532 -114842398 + AluSx SINE Alu 1 297 -15 1125 129 6 0 chrX 47757905 47758068 -114841862 - AluSc SINE Alu 0 309 146 300 175 35 0 chrX 47758768 47758825 -114841105 - AluSp/q SINE Alu -5 298 240 1453 84 0 0 chrX 47758826 47759005 -114840925 - AluY SINE Alu -132 179 1 702 220 122 98 chrX 47759039 47759134 -114840796 - MER66B LTR ERV1 0 486 395 729 213 6 52 chrX 47759134 47759308 -114840622 - FRAM SINE Alu 0 166 1 702 220 122 98 chrX 47759308 47759323 -114840607 - MER66B LTR ERV1 -91 395 382 2003 112 22 0 chrX 47759323 47759592 -114840338 - AluSx SINE Alu -37 275 1 702 220 122 98 chrX 47759592 47759817 -114840113 - MER66B LTR ERV1 -104 382 142 2177 217 60 18 chrX 47761020 47761414 -114838516 + L1 LINE L1 3828 4257 -1889 2512 83 0 13 chrX 47761414 47761728 -114838202 + AluY SINE Alu 2 311 0 2177 217 60 18 chrX 47761728 47761937 -114837993 + L1 LINE L1 4257 4456 -1690 665 242 55 0 chrX 47761937 47762102 -114837828 + FRAM SINE Alu 1 167 -9 316 235 52 17 chrX 47762126 47762241 -114837689 + L1 LINE L1 4566 4684 -1462 1988 140 0 7 chrX 47762254 47762546 -114837384 - AluSx SINE Alu -15 297 8 6287 54 24 6 chrX 47762546 47763383 -114836547 + LTR13 LTR ERVK 1 852 -155 1590 150 15 0 chrX 47763517 47763777 -114836153 - AluSp SINE Alu -49 264 1 2248 105 16 3 chrX 47763777 47764082 -114835848 - AluSp SINE Alu -4 309 1 2095 128 0 3 chrX 47764082 47764363 -114835567 - AluSx SINE Alu -18 294 14 703 142 55 8 chrX 47764368 47764495 -114835435 - FLAM_C SINE Alu 0 133 1 1209 161 0 5 chrX 47764801 47764932 -114834998 + AluSg SINE Alu 4 135 -175 2447 91 0 0 chrX 47764932 47765228 -114834702 + AluSg SINE Alu 2 297 -13 1209 161 0 5 chrX 47765228 47765289 -114834641 + AluSg SINE Alu 135 195 -115 2128 116 0 23 chrX 47765510 47765820 -114834110 - AluSc SINE Alu -6 303 1 2366 117 0 0 chrX 47765820 47766128 -114833802 - AluSx SINE Alu -4 308 1 2240 105 7 0 chrX 47766455 47766751 -114833179 - AluSx SINE Alu -14 298 1 945 142 19 0 chrX 47770985 47771140 -114828790 - AluSq SINE Alu -29 284 127 2067 123 10 0 chrX 47771209 47771511 -114828419 - AluSc SINE Alu -4 305 1 1499 196 181 5 chrX 47773558 47773957 -114825973 - MER66-int LTR ERV1 -4677 1999 1531 757 227 22 0 chrX 47774057 47774242 -114825688 + L1 LINE L1 2456 2644 -3502 4026 183 39 9 chrX 47774246 47775127 -114824803 + L1 LINE L1 3088 3994 -2152 14242 67 5 4 chrX 47775133 47777064 -114822866 + L1P LINE L1 13 1945 -4201 2253 116 3 0 chrX 47777861 47778163 -114821767 + AluSx SINE Alu 1 303 -9 2132 96 20 10 chrX 47778171 47778463 -114821467 + AluY SINE Alu 1 295 -16 2334 62 20 3 chrX 47779165 47779457 -114820473 - AluY SINE Alu -13 298 2 1461 186 69 9 chrX 47779772 47780106 -114819824 + Harlequin LTR ERV1 1378 1731 -4918 330 216 79 26 chrX 47780093 47780417 -114819513 + Harlequin LTR ERV1 860 1123 -5773 * 864 254 57 25 chrX 47780572 47781148 -114818782 - L1M4 LINE L1 -492 5686 5080 13392 188 10 3 chrX 47781149 47782333 -114817597 + L1PA14 LINE L1 2362 3537 -2624 254 50 25 0 chrX 47782333 47782373 -114817557 + (CAA)n Simple_repeat Simple_repeat 2 42 0 13392 188 10 3 chrX 47782373 47785021 -114814909 + L1PA14 LINE L1 3537 6160 -1 14076 141 13 5 chrX 47785201 47787782 -114812148 + Harlequin LTR ERV1 4281 6895 -1 2925 46 54 5 chrX 47787782 47788153 -114811777 + LTR2B LTR ERV1 1 389 -101 505 326 96 33 chrX 47788255 47788716 -114811214 - L1 LINE L1 -2839 4009 1737 518 266 106 18 chrX 47788842 47789060 -114810870 + MER63 DNA MER1_type 824 1060 0 1624 126 29 48 chrX 47789237 47789546 -114810384 - AluSx SINE Alu -8 304 2 903 76 0 0 chrX 47789547 47789665 -114810265 - AluSg/x SINE Alu -11 299 182 180 0 0 0 chrX 47790142 47790162 -114809768 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1555 112 43 0 chrX 47790176 47790408 -114809522 + AluSx SINE Alu 1 242 -70 926 94 16 0 chrX 47790486 47790614 -114809316 + AluJo SINE Alu 85 214 -98 268 71 71 0 chrX 47790616 47790658 -114809272 + FLAM SINE Alu 82 126 -7 2134 67 3 11 chrX 47790664 47790974 -114808956 + AluY SINE Alu 1 308 0 7911 58 2 0 chrX 47792319 47793334 -114806596 - L1P LINE L1 -2422 3724 2708 3990 151 35 0 chrX 47793435 47794069 -114805861 - Tigger2 DNA MER2_type -929 1789 1134 1809 151 10 3 chrX 47794081 47794386 -114805544 - AluSx SINE Alu 0 312 6 234 268 0 49 chrX 47794419 47794501 -114805429 + C-rich Low_complexity Low_complexity 1 78 0 390 341 0 0 chrX 47794524 47794697 -114805233 + C-rich Low_complexity Low_complexity 1 173 0 1636 143 4 8 chrX 47795121 47795379 -114804551 - AluSq SINE Alu -56 257 1 848 192 136 9 chrX 47795391 47795605 -114804325 - AluJb SINE Alu -26 286 46 1368 150 15 8 chrX 47795606 47795872 -114804058 + AluSg SINE Alu 6 273 -37 4700 72 2 6 chrX 47796023 47796650 -114803280 + L1P LINE L1 3722 4345 -1801 1503 181 31 16 chrX 47797345 47797665 -114802265 + L1M1 LINE L1 3237 3561 -4004 1134 151 6 6 chrX 47797667 47797846 -114802084 - THE1C LTR MaLR 0 375 197 2346 106 0 0 chrX 47797847 47798159 -114801771 + MER9 LTR ERVK 3 314 -197 229 367 0 0 chrX 47800430 47800569 -114799361 + C-rich Low_complexity Low_complexity 1 139 0 4028 34 2 0 chrX 47800669 47801139 -114798791 + L1PA5 LINE L1 5676 6146 -8 1582 173 7 0 chrX 47801311 47801606 -114798324 - AluJo SINE Alu -15 297 1 322 307 39 13 chrX 47801611 47801764 -114798166 - L1MA10 LINE L1 -9 6325 6169 320 256 40 32 chrX 47801768 47801893 -114798037 - L1ME1 LINE L1 -231 5935 5810 267 271 11 18 chrX 47802030 47802309 -114797621 + G-rich Low_complexity Low_complexity 1 276 0 8169 76 1 1 chrX 47803415 47804704 -114795226 - L1P2 LINE L1 -512 5643 4354 2204 112 0 6 chrX 47805266 47805578 -114794352 + AluSq SINE Alu 1 310 -3 310 263 0 17 chrX 47805644 47805762 -114794168 + FLAM_C SINE Alu 3 118 -15 496 322 0 0 chrX 47805821 47805995 -114793935 + C-rich Low_complexity Low_complexity 1 174 0 194 186 116 23 chrX 47806182 47806225 -114793705 - L2 LINE L2 -248 3065 3019 427 209 119 130 chrX 47806252 47806429 -114793501 - MER5B DNA MER1_type -3 175 1 586 286 55 35 chrX 47806434 47806689 -114793241 - L2 LINE L2 -339 2975 2716 652 208 37 12 chrX 47806701 47806889 -114793041 - L1MC4a LINE L1 -297 5824 5641 223 248 148 50 chrX 47807536 47807637 -114792293 + MIR SINE MIR 131 241 -21 1988 129 7 10 chrX 47809438 47809748 -114790182 - AluSx SINE Alu -3 309 1 182 333 0 39 chrX 47810107 47810185 -114789745 + L3 LINE CR1 1192 1266 -311 540 319 54 5 chrX 47810763 47810967 -114788963 - MIR SINE MIR -2 260 47 26 50 0 0 chrX 47811210 47811250 -114788680 + AT_rich Low_complexity Low_complexity 1 40 0 481 321 110 31 chrX 47811495 47811785 -114788145 + L1ME3 LINE L1 5636 5948 -214 24 0 0 0 chrX 47812023 47812047 -114787883 + AT_rich Low_complexity Low_complexity 1 24 0 508 334 74 38 chrX 47812726 47813118 -114786812 + L3 LINE CR1 1057 1462 -115 199 227 0 0 chrX 47813258 47813302 -114786628 - L3 LINE CR1 -6 1571 1528 401 300 162 29 chrX 47813480 47813506 -114786424 + MIR SINE MIR 3 24 -238 2235 103 3 0 chrX 47813506 47813817 -114786113 + AluSp SINE Alu 1 312 -1 401 300 162 29 chrX 47813817 47814000 -114785930 + MIR SINE MIR 24 240 -22 354 188 35 47 chrX 47814155 47814240 -114785690 + MER103 DNA DNA 67 150 -16 673 323 39 22 chrX 47814303 47814532 -114785398 - L3 LINE CR1 -1155 422 190 320 259 31 68 chrX 47815550 47815712 -114784218 + MIR3 SINE MIR 23 178 -30 213 333 117 17 chrX 47816442 47816562 -114783368 - MIR SINE MIR -21 241 110 240 111 0 0 chrX 47816726 47816762 -114783168 + (T)n Simple_repeat Simple_repeat 1 36 0 519 156 0 0 chrX 47816802 47816892 -114783038 - AluY SINE Alu -3 308 219 26 0 0 0 chrX 47817033 47817059 -114782871 + AT_rich Low_complexity Low_complexity 1 26 0 337 186 59 59 chrX 47817391 47817509 -114782421 + L2 LINE L2 2689 2806 -508 1991 97 31 66 chrX 47817736 47818055 -114781875 - AluSg SINE Alu -2 308 1 510 238 26 84 chrX 47818148 47818375 -114781555 + L1MC5 LINE L1 7226 7439 -522 833 242 49 24 chrX 47819298 47819585 -114780345 - MLT1L LTR MaLR 0 609 281 373 308 103 19 chrX 47820043 47820199 -114779731 + MIR SINE MIR 14 182 -80 1574 214 97 29 chrX 47820539 47821015 -114778915 - MER21B LTR ERV1 -56 807 276 1967 94 50 0 chrX 47821016 47821293 -114778637 - AluSx SINE Alu -21 291 1 937 135 9 2 chrX 47821396 47821554 -114778376 - L1PA16 LINE L1 -338 5828 5670 277 219 271 0 chrX 47821559 47821655 -114778275 - L2 LINE L2 -648 2666 2545 236 317 75 12 chrX 47822922 47823106 -114776824 - MIR SINE MIR -33 229 41 240 250 0 18 chrX 47823305 47823361 -114776569 + L2 LINE L2 3193 3247 -25 22 0 0 0 chrX 47823655 47823677 -114776253 + AT_rich Low_complexity Low_complexity 1 22 0 1824 225 16 50 chrX 47824862 47825021 -114774909 + HERVL68 LTR ERVL 1284 1447 -1590 836 140 0 29 chrX 47825021 47825157 -114774773 - FLAM_C SINE Alu 0 133 2 1824 225 16 50 chrX 47825157 47825481 -114774449 + HERVL68 LTR ERVL 1447 1751 -1286 292 133 33 0 chrX 47825492 47825552 -114774378 + CT-rich Low_complexity Low_complexity 2 63 0 1378 170 76 4 chrX 47825561 47825721 -114774209 - AluJo SINE Alu -14 298 151 324 0 0 0 chrX 47825721 47825757 -114774173 + (TG)n Simple_repeat Simple_repeat 2 37 0 1378 170 76 4 chrX 47825757 47825872 -114774058 - AluJo SINE Alu -161 151 3 1191 197 48 34 chrX 47825876 47825909 -114774021 + HERVL68 LTR ERVL 1740 1771 -1266 4335 114 25 8 chrX 47825909 47826551 -114773379 + MER39B LTR ERV1 1 653 0 1191 197 48 34 chrX 47826551 47826811 -114773119 + HERVL68 LTR ERVL 1771 2037 -1000 913 196 6 0 chrX 47826816 47826989 -114772941 + AluJb SINE Alu 137 310 -2 296 300 79 21 chrX 47827166 47827356 -114772574 + HERVL68 LTR ERVL 2218 2418 -619 376 222 14 140 chrX 47827562 47827636 -114772294 + MLT1B LTR MaLR 105 187 -203 2127 110 3 3 chrX 47827636 47827946 -114771984 + AluSx SINE Alu 1 310 -2 376 222 14 140 chrX 47827946 47827959 -114771971 + MLT1B LTR MaLR 187 200 -190 252 0 0 0 chrX 47827959 47827987 -114771943 + (TC)n Simple_repeat Simple_repeat 1 28 0 376 222 14 140 chrX 47827987 47828119 -114771811 + MLT1B LTR MaLR 200 297 -93 3264 225 52 30 chrX 47828219 47829065 -114770865 + HERVL68 LTR ERVL 2039 2903 -134 1821 187 31 8 chrX 47829065 47829418 -114770512 + MLT2D LTR ERVL 1 361 -53 255 103 0 0 chrX 47829423 47829462 -114770468 + (TC)n Simple_repeat Simple_repeat 2 40 0 396 0 0 0 chrX 47829462 47829506 -114770424 + (CA)n Simple_repeat Simple_repeat 2 45 0 471 139 14 0 chrX 47829532 47829604 -114770326 + HERVL68 LTR ERVL 2904 2976 -61 199 407 29 29 chrX 47829712 47829852 -114770078 - L2 LINE L2 -8 3264 3125 484 273 43 14 chrX 47830017 47830226 -114769704 - MER20B DNA MER1_type -287 496 282 253 206 151 0 chrX 47830247 47830320 -114769610 - MER20B DNA MER1_type -676 107 24 1603 225 45 26 chrX 47830788 47831295 -114768635 - L1MCc LINE L1 -1367 5574 5058 * 2356 243 84 65 chrX 47831294 47832471 -114767459 - L1MCc LINE L1 -2330 4611 3412 674 93 9 0 chrX 47832476 47832584 -114767346 + (TA)n Simple_repeat Simple_repeat 2 110 0 266 247 26 0 chrX 47832584 47832661 -114767269 - L1MCc LINE L1 -6328 95 17 315 305 11 11 chrX 47832730 47832825 -114767105 + MER58 DNA MER1_type 1 95 -120 791 281 96 14 chrX 47832859 47833222 -114766708 - L1MCc LINE L1 -3571 3370 2978 229 103 0 0 chrX 47833227 47833266 -114766664 - Alu SINE Alu -2 300 262 1008 261 20 45 chrX 47833278 47833631 -114766299 - L1MCc LINE L1 -6063 360 17 365 259 24 1 chrX 47833715 47833895 -114766035 + MER58 DNA MER1_type 16 2417 -3 1781 115 0 15 chrX 47834160 47834430 -114765500 + AluSx SINE Alu 39 304 -8 1243 193 106 90 chrX 47834436 47834923 -114765007 + MER66A LTR ERV1 106 478 0 1671 142 194 3 chrX 47834924 47835291 -114764639 - L1M2 LINE L1 -577 5735 5299 541 202 0 0 chrX 47835318 47835407 -114764523 - AluJb SINE Alu -75 237 149 306 221 143 14 chrX 47836324 47836459 -114763471 - L1ME4a LINE L1 0 6121 5968 380 140 0 43 chrX 47836459 47836552 -114763378 + L1MA7 LINE L1 6199 6287 -4 1569 182 48 0 chrX 47836681 47836972 -114762958 + AluJb SINE Alu 1 305 -7 208 257 0 14 chrX 47836978 47837048 -114762882 + A-rich Low_complexity Low_complexity 4 72 0 26 30 0 0 chrX 47837329 47837362 -114762568 + AT_rich Low_complexity Low_complexity 1 33 0 237 239 77 111 chrX 47838082 47838199 -114761731 + MER41A LTR ERV1 191 303 -251 * 1378 159 70 92 chrX 47838194 47838553 -114761377 + MER66A LTR ERV1 128 478 0 264 295 82 0 chrX 47839387 47839509 -114760421 + MER112 DNA MER1_type 124 255 -5 1839 137 65 0 chrX 47839634 47839926 -114760004 - AluSx SINE Alu -1 311 1 323 183 0 0 chrX 47840527 47840587 -114759343 - MSTB2 LTR MaLR -397 60 1 262 184 0 0 chrX 47840589 47840638 -114759292 - MLT1C LTR MaLR -272 195 147 2232 123 0 3 chrX 47841386 47841688 -114758242 + AluSx SINE Alu 1 301 -11 1502 208 65 25 chrX 47841852 47842311 -114757619 + MER110A LTR ERV1 26 482 -2 2759 107 8 3 chrX 47842385 47842758 -114757172 - THE1C LTR MaLR 0 375 1 1208 208 4 12 chrX 47842979 47843229 -114756701 + AluJo SINE Alu 45 292 -20 23 33 0 0 chrX 47843234 47843264 -114756666 + AT_rich Low_complexity Low_complexity 1 30 0 191 299 173 24 chrX 47846166 47846293 -114753637 - MIR SINE MIR -111 151 6 1528 193 3 33 chrX 47847126 47847432 -114752498 + AluJb SINE Alu 1 297 -15 2133 134 13 0 chrX 47849284 47849590 -114750340 - AluSx SINE Alu -2 310 1 2363 110 0 0 chrX 47850763 47851072 -114748858 - AluSc SINE Alu 0 309 1 1265 217 54 7 chrX 47851120 47851397 -114748533 + AluJo SINE Alu 1 290 -12 1789 187 158 13 chrX 47851442 47851827 -114748103 + MER21B LTR ERV1 1 441 -422 300 313 69 7 chrX 47852011 47852155 -114747775 + MIR SINE MIR 50 202 -60 29 0 0 0 chrX 47852331 47852360 -114747570 + AT_rich Low_complexity Low_complexity 1 29 0 856 318 75 25 chrX 47852625 47853115 -114746815 - REP3 LTR ERV -47 515 1 193 318 16 0 chrX 47853226 47853289 -114746641 - L2 LINE L2 -5 3308 3245 634 260 128 0 chrX 47853482 47853724 -114746206 - L1M4 LINE L1 -1235 4911 4639 501 300 186 6 chrX 47853751 47854078 -114745852 - L2 LINE L2 -1531 1783 1398 226 167 0 0 chrX 47854128 47854164 -114745766 + MLT1B LTR MaLR 1 36 -354 2253 156 10 10 chrX 47854202 47854587 -114745343 + MLT1B LTR MaLR 4 388 -2 239 222 74 0 chrX 47858211 47858265 -114741665 - MIR SINE MIR -111 151 94 8276 19 1 1 chrX 47858873 47860074 -114739856 + L1PA3 LINE L1 4955 6155 0 330 250 23 0 chrX 47860954 47861042 -114738888 - L1M4 LINE L1 -2462 3684 3595 252 0 0 0 chrX 47861115 47861143 -114738787 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 746 202 0 0 chrX 47861350 47861474 -114738456 - FLAM_C SINE Alu -9 124 1 1618 206 6 3 chrX 47862988 47863308 -114736622 + L1 LINE L1 4819 5139 -1007 843 235 54 64 chrX 47863322 47863621 -114736309 + L1MEc LINE L1 1987 2288 -3927 1417 160 113 0 chrX 47863621 47863877 -114736053 + AluJo SINE Alu 1 285 -27 843 235 54 64 chrX 47863877 47864291 -114735639 + L1MEc LINE L1 2288 2644 -3571 504 0 0 0 chrX 47864620 47864676 -114735254 + (TA)n Simple_repeat Simple_repeat 1 56 0 2517 169 11 55 chrX 47864678 47865222 -114734708 - LTR1 LTR ERV1 -265 520 1 453 36 0 0 chrX 47865337 47865392 -114734538 + (TA)n Simple_repeat Simple_repeat 1 55 0 503 247 52 26 chrX 47865392 47865586 -114734344 + L1M4 LINE L1 4286 4484 -1662 249 33 0 0 chrX 47865597 47865627 -114734303 + (TA)n Simple_repeat Simple_repeat 1 30 0 587 60 0 0 chrX 47865633 47865700 -114734230 - AluSg/x SINE Alu -30 280 214 1900 243 84 19 chrX 47865706 47866327 -114733603 + L1M4 LINE L1 4476 5136 -1010 182 172 0 0 chrX 47866490 47866519 -114733411 - MIR SINE MIR -72 190 162 504 299 25 30 chrX 47866709 47866910 -114733020 - MIR SINE MIR 0 262 63 198 339 50 41 chrX 47867267 47867388 -114732542 - MER5A DNA MER1_type 0 189 68 198 0 0 0 chrX 47868173 47868195 -114731735 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5245 99 16 4 chrX 47868209 47868946 -114730984 - L1PB1 LINE L1 -21 6846 6101 1558 16 11 37 chrX 47868946 47869133 -114730797 - L1PA4 LINE L1 -2 6153 5972 756 33 0 0 chrX 47869133 47869223 -114730707 + L1PA4 LINE L1 5855 5944 -210 * 15243 205 18 5 chrX 47869219 47870861 -114729069 - L1PB1 LINE L1 -748 6114 4495 1147 31 0 0 chrX 47870861 47870991 -114728939 - L1PA6 LINE L1 -3 6151 6022 15243 205 18 5 chrX 47870991 47872967 -114726963 - L1PB1 LINE L1 -2367 4495 2474 2488 174 11 2 chrX 47873067 47873537 -114726393 - L1PB1 LINE L1 -4970 1893 1420 3206 227 73 8 chrX 47873542 47874326 -114725604 - L1PB1 LINE L1 -5998 865 31 888 184 68 24 chrX 47874332 47874539 -114725391 - AluJo SINE Alu -13 299 84 237 246 55 36 chrX 47874762 47874872 -114725058 + MER20B DNA MER1_type 27 138 -645 * 458 296 41 10 chrX 47874869 47875065 -114724865 + MER20B DNA MER1_type 290 491 -292 216 0 0 0 chrX 47875596 47875620 -114724310 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1438 240 0 20 chrX 47875620 47875978 -114723952 - MLT2D LTR ERVL -63 351 1 2230 209 30 27 chrX 47875988 47876549 -114723381 - HERVL68-D LTR ERVL -144 2893 2331 312 345 47 0 chrX 47877188 47877336 -114722594 - MIR SINE MIR -62 200 46 21 0 0 0 chrX 47878005 47878026 -114721904 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chrX 47878133 47878158 -114721772 + AT_rich Low_complexity Low_complexity 1 25 0 245 218 11 58 chrX 47878351 47878438 -114721492 + MIR SINE MIR 180 262 0 755 161 16 16 chrX 47878549 47878673 -114721257 + FLAM_C SINE Alu 1 124 -9 332 235 25 0 chrX 47878956 47879037 -114720893 + L1M4 LINE L1 3595 3677 -2469 1525 161 7 179 chrX 47879042 47879484 -114720446 + MER47A DNA MER2_type 1 366 0 1219 264 70 37 chrX 47879484 47880113 -114719817 + L1M4 LINE L1 3681 4330 -1816 3753 190 102 19 chrX 47880118 47880904 -114719026 - MER21B LTR ERV1 -12 851 1 1489 151 180 65 chrX 47880906 47881290 -114718640 - MSTA LTR MaLR 0 428 1 1178 213 18 15 chrX 47881375 47881647 -114718283 - AluJo SINE Alu -39 273 1 295 319 0 0 chrX 47882406 47882497 -114717433 - MER94 DNA DNA -39 95 5 1541 98 0 0 chrX 47883393 47883587 -114716343 - AluSx SINE Alu -118 194 1 1256 202 4 0 chrX 47887179 47887412 -114712518 - AluJo SINE Alu -34 278 45 1501 219 50 48 chrX 47887700 47888179 -114711751 - MER110A LTR ERV1 -2 466 19 2329 91 0 3 chrX 47889552 47889848 -114710082 - AluSc SINE Alu -14 295 1 271 292 83 0 chrX 47889907 47890027 -114709903 - MER112 DNA MER1_type -7 253 124 2781 133 0 23 chrX 47890833 47891262 -114708668 - L1PA11 LINE L1 -8 6166 5748 431 197 163 14 chrX 47891440 47891587 -114708343 - L1M4 LINE L1 -1227 4919 4751 183 100 0 0 chrX 47891632 47891662 -114708268 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 445 252 7 7 chrX 47891873 47892008 -114707922 - L2 LINE L2 -1655 1659 1525 287 133 0 0 chrX 47892037 47892082 -114707848 + MER77 LTR ERV1 561 605 0 759 296 43 72 chrX 47892130 47892585 -114707345 + HERVL68-D LTR ERVL 6 522 -2515 1544 183 29 0 chrX 47892585 47892864 -114707066 + AluJo SINE Alu 1 287 -25 759 296 43 72 chrX 47892864 47893096 -114706834 + HERVL68-D LTR ERVL 522 759 -2278 1648 233 59 33 chrX 47893114 47893625 -114706305 + HERVL68-D LTR ERVL 1834 2357 -680 543 192 0 0 chrX 47893807 47893906 -114706024 + FLAM_C SINE Alu 45 143 0 903 173 26 0 chrX 47893923 47894079 -114705851 + FRAM SINE Alu 1 154 -22 2018 104 35 3 chrX 47894221 47894510 -114705420 + AluSx SINE Alu 1 298 -14 1420 177 0 4 chrX 47894950 47895193 -114704737 - AluJb SINE Alu 0 312 71 291 191 0 0 chrX 47896964 47897027 -114702903 + (CA)n Simple_repeat Simple_repeat 1 63 0 1796 117 25 25 chrX 47897614 47897934 -114701996 + AluSx SINE Alu 1 320 0 1574 209 37 27 chrX 47898829 47899230 -114700700 + HERVL68-D LTR ERVL 2489 2893 -144 1452 224 8 20 chrX 47899240 47899597 -114700333 + MLT2D LTR ERVL 1 353 -61 180 0 0 0 chrX 47899608 47899628 -114700302 + (TC)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chrX 47899628 47899649 -114700281 + (CA)n Simple_repeat Simple_repeat 1 21 0 428 100 17 0 chrX 47899685 47899745 -114700185 + HERVL68 LTR ERVL 2912 2972 -65 410 284 50 15 chrX 47900150 47900351 -114699579 - MER20B DNA MER1_type -286 497 290 268 243 29 0 chrX 47900380 47900450 -114699480 - MER20B DNA MER1_type -676 107 36 998 234 89 0 chrX 47900667 47900924 -114699006 + AluJb SINE Alu 6 285 -27 533 297 26 5 chrX 47901036 47901231 -114698699 - MER20B DNA MER1_type -294 489 291 823 201 72 14 chrX 47901569 47901778 -114698152 + AluJo SINE Alu 85 305 -7 489 309 10 29 chrX 47903027 47903231 -114696699 + MIR SINE MIR 63 262 0 2452 250 60 14 chrX 47903612 47904440 -114695490 - L1M4 LINE L1 -1008 5138 4273 1274 299 25 48 chrX 47904455 47905218 -114694712 - L1M4 LINE L1 -2330 3816 3072 778 132 15 37 chrX 47905218 47905354 -114694576 - AluSg/x SINE Alu 0 312 180 2340 105 0 0 chrX 47905369 47905673 -114694257 - AluSg SINE Alu -6 304 1 1958 221 68 30 chrX 47905678 47906271 -114693659 - L1M4 LINE L1 -3059 3087 2473 387 244 12 0 chrX 47906313 47906395 -114693535 - AluJb SINE Alu -175 127 45 1840 227 48 35 chrX 47906578 47907093 -114692837 - HERVL68-A1 LTR ERVL -680 2357 1836 703 302 58 61 chrX 47907098 47907344 -114692586 - HERVL68-A1 LTR ERVL -2262 775 530 1472 220 3 0 chrX 47907344 47907630 -114692300 - AluJo SINE Alu -25 287 1 703 302 58 61 chrX 47907630 47908069 -114691861 - HERVL68-A1 LTR ERVL -2507 530 9 301 209 116 0 chrX 47908630 47908716 -114691214 - L1M4 LINE L1 -1667 4479 4384 789 232 15 50 chrX 47908721 47908919 -114691011 + AluJo SINE Alu 2 192 -120 279 194 42 28 chrX 47908937 47909009 -114690921 + FRAM/FAM SINE Alu 18 90 -85 1847 201 131 16 chrX 47909098 47909513 -114690417 + MER21B LTR ERV1 1 554 -377 315 294 118 6 chrX 47909652 47909822 -114690108 + MIR SINE MIR 12 200 -62 263 317 30 12 chrX 47909931 47910098 -114689832 - MER113 DNA MER1_type? -341 180 11 230 312 96 55 chrX 47910299 47910517 -114689413 - REP3 LTR ERV -47 515 289 525 283 266 12 chrX 47910628 47911129 -114688801 - L2 LINE L2 -1535 1779 1152 2436 143 8 15 chrX 47911228 47911619 -114688311 - MLT1B LTR MaLR -2 388 1 1363 204 0 33 chrX 47911648 47911952 -114687978 - AluJo SINE Alu -18 294 1 877 199 14 1 chrX 47912213 47912395 -114687535 + L1 LINE L1 4797 4982 -1164 339 301 41 14 chrX 47912398 47912544 -114687386 + MER20B DNA MER1_type 342 491 -292 418 63 63 0 chrX 47912948 47913011 -114686919 - L1MA7 LINE L1 -7 6284 6218 279 241 139 15 chrX 47913033 47913170 -114686760 + L1ME4a LINE L1 5968 6121 0 324 98 39 0 chrX 47913282 47913333 -114686597 - MLT2A1 LTR ERVL -2 442 390 329 204 0 11 chrX 47913342 47913430 -114686500 + (TA)n Simple_repeat Simple_repeat 2 88 0 2956 86 10 5 chrX 47913430 47913824 -114686106 - MLT2A1 LTR ERVL -40 404 9 881 118 7 7 chrX 47914574 47914709 -114685221 - L1MA3 LINE L1 0 6305 6171 1983 129 13 26 chrX 47914737 47915047 -114684883 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 47915149 47915177 -114684753 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 47915213 47915233 -114684697 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 768 232 0 7 chrX 47915234 47915389 -114684541 + FRAM SINE Alu 12 165 -11 2781 197 20 2 chrX 47915630 47916167 -114683763 + L1 LINE L1 4784 5330 -816 838 146 7 21 chrX 47916168 47916312 -114683618 + AluJo SINE Alu 1 142 -170 925 301 14 7 chrX 47916312 47916598 -114683332 + L1MCc LINE L1 139 426 -5997 890 263 67 25 chrX 47916669 47916985 -114682945 - L1MA9 LINE L1 -30 6282 5954 498 109 30 20 chrX 47917025 47917126 -114682804 + CT-rich Low_complexity Low_complexity 4 105 0 310 148 37 0 chrX 47917138 47917192 -114682738 - L1MA9 LINE L1 -370 5942 5887 * 11659 33 11 0 chrX 47917184 47919233 -114680697 - L1PA4 LINE L1 -68 6087 4016 1028 179 56 0 chrX 47919233 47919428 -114680502 - MER110A LTR ERV1 -262 206 1 189 0 0 0 chrX 47919536 47919557 -114680373 + (TG)n Simple_repeat Simple_repeat 2 22 0 3137 122 19 33 chrX 47919568 47920084 -114679846 - L1MA5 LINE L1 -11 6289 5781 2180 130 60 0 chrX 47920118 47920486 -114679444 - L1MA4 LINE L1 -1 6299 5910 506 187 0 0 chrX 47920486 47920561 -114679369 - AluJ/FLAM SINE Alu -228 84 10 1817 144 3 27 chrX 47922541 47922840 -114677090 + AluSx SINE Alu 1 292 -20 196 333 95 27 chrX 47923057 47923204 -114676726 - MIR3 SINE MIR 0 208 52 2048 154 0 0 chrX 47924767 47925079 -114674851 - AluSx SINE Alu 0 312 1 1758 117 8 4 chrX 47926135 47926391 -114673539 + AluSq SINE Alu 34 290 -23 201 143 0 0 chrX 47926391 47926426 -114673504 + (CAAAC)n Simple_repeat Simple_repeat 5 39 0 229 114 45 0 chrX 47926508 47926552 -114673378 - MLT2A1 LTR ERVL 0 444 399 2049 183 41 26 chrX 47926652 47927190 -114672740 - MLT2A2 LTR ERVL -6 548 2 257 270 96 9 chrX 47928152 47928267 -114671663 - MER112 DNA MER1_type -12 248 124 2927 119 12 0 chrX 47929050 47929471 -114670459 - L1PA11 LINE L1 -1 6173 5748 358 226 158 0 chrX 47929638 47929784 -114670146 - L1M4 LINE L1 -1227 4919 4751 320 294 7 7 chrX 47929846 47929982 -114669948 + L2 LINE L2 1525 1660 -1654 327 279 174 18 chrX 47930188 47930407 -114669523 - L2 LINE L2 -1537 1777 1525 261 143 0 0 chrX 47930439 47930481 -114669449 + MER77 LTR ERV1 564 605 0 375 340 13 51 chrX 47930481 47930716 -114669214 + MER77-int LTR ERV1 5 230 -3961 * 947 280 59 58 chrX 47930550 47930971 -114668959 + HERVL68-D LTR ERVL 24 531 -2506 1506 212 4 0 chrX 47930971 47931249 -114668681 + AluJo SINE Alu 9 287 -25 947 280 59 58 chrX 47931249 47931478 -114668452 + HERVL68-D LTR ERVL 531 758 -2279 1551 253 58 31 chrX 47931496 47932013 -114667917 + HERVL68-D LTR ERVL 1836 2366 -671 926 178 16 70 chrX 47932122 47932364 -114667566 + AluJb SINE Alu 50 278 -34 2053 122 0 7 chrX 47932644 47932967 -114666963 + AluSp SINE Alu 6 313 0 2022 106 6 26 chrX 47934397 47934729 -114665201 + AluSq SINE Alu 9 334 0 2018 127 0 0 chrX 47935217 47935500 -114664430 - AluSx SINE Alu -19 293 11 2464 71 0 0 chrX 47936530 47936827 -114663103 - AluY SINE Alu -14 297 1 1208 204 27 44 chrX 47937892 47938186 -114661744 + AluJo SINE Alu 1 289 -13 1989 190 101 22 chrX 47938237 47938666 -114661264 + MER21B LTR ERV1 1 554 -377 267 347 48 0 chrX 47938828 47938975 -114660955 + MIR SINE MIR 47 200 -62 248 281 83 21 chrX 47939041 47939233 -114660697 - MER113 DNA MER1_type? -307 214 11 2049 228 35 25 chrX 47939648 47940213 -114659717 + HERVL68-D LTR ERVL 2323 2893 -144 1447 229 16 19 chrX 47940223 47940590 -114659340 + MLT2D LTR ERVL 1 366 -48 351 0 0 0 chrX 47940641 47940680 -114659250 + (CA)n Simple_repeat Simple_repeat 2 40 0 447 164 14 0 chrX 47940700 47940773 -114659157 + HERVL68 LTR ERVL 2899 2972 -65 930 215 62 5 chrX 47941709 47941918 -114658012 + AluJo SINE Alu 85 305 -7 364 314 15 44 chrX 47943168 47943372 -114656558 + MIR SINE MIR 65 262 0 22 0 0 0 chrX 47943732 47943754 -114656176 + AT_rich Low_complexity Low_complexity 1 22 0 2246 230 96 15 chrX 47943754 47944492 -114655438 - L1M4 LINE L1 -1007 5139 4342 486 326 48 24 chrX 47944562 47944896 -114655034 - L1M4 LINE L1 -2330 3816 3475 632 101 0 0 chrX 47946378 47946467 -114653463 - MLT2A2 LTR ERVL -363 90 2 640 49 0 0 chrX 47947438 47947520 -114652410 - L1PA2 LINE L1 0 6155 6074 4127 42 17 0 chrX 47948072 47948554 -114651376 + LTR2B LTR ERV1 1 490 0 2617 124 5 43 chrX 47948856 47949300 -114650630 - L1PA11 LINE L1 0 6174 5748 312 245 175 0 chrX 47949472 47949615 -114650315 - L1M4 LINE L1 -1228 4918 4751 240 345 7 0 chrX 47949673 47949812 -114650118 + L2 LINE L2 1521 1660 -1654 254 295 58 36 chrX 47950097 47950236 -114649694 - L2 LINE L2 -1648 1666 1525 264 143 0 0 chrX 47950268 47950310 -114649620 + MER77 LTR ERV1 564 605 0 758 329 32 44 chrX 47950362 47950804 -114649126 + HERVL68-D LTR ERVL 9 525 -2512 1473 199 11 3 chrX 47950804 47951090 -114648840 + AluJo SINE Alu 1 288 -24 758 329 32 44 chrX 47951090 47951322 -114648608 + HERVL68-D LTR ERVL 525 758 -2279 1463 231 62 45 chrX 47951334 47951862 -114648068 + HERVL68-D LTR ERVL 1830 2366 -671 880 246 0 25 chrX 47951983 47952223 -114647707 + AluJb SINE Alu 45 278 -34 507 96 0 0 chrX 47952363 47952446 -114647484 + (CA)n Simple_repeat Simple_repeat 2 84 0 3970 53 0 8 chrX 47952549 47953039 -114646891 + L1PA7 LINE L1 5669 6154 0 1258 243 3 13 chrX 47953052 47953356 -114646574 + AluJb SINE Alu 1 301 -1 2339 265 57 14 chrX 47954365 47955177 -114644753 - L1M4 LINE L1 -1022 5124 4278 635 273 58 68 chrX 47955179 47955560 -114644370 - L1M4 LINE L1 -2333 3813 3437 849 179 71 0 chrX 47955579 47955747 -114644183 - L1MA1 LINE L1 -5 6297 6118 279 71 0 0 chrX 47960174 47960216 -114639714 + (T)n Simple_repeat Simple_repeat 1 42 0 5678 152 10 16 chrX 47963675 47965252 -114634678 - L1MA2 LINE L1 -175 6129 4568 2387 267 67 29 chrX 47965254 47965589 -114634341 - L1M4 LINE L1 -2696 3450 3129 2144 123 10 0 chrX 47965589 47965898 -114634032 - AluSx SINE Alu 0 312 1 2387 267 67 29 chrX 47965898 47966735 -114633195 - L1M4 LINE L1 -3017 3129 2234 21 36 0 0 chrX 47966954 47966982 -114632948 + AT_rich Low_complexity Low_complexity 1 28 0 255 93 0 0 chrX 47967147 47967190 -114632740 + (A)n Simple_repeat Simple_repeat 1 43 0 515 216 6 0 chrX 47967505 47967667 -114632263 + CT-rich Low_complexity Low_complexity 3 165 0 4369 121 13 13 chrX 47967734 47968421 -114631509 - L1PA13 LINE L1 -2 6161 5475 945 269 16 41 chrX 47968474 47968839 -114631091 - L1MCc LINE L1 -6051 372 17 253 322 23 0 chrX 47968908 47968995 -114630935 + MER58 DNA MER1_type 1 89 -2331 1176 178 7 48 chrX 47969593 47969862 -114630068 + AluJo SINE Alu 45 302 -10 2330 72 10 3 chrX 47970438 47970731 -114629199 - AluSc SINE Alu -14 295 1 21 0 0 0 chrX 47971824 47971845 -114628085 + AT_rich Low_complexity Low_complexity 1 21 0 648 227 60 0 chrX 47972890 47973040 -114626890 - AluSg/x SINE Alu -18 292 134 813 233 4 40 chrX 47976028 47976256 -114623674 + AluJo SINE Alu 3 222 -90 25 0 0 0 chrX 47976285 47976310 -114623620 + AT_rich Low_complexity Low_complexity 1 25 0 1676 223 105 25 chrX 47976359 47976767 -114623163 + MER21B LTR ERV1 1 441 -422 380 300 65 10 chrX 47977167 47977367 -114622563 - MER113 DNA MER1_type? -297 224 14 1624 146 8 4 chrX 47977426 47977680 -114622250 + AluSq SINE Alu 52 306 -7 309 242 23 8 chrX 47977680 47977808 -114622122 + GA-rich Low_complexity Low_complexity 1 130 0 286 308 39 0 chrX 47978569 47978673 -114621257 + MIR SINE MIR 82 189 -73 3472 219 37 1 chrX 47980058 47980788 -114619142 - MLT1C-int LTR MaLR -615 756 1 2658 162 0 9 chrX 47980794 47981060 -114618870 - MLT1C LTR MaLR -6 461 199 2355 161 4 62 chrX 47981060 47981478 -114618452 - MSTB2 LTR MaLR -1 456 68 2030 136 0 31 chrX 47981478 47981795 -114618135 - AluSx SINE Alu -3 309 3 2355 161 4 62 chrX 47981795 47981860 -114618070 - MSTB2 LTR MaLR -389 68 1 2658 162 0 9 chrX 47981860 47982032 -114617898 - MLT1C LTR MaLR -268 199 27 186 43 0 0 chrX 47982265 47982288 -114617642 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1192 214 7 31 chrX 47983164 47983458 -114616472 + AluJo SINE Alu 1 287 -15 2123 184 10 8 chrX 47983491 47983878 -114616052 + MLT1B LTR MaLR 1 388 -2 207 308 51 13 chrX 47983978 47984056 -114615874 + L2 LINE L2 1153 1233 -2081 292 296 159 13 chrX 47984260 47984486 -114615444 + L2 LINE L2 1525 1783 -1531 520 263 136 8 chrX 47984515 47984751 -114615179 + L1M4 LINE L1 4640 4905 -1241 703 331 67 26 chrX 47985117 47985609 -114614321 + REP3 LTR ERV 3 514 -48 380 300 65 10 chrX 47985829 47986029 -114613901 + MER113 DNA MER1_type? 14 224 -297 1175 228 140 25 chrX 47986429 47986785 -114613145 - MER21B LTR ERV1 -422 441 45 570 154 103 3 chrX 48186785 48186958 -114412972 - AluJo SINE Alu -75 237 1 22 0 0 0 chrX 48187200 48187222 -114412708 + AT_rich Low_complexity Low_complexity 1 22 0 1971 130 47 7 chrX 48187347 48187647 -114412283 - AluJb SINE Alu 0 312 1 741 214 0 0 chrX 48187647 48187773 -114412157 - FLAM_A SINE Alu -6 127 2 21 0 0 0 chrX 48187781 48187802 -114412128 + AT_rich Low_complexity Low_complexity 1 21 0 780 167 14 36 chrX 48187905 48188043 -114411887 - AluJo SINE Alu -176 136 2 625 200 9 17 chrX 48188281 48188396 -114411534 - AluJo/FRAM SINE Alu -23 289 176 1866 98 4 8 chrX 48188397 48188642 -114411288 - AluY SINE Alu -67 244 1 1278 190 148 8 chrX 48188661 48188924 -114411006 - AluJo SINE Alu -12 300 1 22 0 0 0 chrX 48188932 48188954 -114410976 + AT_rich Low_complexity Low_complexity 1 22 0 2543 73 0 6 chrX 48188956 48189269 -114410661 + AluY SINE Alu 1 311 0 2446 90 0 0 chrX 48189639 48189949 -114409981 - AluSq SINE Alu -3 310 1 2960 161 59 2 chrX 48190967 48191445 -114408485 + MLT1D LTR MaLR 1 505 0 470 270 43 9 chrX 48191461 48191576 -114408354 - L2 LINE L2 0 3272 3154 600 153 27 0 chrX 48191723 48191834 -114408096 - L1MD3 LINE L1 0 7995 7882 894 137 0 0 chrX 48191837 48191968 -114407962 - FLAM_C SINE Alu -12 131 1 2099 169 39 5 chrX 48191994 48192403 -114407527 - L1MC4a LINE L1 -343 7465 7043 255 283 98 0 chrX 48192582 48192674 -114407256 - MIR SINE MIR -71 191 91 2327 83 0 71 chrX 48193332 48193668 -114406262 - AluSx SINE Alu 0 312 1 205 361 66 16 chrX 48193917 48194039 -114405891 + MIR3 SINE MIR 3 130 -78 2241 116 0 0 chrX 48194149 48194451 -114405479 + AluSx SINE Alu 1 302 -10 1268 172 0 56 chrX 48194556 48194824 -114405106 + AluJo SINE Alu 44 296 -16 2117 138 0 0 chrX 48195883 48196174 -114403756 + AluJb SINE Alu 1 291 -21 2211 108 3 3 chrX 48196268 48196565 -114403365 + AluSx SINE Alu 1 297 -15 1543 148 121 0 chrX 48196636 48196893 -114403037 - AluJo SINE Alu -21 291 4 4158 132 44 75 chrX 48196920 48196972 -114402958 - L1MB4 LINE L1 0 6180 6128 2183 114 0 3 chrX 48196972 48197269 -114402661 - AluSx SINE Alu -16 296 1 4158 132 44 75 chrX 48197269 48197414 -114402516 - L1MB4 LINE L1 -52 6128 5980 2504 66 0 3 chrX 48197414 48197717 -114402213 + AluY SINE Alu 1 302 -9 4158 132 44 75 chrX 48197717 48197887 -114402043 - L1MB4 LINE L1 -200 5980 5806 2374 90 0 3 chrX 48197887 48198187 -114401743 + AluSg SINE Alu 1 299 -11 4158 132 44 75 chrX 48198187 48198546 -114401384 - L1MB4 LINE L1 -374 5806 5477 225 65 0 0 chrX 48198546 48198577 -114401353 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4158 132 44 75 chrX 48198577 48198663 -114401267 - L1MB4 LINE L1 -703 5477 5390 601 218 222 51 chrX 48198663 48198779 -114401151 - MLT1B LTR MaLR -68 322 227 2319 103 0 3 chrX 48198779 48199089 -114400841 - AluSx SINE Alu -3 309 1 601 218 222 51 chrX 48199089 48199247 -114400683 - MLT1B LTR MaLR -163 227 1 1849 168 0 23 chrX 48200023 48200332 -114399598 - AluJb SINE Alu -10 302 1 1811 163 0 46 chrX 48200553 48200859 -114399071 - AluJb SINE Alu -20 292 1 2300 115 0 3 chrX 48201123 48201436 -114398494 - AluSx SINE Alu 0 312 1 2400 68 7 0 chrX 48201697 48201991 -114397939 + AluSp SINE Alu 2 297 -16 499 321 19 52 chrX 48202145 48202453 -114397477 + L1M4 LINE L1 2805 3102 -3044 27 73 0 0 chrX 48202477 48202532 -114397398 + AT_rich Low_complexity Low_complexity 1 55 0 2206 119 0 10 chrX 48202605 48202915 -114397015 + AluSx SINE Alu 1 307 -5 1691 159 10 30 chrX 48203013 48203308 -114396622 - AluJb SINE Alu -23 289 1 483 307 62 28 chrX 48203342 48203765 -114396165 - HAL1b LINE L1 -759 589 293 1787 142 60 7 chrX 48204331 48204612 -114395318 + AluJb SINE Alu 1 296 -16 1757 158 0 34 chrX 48204760 48205087 -114394843 - AluJb SINE Alu 0 317 1 198 89 107 0 chrX 48205166 48205222 -114394708 + (TATAG)n Simple_repeat Simple_repeat 3 64 0 2005 138 3 0 chrX 48205514 48205804 -114394126 + AluSx SINE Alu 1 291 -21 1156 208 5 18 chrX 48206316 48206537 -114393393 + MER58A DNA MER1_type 1 218 -6 2387 81 0 0 chrX 48206856 48207152 -114392778 + AluSg SINE Alu 1 296 -14 2332 69 24 0 chrX 48208110 48208398 -114391532 - AluSc SINE Alu -14 295 1 4955 140 35 18 chrX 48208410 48209241 -114390689 - L1MA7 LINE L1 -4 6287 5443 2217 104 0 3 chrX 48209273 48209572 -114390358 - AluSg SINE Alu -12 298 1 458 230 122 14 chrX 48209581 48209729 -114390201 - MIR SINE MIR -74 188 25 1396 201 60 66 chrX 48209756 48209872 -114390058 + L1MC5 LINE L1 7412 7527 -434 2282 170 25 37 chrX 48209872 48210161 -114389769 + MER63B DNA MER1_type 2 287 -775 1973 125 0 47 chrX 48210161 48210491 -114389439 - AluSx SINE Alu 0 316 1 2282 170 25 37 chrX 48210491 48210636 -114389294 + MER63B DNA MER1_type 287 432 -4 1396 201 60 66 chrX 48210636 48210790 -114389140 + L1MC5 LINE L1 7527 7680 -281 1732 167 3 36 chrX 48210790 48211095 -114388835 - AluJb SINE Alu -14 298 4 1396 201 60 66 chrX 48211095 48211326 -114388604 + L1MC5 LINE L1 7680 7911 -50 51 31 0 0 chrX 48211554 48211619 -114388311 + AT_rich Low_complexity Low_complexity 1 65 0 213 224 0 0 chrX 48212154 48212212 -114387718 + (TA)n Simple_repeat Simple_repeat 2 59 0 2075 134 0 29 chrX 48212274 48212587 -114387343 + AluJo SINE Alu 1 304 -8 243 0 0 0 chrX 48212587 48212614 -114387316 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 297 0 0 0 chrX 48212613 48212646 -114387284 + (GA)n Simple_repeat Simple_repeat 2 34 0 2313 92 0 10 chrX 48212745 48213050 -114386880 + AluSx SINE Alu 1 302 -10 421 209 52 9 chrX 48213070 48213185 -114386745 - L1ME4a LINE L1 -199 5922 5803 2338 112 0 6 chrX 48214071 48214385 -114385545 - AluSx SINE Alu 0 312 1 604 121 48 38 chrX 48214442 48214610 -114385320 - L1MA7 LINE L1 -752 5431 5276 272 284 91 0 chrX 48214752 48214840 -114385090 + MIR SINE MIR 7 102 -160 1757 174 0 24 chrX 48214886 48215184 -114384746 + AluJo SINE Alu 1 291 -21 2126 119 0 0 chrX 48215186 48215505 -114384425 + AluSx SINE Alu 1 319 0 1694 102 164 4 chrX 48215640 48215896 -114384034 + AluSc SINE Alu 1 297 -12 2389 81 0 0 chrX 48217257 48217554 -114382376 - AluY SINE Alu -14 297 1 2199 114 0 7 chrX 48217755 48218053 -114381877 - AluSx SINE Alu -16 296 1 459 299 22 0 chrX 48218710 48218847 -114381083 - HAL1 LINE L1 -625 1882 1743 419 214 20 10 chrX 48218860 48218958 -114380972 - MLT1E2 LTR MaLR -279 347 249 1894 157 3 10 chrX 48219356 48219661 -114380269 + AluJo SINE Alu 1 303 -9 231 278 174 17 chrX 48219756 48219871 -114380059 + L2 LINE L2 3134 3266 -6 2316 78 7 7 chrX 48220150 48220445 -114379485 + AluSg SINE Alu 1 295 -15 2072 127 0 17 chrX 48221152 48221451 -114378479 - AluJb SINE Alu -18 294 1 21 0 0 0 chrX 48222225 48222246 -114377684 + AT_rich Low_complexity Low_complexity 1 21 0 2464 82 0 3 chrX 48222617 48222923 -114377007 - AluSp SINE Alu -8 305 1 229 281 109 0 chrX 48223556 48223620 -114376310 - L2 LINE L2 -61 3211 3141 2306 64 0 0 chrX 48223990 48224314 -114375616 - AluY SINE Alu 0 324 1 2250 116 0 3 chrX 48225050 48225353 -114374577 - AluSx SINE Alu -10 302 1 337 273 173 0 chrX 48227557 48227667 -114372263 + MIR3 SINE MIR 34 162 -46 890 254 134 32 chrX 48227695 48228037 -114371893 - L2 LINE L2 -61 3252 2876 582 235 171 0 chrX 48228130 48228300 -114371630 - MIR SINE MIR -16 246 48 2156 128 0 0 chrX 48228418 48228715 -114371215 - AluSx SINE Alu -15 297 1 272 275 28 76 chrX 48229267 48229478 -114370452 - L1MC4 LINE L1 -1 8041 7841 3741 179 85 41 chrX 48229519 48229612 -114370318 - L1ME2 LINE L1 -19 6145 6058 1278 203 14 5 chrX 48229612 48229829 -114370101 - MER58A DNA MER1_type -1 223 5 3741 179 85 41 chrX 48229829 48229923 -114370007 - L1ME2 LINE L1 -106 6058 5970 1745 178 3 3 chrX 48229923 48230221 -114369709 - AluJo SINE Alu -14 298 1 3741 179 85 41 chrX 48230221 48230358 -114369572 - L1ME2 LINE L1 -194 5970 5841 2296 94 7 0 chrX 48230358 48230657 -114369273 - AluSp SINE Alu -12 301 1 3741 179 85 41 chrX 48230657 48231533 -114368397 - L1ME2 LINE L1 -323 5841 4885 1159 139 0 56 chrX 48231525 48231556 -114368374 - L1M4 LINE L1 -656 5518 5487 * 2616 50 7 0 chrX 48231556 48231858 -114368072 - AluY SINE Alu -7 304 1 1159 139 0 56 chrX 48231858 48232041 -114367889 - L1M4 LINE L1 -687 5487 5316 893 168 0 0 chrX 48232041 48232184 -114367746 - FLAM_C SINE Alu 0 143 1 2633 174 18 12 chrX 48232184 48232913 -114367017 - L1M4 LINE L1 -814 5332 4484 * 4188 112 61 79 chrX 48232911 48233001 -114366929 + L1MA9 LINE L1 5494 5584 -728 1961 141 3 20 chrX 48233001 48233306 -114366624 + AluJb SINE Alu 1 300 -12 4188 112 61 79 chrX 48233306 48233853 -114366077 + L1MA9 LINE L1 5584 6115 -197 2106 131 3 0 chrX 48233853 48234143 -114365787 - AluSx SINE Alu -21 291 1 4188 112 61 79 chrX 48234143 48234338 -114365592 + L1MA9 LINE L1 6115 6312 0 1631 185 56 33 chrX 48234354 48234389 -114365541 - L1M4 LINE L1 -1667 4479 4446 2526 136 0 8 chrX 48234389 48234764 -114365166 - L1PA16 LINE L1 0 6166 5795 1631 185 56 33 chrX 48234764 48235035 -114364895 - L1M4 LINE L1 -1700 4446 4157 2230 98 0 3 chrX 48235035 48235330 -114364600 - AluSg SINE Alu -16 294 1 1631 185 56 33 chrX 48235330 48235471 -114364459 - L1M4 LINE L1 -1989 4157 4021 472 221 154 0 chrX 48235492 48235628 -114364302 - L1ME1 LINE L1 -5 6161 6005 1171 202 5 0 chrX 48235762 48235980 -114363950 - AluJb SINE Alu -10 302 84 3224 230 28 71 chrX 48236081 48236235 -114363695 - L1M4 LINE L1 -972 5568 5409 2279 82 11 0 chrX 48236235 48236557 -114363373 - AluSq SINE Alu 0 325 1 3224 230 28 71 chrX 48236557 48237234 -114362696 - L1M4 LINE L1 -1131 5409 4704 1978 156 0 3 chrX 48237234 48237535 -114362395 - AluJb SINE Alu -12 300 1 3224 230 28 71 chrX 48237535 48237710 -114362220 - L1M4 LINE L1 -1836 4704 4523 2528 72 0 0 chrX 48237710 48238014 -114361916 + AluSc SINE Alu 1 304 -5 3224 230 28 71 chrX 48238014 48238329 -114361601 - L1M4 LINE L1 -2017 4523 4337 2242 104 0 7 chrX 48238329 48238628 -114361302 + AluSx SINE Alu 1 297 -15 3224 230 28 71 chrX 48238628 48238898 -114361032 - L1M4 LINE L1 -2203 4337 4057 1195 216 56 73 chrX 48238867 48238984 -114360946 - L1MDa LINE L1 -3526 3014 2897 * 2333 99 16 0 chrX 48238984 48239288 -114360642 - AluSx SINE Alu -3 309 1 1195 216 56 73 chrX 48239288 48239870 -114360060 - L1MDa LINE L1 -3643 2897 2325 519 17 0 0 chrX 48239870 48239930 -114360000 + (CA)n Simple_repeat Simple_repeat 1 60 0 1195 216 56 73 chrX 48239930 48240020 -114359910 - L1MDa LINE L1 -4215 2325 2235 2203 100 0 3 chrX 48240022 48240313 -114359617 - AluSx SINE Alu -22 290 1 1815 164 3 20 chrX 48240313 48240612 -114359318 - AluJo SINE Alu -8 304 11 374 175 126 10 chrX 48240619 48240722 -114359208 - L1MC4 LINE L1 -1116 6926 6812 1548 229 88 26 chrX 48240722 48241176 -114358754 - L2 LINE L2 -1600 1714 1233 752 103 0 9 chrX 48241786 48241893 -114358037 - AluSx SINE Alu -13 297 192 1140 92 0 0 chrX 48241893 48242035 -114357895 - AluSx SINE Alu -170 142 1 189 147 0 0 chrX 48242839 48242873 -114357057 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 837 153 51 0 chrX 48242879 48243016 -114356914 - FRAM SINE Alu -4 172 29 195 222 0 0 chrX 48243059 48243095 -114356835 - L2 LINE L2 -17 3255 3220 607 329 82 31 chrX 48243704 48244154 -114355776 - HAL1b LINE L1 -542 806 334 21 0 0 0 chrX 48244165 48244186 -114355744 + AT_rich Low_complexity Low_complexity 1 21 0 2283 88 3 44 chrX 48244267 48244413 -114355517 + AluSq SINE Alu 1 151 -162 2907 47 14 0 chrX 48244413 48244775 -114355155 + L1PA8 LINE L1 5805 6171 -1 2283 88 3 44 chrX 48244775 48244946 -114354984 + AluSq SINE Alu 151 305 -8 2009 113 28 0 chrX 48244948 48245239 -114354691 + AluSp SINE Alu 1 299 -14 391 228 118 0 chrX 48245439 48245566 -114354364 - L1ME3 LINE L1 0 6162 6021 2031 223 41 7 chrX 48245569 48246107 -114353823 - L1ME3 LINE L1 -303 5859 5304 1703 173 79 64 chrX 48246095 48246845 -114353085 - L1MC4 LINE L1 -417 7625 6813 * 1486 153 0 46 chrX 48246845 48247106 -114352824 - AluJo SINE Alu -23 289 41 1703 173 79 64 chrX 48247106 48247218 -114352712 - L1MC4 LINE L1 -1229 6813 6704 423 0 0 0 chrX 48247218 48247265 -114352665 + (TG)n Simple_repeat Simple_repeat 1 47 0 718 241 23 78 chrX 48247340 48247522 -114352408 + L2 LINE L2 2281 2447 -867 2209 104 6 31 chrX 48247522 48247840 -114352090 - AluSx SINE Alu 0 312 3 718 241 23 78 chrX 48247840 48247914 -114352016 + L2 LINE L2 2447 2523 -791 365 73 0 0 chrX 48247921 48247976 -114351954 - L1MA3 LINE L1 -5 6300 6246 834 133 7 7 chrX 48247977 48248112 -114351818 + AluJb SINE Alu 1 135 -177 1349 60 0 0 chrX 48248112 48248294 -114351636 - L1PA8 LINE L1 -352 5820 5639 2578 44 3 0 chrX 48248294 48248611 -114351319 + L1PA8 LINE L1 5845 6163 -9 25 0 0 0 chrX 48248611 48248636 -114351294 + AT_rich Low_complexity Low_complexity 1 25 0 1040 198 0 0 chrX 48248636 48248803 -114351127 + AluJb SINE Alu 129 295 -17 2585 93 65 16 chrX 48248803 48249252 -114350678 - L1MA3 LINE L1 -50 6255 5785 823 284 57 25 chrX 48249257 48249335 -114350595 + L2 LINE L2 2516 2590 -724 1394 124 169 8 chrX 48249335 48249584 -114350346 - AluSg1 SINE Alu -20 289 1 823 284 57 25 chrX 48249584 48249822 -114350108 + L2 LINE L2 2590 2842 -472 2199 114 0 3 chrX 48249843 48250142 -114349788 - AluSx SINE Alu -14 298 1 1470 154 86 39 chrX 48250880 48251003 -114348927 + AluJb SINE Alu 1 117 -195 2155 110 10 0 chrX 48251003 48251294 -114348636 - AluSx SINE Alu -18 294 1 1470 154 86 39 chrX 48251294 48251449 -114348481 + AluJb SINE Alu 117 292 -20 22 0 0 0 chrX 48251559 48251581 -114348349 + AT_rich Low_complexity Low_complexity 1 22 0 283 330 60 0 chrX 48251648 48251748 -114348182 + MIR SINE MIR 38 143 -119 228 295 158 0 chrX 48251924 48252019 -114347911 + MIR SINE MIR 151 260 -2 183 300 17 17 chrX 48252115 48252175 -114347755 + MER5B DNA MER1_type 69 128 -50 1892 135 76 0 chrX 48252387 48252676 -114347254 - AluSp SINE Alu -2 311 1 288 250 60 36 chrX 48252709 48252793 -114347137 + L2 LINE L2 3214 3299 -14 347 238 94 116 chrX 48252839 48253159 -114346771 + L1ME4a LINE L1 5596 5908 -213 22 70 0 0 chrX 48253262 48253305 -114346625 + AT_rich Low_complexity Low_complexity 1 43 0 836 252 84 26 chrX 48253321 48253631 -114346299 + L1ME4a LINE L1 5505 5832 -289 183 42 0 0 chrX 48253698 48253722 -114346208 + (TG)n Simple_repeat Simple_repeat 2 25 0 611 257 26 7 chrX 48253897 48254049 -114345881 + MER8 DNA MER2_type 1 155 -84 858 189 78 0 chrX 48254065 48254218 -114345712 - FRAM SINE Alu -10 166 2 2233 103 3 25 chrX 48254316 48254635 -114345295 + AluSx SINE Alu 1 312 0 188 281 88 94 chrX 48255261 48255421 -114344509 - L2 LINE L2 -469 2845 2687 949 185 17 62 chrX 48256457 48256712 -114343218 - L1MDb LINE L1 -5102 1307 1065 2079 145 0 0 chrX 48256712 48257009 -114342921 + AluSx SINE Alu 1 297 -15 949 185 17 62 chrX 48257009 48257045 -114342885 - L1MDb LINE L1 -5344 1065 1029 2407 95 0 0 chrX 48257045 48257350 -114342580 - AluSx SINE Alu -7 305 1 1205 204 62 57 chrX 48257357 48257529 -114342401 - L1MDb LINE L1 -5344 1065 895 2314 109 16 0 chrX 48257529 48257833 -114342097 - AluSx SINE Alu -3 309 1 1205 204 62 57 chrX 48257833 48258048 -114341882 - L1MDb LINE L1 -5514 895 676 767 307 12 4 chrX 48258155 48258406 -114341524 - L1MDb LINE L1 -6136 273 21 684 101 0 18 chrX 48259226 48259335 -114340595 - L1MB8 LINE L1 -1 6177 6071 279 288 152 0 chrX 48259749 48259881 -114340049 - L1ME4a LINE L1 -19 6102 5951 651 268 47 71 chrX 48259926 48260066 -114339864 - MIR SINE MIR -10 252 119 2343 99 0 0 chrX 48260066 48260358 -114339572 + AluSp SINE Alu 1 292 -21 651 268 47 71 chrX 48260358 48260471 -114339459 - MIR SINE MIR -143 119 5 240 216 59 49 chrX 48260494 48260596 -114339334 - L1ME4a LINE L1 -215 5906 5804 229 263 12 0 chrX 48260651 48260731 -114339199 + CT-rich Low_complexity Low_complexity 3 83 0 557 266 29 6 chrX 48260731 48260904 -114339026 - L1ME4a LINE L1 -415 5706 5530 196 276 20 82 chrX 48261535 48261615 -114338315 + MIR3 SINE MIR 96 169 -39 579 273 42 7 chrX 48261615 48261758 -114338172 + MER5B DNA MER1_type 2 149 -29 1905 141 10 14 chrX 48261780 48262070 -114337860 + AluJo SINE Alu 2 290 -22 24 0 0 0 chrX 48262076 48262100 -114337830 + AT_rich Low_complexity Low_complexity 1 24 0 660 154 0 0 chrX 48262154 48262271 -114337659 - L1MA3 LINE L1 0 6305 6189 28 0 0 0 chrX 48262381 48262409 -114337521 + AT_rich Low_complexity Low_complexity 1 28 0 2128 108 49 0 chrX 48262658 48262944 -114336986 - AluSx SINE Alu -12 300 1 2421 109 3 0 chrX 48263250 48263562 -114336368 - AluSq SINE Alu 0 313 1 323 299 0 0 chrX 48264812 48264909 -114335021 - L1ME1 LINE L1 -24 6142 6046 2108 70 56 21 chrX 48267100 48267384 -114332546 - AluSg SINE Alu -16 294 1 231 246 0 0 chrX 48267555 48267620 -114332310 - L1ME1 LINE L1 -1902 5906 5842 290 220 10 20 chrX 48267775 48267875 -114332055 + (TA)n Simple_repeat Simple_repeat 1 99 0 249 181 162 57 chrX 48267876 48267981 -114331949 - L1ME1 LINE L1 -1903 5905 5790 44 20 0 0 chrX 48267985 48268036 -114331894 + AT_rich Low_complexity Low_complexity 1 51 0 400 246 112 0 chrX 48268288 48268467 -114331463 - HAL1 LINE L1 -856 1634 1436 1067 151 38 5 chrX 48268488 48268674 -114331256 + MER3 DNA MER1_type 18 209 0 378 319 94 56 chrX 48268720 48269134 -114330796 - L1MEd LINE L1 -1110 1380 859 631 294 81 40 chrX 48269152 48269647 -114330283 + L1MC/D LINE L1 5243 5758 -747 360 111 0 0 chrX 48269801 48269855 -114330075 + (TG)n Simple_repeat Simple_repeat 2 55 0 1813 185 0 0 chrX 48269855 48270141 -114329789 - AluJo SINE Alu -26 286 1 384 22 0 0 chrX 48270158 48270203 -114329727 + (CA)n Simple_repeat Simple_repeat 2 46 0 3285 78 22 19 chrX 48270353 48270817 -114329113 - MER4C LTR ERV1 0 465 1 462 289 59 20 chrX 48270873 48271025 -114328905 + MIR SINE MIR 20 177 -85 3878 213 91 21 chrX 48271122 48271898 -114328032 - L1MB5 LINE L1 -36 6138 5418 2466 54 0 19 chrX 48271898 48272212 -114327718 - AluY SINE Alu -3 308 1 3878 213 91 21 chrX 48272212 48272233 -114327697 - L1MB5 LINE L1 -756 5418 5400 816 148 0 15 chrX 48272233 48272368 -114327562 + FLAM_C SINE Alu 1 133 0 3878 213 91 21 chrX 48272368 48273369 -114326561 - L1MB5 LINE L1 -774 5400 4162 2291 118 0 0 chrX 48273377 48273674 -114326256 - AluSx SINE Alu -15 297 1 244 250 89 0 chrX 48274381 48274437 -114325493 - L2 LINE L2 -71 3242 3182 2276 91 7 3 chrX 48275016 48275323 -114324607 - AluSq SINE Alu -5 308 1 441 0 0 0 chrX 48276188 48276237 -114323693 + (TTTTG)n Simple_repeat Simple_repeat 5 53 0 2371 92 3 3 chrX 48277092 48277396 -114322534 - AluSq SINE Alu -9 304 1 1976 124 0 48 chrX 48278923 48279237 -114320693 + AluSx SINE Alu 1 299 -13 427 242 227 33 chrX 48279272 48279603 -114320327 - L1MC4a LINE L1 -1666 6142 5748 2406 83 0 3 chrX 48279759 48280059 -114319871 + AluSx SINE Alu 1 299 -13 2438 86 0 0 chrX 48280497 48280801 -114319129 - AluY SINE Alu -7 304 1 1662 187 10 3 chrX 48280965 48281254 -114318676 - AluJo SINE Alu -21 291 1 1741 157 7 21 chrX 48281322 48281652 -114318278 - AluJo SINE Alu 0 327 2 303 161 0 0 chrX 48281833 48281889 -114318041 + CT-rich Low_complexity Low_complexity 3 58 0 1789 166 6 41 chrX 48281889 48282203 -114317727 - AluJo SINE Alu -9 303 1 2187 112 0 0 chrX 48282904 48283190 -114316740 + AluSq SINE Alu 1 286 -27 420 181 0 0 chrX 48283190 48283273 -114316657 + (CATA)n Simple_repeat Simple_repeat 3 85 0 2124 183 37 45 chrX 48283532 48284041 -114315889 + MLT1D LTR MaLR 1 505 0 1779 208 34 38 chrX 48284533 48285009 -114314921 - L1ME LINE L1 -379 5787 5314 465 126 63 72 chrX 48285023 48285134 -114314796 - L1MD1 LINE L1 -1 6241 6132 3750 217 50 16 chrX 48285152 48285981 -114313949 - L1ME LINE L1 -830 5316 4437 724 67 39 0 chrX 48285981 48286085 -114313845 - L1PA15 LINE L1 -4 6161 6054 3750 217 50 16 chrX 48286085 48286407 -114313523 - L1ME LINE L1 -1709 4437 4127 463 204 48 0 chrX 48286412 48286515 -114313415 - L1ME LINE L1 -2051 4095 3988 225 164 55 0 chrX 48286578 48286633 -114313297 - L1 LINE L1 -2467 3679 3622 1404 179 77 61 chrX 48286665 48287056 -114312874 - L1MB7 LINE L1 0 6184 5788 2806 157 18 54 chrX 48287064 48287202 -114312728 - L1MB8 LINE L1 -118 6060 5919 1650 115 50 0 chrX 48287202 48287472 -114312458 + AluJb SINE Alu 38 285 -27 2806 157 18 54 chrX 48287472 48287891 -114312039 - L1MB8 LINE L1 -259 5919 5522 991 204 17 26 chrX 48287891 48288179 -114311751 + L1MB8 LINE L1 5282 5490 -688 2802 157 22 147 chrX 48288219 48288476 -114311454 - L1MB8 LINE L1 -906 5240 4952 2360 87 7 0 chrX 48288476 48288786 -114311144 - AluSx SINE Alu 0 312 1 2802 157 22 147 chrX 48288786 48288846 -114311084 - L1MB8 LINE L1 -1194 4952 4886 2411 103 0 0 chrX 48288846 48289158 -114310772 - AluSx SINE Alu 0 312 1 2802 157 22 147 chrX 48289158 48289696 -114310234 - L1MB8 LINE L1 -1260 4886 4504 2304 122 0 0 chrX 48289696 48290007 -114309923 - AluSx SINE Alu -1 311 1 2802 157 22 147 chrX 48290007 48290065 -114309865 - L1MB8 LINE L1 -1642 4504 4440 1260 158 0 36 chrX 48290067 48290314 -114309616 - AluJo SINE Alu 0 310 72 988 192 77 35 chrX 48290323 48290477 -114309453 - L1MB8 LINE L1 -3453 2693 2522 2544 57 0 0 chrX 48290477 48290778 -114309152 + AluY SINE Alu 1 301 -10 988 192 77 35 chrX 48290778 48290883 -114309047 - L1MB8 LINE L1 -3624 2522 2423 2351 84 7 0 chrX 48290978 48291274 -114308656 - AluSp SINE Alu -15 298 1 923 225 56 107 chrX 48292048 48292405 -114307525 - L1MEc LINE L1 -3798 3159 2786 225 0 0 0 chrX 48292405 48292430 -114307500 + (TA)n Simple_repeat Simple_repeat 2 26 0 923 225 56 107 chrX 48292430 48292458 -114307472 - L1MEc LINE L1 -4171 2786 2758 2160 130 3 0 chrX 48292458 48292751 -114307179 - AluSx SINE Alu -18 294 1 923 225 56 107 chrX 48292751 48292764 -114307166 - L1MEc LINE L1 -4199 2758 2746 1660 173 19 42 chrX 48292764 48293076 -114306854 - AluJo SINE Alu -7 305 1 923 225 56 107 chrX 48293076 48293161 -114306769 - L1MEc LINE L1 -4211 2746 2658 2336 113 0 0 chrX 48293161 48293471 -114306459 - AluSq SINE Alu -3 310 1 2192 94 6 31 chrX 48293474 48293794 -114306136 - AluSx SINE Alu 0 312 1 923 225 56 107 chrX 48293794 48294219 -114305711 - L1MEc LINE L1 -4301 2656 2369 1761 149 11 0 chrX 48294781 48295049 -114304881 - AluJo SINE Alu -16 296 26 2289 73 43 7 chrX 48295646 48295948 -114303982 - AluSq SINE Alu 0 313 1 1536 248 53 2 chrX 48295951 48296406 -114303524 - L1MEc LINE L1 -4728 2231 1754 2167 110 3 0 chrX 48296453 48296743 -114303187 - AluSx SINE Alu -21 291 1 2035 216 88 111 chrX 48296758 48297029 -114302901 - L1MEc LINE L1 -5061 1794 1518 1511 164 17 13 chrX 48297029 48297267 -114302663 + MER8 DNA MER2_type 1 239 0 2035 216 88 111 chrX 48297267 48297588 -114302342 - L1MEc LINE L1 -5337 1518 1191 1480 143 4 86 chrX 48297588 48297710 -114302220 - AluJo SINE Alu -56 256 126 1977 107 28 17 chrX 48297710 48297999 -114301931 - AluSc SINE Alu -17 292 1 1480 143 4 86 chrX 48297999 48298010 -114301920 - AluJo SINE Alu -186 126 116 2441 67 10 0 chrX 48298010 48298308 -114301622 - AluY SINE Alu -10 301 1 1480 143 4 86 chrX 48298308 48298452 -114301478 - AluJo SINE Alu -196 116 1 2035 216 88 111 chrX 48298452 48298878 -114301052 - L1MEc LINE L1 -5664 1191 798 198 0 0 0 chrX 48299031 48299053 -114300877 + (TA)n Simple_repeat Simple_repeat 2 23 0 5069 71 25 10 chrX 48299060 48300163 -114299767 - SVA Other Other -955 1369 19 1263 80 0 0 chrX 48300206 48300368 -114299562 - AluY SINE Alu -7 304 143 2093 53 0 4 chrX 48300368 48300615 -114299315 - AluY SINE Alu -65 246 1 332 309 142 51 chrX 48300615 48300910 -114299020 - L1MEc LINE L1 -6207 648 327 1087 218 67 65 chrX 48300925 48301063 -114298867 - L1M4 LINE L1 -2528 3618 3482 2183 98 0 20 chrX 48301063 48301360 -114298570 + AluSx SINE Alu 1 291 -21 1087 218 67 65 chrX 48301360 48301757 -114298173 - L1M4 LINE L1 -2664 3482 3082 2293 86 0 3 chrX 48301763 48302065 -114297865 - AluSg SINE Alu -1 309 9 1542 153 0 41 chrX 48302097 48302365 -114297565 + AluJb SINE Alu 38 294 -18 3088 172 63 26 chrX 48302365 48302990 -114296940 - L1MC4a LINE L1 -1087 6698 6086 424 221 33 33 chrX 48302975 48303097 -114296833 - L1MC3 LINE L1 -1579 6206 6085 * 503 216 58 37 chrX 48303070 48303097 -114296833 - L1M4 LINE L1 -3168 2978 2953 2304 99 0 0 chrX 48303097 48303401 -114296529 - AluY SINE Alu -7 304 1 503 216 58 37 chrX 48303401 48303513 -114296417 - L1M4 LINE L1 -3193 2953 2831 2045 116 0 13 chrX 48303513 48303814 -114296116 - AluSg SINE Alu -5 305 9 503 216 58 37 chrX 48303814 48303863 -114296067 - L1M4 LINE L1 -3315 2831 2785 2288 114 0 0 chrX 48303887 48304186 -114295744 - AluSx SINE Alu -13 299 1 482 265 81 27 chrX 48304364 48304587 -114295343 - L1MEc LINE L1 -6613 246 12 22 35 0 0 chrX 48304645 48304674 -114295256 + AT_rich Low_complexity Low_complexity 1 29 0 1857 151 3 23 chrX 48304708 48305007 -114294923 - AluJo SINE Alu -19 293 1 579 242 51 6 chrX 48305317 48305474 -114294456 + MER103 DNA DNA 2 165 -1 2310 115 0 0 chrX 48305495 48305800 -114294130 + AluSx SINE Alu 1 305 -7 315 0 0 0 chrX 48305886 48305921 -114294009 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1186 114 0 0 chrX 48305924 48306082 -114293848 - AluSg/x SINE Alu -31 279 122 2028 219 125 8 chrX 48306146 48306643 -114293287 + MER68 LTR ERV1 1 555 -7 1490 137 5 0 chrX 48306672 48306883 -114293047 + AluJb SINE Alu 1 212 -100 2502 52 0 0 chrX 48306922 48307210 -114292720 + AluY SINE Alu 1 288 -23 531 289 96 5 chrX 48307225 48307412 -114292518 - MIR SINE MIR -57 205 2 2334 106 0 6 chrX 48307530 48307842 -114292088 + AluSq SINE Alu 1 310 -3 2179 122 3 0 chrX 48308294 48308598 -114291332 - AluSx SINE Alu -7 305 1 185 357 85 31 chrX 48308607 48308736 -114291194 - L2 LINE L2 -619 2695 2560 1589 182 37 14 chrX 48308933 48309229 -114290701 - AluJo SINE Alu -9 303 1 225 65 0 0 chrX 48309714 48309745 -114290185 + (TG)n Simple_repeat Simple_repeat 2 32 0 314 86 0 0 chrX 48309767 48309818 -114290112 - Alu SINE Alu -20 282 241 360 59 0 0 chrX 48310062 48310113 -114289817 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 1990 118 4 0 chrX 48310136 48310407 -114289523 - AluSx SINE Alu -35 277 6 2273 102 7 0 chrX 48310928 48311223 -114288707 + AluSx SINE Alu 1 297 -15 1952 91 0 0 chrX 48311393 48311636 -114288294 - AluSx SINE Alu -24 288 46 278 281 223 11 chrX 48311659 48311818 -114288112 + MIR SINE MIR 16 198 -64 336 300 86 7 chrX 48312363 48312503 -114287427 + MIR3 SINE MIR 51 201 -7 629 185 7 89 chrX 48312600 48312640 -114287290 + MER94 DNA DNA 1 43 -91 2445 71 7 0 chrX 48312640 48312935 -114286995 - AluSg SINE Alu -13 297 1 629 185 7 89 chrX 48312935 48313040 -114286890 + MER94 DNA DNA 43 134 0 1002 182 136 5 chrX 48313525 48313723 -114286207 - MER58A DNA MER1_type 0 224 1 746 218 83 0 chrX 48314699 48314855 -114285075 + MIR SINE MIR 40 208 -54 778 288 116 74 chrX 48315018 48315480 -114284450 - L2 LINE L2 -34 3238 2797 2339 92 3 6 chrX 48315480 48315794 -114284136 - AluSq SINE Alu 0 313 1 778 288 116 74 chrX 48315794 48316242 -114283688 - L2 LINE L2 -475 2797 2302 555 207 55 7 chrX 48316285 48316430 -114283500 - HAL1b LINE L1 -6 1342 1191 1905 96 0 15 chrX 48317602 48317862 -114282068 - AluSg SINE Alu -14 296 41 631 258 105 18 chrX 48322714 48322943 -114276987 - MIR SINE MIR -12 250 2 2362 96 0 0 chrX 48323023 48323324 -114276606 - AluSg SINE Alu -9 301 1 2129 134 0 3 chrX 48323327 48323626 -114276304 - AluJb SINE Alu -14 298 1 232 190 17 69 chrX 48324120 48324178 -114275752 + MIR3 SINE MIR 108 162 -46 529 190 113 21 chrX 48324365 48324507 -114275423 + MIR SINE MIR 90 244 -18 2224 94 0 0 chrX 48324767 48325044 -114274886 + AluSc SINE Alu 1 277 -32 483 256 107 48 chrX 48325331 48325395 -114274535 - MER5B DNA MER1_type 0 178 119 571 96 85 0 chrX 48325395 48325489 -114274441 + L1MB2 LINE L1 6068 6169 -2 483 256 107 48 chrX 48325489 48325592 -114274338 - MER5B DNA MER1_type -59 119 1 270 236 154 18 chrX 48325875 48325985 -114273945 - MIR SINE MIR -1 261 137 271 297 33 0 chrX 48325990 48326081 -114273849 + L2 LINE L2 3220 3313 0 428 293 60 8 chrX 48326085 48326218 -114273712 - MIR SINE MIR -117 145 6 236 250 29 0 chrX 48326255 48326323 -114273607 - MLT1K LTR MaLR -7 581 512 2241 100 3 0 chrX 48326837 48327126 -114272804 + AluSx SINE Alu 1 290 -22 2377 72 0 0 chrX 48327134 48327424 -114272506 + AluSc SINE Alu 1 290 -19 272 149 0 21 chrX 48327596 48327643 -114272287 - MER5A DNA MER1_type 0 189 144 3142 163 44 36 chrX 48327645 48327766 -114272164 + MER67B LTR ERV1 1 120 -541 2139 121 3 3 chrX 48327766 48328071 -114271859 - AluSx SINE Alu -7 305 1 3142 163 44 36 chrX 48328071 48328156 -114271774 + MER67B LTR ERV1 120 203 -458 2185 98 0 7 chrX 48328156 48328486 -114271444 - AluSx SINE Alu 0 328 1 3142 163 44 36 chrX 48328486 48328911 -114271019 + MER67B LTR ERV1 203 639 -22 716 166 29 14 chrX 48328914 48329053 -114270877 - MER5A DNA MER1_type -48 141 1 2313 97 0 26 chrX 48329057 48329366 -114270564 + AluSx SINE Alu 1 301 -11 685 145 197 8 chrX 48329901 48330018 -114269912 + AluJb SINE Alu 112 250 -62 2206 89 44 0 chrX 48331075 48331368 -114268562 - AluSc SINE Alu -3 306 1 186 103 0 0 chrX 48331726 48331755 -114268175 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 247 210 0 86 chrX 48331973 48332054 -114267876 + C-rich Low_complexity Low_complexity 2 75 0 471 312 145 50 chrX 48332228 48332834 -114267096 + L1M2 LINE L1 397 1060 -5789 233 242 11 0 chrX 48332904 48332995 -114266935 + (CCTA)n Simple_repeat Simple_repeat 3 94 0 194 420 0 8 chrX 48333636 48333767 -114266163 - L2 LINE L2 -218 3054 2925 818 249 69 29 chrX 48334465 48334710 -114265220 - MIR SINE MIR 0 262 8 245 339 87 8 chrX 48334806 48334933 -114264997 - L2 LINE L2 -2 3311 3175 332 224 155 17 chrX 48336426 48336542 -114263388 - MER113 DNA MER1_type? -383 138 7 360 317 66 6 chrX 48336677 48336860 -114263070 - MIR SINE MIR -3 259 66 1166 326 159 22 chrX 48337128 48338297 -114261633 + L2 LINE L2 1611 2939 -375 228 211 96 0 chrX 48338812 48338864 -114261066 - MIR SINE MIR -69 193 137 2322 113 0 0 chrX 48338894 48339195 -114260735 - AluSx SINE Alu -11 301 1 267 339 64 9 chrX 48339227 48339336 -114260594 - MIR SINE MIR -128 134 20 888 256 130 4 chrX 48339421 48339651 -114260279 + MIR SINE MIR 4 262 0 1053 122 0 30 chrX 48339671 48339835 -114260095 + AluJb SINE Alu 135 293 -19 294 246 15 15 chrX 48339987 48340052 -114259878 - L2 LINE L2 -5 3267 3203 651 265 76 9 chrX 48340057 48340280 -114259650 - L2 LINE L2 0 3313 3076 199 160 0 160 chrX 48340262 48340337 -114259593 - L2 LINE L2 -71 3201 3139 * 292 247 0 26 chrX 48340503 48340580 -114259350 + Charlie8 DNA MER1_type 1 75 -2342 4658 229 124 38 chrX 48340749 48340953 -114258977 + Charlie8 DNA MER1_type 61 246 -2171 2437 175 50 63 chrX 48340953 48341552 -114258378 + MLT1E LTR MaLR 3 593 0 4658 229 124 38 chrX 48341552 48341798 -114258132 + Charlie8 DNA MER1_type 246 470 -1947 2497 54 3 0 chrX 48341798 48342092 -114257838 + AluSp SINE Alu 1 295 -18 4658 229 124 38 chrX 48342092 48342482 -114257448 + Charlie8 DNA MER1_type 470 825 -1592 872 163 20 56 chrX 48342482 48342678 -114257252 + MER5A DNA MER1_type 1 189 0 4658 229 124 38 chrX 48342678 48343719 -114256211 + Charlie8 DNA MER1_type 825 2105 -312 1614 144 44 54 chrX 48343926 48344224 -114255706 - AluJo SINE Alu -17 295 1 227 240 93 0 chrX 48344228 48344303 -114255627 + Charlie8 DNA MER1_type 2320 2401 -16 204 138 0 0 chrX 48344651 48344680 -114255250 - MIR SINE MIR -115 147 119 2254 85 17 3 chrX 48344913 48345207 -114254723 + AluSq SINE Alu 1 298 -15 187 292 0 0 chrX 48345843 48345891 -114254039 - L2 LINE L2 -9 3263 3216 1624 158 27 37 chrX 48346037 48346334 -114253596 - AluJb SINE Alu -18 294 1 471 261 84 74 chrX 48346338 48346541 -114253389 + MIR SINE MIR 20 224 -38 367 209 52 43 chrX 48346557 48346672 -114253258 + L2 LINE L2 3189 3304 -9 435 202 37 55 chrX 48346683 48346792 -114253138 - L2 LINE L2 -20 3293 3187 1713 184 21 0 chrX 48346911 48347199 -114252731 + AluJb SINE Alu 1 294 -18 2339 89 0 10 chrX 48347357 48347661 -114252269 - AluSg SINE Alu -9 301 1 182 200 0 22 chrX 48347807 48347852 -114252078 + L2 LINE L2 3267 3310 -3 413 257 35 26 chrX 48348191 48348304 -114251626 + MER5A DNA MER1_type 13 126 -63 1417 247 64 59 chrX 48348660 48349235 -114250695 - L1MC4a LINE L1 -1889 5919 5342 2244 125 0 0 chrX 48349539 48349851 -114250079 - AluSx SINE Alu 0 312 1 244 230 40 14 chrX 48349875 48349949 -114249981 - L1P LINE L1 -1170 4976 4901 671 223 82 31 chrX 48349981 48350299 -114249631 + L1MC5 LINE L1 7452 7785 -176 * 5060 112 12 9 chrX 48350285 48351095 -114248835 + L1MB2 LINE L1 5357 6169 -2 2342 82 3 0 chrX 48351114 48351407 -114248523 + AluSx SINE Alu 1 294 -18 276 30 0 0 chrX 48351428 48351461 -114248469 + (CA)n Simple_repeat Simple_repeat 2 34 0 4042 166 26 5 chrX 48351667 48352448 -114247482 - L1MB7 LINE L1 -19 6165 5369 513 231 119 25 chrX 48352452 48352612 -114247318 + MIR SINE MIR 71 245 -17 374 259 107 9 chrX 48353210 48353322 -114246608 + MIR3 SINE MIR 36 158 -50 273 314 18 83 chrX 48353324 48353793 -114246137 - MER5B DNA MER1_type 0 178 21 288 304 6 95 chrX 48353347 48353414 -114246516 + MER5A DNA MER1_type 35 106 -83 2212 123 0 0 chrX 48353414 48353715 -114246215 + AluSx SINE Alu 1 301 -11 288 304 6 95 chrX 48353715 48353815 -114246115 + MER5A DNA MER1_type 106 187 -2 424 309 70 29 chrX 48353940 48354143 -114245787 + MIR SINE MIR 44 250 -12 452 186 307 21 chrX 48354482 48354622 -114245308 + MIR SINE MIR 25 204 -58 391 268 80 58 chrX 48354849 48354987 -114244943 + MIR SINE MIR 6 146 -62 894 117 15 44 chrX 48355443 48355580 -114244350 + FLAM_C SINE Alu 1 133 0 2316 110 0 0 chrX 48356558 48356859 -114243071 - AluSx SINE Alu -11 301 1 424 265 123 37 chrX 48357042 48357204 -114242726 + MIR SINE MIR 87 262 0 494 296 82 29 chrX 48357212 48357418 -114242512 + MIR SINE MIR 2 218 -44 1668 124 24 8 chrX 48407489 48407739 -114192191 + AluSx SINE Alu 59 312 0 2908 126 56 0 chrX 48407752 48408096 -114191834 - L1PB4 LINE L1 -4 6152 5776 288 0 0 0 chrX 48408096 48408128 -114191802 + (TG)n Simple_repeat Simple_repeat 2 33 0 2908 126 56 0 chrX 48408128 48408227 -114191703 - L1PB4 LINE L1 -380 5776 5684 2478 58 13 26 chrX 48408228 48408538 -114191392 - AluSp SINE Alu -7 306 1 5539 176 20 32 chrX 48408561 48408700 -114191230 - L1MB7 LINE L1 -897 5249 5110 2308 80 7 0 chrX 48408700 48408988 -114190942 - AluSx SINE Alu -22 290 1 5539 176 20 32 chrX 48408988 48409122 -114190808 - L1MB7 LINE L1 -1036 5110 4976 2367 93 0 13 chrX 48409122 48409297 -114190633 - AluSp SINE Alu -5 308 137 2580 71 0 0 chrX 48409297 48409606 -114190324 - AluY SINE Alu -2 309 1 2367 93 0 13 chrX 48409606 48409742 -114190188 - AluSp SINE Alu -176 137 1 2156 121 3 0 chrX 48409742 48410031 -114189899 - AluSx SINE Alu -22 290 1 5539 176 20 32 chrX 48410031 48410930 -114189000 - L1MB7 LINE L1 -1168 4978 4090 1740 139 20 57 chrX 48410936 48411092 -114188838 - AluJo SINE Alu -22 290 149 2262 98 0 0 chrX 48411092 48411387 -114188543 - AluSx SINE Alu -17 295 1 1740 139 20 57 chrX 48411387 48411531 -114188399 - AluJo SINE Alu -163 149 1 236 211 76 108 chrX 48411556 48411741 -114188189 - L1MC4 LINE L1 0 8042 7864 425 269 65 40 chrX 48411763 48411877 -114188053 - L1M4 LINE L1 -979 5167 5057 2110 79 101 0 chrX 48411877 48412154 -114187776 + AluY SINE Alu 1 305 -6 425 269 65 40 chrX 48412154 48412314 -114187616 - L1M4 LINE L1 -1089 5057 4886 1026 57 16 0 chrX 48412339 48412463 -114187467 - AluSg/x SINE Alu -20 290 165 283 91 36 36 chrX 48412463 48412518 -114187412 - MSTC-int LTR MaLR -1679 56 2 1969 130 26 10 chrX 48412520 48412827 -114187103 - AluJb SINE Alu 0 312 1 2138 114 157 24 chrX 48412827 48413203 -114186727 - MSTC LTR MaLR -2 426 1 2318 75 14 17 chrX 48413223 48413516 -114186414 - AluSc SINE Alu -17 292 1 626 169 25 157 chrX 48413516 48413758 -114186172 - L1M4 LINE L1 -1483 4663 4454 2394 87 0 26 chrX 48415023 48415334 -114184596 + AluSx SINE Alu 1 303 -9 15188 60 12 3 chrX 48415335 48417495 -114182435 + L1P2 LINE L1 3419 5589 -565 2201 128 0 0 chrX 48417585 48417889 -114182041 - AluSx SINE Alu -3 309 6 2219 105 0 7 chrX 48418025 48418319 -114181611 - AluSx SINE Alu -20 292 1 196 253 105 11 chrX 48418459 48418554 -114181376 - MIR SINE MIR -112 150 47 709 273 72 44 chrX 48418699 48419128 -114180802 + L1M4 LINE L1 4405 4845 -1301 2316 68 17 14 chrX 48419146 48419440 -114180490 + AluSx SINE Alu 1 295 -17 2138 114 157 24 chrX 48419460 48419836 -114180094 + MSTC LTR MaLR 1 426 -2 1980 129 26 7 chrX 48419836 48420138 -114179792 + AluJb SINE Alu 1 308 -4 4560 251 47 36 chrX 48420138 48421459 -114178471 + MSTC-int LTR MaLR 6 1340 -311 1525 145 64 57 chrX 48421486 48421641 -114178289 - AluJo SINE Alu -7 305 153 234 62 0 0 chrX 48421641 48421673 -114178257 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2281 75 0 7 chrX 48421673 48421955 -114177975 - AluY SINE Alu -31 280 1 1525 145 64 57 chrX 48421955 48422081 -114177849 - AluJo SINE Alu -158 154 21 296 100 20 20 chrX 48422091 48422141 -114177789 + MSTC-int LTR MaLR 1495 1544 -191 469 111 0 0 chrX 48422152 48422224 -114177706 + MSTC LTR MaLR 353 424 -4 2481 152 57 120 chrX 48422225 48422861 -114177069 + L1M4 LINE L1 4658 5333 -851 1682 180 7 10 chrX 48422861 48423150 -114176780 + AluJo SINE Alu 13 300 -12 2481 152 57 120 chrX 48423150 48423245 -114176685 + L1M4 LINE L1 5333 5432 -752 2195 87 11 0 chrX 48423245 48423546 -114176384 + AluSg SINE Alu 1 304 0 2481 152 57 120 chrX 48423546 48423823 -114176107 + L1M4 LINE L1 5432 5721 -463 2489 87 3 0 chrX 48423823 48424135 -114175795 + AluSq SINE Alu 1 313 0 2499 43 0 0 chrX 48424138 48424449 -114175481 + AluY SINE Alu 1 311 0 337 186 0 17 chrX 48424749 48424808 -114175122 - Alu SINE Alu -246 53 1 924 252 63 37 chrX 48425248 48425629 -114174301 + L1ME4a LINE L1 5524 5914 -207 2293 118 0 0 chrX 48425731 48426035 -114173895 - AluSx SINE Alu -8 304 1 2236 116 3 0 chrX 48426208 48426511 -114173419 + AluSq SINE Alu 1 304 -9 1517 166 72 28 chrX 48426517 48426807 -114173123 + AluJb SINE Alu 1 303 -9 241 206 48 32 chrX 48426989 48427052 -114172878 - L2 LINE L2 0 3272 3209 976 137 18 96 chrX 48427069 48427242 -114172688 - AluJb SINE Alu 0 309 157 2384 73 0 26 chrX 48427242 48427545 -114172385 - AluSg SINE Alu -15 295 1 976 137 18 96 chrX 48427545 48427616 -114172314 - AluJb SINE Alu -152 157 82 303 275 33 95 chrX 48427617 48427765 -114172165 - MIR SINE MIR -51 211 78 2552 64 0 22 chrX 48427765 48428079 -114171851 + AluY SINE Alu 1 307 -4 303 275 33 95 chrX 48428079 48428141 -114171789 - MIR SINE MIR -184 78 14 346 266 158 20 chrX 48429136 48429339 -114170591 - L1M4 LINE L1 -3442 2704 2474 204 125 0 0 chrX 48429595 48429627 -114170303 + (CCCCCT)n Simple_repeat Simple_repeat 2 33 0 2028 118 0 4 chrX 48429630 48429901 -114170029 - AluSx SINE Alu -42 270 1 590 276 6 41 chrX 48429920 48430123 -114169807 - MIR SINE MIR -62 146 5 270 328 77 92 chrX 48430242 48430697 -114169233 + L2 LINE L2 2825 3272 0 675 214 7 7 chrX 48431265 48431405 -114168525 + MIR SINE MIR 2 141 -121 2263 150 27 77 chrX 48431411 48431654 -114168276 - MSTB1 LTR MaLR -4 428 215 2255 76 7 4 chrX 48431654 48431930 -114168000 + AluSq SINE Alu 23 299 -14 2263 150 27 77 chrX 48431930 48432127 -114167803 - MSTB1 LTR MaLR -217 215 10 221 192 0 39 chrX 48432137 48432189 -114167741 + MIR SINE MIR 175 224 -38 2304 89 10 0 chrX 48432194 48432487 -114167443 - AluSp SINE Alu -17 296 1 21 36 0 0 chrX 48432943 48432971 -114166959 + AT_rich Low_complexity Low_complexity 1 28 0 666 149 0 90 chrX 48433043 48433110 -114166820 - MSTB1 LTR MaLR 0 432 381 2177 131 0 0 chrX 48433110 48433400 -114166530 - AluSx SINE Alu -22 290 1 666 149 0 90 chrX 48433400 48433466 -114166464 - MSTB1 LTR MaLR -51 381 311 227 292 0 0 chrX 48433466 48433531 -114166399 - L1ME LINE L1 -484 5637 5573 2373 112 0 6 chrX 48433544 48433858 -114166072 - AluSx SINE Alu 0 312 1 2041 94 0 0 chrX 48434842 48435098 -114164832 - AluSc SINE Alu -17 292 37 1053 197 0 49 chrX 48435301 48435385 -114164545 + MER58A DNA MER1_type 32 119 -2301 2376 106 0 3 chrX 48435385 48435696 -114164234 - AluSx SINE Alu -2 310 1 1053 197 0 49 chrX 48435696 48435814 -114164116 + MER58A DNA MER1_type 119 224 0 2266 95 3 0 chrX 48436567 48436862 -114163068 - AluSq SINE Alu -17 296 13 224 233 0 0 chrX 48437282 48437325 -114162605 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1056 95 0 7 chrX 48437471 48437618 -114162312 - AluSp SINE Alu -166 147 2 1791 133 10 13 chrX 48438147 48438447 -114161483 + AluSx SINE Alu 1 299 -13 1569 151 48 7 chrX 48438531 48438687 -114161243 - AluJo SINE Alu -30 282 109 477 0 0 0 chrX 48438687 48438740 -114161190 + (TG)n Simple_repeat Simple_repeat 1 53 0 1569 151 48 7 chrX 48438740 48438854 -114161076 - AluJo SINE Alu -203 109 1 2080 117 3 7 chrX 48439038 48439338 -114160592 - AluSx SINE Alu -13 299 1 2190 111 0 0 chrX 48439465 48439763 -114160167 + AluSx SINE Alu 1 298 -14 241 180 80 0 chrX 48439807 48439857 -114160073 - L2 LINE L2 0 3272 3219 2136 98 0 16 chrX 48439968 48440273 -114159657 - AluSx SINE Alu -12 300 1 2087 127 0 6 chrX 48440370 48440684 -114159246 - AluSx SINE Alu 0 312 1 1795 174 0 13 chrX 48440970 48441286 -114158644 - AluJb SINE Alu 0 312 1 2147 101 10 10 chrX 48441289 48441597 -114158333 - AluSq SINE Alu -5 308 1 2240 78 7 0 chrX 48442365 48442658 -114157272 - AluSp SINE Alu -18 295 1 296 48 24 0 chrX 48442691 48442733 -114157197 + (TC)n Simple_repeat Simple_repeat 1 43 0 1512 151 21 35 chrX 48442733 48442885 -114157045 - AluJb SINE Alu -32 280 132 2085 69 4 7 chrX 48442885 48443161 -114156769 - AluY SINE Alu -1 310 36 1512 151 21 35 chrX 48443161 48443292 -114156638 - AluJb SINE Alu -180 132 1 203 328 16 0 chrX 48443449 48443513 -114156417 - MIR SINE MIR -1 261 197 2736 7 0 0 chrX 48443932 48444237 -114155693 + AluY SINE Alu 1 305 -6 492 301 0 57 chrX 48444409 48444487 -114155443 - MIR SINE MIR -42 220 139 1574 139 93 11 chrX 48444487 48444767 -114155163 - AluJb SINE Alu -9 303 1 492 301 0 57 chrX 48444767 48444917 -114155013 - MIR SINE MIR -123 139 5 193 329 41 27 chrX 48444923 48444996 -114154934 - MIR SINE MIR -182 80 7 1781 145 0 0 chrX 48445103 48445365 -114154565 - AluJo SINE Alu -48 264 3 636 206 35 21 chrX 48445373 48445514 -114154416 - MIR SINE MIR -10 252 110 1627 135 38 4 chrX 48445817 48446084 -114153846 - AluSx SINE Alu 0 312 37 2058 69 8 0 chrX 48446084 48446344 -114153586 - AluSq SINE Alu -51 262 1 2187 76 7 10 chrX 48446359 48446660 -114153270 - AluSg SINE Alu -10 300 1 796 217 31 12 chrX 48446812 48446973 -114152957 + MIR SINE MIR 24 187 -75 1658 158 0 0 chrX 48447002 48447262 -114152668 - AluJb SINE Alu -13 299 40 187 179 45 0 chrX 48447263 48447303 -114152627 + MIR SINE MIR 116 157 -105 2224 69 10 0 chrX 48447472 48447760 -114152170 + AluSp SINE Alu 12 302 -11 556 294 94 5 chrX 48447841 48448042 -114151888 + MIR SINE MIR 2 220 -42 1867 150 0 0 chrX 48448051 48448345 -114151585 + AluJb SINE Alu 1 294 -18 1974 124 3 7 chrX 48448445 48448743 -114151187 + AluSx SINE Alu 1 297 -15 29 0 0 0 chrX 48449742 48449771 -114150159 + AT_rich Low_complexity Low_complexity 1 29 0 578 143 8 0 chrX 48449975 48450094 -114149836 + (TG)n Simple_repeat Simple_repeat 1 120 0 210 171 0 0 chrX 48450148 48450189 -114149741 + (TATG)n Simple_repeat Simple_repeat 4 44 0 417 86 0 0 chrX 48450189 48450247 -114149683 + (CATA)n Simple_repeat Simple_repeat 2 59 0 543 69 0 0 chrX 48453332 48453404 -114146526 + (CTATT)n Simple_repeat Simple_repeat 4 75 0 317 330 105 60 chrX 48454008 48454341 -114145589 + L2 LINE L2 2281 2628 -686 279 259 200 0 chrX 48454846 48454931 -114144999 + L2 LINE L2 3170 3271 -1 478 260 167 23 chrX 48455436 48455650 -114144280 - MIR SINE MIR -13 249 12 251 256 0 39 chrX 48455989 48456067 -114143863 - MIR SINE MIR -12 250 176 520 178 119 17 chrX 48456099 48456217 -114143713 - MLT1I LTR MaLR 0 409 280 2235 85 3 0 chrX 48456266 48456561 -114143369 + AluSp SINE Alu 2 297 -16 2689 10 7 0 chrX 48456562 48456869 -114143061 + AluYa5 SINE Alu 1 309 -2 2051 88 3 29 chrX 48456895 48457202 -114142728 - AluSq SINE Alu -14 299 1 503 125 0 0 chrX 48457205 48457277 -114142653 + U3 snRNA snRNA 1 72 -145 495 289 75 11 chrX 48457310 48457497 -114142433 - MLT1I LTR MaLR -203 206 8 264 186 221 12 chrX 48457710 48457796 -114142134 + MIR SINE MIR 158 261 -1 1973 119 3 3 chrX 48458230 48458523 -114141407 - AluSx SINE Alu -15 297 5 495 251 76 76 chrX 48458780 48458847 -114141083 + MER5A DNA MER1_type 10 76 -113 2200 95 0 7 chrX 48458847 48459142 -114140788 + AluSx SINE Alu 1 293 -19 495 251 76 76 chrX 48459142 48459189 -114140741 + MER5A DNA MER1_type 76 122 -67 2428 67 0 0 chrX 48459189 48459489 -114140441 - AluY SINE Alu -11 300 1 495 251 76 76 chrX 48459489 48459544 -114140386 + MER5A DNA MER1_type 121 180 -9 1638 140 14 14 chrX 48459555 48459840 -114140090 + AluJo SINE Alu 11 295 -17 193 271 21 0 chrX 48459923 48459971 -114139959 + MER5B DNA MER1_type 1 49 -129 2098 123 0 0 chrX 48460037 48460339 -114139591 + AluSx SINE Alu 1 302 -10 2328 76 0 0 chrX 48460348 48460649 -114139281 + AluY SINE Alu 11 311 0 21 0 0 0 chrX 48460708 48460729 -114139201 + AT_rich Low_complexity Low_complexity 1 21 0 769 135 0 0 chrX 48460738 48460849 -114139081 - FLAM_C SINE Alu -20 123 13 1852 134 7 3 chrX 48460855 48461146 -114138784 - AluJb SINE Alu -16 296 5 748 83 37 0 chrX 48461211 48461320 -114138610 - L1PB1 LINE L1 0 6151 6039 2177 78 10 36 chrX 48461323 48461494 -114138436 - AluSq SINE Alu -14 299 138 2203 95 3 3 chrX 48461494 48461800 -114138130 - AluSx SINE Alu -6 306 1 2177 78 10 36 chrX 48461800 48461935 -114137995 - AluSq SINE Alu -175 138 1 546 225 150 0 chrX 48461947 48462120 -114137810 - L1MC/D LINE L1 -1991 5817 5619 277 146 0 0 chrX 48462120 48462161 -114137769 - MLT1L LTR MaLR 0 615 575 838 157 21 120 chrX 48462275 48462337 -114137593 + MER5A DNA MER1_type 18 85 -104 2073 106 3 22 chrX 48462337 48462649 -114137281 + AluSx SINE Alu 4 309 -3 838 157 21 120 chrX 48462649 48462777 -114137153 + MER5A DNA MER1_type 85 189 0 339 298 34 62 chrX 48462787 48462965 -114136965 - MLT1K LTR MaLR -230 358 186 187 68 91 0 chrX 48463124 48463168 -114136762 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 617 290 76 20 chrX 48463168 48463471 -114136459 - L1MC/D LINE L1 -2219 5589 5270 2313 106 0 0 chrX 48463483 48463795 -114136135 - AluSx SINE Alu 0 312 1 306 301 88 47 chrX 48463827 48463997 -114135933 - L1MC/D LINE L1 -888 5258 5096 2019 108 10 24 chrX 48463997 48464292 -114135638 + AluSx SINE Alu 1 291 -21 306 301 88 47 chrX 48464292 48464566 -114135364 - L1MC/D LINE L1 -1050 5096 4796 1148 115 0 0 chrX 48464570 48464735 -114135195 - AluSp SINE Alu -1 312 148 1491 104 0 0 chrX 48464735 48464937 -114134993 - AluSx SINE Alu -110 202 1 1171 132 0 0 chrX 48464991 48465165 -114134765 - AluJb SINE Alu -13 299 126 2342 77 3 0 chrX 48465166 48465465 -114134465 - AluSp SINE Alu -13 300 1 822 153 22 29 chrX 48465605 48465742 -114134188 + AluJo SINE Alu 2 137 -175 238 162 27 0 chrX 48465801 48465838 -114134092 + Alu SINE Alu 1 38 -264 1676 91 0 9 chrX 48465838 48466068 -114133862 - AluSq SINE Alu -85 228 1 796 222 132 31 chrX 48466226 48466514 -114133416 - L2 LINE L2 -71 3242 2926 747 283 88 59 chrX 48466517 48466993 -114132937 + L1MC4a LINE L1 4982 5443 -678 1936 142 3 0 chrX 48466993 48467303 -114132627 + AluSq SINE Alu 1 311 -2 747 283 88 59 chrX 48467303 48467413 -114132517 + L1MC4a LINE L1 5443 5548 -573 2342 59 0 0 chrX 48467413 48467703 -114132227 - AluY SINE Alu -7 304 15 747 283 88 59 chrX 48467703 48467924 -114132006 + L1MC4a LINE L1 5548 5757 -364 2219 88 0 0 chrX 48467924 48468218 -114131712 + AluSc SINE Alu 1 294 -15 747 283 88 59 chrX 48468218 48468283 -114131647 + L1MC4a LINE L1 5757 5819 -302 373 195 0 125 chrX 48468491 48468571 -114131359 - MER45 DNA AcHobo -2 1579 1519 2271 101 0 0 chrX 48468571 48468878 -114131052 + AluSx SINE Alu 1 307 -5 373 195 0 125 chrX 48468878 48468925 -114131005 - MER45 DNA AcHobo -62 1519 1468 2962 58 0 0 chrX 48468927 48469274 -114130656 + L1P LINE L1 7 353 -5793 * 3069 36 3 0 chrX 48469269 48469630 -114130300 + L1P LINE L1 3455 3816 -2330 2031 25 0 0 chrX 48469630 48469855 -114130075 + L1PA4 LINE L1 5917 6152 -3 1785 118 3 46 chrX 48469879 48470183 -114129747 + AluSx SINE Alu 1 291 -21 737 133 172 0 chrX 48470188 48470293 -114129637 - MER45R DNA AcHobo -107 1474 1388 2093 119 0 0 chrX 48470293 48470588 -114129342 - AluSx SINE Alu -16 296 2 737 133 172 0 chrX 48470588 48470685 -114129245 - MER45R DNA AcHobo -193 1388 1237 2190 86 0 3 chrX 48470685 48470976 -114128954 - AluSp SINE Alu -14 299 10 2336 66 7 10 chrX 48470988 48471293 -114128637 - AluSq SINE Alu -9 304 1 1282 143 0 36 chrX 48471300 48471524 -114128406 - AluJo SINE Alu -15 297 82 233 56 0 28 chrX 48471526 48471562 -114128368 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1466 178 7 25 chrX 48471562 48471848 -114128082 - AluJo SINE Alu -31 281 1 4013 184 60 8 chrX 48471848 48472619 -114127311 - MER45R DNA AcHobo -770 811 1 702 267 40 8 chrX 48472800 48473051 -114126879 + MIR SINE MIR 4 262 0 804 277 147 23 chrX 48473944 48473968 -114125962 + L2 LINE L2 2919 2939 -374 2353 74 0 0 chrX 48473968 48474264 -114125666 - AluY SINE Alu -15 296 1 804 277 147 23 chrX 48474264 48474586 -114125344 + L2 LINE L2 2939 3308 -5 520 296 57 0 chrX 48474590 48474749 -114125181 + L2 LINE L2 3146 3313 0 194 363 97 17 chrX 48474751 48475040 -114124890 + L2 LINE L2 2316 2627 -687 830 216 196 4 chrX 48475057 48475302 -114124628 + MER69 DNA AcHobo 17 308 -918 812 107 25 16 chrX 48475331 48475453 -114124477 - AluJb SINE Alu -189 123 1 246 216 148 23 chrX 48475457 48475545 -114124385 + MER69 DNA AcHobo 304 402 -824 * 384 122 47 131 chrX 48475543 48475575 -114124355 + MER69 DNA AcHobo 2422 2455 -71 2092 105 0 0 chrX 48475575 48475870 -114124060 - AluSg SINE Alu -15 295 1 384 122 47 131 chrX 48475870 48475944 -114123986 + MER69 DNA AcHobo 2455 2519 -7 1332 161 104 7 chrX 48475948 48476227 -114123703 + AluJo SINE Alu 7 312 0 186 167 0 0 chrX 48476931 48476967 -114122963 + CT-rich Low_complexity Low_complexity 2 37 0 2198 91 13 0 chrX 48479853 48480162 -114119768 - AluSp SINE Alu 0 313 1 315 340 9 0 chrX 48480242 48480348 -114119582 + MIR SINE MIR 37 143 -65 2204 101 0 16 chrX 48480768 48481084 -114118846 - AluSx SINE Alu 0 312 2 203 316 74 21 chrX 48481191 48481286 -114118644 - MIR SINE MIR -5 257 158 355 344 97 32 chrX 48481359 48481606 -114118324 + L2 LINE L2 2715 2977 -337 369 245 75 9 chrX 48481745 48481851 -114118079 + L2 LINE L2 3201 3313 0 259 249 141 65 chrX 48482091 48482473 -114117457 - L1ME4a LINE L1 -2 6119 5709 2235 99 3 0 chrX 48483026 48483328 -114116602 - AluSg SINE Alu -7 303 1 182 246 217 0 chrX 48483409 48483478 -114116452 - MIR SINE MIR -82 180 97 520 243 27 9 chrX 48483608 48483719 -114116211 - MER5A DNA MER1_type 0 189 77 405 230 310 0 chrX 48483951 48484064 -114115866 + MER5A DNA MER1_type 42 189 0 190 250 238 36 chrX 48484222 48484306 -114115624 + MIR SINE MIR 28 128 -134 1165 225 109 50 chrX 48484410 48484652 -114115278 - L1M4 LINE L1 -2631 3515 3289 1922 132 3 10 chrX 48484652 48484948 -114114982 + AluJb SINE Alu 17 310 -2 1165 225 109 50 chrX 48484948 48485161 -114114769 - L1M4 LINE L1 -2857 3289 3019 2249 79 30 3 chrX 48485161 48485466 -114114464 - AluSq SINE Alu 0 313 1 1165 225 109 50 chrX 48485466 48485568 -114114362 - L1M4 LINE L1 -3127 3019 2924 435 128 0 0 chrX 48485582 48485660 -114114270 - Alu SINE Alu -1 309 232 442 223 11 11 chrX 48685660 48685754 -113914176 + MER87 LTR ERV1 376 469 -72 615 125 0 0 chrX 48685756 48685844 -113914086 + AluJb SINE Alu 204 291 -21 402 274 68 17 chrX 48685845 48685962 -113913968 - L2 LINE L2 -1 3271 3149 1010 238 46 87 chrX 48686020 48686214 -113913716 - L1MEc LINE L1 -4375 2747 2547 771 189 0 0 chrX 48686214 48686341 -113913589 + FLAM_C SINE Alu 1 127 -6 1010 238 46 87 chrX 48686341 48686363 -113913567 - L1MEc LINE L1 -4575 2547 2526 1916 122 0 3 chrX 48686363 48686658 -113913272 + AluSx SINE Alu 1 294 -18 1010 238 46 87 chrX 48686658 48686898 -113913032 - L1MEc LINE L1 -4596 2526 2309 240 244 12 24 chrX 48686878 48686960 -113912970 - L1MEc LINE L1 -4858 2083 2003 * 327 237 0 31 chrX 48686953 48687050 -113912880 - L1MEc LINE L1 -5180 1243 1150 25 0 0 0 chrX 48687081 48687106 -113912824 + AT_rich Low_complexity Low_complexity 1 25 0 13751 38 13 11 chrX 48687106 48689542 -113910388 - L1PA5 LINE L1 -4 6150 3696 230 119 0 48 chrX 48689580 48689622 -113910308 + L1M4 LINE L1 4295 4334 -1812 5109 136 25 40 chrX 48689624 48689815 -113910115 - L1MA5A LINE L1 -1 6296 6104 2068 125 0 0 chrX 48689815 48690112 -113909818 - AluSx SINE Alu -15 297 1 5109 136 25 40 chrX 48690112 48690780 -113909150 - L1MA5A LINE L1 -193 6104 5428 207 0 0 0 chrX 48690780 48690803 -113909127 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5109 136 25 40 chrX 48690803 48690866 -113909064 - L1MA5A LINE L1 -869 5428 5366 745 199 0 0 chrX 48690866 48690997 -113908933 - FLAM_A SINE Alu -2 131 1 5109 136 25 40 chrX 48690997 48691216 -113908714 - L1MA5A LINE L1 -931 5366 5220 1661 175 3 7 chrX 48691244 48691553 -113908377 - AluJb SINE Alu -4 308 1 182 328 82 0 chrX 48693908 48693969 -113905961 - L3 LINE CR1 -1109 468 403 455 226 43 9 chrX 48694830 48694945 -113904985 - L2 LINE L2 -1 3312 3194 4377 151 49 30 chrX 48695013 48695900 -113904030 - MER4D LTR ERV1 0 872 1 325 287 43 74 chrX 48695915 48696173 -113903757 - L2 LINE L2 -181 3132 2883 1725 150 0 23 chrX 48696660 48696960 -113902970 + AluSx SINE Alu 1 293 -19 209 281 249 16 chrX 48697883 48698068 -113901862 + MIR SINE MIR 20 247 -15 307 202 214 0 chrX 48698494 48698529 -113901401 - L1MA9 LINE L1 -38 6274 6248 207 0 0 0 chrX 48698529 48698552 -113901378 + (CA)n Simple_repeat Simple_repeat 2 24 0 307 202 214 0 chrX 48698552 48698605 -113901325 - L1MA9 LINE L1 -64 6248 6167 416 327 55 50 chrX 48698855 48699415 -113900515 - L2 LINE L2 -415 2899 2337 255 312 21 11 chrX 48699430 48699523 -113900407 + MIR SINE MIR 63 156 -106 536 262 19 5 chrX 48700034 48700187 -113899743 + MIR SINE MIR 2 154 -64 806 227 49 62 chrX 48700292 48700493 -113899437 + MER92C LTR ERV1 2 204 -350 2274 178 111 31 chrX 48700493 48701015 -113898915 - LTR6A LTR ERV1 0 564 1 806 227 49 62 chrX 48701015 48701200 -113898730 + MER92C LTR ERV1 204 458 -96 39372 80 6 15 chrX 48701342 48707459 -113892471 - L1PA6 LINE L1 -77 6077 20 388 243 48 0 chrX 48707486 48707589 -113892341 + L1M4 LINE L1 2944 3051 -3095 791 153 0 0 chrX 48707600 48707718 -113892212 + FLAM_C SINE Alu 2 119 -24 416 239 94 0 chrX 48707728 48707866 -113892064 + L1M4 LINE L1 4992 5142 -1004 489 275 21 37 chrX 48708256 48708445 -113891485 - MIR SINE MIR -13 249 64 208 358 33 25 chrX 48708798 48708918 -113891012 - MER5A DNA MER1_type -1 188 68 1307 220 52 0 chrX 48709689 48709853 -113890077 - AluJb SINE Alu -1 301 114 273 29 0 0 chrX 48709853 48709887 -113890043 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1307 220 52 0 chrX 48709887 48710008 -113889922 - AluJb SINE Alu -188 114 1 234 261 34 23 chrX 48710212 48710300 -113889630 + MER20B DNA MER1_type 36 124 -659 471 260 46 15 chrX 48710309 48710505 -113889425 + MER20B DNA MER1_type 288 489 -294 206 397 28 28 chrX 48710677 48710818 -113889112 + L2 LINE L2 3125 3265 -7 458 109 16 0 chrX 48710940 48711004 -113888926 - HERVL68 LTR ERVL -69 2968 2904 414 0 0 0 chrX 48711029 48711075 -113888855 + (TG)n Simple_repeat Simple_repeat 1 46 0 1458 255 8 14 chrX 48711090 48711458 -113888472 - MLT2D LTR ERVL -48 366 1 2299 218 32 21 chrX 48711468 48712032 -113887898 - HERVL68-D LTR ERVL -144 2893 2324 266 346 89 15 chrX 48712033 48712235 -113887695 + REP3 LTR ERV 299 515 -47 356 311 66 7 chrX 48712713 48712864 -113887066 - MIR SINE MIR -54 208 49 2596 69 44 8 chrX 48713343 48713704 -113886226 + L1PA8 LINE L1 5794 6167 -5 353 326 49 52 chrX 48713742 48714009 -113885921 - L2 LINE L2 -189 3083 2818 753 208 100 62 chrX 48714098 48714484 -113885446 + MER39 LTR ERV1 4 622 -85 24 0 0 0 chrX 48714812 48714836 -113885094 + AT_rich Low_complexity Low_complexity 1 24 0 206 310 0 46 chrX 48715028 48715115 -113884815 + MIR SINE MIR 180 262 0 799 145 0 0 chrX 48715224 48715348 -113884582 + FLAM_C SINE Alu 1 124 -9 807 83 0 0 chrX 48715660 48715769 -113884161 + AluY SINE Alu 203 311 0 837 264 50 36 chrX 48715769 48715849 -113884081 + L1M4 LINE L1 3603 3680 -2466 1943 188 8 0 chrX 48715849 48716211 -113883719 + MER47A DNA MER2_type 1 365 -1 837 264 50 36 chrX 48716211 48716551 -113883379 + L1M4 LINE L1 3680 4029 -2117 8748 41 4 42 chrX 48716566 48718438 -113881492 + L1PA3 LINE L1 4316 6155 0 3161 49 0 0 chrX 48718438 48718823 -113881107 + L1PA4 LINE L1 5771 6155 0 414 289 60 21 chrX 48718849 48719084 -113880846 + L1M4 LINE L1 4078 4321 -1825 3696 190 99 29 chrX 48719107 48719902 -113880028 - MER21B LTR ERV1 -12 851 1 229 246 91 27 chrX 48719919 48719949 -113879981 + L1M4 LINE L1 4352 4379 -1767 1311 187 9 60 chrX 48719949 48720264 -113879666 - AluJo SINE Alu -3 299 1 229 246 91 27 chrX 48720264 48720343 -113879587 + L1M4 LINE L1 4379 4468 -1678 292 319 0 0 chrX 48721037 48721128 -113878802 - MER94 DNA DNA -39 95 5 6639 33 0 1 chrX 48721975 48722812 -113877118 - L1P2 LINE L1 -718 5437 4602 * 7341 31 1 10 chrX 48722794 48722980 -113876950 + L1P LINE L1 3739 3925 -2221 2561 36 0 7 chrX 48722980 48723289 -113876641 + AluY SINE Alu 1 307 -4 7341 31 1 10 chrX 48723289 48723983 -113875947 + L1P LINE L1 3925 4611 -1535 1054 212 76 86 chrX 48724609 48725072 -113874858 + MER66B LTR ERV1 110 484 -2 802 209 119 9 chrX 48725355 48725565 -113874365 + AluJo SINE Alu 45 277 -35 932 135 7 7 chrX 48725762 48725903 -113874027 - MER52C LTR ERV1 0 1278 1138 4162 198 35 98 chrX 48727769 48728959 -113870971 - MER52A LTR ERV1 -615 1140 25 1728 106 77 15 chrX 48730810 48731084 -113868846 - AluSx SINE Alu -21 291 1 2045 108 28 0 chrX 48731362 48731650 -113868280 - AluSg SINE Alu -14 296 1 315 49 0 0 chrX 48732005 48732046 -113867884 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 8255 23 4 205 chrX 48732055 48733650 -113866280 + SVA Other Other 47 1386 0 22 80 0 0 chrX 48734064 48734114 -113865816 + AT_rich Low_complexity Low_complexity 1 50 0 215 207 21 159 chrX 48734239 48734384 -113865546 - MIR SINE MIR -32 230 106 2129 40 0 25 chrX 48736744 48737018 -113862912 + AluY SINE Alu 37 303 -8 420 267 107 29 chrX 48737068 48737274 -113862656 + L1M4 LINE L1 2990 3211 -2935 246 280 27 0 chrX 48737704 48737779 -113862151 + MER94 DNA DNA 5 81 -53 189 330 128 28 chrX 48738406 48738585 -113861345 + L3 LINE CR1 432 628 -949 479 67 17 0 chrX 48738588 48738648 -113861282 - HERVL68 LTR ERVL -65 2972 2912 243 133 0 0 chrX 48738700 48738745 -113861185 + (TG)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chrX 48738745 48738767 -113861163 + (GA)n Simple_repeat Simple_repeat 1 22 0 1443 234 11 20 chrX 48738772 48739127 -113860803 - MLT2D LTR ERVL -62 352 1 2085 233 30 21 chrX 48739137 48739703 -113860227 - HERVL68-D LTR ERVL -144 2893 2323 229 308 51 8 chrX 48739787 48739904 -113860026 + REP3 LTR ERV 394 515 -47 348 289 73 15 chrX 48740117 48740321 -113859609 + MER113 DNA MER1_type? 11 226 -295 249 341 59 0 chrX 48740388 48740523 -113859407 - MIR SINE MIR -62 200 58 1988 186 123 30 chrX 48740700 48741131 -113858799 - MER21B LTR ERV1 -392 471 1 1243 203 27 44 chrX 48741178 48741474 -113858456 - AluJo SINE Alu -11 291 1 347 284 89 63 chrX 48742750 48743021 -113856909 - L1M4 LINE L1 -2870 3276 2999 1850 134 27 0 chrX 48743601 48743893 -113856037 + AluSx SINE Alu 11 310 -2 188 340 88 20 chrX 48744117 48744264 -113855666 - MIR3 SINE MIR 0 208 52 204 128 0 120 chrX 48745790 48745804 -113854126 + MIR SINE MIR 110 124 -84 1977 142 0 0 chrX 48745804 48746114 -113853816 - AluSx SINE Alu -2 310 1 204 128 0 120 chrX 48746114 48746146 -113853784 + MIR SINE MIR 124 146 -62 1778 113 4 4 chrX 48747294 48747551 -113852379 + AluSq SINE Alu 34 290 -23 890 231 21 0 chrX 48749350 48749592 -113850338 - AluJo SINE Alu -21 291 45 1567 219 59 22 chrX 48749901 48750368 -113849562 - MER110A LTR ERV1 -2 466 19 22 0 0 0 chrX 48750615 48750637 -113849293 + AT_rich Low_complexity Low_complexity 1 22 0 2032 173 41 39 chrX 48750884 48751435 -113848495 - MLT2A2 LTR ERVL 0 554 1 2667 137 9 0 chrX 48753290 48753712 -113846218 - L1PA11 LINE L1 -1 6173 5748 360 234 166 0 chrX 48753883 48754028 -113845902 - L1M4 LINE L1 -1227 4919 4751 323 311 8 0 chrX 48754094 48754226 -113845704 + L2 LINE L2 1528 1660 -1654 337 288 174 18 chrX 48754432 48754651 -113845279 - L2 LINE L2 -1537 1777 1525 232 191 0 0 chrX 48754683 48754725 -113845205 + MER77 LTR ERV1 564 605 0 331 320 6 58 chrX 48754726 48754882 -113845048 + MER77-int LTR ERV1 6 153 -4038 * 891 306 45 54 chrX 48754778 48755219 -113844711 + HERVL68 LTR ERVL 11 528 -2509 1401 220 3 0 chrX 48755219 48755505 -113844425 + AluJo SINE Alu 1 287 -25 891 306 45 54 chrX 48755505 48755734 -113844196 + HERVL68 LTR ERVL 528 758 -2279 1513 253 58 31 chrX 48755752 48756269 -113843661 + HERVL68 LTR ERVL 1836 2366 -671 866 186 17 64 chrX 48756397 48756633 -113843297 + AluJb SINE Alu 54 278 -34 1945 125 0 7 chrX 48756913 48757228 -113842702 + AluSp SINE Alu 6 313 0 433 189 84 0 chrX 48760000 48760095 -113839835 + MIR SINE MIR 67 169 -93 1367 164 77 28 chrX 48760188 48760475 -113839455 - AluJo SINE Alu 0 302 2 2091 102 7 0 chrX 48761221 48761515 -113838415 + AluSg SINE Alu 1 296 -14 319 289 61 9 chrX 48761982 48762096 -113837834 + MIR SINE MIR 32 151 -111 373 289 174 29 chrX 48762163 48762405 -113837525 - L2 LINE L2 -5 3267 2991 999 127 25 0 chrX 48762438 48762595 -113837335 - AluSq SINE Alu -151 162 2 557 148 52 17 chrX 48762596 48762711 -113837219 - MLT2C2 LTR ERVL -345 119 1 2189 109 0 6 chrX 48763206 48763519 -113836411 - AluSx SINE Alu -1 311 1 1640 180 0 3 chrX 48763546 48763857 -113836073 + AluJb SINE Alu 1 310 -2 205 152 0 0 chrX 48764106 48764139 -113835791 + (TG)n Simple_repeat Simple_repeat 2 34 0 1678 269 89 18 chrX 48764425 48765144 -113834786 - L1ME1 LINE L1 -20 6146 5378 415 317 11 17 chrX 48765148 48765328 -113834602 - L1ME1 LINE L1 -807 5339 5161 558 140 0 0 chrX 48765328 48765428 -113834502 + (TATTG)n Simple_repeat Simple_repeat 2 101 0 261 83 0 0 chrX 48765431 48765467 -113834463 + (CTATT)n Simple_repeat Simple_repeat 5 40 0 1751 131 7 7 chrX 48765469 48765759 -113834171 - AluSx SINE Alu -22 290 1 2874 284 83 30 chrX 48765759 48767339 -113832591 - L1ME1 LINE L1 -974 5172 3509 416 284 27 7 chrX 48767610 48767758 -113832172 - MIR SINE MIR -12 250 100 358 297 16 55 chrX 48770167 48770296 -113829634 - MIR SINE MIR -45 163 39 1649 149 41 127 chrX 48770806 48771217 -113828713 + MSTB1 LTR MaLR 1 360 -72 1269 205 51 20 chrX 48771217 48771510 -113828420 - AluJo SINE Alu 0 302 1 1649 149 41 127 chrX 48771510 48771578 -113828352 + MSTB1 LTR MaLR 360 432 0 842 241 91 83 chrX 48771578 48771931 -113827999 - MSTD LTR MaLR -45 351 1 1544 272 13 15 chrX 48772418 48772594 -113827336 + L1MB7 LINE L1 3496 3671 -2475 1859 130 3 0 chrX 48772594 48772908 -113827022 + AluSx SINE Alu 1 315 0 1544 272 13 15 chrX 48772908 48773190 -113826740 + L1MB7 LINE L1 3671 3954 -2192 * 1814 247 37 16 chrX 48773182 48773696 -113826234 + L1MB7 LINE L1 5660 6184 0 391 253 21 22 chrX 48774497 48774631 -113825299 - MER5A DNA MER1_type -7 182 39 282 73 0 0 chrX 48774990 48775031 -113824899 + (TTA)n Simple_repeat Simple_repeat 2 42 0 360 0 0 0 chrX 48775032 48775072 -113824858 + (TG)n Simple_repeat Simple_repeat 1 40 0 2806 130 98 14 chrX 48775073 48775582 -113824348 - L1MA9 LINE L1 -162 6150 5599 322 242 57 32 chrX 48775875 48775999 -113823931 - HAL1 LINE L1 -137 2370 2244 838 167 26 6 chrX 48777446 48777602 -113822328 + FRAM SINE Alu 2 160 -16 1443 180 50 17 chrX 48778329 48778629 -113821301 + AluJo SINE Alu 1 310 -2 2050 55 0 0 chrX 48978810 48979047 -113620883 - AluSq SINE Alu -76 237 1 1571 138 0 147 chrX 48979442 48979636 -113620294 - AluJo SINE Alu 0 302 182 2259 104 7 0 chrX 48979636 48979935 -113619995 - AluSq SINE Alu -12 301 1 1571 138 0 147 chrX 48979935 48980094 -113619836 - AluJo SINE Alu -120 182 1 2620 55 3 3 chrX 48980097 48980406 -113619524 - AluY SINE Alu -2 309 1 27 92 0 0 chrX 48980418 48980494 -113619436 + AT_rich Low_complexity Low_complexity 1 76 0 2455 48 0 48 chrX 48980513 48980827 -113619103 - AluY SINE Alu -12 299 1 2093 132 3 0 chrX 48980875 48981170 -113618760 - AluSx SINE Alu -16 296 1 432 241 113 0 chrX 48981170 48981303 -113618627 - L1ME3A LINE L1 -291 5879 5732 2336 110 7 0 chrX 48981303 48981611 -113618319 - AluSx SINE Alu -2 310 1 1326 57 5 81 chrX 48981626 48981789 -113618141 - L1MA1 LINE L1 0 6302 6128 1953 135 24 3 chrX 48981789 48982086 -113617844 - AluSq SINE Alu -10 303 1 1326 57 5 81 chrX 48982086 48982112 -113617818 - L1MA1 LINE L1 -174 6128 6128 2479 71 0 3 chrX 48982112 48982407 -113617523 + AluY SINE Alu 1 294 -17 1326 57 5 81 chrX 48982407 48982427 -113617503 - L1MA1 LINE L1 -174 6128 6108 1805 63 0 0 chrX 48982427 48982633 -113617297 + AluSp SINE Alu 1 206 -107 278 73 0 0 chrX 48982633 48982674 -113617256 + AluSp SINE Alu 253 293 -10 995 83 22 33 chrX 48982675 48982855 -113617075 - L1MA1 LINE L1 -188 6114 5937 304 267 0 0 chrX 48982918 48982978 -113616952 - MLT1E LTR MaLR -164 429 370 294 50 0 0 chrX 48983067 48983107 -113616823 + (GA)n Simple_repeat Simple_repeat 1 40 0 619 299 0 5 chrX 48983113 48983297 -113616633 - MLT1E LTR MaLR -410 183 1 2024 217 55 37 chrX 48983369 48983932 -113615998 - MER90 LTR ERV1 0 575 3 2087 94 0 31 chrX 48984043 48984330 -113615600 - AluSx SINE Alu -14 298 21 687 13 0 0 chrX 48984330 48984406 -113615524 - AluSq/x SINE Alu -176 136 61 1073 118 0 0 chrX 48984422 48984637 -113615293 + AluSg/x SINE Alu 161 375 0 734 222 0 0 chrX 48984899 48985052 -113614878 - L1MA10 LINE L1 -2 6332 6180 859 49 0 0 chrX 48985123 48985225 -113614705 + AluSg/x SINE Alu 200 301 -11 680 283 125 0 chrX 48985225 48985409 -113614521 - MIR SINE MIR -35 227 21 1561 151 38 0 chrX 48985412 48985651 -113614279 + AluJo SINE Alu 2 249 -63 30 0 0 0 chrX 48985667 48985697 -113614233 + AT_rich Low_complexity Low_complexity 1 30 0 1158 140 0 0 chrX 48985746 48985903 -113614027 - AluSq SINE Alu -156 157 1 1172 248 27 17 chrX 48985904 48986198 -113613732 + L2 LINE L2 2274 2570 -744 1862 143 17 3 chrX 48986277 48986570 -113613360 + AluJb SINE Alu 1 297 -15 2316 74 3 0 chrX 48986570 48986886 -113613044 + AluY SINE Alu 1 317 0 2291 102 0 31 chrX 48987041 48987363 -113612567 + AluSx SINE Alu 1 312 0 203 240 106 29 chrX 48987427 48987531 -113612399 + L2 LINE L2 2925 3036 -236 2413 84 0 0 chrX 48987850 48988147 -113611783 + AluSg SINE Alu 1 297 -13 631 244 52 21 chrX 48988431 48988624 -113611306 - MER63A DNA MER1_type -11 199 1 477 187 0 0 chrX 48988700 48988775 -113611155 + AluJ/FLAM SINE Alu 2 76 -236 878 182 0 25 chrX 48988775 48988934 -113610996 + AluJo/FRAM SINE Alu 154 308 -4 4391 143 26 30 chrX 48988934 48989057 -113610873 + L1MB5 LINE L1 5201 5323 -851 1906 148 27 20 chrX 48989057 48989355 -113610575 + AluJo SINE Alu 1 300 -12 4391 143 26 30 chrX 48989355 48989515 -113610415 + L1MB5 LINE L1 5323 5482 -692 189 0 0 0 chrX 48989515 48989536 -113610394 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4391 143 26 30 chrX 48989536 48989937 -113609993 + L1MB5 LINE L1 5482 5888 -286 2592 57 0 0 chrX 48989937 48990235 -113609695 + AluY SINE Alu 1 298 -13 4391 143 26 30 chrX 48990235 48990403 -113609527 + L1MB5 LINE L1 5888 6055 -119 253 240 27 0 chrX 48990411 48990486 -113609444 + L1MB5 LINE L1 6098 6174 0 349 247 11 11 chrX 48990758 48990851 -113609079 - MIR SINE MIR -30 232 140 2481 104 0 0 chrX 48990924 48991233 -113608697 - AluSx SINE Alu -3 309 1 862 158 57 6 chrX 48991237 48991395 -113608535 - MLT1E LTR MaLR 0 593 428 250 235 44 0 chrX 48991419 48991487 -113608443 - MLT1E LTR MaLR -409 184 114 * 627 199 23 131 chrX 48991461 48991637 -113608293 - MLT1E LTR MaLR -427 166 1 1874 157 3 7 chrX 48991739 48992038 -113607892 + AluJb SINE Alu 1 298 -14 2489 75 0 3 chrX 48992096 48992402 -113607528 - AluY SINE Alu -4 307 3 2433 78 0 0 chrX 48992428 48992721 -113607209 - AluSg SINE Alu -17 293 1 1461 249 55 86 chrX 48993521 48994083 -113605847 - L2 LINE L2 0 3313 2775 2246 105 0 29 chrX 48994083 48994396 -113605534 - AluSx SINE Alu -8 304 1 1461 249 55 86 chrX 48994396 48994530 -113605400 - L2 LINE L2 -538 2775 2638 241 254 127 0 chrX 48994561 48994632 -113605298 - MER91A DNA MER1_type -29 167 88 2442 80 3 26 chrX 48994640 48994953 -113604977 + AluSg SINE Alu 3 308 -2 776 233 49 0 chrX 48994959 48995122 -113604808 - MER91A DNA MER1_type -25 171 1 324 209 58 0 chrX 48995124 48995210 -113604720 - L2 LINE L2 -671 2643 2553 350 365 0 0 chrX 48995608 48995715 -113604215 + MIR SINE MIR 41 147 -61 2440 87 3 10 chrX 48995985 48996161 -113603769 - AluSx SINE Alu -2 310 135 2326 93 3 0 chrX 48996161 48996463 -113603467 - AluY SINE Alu -8 303 1 2440 87 3 10 chrX 48996463 48996598 -113603332 - AluSx SINE Alu -177 135 1 191 157 0 57 chrX 48996751 48996821 -113603109 + T-rich Low_complexity Low_complexity 1 66 0 269 257 136 7 chrX 48997514 48997654 -113602276 - MER113 DNA MER1_type? -363 158 1 842 158 8 0 chrX 48997779 48997912 -113602018 - AluJo SINE Alu -178 134 1 806 203 115 21 chrX 48998193 48998385 -113601545 + Charlie1 DNA MER1_type 1 210 -2551 2886 106 12 0 chrX 48998385 48998809 -113601121 + L1PA16 LINE L1 5710 6138 -28 1907 159 0 20 chrX 48998809 48999110 -113600820 - AluJb SINE Alu -17 295 1 627 224 0 0 chrX 48999111 48999245 -113600685 + Charlie1 DNA MER1_type 2628 2761 0 247 217 183 26 chrX 48999245 48999356 -113600574 + MLT1L LTR MaLR 148 276 -339 2167 130 0 3 chrX 48999378 48999677 -113600253 + AluJb SINE Alu 1 298 -14 1050 62 34 17 chrX 48999839 49000016 -113599914 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1908 142 4 4 chrX 49000030 49000304 -113599626 - AluJb SINE Alu -33 279 6 893 209 25 0 chrX 49000556 49000714 -113599216 + FRAM SINE Alu 1 162 -4 713 276 207 17 chrX 49000951 49001389 -113598541 - L2 LINE L2 0 3313 2791 341 88 0 0 chrX 49001404 49001461 -113598469 - L1MB3 LINE L1 0 6183 6127 297 79 0 0 chrX 49001480 49001518 -113598412 - LTR23 LTR ERV1 -80 357 320 1741 127 12 50 chrX 49001518 49001750 -113598180 - L1MB2 LINE L1 -40 6131 5913 777 159 15 15 chrX 49001750 49001882 -113598048 - FLAM_C SINE Alu 0 133 2 1741 127 12 50 chrX 49001882 49001972 -113597958 - L1MB2 LINE L1 -258 5913 5821 1970 165 0 3 chrX 49002005 49002314 -113597616 - AluJb SINE Alu -3 309 2 1260 151 82 167 chrX 49002554 49002598 -113597332 - MLT1C LTR MaLR -25 442 396 2325 84 13 13 chrX 49002598 49002906 -113597024 + AluSp SINE Alu 1 308 -5 1260 151 82 167 chrX 49002906 49003114 -113596816 - MLT1C LTR MaLR -71 396 248 2285 119 3 3 chrX 49003114 49003426 -113596504 - AluSx SINE Alu 0 312 1 1260 151 82 167 chrX 49003426 49003650 -113596280 - MLT1C LTR MaLR -219 248 6 1193 116 17 12 chrX 49003804 49003976 -113595954 + AluSx SINE Alu 1 173 -139 2193 60 60 18 chrX 49004059 49004341 -113595589 + AluY SINE Alu 1 294 -17 2326 83 0 3 chrX 49005274 49005563 -113594367 + AluSx SINE Alu 1 288 -24 2300 110 0 3 chrX 49005563 49005873 -113594057 - AluSp SINE Alu -4 309 1 1575 158 6 73 chrX 49005881 49006082 -113593848 - AluJb SINE Alu -7 305 131 467 31 31 0 chrX 49006082 49006146 -113593784 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1575 158 6 73 chrX 49006146 49006260 -113593670 - AluJb SINE Alu -181 131 11 288 297 0 18 chrX 49006446 49006557 -113593373 - LTR67 LTR ERVL -7 550 442 2084 107 7 27 chrX 49006655 49006955 -113592975 - AluSx SINE Alu -18 294 1 1143 127 0 6 chrX 49007003 49007160 -113592770 + AluJb SINE Alu 137 292 -20 2299 73 3 14 chrX 49007394 49007715 -113592215 + AluSq SINE Alu 1 318 0 341 331 41 8 chrX 49007734 49007855 -113592075 - MIR SINE MIR -78 184 60 589 302 0 59 chrX 49007896 49008065 -113591865 + MER91A DNA MER1_type 4 162 -34 485 193 14 151 chrX 49008047 49008126 -113591804 + L2 LINE L2 893 981 -2333 * 2167 84 0 25 chrX 49008126 49008430 -113591500 - AluSc SINE Alu 0 298 2 485 193 14 151 chrX 49008430 49008499 -113591431 + L2 LINE L2 981 1005 -2309 1678 213 116 76 chrX 49008499 49009067 -113590863 + MLT1E LTR MaLR 3 593 0 485 193 14 151 chrX 49009067 49009134 -113590796 + L2 LINE L2 1005 1080 -2234 545 228 8 16 chrX 49009135 49009262 -113590668 + MLT1E LTR MaLR 1 126 -467 852 143 8 0 chrX 49009262 49009381 -113590549 + FLAM_C SINE Alu 1 120 -23 414 0 0 0 chrX 49009381 49009427 -113590503 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1565 189 74 109 chrX 49009427 49009924 -113590006 + MLT1E LTR MaLR 112 591 -2 458 283 115 49 chrX 49009924 49010150 -113589780 + L2 LINE L2 1077 1317 -1997 2269 103 0 0 chrX 49010152 49010443 -113589487 - AluSx SINE Alu -21 291 1 623 213 130 57 chrX 49010449 49010749 -113589181 + L2 LINE L2 1690 2011 -1303 889 284 95 19 chrX 49010784 49011101 -113588829 + L2 LINE L2 2271 2611 -703 2413 80 0 7 chrX 49011102 49011401 -113588529 - AluSx SINE Alu -15 297 1 363 200 0 0 chrX 49011406 49011471 -113588459 - MER92B LTR ERV1 -571 65 1 2260 93 0 4 chrX 49012114 49012423 -113587507 - AluSx SINE Alu 0 310 3 277 189 19 142 chrX 49012504 49012581 -113587349 - MLT1J LTR MaLR -4 507 445 1503 137 82 75 chrX 49012581 49012874 -113587056 - AluJb SINE Alu -17 295 1 277 189 19 142 chrX 49012874 49012902 -113587028 - MLT1J LTR MaLR -66 445 415 2354 101 0 7 chrX 49012909 49013215 -113586715 + AluSc SINE Alu 1 304 -5 1516 151 13 8 chrX 49013250 49013488 -113586442 - AluJb SINE Alu -19 293 55 380 309 24 42 chrX 49013514 49013679 -113586251 - LTR16B LTR ERVL -302 162 1 1318 93 0 0 chrX 49013731 49013892 -113586038 - AluSg/x SINE Alu -18 294 134 2422 98 0 0 chrX 49013892 49014199 -113585731 - AluSx SINE Alu -5 307 1 1363 167 0 16 chrX 49014494 49014739 -113585191 - AluJb SINE Alu -18 294 54 2525 84 7 0 chrX 49015011 49015319 -113584611 - AluSg SINE Alu 0 310 1 2024 117 20 17 chrX 49015505 49015803 -113584127 - AluSx SINE Alu -13 299 1 514 116 21 0 chrX 49015849 49015944 -113583986 + Charlie4 DNA MER1_type 1798 1894 -67 725 120 28 9 chrX 49015947 49016055 -113583875 + AluJb SINE Alu 14 123 -189 937 86 0 0 chrX 49016059 49016176 -113583754 - AluSg/x SINE Alu -14 298 182 289 211 40 13 chrX 49016192 49016268 -113583662 + Charlie4 DNA MER1_type 1877 1954 -7 363 266 4 167 chrX 49016574 49016826 -113583104 + L2 LINE L2 2905 3115 -157 419 200 0 0 chrX 49016833 49016913 -113583017 + MER69 DNA AcHobo 1 80 -2446 * 1111 176 120 14 chrX 49016909 49017268 -113582662 + MER69 DNA AcHobo 1937 2333 -193 957 104 0 15 chrX 49017268 49017402 -113582528 + AluSq/x SINE Alu 1 132 -181 313 214 19 0 chrX 49017406 49017509 -113582421 + MER69 DNA AcHobo 2316 2420 -106 239 32 0 0 chrX 49017533 49017564 -113582366 - L1MB8 LINE L1 -53 6125 6095 1380 148 33 29 chrX 49017691 49017934 -113581996 - AluJo SINE Alu -10 302 59 1158 90 11 43 chrX 49017950 49018138 -113581792 - MLT1B LTR MaLR -208 182 1 968 166 10 25 chrX 49018138 49018337 -113581593 - L1MB8 LINE L1 -97 6081 5886 * 2047 213 28 45 chrX 49018335 49018458 -113581472 - L1M4 LINE L1 -2827 3319 3195 1550 174 60 7 chrX 49018458 49018576 -113581354 + AluJo SINE Alu 1 111 -201 582 28 0 0 chrX 49018576 49018648 -113581282 + (CA)n Simple_repeat Simple_repeat 2 73 0 1550 174 60 7 chrX 49018648 49018810 -113581120 + AluJo SINE Alu 111 296 -16 2075 132 0 0 chrX 49018814 49019124 -113580806 + AluSx SINE Alu 3 312 0 2047 213 28 45 chrX 49019124 49019298 -113580632 - L1M4 LINE L1 -2954 3192 3016 1867 146 0 59 chrX 49019298 49019470 -113580460 - AluJb SINE Alu -8 304 123 195 42 0 0 chrX 49019470 49019494 -113580436 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1941 132 33 0 chrX 49019494 49019766 -113580164 - AluSx SINE Alu -31 281 1 1867 146 0 59 chrX 49019766 49019777 -113580153 - AluJb SINE Alu -188 124 114 2330 103 0 0 chrX 49019777 49020079 -113579851 - AluSx SINE Alu -10 302 1 1867 146 0 59 chrX 49020079 49020216 -113579714 - AluJb SINE Alu -198 114 1 2047 213 28 45 chrX 49020216 49020560 -113579370 - L1M4 LINE L1 -3130 3016 2681 1936 147 26 37 chrX 49020560 49020710 -113579220 + MER2 DNA MER2_type 1 151 -193 1969 132 7 0 chrX 49020710 49020999 -113578931 + AluSg SINE Alu 12 302 -8 1936 147 26 37 chrX 49020999 49021196 -113578734 + MER2 DNA MER2_type 151 344 0 2047 213 28 45 chrX 49021196 49021228 -113578702 - L1M4 LINE L1 -3465 2681 2650 189 281 169 22 chrX 49021237 49021326 -113578604 - MER5A DNA MER1_type -38 151 50 402 274 13 43 chrX 49022074 49022212 -113577718 + MIR SINE MIR 27 143 -65 1061 157 156 0 chrX 49022214 49022493 -113577437 - MER33 DNA MER1_type -1 323 1 191 324 264 20 chrX 49023363 49023764 -113576166 - L2 LINE L2 -665 2649 2151 240 260 14 41 chrX 49023832 49023905 -113576025 - MIR SINE MIR -78 130 60 512 165 62 0 chrX 49024087 49024184 -113575746 - MIR SINE MIR -79 183 81 275 241 131 36 chrX 49025466 49025550 -113574380 - MIR SINE MIR -91 117 25 234 270 86 46 chrX 49026783 49026935 -113572995 - MIR3 SINE MIR -14 194 37 2452 96 0 0 chrX 49027887 49028189 -113571741 - AluSx SINE Alu -10 302 1 314 322 58 8 chrX 49028697 49028818 -113571112 - MIR SINE MIR -100 162 36 449 186 0 12 chrX 49029081 49029167 -113570763 + MIR SINE MIR 168 252 -10 2351 91 3 13 chrX 49029344 49029651 -113570279 - AluSp SINE Alu -9 304 1 504 262 63 0 chrX 49029669 49029795 -113570135 + MIR SINE MIR 57 190 -72 337 202 43 53 chrX 49030565 49030659 -113569271 + MIR SINE MIR 40 132 -76 346 333 17 0 chrX 49031014 49031131 -113568799 + MIR3 SINE MIR 36 154 -54 297 140 40 0 chrX 49031260 49031310 -113568620 + MIR SINE MIR 101 152 -110 334 274 62 9 chrX 49031528 49031641 -113568289 + MIR SINE MIR 13 131 -131 * 369 298 156 37 chrX 49031629 49031847 -113568083 - L2 LINE L2 -1 3271 3028 2279 111 0 3 chrX 49031931 49032229 -113567701 + AluSx SINE Alu 1 297 -15 361 279 90 0 chrX 49032271 49032393 -113567537 + MIR SINE MIR 124 256 -6 2402 95 0 0 chrX 49032454 49032750 -113567180 - AluSx SINE Alu -16 296 1 31 36 0 18 chrX 49032766 49032786 -113567144 + AT_rich Low_complexity Low_complexity 1 20 -35 2104 81 49 14 chrX 49032786 49033071 -113566859 + AluSq SINE Alu 1 295 -18 31 36 0 18 chrX 49033071 49033106 -113566824 + AT_rich Low_complexity Low_complexity 20 55 0 2253 128 0 0 chrX 49033155 49033459 -113566471 + AluJo SINE Alu 6 309 -3 294 267 0 0 chrX 49033474 49033560 -113566370 + L1MC4 LINE L1 7818 7903 -139 2388 99 0 6 chrX 49033631 49033943 -113565987 + AluSg SINE Alu 1 310 0 815 169 7 7 chrX 49033943 49034091 -113565839 + MER5B DNA MER1_type 28 175 -3 574 256 7 151 chrX 49034615 49034737 -113565193 + MIR SINE MIR 2 55 -207 921 106 0 0 chrX 49034737 49034869 -113565061 - FLAM_C SINE Alu 0 133 2 574 256 7 151 chrX 49034869 49035051 -113564879 + MIR SINE MIR 55 262 0 308 252 68 138 chrX 49035133 49035266 -113564664 - L1MC4 LINE L1 -2 8040 7899 1764 146 14 52 chrX 49035266 49035536 -113564394 - MER7A DNA MER2_type -2692 346 94 2351 107 13 0 chrX 49035536 49035835 -113564095 + AluSx SINE Alu 4 306 -6 1764 146 14 52 chrX 49035835 49035926 -113564004 - MER7A DNA MER2_type -2944 94 1 308 252 68 138 chrX 49035926 49036264 -113563666 - L1MC4 LINE L1 -143 7899 7602 296 231 51 0 chrX 49037114 49037192 -113562738 + MIR SINE MIR 71 152 -110 2518 82 0 0 chrX 49037793 49038096 -113561834 - AluSg SINE Alu -7 303 1 532 154 27 0 chrX 49038346 49038456 -113561474 + L1ME4a LINE L1 6006 6118 -3 227 326 125 14 chrX 49038475 49038619 -113561311 + L1ME4a LINE L1 5603 5762 -359 719 257 140 9 chrX 49038654 49038989 -113560941 + L1ME4a LINE L1 5743 6121 0 261 279 71 29 chrX 49039286 49039426 -113560504 + L2 LINE L2 2661 2806 -508 2356 90 27 0 chrX 49039432 49039731 -113560199 + AluSx SINE Alu 1 307 -5 329 259 60 97 chrX 49039797 49040013 -113559917 + L2 LINE L2 2970 3177 -95 445 283 81 7 chrX 49040043 49040221 -113559709 - MIR SINE MIR -54 208 16 467 45 15 0 chrX 49041071 49041137 -113558793 + MER41A LTR ERV1 400 466 -88 1093 52 0 37 chrX 49041150 49041286 -113558644 + AluYb8 SINE Alu 1 131 -187 189 26 51 26 chrX 49041286 49041325 -113558605 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 2286 107 3 0 chrX 49041326 49041624 -113558306 + AluSc SINE Alu 1 299 -10 2173 104 0 3 chrX 49041626 49041956 -113557974 + AluSc SINE Alu 1 329 0 906 209 16 5 chrX 49042018 49042209 -113557721 - MIR SINE MIR 0 262 70 2498 84 0 0 chrX 49042486 49042796 -113557134 + AluSg SINE Alu 1 310 0 1190 238 243 60 chrX 49043523 49043552 -113556378 + L2 LINE L2 1963 1985 -1328 2432 88 3 0 chrX 49043552 49043857 -113556073 - AluSx SINE Alu -6 306 1 1190 238 243 60 chrX 49043857 49043928 -113556002 + L2 LINE L2 1985 2042 -1271 2334 110 0 0 chrX 49043928 49044228 -113555702 - AluSg SINE Alu -10 300 1 1190 238 243 60 chrX 49044228 49045113 -113554817 + L2 LINE L2 2042 3153 -160 1065 134 0 0 chrX 49045118 49045292 -113554638 - AluSg/x SINE Alu 0 307 134 2507 72 3 3 chrX 49045293 49045598 -113554332 - AluSx SINE Alu -7 305 1 578 204 32 38 chrX 49045600 49045757 -113554173 + L2 LINE L2 3149 3304 -9 198 0 0 0 chrX 49045759 49045781 -113554149 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 188 340 146 0 chrX 49047300 49047403 -113552527 - L2 LINE L2 -18 3254 3137 215 242 44 88 chrX 49047611 49047702 -113552228 - L2 LINE L2 -573 2741 2655 351 305 42 80 chrX 49047719 49047860 -113552070 + L2 LINE L2 2983 3115 -157 930 196 44 78 chrX 49047860 49047908 -113552022 - MIR SINE MIR 0 262 214 2527 72 7 0 chrX 49047908 49048214 -113551716 - AluY SINE Alu -3 308 1 930 196 44 78 chrX 49048214 49048436 -113551494 - MIR SINE MIR -48 214 1 351 305 42 80 chrX 49048436 49048507 -113551423 + L2 LINE L2 3115 3187 -85 2258 119 3 3 chrX 49048511 49048821 -113551109 - AluSx SINE Alu -2 310 1 420 224 103 9 chrX 49049501 49049617 -113550313 - L2 LINE L2 0 3313 3187 519 279 67 22 chrX 49050299 49050478 -113549452 + MIR SINE MIR 2 188 -74 209 139 14 178 chrX 49050990 49051075 -113548855 - MIR SINE MIR -69 139 74 243 103 0 0 chrX 49051227 49051266 -113548664 + (TCC)n Simple_repeat Simple_repeat 1 39 0 1776 90 0 0 chrX 49051980 49052192 -113547738 + AluSc SINE Alu 87 298 -11 1984 172 0 0 chrX 49053161 49053469 -113546461 + AluJb SINE Alu 1 308 -4 1096 215 57 79 chrX 49054656 49054868 -113545062 - MER2 DNA MER2_type 0 345 143 2209 98 17 0 chrX 49054868 49055155 -113544775 + AluSx SINE Alu 1 292 -20 1096 215 57 79 chrX 49055155 49055295 -113544635 - MER2 DNA MER2_type -202 143 1 279 247 14 0 chrX 49056401 49056474 -113543456 - MIR SINE MIR -63 145 72 2343 87 10 0 chrX 49056951 49057277 -113542653 + AluSp SINE Alu 1 313 0 1757 183 7 0 chrX 49057523 49057813 -113542117 - AluJo SINE Alu -16 296 5 794 181 0 0 chrX 49058004 49058137 -113541793 - FLAM_A SINE Alu 0 133 1 427 149 33 159 chrX 49058565 49058599 -113541331 - MER53 DNA DNA 0 189 152 2327 102 3 0 chrX 49058599 49058894 -113541036 - AluSq SINE Alu -17 296 1 427 149 33 159 chrX 49058894 49059003 -113540927 - MER53 DNA DNA -37 152 79 2291 97 0 0 chrX 49059003 49059292 -113540638 + AluSg SINE Alu 1 289 -21 427 149 33 159 chrX 49059292 49059361 -113540569 - MER53 DNA DNA -110 79 3 458 305 7 14 chrX 49059674 49059815 -113540115 + MIR SINE MIR 18 157 -105 288 229 14 0 chrX 49060550 49060620 -113539310 + MIR SINE MIR 66 136 -72 621 233 5 85 chrX 49061668 49061814 -113538116 - Charlie8 DNA MER1_type -65 265 136 2366 109 0 0 chrX 49061814 49062117 -113537813 - AluSx SINE Alu -9 303 1 621 233 5 85 chrX 49062117 49062159 -113537771 - Charlie8 DNA MER1_type -194 136 92 601 238 153 16 chrX 49062573 49062762 -113537168 - MIR SINE MIR -19 243 29 321 155 0 0 chrX 49063380 49063438 -113536492 + (CA)n Simple_repeat Simple_repeat 1 58 0 237 261 51 14 chrX 49063853 49063991 -113535939 + (CAGAGA)n Simple_repeat Simple_repeat 2 144 0 564 246 40 35 chrX 49064069 49064288 -113535642 - MIR SINE MIR -12 250 26 230 293 12 37 chrX 49064487 49064569 -113535361 + G-rich Low_complexity Low_complexity 2 81 0 301 362 73 15 chrX 49064777 49065106 -113534824 + L2 LINE L2 2258 2605 -709 834 271 159 17 chrX 49065267 49065618 -113534312 + L2 LINE L2 2872 3272 0 206 303 53 0 chrX 49065714 49065790 -113534140 - MIR SINE MIR -69 139 60 1922 164 0 7 chrX 49066631 49066936 -113532994 - AluJo SINE Alu -9 303 1 2568 62 0 0 chrX 49066946 49067237 -113532693 - AluSc SINE Alu -17 292 2 2174 136 0 10 chrX 49067245 49067419 -113532511 - AluSx SINE Alu -5 307 136 2476 68 3 0 chrX 49067419 49067711 -113532219 - AluSc SINE Alu -16 293 1 2174 136 0 10 chrX 49067711 49067846 -113532084 - AluSx SINE Alu -176 136 1 2234 106 13 19 chrX 49067872 49068184 -113531746 + AluSg SINE Alu 1 310 0 985 144 0 0 chrX 49068196 49068335 -113531595 - AluSg/x SINE Alu -37 275 137 262 276 53 0 chrX 49068534 49068610 -113531320 + L2 LINE L2 2222 2301 -1013 6144 87 16 14 chrX 49068612 49068833 -113531097 + L1PA15 LINE L1 4488 4707 -1458 2301 94 0 0 chrX 49068833 49069151 -113530779 + AluSx SINE Alu 1 318 0 2505 68 0 19 chrX 49069156 49069465 -113530465 + AluSg SINE Alu 8 310 0 2465 65 0 0 chrX 49069469 49069784 -113530146 + AluY SINE Alu 1 311 0 6144 87 16 14 chrX 49069784 49070465 -113529465 + L1PA15 LINE L1 4712 5390 -775 2092 104 48 10 chrX 49070465 49070754 -113529176 + AluSx SINE Alu 1 300 -12 6144 87 16 14 chrX 49070754 49071518 -113528412 + L1PA15 LINE L1 5390 6162 -3 533 176 117 88 chrX 49071518 49071757 -113528173 + L1ME4a LINE L1 5776 6021 -100 834 303 62 26 chrX 49071782 49072251 -113527679 + L2 LINE L2 2288 2773 -541 385 294 65 13 chrX 49072798 49072951 -113526979 - MER5B DNA MER1_type -1 177 17 24 32 0 0 chrX 49073849 49073880 -113526050 + AT_rich Low_complexity Low_complexity 1 31 0 362 250 80 30 chrX 49073948 49074048 -113525882 - MIR SINE MIR -65 143 39 180 219 0 0 chrX 49074356 49074397 -113525533 - L2 LINE L2 -2 3311 3271 1343 268 48 22 chrX 49074417 49074831 -113525099 - L2 LINE L2 -3 3310 2886 182 345 42 81 chrX 49075396 49075680 -113524250 + L2 LINE L2 967 1239 -2075 959 213 54 5 chrX 49075695 49075916 -113524014 + MIR SINE MIR 20 251 -11 201 175 0 0 chrX 49076769 49076809 -113523121 + (CAG)n Simple_repeat Simple_repeat 1 40 0 37 52 0 0 chrX 49076839 49076897 -113523033 + GC_rich Low_complexity Low_complexity 1 58 0 243 88 0 0 chrX 49077117 49077151 -113522779 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 1694 298 189 54 chrX 49077685 49078395 -113521535 + L2 LINE L2 994 1606 -1666 2035 89 79 7 chrX 49078395 49078675 -113521255 - AluSg SINE Alu -10 300 1 1694 298 189 54 chrX 49078675 49078904 -113521026 + L2 LINE L2 1606 1803 -1469 1890 112 0 0 chrX 49078904 49079154 -113520776 - AluSx SINE Alu -7 305 56 1694 298 189 54 chrX 49079154 49079676 -113520254 + L2 LINE L2 1803 2253 -1019 2329 84 20 0 chrX 49079676 49079974 -113519956 + AluSx SINE Alu 1 304 -8 189 0 0 0 chrX 49079974 49079995 -113519935 + (TA)n Simple_repeat Simple_repeat 2 22 0 1694 298 189 54 chrX 49079995 49080267 -113519663 + L2 LINE L2 2252 3022 -250 804 273 60 76 chrX 49080264 49080840 -113519090 - L2 LINE L2 -6 3307 2742 * 2264 85 7 0 chrX 49080911 49081192 -113518738 + AluSx SINE Alu 1 283 -29 258 161 145 73 chrX 49081202 49081326 -113518604 - MER112 DNA MER1_type -90 170 38 1467 270 162 24 chrX 49081363 49082004 -113517926 - L2 LINE L2 -565 2749 1979 2753 39 0 0 chrX 49082004 49082311 -113517619 + AluY SINE Alu 3 309 -2 1467 270 162 24 chrX 49082311 49082454 -113517476 - L2 LINE L2 -1335 1979 1857 603 177 76 15 chrX 49082454 49082611 -113517319 + L1ME3A LINE L1 5488 5656 -514 2687 110 116 13 chrX 49082611 49083084 -113516846 + Charlie1b DNA MER1_type 1 522 -1 518 244 150 53 chrX 49083099 49083201 -113516729 + L1ME3A LINE L1 5660 5751 -419 2207 92 14 3 chrX 49083201 49083493 -113516437 - AluSq SINE Alu -18 295 1 518 244 150 53 chrX 49083493 49083656 -113516274 + L1ME3A LINE L1 5751 5951 -219 35 63 0 0 chrX 49083870 49083933 -113515997 + AT_rich Low_complexity Low_complexity 1 63 0 222 306 200 44 chrX 49084008 49084167 -113515763 - L2 LINE L2 -1500 1814 1681 267 31 0 0 chrX 49084167 49084199 -113515731 + (GA)n Simple_repeat Simple_repeat 2 33 0 222 306 200 44 chrX 49084199 49084399 -113515531 - L2 LINE L2 -1633 1681 1399 1060 196 75 8 chrX 49084407 49084437 -113515493 - MER69 DNA AcHobo -306 2220 2193 2105 119 7 0 chrX 49084437 49084732 -113515198 + AluJo SINE Alu 1 297 -15 1060 196 75 8 chrX 49084732 49084967 -113514963 - MER69 DNA AcHobo -333 2193 1937 525 165 0 0 chrX 49084964 49085043 -113514887 - MER69 DNA AcHobo -2447 79 1 * 236 280 38 89 chrX 49085060 49085217 -113514713 + L2 LINE L2 3030 3178 -94 442 267 62 6 chrX 49085444 49085605 -113514325 + MIR SINE MIR 81 250 -12 269 330 11 0 chrX 49085612 49085703 -113514227 - L2 LINE L2 -35 3237 3146 2463 80 3 0 chrX 49085804 49086104 -113513826 - AluSx SINE Alu -11 301 1 239 315 16 8 chrX 49086175 49086302 -113513628 + CT-rich Low_complexity Low_complexity 2 129 0 2275 98 27 0 chrX 49086417 49086712 -113513218 - AluSx SINE Alu -9 303 1 675 200 162 9 chrX 49087230 49087440 -113512490 + MIR SINE MIR 10 251 -11 252 0 0 0 chrX 49087596 49087624 -113512306 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2149 103 0 4 chrX 49087624 49087905 -113512025 - AluSx SINE Alu -32 280 1 231 156 0 0 chrX 49087928 49087973 -113511957 - L1MA4 LINE L1 -5 6295 6251 2520 60 3 3 chrX 49087974 49088273 -113511657 - AluY SINE Alu -12 299 1 1043 153 18 0 chrX 49088276 49088446 -113511484 - AluSg/x SINE Alu -19 291 119 1804 110 4 0 chrX 49088455 49088701 -113511229 - AluSx SINE Alu -7 305 59 615 183 0 186 chrX 49088801 49088953 -113510977 - L1M4 LINE L1 -1757 4389 4301 1784 153 0 0 chrX 49088953 49089227 -113510703 - AluJb SINE Alu -13 299 26 615 183 0 186 chrX 49089227 49089326 -113510604 - L1M4 LINE L1 -1845 4301 4185 1330 160 34 96 chrX 49089326 49089457 -113510473 - MLT1B LTR MaLR 0 390 253 2490 73 6 13 chrX 49089457 49089771 -113510159 - AluSq SINE Alu 0 313 2 1330 160 34 96 chrX 49089771 49090141 -113509789 - MLT1B LTR MaLR -137 253 1 2141 203 4 49 chrX 49090141 49090668 -113509262 - L1M4 LINE L1 -1961 4185 3683 268 286 48 0 chrX 49090678 49090762 -113509168 + L1ME LINE L1 5696 5783 -338 5883 145 27 6 chrX 49090928 49092047 -113507883 - L1MA5 LINE L1 0 6300 5155 2331 103 0 0 chrX 49092047 49092339 -113507591 - AluSx SINE Alu -19 293 2 1764 219 31 8 chrX 49092356 49092872 -113507058 - L1MA5 LINE L1 -2814 3332 2805 686 100 8 92 chrX 49092876 49093006 -113506924 - L1PB1 LINE L1 -2 6149 6031 1561 134 0 4 chrX 49093517 49093749 -113506181 - AluSx SINE Alu -81 231 1 1099 287 30 55 chrX 49093774 49094064 -113505866 + L1MC4a LINE L1 7280 7551 -257 1824 135 99 0 chrX 49094064 49094346 -113505584 + AluSx SINE Alu 2 311 -1 1099 287 30 55 chrX 49094346 49094598 -113505332 + L1MC4a LINE L1 7551 7808 0 1387 159 69 24 chrX 49094601 49094692 -113505238 + AluJo SINE Alu 1 86 -226 2219 86 7 23 chrX 49094692 49094996 -113504934 - AluSq SINE Alu -14 299 1 1387 159 69 24 chrX 49094996 49095194 -113504736 + AluJo SINE Alu 86 303 -9 724 170 28 0 chrX 49095424 49095565 -113504365 + MER5A DNA MER1_type 44 188 -1 1821 151 3 7 chrX 49095821 49096113 -113503817 + AluJb SINE Alu 1 291 -21 726 245 39 52 chrX 49096168 49096479 -113503451 - L1ME3A LINE L1 -232 5938 5633 265 250 60 12 chrX 49096523 49096607 -113503323 - L1ME3A LINE L1 -536 5634 5547 281 288 64 24 chrX 49096620 49096745 -113503185 - L1ME3A LINE L1 -1014 5132 5003 286 271 42 21 chrX 49096752 49096848 -113503082 - L1P LINE L1 -1172 4974 4877 357 296 82 72 chrX 49096863 49097194 -113502736 - L2 LINE L2 0 3272 2939 2275 102 7 0 chrX 49100739 49101044 -113498886 - AluSx SINE Alu -5 307 1 302 172 0 17 chrX 49101167 49101225 -113498705 - MIR SINE MIR -63 145 89 1113 114 0 30 chrX 49101322 49101488 -113498442 + AluSg/x SINE Alu 152 312 0 947 108 0 0 chrX 49101728 49101848 -113498082 - AluSq/x SINE Alu -193 120 1 897 172 25 19 chrX 49102107 49102264 -113497666 - AluJo SINE Alu -152 160 3 351 333 72 39 chrX 49102287 49102620 -113497310 - L2 LINE L2 -2804 510 167 220 241 27 32 chrX 49102693 49102775 -113497155 - MIR SINE MIR -83 125 41 2413 86 0 0 chrX 49103201 49103502 -113496428 - AluSg SINE Alu -9 301 1 25 0 0 0 chrX 49103512 49103537 -113496393 + AT_rich Low_complexity Low_complexity 1 25 0 1472 127 8 66 chrX 49103850 49104015 -113495915 - AluSg/x SINE Alu -12 300 152 1945 72 0 4 chrX 49104015 49104251 -113495679 - AluSx SINE Alu -15 297 63 1472 127 8 66 chrX 49104251 49104329 -113495601 - AluSg/x SINE Alu -160 152 71 1055 98 0 0 chrX 49104329 49104462 -113495468 - AluSq/x SINE Alu -179 133 1 2226 118 0 0 chrX 49104588 49104885 -113495045 + AluSx SINE Alu 1 297 -15 228 200 0 0 chrX 49104887 49104937 -113494993 + GA-rich Low_complexity Low_complexity 3 52 0 273 294 29 59 chrX 49105032 49105112 -113494818 - HAL1 LINE L1 -1065 1442 1361 1721 166 30 17 chrX 49105112 49105408 -113494522 - AluJo SINE Alu -12 300 1 273 294 29 59 chrX 49105408 49105633 -113494297 - HAL1 LINE L1 -1146 1361 1146 908 169 136 104 chrX 49105714 49105993 -113493937 - AluJo SINE Alu -13 289 2 1134 137 98 0 chrX 49106085 49106289 -113493641 + AluSg/x SINE Alu 70 293 -17 256 233 225 17 chrX 49107397 49107517 -113492413 - MIR SINE MIR -99 163 19 897 189 5 16 chrX 49107668 49107853 -113492077 - MER5A DNA MER1_type -5 184 2 271 320 155 34 chrX 49108501 49108734 -113491196 + L2 LINE L2 1837 2113 -1201 2268 117 7 0 chrX 49108734 49109042 -113490888 - AluSq SINE Alu -3 310 1 271 320 155 34 chrX 49109042 49109099 -113490831 + L2 LINE L2 2113 2162 -1152 216 162 0 0 chrX 49109607 49109644 -113490286 + GA-rich Low_complexity Low_complexity 1 37 0 2069 36 0 12 chrX 49110181 49110434 -113489496 - L1PA5 LINE L1 -2 6152 5903 4434 35 7 4 chrX 49110553 49111092 -113488838 - L1PA4 LINE L1 -211 5944 5404 291 323 49 49 chrX 49111874 49112097 -113487833 + MIR SINE MIR 20 242 -20 2144 117 3 29 chrX 49112714 49113021 -113486909 - AluSq SINE Alu -14 299 1 2118 121 0 0 chrX 49113151 49113459 -113486471 - AluSx SINE Alu 0 308 1 1715 143 70 28 chrX 49113463 49113750 -113486180 - AluSx SINE Alu -13 299 1 268 275 0 0 chrX 49114044 49114113 -113485817 - L1ME4a LINE L1 -104 6017 5949 1645 157 0 42 chrX 49114116 49114402 -113485528 - AluJo SINE Alu -35 277 4 764 240 126 82 chrX 49114689 49115124 -113484806 - L1MC4a LINE L1 -686 5470 5373 1788 168 10 10 chrX 49115124 49115415 -113484515 - AluJo SINE Alu -21 291 1 764 240 126 82 chrX 49115415 49115495 -113484435 - L1MC4a LINE L1 -783 5373 5298 627 324 82 62 chrX 49115627 49116106 -113483824 - L2 LINE L2 -831 2483 2015 1968 182 28 8 chrX 49116106 49116464 -113483466 - MLT1A1 LTR MaLR 0 365 1 627 324 82 62 chrX 49116464 49116907 -113483023 - L2 LINE L2 -1299 2015 1542 21 36 0 0 chrX 49117384 49117412 -113482518 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 49117712 49117733 -113482197 + AT_rich Low_complexity Low_complexity 1 21 0 185 222 0 44 chrX 49118039 49118084 -113481846 + L2 LINE L2 3215 3257 -15 1258 98 0 0 chrX 49118162 49118325 -113481605 + AluSg/x SINE Alu 138 300 -12 3056 159 38 5 chrX 49118523 49119076 -113480854 + L1MB5 LINE L1 5566 6136 -38 13294 192 32 25 chrX 49119093 49125675 -113474255 + L1PB1 LINE L1 6 6866 -1 885 263 25 4 chrX 49126011 49126289 -113473641 - L1ME3A LINE L1 -222 5948 5665 304 204 0 0 chrX 49126289 49126303 -113473627 + MER3 DNA MER1_type 34 47 -162 286 115 39 58 chrX 49126303 49126355 -113473575 - MER3 DNA MER1_type 0 209 159 1537 196 31 12 chrX 49126355 49126676 -113473254 - L1MC4 LINE L1 -966 7076 6750 1351 34 17 0 chrX 49126897 49127073 -113472857 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1948 164 0 0 chrX 49127125 49127423 -113472507 + AluJb SINE Alu 1 298 -14 857 188 32 13 chrX 49127423 49127577 -113472353 + AluJo/FRAM SINE Alu 134 290 -22 1151 236 36 0 chrX 49127578 49127854 -113472076 - L1ME3 LINE L1 -108 6054 5769 746 272 54 4 chrX 49129122 49129361 -113470569 - MIR SINE MIR -1 261 11 205 27 81 0 chrX 49129382 49129419 -113470511 + T-rich Low_complexity Low_complexity 2 41 0 726 233 11 138 chrX 49129465 49129899 -113470031 + L2 LINE L2 2899 3277 -36 1765 141 47 7 chrX 49129924 49130200 -113469730 - AluJb SINE Alu -25 287 1 327 195 12 37 chrX 49130211 49130293 -113469637 - L1MC4 LINE L1 0 8042 7963 2833 187 40 8 chrX 49130376 49131001 -113468929 - L1MC4 LINE L1 -526 7516 6872 2017 244 29 61 chrX 49131001 49131562 -113468368 - MLT1E LTR MaLR 0 593 51 2551 248 56 19 chrX 49131642 49132469 -113467461 + L1ME1 LINE L1 5307 6067 -99 841 200 87 10 chrX 49132483 49132678 -113467252 + L1MDa LINE L1 1 210 -6330 3337 168 30 14 chrX 49132682 49133337 -113466593 - L1MB8 LINE L1 -1 6177 5512 3286 196 73 52 chrX 49133339 49133542 -113466388 + L1MDa LINE L1 805 1002 -5538 2453 93 3 0 chrX 49133542 49133854 -113466076 + AluSp SINE Alu 1 313 0 3286 196 73 52 chrX 49133854 49134632 -113465298 + L1MDa LINE L1 1002 1807 -4733 2003 297 99 29 chrX 49134659 49135820 -113464110 - L1MCb LINE L1 -4546 2018 732 232 135 0 0 chrX 49135820 49135857 -113464073 + L1MDa LINE L1 1936 1972 -4568 * 252 219 115 10 chrX 49135854 49135950 -113463980 + L1MDa LINE L1 2438 2543 -3997 * 20985 159 26 23 chrX 49135933 49141251 -113458679 + L1M1 LINE L1 2 5354 -2211 1981 154 3 0 chrX 49141251 49141549 -113458381 - AluJb SINE Alu -11 301 3 20985 159 26 23 chrX 49141549 49142478 -113457452 + L1M1 LINE L1 5354 6278 -1287 231 147 0 0 chrX 49142692 49142726 -113457204 - Alu SINE Alu -269 34 1 2215 102 3 0 chrX 49142884 49143169 -113456761 - AluSx SINE Alu -26 286 1 371 197 51 60 chrX 49143178 49143295 -113456635 - L1MC/D LINE L1 -1990 5818 5703 2084 150 0 0 chrX 49143296 49143589 -113456341 + AluSx SINE Alu 1 293 -19 180 219 38 114 chrX 49144510 49144615 -113455315 - MIR SINE MIR -67 141 45 1840 122 0 64 chrX 49145306 49145602 -113454328 + AluSx SINE Alu 17 293 -19 277 200 12 47 chrX 49145905 49146026 -113453904 + (CAGAGA)n Simple_repeat Simple_repeat 1 116 0 270 0 0 0 chrX 49146079 49146109 -113453821 + (GA)n Simple_repeat Simple_repeat 1 30 0 265 229 37 83 chrX 49147185 49147294 -113452636 - MIR SINE MIR -74 134 31 745 214 50 41 chrX 49148833 49149053 -113450877 + MIR SINE MIR 41 262 0 223 258 30 0 chrX 49149372 49149405 -113450525 + MIR SINE MIR 85 116 -92 1934 175 0 3 chrX 49149405 49149714 -113450216 - AluSx SINE Alu -4 308 1 223 258 30 0 chrX 49149714 49149746 -113450184 + MIR SINE MIR 116 152 -56 192 239 28 28 chrX 49150166 49150237 -113449693 - MIR SINE MIR -81 181 111 2052 131 0 3 chrX 49150864 49151187 -113448743 - AluSx SINE Alu 0 322 1 2084 113 12 44 chrX 49151334 49151654 -113448276 - AluSx SINE Alu -2 310 1 2105 113 42 55 chrX 49152004 49152384 -113447546 - THE1C LTR MaLR 0 375 1 690 129 0 0 chrX 49152451 49152552 -113447378 - AluS SINE Alu -210 102 2 2287 105 0 3 chrX 49152772 49153066 -113446864 + AluSx SINE Alu 1 293 -19 1262 134 4 101 chrX 49153207 49153299 -113446631 - AluJo SINE Alu -86 226 127 2273 115 3 0 chrX 49153299 49153603 -113446327 - AluSx SINE Alu -7 305 1 1262 134 4 101 chrX 49153603 49153757 -113446173 - AluJo SINE Alu -185 127 4 2261 94 14 0 chrX 49153765 49154051 -113445879 - AluSc SINE Alu -19 290 1 251 226 148 9 chrX 49154103 49154218 -113445712 - MIR SINE MIR -117 145 15 1787 113 0 0 chrX 49154595 49154826 -113445104 - AluSq SINE Alu -82 231 1 1032 162 32 11 chrX 49154929 49155114 -113444816 - MER5A DNA MER1_type 0 189 1 335 370 0 8 chrX 49155545 49155672 -113444258 - MIR SINE MIR -117 145 20 193 222 8 162 chrX 49155849 49155966 -113443964 - L2 LINE L2 -173 3099 3001 2104 72 15 104 chrX 49156628 49156963 -113442967 + AluSq SINE Alu 1 305 -8 2225 88 4 0 chrX 49157942 49158215 -113441715 - AluSq SINE Alu -39 274 1 1171 139 0 0 chrX 49158513 49158679 -113441251 + AluSg/x SINE Alu 134 299 -13 184 237 0 17 chrX 49158801 49158860 -113441070 - MIR SINE MIR -10 252 195 255 231 185 0 chrX 49159086 49159151 -113440779 + Tigger5 DNA MER2_type 1 77 -2246 313 193 0 0 chrX 49159152 49159209 -113440721 - Tigger5 DNA MER2_type -3 2320 2264 1875 170 6 6 chrX 49159371 49159683 -113440247 + AluJb SINE Alu 1 312 0 1088 201 41 22 chrX 49159778 49160047 -113439883 - L1ME1 LINE L1 -8 6158 5885 2308 224 63 45 chrX 49160069 49160267 -113439663 - L1ME1 LINE L1 -19 6147 5954 2362 88 0 10 chrX 49160267 49160575 -113439355 - AluSg SINE Alu -5 305 1 2308 224 63 45 chrX 49160575 49160593 -113439337 - L1ME1 LINE L1 -212 5954 5938 2222 129 0 3 chrX 49160593 49160904 -113439026 - AluSx SINE Alu -2 310 1 2308 224 63 45 chrX 49160904 49161355 -113438575 - L1ME1 LINE L1 -228 5938 5467 24 32 0 0 chrX 49161355 49161386 -113438544 + AT_rich Low_complexity Low_complexity 1 31 0 824 153 0 0 chrX 49161386 49161504 -113438426 - FLAM_C SINE Alu -25 118 1 613 169 192 0 chrX 49161518 49161690 -113438240 - L1ME1 LINE L1 -2584 5458 5254 2068 142 24 0 chrX 49161694 49161990 -113437940 - AluSx SINE Alu -9 303 1 227 109 0 65 chrX 49162066 49162112 -113437818 - L1MB2 LINE L1 -2 6169 6127 462 34 85 0 chrX 49162112 49162171 -113437759 + THE1C LTR MaLR 1 64 -311 1003 83 0 0 chrX 49162173 49162305 -113437625 - L1P4 LINE L1 -377 5788 5657 1844 176 59 0 chrX 49162311 49162652 -113437278 - L1MB3 LINE L1 -144 6039 5679 911 155 14 0 chrX 49162659 49162801 -113437129 - FRAM SINE Alu -26 150 7 1045 213 21 17 chrX 49162808 49163047 -113436883 - L1ME1 LINE L1 -1005 5141 4902 * 2720 206 85 93 chrX 49163041 49163234 -113436696 - L1ME1 LINE L1 -1849 4297 4104 2457 83 3 0 chrX 49163234 49163534 -113436396 + AluSp SINE Alu 1 301 -12 2720 206 85 93 chrX 49163534 49163835 -113436095 - L1ME1 LINE L1 -2042 4104 3802 2460 86 0 0 chrX 49163835 49164136 -113435794 - AluSg SINE Alu -9 301 1 2720 206 85 93 chrX 49164136 49164163 -113435767 - L1ME1 LINE L1 -2344 3802 3776 2393 180 13 59 chrX 49164163 49164423 -113435507 - MLT1D LTR MaLR 0 505 280 2269 90 0 10 chrX 49164423 49164722 -113435208 - AluSg SINE Alu -14 296 1 2393 180 13 59 chrX 49164722 49164990 -113434940 - MLT1D LTR MaLR -225 280 1 2720 206 85 93 chrX 49164990 49165653 -113434277 - L1ME1 LINE L1 -2370 3776 3120 2019 251 8 2 chrX 49165686 49166185 -113433745 - L1ME1 LINE L1 -3261 2885 2384 5647 217 109 4 chrX 49166298 49167089 -113432841 - L1M2 LINE L1 -5516 1333 372 182 37 37 0 chrX 49167089 49167116 -113432814 + (CTG)n Simple_repeat Simple_repeat 2 29 0 5647 217 109 4 chrX 49167116 49167528 -113432402 - L1M2 LINE L1 -6477 372 4 3125 200 43 6 chrX 49167535 49168340 -113431590 + L1MA3 LINE L1 2920 3754 -2392 1544 166 26 19 chrX 49168339 49168417 -113431513 + L1MA3 LINE L1 5470 5546 -766 * 2034 97 48 14 chrX 49168417 49168706 -113431224 + AluSx SINE Alu 1 299 -13 1544 166 26 19 chrX 49168706 49168935 -113430995 + L1MA3 LINE L1 5546 5779 -533 264 226 75 0 chrX 49168941 49168994 -113430936 + Tigger3(Golem) DNA MER2_type 8 64 -2965 819 162 6 18 chrX 49168994 49169161 -113430769 + L1MA3 LINE L1 6141 6305 0 847 154 21 0 chrX 49169170 49169313 -113430617 + AluJb SINE Alu 1 146 -166 701 86 19 19 chrX 49169314 49169419 -113430511 + AluSg/x SINE Alu 196 300 -12 645 139 19 9 chrX 49169449 49169557 -113430373 - L1 LINE L1 -2109 4037 3929 2074 131 7 3 chrX 49169558 49169849 -113430081 + AluJb SINE Alu 1 292 -20 1708 184 17 33 chrX 49169853 49170007 -113429923 + L1MD1 LINE L1 4975 5130 -1180 2278 91 0 3 chrX 49170007 49170326 -113429604 + AluSq SINE Alu 1 318 0 1708 184 17 33 chrX 49170326 49170618 -113429312 + L1MD1 LINE L1 5130 5418 -892 2333 103 0 0 chrX 49170618 49170918 -113429012 + AluSx SINE Alu 1 300 -12 1708 184 17 33 chrX 49170918 49171066 -113428864 + L1MD1 LINE L1 5418 5567 -743 2526 163 14 12 chrX 49171066 49171490 -113428440 - MSTB1 LTR MaLR -7 425 1 3007 183 60 14 chrX 49171491 49171970 -113427960 + L1MD1 LINE L1 5563 6018 -224 1777 155 7 17 chrX 49171970 49172261 -113427669 + AluJo SINE Alu 5 292 -20 3007 183 60 14 chrX 49172261 49172420 -113427510 + L1MD1 LINE L1 6018 6234 -8 2394 99 0 6 chrX 49172420 49172732 -113427198 + AluSx SINE Alu 1 310 -2 6368 33 0 1 chrX 49172752 49173503 -113426427 + L1PA4 LINE L1 5406 6155 0 1637 111 0 0 chrX 49173523 49173739 -113426191 + AluSx SINE Alu 1 216 -96 1429 158 63 53 chrX 49173944 49174228 -113425702 + AluJo SINE Alu 1 287 -25 1420 239 142 20 chrX 49174250 49175311 -113424619 + L1ME1 LINE L1 4964 6149 -17 476 251 141 25 chrX 49175318 49175601 -113424329 + L1MEc LINE L1 1629 1944 -4452 1864 143 7 10 chrX 49175601 49175894 -113424036 + AluJo SINE Alu 1 292 -20 2491 144 61 4 chrX 49175895 49176354 -113423576 + L1MA9 LINE L1 5823 6307 -5 2239 149 15 2 chrX 49176368 49176764 -113423166 + L1MB3 LINE L1 5783 6183 0 828 257 93 67 chrX 49176764 49176878 -113423052 + L1MEc LINE L1 2120 2230 -3985 1743 158 49 0 chrX 49176878 49177162 -113422768 + AluSx SINE Alu 1 298 -14 828 257 93 67 chrX 49177162 49177594 -113422336 + L1MEc LINE L1 2230 2686 -3529 682 227 26 81 chrX 49177752 49177974 -113421956 - L1M4 LINE L1 -2449 3697 3491 2240 125 0 3 chrX 49177974 49178285 -113421645 - AluSx SINE Alu -2 310 1 682 227 26 81 chrX 49178285 49178335 -113421595 - L1M4 LINE L1 -2655 3491 3440 2241 105 16 7 chrX 49178360 49178666 -113421264 - AluSx SINE Alu -3 309 1 2396 76 3 0 chrX 49178935 49179225 -113420705 - AluSq SINE Alu -21 292 2 2015 143 10 0 chrX 49180026 49180319 -113419611 + AluJb SINE Alu 1 296 -16 794 134 0 52 chrX 49180327 49180461 -113419469 + FLAM_C SINE Alu 1 127 -6 1800 145 18 11 chrX 49180472 49180755 -113419175 + AluJb SINE Alu 1 285 -27 1194 169 38 0 chrX 49180932 49181168 -113418762 + L1MA4 LINE L1 6011 6255 -45 1603 156 14 27 chrX 49181172 49181467 -113418463 + AluJo SINE Alu 5 295 -17 1892 120 6 79 chrX 49181492 49181628 -113418302 + AluSx SINE Alu 1 145 -167 2194 116 7 0 chrX 49181628 49181931 -113417999 + AluSx SINE Alu 1 305 -7 1892 120 6 79 chrX 49181931 49182110 -113417820 + AluSx SINE Alu 145 293 -19 2484 60 3 3 chrX 49182113 49182412 -113417518 + AluY SINE Alu 1 299 -12 25 31 0 0 chrX 49182449 49182481 -113417449 + AT_rich Low_complexity Low_complexity 1 32 0 2110 103 0 4 chrX 49182481 49182762 -113417168 + AluSx SINE Alu 1 280 -32 252 0 0 0 chrX 49182762 49182790 -113417140 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 754 200 162 9 chrX 49182946 49183156 -113416774 - MIR SINE MIR -11 251 10 2257 98 27 0 chrX 49183674 49183969 -113415961 + AluSx SINE Alu 1 303 -9 239 315 16 8 chrX 49184084 49184211 -113415719 + GA-rich Low_complexity Low_complexity 2 129 0 2410 77 7 0 chrX 49184282 49184582 -113415348 + AluSx SINE Alu 1 302 -10 301 326 31 0 chrX 49184683 49184781 -113415149 + L2 LINE L2 3146 3246 -26 492 244 123 3 chrX 49184781 49184977 -113414953 - MIR SINE MIR -12 250 30 280 280 38 89 chrX 49185169 49185326 -113414604 - L2 LINE L2 -94 3178 3030 490 165 0 0 chrX 49185343 49185422 -113414508 + MER69 DNA AcHobo 1 79 -2447 905 177 53 5 chrX 49185445 49185654 -113414276 + MER69 DNA AcHobo 1965 2183 -343 2098 136 7 0 chrX 49185654 49185948 -113413982 - AluJb SINE Alu -16 296 1 733 273 91 89 chrX 49186098 49186655 -113413275 + L1M4 LINE L1 3611 4165 -1981 2056 155 0 0 chrX 49186655 49186958 -113412972 + AluSx SINE Alu 3 305 -7 733 273 91 89 chrX 49186958 49187388 -113412542 + L1M4 LINE L1 4165 4604 -1542 2237 94 0 0 chrX 49187388 49187676 -113412254 + AluSg SINE Alu 1 288 -22 733 273 91 89 chrX 49187676 49187792 -113412138 + L1M4 LINE L1 4604 4718 -1428 478 271 94 53 chrX 49187860 49188199 -113411731 - MLT1H LTR MaLR -105 444 92 29 0 0 0 chrX 49188295 49188324 -113411606 + AT_rich Low_complexity Low_complexity 1 29 0 1203 172 19 5 chrX 49188326 49188535 -113411395 + AluSx SINE Alu 1 212 -100 336 152 0 15 chrX 49188535 49188601 -113411329 + AluSg/x SINE Alu 76 140 -160 352 167 64 13 chrX 49188850 49188928 -113411002 - L1PA15 LINE L1 -2 6163 6082 2526 99 8 6 chrX 49188928 49189282 -113410648 - THE1A LTR MaLR 0 355 1 1495 176 57 3 chrX 49189316 49189634 -113410296 - L1MD3 LINE L1 -6 7989 7655 2318 81 0 0 chrX 49189889 49190195 -113409735 - AluSg SINE Alu 0 306 1 1929 156 0 25 chrX 49190338 49190658 -113409272 - AluJo SINE Alu 0 312 1 1244 191 3 104 chrX 49190662 49191033 -113408897 - AluJo SINE Alu 0 338 2 1671 92 55 13 chrX 49191036 49191274 -113408656 - AluY SINE Alu -8 303 56 4931 122 15 59 chrX 49191381 49191940 -113407990 - L1MA1 LINE L1 -274 6028 5554 2476 78 0 7 chrX 49191940 49192249 -113407681 - AluSg SINE Alu -3 307 1 4931 122 15 59 chrX 49192249 49192788 -113407142 - L1MA1 LINE L1 -748 5554 4993 321 140 0 0 chrX 49192805 49192862 -113407068 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 2029 129 0 0 chrX 49192864 49193142 -113406788 - AluSx SINE Alu -34 278 1 953 140 6 0 chrX 49193145 49193316 -113406614 - L1MA1 LINE L1 -1125 5021 4850 813 122 0 118 chrX 49193322 49193584 -113406346 + AluSq SINE Alu 1 231 -82 1341 164 0 0 chrX 49194039 49194252 -113405678 - AluJb SINE Alu -14 298 86 1403 244 70 42 chrX 49194254 49194835 -113405095 - MLT1H1 LTR MaLR 0 555 3 232 105 0 26 chrX 49194837 49194875 -113405055 + LTR33 LTR ERVL 483 519 -2 293 240 61 140 chrX 49194883 49195034 -113404896 + MLT1L LTR MaLR 257 386 -229 5822 84 7 13 chrX 49195034 49195878 -113404052 + L1MA2 LINE L1 5466 6304 0 293 240 61 140 chrX 49195878 49195955 -113403975 + MLT1L LTR MaLR 386 467 -148 918 141 0 15 chrX 49196205 49196340 -113403590 + FLAM_C SINE Alu 1 133 0 1944 144 3 13 chrX 49196645 49196950 -113402980 - AluSx SINE Alu -10 302 1 2046 112 0 14 chrX 49197087 49197237 -113402693 - AluSx SINE Alu -29 283 137 2309 89 0 7 chrX 49197237 49197540 -113402390 - AluY SINE Alu -10 301 1 2046 112 0 14 chrX 49197540 49197676 -113402254 - AluSx SINE Alu -175 137 1 360 237 35 107 chrX 49197694 49197771 -113402159 - L1MC5 LINE L1 -302 7659 7578 1556 111 0 0 chrX 49197771 49197978 -113401952 + AluSg/x SINE Alu 85 291 -19 360 237 35 107 chrX 49197978 49198071 -113401859 - L1MC5 LINE L1 -383 7578 7480 2323 102 0 6 chrX 49198071 49198384 -113401546 - AluSx SINE Alu -1 311 1 360 237 35 107 chrX 49198384 49198642 -113401288 - L1MC5 LINE L1 -481 7480 7261 562 254 85 12 chrX 49198764 49199012 -113400918 - L1MC5 LINE L1 -726 7235 6970 2238 103 17 0 chrX 49199014 49199316 -113400614 - AluSg SINE Alu -3 307 1 504 273 37 19 chrX 49199352 49199568 -113400362 + L1M4 LINE L1 4465 4684 -1462 2790 109 28 18 chrX 49199744 49200310 -113399620 - L1P5 LINE L1 -429 5722 5149 213 125 31 31 chrX 49200337 49200433 -113399497 + (TATAA)n Simple_repeat Simple_repeat 5 100 0 14072 171 40 41 chrX 49200451 49202232 -113397698 - L1PBa LINE L1 -1744 5118 3336 2137 142 3 0 chrX 49202232 49202542 -113397388 - AluSx SINE Alu -1 311 1 14072 171 40 41 chrX 49202542 49205323 -113394607 - L1PBa LINE L1 -3526 3336 606 1490 227 68 0 chrX 49205329 49205726 -113394204 - L1M4c LINE L1 -4755 1891 1468 1217 144 0 0 chrX 49205726 49205907 -113394023 - AluSp SINE Alu -2 311 131 2228 99 0 32 chrX 49205910 49206222 -113393708 - AluSc SINE Alu -7 302 1 2271 102 0 13 chrX 49206223 49206528 -113393402 - AluSx SINE Alu -11 301 1 1879 292 70 47 chrX 49206530 49207804 -113392126 - L1M4c LINE L1 -5083 1459 148 4649 103 19 7 chrX 49207804 49208486 -113391444 - L1PA16 LINE L1 -1 6165 5476 1879 292 70 47 chrX 49208486 49208625 -113391305 - L1M4c LINE L1 -6394 148 14 358 240 62 73 chrX 49208640 49208832 -113391098 + L2 LINE L2 3083 3272 -41 267 305 0 0 chrX 49208842 49208934 -113390996 + (CA)n Simple_repeat Simple_repeat 1 92 0 931 204 56 21 chrX 49209115 49209453 -113390477 + L1MC5 LINE L1 7580 7929 -32 221 299 91 0 chrX 49209660 49209737 -113390193 - L2 LINE L2 -13 3259 3176 328 267 44 0 chrX 49209746 49209836 -113390094 + MIR SINE MIR 168 261 -1 180 0 0 0 chrX 49209906 49209926 -113390004 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1841 78 82 4 chrX 49209931 49210186 -113389744 - AluSx SINE Alu -37 275 1 468 213 177 14 chrX 49210331 49210472 -113389458 + MER5A DNA MER1_type 5 168 -21 692 108 0 20 chrX 49210563 49210665 -113389265 - FLAM_C SINE Alu -25 118 19 223 379 69 0 chrX 49211539 49211655 -113388275 + L2 LINE L2 3121 3244 -28 263 299 36 29 chrX 49211933 49212070 -113387860 - L1ME LINE L1 -307 5814 5677 572 246 35 23 chrX 49212386 49212557 -113387373 - L2 LINE L2 -862 2452 2280 284 292 88 52 chrX 49212573 49212765 -113387165 + L2 LINE L2 3073 3271 -1 198 231 0 0 chrX 49212835 49212874 -113387056 - L2 LINE L2 -210 3062 3024 190 216 0 0 chrX 49212899 49212936 -113386994 - L2 LINE L2 -19 3253 3217 239 163 0 0 chrX 49213523 49213566 -113386364 + MLT1K LTR MaLR 546 588 0 442 237 93 0 chrX 49213584 49213702 -113386228 - MIR SINE MIR -73 189 61 22 35 0 0 chrX 49213736 49213765 -113386165 + AT_rich Low_complexity Low_complexity 1 29 0 320 259 62 0 chrX 49213884 49213965 -113385965 + L2 LINE L2 2870 2955 -317 24 0 0 0 chrX 49213966 49213990 -113385940 + AT_rich Low_complexity Low_complexity 1 24 0 753 264 125 39 chrX 49214013 49214350 -113385580 + L2 LINE L2 2948 3313 0 521 296 64 75 chrX 49214386 49214761 -113385169 - L1ME4a LINE L1 -86 6035 5665 34 0 0 0 chrX 49214880 49214914 -113385016 + AT_rich Low_complexity Low_complexity 1 34 0 5175 111 13 5 chrX 49214938 49215757 -113384173 - L1MA4 LINE L1 -25 6275 5450 692 305 59 25 chrX 49215800 49216466 -113383464 - L1ME4a LINE L1 -1088 5058 4371 469 326 90 31 chrX 49216523 49217078 -113382852 - L1ME4a LINE L1 -1870 4276 3689 253 185 15 0 chrX 49217548 49217613 -113382317 - HAL1 LINE L1 -136 2371 2306 606 128 27 88 chrX 49217615 49217676 -113382254 - L1MC2 LINE L1 -1 6343 6280 2319 76 17 0 chrX 49217676 49217965 -113381965 + AluSx SINE Alu 1 294 -18 606 128 27 88 chrX 49217965 49218051 -113381879 - L1MC2 LINE L1 -64 6280 6205 41 36 0 0 chrX 49218051 49218106 -113381824 + AT_rich Low_complexity Low_complexity 1 55 0 4949 150 25 19 chrX 49218111 49218885 -113381045 - L1MC3 LINE L1 -114 7671 6903 2261 109 0 0 chrX 49218885 49219188 -113380742 - AluSx SINE Alu -9 303 1 4949 150 25 19 chrX 49219188 49219443 -113380487 - L1MC3 LINE L1 -882 6903 5177 2671 197 14 5 chrX 49219440 49220030 -113379900 - L1MCa LINE L1 -5056 1370 776 * 836 223 85 5 chrX 49220025 49220236 -113379694 - L1MCa LINE L1 -6164 262 35 * 1308 238 84 45 chrX 49220289 49220407 -113379523 - L1ME1 LINE L1 -5 6161 6049 2259 106 3 0 chrX 49220407 49220709 -113379221 + AluSx SINE Alu 2 304 -8 1308 238 84 45 chrX 49220709 49221148 -113378782 - L1ME1 LINE L1 -117 6049 5582 1224 221 60 0 chrX 49221169 49221485 -113378445 + L1 LINE L1 2706 3040 -3106 12540 160 35 30 chrX 49221488 49222515 -113377415 + L1M1 LINE L1 12 1032 -6533 252 0 0 0 chrX 49222515 49222543 -113377387 + (GA)n Simple_repeat Simple_repeat 2 29 0 12540 160 35 30 chrX 49222543 49222603 -113377327 + L1M1 LINE L1 1032 1090 -6475 2486 47 3 17 chrX 49222603 49222903 -113377027 - AluY SINE Alu -15 296 1 12540 160 35 30 chrX 49222903 49223662 -113376268 + L1M1 LINE L1 1090 1844 -5721 2221 114 3 0 chrX 49223662 49223959 -113375971 + AluSx SINE Alu 1 298 -14 12540 160 35 30 chrX 49223959 49225104 -113374826 + L1M1 LINE L1 1844 2981 -4584 2258 105 0 3 chrX 49225104 49225400 -113374530 + AluSg SINE Alu 6 300 -10 12540 160 35 30 chrX 49225400 49227039 -113372891 + L1M1 LINE L1 2981 5349 -2216 325 100 0 0 chrX 49227033 49227083 -113372847 + L1M3 LINE L1 5758 5807 -361 * 808 230 46 18 chrX 49227088 49227371 -113372559 - L1M4c LINE L1 -4897 1487 1197 2259 97 7 7 chrX 49227376 49227675 -113372255 - AluSx SINE Alu -13 299 1 210 98 33 66 chrX 49227714 49227836 -113372094 + (TA)n Simple_repeat Simple_repeat 1 118 0 206 170 0 21 chrX 49227860 49227907 -113372023 + (TA)n Simple_repeat Simple_repeat 1 46 0 1576 166 25 32 chrX 49227921 49228199 -113371731 + AluJo SINE Alu 3 278 -34 599 265 0 5 chrX 49228266 49228280 -113371650 - L1M4c LINE L1 -4568 2078 2065 947 85 15 0 chrX 49228280 49228410 -113371520 - FLAM_C SINE Alu 0 133 2 599 265 0 5 chrX 49228410 49228584 -113371346 - L1M4c LINE L1 -4581 2065 1891 * 6112 158 27 21 chrX 49228579 49229388 -113370542 - L1PA16 LINE L1 -9 6157 5354 2183 117 0 3 chrX 49229388 49229678 -113370252 - AluSx SINE Alu -23 289 1 6112 158 27 21 chrX 49229678 49231036 -113368894 - L1PA16 LINE L1 -812 5354 3960 6004 200 68 69 chrX 49231037 49232943 -113366987 - L1M4c LINE L1 -4728 1918 16 327 233 53 0 chrX 49232994 49233128 -113366802 - L1MDa LINE L1 -3890 2650 2548 5707 165 53 6 chrX 49233158 49233756 -113366174 - L1MC1 LINE L1 -1 6332 5763 2103 130 3 10 chrX 49233756 49234064 -113365866 - AluJb SINE Alu -6 306 1 5707 165 53 6 chrX 49234064 49234412 -113365518 - L1MC1 LINE L1 -570 5763 5433 2431 67 13 0 chrX 49234412 49234712 -113365218 - AluSp SINE Alu -9 304 1 5707 165 53 6 chrX 49234712 49234957 -113364973 - L1MC1 LINE L1 -900 5433 5091 3158 196 40 23 chrX 49234945 49236056 -113363874 - L1M4 LINE L1 -489 5695 4558 * 537 235 148 9 chrX 49236053 49236270 -113363660 - HAL1 LINE L1 -186 2321 2075 * 17070 41 4 1 chrX 49236270 49239160 -113360770 - L1PA5 LINE L1 0 6154 3259 15158 31 3 1 chrX 49239162 49241008 -113358922 + L1P LINE L1 2904 4754 -1392 284 257 70 82 chrX 49241079 49241250 -113358680 - HAL1 LINE L1 -2310 197 29 1116 268 119 18 chrX 49241541 49242052 -113357878 - L1MC4a LINE L1 -1640 6168 5606 2291 108 0 6 chrX 49242056 49242370 -113357560 - AluSx SINE Alu 0 312 1 299 237 217 20 chrX 49242392 49242544 -113357386 - L1MC4 LINE L1 -1096 6946 6765 2260 130 120 8 chrX 49244849 49245233 -113354697 + MSTA LTR MaLR 2 428 0 1106 75 149 0 chrX 49245321 49245495 -113354435 - L1PB2 LINE L1 -1 6150 5951 3120 136 14 5 chrX 49246759 49248672 -113351258 + L1PA13 LINE L1 4144 6161 -2 1957 93 4 11 chrX 49249249 49249528 -113350402 - L1PB1 LINE L1 -1 6150 5874 4042 95 39 2 chrX 49249528 49250587 -113349343 - L1PA8A LINE L1 -358 5773 4668 * 14918 120 37 0 chrX 49250584 49252935 -113346995 + L1PA8A LINE L1 2225 4661 -1485 259 268 28 0 chrX 49252934 49253005 -113346925 - L1PA12 LINE L1 -7507 74 2 * 1221 248 94 35 chrX 49253015 49253470 -113346460 - L1M4 LINE L1 -1826 4320 3839 7600 26 0 0 chrX 49253488 49254508 -113345422 - L1PA4 LINE L1 -4 6151 5133 3119 24 0 0 chrX 49254508 49254879 -113345051 + L1P LINE L1 4213 4583 -1563 5345 196 25 20 chrX 49255189 49256892 -113343038 - L1MC2 LINE L1 -159 6465 4773 213 39 0 0 chrX 49256892 49256918 -113343012 + (TTTCC)n Simple_repeat Simple_repeat 5 30 0 1935 148 3 0 chrX 49256920 49257386 -113342544 - AluSx SINE Alu 0 467 1 5345 196 25 20 chrX 49257386 49257594 -113342336 - L1MC2 LINE L1 -1851 4773 4544 1030 206 67 18 chrX 49257599 49257881 -113342049 - HsTC2 DNA Tc2 -99 1799 1328 575 189 27 61 chrX 49257879 49258027 -113341903 - HsTC2 DNA Tc2 -1224 674 532 * 7265 201 74 58 chrX 49258028 49258372 -113341558 - L1MC2 LINE L1 -1874 4552 4215 2183 108 7 3 chrX 49258372 49258668 -113341262 + AluSx SINE Alu 1 297 -15 7265 201 74 58 chrX 49258668 49260353 -113339577 - L1MC2 LINE L1 -2211 4215 2558 1793 134 0 0 chrX 49260353 49260636 -113339294 + L1PA13 LINE L1 5881 6163 0 7265 201 74 58 chrX 49260636 49261144 -113338786 - L1MC2 LINE L1 -3868 2558 2059 237 97 0 0 chrX 49261144 49261175 -113338755 - Tigger5 DNA MER2_type -1 2322 2292 391 221 26 0 chrX 49261183 49261260 -113338670 - Tigger5 DNA MER2_type -2244 79 1 7265 201 74 58 chrX 49261260 49262168 -113337762 - L1MC2 LINE L1 -4373 2053 944 368 156 55 119 chrX 49262174 49262283 -113337647 - MLT2B1 LTR ERVL -10 510 409 1775 218 3 0 chrX 49262284 49262628 -113337302 - L1MC2 LINE L1 -6032 394 50 568 236 90 39 chrX 49263282 49263460 -113336470 - MLT1J LTR MaLR -2 509 323 465 331 72 28 chrX 49263494 49263784 -113336146 - L2 LINE L2 -675 2639 2337 8772 144 28 1 chrX 49263820 49266098 -113333832 + L1PA12 LINE L1 3877 6168 0 792 300 52 4 chrX 49266098 49266328 -113333602 + MIR SINE MIR 21 261 -1 396 243 75 0 chrX 49266326 49266433 -113333497 - L2 LINE L2 -970 2344 2230 * 3169 160 8 8 chrX 49266443 49266962 -113332968 + MER68 LTR ERV1 8 526 -36 353 231 96 11 chrX 49267094 49267212 -113332718 - MIR SINE MIR -62 146 9 230 264 14 28 chrX 49267843 49267915 -113332015 + MIR SINE MIR 20 90 -172 299 266 101 50 chrX 49268030 49268169 -113331761 + L2 LINE L2 3114 3259 -13 2424 111 28 13 chrX 49268196 49268593 -113331337 - L1MA3 LINE L1 0 6305 5903 266 185 161 0 chrX 49268593 49268669 -113331261 + MIR3 SINE MIR 116 204 -4 36398 53 1 1 chrX 49268936 49273482 -113326448 + L1P LINE L1 11 4553 -1593 5227 130 1 13 chrX 49273473 49273972 -113325958 + L1PB4 LINE L1 5334 5838 -318 * 207 0 0 0 chrX 49273972 49273995 -113325935 + (TA)n Simple_repeat Simple_repeat 2 24 0 2513 48 7 0 chrX 49273995 49274286 -113325644 - AluY SINE Alu -18 293 1 5227 130 1 13 chrX 49274286 49274606 -113325324 + L1PB4 LINE L1 5836 6144 -12 181 315 27 14 chrX 49275914 49275987 -113323943 + L2 LINE L2 575 648 -2666 6187 95 31 16 chrX 49277332 49278279 -113321651 - L1MA3 LINE L1 0 6305 5345 2071 207 94 5 chrX 49278284 49278859 -113321071 - Charlie2 DNA MER1_type -381 2481 1856 984 226 115 7 chrX 49278862 49279150 -113320780 - Charlie2 DNA MER1_type -2458 324 6 219 158 0 88 chrX 49279301 49279358 -113320572 - MIR SINE MIR -72 136 85 287 216 182 11 chrX 49279571 49279659 -113320271 - MIR SINE MIR -8 254 152 419 331 45 19 chrX 49279986 49280143 -113319787 + MER91A DNA MER1_type 1 161 -35 2367 95 0 7 chrX 49280516 49280822 -113319108 + AluSg SINE Alu 3 306 -4 3531 110 43 51 chrX 49281481 49282089 -113317841 + LTR26 LTR ERV1 1 603 0 291 366 0 0 chrX 49282200 49282293 -113317637 + C-rich Low_complexity Low_complexity 1 93 0 180 274 79 30 chrX 49282563 49282727 -113317203 + L2 LINE L2 1988 2159 -1155 2092 102 14 0 chrX 49283254 49283539 -113316391 - AluSx SINE Alu -23 289 1 297 0 0 0 chrX 49283630 49283663 -113316267 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 42 0 0 chrX 49285164 49285188 -113314742 + (TTATA)n Simple_repeat Simple_repeat 4 27 0 1961 140 0 3 chrX 49285192 49285478 -113314452 - AluJb SINE Alu -27 285 1 27 0 0 0 chrX 49285481 49285508 -113314422 + AT_rich Low_complexity Low_complexity 1 27 0 289 267 48 68 chrX 49286676 49286822 -113313108 - L2 LINE L2 -917 2397 2255 29 28 0 0 chrX 49287772 49287808 -113312122 + AT_rich Low_complexity Low_complexity 1 36 0 30054 43 1 1 chrX 49287815 49292272 -113307658 - L1PA5 LINE L1 0 6154 1412 724 308 92 25 chrX 49293501 49293573 -113306357 + L2 LINE L2 2945 3011 -302 479 268 18 0 chrX 49293573 49293685 -113306245 + MER81 DNA DNA 1 114 0 724 308 92 25 chrX 49293685 49293937 -113305993 + L2 LINE L2 3011 3291 -22 892 295 50 25 chrX 49294289 49294648 -113305282 + L2 LINE L2 2919 3286 -27 1007 257 35 15 chrX 49295158 49295459 -113304471 - L1ME1 LINE L1 -7 6159 5887 6105 131 8 27 chrX 49295496 49296291 -113303639 - L1PA16 LINE L1 0 6166 5398 2511 69 0 0 chrX 49296291 49296608 -113303322 - L1PA6 LINE L1 -11 6143 5827 6105 131 8 27 chrX 49296608 49297072 -113302858 - L1PA16 LINE L1 -768 5398 4927 1056 164 16 0 chrX 49297072 49297255 -113302675 - L1M3 LINE L1 -362 5809 5624 6365 138 10 24 chrX 49297257 49297514 -113302416 + L1MA6 LINE L1 5077 5336 -964 6237 101 19 1 chrX 49297514 49298875 -113301055 + L1PA13 LINE L1 4791 6162 -1 6365 138 10 24 chrX 49298875 49299345 -113300585 + L1MA6 LINE L1 5336 5811 -489 540 42 0 0 chrX 49299345 49299416 -113300514 + (CA)n Simple_repeat Simple_repeat 2 72 0 6365 138 10 24 chrX 49299416 49299922 -113300008 + L1MA6 LINE L1 5811 6291 -9 434 258 74 42 chrX 49300286 49300503 -113299427 - L1M4 LINE L1 -6302 240 17 458 264 8 8 chrX 49300988 49301109 -113298821 + MIR3 SINE MIR 66 186 -22 205 317 89 0 chrX 49301203 49301304 -113298626 - MIR SINE MIR -73 189 80 1267 242 93 37 chrX 49302007 49302437 -113297493 + LTR67 LTR ERVL 97 550 -7 317 333 41 29 chrX 49302716 49302887 -113297043 + MLT1K LTR MaLR 83 255 -333 44141 47 1 4 chrX 49302902 49307227 -113292703 - L1PA4 LINE L1 -3 6152 1814 216 0 0 0 chrX 49307227 49307251 -113292679 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 9104 61 5 165 chrX 49307252 49308846 -113291084 + SVA Other Other 48 1386 0 44141 47 1 4 chrX 49308846 49310690 -113289240 - L1PA4 LINE L1 -4340 1815 2 1600 111 43 13 chrX 49311215 49311450 -113288480 - AluSq SINE Alu -11 302 61 21169 148 35 62 chrX 49311451 49312977 -113286953 - L1 LINE L1 -860 6705 5138 2379 90 0 0 chrX 49312977 49313267 -113286663 - AluY SINE Alu -20 291 2 21169 148 35 62 chrX 49313267 49313472 -113286458 - L1 LINE L1 -2427 5138 4929 1182 51 7 0 chrX 49313472 49313609 -113286321 - AluY SINE Alu -173 138 1 21169 148 35 62 chrX 49313609 49315272 -113284658 - L1 LINE L1 -2636 4929 3222 2241 120 0 0 chrX 49315272 49315572 -113284358 + AluY SINE Alu 2 301 -10 21169 148 35 62 chrX 49315572 49318921 -113281009 - L1 LINE L1 -4343 3222 12 275 305 19 19 chrX 49319892 49320046 -113279884 + (TCTCTG)n Simple_repeat Simple_repeat 4 157 0 875 271 66 66 chrX 49320607 49320984 -113278946 - L2 LINE L2 0 3272 2896 322 307 37 18 chrX 49321911 49322074 -113277856 + L2 LINE L2 2635 2800 -514 231 284 35 118 chrX 49322106 49322335 -113277595 + L2 LINE L2 2973 3182 -90 9130 96 18 7 chrX 49323569 49324855 -113275075 + HSMAR2 DNA Mariner 2 1301 -1 225 284 0 0 chrX 49324885 49324966 -113274964 + (TG)n Simple_repeat Simple_repeat 2 82 0 180 349 37 46 chrX 49325605 49325714 -113274216 + L2 LINE L2 2929 3036 -236 1967 184 84 97 chrX 49325726 49326358 -113273572 + MLT1E3 LTR MaLR 1 624 0 297 109 0 0 chrX 49326732 49326778 -113273152 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 1031 277 44 97 chrX 49326778 49327594 -113272336 - L2 LINE L2 -45 3227 2459 185 265 12 60 chrX 49327602 49327685 -113272245 - L3 LINE CR1 -219 1358 1280 629 246 104 17 chrX 49327695 49327935 -113271995 + MIR SINE MIR 2 262 0 266 122 0 0 chrX 49328205 49328246 -113271684 - MIR SINE MIR -138 124 84 408 20 0 0 chrX 49328246 49328295 -113271635 + (CAAG)n Simple_repeat Simple_repeat 2 50 0 1012 174 5 47 chrX 49331546 49331758 -113268172 - MER3 DNA MER1_type 0 209 7 10059 36 2 0 chrX 49331876 49333825 -113266105 - L1PA5 LINE L1 0 6154 4203 820 267 20 16 chrX 49334303 49334550 -113265380 - MIR SINE MIR -12 250 3 2693 223 9 47 chrX 49334857 49335684 -113264246 - L1MCa LINE L1 -3266 3298 2508 8007 17 0 0 chrX 49335696 49337027 -113262903 - L1PA2 LINE L1 -1 6154 4824 993 43 0 0 chrX 49337027 49337142 -113262788 - AluYb8 SINE Alu -6 312 198 38734 37 31 2 chrX 49337144 49341841 -113258089 - L1P LINE L1 -1309 4837 2 3325 186 92 10 chrX 49341838 49343092 -113256838 - L1MCa LINE L1 -4062 2502 1050 * 5753 119 1 14 chrX 49343092 49343955 -113255975 + L1PA15 LINE L1 5311 6162 -3 2226 239 20 9 chrX 49343975 49344220 -113255710 - L1MCa LINE L1 -4991 1054 813 1494 174 8 0 chrX 49344220 49344467 -113255463 - AluJb SINE Alu -23 289 41 2226 239 20 9 chrX 49344467 49344770 -113255160 - L1MCa LINE L1 -5232 813 500 21119 158 20 17 chrX 49347298 49349632 -113250298 + L1MA2 LINE L1 19 2344 -5379 2259 110 7 0 chrX 49349632 49349931 -113249999 - AluSx SINE Alu -11 301 1 21119 158 20 17 chrX 49349931 49352341 -113247589 + L1MA2 LINE L1 2344 4744 -2979 5613 115 4 52 chrX 49352341 49353571 -113246359 + L1PA13 LINE L1 4804 5994 -169 2204 112 3 0 chrX 49353571 49353857 -113246073 + AluSp SINE Alu 1 287 -26 5613 115 4 52 chrX 49353857 49354020 -113245910 + L1PA13 LINE L1 5994 6163 0 21119 158 20 17 chrX 49354020 49356949 -113242981 + L1MA2 LINE L1 4744 7723 0 238 283 36 78 chrX 49358654 49358820 -113241110 + L2 LINE L2 2895 3053 -219 192 40 0 0 chrX 49360486 49360511 -113239419 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 563 284 47 30 chrX 49360993 49361225 -113238705 + MIR SINE MIR 5 240 -22 256 289 86 23 chrX 49361339 49361467 -113238463 - MIR3 SINE MIR -65 143 8 335 264 49 37 chrX 49361613 49361776 -113238154 - MER5A DNA MER1_type -2 187 23 343 333 124 0 chrX 49363170 49363347 -113236583 - MIR SINE MIR -12 250 52 223 225 34 56 chrX 49363502 49363591 -113236339 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 216 185 56 19 chrX 49363665 49363719 -113236211 - MIR SINE MIR -96 166 111 23 0 0 0 chrX 49363982 49364005 -113235925 + AT_rich Low_complexity Low_complexity 1 23 0 180 350 36 77 chrX 49364091 49364285 -113235645 - L2 LINE L2 -92 3180 2995 718 201 26 123 chrX 49364299 49364568 -113235362 + L2 LINE L2 2054 2296 -1018 559 0 0 0 chrX 49364578 49364643 -113235287 - L1PA3 LINE L1 -3 6152 6088 1056 32 8 0 chrX 49364643 49364768 -113235162 + L1PA3 LINE L1 5778 5903 -252 931 242 79 29 chrX 49364771 49365048 -113234882 + L2 LINE L2 2294 2584 -730 319 279 0 0 chrX 49365024 49365103 -113234827 + L2 LINE L2 3230 3308 -5 * 211 233 58 58 chrX 49365392 49365478 -113234452 - MIR SINE MIR -88 174 89 264 328 45 80 chrX 49366116 49366317 -113233613 + MER91A DNA MER1_type 1 194 -2 433 221 52 52 chrX 49366736 49366908 -113233022 + Charlie7 DNA MER1_type 2440 2611 -1 1656 177 25 0 chrX 49367319 49367601 -113232329 - AluJo SINE Alu -23 289 1 269 339 40 16 chrX 49367611 49367735 -113232195 + L2 LINE L2 3137 3263 -9 713 271 39 27 chrX 49367740 49367840 -113232090 - MIR SINE MIR 0 262 165 2444 90 3 0 chrX 49367840 49368150 -113231780 + AluY SINE Alu 1 311 0 713 271 39 27 chrX 49368150 49368307 -113231623 - MIR SINE MIR -97 165 2 507 270 151 0 chrX 49368784 49368936 -113230994 - MER5A DNA MER1_type -6 183 9 471 264 153 0 chrX 49369247 49369410 -113230520 + MIR SINE MIR 62 249 -13 1128 207 51 8 chrX 49370237 49370474 -113229456 + MIR SINE MIR 3 249 -13 1039 287 65 42 chrX 49370985 49371470 -113228460 + HAL1 LINE L1 797 1298 -1209 1910 143 0 17 chrX 49371470 49371764 -113228166 + AluJo SINE Alu 1 289 -23 1039 287 65 42 chrX 49371764 49371849 -113228081 + HAL1 LINE L1 1298 1380 -1127 1240 221 70 105 chrX 49371882 49372368 -113227562 + L2 LINE L2 2611 3081 -232 1321 88 5 0 chrX 49372368 49372562 -113227368 - L1MA4A LINE L1 -2 6301 6107 1240 221 70 105 chrX 49372562 49372788 -113227142 + L2 LINE L2 3081 3313 0 315 0 0 0 chrX 49372837 49372872 -113227058 + (TG)n Simple_repeat Simple_repeat 2 36 0 303 261 0 11 chrX 49373023 49373111 -113226819 + HAL1 LINE L1 2074 2160 -347 335 241 76 32 chrX 49373160 49373318 -113226612 + HAL1b LINE L1 747 911 -437 357 252 62 62 chrX 49373445 49373703 -113226227 + HAL1 LINE L1 2250 2507 0 345 319 35 7 chrX 49373897 49374041 -113225889 + MIR SINE MIR 3 150 -112 1741 137 0 70 chrX 49374387 49374686 -113225244 + AluJb SINE Alu 1 278 -34 291 28 0 0 chrX 49374701 49374737 -113225193 + (GA)n Simple_repeat Simple_repeat 2 37 0 473 293 130 17 chrX 49376039 49376232 -113223698 - MLT1J LTR MaLR -5 610 300 * 547 220 0 18 chrX 49376227 49376336 -113223594 - MLT1J LTR MaLR -404 107 1 1525 328 38 36 chrX 49376344 49376523 -113223407 + L2 LINE L2 1871 2048 -1266 2223 115 6 13 chrX 49376523 49376837 -113223093 - AluSx SINE Alu 0 312 1 1525 328 38 36 chrX 49376837 49377579 -113222351 + L2 LINE L2 2048 2794 -520 304 315 64 18 chrX 49378222 49378441 -113221489 + L1ME4a LINE L1 4972 5200 -946 533 229 146 62 chrX 49378581 49378952 -113220978 + L1ME4a LINE L1 5718 6119 -2 207 333 137 17 chrX 49381700 49381817 -113218113 - L2 LINE L2 0 3272 3142 273 277 69 28 chrX 49381862 49382013 -113217917 - MIR SINE MIR -32 230 70 283 324 17 28 chrX 49383165 49383341 -113216589 - MIR3 SINE MIR -33 175 2 224 316 0 0 chrX 49383429 49383505 -113216425 - MIR SINE MIR -11 251 176 219 252 42 67 chrX 49384178 49384297 -113215633 - MIR SINE MIR -66 142 39 224 211 0 35 chrX 49385060 49385117 -113214813 + (TATG)n Simple_repeat Simple_repeat 4 58 0 475 296 68 11 chrX 49385173 49385349 -113214581 - MIR SINE MIR -57 205 20 279 261 140 6 chrX 49385423 49385589 -113214341 - MIR SINE MIR -36 226 40 203 255 0 0 chrX 49385628 49385679 -113214251 + (CA)n Simple_repeat Simple_repeat 2 52 0 431 216 63 33 chrX 49386335 49386496 -113213434 - MIR SINE MIR -38 224 47 580 234 36 7 chrX 49387314 49387451 -113212479 - MER117 DNA MER1_type -56 141 1 2936 10 0 0 chrX 49388225 49388536 -113211394 + AluY SINE Alu 1 311 0 184 312 109 26 chrX 49388825 49389091 -113210839 - L2 LINE L2 -2402 912 625 829 147 88 20 chrX 49390162 49390366 -113209564 - MER106B DNA MER1_type -15 1044 827 451 267 38 2 chrX 49390367 49390580 -113209350 - ERVL LTR ERVL -1542 4222 3967 205 242 48 0 chrX 49390587 49390649 -113209281 + MIR SINE MIR 196 260 -2 1621 282 52 47 chrX 49390660 49391405 -113208525 - ERVL LTR ERVL -1811 3953 3205 260 316 164 6 chrX 49392376 49392547 -113207383 + MIR SINE MIR 53 250 -12 739 319 85 17 chrX 49393643 49394113 -113205817 + LTR33 LTR ERVL 20 521 0 281 235 82 0 chrX 49394115 49394213 -113205717 + (TGAA)n Simple_repeat Simple_repeat 2 107 0 303 272 49 37 chrX 49394429 49394591 -113205339 + MER5A DNA MER1_type 24 187 -2 256 289 86 23 chrX 49394737 49394865 -113205065 + MIR3 SINE MIR 8 143 -65 502 287 48 30 chrX 49394979 49395209 -113204721 - MIR SINE MIR -22 240 7 201 39 0 0 chrX 49396991 49397017 -113202913 + (CACAC)n Simple_repeat Simple_repeat 5 30 0 188 278 25 62 chrX 49397465 49397627 -113202303 - L2 LINE L2 -219 3053 2898 7934 19 0 0 chrX 49399252 49400766 -113199164 - L1PA3 LINE L1 -3 6152 4640 13651 30 2 0 chrX 49400766 49402379 -113197551 + L1PA3 LINE L1 3028 4643 -1503 20924 160 20 19 chrX 49402493 49405354 -113194576 - L1MA2 LINE L1 -1 7722 4865 2029 161 0 0 chrX 49405354 49405664 -113194266 - AluSx SINE Alu -2 310 1 20924 160 20 19 chrX 49405664 49405739 -113194191 - L1MA2 LINE L1 -2858 4865 4792 5647 127 35 0 chrX 49405739 49407066 -113192864 - L1PA13 LINE L1 0 6163 4812 20924 160 20 19 chrX 49407066 49411821 -113188109 - L1MA2 LINE L1 -2931 4792 13 3378 207 24 49 chrX 49414326 49415608 -113184322 + L1MCb LINE L1 500 1735 -4829 635 311 41 8 chrX 49415623 49415989 -113183941 + L1MCb LINE L1 2734 3111 -3453 1835 147 39 6 chrX 49416001 49416334 -113183596 - L1MA8 LINE L1 -12 6279 5936 3587 80 9 0 chrX 49416339 49416801 -113183129 - MER41A LTR ERV1 -88 466 1 226 250 40 13 chrX 49416841 49416917 -113183013 + MER11C LTR ERVK 582 659 -412 898 66 115 0 chrX 49416917 49417039 -113182891 - MER41-int LTR ERV1 -121 5825 5690 663 141 0 0 chrX 49417045 49417137 -113182793 + L1P3 LINE L1 5 96 -6365 7255 148 17 13 chrX 49417141 49418394 -113181536 + L1P3 LINE L1 1168 2425 -4036 7139 56 5 0 chrX 49418394 49419662 -113180268 + L1PA7 LINE L1 4860 6135 -19 204 40 0 0 chrX 49419663 49419688 -113180242 + (TA)n Simple_repeat Simple_repeat 2 26 0 13377 114 32 16 chrX 49419688 49422065 -113177865 - MER41B-int LTR ERV1 -251 5695 1950 1603 66 5 9 chrX 49422065 49422277 -113177653 + L1PA7 LINE L1 5944 6154 0 13377 114 32 16 chrX 49422277 49422879 -113177051 - MER41B-int LTR ERV1 -3996 1950 1359 495 0 0 0 chrX 49422879 49422934 -113176996 + (CA)n Simple_repeat Simple_repeat 2 56 0 1100 158 3 11 chrX 49422934 49423148 -113176782 - MER41B-int LTR ERV1 -312 4905 929 * 4781 106 35 28 chrX 49423130 49423956 -113175974 - MER41B-int LTR ERV1 -5242 704 1 1123 104 0 0 chrX 49424043 49424197 -113175733 - MER41B LTR ERV1 -1 634 481 3624 183 15 3 chrX 49424198 49424945 -113174985 - L1MA8 LINE L1 -342 5949 5195 3300 31 0 0 chrX 49424947 49425332 -113174598 - L1PA4 LINE L1 0 6155 5771 328 20 20 20 chrX 49425332 49425382 -113174548 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 43694 51 1 3 chrX 49425382 49431538 -113168392 - L1PA4 LINE L1 -16 6139 1 16674 59 0 0 chrX 49431538 49434076 -113165854 - L1PA4 LINE L1 -370 5785 3245 15051 50 6 8 chrX 49434072 49435699 -113164231 + L1P LINE L1 1204 2826 -3320 * 2380 40 0 0 chrX 49435699 49435972 -113163958 + AluY SINE Alu 39 311 0 15051 50 6 8 chrX 49435972 49436394 -113163536 + L1P LINE L1 2826 3248 -2898 1472 171 24 0 chrX 49436390 49436688 -113163242 - L1 LINE L1 -943 6224 5920 * 915 223 110 56 chrX 49436689 49437044 -113162886 - MSTB2 LTR MaLR -83 374 1 11340 207 29 43 chrX 49437047 49440439 -113159491 - L1 LINE L1 -1300 5867 2428 2092 126 7 7 chrX 49440439 49440732 -113159198 - AluSx SINE Alu -19 293 1 11340 207 29 43 chrX 49440732 49440798 -113159132 - L1 LINE L1 -4739 2428 2363 631 206 0 37 chrX 49440798 49440934 -113158996 - FLAM_C SINE Alu -2 131 1 11340 207 29 43 chrX 49440934 49441959 -113157971 - L1 LINE L1 -4804 2363 1786 320 375 33 53 chrX 49442040 49442285 -113157645 - L1 LINE L1 -5432 1736 1497 330 26 0 0 chrX 49443067 49443106 -113156824 + (TG)n Simple_repeat Simple_repeat 2 40 0 33 0 0 0 chrX 49443283 49443316 -113156614 + AT_rich Low_complexity Low_complexity 1 33 0 816 211 53 40 chrX 49443391 49443690 -113156240 - L1M4 LINE L1 -1767 5190 4888 254 203 33 111 chrX 49443763 49443916 -113156014 - L1M4 LINE L1 -2098 4859 4719 1888 208 136 81 chrX 49443916 49444446 -113155484 - MLT1E2 LTR MaLR 0 626 96 879 243 35 3 chrX 49444524 49444808 -113155122 - L1M4 LINE L1 -2234 4723 4431 657 241 103 9 chrX 49444802 49445026 -113154904 - L1M4 LINE L1 -6591 268 24 * 1588 239 81 18 chrX 49445047 49446113 -113153817 - L1MCc LINE L1 -4760 2181 1035 1545 272 63 20 chrX 49446118 49446669 -113153261 + MER90 LTR ERV1 1 575 0 448 149 0 0 chrX 49446812 49446886 -113153044 + AluJ/FRAM SINE Alu 226 299 -13 286 226 27 116 chrX 49447563 49447709 -113152221 + MER89-int LTR ERV1 840 972 -5829 390 284 114 56 chrX 49448585 49448926 -113151004 + MER89-int LTR ERV1 1850 2210 -4591 35963 44 2 2 chrX 49450024 49454656 -113145274 - L1P LINE L1 -1515 4631 1 600 244 52 28 chrX 49454708 49454958 -113144972 + L1ME1 LINE L1 3755 4010 -2136 1968 136 3 20 chrX 49454962 49455264 -113144666 + AluSg SINE Alu 3 299 -11 2151 229 42 91 chrX 49455265 49455915 -113144015 + L1ME1 LINE L1 5048 5661 -542 5237 32 13 0 chrX 49455915 49456535 -113143395 - L1PA4 LINE L1 -3 6152 5525 2151 229 42 91 chrX 49456535 49456994 -113142936 + L1ME1 LINE L1 5661 6141 -62 303 227 45 0 chrX 49457103 49457169 -113142761 + L1MDa LINE L1 79 147 -6393 959 149 0 11 chrX 49457281 49457455 -113142475 - L1MB8 LINE L1 -11 6167 5996 2444 178 7 2 chrX 49457459 49457902 -113142028 - L1PA12 LINE L1 -7126 455 11 669 199 36 0 chrX 49458002 49458168 -113141762 - L1M4 LINE L1 -1066 5080 4909 2074 158 63 55 chrX 49458183 49458676 -113141254 - L1MB1 LINE L1 -1 6167 5671 1257 132 4 53 chrX 49459489 49459732 -113140198 + L1PA13 LINE L1 6 236 -5639 * 11096 197 68 67 chrX 49459731 49460962 -113138968 + L1PA13 LINE L1 1101 2330 -4131 280 57 0 0 chrX 49460962 49460997 -113138933 - U2 snRNA snRNA -153 35 1 11096 197 68 67 chrX 49460997 49463824 -113136106 + L1PA13 LINE L1 2330 5237 -1224 5857 105 19 7 chrX 49463826 49464361 -113135569 + L1PA13 LINE L1 5374 5901 -577 298 22 65 0 chrX 49464361 49464407 -113135523 + A-rich Low_complexity Low_complexity 2 50 0 5857 105 19 7 chrX 49464407 49464957 -113134973 + L1PA13 LINE L1 5901 6472 -6 15542 169 27 17 chrX 49465213 49467567 -113132363 + L1M2 LINE L1 7 2409 -4439 3159 100 2 2 chrX 49467567 49468015 -113131915 - L1PA16 LINE L1 -9 6157 5710 15542 169 27 17 chrX 49468015 49469080 -113130850 + L1M2 LINE L1 2409 3462 -3386 394 347 50 34 chrX 49469821 49470199 -113129731 + HERVL40 LTR ERVL 2490 2873 -2657 1976 123 70 22 chrX 49470963 49471320 -113128610 - THE1C LTR MaLR 0 375 2 395 293 0 21 chrX 49472521 49472661 -113127269 + MER89-int LTR ERV1 6266 6402 -399 432 276 145 7 chrX 49472945 49473090 -113126840 + MIR SINE MIR 7 171 -91 2142 114 4 0 chrX 49473108 49473412 -113126518 + AluSx SINE Alu 1 305 0 449 283 0 9 chrX 49473605 49473718 -113126212 - MER81 DNA DNA -2 112 1 2478 202 43 10 chrX 49473989 49474498 -113125432 + REP3 LTR ERV 37 562 0 1735 228 46 30 chrX 49474934 49475477 -113124453 + L1ME3A LINE L1 5612 6163 -7 3187 110 28 6 chrX 49475845 49476347 -113123583 + L1PA16 LINE L1 5654 6166 0 7268 30 1 3 chrX 49476347 49477205 -113122725 + L1PA3 LINE L1 5289 6155 0 1504 108 50 0 chrX 49477219 49477477 -113122453 + L1MA3 LINE L1 6035 6305 0 3518 197 97 129 chrX 49477494 49478022 -113121908 - L1MC3 LINE L1 -8 7777 7234 275 243 57 0 chrX 49478022 49478092 -113121838 - MLT1F1 LTR MaLR -442 125 52 3518 197 97 129 chrX 49478092 49478667 -113121263 - L1MC3 LINE L1 -551 7234 6643 1959 125 11 0 chrX 49478667 49478931 -113120999 - AluSx SINE Alu -45 267 1 3518 197 97 129 chrX 49478931 49479546 -113120384 - L1MC3 LINE L1 -1142 6643 6045 3016 91 10 0 chrX 49479547 49479965 -113119965 + L1PA8 LINE L1 5736 6157 -15 7797 19 0 0 chrX 49479983 49481357 -113118573 + L1PA3 LINE L1 4773 6155 0 1078 265 63 28 chrX 49481387 49482142 -113117788 - L1ME LINE L1 -4865 1215 464 1191 72 0 0 chrX 49482150 49482330 -113117600 + (TA)n Simple_repeat Simple_repeat 1 180 0 242 340 41 52 chrX 49482415 49482759 -113117171 - L1ME LINE L1 -5643 427 88 364 342 86 5 chrX 49483002 49483262 -113116668 - L1ME LINE L1 -378 5784 5506 3880 160 45 15 chrX 49483320 49484394 -113115536 + L1ME4a LINE L1 4713 5931 -190 330 138 86 0 chrX 49484394 49484510 -113115420 + (TA)n Simple_repeat Simple_repeat 1 126 0 3880 160 45 15 chrX 49484510 49484546 -113115384 + L1ME4a LINE L1 5931 5964 -157 360 43 93 37 chrX 49484546 49484707 -113115223 + (TA)n Simple_repeat Simple_repeat 2 171 0 44 35 0 0 chrX 49484710 49484768 -113115162 + AT_rich Low_complexity Low_complexity 1 58 0 3882 71 26 11 chrX 49484794 49485347 -113114583 - L1P5 LINE L1 -356 5795 5236 508 151 0 78 chrX 49485363 49485555 -113114375 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 474 247 0 33 chrX 49485494 49485676 -113114254 + (TA)n Simple_repeat Simple_repeat 1 176 0 * 474 247 0 33 chrX 49485691 49485873 -113114057 + (TA)n Simple_repeat Simple_repeat 1 176 0 474 247 0 33 chrX 49485889 49486236 -113113694 + (TA)n Simple_repeat Simple_repeat 1 335 0 320 147 11 68 chrX 49486252 49486429 -113113501 + (CATATA)n Simple_repeat Simple_repeat 3 169 0 301 233 12 23 chrX 49486431 49486517 -113113413 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 218 202 0 67 chrX 49486520 49486698 -113113232 + (CATATA)n Simple_repeat Simple_repeat 2 167 0 321 221 41 8 chrX 49486701 49486823 -113113107 + (TA)n Simple_repeat Simple_repeat 1 126 0 334 39 0 0 chrX 49486823 49486874 -113113056 + L1MA2 LINE L1 6103 6153 -151 226 155 0 52 chrX 49486874 49486932 -113112998 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 318 26 0 0 chrX 49486977 49487016 -113112914 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chrX 49487015 49487046 -113112884 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 2494 95 11 16 chrX 49487016 49487408 -113112522 + L1PB1 LINE L1 5788 6149 -2 7097 183 51 8 chrX 49487416 49488945 -113110985 - L1 LINE L1 -1812 4334 2740 12604 29 2 0 chrX 49488954 49491191 -113108739 + L1PA3 LINE L1 3921 6162 0 1564 225 54 21 chrX 49491192 49491615 -113108315 - L1 LINE L1 -3396 2750 2314 208 353 80 27 chrX 49495270 49495420 -113104510 - L2 LINE L2 -1 3271 3114 308 194 1 61 chrX 49495542 49495631 -113104299 - MIR SINE MIR -67 141 61 282 265 29 66 chrX 49496577 49496713 -113103217 - MIR3 SINE MIR -28 180 50 265 276 0 0 chrX 49496848 49496924 -113103006 - MIR SINE MIR -11 251 176 219 270 47 61 chrX 49497582 49497730 -113102200 - MIR SINE MIR -78 184 39 202 309 151 24 chrX 49498297 49498423 -113101507 - L3 LINE CR1 -88 1489 1348 1695 194 10 44 chrX 49499406 49499793 -113100137 - MLT1A2 LTR MaLR 0 374 1 354 244 0 12 chrX 49499821 49499907 -113100023 - MIR SINE MIR -130 132 48 267 330 0 10 chrX 49500105 49500202 -113099728 + (CTGGGG)n Simple_repeat Simple_repeat 2 97 0 2006 138 3 23 chrX 49503741 49504046 -113095884 + AluJo SINE Alu 1 299 -13 427 305 116 4 chrX 49504131 49504364 -113095566 - L2 LINE L2 -2435 879 621 370 188 32 85 chrX 49506917 49507046 -113092884 - L1ME LINE L1 -410 5756 5635 239 281 19 5 chrX 49507060 49507185 -113092745 - MIR SINE MIR -82 126 21 265 226 26 41 chrX 49507509 49507621 -113092309 - MIR SINE MIR -58 150 79 * 391 245 33 54 chrX 49507567 49507751 -113092179 + MIR3 SINE MIR 22 201 -7 301 271 41 16 chrX 49507924 49508046 -113091884 + MIR SINE MIR 45 169 -93 189 264 19 0 chrX 49508132 49508185 -113091745 - MIR SINE MIR -68 140 87 24 67 0 0 chrX 49508492 49508537 -113091393 + AT_rich Low_complexity Low_complexity 1 45 0 608 247 126 17 chrX 49508730 49508961 -113090969 - MIR SINE MIR -2 260 5 418 302 9 9 chrX 49509232 49509348 -113090582 + MIR SINE MIR 32 147 -61 855 286 48 66 chrX 49509432 49509810 -113090120 + L1MEd LINE L1 181 551 -5654 27114 39 3 1 chrX 49509811 49513836 -113086094 + L1PA4 LINE L1 2118 6149 -6 2050 263 86 36 chrX 49513826 49514856 -113085074 + L1MEd LINE L1 535 1715 -861 * 2400 81 0 0 chrX 49514906 49515250 -113084680 + AluY SINE Alu 1 311 0 878 263 72 47 chrX 49515721 49516180 -113083750 + L1MEd LINE L1 2131 2561 -3654 422 65 16 0 chrX 49517128 49517190 -113082740 + (TG)n Simple_repeat Simple_repeat 1 63 0 201 121 0 0 chrX 49517438 49517471 -113082459 + (TG)n Simple_repeat Simple_repeat 2 34 0 331 273 45 39 chrX 49518152 49518306 -113081624 + MIR SINE MIR 91 245 -17 433 308 74 77 chrX 49518555 49518867 -113081063 + L2 LINE L2 2949 3259 -13 220 330 0 0 chrX 49518992 49519080 -113080850 + (TA)n Simple_repeat Simple_repeat 1 88 0 450 325 49 73 chrX 49519293 49519363 -113080567 + L2 LINE L2 2461 2531 -741 2085 145 3 0 chrX 49519363 49519659 -113080271 - AluJb SINE Alu -15 297 1 450 325 49 73 chrX 49519659 49520415 -113079515 + L2 LINE L2 2531 3268 -4 288 0 0 0 chrX 49520861 49520893 -113079037 + (GA)n Simple_repeat Simple_repeat 2 33 0 396 181 0 42 chrX 49520948 49521020 -113078910 - Zaphod DNA AcHobo 0 4031 3963 * 532 336 57 57 chrX 49521017 49521335 -113078595 - MER115 DNA AcHobo -266 427 110 280 316 133 5 chrX 49522312 49522508 -113077422 + MIR SINE MIR 38 258 -4 185 296 14 14 chrX 49524138 49524209 -113075721 - L2 LINE L2 -4 3268 3198 198 162 147 44 chrX 49524275 49524343 -113075587 - L2 LINE L2 -3 3269 3195 368 248 137 59 chrX 49524839 49524992 -113074938 - MIR SINE MIR -13 249 85 65 0 0 0 chrX 49525497 49525562 -113074368 + AT_rich Low_complexity Low_complexity 1 65 0 2269 107 3 7 chrX 49525668 49525978 -113073952 + AluSx SINE Alu 1 309 -3 438 269 160 6 chrX 49526443 49526599 -113073331 - MER91A DNA MER1_type -8 188 9 223 325 25 50 chrX 49526596 49526716 -113073214 + MIR SINE MIR 49 165 -97 * 320 284 63 18 chrX 49527061 49527245 -113072685 + MIR3 SINE MIR 7 190 -66 402 294 75 48 chrX 49527416 49527603 -113072327 - MIR3 SINE MIR -10 198 7 313 247 43 11 chrX 49527769 49527862 -113072068 - MIR3 SINE MIR -28 180 85 357 354 121 50 chrX 49528147 49528965 -113070965 + L2 LINE L2 2383 3272 0 217 339 65 26 chrX 49528991 49529237 -113070693 + L3 LINE CR1 1277 1576 -1 273 308 136 28 chrX 49529338 49529552 -113070378 + MIR SINE MIR 20 256 -6 380 221 76 10 chrX 49530608 49530722 -113069208 - MIR SINE MIR -64 144 33 700 291 16 24 chrX 49530964 49531215 -113068715 + MIR SINE MIR 9 257 -5 452 295 32 21 chrX 49532493 49532683 -113067247 - MIR SINE MIR -64 198 7 269 267 89 40 chrX 49532728 49532829 -113067101 - MIR SINE MIR -73 135 30 185 341 62 16 chrX 49532974 49533103 -113066827 - L2 LINE L2 0 3272 3138 191 340 40 30 chrX 49533302 49533402 -113066528 - L2 LINE L2 -302 2970 2870 359 342 72 47 chrX 49533689 49533967 -113065963 + L2 LINE L2 2968 3252 -20 206 329 25 19 chrX 49533989 49534147 -113065783 + GA-rich Low_complexity Low_complexity 4 162 0 475 285 39 15 chrX 49534201 49534331 -113065599 + MIR3 SINE MIR 11 143 -65 222 262 16 0 chrX 49534343 49534404 -113065526 + (TAA)n Simple_repeat Simple_repeat 1 62 0 201 323 46 0 chrX 49534477 49534542 -113065388 + L2 LINE L2 3244 3311 -2 598 283 89 27 chrX 49534867 49535258 -113064672 + L1MCa LINE L1 51 424 -5999 4217 208 119 67 chrX 49535642 49535974 -113063956 + L1MCa LINE L1 1148 1461 -5480 1106 168 35 0 chrX 49535974 49536176 -113063754 - L1PA16 LINE L1 -1 6165 5957 4217 208 119 67 chrX 49536176 49537640 -113062290 + L1MCa LINE L1 1461 3038 -3903 291 71 0 0 chrX 49538132 49538174 -113061756 + (TCTCCC)n Simple_repeat Simple_repeat 3 44 0 6352 232 94 22 chrX 49538471 49538804 -113061126 + L1PB2 LINE L1 775 1083 -5328 8195 19 5 0 chrX 49538804 49539917 -113060013 + L1PA3 LINE L1 5040 6155 0 6352 232 94 22 chrX 49539917 49540548 -113059382 + L1PB2 LINE L1 1083 1667 -4744 2198 140 12 93 chrX 49540548 49540977 -113058953 + MSTD LTR MaLR 1 394 -2 6352 232 94 22 chrX 49540977 49541341 -113058589 + L1PB2 LINE L1 1667 2003 -4408 2092 141 0 0 chrX 49541341 49541645 -113058285 - AluSx SINE Alu -8 304 1 6352 232 94 22 chrX 49541645 49541776 -113058154 + L1PB2 LINE L1 2003 2123 -4288 24139 31 1 1 chrX 49541776 49545278 -113054652 - L1PA3 LINE L1 -3 6152 2650 6352 232 94 22 chrX 49545278 49547077 -113052853 + L1PB2 LINE L1 2123 6411 0 8125 194 120 76 chrX 49547082 49548835 -113051095 + L1MD3 LINE L1 4700 6374 -1621 357 82 0 0 chrX 49548835 49548884 -113051046 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 8125 194 120 76 chrX 49548884 49549270 -113050660 + L1MD3 LINE L1 6374 6742 -1253 2000 155 42 9 chrX 49549270 49549605 -113050325 + L1MC1 LINE L1 5987 6332 -1 8125 194 120 76 chrX 49549605 49549962 -113049968 + L1MD3 LINE L1 6742 7082 -913 646 214 8 0 chrX 49549962 49550088 -113049842 + MLT1F1 LTR MaLR 5 131 -436 8125 194 120 76 chrX 49550088 49550624 -113049306 + L1MD3 LINE L1 7082 7985 -10 434 253 97 26 chrX 49550872 49551026 -113048904 + L1MEd LINE L1 438 602 -5952 1996 227 45 61 chrX 49551117 49551720 -113048210 + MLT1E LTR MaLR 1 593 0 222 37 0 0 chrX 49551751 49551778 -113048152 + (CA)n Simple_repeat Simple_repeat 2 28 0 297 238 33 90 chrX 49552010 49552132 -113047798 + L1MEd LINE L1 851 965 -5589 414 0 0 0 chrX 49552147 49552193 -113047737 + (CA)n Simple_repeat Simple_repeat 2 47 0 825 279 41 43 chrX 49552204 49553109 -113046821 + L1MEd LINE L1 1168 2160 -4585 586 254 18 14 chrX 49553165 49553350 -113046580 + L1MEd LINE L1 10 156 -5889 1716 260 44 19 chrX 49553422 49553858 -113046072 + L1MEd LINE L1 3767 4225 -2339 1633 176 109 10 chrX 49553858 49554171 -113045759 - MER2 DNA MER2_type 0 344 1 1716 260 44 19 chrX 49554171 49554369 -113045561 + L1MEd LINE L1 4225 4417 -2147 932 182 164 17 chrX 49554388 49554619 -113045311 - MER93b LTR ERV1 -28 345 81 5972 96 16 16 chrX 49554619 49555480 -113044450 - L1PA13 LINE L1 -28 6135 5275 1097 243 30 32 chrX 49555478 49555816 -113044114 + L1MEd LINE L1 4407 4743 -1821 * 2544 232 37 49 chrX 49555821 49556562 -113043368 + L1ME LINE L1 4 802 -6057 1385 215 129 11 chrX 49556587 49556747 -113043183 + L1ME LINE L1 869 1009 -5850 203 0 37 0 chrX 49556747 49556774 -113043156 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1385 215 129 11 chrX 49556774 49556985 -113042945 + L1ME LINE L1 1009 1284 -5575 2626 250 38 34 chrX 49557079 49557609 -113042321 + L1ME LINE L1 2569 3095 -3862 897 136 0 30 chrX 49557609 49557741 -113042189 + FLAM_C SINE Alu 4 131 -2 2626 250 38 34 chrX 49557741 49558349 -113041581 + L1ME LINE L1 3095 3678 -3279 * 7664 213 20 42 chrX 49558341 49560360 -113039570 + L1ME LINE L1 3912 5885 -1072 2028 132 48 6 chrX 49560360 49560693 -113039237 + L1MB7 LINE L1 5836 6182 -2 2491 253 119 80 chrX 49560695 49562946 -113036984 + L1ME3A LINE L1 2284 4446 -1700 258 32 0 0 chrX 49562946 49562977 -113036953 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 348 64 0 0 chrX 49562976 49563023 -113036907 + (TG)n Simple_repeat Simple_repeat 2 48 0 2491 253 119 80 chrX 49562977 49563123 -113036807 + L1ME3A LINE L1 4446 4727 -1419 547 251 144 16 chrX 49563120 49563307 -113036623 + L1ME3A LINE L1 5675 5885 -285 * 206 183 100 17 chrX 49563308 49563368 -113036562 - MIR SINE MIR -31 231 167 336 277 48 0 chrX 49563616 49563699 -113036231 - L2 LINE L2 -18 3254 3168 878 273 64 0 chrX 49563731 49563951 -113035979 - MIR SINE MIR -4 258 25 779 264 14 14 chrX 49566946 49567154 -113032776 + MIR SINE MIR 1 208 -54 392 306 102 38 chrX 49567388 49567545 -113032385 - MIR3 SINE MIR -32 176 10 245 264 97 41 chrX 49567742 49567840 -113032090 - MIR SINE MIR -57 151 75 448 352 79 42 chrX 49568135 49568516 -113031414 + L2 LINE L2 2843 3237 -35 241 308 0 56 chrX 49569400 49569507 -113030423 - MIR SINE MIR -82 180 80 494 238 0 16 chrX 49570221 49570343 -113029587 + L1ME LINE L1 6354 6473 -459 343 241 51 44 chrX 49570661 49570798 -113029132 - L2 LINE L2 -1 3312 3175 893 249 65 4 chrX 49573253 49573482 -113026448 + MIR SINE MIR 1 243 -19 284 217 113 9 chrX 49573987 49574093 -113025837 + MIR3 SINE MIR 48 164 -44 289 280 126 14 chrX 49574733 49574876 -113025054 + MIR SINE MIR 58 216 -46 418 353 83 28 chrX 49575453 49575889 -113024041 - L2 LINE L2 -2 3270 2811 503 273 106 19 chrX 49576224 49576385 -113023545 + MER5B DNA MER1_type 4 178 0 621 289 40 62 chrX 49576809 49577182 -113022748 + L2 LINE L2 2320 2684 -630 247 257 108 14 chrX 49577324 49577398 -113022532 + L2 LINE L2 3233 3313 0 200 159 23 23 chrX 49577398 49577442 -113022488 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 366 212 168 35 chrX 49577789 49577902 -113022028 + MIR3 SINE MIR 58 185 -23 2098 128 16 0 chrX 49579729 49580035 -113019895 + AluSq SINE Alu 1 311 -2 183 305 70 39 chrX 49580307 49580435 -113019495 + MIR3 SINE MIR 60 191 -17 195 259 35 17 chrX 49581214 49581272 -113018658 + L3 LINE CR1 584 642 -935 * 2918 250 62 21 chrX 49581236 49582380 -113017550 + L2 LINE L2 2126 3310 -3 234 307 132 48 chrX 49582428 49582617 -113017313 - L2 LINE L2 -338 2976 2772 420 183 43 0 chrX 49582632 49582725 -113017205 - Charlie7 DNA MER1_type -5 2607 2511 409 141 141 84 chrX 49582729 49582871 -113017059 - Charlie7 DNA MER1_type -2455 157 8 309 342 180 4 chrX 49582877 49583105 -113016825 - L2 LINE L2 -558 2756 2489 909 232 73 9 chrX 49583284 49583504 -113016426 + MIR SINE MIR 12 245 -17 187 350 87 10 chrX 49583579 49583682 -113016248 + L2 LINE L2 2860 2970 -302 2375 86 0 19 chrX 49583943 49584256 -113015674 + AluSg SINE Alu 1 307 -3 577 328 55 64 chrX 49584407 49584828 -113015102 + L2 LINE L2 2841 3257 -15 582 189 85 108 chrX 49585666 49585925 -113014005 + MER112 DNA MER1_type 4 256 0 192 40 0 0 chrX 49587372 49587397 -113012533 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 588 65 0 0 chrX 49587396 49587473 -113012457 + (TG)n Simple_repeat Simple_repeat 2 78 0 584 266 106 32 chrX 49587802 49587990 -113011940 - MIR SINE MIR -49 213 12 426 257 52 22 chrX 49588269 49588405 -113011525 - MIR SINE MIR -121 141 2 205 429 0 8 chrX 49588518 49588637 -113011293 + MIR SINE MIR 34 151 -111 850 218 48 0 chrX 49588649 49588837 -113011093 + MIR SINE MIR 65 261 -1 207 69 0 0 chrX 49588843 49588872 -113011058 + (CAT)n Simple_repeat Simple_repeat 2 30 0 404 274 9 19 chrX 49589581 49589687 -113010243 - MIR3 SINE MIR 0 208 104 333 366 71 0 chrX 49589893 49590005 -113009925 + L2 LINE L2 3153 3272 0 474 317 143 38 chrX 49590064 49590357 -113009573 - L2 LINE L2 -439 2875 2552 678 328 134 21 chrX 49590400 49591159 -113008771 - L2 LINE L2 -1390 1924 1080 715 335 87 20 chrX 49591179 49591687 -113008243 - L2 LINE L2 -1728 1586 1045 198 242 0 0 chrX 49592873 49592939 -113006991 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 470 277 29 53 chrX 49593016 49593223 -113006707 + MIR SINE MIR 32 236 -26 703 242 38 11 chrX 49593297 49593483 -113006447 - MIR SINE MIR -1 261 71 274 296 0 11 chrX 49593642 49593730 -113006200 + L1ME LINE L1 5528 5614 -507 939 301 135 21 chrX 49593744 49594401 -113005529 + L1MC4a LINE L1 5222 5906 -258 306 0 0 0 chrX 49594628 49594662 -113005268 + (TG)n Simple_repeat Simple_repeat 2 35 0 195 329 69 95 chrX 49596324 49596747 -113003183 - L2 LINE L2 -5 3267 2856 243 0 0 0 chrX 49596764 49596791 -113003139 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2175 94 0 0 chrX 49596791 49597068 -113002862 - AluSg1 SINE Alu -32 277 1 263 354 40 0 chrX 49597654 49597753 -113002177 + MIR3 SINE MIR 3 105 -103 215 88 88 0 chrX 49598232 49598266 -113001664 + L2 LINE L2 3269 3305 -8 206 322 0 56 chrX 49598304 49598484 -113001446 + GA-rich Low_complexity Low_complexity 5 174 0 200 318 14 47 chrX 49598416 49598564 -113001366 + (CAGAGA)n Simple_repeat Simple_repeat 6 148 0 * 300 294 5 33 chrX 49598760 49598944 -113000986 + GA-rich Low_complexity Low_complexity 1 179 0 389 263 0 0 chrX 49599314 49599409 -113000521 + MIR SINE MIR 168 262 0 303 320 39 16 chrX 49599410 49599538 -113000392 + MIR SINE MIR 53 183 -79 904 259 29 17 chrX 49600283 49600522 -112999408 + MIR SINE MIR 20 261 -1 436 307 87 0 chrX 49600619 49600769 -112999161 + MIR3 SINE MIR 30 192 -16 531 252 16 8 chrX 49600823 49600946 -112998984 - MIR SINE MIR -129 133 10 210 235 313 17 chrX 49601584 49601699 -112998231 - MIR3 SINE MIR -6 202 54 338 301 0 27 chrX 49601979 49602125 -112997805 + GA-rich Low_complexity Low_complexity 1 142 0 311 295 8 8 chrX 49602161 49602283 -112997647 + GA-rich Low_complexity Low_complexity 2 123 0 224 317 62 12 chrX 49602615 49602735 -112997195 + MIR SINE MIR 28 147 -61 215 288 15 0 chrX 49602842 49602908 -112997022 + MIR SINE MIR 170 236 -26 * 935 261 39 0 chrX 49602907 49603141 -112996789 - MIR SINE MIR 0 262 20 207 256 23 35 chrX 49603177 49603263 -112996667 + CT-rich Low_complexity Low_complexity 1 85 0 889 272 68 62 chrX 49603441 49603908 -112996022 - L1MC/D LINE L1 -2021 5787 5318 463 222 174 30 chrX 49603921 49604088 -112995842 + MIR SINE MIR 2 192 -70 337 289 0 0 chrX 49604152 49604228 -112995702 - L2 LINE L2 0 3272 3197 248 322 47 86 chrX 49604325 49604558 -112995372 + L2 LINE L2 2958 3181 -91 318 333 44 6 chrX 49605187 49605262 -112994668 - L1ME LINE L1 -386 5735 5664 498 208 0 17 chrX 49605262 49605382 -112994548 - L1MB8 LINE L1 0 6178 6061 318 333 44 6 chrX 49605382 49605486 -112994444 - L1ME LINE L1 -457 5664 5549 3315 96 29 18 chrX 49606129 49606171 -112993759 - MLT2A2 LTR ERVL 0 453 413 180 0 0 0 chrX 49606171 49606191 -112993739 + (CA)n Simple_repeat Simple_repeat 2 21 0 3315 96 29 18 chrX 49606191 49606212 -112993718 - MLT2A2 LTR ERVL -40 413 394 312 120 0 0 chrX 49606212 49606262 -112993668 + (TA)n Simple_repeat Simple_repeat 2 51 0 3315 96 29 18 chrX 49606262 49606645 -112993285 - MLT2A2 LTR ERVL -59 394 1 270 373 44 6 chrX 49606794 49606952 -112992978 - L2 LINE L2 -219 3053 2890 720 257 69 0 chrX 49607065 49607240 -112992690 + MIR SINE MIR 11 197 -65 6553 23 0 0 chrX 49607243 49607990 -112991940 - L1PA4 LINE L1 -1500 4646 3900 8170 25 1 0 chrX 49607990 49609501 -112990429 + L1PA4 LINE L1 4644 6155 0 26 74 0 0 chrX 49610169 49610223 -112989707 + AT_rich Low_complexity Low_complexity 1 54 0 210 289 0 93 chrX 49610224 49610289 -112989641 - L2 LINE L2 -682 2632 2577 2781 139 34 11 chrX 49610289 49610736 -112989194 - MER65C LTR ERV1 -4 457 1 210 289 0 93 chrX 49610736 49610767 -112989163 - L2 LINE L2 -737 2577 2545 884 124 5 2 chrX 49610767 49610922 -112989008 + L1MB3 LINE L1 5675 5831 -340 313 196 98 18 chrX 49611175 49611287 -112988643 - MIR SINE MIR -122 140 20 2798 48 6 6 chrX 49611577 49611912 -112988018 - L1PA5 LINE L1 0 6154 5820 2170 127 50 14 chrX 49611912 49612269 -112987661 + L1MB3 LINE L1 5806 6181 -2 2511 69 0 0 chrX 49612512 49612817 -112987113 - AluY SINE Alu -6 305 1 6458 163 33 11 chrX 49613312 49613844 -112986086 + L1PB1 LINE L1 3960 4478 -1673 2539 18 0 0 chrX 49613844 49614120 -112985810 + AluYa5 SINE Alu 36 311 0 6458 163 33 11 chrX 49614120 49615122 -112984808 + L1PB1 LINE L1 4478 5555 -596 2019 100 11 4 chrX 49615122 49615439 -112984491 + AluSp SINE Alu 1 319 0 6458 163 33 11 chrX 49615439 49616050 -112983880 + L1PB1 LINE L1 5555 6151 0 427 307 88 74 chrX 49617287 49617530 -112982400 - L2 LINE L2 0 3272 3034 228 100 0 0 chrX 49617530 49617570 -112982360 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2220 100 0 0 chrX 49617570 49617850 -112982080 - AluSx SINE Alu -32 280 1 427 307 88 74 chrX 49617850 49617888 -112982042 - L2 LINE L2 -237 3035 2986 325 382 19 19 chrX 49617996 49618208 -112981722 - L2 LINE L2 -411 2903 2692 24985 25 33 0 chrX 49618371 49622104 -112977826 - L1PA4 LINE L1 -3 6152 2292 955 212 9 4 chrX 49622208 49622434 -112977496 - L1 LINE L1 -3570 2576 2350 * 4589 131 11 37 chrX 49622430 49623242 -112976688 - L1PA13 LINE L1 -1 6162 5372 3167 147 4 7 chrX 49623226 49623769 -112976161 - L1PA13 LINE L1 -3766 2380 1840 * 7141 34 0 0 chrX 49623763 49624593 -112975337 - L1P LINE L1 -1888 4258 3429 200 338 0 0 chrX 49624796 49624876 -112975054 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 1638 164 118 12 chrX 49625626 49625956 -112973974 - MLT1A1 LTR MaLR 0 365 1 641 330 27 81 chrX 49627333 49627742 -112972188 - L2 LINE L2 -61 3211 2825 24391 51 5 0 chrX 49627859 49630835 -112969095 - L1P LINE L1 -3153 2993 4 3592 94 19 2 chrX 49630957 49631435 -112968495 + L1PA10 LINE L1 5682 6167 -1 529 269 88 22 chrX 49631436 49631618 -112968312 - L1ME3A LINE L1 -10 6160 5967 2104 115 16 10 chrX 49631828 49632132 -112967798 + AluSc SINE Alu 1 306 -3 2056 122 4 0 chrX 49632971 49633250 -112966680 + AluSx SINE Alu 1 280 -32 746 308 170 45 chrX 49633490 49634149 -112965781 - L2 LINE L2 -564 2750 2010 275 185 74 86 chrX 49634345 49634426 -112965504 + MER91C DNA MER1_type 31 110 -30 2299 145 27 14 chrX 49635333 49635699 -112964231 + THE1C LTR MaLR 1 371 -4 9881 107 45 26 chrX 49635705 49637194 -112962736 + THE1C-int LTR MaLR 4 1525 -55 1954 138 47 0 chrX 49637194 49637492 -112962438 + AluSx SINE Alu 1 312 0 9881 107 45 26 chrX 49637492 49637550 -112962380 + THE1C-int LTR MaLR 1525 1580 0 1079 144 16 21 chrX 49637551 49637739 -112962191 + THE1C LTR MaLR 2 188 -187 1097 120 27 154 chrX 49637753 49638005 -112961925 + THE1C LTR MaLR 115 326 -49 2009 50 92 8 chrX 49638005 49638288 -112961642 - AluY SINE Alu 0 305 1 1097 120 27 154 chrX 49638288 49638333 -112961597 + THE1C LTR MaLR 326 375 0 204 250 76 76 chrX 49639453 49639545 -112960385 + MIR SINE MIR 58 149 -113 4939 54 76 1 chrX 49639835 49640507 -112959423 - LTR30 LTR ERV1 0 722 1 180 0 0 0 chrX 49640826 49640846 -112959084 + (TTA)n Simple_repeat Simple_repeat 2 21 0 207 0 0 0 chrX 49641381 49641404 -112958526 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chrX 49642672 49642695 -112957235 + (TAAAAA)n Simple_repeat Simple_repeat 3 25 0 518 256 96 19 chrX 49643234 49643390 -112956540 - MIR SINE MIR -67 195 28 180 179 0 0 chrX 49643560 49643599 -112956331 + (CATA)n Simple_repeat Simple_repeat 4 42 0 207 0 0 0 chrX 49644427 49644450 -112955480 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chrX 49644609 49644635 -112955295 + AT_rich Low_complexity Low_complexity 1 26 0 340 261 61 17 chrX 49644719 49644834 -112955096 + L1ME LINE L1 5705 5824 -297 346 140 58 3 chrX 49644855 49644951 -112954979 + MER4B-int LTR ERV1 1280 1769 -4989 26 0 0 0 chrX 49645083 49645109 -112954821 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chrX 49645249 49645270 -112954660 + (T)n Simple_repeat Simple_repeat 1 21 0 272 232 54 36 chrX 49645542 49645654 -112954276 + L1ME LINE L1 5711 5824 -297 270 148 123 12 chrX 49645675 49645756 -112954174 + LTR57-int LTR ERVL 1317 1406 -3937 * 7486 136 56 49 chrX 49645693 49647846 -112952084 + MER4-int LTR ERV1 1687 4931 -1667 2244 151 3 6 chrX 49647846 49648184 -112951746 - MER1B DNA MER1_type 0 337 1 7486 136 56 49 chrX 49648184 49648260 -112951670 + MER4-int LTR ERV1 4931 5005 -1593 1889 149 46 0 chrX 49648360 49648688 -112951242 + MER41C LTR ERV1 212 554 0 696 158 0 86 chrX 49648688 49648838 -112951092 - MSTA LTR MaLR -126 302 166 323 275 54 12 chrX 49648838 49649005 -112950925 - L1MCc LINE L1 -3739 3202 3029 1750 104 6 79 chrX 49649682 49650000 -112949930 + THE1B LTR MaLR 70 364 0 290 167 17 0 chrX 49650115 49650175 -112949755 + CT-rich Low_complexity Low_complexity 3 63 0 3793 126 65 14 chrX 49650242 49650901 -112949029 - L1PA12 LINE L1 0 6168 5476 1044 251 47 0 chrX 49650989 49651308 -112948622 - L1MCc LINE L1 -6073 350 17 382 291 85 26 chrX 49651377 49651566 -112948364 + MER58C DNA MER1_type 1 200 -15 1301 176 99 82 chrX 49651780 49652317 -112947613 + MER66A LTR ERV1 97 478 0 208 50 0 50 chrX 49653559 49653599 -112946331 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2215 106 0 0 chrX 49653606 49653890 -112946040 + AluSg SINE Alu 3 286 -24 1321 225 68 24 chrX 49654144 49654608 -112945322 + MER110A LTR ERV1 19 479 -12 1246 166 12 20 chrX 49654909 49655156 -112944774 + AluJo SINE Alu 45 289 -23 189 0 0 0 chrX 49655285 49655306 -112944624 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1963 141 3 3 chrX 49655498 49655797 -112944133 - AluSx SINE Alu -12 300 2 3957 67 0 10 chrX 49658808 49659328 -112940602 - L1PA7 LINE L1 -3 6151 5637 1453 190 14 3 chrX 49659727 49660011 -112939919 + AluJb SINE Alu 1 287 -25 705 309 103 42 chrX 49660437 49660912 -112939018 + L2 LINE L2 2806 3309 -4 2478 30 0 33 chrX 49661422 49661722 -112938208 - AluY SINE Alu -12 299 10 372 319 58 19 chrX 49661771 49661978 -112937952 - MIR SINE MIR -4 258 44 1910 205 188 12 chrX 49662222 49662808 -112937122 + L1MD2 LINE L1 5657 6345 -14 2201 102 20 3 chrX 49664079 49664382 -112935548 + AluSc SINE Alu 1 308 -1 463 262 150 11 chrX 49664914 49665101 -112934829 - MIR SINE MIR -1 261 49 297 238 0 0 chrX 49665528 49665591 -112934339 + L1MA4 LINE L1 1241 1303 -5262 3413 196 10 34 chrX 49665596 49666666 -112933264 + L1MA4 LINE L1 3245 4300 -3265 7367 39 0 0 chrX 49666690 49667710 -112932220 - L1PA5 LINE L1 -5 6149 5130 2700 50 0 0 chrX 49667710 49668067 -112931863 + L1P LINE L1 4629 4985 -1161 945 169 15 0 chrX 49668098 49668299 -112931631 + L1MA4 LINE L1 4377 4580 -2985 699 173 39 0 chrX 49668278 49668434 -112931496 + L1MA4 LINE L1 5886 6047 -1518 * 1702 152 58 9 chrX 49668430 49668772 -112931158 + L1MA4 LINE L1 7081 7439 -280 319 163 35 12 chrX 49668782 49668868 -112931062 + L1MB4 LINE L1 6093 6180 0 334 156 0 55 chrX 49669402 49669504 -112930426 + L1MA8 LINE L1 5573 5661 -639 1472 115 56 28 chrX 49670144 49670432 -112929498 + L1MA8 LINE L1 5778 6073 -218 1109 71 0 0 chrX 49670433 49670587 -112929343 + MER41A LTR ERV1 401 554 0 5161 128 40 8 chrX 49670672 49671644 -112928286 + MER41A-int LTR ERV1 1 1091 -4855 222 37 0 0 chrX 49671644 49671671 -112928259 + (TG)n Simple_repeat Simple_repeat 2 28 0 1218 100 61 64 chrX 49671671 49671938 -112927992 + MER41A-int LTR ERV1 1359 3715 -4101 * 3237 82 4 7 chrX 49671935 49672388 -112927542 + MER41A-int LTR ERV1 5333 5784 -162 3368 86 0 2 chrX 49672520 49672988 -112926942 + MER41A LTR ERV1 1 467 -87 875 122 44 17 chrX 49672991 49673171 -112926759 + L1MA8 LINE L1 6059 6243 -48 2702 181 35 33 chrX 49673215 49673791 -112926139 + LTR22 LTR ERVK 1 577 -3 645 132 0 0 chrX 49673826 49673917 -112926013 + FLAM_A SINE Alu 36 126 -16 23 0 0 0 chrX 49673958 49673981 -112925949 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 49674094 49674115 -112925815 + AT_rich Low_complexity Low_complexity 1 21 0 184 266 57 89 chrX 49674240 49674364 -112925566 + L2 LINE L2 3156 3275 -38 848 226 43 24 chrX 49674696 49674904 -112925026 + MIR SINE MIR 22 233 -29 1123 130 0 0 chrX 49676134 49676296 -112923634 + AluSg/x SINE Alu 121 282 -30 407 136 49 0 chrX 49676599 49676680 -112923250 - MIR SINE MIR -81 181 97 665 237 93 29 chrX 49677685 49677995 -112921935 + LTR30 LTR ERV1 108 399 -94 279 203 0 0 chrX 49678681 49678740 -112921190 + (CTA)n Simple_repeat Simple_repeat 1 59 0 408 304 13 25 chrX 49678828 49678986 -112920944 - MIR SINE MIR -106 156 1 648 242 146 55 chrX 49679237 49679786 -112920144 - MLT1F1 LTR MaLR 0 595 1 1939 155 3 0 chrX 49679913 49680203 -112919727 + AluJb SINE Alu 3 293 -19 287 279 33 13 chrX 49680206 49680361 -112919569 + L1MC/D LINE L1 5645 5800 -321 5457 126 28 45 chrX 49680713 49681435 -112918495 + MER4A-int LTR ERV1 5510 6208 -390 2823 7 0 0 chrX 49681435 49681741 -112918189 - AluYa5 SINE Alu -5 306 1 5457 126 28 45 chrX 49681741 49682122 -112917808 + MER4A-int LTR ERV1 6208 6594 -4 4515 91 7 46 chrX 49682131 49682822 -112917108 + MER4A LTR ERV1 1 664 0 25 0 0 0 chrX 49682838 49682863 -112917067 + AT_rich Low_complexity Low_complexity 1 25 0 2468 63 0 28 chrX 49682892 49683211 -112916719 - AluY SINE Alu -1 310 1 751 178 0 0 chrX 49683671 49683800 -112916130 - FRAM SINE Alu -10 166 38 184 373 172 12 chrX 49684615 49685028 -112914902 - L2 LINE L2 -340 2974 2496 278 211 28 28 chrX 49685035 49685106 -112914824 + L2 LINE L2 3236 3306 -7 2373 82 0 31 chrX 49685483 49685802 -112914128 - AluSg SINE Alu -1 309 1 1989 105 10 7 chrX 49686800 49687094 -112912836 + AluSx SINE Alu 1 295 -17 1955 104 34 6 chrX 49687918 49688245 -112911685 + L1MA4 LINE L1 5965 6300 0 370 209 27 55 chrX 49689729 49689839 -112910091 - L2 LINE L2 -5 3308 3202 212 280 130 42 chrX 49691136 49691375 -112908555 + L2 LINE L2 763 1022 -2292 379 299 153 28 chrX 49691462 49691750 -112908180 + L2 LINE L2 1323 1646 -1668 1817 148 80 16 chrX 49692016 49692393 -112907537 + MER31A LTR ERV1 85 485 0 275 292 83 8 chrX 49692393 49692513 -112907417 + L2 LINE L2 1545 1673 -1641 777 77 8 17 chrX 49692999 49693116 -112906814 - MSTB LTR MaLR 0 426 311 711 123 174 58 chrX 49693119 49693274 -112906656 + MER41C LTR ERV1 1 173 -381 381 256 30 45 chrX 49694262 49694395 -112905535 + L2 LINE L2 3183 3313 0 188 295 62 85 chrX 49694398 49694424 -112905506 + L2 LINE L2 3142 3167 -105 5164 106 22 12 chrX 49694424 49694727 -112905203 - LTR19C LTR ERV1 0 779 481 183 42 0 0 chrX 49694727 49694751 -112905179 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5164 106 22 12 chrX 49694751 49695218 -112904712 - LTR19C LTR ERV1 -298 481 1 188 295 62 85 chrX 49695218 49695320 -112904610 + L2 LINE L2 3167 3267 -5 781 198 91 58 chrX 49695745 49695981 -112903949 - MER90 LTR ERV1 -6 608 365 5163 137 44 12 chrX 49695981 49696790 -112903140 - MER49 LTR ERV1 0 923 82 1246 214 87 88 chrX 49696790 49697402 -112902528 + LTR36 LTR ERV1 1 611 0 5163 137 44 12 chrX 49697402 49697486 -112902444 - MER49 LTR ERV1 -841 82 2 269 275 0 0 chrX 49697500 49697580 -112902350 - MER90 LTR ERV1 -260 354 275 3394 155 56 26 chrX 49697581 49698260 -112901670 - MER50 LTR ERV1 -23 711 13 504 297 5 36 chrX 49698373 49698568 -112901362 - MER110-int LTR ERV1 -1851 2796 2608 24 0 0 0 chrX 49700061 49700085 -112899845 + AT_rich Low_complexity Low_complexity 1 24 0 200 175 33 25 chrX 49700200 49700320 -112899610 + (TA)n Simple_repeat Simple_repeat 1 121 0 558 289 77 34 chrX 49700383 49700681 -112899249 - Charlie2 DNA MER1_type -2521 341 31 213 214 112 11 chrX 49701751 49701840 -112898090 + MIR SINE MIR 109 206 -56 481 333 12 39 chrX 49701909 49702167 -112897763 + MIR SINE MIR 11 261 -1 1555 137 3 40 chrX 49702489 49702789 -112897141 - L1MA9 LINE L1 -370 5942 5654 1640 176 36 3 chrX 49702789 49703124 -112896806 + L1MA9 LINE L1 5965 6311 -1 22 0 0 0 chrX 49703169 49703191 -112896739 + AT_rich Low_complexity Low_complexity 1 22 0 1807 174 8 65 chrX 49704753 49705231 -112894699 + L1MA7 LINE L1 5757 6207 -84 387 113 0 0 chrX 49705643 49705705 -112894225 + (CA)n Simple_repeat Simple_repeat 1 62 0 191 107 36 89 chrX 49707369 49707425 -112892505 + MER5C DNA MER1_type 267 319 -5 322 231 0 33 chrX 49710116 49710207 -112889723 - MIR SINE MIR -48 214 127 1651 182 5 57 chrX 49710555 49710924 -112889006 - MLT1B LTR MaLR 0 390 41 5286 156 23 22 chrX 49710959 49712259 -112887671 - L1MA7 LINE L1 -4 6287 4984 25 31 0 0 chrX 49712465 49712497 -112887433 + AT_rich Low_complexity Low_complexity 1 32 0 1118 176 5 15 chrX 49712704 49712909 -112887021 - L1PA15 LINE L1 0 6165 5963 15221 144 24 10 chrX 49712922 49717549 -112882381 - L1MA3 LINE L1 0 7724 3019 2342 121 0 0 chrX 49717549 49717862 -112882068 - AluSq SINE Alu 0 313 1 15221 144 24 10 chrX 49717862 49718508 -112881422 - L1MA3 LINE L1 -4705 3019 2383 29332 99 15 22 chrX 49718532 49724987 -112874943 - L1PA7 LINE L1 -4 6465 6 1942 212 13 2 chrX 49725002 49725464 -112874466 - L1P LINE L1 -1490 4656 4190 503 346 71 18 chrX 49725504 49726009 -112873921 + L1M4 LINE L1 4388 4919 -1227 239 299 127 13 chrX 49728069 49728226 -112871704 + MIR3 SINE MIR 33 207 -1 2459 64 0 0 chrX 49728425 49728721 -112871209 - AluY SINE Alu -15 296 1 1061 201 43 74 chrX 49737100 49737399 -112862531 + AluJo SINE Alu 1 290 -12 930 182 131 28 chrX 49737456 49737542 -112862388 + MER21B LTR ERV1 1 77 -786 2027 104 0 0 chrX 49737542 49737801 -112862129 - AluSc SINE Alu -14 295 37 930 182 131 28 chrX 49737801 49737928 -112862002 + MER21B LTR ERV1 77 236 -627 925 218 46 18 chrX 49737941 49738225 -112861705 - HERVL68 LTR ERVL -910 2127 1836 659 291 54 52 chrX 49738248 49738476 -112861454 - HERVL68 LTR ERVL -2281 756 530 1561 185 7 7 chrX 49738476 49738763 -112861167 - AluJo SINE Alu -25 287 1 659 291 54 52 chrX 49738763 49739196 -112860734 - HERVL68 LTR ERVL -2507 530 9 272 119 0 0 chrX 49739248 49739290 -112860640 - MER77 LTR ERV1 0 605 564 470 279 155 9 chrX 49739322 49739548 -112860382 + L2 LINE L2 1525 1783 -1531 279 273 61 0 chrX 49739575 49739674 -112860256 + L1M4 LINE L1 4639 4743 -1403 35 41 0 0 chrX 49739674 49739723 -112860207 + AT_rich Low_complexity Low_complexity 1 49 0 413 208 141 7 chrX 49739751 49739900 -112860030 + L1M4 LINE L1 4751 4919 -1227 248 361 47 26 chrX 49739943 49740134 -112859796 + L2 LINE L2 3078 3272 0 563 336 52 11 chrX 49740249 49740535 -112859395 + REP3 LTR ERV 3 300 -262 251 300 48 14 chrX 49740936 49741146 -112858784 + MER113 DNA MER1_type? 11 227 -294 297 367 41 6 chrX 49741218 49741387 -112858543 - MIR SINE MIR -62 200 26 1410 155 43 19 chrX 49741546 49741804 -112858126 - MER21B LTR ERV1 -422 441 178 3848 217 6 26 chrX 49741865 49742694 -112857236 - L1 LINE L1 -3007 3841 3040 2213 103 7 10 chrX 49742694 49742994 -112856936 + AluSq SINE Alu 1 299 -14 3848 217 6 26 chrX 49742994 49743258 -112856672 - L1 LINE L1 -3808 3040 2772 3077 170 35 13 chrX 49743239 49743920 -112856010 - L1PBa LINE L1 -4118 2745 2050 * 382 123 386 9 chrX 49744272 49744386 -112855544 - MER4C LTR ERV1 -18 447 291 1430 148 55 49 chrX 49744514 49744858 -112855072 - MER4A LTR ERV1 -318 346 1 15595 98 54 22 chrX 49744874 49747030 -112852900 - MER4A-int LTR ERV1 -4 6594 4335 2440 76 3 0 chrX 49747030 49747331 -112852599 + AluY SINE Alu 1 302 -9 15595 98 54 22 chrX 49747331 49747847 -112852083 - MER4A-int LTR ERV1 -2263 4335 3837 416 152 18 30 chrX 49747840 49748001 -112851929 - MER4A-int LTR ERV1 -2911 3687 3438 * 971 80 0 16 chrX 49748003 49748128 -112851802 + AluSq/x SINE Alu 13 135 -178 2044 133 0 10 chrX 49748128 49748422 -112851508 + AluSx SINE Alu 1 291 -21 2972 127 90 8 chrX 49748422 49749075 -112850855 - MER4A-int LTR ERV1 -3154 3444 2738 1145 129 147 4 chrX 49749076 49749301 -112850629 + LTR8 LTR ERV1 1 257 -434 1151 102 10 0 chrX 49749301 49749498 -112850432 - MER4A-int LTR ERV1 -4103 2495 2297 * 3376 127 15 54 chrX 49749497 49750181 -112849749 - MER4A-int LTR ERV1 -3762 1253 597 6086 40 0 0 chrX 49750187 49750916 -112849014 - L1PA3 LINE L1 -3 6152 5424 211 259 19 0 chrX 49750925 49750979 -112848951 - L2 LINE L2 -518 2796 2742 25 0 0 0 chrX 49750994 49751019 -112848911 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 49751319 49751347 -112848583 + AT_rich Low_complexity Low_complexity 1 28 0 255 224 0 0 chrX 49751465 49751514 -112848416 - L1MD2 LINE L1 -88 6271 6223 4757 130 124 52 chrX 49751639 49752746 -112847184 - MER4A-int LTR ERV1 -5411 1187 1 1754 138 3 27 chrX 49752748 49753102 -112846828 - MER4A LTR ERV1 0 664 261 552 96 53 11 chrX 49753102 49753196 -112846734 - MER4A LTR ERV1 -566 98 1 1054 98 0 0 chrX 49753196 49753339 -112846591 + MER4B LTR ERV1 468 610 0 1026 198 90 11 chrX 49753339 49753617 -112846313 - MER4A-int LTR ERV1 -118 6213 5914 554 202 32 3 chrX 49753612 49753776 -112846154 - LTR49-int LTR ERV1 -406 5790 4351 * 3909 129 16 49 chrX 49753853 49754545 -112845385 - LTR8 LTR ERV1 -22 669 1 3715 148 80 8 chrX 49754551 49755305 -112844625 - LTR49-int LTR ERV1 -682 5649 4842 854 286 40 2 chrX 49755410 49755808 -112844122 - L1M4 LINE L1 -1846 4300 3888 2335 60 39 0 chrX 49755809 49756094 -112843836 - AluSg SINE Alu -14 296 1 324 299 43 48 chrX 49756094 49756281 -112843649 - HAL1 LINE L1 -1206 1301 1116 2242 81 7 0 chrX 49757612 49757896 -112842034 - AluY SINE Alu -25 286 1 1143 161 16 8 chrX 49757897 49758139 -112841791 - L1 LINE L1 -1590 5975 5732 644 236 68 26 chrX 49758146 49758490 -112841440 - L1 LINE L1 -3864 3701 3346 627 221 29 0 chrX 49758494 49758634 -112841296 + L1P LINE L1 4634 4777 -1369 * 1445 238 68 40 chrX 49758627 49758713 -112841217 - L1 LINE L1 -4210 3355 3273 405 0 0 0 chrX 49758713 49758758 -112841172 + (TG)n Simple_repeat Simple_repeat 2 46 0 1888 158 7 0 chrX 49758760 49759051 -112840879 - AluSx SINE Alu -19 293 1 1445 238 68 40 chrX 49759051 49759516 -112840414 - L1 LINE L1 -4292 3273 2785 4324 184 60 7 chrX 49759522 49761074 -112838856 + L1MA9 LINE L1 4647 6283 -29 1769 208 51 62 chrX 49761087 49761390 -112838540 + L1ME LINE L1 4655 4960 -1206 2206 71 0 11 chrX 49761390 49761702 -112838228 + AluY SINE Alu 1 309 0 1769 208 51 62 chrX 49761702 49762236 -112837694 + L1ME LINE L1 4960 5476 -690 25 0 0 0 chrX 49762434 49762459 -112837471 + AT_rich Low_complexity Low_complexity 1 25 0 261 351 36 36 chrX 49762474 49762642 -112837288 + L2 LINE L2 3101 3268 -4 427 317 81 38 chrX 49762787 49763134 -112836796 + REP3 LTR ERV 154 515 -47 233 286 111 10 chrX 49763348 49763547 -112836383 + MER113 DNA MER1_type? 6 224 -297 763 123 57 25 chrX 49763641 49763763 -112836167 - FLAM_C SINE Alu -17 126 1 213 314 77 5 chrX 49763763 49763906 -112836024 - MIR SINE MIR -66 142 45 475 282 131 27 chrX 49764841 49765284 -112834646 + L1M4 LINE L1 3595 4083 -2063 735 286 52 15 chrX 49765393 49765795 -112834135 + L1M4 LINE L1 4071 4487 -1659 180 176 0 0 chrX 49766592 49766626 -112833304 + GA-rich Low_complexity Low_complexity 4 37 0 306 309 73 7 chrX 49767051 49767187 -112832743 - L1M4 LINE L1 -3012 3134 2990 202 326 79 0 chrX 49767425 49767514 -112832416 - MIR SINE MIR -63 145 50 254 261 183 35 chrX 49768298 49768413 -112831517 + L2 LINE L2 3136 3267 -5 902 250 56 3 chrX 49768435 49768719 -112831211 + L1MC4 LINE L1 7515 7813 -229 294 244 26 9 chrX 49768742 49768857 -112831073 + L1MC4 LINE L1 7926 8042 0 268 146 0 0 chrX 49768949 49768990 -112830940 - 5S rRNA rRNA -79 42 2 23 33 0 0 chrX 49769158 49769188 -112830742 + AT_rich Low_complexity Low_complexity 1 30 0 203 250 71 0 chrX 49769944 49770000 -112829930 + MIR SINE MIR 85 144 -118 338 80 13 40 chrX 49770038 49770113 -112829817 + (TA)n Simple_repeat Simple_repeat 1 73 0 225 80 40 20 chrX 49770162 49770212 -112829718 + (TA)n Simple_repeat Simple_repeat 2 52 0 213 228 0 53 chrX 49772878 49772935 -112826995 + (CATA)n Simple_repeat Simple_repeat 2 55 0 671 206 82 24 chrX 49772960 49773130 -112826800 + MLT2B1 LTR ERVL 298 477 -43 279 0 0 0 chrX 49773132 49773163 -112826767 + (CA)n Simple_repeat Simple_repeat 2 32 0 1433 259 48 18 chrX 49773163 49773723 -112826207 + L1M4 LINE L1 4070 4646 -1500 908 109 0 13 chrX 49773804 49773960 -112825970 + MER41B LTR ERV1 482 635 0 4129 132 33 16 chrX 49774045 49774760 -112825170 + MER41B-int LTR ERV1 1 637 -5309 845 119 16 0 chrX 49774761 49774887 -112825043 - AluSc SINE Alu -5 304 177 956 64 0 16 chrX 49774992 49775117 -112824813 - AluSc SINE Alu -186 123 1 3895 144 93 9 chrX 49775117 49776182 -112823748 + MER41B-int LTR ERV1 630 1974 -3972 287 98 59 0 chrX 49776199 49776250 -112823680 + MER41B-int LTR ERV1 2167 2220 -3726 * 1436 114 8 17 chrX 49776246 49776483 -112823447 + MER41B-int LTR ERV1 3355 3589 -3948 10187 87 1 1 chrX 49776485 49777917 -112822013 + L1P LINE L1 2 1433 -4713 13544 38 19 2 chrX 49777917 49780321 -112819609 + L1PA4 LINE L1 3720 6149 -6 2269 163 57 10 chrX 49780321 49780811 -112819119 + MER41B-int LTR ERV1 3697 4209 -3607 905 159 0 0 chrX 49780812 49780944 -112818986 - AluSp/q SINE Alu -21 292 161 1699 117 0 0 chrX 49780946 49781176 -112818754 - AluSq SINE Alu -82 231 2 11746 136 34 23 chrX 49781191 49783821 -112816109 + MER41A-int LTR ERV1 1727 5890 -56 3479 73 2 0 chrX 49783822 49784286 -112815644 + MER41A LTR ERV1 3 467 -87 439 254 35 0 chrX 49784346 49784488 -112815442 - L1MEc LINE L1 -4565 1831 1685 1266 83 0 0 chrX 49784504 49784672 -112815258 - L1PA8 LINE L1 -1 6171 6004 7405 124 44 14 chrX 49784672 49785539 -112814391 - L1P3 LINE L1 -5163 1298 381 207 0 0 0 chrX 49785539 49785562 -112814368 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7405 124 44 14 chrX 49785562 49785950 -112813980 - L1P3 LINE L1 -6080 381 6 2002 202 4 8 chrX 49785966 49786436 -112813494 - L1P LINE L1 -1490 4656 4189 232 275 99 12 chrX 49786700 49786871 -112813059 + L1M4 LINE L1 4629 4814 -1332 24 0 0 0 chrX 49787146 49787170 -112812760 + AT_rich Low_complexity Low_complexity 1 24 0 2409 35 0 0 chrX 49788224 49788510 -112811420 + AluY SINE Alu 1 286 -25 11874 133 34 33 chrX 49788613 49789479 -112810451 - HUERS-P1 LTR ERV1 -1328 3552 2689 2078 125 14 0 chrX 49789479 49789776 -112810154 + AluJo SINE Alu 5 305 -7 11874 133 34 33 chrX 49789776 49791569 -112808361 - HUERS-P1 LTR ERV1 -2191 2689 766 3383 152 120 41 chrX 49791566 49792039 -112807891 - HUERS-P1 LTR ERV1 -5054 1209 1021 * 351 0 0 0 chrX 49792039 49792078 -112807852 + (GA)n Simple_repeat Simple_repeat 2 40 0 3383 152 120 41 chrX 49792078 49792803 -112807127 - HUERS-P1 LTR ERV1 -5242 1021 355 430 288 73 40 chrX 49792899 49793076 -112806854 - HUERS-P1 LTR ERV1 -6044 219 37 693 186 7 21 chrX 49793100 49793245 -112806685 - LTR8A LTR ERV1 0 727 585 1671 130 0 11 chrX 49793255 49793525 -112806405 - L1PA16 LINE L1 -9 6157 5891 4257 168 39 20 chrX 49794231 49794879 -112805051 - L1MC2 LINE L1 -11 6333 5662 2125 116 3 23 chrX 49794879 49795042 -112804888 - AluSx SINE Alu -16 296 140 2210 97 0 3 chrX 49795042 49795331 -112804599 - AluSc SINE Alu -17 292 5 2125 116 3 23 chrX 49795331 49795469 -112804461 - AluSx SINE Alu -172 140 1 4257 168 39 20 chrX 49795469 49795717 -112804213 - L1MC2 LINE L1 -682 5662 5420 1386 162 10 17 chrX 49795717 49795734 -112804196 - L1MC2 LINE L1 -743 5403 5387 3050 117 59 117 chrX 49795734 49796407 -112803523 + MER51A LTR ERV1 1 634 0 1386 162 10 17 chrX 49796407 49796823 -112803107 - L1MC2 LINE L1 -759 5387 5080 2317 85 3 0 chrX 49796824 49797117 -112802813 + AluSg SINE Alu 1 294 -16 311 289 0 22 chrX 49797117 49797207 -112802723 - L1MC4 LINE L1 -1342 6700 6613 217 141 0 31 chrX 49797211 49797275 -112802655 + (TA)n Simple_repeat Simple_repeat 2 63 0 489 235 47 7 chrX 49797279 49797428 -112802502 - L1MC2 LINE L1 -1065 5081 4927 839 156 40 0 chrX 49798086 49798259 -112801671 - L1MA8 LINE L1 0 6291 6112 227 102 0 23 chrX 49798260 49798309 -112801621 - L1MA5A LINE L1 -227 6068 6017 6831 122 19 0 chrX 49799134 49800669 -112799261 - L1MA1 LINE L1 0 6302 4739 3327 224 25 11 chrX 49800700 49801655 -112798275 - L1MA1 LINE L1 -2828 3318 2350 5311 127 19 19 chrX 49801658 49802512 -112797418 - L1PA13 LINE L1 -1 6162 5309 1960 156 0 0 chrX 49802512 49802814 -112797116 - AluSx SINE Alu -9 303 2 5311 127 19 19 chrX 49802814 49803932 -112795998 - L1PA13 LINE L1 -853 5310 4189 388 326 91 31 chrX 49803980 49804473 -112795457 + L1M4 LINE L1 4400 4916 -1230 2310 107 0 0 chrX 49804522 49804832 -112795098 - AluY SINE Alu -1 310 1 226 200 0 33 chrX 49805843 49805903 -112794027 - MER58 DNA MER1_type -110 231 174 23 0 0 0 chrX 49806409 49806432 -112793498 + AT_rich Low_complexity Low_complexity 1 23 0 390 315 105 14 chrX 49806904 49807066 -112792864 - L1M4 LINE L1 -6299 243 54 216 0 0 0 chrX 49807066 49807090 -112792840 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 390 315 105 14 chrX 49807090 49807146 -112792784 - L1M4 LINE L1 -6488 54 5 201 368 184 24 chrX 49807172 49807384 -112792546 - L2 LINE L2 -9 3263 3018 485 202 0 0 chrX 49807827 49807911 -112792019 + AluJ/FLAM SINE Alu 1 84 -228 604 189 119 0 chrX 49807959 49808118 -112791812 + L1MA8 LINE L1 6114 6291 0 23 54 0 0 chrX 49808524 49808561 -112791369 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrX 49808874 49808895 -112791035 + AT_rich Low_complexity Low_complexity 1 21 0 9546 47 106 1 chrX 49809012 49810099 -112789831 - L1P LINE L1 -3045 3101 2129 5927 37 1 0 chrX 49810099 49810804 -112789126 + L1PA3 LINE L1 5449 6154 -1 207 0 0 0 chrX 49810807 49810830 -112789100 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9546 47 106 1 chrX 49810830 49811130 -112788800 - L1P LINE L1 -4018 2128 1564 1554 129 14 37 chrX 49811130 49811425 -112788505 - L1P4 LINE L1 -569 5914 5627 1650 176 3 3 chrX 49811431 49811737 -112788193 - AluSx SINE Alu 0 306 1 740 179 8 8 chrX 49811737 49811871 -112788059 - AluSq/x SINE Alu -177 135 2 4512 197 10 33 chrX 49811889 49813036 -112786894 - L1P4 LINE L1 -837 5624 4505 535 337 68 19 chrX 49813076 49813489 -112786441 + L1M4 LINE L1 4388 4820 -1326 22 0 0 0 chrX 49815183 49815205 -112784725 + AT_rich Low_complexity Low_complexity 1 22 0 523 85 32 0 chrX 49815329 49815423 -112784507 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 312 314 135 24 chrX 49815771 49815978 -112783952 - L1M4 LINE L1 -6298 244 15 229 383 168 19 chrX 49816009 49816223 -112783707 - L2 LINE L2 -9 3263 3018 504 179 0 0 chrX 49816667 49816751 -112783179 + AluJ/FLAM SINE Alu 1 84 -228 646 168 90 30 chrX 49816800 49816967 -112782963 + L1MA8 LINE L1 6114 6290 -1 8023 129 21 34 chrX 49817228 49818938 -112780992 - L1P4 LINE L1 -4314 2147 433 22 0 0 0 chrX 49819029 49819051 -112780879 + AT_rich Low_complexity Low_complexity 1 22 0 450 312 19 13 chrX 49819627 49819784 -112780146 - MIR SINE MIR -46 216 59 399 243 34 29 chrX 49819774 49819904 -112780026 + MIR SINE MIR 23 149 -63 * 335 303 6 62 chrX 49820579 49820741 -112779189 - L2 LINE L2 0 3313 3161 544 227 0 8 chrX 49820882 49821010 -112778920 - L1MDa LINE L1 -6219 425 299 186 103 0 0 chrX 49821289 49821318 -112778612 + (TG)n Simple_repeat Simple_repeat 2 30 0 257 169 17 0 chrX 49821330 49821389 -112778541 + (TA)n Simple_repeat Simple_repeat 1 60 0 216 0 0 0 chrX 49821455 49821479 -112778451 + (CA)n Simple_repeat Simple_repeat 2 25 0 557 155 0 0 chrX 49822163 49822247 -112777683 + AluJ/FLAM SINE Alu 1 84 -228 646 168 90 30 chrX 49822296 49822463 -112777467 + L1MA8 LINE L1 6114 6290 -1 21 0 0 0 chrX 49823231 49823252 -112776678 + AT_rich Low_complexity Low_complexity 1 21 0 1185 227 60 41 chrX 49823542 49824003 -112775927 + LTR19C LTR ERV1 130 779 0 4091 199 25 23 chrX 49824003 49824745 -112775185 - L1 LINE L1 -2115 4031 3285 1637 169 11 4 chrX 49824745 49825017 -112774913 - AluSx SINE Alu -1 311 38 4091 199 25 23 chrX 49825017 49825334 -112774596 - L1 LINE L1 -2861 3285 2970 351 0 0 0 chrX 49825436 49825475 -112774455 + (TC)n Simple_repeat Simple_repeat 2 40 0 435 149 0 0 chrX 49825475 49825549 -112774381 + (TA)n Simple_repeat Simple_repeat 2 75 0 265 250 114 30 chrX 49825879 49826011 -112773919 - L1MDa LINE L1 -6298 244 102 216 0 0 0 chrX 49826039 49826063 -112773867 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 235 372 167 17 chrX 49826141 49826321 -112773609 - L2 LINE L2 -9 3263 3057 526 155 0 0 chrX 49826803 49826887 -112773043 + AluJ/FLAM SINE Alu 1 84 -228 666 164 91 12 chrX 49826936 49827101 -112772829 + L1MA8 LINE L1 6114 6291 0 22 0 0 0 chrX 49827862 49827884 -112772046 + AT_rich Low_complexity Low_complexity 1 22 0 1199 242 53 45 chrX 49828138 49828632 -112771298 + LTR19C LTR ERV1 137 779 0 6428 203 21 20 chrX 49828636 49829374 -112770556 - L1 LINE L1 -2119 4027 3291 1621 164 11 7 chrX 49829374 49829648 -112770282 - AluSx SINE Alu 0 312 38 6428 203 21 20 chrX 49829648 49830586 -112769344 - L1 LINE L1 -2855 3291 2350 4756 127 5 34 chrX 49830582 49831459 -112768471 - L1PA13 LINE L1 -1 6162 5312 * 1106 164 6 0 chrX 49831464 49831647 -112768283 - AluSg/x SINE Alu -7 305 122 922 197 5 0 chrX 49831647 49831840 -112768090 - L1PA15-16 LINE L1 -3777 3072 2879 2427 80 0 6 chrX 49831874 49832187 -112767743 - AluY SINE Alu 0 311 1 21 0 0 0 chrX 49832432 49832453 -112767477 + AT_rich Low_complexity Low_complexity 1 21 0 310 225 25 0 chrX 49832541 49832621 -112767309 - L1M4 LINE L1 -1664 4482 4401 1279 218 47 88 chrX 49832714 49833201 -112766729 + LTR19C LTR ERV1 313 779 0 6515 196 22 28 chrX 49833201 49833962 -112765968 - L1M4 LINE L1 -2115 4031 3267 1652 182 0 0 chrX 49833962 49834237 -112765693 - AluSx SINE Alu 0 312 38 6515 196 22 28 chrX 49834237 49835168 -112764762 - L1M4 LINE L1 -2879 3267 2350 2805 10 0 3 chrX 49835187 49835498 -112764432 - AluYa5 SINE Alu -1 310 1 5059 152 40 12 chrX 49835504 49836359 -112763571 - L1PA13 LINE L1 -2 6161 5331 2041 145 0 7 chrX 49836359 49836669 -112763261 - AluSx SINE Alu -4 308 1 207 114 0 0 chrX 49836676 49836711 -112763219 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5059 152 40 12 chrX 49836711 49837344 -112762586 - L1PA13 LINE L1 -837 5326 4644 20529 98 11 2 chrX 49837354 49841429 -112758501 - L1PA8 LINE L1 0 6487 2376 39933 61 3 0 chrX 49841440 49847576 -112752354 - L1PA5 LINE L1 0 6154 3 9946 147 33 26 chrX 49847577 49849923 -112750007 - L1PA8 LINE L1 -4071 2390 24 1824 113 3 3 chrX 49849937 49850230 -112749700 - L1PA15-16 LINE L1 -4145 2704 2412 2355 157 34 0 chrX 49850374 49850781 -112749149 + MSTB LTR MaLR 6 426 0 9255 173 12 10 chrX 49850781 49852428 -112747502 + MSTB-int LTR MaLR 1 1651 0 2436 161 31 5 chrX 49852428 49852843 -112747087 + MSTB LTR MaLR 1 426 0 835 231 5 29 chrX 49852855 49852942 -112746988 - L1ME LINE L1 -488 5678 5590 1583 214 36 11 chrX 49852942 49853298 -112746632 + MLT1A1 LTR MaLR 1 365 0 835 231 5 29 chrX 49853298 49853418 -112746512 - L1ME LINE L1 -576 5590 5476 699 236 165 7 chrX 49853450 49853747 -112746183 - L1ME LINE L1 -2184 3962 3619 2025 180 32 34 chrX 49853748 49854294 -112745636 - MLT2A2 LTR ERVL -8 546 1 7816 183 20 11 chrX 49854428 49857135 -112742795 + L1PA16 LINE L1 3440 6165 -1 339 265 37 62 chrX 49857148 49857462 -112742468 - L1ME LINE L1 -2669 3477 3170 2396 50 0 0 chrX 49857462 49857760 -112742170 - L1PA8 LINE L1 0 6172 5875 7221 89 3 15 chrX 49857760 49858820 -112741110 - L1P3 LINE L1 -5407 1054 8 6586 153 15 18 chrX 49858827 49859009 -112740921 - L1M1 LINE L1 -521 5781 5600 2061 125 6 13 chrX 49859009 49859320 -112740610 - AluSg1 SINE Alu 0 309 1 6586 153 15 18 chrX 49859320 49860928 -112739002 - L1M1 LINE L1 -702 5600 4006 5455 109 27 3 chrX 49860944 49862009 -112737921 - L1PB2 LINE L1 -10 6141 5063 1032 174 46 0 chrX 49862018 49862236 -112737694 - L1 LINE L1 -743 5403 5176 1891 154 73 5 chrX 49862264 49862646 -112737284 + L1MA5A LINE L1 5884 6291 -6 6965 93 17 1 chrX 49862786 49863868 -112736062 + L1M1 LINE L1 1950 3048 -4517 1793 289 12 68 chrX 49863867 49864845 -112735085 + L1P3 LINE L1 2 924 -4951 * 18240 35 2 0 chrX 49864845 49867809 -112732121 + L1PA4 LINE L1 3188 6152 -3 14438 141 18 0 chrX 49867821 49871100 -112728830 + L1PA10 LINE L1 2827 6166 -2 7227 140 12 8 chrX 49871103 49873511 -112726419 + L1MA2 LINE L1 3890 6304 0 22 56 0 0 chrX 49873511 49873547 -112726383 + AT_rich Low_complexity Low_complexity 1 36 0 1129 200 3 28 chrX 49873547 49873837 -112726093 - L1 LINE L1 -1286 4860 4578 202 29 57 0 chrX 49873909 49873944 -112725986 + (TA)n Simple_repeat Simple_repeat 1 37 0 252 0 0 0 chrX 49873944 49873972 -112725958 + (T)n Simple_repeat Simple_repeat 1 28 0 7775 150 55 19 chrX 49874080 49875530 -112724400 - L1PA15-16 LINE L1 -4431 2418 916 322 305 21 43 chrX 49875674 49875815 -112724115 + MER5A DNA MER1_type 7 144 -45 204 355 43 14 chrX 49875855 49875993 -112723937 + L2 LINE L2 2907 3048 -224 727 271 33 41 chrX 49876427 49876671 -112723259 - MIR SINE MIR -18 244 3 332 301 173 0 chrX 49877653 49877786 -112722144 - MIR SINE MIR -2 260 105 264 100 0 0 chrX 49877970 49878010 -112721920 + (TC)n Simple_repeat Simple_repeat 1 40 0 190 314 289 0 chrX 49879566 49879687 -112720243 + MIR3 SINE MIR 47 202 -6 180 277 231 0 chrX 49879873 49880003 -112719927 + MIR SINE MIR 31 190 -72 571 217 0 0 chrX 49881243 49881349 -112718581 + MLT1E LTR MaLR 1 106 -487 9219 171 15 8 chrX 49881361 49884451 -112715479 - L1PB1 LINE L1 -4 6355 3217 3926 196 26 13 chrX 49884451 49885505 -112714425 - L1MD1 LINE L1 -163 6473 5400 * 20224 48 3 0 chrX 49885479 49889765 -112710165 - L1PA5 LINE L1 -1 6547 2253 620 155 10 0 chrX 49889763 49889860 -112710070 + L1P LINE L1 553 650 -5496 * 558 146 0 0 chrX 49889903 49889985 -112709945 - AluSg/x SINE Alu -16 294 213 2077 256 53 5 chrX 49889985 49890621 -112709309 - L1MD1 LINE L1 -1444 5096 4430 3093 209 74 62 chrX 49890633 49891745 -112708185 - L1M3e LINE L1 -5904 1126 2 3662 250 47 14 chrX 49891762 49892988 -112706942 - L1MD1 LINE L1 -2629 3911 2646 4247 223 69 44 chrX 49893089 49895243 -112704687 - L1MD1 LINE L1 -4134 2406 18 1410 266 110 20 chrX 49895244 49895698 -112704232 + MLT1E LTR MaLR 99 593 0 378 337 89 36 chrX 49896647 49897210 -112702720 + L2 LINE L2 2589 3180 -92 559 291 46 30 chrX 49897572 49897789 -112702141 - MIR SINE MIR -6 256 37 214 281 23 47 chrX 49897894 49898022 -112701908 + L2 LINE L2 2862 2986 -286 214 299 52 13 chrX 49898134 49898211 -112701719 - MIR SINE MIR -131 131 52 1827 224 122 28 chrX 49898305 49898774 -112701156 + MLT2B2 LTR ERVL 1 513 -2 257 319 35 26 chrX 49898776 49898889 -112701041 - MER117 DNA MER1_type -75 122 9 463 236 209 7 chrX 49899357 49899505 -112700425 - MER5A DNA MER1_type 0 189 12 229 260 57 57 chrX 49899774 49899897 -112700033 - MIR SINE MIR -138 124 2 288 303 167 25 chrX 49900085 49900247 -112699683 - MIR SINE MIR -47 215 31 211 256 35 47 chrX 49900556 49900642 -112699288 - L2 LINE L2 0 3272 3188 340 319 25 44 chrX 49901893 49902053 -112697877 - MIR3 SINE MIR -35 173 17 276 234 52 13 chrX 49903251 49903328 -112696602 + MIR SINE MIR 66 145 -117 2477 87 7 0 chrX 49903346 49903685 -112696245 + AluSx SINE Alu 1 341 0 325 275 83 17 chrX 49903974 49904094 -112695836 - L2 LINE L2 -9 3263 3136 193 245 53 43 chrX 49904133 49904227 -112695703 - L2 LINE L2 -677 2637 2543 189 272 123 12 chrX 49904248 49904329 -112695601 + L2 LINE L2 3188 3277 -36 380 294 17 4 chrX 49904605 49904728 -112695202 + MIR SINE MIR 15 141 -67 2470 93 0 0 chrX 49905562 49905873 -112694057 - AluSq SINE Alu -2 311 1 1355 174 19 0 chrX 49906388 49906658 -112693272 - L1MA7 LINE L1 0 6291 6017 1243 274 102 42 chrX 49906953 49907412 -112692518 + MLT1G1 LTR MaLR 66 559 -36 3632 83 2 13 chrX 49907412 49907869 -112692061 + MLT2A2 LTR ERVL 1 452 -1 1243 274 102 42 chrX 49907869 49907909 -112692021 + MLT1G1 LTR MaLR 559 595 0 299 278 21 21 chrX 49908463 49908560 -112691370 + LTR67 LTR ERVL 457 553 -4 245 287 130 27 chrX 49909085 49909308 -112690622 + L1PBb LINE L1 1 246 -6603 2676 107 136 7 chrX 49909435 49909846 -112690084 - MER4C LTR ERV1 -1 464 1 813 264 25 51 chrX 49910803 49911184 -112688746 + L1PBb LINE L1 1418 1863 -4975 8525 159 17 25 chrX 49911197 49912709 -112687221 + L1P LINE L1 11 1511 -4635 19502 42 1 0 chrX 49912709 49915743 -112684187 + L1PA4 LINE L1 3110 6153 -2 9662 201 47 14 chrX 49915743 49916498 -112683432 - L1MA7 LINE L1 -180 6315 5586 2393 97 0 0 chrX 49916498 49916807 -112683123 + AluY SINE Alu 1 309 -2 9662 201 47 14 chrX 49916807 49919475 -112680455 - L1MA7 LINE L1 -909 5586 2728 678 320 30 79 chrX 49919456 49919950 -112679980 - L1MA7 LINE L1 -5187 1094 625 * 2886 262 13 19 chrX 49919967 49920669 -112679261 - L1MA7 LINE L1 -5580 701 4 287 312 0 0 chrX 49971426 49971503 -112628427 - L2 LINE L2 -670 2644 2568 1367 192 63 31 chrX 49971803 49972120 -112627810 - LTR8 LTR ERV1 0 691 365 632 171 107 14 chrX 49972124 49972264 -112627666 - LTR1 LTR ERV1 0 785 633 * 757 129 8 15 chrX 49972259 49972391 -112627539 - LTR1 LTR ERV1 -654 131 1 1439 144 2 187 chrX 49972393 49972837 -112627093 - LTR8 LTR ERV1 -329 362 1 49 76 0 0 chrX 49972942 49973047 -112626883 + AT_rich Low_complexity Low_complexity 1 105 0 327 331 54 50 chrX 49973053 49973263 -112626667 - HAL1 LINE L1 -2 2505 2292 847 133 0 0 chrX 49973263 49973383 -112626547 - FLAM_C SINE Alu -13 120 1 327 331 54 50 chrX 49973383 49973414 -112626516 - HAL1 LINE L1 -215 2292 2263 328 197 13 0 chrX 49973494 49973570 -112626360 - MIR SINE MIR -3 259 183 6931 76 9 1 chrX 49975732 49976992 -112622938 + L1PA7 LINE L1 4874 6139 -15 796 239 26 0 chrX 49977003 49977233 -112622697 - L1 LINE L1 -1638 4508 4273 4717 179 37 45 chrX 49977306 49977895 -112622035 - L1MCa LINE L1 -4796 1630 1038 1020 196 0 0 chrX 49977895 49978053 -112621877 - FAM SINE Alu -17 158 1 4717 179 37 45 chrX 49978053 49978353 -112621577 - L1MCa LINE L1 -5388 1038 749 3056 141 5 0 chrX 49978353 49978785 -112621145 - MER57B LTR ERV1 0 434 1 4717 179 37 45 chrX 49978785 49979009 -112620921 - L1MCa LINE L1 -5677 749 525 2567 160 38 38 chrX 49979032 49979494 -112620436 - Tigger2 DNA MER2_type -1 2717 2256 1518 142 122 52 chrX 49979494 49979715 -112620215 - THE1C LTR MaLR 0 375 120 3426 164 20 78 chrX 49979715 49980448 -112619482 - LTR8 LTR ERV1 0 691 1 1518 142 122 52 chrX 49980448 49980570 -112619360 - THE1C LTR MaLR -255 120 8 10407 127 36 7 chrX 49980572 49982201 -112617729 - Tigger2 DNA MER2_type -463 2255 581 2972 157 105 11 chrX 49982201 49982762 -112617168 + LTR8A LTR ERV1 1 614 -113 4681 128 1 10 chrX 49982954 49983648 -112616282 + L1PA13 LINE L1 5475 6162 -1 298 105 18 18 chrX 49983714 49983771 -112616159 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 1938 246 95 25 chrX 49984511 49985268 -112614662 + L1M4 LINE L1 2242 3051 -3095 813 151 0 0 chrX 49985278 49985397 -112614533 + FLAM_C SINE Alu 1 119 -24 483 219 66 0 chrX 49985409 49985546 -112614384 + L1M4 LINE L1 4992 5137 -1009 524 293 15 34 chrX 49985849 49986054 -112613876 - MIR SINE MIR 0 262 62 198 367 33 25 chrX 49986415 49986535 -112613395 - MER5A DNA MER1_type -1 188 68 467 191 24 0 chrX 49987309 49987393 -112612537 - AluJ/FRAM SINE Alu -11 301 216 649 195 0 0 chrX 49987412 49987525 -112612405 - FLAM_C SINE Alu -28 115 3 297 214 29 0 chrX 49987739 49987809 -112612121 + MER20B DNA MER1_type 36 107 -676 472 291 39 15 chrX 49987830 49988033 -112611897 + MER20B DNA MER1_type 282 489 -294 487 139 25 0 chrX 49988452 49988531 -112611399 - HERVL68 LTR ERVL -58 2979 2899 288 0 0 0 chrX 49988550 49988582 -112611348 + (TG)n Simple_repeat Simple_repeat 1 32 0 1320 268 8 19 chrX 49988613 49988983 -112610947 - MLT2D LTR ERVL -48 366 1 2269 223 30 19 chrX 49988993 49989557 -112610373 - HERVL68 LTR ERVL -144 2893 2324 322 303 55 7 chrX 49990239 49990384 -112609546 - MIR SINE MIR -62 200 49 2925 66 3 5 chrX 49991216 49991596 -112608334 + L1PA8 LINE L1 5793 6171 -1 216 368 18 54 chrX 49991639 49991916 -112608014 - L2 LINE L2 -188 3084 2818 723 230 100 59 chrX 49992000 49992390 -112607540 + MER39 LTR ERV1 1 622 -85 675 186 0 0 chrX 49993135 49993259 -112606671 + FLAM_C SINE Alu 1 124 -9 2464 105 40 9 chrX 49993401 49993792 -112606138 + LTR3 LTR ERVK 1 432 0 222 239 0 0 chrX 49994263 49994309 -112605621 + A-rich Low_complexity Low_complexity 2 47 0 2453 81 7 0 chrX 49995067 49995374 -112604556 - AluSc SINE Alu 0 309 1 17920 83 2 2 chrX 49996951 49999400 -112600530 - L1P LINE L1 -1632 4514 2065 522 30 0 0 chrX 49999400 49999467 -112600463 - L1PA3 LINE L1 0 6155 6089 705 251 116 0 chrX 50001916 50002167 -112597763 - L1M4 LINE L1 -1227 4919 4640 353 297 181 20 chrX 50002202 50002556 -112597374 - L2 LINE L2 -1537 1777 1367 3489 214 32 0 chrX 50002583 50003279 -112596651 + MLT1-int LTR MaLR 201 918 -453 1965 214 46 7 chrX 50003444 50003855 -112596075 + MLT1-int LTR MaLR 937 1363 -8 1065 123 3 207 chrX 50003934 50003994 -112595936 - Tigger1 DNA MER2_type -57 2361 2290 1863 74 0 4 chrX 50003994 50004238 -112595692 + L1PB1 LINE L1 5906 6148 -3 1065 123 3 207 chrX 50004238 50004510 -112595420 - Tigger1 DNA MER2_type -128 2290 2097 2397 167 62 0 chrX 50004733 50005152 -112594778 - Tigger1 DNA MER2_type -324 2094 1650 2845 199 35 0 chrX 50005308 50005851 -112594079 + MER68 LTR ERV1 1 562 0 613 320 31 36 chrX 50005903 50006331 -112593599 + HERVL68 LTR ERVL 9 514 -2523 1620 194 3 7 chrX 50006342 50006636 -112593294 + AluJo SINE Alu 1 293 -19 222 91 0 0 chrX 50006912 50006945 -112592985 + (TC)n Simple_repeat Simple_repeat 1 33 0 28 29 0 0 chrX 50006957 50006992 -112592938 + AT_rich Low_complexity Low_complexity 1 35 0 471 235 12 54 chrX 50006993 50007159 -112592771 - MIR SINE MIR -58 204 46 4656 201 10 1 chrX 50007561 50008490 -112591440 - L1M4 LINE L1 -1748 4398 3462 411 168 11 53 chrX 50008473 50008568 -112591362 - L1P LINE L1 -2583 3563 3473 * 6909 65 4 8 chrX 50008568 50009552 -112590378 - L1PA6 LINE L1 -3 6151 5167 522 288 19 0 chrX 50009844 50010004 -112589926 + MIR SINE MIR 90 252 -10 545 128 11 0 chrX 50010199 50010293 -112589637 + L1MA7 LINE L1 6191 6285 -6 1809 127 0 107 chrX 50010515 50010861 -112589069 + AluSx SINE Alu 1 309 -3 335 282 97 41 chrX 50010894 50011089 -112588841 - L3 LINE CR1 -7 1570 1365 281 325 56 90 chrX 50011141 50011656 -112588274 - L2 LINE L2 -50 3222 2720 1575 155 70 7 chrX 50013125 50013396 -112586534 - AluSx SINE Alu -24 288 1 2192 120 3 3 chrX 50013513 50013812 -112586118 - AluSx SINE Alu -13 299 1 489 337 132 22 chrX 50013818 50014228 -112585702 - L3 LINE CR1 -343 1234 780 370 331 8 8 chrX 50014369 50014493 -112585437 - L3 LINE CR1 -827 750 627 314 230 0 14 chrX 50015606 50015680 -112584250 - MER52A LTR ERV1 -4 1751 1679 * 3819 197 74 85 chrX 50015668 50016851 -112583079 - MER52A LTR ERV1 -561 1194 25 1547 135 106 14 chrX 50018348 50018649 -112581281 - AluSx SINE Alu 0 312 2 2053 188 26 114 chrX 50019541 50020094 -112579836 + MLT2B3 LTR ERVL 1 498 -56 486 0 0 0 chrX 50020094 50020148 -112579782 + (TG)n Simple_repeat Simple_repeat 2 55 0 2053 188 26 114 chrX 50020148 50020201 -112579729 + MLT2B3 LTR ERVL 498 554 0 582 263 62 11 chrX 50021017 50021196 -112578734 + MER5A DNA MER1_type 2 189 0 187 227 160 13 chrX 50021541 50021616 -112578314 + L2 LINE L2 3228 3313 0 296 245 77 49 chrX 50022548 50022707 -112577223 - MIR SINE MIR -68 140 5 291 114 0 0 chrX 50022713 50022757 -112577173 + (TC)n Simple_repeat Simple_repeat 1 44 0 323 207 0 9 chrX 50024321 50024432 -112575498 + C-rich Low_complexity Low_complexity 4 113 0 50 114 0 0 chrX 50026569 50026815 -112573115 + AT_rich Low_complexity Low_complexity 1 246 0 26 30 0 0 chrX 50027200 50027233 -112572697 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 50027298 50027319 -112572611 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chrX 50027418 50027447 -112572483 + AT_rich Low_complexity Low_complexity 1 29 0 203 374 37 0 chrX 50028016 50028123 -112571807 + L2 LINE L2 2952 3062 -251 251 193 29 164 chrX 50028947 50029087 -112570843 + MLT1K LTR MaLR 129 249 -339 626 212 71 38 chrX 50029216 50029400 -112570530 + MLT1K LTR MaLR 391 580 -8 351 327 64 45 chrX 50029645 50029865 -112570065 - MIR SINE MIR -15 247 24 196 372 32 6 chrX 50031089 50031245 -112568685 + L2 LINE L2 1747 1906 -1408 1364 170 18 102 chrX 50032803 50033145 -112566785 - MLT2A2 LTR ERVL -140 313 1 1214 281 51 13 chrX 50033147 50033599 -112566331 - Charlie4a DNA MER1_type -1 507 39 1100 239 33 41 chrX 50033802 50033993 -112565937 + L1M4 LINE L1 2490 2681 -3465 1148 175 117 61 chrX 50033993 50034319 -112565611 + MER2 DNA MER2_type 1 344 0 1100 239 33 41 chrX 50034319 50034358 -112565572 + L1M4 LINE L1 2681 2719 -3427 507 238 181 36 chrX 50034358 50034551 -112565379 - MER58A DNA MER1_type 0 224 4 1100 239 33 41 chrX 50034551 50034738 -112565192 + L1M4 LINE L1 2719 2905 -3241 773 213 96 52 chrX 50034824 50035115 -112564815 + L1M4 LINE L1 3679 3982 -2164 518 204 9 0 chrX 50035112 50035225 -112564705 - L1M4 LINE L1 -884 5262 5149 * 3831 169 76 87 chrX 50035219 50035461 -112564469 - L1MA5A LINE L1 0 6297 6054 2208 93 0 10 chrX 50035461 50035761 -112564169 + AluSx SINE Alu 1 297 -15 3831 169 76 87 chrX 50035761 50036785 -112563145 - L1MA5A LINE L1 -243 6054 5046 232 276 8 60 chrX 50036791 50036925 -112563005 + MIR SINE MIR 125 251 -11 391 306 198 16 chrX 50036928 50037242 -112562688 + L2 LINE L2 2888 3258 -55 265 209 337 0 chrX 50037300 50037386 -112562544 - MIR SINE MIR -97 165 51 297 0 0 0 chrX 50039033 50039066 -112560864 + (T)n Simple_repeat Simple_repeat 1 33 0 2246 105 0 3 chrX 50040543 50040873 -112559057 + AluSg SINE Alu 1 329 0 2224 103 3 10 chrX 50041575 50041887 -112558043 + AluSx SINE Alu 1 310 -2 219 36 0 0 chrX 50042975 50043003 -112556927 + (CA)n Simple_repeat Simple_repeat 2 29 0 523 246 80 78 chrX 50043757 50044257 -112555673 - L1MC5 LINE L1 -10 7951 7451 252 100 0 0 chrX 50045301 50045341 -112554589 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 288 284 32 0 chrX 50045701 50045796 -112554134 + Charlie7 DNA MER1_type 4 101 -2511 * 385 184 34 75 chrX 50045788 50045935 -112553995 + Charlie7 DNA MER1_type 2434 2574 -38 1931 191 48 35 chrX 50045943 50046399 -112553531 - MLT1C LTR MaLR 0 467 6 472 312 68 43 chrX 50047082 50047316 -112552614 + MIR SINE MIR 12 251 -11 380 235 23 91 chrX 50047644 50047776 -112552154 - L2 LINE L2 0 3313 3191 357 24 0 0 chrX 50048178 50048220 -112551710 + (GA)n Simple_repeat Simple_repeat 1 42 0 183 129 0 0 chrX 50050095 50050126 -112549804 + (GA)n Simple_repeat Simple_repeat 2 32 0 191 289 0 0 chrX 50050199 50050244 -112549686 + MIR SINE MIR 106 150 -112 29 60 0 0 chrX 50050797 50050847 -112549083 + AT_rich Low_complexity Low_complexity 1 50 0 511 259 55 68 chrX 50051293 50051602 -112548328 + MER5C DNA MER1_type 17 321 -3 233 173 58 0 chrX 50052444 50052496 -112547434 + LTR13 LTR ERVK 661 715 -292 186 43 0 0 chrX 50052496 50052519 -112547411 + (TC)n Simple_repeat Simple_repeat 2 24 0 438 65 0 0 chrX 50052519 50052581 -112547349 + (CA)n Simple_repeat Simple_repeat 1 62 0 360 0 0 0 chrX 50052629 50052669 -112547261 + (TG)n Simple_repeat Simple_repeat 2 41 0 397 345 65 0 chrX 50053107 50053307 -112546623 + MIR SINE MIR 36 248 -14 4139 255 49 47 chrX 50053434 50055009 -112544921 + L2 LINE L2 1545 3114 -199 189 0 0 0 chrX 50055009 50055030 -112544900 + (CCA)n Simple_repeat Simple_repeat 2 22 0 4139 255 49 47 chrX 50055030 50055231 -112544699 + L2 LINE L2 3114 3313 0 286 340 77 30 chrX 50056466 50056701 -112543229 + MIR SINE MIR 5 250 -12 194 214 43 71 chrX 50057545 50057615 -112542315 + MIR SINE MIR 30 97 -111 201 318 36 45 chrX 50057965 50058075 -112541855 + L2 LINE L2 3160 3268 -4 232 235 39 0 chrX 50059361 50059412 -112540518 + L2 LINE L2 3202 3254 -18 186 43 0 0 chrX 50063128 50063151 -112536779 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 229 196 0 0 chrX 50063155 50063201 -112536729 + LTR66 LTR ERVL 394 439 -171 * 231 167 0 0 chrX 50063173 50063215 -112536715 - LTR66 LTR ERVL -171 439 398 198 103 0 0 chrX 50063215 50063244 -112536686 + (TA)n Simple_repeat Simple_repeat 1 29 0 432 186 59 0 chrX 50064039 50064141 -112535789 + MIR SINE MIR 123 230 -32 280 374 77 7 chrX 50064965 50065275 -112534655 - L1ME3A LINE L1 -240 5930 5599 421 319 145 15 chrX 50065761 50066099 -112533831 - L2 LINE L2 -555 2759 2378 201 138 0 0 chrX 50067305 50067334 -112532596 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 187 346 89 0 chrX 50067614 50067715 -112532215 - MIR SINE MIR -43 219 110 2915 3 0 0 chrX 50067738 50068049 -112531881 + AluYa5 SINE Alu 1 311 0 248 340 56 14 chrX 50068151 50068295 -112531635 - MIR SINE MIR -94 168 19 649 323 45 50 chrX 50068827 50069245 -112530685 - L2 LINE L2 -737 2577 2162 21 71 0 0 chrX 50069305 50069347 -112530583 + AT_rich Low_complexity Low_complexity 1 42 0 578 179 0 0 chrX 50069626 50069721 -112530209 - MLT1B LTR MaLR 0 390 296 189 275 0 0 chrX 50070062 50070102 -112529828 - MIR SINE MIR -5 257 218 * 331 373 78 43 chrX 50070101 50070447 -112529483 - L2 LINE L2 -1 3271 2914 433 298 85 29 chrX 50070538 50070925 -112529005 - L1ME LINE L1 -297 5824 5423 314 271 59 0 chrX 50071006 50071046 -112528884 - L1MA10 LINE L1 -41 6293 6254 3297 215 35 29 chrX 50071046 50072048 -112527882 - L1ME1 LINE L1 -76 6090 5078 2585 154 4 20 chrX 50072041 50072151 -112527779 - L1PB4 LINE L1 -1 6155 6046 * 6118 177 70 25 chrX 50072151 50072814 -112527116 - L1MA4 LINE L1 -261 6039 5407 2050 121 27 7 chrX 50072814 50073112 -112526818 - AluSq SINE Alu -9 304 1 6118 177 70 25 chrX 50073112 50073135 -112526795 - L1MA4 LINE L1 -893 5407 5386 198 0 0 0 chrX 50073135 50073157 -112526773 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6118 177 70 25 chrX 50073157 50074349 -112525581 - L1MA4 LINE L1 -914 5386 4072 2070 245 43 18 chrX 50074372 50075045 -112524885 - L1ME1 LINE L1 -2512 3634 2945 368 132 15 0 chrX 50075201 50075269 -112524661 - L1PB4 LINE L1 -1098 5048 4980 825 242 45 0 chrX 50075272 50075470 -112524460 - L1PA13 LINE L1 -4861 1926 1720 303 353 0 10 chrX 50075466 50075568 -112524362 - L1PA13 LINE L1 -5360 1427 1327 * 2084 304 38 36 chrX 50075633 50076389 -112523541 - L1PA13 LINE L1 -5923 864 104 1955 146 0 29 chrX 50076389 50076698 -112523232 - AluSx SINE Alu -12 300 1 2084 304 38 36 chrX 50076698 50076803 -112523127 - L1PA13 LINE L1 -6683 104 1 2719 233 33 38 chrX 50076813 50077780 -112522150 - L1M4 LINE L1 -2797 3847 2886 225 179 0 0 chrX 50078176 50078232 -112521698 - L1MA7 LINE L1 -1 6290 6235 4972 237 86 27 chrX 50078243 50080406 -112519524 - L1M4 LINE L1 -3746 2898 626 287 302 94 19 chrX 50080735 50080894 -112519036 - L1M4 LINE L1 -6297 245 75 5509 247 42 30 chrX 50080937 50083227 -112516703 - L1MEc LINE L1 -2259 4385 2115 * 9469 25 4 0 chrX 50083221 50084320 -112515610 - L1P LINE L1 -1318 4828 3726 6398 33 0 0 chrX 50084320 50085023 -112514907 + L1PA3 LINE L1 5451 6155 0 539 257 55 38 chrX 50085023 50085234 -112514696 - L1MEc LINE L1 -4666 1980 1763 520 205 17 0 chrX 50085237 50085354 -112514576 + L1M4c LINE L1 2305 2423 -3961 4242 259 53 42 chrX 50085355 50086363 -112513567 - L1MEc LINE L1 -4833 1709 718 2379 176 26 16 chrX 50086363 50086790 -112513140 + MSTB1 LTR MaLR 1 431 -1 4242 259 53 42 chrX 50086790 50087508 -112512422 - L1MEc LINE L1 -5824 718 9 2447 296 27 52 chrX 50091122 50092040 -112507890 + L1MDa LINE L1 16 885 -5655 9144 58 0 1 chrX 50092041 50093227 -112506703 - L1P LINE L1 -3175 2971 1787 3273 43 0 0 chrX 50093225 50093619 -112506311 + L1P LINE L1 3872 4265 -1881 * 1536 213 74 49 chrX 50093624 50093853 -112506077 + L1MD2 LINE L1 5914 6161 -198 339 25 0 0 chrX 50093853 50093893 -112506037 + (CA)n Simple_repeat Simple_repeat 1 40 0 1536 213 74 49 chrX 50093893 50094095 -112505835 + L1MD2 LINE L1 6161 6356 -3 849 213 59 29 chrX 50094191 50094430 -112505500 - MLT1B LTR MaLR -141 249 4 238 250 15 15 chrX 50094598 50094666 -112505264 - MER20B DNA MER1_type 0 783 716 1096 272 42 31 chrX 50094690 50095047 -112504883 + MLT1I LTR MaLR 41 401 -8 231 141 16 94 chrX 50095053 50095117 -112504813 - MER20B DNA MER1_type -61 722 664 1294 92 54 14 chrX 50096298 50096610 -112503320 + THE1C LTR MaLR 1 375 0 33048 21 0 0 chrX 50098489 50103177 -112496753 - L1HS LINE L1 0 6155 1468 2183 233 119 2 chrX 50103462 50104510 -112495420 + MER69B DNA AcHobo 1 1214 -12 236 309 0 0 chrX 50104606 50104661 -112495269 + (TG)n Simple_repeat Simple_repeat 2 56 0 29 0 0 0 chrX 50105011 50105040 -112494890 + AT_rich Low_complexity Low_complexity 1 29 0 1086 303 75 36 chrX 50105854 50106296 -112493634 + MLT1E LTR MaLR 1 459 -134 987 112 22 0 chrX 50106383 50106517 -112493413 + AluSq/x SINE Alu 1 137 -175 636 225 7 0 chrX 50106521 50106659 -112493271 + MLT1F LTR MaLR 404 542 0 4352 136 20 11 chrX 50106719 50107463 -112492467 - L1MA8 LINE L1 -3 6288 5538 463 322 105 0 chrX 50108750 50108921 -112491009 - MER5A DNA MER1_type 0 189 1 1389 287 65 43 chrX 50109406 50110297 -112489633 + L1MB5 LINE L1 18 1079 -5567 24149 174 15 23 chrX 50110305 50112714 -112487216 + L1PA10 LINE L1 10 2437 -4046 2211 112 0 0 chrX 50112714 50113028 -112486902 + AluSq SINE Alu 1 314 0 24149 174 15 23 chrX 50113028 50117130 -112482800 + L1PA10 LINE L1 2437 6474 -9 2853 236 36 47 chrX 50117157 50118546 -112481384 + L1MB5 LINE L1 1069 2535 -4111 * 5097 251 45 12 chrX 50118543 50120308 -112479622 + L1MB5 LINE L1 3238 5060 -1584 2402 138 102 9 chrX 50120308 50120771 -112479159 + L1MA8 LINE L1 5764 6269 -22 23 54 0 0 chrX 50120772 50120809 -112479121 + AT_rich Low_complexity Low_complexity 1 37 0 2898 205 28 44 chrX 50120809 50122146 -112477784 + L1MB5 LINE L1 5047 6371 -301 5756 116 17 6 chrX 50122146 50123623 -112476307 + L1PA15 LINE L1 4694 6162 -3 2898 205 28 44 chrX 50123623 50123704 -112476226 + L1MB5 LINE L1 6371 6452 -220 2643 204 52 38 chrX 50123735 50123814 -112476116 + L1PB4 LINE L1 783 859 -5444 1628 146 24 3 chrX 50123814 50124101 -112475829 - L1MA6 LINE L1 -9 6291 5999 2643 204 52 38 chrX 50124101 50124884 -112475046 + L1PB4 LINE L1 859 1787 -4516 * 5409 177 14 10 chrX 50124874 50126850 -112473080 + L1PB4 LINE L1 4398 6381 -11 2215 200 28 92 chrX 50126853 50127189 -112472741 + L1M4 LINE L1 2179 2535 -4976 716 109 0 0 chrX 50127189 50127290 -112472640 + HY3 scRNA scRNA 1 101 0 2215 200 28 92 chrX 50127290 50127792 -112472138 + L1M4 LINE L1 2535 2900 -4611 2162 116 20 0 chrX 50127792 50128085 -112471845 + AluSx SINE Alu 1 299 -13 2215 200 28 92 chrX 50128085 50128172 -112471758 + L1M4 LINE L1 2900 2991 -4520 1094 116 0 0 chrX 50128172 50128318 -112471612 + AluSq/x SINE Alu 1 146 -166 501 122 0 0 chrX 50128318 50128392 -112471538 + AluS SINE Alu 227 300 -9 2774 244 33 75 chrX 50128523 50129497 -112470433 + L1M4 LINE L1 3196 4085 -3480 1936 173 40 3 chrX 50129497 50129849 -112470081 + MLT1A1 LTR MaLR 1 365 0 2774 244 33 75 chrX 50129849 50130487 -112469443 + L1M4 LINE L1 4085 4748 -2817 7804 14 0 0 chrX 50130513 50131407 -112468523 - L1PA2 LINE L1 -8 6147 5254 5198 214 72 54 chrX 50131409 50133841 -112466089 + L1MA9 LINE L1 3559 5947 -601 2132 149 33 0 chrX 50133841 50134176 -112465754 + MER7A DNA MER2_type 1 344 -2 186 43 0 0 chrX 50134176 50134199 -112465731 + (TA)n Simple_repeat Simple_repeat 1 23 0 5198 214 72 54 chrX 50134199 50134684 -112465246 + L1MA9 LINE L1 5946 6524 -24 2468 210 9 11 chrX 50134693 50135264 -112464666 + L1MA10 LINE L1 5765 6334 0 997 265 11 4 chrX 50135274 50135553 -112464377 + L1M4 LINE L1 6208 6488 -1077 2136 105 3 7 chrX 50137425 50137721 -112462209 - AluSx SINE Alu -17 295 1 313 300 46 92 chrX 50138714 50138777 -112461153 - L1MC4a LINE L1 -504 5658 5594 2322 85 0 16 chrX 50138777 50139082 -112460848 - AluSq SINE Alu -13 300 1 313 300 46 92 chrX 50139082 50139489 -112460441 - L1MC4a LINE L1 -568 5594 5435 25 0 0 0 chrX 50139591 50139616 -112460314 + AT_rich Low_complexity Low_complexity 1 25 0 534 282 147 23 chrX 50139621 50139947 -112459983 - L1ME3A LINE L1 -222 5948 5585 416 214 36 46 chrX 50139928 50140147 -112459783 - L1M1 LINE L1 -691 5479 5263 * 1778 138 47 4 chrX 50140345 50140621 -112459309 + AluJb SINE Alu 1 288 -24 21 0 0 0 chrX 50140621 50140642 -112459288 + AT_rich Low_complexity Low_complexity 1 21 0 305 231 167 0 chrX 50140674 50140752 -112459178 - L2 LINE L2 -2 3311 3221 231 100 0 0 chrX 50140772 50140812 -112459118 - Alu SINE Alu -7 301 262 2261 95 0 26 chrX 50140816 50141122 -112458808 - AluSx SINE Alu -14 298 1 204 282 145 16 chrX 50141123 50141247 -112458683 - L2 LINE L2 -90 3223 3084 281 357 20 7 chrX 50141299 50141596 -112458334 - L1M4 LINE L1 -1380 4766 4466 279 308 40 18 chrX 50141673 50141827 -112458103 - L1MEd LINE L1 -3127 3088 2926 2059 77 0 4 chrX 50141827 50142088 -112457842 + AluSq SINE Alu 39 298 -15 279 308 40 18 chrX 50142088 50142160 -112457770 - L1MEd LINE L1 -3289 2926 2857 420 261 91 25 chrX 50142307 50142506 -112457424 - L1M4 LINE L1 -1303 4843 4632 346 307 151 0 chrX 50142576 50142742 -112457188 - L1MEd LINE L1 -3616 2599 2409 1862 164 3 3 chrX 50142921 50143214 -112456716 - AluJb SINE Alu -19 293 1 267 246 85 39 chrX 50143642 50143772 -112456158 - HAL1 LINE L1 -860 1647 1512 731 245 45 20 chrX 50143851 50144096 -112455834 + L1ME2 LINE L1 5910 6160 -4 262 279 45 45 chrX 50144777 50144956 -112454974 - L1MEd LINE L1 -4876 1329 1151 26787 127 18 13 chrX 50144973 50151388 -112448542 - L1PA8 LINE L1 -7 6480 11 515 269 79 53 chrX 50151402 50151768 -112448162 - L1MEd LINE L1 -5053 1152 802 32 0 0 0 chrX 50152143 50152175 -112447755 + AT_rich Low_complexity Low_complexity 1 32 0 301 231 39 0 chrX 50153128 50153206 -112446724 - MIR SINE MIR -63 199 119 251 71 24 0 chrX 50154108 50154150 -112445780 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2255 117 3 0 chrX 50154351 50154658 -112445272 - AluSc SINE Alu -1 308 1 399 35 0 85 chrX 50154975 50155054 -112444876 - MLT2A2 LTR ERVL 0 453 386 206 140 0 20 chrX 50155054 50155104 -112444826 + (TA)n Simple_repeat Simple_repeat 1 49 0 319 200 11 63 chrX 50155110 50155205 -112444725 + L1MC4 LINE L1 6614 6703 -1339 450 178 0 32 chrX 50155212 50155397 -112444533 + (TA)n Simple_repeat Simple_repeat 1 179 0 249 253 0 11 chrX 50155412 50155503 -112444427 + L1MC4 LINE L1 6614 6703 -1339 454 212 4 18 chrX 50155511 50156332 -112443598 + (TA)n Simple_repeat Simple_repeat 1 809 0 10908 35 0 0 chrX 50156338 50157717 -112442213 - L1P LINE L1 -1492 4654 3276 559 169 9 36 chrX 50157723 50158631 -112441299 + (TA)n Simple_repeat Simple_repeat 1 883 0 350 151 11 43 chrX 50158644 50158830 -112441100 + (TA)n Simple_repeat Simple_repeat 1 180 0 1064 101 13 0 chrX 50158852 50159011 -112440919 + HERVL LTR ERVL 4862 5022 -632 424 119 17 45 chrX 50159030 50159207 -112440723 + (TA)n Simple_repeat Simple_repeat 1 172 0 2766 91 10 5 chrX 50159207 50159603 -112440327 - MLT2A1 LTR ERVL -46 398 1 28594 69 9 1 chrX 50159603 50163398 -112436532 - HERVL-A1 LTR ERVL 0 5654 1831 38098 64 25 2 chrX 50163550 50169538 -112430392 - L1PA3 LINE L1 -27 6128 2 10599 131 12 91 chrX 50169539 50171781 -112428149 - L1P LINE L1 -4071 2075 11 730 137 0 0 chrX 50171787 50171911 -112428019 - L1P LINE L1 -2660 3486 3363 * 19020 91 4 2 chrX 50171909 50175319 -112424611 + L1PA7 LINE L1 2490 5907 -247 32180 89 8 12 chrX 50175450 50178520 -112421410 - L1P LINE L1 -757 5389 2346 188 0 74 0 chrX 50178520 50178547 -112421383 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 32180 89 8 12 chrX 50178547 50180379 -112419551 - L1P LINE L1 -3800 2346 508 7730 112 40 4 chrX 50180536 50181808 -112418122 - MER41-int LTR ERV1 -315 5631 4314 28928 118 9 57 chrX 50181816 50188160 -112411770 + L1PA7 LINE L1 12 6037 -117 15779 66 19 2 chrX 50189995 50192824 -112407106 - L1PA6 LINE L1 -2 6152 3276 559 168 10 35 chrX 50192830 50193651 -112406279 + (TA)n Simple_repeat Simple_repeat 1 800 0 21 0 0 0 chrX 50194789 50194810 -112405120 + AT_rich Low_complexity Low_complexity 1 21 0 31068 52 3 1 chrX 50195518 50200184 -112399746 + L1PA4 LINE L1 1483 6155 0 224 277 0 0 chrX 50200320 50200367 -112399563 + polypurine Low_complexity Low_complexity 2 48 0 12331 88 2 1 chrX 50200685 50203072 -112396858 + L1PA7 LINE L1 3759 6152 -2 2529 193 25 4 chrX 50203072 50203586 -112396344 + L1 LINE L1 3844 4368 -1778 3669 203 18 9 chrX 50203596 50204388 -112395542 - L1P LINE L1 -1052 5094 4296 2186 112 35 11 chrX 50204445 50204904 -112395026 + L1P4 LINE L1 5129 5598 -567 9966 59 6 3 chrX 50204916 50206931 -112392999 + L1PA3 LINE L1 4073 6089 -66 794 162 185 6 chrX 50207032 50207205 -112392725 - MSTA LTR MaLR -224 204 1 201 74 0 0 chrX 50207212 50207239 -112392691 + (TG)n Simple_repeat Simple_repeat 2 28 0 636 259 92 6 chrX 50208510 50208684 -112391246 + MIR SINE MIR 7 195 -67 356 288 0 42 chrX 50209332 50209450 -112390480 + MIR SINE MIR 101 213 -49 518 207 36 21 chrX 50211703 50211843 -112388087 + L1MCa LINE L1 134 275 -6151 3666 89 16 2 chrX 50211843 50212336 -112387594 + MER41A LTR ERV1 1 500 -54 5734 127 44 22 chrX 50212411 50214720 -112385210 + MER41A-int LTR ERV1 1 2943 -2072 881 237 60 5 chrX 50215920 50216135 -112383795 + MIR SINE MIR 9 235 -27 325 238 25 12 chrX 50216143 50216223 -112383707 + L2 LINE L2 3190 3270 -2 451 242 26 25 chrX 50216381 50216510 -112383420 - MIR SINE MIR -62 146 38 528 348 72 65 chrX 50216670 50217087 -112382843 - L2 LINE L2 -2 3270 2851 25 0 0 0 chrX 50217828 50217853 -112382077 + AT_rich Low_complexity Low_complexity 1 25 0 248 339 9 26 chrX 50218105 50218220 -112381710 + L1M3c LINE L1 3 115 -6026 1789 148 7 0 chrX 50218968 50219239 -112380691 - L1PB3 LINE L1 0 6154 5882 9113 214 30 20 chrX 50219240 50219954 -112379976 - L1PBb LINE L1 -1937 5271 4565 2531 63 0 0 chrX 50219954 50220257 -112379673 - AluY SINE Alu -8 303 1 9113 214 30 20 chrX 50220257 50222906 -112377024 - L1PBb LINE L1 -2643 4565 1686 478 88 150 0 chrX 50222908 50222988 -112376942 + L1PBb LINE L1 648 739 -5465 3634 262 23 14 chrX 50222990 50224268 -112375662 - L1M2b LINE L1 -5220 1989 2 300 303 59 20 chrX 50224280 50224432 -112375498 - L1PA15-16 LINE L1 -5419 1443 1286 * 2479 318 42 34 chrX 50224400 50225809 -112374121 - L1PA15-16 LINE L1 -5441 1422 3 9059 105 13 12 chrX 50226007 50226035 -112373895 - HSMAR1 DNA Mariner -2 1285 1259 2404 54 0 7 chrX 50226035 50226330 -112373600 + AluY SINE Alu 2 294 -17 9059 105 13 12 chrX 50226330 50227564 -112372366 - HSMAR1 DNA Mariner -28 1259 22 234 125 42 42 chrX 50227586 50227634 -112372296 - MLT2D LTR ERVL 0 397 350 1145 188 16 0 chrX 50227693 50227885 -112372045 - MLT2D LTR ERVL -219 195 1 27987 172 66 47 chrX 50227890 50228922 -112371008 - ERVL-D-D LTR ERVL -12 5752 4741 378 248 54 47 chrX 50228922 50229051 -112370879 + AluJo SINE Alu 3 132 -170 27987 172 66 47 chrX 50229051 50230101 -112369829 - ERVL-D-D LTR ERVL -1023 4741 3713 2056 117 27 24 chrX 50230101 50230399 -112369531 + AluSx SINE Alu 1 299 -13 27987 172 66 47 chrX 50230399 50233800 -112366130 - ERVL-D-D LTR ERVL -2051 3713 33 5641 77 19 59 chrX 50233817 50234900 -112365030 + SVA Other Other 1 866 -520 668 65 14 43 chrX 50234914 50235052 -112364878 + SVA Other Other 661 794 -592 7027 59 6 49 chrX 50235065 50236062 -112363868 + SVA Other Other 433 1386 0 2099 168 36 48 chrX 50236111 50236176 -112363754 - MLT2D LTR ERVL -7 457 393 339 25 0 0 chrX 50236176 50236216 -112363714 + (TG)n Simple_repeat Simple_repeat 2 41 0 2099 168 36 48 chrX 50236216 50236609 -112363321 - MLT2D LTR ERVL -71 393 1 215 243 0 14 chrX 50236654 50236724 -112363206 + (TA)n Simple_repeat Simple_repeat 1 69 0 2380 68 3 3 chrX 50239757 50240049 -112359881 + AluSp SINE Alu 1 292 -21 317 339 43 21 chrX 50241629 50241815 -112358115 - L2 LINE L2 -2595 719 530 1053 128 6 18 chrX 50242799 50242963 -112356967 + AluJo SINE Alu 134 295 -17 617 172 0 0 chrX 50243422 50243538 -112356392 + L1MB3 LINE L1 6068 6183 0 1148 133 21 16 chrX 50246285 50246473 -112353457 - MER5A DNA MER1_type 0 189 1 674 295 79 4 chrX 50246835 50247062 -112352868 - MIR SINE MIR -14 248 5 211 369 31 39 chrX 50247278 50247408 -112352522 + L3b LINE CR1 1344 1472 -111 604 280 63 5 chrX 50247572 50247761 -112352169 - L2 LINE L2 -5 3308 3109 2042 179 32 46 chrX 50247781 50248285 -112351645 + MLT1D LTR MaLR 4 500 -5 1672 211 9 70 chrX 50248306 50248751 -112351179 - MLT2B1 LTR ERVL -97 423 6 1180 246 33 45 chrX 50248759 50249217 -112350713 - L2 LINE L2 -245 3068 2621 1978 195 22 76 chrX 50249218 50249760 -112350170 + MLT2B3 LTR ERVL 1 403 -50 295 175 0 0 chrX 50249842 50249899 -112350031 + MLT2B3 LTR ERVL 464 520 0 1174 225 132 59 chrX 50249900 50250340 -112349590 - L2 LINE L2 -691 2623 2152 21 0 0 0 chrX 50250345 50250366 -112349564 + AT_rich Low_complexity Low_complexity 1 21 0 1608 153 19 101 chrX 50250442 50250820 -112349110 + MER7A DNA MER2_type 1 345 -1 470 281 22 14 chrX 50250928 50251067 -112348863 - MIR SINE MIR 0 262 123 357 341 40 29 chrX 50251143 50251316 -112348614 - MIR SINE MIR -54 208 34 659 113 9 52 chrX 50251358 50251473 -112348457 + MER3 DNA MER1_type 1 110 -99 1245 19 0 6 chrX 50251473 50251631 -112348299 - L1PA3 LINE L1 -61 6094 5938 454 31 15 0 chrX 50251631 50251695 -112348235 + L1PA2 LINE L1 6090 6155 0 445 170 57 9 chrX 50251736 50251842 -112348088 + MER3 DNA MER1_type 99 209 0 265 208 0 0 chrX 50251800 50251853 -112348077 - MER3 DNA MER1_type -120 89 37 * 333 318 122 25 chrX 50251930 50252175 -112347755 + L1 LINE L1 3539 3807 -2339 48 0 0 0 chrX 50252203 50252251 -112347679 + AT_rich Low_complexity Low_complexity 1 48 0 1350 218 33 45 chrX 50252417 50252912 -112347018 + MLT1E LTR MaLR 47 593 0 352 294 81 60 chrX 50253153 50253401 -112346529 + L1ME LINE L1 5549 5801 -320 1047 255 145 42 chrX 50253421 50253770 -112346160 - MLT1J LTR MaLR -9 502 94 2169 128 3 0 chrX 50253770 50254075 -112345855 - AluSx SINE Alu -6 306 1 1047 255 145 42 chrX 50254075 50254180 -112345750 - MLT1J LTR MaLR -417 94 1 644 280 6 11 chrX 50254734 50254916 -112345014 + L2 LINE L2 1812 1992 -1322 36494 79 11 8 chrX 50254916 50261043 -112338887 - L1PA6 LINE L1 0 6154 10 211 272 120 0 chrX 50261043 50261135 -112338795 + L2 LINE L2 1984 2086 -1228 268 279 108 32 chrX 50261187 50261345 -112338585 + L2 LINE L2 2203 2372 -942 499 260 23 51 chrX 50261647 50261824 -112338106 + L2 LINE L2 3126 3297 -16 1675 120 175 71 chrX 50262692 50263058 -112336872 - MER4A LTR ERV1 0 664 261 427 154 77 0 chrX 50263058 50263149 -112336781 - MER4A LTR ERV1 -566 98 1 211 372 0 27 chrX 50263289 50263408 -112336522 + MIR SINE MIR 35 148 -83 624 230 62 17 chrX 50264030 50264208 -112335722 - MIR SINE MIR -71 191 6 694 243 132 0 chrX 50264232 50264421 -112335509 + MIR SINE MIR 13 226 -36 2116 115 0 0 chrX 50264737 50265050 -112334880 - L1PA13 LINE L1 -1 6162 5850 404 268 14 22 chrX 50265072 50265210 -112334720 - L1ME LINE L1 -420 5701 5565 4034 157 6 1 chrX 50265304 50266617 -112333313 + L1PB1 LINE L1 4475 5791 -360 665 120 3 53 chrX 50266617 50266999 -112332931 + (TA)n Simple_repeat Simple_repeat 1 362 0 285 58 92 23 chrX 50267052 50267139 -112332791 + (CATAT)n Simple_repeat Simple_repeat 3 95 0 2343 128 8 3 chrX 50267139 50267507 -112332423 + L1PB1 LINE L1 5781 6150 -1 614 222 40 0 chrX 50267509 50267685 -112332245 + Charlie2 DNA MER1_type 2644 2826 -36 782 223 36 0 chrX 50267687 50267853 -112332077 - MER5B DNA MER1_type -1 177 6 25 31 0 0 chrX 50268288 50268320 -112331610 + AT_rich Low_complexity Low_complexity 1 32 0 250 128 0 0 chrX 50268718 50268757 -112331173 - L1MB5 LINE L1 -252 5922 5884 545 286 64 25 chrX 50268992 50269195 -112330735 - MIR SINE MIR -18 244 34 378 297 88 20 chrX 50270039 50270187 -112329743 - MIR SINE MIR 0 262 105 1932 196 39 61 chrX 50270187 50270748 -112329182 - MLT2B3 LTR ERVL -5 549 1 250 319 14 14 chrX 50270772 50270841 -112329089 - MIR SINE MIR -180 82 14 1917 13 0 0 chrX 50270923 50271153 -112328777 - L1PA3 LINE L1 -1075 5071 4842 7601 22 7 0 chrX 50271153 50272223 -112327707 + L1PA3 LINE L1 5071 6152 -3 1246 314 73 13 chrX 50272240 50272718 -112327212 + L2 LINE L2 2805 3311 -2 370 342 61 52 chrX 50272727 50272958 -112326972 - L2 LINE L2 -13 3259 3027 645 237 111 21 chrX 50273583 50273773 -112326157 + MIR SINE MIR 53 259 -3 25 31 0 0 chrX 50274207 50274239 -112325691 + AT_rich Low_complexity Low_complexity 1 32 0 288 0 0 0 chrX 50274369 50274401 -112325529 + (TG)n Simple_repeat Simple_repeat 1 32 0 382 135 0 27 chrX 50274401 50274475 -112325455 - LTR7 LTR ERV1 -46 404 333 759 116 70 8 chrX 50274614 50274743 -112325187 - LTR7 LTR ERV1 -313 137 1 3555 100 11 12 chrX 50274743 50275301 -112324629 - HERVH LTR ERV1 0 7713 7157 1548 142 0 0 chrX 50275294 50275555 -112324375 - HERVH LTR ERV1 -1697 6016 5756 * 3831 147 6 16 chrX 50275545 50276817 -112323113 - HERVH LTR ERV1 -1925 4729 3357 12041 130 36 23 chrX 50276817 50279293 -112320637 - HERVH LTR ERV1 -4883 2830 1 693 93 0 19 chrX 50279293 50279400 -112320530 - LTR7 LTR ERV1 0 450 346 567 224 168 52 chrX 50279657 50279889 -112320041 - MIR SINE MIR -2 260 2 2169 125 3 3 chrX 50280782 50281087 -112318843 - AluSx SINE Alu -7 305 1 222 254 0 42 chrX 50281123 50281194 -112318736 + L2 LINE L2 2929 2996 -276 500 303 78 28 chrX 50281201 50281597 -112318333 - L1ME LINE L1 -452 5669 5254 394 314 60 42 chrX 50281609 50281892 -112318038 - L1ME LINE L1 -905 5241 4954 1543 124 11 11 chrX 50282018 50282284 -112317646 + L1MA8 LINE L1 5897 6162 -129 7909 125 53 26 chrX 50282348 50283792 -112316138 - Tigger3(Golem) DNA MER2_type 0 3029 1547 6620 172 39 18 chrX 50283810 50283922 -112316008 + L1PB4 LINE L1 3734 3842 -2314 957 120 0 0 chrX 50283922 50284055 -112315875 + FLAM_C SINE Alu 1 133 0 6620 172 39 18 chrX 50284055 50284126 -112315804 + L1PB4 LINE L1 3842 3910 -2246 1901 152 0 3 chrX 50284126 50284422 -112315508 + AluJb SINE Alu 3 297 -15 6620 172 39 18 chrX 50284422 50286618 -112313312 + L1PB4 LINE L1 3910 6149 -7 359 314 8 17 chrX 50286682 50286800 -112313130 + MIR SINE MIR 13 129 -133 2336 83 13 10 chrX 50286853 50287165 -112312765 + AluSq SINE Alu 1 313 0 325 272 82 14 chrX 50287176 50287323 -112312607 - MER112 DNA MER1_type -103 157 1 492 250 37 43 chrX 50288062 50288226 -112311704 - MIR SINE MIR -65 197 35 320 254 142 15 chrX 50288262 50288396 -112311534 + MIR SINE MIR 72 222 -40 2262 157 46 10 chrX 50288523 50288936 -112310994 + MSTA LTR MaLR 1 428 0 814 231 95 13 chrX 50289394 50289622 -112310308 - MIR SINE MIR -1 261 16 301 313 10 21 chrX 50289862 50289958 -112309972 + L2 LINE L2 3146 3240 -32 378 61 45 0 chrX 50290011 50290077 -112309853 + GA-rich Low_complexity Low_complexity 2 70 0 608 312 15 10 chrX 50290663 50290862 -112309068 + MIR SINE MIR 61 260 -2 236 241 152 0 chrX 50291376 50291455 -112308475 - MIR SINE MIR -1 261 171 613 238 67 36 chrX 50291485 50291708 -112308222 + L1MC5 LINE L1 7697 7926 -35 593 289 96 8 chrX 50291780 50292035 -112307895 + L2 LINE L2 2736 3009 -304 42715 60 8 0 chrX 50292069 50298177 -112301753 - L1PA4 LINE L1 0 6155 1 619 306 78 17 chrX 50298178 50298472 -112301458 + L2 LINE L2 2994 3305 -8 7413 173 106 26 chrX 50299222 50300756 -112299174 + MER52A LTR ERV1 1 1755 0 308 274 52 15 chrX 50301032 50301173 -112298757 + MIR SINE MIR 32 177 -72 365 322 75 14 chrX 50301229 50301375 -112298555 + L2 LINE L2 3102 3256 -16 4432 218 33 6 chrX 50302496 50303548 -112296382 - L1 LINE L1 -981 5165 4085 4282 162 41 32 chrX 50303548 50304430 -112295500 + L1PB3 LINE L1 3156 4045 -2101 * 7612 123 58 45 chrX 50304426 50304718 -112295212 - L1PBa LINE L1 -5504 1359 1072 234 143 0 0 chrX 50304718 50304753 -112295177 - LTR9 LTR ERV1 -58 554 520 7612 123 58 45 chrX 50304753 50305604 -112294326 - L1PBa LINE L1 -5791 1072 160 4729 115 8 3 chrX 50305604 50306213 -112293717 - LTR9 LTR ERV1 0 612 1 7612 123 58 45 chrX 50306213 50306373 -112293557 - L1PBa LINE L1 -6703 160 4 11106 228 27 15 chrX 50306384 50306545 -112293385 - L1P LINE L1 -749 5397 5239 2858 112 44 5 chrX 50306545 50306957 -112292973 - MSTA LTR MaLR 0 428 1 11106 228 27 15 chrX 50306957 50309574 -112290356 - L1P LINE L1 -907 5239 2585 6671 154 13 5 chrX 50309587 50311382 -112288548 - L1MA2 LINE L1 0 6304 4496 4710 167 34 32 chrX 50311379 50312454 -112287476 + L1PB3 LINE L1 5078 6154 0 * 42031 66 2 1 chrX 50313086 50319233 -112280697 + L1PA4 LINE L1 3 6155 0 224 277 0 0 chrX 50319369 50319416 -112280514 + polypurine Low_complexity Low_complexity 2 48 0 6216 45 1 0 chrX 50320209 50320915 -112279015 + L1PA3 LINE L1 5449 6155 0 9407 201 26 9 chrX 50321082 50321207 -112278723 - L1PA13 LINE L1 -4 6875 6754 3903 197 24 51 chrX 50321207 50322203 -112277727 - LTR5 LTR ERVK 0 969 1 9407 201 26 9 chrX 50322203 50324786 -112275144 - L1PA13 LINE L1 -125 6754 4140 5540 142 65 11 chrX 50324786 50326645 -112273285 - L1PA13 LINE L1 -4754 2109 1 * 5733 279 36 36 chrX 50326632 50329295 -112270635 - L1PA12 LINE L1 -4938 2643 244 9024 105 88 4 chrX 50329652 50331611 -112268319 + L1PA8 LINE L1 4124 6164 -8 23 0 0 0 chrX 50331620 50331643 -112268287 + AT_rich Low_complexity Low_complexity 1 23 0 43778 49 3 3 chrX 50331752 50337912 -112262018 - L1PA3 LINE L1 0 6155 2 396 0 0 0 chrX 50338567 50338611 -112261319 + (CA)n Simple_repeat Simple_repeat 2 45 0 27 81 0 0 chrX 50339198 50339260 -112260670 + AT_rich Low_complexity Low_complexity 1 62 0 210 232 29 72 chrX 50339419 50339488 -112260442 - MIR SINE MIR -61 147 82 22 35 0 0 chrX 50339729 50339758 -112260172 + AT_rich Low_complexity Low_complexity 1 29 0 6441 213 12 19 chrX 50339942 50339992 -112259938 - L1P LINE L1 -1223 4923 4874 6303 111 24 5 chrX 50339992 50341162 -112258768 - L1PA15 LINE L1 -6 6159 4987 6441 213 12 19 chrX 50341162 50343245 -112256685 - L1P LINE L1 -1272 4874 2788 22 35 0 0 chrX 50343550 50343579 -112256351 + AT_rich Low_complexity Low_complexity 1 29 0 306 349 0 0 chrX 50343595 50343704 -112256226 + (CACCAT)n Simple_repeat Simple_repeat 1 109 0 2501 112 0 3 chrX 50343989 50344345 -112255585 - THE1A LTR MaLR 0 355 1 1412 43 5 0 chrX 50344345 50344529 -112255401 - THE1A-int LTR MaLR 0 1580 1396 * 6130 107 10 9 chrX 50344517 50345440 -112254490 - THE1A-int LTR MaLR -656 924 1 2751 77 6 0 chrX 50345440 50345793 -112254137 - THE1A LTR MaLR 0 355 1 1660 194 20 20 chrX 50346187 50346590 -112253340 - MER65A LTR ERV1 0 445 43 229 88 0 0 chrX 50346624 50346658 -112253272 - MER65A LTR ERV1 -406 39 6 186 43 0 0 chrX 50347355 50347378 -112252552 + (A)n Simple_repeat Simple_repeat 1 23 0 271 258 112 11 chrX 50347403 50347492 -112252438 - L2 LINE L2 -2 3311 3214 335 374 37 11 chrX 50347641 50347828 -112252102 - L2 LINE L2 -193 3079 2888 825 255 53 0 chrX 50348032 50348279 -112251651 + MIR SINE MIR 2 261 -1 314 316 65 39 chrX 50348304 50348535 -112251395 - L2 LINE L2 -721 2593 2357 527 284 156 18 chrX 50348921 50349139 -112250791 + MIR SINE MIR 15 262 0 250 245 204 10 chrX 50349367 50349465 -112250465 + L2 LINE L2 3197 3313 0 7060 176 21 14 chrX 50349506 50350949 -112248981 + L1PA13 LINE L1 3858 5298 -865 2215 84 17 17 chrX 50350949 50351245 -112248685 + AluSg SINE Alu 1 296 -14 7060 176 21 14 chrX 50351245 50352114 -112247816 + L1PA13 LINE L1 5298 6160 -3 2680 120 20 29 chrX 50352165 50352499 -112247431 - MER4E LTR ERV1 0 779 444 4565 31 9 2 chrX 50352499 50353053 -112246877 - LTR6B LTR ERV1 0 558 1 2680 120 20 29 chrX 50353053 50353327 -112246603 - MER4E LTR ERV1 -335 444 1 937 237 11 0 chrX 50353557 50353743 -112246187 + MER5A DNA MER1_type 2 189 0 2417 93 29 44 chrX 50354048 50354211 -112245719 - MER4A LTR ERV1 0 664 500 2710 83 95 2 chrX 50354211 50354621 -112245309 + LTR7 LTR ERV1 1 448 -2 2417 93 29 44 chrX 50354621 50354867 -112245063 - MER4A LTR ERV1 -164 500 261 574 112 10 10 chrX 50354867 50354965 -112244965 - MER4A LTR ERV1 -566 98 1 5479 235 48 18 chrX 50355159 50356648 -112243282 + L1M3de LINE L1 2011 3454 -4111 180 0 0 0 chrX 50356648 50356668 -112243262 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5479 235 48 18 chrX 50356668 50357703 -112242227 + L1M3de LINE L1 3454 4456 -3109 2039 119 4 0 chrX 50357703 50357981 -112241949 - AluSg SINE Alu -19 291 13 5479 235 48 18 chrX 50357981 50358943 -112240987 + L1M3de LINE L1 4456 5595 -1970 11115 151 40 9 chrX 50358943 50361394 -112238536 - Tigger2 DNA MER2_type -124 2594 1 2563 206 39 69 chrX 50361395 50361474 -112238456 - L1 LINE L1 -3810 3755 3675 2072 155 119 13 chrX 50361474 50361861 -112238069 + MSTA LTR MaLR 1 428 0 2094 112 0 24 chrX 50361866 50362184 -112237746 - AluSc SINE Alu 0 309 1 2563 206 39 69 chrX 50362184 50363115 -112236815 - L1 LINE L1 -3894 3671 2771 1707 174 11 0 chrX 50363115 50363390 -112236540 - AluJo SINE Alu -30 282 5 2563 206 39 69 chrX 50363390 50363440 -112236490 - L1 LINE L1 -4794 2771 2721 937 199 22 9 chrX 50363441 50363667 -112236263 - L1 LINE L1 -4992 2497 2269 251 286 0 0 chrX 50363697 50363760 -112236170 - L1 LINE L1 -5525 1964 1902 1506 252 72 45 chrX 50363854 50364370 -112235560 - L1 LINE L1 -6494 995 466 406 179 26 0 chrX 50364387 50364465 -112235465 - L1MD2 LINE L1 -213 6146 6067 20849 178 19 21 chrX 50364474 50366308 -112233622 + L1PA14 LINE L1 829 2665 -4934 216 0 0 0 chrX 50366308 50366332 -112233598 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 20849 178 19 21 chrX 50366332 50370446 -112229484 + L1PA14 LINE L1 2665 7594 -5 1124 258 69 27 chrX 50370447 50371009 -112228921 - L1MDb LINE L1 -2309 4097 3512 212 57 0 29 chrX 50371015 50371050 -112228880 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 5203 28 29 0 chrX 50371050 50371699 -112228231 - L1PA3 LINE L1 -24 6131 5464 20387 43 3 0 chrX 50371701 50375017 -112224913 - L1PA5 LINE L1 -6 6148 2823 7228 126 2 0 chrX 50375021 50376135 -112223795 - L1P LINE L1 -5030 1116 1 4269 230 68 30 chrX 50376151 50377050 -112222880 - L1MDb LINE L1 -2898 3508 2645 1785 202 34 32 chrX 50377050 50377516 -112222414 - MLT1C LTR MaLR 0 467 1 4269 230 68 30 chrX 50377516 50378263 -112221667 - L1MDb LINE L1 -3761 2645 1928 2086 129 129 21 chrX 50378263 50378649 -112221281 - MSTA LTR MaLR 0 428 1 4269 230 68 30 chrX 50378649 50379316 -112220614 - L1MDb LINE L1 -4478 1928 1288 2051 123 0 36 chrX 50379316 50379625 -112220305 - AluSq SINE Alu -15 298 1 4269 230 68 30 chrX 50379625 50380107 -112219823 - L1MDb LINE L1 -5118 1288 588 234 0 0 0 chrX 50380125 50380151 -112219779 + (CCA)n Simple_repeat Simple_repeat 1 26 0 443 196 20 0 chrX 50380235 50380337 -112219593 - L1MDb LINE L1 -5374 1035 932 1566 271 59 22 chrX 50380446 50380956 -112218974 - L1MDb LINE L1 -5872 537 9 2096 122 13 0 chrX 50431074 50431377 -112168553 + AluSp SINE Alu 1 307 -6 683 114 45 0 chrX 50431377 50431509 -112168421 + GA-rich Low_complexity Low_complexity 1 138 0 1292 274 29 23 chrX 50431511 50431990 -112167940 + L1P LINE L1 1969 2450 -3696 6182 245 25 53 chrX 50434412 50435146 -112164784 + L1 LINE L1 2438 3191 -2955 1635 188 0 4 chrX 50435146 50435417 -112164513 + AluJb SINE Alu 14 283 -29 6182 245 25 53 chrX 50435417 50436776 -112163154 + L1 LINE L1 3191 4473 -1673 13814 173 29 17 chrX 50436780 50439411 -112160519 + L1MA3 LINE L1 1189 3788 -3936 2425 121 22 6 chrX 50439411 50439767 -112160163 + THE1B LTR MaLR 3 364 0 13814 173 29 17 chrX 50439767 50443589 -112156341 + L1MA3 LINE L1 3788 7719 -5 4639 159 45 5 chrX 50443592 50445249 -112154681 + L1PA15 LINE L1 4459 6162 -3 499 329 14 7 chrX 50445542 50445682 -112154248 - L2 LINE L2 0 3272 3132 1238 161 11 19 chrX 50445682 50445942 -112153988 - L1 LINE L1 -1519 4627 4370 481 290 131 42 chrX 50445943 50446278 -112153652 - L2 LINE L2 -134 3179 2815 21 82 0 0 chrX 50446297 50446346 -112153584 + AT_rich Low_complexity Low_complexity 1 49 0 643 195 69 0 chrX 50446452 50446611 -112153319 - MER58 DNA MER1_type -2224 196 27 2229 146 77 15 chrX 50446701 50446736 -112153194 - L1MA9 LINE L1 -13 7259 7228 2416 77 3 0 chrX 50446736 50447033 -112152897 + AluSp SINE Alu 1 298 -15 2229 146 77 15 chrX 50447033 50447478 -112152452 - L1MA9 LINE L1 -44 7228 6749 180 0 0 0 chrX 50447478 50447498 -112152432 + (CA)n Simple_repeat Simple_repeat 2 21 0 3073 167 39 9 chrX 50447510 50448199 -112151731 - L1MA9 LINE L1 -1457 5649 4940 357 209 163 0 chrX 50448195 50448367 -112151563 - L1MA9 LINE L1 -2711 4395 4196 * 721 189 11 49 chrX 50448369 50448554 -112151376 - L1MA9 LINE L1 -6846 184 7 548 276 35 11 chrX 50448591 50448765 -112151165 - L2 LINE L2 -531 2783 2606 233 171 105 40 chrX 50449397 50449473 -112150457 - L1ME1 LINE L1 0 6166 6086 292 254 42 0 chrX 50449605 50449676 -112150254 - L3 LINE CR1 -180 1397 1324 1360 216 11 0 chrX 50450021 50450285 -112149645 + Tigger7 DNA MER2_type 1 267 -466 572 177 0 0 chrX 50450292 50450388 -112149542 + Tigger7 DNA MER2_type 2392 2487 0 624 354 84 35 chrX 50450402 50450831 -112149099 - L2 LINE L2 -488 2826 2377 190 231 215 0 chrX 50451166 50451231 -112148699 - MIR SINE MIR -6 256 178 2247 100 0 7 chrX 50451820 50452119 -112147811 + AluSx SINE Alu 1 297 -15 378 352 39 11 chrX 50452729 50452908 -112147022 + L2 LINE L2 2522 2705 -609 557 328 92 18 chrX 50452913 50453142 -112146788 + MIR SINE MIR 1 246 -16 591 149 50 7 chrX 50453547 50453688 -112146242 + L1MA10 LINE L1 6187 6333 -1 1895 195 3 0 chrX 50453975 50454345 -112145585 - L1PB3 LINE L1 -2 6152 5782 263 112 34 45 chrX 50454354 50454443 -112145487 + (TA)n Simple_repeat Simple_repeat 2 89 0 8645 153 9 13 chrX 50454463 50456850 -112143080 - L1PA11 LINE L1 0 6174 3778 493 270 0 0 chrX 50456860 50456975 -112142955 - L1PA12 LINE L1 -7460 121 7 342 145 58 0 chrX 50456969 50456996 -112142934 - L1PB3 LINE L1 -779 5375 5349 * 1699 162 31 33 chrX 50456996 50457039 -112142891 - L1PA15 LINE L1 -216 5952 5910 856 202 6 6 chrX 50457039 50457212 -112142718 - L1PA15 LINE L1 -6 6159 5987 1699 162 31 33 chrX 50457212 50457529 -112142401 - L1PA15 LINE L1 -258 5910 5303 20627 40 2 0 chrX 50457546 50460875 -112139055 - L1PA4 LINE L1 -1 6154 2823 7566 94 4 5 chrX 50460879 50461991 -112137939 - L1PA4 LINE L1 -5030 1116 7 11774 249 31 20 chrX 50461996 50464256 -112135674 - L1P4 LINE L1 -556 6260 4025 2178 117 0 0 chrX 50464256 50464555 -112135375 - AluY SINE Alu -12 299 1 11774 249 31 20 chrX 50464555 50468054 -112131876 - L1P4 LINE L1 -2791 4025 1 7194 227 20 18 chrX 50468067 50468115 -112131815 - L1PA15 LINE L1 -844 5302 5256 8464 46 8 0 chrX 50468115 50469076 -112130854 - LTR5 LTR ERVK 0 969 1 7194 227 20 18 chrX 50469076 50471175 -112128755 - L1PA15 LINE L1 -890 5256 3156 393 290 43 79 chrX 50471217 50471520 -112128410 - LTR67 LTR ERVL 0 557 266 758 325 103 21 chrX 50471681 50472214 -112127716 + L2 LINE L2 1465 2041 -1273 316 363 13 32 chrX 50472214 50472371 -112127559 + L2 LINE L2 2664 2817 -497 566 336 134 36 chrX 50472447 50472755 -112127175 + L2 LINE L2 2824 3191 -122 384 22 0 0 chrX 50472755 50472800 -112127130 + (TG)n Simple_repeat Simple_repeat 2 46 0 566 336 134 36 chrX 50472800 50472937 -112126993 + L2 LINE L2 3191 3313 0 262 261 43 14 chrX 50472939 50473008 -112126922 + L2 LINE L2 3243 3313 0 248 389 30 15 chrX 50473201 50473332 -112126598 - L2 LINE L2 -356 2958 2826 1883 111 0 64 chrX 50473454 50473752 -112126178 + AluSx SINE Alu 1 279 -33 351 0 0 0 chrX 50473753 50473792 -112126138 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 428 241 19 28 chrX 50474529 50474637 -112125293 + MIR SINE MIR 156 262 0 1344 303 44 8 chrX 50474662 50475163 -112124767 - LTR33 LTR ERVL -2 519 1 1018 93 0 0 chrX 50475366 50475530 -112124400 - AluSg/x SINE Alu 0 318 155 525 347 126 18 chrX 50475541 50475939 -112123991 - L1PA13 LINE L1 -5314 1473 1033 3462 254 32 23 chrX 50475974 50476884 -112123046 - L1PA13 LINE L1 -5869 918 1 991 167 5 5 chrX 50476892 50477154 -112122776 - L1M1 LINE L1 -743 5403 5182 * 2527 230 119 36 chrX 50477143 50478034 -112121896 - L1M2b LINE L1 -5937 1272 13 861 234 60 47 chrX 50478039 50478175 -112121755 - Charlie4a DNA MER1_type -1505 456 323 865 62 108 0 chrX 50478175 50478304 -112121626 + L1PA11 LINE L1 6031 6173 -1 861 234 60 47 chrX 50478304 50478460 -112121470 - Charlie4a DNA MER1_type -1638 323 155 180 0 0 0 chrX 50478460 50478480 -112121450 + (TA)n Simple_repeat Simple_repeat 1 20 0 861 234 60 47 chrX 50478480 50478566 -112121364 - Charlie4a DNA MER1_type -1806 155 72 16736 193 67 25 chrX 50478566 50481179 -112118751 + L1PA11 LINE L1 1 2504 -3957 180 0 0 0 chrX 50481179 50481199 -112118731 + (CAA)n Simple_repeat Simple_repeat 2 21 0 16736 193 67 25 chrX 50481199 50483456 -112116474 + L1PA11 LINE L1 2504 5214 -1247 2569 111 10 10 chrX 50483455 50483853 -112116077 + THE1C-int LTR MaLR 1183 1580 0 * 2220 128 19 24 chrX 50483853 50484229 -112115701 + THE1C LTR MaLR 1 374 -1 5960 97 23 23 chrX 50484230 50485509 -112114421 + L1PA11 LINE L1 5210 6488 -1 247 235 73 0 chrX 50485509 50485577 -112114353 - Charlie4a DNA MER1_type -429 79 7 429 239 116 43 chrX 50485643 50485880 -112114050 - L1ME LINE L1 -585 5566 5309 180 258 0 76 chrX 50486023 50486089 -112113841 - L2 LINE L2 -643 2671 2611 192 179 0 0 chrX 50486305 50486344 -112113586 + (TG)n Simple_repeat Simple_repeat 2 40 0 460 282 175 29 chrX 50486445 50486651 -112113279 + MIR SINE MIR 22 257 -5 568 275 70 15 chrX 50486856 50487056 -112112874 - MIR SINE MIR 0 262 52 239 367 25 0 chrX 50487065 50487144 -112112786 - MIR SINE MIR -92 116 36 22 56 0 0 chrX 50487213 50487249 -112112681 + AT_rich Low_complexity Low_complexity 1 36 0 31 36 0 18 chrX 50488215 50488249 -112111681 + AT_rich Low_complexity Low_complexity 1 35 -20 2346 147 35 5 chrX 50488249 50488672 -112111258 - L1MA4 LINE L1 -6 6294 5859 31 36 0 18 chrX 50488672 50488693 -112111237 + AT_rich Low_complexity Low_complexity 35 55 0 213 232 54 18 chrX 50488927 50489039 -112110891 + (TA)n Simple_repeat Simple_repeat 2 117 0 378 119 15 0 chrX 50489042 50489109 -112110821 - MER116 DNA Mariner -4 76 9 206 332 24 87 chrX 50489263 50489471 -112110459 - L3b LINE CR1 -93 1490 1296 324 344 67 35 chrX 50490651 50490933 -112108997 - L2 LINE L2 -610 2704 2414 228 277 6 113 chrX 50491159 50491318 -112108612 + L2 LINE L2 2845 2986 -286 360 270 61 17 chrX 50491352 50491467 -112108463 - L1ME3A LINE L1 -10 6160 6041 1170 241 7 62 chrX 50491482 50491917 -112108013 - L1ME3A LINE L1 -203 5967 5557 1602 231 10 60 chrX 50492443 50492606 -112107324 + L1M4 LINE L1 8 178 -6364 2510 60 0 19 chrX 50492606 50492923 -112107007 + AluY SINE Alu 1 311 0 1602 231 10 60 chrX 50492923 50493262 -112106668 + L1M4 LINE L1 178 485 -6057 423 227 10 0 chrX 50493298 50493395 -112106535 + L1M4 LINE L1 486 583 -5959 252 219 9 48 chrX 50493403 50493508 -112106422 + L1M4 LINE L1 2287 2387 -4259 605 239 124 17 chrX 50493573 50493964 -112105966 + L1M4 LINE L1 2540 2986 -3658 561 246 28 17 chrX 50493957 50494136 -112105794 - L1M4 LINE L1 -6349 193 13 * 511 281 77 30 chrX 50494158 50494457 -112105473 - L1MC/D LINE L1 -1990 5818 5506 26 0 0 0 chrX 50494457 50494483 -112105447 + AT_rich Low_complexity Low_complexity 1 26 0 1724 132 8 8 chrX 50494542 50494800 -112105130 - AluSx SINE Alu -5 307 50 2768 122 52 23 chrX 50494801 50495277 -112104653 - LTR2B LTR ERV1 0 490 1 35938 192 11 7 chrX 50495289 50502059 -112097871 - HERVE LTR ERV1 -1017 6796 1 2916 104 32 56 chrX 50502059 50502561 -112097369 - LTR2B LTR ERV1 0 490 1 329 113 0 19 chrX 50502561 50502614 -112097316 - AluSx SINE Alu -250 52 1 2432 243 26 9 chrX 50502665 50503353 -112096577 - L1ME1 LINE L1 -1 6165 5466 423 189 81 0 chrX 50503359 50503470 -112096460 - L1MA7 LINE L1 -11 6280 6161 3692 184 37 16 chrX 50503471 50504839 -112095091 - L1MA7 LINE L1 -238 6053 4665 5449 212 104 49 chrX 50504862 50505086 -112094844 - L1MA5A LINE L1 0 6297 6087 2763 19 0 0 chrX 50505086 50505396 -112094534 - AluY SINE Alu -1 310 1 5449 212 104 49 chrX 50505396 50506442 -112093488 - L1MA5A LINE L1 -210 6087 5100 718 122 0 0 chrX 50506442 50506557 -112093373 - L1MA5A LINE L1 0 6297 6183 5449 212 104 49 chrX 50506557 50507983 -112091947 - L1MA5A LINE L1 -1197 5100 3428 3222 115 9 20 chrX 50508016 50508555 -112091375 - L1MA1 LINE L1 -1 6301 5769 18924 185 28 28 chrX 50508555 50511461 -112088469 - L1PA11 LINE L1 -9 6480 3574 1897 129 37 7 chrX 50511461 50511756 -112088174 - AluSq SINE Alu -9 304 1 18924 185 28 28 chrX 50511756 50512009 -112087921 - L1PA11 LINE L1 -2915 3574 3322 2072 123 4 0 chrX 50512009 50512328 -112087602 - AluSc SINE Alu 0 320 1 18924 185 28 28 chrX 50512328 50515208 -112084722 - L1PA11 LINE L1 -3167 3322 467 5150 223 52 10 chrX 50515238 50516688 -112083242 - L1 LINE L1 -984 5162 3652 4200 115 95 6 chrX 50516722 50517588 -112082342 - L1PBa LINE L1 -3974 2888 1898 39446 47 24 1 chrX 50517607 50523622 -112076308 - L1PA4 LINE L1 0 6155 1 8968 239 42 32 chrX 50523622 50524455 -112075475 - L1PA13 LINE L1 -2263 4534 3711 329 119 0 17 chrX 50524455 50524548 -112075382 - AluS SINE Alu 0 301 231 8968 239 42 32 chrX 50524548 50526777 -112073153 - L1PA13 LINE L1 -3086 3711 1348 3227 21 3 3 chrX 50526777 50527158 -112072772 + L1PA2 LINE L1 5774 6154 -1 8968 239 42 32 chrX 50527158 50528488 -112071442 - L1PA13 LINE L1 -5449 1348 33 1158 111 0 0 chrX 50528506 50528763 -112071167 + (TA)n Simple_repeat Simple_repeat 1 257 0 6444 79 2 2 chrX 50528781 50530478 -112069452 - L1PA7 LINE L1 -2 6467 4784 20411 117 22 22 chrX 50530481 50534375 -112065555 - L1PA7 LINE L1 -1848 4613 706 245 241 0 0 chrX 50534378 50534432 -112065498 - L1M2 LINE L1 -4197 2652 2599 317 234 0 43 chrX 50534432 50534526 -112065404 - L1MC4 LINE L1 -1339 6703 6614 * 328 284 23 0 chrX 50534514 50534602 -112065328 + L1MC4 LINE L1 6614 6703 -1339 * 336 240 0 62 chrX 50534534 50534630 -112065300 - L1MC4 LINE L1 -1339 6703 6614 301 161 129 0 chrX 50534630 50534692 -112065238 - L1M2 LINE L1 -6377 472 403 11010 228 61 4 chrX 50534693 50537623 -112062307 - L1 LINE L1 -3707 3141 43 301 184 0 0 chrX 50537617 50537666 -112062264 + L1M2 LINE L1 4 52 -6797 * 357 133 17 0 chrX 50537666 50537726 -112062204 - L1 LINE L1 -6787 62 2 279 343 42 17 chrX 50537897 50538186 -112061744 + L1PA12 LINE L1 8 303 -7278 4561 63 5 8 chrX 50540291 50540890 -112059040 + L1PA8 LINE L1 5576 6172 0 2295 125 14 3 chrX 50540892 50541253 -112058677 + L1PA8A LINE L1 5766 6130 -1 21 0 0 0 chrX 50541868 50541889 -112058041 + AT_rich Low_complexity Low_complexity 1 21 0 928 323 46 58 chrX 50541993 50542813 -112057117 - MER110-int LTR ERV1 -1685 2962 2153 3261 214 31 45 chrX 50543144 50543444 -112056486 - L1MB4 LINE L1 -3 6413 6110 2593 33 0 3 chrX 50543444 50543743 -112056187 - AluY SINE Alu -13 298 1 3261 214 31 45 chrX 50543743 50544205 -112055725 - L1MB4 LINE L1 -306 6110 5643 1992 128 3 7 chrX 50544205 50544503 -112055427 - AluSq SINE Alu -15 298 2 3261 214 31 45 chrX 50544503 50545414 -112054516 - L1MB4 LINE L1 -773 5643 4770 847 110 0 0 chrX 50545414 50545541 -112054389 - L1MA2 LINE L1 0 6304 6178 3261 214 31 45 chrX 50545541 50545818 -112054112 - L1MB4 LINE L1 -1646 4770 4491 3517 114 19 5 chrX 50545831 50546399 -112053531 - L1MA2 LINE L1 0 6304 5729 1579 47 0 0 chrX 50546414 50546606 -112053324 - L1PA3 LINE L1 -150 6005 5814 * 35279 45 2 1 chrX 50546600 50551803 -112048127 - L1PA3 LINE L1 0 6155 950 3264 281 48 13 chrX 50551827 50553206 -112046724 - L1MB4 LINE L1 -1880 4502 3076 1677 240 48 9 chrX 50553229 50553670 -112046260 - L1MB4 LINE L1 -4733 1651 1194 2045 170 3 15 chrX 50554077 50554418 -112045512 + MER1B DNA MER1_type 1 337 0 1383 210 15 15 chrX 50554561 50554833 -112045097 + AluJb SINE Alu 7 278 -34 245 50 0 25 chrX 50554834 50554874 -112045056 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1914 233 87 23 chrX 50555665 50556146 -112043784 - MLT2B1 LTR ERVL 0 520 9 1196 243 16 0 chrX 50556443 50556698 -112043232 - MER90 LTR ERV1 -9 566 308 219 36 0 0 chrX 50557145 50557173 -112042757 + (TAG)n Simple_repeat Simple_repeat 1 28 0 181 234 0 94 chrX 50557641 50557688 -112042242 - L2 LINE L2 -2 3311 3270 2655 140 17 0 chrX 50557688 50558109 -112041821 + MSTA LTR MaLR 1 428 0 181 234 0 94 chrX 50558109 50558125 -112041805 - L2 LINE L2 -43 3270 3254 2907 242 43 8 chrX 50559940 50560656 -112039274 + L1MCa LINE L1 158 898 -5666 1137 223 34 10 chrX 50560663 50560959 -112038971 + L1MCa LINE L1 780 1082 -4963 805 124 33 7 chrX 50560954 50561107 -112038823 - L1M1 LINE L1 -827 5476 5320 * 4390 179 60 21 chrX 50561114 50561532 -112038398 - L1PB4 LINE L1 -5 6151 5751 2128 133 16 37 chrX 50561532 50561915 -112038015 + THE1C LTR MaLR 1 375 0 4390 179 60 21 chrX 50561915 50561957 -112037973 - L1PB4 LINE L1 -405 5751 5712 2084 133 7 0 chrX 50561957 50562251 -112037679 - AluSx SINE Alu -16 296 1 4390 179 60 21 chrX 50562251 50563206 -112036724 - L1PB4 LINE L1 -444 5712 4677 4295 236 107 18 chrX 50563204 50564362 -112035568 + L1MCa LINE L1 1062 2115 -4449 * 411 21 0 0 chrX 50564362 50564410 -112035520 + (TG)n Simple_repeat Simple_repeat 1 48 0 4295 236 107 18 chrX 50564410 50565318 -112034612 + L1MCa LINE L1 2115 3316 -3248 5292 176 43 3 chrX 50565324 50566902 -112033028 + L1PB4 LINE L1 4503 6149 -7 801 236 111 16 chrX 50566889 50567266 -112032664 + L1MCa LINE L1 3302 3714 -2850 * 21 36 0 0 chrX 50567267 50567295 -112032635 + AT_rich Low_complexity Low_complexity 1 28 0 866 257 4 8 chrX 50567457 50567702 -112032228 + L1MCa LINE L1 4105 4348 -2216 272 216 0 0 chrX 50567716 50567767 -112032163 + FRAM/FAM SINE Alu 26 76 -90 813 199 84 0 chrX 50567790 50567956 -112031974 - AluJb SINE Alu -3 309 130 198 0 0 0 chrX 50567970 50567992 -112031938 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1764 38 5 0 chrX 50567992 50568204 -112031726 - L1PA3 LINE L1 -18 6137 5925 723 226 88 11 chrX 50568208 50568389 -112031541 + L1MCa LINE L1 4359 4553 -2011 2030 177 44 25 chrX 50568392 50568799 -112031131 + MSTB1 LTR MaLR 18 432 0 2823 185 15 15 chrX 50568846 50569436 -112030494 + L1M3 LINE L1 3797 4386 -1760 257 139 0 0 chrX 50569438 50569474 -112030456 + L1M3 LINE L1 5609 5644 -690 10320 156 24 14 chrX 50569477 50571294 -112028636 + Tigger1 DNA MER2_type 2 1835 -583 550 153 15 23 chrX 50571295 50571426 -112028504 - L1MB8 LINE L1 0 6178 6049 * 5001 159 9 13 chrX 50571422 50573186 -112026744 - L1PA16 LINE L1 -6 6160 4379 1431 65 0 0 chrX 50573208 50573393 -112026537 - L1PA5 LINE L1 0 6154 5970 528 170 128 0 chrX 50573393 50573487 -112026443 - MER21B LTR ERV1 -547 316 211 33359 96 10 10 chrX 50573487 50578311 -112021619 - L1P LINE L1 -1313 4833 11 4336 236 55 45 chrX 50578322 50579571 -112020359 - L1M4 LINE L1 -1651 4993 3758 1721 203 7 0 chrX 50579571 50579867 -112020063 + AluJb SINE Alu 1 298 -14 4336 236 55 45 chrX 50579867 50580240 -112019690 - L1M4 LINE L1 -2886 3758 3390 3401 62 20 0 chrX 50580240 50580689 -112019241 - L1PA10 LINE L1 -4 6164 5707 4336 236 55 45 chrX 50580689 50581852 -112018078 - L1M4 LINE L1 -3254 3390 2240 7016 58 2 2 chrX 50581852 50582944 -112016986 + L1PA7 LINE L1 5058 6149 -5 4336 236 55 45 chrX 50582944 50583387 -112016543 - L1M4 LINE L1 -4404 2240 1803 2014 119 53 0 chrX 50583387 50583672 -112016258 + AluSx SINE Alu 1 300 -12 4336 236 55 45 chrX 50583672 50584009 -112015921 - L1M4 LINE L1 -4841 1803 842 198 0 0 0 chrX 50584011 50584033 -112015897 + (T)n Simple_repeat Simple_repeat 1 22 0 225 204 0 0 chrX 50584046 50584090 -112015840 + A-rich Low_complexity Low_complexity 1 44 0 336 146 0 101 chrX 50584165 50584254 -112015676 - L1P LINE L1 -3449 2697 2618 * 1664 267 39 12 chrX 50584251 50584768 -112015162 - L1P3 LINE L1 -4861 1014 484 302 301 75 64 chrX 50584813 50584986 -112014944 + MIR3 SINE MIR 34 208 0 204 346 66 37 chrX 50585305 50585441 -112014489 + MIR3 SINE MIR 16 155 -53 237 33 0 0 chrX 50585558 50585588 -112014342 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 703 204 0 0 chrX 50585589 50585702 -112014228 + FLAM_A SINE Alu 1 113 -29 21 36 0 0 chrX 50585733 50585761 -112014169 + AT_rich Low_complexity Low_complexity 1 28 0 799 283 11 2 chrX 50586175 50586403 -112013527 - MIR SINE MIR 0 262 34 1235 120 70 33 chrX 50587022 50587091 -112012839 - L1MA9 LINE L1 -5 6307 6242 297 0 0 0 chrX 50587091 50587124 -112012806 + (TA)n Simple_repeat Simple_repeat 1 33 0 1235 120 70 33 chrX 50587124 50587295 -112012635 - L1MA9 LINE L1 -70 6242 6058 696 185 0 48 chrX 50587450 50587596 -112012334 + FLAM_C SINE Alu 1 139 -4 286 226 16 16 chrX 50587757 50587819 -112012111 - L2 LINE L2 -4 3268 3207 434 249 195 78 chrX 50588233 50588276 -112011654 + MIR SINE MIR 34 71 -191 1651 162 87 29 chrX 50588276 50588621 -112011309 - MLT1A1 LTR MaLR 0 365 1 434 249 195 78 chrX 50588621 50588782 -112011148 + MIR SINE MIR 71 262 0 233 331 71 18 chrX 50588907 50589060 -112010870 - MIR SINE MIR -15 247 83 2172 102 7 0 chrX 50589872 50590156 -112009774 - AluSg SINE Alu -24 286 1 2540 62 0 0 chrX 50591361 50591667 -112008263 + AluY SINE Alu 1 306 -5 210 205 0 0 chrX 50592349 50592388 -112007542 + L2 LINE L2 3267 3305 -8 362 291 29 10 chrX 50592739 50592842 -112007088 + MIR SINE MIR 38 142 -120 23 0 0 0 chrX 50593032 50593055 -112006875 + AT_rich Low_complexity Low_complexity 1 23 0 887 135 0 0 chrX 50593219 50593345 -112006585 - AluJb SINE Alu -186 126 1 587 21 63 11 chrX 50593692 50593787 -112006143 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 351 165 372 8 chrX 50594282 50594403 -112005527 - MIR SINE MIR 0 262 98 219 286 61 10 chrX 50594423 50594521 -112005409 + MIR SINE MIR 160 262 0 629 282 34 15 chrX 50594618 50594824 -112005106 + L2 LINE L2 3104 3313 0 424 311 0 0 chrX 50594815 50594921 -112005009 - MIR SINE MIR -156 106 1 * 484 271 57 26 chrX 50596240 50596432 -112003498 + MIR SINE MIR 65 262 0 1590 282 102 24 chrX 50596617 50597197 -112002733 + L2 LINE L2 2377 3060 -253 2447 96 3 0 chrX 50597197 50597509 -112002421 - AluSq SINE Alu 0 313 1 1590 282 102 24 chrX 50597509 50597731 -112002199 + L2 LINE L2 3060 3263 -50 1705 172 27 20 chrX 50597843 50598139 -112001791 + AluJb SINE Alu 1 298 -14 397 126 184 0 chrX 50598160 50598247 -112001683 + L1MA9 LINE L1 6209 6311 -1 13294 162 62 19 chrX 50599606 50606180 -111993750 + L1PA3 LINE L1 3 6881 0 9117 190 43 18 chrX 50606188 50606414 -111993516 + L1PA15 LINE L1 2849 3068 -3097 8518 33 3 0 chrX 50606414 50608222 -111991708 + L1PA3 LINE L1 4348 6155 0 9117 190 43 18 chrX 50608222 50611233 -111988697 + L1PA15 LINE L1 3068 6165 0 189 0 0 0 chrX 50611254 50611275 -111988655 + (A)n Simple_repeat Simple_repeat 1 21 0 301 276 53 26 chrX 50611275 50611427 -111988503 - L1ME LINE L1 -555 5566 5411 1595 175 62 10 chrX 50611432 50611723 -111988207 - AluSx SINE Alu -6 306 1 22 35 0 0 chrX 50611900 50611929 -111988001 + AT_rich Low_complexity Low_complexity 1 29 0 321 286 70 29 chrX 50611929 50612100 -111987830 - L1ME LINE L1 -1234 4912 4735 196 374 33 11 chrX 50612442 50612533 -111987397 + L2 LINE L2 2925 3017 -255 3360 286 75 15 chrX 50612641 50614010 -111985920 + L2 LINE L2 1850 3313 0 279 200 0 0 chrX 50614284 50614334 -111985596 + L2 LINE L2 3262 3311 -2 285 316 64 41 chrX 50614342 50614513 -111985417 + L3 LINE CR1 787 961 -616 2809 176 41 40 chrX 50614513 50614924 -111985006 + L1MB5 LINE L1 4869 5278 -896 2302 86 0 16 chrX 50614924 50615237 -111984693 + AluSg SINE Alu 1 308 -2 2176 106 0 0 chrX 50615245 50615549 -111984381 - AluSx SINE Alu 0 304 1 2809 176 41 40 chrX 50615549 50616140 -111983790 + L1MB5 LINE L1 5284 5874 -300 542 68 0 0 chrX 50616140 50616213 -111983717 + L1PA5 LINE L1 6078 6151 -3 6838 69 8 1 chrX 50616225 50617182 -111982748 + L1PA7 LINE L1 5192 6154 0 216 0 0 0 chrX 50617912 50617936 -111981994 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1260 214 3 41 chrX 50617941 50618154 -111981776 + L1MB5 LINE L1 5861 6060 -114 2144 129 3 0 chrX 50618154 50618448 -111981482 + AluSx SINE Alu 2 296 -16 1260 214 3 41 chrX 50618448 50618552 -111981378 + L1MB5 LINE L1 6060 6166 -8 2289 120 28 11 chrX 50619005 50619363 -111980567 - THE1B LTR MaLR 0 364 1 309 321 37 30 chrX 50619488 50619622 -111980308 - L2 LINE L2 -627 2687 2553 232 295 90 26 chrX 50619678 50619805 -111980125 - L2 LINE L2 -1009 2305 2165 1638 126 4 0 chrX 50619805 50620052 -111979878 + L1PA16 LINE L1 5910 6157 -9 232 295 90 26 chrX 50620052 50620080 -111979850 - L2 LINE L2 -1149 2165 2140 351 219 31 21 chrX 50620155 50620251 -111979679 + Charlie8 DNA MER1_type 85 181 -2236 188 289 118 26 chrX 50620889 50620965 -111978965 + L2 LINE L2 3197 3279 -34 411 271 52 0 chrX 50621211 50621307 -111978623 - MLT1F1 LTR MaLR -164 403 303 1473 308 43 66 chrX 50621397 50622352 -111977578 - L2 LINE L2 -229 3043 2107 365 340 29 30 chrX 50622426 50622605 -111977325 - L1 LINE L1 -3286 2860 2676 217 338 117 7 chrX 50623239 50623384 -111976546 - MIR SINE MIR -27 235 75 817 198 17 25 chrX 50623413 50623650 -111976280 - Charlie1a DNA MER1_type 0 1455 1221 759 224 45 0 chrX 50623668 50623824 -111976106 + FRAM SINE Alu 1 160 -16 742 205 0 0 chrX 50623824 50623980 -111975950 - Charlie1a DNA MER1_type -250 1205 1050 435 70 0 0 chrX 50623981 50624038 -111975892 - L1PA5 LINE L1 -2021 4125 4069 10087 35 0 0 chrX 50624038 50626071 -111973859 + L1PA5 LINE L1 4142 6151 -3 242 245 71 10 chrX 50626085 50626112 -111973818 - Charlie1a DNA MER1_type -1700 1061 1037 2609 150 32 26 chrX 50626112 50626618 -111973312 - L1PA16 LINE L1 -2 6164 5656 242 245 71 10 chrX 50626618 50626688 -111973242 - Charlie1a DNA MER1_type -1724 1037 958 2449 82 0 0 chrX 50626704 50627035 -111972895 - L1PA13 LINE L1 -19 6144 5814 2397 76 21 0 chrX 50627035 50627357 -111972573 - L1PA4 LINE L1 0 6155 5821 3713 67 0 2 chrX 50627371 50627851 -111972079 + L1PA5 LINE L1 5673 6151 -3 28167 59 1 1 chrX 50627865 50633374 -111966556 - L1PA4 LINE L1 -520 5635 1 3372 161 11 8 chrX 50633373 50634559 -111965371 - L1PA13 LINE L1 -336 5832 4643 * 247 384 43 85 chrX 50634654 50634912 -111965018 - L2 LINE L2 -6 3266 3020 288 220 22 22 chrX 50634947 50635038 -111964892 - MER112 DNA MER1_type -85 175 85 198 239 45 34 chrX 50635070 50635158 -111964772 - L3 LINE CR1 -734 843 755 264 130 0 0 chrX 50635159 50635205 -111964725 + (T)n Simple_repeat Simple_repeat 1 46 0 3232 16 0 0 chrX 50635208 50635594 -111964336 - L1HS LINE L1 0 6155 5770 350 0 0 0 chrX 50635590 50635632 -111964298 + L1P2 LINE L1 5711 5752 -402 * 434 222 10 0 chrX 50635627 50635726 -111964204 - L1P LINE L1 -1489 4657 4558 368 194 0 0 chrX 50635736 50635803 -111964127 + L1PA12 LINE L1 967 1033 -6548 3027 230 99 23 chrX 50635803 50636043 -111963887 - Charlie1a DNA MER1_type -1783 978 758 1563 202 28 0 chrX 50636043 50636330 -111963600 + AluJo SINE Alu 3 297 -15 3027 230 99 23 chrX 50636330 50636997 -111962933 - Charlie1a DNA MER1_type -2003 758 2 2016 136 7 23 chrX 50637575 50637885 -111962045 - AluSx SINE Alu -7 305 1 189 236 36 18 chrX 50638130 50638185 -111961745 - MIR SINE MIR -11 251 196 1597 192 159 0 chrX 50638631 50638959 -111960971 + L1 LINE L1 4245 4672 -1474 2984 51 3 0 chrX 50638959 50639329 -111960601 - L1PA5 LINE L1 -4 6150 5780 1597 192 159 0 chrX 50639329 50639473 -111960457 + L1 LINE L1 4672 4792 -1354 11687 164 102 7 chrX 50639481 50641836 -111958094 + L1MA3 LINE L1 778 3355 -4210 5851 58 1 0 chrX 50641836 50642571 -111957359 - L1PA5 LINE L1 -6 6148 5413 31339 64 5 1 chrX 50642571 50648666 -111951264 - L1PA4 LINE L1 -4 6151 41 34973 102 10 3 chrX 50648667 50654060 -111945870 - L1PA5 LINE L1 -727 5427 2 1310 153 51 0 chrX 50654062 50654337 -111945593 + L1MA3 LINE L1 3347 3635 -3930 40811 51 2 2 chrX 50654337 50660487 -111939443 + L1PA3 LINE L1 1 6152 -3 11612 200 21 13 chrX 50660503 50664529 -111935401 + L1MA3 LINE L1 3619 7674 -50 34306 103 9 9 chrX 50664543 50670693 -111929237 + L1PA6 LINE L1 2 6147 -7 40 49 0 0 chrX 50670795 50670856 -111929074 + AT_rich Low_complexity Low_complexity 1 61 0 4511 195 42 21 chrX 50670856 50672230 -111927700 + L1MA10 LINE L1 4908 6319 -15 200 98 0 24 chrX 50672707 50672748 -111927182 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6742 161 11 6 chrX 50672748 50675167 -111924763 - L1MA1 LINE L1 -5 7716 5286 6670 216 26 9 chrX 50675885 50676321 -111923609 - L1MA1 LINE L1 -2259 5306 4879 2463 107 28 6 chrX 50676321 50676677 -111923253 - THE1B LTR MaLR 0 364 1 10390 115 17 35 chrX 50676679 50678285 -111921645 - THE1B-int LTR MaLR -2 1578 1 2287 140 22 0 chrX 50678285 50678641 -111921289 - THE1B LTR MaLR 0 364 1 6670 216 26 9 chrX 50678641 50679933 -111919997 - L1MA1 LINE L1 -2685 4880 3544 911 152 66 0 chrX 50679936 50680087 -111919843 + AluSg/x SINE Alu 134 294 -18 12246 165 27 49 chrX 50680097 50683345 -111916585 - L1MA1 LINE L1 -4013 3552 15 240 256 67 56 chrX 50683601 50683691 -111916239 + MIR SINE MIR 5 95 -167 2353 106 6 3 chrX 50683721 50684079 -111915851 - AluSq SINE Alu 0 359 1 2119 198 86 42 chrX 50684155 50684796 -111915134 - LTR1B LTR ERV1 -157 669 1 900 198 4 79 chrX 50684855 50685108 -111914822 + MLT1B LTR MaLR 1 234 -156 507 146 22 0 chrX 50685109 50685198 -111914732 + MLT1B LTR MaLR 377 467 0 501 299 111 0 chrX 50685200 50685344 -111914586 - MIR SINE MIR -101 161 2 2375 112 0 0 chrX 50685997 50686341 -111913589 + AluSx SINE Alu 1 344 0 1381 329 48 28 chrX 50686341 50686827 -111913103 + L2 LINE L2 2275 2783 -489 1078 229 122 4 chrX 50686827 50686970 -111912960 - AluJo SINE Alu -9 293 168 396 0 0 0 chrX 50686970 50687014 -111912916 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1078 229 122 4 chrX 50687014 50687132 -111912798 - AluJo SINE Alu -134 168 1 1381 329 48 28 chrX 50687132 50687415 -111912515 + L2 LINE L2 2783 3059 -213 240 35 0 0 chrX 50687855 50687884 -111912046 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2159 107 0 21 chrX 50687886 50688175 -111911755 - AluSc SINE Alu -26 283 1 23 33 0 0 chrX 50689520 50689550 -111910380 + AT_rich Low_complexity Low_complexity 1 30 0 1274 112 11 0 chrX 50690146 50690324 -111909606 + AluSg/x SINE Alu 121 300 -12 222 144 10 196 chrX 50690393 50690490 -111909440 + MIR SINE MIR 133 211 -51 1026 178 0 0 chrX 50690715 50690884 -111909046 + MER5A DNA MER1_type 18 186 -3 2306 99 3 10 chrX 50690930 50691244 -111908686 - AluSx SINE Alu 0 312 1 7468 115 97 85 chrX 50691896 50693573 -111906357 - pTR5 LTR ERV1 0 2438 743 763 201 116 0 chrX 50693630 50693794 -111906136 + MIR SINE MIR 80 262 0 263 272 97 78 chrX 50693999 50694205 -111905725 - L2 LINE L2 -8 3305 3096 822 143 0 8 chrX 50694393 50694526 -111905404 - FLAM_C SINE Alu 0 133 2 237 268 24 49 chrX 50694600 50694682 -111905248 - L2 LINE L2 -649 2665 2586 324 274 62 0 chrX 50694790 50694903 -111905027 - L1ME4a LINE L1 -2 6119 6000 470 242 28 60 chrX 50695066 50695197 -111904733 - L1ME4a LINE L1 -193 5928 5807 1473 176 12 112 chrX 50695197 50695600 -111904330 - MLT1A1 LTR MaLR -2 363 1 470 242 28 60 chrX 50695600 50695716 -111904214 - L1ME4a LINE L1 -314 5807 5689 364 315 142 5 chrX 50695868 50696065 -111903865 + L3 LINE CR1 1148 1371 -206 * 1049 198 26 30 chrX 50696063 50696295 -111903635 - MIR SINE MIR 0 262 32 295 287 53 127 chrX 50696295 50696539 -111903391 - L2 LINE L2 -2 3270 3045 272 229 43 0 chrX 50696548 50696618 -111903312 + MER117 DNA MER1_type 88 160 -37 724 216 49 5 chrX 50696726 50696930 -111903000 + MER113 DNA MER1_type? 5 217 -304 187 286 0 0 chrX 50696986 50697035 -111902895 + L3 LINE CR1 1524 1572 -5 2187 99 24 0 chrX 50697807 50698099 -111901831 - AluSg SINE Alu -11 299 1 396 0 0 0 chrX 50698331 50698375 -111901555 + (CA)n Simple_repeat Simple_repeat 2 45 0 396 318 71 34 chrX 50698707 50698780 -111901150 - MIR SINE MIR 0 262 193 467 188 236 35 chrX 50698780 50698924 -111901006 - MER69A DNA AcHobo -4 173 1 396 318 71 34 chrX 50698924 50699089 -111900841 - MIR SINE MIR -69 193 15 230 222 0 0 chrX 50699648 50699693 -111900237 + GA-rich Low_complexity Low_complexity 3 47 0 256 296 49 0 chrX 50700257 50700338 -111899592 + L2 LINE L2 3188 3272 0 671 208 58 0 chrX 50701053 50701207 -111898723 + MIR SINE MIR 100 262 0 186 311 90 112 chrX 50701263 50701530 -111898400 - L2 LINE L2 -102 3170 2910 196 297 173 32 chrX 50701624 50701809 -111898121 - L2 LINE L2 -849 2465 2255 * 384 264 0 88 chrX 50701807 50701966 -111897964 + MIR SINE MIR 118 262 0 200 242 30 15 chrX 50701968 50702034 -111897896 + CT-rich Low_complexity Low_complexity 4 70 0 221 297 14 0 chrX 50702754 50702828 -111897102 + CT-rich Low_complexity Low_complexity 2 76 0 200 316 214 0 chrX 50704739 50704856 -111895074 + MIR SINE MIR 48 189 -73 2352 87 7 0 chrX 50705873 50706171 -111893759 - AluSp SINE Alu -13 300 1 22 35 0 0 chrX 50706347 50706376 -111893554 + AT_rich Low_complexity Low_complexity 1 29 0 580 196 52 26 chrX 50706697 50706850 -111893080 + MIR SINE MIR 60 216 -46 297 51 0 0 chrX 50707298 50707337 -111892593 + (TG)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chrX 50707419 50707441 -111892489 + (TA)n Simple_repeat Simple_repeat 2 23 0 279 211 126 0 chrX 50707449 50707544 -111892386 - Charlie8 DNA MER1_type -2261 156 50 463 142 55 102 chrX 50707567 50707694 -111892236 + MLT1B LTR MaLR 5 125 -265 21 57 0 0 chrX 50707694 50707729 -111892201 + AT_rich Low_complexity Low_complexity 1 35 0 279 270 27 9 chrX 50707738 50707849 -111892081 - MIR SINE MIR -1 261 149 282 29 0 0 chrX 50707856 50707891 -111892039 + (TG)n Simple_repeat Simple_repeat 2 36 0 484 270 30 44 chrX 50707896 50708157 -111891773 - L1MC4a LINE L1 -297 5824 5688 1253 219 42 70 chrX 50708162 50708563 -111891367 - MLT1B LTR MaLR 0 390 1 463 233 106 87 chrX 50708582 50708653 -111891277 + MER102b DNA MER1_type 61 129 -1299 2136 116 14 0 chrX 50708653 50708947 -111890983 + AluSq SINE Alu 1 298 -15 463 233 106 87 chrX 50708947 50709150 -111890780 + MER102b DNA MER1_type 129 340 -1 289 316 0 0 chrX 50709285 50709364 -111890566 - L2 LINE L2 -2 3270 3192 496 256 53 53 chrX 50709716 50709943 -111889987 - Charlie8 DNA MER1_type -2180 237 11 601 287 29 29 chrX 50711192 50711366 -111888564 + MIR SINE MIR 20 193 -69 477 107 27 0 chrX 50711389 50711464 -111888466 + L1PA10 LINE L1 6091 6167 -1 320 231 109 32 chrX 50711468 50711624 -111888306 + L1MC5 LINE L1 7741 7908 -53 1972 152 7 3 chrX 50711633 50711923 -111888007 - AluSx SINE Alu -21 291 1 227 366 0 50 chrX 50712097 50712198 -111887732 - MIR SINE MIR -81 127 32 300 315 89 4 chrX 50712363 50712509 -111887421 - MIR SINE MIR -55 207 39 402 208 48 64 chrX 50712922 50713047 -111886883 - MIR SINE MIR -56 206 84 2211 108 10 7 chrX 50713985 50714290 -111885640 - AluSg SINE Alu -4 306 1 661 174 19 193 chrX 50714547 50714669 -111885261 + MIR SINE MIR 39 90 -172 1594 160 91 0 chrX 50714669 50714944 -111884986 - AluJo SINE Alu -12 300 1 661 174 19 193 chrX 50714944 50715091 -111884839 + MIR SINE MIR 90 261 -1 30 0 0 0 chrX 50716403 50716433 -111883497 + AT_rich Low_complexity Low_complexity 1 30 0 758 281 28 14 chrX 50716871 50717088 -111882842 - MIR SINE MIR -29 233 14 255 283 66 71 chrX 50717112 50717324 -111882606 - L2 LINE L2 -729 2585 2375 214 217 100 17 chrX 50717420 50717480 -111882450 - MIR SINE MIR -1 261 197 4324 128 88 7 chrX 50717480 50718564 -111881366 - Tigger3(Golem) DNA MER2_type 0 3029 2033 1681 57 0 0 chrX 50718564 50718776 -111881154 + L1PA5 LINE L1 5941 6152 -2 4324 128 88 7 chrX 50718776 50718833 -111881097 - Tigger3(Golem) DNA MER2_type -996 2033 1 283 311 34 25 chrX 50718833 50718952 -111880978 - MIR SINE MIR -64 198 79 490 220 0 28 chrX 50719412 50719521 -111880409 - L2 LINE L2 -23 3290 3185 2120 151 72 3 chrX 50719582 50719959 -111879971 - MER57A LTR ERV1 0 403 1 244 314 0 12 chrX 50721063 50721110 -111878820 - MIR SINE MIR -57 205 158 1819 159 25 91 chrX 50721110 50721196 -111878734 - MLT2D LTR ERVL 0 414 324 180 0 0 0 chrX 50721196 50721216 -111878714 + (GA)n Simple_repeat Simple_repeat 1 20 0 1819 159 25 91 chrX 50721216 50721570 -111878360 - MLT2D LTR ERVL -90 324 3 244 314 0 12 chrX 50721570 50721608 -111878322 - MIR SINE MIR -104 158 121 2234 106 0 10 chrX 50721881 50722217 -111877713 - AluSg SINE Alu 0 310 1 6969 121 11 10 chrX 50722221 50722473 -111877457 - L1MA2 LINE L1 0 6304 6054 2144 115 0 7 chrX 50722473 50722769 -111877161 - AluSx SINE Alu -16 296 3 6969 121 11 10 chrX 50722769 50724207 -111875723 - L1MA2 LINE L1 -250 6054 4611 1647 166 0 25 chrX 50724207 50724490 -111875440 - AluSx SINE Alu -2 310 35 308 156 0 0 chrX 50724525 50724570 -111875360 - AluSx SINE Alu -252 47 3 311 154 0 0 chrX 50724572 50724637 -111875293 - L1MA2 LINE L1 -1527 4619 4555 1662 210 115 73 chrX 50724714 50725467 -111874463 - LTR1B LTR ERV1 -37 983 1 8000 169 28 69 chrX 50725467 50727162 -111872768 - L1MA2 LINE L1 -1585 4561 2963 2184 118 3 0 chrX 50727162 50727458 -111872472 - AluSp SINE Alu -15 298 2 8000 169 28 69 chrX 50727458 50727817 -111872113 - L1MA2 LINE L1 -3183 2963 2591 3696 127 14 0 chrX 50727822 50728387 -111871543 - L1PA16 LINE L1 -10 6156 5584 2184 87 0 11 chrX 50728725 50729031 -111870899 - AluY SINE Alu 0 303 1 245 232 49 0 chrX 50729687 50729769 -111870161 - L1MC4 LINE L1 -164 7878 7793 321 149 68 0 chrX 50730162 50730236 -111869694 + MER113 DNA MER1_type? 4 82 -439 189 0 0 0 chrX 50730252 50730273 -111869657 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1297 202 90 43 chrX 50730324 50730769 -111869161 - MLT1C LTR MaLR -1 466 1 21 0 0 0 chrX 50730813 50730834 -111869096 + AT_rich Low_complexity Low_complexity 1 21 0 202 250 0 0 chrX 50730953 50730997 -111868933 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chrX 50732212 50732235 -111867695 + AT_rich Low_complexity Low_complexity 1 23 0 262 152 0 0 chrX 50733110 50733180 -111866750 - AluSx SINE Alu 0 311 242 1538 111 0 0 chrX 50733181 50733379 -111866551 - AluSx SINE Alu -114 198 1 476 145 0 0 chrX 50733955 50734024 -111865906 - AluJ/FRAM SINE Alu -25 287 219 247 167 22 44 chrX 50734122 50734212 -111865718 - L1MC5 LINE L1 -261 7700 7613 46 120 0 0 chrX 50734677 50734968 -111864962 + AT_rich Low_complexity Low_complexity 1 291 0 330 339 16 8 chrX 50735085 50735206 -111864724 + L2 LINE L2 2960 3081 -191 23 68 0 0 chrX 50736457 50736501 -111863429 + AT_rich Low_complexity Low_complexity 1 44 0 187 282 81 96 chrX 50736764 50736973 -111862957 + L2 LINE L2 3107 3312 -1 23 0 0 0 chrX 50737017 50737040 -111862890 + AT_rich Low_complexity Low_complexity 1 23 0 210 296 0 0 chrX 50737203 50737257 -111862673 + L3 LINE CR1 1323 1376 -201 205 152 0 43 chrX 50737458 50737504 -111862426 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2733 71 14 0 chrX 50737684 50738034 -111861896 - THE1A LTR MaLR 0 355 1 229 244 47 58 chrX 50738034 50738120 -111861810 + Charlie7 DNA MER1_type 6 90 -2522 4332 159 15 18 chrX 50738133 50738975 -111860955 - L1MA8 LINE L1 -10 6281 5442 198 0 0 0 chrX 50739462 50739484 -111860446 + (CA)n Simple_repeat Simple_repeat 2 23 0 240 35 0 0 chrX 50739976 50740005 -111859925 + (TG)n Simple_repeat Simple_repeat 2 30 0 306 0 0 0 chrX 50740804 50740838 -111859092 + (CA)n Simple_repeat Simple_repeat 2 35 0 390 100 0 0 chrX 50740838 50740898 -111859032 + (GA)n Simple_repeat Simple_repeat 1 60 0 452 298 136 37 chrX 50741280 50741374 -111858556 - MER102b DNA MER1_type -1129 299 216 1306 171 78 84 chrX 50741374 50741719 -111858211 - MER2 DNA MER2_type -1 343 1 452 298 136 37 chrX 50741719 50741896 -111858034 - MER102b DNA MER1_type -1212 216 1 368 298 29 0 chrX 50742190 50742294 -111857636 + MIR3 SINE MIR 60 166 -42 2014 133 7 7 chrX 50742674 50742967 -111856963 - AluSx SINE Alu -19 293 1 549 234 22 122 chrX 50743185 50743407 -111856523 + L2 LINE L2 2651 2850 -464 185 382 40 0 chrX 50743405 50743481 -111856449 + L2 LINE L2 3005 3083 -230 * 23 33 0 0 chrX 50743537 50743567 -111856363 + AT_rich Low_complexity Low_complexity 1 30 0 2839 113 14 33 chrX 50743639 50744127 -111855803 - L1MA2 LINE L1 -7 6297 5819 3339 140 34 4 chrX 50744337 50745239 -111854691 - L1MA2 LINE L1 -506 5799 4875 526 201 90 0 chrX 50945316 50945450 -111654480 - MSTB LTR MaLR -1 431 286 614 238 31 44 chrX 50945456 50945616 -111654314 - MSTB LTR MaLR -265 161 4 1098 283 29 2 chrX 50945618 50946074 -111653856 - L1M4 LINE L1 -3117 3029 2562 * 3698 199 22 5 chrX 50946057 50946922 -111653008 - L1PA13 LINE L1 -3065 3732 2853 * 34778 102 6 6 chrX 50946920 50953067 -111646863 - L1PA6 LINE L1 0 6154 14 563 168 20 34 chrX 50953084 50953233 -111646697 - L1PA13 LINE L1 -3935 2862 2716 4429 166 19 0 chrX 50953237 50954056 -111645874 - L1P LINE L1 -1245 4901 4067 7323 44 0 0 chrX 50954057 50955530 -111644400 - L1PA3 LINE L1 0 6155 4683 35057 51 4 1 chrX 50955630 50961074 -111638856 + L1PA3 LINE L1 702 6155 0 2345 123 0 29 chrX 50961074 50961446 -111638484 + L1PA8A LINE L1 5769 6131 0 567 216 16 26 chrX 50961446 50961635 -111638295 + L1M4 LINE L1 4985 5171 -975 * 2303 158 9 15 chrX 50961624 50961692 -111638238 - L1PA13 LINE L1 -4199 2598 2531 6634 56 4 1 chrX 50961692 50962534 -111637396 + L1PA5 LINE L1 5308 6151 -3 2303 158 9 15 chrX 50962534 50963134 -111636796 - L1PA13 LINE L1 -4266 2531 1930 * 5040 197 10 16 chrX 50963132 50964140 -111635790 - L1PA13 LINE L1 -4674 2113 1112 1765 228 70 15 chrX 50964156 50964328 -111635602 - L1MDb LINE L1 -4888 1518 1357 2376 71 0 0 chrX 50964328 50964623 -111635307 - AluY SINE Alu -16 295 1 1765 228 70 15 chrX 50964623 50965130 -111634800 - L1MDb LINE L1 -5049 1357 812 2493 143 15 34 chrX 50965317 50965631 -111634299 + L1MA5 LINE L1 5833 6136 -164 1701 179 0 43 chrX 50965631 50965933 -111633997 + AluJo SINE Alu 12 300 -12 2493 143 15 34 chrX 50965933 50966095 -111633835 + L1MA5 LINE L1 6136 6300 0 2228 100 3 7 chrX 50966640 50966940 -111632990 - AluSx SINE Alu -13 299 1 992 65 0 0 chrX 50967014 50967138 -111632792 + AluY SINE Alu 180 303 -8 5076 52 2 2 chrX 50968324 50968957 -111630973 - L1PA4 LINE L1 -3 6152 5520 13992 49 2 0 chrX 50968957 50970790 -111629140 - L1P LINE L1 -1038 5108 3272 1788 53 0 0 chrX 50970791 50971036 -111628894 + L1P LINE L1 5107 5351 -795 * 3570 98 0 0 chrX 50971033 50971534 -111628396 - L1PA4 LINE L1 -5639 507 7 4868 49 3 0 chrX 50971542 50972177 -111627753 + L1PA3 LINE L1 5342 5978 -177 27 0 0 0 chrX 50972292 50972319 -111627611 + AT_rich Low_complexity Low_complexity 1 27 0 11888 45 2 1 chrX 50972321 50974018 -111625912 - L1P2 LINE L1 -625 5530 3832 * 38209 64 16 0 chrX 50974014 50980063 -111619867 - L1PA3 LINE L1 0 6155 7 36 0 0 0 chrX 50981338 50981374 -111618556 + AT_rich Low_complexity Low_complexity 1 36 0 28858 114 10 29 chrX 50981374 50985644 -111614286 - L1PA7 LINE L1 -7 6147 2020 326 22 0 0 chrX 50985644 50985689 -111614241 - L1PA2 LINE L1 0 6155 6111 28858 114 10 29 chrX 50985689 50987332 -111612598 - L1PA7 LINE L1 -4134 2020 348 2913 241 11 7 chrX 50987337 50988215 -111611715 - L1 LINE L1 -2091 4055 3171 180 0 0 0 chrX 50988215 50988235 -111611695 + (TG)n Simple_repeat Simple_repeat 1 20 0 2913 241 11 7 chrX 50988235 50988247 -111611683 - L1 LINE L1 -2975 3171 3161 * 7403 190 143 11 chrX 50988236 50990232 -111609698 - L1PBa LINE L1 -4597 2266 6 553 56 67 11 chrX 50990234 50990323 -111609607 - L1PBa LINE L1 -4437 2426 2333 2869 177 22 16 chrX 50990334 50991013 -111608917 - L1PBa LINE L1 -4936 1927 1101 3917 232 53 4 chrX 50991023 50992014 -111607916 - L1PBa LINE L1 -5816 1047 8 4475 219 19 69 chrX 50992033 50994232 -111605698 - L1M1 LINE L1 -690 7034 4960 751 162 0 7 chrX 50994230 50994366 -111605564 - L1M1 LINE L1 -7363 202 68 * 7584 224 27 20 chrX 50994380 50994939 -111604991 - L1M1 LINE L1 -4444 3121 2568 189 0 0 0 chrX 50994939 50994960 -111604970 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 243 0 0 0 chrX 50994959 50994986 -111604944 + (TG)n Simple_repeat Simple_repeat 2 28 0 7584 224 27 20 chrX 50994960 50996822 -111603108 - L1M1 LINE L1 -4997 2568 23 402 373 7 7 chrX 50997484 50997634 -111602296 - MIR SINE MIR -101 161 12 893 296 8 8 chrX 50997783 50998036 -111601894 + MIR SINE MIR 10 262 0 238 191 0 0 chrX 50998665 50998712 -111601218 + L1MA4A LINE L1 6234 6280 -23 1918 156 0 10 chrX 50998719 50999007 -111600923 + AluSq SINE Alu 1 285 -28 28 0 0 0 chrX 50999008 50999036 -111600894 + AT_rich Low_complexity Low_complexity 1 28 0 34981 101 21 9 chrX 50999839 51005898 -111594032 + L1PA6 LINE L1 2 6135 -19 192 77 0 0 chrX 51005898 51005924 -111594006 + (TA)n Simple_repeat Simple_repeat 1 26 0 19047 202 23 50 chrX 51007125 51010050 -111589880 + L1PA12 LINE L1 9 3010 -4574 257 0 30 0 chrX 51010050 51010083 -111589847 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2004 138 3 0 chrX 51010086 51010377 -111589553 - AluSx SINE Alu -20 292 1 19047 202 23 50 chrX 51010377 51013004 -111586926 + L1PA12 LINE L1 3012 6505 -1079 5952 170 66 11 chrX 51013104 51015205 -111584725 + L1PBa LINE L1 1763 3978 -2884 1741 158 3 4 chrX 51015334 51015656 -111584274 + L1M LINE L1 5023 5342 -815 189 261 0 0 chrX 51015659 51015705 -111584225 + L2 LINE L2 3268 3313 0 5468 112 15 11 chrX 51015778 51015937 -111583993 + L1PA11 LINE L1 5328 5485 -689 2751 16 0 0 chrX 51015937 51016242 -111583688 + AluYa5 SINE Alu 1 305 -6 5468 112 15 11 chrX 51016242 51016925 -111583005 + L1PA11 LINE L1 5485 6174 0 465 241 30 38 chrX 51017072 51017205 -111582725 + L2 LINE L2 3182 3313 0 515 294 131 32 chrX 51017415 51017667 -111582263 - L2 LINE L2 -1 3312 3036 627 239 92 14 chrX 51017870 51018127 -111581803 - L1MC4a LINE L1 -336 5842 5566 437 335 68 25 chrX 51018127 51018510 -111581420 + MLT1I LTR MaLR 3 407 -2 304 243 229 21 chrX 51020052 51020192 -111579738 + HAL1 LINE L1 821 989 -1518 1068 304 170 5 chrX 51020521 51021150 -111578780 + HAL1 LINE L1 1192 1924 -583 273 219 0 0 chrX 51021445 51021509 -111578421 + HAL1 LINE L1 2082 2145 -362 286 203 122 49 chrX 51021518 51021641 -111578289 + HAL1 LINE L1 2376 2507 0 886 217 28 0 chrX 51022048 51022228 -111577702 + L1MD2 LINE L1 26 210 -6330 1497 239 76 105 chrX 51022259 51022841 -111577089 + L1MD2 LINE L1 201 765 -5775 2870 262 57 19 chrX 51022846 51024335 -111575595 + L1MD2 LINE L1 3470 5050 -1490 1581 166 146 86 chrX 51024335 51024447 -111575483 + MLT1C LTR MaLR 1 105 -362 1999 142 0 0 chrX 51024447 51024742 -111575188 - AluSx SINE Alu 0 312 18 1581 166 146 86 chrX 51024742 51024870 -111575060 + MLT1C LTR MaLR 105 224 -243 1912 164 118 18 chrX 51024870 51025259 -111574671 - MSTA LTR MaLR 0 428 1 1581 166 146 86 chrX 51025259 51025457 -111574473 + MLT1C LTR MaLR 224 466 -1 3621 218 28 35 chrX 51025504 51026443 -111573487 + L1MD2 LINE L1 5071 5941 -695 2424 71 3 0 chrX 51026443 51026737 -111573193 + AluY SINE Alu 1 295 -16 3621 218 28 35 chrX 51026737 51027428 -111572502 + L1MD2 LINE L1 5941 6636 0 232 349 15 0 chrX 51027451 51027517 -111572413 + L2 LINE L2 3205 3271 -1 249 98 0 0 chrX 51027700 51027741 -111572189 + (CA)n Simple_repeat Simple_repeat 2 42 0 8339 177 50 4 chrX 51028196 51029768 -111570162 + L1PBa LINE L1 10 1654 -5209 1152 260 26 2 chrX 51029888 51030317 -111569613 + L1MD2 LINE L1 4964 5406 -758 2167 158 14 65 chrX 51030319 51030750 -111569180 - MLT2D LTR ERVL 0 414 6 3613 216 68 14 chrX 51030756 51031468 -111568462 + L1MD2 LINE L1 5404 6175 -184 300 53 0 0 chrX 51031468 51031506 -111568424 + (CA)n Simple_repeat Simple_repeat 2 39 0 3613 216 68 14 chrX 51031506 51031691 -111568239 + L1MD2 LINE L1 6175 6349 -10 339 333 0 0 chrX 51031698 51031785 -111568145 - MER5A DNA MER1_type -54 135 49 207 0 0 0 chrX 51031787 51031810 -111568120 + (CTG)n Simple_repeat Simple_repeat 1 23 0 383 335 62 6 chrX 51031948 51032127 -111567803 - MIR SINE MIR -21 241 53 355 296 132 26 chrX 51032226 51032378 -111567552 - MIR SINE MIR -18 244 77 * 474 300 15 0 chrX 51032366 51032496 -111567434 + L2 LINE L2 3182 3313 0 199 268 0 0 chrX 51032495 51032536 -111567394 - MIR SINE MIR -221 41 1 * 5167 179 38 12 chrX 51033395 51035391 -111564539 - L1MA4 LINE L1 -9 7710 5666 1569 193 24 17 chrX 51035403 51035903 -111564027 - L1MA4 LINE L1 -3650 3915 3411 3347 139 17 7 chrX 51035922 51036510 -111563420 - L1MA3 LINE L1 -1 6304 5711 1142 124 5 11 chrX 51036535 51036720 -111563210 - L1PB1 LINE L1 -3 6148 5965 19799 39 1 0 chrX 51036834 51039565 -111560365 - L1P1 LINE L1 -501 5654 2922 14580 42 4 2 chrX 51039561 51041380 -111558550 + L1P1 LINE L1 1109 2931 -3215 * 478 287 27 20 chrX 51041568 51041718 -111558212 + MIR SINE MIR 33 183 -79 2206 251 69 0 chrX 51041805 51042471 -111557459 - L1M4 LINE L1 -1455 4691 3980 737 226 54 10 chrX 51042780 51042984 -111556946 - L1M4 LINE L1 -2157 3989 3777 183 333 0 67 chrX 51043241 51043316 -111556614 + L3 LINE CR1 458 527 -1050 453 283 21 28 chrX 51044183 51044328 -111555602 + MIR SINE MIR 119 262 0 1897 111 32 11 chrX 51044458 51044737 -111555193 + AluSq SINE Alu 21 305 -8 640 259 54 32 chrX 51045036 51045221 -111554709 - MIR SINE MIR -54 208 20 600 330 70 18 chrX 51045533 51045818 -111554112 - L2 LINE L2 0 3313 3014 1935 141 3 10 chrX 51046523 51046822 -111553108 - AluSx SINE Alu -15 297 1 2086 92 50 4 chrX 51047455 51047736 -111552194 - AluSx SINE Alu -18 294 1 237 294 62 62 chrX 51048296 51048442 -111551488 - L2 LINE L2 0 3313 3168 487 256 71 98 chrX 51048499 51048753 -111551177 - MIR SINE MIR 0 262 16 1586 210 107 107 chrX 51048848 51049467 -111550463 + MLT1E2 LTR MaLR 3 623 -3 209 211 22 133 chrX 51049554 51049644 -111550286 + MIR3 SINE MIR 111 190 -18 198 320 64 0 chrX 51049719 51049797 -111550133 - L3 LINE CR1 -10 1567 1485 1451 199 0 64 chrX 51049844 51050155 -111549775 + AluJo SINE Alu 1 291 -21 5177 177 46 7 chrX 51050584 51051661 -111548269 + L1MA5 LINE L1 4093 5211 -935 25 31 0 0 chrX 51051675 51051707 -111548223 + AT_rich Low_complexity Low_complexity 1 32 0 1008 206 0 22 chrX 51051708 51051931 -111547999 + L1MA5 LINE L1 5782 5999 -301 * 19292 176 30 18 chrX 51051901 51054083 -111545847 + L1M1 LINE L1 2 2158 -5529 1694 130 4 4 chrX 51054083 51054379 -111545551 + AluSc SINE Alu 34 329 0 19292 176 30 18 chrX 51054379 51055016 -111544914 + L1M1 LINE L1 2158 2786 -4901 4461 39 2 0 chrX 51055016 51055557 -111544373 + L1PA4 LINE L1 5613 6154 -1 19292 176 30 18 chrX 51055557 51059601 -111540329 + L1M1 LINE L1 2786 6944 -743 2281 162 3 5 chrX 51059603 51059974 -111539956 - THE1C LTR MaLR -5 370 1 9553 126 28 34 chrX 51059992 51061540 -111538390 - THE1C-int LTR MaLR -42 1538 1 2371 135 5 3 chrX 51061543 51061914 -111538016 - THE1C LTR MaLR -3 372 1 2033 84 0 3 chrX 51061914 51062198 -111537732 + L1M1 LINE L1 6940 7222 -499 * 22963 117 8 10 chrX 51062190 51065719 -111534211 + L1P LINE L1 4 3525 -2621 761 284 73 8 chrX 51065759 51066129 -111533801 + L2 LINE L2 1787 2180 -1134 487 354 28 5 chrX 51066486 51066698 -111533232 - MIR SINE MIR -7 255 39 2498 138 44 5 chrX 51066738 51067150 -111532780 - MSTA LTR MaLR 0 428 1 1200 235 88 9 chrX 51067276 51067604 -111532326 + L1ME3A LINE L1 5807 6160 -10 642 217 105 0 chrX 51067744 51067887 -111532043 + MIR SINE MIR 40 197 -65 1510 206 69 95 chrX 51070121 51070232 -111529698 - Charlie2 DNA MER1_type -69 2793 2681 2658 129 24 9 chrX 51070232 51070658 -111529272 + MER57B LTR ERV1 3 434 0 1510 206 69 95 chrX 51070658 51070989 -111528941 - Charlie2 DNA MER1_type -181 2681 2377 2351 135 15 8 chrX 51070989 51071390 -111528540 + L1MA5 LINE L1 5896 6299 -1 1510 206 69 95 chrX 51071390 51071711 -111528219 - Charlie2 DNA MER1_type -485 2377 2049 372 22 0 0 chrX 51072536 51072581 -111527349 + (CAT)n Simple_repeat Simple_repeat 1 45 0 646 158 8 33 chrX 51072682 51072850 -111527080 - FLAM_C SINE Alu 0 165 1 622 296 49 18 chrX 51072993 51073219 -111526711 - MER102b DNA MER1_type -14 327 95 447 267 41 35 chrX 51073625 51073797 -111526133 - MIR SINE MIR -84 178 6 292 283 28 62 chrX 51073940 51074085 -111525845 - L1ME LINE L1 -458 5663 5524 501 274 139 35 chrX 51074112 51074313 -111525617 - MIR SINE MIR 0 262 41 253 283 0 0 chrX 51074423 51074483 -111525447 + CT-rich Low_complexity Low_complexity 4 63 0 442 302 130 32 chrX 51074483 51074821 -111525109 - L1ME LINE L1 -786 5360 4990 264 196 0 0 chrX 51075002 51075048 -111524882 - AluSp/q SINE Alu -35 268 223 1233 195 41 49 chrX 51075181 51075448 -111524482 - AluJb SINE Alu -47 265 1 215 253 121 22 chrX 51076233 51076324 -111523606 + MER5A DNA MER1_type 51 150 -39 * 293 214 0 18 chrX 51076272 51076328 -111523602 - MER5A DNA MER1_type -89 100 46 481 18 0 0 chrX 51076750 51076806 -111523124 + MADE1 DNA Mariner 1 56 -24 374 43 0 0 chrX 51076826 51076873 -111523057 + MADE1 DNA Mariner 34 80 0 27 0 0 0 chrX 51076943 51076970 -111522960 + AT_rich Low_complexity Low_complexity 1 27 0 288 254 0 77 chrX 51077388 51077518 -111522412 - L1ME4a LINE L1 -55 6066 5947 25 31 0 0 chrX 51077538 51077570 -111522360 + AT_rich Low_complexity Low_complexity 1 32 0 449 302 97 49 chrX 51077695 51078209 -111521721 - L1ME4a LINE L1 -319 5802 5264 270 283 11 11 chrX 51078334 51078426 -111521504 + CT-rich Low_complexity Low_complexity 2 93 0 233 163 20 0 chrX 51078426 51078475 -111521455 - L1ME4a LINE L1 -966 5180 5131 21 36 0 0 chrX 51078868 51078896 -111521034 + GC_rich Low_complexity Low_complexity 1 28 0 412 252 16 31 chrX 51080873 51081000 -111518930 + CT-rich Low_complexity Low_complexity 3 127 0 25 0 0 0 chrX 51081891 51081916 -111518014 + AT_rich Low_complexity Low_complexity 1 25 0 331 276 61 37 chrX 51082262 51082425 -111517505 - L1ME4a LINE L1 -1421 4725 4559 313 332 114 19 chrX 51082654 51082865 -111517065 - L1ME4a LINE L1 -1850 4296 4066 405 180 48 132 chrX 51082936 51083103 -111516827 - MER103 DNA DNA -12 154 2 1875 135 0 25 chrX 51084481 51084762 -111515168 + AluSx SINE Alu 1 274 -38 225 353 88 15 chrX 51085178 51085314 -111514616 + L3 LINE CR1 222 367 -1210 603 241 48 48 chrX 51085360 51085547 -111514383 - MIR SINE MIR -74 188 2 1493 309 149 35 chrX 51085951 51086390 -111513540 + L3 LINE CR1 433 821 -756 2442 70 3 0 chrX 51086390 51086692 -111513238 - AluSg1 SINE Alu -6 303 1 1493 309 149 35 chrX 51086692 51087270 -111512660 + L3 LINE CR1 821 1566 -11 1186 196 29 25 chrX 51088147 51088392 -111511538 - AluJo SINE Alu -66 246 1 1581 145 23 88 chrX 51088404 51088627 -111511303 - L1MC3 LINE L1 -2 7783 7547 1818 138 29 4 chrX 51088627 51088902 -111511028 - AluJb SINE Alu -30 282 1 1581 145 23 88 chrX 51088902 51089188 -111510742 - L1MC3 LINE L1 -238 7547 7214 269 298 41 8 chrX 51089188 51089309 -111510621 - MLT1F1 LTR MaLR -419 148 24 6564 173 48 22 chrX 51089309 51090673 -111509257 - L1MC3 LINE L1 -700 7085 5686 21 0 0 0 chrX 51090770 51090791 -111509139 + AT_rich Low_complexity Low_complexity 1 21 0 1765 123 0 83 chrX 51090846 51091170 -111508760 - AluSx SINE Alu -15 297 1 11467 204 27 21 chrX 51091199 51093995 -111505935 - L1PA16 LINE L1 -6 6863 4020 2302 111 0 0 chrX 51093995 51094302 -111505628 - AluSg SINE Alu -3 307 1 11467 204 27 21 chrX 51094302 51096497 -111503433 - L1PA16 LINE L1 -2849 4020 1838 * 41634 43 1 2 chrX 51096492 51102645 -111497285 - L1PA3 LINE L1 0 6155 7 7960 181 41 8 chrX 51102648 51104126 -111495804 - L1PA16 LINE L1 -4993 1856 331 299 281 103 27 chrX 51104284 51104573 -111495357 - L1MC/D LINE L1 -531 5590 5488 486 317 51 48 chrX 51104584 51104877 -111495053 - L1MC/D LINE L1 -1555 4591 4298 248 300 67 48 chrX 51104884 51105317 -111494613 - L1MC/D LINE L1 -1988 4158 3718 4906 152 7 4 chrX 51105650 51106677 -111493253 - L1PA15 LINE L1 -1 6164 5128 27077 120 25 64 chrX 51106677 51110332 -111489598 - L1PA7 LINE L1 -7 6147 2859 243 0 0 0 chrX 51110332 51110359 -111489571 + (TA)n Simple_repeat Simple_repeat 2 28 0 27077 120 25 64 chrX 51110359 51113100 -111486830 - L1PA7 LINE L1 -3295 2859 12 1569 147 13 20 chrX 51113113 51113413 -111486517 - MER4D LTR ERV1 -598 305 8 380 160 27 13 chrX 51113421 51113496 -111486434 - L1P4 LINE L1 -517 5649 5574 1276 190 27 11 chrX 51113498 51113761 -111486169 + L1PA16 LINE L1 5825 6091 -75 597 173 87 16 chrX 51113761 51113888 -111486042 + MER4D LTR ERV1 736 871 -1 428 167 0 0 chrX 51113889 51113967 -111485963 + L1P4 LINE L1 5647 5724 -442 226 167 0 0 chrX 51113996 51114044 -111485886 + L1PA16 LINE L1 6118 6165 -1 733 248 68 56 chrX 51114063 51114385 -111485545 + L1MCb LINE L1 419 744 -5301 544 296 27 32 chrX 51114623 51114809 -111485121 - MIR SINE MIR -10 252 68 360 0 0 0 chrX 51114860 51114900 -111485030 + (TG)n Simple_repeat Simple_repeat 2 41 0 253 203 68 14 chrX 51115134 51115208 -111484722 + MLT1E2 LTR MaLR 1 78 -427 288 200 14 29 chrX 51115217 51115287 -111484643 + LTR24B LTR ERV1 9 77 -499 560 265 31 26 chrX 51115433 51115694 -111484236 + LTR24B LTR ERV1 206 569 0 1264 234 48 63 chrX 51115695 51116152 -111483778 + MLT1E2 LTR MaLR 73 522 -104 244 276 0 0 chrX 51116176 51116234 -111483696 - LTR39 LTR ERV1 0 783 726 2324 116 6 3 chrX 51116234 51116588 -111483342 - THE1A LTR MaLR 0 355 1 11246 107 11 1 chrX 51116588 51118152 -111481778 - THE1A-int LTR MaLR 0 1580 1 2549 83 11 0 chrX 51118152 51118503 -111481427 - THE1A LTR MaLR 0 355 1 * 2728 186 41 26 chrX 51118503 51118624 -111481306 - LTR39 LTR ERV1 -57 726 609 2113 130 7 0 chrX 51118624 51118925 -111481005 + AluSq SINE Alu 1 303 -10 2728 186 41 26 chrX 51118925 51119482 -111480448 - LTR39 LTR ERV1 -174 609 1 2799 187 31 18 chrX 51119728 51120856 -111479074 + L1M1 LINE L1 4599 5748 -556 2188 224 5 2 chrX 51120913 51121359 -111478571 - L1PA13 LINE L1 -6336 451 5 1368 238 29 47 chrX 51121378 51121866 -111478064 + L1MA4A LINE L1 4051 4529 -1617 1006 221 47 0 chrX 51121869 51122170 -111477760 + L1MA4A LINE L1 5007 5322 -849 1304 202 151 14 chrX 51122174 51122526 -111477404 - MSTA LTR MaLR 0 428 29 4386 132 14 12 chrX 51122537 51123256 -111476674 - MSTA-int LTR MaLR 0 1580 861 1388 252 44 24 chrX 51123256 51123796 -111476134 + MLT2A2 LTR ERVL 1 553 -1 4691 149 2 54 chrX 51123796 51124707 -111475223 - MSTA-int LTR MaLR -714 866 3 1669 176 158 13 chrX 51124709 51125083 -111474847 - MSTA LTR MaLR 0 428 1 4142 173 60 15 chrX 51125089 51126018 -111473912 + L1MA4A LINE L1 5328 6298 -5 3285 203 59 44 chrX 51126015 51126547 -111473383 + L1MC1 LINE L1 5284 5837 -496 * 1915 106 70 40 chrX 51126547 51126848 -111473082 + AluSg SINE Alu 1 310 0 3285 203 59 44 chrX 51126848 51127210 -111472720 + L1MC1 LINE L1 5837 6192 -141 4468 155 35 5 chrX 51127211 51128063 -111471867 - Tigger3(Golem) DNA MER2_type -1 3028 2151 456 56 28 14 chrX 51128069 51128141 -111471789 - L1PA11 LINE L1 0 6174 6102 255 103 0 0 chrX 51128189 51128228 -111471702 + (TG)n Simple_repeat Simple_repeat 2 40 0 470 31 16 0 chrX 51128289 51128353 -111471577 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 549 0 0 0 chrX 51128356 51128417 -111471513 + (TA)n Simple_repeat Simple_repeat 1 61 0 494 303 28 63 chrX 51128555 51128839 -111471091 + MLT1L LTR MaLR 1 274 -341 230 338 149 5 chrX 51129044 51129266 -111470664 + MLT1L LTR MaLR 355 608 -7 500 356 45 75 chrX 51129595 51129971 -111469959 + L2 LINE L2 2896 3260 -12 1989 142 3 6 chrX 51130018 51130348 -111469582 - MER4C LTR ERV1 -2 463 135 2201 209 89 86 chrX 51130352 51130681 -111469249 - LTR28 LTR ERV1 -5 1015 689 3977 100 8 45 chrX 51130681 51131310 -111468620 - LTR14B LTR ERVK 0 608 3 2201 209 89 86 chrX 51131310 51131913 -111468017 - LTR28 LTR ERV1 -331 689 30 337 109 0 0 chrX 51131933 51131988 -111467942 - MER4C LTR ERV1 -332 133 79 6204 77 7 0 chrX 51132008 51132904 -111467026 - L1PA8A LINE L1 -28 6103 5203 493 158 0 11 chrX 51132904 51132999 -111466931 - MER4C LTR ERV1 -371 94 1 342 0 0 0 chrX 51133051 51133089 -111466841 + (A)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 51133720 51133748 -111466182 + AT_rich Low_complexity Low_complexity 1 28 0 210 191 0 0 chrX 51134125 51134167 -111465763 + GA-rich Low_complexity Low_complexity 4 45 0 725 218 109 21 chrX 51135955 51136148 -111463782 - MIR SINE MIR -4 258 49 325 307 22 22 chrX 51136604 51136741 -111463189 + MIR SINE MIR 126 262 0 457 265 93 7 chrX 51137043 51137247 -111462683 + MIR SINE MIR 2 262 0 189 316 73 93 chrX 51137264 51137511 -111462419 - L2 LINE L2 -493 2821 2580 911 221 0 33 chrX 51138462 51138478 -111461452 - AluJb SINE Alu 0 312 297 352 0 0 0 chrX 51138478 51138517 -111461413 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 911 221 0 33 chrX 51138517 51138713 -111461217 - AluJb SINE Alu -15 297 107 248 88 0 0 chrX 51138879 51138913 -111461017 + U2 snRNA snRNA 3 36 -152 7895 115 19 0 chrX 51138959 51140988 -111458942 + L1PA8A LINE L1 4046 6110 -21 547 245 112 116 chrX 51141037 51141308 -111458622 - MLT1J LTR MaLR -32 479 209 2006 145 3 0 chrX 51141308 51141605 -111458325 - AluSx SINE Alu -9 303 6 547 245 112 116 chrX 51141605 51141814 -111458116 - MLT1J LTR MaLR -302 209 1 258 375 100 0 chrX 51142013 51142093 -111457837 + L2 LINE L2 3134 3221 -51 195 42 0 0 chrX 51142122 51142146 -111457784 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 3790 255 40 17 chrX 51142398 51143790 -111456140 + L1P3 LINE L1 1592 3008 -3453 4332 135 20 12 chrX 51143798 51144541 -111455389 - L1PA14 LINE L1 0 6476 5728 40175 58 3 1 chrX 51144551 51150693 -111449237 - L1PA4 LINE L1 -3 6152 2 948 139 20 2 chrX 51150697 51150980 -111448950 - L1PA14 LINE L1 -734 5742 5455 40538 55 1 1 chrX 51150981 51157136 -111442794 + L1PA3 LINE L1 1 6152 -3 10718 224 19 28 chrX 51157186 51158527 -111441403 - L1PA14 LINE L1 -995 5466 4115 1861 173 0 13 chrX 51158527 51158833 -111441097 - AluSx SINE Alu -10 302 1 10718 224 19 28 chrX 51158833 51160498 -111439432 - L1PA14 LINE L1 -2346 4115 2486 4444 124 15 1 chrX 51160641 51161353 -111438577 - L1PA11 LINE L1 -69 7543 6822 7525 30 6 0 chrX 51161354 51162592 -111437338 - L1PA3 LINE L1 -3 6152 4912 14290 50 1 0 chrX 51162592 51164477 -111435453 + L1P LINE L1 1274 3159 -2987 19005 218 24 17 chrX 51164493 51164556 -111435374 - L1PA11 LINE L1 -762 6822 6761 1949 152 0 3 chrX 51164556 51164868 -111435062 - AluSg SINE Alu 0 310 1 19005 218 24 17 chrX 51164868 51170517 -111429413 - L1PA11 LINE L1 -823 6761 9 675 240 41 45 chrX 51170530 51170797 -111429133 - L1PA14 LINE L1 -3967 2494 2229 6655 93 3 0 chrX 51170798 51171922 -111428008 - L1PA8 LINE L1 -6 6166 5043 4779 90 17 1 chrX 51171923 51172581 -111427349 - L1PA8 LINE L1 0 6172 5505 10227 142 28 17 chrX 51172584 51174567 -111425363 - L1PA14 LINE L1 -4441 2020 1 9997 181 17 39 chrX 51174570 51176896 -111423034 - L1PA12 LINE L1 -4221 3363 1088 945 169 6 44 chrX 51176896 51177135 -111422795 + THE1C LTR MaLR 1 300 -75 2002 147 7 0 chrX 51177135 51177442 -111422488 - AluSq SINE Alu -4 309 1 945 169 6 44 chrX 51177442 51177516 -111422414 + THE1C LTR MaLR 300 375 0 2214 126 30 0 chrX 51177516 51177880 -111422050 + THE1C-int LTR MaLR 1 375 -1205 7093 54 0 3 chrX 51177883 51179525 -111420405 - L1PA5 LINE L1 -2 6152 4508 1848 59 0 0 chrX 51179525 51179779 -111420151 - L1PA5 LINE L1 -2219 3927 3674 6690 138 56 25 chrX 51179779 51180966 -111418964 + THE1C-int LTR MaLR 358 1580 0 2346 137 5 8 chrX 51180970 51181342 -111418588 + THE1C LTR MaLR 5 375 0 1941 206 5 14 chrX 51181342 51181710 -111418220 - L1PA12 LINE L1 -6219 1362 998 1058 266 31 17 chrX 51181746 51182228 -111417702 + L1P LINE L1 2710 3198 -2948 3443 216 31 32 chrX 51182238 51183296 -111416634 + L1P LINE L1 4270 5326 -820 1816 185 43 35 chrX 51183297 51183845 -111416085 - MLT2A2 LTR ERVL -1 553 1 19407 116 17 14 chrX 51183845 51186741 -111413189 - HERVL-A2-A2 LTR ERVL 0 5654 2567 2073 104 36 19 chrX 51186741 51187049 -111412881 - AluSp SINE Alu 0 313 1 19407 116 17 14 chrX 51187049 51188665 -111411265 - HERVL-A2-A2 LTR ERVL -3087 2567 956 32499 113 15 15 chrX 51188675 51194819 -111405111 + L1PA7 LINE L1 11 6149 -5 3475 166 4 6 chrX 51194823 51195723 -111404207 - HERVL-A2-A2 LTR ERVL -4687 967 1 1833 194 39 29 chrX 51195723 51196271 -111403659 - MLT2A2 LTR ERVL 0 554 1 3849 148 21 18 chrX 51196271 51196951 -111402979 + THE1-int LTR MaLR 861 1542 -38 988 192 8 17 chrX 51196959 51197199 -111402731 + L1PA15 LINE L1 4632 4869 -1277 * 4348 160 23 4 chrX 51197192 51197980 -111401950 + L1PA15 LINE L1 5357 6159 -6 981 187 0 120 chrX 51197972 51198272 -111401658 - L1 LINE L1 -2077 4069 3806 * 25 0 0 0 chrX 51198272 51198297 -111401633 + AT_rich Low_complexity Low_complexity 1 25 0 21130 141 74 23 chrX 51198315 51198554 -111401376 - L1PA8A LINE L1 -658 5788 5562 2183 130 7 3 chrX 51198554 51198862 -111401068 - AluSx SINE Alu -3 309 1 21130 141 74 23 chrX 51198862 51204027 -111395903 - L1PA8A LINE L1 -884 5562 10 1332 233 11 3 chrX 51204054 51204419 -111395511 + L1MA9 LINE L1 5936 6303 -9 183 309 15 29 chrX 51204465 51204533 -111395397 + MER5A DNA MER1_type 99 165 -24 192 298 189 5 chrX 51204907 51205098 -111394832 + L2 LINE L2 1242 1467 -1847 249 57 0 0 chrX 51205141 51205176 -111394754 + (GA)n Simple_repeat Simple_repeat 2 36 0 799 200 35 6 chrX 51205608 51205778 -111394152 + MIR SINE MIR 1 175 -87 3836 157 8 51 chrX 51205782 51206556 -111393374 + L1PB2 LINE L1 4698 5404 -747 2083 151 3 3 chrX 51206556 51206868 -111393062 + AluSx SINE Alu 1 312 0 3836 157 8 51 chrX 51206868 51207363 -111392567 + L1PB2 LINE L1 5404 5919 -232 2434 121 3 3 chrX 51207363 51207734 -111392196 + L1PB2 LINE L1 5779 6149 -2 349 336 82 0 chrX 51207739 51207885 -111392045 + HAL1 LINE L1 1418 1575 -932 181 222 44 0 chrX 51207888 51207933 -111391997 + MIR SINE MIR 147 193 -69 260 143 18 0 chrX 51207933 51207989 -111391941 + (CA)n Simple_repeat Simple_repeat 2 58 0 435 227 73 55 chrX 51208040 51208150 -111391780 - L2 LINE L2 -15 3298 3187 390 341 158 17 chrX 51208197 51208716 -111391214 + L2 LINE L2 1616 2207 -1107 1880 168 0 0 chrX 51208782 51209068 -111390862 + AluSx SINE Alu 1 286 -26 317 376 8 8 chrX 51209281 51209406 -111390524 + L2 LINE L2 2957 3081 -191 235 371 87 63 chrX 51209645 51209726 -111390204 - L2 LINE L2 -363 2951 2873 2397 168 19 5 chrX 51209726 51210149 -111389781 - MSTB1 LTR MaLR 0 432 4 235 371 87 63 chrX 51210149 51210609 -111389321 - L2 LINE L2 -441 2873 2397 400 262 0 0 chrX 51210662 51210746 -111389184 - L2 LINE L2 0 3313 3230 41230 30 21 1 chrX 51210857 51216889 -111383041 + L1HS LINE L1 1 6155 0 331 323 102 44 chrX 51216910 51217429 -111382501 - L2 LINE L2 -248 3065 2068 345 227 220 21 chrX 51217757 51217898 -111382032 - MIR SINE MIR 0 262 94 10533 97 7 4 chrX 51217900 51219494 -111380436 + L1P LINE L1 3670 5267 -879 5570 103 14 26 chrX 51219519 51220380 -111379550 - L1P3 LINE L1 -5609 852 2 10001 165 14 21 chrX 51220395 51222135 -111377795 - L1PA11 LINE L1 -1 6173 4441 1998 142 6 22 chrX 51222135 51222446 -111377484 - AluSg SINE Alu -4 306 1 10001 165 14 21 chrX 51222446 51223479 -111376451 - L1PA11 LINE L1 -1733 4441 3401 397 246 16 0 chrX 51223598 51223720 -111376210 - L1P LINE L1 -883 5263 5140 40208 61 5 1 chrX 51223721 51229847 -111370083 + L1PA7 LINE L1 1 6148 -6 4906 152 18 8 chrX 51229847 51230874 -111369056 + L1PA15 LINE L1 5128 6164 -1 248 300 67 48 chrX 51231207 51231640 -111368290 + L1MC/D LINE L1 3718 4158 -1988 486 317 51 48 chrX 51231647 51231940 -111367990 + L1MC/D LINE L1 4298 4591 -1555 299 281 103 27 chrX 51231951 51232240 -111367690 + L1MC/D LINE L1 5488 5801 -531 7960 181 41 8 chrX 51232398 51233876 -111366054 + L1PA15-16 LINE L1 331 1856 -4993 6745 82 9 12 chrX 51233879 51234886 -111365044 + L1P LINE L1 7 1010 -5136 4197 175 27 3 chrX 51234994 51235855 -111364075 - L1PA12 LINE L1 -3121 4463 3583 3976 264 33 68 chrX 51235898 51237135 -111362795 - L1PA12 LINE L1 -4271 3313 2034 4118 109 15 7 chrX 51237135 51237741 -111362189 + L1PB1 LINE L1 5539 6149 -2 3976 264 33 68 chrX 51237741 51238798 -111361132 - L1PA12 LINE L1 -5550 2034 1 669 313 106 25 chrX 51238799 51239135 -111360795 - L1ME LINE L1 -366 5755 5377 1562 163 45 6 chrX 51239135 51239467 -111360463 + L1MA7 LINE L1 5943 6287 -4 669 313 106 25 chrX 51239467 51239555 -111360375 - L1ME LINE L1 -744 5377 5298 1115 252 142 34 chrX 51239588 51240046 -111359884 + MLT1F1 LTR MaLR 22 525 -42 1057 234 68 3 chrX 51240507 51240815 -111359115 + LTR37B LTR ERV1 33 360 -108 756 217 26 20 chrX 51240815 51240967 -111358963 + L1PA13 LINE L1 1210 1362 -5425 * 14188 199 40 12 chrX 51240962 51242665 -111357265 + L1P LINE L1 2613 4268 -2529 255 31 0 0 chrX 51242665 51242697 -111357233 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 14188 199 40 12 chrX 51242697 51243993 -111355937 + L1P LINE L1 4268 5715 -1082 2216 138 33 28 chrX 51243993 51244355 -111355575 + THE1B LTR MaLR 1 364 0 14188 199 40 12 chrX 51244355 51244702 -111355228 + L1P LINE L1 5715 6051 -746 11820 213 39 15 chrX 51244713 51247115 -111352815 + L1PBa LINE L1 3 2345 -4517 209 32 0 32 chrX 51247115 51247146 -111352784 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 11820 213 39 15 chrX 51247146 51248770 -111351160 + L1PBa LINE L1 2345 3928 -2934 1974 130 7 11 chrX 51248770 51249172 -111350758 + AluSq SINE Alu 1 401 0 11820 213 39 15 chrX 51249172 51250482 -111349448 + L1PBa LINE L1 3928 5761 -1101 360 94 0 0 chrX 51250627 51250680 -111349250 + (TCC)n Simple_repeat Simple_repeat 2 54 0 251 252 0 9 chrX 51251213 51251320 -111348610 + (CA)n Simple_repeat Simple_repeat 2 107 0 243 0 0 0 chrX 51254518 51254545 -111345385 + (T)n Simple_repeat Simple_repeat 1 27 0 779 208 6 12 chrX 51255766 51256082 -111343848 + CT-rich Low_complexity Low_complexity 1 314 0 234 0 0 0 chrX 51256722 51256748 -111343182 + (T)n Simple_repeat Simple_repeat 1 26 0 341 247 17 6 chrX 51258146 51258324 -111341606 + CT-rich Low_complexity Low_complexity 1 180 0 323 207 0 9 chrX 51258828 51258939 -111340991 + (CA)n Simple_repeat Simple_repeat 1 110 0 300 322 127 29 chrX 51262424 51262669 -111337261 - HAL1 LINE L1 -1165 1342 1074 323 192 0 10 chrX 51263174 51263273 -111336657 + (CA)n Simple_repeat Simple_repeat 1 98 0 247 267 0 0 chrX 51267667 51267727 -111332203 + CT-rich Low_complexity Low_complexity 2 61 0 300 351 57 28 chrX 51267728 51267939 -111331991 - HAL1 LINE L1 -1203 1304 1088 192 40 0 0 chrX 51268537 51268562 -111331368 + (CA)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chrX 51270322 51270346 -111329584 + (A)n Simple_repeat Simple_repeat 1 24 0 502 228 0 12 chrX 51271265 51271436 -111328494 + CT-rich Low_complexity Low_complexity 3 171 0 241 279 0 0 chrX 51271436 51271497 -111328433 + T-rich Low_complexity Low_complexity 3 63 0 279 202 0 0 chrX 51272030 51272114 -111327816 + (CA)n Simple_repeat Simple_repeat 1 84 0 1327 193 0 33 chrX 51272928 51273265 -111326665 + pTR5 LTR ERV1 742 1067 -1371 180 0 0 0 chrX 51274059 51274079 -111325851 + (T)n Simple_repeat Simple_repeat 1 20 0 246 182 0 0 chrX 51275866 51275932 -111323998 + (TG)n Simple_repeat Simple_repeat 1 66 0 353 243 13 13 chrX 51276416 51276568 -111323362 + GA-rich Low_complexity Low_complexity 2 153 0 2363 104 7 0 chrX 51278069 51278378 -111321552 - AluSp SINE Alu -2 311 1 1943 143 65 3 chrX 51280436 51280729 -111319201 - AluSx SINE Alu 0 312 2 260 157 24 36 chrX 51281043 51281126 -111318804 + CT-rich Low_complexity Low_complexity 1 82 0 222 37 0 0 chrX 51281800 51281827 -111318103 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1619 162 38 0 chrX 51281833 51282099 -111317831 - AluSx SINE Alu -36 276 1 31 44 0 0 chrX 51282432 51282477 -111317453 + AT_rich Low_complexity Low_complexity 1 45 0 7778 30 0 10 chrX 51282477 51283817 -111316113 - L1PA3 LINE L1 0 6155 4822 2392 199 55 54 chrX 51283838 51284583 -111315347 - L1M4 LINE L1 -2902 3244 2499 979 302 81 68 chrX 51284584 51285409 -111314521 + L2 LINE L2 1527 2362 -952 307 387 132 11 chrX 51285406 51285672 -111314258 + L2 LINE L2 2967 3264 -8 * 2224 112 3 6 chrX 51285871 51286184 -111313746 + AluSx SINE Alu 1 312 0 3692 136 7 5 chrX 51286339 51286927 -111313003 + L1PA16 LINE L1 5416 6004 -162 308 197 0 0 chrX 51286939 51287000 -111312930 + L1PA16 LINE L1 6097 6157 -9 1146 214 27 8 chrX 51287005 51287267 -111312663 + L1ME3 LINE L1 5894 6160 -2 1018 314 136 27 chrX 51287802 51288580 -111311350 - L2 LINE L2 -561 2753 1891 1173 216 38 50 chrX 51288758 51288831 -111311099 - MER20B DNA MER1_type -145 638 566 1930 159 3 0 chrX 51288831 51289127 -111310803 + AluJb SINE Alu 1 297 -15 1173 216 38 50 chrX 51289127 51289395 -111310535 - MER20B DNA MER1_type -217 566 301 884 360 153 10 chrX 51289759 51290352 -111309578 + L2 LINE L2 1794 2301 -1013 1511 184 61 48 chrX 51290352 51290744 -111309186 + MLT2C1 LTR ERVL 1 397 0 884 360 153 10 chrX 51290744 51291078 -111308852 + L2 LINE L2 2301 2854 -460 215 317 0 17 chrX 51291377 51291437 -111308493 + L2 LINE L2 3232 3290 -23 1646 219 75 96 chrX 51291533 51292172 -111307758 + MLT1E2 LTR MaLR 1 626 0 1346 235 64 30 chrX 51292713 51293185 -111306745 + L1MC4 LINE L1 7431 7918 -124 2750 193 78 16 chrX 51293258 51293918 -111306012 + Tigger7 DNA MER2_type 2 2585 -2 328 208 12 125 chrX 51294179 51294228 -111305702 + L1M4 LINE L1 4998 5051 -1095 2157 102 3 3 chrX 51294228 51294522 -111305408 + AluSp SINE Alu 1 294 -19 328 208 12 125 chrX 51294522 51294640 -111305290 + L1M4 LINE L1 5051 5146 -1000 3425 118 11 10 chrX 51294670 51295341 -111304589 + L1P5 LINE L1 5118 5791 -360 298 289 0 0 chrX 51295383 51295525 -111304405 + (TA)n Simple_repeat Simple_repeat 1 142 0 481 160 19 0 chrX 51295543 51295649 -111304281 + (TA)n Simple_repeat Simple_repeat 1 108 0 250 300 0 0 chrX 51295652 51295742 -111304188 - L1MC4 LINE L1 -1339 6703 6614 * 262 292 0 0 chrX 51295667 51295756 -111304174 + L1MC4 LINE L1 6615 6703 -1339 516 170 0 0 chrX 51295761 51295867 -111304063 + (TA)n Simple_repeat Simple_repeat 1 106 0 212 231 8 0 chrX 51295908 51296038 -111303892 + (TA)n Simple_repeat Simple_repeat 1 131 0 * 222 37 0 0 chrX 51296033 51296060 -111303870 + (TG)n Simple_repeat Simple_repeat 2 28 0 2458 111 3 3 chrX 51296063 51296433 -111303497 + L1PB1 LINE L1 5782 6151 0 701 138 51 7 chrX 51296845 51296983 -111302947 + L1MB2 LINE L1 6019 6162 -9 195 319 21 75 chrX 51297316 51297410 -111302520 - L2 LINE L2 -855 2459 2371 846 213 46 32 chrX 51297423 51297639 -111302291 + MER20 DNA MER1_type 1 219 0 277 366 60 16 chrX 51297647 51297898 -111302032 + L2 LINE L2 2046 2307 -1007 234 313 0 0 chrX 51297967 51298031 -111301899 - L2 LINE L2 -2 3311 3248 429 260 13 26 chrX 51298414 51298568 -111301362 - MER104 DNA Tc2 0 180 29 484 203 68 25 chrX 51299705 51299868 -111300062 + L1MC5 LINE L1 7762 7931 -30 2197 102 16 7 chrX 51300098 51300403 -111299527 + AluSq SINE Alu 4 311 -2 197 328 168 23 chrX 51300783 51300914 -111299016 - L2 LINE L2 -1 3271 3122 1949 129 0 39 chrX 51301138 51301449 -111298481 + AluSx SINE Alu 1 299 -13 227 208 0 0 chrX 51301456 51301504 -111298426 + A-rich Low_complexity Low_complexity 1 48 0 616 255 204 5 chrX 51301557 51301773 -111298157 - MIR SINE MIR 0 262 4 427 277 113 15 chrX 51302233 51302654 -111297276 - L1M4 LINE L1 -1709 4437 3942 431 237 120 19 chrX 51302772 51303097 -111296833 - L1M4 LINE L1 -2946 3200 2843 590 278 137 14 chrX 51305078 51305290 -111294640 - MIR SINE MIR -24 238 1 1900 132 14 3 chrX 51306504 51306799 -111293131 - AluSx SINE Alu -14 298 1 22 0 0 0 chrX 51306807 51306829 -111293101 + AT_rich Low_complexity Low_complexity 1 22 0 421 233 38 25 chrX 51307821 51307980 -111291950 + Charlie2a DNA MER1_type 977 1137 -1725 1362 227 65 20 chrX 51307995 51308444 -111291486 - L1MC4 LINE L1 0 8042 7574 2940 164 63 131 chrX 51308521 51309448 -111290482 - MER21A LTR ERV1 -27 904 82 468 143 0 0 chrX 51309449 51309533 -111290397 + (TA)n Simple_repeat Simple_repeat 2 85 0 189 0 0 0 chrX 51309533 51309554 -111290376 + (GA)n Simple_repeat Simple_repeat 2 22 0 384 175 0 26 chrX 51309657 51309741 -111290189 - MER21A LTR ERV1 -780 83 1 13451 185 43 22 chrX 51309750 51314648 -111285282 - L1MA1 LINE L1 -4 6298 2562 534 223 0 9 chrX 51314932 51315044 -111284886 - ERVL-B2 LTR ERVL -611 5153 5043 5577 192 6 1 chrX 51315044 51316018 -111283912 - ERVL-B2 LTR ERVL -2746 3018 2040 3166 217 19 24 chrX 51316014 51316651 -111283279 - ERVL-B2 LTR ERVL -3925 1839 1206 * 18838 115 9 8 chrX 51317148 51320894 -111279036 - L1PA7 LINE L1 -4 6465 2715 11383 118 13 56 chrX 51320903 51322910 -111277020 - L1PA7 LINE L1 -4530 1931 3 4469 238 72 15 chrX 51322918 51323413 -111276517 - ERVL-B2 LTR ERVL -4550 1214 749 203 0 0 36 chrX 51323413 51323441 -111276489 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 4469 238 72 15 chrX 51323441 51324092 -111275838 - ERVL-B2 LTR ERVL -5015 749 2 2064 255 24 6 chrX 51324093 51324599 -111275331 - MLT2B2 LTR ERVL 0 515 1 406 147 13 13 chrX 51324807 51324882 -111275048 + MADE1 DNA Mariner 1 75 -5 333 233 0 0 chrX 51324976 51325049 -111274881 + L1MC4 LINE L1 6636 6708 -1334 1581 177 33 0 chrX 51325049 51325320 -111274610 - AluJo SINE Alu -31 281 2 22711 42 3 0 chrX 51325439 51329056 -111270874 - L1PA4 LINE L1 -3 6152 2527 4231 60 0 9 chrX 51329056 51329602 -111270328 - L1PA4 LINE L1 -2 6153 5612 18953 72 9 0 chrX 51329602 51332094 -111267836 - L1PA4 LINE L1 -3631 2515 2 420 330 74 41 chrX 51332143 51332385 -111267545 + L1M4 LINE L1 4457 4689 -1457 1832 175 11 0 chrX 51332385 51332671 -111267259 + AluSx SINE Alu 1 289 -23 420 330 74 41 chrX 51332671 51332940 -111266990 + L1M4 LINE L1 4689 4985 -1161 1594 115 167 0 chrX 51332958 51333210 -111266720 - AluSx SINE Alu -18 294 1 204 309 81 37 chrX 51333288 51333424 -111266506 - L2 LINE L2 0 3313 3172 487 321 84 20 chrX 51333430 51333726 -111266204 - MLT1K LTR MaLR -116 472 158 1295 96 5 16 chrX 51333817 51334005 -111265925 - L1PA8 LINE L1 -2 6170 5985 1828 283 61 33 chrX 51334089 51335534 -111264396 + L1M3a LINE L1 12 1203 -4752 831 150 0 0 chrX 51335538 51335665 -111264265 - L1PB3 LINE L1 -18 6136 6010 27 0 0 0 chrX 51335848 51335875 -111264055 + AT_rich Low_complexity Low_complexity 1 27 0 27983 132 15 73 chrX 51336220 51341532 -111258398 + L1PA8 LINE L1 12 4869 -1303 2135 137 0 0 chrX 51341532 51341832 -111258098 + AluSq SINE Alu 1 300 -13 27983 132 15 73 chrX 51341832 51343061 -111256869 + L1PA8 LINE L1 4869 6167 -5 19769 193 35 17 chrX 51343048 51343207 -111256723 - L1 LINE L1 -2509 5056 4901 * 1908 164 3 3 chrX 51343207 51343506 -111256424 - AluSx SINE Alu -13 299 1 19769 193 35 17 chrX 51343506 51344032 -111255898 - L1 LINE L1 -2664 4901 4386 1968 99 52 4 chrX 51344032 51344325 -111255605 - AluY SINE Alu 0 306 1 19769 193 35 17 chrX 51344325 51345088 -111254842 - L1 LINE L1 -3179 4386 3638 1767 121 71 14 chrX 51345088 51345208 -111254722 + AluSp SINE Alu 1 113 -200 222 91 0 0 chrX 51345208 51345241 -111254689 + (CA)n Simple_repeat Simple_repeat 2 34 0 1767 121 71 14 chrX 51345241 51345402 -111254528 + AluSp SINE Alu 113 298 -15 19769 193 35 17 chrX 51345402 51346154 -111253776 - L1 LINE L1 -3927 3638 2901 2020 158 0 0 chrX 51346154 51346451 -111253479 - AluSx SINE Alu -15 297 1 19769 193 35 17 chrX 51346451 51346511 -111253419 - L1 LINE L1 -4664 2901 2844 2636 99 3 0 chrX 51346511 51346865 -111253065 - THE1A LTR MaLR 0 355 1 10583 123 27 0 chrX 51346865 51348403 -111251527 - THE1A-int LTR MaLR 0 1580 1 2575 105 8 0 chrX 51348403 51348755 -111251175 - THE1A LTR MaLR 0 355 1 19769 193 35 17 chrX 51348755 51351433 -111248497 - L1 LINE L1 -4720 2845 12 28 29 0 0 chrX 51351725 51351760 -111248170 + AT_rich Low_complexity Low_complexity 1 35 0 2357 186 25 20 chrX 51352399 51352846 -111247084 + LTR32 LTR ERVL 10 458 -13 6642 224 60 69 chrX 51352846 51354627 -111245303 + HERVL32 LTR ERVL 1438 3202 -592 2170 111 0 0 chrX 51354627 51354933 -111244997 - AluSg SINE Alu 0 306 1 6642 224 60 69 chrX 51354933 51355300 -111244630 + HERVL32 LTR ERVL 3202 3571 -223 1778 194 77 17 chrX 51356129 51356531 -111243399 + MSTB LTR MaLR 1 426 0 325 113 0 0 chrX 51356967 51357020 -111242910 - AluSp SINE Alu 0 303 251 1560 128 5 0 chrX 51357020 51357238 -111242692 - AluSp SINE Alu -94 219 1 1514 317 43 40 chrX 51357496 51358363 -111241567 + PRIMA41-int LTR ERV1 6583 7451 -305 603 233 19 102 chrX 51358281 51358496 -111241434 + HERVL32 LTR ERVL 3215 3411 -7 * 302 265 51 60 chrX 51358506 51358623 -111241307 + LTR32 LTR ERVL 13 128 -343 954 148 0 7 chrX 51358623 51358772 -111241158 + AluSg SINE Alu 1 148 -162 43148 56 2 0 chrX 51358774 51364897 -111235033 + L1PA4 LINE L1 7 6141 -14 1280 130 0 0 chrX 51364899 51365083 -111234847 + AluSg SINE Alu 129 312 0 642 222 0 0 chrX 51365083 51365191 -111234739 + LTR32 LTR ERVL 118 225 -246 1540 207 3 6 chrX 51365192 51365511 -111234419 - LOR1-int LTR ERV1 -3097 5023 4706 11881 194 32 7 chrX 51365518 51365943 -111233987 - L1MA2 LINE L1 0 6304 5891 3057 167 39 78 chrX 51365943 51366662 -111233268 - LTR8 LTR ERV1 0 691 1 11881 194 32 7 chrX 51366662 51368511 -111231419 - L1MA2 LINE L1 -413 5891 3892 7636 34 0 0 chrX 51368511 51369849 -111230081 - L1PA3 LINE L1 0 6155 4817 11881 194 32 7 chrX 51369849 51371353 -111228577 - L1MA2 LINE L1 -2412 3892 2428 289 103 0 0 chrX 51371354 51371393 -111228537 + Alu SINE Alu 1 39 -264 182 253 0 13 chrX 51373359 51373438 -111226492 + CT-rich Low_complexity Low_complexity 2 79 0 705 136 32 7 chrX 51373458 51373613 -111226317 + CT-rich Low_complexity Low_complexity 2 160 0 333 191 29 0 chrX 51373629 51373734 -111226196 + CT-rich Low_complexity Low_complexity 2 109 0 352 300 18 0 chrX 51374171 51374341 -111225589 + (CA)n Simple_repeat Simple_repeat 2 174 0 212 122 20 20 chrX 51376114 51376163 -111223767 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 380 236 0 8 chrX 51377652 51377779 -111222151 + CT-rich Low_complexity Low_complexity 2 127 0 465 178 0 0 chrX 51378276 51378394 -111221536 + (CA)n Simple_repeat Simple_repeat 1 118 0 198 0 0 0 chrX 51380177 51380199 -111219731 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 11532 110 9 57 chrX 51382200 51388591 -111211339 - L1PA7 LINE L1 -4 6150 2 235 232 0 18 chrX 51389148 51389204 -111210726 + CT-rich Low_complexity Low_complexity 1 55 0 1575 54 10 0 chrX 51389358 51389561 -111210369 + L1PA5 LINE L1 5935 6139 -15 219 331 0 0 chrX 51390330 51390457 -111209473 + T-rich Low_complexity Low_complexity 1 127 0 1999 135 0 10 chrX 51390869 51391166 -111208764 - AluSc SINE Alu -13 296 3 22 0 0 0 chrX 51391676 51391698 -111208232 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chrX 51392367 51392402 -111207528 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chrX 51392965 51392989 -111206941 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chrX 51393066 51393098 -111206832 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chrX 51393276 51393302 -111206628 + AT_rich Low_complexity Low_complexity 1 26 0 206 79 0 53 chrX 51394067 51394105 -111205825 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 28 0 0 0 chrX 51394593 51394621 -111205309 + AT_rich Low_complexity Low_complexity 1 28 0 2452 210 41 33 chrX 51394944 51395702 -111204228 + L1MB8 LINE L1 4521 5272 -902 1879 139 3 37 chrX 51395702 51396027 -111203903 + AluSx SINE Alu 1 315 0 2452 210 41 33 chrX 51396027 51396359 -111203571 + L1MB8 LINE L1 5272 5626 -548 1993 82 96 14 chrX 51396359 51396641 -111203289 + AluSx SINE Alu 1 305 -7 2452 210 41 33 chrX 51396641 51396902 -111203028 + L1MB8 LINE L1 5626 5884 -290 696 250 39 58 chrX 51396941 51397249 -111202681 + L1MB8 LINE L1 5861 6162 -16 2255 94 13 7 chrX 51397304 51397602 -111202328 - AluSp SINE Alu -13 300 1 5440 244 143 25 chrX 51397631 51397800 -111202130 + L1M3e LINE L1 6 154 -6953 1733 132 4 0 chrX 51397800 51398042 -111201888 + AluSx SINE Alu 54 296 -16 5440 244 143 25 chrX 51398042 51400483 -111199447 + L1M3e LINE L1 154 2922 -4185 432 151 11 32 chrX 51400486 51400579 -111199351 - ERVL LTR ERVL -137 5627 5537 3099 45 0 3 chrX 51400749 51401126 -111198804 + L1PA6 LINE L1 5768 6143 -11 4493 51 5 0 chrX 51401146 51401715 -111198215 - HERVK11 LTR ERVK -427 7526 6955 * 42138 78 9 2 chrX 51401703 51407455 -111192475 - HERVK11 LTR ERVK -1188 6765 970 27973 49 3 2 chrX 51407460 51411973 -111187957 + L1PA4 LINE L1 1631 6147 -8 17904 60 4 1 chrX 51411988 51414457 -111185473 + L1P LINE L1 2423 4898 -1248 1850 52 0 0 chrX 51414456 51414707 -111185223 - L1P LINE L1 -3514 2632 2382 * 3348 147 2 0 chrX 51414711 51415248 -111184682 - L1P LINE L1 -5598 548 11 508 78 26 0 chrX 51415254 51415331 -111184599 + L1PA7 LINE L1 6068 6146 -8 365 202 28 0 chrX 51415332 51415441 -111184489 - L1M1 LINE L1 -5032 2533 2422 261 213 0 80 chrX 51415441 51415516 -111184414 - AluJ/monomer SINE Alu 0 302 234 2941 200 42 3 chrX 51415516 51416166 -111183764 - L1M1 LINE L1 -5135 2430 1756 10313 171 96 13 chrX 51416312 51416426 -111183504 - L1 LINE L1 -3705 3860 3757 2319 170 24 5 chrX 51416426 51416843 -111183087 + MSTA LTR MaLR 4 428 0 10313 171 96 13 chrX 51416843 51417200 -111182730 - L1 LINE L1 -3808 3757 3431 365 0 22 0 chrX 51417200 51417245 -111182685 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 10313 171 96 13 chrX 51417245 51419146 -111180784 - L1 LINE L1 -4134 3431 1294 1035 176 73 42 chrX 51419258 51419571 -111180359 + LOR1-int LTR ERV1 4258 4580 -3540 574 167 0 0 chrX 51419571 51419661 -111180269 + AluJb SINE Alu 200 289 -23 2318 148 55 72 chrX 51419663 51420232 -111179698 - LOR1b-int LTR ERV1 -7111 1009 451 1184 202 12 12 chrX 51420305 51420553 -111179377 - LOR1b-int LTR ERV1 -7670 450 203 1858 188 9 3 chrX 51420570 51420911 -111179019 - LOR1b-int LTR ERV1 -7749 371 29 1500 211 60 9 chrX 51420924 51421274 -111178656 - LOR1b LTR ERV1 0 461 94 3603 129 0 0 chrX 51421275 51421826 -111178104 + MER41A LTR ERV1 1 551 -3 3256 165 80 3 chrX 51421915 51422503 -111177427 + MER41A-int LTR ERV1 1 633 -5313 1879 138 52 2 chrX 51422491 51422918 -111177012 + MER41A-int LTR ERV1 1081 3617 -4199 * 1420 169 6 114 chrX 51422924 51423130 -111176800 - AluJo SINE Alu -16 296 138 7473 32 0 0 chrX 51423130 51424070 -111175860 - L1PA3 LINE L1 -8 6147 5207 1420 169 6 114 chrX 51424070 51424195 -111175735 - AluJo SINE Alu -174 138 1 2134 163 56 12 chrX 51424197 51424694 -111175236 + MER41A-int LTR ERV1 3606 4124 -3692 12367 153 11 21 chrX 51424694 51428300 -111171630 + L1PA7 LINE L1 2 3579 -2882 42208 65 3 1 chrX 51428305 51434447 -111165483 + L1PA4 LINE L1 4 6155 0 8056 138 4 35 chrX 51434436 51435823 -111164107 + L1PA7 LINE L1 3564 4907 -1554 * 6444 111 8 0 chrX 51435826 51437247 -111162683 + L1PA7 LINE L1 5031 6466 -3 11990 131 21 20 chrX 51437248 51438415 -111161515 + MER41A-int LTR ERV1 2555 3720 -2226 1952 188 36 28 chrX 51438415 51438776 -111161154 + THE1B LTR MaLR 1 364 0 11990 131 21 20 chrX 51438776 51439505 -111160425 + MER41A-int LTR ERV1 3720 4447 -1499 1814 142 0 25 chrX 51439505 51439830 -111160100 + AluSq SINE Alu 9 326 0 11990 131 21 20 chrX 51439830 51440500 -111159430 + MER41A-int LTR ERV1 4447 5944 -2 2946 137 4 4 chrX 51440501 51440953 -111158977 + MER41A LTR ERV1 2 453 -101 965 186 0 0 chrX 51440962 51441155 -111158775 - L1P LINE L1 -1311 4835 4643 189 74 0 0 chrX 51441161 51441188 -111158742 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 492 141 0 0 chrX 51441191 51441269 -111158661 - L1PA6 LINE L1 -13 6141 6064 234 0 0 0 chrX 51441276 51441302 -111158628 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 32459 128 25 35 chrX 51441327 51447481 -111152449 - L1PA8A LINE L1 -32 6099 2 844 187 0 91 chrX 51447482 51447712 -111152218 - L1P LINE L1 -1491 4655 4447 2797 213 11 0 chrX 51448029 51448584 -111151346 - L1P LINE L1 -1839 4307 3747 1072 223 179 18 chrX 51448584 51448925 -111151005 + MSTB LTR MaLR 1 396 -30 3280 55 3 0 chrX 51448925 51449306 -111150624 - L1PA6 LINE L1 -3 6151 5770 12906 113 11 7 chrX 51449311 51449344 -111150586 - L1PA6 LINE L1 0 6154 6123 2971 9 0 0 chrX 51449344 51449662 -111150268 + AluYb8 SINE Alu 1 318 0 12906 113 11 7 chrX 51449662 51455663 -111144267 - L1PA6 LINE L1 -31 6123 11 262 162 20 0 chrX 51455664 51455713 -111144217 + THE1B LTR MaLR 323 364 0 1376 210 78 0 chrX 51455715 51456010 -111143920 + MSTA-int LTR MaLR 3 320 -1260 4855 213 8 14 chrX 51456010 51456941 -111142989 + MSTA-int LTR MaLR 656 1580 0 1875 161 161 13 chrX 51456941 51457314 -111142616 + MSTA LTR MaLR 1 428 0 411 203 8 41 chrX 51457314 51457437 -111142493 - L1 LINE L1 -2395 5189 5071 7883 269 47 24 chrX 51457553 51458740 -111141190 - L1PA12 LINE L1 -3787 3797 2639 1882 157 178 22 chrX 51458740 51459110 -111140820 + MSTA LTR MaLR 1 428 0 7883 269 47 24 chrX 51459110 51462393 -111137537 - L1PA12 LINE L1 -4945 2639 1 992 252 87 8 chrX 51462392 51462761 -111137169 - L1 LINE L1 -2883 4701 4304 * 1444 96 0 55 chrX 51462761 51462979 -111136951 + AluY SINE Alu 98 303 -8 788 292 25 7 chrX 51462979 51463256 -111136674 - L1 LINE L1 -3269 4315 4034 * 4708 228 26 12 chrX 51463254 51464059 -111135871 + L1 LINE L1 3587 4418 -1728 1333 150 0 5 chrX 51464059 51464266 -111135664 - L1PA14 LINE L1 0 6161 5956 4708 228 26 12 chrX 51464266 51464704 -111135226 + L1 LINE L1 4418 4848 -1298 250 150 83 0 chrX 51464844 51464904 -111135026 - MER4A LTR ERV1 -499 165 101 2344 107 7 0 chrX 51464906 51465214 -111134716 - AluSg SINE Alu 0 310 1 823 150 0 8 chrX 51465214 51465347 -111134583 - MER4A LTR ERV1 -532 132 1 1500 236 37 3 chrX 51465347 51465729 -111134201 + L1 LINE L1 4845 5239 -907 6422 243 81 23 chrX 51465759 51465844 -111134086 + L1M1 LINE L1 12 91 -7474 1983 147 7 0 chrX 51465844 51466137 -111133793 + AluSx SINE Alu 1 295 -17 6422 243 81 23 chrX 51466137 51467715 -111132215 + L1M1 LINE L1 91 1772 -5793 286 188 87 29 chrX 51467842 51467911 -111132019 - MER63 DNA MER1_type -136 700 2 296 130 0 0 chrX 51468114 51468160 -111131770 - L1 LINE L1 -2334 3812 3767 1832 175 3 15 chrX 51468196 51468533 -111131397 - L1 LINE L1 -1113 5033 4701 5681 188 33 26 chrX 51468562 51469675 -111130255 + THE1-int LTR MaLR 427 1547 -33 1717 251 41 16 chrX 51469673 51470238 -111129692 - L1 LINE L1 -2938 3208 2630 * 822 174 72 18 chrX 51470434 51470643 -111129287 - LTR49 LTR ERV1 0 595 404 42404 75 11 2 chrX 51470743 51476131 -111123799 + HERVK11 LTR ERVK 1332 6765 -1188 4814 51 5 0 chrX 51476119 51476688 -111123242 + HERVK11 LTR ERVK 6955 7526 -427 * 26983 51 3 1 chrX 51476705 51481068 -111118862 - L1PA4 LINE L1 -8 6147 1780 5140 74 7 8 chrX 51481067 51481781 -111118149 - L1PA4 LINE L1 -5433 713 1 * 3081 57 50 2 chrX 51481782 51482202 -111117728 + HERVK11 LTR ERVK 7514 7953 0 6508 116 18 37 chrX 51482202 51483293 -111116637 + MER11C LTR ERVK 1 1071 0 6683 215 32 30 chrX 51483295 51483431 -111116499 + L1MA2 LINE L1 3324 3458 -4265 432 0 0 0 chrX 51483431 51483479 -111116451 + (CA)n Simple_repeat Simple_repeat 2 49 0 6683 215 32 30 chrX 51483479 51484828 -111115102 + L1MA2 LINE L1 3458 4803 -2920 2276 89 3 10 chrX 51484828 51485132 -111114798 + AluSc SINE Alu 1 302 -7 6683 215 32 30 chrX 51485132 51485146 -111114784 + L1MA2 LINE L1 4803 4815 -2908 1545 155 14 22 chrX 51485146 51485424 -111114506 + AluSx SINE Alu 31 306 -6 6683 215 32 30 chrX 51485424 51485626 -111114304 + L1MA2 LINE L1 4815 5015 -2708 2100 120 9 29 chrX 51485626 51485942 -111113988 + AluSg SINE Alu 1 310 0 6683 215 32 30 chrX 51485942 51488618 -111111312 + L1MA2 LINE L1 5015 7723 0 1627 190 32 0 chrX 51488630 51488978 -111110952 + L1M2 LINE L1 5428 5786 -526 710 145 7 7 chrX 51488982 51489120 -111110810 + L1MA9 LINE L1 4492 4629 -1517 244 75 75 25 chrX 51489144 51489224 -111110706 + (TA)n Simple_repeat Simple_repeat 1 84 0 1756 163 53 94 chrX 51489231 51489754 -111110176 + L1MA9 LINE L1 5787 6288 -24 593 226 189 25 chrX 51489764 51490007 -111109923 + LTR40b LTR ERVL 178 460 -2 2076 135 5 60 chrX 51490687 51491030 -111108900 - THE1B LTR MaLR 0 364 43 2293 97 3 3 chrX 51491030 51491328 -111108602 + AluSg SINE Alu 5 302 -8 2076 135 5 60 chrX 51491328 51491369 -111108561 - THE1B LTR MaLR -321 43 1 279 71 0 0 chrX 51491566 51491608 -111108322 + (CA)n Simple_repeat Simple_repeat 1 42 0 204 214 0 0 chrX 51491751 51491793 -111108137 + (CA)n Simple_repeat Simple_repeat 2 43 0 956 266 87 46 chrX 51492140 51492713 -111107217 + HAL1 LINE L1 1843 2446 -61 1536 221 45 11 chrX 51492713 51493066 -111106864 + MLT1A1 LTR MaLR 1 365 0 956 266 87 46 chrX 51493066 51493127 -111106803 + HAL1 LINE L1 2446 2503 -4 219 114 0 0 chrX 51493466 51493501 -111106429 + (TG)n Simple_repeat Simple_repeat 1 35 0 246 32 0 0 chrX 51495307 51495338 -111104592 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 917 203 74 12 chrX 51495936 51496283 -111103647 + MLT1E2 LTR MaLR 206 592 -1 2422 53 0 10 chrX 51496288 51496648 -111103282 + AluY SINE Alu 1 311 0 316 236 67 0 chrX 51496670 51496759 -111103171 + MIR SINE MIR 147 241 -21 27 29 0 0 chrX 51496996 51497030 -111102900 + AT_rich Low_complexity Low_complexity 1 34 0 207 213 0 21 chrX 51497323 51497370 -111102560 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 4457 128 71 11 chrX 51497372 51498200 -111101730 - Tigger3(Golem) DNA MER2_type -2 3027 2150 886 134 0 42 chrX 51498236 51498378 -111101552 - AluSg/x SINE Alu -9 301 166 477 91 0 0 chrX 51498378 51498444 -111101486 + AluSq/x SINE Alu 66 131 -182 18346 52 5 0 chrX 51498487 51501611 -111098319 + L1PA4 LINE L1 3028 6152 -3 1093 70 0 0 chrX 51501904 51502074 -111097856 + L1PA5 LINE L1 5995 6164 0 2333 164 39 116 chrX 51502115 51502842 -111097088 + LTR8 LTR ERV1 1 671 -20 2593 137 81 19 chrX 51503045 51503623 -111096307 - MER4B LTR ERV1 0 779 1 22 0 0 0 chrX 51504344 51504366 -111095564 + AT_rich Low_complexity Low_complexity 1 22 0 459 285 13 0 chrX 51505194 51505345 -111094585 + L1ME LINE L1 5656 5808 -362 2457 115 93 25 chrX 51505573 51505972 -111093958 + MSTC LTR MaLR 3 428 0 220 303 109 40 chrX 51506826 51507001 -111092929 + L2 LINE L2 2601 2787 -527 326 264 107 0 chrX 51508053 51508180 -111091750 + L1ME LINE L1 5558 5699 -463 207 0 0 0 chrX 51508196 51508219 -111091711 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 362 306 70 16 chrX 51508569 51508755 -111091175 + MIR3 SINE MIR 8 203 -5 22 88 0 0 chrX 51508878 51508935 -111090995 + AT_rich Low_complexity Low_complexity 1 57 0 2223 105 10 10 chrX 51509037 51509343 -111090587 + AluSx SINE Alu 6 311 -1 201 284 11 84 chrX 51509867 51509962 -111089968 - MIR SINE MIR -93 115 28 311 309 50 7 chrX 51510213 51510352 -111089578 + MIR3 SINE MIR 5 149 -59 305 373 49 20 chrX 51510810 51511014 -111088916 - L2 LINE L2 -338 2976 2767 618 204 8 23 chrX 51511914 51512046 -111087884 - FLAM_A SINE Alu 0 133 4 2427 234 79 20 chrX 51512537 51513234 -111086696 + L2 LINE L2 2016 2753 -561 1045 289 50 3 chrX 51513290 51513633 -111086297 + LTR16A LTR ERVL 92 450 0 1440 284 42 35 chrX 51513633 51514187 -111085743 + L2 LINE L2 2749 3313 0 339 238 78 0 chrX 51514369 51514482 -111085448 + MIR SINE MIR 32 154 -61 198 275 0 0 chrX 51514514 51514554 -111085376 + L2 LINE L2 3264 3303 -10 450 133 13 0 chrX 51514803 51514878 -111085052 + AluS SINE Alu 1 76 -234 1761 126 29 0 chrX 51515043 51515348 -111084582 + AluSp SINE Alu 1 313 0 494 277 71 68 chrX 51515500 51515810 -111084120 + L2 LINE L2 2933 3243 -70 246 339 153 0 chrX 51516117 51516306 -111083624 - MIR SINE MIR -11 251 34 315 290 75 31 chrX 51516629 51516786 -111083144 - MER5A DNA MER1_type 0 178 15 839 232 44 0 chrX 51516832 51517013 -111082917 + MER5A DNA MER1_type 1 189 0 3753 108 6 24 chrX 51517690 51518227 -111081703 + MER1A DNA MER1_type 1 527 0 350 246 127 61 chrX 51518383 51518611 -111081319 + MLT1K LTR MaLR 327 569 -19 554 248 79 53 chrX 51519040 51519306 -111080624 + L1MC4a LINE L1 5862 6134 -1674 1882 203 74 28 chrX 51523966 51524734 -111075196 - L1M4 LINE L1 -705 5473 4673 1399 104 0 0 chrX 51524741 51524923 -111075007 - AluSg/x SINE Alu 0 312 131 761 147 88 163 chrX 51524929 51525249 -111074681 - L1M4 LINE L1 -1478 4668 4373 1207 178 44 4 chrX 51525251 51525547 -111074383 + MER21B LTR ERV1 1 339 -524 6895 18 0 2 chrX 51525548 51526757 -111073173 + L1PA3 LINE L1 4836 6042 -113 519 172 57 51 chrX 51526858 51527015 -111072915 - L1M4 LINE L1 -2149 3997 3840 4053 207 66 13 chrX 51527022 51528442 -111071488 - L1MB4 LINE L1 0 6416 4909 198 0 0 0 chrX 51528442 51528464 -111071466 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4053 207 66 13 chrX 51528464 51528594 -111071336 - L1MB4 LINE L1 -1507 4909 4787 1031 218 23 5 chrX 51528589 51528809 -111071121 - L1MB4 LINE L1 -4635 1749 1526 * 2165 239 46 75 chrX 51528829 51529673 -111070257 + L1M3e LINE L1 7 2086 -4944 409 162 22 59 chrX 51529954 51530138 -111069792 - L1MA4 LINE L1 -279 6021 5771 4702 173 38 31 chrX 51530155 51531949 -111067981 - L1PB4 LINE L1 -9 6147 4316 3208 234 25 29 chrX 51531953 51532962 -111066968 - L1PB4 LINE L1 -2542 3604 2600 2221 192 31 6 chrX 51532982 51533472 -111066458 - L1M1 LINE L1 -536 5764 5263 2379 144 8 0 chrX 51533474 51533862 -111066068 - L1PA15 LINE L1 -2 6163 5773 3258 119 9 13 chrX 51533878 51534416 -111065514 - L1MA2 LINE L1 0 7723 7188 921 28 0 0 chrX 51534437 51534546 -111065384 - L1PA3 LINE L1 -3 6152 6044 5030 167 23 10 chrX 51534546 51535773 -111064157 - L1MA2 LINE L1 -540 7184 5974 840 48 0 0 chrX 51535773 51535878 -111064052 + (TA)n Simple_repeat Simple_repeat 1 105 0 261 0 0 0 chrX 51535877 51535906 -111064024 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 5030 167 23 10 chrX 51535878 51535907 -111064023 - L1MA2 LINE L1 -1750 5974 5947 2080 116 0 0 chrX 51535907 51536184 -111063746 - AluSx SINE Alu -35 277 1 5030 167 23 10 chrX 51536184 51536420 -111063510 - L1MA2 LINE L1 -1777 5947 5698 * 5425 118 26 33 chrX 51536417 51537331 -111062599 - L1MA2 LINE L1 -4134 3431 2523 2060 130 7 0 chrX 51537331 51537630 -111062300 - AluSx SINE Alu -11 301 1 5425 118 26 33 chrX 51537630 51537706 -111062224 - L1MA2 LINE L1 -5042 2523 2448 2787 51 3 0 chrX 51537710 51538060 -111061870 - L1PA5 LINE L1 -1 6153 5803 21564 50 50 1 chrX 51538074 51541025 -111058905 - L1PA5 LINE L1 -683 5472 2368 230 218 18 0 chrX 51541029 51541084 -111058846 + MLT1C LTR MaLR 410 465 -2 453 182 31 10 chrX 51541151 51541266 -111058664 - L1M LINE L1 -766 5403 5282 1082 185 15 0 chrX 51541363 51541568 -111058362 - L1PB3 LINE L1 0 6154 5947 415 233 0 0 chrX 51541620 51541706 -111058224 - AluJ/FRAM SINE Alu 0 302 217 3703 163 68 29 chrX 51541732 51543030 -111056900 - L1MA4A LINE L1 -206 6097 4740 315 233 6 12 chrX 51543074 51543237 -111056693 + (TA)n Simple_repeat Simple_repeat 1 162 0 308 267 11 11 chrX 51543249 51543339 -111056591 + L1MC4 LINE L1 6614 6703 -1339 366 267 0 0 chrX 51543348 51543438 -111056492 + L1MC4 LINE L1 6614 6703 -1339 360 289 0 0 chrX 51543370 51543460 -111056470 - L1MC4 LINE L1 -1339 6703 6614 * 519 237 0 0 chrX 51543473 51543899 -111056031 + (TA)n Simple_repeat Simple_repeat 1 426 0 3984 111 3 0 chrX 51543920 51544490 -111055440 - L1PA12 LINE L1 -25 6143 5572 5665 255 88 25 chrX 51544492 51547881 -111052049 - L1PA15-16 LINE L1 -1398 5451 1809 3021 191 12 11 chrX 51547887 51548526 -111051404 - L1P LINE L1 -993 5153 4514 * 20587 172 25 83 chrX 51548524 51550334 -111049596 - L1PA11 LINE L1 -25 6149 4235 13664 63 3 1 chrX 51550334 51552827 -111047103 - L1PA6 LINE L1 -7 6147 3597 20587 172 25 83 chrX 51552827 51553891 -111046039 - L1PA11 LINE L1 -1939 4235 3111 2062 137 0 28 chrX 51553891 51554213 -111045717 - AluSq SINE Alu 0 313 1 20587 172 25 83 chrX 51554213 51557875 -111042055 - L1PA11 LINE L1 -3063 3111 4 1883 259 55 6 chrX 51557870 51558546 -111041384 - L1M2b LINE L1 -3314 3894 3186 * 6576 104 7 2 chrX 51558568 51560291 -111039639 - L1PA7 LINE L1 -8 6461 4726 21180 132 19 30 chrX 51560292 51564876 -111035054 - L1PA7 LINE L1 -1832 4629 1 1943 279 47 80 chrX 51564936 51566307 -111033623 - L1PA15-16 LINE L1 -4068 2135 721 396 0 0 0 chrX 51566307 51566351 -111033579 + (TA)n Simple_repeat Simple_repeat 2 45 0 2114 130 3 0 chrX 51566355 51566655 -111033275 - AluSx SINE Alu 0 312 12 1943 279 47 80 chrX 51566655 51567024 -111032906 - L1PA15-16 LINE L1 -5485 718 355 433 374 44 18 chrX 51567096 51567438 -111032492 - L1PA15-16 LINE L1 -5799 405 55 337 388 20 16 chrX 51567488 51567871 -111032059 - L1M2b LINE L1 -5254 1955 274 1918 169 63 31 chrX 51568076 51568614 -111031316 - MLT2A2 LTR ERVL 0 554 1 16580 122 36 16 chrX 51568614 51571155 -111028775 - HERVL-A2 LTR ERVL 0 5654 3064 10391 117 7 2 chrX 51571154 51572612 -111027318 - HERVL-A2 LTR ERVL -3128 2526 1062 * 330 155 0 0 chrX 51572612 51572670 -111027260 + L1PA7 LINE L1 1582 1639 -4507 * 15829 110 11 2 chrX 51572650 51575333 -111024597 + L1PA7 LINE L1 2767 5475 -679 23431 68 3 2 chrX 51575334 51578541 -111021389 + L1P LINE L1 1 3208 -2938 195 42 0 0 chrX 51578542 51578566 -111021364 + (T)n Simple_repeat Simple_repeat 1 24 0 2367 89 3 0 chrX 51578569 51578894 -111021036 - L1PA3 LINE L1 -3 6467 6142 2881 104 7 0 chrX 51578996 51579418 -111020512 + L1PA7 LINE L1 5717 6141 -13 21798 130 103 15 chrX 51579439 51583004 -111016926 - L1PA3 LINE L1 -679 5790 2540 378 0 0 0 chrX 51583004 51583046 -111016884 + (TG)n Simple_repeat Simple_repeat 2 43 0 2138 109 0 17 chrX 51583046 51583339 -111016591 - AluY SINE Alu -23 288 1 21798 130 103 15 chrX 51583339 51584260 -111015670 - L1PA3 LINE L1 -3929 2540 1701 1904 155 6 28 chrX 51584260 51584577 -111015353 + AluSp SINE Alu 1 310 -3 21798 130 103 15 chrX 51584577 51585395 -111014535 - L1PA3 LINE L1 -4768 1701 4 2150 109 14 0 chrX 51585945 51586238 -111013692 - AluSx SINE Alu -13 299 3 678 263 23 55 chrX 51586936 51587153 -111012777 + MER63A DNA MER1_type 1 210 0 847 117 73 0 chrX 51588335 51588514 -111011416 + L1MA7 LINE L1 6100 6291 0 2179 281 87 22 chrX 51588531 51589311 -111010619 - HERVL40 LTR ERVL -2978 2552 1722 1227 276 66 8 chrX 51589341 51589722 -111010208 - HERVL40 LTR ERVL -3876 1654 1252 407 309 72 11 chrX 51589751 51589932 -111009998 - HERVL40 LTR ERVL -5319 211 20 1209 228 62 16 chrX 51589952 51590465 -111009465 - LTR40a LTR ERVL -4 515 44 3325 173 10 15 chrX 51590493 51591095 -111008835 + MER7C DNA MER2_type 4 602 0 336 321 52 38 chrX 51591316 51591528 -111008402 - L2 LINE L2 -2 3311 3097 326 317 128 50 chrX 51591593 51592070 -111007860 - L1M4 LINE L1 -813 5333 4820 1086 292 18 30 chrX 51592094 51592672 -111007258 + L2 LINE L2 2633 3198 -115 448 249 17 70 chrX 51592756 51592997 -111006933 - MER102a DNA MER1_type -5 325 98 302 222 150 72 chrX 51596973 51597126 -111002804 - HAL1 LINE L1 -2335 172 8 24 32 0 0 chrX 51598167 51598198 -111001732 + AT_rich Low_complexity Low_complexity 1 31 0 2469 274 128 38 chrX 51598490 51599518 -111000412 + L2 LINE L2 1740 2860 -454 312 167 13 51 chrX 51599524 51599602 -111000328 - MER116 DNA Mariner -5 75 1 319 321 20 4 chrX 51599604 51599727 -111000203 + L2 LINE L2 2861 2983 -289 476 291 19 75 chrX 51599819 51600087 -110999843 - MLT1J2 LTR MaLR 0 450 198 1130 214 19 12 chrX 51600119 51600441 -110999489 - MER33 DNA MER1_type 0 324 1 258 345 7 22 chrX 51600450 51600589 -110999341 - MLT1J1 LTR MaLR -272 174 38 487 239 17 34 chrX 51600674 51600850 -110999080 - L1MD3 LINE L1 -915 7080 6908 2281 113 0 0 chrX 51600850 51601150 -110998780 - AluSg SINE Alu -10 300 1 3066 217 99 39 chrX 51601168 51601888 -110998042 - L1MD3 LINE L1 -743 5403 4728 2120 135 0 0 chrX 51601888 51602185 -110997745 - AluSc SINE Alu -12 297 1 3066 217 99 39 chrX 51602185 51602490 -110997440 - L1MD3 LINE L1 -1418 4728 5432 2253 110 3 0 chrX 51602490 51602789 -110997141 - AluSp SINE Alu 0 313 14 3066 217 99 39 chrX 51602789 51603104 -110996826 - L1MD3 LINE L1 -713 5433 5138 5110 131 19 48 chrX 51603139 51604430 -110995500 - L1PB2 LINE L1 0 6151 4885 436 105 11 11 chrX 51604433 51604528 -110995402 + (TA)n Simple_repeat Simple_repeat 2 96 0 1176 32 0 0 chrX 51604529 51604683 -110995247 - L1PA5 LINE L1 -831 5315 5162 6948 47 1 0 chrX 51604683 51605522 -110994408 + L1PA5 LINE L1 5304 6147 -7 4630 205 20 25 chrX 51605748 51607354 -110992576 + L1PA15 LINE L1 3912 5501 -664 1690 213 0 0 chrX 51607354 51607664 -110992266 + AluJb SINE Alu 1 310 -2 4630 205 20 25 chrX 51607664 51608313 -110991617 + L1PA15 LINE L1 5501 6152 -13 14310 209 57 11 chrX 51608332 51613552 -110986378 + L1PA13 LINE L1 1 5468 -1329 209 164 36 0 chrX 51613564 51613619 -110986311 + (TA)n Simple_repeat Simple_repeat 2 58 0 23556 79 8 2 chrX 51613655 51616995 -110982935 - L1P LINE L1 -2559 3587 227 1583 169 90 9 chrX 51716997 51717340 -110882590 + LTR49-int LTR ERV1 4042 4412 -1919 4509 89 8 0 chrX 51717340 51717966 -110881964 - L1PA8 LINE L1 -1 6486 5856 11631 129 8 9 chrX 51717966 51719966 -110879964 - L1PA8 LINE L1 -1080 5381 3385 * 40016 42 22 2 chrX 51719956 51719967 -110879963 - L1PA2 LINE L1 -1 6154 6145 2658 56 6 0 chrX 51719967 51720304 -110879626 - L1PA4 LINE L1 -3 6152 5814 40016 42 22 2 chrX 51720304 51726325 -110873605 - L1PA2 LINE L1 -10 6145 1 39709 60 4 1 chrX 51726333 51732144 -110867786 - L1PA4 LINE L1 -326 5829 1 10958 147 23 49 chrX 51732145 51735101 -110864829 - L1PA8 LINE L1 -3063 3398 427 486 218 0 20 chrX 51735089 51735190 -110864740 - L1PA8 LINE L1 -6357 104 6 * 264 91 23 0 chrX 51735205 51735249 -110864681 - MLT1D LTR MaLR -185 320 276 2456 160 29 12 chrX 51735288 51735775 -110864155 + LTR49-int LTR ERV1 4402 4896 -1435 39 50 0 0 chrX 51735820 51735880 -110864050 + AT_rich Low_complexity Low_complexity 1 60 0 20151 141 10 16 chrX 51735880 51740362 -110859568 - L1PA8A LINE L1 -13 6118 1673 1808 186 14 3 chrX 51740363 51740707 -110859223 - LTR49-int LTR ERV1 -931 5400 5053 741 67 38 0 chrX 51740732 51740837 -110859093 + L1PA4 LINE L1 8 116 -6030 * 32492 43 3 2 chrX 51740821 51745926 -110854004 + L1PA4 LINE L1 1094 6202 0 677 58 0 82 chrX 51746561 51746808 -110853122 + (TA)n Simple_repeat Simple_repeat 1 226 0 802 270 85 23 chrX 51746819 51747453 -110852477 + L1ME3 LINE L1 4468 5186 -960 9710 192 25 43 chrX 51747490 51750842 -110849088 + L1P3 LINE L1 10 3303 -3158 4950 116 7 3 chrX 51750842 51751574 -110848356 + L1PA10 LINE L1 5421 6158 -10 661 190 116 39 chrX 51751588 51751888 -110848042 + L1ME3 LINE L1 5220 5535 -627 356 233 114 86 chrX 51751889 51752099 -110847831 + L1ME3 LINE L1 5611 5826 -336 21 71 0 0 chrX 51753921 51753963 -110845967 + AT_rich Low_complexity Low_complexity 1 42 0 222 313 15 0 chrX 51754723 51754790 -110845140 + MIR3 SINE MIR 125 192 -16 240 206 16 0 chrX 51755949 51756012 -110843918 - Charlie5 DNA MER1_type -29 2583 2520 840 173 19 31 chrX 51756035 51756197 -110843733 - FRAM SINE Alu -6 160 1 736 159 75 53 chrX 51756201 51756428 -110843502 - Charlie5 DNA MER1_type -29 2583 2352 * 1000 148 82 1 chrX 51756426 51756622 -110843308 - Charlie5 DNA MER1_type -2507 105 1 22 0 0 0 chrX 51756718 51756740 -110843190 + AT_rich Low_complexity Low_complexity 1 22 0 224 194 0 0 chrX 51756967 51757003 -110842927 + polypyrimidine Low_complexity Low_complexity 1 36 0 436 308 28 28 chrX 51757132 51757346 -110842584 + L2 LINE L2 2564 2777 -537 23 54 0 0 chrX 51758230 51758267 -110841663 + AT_rich Low_complexity Low_complexity 1 37 0 215 317 98 32 chrX 51759844 51759967 -110839963 - MIR SINE MIR -109 153 23 1311 254 87 29 chrX 51760185 51760843 -110839087 + L1MC5 LINE L1 7187 7882 -79 698 280 11 32 chrX 51760965 51761151 -110838779 - MIR3 SINE MIR -10 198 17 402 261 84 124 chrX 51762877 51763257 -110836673 - L1M2 LINE L1 -5712 1137 773 222 37 0 0 chrX 51763394 51763421 -110836509 + (CCG)n Simple_repeat Simple_repeat 3 29 0 22 0 0 0 chrX 51763487 51763509 -110836421 + GC_rich Low_complexity Low_complexity 1 22 0 326 289 95 72 chrX 51763790 51764053 -110835877 + L1M4 LINE L1 4724 4992 -1154 189 0 0 0 chrX 51764110 51764131 -110835799 + (GCTG)n Simple_repeat Simple_repeat 4 24 0 1055 279 78 66 chrX 51765069 51766278 -110833652 - L1ME3A LINE L1 -31 6139 4889 231 36 0 0 chrX 51766278 51766306 -110833624 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1055 279 78 66 chrX 51766306 51766746 -110833184 - L1ME3A LINE L1 -1281 4889 4456 843 261 32 43 chrX 51766817 51767162 -110832768 - L1ME3A LINE L1 -1796 4350 4010 272 292 120 26 chrX 51767174 51767407 -110832523 - LTR41 LTR ERVL -9 764 510 369 0 0 0 chrX 51767664 51767705 -110832225 + (TG)n Simple_repeat Simple_repeat 1 41 0 539 220 11 94 chrX 51767892 51768083 -110831847 - LTR41 LTR ERVL -595 178 4 298 98 0 196 chrX 51768214 51768306 -110831624 + L1PB4 LINE L1 6076 6149 -7 45 55 0 0 chrX 51771085 51771158 -110828772 + AT_rich Low_complexity Low_complexity 1 73 0 1365 214 119 38 chrX 51771190 51771635 -110828295 - L1ME1 LINE L1 -99 6067 5587 407 183 296 0 chrX 51771635 51771750 -110828180 + LTR52-int LTR ERVL 5327 5475 -55 1556 204 44 72 chrX 51771752 51772230 -110827700 + LTR55 LTR ERV 1 467 -81 1981 109 3 3 chrX 51772230 51772559 -110827371 + AluSx SINE Alu 1 329 0 1556 204 44 72 chrX 51772559 51772622 -110827308 + LTR55 LTR ERV 467 530 -18 354 282 64 61 chrX 51775741 51776069 -110823861 + LTR52-int LTR ERVL 2316 2630 -926 315 0 0 0 chrX 51778600 51778635 -110821295 + (CA)n Simple_repeat Simple_repeat 2 36 0 1349 112 19 0 chrX 51779102 51779317 -110820613 - L1PA16 LINE L1 -3 6163 5945 2267 96 0 20 chrX 51779519 51779821 -110820109 - AluSg SINE Alu -14 296 1 1477 215 14 56 chrX 51781322 51781806 -110818124 + LTR55 LTR ERV 68 531 -17 20715 103 8 2 chrX 51781839 51784222 -110815708 - L1P LINE L1 -1429 4717 2307 276 30 0 0 chrX 51784222 51784255 -110815675 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 20715 103 8 2 chrX 51784255 51785053 -110814877 - L1P LINE L1 -3839 2307 1516 6475 70 12 3 chrX 51785053 51786491 -110813439 + L1PA7 LINE L1 4703 6149 -5 426 114 0 0 chrX 51786691 51786770 -110813160 + (TA)n Simple_repeat Simple_repeat 1 79 0 7511 66 0 22 chrX 51786771 51788574 -110811356 - L1PA5 LINE L1 -5 6149 4369 11345 153 19 21 chrX 51788634 51790775 -110809155 - L1P LINE L1 -4001 2145 11 4241 225 11 8 chrX 51790782 51791163 -110808767 - L1 LINE L1 -2842 3304 2926 2000 113 10 21 chrX 51791163 51791454 -110808476 - AluSg SINE Alu -22 288 1 4241 225 11 8 chrX 51791454 51792200 -110807730 - L1 LINE L1 -3220 2926 2173 * 25896 53 2 3 chrX 51792188 51796430 -110803500 - L1PA4 LINE L1 -1 6154 1918 9646 77 2 0 chrX 51796430 51797763 -110802167 + L1P LINE L1 619 1954 -4192 2216 140 13 10 chrX 51797766 51798234 -110801696 - L1PBa LINE L1 -3953 2909 2383 389 266 8 0 chrX 51798219 51798347 -110801583 - L1P LINE L1 -1606 4540 4412 * 6249 260 25 14 chrX 51798421 51800637 -110799293 - L1P LINE L1 -1752 4394 2154 2105 139 75 48 chrX 51800650 51800835 -110799095 - L1MA2 LINE L1 0 7723 7544 1672 181 10 10 chrX 51800835 51801133 -110798797 + AluSx SINE Alu 1 298 -14 2105 139 75 48 chrX 51801133 51801464 -110798466 - L1MA2 LINE L1 -179 7544 7193 336 247 59 0 chrX 51801474 51801559 -110798371 - MER58A DNA MER1_type -17 90 1 182 94 38 38 chrX 51801572 51801625 -110798305 + T-rich Low_complexity Low_complexity 1 53 0 2149 120 30 14 chrX 51801625 51801992 -110797938 - L1PB2 LINE L1 -3 6148 5776 236 137 20 0 chrX 51802006 51802057 -110797873 + (TA)n Simple_repeat Simple_repeat 1 52 0 631 169 8 0 chrX 51802058 51802176 -110797754 - L1PB2 LINE L1 -363 5788 5670 1133 210 20 8 chrX 51802176 51802437 -110797493 - LTR10B LTR ERV1 0 593 312 1599 208 100 17 chrX 51802465 51802945 -110796985 - LTR10B-int LTR ERV1 -6121 528 9 1147 208 23 8 chrX 51802948 51803207 -110796723 - LTR10B LTR ERV1 -2 545 312 11868 199 19 13 chrX 51803336 51804457 -110795473 - L1P5 LINE L1 -479 6388 5275 1971 126 18 3 chrX 51804457 51804742 -110795188 - AluSc SINE Alu -20 289 1 11868 199 19 13 chrX 51804742 51807393 -110792537 - L1P5 LINE L1 -1592 5275 2519 10343 193 25 26 chrX 51807396 51809271 -110790659 - L1MA2 LINE L1 -527 7196 5321 3559 161 8 21 chrX 51809271 51809891 -110790039 - LTR9 LTR ERV1 0 612 1 10343 193 25 26 chrX 51809891 51809917 -110790013 - L1MA2 LINE L1 -2402 5321 5296 2213 123 0 0 chrX 51809917 51810227 -110789703 + AluY SINE Alu 1 310 -1 10343 193 25 26 chrX 51810227 51810239 -110789691 - L1MA2 LINE L1 -2427 5296 5285 3348 35 0 0 chrX 51810239 51810642 -110789288 + L1PA4 LINE L1 5750 6152 -3 10343 193 25 26 chrX 51810642 51813553 -110786377 - L1MA2 LINE L1 -2438 5285 2373 24109 39 6 0 chrX 52013553 52017309 -110582621 + L1PA3 LINE L1 2373 6152 -3 3762 80 4 9 chrX 52017321 52017849 -110582081 + L1PA8 LINE L1 5641 6165 -7 401 362 85 30 chrX 52018018 52018289 -110581641 + HAL1b LINE L1 339 624 -724 193 109 43 0 chrX 52018341 52018387 -110581543 + (TA)n Simple_repeat Simple_repeat 2 49 0 1883 114 21 0 chrX 52018448 52018737 -110581193 - L1PA13 LINE L1 -2 6161 5867 484 115 81 0 chrX 52018740 52018827 -110581103 - L1PA13 LINE L1 -416 5747 5654 1107 126 0 0 chrX 52018846 52019056 -110580874 + (TA)n Simple_repeat Simple_repeat 1 210 0 7191 234 38 18 chrX 52019056 52020437 -110579493 - L1 LINE L1 -1818 4510 3157 10010 34 0 0 chrX 52020437 52022406 -110577524 - L1PA3 LINE L1 0 6155 4184 7191 234 38 18 chrX 52022406 52023141 -110576789 - L1 LINE L1 -3171 3157 2350 2335 145 11 3 chrX 52023141 52023520 -110576410 - L1PA11 LINE L1 -2 6172 5791 11017 169 19 10 chrX 52023529 52023945 -110575985 - L1PA11 LINE L1 -743 5403 4992 2280 98 0 13 chrX 52023945 52024260 -110575670 - AluY SINE Alu 0 311 1 11017 169 19 10 chrX 52024260 52025986 -110573944 - L1PA11 LINE L1 -1154 4992 3243 1916 181 56 5 chrX 52025969 52026361 -110573569 - L1 LINE L1 -4325 1003 592 * 2093 200 13 40 chrX 52026362 52026811 -110573119 - L1 LINE L1 -4853 475 39 316 230 22 4 chrX 52026804 52026903 -110573027 + L1ME2 LINE L1 5882 5972 -192 * 1152 223 12 0 chrX 52027336 52027583 -110572347 + L1PB4 LINE L1 5903 6152 -4 24 32 0 0 chrX 52027776 52027807 -110572123 + AT_rich Low_complexity Low_complexity 1 31 0 14850 66 2 1 chrX 52028127 52034137 -110565793 - L1PA4 LINE L1 -1 6154 38 1554 321 60 17 chrX 52034506 52035194 -110564736 + L2 LINE L2 1989 2705 -609 330 304 39 61 chrX 52035533 52035714 -110564216 + L2 LINE L2 2317 2493 -821 376 296 91 23 chrX 52035812 52035988 -110563942 - MER5A DNA MER1_type 0 189 2 181 367 102 31 chrX 52036084 52036310 -110563620 - L2 LINE L2 -803 2511 2270 2540 72 0 0 chrX 52036625 52036932 -110562998 - AluY SINE Alu 0 311 5 2313 202 78 64 chrX 52037146 52037869 -110562061 - MER31-int LTR ERV1 -1193 3743 3011 24 0 0 0 chrX 52037869 52037893 -110562037 + AT_rich Low_complexity Low_complexity 1 24 0 2133 200 24 4 chrX 52037935 52038395 -110561535 - L1MA8 LINE L1 -5 7246 6778 12351 184 75 41 chrX 52038408 52039771 -110560159 + L1M1 LINE L1 12 1327 -6238 2169 142 0 0 chrX 52039771 52040081 -110559849 + AluSg SINE Alu 1 310 0 12351 184 75 41 chrX 52040081 52041273 -110558657 + L1M1 LINE L1 1327 2654 -4911 611 184 31 49 chrX 52041341 52041504 -110558426 + L1M2 LINE L1 5319 5478 -813 * 4019 207 129 43 chrX 52041502 52042743 -110557187 - L1MA8 LINE L1 -830 6276 4929 503 256 78 36 chrX 52042712 52043021 -110556909 - L1MA8 LINE L1 -2438 4668 4347 * 2423 277 23 102 chrX 52043026 52044551 -110555379 - L1MA8 LINE L1 -5620 1410 7 1500 241 24 76 chrX 52044579 52044669 -110555261 - L1 LINE L1 -748 5398 5305 306 50 0 0 chrX 52044669 52044709 -110555221 + (TG)n Simple_repeat Simple_repeat 1 40 0 1500 241 24 76 chrX 52044709 52045199 -110554731 - L1 LINE L1 -841 5305 4848 3749 223 26 16 chrX 52045206 52045864 -110554066 + L1MA9 LINE L1 3357 4030 -2116 1717 183 131 11 chrX 52045864 52046246 -110553684 + MSTA LTR MaLR 1 428 0 3749 223 26 16 chrX 52046246 52046547 -110553383 + L1MA9 LINE L1 4030 4326 -1820 346 176 0 14 chrX 52046573 52046647 -110553283 + L1M LINE L1 5306 5378 -925 31113 110 12 14 chrX 52046660 52052919 -110547011 + L1PA7 LINE L1 12 6151 -3 3550 174 41 20 chrX 52052931 52053684 -110546246 + L1PB4 LINE L1 5387 6155 -1 1094 212 30 7 chrX 52053716 52054018 -110545912 + L1MA9 LINE L1 4372 4680 -1466 18032 198 24 20 chrX 52054027 52058633 -110541297 + L1MA2 LINE L1 20 4645 -2920 280 170 0 0 chrX 52058645 52058692 -110541238 - MLT1E3 LTR MaLR -577 47 1 9347 187 30 4 chrX 52058771 52061768 -110538162 + L1MA2 LINE L1 4637 7707 -16 3873 213 48 28 chrX 52061799 52063094 -110536836 + L1MA9 LINE L1 4675 5943 -369 2151 127 0 7 chrX 52063094 52063401 -110536529 + AluSx SINE Alu 3 307 -5 3873 213 48 28 chrX 52063401 52063536 -110536394 + L1MA9 LINE L1 5943 6074 -238 339 78 0 0 chrX 52063536 52063587 -110536343 + (CA)n Simple_repeat Simple_repeat 1 51 0 3873 213 48 28 chrX 52063587 52063722 -110536208 + L1MA9 LINE L1 6074 6274 -38 419 161 35 0 chrX 52063766 52063853 -110536077 + L1MA9 LINE L1 6223 6312 0 21 36 0 0 chrX 52064001 52064029 -110535901 + AT_rich Low_complexity Low_complexity 1 28 0 2532 99 5 29 chrX 52064400 52064783 -110535147 - THE1C LTR MaLR -1 374 1 334 75 0 19 chrX 52064783 52064836 -110535094 - THE1C-int LTR MaLR 0 1580 1529 347 160 0 0 chrX 52065283 52065333 -110534597 - 5S rRNA rRNA -71 50 1 1360 191 0 4 chrX 52065335 52065591 -110534339 + MLT2C2 LTR ERVL 3 257 -207 3244 201 15 99 chrX 52065591 52066445 -110533485 + MLT1A1-int LTR MaLR 954 1735 0 1139 207 50 92 chrX 52066445 52066826 -110533104 + MLT1A1 LTR MaLR 1 365 0 366 249 87 53 chrX 52066872 52067137 -110532793 + HAL1 LINE L1 1757 2030 -477 1933 176 0 3 chrX 52067209 52067522 -110532408 - AluSx SINE Alu 0 312 1 1159 241 5 81 chrX 52067649 52068044 -110531886 + MLT1A1 LTR MaLR 1 365 0 438 290 55 7 chrX 52068112 52068257 -110531673 - MIR SINE MIR -11 251 100 305 274 38 70 chrX 52068323 52068480 -110531450 + HAL1 LINE L1 2333 2484 -23 25 51 0 0 chrX 52068484 52068523 -110531407 + AT_rich Low_complexity Low_complexity 1 39 0 22 70 0 0 chrX 52070147 52070190 -110529740 + AT_rich Low_complexity Low_complexity 1 43 0 577 280 45 34 chrX 52070343 52070611 -110529319 + HAL1 LINE L1 1790 2060 -447 582 238 18 24 chrX 52070665 52070829 -110529101 - LTR52 LTR ERVL -258 163 1 583 252 0 0 chrX 52070829 52070952 -110528978 - LTR52-int LTR ERVL 0 3556 3434 * 629 231 0 0 chrX 52070944 52071061 -110528869 - LTR52-int LTR ERVL -52 3504 3388 38 0 0 0 chrX 52071129 52071167 -110528763 + AT_rich Low_complexity Low_complexity 1 38 0 1222 186 9 0 chrX 52071167 52071398 -110528532 - L1PB3 LINE L1 -5 6149 5917 2290 162 0 25 chrX 52071417 52071812 -110528118 + MER57B LTR ERV1 46 430 -4 650 261 27 42 chrX 52071832 52072095 -110527835 + MER57B-int LTR ERV1 3 299 -7238 9579 62 5 0 chrX 52072130 52074145 -110525785 - L1PA6 LINE L1 -3 6151 4132 279 200 64 91 chrX 52074201 52074311 -110525619 + MER57B-int LTR ERV1 813 919 -867 389 314 11 25 chrX 52076174 52076499 -110523431 + MER57-int LTR ERV1 158 3478 -4278 279 388 26 7 chrX 52076483 52076635 -110523295 + MER57-int LTR ERV1 2544 2698 -4103 * 311 351 0 0 chrX 52077727 52077821 -110522109 + MER57-int LTR ERV1 3784 3877 -2924 1735 238 2 53 chrX 52077915 52078406 -110521524 + MER57-int LTR ERV1 5285 5750 -1787 1021 274 43 63 chrX 52078377 52079268 -110520662 + MER57-int LTR ERV1 2097 6176 -1361 * 22 0 0 0 chrX 52079605 52079627 -110520303 + AT_rich Low_complexity Low_complexity 1 22 0 6916 68 12 2 chrX 52080474 52082075 -110517855 - L1PA6 LINE L1 0 6154 4548 2423 154 19 42 chrX 52082311 52082910 -110517020 - MER4E LTR ERV1 -9 757 1 12469 132 50 14 chrX 52082910 52084979 -110514951 - MER4E-int LTR ERV1 0 6758 4616 1935 178 11 0 chrX 52084980 52085329 -110514601 - MER4E-int LTR ERV1 -2982 3776 3424 * 3128 136 63 68 chrX 52085301 52085705 -110514225 - MER4E-int LTR ERV1 -3649 3109 2709 1869 132 21 3 chrX 52085705 52085994 -110513936 + AluSq SINE Alu 4 297 -16 3128 136 63 68 chrX 52085994 52086304 -110513626 - MER4E-int LTR ERV1 -4049 2709 2399 2494 88 0 0 chrX 52086306 52086647 -110513283 + L1PA7 LINE L1 3854 4194 -1952 382 59 0 0 chrX 52086644 52086695 -110513235 - L1PA6 LINE L1 -1064 5082 5032 * 6951 59 7 0 chrX 52086697 52087748 -110512182 + L1PA6 LINE L1 5086 6141 -13 420 105 0 0 chrX 52087803 52087860 -110512070 + L1PA8A LINE L1 6062 6118 -13 8565 90 38 0 chrX 52087866 52089803 -110510127 + L1PA7 LINE L1 4181 6151 -3 566 64 36 45 chrX 52089803 52089906 -110510024 - MER4B-int LTR ERV1 -4373 2385 2282 1952 162 0 10 chrX 52089906 52090215 -110509715 - AluSx SINE Alu -6 306 1 7320 161 23 7 chrX 52090215 52092594 -110507336 + L1MA2 LINE L1 3890 6304 0 270 278 35 52 chrX 52092632 52092805 -110507125 + HAL1 LINE L1 2212 2381 -126 582 152 0 10 chrX 52093003 52093102 -110506828 + MER4A LTR ERV1 1 98 -566 1754 140 21 20 chrX 52093111 52093447 -110506483 + MER4A LTR ERV1 270 664 0 341 287 10 30 chrX 52093538 52093639 -110506291 - L2 LINE L2 -272 3041 2943 321 325 50 19 chrX 52093685 52093845 -110506085 + MIR SINE MIR 8 172 -90 603 153 22 38 chrX 52094296 52094440 -110505490 + MER51C LTR ERV1 1 183 -457 4277 129 8 0 chrX 52094448 52095083 -110504847 + MER51C LTR ERV1 1 640 0 21 57 0 0 chrX 52095197 52095232 -110504698 + AT_rich Low_complexity Low_complexity 1 35 0 4308 234 36 5 chrX 52095994 52096926 -110503004 - MLT1A1-int LTR MaLR -774 961 1 1647 238 29 0 chrX 52096933 52097278 -110502652 - MLT1A1 LTR MaLR -8 357 3 3027 239 74 37 chrX 52098328 52098976 -110500954 - L1MB4 LINE L1 0 6180 5558 2366 80 0 6 chrX 52098976 52099289 -110500641 - AluY SINE Alu 0 311 1 3027 239 74 37 chrX 52099289 52100136 -110499794 - L1MB4 LINE L1 -622 5558 4744 2489 68 0 0 chrX 52100136 52100432 -110499498 - AluY SINE Alu -15 296 1 3027 239 74 37 chrX 52100432 52100584 -110499346 - L1MB4 LINE L1 -1436 4744 4599 1278 246 21 21 chrX 52100584 52100873 -110499057 + AluJb SINE Alu 1 289 -23 3027 239 74 37 chrX 52100873 52100929 -110499001 - L1MB4 LINE L1 -1581 4599 4409 3203 244 25 31 chrX 52100947 52101327 -110498603 + L1 LINE L1 1609 1989 -4157 2074 133 3 0 chrX 52101327 52101613 -110498317 + AluSx SINE Alu 9 295 -17 3203 244 25 31 chrX 52101613 52102789 -110497141 + L1 LINE L1 1989 3147 -2999 5775 16 8 0 chrX 52102791 52103501 -110496429 + L1PA4 LINE L1 5477 6191 0 3109 205 30 30 chrX 52103668 52104736 -110495194 + L1 LINE L1 3152 4958 -1188 519 122 89 0 chrX 52104739 52104829 -110495101 + MER4A LTR ERV1 1 98 -566 444 155 27 142 chrX 52104829 52105016 -110494914 + MER4A LTR ERV1 261 484 -180 2615 104 3 0 chrX 52105016 52105370 -110494560 + THE1A LTR MaLR 1 355 0 6548 116 17 0 chrX 52105370 52106318 -110493612 + THE1A-int LTR MaLR 1 964 -616 2358 183 52 35 chrX 52106318 52106916 -110493014 - MER4B LTR ERV1 0 779 3 725 102 8 8 chrX 52106916 52107034 -110492896 - L1PA14 LINE L1 -326 5835 5718 * 1280 166 20 4 chrX 52107029 52107276 -110492654 + L1PA14 LINE L1 5455 5705 -451 239 179 0 0 chrX 52107278 52107317 -110492613 - LTR9B LTR ERV1 0 644 606 2328 108 61 0 chrX 52107331 52107693 -110492237 - L1PA5 LINE L1 -1 6153 5770 35838 48 4 0 chrX 52107693 52113204 -110486726 - L1PA4 LINE L1 -2 6153 623 697 102 0 0 chrX 52113202 52113300 -110486630 - L1PA4 LINE L1 -6048 98 1 * 34244 97 6 31 chrX 52113302 52119225 -110480705 - L1PA5 LINE L1 -374 5780 15 2336 216 68 7 chrX 52119226 52119804 -110480126 - LTR9B LTR ERV1 -25 619 7 1092 197 28 22 chrX 52119812 52120071 -110479859 - HUERS-P3 LTR ERV1 -3 8915 6828 543 220 46 12 chrX 52120372 52120545 -110479385 - HUERS-P3 LTR ERV1 -2453 2562 2384 484 200 0 9 chrX 52120540 52120650 -110479280 - HUERS-P3 LTR ERV1 -1937 6982 6874 * 3769 198 15 4 chrX 52120661 52121404 -110478526 - HUERS-P3 LTR ERV1 -2007 6912 6162 * 3967 129 5 2 chrX 52121389 52121995 -110477935 - HUERS-P3 LTR ERV1 -3342 5577 4970 652 252 7 0 chrX 52122036 52122179 -110477751 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 9183 156 3 4 chrX 52122172 52123667 -110476263 - HUERS-P3 LTR ERV1 -5635 3284 1791 3983 157 58 88 chrX 52123664 52124603 -110475327 - HUERS-P3 LTR ERV1 -7267 1652 743 * 1597 231 27 40 chrX 52124623 52125069 -110474861 - HUERS-P3 LTR ERV1 -6859 559 120 207 0 0 0 chrX 52125069 52125092 -110474838 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 453 164 67 10 chrX 52125195 52125299 -110474631 - HUERS-P3 LTR ERV1 -8809 110 1 2660 193 68 7 chrX 52125299 52125900 -110474030 - LTR9B LTR ERV1 0 644 7 1457 217 41 36 chrX 52125907 52126350 -110473580 + L1PB4 LINE L1 5705 6149 -7 23 54 0 0 chrX 52126360 52126397 -110473533 + AT_rich Low_complexity Low_complexity 1 37 0 778 185 19 19 chrX 52126406 52126563 -110473367 + MLT1A1 LTR MaLR 208 364 -1 22090 50 4 1 chrX 52126606 52130211 -110469719 - L1PA5 LINE L1 0 6154 2543 4663 62 0 11 chrX 52130211 52130837 -110469093 + L1P LINE L1 184 802 -5344 210 71 0 0 chrX 52130850 52130878 -110469052 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1747 188 3 11 chrX 52130881 52131168 -110468762 - AluSx SINE Alu -27 285 1 397 154 99 11 chrX 52131168 52131259 -110468671 + Ricksha DNA DNA 3133 3231 -20 480 140 0 0 chrX 52131271 52131355 -110468575 + L1MA10 LINE L1 5702 5783 -385 1360 197 0 67 chrX 52131361 52131737 -110468193 + MER46B DNA MER2_type 11 236 0 306 0 0 0 chrX 52131740 52131774 -110468156 + (CA)n Simple_repeat Simple_repeat 2 35 0 242 256 51 0 chrX 52131774 52131852 -110468078 - L1MC4 LINE L1 -1341 6701 6620 * 262 259 49 0 chrX 52131784 52131865 -110468065 + L1MC4 LINE L1 6614 6698 -1344 * 1788 216 32 50 chrX 52131854 52132418 -110467512 + L1MA10 LINE L1 5781 6334 0 21 57 0 0 chrX 52132772 52132807 -110467123 + AT_rich Low_complexity Low_complexity 1 35 0 750 180 85 117 chrX 52133490 52133806 -110466124 - LTR1B LTR ERV1 -384 442 137 28 29 0 0 chrX 52134084 52134119 -110465811 + AT_rich Low_complexity Low_complexity 1 35 0 3189 34 3 0 chrX 52134393 52134777 -110465153 - L1PA4 LINE L1 0 6155 5771 * 6421 79 19 0 chrX 52134774 52136088 -110463842 + L1PA6 LINE L1 4822 6154 0 645 189 8 0 chrX 52136345 52136477 -110463453 + LTR1 LTR ERV1 1 133 -652 3823 19 2 2 chrX 52136477 52136950 -110462980 - L1P2 LINE L1 -401 5754 5282 14508 111 12 10 chrX 52136954 52139196 -110460734 - HERV9 LTR ERV1 -6114 2285 40 737 156 25 0 chrX 52139207 52139329 -110460601 - LTR12 LTR ERV1 -231 483 359 293 222 0 0 chrX 52139329 52139401 -110460529 - LTR30 LTR ERV1 -98 624 553 1696 144 7 7 chrX 52139402 52139687 -110460243 - LTR12 LTR ERV1 -429 285 1 3079 251 30 16 chrX 52139687 52141205 -110458725 + L1M3f LINE L1 542 2085 -4074 5288 148 38 0 chrX 52141234 52142246 -110457684 - L1PA15 LINE L1 -7 7577 6535 237 65 0 0 chrX 52142246 52142277 -110457653 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5288 148 38 0 chrX 52142277 52142409 -110457521 - L1PA15 LINE L1 -1049 6535 6409 1896 158 26 20 chrX 52142409 52142925 -110457005 + MLT2A2 LTR ERVL 6 554 0 717 194 88 19 chrX 52142927 52143143 -110456787 - L1PA15 LINE L1 -1149 6416 6186 6330 125 31 9 chrX 52143193 52143261 -110456669 - L1PA15 LINE L1 -3984 3581 3516 303 28 0 0 chrX 52143261 52143297 -110456633 + (TG)n Simple_repeat Simple_repeat 2 37 0 6330 125 31 9 chrX 52143297 52144433 -110455497 - L1PA15 LINE L1 -4049 3516 2350 27674 129 12 61 chrX 52144442 52150557 -110449373 + L1P3 LINE L1 12 5819 -335 509 280 8 0 chrX 52150544 52150676 -110449254 + L1M1 LINE L1 1427 1559 -6006 * 2435 62 9 3 chrX 52150693 52151013 -110448917 + L1PA7 LINE L1 5829 6150 -4 10429 208 35 15 chrX 52151013 52153311 -110446619 - L1M1 LINE L1 -5209 2356 12 9358 239 29 32 chrX 52153301 52153861 -110446069 - L1PA13 LINE L1 -3752 3045 2485 * 6388 22 0 0 chrX 52153861 52154555 -110445375 + L1PA2 LINE L1 5461 6154 -1 9358 239 29 32 chrX 52154555 52156966 -110442964 - L1PA13 LINE L1 -4312 2485 96 349 187 77 0 chrX 52156969 52157060 -110442870 + L1M1 LINE L1 3344 3441 -4124 2933 210 19 16 chrX 52157061 52157504 -110442426 + L1 LINE L1 4073 4520 -1626 2216 128 0 0 chrX 52157504 52157808 -110442122 + AluSg SINE Alu 1 304 -6 2933 210 19 16 chrX 52157808 52158035 -110441895 + L1 LINE L1 4520 4745 -1401 29639 114 11 10 chrX 52158037 52162291 -110437639 + L1PA7 LINE L1 702 4987 -1482 270 0 0 0 chrX 52162291 52162321 -110437609 + (CA)n Simple_repeat Simple_repeat 1 30 0 29639 114 11 10 chrX 52162321 52163799 -110436131 + L1PA7 LINE L1 4987 6463 -6 4782 180 36 12 chrX 52163800 52164123 -110435807 + L1PA16 LINE L1 4737 5051 -1115 2224 40 0 0 chrX 52164123 52164374 -110435556 + L1PA4 LINE L1 5901 6151 -4 4782 180 36 12 chrX 52164374 52165438 -110434492 + L1PA16 LINE L1 5051 6155 -11 1228 183 44 44 chrX 52165442 52165846 -110434084 + L1M1 LINE L1 3466 3869 -3696 19481 97 16 2 chrX 52165850 52168531 -110431399 + L1P LINE L1 3 2720 -3426 7071 167 17 10 chrX 52168640 52169978 -110429952 - L1 LINE L1 -909 5237 3890 1964 162 0 10 chrX 52169978 52170287 -110429643 + AluSx SINE Alu 1 306 -6 582 70 40 30 chrX 52170287 52170387 -110429543 + MER4B-int LTR ERV1 2282 2382 -4376 30108 115 14 9 chrX 52170387 52171841 -110428089 - L1PA7 LINE L1 0 6469 5024 270 0 0 0 chrX 52171841 52171871 -110428059 + (TG)n Simple_repeat Simple_repeat 1 30 0 30108 115 14 9 chrX 52171871 52176125 -110423805 - L1PA7 LINE L1 -1445 5024 702 2933 210 19 16 chrX 52176127 52176354 -110423576 - L1 LINE L1 -1401 6164 5939 2216 128 0 0 chrX 52176354 52176658 -110423272 - AluSg SINE Alu -6 304 1 2933 210 19 16 chrX 52176658 52177101 -110422829 - L1 LINE L1 -1626 5939 5492 349 187 77 0 chrX 52177102 52177193 -110422737 - L1 LINE L1 -4124 3441 3344 9358 239 26 38 chrX 52177196 52179607 -110420323 + L1PA13 LINE L1 96 2491 -4306 1350 52 11 11 chrX 52179607 52179781 -110420149 - L1PA2 LINE L1 -1 6154 5981 17645 58 1 1 chrX 52179886 52182781 -110417149 + L1PA5 LINE L1 3258 6154 0 3068 195 60 8 chrX 52182783 52183649 -110416281 - L1P LINE L1 -795 6789 5803 * 6362 228 25 19 chrX 52183645 52186301 -110413629 - L1PA12 LINE L1 -4360 3224 1 4578 262 30 9 chrX 52186302 52187722 -110412208 + L1 LINE L1 3035 4483 -1663 954 215 8 16 chrX 52187826 52188072 -110411858 + L1P LINE L1 5032 5275 -871 3090 296 33 16 chrX 52188083 52189237 -110410693 + L1PBa LINE L1 3 1175 -5688 3257 116 5 0 chrX 52189239 52189686 -110410244 + HERVK22 LTR ERVK 4869 5317 -1520 2643 108 15 18 chrX 52189686 52190075 -110409855 + LTR15 LTR ERV1 1 388 -105 1216 89 0 0 chrX 52190198 52190355 -110409575 + HERVK22 LTR ERVK 5314 5470 -1367 * 6805 116 11 10 chrX 52190354 52191324 -110408606 + HERVK22 LTR ERVK 5859 6829 -8 649 210 5 37 chrX 52191324 52191336 -110408594 + L1MA4 LINE L1 5539 5550 -616 2777 164 29 31 chrX 52191336 52191825 -110408105 + LTR22B LTR ERVK 5 492 0 649 210 5 37 chrX 52191825 52191963 -110407967 + L1MA4 LINE L1 5550 5680 -486 5005 179 42 7 chrX 52191963 52193633 -110406297 + L1PA16 LINE L1 4438 6164 -2 2975 170 48 10 chrX 52193636 52194235 -110405695 + L1MA4 LINE L1 5677 6298 -2 732 137 15 23 chrX 52194383 52194514 -110405416 + L1MA4 LINE L1 6165 6294 -6 5519 277 105 29 chrX 52194517 52196763 -110403167 + L1M2 LINE L1 7 2423 -4426 2166 191 76 2 chrX 52196763 52197160 -110402770 - MSTB LTR MaLR 0 426 1 8754 180 52 9 chrX 52197161 52198742 -110401188 - MSTB-int LTR MaLR -1 1650 1 2377 177 49 2 chrX 52198742 52199149 -110400781 - MSTB LTR MaLR 0 426 1 4280 241 47 20 chrX 52199149 52200741 -110399189 + L1M2 LINE L1 2419 3966 -2882 2041 150 56 19 chrX 52200741 52201100 -110398830 - THE1C LTR MaLR 0 375 4 10447 107 41 60 chrX 52201103 52202712 -110397218 - THE1C-int LTR MaLR 0 1580 2 2525 102 30 21 chrX 52202713 52203085 -110396845 - THE1C LTR MaLR 0 375 1 4280 241 47 20 chrX 52203085 52203955 -110395975 + L1M2 LINE L1 3966 4947 -1901 1292 308 37 14 chrX 52203965 52204393 -110395537 + L1PB4 LINE L1 11 448 -6401 333 293 64 76 chrX 52204468 52204625 -110395305 + L1PB4 LINE L1 646 800 -6049 13220 213 35 19 chrX 52205246 52208019 -110391911 + L1PB4 LINE L1 1067 3793 -3065 243 0 0 0 chrX 52208019 52208046 -110391884 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 13220 213 35 19 chrX 52208046 52210759 -110389171 + L1PB4 LINE L1 3793 6629 -229 375 210 62 0 chrX 52210759 52210840 -110389090 + L1ME3A LINE L1 5523 5608 -562 273 250 60 0 chrX 52210866 52210950 -110388980 + L1ME3A LINE L1 5693 5781 -381 911 187 0 22 chrX 52210969 52211151 -110388779 + AluJo SINE Alu 115 292 -20 381 221 165 0 chrX 52211152 52211279 -110388651 + L1ME3A LINE L1 5816 5963 -207 2178 200 68 0 chrX 52211279 52211748 -110388182 + L1MB7 LINE L1 5667 6167 -17 367 251 118 20 chrX 52211786 52211989 -110387941 + L1ME3A LINE L1 5948 6170 0 22 0 0 0 chrX 52212155 52212177 -110387753 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 52213312 52213339 -110386591 + AT_rich Low_complexity Low_complexity 1 27 0 723 141 92 7 chrX 52213797 52213939 -110385991 - L1MA8 LINE L1 -3 6288 6135 199 156 0 0 chrX 52214825 52214857 -110385073 + L2 LINE L2 3261 3292 -21 352 367 67 32 chrX 52215851 52216252 -110383678 + L2 LINE L2 2443 2857 -457 2205 129 100 6 chrX 52216743 52217184 -110382746 - MER1A DNA MER1_type -4 525 1 569 98 49 0 chrX 52217250 52217393 -110382537 + (TA)n Simple_repeat Simple_repeat 1 150 0 297 0 0 0 chrX 52219053 52219086 -110380844 + (CA)n Simple_repeat Simple_repeat 2 34 0 181 176 118 20 chrX 52219157 52219208 -110380722 + MIR SINE MIR 156 211 -51 301 224 15 0 chrX 52219718 52219785 -110380145 - MIR SINE MIR -109 153 86 198 0 0 0 chrX 52220123 52220145 -110379785 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 620 268 6 42 chrX 52220146 52220314 -110379616 - MIR3 SINE MIR -30 178 17 321 254 72 118 chrX 52222045 52222450 -110377480 - L1M2 LINE L1 -5468 1381 996 22 0 0 0 chrX 52222638 52222660 -110377270 + GC_rich Low_complexity Low_complexity 1 22 0 263 270 112 73 chrX 52222941 52223200 -110376730 + L1M4 LINE L1 4724 4992 -1154 1674 272 98 65 chrX 52224215 52226278 -110373652 - L1ME3A LINE L1 -34 6136 4010 388 230 184 100 chrX 52226290 52226529 -110373401 - LTR41 LTR ERVL -9 764 506 369 0 0 0 chrX 52226779 52226820 -110373110 + (TG)n Simple_repeat Simple_repeat 1 41 0 576 220 32 75 chrX 52227011 52227197 -110372733 - LTR41 LTR ERVL -592 181 4 421 184 0 0 chrX 52227329 52227405 -110372525 + L1PB4 LINE L1 6076 6151 -5 43 56 0 0 chrX 52230188 52230259 -110369671 + AT_rich Low_complexity Low_complexity 1 71 0 1504 221 123 31 chrX 52230277 52230733 -110369197 - L1ME1 LINE L1 -82 6084 5587 333 250 0 0 chrX 52230789 52230857 -110369073 + HERVL40 LTR ERVL 5408 5475 -55 1730 202 46 65 chrX 52230859 52231337 -110368593 + LTR55 LTR ERV 1 469 -79 2092 108 0 26 chrX 52231337 52231642 -110368288 + AluSx SINE Alu 1 297 -15 1730 202 46 65 chrX 52231642 52231703 -110368227 + LTR55 LTR ERV 469 530 -18 301 339 8 8 chrX 52234455 52234573 -110365357 + HERVL40 LTR ERVL 1837 1954 -3731 3947 128 7 11 chrX 52234848 52235456 -110364474 + HERVE LTR ERV1 2644 3353 -4299 1209 148 0 0 chrX 52235456 52235645 -110364285 - HERVE LTR ERV1 -2156 5657 5469 1172 113 6 0 chrX 52235632 52235792 -110364138 - HERVE LTR ERV1 -2656 5157 4997 * 879 266 44 39 chrX 52236110 52236448 -110363482 + HERVL40 LTR ERVL 2476 2815 -741 198 0 0 0 chrX 52238835 52238857 -110361073 + (CA)n Simple_repeat Simple_repeat 1 22 0 1508 93 23 5 chrX 52239315 52239530 -110360400 - L1PA16 LINE L1 -3 6163 5945 2223 91 3 36 chrX 52239732 52240041 -110359889 - AluSg SINE Alu -11 299 1 1668 209 17 50 chrX 52241533 52242012 -110357918 + LTR55 LTR ERV 69 531 -17 678 219 12 26 chrX 52242161 52242364 -110357566 + LTR40b LTR ERVL 288 462 0 759 276 107 71 chrX 52242642 52243052 -110356878 + HERVL40 LTR ERVL 963 1387 -4143 483 311 25 41 chrX 52243364 52243608 -110356322 + HERVL40 LTR ERVL 1378 1617 -3913 * 1182 260 26 40 chrX 52243607 52243957 -110355973 + HERVL40 LTR ERVL 2050 2394 -3136 1379 279 15 0 chrX 52243958 52244295 -110355635 + HERVL40 LTR ERVL 2562 2903 -2627 2532 251 65 16 chrX 52247234 52248423 -110351507 + HERVL40 LTR ERVL 2898 4290 -1240 21 0 0 0 chrX 52248427 52248448 -110351482 + AT_rich Low_complexity Low_complexity 1 21 0 2586 153 27 6 chrX 52248455 52248931 -110350999 - L1MA6 LINE L1 0 6300 5815 182 36 0 36 chrX 52248932 52248960 -110350970 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7216 27 2 0 chrX 52249044 52249901 -110350029 - L1PA3 LINE L1 0 6155 5297 3394 198 62 28 chrX 52249883 52250177 -110349753 - L1MA6 LINE L1 -469 5831 5549 * 2034 136 10 3 chrX 52250177 52250486 -110349444 - AluSx SINE Alu -1 311 1 3394 198 62 28 chrX 52250486 52251338 -110348592 - L1MA6 LINE L1 -751 5549 4645 709 64 16 58 chrX 52251340 52251528 -110348402 + (TA)n Simple_repeat Simple_repeat 1 180 0 308 110 49 43 chrX 52251490 52251653 -110348277 + (TATAA)n Simple_repeat Simple_repeat 5 168 0 * 45 19 0 0 chrX 52251655 52251707 -110348223 + AT_rich Low_complexity Low_complexity 1 52 0 3067 165 19 32 chrX 52251707 52252338 -110347592 - L1MA6 LINE L1 -1514 4632 4010 14121 191 27 47 chrX 52252368 52252438 -110347492 - L1PA15 LINE L1 -9 7594 7524 11642 36 3 0 chrX 52252438 52254611 -110345319 - L1PA4 LINE L1 -5 6150 3973 14121 191 27 47 chrX 52254611 52255701 -110344229 - L1PA15 LINE L1 -79 7524 6414 823 110 0 0 chrX 52255701 52255851 -110344079 - AluSc SINE Alu 0 322 173 14121 191 27 47 chrX 52255851 52258897 -110341033 - L1PA15 LINE L1 -1189 6414 3356 2149 114 0 3 chrX 52258897 52259203 -110340727 + AluY SINE Alu 5 309 -2 14121 191 27 47 chrX 52259203 52259264 -110340666 - L1PA15 LINE L1 -4247 3356 3295 * 15098 48 6 1 chrX 52259251 52261166 -110338764 - L1PA5 LINE L1 -1013 5133 3209 7146 59 0 0 chrX 52261166 52262191 -110337739 + L1PA5 LINE L1 5128 6152 -2 3960 196 16 11 chrX 52262200 52263169 -110336761 - L1PA15 LINE L1 -4275 3309 2319 301 333 53 35 chrX 52265007 52265423 -110334507 - L1PA15 LINE L1 -6571 1014 2 * 2737 243 63 13 chrX 52265420 52265845 -110334085 - L1 LINE L1 -2122 5443 5041 20010 45 3 2 chrX 52265845 52269169 -110330761 + L1PA4 LINE L1 2781 6155 0 2737 243 63 13 chrX 52269169 52269682 -110330248 - L1 LINE L1 -2524 5041 4458 4347 249 49 36 chrX 52269696 52271746 -110328184 - L1 LINE L1 -3573 3992 1897 3771 172 25 0 chrX 52271864 52272572 -110327358 + L1MA5 LINE L1 5573 6298 -2 1036 328 17 37 chrX 52272675 52273136 -110326794 - L1 LINE L1 -5503 1983 1532 268 164 14 55 chrX 52273728 52273801 -110326129 - L1MB8 LINE L1 0 6414 6345 506 68 68 0 chrX 52273801 52273875 -110326055 - AluY SINE Alu -18 293 215 2715 213 54 36 chrX 52273902 52275088 -110324842 - L1MB8 LINE L1 -315 6099 4863 1908 156 0 3 chrX 52275088 52275393 -110324537 + AluSx SINE Alu 1 304 0 2715 213 54 36 chrX 52275393 52275669 -110324261 - L1MB8 LINE L1 -1551 4863 4593 3071 149 66 6 chrX 52275675 52276193 -110323737 - MER41B LTR ERV1 -86 549 1 4852 106 42 34 chrX 52276193 52277694 -110322236 - MER41B-int LTR ERV1 0 6129 4491 3708 158 36 2 chrX 52277706 52278320 -110321610 - MER41B-int LTR ERV1 -5311 635 1 863 153 40 7 chrX 52278320 52278470 -110321460 - MER41B LTR ERV1 0 635 481 1131 221 54 73 chrX 52278470 52278896 -110321034 - L1MB8 LINE L1 -1778 4604 4187 * 5529 130 26 11 chrX 52278891 52279989 -110319941 - L1PA13 LINE L1 -4 6159 5045 737 284 86 3 chrX 52279971 52280263 -110319667 - L1MB8 LINE L1 -2201 4181 3866 * 1169 258 36 17 chrX 52280322 52280798 -110319132 - L1MB8 LINE L1 -3447 2935 2451 296 254 92 0 chrX 52280851 52280993 -110318937 - L1MB8 LINE L1 -3931 2453 2299 4377 157 66 3 chrX 52281001 52281936 -110317994 - L1MA4A LINE L1 -5 7717 6716 * 6696 201 39 16 chrX 52281918 52283451 -110316479 - L1PA15 LINE L1 -2 6163 4549 1863 144 10 10 chrX 52283451 52283750 -110316180 - AluSx SINE Alu -13 299 1 6696 201 39 16 chrX 52283750 52284782 -110315148 - L1PA15 LINE L1 -1616 4549 3542 4886 221 30 23 chrX 52284783 52286264 -110313666 - L1MA4A LINE L1 -815 6750 5260 3440 144 13 57 chrX 52286275 52286891 -110313039 - LTR8 LTR ERV1 -102 589 1 2614 200 8 22 chrX 52286891 52287425 -110312505 - HUERS-P1 LTR ERV1 0 6263 5738 1081 112 66 25 chrX 52287420 52287617 -110312313 - HUERS-P1 LTR ERV1 -751 5195 4991 * 1277 140 7 102 chrX 52287617 52287910 -110312020 - HUERS-P1 LTR ERV1 -998 5265 5001 275 282 32 0 chrX 52287933 52288057 -110311873 - L1MA4A LINE L1 -4564 3001 2874 2124 107 13 3 chrX 52288236 52288535 -110311395 + AluSq SINE Alu 1 302 -11 230 0 33 0 chrX 52288653 52288683 -110311247 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1396 262 45 27 chrX 52288992 52289481 -110310449 + MLT1D LTR MaLR 1 498 -7 2158 111 6 16 chrX 52289820 52290135 -110309795 - AluSx SINE Alu 0 312 1 2058 173 47 12 chrX 52290854 52291276 -110308654 - HUERS-P1 LTR ERV1 -1580 4366 3930 1674 199 0 30 chrX 52291293 52291595 -110308335 - HUERS-P1 LTR ERV1 -5970 293 1 903 148 7 0 chrX 52291595 52291737 -110308193 - LTR8 LTR ERV1 0 691 549 421 229 9 0 chrX 52291738 52291843 -110308087 - L1 LINE L1 -2299 3847 3742 27 0 0 0 chrX 52291997 52292024 -110307906 + AT_rich Low_complexity Low_complexity 1 27 0 21350 47 1 2 chrX 52292024 52295616 -110304314 - L1PA4 LINE L1 -3 6152 2562 2807 196 48 64 chrX 52295650 52296495 -110303435 - L1 LINE L1 -1980 5187 4361 2169 99 10 0 chrX 52296495 52296787 -110303143 - AluY SINE Alu -15 296 2 2807 196 48 64 chrX 52296787 52297004 -110302926 - L1 LINE L1 -2806 4361 4142 233 317 0 0 chrX 52298370 52298430 -110301500 + (CCCCAG)n Simple_repeat Simple_repeat 5 64 0 775 101 34 34 chrX 52298729 52298908 -110301022 + CT-rich Low_complexity Low_complexity 1 179 0 1490 275 46 3 chrX 52298948 52299518 -110300412 - L1 LINE L1 -3022 4145 3552 1227 187 5 5 chrX 52299518 52299732 -110300198 - AluJb SINE Alu -12 300 87 5953 242 24 28 chrX 52299753 52301549 -110298381 - L1 LINE L1 -3630 3537 1735 213 39 0 0 chrX 52301549 52301575 -110298355 + (CAG)n Simple_repeat Simple_repeat 2 27 0 5953 242 24 28 chrX 52301575 52301658 -110298272 - L1 LINE L1 -5432 1735 1653 4621 152 51 167 chrX 52301658 52303103 -110296827 + MER52C LTR ERV1 1 1278 0 5953 242 24 28 chrX 52303103 52304057 -110295873 - L1 LINE L1 -5514 1653 709 705 261 6 11 chrX 52304058 52304234 -110295696 - L1 LINE L1 -6329 839 665 390 283 42 42 chrX 52304254 52304420 -110295510 - L1 LINE L1 -6352 816 651 214 137 0 39 chrX 52304466 52304517 -110295413 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 4021 194 43 49 chrX 52304569 52304745 -110295185 - L1 LINE L1 -985 5161 4985 378 0 0 0 chrX 52304745 52304787 -110295143 + (TG)n Simple_repeat Simple_repeat 2 43 0 4021 194 43 49 chrX 52304787 52305784 -110294146 - L1 LINE L1 -1161 4985 3995 2125 289 63 21 chrX 52305787 52307352 -110292578 - L1MC/D LINE L1 -743 5403 3863 11339 166 12 1 chrX 52307357 52310109 -110289821 - L1PA12 LINE L1 -284 5884 3108 16589 192 28 23 chrX 52310121 52314151 -110285779 + L1M1 LINE L1 126 4180 -3385 1748 156 7 14 chrX 52314151 52314440 -110285490 + AluSx SINE Alu 23 309 -3 16589 192 28 23 chrX 52314440 52314806 -110285124 + L1M1 LINE L1 4180 4543 -3022 18499 156 102 64 chrX 52314815 52315215 -110284715 + L1MA1 LINE L1 12 395 -5907 315 0 0 0 chrX 52315215 52315250 -110284680 + (TTG)n Simple_repeat Simple_repeat 2 36 0 18499 156 102 64 chrX 52315250 52320902 -110279028 + L1MA1 LINE L1 395 6302 0 33 66 0 0 chrX 52320902 52320963 -110278967 + AT_rich Low_complexity Low_complexity 1 61 0 11746 202 39 14 chrX 52320967 52321614 -110278316 - L1PB1 LINE L1 0 6867 6238 204 40 0 0 chrX 52321614 52321639 -110278291 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 11746 202 39 14 chrX 52321639 52326907 -110273023 - L1PB1 LINE L1 -629 6238 634 848 214 5 0 chrX 52326910 52327097 -110272833 - L1PB1 LINE L1 -6668 195 8 1518 170 3 0 chrX 52327240 52327522 -110272408 + L1PBa LINE L1 875 1157 -5706 13293 231 28 41 chrX 52327562 52330881 -110269049 + L1PA14 LINE L1 6 3366 -4372 743 85 0 0 chrX 52330881 52330987 -110268943 + AluY SINE Alu 201 306 -5 13293 231 28 41 chrX 52330987 52333292 -110266638 + L1PA14 LINE L1 3366 5039 -2699 273 57 0 0 chrX 52333292 52333327 -110266603 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 13293 231 28 41 chrX 52333327 52335987 -110263943 + L1PA14 LINE L1 5039 7732 -6 3023 239 28 30 chrX 52336065 52337537 -110262393 + L1MB3 LINE L1 4696 6175 -8 1606 251 78 14 chrX 52337786 52338283 -110261647 - LTR68 LTR ERV1 -209 531 3 595 274 67 50 chrX 52338955 52339371 -110260559 + L1MCb LINE L1 611 1033 -5012 11461 239 26 25 chrX 52339376 52342651 -110257279 - L1PA12 LINE L1 -1398 6186 2908 4239 296 85 67 chrX 52342663 52345052 -110254878 - L1PA12 LINE L1 -5096 2485 54 236 29 0 29 chrX 52345061 52345095 -110254835 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 6026 101 29 8 chrX 52345095 52346078 -110253852 - L1PA10 LINE L1 -19 6149 5153 3837 263 33 75 chrX 52346083 52348291 -110251639 - L1PA12 LINE L1 -4324 3260 1133 277 229 33 0 chrX 52348300 52348361 -110251569 - L1PA12 LINE L1 -7508 73 11 2754 246 53 18 chrX 52348378 52349882 -110250048 + L1MB1 LINE L1 4290 5848 -320 2056 178 28 39 chrX 52349899 52350331 -110249599 + MSTC LTR MaLR 2 428 0 2595 282 68 51 chrX 52350332 52351413 -110248517 + MSTC-int LTR MaLR 2 1101 -634 866 191 0 25 chrX 52351420 52351577 -110248353 + MSTC LTR MaLR 270 422 -6 1086 200 39 8 chrX 52351577 52351837 -110248093 + L1MB1 LINE L1 5897 6164 -4 577 292 82 18 chrX 52351840 52352360 -110247570 + L1MEc LINE L1 1296 1940 -4486 796 220 183 0 chrX 52352470 52352661 -110247269 + L1PA13 LINE L1 1 226 -6561 * 7600 245 53 12 chrX 52352657 52355045 -110244885 + L1PA13 LINE L1 604 3109 -3688 1739 176 145 18 chrX 52355045 52355425 -110244505 - MSTA LTR MaLR 0 428 1 5153 209 11 19 chrX 52355425 52356466 -110243464 - MSTA-int LTR MaLR 0 1580 549 206 154 26 0 chrX 52356470 52356509 -110243421 + GA-rich Low_complexity Low_complexity 1 40 0 244 345 30 20 chrX 52356634 52356837 -110243093 - L2 LINE L2 -2482 832 628 * 257 329 84 62 chrX 52356815 52357171 -110242759 + L2 LINE L2 1109 1472 -1842 217 294 98 42 chrX 52357173 52357316 -110242614 + MIR SINE MIR 107 257 -5 1815 196 36 24 chrX 52357317 52357820 -110242110 + MLT2A2 LTR ERVL 1 409 -44 293 130 99 0 chrX 52357820 52357982 -110241948 + (TA)n Simple_repeat Simple_repeat 1 178 0 384 108 95 12 chrX 52358042 52358544 -110241386 + (TA)n Simple_repeat Simple_repeat 1 543 0 443 90 89 17 chrX 52358584 52359299 -110240631 + (TA)n Simple_repeat Simple_repeat 1 766 0 234 118 20 59 chrX 52359299 52359350 -110240580 + MLT2A2 LTR ERVL 464 512 -8 1135 147 0 0 chrX 52359357 52359548 -110240382 + HERVL-A2 LTR ERVL 3 193 -5461 3225 149 74 27 chrX 52359548 52360624 -110239306 + MER11A LTR ERVK 1 1232 -4 19853 130 16 6 chrX 52360625 52361717 -110238213 + HERVL-A2 LTR ERVL 185 1264 -4390 2512 127 0 11 chrX 52361717 52362096 -110237834 - THE1C LTR MaLR 0 375 1 19853 130 16 6 chrX 52362096 52363999 -110235931 + HERVL-A2 LTR ERVL 1264 3210 -2444 2279 153 15 0 chrX 52363996 52364387 -110235543 + HERVL-A2 LTR ERVL 5258 5654 0 * 2512 98 4 179 chrX 52364387 52364936 -110234994 + MLT2A2 LTR ERVL 1 453 0 742 245 0 13 chrX 52365232 52365387 -110234543 + FRAM SINE Alu 9 161 -15 183 355 106 28 chrX 52365428 52365710 -110234220 + L2 LINE L2 1844 2147 -1167 321 277 92 7 chrX 52365732 52365873 -110234057 + L1MCa LINE L1 2052 2204 -4222 1035 320 43 38 chrX 52365875 52366453 -110233477 + L1M2 LINE L1 5 1145 -6440 436 310 48 55 chrX 52367452 52367526 -110232404 + L1M2 LINE L1 1524 1597 -5988 3093 135 22 6 chrX 52367526 52368029 -110231901 + MER9 LTR ERVK 1 511 0 436 310 48 55 chrX 52368029 52368225 -110231705 + L1M2 LINE L1 1597 1792 -5793 438 217 0 33 chrX 52368281 52368373 -110231557 + AluY SINE Alu 199 287 -24 2079 221 68 44 chrX 52368379 52369709 -110230221 - L1MA10 LINE L1 -18 6316 4843 643 262 35 0 chrX 52369709 52369854 -110230076 + MLT1A1 LTR MaLR 1 150 -215 2523 152 7 75 chrX 52369886 52370457 -110229473 - L1MA2 LINE L1 0 6304 5773 4773 164 17 18 chrX 52370462 52371277 -110228653 - L1PB3 LINE L1 -2 6152 5338 5797 121 17 2 chrX 52371277 52371617 -110228313 - L1PA13 LINE L1 -5 6158 5825 405 70 0 0 chrX 52371617 52371674 -110228256 + (TTG)n Simple_repeat Simple_repeat 1 57 0 1602 96 0 0 chrX 52371674 52371871 -110228059 - AluY SINE Alu -31 280 84 5797 121 17 2 chrX 52371871 52372836 -110227094 - L1PA13 LINE L1 -337 5826 4854 4773 164 17 18 chrX 52372836 52372915 -110227015 - L1PB3 LINE L1 -816 5338 5259 2957 183 3 14 chrX 52372913 52373914 -110226016 - L1MA2 LINE L1 -540 5764 4774 * 822 218 5 3 chrX 52373914 52375204 -110224726 - ALR/Alpha Satellite centromeric 0 1293 1 752 234 15 6 chrX 52375244 52376057 -110223873 - ALR/Alpha Satellite centromeric 0 820 1 5284 92 36 4 chrX 52376067 52376850 -110223080 + L1PA7 LINE L1 5346 6153 -1 893 221 10 12 chrX 52376864 52377716 -110222214 - ALR/Alpha Satellite centromeric -4 8842 7990 5052 161 24 40 chrX 52377716 52378700 -110221230 - LTR5 LTR ERVK 0 969 1 893 221 10 12 chrX 52378700 52383317 -110216613 - ALR/Alpha Satellite centromeric -856 7990 3368 207 0 0 0 chrX 52383317 52383340 -110216590 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 893 221 10 12 chrX 52383340 52383775 -110216155 - ALR/Alpha Satellite centromeric -5478 3368 2934 1960 136 11 0 chrX 52383775 52384061 -110215869 + AluSc SINE Alu 1 289 -20 893 221 10 12 chrX 52384061 52385719 -110214211 - ALR/Alpha Satellite centromeric -5912 2934 1 14712 52 2 1 chrX 52585729 52588404 -110011526 + L1PA4 LINE L1 3476 6153 -2 637 229 23 6 chrX 52588429 52588604 -110011326 - L1 LINE L1 -1512 4634 4457 373 204 0 0 chrX 52588632 52588720 -110011210 - L1 LINE L1 -1602 4544 4457 225 185 0 0 chrX 52588724 52588789 -110011141 + (TA)n Simple_repeat Simple_repeat 2 66 0 558 238 16 37 chrX 52588940 52589129 -110010801 + L1 LINE L1 5079 5263 -883 2518 105 0 0 chrX 52589131 52589494 -110010436 - L1PA7 LINE L1 -27 6127 5765 1270 220 35 3 chrX 52589523 52589841 -110010089 + L1M1 LINE L1 2690 3017 -4548 1572 243 21 13 chrX 52589843 52590313 -110009617 + L1M1 LINE L1 4076 4549 -3016 198 194 45 0 chrX 52590613 52590680 -110009250 + GA-rich Low_complexity Low_complexity 3 72 0 421 351 69 19 chrX 52591202 52591449 -110008481 - MIR SINE MIR -6 256 2 183 314 110 8 chrX 52591744 52591862 -110008068 + MIR SINE MIR 35 164 -98 31 0 0 0 chrX 52592477 52592508 -110007422 + AT_rich Low_complexity Low_complexity 1 31 0 415 207 67 30 chrX 52592582 52592717 -110007213 + MER96B DNA MER1_type? 225 364 -53 361 205 248 31 chrX 52592979 52593140 -110006790 - L2 LINE L2 0 3313 3118 361 236 75 28 chrX 52594290 52594396 -110005534 + MER21B LTR ERV1 629 739 -124 276 186 3 61 chrX 52594468 52594542 -110005388 + L1M3c LINE L1 6 254 -5877 2287 153 22 15 chrX 52594543 52595005 -110004925 - LTR56 LTR ERV1 0 445 6 443 393 40 10 chrX 52595048 52595351 -110004579 + L1M3c LINE L1 139 450 -5691 411 316 29 23 chrX 52596430 52596604 -110003326 + L1M3c LINE L1 959 1133 -5008 3109 202 27 74 chrX 52596605 52598318 -110001612 + L1MA8 LINE L1 4603 6235 -56 1247 206 25 93 chrX 52598318 52598675 -110001255 - MLT2B3 LTR ERVL 0 554 223 830 257 57 3 chrX 52598804 52599119 -110000811 - L1M4 LINE L1 -3170 2976 2645 2103 274 26 11 chrX 52599134 52599667 -110000263 + MER21B LTR ERV1 13 553 -310 642 172 9 0 chrX 52599789 52599905 -110000025 - MLT2B3 LTR ERVL -433 121 5 268 148 0 0 chrX 52599909 52599970 -109999960 + L1MA7 LINE L1 6231 6291 0 1388 273 41 18 chrX 52599989 52600690 -109999240 + L1M3c LINE L1 1129 1832 -4379 672 83 39 32 chrX 52600700 52600856 -109999074 + GA-rich Low_complexity Low_complexity 2 158 0 1557 258 81 25 chrX 52600859 52601603 -109998327 + L1M1 LINE L1 2849 3633 -3932 213 132 0 0 chrX 52601607 52601645 -109998285 + (TA)n Simple_repeat Simple_repeat 1 38 0 2826 161 15 0 chrX 52601645 52602122 -109997808 - L1PB3 LINE L1 -17 6137 5654 2461 305 132 23 chrX 52602146 52602348 -109997582 + L1M1 LINE L1 3656 3835 -3730 1686 192 3 7 chrX 52602348 52602656 -109997274 + AluJb SINE Alu 1 307 -5 2461 305 132 23 chrX 52602656 52603723 -109996207 + L1M1 LINE L1 3835 5063 -2502 7203 262 49 36 chrX 52603726 52608218 -109991712 + L1M2 LINE L1 9 4558 -2290 25283 71 1 0 chrX 52608294 52612617 -109987313 + L1PA5 LINE L1 2064 6150 -4 244 174 41 133 chrX 52612618 52612716 -109987214 - L1M1 LINE L1 -4246 3319 3231 2410 231 40 5 chrX 52612817 52613510 -109986420 - L1M1 LINE L1 -4758 2807 2123 326 295 6 39 chrX 52613683 52613839 -109986091 - MER83B-int LTR ERV1 -480 4474 4324 216 0 0 0 chrX 52613907 52613931 -109985999 + (T)n Simple_repeat Simple_repeat 1 24 0 5974 195 96 11 chrX 52614256 52615772 -109984158 - MER83B-int LTR ERV1 -62 6269 4625 12199 243 38 20 chrX 52615780 52619993 -109979937 + L1PA15 LINE L1 1 4133 -2683 189 0 0 0 chrX 52619993 52620014 -109979916 + (CAA)n Simple_repeat Simple_repeat 3 23 0 12199 243 38 20 chrX 52620014 52620479 -109979451 + L1PA15 LINE L1 4133 4588 -2228 276 30 0 0 chrX 52620479 52620512 -109979418 + (CAA)n Simple_repeat Simple_repeat 1 33 0 12199 243 38 20 chrX 52620512 52622518 -109977412 + L1PA15 LINE L1 4588 6810 -6 4158 194 58 43 chrX 52622522 52623762 -109976168 - MER83B-int LTR ERV1 -1572 4691 3475 2954 204 15 0 chrX 52623766 52624310 -109975620 - MER41D LTR ERV1 -5 552 1 2475 150 42 25 chrX 52624310 52624889 -109975041 - MER83B-int LTR ERV1 -2096 2784 2317 286 181 349 0 chrX 52624885 52624968 -109974962 - MER83B-int LTR ERV1 -4144 979 868 * 496 272 0 0 chrX 52624957 52625060 -109974870 - MER83B-int LTR ERV1 -3737 2209 2107 362 190 184 74 chrX 52625050 52625138 -109974792 - MER83B-int LTR ERV1 -2594 2286 2209 * 387 0 0 0 chrX 52625138 52625181 -109974749 + (CA)n Simple_repeat Simple_repeat 2 44 0 362 190 184 74 chrX 52625181 52625255 -109974675 - MER83B-int LTR ERV1 -2671 2209 2106 226 344 16 0 chrX 52625290 52625354 -109974576 - tRNA-Glu-GAG tRNA tRNA -3 72 8 39860 79 3 2 chrX 52625539 52631678 -109968252 - L1PA5 LINE L1 0 6154 11 1995 139 14 3 chrX 52632198 52632542 -109967388 + L1MA2 LINE L1 5957 6304 0 4181 251 29 19 chrX 52633602 52634458 -109965472 - L1PA12 LINE L1 -2514 5070 4224 3883 121 29 5 chrX 52634458 52634731 -109965199 + L1PB1 LINE L1 5508 5773 -378 201 74 0 0 chrX 52634731 52634758 -109965172 + (TA)n Simple_repeat Simple_repeat 2 28 0 3883 121 29 5 chrX 52634758 52635111 -109964819 + L1PB1 LINE L1 5773 6149 -2 40 0 0 0 chrX 52635112 52635152 -109964778 + AT_rich Low_complexity Low_complexity 1 40 0 4181 251 29 19 chrX 52635152 52636931 -109962999 - L1PA12 LINE L1 -3359 4225 2358 230 385 34 8 chrX 52637320 52637437 -109962493 + L2 LINE L2 2940 3059 -213 230 264 192 27 chrX 52638507 52638645 -109961285 - MIR SINE MIR -53 155 5 1988 189 70 39 chrX 52638842 52639196 -109960734 - L1 LINE L1 -2728 3418 3076 1410 217 3 21 chrX 52639196 52639509 -109960421 - AluJo SINE Alu 0 308 1 1988 189 70 39 chrX 52639509 52639674 -109960256 - L1 LINE L1 -3070 3076 2918 2098 130 0 10 chrX 52639674 52639982 -109959948 - AluSx SINE Alu -5 307 3 1988 189 70 39 chrX 52639982 52640106 -109959824 - L1 LINE L1 -3228 2918 2752 468 129 0 0 chrX 52640106 52640191 -109959739 - L1MA4A LINE L1 -23 6280 6196 1884 201 50 14 chrX 52640198 52640680 -109959250 - L1MA4A LINE L1 -181 6122 5624 581 188 17 0 chrX 52640680 52640797 -109959133 + MSTA LTR MaLR 298 416 -12 2224 258 22 14 chrX 52640829 52641659 -109958271 - L1 LINE L1 -2865 3281 2446 983 234 60 0 chrX 52641662 52641931 -109957999 + L1 LINE L1 3449 3733 -2413 * 2689 97 0 0 chrX 52641929 52642311 -109957619 - L1P3 LINE L1 -5236 1225 844 6264 68 50 3 chrX 52642313 52643259 -109956671 + L1PA7 LINE L1 5164 6152 -2 746 269 57 13 chrX 52643269 52643585 -109956345 - L1MC4 LINE L1 -260 7782 7453 682 252 31 4 chrX 52643598 52643824 -109956106 - L1MC4 LINE L1 -663 7379 7148 182 77 39 39 chrX 52643833 52643885 -109956045 + (TA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chrX 52644766 52644787 -109955143 + AT_rich Low_complexity Low_complexity 1 21 0 510 331 11 6 chrX 52644811 52644986 -109954944 - MIR SINE MIR -47 215 40 2211 233 54 33 chrX 52645195 52646449 -109953481 - L1MB7 LINE L1 -5 6161 4848 1759 321 76 55 chrX 52646463 52647738 -109952192 + L1M3b LINE L1 1 1302 -4979 312 271 84 92 chrX 52648462 52648735 -109951195 + L1M2 LINE L1 796 1066 -5783 255 214 0 18 chrX 52649057 52649113 -109950817 + L1PA8 LINE L1 509 563 -5641 4722 195 66 21 chrX 52649150 52649330 -109950600 + L1PA8 LINE L1 701 872 -5331 2241 96 3 34 chrX 52649330 52649653 -109950277 + AluSp SINE Alu 1 313 0 4722 195 66 21 chrX 52649653 52650706 -109949224 + L1PA8 LINE L1 872 1989 -4214 21 0 0 0 chrX 52650706 52650727 -109949203 + AT_rich Low_complexity Low_complexity 1 21 0 9316 154 28 30 chrX 52650740 52653032 -109946898 + L1P3 LINE L1 10 2299 -4162 4045 62 0 0 chrX 52653028 52653580 -109946350 - L1PA5 LINE L1 -2363 3783 3232 * 12721 41 1 6 chrX 52653580 52655950 -109943980 + L1PA5 LINE L1 3772 6154 0 21 36 0 0 chrX 52656176 52656204 -109943726 + AT_rich Low_complexity Low_complexity 1 28 0 13662 131 18 3 chrX 52656204 52659240 -109940690 + L1PA8 LINE L1 3179 6223 -6 3852 248 34 36 chrX 52659242 52661014 -109938916 + L1P3 LINE L1 2266 4020 -2441 * 37858 77 3 0 chrX 52661012 52666311 -109933619 - L1P LINE L1 -822 5324 11 453 268 53 9 chrX 52666739 52666967 -109932963 - L1M4b LINE L1 -3988 3150 2913 208 203 16 16 chrX 52666979 52667043 -109932887 + (TA)n Simple_repeat Simple_repeat 1 64 0 216 0 0 0 chrX 52667255 52667279 -109932651 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 261 0 0 0 chrX 52667278 52667307 -109932623 + (GA)n Simple_repeat Simple_repeat 2 30 0 1033 262 105 35 chrX 52667505 52668559 -109931371 - L1M4b LINE L1 -4422 2716 1423 543 215 0 27 chrX 52668569 52668718 -109931212 - L1PA16 LINE L1 0 6481 6337 728 254 7 25 chrX 52668718 52668993 -109930937 - L1PA16 LINE L1 -835 5626 5357 5669 90 2 4 chrX 52669007 52669837 -109930093 - L1PA8 LINE L1 -8 6164 5336 * 21398 148 42 19 chrX 52669835 52674906 -109925024 - L1PA16 LINE L1 -1214 5247 1 1102 96 51 0 chrX 52674927 52675084 -109924846 - AluSg/x SINE Alu -13 299 135 10490 259 20 11 chrX 52675094 52679304 -109920626 - L1PA12 LINE L1 -1111 6473 2228 429 203 0 34 chrX 52680082 52680200 -109919730 - L1M4b LINE L1 -5434 1425 1312 595 286 43 31 chrX 52680492 52680747 -109919183 - L1M4b LINE L1 -6584 275 18 301 291 31 39 chrX 52680783 52680910 -109919020 - L2 LINE L2 0 3272 3147 272 221 74 63 chrX 52681032 52681127 -109918803 + MER117 DNA MER1_type 102 197 0 423 320 188 50 chrX 52681683 52682061 -109917869 + L2 LINE L2 2824 3253 -19 679 298 69 25 chrX 52682155 52682482 -109917448 + MIR SINE MIR 9 230 -32 2017 126 4 0 chrX 52683470 52683747 -109916183 + AluSq SINE Alu 1 278 -35 365 39 0 19 chrX 52683749 52683801 -109916129 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 346 303 69 7 chrX 52683908 52684053 -109915877 - MIR SINE MIR -56 206 53 244 261 130 11 chrX 52684436 52684528 -109915402 + MIR SINE MIR 81 183 -79 1479 182 74 0 chrX 52685165 52685423 -109914507 + AluJb SINE Alu 1 277 -35 5792 125 5 13 chrX 52685427 52686324 -109913606 + THE1-int LTR MaLR 430 1318 -262 1668 201 56 12 chrX 52686612 52687025 -109912905 + L1MB8 LINE L1 5743 6173 -5 3574 271 37 5 chrX 52687036 52688702 -109911228 + L1M1 LINE L1 18 2413 -5152 22693 93 11 4 chrX 52688717 52692087 -109907843 + L1P LINE L1 12 3404 -2742 198 191 0 0 chrX 52692192 52692234 -109907696 + (TA)n Simple_repeat Simple_repeat 1 42 0 240 281 0 0 chrX 52692272 52692361 -109907569 + L1MC4 LINE L1 6615 6703 -1339 301 253 72 0 chrX 52692390 52692473 -109907457 + L1MC4 LINE L1 6615 6703 -1339 42 0 0 0 chrX 52692503 52692545 -109907385 + AT_rich Low_complexity Low_complexity 1 42 0 326 117 63 0 chrX 52692563 52692674 -109907256 + (TA)n Simple_repeat Simple_repeat 2 119 0 7261 245 28 36 chrX 52692701 52695978 -109903952 - L1 LINE L1 -1734 5114 1819 1860 155 35 3 chrX 52695978 52696268 -109903662 + AluSx SINE Alu 3 301 -11 7261 245 28 36 chrX 52696268 52696525 -109903405 - L1 LINE L1 -5029 1819 1561 990 220 62 0 chrX 52696601 52696874 -109903056 + L1MA3 LINE L1 6016 6305 0 370 270 72 0 chrX 52697456 52697567 -109902363 - MIR SINE MIR -75 187 69 248 346 19 62 chrX 52697943 52698105 -109901825 + L2 LINE L2 2904 3058 -214 232 215 0 31 chrX 52698493 52698558 -109901372 + L1M3c LINE L1 1 63 -6078 216 130 0 0 chrX 52698558 52698604 -109901326 + (A)n Simple_repeat Simple_repeat 1 46 0 3424 245 131 7 chrX 52699039 52700149 -109899781 + ERVL LTR ERVL 789 2088 -3676 10336 240 35 36 chrX 52700164 52700995 -109898935 - L1PB4 LINE L1 -2 6857 6027 2401 73 0 13 chrX 52700995 52701298 -109898632 - AluY SINE Alu -12 299 1 10336 240 35 36 chrX 52701298 52706142 -109893788 - L1PB4 LINE L1 -832 6027 1222 713 329 29 48 chrX 52706116 52707577 -109892353 - L1PB4 LINE L1 -5290 1559 14 * 3598 198 28 14 chrX 52707765 52708506 -109891424 + ERVL LTR ERVL 2087 2838 -2926 417 193 36 0 chrX 52708531 52708614 -109891316 + ERVL LTR ERVL 4516 4601 -1163 920 221 136 36 chrX 52708619 52708950 -109890980 + MLT1B LTR MaLR 4 367 -23 1465 143 0 34 chrX 52708950 52709187 -109890743 - AluSg SINE Alu -81 229 1 524 194 19 39 chrX 52709216 52709342 -109890588 + L1MA4 LINE L1 5913 6037 -263 12450 37 3 0 chrX 52709342 52711627 -109888303 + L1PA3 LINE L1 3865 6151 -4 524 194 19 39 chrX 52711627 52711655 -109888275 + L1MA4 LINE L1 6037 6064 -236 27651 122 11 61 chrX 52711657 52718139 -109881791 + L1PA7 LINE L1 3 6152 -2 1223 163 4 16 chrX 52718139 52718370 -109881560 + L1MA4 LINE L1 6039 6286 -14 28 29 0 0 chrX 52718427 52718462 -109881468 + AT_rich Low_complexity Low_complexity 1 35 0 2529 287 81 28 chrX 52718489 52719633 -109880297 + L1M3c LINE L1 129 1333 -4808 * 3709 240 59 28 chrX 52719614 52721129 -109878801 + L1M3c LINE L1 2338 3899 -2311 1580 196 36 0 chrX 52721134 52721465 -109878465 + MER7A DNA MER2_type 6 346 0 2349 209 36 6 chrX 52721472 52721782 -109878148 + L1M3c LINE L1 3905 4204 -2006 297 0 0 0 chrX 52721782 52721815 -109878115 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2349 209 36 6 chrX 52721815 52722237 -109877693 + L1M3c LINE L1 4204 4612 -1598 189 0 0 0 chrX 52722237 52722258 -109877672 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2349 209 36 6 chrX 52722258 52722571 -109877359 + L1M3c LINE L1 4612 5087 -1123 391 393 72 42 chrX 52722657 52723158 -109876772 + L1PB4 LINE L1 14 529 -6320 243 366 20 26 chrX 52723299 52723452 -109876478 + L1PB4 LINE L1 707 858 -5991 1668 229 47 10 chrX 52724015 52724672 -109875258 + L1PB4 LINE L1 1355 2132 -4716 21 0 0 0 chrX 52724672 52724693 -109875237 + AT_rich Low_complexity Low_complexity 1 21 0 2777 99 53 0 chrX 52724740 52725152 -109874778 + LTR17 LTR ERV1 347 780 0 13460 89 12 38 chrX 52725152 52727220 -109872710 + HERV17 LTR ERV1 2 2014 -6612 * 28121 52 2 10 chrX 52727205 52729208 -109870722 + HERV17 LTR ERV1 2430 4393 -4233 2215 113 0 3 chrX 52729208 52729510 -109870420 - AluY SINE Alu -10 301 1 28121 52 2 10 chrX 52729510 52731125 -109868805 + HERV17 LTR ERV1 4393 6019 -2607 2180 90 0 0 chrX 52731159 52731460 -109868470 + HERV17 LTR ERV1 6832 8621 -5 2381 68 3 3 chrX 52731466 52731791 -109868139 + LTR17 LTR ERV1 1 325 -455 1230 218 27 0 chrX 52731791 52732084 -109867846 + L1PB4 LINE L1 2133 2433 -4415 1351 30 0 0 chrX 52732085 52732250 -109867680 - L1PA5 LINE L1 -397 5757 5593 3182 45 8 0 chrX 52732251 52732647 -109867283 + L1PA5 LINE L1 5756 6154 0 5949 238 80 16 chrX 52732648 52734902 -109865028 + L1PB4 LINE L1 2413 4787 -2061 4512 192 48 17 chrX 52737987 52740012 -109859918 + L1PB4 LINE L1 4770 6857 -1 3470 199 52 15 chrX 52740022 52741020 -109858910 + L1MA9 LINE L1 5009 6041 -271 191 36 36 0 chrX 52741029 52741057 -109858873 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 363 78 0 0 chrX 52741056 52741107 -109858823 + (TG)n Simple_repeat Simple_repeat 2 52 0 2421 206 100 11 chrX 52741135 52741876 -109858054 + L1MC3 LINE L1 5512 6334 -10 1810 52 9 13 chrX 52744434 52744666 -109855264 - AluY SINE Alu -15 296 66 845 228 96 51 chrX 52744666 52744993 -109854937 + MLT1A1 LTR MaLR 7 348 -17 23851 45 2 0 chrX 52745063 52748785 -109851145 - L1PA4 LINE L1 0 6155 2382 742 355 77 62 chrX 52749599 52750231 -109849699 - L2 LINE L2 -610 2704 2083 930 124 0 26 chrX 52750231 52750384 -109849546 + L1MA2 LINE L1 6156 6304 0 742 355 77 62 chrX 52750384 52750787 -109849143 - L2 LINE L2 -1231 2083 1688 207 0 0 0 chrX 52750787 52750810 -109849120 + (TG)n Simple_repeat Simple_repeat 1 23 0 742 355 77 62 chrX 52750810 52751223 -109848707 - L2 LINE L2 -1626 1688 1233 1918 85 15 3 chrX 52752313 52754085 -109845845 + L1PA7 LINE L1 4247 6119 -35 301 276 9 9 chrX 52754102 52754218 -109845712 + L1M4 LINE L1 3211 3326 -2820 576 309 19 4 chrX 52754318 52754580 -109845350 + L1M4 LINE L1 4847 5112 -1034 344 212 20 0 chrX 52754585 52754684 -109845246 + L1M LINE L1 5292 5392 -792 8782 177 16 12 chrX 52754726 52757627 -109842303 + L1PB1 LINE L1 3241 6150 -1 266 200 0 0 chrX 52757639 52757694 -109842236 + L1MB4 LINE L1 6124 6178 -2 4582 181 10 7 chrX 52757839 52758704 -109841226 + L1PA16 LINE L1 5290 6157 -9 2743 172 48 2 chrX 52758720 52759256 -109840674 + L1PA16 LINE L1 5602 6162 -4 1566 205 36 23 chrX 52759274 52759412 -109840518 - L1 LINE L1 -3386 3781 3646 2140 167 6 0 chrX 52759412 52759747 -109840183 - MER1B DNA MER1_type 0 337 1 1566 205 36 23 chrX 52759747 52759993 -109839937 - L1 LINE L1 -3521 3646 3392 4073 258 63 31 chrX 52760017 52761962 -109837968 - L1 LINE L1 -3898 3269 1553 1967 315 28 18 chrX 52762201 52762881 -109837049 - L1 LINE L1 -6479 689 3 999 219 15 0 chrX 52762919 52763120 -109836810 - Charlie1a DNA MER1_type -1202 253 50 3240 268 51 13 chrX 52763306 52764197 -109835733 + L1PA13 LINE L1 295 1151 -5646 213 39 0 0 chrX 52764197 52764223 -109835707 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 3240 268 51 13 chrX 52764223 52765181 -109834749 + L1PA13 LINE L1 1151 2684 -4113 8171 257 38 14 chrX 52765186 52767867 -109832063 + L1 LINE L1 3168 5914 -883 3006 46 0 0 chrX 52767866 52768232 -109831698 - L1PA7 LINE L1 -24 6130 5765 * 1289 220 35 3 chrX 52768261 52768579 -109831351 + L1M1 LINE L1 2690 3017 -4548 1612 224 26 8 chrX 52768581 52769280 -109830650 + L1M1 LINE L1 4076 5037 -2528 2905 95 2 0 chrX 52769282 52769692 -109830238 + L1PA8 LINE L1 5757 6167 -5 2665 257 66 15 chrX 52769722 52770806 -109829124 + L1M4c LINE L1 911 2131 -4253 844 250 40 0 chrX 52770875 52771123 -109828807 + L1M4c LINE L1 3025 3282 -3100 2136 108 6 18 chrX 52771127 52771468 -109828462 + L1MA3 LINE L1 5969 6305 0 2948 186 25 50 chrX 52771474 52772168 -109827762 + L1MB1 LINE L1 5492 6167 -1 412 234 2 0 chrX 52772176 52772308 -109827622 + L1M4c LINE L1 3248 3382 -3000 * 4638 71 1 3 chrX 52772304 52773271 -109826659 - L1PA7 LINE L1 -295 5859 4894 2122 107 0 0 chrX 52773271 52773567 -109826363 + L1PA7 LINE L1 5854 6153 -1 3894 250 50 13 chrX 52773578 52774931 -109824999 + L1M4c LINE L1 3365 4766 -1616 328 290 73 8 chrX 52775168 52775292 -109824638 - MIR SINE MIR -82 180 49 228 271 179 0 chrX 52775300 52775440 -109824490 - L1ME4a LINE L1 -1 6120 5956 21 0 0 0 chrX 52775477 52775498 -109824432 + AT_rich Low_complexity Low_complexity 1 21 0 324 225 108 0 chrX 52775510 52775639 -109824291 - L1ME4a LINE L1 -12 6109 5967 10118 237 31 53 chrX 52775769 52780787 -109819143 - L1PB4 LINE L1 -3 6855 1906 233 167 61 0 chrX 52780791 52780857 -109819073 + (TA)n Simple_repeat Simple_repeat 2 71 0 323 328 0 0 chrX 52780858 52780976 -109818954 - L1MC4 LINE L1 -1339 6703 6609 373 171 23 0 chrX 52780999 52781087 -109818843 + (TA)n Simple_repeat Simple_repeat 2 91 0 285 230 23 0 chrX 52781088 52781175 -109818755 + L1MC4 LINE L1 6615 6703 -1339 * 286 228 0 22 chrX 52781097 52781189 -109818741 - L1MC4 LINE L1 -1339 6703 6614 516 86 57 0 chrX 52781192 52781297 -109818633 + (TA)n Simple_repeat Simple_repeat 1 111 0 3536 276 47 7 chrX 52781297 52782268 -109817662 - L1PB4 LINE L1 -4977 1872 863 3932 255 37 19 chrX 52782410 52784070 -109815860 + L1PA12 LINE L1 2203 3918 -3666 229 404 0 0 chrX 52784373 52784544 -109815386 + L1PA16 LINE L1 2328 2498 -5083 288 0 0 0 chrX 52784558 52784590 -109815340 + (A)n Simple_repeat Simple_repeat 1 32 0 11312 241 32 17 chrX 52784631 52789581 -109810349 + L1PA16 LINE L1 2591 7604 0 2566 101 19 3 chrX 52789663 52790040 -109809890 - L1PA13 LINE L1 -2 6161 5779 197 205 0 0 chrX 52840395 52840434 -109759496 - L2 LINE L2 -4 3268 3230 695 185 38 22 chrX 52840791 52840975 -109758955 - MER53 DNA DNA 0 189 3 22 0 0 0 chrX 52841050 52841072 -109758858 + AT_rich Low_complexity Low_complexity 1 22 0 376 368 82 21 chrX 52841156 52841496 -109758434 + L1MEc LINE L1 2113 2473 -3923 417 311 134 18 chrX 52841925 52842365 -109757565 + L1MEc LINE L1 2932 3422 -2793 191 171 0 0 chrX 52842417 52842452 -109757478 + L2 LINE L2 3235 3269 -3 545 248 147 0 chrX 52842679 52842836 -109757094 - MIR SINE MIR -4 258 79 198 143 0 0 chrX 52842958 52842993 -109756937 + (TC)n Simple_repeat Simple_repeat 2 36 0 235 206 0 41 chrX 52843020 52843093 -109756837 - L1MC4a LINE L1 -1871 5937 5868 574 273 50 40 chrX 52843640 52843838 -109756092 + MIR SINE MIR 60 259 -3 835 235 18 66 chrX 52844028 52844197 -109755733 - MIR SINE MIR 0 262 109 2517 61 0 3 chrX 52844197 52844508 -109755422 + AluY SINE Alu 1 310 -1 835 235 18 66 chrX 52844508 52844610 -109755320 - MIR SINE MIR -153 109 4 497 56 0 144 chrX 52844721 52844811 -109755119 - MADE1 DNA Mariner 0 80 4 205 372 0 13 chrX 52844971 52845049 -109754881 - L2 LINE L2 -16 3297 3221 267 103 0 0 chrX 52845472 52845511 -109754419 + (GA)n Simple_repeat Simple_repeat 2 40 0 323 290 151 27 chrX 52846300 52846486 -109753444 + MIR SINE MIR 53 261 -1 440 323 194 32 chrX 52846636 52847495 -109752435 + L2 LINE L2 2222 3267 -5 539 260 79 15 chrX 52847883 52848077 -109751853 + MIR SINE MIR 13 208 -54 754 241 73 34 chrX 52848089 52848417 -109751513 - L1MB2 LINE L1 -36 6135 5795 910 140 0 70 chrX 52848421 52848618 -109751312 - AluSg/x SINE Alu 0 323 138 2651 291 47 56 chrX 52848620 52850330 -109749600 + L1PA12 LINE L1 527 2477 -5104 * 5202 140 17 3 chrX 52850305 52851282 -109748648 + L1PA15 LINE L1 6607 7596 -7 3675 185 49 27 chrX 52851557 52852474 -109747456 - L1MD1 LINE L1 -2 6240 5304 458 198 49 110 chrX 52852536 52852799 -109747131 - L1MD1 LINE L1 -1439 4707 4461 2004 211 7 0 chrX 52852800 52853218 -109746712 - L1PA13 LINE L1 -1950 4847 4427 22687 87 4 8 chrX 52853236 52857437 -109742493 - L1PA7 LINE L1 -1 6153 1973 23271 135 11 61 chrX 52857578 52862317 -109737613 - L1P LINE L1 -1643 4503 1 9430 226 96 8 chrX 52862330 52866058 -109733872 - L1PA13 LINE L1 -2358 4439 339 * 11578 172 20 1 chrX 52866056 52868017 -109731913 - L1PA12 LINE L1 -5577 2004 5 3949 209 39 61 chrX 52868025 52870431 -109729499 - L1P4 LINE L1 -382 5781 3433 942 252 5 0 chrX 52870559 52870773 -109729157 - L1MDa LINE L1 -6283 257 43 259 376 86 14 chrX 52870823 52871102 -109728828 + L2 LINE L2 2405 2703 -611 1345 261 78 30 chrX 52871111 52871264 -109728666 - L1ME2 LINE L1 -106 6058 5914 2231 103 0 0 chrX 52871264 52871554 -109728376 - AluSx SINE Alu 0 312 23 1345 261 78 30 chrX 52871554 52872723 -109727207 - L1ME2 LINE L1 -250 5914 4680 25 31 0 0 chrX 52872904 52872936 -109726994 + AT_rich Low_complexity Low_complexity 1 32 0 3095 223 34 21 chrX 52873000 52873828 -109726102 - L1MA9 LINE L1 0 6312 5496 2256 90 3 37 chrX 52873828 52874150 -109725780 + AluY SINE Alu 1 311 0 3095 223 34 21 chrX 52874150 52875144 -109724786 - L1MA9 LINE L1 -816 5496 4369 6385 86 7 0 chrX 52875144 52876313 -109723617 - L1PA7 LINE L1 0 6469 5295 27234 128 14 26 chrX 52876313 52881125 -109718805 - L1PA7 LINE L1 -1394 5067 2 4277 204 31 2 chrX 52881133 52882182 -109717748 - L1MA9 LINE L1 -1771 4375 3296 23 0 0 0 chrX 52882182 52882205 -109717725 + AT_rich Low_complexity Low_complexity 1 23 0 882 154 6 0 chrX 52882211 52882386 -109717544 - L1MA8 LINE L1 -21 6270 6095 371 102 0 0 chrX 52882386 52882445 -109717485 - L1MB8 LINE L1 -2 6176 6118 448 230 0 0 chrX 52882456 52882582 -109717348 - L1 LINE L1 -1700 4446 4321 1036 217 33 65 chrX 52883120 52883657 -109716273 - PABL_B LTR ERV1 -4 663 1 198 0 0 0 chrX 52884030 52884052 -109715878 + (A)n Simple_repeat Simple_repeat 1 22 0 2410 91 3 0 chrX 52884066 52884375 -109715555 - AluSp SINE Alu -3 310 1 190 390 40 0 chrX 52884717 52884817 -109715113 + L2 LINE L2 3167 3270 -43 488 270 131 22 chrX 52885050 52885272 -109714658 + MLT1J LTR MaLR 117 362 -149 255 103 0 0 chrX 52885343 52885382 -109714548 + (GA)n Simple_repeat Simple_repeat 2 40 0 1437 280 94 0 chrX 52885701 52886191 -109713739 + Cheshire DNA MER1_type 2 537 -1883 18273 139 19 85 chrX 52886210 52890380 -109709550 - L1P LINE L1 -2240 3906 12 3732 113 15 27 chrX 52890403 52891005 -109708925 - L1P3 LINE L1 -5159 1302 708 1849 124 10 0 chrX 52891005 52891296 -109708634 + L1PB2 LINE L1 5857 6150 -1 1085 211 178 0 chrX 52891345 52891682 -109708248 - L1P LINE L1 -795 5351 4955 * 1121 331 32 43 chrX 52891679 52892328 -109707602 + L1PA15 LINE L1 258 899 -5888 * 3251 248 37 22 chrX 52892327 52893561 -109706369 + L1PA15 LINE L1 1295 2567 -4230 492 156 7 96 chrX 52893555 52893716 -109706214 + L1PA15 LINE L1 4117 4259 -2538 * 1837 170 36 97 chrX 52893715 52894191 -109705739 + L1PA15 LINE L1 6357 6803 -13 5527 119 3 3 chrX 52894202 52895229 -109704701 - L1PA13 LINE L1 -4 6159 5111 25 0 0 0 chrX 52895237 52895262 -109704668 + AT_rich Low_complexity Low_complexity 1 25 0 4161 212 11 16 chrX 52895533 52897141 -109702789 + L1MA6 LINE L1 4696 6300 0 495 221 102 0 chrX 52897162 52897289 -109702641 + Cheshire DNA MER1_type 1727 1866 -554 388 194 10 10 chrX 52897297 52897395 -109702535 + Cheshire DNA MER1_type 2054 2151 -269 * 1582 180 6 38 chrX 52897392 52897736 -109702194 + MER49 LTR ERV1 177 509 -414 1755 158 37 0 chrX 52897809 52898081 -109701849 - AluSx SINE Alu -30 282 1 2088 119 25 0 chrX 52898082 52898402 -109701528 + MER1A DNA MER1_type 100 427 -102 24 0 0 0 chrX 52898680 52898704 -109701226 + AT_rich Low_complexity Low_complexity 1 24 0 376 226 168 0 chrX 52898717 52898854 -109701076 + MER53 DNA DNA 30 189 0 1764 141 11 25 chrX 52898903 52899218 -109700712 + AluSx SINE Alu 3 313 0 236 261 45 0 chrX 52899452 52899540 -109700390 - MLT1J LTR MaLR -34 477 386 681 247 31 49 chrX 52901081 52901304 -109698626 + MIR SINE MIR 8 226 -36 605 311 53 82 chrX 52901723 52901766 -109698164 + L1MEd LINE L1 858 901 -5515 381 22 0 0 chrX 52901766 52901812 -109698118 + (CA)n Simple_repeat Simple_repeat 2 47 0 605 311 53 82 chrX 52901812 52902293 -109697637 + L1MEd LINE L1 901 1367 -5049 274 231 19 37 chrX 52902295 52902403 -109697527 + L1MEd LINE L1 1226 1331 -5095 228 348 113 39 chrX 52902589 52903083 -109696847 - L2 LINE L2 -2225 1089 559 2386 264 79 18 chrX 52904186 52905162 -109694768 + L1PB1 LINE L1 12 1046 -5817 7935 178 36 2 chrX 52905166 52907975 -109691955 + L1PB1 LINE L1 1094 4137 -2725 2447 93 31 83 chrX 52907982 52908402 -109691528 - MER48 LTR ERV1 0 398 1 1328 82 0 0 chrX 52908402 52908585 -109691345 - HERVH48 LTR ERV1 0 6654 6472 * 29834 38 13 1 chrX 52908573 52912384 -109687546 - HERVH48 LTR ERV1 -988 5666 1809 7194 62 7 15 chrX 52912393 52913519 -109686411 - HERVH48 LTR ERV1 -5464 1190 1 2485 120 30 33 chrX 52913520 52913919 -109686011 - MER48 LTR ERV1 0 398 1 7218 180 38 7 chrX 52913924 52916196 -109683734 + L1PB1 LINE L1 4146 6521 -346 1053 127 0 0 chrX 52916196 52916362 -109683568 + (TA)n Simple_repeat Simple_repeat 1 166 0 7218 180 38 7 chrX 52916362 52916720 -109683210 + L1PB1 LINE L1 6521 6866 -1 23 33 0 0 chrX 52916720 52916750 -109683180 + AT_rich Low_complexity Low_complexity 1 30 0 5603 113 0 18 chrX 52916872 52916911 -109683019 - L1PA8 LINE L1 -16 6156 6118 261 0 0 0 chrX 52916911 52916940 -109682990 + (TA)n Simple_repeat Simple_repeat 1 29 0 5603 113 0 18 chrX 52916940 52917903 -109682027 - L1PA8 LINE L1 -54 6118 5126 1810 130 0 8 chrX 52918172 52918425 -109681505 + AluSg SINE Alu 53 303 -7 4602 252 36 4 chrX 52918432 52919870 -109680060 + L1M2 LINE L1 2723 4231 -2617 180 0 0 0 chrX 52919870 52919890 -109680040 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4602 252 36 4 chrX 52919890 52920089 -109679841 + L1M2 LINE L1 4231 4422 -2426 1456 289 30 27 chrX 52920090 52920599 -109679331 - L1PA15-16 LINE L1 -4712 2137 1631 1335 211 20 14 chrX 52920599 52920893 -109679037 - AluJo SINE Alu -16 296 1 1456 289 30 27 chrX 52920893 52921465 -109678465 - L1PA15-16 LINE L1 -5218 1631 899 1700 292 47 15 chrX 52921646 52922589 -109677341 - L1M4 LINE L1 -1550 4596 3624 4614 241 38 16 chrX 52922592 52923795 -109676135 + L1M1 LINE L1 17 1246 -6319 3213 132 12 6 chrX 52923795 52924303 -109675627 + MER9 LTR ERVK 1 511 0 3810 92 11 21 chrX 52924303 52924877 -109675053 + HERVK9 LTR ERVK 1 568 -5348 * 25674 82 2 1 chrX 52924875 52928361 -109671569 + HERVK9 LTR ERVK 1424 4915 -1001 4132 103 0 0 chrX 52928355 52928947 -109670983 + HERVK9 LTR ERVK 5043 5634 -282 * 2012 64 8 0 chrX 52929042 52929309 -109670621 + HERVK9 LTR ERVK 5635 5903 -13 3362 120 10 8 chrX 52929319 52929829 -109670101 + MER9 LTR ERVK 1 511 0 10408 200 33 43 chrX 52929829 52931442 -109668488 + L1M1 LINE L1 1239 2867 -4698 1849 125 8 0 chrX 52931442 52931706 -109668224 - AluSg1 SINE Alu -43 266 1 10408 200 33 43 chrX 52931706 52932170 -109667760 + L1M1 LINE L1 2867 3334 -4231 2164 128 3 3 chrX 52932170 52932467 -109667463 + AluSc SINE Alu 1 297 -12 10408 200 33 43 chrX 52932467 52933696 -109666234 + L1M1 LINE L1 3334 4516 -3049 12405 154 31 12 chrX 52933712 52936073 -109663857 + L1PB1 LINE L1 1 2407 -4456 8593 183 32 6 chrX 52936081 52937864 -109662066 + L1PB1 LINE L1 3768 5503 -1379 249 83 0 0 chrX 52937864 52937900 -109662030 + (CA)n Simple_repeat Simple_repeat 2 37 0 8593 183 32 6 chrX 52937900 52939121 -109660809 + L1PB1 LINE L1 5503 5138 -1744 7710 88 9 9 chrX 52939121 52940192 -109659738 - MER11C LTR ERVK 0 1071 1 8593 183 32 6 chrX 52940192 52941985 -109657945 + L1PB1 LINE L1 5137 6882 0 10328 144 15 23 chrX 52941995 52944072 -109655858 + L1PA8 LINE L1 9 2075 -4386 14634 134 11 14 chrX 52944072 52947291 -109652639 + L1PA8 LINE L1 3247 6472 -15 486 75 0 0 chrX 52947291 52947358 -109652572 + (CA)n Simple_repeat Simple_repeat 2 68 0 3005 121 29 13 chrX 52947377 52947904 -109652026 + L1MA2 LINE L1 5770 6304 0 386 357 34 11 chrX 52948013 52948282 -109651648 - L1 LINE L1 -2517 3629 3355 3672 50 42 60 chrX 52948314 52949368 -109650562 - MER11A LTR ERVK 0 1266 1 402 274 110 23 chrX 52949399 52949618 -109650312 - L1 LINE L1 -2889 3257 3020 13246 200 43 15 chrX 52949619 52949818 -109650112 - L1PA13 LINE L1 -4 6159 5967 222 91 0 0 chrX 52949818 52949851 -109650079 + (TG)n Simple_repeat Simple_repeat 2 34 0 13246 200 43 15 chrX 52949851 52953916 -109646014 - L1PA13 LINE L1 -196 5967 1793 2006 297 18 29 chrX 52953921 52955188 -109644742 + L1PBa LINE L1 601 1643 -5220 333 0 0 0 chrX 52955232 52955269 -109644661 + (TA)n Simple_repeat Simple_repeat 2 38 0 199 0 0 61 chrX 52955364 52955397 -109644533 + (TTA)n Simple_repeat Simple_repeat 3 33 0 8682 241 27 14 chrX 52955408 52959746 -109640184 + L1PB3 LINE L1 238 4685 -1518 3765 142 49 65 chrX 52959787 52960556 -109639374 + LTR1 LTR ERV1 29 785 0 5338 157 11 14 chrX 52960556 52961837 -109638093 + L1PB3 LINE L1 4671 5954 -257 1905 141 0 18 chrX 52961837 52962121 -109637809 + AluSx SINE Alu 1 279 -33 243 0 0 0 chrX 52962122 52962149 -109637781 + (CA)n Simple_repeat Simple_repeat 2 28 0 5338 157 11 14 chrX 52962149 52962407 -109637523 + L1PB3 LINE L1 5953 6211 0 971 179 73 0 chrX 52962416 52962604 -109637326 + L1MB2 LINE L1 5699 5907 -264 207 0 0 0 chrX 52962604 52962627 -109637303 + (CAA)n Simple_repeat Simple_repeat 2 24 0 971 179 73 0 chrX 52962627 52962656 -109637274 + L1MB2 LINE L1 5907 5932 -239 980 214 0 0 chrX 52962660 52962833 -109637097 + AluJb SINE Alu 85 257 -55 310 192 13 13 chrX 52962859 52962937 -109636993 + L1MC3 LINE L1 5865 5942 -2100 327 25 0 0 chrX 52962937 52962977 -109636953 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 204 49 17 chrX 52962989 52963277 -109636653 - MLT2D LTR ERVL -48 366 64 657 0 0 0 chrX 52963277 52963350 -109636580 + (TA)n Simple_repeat Simple_repeat 2 74 0 1423 204 49 17 chrX 52963350 52963409 -109636521 - MLT2D LTR ERVL -350 64 8 2358 198 138 52 chrX 52963411 52963541 -109636389 + L1MC3 LINE L1 5948 6065 -1720 1578 177 40 82 chrX 52963541 52963943 -109635987 + MLT1B LTR MaLR 4 388 -2 2358 198 138 52 chrX 52963943 52964426 -109635504 + L1MC3 LINE L1 6065 6655 -1130 282 29 0 0 chrX 52964426 52964461 -109635469 + (TG)n Simple_repeat Simple_repeat 2 36 0 2358 198 138 52 chrX 52964461 52964686 -109635244 + L1MC3 LINE L1 6655 6859 -926 3090 180 62 83 chrX 52966278 52967080 -109632850 - LTR1 LTR ERV1 0 785 1 5453 34 0 1 chrX 52967146 52967795 -109632135 - L1PA3 LINE L1 -4 6151 5504 39093 50 24 5 chrX 52968960 52974997 -109624933 + L1PA4 LINE L1 3 6155 0 31 0 0 0 chrX 52975013 52975044 -109624886 + AT_rich Low_complexity Low_complexity 1 31 0 4008 227 44 29 chrX 52975046 52977648 -109622282 + L1M1 LINE L1 23 2501 -5064 6539 145 30 14 chrX 52977657 52978274 -109621656 + L1PB1 LINE L1 1120 1725 -5137 1991 131 10 30 chrX 52978274 52978579 -109621351 + AluSx SINE Alu 1 299 -13 6539 145 30 14 chrX 52978579 52979921 -109620009 + L1PB1 LINE L1 1725 3303 -3559 36717 52 3 4 chrX 52979928 52984797 -109615133 + L1P LINE L1 1 4865 -1281 10571 193 14 7 chrX 52984795 52987901 -109612029 + L1PB1 LINE L1 3371 6453 -414 * 204 40 0 0 chrX 52987901 52987926 -109612004 + (TG)n Simple_repeat Simple_repeat 1 25 0 216 97 0 0 chrX 52987933 52987964 -109611966 + (TA)n Simple_repeat Simple_repeat 2 32 0 10571 193 14 7 chrX 52987964 52988317 -109611613 + L1PB1 LINE L1 6458 6860 -7 7722 203 30 26 chrX 52988330 52989069 -109610861 + L1M1 LINE L1 2449 3183 -4382 1577 235 0 3 chrX 52989069 52989354 -109610576 + AluSx SINE Alu 1 284 -28 7722 203 30 26 chrX 52989354 52990881 -109609049 + L1M1 LINE L1 3183 4734 -2831 1258 103 0 11 chrX 52990881 52991066 -109608864 + L1PA8 LINE L1 5990 6172 0 7722 203 30 26 chrX 52991066 52991861 -109608069 + L1M1 LINE L1 4734 5524 -2041 1686 205 23 0 chrX 52991872 52992218 -109607712 - L1PA16 LINE L1 -23 6143 5790 1517 73 0 78 chrX 52992228 52992460 -109607470 - AluY SINE Alu -10 301 88 5307 171 33 16 chrX 52992460 52993093 -109606837 + L1M1 LINE L1 5515 6136 -1583 2108 83 33 4 chrX 52993093 52993396 -109606534 + AluY SINE Alu 1 311 0 5307 171 33 16 chrX 52993396 52994447 -109605483 + L1M1 LINE L1 6136 7233 -486 239 220 0 34 chrX 52994939 52994998 -109604932 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 271 201 56 154 chrX 52999132 52999366 -109600564 + MER102b DNA MER1_type 81 291 -50 1364 304 22 33 chrX 52999486 53000366 -109599564 - L2 LINE L2 -5 3308 2440 511 248 101 46 chrX 53000374 53000612 -109599318 + HERVL40 LTR ERVL 606 856 -4674 2847 7 0 0 chrX 53001460 53001769 -109598161 + AluYb8 SINE Alu 1 309 -9 665 236 0 29 chrX 53002249 53002423 -109597507 + L1MEd LINE L1 37 205 -5914 806 338 126 19 chrX 53002524 53002679 -109597251 + L2 LINE L2 2652 2789 -524 4039 165 83 24 chrX 53002679 53003679 -109596251 + MER106B DNA MER1_type 1 1059 0 806 338 126 19 chrX 53003679 53004121 -109595809 + L2 LINE L2 2789 3313 0 253 250 17 42 chrX 53004764 53004884 -109595046 + L1MC/D LINE L1 5703 5819 -1989 838 273 104 16 chrX 53005709 53006141 -109593789 - MLT1L LTR MaLR -3 612 143 267 326 139 30 chrX 53006205 53006472 -109593458 - MLT1K LTR MaLR -146 442 147 870 269 29 7 chrX 53006679 53006958 -109592972 - L1ME3A LINE L1 -177 5993 5709 355 188 59 0 chrX 53006974 53007059 -109592871 - L1MA10 LINE L1 -1 6333 6244 13026 40 2 0 chrX 53007487 53009838 -109590092 + L1PA4 LINE L1 3800 6152 -3 21 0 0 0 chrX 53010262 53010283 -109589647 + AT_rich Low_complexity Low_complexity 1 21 0 250 216 0 0 chrX 53010491 53010542 -109589388 + L2 LINE L2 3263 3313 0 230 220 0 0 chrX 53010958 53011008 -109588922 + G-rich Low_complexity Low_complexity 4 53 0 339 203 68 127 chrX 53014847 53015083 -109584847 + MER102b DNA MER1_type 70 291 -50 1301 311 18 32 chrX 53015203 53016086 -109583844 - L2 LINE L2 -5 3308 2440 629 229 82 0 chrX 53016094 53016277 -109583653 + HERVL40 LTR ERVL 606 803 -4727 11960 209 39 41 chrX 53016277 53017978 -109581952 + HERVL40 LTR ERVL 1016 2707 -2823 2123 120 24 27 chrX 53017978 53018354 -109581576 + THE1C LTR MaLR 1 375 0 11960 209 39 41 chrX 53018354 53019582 -109580348 + HERVL40 LTR ERVL 2707 3937 -1593 2898 212 113 11 chrX 53019587 53020568 -109579362 - L1MB8 LINE L1 -6 6172 5106 2465 143 0 5 chrX 53020571 53020957 -109578973 - L1PA15 LINE L1 -2 6163 5780 7066 164 7 2 chrX 53021010 53023447 -109576483 - L1PB1 LINE L1 0 6867 4421 2110 168 20 43 chrX 53023453 53023893 -109576037 - LTR3 LTR ERVK -2 430 1 16510 112 18 2 chrX 53023893 53026440 -109573490 - HERVK3 LTR ERVK 0 7243 4657 1339 90 0 0 chrX 53026431 53026619 -109573311 - HERVK3 LTR ERVK -2937 4306 4119 * 13114 117 36 8 chrX 53026606 53029414 -109570516 - HERVK3 LTR ERVK -4333 2910 38 2211 170 7 37 chrX 53029433 53029862 -109570068 - LTR3 LTR ERVK -16 416 1 5090 199 69 3 chrX 53029863 53030352 -109569578 - L1PB1 LINE L1 -2437 4425 3970 260 100 0 20 chrX 53030352 53030402 -109569528 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5090 199 69 3 chrX 53030402 53032104 -109567826 - L1PB1 LINE L1 -2892 3970 2080 * 28375 116 17 58 chrX 53032084 53038496 -109561434 - L1PA7 LINE L1 -3 6151 12 957 115 23 0 chrX 53038509 53038683 -109561247 - L1PB1 LINE L1 -4756 2107 1930 1310 13 7 0 chrX 53038687 53038840 -109561090 - L1PA2 LINE L1 -10 6145 5992 2754 19 0 0 chrX 53038840 53039165 -109560765 + L1P1 LINE L1 5425 5749 -406 3007 182 77 7 chrX 53039174 53040827 -109559103 - L1PB1 LINE L1 -4946 1917 1 2805 141 21 11 chrX 53040850 53041406 -109558524 - L1P4 LINE L1 -392 6424 5863 593 282 31 14 chrX 53041403 53041690 -109558240 - L1P LINE L1 -3180 2966 2675 * 25056 81 8 2 chrX 53041700 53045254 -109554676 + L1P LINE L1 11 3587 -2559 209 164 36 0 chrX 53045290 53045345 -109554585 + (TA)n Simple_repeat Simple_repeat 1 57 0 14324 209 57 11 chrX 53045357 53050577 -109549353 - L1P4 LINE L1 -1329 5468 1 4669 205 20 25 chrX 53050596 53051245 -109548685 - L1PA15 LINE L1 -13 6152 5501 1690 213 0 0 chrX 53051245 53051555 -109548375 - AluJb SINE Alu -2 310 1 4669 205 20 25 chrX 53051555 53053161 -109546769 - L1PA15 LINE L1 -664 5501 3912 6654 47 1 0 chrX 53053387 53054230 -109545700 - L1PA5 LINE L1 -7 6147 5304 1176 32 0 0 chrX 53054226 53054380 -109545550 + L1PA5 LINE L1 5162 5315 -831 * 436 105 11 11 chrX 53054381 53054476 -109545454 + (TA)n Simple_repeat Simple_repeat 2 96 0 5113 131 18 50 chrX 53054479 53055774 -109544156 + L1PB2 LINE L1 4885 6151 0 3051 218 99 39 chrX 53055809 53056124 -109543806 + L1MD3 LINE L1 5138 5433 -713 2253 110 3 0 chrX 53056124 53056423 -109543507 + AluSp SINE Alu 14 313 0 3051 218 99 39 chrX 53056423 53056728 -109543202 + L1MD3 LINE L1 5433 4729 -1417 2132 131 0 0 chrX 53056728 53057025 -109542905 + AluSc SINE Alu 1 297 -12 3051 218 99 39 chrX 53057025 53057745 -109542185 + L1MD3 LINE L1 4728 5403 -743 2281 113 0 0 chrX 53057763 53058063 -109541867 + AluSg SINE Alu 1 300 -10 487 239 17 34 chrX 53058063 53058239 -109541691 + L1MD3 LINE L1 6908 7080 -915 258 345 7 22 chrX 53058324 53058463 -109541467 + MLT1J1 LTR MaLR 38 174 -272 1130 214 19 12 chrX 53058472 53058794 -109541136 + MER33 DNA MER1_type 1 324 0 476 291 19 75 chrX 53058826 53059094 -109540836 + MLT1J2 LTR MaLR 198 450 0 319 321 20 4 chrX 53059186 53059309 -109540621 - L2 LINE L2 -289 2983 2861 312 167 13 51 chrX 53059311 53059389 -109540541 + MER116 DNA Mariner 1 75 -5 2469 274 128 38 chrX 53059395 53060423 -109539507 - L2 LINE L2 -454 2860 1740 24 32 0 0 chrX 53060715 53060746 -109539184 + AT_rich Low_complexity Low_complexity 1 31 0 448 249 17 70 chrX 53065843 53066084 -109533846 + MER102a DNA MER1_type 98 325 -5 1086 292 18 30 chrX 53066167 53066745 -109533185 - L2 LINE L2 -115 3198 2633 345 314 128 50 chrX 53066769 53067246 -109532684 + L1M4 LINE L1 4820 5333 -813 336 321 52 38 chrX 53067311 53067523 -109532407 + L2 LINE L2 3097 3311 -2 3341 171 10 15 chrX 53067744 53068346 -109531584 - MER7C DNA MER2_type 0 602 4 1223 227 62 16 chrX 53068374 53068887 -109531043 + LTR40a LTR ERVL 44 515 -4 407 309 72 11 chrX 53068907 53069088 -109530842 + HERVL40 LTR ERVL 20 211 -5319 2196 278 84 19 chrX 53069117 53070309 -109529621 + HERVL40 LTR ERVL 1252 2552 -2978 847 117 73 0 chrX 53070326 53070505 -109529425 - L1MA7 LINE L1 0 6291 6100 678 263 23 55 chrX 53071687 53071904 -109528026 - MER63A DNA MER1_type 0 210 1 2159 109 14 0 chrX 53072602 53072896 -109527034 + AluSx SINE Alu 3 300 -12 17800 127 73 12 chrX 53073446 53074263 -109525667 + L1PA3 LINE L1 4 770 -5699 1904 155 6 28 chrX 53074263 53074580 -109525350 - AluSp SINE Alu -3 310 1 17800 127 73 12 chrX 53074580 53075501 -109524429 + L1PA3 LINE L1 770 1633 -4836 2144 110 0 14 chrX 53075501 53075793 -109524137 + AluY SINE Alu 1 288 -23 432 0 0 0 chrX 53075793 53075841 -109524089 + (CA)n Simple_repeat Simple_repeat 2 49 0 17800 127 73 12 chrX 53075841 53079406 -109520524 + L1PA3 LINE L1 1632 5790 -679 4608 104 5 0 chrX 53079427 53080092 -109519838 - L1PA7 LINE L1 -13 6141 5474 4562 76 2 0 chrX 53080092 53080691 -109519239 + L1PA3 LINE L1 5865 6467 -3 222 37 0 0 chrX 53080694 53080721 -109519209 + (A)n Simple_repeat Simple_repeat 1 27 0 23408 68 3 2 chrX 53080722 53083928 -109516002 - L1P LINE L1 -2938 3208 1 15850 110 10 2 chrX 53083929 53086594 -109513336 - L1PA7 LINE L1 -679 5475 2792 311 155 0 0 chrX 53086593 53086651 -109513279 - L1PA7 LINE L1 -4507 1639 1582 * 9861 116 7 2 chrX 53086651 53088109 -109511821 + HERVL-A2 LTR ERVL 1062 2526 -3128 * 17639 97 25 0 chrX 53088108 53090637 -109509293 + HERVL-A2 LTR ERVL 3064 5654 0 1805 170 63 31 chrX 53090637 53091175 -109508755 + MLT2A2 LTR ERVL 1 554 0 283 347 22 22 chrX 53091544 53091763 -109508167 + L1 LINE L1 439 1955 -5254 330 374 44 18 chrX 53091815 53092155 -109507775 + L1PBb LINE L1 57 405 -5799 1849 277 66 32 chrX 53092271 53092596 -109507334 + L1PBb LINE L1 401 713 -5490 2074 132 3 0 chrX 53092596 53092885 -109507045 + AluSx SINE Alu 12 301 -11 270 0 0 0 chrX 53092885 53092915 -109507015 + (TA)n Simple_repeat Simple_repeat 2 31 0 1849 277 66 32 chrX 53092915 53094286 -109505644 + L1PBb LINE L1 712 2135 -4068 19978 132 13 30 chrX 53094346 53098958 -109500972 + L1PA7 LINE L1 1 4629 -1832 6531 104 20 7 chrX 53098959 53100682 -109499248 + L1PA7 LINE L1 4726 6461 -8 1731 260 53 6 chrX 53100704 53101381 -109498549 + L1 LINE L1 3186 3894 -3314 19002 167 24 39 chrX 53101384 53105038 -109494892 + L1PA11 LINE L1 10 3717 -2772 2104 137 0 28 chrX 53105038 53105360 -109494570 + AluSq SINE Alu 1 313 0 19002 167 24 39 chrX 53105360 53106424 -109493506 + L1PA11 LINE L1 3717 4795 -1694 13661 63 64 1 chrX 53106424 53108918 -109491012 + L1PA6 LINE L1 3597 6147 -7 19002 167 24 39 chrX 53108918 53110728 -109489202 + L1PA11 LINE L1 4795 6464 -25 2825 191 12 11 chrX 53110726 53111365 -109488565 + L1P3 LINE L1 4829 5468 -993 * 4838 255 89 25 chrX 53111371 53114760 -109485170 + L1PA15-16 LINE L1 1809 5451 -1398 3800 99 2 0 chrX 53114762 53115315 -109484615 + L1PA12 LINE L1 5572 6125 -43 519 242 0 0 chrX 53115331 53115847 -109484083 + (TA)n Simple_repeat Simple_repeat 1 516 0 360 289 0 0 chrX 53115860 53115950 -109483980 + L1MC4 LINE L1 6614 6703 -1339 * 366 267 0 0 chrX 53115882 53115972 -109483958 - L1MC4 LINE L1 -1339 6703 6614 494 199 6 17 chrX 53116006 53116187 -109483743 + (TA)n Simple_repeat Simple_repeat 1 179 0 280 274 0 21 chrX 53116194 53116289 -109483641 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 3441 164 67 27 chrX 53116299 53117589 -109482341 + L1MA4A LINE L1 4748 6097 -206 388 233 0 0 chrX 53117615 53117701 -109482229 + AluJ/FRAM SINE Alu 217 302 0 1073 185 15 0 chrX 53117753 53117958 -109481972 + L1PB3 LINE L1 5947 6154 0 427 182 31 10 chrX 53118055 53118170 -109481760 + L1M LINE L1 5282 5403 -766 23181 50 2 0 chrX 53118296 53122051 -109477879 + L1PA4 LINE L1 2368 6154 -1 5138 118 26 33 chrX 53122055 53122131 -109477799 + L1MA3 LINE L1 2448 2523 -5042 2092 130 7 0 chrX 53122131 53122431 -109477499 + AluSx SINE Alu 1 302 -10 5138 118 26 33 chrX 53122431 53123345 -109476585 + L1MA3 LINE L1 2523 3431 -4134 4723 162 22 24 chrX 53123342 53123578 -109476352 + L1MA3 LINE L1 5698 5933 -1791 * 2087 116 0 0 chrX 53123578 53123855 -109476075 + AluSx SINE Alu 1 277 -35 243 0 0 0 chrX 53123856 53123883 -109476047 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 330 26 0 0 chrX 53123882 53123921 -109476009 + (TA)n Simple_repeat Simple_repeat 1 39 0 4723 162 22 24 chrX 53123883 53125152 -109474778 + L1MA3 LINE L1 5933 7163 -561 920 28 0 0 chrX 53125152 53125258 -109474672 + L1PA3 LINE L1 6044 6152 -3 4723 162 22 24 chrX 53125258 53125380 -109474550 + L1MA3 LINE L1 7163 7284 -440 457 295 119 0 chrX 56125382 56125575 -106474355 - LTR16C LTR ERVL -12 479 264 33252 65 3 8 chrX 56126643 56131245 -106468685 + L1PA8A LINE L1 739 5323 -808 2225 109 7 0 chrX 56131245 56131538 -106468392 + AluSx SINE Alu 1 295 -17 33252 65 3 8 chrX 56131538 56131712 -106468218 + L1PA8A LINE L1 5323 5496 -635 11626 160 46 32 chrX 56131834 56132254 -106467676 + L1MA3 LINE L1 1236 1649 -5916 612 81 0 0 chrX 56132254 56132341 -106467589 + (GA)n Simple_repeat Simple_repeat 2 88 0 11626 160 46 32 chrX 56132341 56135241 -106464689 + L1MA3 LINE L1 1649 4729 -2836 38419 69 3 4 chrX 56135241 56141402 -106458528 + L1PA5 LINE L1 1 6154 0 8749 181 21 1 chrX 56141391 56144352 -106455578 + L1MA3 LINE L1 4708 7724 0 * 4014 157 52 50 chrX 56144383 56144885 -106455045 + L1MA8 LINE L1 5316 5815 -476 189 0 0 0 chrX 56144885 56144906 -106455024 + (CA)n Simple_repeat Simple_repeat 2 22 0 4014 157 52 50 chrX 56144906 56145276 -106454654 + L1MA8 LINE L1 5815 6193 -98 455 33 16 0 chrX 56145276 56145337 -106454593 + (TA)n Simple_repeat Simple_repeat 2 63 0 4014 157 52 50 chrX 56145337 56145437 -106454493 + L1MA8 LINE L1 6193 6291 0 2048 114 0 0 chrX 56145849 56146157 -106453773 - AluSg SINE Alu 0 308 1 21 0 0 0 chrX 56146157 56146178 -106453752 + AT_rich Low_complexity Low_complexity 1 21 0 1967 202 44 26 chrX 56146712 56147208 -106452722 - MLT1D LTR MaLR 0 505 1 1949 141 0 24 chrX 56147388 56147686 -106452244 - AluSx SINE Alu -21 291 1 1768 175 31 33 chrX 56148392 56148848 -106451082 + LTR56 LTR ERV1 9 437 0 2576 50 0 0 chrX 56151362 56151660 -106448270 + AluY SINE Alu 1 298 -13 317 303 64 52 chrX 56151984 56152478 -106447452 + LTR56-int LTR ERV1 368 4267 -2824 180 0 0 0 chrX 56153967 56153987 -106445943 + (T)n Simple_repeat Simple_repeat 1 20 0 468 228 0 0 chrX 56154866 56154980 -106444950 + (TA)n Simple_repeat Simple_repeat 2 115 0 873 129 0 0 chrX 56155699 56155838 -106444092 + (TA)n Simple_repeat Simple_repeat 2 140 0 259 203 24 49 chrX 56156265 56156388 -106443542 + LTR56-int LTR ERV1 5721 5840 -918 627 258 19 50 chrX 56156429 56156689 -106443241 + LTR56-int LTR ERV1 4787 5038 -85 1785 197 28 14 chrX 56156818 56157254 -106442676 + LTR56 LTR ERV1 4 445 0 417 305 40 20 chrX 56158535 56158686 -106441244 + MIR3 SINE MIR 21 174 -34 192 345 126 0 chrX 56158775 56158862 -106441068 + L2 LINE L2 3183 3280 -33 216 0 0 0 chrX 56158960 56158984 -106440946 + (A)n Simple_repeat Simple_repeat 1 24 0 4393 19 0 0 chrX 56161153 56161759 -106438171 - L1PA2 LINE L1 -372 5783 5178 3165 8 0 0 chrX 56161759 56162160 -106437770 + L1PA2 LINE L1 5795 6196 0 41539 42 1 2 chrX 56162313 56168434 -106431496 + L1PA4 LINE L1 39 6154 -1 222 336 19 47 chrX 56168464 56168571 -106431359 + MIR3 SINE MIR 94 197 -11 235 273 28 63 chrX 56168916 56169059 -106430871 + MER117 DNA MER1_type 48 185 -12 3429 89 2 2 chrX 56169242 56169715 -106430215 - L1PA8 LINE L1 -14 6158 5686 319 376 64 6 chrX 56170000 56170173 -106429757 + L2 LINE L2 2872 3054 -218 21 0 0 0 chrX 56170393 56170414 -106429516 + AT_rich Low_complexity Low_complexity 1 21 0 398 353 0 0 chrX 56170695 56170811 -106429119 - L2 LINE L2 0 3272 3157 367 312 32 8 chrX 56170969 56171094 -106428836 - MIR SINE MIR -87 175 48 1284 106 32 9 chrX 56171219 56171436 -106428494 - L1MA4A LINE L1 0 6303 6082 441 155 126 0 chrX 56171436 56171539 -106428391 + L1MA4A LINE L1 5941 6056 -247 17861 172 33 14 chrX 56171701 56176214 -106423716 + L1MA1 LINE L1 12 4438 -3283 2201 105 3 13 chrX 56176214 56176544 -106423386 + AluSp SINE Alu 1 313 0 17861 172 33 14 chrX 56176544 56177318 -106422612 + L1MA1 LINE L1 4438 5196 -2525 1903 63 0 8 chrX 56177318 56177569 -106422361 + L1PA5 LINE L1 5903 6154 0 17861 172 33 14 chrX 56177569 56179845 -106420085 + L1MA1 LINE L1 5196 7721 0 19684 184 18 25 chrX 56179873 56184736 -106415194 + L1P3 LINE L1 10 4855 -1606 2634 7 0 0 chrX 56184736 56185068 -106414862 + L1PA2 LINE L1 5841 6174 0 19684 184 18 25 chrX 56185068 56185233 -106414697 + L1P3 LINE L1 4855 5020 -1441 893 181 0 0 chrX 56185227 56185409 -106414521 + L1PA15 LINE L1 2983 3164 -2982 * 6578 177 17 27 chrX 56185409 56185465 -106414465 + L1PA15 LINE L1 3725 3780 -2385 12132 136 7 10 chrX 56185465 56188259 -106411671 + L1PA10 LINE L1 3365 6163 -5 6578 177 17 27 chrX 56188259 56190660 -106409270 + L1PA15 LINE L1 3780 6157 -8 226 175 18 18 chrX 56190863 56190920 -106409010 + L1MC4 LINE L1 7985 8041 -1 24 53 0 0 chrX 56191249 56191287 -106408643 + AT_rich Low_complexity Low_complexity 1 38 0 477 302 126 14 chrX 56191434 56191656 -106408274 + MLT1I LTR MaLR 140 386 -23 14180 87 7 10 chrX 56191887 56194708 -106405222 - L1PA7 LINE L1 -3 6151 3336 394 278 78 74 chrX 56195471 56195599 -106404331 - L1MC4a LINE L1 -1868 5940 5814 2486 47 3 0 chrX 56195599 56195899 -106404031 - AluY SINE Alu -10 301 1 394 278 78 74 chrX 56195899 56196079 -106403851 - L1MC4a LINE L1 -1994 5814 5631 232 273 171 11 chrX 56196212 56196300 -106403630 - MIR SINE MIR 0 262 161 241 161 143 0 chrX 56196308 56196364 -106403566 + HsTC2 DNA Tc2 1 64 -1834 * 788 110 8 31 chrX 56196339 56196466 -106403464 + MER46A DNA MER2_type 112 235 -1 497 326 29 0 chrX 56196490 56196628 -106403302 - MIR SINE MIR -108 154 13 231 260 90 10 chrX 56196702 56196802 -106403128 + L1ME4a LINE L1 5984 6091 -30 732 189 105 34 chrX 56196807 56197103 -106402827 - L1MC5 LINE L1 -36 7925 7609 289 216 54 83 chrX 56197119 56199423 -106400507 - L1MD2 LINE L1 -10 7787 5583 * 508 179 94 9 chrX 56199420 56199526 -106400404 + L1MC4 LINE L1 6627 6741 -1301 1106 216 45 48 chrX 56199587 56199920 -106400010 - L1MC5 LINE L1 -381 7580 7249 23 0 0 0 chrX 56200046 56200069 -106399861 + AT_rich Low_complexity Low_complexity 1 23 0 837 167 0 7 chrX 56200415 56200553 -106399377 + MLT1A1 LTR MaLR 229 365 0 3168 157 19 19 chrX 56200918 56201547 -106398383 + L1MA4 LINE L1 5671 6299 -1 338 340 32 6 chrX 56201647 56201752 -106398178 - MIR SINE MIR -44 218 106 2019 126 0 3 chrX 56201752 56202045 -106397885 + AluJb SINE Alu 1 292 -20 338 340 32 6 chrX 56202045 56202095 -106397835 - MIR SINE MIR -156 106 59 271 301 82 5 chrX 56202134 56202340 -106397590 + L1ME3 LINE L1 5726 5947 -215 22 56 0 0 chrX 56202372 56202408 -106397522 + AT_rich Low_complexity Low_complexity 1 36 0 774 298 70 38 chrX 56202708 56203349 -106396581 - L1ME4a LINE L1 -90 6031 5347 1234 146 9 5 chrX 56203389 56203609 -106396321 - L1MA4 LINE L1 -9 6291 6071 184 273 0 36 chrX 56203630 56203685 -106396245 + MIR SINE MIR 17 69 -193 236 242 0 81 chrX 56204990 56205052 -106394878 + MIR SINE MIR 172 228 -34 730 224 104 37 chrX 56205249 56205490 -106394440 + MIR SINE MIR 1 257 -5 996 240 52 8 chrX 56205785 56206035 -106393895 + MER58 DNA MER1_type 3 263 -78 267 345 35 0 chrX 56206047 56206134 -106393796 + MLT1J LTR MaLR 334 423 -88 6942 59 12 1 chrX 56206921 56208419 -106391511 - L1PA8 LINE L1 -5 6167 4664 562 106 11 43 chrX 56208419 56208513 -106391417 - L1P LINE L1 -1238 4908 4818 5126 257 99 19 chrX 56208550 56211836 -106388094 + L1MB8 LINE L1 8 3582 -3062 1729 114 42 4 chrX 56211839 56212101 -106387829 + AluSx SINE Alu 41 312 0 4952 255 42 37 chrX 56212148 56215004 -106384926 + L1MB8 LINE L1 3807 6676 0 1374 257 36 64 chrX 56215258 56215931 -106383999 + L1M4 LINE L1 3742 4395 -1751 430 194 0 0 chrX 56215944 56216016 -106383914 - Tigger1 DNA MER2_type -2317 101 30 254 286 33 0 chrX 56216089 56216180 -106383750 + L1MB5 LINE L1 3342 3435 -2711 2230 37 0 0 chrX 56216180 56216449 -106383481 + L1PA3 LINE L1 5887 6155 0 3641 252 42 20 chrX 56216542 56217760 -106382170 + L1MB5 LINE L1 3729 4973 -1173 1342 236 52 31 chrX 56217760 56218179 -106381751 + MSTC LTR MaLR 1 428 0 2805 234 67 141 chrX 56218181 56218226 -106381704 + MSTC-int LTR MaLR 2 49 -1686 2516 107 26 0 chrX 56218226 56218609 -106381321 + L1PA10 LINE L1 5767 6159 -9 2805 234 67 141 chrX 56218609 56218785 -106381145 + MSTC-int LTR MaLR 49 237 -1498 5163 45 0 0 chrX 56218785 56219406 -106380524 + L1PA5 LINE L1 5530 6150 -4 2805 234 67 141 chrX 56219406 56220590 -106379340 + MSTC-int LTR MaLR 237 1303 -432 5131 226 18 18 chrX 56220665 56222287 -106377643 + L1PA13 LINE L1 1163 2789 -4008 3676 96 50 4 chrX 56222287 56222831 -106377099 - L1PA11 LINE L1 0 6174 5606 5131 226 18 18 chrX 56222831 56222892 -106377038 + L1PA13 LINE L1 2789 2849 -3948 1461 129 42 0 chrX 56222963 56223204 -106376726 + L1PA15 LINE L1 5909 6159 -6 1984 202 35 4 chrX 56223228 56223683 -106376247 + L1MB5 LINE L1 5694 6162 -12 436 350 79 10 chrX 56224037 56224240 -106375690 - MIR SINE MIR -37 225 9 2426 178 39 26 chrX 56224317 56224857 -106375073 - MER11A LTR ERVK 0 1266 720 183 333 115 13 chrX 56224885 56224963 -106374967 + L2 LINE L2 3137 3222 -50 325 261 63 9 chrX 56225260 56225371 -106374559 + MER5B DNA MER1_type 51 167 -11 * 579 308 37 28 chrX 56225362 56225576 -106374354 + L2 LINE L2 3093 3308 -5 2937 205 39 29 chrX 56225613 56226335 -106373595 + L1MB7 LINE L1 5319 6047 -137 3968 238 60 46 chrX 56229006 56229495 -106370435 - L1PA13 LINE L1 -5796 991 510 2393 78 7 3 chrX 56229495 56229803 -106370127 - AluY SINE Alu -2 309 1 3968 238 60 46 chrX 56229803 56230286 -106369644 - L1PA13 LINE L1 -6277 510 6 2924 174 18 0 chrX 56230301 56230859 -106369071 - L1PB4 LINE L1 -326 5830 5263 3031 209 27 15 chrX 56230863 56231592 -106368338 + L1PB4 LINE L1 4506 5243 -903 4533 177 29 17 chrX 56232653 56233572 -106366358 - L1MA7 LINE L1 -29 6262 5333 5341 124 13 13 chrX 56233700 56234399 -106365531 - L1PA13 LINE L1 0 6163 5486 2002 130 3 0 chrX 56234399 56234684 -106365246 + AluSp SINE Alu 1 286 -27 5341 124 13 13 chrX 56234684 56235002 -106364928 - L1PA13 LINE L1 -676 5487 5170 3547 179 30 1 chrX 56235003 56235695 -106364235 - L1PA13 LINE L1 -1036 5110 4399 526 161 0 0 chrX 56235702 56235789 -106364141 + L1MA4 LINE L1 4089 4175 -1971 276 234 0 0 chrX 56235818 56235882 -106364048 + L1PB4 LINE L1 6068 6131 -25 313 204 57 34 chrX 56235890 56235978 -106363952 - L1MC4 LINE L1 -1339 6703 6614 684 139 46 6 chrX 56235992 56236165 -106363765 + (TA)n Simple_repeat Simple_repeat 1 180 0 327 146 0 0 chrX 56236177 56236232 -106363698 + (TG)n Simple_repeat Simple_repeat 2 56 0 873 209 6 0 chrX 56236241 56236418 -106363512 + L1M1 LINE L1 5442 5619 -681 5160 192 24 12 chrX 56236477 56238551 -106361379 + L1MA4 LINE L1 4195 6294 -6 295 106 21 0 chrX 56238571 56238618 -106361312 - MER92A LTR ERV1 -84 328 281 2957 138 27 8 chrX 56238661 56239188 -106360742 - L1MA3 LINE L1 0 6305 5769 4923 167 19 22 chrX 56239189 56240355 -106359575 - L1PA13 LINE L1 -5 6158 4985 25286 31 2 2 chrX 56240355 56244206 -106355724 - L1PA2 LINE L1 -3 6152 2301 21760 49 49 3 chrX 56244308 56247126 -106352804 - L1P LINE L1 -3198 2948 4 2109 206 43 12 chrX 56247123 56247613 -106352317 - L1PA13 LINE L1 -1147 4999 4495 * 1626 178 47 25 chrX 56247613 56247978 -106351952 + THE1C LTR MaLR 1 373 -2 7786 154 70 40 chrX 56248001 56249514 -106350416 + THE1-int LTR MaLR 21 1580 0 4453 105 9 0 chrX 56249529 56250162 -106349768 + L1PA10 LINE L1 5470 6162 -6 909 123 14 0 chrX 56250162 56250306 -106349624 + L1PA10 LINE L1 6019 6166 -2 1818 243 28 33 chrX 56250328 56250928 -106349002 + L1 LINE L1 4325 4921 -1225 * 23945 86 1 6 chrX 56250924 56254225 -106345705 + L1PA4 LINE L1 2 3286 -2860 12739 43 1 0 chrX 56254225 56256572 -106343358 + L1PA4 LINE L1 3813 6155 0 186 43 0 0 chrX 56256668 56256691 -106343239 + (A)n Simple_repeat Simple_repeat 1 23 0 25 51 0 0 chrX 56256727 56256766 -106343164 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chrX 56256985 56257014 -106342916 + AT_rich Low_complexity Low_complexity 1 29 0 14905 146 17 105 chrX 56257077 56260502 -106339428 + L1P LINE L1 12 3132 -3014 6716 67 19 2 chrX 56260502 56261825 -106338105 + L1PA7 LINE L1 4815 6154 0 342 267 51 106 chrX 56261829 56261855 -106338075 + L1M4 LINE L1 3520 3546 -2600 1929 144 7 10 chrX 56261855 56262160 -106337770 - AluSx SINE Alu -3 309 6 342 267 51 106 chrX 56262160 56262406 -106337524 + L1M4 LINE L1 3546 3777 -2369 194 36 83 60 chrX 56262434 56262518 -106337412 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 272 144 48 29 chrX 56262553 56262657 -106337273 + (TTATA)n Simple_repeat Simple_repeat 2 107 0 374 262 101 7 chrX 56262673 56262822 -106337108 + L1ME3A LINE L1 4888 5050 -1096 322 216 52 90 chrX 56262822 56262956 -106336974 - MLT1H LTR MaLR 0 549 421 321 298 83 66 chrX 56262999 56263246 -106336684 - MLT1I LTR MaLR -197 212 33 247 254 0 0 chrX 56263269 56263328 -106336602 + L1ME3A LINE L1 5051 5109 -1037 350 229 305 0 chrX 56263443 56263574 -106336356 + L1ME3A LINE L1 5348 5518 -646 * 968 245 28 56 chrX 56263568 56263923 -106336007 + L1ME3A LINE L1 5820 6164 -6 1453 161 0 0 chrX 56264003 56264227 -106335703 - AluJb SINE Alu -19 293 70 272 278 26 9 chrX 56264237 56264352 -106335578 + L1M4 LINE L1 3829 3945 -2201 359 333 0 16 chrX 56264714 56264843 -106335087 - MER94 DNA DNA -3 131 5 2766 194 27 20 chrX 56264954 56265402 -106334528 - L1MC3 LINE L1 -21 7764 7310 1639 214 82 10 chrX 56265402 56265803 -106334127 + MSTB1 LTR MaLR 1 430 -2 2766 194 27 20 chrX 56265803 56265953 -106333977 - L1MC3 LINE L1 -475 7310 7162 * 13532 40 4 1 chrX 56265951 56267624 -106332306 - L1PA4 LINE L1 -850 5296 3619 6976 40 1 2 chrX 56267597 56268444 -106331486 + L1PA4 LINE L1 5310 6155 0 * 257 316 20 41 chrX 56268527 56268625 -106331305 + MIR SINE MIR 56 151 -57 23 33 0 0 chrX 56268712 56268742 -106331188 + AT_rich Low_complexity Low_complexity 1 30 0 440 242 0 0 chrX 56268742 56268833 -106331097 - L1MC3 LINE L1 -615 7170 7080 229 251 146 18 chrX 56269069 56269240 -106330690 - L1 LINE L1 -1672 4474 4282 350 69 0 35 chrX 56269330 56269388 -106330542 - MLT2A1 LTR ERVL 0 444 389 37 0 0 0 chrX 56269388 56269425 -106330505 + AT_rich Low_complexity Low_complexity 1 37 0 445 38 119 6 chrX 56269425 56269585 -106330345 + (TA)n Simple_repeat Simple_repeat 2 179 0 340 92 99 0 chrX 56269597 56269839 -106330091 + (TA)n Simple_repeat Simple_repeat 1 266 0 570 202 34 0 chrX 56269839 56269958 -106329972 + FRAM SINE Alu 43 165 -11 246 214 143 0 chrX 56270001 56270085 -106329845 - L1MC4 LINE L1 -1330 6712 6617 * 253 289 22 0 chrX 56270014 56270104 -106329826 + L1MC4 LINE L1 6614 6705 -1337 326 73 0 36 chrX 56270108 56270163 -106329767 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 270 239 0 22 chrX 56270164 56270256 -106329674 + L1MC4 LINE L1 6614 6703 -1339 257 247 0 43 chrX 56270228 56270321 -106329609 - L1MC4 LINE L1 -1339 6703 6615 * 230 232 0 63 chrX 56270271 56270366 -106329564 + L1MC4 LINE L1 6615 6703 -1339 * 648 244 0 0 chrX 56270379 56270559 -106329371 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 186 34 0 chrX 56270563 56270622 -106329308 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 253 267 0 22 chrX 56270622 56270712 -106329218 + L1MC4 LINE L1 6614 6701 -1341 230 255 0 43 chrX 56270680 56270774 -106329156 - L1MC4 LINE L1 -1339 6703 6614 * 233 217 22 43 chrX 56270795 56270887 -106329043 + L1MC4 LINE L1 6614 6703 -1339 253 98 0 0 chrX 56270889 56270930 -106329000 - MLT2A1 LTR ERVL -44 400 360 203 194 0 0 chrX 56270930 56270966 -106328964 + (TA)n Simple_repeat Simple_repeat 2 37 0 3174 65 0 2 chrX 56270967 56271365 -106328565 - MLT2A1 LTR ERVL -45 399 3 16913 74 3 3 chrX 56271367 56274623 -106325307 - HERVL-A1 LTR ERVL 0 5654 2401 753 82 0 0 chrX 56274638 56274736 -106325194 - MLT2A1 LTR ERVL -346 98 1 17557 79 41 6 chrX 56274782 56277111 -106322819 - HERVL-A1 LTR ERVL -3242 2412 2 348 77 0 154 chrX 56277112 56277177 -106322753 - MLT2A2 LTR ERVL 0 453 390 244 156 0 0 chrX 56277154 56277199 -106322731 + LTR66 LTR ERVL 394 438 -172 * 231 167 0 0 chrX 56277199 56277241 -106322689 + (CA)n Simple_repeat Simple_repeat 1 42 0 3200 79 2 0 chrX 56277242 56277645 -106322285 - MLT2A1 LTR ERVL -40 404 1 324 0 0 0 chrX 56278814 56278850 -106321080 + (CA)n Simple_repeat Simple_repeat 2 37 0 498 124 0 0 chrX 56281752 56281841 -106318089 + (TG)n Simple_repeat Simple_repeat 2 90 0 30 27 0 0 chrX 56281879 56281916 -106318014 + AT_rich Low_complexity Low_complexity 1 37 0 452 310 26 15 chrX 56282351 56282489 -106317441 - MIR SINE MIR -67 141 20 1329 93 27 67 chrX 56283289 56283514 -106316416 - L1MD1 LINE L1 -16 6226 6011 4532 123 15 0 chrX 56283514 56284169 -106315761 + L1MA4 LINE L1 5617 6299 -1 668 250 54 5 chrX 56284170 56284354 -106315576 - L1M4 LINE L1 -1284 4862 4670 2304 115 0 0 chrX 56284975 56285287 -106314643 + AluSq SINE Alu 1 312 -1 3365 89 27 18 chrX 56285608 56286057 -106313873 + MLT2A2 LTR ERVL 1 453 0 283 290 47 0 chrX 56286868 56286975 -106312955 + MIR SINE MIR 98 209 -53 2154 89 43 0 chrX 56287266 56287546 -106312384 - AluSc SINE Alu -13 296 5 383 235 80 93 chrX 56287991 56288293 -106311637 + L1ME LINE L1 5526 5823 -298 246 340 37 16 chrX 56288452 56288643 -106311287 + HAL1 LINE L1 1332 1526 -981 1694 171 0 48 chrX 56288668 56288978 -106310952 - AluJo SINE Alu -15 297 3 341 275 49 0 chrX 56288981 56289123 -106310807 + L1ME4a LINE L1 2869 3017 -3129 17036 35 0 0 chrX 56289130 56291820 -106308110 - L1PA4 LINE L1 0 6155 3469 16107 41 6 0 chrX 56291820 56293791 -106306139 + L1P LINE L1 1452 3434 -2712 228 296 84 30 chrX 56293875 56293985 -106305945 + L1ME4a LINE L1 3099 3202 -2944 4291 145 49 1 chrX 56293985 56294701 -106305229 + L1MA4 LINE L1 5546 6295 -5 228 296 84 30 chrX 56294701 56294925 -106305005 + L1ME4a LINE L1 3202 3451 -2695 590 280 123 50 chrX 56295053 56296152 -106303778 + L1ME4a LINE L1 4579 5772 -349 2235 145 18 0 chrX 56296152 56296490 -106303440 - MER2 DNA MER2_type 0 344 1 590 280 123 50 chrX 56296490 56296537 -106303393 + L1ME4a LINE L1 5772 5814 -307 650 254 71 88 chrX 56296540 56296637 -106303293 + MLT2C1 LTR ERVL 1 98 -366 2269 116 143 13 chrX 56296637 56297016 -106302914 + MSTA LTR MaLR 1 428 0 650 254 71 88 chrX 56297016 56297413 -106302517 + MLT2C1 LTR ERVL 98 464 0 309 242 69 79 chrX 56297445 56297722 -106302208 + L1ME4a LINE L1 5848 6121 0 291 218 80 99 chrX 56297760 56298072 -106301858 + L1ME4a LINE L1 5816 6121 0 198 143 0 0 chrX 56300386 56300421 -106299509 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 208 303 0 15 chrX 56300670 56300736 -106299194 + GA-rich Low_complexity Low_complexity 2 66 0 442 320 63 11 chrX 56302316 56302491 -106297439 + MIR SINE MIR 20 203 -59 192 279 33 16 chrX 56303561 56303622 -106296308 + L2 LINE L2 3200 3261 -52 619 249 73 94 chrX 56303687 56303826 -106296104 - MIR SINE MIR -21 241 108 4415 137 3 2 chrX 56303826 56304467 -106295463 + L1PA15 LINE L1 5522 6163 -2 619 249 73 94 chrX 56304467 56304572 -106295358 - MIR SINE MIR -154 108 2 639 245 142 26 chrX 56304632 56304865 -106295065 - MIR SINE MIR -2 260 1 300 305 37 32 chrX 56304888 56305059 -106294871 - MIR SINE MIR -62 146 11 279 114 0 0 chrX 56305647 56305691 -106294239 + (TC)n Simple_repeat Simple_repeat 2 45 0 399 324 23 58 chrX 56305804 56305977 -106293953 - L3 LINE CR1 -12 1565 1399 610 345 36 14 chrX 56306001 56306221 -106293709 - MIR SINE MIR -33 229 5 269 383 109 8 chrX 56306200 56306456 -106293474 - L3 LINE CR1 -1062 515 234 * 999 235 28 28 chrX 56306458 56306713 -106293217 + MIR SINE MIR 6 260 -2 26 50 0 0 chrX 56307261 56307301 -106292629 + AT_rich Low_complexity Low_complexity 1 40 0 258 244 0 105 chrX 56307415 56307501 -106292429 + MER96B DNA MER1_type? 337 413 -4 276 127 0 0 chrX 56310201 56310256 -106289674 + (TC)n Simple_repeat Simple_repeat 2 56 0 492 99 0 0 chrX 56310308 56310323 -106289607 + (CA)n Simple_repeat Simple_repeat 1 86 0 492 99 0 0 chrX 56310323 56310394 -106289536 + (CA)n Simple_repeat Simple_repeat 2 72 0 229 291 0 0 chrX 56310853 56310908 -106289022 - L2 LINE L2 -80 3233 3179 426 325 81 29 chrX 56311030 56311276 -106288654 - MIR SINE MIR -3 259 1 1954 152 0 13 chrX 56312040 56312343 -106287587 - AluSx SINE Alu -12 300 2 680 246 18 11 chrX 56312413 56312605 -106287325 + MIR SINE MIR 66 259 -3 216 281 319 15 chrX 56312660 56312795 -106287135 - MIR SINE MIR -84 178 3 334 226 85 104 chrX 56312891 56313055 -106286875 + MIR SINE MIR 47 207 -55 202 292 0 0 chrX 56313264 56313312 -106286618 + L2 LINE L2 3188 3235 -37 1194 241 117 47 chrX 56313323 56313871 -106286059 + L2 LINE L2 2699 3303 -10 371 216 57 23 chrX 56315476 56315564 -106284366 + MIR SINE MIR 32 122 -86 2167 160 34 17 chrX 56315888 56316245 -106283685 + MLT1A1 LTR MaLR 1 363 -2 183 281 90 45 chrX 56316684 56316773 -106283157 - MIR3 SINE MIR -9 199 107 416 347 7 0 chrX 56317747 56317894 -106282036 - L3b LINE CR1 -141 1442 1295 1196 274 52 52 chrX 56318129 56318302 -106281628 + MLT1J LTR MaLR 13 185 -326 4083 110 49 4 chrX 56318302 56318857 -106281073 - LTR19B LTR ERV1 0 580 1 1196 274 52 52 chrX 56318857 56319142 -106280788 + MLT1J LTR MaLR 184 471 -40 727 262 65 22 chrX 56319300 56319529 -106280401 + MIR SINE MIR 3 241 -21 228 264 92 23 chrX 56320123 56320210 -106279720 - L3 LINE CR1 -124 1453 1361 428 310 39 35 chrX 56320247 56320450 -106279480 - L3 LINE CR1 -621 956 753 970 208 99 10 chrX 56320670 56320862 -106279068 - MER3 DNA MER1_type 0 209 1 349 176 148 46 chrX 56323144 56323252 -106276678 + L1MC4 LINE L1 7922 8040 -2 1759 238 43 5 chrX 56323472 56324031 -106275899 + L1ME1 LINE L1 3848 4427 -1719 614 358 24 24 chrX 56324040 56324465 -106275465 + L1MB3 LINE L1 5 429 -5712 261 0 0 0 chrX 56324774 56324803 -106275127 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9002 191 53 42 chrX 56325206 56326041 -106273889 + L1MB3 LINE L1 2749 3573 -2803 378 0 0 0 chrX 56326041 56326083 -106273847 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 9002 191 53 42 chrX 56326083 56326140 -106273790 + L1MB3 LINE L1 3573 3628 -2748 2439 69 7 3 chrX 56326140 56326445 -106273485 + AluY SINE Alu 1 306 -5 9002 191 53 42 chrX 56326445 56329144 -106270786 + L1MB3 LINE L1 3628 6335 -41 1897 225 85 36 chrX 56329189 56329883 -106270047 + L1ME1 LINE L1 4450 5177 -969 * 2690 155 29 5 chrX 56329879 56330471 -106269459 + L1MA4A LINE L1 5595 6277 -26 472 191 36 0 chrX 56330476 56330586 -106269344 + L1ME1 LINE L1 5175 5288 -858 14249 178 31 36 chrX 56330596 56332477 -106267453 + L1MA4 LINE L1 14 1903 -4579 1621 117 0 5 chrX 56332477 56332700 -106267230 + AluSg/x SINE Alu 82 303 -9 14249 178 31 36 chrX 56332700 56337262 -106262668 + L1MA4 LINE L1 1903 6434 -48 2011 119 0 7 chrX 56337262 56337539 -106262391 + AluSg SINE Alu 24 298 -12 14249 178 31 36 chrX 56337539 56337577 -106262353 + L1MA4 LINE L1 6434 6471 -11 3445 202 29 42 chrX 56337585 56337806 -106262124 + L1ME1 LINE L1 5272 5494 -840 2100 136 0 13 chrX 56337806 56338107 -106261823 + AluSx SINE Alu 1 297 -15 3445 202 29 42 chrX 56338107 56338797 -106261133 + L1ME1 LINE L1 5494 6331 -3 254 312 14 14 chrX 56338846 56338987 -106260943 + L1 LINE L1 3764 3904 -2242 256 342 54 7 chrX 56339149 56339298 -106260632 - L1ME LINE L1 -463 5699 5544 2879 181 7 43 chrX 56339299 56339880 -106260050 + MER68 LTR ERV1 3 562 0 21 57 0 0 chrX 56339971 56340006 -106259924 + AT_rich Low_complexity Low_complexity 1 35 0 309 245 95 48 chrX 56340063 56340210 -106259720 - MIR3 SINE MIR -31 177 24 318 255 99 43 chrX 56341055 56341196 -106258734 - MIR SINE MIR -54 208 60 287 111 0 16 chrX 56341802 56341865 -106258065 + (TA)n Simple_repeat Simple_repeat 1 62 0 382 242 93 22 chrX 56343413 56343595 -106256335 + L1ME4a LINE L1 5749 5943 -178 449 349 53 32 chrX 56344174 56344458 -106255472 + L3 LINE CR1 930 1219 -358 312 291 38 0 chrX 56344963 56345042 -106254888 + MIR3 SINE MIR 113 194 -14 328 340 52 0 chrX 56345132 56345229 -106254701 + L2 LINE L2 3168 3269 -3 341 202 44 29 chrX 56345341 56345507 -106254423 + L1P LINE L1 5170 5341 -805 284 313 154 28 chrX 56345752 56345934 -106253996 + L3b LINE CR1 1309 1513 -70 195 220 34 34 chrX 56346202 56346261 -106253669 + MIR3 SINE MIR 126 184 -24 461 326 47 16 chrX 56346529 56346722 -106253208 - MIR3 SINE MIR -3 205 7 196 320 57 33 chrX 56347076 56347198 -106252732 + MIR SINE MIR 67 191 -71 1451 267 39 33 chrX 56347267 56347899 -106252031 - L2 LINE L2 -9 3304 2662 574 236 166 13 chrX 56347951 56348108 -106251822 - MER5A DNA MER1_type 0 189 9 214 220 20 0 chrX 56348123 56348173 -106251757 + L2 LINE L2 3221 3271 -1 844 254 0 19 chrX 56348676 56348889 -106251041 - MER3 DNA MER1_type 0 209 1 405 0 0 0 chrX 56349057 56349102 -106250828 + (TG)n Simple_repeat Simple_repeat 2 46 0 456 350 28 6 chrX 56349393 56349573 -106250357 + MER5A DNA MER1_type 6 189 0 787 252 115 0 chrX 56350689 56350907 -106249023 - MIR SINE MIR -13 249 7 216 0 0 0 chrX 56351061 56351085 -106248845 + (A)n Simple_repeat Simple_repeat 1 24 0 399 227 109 17 chrX 56352429 56352548 -106247382 - L2 LINE L2 0 3313 3184 6054 193 41 26 chrX 56353722 56356136 -106243794 + L1MB3 LINE L1 3253 5806 -378 582 85 143 79 chrX 56356112 56356301 -106243629 + L1MA7 LINE L1 6087 6287 -4 * 675 144 0 0 chrX 56356313 56356424 -106243506 + L1MB7 LINE L1 6052 6162 -22 447 279 41 76 chrX 56356961 56357158 -106242772 - L3 LINE CR1 -3 1574 1385 312 27 0 0 chrX 56357397 56357434 -106242496 + (CA)n Simple_repeat Simple_repeat 1 37 0 333 345 7 7 chrX 56357591 56357730 -106242200 + L3b LINE CR1 1230 1368 -215 250 270 11 56 chrX 56358048 56358137 -106241793 - MIR SINE MIR -70 192 108 682 253 51 63 chrX 56358205 56358442 -106241488 + MIR SINE MIR 1 234 -28 632 207 69 5 chrX 56359514 56359702 -106240228 + L1MB3 LINE L1 5984 6183 0 1876 174 3 7 chrX 56359706 56360016 -106239914 + AluJo SINE Alu 1 309 -3 348 317 10 10 chrX 56360027 56360131 -106239799 - MIR3 SINE MIR -24 184 81 613 294 110 14 chrX 56361400 56361618 -106238312 - MIR SINE MIR -4 258 20 324 317 59 0 chrX 56361638 56361739 -106238191 + L3 LINE CR1 1331 1437 -140 196 221 44 59 chrX 56362519 56362587 -106237343 + L3 LINE CR1 1504 1570 -7 358 328 35 31 chrX 56363163 56363392 -106236538 + L1M4 LINE L1 4 233 -6309 1494 256 27 45 chrX 56363735 56364294 -106235636 + L1M4 LINE L1 627 1175 -5367 443 281 16 25 chrX 56364311 56364432 -106235498 + MIR SINE MIR 34 153 -55 653 249 25 69 chrX 56364474 56364791 -106235139 + MER102b DNA MER1_type 39 341 0 213 154 0 0 chrX 56365580 56365619 -106234311 + (CA)n Simple_repeat Simple_repeat 2 40 0 233 390 48 9 chrX 56365776 56365881 -106234049 - MIR SINE MIR -62 146 38 239 245 0 0 chrX 56366121 56366174 -106233756 + MER5B DNA MER1_type 125 177 -1 196 295 0 16 chrX 56366449 56366510 -106233420 - MIR SINE MIR -119 143 84 286 263 18 35 chrX 56366899 56367013 -106232917 + GA-rich Low_complexity Low_complexity 2 113 0 187 240 140 60 chrX 56367014 56367114 -106232816 - MIR3 SINE MIR -11 197 90 240 204 20 0 chrX 56368834 56368883 -106231047 + (CA)n Simple_repeat Simple_repeat 1 50 0 372 271 48 72 chrX 56369069 56369140 -106230790 - MIR SINE MIR -41 221 150 216 0 0 0 chrX 56369140 56369164 -106230766 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 2140 119 0 3 chrX 56369164 56369457 -106230473 - AluSx SINE Alu -20 292 1 372 271 48 72 chrX 56369457 56369550 -106230380 - MIR SINE MIR -110 152 60 347 328 16 8 chrX 56369718 56369843 -106230087 - L3b LINE CR1 -199 1384 1259 337 255 137 0 chrX 56370291 56370393 -106229537 - MIR3 SINE MIR -6 202 87 989 246 30 8 chrX 56370540 56370776 -106229154 - MIR SINE MIR -20 242 2 270 209 0 75 chrX 56370777 56370844 -106229086 + MIR SINE MIR 111 172 -90 324 237 68 34 chrX 56371438 56371556 -106228374 + MIR SINE MIR 106 227 -35 219 308 92 23 chrX 56373117 56373247 -106226683 - MIR SINE MIR -109 153 15 766 192 7 13 chrX 56373331 56373482 -106226448 - MER5A DNA MER1_type -39 150 1 442 259 0 52 chrX 56374318 56374370 -106225560 + MIR3 SINE MIR 67 120 -88 2393 97 0 3 chrX 56374370 56374678 -106225252 - AluSx SINE Alu -5 307 1 442 259 0 52 chrX 56374678 56374760 -106225170 + MIR3 SINE MIR 120 194 -14 317 250 52 43 chrX 56379333 56379449 -106220481 - MIR3 SINE MIR -47 161 45 248 225 60 41 chrX 56379522 56379668 -106220262 + L1MA9 LINE L1 6137 6291 0 201 326 35 0 chrX 56380070 56380156 -106219774 + MIR SINE MIR 32 120 -88 502 259 239 15 chrX 56380731 56380936 -106218994 - MIR SINE MIR 0 262 12 279 258 43 11 chrX 56381129 56381222 -106218708 + L1MC4a LINE L1 6074 6169 -1639 374 302 7 36 chrX 56382337 56382476 -106217454 + MIR3 SINE MIR 9 143 -65 210 324 49 10 chrX 56383326 56383428 -106216502 - MIR SINE MIR -67 141 36 212 341 55 0 chrX 56385052 56385143 -106214787 + MIR3 SINE MIR 85 180 -28 1847 123 119 0 chrX 56385767 56386044 -106213886 + AluSx SINE Alu 1 310 -2 217 234 28 50 chrX 56386136 56386245 -106213685 + MIR SINE MIR 49 153 -109 196 191 0 21 chrX 56386942 56386989 -106212941 - L2 LINE L2 -2 3311 3266 287 330 20 0 chrX 56387160 56387260 -106212670 + MIR3 SINE MIR 53 154 -54 217 292 0 42 chrX 56387399 56387471 -106212459 + MIR SINE MIR 124 192 -70 220 309 0 0 chrX 56388411 56388482 -106211448 + MIR SINE MIR 76 146 -62 331 303 19 12 chrX 56388813 56388975 -106210955 - MIR3 SINE MIR -43 165 3 220 232 0 152 chrX 56389306 56389418 -106210512 + MIR SINE MIR 36 130 -78 418 298 7 35 chrX 56389937 56390078 -106209852 - MIR3 SINE MIR -1 207 71 472 219 56 56 chrX 56390359 56390537 -106209393 + MER5B DNA MER1_type 1 178 0 469 359 113 31 chrX 56390644 56391226 -106208704 + L3 LINE CR1 180 809 -768 468 249 0 92 chrX 56391435 56391620 -106208310 + MER5B DNA MER1_type 8 175 -3 242 372 69 7 chrX 56391625 56391770 -106208160 + L3 LINE CR1 986 1139 -438 2435 84 3 0 chrX 56392035 56392344 -106207586 - AluSx SINE Alu -2 310 1 239 272 0 54 chrX 56392435 56392527 -106207403 + MIR SINE MIR 106 192 -70 228 309 11 21 chrX 56394067 56394161 -106205769 + GA-rich Low_complexity Low_complexity 2 94 0 183 276 67 30 chrX 56395041 56395175 -106204755 - MIR3 SINE MIR -3 205 67 216 0 0 0 chrX 56395180 56395204 -106204726 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 200 235 15 0 chrX 56398296 56398364 -106201566 + GA-rich Low_complexity Low_complexity 1 69 0 340 285 20 60 chrX 56398831 56398982 -106200948 + MIR3 SINE MIR 12 156 -52 1686 131 43 0 chrX 56399133 56399415 -106200515 + L1MB7 LINE L1 5639 5932 -252 580 259 0 0 chrX 56399415 56399546 -106200384 - MER112 DNA MER1_type -128 132 2 306 358 80 32 chrX 56399644 56400046 -106199884 + L2 LINE L2 1802 2222 -1092 225 333 59 47 chrX 56400156 56400495 -106199435 + L2 LINE L2 2261 2603 -711 370 262 69 7 chrX 56401111 56401256 -106198674 + LTR67 LTR ERVL 404 557 0 610 295 101 64 chrX 56401259 56401783 -106198147 + L2 LINE L2 2727 3272 0 318 313 0 0 chrX 56401892 56401975 -106197955 - MIR SINE MIR -92 116 34 492 225 25 19 chrX 56402181 56402341 -106197589 - L3 LINE CR1 -45 1532 1372 1248 204 8 34 chrX 56402483 56402748 -106197182 - MIR SINE MIR 0 262 5 211 352 93 14 chrX 56403536 56403752 -106196178 - MIR SINE MIR -10 252 20 193 265 0 0 chrX 56404051 56404100 -106195830 - MIR SINE MIR -157 105 57 * 509 245 123 0 chrX 56404097 56404260 -106195670 + L2 LINE L2 3131 3313 0 180 77 0 0 chrX 56404265 56404291 -106195639 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 207 194 0 0 chrX 56405111 56405147 -106194783 + (TAGG)n Simple_repeat Simple_repeat 1 36 0 312 228 38 0 chrX 56405414 56405493 -106194437 + L1MC4a LINE L1 5816 5897 -1911 522 90 0 0 chrX 56405495 56405562 -106194368 + Tigger2 DNA MER2_type 3 69 -2649 * 2766 132 14 20 chrX 56405552 56405998 -106193932 + Tigger2 DNA MER2_type 2273 2715 -3 288 276 103 0 chrX 56406002 56406147 -106193783 + L1MC4a LINE L1 5897 6056 -1752 33 25 0 0 chrX 56406176 56406216 -106193714 + AT_rich Low_complexity Low_complexity 1 40 0 201 162 27 0 chrX 56406245 56406282 -106193648 + CT-rich Low_complexity Low_complexity 5 42 0 535 295 7 0 chrX 56406336 56406485 -106193445 + MIR SINE MIR 5 154 -108 430 225 183 0 chrX 56406532 56406652 -106193278 + MIR SINE MIR 109 250 -12 306 215 86 21 chrX 56406686 56406779 -106193151 + MIR SINE MIR 82 180 -82 6565 81 21 1 chrX 56406844 56407798 -106192132 + L1PA11 LINE L1 5203 6174 0 23 0 0 0 chrX 56408200 56408223 -106191707 + AT_rich Low_complexity Low_complexity 1 23 0 441 259 39 91 chrX 56408839 56409071 -106190859 + L2 LINE L2 3094 3313 0 387 213 11 11 chrX 56410415 56410509 -106189421 + MIR SINE MIR 148 241 -21 278 295 179 6 chrX 56410646 56410802 -106189128 + MIR SINE MIR 30 212 -50 4173 115 10 0 chrX 56410802 56411403 -106188527 - L1PB3 LINE L1 0 6154 5548 1641 174 30 46 chrX 56411405 56411773 -106188157 + THE1B LTR MaLR 3 364 0 8675 172 22 19 chrX 56411773 56413423 -106186507 + THE1B-int LTR MaLR 1 1651 0 1778 154 35 49 chrX 56413423 56413792 -106186138 + THE1B LTR MaLR 1 364 0 1337 108 5 0 chrX 56413793 56413987 -106185943 - L1P5 LINE L1 -603 5551 5357 528 210 25 136 chrX 56414047 56414207 -106185723 - MIR SINE MIR 0 262 136 2078 159 26 52 chrX 56414207 56414388 -106185542 + MLT2D LTR ERVL 3 187 -227 2044 150 0 0 chrX 56414388 56414681 -106185249 - AluSx SINE Alu -19 293 1 2078 159 26 52 chrX 56414681 56414920 -106185010 + MLT2D LTR ERVL 187 412 -2 528 210 25 136 chrX 56414920 56415002 -106184928 - MIR SINE MIR -126 136 47 242 336 200 14 chrX 56414988 56415268 -106184662 + L2 LINE L2 2442 2773 -541 * 931 279 8 0 chrX 56415269 56415506 -106184424 - MIR SINE MIR -21 241 3 479 291 25 25 chrX 56415506 56415707 -106184223 + L2 LINE L2 2761 2961 -353 341 318 6 56 chrX 56416400 56416458 -106183472 - MIR SINE MIR -56 206 147 2077 204 36 46 chrX 56416458 56416927 -106183003 + MLT2B1 LTR ERVL 1 466 -54 462 36 0 0 chrX 56416927 56416983 -106182947 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2077 204 36 46 chrX 56416983 56417038 -106182892 + MLT2B1 LTR ERVL 466 520 0 341 318 6 56 chrX 56417038 56417158 -106182772 - MIR SINE MIR -115 147 37 6210 107 4 11 chrX 56417593 56418727 -106181203 + L1PA15 LINE L1 5029 6164 -1 1642 164 71 19 chrX 56419145 56419469 -106180461 - MER58B DNA MER1_type 0 341 1 199 245 41 0 chrX 56419473 56419522 -106180408 + MIR3 SINE MIR 144 194 -14 234 231 46 92 chrX 56419763 56419893 -106180037 + L2 LINE L2 2263 2386 -928 2830 96 5 8 chrX 56419940 56420316 -106179614 - THE1C LTR MaLR 0 375 1 9022 127 15 66 chrX 56420316 56422126 -106177804 - THE1C-int LTR MaLR 0 1580 3 2463 133 11 11 chrX 56422128 56422490 -106177440 - THE1B LTR MaLR 0 364 3 1302 271 65 44 chrX 56422701 56423181 -106176749 + MLT1J LTR MaLR 3 492 -19 3227 207 86 25 chrX 56423321 56423497 -106176433 + MER97a DNA MER1_type 3 167 -727 193 29 59 0 chrX 56423497 56423531 -106176399 + (CAA)n Simple_repeat Simple_repeat 2 37 0 3227 207 86 25 chrX 56423531 56424193 -106175737 + MER97a DNA MER1_type 167 892 -2 949 285 189 13 chrX 56424485 56425134 -106174796 + L2 LINE L2 2559 3313 0 197 340 60 33 chrX 56425110 56425260 -106174670 - MIR SINE MIR -58 204 51 * 276 280 280 8 chrX 56425681 56425813 -106174117 - MIR3 SINE MIR -8 200 33 2016 92 67 0 chrX 56426155 56426437 -106173493 - AluSp SINE Alu -12 301 1 487 268 112 17 chrX 56426537 56426716 -106173214 + MIR3 SINE MIR 7 202 -6 306 285 85 15 chrX 56428611 56428741 -106171189 - MIR SINE MIR -40 222 84 307 242 95 49 chrX 56429062 56429221 -106170709 - MIR SINE MIR -64 198 38 540 228 141 7 chrX 56429420 56429569 -106170361 + L3 LINE CR1 1391 1559 -18 495 101 76 0 chrX 56429833 56429912 -106170018 + MLT1B LTR MaLR 1 85 -305 * 1018 133 21 43 chrX 56429895 56430083 -106169847 + MLT1B LTR MaLR 207 390 0 228 259 35 0 chrX 56430163 56430221 -106169709 + L2 LINE L2 3246 3305 -8 472 167 178 63 chrX 56430231 56430405 -106169525 - L2 LINE L2 0 3313 3120 1163 290 137 17 chrX 56430455 56430921 -106169009 - LTR33A LTR ERVL 0 523 2 446 276 164 51 chrX 56431082 56431296 -106168634 + MIR SINE MIR 6 243 -19 594 280 22 22 chrX 56431529 56431711 -106168219 - MIR3 SINE MIR 0 208 27 2262 282 121 45 chrX 56431853 56433394 -106166536 - L2 LINE L2 0 3313 1653 584 247 156 7 chrX 56433429 56433583 -106166347 + MER5A DNA MER1_type 13 189 0 535 260 115 59 chrX 56433588 56433886 -106166044 - L2 LINE L2 -1696 1618 1304 1055 202 0 0 chrX 56433886 56434064 -106165866 - MER5B DNA MER1_type 0 178 1 988 317 104 50 chrX 56434197 56434844 -106165086 - L2 LINE L2 -2062 1252 571 * 1105 322 53 19 chrX 56434838 56435313 -106164617 - L2 LINE L2 -11 3302 2812 536 253 167 0 chrX 56435584 56435734 -106164196 + MER5A DNA MER1_type 9 183 -6 412 262 29 0 chrX 56436665 56436768 -106163162 + L3 LINE CR1 1432 1537 -40 216 278 206 10 chrX 56436824 56436921 -106163009 + MIR3 SINE MIR 71 186 -22 573 250 9 97 chrX 56437147 56437363 -106162567 + Charlie8 DNA MER1_type 38 234 -2183 616 168 0 0 chrX 56437610 56437705 -106162225 - MER5A DNA MER1_type -83 106 12 230 240 6 34 chrX 56438094 56438273 -106161657 + GA-rich Low_complexity Low_complexity 3 176 0 2089 126 78 28 chrX 56438314 56438671 -106161259 - THE1C LTR MaLR 0 375 1 181 273 125 23 chrX 56438698 56438786 -106161144 + MIR3 SINE MIR 109 205 -3 386 361 42 39 chrX 56439011 56439343 -106160587 + L2 LINE L2 2507 2839 -475 200 276 17 0 chrX 56439599 56439657 -106160273 + L2 LINE L2 3210 3268 -4 667 227 33 0 chrX 56440068 56440218 -106159712 + MIR SINE MIR 87 241 -21 31587 112 12 54 chrX 56440366 56446783 -106153147 + L1PA7 LINE L1 12 6151 -3 3400 250 52 32 chrX 56447232 56448565 -106151365 - L2 LINE L2 0 3313 1955 798 203 8 93 chrX 56448960 56449142 -106150788 - MIR SINE MIR -30 232 73 414 0 0 0 chrX 56449142 56449188 -106150742 + (TAA)n Simple_repeat Simple_repeat 3 48 0 798 203 8 93 chrX 56449188 56449241 -106150689 - MIR SINE MIR -189 73 17 604 211 200 17 chrX 56449258 56449433 -106150497 + MER58C DNA MER1_type 9 215 0 770 184 126 11 chrX 56449701 56449891 -106150039 - L1MB4 LINE L1 -110 6070 5859 43152 48 11 1 chrX 56449895 56455981 -106143949 - L1PA4 LINE L1 -2 6153 1 3307 186 14 12 chrX 56455954 56456372 -106143558 - L1MB4 LINE L1 -275 5905 5489 * 1732 135 69 14 chrX 56456372 56456387 -106143543 - AluSx SINE Alu -7 305 292 189 0 0 0 chrX 56456387 56456408 -106143522 + (TG)n Simple_repeat Simple_repeat 2 22 0 1732 135 69 14 chrX 56456408 56456681 -106143249 - AluSx SINE Alu -20 292 1 3307 186 14 12 chrX 56456681 56457144 -106142786 - L1MB4 LINE L1 -691 5489 5019 216 0 0 0 chrX 56457164 56457188 -106142742 + (A)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chrX 56457371 56457404 -106142526 + AT_rich Low_complexity Low_complexity 1 33 0 303 372 6 17 chrX 56457448 56457620 -106142310 - MIR SINE MIR -65 197 28 3741 170 36 1 chrX 56457784 56458456 -106141474 - L1MA8 LINE L1 -274 6017 5323 4988 102 7 20 chrX 56458456 56459165 -106140765 - L1PA13 LINE L1 -2 6161 5462 2314 136 26 0 chrX 56459165 56459503 -106140427 - L1PB1 LINE L1 -5 6862 6507 940 84 28 17 chrX 56459503 56459681 -106140249 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 0 0 0 chrX 56459691 56459717 -106140213 + AT_rich Low_complexity Low_complexity 1 26 0 713 67 79 0 chrX 56459717 56459881 -106140049 + (TA)n Simple_repeat Simple_repeat 1 177 0 679 73 80 0 chrX 56459895 56460196 -106139734 + (TA)n Simple_repeat Simple_repeat 1 325 0 8525 170 19 21 chrX 56460200 56460595 -106139335 - L1PB1 LINE L1 -360 6507 6113 2702 83 11 28 chrX 56460595 56460956 -106138974 - THE1A LTR MaLR 0 355 1 8525 170 19 21 chrX 56460956 56463577 -106136353 - L1PB1 LINE L1 -754 6113 1439 8929 66 4 132 chrX 56463577 56465040 -106134890 - SVA Other Other 0 1386 111 516 288 85 0 chrX 56465158 56465335 -106134595 + MIR SINE MIR 65 256 -6 1747 150 0 4 chrX 56465847 56466100 -106133830 - AluSx SINE Alu -23 289 38 755 65 0 9 chrX 56466524 56466631 -106133299 + (TTTC)n Simple_repeat Simple_repeat 1 106 0 215 253 0 96 chrX 56466920 56467118 -106132812 + CT-rich Low_complexity Low_complexity 1 179 0 270 312 83 0 chrX 56468086 56468195 -106131735 - MIR SINE MIR -91 171 54 198 167 0 0 chrX 56468233 56468269 -106131661 + (TG)n Simple_repeat Simple_repeat 2 37 0 192 200 0 0 chrX 56468285 56468330 -106131600 + GA-rich Low_complexity Low_complexity 1 45 0 191 418 66 0 chrX 56469221 56469312 -106130618 + L2 LINE L2 3112 3208 -64 287 49 24 0 chrX 56469312 56469353 -106130577 + (TC)n Simple_repeat Simple_repeat 1 42 0 297 226 16 0 chrX 56469387 56469449 -106130481 - L2 LINE L2 -1 3271 3209 459 360 116 0 chrX 56469713 56469946 -106129984 - MIR SINE MIR -1 261 2 219 214 0 107 chrX 56469954 56470038 -106129892 + MIR SINE MIR 137 211 -51 944 221 72 5 chrX 56470169 56470377 -106129553 + MIR SINE MIR 14 235 -27 596 237 20 20 chrX 56470769 56470921 -106129009 + MIR SINE MIR 12 163 -99 183 200 0 0 chrX 56470934 56470964 -106128966 + L2 LINE L2 3227 3256 -16 294 299 117 25 chrX 56471075 56471255 -106128675 + MIR3 SINE MIR 4 141 -67 294 255 169 38 chrX 56471685 56471869 -106128061 - L2 LINE L2 -1 3312 3105 322 261 21 78 chrX 56471900 56472042 -106127888 - L1ME4a LINE L1 -218 5903 5770 812 338 132 0 chrX 56472223 56472578 -106127352 + L3b LINE CR1 1107 1508 -75 1209 230 149 11 chrX 56473315 56473663 -106126267 - MSTD LTR MaLR 0 396 1 3056 141 22 6 chrX 56474666 56475211 -106124719 - L1MA8 LINE L1 -6 6285 5732 443 143 0 0 chrX 56475217 56475287 -106124643 + MLT1C LTR MaLR 366 435 -32 206 263 8 59 chrX 56476052 56476170 -106123760 + GA-rich Low_complexity Low_complexity 3 114 0 202 176 0 0 chrX 56476351 56476385 -106123545 - MIR SINE MIR -120 142 109 232 218 18 18 chrX 56476879 56476934 -106122996 + MIR3 SINE MIR 129 183 -25 839 199 11 31 chrX 56477892 56478083 -106121847 + MIR SINE MIR 71 257 -5 216 0 0 0 chrX 56478086 56478110 -106121820 + (ATG)n Simple_repeat Simple_repeat 1 24 0 454 284 63 0 chrX 56478117 56478244 -106121686 - MIR3 SINE MIR -61 147 13 228 200 40 0 chrX 56478374 56478424 -106121506 + L2 LINE L2 3262 3313 0 287 266 101 18 chrX 56478499 56478608 -106121322 + L3b LINE CR1 1294 1411 -172 760 186 124 133 chrX 56478610 56478948 -106120982 + MER63B DNA MER1_type 2 336 -100 1797 117 21 0 chrX 56478974 56479257 -106120673 - L1MB2 LINE L1 -69 6102 5814 41213 46 3 2 chrX 56479274 56485421 -106114509 - L1PA3 LINE L1 0 6155 2 575 175 135 0 chrX 56485420 56485546 -106114384 - L1MB2 LINE L1 -351 5832 5690 * 538 186 0 35 chrX 56485547 56485660 -106114270 + MER63B DNA MER1_type 326 434 0 380 305 32 0 chrX 56485839 56485934 -106113996 + MER5A DNA MER1_type 9 106 -83 201 94 0 0 chrX 56486021 56486053 -106113877 + (CA)n Simple_repeat Simple_repeat 1 32 0 384 314 5 0 chrX 56486069 56486179 -106113751 - MIR SINE MIR -62 146 31 373 243 111 32 chrX 56486235 56486424 -106113506 + L1MC5 LINE L1 7726 7929 -32 2190 162 64 2 chrX 56487292 56487699 -106112231 - MSTB1 LTR MaLR 0 432 1 1998 151 10 51 chrX 56487835 56488226 -106111704 - THE1C LTR MaLR 0 375 1 1175 205 86 96 chrX 56489015 56489704 -106110226 - L1MC5 LINE L1 -50 7911 7230 280 304 144 23 chrX 56490558 56490821 -106109109 - L3b LINE CR1 -141 1442 1148 461 219 152 20 chrX 56490898 56491049 -106108881 + MIR SINE MIR 44 214 -48 198 372 11 11 chrX 56491085 56491179 -106108751 + L2 LINE L2 2968 3061 -211 719 109 0 0 chrX 56491403 56491504 -106108426 + AluSg/x SINE Alu 204 304 -6 762 269 0 0 chrX 56491510 56491681 -106108249 - MER5B DNA MER1_type -7 171 1 1702 121 7 15 chrX 56491752 56492024 -106107906 - THE1C LTR MaLR 0 375 106 2537 88 5 11 chrX 56492125 56492501 -106107429 - THE1C-int LTR MaLR 0 1580 1207 * 5440 140 74 11 chrX 56492497 56493029 -106106901 - THE1C-int LTR MaLR -561 1019 522 2092 138 0 31 chrX 56493029 56493349 -106106581 - AluSg SINE Alu 0 310 1 5440 140 74 11 chrX 56493349 56493775 -106106155 - THE1C-int LTR MaLR -1058 522 1 2551 108 8 11 chrX 56493775 56494147 -106105783 - THE1C LTR MaLR 0 375 5 378 338 0 8 chrX 56494155 56494288 -106105642 - MIR SINE MIR -108 154 23 1514 213 53 11 chrX 56494670 56495046 -106104884 + L1PBa LINE L1 1 392 -6638 3390 158 29 27 chrX 56495163 56495415 -106104515 + L1 LINE L1 4605 4855 -1291 2015 139 21 0 chrX 56495415 56495746 -106104184 - L1PB1 LINE L1 0 6151 5814 3390 158 29 27 chrX 56495746 56496222 -106103708 + L1 LINE L1 4855 5334 -812 * 4777 167 9 4 chrX 56496221 56497315 -106102615 + L1P4 LINE L1 4397 5491 -670 2578 127 2 2 chrX 56497310 56497712 -106102218 + L1PBa LINE L1 1301 1702 -5405 * 737 208 0 0 chrX 56497860 56498009 -106101921 + L1MC1 LINE L1 4060 4208 -1938 596 219 28 17 chrX 56498023 56498201 -106101729 + L1MC1 LINE L1 4145 4324 -1822 7524 34 2 0 chrX 56498236 56499413 -106100517 - L1PA3 LINE L1 -3 6152 4971 3747 34 0 0 chrX 56499413 56499882 -106100048 + L1P LINE L1 4199 4667 -1479 5188 202 34 15 chrX 56499923 56500335 -106099595 + L1MC1 LINE L1 4362 4764 -1569 195 42 0 0 chrX 56500335 56500359 -106099571 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5188 202 34 15 chrX 56500359 56500657 -106099273 + L1MC1 LINE L1 4764 5055 -1278 2347 64 7 14 chrX 56500657 56500954 -106098976 - AluY SINE Alu -16 295 1 5188 202 34 15 chrX 56500954 56501232 -106098698 + L1MC1 LINE L1 5055 5326 -1007 2063 160 0 24 chrX 56501232 56501606 -106098324 + MER47A DNA MER2_type 2 366 0 5188 202 34 15 chrX 56501606 56502548 -106097382 + L1MC1 LINE L1 5326 6332 -1 7863 201 17 66 chrX 56502558 56504364 -106095566 + L1 LINE L1 2 1718 -5131 1412 191 54 3 chrX 56504356 56504707 -106095223 + L1 LINE L1 4467 4835 -2013 * 10662 36 0 1 chrX 56504702 56506050 -106093880 - L1PA3 LINE L1 -1076 5070 3724 7525 31 2 1 chrX 56506052 56507129 -106092801 + L1PA3 LINE L1 5078 6155 0 4614 199 21 14 chrX 56507133 56507563 -106092367 + L1 LINE L1 4816 5242 -1606 2256 128 0 3 chrX 56507563 56507869 -106092061 + AluSc SINE Alu 1 305 -4 4614 199 21 14 chrX 56507869 56508596 -106091334 + L1 LINE L1 5242 5981 -867 2397 275 36 19 chrX 56508609 56509388 -106090542 + L1PA15 LINE L1 1 792 -5995 2646 227 31 23 chrX 56509647 56512984 -106086946 + L1PA15 LINE L1 1235 4714 -2102 1378 200 10 43 chrX 56512984 56513289 -106086641 + AluJb SINE Alu 1 295 -17 2646 227 31 23 chrX 56513289 56515408 -106084522 + L1PA15 LINE L1 4714 6816 0 3316 111 25 15 chrX 56515408 56515996 -106083934 + L1MA4A LINE L1 5274 5867 -436 601 195 0 16 chrX 56515997 56516125 -106083805 + L1PA15-16 LINE L1 28 153 -6696 * 985 281 103 3 chrX 56516119 56516479 -106083451 + L1MA4 LINE L1 381 776 -6433 14061 199 32 11 chrX 56516593 56519524 -106080406 + L1MA4 LINE L1 1541 4656 -2706 2110 144 0 0 chrX 56519524 56519822 -106080108 + AluSx SINE Alu 1 298 -14 14061 199 32 11 chrX 56519822 56522332 -106077598 + L1MA4 LINE L1 4656 7112 -250 2031 149 0 0 chrX 56522332 56522633 -106077297 + AluSg SINE Alu 1 301 -9 554 117 0 0 chrX 56522644 56522721 -106077209 + L1P3 LINE L1 5 81 -6380 221 56 0 28 chrX 56522721 56522757 -106077173 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5015 43 0 0 chrX 56522757 56523344 -106076586 - L1PA4 LINE L1 -24 6131 5545 11086 129 17 12 chrX 56523344 56525427 -106074503 + L1P3 LINE L1 65 2157 -4304 * 28747 50 1 4 chrX 56525426 56528974 -106070956 - L1P LINE L1 -2600 3546 9 17794 107 83 13 chrX 56528977 56531816 -106068114 + L1P3 LINE L1 2145 5180 -1281 1431 82 68 5 chrX 56531916 56532123 -106067807 - L1P LINE L1 -5926 220 1 * 3307 186 14 12 chrX 56532096 56532514 -106067416 - L1MB4 LINE L1 -275 5905 5489 1732 135 69 14 chrX 56532514 56532529 -106067401 - AluSx SINE Alu -7 305 292 189 0 0 0 chrX 56532529 56532550 -106067380 + (TG)n Simple_repeat Simple_repeat 2 22 0 1732 135 69 14 chrX 56532550 56532823 -106067107 - AluSx SINE Alu -20 292 1 3307 186 14 12 chrX 56532823 56533286 -106066644 - L1MB4 LINE L1 -691 5489 5019 288 102 0 0 chrX 56533306 56533355 -106066575 + (A)n Simple_repeat Simple_repeat 1 49 0 640 270 39 39 chrX 56533538 56533797 -106066133 - MIR SINE MIR -3 259 1 247 327 26 35 chrX 56534423 56534536 -106065394 + L2 LINE L2 3116 3227 -45 783 297 70 4 chrX 56534668 56534897 -106065033 + MIR SINE MIR 19 262 0 338 276 150 16 chrX 56535267 56535394 -106064536 + MIR3 SINE MIR 48 191 -17 4466 224 49 41 chrX 56537177 56538752 -106061178 + L1MDb LINE L1 16 1590 -4816 947 247 39 100 chrX 56538755 56539325 -106060605 + L1 LINE L1 3468 4002 -2144 24475 46 3 77 chrX 56539426 56542943 -106056987 - L1P LINE L1 -1602 4544 1289 256 150 188 38 chrX 56542932 56543012 -106056918 - L1 LINE L1 -1697 4449 4358 * 184 196 36 54 chrX 56543049 56543105 -106056825 + MIR3 SINE MIR 123 177 -31 1035 227 50 5 chrX 56543501 56543721 -106056209 + MIR SINE MIR 3 232 -30 273 303 20 16 chrX 56543792 56543921 -106056009 + MIR SINE MIR 2 129 -79 279 319 44 37 chrX 56544430 56544565 -106055365 + L2 LINE L2 3111 3246 -26 240 344 135 6 chrX 56544603 56544766 -106055164 + MIR3 SINE MIR 2 185 -23 257 278 14 14 chrX 56545052 56545124 -106054806 + CT-rich Low_complexity Low_complexity 5 76 0 368 277 53 73 chrX 56547150 56547356 -106052574 + MIR3 SINE MIR 4 205 -3 459 286 78 41 chrX 56547399 56547620 -106052310 - MIR SINE MIR -8 254 32 1964 109 70 0 chrX 56547835 56548120 -106051810 - AluY SINE Alu -6 305 1 368 266 21 0 chrX 56548612 56548706 -106051224 + MIR SINE MIR 128 223 -39 183 310 0 17 chrX 56548831 56548889 -106051041 + MIR3 SINE MIR 4 60 -148 222 62 0 0 chrX 56548889 56548921 -106051009 + (T)n Simple_repeat Simple_repeat 1 32 0 228 296 174 0 chrX 56548921 56549036 -106050894 + MIR3 SINE MIR 67 201 -7 211 261 72 14 chrX 56549292 56549361 -106050569 - MIR3 SINE MIR -54 154 82 440 274 0 8 chrX 56549914 56550031 -106049899 - MIR SINE MIR 0 262 147 262 279 12 0 chrX 56550043 56550129 -106049801 + MIR SINE MIR 173 259 -3 215 214 0 0 chrX 56550337 56550379 -106049551 - MIR SINE MIR -105 157 116 263 341 48 24 chrX 56550394 56550520 -106049410 + MIR SINE MIR 20 148 -114 2248 137 62 11 chrX 56550699 56551056 -106048874 - THE1C LTR MaLR 0 375 1 10278 121 8 54 chrX 56551056 56552712 -106047218 - THE1C-int LTR MaLR 0 1580 1 2467 119 13 46 chrX 56552712 56553100 -106046830 - THE1C LTR MaLR 0 375 1 185 300 191 36 chrX 56553141 56553251 -106046679 - MIR SINE MIR -113 149 23 306 241 102 102 chrX 56553591 56553856 -106046074 - LTR38 LTR ERV1 0 556 292 249 239 15 30 chrX 56553987 56554054 -106045876 - LTR38 LTR ERV1 -362 194 129 389 189 123 28 chrX 56554147 56554253 -106045677 - LTR38B LTR ERV1 -494 116 1 333 198 21 73 chrX 56554565 56554661 -106045269 + MLT1C LTR MaLR 8 98 -369 1590 141 44 28 chrX 56554662 56555002 -106044928 - MER4A LTR ERV1 0 664 261 602 152 0 10 chrX 56555002 56555101 -106044829 - MER4A LTR ERV1 -566 98 1 7116 109 39 47 chrX 56555114 56556083 -106043847 - MER4A-int LTR ERV1 -3 6595 5637 1887 154 10 3 chrX 56556083 56556382 -106043548 - AluSq SINE Alu -12 301 1 7116 109 39 47 chrX 56556382 56556636 -106043294 - MER4A-int LTR ERV1 -961 5637 5382 257 271 47 47 chrX 56556687 56556794 -106043136 + MIR3 SINE MIR 99 205 -3 452 302 47 27 chrX 56558745 56558894 -106041036 - MIR3 SINE MIR -19 189 38 302 315 144 9 chrX 56559852 56559963 -106039967 + MIR SINE MIR 20 145 -117 185 189 27 0 chrX 56560005 56560042 -106039888 + L2 LINE L2 3214 3251 -21 575 268 32 22 chrX 56560248 56560441 -106039489 + MIR SINE MIR 20 212 -50 22 80 0 0 chrX 56561422 56561472 -106038458 + AT_rich Low_complexity Low_complexity 1 50 0 1796 133 65 22 chrX 56561955 56562087 -106037843 - MLT1C LTR MaLR -129 338 213 321 100 0 0 chrX 56562087 56562137 -106037793 + (TG)n Simple_repeat Simple_repeat 2 51 0 1796 133 65 22 chrX 56562137 56562328 -106037602 - MLT1C LTR MaLR -254 213 1 438 309 75 67 chrX 56562336 56562870 -106037060 + L2 LINE L2 2224 2761 -553 214 277 0 0 chrX 56563145 56563192 -106036738 + L2 LINE L2 3261 3307 -6 251 246 69 13 chrX 56563746 56563851 -106036079 - MIR SINE MIR -72 136 48 557 274 8 0 chrX 56564183 56564307 -106035623 + MIR SINE MIR 19 143 -119 492 269 43 7 chrX 56564308 56564449 -106035481 - L2 LINE L2 0 3313 3168 208 341 24 0 chrX 56564453 56564535 -106035395 + MIR SINE MIR 158 241 -21 779 282 13 18 chrX 56565235 56565462 -106034468 + MIR SINE MIR 8 233 -29 181 248 54 46 chrX 56565481 56565584 -106034346 + MIR SINE MIR 88 190 -72 324 48 0 0 chrX 56565839 56565881 -106034049 + (CA)n Simple_repeat Simple_repeat 2 43 0 831 269 47 28 chrX 56566373 56566626 -106033304 - MIR SINE MIR 0 262 5 631 259 27 32 chrX 56566931 56567116 -106032814 - MIR SINE MIR -14 248 65 1849 175 147 0 chrX 56567116 56567470 -106032460 - MSTB LTR MaLR 0 426 21 221 136 0 91 chrX 56567472 56567516 -106032414 - MIR SINE MIR -201 61 22 492 242 36 36 chrX 56567587 56567752 -106032178 - MIR SINE MIR -3 259 95 359 195 0 65 chrX 56567792 56567869 -106032061 + L1MC3 LINE L1 7070 7141 -644 5350 15 2 5 chrX 56567877 56568494 -106031436 - L1PA4 LINE L1 -3 6152 5538 211 273 0 0 chrX 56568521 56568565 -106031365 - MIR SINE MIR -169 93 50 191 256 154 13 chrX 56568602 56568680 -106031250 + L2 LINE L2 2624 2712 -602 1202 255 123 25 chrX 56568741 56569262 -106030668 - L2 LINE L2 -420 2894 2323 205 224 163 0 chrX 56569634 56569683 -106030247 - MIR SINE MIR 0 262 206 548 331 12 6 chrX 56569720 56569889 -106030041 - MIR SINE MIR -46 216 47 654 216 11 83 chrX 56569931 56570112 -106029818 + MER5B DNA MER1_type 11 178 0 337 313 0 0 chrX 56570642 56570722 -106029208 + MIR SINE MIR 66 145 -63 599 189 0 143 chrX 56570808 56570830 -106029100 - MIR SINE MIR -12 250 226 1893 173 38 78 chrX 56570830 56571356 -106028574 - MLT1D LTR MaLR 0 505 1 599 189 0 143 chrX 56571356 56571508 -106028422 - MIR SINE MIR -36 226 101 282 230 0 27 chrX 56571706 56571780 -106028150 - MLT1J LTR MaLR -193 318 247 2366 114 0 0 chrX 56572066 56572374 -106027556 + AluSx SINE Alu 1 308 -4 549 226 152 25 chrX 56572378 56572582 -106027348 - Charlie8 DNA MER1_type -2152 265 36 249 234 149 11 chrX 56572639 56572733 -106027197 + MIR SINE MIR 40 146 -62 278 50 25 0 chrX 56573948 56573988 -106025942 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 217 0 61 0 chrX 56574357 56574390 -106025540 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2192 122 3 34 chrX 56574671 56574991 -106024939 + AluSx SINE Alu 1 310 -2 409 350 49 6 chrX 56575262 56575425 -106024505 - MIR SINE MIR -39 223 54 250 333 117 0 chrX 56575587 56575707 -106024223 - L2 LINE L2 -227 3045 2912 2253 141 8 24 chrX 56575793 56576163 -106023767 - THE1B LTR MaLR 0 364 1 9914 107 12 6 chrX 56576163 56577636 -106022294 - THE1B-int LTR MaLR 0 1580 99 1024 117 0 0 chrX 56577637 56577791 -106022139 - THE1B-int LTR MaLR -1426 154 1 1998 137 17 17 chrX 56577791 56578141 -106021789 - THE1B LTR MaLR 0 364 15 278 279 72 16 chrX 56578149 56578289 -106021641 - MIR SINE MIR -64 144 32 250 323 30 38 chrX 56578916 56579049 -106020881 - MIR SINE MIR -43 219 88 298 181 83 0 chrX 56579169 56579241 -106020689 - L1ME1 LINE L1 -5 6161 6084 408 271 53 0 chrX 56579386 56579519 -106020411 - L1ME1 LINE L1 -89 6077 5938 205 211 0 0 chrX 56579642 56579680 -106020250 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 187 306 0 16 chrX 56580625 56580687 -106019243 + MIR3 SINE MIR 10 70 -138 195 293 17 0 chrX 56580791 56580849 -106019081 + MIR3 SINE MIR 123 181 -27 1521 119 0 4 chrX 56581025 56581261 -106018669 + MER96B DNA MER1_type? 1 235 -182 822 272 5 20 chrX 56581392 56581594 -106018336 + MIR SINE MIR 8 206 -56 1075 172 36 8 chrX 56581939 56582189 -106017741 - L1MA4 LINE L1 -9 6291 6035 * 6801 74 12 0 chrX 56582181 56583861 -106016069 - L1PA7 LINE L1 -6 6148 4455 18736 28 0 0 chrX 56583965 56586969 -106012961 + L1PA3 LINE L1 3150 6152 -3 23 0 0 0 chrX 56586969 56586992 -106012938 + AT_rich Low_complexity Low_complexity 1 23 0 4469 159 27 20 chrX 56586992 56588572 -106011358 + L1MA8 LINE L1 4441 6037 -254 332 205 0 48 chrX 56588572 56588655 -106011275 - AluJ/FRAM SINE Alu 0 302 224 955 179 6 6 chrX 56588660 56588833 -106011097 + MER58B DNA MER1_type 169 341 0 439 276 99 70 chrX 56589354 56589597 -106010333 - MIR SINE MIR 0 262 13 789 240 22 6 chrX 56589687 56589870 -106010060 - MIR SINE MIR -7 255 70 366 277 126 0 chrX 56590398 56590517 -106009413 - MIR3 SINE MIR -9 199 66 369 314 44 22 chrX 56591913 56592050 -106007880 - MIR3 SINE MIR -63 145 6 1413 249 40 15 chrX 56592127 56592670 -106007260 - L1M4 LINE L1 -2682 3464 2908 620 248 119 47 chrX 56592671 56592949 -106006981 - L2 LINE L2 -42 3271 2974 400 221 15 23 chrX 56593003 56593134 -106006796 - LTR55 LTR ERV -7 541 412 2268 173 25 2 chrX 56593144 56593694 -106006236 + L1MA9 LINE L1 5632 6290 -22 4054 224 35 44 chrX 56593739 56594140 -106005790 - L1ME2 LINE L1 -49 6926 6523 282 111 0 0 chrX 56594140 56594185 -106005745 - U5 snRNA snRNA -71 45 1 4054 224 35 44 chrX 56594185 56595572 -106004358 - L1ME2 LINE L1 -452 6523 5118 489 143 0 0 chrX 56595573 56595657 -106004273 + MLT2B3 LTR ERVL 1 84 -470 3510 212 105 10 chrX 56595757 56596683 -106003247 + L1PB1 LINE L1 136 1149 -5714 * 9221 191 5 18 chrX 56596680 56599150 -106000780 + L1PB1 LINE L1 3856 6291 -576 339 25 0 0 chrX 56599259 56599299 -106000631 + (TA)n Simple_repeat Simple_repeat 2 41 0 2147 138 11 3 chrX 56599300 56599654 -106000276 + L1PB1 LINE L1 6510 6866 -1 287 229 19 0 chrX 56599691 56599796 -106000134 - L1ME2 LINE L1 -3182 3775 3669 2032 306 62 22 chrX 56599831 56600750 -105999180 - L1ME2 LINE L1 -5799 1060 105 436 242 39 31 chrX 56601007 56601125 -105998805 - L2 LINE L2 0 3313 3192 466 150 0 0 chrX 56601125 56601205 -105998725 + MER116 DNA Mariner 1 80 0 455 342 70 16 chrX 56601220 56601407 -105998523 + MIR SINE MIR 60 256 -6 643 128 46 0 chrX 56601795 56601904 -105998026 + MSTC LTR MaLR 1 114 -314 616 105 181 0 chrX 56601902 56602007 -105997923 + MSTC LTR MaLR 305 428 0 * 2029 65 34 0 chrX 56602203 56602466 -105997464 + AluY SINE Alu 39 310 -1 180 77 0 0 chrX 56602485 56602511 -105997419 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 906 197 6 17 chrX 56602565 56602743 -105997187 - FRAM SINE Alu 0 176 1 200 191 24 0 chrX 56602745 56602787 -105997143 + L3b LINE CR1 1373 1415 -168 585 269 99 30 chrX 56602801 56603002 -105996928 + MER58C DNA MER1_type 1 215 0 410 350 74 19 chrX 56603618 56603875 -105996055 - L3 LINE CR1 -33 1544 1274 251 372 137 4 chrX 56604342 56604568 -105995362 - L3 LINE CR1 -10 1567 1312 2103 88 0 0 chrX 56604705 56605002 -105994928 + AluY SINE Alu 40 336 0 454 332 88 18 chrX 56605002 56605228 -105994702 + L3b LINE CR1 1338 1579 -4 270 273 34 23 chrX 56605804 56605892 -105994038 - MIR SINE MIR -74 188 100 * 360 269 32 70 chrX 56605877 56606033 -105993897 + L3 LINE CR1 1392 1541 -36 747 224 145 0 chrX 56606253 56606481 -105993449 - MIR SINE MIR 0 262 2 503 310 105 13 chrX 56607136 56607375 -105992555 - MIR SINE MIR 0 262 2 200 309 128 11 chrX 56607516 56607610 -105992320 - MIR SINE MIR -55 153 49 197 237 0 0 chrX 56608319 56608357 -105991573 - MIR3 SINE MIR -31 177 140 317 259 193 104 chrX 56608444 56608791 -105991139 - L3 LINE CR1 -116 1461 1084 331 248 0 64 chrX 56609022 56609131 -105990799 + MER5A DNA MER1_type 82 183 -6 373 213 0 0 chrX 56610527 56610607 -105989323 + L1ME3A LINE L1 5764 5843 -327 526 255 174 0 chrX 56610613 56610762 -105989168 - MER5A DNA MER1_type -6 183 9 212 278 0 0 chrX 56611363 56611417 -105988513 + MIR SINE MIR 51 104 -158 * 767 304 121 36 chrX 56611410 56611825 -105988105 - L2 LINE L2 -27 3286 2837 185 197 212 15 chrX 56611833 56611899 -105988031 + MIR SINE MIR 94 172 -90 1681 190 150 12 chrX 56611993 56612593 -105987337 + L1MCa LINE L1 1945 2682 -3925 1108 92 12 0 chrX 56612590 56612763 -105987167 - L1P LINE L1 -1416 4730 4556 * 3761 173 32 5 chrX 56612868 56613649 -105986281 + L1PB4 LINE L1 5353 6154 -2 3144 243 25 53 chrX 56613655 56614456 -105985474 + L1MCa LINE L1 3045 3794 -2632 461 238 109 0 chrX 56614456 56614557 -105985373 - FLAM_A SINE Alu -18 115 4 3144 243 25 53 chrX 56614557 56615109 -105984821 + L1MCa LINE L1 3794 4360 -2066 244 222 14 28 chrX 56615098 56615170 -105984760 + L1MA1 LINE L1 8 78 -7487 * 5887 207 71 2 chrX 56615170 56616410 -105983520 + L1MA1 LINE L1 445 1769 -5796 2003 161 127 16 chrX 56616410 56616795 -105983135 - MSTA LTR MaLR 0 428 1 5760 150 5 23 chrX 56616795 56617423 -105982507 - MSTA-int LTR MaLR 0 1580 973 2216 137 39 39 chrX 56617423 56617787 -105982143 + THE1B LTR MaLR 1 364 0 5760 150 5 23 chrX 56617787 56618123 -105981807 - MSTA-int LTR MaLR -607 973 633 442 223 36 27 chrX 56618136 56618248 -105981682 + MST-int LTR MaLR 373 485 -1166 10683 173 23 11 chrX 56618264 56619937 -105979993 + L1MA1 LINE L1 1776 3427 -4138 2540 68 0 7 chrX 56619937 56620245 -105979685 + AluY SINE Alu 5 310 -1 10683 173 23 11 chrX 56620245 56620786 -105979144 + L1MA1 LINE L1 3427 3960 -3605 2255 113 0 7 chrX 56620786 56621088 -105978842 + AluSx SINE Alu 1 300 -12 10683 173 23 11 chrX 56621088 56621934 -105977996 + L1MA1 LINE L1 3960 4794 -2771 2489 166 39 10 chrX 56621934 56622349 -105977581 - MSTA LTR MaLR -1 427 1 10683 173 23 11 chrX 56622349 56623396 -105976534 + L1MA1 LINE L1 4794 5939 -1626 6932 227 35 15 chrX 56623395 56624891 -105975039 + L1PA13 LINE L1 158 1684 -5103 * 3332 92 2 0 chrX 56624889 56625347 -105974583 - L1P LINE L1 -3159 2987 2529 * 16103 119 7 23 chrX 56625343 56627696 -105972234 + L1MB7 LINE L1 2978 5285 -899 5161 203 4 39 chrX 56627696 56627752 -105972178 + L1MA1 LINE L1 6832 6888 -833 1939 143 0 26 chrX 56627752 56628060 -105971870 - AluSx SINE Alu -12 300 1 5161 203 4 39 chrX 56628060 56628924 -105971006 + L1MA1 LINE L1 6888 7721 0 16103 119 7 23 chrX 56628924 56629806 -105970124 + L1MB7 LINE L1 5285 6179 -5 308 239 28 9 chrX 56629809 56629918 -105970012 + L1MC5 LINE L1 7664 7774 -187 1872 191 67 13 chrX 56630585 56630961 -105968969 + MSTD LTR MaLR 1 396 0 1938 138 7 10 chrX 56631943 56632233 -105967697 + AluSx SINE Alu 1 289 -23 1859 110 28 24 chrX 56632660 56632951 -105966979 - THE1C LTR MaLR 0 375 84 583 100 12 0 chrX 56633240 56633320 -105966610 - THE1C LTR MaLR -294 81 1 373 327 40 0 chrX 56633369 56633470 -105966460 + MER91C DNA MER1_type 35 139 -1 220 204 0 19 chrX 56633571 56633625 -105966305 + (TTATG)n Simple_repeat Simple_repeat 1 53 0 1033 275 80 64 chrX 56633871 56634299 -105965631 + THE1B LTR MaLR 1 428 0 12046 110 9 0 chrX 56634299 56635865 -105964065 + THE1B-int LTR MaLR 1 1580 0 2334 138 33 25 chrX 56635865 56636226 -105963704 + THE1B LTR MaLR 1 364 0 1946 146 10 3 chrX 56636498 56636799 -105963131 - AluSx SINE Alu -9 303 1 270 0 0 0 chrX 56636826 56636856 -105963074 + (CA)n Simple_repeat Simple_repeat 1 30 0 18020 39 2 2 chrX 56637213 56639627 -105960303 - L1P1 LINE L1 -516 5639 3225 8009 27 9 0 chrX 56639627 56641025 -105958905 + L1PA3 LINE L1 4747 6152 -3 1241 267 45 15 chrX 56641046 56641443 -105958487 + L1M4 LINE L1 2351 2759 -3387 639 260 5 1 chrX 56641437 56641623 -105958307 + L1MA3 LINE L1 4235 4420 -1726 * 191 194 37 0 chrX 56641624 56641732 -105958198 + (TA)n Simple_repeat Simple_repeat 2 113 0 3405 194 88 24 chrX 56641733 56642636 -105957294 + L1MA3 LINE L1 4409 5368 -778 1403 134 9 5 chrX 56642614 56642838 -105957092 + L1MA3 LINE L1 5713 5937 -368 * 296 230 0 40 chrX 56643003 56643077 -105956853 + Tigger5 DNA MER2_type 1 71 -2252 21 57 0 0 chrX 56643078 56643113 -105956817 + AT_rich Low_complexity Low_complexity 1 35 0 357 197 0 0 chrX 56643118 56643179 -105956751 + Tigger5 DNA MER2_type 2263 2323 0 351 276 0 0 chrX 56643262 56643338 -105956592 + MIR3 SINE MIR 81 156 -52 3450 87 19 14 chrX 56643816 56644301 -105955629 + LTR15 LTR ERV1 1 487 -6 356 305 85 23 chrX 56644326 56644514 -105955416 + MIR3 SINE MIR 5 198 -64 201 74 0 0 chrX 56644888 56644915 -105955015 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1651 161 36 13 chrX 56644917 56645222 -105954708 - AluJb SINE Alu 0 312 1 211 250 0 0 chrX 56645222 56645258 -105954672 - MIR SINE MIR -56 152 117 3547 133 68 0 chrX 56645778 56646295 -105953635 + MER41C LTR ERV1 1 552 -2 958 242 60 75 chrX 56646682 56646831 -105953099 - L2 LINE L2 -129 3184 3034 3002 117 70 32 chrX 56646831 56647302 -105952628 - LTR22B LTR ERVK -3 489 1 958 242 60 75 chrX 56647302 56647645 -105952285 - L2 LINE L2 -279 3034 2705 250 333 11 11 chrX 56647623 56647710 -105952220 - MIR SINE MIR -148 114 28 * 2217 102 3 13 chrX 56648500 56648803 -105951127 + AluY SINE Alu 1 300 -11 24 0 0 0 chrX 56648887 56648911 -105951019 + AT_rich Low_complexity Low_complexity 1 24 0 1814 129 4 4 chrX 56648923 56649194 -105950736 + L1PA16 LINE L1 5896 6166 0 2350 156 8 19 chrX 56649470 56649849 -105950081 - THE1C LTR MaLR 0 375 1 10518 121 13 30 chrX 56649849 56651440 -105948490 - THE1C-int LTR MaLR 0 1580 17 2504 127 11 19 chrX 56651467 56651845 -105948085 - THE1C LTR MaLR 0 375 1 717 240 18 72 chrX 56652569 56652753 -105947177 - MER63A DNA MER1_type -1478 210 38 2088 129 0 7 chrX 56652753 56653047 -105946883 - AluSg1 SINE Alu -17 292 1 717 240 18 72 chrX 56653047 56653083 -105946847 - MER63A DNA MER1_type -1650 38 2 313 288 45 30 chrX 56653158 56653290 -105946640 + L2 LINE L2 3177 3310 -3 5319 143 11 16 chrX 56654420 56655309 -105944621 - Tigger3b DNA MER2_type -1 1230 346 209 316 26 0 chrX 56655397 56655473 -105944457 - L2 LINE L2 -50 3263 3186 534 269 177 11 chrX 56656109 56656295 -105943635 + Charlie8 DNA MER1_type 59 275 -2142 6736 123 34 22 chrX 56656468 56657592 -105942338 + L1PA10 LINE L1 4093 5229 -917 234 91 0 0 chrX 56657592 56657625 -105942305 + (T)n Simple_repeat Simple_repeat 1 33 0 43518 34 21 1 chrX 56657629 56663659 -105936271 - L1HS LINE L1 -1 6154 1 6382 98 41 1 chrX 56663660 56664574 -105935356 + L1PA10 LINE L1 5218 6166 -2 415 367 18 18 chrX 56665411 56665580 -105934350 - MIR3 SINE MIR -6 202 34 611 179 60 0 chrX 56665791 56665908 -105934022 + MLT2B1 LTR ERVL 1 124 -396 1413 184 45 4 chrX 56665908 56666175 -105933755 + MLT1A1 LTR MaLR 88 365 0 365 69 0 17 chrX 56666341 56666399 -105933531 + (CA)n Simple_repeat Simple_repeat 2 58 0 487 246 63 14 chrX 56667187 56667329 -105932601 - MIR SINE MIR -6 256 108 285 308 116 27 chrX 56667339 56667485 -105932445 + MLT1K LTR MaLR 17 175 -413 761 204 53 98 chrX 56667685 56667970 -105931960 + MLT1K LTR MaLR 315 586 -2 776 322 50 13 chrX 56668126 56668427 -105931503 - L3 LINE CR1 -427 1150 839 1225 214 34 0 chrX 56668434 56668729 -105931201 - L1MB7 LINE L1 -64 6120 5816 4165 171 61 19 chrX 56668733 56669845 -105930085 - L1MB4 LINE L1 -1 6415 5249 2074 206 26 24 chrX 56669862 56670435 -105929495 + L1 LINE L1 2672 3245 -2901 8786 224 72 76 chrX 56670438 56671576 -105928354 - L1MB4 LINE L1 -1146 5236 4095 2275 95 3 22 chrX 56671576 56671892 -105928038 - AluSg SINE Alu 0 310 1 8786 224 72 76 chrX 56671892 56672334 -105927596 - L1MB4 LINE L1 -2287 4095 3653 985 195 63 24 chrX 56672334 56672539 -105927391 + AluJo SINE Alu 78 290 -22 8786 224 72 76 chrX 56672539 56675981 -105923949 - L1MB4 LINE L1 -2729 3653 26 2489 212 20 6 chrX 56675989 56676978 -105922952 - L1MB7 LINE L1 -354 5830 4826 4624 233 40 98 chrX 56677061 56679894 -105920036 + L1M2a LINE L1 411 3043 -4523 * 4931 113 4 13 chrX 56679891 56680653 -105919277 + L1PA15 LINE L1 5398 6152 -13 1744 258 63 11 chrX 56680660 56680674 -105919256 + L1MA9 LINE L1 2729 2741 -4824 1696 203 7 19 chrX 56680674 56680984 -105918946 + AluJb SINE Alu 1 306 -6 1744 258 63 11 chrX 56680984 56681841 -105918089 + L1MA9 LINE L1 2741 3626 -3939 17753 187 42 8 chrX 56681856 56686761 -105913169 + L1MA3 LINE L1 19 4756 -2809 1912 146 0 0 chrX 56686761 56687036 -105912894 + AluSq SINE Alu 3 277 -36 303 28 0 0 chrX 56687041 56687077 -105912853 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 17753 187 42 8 chrX 56687077 56687615 -105912315 + L1MA3 LINE L1 4759 5657 -1908 253 200 0 0 chrX 56687620 56687680 -105912250 + L1MA3 LINE L1 6691 6750 -973 1929 112 29 4 chrX 56687681 56687957 -105911973 + AluSg SINE Alu 1 283 -27 252 0 0 0 chrX 56687960 56687988 -105911942 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2315 99 0 0 chrX 56688200 56688504 -105911426 - AluSc SINE Alu -5 304 1 224 295 0 32 chrX 56688775 56688870 -105911060 + (CGG)n Simple_repeat Simple_repeat 2 93 0 5405 138 15 7 chrX 56690196 56691157 -105908773 + L1MA3 LINE L1 6757 7724 0 483 287 6 0 chrX 56691151 56691325 -105908605 + L1MA9 LINE L1 3620 3794 -3771 * 28 29 0 0 chrX 56691398 56691433 -105908497 + AT_rich Low_complexity Low_complexity 1 35 0 733 247 16 5 chrX 56691441 56691635 -105908295 + L1PA12 LINE L1 7 202 -7379 * 785 151 0 0 chrX 56691610 56691756 -105908174 + L1M1 LINE L1 6120 6265 -1319 * 4740 259 36 36 chrX 56691748 56693124 -105906806 + L1PA12 LINE L1 181 2376 -5208 225 0 0 0 chrX 56693124 56693149 -105906781 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4740 259 36 36 chrX 56693149 56693433 -105906497 + L1PA12 LINE L1 2376 2659 -4925 5613 119 25 3 chrX 56693436 56694923 -105905007 + L1PA11 LINE L1 4657 6174 0 7524 204 51 15 chrX 56694954 56697899 -105902031 + L1MA9 LINE L1 4639 7693 -38 189 213 0 0 chrX 56697940 56697987 -105901943 + (CAG)n Simple_repeat Simple_repeat 2 48 0 486 330 50 57 chrX 56698015 56698333 -105901597 - L3 LINE CR1 -1073 504 189 459 283 9 9 chrX 56698658 56698771 -105901159 + MIR3 SINE MIR 75 187 -21 1854 167 0 3 chrX 56698851 56699139 -105900791 + AluSx SINE Alu 1 287 -25 503 259 105 6 chrX 56699904 56700066 -105899864 - MIR SINE MIR -75 187 10 3829 182 47 6 chrX 56700389 56701392 -105898538 - L1MC2 LINE L1 -277 6485 5446 1155 239 55 12 chrX 56701394 56701812 -105898118 - L1MC2 LINE L1 -1370 5194 4759 37892 54 5 1 chrX 56702007 56707921 -105892009 - L1PA4 LINE L1 -1 6154 4 1900 242 22 35 chrX 56707921 56708546 -105891384 - L1MC2 LINE L1 -1763 4801 4185 3814 199 17 15 chrX 56708554 56709367 -105890563 + L1PA12 LINE L1 880 2490 -5094 1258 189 19 55 chrX 56709499 56709806 -105890124 + L1PA12 LINE L1 2445 2740 -4834 * 11442 157 19 19 chrX 56709805 56710422 -105889508 - L1PA13 LINE L1 -142 6021 5406 3520 107 0 21 chrX 56710422 56710944 -105888986 - MER9 LTR ERVK 0 511 1 11442 157 19 19 chrX 56710944 56713201 -105886729 - L1PA13 LINE L1 -757 5406 3143 231 36 0 0 chrX 56713201 56713229 -105886701 + (TG)n Simple_repeat Simple_repeat 1 28 0 11442 157 19 19 chrX 56713229 56713535 -105886395 - L1PA13 LINE L1 -3020 3143 2839 829 219 5 11 chrX 56713535 56713908 -105886022 - L1MC2 LINE L1 -3813 2751 2383 262 108 0 0 chrX 56713974 56714011 -105885919 + L1M1 LINE L1 1085 1121 -6444 1163 237 4 20 chrX 56714091 56714336 -105885594 - AluJo SINE Alu -43 269 29 669 173 81 5 chrX 56714365 56714550 -105885380 - L1MC2 LINE L1 -4185 2379 2181 16024 173 40 23 chrX 56714604 56717884 -105882046 + L1MA2 LINE L1 11 3346 -4219 10941 160 19 8 chrX 56717928 56720220 -105879710 + L1MA2 LINE L1 4412 6758 -965 1567 224 7 0 chrX 56720220 56720515 -105879415 + AluJb SINE Alu 1 297 -15 10941 160 19 8 chrX 56720515 56721492 -105878438 + L1MA2 LINE L1 6758 7723 0 2824 222 38 55 chrX 56721503 56721999 -105877931 - L1MC2 LINE L1 -4476 2088 1585 706 108 27 0 chrX 56721999 56722108 -105877822 + L1MA5 LINE L1 6181 6294 -6 2824 222 38 55 chrX 56722108 56723527 -105876403 - L1MC2 LINE L1 -4979 1585 301 39011 77 3 0 chrX 56723532 56729656 -105870274 - L1PA4 LINE L1 -4 6151 13 976 223 25 8 chrX 56729658 56729900 -105870030 - L1MC2 LINE L1 -6180 384 139 485 271 23 16 chrX 56729912 56730041 -105869889 - L2 LINE L2 -19 3294 3165 28124 115 25 55 chrX 56730058 56736414 -105863516 + L1PA7 LINE L1 1 6149 -5 274 228 57 0 chrX 56736439 56736562 -105863368 + MER113 DNA MER1_type? 85 214 -307 363 262 168 0 chrX 56736792 56736899 -105863031 - MER91C DNA MER1_type -1 139 15 675 286 83 23 chrX 56737226 56737835 -105862095 + L1MC5 LINE L1 7222 7776 -185 297 290 28 47 chrX 56737860 56737967 -105861963 + L3 LINE CR1 454 558 -1019 503 256 8 23 chrX 56737986 56738119 -105861811 + L3 LINE CR1 778 908 -669 526 281 102 0 chrX 56738263 56738430 -105861500 + MIR SINE MIR 20 203 -59 394 307 15 32 chrX 56740032 56740189 -105859741 + MIR SINE MIR 4 154 -68 185 283 0 0 chrX 56740318 56740364 -105859566 + MIR SINE MIR 105 150 -112 278 0 54 0 chrX 56740463 56740500 -105859430 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 249 272 18 23 chrX 56741476 56741564 -105858366 - MIR3 SINE MIR -19 189 100 647 296 29 19 chrX 56741889 56742095 -105857835 - MIR SINE MIR -43 219 12 333 0 0 0 chrX 56742162 56742199 -105857731 + (TC)n Simple_repeat Simple_repeat 1 37 0 296 348 6 61 chrX 56742234 56742398 -105857532 + L2 LINE L2 3116 3270 -2 298 381 0 19 chrX 56742808 56742963 -105856967 - MIR3 SINE MIR -52 156 5 237 302 39 101 chrX 56743436 56743565 -105856365 + MIR3 SINE MIR 12 132 -76 224 369 12 0 chrX 56743578 56743662 -105856268 + (CCCA)n Simple_repeat Simple_repeat 1 85 0 866 270 24 16 chrX 56743697 56743945 -105855985 + MIR SINE MIR 13 262 0 247 262 90 33 chrX 56743953 56744075 -105855855 - L2 LINE L2 -31 3282 3154 243 335 167 12 chrX 56744281 56744532 -105855398 - L2 LINE L2 -400 2914 2625 425 277 0 0 chrX 56744837 56744931 -105854999 + L2 LINE L2 2981 3074 -239 252 59 0 0 chrX 56745038 56745072 -105854858 + (TC)n Simple_repeat Simple_repeat 2 35 0 234 81 0 0 chrX 56745072 56745109 -105854821 + (CA)n Simple_repeat Simple_repeat 1 37 0 432 295 85 40 chrX 56745296 56745496 -105854434 + MIR SINE MIR 8 216 -46 1166 189 15 54 chrX 56746628 56746888 -105853042 - MIR SINE MIR -12 250 1 248 300 33 0 chrX 56747301 56747361 -105852569 - L2 LINE L2 -5 3267 3206 293 188 353 0 chrX 56747455 56747540 -105852390 + L2 LINE L2 3197 3311 -2 256 306 0 0 chrX 56747784 56747846 -105852084 - L3 LINE CR1 -3 1574 1513 207 296 0 3 chrX 56747942 56748069 -105851861 - L3 LINE CR1 -72 1505 1340 245 341 146 9 chrX 56748349 56748575 -105851355 - L2 LINE L2 -191 3081 2825 323 224 39 128 chrX 56748777 56748933 -105850997 - MER102b DNA MER1_type -18 323 182 670 50 20 10 chrX 56749446 56749545 -105850385 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 231 296 28 46 chrX 56749586 56749694 -105850236 + MER5A DNA MER1_type 1 106 -83 189 320 20 50 chrX 56749784 56749884 -105850046 - MIR3 SINE MIR -34 174 78 287 348 111 21 chrX 56750780 56751059 -105848871 - L2 LINE L2 -411 2903 2600 4471 222 37 34 chrX 56751074 56751553 -105848377 - L1ME1 LINE L1 -137 6029 5553 523 116 105 0 chrX 56751553 56751615 -105848315 + L1PA11 LINE L1 6068 6145 -29 186 43 0 0 chrX 56751615 56751638 -105848292 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 523 116 105 0 chrX 56751638 56751670 -105848260 + L1PA11 LINE L1 6145 6172 -2 4471 222 37 34 chrX 56751670 56753388 -105846542 - L1ME1 LINE L1 -613 5553 3840 7719 19 0 19 chrX 56753388 56754961 -105844969 - L1PA3 LINE L1 0 6155 4596 2945 177 15 36 chrX 56755069 56755787 -105844143 - L1MDa LINE L1 -1182 5358 4656 * 9100 176 49 11 chrX 56755786 56758661 -105841269 + L1MA7 LINE L1 3291 6274 -17 3175 230 72 58 chrX 56758745 56759955 -105839975 - L1MDa LINE L1 -2669 3871 2625 2170 114 0 7 chrX 56759955 56760261 -105839669 - AluSx SINE Alu -7 305 2 3175 230 72 58 chrX 56760261 56760855 -105839075 - L1MDa LINE L1 -3915 2625 2041 406 264 0 0 chrX 56760854 56760983 -105838947 - L1ME1 LINE L1 -2798 3348 3220 * 535 216 22 17 chrX 56760987 56761168 -105838762 + L1MB4 LINE L1 2508 2689 -3457 427 190 40 0 chrX 56761179 56761279 -105838651 + L1MB4 LINE L1 3467 3570 -2576 4968 214 24 14 chrX 56761290 56762921 -105837009 + L1MB4 LINE L1 4023 5668 -512 1263 186 10 0 chrX 56762922 56763126 -105836804 + AluJb SINE Alu 2 207 -105 2474 135 6 62 chrX 56763203 56763707 -105836223 + L1MB4 LINE L1 5654 6129 -51 415 311 112 28 chrX 56763782 56764126 -105835804 - L1MDa LINE L1 -1725 4815 4419 2232 131 14 14 chrX 56764126 56764492 -105835438 + MER47A DNA MER2_type 1 366 0 415 311 112 28 chrX 56764492 56764620 -105835310 - L1MDa LINE L1 -2121 4419 4303 231 333 0 0 chrX 56764625 56764688 -105835242 + L2 LINE L2 3134 3196 -76 35442 39 24 1 chrX 56764702 56770155 -105829775 - L1PA3 LINE L1 0 6155 573 7637 8 0 0 chrX 56770148 56771085 -105828845 - L1HS LINE L1 0 6155 5219 * 2690 27 0 0 chrX 56771085 56771419 -105828511 + L1HS LINE L1 4877 5210 -936 * 4365 58 17 0 chrX 56771412 56771996 -105827934 - L1PA3 LINE L1 -5551 595 2 240 296 0 0 chrX 56771997 56772068 -105827862 - L1MDa LINE L1 -2301 4239 4169 488 128 0 0 chrX 56772093 56772179 -105827751 - L1MB4 LINE L1 -1 6179 6094 4223 135 9 1 chrX 56772179 56772858 -105827072 - L1PA13 LINE L1 -1 6162 5476 15260 162 11 9 chrX 56772861 56776932 -105822998 - L1PA11 LINE L1 -2 6566 2484 385 236 9 9 chrX 56776926 56777032 -105822898 - L1MDa LINE L1 -2374 4166 4061 * 4684 155 32 15 chrX 56777047 56778928 -105821002 - L1MA3 LINE L1 0 6305 4262 * 9100 176 49 11 chrX 56778927 56781802 -105818128 + L1MA7 LINE L1 3291 6274 -17 3175 230 72 58 chrX 56781886 56783096 -105816834 - L1MDa LINE L1 -2669 3871 2625 2170 114 0 7 chrX 56783096 56783402 -105816528 - AluSx SINE Alu -7 305 2 3175 230 72 58 chrX 56783402 56783996 -105815934 - L1MDa LINE L1 -3915 2625 2041 406 264 0 0 chrX 56783995 56784124 -105815806 - L1MA3 LINE L1 -2798 3348 3220 * 535 216 22 17 chrX 56784128 56784309 -105815621 + L1MB4 LINE L1 2508 2689 -3457 427 190 40 0 chrX 56784320 56784420 -105815510 + L1MB4 LINE L1 3467 3570 -2576 4968 214 24 14 chrX 56784431 56786062 -105813868 + L1MB4 LINE L1 4023 5668 -512 1263 186 10 0 chrX 56786063 56786267 -105813663 + AluJb SINE Alu 2 207 -105 2474 135 6 62 chrX 56786344 56786848 -105813082 + L1MB4 LINE L1 5654 6129 -51 409 311 112 28 chrX 56786923 56787267 -105812663 - L1M4 LINE L1 -1725 4421 4025 2232 131 14 14 chrX 56787267 56787633 -105812297 + MER47A DNA MER2_type 1 366 0 409 311 112 28 chrX 56787633 56787761 -105812169 - L1M4 LINE L1 -2121 4025 3909 231 333 0 0 chrX 56787766 56787829 -105812101 + L2 LINE L2 3134 3196 -76 39607 45 22 2 chrX 56787843 56793872 -105806058 - L1PA3 LINE L1 0 6155 2 255 357 0 12 chrX 56793880 56793964 -105805966 + L2 LINE L2 3231 3313 0 204 291 12 35 chrX 56794113 56794199 -105805731 + L2 LINE L2 3185 3268 -4 570 291 117 22 chrX 56794429 56794659 -105805271 - MIR SINE MIR -1 261 10 314 186 29 0 chrX 56794660 56794730 -105805200 + MER112 DNA MER1_type 1 72 -188 248 227 30 0 chrX 56794739 56794805 -105805125 + (TA)n Simple_repeat Simple_repeat 1 68 0 381 247 169 0 chrX 56794805 56794959 -105804971 + MER112 DNA MER1_type 75 254 -6 1428 258 112 22 chrX 56794996 56795684 -105804246 + L2 LINE L2 2557 3310 -3 538 324 98 8 chrX 56796251 56796495 -105803435 + L3 LINE CR1 1213 1478 -99 837 289 99 52 chrX 56796498 56796861 -105803069 + L2 LINE L2 2927 3306 -7 214 286 20 0 chrX 56796870 56796919 -105803011 + L3 LINE CR1 1462 1511 -66 271 167 0 0 chrX 56797034 56797076 -105802854 + 5S rRNA rRNA 1 42 -79 718 284 67 0 chrX 56797076 56797407 -105802523 + L1M4 LINE L1 3719 4071 -2075 16418 60 7 6 chrX 56797625 56800139 -105799791 + L1P2 LINE L1 3150 5652 -502 16413 60 4 27 chrX 56800240 56803171 -105796759 + L1PA5 LINE L1 3237 6154 0 3594 110 0 8 chrX 56805776 56806311 -105793619 - L1PA13 LINE L1 -4 6159 5629 933 189 5 70 chrX 56806411 56806612 -105793318 + MER5A DNA MER1_type 2 189 0 1908 127 63 33 chrX 56807226 56807588 -105792342 - THE1C LTR MaLR 0 375 3 8784 125 4 91 chrX 56807590 56809317 -105790613 - THE1C-int LTR MaLR 0 1580 4 1506 180 55 33 chrX 56809320 56809687 -105790243 - THE1C LTR MaLR 0 375 1 673 286 0 15 chrX 56809689 56809885 -105790045 + MIR SINE MIR 70 262 0 224 231 17 154 chrX 56810018 56810135 -105789795 - MIR SINE MIR -72 136 36 1042 159 5 43 chrX 56810877 56811085 -105788845 + MSTB1 LTR MaLR 1 200 -232 6066 168 40 36 chrX 56811107 56812398 -105787532 + L1PA6 LINE L1 11 1306 -4840 * 27022 73 4 6 chrX 56812394 56816867 -105783063 + L1PA6 LINE L1 1724 6183 0 984 136 7 0 chrX 56816873 56817028 -105782902 + L1PA16 LINE L1 6002 6157 -9 730 220 64 32 chrX 56817037 56817255 -105782675 - L1ME3A LINE L1 -36 6134 5910 1170 208 38 8 chrX 56817261 56817497 -105782433 + MSTB1 LTR MaLR 188 430 -2 227 317 124 31 chrX 56817542 56817703 -105782227 - MIR3 SINE MIR -5 203 28 310 309 0 16 chrX 56818045 56818171 -105781759 - MIR SINE MIR -3 259 136 230 205 77 39 chrX 56818171 56818249 -105781681 - MIR SINE MIR -98 164 84 197 133 0 89 chrX 56818469 56818514 -105781416 - MIR SINE MIR -64 144 104 282 272 79 9 chrX 56818914 56819028 -105780902 + MIR3 SINE MIR 35 156 -52 947 213 202 0 chrX 56819056 56819343 -105780587 + Charlie4a DNA MER1_type 1 345 -163 737 208 26 0 chrX 56819343 56819497 -105780433 - L1MB7 LINE L1 -9 6175 6018 2024 229 57 17 chrX 56819506 56820047 -105779883 - MER90 LTR ERV1 -10 565 3 285 296 19 19 chrX 56820227 56820335 -105779595 - MER90-int LTR ERV1 -160 6641 6534 430 202 44 0 chrX 56820855 56820969 -105778961 - L1MA5A LINE L1 -220 6077 5959 * 1790 229 99 29 chrX 56820952 56821320 -105778610 - L1MDb LINE L1 -2623 3783 3442 3139 73 68 7 chrX 56821320 56821758 -105778172 + MER4C LTR ERV1 1 465 0 2087 188 100 25 chrX 56821758 56822236 -105777694 + LTR44 LTR ERV1 3 517 -2 1790 229 99 29 chrX 56822236 56822553 -105777377 - L1MDb LINE L1 -2963 3443 3049 645 216 9 0 chrX 56822556 56822667 -105777263 + MER21B LTR ERV1 3 114 -749 877 160 0 0 chrX 56822674 56822805 -105777125 + FLAM_C SINE Alu 6 136 -7 3791 179 30 6 chrX 56822805 56823449 -105776481 + MER21B LTR ERV1 106 764 -99 923 265 78 56 chrX 56823524 56823835 -105776095 - L1MDb LINE L1 -3351 3055 2752 2070 134 0 19 chrX 56823835 56824148 -105775782 + AluSx SINE Alu 1 307 -5 923 265 78 56 chrX 56824148 56824342 -105775588 - L1MDb LINE L1 -3654 2752 2564 189 0 0 0 chrX 56824342 56824363 -105775567 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 788 159 0 0 chrX 56824368 56824494 -105775436 - FLAM_C SINE Alu -7 126 1 923 265 78 56 chrX 56824494 56824842 -105775088 - L1MDb LINE L1 -3845 2561 2066 2408 77 13 0 chrX 56824842 56825141 -105774789 - AluSp SINE Alu -10 303 1 923 265 78 56 chrX 56825141 56825272 -105774658 - L1MDb LINE L1 -4340 2066 1939 6354 225 53 40 chrX 56825409 56828385 -105771545 - L1MB7 LINE L1 -28 6156 3138 3949 228 69 19 chrX 56828424 56829799 -105770131 + L1M4 LINE L1 664 2107 -4539 5114 222 29 47 chrX 56829862 56831228 -105768702 + L1M4 LINE L1 21 1361 -5181 917 274 41 16 chrX 56831228 56831666 -105768264 + L1M4 LINE L1 2235 2683 -3963 924 236 17 8 chrX 56831666 56831932 -105767998 + L1M4 LINE L1 2590 2857 -3787 1874 128 67 14 chrX 56831991 56832288 -105767642 - AluSq SINE Alu 0 313 1 2009 245 57 33 chrX 56832311 56833158 -105766772 - L1MDb LINE L1 -5409 1000 9 518 256 74 4 chrX 56833358 56833522 -105766408 - MIR SINE MIR -92 170 2 182 330 71 9 chrX 56833591 56833703 -105766227 - L2 LINE L2 -235 3037 2919 508 42 0 0 chrX 56833882 56833953 -105765977 + L1PA3 LINE L1 6085 6155 0 290 353 60 5 chrX 56834000 56834201 -105765729 - L2 LINE L2 -706 2608 2397 324 306 70 15 chrX 56834201 56834400 -105765530 - L3b LINE CR1 -260 1323 1114 360 225 0 0 chrX 56834913 56834993 -105764937 + MER116 DNA Mariner 1 80 0 261 0 0 0 chrX 56835073 56835102 -105764828 + (CA)n Simple_repeat Simple_repeat 1 29 0 964 213 0 32 chrX 56835141 56835329 -105764601 + MER63A DNA MER1_type 29 210 0 182 294 59 0 chrX 56835329 56835397 -105764533 + L2 LINE L2 3189 3260 -12 205 223 84 54 chrX 56835542 56835656 -105764274 - MIR SINE MIR -76 132 33 27 29 0 0 chrX 56836118 56836152 -105763778 + AT_rich Low_complexity Low_complexity 1 34 0 835 90 0 0 chrX 56836152 56836263 -105763667 - L1MA1 LINE L1 -9 6293 6183 338 328 26 9 chrX 56837507 56837623 -105762307 - MIR SINE MIR -119 143 26 1621 178 42 3 chrX 56837784 56838070 -105761860 + AluJb SINE Alu 1 297 -15 290 378 5 55 chrX 56838097 56838284 -105761646 + L3 LINE CR1 1016 1192 -385 1866 162 47 44 chrX 56838284 56838488 -105761442 + MLT1A1 LTR MaLR 1 208 -157 2122 112 41 0 chrX 56838488 56838782 -105761148 + AluSx SINE Alu 1 306 -6 1866 162 47 44 chrX 56838782 56838941 -105760989 + MLT1A1 LTR MaLR 208 365 0 290 378 5 55 chrX 56838941 56838970 -105760960 + L3 LINE CR1 1192 1221 -356 795 265 242 21 chrX 56839028 56839463 -105760467 + L2 LINE L2 2777 3303 -10 198 273 39 0 chrX 56839480 56839557 -105760373 + L3 LINE CR1 1246 1325 -252 339 213 130 0 chrX 56839720 56839828 -105760102 - MIR3 SINE MIR -54 154 33 205 130 43 22 chrX 56840119 56840165 -105759765 + GA-rich Low_complexity Low_complexity 5 51 0 465 228 83 7 chrX 56841352 56841497 -105758433 + MIR SINE MIR 77 232 -30 263 256 51 0 chrX 56841610 56841688 -105758242 + MIR SINE MIR 81 162 -100 180 0 0 0 chrX 56844975 56844995 -105754935 + (TA)n Simple_repeat Simple_repeat 2 21 0 504 72 0 0 chrX 56847993 56848062 -105751868 + (TG)n Simple_repeat Simple_repeat 2 70 0 396 0 0 0 chrX 56848061 56848105 -105751825 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 218 139 0 47 chrX 56850619 56850662 -105749268 + (TCC)n Simple_repeat Simple_repeat 2 42 0 243 225 0 0 chrX 56850794 56850865 -105749065 + CT-rich Low_complexity Low_complexity 2 72 0 280 266 31 0 chrX 56853338 56853402 -105746528 + G-rich Low_complexity Low_complexity 4 69 0 1878 123 23 43 chrX 56854189 56854490 -105745440 + MER1B DNA MER1_type 45 339 0 382 313 80 6 chrX 56856474 56856650 -105743280 + MIR SINE MIR 56 244 -18 202 255 0 0 chrX 56856760 56856811 -105743119 + MIR SINE MIR 93 143 -65 367 288 45 8 chrX 56857118 56857250 -105742680 - MIR SINE MIR -56 152 16 425 283 71 22 chrX 56858111 56858295 -105741635 + MIR SINE MIR 56 248 -14 294 265 69 3 chrX 56859174 56859295 -105740635 + MIR3 SINE MIR 22 158 -50 387 0 0 0 chrX 56860227 56860270 -105739660 + (CA)n Simple_repeat Simple_repeat 2 44 0 1979 141 0 3 chrX 56860626 56860916 -105739014 - AluJb SINE Alu -23 289 1 234 340 19 10 chrX 56861225 56861328 -105738602 + MIR3 SINE MIR 68 171 -37 198 306 44 13 chrX 56864715 56864842 -105735088 + MIR SINE MIR 21 150 -58 634 294 60 0 chrX 56866552 56866770 -105733160 + MIR SINE MIR 29 259 -3 2414 94 0 0 chrX 56866855 56867164 -105732766 - AluY SINE Alu -2 309 1 188 369 24 0 chrX 56867261 56867345 -105732585 + L2 LINE L2 3186 3271 -1 227 308 42 58 chrX 56867411 56867531 -105732399 - L2 LINE L2 -18 3254 3137 183 279 143 54 chrX 56867520 56867623 -105732307 - L2 LINE L2 -841 2473 2352 * 2434 68 0 0 chrX 56867623 56867915 -105732015 + AluY SINE Alu 1 292 -19 183 279 143 54 chrX 56867915 56867958 -105731972 - L2 LINE L2 -962 2352 2314 * 621 263 16 77 chrX 56867955 56868267 -105731663 + L2 LINE L2 2921 3213 -100 * 1083 256 108 34 chrX 56868260 56868334 -105731596 - L2 LINE L2 -122 3191 3124 2059 157 0 0 chrX 56868334 56868640 -105731290 + 7SLRNA srpRNA srpRNA 2 307 -13 1083 256 108 34 chrX 56868640 56869221 -105730709 - L2 LINE L2 -189 3124 2460 522 325 107 40 chrX 56869239 56869968 -105729962 - L2 LINE L2 -1240 2074 1297 494 201 92 81 chrX 56870041 56870215 -105729715 + MIR SINE MIR 70 245 -17 1462 151 8 0 chrX 56870238 56870489 -105729441 - L1MA7 LINE L1 0 6291 6039 2283 139 41 36 chrX 56870489 56871029 -105728901 - MLT2A2 LTR ERVL -4 550 5 26040 95 6 4 chrX 56871030 56876610 -105723320 - HERVL-A2 LTR ERVL 0 5654 1 2028 161 35 52 chrX 56876616 56877165 -105722765 - MLT2A2 LTR ERVL -10 544 1 393 156 0 83 chrX 56877165 56877261 -105722669 - L1MA7 LINE L1 -244 6047 5960 291 200 0 33 chrX 56877456 56877516 -105722414 + L2 LINE L2 3252 3309 -4 360 243 99 20 chrX 56878230 56878402 -105721528 + MIR SINE MIR 20 203 -59 241 179 30 0 chrX 56878967 56878986 -105720944 + GA-rich Low_complexity Low_complexity 4 21 -51 2154 185 8 0 chrX 56878986 56879348 -105720582 - MLT1A1 LTR MaLR 0 365 1 241 179 30 0 chrX 56879348 56879395 -105720535 + GA-rich Low_complexity Low_complexity 21 72 0 663 248 200 0 chrX 56880734 56880990 -105718940 + LTR33A LTR ERVL 54 344 -179 346 288 153 25 chrX 56880986 56881418 -105718512 + LTR33A LTR ERVL 33 515 -8 * 186 238 79 32 chrX 56883660 56883723 -105716207 + L2 LINE L2 3187 3252 -61 472 305 40 11 chrX 56884667 56884844 -105715086 + MIR SINE MIR 20 201 -61 249 332 82 18 chrX 56884894 56885222 -105714708 + L2 LINE L2 1712 2060 -1254 313 336 89 48 chrX 56885438 56885854 -105714076 + L2 LINE L2 2422 2854 -460 837 185 50 0 chrX 56886077 56886284 -105713646 + MIR SINE MIR 43 261 -1 475 286 8 0 chrX 56886343 56886469 -105713461 - MIR3 SINE MIR -14 194 68 354 300 26 37 chrX 56886513 56886683 -105713247 - MIR SINE MIR -62 146 16 1618 210 107 7 chrX 56887156 56887595 -105712335 - Charlie4a DNA MER1_type -1 507 25 4921 30 0 0 chrX 56888597 56889168 -105710762 - L1PA4 LINE L1 0 6155 5585 274 308 29 0 chrX 56889476 56889580 -105710350 - L3 LINE CR1 -291 1286 1180 191 286 57 0 chrX 56889611 56889681 -105710249 - L3 LINE CR1 -73 1504 1431 2738 201 50 24 chrX 56889902 56890567 -105709363 - L1MD2 LINE L1 -1 6358 5677 3314 252 24 34 chrX 56890575 56891008 -105708922 - L1MD2 LINE L1 -1408 4738 4302 3433 91 23 0 chrX 56891008 56891479 -105708451 + L1PA8 LINE L1 5682 6163 -9 3314 252 24 34 chrX 56891479 56892519 -105707411 - L1MD2 LINE L1 -1844 4302 3327 357 125 0 0 chrX 56892524 56892580 -105707350 + (TA)n Simple_repeat Simple_repeat 1 56 0 4147 171 43 18 chrX 56892581 56892841 -105707089 - L1MB4 LINE L1 -17 6163 5911 369 0 0 0 chrX 56892841 56892882 -105707048 + (TG)n Simple_repeat Simple_repeat 2 42 0 4147 171 43 18 chrX 56892882 56893451 -105706479 - L1MB4 LINE L1 -269 5911 5313 1829 157 15 24 chrX 56893928 56894265 -105705665 - L1MB2 LINE L1 -8 7225 6892 1731 144 153 9 chrX 56894265 56894584 -105705346 - MSTA LTR MaLR -8 420 55 323 91 36 0 chrX 56894584 56894639 -105705291 - MLT2A1 LTR ERVL 0 444 388 277 129 29 0 chrX 56894639 56894709 -105705221 + (TA)n Simple_repeat Simple_repeat 1 72 0 2796 97 27 9 chrX 56894716 56895117 -105704813 - MLT2A1 LTR ERVL -40 475 1 456 69 0 0 chrX 56895117 56895175 -105704755 - MSTA LTR MaLR -370 58 1 3195 176 17 13 chrX 56895175 56896081 -105703849 - L1MB2 LINE L1 -341 6904 5991 4529 163 25 42 chrX 56896081 56897081 -105702849 - MER11C LTR ERVK 0 1071 1 802 213 11 6 chrX 56897082 56897256 -105702674 - L1MB2 LINE L1 -1213 5995 5821 705 191 0 0 chrX 56897282 56897408 -105702522 - L1MB2 LINE L1 -2001 5207 5082 518 217 53 0 chrX 56897407 56897559 -105702371 - L1MB4 LINE L1 -812 5334 5175 * 281 256 184 10 chrX 56897578 56897707 -105702223 - L1MB2 LINE L1 -6703 506 1 1302 249 37 26 chrX 56897719 56898148 -105701782 - L1MB4 LINE L1 -946 5200 4767 3369 179 146 27 chrX 56898158 56898388 -105701542 - L1MA5 LINE L1 -26 6274 6073 1855 201 49 15 chrX 56898388 56898795 -105701135 + MSTB LTR MaLR 2 422 -4 3369 179 146 27 chrX 56898795 56899419 -105700511 - L1MA5 LINE L1 -227 6073 5318 * 8297 182 19 4 chrX 56899411 56901057 -105698873 - L1MA5 LINE L1 -1189 4957 3287 347 43 0 0 chrX 56901060 56901107 -105698823 - L1PA15 LINE L1 -9 6156 6110 15210 235 39 32 chrX 56901112 56907110 -105692820 - L1PA13 LINE L1 -745 6052 2 2498 233 49 50 chrX 56907123 56907811 -105692119 - L1M4c LINE L1 -4516 1787 1099 2340 39 3 3 chrX 56907811 56908096 -105691834 - L1PA4 LINE L1 -4 6151 5867 2498 233 49 50 chrX 56908096 56908110 -105691820 - L1M4c LINE L1 -5204 1099 1086 2702 43 0 0 chrX 56908110 56908415 -105691515 - AluY SINE Alu -6 305 1 2498 233 49 50 chrX 56908415 56908661 -105691269 - L1M4c LINE L1 -5217 1086 777 2442 156 54 75 chrX 56909330 56909995 -105689935 - L1MDb LINE L1 -4754 1652 1002 * 41216 32 21 1 chrX 56909987 56916019 -105683911 - L1PA3 LINE L1 0 6155 1 1885 204 98 60 chrX 56916022 56916984 -105682946 - L1MDb LINE L1 -5311 1098 8 180 316 0 0 chrX 56917115 56917172 -105682758 + MIR SINE MIR 196 252 -10 265 329 0 0 chrX 56917181 56917254 -105682676 - MIR3 SINE MIR -38 170 98 2462 100 105 5 chrX 56917789 56918178 -105681752 + MSTA LTR MaLR 1 428 0 266 261 58 0 chrX 56918356 56918425 -105681505 + L1ME LINE L1 5746 5818 -303 828 240 77 21 chrX 56918770 56919003 -105680927 - MIR SINE MIR -5 257 12 294 73 0 0 chrX 56920080 56920121 -105679809 + (CA)n Simple_repeat Simple_repeat 2 42 0 396 0 0 0 chrX 56921127 56921171 -105678759 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3550 36 9 0 chrX 56921171 56921617 -105678313 - L1PA4 LINE L1 -22 6133 5684 2795 13 0 0 chrX 56924893 56925199 -105674731 + AluY SINE Alu 1 306 -5 719 260 90 23 chrX 56926962 56927210 -105672720 - MIR SINE MIR -4 258 1 275 138 12 88 chrX 56928945 56929025 -105670905 - L1MD1 LINE L1 0 6359 6171 4522 235 61 36 chrX 56929026 56932114 -105667816 + L1MB3 LINE L1 1 3011 -2959 4006 152 19 7 chrX 56932114 56932840 -105667090 + L1MA7 LINE L1 5553 6287 -4 4522 235 61 36 chrX 56932840 56933055 -105666875 + L1MB3 LINE L1 3011 3035 -2935 1087 165 193 8 chrX 56933055 56933309 -105666621 + AluJo SINE Alu 1 301 -1 4522 235 61 36 chrX 56933309 56933676 -105666254 + L1MB3 LINE L1 3035 3391 -2579 13682 115 41 78 chrX 56933683 56936102 -105663828 - L1P3 LINE L1 -2854 3607 1227 2298 110 3 3 chrX 56936102 56936412 -105663518 - AluSg SINE Alu 0 310 1 13682 115 41 78 chrX 56936412 56936827 -105663103 - L1P3 LINE L1 -5234 1227 798 562 170 170 27 chrX 56936830 56936977 -105662953 + L1MB3 LINE L1 3407 3574 -2396 395 218 0 0 chrX 56936977 56937055 -105662875 + L1MB3 LINE L1 3851 3928 -2042 * 2370 213 2 6 chrX 56937053 56937593 -105662337 + L1MB3 LINE L1 4245 4782 -1188 * 12143 117 5 14 chrX 56937590 56939957 -105659973 + L1PA10 LINE L1 3391 5738 -393 1311 93 108 20 chrX 56939957 56940160 -105659770 + L1PA10 LINE L1 5947 6168 0 966 248 51 6 chrX 56940170 56940481 -105659449 + L1MB3 LINE L1 4766 5090 -880 39196 62 4 11 chrX 56940481 56946664 -105653266 + L1PA5 LINE L1 2 6147 -7 1634 159 40 37 chrX 56946676 56947079 -105652851 + L1MB3 LINE L1 5080 5483 -512 1409 173 5 0 chrX 56947082 56947302 -105652628 + AluJo SINE Alu 87 307 -5 1583 166 75 11 chrX 56947307 56947749 -105652181 + L1MB3 LINE L1 5483 5946 -49 250 145 97 0 chrX 56947841 56947903 -105652027 + L1MB3 LINE L1 5937 6004 -3 2443 164 71 54 chrX 56948159 56948775 -105651155 - L1MD1 LINE L1 -72 6564 5938 1626 176 88 65 chrX 56948775 56949299 -105650631 + LTR55 LTR ERV 1 536 -12 348 307 37 31 chrX 56952007 56952170 -105647760 + HERVL74 LTR ERVL 1893 2056 -3629 1881 183 34 6 chrX 56952243 56952598 -105647332 - MLT1A1 LTR MaLR 0 365 1 207 0 0 0 chrX 56952932 56952955 -105646975 + (CA)n Simple_repeat Simple_repeat 2 24 0 4515 156 30 13 chrX 56953039 56954182 -105645748 + L1MB4 LINE L1 5017 6179 -1 287 169 17 0 chrX 56954216 56954275 -105645655 + LTR55 LTR ERV 1 60 -488 40345 36 24 1 chrX 56954275 56960283 -105639647 - L1PA2 LINE L1 -3 6152 2 1333 209 51 68 chrX 56960285 56960755 -105639175 + LTR55 LTR ERV 38 499 -49 630 206 37 26 chrX 56960772 56960949 -105638981 - L1MD1 LINE L1 -811 5942 5783 954 130 0 0 chrX 56962552 56962706 -105637224 + (TA)n Simple_repeat Simple_repeat 1 154 0 1728 161 31 3 chrX 56963525 56963811 -105636119 + AluJb SINE Alu 1 294 -18 2427 251 102 7 chrX 56964724 56965736 -105634194 - L1MD1 LINE L1 -753 5787 4680 828 48 0 0 chrX 56965751 56965856 -105634074 + L1PA4 LINE L1 6051 6155 0 23 0 0 0 chrX 56965909 56965932 -105633998 + AT_rich Low_complexity Low_complexity 1 23 0 1445 88 0 69 chrX 56965943 56966160 -105633770 - AluY SINE Alu -109 202 1 2999 221 23 21 chrX 56966407 56967316 -105632614 - L1M4 LINE L1 -1116 5030 4120 9952 120 52 106 chrX 56967359 56968188 -105631742 - Tigger1 DNA MER2_type -4 2414 1542 8438 60 7 8 chrX 56968188 56970087 -105629843 - L1PA6 LINE L1 -2 6152 4261 9952 120 52 106 chrX 56970087 56971436 -105628494 - Tigger1 DNA MER2_type -876 1542 353 8266 220 48 31 chrX 56971436 56973233 -105626697 - L1PA13 LINE L1 -4958 1829 1 8118 202 89 68 chrX 56973243 56974093 -105625837 - L1MD1 LINE L1 -3890 2650 1819 1864 166 0 3 chrX 56974093 56974383 -105625547 + AluJb SINE Alu 1 289 -23 8118 202 89 68 chrX 56974383 56974557 -105625373 - L1MD1 LINE L1 -4721 1819 1650 1951 134 0 4 chrX 56974557 56974833 -105625097 + AluSx SINE Alu 1 275 -37 8118 202 89 68 chrX 56974833 56976492 -105623438 - L1MD1 LINE L1 -4890 1650 31 2009 104 97 0 chrX 56976521 56976800 -105623130 - AluSx SINE Alu -6 306 1 332 198 74 93 chrX 56976956 56977118 -105622812 + L1M4 LINE L1 1 159 -6383 7562 37 0 0 chrX 56977125 56978088 -105621842 - L1P LINE L1 -895 5251 4289 4136 257 47 31 chrX 56978097 56979570 -105620360 + L1M4 LINE L1 164 1659 -4883 1300 187 12 0 chrX 56979567 56979824 -105620106 - L1 LINE L1 -2083 4063 3804 * 1049 201 193 0 chrX 56979862 56980106 -105619824 - AluSx SINE Alu -11 301 11 1291 167 18 4 chrX 56980119 56980400 -105619530 - L1 LINE L1 -2390 3756 3472 397 326 21 20 chrX 56980427 56980673 -105619257 + L1MA6 LINE L1 467 961 -6207 10755 175 35 25 chrX 56981014 56981902 -105618028 + L1MA6 LINE L1 3281 4158 -3163 1667 208 10 7 chrX 56981902 56982210 -105617720 + AluJo SINE Alu 3 311 -1 10755 175 35 25 chrX 56982210 56982221 -105617709 + L1MA6 LINE L1 4158 4167 -3154 1879 159 3 7 chrX 56982221 56982530 -105617400 + AluJo SINE Alu 1 308 -4 657 84 9 19 chrX 56982530 56982637 -105617293 + LTR7 LTR ERV1 307 412 -38 10755 175 35 25 chrX 56982637 56983697 -105616233 + L1MA6 LINE L1 4167 5214 -2107 1902 206 53 17 chrX 56983697 56984114 -105615816 - Tigger2a DNA MER2_type 0 434 3 10755 175 35 25 chrX 56984114 56985792 -105614138 + L1MA6 LINE L1 5214 6951 -370 1333 204 40 6 chrX 56985842 56986166 -105613764 + L1M4 LINE L1 3949 4283 -1863 192 222 0 67 chrX 56986897 56986942 -105612988 + MIR3 SINE MIR 113 154 -54 * 329 276 179 32 chrX 56986939 56987095 -105612835 + MIR3 SINE MIR 19 197 -11 705 272 80 18 chrX 56987659 56987883 -105612047 - MIR SINE MIR -5 257 20 935 256 14 97 chrX 56988470 56988736 -105611194 - MER102b DNA MER1_type -1088 340 112 1365 97 0 15 chrX 56988736 56988942 -105610988 + L1PB1 LINE L1 5949 6151 0 935 256 14 97 chrX 56988942 56989046 -105610884 - MER102b DNA MER1_type -1316 112 1 336 289 29 10 chrX 56989111 56989215 -105610715 - MIR SINE MIR -50 212 107 636 155 86 0 chrX 56989822 56989938 -105609992 + MER3 DNA MER1_type 6 131 -78 183 114 0 0 chrX 56989938 56989973 -105609957 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 309 277 202 0 chrX 56989985 56990079 -105609851 + L2 LINE L2 3201 3313 0 1316 322 159 52 chrX 56990178 56992820 -105607110 + L2 LINE L2 307 3234 -38 2214 125 0 0 chrX 56992954 56993251 -105606679 - AluSq SINE Alu -16 297 1 189 308 29 67 chrX 56993319 56993423 -105606507 - L2 LINE L2 -7 3306 3207 252 383 102 33 chrX 56993486 56993760 -105606170 + L2 LINE L2 2942 3234 -38 21 0 0 0 chrX 56994312 56994333 -105605597 + AT_rich Low_complexity Low_complexity 1 21 0 1946 135 4 0 chrX 56994335 56994609 -105605321 + AluSx SINE Alu 1 275 -37 200 31 62 0 chrX 56994613 56994645 -105605285 + A-rich Low_complexity Low_complexity 1 34 0 256 268 268 8 chrX 56995768 56995891 -105604039 - L2 LINE L2 0 3313 3159 235 198 99 88 chrX 56996021 56996112 -105603818 - L2 LINE L2 0 3272 3181 1456 342 107 30 chrX 56996195 56997627 -105602303 - L2 LINE L2 -237 3035 1489 727 272 174 3 chrX 56998590 56998895 -105601035 + L1ME4a LINE L1 5382 5738 -2070 444 257 66 90 chrX 56998904 56999016 -105600914 + L1ME4a LINE L1 5791 5904 -217 2513 81 0 0 chrX 56999016 56999323 -105600607 + AluSq SINE Alu 1 307 -6 444 257 66 90 chrX 56999323 56999398 -105600532 + L1ME4a LINE L1 5904 5979 -142 1190 148 25 0 chrX 56999398 56999600 -105600330 - MER3 DNA MER1_type -2 207 1 444 257 66 90 chrX 56999600 56999746 -105600184 + L1ME4a LINE L1 5979 6117 -4 514 351 86 17 chrX 56999876 57000235 -105599695 - L2 LINE L2 -537 2777 2394 621 215 25 0 chrX 57001221 57001342 -105598588 - MIR3 SINE MIR -43 165 42 402 274 27 62 chrX 57001613 57001759 -105598171 - MIR3 SINE MIR -62 146 6 1623 179 13 45 chrX 57003430 57003738 -105596192 - AluJo SINE Alu -14 298 1 189 0 0 0 chrX 57004361 57004382 -105595548 + (TAA)n Simple_repeat Simple_repeat 2 22 0 714 279 73 5 chrX 57004724 57004928 -105595002 - MIR SINE MIR -10 252 35 394 222 111 0 chrX 57007640 57007739 -105592191 - MIR SINE MIR -142 120 11 195 114 0 0 chrX 57007909 57007944 -105591986 + (TA)n Simple_repeat Simple_repeat 2 36 0 1807 181 39 36 chrX 57009291 57009839 -105590091 - MLT2A2 LTR ERVL -7 547 3 2129 195 12 7 chrX 57009864 57010285 -105589645 + MER68 LTR ERV1 140 562 0 445 339 161 32 chrX 57010286 57010844 -105589086 + L2 LINE L2 2232 2861 -453 1675 160 20 5 chrX 57010856 57011484 -105588446 + L1MA3 LINE L1 4824 5569 -731 1558 182 79 4 chrX 57011485 57011765 -105588165 + AluJo SINE Alu 1 301 -11 2620 159 35 12 chrX 57011766 57012283 -105587647 + L1MA3 LINE L1 5777 6305 0 269 231 0 0 chrX 57012424 57012476 -105587454 + L2 LINE L2 3262 3313 0 523 273 154 14 chrX 57013730 57013950 -105585980 - MIR SINE MIR -10 252 2 236 376 17 17 chrX 57014633 57014750 -105585180 - MIR SINE MIR -118 144 28 1680 169 0 11 chrX 57015247 57015526 -105584404 - AluJo SINE Alu -15 297 22 630 267 27 0 chrX 57015954 57016104 -105583826 - MIR3 SINE MIR -11 197 44 830 267 42 38 chrX 57016237 57016477 -105583453 - MIR SINE MIR -21 241 1 330 153 0 0 chrX 57016640 57016699 -105583231 + (CA)n Simple_repeat Simple_repeat 2 60 0 279 316 0 0 chrX 57016752 57016831 -105583099 + MER5A DNA MER1_type 2 80 -109 * 315 271 0 0 chrX 57016828 57016898 -105583032 - MER5A DNA MER1_type -108 81 12 234 136 0 0 chrX 57017742 57017786 -105582144 + (A)n Simple_repeat Simple_repeat 1 44 0 250 261 69 0 chrX 57017817 57017947 -105581983 + L1ME LINE L1 2110 2248 -3898 1318 290 123 37 chrX 57017968 57020236 -105579694 + L1ME LINE L1 2290 4752 -1394 234 0 0 0 chrX 57020291 57020317 -105579613 + (A)n Simple_repeat Simple_repeat 1 26 0 364 333 65 28 chrX 57020317 57020618 -105579312 + L1ME LINE L1 4783 5099 -1047 316 303 58 28 chrX 57020625 57021030 -105578900 + L1ME LINE L1 5211 5629 -492 2031 169 34 5 chrX 57021057 57021435 -105578495 + MSTA LTR MaLR 1 389 -39 35995 87 5 7 chrX 57021442 57027592 -105572338 + L1PA6 LINE L1 11 6147 -7 306 128 0 0 chrX 57027592 57027639 -105572291 + MSTA LTR MaLR 375 421 -7 346 172 0 0 chrX 57028446 57028504 -105571426 + Tigger3(Golem) DNA MER2_type 2 59 -2970 826 114 100 14 chrX 57028505 57028645 -105571285 + Tigger3(Golem) DNA MER2_type 2887 3038 0 1586 177 21 18 chrX 57028690 57028973 -105570957 + AluJo SINE Alu 1 284 -28 392 298 139 24 chrX 57029027 57029398 -105570532 + L1MC/D LINE L1 5269 5668 -614 290 288 85 38 chrX 57029421 57029657 -105570273 + L1ME LINE L1 5563 5809 -312 34 55 0 0 chrX 57029760 57029815 -105570115 + AT_rich Low_complexity Low_complexity 1 55 0 2731 203 38 42 chrX 57029942 57030680 -105569250 - L1MD2 LINE L1 -1 6358 5624 701 270 54 31 chrX 57030846 57031051 -105568879 - MIR SINE MIR -34 228 16 2037 152 134 11 chrX 57031051 57031432 -105568498 + MSTA LTR MaLR 1 428 0 701 270 54 31 chrX 57031432 57031448 -105568482 - MIR SINE MIR -246 16 2 235 324 7 72 chrX 57031838 57031977 -105567953 - L2 LINE L2 -5 3308 3179 343 339 55 0 chrX 57032229 57032338 -105567592 - L2 LINE L2 -3 3269 3155 1118 229 148 22 chrX 57032461 57032867 -105567063 + MLT1D LTR MaLR 1 457 -48 180 0 0 0 chrX 57032867 57032887 -105567043 + (A)n Simple_repeat Simple_repeat 1 20 0 1673 161 38 14 chrX 57032897 57033189 -105566741 + AluJb SINE Alu 1 299 -13 362 254 8 0 chrX 57033189 57033307 -105566623 + L1M4 LINE L1 2275 2393 -3753 1730 179 8 27 chrX 57033312 57033628 -105566302 + MLT1A1 LTR MaLR 5 325 -40 2288 106 144 8 chrX 57033628 57034004 -105565926 + MSTA LTR MaLR 2 428 0 9133 139 19 41 chrX 57034006 57035620 -105564310 + MSTA-int LTR MaLR 3 1580 0 1905 168 134 8 chrX 57035620 57036000 -105563930 + MSTA LTR MaLR 1 428 0 1730 179 8 27 chrX 57036000 57036047 -105563883 + MLT1A1 LTR MaLR 324 365 0 1288 219 0 0 chrX 57036103 57036340 -105563590 - AluJo SINE Alu -75 237 1 3816 221 34 16 chrX 57036354 57037209 -105562721 + L1M4 LINE L1 2866 3749 -2397 1725 147 53 73 chrX 57037209 57037605 -105562325 - MLT1B LTR MaLR 0 390 3 3816 221 34 16 chrX 57037605 57037896 -105562034 + L1M4 LINE L1 3749 4033 -2113 547 213 155 7 chrX 57038182 57038337 -105561593 - MER5B DNA MER1_type 0 178 1 11426 39 1 3 chrX 57038417 57040592 -105559338 - L1PA4 LINE L1 -3 6152 3984 652 220 153 0 chrX 57040626 57040776 -105559154 - MER5B DNA MER1_type 0 178 6 210 238 150 12 chrX 57040857 57040937 -105558993 - MIR SINE MIR -1 261 171 33 107 0 0 chrX 57041176 57041307 -105558623 + AT_rich Low_complexity Low_complexity 1 131 0 1977 157 29 0 chrX 57041307 57041652 -105558278 - MSTA LTR MaLR -73 355 1 9374 168 16 6 chrX 57041652 57043286 -105556644 - MSTA-int LTR MaLR 0 1651 1 2743 134 21 0 chrX 57043286 57043705 -105556225 - MSTA LTR MaLR 0 428 1 1186 179 188 22 chrX 57043705 57044114 -105555816 + LTR54B LTR ERV1 20 496 -2 1738 177 0 32 chrX 57044582 57044892 -105555038 + AluJb SINE Alu 2 301 -11 269 325 12 0 chrX 57045495 57045578 -105554352 + GA-rich Low_complexity Low_complexity 5 88 0 252 210 34 17 chrX 57045595 57045714 -105554216 + GA-rich Low_complexity Low_complexity 4 124 0 429 189 85 9 chrX 57046560 57046666 -105553264 + MER103 DNA DNA 1 114 -52 668 221 160 30 chrX 57046797 57047028 -105552902 + MIR SINE MIR 2 262 0 568 239 9 0 chrX 57047023 57047136 -105552794 - MIR SINE MIR -64 144 31 * 182 214 0 0 chrX 57047554 57047596 -105552334 - MIR SINE MIR -3 259 218 289 302 132 0 chrX 57047633 57047739 -105552191 - MIR SINE MIR -142 120 1 496 216 9 52 chrX 57048298 57048414 -105551516 + MIR3 SINE MIR 58 168 -40 719 155 12 71 chrX 57048435 57048480 -105551450 - L1MB7 LINE L1 -9 6175 6129 1780 155 0 24 chrX 57048480 57048776 -105551154 - AluJb SINE Alu -21 291 3 719 155 12 71 chrX 57048776 57048898 -105551032 - L1MB7 LINE L1 -55 6129 6018 1208 208 13 9 chrX 57049481 57049712 -105550218 - MIR SINE MIR -17 245 14 1505 209 132 19 chrX 57049982 57050398 -105549532 + L1ME3A LINE L1 5569 6059 -111 197 33 33 0 chrX 57050398 57050428 -105549502 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1505 209 132 19 chrX 57050428 57050542 -105549388 + L1ME3A LINE L1 6059 6159 -11 643 248 29 34 chrX 57050973 57051179 -105548751 + MIR SINE MIR 58 262 0 586 228 9 112 chrX 57051693 57051780 -105548150 - MIR SINE MIR -50 212 118 2153 111 39 28 chrX 57051780 57052140 -105547790 - THE1B LTR MaLR 0 364 1 586 228 9 112 chrX 57052140 57052267 -105547663 - MIR SINE MIR -144 118 20 206 97 0 0 chrX 57053598 57053629 -105546301 + MIR SINE MIR 73 103 -159 641 271 24 18 chrX 57053859 57054029 -105545901 + MIR3 SINE MIR 21 191 -17 605 293 98 66 chrX 57054166 57054609 -105545321 + L2 LINE L2 1715 2191 -1123 2548 126 31 5 chrX 57054609 57055022 -105544908 + MSTA LTR MaLR 2 425 -3 605 293 98 66 chrX 57055022 57055295 -105544635 + L2 LINE L2 2191 2454 -860 493 269 142 35 chrX 57055305 57055502 -105544428 + MIR SINE MIR 4 221 -41 4633 258 69 33 chrX 57055527 57056294 -105543636 + L2 LINE L2 1326 2064 -1249 2906 0 0 0 chrX 57056294 57056605 -105543325 - AluYa5 SINE Alu 0 311 1 4633 258 69 33 chrX 57056605 57056899 -105543031 + L2 LINE L2 2064 2346 -967 1094 215 23 101 chrX 57056899 57057295 -105542635 - MLT1A1 LTR MaLR 0 365 1 4633 258 69 33 chrX 57057295 57057439 -105542491 + L2 LINE L2 2346 2483 -830 1602 175 19 35 chrX 57057439 57057754 -105542176 - AluJo SINE Alu -2 310 1 4633 258 69 33 chrX 57057754 57058192 -105541738 + L2 LINE L2 2483 3029 -284 26400 32 1 1 chrX 57058200 57062116 -105537814 + L1PA3 LINE L1 2257 6171 0 826 244 76 36 chrX 57062117 57062392 -105537538 + L2 LINE L2 3023 3308 -5 527 244 30 15 chrX 57062665 57062796 -105537134 + L2 LINE L2 3179 3311 -2 219 315 55 0 chrX 57062823 57062896 -105537034 - L2 LINE L2 -639 2675 2599 342 0 0 0 chrX 57064037 57064075 -105535855 + (TG)n Simple_repeat Simple_repeat 2 39 0 2722 173 2 2 chrX 57064167 57064595 -105535335 - MSTA LTR MaLR 0 428 1 9470 176 31 7 chrX 57064595 57066207 -105533723 - MSTA-int LTR MaLR 0 1651 1 2567 144 2 51 chrX 57066207 57066247 -105533683 - MSTA LTR MaLR 0 428 388 8694 64 0 1 chrX 57066247 57068104 -105531826 + L1PA6 LINE L1 4290 6153 -1 2567 144 2 51 chrX 57068104 57068513 -105531417 - MSTA LTR MaLR -40 388 1 805 166 14 7 chrX 57068592 57068731 -105531199 - L1PA13 LINE L1 -7 6156 6017 15758 177 94 52 chrX 57068731 57072300 -105527630 - L1PA14 LINE L1 -15 7584 4165 1884 144 183 19 chrX 57072300 57072667 -105527263 + MSTA LTR MaLR 1 427 -1 15758 177 94 52 chrX 57072667 57073917 -105526013 - L1PA14 LINE L1 -3434 4165 2968 264 30 0 0 chrX 57073917 57073950 -105525980 + (TG)n Simple_repeat Simple_repeat 2 34 0 15758 177 94 52 chrX 57073950 57076518 -105523412 - L1PA14 LINE L1 -4631 2968 508 633 32 21 11 chrX 57076518 57076611 -105523319 + (TTTTC)n Simple_repeat Simple_repeat 2 95 0 2196 82 20 3 chrX 57076615 57076907 -105523023 - AluSg1 SINE Alu -12 297 1 15758 177 94 52 chrX 57076907 57077045 -105522885 - L1PA14 LINE L1 -7093 506 1 5188 159 15 8 chrX 57077049 57078355 -105521575 - L1PA12 LINE L1 -132 6036 4718 335 168 69 0 chrX 57078394 57078472 -105521458 + MIR3 SINE MIR 100 186 -22 252 325 81 32 chrX 57078497 57078620 -105521310 + L2 LINE L2 2999 3127 -145 285 98 0 0 chrX 57079189 57079230 -105520700 + (CA)n Simple_repeat Simple_repeat 1 41 0 1455 203 25 0 chrX 57079286 57079608 -105520322 - MER33 DNA MER1_type 0 324 1 732 280 82 14 chrX 57079765 57080104 -105519826 - L2 LINE L2 -32 3281 2872 492 241 101 25 chrX 57080190 57080348 -105519582 - L3 LINE CR1 -526 1051 882 1439 215 54 17 chrX 57081249 57081602 -105518328 - LTR8A LTR ERV1 0 727 362 * 3829 144 30 65 chrX 57081600 57082224 -105517706 + MER50 LTR ERV1 29 627 -107 3917 12 0 0 chrX 57082224 57082642 -105517288 - L1PA2 LINE L1 0 6155 5738 3829 144 30 65 chrX 57082642 57082724 -105517206 + MER50 LTR ERV1 627 710 -24 210 291 0 0 chrX 57082874 57082929 -105517001 + MIR SINE MIR 99 153 -55 3680 143 53 5 chrX 57083008 57083590 -105516340 - MER4B LTR ERV1 0 610 1 1793 156 14 14 chrX 57083844 57084139 -105515791 + AluJo SINE Alu 5 299 -13 546 130 40 10 chrX 57084142 57084242 -105515688 + MER4A LTR ERV1 1 103 -561 419 39 19 0 chrX 57084239 57084291 -105515639 + MER4A LTR ERV1 261 313 -351 * 500 144 10 52 chrX 57084282 57084379 -105515551 + MER4A LTR ERV1 572 664 0 3053 98 212 25 chrX 57084381 57085028 -105514902 + MER4A-int LTR ERV1 1 834 -5764 621 130 43 17 chrX 57085093 57085208 -105514722 + MER4A-int LTR ERV1 1262 1379 -5219 311 248 238 0 chrX 57085205 57085306 -105514624 + MER4A-int LTR ERV1 2037 2161 -4170 * 195 42 0 0 chrX 57085367 57085391 -105514539 + (T)n Simple_repeat Simple_repeat 1 24 0 4404 121 15 18 chrX 57085392 57086044 -105513886 + MER4A-int LTR ERV1 198 847 -5911 1474 104 78 23 chrX 57086051 57086319 -105513611 + MER4A-int LTR ERV1 924 1825 -2460 4420 77 55 35 chrX 57086330 57087055 -105512875 + MER4A-int LTR ERV1 1756 2495 -4103 1383 148 74 0 chrX 57087055 57087284 -105512646 - LTR8 LTR ERV1 -434 257 12 3787 106 74 35 chrX 57087289 57088115 -105511815 + MER4A-int LTR ERV1 2731 3681 -2917 * 11302 110 78 15 chrX 57088114 57090002 -105509928 + MER4A-int LTR ERV1 3837 5842 -756 4338 128 63 12 chrX 57093510 57094245 -105505685 + MER4A-int LTR ERV1 5825 6596 -2 582 135 21 10 chrX 57094253 57094349 -105505581 + MER4A LTR ERV1 1 97 -567 * 1583 149 174 76 chrX 57094346 57094714 -105505216 + MER4A LTR ERV1 257 660 -4 239 163 0 0 chrX 57094767 57094810 -105505120 - L2 LINE L2 0 3313 3271 604 234 23 137 chrX 57094864 57094982 -105504948 - L2 LINE L2 0 3313 3183 3088 131 33 31 chrX 57094982 57095471 -105504459 - LTR2B LTR ERV1 0 490 1 604 234 23 137 chrX 57095471 57095659 -105504271 - L2 LINE L2 -130 3183 3042 2154 162 94 27 chrX 57095667 57096105 -105503825 - LTR8A LTR ERV1 -257 462 1 1053 202 24 113 chrX 57096105 57096441 -105503489 - L2 LINE L2 -853 2461 2156 3312 143 72 44 chrX 57096463 57097058 -105502872 + LTR9 LTR ERV1 1 612 0 694 269 66 15 chrX 57097071 57097268 -105502662 + MER63A DNA MER1_type 1 207 -3 234 0 0 0 chrX 57097362 57097388 -105502542 + (A)n Simple_repeat Simple_repeat 1 26 0 729 353 91 41 chrX 57097799 57098612 -105501318 + L2 LINE L2 2422 3272 0 683 186 0 25 chrX 57098634 57098752 -105501178 + AluJo SINE Alu 26 140 -172 1868 168 11 0 chrX 57098752 57099038 -105500892 + AluSx SINE Alu 1 289 -23 857 182 27 0 chrX 57099052 57099200 -105500730 + AluJo SINE Alu 122 273 -39 819 43 26 0 chrX 57099205 57099321 -105500609 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 288 111 0 0 chrX 57099324 57099369 -105500561 - L1 LINE L1 -3815 2331 2287 254 259 21 84 chrX 57099417 57099560 -105500370 - L1MC4 LINE L1 -1295 6747 6614 400 183 0 17 chrX 57099560 57099675 -105500255 + (TA)n Simple_repeat Simple_repeat 2 114 0 6422 140 61 17 chrX 57099763 57101065 -105498865 + L1PB1 LINE L1 1904 3268 -3594 1679 114 12 0 chrX 57101055 57101301 -105498629 + L1PB1 LINE L1 6242 6490 -377 * 2245 112 3 0 chrX 57101303 57101607 -105498323 + L1PB1 LINE L1 6562 6866 -1 2064 191 95 98 chrX 57101922 57101973 -105497957 - MLT1E2 LTR MaLR 0 626 576 1321 205 21 42 chrX 57101973 57102296 -105497634 - AluJo SINE Alu 0 317 1 2064 191 95 98 chrX 57102296 57102866 -105497064 - MLT1E2 LTR MaLR -50 576 5 377 356 53 39 chrX 57102891 57103172 -105496758 + L2 LINE L2 2469 2753 -561 2287 101 3 0 chrX 57103653 57103951 -105495979 + AluSp SINE Alu 1 299 -14 244 234 0 0 chrX 57104126 57104173 -105495757 - Charlie8 DNA MER1_type 0 2417 2371 473 222 118 7 chrX 57104192 57104336 -105495594 - MIR SINE MIR -62 200 41 670 320 134 12 chrX 57105522 57105866 -105494064 + L2 LINE L2 2790 3172 -141 1997 173 24 29 chrX 57105878 57106253 -105493677 - THE1C LTR MaLR 0 375 3 2174 114 9 18 chrX 57106255 57106587 -105493343 - THE1C-int LTR MaLR 0 1580 1252 3483 163 0 0 chrX 57306587 57307144 -105292786 - MSTA-int LTR MaLR -1094 557 1 2404 128 116 21 chrX 57307147 57307536 -105292394 - MSTA LTR MaLR -2 426 1 3340 208 58 15 chrX 57307538 57308453 -105291477 + L1M4 LINE L1 4513 5467 -707 2965 152 22 2 chrX 57308453 57308901 -105291029 - MSTB2 LTR MaLR 0 457 1 3340 208 58 15 chrX 57308901 57308948 -105290982 + L1M4 LINE L1 5467 5511 -663 185 366 97 21 chrX 57309070 57309163 -105290767 - L2 LINE L2 -9 3263 3164 264 267 73 12 chrX 57309310 57309475 -105290455 + L1ME3 LINE L1 5217 5391 -755 40 0 0 0 chrX 57309479 57309519 -105290411 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chrX 57309575 57309615 -105290315 + AT_rich Low_complexity Low_complexity 1 40 0 30400 107 15 23 chrX 57309634 57315972 -105283958 + L1PA7 LINE L1 91 6465 -4 2538 161 68 2 chrX 57316742 57317209 -105282721 - L1MB4 LINE L1 0 6180 5683 993 224 163 10 chrX 57317374 57317687 -105282243 + L1ME3 LINE L1 5584 5944 -218 289 106 21 0 chrX 57317844 57317891 -105282039 + L1ME3 LINE L1 5920 5967 -195 4672 154 21 10 chrX 57317891 57318688 -105281242 + L1MC1 LINE L1 5528 6333 0 293 85 0 0 chrX 57318690 57318737 -105281193 + L1M4b LINE L1 1514 1560 -5299 3081 250 69 49 chrX 57318737 57319712 -105280218 + L1M4 LINE L1 10 1003 -5539 3264 226 21 3 chrX 57319770 57320638 -105279292 + L1M4 LINE L1 3249 4131 -2513 3776 170 9 18 chrX 57320640 57321693 -105278237 - L1P5 LINE L1 -531 5620 4570 2191 144 0 0 chrX 57321693 57322005 -105277925 + AluSx SINE Alu 1 312 0 3359 138 27 13 chrX 57322031 57322683 -105277247 - MER83C-int LTR ERV1 -804 4076 2370 8012 168 43 4 chrX 57322683 57324054 -105275876 - MER83C-int LTR ERV1 -3399 1481 58 1274 199 4 0 chrX 57324166 57324392 -105275538 - MER83C LTR ERV1 0 373 147 847 191 0 86 chrX 57324637 57324762 -105275168 + L1MB7 LINE L1 5975 6076 -108 2155 136 7 0 chrX 57324762 57325072 -105274858 - AluSq SINE Alu -1 312 1 847 191 0 86 chrX 57325072 57325156 -105274774 + L1MB7 LINE L1 6076 6166 -18 265 183 17 104 chrX 57325168 57325283 -105274647 + L1M4b LINE L1 1543 1647 -5208 * 423 286 65 49 chrX 57325271 57325516 -105274414 + L1M4b LINE L1 2452 2700 -4438 354 258 149 55 chrX 57325569 57325646 -105274284 + L1M4b LINE L1 2567 2635 -4503 245 75 25 0 chrX 57325646 57325686 -105274244 + (TA)n Simple_repeat Simple_repeat 1 41 0 354 258 149 55 chrX 57325686 57325937 -105273993 + L1M4b LINE L1 2635 2926 -4212 1319 90 6 11 chrX 57326975 57327153 -105272777 + L1PB1 LINE L1 5973 6149 -2 666 185 104 38 chrX 57327262 57327473 -105272457 - L2 LINE L2 0 3313 3089 665 250 58 34 chrX 57327470 57327678 -105272252 + MIR SINE MIR 49 261 -1 * 2038 290 41 48 chrX 57327678 57328247 -105271683 - L2 LINE L2 -213 3100 2529 1903 147 0 0 chrX 57328247 57328526 -105271404 + AluSx SINE Alu 1 279 -33 207 0 0 0 chrX 57328532 57328555 -105271375 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2038 290 41 48 chrX 57328555 57328896 -105271034 - L2 LINE L2 -789 2524 2182 641 229 173 0 chrX 57329296 57329475 -105270455 + MIR SINE MIR 53 262 0 824 174 0 21 chrX 57329671 57329855 -105270075 - AluSg/x SINE Alu 0 319 139 388 75 0 0 chrX 57329855 57329908 -105270022 + MADE1 DNA Mariner 28 80 0 1526 166 126 7 chrX 57329908 57330186 -105269744 - MER21B LTR ERV1 -552 311 1 737 220 116 0 chrX 57330186 57330359 -105269571 - L1ME3A LINE L1 -340 5830 5638 1461 154 51 45 chrX 57330375 57330686 -105269244 - L1MD1 LINE L1 0 6242 5930 2012 181 108 26 chrX 57330726 57330762 -105269168 - MLT1D LTR MaLR -44 461 429 4053 136 34 7 chrX 57330762 57331380 -105268550 + MER41B LTR ERV1 1 635 0 2012 181 108 26 chrX 57331380 57331769 -105268161 - MLT1D LTR MaLR -76 429 1 180 0 0 0 chrX 57331807 57331827 -105268103 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 434 269 164 0 chrX 57332065 57332199 -105267731 - MER5B DNA MER1_type -22 156 1 1599 127 68 12 chrX 57332265 57332517 -105267413 + AluSx SINE Alu 14 279 -33 219 36 0 0 chrX 57332527 57332555 -105267375 + (GA)n Simple_repeat Simple_repeat 2 29 0 1214 39 13 0 chrX 57332555 57332710 -105267220 + (GGAA)n Simple_repeat Simple_repeat 4 160 0 277 95 24 0 chrX 57332805 57332847 -105267083 + MIR SINE MIR 112 154 -108 355 262 28 9 chrX 57333237 57333344 -105266586 + MIR SINE MIR 84 192 -70 23 0 0 0 chrX 57335808 57335831 -105264099 + AT_rich Low_complexity Low_complexity 1 23 0 279 315 45 0 chrX 57336499 57336588 -105263342 + MIR SINE MIR 93 185 -77 300 342 102 36 chrX 57337540 57337736 -105262194 + MIR SINE MIR 36 244 -18 278 248 9 35 chrX 57338450 57338563 -105261367 + CT-rich Low_complexity Low_complexity 1 110 0 2275 91 0 7 chrX 57338631 57338929 -105261001 + AluY SINE Alu 1 296 -15 235 289 92 3 chrX 57339091 57339202 -105260728 + MIR SINE MIR 47 143 -65 415 219 69 37 chrX 57339393 57339623 -105260307 + L2 LINE L2 3028 3242 -71 515 276 59 20 chrX 57340179 57340331 -105259599 - MIR3 SINE MIR -31 177 20 611 267 25 6 chrX 57340878 57341039 -105258891 + MIR SINE MIR 51 214 -48 1739 104 127 8 chrX 57341413 57341673 -105258257 + AluSg1 SINE Alu 1 291 -18 958 108 0 58 chrX 57342293 57342432 -105257498 - FLAM_C SINE Alu -2 131 1 1753 134 25 28 chrX 57342879 57343199 -105256731 - MER33 DNA MER1_type -2 322 4 191 36 36 0 chrX 57343994 57344022 -105255908 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2320 65 0 0 chrX 57346774 57347053 -105252877 + AluY SINE Alu 1 279 -32 205 51 51 0 chrX 57347054 57347093 -105252837 + A-rich Low_complexity Low_complexity 2 42 0 185 214 0 24 chrX 57347570 57347612 -105252318 - MIR SINE MIR -3 259 219 602 295 39 10 chrX 57347763 57347970 -105251960 - MIR SINE MIR -26 236 24 291 130 0 0 chrX 57348726 57348780 -105251150 + (CA)n Simple_repeat Simple_repeat 2 55 0 340 266 312 20 chrX 57348877 57349076 -105250854 - MIR SINE MIR 0 262 6 385 341 11 17 chrX 57349311 57349487 -105250443 + MIR3 SINE MIR 25 199 -9 222 118 0 0 chrX 57349932 57349966 -105249964 + (GA)n Simple_repeat Simple_repeat 1 34 0 530 167 33 120 chrX 57350065 57350215 -105249715 + MSTB2 LTR MaLR 1 137 -320 * 677 214 12 65 chrX 57350212 57350380 -105249550 + MSTB2 LTR MaLR 289 447 -10 2010 129 0 4 chrX 57350380 57350660 -105249270 + AluY SINE Alu 1 279 -32 250 44 22 22 chrX 57350662 57350707 -105249223 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2377 91 3 0 chrX 57350923 57351219 -105248711 + AluSq SINE Alu 1 297 -16 1592 132 48 15 chrX 57352648 57352921 -105247009 + AluJb SINE Alu 1 282 -30 342 0 0 0 chrX 57352924 57352962 -105246968 + (CA)n Simple_repeat Simple_repeat 2 39 0 1921 163 10 13 chrX 57353253 57353566 -105246364 - AluJo SINE Alu 0 312 1 495 246 11 2 chrX 57353644 57353761 -105246169 + MIR SINE MIR 32 147 -62 452 259 185 5 chrX 57353931 57354136 -105245794 - MIR SINE MIR 0 262 21 460 310 46 17 chrX 57354892 57355066 -105244864 - L3 LINE CR1 -211 1366 1188 196 312 45 17 chrX 57355066 57355245 -105244685 + MIR SINE MIR 1 250 -12 402 333 68 0 chrX 57356057 57356189 -105243741 - MIR3 SINE MIR -65 143 3 1949 150 34 0 chrX 57356520 57356813 -105243117 - AluJo SINE Alu -1 311 9 257 272 68 19 chrX 57357051 57357154 -105242776 - MIR SINE MIR -81 181 74 216 328 176 8 chrX 57357166 57357285 -105242645 + MIR SINE MIR 123 261 -1 180 342 148 7 chrX 57358067 57358216 -105241714 + MIR SINE MIR 50 219 -43 1979 135 0 16 chrX 57358791 57359094 -105240836 + AluSx SINE Alu 1 298 -14 289 304 42 115 chrX 57359247 57359281 -105240649 + MIR3 SINE MIR 3 38 -170 7904 168 69 26 chrX 57359281 57361287 -105238643 + L1PA13 LINE L1 3888 5936 -227 1459 151 0 0 chrX 57361287 57361512 -105238418 + AluSx SINE Alu 1 225 -87 7904 168 69 26 chrX 57361512 57361751 -105238179 + L1PA13 LINE L1 5936 6163 0 289 304 42 115 chrX 57361751 57361933 -105237997 + MIR3 SINE MIR 38 203 -5 541 306 140 0 chrX 57362294 57362480 -105237450 - MIR SINE MIR -48 214 3 248 221 205 56 chrX 57362548 57362797 -105237133 + L1ME4a LINE L1 5764 6049 -72 759 191 119 44 chrX 57363572 57363866 -105236064 - Charlie4a DNA MER1_type -7 501 186 2229 93 0 13 chrX 57363871 57364007 -105235923 + AluSq SINE Alu 1 137 -176 2080 110 3 7 chrX 57364007 57364315 -105235615 + AluSp SINE Alu 1 307 -6 2229 93 0 13 chrX 57364315 57364489 -105235441 + AluSq SINE Alu 137 307 -6 1181 101 0 0 chrX 57364489 57364647 -105235283 + AluSg/x SINE Alu 132 289 -21 476 167 14 176 chrX 57364736 57364946 -105234984 - Charlie4a DNA MER1_type -330 178 3 193 327 137 59 chrX 57364967 57365501 -105234429 - L2 LINE L2 0 3272 2695 2528 107 14 44 chrX 57366085 57366384 -105233546 + L1MA5A LINE L1 5535 5841 -456 2119 106 0 0 chrX 57366384 57366690 -105233240 + AluSx SINE Alu 1 306 0 2528 107 14 44 chrX 57366690 57366775 -105233155 + L1MA5A LINE L1 5841 5927 -370 2135 113 0 0 chrX 57366775 57367067 -105232863 + AluSx SINE Alu 2 293 -19 742 110 18 0 chrX 57367067 57367176 -105232754 + L1MA5A LINE L1 6172 6282 -15 2528 107 14 44 chrX 57367176 57367207 -105232723 + L1MA5A LINE L1 5925 6282 -15 678 176 15 30 chrX 57367216 57367347 -105232583 + FLAM_C SINE Alu 1 129 -4 36 23 0 0 chrX 57367352 57367395 -105232535 + AT_rich Low_complexity Low_complexity 1 43 0 265 221 3 0 chrX 57368492 57368546 -105231384 - MIR SINE MIR -62 146 100 519 333 0 43 chrX 57370132 57370296 -105229634 - MIR3 SINE MIR -7 201 46 2127 114 0 3 chrX 57370296 57370595 -105229335 + AluSx SINE Alu 1 298 -14 519 333 0 43 chrX 57370595 57370640 -105229290 - MIR3 SINE MIR -162 46 1 1650 147 16 45 chrX 57371495 57371809 -105228121 + AluJb SINE Alu 1 305 -7 304 234 75 32 chrX 57371970 57372064 -105227866 + MIR SINE MIR 103 200 -62 198 150 0 0 chrX 57372106 57372146 -105227784 + (TAAAAA)n Simple_repeat Simple_repeat 5 44 0 1961 125 0 0 chrX 57372673 57372983 -105226947 - AluSx SINE Alu 0 310 1 2171 92 0 23 chrX 57373054 57373359 -105226571 + AluSx SINE Alu 1 298 -14 272 236 86 64 chrX 57373708 57373848 -105226082 - MER5A DNA MER1_type -7 182 40 910 223 90 0 chrX 57374411 57374599 -105225331 - MER63A DNA MER1_type 0 210 6 236 250 0 0 chrX 57374626 57374682 -105225248 - MIR SINE MIR -109 153 98 186 212 0 0 chrX 57374680 57374713 -105225217 + MIR SINE MIR 67 99 -163 * 467 294 25 37 chrX 57375071 57375234 -105224696 + MIR SINE MIR 96 256 -6 253 274 133 44 chrX 57375413 57375526 -105224404 - MIR SINE MIR -65 143 21 2413 68 0 0 chrX 57375590 57375900 -105224030 - AluY SINE Alu -1 310 1 482 317 82 11 chrX 57376348 57376531 -105223399 + MIR3 SINE MIR 2 197 -11 243 0 0 0 chrX 57379115 57379142 -105220788 + (TG)n Simple_repeat Simple_repeat 1 27 0 218 248 97 110 chrX 57379319 57379464 -105220466 - L2 LINE L2 -212 3060 2918 2127 97 6 25 chrX 57379830 57380149 -105219781 - AluSq SINE Alu 0 313 1 378 42 0 0 chrX 57380257 57380305 -105219625 + (CA)n Simple_repeat Simple_repeat 1 48 0 2069 95 7 3 chrX 57380740 57381035 -105218895 + AluSx SINE Alu 2 297 -15 514 234 25 117 chrX 57381164 57381280 -105218650 - MIR SINE MIR -12 250 158 2343 70 0 16 chrX 57381280 57381596 -105218334 - AluY SINE Alu 0 311 1 514 234 25 117 chrX 57381596 57381676 -105218254 - MIR SINE MIR -104 158 72 1720 36 5 0 chrX 57381900 57382122 -105217808 + L1P LINE L1 2994 3216 -2930 1925 95 0 0 chrX 57382432 57382695 -105217235 + AluSq SINE Alu 45 307 -6 2155 115 0 3 chrX 57383562 57383875 -105216055 + AluSq SINE Alu 1 312 -1 201 333 0 0 chrX 57384104 57384161 -105215769 - L2 LINE L2 -16 3256 3200 322 242 11 33 chrX 57385175 57385266 -105214664 + MER5B DNA MER1_type 10 98 -80 205 341 87 16 chrX 57386140 57386266 -105213664 - MIR3 SINE MIR -9 199 65 298 323 20 10 chrX 57386887 57386986 -105212944 + MIR SINE MIR 54 153 -109 819 139 0 23 chrX 57386991 57387120 -105212810 + AluJb SINE Alu 2 127 -185 2162 78 7 11 chrX 57387984 57388303 -105211627 - AluSg SINE Alu 0 318 1 466 314 30 12 chrX 57388550 57388719 -105211211 - MIR SINE MIR -19 243 72 207 0 0 0 chrX 57389411 57389434 -105210496 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 473 120 0 140 chrX 57389436 57389487 -105210443 - HY4 scRNA scRNA 0 93 61 1659 178 34 0 chrX 57389487 57389779 -105210151 + AluSx SINE Alu 6 307 -5 473 120 0 140 chrX 57389779 57389827 -105210103 - HY4 scRNA scRNA -32 61 8 1663 166 3 3 chrX 57390339 57390622 -105209308 + AluJo SINE Alu 11 293 -19 2265 92 3 0 chrX 57390630 57390933 -105208997 + AluSq SINE Alu 1 304 -9 2173 115 0 3 chrX 57391126 57391439 -105208491 + AluSx SINE Alu 1 312 0 468 51 0 0 chrX 57391924 57391983 -105207947 + (TGG)n Simple_repeat Simple_repeat 2 60 0 481 234 62 55 chrX 57392622 57392750 -105207180 - L2 LINE L2 -4 3309 3181 213 323 83 21 chrX 57392746 57392842 -105207088 + MIR3 SINE MIR 6 107 -101 * 336 318 7 40 chrX 57393600 57393748 -105206182 - MIR SINE MIR -25 237 95 2016 118 0 7 chrX 57394317 57394627 -105205303 + AluSx SINE Alu 1 308 0 294 269 39 9 chrX 57394835 57394952 -105204978 + L1ME LINE L1 5698 5818 -303 315 240 219 0 chrX 57396506 57396602 -105203328 - MIR SINE MIR -55 153 37 2173 113 0 0 chrX 57397586 57397886 -105202044 - AluSx SINE Alu -6 306 7 2214 108 0 10 chrX 57398240 57398554 -105201376 + AluSx SINE Alu 1 311 -1 2307 85 0 0 chrX 57399430 57399725 -105200205 + AluSx SINE Alu 1 295 -17 985 219 70 8 chrX 57400306 57400548 -105199382 - MIR SINE MIR -3 259 3 347 339 23 9 chrX 57400991 57401103 -105198827 + MIR SINE MIR 1 117 -91 346 338 166 0 chrX 57401479 57401624 -105198306 + MIR3 SINE MIR 32 200 -8 1271 71 24 0 chrX 57401738 57401908 -105198022 + AluSp SINE Alu 125 298 -15 207 200 261 0 chrX 57402437 57402502 -105197428 + L2 LINE L2 3232 3313 0 263 270 54 63 chrX 57402562 57402673 -105197257 - MIR3 SINE MIR -15 193 84 230 245 0 20 chrX 57403342 57403391 -105196539 + MIR3 SINE MIR 145 192 -16 442 346 13 13 chrX 57404114 57404270 -105195660 + MIR3 SINE MIR 45 200 -8 477 0 0 0 chrX 57404412 57404465 -105195465 + (TA)n Simple_repeat Simple_repeat 1 53 0 2399 77 0 0 chrX 57404609 57404919 -105195011 - AluSg SINE Alu 0 310 1 361 256 72 133 chrX 57405415 57405595 -105194335 + MIR3 SINE MIR 34 202 -6 200 337 10 0 chrX 57407706 57407807 -105192123 + C-rich Low_complexity Low_complexity 4 105 0 * 216 182 34 45 chrX 57407748 57407836 -105192094 + (CCCCG)n Simple_repeat Simple_repeat 1 87 0 * 242 188 0 71 chrX 57407790 57407875 -105192055 + (CCCGG)n Simple_repeat Simple_repeat 1 79 0 764 292 103 4 chrX 57408002 57408283 -105191647 - L3 LINE CR1 -90 1487 1179 772 158 0 38 chrX 57408602 57408735 -105191195 + FLAM_C SINE Alu 2 129 -14 2021 90 29 0 chrX 57408743 57409022 -105190908 + AluSx SINE Alu 1 287 -25 1576 143 33 50 chrX 57409050 57409350 -105190580 + AluSx SINE Alu 7 301 -11 631 255 16 65 chrX 57409487 57409671 -105190259 + MIR3 SINE MIR 20 194 -14 2105 130 0 0 chrX 57410312 57410613 -105189317 + AluSx SINE Alu 1 301 -11 302 281 56 11 chrX 57410754 57410843 -105189087 - MIR3 SINE MIR -39 169 77 191 274 0 20 chrX 57410848 57410899 -105189031 - L2 LINE L2 -667 2647 2598 4835 156 23 55 chrX 57410909 57411278 -105188652 - L1PA16 LINE L1 -3 6163 5784 2364 75 0 7 chrX 57411278 57411585 -105188345 - AluY SINE Alu -6 305 1 4835 156 23 55 chrX 57411585 57412089 -105187841 - L1PA16 LINE L1 -382 5784 5266 2243 98 0 0 chrX 57412089 57412386 -105187544 - AluSq SINE Alu -16 297 1 4835 156 23 55 chrX 57412386 57413335 -105186595 - L1PA16 LINE L1 -900 5266 4387 1738 161 21 0 chrX 57413339 57413624 -105186306 - AluSx SINE Alu -21 291 1 3952 193 4 38 chrX 57413659 57414108 -105185822 + L1 LINE L1 3564 4027 -2119 2113 123 0 0 chrX 57414108 57414410 -105185520 + AluSx SINE Alu 11 312 0 3952 193 4 38 chrX 57414410 57414497 -105185433 + L1 LINE L1 4027 4115 -2031 2311 80 3 0 chrX 57414497 57414796 -105185134 + AluSg SINE Alu 1 300 -10 3952 193 4 38 chrX 57414796 57415103 -105184827 + L1 LINE L1 4115 4379 -1767 2035 124 3 10 chrX 57415909 57416215 -105183715 + AluSx SINE Alu 2 305 -7 2248 103 3 0 chrX 57416218 57416529 -105183401 + AluSx SINE Alu 1 312 0 349 310 94 44 chrX 57417312 57417515 -105182415 - MIR SINE MIR -22 240 28 186 219 0 0 chrX 57418019 57418060 -105181870 - L2 LINE L2 -23 3249 3209 197 336 42 7 chrX 57418241 57418384 -105181546 + L2 LINE L2 2551 2698 -616 356 40 20 0 chrX 57419046 57419096 -105180834 + (CA)n Simple_repeat Simple_repeat 2 52 0 466 207 119 21 chrX 57419148 57419290 -105180640 + L1M3 LINE L1 5670 5823 -326 2004 126 0 0 chrX 57419295 57419609 -105180321 + AluSq SINE Alu 1 314 0 421 335 113 10 chrX 57419690 57419893 -105180037 + L3 LINE CR1 1284 1507 -70 264 273 68 16 chrX 57419985 57420109 -105179821 - MIR SINE MIR -36 172 34 569 274 22 7 chrX 57420229 57420364 -105179566 - L2 LINE L2 0 3272 3136 378 331 52 13 chrX 57420745 57420899 -105179031 + MIR SINE MIR 18 177 -85 2162 72 6 50 chrX 57420943 57421261 -105178669 + AluY SINE Alu 1 304 -7 2080 100 0 7 chrX 57421286 57421577 -105178353 + AluSq SINE Alu 1 289 -24 291 286 124 9 chrX 57422495 57422600 -105177330 - MIR3 SINE MIR -1 207 91 666 122 0 0 chrX 57423302 57423392 -105176538 - AluS SINE Alu -221 91 2 1972 100 0 35 chrX 57423464 57423754 -105176176 + AluSq SINE Alu 1 280 -33 396 0 0 0 chrX 57423759 57423803 -105176127 + (TAA)n Simple_repeat Simple_repeat 2 45 0 207 275 47 74 chrX 57423812 57423961 -105175969 + L2 LINE L2 3045 3189 -124 409 177 0 0 chrX 57424017 57424096 -105175834 - Alu SINE Alu 0 312 234 935 123 0 0 chrX 57424096 57424226 -105175704 - AluSq/x SINE Alu -183 130 1 1676 176 105 46 chrX 57424227 57424665 -105175265 + MLT1D LTR MaLR 42 505 0 501 333 0 8 chrX 57424665 57424797 -105175133 + L2 LINE L2 3142 3272 0 1798 138 0 82 chrX 57424977 57425317 -105174613 + AluSx SINE Alu 1 312 0 189 295 33 0 chrX 57425413 57425474 -105174456 - L2 LINE L2 0 3272 3210 450 127 0 0 chrX 57425688 57425759 -105174171 + (CA)n Simple_repeat Simple_repeat 2 72 0 1916 111 3 46 chrX 57425775 57426082 -105173848 - AluSg SINE Alu -16 294 1 261 57 0 0 chrX 57426082 57426117 -105173813 + (TA)n Simple_repeat Simple_repeat 1 35 0 487 0 32 0 chrX 57426433 57426496 -105173434 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 1963 106 29 0 chrX 57426499 57426774 -105173156 - AluSg SINE Alu -27 283 1 2305 85 0 0 chrX 57426784 57427089 -105172841 - AluSx SINE Alu -2 310 6 243 204 0 0 chrX 57427089 57427133 -105172797 - AluJ/monomer SINE Alu -258 44 1 966 288 46 79 chrX 57427177 57427782 -105172148 + L2 LINE L2 2443 3030 -242 2221 97 0 3 chrX 57427854 57428152 -105171778 + AluSg SINE Alu 1 297 -13 297 382 30 65 chrX 57428342 57428386 -105171544 - L2 LINE L2 -481 2833 2789 2177 81 0 3 chrX 57428386 57428701 -105171229 - AluSp SINE Alu 0 314 1 297 382 30 65 chrX 57428701 57428917 -105171013 - L2 LINE L2 -525 2789 2581 734 184 44 25 chrX 57429257 57429415 -105170515 - MER46A DNA MER2_type -1 235 75 284 253 24 0 chrX 57429359 57429442 -105170488 + Tigger4(Zombi) DNA MER2_type 2646 2730 -1 * 242 259 153 0 chrX 57429544 57429629 -105170301 - L2 LINE L2 -928 2386 2289 187 333 0 0 chrX 57429768 57429828 -105170102 + L2 LINE L2 2976 3035 -237 306 277 136 63 chrX 57430440 57430775 -105169155 + L2 LINE L2 2730 3098 -174 730 283 0 11 chrX 57430892 57431072 -105168858 + MIR3 SINE MIR 22 199 -9 222 211 58 0 chrX 57431317 57431369 -105168561 - MIR SINE MIR -117 145 91 390 179 211 11 chrX 57431416 57431511 -105168419 + MER81 DNA DNA 1 114 0 683 233 5 85 chrX 57431692 57431881 -105168049 + MER5B DNA MER1_type 2 175 -3 287 282 25 98 chrX 57432590 57432753 -105167177 - L3 LINE CR1 -98 1479 1329 279 259 59 0 chrX 57432757 57432842 -105167088 - L3 LINE CR1 -376 1201 1112 342 0 0 0 chrX 57432976 57433014 -105166916 + (CA)n Simple_repeat Simple_repeat 2 39 0 591 289 118 58 chrX 57433020 57433203 -105166727 - L1MC4a LINE L1 -1896 5912 5741 2385 81 3 0 chrX 57433203 57433513 -105166417 - AluSp SINE Alu -2 311 1 591 289 118 58 chrX 57433513 57433762 -105166168 - L1MC4a LINE L1 -2067 5741 5454 315 0 0 0 chrX 57433764 57433799 -105166131 + (TA)n Simple_repeat Simple_repeat 1 35 0 2257 91 0 0 chrX 57433805 57434102 -105165828 - AluSx SINE Alu -15 297 1 1890 151 0 0 chrX 57434225 57434523 -105165407 - AluSx SINE Alu -14 298 1 2036 105 10 20 chrX 57434785 57435091 -105164839 - AluSq SINE Alu -10 303 1 250 313 122 9 chrX 57435203 57435318 -105164612 + MIR3 SINE MIR 45 172 -36 453 211 0 44 chrX 57435353 57435443 -105164487 + L2 LINE L2 3187 3272 0 202 290 29 103 chrX 57435835 57435905 -105164025 + MIR SINE MIR 40 97 -132 2266 99 0 3 chrX 57435905 57436209 -105163721 + AluSq SINE Alu 1 303 -10 202 290 29 103 chrX 57436209 57436276 -105163654 + MIR SINE MIR 97 167 -62 452 286 66 28 chrX 57436331 57436496 -105163434 - MIR SINE MIR -54 208 34 1952 138 10 3 chrX 57436496 57436801 -105163129 + AluSx SINE Alu 1 307 -5 452 286 66 28 chrX 57436801 57436817 -105163113 - MIR SINE MIR -228 34 20 506 346 108 27 chrX 57436830 57437125 -105162805 - L2 LINE L2 -28 3244 2926 742 263 102 33 chrX 57437253 57437527 -105162403 - L2 LINE L2 -5 3308 3016 866 127 0 8 chrX 57437527 57437661 -105162269 + FLAM_C SINE Alu 6 138 -5 530 228 52 57 chrX 57437663 57437856 -105162074 - L2 LINE L2 -296 3017 2826 2304 99 3 0 chrX 57437917 57438229 -105161701 - AluSp SINE Alu 0 313 1 2291 63 6 35 chrX 57438234 57438550 -105161380 - AluY SINE Alu -4 307 1 2185 100 0 31 chrX 57438575 57438895 -105161035 - AluSq SINE Alu -3 310 1 206 321 72 99 chrX 57439026 57439319 -105160611 - L2 LINE L2 -465 2849 2565 280 282 90 0 chrX 57439418 57439496 -105160434 + MIR3 SINE MIR 109 193 -15 302 299 43 55 chrX 57440083 57440337 -105159593 + L1M4c LINE L1 945 1195 -5189 2320 90 0 0 chrX 57440707 57441019 -105158911 - AluSx SINE Alu 0 312 1 238 325 61 57 chrX 57441345 57441542 -105158388 + MIR SINE MIR 2 187 -63 314 260 21 10 chrX 57441636 57441732 -105158198 - MIR SINE MIR -70 138 42 404 374 16 47 chrX 57442299 57442556 -105157374 + L2 LINE L2 2937 3185 -87 202 185 383 12 chrX 57442576 57442657 -105157273 - MIR SINE MIR 0 262 152 2555 194 10 62 chrX 57442670 57442892 -105157038 + L1MD1 LINE L1 5434 5666 -576 1885 177 87 11 chrX 57442892 57443259 -105156671 - MSTD LTR MaLR 0 396 2 2555 194 10 62 chrX 57443259 57443377 -105156553 + L1MD1 LINE L1 5666 5789 -453 1398 198 14 21 chrX 57443377 57443665 -105156265 + AluJo SINE Alu 5 290 -22 2555 194 10 62 chrX 57443665 57443956 -105155974 + L1MD1 LINE L1 5789 5977 -265 2125 113 7 0 chrX 57443956 57444257 -105155673 + AluSx SINE Alu 1 303 -9 2555 194 10 62 chrX 57444257 57444509 -105155421 + L1MD1 LINE L1 5977 6241 -1 1400 148 21 118 chrX 57444507 57444729 -105155201 + L1MB7 LINE L1 5821 6063 -121 * 1462 179 12 64 chrX 57444729 57445058 -105154872 - AluJo SINE Alu 0 312 1 1400 148 21 118 chrX 57445058 57445158 -105154772 + L1MB7 LINE L1 6063 6171 -13 1989 127 0 0 chrX 57445158 57445450 -105154480 - AluSx SINE Alu -17 295 4 1400 148 21 118 chrX 57445450 57445486 -105154444 + L1MB7 LINE L1 6171 6209 25 2749 87 0 0 chrX 57445486 57445841 -105154089 + THE1A LTR MaLR 1 355 0 11500 92 21 11 chrX 57445841 57446265 -105153665 + THE1A-int LTR MaLR 1 419 -1161 2097 108 0 17 chrX 57446265 57446562 -105153368 - AluSx SINE Alu -15 297 6 11500 92 21 11 chrX 57446562 57447702 -105152228 + THE1A-int LTR MaLR 419 1580 0 2539 93 29 0 chrX 57447702 57448047 -105151883 + THE1A LTR MaLR 1 355 0 512 299 91 67 chrX 57448153 57448558 -105151372 + L1MB2 LINE L1 9 423 -6119 1356 211 53 51 chrX 57448739 57449096 -105150834 + L1MB2 LINE L1 823 1183 -5359 2366 76 0 0 chrX 57449096 57449398 -105150532 + AluY SINE Alu 1 302 -9 1356 211 53 51 chrX 57449398 57449534 -105150396 + L1MB2 LINE L1 1183 1317 -5225 * 2916 224 54 28 chrX 57449522 57450427 -105149503 + L1MB2 LINE L1 2584 3510 -3134 500 171 19 0 chrX 57450431 57450536 -105149394 + CT-rich Low_complexity Low_complexity 4 110 0 948 122 14 0 chrX 57450536 57450683 -105149247 - AluSg/x SINE Alu 0 312 164 4878 224 21 131 chrX 57450685 57450972 -105148958 + L1MB2 LINE L1 3497 3814 -2830 1993 98 4 0 chrX 57450972 57451237 -105148693 + AluSp SINE Alu 1 266 -47 4878 224 21 131 chrX 57451237 57451521 -105148409 + L1MB2 LINE L1 3814 4128 -2516 2259 87 0 3 chrX 57451521 57451821 -105148109 - AluSq SINE Alu -14 299 1 4878 224 21 131 chrX 57451821 57452539 -105147391 + L1MB2 LINE L1 4128 4923 -1721 1965 138 20 0 chrX 57452539 57452843 -105147087 + AluSx SINE Alu 1 310 -2 4878 224 21 131 chrX 57452843 57452950 -105146980 + L1MB2 LINE L1 4923 5040 -1604 1941 142 0 16 chrX 57452950 57453266 -105146664 + AluSx SINE Alu 1 311 -1 4878 224 21 131 chrX 57453266 57454135 -105145795 + L1MB2 LINE L1 5040 5474 -1170 1895 116 35 0 chrX 57454135 57454420 -105145510 + AluY SINE Alu 1 295 -16 4878 224 21 131 chrX 57454420 57454629 -105145301 + L1MB2 LINE L1 5474 5704 -940 * 26765 36 15 1 chrX 57454614 57460646 -105139284 + L1PA2 LINE L1 1 6155 0 25 31 0 0 chrX 57460647 57460679 -105139251 + AT_rich Low_complexity Low_complexity 1 32 0 7172 94 15 0 chrX 57460679 57462464 -105137466 + L1PA7 LINE L1 4352 6152 -2 1778 149 42 0 chrX 57462506 57462794 -105137136 + AluSg SINE Alu 4 303 -7 4821 164 9 38 chrX 57462795 57462923 -105137007 + L1MB2 LINE L1 5679 5809 -860 1967 157 81 19 chrX 57462923 57463293 -105136637 - MSTD LTR MaLR -3 393 1 4821 164 9 38 chrX 57463293 57463889 -105136041 + L1MB2 LINE L1 5809 6372 -297 2127 114 16 0 chrX 57463889 57464195 -105135735 + AluSx SINE Alu 1 311 -1 4821 164 9 38 chrX 57464195 57464465 -105135465 + L1MB2 LINE L1 6372 6648 -21 328 135 58 0 chrX 57464466 57464518 -105135412 - AluJb SINE Alu -11 290 236 3781 169 16 4 chrX 57464561 57465267 -105134663 + L1MB4 LINE L1 5467 6180 0 233 230 380 10 chrX 57465340 57465440 -105134490 - L2 LINE L2 -19 3294 3158 2140 106 0 0 chrX 57465455 57465747 -105134183 - AluY SINE Alu -19 292 1 37 23 0 0 chrX 57466256 57466300 -105133630 + AT_rich Low_complexity Low_complexity 1 44 0 311 240 178 0 chrX 57466453 57466582 -105133348 - MIR SINE MIR -2 260 109 200 86 29 0 chrX 57466887 57466922 -105133008 + (CA)n Simple_repeat Simple_repeat 1 36 0 470 200 45 55 chrX 57467414 57467524 -105132406 - AluJb SINE Alu -81 231 123 538 294 156 0 chrX 57468080 57468298 -105131632 + MIR SINE MIR 5 256 -6 491 205 94 17 chrX 57468394 57468511 -105131419 + L2 LINE L2 3188 3313 0 293 235 82 12 chrX 57468526 57468611 -105131319 - L2 LINE L2 -33 3280 3190 1793 169 7 0 chrX 57468630 57468920 -105131010 + AluSx SINE Alu 3 294 -18 2290 88 3 0 chrX 57468922 57469230 -105130700 + AluSg1 SINE Alu 1 309 0 952 157 0 0 chrX 57469246 57469393 -105130537 + AluJb SINE Alu 141 287 -25 1464 311 41 10 chrX 57469546 57470156 -105129774 - L2 LINE L2 -330 2983 2347 1513 266 22 5 chrX 57470334 57470744 -105129186 - L2 LINE L2 -547 2767 2351 482 288 21 47 chrX 57470881 57471117 -105128813 + L2 LINE L2 2159 2388 -926 926 193 105 48 chrX 57471132 57471360 -105128570 + MIR SINE MIR 5 245 -17 222 211 0 0 chrX 57471377 57471415 -105128515 + (ATG)n Simple_repeat Simple_repeat 2 39 0 528 182 0 50 chrX 57471691 57471812 -105128118 - MER3 DNA MER1_type -5 204 90 715 229 16 83 chrX 57471818 57472010 -105127920 + MIR SINE MIR 34 212 -50 1992 132 0 10 chrX 57472031 57472334 -105127596 - AluSq SINE Alu -10 303 4 286 209 181 67 chrX 57472335 57472440 -105127490 + MIR3 SINE MIR 67 183 -25 554 280 73 69 chrX 57472526 57472787 -105127143 - MIR SINE MIR 0 262 1 287 314 38 19 chrX 57472917 57473022 -105126908 - L2 LINE L2 -653 2661 2555 220 319 133 26 chrX 57473208 57473321 -105126609 - L2 LINE L2 -793 2521 2397 396 250 83 15 chrX 57474037 57474169 -105125761 - MIR3 SINE MIR -3 205 65 233 357 112 0 chrX 57474244 57474342 -105125588 + MIR SINE MIR 31 139 -69 2084 105 0 3 chrX 57475710 57475996 -105123934 - AluSc SINE Alu -24 285 1 1798 136 3 30 chrX 57476042 57476344 -105123586 - AluSq SINE Alu -19 294 1 205 262 0 16 chrX 57476369 57476430 -105123500 + L2 LINE L2 3001 3060 -212 308 253 35 23 chrX 57476687 57476774 -105123156 + MIR SINE MIR 45 132 -76 307 275 20 7 chrX 57476891 57477193 -105122737 + CT-rich Low_complexity Low_complexity 1 306 0 449 297 34 0 chrX 57477534 57477652 -105122278 - MIR SINE MIR -64 144 23 1732 177 0 3 chrX 57477701 57478000 -105121930 + AluJo SINE Alu 1 298 -14 1211 189 45 51 chrX 57478000 57478313 -105121617 + AluJb SINE Alu 1 311 -1 197 333 104 10 chrX 57478396 57478492 -105121438 + L2 LINE L2 3150 3254 -18 188 332 62 15 chrX 57478574 57478704 -105121226 + MIR SINE MIR 33 167 -58 186 103 0 0 chrX 57478731 57478760 -105121170 + (A)n Simple_repeat Simple_repeat 1 29 0 251 360 79 0 chrX 57479170 57479259 -105120671 + MIR SINE MIR 45 140 -68 580 233 65 0 chrX 57479293 57479438 -105120492 + MIR3 SINE MIR 7 161 -47 505 302 22 28 chrX 57479463 57479642 -105120288 + MIR3 SINE MIR 30 207 -1 494 285 21 21 chrX 57480615 57480759 -105119171 + MIR3 SINE MIR 52 195 -13 405 277 0 18 chrX 57481073 57481185 -105118745 + MIR3 SINE MIR 60 169 -39 2227 100 0 0 chrX 57481507 57481808 -105118122 + AluSx SINE Alu 2 302 -10 2084 109 0 0 chrX 57482305 57482590 -105117340 - AluSx SINE Alu -27 285 1 2159 100 10 0 chrX 57482855 57483156 -105116774 + AluSg SINE Alu 1 304 -6 1547 116 42 4 chrX 57485253 57485494 -105114436 + AluSq SINE Alu 62 311 -2 180 0 0 0 chrX 57486131 57486151 -105113779 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 201 147 0 0 chrX 57486370 57486404 -105113526 + (CAG)n Simple_repeat Simple_repeat 1 34 0 209 33 33 0 chrX 57486502 57486532 -105113398 + (GA)n Simple_repeat Simple_repeat 1 31 0 1812 129 4 0 chrX 57488795 57489067 -105110863 + AluSx SINE Alu 21 293 -19 1599 102 0 9 chrX 57489070 57489295 -105110635 + AluSx SINE Alu 1 223 -89 228 103 0 0 chrX 57489297 57489336 -105110594 + AluSx SINE Alu 262 300 -2 5578 98 23 63 chrX 57489367 57489578 -105110352 + L1PA15 LINE L1 5121 5339 -826 213 65 0 0 chrX 57489578 57489609 -105110321 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2075 93 7 13 chrX 57489611 57489911 -105110019 - AluSq SINE Alu -15 298 1 5578 98 23 63 chrX 57489911 57490153 -105109777 + L1PA15 LINE L1 5340 5590 -575 1806 152 13 19 chrX 57490153 57490462 -105109468 + AluJo SINE Alu 1 307 -5 5578 98 23 63 chrX 57490462 57490673 -105109257 + L1PA15 LINE L1 5590 5808 -357 1836 146 3 0 chrX 57490673 57490986 -105108944 + AluJb SINE Alu 1 312 0 5578 98 23 63 chrX 57490986 57491036 -105108894 + L1PA15 LINE L1 5808 5858 -307 1775 157 0 0 chrX 57491036 57491323 -105108607 + AluSx SINE Alu 9 295 -17 5578 98 23 63 chrX 57491323 57491667 -105108263 + L1PA15 LINE L1 5858 6155 -10 1561 127 120 8 chrX 57491669 57491928 -105108002 + AluSg1 SINE Alu 1 288 -21 23 33 0 0 chrX 57491928 57491958 -105107972 + AT_rich Low_complexity Low_complexity 1 30 0 222 314 58 23 chrX 57492681 57492767 -105107163 + L2 LINE L2 3184 3272 0 398 327 13 19 chrX 57492983 57493139 -105106791 - MIR3 SINE MIR -3 205 51 252 100 0 0 chrX 57494859 57494899 -105105031 + (TC)n Simple_repeat Simple_repeat 2 41 0 732 135 54 0 chrX 57494901 57495012 -105104918 - FLAM_C SINE Alu -15 118 2 293 167 0 0 chrX 57495016 57495064 -105104866 - MIR SINE MIR -113 149 102 2082 134 0 0 chrX 57495789 57496095 -105103835 + AluSx SINE Alu 3 308 -4 247 246 15 15 chrX 57496677 57496742 -105103188 + CT-rich Low_complexity Low_complexity 1 65 0 249 179 0 119 chrX 57497027 57497111 -105102819 + GA-rich Low_complexity Low_complexity 3 76 0 210 37 0 0 chrX 57497318 57497345 -105102585 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1842 136 0 14 chrX 57497348 57497634 -105102296 - AluSx SINE Alu -30 282 1 2060 84 52 42 chrX 57498462 57498771 -105101159 + AluSx SINE Alu 1 312 0 243 255 120 53 chrX 57499164 57499312 -105100618 - MIR SINE MIR -65 143 30 2238 159 87 3 chrX 57500040 57500429 -105099501 + MSTB LTR MaLR 1 422 -4 401 200 20 20 chrX 57501642 57501742 -105098188 - L1MC5 LINE L1 -36 7925 7826 200 324 141 42 chrX 57501849 57501991 -105097939 - L2 LINE L2 -8 3264 3109 955 131 71 24 chrX 57502077 57502245 -105097685 - AluSg/x SINE Alu 0 310 135 898 192 66 0 chrX 57502245 57502412 -105097518 + MER58A DNA MER1_type 47 224 0 604 185 51 96 chrX 57502857 57503035 -105096895 - MIR3 SINE MIR -1 207 38 427 308 34 10 chrX 57503050 57503198 -105096732 - MIR3 SINE MIR -51 157 20 248 288 62 0 chrX 57503993 57504073 -105095857 - MIR3 SINE MIR -45 163 79 299 336 74 13 chrX 57505385 57505534 -105094396 + MIR SINE MIR 10 167 -95 12982 106 8 21 chrX 57505570 57507486 -105092444 + L1PA7 LINE L1 8 1863 -4598 3736 113 0 4 chrX 57507486 57507999 -105091931 + MER9 LTR ERVK 1 511 0 12982 106 8 21 chrX 57507999 57509694 -105090236 + L1PA7 LINE L1 1863 3580 -2881 12921 85 0 21 chrX 57509694 57511505 -105088425 + L1PA7 LINE L1 3878 5651 -818 2092 117 0 7 chrX 57511505 57511820 -105088110 - AluSg SINE Alu 0 314 2 12921 85 0 21 chrX 57511820 57512623 -105087307 + L1PA7 LINE L1 5651 6469 0 2139 112 3 7 chrX 57512650 57512964 -105086966 + AluSx SINE Alu 1 313 0 2264 89 4 0 chrX 57513247 57513566 -105086364 - AluSp SINE Alu 0 321 2 658 202 37 0 chrX 57513589 57513698 -105086232 - FLAM_C SINE Alu -25 118 6 180 365 7 68 chrX 57513719 57513867 -105086063 - L3b LINE CR1 -195 1388 1250 2115 120 0 0 chrX 57514035 57514367 -105085563 - AluSq SINE Alu 0 334 3 2230 109 3 7 chrX 57514384 57514678 -105085252 - AluSq SINE Alu -18 295 3 234 0 0 0 chrX 57514764 57514794 -105085136 + L1MA4A LINE L1 6100 6129 -174 1964 155 0 34 chrX 57515060 57515383 -105084547 - AluJo SINE Alu 0 312 1 450 0 0 0 chrX 57515491 57515541 -105084389 + (TA)n Simple_repeat Simple_repeat 2 51 0 2267 108 0 0 chrX 57515572 57515867 -105084063 + AluSx SINE Alu 1 295 -17 453 320 88 29 chrX 57516033 57516339 -105083591 + L1MC4a LINE L1 4987 5310 -836 1129 260 79 59 chrX 57516344 57516607 -105083323 + L1MC4a LINE L1 5318 5574 -2234 2172 120 0 10 chrX 57516607 57516906 -105083024 + AluSx SINE Alu 2 297 -15 1129 260 79 59 chrX 57516906 57517249 -105082681 + L1MC4a LINE L1 5574 5936 -1872 24 53 0 0 chrX 57517381 57517419 -105082511 + AT_rich Low_complexity Low_complexity 1 38 0 2173 107 14 0 chrX 57517642 57517933 -105081997 + AluSg SINE Alu 1 295 -15 4953 167 20 16 chrX 57518108 57518769 -105081161 + L1P LINE L1 2059 2727 -3419 2388 98 0 0 chrX 57518769 57519066 -105080864 + AluSq SINE Alu 1 297 -16 4953 167 20 16 chrX 57519066 57519426 -105080504 + L1P LINE L1 2727 3084 -3062 453 250 119 28 chrX 57519598 57519785 -105080145 - MIR3 SINE MIR 0 208 2 2106 103 11 0 chrX 57520299 57520572 -105079358 + AluSq SINE Alu 34 309 -4 2433 101 31 14 chrX 57521067 57521143 -105078787 + THE1B LTR MaLR 1 74 -290 4986 42 0 3 chrX 57521143 57521736 -105078194 - LTR10C LTR ERV1 0 591 1 2433 101 31 14 chrX 57521736 57522017 -105077913 + THE1B LTR MaLR 74 364 0 768 115 9 0 chrX 57522585 57522698 -105077232 + MLT1B LTR MaLR 8 121 -269 2256 79 4 14 chrX 57522704 57522984 -105076946 + AluSg SINE Alu 1 277 -33 2299 93 30 0 chrX 57526074 57526375 -105073555 - AluSg SINE Alu 0 310 1 1334 149 0 118 chrX 57526628 57526693 -105073237 + MLT1B LTR MaLR 113 184 -206 2501 77 0 3 chrX 57526693 57527005 -105072925 + AluY SINE Alu 1 311 0 2423 81 7 3 chrX 57527014 57527312 -105072618 + AluSc SINE Alu 1 299 -10 1334 149 0 118 chrX 57527312 57527551 -105072379 + MLT1B LTR MaLR 192 390 0 185 292 0 0 chrX 57527738 57527786 -105072144 + MIR SINE MIR 204 251 -11 1839 161 10 16 chrX 57528351 57528655 -105071275 + AluJo SINE Alu 1 302 -10 897 201 98 130 chrX 57528656 57529034 -105070896 + MLT1A1 LTR MaLR 30 364 -1 192 278 21 52 chrX 57529102 57529199 -105070731 - MIR SINE MIR -104 158 65 252 303 79 0 chrX 57529228 57529304 -105070626 + L2 LINE L2 3168 3249 -23 308 312 110 23 chrX 57530340 57530558 -105069372 - MIR SINE MIR -15 247 11 287 363 0 0 chrX 57530635 57530759 -105069171 + CT-rich Low_complexity Low_complexity 4 127 0 435 280 85 0 chrX 57530924 57531062 -105068868 + MIR SINE MIR 3 143 -65 2132 109 0 35 chrX 57531096 57531407 -105068523 + AluSq SINE Alu 1 300 -13 1251 134 0 0 chrX 57531407 57531579 -105068351 + AluSg/x SINE Alu 132 303 -7 713 186 8 0 chrX 57531733 57531851 -105068079 + FLAM_C SINE Alu 2 120 -23 1845 121 3 83 chrX 57531851 57532116 -105067814 + LTR8 LTR ERV1 6 241 -450 2010 118 7 4 chrX 57532116 57532472 -105067458 + AluSx SINE Alu 1 357 0 1845 121 3 83 chrX 57532472 57532543 -105067387 + LTR8 LTR ERV1 241 316 -375 1905 107 3 27 chrX 57532569 57532923 -105067007 - MER4A LTR ERV1 0 664 261 845 200 5 38 chrX 57532942 57533049 -105066881 + FRAM SINE Alu 1 110 -202 3643 140 36 68 chrX 57533049 57533397 -105066533 - LTR8A LTR ERV1 0 727 369 1762 174 3 3 chrX 57533397 57533741 -105066189 + AluJb SINE Alu 1 344 0 3643 140 36 68 chrX 57533741 57534141 -105065789 - LTR8A LTR ERV1 -358 369 1 845 200 5 38 chrX 57534141 57534206 -105065724 + FRAM SINE Alu 110 176 -136 1342 182 36 91 chrX 57534206 57534536 -105065394 + AluJo SINE Alu 1 312 0 2291 112 0 0 chrX 57534540 57534836 -105065094 - AluSx SINE Alu -16 296 1 295 318 45 9 chrX 57534949 57535059 -105064871 - L2 LINE L2 -658 2656 2543 4265 56 0 67 chrX 57535258 57535380 -105064550 - MER41A LTR ERV1 0 554 425 2404 91 3 3 chrX 57535380 57535689 -105064241 + AluSc SINE Alu 1 309 0 4265 56 0 67 chrX 57535689 57535785 -105064145 - MER41A LTR ERV1 -129 425 324 2114 134 10 0 chrX 57535785 57535962 -105063968 - AluSx SINE Alu -2 310 127 239 54 27 0 chrX 57535962 57535999 -105063931 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2114 134 10 0 chrX 57535999 57536128 -105063802 - AluSx SINE Alu -185 127 1 4265 56 0 67 chrX 57536128 57536502 -105063428 - MER41A LTR ERV1 -230 324 1 2245 101 20 0 chrX 57536524 57536821 -105063109 + AluSx SINE Alu 1 303 -9 492 18 0 0 chrX 57536821 57536878 -105063052 + (TA)n Simple_repeat Simple_repeat 1 57 0 563 216 16 172 chrX 57536890 57536952 -105062978 - MIR SINE MIR -19 243 173 1536 107 27 163 chrX 57536952 57537290 -105062640 - AluSg1 SINE Alu -17 292 1 563 216 16 172 chrX 57537290 57537477 -105062453 - MIR SINE MIR -89 173 33 321 319 137 0 chrX 57537508 57537690 -105062240 - L2 LINE L2 -894 2420 2214 1621 232 47 55 chrX 57537967 57538476 -105061454 + MLT1D LTR MaLR 1 505 0 2329 112 0 3 chrX 57538921 57539234 -105060696 + AluSx SINE Alu 1 312 0 357 239 231 8 chrX 57539614 57539731 -105060199 - MIR3 SINE MIR -28 180 38 2118 116 0 0 chrX 57539733 57540059 -105059871 - AluSx SINE Alu 0 326 1 262 231 0 0 chrX 57543053 57543105 -105056825 - L2 LINE L2 -83 3189 3138 1889 126 94 7 chrX 57543397 57543683 -105056247 - AluSx SINE Alu -1 311 1 296 261 163 46 chrX 57543728 57543881 -105056049 + MIR3 SINE MIR 37 207 -1 910 162 137 25 chrX 57544092 57544296 -105055634 + MER96B DNA MER1_type? 1 227 -190 1832 157 14 7 chrX 57544341 57544516 -105055414 - AluSx SINE Alu 0 308 129 2339 98 0 23 chrX 57544516 57544822 -105055108 - AluSg SINE Alu -11 299 1 1832 157 14 7 chrX 57544822 57544952 -105054978 - AluSx SINE Alu -179 129 1 232 304 98 22 chrX 57545093 57545185 -105054745 - MIR3 SINE MIR -39 169 71 229 189 0 0 chrX 57545906 57545943 -105053987 + tRNA-Val-GTG tRNA tRNA 1 37 -39 530 319 0 7 chrX 57546498 57546636 -105053294 - MIR3 SINE MIR -29 179 43 200 188 0 0 chrX 57546759 57546791 -105053139 + polypurine Low_complexity Low_complexity 1 32 0 2187 141 0 0 chrX 57547486 57547798 -105052132 - AluSx SINE Alu 0 312 1 1764 202 0 3 chrX 57547798 57548095 -105051835 - AluJb SINE Alu -16 296 1 2414 93 6 3 chrX 57548108 57548419 -105051511 - AluSx SINE Alu 0 312 1 2234 166 63 12 chrX 57549066 57549477 -105050453 - MSTB1 LTR MaLR 0 432 1 883 97 0 41 chrX 57549549 57549694 -105050236 + MER85 DNA T2_type 1 139 0 219 114 0 0 chrX 57550580 57550615 -105049315 + (GGGTG)n Simple_repeat Simple_repeat 3 37 0 770 227 7 0 chrX 57550673 57550823 -105049107 - MIR3 SINE MIR -14 194 44 315 250 0 0 chrX 57550973 57551049 -105048881 + CT-rich Low_complexity Low_complexity 1 76 0 366 227 33 107 chrX 57551854 57552004 -105047926 - MIR3 SINE MIR -14 194 56 306 291 12 0 chrX 57552004 57552090 -105047840 + MIR SINE MIR 176 262 0 230 211 44 89 chrX 57552045 57552135 -105047795 - MIR SINE MIR -103 105 20 * 1026 302 187 32 chrX 57552361 57553599 -105046331 + L2 LINE L2 564 1993 -1321 429 295 48 48 chrX 57553628 57553838 -105046092 + L2 LINE L2 2217 2426 -888 252 244 134 50 chrX 57553910 57554029 -105045901 + L2 LINE L2 3136 3264 -8 200 267 22 0 chrX 57554486 57554531 -105045399 + L3b LINE CR1 1522 1567 -16 310 214 190 38 chrX 57554694 57554841 -105045089 - MIR3 SINE MIR -48 160 1 463 302 24 52 chrX 57554915 57555127 -105044803 - MIR SINE MIR -28 234 29 191 219 0 0 chrX 57555631 57555672 -105044258 - L2 LINE L2 -23 3249 3209 270 320 46 7 chrX 57555853 57556006 -105043924 + L2 LINE L2 2551 2709 -605 687 257 0 7 chrX 57556550 57556702 -105043228 - MIR SINE MIR -2 260 110 180 243 0 0 chrX 57557172 57557246 -105042684 + GA-rich Low_complexity Low_complexity 2 75 0 2689 48 0 13 chrX 57557798 57558113 -105041817 + AluY SINE Alu 1 311 0 387 0 0 0 chrX 57558669 57558712 -105041218 + (TG)n Simple_repeat Simple_repeat 2 44 0 297 0 0 0 chrX 57560781 57560814 -105039116 + (TG)n Simple_repeat Simple_repeat 1 33 0 346 271 10 21 chrX 57560903 57560999 -105038931 - MIR3 SINE MIR -43 165 71 509 203 0 91 chrX 57561680 57561823 -105038107 + MIR3 SINE MIR 54 183 -25 180 152 0 0 chrX 57562473 57562506 -105037424 + (CAG)n Simple_repeat Simple_repeat 3 35 0 226 208 0 0 chrX 57563826 57563874 -105036056 - MIR3 SINE MIR -10 198 151 2345 79 20 7 chrX 57564038 57564343 -105035587 - AluSx SINE Alu -3 309 1 21 36 0 0 chrX 57564363 57564391 -105035539 + AT_rich Low_complexity Low_complexity 1 28 0 203 286 0 92 chrX 57564408 57564506 -105035424 - MIR3 SINE MIR -49 159 71 735 224 39 6 chrX 57564527 57564683 -105035247 + MER5A DNA MER1_type 29 189 0 251 272 204 20 chrX 57564701 57564848 -105035082 + MIR SINE MIR 38 211 -51 1799 174 7 0 chrX 57565232 57565536 -105034394 - AluJo SINE Alu -6 306 1 450 216 24 34 chrX 57566540 57566680 -105033250 + MIR SINE MIR 15 152 -56 2258 108 7 0 chrX 57567117 57567423 -105032507 - AluSx SINE Alu -4 308 1 222 37 0 0 chrX 57568378 57568405 -105031525 + (GA)n Simple_repeat Simple_repeat 2 28 0 201 220 0 34 chrX 57568616 57568675 -105031255 + A-rich Low_complexity Low_complexity 3 59 0 2309 116 0 0 chrX 57571432 57571742 -105028188 + AluSx SINE Alu 1 310 -2 557 294 24 43 chrX 57571837 57572048 -105027882 + MIR SINE MIR 4 210 -52 1979 133 3 32 chrX 57573794 57574109 -105025821 + AluJb SINE Alu 1 306 -6 697 249 20 30 chrX 57574199 57574400 -105025530 + MIR SINE MIR 8 206 -56 23 0 0 0 chrX 57574582 57574605 -105025325 + AT_rich Low_complexity Low_complexity 1 23 0 2151 112 0 3 chrX 57574620 57574930 -105025000 + AluSx SINE Alu 1 309 0 216 391 11 0 chrX 57575526 57575613 -105024317 + L2 LINE L2 2583 2670 -644 328 346 122 54 chrX 57575690 57576060 -105023870 + L2 LINE L2 2869 3263 -9 387 352 16 8 chrX 57576466 57576594 -105023336 + MIR3 SINE MIR 42 170 -38 838 199 55 116 chrX 57577064 57577144 -105022786 + ORSL DNA AcHobo 2 85 -190 1908 162 0 3 chrX 57577144 57577440 -105022490 + AluJb SINE Alu 1 295 -17 838 199 55 116 chrX 57577440 57577651 -105022279 + ORSL DNA AcHobo 85 275 0 237 65 0 0 chrX 57578328 57578359 -105021571 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2211 121 23 0 chrX 57578370 57578675 -105021255 - AluSx SINE Alu 0 312 1 243 261 164 17 chrX 57579064 57579302 -105020628 + L1ME4a LINE L1 5776 6048 -73 881 148 0 15 chrX 57579342 57579477 -105020453 + FLAM_C SINE Alu 1 133 0 2163 109 0 0 chrX 57580518 57580848 -105019082 - AluSg SINE Alu 0 330 1 1299 155 42 0 chrX 57580895 57581088 -105018842 + AluJo SINE Alu 86 286 -26 433 248 0 0 chrX 57581103 57581232 -105018698 - L1ME4a LINE L1 -11 6110 5982 1932 101 91 4 chrX 57581948 57582224 -105017706 - AluSx SINE Alu -12 300 1 1918 153 0 7 chrX 57582229 57582529 -105017401 - AluJb SINE Alu -14 298 1 312 83 0 0 chrX 57583175 57583223 -105016707 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 198 0 0 0 chrX 57583612 57583634 -105016296 + (TA)n Simple_repeat Simple_repeat 2 23 0 1868 169 0 0 chrX 57583634 57583924 -105016006 - AluJb SINE Alu -22 290 1 419 261 159 15 chrX 57583984 57584179 -105015751 + MIR SINE MIR 34 256 -6 481 273 192 7 chrX 57584194 57584345 -105015585 + MIR SINE MIR 32 209 -53 268 315 0 0 chrX 57584604 57584677 -105015253 + L3 LINE CR1 1435 1507 -70 2036 186 54 96 chrX 57584756 57585277 -105014653 - MLT1D LTR MaLR -6 499 1 2566 66 0 0 chrX 57587178 57587482 -105012448 + AluY SINE Alu 1 304 -7 2335 99 3 6 chrX 57587778 57588090 -105011840 - AluSx SINE Alu -1 311 1 197 286 86 0 chrX 57588933 57589003 -105010927 - L2 LINE L2 -39 3233 3158 504 246 8 37 chrX 57589055 57589189 -105010741 + MER94 DNA DNA 2 131 -3 362 244 122 71 chrX 57589328 57589582 -105010348 - L2 LINE L2 -1 3312 3046 1832 140 3 11 chrX 57589793 57590079 -105009851 + AluJb SINE Alu 1 284 -28 1772 52 0 0 chrX 57590977 57591187 -105008743 - L1PA13 LINE L1 -1 6162 5953 2883 56 14 0 chrX 57591187 57591544 -105008386 + L1PA13 LINE L1 5591 5952 -216 23 0 0 0 chrX 57591965 57591988 -105007942 + AT_rich Low_complexity Low_complexity 1 23 0 201 135 58 0 chrX 57593011 57593063 -105006867 + CT-rich Low_complexity Low_complexity 2 56 0 389 310 99 64 chrX 57593918 57594231 -105005699 - L2 LINE L2 -33 3239 2916 242 255 57 142 chrX 57594326 57594467 -105005463 + L2 LINE L2 3136 3264 -8 2292 94 3 0 chrX 57594487 57594784 -105005146 - AluSq SINE Alu -15 298 1 5490 210 51 72 chrX 57595168 57595277 -105004653 + L1M4 LINE L1 1 111 -6431 2873 76 50 0 chrX 57595277 57595634 -105004296 + MER51B LTR ERV1 3 377 0 5490 210 51 72 chrX 57595634 57595681 -105004249 + L1M4 LINE L1 111 157 -6385 2250 117 0 0 chrX 57595681 57595981 -105003949 + AluSq SINE Alu 1 300 -13 5490 210 51 72 chrX 57595981 57597011 -105002919 + L1M4 LINE L1 157 1151 -5391 665 234 0 16 chrX 57597011 57597135 -105002795 + FLAM_A SINE Alu 1 122 -11 5490 210 51 72 chrX 57597135 57597490 -105002440 + L1M4 LINE L1 1151 1512 -5030 369 0 0 0 chrX 57597490 57597531 -105002399 + (CA)n Simple_repeat Simple_repeat 2 42 0 458 206 7 68 chrX 57597534 57597573 -105002357 - L1M4 LINE L1 -4866 1676 1636 1903 81 143 12 chrX 57597573 57597832 -105002098 - AluSx SINE Alu -9 293 1 458 206 7 68 chrX 57597832 57597938 -105001992 - L1M4 LINE L1 -4906 1636 1540 234 91 0 0 chrX 57597951 57597984 -105001946 + (TG)n Simple_repeat Simple_repeat 2 34 0 577 244 58 29 chrX 57597988 57598193 -105001737 + MER41E-int LTR ERV1 6391 6601 -75 1812 131 28 41 chrX 57598225 57598516 -105001414 + AluSx SINE Alu 11 297 -15 2792 102 11 5 chrX 57598543 57598925 -105001005 + MER41E LTR ERV1 15 398 -114 2486 235 67 95 chrX 57598939 57599397 -105000533 + L1MA9 LINE L1 1097 1566 -4762 2668 93 34 6 chrX 57599397 57599750 -105000180 + THE1B LTR MaLR 2 364 0 2486 235 67 95 chrX 57599750 57600442 -104999488 + L1MA9 LINE L1 1566 2276 -4052 2054 137 14 0 chrX 57600442 57600734 -104999196 + AluSx SINE Alu 1 296 -16 2486 235 67 95 chrX 57600734 57601556 -104998374 + L1MA9 LINE L1 2276 3008 -3320 767 168 0 0 chrX 57601591 57601722 -104998208 + L1MA9 LINE L1 4259 4389 -1939 3231 151 17 187 chrX 57601722 57602034 -104997896 + L1MA9 LINE L1 4618 4981 -1347 2307 102 0 7 chrX 57602034 57602328 -104997602 + AluSq SINE Alu 2 293 -20 240 104 0 0 chrX 57602329 57602377 -104997553 - LTR66 LTR ERVL -169 441 394 3231 151 17 187 chrX 57602377 57602917 -104997013 + L1MA9 LINE L1 4981 5293 -1035 263 26 51 0 chrX 57602917 57602956 -104996974 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 3231 151 17 187 chrX 57602956 57603175 -104996755 + L1MA9 LINE L1 5293 5548 -780 3425 227 40 20 chrX 57603175 57603598 -104996332 + L1PB3 LINE L1 1788 2201 -3945 2184 141 0 0 chrX 57603598 57603903 -104996027 + AluSx SINE Alu 1 305 -7 3425 227 40 20 chrX 57603903 57604591 -104995339 + L1PB3 LINE L1 2201 2920 -3226 2346 100 7 0 chrX 57605350 57605660 -104994270 - AluSx SINE Alu 0 312 1 5841 147 11 21 chrX 57606496 57606604 -104993326 + L1PB3 LINE L1 4549 4657 -1497 1881 63 44 56 chrX 57606604 57606874 -104993056 + AluY SINE Alu 42 308 -3 5841 147 11 21 chrX 57606874 57608383 -104991547 + L1PB3 LINE L1 4657 6145 -9 546 99 0 0 chrX 57608383 57608474 -104991456 + (TA)n Simple_repeat Simple_repeat 2 92 0 2549 186 18 75 chrX 57608477 57609535 -104990395 + L1MA9 LINE L1 5533 6494 0 3925 241 41 16 chrX 57609539 57611076 -104988854 + L1M4c LINE L1 2163 3736 -2646 261 302 0 12 chrX 57611120 57611206 -104988724 + L1M3c LINE L1 148 232 -5909 289 327 19 37 chrX 57611455 57611617 -104988313 + L1M3c LINE L1 477 635 -5496 801 233 164 9 chrX 57611645 57611877 -104988053 + MLT1C LTR MaLR 192 459 -8 751 199 0 0 chrX 57611925 57612071 -104987859 + L1M4c LINE L1 4711 4856 -1526 4774 104 0 0 chrX 57612075 57612699 -104987231 - L1PA16 LINE L1 -17 6149 5526 1846 120 40 4 chrX 57612817 57613120 -104986810 - AluSx SINE Alu 0 313 1 425 113 0 12 chrX 57613334 57613439 -104986491 - L1PB1 LINE L1 0 6151 6071 43250 54 5 8 chrX 57613476 57617266 -104982664 - L1PA4 LINE L1 -1 6154 2353 9960 31 0 176 chrX 57617266 57618889 -104981041 - SVA Other Other 0 1386 50 43250 54 5 8 chrX 57618889 57618900 -104981030 - L1PA4 LINE L1 -3802 2353 2343 612 0 0 0 chrX 57618900 57618968 -104980962 + (GGGAGA)n Simple_repeat Simple_repeat 6 73 0 43250 54 5 8 chrX 57618968 57621343 -104978587 - L1PA4 LINE L1 -3812 2343 3 2842 94 97 18 chrX 57621343 57621598 -104978332 - L1PB1 LINE L1 -70 6081 5847 1771 173 0 26 chrX 57621598 57621910 -104978020 - AluSx SINE Alu -8 304 1 2842 94 97 18 chrX 57621910 57621944 -104977986 - L1PB1 LINE L1 -304 5847 5817 405 0 0 0 chrX 57621944 57621989 -104977941 + (TA)n Simple_repeat Simple_repeat 2 46 0 2842 94 97 18 chrX 57621989 57622143 -104977787 - L1PB1 LINE L1 -334 5817 5602 4010 175 5 10 chrX 57622149 57622469 -104977461 - L1 LINE L1 -1310 4836 4516 342 0 0 0 chrX 57622469 57622507 -104977423 + (TG)n Simple_repeat Simple_repeat 2 39 0 2140 117 0 0 chrX 57622509 57622790 -104977140 - AluSx SINE Alu -31 281 1 4010 175 5 10 chrX 57622790 57623247 -104976683 - L1 LINE L1 -1631 4515 4060 397 274 0 40 chrX 57623583 57623707 -104976223 + L1M3c LINE L1 1814 1932 -5105 691 209 16 8 chrX 57623710 57623839 -104976091 + AluJb SINE Alu 2 131 -181 565 271 42 1 chrX 57623860 57624088 -104975842 + L1M3c LINE L1 1937 2191 -4846 1771 151 0 8 chrX 57624099 57624364 -104975566 + AluSx SINE Alu 1 263 -49 1053 167 0 4 chrX 57624398 57624654 -104975276 + (TA)n Simple_repeat Simple_repeat 1 256 0 234 179 45 0 chrX 57624655 57624722 -104975208 - L1MCa LINE L1 -4362 2064 1995 294 179 0 0 chrX 57624726 57624782 -104975148 + (TA)n Simple_repeat Simple_repeat 2 57 0 229 188 29 14 chrX 57624783 57624852 -104975078 - L1MCa LINE L1 -4362 2064 1995 1041 145 0 0 chrX 57624856 57625035 -104974895 + (TA)n Simple_repeat Simple_repeat 2 180 0 2144 121 3 0 chrX 57625035 57625324 -104974606 - AluSg SINE Alu -20 290 1 2573 139 3 10 chrX 57625336 57625711 -104974219 - L1PB3 LINE L1 -1 6153 5780 2004 146 0 7 chrX 57625711 57626012 -104973918 - AluSx SINE Alu -13 299 1 2573 139 3 10 chrX 57626012 57626024 -104973906 - L1PB3 LINE L1 -374 5780 5769 3253 154 45 44 chrX 57626024 57626270 -104973660 - L1PA8A LINE L1 -3 6128 5884 1043 63 0 53 chrX 57626270 57626460 -104973470 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3253 154 45 44 chrX 57626460 57626512 -104973418 - L1PA8A LINE L1 -247 5884 5834 2124 123 17 3 chrX 57626512 57626814 -104973116 - AluSx SINE Alu -6 306 1 3253 154 45 44 chrX 57626814 57627104 -104972826 - L1PA8A LINE L1 -297 5834 5546 2367 78 0 10 chrX 57627104 57627398 -104972532 - AluY SINE Alu -20 291 1 3253 154 45 44 chrX 57627398 57628010 -104971920 - L1PA8A LINE L1 -585 5546 4891 920 229 41 60 chrX 57628017 57628417 -104971513 + L1M4c LINE L1 1075 1787 -4516 * 7184 210 40 26 chrX 57628406 57630571 -104969359 + L1M2c LINE L1 16 2571 -4994 1213 78 0 0 chrX 57630570 57630724 -104969206 - THE1B-int LTR MaLR -1426 154 1 * 2155 150 72 20 chrX 57630724 57631070 -104968860 - THE1B LTR MaLR 0 364 1 1994 182 16 3 chrX 57631072 57631493 -104968437 + L1MA3 LINE L1 3288 3754 -3891 3576 94 43 39 chrX 57631499 57632008 -104967922 + MER9 LTR ERVK 1 511 0 21538 67 7 7 chrX 57632008 57632769 -104967161 + HERVK9 LTR ERVK 1 761 -5155 200 211 0 88 chrX 57632769 57632826 -104967104 + MER5B DNA MER1_type 55 106 -72 21538 67 7 7 chrX 57632826 57634795 -104965135 + HERVK9 LTR ERVK 761 2786 -3130 3367 36 0 0 chrX 57634795 57635180 -104964750 + HERVK9 LTR ERVK 3711 4095 -1821 302 56 0 0 chrX 57635197 57635233 -104964697 + HERVK9 LTR ERVK 3906 3941 -1975 5858 69 14 2 chrX 57635265 57636407 -104963523 + HERVK9 LTR ERVK 4745 5916 0 3498 117 49 4 chrX 57636407 57636896 -104963034 + MER9 LTR ERVK 1 511 0 4832 167 34 3 chrX 57636897 57637934 -104961996 + L1MA3 LINE L1 5834 6907 -743 2677 138 9 14 chrX 57637934 57638101 -104961829 + L1MA3 LINE L1 7301 7467 -257 2000 126 4 0 chrX 57638101 57638411 -104961519 + AluSx SINE Alu 5 315 0 2677 138 9 14 chrX 57638411 57638657 -104961273 + L1MA3 LINE L1 7467 7724 0 264 249 8 0 chrX 57638672 57638742 -104961188 + L1M2c LINE L1 2646 3101 -4465 2585 230 28 16 chrX 57638742 57639018 -104960912 + MLT2B3 LTR ERVL 3 274 -280 2089 148 132 23 chrX 57639018 57639404 -104960526 + MSTA LTR MaLR 1 428 0 2585 230 28 16 chrX 57639404 57639633 -104960297 + MLT2B3 LTR ERVL 274 517 -37 564 42 0 0 chrX 57639633 57639704 -104960226 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 2585 230 28 16 chrX 57639704 57639741 -104960189 + MLT2B3 LTR ERVL 517 552 -2 24931 195 24 12 chrX 57639744 57644325 -104955605 + ERVL-B3 LTR ERVL 4 4642 -1122 22887 196 15 17 chrX 57644327 57644567 -104955363 + L1P4 LINE L1 1 240 -7372 3903 34 0 0 chrX 57644567 57645004 -104954926 + L1PA5 LINE L1 5717 6153 -1 22887 196 15 17 chrX 57645004 57647720 -104952210 + L1P4 LINE L1 240 2962 -4650 1808 177 0 7 chrX 57647720 57648019 -104951911 + AluSx SINE Alu 1 297 -15 22887 196 15 17 chrX 57648019 57651207 -104948723 + L1P4 LINE L1 2962 6917 -695 1437 129 17 4 chrX 57651200 57651432 -104948498 + L1P LINE L1 3772 4006 -2140 * 7079 60 13 25 chrX 57651432 57652118 -104947812 + L1PA7 LINE L1 5089 5762 -392 2422 88 3 0 chrX 57652118 57652423 -104947507 + AluY SINE Alu 1 306 -5 7079 60 13 25 chrX 57652423 57652810 -104947120 + L1PA7 LINE L1 5762 6152 -2 553 224 48 24 chrX 57652818 57652983 -104946947 - Ricksha DNA DNA -2827 419 251 5162 160 21 19 chrX 57652986 57653382 -104946548 - ERVL LTR ERVL -818 4946 4552 2364 49 45 0 chrX 57653382 57653669 -104946261 - AluY SINE Alu -11 300 1 5162 160 21 19 chrX 57653669 57654130 -104945800 - ERVL LTR ERVL -1212 4552 4087 2904 141 2 2 chrX 57654131 57654564 -104945366 - ERVL LTR ERVL -2886 2878 2446 3486 235 79 28 chrX 57654564 57655690 -104944240 - L1M3c LINE L1 -4838 2199 1016 731 209 162 0 chrX 57655690 57655881 -104944049 - L1M3c LINE L1 -6701 329 108 5843 174 59 1 chrX 57655951 57656951 -104942979 - ERVL LTR ERVL -3304 2460 1403 22 0 0 0 chrX 57657229 57657251 -104942679 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chrX 57657925 57657974 -104941956 + AT_rich Low_complexity Low_complexity 1 49 0 230 286 167 0 chrX 57658133 57658217 -104941713 + MER5A DNA MER1_type 9 106 -83 293 350 14 21 chrX 57658279 57658419 -104941511 + MER5A DNA MER1_type 7 145 -44 755 211 36 62 chrX 57658429 57658547 -104941383 - MER5A DNA MER1_type 0 189 76 2385 46 10 30 chrX 57658547 57658849 -104941081 - AluY SINE Alu -15 296 1 755 211 36 62 chrX 57658849 57658924 -104941006 - MER5A DNA MER1_type -113 76 1 188 260 62 73 chrX 57659515 57659611 -104940319 - MIR SINE MIR -71 191 97 4932 135 53 9 chrX 57659611 57660476 -104939454 + MER4D LTR ERV1 1 903 0 279 221 29 68 chrX 57660514 57660603 -104939327 - MIR SINE MIR -109 99 4 1055 213 22 40 chrX 57660875 57661269 -104938661 + L1MB5 LINE L1 2563 3791 -2355 * 3441 187 68 39 chrX 57661260 57662488 -104937442 + L1MB5 LINE L1 4334 5524 -650 245 29 29 0 chrX 57662488 57662522 -104937408 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3441 187 68 39 chrX 57662522 57662581 -104937349 + L1MB5 LINE L1 5524 5580 -594 1817 169 0 36 chrX 57662581 57662882 -104937048 + AluJb SINE Alu 1 290 -22 3441 187 68 39 chrX 57662882 57663364 -104936566 + L1MB5 LINE L1 5580 6166 -8 21 71 0 0 chrX 57663367 57663409 -104936521 + AT_rich Low_complexity Low_complexity 1 42 0 266 0 29 0 chrX 57663411 57663445 -104936485 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5960 161 35 13 chrX 57663452 57663588 -104936342 - L1MA2 LINE L1 -22 7701 7570 306 0 0 0 chrX 57663588 57663622 -104936308 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2156 107 0 0 chrX 57663622 57663903 -104936027 - AluSg SINE Alu -29 281 1 5960 161 35 13 chrX 57663903 57665750 -104934180 - L1MA2 LINE L1 -153 7570 5663 378 0 0 0 chrX 57665750 57665792 -104934138 + (TG)n Simple_repeat Simple_repeat 1 42 0 5960 161 35 13 chrX 57665792 57666047 -104933883 - L1MA2 LINE L1 -2060 5663 5415 218 204 0 74 chrX 57668177 57668285 -104931645 + CT-rich Low_complexity Low_complexity 2 101 0 336 291 123 52 chrX 57668475 57668814 -104931116 + L1M2 LINE L1 679 980 -5869 16431 188 51 13 chrX 57668821 57669703 -104930227 - L1MA2 LINE L1 -2136 5429 4582 2095 136 0 0 chrX 57669703 57670011 -104929919 - AluSx SINE Alu -4 308 1 16431 188 51 13 chrX 57670011 57674343 -104925587 - L1MA2 LINE L1 -2983 4582 22 226 333 15 0 chrX 57674955 57675021 -104924909 + L3 LINE CR1 1508 1574 -3 22 0 0 0 chrX 57675164 57675186 -104924744 + AT_rich Low_complexity Low_complexity 1 22 0 6133 169 20 14 chrX 57675186 57676562 -104923368 - L1MA2 LINE L1 -164 7559 6161 1504 157 135 70 chrX 57676562 57676963 -104922967 - MSTA LTR MaLR -1 427 1 6133 169 20 14 chrX 57676963 57677781 -104922149 - L1MA2 LINE L1 -1562 6161 5349 22153 110 11 9 chrX 57677786 57681701 -104918229 + L1PA8 LINE L1 1783 5706 -448 2574 71 87 5 chrX 57681702 57682069 -104917861 + L1PA8 LINE L1 5776 6172 0 9114 78 7 104 chrX 57682080 57683601 -104916329 - SVA Other Other -1 1385 13 234 0 0 0 chrX 57683601 57683627 -104916303 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 299 104 0 0 chrX 57683627 57683675 -104916255 - L1MA2 LINE L1 -2207 5358 5311 1354 255 41 25 chrX 57684419 57684929 -104915001 - L1MA2 LINE L1 -3304 4261 3744 4928 58 5 5 chrX 57684933 57685567 -104914363 - L1PA5 LINE L1 -4 6150 5517 35801 68 5 0 chrX 57685567 57690488 -104909442 + L1P LINE L1 1 4941 -1205 687 149 16 112 chrX 57690492 57690744 -104909186 - L1MA2 LINE L1 -3816 3749 3523 6232 44 25 1 chrX 57690823 57696752 -104903178 - L1PA3 LINE L1 0 6155 1 17598 172 36 15 chrX 57696752 57697235 -104902695 - L1MA2 LINE L1 -4026 3539 3068 2153 112 3 3 chrX 57697235 57697531 -104902399 - AluY SINE Alu -15 296 1 17598 172 36 15 chrX 57697531 57700333 -104899597 - L1MA2 LINE L1 -4497 3068 176 2585 110 5 3 chrX 57700333 57700707 -104899223 + THE1C LTR MaLR 1 375 0 17598 172 36 15 chrX 57700707 57700869 -104899061 - L1MA2 LINE L1 -7389 176 19 888 115 0 29 chrX 57700913 57701052 -104898878 - L1PA16 LINE L1 -9 6157 6023 577 94 14 56 chrX 57701057 57701351 -104898579 + (TA)n Simple_repeat Simple_repeat 1 281 0 309 183 21 54 chrX 57701355 57701448 -104898482 - L1MC4 LINE L1 -1339 6703 6614 5935 44 0 4 chrX 57701451 57702171 -104897759 - L1PA5 LINE L1 -9 6145 5429 347 319 50 28 chrX 57702526 57702667 -104897263 + MIR SINE MIR 49 192 -70 389 187 0 11 chrX 57702680 57702771 -104897159 + CT-rich Low_complexity Low_complexity 3 92 0 618 99 9 18 chrX 57702801 57702912 -104897018 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 269 352 71 25 chrX 57703902 57704098 -104895832 + MIR SINE MIR 12 216 -46 21 71 0 0 chrX 57704228 57704270 -104895660 + AT_rich Low_complexity Low_complexity 1 42 0 633 321 10 15 chrX 57704272 57704468 -104895462 - MIR3 SINE MIR -5 203 9 513 318 55 5 chrX 57704883 57705084 -104894846 - MIR SINE MIR -50 212 2 819 142 0 30 chrX 57705248 57705382 -104894548 - FLAM_C SINE Alu -1 132 3 627 289 32 5 chrX 57705872 57706062 -104893868 + MIR SINE MIR 23 217 -45 282 291 155 0 chrX 57708272 57708375 -104891555 + L2 LINE L2 3187 3305 -8 1419 102 41 3 chrX 57709399 57709686 -104890244 - LTR7 LTR ERV1 -63 387 1 2682 125 12 12 chrX 57709686 57710117 -104889813 - HERVH LTR ERV1 0 7713 7283 19946 129 65 43 chrX 57710125 57713577 -104886353 - HERVH LTR ERV1 -2699 5014 1487 1982 226 54 4 chrX 57714333 57714812 -104885118 - L1ME LINE L1 -379 5787 5285 277 170 0 0 chrX 57714819 57714872 -104885058 - L1MB8 LINE L1 -6 6172 6120 8676 140 13 22 chrX 57714873 57716341 -104883589 - Tigger1 DNA MER2_type 0 2418 965 8733 100 12 3 chrX 57716346 57717629 -104882301 - L1P LINE L1 -3022 3124 1831 32 91 0 0 chrX 57718494 57718582 -104881348 + AT_rich Low_complexity Low_complexity 1 88 0 332 283 67 38 chrX 57718582 57718822 -104881108 + L1ME4a LINE L1 5772 6018 -103 1878 144 62 0 chrX 57719184 57719475 -104880455 - AluSx SINE Alu -3 309 1 25 31 0 0 chrX 57719747 57719779 -104880151 + AT_rich Low_complexity Low_complexity 1 32 0 10077 102 8 26 chrX 57719848 57721597 -104878333 - L1P3 LINE L1 -4304 2157 411 2893 154 42 84 chrX 57721598 57722015 -104877915 - Tigger1 DNA MER2_type -1801 617 235 1542 162 75 7 chrX 57722015 57722119 -104877811 + AluJb SINE Alu 8 103 -209 228 67 0 0 chrX 57722119 57722149 -104877781 + (CA)n Simple_repeat Simple_repeat 1 30 0 1542 162 75 7 chrX 57722149 57722322 -104877608 + AluJb SINE Alu 103 304 -8 2893 154 42 84 chrX 57722322 57722548 -104877382 - Tigger1 DNA MER2_type -2183 235 1 434 246 26 12 chrX 57722556 57722679 -104877251 - L1MB7 LINE L1 -66 6114 5992 23084 135 29 32 chrX 57722685 57728454 -104871476 - L1PA7 LINE L1 0 6469 711 13084 201 30 75 chrX 57728456 57729457 -104870473 - L1PA13 LINE L1 -918 5879 4835 5309 130 31 0 chrX 57729457 57730838 -104869092 - L1PA13 LINE L1 -4 6159 4748 13084 201 30 75 chrX 57730838 57736033 -104863897 - L1PA13 LINE L1 -1962 4835 2 3768 212 20 13 chrX 57736039 57736957 -104862973 - L1 LINE L1 -1885 4261 3338 1782 141 3 22 chrX 57736934 57737247 -104862683 + L1PA15-16 LINE L1 2652 2958 -3891 * 740 264 23 0 chrX 57737515 57737735 -104862195 - L1MA7 LINE L1 -11 6280 6056 1113 103 0 0 chrX 57737741 57737896 -104862034 + MER41A LTR ERV1 400 554 0 12282 135 37 21 chrX 57737896 57739880 -104860050 + MER41A-int LTR ERV1 1 2017 -3929 4781 139 67 11 chrX 57739876 57740688 -104859242 + MER41A-int LTR ERV1 2781 3637 -3900 * 12094 101 15 41 chrX 57740676 57743021 -104856909 + MER41B-int LTR ERV1 2856 5946 0 3706 128 6 2 chrX 57743021 57743570 -104856360 + MER41B LTR ERV1 1 551 -84 351 0 0 0 chrX 57743574 57743613 -104856317 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1068 230 24 4 chrX 57743617 57743869 -104856061 - L1MA7 LINE L1 -233 6058 5802 7294 38 6 0 chrX 57744349 57746607 -104853323 + L1PA4 LINE L1 3740 6151 -4 180 213 0 0 chrX 57747852 57747913 -104852017 + (TA)n Simple_repeat Simple_repeat 2 62 0 2468 147 63 19 chrX 57747914 57748390 -104851540 - L1MA7 LINE L1 -502 5789 5293 1698 218 9 12 chrX 57748388 57748814 -104851116 - L1MA4 LINE L1 -36 6264 5840 * 4157 214 91 18 chrX 57748796 57749988 -104849942 - L1MA4 LINE L1 -802 5344 4066 2649 241 38 10 chrX 57749981 57750807 -104849123 + L1 LINE L1 2250 3098 -3048 * 5913 70 0 1 chrX 57750804 57751823 -104848107 + L1PA8 LINE L1 4987 6004 -168 2427 242 87 8 chrX 57751859 57752763 -104847167 + L1 LINE L1 3988 4990 -1156 1698 203 6 18 chrX 57752763 57753103 -104846827 + MSTB1 LTR MaLR 1 336 -96 10476 203 25 14 chrX 57753111 57756365 -104843565 - L1PA13 LINE L1 -6 6808 3515 504 49 49 0 chrX 57756365 57756446 -104843484 + L1P LINE L1 5286 5370 -781 2168 130 0 16 chrX 57756446 57756836 -104843094 + AluSq SINE Alu 1 385 0 2874 98 7 9 chrX 57756839 57757279 -104842651 + L1P5 LINE L1 5354 5792 -359 312 253 11 22 chrX 57757297 57757388 -104842542 + L1MC4 LINE L1 6614 6703 -1339 2455 108 3 8 chrX 57757400 57757783 -104842147 + L1PB1 LINE L1 5777 6151 0 317 284 27 38 chrX 57757788 57757971 -104841959 - L1PA13 LINE L1 -3267 3530 3350 4091 228 21 18 chrX 57757973 57759700 -104840230 - L1PA13 LINE L1 -3607 3190 1424 528 253 76 15 chrX 57759694 57759892 -104840038 - L1MEc LINE L1 -4316 2080 1871 * 295 235 0 12 chrX 57759911 57759992 -104839938 - L1MDb LINE L1 -3994 2593 2514 2312 263 91 37 chrX 57760042 57761594 -104838336 - L1MDb LINE L1 -4030 2376 774 274 412 12 0 chrX 57761628 57761793 -104838137 - L1MDb LINE L1 -5573 823 657 1437 219 36 20 chrX 57761930 57761985 -104837945 + MLT1A1 LTR MaLR 4 57 -308 1896 167 3 0 chrX 57761985 57762296 -104837634 + AluSx SINE Alu 1 312 0 1437 219 36 20 chrX 57762296 57762596 -104837334 + MLT1A1 LTR MaLR 57 365 0 22965 71 5 5 chrX 57763010 57766914 -104833016 - L1PA6 LINE L1 -1 6153 2248 722 238 6 0 chrX 57766924 57767096 -104832834 - L1MEc LINE L1 -3303 2912 2740 * 1074 303 118 18 chrX 57767087 57767962 -104831968 - L1MEc LINE L1 -4690 1706 745 1825 242 62 53 chrX 57767984 57768491 -104831439 - L1ME1 LINE L1 -5 6161 5645 1994 122 0 7 chrX 57768491 57768786 -104831144 + AluSx SINE Alu 1 293 -19 1825 242 62 53 chrX 57768786 57768960 -104830970 - L1ME1 LINE L1 -521 5645 5474 218 340 75 0 chrX 57769228 57769322 -104830608 - MIR3 SINE MIR -9 199 99 254 303 84 14 chrX 57769855 57769997 -104829933 + MIR SINE MIR 28 179 -83 2583 260 81 19 chrX 57770013 57770523 -104829407 - L1ME1 LINE L1 -743 5403 4926 2526 56 0 0 chrX 57770523 57770829 -104829101 - AluY SINE Alu -3 308 3 2583 260 81 19 chrX 57770829 57771785 -104828145 - L1ME1 LINE L1 -1220 4926 3825 957 167 18 0 chrX 57771796 57771964 -104827966 - L1PA14 LINE L1 -9 6152 5982 3725 257 34 18 chrX 57771991 57773301 -104826629 - L1M4 LINE L1 -981 5165 3836 5849 103 9 27 chrX 57773304 57774326 -104825604 - L1PB1 LINE L1 -1 6866 5861 6429 147 56 8 chrX 57774327 57775527 -104824403 - L1PB1 LINE L1 -5484 1379 1 1160 273 31 3 chrX 57775669 57775995 -104823935 - L1M4 LINE L1 -2290 3856 3522 1111 173 26 22 chrX 57776035 57776066 -104823864 - L1M2 LINE L1 -525 5787 5758 2182 126 13 46 chrX 57776066 57776454 -104823476 + THE1C LTR MaLR 1 375 0 1111 173 26 22 chrX 57776454 57776648 -104823282 - L1M2 LINE L1 -554 5758 5561 713 238 0 15 chrX 57776647 57776849 -104823081 - L1M4 LINE L1 -3039 3107 2909 * 13070 194 28 25 chrX 57776844 57778659 -104821271 - L1PBa LINE L1 -826 6036 4228 3604 120 16 2 chrX 57778659 57779226 -104820704 - L1PB1 LINE L1 -4 6147 5573 13070 194 28 25 chrX 57779226 57782046 -104817884 - L1PBa LINE L1 -2634 4228 1385 1063 250 61 82 chrX 57782071 57782176 -104817754 - L1M4 LINE L1 -3226 2920 2814 1675 178 17 14 chrX 57782176 57782463 -104817467 - AluJo SINE Alu -24 288 1 1063 250 61 82 chrX 57782463 57782537 -104817393 - L1M4 LINE L1 -3332 2814 2740 2151 103 39 12 chrX 57782537 57782867 -104817063 - L1PA13 LINE L1 -11 6152 5814 1063 250 61 82 chrX 57782867 57783358 -104816572 - L1M4 LINE L1 -3406 2740 2261 3050 201 29 8 chrX 57783358 57784081 -104815849 - L1MB1 LINE L1 -3 6165 5428 1063 250 61 82 chrX 57784081 57784095 -104815835 - L1M4 LINE L1 -3885 2261 2248 364 233 11 0 chrX 57784097 57784187 -104815743 - L1MA4A LINE L1 -24 6981 6891 10022 181 42 105 chrX 57784194 57787156 -104812774 - L1MA4A LINE L1 -184 6821 3673 222 37 0 0 chrX 57787156 57787183 -104812747 + (TA)n Simple_repeat Simple_repeat 2 28 0 10022 181 42 105 chrX 57787183 57787563 -104812367 - L1MA4A LINE L1 -3332 3673 3671 769 132 0 39 chrX 57787563 57787692 -104812238 - FLAM_C SINE Alu -19 124 1 10022 181 42 105 chrX 57787692 57788402 -104811528 - L1MA4A LINE L1 -3334 3671 2918 253 203 31 0 chrX 57788416 57788480 -104811450 + (TA)n Simple_repeat Simple_repeat 2 67 0 3832 203 41 25 chrX 57788572 57788589 -104811341 - L1MA4A LINE L1 -3949 2900 2885 3566 136 19 7 chrX 57788589 57789185 -104810745 - L1PA16 LINE L1 -3 6163 5561 3832 203 41 25 chrX 57789185 57789843 -104810087 - L1MA4A LINE L1 -3964 2885 2202 1289 122 5 0 chrX 57789843 57790056 -104809874 + L1PB1 LINE L1 5952 6165 0 3832 203 41 25 chrX 57790056 57790336 -104809594 - L1MA4A LINE L1 -4647 2202 1928 1843 211 18 0 chrX 57890336 57890672 -104709258 - L1MA4A LINE L1 -6444 405 64 1787 258 28 22 chrX 57890681 57891334 -104708596 - L1M4c LINE L1 -4103 1541 1291 2316 77 6 13 chrX 57892301 57892614 -104707316 - AluY SINE Alu 0 311 1 369 111 9 0 chrX 57893810 57893891 -104706039 - L1M4c LINE L1 -4847 1718 1634 9077 217 30 28 chrX 57893897 57894751 -104705179 - L1 LINE L1 -889 5257 4406 1616 206 7 0 chrX 57894751 57895052 -104704878 + AluJo SINE Alu 5 307 -5 9077 217 30 28 chrX 57895052 57895173 -104704757 - L1 LINE L1 -1740 4406 4287 2221 120 0 0 chrX 57895173 57895482 -104704448 - AluSc SINE Alu 0 309 1 9077 217 30 28 chrX 57895482 57896884 -104703046 - L1 LINE L1 -1859 4287 2875 2894 271 65 47 chrX 57896885 57898132 -104701798 - L1M4c LINE L1 -5266 1276 8 1056 315 36 52 chrX 57898142 57898802 -104701128 - L1MEc LINE L1 -5708 688 39 180 125 0 0 chrX 57898809 57898841 -104701089 + (CAA)n Simple_repeat Simple_repeat 2 33 0 368 275 188 0 chrX 57899503 57899652 -104700278 + MIR3 SINE MIR 27 203 -5 479 328 65 32 chrX 57899749 57899996 -104699934 + MIR SINE MIR 5 259 -3 3706 150 20 6 chrX 57900229 57900881 -104699049 - L1PB3 LINE L1 0 6154 5494 190 318 16 16 chrX 57900995 57901058 -104698872 - L3 LINE CR1 -351 1226 1164 587 327 60 16 chrX 57901339 57901587 -104698343 - MIR SINE MIR -1 261 3 234 309 114 16 chrX 57901798 57901921 -104698009 + MIR SINE MIR 63 197 -65 268 185 15 131 chrX 57902677 57902807 -104697123 + MER113 DNA MER1_type? 8 122 -399 327 216 0 54 chrX 57902962 57903036 -104696894 + MER113 DNA MER1_type? 452 521 0 617 291 55 21 chrX 57903544 57903781 -104696149 - MIR SINE MIR -15 247 3 638 181 0 16 chrX 57903831 57903958 -104695972 - L1P5 LINE L1 -544 5612 5488 1063 168 5 5 chrX 57903959 57904150 -104695780 - L1PA15 LINE L1 -1 6164 5974 353 229 86 29 chrX 57904172 57904312 -104695618 - L1 LINE L1 -1680 4466 4319 4386 103 3 3 chrX 57904317 57904949 -104694981 - L1PB1 LINE L1 0 6802 6171 8628 208 14 24 chrX 57904950 57906917 -104693013 - L1PB1 LINE L1 -970 5827 3881 6711 44 1 1 chrX 57906933 57907758 -104692172 - L1PA6 LINE L1 -1 6153 5329 5323 242 28 33 chrX 57907755 57911446 -104688484 - L1PB1 LINE L1 -2901 3896 9 * 838 248 53 27 chrX 57911905 57912125 -104687805 + MIR SINE MIR 7 227 -35 14048 37 1 0 chrX 57912125 57914607 -104685323 + L1PA5 LINE L1 3667 6152 -2 3924 187 24 14 chrX 57914607 57915934 -104683996 + L1P5 LINE L1 4282 5622 -529 440 241 69 17 chrX 57915945 57916061 -104683869 + L2 LINE L2 3188 3309 -4 321 303 32 64 chrX 57916067 57916217 -104683713 - L1M4 LINE L1 -1311 4835 4693 1740 118 57 11 chrX 57916217 57916496 -104683434 + AluSx SINE Alu 1 292 -20 321 303 32 64 chrX 57916496 57916563 -104683367 - L1M4 LINE L1 -1453 4693 4625 10131 165 34 25 chrX 57916653 57919531 -104680399 - L1PA13 LINE L1 -5 6158 3264 1000 186 36 27 chrX 57919736 57919790 -104680140 + Tigger1 DNA MER2_type 1 53 -2365 1527 188 61 3 chrX 57919790 57920083 -104679847 - AluJb SINE Alu -1 311 2 1000 186 36 27 chrX 57920083 57920248 -104679682 + Tigger1 DNA MER2_type 53 222 -2196 5141 188 23 8 chrX 57920267 57922224 -104677706 - L1MA4 LINE L1 -1 6579 4598 19791 218 33 25 chrX 57922234 57927280 -104672650 + L1PA12 LINE L1 8 5912 -1672 252 0 0 0 chrX 57927280 57927308 -104672622 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 19791 218 33 25 chrX 57927308 57928246 -104671684 + L1PA12 LINE L1 5912 6841 -743 683 274 17 11 chrX 57928251 57928430 -104671500 + LTR28 LTR ERV1 1 180 -840 763 251 83 55 chrX 57928458 57928941 -104670989 + MER52A LTR ERV1 278 1470 -35 538 279 6 6 chrX 57928944 57929102 -104670828 + MER52A LTR ERV1 1598 1755 0 4861 117 14 7 chrX 57929102 57929844 -104670086 + L1PA11 LINE L1 5405 6151 -23 3366 198 40 24 chrX 57929854 57932145 -104667785 - L1MA4 LINE L1 -1837 4589 2062 3717 139 217 88 chrX 57932147 57932286 -104667644 + MER11B LTR ERVK 1 121 -1115 2212 111 0 19 chrX 57932286 57932593 -104667337 - AluY SINE Alu -10 301 1 3717 139 217 88 chrX 57932593 57933544 -104666386 + MER11B LTR ERVK 121 1232 -4 1277 236 29 5 chrX 57933549 57933930 -104666000 - L1MA4 LINE L1 -4361 2065 1564 299 164 0 0 chrX 57933940 57934001 -104665929 - L1PB1 LINE L1 -22 6845 6785 * 43495 43 1 3 chrX 57933999 57940164 -104659766 - L1PA3 LINE L1 0 6155 1 13173 164 66 20 chrX 57940164 57941229 -104658701 - L1PB1 LINE L1 -68 6799 5784 362 131 0 7 chrX 57941229 57941294 -104658636 - Alu SINE Alu -6 296 242 13173 164 66 20 chrX 57941294 57941894 -104658036 - L1PB1 LINE L1 -1083 5784 5213 450 0 0 0 chrX 57941894 57941944 -104657986 + (TTA)n Simple_repeat Simple_repeat 2 51 0 13173 164 66 20 chrX 57941944 57944694 -104655236 - L1PB1 LINE L1 -1654 5213 1982 477 50 0 0 chrX 57944694 57944754 -104655176 + (TG)n Simple_repeat Simple_repeat 1 60 0 13173 164 66 20 chrX 57944754 57946166 -104653764 - L1PB1 LINE L1 -4885 1982 636 1300 131 0 0 chrX 57946168 57946367 -104653563 - L1PB1 LINE L1 -6663 200 2 5236 253 44 27 chrX 57946371 57948495 -104651435 - L1M1 LINE L1 -4705 2860 12 11280 163 34 18 chrX 57948495 57950600 -104649330 + Tigger1 DNA MER2_type 217 2355 -63 249 224 0 0 chrX 57950600 57950658 -104649272 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 429 244 0 0 chrX 57950675 57950757 -104649173 + Tigger1 DNA MER2_type 2337 2418 0 609 86 12 0 chrX 57950943 57951024 -104648906 - MSTB LTR MaLR -344 82 1 541 135 42 0 chrX 57951024 57951117 -104648813 + MER46A DNA MER2_type 140 236 0 260 224 0 0 chrX 57951218 57951276 -104648654 + L1PB1 LINE L1 5730 5787 -515 29 28 0 0 chrX 57951377 57951413 -104648517 + AT_rich Low_complexity Low_complexity 1 36 0 594 292 0 7 chrX 57951648 57951785 -104648145 - L2 LINE L2 0 3272 3137 618 90 57 26 chrX 57951802 57952096 -104647834 + (TA)n Simple_repeat Simple_repeat 1 303 0 1750 152 10 3 chrX 57952197 57952507 -104647423 + L1PB1 LINE L1 5832 6143 -8 23 0 0 0 chrX 57952511 57952534 -104647396 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chrX 57952628 57952651 -104647279 + (A)n Simple_repeat Simple_repeat 1 23 0 1996 281 46 17 chrX 57952651 57953542 -104646388 + L1MC/D LINE L1 2963 3879 -2267 369 0 0 0 chrX 57953546 57953587 -104646343 + (TA)n Simple_repeat Simple_repeat 1 41 0 13089 115 51 88 chrX 57953587 57953995 -104645935 - Tigger1 DNA MER2_type 0 2418 1997 877 209 0 0 chrX 57953995 57954143 -104645787 - FRAM SINE Alu -16 160 13 13089 115 51 88 chrX 57954143 57956091 -104643839 - Tigger1 DNA MER2_type -421 1997 6 4593 214 70 12 chrX 57956106 57957598 -104642332 + L1MC/D LINE L1 3909 5484 -743 4013 182 20 8 chrX 57957586 57958382 -104641548 + L1MB8 LINE L1 5362 6167 -11 * 6670 147 44 18 chrX 57958598 57959682 -104640248 + Tigger3b DNA MER2_type 2 1121 -1907 2258 113 62 6 chrX 57959682 57960036 -104639894 - THE1C LTR MaLR 0 375 2 6670 147 44 18 chrX 57960036 57960150 -104639780 + Tigger3b DNA MER2_type 1121 1231 0 202 263 17 51 chrX 57960429 57960547 -104639383 + L2 LINE L2 2147 2260 -1054 793 199 152 28 chrX 57960596 57960807 -104639123 + MIR SINE MIR 25 261 -1 210 355 133 18 chrX 57960824 57961156 -104638774 + L2 LINE L2 2350 2719 -595 274 204 114 23 chrX 57961525 57961613 -104638317 - MER112 DNA MER1_type -50 210 115 716 271 70 76 chrX 57961838 57962140 -104637790 + LTR41 LTR ERVL 352 651 -122 6621 77 16 0 chrX 57962140 57963820 -104636110 - L1PA8 LINE L1 -3 6484 4789 6159 121 26 17 chrX 57963820 57964815 -104635115 + MER11C LTR ERVK 1 1004 -67 15151 103 13 10 chrX 57964849 57967163 -104632767 - L1PA8 LINE L1 -1668 4793 2473 10757 134 28 37 chrX 57967159 57969126 -104630804 - L1PA8 LINE L1 -4482 1979 6 * 283 161 7 182 chrX 57969126 57969269 -104630661 + LTR41 LTR ERVL 641 758 -15 315 0 0 0 chrX 57969312 57969347 -104630583 + (TG)n Simple_repeat Simple_repeat 2 36 0 689 315 195 29 chrX 57970061 57970575 -104629355 + L3 LINE CR1 141 739 -838 957 166 162 8 chrX 57970597 57970850 -104629080 - Charlie1a DNA MER1_type -5 1450 1159 4558 166 129 70 chrX 57970939 57971181 -104628749 - L1MCa LINE L1 -5229 1197 971 1589 59 14 18 chrX 57971181 57971400 -104628530 - L1PA10 LINE L1 -2 6166 5949 4558 166 129 70 chrX 57971400 57972269 -104627661 - L1MCa LINE L1 -5455 971 21 3551 205 53 22 chrX 57972269 57973122 -104626808 - Charlie1a DNA MER1_type -572 883 5 2588 115 53 29 chrX 57973240 57973658 -104626272 - MSTA LTR MaLR 0 428 1 8696 178 29 6 chrX 57973658 57975272 -104624658 - MSTA-int LTR MaLR 0 1651 1 2637 146 24 0 chrX 57975272 57975690 -104624240 - MSTA LTR MaLR 0 428 1 554 202 9 0 chrX 57975708 57975822 -104624108 - L1MC1 LINE L1 -6 6327 6213 395 303 86 0 chrX 57975853 57976005 -104623925 + MIR SINE MIR 82 246 -16 235 276 0 0 chrX 57976040 57976098 -104623832 + L3 LINE CR1 755 812 -765 1185 206 107 29 chrX 57976100 57976410 -104623520 - MLT1D LTR MaLR 0 505 172 2314 161 49 5 chrX 57976430 57976840 -104623090 - MSTA LTR MaLR 0 428 1 681 154 22 37 chrX 57976840 57976976 -104622954 - MLT1D LTR MaLR -349 156 23 387 296 110 78 chrX 57976982 57977240 -104622690 + L3 LINE CR1 808 1083 -494 7457 122 35 3 chrX 57977240 57978431 -104621499 + Tigger3b DNA MER2_type 1 1229 -2 387 296 110 78 chrX 57978431 57978544 -104621386 + L3 LINE CR1 1083 1191 -386 * 836 245 68 24 chrX 57978532 57978781 -104621149 - MIR SINE MIR 0 262 3 367 331 16 8 chrX 57978797 57978924 -104621006 + L3 LINE CR1 1217 1344 -233 277 182 0 0 chrX 57979022 57979077 -104620853 + Tigger3(Golem) DNA MER2_type 2712 2766 -263 * 524 130 0 0 chrX 57979076 57979153 -104620777 - Tigger3(Golem) DNA MER2_type -310 2719 2643 619 234 143 22 chrX 57979509 57979740 -104620190 + MER112 DNA MER1_type 1 259 -1 742 251 102 78 chrX 57979770 57980221 -104619709 + L2 LINE L2 675 1136 -2178 1900 179 11 22 chrX 57980740 57981109 -104618821 - MLT1A1 LTR MaLR 0 365 1 394 222 282 6 chrX 57981211 57981389 -104618541 + L1MC4 LINE L1 6443 6676 -1366 * 1028 211 63 60 chrX 57981373 57981724 -104618206 + L1MC4 LINE L1 7538 7889 -153 1464 199 41 7 chrX 57981789 57982081 -104617849 - AluJo SINE Alu -10 302 1 15458 166 16 5 chrX 57982157 57988404 -104611526 - L1MA1 LINE L1 0 7721 1403 2826 101 18 2 chrX 57988406 57988841 -104611089 + L1MA2 LINE L1 5863 6304 0 2276 269 75 12 chrX 57988842 57989578 -104610352 + L2 LINE L2 1765 2546 -768 2420 256 66 63 chrX 57989586 57991124 -104608806 + L1MDa LINE L1 34 1557 -4983 1586 176 75 17 chrX 57991134 57991429 -104608501 + AluJo SINE Alu 1 312 0 2584 256 75 68 chrX 57991465 57993525 -104606405 + L1M3d LINE L1 3 1413 -4516 10541 210 80 17 chrX 57993556 57997943 -104601987 + L1PA13 LINE L1 1 4622 -2175 408 138 0 0 chrX 57997941 57998006 -104601924 + L1M1 LINE L1 1544 1608 -5957 * 300 67 0 0 chrX 57997996 57998041 -104601889 + L1M1 LINE L1 2202 2246 -5319 * 399 66 100 27 chrX 57998156 57998489 -104601441 + (TA)n Simple_repeat Simple_repeat 1 357 0 22 56 0 0 chrX 57998500 57998536 -104601394 + AT_rich Low_complexity Low_complexity 1 36 0 428 61 110 6 chrX 57998536 57998699 -104601231 + (TA)n Simple_repeat Simple_repeat 1 180 0 849 286 14 5 chrX 57998738 57998951 -104600979 + MIR SINE MIR 48 262 0 343 153 0 0 chrX 57999001 57999060 -104600870 - L1PB1 LINE L1 -2 6149 6091 1325 44 27 6 chrX 57999060 57999243 -104600687 + L1P LINE L1 5170 5356 -790 7993 13 0 1 chrX 57999267 58000674 -104599256 - L1HS LINE L1 0 6155 4750 17581 23 0 0 chrX 58000674 58002755 -104597175 + L1HS LINE L1 2654 4734 -1412 2090 117 0 12 chrX 58002759 58002842 -104597088 - L1PB1 LINE L1 -53 6098 6016 6848 189 26 2 chrX 58002842 58003067 -104596863 - L1PA11 LINE L1 -159 6015 5797 267 31 0 0 chrX 58003067 58003099 -104596831 + (TG)n Simple_repeat Simple_repeat 2 33 0 6848 189 26 2 chrX 58003099 58004958 -104594972 - L1PA11 LINE L1 -377 5797 3854 11754 184 20 6 chrX 58006024 58008093 -104591837 + L1MA3 LINE L1 13 2110 -5455 296 170 0 0 chrX 58008093 58008140 -104591790 - THE1C LTR MaLR 0 355 309 485 49 111 6 chrX 58008146 58008308 -104591622 + (TA)n Simple_repeat Simple_repeat 2 180 0 1840 112 64 22 chrX 58008314 58008628 -104591302 - THE1C LTR MaLR -48 327 1 417 152 196 0 chrX 58008630 58008670 -104591260 + L1MA3 LINE L1 2108 2139 -5426 369 0 0 0 chrX 58008670 58008711 -104591219 + (GA)n Simple_repeat Simple_repeat 1 41 0 417 152 196 0 chrX 58008711 58008762 -104591168 + L1MA3 LINE L1 2139 2217 -5348 * 3633 169 7 15 chrX 58008747 58009500 -104590430 + L1PA11 LINE L1 3095 3841 -2305 6003 96 22 16 chrX 58009503 58009615 -104590315 + L1PA11 LINE L1 5082 5192 -982 2008 139 3 13 chrX 58009615 58009924 -104590006 + AluSx SINE Alu 1 306 -6 6003 96 22 16 chrX 58009924 58010918 -104589012 + L1PA11 LINE L1 5192 6174 0 5030 125 50 21 chrX 58010918 58011257 -104588673 + L1MA3 LINE L1 2194 2522 -5043 1489 186 8 11 chrX 58011257 58011520 -104588410 + AluSx SINE Alu 37 298 -14 5030 125 50 21 chrX 58011520 58012134 -104587796 + L1MA3 LINE L1 2522 3175 -4390 3416 137 4 0 chrX 58012134 58012687 -104587243 - HERVK22 LTR ERVK -2628 4209 3655 311 170 0 0 chrX 58012686 58012739 -104587191 - HERVK22 LTR ERVK -4292 2545 2493 * 502 98 24 12 chrX 58012731 58012813 -104587117 - HERVK22 LTR ERVK -3930 2907 2825 250 146 0 0 chrX 58012889 58012930 -104587000 - HERVK22 LTR ERVK -4470 2367 2327 3753 149 12 29 chrX 58013390 58014082 -104585848 - HERVK22 LTR ERVK -6149 688 9 1550 178 17 126 chrX 58014239 58014778 -104585152 - LTR22B LTR ERVK -12 480 1 7594 190 50 22 chrX 58014778 58015946 -104583984 + L1MA3 LINE L1 3174 4308 -3257 1345 43 0 0 chrX 58015946 58016107 -104583823 - L1PA3 LINE L1 -3 6152 5992 7594 190 50 22 chrX 58016107 58016171 -104583759 + L1MA3 LINE L1 4308 4369 -3196 1891 158 150 3 chrX 58016171 58016544 -104583386 + MSTA LTR MaLR 1 428 0 7594 190 50 22 chrX 58016544 58017279 -104582651 + L1MA3 LINE L1 4369 5082 -2483 1847 121 76 0 chrX 58017279 58017543 -104582387 + AluSc SINE Alu 1 284 -25 324 0 0 0 chrX 58017545 58017581 -104582349 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 7594 190 50 22 chrX 58017581 58018058 -104581872 + L1MA3 LINE L1 5082 5683 -1882 22489 32 7 0 chrX 58018058 58021549 -104578381 + L1PA2 LINE L1 2660 6155 0 7594 190 50 22 chrX 58021549 58021721 -104578209 + L1MA3 LINE L1 5683 5849 -1716 5375 139 14 14 chrX 58021722 58022686 -104577244 + L1MA3 LINE L1 6761 7724 0 289 51 0 0 chrX 58022720 58022759 -104577171 - MADE1 DNA Mariner 0 80 42 4217 83 5 0 chrX 58023233 58023813 -104576117 + L1PB1 LINE L1 5569 6151 0 2074 118 7 3 chrX 58023844 58024140 -104575790 - AluSx SINE Alu -14 298 2 446 138 0 0 chrX 58025408 58025488 -104574442 + L1MA6 LINE L1 6220 6299 -1 189 298 70 0 chrX 58026225 58026282 -104573648 - MIR SINE MIR -6 256 196 276 308 128 23 chrX 58026515 58026648 -104573282 - L2 LINE L2 -4 3309 3163 4869 155 33 11 chrX 58026788 58027858 -104572072 - L1PA15 LINE L1 -6 6159 5058 318 109 0 0 chrX 58027859 58027905 -104572025 + LTR19A LTR ERV1 1 46 -440 7509 119 14 2 chrX 58027919 58029900 -104570030 - L1PA8 LINE L1 -1 6171 4178 5915 125 9 19 chrX 58029901 58030926 -104569004 - L1PA8 LINE L1 -2061 4085 3072 13263 120 11 1 chrX 58030935 58033782 -104566148 - L1PA7 LINE L1 0 6469 3595 6447 115 10 10 chrX 58033782 58034771 -104565159 - L1PA7 LINE L1 -5472 989 1 539 191 127 8 chrX 58034773 58034899 -104565031 - Tigger4(Zombi) DNA MER2_type -2590 141 1 4906 155 29 22 chrX 58035015 58035935 -104563995 + L1PA8 LINE L1 6 932 -5529 2452 129 2 17 chrX 58036062 58036465 -104563465 + L1PA8 LINE L1 930 1326 -5135 * 9973 123 16 0 chrX 58036460 58038188 -104561742 + L1PA8 LINE L1 3987 5744 -725 36373 88 8 2 chrX 58038188 58044302 -104555628 + L1PA5 LINE L1 5 6154 0 5235 99 1 21 chrX 58044310 58045084 -104554846 + L1PA8 LINE L1 5728 6486 -1 309 241 105 38 chrX 58045149 58045282 -104554648 + L1ME4a LINE L1 5968 6109 -12 1580 245 45 84 chrX 58045623 58046334 -104553596 + LTR8 LTR ERV1 1 683 -8 22 35 0 0 chrX 58046370 58046399 -104553531 + AT_rich Low_complexity Low_complexity 1 29 0 40694 50 3 2 chrX 58046425 58052572 -104547358 + L1PA3 LINE L1 2 6152 -3 467 289 100 15 chrX 58052630 58052969 -104546961 + L1M4 LINE L1 2110 2477 -3669 1728 167 3 10 chrX 58053074 58053387 -104546543 + AluJb SINE Alu 9 319 0 1492 208 0 42 chrX 58053531 58053666 -104546264 + AluJo SINE Alu 1 140 -172 2110 125 0 13 chrX 58053666 58053978 -104545952 + AluSx SINE Alu 1 308 -4 1492 208 0 42 chrX 58053978 58054154 -104545776 + AluJo SINE Alu 140 299 -13 668 244 96 78 chrX 58054437 58054477 -104545453 + L1M4 LINE L1 3591 3629 -2517 1725 164 3 23 chrX 58054477 58054776 -104545154 - AluJb SINE Alu -19 293 1 668 244 96 78 chrX 58054776 58055089 -104544841 + L1M4 LINE L1 3629 3956 -2190 1620 183 28 7 chrX 58055089 58055379 -104544551 + AluJb SINE Alu 1 296 -16 668 244 96 78 chrX 58055379 58055474 -104544456 + L1M4 LINE L1 3956 4048 -2098 1300 165 30 22 chrX 58055476 58055743 -104544187 - AluJo SINE Alu -6 306 38 28 0 0 0 chrX 58056078 58056106 -104543824 + AT_rich Low_complexity Low_complexity 1 28 0 14716 39 6 4 chrX 58056106 58058696 -104541234 - L1PA3 LINE L1 -3 6152 3559 2310 92 19 6 chrX 58059654 58059979 -104539951 + L1PA8A LINE L1 5801 6129 -2 2041 107 11 7 chrX 58060529 58060862 -104539068 - AluY SINE Alu 0 335 2 297 219 70 62 chrX 58060930 58061058 -104538872 - MIR SINE MIR -74 188 60 5676 253 56 61 chrX 58061448 58063377 -104536553 + L1MA8 LINE L1 1 1920 -5110 371 261 0 0 chrX 58063367 58063478 -104536452 + L1MA8 LINE L1 3724 3834 -3272 * 692 259 5 10 chrX 58063492 58063685 -104536245 + L1PB1 LINE L1 6 197 -6666 * 7830 195 70 19 chrX 58063682 58066660 -104533270 + L1PB1 LINE L1 1392 4760 -2107 1785 160 0 26 chrX 58066660 58066966 -104532964 + AluSx SINE Alu 1 298 -14 7830 195 70 19 chrX 58066966 58069186 -104530744 + L1PB1 LINE L1 4760 6866 -1 23 0 0 0 chrX 58069186 58069209 -104530721 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chrX 58069339 58069374 -104530556 + AT_rich Low_complexity Low_complexity 1 35 0 10101 189 25 13 chrX 58069374 58072592 -104527338 + L1MA8 LINE L1 3820 7080 -171 2019 125 0 3 chrX 58072592 58072881 -104527049 + AluSx SINE Alu 11 298 -14 24 53 0 0 chrX 58072949 58072987 -104526943 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chrX 58073020 58073043 -104526887 + AT_rich Low_complexity Low_complexity 1 23 0 2789 248 77 22 chrX 58073826 58075270 -104524660 + L1MDa LINE L1 21 1769 -4771 942 179 111 28 chrX 58075278 58075602 -104524328 + L1MDa LINE L1 1983 2333 -4207 1849 111 49 8 chrX 58075617 58075999 -104523931 + LTR7 LTR ERV1 1 450 0 1801 197 42 26 chrX 58075999 58076451 -104523479 + HERVH LTR ERV1 1 459 -7254 15713 139 8 22 chrX 58076509 58079338 -104520592 + HERVH LTR ERV1 800 3587 -4126 6677 131 5 4 chrX 58079341 58080584 -104519346 + HERVH LTR ERV1 3840 5286 -1805 2664 111 7 11 chrX 58080588 58081021 -104518909 + HERVH LTR ERV1 7283 7713 0 1981 104 33 8 chrX 58081021 58081411 -104518519 + LTR7 LTR ERV1 1 450 0 306 125 0 0 chrX 58081429 58081477 -104518453 + (TA)n Simple_repeat Simple_repeat 1 48 0 2068 229 42 9 chrX 58081478 58082471 -104517459 + L1MDa LINE L1 2344 3372 -3168 445 35 0 0 chrX 58082471 58082528 -104517402 + L1MA2 LINE L1 6199 6255 -49 953 185 15 0 chrX 58082540 58082735 -104517195 + L1PBa LINE L1 3 200 -6663 10620 181 66 13 chrX 58082735 58087215 -104512715 + L1PBa LINE L1 634 5352 -1510 5475 164 19 100 chrX 58087222 58088520 -104511410 + L1PB1 LINE L1 3593 4994 -1157 6018 53 1 0 chrX 58087715 58088519 -104511411 - L1PA4 LINE L1 -3548 2598 1794 21538 52 7 0 chrX 58088520 58092060 -104507870 + L1PA4 LINE L1 2608 6155 0 9969 67 7 1 chrX 58092063 58094145 -104505785 + L1PA5 LINE L1 4068 6154 0 5475 164 19 100 chrX 58094145 58095653 -104504277 + L1PB1 LINE L1 4996 6151 0 320 111 0 0 chrX 58095664 58095718 -104504212 + L1MA2 LINE L1 6247 6300 -4 207 0 0 0 chrX 58095766 58095789 -104504141 + (A)n Simple_repeat Simple_repeat 1 23 0 346 327 41 28 chrX 58095789 58096177 -104503753 + L1M4 LINE L1 2963 3355 -2791 310 29 0 0 chrX 58146315 58146350 -104453580 + L1PA4 LINE L1 6107 6141 -14 464 304 7 15 chrX 58146384 58146519 -104453411 + MER5B DNA MER1_type 5 138 -40 1100 222 66 40 chrX 58146522 58146946 -104452984 - L1MC5 LINE L1 -32 7929 7495 625 256 27 58 chrX 58146950 58147173 -104452757 + MLT1D LTR MaLR 2 217 -288 264 233 0 0 chrX 58147249 58147322 -104452608 + (CA)n Simple_repeat Simple_repeat 2 74 0 342 275 58 47 chrX 58147359 58147530 -104452400 - MIR SINE MIR -50 212 40 362 250 227 19 chrX 58147717 58147933 -104451997 - MIR SINE MIR 0 262 2 220 291 12 35 chrX 58148876 58148962 -104450968 + MIR SINE MIR 34 117 -91 797 21 11 88 chrX 58148965 58149352 -104450578 + (TA)n Simple_repeat Simple_repeat 1 357 0 2145 110 0 17 chrX 58149352 58149642 -104450288 - AluSx SINE Alu -27 285 1 1410 59 0 0 chrX 58149705 58149874 -104450056 - AluY SINE Alu -17 294 126 2568 46 0 0 chrX 58149876 58150182 -104449748 - AluY SINE Alu -5 306 1 729 177 9 0 chrX 58150712 58150825 -104449105 + MER81 DNA DNA 1 114 0 298 232 121 0 chrX 58151314 58151413 -104448517 - L1ME2 LINE L1 -10 6154 6044 2438 207 58 20 chrX 58151419 58151955 -104447975 + MER68 LTR ERV1 1 556 -6 1080 198 36 40 chrX 58151962 58152240 -104447690 - L1ME2 LINE L1 -125 6039 5763 2610 102 3 11 chrX 58152240 58152593 -104447337 - L1PB1 LINE L1 0 6151 5802 1396 99 25 10 chrX 58152593 58152795 -104447135 - THE1B LTR MaLR -159 205 1 10279 129 52 3 chrX 58152795 58154301 -104445629 - THE1B-int LTR MaLR 0 1580 1 2789 112 0 6 chrX 58154301 58154667 -104445263 - THE1B LTR MaLR 0 364 1 10919 177 91 24 chrX 58154675 58155152 -104444778 - L1PBa LINE L1 -1538 5324 4880 2095 150 0 6 chrX 58155152 58155465 -104444465 - AluSx SINE Alu -1 311 1 10919 177 91 24 chrX 58155465 58159430 -104440500 - L1PBa LINE L1 -1982 4880 591 683 298 15 49 chrX 58160262 58160527 -104439403 + MIR SINE MIR 7 262 0 314 346 104 30 chrX 58160536 58161036 -104438894 - L2 LINE L2 -1036 2278 1742 263 228 25 38 chrX 58162273 58162352 -104437578 - L2 LINE L2 -15 3298 3221 899 287 0 5 chrX 58162477 58162686 -104437244 - MIR SINE MIR -53 209 2 534 269 40 34 chrX 58162786 58162961 -104436969 - MIR SINE MIR -82 180 5 234 0 0 0 chrX 58163283 58163309 -104436621 + (CAT)n Simple_repeat Simple_repeat 3 28 0 27324 111 9 15 chrX 58163672 58169442 -104430488 + L1PA7 LINE L1 717 6466 -3 334 214 143 52 chrX 58169530 58169653 -104430277 + MIR SINE MIR 39 143 -65 390 299 45 19 chrX 58169898 58170023 -104429907 + MIR SINE MIR 23 154 -108 406 169 39 0 chrX 58170023 58170100 -104429830 - MADE1 DNA Mariner 0 80 1 390 299 45 19 chrX 58170100 58170131 -104429799 + MIR SINE MIR 154 183 -79 596 219 104 45 chrX 58170133 58170334 -104429596 + MLT1G1 LTR MaLR 1 213 -336 432 232 80 24 chrX 58170344 58170469 -104429461 - MIR SINE MIR -108 154 23 620 224 154 31 chrX 58170749 58170977 -104428953 + MLT1G1 LTR MaLR 300 595 0 188 211 26 0 chrX 58171410 58171448 -104428482 - L2 LINE L2 -16 3297 3259 * 453 121 0 72 chrX 58171435 58171518 -104428412 - MIR SINE MIR -80 182 106 548 341 29 16 chrX 58171722 58171968 -104427962 + MIR SINE MIR 13 261 -1 1266 203 66 87 chrX 58173773 58173887 -104426043 + LTR37B LTR ERV1 7 122 -346 621 236 33 107 chrX 58173887 58174129 -104425801 - MER58A DNA MER1_type 0 224 1 1266 203 66 87 chrX 58174129 58174486 -104425444 + LTR37B LTR ERV1 122 468 0 398 357 141 12 chrX 58175105 58175360 -104424570 - L3 LINE CR1 -13 1564 1277 324 256 12 47 chrX 58175576 58175662 -104424268 - MIR SINE MIR -103 105 23 229 213 0 0 chrX 58175663 58175710 -104424220 + (TATG)n Simple_repeat Simple_repeat 4 50 0 442 345 83 9 chrX 58175988 58176217 -104423713 + MIR SINE MIR 5 250 -12 505 305 52 11 chrX 58176230 58176404 -104423526 - MIR3 SINE MIR -13 195 15 945 188 44 0 chrX 58176410 58176591 -104423339 + MER5A DNA MER1_type 1 189 0 410 326 14 7 chrX 58176883 58177030 -104422900 - L3 LINE CR1 -19 1558 1411 506 281 94 6 chrX 58177197 58177368 -104422562 - MIR3 SINE MIR 0 208 23 1130 151 77 182 chrX 58177805 58178129 -104421801 + AluJo SINE Alu 1 290 -12 520 240 51 31 chrX 58178156 58178366 -104421564 + MER20B DNA MER1_type 1 218 -1 1138 163 25 0 chrX 58178371 58178573 -104421357 + MER3 DNA MER1_type 2 208 -1 357 242 99 87 chrX 58179396 58179557 -104420373 - MIR SINE MIR -98 164 2 428 236 9 19 chrX 58179759 58179865 -104420065 - MIR SINE MIR -65 143 39 238 324 40 14 chrX 58179884 58179958 -104419972 + MIR SINE MIR 23 98 -164 738 255 60 130 chrX 58180030 58180625 -104419305 - L2 LINE L2 -4 3268 2712 635 261 0 13 chrX 58180630 58180787 -104419143 + MIR SINE MIR 100 254 -8 833 198 13 0 chrX 58180939 58181096 -104418834 + L1PB4 LINE L1 5995 6153 -3 686 247 6 6 chrX 58181828 58181986 -104417944 + MER97b DNA MER1_type? 2 159 -894 2048 181 79 24 chrX 58181988 58182397 -104417533 - L1MC/D LINE L1 -604 5755 5295 1135 205 48 26 chrX 58182397 58182626 -104417304 - MER8 DNA MER2_type -3 236 3 2048 181 79 24 chrX 58182626 58182811 -104417119 - L1MC/D LINE L1 -1064 5295 5122 6926 59 11 0 chrX 58182812 58184216 -104415714 - L1PA7 LINE L1 -2 6152 4737 469 135 0 11 chrX 58184217 58184306 -104415624 - L1P LINE L1 -745 5463 5376 1088 91 23 0 chrX 58184310 58184486 -104415444 + (TTC)n Simple_repeat Simple_repeat 1 180 0 366 156 0 0 chrX 58184486 58184550 -104415380 + CT-rich Low_complexity Low_complexity 3 66 0 1730 197 3 16 chrX 58184554 58184869 -104415061 - AluSx SINE Alu -1 311 1 12904 195 31 7 chrX 58184869 58189770 -104410160 - L1PBb LINE L1 -815 5388 367 534 218 57 0 chrX 58189775 58189899 -104410031 - L1PBa LINE L1 -5216 1647 1517 590 293 51 12 chrX 58189962 58190218 -104409712 - L1M4 LINE L1 -2614 3532 3267 27409 125 18 64 chrX 58190226 58195701 -104404229 + L1P LINE L1 12 5233 -913 22351 133 14 126 chrX 58195705 58199805 -104400125 - L1P3 LINE L1 -620 5534 977 1901 70 0 12 chrX 58199805 58200047 -104399883 - AluY SINE Alu 0 311 73 22351 133 14 126 chrX 58200047 58201807 -104398123 - L1P3 LINE L1 -5177 977 434 205 50 25 25 chrX 58201807 58201847 -104398083 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 22351 133 14 126 chrX 58201847 58202229 -104397701 - L1P3 LINE L1 -5720 434 11 297 0 0 0 chrX 58202258 58202291 -104397639 + (CA)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chrX 58202361 58202384 -104397546 + (TAGA)n Simple_repeat Simple_repeat 3 25 0 1552 246 51 16 chrX 58202477 58203120 -104396810 - L1M4 LINE L1 -2952 3194 2529 429 145 40 40 chrX 58203122 58203246 -104396684 - Tigger3b DNA MER2_type -424 807 684 2415 151 21 14 chrX 58203246 58203677 -104396253 + MER57B LTR ERV1 1 434 0 3292 167 7 15 chrX 58203677 58204277 -104395653 + MER57B-int LTR ERV1 1 595 -6942 * 5931 131 18 5 chrX 58204273 58205316 -104394614 + MER57B-int LTR ERV1 3829 4885 -2652 8486 57 1 0 chrX 58205316 58206473 -104393457 - L1P LINE L1 -2787 3359 2202 7357 34 1 0 chrX 58206487 58208093 -104391837 - L1PA3 LINE L1 -5 6150 4538 8820 47 3 2 chrX 58208093 58209995 -104389935 + L1PA4 LINE L1 4239 6142 -13 468 106 0 0 chrX 58209995 58210080 -104389850 + (TA)n Simple_repeat Simple_repeat 2 86 0 14547 111 19 4 chrX 58210080 58212306 -104387624 + MER57B-int LTR ERV1 4887 7147 -390 724 102 23 31 chrX 58212307 58212435 -104387495 + LTR54B LTR ERV1 5 131 -367 1655 56 121 0 chrX 58212435 58212666 -104387264 + MER57B-int LTR ERV1 7279 7537 0 2724 129 19 2 chrX 58212666 58213093 -104386837 + MER57B LTR ERV1 1 434 0 3439 123 81 26 chrX 58213093 58213254 -104386676 - Tigger3b DNA MER2_type -2341 687 536 1915 174 0 6 chrX 58213254 58213565 -104386365 + AluJo SINE Alu 1 309 -3 3439 123 81 26 chrX 58213565 58214054 -104385876 - Tigger3b DNA MER2_type -2492 536 1 219 204 0 0 chrX 58214058 58214107 -104385823 + (TG)n Simple_repeat Simple_repeat 2 50 0 272 315 31 8 chrX 58214344 58214474 -104385456 - L1ME LINE L1 -478 5643 5511 747 303 42 4 chrX 58214595 58214836 -104385094 + MLT1J LTR MaLR 20 269 -242 541 195 40 11 chrX 58215062 58215236 -104384694 - HsTC2 DNA Tc2 -3 1895 1717 658 249 0 73 chrX 58215247 58215480 -104384450 - HsTC2 DNA Tc2 -1590 308 93 805 278 24 27 chrX 58215613 58215908 -104384022 + L1MEc LINE L1 361 654 -6067 386 182 0 64 chrX 58216314 58216424 -104383506 + L1MEc LINE L1 1072 1174 -5547 1306 264 44 4 chrX 58216434 58216892 -104383038 - L1MEc LINE L1 -3291 2924 2449 582 262 96 19 chrX 58216878 58217241 -104382689 - L1MEc LINE L1 -5128 1268 878 * 5747 194 66 2 chrX 58217242 58218652 -104381278 + L1MB1 LINE L1 3120 4619 -1527 2451 230 12 1 chrX 58218696 58219347 -104380583 + L1MB1 LINE L1 4726 5383 -763 22 0 0 0 chrX 58219347 58219369 -104380561 + AT_rich Low_complexity Low_complexity 1 22 0 2789 147 67 0 chrX 58219369 58219879 -104380051 + L1MB1 LINE L1 5621 6164 -4 390 42 0 0 chrX 58219879 58219927 -104380003 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 322 250 70 41 chrX 58219940 58220112 -104379818 + L1MEc LINE L1 1533 1709 -4831 791 281 33 6 chrX 58220166 58220501 -104379429 + L1MEc LINE L1 1860 2203 -4518 852 203 46 0 chrX 58220512 58220709 -104379221 + L1MEc LINE L1 2257 2462 -4259 364 149 0 40 chrX 58220706 58220780 -104379150 + L1MD3 LINE L1 7732 7802 -193 * 1879 214 99 21 chrX 58220783 58221330 -104378600 + L1M4 LINE L1 4566 5169 -977 1710 179 13 13 chrX 58221330 58221642 -104378288 + AluJo SINE Alu 1 312 0 1879 214 99 21 chrX 58221642 58221717 -104378213 + L1M4 LINE L1 5169 5237 -909 1274 208 14 27 chrX 58221818 58222112 -104377818 + AluJo SINE Alu 23 312 0 3255 227 21 6 chrX 58222123 58223101 -104376829 + L1MB7 LINE L1 5172 6164 -20 189 0 0 0 chrX 58223301 58223322 -104376608 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 243 324 14 0 chrX 58223824 58223898 -104376032 - MIR3 SINE MIR -52 156 82 190 250 0 19 chrX 58224175 58224227 -104375703 - L2 LINE L2 -1 3312 3262 595 263 37 19 chrX 58224262 58224480 -104375450 - MIR SINE MIR 0 262 42 1289 183 25 113 chrX 58224914 58225314 -104374616 - MLT1A1 LTR MaLR 0 365 1 626 264 104 40 chrX 58225649 58225717 -104374213 - L2 LINE L2 -747 2567 2505 958 202 5 5 chrX 58225717 58225905 -104374025 + MER5A DNA MER1_type 1 188 -1 626 264 104 40 chrX 58225905 58226135 -104373795 - L2 LINE L2 -809 2505 2250 519 168 0 0 chrX 58226601 58226696 -104373234 + GA-rich Low_complexity Low_complexity 1 95 0 321 321 95 41 chrX 58226788 58227031 -104372899 - L2 LINE L2 -206 3066 2811 527 251 27 23 chrX 58227112 58227331 -104372599 + MER112 DNA MER1_type 35 254 -6 363 340 99 46 chrX 58227340 58227945 -104371985 - L2 LINE L2 -556 2758 2122 464 200 58 25 chrX 58228764 58228884 -104371046 + MIR SINE MIR 74 197 -65 1630 214 126 30 chrX 58229122 58231015 -104368915 - L1MDa LINE L1 -3691 2849 601 234 0 0 0 chrX 58231115 58231141 -104368789 + (A)n Simple_repeat Simple_repeat 1 26 0 327 253 153 41 chrX 58231226 58231396 -104368534 + MIR SINE MIR 68 256 -6 182 305 34 85 chrX 58233154 58233272 -104366658 - L2 LINE L2 0 3272 3161 2038 111 7 14 chrX 58233646 58233943 -104365987 - AluSx SINE Alu -17 295 1 311 323 30 8 chrX 58234218 58234351 -104365579 + MIR SINE MIR 114 249 -13 185 313 83 42 chrX 58234394 58234490 -104365440 - L3b LINE CR1 -121 1462 1363 376 318 69 26 chrX 58234645 58234834 -104365096 - MIR SINE MIR -18 244 48 22 0 0 0 chrX 58234878 58234900 -104365030 + AT_rich Low_complexity Low_complexity 1 22 0 391 202 128 9 chrX 58235240 58235349 -104364581 - MIR SINE MIR -68 140 19 383 354 8 23 chrX 58236305 58236435 -104363495 - L2 LINE L2 -5 3267 3140 1304 191 0 70 chrX 58236663 58236936 -104362994 - MIR SINE MIR -6 256 3 1537 282 66 28 chrX 58236943 58237755 -104362175 - L2 LINE L2 -89 3224 2384 238 253 202 73 chrX 58237751 58237929 -104362001 - MIR3 SINE MIR -7 201 1 * 189 282 12 71 chrX 58238513 58238598 -104361332 + MIR SINE MIR 162 241 -21 537 272 91 16 chrX 58239238 58239481 -104360449 + MIR SINE MIR 2 262 0 1314 190 7 11 chrX 58240093 58240372 -104359558 - L1PB4 LINE L1 -14 6142 5865 2537 191 22 73 chrX 58240372 58241067 -104358863 - LTR8 LTR ERV1 -2 689 31 3073 132 38 2 chrX 58241125 58241656 -104358274 - L1PB4 LINE L1 -286 5870 5321 253 370 71 8 chrX 58241656 58241783 -104358147 - L2 LINE L2 -51 3221 3087 4736 183 46 46 chrX 58242969 58243060 -104356870 + L1MD1 LINE L1 4549 4638 -1604 2526 65 0 3 chrX 58243060 58243369 -104356561 - AluY SINE Alu -3 308 1 4736 183 46 46 chrX 58243369 58243875 -104356055 + L1MD1 LINE L1 4638 5142 -1100 8103 34 17 0 chrX 58243875 58245638 -104354292 - L1PA4 LINE L1 0 6155 4376 4736 183 46 46 chrX 58245638 58246734 -104353196 + L1MD1 LINE L1 5142 6231 -11 427 224 10 10 chrX 58246743 58246841 -104353089 + MER96B DNA MER1_type? 320 417 0 443 228 18 90 chrX 58247112 58247279 -104352651 + MIR SINE MIR 10 164 -98 658 223 0 0 chrX 58247574 58247704 -104352226 + FLAM_A SINE Alu 4 133 0 2616 169 48 24 chrX 58247744 58248331 -104351599 + L1MB7 LINE L1 5573 6173 -11 694 146 111 18 chrX 58249208 58249379 -104350551 + MER53 DNA DNA 1 187 -2 1341 226 102 6 chrX 58249509 58249841 -104350089 + MLT1A1 LTR MaLR 1 364 -1 519 299 113 0 chrX 58249929 58250123 -104349807 - MIR SINE MIR 0 262 47 879 236 28 4 chrX 58250277 58250531 -104349399 - MIR SINE MIR 0 262 3 22 0 0 0 chrX 58250574 58250596 -104349334 + AT_rich Low_complexity Low_complexity 1 22 0 4673 238 57 31 chrX 58251279 58251509 -104348421 + L1M4 LINE L1 1 224 -6420 1861 151 24 0 chrX 58251509 58251801 -104348129 - AluJb SINE Alu -13 299 1 4673 238 57 31 chrX 58251801 58253756 -104346174 + L1M4 LINE L1 224 2412 -4232 1450 221 0 33 chrX 58253756 58254059 -104345871 - AluJb SINE Alu -19 293 1 4673 238 57 31 chrX 58254059 58254663 -104345267 + L1M4 LINE L1 2412 2999 -3645 1524 228 55 51 chrX 58254672 58255278 -104344652 - L1M4 LINE L1 -3404 2742 2135 11718 153 17 119 chrX 58255288 58258456 -104341474 + L1P LINE L1 12 2855 -3291 7532 141 16 7 chrX 58258641 58261007 -104338923 + L1MA2 LINE L1 1827 4170 -3553 3038 30 0 33 chrX 58261007 58261361 -104338569 + L1PA4 LINE L1 5805 6153 -2 7532 141 16 7 chrX 58261361 58262442 -104337488 + L1MA2 LINE L1 4170 7675 -48 21131 68 3 9 chrX 58262448 58268443 -104331487 + L1PA5 LINE L1 2 6153 -1 768 163 48 27 chrX 58268470 58268617 -104331313 + MER30 DNA MER1_type 80 229 -1 1793 175 0 3 chrX 58268666 58268963 -104330967 - AluJb SINE Alu -16 296 1 1676 161 0 67 chrX 58269078 58269408 -104330522 + AluJo SINE Alu 1 308 -4 1079 282 73 22 chrX 58270343 58270751 -104329179 - MLT1J2 LTR MaLR -7 443 15 2691 174 106 6 chrX 58270856 58271396 -104328534 + L1MB5 LINE L1 5581 6174 0 381 136 0 0 chrX 58271676 58271735 -104328195 + L1MA2 LINE L1 6246 6304 0 10487 40 0 0 chrX 58272054 58273298 -104326632 + L1P LINE L1 3764 5007 -1139 5570 41 17 5 chrX 58273398 58274054 -104325876 + SVA Other Other 721 1384 -2 275 93 111 0 chrX 58274056 58274110 -104325820 - MER53 DNA DNA -84 105 46 17679 103 2 1 chrX 58274117 58274577 -104325353 + L1PA5 LINE L1 2840 3298 -2856 2282 108 0 0 chrX 58274577 58274873 -104325057 + AluY SINE Alu 1 296 -15 17679 103 2 1 chrX 58274873 58277702 -104322228 + L1PA5 LINE L1 3298 6153 -1 468 193 84 0 chrX 58277702 58277785 -104322145 - Tigger3(Golem) DNA MER2_type -2939 90 1 468 232 116 25 chrX 58277787 58277985 -104321945 - HAL1b LINE L1 -421 927 712 545 205 26 26 chrX 58277994 58278111 -104321819 + L2 LINE L2 3186 3302 -11 3044 149 51 35 chrX 58278125 58278695 -104321235 - L1M4c LINE L1 -5448 936 358 6038 159 10 12 chrX 58278695 58280094 -104319836 + L1MA4 LINE L1 4900 6294 -6 2029 164 6 20 chrX 58280119 58280466 -104319464 - L1M4c LINE L1 -6019 365 24 2365 208 13 24 chrX 58280466 58280923 -104319007 + LTR40a LTR ERVL 68 519 0 595 290 70 19 chrX 58282113 58282327 -104317603 - MIR SINE MIR -34 228 4 2320 85 0 7 chrX 58282684 58282979 -104316951 - AluSc SINE Alu 0 309 17 1153 91 19 0 chrX 58283082 58283277 -104316653 + AluSg/x SINE Alu 156 353 0 228 206 151 0 chrX 58283643 58283716 -104316214 - MLT1I LTR MaLR -8 401 318 412 234 38 120 chrX 58283805 58284014 -104315916 - MLT1J LTR MaLR -212 299 108 1994 267 56 30 chrX 58284277 58284850 -104315080 + MLT1E LTR MaLR 1 588 -5 473 272 83 39 chrX 58284972 58285152 -104314778 + L3 LINE CR1 1370 1557 -20 471 228 18 120 chrX 58285381 58285548 -104314382 + MER5A DNA MER1_type 4 153 -36 446 298 122 11 chrX 58285554 58285742 -104314188 + MIR SINE MIR 48 256 -6 213 185 0 37 chrX 58286368 58286422 -104313508 - L2 LINE L2 0 3313 3262 357 274 30 54 chrX 58287080 58287248 -104312682 + MLT1J LTR MaLR 1 164 -347 259 284 23 11 chrX 58287221 58287309 -104312621 + MLT1L LTR MaLR 201 289 -326 * 249 0 0 0 chrX 58288940 58288968 -104310962 - tRNA-Gly-GGG tRNA tRNA -46 28 1 1020 174 47 8 chrX 58288974 58289209 -104310721 + L1PA16 LINE L1 5155 5398 -748 24474 118 61 78 chrX 58289219 58293909 -104306021 + L1PA7 LINE L1 12 4621 -1525 2066 96 0 0 chrX 58293900 58294191 -104305739 - L1P LINE L1 -1253 4893 4603 * 2017 83 0 0 chrX 58294191 58294445 -104305485 - L1P LINE L1 -1847 4299 4046 6706 65 1 4 chrX 58294445 58295248 -104304682 + L1PA7 LINE L1 5347 6149 -5 3957 144 25 25 chrX 58295248 58295542 -104304388 + L1PA16 LINE L1 5393 5686 -480 192 40 0 0 chrX 58295542 58295567 -104304363 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3957 144 25 25 chrX 58295567 58295939 -104303991 + L1PA16 LINE L1 5685 6059 -107 336 176 0 0 chrX 58295942 58296010 -104303920 + L1PA16 LINE L1 6099 6166 0 1215 173 13 9 chrX 58296119 58296344 -104303586 - AluJo SINE Alu -1 311 86 2442 64 3 0 chrX 58297410 58297706 -104302224 + AluY SINE Alu 1 297 -14 237 370 65 48 chrX 58298177 58298590 -104301340 - L2 LINE L2 -458 2856 2437 252 59 0 0 chrX 58299137 58299171 -104300759 + (CTAG)n Simple_repeat Simple_repeat 3 36 0 761 175 0 8 chrX 58299229 58299355 -104300575 - L2 LINE L2 0 3313 3189 2026 126 28 0 chrX 58299518 58299803 -104300127 - AluSg SINE Alu -17 293 1 918 335 102 35 chrX 58299864 58300911 -104299019 - L2 LINE L2 -943 2371 1255 1865 151 26 10 chrX 58301090 58301394 -104298536 - AluJo SINE Alu -3 309 1 1984 195 77 39 chrX 58301633 58302100 -104297830 + MER31A LTR ERV1 1 485 0 278 320 45 81 chrX 58302130 58302430 -104297500 + L2 LINE L2 2776 3062 -210 662 246 118 81 chrX 58302541 58302887 -104297043 + LTR68 LTR ERV1 240 598 -142 232 268 87 22 chrX 58302919 58303057 -104296873 + MER67C LTR ERV1 546 692 -18 441 54 0 0 chrX 58303704 58303760 -104296170 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2076 131 3 0 chrX 58303760 58304058 -104295872 - AluSx SINE Alu -13 299 1 22 0 0 0 chrX 58304143 58304165 -104295765 + AT_rich Low_complexity Low_complexity 1 22 0 706 239 39 85 chrX 58304614 58304788 -104295142 - MIR SINE MIR 0 262 102 2303 100 7 0 chrX 58304788 58305089 -104294841 + AluSx SINE Alu 1 303 -9 706 239 39 85 chrX 58305089 58305174 -104294756 - MIR SINE MIR -160 102 15 246 302 103 17 chrX 58305172 58305288 -104294642 - L2 LINE L2 -582 2732 2607 * 194 308 66 22 chrX 58305321 58305412 -104294518 - L2 LINE L2 -562 2752 2658 307 290 179 60 chrX 58305618 58306004 -104293926 - L1M2 LINE L1 -5891 958 527 27 0 0 0 chrX 58306803 58306830 -104293100 + AT_rich Low_complexity Low_complexity 1 27 0 243 279 0 15 chrX 58509225 58509293 -104090637 + (CA)n Simple_repeat Simple_repeat 1 67 0 354 227 0 0 chrX 58509293 58509381 -104090549 - L1MC4 LINE L1 -1339 6703 6616 334 221 47 0 chrX 58509305 58509391 -104090539 + L1MC4 LINE L1 6614 6703 -1339 * 310 200 14 14 chrX 58509396 58509466 -104090464 - L1MCa LINE L1 -4362 2064 1995 1145 236 8 22 chrX 58509466 58509986 -104089944 + MER74A LTR ERVL 11 558 0 3083 258 62 58 chrX 58510116 58510166 -104089764 - L1MC4 LINE L1 -254 7788 7740 823 249 53 0 chrX 58510166 58510375 -104089555 + MER58A DNA MER1_type 2 221 -3 3083 258 62 58 chrX 58510375 58511484 -104088446 - L1MC4 LINE L1 -302 7740 6620 606 41 41 0 chrX 58511484 58511581 -104088349 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 3083 258 62 58 chrX 58511581 58511724 -104088206 - L1MC4 LINE L1 -1422 6620 6479 313 300 0 0 chrX 58511731 58511811 -104088119 - L1MC4a LINE L1 -1370 6438 6359 4119 220 15 1 chrX 58511819 58513006 -104086924 - L1MB1 LINE L1 0 6168 4964 1262 277 28 71 chrX 58512998 58513309 -104086621 + L1 LINE L1 2400 2672 -3474 * 6124 90 16 14 chrX 58513309 58515167 -104084763 - L1PA11 LINE L1 -2 6172 4302 1262 277 28 71 chrX 58515167 58515473 -104084457 + L1 LINE L1 2672 2990 -3156 9654 238 78 29 chrX 58515485 58516306 -104083624 - L1PA16 LINE L1 -9 7595 6815 3833 29 0 0 chrX 58516306 58516753 -104083177 - L1PA5 LINE L1 -4 6150 5704 9654 238 78 29 chrX 58516753 58518673 -104081257 - L1PA16 LINE L1 -789 6815 4990 12454 34 1 3 chrX 58518673 58520963 -104078967 - L1PA4 LINE L1 0 6155 3868 9654 238 78 29 chrX 58520963 58523009 -104076921 - L1PA16 LINE L1 -2614 4990 2474 8534 42 0 2 chrX 58523009 58524840 -104075090 - L1PA4 LINE L1 -3 6152 4324 9654 238 78 29 chrX 58524840 58525147 -104074783 - L1PA16 LINE L1 -5130 2474 2183 470 361 4 18 chrX 58525308 58525535 -104074395 - L1PA16 LINE L1 -6563 1011 788 8447 245 45 21 chrX 58525540 58527889 -104072041 - L1M4 LINE L1 -3377 3729 639 828 30 0 0 chrX 58527889 58527988 -104071942 + (TC)n Simple_repeat Simple_repeat 2 100 0 8447 245 45 21 chrX 58527988 58528473 -104071457 - L1M4 LINE L1 -6467 639 167 3846 163 62 20 chrX 58528473 58529331 -104070599 - MER41B-int LTR ERV1 -4668 1930 1037 3899 137 13 5 chrX 58529331 58529961 -104069969 - MER41B LTR ERV1 0 635 1 1855 83 36 0 chrX 58529961 58530213 -104069717 - MER41B-int LTR ERV1 0 5946 5686 1679 86 39 0 chrX 58530209 58530441 -104069489 - MER41B-int LTR ERV1 -20 5926 5686 * 11487 114 12 19 chrX 58530437 58532212 -104067718 - MER41B-int LTR ERV1 -20 5926 4164 5795 150 39 39 chrX 58532227 58533366 -104066564 - MER41B-int LTR ERV1 -3618 3919 2781 702 151 0 17 chrX 58533362 58533481 -104066449 - MER41B-int LTR ERV1 -3929 2017 1901 * 1832 149 51 64 chrX 58533483 58533858 -104066072 - MER41B-int LTR ERV1 -4185 1761 1392 4226 157 12 9 chrX 58533859 58534547 -104065383 - MER41B-int LTR ERV1 -5256 690 1 3765 147 9 9 chrX 58534547 58535182 -104064748 - MER41B LTR ERV1 0 635 1 3970 146 117 68 chrX 58535182 58536174 -104063756 - MER4A-int LTR ERV1 -5558 1040 1 1690 127 182 20 chrX 58536177 58536523 -104063407 - MER4A LTR ERV1 0 664 263 609 163 0 0 chrX 58536523 58536621 -104063309 - MER4A LTR ERV1 -566 98 1 2896 136 25 41 chrX 58536621 58537178 -104062752 + MER4A-int LTR ERV1 6044 6591 -7 3329 128 16 82 chrX 58537185 58537828 -104062102 + MER4A LTR ERV1 1 600 0 2874 10 0 0 chrX 58538226 58538537 -104061393 - AluY SINE Alu 0 311 1 782 262 50 25 chrX 58539335 58539614 -104060316 - LTR55 LTR ERV -15 533 248 424 218 23 0 chrX 58539609 58539696 -104060234 - LTR55 LTR ERV -413 135 47 * 4005 87 9 13 chrX 58539696 58540368 -104059562 + L1PA8A LINE L1 5276 6128 -3 367 98 0 0 chrX 58540402 58540453 -104059477 - LTR55 LTR ERV -488 60 10 183 286 29 14 chrX 58540580 58540650 -104059280 - MIR SINE MIR -58 204 134 26 50 0 0 chrX 58541577 58541617 -104058313 + AT_rich Low_complexity Low_complexity 1 40 0 614 339 73 15 chrX 58541675 58542005 -104057925 + L1 LINE L1 2 350 -5541 1338 242 31 14 chrX 58542207 58542691 -104057239 + L1 LINE L1 2893 3384 -2586 2911 274 40 12 chrX 58542715 58543534 -104056396 - L1M1 LINE L1 -6708 857 16 11287 231 36 28 chrX 58543542 58545130 -104054800 - L1 LINE L1 -1397 5451 3877 2087 144 3 0 chrX 58545130 58545435 -104054495 - AluSx SINE Alu -6 306 1 11287 231 36 28 chrX 58545435 58545926 -104054004 - L1 LINE L1 -2971 3877 3391 1518 200 0 56 chrX 58545926 58546231 -104053699 - AluJo SINE Alu -22 290 3 11287 231 36 28 chrX 58546231 58549494 -104050436 - L1 LINE L1 -3457 3391 65 258 32 0 0 chrX 58549494 58549525 -104050405 + (TG)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chrX 58549525 58549555 -104050375 + AT_rich Low_complexity Low_complexity 1 30 0 249 88 94 35 chrX 58549642 58549812 -104050118 + (TA)n Simple_repeat Simple_repeat 1 180 0 9753 236 52 19 chrX 58549812 58551781 -104048149 - L1PB4 LINE L1 -12 6847 4945 1655 190 7 3 chrX 58551781 58552076 -104047854 + AluSx SINE Alu 1 296 -16 9753 236 52 19 chrX 58552076 58552484 -104047446 - L1PB4 LINE L1 -1914 4945 4552 279 0 0 0 chrX 58552484 58552515 -104047415 + (TG)n Simple_repeat Simple_repeat 2 32 0 9753 236 52 19 chrX 58552515 58555316 -104044614 - L1PB4 LINE L1 -2307 4552 1423 301 278 22 0 chrX 58555294 58555384 -104044546 - L1PB4 LINE L1 -5277 1572 1481 * 229 418 0 20 chrX 58555794 58555940 -104043990 - L1PB4 LINE L1 -5921 929 787 14732 191 21 11 chrX 58556559 58561769 -104038161 - L1PA13 LINE L1 -8 6806 1524 36109 87 8 8 chrX 58561775 58567914 -104032016 - L1PA5 LINE L1 -4 6150 11 6011 263 37 3 chrX 58567925 58569414 -104030516 - L1PA13 LINE L1 -5248 1539 1 1777 155 24 0 chrX 58569454 58569625 -104030305 - AluSx SINE Alu -8 304 122 261 0 0 0 chrX 58569625 58569654 -104030276 + (TG)n Simple_repeat Simple_repeat 2 30 0 1777 155 24 0 chrX 58569654 58569773 -104030157 - AluSx SINE Alu -190 122 7 261 91 0 0 chrX 58569785 58569829 -104030101 - AluSp/q SINE Alu -1 302 259 1952 106 14 7 chrX 58569830 58570105 -104029825 + AluSq SINE Alu 15 291 -22 548 294 59 7 chrX 58570108 58570291 -104029639 - L1 LINE L1 -1062 5084 4877 2752 178 27 63 chrX 58570291 58570926 -104029004 + LTR9 LTR ERV1 1 612 0 548 294 59 7 chrX 58570926 58571048 -104028882 - L1 LINE L1 -1269 4877 4763 2076 220 58 5 chrX 58571063 58571543 -104028387 - L1MA4 LINE L1 -12 6288 5770 345 100 0 0 chrX 58571543 58571593 -104028337 + (TA)n Simple_repeat Simple_repeat 2 51 0 2076 220 58 5 chrX 58571593 58571693 -104028237 - L1MA4 LINE L1 -530 5770 5677 738 238 21 0 chrX 58571698 58571841 -104028089 - AluJb SINE Alu -27 285 140 3784 197 37 22 chrX 58571845 58573275 -104026655 - L1MA4 LINE L1 -617 5683 4235 33642 50 2 3 chrX 58573298 58578587 -104021343 + L1PA4 LINE L1 876 6155 0 18834 64 2 4 chrX 58578633 58581175 -104018755 - L1P LINE L1 -3601 2545 9 287 222 0 37 chrX 58581190 58581271 -104018659 - L1MC4a LINE L1 -1502 6306 6229 24 0 0 0 chrX 58581368 58581392 -104018538 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chrX 58581447 58581473 -104018457 + AT_rich Low_complexity Low_complexity 1 26 0 822 187 11 33 chrX 58581797 58581979 -104017951 + LTR9 LTR ERV1 1 178 -434 5654 184 2 22 chrX 58582002 58583108 -104016822 - MER50-int LTR ERV1 -74 7131 3895 562 338 30 24 chrX 58584314 58584811 -104015119 - MER50-int LTR ERV1 -1870 5886 5387 210 71 0 0 chrX 58585063 58585091 -104014839 + (T)n Simple_repeat Simple_repeat 1 28 0 554 316 45 32 chrX 58585202 58585752 -104014178 - MER50-int LTR ERV1 -1809 5282 3761 618 323 36 29 chrX 58586439 58586885 -104013045 - MER50-int LTR ERV1 -1621 3333 2885 21 0 0 0 chrX 58587079 58587100 -104012830 + AT_rich Low_complexity Low_complexity 1 21 0 5870 234 40 33 chrX 58587141 58588720 -104011210 - MER50-int LTR ERV1 -789 6629 1904 854 86 0 0 chrX 58588725 58588841 -104011089 - THE1B LTR MaLR 0 364 249 9269 140 56 3 chrX 58588845 58590345 -104009585 - THE1B-int LTR MaLR 0 1580 1 1783 152 110 0 chrX 58590345 58590673 -104009257 - THE1B LTR MaLR 0 364 1 959 200 88 8 chrX 58590682 58590922 -104009008 - MER50-int LTR ERV1 -5317 1888 1630 409 228 37 81 chrX 58591048 58591184 -104008746 - MER50-int LTR ERV1 -5571 1634 1505 7326 176 50 38 chrX 58591232 58592729 -104007201 - MER50-int LTR ERV1 -5684 1521 7 3613 184 18 27 chrX 58592729 58593458 -104006472 - MER50 LTR ERV1 -12 722 1 3870 198 37 67 chrX 58593458 58593624 -104006306 + MER34-int LTR ERV1 777 946 -5385 576 0 0 0 chrX 58593624 58593688 -104006242 + (TG)n Simple_repeat Simple_repeat 1 64 0 3870 198 37 67 chrX 58593688 58593831 -104006099 + MER34-int LTR ERV1 946 1092 -5239 2030 136 11 0 chrX 58593831 58594118 -104005812 + AluSx SINE Alu 2 291 -21 3870 198 37 67 chrX 58594118 58594799 -104005131 + MER34-int LTR ERV1 1092 1792 -4539 481 259 15 37 chrX 58594799 58594934 -104004996 - FLAM_A SINE Alu -1 132 1 3870 198 37 67 chrX 58594934 58596098 -104003832 + MER34-int LTR ERV1 1792 3537 -2794 37 76 0 0 chrX 58596106 58596185 -104003745 + AT_rich Low_complexity Low_complexity 1 79 0 1002 243 42 11 chrX 58596195 58596598 -104003332 - LTR2 LTR ERV1 0 449 3 1670 186 56 69 chrX 58596823 58597464 -104002466 + MER34-int LTR ERV1 3720 4352 -1979 2655 101 0 0 chrX 58597464 58597819 -104002111 + THE1A LTR MaLR 1 355 0 10949 115 9 9 chrX 58597820 58599399 -104000531 + THE1A-int LTR MaLR 2 1580 0 2324 84 6 0 chrX 58599400 58599721 -104000209 + THE1A LTR MaLR 2 324 -31 872 50 0 17 chrX 58599721 58599840 -104000090 + (TTTC)n Simple_repeat Simple_repeat 3 119 0 288 0 0 0 chrX 58600286 58600318 -103999612 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 16260 88 3 16 chrX 58600323 58603495 -103996435 - L1PA7 LINE L1 -15 6454 3310 11257 119 9 30 chrX 58603495 58605495 -103994435 - L1PA7 LINE L1 -4468 1993 15 350 132 0 0 chrX 58605495 58605548 -103994382 + THE1A LTR MaLR 303 355 0 1939 204 52 4 chrX 58605549 58606048 -103993882 + MER34-int LTR ERV1 4349 4871 -1460 897 162 12 1 chrX 58606048 58606210 -103993720 + L1PA15 LINE L1 5975 6142 -23 2278 193 15 6 chrX 58606218 58606696 -103993234 + MER34-int LTR ERV1 4888 5369 -962 6076 44 0 0 chrX 58606731 58607500 -103992430 - L1PA5 LINE L1 0 6154 5386 14232 45 1 0 chrX 58607514 58610061 -103989869 - L1PA4 LINE L1 -3 6152 3603 831 67 0 5 chrX 58609954 58610083 -103989847 - L1P LINE L1 -2437 3709 3585 * 4042 179 34 26 chrX 58610062 58610981 -103988949 + MER34-int LTR ERV1 5367 6288 -43 2198 108 0 19 chrX 58610981 58611297 -103988633 - AluSg SINE Alu 0 310 1 4042 179 34 26 chrX 58611297 58611322 -103988608 + MER34-int LTR ERV1 6288 6311 -20 275 250 10 42 chrX 58611345 58611441 -103988489 + MER34 LTR ERV1 1 93 -449 975 237 49 22 chrX 58611446 58611900 -103988030 + LTR29 LTR ERV1 137 644 0 1295 318 173 39 chrX 58612299 58613136 -103986794 + L1PBa LINE L1 8 956 -5893 304 334 26 38 chrX 58613636 58613860 -103986070 + L1PBa LINE L1 965 1562 -5286 8553 255 42 44 chrX 58613863 58618101 -103981829 + L1P5 LINE L1 1258 5503 -1355 2454 150 16 0 chrX 58618101 58618528 -103981402 - L1PA16 LINE L1 -7 6159 5726 574 100 0 0 chrX 58618537 58618617 -103981313 - L1PA7 LINE L1 -7 6147 6068 8553 255 42 44 chrX 58618617 58619163 -103980767 + L1P5 LINE L1 5511 6138 -720 351 259 0 0 chrX 58620394 58620479 -103979451 + L1PA15-16 LINE L1 1473 1557 -5292 * 703 281 39 34 chrX 58620475 58621044 -103978886 + L1PB4 LINE L1 694 1354 -4849 * 6787 33 1 0 chrX 58621037 58621854 -103978076 - L1P LINE L1 -1349 4797 3980 3324 251 41 44 chrX 58621851 58623866 -103976064 + L1PB4 LINE L1 1354 3375 -2828 * 1676 266 33 23 chrX 58623973 58624454 -103975476 + MER41E LTR ERV1 21 506 -6 345 24 0 0 chrX 58625308 58625350 -103974580 + (CAA)n Simple_repeat Simple_repeat 2 43 0 765 286 48 27 chrX 58627232 58627598 -103972332 + MER66-int LTR ERV1 1560 2647 -4029 1891 328 57 56 chrX 58627890 58630301 -103969629 + MER66-int LTR ERV1 2579 4991 -2765 2075 132 47 9 chrX 58630569 58630911 -103969019 - THE1A LTR MaLR 0 355 1 3005 96 10 0 chrX 58630911 58631326 -103968604 - THE1A-int LTR MaLR 0 1580 1162 2435 142 30 47 chrX 58631329 58631802 -103968128 + MER4C LTR ERV1 1 465 0 6037 230 25 21 chrX 58631804 58633549 -103966381 + L1PB4 LINE L1 3428 5179 -1024 1884 136 0 0 chrX 58633549 58633836 -103966094 + L1PA14 LINE L1 5865 6151 -10 3910 199 18 8 chrX 58633839 58634839 -103965091 + L1PB4 LINE L1 5189 6199 -14 3357 200 23 8 chrX 58634853 58635562 -103964368 + L1PB4 LINE L1 5485 6203 -10 281 145 16 0 chrX 58635577 58635639 -103964291 + (TA)n Simple_repeat Simple_repeat 1 63 0 1360 195 29 55 chrX 58635748 58635991 -103963939 - L1MA6 LINE L1 -5 6295 6047 210 37 0 0 chrX 58635991 58636018 -103963912 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2232 77 0 18 chrX 58636018 58636304 -103963626 - AluY SINE Alu -30 281 1 1360 195 29 55 chrX 58636304 58636444 -103963486 - L1MA6 LINE L1 -251 6049 5921 1440 121 53 0 chrX 58636444 58636650 -103963280 + AluSg/x SINE Alu 78 294 -18 2706 179 21 44 chrX 58636651 58637261 -103962669 - L1MA6 LINE L1 -371 5929 5334 356 188 62 0 chrX 58637262 58637358 -103962572 + L1MDa LINE L1 1839 1940 -4600 630 328 103 40 chrX 58637360 58637808 -103962122 + L1PB4 LINE L1 1 476 -6373 339 348 73 88 chrX 58638374 58638883 -103961047 + L1PB4 LINE L1 639 1139 -5710 368 250 0 0 chrX 58638883 58638963 -103960967 + L1PA15-16 LINE L1 1477 1556 -5293 * 9183 264 46 19 chrX 58638956 58640155 -103959775 + L1PB4 LINE L1 1335 2501 -4357 1779 139 72 28 chrX 58640155 58640514 -103959416 + THE1C LTR MaLR 1 375 0 9183 264 46 19 chrX 58640514 58642568 -103957362 + L1PB4 LINE L1 2501 4500 -2358 2113 163 22 0 chrX 58642568 58642924 -103957006 + THE1B LTR MaLR 1 364 0 9454 131 36 32 chrX 58642924 58644499 -103955431 + THE1B-int LTR MaLR 1 1580 0 1992 157 50 0 chrX 58644503 58644846 -103955084 + THE1B LTR MaLR 5 364 0 9183 264 46 19 chrX 58644846 58645570 -103954360 + L1PB4 LINE L1 4502 5206 -1652 530 29 0 14 chrX 58645570 58645639 -103954291 + (AATAG)n Simple_repeat Simple_repeat 3 70 0 9183 264 46 19 chrX 58645639 58646931 -103952999 + L1PB4 LINE L1 5206 6853 -5 1484 224 32 3 chrX 58646995 58647370 -103952560 + L1MB2 LINE L1 5779 6164 -7 243 316 77 0 chrX 58647501 58647618 -103952312 + L1MDa LINE L1 2120 2245 -4295 23190 58 1 1 chrX 58647688 58651459 -103948471 - L1PA5 LINE L1 -15 6139 2364 9766 130 6 5 chrX 58651459 58652941 -103946989 - L1PA5 LINE L1 -4653 1493 11 313 274 67 15 chrX 58653013 58653148 -103946782 + L1MDa LINE L1 2033 2174 -4366 536 248 99 0 chrX 58653179 58653456 -103946474 + L1MDa LINE L1 2299 2604 -3932 210 37 0 0 chrX 58653456 58653483 -103946447 + (CAA)n Simple_repeat Simple_repeat 2 28 0 10031 127 20 4 chrX 58653486 58654964 -103944966 + L1P3 LINE L1 1 1501 -4960 8886 127 4 3 chrX 58654959 58656381 -103943549 + L1P3 LINE L1 2405 3828 -2633 * 328 275 50 33 chrX 58656376 58656558 -103943372 + L1M3b LINE L1 579 763 -5518 * 996 320 30 85 chrX 58656682 58656775 -103943155 + L1M3b LINE L1 678 775 -5506 999 78 0 21 chrX 58656775 58656917 -103943013 - L1PA8 LINE L1 -3 6169 6031 996 320 30 85 chrX 58656917 58657432 -103942498 + L1M3b LINE L1 775 1252 -5029 * 3495 254 67 29 chrX 58657428 58658752 -103941178 + L1MA4 LINE L1 15 1496 -4832 1953 136 14 10 chrX 58658752 58659046 -103940884 + AluSg SINE Alu 1 295 -15 3495 254 67 29 chrX 58659046 58660054 -103939876 + L1MA4 LINE L1 1496 2464 -3864 506 247 31 18 chrX 58660108 58660479 -103939451 + L1MA4 LINE L1 2982 3440 -2888 * 3297 247 19 20 chrX 58660474 58661428 -103938502 - L1 LINE L1 -796 5350 4396 270 0 0 0 chrX 58661428 58661458 -103938472 + (TG)n Simple_repeat Simple_repeat 1 30 0 3297 247 19 20 chrX 58661458 58661617 -103938313 - L1 LINE L1 -1750 4396 4238 1922 187 5 3 chrX 58661617 58661991 -103937939 + L1PA16 LINE L1 5779 6153 -13 186 43 0 0 chrX 58662555 58662578 -103937352 + (CA)n Simple_repeat Simple_repeat 2 24 0 6178 232 26 22 chrX 58662635 58663307 -103936623 + L1MA4 LINE L1 3434 4102 -2380 3168 128 0 8 chrX 58663307 58663798 -103936132 - L1PB1 LINE L1 -3 6148 5662 6178 232 26 22 chrX 58663798 58666155 -103933775 + L1MA4 LINE L1 4102 6471 -11 1142 258 74 29 chrX 58666171 58666710 -103933220 + L1M3b LINE L1 1329 1885 -4466 1351 231 25 0 chrX 58666710 58666831 -103933099 + AluJb SINE Alu 1 118 -194 300 53 0 0 chrX 58666831 58666869 -103933061 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1351 231 25 0 chrX 58666869 58667028 -103932902 + AluJb SINE Alu 118 288 -24 1142 258 74 29 chrX 58667028 58667265 -103932665 + L1M3b LINE L1 1885 2110 -4241 797 249 39 52 chrX 58667520 58668116 -103931814 + L1M3b LINE L1 2086 2674 -3676 1704 220 78 8 chrX 58668116 58668512 -103931418 - MSTB LTR MaLR -2 424 1 797 249 39 52 chrX 58668512 58668572 -103931358 + L1M3b LINE L1 2674 2733 -3617 995 344 60 11 chrX 58668585 58669105 -103930825 + L1M2a LINE L1 4 548 -6620 1334 311 31 12 chrX 58669753 58670265 -103929665 + L1M2a LINE L1 918 1439 -5729 28 0 0 0 chrX 58670275 58670303 -103929627 + AT_rich Low_complexity Low_complexity 1 28 0 4077 120 3 14 chrX 58670438 58671105 -103928825 + L1PA13 LINE L1 5433 6092 -71 3361 266 39 25 chrX 58671088 58672909 -103927021 + L1M2a LINE L1 1426 3008 -4160 * 1060 278 54 13 chrX 58672956 58673493 -103926437 - L1M4 LINE L1 -3338 2808 2250 367 321 39 33 chrX 58673494 58673842 -103926088 - MER31B LTR ERV1 -2 464 5 705 243 48 72 chrX 58673863 58674196 -103925734 - MER31B-int LTR ERV1 -40 4896 4572 325 262 87 0 chrX 58674487 58674590 -103925340 - MER31B-int LTR ERV1 -466 4470 4359 517 231 50 63 chrX 58674669 58674890 -103925040 - MER31B-int LTR ERV1 -603 4333 4116 1797 243 47 96 chrX 58674901 58675353 -103924577 - MER31B-int LTR ERV1 -1321 3615 3142 1738 160 58 25 chrX 58675353 58675715 -103924215 - THE1C LTR MaLR -1 374 1 1797 243 47 96 chrX 58675715 58676478 -103923452 - MER31B-int LTR ERV1 -1794 3142 2460 6001 258 53 42 chrX 58676494 58679340 -103920590 + L1M1 LINE L1 17 3608 -3957 441 379 40 32 chrX 58679417 58679947 -103919983 + L1PA13 LINE L1 867 1400 -6174 206 122 20 41 chrX 58680283 58680302 -103919628 + A-rich Low_complexity Low_complexity 1 19 -29 2161 124 7 0 chrX 58680302 58680609 -103919321 + AluSg SINE Alu 1 309 -1 206 122 20 41 chrX 58680609 58680638 -103919292 + A-rich Low_complexity Low_complexity 19 48 0 2826 277 47 14 chrX 58680729 58682658 -103917272 + L1PA13 LINE L1 2182 4182 -3402 1516 132 4 16 chrX 58682692 58682950 -103916980 + THE1C LTR MaLR 1 255 -120 742 163 0 0 chrX 58682956 58683085 -103916845 + THE1-int LTR MaLR 776 904 -676 1526 236 41 2 chrX 58683112 58683528 -103916402 - L1 LINE L1 -1228 4918 4487 7577 28 0 2 chrX 58683534 58684878 -103915052 - L1PA3 LINE L1 -3 6152 4810 4995 147 66 23 chrX 58684879 58685355 -103914575 + L1PA16 LINE L1 4920 5374 -792 2572 36 0 0 chrX 58685355 58685657 -103914273 + AluY SINE Alu 1 302 -9 4995 147 66 23 chrX 58685657 58686226 -103913704 + L1PA16 LINE L1 5374 6050 -116 2054 136 3 13 chrX 58686226 58686528 -103913402 - AluSx SINE Alu -13 299 1 4995 147 66 23 chrX 58686528 58686651 -103913279 + L1PA16 LINE L1 6050 6166 0 420 279 0 0 chrX 58686646 58686775 -103913155 + L1PA15-16 LINE L1 2604 2732 -4117 * 4356 127 6 1 chrX 58686790 58687462 -103912468 + THE1C-int LTR MaLR 905 1579 -1 2279 138 19 21 chrX 58687463 58687839 -103912091 + THE1C LTR MaLR 1 375 0 1335 276 72 11 chrX 58687860 58688570 -103911360 + L1 LINE L1 3500 4252 -2597 6484 261 29 43 chrX 58688714 58690707 -103909223 + L1M2 LINE L1 321 2340 -4828 2287 54 3 27 chrX 58690707 58691001 -103908929 + AluSp SINE Alu 1 287 -26 294 95 0 0 chrX 58691001 58691043 -103908887 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 6484 261 29 43 chrX 58691043 58691431 -103908499 + L1M2 LINE L1 2338 2670 -4498 306 96 0 0 chrX 58691453 58691505 -103908425 + L1M2 LINE L1 1958 2009 -5159 * 2561 213 24 41 chrX 58691491 58692567 -103907363 + L1M2 LINE L1 2657 3705 -3462 2177 113 13 3 chrX 58692567 58692876 -103907054 - AluSq SINE Alu -1 312 1 2561 213 24 41 chrX 58692876 58693106 -103906824 + L1M2 LINE L1 3705 3938 -3229 1005 298 68 72 chrX 58693150 58693871 -103906059 + L1 LINE L1 21 738 -6471 487 302 51 62 chrX 58694394 58695046 -103904884 + L1 LINE L1 1086 1947 -5262 228 35 0 0 chrX 58695046 58695075 -103904855 + (CAA)n Simple_repeat Simple_repeat 2 30 0 487 302 51 62 chrX 58695075 58695149 -103904781 + L1 LINE L1 1947 2020 -5189 277 315 0 0 chrX 58696406 58696498 -103903432 + L1PA15-16 LINE L1 1473 1564 -5285 * 4235 251 32 26 chrX 58696495 58698706 -103901224 + L1PA16 LINE L1 1348 3666 -3183 * 4807 207 13 9 chrX 58698700 58699020 -103900910 + L1PA16 LINE L1 5081 5398 -1471 189 0 0 0 chrX 58699020 58699041 -103900889 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 4807 207 13 9 chrX 58699041 58700497 -103899433 + L1PA16 LINE L1 5398 6861 -8 * 4947 229 33 28 chrX 58700492 58700853 -103899077 + L1 LINE L1 4090 4448 -2760 5473 93 11 31 chrX 58700853 58701661 -103898269 - LTR25 LTR ERV1 -2 792 1 4947 229 33 28 chrX 58701661 58702826 -103897104 + L1 LINE L1 4448 5624 -1584 3690 270 23 40 chrX 58702839 58704631 -103895299 + L1PBa LINE L1 3 1644 -5219 2087 181 3 13 chrX 58704639 58705031 -103894899 + L1PBb LINE L1 255 642 -5562 2890 110 2 22 chrX 58705031 58705484 -103894446 + L1PB1 LINE L1 5708 6151 0 3985 163 43 66 chrX 58705484 58707128 -103892802 - MER4-int LTR ERV1 -4116 2482 1344 4129 123 11 11 chrX 58707128 58707763 -103892167 + MER41B LTR ERV1 1 635 0 3859 143 9 8 chrX 58707763 58708392 -103891538 + MER41B-int LTR ERV1 1 630 -5316 3721 139 34 4 chrX 58708377 58709230 -103890700 + MER41B-int LTR ERV1 1077 2017 -3929 * 4583 136 35 31 chrX 58709222 58710080 -103889850 + MER41B-int LTR ERV1 2777 3637 -3900 1958 123 113 7 chrX 58710068 58710475 -103889455 + MER41B-int LTR ERV1 3300 3749 -2197 * 1920 49 0 0 chrX 58710480 58710726 -103889204 + L1PA5 LINE L1 3972 4217 -1929 7648 41 0 1 chrX 58710727 58712425 -103887505 + L1PA5 LINE L1 4453 6149 -5 418 153 82 0 chrX 58712414 58712499 -103887431 - L1MA8 LINE L1 -145 6146 6055 * 2902 169 4 0 chrX 58712514 58712993 -103886937 + MER41B-int LTR ERV1 5466 5946 0 3653 136 12 94 chrX 58712995 58713685 -103886245 + MER41B LTR ERV1 3 635 0 2363 183 103 36 chrX 58713688 58713863 -103886067 - MER4-int LTR ERV1 -4320 1117 955 240 35 0 0 chrX 58713863 58713892 -103886038 + (CA)n Simple_repeat Simple_repeat 2 30 0 2363 183 103 36 chrX 58713892 58714878 -103885052 - MER4-int LTR ERV1 -4482 955 13 2141 149 13 84 chrX 58714892 58715426 -103884504 - MER4A LTR ERV1 0 664 100 6461 66 4 54 chrX 58715426 58716867 -103883063 - SVA Other Other -520 1383 433 2711 80 38 90 chrX 58716895 58717395 -103882535 - SVA Other Other -520 866 393 21 36 0 0 chrX 58717446 58717474 -103882456 + GC_rich Low_complexity Low_complexity 1 28 0 267 188 101 29 chrX 58717544 58717613 -103882317 + L1MC5 LINE L1 7303 7376 -585 * 772 227 9 19 chrX 58717608 58717824 -103882106 + L1M4 LINE L1 5159 5372 -774 883 118 0 15 chrX 58717826 58717962 -103881968 - MER4A LTR ERV1 -530 134 1 5684 113 106 121 chrX 58718635 58720220 -103879710 - pTR5 LTR ERV1 0 2438 743 498 137 49 0 chrX 58720314 58720416 -103879514 - Charlie5 DNA MER1_type -90 2522 2416 8200 36 0 1 chrX 58720416 58722119 -103877811 - L1PA5 LINE L1 -1 6153 4453 2055 49 0 0 chrX 58722120 58722366 -103877564 - L1PA5 LINE L1 -1929 4217 3972 5003 135 60 27 chrX 58722371 58723624 -103876306 - MER41B-int LTR ERV1 -2197 3749 2777 4026 142 64 30 chrX 58723616 58724478 -103875452 - MER41B-int LTR ERV1 -3929 2017 1224 * 4137 143 9 8 chrX 58724454 58725083 -103874847 - MER41B-int LTR ERV1 -5316 630 1 4445 137 5 5 chrX 58725083 58725718 -103874212 - MER41B LTR ERV1 0 635 1 4516 162 92 66 chrX 58725718 58727362 -103872568 + MER4-int LTR ERV1 1266 2484 -4114 3117 108 2 22 chrX 58727362 58727815 -103872115 - L1PB1 LINE L1 0 6151 5708 2235 181 3 13 chrX 58727815 58728207 -103871723 - L1PBb LINE L1 -5562 1301 914 4251 265 26 44 chrX 58728215 58730007 -103869923 - L1PBa LINE L1 -5219 1644 3 5591 229 33 28 chrX 58730020 58731185 -103868745 - L1 LINE L1 -1584 4562 3386 5854 99 11 31 chrX 58731185 58731993 -103867937 + LTR25 LTR ERV1 1 792 -2 5591 229 33 28 chrX 58731993 58732354 -103867576 - L1 LINE L1 -2760 3386 3028 5265 236 27 22 chrX 58732349 58733806 -103866124 - L1PA16 LINE L1 -8 6860 5412 * 189 0 0 0 chrX 58733806 58733827 -103866103 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 5265 236 27 22 chrX 58733827 58736354 -103863576 - L1PA16 LINE L1 -1456 5412 1347 309 283 11 11 chrX 58736351 58736443 -103863487 - L1PA16 LINE L1 -5285 1563 1472 * 609 299 52 64 chrX 58737698 58737780 -103862150 - L1PA16 LINE L1 -5181 1668 1587 228 35 0 0 chrX 58737780 58737809 -103862121 + (TTG)n Simple_repeat Simple_repeat 2 30 0 609 299 52 64 chrX 58737809 58738461 -103861469 - L1PA16 LINE L1 -5262 1587 726 1203 298 68 72 chrX 58738984 58739705 -103860225 - L1M2b LINE L1 -6471 738 21 2900 214 24 41 chrX 58739738 58739979 -103859951 - L1 LINE L1 -3218 3949 3705 2176 113 13 3 chrX 58739979 58740288 -103859642 + AluSq SINE Alu 1 312 -1 2900 214 24 41 chrX 58740288 58741364 -103858566 - L1 LINE L1 -3462 3705 2657 330 96 0 0 chrX 58741350 58741402 -103858528 - L1 LINE L1 -5159 2009 1958 * 7236 261 29 43 chrX 58741424 58741812 -103858118 - L1M2 LINE L1 -4498 2351 1959 294 95 0 0 chrX 58741812 58741854 -103858076 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2389 56 3 0 chrX 58741854 58742140 -103857790 - AluSp SINE Alu -26 287 1 7236 261 29 43 chrX 58742140 58744130 -103855800 - L1M2 LINE L1 -4888 1961 5 534 255 72 19 chrX 58744142 58744350 -103855580 + HERVL74 LTR ERVL 5425 5643 -42 243 188 0 0 chrX 58744374 58744438 -103855492 + L1MC4 LINE L1 6640 6703 -1339 1203 106 0 0 chrX 58744443 58744651 -103855279 + (TA)n Simple_repeat Simple_repeat 1 208 0 2022 229 79 25 chrX 58744659 58745179 -103854751 + MER74A LTR ERVL 11 558 0 3210 263 78 55 chrX 58745309 58745359 -103854571 - L1MC4 LINE L1 -254 7788 7741 902 249 53 0 chrX 58745359 58745568 -103854362 + MER58A DNA MER1_type 2 221 -3 3210 263 78 55 chrX 58745568 58746677 -103853253 - L1MC4 LINE L1 -301 7741 6590 642 40 40 0 chrX 58746677 58746778 -103853152 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 3210 263 78 55 chrX 58746778 58747008 -103852922 - L1MC4 LINE L1 -1452 6590 6367 4261 220 16 1 chrX 58747016 58748203 -103851727 - L1MB1 LINE L1 0 6168 4964 1340 275 28 71 chrX 58748195 58748506 -103851424 + L1 LINE L1 2400 2672 -3474 * 6592 90 16 13 chrX 58748506 58750363 -103849567 - L1PA11 LINE L1 -2 6172 4302 1340 275 28 71 chrX 58750363 58750669 -103849261 + L1 LINE L1 2672 2990 -3156 * 10019 239 77 29 chrX 58750668 58751502 -103848428 - L1PA16 LINE L1 -1 7603 6810 4093 29 0 0 chrX 58751502 58751949 -103847981 - L1PA5 LINE L1 -4 6150 5704 10019 239 77 29 chrX 58751949 58753869 -103846061 - L1PA16 LINE L1 -794 6810 4983 13310 34 1 3 chrX 58753869 58756159 -103843771 - L1PA4 LINE L1 0 6155 3868 10019 239 77 29 chrX 58756159 58758204 -103841726 - L1PA16 LINE L1 -2621 4983 2474 9122 42 0 2 chrX 58758204 58760035 -103839895 - L1PA4 LINE L1 -3 6152 4324 10019 239 77 29 chrX 58760035 58760342 -103839588 - L1PA16 LINE L1 -5130 2474 2183 453 294 7 14 chrX 58760504 58760650 -103839280 - L1PA16 LINE L1 -6563 1011 867 7782 244 44 21 chrX 58760736 58763085 -103836845 - L1M4 LINE L1 -3377 3729 643 828 30 0 0 chrX 58763085 58763184 -103836746 + (TC)n Simple_repeat Simple_repeat 2 100 0 7782 244 44 21 chrX 58763184 58763631 -103836299 - L1M4 LINE L1 -6463 643 208 3736 164 60 19 chrX 58763644 58764527 -103835403 - MER41B-int LTR ERV1 -4643 1955 1037 3884 130 19 11 chrX 58764527 58765157 -103834773 - MER41B LTR ERV1 0 635 1 1764 83 36 0 chrX 58765157 58765409 -103834521 - MER41B-int LTR ERV1 0 5946 5686 1597 86 39 0 chrX 58765405 58765637 -103834293 - MER41B-int LTR ERV1 -20 5926 5686 * 10896 114 12 20 chrX 58765633 58767409 -103832521 - MER41B-int LTR ERV1 -20 5926 4164 5431 149 44 39 chrX 58767409 58768563 -103831367 - MER41B-int LTR ERV1 -2823 3919 2644 663 151 0 17 chrX 58768559 58768678 -103831252 - MER41B-int LTR ERV1 -3929 2017 1901 * 1707 147 53 64 chrX 58768680 58769054 -103830876 - MER41B-int LTR ERV1 -4185 1761 1392 3970 157 12 9 chrX 58769055 58769743 -103830187 - MER41B-int LTR ERV1 -5256 690 1 3759 132 20 20 chrX 58769743 58770378 -103829552 - MER41B LTR ERV1 0 635 1 3663 146 117 68 chrX 58770378 58771370 -103828560 - MER4A-int LTR ERV1 -5558 1040 1 1567 127 182 20 chrX 58771373 58771719 -103828211 - MER4A LTR ERV1 0 664 263 576 163 0 0 chrX 58771719 58771817 -103828113 - MER4A LTR ERV1 -566 98 1 2745 135 25 41 chrX 58771817 58772374 -103827556 + MER4A-int LTR ERV1 6044 6591 -7 3316 128 16 82 chrX 58772381 58773024 -103826906 + MER4A LTR ERV1 1 600 0 2872 10 0 0 chrX 58773421 58773732 -103826198 - AluY SINE Alu 0 311 1 693 258 52 26 chrX 58774530 58774801 -103825129 - LTR55 LTR ERV -15 533 256 396 218 23 0 chrX 58774804 58774891 -103825039 - LTR55 LTR ERV -413 135 47 3823 87 9 13 chrX 58774891 58775563 -103824367 + L1PA8A LINE L1 5276 6128 -3 349 98 0 0 chrX 58775597 58775648 -103824282 - LTR55 LTR ERV -488 60 10 26 50 0 0 chrX 58776772 58776812 -103823118 + AT_rich Low_complexity Low_complexity 1 40 0 302 303 20 13 chrX 58776870 58777022 -103822908 + L1MB2 LINE L1 2 154 -5737 21 36 0 0 chrX 58777023 58777051 -103822879 + AT_rich Low_complexity Low_complexity 1 28 0 763 36 85 0 chrX 58777064 58777229 -103822701 + (TA)n Simple_repeat Simple_repeat 1 179 0 332 373 28 10 chrX 58777233 58777416 -103822514 + L1MB2 LINE L1 204 632 -5259 5271 231 62 16 chrX 58777613 58780511 -103819419 + L1MB2 LINE L1 2889 5920 -75 569 199 23 0 chrX 58781636 58781767 -103818163 + L1MB7 LINE L1 6042 6175 -9 4152 129 69 15 chrX 58782364 58782696 -103817234 - MER4E LTR ERV1 0 779 466 10847 76 15 0 chrX 58782696 58784934 -103814996 + L1PA7 LINE L1 3902 6153 -1 4152 129 69 15 chrX 58784934 58785349 -103814581 - MER4E LTR ERV1 -313 466 1 5313 123 63 24 chrX 58786180 58787162 -103812768 - MER4E-int LTR ERV1 -113 6645 5626 2539 132 111 8 chrX 58787169 58787932 -103811998 - MER4E-int LTR ERV1 -1375 5383 4452 1064 204 70 4 chrX 58787931 58788161 -103811769 - MER4E-int LTR ERV1 -2670 4088 3844 * 38162 53 2 1 chrX 58788161 58794014 -103805916 - L1PA4 LINE L1 0 6155 297 586 61 0 12 chrX 58794014 58794096 -103805834 - L1PA4 LINE L1 -6063 83 3 7177 132 78 27 chrX 58794096 58795635 -103804295 - MER4E-int LTR ERV1 -2905 3853 1782 7027 54 11 0 chrX 58795635 58797157 -103802773 + L1PA5 LINE L1 4582 6150 -4 7177 132 78 27 chrX 58797157 58798046 -103801884 - MER4E-int LTR ERV1 -4976 1782 940 1651 133 50 81 chrX 58798058 58798210 -103801720 - MER4B-int LTR ERV1 -5569 1189 1034 2386 103 0 0 chrX 58798210 58798522 -103801408 + AluSp SINE Alu 1 312 -1 1651 133 50 81 chrX 58798522 58798966 -103800964 - MER4B-int LTR ERV1 -5724 1034 555 1473 61 0 0 chrX 58798982 58799178 -103800752 - MER4E LTR ERV1 -27 739 544 850 249 89 11 chrX 58799203 58799653 -103800277 + L1M4 LINE L1 2477 2961 -3185 1388 179 54 88 chrX 58799653 58800117 -103799813 + MER83 LTR ERV1 1 448 0 4747 273 55 52 chrX 58800117 58804264 -103795666 + MER83-int LTR ERV1 12 4629 -1083 2127 143 7 0 chrX 58804458 58804766 -103795164 + AluSx SINE Alu 1 310 -2 642 300 48 51 chrX 58804845 58806128 -103793802 + MER83-int LTR ERV1 4363 6556 -1885 2293 96 0 10 chrX 58806542 58806844 -103793086 - AluSx SINE Alu -6 306 8 1772 191 13 8 chrX 58807083 58807465 -103792465 + MER83-int LTR ERV1 1932 2315 -1970 402 311 0 0 chrX 58808712 58808875 -103791055 + MER83-int LTR ERV1 6542 8177 -449 1922 166 0 0 chrX 58809062 58809381 -103790549 + MER83-int LTR ERV1 3956 4274 -11 1238 193 39 87 chrX 58809382 58809844 -103790086 + MER83 LTR ERV1 1 440 -8 788 314 32 49 chrX 58809913 58810508 -103789422 + L1PA16 LINE L1 9 593 -6988 878 325 37 39 chrX 58810529 58811319 -103788611 + L1PA16 LINE L1 1545 2181 -5400 2407 136 15 2 chrX 58811609 58812014 -103787916 - MER41B LTR ERV1 0 635 226 2405 279 40 12 chrX 58812017 58813073 -103786857 + L1PA16 LINE L1 3416 4500 -3084 16558 45 3 0 chrX 58813089 58815898 -103784032 - L1PA4 LINE L1 -4 6151 3337 23991 67 4 0 chrX 58815900 58819158 -103780772 - L1PA4 LINE L1 -2871 3275 7 6154 226 34 31 chrX 58819183 58821150 -103778780 + L1PA16 LINE L1 4542 6501 -1103 5386 106 81 0 chrX 58821150 58822534 -103777396 + L1PA11 LINE L1 4697 6172 -2 6154 226 34 31 chrX 58822534 58822581 -103777349 + L1PA16 LINE L1 6501 6546 -1058 365 110 14 27 chrX 58822581 58822654 -103777276 + L1PA16 LINE L1 6092 6163 -3 6154 226 34 31 chrX 58822654 58823694 -103776236 + L1PA16 LINE L1 6546 7595 -9 898 282 38 73 chrX 58823735 58824741 -103775189 + L1M4 LINE L1 3074 4044 -2102 390 21 0 0 chrX 58824989 58825036 -103774894 + (TG)n Simple_repeat Simple_repeat 2 48 0 860 191 94 58 chrX 58826973 58827275 -103772655 - MSTC LTR MaLR 0 428 74 4013 258 64 34 chrX 58827343 58828679 -103771251 - MSTC-int LTR MaLR 0 1735 360 3711 180 36 4 chrX 58828660 58829623 -103770307 + L1PA5 LINE L1 4480 5472 -696 * 10683 175 31 27 chrX 58829671 58831073 -103768857 - L1PB1 LINE L1 -1 6150 4756 2459 56 0 7 chrX 58831073 58831376 -103768554 - AluY SINE Alu -10 301 1 10683 175 31 27 chrX 58831376 58831747 -103768183 - L1PB1 LINE L1 -1395 4756 4388 240 35 0 0 chrX 58831747 58831776 -103768154 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 10683 175 31 27 chrX 58831776 58833581 -103766349 - L1PB1 LINE L1 -1763 4388 2555 3112 71 2 15 chrX 58833584 58834100 -103765830 + L1PA5 LINE L1 5442 6141 -13 212 171 0 0 chrX 58834110 58834151 -103765779 + A-rich Low_complexity Low_complexity 5 45 0 2174 182 34 2 chrX 58834152 58834646 -103765284 + L1PA13 LINE L1 5571 6158 -5 6451 200 43 13 chrX 58834652 58836574 -103763356 + L1M2 LINE L1 3750 5738 -562 351 91 0 0 chrX 58836849 58836904 -103763026 - MLT2A1 LTR ERVL 0 444 390 189 94 0 0 chrX 58836924 58836956 -103762974 + (TA)n Simple_repeat Simple_repeat 1 32 0 2727 88 18 8 chrX 58836959 58837359 -103762571 - MLT2A1 LTR ERVL -40 404 1 40525 77 19 4 chrX 58837359 58840614 -103759316 - HERVL-A1 LTR ERVL 0 5654 2281 3283 89 45 128 chrX 58840614 58841279 -103758651 - LTR66 LTR ERVL 0 610 1 40525 77 19 4 chrX 58841279 58843594 -103756336 - HERVL-A1 LTR ERVL -3373 2281 2 423 36 0 0 chrX 58843595 58843650 -103756280 - MLT2A2 LTR ERVL 0 453 399 198 0 0 0 chrX 58843668 58843690 -103756240 + (TA)n Simple_repeat Simple_repeat 2 23 0 2901 119 14 5 chrX 58843694 58844132 -103755798 - MLT2A1 LTR ERVL -2 442 1 2039 235 53 8 chrX 58844367 58844860 -103755070 + MLT2B3 LTR ERVL 1 515 -39 1333 217 27 3 chrX 58844936 58845272 -103754658 + HERVL-B3 LTR ERVL 1 344 -5310 747 167 0 7 chrX 58845272 58845416 -103754514 + L1PA12 LINE L1 4444 4586 -1560 2710 13 0 0 chrX 58845416 58845726 -103754204 - L1PA2 LINE L1 -4 6151 5842 13923 41 2 0 chrX 58845726 58847526 -103752404 + L1P LINE L1 1058 2860 -3286 5432 96 61 4 chrX 58847526 58849092 -103750838 + L1PA12 LINE L1 4581 6158 -10 27668 187 26 4 chrX 58849104 58854364 -103745566 + HERVL-B3 LTR ERVL 387 5763 -1 2883 189 70 17 chrX 58854364 58854856 -103745074 + Ricksha DNA DNA 338 863 -1183 219 289 0 0 chrX 58854856 58854908 -103745022 + (TA)n Simple_repeat Simple_repeat 2 53 0 453 176 0 0 chrX 58854917 58855002 -103744928 + ERVL LTR ERVL 5152 5236 -528 254 159 0 0 chrX 58855022 58855066 -103744864 + MLT2B2 LTR ERVL 472 515 0 542 192 45 23 chrX 58855125 58855302 -103744628 + L1M4 LINE L1 4204 4384 -1762 1822 285 63 33 chrX 58855302 58856182 -103743748 + L1MC3 LINE L1 5575 6488 -1297 2214 133 16 16 chrX 58856182 58856557 -103743373 + THE1C LTR MaLR 1 375 0 1822 285 63 33 chrX 58856557 58856648 -103743282 + L1MC3 LINE L1 6488 6575 -1210 1123 208 102 1 chrX 58856788 58857193 -103742737 + MLT1D LTR MaLR 27 505 0 816 236 19 27 chrX 58857197 58857226 -103742704 + L1MD3 LINE L1 6632 6660 -1335 2138 122 7 3 chrX 58857226 58857530 -103742400 + AluSx SINE Alu 1 305 -7 816 236 19 27 chrX 58857530 58857758 -103742172 + L1MD3 LINE L1 6660 6887 -1108 21212 110 21 72 chrX 58857821 58863104 -103736826 + L1PA7 LINE L1 12 4748 -1406 213 39 0 0 chrX 58863104 58863130 -103736800 + (CAGAA)n Simple_repeat Simple_repeat 4 29 0 21212 110 21 72 chrX 58863130 58864468 -103735462 + L1PA7 LINE L1 4748 6153 -1 1931 136 10 17 chrX 58864638 58864933 -103734997 - AluSq SINE Alu -20 293 1 1006 68 30 23 chrX 58865415 58865548 -103734382 + AluY SINE Alu 1 134 -177 2317 70 13 10 chrX 58865548 58865850 -103734080 + AluY SINE Alu 1 303 -8 1694 166 7 0 chrX 58866028 58866335 -103733595 + L1PA13 LINE L1 5848 6156 -7 584 234 43 78 chrX 58866341 58866493 -103733437 + L1MD3 LINE L1 6973 7114 -881 2248 81 7 7 chrX 58866493 58866790 -103733140 - AluY SINE Alu -14 297 1 584 234 43 78 chrX 58866790 58866893 -103733037 + L1MD3 LINE L1 7114 7219 -776 * 3169 248 49 35 chrX 58866885 58868105 -103731825 + L1M4 LINE L1 917 2261 -4121 1861 122 8 4 chrX 58868105 58868367 -103731563 + AluSx SINE Alu 1 263 -49 3169 248 49 35 chrX 58868367 58868900 -103731030 + L1M4 LINE L1 2261 2785 -3597 240 229 33 0 chrX 58868921 58868982 -103730948 + L1MD3 LINE L1 7230 7292 -703 321 281 31 0 chrX 58868982 58869078 -103730852 + MLT1F1 LTR MaLR 26 124 -443 1290 241 45 18 chrX 58869103 58869484 -103730446 + L1MD3 LINE L1 7419 7809 -186 956 242 67 76 chrX 58869479 58870020 -103729910 + L1M4 LINE L1 4932 5467 -915 * 200 167 21 0 chrX 58870034 58870082 -103729848 + (TA)n Simple_repeat Simple_repeat 2 50 0 333 328 72 17 chrX 58870094 58870329 -103729601 + L1ME4a LINE L1 2 249 -6293 2082 234 53 11 chrX 58870614 58871684 -103728246 + L1ME4a LINE L1 2226 3344 -3300 229 224 15 15 chrX 58871677 58871744 -103728186 + L1ME3 LINE L1 6093 6159 -3 * 23 0 0 0 chrX 58871744 58871767 -103728163 + AT_rich Low_complexity Low_complexity 1 23 0 1765 170 14 3 chrX 58872385 58872679 -103727251 + AluJb SINE Alu 1 297 -15 248 278 0 14 chrX 58873374 58873446 -103726484 + L2 LINE L2 3186 3256 -57 22 35 0 0 chrX 58873982 58874011 -103725919 + AT_rich Low_complexity Low_complexity 1 29 0 983 299 56 49 chrX 58874490 58875468 -103724462 + L1ME4a LINE L1 3942 4926 -1718 437 253 39 26 chrX 58875820 58875974 -103723956 + L1ME4a LINE L1 5420 5575 -1069 290 272 0 0 chrX 58876572 58876653 -103723277 + GA-rich Low_complexity Low_complexity 2 82 0 365 243 206 15 chrX 58878917 58879189 -103720741 - L1ME4a LINE L1 0 6121 5798 240 262 78 10 chrX 58879293 58879396 -103720534 + L1ME4a LINE L1 6315 6424 -195 249 222 28 69 chrX 58879498 58879570 -103720360 + MIR SINE MIR 149 217 -45 226 255 0 0 chrX 58880431 58880482 -103719448 + L2 LINE L2 3263 3313 0 408 255 0 9 chrX 58880719 58880825 -103719105 + MIR SINE MIR 141 245 -17 239 247 68 14 chrX 58881855 58881928 -103718002 + L1MDa LINE L1 566 642 -5898 625 221 39 30 chrX 58882230 58882461 -103717469 + L1MDa LINE L1 1002 1234 -5309 * 5606 214 43 21 chrX 58882451 58882818 -103717112 + L1MA5 LINE L1 2051 2408 -5157 2602 71 0 0 chrX 58882818 58883129 -103716801 + AluY SINE Alu 1 311 0 285 51 0 0 chrX 58883129 58883168 -103716762 + (TA)n Simple_repeat Simple_repeat 1 39 0 5606 214 43 21 chrX 58883168 58884450 -103715480 + L1MA5 LINE L1 2407 3737 -3828 2357 241 28 5 chrX 58884453 58885095 -103714835 + L1MA5 LINE L1 3772 4428 -3137 1848 202 55 21 chrX 58885096 58885572 -103714358 - LTR22B LTR ERVK 0 492 1 32648 97 12 6 chrX 58885572 58890054 -103709876 - HERVK22 LTR ERVK 0 6837 2327 5151 112 8 8 chrX 58890494 58891235 -103708695 - HERVK22 LTR ERVK -6096 741 1 1759 206 48 25 chrX 58891235 58891716 -103708214 - LTR22B LTR ERVK 0 492 1 7808 202 46 59 chrX 58891723 58892898 -103707032 + L1MA5 LINE L1 4431 5620 -1945 341 93 19 0 chrX 58892898 58892952 -103706978 + (TA)n Simple_repeat Simple_repeat 2 56 0 207 0 0 0 chrX 58892953 58892976 -103706954 + (GA)n Simple_repeat Simple_repeat 2 24 0 7808 202 46 59 chrX 58892976 58893558 -103706372 + L1MA5 LINE L1 5620 6208 -1357 2118 124 3 0 chrX 58893558 58893848 -103706082 + AluSg SINE Alu 2 292 -18 195 114 0 0 chrX 58893852 58893887 -103706043 + (TTAAA)n Simple_repeat Simple_repeat 2 36 0 7808 202 46 59 chrX 58893887 58894440 -103705490 + L1MA5 LINE L1 6211 6720 -845 315 113 0 0 chrX 58894440 58894493 -103705437 + (CA)n Simple_repeat Simple_repeat 2 54 0 7808 202 46 59 chrX 58894493 58894521 -103705409 + L1MA5 LINE L1 6720 6747 -818 26908 73 3 0 chrX 58894525 58898068 -103701862 + L1PA4 LINE L1 7 3559 -2587 11601 48 0 1 chrX 58898068 58900312 -103699618 + L1PA4 LINE L1 3926 6177 0 620 155 0 0 chrX 58900508 58900605 -103699325 - AluJ/FLAM SINE Alu -215 97 1 2135 135 3 31 chrX 58900842 58900873 -103699057 + L1MA5 LINE L1 6714 6744 -978 180 0 0 0 chrX 58900873 58900893 -103699037 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2135 135 3 31 chrX 58900893 58900935 -103698995 + L1MA5 LINE L1 6744 6786 -936 2131 111 6 35 chrX 58900935 58901250 -103698680 + AluSc SINE Alu 1 306 -3 2135 135 3 31 chrX 58901250 58901578 -103698352 + L1MA5 LINE L1 6786 7101 -621 873 215 239 0 chrX 58901573 58901866 -103698064 + L1MA5 LINE L1 7348 7710 -9 * 932 187 46 26 chrX 58901894 58902199 -103697731 + L1MDb LINE L1 1083 1393 -5016 * 1103 261 58 63 chrX 58902191 58902450 -103697480 + L1M4 LINE L1 4382 4641 -1505 2100 91 0 4 chrX 58902450 58902726 -103697204 - AluSg SINE Alu -4 306 32 1103 261 58 63 chrX 58902726 58903036 -103696894 + L1M4 LINE L1 4641 4950 -1196 352 97 0 16 chrX 58903036 58903098 -103696832 + L1MA5 LINE L1 6240 6300 0 1103 261 58 63 chrX 58903098 58903148 -103696782 + L1M4 LINE L1 4950 4999 -1147 249 139 0 0 chrX 58903160 58903203 -103696727 + (TA)n Simple_repeat Simple_repeat 2 44 0 271 232 0 42 chrX 58903206 58903301 -103696629 + L1MC4 LINE L1 6614 6704 -1338 319 210 0 0 chrX 58903301 58903363 -103696567 - L1MC4 LINE L1 -1341 6701 6640 1103 139 0 0 chrX 58903364 58903522 -103696408 - AluSp SINE Alu -9 304 147 381 49 59 137 chrX 58903523 58903579 -103696351 + L1P LINE L1 5273 5319 -849 2531 74 0 0 chrX 58903579 58903888 -103696042 + AluY SINE Alu 1 309 -2 381 49 59 137 chrX 58903888 58903933 -103695997 + L1P LINE L1 5319 5366 -802 4201 112 3 0 chrX 58903933 58904557 -103695373 + L1P LINE L1 1796 2421 -3725 658 223 27 0 chrX 58904601 58904749 -103695181 + MER3 DNA MER1_type 58 209 0 595 206 155 19 chrX 58905366 58905521 -103694409 + MER63A DNA MER1_type 1 176 -34 309 51 0 0 chrX 58905564 58905603 -103694327 + (TG)n Simple_repeat Simple_repeat 1 39 0 1771 202 34 32 chrX 58905839 58906275 -103693655 + MER31B LTR ERV1 20 456 -10 2951 194 36 66 chrX 58906320 58907074 -103692856 + MER41B-int LTR ERV1 10 740 -4196 1918 196 68 14 chrX 58907071 58907585 -103692345 + MER41B-int LTR ERV1 874 1415 -3521 * 1081 302 109 14 chrX 58907585 58908072 -103691858 - MER34 LTR ERV1 -2 540 8 871 249 58 40 chrX 58908074 58908138 -103691792 + MER41B-int LTR ERV1 1406 1467 -3469 1979 215 32 66 chrX 58908138 58908697 -103691233 + MER87 LTR ERV1 1 540 -1 871 249 58 40 chrX 58908697 58908781 -103691149 + MER41B-int LTR ERV1 1467 1548 -3388 1755 103 9 0 chrX 58908781 58909014 -103690916 + AluSp SINE Alu 1 235 -78 871 249 58 40 chrX 58909014 58909361 -103690569 + MER41B-int LTR ERV1 1548 1911 -3025 2122 95 3 40 chrX 58909375 58909679 -103690251 + AluSc SINE Alu 1 293 -16 3509 224 57 120 chrX 58909710 58911308 -103688622 + MER41B-int LTR ERV1 2808 4757 -179 550 110 0 0 chrX 58911308 58911381 -103688549 - MER41B LTR ERV1 -241 394 322 185 303 169 0 chrX 58911459 58911548 -103688382 - L2 LINE L2 -6 3266 3163 2316 95 6 9 chrX 58911548 58911875 -103688055 - MER41B LTR ERV1 -309 326 1 37 0 0 0 chrX 58913800 58913837 -103686093 + AT_rich Low_complexity Low_complexity 1 37 0 2373 239 52 33 chrX 58914069 58914607 -103685323 - L1ME1 LINE L1 -51 6115 5589 3698 157 16 2 chrX 58914607 58915233 -103684697 + MER41B LTR ERV1 1 635 0 2373 239 52 33 chrX 58915233 58915764 -103684166 - L1ME1 LINE L1 -577 5589 5032 2375 66 0 16 chrX 58915764 58916068 -103683862 + AluY SINE Alu 1 299 -12 2373 239 52 33 chrX 58916068 58916155 -103683775 - L1ME1 LINE L1 -1134 5032 4948 363 61 0 0 chrX 58916160 58916209 -103683721 - L1MA3 LINE L1 -463 5842 5794 1571 102 0 0 chrX 58916223 58916459 -103683471 + L1MA2 LINE L1 6068 6303 -1 3012 249 49 72 chrX 58916481 58916960 -103682970 - L1ME1 LINE L1 -1202 4944 4456 2204 75 3 11 chrX 58916960 58917267 -103682663 - AluY SINE Alu 0 305 1 3012 249 49 72 chrX 58917267 58918110 -103681820 - L1ME1 LINE L1 -1690 4456 3664 2107 178 30 2 chrX 58918110 58918543 -103681387 + LTR56 LTR ERV1 1 445 0 3012 249 49 72 chrX 58918543 58918868 -103681062 - L1ME1 LINE L1 -2482 3664 3333 2608 199 14 12 chrX 58918880 58919469 -103680461 - L1MB3 LINE L1 -15 6168 5579 6831 58 5 68 chrX 58919484 58921258 -103678672 + SVA Other Other 1 1386 0 280 229 14 0 chrX 58921519 58921589 -103678341 + HsTC2 DNA Tc2 3 73 -1825 234 164 10 144 chrX 58921627 58921731 -103678199 + LTR9 LTR ERV1 443 532 -80 616 157 33 0 chrX 58921742 58921863 -103678067 - L1MB3 LINE L1 -577 5591 5467 1768 183 128 54 chrX 58921863 58922403 -103677527 - LTR49 LTR ERV1 0 595 16 2449 261 19 21 chrX 58922408 58923179 -103676751 - L1MB3 LINE L1 -699 5481 4709 1333 235 26 7 chrX 58923179 58923481 -103676449 - AluJo SINE Alu -3 309 2 2449 261 19 21 chrX 58923481 58923745 -103676185 - L1MB3 LINE L1 -1471 4709 4446 976 196 52 131 chrX 58923772 58924267 -103675663 - MSTB2 LTR MaLR -1 456 1 1015 203 166 10 chrX 58924267 58924562 -103675368 - MSTB1-int LTR MaLR 0 1651 1311 655 124 0 0 chrX 58924569 58924666 -103675264 - L1PA16 LINE L1 -9 6157 6061 1325 130 0 45 chrX 58924690 58924936 -103674994 - MER57A-int LTR ERV1 0 7537 7303 278 214 31 41 chrX 58924938 58925036 -103674894 - LTR54B LTR ERV1 -337 161 65 10156 116 22 3 chrX 58925036 58926653 -103673277 - MER57A-int LTR ERV1 -1487 6050 4403 2135 173 14 0 chrX 58926628 58926993 -103672937 - MER57A-int LTR ERV1 -7167 370 1 * 2108 179 5 0 chrX 58927016 58927412 -103672518 - MER57A LTR ERV1 -5 398 1 370 318 23 0 chrX 58927414 58927543 -103672387 - MSTB1-int LTR MaLR -599 1052 921 1524 155 11 33 chrX 58927543 58927890 -103672040 + MER61C LTR ERV1 1 434 0 2301 248 43 74 chrX 58927898 58928021 -103671909 - MSTB1-int LTR MaLR -730 921 796 5528 58 26 13 chrX 58928021 58928777 -103671153 + MER4E LTR ERV1 1 766 0 2301 248 43 74 chrX 58928777 58929598 -103670332 - MSTB1-int LTR MaLR -855 796 6 290 243 28 35 chrX 58929584 58929601 -103670329 - L1MB3 LINE L1 -1709 4437 4421 * 1165 219 52 71 chrX 58929601 58930039 -103669891 - MSTB1 LTR MaLR -2 430 1 290 243 28 35 chrX 58930039 58930165 -103669765 - L1MB3 LINE L1 -1725 4421 4295 1477 276 40 28 chrX 58930165 58930357 -103669573 - L1MB3 LINE L1 -2449 3697 3509 2270 107 0 3 chrX 58930357 58930657 -103669273 - AluY SINE Alu -12 299 1 1477 276 40 28 chrX 58930657 58931162 -103668768 - L1MB3 LINE L1 -2637 3509 2988 3772 131 18 2 chrX 58931162 58931718 -103668212 - MER61E LTR ERV1 -4 565 1 1477 276 40 28 chrX 58931718 58931779 -103668151 - L1MB3 LINE L1 -3158 2988 2929 1817 283 11 15 chrX 58931939 58932727 -103667203 - L1MB3 LINE L1 -3188 2958 2174 4949 182 24 16 chrX 58932730 58933496 -103666434 - L1MA4A LINE L1 -7 6998 6240 2247 107 3 0 chrX 58933496 58933804 -103666126 + AluY SINE Alu 1 309 -2 4949 182 24 16 chrX 58933804 58934574 -103665356 - L1MA4A LINE L1 -765 6240 5451 1749 230 19 12 chrX 58934582 58934995 -103664935 - MSTB1 LTR MaLR -14 418 3 2362 228 22 4 chrX 58934997 58935339 -103664591 - L1MA4A LINE L1 -1392 5456 5121 2600 162 53 66 chrX 58935339 58935957 -103663973 + MER4B LTR ERV1 1 610 0 2362 228 22 4 chrX 58935957 58936298 -103663632 - L1MA4A LINE L1 -1727 5121 4761 1536 211 62 49 chrX 58936332 58936783 -103663147 + LTR2B LTR ERV1 34 490 0 2343 139 8 13 chrX 58936783 58937170 -103662760 + Harlequin LTR ERV1 1 385 -6511 765 92 17 0 chrX 58937166 58937286 -103662644 + Harlequin LTR ERV1 264 385 -6511 * 7621 63 14 43 chrX 58937281 58938472 -103661458 + Harlequin LTR ERV1 263 1419 -5477 * 37136 67 13 9 chrX 58938456 58943526 -103656404 + Harlequin LTR ERV1 1807 6896 0 1563 201 94 35 chrX 58943527 58943984 -103655946 + LTR2B LTR ERV1 7 490 0 2236 217 32 38 chrX 58943988 58944420 -103655510 - L1MA4A LINE L1 -2097 4751 4318 2288 98 3 0 chrX 58944420 58944716 -103655214 - AluY SINE Alu -14 297 1 2236 217 32 38 chrX 58944716 58944764 -103655166 - L1MA4A LINE L1 -2530 4318 4271 1913 109 40 65 chrX 58944764 58945085 -103654845 - AluSq SINE Alu 0 313 1 2236 217 32 38 chrX 58945085 58945313 -103654617 - L1MA4A LINE L1 -2577 4271 4046 2587 155 80 13 chrX 58945316 58945881 -103654049 - MER4B LTR ERV1 0 779 1 2825 236 70 10 chrX 58945916 58946915 -103653015 - L1MA4A LINE L1 -2852 3996 2938 255 244 22 0 chrX 58946949 58947039 -103652891 + L1MC4 LINE L1 6612 6703 -1339 180 111 0 0 chrX 58947040 58947067 -103652863 + (TA)n Simple_repeat Simple_repeat 1 27 0 407 161 21 0 chrX 58947067 58947160 -103652770 - L1MA4A LINE L1 -3950 2899 2805 21 82 0 0 chrX 58947272 58947321 -103652609 + AT_rich Low_complexity Low_complexity 1 49 0 235 330 43 53 chrX 58947447 58947729 -103652201 + L1M3b LINE L1 1364 1642 -5854 213 227 23 0 chrX 58948147 58948191 -103651739 + CT-rich Low_complexity Low_complexity 2 46 0 1007 225 111 17 chrX 58948965 58949628 -103650302 + L1M3b LINE L1 3342 4063 -3502 1956 157 15 22 chrX 58949633 58950042 -103649888 + L1M3b LINE L1 5341 5746 -1819 1312 81 0 23 chrX 58950044 58950253 -103649677 - AluSc SINE Alu 0 316 112 436 292 27 40 chrX 58950340 58950575 -103649355 - L1ME LINE L1 -461 5660 5427 207 0 0 0 chrX 58950683 58950706 -103649224 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 279 54 0 0 chrX 58950709 58950746 -103649184 + (TG)n Simple_repeat Simple_repeat 1 37 0 1778 263 57 26 chrX 58950898 58951899 -103648031 - LTR46-int LTR ERV1 -195 6790 6085 21586 202 21 24 chrX 58952222 58957768 -103642162 - LTR46-int LTR ERV1 -937 6048 670 1714 212 62 21 chrX 58957889 58958407 -103641523 - LTR46-int LTR ERV1 -6445 540 2 244 244 55 16 chrX 58958441 58958568 -103641362 - LTR46 LTR ERV1 -53 407 276 403 270 10 0 chrX 58958708 58958808 -103641122 - LTR46 LTR ERV1 -359 101 1 203 221 15 15 chrX 58959192 58959260 -103640670 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 23 0 0 0 chrX 58959331 58959354 -103640576 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 58959598 58959626 -103640304 + AT_rich Low_complexity Low_complexity 1 28 0 616 353 29 17 chrX 58959706 58960120 -103639810 + L1PA15-16 LINE L1 1 419 -6430 445 360 29 44 chrX 58960508 58960986 -103638944 + L1M2 LINE L1 727 1197 -5652 7920 237 57 18 chrX 58961073 58962268 -103637662 + L1M2 LINE L1 1479 2626 -4222 2569 53 0 0 chrX 58962268 58962570 -103637360 - AluY SINE Alu -9 302 1 7920 237 57 18 chrX 58962570 58963599 -103636331 + L1M2 LINE L1 2626 3614 -3234 396 0 0 0 chrX 58963599 58963643 -103636287 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 7920 237 57 18 chrX 58963643 58963750 -103636180 + L1M2 LINE L1 3614 3715 -3133 231 36 0 0 chrX 58963750 58963778 -103636152 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7920 237 57 18 chrX 58963778 58965418 -103634512 + L1M2 LINE L1 3715 5622 -1226 5250 210 47 38 chrX 58965438 58965718 -103634212 + L1PA15-16 LINE L1 1064 1340 -5509 195 100 0 0 chrX 58965718 58965748 -103634182 + (CTG)n Simple_repeat Simple_repeat 1 30 0 5250 210 47 38 chrX 58965748 58966002 -103633928 + L1PA15-16 LINE L1 1340 1590 -5259 4696 138 25 5 chrX 58966002 58966765 -103633165 + MER4E LTR ERV1 1 778 -1 5250 210 47 38 chrX 58966765 58968079 -103631851 + L1PA15-16 LINE L1 1590 2946 -3903 1155 198 51 0 chrX 58968086 58968339 -103631591 + L1PB4 LINE L1 5888 6153 -3 28 48 0 0 chrX 58968386 58968428 -103631502 + AT_rich Low_complexity Low_complexity 1 42 0 623 259 102 0 chrX 58968428 58968644 -103631286 - L1MB7 LINE L1 -17 6167 5930 1889 218 110 32 chrX 58968663 58969831 -103630099 - L1MB7 LINE L1 -317 5867 4590 462 194 93 65 chrX 58969886 58970025 -103629905 - MER21B LTR ERV1 -49 814 672 624 278 64 0 chrX 58970089 58970276 -103629654 - MER21B LTR ERV1 -191 672 474 36921 74 22 2 chrX 58970309 58976328 -103623602 - L1PA5 LINE L1 -5 6149 13 2273 300 19 46 chrX 58976341 58977152 -103622778 + L1PA13 LINE L1 1 789 -5998 3377 233 30 45 chrX 58977427 58978539 -103621391 + L1PA13 LINE L1 1289 2387 -4410 2015 134 23 54 chrX 58978539 58978926 -103621004 - THE1C LTR MaLR 0 375 1 3377 233 30 45 chrX 58978926 58979569 -103620361 + L1PA13 LINE L1 2387 3038 -3759 2339 236 39 3 chrX 58979585 58980270 -103619660 + L1PA13 LINE L1 3850 4559 -2238 1479 150 9 0 chrX 58980271 58980531 -103619399 - MER57A LTR ERV1 -129 305 15 468 241 0 0 chrX 58980549 58980661 -103619269 - MER57A-int LTR ERV1 -2 7535 7424 280 242 11 53 chrX 58980675 58980770 -103619160 - LTR54 LTR ERV1 -210 300 210 261 0 0 0 chrX 58980806 58980835 -103619095 + (A)n Simple_repeat Simple_repeat 1 29 0 510 173 58 0 chrX 58980872 58980976 -103618954 - LTR54 LTR ERV1 -387 123 14 5132 216 32 31 chrX 58980987 58982307 -103617623 - MER57A-int LTR ERV1 -392 7145 5825 446 147 13 0 chrX 58982637 58982712 -103617218 - MER57A-int LTR ERV1 -1716 5821 5746 202 150 25 0 chrX 58982718 58982758 -103617172 + A-rich Low_complexity Low_complexity 2 42 0 380 324 59 0 chrX 58983072 58983242 -103616688 - L3b LINE CR1 -118 1465 1286 28 29 0 0 chrX 58983939 58983974 -103615956 + AT_rich Low_complexity Low_complexity 1 35 0 4623 196 58 79 chrX 58984161 58986053 -103613877 - MER57-int LTR ERV1 -1587 4744 1925 432 110 0 0 chrX 58986371 58986444 -103613486 + L1PA5 LINE L1 5987 6059 -95 19243 52 4 3 chrX 58986448 58989041 -103610889 - L1P LINE L1 -2214 3932 1336 476 308 125 3 chrX 58989040 58989401 -103610529 - L1 LINE L1 -2445 3701 3297 * 1598 293 75 15 chrX 58989398 58990153 -103609777 - L1M4 LINE L1 -5737 805 5 2252 114 3 0 chrX 58990188 58990486 -103609444 + AluSp SINE Alu 1 299 -14 415 208 0 0 chrX 58990600 58990677 -103609253 - MER61A LTR ERV1 -266 77 1 2330 101 3 3 chrX 58990679 58991024 -103608906 - MER61A-int LTR ERV1 -3 5214 4870 228 35 0 0 chrX 58991024 58991053 -103608877 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 17361 115 23 16 chrX 58991054 58994370 -103605560 - MER61A-int LTR ERV1 -398 6066 1413 2702 161 50 22 chrX 58994373 58994919 -103605011 - MER61A-int LTR ERV1 -4654 563 3 1736 195 42 12 chrX 58994921 58995254 -103604676 - MER61A LTR ERV1 0 343 1 21 0 0 0 chrX 58995266 58995287 -103604643 + AT_rich Low_complexity Low_complexity 1 21 0 1611 272 54 48 chrX 58995473 58996586 -103603344 + L1MDb LINE L1 67 1172 -5234 1597 212 35 0 chrX 58996586 58996869 -103603061 - AluJb SINE Alu -19 293 1 1611 272 54 48 chrX 58996869 58996892 -103603038 + L1MDb LINE L1 1172 1193 -5213 1840 130 8 0 chrX 58996892 58997154 -103602776 + AluSq SINE Alu 43 306 -7 318 26 0 0 chrX 58997155 58997194 -103602736 + (CA)n Simple_repeat Simple_repeat 2 40 0 1611 272 54 48 chrX 58997194 58997469 -103602461 + L1MDb LINE L1 1192 1588 -4818 1515 201 55 3 chrX 58998347 58998656 -103601274 - Tigger1 DNA MER2_type -8 2410 2086 349 239 37 68 chrX 58998664 58998827 -103601103 + LTR4 LTR ERV1 1 158 -438 636 249 24 68 chrX 58999082 58999375 -103600555 + LTR4 LTR ERV1 317 596 0 3187 131 2 2 chrX 58999376 58999896 -103600034 - Tigger1 DNA MER2_type -326 2092 1573 528 125 0 0 chrX 58999896 58999976 -103599954 + AluS SINE Alu 1 80 -233 5519 234 32 43 chrX 59000009 59001928 -103598002 + L1 LINE L1 2520 4418 -1728 35071 94 8 8 chrX 59001941 59003149 -103596781 + L1PA6 LINE L1 11 1218 -4936 2501 71 0 0 chrX 59003149 59003446 -103596484 - AluY SINE Alu -14 297 1 35071 94 8 8 chrX 59003446 59008383 -103591547 + L1PA6 LINE L1 1218 6152 -2 4973 185 16 16 chrX 59008421 59010181 -103589749 + L1PA16 LINE L1 4408 6161 -5 249 217 53 86 chrX 59010200 59010266 -103589664 - MLT1K LTR MaLR 0 588 521 2170 131 0 0 chrX 59010266 59010563 -103589367 - AluSx SINE Alu -15 297 1 249 217 53 86 chrX 59010563 59010648 -103589282 - MLT1K LTR MaLR -67 521 442 2132 109 0 0 chrX 59011085 59011359 -103588571 - AluSp SINE Alu -39 274 1 3049 155 73 38 chrX 59012021 59013018 -103586912 + L1M1 LINE L1 243 1770 -5795 612 81 0 0 chrX 59013018 59013105 -103586825 + (GA)n Simple_repeat Simple_repeat 2 88 0 3049 155 73 38 chrX 59013105 59013171 -103586759 + L1M1 LINE L1 1770 1832 -5733 202 343 0 0 chrX 59213332 59213402 -103386528 + L3b LINE CR1 1168 1237 -346 182 244 22 0 chrX 59213529 59213574 -103386356 - L3 LINE CR1 -254 1323 1278 337 262 84 0 chrX 59213678 59213785 -103386145 - MER103 DNA DNA -9 157 42 13227 89 10 9 chrX 59213786 59219883 -103380047 - L1PA6 LINE L1 0 6154 11 2361 171 49 74 chrX 59220824 59221338 -103378592 - MLT1D LTR MaLR 0 505 5 210 213 64 0 chrX 59222489 59222536 -103377394 + L2 LINE L2 2709 2758 -556 310 354 95 49 chrX 59222602 59223012 -103376918 + L2 LINE L2 2828 3256 -16 354 293 158 23 chrX 59224208 59224423 -103375507 + L3b LINE CR1 1204 1447 -136 249 325 13 40 chrX 59225054 59225205 -103374725 + (TG)n Simple_repeat Simple_repeat 1 147 0 313 341 120 18 chrX 59226749 59227062 -103372868 + L2 LINE L2 2695 3052 -220 292 268 0 14 chrX 59227205 59227276 -103372654 - MIR SINE MIR -160 102 33 877 222 0 0 chrX 59227286 59227448 -103372482 - FRAM SINE Alu -15 161 1 390 340 70 37 chrX 59228723 59228967 -103370963 - MIR SINE MIR 0 262 11 415 291 16 48 chrX 59229050 59229239 -103370691 + L1ME3A LINE L1 5962 6144 -26 180 314 0 0 chrX 59229772 59229823 -103370107 - L3 LINE CR1 -2 1575 1525 292 306 20 10 chrX 59229998 59230096 -103369834 - MIR SINE MIR -58 150 52 5381 174 28 12 chrX 59230225 59230295 -103369635 + L1MB3 LINE L1 4386 4453 -1730 2127 122 0 44 chrX 59230295 59230616 -103369314 + AluSx SINE Alu 1 307 -5 5381 174 28 12 chrX 59230616 59232325 -103367605 + L1MB3 LINE L1 4453 6183 0 252 299 0 0 chrX 59232799 59232866 -103367064 + MIR SINE MIR 183 249 -13 364 248 83 41 chrX 59233079 59233224 -103366706 - L2 LINE L2 -5 3308 3158 464 287 0 73 chrX 59233230 59233491 -103366439 + L1P LINE L1 4852 5093 -1053 6426 103 13 61 chrX 59233497 59234939 -103364991 - L1PA11 LINE L1 0 6890 4128 2345 143 55 30 chrX 59234933 59235372 -103364558 - L1PA11 LINE L1 -5704 1159 710 * 1213 122 16 0 chrX 59235408 59235597 -103364333 - L1PA11 LINE L1 -6668 195 4 208 135 0 0 chrX 59236074 59236111 -103363819 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 317 289 47 23 chrX 59236272 59236400 -103363530 - MIR SINE MIR -19 243 113 3820 145 47 34 chrX 59238138 59238840 -103361090 - MER50 LTR ERV1 -23 711 1 9702 25 5 0 chrX 59238944 59240313 -103359617 - L1PA3 LINE L1 -528 5627 4255 5121 11 0 0 chrX 59240313 59240848 -103359082 + L1PA3 LINE L1 5617 6155 0 256 305 42 11 chrX 59241247 59241342 -103358588 + L2 LINE L2 2952 3049 -223 224 321 68 68 chrX 59241638 59241890 -103358040 - L2 LINE L2 -690 2624 2373 2490 81 0 7 chrX 59242294 59242604 -103357326 - AluSc SINE Alu 0 309 2 279 264 0 0 chrX 59242859 59242931 -103356999 + MIR SINE MIR 191 262 0 217 218 0 126 chrX 59243024 59243111 -103356819 + MIR SINE MIR 117 192 -70 338 329 21 7 chrX 59244402 59244545 -103355385 - MIR3 SINE MIR -3 205 61 212 200 0 0 chrX 59244875 59244925 -103355005 + L2 LINE L2 3097 3146 -167 * 369 331 64 61 chrX 59244922 59245315 -103354615 - L2 LINE L2 -76 3237 2844 628 242 121 0 chrX 59245387 59245544 -103354386 - MIR SINE MIR -76 186 11 * 969 278 0 16 chrX 59245537 59245792 -103354138 - L2 LINE L2 -521 2793 2543 184 355 21 32 chrX 59245816 59245909 -103354021 + L2 LINE L2 3087 3178 -94 535 326 37 18 chrX 59245931 59246149 -103353781 - MIR SINE MIR -39 223 2 206 281 0 35 chrX 59246527 59246584 -103353346 + MIR SINE MIR 77 131 -77 244 293 0 13 chrX 59246665 59246740 -103353190 + CT-rich Low_complexity Low_complexity 1 74 0 765 170 0 0 chrX 59246927 59247039 -103352891 + FLAM_C SINE Alu 2 113 -30 198 128 0 0 chrX 59247048 59247087 -103352843 + (GA)n Simple_repeat Simple_repeat 2 40 0 371 293 19 9 chrX 59247114 59247220 -103352710 + MER5B DNA MER1_type 2 108 -70 320 255 35 138 chrX 59247769 59247914 -103352016 - L2 LINE L2 0 3272 3143 2034 197 8 6 chrX 59247952 59248313 -103351617 + MLT1A1 LTR MaLR 1 362 -3 238 231 0 31 chrX 59248349 59248414 -103351516 - HsTC2 DNA Tc2 -1829 69 7 374 286 0 0 chrX 59248414 59248519 -103351411 + MIR SINE MIR 158 262 0 1972 47 0 4 chrX 59248874 59249108 -103350822 - AluY SINE Alu -9 302 70 361 262 43 92 chrX 59249451 59249592 -103350338 + MIR3 SINE MIR 8 141 -67 428 284 40 54 chrX 59250193 59250341 -103349589 - MIR3 SINE MIR -5 203 58 15969 71 5 4 chrX 59251106 59253879 -103346051 - L1PA6 LINE L1 0 6154 3378 221 56 0 28 chrX 59253879 59253915 -103346015 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5153 35 5 0 chrX 59253920 59254480 -103345450 - L1PA3 LINE L1 -19 6136 5564 280 0 0 0 chrX 59254480 59254510 -103345420 + L1PA3 LINE L1 5538 5567 -588 * 21342 131 13 17 chrX 59254498 59257907 -103342023 - L1PA6 LINE L1 -2742 3404 11 264 286 39 13 chrX 59257951 59258028 -103341902 - MIR SINE MIR -167 95 17 605 321 56 16 chrX 59258093 59258345 -103341585 - MIR SINE MIR 0 262 1 258 404 54 0 chrX 59258575 59258741 -103341189 + L3 LINE CR1 1055 1229 -348 2116 107 17 7 chrX 59258763 59259079 -103340851 + AluSx SINE Alu 1 312 0 352 345 101 4 chrX 59259199 59259437 -103340493 + L1ME LINE L1 5341 5601 -563 1447 289 85 16 chrX 59259448 59260280 -103339650 - L1M4 LINE L1 -3020 3126 2237 21 0 0 0 chrX 59260377 59260398 -103339532 + AT_rich Low_complexity Low_complexity 1 21 0 1604 179 69 0 chrX 59260423 59260713 -103339217 - AluJb SINE Alu -2 310 1 3342 165 7 55 chrX 59260761 59261342 -103338588 + MLT2B3 LTR ERVL 2 554 0 1768 255 27 8 chrX 59261342 59261863 -103338067 + HERVL-B3 LTR ERVL 1 531 -5123 2630 106 17 0 chrX 59261863 59262212 -103337718 - THE1A LTR MaLR 0 355 1 2570 108 25 0 chrX 59262212 59262574 -103337356 - THE1A-int LTR MaLR 0 1580 1210 * 2776 151 5 45 chrX 59262569 59262843 -103337087 - L1 LINE L1 -1493 4653 4370 212 77 26 0 chrX 59262843 59262882 -103337048 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 2027 133 0 0 chrX 59262884 59263163 -103336767 - AluSc SINE Alu -30 279 1 2776 151 5 45 chrX 59263163 59263231 -103336699 - L1 LINE L1 -1777 4369 4300 896 131 0 51 chrX 59263231 59263368 -103336562 + FLAM_C SINE Alu 1 130 -3 2776 151 5 45 chrX 59263368 59263576 -103336354 - L1 LINE L1 -1846 4300 4121 1623 172 72 39 chrX 59263579 59263940 -103335990 + THE1C LTR MaLR 3 375 0 830 147 6 0 chrX 59263941 59264098 -103335832 + THE1C-int LTR MaLR 3 160 -1491 931 364 78 9 chrX 59264151 59264763 -103335167 - L2 LINE L2 -243 3029 2374 242 308 159 28 chrX 59265238 59265345 -103334585 + L2 LINE L2 3143 3263 -9 208 211 0 0 chrX 59265354 59265392 -103334538 + MIR SINE MIR 81 118 -90 2191 104 0 10 chrX 59266115 59266412 -103333518 + AluSg SINE Alu 1 294 -16 346 280 40 0 chrX 59266719 59266819 -103333111 - MIR SINE MIR -71 137 34 259 227 200 0 chrX 59267396 59267471 -103332459 + MIR SINE MIR 52 141 -121 1739 188 7 7 chrX 59268309 59268617 -103331313 + AluJo SINE Alu 1 308 -4 2010 110 43 0 chrX 59269409 59269691 -103330239 + AluSq SINE Alu 1 294 -19 500 262 8 0 chrX 59269708 59269830 -103330100 - MIR SINE MIR 0 262 140 957 158 0 0 chrX 59269892 59270031 -103329899 - FRAM SINE Alu -18 158 20 261 317 67 43 chrX 59270164 59270555 -103329375 + L1ME LINE L1 5483 5882 -239 1044 140 70 48 chrX 59271273 59271414 -103328516 - L1M4 LINE L1 -422 5762 5613 2396 57 7 3 chrX 59271414 59271712 -103328218 - AluY SINE Alu -12 299 1 1044 140 70 48 chrX 59271712 59271798 -103328132 - L1M4 LINE L1 -571 5613 5530 426 255 10 49 chrX 59271792 59271996 -103327934 - L1M4c LINE L1 -4164 2220 2025 * 280 214 48 69 chrX 59272072 59272217 -103327713 - L1M4c LINE L1 -4543 1841 1700 471 18 0 0 chrX 59272220 59272276 -103327654 + (TC)n Simple_repeat Simple_repeat 2 57 0 327 146 0 0 chrX 59272276 59272331 -103327599 + (TA)n Simple_repeat Simple_repeat 1 55 0 3910 188 18 41 chrX 59272535 59272619 -103327311 - L1MB5 LINE L1 -8 6166 6082 1836 171 4 0 chrX 59272619 59272923 -103327007 + AluJb SINE Alu 1 305 0 3910 188 18 41 chrX 59272923 59273702 -103326228 - L1MB5 LINE L1 -92 6082 5322 1561 189 20 20 chrX 59273702 59273999 -103325931 - AluSx SINE Alu -15 297 1 3910 188 18 41 chrX 59273999 59274138 -103325792 - L1MB5 LINE L1 -852 5322 5181 744 248 0 0 chrX 59274147 59274292 -103325638 - FRAM SINE Alu -38 138 1 3470 217 71 35 chrX 59274292 59275425 -103324505 - L1MB5 LINE L1 -956 5190 4018 8269 161 10 4 chrX 59275425 59277729 -103322201 - L1PA11 LINE L1 -2 7610 5297 234 0 0 0 chrX 59277735 59277761 -103322169 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 705 132 0 0 chrX 59277762 59277868 -103322062 - L1PB1 LINE L1 -14 6853 6748 16068 169 29 12 chrX 59277870 59280839 -103319091 - L1PB1 LINE L1 -212 6655 3739 243 0 0 0 chrX 59280839 59280866 -103319064 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 16068 169 29 12 chrX 59280866 59282579 -103317351 - L1PB1 LINE L1 -3128 3739 2057 2320 93 0 3 chrX 59282579 59282880 -103317050 + AluY SINE Alu 1 300 -11 16068 169 29 12 chrX 59282880 59284734 -103315196 - L1PB1 LINE L1 -4810 2057 1 11321 230 24 22 chrX 59284736 59289112 -103310818 - L1PA11 LINE L1 -2285 5299 379 4289 105 28 31 chrX 59289112 59289758 -103310172 - LTR9B LTR ERV1 0 644 1 11321 230 24 22 chrX 59289758 59290132 -103309798 - L1PA11 LINE L1 -7205 379 7 292 114 0 0 chrX 59290144 59290188 -103309742 - Alu SINE Alu -13 289 246 286 185 48 82 chrX 59290201 59290347 -103309583 - L1M4c LINE L1 -2123 4834 4694 1665 157 194 50 chrX 59290390 59290869 -103309061 - LTR10A LTR ERV1 -61 548 1 5215 252 15 24 chrX 59290872 59292375 -103307555 - LTR10A-int LTR ERV1 -4 6645 5156 7207 102 56 43 chrX 59292453 59294633 -103305297 - Harlequin LTR ERV1 -3924 2972 718 617 248 84 95 chrX 59294822 59295548 -103304382 - Harlequin LTR ERV1 -5931 718 1 1570 148 59 73 chrX 59295558 59295930 -103304000 - LTR10A LTR ERV1 -62 547 181 241 251 145 63 chrX 59295932 59296139 -103303791 - LTR10A LTR ERV1 -374 235 12 4927 177 58 4 chrX 59296170 59297314 -103302616 - Tigger3b DNA MER2_type 0 1231 1 13007 34 0 0 chrX 59297367 59299699 -103300231 - L1PA3 LINE L1 -3 6152 3821 22941 46 1 0 chrX 59299699 59302699 -103297231 + L1PA3 LINE L1 819 3819 -2327 2469 224 49 133 chrX 59302696 59302898 -103297032 - L1M4c LINE L1 -2354 4603 4386 * 1932 130 3 77 chrX 59302898 59303222 -103296708 - AluSx SINE Alu -12 300 1 2469 224 49 133 chrX 59303222 59303784 -103296146 - L1M4c LINE L1 -2571 4386 3778 824 222 52 0 chrX 59303784 59303978 -103295952 - MLT1B LTR MaLR 0 390 187 2469 224 49 133 chrX 59303978 59304413 -103295517 - L1M4c LINE L1 -3179 3778 3454 1960 145 7 3 chrX 59304413 59304702 -103295228 + AluSx SINE Alu 5 294 -18 2469 224 49 133 chrX 59304702 59305236 -103294694 - L1M4c LINE L1 -3503 3454 2877 7617 214 25 26 chrX 59305237 59307229 -103292701 - L1PA15 LINE L1 0 6816 4823 2439 110 8 31 chrX 59307229 59307612 -103292318 - THE1C LTR MaLR 0 375 2 7617 214 25 26 chrX 59307612 59310029 -103289901 - L1PA15 LINE L1 -1993 4823 2309 1739 236 5 5 chrX 59310033 59310402 -103289528 - L1PA15 LINE L1 -6418 369 1 25 0 0 0 chrX 59310660 59310685 -103289245 + AT_rich Low_complexity Low_complexity 1 25 0 307 290 101 43 chrX 59310713 59310920 -103289010 - L1M4c LINE L1 -4328 2810 2592 1671 285 65 20 chrX 59311097 59311877 -103288053 - L1M4c LINE L1 -4574 2564 1583 2114 196 35 7 chrX 59311877 59312341 -103287589 - L1PB4 LINE L1 -2 6154 5678 1671 285 65 20 chrX 59312341 59312578 -103287352 - L1M4c LINE L1 -5555 1583 1358 180 0 0 0 chrX 59312572 59312592 -103287338 + (TTTTTA)n Simple_repeat Simple_repeat 1 20 0 * 800 142 89 18 chrX 59312667 59312836 -103287094 - MER30B DNA MER1_type -4 186 6 2872 275 124 34 chrX 59312841 59313246 -103286684 - L1M4c LINE L1 -5498 1361 994 2004 98 11 0 chrX 59313246 59313511 -103286419 - AluSg1 SINE Alu -17 292 25 2872 275 124 34 chrX 59313511 59314354 -103285576 - L1M4c LINE L1 -5865 994 1 9369 183 7 17 chrX 59314450 59316059 -103283871 - L1PB1 LINE L1 -2 6149 4525 2030 135 29 22 chrX 59316059 59316370 -103283560 - AluSq SINE Alu 0 313 1 9369 183 7 17 chrX 59316370 59317430 -103282500 - L1PB1 LINE L1 -1626 4525 3456 2214 84 0 7 chrX 59317430 59317756 -103282174 - AluY SINE Alu 0 324 1 9369 183 7 17 chrX 59317756 59317972 -103281958 - L1PB1 LINE L1 -2695 3456 3239 2207 128 0 0 chrX 59317972 59318276 -103281654 - AluSg SINE Alu -6 304 1 9369 183 7 17 chrX 59318276 59318605 -103281325 - L1PB1 LINE L1 -2912 3239 2968 180 77 0 0 chrX 59318688 59318714 -103281216 + (T)n Simple_repeat Simple_repeat 1 26 0 299 113 0 38 chrX 59320486 59320539 -103279391 - L1ME LINE L1 -448 5673 5623 380 353 42 12 chrX 59320821 59320988 -103278942 + MIR SINE MIR 32 203 -59 1272 178 0 5 chrX 59321006 59321242 -103278688 + AluJo SINE Alu 84 318 0 2103 127 27 14 chrX 59321717 59322086 -103277844 + L1MA3 LINE L1 5932 6305 0 250 218 0 23 chrX 59322165 59322252 -103277678 - L1MC4 LINE L1 -1344 6698 6614 817 249 96 25 chrX 59322272 59322721 -103277209 - L1ME4a LINE L1 -157 5964 5484 1758 142 7 14 chrX 59322827 59323108 -103276822 + AluJo SINE Alu 13 291 -21 1502 338 62 12 chrX 59323127 59323850 -103276080 + L3 LINE CR1 818 1576 -1 334 200 15 0 chrX 59323975 59324040 -103275890 - MER5A DNA MER1_type -80 109 44 706 220 26 21 chrX 59324057 59324248 -103275682 + MER106A DNA MER1_type 1 192 -44 602 277 23 17 chrX 59324293 59324470 -103275460 - MER5B DNA MER1_type 0 178 1 2269 128 12 2 chrX 59324759 59325162 -103274768 - L1P4 LINE L1 -541 5627 5221 390 169 0 0 chrX 59325168 59325245 -103274685 - L1 LINE L1 -1290 4856 4780 196 371 0 0 chrX 59325276 59325346 -103274584 + L2 LINE L2 3194 3263 -9 435 286 43 38 chrX 59325936 59326121 -103273809 - MER5A DNA MER1_type -1 188 3 2592 104 3 3 chrX 59326678 59327042 -103272888 - THE1B LTR MaLR 0 364 1 1988 159 3 0 chrX 59327089 59327384 -103272546 - AluSx SINE Alu -16 296 1 19757 49 3 1 chrX 59327507 59330768 -103269162 + L1PA5 LINE L1 2887 6151 -3 448 311 66 13 chrX 59330917 59331068 -103268862 + MIR SINE MIR 31 189 -73 252 204 74 0 chrX 59331066 59331120 -103268810 - L2 LINE L2 0 3313 3256 * 358 267 0 0 chrX 59331125 59331200 -103268730 + MER5A DNA MER1_type 4 78 -111 456 181 11 11 chrX 59331472 59331566 -103268364 - Charlie8 DNA MER1_type -2203 214 121 552 240 169 0 chrX 59331649 59331803 -103268127 + MER5A DNA MER1_type 10 189 0 * 617 209 25 43 chrX 59331803 59331958 -103267972 - L2 LINE L2 -52 3261 3110 360 217 21 153 chrX 59331966 59332201 -103267729 - MLT1H1 LTR MaLR -214 376 173 202 188 83 0 chrX 59332201 59332249 -103267681 - L2 LINE L2 -3 3310 3259 394 273 16 50 chrX 59332259 59332436 -103267494 - MLT1H1 LTR MaLR -382 173 3 696 332 40 7 chrX 59332436 59332757 -103267173 - L2 LINE L2 -276 3037 2697 503 294 56 42 chrX 59332766 59333126 -103266804 + L1MC4 LINE L1 7528 7892 -150 198 0 0 0 chrX 59333135 59333157 -103266773 + (TG)n Simple_repeat Simple_repeat 2 23 0 190 238 24 0 chrX 59333296 59333338 -103266592 + L2 LINE L2 3261 3303 -10 183 305 68 0 chrX 59333440 59333499 -103266431 + MIR SINE MIR 89 151 -57 479 324 55 6 chrX 59333856 59334038 -103265892 - L3 LINE CR1 -91 1486 1296 205 200 50 0 chrX 59335389 59335449 -103264481 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 208 223 0 128 chrX 59335449 59335543 -103264387 + MIR SINE MIR 20 101 -107 534 285 42 26 chrX 59335725 59335918 -103264012 + MIR3 SINE MIR 10 205 -3 202 298 18 0 chrX 59335975 59336032 -103263898 - L2 LINE L2 -246 3067 3010 245 312 129 0 chrX 59336105 59336198 -103263732 + MIR SINE MIR 1 105 -157 416 279 45 19 chrX 59337169 59337323 -103262607 - MIR3 SINE MIR -13 195 38 324 189 0 54 chrX 59337339 59337413 -103262517 - MER113 DNA MER1_type? 0 521 452 242 228 0 0 chrX 59337510 59337567 -103262363 - MER113 DNA MER1_type? -464 57 1 533 260 55 28 chrX 59337579 59337760 -103262170 + MIR SINE MIR 28 213 -49 23 33 0 0 chrX 59337766 59337796 -103262134 + AT_rich Low_complexity Low_complexity 1 30 0 9814 75 11 12 chrX 59337796 59339125 -103260805 - SVA Other Other -3 1383 57 571 24 0 36 chrX 59339125 59339208 -103260722 + (GGGAGA)n Simple_repeat Simple_repeat 5 84 0 1275 209 40 7 chrX 59339314 59339591 -103260339 + MLT1E LTR MaLR 306 591 -2 924 210 25 89 chrX 59339597 59339911 -103260019 + L1ME2 LINE L1 5841 6134 -30 588 115 21 0 chrX 59340032 59340128 -103259802 - Tigger1 DNA MER2_type -180 2238 2141 6262 84 13 1 chrX 59340128 59341928 -103258002 - L1PA13 LINE L1 -19 6144 4338 270 0 0 0 chrX 59342326 59342356 -103257574 + (CA)n Simple_repeat Simple_repeat 1 30 0 852 222 51 21 chrX 59342718 59342952 -103256978 + MLT1G LTR MaLR 342 582 -8 201 336 142 18 chrX 59342956 59343069 -103256861 + L2 LINE L2 3142 3268 -4 182 391 0 0 chrX 59343649 59343713 -103256217 + L2 LINE L2 2560 2623 -691 249 271 12 24 chrX 59343916 59344001 -103255929 - L2 LINE L2 0 3313 3230 383 239 23 0 chrX 59344424 59344512 -103255418 - MIR SINE MIR -89 173 84 300 27 0 0 chrX 59344840 59344877 -103255053 + (TG)n Simple_repeat Simple_repeat 2 38 0 307 352 83 7 chrX 59345075 59345220 -103254710 + MIR3 SINE MIR 20 175 -33 316 264 55 0 chrX 59345958 59346049 -103253881 + MIR SINE MIR 50 145 -63 6192 94 23 0 chrX 59346237 59347646 -103252284 + L1PA10 LINE L1 4388 5838 -330 315 0 0 0 chrX 59347646 59347681 -103252249 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 6192 94 23 0 chrX 59347681 59348006 -103251924 + L1PA10 LINE L1 5838 6154 -14 252 263 118 0 chrX 59348057 59348133 -103251797 + MIR3 SINE MIR 102 186 -22 197 309 0 0 chrX 59348100 59348142 -103251788 + L3 LINE CR1 1526 1567 -10 * 212 294 98 54 chrX 59348167 59348259 -103251671 - L2 LINE L2 -44 3228 3133 290 200 30 65 chrX 59349713 59349825 -103250105 - MIR SINE MIR -69 139 50 210 313 0 15 chrX 59349868 59349935 -103249995 + CT-rich Low_complexity Low_complexity 1 66 0 238 282 118 9 chrX 59350988 59351098 -103248832 - MIR SINE MIR -62 146 25 2186 151 0 0 chrX 59351307 59351619 -103248311 - AluSx SINE Alu 0 312 1 228 135 0 0 chrX 59351856 59351893 -103248037 + (TA)n Simple_repeat Simple_repeat 2 38 0 716 202 56 39 chrX 59351896 59352074 -103247856 - MIR SINE MIR -56 206 26 211 263 0 0 chrX 59352656 59352694 -103247236 - L2 LINE L2 -22 3291 3254 207 0 0 0 chrX 59353028 59353051 -103246879 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 692 247 53 32 chrX 59353219 59353502 -103246428 + L1ME4a LINE L1 5761 6049 -72 292 223 41 134 chrX 59354216 59354530 -103245400 - L1ME4a LINE L1 -6 6115 5831 521 287 113 7 chrX 59354813 59355123 -103244807 - L1MC4a LINE L1 -1886 5922 5580 377 189 53 89 chrX 59355224 59355393 -103244537 - L1MC5 LINE L1 -48 7913 7751 587 274 83 10 chrX 59355397 59355690 -103244240 - L1MC4a LINE L1 -509 5612 5296 375 269 71 76 chrX 59355821 59356018 -103243912 - L2 LINE L2 -3 3310 3115 208 331 8 0 chrX 59356449 59356570 -103243360 + (CAA)n Simple_repeat Simple_repeat 1 122 0 858 293 28 4 chrX 59357245 59357498 -103242432 - L3 LINE CR1 -456 1121 863 312 27 0 0 chrX 59357500 59357537 -103242393 + (TG)n Simple_repeat Simple_repeat 2 38 0 291 352 85 13 chrX 59358514 59358697 -103241233 - MIR SINE MIR -54 208 16 1970 163 3 40 chrX 59359028 59359408 -103240522 - MLT1B LTR MaLR 0 390 25 250 326 65 91 chrX 59360100 59360330 -103239600 + L2 LINE L2 2836 3059 -213 207 217 133 17 chrX 59360457 59360517 -103239413 + L2 LINE L2 3205 3271 -1 1273 194 5 0 chrX 59360590 59360807 -103239123 - AluJb SINE Alu -10 302 85 471 264 101 111 chrX 59361779 59362185 -103237745 - L2 LINE L2 -3 3310 2909 1785 163 7 4 chrX 59362339 59362616 -103237314 - AluJb SINE Alu -12 300 23 204 415 0 0 chrX 59362693 59362775 -103237155 + MIR3 SINE MIR 106 187 -21 * 218 364 10 50 chrX 59362774 59362873 -103237057 - MIR3 SINE MIR -41 167 73 288 0 0 0 chrX 59363314 59363346 -103236584 + (CTG)n Simple_repeat Simple_repeat 1 32 0 197 192 0 19 chrX 59363358 59363410 -103236520 + CT-rich Low_complexity Low_complexity 2 52 0 205 242 22 11 chrX 59363542 59363633 -103236297 + A-rich Low_complexity Low_complexity 4 95 0 320 315 4 90 chrX 59364735 59364872 -103235058 - MIR SINE MIR -61 147 20 315 0 0 0 chrX 59364929 59364964 -103234966 + (TG)n Simple_repeat Simple_repeat 2 36 0 252 73 0 49 chrX 59364987 59365028 -103234902 + MER39 LTR ERV1 77 115 -592 207 0 0 0 chrX 59365035 59365058 -103234872 + (TG)n Simple_repeat Simple_repeat 2 24 0 4232 178 52 42 chrX 59365079 59365904 -103234026 + MER21A LTR ERV1 99 931 0 2242 110 3 0 chrX 59366208 59366509 -103233421 + AluSg SINE Alu 1 302 -8 385 359 70 36 chrX 59366770 59367099 -103232831 - L2 LINE L2 -8 3264 2925 202 388 0 0 chrX 59367207 59367305 -103232625 - L2 LINE L2 -532 2782 2685 207 317 134 0 chrX 59367982 59368064 -103231866 - L2 LINE L2 -8 3264 3172 210 333 12 0 chrX 59368715 59368799 -103231131 + L3b LINE CR1 1312 1396 -187 457 348 86 0 chrX 59368973 59369160 -103230770 + MIR SINE MIR 51 253 -9 524 42 14 0 chrX 59369731 59369802 -103230128 + (TA)n Simple_repeat Simple_repeat 1 72 0 214 190 38 63 chrX 59369807 59369965 -103229965 + (TATAA)n Simple_repeat Simple_repeat 1 154 0 233 268 0 0 chrX 59370156 59370212 -103229718 + L2 LINE L2 3180 3235 -78 324 271 36 84 chrX 59370254 59370325 -103229605 - MIR3 SINE MIR -16 192 119 2701 121 51 14 chrX 59370325 59370738 -103229192 + MSTA LTR MaLR 1 428 0 324 271 36 84 chrX 59370738 59370832 -103229098 - MIR3 SINE MIR -89 119 35 459 219 80 20 chrX 59370977 59371128 -103228802 - L2 LINE L2 -5 3308 3149 250 245 0 0 chrX 59371274 59371323 -103228607 - L2 LINE L2 -84 3229 3181 567 272 89 6 chrX 59371477 59371657 -103228273 + MIR SINE MIR 57 251 -11 2340 159 64 9 chrX 59372195 59372649 -103227281 - L1MA7 LINE L1 0 6291 5813 1006 128 27 0 chrX 59372649 59372798 -103227132 - FAM SINE Alu -16 169 17 21 0 0 0 chrX 59372835 59372856 -103227074 + AT_rich Low_complexity Low_complexity 1 21 0 626 140 4 0 chrX 59372929 59373037 -103226893 + LTR23 LTR ERV1 320 435 -10 640 180 14 29 chrX 59373489 59373628 -103226302 + MIR SINE MIR 126 262 0 314 340 100 7 chrX 59373789 59373939 -103225991 + L2 LINE L2 2883 3046 -226 704 341 83 15 chrX 59374051 59374572 -103225358 + L2 LINE L2 2748 3313 0 585 222 24 16 chrX 59374581 59374707 -103225223 - MIR SINE MIR -63 145 19 197 279 0 0 chrX 59374762 59374805 -103225125 + L2 LINE L2 3137 3179 -93 1087 187 150 7 chrX 59374806 59375092 -103224838 + MER33 DNA MER1_type 1 316 -8 194 309 135 56 chrX 59375682 59375860 -103224070 - L2 LINE L2 -54 3218 3027 340 259 29 72 chrX 59376080 59376219 -103223711 - MIR3 SINE MIR -61 147 15 337 298 258 0 chrX 59377001 59377152 -103222778 - MIR3 SINE MIR -8 200 11 504 244 144 27 chrX 59377546 59377770 -103222160 + MIR SINE MIR 5 251 -11 1073 211 17 0 chrX 59377841 59378016 -103221914 + MER45A DNA AcHobo 1 178 0 325 302 134 17 chrX 59378069 59378248 -103221682 + MIR3 SINE MIR 1 200 -8 428 307 0 47 chrX 59378895 59379022 -103220908 + MIR SINE MIR 30 150 -58 424 213 219 43 chrX 59379248 59379412 -103220518 - MIR3 SINE MIR -1 207 15 293 304 61 49 chrX 59380261 59380407 -103219523 - MIR SINE MIR -63 145 37 314 318 16 16 chrX 59381061 59381190 -103218740 + MIR3 SINE MIR 76 204 -4 844 337 12 4 chrX 59381299 59381548 -103218382 - MIR SINE MIR -4 258 8 266 336 103 0 chrX 59382748 59382864 -103217066 + L2 LINE L2 3143 3270 -2 612 227 13 7 chrX 59383046 59383200 -103216730 + MER103 DNA DNA 9 163 -3 296 298 145 8 chrX 59383499 59383630 -103216300 + MIR3 SINE MIR 28 176 -32 261 0 0 0 chrX 59384284 59384313 -103215617 + (CA)n Simple_repeat Simple_repeat 1 29 0 278 298 158 0 chrX 59386651 59386765 -103213165 + L2 LINE L2 3136 3267 -5 229 314 69 39 chrX 59386869 59386971 -103212959 - L2 LINE L2 -497 2817 2713 196 267 0 0 chrX 59388726 59388771 -103211159 + MIR SINE MIR 46 90 -118 541 204 0 0 chrX 59388771 59388859 -103211071 + MLT1D LTR MaLR 1 88 -417 * 1253 209 17 42 chrX 59388856 59389143 -103210787 + MLT1D LTR MaLR 226 505 0 335 248 88 18 chrX 59389143 59389256 -103210674 + MIR3 SINE MIR 86 206 -2 188 154 26 51 chrX 59390393 59390432 -103209498 + L2 LINE L2 3204 3241 -31 225 289 53 26 chrX 59390819 59390895 -103209035 - MIR SINE MIR -90 118 41 427 211 67 0 chrX 59391420 59391510 -103208420 + Charlie4 DNA MER1_type 17 112 -1849 1810 255 120 37 chrX 59391558 59392201 -103207729 + L1M4 LINE L1 1 696 -5846 367 237 23 92 chrX 59392471 59392602 -103207328 - L2 LINE L2 -3 3310 3189 616 322 93 40 chrX 59392871 59393343 -103206587 - L2 LINE L2 -926 2388 1892 209 265 29 0 chrX 59393474 59393542 -103206388 + (TA)n Simple_repeat Simple_repeat 2 71 0 217 337 12 12 chrX 59394169 59394255 -103205675 + MIR SINE MIR 105 190 -72 424 280 42 37 chrX 59394673 59394862 -103205068 - MARNA DNA Mariner -395 191 2 196 118 20 20 chrX 59395011 59395062 -103204868 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 556 268 62 5 chrX 59395115 59395336 -103204594 + MIR SINE MIR 18 249 -13 275 348 13 51 chrX 59397144 59397302 -103202628 + MIR3 SINE MIR 54 205 -3 225 132 0 0 chrX 59397851 59397889 -103202041 + (TGGGGG)n Simple_repeat Simple_repeat 1 38 0 190 291 18 18 chrX 59398350 59398405 -103201525 + L3 LINE CR1 1309 1363 -214 212 268 0 18 chrX 59398483 59398539 -103201391 + L3 LINE CR1 1371 1425 -152 333 270 7 44 chrX 59399207 59399344 -103200586 + CT-rich Low_complexity Low_complexity 1 132 0 347 264 11 11 chrX 59399581 59399672 -103200258 + MIR SINE MIR 64 154 -108 219 75 19 38 chrX 59399681 59399734 -103200196 + (TATAA)n Simple_repeat Simple_repeat 2 53 0 779 83 13 63 chrX 59399738 59400056 -103199874 + (TTATA)n Simple_repeat Simple_repeat 1 302 0 782 39 33 66 chrX 59400060 59400241 -103199689 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 637 44 49 77 chrX 59400257 59400440 -103199490 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 563 71 33 60 chrX 59400456 59400639 -103199291 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 30 27 0 0 chrX 59400639 59400676 -103199254 + AT_rich Low_complexity Low_complexity 1 37 0 35 24 0 0 chrX 59400705 59400747 -103199183 + AT_rich Low_complexity Low_complexity 1 42 0 181 98 49 0 chrX 59400758 59400799 -103199131 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 241 202 20 81 chrX 59401333 59401432 -103198498 - MIR3 SINE MIR -12 196 104 351 121 0 0 chrX 59401573 59401631 -103198299 + (CA)n Simple_repeat Simple_repeat 1 58 0 1116 305 93 14 chrX 59402208 59402625 -103197305 + L3 LINE CR1 1113 1562 -15 438 53 0 0 chrX 59404551 59404608 -103195322 + (CA)n Simple_repeat Simple_repeat 1 57 0 363 331 39 8 chrX 59404808 59404935 -103194995 + MIR3 SINE MIR 14 144 -64 249 321 112 15 chrX 59405219 59405353 -103194577 - MIR SINE MIR -114 148 2 295 324 24 24 chrX 59405655 59405780 -103194150 - MIR SINE MIR -76 132 47 342 0 0 0 chrX 59406210 59406248 -103193682 + (CA)n Simple_repeat Simple_repeat 2 39 0 263 313 15 17 chrX 59406262 59406626 -103193304 + (CATATA)n Simple_repeat Simple_repeat 1 363 0 186 342 38 56 chrX 59406705 59406971 -103192959 - L2 LINE L2 -181 3091 2831 208 184 0 19 chrX 59407185 59407262 -103192668 + MIR SINE MIR 16 138 -70 362 273 0 0 chrX 59407421 59407498 -103192432 - MER63 DNA MER1_type -273 788 712 260 272 125 37 chrX 59407532 59407668 -103192262 - L2 LINE L2 -8 3305 3158 22 0 0 0 chrX 59407687 59407709 -103192221 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 59407771 59407798 -103192132 + AT_rich Low_complexity Low_complexity 1 27 0 399 171 0 133 chrX 59407898 59408003 -103191927 + HAL1 LINE L1 2310 2400 -107 1115 283 114 43 chrX 59408062 59408153 -103191777 - L2 LINE L2 -141 3172 3089 2216 208 11 57 chrX 59408153 59408682 -103191248 + MLT1D LTR MaLR 1 505 0 1115 283 114 43 chrX 59408682 59409566 -103190364 - L2 LINE L2 -224 3089 2128 420 292 6 64 chrX 59409619 59409790 -103190140 - MIR3 SINE MIR -6 202 42 444 305 111 35 chrX 59410361 59410587 -103189343 - MIR SINE MIR -18 244 2 809 181 31 0 chrX 59410820 59410980 -103188950 - FRAM SINE Alu -3 173 9 1116 182 0 80 chrX 59411331 59411595 -103188335 + L1MB8 LINE L1 5936 6178 0 43 71 0 0 chrX 59411751 59411836 -103188094 + AT_rich Low_complexity Low_complexity 1 85 0 307 175 113 62 chrX 59411867 59411964 -103187966 + L1ME4a LINE L1 6018 6119 -2 838 305 100 27 chrX 59412125 59412679 -103187251 + L1MC4a LINE L1 5448 6046 -75 198 296 168 24 chrX 59412750 59412875 -103187055 + MIR SINE MIR 117 259 -3 276 233 164 17 chrX 59413151 59413267 -103186663 - MIR SINE MIR -110 152 20 501 250 83 6 chrX 59414012 59414168 -103185762 + L2 LINE L2 3146 3313 0 195 329 12 24 chrX 59414262 59414344 -103185586 - L3b LINE CR1 -133 1450 1370 272 307 79 20 chrX 59414373 59414474 -103185456 - L2 LINE L2 -30 3242 3136 1769 116 65 55 chrX 59414592 59414885 -103185045 + AluSx SINE Alu 2 297 -15 189 273 30 30 chrX 59415013 59415079 -103184851 - L3b LINE CR1 -346 1237 1172 25 0 0 0 chrX 59415447 59415472 -103184458 + AT_rich Low_complexity Low_complexity 1 25 0 486 0 0 0 chrX 59416105 59416159 -103183771 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 207 293 0 0 chrX 59419720 59419778 -103180152 + G-rich Low_complexity Low_complexity 1 58 0 857 225 0 30 chrX 59419999 59420123 -103179807 + MER5B DNA MER1_type 13 132 -46 2332 97 73 6 chrX 59420123 59420464 -103179466 - THE1B LTR MaLR 0 364 1 857 225 0 30 chrX 59420464 59420508 -103179422 + MER5B DNA MER1_type 132 176 -2 21 0 0 0 chrX 59420928 59420949 -103178981 + AT_rich Low_complexity Low_complexity 1 21 0 2237 104 27 0 chrX 59421419 59421717 -103178213 + AluSx SINE Alu 1 306 -6 412 225 78 49 chrX 59421787 59421929 -103178001 - L2 LINE L2 0 3313 3168 245 200 20 0 chrX 59422156 59422206 -103177724 + L2 LINE L2 3262 3312 -1 22 0 0 0 chrX 59422561 59422583 -103177347 + AT_rich Low_complexity Low_complexity 1 22 0 755 99 0 0 chrX 59424133 59424244 -103175686 - L1PB1 LINE L1 -3 6148 6038 8309 188 53 9 chrX 59424244 59428406 -103171524 - L1PBa LINE L1 -2351 4511 6 515 200 0 0 chrX 59428477 59428567 -103171363 + Tigger3(Golem) DNA MER2_type 2938 3027 -2 589 237 0 7 chrX 59428579 59428787 -103171143 - FLAM_A SINE Alu 0 214 8 7990 10 0 0 chrX 59429371 59430927 -103169003 + L1PA2 LINE L1 4600 6155 0 1880 85 11 0 chrX 59431329 59431600 -103168330 - L1MA5A LINE L1 -12 6285 6012 372 369 11 32 chrX 59432011 59432198 -103167732 - MIR SINE MIR -45 217 35 228 213 21 0 chrX 59435105 59435152 -103164778 + L3 LINE CR1 1521 1568 -9 261 0 0 0 chrX 59435678 59435707 -103164223 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 204 125 0 0 chrX 59436401 59436433 -103163497 + (A)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chrX 59437140 59437169 -103162761 + (A)n Simple_repeat Simple_repeat 1 29 0 843 37 92 12 chrX 59440124 59440287 -103159643 + CT-rich Low_complexity Low_complexity 3 178 0 221 229 42 0 chrX 59440287 59440335 -103159595 + polypyrimidine Low_complexity Low_complexity 3 52 0 528 70 105 0 chrX 59440436 59440550 -103159380 + CT-rich Low_complexity Low_complexity 1 126 0 1784 163 11 4 chrX 59440551 59440828 -103159102 - AluJo SINE Alu -33 279 1 2002 192 38 36 chrX 59441778 59442304 -103157626 + L1MB8 LINE L1 5447 5973 -211 420 191 38 96 chrX 59442316 59442444 -103157486 + L1MB8 LINE L1 6027 6146 -38 2092 154 0 0 chrX 59442444 59442756 -103157174 - AluSx SINE Alu 0 312 1 420 191 38 96 chrX 59442756 59442784 -103157146 + L1MB8 LINE L1 6146 6174 -10 278 241 23 0 chrX 59442784 59442871 -103157059 + (TA)n Simple_repeat Simple_repeat 2 90 0 7352 9 2 6 chrX 59443235 59444099 -103155831 + L1PA2 LINE L1 5303 6163 0 1396 207 16 30 chrX 59444297 59444601 -103155329 - AluJb SINE Alu -12 300 1 1046 147 6 0 chrX 59444633 59444790 -103155140 + FRAM SINE Alu 5 162 -4 605 213 30 0 chrX 59444812 59444981 -103154949 + L1MA4 LINE L1 6126 6299 -1 21 36 0 0 chrX 59445896 59445924 -103154006 + AT_rich Low_complexity Low_complexity 1 28 0 3200 187 102 79 chrX 59447000 59448195 -103151735 + L1MC4 LINE L1 6820 8042 0 873 289 0 38 chrX 59448249 59448488 -103151442 + MIR SINE MIR 31 260 -2 1976 30 0 0 chrX 59448621 59448857 -103151073 + L1PA4 LINE L1 5917 6152 -3 636 139 0 0 chrX 59450906 59451007 -103148923 + L1P4 LINE L1 5502 5602 -564 2426 113 0 3 chrX 59451014 59451385 -103148545 - L1PB1 LINE L1 0 6867 6498 207 64 43 21 chrX 59451406 59451453 -103148477 + (TA)n Simple_repeat Simple_repeat 1 48 0 12923 200 31 8 chrX 59451498 59451531 -103148399 - L1PB1 LINE L1 -347 6520 6489 456 63 13 25 chrX 59451531 59451610 -103148320 + (TA)n Simple_repeat Simple_repeat 2 79 0 12923 200 31 8 chrX 59451610 59452869 -103147061 - L1PB1 LINE L1 -378 6489 5261 2301 118 0 3 chrX 59452869 59453183 -103146747 - AluSq SINE Alu 0 313 1 12923 200 31 8 chrX 59453183 59456903 -103143027 - L1PB1 LINE L1 -1606 5261 1392 607 283 5 0 chrX 59456900 59457091 -103142839 - L1PB1 LINE L1 -6666 197 6 * 2399 163 34 0 chrX 59457119 59457556 -103142374 + L1PA16 LINE L1 5589 6040 -126 10872 109 21 49 chrX 59457556 59460283 -103139647 + L1PA8A LINE L1 3469 6111 -20 232 242 61 0 chrX 59460276 59460375 -103139555 + L1MC4 LINE L1 6598 6702 -1340 * 384 294 0 0 chrX 59460384 59460520 -103139410 + (TA)n Simple_repeat Simple_repeat 2 137 0 258 270 0 0 chrX 59460523 59460612 -103139318 + L1MC4 LINE L1 6615 6703 -1339 657 253 0 0 chrX 59460625 59460803 -103139127 + (TA)n Simple_repeat Simple_repeat 1 178 0 256 269 0 0 chrX 59460808 59460860 -103139070 + (TATG)n Simple_repeat Simple_repeat 4 55 0 309 258 22 22 chrX 59460861 59460950 -103138980 + L1MC4 LINE L1 6615 6703 -1339 205 329 0 14 chrX 59460956 59461029 -103138901 + (CATA)n Simple_repeat Simple_repeat 4 75 0 301 333 0 0 chrX 59461183 59461273 -103138657 - L1MC4 LINE L1 -1339 6703 6614 * 320 283 0 22 chrX 59461235 59461327 -103138603 + L1MC4 LINE L1 6614 6703 -1339 315 326 0 0 chrX 59461299 59461388 -103138542 - L1MC4 LINE L1 -1339 6703 6615 * 438 226 0 0 chrX 59461306 59461412 -103138518 + (TA)n Simple_repeat Simple_repeat 1 106 0 280 227 0 0 chrX 59461415 59461481 -103138449 + L1 LINE L1 4477 4542 -1604 * 304 274 44 0 chrX 59461476 59461589 -103138341 + L1MA9 LINE L1 6193 6310 -2 845 129 0 7 chrX 59461605 59461745 -103138185 + L1PA16 LINE L1 6027 6165 -1 211 306 0 0 chrX 59462674 59462736 -103137194 + L2 LINE L2 3247 3308 -5 666 194 43 21 chrX 59464312 59464498 -103135432 - Charlie1 DNA MER1_type 0 2761 2572 * 792 226 38 11 chrX 59464495 59464681 -103135249 - Charlie1 DNA MER1_type -2570 191 1 2150 144 0 0 chrX 59464943 59465255 -103134675 - AluSx SINE Alu 0 312 1 193 98 49 0 chrX 59465648 59465689 -103134241 + A-rich Low_complexity Low_complexity 3 45 0 38621 77 9 9 chrX 59465985 59472131 -103127799 - L1PA6 LINE L1 -1 6153 11 410 313 45 30 chrX 59474285 59474419 -103125511 - L2 LINE L2 0 3272 3137 801 179 17 11 chrX 59475124 59475303 -103124627 + L1MB8 LINE L1 5987 6166 -12 232 270 40 81 chrX 59475373 59475540 -103124390 - L2 LINE L2 -202 3070 2911 556 258 0 0 chrX 59475540 59475664 -103124266 + MER5C DNA MER1_type 1 124 -200 447 168 129 0 chrX 59475690 59475791 -103124139 + MER5C DNA MER1_type 211 324 0 276 30 0 0 chrX 59475852 59475885 -103124045 + (CA)n Simple_repeat Simple_repeat 2 34 0 1599 182 44 3 chrX 59476040 59476337 -103123593 + AluJo SINE Alu 1 309 -3 294 29 0 0 chrX 59476648 59476683 -103123247 + (CA)n Simple_repeat Simple_repeat 2 36 0 353 279 53 18 chrX 59477134 59477272 -103122658 + MIR3 SINE MIR 56 200 -8 1632 97 30 41 chrX 59477306 59477574 -103122356 - L1PA8A LINE L1 0 6131 5867 391 255 72 39 chrX 59478124 59478293 -103121637 + L1ME4a LINE L1 5175 5349 -797 417 283 122 51 chrX 59478331 59478642 -103121288 + L1ME4a LINE L1 5414 5746 -375 36 0 0 0 chrX 59478769 59478805 -103121125 + AT_rich Low_complexity Low_complexity 1 36 0 294 245 132 0 chrX 59478830 59478936 -103120994 + L1ME4a LINE L1 5990 6109 -12 31 44 0 0 chrX 59479000 59479045 -103120885 + AT_rich Low_complexity Low_complexity 1 45 0 5795 145 2 32 chrX 59479210 59480505 -103119425 - L1PB2 LINE L1 -1 6866 5620 198 327 0 0 chrX 59480934 59480986 -103118944 + L2 LINE L2 3214 3265 -7 1453 233 90 23 chrX 59481786 59482219 -103117711 - MLT1C LTR MaLR 0 467 6 2131 129 0 0 chrX 59482590 59482885 -103117045 + AluSx SINE Alu 1 295 -17 379 276 41 16 chrX 59483155 59483278 -103116652 - MIR SINE MIR 0 262 137 359 309 12 6 chrX 59483527 59483689 -103116241 + L2 LINE L2 918 1080 -2234 299 25 25 0 chrX 59483689 59483729 -103116201 + (TTG)n Simple_repeat Simple_repeat 2 42 0 23737 144 16 128 chrX 59483832 59484933 -103114997 - L1P5 LINE L1 -721 5430 4207 3646 49 0 0 chrX 59484933 59485383 -103114547 - L1PA5 LINE L1 0 6154 5705 3501 76 0 14 chrX 59485388 59485873 -103114057 - L1PA8 LINE L1 -4 6168 5691 1893 155 153 58 chrX 59485874 59486339 -103113591 + LTR22 LTR ERVK 1 509 0 23737 144 16 128 chrX 59486339 59491368 -103108562 - L1P5 LINE L1 -1947 4204 5 7850 208 42 85 chrX 59491368 59493513 -103106417 - L1PB2 LINE L1 -1763 5099 3093 1999 121 0 41 chrX 59493513 59493828 -103106102 + AluSg SINE Alu 3 304 -6 7850 208 42 85 chrX 59493828 59494703 -103105227 - L1PB2 LINE L1 -3769 3093 2182 1218 146 14 32 chrX 59494700 59494919 -103105011 - L1PB2 LINE L1 -6013 850 636 * 1103 157 5 5 chrX 59494921 59495119 -103104811 - L1PB2 LINE L1 -6663 200 3 35 0 0 0 chrX 59495156 59495191 -103104739 + AT_rich Low_complexity Low_complexity 1 35 0 2566 174 39 18 chrX 59495200 59495994 -103103936 - L1M2 LINE L1 -519 5793 4978 23 0 0 0 chrX 59495994 59496017 -103103913 + AT_rich Low_complexity Low_complexity 1 23 0 2089 121 7 0 chrX 59496017 59496306 -103103624 + AluSp SINE Alu 1 291 -22 10685 162 14 17 chrX 59496306 59498850 -103101080 - L1MA1 LINE L1 -2 7719 5185 6618 75 19 0 chrX 59498850 59499859 -103100071 - L1PA7 LINE L1 -1 6153 5138 10685 162 14 17 chrX 59499859 59500504 -103099426 - L1MA1 LINE L1 -2536 5185 4540 24 53 0 0 chrX 59500523 59500561 -103099369 + AT_rich Low_complexity Low_complexity 1 38 0 7495 8 0 0 chrX 59500672 59501515 -103098415 - L1HS LINE L1 0 6155 5313 3631 21 0 0 chrX 59501514 59501942 -103097988 + L1HS LINE L1 4854 5281 -865 * 8243 209 37 71 chrX 59501939 59504133 -103095797 - L1MA1 LINE L1 -2955 4610 2342 2026 69 0 0 chrX 59504133 59504378 -103095552 - AluSc SINE Alu 0 309 65 8243 209 37 71 chrX 59504378 59504391 -103095539 - L1MA1 LINE L1 -5223 2342 2330 1859 166 0 0 chrX 59504391 59504674 -103095256 - AluJb SINE Alu -23 289 7 8243 209 37 71 chrX 59504674 59504686 -103095244 - L1MA1 LINE L1 -5235 2330 2319 6070 98 21 0 chrX 59504686 59505695 -103094235 - L1PA14 LINE L1 -9 6152 5148 8243 209 37 71 chrX 59505695 59507155 -103092775 - L1MA1 LINE L1 -5246 2319 1049 1307 287 61 46 chrX 59507227 59507970 -103091960 - L1M3e LINE L1 -5105 1925 70 1316 167 9 5 chrX 59507971 59508187 -103091743 + MER61A LTR ERV1 1 217 -126 700 178 0 47 chrX 59508188 59508260 -103091670 - L1M3e LINE L1 -6066 971 897 1991 156 14 23 chrX 59508260 59508606 -103091324 + MER61A LTR ERV1 1 343 0 700 178 0 47 chrX 59508606 59508684 -103091246 - L1M3e LINE L1 -6140 897 5 550 190 6 121 chrX 59509183 59509357 -103090573 - L1ME3A LINE L1 -24 6146 5993 1684 215 21 31 chrX 59509363 59509842 -103090088 - L1ME3A LINE L1 -824 5322 4849 798 167 13 123 chrX 59509894 59510121 -103089809 + MLT1A1 LTR MaLR 164 365 0 472 206 124 9 chrX 59510121 59510339 -103089591 - L1ME3A LINE L1 -1563 4583 4341 989 309 31 13 chrX 59510639 59511028 -103088902 - L1MDa LINE L1 -6126 414 19 507 357 46 10 chrX 59511138 59511334 -103088596 - MIR3 SINE MIR -3 205 3 2261 99 0 0 chrX 59512271 59512563 -103087367 + AluY SINE Alu 1 292 -19 307 317 12 18 chrX 59512861 59513028 -103086902 + GA-rich Low_complexity Low_complexity 2 167 0 248 416 0 0 chrX 59514272 59514373 -103085557 - L2 LINE L2 -219 3053 2953 4676 168 17 43 chrX 59514667 59515203 -103084727 - L1MA7 LINE L1 -3 6288 5740 2083 123 3 22 chrX 59515203 59515519 -103084411 - AluSg SINE Alu 0 310 1 4676 168 17 43 chrX 59515519 59516649 -103083281 - L1MA7 LINE L1 -551 5740 4670 2003 98 0 0 chrX 59516649 59516914 -103083016 + AluY SINE Alu 35 299 -12 4676 168 17 43 chrX 59516914 59517044 -103082886 - L1MA7 LINE L1 -1621 4670 4538 4742 184 52 19 chrX 59517050 59518177 -103081753 + L1MA7 LINE L1 3382 4545 -1601 262 257 53 9 chrX 59518635 59518748 -103081182 - L1MC4 LINE L1 -1 8041 7924 310 286 88 55 chrX 59518850 59519213 -103080717 - L1ME LINE L1 -419 5743 5369 273 293 67 86 chrX 59519347 59519565 -103080365 - MIR SINE MIR -14 248 36 1253 229 97 73 chrX 59519565 59519644 -103080286 - MLT1D LTR MaLR 0 505 429 1443 78 46 27 chrX 59519644 59519863 -103080067 - L1PA11 LINE L1 -3 6171 5949 1253 229 97 73 chrX 59519863 59520276 -103079654 - MLT1D LTR MaLR -76 429 1 557 303 36 0 chrX 59520621 59520786 -103079144 - MIR3 SINE MIR 0 208 38 269 297 0 66 chrX 59521187 59521278 -103078652 + L3 LINE CR1 1413 1497 -80 870 331 41 61 chrX 59521782 59522313 -103077617 - L2 LINE L2 0 3272 2751 249 108 0 0 chrX 59522581 59522618 -103077312 + (TG)n Simple_repeat Simple_repeat 1 37 0 219 69 0 0 chrX 59522722 59522751 -103077179 + (CA)n Simple_repeat Simple_repeat 1 29 0 774 319 16 31 chrX 59522830 59523153 -103076777 - L2 LINE L2 -558 2756 2439 458 288 177 25 chrX 59523420 59523618 -103076312 - MIR SINE MIR -7 255 28 748 200 123 24 chrX 59523994 59524164 -103075766 + MER5A DNA MER1_type 1 187 -2 746 311 28 12 chrX 59524551 59524802 -103075128 - MIR SINE MIR -6 256 2 416 317 0 16 chrX 59525223 59525346 -103074584 - MIR3 SINE MIR -48 160 40 744 310 62 4 chrX 59525462 59525688 -103074242 - MIR SINE MIR -22 240 2 394 238 195 24 chrX 59525715 59525879 -103074051 + MER58A DNA MER1_type 33 224 0 413 228 60 107 chrX 59526760 59526975 -103072955 - MIR3 SINE MIR -3 205 1 680 298 0 0 chrX 59527382 59527560 -103072370 + MIR SINE MIR 59 236 -26 431 303 15 15 chrX 59528633 59528765 -103071165 + MIR3 SINE MIR 40 171 -37 361 337 88 33 chrX 59528806 59529025 -103070905 - MIR SINE MIR -15 247 19 285 243 0 66 chrX 59529435 59529571 -103070359 + CT-rich Low_complexity Low_complexity 4 130 0 404 315 24 36 chrX 59529645 59529810 -103070120 - MIR SINE MIR -51 211 49 2371 91 0 7 chrX 59529867 59530176 -103069754 - AluSp SINE Alu -6 307 1 680 284 76 0 chrX 59530648 59530873 -103069057 - MIR SINE MIR 0 262 21 258 268 158 0 chrX 59531509 59531591 -103068339 - MIR SINE MIR -64 144 50 533 228 106 26 chrX 59532002 59532191 -103067739 - MIR SINE MIR -6 256 53 240 386 9 0 chrX 59532403 59532517 -103067413 + MIR SINE MIR 147 261 -1 874 235 65 12 chrX 59532718 59532965 -103066965 + MIR SINE MIR 3 262 0 1523 223 63 5 chrX 59533334 59533761 -103066169 - L1ME3A LINE L1 0 6170 5719 619 290 53 5 chrX 59534882 59535102 -103064828 - MIR SINE MIR -27 235 3 191 220 0 60 chrX 59535136 59535186 -103064744 + L2 LINE L2 3267 3313 0 820 239 31 54 chrX 59535415 59535675 -103064255 - MIR SINE MIR 0 262 9 310 200 0 0 chrX 59535788 59535853 -103064077 - MER116 DNA Mariner -4 76 12 287 294 29 44 chrX 59535862 59535998 -103063932 - L3b LINE CR1 -201 1382 1249 355 293 19 0 chrX 59536429 59536542 -103063388 + MIR SINE MIR 50 168 -62 389 294 169 6 chrX 59536747 59536907 -103063023 + MIR3 SINE MIR 14 199 -9 9209 190 74 101 chrX 59537698 59540182 -103059748 - L1PB1 LINE L1 -2 6865 4317 3053 40 0 3 chrX 59540182 59540555 -103059375 - L1PA4 LINE L1 -2 6153 5782 9209 190 74 101 chrX 59540555 59541629 -103058301 - L1PB1 LINE L1 -2550 4317 3377 7549 37 0 0 chrX 59541629 59543223 -103056707 - L1PA5 LINE L1 -3 6151 4558 9209 190 74 101 chrX 59543223 59544311 -103055619 - L1PB1 LINE L1 -3490 3377 2262 41025 32 21 1 chrX 59544378 59550410 -103049520 - L1HS LINE L1 0 6155 1 4352 150 23 26 chrX 59550410 59551315 -103048615 - L1PB1 LINE L1 -4570 2293 1392 728 217 16 0 chrX 59551312 59551501 -103048429 - L1PB1 LINE L1 -6666 197 6 * 368 280 168 8 chrX 59552360 59552485 -103047445 - MIR SINE MIR -116 146 2 377 279 55 73 chrX 59553072 59553291 -103046639 + MIR SINE MIR 48 262 0 338 287 60 73 chrX 59553742 59553892 -103046038 + MIR3 SINE MIR 22 169 -39 462 351 24 24 chrX 59554151 59554356 -103045574 + MIR3 SINE MIR 3 207 -1 438 268 161 18 chrX 59554576 59554744 -103045186 + MIR SINE MIR 11 202 -60 657 251 20 7 chrX 59554824 59554990 -103044940 + MIR SINE MIR 38 204 -58 376 300 82 24 chrX 59555377 59555547 -103044383 - MIR SINE MIR -73 189 10 643 325 34 23 chrX 59556835 59557100 -103042830 + L3 LINE CR1 1298 1565 -12 291 304 30 65 chrX 59558418 59558586 -103041344 + MIR SINE MIR 36 197 -65 188 159 0 23 chrX 59558681 59558725 -103041205 + CT-rich Low_complexity Low_complexity 4 46 0 29 70 0 0 chrX 59559087 59559144 -103040786 + AT_rich Low_complexity Low_complexity 1 57 0 546 299 45 17 chrX 59559261 59559552 -103040378 - L1ME4a LINE L1 -202 5919 5621 304 286 257 20 chrX 59559643 59559888 -103040042 + L1MC4 LINE L1 7507 7809 -233 283 206 111 8 chrX 59559975 59560101 -103039829 + L1MC4 LINE L1 7904 8042 0 583 250 36 83 chrX 59560156 59560500 -103039430 - L1ME4a LINE L1 -462 5659 5387 224 122 24 0 chrX 59560862 59560903 -103039027 + (TA)n Simple_repeat Simple_repeat 1 42 0 444 321 109 31 chrX 59560929 59561122 -103038808 + L3 LINE CR1 1367 1574 -3 199 323 55 55 chrX 59561123 59561250 -103038680 - MIR SINE MIR -134 128 2 313 92 0 62 chrX 59561825 59561890 -103038040 + (TCTCCC)n Simple_repeat Simple_repeat 5 65 0 860 216 16 16 chrX 59561969 59562154 -103037776 + MIR SINE MIR 71 255 -7 290 333 64 50 chrX 59563207 59563348 -103036582 - L2 LINE L2 -5 3267 3125 272 293 49 0 chrX 59563625 59563748 -103036182 - L2 LINE L2 -633 2681 2553 234 296 34 0 chrX 59563824 59563912 -103036018 - L2 LINE L2 -1240 2074 1984 288 0 0 0 chrX 59563923 59563955 -103035975 + (TG)n Simple_repeat Simple_repeat 2 33 0 192 40 0 0 chrX 59564916 59564941 -103034989 + (TG)n Simple_repeat Simple_repeat 1 25 0 206 216 14 0 chrX 59565053 59565127 -103034803 + CT-rich Low_complexity Low_complexity 2 76 0 413 304 112 0 chrX 59565449 59565610 -103034320 - L2 LINE L2 -667 2647 2469 267 369 26 41 chrX 59565763 59566031 -103033899 - L2 LINE L2 -201 3071 2808 375 258 73 8 chrX 59566459 59566583 -103033347 - MIR SINE MIR -43 219 88 365 250 11 11 chrX 59566594 59566686 -103033244 - L1MC4 LINE L1 -1341 6701 6610 436 248 86 0 chrX 59566693 59566798 -103033132 + MER81 DNA DNA 1 114 0 254 323 16 79 chrX 59567299 59567426 -103032504 - MIR SINE MIR -65 143 25 974 288 31 20 chrX 59567627 59568059 -103031871 - MLT1J LTR MaLR -30 481 2 21 0 0 0 chrX 59568534 59568555 -103031375 + AT_rich Low_complexity Low_complexity 1 21 0 1066 160 10 25 chrX 59568591 59568791 -103031139 - L1PA16 LINE L1 -2 6164 5968 2942 103 79 4 chrX 59568810 59569278 -103030652 - L1PA16 LINE L1 -9 6157 5655 1175 122 0 0 chrX 59569282 59569438 -103030492 - AluSg/x SINE Alu -17 293 138 265 94 19 0 chrX 59569443 59569496 -103030434 - L1PA16 LINE L1 -837 5329 5276 213 258 48 0 chrX 59569511 59569573 -103030357 + MIR3 SINE MIR 98 162 -46 2012 162 0 13 chrX 59570032 59570347 -103029583 - AluSx SINE Alu 0 312 2 2357 83 0 43 chrX 59570415 59570742 -103029188 + AluSp SINE Alu 1 313 0 21 0 0 0 chrX 59571764 59571785 -103028145 + AT_rich Low_complexity Low_complexity 1 21 0 1951 148 4 0 chrX 59572023 59572301 -103027629 + AluSx SINE Alu 6 284 -28 480 35 0 0 chrX 59572301 59572359 -103027571 + (TA)n Simple_repeat Simple_repeat 2 59 0 473 361 114 7 chrX 59572697 59572974 -103026956 - L2 LINE L2 0 3313 3007 847 237 69 6 chrX 59572974 59573147 -103026783 - MER5A DNA MER1_type 0 189 6 922 338 84 41 chrX 59573344 59574055 -103025875 - L2 LINE L2 -780 2534 1793 550 325 43 0 chrX 59574079 59574288 -103025642 - L2 LINE L2 -2485 829 612 752 279 37 101 chrX 59574311 59574827 -103025103 - L2 LINE L2 -665 2649 2167 4584 168 41 9 chrX 59574958 59576442 -103023488 - L1MA4A LINE L1 -23 6280 4670 204 40 0 0 chrX 59576442 59576467 -103023463 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 4584 168 41 9 chrX 59576467 59576688 -103023242 - L1MA4A LINE L1 -1633 4670 4457 24 0 0 0 chrX 59576688 59576712 -103023218 + AT_rich Low_complexity Low_complexity 1 24 0 2744 30 0 9 chrX 59576712 59577042 -103022888 - L1PA3 LINE L1 0 6155 5829 1100 8 0 0 chrX 59577042 59577172 -103022758 + L1HS LINE L1 5698 5827 -328 335 222 12 0 chrX 59577173 59577254 -103022676 - L1MA4A LINE L1 -1679 4467 4386 417 174 23 0 chrX 59577810 59577896 -103022034 - L2 LINE L2 -1073 2241 2154 471 229 92 0 chrX 59577897 59578028 -103021902 - L2 LINE L2 -677 2637 2495 380 330 99 19 chrX 59578103 59579016 -103020914 - L1M4 LINE L1 -915 5231 4246 1014 148 53 0 chrX 59579295 59579484 -103020446 + L1PB1 LINE L1 2 200 -6663 10706 137 127 7 chrX 59579487 59582219 -103017711 + L1PB1 LINE L1 637 3695 -3167 1838 192 61 27 chrX 59582232 59582674 -103017256 - LTR2B LTR ERV1 0 490 34 42042 68 14 17 chrX 59582695 59589521 -103010409 - Harlequin LTR ERV1 0 6896 1 1609 197 70 34 chrX 59589521 59589962 -103009968 - LTR2B LTR ERV1 0 490 34 4848 206 67 15 chrX 59589981 59591682 -103008248 + L1PB1 LINE L1 3706 5733 -1134 1720 163 59 42 chrX 59591682 59592039 -103007891 - THE1B LTR MaLR 0 364 2 4848 206 67 15 chrX 59592039 59592858 -103007072 + L1PB1 LINE L1 5733 6507 -360 231 218 0 0 chrX 59592859 59592914 -103007016 + (TA)n Simple_repeat Simple_repeat 2 56 0 2816 80 0 3 chrX 59592915 59593290 -103006640 + L1PB1 LINE L1 6492 6865 -2 15070 29 0 0 chrX 59593456 59596020 -103003910 - L1PA2 LINE L1 0 6155 3592 31 26 0 0 chrX 59596395 59596433 -103003497 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chrX 59597402 59597430 -103002500 + AT_rich Low_complexity Low_complexity 1 28 0 201 29 57 29 chrX 59597553 59597588 -103002342 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 5084 118 28 19 chrX 59597589 59598325 -103001605 - L1PA13 LINE L1 -6 6860 6132 1956 134 0 39 chrX 59598325 59598630 -103001300 - AluSx SINE Alu -19 293 1 5084 118 28 19 chrX 59598630 59599557 -103000373 - L1PA13 LINE L1 -734 6132 5168 225 0 0 0 chrX 59599558 59599583 -103000347 + (GAATG)n Simple_repeat Simple_repeat 2 26 0 11047 187 25 20 chrX 59599585 59602115 -102997815 - L1PA13 LINE L1 -1771 5078 2535 668 156 9 9 chrX 59602115 59602224 -102997706 + FRAM SINE Alu 36 144 -32 207 0 0 0 chrX 59602225 59602248 -102997682 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 676 169 10 1 chrX 59602248 59602395 -102997535 - L1PA13 LINE L1 -4305 2544 2385 3239 78 7 5 chrX 59602395 59602842 -102997088 - MER9 LTR ERVK -63 448 1 1499 233 26 0 chrX 59602842 59603147 -102996783 - L1PA13 LINE L1 -6473 366 54 22 0 0 0 chrX 59603405 59603427 -102996503 + AT_rich Low_complexity Low_complexity 1 22 0 506 232 72 42 chrX 59603428 59603665 -102996265 - L1ME1 LINE L1 -20 6146 5903 * 1371 275 48 11 chrX 59603648 59604527 -102995403 + L1MCc LINE L1 1344 2455 -4667 246 238 0 0 chrX 59604523 59604586 -102995344 + L1PA15 LINE L1 2357 2419 -4430 * 842 165 0 0 chrX 59604593 59604720 -102995210 + AluSq/x SINE Alu 3 129 -183 2461 248 7 7 chrX 59604731 59605421 -102994509 + L1PA15 LINE L1 2631 3320 -3529 4001 180 39 19 chrX 59605433 59607058 -102992872 + L1PA15 LINE L1 5079 6734 -134 3843 241 28 24 chrX 59607056 59608528 -102991402 - L1PA15-16 LINE L1 -3706 3878 2403 * 6379 37 0 0 chrX 59608712 59609540 -102990390 + L1P LINE L1 2039 2866 -3280 364 309 54 60 chrX 59610220 59610589 -102989341 - L1PA15-16 LINE L1 -7214 367 1 2559 210 47 25 chrX 59610591 59611310 -102988620 - L1M4c LINE L1 -4729 1655 921 331 347 64 12 chrX 59611319 59611492 -102988438 - L2 LINE L2 -1438 1876 1695 542 194 225 0 chrX 59611510 59611639 -102988291 - MER3 DNA MER1_type -5 204 47 204 325 16 78 chrX 59611653 59611844 -102988086 + L2 LINE L2 1477 1655 -1659 3755 191 40 0 chrX 59611859 59612562 -102987368 + MER44D DNA MER2_type 3 605 0 427 335 19 15 chrX 59612593 59612799 -102987131 - L2 LINE L2 -1872 1442 1236 406 287 92 37 chrX 59612877 59613041 -102986889 + MIR SINE MIR 5 177 -85 305 375 90 20 chrX 59613061 59613363 -102986567 - L2 LINE L2 -1876 1438 1108 662 242 16 26 chrX 59613363 59613553 -102986377 - MER5A DNA MER1_type -1 188 1 305 375 90 20 chrX 59613553 59613594 -102986336 - L2 LINE L2 -2206 1108 1071 352 269 109 29 chrX 59613770 59613945 -102985985 + L2 LINE L2 3125 3313 0 377 240 21 0 chrX 59614083 59614179 -102985751 - L1ME1 LINE L1 -26 6140 6043 3054 190 17 38 chrX 59614328 59614581 -102985349 - L1MD2 LINE L1 -432 5927 5670 1728 167 4 0 chrX 59614581 59614845 -102985085 - AluSx SINE Alu -28 284 20 3054 190 17 38 chrX 59614845 59615279 -102984651 - L1MD2 LINE L1 -689 5670 5254 1685 299 99 24 chrX 59615298 59616124 -102983806 - L2 LINE L2 -256 3057 2161 3524 190 36 35 chrX 59616321 59617803 -102982127 + L1MB8 LINE L1 4675 6178 0 557 356 63 43 chrX 59617803 59618359 -102981571 - L2 LINE L2 -618 2696 2130 182 62 31 0 chrX 59619075 59619107 -102980823 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 321 303 84 34 chrX 59619109 59619228 -102980702 + MIR SINE MIR 19 143 -65 262 358 45 41 chrX 59619262 59619580 -102980350 - L2 LINE L2 -7 3265 2866 239 235 174 61 chrX 59620525 59620623 -102979307 + L3b LINE CR1 1345 1453 -130 373 381 66 34 chrX 59622103 59622452 -102977478 - L2 LINE L2 -389 2925 2566 285 29 0 0 chrX 59622480 59622514 -102977416 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1529 93 4 80 chrX 59623391 59623628 -102976302 - AluY SINE Alu -15 296 78 1668 189 0 31 chrX 59624434 59624756 -102975174 - AluJo SINE Alu 0 312 1 583 212 85 0 chrX 59624759 59624877 -102975053 - AluJo/FLAM SINE Alu -173 129 2 22 0 0 0 chrX 59625436 59625458 -102974472 + AT_rich Low_complexity Low_complexity 1 22 0 836 354 143 22 chrX 59625830 59627053 -102972877 - L2 LINE L2 -1643 1671 223 1855 114 0 0 chrX 59627679 59627933 -102971997 + L1PB3 LINE L1 5895 6148 -6 206 182 23 0 chrX 59627933 59627977 -102971953 + (TA)n Simple_repeat Simple_repeat 2 46 0 284 193 40 7 chrX 59628474 59628624 -102971306 + (TA)n Simple_repeat Simple_repeat 2 156 0 214 318 77 20 chrX 59628689 59628808 -102971122 - MIR SINE MIR -49 159 35 633 259 0 70 chrX 59629036 59629237 -102970693 - MIR SINE MIR 0 262 76 448 232 30 85 chrX 59629724 59629888 -102970042 - L3 LINE CR1 -210 1367 1213 284 258 58 33 chrX 59631726 59631846 -102968084 - MIR SINE MIR -108 154 32 195 311 81 14 chrX 59632537 59632611 -102967319 + L2 LINE L2 2496 2574 -740 3992 146 29 1 chrX 59632654 59633673 -102966257 + L1MA2 LINE L1 4556 5606 -696 7023 189 19 5 chrX 59633675 59635344 -102964586 + L1PA14 LINE L1 1 1979 -5602 * 15857 189 45 20 chrX 59635338 59639928 -102960002 + L1PA14 LINE L1 2904 7599 0 3940 138 30 4 chrX 59639928 59640616 -102959314 + L1MA2 LINE L1 5593 6304 0 206 395 59 0 chrX 59640627 59640746 -102959184 + L2 LINE L2 2590 2715 -599 1258 269 207 16 chrX 59640799 59641587 -102958343 + L1MDb LINE L1 77 1127 -5282 1902 166 38 32 chrX 59641587 59641669 -102958261 - THE1C LTR MaLR 0 375 295 1952 147 16 45 chrX 59641669 59642044 -102957886 - THE1B LTR MaLR 0 364 1 1902 166 38 32 chrX 59642044 59642334 -102957596 - THE1C LTR MaLR -80 295 1 8406 154 77 18 chrX 59642334 59643822 -102956108 - THE1B-int LTR MaLR 0 1580 5 1635 176 45 48 chrX 59643826 59644200 -102955730 - THE1C LTR MaLR 0 375 3 2218 228 57 39 chrX 59644206 59644777 -102955153 + L1MDb LINE L1 1126 1718 -4688 2094 138 6 3 chrX 59644777 59645088 -102954842 - AluSx SINE Alu 0 312 1 2218 228 57 39 chrX 59645088 59645338 -102954592 + L1MDb LINE L1 1718 1962 -4444 1518 246 18 5 chrX 59645331 59645770 -102954160 + L1MDb LINE L1 2849 3293 -3113 * 6109 246 47 7 chrX 59646062 59647906 -102952024 + L1MDb LINE L1 3230 5146 -1260 269 247 0 13 chrX 59649344 59649421 -102950509 + L1MDb LINE L1 5453 5528 -878 605 171 8 17 chrX 59649430 59649547 -102950383 + FLAM_C SINE Alu 1 116 -27 204 40 0 0 chrX 59649552 59649577 -102950353 + (TG)n Simple_repeat Simple_repeat 2 26 0 237 289 0 0 chrX 59649591 59649681 -102950249 + L1MC4 LINE L1 6614 6703 -1339 258 176 0 0 chrX 59649681 59649732 -102950198 + (TATG)n Simple_repeat Simple_repeat 3 53 0 236 188 21 83 chrX 59649737 59649833 -102950097 + L1MC4 LINE L1 6614 6703 -1339 311 296 23 0 chrX 59649865 59649953 -102949977 + L1MC4 LINE L1 6614 6703 -1339 445 214 0 30 chrX 59649954 59650085 -102949845 + (TATATG)n Simple_repeat Simple_repeat 2 128 0 330 286 0 11 chrX 59650085 59650176 -102949754 + L1MC4 LINE L1 6614 6703 -1339 217 68 45 0 chrX 59650177 59650221 -102949709 + (TA)n Simple_repeat Simple_repeat 1 46 0 975 200 0 0 chrX 59650223 59650383 -102949547 + FRAM SINE Alu 1 156 -20 284 100 43 14 chrX 59650459 59650529 -102949401 + L1MA1 LINE L1 5267 5338 -1006 2338 89 6 19 chrX 59650863 59651176 -102948754 - AluSg SINE Alu -1 309 1 782 131 0 0 chrX 59651734 59651856 -102948074 + L1MA1 LINE L1 5877 5998 -304 269 210 81 73 chrX 59652171 59652295 -102947635 - MLT1L LTR MaLR -8 607 483 11969 186 34 15 chrX 59652452 59654939 -102944991 - L1MA1 LINE L1 -6 7715 5122 7342 32 0 0 chrX 59654939 59656044 -102943886 - L1PA3 LINE L1 0 6155 5033 11969 186 34 15 chrX 59656044 59657378 -102942552 - L1MA1 LINE L1 -2599 5122 3815 * 13737 185 180 7 chrX 59657362 59660399 -102939531 - L1MA1 LINE L1 -3990 3575 12 261 0 0 0 chrX 59660826 59660855 -102939075 + (T)n Simple_repeat Simple_repeat 1 29 0 1657 62 111 0 chrX 59660856 59661081 -102938849 - LTR17 LTR ERV1 -530 250 1 2254 87 0 0 chrX 59661084 59661372 -102938558 - HERV17 LTR ERV1 -4 8622 8335 290 77 0 0 chrX 59661362 59661401 -102938529 - HERV17 LTR ERV1 -1078 7548 7510 * 14147 52 0 6 chrX 59661395 59663122 -102936808 - HERV17 LTR ERV1 -2608 6018 4302 1410 208 68 0 chrX 59663349 59663655 -102936275 - AluJb SINE Alu 0 324 1 889 294 193 29 chrX 59663750 59664442 -102935488 + L2 LINE L2 2260 3064 -249 859 264 37 76 chrX 59664442 59664848 -102935082 - MLT1B LTR MaLR 0 390 1 711 211 16 89 chrX 59664869 59665115 -102934815 + L2 LINE L2 3086 3313 0 202 341 44 55 chrX 59665516 59665698 -102934232 - L2 LINE L2 -173 3099 2920 913 253 80 47 chrX 59666435 59666855 -102933075 - MER66A LTR ERV1 -47 498 59 231 246 42 114 chrX 59666874 59667041 -102932889 - L1MC4a LINE L1 -1849 5959 5805 1664 273 86 99 chrX 59667598 59668896 -102931034 - L3 LINE CR1 -7 1570 291 585 200 30 145 chrX 59668899 59669134 -102930796 + MER2 DNA MER2_type 4 211 -134 221 0 35 0 chrX 59669175 59669204 -102930726 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 16225 115 11 9 chrX 59669204 59670894 -102929036 - L1PA7 LINE L1 -13 6141 4442 2385 54 0 14 chrX 59670894 59671190 -102928740 - AluY SINE Alu -19 292 1 16225 115 11 9 chrX 59671190 59672812 -102927118 - L1PA7 LINE L1 -1712 4442 2825 8119 113 68 2 chrX 59672812 59674092 -102925838 + L1PA7 LINE L1 1454 2817 -3329 1770 193 0 0 chrX 59674098 59674403 -102925527 - AluSx SINE Alu -7 305 1 207 0 0 0 chrX 59674408 59674431 -102925499 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 282 286 0 0 chrX 59674437 59674500 -102925430 + MER2 DNA MER2_type 282 344 -1 203 365 95 29 chrX 59674500 59674637 -102925293 - L3 LINE CR1 -1285 292 147 558 275 29 0 chrX 59674696 59674834 -102925096 - MIR3 SINE MIR -3 205 64 470 273 15 23 chrX 59675041 59675173 -102924757 + MIR3 SINE MIR 5 135 -73 322 196 0 0 chrX 59675203 59675259 -102924671 - L2 LINE L2 -3 3310 3255 208 369 0 0 chrX 59675578 59675643 -102924287 + polypyrimidine Low_complexity Low_complexity 1 65 0 278 274 75 38 chrX 59676201 59676320 -102923610 - MIR SINE MIR -75 133 3 885 205 25 90 chrX 59676380 59676624 -102923306 + MIR SINE MIR 11 238 -24 201 369 60 27 chrX 59676732 59676881 -102923049 + MIR SINE MIR 1 154 -108 8491 139 16 3 chrX 59676919 59678060 -102921870 - Tigger1 DNA MER2_type -60 2358 1194 7220 44 0 0 chrX 59678060 59679145 -102920785 - L1PA4 LINE L1 0 6155 5069 8491 139 16 3 chrX 59679145 59679385 -102920545 - Tigger1 DNA MER2_type -1224 1194 959 709 148 26 0 chrX 59679385 59679500 -102920430 + L1PA15 LINE L1 5942 6059 -106 2288 168 0 0 chrX 59679500 59679858 -102920072 + THE1B LTR MaLR 1 358 -6 503 180 0 36 chrX 59679860 59679971 -102919959 + L1PA15 LINE L1 6057 6163 -2 5312 168 16 16 chrX 59679972 59680945 -102918985 - Tigger1 DNA MER2_type -1445 973 1 433 281 7 43 chrX 59680957 59681096 -102918834 + L2 LINE L2 3180 3313 0 379 328 39 8 chrX 59681596 59681750 -102918180 - MIR SINE MIR -67 141 20 366 303 60 65 chrX 59682271 59682456 -102917474 + MIR SINE MIR 28 211 -51 246 306 28 0 chrX 59682442 59682514 -102917416 - L2 LINE L2 -37 3276 3203 * 396 0 0 0 chrX 59682539 59682583 -102917347 + (TA)n Simple_repeat Simple_repeat 1 44 0 1615 133 6 70 chrX 59682585 59682812 -102917118 + L1MA2 LINE L1 2692 2898 -4667 1593 206 7 0 chrX 59682812 59683135 -102916795 + AluSq SINE Alu 1 325 0 1615 133 6 70 chrX 59683135 59683220 -102916710 + L1MA2 LINE L1 2898 2987 -4578 711 43 11 0 chrX 59683219 59683311 -102916619 - L1PA8 LINE L1 -200 5972 5880 * 1273 88 0 0 chrX 59683311 59683481 -102916449 + L1PA8 LINE L1 6000 6169 -3 519 156 0 0 chrX 59683501 59683591 -102916339 - L1P LINE L1 -916 5230 5141 12638 174 27 42 chrX 59683601 59686446 -102913484 + L1MA2 LINE L1 2977 5721 -2002 1837 137 74 0 chrX 59686446 59686730 -102913200 + AluSx SINE Alu 1 305 -7 12638 174 27 42 chrX 59686730 59688704 -102911226 + L1MA2 LINE L1 5721 7723 0 2177 219 25 35 chrX 59688713 59689280 -102910650 + L1MA10 LINE L1 5773 6333 -1 269 273 0 0 chrX 59689500 59689566 -102910364 + MIR SINE MIR 83 148 -60 478 256 67 67 chrX 59689659 59689839 -102910091 + MIR SINE MIR 11 190 -72 199 319 21 53 chrX 59690001 59690095 -102909835 + MIR3 SINE MIR 115 205 -3 268 286 39 3 chrX 59690850 59690964 -102908966 + MIR3 SINE MIR 63 181 -27 645 280 42 19 chrX 59691088 59691302 -102908628 - L2 LINE L2 0 3313 3095 714 257 131 5 chrX 59691333 59691555 -102908375 - MIR SINE MIR -9 253 4 620 255 20 7 chrX 59691689 59691842 -102908088 + MIR SINE MIR 50 204 -58 254 239 158 0 chrX 59691925 59692014 -102907916 + MIR SINE MIR 60 161 -47 503 303 81 23 chrX 59692170 59692391 -102907539 - MIR SINE MIR -27 235 2 503 293 0 6 chrX 59692454 59692618 -102907312 - L1M4 LINE L1 -1957 4189 4027 672 263 35 48 chrX 59692618 59692907 -102907023 + pTR5 LTR ERV1 744 1028 -1410 5079 95 60 42 chrX 59693093 59693904 -102906026 + LTR12 LTR ERV1 1 826 0 1909 247 45 27 chrX 59693904 59694572 -102905358 - L1M4 LINE L1 -2115 4031 3352 828 223 85 10 chrX 59694576 59695009 -102904921 + LTR54B LTR ERV1 1 496 -2 887 268 29 29 chrX 59695010 59695391 -102904539 - L1M4 LINE L1 -2796 3350 2970 1916 173 14 8 chrX 59695392 59695761 -102904169 - L1PA15 LINE L1 0 6165 5795 198 0 0 0 chrX 59695764 59695786 -102904144 + (TG)n Simple_repeat Simple_repeat 2 23 0 621 155 4 40 chrX 59695799 59696028 -102903902 + (TA)n Simple_repeat Simple_repeat 1 220 0 20602 108 11 59 chrX 59696030 59699957 -102899973 - L1PA15 LINE L1 -376 5789 2059 3232 232 67 56 chrX 59699958 59700339 -102899591 - L1P LINE L1 -2073 4073 3698 195 69 0 0 chrX 59700339 59700368 -102899562 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3232 232 67 56 chrX 59700368 59701220 -102898710 - L1P LINE L1 -2448 3698 2827 235 128 0 0 chrX 59701226 59701273 -102898657 - LTR66 LTR ERVL -170 440 394 318 287 23 0 chrX 59701283 59701370 -102898560 - L1MC4 LINE L1 -1339 6703 6615 278 267 0 0 chrX 59701373 59701463 -102898467 - L1MC4 LINE L1 -1339 6703 6614 277 289 0 0 chrX 59701399 59701489 -102898441 + L1MC4 LINE L1 6614 6703 -1339 * 342 194 0 0 chrX 59701492 59701564 -102898366 + (TA)n Simple_repeat Simple_repeat 1 72 0 6684 97 7 2 chrX 59701564 59703297 -102896633 - L1PA8 LINE L1 -18 6154 4415 6595 35 0 1 chrX 59703297 59704091 -102895839 + L1PA3 LINE L1 5362 6155 0 20720 156 17 83 chrX 59704092 59708792 -102891138 - L1PA8 LINE L1 -1750 4396 4 1049 219 40 20 chrX 59708792 59709089 -102890841 - L1MDb LINE L1 -5235 1174 872 598 340 54 23 chrX 59709098 59709451 -102890479 - L1MDb LINE L1 -6030 379 16 333 313 76 62 chrX 59709518 59709742 -102890188 + L1M3c LINE L1 102 328 -6302 240 242 48 32 chrX 59709837 59709899 -102890031 + L1MB3 LINE L1 1340 1402 -5251 1866 271 44 36 chrX 59709988 59710964 -102888966 + L1MB3 LINE L1 4046 5029 -1703 32131 46 3 0 chrX 59710965 59715808 -102884122 + L1PA3 LINE L1 1323 6177 0 3076 226 31 29 chrX 59715853 59717011 -102882919 + L1MB3 LINE L1 5033 6196 -570 3648 275 74 41 chrX 59717011 59718040 -102881890 + L1M3c LINE L1 524 1429 -5234 239 0 32 0 chrX 59718040 59718071 -102881859 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3648 275 74 41 chrX 59718071 59718813 -102881117 + L1M3c LINE L1 1429 2145 -4518 1136 174 36 8 chrX 59718908 59719155 -102880775 + L1MA9 LINE L1 6021 6274 -38 1819 174 11 14 chrX 59719160 59719516 -102880414 + L1MB3 LINE L1 6178 6532 -237 6625 158 28 14 chrX 59719610 59720877 -102879053 + L1PA13 LINE L1 3152 4436 -1710 1175 14 14 0 chrX 59720877 59721013 -102878917 + L1PA4 LINE L1 6011 6153 -2 5632 114 34 6 chrX 59721013 59722698 -102877232 + L1PA13 LINE L1 4440 6163 0 2850 119 34 30 chrX 59722698 59723227 -102876703 + L1MA3 LINE L1 5767 6305 0 5767 180 14 19 chrX 59725612 59727854 -102872076 - L1MA4A LINE L1 0 6303 4070 1135 203 28 0 chrX 59727852 59728064 -102871866 + L1M1 LINE L1 130 347 -7218 * 7304 237 20 15 chrX 59728061 59729699 -102870231 - L1PA12 LINE L1 -5154 2430 13 915 189 7 0 chrX 59729882 59730025 -102869905 + AluJb SINE Alu 114 257 -55 6016 170 22 17 chrX 59730522 59731633 -102868297 - MER4B-int LTR ERV1 -2556 4202 3086 2930 191 39 7 chrX 59731693 59732232 -102867698 - MER21A LTR ERV1 0 931 376 1080 131 170 18 chrX 59732237 59732466 -102867464 - MER21A LTR ERV1 -667 264 1 791 196 52 12 chrX 59732466 59732639 -102867291 - L1M1 LINE L1 -7373 192 13 300 226 75 0 chrX 59732639 59732732 -102867198 - L1M4 LINE L1 -1661 4485 4386 2790 251 46 12 chrX 59732733 59733842 -102866088 - L1MB8 LINE L1 -5 6984 5830 1945 251 49 23 chrX 59733907 59734780 -102865150 - L1MB8 LINE L1 -2224 4733 3838 282 280 19 9 chrX 59734789 59734896 -102865034 - L1MB3 LINE L1 -7 6176 6069 14723 112 7 11 chrX 59734954 59738077 -102861853 - L1PA7 LINE L1 0 6469 3377 9692 126 23 32 chrX 59738078 59740397 -102859533 - L1PA7 LINE L1 -3753 2708 364 273 217 11 43 chrX 59740390 59740482 -102859448 - L1MB3 LINE L1 -207 5967 5879 * 5546 262 84 23 chrX 59740470 59740858 -102859072 - L1MB8 LINE L1 -4586 2373 2010 5674 119 20 9 chrX 59740858 59742192 -102857738 - L1PA10 LINE L1 0 6168 4836 5546 262 84 23 chrX 59742192 59743842 -102856088 - L1MB8 LINE L1 -4949 2010 202 2116 166 22 0 chrX 59743842 59744198 -102855732 - THE1B LTR MaLR 0 364 1 5546 262 84 23 chrX 59744198 59744320 -102855610 - L1MB8 LINE L1 -6757 202 89 216 362 74 85 chrX 59744549 59744997 -102854933 + L2 LINE L2 2827 3269 -3 306 293 21 71 chrX 59745960 59746100 -102853830 + MIR SINE MIR 8 140 -122 511 345 30 25 chrX 59746163 59746398 -102853532 - MIR SINE MIR -7 255 20 353 229 104 0 chrX 59747718 59747814 -102852116 + MIR SINE MIR 74 179 -83 189 74 0 0 chrX 59749251 59749278 -102850652 + (GA)n Simple_repeat Simple_repeat 2 28 0 339 272 60 54 chrX 59749910 59750099 -102849831 - MIR SINE MIR -30 232 38 656 323 49 37 chrX 59750571 59750896 -102849034 + L2 LINE L2 2952 3280 -33 15840 45 3 9 chrX 59751834 59754614 -102845316 - L1PA5 LINE L1 -1 6153 3394 663 299 58 11 chrX 59754746 59755007 -102844923 - MLT1L LTR MaLR -342 273 1 319 354 50 38 chrX 59755159 59755399 -102844531 + MIR SINE MIR 2 244 -18 1587 225 14 19 chrX 59755675 59756039 -102843891 + MLT1A1 LTR MaLR 1 362 -3 1812 147 37 37 chrX 59756167 59756522 -102843408 + THE1A LTR MaLR 1 355 0 572 112 22 0 chrX 59756522 59756611 -102843319 + THE1A-int LTR MaLR 1 91 -1489 17861 99 17 3 chrX 59756611 59759066 -102840864 + HERVL LTR ERVL 2049 4536 -1118 2184 188 44 21 chrX 59959866 59960340 -102639590 - MER66B LTR ERV1 -1 485 1 384 303 98 0 chrX 59961082 59961204 -102638726 + MIR3 SINE MIR 14 147 -61 455 292 12 31 chrX 59961578 59961739 -102638191 - MIR SINE MIR 0 262 105 2507 87 0 0 chrX 59963058 59963367 -102636563 - AluSc SINE Alu 0 309 1 593 301 72 17 chrX 59963776 59964012 -102635918 + MIR SINE MIR 1 249 -13 277 325 92 0 chrX 59964663 59964783 -102635147 + L2 LINE L2 2624 2754 -560 481 270 16 48 chrX 59964788 59964977 -102634953 + L1MC4a LINE L1 5760 5942 -1866 323 296 86 67 chrX 59965294 59965804 -102634126 - L3 LINE CR1 -290 1287 702 1429 240 137 8 chrX 59967079 59967466 -102632464 - MLT1F1 LTR MaLR -2 565 129 1255 220 29 10 chrX 59967471 59967785 -102632145 - MER45B DNA AcHobo 0 1040 721 1648 311 56 43 chrX 59968001 59968624 -102631306 - MER45C DNA AcHobo -293 660 30 233 259 0 19 chrX 59968652 59968706 -102631224 - MLT1F1 LTR MaLR -420 122 70 422 296 111 17 chrX 59968832 59969004 -102630926 + L2 LINE L2 3126 3313 0 255 303 20 40 chrX 59969974 59970073 -102629857 + MLT1L LTR MaLR 171 267 -348 213 376 40 27 chrX 59970222 59970371 -102629559 - L2 LINE L2 -832 2482 2332 21 57 0 0 chrX 59970371 59970406 -102629524 + AT_rich Low_complexity Low_complexity 1 35 0 813 220 63 120 chrX 59970816 59971198 -102628732 - MLT1A2 LTR MaLR 0 374 15 1106 278 25 7 chrX 59972237 59972514 -102627416 + MER115 DNA AcHobo 405 686 -7 195 286 0 0 chrX 59974052 59974094 -102625836 + L2 LINE L2 2708 2749 -565 393 303 224 21 chrX 59974170 59974460 -102625470 + L2 LINE L2 2494 2842 -472 294 263 251 23 chrX 59974446 59974617 -102625313 + L2 LINE L2 3104 3313 0 * 1112 294 86 22 chrX 59975331 59975591 -102624339 - L3 LINE CR1 -2 1575 1272 1079 228 20 94 chrX 59975591 59975985 -102623945 - MLT1A1 LTR MaLR 0 365 1 1112 294 86 22 chrX 59975985 59976176 -102623754 - L3 LINE CR1 -305 1272 1095 1074 311 81 5 chrX 59976236 59976644 -102623286 + MLT1J1 LTR MaLR 4 442 -4 734 333 79 32 chrX 59976708 59977179 -102622751 - L3 LINE CR1 -663 914 422 348 344 86 7 chrX 59977353 59977504 -102622426 + MIR3 SINE MIR 23 185 -23 1742 239 16 7 chrX 59977651 59978099 -102621831 + Charlie4a DNA MER1_type 39 490 -18 387 320 108 5 chrX 59978346 59978540 -102621390 - MIR SINE MIR 0 262 49 6343 136 10 65 chrX 59978723 59981868 -102618062 + L1PA7 LINE L1 9 3326 -2828 6082 104 11 0 chrX 59981868 59983062 -102616868 + L1PA7 LINE L1 4948 6151 -3 6343 136 10 65 chrX 59983062 59985384 -102614546 + L1PA7 LINE L1 3326 6142 -12 6343 86 9 0 chrX 59985384 59986269 -102613661 + L1PA7 LINE L1 5262 6154 0 6343 136 10 65 chrX 59986269 59986282 -102613648 + L1PA7 LINE L1 6142 6154 0 264 284 30 0 chrX 59986319 59986386 -102613544 - MLT1J LTR MaLR -204 307 239 328 277 68 47 chrX 59986438 59986586 -102613344 - MLT1J LTR MaLR -360 151 1 405 303 8 17 chrX 59986596 59986715 -102613215 - MIR SINE MIR -122 140 23 753 249 109 3 chrX 59986716 59987009 -102612921 + L1M4c LINE L1 1100 1423 -4961 860 246 39 25 chrX 59987045 59987491 -102612439 + L1M4c LINE L1 2478 2959 -3423 * 1448 196 58 35 chrX 59987486 59987590 -102612340 - L1MDa LINE L1 -4327 2213 2113 2160 116 7 0 chrX 59987590 59987884 -102612046 + AluSx SINE Alu 1 296 -16 1448 196 58 35 chrX 59987884 59988176 -102611754 - L1MDa LINE L1 -4427 2113 1808 829 148 0 32 chrX 59988157 59988312 -102611618 - L1P LINE L1 -2365 3781 3632 * 1456 298 33 33 chrX 59988312 59989031 -102610899 - L1MDa LINE L1 -5429 1111 1 5825 117 9 1 chrX 59989140 59991013 -102608917 + L1PA14 LINE L1 4283 6161 0 1004 264 47 61 chrX 59991025 59991385 -102608545 + MLT1L LTR MaLR 116 470 -145 3195 272 55 33 chrX 59991566 59992762 -102607168 + L1M4 LINE L1 278 1500 -5042 816 256 105 28 chrX 59992953 59993662 -102606268 + L1M4 LINE L1 2284 3051 -3593 357 152 57 0 chrX 59993696 59993801 -102606129 + (TA)n Simple_repeat Simple_repeat 2 112 0 1926 249 97 8 chrX 59993818 59994640 -102605290 + L1M4 LINE L1 4776 5670 -974 805 216 20 31 chrX 59996794 59997096 -102602834 + L1M4 LINE L1 5649 5948 -728 748 329 27 7 chrX 59997080 59997524 -102602406 + L1M4b LINE L1 1 535 -6324 * 1880 257 75 38 chrX 59997566 59998250 -102601680 + L1M4b LINE L1 674 1382 -5477 2276 223 55 42 chrX 59998259 59998883 -102601047 - LTR27 LTR ERV1 -2 634 3 1055 245 23 39 chrX 59998898 59999331 -102600599 + L1M4b LINE L1 1390 1815 -5040 857 98 0 8 chrX 59999350 59999482 -102600448 + L1PA14 LINE L1 6031 6161 0 12124 216 17 19 chrX 59999485 60002800 -102597130 + L1MA1 LINE L1 3413 6721 -844 6009 129 16 3 chrX 60002909 60003877 -102596053 + L1MA1 LINE L1 6736 7716 -5 330 305 94 40 chrX 60003880 60004203 -102595727 + L1M4b LINE L1 2609 2913 -4046 2396 239 59 88 chrX 60004203 60005539 -102594391 + L1M4b LINE L1 3781 5076 -1881 9972 220 38 5 chrX 60005545 60007469 -102592461 + L1M1 LINE L1 17 2004 -5561 1147 107 0 0 chrX 60007473 60007641 -102592289 - L1P LINE L1 -1452 4694 4527 * 1354 84 0 5 chrX 60007640 60007831 -102592099 + L1P LINE L1 4709 4898 -1248 25356 118 19 11 chrX 60007838 60011153 -102588777 + L1PA7 LINE L1 327 3701 -2453 279 0 0 0 chrX 60011153 60011184 -102588746 + (CA)n Simple_repeat Simple_repeat 2 32 0 25356 118 19 11 chrX 60011184 60013660 -102586270 + L1PA7 LINE L1 3701 6154 0 4934 175 12 6 chrX 60013666 60014811 -102585119 + L1MA2 LINE L1 4984 6136 -168 2977 125 8 2 chrX 60014817 60015289 -102584641 - L1PB2 LINE L1 -3 6864 6390 681 144 7 43 chrX 60015290 60015429 -102584501 - L1PA8 LINE L1 0 6172 6039 3941 211 36 6 chrX 60015431 60016864 -102583066 - L1PB2 LINE L1 -471 6396 4932 14257 33 2 0 chrX 60016877 60019305 -102580625 - L1PA4 LINE L1 -10 6145 3652 7362 46 0 1 chrX 60019305 60020244 -102579686 + L1PA4 LINE L1 2713 3650 -2496 * 8095 216 27 10 chrX 60020241 60025973 -102573957 - L1PB2 LINE L1 -1917 4945 3 957 155 22 11 chrX 60025996 60026177 -102573753 + L1MA3 LINE L1 6118 6300 -5 26 0 0 0 chrX 60026177 60026203 -102573727 + AT_rich Low_complexity Low_complexity 1 26 0 3258 224 34 68 chrX 60026203 60026447 -102573483 + L1MB7 LINE L1 4239 4490 -1694 1996 137 0 0 chrX 60026447 60026732 -102573198 - AluSx SINE Alu -23 289 5 3258 224 34 68 chrX 60026732 60027390 -102572540 + L1MB7 LINE L1 4490 5169 -1015 406 160 0 0 chrX 60027390 60027465 -102572465 - L1MA3 LINE L1 -3 6302 6228 3258 224 34 68 chrX 60027465 60028189 -102571741 + L1MB7 LINE L1 5169 5784 -400 2315 106 0 3 chrX 60028189 60028501 -102571429 + AluY SINE Alu 1 311 0 3258 224 34 68 chrX 60028501 60028883 -102571047 + L1MB7 LINE L1 5784 6177 -7 282 246 62 45 chrX 60028891 60029170 -102570760 + L1ME4a LINE L1 5758 6076 -45 315 322 65 29 chrX 60029238 60029483 -102570447 + L1ME LINE L1 5355 5608 -513 634 315 31 19 chrX 60029505 60029762 -102570168 - MIR SINE MIR -2 260 1 2452 205 34 24 chrX 60029762 60030358 -102569572 + pTR5 LTR ERV1 743 1344 -1094 4635 110 95 30 chrX 60030374 60031146 -102568784 + LTR12 LTR ERV1 5 826 0 462 271 36 18 chrX 60031161 60031327 -102568603 + L1ME LINE L1 5631 5799 -322 2181 77 4 0 chrX 60032132 60032406 -102567524 + AluY SINE Alu 22 296 -15 34 72 0 0 chrX 60032463 60032532 -102567398 + AT_rich Low_complexity Low_complexity 1 69 0 568 126 55 16 chrX 60032726 60032853 -102567077 - L1MB3 LINE L1 -2 6181 6050 1556 122 4 0 chrX 60032853 60033078 -102566852 - L1PA13 LINE L1 -6 6157 5927 2504 234 42 9 chrX 60033080 60033750 -102566180 - L1MB3 LINE L1 -139 6044 5353 1911 171 25 3 chrX 60033782 60034139 -102565791 - L1PB3 LINE L1 -14 6140 5776 2482 185 16 14 chrX 60034173 60034350 -102565580 - L1PB3 LINE L1 -590 5561 5386 7242 47 1 0 chrX 60034350 60035825 -102564105 - L1PA4 LINE L1 0 6155 4678 2482 185 16 14 chrX 60035825 60036494 -102563436 - L1PB3 LINE L1 -765 5386 4710 280 73 0 89 chrX 60036494 60036618 -102563312 + (TA)n Simple_repeat Simple_repeat 2 114 0 671 10 10 102 chrX 60036645 60036842 -102563088 + (TA)n Simple_repeat Simple_repeat 2 180 0 301 190 40 40 chrX 60036843 60036943 -102562987 - L1MC4 LINE L1 -1339 6703 6604 276 29 0 88 chrX 60036950 60037018 -102562912 + (TA)n Simple_repeat Simple_repeat 2 63 0 301 152 33 54 chrX 60037019 60037111 -102562819 - L1MC4 LINE L1 -1339 6703 6614 1087 243 3 15 chrX 60037111 60037444 -102562486 - L1PB3 LINE L1 -1443 4703 4375 670 242 6 0 chrX 60037442 60037599 -102562331 + L1PB3 LINE L1 4192 4349 -1797 * 1143 197 34 30 chrX 60037608 60037903 -102562027 - L1M2 LINE L1 -698 5614 5319 1997 222 20 17 chrX 60037915 60038565 -102561365 - L1M2 LINE L1 -1370 4776 3805 * 3132 213 11 11 chrX 60038563 60039324 -102560606 + L1PB4 LINE L1 4195 4955 -1191 3779 199 45 29 chrX 60039438 60040169 -102559761 + L1PB4 LINE L1 4940 5698 -458 2108 122 7 0 chrX 60040169 60040463 -102559467 + AluSx SINE Alu 1 296 -16 3779 199 45 29 chrX 60040463 60040930 -102559000 + L1PB4 LINE L1 5698 6156 0 3564 273 120 7 chrX 60040935 60042667 -102557263 - L1M4c LINE L1 -1636 5008 3081 * 27438 136 26 60 chrX 60042655 60043608 -102556322 - L1PA7 LINE L1 0 6154 5170 221 0 0 33 chrX 60043608 60043638 -102556292 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 27438 136 26 60 chrX 60043638 60045292 -102554638 - L1PA7 LINE L1 -984 5170 3461 294 29 0 0 chrX 60045292 60045327 -102554603 + (TTG)n Simple_repeat Simple_repeat 2 36 0 27438 136 26 60 chrX 60045327 60049098 -102550832 - L1PA7 LINE L1 -2693 3461 12 1217 220 45 43 chrX 60049114 60049133 -102550797 - L1M4c LINE L1 -3548 3096 3079 183 42 0 0 chrX 60049133 60049157 -102550773 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1217 220 45 43 chrX 60049157 60049737 -102550193 - L1M4c LINE L1 -3565 3079 2495 1743 171 23 34 chrX 60049737 60050124 -102549806 - L1MA3 LINE L1 0 6305 5923 1217 220 45 43 chrX 60050124 60050234 -102549696 - L1M4c LINE L1 -4149 2495 2387 2210 170 63 2 chrX 60050302 60050696 -102549234 - MSTB LTR MaLR -8 418 1 3301 241 42 53 chrX 60050696 60052329 -102547601 - L1M4c LINE L1 -4519 2127 492 341 351 105 52 chrX 60052373 60052698 -102547232 - L1M4c LINE L1 -6119 423 82 285 206 134 21 chrX 60052790 60052887 -102547043 - MIR SINE MIR -47 215 108 460 386 28 6 chrX 60053004 60053180 -102546750 + MIR3 SINE MIR 21 200 -8 365 331 43 29 chrX 60053978 60054117 -102545813 + MIR SINE MIR 12 152 -110 222 308 77 0 chrX 60054600 60054691 -102545239 + MIR SINE MIR 136 233 -29 244 340 113 0 chrX 60055005 60055102 -102544828 - MIR SINE MIR -63 145 38 472 294 31 46 chrX 60055307 60055501 -102544429 - MIR SINE MIR -54 208 18 468 51 0 0 chrX 60056147 60056206 -102543724 + (TA)n Simple_repeat Simple_repeat 1 59 0 184 179 0 0 chrX 60057203 60057231 -102542699 - L2 LINE L2 -25 3288 3261 343 194 47 108 chrX 60057290 60057419 -102542511 - MER103 DNA DNA -44 122 2 367 338 32 13 chrX 60057532 60057686 -102542244 - MIR SINE MIR -59 203 47 276 361 33 0 chrX 60057750 60057872 -102542058 + MIR3 SINE MIR 81 206 -2 299 273 68 0 chrX 60058580 60058668 -102541262 - L3 LINE CR1 -15 1562 1469 329 322 25 0 chrX 60058679 60058797 -102541133 + CT-rich Low_complexity Low_complexity 1 121 0 1052 296 61 102 chrX 60058899 60059865 -102540065 + L2 LINE L2 1531 2456 -858 1336 183 38 24 chrX 60059890 60060180 -102539750 + L1MC3 LINE L1 7231 7524 -261 411 307 7 39 chrX 60060181 60060334 -102539596 + L2 LINE L2 2944 3091 -181 891 248 34 0 chrX 60060479 60060685 -102539245 + MER58A DNA MER1_type 1 213 -11 416 293 85 18 chrX 60061174 60061338 -102538592 + MIR3 SINE MIR 6 180 -28 5663 129 0 34 chrX 60061585 60062652 -102537278 - L1PA15 LINE L1 -6 6159 5089 279 200 0 129 chrX 60062713 60062798 -102537132 + MIR3 SINE MIR 133 206 -2 469 313 117 17 chrX 60062909 60063088 -102536842 + MIR SINE MIR 47 243 -19 219 403 0 0 chrX 60064149 60064298 -102535632 + T-rich Low_complexity Low_complexity 1 149 0 * 362 351 6 11 chrX 60064206 60064380 -102535550 + CT-rich Low_complexity Low_complexity 4 176 0 518 252 0 8 chrX 60065122 60065249 -102534681 + MIR SINE MIR 137 262 0 480 188 38 105 chrX 60065355 60065488 -102534442 - MER20 DNA MER1_type -95 124 1 627 209 120 6 chrX 60066261 60066419 -102533511 + MIR3 SINE MIR 33 208 0 378 289 42 40 chrX 60066820 60066957 -102532973 + MIR SINE MIR 14 146 -62 766 271 126 13 chrX 60067085 60067402 -102532528 + L1ME1 LINE L1 5759 6111 -55 900 227 45 42 chrX 60067427 60067713 -102532217 + L1MD3 LINE L1 7399 7685 -310 * 2178 252 49 42 chrX 60067711 60069259 -102530671 + L1MCb LINE L1 305 2308 -4257 2011 163 13 54 chrX 60069275 60069898 -102530032 + L1MA4A LINE L1 4893 5501 -743 * 7507 53 2 4 chrX 60069893 60070865 -102529065 - L1P LINE L1 -1956 4190 3221 7262 44 2 0 chrX 60070861 60072696 -102527234 + L1PA4 LINE L1 4244 6155 0 * 3817 169 43 4 chrX 60072696 60073471 -102526459 + L1MA4A LINE L1 5469 6291 -12 868 259 13 53 chrX 60073483 60073598 -102526332 + AluJb SINE Alu 2 120 -182 1398 56 0 0 chrX 60073598 60073778 -102526152 + (GAA)n Simple_repeat Simple_repeat 1 180 0 868 259 13 53 chrX 60073778 60073963 -102525967 + AluJb SINE Alu 120 290 -12 1434 216 177 9 chrX 60073983 60074618 -102525312 + L1MCa LINE L1 1824 2606 -3948 325 342 86 59 chrX 60074629 60074933 -102524997 + L1M4c LINE L1 31 342 -6042 3192 256 68 28 chrX 60074941 60076901 -102523029 + L1MB2 LINE L1 352 2477 -4169 234 0 0 0 chrX 60076901 60076927 -102523003 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3192 256 68 28 chrX 60076927 60076949 -102522981 + L1MB2 LINE L1 2477 2497 -4149 1905 224 25 6 chrX 60076962 60077435 -102522495 + L1MB2 LINE L1 5074 5555 -1089 * 24540 156 10 16 chrX 60077430 60078658 -102521272 + L1PA8A LINE L1 3 1237 -5209 189 74 0 0 chrX 60078658 60078685 -102521245 + (CAA)n Simple_repeat Simple_repeat 1 27 0 24540 156 10 16 chrX 60078685 60083849 -102516081 + L1PA8A LINE L1 1237 6429 -17 1807 192 36 22 chrX 60083836 60084462 -102515468 + L1MB2 LINE L1 5519 6154 -515 * 1353 96 0 108 chrX 60084470 60084710 -102515220 - AluY SINE Alu -5 306 93 2399 198 62 0 chrX 60084711 60085210 -102514720 + L1MB2 LINE L1 6133 6662 -7 403 284 9 23 chrX 60085217 60085435 -102514495 + L1 LINE L1 3038 3252 -2894 293 210 34 8 chrX 60085460 60085579 -102514351 - L1M4 LINE L1 -2848 3298 3177 * 1894 247 57 25 chrX 60085571 60086090 -102513840 + L1 LINE L1 3619 4163 -1983 252 59 0 0 chrX 60086090 60086124 -102513806 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1894 247 57 25 chrX 60086124 60086236 -102513694 + L1 LINE L1 4163 4270 -1876 17557 173 42 50 chrX 60086238 60088686 -102511244 + L1M1 LINE L1 13 2428 -5137 1960 109 43 30 chrX 60088686 60088990 -102510940 + AluY SINE Alu 1 308 -3 17557 173 42 50 chrX 60088990 60090377 -102509553 + L1M1 LINE L1 2428 3825 -3740 3124 125 10 29 chrX 60090378 60090865 -102509065 - LTR12 LTR ERV1 -236 478 1 2745 228 24 9 chrX 60090865 60091540 -102508390 + L1M1 LINE L1 3820 4504 -3061 705 88 0 0 chrX 60091543 60091634 -102508296 + AluSp SINE Alu 1 91 -222 505 243 13 33 chrX 60091640 60091792 -102508138 + L1MA1 LINE L1 4176 4324 -3241 1445 144 0 0 chrX 60091805 60092013 -102507917 + AluSp SINE Alu 90 297 -16 1538 222 16 9 chrX 60092013 60092459 -102507471 + L1MA1 LINE L1 4498 4946 -2619 * 17016 44 1 1 chrX 60092457 60094599 -102505331 - L1PA3 LINE L1 -2092 4054 1913 10794 39 0 0 chrX 60094597 60096697 -102503233 + L1PA3 LINE L1 4066 6166 0 * 8991 172 13 5 chrX 60096697 60099016 -102500914 + L1MA1 LINE L1 4932 7271 -450 2204 148 5 15 chrX 60099017 60099408 -102500522 + L1MA1 LINE L1 7335 7721 0 277 239 120 21 chrX 60099424 60099551 -102500379 + L1MB5 LINE L1 4255 4399 -1747 4043 41 0 0 chrX 60099551 60100042 -102499888 + L1PA4 LINE L1 5665 6155 0 277 239 120 21 chrX 60100042 60100056 -102499874 + L1MB5 LINE L1 4399 4410 -1736 244 200 118 0 chrX 60100078 60100163 -102499767 + L1MB5 LINE L1 4389 4483 -1663 4863 129 38 25 chrX 60100199 60101062 -102498868 - L1PA13 LINE L1 -6 6157 5284 3405 207 40 118 chrX 60101062 60102801 -102497129 + L1MB5 LINE L1 4531 6138 -36 297 313 10 25 chrX 60102842 60103040 -102496890 + L1M4 LINE L1 2281 2475 -3671 13670 160 12 18 chrX 60103045 60104459 -102495471 - Tigger1 DNA MER2_type 0 2418 1022 9192 91 6 0 chrX 60104459 60106537 -102493393 + L1PA6 LINE L1 4073 6154 0 13670 160 12 18 chrX 60106537 60107525 -102492405 - Tigger1 DNA MER2_type -1396 1022 30 1545 249 11 29 chrX 60107540 60107998 -102491932 + L1M4 LINE L1 2480 2929 -3217 1104 174 0 14 chrX 60107998 60108205 -102491725 + L1PA13 LINE L1 5957 6160 -3 1545 249 11 29 chrX 60108205 60108273 -102491657 + L1M4 LINE L1 2929 2997 -3149 * 2073 250 29 19 chrX 60108270 60108950 -102490980 + L1M4 LINE L1 3315 4001 -2145 436 173 71 8 chrX 60108953 60109080 -102490850 + L1MA3 LINE L1 3074 3208 -2938 3941 74 0 4 chrX 60109081 60109607 -102490323 + L1PA7 LINE L1 5307 5830 -324 42776 51 1 4 chrX 60109608 60115781 -102484149 + L1PA4 LINE L1 1 6151 -4 676 111 0 0 chrX 60115807 60115906 -102484024 + L1PA7 LINE L1 5814 5912 -242 2115 113 3 0 chrX 60115907 60116217 -102483713 + L1PA7 LINE L1 5841 6151 -3 9910 176 20 10 chrX 60116217 60116535 -102483395 + L1MA3 LINE L1 3200 3513 -2792 1476 178 65 54 chrX 60116535 60116906 -102483024 + THE1C LTR MaLR 1 375 0 9910 176 20 10 chrX 60116906 60117056 -102482874 + L1MA3 LINE L1 3513 3660 -2645 1852 140 0 0 chrX 60117056 60117328 -102482602 + AluSg SINE Alu 1 272 -38 840 63 0 0 chrX 60117329 60117440 -102482490 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 9910 176 20 10 chrX 60117440 60120039 -102479891 + L1MA3 LINE L1 3659 6305 0 985 226 85 11 chrX 60120022 60120305 -102479625 + L1M4 LINE L1 3957 4260 -1886 * 1249 223 110 16 chrX 60120327 60120581 -102479349 - L1MC4a LINE L1 -450 7358 7057 2316 170 35 14 chrX 60120581 60121004 -102478926 - MSTB1 LTR MaLR 0 432 1 1249 223 110 16 chrX 60121004 60121121 -102478809 - L1MC4a LINE L1 -751 7057 6952 362 144 102 30 chrX 60121133 60121300 -102478630 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 504 155 56 0 chrX 60121350 60121511 -102478419 + (TA)n Simple_repeat Simple_repeat 2 171 0 2292 215 79 22 chrX 60121544 60121795 -102478135 + L1MC3 LINE L1 7100 7335 -450 977 200 10 10 chrX 60121795 60122000 -102477930 + L1PB4 LINE L1 5948 6152 -4 2292 215 79 22 chrX 60122000 60122381 -102477549 + L1MC3 LINE L1 7335 7768 -17 1872 154 19 69 chrX 60123435 60123811 -102476119 - L1PA16 LINE L1 -9 6157 5801 271 266 114 19 chrX 60124102 60124260 -102475670 - L1ME4a LINE L1 -224 5897 5725 181 204 102 0 chrX 60124493 60124542 -102475388 - MER5C DNA MER1_type -241 83 30 835 148 106 5 chrX 60124866 60125055 -102474875 + L1MC3 LINE L1 7392 7599 -186 2397 252 84 31 chrX 60125421 60125650 -102474280 + L1MDb LINE L1 783 999 -5407 620 38 13 0 chrX 60125650 60125762 -102474168 + L1PA4 LINE L1 6063 6175 0 2397 252 84 31 chrX 60125762 60126712 -102473218 + L1MDb LINE L1 999 2004 -4402 * 4446 186 32 26 chrX 60126710 60127895 -102472035 - L1PA16 LINE L1 -689 5611 4416 2132 142 0 0 chrX 60127895 60128205 -102471725 - AluSx SINE Alu -2 310 1 4446 186 32 26 chrX 60128205 60128267 -102471663 - L1PA16 LINE L1 -1884 4416 4356 3240 135 30 7 chrX 60128274 60128836 -102471094 + L1MA4 LINE L1 5658 6232 -68 1324 204 28 60 chrX 60128837 60129155 -102470775 - MSTB1 LTR MaLR -124 308 1 808 178 19 13 chrX 60129155 60129312 -102470618 - L1MD2 LINE L1 -456 5903 5746 323 284 50 20 chrX 60129310 60129511 -102470419 - L1MDa LINE L1 -4204 2336 2130 * 956 189 31 25 chrX 60129550 60129746 -102470184 + MSTB1 LTR MaLR 236 432 0 838 219 112 9 chrX 60129746 60129970 -102469960 + L1MD2 LINE L1 5899 6145 -214 385 244 0 0 chrX 60129974 60130060 -102469870 + L1MD2 LINE L1 6195 6280 -79 25 51 0 0 chrX 60130137 60130176 -102469754 + AT_rich Low_complexity Low_complexity 1 39 0 10633 153 20 24 chrX 60130183 60132658 -102467272 + L1P3 LINE L1 6 2477 -3984 4751 103 3 3 chrX 60132658 60133360 -102466570 - L1PA4 LINE L1 -2166 3980 3279 2647 51 37 0 chrX 60133354 60133910 -102466020 + L1PA4 LINE L1 3984 6150 -5 * 7607 77 2 1 chrX 60133911 60135751 -102464179 + L1PA6 LINE L1 4316 6154 0 20815 119 10 2 chrX 60135789 60139038 -102460892 + L1P3 LINE L1 2463 5735 -755 5462 165 12 16 chrX 60139169 60140923 -102459007 - L1PB1 LINE L1 -1 6150 4401 666 25 0 0 chrX 60140923 60141003 -102458927 + (TATTG)n Simple_repeat Simple_repeat 2 81 0 5462 165 12 16 chrX 60141003 60141085 -102458845 - L1PB1 LINE L1 -1750 4401 4320 1547 220 13 0 chrX 60141080 60141466 -102458464 + L1 LINE L1 2792 3182 -2964 * 2804 196 40 2 chrX 60141467 60142048 -102457882 + L1 LINE L1 3743 4345 -1801 347 265 24 12 chrX 60142189 60142272 -102457658 - MIR SINE MIR -68 140 57 227 188 0 21 chrX 60142685 60142733 -102457197 + CT-rich Low_complexity Low_complexity 2 48 0 273 75 0 0 chrX 60142733 60142773 -102457157 + (CA)n Simple_repeat Simple_repeat 1 40 0 4155 92 2 0 chrX 60143100 60143653 -102456277 - MER41A LTR ERV1 0 554 1 275 272 184 9 chrX 60143675 60143789 -102456141 - MIR SINE MIR -56 152 19 400 260 193 20 chrX 60144945 60145095 -102454835 - MER45A DNA AcHobo -1 177 2 213 39 0 0 chrX 60145987 60146013 -102453917 + (A)n Simple_repeat Simple_repeat 1 26 0 239 362 61 63 chrX 60146771 60147307 -102452623 - L2 LINE L2 -9 3263 2728 191 309 198 19 chrX 60147357 60147519 -102452411 + L2 LINE L2 2707 2897 -417 219 69 0 0 chrX 60147528 60147557 -102452373 + (CCCTAA)n Simple_repeat Simple_repeat 1 29 0 304 224 0 24 chrX 60147977 60148062 -102451868 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 49 32 0 0 chrX 60148062 60148125 -102451805 + AT_rich Low_complexity Low_complexity 1 63 0 222 218 39 0 chrX 60148126 60148282 -102451648 + (TA)n Simple_repeat Simple_repeat 2 163 0 306 128 64 0 chrX 60148402 60148496 -102451434 + (TA)n Simple_repeat Simple_repeat 1 100 0 357 367 78 0 chrX 60149175 60149355 -102450575 + L2 LINE L2 2890 3083 -189 311 272 81 15 chrX 60149481 60149617 -102450313 + MLT1J1 LTR MaLR 93 237 -209 626 187 42 169 chrX 60149674 60149958 -102449972 - MLT1A1 LTR MaLR -114 251 4 2527 91 28 3 chrX 60149992 60150353 -102449577 + L1PA11 LINE L1 5803 6172 -2 210 207 35 17 chrX 60150366 60150424 -102449506 - L2 LINE L2 0 3272 3214 * 250 296 63 63 chrX 60150419 60150472 -102449458 - MIR SINE MIR -100 162 110 300 111 0 0 chrX 60150472 60150517 -102449413 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 250 296 63 63 chrX 60150517 60150622 -102449308 - MIR SINE MIR -151 111 4 293 356 0 41 chrX 60150909 60151055 -102448875 - L2 LINE L2 -223 3049 2910 461 250 205 6 chrX 60151723 60151879 -102448051 + MIR SINE MIR 28 214 -48 376 339 0 8 chrX 60151974 60152098 -102447832 - L2 LINE L2 0 3313 3191 238 235 78 69 chrX 60152149 60152251 -102447679 + MIR SINE MIR 118 220 -42 238 286 36 12 chrX 60153255 60153339 -102446591 + MLT1K LTR MaLR 180 265 -323 444 203 11 170 chrX 60154112 60154174 -102445756 + MIR SINE MIR 2 72 -190 688 221 0 0 chrX 60154174 60154305 -102445625 + FLAM_A SINE Alu 1 131 -2 444 203 11 170 chrX 60154305 60154424 -102445506 + MIR SINE MIR 72 154 -108 851 257 33 14 chrX 60155596 60155806 -102444124 + MIR SINE MIR 12 225 -37 280 213 0 88 chrX 60155821 60155858 -102444072 + MIR SINE MIR 189 217 -45 2006 151 0 10 chrX 60155858 60156192 -102443738 + AluSx SINE Alu 1 312 0 280 213 0 88 chrX 60156192 60156234 -102443696 + MIR SINE MIR 217 261 -1 480 286 0 67 chrX 60157316 60157494 -102442436 + MIR SINE MIR 65 230 -32 246 264 28 85 chrX 60158192 60158298 -102441632 + MIR SINE MIR 104 203 -59 259 308 38 50 chrX 60158331 60158490 -102441440 - MIR SINE MIR -49 213 57 428 297 14 20 chrX 60158641 60158799 -102441131 + MIR SINE MIR 8 167 -41 2232 110 0 0 chrX 60158945 60159235 -102440695 - AluSg SINE Alu -20 290 1 206 200 0 0 chrX 60159287 60159322 -102440608 + L2 LINE L2 3203 3237 -35 203 361 33 70 chrX 60159554 60159798 -102440132 - L2 LINE L2 -231 3041 2807 871 232 40 119 chrX 60159846 60160216 -102439714 + MER102b DNA MER1_type 1 341 0 264 237 0 70 chrX 60160228 60160342 -102439588 - L2 LINE L2 -570 2744 2639 499 269 15 30 chrX 60160557 60160691 -102439239 + L2 LINE L2 3141 3272 0 804 309 113 21 chrX 60160836 60161380 -102438550 - L2 LINE L2 0 3272 2688 3029 231 68 33 chrX 60161383 60162663 -102437267 + L1ME1 LINE L1 4835 6159 -7 296 318 95 50 chrX 60162669 60162848 -102437082 - L2 LINE L2 -610 2704 2518 228 182 0 0 chrX 60165177 60165221 -102434709 + G-rich Low_complexity Low_complexity 4 47 0 304 348 0 0 chrX 60165605 60165740 -102434190 + C-rich Low_complexity Low_complexity 1 135 0 206 163 23 0 chrX 60166013 60166056 -102433874 + A-rich Low_complexity Low_complexity 2 45 0 664 48 0 29 chrX 60166591 60166694 -102433236 + (CAG)n Simple_repeat Simple_repeat 3 102 0 492 86 0 0 chrX 60167771 60167841 -102432089 + (CGG)n Simple_repeat Simple_repeat 2 71 0 207 0 0 0 chrX 60172276 60172299 -102427631 + (T)n Simple_repeat Simple_repeat 1 23 0 230 75 50 0 chrX 60172391 60172431 -102427499 + (TCTCTG)n Simple_repeat Simple_repeat 4 45 0 4745 174 37 34 chrX 60173291 60175184 -102424746 - L1MB8 LINE L1 -5 6173 4282 1820 136 0 0 chrX 60175928 60176185 -102423745 + AluSq SINE Alu 1 257 -56 282 230 32 127 chrX 60176215 60176341 -102423589 - L2 LINE L2 -6 3266 3153 260 298 81 8 chrX 60177443 60177567 -102422363 - MIR SINE MIR -108 154 22 1885 250 81 65 chrX 60177771 60178760 -102421170 - L2 LINE L2 -3 3310 2308 394 344 0 55 chrX 60178812 60178995 -102420935 - MIR3 SINE MIR -23 185 13 462 291 8 0 chrX 60179278 60179412 -102420518 - MIR3 SINE MIR -9 199 65 535 277 230 14 chrX 60179530 60179743 -102420187 - MIR SINE MIR 0 262 4 896 276 14 0 chrX 60180075 60180292 -102419638 - MIR SINE MIR -35 227 8 324 330 39 10 chrX 60180413 60180516 -102419414 - MIR3 SINE MIR -95 113 8 197 275 29 43 chrX 60182467 60182536 -102417394 + L2 LINE L2 3244 3311 -2 218 246 29 29 chrX 60182540 60182609 -102417321 + L3 LINE CR1 941 1009 -568 786 185 40 65 chrX 60182728 60182928 -102417002 - MER2 DNA MER2_type -145 200 6 207 333 14 0 chrX 60182942 60183011 -102416919 + L3 LINE CR1 1013 1082 -495 244 266 139 70 chrX 60183043 60183201 -102416729 + L3 LINE CR1 1209 1377 -200 2015 116 36 10 chrX 60183203 60183382 -102416548 - AluSq SINE Alu -3 310 118 233 29 29 0 chrX 60183382 60183416 -102416514 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2015 116 36 10 chrX 60183416 60183538 -102416392 - AluSq SINE Alu -195 118 1 744 270 147 0 chrX 60183598 60183624 -102416306 + MER102a DNA MER1_type 32 53 -1364 459 52 0 0 chrX 60183624 60183682 -102416248 + (TG)n Simple_repeat Simple_repeat 2 59 0 744 270 147 0 chrX 60183682 60183914 -102416016 + MER102a DNA MER1_type 53 328 -2 406 277 179 36 chrX 60184017 60184212 -102415718 + MIR SINE MIR 34 256 -6 202 310 181 60 chrX 60184265 60184381 -102415549 + L3 LINE CR1 1426 1555 -22 605 296 43 31 chrX 60184514 60184771 -102415159 + MIR SINE MIR 3 262 0 836 209 0 6 chrX 60185735 60185907 -102414023 - L1P LINE L1 -2677 3469 3299 377 305 18 43 chrX 60186807 60186971 -102412959 - MIR SINE MIR -48 214 55 1687 177 30 0 chrX 60186996 60187267 -102412663 - AluSx SINE Alu -33 279 1 308 320 80 8 chrX 60187480 60187605 -102412325 - L2 LINE L2 -5 3267 3134 396 309 47 26 chrX 60188092 60188283 -102411647 - MIR SINE MIR -15 247 53 313 331 39 16 chrX 60188906 60189033 -102410897 + MIR SINE MIR 20 149 -113 277 275 84 54 chrX 60189570 60189737 -102410193 - MIR3 SINE MIR -4 204 33 220 196 65 0 chrX 60193280 60193326 -102406604 + MIR SINE MIR 118 166 -96 448 291 14 14 chrX 60194206 60194347 -102405583 - MIR SINE MIR -74 188 48 318 268 31 11 chrX 60194951 60195058 -102404872 - MIR SINE MIR -58 150 65 4512 165 25 60 chrX 60198187 60199140 -102400790 - L1MB8 LINE L1 0 6178 5259 402 308 157 20 chrX 60199777 60199975 -102399955 + MIR SINE MIR 19 243 -19 466 260 49 79 chrX 60200225 60200454 -102399476 - MIR3 SINE MIR -42 220 1 485 288 20 20 chrX 60251490 60251636 -102348294 - MIR SINE MIR -112 150 5 192 307 133 0 chrX 60251873 60251948 -102347982 - L2 LINE L2 -47 3225 3141 207 214 0 0 chrX 60253193 60253235 -102346695 - MIR SINE MIR -12 250 209 189 0 0 0 chrX 60253240 60253261 -102346669 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 296 184 68 117 chrX 60253397 60253560 -102346370 - MER112 DNA MER1_type -35 225 71 859 211 18 18 chrX 60253757 60253980 -102345950 + MER33 DNA MER1_type 1 215 -97 1943 109 0 11 chrX 60253980 60254254 -102345676 + AluSc SINE Alu 17 287 -22 252 0 0 0 chrX 60254256 60254284 -102345646 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 245 233 23 0 chrX 60254284 60254370 -102345560 + L1MC4 LINE L1 6616 6703 -1339 401 207 9 0 chrX 60254372 60254483 -102345447 + MER33 DNA MER1_type 213 324 0 1069 316 107 33 chrX 60254845 60255482 -102344448 - L3 LINE CR1 -202 1375 692 3831 219 11 1 chrX 60256367 60257262 -102342668 + L1 LINE L1 4436 5339 -807 1052 53 0 40 chrX 60257262 60257411 -102342519 + L1PA5 LINE L1 6011 6154 0 1603 25 36 5 chrX 60257411 60257595 -102342335 - L1PA3 LINE L1 -327 5828 5636 2940 40 0 0 chrX 60257595 60257946 -102341984 + L1PA3 LINE L1 5803 6155 0 2076 74 11 0 chrX 60257946 60258230 -102341700 + L1P5 LINE L1 5342 5628 -523 599 61 0 0 chrX 60258473 60258555 -102341375 - L1PA5 LINE L1 -3 6151 6070 507 327 105 12 chrX 60258666 60258914 -102341016 - L3 LINE CR1 -239 1338 1068 24 0 0 0 chrX 60259043 60259067 -102340863 + AT_rich Low_complexity Low_complexity 1 24 0 2016 153 7 0 chrX 60259887 60260182 -102339748 - AluSx SINE Alu -15 297 1 205 274 0 0 chrX 60260631 60260693 -102339237 + A-rich Low_complexity Low_complexity 1 62 0 * 224 228 0 18 chrX 60260657 60260714 -102339216 + GA-rich Low_complexity Low_complexity 2 57 0 432 268 84 7 chrX 60262083 60262225 -102337705 + MIR SINE MIR 106 258 -4 760 60 0 0 chrX 60262261 60262361 -102337569 + L1PA4 LINE L1 6056 6155 0 2270 110 3 0 chrX 60262731 60263032 -102336898 - AluSp SINE Alu -11 302 1 247 353 65 22 chrX 60263064 60263248 -102336682 + L2 LINE L2 2638 2829 -485 214 319 170 21 chrX 60263456 60263697 -102336233 - L2 LINE L2 -92 3221 2945 561 343 113 18 chrX 60263867 60264249 -102335681 - L2 LINE L2 -450 2864 2447 437 291 50 70 chrX 60264417 60264561 -102335369 - MIR SINE MIR -2 260 120 2429 80 0 3 chrX 60264561 60264875 -102335055 + AluSp SINE Alu 1 313 0 437 291 50 70 chrX 60264875 60264929 -102335001 - MIR SINE MIR -142 120 66 22 0 0 0 chrX 60265207 60265229 -102334701 + AT_rich Low_complexity Low_complexity 1 22 0 309 247 0 52 chrX 60265409 60265486 -102334444 + MIR SINE MIR 2 74 -188 305 275 0 0 chrX 60266933 60267013 -102332917 + MER116 DNA Mariner 1 80 0 788 293 69 0 chrX 60267154 60267386 -102332544 - MIR SINE MIR -11 251 4 317 293 59 31 chrX 60267647 60267903 -102332027 - L1ME4a LINE L1 -152 5969 5707 219 114 0 0 chrX 60267906 60267941 -102331989 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 390 338 31 12 chrX 60267946 60268106 -102331824 - L1ME4a LINE L1 -2140 5668 5506 568 334 126 20 chrX 60268122 60268463 -102331467 + L3 LINE CR1 1116 1492 -85 845 148 0 0 chrX 60268467 60268589 -102331341 - FLAM_A SINE Alu -10 123 2 436 322 87 11 chrX 60269001 60269184 -102330746 + MIR3 SINE MIR 1 197 -11 192 246 0 35 chrX 60269314 60269371 -102330559 + L2 LINE L2 3213 3267 -5 2410 147 41 12 chrX 60270563 60270977 -102328953 - MSTB LTR MaLR 0 426 1 7938 176 62 32 chrX 60270981 60272201 -102327729 - MSTB-int LTR MaLR -4 1647 367 2748 134 12 30 chrX 60272201 60272694 -102327236 + L1PB2 LINE L1 5665 6148 -3 7938 176 62 32 chrX 60272694 60273072 -102326858 - MSTB-int LTR MaLR -1284 367 2 2085 197 31 10 chrX 60273073 60273489 -102326441 - MSTB LTR MaLR 0 426 2 206 385 74 0 chrX 60273588 60273710 -102326220 - MIR3 SINE MIR -48 160 30 321 376 15 20 chrX 60274322 60274524 -102325406 + L2 LINE L2 2153 2353 -961 730 296 106 38 chrX 60274529 60274952 -102324978 - LTR33 LTR ERVL -3 518 67 204 261 0 0 chrX 60275003 60275068 -102324862 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 1995 146 0 0 chrX 60275107 60275395 -102324535 - AluSx SINE Alu -24 288 1 190 349 116 12 chrX 60275765 60275851 -102324079 - MIR SINE MIR -146 116 22 296 264 91 27 chrX 60276173 60276283 -102323647 + MIR SINE MIR 22 138 -70 7460 250 54 19 chrX 60276355 60278790 -102321140 + L1M2b LINE L1 508 3097 -4111 279 0 0 0 chrX 60278790 60278821 -102321109 + (CA)n Simple_repeat Simple_repeat 2 32 0 7460 250 54 19 chrX 60278821 60279051 -102320879 + L1M2b LINE L1 3097 3318 -3890 479 194 30 22 chrX 60279180 60279314 -102320616 - L1MA10 LINE L1 -2 6332 6198 2734 245 18 18 chrX 60279354 60280229 -102319701 - L1ME1 LINE L1 -167 5999 5127 387 295 7 43 chrX 60280505 60280644 -102319286 + MIR3 SINE MIR 8 141 -67 2345 96 0 10 chrX 60280681 60280982 -102318948 + AluSx SINE Alu 1 298 -14 365 153 14 0 chrX 60280997 60281069 -102318861 + (TG)n Simple_repeat Simple_repeat 2 74 0 368 247 13 0 chrX 60281075 60281152 -102318778 - L2 LINE L2 -17 3255 3178 4520 153 23 13 chrX 60281686 60282947 -102316983 + L1MA3 LINE L1 4718 5991 -314 2967 195 69 21 chrX 60283051 60283750 -102316180 + L1MC2 LINE L1 5606 6337 -7 220 236 36 0 chrX 60283934 60283989 -102315941 - MIR SINE MIR -47 215 159 281 133 33 0 chrX 60284159 60284219 -102315711 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 234 0 0 0 chrX 60284317 60284343 -102315587 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 607 118 0 0 chrX 60284585 60284670 -102315260 - Tigger3b DNA MER2_type -807 424 340 308 171 63 0 chrX 60284670 60284765 -102315165 - AluSp/q SINE Alu -21 282 233 890 215 5 14 chrX 60284772 60284986 -102314944 - L1MD1 LINE L1 -406 5836 5625 799 225 101 42 chrX 60285017 60285444 -102314486 - L1MC5 LINE L1 -58 7903 7452 414 0 0 0 chrX 60285543 60285589 -102314341 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1127 70 0 0 chrX 60285591 60285734 -102314196 - L1PA7 LINE L1 -20 6134 5992 318 210 150 10 chrX 60285837 60285937 -102313993 - L1ME1 LINE L1 -1139 5007 4894 5453 112 4 22 chrX 60285938 60287205 -102312725 - L1PA11 LINE L1 0 6174 4875 3632 220 33 19 chrX 60287499 60288741 -102311189 - L1MB8 LINE L1 -5 6173 4916 860 229 5 25 chrX 60288737 60288938 -102310992 + L1MB8 LINE L1 4748 4944 -1202 * 1163 206 64 58 chrX 60288936 60289436 -102310494 - L1MB8 LINE L1 -2944 3202 2700 6814 56 1 1 chrX 60289561 60290422 -102309508 + L1PA5 LINE L1 5294 6154 0 8931 116 7 16 chrX 60290435 60291860 -102308070 - L1P LINE L1 -1718 4428 3017 627 112 0 0 chrX 60291860 60291958 -102307972 + L1P LINE L1 4423 4520 -1626 11960 58 3 7 chrX 60292059 60294389 -102305541 + L1PA5 LINE L1 3828 6154 0 300 304 59 7 chrX 60294392 60294527 -102305403 + L1M4 LINE L1 2956 3097 -3049 1467 230 84 5 chrX 60294787 60295204 -102304726 - L1MDa LINE L1 -1262 5278 4829 319 311 0 0 chrX 60295211 60295301 -102304629 + L1MC4 LINE L1 6614 6703 -1339 216 0 0 0 chrX 60295304 60295328 -102304602 + (TA)n Simple_repeat Simple_repeat 1 24 0 372 239 75 19 chrX 60295334 60295493 -102304437 - L1MDa LINE L1 -1723 4817 4650 2089 98 13 53 chrX 60295493 60295811 -102304119 + AluSg SINE Alu 2 306 -4 2269 220 39 60 chrX 60295822 60297459 -102302471 - L1MDa LINE L1 -3171 3369 1763 336 295 159 62 chrX 60297570 60297797 -102302133 + L2 LINE L2 3019 3267 -5 487 309 67 12 chrX 60298271 60298436 -102301494 - MIR3 SINE MIR -7 201 28 567 325 24 5 chrX 60298623 60298847 -102301083 + MIR SINE MIR 37 262 0 407 359 14 14 chrX 60299244 60299389 -102300541 + MIR3 SINE MIR 16 160 -48 249 271 0 0 chrX 60300686 60300734 -102299196 + L2 LINE L2 3252 3299 -14 343 274 2 12 chrX 60300752 60300849 -102299081 + MIR SINE MIR 66 144 -64 678 268 93 32 chrX 60301162 60301408 -102298522 + MIR SINE MIR 2 262 0 288 287 11 11 chrX 60302203 60302297 -102297633 - MIR SINE MIR -16 246 153 217 204 273 0 chrX 60302656 60302744 -102297186 + MER5A DNA MER1_type 1 112 -77 510 302 50 70 chrX 60303563 60304410 -102295520 - HAL1 LINE L1 -856 1651 822 264 267 0 0 chrX 60304667 60304742 -102295188 - L1MCa LINE L1 -3381 3045 2971 316 214 0 14 chrX 60304746 60304816 -102295114 - L1MCa LINE L1 -4362 2064 1996 31 88 0 0 chrX 60304859 60304939 -102294991 + AT_rich Low_complexity Low_complexity 1 80 0 3207 140 19 44 chrX 60305380 60305737 -102294193 + HSMAR2 DNA Mariner 719 1057 -245 2010 130 0 7 chrX 60305737 60306021 -102293909 + AluSq SINE Alu 1 282 -31 3207 140 19 44 chrX 60306021 60306255 -102293675 + HSMAR2 DNA Mariner 1057 1295 -7 228 121 0 0 chrX 60306886 60306919 -102293011 - THE1A LTR MaLR 0 355 323 1950 138 21 6 chrX 60306949 60307274 -102292656 - THE1-int LTR MaLR 0 1580 1251 377 98 0 0 chrX 60307377 60307428 -102292502 - THE1-int LTR MaLR -340 1240 1190 337 29 6 6 chrX 60307428 60307482 -102292448 - THE1A LTR MaLR -310 54 1 280 234 39 0 chrX 60307927 60308004 -102291926 - MER116 DNA Mariner 0 80 1 2054 192 57 7 chrX 60308083 60308489 -102291441 - MSTB LTR MaLR 0 426 1 478 248 11 118 chrX 60308755 60309102 -102290828 - L1MCa LINE L1 -5300 1129 820 290 85 0 21 chrX 60309265 60309312 -102290618 + (GGA)n Simple_repeat Simple_repeat 1 46 0 237 159 0 0 chrX 60309303 60309347 -102290583 + GA-rich Low_complexity Low_complexity 1 44 0 * 1631 282 38 33 chrX 60309867 60310558 -102289372 - L1MCc LINE L1 -4887 1536 653 1033 291 45 50 chrX 60310656 60311038 -102288892 - L1MCc LINE L1 -5813 610 231 846 308 80 45 chrX 60311044 60311987 -102287943 - L1MDa LINE L1 -2485 4055 3080 367 301 97 32 chrX 60312137 60312491 -102287439 - L1MDa LINE L1 -3829 2711 2341 546 295 110 9 chrX 60312569 60312796 -102287134 + MIR SINE MIR 3 252 -10 25 0 0 0 chrX 60313031 60313056 -102286874 + AT_rich Low_complexity Low_complexity 1 25 0 552 224 281 5 chrX 60313463 60313655 -102286275 - MIR SINE MIR 0 262 18 1025 73 0 0 chrX 60313838 60313975 -102285955 - L1P LINE L1 -1593 4553 4417 16700 51 6 1 chrX 60313976 60316110 -102283820 + L1P LINE L1 2285 4428 -1718 3046 271 87 29 chrX 60316108 60317884 -102282046 - L1 LINE L1 -3324 2646 1047 * 1995 135 0 0 chrX 60317884 60318208 -102281722 - AluSg SINE Alu 0 324 1 3046 271 87 29 chrX 60318208 60319047 -102280883 - L1 LINE L1 -4923 1047 258 234 26 0 0 chrX 60319259 60319298 -102280632 + L1PA3 LINE L1 6117 6155 0 1240 56 6 34 chrX 60319486 60319665 -102280265 + L1PA4 LINE L1 5982 6155 0 390 293 93 21 chrX 60320044 60320184 -102279746 + L2 LINE L2 3115 3264 -8 785 247 33 31 chrX 60320909 60321289 -102278641 + LTR16A LTR ERVL 18 444 -6 292 218 39 13 chrX 60321494 60321572 -102278358 + HERVFH21 LTR ERV1 6 85 -6444 187 281 53 0 chrX 60321594 60321651 -102278279 - MIR SINE MIR -86 176 117 17210 108 1 9 chrX 60321656 60324286 -102275644 - L1PA8 LINE L1 -992 5154 2544 4317 90 12 3 chrX 60324279 60324953 -102274977 + L1PA8 LINE L1 5173 5861 -311 * 277 250 0 15 chrX 60324968 60325036 -102274894 - MIR SINE MIR -164 98 32 498 301 61 6 chrX 60325567 60325730 -102274200 + MER58A DNA MER1_type 7 178 -46 265 103 0 0 chrX 60325830 60325869 -102274061 + MER58A DNA MER1_type 172 210 -14 6029 20 0 3 chrX 60325869 60326569 -102273361 - L1PA2 LINE L1 -4 6151 5454 315 248 48 9 chrX 60326588 60326693 -102273237 - L1ME3A LINE L1 -214 5956 5848 21 57 0 0 chrX 60326783 60326818 -102273112 + AT_rich Low_complexity Low_complexity 1 35 0 29 60 0 0 chrX 60326851 60326901 -102273029 + AT_rich Low_complexity Low_complexity 1 50 0 26676 82 11 1 chrX 60327118 60330725 -102269205 + L1PA7 LINE L1 1 3643 -2503 2905 116 0 2 chrX 60330825 60331319 -102268611 + L1PA7 LINE L1 5185 5677 -477 7214 48 1 0 chrX 60331319 60332345 -102267585 + L1PA4 LINE L1 5161 6187 0 3400 81 2 6 chrX 60332345 60332816 -102267114 + L1PA7 LINE L1 5679 6147 -7 8015 216 42 15 chrX 60332819 60336221 -102263709 + L1MA8 LINE L1 2807 6291 0 2933 165 11 16 chrX 60336221 60336790 -102263140 + L1MB1 LINE L1 5601 6168 0 3568 44 2 0 chrX 60336864 60337297 -102262633 - L1PA5 LINE L1 -7 6147 5714 398 273 25 12 chrX 60337442 60337603 -102262327 - L1PA16 LINE L1 -106 6060 5898 315 0 0 0 chrX 60337650 60337685 -102262245 + (T)n Simple_repeat Simple_repeat 1 35 0 331 366 18 30 chrX 60338055 60338219 -102261711 + MER5B DNA MER1_type 17 178 0 324 0 0 0 chrX 60339069 60339105 -102260825 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 337 107 30 chrX 60340004 60340173 -102259757 + L2 LINE L2 2870 3051 -221 509 251 86 34 chrX 60340377 60340552 -102259378 + MIR SINE MIR 7 190 -72 427 254 25 16 chrX 60340825 60340947 -102258983 - MIR3 SINE MIR -11 197 75 223 260 13 39 chrX 60341075 60341152 -102258778 - MIR SINE MIR -165 97 23 2286 170 9 41 chrX 60341276 60341740 -102258190 - LTR2 LTR ERV1 0 449 1 666 256 30 6 chrX 60341918 60342086 -102257844 + MIR SINE MIR 91 262 0 229 180 180 10 chrX 60342151 60342251 -102257679 + L1MEc LINE L1 2288 2404 -3992 370 296 56 32 chrX 60342587 60342712 -102257218 - L3 LINE CR1 -215 1362 1235 190 288 150 12 chrX 60342850 60342930 -102257000 - L2 LINE L2 -48 3224 3134 246 352 38 0 chrX 60343172 60343277 -102256653 - L2 LINE L2 -832 2482 2374 230 307 40 0 chrX 60343502 60343577 -102256353 + MER5A DNA MER1_type 7 84 -105 408 294 88 24 chrX 60343689 60343859 -102256071 - MIR3 SINE MIR -5 203 23 180 200 0 0 chrX 60344167 60344207 -102255723 + (TA)n Simple_repeat Simple_repeat 2 41 0 1957 274 28 6 chrX 60344965 60345458 -102254472 + L1MDa LINE L1 19 522 -6018 509 335 124 20 chrX 60345559 60345953 -102253977 - L2 LINE L2 -174 3139 2709 261 272 0 3 chrX 60345955 60346018 -102253912 - MIR SINE MIR -107 101 40 332 300 98 17 chrX 60346254 60346462 -102253468 + MIR SINE MIR 16 245 -17 677 343 30 0 chrX 60346804 60347040 -102252890 - MIR SINE MIR 0 262 20 445 303 56 11 chrX 60347082 60347260 -102252670 + MIR SINE MIR 77 262 0 231 267 13 40 chrX 60347923 60347998 -102251932 - MER5B DNA MER1_type -105 73 1 693 277 107 50 chrX 60348542 60349231 -102250699 + L1ME4a LINE L1 5297 6017 -104 2302 298 60 23 chrX 60349414 60349568 -102250362 + L1M3a LINE L1 1543 1690 -5876 246 32 0 0 chrX 60349568 60349599 -102250331 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4933 40 2 0 chrX 60349601 60350195 -102249735 - L1PA5 LINE L1 -6 6148 5554 2302 298 60 23 chrX 60350195 60352292 -102247638 + L1M3a LINE L1 1690 3403 -4163 852 232 62 33 chrX 60352461 60352982 -102246948 + L1M3a LINE L1 3319 3868 -3697 * 7342 225 35 39 chrX 60352981 60353614 -102246316 + L1M1 LINE L1 3161 3795 -3770 7000 67 1 0 chrX 60353614 60354706 -102245224 + L1PA7 LINE L1 5058 6151 -3 7342 225 35 39 chrX 60354706 60356592 -102243338 + L1M1 LINE L1 3795 5674 -1891 441 153 82 0 chrX 60356591 60356689 -102243241 - L1MCa LINE L1 -4120 2306 2201 * 467 164 0 0 chrX 60356689 60356756 -102243174 - Tigger7 DNA MER2_type 0 2587 2521 4252 132 37 5 chrX 60356806 60357542 -102242388 - Tigger3(Golem) DNA MER2_type -4 3025 2267 5960 211 6 18 chrX 60357646 60358947 -102240983 - L1P LINE L1 -1329 4817 3532 6071 218 24 4 chrX 60358950 60360451 -102239479 + L1PA13 LINE L1 2031 3574 -3223 2159 108 3 3 chrX 60360451 60360747 -102239183 - AluSp SINE Alu -17 296 1 315 0 0 0 chrX 60360775 60360810 -102239120 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3070 170 24 56 chrX 60360811 60362345 -102237585 - L1PB2 LINE L1 -5 6146 4575 399 190 25 0 chrX 60362340 60362419 -102237511 + L1PA13 LINE L1 3557 3637 -3160 * 29 0 0 0 chrX 60362420 60362449 -102237481 + AT_rich Low_complexity Low_complexity 1 29 0 563 55 0 0 chrX 60362449 60362522 -102237408 - L1PA4 LINE L1 -3 6152 6080 824 20 0 0 chrX 60362522 60362620 -102237310 + L1PA4 LINE L1 5999 6096 -59 2728 208 19 8 chrX 60362630 60362832 -102237098 + L1PA13 LINE L1 3646 3844 -2953 306 0 0 0 chrX 60362832 60362866 -102237064 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2728 208 19 8 chrX 60362866 60363299 -102236631 + L1PA13 LINE L1 3844 4288 -2509 2241 147 20 2 chrX 60363298 60363699 -102236231 + L1M1 LINE L1 2349 2756 -4809 * 288 186 0 0 chrX 60363699 60363758 -102236172 + (TA)n Simple_repeat Simple_repeat 2 60 0 243 253 0 11 chrX 60363758 60363849 -102236081 + L1MC4 LINE L1 6614 6703 -1339 223 71 48 0 chrX 60363852 60363894 -102236036 + (TA)n Simple_repeat Simple_repeat 2 45 0 4686 131 34 11 chrX 60363895 60364744 -102235186 + L1M1 LINE L1 2760 3628 -3937 320 132 0 4 chrX 60364744 60364797 -102235133 - MSTA LTR MaLR -313 51 1 973 154 6 12 chrX 60364800 60364969 -102234961 - L1P4 LINE L1 -519 5647 5480 671 231 45 0 chrX 60364973 60365146 -102234784 + L1P4 LINE L1 5293 5472 -702 24 0 0 0 chrX 60365146 60365170 -102234760 + AT_rich Low_complexity Low_complexity 1 24 0 3285 23 0 0 chrX 60365170 60365556 -102234374 - L1PA3 LINE L1 0 6155 5770 6678 14 0 1 chrX 60365560 60366326 -102233604 - L1HS LINE L1 0 6155 5391 2535 208 27 52 chrX 60366311 60366500 -102233430 + L1MB7 LINE L1 5495 5687 -497 * 687 139 88 0 chrX 60366500 60366637 -102233293 + L1MA7 LINE L1 6143 6291 0 2535 208 27 52 chrX 60366637 60367145 -102232785 + L1MB7 LINE L1 5687 6175 -9 326 251 211 6 chrX 60367145 60367316 -102232614 + L1ME4a LINE L1 5726 5931 -190 383 0 21 0 chrX 60367961 60368008 -102231922 + (TA)n Simple_repeat Simple_repeat 1 48 0 1173 137 20 106 chrX 60368013 60368081 -102231849 + L1M1 LINE L1 2433 2505 -5060 1930 92 0 15 chrX 60368081 60368343 -102231587 + AluSc SINE Alu 50 307 -2 1173 137 20 106 chrX 60368343 60368566 -102231364 + L1M1 LINE L1 2505 2699 -4866 * 4247 199 27 18 chrX 60368563 60369710 -102230220 - L1MA4A LINE L1 -159 6144 4992 * 18673 200 32 13 chrX 60369706 60374614 -102225316 - L1PA13 LINE L1 -3 7598 2392 2158 107 0 0 chrX 60374614 60374912 -102225018 - AluY SINE Alu -13 298 1 18673 200 32 13 chrX 60374912 60377351 -102222579 - L1PA13 LINE L1 -5209 2392 1 4991 156 36 7 chrX 60377390 60378352 -102221578 + L1MA1 LINE L1 2491 3480 -4085 7439 216 14 53 chrX 60378553 60379145 -102220785 + L1MA1 LINE L1 3460 4074 -3491 180 77 0 0 chrX 60379145 60379171 -102220759 + (CAA)n Simple_repeat Simple_repeat 1 26 0 7439 216 14 53 chrX 60379171 60379806 -102220124 + L1MA1 LINE L1 4074 4732 -2833 2013 145 7 0 chrX 60379806 60380102 -102219828 + AluSg SINE Alu 1 298 -12 7439 216 14 53 chrX 60380102 60381151 -102218779 + L1MA1 LINE L1 4732 5645 -1920 * 26324 47 3 1 chrX 60381147 60385252 -102214678 - L1PA4 LINE L1 -1 6154 2046 6120 184 13 15 chrX 60385243 60387335 -102212595 + L1MA1 LINE L1 5637 7721 0 * 13485 204 24 8 chrX 60387334 60391613 -102208317 + L1MA3 LINE L1 3379 7724 0 247 284 63 11 chrX 60391777 60391872 -102208058 - MIR3 SINE MIR -3 205 106 277 263 50 0 chrX 60392116 60392196 -102207734 + L2 LINE L2 3222 3305 -8 349 313 99 25 chrX 60392294 60392537 -102207393 - L1ME4a LINE L1 -63 6058 5798 6616 26 0 0 chrX 60393296 60394067 -102205863 - L1PA3 LINE L1 -5 6150 5380 4303 30 0 0 chrX 60394063 60394590 -102205340 + L1PA3 LINE L1 4869 5395 -751 * 323 237 0 0 chrX 60394622 60394681 -102205249 + MER20 DNA MER1_type 1 59 -160 2718 139 67 0 chrX 60394700 60395211 -102204719 - L1MA2 LINE L1 0 6304 5760 11288 135 16 28 chrX 60395311 60398219 -102201711 - L1P3 LINE L1 -3528 2933 1 412 229 0 0 chrX 60398224 60398320 -102201610 - L1 LINE L1 -3650 2496 2401 12359 195 38 25 chrX 60398432 60401396 -102198534 + L1MA4A LINE L1 2303 5320 -983 185 32 0 65 chrX 60401396 60401427 -102198503 + (CAT)n Simple_repeat Simple_repeat 3 31 0 12359 195 38 25 chrX 60401427 60402417 -102197513 + L1MA4A LINE L1 5320 6296 -7 259 269 26 26 chrX 60402418 60402496 -102197434 - MIR SINE MIR -2 260 183 944 90 0 0 chrX 60402516 60402649 -102197281 + L1P3 LINE L1 5658 5790 -364 3600 184 5 37 chrX 60402749 60403620 -102196310 - L1M1 LINE L1 -646 5656 4837 1728 124 101 0 chrX 60403620 60403878 -102196052 - AluSx SINE Alu -28 284 1 3600 184 5 37 chrX 60403878 60404205 -102195725 - L1M1 LINE L1 -1465 4837 4501 15127 97 8 59 chrX 60404211 60407490 -102192440 - L1PA7 LINE L1 -186 5968 2868 36195 76 3 3 chrX 60407590 60408356 -102191574 - L1P2 LINE L1 -477 5677 4913 2197 120 0 0 chrX 60408356 60408664 -102191266 - AluY SINE Alu -3 308 1 36195 76 3 3 chrX 60408664 60413575 -102186355 - L1P2 LINE L1 -1241 4913 2 280 281 0 62 chrX 60413595 60413691 -102186239 + L2 LINE L2 3182 3271 -1 267 351 99 8 chrX 60413997 60414128 -102185802 + MER5A DNA MER1_type 1 143 -46 306 164 35 0 chrX 60414285 60414354 -102185576 - L1MDb LINE L1 -5108 962 890 206 314 49 10 chrX 60414463 60414565 -102185365 + MIR SINE MIR 101 206 -56 3843 219 69 10 chrX 60414687 60416207 -102183723 - L1MB7 LINE L1 -1 6183 4565 428 225 9 0 chrX 60416247 60416358 -102183572 - L1MB7 LINE L1 -1712 4434 4323 2863 143 8 0 chrX 60416372 60416855 -102183075 - L1MA1 LINE L1 0 7721 7235 18771 188 24 23 chrX 60416857 60417545 -102182385 - L1MA1 LINE L1 -565 7158 6472 348 24 0 0 chrX 60417545 60417586 -102182344 + (TAG)n Simple_repeat Simple_repeat 3 43 0 18771 188 24 23 chrX 60417586 60420578 -102179352 - L1MA1 LINE L1 -1251 6472 3483 201 39 0 0 chrX 60420578 60420604 -102179326 + (TG)n Simple_repeat Simple_repeat 1 26 0 18771 188 24 23 chrX 60420604 60424056 -102175874 - L1MA1 LINE L1 -4240 3483 18 1546 204 4 7 chrX 60424765 60425103 -102174827 - AluJb SINE Alu 0 341 5 352 276 98 0 chrX 60425122 60425245 -102174685 - MIR SINE MIR -75 187 53 2407 174 14 5 chrX 60425711 60426135 -102173795 - MSTA LTR MaLR 0 428 1 410 319 56 0 chrX 60426521 60426665 -102173265 - L2 LINE L2 0 3313 3162 1931 195 72 23 chrX 60427051 60427481 -102172449 + LTR1B LTR ERV1 375 825 -1 267 297 36 43 chrX 60427511 60427649 -102172281 - MIR SINE MIR -16 246 110 325 286 92 0 chrX 60427736 60427855 -102172075 + L3b LINE CR1 1317 1446 -137 550 367 103 14 chrX 60428232 60428744 -102171186 + L3 LINE CR1 949 1506 -71 787 191 81 10 chrX 60428745 60428954 -102170976 + L1M1 LINE L1 5141 5364 -782 * 4961 44 0 0 chrX 60428953 60429562 -102170368 - L1PA5 LINE L1 -1559 4587 3979 7261 47 1 0 chrX 60429562 60431126 -102168804 + L1PA5 LINE L1 4577 6143 -11 561 30 0 0 chrX 60431126 60431193 -102168737 + (TA)n Simple_repeat Simple_repeat 1 67 0 1186 152 49 0 chrX 60431213 60431437 -102168493 + L1M1 LINE L1 5369 5603 -699 1105 208 9 4 chrX 60431439 60431670 -102168260 + L1P3 LINE L1 4 235 -5640 329 193 0 0 chrX 60431671 60431728 -102168202 + L1P3 LINE L1 858 914 -4961 18039 159 22 36 chrX 60431737 60434202 -102165728 + L1P3 LINE L1 1254 3656 -2805 261 0 0 0 chrX 60434202 60434231 -102165699 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 18039 159 22 36 chrX 60434231 60435327 -102164603 + L1P3 LINE L1 3656 4766 -1695 465 117 104 0 chrX 60435335 60435412 -102164518 + MLT2A2 LTR ERVL 124 208 -245 203 200 0 0 chrX 60435433 60435468 -102164462 + (TA)n Simple_repeat Simple_repeat 2 36 0 243 289 0 0 chrX 60435468 60435558 -102164372 - L1MC4 LINE L1 -1339 6703 6614 284 77 77 19 chrX 60435573 60435625 -102164305 + MLT2A2 LTR ERVL 399 453 0 408 133 0 0 chrX 60435626 60435686 -102164244 + L1PA8A LINE L1 4529 4588 -1558 5210 106 2 15 chrX 60435704 60436533 -102163397 + L1PA8A LINE L1 4566 5375 -756 2104 139 0 0 chrX 60436533 60436835 -102163095 + AluSx SINE Alu 1 302 -10 5210 106 2 15 chrX 60436835 60437293 -102162637 + L1PA8A LINE L1 5375 5837 -294 285 243 27 68 chrX 60437342 60437416 -102162514 - MER2 DNA MER2_type -1 344 274 2020 149 6 0 chrX 60437417 60437746 -102162184 + L1PA8 LINE L1 5842 6172 0 4098 112 55 18 chrX 60437757 60438436 -102161494 + L1MA1 LINE L1 5592 6295 -7 1075 245 83 28 chrX 60438529 60438855 -102161075 + MER2 DNA MER2_type 2 345 0 4047 32 1 0 chrX 60439191 60439905 -102160025 - L1PA3 LINE L1 -413 5742 5028 3337 35 0 0 chrX 60439905 60440340 -102159590 + L1PA3 LINE L1 5743 6177 0 239 227 113 0 chrX 60440390 60440487 -102159443 - L1ME3A LINE L1 -5 6165 6058 617 242 42 81 chrX 60440503 60440763 -102159167 - L1ME3A LINE L1 -200 5970 5721 1306 150 65 39 chrX 60440765 60441025 -102158905 + MER68 LTR ERV1 3 269 -293 198 0 0 0 chrX 60442538 60442560 -102157370 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 256 353 110 15 chrX 60442850 60442986 -102156944 + MIR SINE MIR 3 151 -111 1612 285 22 0 chrX 60442988 60443528 -102156402 + L1MB3 LINE L1 4398 4949 -1197 9284 45 2 0 chrX 60443538 60444686 -102155244 - L1PA4 LINE L1 -1055 5091 3942 7553 28 2 1 chrX 60444687 60445746 -102154184 + L1PA4 LINE L1 5094 6153 -2 1942 181 31 34 chrX 60445747 60446473 -102153457 + L1MB3 LINE L1 4945 5667 -516 2775 173 23 30 chrX 60446511 60447085 -102152845 - L1PB4 LINE L1 -8 6148 5579 2582 168 16 4 chrX 60447085 60447571 -102152359 + L1MB3 LINE L1 5676 6181 -2 285 135 0 0 chrX 60447572 60447624 -102152306 + L1MB3 LINE L1 6132 6183 0 271 350 0 0 chrX 60448023 60448083 -102151847 + MER91A DNA MER1_type 1 60 -136 396 297 147 6 chrX 60449424 60449584 -102150346 + MIR3 SINE MIR 9 187 -21 273 172 0 0 chrX 60450679 60450743 -102149187 + CT-rich Low_complexity Low_complexity 2 65 0 312 48 0 0 chrX 60450743 60450785 -102149145 + (CA)n Simple_repeat Simple_repeat 1 42 0 1228 330 80 12 chrX 60451037 60451115 -102148815 - L2 LINE L2 -6 3307 3236 574 259 97 40 chrX 60451115 60451362 -102148568 - MIR SINE MIR 0 262 2 1228 330 80 12 chrX 60451362 60452065 -102147865 - L2 LINE L2 -77 3236 2463 272 27 27 0 chrX 60452110 60452147 -102147783 + (TC)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 60452213 60452241 -102147689 + AT_rich Low_complexity Low_complexity 1 28 0 286 383 25 0 chrX 60452254 60452374 -102147556 - L2 LINE L2 -1 3271 3149 426 20 0 0 chrX 60452443 60452494 -102147436 + (CA)n Simple_repeat Simple_repeat 2 52 0 448 229 99 75 chrX 60452645 60452846 -102147084 + MIR SINE MIR 6 211 -51 218 254 0 68 chrX 60453283 60453342 -102146588 - L3 LINE CR1 -2 1575 1521 1216 234 93 26 chrX 60453375 60453618 -102146312 - Charlie4a DNA MER1_type -1514 447 222 2170 152 86 5 chrX 60453618 60454014 -102145916 - MSTA LTR MaLR 0 428 1 8486 163 7 50 chrX 60454014 60455663 -102144267 - MSTA-int LTR MaLR 0 1580 4 2070 145 132 5 chrX 60455666 60456046 -102143884 - MSTA LTR MaLR 0 428 1 1216 234 93 26 chrX 60456046 60456216 -102143714 - Charlie4a DNA MER1_type -1740 221 1 296 332 116 58 chrX 60456263 60456763 -102143167 - L3 LINE CR1 -109 1468 940 404 129 0 0 chrX 60457100 60457162 -102142768 - MSTA LTR MaLR 0 428 367 869 305 28 4 chrX 60457321 60457570 -102142360 - MIR SINE MIR 0 262 8 417 346 8 0 chrX 60457632 60457762 -102142168 - MER5A DNA MER1_type -29 160 30 535 226 39 96 chrX 60458207 60458415 -102141515 - MIR SINE MIR -12 250 55 303 227 32 149 chrX 60458443 60458506 -102141424 + L1MEc LINE L1 1313 1349 -5047 11442 38 25 0 chrX 60458506 60460650 -102139280 + L1PA3 LINE L1 3991 6155 0 303 227 32 149 chrX 60460650 60460740 -102139190 + L1MEc LINE L1 1349 1448 -4948 447 313 116 17 chrX 60460979 60461160 -102138770 - MIR3 SINE MIR -58 150 4 1624 249 47 29 chrX 60461570 60462056 -102137874 - MLT1D LTR MaLR -10 495 1 211 373 0 0 chrX 60462058 60462117 -102137813 - L2 LINE L2 -99 3173 3115 357 332 208 16 chrX 60462286 60462666 -102137264 - L2 LINE L2 -544 2770 2318 217 307 128 21 chrX 60462974 60463142 -102136788 - MIR SINE MIR -41 221 36 475 278 12 37 chrX 60463145 60463307 -102136623 + MIR SINE MIR 104 261 -1 841 242 71 9 chrX 60463371 60463453 -102136477 + MER58A DNA MER1_type 1 77 -2343 192 40 0 0 chrX 60463453 60463478 -102136452 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 841 242 71 9 chrX 60463478 60463606 -102136324 + MER58A DNA MER1_type 77 224 0 306 50 0 0 chrX 60463661 60463701 -102136229 + (CA)n Simple_repeat Simple_repeat 1 40 0 1641 202 34 70 chrX 60465773 60466244 -102133686 + MLT1C LTR MaLR 8 461 -6 1918 150 4 0 chrX 60466923 60467245 -102132685 + AluSg SINE Alu 1 323 0 11316 179 31 8 chrX 60467559 60469826 -102130104 - L1PBa LINE L1 -4544 2319 1 5855 197 23 31 chrX 60469826 60471038 -102128892 - L1 LINE L1 -2347 5218 3998 1545 215 3 3 chrX 60471038 60471326 -102128604 - AluSx SINE Alu -24 288 1 5855 197 23 31 chrX 60471326 60472998 -102126932 - L1 LINE L1 -3567 3998 2359 1882 176 36 36 chrX 60473002 60473366 -102126564 - THE1B LTR MaLR 0 364 1 8533 109 129 0 chrX 60473366 60474766 -102125164 - THE1B-int LTR MaLR 0 1580 1 1330 204 46 11 chrX 60474766 60475050 -102124880 - THE1B LTR MaLR 0 364 71 5000 241 24 10 chrX 60475064 60476086 -102123844 - L1 LINE L1 -6283 1282 237 198 0 0 0 chrX 60476086 60476108 -102123822 + (CTG)n Simple_repeat Simple_repeat 3 24 0 5000 241 24 10 chrX 60476108 60476336 -102123594 - L1 LINE L1 -7328 237 14 * 29235 38 3 0 chrX 60476335 60480605 -102119325 - L1PA4 LINE L1 -244 5911 1634 4514 219 1 7 chrX 60480705 60481799 -102118131 - L1 LINE L1 -2848 3298 2212 17668 201 16 7 chrX 60481802 60486836 -102113094 - L1PA12 LINE L1 -104 7502 2428 5907 240 16 3 chrX 60486855 60488148 -102111782 - L1PA12 LINE L1 -6271 1310 1 5282 231 25 8 chrX 60488154 60489675 -102110255 + L1 LINE L1 2439 3984 -2162 39706 58 3 1 chrX 60489680 60495827 -102104103 + L1PA2 LINE L1 7 6155 0 1815 224 46 35 chrX 60495823 60496536 -102103394 + L1M1 LINE L1 2871 3591 -3974 * 565 259 24 30 chrX 60496637 60496803 -102103127 - MLT1J LTR MaLR -316 195 31 9414 53 1 0 chrX 60497204 60498456 -102101474 - L1PA4 LINE L1 -1695 4451 3199 7309 52 0 2 chrX 60498456 60500149 -102099781 + L1PA4 LINE L1 4461 6152 -3 22 35 0 0 chrX 60500153 60500182 -102099748 + AT_rich Low_complexity Low_complexity 1 29 0 599 265 70 16 chrX 60500335 60500520 -102099410 - MIR SINE MIR -14 248 54 273 277 170 0 chrX 60501598 60501710 -102098220 + MIR3 SINE MIR 67 197 -11 414 265 188 24 chrX 60501737 60502118 -102097812 + LTR33 LTR ERVL 6 517 -4 471 246 95 30 chrX 60503317 60503496 -102096434 - MIR SINE MIR -21 241 12 537 333 40 10 chrX 60503741 60503942 -102095988 - MIR SINE MIR -50 212 6 445 330 108 24 chrX 60505085 60505455 -102094475 - L2 LINE L2 -2412 902 502 760 266 57 40 chrX 60506547 60506795 -102093135 - MIR SINE MIR -3 259 8 450 257 0 0 chrX 60506898 60506999 -102092931 + MIR SINE MIR 52 152 -110 200 317 12 24 chrX 60507179 60507261 -102092669 - L2 LINE L2 -468 2846 2766 190 269 0 60 chrX 60507343 60507410 -102092520 - L2 LINE L2 -17 3255 3193 1987 249 36 9 chrX 60507486 60508064 -102091866 + L1ME1 LINE L1 5542 6135 -31 236 355 113 0 chrX 60508370 60508494 -102091436 + L3 LINE CR1 590 727 -850 395 89 0 0 chrX 60508684 60508740 -102091190 + tRNA-Pro-CCT tRNA tRNA 1 56 -19 394 291 106 0 chrX 60508898 60509049 -102090881 - MIR SINE MIR -1 261 95 350 314 35 47 chrX 60509431 60509603 -102090327 - MER5A DNA MER1_type -6 183 14 441 239 0 0 chrX 60510165 60510282 -102089648 + (TATG)n Simple_repeat Simple_repeat 2 118 0 225 140 20 0 chrX 60510284 60510334 -102089596 + LTR66 LTR ERVL 389 439 -171 287 247 0 49 chrX 60510342 60510423 -102089507 + MER112 DNA MER1_type 183 259 -1 297 280 13 0 chrX 60511822 60511897 -102088033 + L2 LINE L2 3238 3313 0 353 381 41 0 chrX 60512011 60512158 -102087772 + L2 LINE L2 3116 3268 -4 1000 230 157 0 chrX 60512299 60512560 -102087370 - L2 LINE L2 0 3313 3012 273 284 0 0 chrX 60513041 60513115 -102086815 + L2 LINE L2 3239 3312 -1 236 337 63 21 chrX 60513115 60513210 -102086720 + L2 LINE L2 3157 3255 -17 387 282 8 8 chrX 60513619 60513736 -102086194 - MIR3 SINE MIR -46 162 46 268 302 63 37 chrX 60513736 60513932 -102085998 + L1M3a LINE L1 207 724 -5231 * 1408 270 105 24 chrX 60513931 60514607 -102085323 + L1M3a LINE L1 2044 2664 -4901 3383 96 7 0 chrX 60514607 60515055 -102084875 + MLT2A2 LTR ERVL 3 453 0 1408 270 105 24 chrX 60515055 60515770 -102084160 + L1M3a LINE L1 2664 3620 -3945 12606 189 36 1 chrX 60515786 60518198 -102081732 + L1M1 LINE L1 19 2516 -5049 3397 110 14 35 chrX 60518244 60518628 -102081302 - L1PA13 LINE L1 -7 6156 5786 1965 148 7 0 chrX 60518628 60518919 -102081011 - AluSx SINE Alu -19 293 1 3397 110 14 35 chrX 60518919 60519105 -102080825 - L1PA13 LINE L1 -377 5786 5598 711 268 5 24 chrX 60519105 60519310 -102080620 + L1M3a LINE L1 195 395 -7170 364 255 0 0 chrX 60519321 60519419 -102080511 - L1 LINE L1 -3028 3118 3021 2463 145 19 25 chrX 60519453 60519923 -102080007 + L1MA2 LINE L1 5838 6304 0 7316 225 16 17 chrX 60519941 60521447 -102078483 + L1M3a LINE L1 3600 5105 -2460 1171 55 12 6 chrX 60521447 60521611 -102078319 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 7316 225 16 17 chrX 60521611 60522128 -102077802 + L1M3a LINE L1 5105 5621 -1944 1957 143 45 40 chrX 60522134 60522554 -102077376 + L1MA3 LINE L1 5884 6305 0 1787 256 86 34 chrX 60522580 60523484 -102076446 + L1MA9 LINE L1 3653 4603 -2962 40023 61 3 1 chrX 60523499 60529639 -102070291 - L1PA4 LINE L1 0 6155 1 2649 255 35 3 chrX 60529659 60530511 -102069419 + L1MA9 LINE L1 4640 5518 -2047 5169 111 11 1 chrX 60530540 60530675 -102069255 + L1PA13 LINE L1 5351 5483 -680 2137 120 3 13 chrX 60530675 60530984 -102068946 + AluSg SINE Alu 1 306 -4 5169 111 11 1 chrX 60530984 60531649 -102068281 + L1PA13 LINE L1 5483 6159 -4 5045 186 27 44 chrX 60531651 60533372 -102066558 + L1MA9 LINE L1 5508 7204 -527 216 67 0 0 chrX 60533372 60533402 -102066528 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 5045 186 27 44 chrX 60533402 60533922 -102066008 + L1MA9 LINE L1 7204 7731 0 275 238 175 48 chrX 60534131 60534257 -102065673 - L2 LINE L2 -5 3308 3167 365 342 25 66 chrX 60534285 60534481 -102065449 - L2 LINE L2 -342 2972 2785 205 263 40 81 chrX 60535869 60535968 -102063962 - MIR SINE MIR -76 132 38 324 365 63 16 chrX 60536411 60536537 -102063393 + L2 LINE L2 3137 3268 -4 551 299 58 55 chrX 60536721 60536839 -102063091 + L3 LINE CR1 1029 1145 -432 1209 208 28 81 chrX 60536839 60537234 -102062696 - MLT1A2 LTR MaLR 0 374 1 551 299 58 55 chrX 60537234 60537443 -102062487 + L3 LINE CR1 1145 1357 -220 423 355 17 6 chrX 60538148 60538320 -102061610 + MER5B DNA MER1_type 3 176 -2 4067 154 25 6 chrX 60538490 60539273 -102060657 - L1MA8 LINE L1 -5 7705 6908 1742 210 58 24 chrX 60539279 60539317 -102060613 - L1MA8 LINE L1 -1847 5718 5683 361 0 41 0 chrX 60539317 60539366 -102060564 + (TG)n Simple_repeat Simple_repeat 1 51 0 1742 210 58 24 chrX 60539366 60539793 -102060137 - L1MA8 LINE L1 -1882 5683 5237 * 3206 241 35 2 chrX 60539784 60540757 -102059173 - L1MA8 LINE L1 -2928 4637 3631 5671 123 55 3 chrX 60540776 60542161 -102057769 - L1PA14 LINE L1 -5 7594 6180 8751 208 14 27 chrX 60542167 60544408 -102055522 - L1PA14 LINE L1 -1497 6087 3877 11474 193 16 4 chrX 60544415 60547255 -102052675 - L1PA14 LINE L1 -4970 2611 1 3614 272 38 29 chrX 60547255 60549026 -102050904 - L1MA8 LINE L1 -3929 3636 2097 11512 115 13 1 chrX 60549272 60550976 -102048954 + HERVL-A2 LTR ERVL 1396 3119 -2535 8243 125 33 0 chrX 60550974 60552268 -102047662 + HERVL-A2 LTR ERVL 4318 5654 0 * 1693 211 30 29 chrX 60552268 60552827 -102047103 + MLT2A2 LTR ERVL 1 554 0 4526 282 42 33 chrX 60552832 60552894 -102047036 - L1M3c LINE L1 -4702 2335 2275 1512 200 16 26 chrX 60552894 60553199 -102046731 - AluJb SINE Alu -10 302 1 4526 282 42 33 chrX 60553199 60555084 -102044846 - L1M3c LINE L1 -4762 2275 355 4315 138 4 16 chrX 60555136 60555831 -102044099 + THE1C-int LTR MaLR 894 1580 0 1425 152 34 128 chrX 60555834 60556241 -102043689 + THE1C LTR MaLR 4 372 -3 1131 248 112 9 chrX 60556254 60556577 -102043353 - L1M3c LINE L1 -6668 362 7 332 280 32 24 chrX 60557267 60557392 -102042538 + L1ME3A LINE L1 5813 5938 -232 1114 282 32 72 chrX 60557514 60558011 -102041919 + L1MB8 LINE L1 12 488 -6371 1810 203 59 2 chrX 60558011 60558249 -102041681 - MSTB1 LTR MaLR 0 432 160 2540 57 0 0 chrX 60558249 60558564 -102041366 + L1PA5 LINE L1 5837 6151 -3 1810 203 59 2 chrX 60558564 60558734 -102041196 - MSTB1 LTR MaLR -272 160 1 588 291 56 44 chrX 60558863 60559272 -102040658 + L1MB8 LINE L1 1266 1679 -5180 * 2951 251 32 16 chrX 60559258 60560234 -102039696 + L1MB8 LINE L1 4551 5541 -1416 * 9353 141 65 43 chrX 60560227 60561943 -102037987 + L1PA7 LINE L1 15 1758 -4700 8095 95 1 1 chrX 60561943 60563878 -102036052 + L1PA7 LINE L1 4537 6469 0 3543 231 40 7 chrX 60563881 60565314 -102034616 + L1MB8 LINE L1 5510 6987 -2 * 456 248 57 13 chrX 60565322 60565479 -102034451 + L1M4 LINE L1 1612 1775 -5080 * 1623 292 66 6 chrX 60565476 60566309 -102033621 + L1M4 LINE L1 3794 4676 -2281 1999 166 39 30 chrX 60566309 60566670 -102033260 + THE1B LTR MaLR 1 364 0 10078 116 13 68 chrX 60566670 60568341 -102031589 + THE1B-int LTR MaLR 1 1580 0 687 137 0 0 chrX 60568343 60568445 -102031485 + THE1B LTR MaLR 3 104 -260 232 256 101 0 chrX 60568445 60568574 -102031356 + L1M4 LINE L1 5160 5301 -1656 37 23 0 0 chrX 60568649 60568693 -102031237 + AT_rich Low_complexity Low_complexity 1 44 0 874 258 69 10 chrX 60568693 60569286 -102030644 + L1M4 LINE L1 5820 6478 -511 17040 194 56 14 chrX 60569292 60572040 -102027890 + L1 LINE L1 20 2651 -4914 1860 149 49 35 chrX 60572040 60572410 -102027520 + THE1C LTR MaLR 1 375 0 8764 158 25 35 chrX 60572410 60574006 -102025924 + THE1C-int LTR MaLR 1 1580 0 1871 159 46 35 chrX 60574006 60574377 -102025553 + THE1C LTR MaLR 1 375 0 17040 194 56 14 chrX 60574377 60575134 -102024796 + L1 LINE L1 2650 3675 -3890 4288 53 0 0 chrX 60575139 60575668 -102024262 - L1PA4 LINE L1 -226 5929 5401 1775 41 0 0 chrX 60575668 60575876 -102024054 + L1PA4 LINE L1 5934 6152 -3 2183 240 30 26 chrX 60575960 60576736 -102023194 + L1 LINE L1 3673 4451 -3114 10076 105 6 7 chrX 60576771 60578914 -102021016 - L1PA7 LINE L1 0 6469 4195 14840 87 15 5 chrX 60578915 60581787 -102018143 + L1PA6 LINE L1 3261 6147 -7 13554 148 13 39 chrX 60581802 60582952 -102016978 - L1PA7 LINE L1 -3140 3321 2143 14435 37 2 1 chrX 60582952 60585484 -102014446 + L1PA3 LINE L1 3628 6162 0 13554 148 13 39 chrX 60585484 60587663 -102012267 - L1PA7 LINE L1 -4318 2143 5 5980 225 17 9 chrX 60587666 60588148 -102011782 + L1 LINE L1 4476 4953 -2612 1969 144 0 0 chrX 60588148 60588433 -102011497 - AluSc SINE Alu -24 285 1 5980 225 17 9 chrX 60588433 60589482 -102010448 + L1 LINE L1 4953 6019 -1546 * 13771 52 3 5 chrX 60589465 60591253 -102008677 + L1P LINE L1 892 2677 -3469 2690 85 0 0 chrX 60591250 60591615 -102008315 - L1P LINE L1 -1583 4563 4199 * 3799 213 29 28 chrX 60591639 60593378 -102006552 + L1M2 LINE L1 2773 4511 -3054 13594 202 30 19 chrX 60593380 60594242 -102005688 + L1M2 LINE L1 16 867 -6698 7392 35 0 0 chrX 60594242 60595735 -102004195 + L1PA4 LINE L1 4682 6174 0 13594 202 30 19 chrX 60595735 60597287 -102002643 + L1M2 LINE L1 867 2469 -5096 1842 153 3 34 chrX 60597287 60597570 -102002360 + AluSq SINE Alu 3 276 -37 285 75 0 0 chrX 60597570 60597610 -102002320 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1842 153 3 34 chrX 60597610 60597647 -102002283 + AluSq SINE Alu 276 313 0 13594 202 30 19 chrX 60597647 60598014 -102001916 + L1M2 LINE L1 2469 2830 -4735 400 113 62 0 chrX 60598014 60598094 -102001836 + L1MA1 LINE L1 6218 6302 0 * 4574 186 54 20 chrX 60598091 60599205 -102000725 + L1M2 LINE L1 4492 5643 -1922 3723 29 0 9 chrX 60599305 60599752 -102000178 - L1PA3 LINE L1 -180 5975 5533 1362 25 0 0 chrX 60599736 60599894 -102000036 + L1PA3 LINE L1 5391 5548 -607 * 189 250 0 0 chrX 60600357 60600417 -101999513 + (TA)n Simple_repeat Simple_repeat 1 60 0 341 234 48 32 chrX 60600443 60600567 -101999363 - L1MC4 LINE L1 -136 7906 7781 582 255 40 94 chrX 60600568 60600941 -101998989 - L1MC4 LINE L1 -770 7272 6920 * 11098 163 35 32 chrX 60600939 60603336 -101996594 + L1M1 LINE L1 1453 3860 -3705 513 100 30 30 chrX 60603358 60603458 -101996472 - L1PA13 LINE L1 -11 6152 6053 5532 189 9 23 chrX 60603481 60605728 -101994202 - L1PB1 LINE L1 -8 6143 3937 405 167 10 29 chrX 60605862 60605964 -101993966 + MSTB1 LTR MaLR 333 432 0 379 318 71 0 chrX 60605967 60606093 -101993837 + L2 LINE L2 1571 1705 -1609 219 203 34 0 chrX 60606107 60606166 -101993764 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1270 302 57 41 chrX 60606176 60606821 -101993109 + L2 LINE L2 2196 3150 -163 2803 175 26 17 chrX 60607229 60607812 -101992118 - L1 LINE L1 -1071 5075 4488 7968 192 6 16 chrX 60607828 60609651 -101990279 - L1P LINE L1 -2703 3443 1667 239 214 0 0 chrX 60609754 60609810 -101990120 - L1M3 LINE L1 -488 5846 5791 11534 43 10 1 chrX 60609814 60612016 -101987914 - L1PA4 LINE L1 -3 6152 3936 17778 81 9 3 chrX 60612016 60614640 -101985290 + L1P3 LINE L1 2915 5547 -625 3207 24 0 3 chrX 60614740 60615123 -101984807 + L1P1 LINE L1 5275 5656 -499 6813 93 1 2 chrX 60615123 60616040 -101983890 - HERVL-A1 LTR ERVL -4738 916 1 2352 116 33 6 chrX 60616111 60616473 -101983457 - MLT2A1 LTR ERVL -72 372 1 416 235 0 0 chrX 60616478 60616580 -101983350 + L1MA3 LINE L1 2434 2535 -3611 5348 164 23 29 chrX 60616586 60617779 -101982151 + L1MA3 LINE L1 5105 6299 -6 1505 271 68 15 chrX 60617795 60618323 -101981607 + L1ME1 LINE L1 5594 6149 -17 476 327 106 13 chrX 60618406 60618632 -101981298 + MIR SINE MIR 5 251 -11 1660 334 83 19 chrX 60618702 60619720 -101980210 + L1M3a LINE L1 12 782 -5173 * 2125 298 60 26 chrX 60619697 60621477 -101978453 + L1M3a LINE L1 298 1804 -4230 234 54 27 27 chrX 60621487 60621524 -101978406 - MER73 LTR ERVL -3 641 605 2077 141 19 14 chrX 60621524 60621892 -101978038 - L1PB1 LINE L1 0 6867 6498 330 211 44 44 chrX 60621895 60621985 -101977945 - L1MC4 LINE L1 -1339 6703 6614 7575 206 19 13 chrX 60622028 60623396 -101976534 - L1PB1 LINE L1 -360 6507 5119 225 65 0 0 chrX 60623396 60623427 -101976503 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7575 206 19 13 chrX 60623427 60624423 -101975507 - L1PB1 LINE L1 -1748 5119 4130 6780 30 1 6 chrX 60624526 60625691 -101974239 - L1PA3 LINE L1 -91 6064 4908 3041 28 0 0 chrX 60625686 60626045 -101973885 + L1P LINE L1 4420 4778 -1368 * 3994 207 4 0 chrX 60626042 60626864 -101973066 - L1PB1 LINE L1 -3212 3650 2826 7126 173 30 4 chrX 60626866 60628273 -101971657 - L1PB1 LINE L1 -4081 2782 1339 1532 343 95 36 chrX 60628278 60628586 -101971344 - L1PB1 LINE L1 -5886 977 689 7178 55 0 1 chrX 60628586 60629963 -101969967 + L1PA5 LINE L1 4779 6151 -3 1532 343 95 36 chrX 60629963 60630572 -101969358 - L1PB1 LINE L1 -6174 689 6 2307 201 68 28 chrX 60630589 60631225 -101968705 - L1MDa LINE L1 -4552 1988 1328 504 326 108 38 chrX 60631374 60631937 -101967993 - L2 LINE L2 -180 3092 2472 189 307 51 80 chrX 60632026 60632163 -101967767 - MIR SINE MIR -50 212 80 1220 258 41 11 chrX 60632689 60633151 -101966779 + L1M4 LINE L1 3931 4406 -1740 3249 141 69 2 chrX 60633270 60633909 -101966021 + L1PBa LINE L1 1663 2344 -4519 28 0 0 0 chrX 60633909 60633937 -101965993 + AT_rich Low_complexity Low_complexity 1 28 0 1210 81 0 12 chrX 60633937 60634109 -101965821 - L1PA3 LINE L1 -3 6152 5983 29 35 0 35 chrX 60634209 60634234 -101965696 + AT_rich Low_complexity Low_complexity 1 25 -31 2173 59 0 0 chrX 60634234 60634504 -101965426 - L1PA8 LINE L1 -13 6159 5890 2197 133 0 3 chrX 60634504 60634842 -101965088 + L1PB1 LINE L1 5814 6150 -1 29 35 0 35 chrX 60634842 60634873 -101965057 + AT_rich Low_complexity Low_complexity 23 56 0 460 258 88 41 chrX 60635673 60635867 -101964063 - MIR SINE MIR -12 250 48 584 293 26 53 chrX 60636348 60636614 -101963316 - MIR SINE MIR -2 260 2 924 266 68 124 chrX 60636656 60637202 -101962728 + MLT1K LTR MaLR 4 518 -70 220 243 43 29 chrX 60637202 60637272 -101962658 - L2 LINE L2 -20 3293 3223 377 198 81 45 chrX 60637382 60637493 -101962437 + MIR SINE MIR 144 258 -4 1024 209 110 30 chrX 60637616 60638017 -101961913 + L1MC5 LINE L1 7495 7927 -34 389 325 62 84 chrX 60638308 60638761 -101961169 + L2 LINE L2 2034 2476 -838 25 31 0 0 chrX 60638853 60638885 -101961045 + AT_rich Low_complexity Low_complexity 1 32 0 184 313 0 30 chrX 60640115 60640182 -101959748 - MIR SINE MIR -12 250 186 1455 233 66 106 chrX 60640204 60640903 -101959027 - L1MC4 LINE L1 -5 8037 7367 25009 89 2 2 chrX 60640910 60644349 -101955581 + L1P LINE L1 9 3446 -2700 26491 39 4 2 chrX 60644449 60648541 -101951389 + L1PA3 LINE L1 2049 6152 -3 1311 250 95 47 chrX 60648569 60649085 -101950845 - MLT1E1 LTR MaLR 0 654 114 1893 141 18 12 chrX 60649124 60649464 -101950466 - L1MA8 LINE L1 -1 6290 5949 777 283 64 33 chrX 60649464 60649856 -101950074 - L1ME4a LINE L1 -49 6072 5669 846 210 5 5 chrX 60649858 60650044 -101949886 - L1MA10 LINE L1 -2 6332 6147 298 270 20 20 chrX 60650239 60650339 -101949591 - L1ME4a LINE L1 -460 5661 5562 23 54 0 0 chrX 60650879 60650916 -101949014 + AT_rich Low_complexity Low_complexity 1 37 0 244 260 240 0 chrX 60652033 60652129 -101947801 - MIR SINE MIR -25 237 119 466 243 44 22 chrX 60652438 60652574 -101947356 - MIR SINE MIR 0 262 124 911 295 26 8 chrX 60652600 60652834 -101947096 + L2 LINE L2 2837 3074 -239 7060 165 7 11 chrX 60652841 60654867 -101945063 + L1PA15 LINE L1 3922 5939 -226 730 284 78 12 chrX 60654916 60655159 -101944771 + MIR SINE MIR 1 259 -3 407 347 115 22 chrX 60655441 60655902 -101944028 + L2 LINE L2 1705 2208 -1106 640 256 74 11 chrX 60655904 60656080 -101943850 + MIR SINE MIR 5 191 -71 601 354 11 57 chrX 60656086 60656558 -101943372 + L2 LINE L2 2251 2700 -614 232 191 0 0 chrX 60656877 60656919 -101943011 + L2 LINE L2 3184 3225 -88 191 319 14 14 chrX 60657116 60657185 -101942745 + L3 LINE CR1 1509 1577 0 669 277 47 35 chrX 60657485 60657741 -101942189 + MIR SINE MIR 1 259 -3 291 277 98 18 chrX 60657799 60657911 -101942019 - MIR SINE MIR -79 183 63 204 213 0 0 chrX 60658616 60658677 -101941253 + CT-rich Low_complexity Low_complexity 2 62 0 234 105 0 0 chrX 60658677 60658715 -101941215 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 250 23 0 chrX 60658825 60658869 -101941061 - L2 LINE L2 -10 3262 3218 * 211 262 178 9 chrX 60658841 60658948 -101940982 - MIR SINE MIR -21 241 117 382 225 54 36 chrX 60659060 60659171 -101940759 - MIR SINE MIR -36 226 114 415 269 0 0 chrX 60659171 60659275 -101940655 + U6 snRNA snRNA 2 105 -2 484 222 39 33 chrX 60659278 60659458 -101940472 + L1ME3A LINE L1 5782 5962 -208 21 0 0 0 chrX 60659558 60659579 -101940351 + AT_rich Low_complexity Low_complexity 1 21 0 359 300 63 79 chrX 60659946 60660199 -101939731 + MIR SINE MIR 1 249 -13 648 317 28 14 chrX 60660871 60661096 -101938834 + MIR SINE MIR 30 256 -6 654 271 33 9 chrX 60661257 60661467 -101938463 + MER58C DNA MER1_type 1 215 0 368 294 72 33 chrX 60662107 60662287 -101937643 + MIR SINE MIR 70 256 -6 3489 249 69 28 chrX 60663322 60664523 -101935407 + L1ME3A LINE L1 3664 4813 -1357 1671 166 0 33 chrX 60664523 60664830 -101935100 - AluJo SINE Alu -15 297 1 3489 249 69 28 chrX 60664830 60665643 -101934287 + L1ME3A LINE L1 4813 5794 -376 1664 96 4 16 chrX 60665643 60665892 -101934038 + L1PA8A LINE L1 5886 6131 0 3489 249 69 28 chrX 60665892 60666274 -101933656 + L1ME3A LINE L1 5794 6159 -11 908 230 180 12 chrX 60666299 60666638 -101933292 - MLT1D LTR MaLR -8 497 102 1032 289 96 5 chrX 60667405 60667792 -101932138 + L2 LINE L2 2291 2712 -602 180 267 0 0 chrX 60667866 60667926 -101932004 + GA-rich Low_complexity Low_complexity 2 61 0 354 123 0 0 chrX 60668725 60668782 -101931148 + (CA)n Simple_repeat Simple_repeat 2 58 0 731 291 207 14 chrX 60669097 60669599 -101930331 + L2 LINE L2 2705 3312 -1 278 355 11 54 chrX 60669621 60669807 -101930123 - L3 LINE CR1 -9 1568 1391 1533 222 113 0 chrX 60669821 60670218 -101929712 + L1MDa LINE L1 41 482 -6058 12273 145 24 4 chrX 60670508 60672673 -101927257 + Tigger1 DNA MER2_type 209 2416 -2 644 203 49 12 chrX 60672676 60672866 -101927064 - L1P4 LINE L1 -497 5669 5473 786 85 184 0 chrX 60672883 60673024 -101926906 - L1MA2 LINE L1 -12 6292 6126 6144 151 14 8 chrX 60673035 60673712 -101926218 - L1MA1 LINE L1 -4 7717 7045 1628 118 201 25 chrX 60673712 60674076 -101925854 - MSTA LTR MaLR 0 428 1 6144 151 14 8 chrX 60674076 60675197 -101924733 - L1MA1 LINE L1 -676 7045 5907 4804 205 21 8 chrX 60675194 60676827 -101923103 - L1MA1 LINE L1 -2684 4881 3221 * 1167 232 48 40 chrX 60676820 60677195 -101922735 - L1MA1 LINE L1 -7174 391 14 * 10376 216 47 8 chrX 60677188 60677826 -101922104 - L1MA4A LINE L1 -156 6147 5536 2145 125 3 3 chrX 60677826 60678123 -101921807 - AluSq SINE Alu -15 298 2 10376 216 47 8 chrX 60678123 60681015 -101918915 - L1MA4A LINE L1 -767 5536 2473 3995 239 42 35 chrX 60681011 60682734 -101917196 - L1 LINE L1 -2465 4641 2902 * 578 159 0 23 chrX 60682745 60682877 -101917053 + MER2 DNA MER2_type 78 206 -139 902 198 44 18 chrX 60682981 60683254 -101916676 - L1 LINE L1 -4640 2397 2118 838 286 176 32 chrX 60683277 60684065 -101915865 - L1 LINE L1 -6063 967 66 1063 185 9 32 chrX 60684100 60684316 -101915614 - AluJo SINE Alu -15 297 87 338 197 0 26 chrX 60684317 60684393 -101915537 - L1 LINE L1 -6956 74 1 278 164 0 0 chrX 60684855 60684910 -101915020 + L1PB1 LINE L1 6089 6143 -8 228 133 44 0 chrX 60684921 60684966 -101914964 + A-rich Low_complexity Low_complexity 1 47 0 650 100 0 0 chrX 60685096 60685186 -101914744 + L1PA5 LINE L1 11 100 -6046 * 35281 57 3 1 chrX 60685182 60690703 -101909227 + L1PA5 LINE L1 623 6154 0 404 347 36 14 chrX 60690774 60691051 -101908879 - L2 LINE L2 -1450 1864 1582 752 240 0 96 chrX 60691368 60691597 -101908333 + MIR SINE MIR 56 262 0 237 321 73 9 chrX 60691752 60691861 -101908069 - L2 LINE L2 -15 3298 3183 240 298 62 86 chrX 60691926 60692218 -101907712 - L2 LINE L2 -1228 2086 1802 1424 275 39 54 chrX 60693399 60694082 -101905848 - L2 LINE L2 -251 3062 2393 282 258 40 65 chrX 60694013 60694137 -101905793 + MIR SINE MIR 142 262 0 * 249 231 279 19 chrX 60694280 60694384 -101905546 + MIR SINE MIR 122 252 -10 481 273 162 0 chrX 60694413 60694567 -101905363 + MER5A DNA MER1_type 9 187 -2 256 315 0 34 chrX 60694578 60694667 -101905263 - MIR3 SINE MIR -39 169 84 876 191 0 106 chrX 60694892 60695128 -101904802 - MIR SINE MIR -11 251 41 302 253 66 22 chrX 60695658 60695749 -101904181 - MIR3 SINE MIR -5 203 109 245 179 19 75 chrX 60696354 60696460 -101903470 + G-rich Low_complexity Low_complexity 2 101 0 898 235 12 61 chrX 60697577 60697824 -101902106 + MIR SINE MIR 28 262 0 241 297 11 55 chrX 60698417 60698508 -101901422 + MIR SINE MIR 20 106 -156 252 0 0 0 chrX 60698563 60698591 -101901339 + (TG)n Simple_repeat Simple_repeat 2 29 0 465 277 23 0 chrX 60698691 60698821 -101901109 + MIR SINE MIR 101 233 -29 843 311 63 18 chrX 60698855 60699186 -101900744 - L3 LINE CR1 -71 1506 1161 181 326 34 11 chrX 60699184 60699273 -101900657 - L2 LINE L2 -845 2469 2379 * 29 0 0 0 chrX 60699299 60699328 -101900602 + AT_rich Low_complexity Low_complexity 1 29 0 1701 172 7 7 chrX 60699330 60699621 -101900309 + AluJo SINE Alu 1 291 -21 246 324 55 32 chrX 60699650 60699838 -101900092 - MIR SINE MIR -44 218 30 257 329 59 71 chrX 60700242 60700412 -101899518 + L2 LINE L2 3099 3266 -6 475 337 43 16 chrX 60700787 60700974 -101898956 + MIR3 SINE MIR 16 207 -1 302 194 28 14 chrX 60701031 60701103 -101898827 + L3 LINE CR1 1401 1473 -104 22 0 0 0 chrX 60702260 60702282 -101897648 + AT_rich Low_complexity Low_complexity 1 22 0 289 225 22 0 chrX 60703004 60703093 -101896837 + CT-rich Low_complexity Low_complexity 3 93 0 1988 133 34 0 chrX 60703095 60703389 -101896541 - AluSx SINE Alu -8 304 1 307 284 105 0 chrX 60703444 60703539 -101896391 - MER5B DNA MER1_type -68 110 6 21 36 0 0 chrX 60704143 60704171 -101895759 + AT_rich Low_complexity Low_complexity 1 28 0 12869 194 56 36 chrX 60704171 60708672 -101891258 - L1PB1 LINE L1 -9 6858 2098 510 152 0 0 chrX 60708672 60708764 -101891166 + C-rich Low_complexity Low_complexity 2 93 0 12869 194 56 36 chrX 60708764 60710899 -101889031 - L1PB1 LINE L1 -4769 2098 6 1755 191 0 0 chrX 60711002 60711295 -101888635 - AluSx SINE Alu -19 293 1 1570 302 21 24 chrX 60711449 60711986 -101887944 - L2 LINE L2 -6 3307 2770 261 250 45 23 chrX 60712074 60712162 -101887768 - L2 LINE L2 -524 2790 2701 185 258 81 16 chrX 60712268 60712330 -101887600 - L2 LINE L2 -1884 1430 1365 630 239 80 0 chrX 60712342 60712505 -101887425 + MER5B DNA MER1_type 3 178 0 219 324 167 0 chrX 60712507 60712609 -101887321 - MIR3 SINE MIR -38 170 52 4066 179 36 43 chrX 60713619 60714276 -101885654 - L1MB7 LINE L1 -21 6163 5503 2144 77 0 0 chrX 60714276 60714536 -101885394 - AluSq SINE Alu -53 260 1 4066 179 36 43 chrX 60714536 60715231 -101884699 - L1MB7 LINE L1 -681 5503 4843 1488 249 36 11 chrX 60715233 60715683 -101884247 + L1ME3 LINE L1 5701 6161 -1 338 322 98 44 chrX 60716510 60716727 -101883203 - MIR SINE MIR -15 247 19 202 236 0 97 chrX 60716850 60716922 -101883008 - L2 LINE L2 -12 3301 3237 2034 107 33 0 chrX 60717344 60717616 -101882314 + AluSq SINE Alu 1 281 -32 473 180 0 10 chrX 60717616 60717716 -101882214 + GA-rich Low_complexity Low_complexity 3 101 0 276 330 60 39 chrX 60718611 60718793 -101881137 - MIR SINE MIR -66 196 11 314 255 20 69 chrX 60718970 60719072 -101880858 + MIR SINE MIR 116 212 -50 689 282 62 0 chrX 60719169 60719364 -101880566 + MIR SINE MIR 53 259 -3 453 336 205 11 chrX 60720272 60720776 -101879154 - L2 LINE L2 -1 3312 2713 617 251 143 68 chrX 60721101 60721556 -101878374 - MLT1L LTR MaLR -4 611 123 32 26 0 0 chrX 60722699 60722738 -101877192 + AT_rich Low_complexity Low_complexity 1 39 0 3948 217 85 30 chrX 60722761 60724718 -101875212 - L1MDb LINE L1 -3938 2468 399 248 244 64 13 chrX 60724738 60724816 -101875114 + MIR SINE MIR 112 193 -69 211 376 8 16 chrX 60724810 60724935 -101874995 + L2 LINE L2 3190 3313 0 * 195 100 0 0 chrX 60724953 60724983 -101874947 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 183 292 0 0 chrX 60725139 60725187 -101874743 - MIR SINE MIR -14 248 201 408 20 0 0 chrX 60725216 60725265 -101874665 + (TG)n Simple_repeat Simple_repeat 2 50 0 301 340 10 0 chrX 60725640 60725743 -101874187 - L1M4 LINE L1 -1161 4985 4882 419 341 89 6 chrX 60725771 60725950 -101873980 - MIR SINE MIR -66 196 3 389 238 126 0 chrX 60726250 60726401 -101873529 - MLT1J1 LTR MaLR -4 442 273 393 133 24 12 chrX 60726403 60726486 -101873444 - L1MB8 LINE L1 0 6178 6095 1061 208 43 0 chrX 60726505 60726760 -101873170 - L1MB4 LINE L1 -6 6174 5909 * 3211 218 68 24 chrX 60726757 60727861 -101872069 - L1M4c LINE L1 -4555 2091 939 258 105 0 0 chrX 60727874 60727912 -101872018 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1000 222 15 0 chrX 60727915 60728113 -101871817 - AluJb SINE Alu -27 285 85 514 316 82 55 chrX 60728120 60729044 -101870886 - L1M4c LINE L1 -5587 955 7 549 332 15 2 chrX 60729049 60729319 -101870611 - MLT1J2 LTR MaLR -171 275 1 258 259 126 67 chrX 60729414 60729549 -101870381 - MIR3 SINE MIR -14 194 52 541 236 20 79 chrX 60729577 60729695 -101870235 + MER112 DNA MER1_type 1 98 -162 918 281 75 18 chrX 60729695 60730079 -101869851 + MLT1I LTR MaLR 4 409 0 541 236 20 79 chrX 60730079 60730214 -101869716 + MER112 DNA MER1_type 98 239 -21 323 174 0 14 chrX 60731866 60731935 -101867995 - MLT1I LTR MaLR -19 390 323 425 232 65 14 chrX 60732002 60732140 -101867790 - MLT1I LTR MaLR -197 212 68 534 262 47 40 chrX 60733176 60733325 -101866605 + MIR3 SINE MIR 36 185 -23 607 237 29 0 chrX 60734551 60734690 -101865240 - Charlie8 DNA MER1_type -2148 269 127 1764 235 98 10 chrX 60734828 60735348 -101864582 - MLT1E2 LTR MaLR -1 625 60 427 237 23 49 chrX 60736405 60736595 -101863335 - MIR SINE MIR -37 225 45 603 345 56 16 chrX 60736891 60737195 -101862735 - L3 LINE CR1 -28 1549 1234 291 350 44 22 chrX 60737213 60737350 -101862580 - L3 LINE CR1 -468 1109 970 381 102 0 0 chrX 60737861 60737920 -101862010 + (CA)n Simple_repeat Simple_repeat 2 60 0 1090 78 0 128 chrX 60739021 60739161 -101860769 + HERVL-A1 LTR ERVL 5465 5569 -85 2495 80 0 0 chrX 60739161 60739472 -101860458 - AluSx SINE Alu -1 311 1 1090 78 0 128 chrX 60739472 60739549 -101860381 + HERVL-A1 LTR ERVL 5569 5654 0 2343 123 28 5 chrX 60739549 60739939 -101859991 + MLT2A1 LTR ERVL 1 399 -45 16122 196 32 10 chrX 60740034 60743488 -101856442 - L1M1 LINE L1 -4025 3540 10 1680 273 63 26 chrX 60743511 60744394 -101855536 - L1M4 LINE L1 -1888 4258 3343 29 47 0 0 chrX 60744663 60744706 -101855224 + AT_rich Low_complexity Low_complexity 1 43 0 2017 41 0 0 chrX 60744706 60744949 -101854981 - L1PA4 LINE L1 -3 6152 5910 4935 52 3 0 chrX 60744950 60745708 -101854222 + L1P2 LINE L1 4727 5487 -667 3034 252 43 26 chrX 60746339 60747520 -101852410 + L1 LINE L1 4150 5350 -796 386 249 98 35 chrX 60747573 60747890 -101852040 - L1MC5 LINE L1 -44 7917 7581 529 188 0 0 chrX 60747936 60748037 -101851893 - L1PB4 LINE L1 -27 6129 6029 * 625 118 6 1 chrX 60748021 60748131 -101851799 - L1PB4 LINE L1 -206 5959 5847 2813 3 0 0 chrX 60748139 60748442 -101851488 - AluY SINE Alu -8 303 1 8911 120 13 1 chrX 60748694 60750851 -101849079 - L1PA8 LINE L1 -8 6164 3978 653 164 17 60 chrX 60750851 60750881 -101849049 + L1P4 LINE L1 5338 5368 -798 1418 228 23 26 chrX 60750881 60751188 -101848742 + AluSx SINE Alu 1 306 -6 653 164 17 60 chrX 60751188 60751342 -101848588 + L1P4 LINE L1 5368 5514 -652 * 28361 119 11 70 chrX 60751330 60757617 -101842313 + L1PA7 LINE L1 12 5915 -239 777 84 0 0 chrX 60757618 60757737 -101842193 + (TA)n Simple_repeat Simple_repeat 2 120 0 7779 21 2 0 chrX 60757739 60759430 -101840500 - L1PA2 LINE L1 -7 6148 4456 6712 42 0 0 chrX 60759426 60760243 -101839687 + L1PA2 LINE L1 3623 4439 -1707 * 1636 106 12 12 chrX 60760219 60760475 -101839455 + L1PA7 LINE L1 5894 6149 -5 * 3484 194 16 12 chrX 60760475 60761149 -101838781 + L1PA16 LINE L1 5475 6164 -2 1927 204 49 4 chrX 60761164 60761630 -101838300 - L1MA9 LINE L1 -35 6277 5791 11534 43 10 1 chrX 60761634 60763836 -101836094 - L1PA4 LINE L1 -3 6152 3936 13694 51 3 2 chrX 60763836 60765602 -101834328 + L1P LINE L1 2915 4683 -1463 16395 203 47 21 chrX 60765612 60766966 -101832964 - L1 LINE L1 -2973 4592 3275 3614 103 0 4 chrX 60766966 60767479 -101832451 - MER9 LTR ERVK 0 511 1 16395 203 47 21 chrX 60767479 60767834 -101832096 - L1 LINE L1 -4290 3275 2931 1873 152 0 29 chrX 60767834 60768149 -101831781 - AluSx SINE Alu -5 307 2 16395 203 47 21 chrX 60768149 60770897 -101829033 - L1 LINE L1 -4634 2931 16 4045 239 20 14 chrX 60770896 60772255 -101827675 - L1PA15-16 LINE L1 -3492 4073 2696 * 276 143 0 110 chrX 60772262 60772317 -101827613 - L1MA5 LINE L1 0 6300 6246 5957 87 5 2 chrX 60772317 60773482 -101826448 - L1PA8 LINE L1 0 6172 4874 9683 139 6 7 chrX 60773484 60775110 -101824820 + L1P LINE L1 1959 3581 -2565 8994 206 54 11 chrX 60775103 60778132 -101821798 - L1 LINE L1 -1532 6033 2876 * 1515 129 35 25 chrX 60778132 60778418 -101821512 - L1PA15-16 LINE L1 -4927 2638 2350 1109 219 0 17 chrX 60778422 60778655 -101821275 + L1PA12 LINE L1 3 231 -7350 10615 201 73 63 chrX 60778661 60780201 -101819729 + L1P LINE L1 860 2382 -3764 3729 31 2 0 chrX 60780201 60780646 -101819284 + L1PA3 LINE L1 5710 6155 0 10615 201 73 63 chrX 60780646 60782137 -101817793 + L1P LINE L1 2382 3924 -2222 2673 152 8 6 chrX 60782156 60782624 -101817306 - L1PB1 LINE L1 -7 6144 5676 360 309 108 29 chrX 60782677 60782881 -101817049 - MIR SINE MIR -38 224 5 14625 103 16 8 chrX 60783134 60786137 -101813793 - L1PA7 LINE L1 -4 6150 3130 2329 123 6 0 chrX 60786137 60786496 -101813434 - L1PA7 LINE L1 -3402 2744 2384 11610 201 47 14 chrX 60786511 60790660 -101809270 - L1P5 LINE L1 -617 6250 1958 442 340 84 13 chrX 60790848 60791086 -101808844 + MIR SINE MIR 5 259 -3 309 26 0 0 chrX 60792065 60792103 -101807827 + (TG)n Simple_repeat Simple_repeat 1 38 0 2616 227 34 13 chrX 60792219 60792897 -101807033 - L1MB8 LINE L1 -1 6177 5486 192 138 0 0 chrX 60793302 60793331 -101806599 - MIR SINE MIR -139 69 41 180 77 0 0 chrX 60794351 60794377 -101805553 + (TTA)n Simple_repeat Simple_repeat 1 26 0 231 83 28 0 chrX 60794573 60794609 -101805321 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 353 133 63 0 chrX 60795394 60795552 -101804378 + (TA)n Simple_repeat Simple_repeat 1 168 0 3578 169 14 14 chrX 60795552 60796648 -101803282 - L1P5 LINE L1 -329 5822 4729 2918 201 16 0 chrX 60796647 60797278 -101802652 + L1P5 LINE L1 4096 4736 -1410 * 1612 275 128 71 chrX 60797667 60798839 -101801091 + L1M2b LINE L1 10 1248 -5961 5481 182 15 12 chrX 60798846 60800863 -101799067 + L1MA5 LINE L1 4268 6298 -2 236 253 320 0 chrX 60800869 60800944 -101798986 + MER5A DNA MER1_type 61 159 -30 443 205 140 18 chrX 60800954 60801125 -101798805 - LTR37B LTR ERV1 -210 258 67 345 217 96 70 chrX 60801480 60801637 -101798293 - MER117 DNA MER1_type -5 192 32 902 164 114 41 chrX 60803648 60803867 -101796063 + MER46A DNA MER2_type 1 235 -1 201 154 0 0 chrX 60804198 60804237 -101795693 + (CATA)n Simple_repeat Simple_repeat 3 41 0 26 0 0 0 chrX 60804264 60804290 -101795640 + AT_rich Low_complexity Low_complexity 1 26 0 266 282 23 38 chrX 60804396 60804527 -101795403 - L1MC/D LINE L1 -2019 5789 5661 459 184 18 53 chrX 60804603 60804717 -101795213 + L1PA16 LINE L1 6048 6157 -9 344 285 8 32 chrX 60804731 60804854 -101795076 - L1MC/D LINE L1 -578 5588 5469 31 44 0 0 chrX 60804862 60804907 -101795023 + AT_rich Low_complexity Low_complexity 1 45 0 1420 102 27 62 chrX 60804908 60805164 -101794766 - L1MA5A LINE L1 -21 6276 6030 460 211 29 0 chrX 60805168 60805272 -101794658 + L1P LINE L1 5058 5164 -982 * 2691 169 10 0 chrX 60805262 60805904 -101794026 - L1P4 LINE L1 -450 5716 5068 311 301 53 23 chrX 60805912 60806045 -101793885 - L1MC/D LINE L1 -1225 4921 4785 307 336 64 41 chrX 60806045 60806169 -101793761 - L1MC/D LINE L1 -2810 3336 3203 1381 209 87 27 chrX 60806169 60806537 -101793393 - MSTD LTR MaLR -3 393 4 307 336 64 41 chrX 60806537 60806632 -101793298 - L1MC/D LINE L1 -2943 3203 3112 216 97 0 0 chrX 60807242 60807273 -101792657 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 277 213 12 75 chrX 60807344 60807424 -101792506 + L2 LINE L2 3198 3272 0 386 359 58 60 chrX 60808189 60808554 -101791376 - L2 LINE L2 -26 3246 2883 446 343 50 6 chrX 60808611 60808792 -101791138 - L2 LINE L2 -562 2752 2564 258 324 152 19 chrX 60808842 60809052 -101790878 + L2 LINE L2 1720 1957 -1357 11650 30 3 0 chrX 60809057 60811219 -101788711 - L1PA2 LINE L1 -2 6153 3987 812 47 0 0 chrX 60811219 60811326 -101788604 + L1PA2 LINE L1 3885 3991 -2155 647 297 5 27 chrX 60811327 60811549 -101788381 + L2 LINE L2 1989 2205 -1109 295 196 0 54 chrX 60811573 60811665 -101788265 - HsTC2 DNA Tc2 -17 1881 1795 652 320 111 42 chrX 60811688 60812337 -101787593 + L2 LINE L2 2372 3068 -204 4264 187 37 9 chrX 60812414 60813316 -101786614 + L1MC2 LINE L1 5409 6335 -9 199 324 176 9 chrX 60813383 60813491 -101786439 + L2 LINE L2 3188 3313 0 * 449 317 150 18 chrX 60813476 60813810 -101786120 - L2 LINE L2 -789 2525 2148 27869 122 14 57 chrX 60813819 60820265 -101779665 + L1PA8 LINE L1 12 6171 -1 4368 131 16 13 chrX 60820260 60821022 -101778908 + L1PB4 LINE L1 5385 6148 -8 * 22 0 0 0 chrX 60821042 60821064 -101778866 + AT_rich Low_complexity Low_complexity 1 22 0 832 261 40 22 chrX 60821234 60821460 -101778470 + MIR SINE MIR 33 262 0 223 203 62 31 chrX 60821863 60821927 -101778003 - L2 LINE L2 -668 2646 2581 1668 104 43 4 chrX 60821993 60822224 -101777706 - AluSq SINE Alu -1 312 73 2270 67 11 0 chrX 60822224 60822506 -101777424 - AluY SINE Alu -12 299 13 240 301 27 0 chrX 60822507 60822580 -101777350 - L2 LINE L2 0 3313 3239 428 243 85 73 chrX 60822680 60822857 -101777073 - MIR3 SINE MIR -6 202 24 219 69 0 0 chrX 60823025 60823054 -101776876 + (A)n Simple_repeat Simple_repeat 1 29 0 3341 128 73 58 chrX 60823174 60823915 -101776015 - Tigger3(Golem) DNA MER2_type 0 3029 2278 2229 105 0 20 chrX 60823919 60824225 -101775705 + AluSq SINE Alu 1 300 -13 464 172 0 123 chrX 60824225 60824347 -101775583 - Tigger3(Golem) DNA MER2_type -2921 108 2 457 331 20 0 chrX 60825026 60825174 -101774756 + MIR SINE MIR 1 151 -111 525 96 64 0 chrX 60825181 60825275 -101774655 - L1P5 LINE L1 -672 5484 5385 * 5025 114 16 52 chrX 60825270 60826295 -101773635 - L1PA8 LINE L1 0 6172 5184 930 277 13 4 chrX 60826341 60826579 -101773351 - MIR SINE MIR -3 259 20 941 229 66 18 chrX 60826609 60826836 -101773094 + MIR SINE MIR 14 251 -11 221 309 48 12 chrX 60827254 60827338 -101772592 - MIR SINE MIR -130 132 46 245 299 0 15 chrX 60827776 60827843 -101772087 + L2 LINE L2 3199 3264 -8 385 294 62 28 chrX 60828413 60828589 -101771341 + MIR3 SINE MIR 4 191 -62 21 36 0 0 chrX 60828859 60828887 -101771043 + AT_rich Low_complexity Low_complexity 1 28 0 868 100 8 0 chrX 60829079 60829209 -101770721 + L1MA1 LINE L1 6172 6302 0 580 340 128 19 chrX 60829542 60829916 -101770014 - L2 LINE L2 -337 2977 2563 1561 236 69 53 chrX 60830141 60830633 -101769297 - L1MD1 LINE L1 -350 5892 5409 276 30 0 0 chrX 60830633 60830666 -101769264 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1669 173 18 21 chrX 60830670 60830953 -101768977 - AluJo SINE Alu -30 282 1 1561 236 69 53 chrX 60830953 60831022 -101768908 - L1MD1 LINE L1 -835 5407 5317 5009 246 57 15 chrX 60831033 60832238 -101767692 - L1MA5 LINE L1 0 6300 5146 1937 134 20 30 chrX 60832238 60832543 -101767387 + AluSx SINE Alu 4 305 -7 5009 246 57 15 chrX 60832543 60834442 -101765488 - L1MA5 LINE L1 -1154 5146 3059 17809 43 7 3 chrX 60834551 60836915 -101763015 + L1P LINE L1 2462 4834 -1312 381 191 143 0 chrX 60836924 60837008 -101762922 + MER21B LTR ERV1 221 316 -547 1359 87 0 0 chrX 60837008 60837193 -101762737 + L1PA5 LINE L1 5970 6154 0 288 212 61 30 chrX 60837194 60837326 -101762604 + L1 LINE L1 4361 4496 -1650 19883 54 1 1 chrX 60837439 60840105 -101759825 + L1P LINE L1 2560 5227 -919 762 205 5 10 chrX 60840117 60840312 -101759618 - L1 LINE L1 -769 5377 5184 930 277 13 4 chrX 60840358 60840596 -101759334 - MIR SINE MIR -3 259 20 941 229 66 18 chrX 60840626 60840853 -101759077 + MIR SINE MIR 14 251 -11 221 309 48 12 chrX 60841272 60841356 -101758574 - MIR SINE MIR -130 132 46 245 299 0 15 chrX 60841794 60841861 -101758069 + L2 LINE L2 3199 3264 -8 385 294 62 28 chrX 60842431 60842607 -101757323 + MIR3 SINE MIR 4 191 -62 21 36 0 0 chrX 60842877 60842905 -101757025 + AT_rich Low_complexity Low_complexity 1 28 0 868 100 8 0 chrX 60843097 60843227 -101756703 + L1MA1 LINE L1 6172 6302 0 580 340 128 19 chrX 60843560 60843934 -101755996 - L2 LINE L2 -337 2977 2563 1533 218 85 65 chrX 60844159 60844649 -101755281 - L1MD1 LINE L1 -350 5892 5413 276 30 0 0 chrX 60844649 60844682 -101755248 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1669 173 18 21 chrX 60844686 60844969 -101754961 - AluJo SINE Alu -30 282 1 1533 218 85 65 chrX 60844969 60845038 -101754892 - L1MD1 LINE L1 -831 5411 5317 5009 180 53 13 chrX 60845049 60846254 -101753676 - L1MA5 LINE L1 0 7016 5719 1928 135 20 30 chrX 60846254 60846558 -101753372 + AluSx SINE Alu 4 304 -8 5009 180 53 13 chrX 60846558 60846880 -101753050 - L1MA5 LINE L1 -1297 5719 5411 31739 94 6 3 chrX 60846999 60851504 -101748426 - HERVL LTR ERVL -233 5421 905 3580 55 4 4 chrX 60851535 60851991 -101747939 - L1PA4 LINE L1 -1 6154 5699 3253 28 0 0 chrX 60851991 60852598 -101747332 + L1P2 LINE L1 5050 5656 -499 3489 97 2 13 chrX 60852598 60853124 -101746806 - HERVL LTR ERVL -4738 916 397 4062 202 78 11 chrX 60853235 60856727 -101743203 - L1MA5 LINE L1 -2979 3883 9 3602 268 39 18 chrX 60856734 60857965 -101741965 - L1M2c LINE L1 -4523 2266 1010 523 198 9 0 chrX 60857980 60858086 -101741844 - MLT1B LTR MaLR -282 108 2 1980 144 32 35 chrX 60858096 60858472 -101741458 - THE1C LTR MaLR 0 375 1 1758 217 3 5 chrX 60858569 60858961 -101740969 - L1MB8 LINE L1 -19 6159 5769 2249 128 11 8 chrX 60858963 60859330 -101740600 - L1PB1 LINE L1 -2 6149 5782 226 204 0 0 chrX 60859334 60859378 -101740552 + L1MC4 LINE L1 6659 6702 -1340 6022 234 19 5 chrX 60859485 60859602 -101740328 - L1MB8 LINE L1 -1617 4529 4415 378 115 0 0 chrX 60859602 60859663 -101740267 + (TA)n Simple_repeat Simple_repeat 1 61 0 6022 234 19 5 chrX 60859663 60861134 -101738796 - L1MB8 LINE L1 -1731 4415 2919 958 204 0 0 chrX 60861135 60861307 -101738623 + AluSg/x SINE Alu 132 303 -7 2544 136 11 5 chrX 60861307 60861788 -101738142 + L1PB1 LINE L1 2355 2903 -3959 1872 44 4 0 chrX 60861789 60862016 -101737914 - L1PA4 LINE L1 -529 5626 5399 4236 51 0 2 chrX 60862016 60862543 -101737387 + L1PA4 LINE L1 5626 6152 -3 2077 202 5 2 chrX 60862543 60862983 -101736947 + L1PB1 LINE L1 2896 3336 -3526 * 6418 206 108 4 chrX 60862976 60865224 -101734706 + L1PB1 LINE L1 3956 6452 -415 441 0 0 0 chrX 60865228 60865277 -101734653 + (TA)n Simple_repeat Simple_repeat 2 50 0 2208 142 3 6 chrX 60865278 60865637 -101734293 + L1PB1 LINE L1 6510 6867 0 3811 189 71 3 chrX 60866741 60868033 -101731897 + L1PA8 LINE L1 4790 6165 -7 28 0 0 0 chrX 60869023 60869051 -101730879 + AT_rich Low_complexity Low_complexity 1 28 0 313 300 40 10 chrX 60869058 60869158 -101730772 - MIR SINE MIR -156 106 4 369 333 66 10 chrX 60869629 60869827 -101730103 - L2 LINE L2 -163 3150 2942 * 1457 284 28 40 chrX 60869809 60870280 -101729650 - L2 LINE L2 -657 2657 2193 230 203 34 0 chrX 60870287 60870346 -101729584 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 467 264 85 0 chrX 60870360 60870489 -101729441 - L2 LINE L2 -1609 1705 1566 1865 215 31 9 chrX 60870489 60870912 -101729018 - MSTB1 LTR MaLR 0 432 1 184 261 138 0 chrX 60871290 60871355 -101728575 + MER5A DNA MER1_type 27 100 -89 368 91 0 0 chrX 60871650 60871705 -101728225 - L1PA13 LINE L1 0 6163 6109 12371 250 35 18 chrX 60871714 60876922 -101723008 + L1P4 LINE L1 2 5775 -1041 4439 108 7 15 chrX 60876922 60877609 -101722321 + L1MA1 LINE L1 5616 6297 -5 12371 250 35 18 chrX 60877609 60878068 -101721862 + L1P4 LINE L1 5775 6225 -591 2564 166 43 13 chrX 60878168 60878379 -101721551 - L1P5 LINE L1 -444 5707 5504 219 36 0 0 chrX 60878379 60878407 -101721523 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2564 166 43 13 chrX 60878407 60878915 -101721015 - L1P5 LINE L1 -647 5504 4971 * 2571 216 41 43 chrX 60878913 60879339 -101720591 - L1M4 LINE L1 -407 6171 5745 659 150 39 0 chrX 60879339 60879466 -101720464 - L1MA6 LINE L1 -6 6294 6163 2571 216 41 43 chrX 60879466 60880151 -101719779 - L1M4 LINE L1 -833 5745 5041 246 239 90 0 chrX 60880207 60880274 -101719656 - L1M4 LINE L1 -2452 4088 4016 423 235 20 34 chrX 60880281 60880430 -101719500 - L1M4 LINE L1 -5414 1129 983 1055 232 60 81 chrX 60881315 60881442 -101718488 - L1M4 LINE L1 -6063 477 349 267 54 0 0 chrX 60881442 60881479 -101718451 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 297 51 0 0 chrX 60881480 60881519 -101718411 + (TA)n Simple_repeat Simple_repeat 1 39 0 1055 232 60 81 chrX 60881519 60881859 -101718071 - L1M4 LINE L1 -6190 350 18 373 177 0 0 chrX 60881859 60881921 -101718009 + MER5A DNA MER1_type 125 186 -3 611 331 160 3 chrX 60882040 60882384 -101717546 - L3 LINE CR1 -95 1482 1085 500 193 26 0 chrX 60882490 60882604 -101717326 - MER103 DNA DNA -2 164 48 26 30 0 0 chrX 60882699 60882732 -101717198 + AT_rich Low_complexity Low_complexity 1 33 0 323 286 35 98 chrX 60882783 60883070 -101716860 - L3 LINE CR1 -570 1007 739 219 274 0 0 chrX 60884096 60884147 -101715783 + L3b LINE CR1 1530 1580 -3 520 141 0 0 chrX 60884221 60884306 -101715624 - L1PA16 LINE L1 -13 6153 6069 27762 130 8 25 chrX 60884813 60890711 -101709219 - L1PA8 LINE L1 -16 6471 629 281 146 21 0 chrX 60891330 60891378 -101708552 + L3 LINE CR1 1335 1383 -194 2054 283 13 13 chrX 60891386 60891940 -101707990 + MLT1H1 LTR MaLR 2 555 0 295 268 7 130 chrX 60891941 60892079 -101707851 + L3 LINE CR1 1390 1510 -67 398 232 1 108 chrX 60892133 60892181 -101707749 - MER5A DNA MER1_type -26 163 111 1184 208 48 87 chrX 60892181 60892662 -101707268 - MLT2C2 LTR ERVL -2 462 1 398 232 1 108 chrX 60892662 60892783 -101707147 - MER5A DNA MER1_type -78 111 1 483 363 64 24 chrX 60893330 60893581 -101706349 - MIR SINE MIR -1 261 1 13582 174 30 27 chrX 60893694 60895287 -101704643 - L1MA1 LINE L1 0 7721 6133 2052 141 0 10 chrX 60895287 60895591 -101704339 - AluSx SINE Alu -11 301 1 13582 174 30 27 chrX 60895591 60900765 -101699165 - L1MA1 LINE L1 -1588 6133 549 236 305 30 46 chrX 60900770 60900901 -101699029 - L3 LINE CR1 -551 1026 898 2218 203 49 20 chrX 60900935 60901424 -101698506 + MLT1D LTR MaLR 1 503 -2 454 238 112 42 chrX 60901449 60901592 -101698338 - MIR3 SINE MIR -14 194 42 234 357 78 8 chrX 60901654 60901783 -101698147 - MIR SINE MIR -124 138 1 583 306 105 18 chrX 60902259 60902478 -101697452 + MIR SINE MIR 25 262 0 295 339 15 15 chrX 60902667 60902797 -101697133 + MIR3 SINE MIR 34 163 -45 279 374 26 13 chrX 60902895 60903050 -101696880 - L2 LINE L2 -588 2726 2570 771 275 55 30 chrX 60903603 60903839 -101696091 - MIR SINE MIR -4 258 17 23 0 0 0 chrX 60903956 60903979 -101695951 + AT_rich Low_complexity Low_complexity 1 23 0 209 33 33 0 chrX 60904074 60904104 -101695826 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1541 193 11 0 chrX 60904106 60904381 -101695549 + AluJb SINE Alu 1 278 -34 225 0 0 0 chrX 60904381 60904406 -101695524 + (TC)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chrX 60904405 60904427 -101695503 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 225 0 0 0 chrX 60904426 60904451 -101695479 + (GA)n Simple_repeat Simple_repeat 2 26 0 261 57 0 0 chrX 60904539 60904574 -101695356 + (CAG)n Simple_repeat Simple_repeat 2 36 0 1710 185 0 16 chrX 60904638 60904946 -101694984 - AluJo SINE Alu -9 303 1 733 311 54 50 chrX 60905411 60905835 -101694095 + MLT1J1 LTR MaLR 1 426 -20 6270 72 4 2 chrX 60906896 60908364 -101691566 + L1PA7 LINE L1 4481 5949 -205 1855 132 14 0 chrX 60908428 60908735 -101691195 + L1M2 LINE L1 5307 5618 -694 1365 277 57 26 chrX 60908771 60909229 -101690701 + L2 LINE L2 2219 2690 -624 1652 254 34 34 chrX 60909257 60909941 -101689989 + L1MDb LINE L1 46 895 -5514 2190 96 0 0 chrX 60909941 60910270 -101689660 + AluY SINE Alu 1 329 0 1652 254 34 34 chrX 60910270 60910291 -101689639 + L1MDb LINE L1 895 915 -5494 1081 127 0 0 chrX 60910296 60910454 -101689476 + AluSc SINE Alu 152 309 0 907 223 14 5 chrX 60910471 60910682 -101689248 + L1MDb LINE L1 908 1120 -5289 5988 95 24 2 chrX 60910721 60911591 -101688339 + L1PA13 LINE L1 5270 6158 -5 1935 220 104 28 chrX 60911570 60912312 -101687618 + L1MDb LINE L1 1092 1889 -4517 * 295 292 0 0 chrX 60912317 60912413 -101687517 + L1MDb LINE L1 1943 2038 -4368 633 220 95 116 chrX 60912418 60912740 -101687190 + L2 LINE L2 2798 3134 -179 41582 63 5 1 chrX 60912804 60918925 -101681005 - L1PA5 LINE L1 -4 6150 3 332 226 95 12 chrX 60918927 60919011 -101680919 + L2 LINE L2 3222 3312 -1 22 0 0 0 chrX 60919145 60919167 -101680763 + AT_rich Low_complexity Low_complexity 1 22 0 277 211 197 0 chrX 60919216 60919292 -101680638 - MIR SINE MIR -14 248 158 311 325 62 19 chrX 60919462 60919622 -101680308 - MIR SINE MIR -88 174 8 370 271 28 90 chrX 60919659 60919836 -101680094 + MER20B DNA MER1_type 14 179 -604 346 369 75 66 chrX 60919857 60920204 -101679726 - L2 LINE L2 -12 3260 2911 784 277 63 8 chrX 60920224 60920462 -101679468 + MIR SINE MIR 12 262 0 215 152 65 0 chrX 60920519 60920565 -101679365 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 499 300 86 42 chrX 60920673 60920986 -101678944 - L2 LINE L2 -527 2787 2461 400 303 30 8 chrX 60922011 60922143 -101677787 - MIR SINE MIR -69 193 59 312 262 65 47 chrX 60922420 60922527 -101677403 + L2 LINE L2 3148 3256 -16 25418 137 58 27 chrX 60922716 60926235 -101673695 + L1P3 LINE L1 227 4064 -2397 750 45 27 9 chrX 60926235 60926346 -101673584 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 25418 137 58 27 chrX 60926346 60928055 -101671875 + L1P3 LINE L1 4064 5718 -743 3588 197 81 11 chrX 60928205 60929046 -101670884 - L1PB4 LINE L1 -3 6855 5956 2997 222 22 12 chrX 60929062 60929208 -101670722 - L1PB4 LINE L1 -3096 3752 3609 1648 106 161 0 chrX 60929208 60929463 -101670467 + AluSq SINE Alu 1 296 -7 2997 222 22 12 chrX 60929463 60929615 -101670315 - L1PB4 LINE L1 -3239 3609 3460 16861 45 1 1 chrX 60929615 60932487 -101667443 - L1PA4 LINE L1 -6 6149 3276 2997 222 22 12 chrX 60932487 60933613 -101666317 - L1PB4 LINE L1 -3388 3460 2313 3296 148 2 12 chrX 60933613 60934175 -101665755 - L1PB1 LINE L1 -3 6148 5593 3322 178 10 16 chrX 60934175 60935285 -101664645 - L1P5 LINE L1 -497 5654 4549 21 36 0 0 chrX 60935504 60935532 -101664398 + AT_rich Low_complexity Low_complexity 1 28 0 3511 208 28 30 chrX 60936050 60936586 -101663344 - L1PB1 LINE L1 -1580 4566 4031 2887 3 0 0 chrX 60936586 60936897 -101663033 - AluYa5 SINE Alu 0 311 1 3511 208 28 30 chrX 60936897 60937334 -101662596 - L1PB1 LINE L1 -2115 4031 3208 6704 65 10 0 chrX 60937434 60939018 -101660912 + L1PA7 LINE L1 4549 6143 -11 29 0 0 0 chrX 60939019 60939048 -101660882 + AT_rich Low_complexity Low_complexity 1 29 0 1921 153 3 3 chrX 60939312 60939606 -101660324 - AluSx SINE Alu -18 294 1 764 192 45 0 chrX 60939606 60939783 -101660147 + L1MA2 LINE L1 6120 6304 0 413 245 114 27 chrX 60939862 60940046 -101659884 + MER112 DNA MER1_type 40 239 -21 376 250 38 38 chrX 60940353 60940485 -101659445 - MIR SINE MIR -82 180 49 457 332 53 5 chrX 60940563 60940750 -101659180 + MIR SINE MIR 52 247 -15 375 318 16 8 chrX 60940807 60940936 -101658994 - LTR33 LTR ERVL -391 130 1 225 280 172 27 chrX 60941188 60941374 -101658556 + L2 LINE L2 2579 2791 -523 790 290 16 0 chrX 60941377 60941563 -101658367 + MIR SINE MIR 18 206 -56 470 341 123 48 chrX 60941596 60941742 -101658188 + L2 LINE L2 2869 3003 -269 1957 143 10 3 chrX 60941742 60942049 -101657881 + AluSg1 SINE Alu 1 309 0 470 341 123 48 chrX 60942049 60942260 -101657670 + L2 LINE L2 3003 3253 -19 5288 168 16 6 chrX 60942362 60944215 -101655715 - L1MA2 LINE L1 -200 6104 4234 828 170 0 0 chrX 60944247 60944388 -101655542 + L1PBa LINE L1 187 327 -6536 454 192 0 0 chrX 60944392 60944470 -101655460 + L1PA10 LINE L1 6079 6156 -12 43 20 0 0 chrX 60944489 60944539 -101655391 + AT_rich Low_complexity Low_complexity 1 50 0 1402 110 34 0 chrX 60944677 60944886 -101655044 - L1PA10 LINE L1 -49 6119 5904 848 274 46 6 chrX 60944895 60945254 -101654676 + L2 LINE L2 2698 3065 -248 1331 209 75 68 chrX 60945255 60945786 -101654144 + L1MC4 LINE L1 7501 8035 -7 268 287 9 9 chrX 60945804 60945912 -101654018 + L1MC4a LINE L1 6361 6468 -1340 207 0 0 0 chrX 60946068 60946091 -101653839 + (A)n Simple_repeat Simple_repeat 1 23 0 1530 217 68 33 chrX 60946109 60946592 -101653338 + L1PBa LINE L1 400 899 -5964 1124 313 99 13 chrX 60946819 60947366 -101652564 + L2 LINE L2 1401 1994 -1320 4294 190 28 27 chrX 60947373 60948576 -101651354 - L1MB1 LINE L1 -3 6165 4958 3653 158 33 28 chrX 60948576 60949300 -101650630 - L1MA7 LINE L1 -9 6282 5555 4294 190 28 27 chrX 60949300 60949538 -101650392 - L1MB1 LINE L1 -1210 4958 4722 4690 202 32 4 chrX 60949544 60950602 -101649328 + L1MB1 LINE L1 3623 4710 -1436 2616 32 0 0 chrX 60950617 60950926 -101649004 + L1PA3 LINE L1 5842 6150 -5 261 0 0 0 chrX 60950938 60950967 -101648963 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1145 302 83 18 chrX 60950967 60951471 -101648459 + L2 LINE L2 2001 2537 -777 293 269 0 0 chrX 60951478 60951556 -101648374 + L1 LINE L1 4151 4228 -1918 5190 167 21 41 chrX 60951776 60953664 -101646266 - L1PB1 LINE L1 0 6867 5015 4459 149 48 13 chrX 60953653 60955654 -101644276 - L1PB1 LINE L1 -2808 4054 1679 * 2258 101 0 3 chrX 60955654 60955950 -101643980 - AluY SINE Alu -16 295 1 4459 149 48 13 chrX 60955950 60957270 -101642660 - L1PB1 LINE L1 -5183 1679 407 207 0 0 0 chrX 60957298 60957321 -101642609 + (T)n Simple_repeat Simple_repeat 1 23 0 2281 193 37 0 chrX 60957798 60958229 -101641701 + L1PA15 LINE L1 5609 6055 -110 7115 166 25 11 chrX 60958229 60960743 -101639187 - L1MA3 LINE L1 -333 7391 2273 * 9299 211 33 8 chrX 60960721 60962536 -101637394 - L1MA3 LINE L1 -5518 2047 188 2243 154 37 18 chrX 60962542 60962925 -101637005 - MER21A LTR ERV1 -6 925 536 1005 200 51 5 chrX 60962927 60963122 -101636808 + MER21-int LTR ERV1 3579 3782 -409 1075 193 67 33 chrX 60963126 60963421 -101636509 - MER21A LTR ERV1 -421 442 108 1950 159 0 0 chrX 60963421 60963717 -101636213 - AluSx SINE Alu -16 296 1 1075 193 67 33 chrX 60963717 60963827 -101636103 - MER21A LTR ERV1 -755 108 3 11034 195 52 17 chrX 60963830 60963870 -101636060 - MER21A-int LTR ERV1 0 4191 4154 414 0 0 0 chrX 60963870 60963916 -101636014 + (TA)n Simple_repeat Simple_repeat 2 47 0 11034 195 52 17 chrX 60963916 60964684 -101635246 - MER21A-int LTR ERV1 -37 4154 3414 210 71 0 0 chrX 60964684 60964712 -101635218 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 11034 195 52 17 chrX 60964712 60966477 -101633453 - MER21A-int LTR ERV1 -777 3414 1439 1285 165 47 9 chrX 60968823 60969089 -101630841 - MER21A-int LTR ERV1 -2408 4350 1185 5515 114 44 2 chrX 60969090 60969923 -101630007 - L1PA11 LINE L1 0 6174 5307 313 280 0 47 chrX 60969925 60970032 -101629898 + L1M1 LINE L1 333 434 -7131 2457 144 55 9 chrX 60970037 60970474 -101629456 + L1MA2 LINE L1 5844 6300 -4 629 242 187 7 chrX 60970504 60970777 -101629153 - L1M4 LINE L1 -1538 4608 4287 1142 233 6 38 chrX 61020780 61021093 -101578837 - L1P LINE L1 -873 5273 4971 * 2571 216 41 43 chrX 61021091 61021517 -101578413 - L1M4 LINE L1 -407 6171 5745 659 150 39 0 chrX 61021517 61021644 -101578286 - L1MA6 LINE L1 -6 6294 6163 2571 216 41 43 chrX 61021644 61022329 -101577601 - L1M4 LINE L1 -833 5745 5041 246 239 90 0 chrX 61022385 61022452 -101577478 - L1M4 LINE L1 -2452 4088 4016 423 235 20 34 chrX 61022459 61022608 -101577322 - L1M4 LINE L1 -5414 1129 983 1055 232 60 81 chrX 61023493 61023620 -101576310 - L1M4 LINE L1 -6063 477 349 267 54 0 0 chrX 61023620 61023657 -101576273 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 297 51 0 0 chrX 61023658 61023697 -101576233 + (TA)n Simple_repeat Simple_repeat 2 40 0 1055 232 60 81 chrX 61023697 61024037 -101575893 - L1M4 LINE L1 -6190 350 18 361 194 0 0 chrX 61024037 61024099 -101575831 + MER5A DNA MER1_type 125 186 -3 611 331 160 3 chrX 61024218 61024562 -101575368 - L3 LINE CR1 -95 1482 1085 500 193 26 0 chrX 61024668 61024782 -101575148 - MER103 DNA DNA -2 164 48 26 30 0 0 chrX 61024877 61024910 -101575020 + AT_rich Low_complexity Low_complexity 1 33 0 323 286 35 98 chrX 61024961 61025248 -101574682 - L3 LINE CR1 -570 1007 739 219 274 0 0 chrX 61026274 61026325 -101573605 + L3b LINE CR1 1530 1580 -3 520 141 0 0 chrX 61026399 61026484 -101573446 - L1PA16 LINE L1 -13 6153 6069 27751 130 8 25 chrX 61026991 61032889 -101567041 - L1PA8 LINE L1 -16 6471 629 281 146 21 0 chrX 61033508 61033556 -101566374 + L3 LINE CR1 1335 1383 -194 2054 283 13 13 chrX 61033564 61034118 -101565812 + MLT1H1 LTR MaLR 2 555 0 295 268 7 130 chrX 61034119 61034257 -101565673 + L3 LINE CR1 1390 1510 -67 398 232 1 108 chrX 61034311 61034359 -101565571 - MER5A DNA MER1_type -26 163 111 1184 208 48 87 chrX 61034359 61034840 -101565090 - MLT2C2 LTR ERVL -2 462 1 398 232 1 108 chrX 61034840 61034961 -101564969 - MER5A DNA MER1_type -78 111 1 483 363 64 24 chrX 61035508 61035759 -101564171 - MIR SINE MIR -1 261 1 13582 174 30 27 chrX 61035872 61037465 -101562465 - L1MA1 LINE L1 0 7721 6133 2052 141 0 10 chrX 61037465 61037769 -101562161 - AluSx SINE Alu -11 301 1 13582 174 30 27 chrX 61037769 61042943 -101556987 - L1MA1 LINE L1 -1588 6133 549 236 305 30 46 chrX 61042948 61043079 -101556851 - L3 LINE CR1 -551 1026 898 2218 203 49 20 chrX 61043113 61043602 -101556328 + MLT1D LTR MaLR 1 503 -2 454 238 112 42 chrX 61043627 61043770 -101556160 - MIR3 SINE MIR -14 194 42 234 357 78 8 chrX 61043832 61043961 -101555969 - MIR SINE MIR -124 138 1 583 306 105 18 chrX 61044437 61044656 -101555274 + MIR SINE MIR 25 262 0 295 339 15 15 chrX 61044845 61044975 -101554955 + MIR3 SINE MIR 34 163 -45 279 374 26 13 chrX 61045073 61045228 -101554702 - L2 LINE L2 -588 2726 2570 771 275 55 30 chrX 61045781 61046017 -101553913 - MIR SINE MIR -4 258 17 23 0 0 0 chrX 61046134 61046157 -101553773 + AT_rich Low_complexity Low_complexity 1 23 0 209 33 33 0 chrX 61046252 61046282 -101553648 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1541 193 11 0 chrX 61046284 61046559 -101553371 + AluJb SINE Alu 1 278 -34 225 0 0 0 chrX 61046559 61046584 -101553346 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chrX 61046583 61046608 -101553322 + (TA)n Simple_repeat Simple_repeat 1 25 0 1710 185 0 16 chrX 61046817 61047125 -101552805 - AluJo SINE Alu -9 303 1 733 311 54 50 chrX 61047590 61048014 -101551916 + MLT1J1 LTR MaLR 1 426 -20 6270 72 4 2 chrX 61049075 61050543 -101549387 + L1PA7 LINE L1 4481 5949 -205 1855 132 14 0 chrX 61050607 61050914 -101549016 + L1M2 LINE L1 5307 5618 -694 1365 277 57 26 chrX 61050950 61051408 -101548522 + L2 LINE L2 2219 2690 -624 1652 254 32 34 chrX 61051436 61052121 -101547809 + L1MDb LINE L1 46 895 -5514 2190 96 0 0 chrX 61052121 61052450 -101547480 + AluY SINE Alu 1 329 0 1652 254 32 34 chrX 61052450 61052471 -101547459 + L1MDb LINE L1 895 915 -5494 1081 127 0 0 chrX 61052476 61052634 -101547296 + AluSc SINE Alu 152 309 0 907 223 14 5 chrX 61052651 61052862 -101547068 + L1MDb LINE L1 908 1120 -5289 5988 95 24 2 chrX 61052901 61053771 -101546159 + L1PA13 LINE L1 5270 6158 -5 1935 220 104 28 chrX 61053750 61054492 -101545438 + L1MDb LINE L1 1092 1889 -4517 * 295 292 0 0 chrX 61054497 61054593 -101545337 + L1MDb LINE L1 1943 2038 -4368 633 220 95 116 chrX 61054598 61054920 -101545010 + L2 LINE L2 2798 3134 -179 25411 58 5 1 chrX 61054984 61061105 -101538825 - L1PA5 LINE L1 -4 6150 3 330 226 95 12 chrX 61061107 61061191 -101538739 + L2 LINE L2 3222 3312 -1 22 0 0 0 chrX 61061325 61061347 -101538583 + AT_rich Low_complexity Low_complexity 1 22 0 272 211 197 0 chrX 61061396 61061472 -101538458 - MIR SINE MIR -14 248 158 306 325 62 19 chrX 61061642 61061802 -101538128 - MIR SINE MIR -88 174 8 335 274 0 21 chrX 61061921 61062016 -101537914 + MER20B DNA MER1_type 87 179 -604 340 369 75 66 chrX 61062037 61062384 -101537546 - L2 LINE L2 -12 3260 2911 777 277 63 8 chrX 61062404 61062642 -101537288 + MIR SINE MIR 12 262 0 215 152 65 0 chrX 61062699 61062745 -101537185 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 503 300 86 42 chrX 61062853 61063166 -101536764 - L2 LINE L2 -527 2787 2461 404 303 30 8 chrX 61064192 61064324 -101535606 - MIR SINE MIR -69 193 59 315 262 65 47 chrX 61064601 61064708 -101535222 + L2 LINE L2 3148 3256 -16 16084 140 70 32 chrX 61064897 61068418 -101531512 + L1P3 LINE L1 227 4027 -2434 750 45 27 9 chrX 61068418 61068529 -101531401 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 16084 140 70 32 chrX 61068529 61068971 -101530959 + L1P3 LINE L1 4027 4451 -2010 759 170 0 20 chrX 61069137 61069284 -101530646 - MER3 DNA MER1_type 0 209 66 225 304 87 0 chrX 61070042 61070134 -101529796 + MIR SINE MIR 16 115 -93 257 146 83 0 chrX 61070548 61070596 -101529334 - L2 LINE L2 -1 3312 3261 326 297 39 16 chrX 61071112 61071240 -101528690 - MIR SINE MIR -83 179 49 392 250 0 0 chrX 61071445 61071521 -101528409 + MIR SINE MIR 18 93 -169 2114 116 0 49 chrX 61071599 61071927 -101528003 + AluSx SINE Alu 1 312 0 206 250 58 0 chrX 61072011 61072063 -101527867 - L2 LINE L2 -1 3271 3217 182 368 80 40 chrX 61073064 61073189 -101526741 - MIR3 SINE MIR -39 169 40 32 75 0 0 chrX 61073424 61073491 -101526439 + AT_rich Low_complexity Low_complexity 1 67 0 365 319 0 0 chrX 61073609 61073700 -101526230 + MIR SINE MIR 35 125 -137 367 171 0 0 chrX 61073831 61073913 -101526017 - L1MB3 LINE L1 -1 6182 6101 223 325 156 13 chrX 61074117 61074271 -101525659 + MIR3 SINE MIR 18 193 -15 226 321 0 36 chrX 61074282 61074366 -101525564 + MIR SINE MIR 18 98 -110 1096 210 56 13 chrX 61074373 61074564 -101525366 + MLT2C1 LTR ERVL 7 188 -276 6881 55 5 2 chrX 61074564 61075745 -101524185 + L1PA6 LINE L1 4958 6140 -14 1096 210 56 13 chrX 61075745 61075981 -101523949 + MLT2C1 LTR ERVL 188 464 0 256 200 193 133 chrX 61076018 61076123 -101523807 - L2 LINE L2 -27 3286 3170 388 86 12 37 chrX 61076123 61076204 -101523726 + L1MA4 LINE L1 6222 6300 0 256 200 193 133 chrX 61076204 61076233 -101523697 - L2 LINE L2 -143 3170 3144 439 295 81 7 chrX 61076475 61076624 -101523306 + MIR SINE MIR 28 187 -75 24 0 0 0 chrX 61077730 61077754 -101522176 + AT_rich Low_complexity Low_complexity 1 24 0 592 226 0 32 chrX 61078180 61078304 -101521626 - L2 LINE L2 -5 3308 3189 664 294 91 45 chrX 61078353 61078816 -101521114 - L2 LINE L2 -121 3192 2723 303 340 39 26 chrX 61078793 61078946 -101520984 + MIR3 SINE MIR 26 180 -28 * 847 159 0 8 chrX 61079330 61079456 -101520474 + FLAM_C SINE Alu 1 125 -18 1501 254 96 13 chrX 61080506 61081019 -101518911 + L2 LINE L2 2753 3313 0 209 356 59 25 chrX 61081071 61081189 -101518741 + MIR SINE MIR 38 159 -103 259 289 36 20 chrX 61081310 61081578 -101518352 - L1MC/D LINE L1 -759 5395 5254 835 334 157 28 chrX 61081631 61082851 -101517079 - L1MC/D LINE L1 -925 5221 3819 1429 193 30 24 chrX 61082851 61083146 -101516784 + AluSx SINE Alu 1 297 -15 835 334 157 28 chrX 61083146 61083194 -101516736 - L1MC/D LINE L1 -2327 3819 3779 662 278 125 7 chrX 61083208 61083503 -101516427 + MER46C DNA MER2_type 8 337 -1 290 330 152 22 chrX 61083524 61083761 -101516169 - L2 LINE L2 -213 3059 2793 244 216 81 0 chrX 61085932 61086006 -101513924 - MER103 DNA DNA -75 91 12 203 326 62 93 chrX 61086134 61086263 -101513667 + MIR SINE MIR 17 141 -67 685 302 54 16 chrX 61086787 61087029 -101512901 - MIR SINE MIR -10 252 2 497 317 24 18 chrX 61087156 61087320 -101512610 + MIR SINE MIR 28 192 -70 770 107 0 0 chrX 61087413 61087525 -101512405 - L1P LINE L1 -1518 4628 4517 284 214 43 43 chrX 61087527 61087597 -101512333 - MIR SINE MIR -74 188 119 235 407 91 9 chrX 61087732 61087963 -101511967 + L2 LINE L2 2725 2974 -340 823 278 174 20 chrX 61088014 61088690 -101511240 - L2 LINE L2 0 3313 2535 251 291 26 143 chrX 61088677 61088866 -101511064 + L2 LINE L2 3015 3181 -91 * 186 43 0 0 chrX 61088879 61088902 -101511028 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1860 164 14 7 chrX 61088904 61089191 -101510739 - AluJb SINE Alu -23 289 1 213 271 17 34 chrX 61089667 61089726 -101510204 + L2 LINE L2 3136 3193 -79 2150 148 29 3 chrX 61089771 61090155 -101509775 + L1MA2 LINE L1 5464 5857 -447 3417 127 27 17 chrX 61090155 61090755 -101509175 + L1MA4 LINE L1 5688 6294 -6 1667 209 7 42 chrX 61090843 61091273 -101508657 - L1ME3A LINE L1 0 6170 5756 336 261 165 0 chrX 61091296 61091411 -101508519 - MIR SINE MIR -49 213 80 341 252 102 28 chrX 61091653 61091798 -101508132 + MIR3 SINE MIR 33 192 -16 443 233 23 30 chrX 61092083 61092216 -101507714 - MLT1J LTR MaLR -379 132 1 566 327 132 16 chrX 61093243 61093546 -101506384 + L2 LINE L2 2934 3271 -1 581 108 16 31 chrX 61093548 61093677 -101506253 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 361 83 0 33 chrX 61093777 61093837 -101506093 + (GGGGA)n Simple_repeat Simple_repeat 1 58 0 245 209 0 0 chrX 61093899 61093942 -101505988 + MIR SINE MIR 68 110 -152 * 263 335 89 19 chrX 61093941 61094099 -101505831 + MIR3 SINE MIR 40 208 0 * 269 300 14 0 chrX 61094096 61094166 -101505764 - L2 LINE L2 -9 3263 3193 205 176 0 0 chrX 61094192 61094226 -101505704 + MIR SINE MIR 114 147 -115 472 285 8 0 chrX 61094293 61094416 -101505514 + MIR3 SINE MIR 85 208 0 189 107 0 0 chrX 61094816 61094844 -101505086 + (TC)n Simple_repeat Simple_repeat 1 28 0 219 125 10 52 chrX 61094896 61094992 -101504938 + (TA)n Simple_repeat Simple_repeat 2 93 0 364 252 16 73 chrX 61095466 61095589 -101504341 + MIR SINE MIR 20 135 -73 1006 246 14 0 chrX 61095657 61095877 -101504053 - MER58A DNA MER1_type -1 223 1 443 339 185 6 chrX 61095937 61096383 -101503547 + L3 LINE CR1 991 1567 -10 436 288 96 80 chrX 61097220 61097470 -101502460 + MIR SINE MIR 8 261 -1 429 358 54 9 chrX 61097477 61097698 -101502232 + MIR SINE MIR 20 250 -12 266 312 213 0 chrX 61098176 61098317 -101501613 + MIR3 SINE MIR 31 201 -7 686 268 38 19 chrX 61098831 61099040 -101500890 - L2 LINE L2 -1133 2181 1969 1671 223 65 33 chrX 61100575 61100927 -101499003 + L1MDb LINE L1 593 967 -5442 3825 174 33 33 chrX 61100927 61101712 -101498218 + LTR1 LTR ERV1 1 785 0 1671 223 65 33 chrX 61101712 61101848 -101498082 + L1MDb LINE L1 967 1097 -5312 * 12682 147 24 28 chrX 61101847 61103878 -101496052 - L1P LINE L1 -3103 3043 1022 2217 112 0 0 chrX 61103878 61104174 -101495756 - AluY SINE Alu -15 296 1 12682 147 24 28 chrX 61104174 61104595 -101495335 - L1P LINE L1 -5124 1022 601 2648 233 90 38 chrX 61104696 61106502 -101493428 + L1MDb LINE L1 1167 3067 -3339 405 188 0 0 chrX 61106513 61106593 -101493337 - Ricksha DNA DNA -10 3244 3165 6599 157 16 19 chrX 61106593 61107839 -101492091 - Ricksha DNA DNA -184 3062 1821 1072 208 42 8 chrX 61107837 61108077 -101491853 - Ricksha DNA DNA -2957 289 42 * 4228 256 63 28 chrX 61108093 61109096 -101490834 + L1MDb LINE L1 3065 4156 -2250 2105 128 10 0 chrX 61109096 61109385 -101490545 + AluSg SINE Alu 3 294 -16 4228 256 63 28 chrX 61109385 61110125 -101489805 + L1MDb LINE L1 4156 4869 -1537 * 15480 178 45 44 chrX 61110123 61112733 -101487197 + L1M1 LINE L1 14 2620 -4945 7233 47 1 0 chrX 61112733 61113665 -101486265 + L1PA6 LINE L1 5217 6149 -5 515 160 10 10 chrX 61113666 61113766 -101486164 - Tigger1 DNA MER2_type -67 2351 2252 15480 178 45 44 chrX 61113766 61114173 -101485757 + L1M1 LINE L1 2619 3135 -4430 6013 158 41 4 chrX 61114191 61115654 -101484276 - L1MA1 LINE L1 0 6302 4800 25 0 0 0 chrX 61115668 61115693 -101484237 + AT_rich Low_complexity Low_complexity 1 25 0 6263 151 14 17 chrX 61115693 61117011 -101482919 - L1MA1 LINE L1 0 7721 6416 323 77 0 19 chrX 61117011 61117063 -101482867 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 6295 97 29 2 chrX 61117063 61118652 -101481278 - L1PA8 LINE L1 -24 6148 4518 23554 125 95 45 chrX 61118752 61122482 -101477448 - L1PA3 LINE L1 -108 6047 1923 2111 121 0 3 chrX 61122482 61122771 -101477159 - AluSx SINE Alu -24 288 1 23554 125 95 45 chrX 61122771 61124783 -101475147 - L1PA3 LINE L1 -4232 1923 12 328 210 12 12 chrX 61124821 61124905 -101475025 - MLT1D LTR MaLR -207 298 229 7702 199 20 4 chrX 61124905 61126555 -101473375 - L1MA1 LINE L1 -1147 6418 4743 14458 203 37 19 chrX 61126668 61128202 -101471728 - L1MA1 LINE L1 -3861 3704 2199 185 0 40 0 chrX 61128202 61128227 -101471703 + (TC)n Simple_repeat Simple_repeat 1 26 0 14458 203 37 19 chrX 61128227 61129015 -101470915 - L1MA1 LINE L1 -5366 2199 1427 2518 125 5 8 chrX 61129015 61129391 -101470539 - THE1C LTR MaLR 0 375 1 14458 203 37 19 chrX 61129391 61130343 -101469587 - L1MA1 LINE L1 -6138 1427 27 2749 180 22 6 chrX 61130347 61131207 -101468723 + L1M1 LINE L1 3123 3995 -3570 358 113 0 0 chrX 61131374 61131436 -101468494 - L1M LINE L1 -981 5321 5260 * 1465 263 45 13 chrX 61131409 61131880 -101468050 - L1 LINE L1 -3094 3052 2567 1836 232 66 8 chrX 61132707 61133225 -101466705 - L1ME1 LINE L1 -169 5997 5450 6495 126 15 29 chrX 61133300 61134387 -101465543 + MER11C LTR ERVK 1 1071 0 1866 204 14 8 chrX 61134737 61135100 -101464830 + MLT1A1 LTR MaLR 1 365 0 1407 205 6 31 chrX 61135102 61135331 -101464599 + MLT1A1-int LTR MaLR 2 222 -1513 2399 186 17 2 chrX 61135331 61135751 -101464179 - MSTB LTR MaLR 0 426 1 1407 205 6 31 chrX 61135751 61135848 -101464082 + MLT1A1-int LTR MaLR 222 320 -1415 1204 239 16 4 chrX 61135997 61136298 -101463632 + MLT1A1-int LTR MaLR 286 600 -771 257 54 71 0 chrX 61136298 61136354 -101463576 + (TA)n Simple_repeat Simple_repeat 1 60 0 3380 211 100 104 chrX 61136361 61136541 -101463389 + MLT1A1-int LTR MaLR 592 771 -964 1681 189 14 0 chrX 61136541 61136826 -101463104 - AluJb SINE Alu -23 289 1 3380 211 100 104 chrX 61136826 61137794 -101462136 + MLT1A1-int LTR MaLR 771 1735 0 1060 233 58 4 chrX 61137854 61138094 -101461836 + MLT1A1 LTR MaLR 113 365 0 379 352 50 11 chrX 61138314 61138493 -101461437 - MIR3 SINE MIR 0 208 23 791 278 63 40 chrX 61138819 61139071 -101460859 - MIR SINE MIR 0 262 5 553 335 117 45 chrX 61139295 61139524 -101460406 - L2 LINE L2 -1 3271 3003 1957 143 10 3 chrX 61139524 61139831 -101460099 - AluSg1 SINE Alu 0 309 1 553 335 117 45 chrX 61139831 61139977 -101459953 - L2 LINE L2 -269 3003 2869 790 290 16 0 chrX 61140010 61140196 -101459734 - MIR SINE MIR -56 206 18 225 280 172 27 chrX 61140199 61140385 -101459545 - L2 LINE L2 -523 2791 2579 388 310 16 8 chrX 61140637 61140766 -101459164 + LTR33 LTR ERVL 1 130 -391 457 332 53 5 chrX 61140822 61141009 -101458921 - MIR SINE MIR -15 247 52 376 250 38 38 chrX 61141087 61141219 -101458711 + MIR SINE MIR 49 180 -82 398 250 114 27 chrX 61141526 61141710 -101458220 - MER112 DNA MER1_type -21 239 40 6042 169 18 8 chrX 61141789 61141966 -101457964 - L1MA2 LINE L1 0 6304 6130 2060 144 3 3 chrX 61141966 61142278 -101457652 + AluSx SINE Alu 1 312 0 6042 169 18 8 chrX 61142278 61144149 -101455781 - L1MA2 LINE L1 -174 6130 4234 828 170 0 0 chrX 61144181 61144322 -101455608 + L1PB1 LINE L1 187 327 -6536 454 192 0 0 chrX 61144326 61144404 -101455526 + L1PA10 LINE L1 6079 6156 -12 43 20 0 0 chrX 61144423 61144473 -101455457 + AT_rich Low_complexity Low_complexity 1 50 0 1402 110 34 0 chrX 61144611 61144820 -101455110 - L1PA10 LINE L1 -49 6119 5904 848 274 46 6 chrX 61144829 61145188 -101454742 + L2 LINE L2 2698 3065 -248 1331 209 75 68 chrX 61145189 61145720 -101454210 + L1MC4 LINE L1 7501 8035 -7 268 287 9 9 chrX 61145738 61145846 -101454084 + L1MC4a LINE L1 6361 6468 -1340 207 0 0 0 chrX 61146002 61146025 -101453905 + (A)n Simple_repeat Simple_repeat 1 23 0 13109 150 107 10 chrX 61146053 61147373 -101452557 + L1PB1 LINE L1 407 1598 -5264 2258 101 0 3 chrX 61147373 61147669 -101452261 + AluY SINE Alu 1 295 -16 13109 150 107 10 chrX 61147669 61149670 -101450260 + L1PB1 LINE L1 1598 4054 -2808 5190 167 21 41 chrX 61149659 61151547 -101448383 + L1PB1 LINE L1 5015 6867 0 * 293 269 0 0 chrX 61151767 61151845 -101448085 - L1 LINE L1 -1918 4228 4151 1145 302 83 18 chrX 61151852 61152356 -101447574 - L2 LINE L2 -777 2537 2001 351 0 0 0 chrX 61152356 61152395 -101447535 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2616 32 0 0 chrX 61152397 61152706 -101447224 - L1PA3 LINE L1 -5 6150 5842 4690 202 32 4 chrX 61152721 61153779 -101446151 - L1MB1 LINE L1 -1436 4710 3623 4294 190 28 28 chrX 61153785 61154024 -101445906 + L1MB1 LINE L1 4722 4959 -1209 3653 158 33 28 chrX 61154024 61154747 -101445183 + L1MA7 LINE L1 5555 6282 -9 4294 190 28 28 chrX 61154747 61155950 -101443980 + L1MB1 LINE L1 4959 6165 -3 1124 313 99 13 chrX 61155957 61156504 -101443426 - L2 LINE L2 -1320 1994 1401 28 0 0 0 chrX 61157082 61157110 -101442820 + AT_rich Low_complexity Low_complexity 1 28 0 2790 80 21 0 chrX 61157110 61157497 -101442433 - L1PA7 LINE L1 -9 6145 5751 893 259 13 21 chrX 61357497 61357733 -101242197 - L2 LINE L2 -773 2541 2308 405 344 0 55 chrX 61357785 61357968 -101241962 - MIR3 SINE MIR -23 185 13 460 291 8 0 chrX 61358251 61358385 -101241545 - MIR3 SINE MIR -9 199 65 539 277 230 14 chrX 61358503 61358716 -101241214 - MIR SINE MIR 0 262 4 921 276 14 0 chrX 61359048 61359265 -101240665 - MIR SINE MIR -35 227 8 323 330 39 10 chrX 61359386 61359489 -101240441 - MIR3 SINE MIR -95 113 8 204 275 29 43 chrX 61361440 61361509 -101238421 + L2 LINE L2 3244 3311 -2 224 246 29 29 chrX 61361513 61361582 -101238348 + L3 LINE CR1 941 1009 -568 708 185 40 65 chrX 61361701 61361901 -101238029 - MER2 DNA MER2_type -145 200 6 215 333 14 0 chrX 61361915 61361984 -101237946 + L3 LINE CR1 1013 1082 -495 249 272 139 70 chrX 61362016 61362174 -101237756 + L3 LINE CR1 1209 1377 -200 2027 116 36 10 chrX 61362176 61362355 -101237575 - AluSq SINE Alu -3 310 118 233 29 29 0 chrX 61362355 61362389 -101237541 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2027 116 36 10 chrX 61362389 61362511 -101237419 - AluSq SINE Alu -195 118 1 396 103 0 0 chrX 61362597 61362655 -101237275 + (TG)n Simple_repeat Simple_repeat 2 59 0 766 209 0 6 chrX 61363556 61363728 -101236202 - L1P LINE L1 -2677 3469 3299 387 305 18 43 chrX 61364628 61364792 -101235138 - MIR SINE MIR -48 214 55 1692 181 30 0 chrX 61364817 61365088 -101234842 - AluSx SINE Alu -33 279 1 315 320 80 8 chrX 61365301 61365426 -101234504 - L2 LINE L2 -5 3267 3134 410 309 47 26 chrX 61365913 61366104 -101233826 - MIR SINE MIR -15 247 53 322 331 39 16 chrX 61366727 61366854 -101233076 + MIR SINE MIR 20 149 -113 273 293 78 48 chrX 61367391 61367558 -101232372 - MIR3 SINE MIR -4 204 33 222 196 65 0 chrX 61371101 61371147 -101228783 + MIR SINE MIR 118 166 -96 456 291 14 14 chrX 61372027 61372168 -101227762 - MIR SINE MIR -74 188 48 321 291 19 0 chrX 61372772 61372879 -101227051 - MIR SINE MIR -58 150 65 21 36 0 0 chrX 61376010 61376038 -101223892 + AT_rich Low_complexity Low_complexity 1 28 0 3897 164 28 33 chrX 61376174 61376984 -101222946 - L1MB7 LINE L1 -120 6064 5259 421 308 157 20 chrX 61377621 61377819 -101222111 + MIR SINE MIR 19 243 -19 473 260 49 79 chrX 61378069 61378298 -101221632 - MIR3 SINE MIR -42 220 1 714 288 30 72 chrX 61379695 61380056 -101219874 + L2 LINE L2 2968 3313 0 225 322 112 21 chrX 61380108 61380251 -101219679 + MER5B DNA MER1_type 7 162 -16 200 98 0 49 chrX 61380261 61380302 -101219628 + (TCTCC)n Simple_repeat Simple_repeat 2 40 0 374 286 230 0 chrX 61380721 61380882 -101219048 - MIR SINE MIR -11 251 54 456 347 36 12 chrX 61381742 61381909 -101218021 - MER5B DNA MER1_type -3 175 5 2218 106 13 23 chrX 61384092 61384395 -101215535 + AluSx SINE Alu 1 300 -12 282 263 271 0 chrX 61385408 61385541 -101214389 + L2 LINE L2 2866 3034 -238 207 176 0 78 chrX 61385668 61385719 -101214211 + L2 LINE L2 3226 3272 0 562 261 11 41 chrX 61386144 61386332 -101213598 - MIR3 SINE MIR -63 145 1 341 300 116 16 chrX 61386773 61386949 -101212981 + MIR SINE MIR 5 192 -64 228 293 183 67 chrX 61388034 61388198 -101211732 + L2 LINE L2 3080 3262 -10 1606 11 0 0 chrX 61388230 61388409 -101211521 + AluYb8 SINE Alu 131 309 -9 302 299 68 34 chrX 61389485 61389602 -101210328 + MIR SINE MIR 49 169 -93 182 333 77 13 chrX 61389764 61389842 -101210088 + L3 LINE CR1 1483 1565 -12 210 250 0 0 chrX 61390441 61390489 -101209441 + A-rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chrX 61391755 61391785 -101208145 + AT_rich Low_complexity Low_complexity 1 30 0 2020 112 33 23 chrX 61392464 61392768 -101207162 - AluSc SINE Alu -2 307 1 1468 208 11 7 chrX 61393124 61393408 -101206522 - AluJo SINE Alu -23 289 5 23 54 0 0 chrX 61393525 61393562 -101206368 + AT_rich Low_complexity Low_complexity 1 37 0 1975 141 7 3 chrX 61393790 61394081 -101205849 + AluJb SINE Alu 7 298 -14 28 71 0 0 chrX 61394599 61394655 -101205275 + AT_rich Low_complexity Low_complexity 1 56 0 1061 166 0 48 chrX 61394745 61394962 -101204968 + AluJo SINE Alu 105 312 0 2665 122 41 14 chrX 61395011 61395428 -101204502 + MSTA LTR MaLR 1 428 0 283 182 155 0 chrX 61396068 61396151 -101203779 - MIR SINE MIR -37 171 72 1048 230 23 0 chrX 61396228 61396445 -101203485 - MER58A DNA MER1_type 0 224 3 385 285 76 53 chrX 61397046 61397276 -101202654 + MIR SINE MIR 3 229 -33 2232 100 7 0 chrX 61397402 61397693 -101202237 - AluSg SINE Alu -13 297 5 347 316 0 66 chrX 61398603 61398739 -101201191 + L2 LINE L2 3134 3260 -12 42 48 0 0 chrX 61399334 61399397 -101200533 + AT_rich Low_complexity Low_complexity 1 63 0 3273 115 16 14 chrX 61399414 61399970 -101199960 + L1MA2 LINE L1 5748 6304 0 225 288 0 62 chrX 61400542 61400622 -101199308 - L3 LINE CR1 -6 1571 1497 447 304 57 19 chrX 61400921 61401079 -101198851 - MIR3 SINE MIR -11 197 34 1561 209 136 34 chrX 61401433 61402009 -101197921 + MLT1E2 LTR MaLR 1 626 0 400 361 91 50 chrX 61402334 61402954 -101196976 - L2 LINE L2 -1 3271 2626 286 329 24 0 chrX 61403103 61403188 -101196742 - MIR SINE MIR -171 91 5 447 19 0 0 chrX 61403317 61403369 -101196561 + (TG)n Simple_repeat Simple_repeat 1 52 0 247 236 0 36 chrX 61403754 61403809 -101196121 + MER5A DNA MER1_type 57 109 -80 412 315 108 0 chrX 61405037 61405167 -101194763 - L2 LINE L2 -4 3268 3125 1338 128 80 0 chrX 61405442 61405691 -101194239 - L1MA7 LINE L1 -6 6285 6017 2314 96 7 0 chrX 61406144 61406446 -101193484 - AluSp SINE Alu -9 304 1 263 263 22 123 chrX 61406473 61406652 -101193278 + MIR SINE MIR 46 206 -56 243 241 0 17 chrX 61406713 61406771 -101193159 + MIR SINE MIR 156 212 -50 23 33 0 0 chrX 61407981 61408011 -101191919 + AT_rich Low_complexity Low_complexity 1 30 0 635 260 0 0 chrX 61408050 61408219 -101191711 - MER3 DNA MER1_type -87 122 1 545 298 44 29 chrX 61408230 61408613 -101191317 - L1ME LINE L1 -335 5786 5398 387 280 51 63 chrX 61409591 61409941 -101189989 - L1MC4a LINE L1 -86 6035 5688 803 238 23 28 chrX 61409946 61410160 -101189770 + MIR SINE MIR 2 214 -48 252 291 12 62 chrX 61410348 61410592 -101189338 - L1MC4a LINE L1 -2323 5485 5254 422 249 28 132 chrX 61410800 61411013 -101188917 - MIR3 SINE MIR -8 200 10 2743 261 47 60 chrX 61411736 61412669 -101187261 + L1M4b LINE L1 11 931 -5928 280 114 0 0 chrX 61413376 61413420 -101186510 - MER96B DNA MER1_type? -184 233 190 21 0 0 0 chrX 61413491 61413512 -101186418 + AT_rich Low_complexity Low_complexity 1 21 0 2083 230 55 30 chrX 61413642 61414748 -101185182 + L1M4b LINE L1 1232 2390 -4569 309 282 30 23 chrX 61415120 61415251 -101184679 + L1M4b LINE L1 2647 2778 -4181 2931 63 3 5 chrX 61415321 61415702 -101184228 - L1PA7 LINE L1 -6 6148 5769 373 264 39 54 chrX 61415837 61415966 -101183964 - L2 LINE L2 0 3313 3187 315 237 21 31 chrX 61416240 61416337 -101183593 + MIR SINE MIR 97 192 -70 354 278 142 33 chrX 61416343 61416555 -101183375 + L2 LINE L2 3079 3313 0 383 273 36 18 chrX 61416816 61416926 -101183004 - MIR SINE MIR -67 141 30 210 272 214 39 chrX 61417255 61417461 -101182469 + L3b LINE CR1 1255 1496 -87 186 314 13 92 chrX 61417781 61418010 -101181920 - L2 LINE L2 -190 3082 2872 312 331 26 60 chrX 61418115 61418266 -101181664 + MER5A DNA MER1_type 44 189 0 248 313 42 42 chrX 61418268 61418434 -101181496 - L2 LINE L2 -551 2763 2598 189 0 0 0 chrX 61418450 61418471 -101181459 + (TG)n Simple_repeat Simple_repeat 2 22 0 623 320 44 4 chrX 61418661 61418886 -101181044 + MIR SINE MIR 29 262 0 437 290 104 32 chrX 61419580 61419801 -101180129 - MIR SINE MIR -6 256 20 208 167 71 0 chrX 61419834 61419876 -101180054 + MIR SINE MIR 101 145 -117 295 222 44 44 chrX 61419931 61420021 -101179909 + L2 LINE L2 3209 3298 -15 332 295 49 25 chrX 61420256 61420378 -101179552 + MIR3 SINE MIR 34 158 -50 558 253 11 79 chrX 61420381 61420452 -101179478 + MER5B DNA MER1_type 2 76 -102 180 77 0 0 chrX 61420452 61420478 -101179452 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2821 63 8 0 chrX 61420480 61420845 -101179085 - L1PA7 LINE L1 0 6154 5787 558 253 11 79 chrX 61420845 61420960 -101178970 + MER5B DNA MER1_type 77 178 0 184 219 24 0 chrX 61420960 61420999 -101178931 + MIR3 SINE MIR 153 192 -16 367 306 10 10 chrX 61421016 61421114 -101178816 + MIR SINE MIR 5 102 -160 232 366 62 18 chrX 61421975 61422087 -101177843 + L2 LINE L2 3107 3223 -49 224 220 0 0 chrX 61422099 61422149 -101177781 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 568 225 0 0 chrX 61422293 61422422 -101177508 + L1MB7 LINE L1 33 161 -6381 3547 234 124 36 chrX 61422426 61422975 -101176955 + L1MB7 LINE L1 3281 3780 -2864 1715 162 138 21 chrX 61422975 61423358 -101176572 - MSTA LTR MaLR 0 428 1 3547 234 124 36 chrX 61423358 61424262 -101175668 + L1MB7 LINE L1 3780 4862 -1782 1323 238 15 20 chrX 61424362 61424761 -101175169 + L1MB7 LINE L1 5233 5629 -1015 2658 102 24 69 chrX 61424796 61425306 -101174624 - L1MA3 LINE L1 -5 6300 5814 1321 77 12 0 chrX 61425306 61425474 -101174456 - AluY SINE Alu -12 299 130 228 35 0 0 chrX 61425474 61425503 -101174427 + (TA)n Simple_repeat Simple_repeat 2 30 0 40479 37 21 2 chrX 61425503 61431525 -101168405 - L1PA3 LINE L1 -9 6146 7 3544 156 82 37 chrX 61431524 61431995 -101167935 + L1MB7 LINE L1 5618 6067 -615 * 2592 109 19 0 chrX 61431995 61432370 -101167560 - L1PA15 LINE L1 -5 6160 5779 3544 156 82 37 chrX 61432370 61432911 -101167019 + L1MB7 LINE L1 6067 6665 -17 420 294 56 25 chrX 61432975 61433135 -101166795 + MIR SINE MIR 2 166 -96 399 304 130 10 chrX 61433201 61433428 -101166502 - MIR SINE MIR 0 262 10 212 231 0 0 chrX 61433851 61433890 -101166040 + polypyrimidine Low_complexity Low_complexity 1 39 0 526 261 86 31 chrX 61434032 61434254 -101165676 - MIR SINE MIR -6 256 23 186 43 0 0 chrX 61434444 61434467 -101165463 + (GA)n Simple_repeat Simple_repeat 2 24 0 596 218 0 24 chrX 61434961 61435085 -101164845 + L2 LINE L2 3178 3298 -15 587 267 101 14 chrX 61435242 61435538 -101164392 - L1ME3 LINE L1 -215 5947 5626 653 133 11 133 chrX 61435967 61436043 -101163887 - L1MB1 LINE L1 -6 6162 6121 4009 26 0 0 chrX 61436043 61436512 -101163418 - L1PA4 LINE L1 -3 6152 5684 653 133 11 133 chrX 61436512 61436623 -101163307 - L1MB1 LINE L1 -47 6121 5998 14659 91 10 4 chrX 61436689 61439601 -101160329 - L1PA7 LINE L1 0 6154 3229 210 118 0 0 chrX 61439653 61439687 -101160243 + (CAT)n Simple_repeat Simple_repeat 1 34 0 384 310 54 23 chrX 61439799 61439928 -101160002 + L2 LINE L2 3116 3248 -24 830 223 73 43 chrX 61439985 61440218 -101159712 + MIR SINE MIR 13 252 -10 217 287 41 66 chrX 61441568 61441690 -101158240 - MIR SINE MIR -44 218 100 216 67 0 0 chrX 61444590 61444620 -101155310 + (CA)n Simple_repeat Simple_repeat 2 31 0 419 270 24 40 chrX 61445711 61445837 -101154093 + MIR3 SINE MIR 79 202 -6 196 301 98 28 chrX 61446007 61446150 -101153780 + MIR SINE MIR 49 201 -61 1710 174 47 3 chrX 61446757 61447079 -101152851 - MER58B DNA MER1_type -1 340 5 6948 61 0 0 chrX 61447925 61449001 -101150929 - L1PA7 LINE L1 -3 6151 5077 2561 82 3 0 chrX 61449001 61449377 -101150553 + L1P LINE L1 4385 4761 -1385 230 311 14 27 chrX 61449971 61450045 -101149885 - L2 LINE L2 0 3272 3200 2041 90 0 42 chrX 61450090 61450378 -101149552 - AluSg SINE Alu -18 292 17 271 306 153 24 chrX 61450478 61450602 -101149328 - MIR3 SINE MIR -60 148 9 375 275 42 42 chrX 61451505 61451625 -101148305 - MIR3 SINE MIR -29 179 60 484 188 0 0 chrX 61452271 61452351 -101147579 - MIR SINE MIR -114 148 69 464 301 0 36 chrX 61452454 61452647 -101147283 - L2 LINE L2 -210 3062 2877 283 401 8 8 chrX 61452804 61452936 -101146994 + MIR3 SINE MIR 41 172 -36 387 40 0 0 chrX 61452939 61452989 -101146941 + L1PA6 LINE L1 6099 6148 -6 30 59 0 0 chrX 61452989 61453040 -101146890 + AT_rich Low_complexity Low_complexity 1 51 0 265 283 210 22 chrX 61453118 61453256 -101146674 + MIR SINE MIR 35 198 -64 315 342 37 19 chrX 61454684 61454845 -101145085 + MIR SINE MIR 58 221 -41 202 250 0 0 chrX 61455535 61455579 -101144351 + (TAA)n Simple_repeat Simple_repeat 1 44 0 484 215 118 44 chrX 61455589 61455724 -101144206 - MIR SINE MIR -15 247 103 258 277 62 54 chrX 61455742 61455872 -101144058 - L2 LINE L2 0 3272 3142 197 368 21 32 chrX 61455873 61455968 -101143962 - L2 LINE L2 -36 3236 3143 245 318 66 80 chrX 61456296 61456585 -101143345 + L2 LINE L2 2891 3175 -97 1046 174 6 0 chrX 61457498 61457670 -101142260 - FAM SINE Alu -1 174 2 21888 52 7 0 chrX 61458270 61464300 -101135630 - L1PA4 LINE L1 -2 6153 13 13218 170 18 9 chrX 61464968 61468932 -101130998 - L1MA3 LINE L1 0 7724 3721 186 66 49 49 chrX 61469038 61469099 -101130831 + (TA)n Simple_repeat Simple_repeat 1 61 0 629 151 25 0 chrX 61469101 61469220 -101130710 + L1PB2 LINE L1 6023 6144 -7 56 39 0 0 chrX 61469220 61469297 -101130633 + AT_rich Low_complexity Low_complexity 1 77 0 379 131 57 90 chrX 61469297 61469419 -101130511 + L1 LINE L1 2233 2350 -3796 229 113 28 56 chrX 61469434 61469505 -101130425 + (TA)n Simple_repeat Simple_repeat 2 70 0 7027 47 5 1 chrX 61469505 61470899 -101129031 - L1PA7 LINE L1 -15 6139 4746 477 110 14 0 chrX 61470901 61470974 -101128956 - L1PA7 LINE L1 -2042 4104 4031 1091 119 5 26 chrX 61470974 61471168 -101128762 - L1PB2 LINE L1 -117 6034 5845 20695 138 26 23 chrX 61471168 61474774 -101125156 - L1MA3 LINE L1 -3932 3633 17 298 296 12 0 chrX 61474845 61474926 -101125004 + MIR SINE MIR 70 151 -111 23 0 0 0 chrX 61475051 61475074 -101124856 + AT_rich Low_complexity Low_complexity 1 23 0 693 263 20 50 chrX 61476554 61476752 -101123178 + MIR3 SINE MIR 1 192 -16 23 33 0 0 chrX 61476763 61476793 -101123137 + AT_rich Low_complexity Low_complexity 1 30 0 506 231 66 79 chrX 61476851 61477032 -101122898 + MIR3 SINE MIR 20 186 -22 1351 130 0 54 chrX 61477240 61477416 -101122514 - L1MA9 LINE L1 -364 5948 5789 1304 149 0 0 chrX 61477416 61477631 -101122299 - L1PA15 LINE L1 0 6165 5951 1351 130 0 54 chrX 61477631 61477715 -101122215 - L1MA9 LINE L1 -523 5789 5702 1916 126 14 31 chrX 61477715 61478070 -101121860 + L1MA7 LINE L1 5936 6287 -4 537 250 119 4 chrX 61478244 61478496 -101121434 - L1ME LINE L1 -306 5815 5535 261 291 107 27 chrX 61478557 61479456 -101120474 - L1ME LINE L1 -740 5430 4438 269 360 54 7 chrX 61480380 61480527 -101119403 + MIR3 SINE MIR 49 202 -6 336 248 15 102 chrX 61480615 61480752 -101119178 + L3 LINE CR1 1452 1576 -1 1428 142 138 14 chrX 61480796 61481092 -101118838 + L1 LINE L1 3806 4138 -2008 24 0 0 0 chrX 61481170 61481194 -101118736 + AT_rich Low_complexity Low_complexity 1 24 0 1816 144 7 27 chrX 61481194 61481486 -101118444 - AluJb SINE Alu -26 286 1 592 292 64 12 chrX 61482345 61482516 -101117414 - MIR3 SINE MIR -15 193 14 252 237 11 129 chrX 61482519 61482612 -101117318 + L2 LINE L2 3175 3256 -16 249 200 20 0 chrX 61483293 61483343 -101116587 + L2 LINE L2 3251 3301 -12 186 133 0 0 chrX 61483480 61483510 -101116420 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 311 259 24 12 chrX 61484081 61484166 -101115764 - L2 LINE L2 -1 3271 3186 228 250 19 0 chrX 61485030 61485082 -101114848 + CT-rich Low_complexity Low_complexity 3 55 0 229 271 42 0 chrX 61487044 61487092 -101112838 - L2 LINE L2 -17 3255 3206 325 308 242 11 chrX 61487163 61487345 -101112585 + MIR SINE MIR 31 254 -8 364 289 74 8 chrX 61487933 61488054 -101111876 + MIR3 SINE MIR 76 204 -4 241 306 0 12 chrX 61489427 61489512 -101110418 + (TCCA)n Simple_repeat Simple_repeat 3 86 0 474 221 39 19 chrX 61489513 61489617 -101110313 - L2 LINE L2 0 3313 3208 243 322 61 78 chrX 61489659 61489839 -101110091 - L2 LINE L2 -254 3018 2842 404 296 25 0 chrX 61490286 61490445 -101109485 - MER103 DNA DNA -2 164 2 497 311 25 25 chrX 61491404 61491600 -101108330 + MIR SINE MIR 5 200 -62 24 0 0 0 chrX 61492353 61492377 -101107553 + AT_rich Low_complexity Low_complexity 1 24 0 187 77 0 0 chrX 61493800 61493826 -101106104 + MIR SINE MIR 158 183 -79 306 7 0 0 chrX 61494634 61494757 -101105173 + (CA)n Simple_repeat Simple_repeat 1 148 0 198 103 0 0 chrX 61495028 61495057 -101104873 + (T)n Simple_repeat Simple_repeat 1 29 0 445 216 40 91 chrX 61495754 61495930 -101104000 + MIR3 SINE MIR 19 185 -23 320 192 41 14 chrX 61496289 61496362 -101103568 - MIR SINE MIR -43 219 145 389 254 9 35 chrX 61496567 61496681 -101103249 - MIR SINE MIR -70 192 82 874 222 11 11 chrX 61496866 61497051 -101102879 - MIR SINE MIR -74 188 4 183 286 29 29 chrX 61497051 61497111 -101102819 - MIR SINE MIR -73 135 76 248 211 56 14 chrX 61497221 61497292 -101102638 + Charlie8 DNA MER1_type 1 74 -2343 235 242 32 0 chrX 61497370 61497432 -101102498 + Charlie8 DNA MER1_type 2349 2412 -5 567 320 17 6 chrX 61497805 61497980 -101101950 - MIR SINE MIR -70 192 16 2647 223 54 2 chrX 61498006 61498599 -101101331 - MLT1E3 LTR MaLR 0 624 1 709 184 12 30 chrX 61499931 61500099 -101099831 + MER3 DNA MER1_type 1 165 -44 294 147 27 53 chrX 61500117 61500192 -101099738 + MER3 DNA MER1_type 136 208 -1 255 170 0 21 chrX 61500154 61500201 -101099729 - MER3 DNA MER1_type -124 85 40 * 389 250 184 7 chrX 61500261 61500397 -101099533 + MIR3 SINE MIR 16 175 -33 381 43 0 0 chrX 61500570 61500617 -101099313 + (CA)n Simple_repeat Simple_repeat 1 47 0 209 227 0 0 chrX 61500666 61500710 -101099220 + MIR3 SINE MIR 150 193 -15 300 184 61 71 chrX 61501006 61501104 -101098826 + MIR SINE MIR 113 209 -53 1850 169 23 0 chrX 61501697 61501999 -101097931 + AluJo SINE Alu 1 309 -3 31748 59 2 2 chrX 61502536 61508671 -101091259 - L1PA5 LINE L1 0 6154 13 191 313 12 48 chrX 61508764 61508847 -101091083 - L3 LINE CR1 0 1577 1498 384 111 0 0 chrX 61508933 61508996 -101090934 + (TG)n Simple_repeat Simple_repeat 2 64 0 219 114 0 0 chrX 61508998 61509033 -101090897 + (GA)n Simple_repeat Simple_repeat 2 36 0 1599 185 0 41 chrX 61509213 61509527 -101090403 - AluJo SINE Alu -11 301 1 344 329 21 21 chrX 61510624 61510767 -101089163 - MIR SINE MIR -11 251 109 438 267 103 8 chrX 61511018 61511147 -101088783 + MIR SINE MIR 1 143 -65 182 313 75 15 chrX 61511308 61511375 -101088555 - L3 LINE CR1 -126 1451 1381 411 306 82 24 chrX 61511775 61511968 -101087962 - MIR SINE MIR -56 206 3 460 278 108 28 chrX 61512422 61512598 -101087332 - MIR SINE MIR -56 206 17 180 259 69 17 chrX 61512959 61513017 -101086913 + MIR SINE MIR 196 256 -6 649 263 48 38 chrX 61513019 61513272 -101086658 + MIR SINE MIR 7 262 0 549 296 9 15 chrX 61514493 61514694 -101085236 + MIR3 SINE MIR 10 209 -53 180 206 103 88 chrX 61514921 61514989 -101084941 - MIR3 SINE MIR -21 187 119 638 304 36 98 chrX 61514999 61515440 -101084490 - L2 LINE L2 -3 3269 2856 963 228 10 5 chrX 61515767 61515973 -101083957 + MIR SINE MIR 13 219 -43 242 93 70 0 chrX 61515979 61516022 -101083908 + L1MA2 LINE L1 6256 6301 -3 498 319 36 34 chrX 61516896 61517133 -101082797 - MIR SINE MIR -5 257 17 330 322 116 35 chrX 61517278 61517477 -101082453 + MIR SINE MIR 24 238 -24 1689 136 0 12 chrX 61517531 61517782 -101082148 - AluSg SINE Alu -18 292 45 333 241 60 17 chrX 61518585 61518701 -101081229 - MER20B DNA MER1_type -654 129 9 360 176 22 66 chrX 61518897 61518988 -101080942 + MIR SINE MIR 78 164 -98 299 178 0 0 chrX 61518994 61519039 -101080891 - L2 LINE L2 -18 3254 3210 238 319 18 35 chrX 61519087 61519256 -101080674 + CT-rich Low_complexity Low_complexity 1 166 0 270 0 0 0 chrX 61519774 61519804 -101080126 + (CA)n Simple_repeat Simple_repeat 2 31 0 335 329 75 0 chrX 61520042 61520188 -101079742 + L3b LINE CR1 1316 1472 -111 237 83 0 0 chrX 61520546 61520582 -101079348 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 568 136 12 0 chrX 61522229 61522310 -101077620 - AluS SINE Alu -231 82 1 435 243 44 63 chrX 61522312 61522518 -101077412 + L1PA16 LINE L1 1809 2010 -4839 44728 40 1 0 chrX 61522519 61528615 -101071315 + L1PA4 LINE L1 55 6155 0 1362 207 56 14 chrX 61528609 61528966 -101070964 + L1PA16 LINE L1 1955 2326 -4523 * 949 173 93 17 chrX 61529208 61529555 -101070375 + L1PA16 LINE L1 5808 6178 -691 27480 31 0 0 chrX 61529581 61533482 -101066448 - L1PA3 LINE L1 0 6155 2268 10710 58 10 5 chrX 61533482 61534838 -101065092 + L1P LINE L1 675 2036 -4110 3005 165 9 28 chrX 61534834 61535373 -101064557 + L1PA16 LINE L1 6167 6695 -174 * 1005 144 48 5 chrX 61535473 61535661 -101064269 - MLT1A1-int LTR MaLR -1539 196 1 1031 231 9 13 chrX 61535661 61535886 -101064044 - MLT1A1 LTR MaLR 0 365 142 21647 104 7 0 chrX 61535886 61539788 -101060142 - L1PA8A LINE L1 -9 6122 2195 2170 122 0 0 chrX 61539797 61540093 -101059837 - AluSc SINE Alu -13 296 1 635 222 26 26 chrX 61540096 61540249 -101059681 - MLT1A1 LTR MaLR -212 153 1 507 186 0 59 chrX 61540249 61540349 -101059581 - MLT1A2 LTR MaLR -280 94 1 206 229 83 0 chrX 61540501 61540568 -101059362 - MIR SINE MIR -76 186 113 421 273 124 25 chrX 61541033 61541194 -101058736 + MIR3 SINE MIR 17 193 -15 266 372 50 0 chrX 61541719 61541840 -101058090 + L2 LINE L2 2933 3059 -213 1879 289 64 59 chrX 61542080 61543597 -101056333 + L1MEd LINE L1 3 1568 -4742 1032 277 47 29 chrX 61543909 61544396 -101055534 + L1MEd LINE L1 2226 2721 -3408 4483 203 20 15 chrX 61544447 61546237 -101053693 - L1MB8 LINE L1 0 6178 4378 1030 231 40 72 chrX 61546237 61546614 -101053316 - L1MC5 LINE L1 -537 7424 7060 203 152 0 0 chrX 61546934 61546967 -101052963 - L2 LINE L2 -4 3309 3277 189 256 64 39 chrX 61546969 61547047 -101052883 - L2 LINE L2 -1366 1948 1869 2313 89 0 0 chrX 61547173 61547465 -101052465 + AluSq SINE Alu 1 292 -21 21 71 0 0 chrX 61547479 61547521 -101052409 + AT_rich Low_complexity Low_complexity 1 42 0 326 291 165 47 chrX 61548438 61548778 -101051152 - HAL1 LINE L1 -1223 1284 905 312 314 61 82 chrX 61548905 61549150 -101050780 - MIR SINE MIR -5 257 18 344 308 77 19 chrX 61551101 61551257 -101048673 + MIR SINE MIR 45 209 -53 470 321 122 5 chrX 61551860 61552081 -101047849 - MIR SINE MIR -7 255 9 207 211 237 0 chrX 61553613 61553689 -101046241 + MIR SINE MIR 38 131 -77 379 161 76 0 chrX 61554149 61554267 -101045663 + (CCTA)n Simple_repeat Simple_repeat 1 127 0 1483 228 22 12 chrX 61554796 61555334 -101044596 - MER119 DNA MER1_type 0 583 7 1735 272 24 12 chrX 61555588 61556088 -101043842 + L1ME3A LINE L1 5451 5956 -214 741 232 85 11 chrX 61556142 61556319 -101043611 + MER21B LTR ERV1 328 517 -346 368 320 69 44 chrX 61556435 61556638 -101043292 + L1MDa LINE L1 485 692 -5848 1702 202 71 20 chrX 61556809 61557319 -101042611 + L1MDa LINE L1 1021 1556 -4987 1267 28 0 0 chrX 61557358 61557503 -101042427 - L1P2 LINE L1 -371 5783 5639 348 94 0 0 chrX 61557503 61557556 -101042374 + L1PA6 LINE L1 6102 6154 0 2440 243 55 7 chrX 61557557 61558646 -101041284 + L1MDa LINE L1 1865 2998 -3542 4754 168 45 31 chrX 61558700 61559664 -101040266 + L1MD1 LINE L1 5266 6242 0 327 285 57 78 chrX 61559695 61559888 -101040042 + L1ME3A LINE L1 5967 6155 -15 366 283 26 26 chrX 61559898 61560011 -101039919 + L2 LINE L2 2694 2806 -508 354 246 82 57 chrX 61561125 61561247 -101038683 + L2 LINE L2 3185 3309 -4 321 296 113 7 chrX 61561332 61561474 -101038456 + MIR SINE MIR 47 203 -59 321 319 9 17 chrX 61561878 61561994 -101037936 + MER117 DNA MER1_type 81 195 -2 219 278 14 14 chrX 61562433 61562505 -101037425 + CT-rich Low_complexity Low_complexity 3 74 0 186 189 0 0 chrX 61562870 61562907 -101037023 + (CA)n Simple_repeat Simple_repeat 2 38 0 821 249 51 5 chrX 61563235 61563452 -101036478 + MIR SINE MIR 36 262 0 626 68 11 0 chrX 61563659 61563747 -101036183 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 263 351 63 0 chrX 61563770 61563881 -101036049 - L2 LINE L2 -16 3297 3180 312 225 62 0 chrX 61564016 61564096 -101035834 - LTR33 LTR ERVL -436 85 1 272 338 40 36 chrX 61564096 61564321 -101035609 - L2 LINE L2 -939 2375 2150 350 314 25 17 chrX 61565732 61565850 -101034080 + MIR3 SINE MIR 38 156 -52 641 234 78 6 chrX 61566053 61566220 -101033710 - MER112 DNA MER1_type -1 259 81 220 271 0 34 chrX 61566247 61566306 -101033624 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 320 254 0 0 chrX 61566317 61566384 -101033546 - MER112 DNA MER1_type -193 67 1 8096 29 3 8 chrX 61567438 61569124 -101030806 - L1PA3 LINE L1 -3 6152 4473 201 129 0 0 chrX 61569253 61569284 -101030646 + (TC)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chrX 61569285 61569305 -101030625 + (CA)n Simple_repeat Simple_repeat 2 21 0 237 21 21 62 chrX 61570023 61570071 -101029859 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 255 146 0 0 chrX 61570109 61570164 -101029766 + (CATA)n Simple_repeat Simple_repeat 2 56 0 369 0 0 0 chrX 61574339 61574380 -101025550 + (TA)n Simple_repeat Simple_repeat 1 41 0 180 256 116 0 chrX 61577548 61577591 -101022339 - MIR SINE MIR -159 103 56 * 364 275 85 28 chrX 61577566 61577722 -101022208 + MIR3 SINE MIR 34 199 -9 731 181 94 0 chrX 61578052 61578190 -101021740 + FRAM SINE Alu 26 176 0 196 310 56 0 chrX 61578299 61578370 -101021560 + L2 LINE L2 3152 3226 -46 209 216 20 20 chrX 61578397 61578448 -101021482 - L2 LINE L2 -8 3305 3255 685 123 58 91 chrX 61578575 61578729 -101021201 + MER104 DNA Tc2 32 180 0 330 253 13 13 chrX 61578765 61578844 -101021086 - MIR SINE MIR -121 141 63 1655 146 38 25 chrX 61578998 61579314 -101020616 - MER33 DNA MER1_type -4 320 1 236 200 0 43 chrX 61579508 61579578 -101020352 - L1MC5 LINE L1 -39 7922 7856 445 268 72 7 chrX 61579849 61580002 -101019928 + MIR SINE MIR 85 247 -15 498 312 35 25 chrX 61580027 61580229 -101019701 - L3 LINE CR1 -518 1059 856 251 319 69 0 chrX 61580439 61580555 -101019375 + L2 LINE L2 2623 2746 -568 2023 150 0 0 chrX 61580557 61580885 -101019045 + AluSx SINE Alu 1 328 0 1147 257 49 43 chrX 61580957 61581474 -101018456 + L2 LINE L2 2729 3255 -58 255 281 34 84 chrX 61581840 61582018 -101017912 - L3 LINE CR1 -854 723 555 220 294 78 39 chrX 61582259 61582361 -101017569 + L2 LINE L2 3208 3313 0 307 331 41 0 chrX 61582722 61582843 -101017087 + L2 LINE L2 3188 3313 0 314 156 47 16 chrX 61582970 61583034 -101016896 + MER20 DNA MER1_type 1 66 -153 827 250 0 28 chrX 61583036 61583216 -101016714 - FAM SINE Alu 0 175 1 17932 217 20 22 chrX 61583260 61586375 -101013555 + L1PA14 LINE L1 608 3423 -4161 2268 83 10 0 chrX 61586375 61586665 -101013265 + AluY SINE Alu 13 305 -6 17932 217 20 22 chrX 61586665 61589979 -101009951 + L1PA14 LINE L1 3423 6744 -840 966 159 0 0 chrX 61589979 61590124 -101009806 + AluSg/x SINE Alu 158 302 -10 225 0 0 0 chrX 61590135 61590160 -101009770 + (GGA)n Simple_repeat Simple_repeat 3 27 0 679 170 18 0 chrX 61590290 61590402 -101009528 + AluSg/x SINE Alu 186 299 -10 288 0 0 0 chrX 61590402 61590434 -101009496 + (GGA)n Simple_repeat Simple_repeat 1 32 0 4765 154 19 1 chrX 61590434 61591227 -101008703 + L1PA14 LINE L1 6793 7599 0 180 0 0 0 chrX 61591352 61591372 -101008558 + (CA)n Simple_repeat Simple_repeat 2 21 0 1582 316 74 29 chrX 61592132 61592601 -101007329 + L3 LINE CR1 707 1153 -424 2310 174 92 0 chrX 61592601 61592991 -101006939 - MSTB LTR MaLR 0 426 1 1582 316 74 29 chrX 61592991 61593282 -101006648 + L3 LINE CR1 1153 1507 -70 608 0 14 0 chrX 61593282 61593354 -101006576 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 1582 316 74 29 chrX 61593354 61593393 -101006537 + L3 LINE CR1 1507 1543 -34 834 256 39 5 chrX 61594378 61594581 -101005349 - L2 LINE L2 0 3313 3104 271 219 125 47 chrX 61594972 61595100 -101004830 + MIR3 SINE MIR 58 195 -13 376 244 95 0 chrX 61595606 61595739 -101004191 + MIR SINE MIR 5 152 -56 188 200 44 0 chrX 61595866 61595911 -101004019 + MIR3 SINE MIR 160 206 -2 1974 100 82 0 chrX 61596771 61597052 -101002878 + AluSx SINE Alu 1 304 -8 805 263 76 99 chrX 61597121 61597543 -101002387 - MLT1L LTR MaLR 0 615 204 1284 258 90 42 chrX 61597592 61597915 -101002015 - MLT1J LTR MaLR -27 484 131 1633 79 9 22 chrX 61597915 61598142 -101001788 + AluSg/x SINE Alu 86 309 -1 1284 258 90 42 chrX 61598142 61598272 -101001658 - MLT1J LTR MaLR -380 131 9 279 242 16 0 chrX 61598278 61598340 -101001590 - MLT1L LTR MaLR -407 208 146 926 236 38 5 chrX 61598355 61598567 -101001363 + MER20 DNA MER1_type 1 219 0 183 333 30 30 chrX 61598600 61598699 -101001231 + L2 LINE L2 2359 2457 -857 584 323 51 23 chrX 61598700 61598917 -101001013 + L2 LINE L2 2719 2941 -373 563 242 167 29 chrX 61598936 61599176 -101000754 + MLT1H LTR MaLR 1 273 -276 266 309 45 72 chrX 61599376 61599641 -101000289 + L2 LINE L2 2626 2883 -431 229 239 15 60 chrX 61599964 61600031 -100999899 + L2 LINE L2 3246 3309 -4 283 254 34 0 chrX 61600300 61600359 -100999571 + MER91A DNA MER1_type 1 61 -79 303 273 10 20 chrX 61600748 61600847 -100999083 + MIR SINE MIR 49 146 -62 320 314 32 16 chrX 61600964 61601088 -100998842 + MIR3 SINE MIR 83 208 0 184 161 0 0 chrX 61601231 61601262 -100998668 + MER5A DNA MER1_type 65 95 -94 551 245 22 14 chrX 61601835 61601974 -100997956 - MIR3 SINE MIR -15 193 54 491 351 205 0 chrX 61602709 61602997 -100996933 - L2 LINE L2 0 3272 2926 759 207 152 18 chrX 61603006 61603223 -100996707 - MIR SINE MIR -3 259 14 535 242 110 110 chrX 61604154 61604609 -100995321 + MLT1J LTR MaLR 1 455 -56 21 71 0 0 chrX 61605578 61605620 -100994310 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 61605795 61605825 -100994105 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 61606108 61606137 -100993793 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chrX 61607713 61607755 -100992175 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 61607930 61607960 -100991970 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 61608245 61608274 -100991656 + AT_rich Low_complexity Low_complexity 1 29 0 1873 149 0 20 chrX 61608645 61608946 -100990984 + AluJo SINE Alu 1 295 -17 565 280 58 11 chrX 61610424 61610613 -100989317 - MIR SINE MIR -17 245 48 383 290 200 7 chrX 61610756 61610911 -100989019 - MIR3 SINE MIR -8 200 16 297 89 0 0 chrX 61611207 61611252 -100988678 + (TC)n Simple_repeat Simple_repeat 2 46 0 369 0 0 0 chrX 61611255 61611296 -100988634 + (CA)n Simple_repeat Simple_repeat 2 42 0 508 254 139 6 chrX 61611338 61611503 -100988427 + MIR SINE MIR 6 192 -70 314 271 45 6 chrX 61611792 61611950 -100987980 - MLT1L LTR MaLR -347 164 1 195 125 0 0 chrX 61612158 61612198 -100987732 + (A)n Simple_repeat Simple_repeat 1 40 0 5109 184 46 15 chrX 61612305 61613632 -100986298 + L1PB3 LINE L1 4124 5491 -663 1547 177 0 46 chrX 61613647 61613930 -100986000 + AluJo SINE Alu 16 285 -27 267 103 0 0 chrX 61613944 61613983 -100985947 + (TG)n Simple_repeat Simple_repeat 2 40 0 237 95 0 0 chrX 61613989 61614031 -100985899 - LTR66 LTR ERVL -171 439 398 29 21 0 21 chrX 61614031 61614059 -100985871 + AT_rich Low_complexity Low_complexity 1 29 -17 3796 136 10 31 chrX 61614059 61614734 -100985196 + L1PB3 LINE L1 5494 6154 0 29 21 0 21 chrX 61614734 61614752 -100985178 + AT_rich Low_complexity Low_complexity 29 46 0 209 345 34 59 chrX 61615184 61615303 -100984627 + MIR SINE MIR 31 146 -62 295 340 122 5 chrX 61615411 61615599 -100984331 - L2 LINE L2 0 3313 3104 4020 159 22 1 chrX 61615619 61616349 -100983581 + L1PA12 LINE L1 4624 5368 -778 2074 112 3 20 chrX 61616351 61616646 -100983284 + AluSc SINE Alu 1 290 -19 1900 9 0 0 chrX 61616654 61616867 -100983063 - L1P LINE L1 -1826 4320 4108 7322 39 1 0 chrX 61616867 61617818 -100982112 + L1PA5 LINE L1 5192 6143 -11 333 0 0 0 chrX 61617819 61617856 -100982074 + (TA)n Simple_repeat Simple_repeat 2 38 0 5772 77 25 4 chrX 61617856 61618649 -100981281 + L1PA12 LINE L1 5359 6168 0 395 289 16 33 chrX 61619015 61619136 -100980794 - MLT2E LTR ERVL -509 119 1 507 333 60 0 chrX 61619177 61619327 -100980603 + MER91A DNA MER1_type 1 159 -37 209 274 0 20 chrX 61619356 61619407 -100980523 + MER91A DNA MER1_type 124 173 -17 315 306 19 12 chrX 61619584 61619744 -100980186 + (ACTG)n Simple_repeat Simple_repeat 2 162 0 261 321 0 0 chrX 61619831 61619937 -100979993 + (ACTG)n Simple_repeat Simple_repeat 1 106 0 4143 45 0 2 chrX 61620881 61621386 -100978544 - L1PA5 LINE L1 -150 6004 5501 339 236 86 63 chrX 61622278 61622452 -100977478 - MIR3 SINE MIR -63 145 6 2007 200 13 3 chrX 61622541 61622921 -100977009 + L1MDa LINE L1 17 400 -6140 429 223 0 39 chrX 61622973 61623033 -100976897 + MLT1C LTR MaLR 369 425 -42 1947 183 0 6 chrX 61623033 61623382 -100976548 + MER7A DNA MER2_type 1 345 -1 429 223 0 39 chrX 61623382 61623424 -100976506 + MLT1C LTR MaLR 425 467 0 10793 188 48 13 chrX 61623424 61625445 -100974485 - ERVL LTR ERVL -1262 4502 2411 5594 213 85 73 chrX 61625448 61627211 -100972719 + L1MDa LINE L1 428 2167 -4373 180 0 0 0 chrX 61627211 61627231 -100972699 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 189 0 0 0 chrX 61627230 61627251 -100972679 + (GA)n Simple_repeat Simple_repeat 2 22 0 5594 213 85 73 chrX 61627231 61627639 -100972291 + L1MDa LINE L1 2167 2595 -3945 235 380 32 23 chrX 61627638 61627859 -100972071 + L1M4 LINE L1 205 427 -6319 * 553 219 0 7 chrX 61628067 61628218 -100971712 + L1M4 LINE L1 1530 1679 -5171 773 344 52 60 chrX 61628231 61628394 -100971536 + L1PA15-16 LINE L1 11 174 -6676 7243 105 7 21 chrX 61628394 61629480 -100970450 - MER11C LTR ERVK 0 1071 1 773 344 52 60 chrX 61629480 61630665 -100969265 + L1PA15-16 LINE L1 174 1262 -5588 1928 218 25 38 chrX 61630675 61631286 -100968644 + L1M4 LINE L1 1483 2085 -4764 216 0 0 0 chrX 61631829 61631853 -100968077 + (CAG)n Simple_repeat Simple_repeat 2 25 0 30 103 0 0 chrX 61632954 61633061 -100966869 + AT_rich Low_complexity Low_complexity 1 107 0 260 295 127 18 chrX 61633237 61633403 -100966527 + L2 LINE L2 2113 2296 -1018 1769 146 31 0 chrX 61633585 61633906 -100966024 + L1MA2 LINE L1 5974 6304 0 755 230 51 60 chrX 61633907 61633968 -100965962 + L1M4 LINE L1 2795 2855 -3993 497 31 0 0 chrX 61633968 61634032 -100965898 + L1PA3 LINE L1 6089 6152 -3 755 230 51 60 chrX 61634032 61634326 -100965604 + L1M4 LINE L1 2855 3091 -3757 1826 161 21 0 chrX 61634326 61634605 -100965325 + AluJb SINE Alu 1 285 -27 550 92 0 13 chrX 61634663 61634739 -100965191 + AluSg/x SINE Alu 217 291 -21 1533 265 91 0 chrX 61634758 61635244 -100964686 - L1M4 LINE L1 -3199 3649 3120 * 9142 209 26 29 chrX 61635242 61636986 -100962944 + L1M4 LINE L1 3630 5377 -1471 1520 81 40 0 chrX 61636986 61637209 -100962721 - L1PA13 LINE L1 -2 6161 5930 9142 209 26 29 chrX 61637209 61637467 -100962463 + L1M4 LINE L1 5377 5634 -1214 1988 127 0 7 chrX 61637467 61637775 -100962155 + AluSx SINE Alu 1 306 0 9142 209 26 29 chrX 61637775 61638149 -100961781 + L1M4 LINE L1 5634 6002 -846 368 250 65 0 chrX 61638152 61638244 -100961686 + L1MA2 LINE L1 15 112 -7453 620 106 0 0 chrX 61638245 61638330 -100961600 + L1M1 LINE L1 1432 1516 -6049 31014 108 21 13 chrX 61638331 61643553 -100956377 + L1PA7 LINE L1 1983 7247 -326 8800 28 5 0 chrX 61643553 61645367 -100954563 + L1PA4 LINE L1 4336 6152 -3 2048 103 66 0 chrX 61645373 61645693 -100954237 + L1PA7 LINE L1 7233 7573 0 13881 189 29 3 chrX 61645693 61648204 -100951726 + L1MA2 LINE L1 91 2667 -4898 6407 149 24 5 chrX 61648205 61650330 -100949600 + L1MA2 LINE L1 5566 7723 0 2185 119 3 0 chrX 61650650 61650944 -100948986 - AluSx SINE Alu -17 295 1 4333 132 49 63 chrX 61651546 61652431 -100947499 + L1PB4 LINE L1 5285 6156 0 2698 221 111 74 chrX 61652420 61652697 -100947233 + L1M4c LINE L1 1191 1456 -4926 * 25 31 0 0 chrX 61652697 61652729 -100947201 + AT_rich Low_complexity Low_complexity 1 32 0 419 36 0 0 chrX 61652710 61652766 -100947164 - L1PA3 LINE L1 0 6155 6100 2698 221 111 74 chrX 61652729 61652933 -100946997 + L1M4c LINE L1 1456 1651 -4731 210 37 0 0 chrX 61652933 61652960 -100946970 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2698 221 111 74 chrX 61652960 61653819 -100946111 + L1M4c LINE L1 1651 2559 -3823 * 5782 156 20 7 chrX 61653806 61655809 -100944121 + L1MA2 LINE L1 4147 6175 -129 1003 112 96 0 chrX 61655945 61656089 -100943841 + L1MA1 LINE L1 6108 6274 -28 312 91 0 0 chrX 61656089 61656133 -100943797 + (TA)n Simple_repeat Simple_repeat 2 45 0 1003 112 96 0 chrX 61656133 61656166 -100943764 + L1MA1 LINE L1 6274 6302 0 3022 251 30 10 chrX 61656174 61657302 -100942628 + L1M4c LINE L1 2523 3673 -2709 2545 237 1 24 chrX 61657304 61657424 -100942506 + L1M4c LINE L1 3733 3854 -2528 1956 206 39 7 chrX 61657424 61657837 -100942093 - MSTB LTR MaLR 0 426 1 2545 237 1 24 chrX 61657837 61658429 -100941501 + L1M4c LINE L1 3854 4429 -1953 2872 233 77 33 chrX 61658457 61658936 -100940994 - L1 LINE L1 -2289 3857 3400 1978 141 3 7 chrX 61658936 61659234 -100940696 - AluSx SINE Alu -15 297 1 2872 233 77 33 chrX 61659234 61659902 -100940028 - L1 LINE L1 -2746 3400 2660 939 256 233 10 chrX 61659904 61659972 -100939958 + L1M4c LINE L1 4448 4500 -1882 1106 221 65 60 chrX 61659972 61660356 -100939574 + MLT1B LTR MaLR 5 390 0 939 256 233 10 chrX 61660356 61660784 -100939146 + L1M4c LINE L1 4500 5055 -1327 202 329 61 12 chrX 61660852 61660934 -100938996 - MER91A DNA MER1_type -105 91 6 231 133 0 0 chrX 61661150 61661195 -100938735 + (T)n Simple_repeat Simple_repeat 1 45 0 7488 31 8 0 chrX 61661196 61662306 -100937624 - L1PA4 LINE L1 -2 6153 5041 870 18 0 0 chrX 61662308 61662417 -100937513 + L1PA4 LINE L1 4963 5071 -1075 1345 160 9 0 chrX 61662443 61662668 -100937262 + MER4A LTR ERV1 436 662 -2 231 194 48 0 chrX 61662669 61662731 -100937199 - L1M4 LINE L1 -2244 3902 3838 * 419 235 31 123 chrX 61662726 61663139 -100936791 - L1M4 LINE L1 -2900 3246 2872 2727 134 7 13 chrX 61663141 61663453 -100936477 + L1PA15 LINE L1 5714 6024 -141 3794 141 15 60 chrX 61663453 61664176 -100935754 + LTR8 LTR ERV1 1 691 0 2727 134 7 13 chrX 61664176 61664311 -100935619 + L1PA15 LINE L1 6024 6158 -7 450 207 67 50 chrX 61664318 61664497 -100935433 + L1MA9 LINE L1 6109 6290 -22 * 3372 163 21 8 chrX 61664491 61665149 -100934781 + L1P LINE L1 3284 3950 -2196 705 78 10 0 chrX 61665146 61665248 -100934682 + L1PA13 LINE L1 6041 6143 -20 * 32 0 0 0 chrX 61665250 61665282 -100934648 + AT_rich Low_complexity Low_complexity 1 32 0 1388 206 127 20 chrX 61665390 61665792 -100934138 - LTR49 LTR ERV1 -29 566 122 4165 181 42 28 chrX 61665893 61667571 -100932359 + L1MA2 LINE L1 2939 4649 -2916 7454 39 5 0 chrX 61667571 61668991 -100930939 - L1PA3 LINE L1 -3 6152 4730 4165 181 42 28 chrX 61668991 61669273 -100930657 + L1MA2 LINE L1 4649 4926 -2639 19675 36 0 6 chrX 61669277 61672500 -100927430 + L1PA3 LINE L1 2975 6155 0 2949 147 2 0 chrX 61672500 61673005 -100926925 + L1MA2 LINE L1 6751 7256 -467 2463 83 0 0 chrX 61673173 61673474 -100926456 - AluSx SINE Alu -11 301 1 1259 39 0 0 chrX 61673505 61673659 -100926271 - L1PA4 LINE L1 0 6155 6002 3192 127 19 51 chrX 61673822 61674406 -100925524 - MER34B LTR ERV1 0 565 1 2173 121 7 3 chrX 61674779 61675085 -100924845 - AluSx SINE Alu -5 307 1 239 215 15 0 chrX 61675272 61675337 -100924593 + CT-rich Low_complexity Low_complexity 1 66 0 207 0 0 0 chrX 61675502 61675525 -100924405 + (A)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chrX 61675860 61675888 -100924042 + AT_rich Low_complexity Low_complexity 1 28 0 1971 131 0 11 chrX 61675888 61676171 -100923759 - AluSx SINE Alu -32 280 1 455 132 226 57 chrX 61676204 61676363 -100923567 + MER53 DNA DNA 1 186 -3 236 333 10 52 chrX 61676376 61676472 -100923458 - L2 LINE L2 -497 2817 2726 474 258 53 67 chrX 61676496 61676721 -100923209 - MER110 LTR ERV1 -18 473 252 352 225 141 7 chrX 61676877 61677019 -100922911 - MER110A LTR ERV1 -283 185 25 526 239 19 25 chrX 61677075 61677234 -100922696 - MER119 DNA MER1_type -2 581 424 283 300 20 13 chrX 61677341 61677491 -100922439 - HAL1b LINE L1 -7 1341 1191 1331 219 151 31 chrX 61677521 61677669 -100922261 - MER31B LTR ERV1 0 466 337 1108 226 149 17 chrX 61677669 61678019 -100921911 + MSTD LTR MaLR 1 396 0 1331 219 151 31 chrX 61678019 61678286 -100921644 - MER31B LTR ERV1 -129 337 1 499 319 139 28 chrX 61678409 61679008 -100920922 + L1M4 LINE L1 4170 4834 -1312 2138 132 0 0 chrX 61679010 61679299 -100920631 + AluSx SINE Alu 1 289 -23 2804 121 21 7 chrX 61679807 61680229 -100919701 + MSTA LTR MaLR 1 428 0 4111 197 43 21 chrX 61680325 61680707 -100919223 - L1MB2 LINE L1 -2 6169 5797 273 119 0 0 chrX 61680707 61680749 -100919181 + (TA)n Simple_repeat Simple_repeat 1 42 0 4111 197 43 21 chrX 61680749 61680887 -100919043 - L1MB2 LINE L1 -374 5797 5664 905 77 77 8 chrX 61680887 61681017 -100918913 - MER85 DNA T2_type 0 139 1 4111 197 43 21 chrX 61681017 61681888 -100918042 - L1MB2 LINE L1 -507 5664 4745 303 221 15 0 chrX 61681889 61681957 -100917973 - MER92C LTR ERV1 -2 552 484 414 227 0 67 chrX 61682081 61682200 -100917730 - MER92C LTR ERV1 -443 111 1 2349 97 3 0 chrX 61682612 61682912 -100917018 - AluSx SINE Alu -11 301 1 1554 187 4 0 chrX 61682942 61683204 -100916726 + AluJo SINE Alu 1 263 -49 278 227 53 13 chrX 61683307 61683382 -100916548 + AluJb SINE Alu 59 136 -166 301 296 48 24 chrX 61683409 61683534 -100916396 - L1MEc LINE L1 -4121 2275 2148 2193 123 0 23 chrX 61683820 61684129 -100915801 - AluSx SINE Alu -10 302 1 369 75 0 0 chrX 61684203 61684256 -100915674 + (CA)n Simple_repeat Simple_repeat 2 54 0 1753 160 6 45 chrX 61684327 61684503 -100915427 - AluJo SINE Alu -11 301 141 180 0 0 0 chrX 61684503 61684523 -100915407 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1753 160 6 45 chrX 61684523 61684659 -100915271 - AluJo SINE Alu -171 141 1 22 35 0 0 chrX 61684706 61684735 -100915195 + AT_rich Low_complexity Low_complexity 1 29 0 248 306 8 74 chrX 61684872 61684959 -100914971 + MER5B DNA MER1_type 64 142 -36 2005 139 3 3 chrX 61684959 61685253 -100914677 - AluSx SINE Alu -17 295 2 248 306 8 74 chrX 61685253 61685286 -100914644 + MER5B DNA MER1_type 142 176 -2 214 283 0 0 chrX 61685287 61685340 -100914590 + MIR3 SINE MIR 152 204 -4 656 213 20 71 chrX 61685401 61685598 -100914332 + MER5A DNA MER1_type 3 189 0 243 0 0 0 chrX 61685898 61685925 -100914005 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2046 138 0 0 chrX 61685925 61686207 -100913723 - AluJb SINE Alu -30 282 1 22 0 0 0 chrX 61686216 61686238 -100913692 + AT_rich Low_complexity Low_complexity 1 22 0 1866 133 7 23 chrX 61686709 61687009 -100912921 + AluSx SINE Alu 7 301 -11 333 47 0 0 chrX 61687186 61687229 -100912701 + (TG)n Simple_repeat Simple_repeat 1 43 0 2283 95 7 0 chrX 61687242 61687546 -100912384 - AluSp SINE Alu -7 306 1 225 0 0 0 chrX 61687620 61687645 -100912285 + (TTA)n Simple_repeat Simple_repeat 2 26 0 589 165 110 9 chrX 61687645 61687754 -100912176 - FLAM_C SINE Alu -23 120 1 26 30 0 0 chrX 61687754 61687787 -100912143 + AT_rich Low_complexity Low_complexity 1 33 0 2126 116 0 7 chrX 61688828 61689147 -100910783 - AluSc SINE Alu 0 309 1 1931 162 3 0 chrX 61689149 61689451 -100910479 - AluSx SINE Alu -9 303 1 366 158 57 40 chrX 61689598 61689775 -100910155 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 366 228 41 12 chrX 61689750 61689921 -100910009 + (TA)n Simple_repeat Simple_repeat 2 177 0 376 191 43 7 chrX 61689957 61690098 -100909832 + (TA)n Simple_repeat Simple_repeat 2 147 0 745 183 0 16 chrX 61690256 61690382 -100909548 - FLAM_A SINE Alu -8 125 2 1991 221 48 50 chrX 61690428 61690504 -100909426 - MER67C LTR ERV1 0 710 635 2225 110 10 0 chrX 61690504 61690812 -100909118 + AluSx SINE Alu 1 311 -1 1991 221 48 50 chrX 61690812 61691422 -100908508 - MER67C LTR ERV1 -75 635 25 584 261 47 68 chrX 61691422 61691683 -100908247 - L1ME LINE L1 -378 5784 5519 2258 112 0 0 chrX 61691683 61691978 -100907952 + AluSq SINE Alu 1 295 -18 584 261 47 68 chrX 61691978 61692473 -100907457 - L1ME LINE L1 -643 5519 5023 2556 41 0 0 chrX 61692473 61692768 -100907162 + AluY SINE Alu 1 295 -16 2760 13 0 0 chrX 61692772 61693075 -100906855 + AluYb8 SINE Alu 1 303 -15 180 0 0 0 chrX 61693083 61693103 -100906827 + (T)n Simple_repeat Simple_repeat 1 20 0 6215 77 24 48 chrX 61693105 61695063 -100904867 - SVA Other Other -520 1386 4 343 212 0 45 chrX 61695080 61695212 -100904718 + GA-rich Low_complexity Low_complexity 1 126 0 402 115 0 35 chrX 61695213 61695300 -100904630 + (GGGAGA)n Simple_repeat Simple_repeat 1 84 0 802 287 79 40 chrX 61695305 61695841 -100904089 - L1ME LINE L1 -1097 5049 4535 1742 157 0 37 chrX 61695841 61696141 -100903789 - AluJo SINE Alu -23 289 1 802 287 79 40 chrX 61696141 61696254 -100903676 - L1ME LINE L1 -1611 4535 4428 1755 153 3 46 chrX 61696254 61696580 -100903350 - AluJb SINE Alu 0 312 1 802 287 79 40 chrX 61696580 61697216 -100902714 - L1ME LINE L1 -1718 4428 3681 937 286 26 42 chrX 61697225 61697603 -100902327 - L2 LINE L2 0 3313 2942 1998 209 30 61 chrX 61697686 61698089 -100901841 - L1MD2 LINE L1 -112 6230 5804 2067 156 0 0 chrX 61698089 61698396 -100901534 - AluSx SINE Alu -5 307 1 1998 209 30 61 chrX 61698396 61698627 -100901303 - L1MD2 LINE L1 -538 5804 5567 1708 178 4 4 chrX 61698629 61698936 -100900994 + AluJb SINE Alu 1 307 0 2060 106 51 17 chrX 61698968 61699260 -100900670 - AluSq SINE Alu -11 302 1 621 47 0 12 chrX 61699262 61699348 -100900582 - L1PB2 LINE L1 -180 5971 5887 573 108 0 0 chrX 61699366 61699449 -100900481 + MER21B-int LTR ERV1 4054 4136 -55 3856 194 48 10 chrX 61699541 61700351 -100899579 + MER21B LTR ERV1 1 841 -22 1189 240 35 53 chrX 61700370 61700545 -100899385 - L1MD2 LINE L1 -651 5574 5397 2211 104 3 0 chrX 61700545 61700833 -100899097 - AluSx SINE Alu -23 289 1 348 141 0 0 chrX 61700784 61700848 -100899082 - Alu SINE Alu -252 49 2 * 1189 240 35 53 chrX 61700848 61701138 -100898792 - L1MD2 LINE L1 -843 5382 5088 180 0 0 0 chrX 61701138 61701158 -100898772 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1756 171 0 3 chrX 61701160 61701447 -100898483 - AluJb SINE Alu -26 286 1 1189 240 35 53 chrX 61701447 61701724 -100898206 - L1MD2 LINE L1 -1138 5087 4832 3306 143 79 8 chrX 61701727 61702375 -100897555 + L1MC3 LINE L1 7085 7778 -7 257 146 0 0 chrX 61702389 61702430 -100897500 + Alu SINE Alu 1 41 -261 1230 246 36 17 chrX 61702445 61702921 -100897009 - L1MD2 LINE L1 -1467 4662 4178 284 122 0 0 chrX 61703006 61703047 -100896883 - Alu SINE Alu -260 41 1 332 220 70 0 chrX 61703059 61703159 -100896771 - L1MD2 LINE L1 -3226 2903 2797 313 221 0 29 chrX 61703159 61703227 -100896703 + T-rich Low_complexity Low_complexity 4 69 0 743 184 18 14 chrX 61703236 61703565 -100896365 + CT-rich Low_complexity Low_complexity 1 330 0 1805 182 0 3 chrX 61703571 61703884 -100896046 - AluJb SINE Alu 0 312 1 1524 236 41 24 chrX 61703884 61703990 -100895940 - L1MD2 LINE L1 -3317 2812 2709 1732 210 54 52 chrX 61703990 61704494 -100895436 + MLT1D LTR MaLR 1 505 0 1524 236 41 24 chrX 61704494 61704889 -100895041 - L1MD2 LINE L1 -3420 2709 2299 2679 221 89 120 chrX 61704930 61705654 -100894276 - L1 LINE L1 -1592 4554 3809 788 186 23 51 chrX 61705654 61705831 -100894099 - FRAM SINE Alu -5 171 1 2679 221 89 120 chrX 61705831 61705887 -100894043 - L1 LINE L1 -2337 3809 3753 2275 126 0 0 chrX 61705887 61706197 -100893733 - AluSx SINE Alu -2 310 1 2679 221 89 120 chrX 61706197 61706338 -100893592 - L1 LINE L1 -2393 3753 3609 2311 96 3 34 chrX 61706338 61706661 -100893269 - AluSq SINE Alu 0 313 1 2679 221 89 120 chrX 61706661 61706900 -100893030 - L1 LINE L1 -2537 3609 3364 5098 77 47 68 chrX 61706900 61707758 -100892172 - L1MA3 LINE L1 0 6305 5466 1539 224 7 0 chrX 61707762 61708077 -100891853 - AluJo SINE Alu 0 312 1 2679 221 89 120 chrX 61708077 61708504 -100891426 - L1 LINE L1 -2785 3361 2859 1645 155 47 37 chrX 61708504 61708800 -100891130 + AluJo SINE Alu 1 299 -13 2679 221 89 120 chrX 61708800 61709164 -100890766 - L1 LINE L1 -3287 2859 2485 2267 109 0 0 chrX 61709168 61709470 -100890460 + AluSx SINE Alu 1 302 -10 1366 171 3 87 chrX 61709594 61709928 -100890002 - AluJo SINE Alu -6 306 1 251 254 101 7 chrX 61709942 61710080 -100889850 - L1MD2 LINE L1 -4969 1150 1000 305 330 61 0 chrX 61710084 61710199 -100889731 - HAL1 LINE L1 -924 1583 1462 29 60 0 0 chrX 61710216 61710266 -100889664 + AT_rich Low_complexity Low_complexity 1 50 0 369 364 115 15 chrX 61710306 61710575 -100889355 - L1MD2 LINE L1 -5349 770 475 2883 209 25 12 chrX 61710727 61711368 -100888562 + MER82 DNA MER2_type 2 650 -3 1859 152 0 23 chrX 61711814 61712117 -100887813 + AluJo SINE Alu 1 296 -16 2050 146 0 13 chrX 61712280 61712595 -100887335 - AluSx SINE Alu -1 311 1 205 265 108 12 chrX 61712635 61712718 -100887212 - MIR SINE MIR -74 188 98 314 329 0 0 chrX 61712749 61712831 -100887099 - MIR SINE MIR -82 126 45 1899 140 0 45 chrX 61713427 61713741 -100886189 - AluSx SINE Alu -12 300 1 1750 194 0 3 chrX 61713877 61714170 -100885760 + AluJb SINE Alu 1 292 -20 234 290 41 85 chrX 61714555 61714848 -100885082 - LTR16C LTR ERVL 0 491 212 308 171 27 3 chrX 61714867 61714963 -100884967 - L1M4b LINE L1 -5232 1314 1213 2291 234 47 97 chrX 61714966 61715529 -100884401 - L1M4b LINE L1 -5435 1107 620 1444 186 58 18 chrX 61715529 61715803 -100884127 - AluJb SINE Alu -26 286 2 2291 234 47 97 chrX 61715803 61716301 -100883629 - L1M4b LINE L1 -5922 620 99 963 219 79 12 chrX 61716316 61716649 -100883281 + L1ME2 LINE L1 5219 5572 -594 3319 120 24 61 chrX 61716683 61717227 -100882703 - L1MA5 LINE L1 -4 6296 5779 2288 123 0 3 chrX 61717227 61717536 -100882394 - AluSq SINE Alu -5 308 1 3319 120 24 61 chrX 61717536 61717650 -100882280 - L1MA5 LINE L1 -521 5779 5662 1226 181 9 9 chrX 61717651 61717950 -100881980 - L1 LINE L1 -1474 4672 4371 1609 169 16 51 chrX 61717950 61718263 -100881667 - AluJo SINE Alu -7 305 4 1226 181 9 9 chrX 61718263 61718278 -100881652 - L1 LINE L1 -1774 4372 4358 2205 132 3 0 chrX 61718282 61718593 -100881337 - AluSx SINE Alu 0 312 1 985 254 18 0 chrX 61718667 61718950 -100880980 + L1ME2 LINE L1 5654 5941 -223 2326 114 0 0 chrX 61719430 61719737 -100880193 - AluSx SINE Alu -5 307 1 427 277 0 0 chrX 61720894 61720995 -100878935 - MER5A DNA MER1_type -80 109 9 223 276 40 13 chrX 61721334 61721410 -100878520 + MIR SINE MIR 20 97 -111 268 210 37 37 chrX 61722350 61722431 -100877499 + MIR SINE MIR 71 151 -111 857 254 32 5 chrX 61722518 61722735 -100877195 + MER58A DNA MER1_type 2 224 0 346 307 139 12 chrX 61722879 61723123 -100876807 - L1ME4a LINE L1 -21 6100 5826 441 200 12 12 chrX 61723148 61723233 -100876697 + L2 LINE L2 3227 3311 -2 270 228 41 24 chrX 61723234 61723357 -100876573 - L1ME4a LINE L1 -306 5815 5691 531 266 21 21 chrX 61723501 61723644 -100876286 + MIR SINE MIR 17 159 -103 661 174 0 33 chrX 61724101 61724222 -100875708 - FLAM_C SINE Alu -16 117 1 2099 114 34 3 chrX 61724228 61724526 -100875404 - AluSx SINE Alu -5 307 1 430 263 88 78 chrX 61725358 61725575 -100874355 + MIR SINE MIR 44 262 0 226 283 0 0 chrX 61725661 61725714 -100874216 - MIR3 SINE MIR -5 203 151 238 284 84 32 chrX 61725726 61725821 -100874109 + MER5B DNA MER1_type 17 116 -62 386 252 17 42 chrX 61726114 61726233 -100873697 - MIR SINE MIR -61 147 32 193 128 26 26 chrX 61726231 61726270 -100873660 - L2 LINE L2 0 3272 3234 * 2365 89 0 10 chrX 61726398 61726712 -100873218 - AluSx SINE Alu -1 311 1 322 341 14 51 chrX 61726804 61726942 -100872988 - L2 LINE L2 -82 3190 3058 551 197 91 15 chrX 61727022 61727154 -100872776 + MER96 DNA MER1_type? 6 147 -28 432 208 0 0 chrX 61728211 61728288 -100871642 + AluJ/FLAM SINE Alu 1 77 -235 302 179 13 39 chrX 61728288 61728366 -100871564 - MER31-int LTR ERV1 -1680 3256 3181 21 0 0 0 chrX 61728553 61728574 -100871356 + AT_rich Low_complexity Low_complexity 1 21 0 385 203 0 0 chrX 61728699 61728768 -100871162 + FRAM/FAM SINE Alu 1 69 -106 305 229 12 12 chrX 61729195 61729278 -100870652 - MER92C LTR ERV1 -452 102 20 212 325 38 38 chrX 61729780 61729860 -100870070 + MIR SINE MIR 18 97 -165 312 225 38 0 chrX 61730031 61730111 -100869819 - MIR SINE MIR -121 141 59 1404 189 33 56 chrX 61730111 61730273 -100869657 - AluJb SINE Alu -17 295 142 2291 122 0 0 chrX 61730273 61730584 -100869346 - AluSx SINE Alu -1 311 1 1404 189 33 56 chrX 61730584 61730723 -100869207 - AluJb SINE Alu -170 142 1 252 307 80 7 chrX 61731028 61731165 -100868765 - L1ME LINE L1 -302 5819 5673 361 196 45 75 chrX 61731196 61731329 -100868601 - FLAM_C SINE Alu 0 133 5 2294 107 0 3 chrX 61732110 61732418 -100867512 - AluSq SINE Alu -4 309 3 475 182 0 50 chrX 61732608 61732707 -100867223 + MIR3 SINE MIR 76 169 -39 983 261 6 52 chrX 61732982 61733312 -100866618 + L1M4 LINE L1 9 323 -6219 227 182 23 0 chrX 61733324 61733368 -100866562 + L1M4 LINE L1 382 426 -6116 285 140 0 183 chrX 61733442 61733535 -100866395 - AluJ/FLAM SINE Alu -222 80 5 21 0 0 0 chrX 61733547 61733568 -100866362 + AT_rich Low_complexity Low_complexity 1 21 0 836 174 13 19 chrX 61733576 61733891 -100866039 + CT-rich Low_complexity Low_complexity 1 313 0 1651 184 4 0 chrX 61733895 61734167 -100865763 - AluSx SINE Alu -39 273 1 3979 210 32 43 chrX 61734170 61735378 -100864552 + L1M4 LINE L1 450 1644 -4898 951 206 51 74 chrX 61735465 61735897 -100864033 + L1M4 LINE L1 3430 3851 -2793 523 277 14 14 chrX 61735902 61736043 -100863887 - MER8 DNA MER2_type -1 238 98 1198 166 36 4 chrX 61736085 61736338 -100863592 + L1MB7 LINE L1 5883 6143 -41 1064 165 6 0 chrX 61736340 61736522 -100863408 - MSTB1 LTR MaLR 0 432 250 452 134 0 0 chrX 61736526 61736593 -100863337 - MSTB1 LTR MaLR -362 70 4 403 346 16 8 chrX 61737176 61737321 -100862609 - MIR3 SINE MIR -24 184 39 4670 188 59 29 chrX 61738175 61740054 -100859876 - L1MC2 LINE L1 -19 6325 4396 309 242 11 88 chrX 61740091 61740182 -100859748 + MER5A DNA MER1_type 15 98 -91 379 284 65 0 chrX 61740450 61740585 -100859345 + MIR SINE MIR 35 176 -62 2023 137 19 3 chrX 61741490 61741797 -100858133 + AluJb SINE Alu 1 312 0 2273 103 0 0 chrX 61741995 61742297 -100857633 - AluSx SINE Alu -10 302 1 2128 109 0 3 chrX 61743084 61743393 -100856537 - AluSx SINE Alu 0 308 1 1632 227 81 45 chrX 61743425 61743480 -100856450 - MLT1H1 LTR MaLR -2 553 501 1953 155 21 27 chrX 61743480 61743816 -100856114 + MER1B DNA MER1_type 4 337 0 1632 227 81 45 chrX 61743816 61744294 -100855636 - MLT1H1 LTR MaLR -54 501 1 512 206 2 1 chrX 61746250 61746366 -100853564 + MLT1A2 LTR MaLR 255 383 -7 585 286 59 51 chrX 61746535 61746702 -100853228 - MIR SINE MIR -5 257 86 2537 132 42 5 chrX 61746702 61747112 -100852818 + MSTA LTR MaLR 1 425 -3 585 286 59 51 chrX 61747112 61747199 -100852731 - MIR SINE MIR -176 86 1 751 196 145 0 chrX 61747209 61747388 -100852542 - MER3 DNA MER1_type -4 205 1 361 167 0 0 chrX 61747712 61747772 -100852158 - AluJ/FLAM SINE Alu -242 60 1 1774 141 60 15 chrX 61748138 61748471 -100851459 - MER7A DNA MER2_type 0 346 1 474 267 30 0 chrX 61748471 61748606 -100851324 - MIR SINE MIR -23 239 101 584 221 44 13 chrX 61748749 61748907 -100851023 + LTR41 LTR ERVL 8 170 -603 1747 159 0 52 chrX 61749345 61749653 -100850277 - AluJb SINE Alu -16 296 5 335 247 101 63 chrX 61749831 61749989 -100849941 - MIR SINE MIR -18 244 81 40226 52 1 10 chrX 61750147 61756357 -100843573 - L1PA5 LINE L1 0 6154 3 3782 37 0 0 chrX 61756357 61756873 -100843057 - L1P LINE L1 -727 5428 4913 424 172 306 0 chrX 61756972 61757152 -100842778 + Charlie5 DNA MER1_type 2390 2624 0 318 209 0 0 chrX 61757285 61757352 -100842578 + MIR SINE MIR 183 249 -13 662 69 10 0 chrX 61758017 61758118 -100841812 + (TCCTG)n Simple_repeat Simple_repeat 4 105 0 2094 103 0 11 chrX 61758118 61758399 -100841531 - AluSp SINE Alu -35 278 1 24 0 0 0 chrX 61758506 61758530 -100841400 + AT_rich Low_complexity Low_complexity 1 24 0 250 225 154 18 chrX 61758598 61758767 -100841163 - HAL1 LINE L1 -92 2415 2224 230 270 80 22 chrX 61758881 61759018 -100840912 - HAL1b LINE L1 -457 891 747 227 278 42 14 chrX 61759066 61759138 -100840792 - MIR SINE MIR -187 75 2 372 324 54 14 chrX 61760284 61760432 -100839498 - MIR SINE MIR -106 156 3 1289 213 46 46 chrX 61760483 61760900 -100839030 + L1ME3A LINE L1 5744 6160 -10 1080 241 24 8 chrX 61761104 61761357 -100838573 + MIR SINE MIR 6 262 0 1581 201 25 3 chrX 61761442 61761726 -100838204 - AluJo SINE Alu -22 290 1 473 281 38 45 chrX 61761726 61761987 -100837943 - L1ME LINE L1 -400 5764 5506 2804 32 0 37 chrX 61762252 61762663 -100837267 + L1PA4 LINE L1 5770 6166 0 675 227 0 0 chrX 61763104 61763258 -100836672 + MER3 DNA MER1_type 35 188 -21 597 215 57 68 chrX 61763355 61763532 -100836398 - MIR SINE MIR -72 190 16 822 162 9 101 chrX 61763679 61763837 -100836093 - Tigger1 DNA MER2_type -3 2415 2283 2419 96 0 6 chrX 61763837 61764151 -100835779 - AluSx SINE Alu 0 312 1 822 162 9 101 chrX 61764151 61764220 -100835710 - Tigger1 DNA MER2_type -135 2283 2209 * 865 154 0 31 chrX 61764217 61764379 -100835551 - Tigger1 DNA MER2_type -2261 157 1 3942 115 57 3 chrX 61764407 61764988 -100834942 + LTR9 LTR ERV1 1 612 0 1548 188 111 14 chrX 61765106 61765136 -100834794 - MLT2D LTR ERVL -8 406 380 342 45 0 0 chrX 61765136 61765180 -100834750 + (TG)n Simple_repeat Simple_repeat 2 45 0 1548 188 111 14 chrX 61765180 61765517 -100834413 - MLT2D LTR ERVL -34 380 3 567 104 24 48 chrX 61765561 61765686 -100834244 + Tigger7 DNA MER2_type 2262 2383 -104 452 260 134 82 chrX 61765761 61765863 -100834067 - MLT1L LTR MaLR -207 408 313 1736 168 16 10 chrX 61765863 61766166 -100833764 - AluSx SINE Alu -7 305 1 452 260 134 82 chrX 61766166 61766451 -100833479 - MLT1L LTR MaLR -302 313 1 292 303 35 31 chrX 61766571 61766723 -100833207 - MIR SINE MIR -87 121 13 1979 125 109 60 chrX 61766750 61767181 -100832749 - LTR47A LTR ERVL 0 452 1 23 0 0 0 chrX 61767240 61767263 -100832667 + AT_rich Low_complexity Low_complexity 1 23 0 614 234 50 0 chrX 61767315 61767456 -100832474 - MIR3 SINE MIR -30 178 31 225 322 69 0 chrX 61767628 61767715 -100832215 + MIR3 SINE MIR 107 199 -9 260 304 89 0 chrX 61768284 61768396 -100831534 - MIR SINE MIR -44 218 97 307 183 25 12 chrX 61768599 61768680 -100831250 - MLT1H LTR MaLR -21 569 288 553 309 26 17 chrX 61768795 61769028 -100830902 - MLT1H LTR MaLR -289 260 26 274 296 28 0 chrX 61769148 61769219 -100830711 + MIR SINE MIR 39 111 -97 2440 89 3 0 chrX 61769417 61769720 -100830210 + AluSc SINE Alu 1 304 -5 262 362 95 30 chrX 61769821 61770053 -100829877 + L3b LINE CR1 1293 1539 -44 614 213 25 166 chrX 61770116 61770393 -100829537 - MIR SINE MIR -11 251 14 631 240 91 0 chrX 61770422 61770576 -100829354 + MIR SINE MIR 61 228 -34 6735 78 11 5 chrX 61771655 61772634 -100827296 - L1MA1 LINE L1 0 6302 5318 1280 207 37 35 chrX 61772635 61772983 -100826947 - L1M1 LINE L1 -7204 361 13 1363 123 106 47 chrX 61773025 61773260 -100826670 - AluJb SINE Alu -59 253 5 222 250 29 110 chrX 61773705 61773841 -100826089 - L2 LINE L2 -214 3058 2934 298 317 50 0 chrX 61773973 61774093 -100825837 + MIR SINE MIR 67 192 -70 262 327 69 0 chrX 61774195 61774296 -100825634 - L2 LINE L2 -5 3308 3201 2121 114 0 3 chrX 61774796 61775085 -100824845 + AluSq SINE Alu 1 288 -25 24 0 0 0 chrX 61775088 61775112 -100824818 + AT_rich Low_complexity Low_complexity 1 24 0 196 397 27 20 chrX 61775474 61775620 -100824310 - L2 LINE L2 -298 2974 2828 201 337 32 0 chrX 61775806 61775901 -100824029 - MIR SINE MIR -113 149 52 531 252 64 36 chrX 61775933 61776183 -100823747 + MIR SINE MIR 3 259 -3 916 292 73 56 chrX 61776360 61776952 -100822978 - L2 LINE L2 -4 3309 2702 376 315 36 30 chrX 61776982 61777178 -100822752 - MIR SINE MIR -37 225 30 2221 110 0 0 chrX 61777213 61777503 -100822427 + AluSx SINE Alu 1 290 -22 3462 187 25 55 chrX 61777511 61777736 -100822194 - L1MB4 LINE L1 -13 6167 5937 1995 150 10 0 chrX 61777736 61778029 -100821901 + AluSx SINE Alu 1 296 -16 3462 187 25 55 chrX 61778029 61778510 -100821420 - L1MB4 LINE L1 -243 5937 5443 1463 172 34 22 chrX 61778510 61778777 -100821153 - AluJo SINE Alu -22 290 21 3462 187 25 55 chrX 61778777 61778965 -100820965 - L1MB4 LINE L1 -737 5443 5300 2295 107 0 3 chrX 61778965 61779263 -100820667 - AluSq SINE Alu -16 297 1 3462 187 25 55 chrX 61779263 61779326 -100820604 - L1MB4 LINE L1 -880 5300 5237 453 296 154 0 chrX 61779335 61779555 -100820375 - L1ME4a LINE L1 -179 5942 5689 588 274 91 33 chrX 61779712 61780253 -100819677 + L1 LINE L1 2653 3224 -2922 298 269 25 8 chrX 61780640 61780759 -100819171 + L1 LINE L1 4007 4127 -2019 2166 114 23 3 chrX 61780790 61781096 -100818834 + AluSq SINE Alu 1 312 -1 1465 126 15 11 chrX 61781347 61781616 -100818314 + LTR1 LTR ERV1 1 270 -515 2913 143 30 30 chrX 61781652 61782226 -100817704 + LTR1 LTR ERV1 212 785 0 407 325 29 15 chrX 61782226 61782432 -100817498 + L1 LINE L1 4378 4586 -1560 538 350 67 26 chrX 61782461 61782804 -100817126 + L1 LINE L1 4672 5028 -1118 2854 202 98 36 chrX 61782854 61783114 -100816816 + L1MB7 LINE L1 3961 4203 -1943 243 61 0 0 chrX 61783114 61783147 -100816783 + (CA)n Simple_repeat Simple_repeat 2 34 0 2854 202 98 36 chrX 61783147 61783616 -100816314 + L1MB7 LINE L1 4203 4763 -1383 2245 113 3 0 chrX 61783616 61783917 -100816013 + AluSq SINE Alu 1 302 -11 2854 202 98 36 chrX 61783917 61784113 -100815817 + L1MB7 LINE L1 4763 4945 -1201 1907 190 27 2 chrX 61784113 61784523 -100815407 + L1MB7 LINE L1 5765 6184 0 280 303 164 26 chrX 61784812 61784964 -100814966 + MIR SINE MIR 84 256 -6 2175 79 0 66 chrX 61785042 61785345 -100814585 - AluSx SINE Alu -29 283 1 452 261 44 1 chrX 61786532 61786668 -100813262 + MIR SINE MIR 7 148 -60 189 0 0 0 chrX 61786788 61786809 -100813121 + (T)n Simple_repeat Simple_repeat 1 21 0 248 326 51 20 chrX 61786889 61786987 -100812943 - L2 LINE L2 -18 3254 3154 210 144 206 0 chrX 61787554 61787618 -100812312 - MIR SINE MIR -108 100 31 2108 144 3 0 chrX 61787673 61787971 -100811959 + AluSq SINE Alu 1 299 -14 2196 213 22 55 chrX 61788116 61788697 -100811233 + MER68 LTR ERV1 1 562 0 3249 182 106 9 chrX 61788824 61789598 -100810332 - L1MC2 LINE L1 -1 6343 5495 334 123 35 0 chrX 61789599 61789656 -100810274 - MADE1 DNA Mariner -21 59 1 304 173 37 0 chrX 61789657 61789738 -100810192 - L1MCb LINE L1 -1621 4943 4860 * 588 122 8 57 chrX 61789736 61789859 -100810071 - L1MA2 LINE L1 -401 5903 5787 279 225 25 25 chrX 61789829 61789949 -100809981 - L1MCb LINE L1 -2848 3716 3597 * 38822 68 3 7 chrX 61789976 61796148 -100803782 - L1PA5 LINE L1 -2 6152 4 651 242 27 0 chrX 61796152 61796375 -100803555 - L1MCb LINE L1 -2996 3568 3340 689 207 0 7 chrX 61796390 61796525 -100803405 - AluJb SINE Alu -178 134 1 1660 249 24 28 chrX 61796540 61797195 -100802735 - L1MCb LINE L1 -3246 3318 2666 4175 117 39 38 chrX 61797201 61797937 -100801993 - L1PB3 LINE L1 -5 6149 5413 39578 33 19 1 chrX 61797961 61803985 -100795945 - L1PA2 LINE L1 -1 6154 2 1364 168 40 3 chrX 61803985 61804392 -100795538 - L1PB3 LINE L1 -727 5427 5010 * 3341 232 74 37 chrX 61804367 61805877 -100794053 - L1MCb LINE L1 -3999 2746 1020 2144 142 0 0 chrX 61805877 61806186 -100793744 - AluSx SINE Alu -3 309 1 3341 232 74 37 chrX 61806186 61806516 -100793414 - L1MCb LINE L1 -5725 1020 704 565 249 52 30 chrX 61806516 61806749 -100793181 - L1MCb LINE L1 -6166 398 161 246 310 20 50 chrX 61806758 61806858 -100793072 + MIR3 SINE MIR 99 195 -13 273 292 6 58 chrX 61807180 61807351 -100792579 + T-rich Low_complexity Low_complexity 4 165 0 1731 157 39 7 chrX 61807534 61807814 -100792116 - AluJb SINE Alu -23 289 1 256 122 0 0 chrX 61808008 61808049 -100791881 - L2 LINE L2 -1 3312 3272 2193 90 14 3 chrX 61808278 61808596 -100791334 - AluSg SINE Alu 0 310 1 367 293 46 120 chrX 61809347 61809606 -100790324 - L2 LINE L2 -7 3265 3026 189 154 0 0 chrX 61810570 61810609 -100789321 + (ATG)n Simple_repeat Simple_repeat 1 39 0 398 315 162 9 chrX 61811063 61811285 -100788645 - MIR SINE MIR -6 256 1 1357 178 0 0 chrX 61811318 61811531 -100788399 - AluJo SINE Alu -13 299 87 956 217 39 5 chrX 61811970 61812177 -100787753 - MER20 DNA MER1_type -5 214 1 187 296 0 0 chrX 61812189 61812243 -100787687 + MIR SINE MIR 105 158 -104 387 352 148 16 chrX 61812259 61812509 -100787421 - L2 LINE L2 -21 3251 2969 2184 136 3 0 chrX 61812511 61812916 -100787014 + AluSx SINE Alu 1 406 0 471 233 0 25 chrX 61812993 61813113 -100786817 - MER94 DNA DNA -14 120 4 23 78 0 0 chrX 61813412 61813463 -100786467 + AT_rich Low_complexity Low_complexity 1 51 0 2358 81 7 16 chrX 61813470 61813780 -100786150 + AluY SINE Alu 1 307 -4 432 77 0 0 chrX 61814885 61814950 -100784980 + (CA)n Simple_repeat Simple_repeat 2 66 0 2081 115 0 0 chrX 61815417 61815728 -100784202 - AluSp SINE Alu 0 316 6 224 250 0 0 chrX 61816402 61816446 -100783484 - L2 LINE L2 -19 3253 3210 411 266 36 43 chrX 61816707 61816846 -100783084 + MIR SINE MIR 20 157 -105 438 409 113 5 chrX 61816850 61817256 -100782674 - L2 LINE L2 -13 3259 2810 366 307 7 85 chrX 61817578 61817622 -100782308 - MIR3 SINE MIR -63 145 99 2047 95 15 0 chrX 61817622 61817906 -100782024 - AluSx SINE Alu 0 304 17 366 307 7 85 chrX 61817906 61818013 -100781917 - MIR3 SINE MIR -109 99 5 2327 90 10 0 chrX 61818104 61818394 -100781536 + AluSg SINE Alu 1 293 -17 407 246 35 63 chrX 61820690 61820832 -100779098 - MIR3 SINE MIR -46 162 25 1836 147 49 0 chrX 61820834 61821120 -100778810 - AluSx SINE Alu -12 300 1 1274 186 111 21 chrX 61821397 61821677 -100778253 - AluJo SINE Alu -5 307 3 203 194 0 0 chrX 61821745 61821781 -100778149 + (TAA)n Simple_repeat Simple_repeat 1 36 0 372 313 0 0 chrX 61821782 61821897 -100778033 - MIR SINE MIR 0 262 148 325 289 52 0 chrX 61822081 61822178 -100777752 - MIR3 SINE MIR -18 190 89 1376 175 61 93 chrX 61822415 61822792 -100777138 - MLT1A1 LTR MaLR 0 365 1 628 300 76 0 chrX 61822855 61823092 -100776838 + MIR SINE MIR 5 259 -3 251 264 85 54 chrX 61823843 61823972 -100775958 - MIR SINE MIR -72 136 21 475 267 0 55 chrX 61824386 61824538 -100775392 + MIR SINE MIR 34 176 -67 344 343 79 7 chrX 61825326 61825466 -100774464 - MIR3 SINE MIR -11 197 48 711 65 0 0 chrX 61825821 61825914 -100774016 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 2167 123 10 0 chrX 61825923 61826224 -100773706 - AluSx SINE Alu -8 304 1 294 287 72 107 chrX 61828173 61828421 -100771509 + L2 LINE L2 1801 2033 -1281 1661 157 95 0 chrX 61828421 61828695 -100771235 - AluJo SINE Alu -12 300 1 294 287 72 107 chrX 61828695 61828819 -100771111 + L2 LINE L2 2033 2160 -1154 226 251 74 47 chrX 61828827 61829042 -100770888 - L1MEc LINE L1 -5516 880 660 619 357 11 3 chrX 61829096 61829443 -100770487 - L1MEc LINE L1 -6025 371 22 236 306 59 12 chrX 61829447 61829532 -100770398 + L2 LINE L2 2211 2299 -1015 280 357 39 8 chrX 61830548 61830677 -100769253 - L2 LINE L2 0 3313 3181 1564 36 0 10 chrX 61831362 61831558 -100768372 + L1PA5 LINE L1 5961 6154 0 1475 189 83 87 chrX 61832917 61832985 -100766945 - MLT1D LTR MaLR 0 505 438 2320 68 0 0 chrX 61832985 61833297 -100766633 + AluY SINE Alu 1 312 0 1475 189 83 87 chrX 61833297 61833734 -100766196 - MLT1D LTR MaLR -67 438 1 1247 187 84 67 chrX 61833937 61834296 -100765634 + MLT1A1 LTR MaLR 1 365 0 381 309 8 16 chrX 61834635 61834761 -100765169 - L2 LINE L2 -1 3312 3188 1579 72 5 0 chrX 61836027 61836221 -100763709 + AluSq SINE Alu 12 206 -107 186 43 0 0 chrX 61836326 61836349 -100763581 + (A)n Simple_repeat Simple_repeat 1 23 0 278 179 0 0 chrX 61836665 61836721 -100763209 - L1ME3 LINE L1 0 6162 6107 1353 221 68 72 chrX 61836756 61837134 -100762796 - L1ME3A LINE L1 -49 6121 5744 3613 201 53 43 chrX 61837134 61838023 -100761907 + MER54A LTR ERVL 2 899 -2 1353 221 68 72 chrX 61838023 61838173 -100761757 - L1ME3A LINE L1 -426 5744 5595 2561 224 31 46 chrX 61838201 61839051 -100760879 - L1MB7 LINE L1 -31 6153 5306 2343 113 0 0 chrX 61839051 61839362 -100760568 - AluSq SINE Alu -2 311 1 2561 224 31 46 chrX 61839362 61839479 -100760451 - L1MB7 LINE L1 -878 5306 5189 34 55 0 0 chrX 61839488 61839543 -100760387 + AT_rich Low_complexity Low_complexity 1 55 0 1968 115 47 0 chrX 61839543 61839865 -100760065 - L1MA2 LINE L1 -2 6302 5966 8975 29 0 0 chrX 61839873 61841713 -100758217 - L1PA3 LINE L1 -3 6152 4313 8032 36 0 0 chrX 61841713 61842751 -100757179 - L1PA3 LINE L1 -2559 3587 2550 2044 106 33 6 chrX 61842752 61843082 -100756848 - L1MA2 LINE L1 -323 5981 5643 247 289 0 0 chrX 61843079 61843169 -100756761 + L1MC4 LINE L1 6614 6703 -1339 * 350 241 18 0 chrX 61843200 61843312 -100756618 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 3116 204 64 12 chrX 61843312 61844257 -100755673 - L1M1 LINE L1 -654 5648 5087 2406 85 0 7 chrX 61844257 61844564 -100755366 - AluSq SINE Alu -8 305 1 3116 204 64 12 chrX 61844564 61844986 -100754944 - L1M1 LINE L1 -1215 5087 4689 8504 134 30 42 chrX 61844996 61846612 -100753318 + Tigger1 DNA MER2_type 2 1599 -819 506 252 47 0 chrX 61846666 61846793 -100753137 + MIR SINE MIR 77 209 -53 2397 182 48 2 chrX 61846971 61847356 -100752574 + L1MA9 LINE L1 5396 5813 -499 279 0 0 0 chrX 61847356 61847387 -100752543 + (CA)n Simple_repeat Simple_repeat 2 32 0 2397 182 48 2 chrX 61847387 61847523 -100752407 + L1MA9 LINE L1 5813 5941 -371 25 31 0 0 chrX 61847893 61847925 -100752005 + AT_rich Low_complexity Low_complexity 1 32 0 34 24 0 0 chrX 61848402 61848443 -100751487 + AT_rich Low_complexity Low_complexity 1 41 0 290 263 0 0 chrX 61848682 61848758 -100751172 + MER116 DNA Mariner 1 76 -4 850 291 60 35 chrX 61848797 61849309 -100750621 - L1ME3A LINE L1 -227 6754 6230 4260 245 73 15 chrX 61849424 61851205 -100748725 - L1MEc LINE L1 -2466 4491 2624 2904 271 24 9 chrX 61851321 61852069 -100747861 - L1MEc LINE L1 -5754 1105 347 1222 196 75 29 chrX 61852071 61852351 -100747579 - L1MEc LINE L1 -6551 308 16 376 358 80 0 chrX 61852507 61852708 -100747222 + L2 LINE L2 2864 3080 -233 1235 76 0 35 chrX 61852708 61852879 -100747051 + AluY SINE Alu 147 311 0 421 321 27 11 chrX 61852892 61853076 -100746854 + L2 LINE L2 3097 3283 -30 33 35 0 17 chrX 61853076 61853110 -100746820 + AT_rich Low_complexity Low_complexity 1 35 -22 2099 134 102 3 chrX 61853110 61853482 -100746448 - L1PA16 LINE L1 -9 6157 5749 33 35 0 17 chrX 61853482 61853505 -100746425 + AT_rich Low_complexity Low_complexity 35 57 0 807 217 50 5 chrX 61853553 61853751 -100746179 + MER3 DNA MER1_type 2 208 -1 1500 181 25 20 chrX 61854081 61854435 -100745495 + L1MB8 LINE L1 5809 6164 -14 180 158 0 0 chrX 61854435 61854473 -100745457 + T-rich Low_complexity Low_complexity 1 38 0 273 269 88 16 chrX 61854513 61854604 -100745326 - MER5A DNA MER1_type -68 121 16 1002 130 45 29 chrX 61855196 61855497 -100744433 - THE1C LTR MaLR 0 375 1 320 0 25 0 chrX 61855920 61855960 -100743970 + (TG)n Simple_repeat Simple_repeat 2 42 0 715 319 17 4 chrX 61856481 61856713 -100743217 + MIR SINE MIR 28 262 0 520 231 19 13 chrX 61856764 61856920 -100743010 - MER20B DNA MER1_type 0 783 627 1005 245 71 49 chrX 61856966 61857334 -100742596 - MER68 LTR ERV1 -11 551 176 374 226 10 29 chrX 61857349 61857451 -100742479 - HAL1 LINE L1 -2115 392 293 2325 109 0 0 chrX 61857575 61857887 -100742043 - AluSx SINE Alu 0 312 1 488 383 20 37 chrX 61857990 61858073 -100741857 - L2 LINE L2 -1635 1679 1596 1851 154 23 3 chrX 61858073 61858372 -100741558 + AluJb SINE Alu 1 305 -7 488 383 20 37 chrX 61858372 61858608 -100741322 - L2 LINE L2 -1718 1596 1370 2581 122 28 21 chrX 61858608 61859033 -100740897 + MSTA LTR MaLR 1 428 0 488 383 20 37 chrX 61859033 61859248 -100740682 - L2 LINE L2 -1944 1370 1153 999 190 16 11 chrX 61859499 61859683 -100740247 + MER58A DNA MER1_type 40 224 0 3592 213 25 24 chrX 61860486 61861349 -100738581 - L1MB5 LINE L1 0 6174 5311 525 221 38 90 chrX 61861752 61862042 -100737888 + ORSL DNA AcHobo 1 275 0 448 264 178 0 chrX 61863118 61863281 -100736649 - MIR SINE MIR -1 261 70 204 67 0 0 chrX 61863982 61864012 -100735918 + (CA)n Simple_repeat Simple_repeat 2 31 0 721 295 55 16 chrX 61864475 61864729 -100735201 - MER102a DNA MER1_type -14 316 53 853 235 52 5 chrX 61864751 61864964 -100734966 - MER58A DNA MER1_type -1 223 1 478 228 35 26 chrX 61865946 61866060 -100733870 + L2 LINE L2 3199 3313 0 1544 161 0 67 chrX 61866511 61866810 -100733120 + AluJb SINE Alu 26 304 -8 2219 207 28 5 chrX 61866852 61867282 -100732648 - MER68 LTR ERV1 0 562 123 22 0 0 0 chrX 61868017 61868039 -100731891 + AT_rich Low_complexity Low_complexity 1 22 0 522 0 0 0 chrX 61868853 61868911 -100731019 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 216 143 0 0 chrX 61869051 61869093 -100730837 + (TC)n Simple_repeat Simple_repeat 2 43 0 637 200 31 12 chrX 61869346 61869506 -100730424 + MER104 DNA Tc2 5 167 -13 1042 249 126 47 chrX 61869690 61870205 -100729725 - LTR1B LTR ERV1 -237 589 34 227 229 44 0 chrX 61870214 61870285 -100729645 - LTR1B LTR ERV1 -686 102 28 227 378 20 20 chrX 61870348 61870446 -100729484 - L2 LINE L2 -6 3266 3169 1337 218 144 29 chrX 61871300 61871854 -100728076 - L1MC5 LINE L1 -74 7887 7270 902 298 20 12 chrX 61871923 61872178 -100727752 + MIR SINE MIR 5 261 -1 498 283 122 0 chrX 61874033 61874213 -100725717 - MIR SINE MIR -27 235 34 2657 51 0 0 chrX 61874213 61874524 -100725406 + AluY SINE Alu 1 311 0 296 187 0 67 chrX 61874653 61874728 -100725202 + MER3 DNA MER1_type 140 209 0 1593 265 60 91 chrX 61874787 61875482 -100724448 + L2 LINE L2 2227 2900 -414 2252 122 0 0 chrX 61876611 61876923 -100723007 - AluSx SINE Alu 0 312 1 243 88 0 0 chrX 61878042 61878076 -100721854 + (T)n Simple_repeat Simple_repeat 1 34 0 4879 14 0 0 chrX 61878106 61878663 -100721267 - L1PA2 LINE L1 -3 6152 5596 590 40 0 0 chrX 61878663 61878737 -100721193 + L1P LINE L1 3982 4055 -2091 546 299 108 40 chrX 61878733 61879300 -100720630 - L1M4 LINE L1 -3139 3007 2391 * 2066 104 11 0 chrX 61879300 61879625 -100720305 + AluSx SINE Alu 1 328 0 546 299 108 40 chrX 61879625 61879684 -100720246 - L1M4 LINE L1 -3755 2391 2337 343 298 223 0 chrX 61880214 61880452 -100719478 - L1ME4a LINE L1 -245 5876 5586 356 297 13 65 chrX 61881325 61881480 -100718450 + MER5A DNA MER1_type 21 167 -22 329 334 67 24 chrX 61881664 61882245 -100717685 - L1ME4a LINE L1 -1054 5092 4487 1841 146 3 20 chrX 61882467 61882762 -100717168 + AluJo SINE Alu 7 296 -16 305 268 56 88 chrX 61882773 61882891 -100717039 - L1ME4a LINE L1 -1898 4248 4128 354 271 88 41 chrX 61882891 61883061 -100716869 - MER5B DNA MER1_type 0 178 1 305 268 56 88 chrX 61883061 61883187 -100716743 - L1ME4a LINE L1 -2018 4128 4012 606 282 67 0 chrX 61883187 61883382 -100716548 - MER63A DNA MER1_type 0 210 3 305 268 56 88 chrX 61883382 61883420 -100716510 - L1ME4a LINE L1 -2134 4012 3974 346 173 27 0 chrX 61883689 61883764 -100716166 - L1MA4 LINE L1 -282 6018 5942 2182 102 7 3 chrX 61884071 61884364 -100715566 + AluSx SINE Alu 1 294 -18 12002 171 33 48 chrX 61884580 61884910 -100715020 - L1 LINE L1 -2161 5404 5071 186 71 0 0 chrX 61884910 61884938 -100714992 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 12002 171 33 48 chrX 61884938 61885871 -100714059 - L1 LINE L1 -2494 5071 4126 1712 161 39 7 chrX 61885871 61886150 -100713780 + AluJb SINE Alu 5 292 -20 12002 171 33 48 chrX 61886150 61889446 -100710484 - L1 LINE L1 -3439 4126 267 5155 176 13 9 chrX 61889448 61890489 -100709441 - L1 LINE L1 -781 5365 4320 2911 231 50 22 chrX 61890457 61891322 -100708608 - L1MCa LINE L1 -5197 894 34 * 198 286 45 38 chrX 61892469 61892602 -100707328 - MIR SINE MIR -15 247 114 1281 337 86 24 chrX 61893267 61894289 -100705641 - L2 LINE L2 -8 3264 2174 5820 57 17 1 chrX 61894302 61895056 -100704874 + MER4E LTR ERV1 1 766 0 652 333 32 29 chrX 61895057 61895402 -100704528 + L2 LINE L2 1768 2113 -1201 391 313 6 40 chrX 61895586 61895762 -100704168 - Charlie8 DNA MER1_type -2245 172 3 1310 174 7 89 chrX 61896043 61896336 -100703594 - AluJb SINE Alu -43 269 1 1110 174 99 0 chrX 61896394 61896595 -100703335 + MIR SINE MIR 2 222 -40 418 307 53 0 chrX 61896713 61896827 -100703103 + L2 LINE L2 3141 3260 -12 2433 35 0 0 chrX 61896837 61897125 -100702805 - L1PA3 LINE L1 0 6155 5868 298 232 21 42 chrX 61897129 61897224 -100702706 + MIR SINE MIR 91 183 -79 194 214 125 0 chrX 61898047 61898103 -100701827 - MIR3 SINE MIR -37 171 109 255 268 24 24 chrX 61898483 61898610 -100701320 + CT-rich Low_complexity Low_complexity 4 130 0 * 323 286 11 33 chrX 61898543 61898725 -100701205 + (TCTCTG)n Simple_repeat Simple_repeat 3 180 0 372 152 0 0 chrX 61898725 61898791 -100701139 + (TG)n Simple_repeat Simple_repeat 1 66 0 387 297 196 5 chrX 61899175 61899384 -100700546 + MIR SINE MIR 2 250 -12 297 236 0 118 chrX 61899584 61899694 -100700236 + MIR SINE MIR 22 118 -90 579 290 0 12 chrX 61900200 61900362 -100699568 + MIR3 SINE MIR 42 201 -7 2042 269 96 60 chrX 61900501 61901229 -100698701 + L1MC4 LINE L1 5329 6029 -2013 3235 143 12 20 chrX 61901229 61901829 -100698101 + L1MB7 LINE L1 5590 6184 0 2042 269 96 60 chrX 61901829 61903039 -100696891 + L1MC4 LINE L1 6029 7436 -606 1827 122 4 0 chrX 61903039 61903286 -100696644 + AluSq SINE Alu 1 248 -65 2042 269 96 60 chrX 61903286 61903916 -100696014 + L1MC4 LINE L1 7436 8042 0 349 279 33 16 chrX 61904549 61904671 -100695259 - L1ME4a LINE L1 -4 6117 5994 374 57 19 0 chrX 61904689 61904742 -100695188 + (TC)n Simple_repeat Simple_repeat 1 54 0 10638 88 12 0 chrX 61905003 61907265 -100692665 - L1PA7 LINE L1 -8 6146 3867 8993 105 1 2 chrX 61907269 61908683 -100691247 - L1P LINE L1 -1989 4157 2746 493 63 0 0 chrX 61908684 61908747 -100691183 + U6 snRNA snRNA 7 69 -38 385 315 52 14 chrX 61908750 61908963 -100690967 - L1MC5 LINE L1 -477 7484 7264 803 236 87 0 chrX 61909350 61909604 -100690326 + HsTC2 DNA Tc2 1 276 -1622 2402 53 0 0 chrX 61909770 61910092 -100689838 + AluY SINE Alu 2 323 0 847 205 68 36 chrX 61910176 61910483 -100689447 - L1MC5 LINE L1 -35 7926 7610 342 115 0 0 chrX 61910512 61910564 -100689366 + (TG)n Simple_repeat Simple_repeat 2 53 0 359 276 78 0 chrX 61910690 61910806 -100689124 - MIR3 SINE MIR -19 189 65 207 324 29 0 chrX 61910857 61910925 -100689005 - MIR3 SINE MIR -3 205 136 688 278 68 19 chrX 61910925 61911188 -100688742 + MER102a DNA MER1_type 1 276 -54 342 208 26 0 chrX 61911348 61911425 -100688505 + MER102a DNA MER1_type 251 329 -1 181 178 44 22 chrX 61912475 61912520 -100687410 - L2 LINE L2 -4 3309 3264 241 324 46 28 chrX 61912634 61912742 -100687188 - L2 LINE L2 -229 3043 2934 529 238 203 20 chrX 61912851 61913053 -100686877 - MIR SINE MIR 0 262 24 197 319 53 32 chrX 61913088 61913182 -100686748 - L2 LINE L2 -498 2816 2721 * 559 294 35 24 chrX 61913165 61913335 -100686595 + MIR3 SINE MIR 14 185 -23 384 294 38 62 chrX 61914102 61914262 -100685668 - L2 LINE L2 0 3272 3117 1431 173 97 60 chrX 61914291 61914791 -100685139 - MER39 LTR ERV1 0 707 1 397 361 52 12 chrX 61915088 61915337 -100684593 - L2 LINE L2 -785 2529 2271 991 223 62 0 chrX 61915337 61915548 -100684382 - MER58A DNA MER1_type 0 224 1 1209 284 48 51 chrX 61915582 61916220 -100683710 - L2 LINE L2 0 3313 2670 2126 214 57 33 chrX 61916220 61917432 -100682498 + L1MC/D LINE L1 4474 5699 -543 493 272 0 0 chrX 61917489 61917592 -100682338 - MIR SINE MIR -117 145 43 248 357 10 0 chrX 61917635 61917733 -100682197 - L2 LINE L2 -2521 793 695 236 253 66 55 chrX 61917775 61917866 -100682064 - L2 LINE L2 -492 2822 2731 212 221 88 15 chrX 61918483 61918551 -100681379 + MIR SINE MIR 161 233 -29 262 250 31 16 chrX 61919190 61919254 -100680676 - MIR3 SINE MIR -16 192 128 363 23 0 0 chrX 61920539 61920583 -100679347 + (CA)n Simple_repeat Simple_repeat 2 45 0 285 297 180 0 chrX 61921247 61921375 -100678555 - MIR SINE MIR -10 252 102 182 333 15 0 chrX 61921449 61921515 -100678415 - MIR3 SINE MIR 0 208 142 498 302 66 33 chrX 61921925 61922137 -100677793 + MIR SINE MIR 37 255 -7 556 269 0 8 chrX 61922615 61922745 -100677185 + MIR3 SINE MIR 31 159 -49 280 310 23 11 chrX 61923834 61923921 -100676009 + MIR SINE MIR 11 98 -164 303 250 13 13 chrX 61924298 61924374 -100675556 + MIR SINE MIR 185 260 -2 2014 147 0 7 chrX 61924609 61924915 -100675015 - AluSx SINE Alu -6 306 3 1088 250 203 8 chrX 61925251 61925635 -100674295 - L2 LINE L2 -5 3308 2850 321 177 31 31 chrX 61926358 61926488 -100673442 + CT-rich Low_complexity Low_complexity 1 130 0 227 208 132 0 chrX 61926568 61926621 -100673309 - MIR SINE MIR -3 259 200 14077 126 20 15 chrX 61926755 61927547 -100672383 + Tigger1 DNA MER2_type 30 817 -1601 2948 3 0 0 chrX 61927547 61927864 -100672066 + AluYb8 SINE Alu 1 317 -1 14077 126 20 15 chrX 61927864 61929449 -100670481 + Tigger1 DNA MER2_type 817 2418 0 399 178 0 171 chrX 61929449 61929595 -100670335 - MIR SINE MIR -62 200 80 251 317 0 48 chrX 61929958 61930062 -100669868 - L2 LINE L2 -177 3095 2997 746 291 64 37 chrX 61930121 61930524 -100669406 - MLT1J LTR MaLR -54 457 1 1199 322 200 28 chrX 61930655 61931883 -100668047 - L2 LINE L2 -428 2886 1420 1938 146 7 0 chrX 61931883 61932215 -100667715 - AluSx SINE Alu 0 334 1 1199 322 200 28 chrX 61932215 61932284 -100667646 - L2 LINE L2 -1894 1420 1364 846 210 45 10 chrX 61932594 61932794 -100667136 - MER20 DNA MER1_type -5 214 8 451 282 0 6 chrX 61932911 61933047 -100666883 - MIR SINE MIR -62 146 19 356 324 92 21 chrX 61933343 61933859 -100666071 - L1MC4a LINE L1 -529 5592 5349 1430 220 65 12 chrX 61933933 61934346 -100665584 - L1ME1 LINE L1 -190 5976 5542 497 258 31 0 chrX 61934336 61934499 -100665431 - L1ME1 LINE L1 -2537 3609 3442 * 2915 208 59 37 chrX 61934534 61935614 -100664316 - L1ME LINE L1 -608 5627 4516 859 253 44 47 chrX 61935617 61935937 -100663993 - L1ME LINE L1 -6033 363 45 213 102 20 41 chrX 61935954 61936003 -100663927 + (TAG)n Simple_repeat Simple_repeat 3 50 0 707 278 133 48 chrX 61936070 61936423 -100663507 - L2 LINE L2 -42 3271 2889 274 240 83 42 chrX 61936723 61936819 -100663111 + 7SK RNA RNA 17 116 -77 422 281 29 36 chrX 61937226 61937365 -100662565 - MIR SINE MIR -68 194 57 252 277 0 31 chrX 61938101 61938166 -100661764 - L2 LINE L2 -12 3260 3198 2297 270 97 29 chrX 61938246 61939072 -100660858 + L2 LINE L2 1834 2715 -599 707 306 162 26 chrX 61940844 61941387 -100658543 + L2 LINE L2 2702 3313 0 372 267 104 15 chrX 61941532 61941667 -100658263 + L2 LINE L2 3166 3312 -1 * 547 316 16 21 chrX 61941651 61941838 -100658092 + MIR3 SINE MIR 17 202 -6 3413 157 50 20 chrX 61941852 61942425 -100657505 - L1MB7 LINE L1 -21 6163 5564 2349 99 0 3 chrX 61942425 61942729 -100657201 - AluSg SINE Alu -7 303 1 3413 157 50 20 chrX 61942729 61942862 -100657068 - L1MB7 LINE L1 -620 5564 5436 319 337 77 6 chrX 61942862 61943031 -100656899 - MIR SINE MIR -76 186 6 231 316 98 84 chrX 61943502 61943777 -100656153 + L2 LINE L2 2804 3082 -190 783 258 59 14 chrX 61944081 61944302 -100655628 + MIR SINE MIR 20 250 -12 216 214 0 0 chrX 61944315 61944371 -100655559 + (TTA)n Simple_repeat Simple_repeat 2 57 0 964 253 25 20 chrX 61945124 61945369 -100654561 - MIR SINE MIR 0 262 17 626 229 76 34 chrX 61945501 61945737 -100654193 - L1MC5 LINE L1 -205 7756 7511 1791 37 0 0 chrX 61945764 61945980 -100653950 - L1PA5 LINE L1 0 6154 5939 431 133 60 24 chrX 61947226 61947309 -100652621 + L2 LINE L2 3189 3274 -39 424 211 43 172 chrX 61947292 61947378 -100652552 - MIR SINE MIR -27 235 140 * 2385 103 0 0 chrX 61947378 61947680 -100652250 - AluSx SINE Alu -10 302 1 424 211 43 172 chrX 61947680 61947849 -100652081 - MIR SINE MIR -122 140 13 472 316 0 0 chrX 61948243 61948357 -100651573 - L2 LINE L2 -4 3309 3196 1486 203 86 19 chrX 61948360 61948675 -100651255 + MER58B DNA MER1_type 2 337 -4 274 265 59 29 chrX 61949161 61949263 -100650667 + MIR SINE MIR 84 188 -74 438 357 27 11 chrX 61950457 61950642 -100649288 - MIR SINE MIR -72 190 3 820 219 128 18 chrX 61951818 61952037 -100647893 + MIR SINE MIR 12 254 -8 298 306 104 12 chrX 61952064 61952237 -100647693 + MIR SINE MIR 74 262 0 285 51 0 0 chrX 61952620 61952659 -100647271 + (TG)n Simple_repeat Simple_repeat 2 40 0 544 129 1 61 chrX 61952829 61952943 -100646987 + L1PA6 LINE L1 6049 6153 -1 337 303 0 20 chrX 61953032 61953131 -100646799 - MIR3 SINE MIR -101 107 11 692 269 23 11 chrX 61953584 61953759 -100646171 + MER5B DNA MER1_type 2 178 0 493 271 18 48 chrX 61953809 61953975 -100645955 + MIR SINE MIR 97 257 -5 32 0 0 0 chrX 61954010 61954042 -100645888 + AT_rich Low_complexity Low_complexity 1 32 0 441 316 26 42 chrX 61954085 61954275 -100645655 + MIR SINE MIR 34 220 -42 6547 57 0 2 chrX 61954801 61955595 -100644335 - L1PA5 LINE L1 0 6154 5363 369 328 16 0 chrX 61955612 61955737 -100644193 - MIR SINE MIR -63 145 19 202 0 91 0 chrX 61956325 61956358 -100643572 + T-rich Low_complexity Low_complexity 2 37 0 307 242 0 133 chrX 61956389 61956554 -100643376 - L1ME LINE L1 -477 5644 5502 494 287 81 19 chrX 61956721 61956930 -100643000 - MIR SINE MIR -1 261 40 22 35 0 0 chrX 61956946 61956975 -100642955 + AT_rich Low_complexity Low_complexity 1 29 0 265 309 0 43 chrX 61958465 61958616 -100641314 + CT-rich Low_complexity Low_complexity 1 144 -36 2344 104 0 0 chrX 61958616 61958915 -100641015 - AluSx SINE Alu -13 299 1 265 309 0 43 chrX 61958915 61958951 -100640979 + CT-rich Low_complexity Low_complexity 144 180 0 * 360 285 11 28 chrX 61958917 61959096 -100640834 + (TCTCTG)n Simple_repeat Simple_repeat 1 176 0 428 242 38 53 chrX 61959364 61959496 -100640434 + MER5B DNA MER1_type 1 130 -48 225 273 0 0 chrX 61960200 61960255 -100639675 - L2 LINE L2 -223 3049 2995 460 275 117 102 chrX 61961096 61961746 -100638184 - L2 LINE L2 -427 2887 2228 275 225 17 108 chrX 61961828 61961948 -100637982 - L2 LINE L2 -1079 2235 2127 361 203 14 14 chrX 61962793 61962867 -100637063 + MIR3 SINE MIR 81 154 -54 312 285 23 31 chrX 61963050 61963180 -100636750 - MIR SINE MIR -50 212 84 272 263 25 25 chrX 61964908 61964988 -100634942 - MIR3 SINE MIR -28 180 101 473 324 37 0 chrX 61966526 61966662 -100633268 - MIR3 SINE MIR -63 145 5 7614 4 0 0 chrX 61967538 61968368 -100631562 - L1HS LINE L1 0 6155 5326 377 205 62 54 chrX 61968777 61968889 -100631041 - MIR SINE MIR -80 182 70 530 233 164 25 chrX 61969020 61969179 -100630751 + MER5A DNA MER1_type 9 189 0 349 342 105 7 chrX 61969475 61969627 -100630303 + MIR3 SINE MIR 40 206 -2 195 179 77 0 chrX 61970030 61970069 -100629861 + MER5A DNA MER1_type 148 189 0 * 207 320 40 10 chrX 61970069 61970156 -100629774 - MIR3 SINE MIR -52 156 67 315 236 153 0 chrX 61970365 61970480 -100629450 - MIR SINE MIR -85 123 16 228 250 11 80 chrX 61970620 61970708 -100629222 - MIR SINE MIR -70 192 111 1060 206 64 75 chrX 61970712 61971227 -100628703 - MLT1E3 LTR MaLR 0 624 1 509 321 36 26 chrX 61971620 61971813 -100628117 - MIR SINE MIR -22 240 46 3426 119 59 4 chrX 61972232 61972788 -100627142 - L1MA4A LINE L1 -10 6293 5707 571 122 38 15 chrX 61972812 61972943 -100626987 + CT-rich Low_complexity Low_complexity 4 137 0 432 97 0 0 chrX 61973043 61973105 -100626825 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 10949 199 32 59 chrX 61973110 61973130 -100626800 - L1 LINE L1 -1772 5076 5057 1743 139 29 7 chrX 61973130 61973404 -100626526 - AluJb SINE Alu -32 280 1 10949 199 32 59 chrX 61973404 61976934 -100622996 - L1 LINE L1 -1791 5057 1710 2755 135 52 7 chrX 61976934 61977342 -100622588 - MSTB LTR MaLR 0 426 1 10949 199 32 59 chrX 61977342 61979004 -100620926 - L1 LINE L1 -5138 1710 6 219 69 0 0 chrX 61979928 61979957 -100619973 + (TAG)n Simple_repeat Simple_repeat 2 30 0 1832 179 94 35 chrX 61980808 61980847 -100619083 + MSTD LTR MaLR 1 36 -360 2015 150 0 6 chrX 61980847 61981161 -100618769 + AluSx SINE Alu 1 312 0 1832 179 94 35 chrX 61981161 61981495 -100618435 + MSTD LTR MaLR 36 396 0 274 279 51 13 chrX 61981661 61981740 -100618190 + MIR SINE MIR 58 139 -123 539 241 85 0 chrX 61981783 61981924 -100618006 - MER91B DNA MER1_type 0 190 38 465 328 32 13 chrX 61982238 61982428 -100617502 - MIR SINE MIR -66 142 1 225 0 0 0 chrX 61982444 61982469 -100617461 + (CA)n Simple_repeat Simple_repeat 2 26 0 16096 122 18 2 chrX 61982486 61984855 -100615075 - Tigger1 DNA MER2_type -6 2412 6 230 202 0 60 chrX 61984873 61984957 -100614973 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 288 70 0 0 chrX 61984981 61985024 -100614906 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1567 175 49 28 chrX 61985026 61985438 -100614492 - MLT2B1 LTR ERVL -50 470 1 957 189 149 0 chrX 61986297 61986519 -100613411 - MIR SINE MIR -5 257 3 446 298 25 25 chrX 61986525 61986686 -100613244 + MIR SINE MIR 6 166 -96 2446 56 0 10 chrX 61986728 61987033 -100612897 + AluY SINE Alu 1 302 -9 445 313 182 5 chrX 61987519 61987733 -100612197 + MIR SINE MIR 9 260 -2 1348 247 62 15 chrX 61988001 61988406 -100611524 - LTR33 LTR ERVL -73 448 25 300 303 10 20 chrX 61989527 61989626 -100610304 + MIR SINE MIR 49 146 -62 244 331 0 89 chrX 61989759 61989916 -100610014 - L2 LINE L2 -384 2930 2788 1606 193 37 5 chrX 61989962 61990336 -100609594 - Charlie1 DNA MER1_type -9 2752 2367 8497 115 5 0 chrX 61990336 61991579 -100608351 - L1M1 LINE L1 -3130 4435 3187 * 9462 167 32 102 chrX 61991550 61992933 -100606997 - L1M1 LINE L1 -5535 2030 660 1145 143 22 0 chrX 61992933 61993115 -100606815 - AluSg/x SINE Alu -1 311 126 9462 167 32 102 chrX 61993115 61993718 -100606212 - L1M1 LINE L1 -6905 660 16 1841 294 63 43 chrX 61993731 61993882 -100606048 + L2 LINE L2 2087 2234 -1038 9529 46 4 0 chrX 61993882 61994949 -100604981 - MER11C LTR ERVK 0 1071 1 1841 294 63 43 chrX 61994949 61995775 -100604155 + L2 LINE L2 2234 3082 -190 3413 212 90 15 chrX 61996380 61997278 -100602652 - L1ME3A LINE L1 -8 6162 5224 392 129 0 0 chrX 61997422 61997492 -100602438 - L1MA4A LINE L1 -15 6288 6219 513 308 106 35 chrX 61997602 61997800 -100602130 + MIR SINE MIR 41 252 -10 20430 41 1 0 chrX 61997839 62000374 -100599556 - L1PA4 LINE L1 -2153 3993 1456 11664 31 1 0 chrX 62000384 62002559 -100597371 + L1PA4 LINE L1 3977 6152 -3 276 308 19 10 chrX 62002969 62003073 -100596857 - L2 LINE L2 -1046 2268 2164 217 167 0 0 chrX 62003312 62003354 -100596576 - L2 LINE L2 0 3313 3272 937 203 16 0 chrX 62003360 62003547 -100596383 - MER90 LTR ERV1 -55 559 370 740 289 18 9 chrX 62003548 62003776 -100596154 - MER90 LTR ERV1 -384 230 1 13000 99 12 54 chrX 62004511 62007298 -100592632 + L1PA7 LINE L1 3415 6143 -11 2229 299 50 62 chrX 62007785 62008405 -100591525 - MER110-int LTR ERV1 -1688 2959 2358 2121 69 48 7 chrX 62008405 62008696 -100591234 - AluY SINE Alu -8 303 1 2229 299 50 62 chrX 62008696 62009203 -100590727 - MER110-int LTR ERV1 -2289 2358 1846 1934 126 121 62 chrX 62009406 62009810 -100590120 - MSTA LTR MaLR 0 428 1 21 0 0 0 chrX 62010185 62010206 -100589724 + AT_rich Low_complexity Low_complexity 1 21 0 11644 224 39 15 chrX 62010517 62014214 -100585716 + L1PA15 LINE L1 1186 4974 -1823 1633 195 16 3 chrX 62014223 62014593 -100585337 + AluJb SINE Alu 4 377 0 207 0 0 0 chrX 62014591 62014614 -100585316 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 5388 116 34 24 chrX 62014614 62016452 -100583478 + L1PA15 LINE L1 4967 6808 -8 8753 104 3 2 chrX 62016460 62018530 -100581400 - L1PA8 LINE L1 -4 6168 4100 5412 107 13 31 chrX 62018531 62019434 -100580496 - L1PA8 LINE L1 -2445 3701 2815 4893 92 10 0 chrX 62019578 62020251 -100579679 - L1PA7 LINE L1 -3 6151 5472 1385 86 5 5 chrX 62020252 62020461 -100579469 + L1PA7 LINE L1 5272 5480 -674 485 151 0 0 chrX 62020461 62020547 -100579383 - L1PA8 LINE L1 -3320 2826 2741 22 0 0 0 chrX 62020560 62020582 -100579348 + AT_rich Low_complexity Low_complexity 1 22 0 998 191 76 2 chrX 62020583 62020871 -100579059 - L1MA4A LINE L1 -11 6292 5980 1852 148 3 19 chrX 62020879 62021196 -100578734 - AluJb SINE Alu 0 312 1 315 65 129 0 chrX 62021198 62021260 -100578670 - L1MA4 LINE L1 -231 6069 6000 22 70 0 0 chrX 62021449 62021492 -100578438 + AT_rich Low_complexity Low_complexity 1 43 0 2083 157 3 8 chrX 62021715 62022079 -100577851 - L1PB3 LINE L1 0 6211 5850 191 86 0 29 chrX 62022079 62022114 -100577816 + (TG)n Simple_repeat Simple_repeat 2 35 0 216 285 0 0 chrX 62022116 62022239 -100577691 + (TA)n Simple_repeat Simple_repeat 2 124 0 12919 218 46 39 chrX 62022241 62025233 -100574697 - L1PB3 LINE L1 -405 5806 2839 2393 127 51 14 chrX 62025233 62025667 -100574263 + LTR7 LTR ERV1 1 450 0 12919 218 46 39 chrX 62025667 62025731 -100574199 - L1PB3 LINE L1 -3372 2839 2777 3767 57 22 20 chrX 62025731 62026220 -100573710 - LTR2B LTR ERV1 0 490 1 12919 218 46 39 chrX 62026220 62027690 -100572240 - L1PB3 LINE L1 -3434 2777 1148 410 187 3 3 chrX 62027690 62027770 -100572160 - AluJ/FLAM SINE Alu -231 71 1 12919 218 46 39 chrX 62027770 62028916 -100571014 - L1PB3 LINE L1 -5063 1148 12 28 29 0 0 chrX 62028933 62028968 -100570962 + AT_rich Low_complexity Low_complexity 1 35 0 302 281 21 0 chrX 62029842 62029938 -100569992 - MER89-int LTR ERV1 -5813 988 891 1308 230 12 0 chrX 62030833 62031085 -100568845 - MER90 LTR ERV1 0 614 360 696 231 127 27 chrX 62031080 62031301 -100568629 - MER90 LTR ERV1 -361 253 11 * 782 255 124 32 chrX 62031400 62031787 -100568143 - L2 LINE L2 -192 3121 2695 281 185 15 0 chrX 62031860 62031925 -100568005 + GA-rich Low_complexity Low_complexity 1 66 0 6531 257 24 14 chrX 62031932 62034297 -100565633 - L1M4c LINE L1 -2119 4263 1915 1865 181 0 0 chrX 62034403 62034712 -100565218 - AluJo SINE Alu -1 311 3 261 0 0 0 chrX 62034844 62034873 -100565057 + (TG)n Simple_repeat Simple_repeat 2 30 0 653 264 39 6 chrX 62034882 62035124 -100564806 - L1M4c LINE L1 -4654 1909 1506 568 202 0 0 chrX 62035117 62035241 -100564689 + L1M4c LINE L1 1362 1485 -4899 * 1834 196 20 42 chrX 62035277 62035681 -100564249 - MSTD LTR MaLR 0 396 2 518 76 0 38 chrX 62035862 62035941 -100563989 - MSTA LTR MaLR -8 420 345 6673 157 10 2 chrX 62035954 62037914 -100562016 - L1MA2 LINE L1 0 6304 4329 3894 77 0 0 chrX 62037921 62038428 -100561502 - L1PA7 LINE L1 -55 6099 5593 3950 210 23 27 chrX 62038468 62038806 -100561124 - L1 LINE L1 -1908 5657 5319 2249 53 7 0 chrX 62038806 62039088 -100560842 - L1PA3 LINE L1 0 6155 5872 3950 210 23 27 chrX 62039088 62039965 -100559965 - L1 LINE L1 -2246 5319 4491 2082 134 0 56 chrX 62039972 62040168 -100559762 - L1PB1 LINE L1 -1 6150 5983 1988 154 0 0 chrX 62040168 62040473 -100559457 - AluSg SINE Alu -5 305 1 2082 134 0 56 chrX 62040473 62040650 -100559280 - L1PB1 LINE L1 -168 5983 5798 206 192 19 0 chrX 62040670 62040722 -100559208 + (TA)n Simple_repeat Simple_repeat 2 54 0 5841 176 50 2 chrX 62040751 62041095 -100558835 - L1PB1 LINE L1 -360 5791 5465 252 86 0 0 chrX 62041095 62041130 -100558800 + (TATTG)n Simple_repeat Simple_repeat 4 38 0 5841 176 50 2 chrX 62041130 62042567 -100557363 - L1PB1 LINE L1 -686 5465 3916 3816 211 25 17 chrX 62042552 62043709 -100556221 - L1 LINE L1 -3059 4506 3345 * 14704 39 3 0 chrX 62043718 62046359 -100553571 - L1PA4 LINE L1 -1 6154 3505 16304 174 37 15 chrX 62046361 62049631 -100550299 - L1 LINE L1 -4207 3358 17 1196 172 59 4 chrX 62049661 62049899 -100550031 - MSTB LTR MaLR -175 251 1 1524 177 41 10 chrX 62050392 62050686 -100549244 + MSTB LTR MaLR 1 303 -123 514 208 123 32 chrX 62051310 62051464 -100548466 - L2 LINE L2 0 3313 3146 345 287 234 0 chrX 62051471 62051638 -100548292 - MIR SINE MIR -42 220 15 404 333 80 10 chrX 62051729 62051929 -100548001 - MIR SINE MIR -13 249 37 212 309 73 64 chrX 62052862 62052972 -100546958 - MIR SINE MIR -132 130 20 591 207 0 9 chrX 62053406 62053517 -100546413 - MIR SINE MIR -115 147 38 622 265 18 13 chrX 62053862 62054118 -100545812 - L2 LINE L2 -559 2755 2533 1032 252 142 70 chrX 62054689 62055306 -100544624 - L2 LINE L2 -224 3089 2430 235 381 24 53 chrX 62055326 62055573 -100544357 - L2 LINE L2 -531 2783 2544 186 318 0 0 chrX 62055643 62055687 -100544243 + MIR SINE MIR 49 92 -170 288 264 94 28 chrX 62055716 62055822 -100544108 + MIR3 SINE MIR 85 197 -11 262 321 0 0 chrX 62056359 62056443 -100543487 - MIR3 SINE MIR -52 156 72 410 0 20 0 chrX 62056450 62056500 -100543430 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 283 271 0 0 chrX 62056502 62056572 -100543358 - MIR SINE MIR -130 132 63 275 299 12 6 chrX 62056853 62057021 -100542909 + GA-rich Low_complexity Low_complexity 1 169 0 1697 156 44 17 chrX 62057624 62057919 -100542011 + AluSx SINE Alu 1 303 -9 1861 205 42 8 chrX 62058113 62058494 -100541436 + MSTD LTR MaLR 3 396 0 292 331 25 16 chrX 62058601 62058722 -100541208 - MER5A DNA MER1_type -24 165 44 224 246 53 0 chrX 62058789 62058846 -100541084 + MIR SINE MIR 105 164 -98 252 0 0 0 chrX 62058897 62058925 -100541005 + (ATG)n Simple_repeat Simple_repeat 3 30 0 1484 100 5 5 chrX 62059836 62060046 -100539884 + L1PA15 LINE L1 5950 6159 -6 383 147 0 0 chrX 62060058 62060126 -100539804 - L1MA6 LINE L1 -37 6263 6196 24 53 0 0 chrX 62060149 62060187 -100539743 + AT_rich Low_complexity Low_complexity 1 38 0 2027 165 129 5 chrX 62060335 62060716 -100539214 + MSTA LTR MaLR 1 428 0 2098 156 5 0 chrX 62060716 62061088 -100538842 + MSTA-int LTR MaLR 1 374 -1277 1555 205 30 0 chrX 62061426 62061723 -100538207 + AluJo SINE Alu 6 311 -1 2255 189 74 19 chrX 62061760 62062289 -100537641 + L1PA16 LINE L1 5584 6141 -25 41877 43 1 2 chrX 62062313 62068471 -100531459 - L1PA4 LINE L1 -3 6152 1 371 232 40 10 chrX 62068478 62068577 -100531353 - MLT1A1 LTR MaLR -79 286 185 6281 179 64 7 chrX 62068631 62069857 -100530073 + MSTA-int LTR MaLR 357 1651 0 2258 145 114 5 chrX 62069857 62070243 -100529687 + MSTA LTR MaLR 1 428 0 1605 279 60 40 chrX 62070246 62070365 -100529565 + L1ME LINE L1 20 135 -5935 1807 182 0 17 chrX 62070365 62070661 -100529269 + AluJo SINE Alu 1 291 -21 1605 279 60 40 chrX 62070661 62071352 -100528578 + L1ME LINE L1 135 847 -5223 1005 203 139 32 chrX 62071412 62071722 -100528208 + MLT1A1 LTR MaLR 1 343 -22 435 105 5 16 chrX 62071738 62071826 -100528104 + MSTC LTR MaLR 309 409 0 710 284 62 32 chrX 62071838 62072373 -100527557 + L1ME LINE L1 904 1454 -4626 233 204 23 0 chrX 62072373 62072417 -100527513 - Tigger3(Golem) DNA MER2_type -2983 46 2 971 210 15 0 chrX 62072418 62072623 -100527307 + L1ME LINE L1 5361 5568 -594 323 234 80 23 chrX 62072664 62072833 -100527097 - L1ME LINE L1 -542 5579 5398 449 304 34 49 chrX 62072872 62073401 -100526529 - L1ME LINE L1 -1135 5011 4491 1944 154 39 0 chrX 62075460 62075790 -100524140 - MER2 DNA MER2_type 0 344 2 683 296 36 3 chrX 62075918 62076290 -100523640 - L1MC/D LINE L1 -448 5722 5370 11124 159 25 16 chrX 62076310 62079859 -100520071 - L1MA2 LINE L1 0 6304 2726 2842 118 23 10 chrX 62079868 62080349 -100519581 - L1MA3 LINE L1 -2 6303 5817 5299 135 26 0 chrX 62080357 62081283 -100518647 - L1MA2 LINE L1 0 7723 6774 6235 122 18 19 chrX 62081291 62081991 -100517939 - L1MA2 LINE L1 0 6304 5605 2396 104 0 0 chrX 62081991 62082299 -100517631 - AluSq SINE Alu -5 308 1 6235 122 18 19 chrX 62082299 62082777 -100517153 - L1MA2 LINE L1 -699 5605 4234 * 11758 204 26 10 chrX 62082776 62085651 -100514279 - L1MA2 LINE L1 -894 6671 3749 619 171 9 0 chrX 62085691 62085802 -100514128 - L1MA2 LINE L1 -2035 4111 4000 4653 138 43 2 chrX 62085816 62086776 -100513154 - L1MA2 LINE L1 -3821 3744 2744 23 54 0 0 chrX 62086777 62086814 -100513116 + AT_rich Low_complexity Low_complexity 1 37 0 1305 66 77 0 chrX 62087033 62087216 -100512714 - L1PA7 LINE L1 0 6154 5958 7473 184 11 4 chrX 62087216 62088557 -100511373 - L1MA2 LINE L1 -6034 1531 181 3730 73 2 51 chrX 62088805 62089356 -100510574 - L1PA8A LINE L1 -2 6129 5606 427 245 12 0 chrX 62089562 62089725 -100510205 - L1M4 LINE L1 -1595 4551 4387 844 193 0 0 chrX 62089760 62089905 -100510025 - FRAM SINE Alu -10 166 22 456 282 27 0 chrX 62090041 62090229 -100509701 - L1M4 LINE L1 -1955 4191 3999 448 298 68 31 chrX 62090224 62090577 -100509353 - L1M4 LINE L1 -2065 4081 3716 * 816 272 42 0 chrX 62090578 62090769 -100509161 + MIR SINE MIR 2 200 -62 232 67 0 0 chrX 62090769 62090799 -100509131 - MLT1E3 LTR MaLR 0 555 526 287 180 33 63 chrX 62090848 62090944 -100508986 - MLT1G3 LTR MaLR 0 590 501 420 233 108 94 chrX 62090977 62091181 -100508749 - MLT1G3 LTR MaLR -165 390 135 2017 136 0 0 chrX 62091181 62091490 -100508440 - AluSg SINE Alu 0 309 1 420 233 108 94 chrX 62091490 62091540 -100508390 - MLT1G3 LTR MaLR -420 135 87 * 499 248 66 36 chrX 62091537 62091937 -100507993 - MLT1E3 LTR MaLR -176 448 1 21 0 0 0 chrX 62092003 62092024 -100507906 + AT_rich Low_complexity Low_complexity 1 21 0 5589 147 49 0 chrX 62092064 62094175 -100505755 + L1PB1 LINE L1 10 2411 -4452 11528 190 1 8 chrX 62094175 62095793 -100504137 + L1PB1 LINE L1 3409 4994 -1873 2105 141 7 0 chrX 62095793 62096097 -100503833 - AluSx SINE Alu -6 306 1 11528 190 1 8 chrX 62096097 62097615 -100502315 + L1PB1 LINE L1 4994 6522 -345 2154 124 0 49 chrX 62097632 62097959 -100501971 + L1PB1 LINE L1 6498 6805 -62 2213 123 0 0 chrX 62097959 62098261 -100501669 + AluSg SINE Alu 9 310 0 2154 124 0 49 chrX 62098261 62098320 -100501610 + L1PB1 LINE L1 6805 6865 -2 248 197 61 24 chrX 62098557 62098673 -100501257 + L1MC/D LINE L1 5692 5813 -308 476 287 38 86 chrX 62098988 62099143 -100500787 + MIR3 SINE MIR 6 150 -58 551 211 5 108 chrX 62099143 62099337 -100500593 + MER5B DNA MER1_type 4 177 -1 476 287 38 86 chrX 62099337 62099390 -100500540 + MIR3 SINE MIR 150 204 -4 676 120 0 48 chrX 62100501 62100626 -100499304 - L1MA4 LINE L1 -4 6296 6178 607 282 115 13 chrX 62101409 62101643 -100498287 + MIR SINE MIR 5 262 0 332 305 35 77 chrX 62102400 62102685 -100497245 - L2 LINE L2 0 3313 3041 6387 143 19 11 chrX 62102712 62104304 -100495626 - L1MA2 LINE L1 0 6304 4696 6106 119 22 16 chrX 62104316 62105473 -100494457 - L1MA1 LINE L1 0 6302 5127 1806 189 12 12 chrX 62105453 62105871 -100494059 - L1MA1 LINE L1 -2527 3619 3202 * 1325 211 19 0 chrX 62105876 62106137 -100493793 + L1PA12 LINE L1 6 271 -7310 6168 126 18 18 chrX 62106246 62106945 -100492985 - L1MA2 LINE L1 0 6304 5607 2324 107 0 0 chrX 62106945 62107245 -100492685 - AluSq SINE Alu -13 300 1 6168 126 18 18 chrX 62107245 62107723 -100492207 - L1MA2 LINE L1 -697 5607 4234 * 11826 205 24 10 chrX 62107722 62110604 -100489326 - L1 LINE L1 -894 6671 3749 619 171 9 0 chrX 62110644 62110755 -100489175 - L1MA2 LINE L1 -2035 4111 4000 4484 143 47 4 chrX 62110769 62111727 -100488203 - L1 LINE L1 -3821 3744 2744 1305 66 77 0 chrX 62111984 62112167 -100487763 - L1PA7 LINE L1 0 6154 5958 7451 183 13 5 chrX 62112167 62113507 -100486423 - L1 LINE L1 -6034 1531 181 3730 73 2 51 chrX 62113755 62114306 -100485624 - L1PA8A LINE L1 -2 6129 5606 427 245 12 0 chrX 62114512 62114675 -100485255 - L1M4 LINE L1 -1595 4551 4387 844 193 0 0 chrX 62114710 62114855 -100485075 - FRAM SINE Alu -10 166 22 456 282 27 0 chrX 62114992 62115180 -100484750 - L1M4 LINE L1 -1955 4191 3999 448 298 68 31 chrX 62115175 62115528 -100484402 - L1M4 LINE L1 -2065 4081 3716 * 816 272 42 0 chrX 62115529 62115720 -100484210 + MIR SINE MIR 2 200 -62 232 67 0 0 chrX 62115720 62115750 -100484180 - MLT1E3 LTR MaLR 0 555 526 287 180 33 63 chrX 62115799 62115895 -100484035 - MLT1G3 LTR MaLR 0 590 501 420 233 108 94 chrX 62115928 62116132 -100483798 - MLT1G3 LTR MaLR -165 390 135 2004 139 0 0 chrX 62116132 62116456 -100483474 - AluSg SINE Alu 0 324 1 420 233 108 94 chrX 62116456 62116506 -100483424 - MLT1G3 LTR MaLR -420 135 87 * 499 253 66 36 chrX 62116503 62116903 -100483027 - MLT1E3 LTR MaLR -176 448 1 21 0 0 0 chrX 62116969 62116990 -100482940 + AT_rich Low_complexity Low_complexity 1 21 0 8797 186 139 1 chrX 62117030 62119141 -100480789 + L1PB1 LINE L1 10 2411 -4452 11198 191 1 14 chrX 62119141 62120778 -100479152 + L1PB1 LINE L1 3409 4987 -1880 2173 134 7 0 chrX 62120778 62121085 -100478845 - AluSx SINE Alu -3 309 1 11198 191 1 14 chrX 62121085 62122602 -100477328 + L1PB1 LINE L1 4987 6522 -345 2117 124 3 49 chrX 62122621 62122947 -100476983 + L1PB1 LINE L1 6498 6805 -62 2234 119 0 0 chrX 62122947 62123249 -100476681 + AluSg SINE Alu 9 310 0 2117 124 3 49 chrX 62123249 62123308 -100476622 + L1PB1 LINE L1 6805 6865 -2 228 288 123 23 chrX 62123359 62123661 -100476269 + L1ME LINE L1 5482 5813 -308 476 287 38 86 chrX 62123976 62124131 -100475799 + MIR3 SINE MIR 6 150 -58 551 211 5 108 chrX 62124131 62124325 -100475605 + MER5B DNA MER1_type 4 177 -1 476 287 38 86 chrX 62124325 62124378 -100475552 + MIR3 SINE MIR 150 204 -4 294 82 0 20 chrX 62125489 62125538 -100474392 - L1MA5A LINE L1 -4 6293 6246 * 1274 297 22 16 chrX 62125537 62125988 -100473942 + L1PA12 LINE L1 1191 1644 -5937 899 129 0 0 chrX 62126042 62126166 -100473764 + AluSq/x SINE Alu 1 124 -188 450 0 0 0 chrX 62126166 62126216 -100473714 + (TA)n Simple_repeat Simple_repeat 2 51 0 2019 132 0 27 chrX 62126217 62126512 -100473418 + AluSx SINE Alu 1 287 -25 10125 217 12 10 chrX 62126532 62127397 -100472533 + L1PA12 LINE L1 2433 3295 -4289 2258 137 45 33 chrX 62127397 62127819 -100472111 - MSTA LTR MaLR 0 428 2 10125 217 12 10 chrX 62127819 62129982 -100469948 + L1PA12 LINE L1 3295 5471 -2113 1035 227 25 0 chrX 62129981 62130267 -100469663 - L1 LINE L1 -3140 4425 4133 * 932 151 5 16 chrX 62130263 62130448 -100469482 - L1 LINE L1 -4577 2988 2806 * 5243 164 28 15 chrX 62130467 62131923 -100468007 - L1 LINE L1 -3435 4130 2658 1378 136 5 0 chrX 62131929 62132142 -100467788 + MER4B LTR ERV1 397 610 0 2221 113 98 13 chrX 62132162 62132622 -100467308 + MER4B-int LTR ERV1 21 563 -6035 346 110 12 73 chrX 62132682 62132764 -100467166 + MER4B-int LTR ERV1 736 812 -5786 221 0 35 0 chrX 62132777 62132806 -100467124 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1225 225 36 47 chrX 62132842 62133202 -100466728 + MER4B-int LTR ERV1 1845 2200 -4131 * 7048 138 41 43 chrX 62133199 62134726 -100465204 + MER4B-int LTR ERV1 196 1725 -5033 2285 107 3 0 chrX 62134726 62135016 -100464914 + AluSp SINE Alu 1 291 -22 7048 138 41 43 chrX 62135016 62135587 -100464343 + MER4B-int LTR ERV1 1725 2296 -4462 2071 141 0 3 chrX 62135587 62135877 -100464053 + AluSx SINE Alu 1 289 -23 7048 138 41 43 chrX 62135877 62136585 -100463345 + MER4B-int LTR ERV1 2296 3099 -3659 3246 141 6 19 chrX 62136569 62136718 -100463212 + MER4B-int LTR ERV1 3423 3572 -3186 * 1960 165 126 5 chrX 62136718 62137100 -100462830 - MSTA LTR MaLR 0 428 1 8224 191 28 7 chrX 62137100 62138717 -100461213 - MSTA-int LTR MaLR 0 1651 2 1104 178 162 31 chrX 62138719 62139040 -100460890 - MSTA LTR MaLR -1 363 1 3246 141 6 19 chrX 62139040 62139425 -100460505 + MER4B-int LTR ERV1 3572 3954 -2804 24946 77 5 4 chrX 62139427 62145588 -100454342 + L1PA5 LINE L1 11 6170 0 986 161 86 66 chrX 62145589 62145832 -100454098 + MER4B-int LTR ERV1 3939 4186 -2572 14507 131 42 12 chrX 62145837 62148172 -100451758 + MER4B-int LTR ERV1 4322 6727 -31 6232 167 99 134 chrX 62148176 62148196 -100451734 - L1M1 LINE L1 -5880 1685 1666 3152 144 71 12 chrX 62148196 62148772 -100451158 + MER4B LTR ERV1 1 610 0 6232 167 99 134 chrX 62148772 62149151 -100450779 - L1M1 LINE L1 -5899 1666 1275 770 119 9 0 chrX 62149151 62149260 -100450670 - MER51A LTR ERV1 -136 498 389 462 111 0 167 chrX 62149230 62149356 -100450574 - MER51B LTR ERV1 -272 105 1 * 6232 167 99 134 chrX 62149356 62150471 -100449459 - L1M1 LINE L1 -6386 1179 27 241 281 83 0 chrX 62150471 62150567 -100449363 + MLT1J1 LTR MaLR 319 422 -24 26 0 0 0 chrX 62150572 62150598 -100449332 + AT_rich Low_complexity Low_complexity 1 26 0 6463 188 59 10 chrX 62150973 62151875 -100448055 - L1MA9 LINE L1 -52 6260 5403 273 75 0 0 chrX 62151875 62151915 -100448015 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6463 188 59 10 chrX 62151915 62153439 -100446491 - L1MA9 LINE L1 -909 5403 3726 10539 190 28 11 chrX 62153455 62156743 -100443187 + L1PB4 LINE L1 2850 6188 0 466 206 137 2 chrX 62156746 62156928 -100443002 + L1MB1 LINE L1 2697 2902 -3947 24 0 0 0 chrX 62156954 62156978 -100442952 + AT_rich Low_complexity Low_complexity 1 24 0 6944 55 38 0 chrX 62157114 62158129 -100441801 - L1PA5 LINE L1 0 6154 5130 3853 205 50 6 chrX 62158131 62159263 -100440667 + L1MB1 LINE L1 5689 6869 -1 25 102 0 0 chrX 62159401 62159489 -100440441 + AT_rich Low_complexity Low_complexity 1 88 0 21 0 0 0 chrX 62159553 62159574 -100440356 + AT_rich Low_complexity Low_complexity 1 21 0 308 296 38 21 chrX 62160194 62160380 -100439550 + L1MDa LINE L1 1262 1450 -5090 8672 272 26 6 chrX 62160381 62163167 -100436763 + L1P LINE L1 1666 4508 -1638 2312 196 5 0 chrX 62163167 62163612 -100436318 + L1PA16 LINE L1 5716 6162 -4 315 288 29 71 chrX 62163619 62163684 -100436246 + L1MDa LINE L1 1355 1421 -5121 2240 186 24 7 chrX 62163684 62164103 -100435827 - MSTB LTR MaLR 0 426 1 315 288 29 71 chrX 62164103 62164207 -100435723 + L1MDa LINE L1 1421 1517 -5025 22 35 0 0 chrX 62164255 62164284 -100435646 + AT_rich Low_complexity Low_complexity 1 29 0 19469 143 10 91 chrX 62164308 62167867 -100432063 + L1PA7 LINE L1 12 3173 -2973 2122 108 29 16 chrX 62167867 62168174 -100431756 + AluY SINE Alu 1 311 0 19469 143 10 91 chrX 62168174 62168864 -100431066 + L1PA7 LINE L1 3173 3917 -2229 6579 74 16 3 chrX 62168866 62170384 -100429546 + L1PA7 LINE L1 4610 6137 -17 249 33 0 0 chrX 62170384 62170414 -100429516 + (TG)n Simple_repeat Simple_repeat 2 31 0 6579 74 16 3 chrX 62170414 62170433 -100429497 + L1PA7 LINE L1 6137 6154 0 326 325 76 14 chrX 62170788 62171277 -100428653 + L1MDa LINE L1 2199 2717 -4004 40675 67 4 7 chrX 62171417 62177094 -100422836 - L1P2 LINE L1 -494 5660 4 702 242 27 0 chrX 62177098 62177321 -100422609 - L1M4 LINE L1 -2996 3150 2922 687 207 0 7 chrX 62177336 62177471 -100422459 - AluJb SINE Alu -178 134 1 1822 244 34 28 chrX 62177472 62178141 -100421789 - L1M4 LINE L1 -3226 2920 2248 4204 117 39 38 chrX 62178147 62178883 -100421047 - L1PB3 LINE L1 -5 6149 5413 43517 43 2 0 chrX 62178907 62185051 -100414879 - L1PA2 LINE L1 -1 6154 3 3948 37 0 0 chrX 62185051 62185567 -100414363 - L1PB3 LINE L1 -727 5428 4913 472 174 257 20 chrX 62185609 62185846 -100414084 + Charlie5 DNA MER1_type 43 2624 0 325 209 0 0 chrX 62185979 62186046 -100413884 + MIR SINE MIR 183 249 -13 662 69 10 0 chrX 62186711 62186812 -100413118 + (TCCTG)n Simple_repeat Simple_repeat 4 105 0 2050 104 4 11 chrX 62186812 62187092 -100412838 - AluSp SINE Alu -35 278 1 24 0 0 0 chrX 62187199 62187223 -100412707 + AT_rich Low_complexity Low_complexity 1 24 0 296 225 154 18 chrX 62187291 62187460 -100412470 - HAL1 LINE L1 -92 2415 2224 265 270 80 22 chrX 62187574 62187711 -100412219 - HAL1b LINE L1 -457 891 747 227 278 42 14 chrX 62187759 62187831 -100412099 - MIR SINE MIR -187 75 2 374 324 54 14 chrX 62188977 62189125 -100410805 - MIR SINE MIR -106 156 3 1408 213 46 46 chrX 62189176 62189593 -100410337 + L1ME3A LINE L1 5744 6160 -10 1084 241 24 8 chrX 62189797 62190050 -100409880 + MIR SINE MIR 6 262 0 1555 201 25 3 chrX 62190135 62190419 -100409511 - AluJo SINE Alu -22 290 1 525 288 49 56 chrX 62190419 62190680 -100409250 - L1ME LINE L1 -406 5764 5506 1970 49 0 0 chrX 62190945 62191189 -100408741 + L1PA4 LINE L1 5770 6013 -142 501 230 214 9 chrX 62391194 62391424 -100208506 - MLT1H1 LTR MaLR -291 264 1 1333 164 16 0 chrX 62392026 62392270 -100207660 + L1MA4 LINE L1 6047 6294 -6 32 26 0 0 chrX 62392275 62392314 -100207616 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chrX 62392338 62392359 -100207571 + AT_rich Low_complexity Low_complexity 1 21 0 583 290 161 0 chrX 62392368 62392592 -100207338 + MIR SINE MIR 2 261 -1 405 180 23 192 chrX 62392906 62392966 -100206964 + MIR3 SINE MIR 66 134 -74 2501 205 71 43 chrX 62392966 62393507 -100206423 + MLT1E2 LTR MaLR 2 564 -62 1789 167 3 3 chrX 62393507 62393824 -100206106 - AluJo SINE Alu 0 319 3 2501 205 71 43 chrX 62393824 62393887 -100206043 + MLT1E2 LTR MaLR 564 624 -2 405 180 23 192 chrX 62393887 62393998 -100205932 + MIR3 SINE MIR 134 208 0 2909 224 57 30 chrX 62394675 62395224 -100204706 - L1ME1 LINE L1 -5 6161 5581 2297 144 98 2 chrX 62395224 62395641 -100204289 + MSTB2 LTR MaLR 1 457 0 2909 224 57 30 chrX 62395641 62395901 -100204029 - L1ME1 LINE L1 -585 5581 5330 235 71 48 0 chrX 62395902 62395944 -100203986 + T-rich Low_complexity Low_complexity 2 45 0 2302 102 0 0 chrX 62395970 62396273 -100203657 + AluSc SINE Alu 1 303 -6 435 114 0 0 chrX 62396297 62396367 -100203563 - L1PA15 LINE L1 -5 6160 6091 2908 127 35 35 chrX 62396387 62396937 -100202993 - L1MA9 LINE L1 -1 6311 5762 3808 168 17 96 chrX 62396938 62397060 -100202870 + L1MA9 LINE L1 5400 5530 -782 2142 107 14 0 chrX 62397060 62397350 -100202580 - AluSq SINE Alu -19 294 1 3808 168 17 96 chrX 62397350 62398217 -100201713 + L1MA9 LINE L1 5530 6311 -1 399 261 31 0 chrX 62398215 62398345 -100201585 - L1MDa LINE L1 -3807 2733 2600 * 5116 162 50 10 chrX 62398350 62399443 -100200487 - L1MA9 LINE L1 0 6312 5176 556 171 17 0 chrX 62399452 62399569 -100200361 - L1MDa LINE L1 -3936 2604 2486 9203 172 58 57 chrX 62399591 62399603 -100200327 - L1MC3 LINE L1 0 7785 7775 1423 194 27 47 chrX 62399603 62399902 -100200028 - AluJo SINE Alu -9 293 1 9203 172 58 57 chrX 62399902 62402048 -100197882 - L1MC3 LINE L1 -10 7775 5625 1208 190 74 40 chrX 62402046 62402398 -100197532 - L1MDa LINE L1 -4765 1775 1412 * 189 0 0 0 chrX 62402404 62402425 -100197505 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 988 199 0 0 chrX 62402442 62402608 -100197322 - FRAM SINE Alu -5 171 6 384 149 21 53 chrX 62402615 62402709 -100197221 - L1MDa LINE L1 -5118 1422 1332 598 197 20 9 chrX 62402709 62402840 -100197090 - MLT1C LTR MaLR 0 467 257 877 235 68 38 chrX 62402840 62403119 -100196811 + L1MC5 LINE L1 7504 7800 -161 234 81 0 0 chrX 62403119 62403156 -100196774 + (TG)n Simple_repeat Simple_repeat 1 37 0 877 235 68 38 chrX 62403156 62403271 -100196659 + L1MC5 LINE L1 7800 7910 -51 674 185 74 6 chrX 62403438 62403600 -100196330 + MER53 DNA DNA 1 173 -16 4638 69 7 0 chrX 62403600 62404210 -100195720 - L1PA8 LINE L1 -2 6170 5557 2080 97 32 0 chrX 62404210 62404643 -100195287 + L1PA8 LINE L1 5121 5563 -568 * 4450 184 15 28 chrX 62404634 62404938 -100194992 - L1 LINE L1 -937 5209 4903 1900 167 0 7 chrX 62404938 62405231 -100194699 - AluSx SINE Alu -21 291 1 4450 184 15 28 chrX 62405231 62405732 -100194198 - L1 LINE L1 -1243 4903 4417 2013 105 43 14 chrX 62405732 62406009 -100193921 - AluSx SINE Alu -27 285 1 4450 184 15 28 chrX 62406009 62406221 -100193709 - L1 LINE L1 -1729 4417 4204 1934 182 5 90 chrX 62406223 62406684 -100193246 - L1M4 LINE L1 -1120 5026 4618 1628 179 32 0 chrX 62406684 62406964 -100192966 - AluJb SINE Alu -23 289 1 1934 182 5 90 chrX 62406964 62407056 -100192874 - L1M4 LINE L1 -1528 4618 4520 220 310 80 40 chrX 62407948 62408048 -100191882 + MIR3 SINE MIR 79 182 -26 417 291 101 16 chrX 62408206 62408395 -100191535 + HAL1b LINE L1 1128 1332 -16 9712 25 17 185 chrX 62409716 62411378 -100188552 - SVA Other Other -2 1384 2 3620 246 59 89 chrX 62412020 62412201 -100187729 + L1ME1 LINE L1 38 223 -6173 2342 87 3 3 chrX 62412201 62412510 -100187420 + AluSc SINE Alu 1 309 0 3620 246 59 89 chrX 62412510 62413976 -100185954 + L1ME1 LINE L1 223 1636 -4760 2317 150 81 5 chrX 62413978 62414383 -100185547 + L1MB3 LINE L1 5537 5978 -205 2231 115 13 0 chrX 62414383 62414688 -100185242 + AluSx SINE Alu 1 309 -3 2317 150 81 5 chrX 62414688 62414715 -100185215 + L1MB3 LINE L1 5978 6002 -181 183 91 45 23 chrX 62414717 62414761 -100185169 + GA-rich Low_complexity Low_complexity 1 45 0 664 117 25 17 chrX 62414761 62414881 -100185049 + L1MB2 LINE L1 5953 6073 -98 2639 212 71 15 chrX 62414920 62415664 -100184266 + L1ME1 LINE L1 1615 2400 -3996 1360 209 70 43 chrX 62415663 62415728 -100184202 + L1ME1 LINE L1 4689 4751 -1464 * 5174 77 3 0 chrX 62415728 62416416 -100183514 + L1PA14 LINE L1 5470 6159 -2 1360 209 70 43 chrX 62416416 62416794 -100183136 + L1ME1 LINE L1 4751 5144 -1071 1846 162 3 22 chrX 62416890 62417204 -100182726 + AluJo SINE Alu 1 308 -4 2900 220 79 31 chrX 62417498 62418389 -100181541 + L1ME1 LINE L1 5244 6330 -73 282 116 0 0 chrX 62418389 62418432 -100181498 + (TA)n Simple_repeat Simple_repeat 1 43 0 2900 220 79 31 chrX 62418432 62418509 -100181421 + L1ME1 LINE L1 6330 6402 -1 270 197 167 0 chrX 62421137 62421203 -100178727 - L2 LINE L2 -39 3233 3157 2340 85 0 7 chrX 62422362 62422667 -100177263 - AluSg SINE Alu -7 303 1 1253 227 117 72 chrX 62422808 62422994 -100176936 - L2 LINE L2 -1 3312 3136 1495 214 40 0 chrX 62422994 62423321 -100176609 - MER58B DNA MER1_type -1 340 1 1253 227 117 72 chrX 62423321 62423605 -100176325 - L2 LINE L2 -177 3136 2821 1459 129 12 51 chrX 62423605 62423861 -100176069 - MSTB2 LTR MaLR 0 457 212 298 287 65 37 chrX 62424182 62424290 -100175640 + L2 LINE L2 3184 3294 -19 22 0 0 0 chrX 62424723 62424745 -100175185 + AT_rich Low_complexity Low_complexity 1 22 0 189 170 85 43 chrX 62425597 62425644 -100174286 - L2 LINE L2 -4 3309 3261 24 53 0 0 chrX 62425703 62425741 -100174189 + AT_rich Low_complexity Low_complexity 1 38 0 873 360 45 8 chrX 62425801 62426198 -100173732 + L3 LINE CR1 661 1072 -505 1054 198 119 11 chrX 62426200 62426478 -100173452 - MER2 DNA MER2_type -37 308 1 410 244 0 0 chrX 62426481 62426559 -100173371 + Tigger5 DNA MER2_type 2 79 -2244 334 182 0 0 chrX 62426560 62426615 -100173315 - Tigger5 DNA MER2_type -5 2318 2264 * 535 146 0 0 chrX 62426611 62426693 -100173237 + Tigger5 DNA MER2_type 2242 2323 0 1283 319 68 9 chrX 62426697 62427152 -100172778 + L3 LINE CR1 1070 1551 -26 1072 211 27 54 chrX 62427298 62427596 -100172334 - L1ME1 LINE L1 -5 6161 5872 14063 68 6 1 chrX 62427617 62429423 -100170507 - L1P LINE L1 -4329 1817 2 645 212 0 15 chrX 62429426 62429558 -100170372 - FLAM_A SINE Alu -3 130 1 5635 106 45 9 chrX 62429559 62430465 -100169465 + Tigger3b DNA MER2_type 293 1231 0 3299 177 51 12 chrX 62430465 62431629 -100168301 - L1M3 LINE L1 -398 5851 4633 2003 100 4 11 chrX 62431868 62432176 -100167754 - AluSx SINE Alu 0 310 5 4204 24 0 10 chrX 62432220 62432720 -100167210 - L1PA3 LINE L1 -1 6154 5660 192 40 0 0 chrX 62432821 62432846 -100167084 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1123 160 9 38 chrX 62433090 62433302 -100166628 - MER3 DNA MER1_type -3 206 1 1694 180 0 14 chrX 62433887 62434171 -100165759 - AluJb SINE Alu -32 280 1 294 279 175 8 chrX 62434210 62434450 -100165480 - L1M3 LINE L1 -1857 4358 4079 769 217 6 13 chrX 62434470 62434627 -100165303 - MLT1C LTR MaLR -1 466 311 297 295 0 0 chrX 62434633 62434728 -100165202 - L1M3 LINE L1 -3396 2819 2725 562 161 0 0 chrX 62434743 62434830 -100165100 - Tigger5 DNA MER2_type 0 2323 2237 351 268 0 12 chrX 62434847 62434929 -100165001 + Tigger5 DNA MER2_type 8 88 -2235 340 214 12 12 chrX 62434951 62435035 -100164895 - Tigger5 DNA MER2_type -5 2318 2235 941 279 64 34 chrX 62435040 62435576 -100164354 - L1M3 LINE L1 -3493 2722 2203 2238 123 3 0 chrX 62435576 62435884 -100164046 - AluSx SINE Alu -3 309 1 941 279 64 34 chrX 62435884 62435945 -100163985 - L1M3 LINE L1 -4012 2203 2145 6281 169 25 2 chrX 62435946 62437364 -100162566 - L1MC2 LINE L1 0 6344 4892 403 252 75 13 chrX 62437458 62437617 -100162313 - L1MEd LINE L1 -5039 1080 912 562 278 57 20 chrX 62437818 62438066 -100161864 - L1MEd LINE L1 -5270 849 593 225 263 40 40 chrX 62438505 62438581 -100161349 - L1MEd LINE L1 -5984 135 60 27 29 0 0 chrX 62439913 62439947 -100159983 + AT_rich Low_complexity Low_complexity 1 34 0 1240 205 110 16 chrX 62440019 62440433 -100159497 - L1ME1 LINE L1 -63 6103 5722 1225 120 0 0 chrX 62440532 62440690 -100159240 - AluSg/x SINE Alu -23 289 132 1094 214 82 65 chrX 62440701 62440906 -100159024 - L1ME1 LINE L1 -505 5661 5461 5067 90 6 3 chrX 62440906 62441605 -100158325 + L1PA10 LINE L1 5466 6166 -2 1094 214 82 65 chrX 62441605 62441800 -100158130 - L1ME1 LINE L1 -705 5461 5254 569 54 0 201 chrX 62441820 62441890 -100158040 - L1MA8 LINE L1 -3 6288 6262 5512 38 1 0 chrX 62441890 62442545 -100157385 - L1PA5 LINE L1 -2 6152 5497 569 54 0 201 chrX 62442545 62442623 -100157307 - L1MA8 LINE L1 -29 6262 6170 751 165 8 0 chrX 62442625 62442746 -100157184 - AluJ SINE Alu -8 304 183 970 134 0 8 chrX 62442749 62442883 -100157047 - AluJ SINE Alu -179 133 1 6352 155 49 14 chrX 62442884 62445060 -100154870 - L1MA8 LINE L1 -112 7139 4876 1160 196 83 6 chrX 62445058 62445394 -100154536 - L1MA8 LINE L1 -2537 4569 4208 * 40394 37 21 3 chrX 62445373 62451410 -100148520 - L1PA3 LINE L1 0 7115 964 362 176 50 42 chrX 62451410 62451487 -100148443 - L1MA8 LINE L1 -2837 4269 4189 2128 137 13 3 chrX 62451487 62451793 -100148137 - AluSx SINE Alu -1 311 3 362 176 50 42 chrX 62451793 62451834 -100148096 - L1MA8 LINE L1 -2917 4189 4150 * 1630 253 33 2 chrX 62451830 62452347 -100147583 - L1MA8 LINE L1 -4257 2850 2318 6566 75 29 0 chrX 62452374 62453395 -100146535 - L1PA11 LINE L1 0 6174 5154 6670 180 52 72 chrX 62453395 62455299 -100144631 - L1MA8 LINE L1 -5164 1866 2 6272 207 56 56 chrX 62455303 62456355 -100143575 - L1MEc LINE L1 -883 5332 4281 2062 129 0 35 chrX 62456355 62456672 -100143258 - AluSx SINE Alu -1 311 6 6272 207 56 56 chrX 62456672 62457729 -100142201 - L1MEc LINE L1 -1933 4282 3223 1236 162 0 5 chrX 62457748 62457945 -100141985 - AluJb SINE Alu -74 238 43 632 252 8 8 chrX 62457945 62458179 -100141751 - L1MEc LINE L1 -2969 3246 3013 620 139 20 86 chrX 62458693 62458844 -100141086 - MLT1D LTR MaLR -2 503 363 2540 224 62 20 chrX 62458854 62459848 -100140082 - L1MEc LINE L1 -3195 3020 2016 411 253 46 23 chrX 62459895 62459974 -100139956 - L1MC/D LINE L1 -2001 5807 5731 2531 65 0 0 chrX 62459974 62460282 -100139648 - AluY SINE Alu -3 308 1 411 253 46 23 chrX 62460282 62460376 -100139554 - L1MC/D LINE L1 -2077 5731 5630 401 243 264 14 chrX 62461176 62461324 -100138606 + MIR SINE MIR 8 192 -70 193 300 67 0 chrX 62461622 62461682 -100138248 - L2 LINE L2 -6 3266 3203 2116 127 7 3 chrX 62462070 62462361 -100137569 - AluSx SINE Alu -15 297 6 2536 227 97 15 chrX 62462754 62463432 -100136498 + L2 LINE L2 1406 2139 -1175 * 3563 230 46 143 chrX 62463423 62463936 -100135994 - L2 LINE L2 -1944 1370 809 738 183 41 53 chrX 62463936 62464105 -100135825 + MER96 DNA MER1_type? 9 175 0 3563 230 46 143 chrX 62464105 62464266 -100135664 - L2 LINE L2 -2505 809 634 2053 94 91 0 chrX 62464266 62464552 -100135378 + AluSq SINE Alu 2 313 0 3563 230 46 143 chrX 62464552 62465201 -100134729 - L2 LINE L2 -2680 634 23 25 0 0 0 chrX 62466145 62466170 -100133760 + AT_rich Low_complexity Low_complexity 1 25 0 1011 202 0 15 chrX 62466447 62466645 -100133285 + MIR SINE MIR 7 201 -61 271 114 0 0 chrX 62466646 62466690 -100133240 - U5 snRNA snRNA -72 44 1 289 206 44 0 chrX 62466691 62466759 -100133171 + MIR SINE MIR 191 261 -1 1123 223 7 13 chrX 62467323 62467633 -100132297 + L1MC5 LINE L1 7604 7911 -50 316 342 67 17 chrX 62467676 62467796 -100132134 + L2 LINE L2 3147 3272 0 422 307 6 62 chrX 62468091 62468270 -100131660 + MIR3 SINE MIR 34 202 -6 27 49 0 0 chrX 62468689 62468730 -100131200 + AT_rich Low_complexity Low_complexity 1 41 0 246 32 0 0 chrX 62468730 62468761 -100131169 + (TA)n Simple_repeat Simple_repeat 1 31 0 2412 97 0 0 chrX 62468762 62469072 -100130858 - AluSg SINE Alu 0 310 1 5167 134 68 16 chrX 62469077 62470029 -100129901 - L1MC1 LINE L1 -11 6322 5321 2288 62 16 52 chrX 62470189 62470496 -100129434 + AluY SINE Alu 1 296 -15 9262 179 31 50 chrX 62470524 62472617 -100127313 - MER21-int LTR ERV1 -55 4136 2083 1235 158 18 0 chrX 62472617 62472845 -100127085 - L1PB4 LINE L1 -143 6013 5782 496 106 49 16 chrX 62472845 62472968 -100126962 + (TA)n Simple_repeat Simple_repeat 1 127 0 909 114 18 18 chrX 62472970 62473137 -100126793 - L1MCa LINE L1 -4508 1918 1752 4092 93 38 8 chrX 62473150 62473781 -100126149 - L1MA3 LINE L1 -3 6302 5653 19376 135 38 20 chrX 62473781 62477190 -100122740 - L1M1 LINE L1 -4080 3485 17 8389 144 37 29 chrX 62477192 62478151 -100121779 - L1MCa LINE L1 -4742 1684 703 1616 194 7 11 chrX 62478151 62478458 -100121472 - AluJb SINE Alu 0 306 1 8389 144 37 29 chrX 62478458 62479161 -100120769 - L1MCa LINE L1 -5723 703 7 186 233 0 96 chrX 62479198 62479271 -100120659 + MIR3 SINE MIR 114 179 -29 585 158 0 30 chrX 62480058 62480191 -100119739 + CT-rich Low_complexity Low_complexity 4 132 0 277 346 103 6 chrX 62481264 62481420 -100118510 + MIR SINE MIR 34 204 -58 2580 50 0 0 chrX 62481553 62481853 -100118077 - AluY SINE Alu -11 300 1 1300 206 24 18 chrX 62481895 62482225 -100117705 + L1ME3A LINE L1 5831 6162 -8 1321 169 134 0 chrX 62482721 62482851 -100117079 - AluJo SINE Alu -16 296 185 192 40 0 0 chrX 62482851 62482876 -100117054 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1321 169 134 0 chrX 62482876 62483006 -100116924 - AluJo SINE Alu -127 185 1 344 302 0 0 chrX 62484021 62484107 -100115823 - MIR3 SINE MIR -15 193 108 303 224 212 0 chrX 62485794 62485879 -100114051 - L2 LINE L2 -8 3264 3162 15986 28 1 6 chrX 62486391 62488110 -100111820 - L1P LINE L1 -784 5362 3662 5868 42 0 1 chrX 62488110 62488777 -100111153 + SVA Other Other 721 1386 0 15986 28 1 6 chrX 62488777 62489987 -100109943 - L1P LINE L1 -2484 3662 2447 6796 25 1 0 chrX 62489994 62490793 -100109137 + L1PA3 LINE L1 5356 6155 0 231 209 0 45 chrX 62491016 62491083 -100108847 + MER58 DNA MER1_type 1 181 -160 193 85 0 43 chrX 62491097 62491144 -100108786 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 368 209 0 0 chrX 62491154 62491221 -100108709 + MER58 DNA MER1_type 2353 2419 -1 4336 175 42 46 chrX 62491234 62492124 -100107806 - L1MB8 LINE L1 -2 6245 5341 1811 136 4 0 chrX 62492124 62492381 -100107549 - AluSx SINE Alu -22 290 33 4336 175 42 46 chrX 62492381 62493222 -100106708 - L1MB8 LINE L1 -906 5341 4498 * 4470 249 33 21 chrX 62493196 62494928 -100105002 - L1MB8 LINE L1 -2652 3563 1854 2284 100 0 10 chrX 62494928 62495227 -100104703 + AluSq SINE Alu 1 296 -17 4470 249 33 21 chrX 62495227 62495332 -100104598 - L1MB8 LINE L1 -4361 1854 1744 2149 123 56 11 chrX 62495332 62495691 -100104239 - THE1C LTR MaLR 0 375 1 4470 249 33 21 chrX 62495691 62495723 -100104207 - L1MB8 LINE L1 -4471 1744 1714 * 6460 229 85 27 chrX 62495717 62497199 -100102731 - L1M4c LINE L1 -4436 2702 1307 471 35 0 0 chrX 62497199 62497256 -100102674 + (TG)n Simple_repeat Simple_repeat 2 58 0 6460 229 85 27 chrX 62497256 62497707 -100102223 - L1M4c LINE L1 -5831 1307 884 232 24 24 48 chrX 62497707 62497749 -100102181 + (AGATG)n Simple_repeat Simple_repeat 2 42 0 6460 229 85 27 chrX 62497749 62498228 -100101702 - L1M4c LINE L1 -6254 884 10 1987 153 0 6 chrX 62498680 62498994 -100100936 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 62499105 62499140 -100100790 + AT_rich Low_complexity Low_complexity 1 35 0 2028 116 3 7 chrX 62499264 62499596 -100100334 + AluSp SINE Alu 1 331 0 613 268 30 4 chrX 62499706 62499937 -100099993 - L1M4 LINE L1 -2167 3979 3743 1872 150 7 0 chrX 62500499 62500793 -100099137 + AluSx SINE Alu 9 304 -8 210 180 0 34 chrX 62500911 62501000 -100098930 + (TA)n Simple_repeat Simple_repeat 1 86 0 1912 132 81 35 chrX 62501142 62501361 -100098569 - L1MB4 LINE L1 -7 6173 5929 893 189 12 6 chrX 62501361 62501525 -100098405 - FRAM SINE Alu -1 165 1 1912 132 81 35 chrX 62501525 62501675 -100098255 - L1MB4 LINE L1 -251 5929 5787 2163 134 27 24 chrX 62501676 62502048 -100097882 - THE1C LTR MaLR 0 375 3 10446 98 48 4 chrX 62502050 62503563 -100096367 - THE1C-int LTR MaLR 0 1580 1 7511 190 49 40 chrX 62503579 62504239 -100095691 - L1MB4 LINE L1 -621 5559 4906 2242 109 7 0 chrX 62504239 62504542 -100095388 - AluSx SINE Alu -7 305 1 7511 190 49 40 chrX 62504542 62506006 -100093924 - L1MB4 LINE L1 -1274 4906 3405 2754 13 0 13 chrX 62506006 62506315 -100093615 - AluYb8 SINE Alu -13 305 1 7511 190 49 40 chrX 62506315 62506379 -100093551 - L1MB4 LINE L1 -2775 3405 3343 1404 104 24 0 chrX 62506448 62506660 -100093270 - L1PB4 LINE L1 -532 5624 5408 3337 136 2 9 chrX 62506663 62507206 -100092724 + L1PB4 LINE L1 5617 6155 -1 310 221 12 12 chrX 62507216 62507302 -100092628 - MER31-int LTR ERV1 -2204 2732 2647 1973 94 0 0 chrX 62507303 62507547 -100092383 + AluSx SINE Alu 37 280 -32 378 0 0 0 chrX 62507549 62507591 -100092339 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 344 232 36 9 chrX 62507695 62507807 -100092123 - MER31-int LTR ERV1 -2351 2585 2471 1056 197 93 23 chrX 62507986 62508394 -100091536 + Charlie1 DNA MER1_type 46 2761 0 2312 103 0 3 chrX 62508717 62509018 -100090912 + AluSg SINE Alu 3 302 -8 1613 176 0 14 chrX 62509043 62509322 -100090608 + AluJo SINE Alu 37 311 -1 24 0 0 0 chrX 62509686 62509710 -100090220 + AT_rich Low_complexity Low_complexity 1 24 0 4426 144 40 8 chrX 62509711 62510786 -100089144 - L1MA3 LINE L1 0 6305 5175 2526 50 0 28 chrX 62510786 62511106 -100088824 - AluY SINE Alu 0 311 1 2257 79 0 4 chrX 62511271 62511551 -100088379 + AluSq SINE Alu 31 309 -4 344 270 24 103 chrX 62511565 62511817 -100088113 - MER31-int LTR ERV1 -3650 1286 1055 2234 96 10 0 chrX 62512285 62512577 -100087353 + AluSx SINE Alu 1 295 -17 500 181 20 5 chrX 62512577 62512690 -100087240 - LTR37A LTR ERV1 -24 437 301 360 222 28 14 chrX 62513557 62513629 -100086301 + L2 LINE L2 3150 3222 -50 233 261 15 0 chrX 62513644 62513709 -100086221 + (TA)n Simple_repeat Simple_repeat 2 67 0 1126 169 17 146 chrX 62514580 62514999 -100084931 - MLT1A1 LTR MaLR 0 365 1 1102 275 119 11 chrX 62515050 62515707 -100084223 + L2 LINE L2 2566 3308 -5 21 57 0 0 chrX 62516466 62516501 -100083429 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chrX 62517292 62517314 -100082616 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7508 30 16 0 chrX 62517314 62518357 -100081573 - L1PA4 LINE L1 -16 6139 5092 2330 233 42 18 chrX 62518501 62518994 -100080936 + L1ME3 LINE L1 2675 3194 -2952 2197 106 0 0 chrX 62518994 62519303 -100080627 + AluSx SINE Alu 1 309 0 2330 233 42 18 chrX 62519303 62519547 -100080383 + L1ME3 LINE L1 3194 3431 -2715 236 125 0 0 chrX 62519562 62519594 -100080336 + U2 snRNA snRNA 1 32 -156 44277 39 1 1 chrX 62519754 62525906 -100074024 + L1PA3 LINE L1 2 6152 -3 1345 251 71 33 chrX 62525914 62526057 -100073873 + L1ME3 LINE L1 3562 3698 -2448 2366 101 0 0 chrX 62526057 62526365 -100073565 - AluSx SINE Alu -3 309 2 1345 251 71 33 chrX 62526365 62526767 -100073163 + L1ME3 LINE L1 3698 4128 -2018 257 341 138 7 chrX 62526868 62527006 -100072924 - L3b LINE CR1 -308 1275 1120 265 299 43 43 chrX 62527011 62527128 -100072802 + MIR SINE MIR 30 146 -62 1760 220 118 34 chrX 62527277 62527897 -100072033 + L1MC3 LINE L1 5732 5813 -353 187 103 51 0 chrX 62528512 62528551 -100071379 + (TATG)n Simple_repeat Simple_repeat 2 42 0 2313 101 7 0 chrX 62528627 62528924 -100071006 + AluSg SINE Alu 1 299 -11 1154 198 29 35 chrX 62528943 62529257 -100070673 + L1ME3 LINE L1 4297 4608 -1538 1502 179 3 85 chrX 62529262 62529602 -100070328 + AluJo SINE Alu 1 312 0 2446 196 75 28 chrX 62529603 62529863 -100070067 + L1ME3 LINE L1 5049 5295 -867 2255 104 3 0 chrX 62529863 62530160 -100069770 + AluSp SINE Alu 1 298 -15 2446 196 75 28 chrX 62530160 62530723 -100069207 + L1ME3 LINE L1 5295 5922 -240 * 4757 177 35 45 chrX 62530721 62532136 -100067794 - L1MB8 LINE L1 0 6178 4750 2184 126 7 0 chrX 62532136 62532446 -100067484 - AluSx SINE Alu 0 312 1 4757 177 35 45 chrX 62532446 62532817 -100067113 - L1MB8 LINE L1 -1428 4750 4377 2054 150 0 3 chrX 62532817 62533124 -100066806 - AluSx SINE Alu -4 308 3 4757 177 35 45 chrX 62533124 62533232 -100066698 - L1MB8 LINE L1 -1801 4377 4314 597 140 170 0 chrX 62533232 62533352 -100066578 + FLAM_C SINE Alu 1 137 0 4757 177 35 45 chrX 62533352 62533479 -100066451 - L1MB8 LINE L1 -1864 4314 4187 4201 214 71 21 chrX 62533508 62534714 -100065216 + L1M4 LINE L1 2466 3732 -2414 676 223 30 56 chrX 62534725 62534922 -100065008 + L1ME3 LINE L1 5963 6154 -8 816 161 8 0 chrX 62537370 62537494 -100062436 - FLAM_A SINE Alu -8 134 10 226 234 0 0 chrX 62537494 62537541 -100062389 - L1MC4 LINE L1 -76 7966 7920 501 104 123 57 chrX 62538630 62538736 -100061194 - L1MB8 LINE L1 -2 6176 6064 7141 115 23 15 chrX 62538765 62540264 -100059666 - L1MA3 LINE L1 0 7724 6212 * 11678 133 17 7 chrX 62540249 62541884 -100058046 - L1MA3 LINE L1 -5799 1766 112 8169 26 0 4 chrX 62541884 62542909 -100057021 - L1PA4 LINE L1 -3 6152 5128 11678 133 17 7 chrX 62542909 62543010 -100056920 - L1MA3 LINE L1 -7453 112 13 3881 175 49 23 chrX 62543010 62544133 -100055797 - L1MB7 LINE L1 -111 6073 4929 268 223 19 87 chrX 62544136 62544239 -100055691 + MIR SINE MIR 108 203 -59 7259 114 46 63 chrX 62544420 62545083 -100054847 + Tigger3b DNA MER2_type 2 675 -2353 2109 147 0 0 chrX 62545083 62545390 -100054540 - AluSx SINE Alu -5 307 1 7259 114 46 63 chrX 62545390 62545444 -100054486 + Tigger3b DNA MER2_type 675 728 -2300 2123 100 10 10 chrX 62545444 62545733 -100054197 - AluSx SINE Alu -1 311 23 7259 114 46 63 chrX 62545733 62545784 -100054146 + Tigger3b DNA MER2_type 728 778 -2250 1785 138 14 44 chrX 62545784 62546081 -100053849 - AluJb SINE Alu -24 288 1 7259 114 46 63 chrX 62546081 62546561 -100053369 + Tigger3b DNA MER2_type 778 1230 -1 31 0 0 0 chrX 62547070 62547101 -100052829 + AT_rich Low_complexity Low_complexity 1 31 0 2595 58 0 3 chrX 62547101 62547413 -100052517 - AluY SINE Alu 0 311 1 431 288 28 80 chrX 62547659 62547871 -100052059 - MIR SINE MIR -27 235 35 2370 160 11 6 chrX 62547871 62548234 -100051696 - MLT1A1 LTR MaLR 0 365 1 1926 136 22 125 chrX 62548450 62548533 -100051397 - L1MD1 LINE L1 0 6242 6152 1969 109 0 11 chrX 62548533 62548808 -100051122 - AluSx SINE Alu -8 304 33 1926 136 22 125 chrX 62548808 62549120 -100050810 - L1MD1 LINE L1 -90 6152 5897 1552 123 123 11 chrX 62549120 62549380 -100050550 - AluJo SINE Alu -23 289 1 1926 136 22 125 chrX 62549380 62549438 -100050492 - L1MD1 LINE L1 -345 5897 5835 487 151 0 0 chrX 62549436 62549509 -100050421 + L1MB3 LINE L1 5889 5961 -222 * 25 0 0 0 chrX 62549806 62549831 -100050099 + AT_rich Low_complexity Low_complexity 1 25 0 1045 178 89 9 chrX 62549832 62550046 -100049884 + L1MB3 LINE L1 5946 6176 -7 1384 198 54 22 chrX 62550061 62550375 -100049555 - L1MDa LINE L1 -5361 1179 856 * 1414 203 59 7 chrX 62550371 62550677 -100049253 - L1MDa LINE L1 -6218 322 1 429 201 228 47 chrX 62550868 62550979 -100048951 + MER5A DNA MER1_type 8 98 -91 2269 109 3 0 chrX 62550979 62551273 -100048657 + AluSx SINE Alu 1 295 -17 180 0 0 0 chrX 62551273 62551293 -100048637 + (TA)n Simple_repeat Simple_repeat 2 21 0 429 201 228 47 chrX 62551293 62551329 -100048601 + MER5A DNA MER1_type 97 183 -6 297 307 38 21 chrX 62551480 62551618 -100048312 - MIR3 SINE MIR -15 193 50 842 134 0 24 chrX 62551678 62551805 -100048125 - FLAM_C SINE Alu -19 124 1 429 182 8 25 chrX 62552708 62552829 -100047101 + CT-rich Low_complexity Low_complexity 2 120 0 287 346 91 38 chrX 62552886 62553227 -100046703 + L2 LINE L2 1147 1505 -1809 648 271 103 18 chrX 62553355 62553684 -100046246 + L1M4 LINE L1 4490 4846 -1300 618 228 20 27 chrX 62553800 62553949 -100045981 + MIR SINE MIR 5 152 -110 766 147 0 0 chrX 62553949 62554058 -100045872 + AluJo SINE Alu 26 134 -178 320 229 105 0 chrX 62554068 62554173 -100045757 + MIR SINE MIR 147 262 0 877 165 0 0 chrX 62554406 62554539 -100045391 + FLAM_C SINE Alu 1 133 0 1819 179 0 3 chrX 62554556 62554846 -100045084 - AluJb SINE Alu -21 291 3 398 99 56 0 chrX 62554849 62554920 -100045010 - L1MC3 LINE L1 -787 6998 6924 * 2726 155 33 84 chrX 62554915 62555555 -100044375 + L1MB7 LINE L1 5566 6172 -12 961 294 72 52 chrX 62555885 62556196 -100043734 + L2 LINE L2 2393 2719 -595 2566 66 0 0 chrX 62556196 62556501 -100043429 - AluSc SINE Alu -4 305 1 961 294 72 52 chrX 62556501 62556672 -100043258 + L2 LINE L2 2719 2885 -429 614 307 108 47 chrX 62556914 62557234 -100042696 + L2 LINE L2 2265 2564 -750 2300 84 0 0 chrX 62557234 62557556 -100042374 - AluY SINE Alu 0 322 1 2420 63 7 23 chrX 62557556 62557859 -100042071 - AluSp SINE Alu -15 298 1 614 307 108 47 chrX 62557859 62558025 -100041905 + L2 LINE L2 2563 2783 -531 580 243 7 7 chrX 62558092 62558228 -100041702 + MER103 DNA DNA 31 166 0 1549 137 17 0 chrX 62558493 62558734 -100041196 - L1MB7 LINE L1 -19 6165 5921 320 295 150 56 chrX 62558802 62559036 -100040894 - L2 LINE L2 -1 3271 3016 186 103 0 0 chrX 62559039 62559068 -100040862 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 431 252 78 17 chrX 62559069 62559184 -100040746 - L2 LINE L2 -14 3258 3137 647 298 152 40 chrX 62561562 62561687 -100038243 - L3 LINE CR1 -3 1574 1464 2138 118 0 26 chrX 62561687 62561991 -100037939 + AluSx SINE Alu 1 296 -16 647 298 152 40 chrX 62561991 62562352 -100037578 - L3 LINE CR1 -113 1464 967 6271 172 112 29 chrX 62562384 62563715 -100036215 - L1MC4 LINE L1 0 8042 6578 2414 103 0 0 chrX 62563715 62564026 -100035904 - AluSx SINE Alu -1 311 1 6271 172 112 29 chrX 62564026 62564156 -100035774 - L1MC4 LINE L1 -1464 6578 6460 662 284 56 93 chrX 62564397 62564712 -100035218 + L2 LINE L2 2931 3233 -39 1999 145 0 3 chrX 62564712 62565009 -100034921 - AluJb SINE Alu -16 296 1 662 284 56 93 chrX 62565009 62565048 -100034882 + L2 LINE L2 3233 3272 0 1859 173 0 23 chrX 62565115 62565421 -100034509 - AluJo SINE Alu -13 299 1 2415 81 10 0 chrX 62565448 62565758 -100034172 + AluSp SINE Alu 1 313 0 507 262 36 18 chrX 62565786 62565954 -100033976 - L3 LINE CR1 -797 780 610 521 238 19 69 chrX 62565984 62566144 -100033786 - L2 LINE L2 -1 3312 3161 757 326 77 64 chrX 62566150 62566549 -100033381 - L3 LINE CR1 -998 579 170 2460 65 0 3 chrX 62566549 62566843 -100033087 + AluY SINE Alu 1 293 -18 757 326 77 64 chrX 62566843 62566977 -100032953 - L3 LINE CR1 -1407 170 39 2235 86 3 33 chrX 62567470 62567773 -100032157 + AluSp SINE Alu 1 294 -19 477 188 5 183 chrX 62567946 62568148 -100031782 - MIR SINE MIR -48 214 49 1884 176 0 3 chrX 62568153 62568449 -100031481 + AluJb SINE Alu 1 295 -17 2074 131 7 0 chrX 62568736 62569033 -100030897 + AluSx SINE Alu 1 299 -13 40419 74 6 7 chrX 62569041 62575194 -100024736 + L1PA5 LINE L1 11 6154 0 288 0 0 0 chrX 62575215 62575247 -100024683 + (TG)n Simple_repeat Simple_repeat 1 32 0 2178 100 0 0 chrX 62575247 62575527 -100024403 - AluSq SINE Alu -33 280 1 2423 71 0 3 chrX 62575704 62575998 -100023932 - AluSc SINE Alu -16 293 1 476 165 13 0 chrX 62576221 62576300 -100023630 - MER116 DNA Mariner 0 80 1 831 136 8 0 chrX 62576665 62576790 -100023140 + FAM SINE Alu 18 143 -42 180 0 0 0 chrX 62576806 62576826 -100023104 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 260 161 32 43 chrX 62576854 62576947 -100022983 + (TTATA)n Simple_repeat Simple_repeat 5 96 0 2320 89 3 0 chrX 62576949 62577241 -100022689 - AluSp SINE Alu -20 293 1 255 125 0 0 chrX 62577577 62577617 -100022313 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1832 107 0 0 chrX 62577808 62578050 -100021880 + AluSx SINE Alu 15 256 -56 442 300 136 22 chrX 62578081 62578482 -100021448 - L2 LINE L2 -221 3051 2614 2323 117 0 0 chrX 62578499 62578840 -100021090 - AluSg SINE Alu 0 341 1 363 259 19 46 chrX 62578892 62579000 -100020930 + L2 LINE L2 3159 3263 -50 316 105 53 35 chrX 62579089 62579146 -100020784 + AluSc SINE Alu 100 148 -151 1511 126 180 8 chrX 62579184 62579439 -100020491 + AluY SINE Alu 1 299 -12 801 275 49 12 chrX 62579551 62579801 -100020129 + MIR SINE MIR 3 262 0 355 277 30 0 chrX 62580921 62581022 -100018908 - MIR3 SINE MIR -2 206 103 285 304 114 79 chrX 62581021 62581426 -100018504 - L2 LINE L2 -5 3267 2849 * 389 291 139 74 chrX 62581424 62581733 -100018197 + L2 LINE L2 2960 3288 -25 477 244 92 17 chrX 62582392 62582511 -100017419 - L2 LINE L2 -20 3252 3125 399 218 152 132 chrX 62582565 62582683 -100017247 + MIR SINE MIR 14 139 -123 2218 114 13 0 chrX 62582683 62582991 -100016939 + AluSx SINE Alu 1 312 0 399 218 152 132 chrX 62582991 62583069 -100016861 + MIR SINE MIR 139 214 -48 1834 133 3 18 chrX 62583250 62583536 -100016394 + AluJb SINE Alu 1 282 -30 228 140 65 0 chrX 62587466 62587559 -100012371 + (TA)n Simple_repeat Simple_repeat 1 99 0 283 191 0 0 chrX 62588430 62588477 -100011453 - L2 LINE L2 -5 3308 3262 282 87 0 0 chrX 62588870 62588916 -100011014 + (CA)n Simple_repeat Simple_repeat 2 47 0 284 258 66 50 chrX 62588952 62589134 -100010796 - L2 LINE L2 -6 3307 3123 225 108 0 0 chrX 62593978 62594015 -100005915 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 980 191 0 0 chrX 62594016 62594173 -100005757 - FRAM SINE Alu -23 153 1 342 0 0 0 chrX 62594175 62594213 -100005717 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 4829 183 144 109 chrX 62594278 62594398 -100005532 - L1MDa LINE L1 -4526 2014 1900 1559 145 11 52 chrX 62594398 62594667 -100005263 - AluJo SINE Alu -54 258 1 4829 183 144 109 chrX 62594667 62594970 -100004960 - L1MDa LINE L1 -4640 1900 1609 2072 159 0 0 chrX 62594970 62595265 -100004665 - AluJb SINE Alu -17 295 1 4829 183 144 109 chrX 62595265 62595639 -100004291 - L1MDa LINE L1 -4931 1609 1250 705 126 0 110 chrX 62595639 62595666 -100004264 - FLAM_A SINE Alu -181 130 102 2401 78 7 0 chrX 62595666 62595962 -100003968 + AluSg SINE Alu 1 298 -12 705 126 0 110 chrX 62595962 62596061 -100003869 - FLAM_A SINE Alu -209 102 18 4829 183 144 109 chrX 62596061 62597080 -100002850 - L1MDa LINE L1 -5290 1250 1 1513 164 27 8 chrX 62597172 62597428 -100002502 + Tigger7 DNA MER2_type 1 261 -472 678 124 0 0 chrX 62597434 62597531 -100002399 + Tigger7 DNA MER2_type 2391 2487 0 2500 241 65 12 chrX 62597565 62598301 -100001629 - L2 LINE L2 -231 3082 2303 190 352 44 101 chrX 62598296 62598523 -100001407 - L2 LINE L2 -82 3190 2977 * 415 268 219 0 chrX 62598577 62598740 -100001190 + MIR SINE MIR 58 258 -4 206 200 0 0 chrX 62598981 62599016 -100000914 + polypyrimidine Low_complexity Low_complexity 2 36 0 1566 287 115 43 chrX 62603584 62603956 -99995974 - L3 LINE CR1 -107 1470 1126 1351 138 195 4 chrX 62603956 62604084 -99995846 - AluJb SINE Alu -19 293 191 189 0 0 0 chrX 62604084 62604105 -99995825 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1351 138 195 4 chrX 62604105 62604222 -99995708 - AluJb SINE Alu -121 191 1 1566 287 115 43 chrX 62604222 62604655 -99995275 - L3 LINE CR1 -451 1126 607 1583 158 62 7 chrX 62604740 62605012 -99994918 + AluJo SINE Alu 5 291 -21 23 33 0 0 chrX 62605012 62605042 -99994888 + AT_rich Low_complexity Low_complexity 1 30 0 312 263 12 50 chrX 62605055 62605135 -99994795 - L3 LINE CR1 -1058 519 443 692 306 55 45 chrX 62605234 62605675 -99994255 + L2 LINE L2 2778 3313 0 474 327 155 33 chrX 62606489 62606978 -99992952 + L2 LINE L2 857 1405 -1909 1313 186 55 4 chrX 62606994 62607230 -99992700 - MIR SINE MIR -5 257 10 2082 137 14 8 chrX 62607338 62607696 -99992234 - MER47A DNA MER2_type 0 366 7 282 29 0 0 chrX 62607696 62607731 -99992199 + (TG)n Simple_repeat Simple_repeat 2 36 0 404 208 33 17 chrX 62607735 62607855 -99992075 + L1ME4a LINE L1 5992 6113 -8 249 33 0 0 chrX 62613374 62613404 -99986526 + (TG)n Simple_repeat Simple_repeat 2 31 0 1268 101 0 0 chrX 62613516 62613675 -99986255 + AluSx SINE Alu 1 159 -153 714 143 0 0 chrX 62613747 62613852 -99986078 + FRAM SINE Alu 27 131 -45 505 229 52 0 chrX 62614998 62615094 -99984836 + MIR SINE MIR 48 148 -114 2589 50 0 3 chrX 62617171 62617469 -99982461 - AluY SINE Alu -14 297 1 2362 110 0 0 chrX 62618599 62618907 -99981023 - AluSx SINE Alu -4 308 1 1230 42 0 7 chrX 62618908 62619051 -99980879 - AluSq/x SINE Alu -171 142 1 846 272 65 139 chrX 62619054 62619642 -99980288 + L3 LINE CR1 363 993 -584 1985 110 64 3 chrX 62619642 62619924 -99980006 + AluJb SINE Alu 7 305 -7 846 272 65 139 chrX 62619924 62620103 -99979827 + L3 LINE CR1 993 1071 -506 2535 83 3 0 chrX 62620103 62620415 -99979515 + AluSq SINE Alu 1 313 0 846 272 65 139 chrX 62620415 62620443 -99979487 + L3 LINE CR1 1071 1100 -477 1816 157 24 7 chrX 62620646 62620940 -99978990 - AluJo SINE Alu -13 299 1 278 161 0 18 chrX 62621143 62621199 -99978731 - MIR SINE MIR -26 236 182 1129 324 64 27 chrX 62621386 62621944 -99977986 - L3 LINE CR1 -18 1559 894 377 267 27 40 chrX 62622047 62622197 -99977733 - L1ME4a LINE L1 -293 5828 5681 561 319 87 6 chrX 62622199 62622475 -99977455 + L2 LINE L2 2773 3069 -244 333 188 14 0 chrX 62622484 62622553 -99977377 - FLAM SINE Alu -9 124 55 630 229 33 52 chrX 62622676 62622890 -99977040 + L1ME3 LINE L1 5939 6154 -8 784 161 8 0 chrX 62625337 62625461 -99974469 - FLAM_A SINE Alu -8 134 10 452 104 123 57 chrX 62626597 62626703 -99973227 - L1MB8 LINE L1 -2 6176 6064 6561 116 23 17 chrX 62626731 62628233 -99971697 - L1MA3 LINE L1 0 7724 6212 * 10674 134 15 1 chrX 62628218 62629845 -99970085 - L1MA3 LINE L1 -5799 1766 116 31743 68 5 5 chrX 62629853 62636000 -99963930 - L1PA4 LINE L1 -3 6152 11 2086 131 7 0 chrX 62636008 62636305 -99963625 - AluSx SINE Alu -13 299 1 1896 176 0 3 chrX 62636592 62636888 -99963042 - AluJb SINE Alu -17 295 1 425 188 5 183 chrX 62636893 62637095 -99962835 + MIR SINE MIR 49 214 -48 2260 86 3 33 chrX 62637268 62637571 -99962359 - AluSp SINE Alu -19 294 1 604 330 62 70 chrX 62638064 62638198 -99961732 + L3 LINE CR1 39 173 -1404 2484 65 0 3 chrX 62638198 62638492 -99961438 - AluY SINE Alu -18 293 1 604 330 62 70 chrX 62638492 62638842 -99961088 + L3 LINE CR1 173 519 -1058 468 268 49 55 chrX 62642613 62642777 -99957153 - MIR3 SINE MIR -7 201 39 2282 112 0 10 chrX 62643026 62643331 -99956599 + AluSx SINE Alu 1 302 -10 2396 103 0 0 chrX 62644075 62644387 -99955543 + AluSx SINE Alu 1 312 0 2233 127 0 0 chrX 62644635 62644942 -99954988 + AluSx SINE Alu 1 307 -5 223 224 0 20 chrX 62645511 62645560 -99954370 - L3 LINE CR1 -33 1544 1497 200 239 0 0 chrX 62645559 62645605 -99954325 + MIR3 SINE MIR 156 201 -7 * 210 228 35 0 chrX 62645607 62645664 -99954266 - L3 LINE CR1 -339 1238 1180 2368 95 0 0 chrX 62645928 62646223 -99953707 + AluSc SINE Alu 1 295 -14 2365 93 3 0 chrX 62646287 62646578 -99953352 + AluSp SINE Alu 1 292 -21 221 341 30 15 chrX 62646762 62646897 -99953033 - L2 LINE L2 -217 3055 2919 23 0 0 0 chrX 62647191 62647214 -99952716 + AT_rich Low_complexity Low_complexity 1 23 0 205 327 0 0 chrX 62647655 62647710 -99952220 + (TG)n Simple_repeat Simple_repeat 2 56 0 270 0 0 0 chrX 62650213 62650243 -99949687 + (TTAAA)n Simple_repeat Simple_repeat 2 31 0 1776 159 10 32 chrX 62650999 62651307 -99948623 - AluJo SINE Alu -11 301 1 319 259 28 84 chrX 62651314 62651339 -99948591 + MER5A DNA MER1_type 55 80 -109 2449 56 16 16 chrX 62651339 62651643 -99948287 + AluY SINE Alu 1 304 -7 319 259 28 84 chrX 62651643 62651760 -99948170 + MER5A DNA MER1_type 80 189 0 291 335 177 10 chrX 62651761 62651964 -99947966 + MIR SINE MIR 20 256 -6 573 232 5 28 chrX 62652040 62652240 -99947690 - L3 LINE CR1 -73 1504 1268 197 279 221 10 chrX 62652317 62652421 -99947509 - L2 LINE L2 -1009 2305 2180 250 325 26 32 chrX 62652974 62653128 -99946802 - L2 LINE L2 -1555 1759 1607 2223 102 17 0 chrX 62654976 62655269 -99944661 - AluSx SINE Alu -14 298 1 491 242 98 41 chrX 62655274 62655518 -99944412 + L2 LINE L2 3056 3313 0 683 225 16 53 chrX 62655537 62655679 -99944251 - L1ME LINE L1 -460 5661 5526 2079 133 0 10 chrX 62655679 62655980 -99943950 - AluJb SINE Alu -14 298 1 683 225 16 53 chrX 62655980 62656024 -99943906 - L1ME LINE L1 -595 5526 5482 417 342 11 64 chrX 62656048 62656235 -99943695 - L3 LINE CR1 -940 637 461 473 284 149 23 chrX 62656236 62656451 -99943479 + L3 LINE CR1 1255 1496 -81 216 0 0 0 chrX 62656619 62656643 -99943287 + (TG)n Simple_repeat Simple_repeat 2 25 0 897 143 0 0 chrX 62656716 62656849 -99943081 - FLAM_C SINE Alu 0 133 1 749 182 65 18 chrX 62656899 62657069 -99942861 + MER5B DNA MER1_type 1 178 0 316 266 82 64 chrX 62657198 62657305 -99942625 + MIR SINE MIR 16 120 -142 941 148 12 35 chrX 62657305 62657474 -99942456 - FRAM SINE Alu 0 166 2 316 266 82 64 chrX 62657474 62657572 -99942358 + MIR SINE MIR 120 224 -38 410 263 56 78 chrX 62657715 62657764 -99942166 - MIR3 SINE MIR -15 193 144 2072 123 46 12 chrX 62657764 62658088 -99941842 + MER1B DNA MER1_type 3 337 0 410 263 56 78 chrX 62658088 62658217 -99941713 - MIR3 SINE MIR -64 144 19 2232 98 23 0 chrX 62658796 62659101 -99940829 - AluSx SINE Alu 0 312 1 2381 85 3 7 chrX 62659460 62659767 -99940163 + AluSp SINE Alu 7 312 -1 337 273 62 51 chrX 62660405 62660535 -99939395 + MIR SINE MIR 28 162 -100 2344 91 3 3 chrX 62660535 62660833 -99939097 - AluSp SINE Alu -15 298 1 337 273 62 51 chrX 62660833 62660878 -99939052 + MIR SINE MIR 162 205 -57 2071 151 3 3 chrX 62661212 62661524 -99938406 + AluSx SINE Alu 1 312 0 227 204 0 0 chrX 62661593 62661642 -99938288 + (CAT)n Simple_repeat Simple_repeat 3 51 0 1344 167 98 8 chrX 62664093 62664338 -99935592 - AluSx SINE Alu -45 267 1 2061 144 3 7 chrX 62667232 62667537 -99932393 + AluSx SINE Alu 5 308 -4 1021 172 39 0 chrX 62667538 62667741 -99932189 + L1M4 LINE L1 3576 3786 -2360 2067 145 0 16 chrX 62667741 62668058 -99931872 + AluSx SINE Alu 1 312 0 428 241 0 0 chrX 62668063 62668150 -99931780 + MER63 DNA MER1_type 664 750 -310 298 156 16 31 chrX 62668550 62668614 -99931316 - MER4D LTR ERV1 -50 853 791 341 129 0 16 chrX 62668635 62668697 -99931233 + (TTTCC)n Simple_repeat Simple_repeat 4 64 0 2301 75 14 0 chrX 62668715 62668997 -99930933 - AluY SINE Alu -25 286 1 2318 97 0 10 chrX 62668998 62669298 -99930632 - AluSx SINE Alu -15 297 1 238 222 111 14 chrX 62669299 62669371 -99930559 - MIR SINE MIR -17 245 167 278 275 33 33 chrX 62669570 62669661 -99930269 + MIR SINE MIR 17 107 -155 618 99 0 11 chrX 62669713 62669804 -99930126 - HY4 scRNA scRNA 0 93 4 254 315 43 0 chrX 62669816 62669908 -99930022 + MIR SINE MIR 131 226 -36 27 87 0 0 chrX 62670706 62670775 -99929155 + AT_rich Low_complexity Low_complexity 1 69 0 2303 104 0 0 chrX 62670824 62671122 -99928808 - AluSx SINE Alu -14 298 1 682 243 53 0 chrX 62671180 62671369 -99928561 + L1ME1 LINE L1 2294 2492 -3654 * 5555 189 102 88 chrX 62671344 62671595 -99928335 + L1MEc LINE L1 2066 2312 -3903 1699 183 46 0 chrX 62671595 62671880 -99928050 + AluJo SINE Alu 1 298 -14 5555 189 102 88 chrX 62671880 62671920 -99928010 + L1MEc LINE L1 2312 2350 -3865 1969 161 0 0 chrX 62671920 62672200 -99927730 + AluJb SINE Alu 1 280 -32 744 71 0 0 chrX 62672201 62672300 -99927630 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 5555 189 102 88 chrX 62672300 62673128 -99926802 + L1MEc LINE L1 2350 3165 -3050 680 60 0 0 chrX 62673128 62673211 -99926719 + AluY SINE Alu 203 285 -26 5555 189 102 88 chrX 62673211 62673225 -99926705 + L1MEc LINE L1 3165 3177 -3038 207 0 0 0 chrX 62673225 62673248 -99926682 + (TTA)n Simple_repeat Simple_repeat 3 25 0 5555 189 102 88 chrX 62673248 62673290 -99926640 + L1MEc LINE L1 3177 3217 -2998 320 77 0 0 chrX 62673290 62673342 -99926588 - L1MB4 LINE L1 0 6180 6129 5555 189 102 88 chrX 62673342 62673454 -99926476 + L1MEc LINE L1 3217 3326 -2889 714 197 0 0 chrX 62673454 62673571 -99926359 - FLAM_C SINE Alu -15 118 2 5555 189 102 88 chrX 62673571 62674102 -99925828 + L1MEc LINE L1 3326 3848 -2367 2135 153 11 29 chrX 62674102 62674481 -99925449 + L1PA15 LINE L1 5794 6165 0 5555 189 102 88 chrX 62674481 62674887 -99925043 + L1MEc LINE L1 3848 4422 -1793 2394 200 60 26 chrX 62674892 62675473 -99924457 + L1ME1 LINE L1 5566 6166 0 3798 193 133 39 chrX 62675482 62676514 -99923416 + L1ME1 LINE L1 3915 4849 -1386 2182 107 3 3 chrX 62676514 62676803 -99923127 - AluSx SINE Alu -23 289 1 3798 193 133 39 chrX 62676803 62676825 -99923105 + L1ME1 LINE L1 4849 4868 -1367 1865 163 0 20 chrX 62676825 62677120 -99922810 - AluJb SINE Alu -23 289 1 3798 193 133 39 chrX 62677120 62678001 -99921929 + L1ME1 LINE L1 4868 6051 -184 747 148 6 77 chrX 62678108 62678207 -99921723 + L1MA10 LINE L1 6177 6261 -73 2197 119 10 0 chrX 62678207 62678501 -99921429 - AluSq SINE Alu -16 297 1 747 148 6 77 chrX 62678501 62678570 -99921360 + L1MA10 LINE L1 6261 6333 -1 241 248 62 12 chrX 62679725 62679867 -99920063 - MIR3 SINE MIR -5 203 3 1258 126 22 22 chrX 62679998 62680221 -99919709 + L1PA16 LINE L1 5937 6159 -7 1811 88 0 12 chrX 62680561 62680810 -99919120 - AluSg SINE Alu -28 282 37 198 254 32 16 chrX 62680829 62680892 -99919038 + L2 LINE L2 2247 2310 -1004 492 274 34 0 chrX 62681042 62681159 -99918771 - L2 LINE L2 -6 3307 3187 4522 170 42 42 chrX 62681208 62682081 -99917849 - L1MB8 LINE L1 0 6178 5307 2220 86 3 7 chrX 62682081 62682382 -99917548 - AluSp SINE Alu -11 302 3 4522 170 42 42 chrX 62682382 62682482 -99917448 - L1MB8 LINE L1 -871 5307 5209 895 138 0 0 chrX 62682482 62682612 -99917318 - FLAM_C SINE Alu 0 133 4 4522 170 42 42 chrX 62682612 62682846 -99917084 - L1MB8 LINE L1 -969 5209 4977 2096 99 3 7 chrX 62682846 62683138 -99916792 - AluSx SINE Alu -21 291 1 4522 170 42 42 chrX 62683138 62683719 -99916211 - L1MB8 LINE L1 -1201 4977 4382 257 207 37 104 chrX 62687253 62687388 -99912542 - MER5A DNA MER1_type -37 152 27 561 243 105 15 chrX 62687587 62687738 -99912192 - L1MC4a LINE L1 -95 6026 5890 1515 96 44 9 chrX 62687738 62687987 -99911943 + AluSx SINE Alu 45 301 0 561 243 105 15 chrX 62687987 62688144 -99911786 - L1MC4a LINE L1 -231 5890 5686 878 110 7 27 chrX 62688149 62688295 -99911635 - FLAM_C SINE Alu 0 143 1 331 284 29 0 chrX 62688300 62688402 -99911528 - L1MC4a LINE L1 -444 5677 5573 561 176 0 0 chrX 62689454 62689539 -99910391 + AluJ/FLAM SINE Alu 5 89 -223 198 209 0 0 chrX 62690761 62690804 -99909126 + G-rich Low_complexity Low_complexity 3 45 0 205 246 16 0 chrX 62693427 62693488 -99906442 + (CCG)n Simple_repeat Simple_repeat 1 62 0 481 239 103 42 chrX 62694355 62694519 -99905411 - MIR SINE MIR -29 179 54 2103 82 0 4 chrX 62694519 62694822 -99905108 + AluSc SINE Alu 1 302 0 481 239 103 42 chrX 62694822 62694875 -99905055 - MIR SINE MIR -154 54 6 907 150 0 20 chrX 62694894 62695041 -99904889 - U4 snRNA snRNA -1 144 1 250 211 0 42 chrX 62696263 62696334 -99903596 + C-rich Low_complexity Low_complexity 2 69 0 517 265 49 60 chrX 62697465 62697665 -99902265 - MIR3 SINE MIR 0 208 8 811 189 0 7 chrX 62699036 62699189 -99900741 + FRAM SINE Alu 22 173 -3 490 273 168 74 chrX 62699195 62699595 -99900335 - L2 LINE L2 -27 3286 2778 2411 76 0 0 chrX 62699595 62699897 -99900033 - AluSq SINE Alu -9 304 3 490 273 168 74 chrX 62699897 62700028 -99899902 - L2 LINE L2 -535 2778 2661 231 344 0 44 chrX 62700102 62700192 -99899738 - L3 LINE CR1 -63 1514 1429 2172 107 0 10 chrX 62700193 62700503 -99899427 - AluSx SINE Alu -5 307 1 220 350 50 65 chrX 62700608 62700991 -99898939 - L2 LINE L2 -411 2903 2527 2028 60 0 0 chrX 62701190 62701441 -99898489 + AluY SINE Alu 46 296 -15 276 222 86 0 chrX 62701446 62701527 -99898403 - L3 LINE CR1 -356 1221 1134 348 280 143 93 chrX 62702165 62702240 -99897690 + L3 LINE CR1 650 720 -857 2110 108 0 7 chrX 62702240 62702535 -99897395 + AluSx SINE Alu 2 294 -18 348 280 143 93 chrX 62702535 62702780 -99897150 + L3 LINE CR1 720 986 -591 2061 109 0 16 chrX 62703027 62703331 -99896599 + AluSx SINE Alu 6 304 -8 1708 174 0 7 chrX 62703457 62703745 -99896185 + AluJo SINE Alu 1 286 -26 274 189 0 19 chrX 62703825 62703878 -99896052 + MIR3 SINE MIR 154 205 -3 23 0 0 0 chrX 62703923 62703946 -99895984 + AT_rich Low_complexity Low_complexity 1 23 0 2182 98 0 13 chrX 62704398 62704714 -99895216 + AluSx SINE Alu 1 312 0 1525 258 90 42 chrX 62705392 62705552 -99894378 + L1ME4a LINE L1 4855 5006 -1115 1731 168 0 16 chrX 62705552 62705868 -99894062 + AluJo SINE Alu 1 311 -1 1525 258 90 42 chrX 62705868 62706030 -99893900 + L1ME4a LINE L1 5006 5159 -962 2129 106 3 3 chrX 62706030 62706331 -99893599 + AluSx SINE Alu 1 301 -11 1525 258 90 42 chrX 62706331 62706473 -99893457 + L1ME4a LINE L1 5159 5293 -828 432 0 0 0 chrX 62706473 62706521 -99893409 + (CA)n Simple_repeat Simple_repeat 1 48 0 1525 258 90 42 chrX 62706521 62707261 -99892669 + L1ME4a LINE L1 5293 6121 0 922 331 34 37 chrX 62707290 62707698 -99892232 - L3 LINE CR1 -935 642 236 1717 132 0 0 chrX 62707845 62708095 -99891835 - AluSx SINE Alu -62 250 1 1656 158 7 4 chrX 62708207 62708480 -99891450 + AluJb SINE Alu 1 274 -38 656 10 0 41 chrX 62708481 62708578 -99891352 + (GGAAA)n Simple_repeat Simple_repeat 3 95 0 1037 191 135 82 chrX 62708611 62708893 -99891037 + AluJo SINE Alu 2 298 -4 378 281 108 22 chrX 62708953 62709092 -99890838 - MIR3 SINE MIR -22 186 36 1990 116 3 0 chrX 62709322 62709639 -99890291 + AluSq SINE Alu 1 318 0 3262 140 25 51 chrX 62709931 62710211 -99889719 + L1MB8 LINE L1 5550 5836 -342 2210 107 0 25 chrX 62710211 62710529 -99889401 + AluSx SINE Alu 1 310 -2 3262 140 25 51 chrX 62710529 62710878 -99889052 + L1MB8 LINE L1 5836 6163 -15 2133 84 39 0 chrX 62710909 62711194 -99888736 + AluSx SINE Alu 1 296 -16 3864 142 66 21 chrX 62711416 62712161 -99887769 + L1MB8 LINE L1 5367 6144 -34 2441 69 0 3 chrX 62712461 62712766 -99887164 - AluSc SINE Alu -5 304 1 592 263 27 43 chrX 62712869 62713055 -99886875 + MIR SINE MIR 5 187 -75 253 269 115 39 chrX 62713098 62713176 -99886754 - L2 LINE L2 -35 3237 3154 839 146 7 14 chrX 62714178 62714322 -99885608 + FLAM_C SINE Alu 1 143 0 757 139 107 0 chrX 62714471 62714593 -99885337 + AluJo SINE Alu 2 136 -176 1924 134 0 0 chrX 62714593 62714876 -99885054 + AluJb SINE Alu 1 283 -29 2439 54 0 0 chrX 62714898 62715194 -99884736 + AluY SINE Alu 1 296 -15 383 220 76 25 chrX 62715194 62715312 -99884618 + L1MB8 LINE L1 6054 6177 -1 190 242 154 33 chrX 62715643 62715734 -99884196 + MIR3 SINE MIR 91 192 -16 600 101 0 0 chrX 62716638 62716717 -99883213 - AluS SINE Alu -233 80 2 2307 201 22 149 chrX 62716719 62717034 -99882896 - L1 LINE L1 -2559 3587 3233 2298 78 0 31 chrX 62717034 62717355 -99882575 - AluY SINE Alu 0 311 1 2307 201 22 149 chrX 62717355 62717488 -99882442 - L1 LINE L1 -2913 3233 3085 2200 82 10 0 chrX 62717488 62717780 -99882150 - AluSp SINE Alu -18 295 1 2307 201 22 149 chrX 62717780 62717912 -99882018 - L1 LINE L1 -3061 3085 2938 658 143 0 0 chrX 62717912 62718010 -99881920 - FLAM_A SINE Alu -27 115 18 2307 201 22 149 chrX 62718010 62718284 -99881646 - L1 LINE L1 -3208 2938 2788 1977 118 10 3 chrX 62718284 62718573 -99881357 - AluSx SINE Alu -21 291 1 2307 201 22 149 chrX 62718573 62718709 -99881221 - L1 LINE L1 -3358 2788 2636 688 179 5 70 chrX 62718789 62718855 -99881075 - L1 LINE L1 -3526 2620 2551 1866 163 3 0 chrX 62718855 62719156 -99880774 + AluJo SINE Alu 1 302 -10 688 179 5 70 chrX 62719156 62719290 -99880640 - L1 LINE L1 -3595 2551 2433 186 318 23 45 chrX 62721633 62721721 -99878209 + L2 LINE L2 3004 3089 -183 218 304 65 54 chrX 62722250 62722342 -99877588 + MIR SINE MIR 36 128 -80 435 211 0 0 chrX 62722358 62722453 -99877477 + (TG)n Simple_repeat Simple_repeat 2 96 0 1053 150 0 0 chrX 62722454 62722634 -99877296 + (TA)n Simple_repeat Simple_repeat 1 180 0 742 110 0 0 chrX 62722657 62722757 -99877173 - AluJ/FLAM SINE Alu -212 100 1 235 213 27 13 chrX 62722772 62722847 -99877083 + CT-rich Low_complexity Low_complexity 1 76 0 1759 154 10 7 chrX 62722877 62723170 -99876760 - AluJb SINE Alu -18 294 1 629 163 0 0 chrX 62723172 62723264 -99876666 + MER68 LTR ERV1 467 558 -4 329 219 27 14 chrX 62723266 62723339 -99876591 + MIR SINE MIR 123 196 -66 5809 59 43 41 chrX 62723460 62724911 -99875019 + SVA Other Other 1 1123 -263 2089 128 0 0 chrX 62725205 62725501 -99874429 - AluSx SINE Alu -12 300 5 267 180 43 50 chrX 62725565 62725726 -99874204 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 * 398 180 52 17 chrX 62725606 62725778 -99874152 + (TA)n Simple_repeat Simple_repeat 1 178 0 1854 148 52 44 chrX 62725927 62726271 -99873659 - MER7A DNA MER2_type 0 346 2 280 239 33 11 chrX 62726415 62726507 -99873423 - L1MC4a LINE L1 -1902 5906 5813 596 256 98 18 chrX 62726516 62726760 -99873170 - L1MC4a LINE L1 -471 5699 5437 35812 45 3 2 chrX 62726761 62732913 -99867017 + L1PA4 LINE L1 1 6155 0 829 132 0 0 chrX 62733104 62733218 -99866712 + FRAM SINE Alu 33 146 -30 2283 100 0 0 chrX 62733327 62733617 -99866313 + AluSx SINE Alu 1 290 -22 587 280 111 55 chrX 62736242 62736639 -99863291 + MLT1J LTR MaLR 1 419 -92 411 73 0 0 chrX 62736684 62736739 -99863191 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 384 274 78 49 chrX 62736886 62737131 -99862799 + HAL1 LINE L1 13 264 -2243 4516 234 79 45 chrX 62737136 62737948 -99861982 + HAL1 LINE L1 463 1246 -1261 1834 135 11 11 chrX 62737948 62738230 -99861700 + AluJb SINE Alu 1 282 -30 209 83 28 0 chrX 62738236 62738272 -99861658 + (CAA)n Simple_repeat Simple_repeat 2 38 0 4516 234 79 45 chrX 62738272 62738819 -99861111 + HAL1 LINE L1 1250 1777 -730 2261 35 0 0 chrX 62738819 62739099 -99860831 - AluY SINE Alu 0 307 28 4516 234 79 45 chrX 62739099 62739478 -99860452 + HAL1 LINE L1 1777 2358 -149 2132 110 45 0 chrX 62739574 62739865 -99860065 - AluSx SINE Alu -8 304 1 1802 126 7 4 chrX 62739869 62740138 -99859792 - AluJb SINE Alu -19 293 24 716 221 61 17 chrX 62740591 62740772 -99859158 + MER5A DNA MER1_type 1 189 0 2276 105 0 10 chrX 62744100 62744413 -99855517 + AluSg SINE Alu 1 310 0 280 85 43 21 chrX 62744574 62744621 -99855309 - L1P5 LINE L1 -364 5792 5745 2360 138 37 0 chrX 62744650 62745005 -99854925 + L1PB4 LINE L1 5789 6156 0 968 170 42 61 chrX 62745468 62745619 -99854311 - AluJo SINE Alu -24 288 131 6439 97 36 39 chrX 62745619 62747809 -99852121 + SVA Other Other 3 1385 -1 968 170 42 61 chrX 62747809 62747860 -99852070 - AluJo SINE Alu -181 131 81 821 183 0 0 chrX 62747866 62747997 -99851933 - FLAM_C SINE Alu -2 131 1 2745 10 0 0 chrX 62748168 62748465 -99851465 - AluY SINE Alu -14 297 1 268 186 0 0 chrX 62750087 62750130 -99849800 - MER66A LTR ERV1 -146 332 290 2280 127 0 0 chrX 62750667 62750975 -99848955 - AluSx SINE Alu -2 310 3 370 250 12 12 chrX 62751046 62751130 -99848800 - MIR SINE MIR -170 92 9 270 56 37 19 chrX 62752806 62752860 -99847070 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 316 324 46 12 chrX 62755220 62755393 -99844537 + L3b LINE CR1 1147 1325 -258 1113 236 36 16 chrX 62755851 62756101 -99843829 - MIR SINE MIR 0 262 8 358 206 122 19 chrX 62756816 62756923 -99843007 + L1ME4a LINE L1 6003 6120 -1 3532 152 16 77 chrX 62756956 62757051 -99842879 + L1MC4a LINE L1 4966 5065 -1081 2485 76 0 0 chrX 62757051 62757355 -99842575 - AluY SINE Alu -7 304 1 3532 152 16 77 chrX 62757355 62757413 -99842517 + L1MC4a LINE L1 5065 5125 -1021 3074 178 59 5 chrX 62757413 62758020 -99841910 + L1MB8 LINE L1 5539 6178 0 3532 152 16 77 chrX 62758020 62758206 -99841724 + L1MC4a LINE L1 5125 5321 -825 4180 115 43 82 chrX 62758206 62758466 -99841464 + L1MB3 LINE L1 5459 5728 -455 2001 145 10 7 chrX 62758466 62758770 -99841160 - AluJo SINE Alu -7 305 1 4180 115 43 82 chrX 62758770 62758782 -99841148 + L1MB3 LINE L1 5728 5739 -444 1057 192 6 0 chrX 62758782 62758954 -99840976 - FAM SINE Alu -2 173 1 4180 115 43 82 chrX 62758954 62759427 -99840503 + L1MB3 LINE L1 5739 6176 -7 3532 152 16 77 chrX 62759427 62760298 -99839632 + L1MC4a LINE L1 5321 5398 -748 725 219 13 0 chrX 62760318 62760473 -99839457 - L1PB4 LINE L1 -106 6050 5894 725 149 0 0 chrX 62760480 62760594 -99839336 + L1PB4 LINE L1 6041 6154 -2 4740 123 28 20 chrX 62760600 62761283 -99838647 - L1MB2 LINE L1 -7 6164 5473 186 43 0 0 chrX 62761283 62761306 -99838624 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4740 123 28 20 chrX 62761306 62761369 -99838561 - L1MB2 LINE L1 -698 5473 5412 3313 166 144 87 chrX 62761369 62762278 -99837652 + L1MC4a LINE L1 6099 7059 -749 1914 130 65 0 chrX 62762809 62763102 -99836828 - AluSx SINE Alu 0 312 1 1875 281 211 18 chrX 62763333 62764390 -99835540 + L2 LINE L2 1483 2743 -571 1009 149 23 34 chrX 62764454 62764629 -99835301 + Tigger1 DNA MER2_type 1 173 -2245 * 1444 111 10 0 chrX 62764616 62764824 -99835106 + Tigger1 DNA MER2_type 2209 2418 0 273 314 0 29 chrX 62764825 62764927 -99835003 + L2 LINE L2 2850 2948 -324 * 1138 222 45 0 chrX 62764915 62765136 -99834794 - MIR SINE MIR -21 241 11 864 214 52 17 chrX 62765137 62765310 -99834620 + MER8 DNA MER2_type 1 179 -60 527 355 8 8 chrX 62765390 62765624 -99834306 + L2 LINE L2 2629 2862 -452 585 228 62 7 chrX 62767132 62767277 -99832653 - MIR SINE MIR -108 154 2 451 263 199 6 chrX 62767427 62767598 -99832332 + MIR SINE MIR 5 208 -54 1494 183 10 89 chrX 62767621 62768004 -99831926 + MLT1A1 LTR MaLR 1 353 -12 1217 204 4 31 chrX 62769730 62769955 -99829975 + MER20 DNA MER1_type 1 219 0 305 364 105 8 chrX 62770128 62770309 -99829621 + MIR SINE MIR 15 211 -51 1458 124 9 14 chrX 62770351 62770569 -99829361 + L1PB2 LINE L1 5935 6151 0 1894 171 7 0 chrX 62770581 62770879 -99829051 + AluJb SINE Alu 1 300 -12 1458 164 0 0 chrX 62771145 62771371 -99828559 + AluJb SINE Alu 69 294 -18 310 306 81 0 chrX 62771754 62771865 -99828065 - L2 LINE L2 -16 3256 3137 345 208 10 62 chrX 62771913 62772009 -99827921 + L1ME2 LINE L1 6047 6137 -27 1969 114 37 0 chrX 62772035 62772348 -99827582 + AluSx SINE Alu 1 323 0 206 303 56 22 chrX 62772632 62772721 -99827209 - L2 LINE L2 -226 3046 2955 * 643 317 146 53 chrX 62772715 62773548 -99826382 - L2 LINE L2 -14 3258 2504 2527 66 0 19 chrX 62773548 62773865 -99826065 + AluY SINE Alu 1 311 0 643 317 146 53 chrX 62773865 62774732 -99825198 - L2 LINE L2 -768 2504 1560 4339 92 21 13 chrX 62775183 62775804 -99824126 - L1MA4A LINE L1 -6 6297 5672 374 344 78 8 chrX 62776048 62776292 -99823638 - L2 LINE L2 -1217 2097 1837 543 194 0 19 chrX 62776389 62776497 -99823433 + L1ME3A LINE L1 6065 6170 0 636 288 23 40 chrX 62776596 62776872 -99823058 + L1ME3A LINE L1 4812 5091 -1055 187 43 0 0 chrX 62776872 62776895 -99823035 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 2153 85 0 4 chrX 62776895 62777176 -99822754 - AluSc SINE Alu -29 280 1 636 288 23 40 chrX 62777176 62777200 -99822730 + L1ME3A LINE L1 5089 5108 -1038 1713 267 106 3 chrX 62777253 62777923 -99822007 + L1ME3A LINE L1 5209 5950 -212 2266 122 0 0 chrX 62777981 62778293 -99821637 + AluSx SINE Alu 1 312 0 2045 141 7 0 chrX 62778315 62778614 -99821316 + AluJo SINE Alu 1 301 -11 406 284 54 44 chrX 62778634 62778838 -99821092 + L1ME3A LINE L1 5963 6168 -2 218 324 54 0 chrX 62778873 62778947 -99820983 - L2 LINE L2 -1524 1790 1713 1088 178 39 10 chrX 62778953 62779161 -99820769 + L1ME3A LINE L1 5663 5876 -294 630 176 176 25 chrX 62779164 62779323 -99820607 + MER53 DNA DNA 1 183 -6 735 240 64 12 chrX 62779323 62779550 -99820380 + L1ME3A LINE L1 5862 6125 -45 253 124 45 56 chrX 62779568 62779657 -99820273 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 366 248 132 0 chrX 62779817 62779938 -99819992 + L1ME2 LINE L1 5335 5471 -2337 315 267 33 0 chrX 62780978 62781098 -99818832 + L1ME3A LINE L1 5824 5947 -223 367 294 171 48 chrX 62781212 62781716 -99818214 + L2 LINE L2 1859 2424 -890 335 299 73 15 chrX 62782167 62782304 -99817626 - MIR SINE MIR -15 247 103 235 290 218 18 chrX 62782953 62783457 -99816473 + L1M4 LINE L1 2452 3056 -3090 1890 176 65 87 chrX 62783483 62783714 -99816216 + L1MC5 LINE L1 7299 7534 -427 2380 112 0 0 chrX 62783714 62784018 -99815912 + AluSx SINE Alu 1 304 -8 1890 176 65 87 chrX 62784018 62784183 -99815747 + L1MC5 LINE L1 7534 7701 -260 1657 155 54 24 chrX 62784183 62784480 -99815450 - AluJo SINE Alu -6 306 1 1890 176 65 87 chrX 62784480 62784714 -99815216 + L1MC5 LINE L1 7701 7916 -45 317 319 69 29 chrX 62784750 62785004 -99814926 + L1M4 LINE L1 3143 3410 -2736 1912 161 6 3 chrX 62785004 62785315 -99814615 - AluJo SINE Alu 0 312 1 317 319 69 29 chrX 62785315 62785336 -99814594 + L1M4 LINE L1 3410 3429 -2717 1841 183 47 6 chrX 62785450 62785810 -99814120 + L1ME2 LINE L1 5517 5891 -273 360 0 0 0 chrX 62785811 62785851 -99814079 + (CA)n Simple_repeat Simple_repeat 1 40 0 932 209 12 58 chrX 62785989 62786229 -99813701 + L1ME2 LINE L1 5913 6142 -22 1961 147 3 0 chrX 62786229 62786528 -99813402 - AluSx SINE Alu -12 300 1 932 209 12 58 chrX 62786528 62786546 -99813384 + L1ME2 LINE L1 6142 6159 -5 889 166 13 0 chrX 62786558 62786715 -99813215 + L1MA9 LINE L1 6153 6311 -1 395 226 84 11 chrX 62786813 62787003 -99812927 + L1MC4a LINE L1 5185 5388 -758 461 243 130 95 chrX 62787009 62787380 -99812550 + L1MC4a LINE L1 5461 5866 -255 2110 121 3 10 chrX 62787380 62787685 -99812245 + AluSx SINE Alu 1 303 -9 461 243 130 95 chrX 62787685 62787950 -99811980 + L1MC4a LINE L1 5866 6120 -1 1761 217 43 28 chrX 62788071 62788508 -99811422 + L1MB7 LINE L1 521 964 -5578 * 4553 155 76 65 chrX 62788505 62789167 -99810763 + L1MB7 LINE L1 4294 4947 -1735 1513 179 61 7 chrX 62789167 62789447 -99810483 + AluJb SINE Alu 3 297 -15 2232 115 6 13 chrX 62789449 62789761 -99810169 + AluSx SINE Alu 1 310 -2 4553 155 76 65 chrX 62789761 62791130 -99808800 + L1MB7 LINE L1 4947 6682 0 1600 112 142 26 chrX 62791129 62791328 -99808602 + L1MB7 LINE L1 5593 5840 -338 * 2209 103 6 29 chrX 62791328 62791640 -99808290 + AluSx SINE Alu 1 305 -7 1600 112 142 26 chrX 62791640 62791743 -99808187 + L1MB7 LINE L1 5840 5930 -248 5603 23 0 0 chrX 62791743 62792346 -99807584 + L1PA3 LINE L1 5548 6150 -5 1261 162 32 16 chrX 62792348 62792595 -99807335 + L1MB7 LINE L1 5925 6175 -9 1261 340 67 23 chrX 62792909 62793610 -99806320 + L3 LINE CR1 35 766 -811 188 33 0 33 chrX 62793627 62793657 -99806273 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 323 309 178 13 chrX 62794840 62794992 -99804938 + MIR3 SINE MIR 27 203 -5 23 68 0 0 chrX 62796467 62796511 -99803419 + AT_rich Low_complexity Low_complexity 1 44 0 1044 146 0 32 chrX 62796634 62796819 -99803111 + MER3 DNA MER1_type 31 209 0 471 182 105 28 chrX 62797188 62797331 -99802599 + L1ME4a LINE L1 5965 6118 -3 224 236 55 0 chrX 62797602 62797657 -99802273 + MIR SINE MIR 205 262 0 1692 156 18 18 chrX 62797757 62798040 -99801890 + AluJo SINE Alu 1 283 -29 434 184 31 31 chrX 62798408 62798506 -99801424 - AluSc SINE Alu -210 99 2 482 178 22 133 chrX 62798767 62798902 -99801028 + L2 LINE L2 3189 3308 -5 1992 153 3 0 chrX 62800111 62800412 -99799518 + AluJb SINE Alu 1 302 -10 22 0 0 0 chrX 62800511 62800533 -99799397 + AT_rich Low_complexity Low_complexity 1 22 0 2375 84 0 0 chrX 62800564 62800860 -99799070 - AluY SINE Alu -15 296 1 21 0 0 0 chrX 62800901 62800922 -99799008 + AT_rich Low_complexity Low_complexity 1 21 0 2023 122 7 0 chrX 62801022 62801310 -99798620 + AluSx SINE Alu 1 290 -22 1648 140 43 14 chrX 62801426 62801705 -99798225 - AluJb SINE Alu -24 288 2 7145 139 65 6 chrX 62801837 62802998 -99796932 + Tigger3b DNA MER2_type 1 1230 -1 285 246 107 33 chrX 62803727 62803849 -99796081 + L3 LINE CR1 1130 1260 -317 2316 222 66 4 chrX 62803856 62804414 -99795516 + L1MC4 LINE L1 7309 7901 -141 692 256 107 62 chrX 62804536 62804844 -99795086 + L3 LINE CR1 1254 1575 -2 202 337 12 12 chrX 62805050 62805136 -99794794 + L2 LINE L2 2998 3083 -189 26 0 0 0 chrX 62805240 62805266 -99794664 + AT_rich Low_complexity Low_complexity 1 26 0 199 252 61 104 chrX 62805270 62805385 -99794545 + L2 LINE L2 3121 3230 -42 352 250 54 22 chrX 62805565 62805657 -99794273 + L2 LINE L2 3202 3296 -17 2448 65 3 0 chrX 62807498 62807790 -99792140 + AluSp SINE Alu 7 299 -14 813 165 0 0 chrX 62808864 62809003 -99790927 + FLAM_A SINE Alu 1 139 0 1938 133 7 3 chrX 62810469 62810762 -99789168 + AluSx SINE Alu 1 294 -18 274 298 105 18 chrX 62810806 62810920 -99789010 - MER5A DNA MER1_type -7 182 59 206 370 9 9 chrX 62815058 62815166 -99784764 + GA-rich Low_complexity Low_complexity 3 110 0 498 377 60 36 chrX 62816578 62816994 -99782936 + L2 LINE L2 2827 3252 -20 361 333 32 0 chrX 62817026 62817149 -99782781 + MIR3 SINE MIR 81 207 -1 418 299 6 61 chrX 62817368 62817558 -99782372 + MIR SINE MIR 6 184 -67 1963 168 18 12 chrX 62819258 62819597 -99780333 + MER58B DNA MER1_type 1 341 0 2459 69 0 25 chrX 62820519 62820836 -99779094 + AluY SINE Alu 1 309 -2 1462 259 68 72 chrX 62820853 62821568 -99778362 + L1ME3A LINE L1 5119 5835 -335 1443 173 39 106 chrX 62821568 62821956 -99777974 + MLT1A1 LTR MaLR 3 364 -1 1462 259 68 72 chrX 62821956 62821995 -99777935 + L1ME3A LINE L1 5835 5873 -297 2226 113 3 0 chrX 62821995 62822296 -99777634 + AluSx SINE Alu 1 302 -10 1462 259 68 72 chrX 62822296 62822376 -99777554 + L1ME3A LINE L1 5873 5948 -222 209 163 0 61 chrX 62822471 62822520 -99777410 + GA-rich Low_complexity Low_complexity 1 46 0 218 313 15 0 chrX 62822697 62822764 -99777166 + MIR3 SINE MIR 91 158 -50 * 373 253 278 6 chrX 62822751 62822913 -99777017 - MIR SINE MIR -38 224 19 2415 88 0 0 chrX 62822974 62823281 -99776649 + AluSx SINE Alu 1 307 -5 195 42 0 0 chrX 62823319 62823343 -99776587 + (ATG)n Simple_repeat Simple_repeat 2 25 0 566 269 28 26 chrX 62823711 62823938 -99775992 + L1ME LINE L1 5464 5688 -433 304 307 3 38 chrX 62824252 62824404 -99775526 + GA-rich Low_complexity Low_complexity 1 146 0 535 68 0 0 chrX 62824866 62824939 -99774991 - L1MD2 LINE L1 -1 6358 6286 330 300 40 60 chrX 62825767 62825917 -99774013 + Charlie8 DNA MER1_type 1 147 -2270 21 36 0 0 chrX 62826046 62826074 -99773856 + AT_rich Low_complexity Low_complexity 1 28 0 250 220 0 0 chrX 62826172 62826222 -99773708 + Charlie8 DNA MER1_type 144 193 -2224 297 109 0 0 chrX 62827585 62827631 -99772299 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 753 189 25 40 chrX 62829939 62829985 -99769945 - L1ME3 LINE L1 -29 6133 6088 2398 152 30 69 chrX 62829985 62830510 -99769420 + MLT1D LTR MaLR 1 505 0 753 189 25 40 chrX 62830510 62830638 -99769292 - L1ME3 LINE L1 -74 6088 5965 309 250 25 12 chrX 62830863 62830943 -99768987 + MLT1L LTR MaLR 1 81 -534 1216 265 89 24 chrX 62830974 62831400 -99768530 + MLT1L LTR MaLR 149 602 -13 496 288 120 5 chrX 62831862 62832053 -99767877 - MIR SINE MIR -39 223 11 365 180 18 18 chrX 62832061 62832172 -99767758 + CT-rich Low_complexity Low_complexity 4 114 0 237 180 20 0 chrX 62832532 62832582 -99767348 - L2 LINE L2 0 3313 3263 296 80 60 0 chrX 62833014 62833064 -99766866 + GA-rich Low_complexity Low_complexity 1 53 0 594 263 64 6 chrX 62833600 62833771 -99766159 - MIR SINE MIR -50 212 32 1821 197 124 12 chrX 62834363 62834881 -99765049 + L2 LINE L2 2289 2864 -450 803 226 0 0 chrX 62834933 62835079 -99764851 - FRAM SINE Alu -31 145 1 497 251 76 24 chrX 62835123 62835334 -99764596 + L2 LINE L2 3079 3300 -13 1511 156 34 0 chrX 62835356 62835594 -99764336 - AluJb SINE Alu -27 285 40 679 253 94 53 chrX 62835650 62835895 -99764035 + MIR SINE MIR 8 262 0 383 205 0 0 chrX 62836127 62836205 -99763725 + MIR3 SINE MIR 108 185 -23 2351 104 7 3 chrX 62840251 62840559 -99759371 - AluSx SINE Alu -3 309 1 483 292 131 19 chrX 62840563 62841024 -99758906 - L1ME3 LINE L1 -248 5873 5351 531 191 75 34 chrX 62841362 62841531 -99758399 - MIR3 SINE MIR -27 181 7 213 382 70 23 chrX 62841553 62842292 -99757638 + L2 LINE L2 2258 3052 -220 330 292 0 44 chrX 62842477 62842657 -99757273 + MIR SINE MIR 20 188 -62 523 293 32 13 chrX 62843124 62843281 -99756649 + MIR SINE MIR 43 202 -60 701 91 0 0 chrX 62843365 62843453 -99756477 - 5S rRNA rRNA -32 89 2 2426 99 0 0 chrX 62844332 62844635 -99755295 + AluSx SINE Alu 1 303 -9 513 238 18 24 chrX 62844948 62845112 -99754818 + MER103 DNA DNA 3 165 -1 383 264 88 115 chrX 62845448 62845970 -99753960 - MLT1J LTR MaLR -3 508 1 244 152 22 0 chrX 62846378 62846424 -99753506 + L2 LINE L2 3262 3308 -5 21 0 0 0 chrX 62846668 62846689 -99753241 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 62846791 62846812 -99753118 + AT_rich Low_complexity Low_complexity 1 21 0 2236 87 42 0 chrX 62846815 62847104 -99752826 + AluSc SINE Alu 1 301 -8 3500 153 89 15 chrX 62847280 62847302 -99752628 + L1MC3 LINE L1 7054 7073 -712 2329 97 0 3 chrX 62847302 62847602 -99752328 - AluSx SINE Alu -8 304 6 3500 153 89 15 chrX 62847602 62848252 -99751678 + L1MC3 LINE L1 7073 7776 -9 2080 114 14 3 chrX 62848295 62848585 -99751345 + AluSx SINE Alu 1 293 -19 1779 200 43 46 chrX 62848620 62849129 -99750801 + L1ME LINE L1 5194 5708 -456 1852 172 13 0 chrX 62849129 62849431 -99750499 - AluJo SINE Alu -4 308 3 4862 107 10 4 chrX 62849569 62850264 -99749666 - L1PA15 LINE L1 -1 6164 5466 24 53 0 0 chrX 62850371 62850409 -99749521 + AT_rich Low_complexity Low_complexity 1 38 0 1776 147 62 0 chrX 62850684 62850956 -99748974 - AluJo SINE Alu -23 289 1 1584 192 0 103 chrX 62851016 62851433 -99748497 + MLT1A2 LTR MaLR 1 374 0 2919 159 59 23 chrX 62851651 62852149 -99747781 - L1MD3 LINE L1 0 7995 7473 5528 63 10 24 chrX 62852149 62852320 -99747610 - LTR8 LTR ERV1 0 691 519 2409 95 0 0 chrX 62852320 62852625 -99747305 - AluSg SINE Alu -5 305 1 5528 63 10 24 chrX 62852625 62853154 -99746776 - LTR8 LTR ERV1 -172 519 1 2919 159 59 23 chrX 62853154 62853216 -99746714 - L1MD3 LINE L1 -522 7473 7415 315 65 22 0 chrX 62853216 62853262 -99746668 - MADE1 DNA Mariner 0 80 34 424 202 50 40 chrX 62853266 62853365 -99746565 - MLT1F1 LTR MaLR -433 134 35 1496 171 10 30 chrX 62853365 62853663 -99746267 - L1MD3 LINE L1 -879 7116 6825 317 324 48 38 chrX 62853664 62853957 -99745973 - L1 LINE L1 -3174 2972 2677 1834 114 0 0 chrX 62854156 62854393 -99745537 - AluSx SINE Alu -71 241 5 23 0 0 0 chrX 62855049 62855072 -99744858 + AT_rich Low_complexity Low_complexity 1 23 0 1977 122 50 0 chrX 62855072 62855350 -99744580 - AluSx SINE Alu -19 293 2 1990 130 58 20 chrX 62855597 62855943 -99743987 + L1MB7 LINE L1 5666 6024 -160 225 235 174 10 chrX 62857298 62857396 -99742534 - MIR SINE MIR -74 134 21 674 294 45 8 chrX 62857570 62857815 -99742115 - MIR SINE MIR -7 255 2 562 242 91 68 chrX 62858586 62858636 -99741294 - MIR SINE MIR -3 259 212 2359 110 0 0 chrX 62858636 62858946 -99740984 - AluSx SINE Alu -2 310 1 562 242 91 68 chrX 62858946 62859147 -99740783 - MIR SINE MIR -50 212 2 209 303 165 18 chrX 62860008 62860117 -99739813 + L2 LINE L2 3139 3263 -9 701 275 123 3 chrX 62862267 62862642 -99737288 - L1MC5 LINE L1 -31 7930 7511 357 306 31 41 chrX 62862668 62862864 -99737066 - L1ME3A LINE L1 -15 6155 5962 2138 144 3 0 chrX 62862981 62863287 -99736643 - AluJb SINE Alu -5 307 1 1432 194 9 13 chrX 62863293 62863608 -99736322 - L1MD3 LINE L1 -11 7984 7671 262 231 14 0 chrX 62863630 62863704 -99736226 - L1MD3 LINE L1 -287 7708 7542 * 626 235 56 38 chrX 62863700 62863913 -99736017 - L1MC5 LINE L1 -463 7498 7282 527 237 35 47 chrX 62865223 62865392 -99734538 - L1ME4a LINE L1 0 6121 5955 639 243 63 54 chrX 62865414 62865653 -99734277 + MIR SINE MIR 17 257 -5 599 214 137 1 chrX 62865654 62865829 -99734101 - L1ME4a LINE L1 -177 5944 5748 2372 98 0 3 chrX 62866005 62866311 -99733619 - AluSx SINE Alu -7 305 1 1777 209 76 3 chrX 62866459 62866827 -99733103 + MSTD LTR MaLR 2 396 0 399 152 0 0 chrX 62867379 62867458 -99732472 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 378 0 0 0 chrX 62868179 62868221 -99731709 + (TG)n Simple_repeat Simple_repeat 2 43 0 2405 84 3 3 chrX 62868659 62868958 -99730972 + AluSq SINE Alu 1 299 -14 241 240 107 13 chrX 62869292 62869367 -99730563 - MER102a DNA MER1_type 0 330 249 328 221 84 38 chrX 62869440 62869571 -99730359 - L1MC4 LINE L1 -4 8038 7902 351 0 0 0 chrX 62869883 62869922 -99730008 + (CA)n Simple_repeat Simple_repeat 2 40 0 1515 277 72 14 chrX 62869922 62870552 -99729378 - L1ME3 LINE L1 -259 5903 5240 640 255 24 54 chrX 62870580 62870809 -99729121 + MIR SINE MIR 9 228 -34 1514 122 48 0 chrX 62870834 62871064 -99728866 - L1PA13 LINE L1 -11 6152 5912 247 277 0 12 chrX 62871247 62871330 -99728600 - HAL1 LINE L1 -105 2402 2321 400 171 12 0 chrX 62871330 62871412 -99728518 + L2 LINE L2 3227 3309 -4 227 274 51 71 chrX 62871417 62871448 -99728482 - L1ME3 LINE L1 -924 5222 5192 1823 177 0 0 chrX 62871448 62871757 -99728173 - AluSx SINE Alu 0 309 1 227 274 51 71 chrX 62871757 62871921 -99728009 - L1ME3 LINE L1 -954 5192 5030 1129 233 250 10 chrX 62872231 62872371 -99727559 - L2 LINE L2 0 3313 3208 207 0 0 0 chrX 62872371 62872394 -99727536 + (TATAA)n Simple_repeat Simple_repeat 5 27 0 1129 233 250 10 chrX 62872394 62872676 -99727254 - L2 LINE L2 -105 3208 2791 382 245 55 61 chrX 62873017 62873180 -99726750 - MLT1J LTR MaLR -2 509 348 582 244 54 12 chrX 62873211 62873379 -99726551 + L2 LINE L2 2575 2749 -565 598 191 61 8 chrX 62873379 62873510 -99726420 + L1MC4a LINE L1 5820 5957 -1851 198 132 79 0 chrX 62873513 62873589 -99726341 + (TA)n Simple_repeat Simple_repeat 1 82 0 225 265 23 76 chrX 62873592 62873724 -99726206 + L1MC4a LINE L1 5950 6074 -1734 374 252 22 15 chrX 62873734 62873869 -99726061 + L1MC4 LINE L1 7114 7249 -793 890 234 155 49 chrX 62874016 62874179 -99725751 + L1MC5 LINE L1 7304 7448 -513 1900 151 0 41 chrX 62874179 62874496 -99725434 + 7SLRNA srpRNA srpRNA 2 305 -15 890 234 155 49 chrX 62874496 62874887 -99725043 + L1MC5 LINE L1 7448 7917 -44 1246 276 106 18 chrX 62874897 62875395 -99724535 + L2 LINE L2 2737 3275 -38 2429 91 10 0 chrX 62875410 62875717 -99724213 - AluSg SINE Alu 0 310 1 254 208 0 0 chrX 62875756 62875804 -99724126 + L2 LINE L2 3257 3304 -9 261 0 0 0 chrX 62876933 62876962 -99722968 + (TG)n Simple_repeat Simple_repeat 2 30 0 347 286 85 16 chrX 62877008 62877197 -99722733 - L1M4 LINE L1 -1488 4658 4457 318 329 67 7 chrX 62877210 62877359 -99722571 - L1M4 LINE L1 -1784 4362 4205 266 177 0 32 chrX 62877705 62877767 -99722163 + L1MB7 LINE L1 6091 6150 -34 2814 96 5 26 chrX 62877772 62878059 -99721871 - THE1C LTR MaLR -2 373 93 2117 116 0 0 chrX 62878059 62878378 -99721552 + AluSx SINE Alu 1 319 0 2814 96 5 26 chrX 62878378 62878466 -99721464 - THE1C LTR MaLR -282 93 5 8190 115 35 13 chrX 62878468 62878548 -99721382 - THE1C-int LTR MaLR 0 1580 1503 2183 119 3 0 chrX 62878548 62878842 -99721088 - AluSx SINE Alu -17 295 1 8190 115 35 13 chrX 62878842 62879960 -99719970 - THE1C-int LTR MaLR -77 1503 356 * 44992 38 3 0 chrX 62879956 62886093 -99713837 + L1PA4 LINE L1 3 6155 0 2490 68 5 128 chrX 62886098 62886526 -99713404 - THE1C-int LTR MaLR -1205 375 1 2810 90 33 6 chrX 62886526 62886891 -99713039 - THE1C LTR MaLR 0 375 1 195 42 0 0 chrX 62886917 62886941 -99712989 + (A)n Simple_repeat Simple_repeat 1 24 0 2526 202 102 15 chrX 62887719 62888133 -99711797 + L1MD2 LINE L1 5695 6180 -179 186 103 0 0 chrX 62888133 62888162 -99711768 + (CA)n Simple_repeat Simple_repeat 2 30 0 2526 202 102 15 chrX 62888162 62888356 -99711574 + L1MD2 LINE L1 6180 6356 -3 4514 155 54 36 chrX 62888442 62889233 -99710697 - L1MB7 LINE L1 -16 6168 5344 1985 140 3 10 chrX 62889233 62889533 -99710397 - AluJo SINE Alu -14 298 1 4514 155 54 36 chrX 62889533 62890093 -99709837 - L1MB7 LINE L1 -840 5344 4796 340 315 81 22 chrX 62890255 62890481 -99709449 + MIR SINE MIR 14 246 -16 509 353 72 54 chrX 62892542 62892984 -99706946 + L2 LINE L2 2809 3258 -14 228 292 56 22 chrX 62892978 62893067 -99706863 + L2 LINE L2 2955 3046 -226 * 1639 245 77 21 chrX 62893138 62893872 -99706058 - L2 LINE L2 -1 3312 2531 455 314 107 21 chrX 62893874 62894014 -99705916 + L2 LINE L2 3119 3270 -2 209 222 28 0 chrX 62896989 62897061 -99702869 + C-rich Low_complexity Low_complexity 4 77 0 2722 242 49 21 chrX 62897426 62898805 -99701125 + L1M3a LINE L1 313 1726 -4309 825 141 47 0 chrX 62898806 62898934 -99700996 + AluJo SINE Alu 1 134 -178 189 254 0 63 chrX 62899138 62899201 -99700729 + L2 LINE L2 3255 3313 0 1939 139 0 14 chrX 62899267 62899554 -99700376 - AluJb SINE Alu -27 285 3 320 253 0 13 chrX 62900448 62900523 -99699407 - L2 LINE L2 -9 3263 3190 192 97 0 0 chrX 62901240 62901271 -99698659 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 805 158 0 0 chrX 62901271 62901391 -99698539 - FLAM_C SINE Alu -23 120 1 648 256 0 8 chrX 62901409 62901542 -99698388 + L2 LINE L2 3122 3253 -19 1434 133 0 0 chrX 62901561 62901779 -99698151 + AluSg/x SINE Alu 94 311 -1 907 221 113 0 chrX 62901920 62902124 -99697806 - MIR SINE MIR -33 229 3 318 262 12 0 chrX 62902140 62902224 -99697706 - MIR SINE MIR -81 127 43 2323 93 0 29 chrX 62903086 62903398 -99696532 + AluSx SINE Alu 1 303 -9 370 123 0 0 chrX 62903679 62903736 -99696194 - AluSp/q SINE Alu -3 300 244 2010 168 29 31 chrX 62903912 62904329 -99695601 + Charlie4a DNA MER1_type 1 416 -92 1812 99 16 0 chrX 62904527 62904769 -99695161 + AluY SINE Alu 35 280 -31 207 0 0 0 chrX 62904773 62904796 -99695134 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 839 182 0 0 chrX 62904827 62904959 -99694971 + FLAM_C SINE Alu 1 132 -1 335 244 77 0 chrX 62905635 62905713 -99694217 + L2 LINE L2 3229 3312 -1 213 121 0 0 chrX 62906329 62906362 -99693568 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1537 200 17 21 chrX 62906362 62906787 -99693143 - L1ME LINE L1 -707 5459 5040 1835 159 0 28 chrX 62906815 62907136 -99692794 - AluJb SINE Alu 0 312 1 274 213 0 13 chrX 62907136 62907211 -99692719 - L1ME LINE L1 -1089 5057 4984 3325 165 55 28 chrX 62907211 62907601 -99692329 - L1MA9 LINE L1 0 6312 5934 682 235 0 0 chrX 62907601 62907720 -99692210 - FLAM_A SINE Alu -14 119 1 3325 165 55 28 chrX 62907720 62907844 -99692086 - L1MA9 LINE L1 -378 5934 5815 261 0 0 0 chrX 62907844 62907873 -99692057 + (TG)n Simple_repeat Simple_repeat 1 29 0 3325 165 55 28 chrX 62907873 62907995 -99691935 - L1MA9 LINE L1 -497 5815 5658 10458 160 12 7 chrX 62908001 62910011 -99689919 - L1MA9 LINE L1 -722 5590 3568 1336 119 43 51 chrX 62910011 62910246 -99689684 - AluSg/x SINE Alu -11 301 69 1572 169 19 3 chrX 62910252 62910571 -99689359 - L1MA9 LINE L1 -2609 3537 3214 679 281 0 0 chrX 62910554 62910764 -99689166 - L1M4 LINE L1 -3024 4541 4332 * 798 267 0 4 chrX 62910853 62911078 -99688852 - L1M4 LINE L1 -4430 3135 2912 279 288 27 54 chrX 62911520 62911631 -99688299 + MIR SINE MIR 27 134 -74 324 155 0 36 chrX 62911674 62911758 -99688172 + CT-rich Low_complexity Low_complexity 2 82 0 203 342 13 0 chrX 62911845 62911924 -99688006 + GA-rich Low_complexity Low_complexity 5 84 0 2406 77 0 19 chrX 62912179 62912359 -99687571 - AluSx SINE Alu 0 312 139 2503 48 0 10 chrX 62912359 62912668 -99687262 - AluY SINE Alu -5 306 1 2406 77 0 19 chrX 62912668 62912797 -99687133 - AluSx SINE Alu -173 139 9 1674 194 0 29 chrX 62913461 62913770 -99686160 + AluJo SINE Alu 1 300 -12 224 246 0 134 chrX 62913788 62913922 -99686008 + MIR SINE MIR 61 176 -86 2082 136 0 22 chrX 62914161 62914478 -99685452 - AluJo SINE Alu -2 310 1 273 322 182 44 chrX 62914627 62915042 -99684888 + L2 LINE L2 2579 3045 -227 245 267 0 17 chrX 62915081 62915141 -99684789 + MIR SINE MIR 183 241 -21 463 256 38 31 chrX 62915161 62915321 -99684609 + MIR SINE MIR 90 250 -12 237 98 0 0 chrX 62915562 62915603 -99684327 + (T)n Simple_repeat Simple_repeat 1 41 0 185 278 10 93 chrX 62915883 62915980 -99683950 - L2 LINE L2 -4 3268 3180 306 356 23 14 chrX 62916045 62916264 -99683666 - L2 LINE L2 -179 3093 2873 660 210 12 25 chrX 62916268 62916430 -99683500 + MER113 DNA MER1_type? 5 164 -357 410 347 68 34 chrX 62916545 62916871 -99683059 - L2 LINE L2 -434 2880 2544 324 0 0 0 chrX 62916882 62916918 -99683012 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 358 347 106 9 chrX 62916961 62917215 -99682715 - L2 LINE L2 -283 3030 2748 484 286 43 16 chrX 62917406 62917565 -99682365 - L2 LINE L2 -665 2649 2486 707 268 100 13 chrX 62917565 62917804 -99682126 + MIR SINE MIR 1 260 -2 673 259 12 0 chrX 62917953 62918119 -99681811 + L1M4 LINE L1 2380 2547 -3599 * 4016 204 55 40 chrX 62918117 62919306 -99680624 + L1M4 LINE L1 3404 4610 -1536 520 268 43 61 chrX 62919311 62919591 -99680339 + L1MC4 LINE L1 7738 8012 -30 1443 230 27 5 chrX 62919628 62919998 -99679932 + L1M4 LINE L1 4616 4993 -1153 847 209 35 6 chrX 62920001 62920173 -99679757 + L1M3a LINE L1 5 181 -5774 10496 160 63 84 chrX 63120218 63120312 -99479618 - L1ME3A LINE L1 -276 5894 5800 207 0 0 0 chrX 63120312 63120335 -99479595 + (TG)n Simple_repeat Simple_repeat 1 23 0 10496 160 63 84 chrX 63120335 63122473 -99477457 - L1ME3A LINE L1 -370 5800 3440 1346 115 43 51 chrX 63122473 63122708 -99477222 - AluSg/x SINE Alu -11 301 69 10496 160 63 84 chrX 63122708 63123224 -99476706 - L1ME3A LINE L1 -2730 3440 2915 3099 235 35 29 chrX 63123374 63123531 -99476399 - L1M2 LINE L1 -4163 1872 1717 1624 181 13 30 chrX 63123531 63123835 -99476095 - AluJo SINE Alu -13 299 1 3099 235 35 29 chrX 63123835 63125006 -99474924 - L1M2 LINE L1 -4318 1717 547 1093 239 53 4 chrX 63125173 63125420 -99474510 - L1M2 LINE L1 -5692 263 5 1423 227 27 5 chrX 63125423 63125793 -99474137 - L1M4 LINE L1 -1153 4993 4616 489 268 43 61 chrX 63125830 63126110 -99473820 - L1MC4 LINE L1 -30 8012 7738 3950 203 55 40 chrX 63126115 63127305 -99472625 - L1M4 LINE L1 -1536 4610 3404 663 259 12 0 chrX 63127303 63127469 -99472461 - L1M4 LINE L1 -3599 2547 2380 * 624 289 92 4 chrX 63127618 63127857 -99472073 - MIR SINE MIR -2 260 1 431 286 43 16 chrX 63127857 63128016 -99471914 + L2 LINE L2 2486 2649 -665 305 339 93 11 chrX 63128277 63128460 -99471470 + L2 LINE L2 2833 3030 -283 324 0 0 0 chrX 63128503 63128539 -99471391 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 280 353 68 34 chrX 63128550 63128876 -99471054 + L2 LINE L2 2544 2880 -434 652 210 12 25 chrX 63128991 63129153 -99470777 - MER113 DNA MER1_type? -357 164 5 241 370 23 14 chrX 63129157 63129376 -99470554 + L2 LINE L2 2873 3093 -179 237 98 0 0 chrX 63129818 63129859 -99470071 + (A)n Simple_repeat Simple_repeat 1 41 0 413 265 40 20 chrX 63130100 63130251 -99469679 - MIR SINE MIR -12 250 97 229 267 0 17 chrX 63130280 63130340 -99469590 - MIR SINE MIR -21 241 183 213 329 90 48 chrX 63130379 63130794 -99469136 - L2 LINE L2 -227 3045 2579 2096 136 0 22 chrX 63130943 63131260 -99468670 + AluJo SINE Alu 1 310 -2 214 200 0 0 chrX 63131593 63131633 -99468297 - MIR SINE MIR -162 100 61 1659 197 0 29 chrX 63131651 63131960 -99467970 - AluJo SINE Alu -12 300 1 2472 72 0 16 chrX 63132624 63132753 -99467177 + AluSx SINE Alu 9 139 -173 2534 48 0 10 chrX 63132753 63133062 -99466868 + AluY SINE Alu 1 306 -5 2472 72 0 16 chrX 63133062 63133239 -99466691 + AluSx SINE Alu 139 310 -2 203 342 13 0 chrX 63133478 63133557 -99466373 + CT-rich Low_complexity Low_complexity 5 84 0 324 155 0 36 chrX 63133644 63133728 -99466202 + GA-rich Low_complexity Low_complexity 2 82 0 243 288 27 54 chrX 63133771 63133882 -99466048 - MIR SINE MIR -74 134 27 4837 133 24 19 chrX 63134354 63135181 -99464749 + L1MB3 LINE L1 5353 6183 0 2480 84 0 6 chrX 63135229 63135540 -99464390 - AluSc SINE Alu 0 309 1 2255 104 0 13 chrX 63135984 63136293 -99463637 + AluSq SINE Alu 1 305 -8 2485 161 27 27 chrX 63136700 63137185 -99462745 - Charlie4a DNA MER1_type -23 485 1 370 123 0 0 chrX 63137361 63137418 -99462512 + AluSp/q SINE Alu 244 300 -3 2341 93 0 29 chrX 63137699 63138011 -99461919 - AluSx SINE Alu -9 303 1 291 262 12 0 chrX 63138873 63138957 -99460973 + MIR SINE MIR 43 127 -81 837 221 113 0 chrX 63138973 63139177 -99460753 + MIR SINE MIR 3 229 -33 1443 133 0 0 chrX 63139318 63139536 -99460394 - AluSg/x SINE Alu -1 311 94 599 256 0 8 chrX 63139555 63139688 -99460242 - L2 LINE L2 -19 3253 3122 816 158 0 0 chrX 63139706 63139826 -99460104 + FLAM_C SINE Alu 1 120 -23 192 97 0 0 chrX 63139826 63139857 -99460073 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 296 253 0 13 chrX 63140574 63140649 -99459281 + L2 LINE L2 3190 3263 -9 233 318 99 26 chrX 63140979 63141130 -99458800 - L2 LINE L2 -81 3191 3030 1955 139 0 14 chrX 63141543 63141830 -99458100 + AluJb SINE Alu 3 285 -27 339 186 14 14 chrX 63142081 63142151 -99457779 + MIR SINE MIR 72 141 -67 580 191 18 0 chrX 63142710 63142820 -99457110 + MER81 DNA DNA 3 114 0 196 286 254 33 chrX 63143043 63143256 -99456674 + L2 LINE L2 2827 3086 -186 950 159 24 77 chrX 63144562 63144769 -99455161 + AluJo SINE Alu 87 282 -30 539 198 0 0 chrX 63144812 63144913 -99455017 + FRAM SINE Alu 74 174 -2 495 268 137 0 chrX 63145198 63145388 -99454542 + MIR SINE MIR 47 262 0 1680 107 5 0 chrX 63145731 63145947 -99453983 + AluJb SINE Alu 1 217 -95 254 53 0 123 chrX 63145948 63146005 -99453925 + FLAM SINE Alu 84 133 0 183 261 15 15 chrX 63146080 63146145 -99453785 - MIR SINE MIR -42 220 156 227 88 0 0 chrX 63146182 63146216 -99453714 - MIR SINE MIR -133 75 42 186 255 39 0 chrX 63147302 63147353 -99452577 + L2 LINE L2 3198 3250 -22 2374 73 105 11 chrX 63147576 63147958 -99451972 - L1MA2 LINE L1 0 6304 5887 2220 101 27 0 chrX 63148770 63149068 -99450862 + AluSg SINE Alu 1 306 -4 1631 128 121 8 chrX 63150786 63151043 -99448887 - AluJo SINE Alu -21 291 6 1085 158 35 55 chrX 63151342 63151596 -99448334 - L1MB8 LINE L1 -64 6114 5866 2250 104 7 0 chrX 63151600 63151899 -99448031 - AluSx SINE Alu -11 301 1 1775 200 81 41 chrX 63151938 63152497 -99447433 - L1MC5 LINE L1 -435 7526 6946 893 136 0 0 chrX 63152497 63152622 -99447308 + AluJo SINE Alu 1 125 -187 468 200 0 0 chrX 63152677 63152757 -99447173 + AluJo SINE Alu 130 209 -103 31 0 0 0 chrX 63152785 63152816 -99447114 + AT_rich Low_complexity Low_complexity 1 31 0 2207 103 0 10 chrX 63152874 63153164 -99446766 - AluSx SINE Alu -25 287 1 2383 166 112 2 chrX 63153191 63153708 -99446222 - L1MC3 LINE L1 -7 7778 7205 299 268 10 10 chrX 63153716 63153813 -99446117 - MLT1F1 LTR MaLR -436 131 35 1003 209 72 4 chrX 63153813 63154062 -99445868 - L1MC3 LINE L1 -688 7097 6832 1458 159 176 3 chrX 63154072 63154361 -99445569 + MER47A DNA MER2_type 28 366 0 1015 127 7 0 chrX 63154361 63154503 -99445427 - L1MC3 LINE L1 -952 6833 6691 832 224 72 53 chrX 63154714 63155004 -99444926 - L1MC5 LINE L1 -1049 6946 6626 770 278 53 50 chrX 63155391 63155790 -99444140 - HAL1b LINE L1 -690 658 259 2082 256 96 19 chrX 63155901 63156628 -99443302 + L1M2a LINE L1 867 1649 -5519 395 117 63 90 chrX 63157110 63157172 -99442758 - L1MB7 LINE L1 -12 6172 6113 2107 75 38 41 chrX 63157172 63157465 -99442465 - AluSg SINE Alu -6 304 13 395 117 63 90 chrX 63157465 63157513 -99442417 - L1MB7 LINE L1 -71 6113 6065 2000 227 56 33 chrX 63158107 63158683 -99441247 - L1ME3A LINE L1 0 6170 5582 559 255 23 46 chrX 63158714 63158930 -99441000 - L1ME3A LINE L1 -3016 3130 2920 297 109 0 0 chrX 63160448 63160494 -99439436 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 753 189 25 40 chrX 63162802 63162848 -99437082 - L1ME3 LINE L1 -29 6133 6088 2398 152 30 69 chrX 63162848 63163373 -99436557 + MLT1D LTR MaLR 1 505 0 753 189 25 40 chrX 63163373 63163501 -99436429 - L1ME3 LINE L1 -74 6088 5965 309 250 25 12 chrX 63163726 63163806 -99436124 + MLT1L LTR MaLR 1 81 -534 1216 265 89 24 chrX 63163837 63164263 -99435667 + MLT1L LTR MaLR 149 602 -13 496 288 120 5 chrX 63164725 63164916 -99435014 - MIR SINE MIR -39 223 11 365 180 18 18 chrX 63164924 63165035 -99434895 + CT-rich Low_complexity Low_complexity 4 114 0 237 180 20 0 chrX 63165395 63165445 -99434485 - L2 LINE L2 0 3313 3263 296 80 60 0 chrX 63165877 63165927 -99434003 + GA-rich Low_complexity Low_complexity 1 53 0 594 263 64 6 chrX 63166463 63166634 -99433296 - MIR SINE MIR -50 212 32 1821 197 124 12 chrX 63167226 63167744 -99432186 + L2 LINE L2 2289 2864 -450 803 226 0 0 chrX 63167796 63167942 -99431988 - FRAM SINE Alu -31 145 1 497 251 76 24 chrX 63167986 63168197 -99431733 + L2 LINE L2 3079 3300 -13 1511 156 34 0 chrX 63168219 63168457 -99431473 - AluJb SINE Alu -27 285 40 679 253 94 53 chrX 63168513 63168758 -99431172 + MIR SINE MIR 8 262 0 383 205 0 0 chrX 63168990 63169068 -99430862 + MIR3 SINE MIR 108 185 -23 2351 104 7 3 chrX 63173114 63173422 -99426508 - AluSx SINE Alu -3 309 1 483 292 131 19 chrX 63173426 63173887 -99426043 - L1ME3 LINE L1 -248 5873 5351 531 191 75 34 chrX 63174225 63174394 -99425536 - MIR3 SINE MIR -27 181 7 213 382 70 23 chrX 63174416 63175155 -99424775 + L2 LINE L2 2258 3052 -220 330 292 0 44 chrX 63175340 63175520 -99424410 + MIR SINE MIR 20 188 -62 523 293 32 13 chrX 63175987 63176144 -99423786 + MIR SINE MIR 43 202 -60 701 91 0 0 chrX 63176228 63176316 -99423614 - 5S rRNA rRNA -32 89 2 2426 99 0 0 chrX 63177195 63177498 -99422432 + AluSx SINE Alu 1 303 -9 513 238 18 24 chrX 63177811 63177975 -99421955 + MER103 DNA DNA 3 165 -1 383 264 88 115 chrX 63178311 63178833 -99421097 - MLT1J LTR MaLR -3 508 1 244 152 22 0 chrX 63179241 63179287 -99420643 + L2 LINE L2 3262 3308 -5 21 0 0 0 chrX 63179531 63179552 -99420378 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 63179654 63179675 -99420255 + AT_rich Low_complexity Low_complexity 1 21 0 2236 87 42 0 chrX 63179678 63179967 -99419963 + AluSc SINE Alu 1 301 -8 3500 153 89 15 chrX 63180143 63180165 -99419765 + L1MC3 LINE L1 7054 7073 -712 2329 97 0 3 chrX 63180165 63180465 -99419465 - AluSx SINE Alu -8 304 6 3500 153 89 15 chrX 63180465 63181115 -99418815 + L1MC3 LINE L1 7073 7776 -9 2080 114 14 3 chrX 63181158 63181448 -99418482 + AluSx SINE Alu 1 293 -19 1779 200 43 46 chrX 63181483 63181992 -99417938 + L1ME LINE L1 5194 5708 -456 1852 172 13 0 chrX 63181992 63182294 -99417636 - AluJo SINE Alu -4 308 3 4862 107 10 4 chrX 63182432 63183127 -99416803 - L1PA15 LINE L1 -1 6164 5466 24 53 0 0 chrX 63183234 63183272 -99416658 + AT_rich Low_complexity Low_complexity 1 38 0 1776 147 62 0 chrX 63183547 63183819 -99416111 - AluJo SINE Alu -23 289 1 1584 192 0 103 chrX 63183879 63184296 -99415634 + MLT1A2 LTR MaLR 1 374 0 2919 159 59 23 chrX 63184514 63185012 -99414918 - L1MD3 LINE L1 0 7995 7473 5528 63 10 24 chrX 63185012 63185183 -99414747 - LTR8 LTR ERV1 0 691 519 2409 95 0 0 chrX 63185183 63185488 -99414442 - AluSg SINE Alu -5 305 1 5528 63 10 24 chrX 63185488 63186017 -99413913 - LTR8 LTR ERV1 -172 519 1 2919 159 59 23 chrX 63186017 63186079 -99413851 - L1MD3 LINE L1 -522 7473 7415 315 65 22 0 chrX 63186079 63186125 -99413805 - MADE1 DNA Mariner 0 80 34 424 202 50 40 chrX 63186129 63186228 -99413702 - MLT1F1 LTR MaLR -433 134 35 1496 171 10 30 chrX 63186228 63186526 -99413404 - L1MD3 LINE L1 -879 7116 6825 317 324 48 38 chrX 63186527 63186820 -99413110 - L1 LINE L1 -3174 2972 2677 1834 114 0 0 chrX 63187019 63187256 -99412674 - AluSx SINE Alu -71 241 5 23 0 0 0 chrX 63187912 63187935 -99411995 + AT_rich Low_complexity Low_complexity 1 23 0 1977 122 50 0 chrX 63187935 63188213 -99411717 - AluSx SINE Alu -19 293 2 1990 130 58 20 chrX 63188460 63188806 -99411124 + L1MB7 LINE L1 5666 6024 -160 225 235 174 10 chrX 63190161 63190259 -99409671 - MIR SINE MIR -74 134 21 674 294 45 8 chrX 63190433 63190678 -99409252 - MIR SINE MIR -7 255 2 562 242 91 68 chrX 63191449 63191499 -99408431 - MIR SINE MIR -3 259 212 2359 110 0 0 chrX 63191499 63191809 -99408121 - AluSx SINE Alu -2 310 1 562 242 91 68 chrX 63191809 63192010 -99407920 - MIR SINE MIR -50 212 2 209 303 165 18 chrX 63192871 63192980 -99406950 + L2 LINE L2 3139 3263 -9 701 275 123 3 chrX 63195130 63195505 -99404425 - L1MC5 LINE L1 -31 7930 7511 357 306 31 41 chrX 63195531 63195727 -99404203 - L1ME3A LINE L1 -15 6155 5962 2138 144 3 0 chrX 63195844 63196150 -99403780 - AluJb SINE Alu -5 307 1 1432 194 9 13 chrX 63196156 63196471 -99403459 - L1MD3 LINE L1 -11 7984 7671 262 231 14 0 chrX 63196493 63196567 -99403363 - L1MD3 LINE L1 -287 7708 7542 * 626 235 56 38 chrX 63196563 63196776 -99403154 - L1MC5 LINE L1 -463 7498 7282 527 237 35 47 chrX 63198086 63198255 -99401675 - L1ME4a LINE L1 0 6121 5955 626 247 63 54 chrX 63198277 63198516 -99401414 + MIR SINE MIR 17 257 -5 388 210 179 6 chrX 63198517 63198679 -99401251 - L1ME4a LINE L1 -177 5944 5755 2038 97 4 0 chrX 63199007 63199264 -99400666 - AluSx SINE Alu -54 258 1 1777 209 76 3 chrX 63199412 63199780 -99400150 + MSTD LTR MaLR 2 396 0 399 152 0 0 chrX 63200332 63200411 -99399519 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 378 0 0 0 chrX 63201132 63201174 -99398756 + (TG)n Simple_repeat Simple_repeat 2 43 0 2405 84 3 3 chrX 63201612 63201911 -99398019 + AluSq SINE Alu 1 299 -14 241 240 107 13 chrX 63202245 63202320 -99397610 - Charlie8 DNA MER1_type -989 1428 1347 328 221 84 38 chrX 63202393 63202524 -99397406 - L1MC4 LINE L1 -4 8038 7902 351 0 0 0 chrX 63202835 63202874 -99397056 + (CA)n Simple_repeat Simple_repeat 2 40 0 1515 277 72 14 chrX 63202874 63203504 -99396426 - L1ME3 LINE L1 -259 5903 5240 640 255 24 54 chrX 63203532 63203761 -99396169 + MIR SINE MIR 9 228 -34 1514 122 48 0 chrX 63203786 63204016 -99395914 - L1PA13 LINE L1 -11 6152 5912 247 277 0 12 chrX 63204199 63204282 -99395648 - HAL1 LINE L1 -105 2402 2321 400 171 12 0 chrX 63204282 63204364 -99395566 + L2 LINE L2 3227 3309 -4 227 274 51 71 chrX 63204369 63204400 -99395530 - L1ME3 LINE L1 -924 5222 5192 1823 177 0 0 chrX 63204400 63204709 -99395221 - AluSx SINE Alu 0 309 1 227 274 51 71 chrX 63204709 63204873 -99395057 - L1ME3 LINE L1 -954 5192 5030 1002 231 249 8 chrX 63205183 63205323 -99394607 - L2 LINE L2 0 3313 3208 207 0 0 0 chrX 63205323 63205346 -99394584 + (TATAA)n Simple_repeat Simple_repeat 5 27 0 1002 231 249 8 chrX 63205346 63205628 -99394302 - L2 LINE L2 -105 3208 2791 380 245 55 61 chrX 63205969 63206132 -99393798 - MLT1J LTR MaLR -2 509 348 529 244 54 12 chrX 63206163 63206331 -99393599 + L2 LINE L2 2575 2749 -565 589 191 61 8 chrX 63206331 63206462 -99393468 + L1MC4a LINE L1 5820 5957 -1851 198 132 79 0 chrX 63206465 63206541 -99393389 + (TA)n Simple_repeat Simple_repeat 1 82 0 300 291 22 60 chrX 63206542 63206676 -99393254 + L1MC4a LINE L1 5946 6074 -1734 367 252 22 15 chrX 63206686 63206821 -99393109 + L1MC4 LINE L1 7114 7249 -793 845 234 155 49 chrX 63206968 63207131 -99392799 + L1MC5 LINE L1 7304 7448 -513 1922 151 0 41 chrX 63207131 63207448 -99392482 + 7SLRNA srpRNA srpRNA 2 305 -15 845 234 155 49 chrX 63207448 63207839 -99392091 + L1MC5 LINE L1 7448 7917 -44 1120 276 106 18 chrX 63207849 63208347 -99391583 + L2 LINE L2 2737 3275 -38 2449 91 10 0 chrX 63208362 63208669 -99391261 - AluSg SINE Alu 0 310 1 240 208 0 0 chrX 63208708 63208756 -99391174 + L2 LINE L2 3257 3304 -9 261 0 0 0 chrX 63209885 63209914 -99390016 + (TG)n Simple_repeat Simple_repeat 2 30 0 330 286 85 16 chrX 63209960 63210149 -99389781 - L1ME3 LINE L1 -1488 4658 4457 260 177 0 32 chrX 63210657 63210719 -99389211 + L1MB7 LINE L1 6091 6150 -34 2665 96 5 26 chrX 63210724 63211011 -99388919 - THE1C LTR MaLR -2 373 93 2137 116 0 0 chrX 63211011 63211330 -99388600 + AluSx SINE Alu 1 319 0 2665 96 5 26 chrX 63211330 63211418 -99388512 - THE1C LTR MaLR -282 93 5 8232 115 35 14 chrX 63211420 63211501 -99388429 - THE1C-int LTR MaLR 0 1580 1502 2196 119 3 0 chrX 63211501 63211795 -99388135 - AluSx SINE Alu -17 295 1 8232 115 35 14 chrX 63211795 63212913 -99387017 - THE1C-int LTR MaLR -78 1502 356 * 44991 38 3 0 chrX 63212909 63219046 -99380884 + L1PA4 LINE L1 3 6155 0 2497 68 5 128 chrX 63219051 63219479 -99380451 - THE1C-int LTR MaLR -1205 375 1 2661 90 33 6 chrX 63219479 63219844 -99380086 - THE1C LTR MaLR 0 375 1 195 42 0 0 chrX 63219870 63219894 -99380036 + (A)n Simple_repeat Simple_repeat 1 24 0 2497 202 102 15 chrX 63220672 63221086 -99378844 + L1MD2 LINE L1 5695 6180 -179 186 103 0 0 chrX 63221086 63221115 -99378815 + (CA)n Simple_repeat Simple_repeat 2 30 0 2497 202 102 15 chrX 63221115 63221309 -99378621 + L1MD2 LINE L1 6180 6356 -3 4466 155 54 36 chrX 63221395 63222186 -99377744 - L1MB7 LINE L1 -16 6168 5344 2005 140 3 10 chrX 63222186 63222486 -99377444 - AluJo SINE Alu -14 298 1 4466 155 54 36 chrX 63222486 63223046 -99376884 - L1MB7 LINE L1 -840 5344 4796 292 302 86 23 chrX 63223208 63223421 -99376509 + MIR SINE MIR 14 233 -29 395 358 72 54 chrX 63225495 63225937 -99373993 + L2 LINE L2 2809 3258 -14 201 292 56 22 chrX 63225931 63226020 -99373910 + L2 LINE L2 2955 3046 -226 * 1498 245 77 21 chrX 63226091 63226825 -99373105 - L2 LINE L2 -1 3312 2531 410 314 107 21 chrX 63226827 63226967 -99372963 + L2 LINE L2 3119 3270 -2 209 222 28 0 chrX 63229942 63230014 -99369916 + C-rich Low_complexity Low_complexity 4 77 0 1830 99 16 0 chrX 63230645 63230887 -99369043 + AluY SINE Alu 35 280 -31 207 0 0 0 chrX 63230891 63230914 -99369016 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 786 182 0 0 chrX 63230945 63231077 -99368853 + FLAM_C SINE Alu 1 132 -1 309 244 77 0 chrX 63231753 63231831 -99368099 + L2 LINE L2 3229 3312 -1 213 121 0 0 chrX 63232447 63232480 -99367450 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1488 200 17 21 chrX 63232480 63232905 -99367025 - L1ME LINE L1 -707 5393 4974 1847 153 3 28 chrX 63232929 63233249 -99366681 - AluJo SINE Alu 0 312 1 268 213 0 13 chrX 63233249 63233324 -99366606 - L1ME LINE L1 -1089 4991 4918 1771 174 41 27 chrX 63233324 63233692 -99366238 - L1MA9 LINE L1 0 6312 5940 365 83 0 0 chrX 63233851 63233899 -99366031 - L1MA8 LINE L1 -196 6095 6048 1344 165 25 0 chrX 63233906 63234149 -99365781 - L1ME LINE L1 -3216 2864 2616 2376 144 57 32 chrX 63234150 63234586 -99365344 + Tigger1 DNA MER2_type 2 448 -1970 1095 221 50 47 chrX 63234597 63234769 -99365161 - L1ME LINE L1 -3681 2399 2229 1281 138 78 0 chrX 63234769 63234986 -99364944 - MER46A DNA MER2_type -1 235 2 2419 76 0 0 chrX 63234993 63235284 -99364646 - AluSg SINE Alu -9 301 11 1095 221 50 47 chrX 63235284 63235425 -99364505 - L1ME LINE L1 -3856 2224 2077 * 1227 140 12 73 chrX 63235423 63235602 -99364328 - L1MC/D LINE L1 -743 5403 5333 1789 142 7 65 chrX 63235602 63235912 -99364018 - AluJb SINE Alu -20 292 1 1227 140 12 73 chrX 63235912 63236064 -99363866 - L1MC/D LINE L1 -813 5333 5173 254 213 33 0 chrX 63236053 63236114 -99363816 - L1ME LINE L1 -4314 1947 1885 * 2500 48 0 48 chrX 63236137 63236453 -99363477 + AluY SINE Alu 1 301 -10 1207 258 40 9 chrX 63236456 63236917 -99363013 + MLT1F1 LTR MaLR 1 558 -9 2705 276 60 25 chrX 63236917 63238483 -99361447 - L1ME LINE L1 -4388 1873 198 1971 158 0 0 chrX 63238615 63238912 -99361018 - AluJb SINE Alu -14 298 2 21 0 0 0 chrX 63238917 63238938 -99360992 + AT_rich Low_complexity Low_complexity 1 21 0 266 233 47 23 chrX 63238947 63239033 -99360897 + MIR SINE MIR 104 191 -71 713 149 0 25 chrX 63239033 63239154 -99360776 + FLAM_C SINE Alu 1 118 -25 2468 63 3 3 chrX 63239251 63239551 -99360379 + AluSq SINE Alu 1 300 -13 196 309 162 0 chrX 63239666 63239734 -99360196 - L2 LINE L2 -27 3286 3208 722 210 18 30 chrX 63239750 63239917 -99360013 - L1ME LINE L1 -5900 170 6 219 150 0 0 chrX 63240324 63240364 -99359566 + (A)n Simple_repeat Simple_repeat 1 40 0 2240 111 0 0 chrX 63240841 63241139 -99358791 - AluSx SINE Alu -14 298 1 2427 71 3 0 chrX 63241265 63241560 -99358370 - AluSp SINE Alu -13 300 5 208 157 59 0 chrX 63242419 63242470 -99357460 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 204 200 13 53 chrX 63242984 63243059 -99356871 + CT-rich Low_complexity Low_complexity 5 76 0 2143 91 40 0 chrX 63243077 63243352 -99356578 - AluSx SINE Alu -19 293 8 203 254 119 0 chrX 63244263 63244330 -99355600 - L3 LINE CR1 -30 1547 1473 207 330 42 42 chrX 63244330 63244448 -99355482 - L3 LINE CR1 -348 1229 1112 * 1181 270 92 47 chrX 63244445 63245266 -99354664 - L2 LINE L2 -6 3307 2447 230 243 14 95 chrX 63245479 63245553 -99354377 + Charlie4 DNA MER1_type 1890 1957 -4 2357 104 0 0 chrX 63245553 63245860 -99354070 + AluSc SINE Alu 1 307 -2 2143 130 13 0 chrX 63246302 63246601 -99353329 - AluSx SINE Alu -9 303 1 818 98 36 0 chrX 63247177 63247289 -99352641 + AluSp SINE Alu 1 116 -197 2487 66 3 3 chrX 63247289 63247594 -99352336 + AluY SINE Alu 1 305 -6 1724 170 28 3 chrX 63247686 63247974 -99351956 - AluJo SINE Alu -17 295 1 2019 142 7 3 chrX 63248165 63248460 -99351470 - AluJb SINE Alu -16 296 1 542 245 48 37 chrX 63248499 63248681 -99351249 + MIR SINE MIR 30 212 -50 259 258 97 40 chrX 63248706 63248830 -99351100 - MIR3 SINE MIR -74 134 4 2150 117 0 10 chrX 63249148 63249447 -99350483 - AluSg SINE Alu -14 296 1 613 311 139 18 chrX 63250228 63250668 -99349262 - L2 LINE L2 -12 3301 2809 691 303 100 8 chrX 63250698 63251058 -99348872 - L2 LINE L2 -705 2609 2217 2203 88 57 3 chrX 63251169 63251466 -99348464 - AluSq SINE Alu 0 313 1 795 231 130 15 chrX 63251535 63252008 -99347922 + L1ME4a LINE L1 5563 6118 -3 1896 123 36 36 chrX 63252010 63252312 -99347618 - AluJb SINE Alu -10 302 1 1863 156 0 10 chrX 63252363 63252658 -99347272 - AluSx SINE Alu -18 294 3 189 0 0 0 chrX 63252738 63252759 -99347171 + (T)n Simple_repeat Simple_repeat 1 21 0 404 247 174 11 chrX 63252897 63253075 -99346855 + L2 LINE L2 3107 3313 0 314 294 114 26 chrX 63253085 63253357 -99346573 + L2 LINE L2 2245 2540 -774 2051 124 10 3 chrX 63253503 63253824 -99346106 + AluSq SINE Alu 1 313 0 213 326 92 0 chrX 63253884 63253982 -99345948 - MIR SINE MIR 0 262 156 1562 119 18 0 chrX 63253982 63254208 -99345722 - Tigger5 DNA MER2_type 0 2323 2094 424 244 0 0 chrX 63254210 63254292 -99345638 - Tigger5 DNA MER2_type -2241 82 1 506 255 28 7 chrX 63254292 63254433 -99345497 - MIR SINE MIR -105 157 14 656 264 34 19 chrX 63254437 63254645 -99345285 - MIR SINE MIR 0 262 52 511 270 34 100 chrX 63254833 63255214 -99344716 + L2 LINE L2 2916 3271 -1 1517 169 49 3 chrX 63257541 63257849 -99342081 + MER33 DNA MER1_type 3 324 0 190 42 0 0 chrX 63258446 63258470 -99341460 - MER5B DNA MER1_type -129 49 26 1853 148 0 32 chrX 63258785 63259096 -99340834 - AluJb SINE Alu -11 301 1 2208 79 41 3 chrX 63259235 63259526 -99340404 + AluSx SINE Alu 1 302 -10 495 125 0 0 chrX 63259865 63259937 -99339993 + AluJ/FLAM SINE Alu 2 73 -239 205 195 0 0 chrX 63259938 63259979 -99339951 + MIR SINE MIR 65 105 -157 578 337 56 53 chrX 63260308 63260682 -99339248 + L2 LINE L2 2896 3270 -2 219 261 0 15 chrX 63260693 63260758 -99339172 - MIR SINE MIR 0 262 199 1095 172 104 70 chrX 63260758 63261198 -99338732 + LTR48 LTR ERV1 1 435 -160 1442 85 5 33 chrX 63261201 63261413 -99338517 + LTR26 LTR ERV1 1 206 -397 2956 193 142 11 chrX 63261603 63262334 -99337596 + LTR28 LTR ERV1 1 827 -193 291 279 7 64 chrX 63262419 63262559 -99337371 + MER52A LTR ERV1 1606 1737 -18 1953 117 64 0 chrX 63263395 63263704 -99336226 + AluSx SINE Alu 1 326 0 2184 125 0 3 chrX 63264675 63264988 -99334942 + AluSx SINE Alu 1 312 0 2076 95 95 0 chrX 63265171 63265454 -99334476 + AluSp SINE Alu 2 311 -2 2446 151 24 64 chrX 63266101 63266604 -99333326 + LTR19A LTR ERV1 1 483 -3 10313 58 9 81 chrX 63266604 63268097 -99331833 - SVA Other Other 0 1386 2 216 0 0 0 chrX 63268098 63268122 -99331808 + (GGGAGA)n Simple_repeat Simple_repeat 2 25 0 2237 111 6 22 chrX 63268130 63268445 -99331485 - AluSq SINE Alu -3 310 1 3146 89 0 0 chrX 63268530 63268934 -99330996 + MLT2A1 LTR ERVL 1 404 -40 351 59 78 0 chrX 63268962 63269013 -99330917 + MLT2A1 LTR ERVL 390 444 0 2716 114 21 3 chrX 63271084 63271470 -99328460 + LTR26 LTR ERV1 211 603 0 386 199 54 60 chrX 63271470 63271638 -99328292 + MER34 LTR ERV1 455 542 0 418 247 63 81 chrX 63271737 63271867 -99328063 + MER34-int LTR ERV1 90 221 -6110 2025 157 3 0 chrX 63271867 63272172 -99327758 - AluSx SINE Alu -6 306 1 418 247 63 81 chrX 63272172 63272312 -99327618 + MER34-int LTR ERV1 221 355 -5976 * 1271 219 60 47 chrX 63272282 63272807 -99327123 + LTR48-int LTR ERV1 355 2538 -4880 2458 106 40 93 chrX 63272807 63272861 -99327069 + MSTA LTR MaLR 1 56 -372 2280 110 3 0 chrX 63272861 63273170 -99326760 + AluSq SINE Alu 1 310 -3 2458 106 40 93 chrX 63273170 63273567 -99326363 + MSTA LTR MaLR 56 428 0 524 132 0 0 chrX 63273567 63273643 -99326287 - LTR51 LTR ERV1 -595 76 1 492 226 30 30 chrX 63273749 63273913 -99326017 + LTR48-int LTR ERV1 989 1152 -5179 300 183 73 0 chrX 63274087 63274169 -99325761 + LTR48-int LTR ERV1 1290 1377 -4954 489 199 51 70 chrX 63274371 63274527 -99325403 + LTR48-int LTR ERV1 1377 1529 -4802 249 87 196 0 chrX 63275057 63275103 -99324827 + MER67D LTR ERV1 105 159 -355 2123 100 43 7 chrX 63275202 63275503 -99324427 - AluSx SINE Alu 0 312 1 812 168 133 64 chrX 63275505 63275553 -99324377 + LTR48-int LTR ERV1 790 833 -4103 2341 101 3 3 chrX 63275553 63275859 -99324071 + AluSx SINE Alu 1 306 -6 812 168 133 64 chrX 63275859 63276093 -99323837 + LTR48-int LTR ERV1 833 1161 -3775 2169 116 0 0 chrX 63276113 63276405 -99323525 - AluSx SINE Alu -20 292 1 1034 118 0 0 chrX 63276405 63276540 -99323390 - AluSq/x SINE Alu -177 135 1 879 229 149 85 chrX 63276545 63276591 -99323339 + LTR48-int LTR ERV1 1200 1242 -3694 1406 197 17 27 chrX 63276591 63276890 -99323040 + AluJo SINE Alu 1 296 -16 879 229 149 85 chrX 63276890 63277166 -99322764 + LTR48-int LTR ERV1 1242 1499 -3437 2351 101 3 0 chrX 63277166 63277464 -99322466 + AluSx SINE Alu 3 301 -11 879 229 149 85 chrX 63277464 63277971 -99321959 + LTR48-int LTR ERV1 1499 2096 -2840 1578 143 82 90 chrX 63277971 63278176 -99321754 - THE1C LTR MaLR 0 375 173 1962 138 20 7 chrX 63278176 63278472 -99321458 + AluSx SINE Alu 1 300 -12 1578 143 82 90 chrX 63278472 63278643 -99321287 - THE1C LTR MaLR -202 173 2 879 229 149 85 chrX 63278643 63278721 -99321209 + LTR48-int LTR ERV1 2096 2168 -2768 2242 158 15 25 chrX 63278777 63279170 -99320760 - LTR10E LTR ERV1 -31 602 214 298 222 25 12 chrX 63279244 63279325 -99320605 - LTR10E LTR ERV1 -551 82 1 639 207 42 81 chrX 63279406 63279756 -99320174 + LTR48-int LTR ERV1 2392 4497 -2237 3933 172 47 30 chrX 63279788 63280017 -99319913 + LTR48-int LTR ERV1 4608 4832 -1499 2321 91 3 3 chrX 63280017 63280313 -99319617 + AluSx SINE Alu 1 296 -16 3933 172 47 30 chrX 63280313 63280931 -99318999 + LTR48-int LTR ERV1 4832 5446 -885 1302 97 17 0 chrX 63280932 63281107 -99318823 - AluSg/x SINE Alu -3 309 132 2659 157 34 90 chrX 63281107 63281700 -99318230 + LTR48-int LTR ERV1 4135 4759 -1552 2329 89 0 46 chrX 63281700 63282025 -99317905 + AluSx SINE Alu 1 310 -2 2659 157 34 90 chrX 63282025 63282215 -99317715 + LTR48-int LTR ERV1 4759 6152 -159 609 214 125 47 chrX 63282307 63282872 -99317058 + LTR48 LTR ERV1 1 783 -4 2371 96 0 13 chrX 63282907 63283221 -99316709 + AluSq SINE Alu 1 310 -3 1326 214 138 12 chrX 63283314 63283655 -99316275 - MSTD LTR MaLR -12 384 1 451 143 93 107 chrX 63283660 63283800 -99316130 - MIR SINE MIR -122 140 3 302 268 94 39 chrX 63283967 63284094 -99315836 - L2 LINE L2 -3 3269 3136 1667 148 7 11 chrX 63284198 63284468 -99315462 - AluJo SINE Alu -43 269 1 447 208 89 10 chrX 63284565 63284666 -99315264 - L2 LINE L2 -1 3312 3204 245 247 62 0 chrX 63284802 63284883 -99315047 - MER113 DNA MER1_type? -5 516 431 218 279 0 0 chrX 63285343 63285404 -99314526 - MIR SINE MIR -14 248 188 318 208 104 0 chrX 63285539 63285616 -99314314 + MIR3 SINE MIR 81 165 -43 353 252 171 0 chrX 63285837 63285948 -99313982 - L1MD1 LINE L1 -14 6228 6099 1578 169 11 0 chrX 63285954 63286215 -99313715 + AluJb SINE Alu 1 264 -48 29 0 0 0 chrX 63286223 63286252 -99313678 + AT_rich Low_complexity Low_complexity 1 29 0 28856 25 0 0 chrX 63286252 63290405 -99309525 - L1PA3 LINE L1 0 6155 2004 5015 29 0 0 chrX 63290386 63291002 -99308928 - L1P LINE L1 -2672 3474 2859 * 2729 167 63 2 chrX 63291050 63291106 -99308824 - L1MD2 LINE L1 -152 6207 6156 255 61 0 0 chrX 63291106 63291139 -99308791 + (TG)n Simple_repeat Simple_repeat 2 34 0 2729 167 63 2 chrX 63291139 63291586 -99308344 - L1MD2 LINE L1 -203 6156 5673 1056 227 7 19 chrX 63291594 63291863 -99308067 - L1MD2 LINE L1 -964 5182 4917 215 56 56 0 chrX 63292000 63292036 -99307894 + A-rich Low_complexity Low_complexity 2 39 0 632 176 0 23 chrX 63292054 63292185 -99307745 - L1MD2 LINE L1 -1238 4908 4781 206 200 300 11 chrX 63292194 63292284 -99307646 + MIR SINE MIR 21 136 -126 * 1133 251 129 18 chrX 63292260 63292771 -99307159 + L2 LINE L2 2739 3312 -1 261 196 0 0 chrX 63292773 63292829 -99307101 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 2251 115 0 0 chrX 63293093 63293389 -99306541 - AluSx SINE Alu -14 298 3 518 272 20 45 chrX 63293654 63293856 -99306074 + MIR SINE MIR 47 243 -19 196 317 94 45 chrX 63293974 63294373 -99305557 - L2 LINE L2 -212 3060 2644 2271 96 0 23 chrX 63294529 63294868 -99305062 - AluSx SINE Alu 0 312 1 1173 71 0 0 chrX 63295608 63295749 -99304181 + AluSq/x SINE Alu 1 141 -171 2339 98 0 7 chrX 63295750 63296056 -99303874 + AluSx SINE Alu 1 304 -8 507 260 78 7 chrX 63296111 63296265 -99303665 - MIR SINE MIR -49 213 49 2418 84 3 13 chrX 63296269 63296577 -99303353 - AluSp SINE Alu -8 305 1 398 226 8 57 chrX 63296903 63297027 -99302903 + MIR3 SINE MIR 90 207 -1 250 240 240 22 chrX 63297138 63297272 -99302658 + MIR3 SINE MIR 14 172 -67 425 296 169 34 chrX 63299610 63299877 -99300053 - L3 LINE CR1 -98 1479 1177 385 200 317 0 chrX 63299899 63300019 -99299911 + MIR SINE MIR 105 262 0 207 311 0 0 chrX 63300086 63300147 -99299783 + L2 LINE L2 3200 3260 -12 327 231 144 0 chrX 63300156 63300260 -99299670 - L3 LINE CR1 -402 1175 1057 355 175 22 15 chrX 63300680 63300817 -99299113 + GA-rich Low_complexity Low_complexity 1 138 0 437 219 9 0 chrX 63300875 63300989 -99298941 + GA-rich Low_complexity Low_complexity 2 116 0 487 256 119 6 chrX 63302526 63302702 -99297228 - MIR SINE MIR -10 252 57 1955 115 0 81 chrX 63302933 63303059 -99296871 - AluJb SINE Alu -9 303 168 2207 109 0 0 chrX 63303059 63303344 -99296586 - AluSx SINE Alu -16 296 12 1955 115 0 81 chrX 63303344 63303540 -99296390 - AluJb SINE Alu -144 168 7 833 92 84 15 chrX 63304197 63304328 -99295602 + FLAM_C SINE Alu 1 140 -3 2234 112 0 3 chrX 63304332 63304628 -99295302 + AluJb SINE Alu 1 295 -17 2178 90 11 7 chrX 63304722 63305000 -99294930 - AluSg SINE Alu -31 279 1 29 28 0 0 chrX 63305000 63305036 -99294894 + AT_rich Low_complexity Low_complexity 1 36 0 403 227 288 0 chrX 63305301 63305433 -99294497 + MER5A DNA MER1_type 19 188 -1 608 201 29 94 chrX 63305873 63306117 -99293813 - L3 LINE CR1 -91 1486 1259 1328 112 147 84 chrX 63306141 63306426 -99293504 - MER54B LTR ERVL 0 793 491 2368 91 3 0 chrX 63306701 63307010 -99292920 + AluSg SINE Alu 1 310 0 348 238 0 0 chrX 63307059 63307143 -99292787 - L3 LINE CR1 -348 1229 1146 907 224 95 17 chrX 63307814 63308046 -99291884 - MIR SINE MIR -2 260 11 203 257 0 57 chrX 63308069 63308139 -99291791 + MER5A DNA MER1_type 14 79 -110 335 283 17 17 chrX 63308223 63308343 -99291587 - MER5A DNA MER1_type -7 182 63 720 226 24 0 chrX 63308753 63308921 -99291009 + MIR SINE MIR 89 260 -2 458 236 6 54 chrX 63309040 63309212 -99290718 - L1ME3A LINE L1 -1 6169 6006 38 39 0 0 chrX 63310570 63310622 -99289308 + AT_rich Low_complexity Low_complexity 1 52 0 345 62 0 0 chrX 63310705 63310753 -99289177 + (TC)n Simple_repeat Simple_repeat 1 48 0 222 37 0 0 chrX 63310760 63310787 -99289143 + (CA)n Simple_repeat Simple_repeat 1 27 0 1735 164 0 35 chrX 63310924 63311211 -99288719 - AluJb SINE Alu -35 277 1 2036 110 10 7 chrX 63312119 63312409 -99287521 + AluSx SINE Alu 3 293 -19 4685 65 3 5 chrX 63312483 63313068 -99286862 + LTR10C LTR ERV1 1 584 -7 289 301 158 6 chrX 63313103 63313286 -99286644 - MLT1K LTR MaLR -377 211 1 187 291 68 58 chrX 63314182 63314285 -99285645 - L3 LINE CR1 -141 1436 1333 2254 150 26 26 chrX 63315289 63315503 -99284427 + L1MB3 LINE L1 5762 5978 -205 2434 87 0 0 chrX 63315503 63315801 -99284129 + AluSg SINE Alu 1 298 -12 2254 150 26 26 chrX 63315801 63316007 -99283923 + L1MB3 LINE L1 5977 6182 -1 2287 110 0 7 chrX 63316019 63316318 -99283612 + AluSx SINE Alu 1 297 -15 310 227 41 10 chrX 63316415 63316512 -99283418 - L1ME3A LINE L1 -2019 5789 5690 5035 58 21 36 chrX 63316534 63316765 -99283165 - PABL_A LTR ERV1 0 660 427 2224 103 3 0 chrX 63316765 63317055 -99282875 - AluSg SINE Alu -17 293 3 5035 58 21 36 chrX 63317055 63317314 -99282616 - PABL_A LTR ERV1 -233 427 180 2301 99 0 10 chrX 63317314 63317616 -99282314 + AluSx SINE Alu 1 299 -13 5035 58 21 36 chrX 63317616 63317794 -99282136 - PABL_A LTR ERV1 -480 180 1 625 276 90 22 chrX 63317974 63318242 -99281688 - L1ME3A LINE L1 -2125 5683 5398 506 333 47 58 chrX 63318713 63319073 -99280857 + L1ME4a LINE L1 4865 5221 -925 1911 118 82 0 chrX 63319073 63319343 -99280587 - AluSg SINE Alu -18 292 1 506 333 47 58 chrX 63319343 63319409 -99280521 + L1ME4a LINE L1 5221 5286 -860 2274 119 3 3 chrX 63319420 63319732 -99280198 + AluSx SINE Alu 1 312 0 1610 156 4 14 chrX 63319817 63320092 -99279838 + L1PA16 LINE L1 5895 6166 0 303 284 125 0 chrX 63320119 63320207 -99279723 + L1ME4a LINE L1 5373 5471 -2337 722 234 66 12 chrX 63320307 63320563 -99279367 + L1ME4a LINE L1 5614 5883 -238 684 256 46 63 chrX 63320884 63320935 -99278995 - MIR SINE MIR 0 262 212 2223 121 3 0 chrX 63320935 63321240 -99278690 - AluSq SINE Alu -5 308 3 684 256 46 63 chrX 63321240 63321426 -99278504 - MIR SINE MIR -50 212 29 1073 153 11 16 chrX 63326305 63326479 -99273451 - AluSg/x SINE Alu -3 307 133 2308 66 17 0 chrX 63326479 63326768 -99273162 - AluSg SINE Alu -16 294 1 1073 153 11 16 chrX 63326768 63326783 -99273147 - AluSg/x SINE Alu -177 133 119 22 0 0 0 chrX 63326975 63326997 -99272933 + GC_rich Low_complexity Low_complexity 1 22 0 203 213 21 0 chrX 63327008 63327055 -99272875 + A-rich Low_complexity Low_complexity 2 49 0 2064 92 33 4 chrX 63328632 63328903 -99271027 - AluSx SINE Alu -33 279 1 470 134 257 24 chrX 63328908 63329032 -99270898 - L1MC/D LINE L1 -880 5873 5707 1084 183 142 44 chrX 63329032 63329238 -99270692 - AluJo SINE Alu -1 301 60 1733 149 0 4 chrX 63329238 63329499 -99270431 + AluSx SINE Alu 2 261 -51 1084 183 142 44 chrX 63329499 63329566 -99270364 - AluJo SINE Alu -242 60 1 470 134 257 24 chrX 63329566 63329589 -99270341 - L1MC/D LINE L1 -1046 5707 5691 279 140 0 0 chrX 63329589 63329639 -99270291 + (TC)n Simple_repeat Simple_repeat 2 51 0 2100 118 0 0 chrX 63329666 63329945 -99269985 - AluSx SINE Alu -9 303 25 1117 90 0 14 chrX 63329976 63330121 -99269809 - FLAM_C SINE Alu 0 143 1 5734 238 30 20 chrX 63330122 63331907 -99268023 - L1MC/D LINE L1 -1540 5000 3198 1441 121 24 25 chrX 63331907 63332263 -99267667 + MSTA LTR MaLR 1 394 -34 923 105 30 0 chrX 63332263 63332396 -99267534 - AluSg/x SINE Alu -8 304 168 801 173 0 0 chrX 63332398 63332531 -99267399 - AluJo/FLAM SINE Alu -169 133 1 1355 252 10 15 chrX 63332579 63332988 -99266942 - L1MC/D LINE L1 -3339 3201 2795 1921 175 72 12 chrX 63332988 63333388 -99266542 - L1MC/D LINE L1 -6086 454 31 537 224 41 14 chrX 63334843 63334990 -99264940 - L2 LINE L2 -2 3311 3161 2331 48 0 0 chrX 63334992 63335261 -99264669 + AluY SINE Alu 38 306 -5 849 143 15 84 chrX 63336083 63336286 -99263644 + MER53 DNA DNA 1 189 0 193 266 0 89 chrX 63336300 63336379 -99263551 + L3 LINE CR1 1263 1334 -243 214 308 173 0 chrX 63336936 63337040 -99262890 - MIR SINE MIR -60 202 81 260 203 106 73 chrX 63337066 63337189 -99262741 - L2 LINE L2 -5 3267 3141 1096 254 160 59 chrX 63337515 63338287 -99261643 + L2 LINE L2 2469 3302 -11 2177 119 0 3 chrX 63338550 63338844 -99261086 - AluSx SINE Alu -8 304 12 2076 85 4 4 chrX 63338847 63339106 -99260824 - AluSp SINE Alu -19 294 36 283 149 70 18 chrX 63339242 63339356 -99260574 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 1051 175 0 0 chrX 63339490 63339656 -99260274 - FRAM SINE Alu -10 166 1 832 251 40 16 chrX 63339708 63339959 -99259971 - L1ME2 LINE L1 0 6164 5908 411 259 28 9 chrX 63340682 63340790 -99259140 + MER81 DNA DNA 1 110 -4 221 329 0 0 chrX 63340835 63340911 -99259019 + (TG)n Simple_repeat Simple_repeat 1 76 0 420 276 0 0 chrX 63341415 63341513 -99258417 + MIR SINE MIR 47 144 -118 565 269 35 12 chrX 63341524 63341695 -99258235 - MLT1I LTR MaLR 0 409 235 351 253 47 27 chrX 63341795 63341945 -99257985 - L1ME2 LINE L1 -2350 5458 5306 224 307 93 27 chrX 63341945 63342095 -99257835 - L2 LINE L2 -251 3021 2862 243 163 0 0 chrX 63342097 63342140 -99257790 + L2 LINE L2 3271 3313 0 * 655 291 98 34 chrX 63342136 63342524 -99257406 - L2 LINE L2 -444 2870 2458 333 200 158 32 chrX 63342877 63342972 -99256958 - MIR SINE MIR -100 162 56 1081 223 129 11 chrX 63343154 63343526 -99256404 - HAL1 LINE L1 -85 2422 2007 2194 128 3 0 chrX 63343806 63344103 -99255827 + AluSx SINE Alu 1 298 -14 280 254 100 96 chrX 63344275 63344495 -99255435 - HAL1 LINE L1 -463 2044 1824 681 236 7 0 chrX 63344499 63344647 -99255283 + MER96 DNA MER1_type? 27 175 0 1022 206 5 0 chrX 63344654 63344853 -99255077 - HAL1 LINE L1 -722 1785 1586 883 289 32 56 chrX 63344941 63345350 -99254580 - HAL1 LINE L1 -2107 400 2 361 267 44 0 chrX 63346661 63346751 -99253179 + MER91C DNA MER1_type 46 139 -1 26 30 0 0 chrX 63347601 63347634 -99252296 + AT_rich Low_complexity Low_complexity 1 33 0 410 291 76 41 chrX 63349170 63349342 -99250588 + MIR SINE MIR 28 205 -57 307 273 0 68 chrX 63350367 63350455 -99249475 + MIR SINE MIR 71 153 -55 1651 75 26 31 chrX 63350621 63350849 -99249081 - MER30 DNA MER1_type 0 230 4 468 231 0 50 chrX 63351631 63351752 -99248178 + MIR3 SINE MIR 89 203 -5 191 245 108 39 chrX 63352874 63352976 -99246954 + MIR SINE MIR 14 122 -140 237 258 16 16 chrX 63353847 63353909 -99246021 - L3 LINE CR1 -3 1574 1513 216 0 0 0 chrX 63356776 63356800 -99243130 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2281 108 0 13 chrX 63358223 63358530 -99241400 - AluSx SINE Alu -5 307 5 506 240 85 30 chrX 63359182 63359382 -99240548 + MIR SINE MIR 7 217 -45 221 210 0 8 chrX 63359427 63359484 -99240446 + MIR SINE MIR 100 151 -57 268 176 20 0 chrX 63359736 63359787 -99240143 + MIR3 SINE MIR 151 202 -6 561 231 35 35 chrX 63360219 63360362 -99239568 + MIR SINE MIR 64 206 -56 257 276 143 0 chrX 63361362 63361460 -99238470 + L2 LINE L2 3114 3225 -88 2416 79 0 0 chrX 63362678 63362970 -99236960 - AluSx SINE Alu -20 292 1 254 243 68 0 chrX 63363278 63363352 -99236578 - L2 LINE L2 -194 3078 3000 282 306 13 26 chrX 63363584 63363725 -99236205 + GA-rich Low_complexity Low_complexity 1 229 0 723 279 88 36 chrX 63363762 63364067 -99235863 - L3b LINE CR1 -114 1469 1149 560 309 51 11 chrX 63364863 63365038 -99234892 + MIR3 SINE MIR 16 197 -11 180 77 0 0 chrX 63365729 63365755 -99234175 + (TGAG)n Simple_repeat Simple_repeat 3 28 0 1237 111 0 0 chrX 63366870 63367032 -99232898 + AluSq SINE Alu 150 311 -2 2353 82 3 0 chrX 63367875 63368200 -99231730 + AluY SINE Alu 1 326 0 192 77 0 0 chrX 63368833 63368859 -99231071 + (TCTCC)n Simple_repeat Simple_repeat 4 29 0 213 154 0 0 chrX 63369519 63369558 -99230372 + (CATA)n Simple_repeat Simple_repeat 4 42 0 282 213 113 0 chrX 63369744 63369824 -99230106 - L1MC/D LINE L1 -2019 5789 5701 218 216 45 11 chrX 63369836 63369924 -99230006 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 2526 47 0 7 chrX 63369937 63370235 -99229695 - AluY SINE Alu -15 296 1 309 397 34 15 chrX 63370334 63370538 -99229392 - L1M4 LINE L1 -996 5150 4943 16624 214 23 21 chrX 63370610 63374917 -99225013 - L1PB3 LINE L1 -3 7589 3289 2315 109 0 0 chrX 63374917 63375220 -99224710 - AluSx SINE Alu -9 303 1 16624 214 23 21 chrX 63375220 63377789 -99222141 - L1PB3 LINE L1 -4303 3289 725 193 258 216 10 chrX 63378540 63378637 -99221293 + MIR3 SINE MIR 49 165 -43 10654 198 55 36 chrX 63378687 63378963 -99220967 + L1MCa LINE L1 1705 1974 -4452 1671 102 0 0 chrX 63378963 63379178 -99220752 + AluSg/x SINE Alu 82 296 -14 10654 198 55 36 chrX 63379178 63379506 -99220424 + L1MCa LINE L1 1974 2294 -4132 2190 124 39 33 chrX 63379506 63379868 -99220062 + THE1B LTR MaLR 1 364 0 10654 198 55 36 chrX 63379868 63380624 -99219306 + L1MCa LINE L1 2294 3034 -3392 2102 130 0 7 chrX 63380624 63380963 -99218967 + AluSx SINE Alu 1 312 0 10654 198 55 36 chrX 63380963 63381698 -99218232 + L1MCa LINE L1 3034 3754 -2672 710 122 9 0 chrX 63381698 63381805 -99218125 + L1PA16 LINE L1 6050 6157 -9 10654 198 55 36 chrX 63381805 63382859 -99217071 + L1MCa LINE L1 3754 4944 -1482 2385 139 19 0 chrX 63382859 63383227 -99216703 - THE1C LTR MaLR 0 375 1 10654 198 55 36 chrX 63383227 63383920 -99216010 + L1MCa LINE L1 4944 5623 -803 4155 129 11 6 chrX 63383919 63384631 -99215299 + L1MC2 LINE L1 5283 5998 -346 * 298 163 50 75 chrX 63384616 63384696 -99215234 + L1MC2 LINE L1 6242 6319 -25 * 25 0 0 0 chrX 63384703 63384728 -99215202 + AT_rich Low_complexity Low_complexity 1 25 0 484 320 191 30 chrX 63384820 63385123 -99214807 + L2 LINE L2 2920 3271 -1 24 0 0 0 chrX 63385338 63385362 -99214568 + AT_rich Low_complexity Low_complexity 1 24 0 1734 159 24 17 chrX 63385405 63385695 -99214235 - AluJo SINE Alu -20 292 1 533 233 38 13 chrX 63386654 63386813 -99213117 + MER103 DNA DNA 2 164 -2 801 226 63 50 chrX 63386890 63387129 -99212801 + MIR SINE MIR 20 261 -1 421 250 29 52 chrX 63387263 63387399 -99212531 + MIR3 SINE MIR 35 167 -41 491 208 20 0 chrX 63387752 63387853 -99212077 - MIR3 SINE MIR -42 166 64 208 351 53 11 chrX 63388238 63388332 -99211598 + L2 LINE L2 2112 2209 -1105 881 222 0 0 chrX 63388442 63388618 -99211312 - MER5B DNA MER1_type -1 177 2 663 242 68 41 chrX 63389629 63389848 -99210082 + MIR SINE MIR 12 236 -26 1015 297 79 13 chrX 63390178 63390798 -99209132 - L1M4 LINE L1 -1897 4249 3589 2295 121 0 10 chrX 63390866 63391180 -99208750 - AluSq SINE Alu -2 311 1 2121 133 14 11 chrX 63391542 63391896 -99208034 - THE1A LTR MaLR 0 355 1 12261 80 6 3 chrX 63391896 63393471 -99206459 - THE1A-int LTR MaLR 0 1580 1 1782 120 76 38 chrX 63393471 63393813 -99206117 - THE1A LTR MaLR 0 355 1 239 87 43 0 chrX 63394708 63394754 -99205176 + A-rich Low_complexity Low_complexity 5 52 0 469 241 102 54 chrX 63395894 63396060 -99203870 + MER5A DNA MER1_type 11 184 -5 425 302 121 11 chrX 63396193 63396375 -99203555 - MIR SINE MIR -56 206 5 513 309 89 25 chrX 63396894 63397130 -99202800 + MIR SINE MIR 2 252 -10 240 82 49 33 chrX 63397290 63397351 -99202579 + T-rich Low_complexity Low_complexity 4 65 0 483 239 48 48 chrX 63397434 63397664 -99202266 + L1ME3A LINE L1 4883 5112 -1034 958 288 41 23 chrX 63397705 63398143 -99201787 + L1ME3A LINE L1 5492 5937 -233 965 239 43 22 chrX 63398182 63398458 -99201472 + L1MDa LINE L1 61 342 -6198 310 313 42 31 chrX 63398655 63398751 -99201179 + L1MDa LINE L1 329 425 -6118 1974 225 58 13 chrX 63399030 63399635 -99200295 + L1MDa LINE L1 835 1466 -5077 1804 212 53 53 chrX 63399618 63400582 -99199348 + L1MDa LINE L1 135 1253 -5287 * 1589 184 121 90 chrX 63400590 63401599 -99198331 - L1MDb LINE L1 -4983 1557 564 180 0 0 0 chrX 63401611 63401631 -99198299 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2398 78 0 0 chrX 63401641 63401937 -99197993 - AluSx SINE Alu -16 296 1 2857 101 25 2 chrX 63401961 63402395 -99197535 - L1MA2 LINE L1 0 6304 5861 893 261 76 25 chrX 63402785 63403180 -99196750 - L1MDb LINE L1 -6123 417 3 43 0 0 0 chrX 63403180 63403223 -99196707 + AT_rich Low_complexity Low_complexity 1 43 0 22280 23 0 0 chrX 63403223 63406632 -99193298 - L1PA2 LINE L1 0 6155 2747 9916 27 0 0 chrX 63406635 63407871 -99192059 + L1PA2 LINE L1 1533 2768 -3378 835 240 97 9 chrX 63408624 63408841 -99191089 + MIR SINE MIR 14 249 -13 264 258 164 57 chrX 63409670 63409829 -99190101 + MIR SINE MIR 84 259 -3 4148 189 35 4 chrX 63410582 63411627 -99188303 + L1MB4 LINE L1 5108 6180 0 1855 143 26 9 chrX 63411627 63411972 -99187958 + L1MB8 LINE L1 5814 6169 -9 1878 154 0 57 chrX 63411978 63412309 -99187621 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 63412316 63412351 -99187579 + AT_rich Low_complexity Low_complexity 1 35 0 1067 133 4 34 chrX 63414591 63414825 -99185105 - Charlie5 DNA MER1_type -10 2602 2376 5866 121 27 50 chrX 63414875 63415021 -99184909 - L1PA16 LINE L1 -9 6157 6009 195 42 0 0 chrX 63415021 63415045 -99184885 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 5866 121 27 50 chrX 63415045 63416227 -99183703 - L1PA16 LINE L1 -157 6009 4873 23 0 0 0 chrX 63416468 63416491 -99183439 + AT_rich Low_complexity Low_complexity 1 23 0 571 253 14 6 chrX 63416660 63416830 -99183100 - L1ME3A LINE L1 -293 5877 5722 225 83 0 0 chrX 63417483 63417519 -99182411 + (CTTAG)n Simple_repeat Simple_repeat 1 36 0 454 287 76 32 chrX 63417782 63417939 -99181991 - MIR SINE MIR -73 189 26 195 254 51 17 chrX 63419918 63419977 -99179953 - MIR SINE MIR -46 216 156 610 258 72 10 chrX 63420102 63420296 -99179634 - MIR SINE MIR -2 260 55 1690 162 26 29 chrX 63420379 63420688 -99179242 - AluJo SINE Alu -4 308 1 226 338 5 121 chrX 63422287 63422494 -99177436 + L2 LINE L2 3071 3253 -19 218 330 142 9 chrX 63422526 63422632 -99177298 + L2 LINE L2 1789 1908 -1406 1095 233 52 62 chrX 63422637 63422942 -99176988 + MLT1K LTR MaLR 279 580 -8 573 335 174 5 chrX 63422946 63423331 -99176599 + L2 LINE L2 2223 2672 -642 258 206 41 0 chrX 63423514 63423587 -99176343 + (TA)n Simple_repeat Simple_repeat 1 76 0 454 292 64 57 chrX 63423775 63423920 -99176010 - L1MC/D LINE L1 -2002 5806 5657 2365 68 20 0 chrX 63423920 63424213 -99175717 - AluSx SINE Alu -13 299 1 454 292 64 57 chrX 63424213 63424348 -99175582 - L1MC/D LINE L1 -2151 5657 5524 1803 182 0 0 chrX 63424442 63424744 -99175186 - AluJo SINE Alu -8 304 3 22 0 0 0 chrX 63424746 63424768 -99175162 + AT_rich Low_complexity Low_complexity 1 22 0 348 259 132 17 chrX 63424890 63425064 -99174866 - L1MC/D LINE L1 -2037 5771 5578 747 336 67 50 chrX 63425086 63425610 -99174320 + L2 LINE L2 2743 3272 0 466 203 94 78 chrX 63426262 63426390 -99173540 - MIR3 SINE MIR -49 159 30 2073 117 3 0 chrX 63427780 63428082 -99171848 + AluSx SINE Alu 1 303 0 589 255 49 44 chrX 63428090 63428294 -99171636 - MIR SINE MIR -56 206 2 368 330 89 58 chrX 63428968 63429226 -99170704 - L3 LINE CR1 -1103 474 209 1219 117 0 0 chrX 63429236 63429399 -99170531 + AluSq SINE Alu 1 163 -150 1528 130 4 32 chrX 63429464 63429711 -99170219 - AluSg/x SINE Alu -1 311 72 2501 239 78 12 chrX 63430009 63430864 -99169066 + L2 LINE L2 2302 3220 -93 262 170 19 19 chrX 63430864 63430917 -99169013 - L2 LINE L2 -17 3296 3244 190 352 80 0 chrX 63432520 63432608 -99167322 - L2 LINE L2 -29 3284 3190 2043 103 55 10 chrX 63433006 63433297 -99166633 - AluSx SINE Alu -4 308 5 2380 77 13 10 chrX 63433867 63434179 -99165751 + AluSq SINE Alu 1 313 0 414 57 0 0 chrX 63434186 63434239 -99165691 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 698 223 199 0 chrX 63434630 63434836 -99165094 + MIR SINE MIR 16 262 0 23 0 0 0 chrX 63435100 63435123 -99164807 + AT_rich Low_complexity Low_complexity 1 23 0 311 85 68 68 chrX 63435171 63435230 -99164700 - MER116 DNA Mariner -17 63 5 2582 84 3 8 chrX 63435485 63435844 -99164086 + L1PA12 LINE L1 5802 6158 -10 371 308 65 43 chrX 63436095 63436374 -99163556 - L2 LINE L2 -182 3090 2806 2942 204 40 34 chrX 63436447 63437177 -99162753 - L1ME2 LINE L1 -1 6163 5430 2050 128 51 31 chrX 63437942 63438295 -99161635 + THE1B LTR MaLR 5 364 0 282 275 73 37 chrX 63438944 63439053 -99160877 + L2 LINE L2 3199 3311 -2 732 230 34 17 chrX 63439059 63439237 -99160693 - MLT1A1 LTR MaLR 0 365 185 27 0 0 0 chrX 63439312 63439339 -99160591 + AT_rich Low_complexity Low_complexity 1 27 0 7864 14 2 0 chrX 63439406 63440661 -99159269 - L1PA3 LINE L1 0 6155 4900 494 197 110 16 chrX 63440671 63440803 -99159127 - MSTC LTR MaLR -217 148 3 508 266 73 23 chrX 63440961 63441138 -99158792 - MER5A DNA MER1_type 0 189 4 24413 138 20 8 chrX 63445245 63449679 -99150251 + L1MA3 LINE L1 16 4567 -3072 1200 128 0 0 chrX 63449679 63449867 -99150063 + L1MA2 LINE L1 6117 6304 0 24413 138 20 8 chrX 63449867 63452226 -99147704 + L1MA3 LINE L1 4567 6896 -743 221 190 0 17 chrX 63453525 63453583 -99146347 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 220 120 40 0 chrX 63454465 63454515 -99145415 + (TA)n Simple_repeat Simple_repeat 2 53 0 5244 93 18 38 chrX 63455039 63455885 -99144045 + L1MA3 LINE L1 6896 7724 0 945 211 30 15 chrX 63456438 63456704 -99143226 + HAL1 LINE L1 1394 1663 -844 367 306 141 27 chrX 63456712 63456822 -99143108 + HAL1 LINE L1 1834 1930 -577 2174 90 14 3 chrX 63456822 63457111 -99142819 - AluSg SINE Alu -18 292 1 367 306 141 27 chrX 63457111 63457297 -99142633 + HAL1 LINE L1 1930 2164 -343 269 249 68 107 chrX 63457356 63457533 -99142397 + HAL1b LINE L1 746 915 -433 277 229 124 68 chrX 63457624 63457873 -99142057 + HAL1 LINE L1 2245 2507 0 270 239 104 15 chrX 63458145 63458279 -99141651 - L1MA9 LINE L1 0 6312 6167 * 3427 167 60 82 chrX 63458211 63458980 -99140950 - L1ME1 LINE L1 -77 6089 5340 667 231 23 0 chrX 63458980 63459110 -99140820 - FLAM_A SINE Alu 0 133 1 3427 167 60 82 chrX 63459110 63459251 -99140679 - L1ME1 LINE L1 -826 5340 5197 1257 186 59 18 chrX 63459259 63460136 -99139794 - L1ME1 LINE L1 -1254 4892 3847 237 324 102 67 chrX 63460336 63460561 -99139369 - L2 LINE L2 -20 3252 3020 432 0 0 0 chrX 63460756 63460804 -99139126 + (CA)n Simple_repeat Simple_repeat 1 48 0 228 371 30 15 chrX 63462260 63462392 -99137538 - L2 LINE L2 -206 3066 2933 369 250 194 0 chrX 63462426 63462534 -99137396 + MIR SINE MIR 130 258 -4 19934 104 8 12 chrX 63462756 63467363 -99132567 + L1PA8A LINE L1 1546 6126 -5 9474 141 103 72 chrX 63467974 63469540 -99130390 + L1MC3 LINE L1 5405 6920 -865 315 0 0 0 chrX 63469540 63469575 -99130355 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 9474 141 103 72 chrX 63469575 63469625 -99130305 + L1MC3 LINE L1 6920 6967 -818 300 256 11 11 chrX 63469625 63469715 -99130215 + MLT1F1 LTR MaLR 35 124 -443 9474 141 103 72 chrX 63469715 63470307 -99129623 + L1MC3 LINE L1 6967 7776 -9 28 48 0 0 chrX 63470307 63470349 -99129581 + AT_rich Low_complexity Low_complexity 1 42 0 407 333 0 0 chrX 63471297 63471432 -99128498 - L3b LINE CR1 -346 1237 1103 2257 121 0 0 chrX 63472064 63472369 -99127561 + AluSx SINE Alu 1 305 -7 26 30 0 0 chrX 63472741 63472774 -99127156 + AT_rich Low_complexity Low_complexity 1 33 0 2237 100 7 7 chrX 63473283 63473584 -99126346 + AluSx SINE Alu 1 301 -11 2605 52 0 10 chrX 63473814 63474124 -99125806 + AluY SINE Alu 1 307 -4 332 234 85 21 chrX 63474329 63474423 -99125507 - MIR SINE MIR -54 208 109 366 295 78 0 chrX 63474502 63474631 -99125299 - MIR3 SINE MIR -25 183 45 620 254 11 48 chrX 63474708 63474897 -99125033 + L2 LINE L2 3129 3310 -3 2216 75 35 0 chrX 63474914 63475196 -99124734 - AluSp SINE Alu -21 292 1 210 261 22 80 chrX 63475615 63475753 -99124177 + L3b LINE CR1 1102 1231 -352 1640 106 19 4 chrX 63475772 63476037 -99123893 + L1MA5A LINE L1 6029 6297 0 443 323 23 0 chrX 63476059 63476192 -99123738 + MIR SINE MIR 7 142 -120 13987 130 29 11 chrX 63476295 63477452 -99122478 + Tigger1 DNA MER2_type 28 1162 -1256 2188 142 3 0 chrX 63477452 63477761 -99122169 + AluSx SINE Alu 3 312 0 13987 130 29 11 chrX 63477761 63478951 -99120979 + Tigger1 DNA MER2_type 1162 2418 0 1990 238 80 61 chrX 63478952 63480089 -99119841 + L1ME LINE L1 71 1185 -4895 450 0 0 0 chrX 63480089 63480139 -99119791 + (CA)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chrX 63480138 63480161 -99119769 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 1990 238 80 61 chrX 63480139 63480207 -99119723 + L1ME LINE L1 1185 1259 -4821 794 186 0 0 chrX 63480221 63480345 -99119585 + FLAM_A SINE Alu 4 127 -6 219 174 87 0 chrX 63480413 63480459 -99119471 + MIR SINE MIR 212 261 -1 1875 130 11 18 chrX 63480913 63481236 -99118694 + AluSx SINE Alu 1 321 0 1066 281 83 23 chrX 63481490 63481888 -99118042 - L3 LINE CR1 0 1577 1156 758 357 107 31 chrX 63481971 63482590 -99117340 - L3 LINE CR1 -834 743 78 267 103 0 0 chrX 63483737 63483776 -99116154 + (TG)n Simple_repeat Simple_repeat 1 39 0 550 224 19 87 chrX 63484563 63484724 -99115206 - L2 LINE L2 -1 3312 3163 4506 120 7 55 chrX 63485341 63485861 -99114069 + L1MA4 LINE L1 5513 6056 -244 1900 176 3 0 chrX 63485861 63486156 -99113774 + AluJo SINE Alu 1 296 -16 4506 120 7 55 chrX 63486156 63486400 -99113530 + L1MA4 LINE L1 6056 6238 -62 1988 100 38 7 chrX 63486400 63486689 -99113241 + AluSq SINE Alu 1 298 -15 4506 120 7 55 chrX 63486689 63486741 -99113189 + L1MA4 LINE L1 6238 6291 -9 58 28 0 0 chrX 63486746 63486818 -99113112 + AT_rich Low_complexity Low_complexity 1 72 0 306 50 0 0 chrX 63486891 63486931 -99112999 + (TG)n Simple_repeat Simple_repeat 1 40 0 249 222 0 0 chrX 63487215 63487260 -99112670 + MIR3 SINE MIR 143 187 -21 294 300 146 0 chrX 63488503 63488613 -99111317 - L2 LINE L2 -9 3263 3138 244 279 0 0 chrX 63489955 63490016 -99109914 - MIR SINE MIR -37 225 165 211 136 15 45 chrX 63490028 63490094 -99109836 + (TA)n Simple_repeat Simple_repeat 1 64 0 446 252 75 0 chrX 63490197 63490304 -99109626 - MIR SINE MIR -130 132 18 950 220 40 14 chrX 63490372 63490595 -99109335 - MIR SINE MIR 0 262 34 294 344 92 11 chrX 63490635 63490824 -99109106 + MIR SINE MIR 16 221 -41 243 61 0 0 chrX 63490952 63490985 -99108945 + (CA)n Simple_repeat Simple_repeat 2 34 0 2052 109 0 33 chrX 63491919 63492221 -99107709 - AluSx SINE Alu -20 292 1 692 309 5 25 chrX 63493754 63493955 -99105975 + MIR3 SINE MIR 2 198 -10 288 0 0 0 chrX 63494079 63494111 -99105819 + (CA)n Simple_repeat Simple_repeat 2 33 0 1507 111 12 189 chrX 63494198 63494611 -99105319 + MLT1B LTR MaLR 51 390 0 324 0 0 0 chrX 63495098 63495134 -99104796 + (TG)n Simple_repeat Simple_repeat 2 37 0 5921 177 10 8 chrX 63495261 63496467 -99103463 + L1P LINE L1 3792 4999 -1147 649 276 0 7 chrX 63496578 63496730 -99103200 - MIR3 SINE MIR -5 203 53 416 315 28 21 chrX 63496965 63497108 -99102822 + MIR SINE MIR 2 146 -62 1665 186 52 48 chrX 63497109 63497572 -99102358 + MLT1C LTR MaLR 1 465 -2 516 218 121 29 chrX 63497742 63497916 -99102014 - Charlie8 DNA MER1_type -2195 222 33 6430 78 17 23 chrX 63498592 63500424 -99099506 - L1PA11 LINE L1 0 6174 4370 2325 187 40 26 chrX 63500460 63501080 -99098850 + L1M3 LINE L1 4867 5476 -707 1850 159 3 10 chrX 63501080 63501408 -99098522 + AluJb SINE Alu 1 312 0 2325 187 40 26 chrX 63501408 63501508 -99098422 + L1M3 LINE L1 5476 5573 -610 333 0 0 0 chrX 63501508 63501545 -99098385 + (TA)n Simple_repeat Simple_repeat 1 37 0 2325 187 40 26 chrX 63501545 63501758 -99098172 + L1M3 LINE L1 5573 5814 -369 * 2489 230 67 32 chrX 63501756 63503032 -99096898 - L1 LINE L1 -3693 2341 1011 533 210 105 6 chrX 63503026 63503188 -99096742 - L1 LINE L1 -4743 1222 1045 * 1244 170 37 5 chrX 63503188 63503406 -99096524 - AluJb SINE Alu -1 311 87 2024 281 42 12 chrX 63503408 63504126 -99095804 - L1 LINE L1 -4915 1040 302 309 316 27 14 chrX 63504105 63504337 -99095593 - L1M3a LINE L1 -5172 783 359 * 1454 301 18 11 chrX 63504529 63504977 -99094953 - L1M3a LINE L1 -5503 452 2 2297 115 27 0 chrX 63504981 63505347 -99094583 + L1MB3 LINE L1 5804 6179 -4 3428 167 18 11 chrX 63505348 63506007 -99093923 + L1MB5 LINE L1 5300 5963 -211 1015 141 30 15 chrX 63506036 63506235 -99093695 - L1MB8 LINE L1 -15 6163 5962 1427 149 153 27 chrX 63506447 63506709 -99093221 - AluJb SINE Alu -7 295 1 2380 63 3 20 chrX 63507516 63507816 -99092114 + AluSp SINE Alu 1 295 -18 2575 168 19 0 chrX 63508459 63508877 -99091053 + MSTB LTR MaLR 1 426 0 306 0 0 0 chrX 63511775 63511809 -99088121 + (TG)n Simple_repeat Simple_repeat 2 35 0 2317 225 60 24 chrX 63512454 63513214 -99086716 + L1ME1 LINE L1 4745 5578 -588 1432 169 81 18 chrX 63513214 63513486 -99086444 - AluJo SINE Alu -23 289 1 2317 225 60 24 chrX 63513486 63514048 -99085882 + L1ME1 LINE L1 5578 6119 -47 272 81 47 47 chrX 63514056 63514142 -99085788 + T-rich Low_complexity Low_complexity 5 90 0 612 130 0 0 chrX 63514144 63514236 -99085694 - L1PB1 LINE L1 -52 6815 6724 13319 210 32 9 chrX 63514241 63516184 -99083746 - L1PB1 LINE L1 -360 6507 4610 2399 99 0 3 chrX 63516184 63516497 -99083433 - AluSp SINE Alu 0 313 2 13319 210 32 9 chrX 63516497 63518798 -99081132 - L1PB1 LINE L1 -2257 4610 2180 2864 104 32 23 chrX 63518799 63519239 -99080691 + MLT2A1 LTR ERVL 1 444 0 43005 63 12 1 chrX 63519239 63524835 -99075095 + HERVL-A1 LTR ERVL 1 5654 0 2818 89 51 16 chrX 63524835 63525192 -99074738 + MLT2A1 LTR ERVL 1 377 -67 216 97 0 0 chrX 63525192 63525223 -99074707 + (TA)n Simple_repeat Simple_repeat 1 31 0 2818 89 51 16 chrX 63525223 63525294 -99074636 + MLT2A1 LTR ERVL 377 444 0 4836 88 21 14 chrX 63525294 63525527 -99074403 - L1PB1 LINE L1 -4753 2110 1880 2182 113 7 0 chrX 63525527 63525818 -99074112 - AluSx SINE Alu -19 293 1 4836 88 21 14 chrX 63525818 63526355 -99073575 - L1PB1 LINE L1 -4983 1880 1335 24 0 0 0 chrX 63526368 63526392 -99073538 + AT_rich Low_complexity Low_complexity 1 24 0 506 198 24 24 chrX 63526764 63526931 -99072999 + (CATA)n Simple_repeat Simple_repeat 2 168 0 383 267 0 0 chrX 63526934 63527024 -99072906 - L1MC4 LINE L1 -1339 6703 6614 712 264 14 40 chrX 63527042 63527319 -99072611 - HAL1 LINE L1 -1554 953 684 2403 180 99 41 chrX 63527763 63527787 -99072143 + MLT1F1 LTR MaLR 2 23 -544 1637 174 10 7 chrX 63527787 63528075 -99071855 + AluJo SINE Alu 1 289 -23 2403 180 99 41 chrX 63528075 63528584 -99071346 + MLT1F1 LTR MaLR 23 566 -1 373 297 119 7 chrX 63528768 63529169 -99070761 - L1MEd LINE L1 -3775 2354 1948 378 279 131 40 chrX 63529314 63529536 -99070394 - L1MEd LINE L1 -4573 1737 1496 626 185 67 0 chrX 63529540 63529659 -99070271 + L1PB1 LINE L1 2 128 -6659 16403 162 7 83 chrX 63529660 63534230 -99065700 + L1PB1 LINE L1 2158 6369 -433 378 0 0 0 chrX 63534230 63534272 -99065658 + (CA)n Simple_repeat Simple_repeat 2 43 0 2718 78 6 0 chrX 63534272 63534629 -99065301 + L1PB1 LINE L1 6444 6802 0 5827 90 20 30 chrX 63534657 63536046 -99063884 + L1PA13 LINE L1 4600 5970 -193 2013 119 0 0 chrX 63536046 63536337 -99063593 + AluSx SINE Alu 14 304 0 5827 90 20 30 chrX 63536337 63536516 -99063414 + L1PA13 LINE L1 5970 6149 -14 813 241 65 0 chrX 63536549 63536658 -99063272 + MER58C DNA MER1_type 4 104 -2316 212 0 36 0 chrX 63536658 63536686 -99063244 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 813 241 65 0 chrX 63536686 63536775 -99063155 + MER58C DNA MER1_type 104 215 0 1602 287 72 51 chrX 63536788 63538125 -99061805 - L1MEd LINE L1 -4831 1479 90 1984 89 4 0 chrX 63538132 63538380 -99061550 + AluSp SINE Alu 35 283 -30 650 196 89 45 chrX 63538584 63538763 -99061167 - MER5A DNA MER1_type -2 187 1 306 73 0 0 chrX 63539332 63539373 -99060557 + (CA)n Simple_repeat Simple_repeat 2 42 0 292 167 78 0 chrX 63539382 63539472 -99060458 + MER69 DNA AcHobo 2334 2430 -96 434 371 150 22 chrX 63539626 63540127 -99059803 - L2 LINE L2 -281 2991 2430 420 20 0 0 chrX 63541391 63541440 -99058490 + (TG)n Simple_repeat Simple_repeat 2 50 0 499 339 16 16 chrX 63541689 63541878 -99058052 - MER5A DNA MER1_type 0 189 1 2471 190 60 75 chrX 63542401 63543220 -99056710 + L1MD2 LINE L1 5375 6165 -1 2273 113 0 0 chrX 63543926 63544237 -99055693 + AluSx SINE Alu 1 311 -1 2251 182 69 40 chrX 63544407 63544912 -99055018 - MLT1F1 LTR MaLR 0 567 23 2539 44 3 0 chrX 63546481 63546779 -99053151 - AluY SINE Alu -12 299 1 193 256 120 55 chrX 63546849 63546981 -99052949 - MIR SINE MIR -52 156 20 331 278 60 0 chrX 63547140 63547273 -99052657 + L1MA9 LINE L1 6135 6275 -37 23 33 0 0 chrX 63547281 63547311 -99052619 + AT_rich Low_complexity Low_complexity 1 30 0 2880 109 14 7 chrX 63547472 63547894 -99052036 - MSTA LTR MaLR -3 425 1 3755 105 15 9 chrX 63547990 63548514 -99051416 - MER1A DNA MER1_type 0 527 1 273 360 44 44 chrX 63548600 63548828 -99051102 - L3b LINE CR1 -54 1529 1302 1102 187 5 55 chrX 63548870 63549089 -99050841 + AluJo SINE Alu 3 210 -102 1345 179 25 103 chrX 63549480 63549876 -99050054 + MLT1A1 LTR MaLR 1 365 0 856 292 100 43 chrX 63550037 63550552 -99049378 - L2 LINE L2 0 3272 2720 2494 75 0 0 chrX 63551865 63552173 -99047757 - AluY SINE Alu -3 308 1 662 116 0 27 chrX 63553368 63553480 -99046450 + L1MA3 LINE L1 6197 6305 0 28 29 0 0 chrX 63553485 63553520 -99046410 + AT_rich Low_complexity Low_complexity 1 35 0 16749 112 18 17 chrX 63553652 63556367 -99043563 + L1PA6 LINE L1 11 2730 -3416 2675 53 0 6 chrX 63556379 63556716 -99043214 + L1PA5 LINE L1 5820 6154 0 * 15326 56 33 1 chrX 63556711 63559452 -99040478 + L1PA6 LINE L1 3389 6154 0 395 227 121 21 chrX 63559462 63559603 -99040327 + MER103 DNA DNA 11 165 -1 886 280 51 51 chrX 63561264 63561635 -99038295 - L2 LINE L2 -1 3312 2942 40581 38 21 1 chrX 63561788 63567820 -99032110 + L1PA3 LINE L1 1 6155 0 262 308 13 0 chrX 63567935 63568013 -99031917 - L3 LINE CR1 -189 1388 1310 1712 179 0 32 chrX 63568208 63568516 -99031414 - AluJo SINE Alu -14 298 1 674 189 14 0 chrX 63568569 63568717 -99031213 + L1MB3 LINE L1 6034 6183 0 22160 173 14 21 chrX 63569095 63575963 -99023967 - L1PA11 LINE L1 -1 7611 9 561 331 71 71 chrX 63576879 63577299 -99022631 - L2 LINE L2 -10 3262 2843 273 338 19 65 chrX 63577317 63577533 -99022397 - L2 LINE L2 -1949 1365 1160 375 351 30 30 chrX 63577841 63578006 -99021924 + L2 LINE L2 3078 3242 -30 232 286 71 0 chrX 63578024 63578094 -99021836 - MIR SINE MIR -68 140 66 1535 204 29 24 chrX 63578487 63578904 -99021026 + LTR52 LTR ERVL 1 419 -2 4523 174 30 41 chrX 63578905 63579738 -99020192 + LTR52-int LTR ERVL 1 823 -2733 2419 92 3 0 chrX 63579738 63580042 -99019888 - AluSq SINE Alu -8 305 1 4523 174 30 41 chrX 63580042 63580210 -99019720 + LTR52-int LTR ERVL 823 991 -2565 2536 75 7 0 chrX 63580229 63580537 -99019393 - AluSg SINE Alu 0 310 1 3098 213 40 78 chrX 63580596 63580996 -99018934 + LTR52-int LTR ERVL 1026 1440 -2116 1181 147 147 69 chrX 63580996 63581344 -99018586 + THE1C LTR MaLR 1 375 0 3098 213 40 78 chrX 63581344 63581917 -99018013 + LTR52-int LTR ERVL 1440 1962 -1594 825 259 147 38 chrX 63581922 63582269 -99017661 + MER77 LTR ERV1 127 511 -94 517 303 82 6 chrX 63582511 63582684 -99017246 - MIR SINE MIR -62 146 8 269 266 38 13 chrX 63582790 63582869 -99017061 + MIR3 SINE MIR 116 196 -12 752 321 43 66 chrX 63583502 63584069 -99015861 + L2 LINE L2 2714 3268 -4 479 318 114 1 chrX 63584344 63584571 -99015359 + MIR SINE MIR 3 250 -12 196 256 219 12 chrX 63585144 63585226 -99014704 - L2 LINE L2 0 3313 3215 371 258 94 39 chrX 63585442 63585570 -99014360 + MIR3 SINE MIR 6 140 -68 728 343 69 11 chrX 63585759 63586121 -99013809 - L3b LINE CR1 -8 1575 1193 4140 110 15 5 chrX 63586259 63586922 -99013008 + L1MA5A LINE L1 5559 6228 -69 308 51 0 0 chrX 63586931 63586970 -99012960 + HSMAR1 DNA Mariner 11 49 -1238 298 225 141 0 chrX 63587848 63587919 -99012011 - MIR SINE MIR -98 110 30 215 191 16 16 chrX 63588128 63588191 -99011739 + (TA)n Simple_repeat Simple_repeat 1 63 0 1302 262 62 25 chrX 63588214 63589008 -99010922 - L1ME3A LINE L1 -230 5940 5129 1582 175 48 0 chrX 63589060 63589329 -99010601 + AluJo SINE Alu 12 293 -19 5776 136 21 34 chrX 63589994 63591675 -99008255 - L1MA4A LINE L1 -13 6992 5335 10262 183 39 27 chrX 63591675 63594858 -99005072 - L1MA4A LINE L1 -2942 3906 683 240 261 108 25 chrX 63594997 63595154 -99004776 + L1ME LINE L1 5567 5736 -385 1638 156 19 36 chrX 63595199 63595507 -99004423 + AluJo SINE Alu 9 311 -1 829 298 133 10 chrX 63595544 63595943 -99003987 + L2 LINE L2 2258 2705 -609 660 246 15 0 chrX 63595953 63596148 -99003782 + L1MD3 LINE L1 7790 7987 -8 183 352 143 51 chrX 63596169 63596457 -99003473 + L2 LINE L2 2715 3028 -244 198 176 0 0 chrX 63596467 63596501 -99003429 + L2 LINE L2 3239 3272 0 362 188 58 0 chrX 63596840 63596909 -99003021 + MER68 LTR ERV1 1 73 -489 222 116 0 0 chrX 63596927 63596970 -99002960 + (A)n Simple_repeat Simple_repeat 1 43 0 718 249 48 31 chrX 63596978 63597207 -99002723 + MLT1L LTR MaLR 381 613 -2 6090 95 3 13 chrX 63597366 63598551 -99001379 + L1PB2 LINE L1 4970 6149 -2 2203 115 0 0 chrX 63598576 63598871 -99001059 + AluSg SINE Alu 2 296 -14 657 291 72 8 chrX 63599014 63599251 -99000679 + MIR SINE MIR 11 262 0 340 183 0 67 chrX 63599352 63599456 -99000474 + L1MC5 LINE L1 7817 7913 -48 626 26 0 0 chrX 63600217 63600294 -98999636 + L1PA4 LINE L1 6071 6147 -8 40796 35 22 2 chrX 63601198 63607230 -98992700 + L1PA3 LINE L1 2 6155 0 234 0 0 0 chrX 63608124 63608150 -98991780 + (T)n Simple_repeat Simple_repeat 1 26 0 1082 178 0 48 chrX 63608940 63609101 -98990829 - MER58A DNA MER1_type -2203 217 67 3367 165 26 24 chrX 63609101 63609597 -98990333 + L1MB8 LINE L1 5482 5981 -197 2151 131 128 10 chrX 63609597 63609980 -98989950 - MSTA LTR MaLR 0 428 1 3367 165 26 24 chrX 63609980 63610179 -98989751 + L1MB8 LINE L1 5981 6178 0 1082 178 0 48 chrX 63610179 63610225 -98989705 - MER58A DNA MER1_type -2353 67 20 203 167 0 0 chrX 63610408 63610444 -98989486 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 3637 157 7 55 chrX 63610782 63611496 -98988434 - L1MB5 LINE L1 -9 6165 5486 791 207 24 30 chrX 63611496 63611665 -98988265 + MER58B DNA MER1_type 174 341 0 315 0 0 0 chrX 63613337 63613372 -98986558 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2386 112 28 6 chrX 63613887 63614243 -98985687 - THE1B LTR MaLR 0 364 1 311 70 0 0 chrX 63614390 63614433 -98985497 + L1P LINE L1 5149 5191 -955 257 318 15 0 chrX 63614629 63614761 -98985169 + Charlie1 DNA MER1_type 2330 2463 -298 2591 264 19 13 chrX 63615952 63616626 -98983304 + L1MD1 LINE L1 109 786 -5610 * 4052 165 52 71 chrX 63616615 63617614 -98982316 + L1MB4 LINE L1 5151 6119 -61 2471 133 29 0 chrX 63617614 63618026 -98981904 + L1PA16 LINE L1 5734 6157 -9 4052 165 52 71 chrX 63618026 63618086 -98981844 + L1MB4 LINE L1 6119 6179 -1 818 199 40 78 chrX 63618074 63618257 -98981673 + L1MD1 LINE L1 3804 3971 -2244 * 1831 144 17 27 chrX 63618257 63618549 -98981381 + AluJb SINE Alu 1 289 -23 818 199 40 78 chrX 63618549 63618686 -98981244 + L1MD1 LINE L1 3971 4112 -2103 301 277 0 0 chrX 63618731 63618825 -98981105 + L1MD1 LINE L1 4844 4937 -1278 * 1435 208 62 6 chrX 63618818 63619159 -98980771 - L1MB7 LINE L1 -8 6176 5817 2100 92 0 11 chrX 63619159 63619473 -98980457 + AluSc SINE Alu 1 311 0 3436 186 56 10 chrX 63619490 63620583 -98979347 + L1MD1 LINE L1 4919 6055 -256 462 268 8 0 chrX 63620655 63620782 -98979148 + L1ME1 LINE L1 1676 1803 -4593 1430 207 31 16 chrX 63620807 63621188 -98978742 + L1ME1 LINE L1 2051 2437 -3959 2166 216 56 10 chrX 63621190 63621779 -98978151 + L1ME1 LINE L1 2562 3177 -3038 2969 226 54 22 chrX 63621791 63623292 -98976638 + L1ME1 LINE L1 4687 6231 -4 679 187 26 39 chrX 63623389 63623544 -98976386 + L1MDa LINE L1 282 434 -6106 4670 103 9 13 chrX 63623547 63624234 -98975696 + L1PA13 LINE L1 5478 6161 -2 518 209 8 15 chrX 63624252 63624386 -98975544 + L1MDa LINE L1 1295 1427 -5113 1773 192 25 103 chrX 63624388 63624914 -98975016 + L1MD1 LINE L1 5757 6241 -1 306 179 18 0 chrX 63625236 63625292 -98974638 + L2 LINE L2 3257 3313 0 2287 119 0 0 chrX 63625974 63626285 -98973645 + AluSx SINE Alu 1 311 -1 314 284 121 9 chrX 63629030 63629146 -98970784 + MIR SINE MIR 122 250 -12 198 0 0 0 chrX 63630297 63630319 -98969611 + (T)n Simple_repeat Simple_repeat 1 22 0 180 214 125 0 chrX 63630870 63630926 -98969004 + L2 LINE L2 3179 3241 -72 2273 99 0 7 chrX 63631661 63631965 -98967965 - AluSq SINE Alu -11 302 1 331 331 84 12 chrX 63633824 63633990 -98965940 + L3b LINE CR1 1352 1529 -54 40059 67 11 10 chrX 63634330 63640338 -98959592 + L1PA5 LINE L1 2 6016 -138 189 0 0 0 chrX 63640338 63640359 -98959571 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 40059 67 11 10 chrX 63640359 63640497 -98959433 + L1PA5 LINE L1 6016 6152 -2 249 33 0 0 chrX 63640567 63640597 -98959333 + (A)n Simple_repeat Simple_repeat 1 30 0 5530 10 0 0 chrX 63640956 63641576 -98958354 + L1PA2 LINE L1 5533 6152 -3 942 240 64 9 chrX 63641649 63641882 -98958048 - MIR SINE MIR -13 249 4 1195 304 89 23 chrX 63642702 63643496 -98956434 + L2 LINE L2 2419 3262 -51 210 267 0 0 chrX 63644330 63644420 -98955510 + GA-rich Low_complexity Low_complexity 1 90 0 256 224 15 30 chrX 63644435 63644502 -98955428 + GA-rich Low_complexity Low_complexity 1 66 0 2069 139 3 0 chrX 63644508 63644811 -98955119 - AluSx SINE Alu -8 304 1 296 287 145 17 chrX 63645569 63645759 -98954171 + MIR SINE MIR 3 212 -50 550 296 42 52 chrX 63646113 63646326 -98953604 + MIR SINE MIR 23 233 -29 186 301 233 0 chrX 63646973 63647076 -98952854 + MIR3 SINE MIR 76 202 -6 252 86 0 0 chrX 63647240 63647275 -98952655 + (TAG)n Simple_repeat Simple_repeat 2 36 0 454 291 126 19 chrX 63647303 63647509 -98952421 - MIR SINE MIR 0 262 35 735 265 43 9 chrX 63647561 63647791 -98952139 + L1MEc LINE L1 255 492 -6115 6423 231 37 62 chrX 63647882 63650479 -98949451 + L1M4b LINE L1 11 2723 -4415 303 240 66 91 chrX 63650480 63650722 -98949208 + L1MEc LINE L1 1849 2124 -4342 4475 223 35 6 chrX 63650725 63652156 -98947774 + L1MEc LINE L1 2103 3578 -2848 3056 263 109 8 chrX 63652151 63653415 -98946515 + L1MEc LINE L1 1216 2607 -4000 * 2233 104 3 3 chrX 63653445 63653742 -98946188 + AluSx SINE Alu 1 297 -15 425 225 28 35 chrX 63653744 63653886 -98946044 + L1MEc LINE L1 24 164 -5906 1937 144 33 0 chrX 63653888 63654187 -98945743 + AluSx SINE Alu 1 309 -3 2306 83 7 0 chrX 63654202 63654492 -98945438 - AluSp SINE Alu -21 292 1 576 292 71 38 chrX 63654750 63654990 -98944940 + L1MEc LINE L1 243 490 -5580 711 195 6 32 chrX 63655059 63655232 -98944698 - L1MB2 LINE L1 -258 5913 5753 2142 138 0 31 chrX 63655338 63655693 -98944237 - L1M3 LINE L1 -378 5793 5450 2707 234 66 36 chrX 63655701 63656655 -98943275 + L1MEc LINE L1 2692 3755 -2325 7998 48 1 1 chrX 63656655 63658416 -98941514 + L1PA5 LINE L1 4394 6153 -1 2707 234 66 36 chrX 63658416 63658723 -98941207 + L1MEc LINE L1 3755 4051 -2029 1021 271 99 22 chrX 63658721 63658785 -98941145 + L1M4 LINE L1 2978 3036 -3110 * 2261 100 3 3 chrX 63658785 63659085 -98940845 + AluSx SINE Alu 11 310 -2 1021 271 99 22 chrX 63659085 63659574 -98940356 + L1M4 LINE L1 3036 3574 -2572 392 218 150 30 chrX 63660221 63660354 -98939576 - L2 LINE L2 0 3313 3165 850 158 0 15 chrX 63660358 63660491 -98939439 + AluJo SINE Alu 6 136 -176 1318 258 147 21 chrX 63660493 63661139 -98938791 - L2 LINE L2 -136 3177 2470 999 282 64 7 chrX 63661139 63661437 -98938493 - L2 LINE L2 -1693 1621 1307 434 355 190 14 chrX 63661736 63662259 -98937671 + L2 LINE L2 2553 3206 -66 2235 105 3 0 chrX 63662259 63662554 -98937376 - AluSx SINE Alu -16 296 1 434 355 190 14 chrX 63662554 63662629 -98937301 + L2 LINE L2 3206 3266 -6 1121 137 10 25 chrX 63662870 63663074 -98936856 + MLT1A1 LTR MaLR 24 224 -141 2253 175 148 37 chrX 63663082 63663795 -98936135 + LTR1B LTR ERV1 1 785 0 702 188 0 8 chrX 63663795 63663928 -98936002 + MLT1A1 LTR MaLR 239 370 -4 327 332 29 39 chrX 63664572 63664780 -98935150 - L1MEc LINE L1 -6155 241 36 300 313 172 16 chrX 63664835 63664963 -98934967 - L2 LINE L2 0 3272 3125 679 286 32 60 chrX 63667556 63667808 -98932122 - MIR SINE MIR -1 261 17 2118 83 0 4 chrX 63668046 63668323 -98931607 + AluY SINE Alu 36 311 0 183 297 125 55 chrX 63668485 63668613 -98931317 + L3 LINE CR1 134 270 -1307 5765 204 46 43 chrX 63668613 63670338 -98929592 + L1MD2 LINE L1 1 1739 -4667 3131 108 9 9 chrX 63670379 63670469 -98929461 + L1PB3 LINE L1 5693 5782 -372 2228 120 0 0 chrX 63670469 63670769 -98929161 + AluSg SINE Alu 1 300 -10 252 0 0 0 chrX 63670773 63670801 -98929129 + (TG)n Simple_repeat Simple_repeat 2 29 0 3131 108 9 9 chrX 63670801 63671160 -98928770 + L1PB3 LINE L1 5784 6147 -7 6635 197 51 42 chrX 63671242 63672235 -98927695 + L1MD2 LINE L1 3431 4413 -2206 225 0 0 0 chrX 63672235 63672260 -98927670 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 6635 197 51 42 chrX 63672260 63672350 -98927580 + L1MD2 LINE L1 4413 4501 -2118 2018 119 131 50 chrX 63672350 63672698 -98927232 - MSTA LTR MaLR 0 428 43 2424 91 0 0 chrX 63672698 63672996 -98926934 + AluY SINE Alu 1 298 -13 2018 119 131 50 chrX 63672996 63673043 -98926887 - MSTA LTR MaLR -385 43 1 6635 197 51 42 chrX 63673043 63673239 -98926691 + L1MD2 LINE L1 4501 4694 -1925 7805 157 27 6 chrX 63673239 63675431 -98924499 + L1PA13 LINE L1 3942 6159 -4 6635 197 51 42 chrX 63675431 63677294 -98922636 + L1MD2 LINE L1 4694 6591 -28 6812 25 1 2 chrX 63677306 63678144 -98921786 - L1PA4 LINE L1 -15 6140 5304 229 256 11 11 chrX 63678150 63678240 -98921690 + L1M4 LINE L1 4302 4391 -1755 19072 30 2 1 chrX 63678249 63680672 -98919258 + L1P LINE L1 2879 5305 -841 511 252 84 0 chrX 63680725 63680844 -98919086 + FLAM_A SINE Alu 3 131 -2 501 344 117 42 chrX 63680850 63681391 -98918539 + L3 LINE CR1 285 865 -712 643 306 77 19 chrX 63681459 63681770 -98918160 + L2 LINE L2 2863 3191 -122 762 244 12 0 chrX 63681824 63681992 -98917938 - MER69A DNA AcHobo -6 171 2 981 188 141 32 chrX 63682043 63682406 -98917524 + MER57A LTR ERV1 41 403 0 621 167 15 15 chrX 63683306 63683438 -98916492 + MER57A-int LTR ERV1 298 429 -4507 2866 109 74 37 chrX 63683526 63684117 -98915813 + MER4B LTR ERV1 1 779 0 325 232 0 0 chrX 63684234 63684303 -98915627 + MER57A-int LTR ERV1 1235 1303 -3568 1063 232 22 15 chrX 63684392 63684659 -98915271 + MER34C LTR ERV1 159 427 -158 1023 204 70 18 chrX 63684719 63685003 -98914927 + LTR23-int LTR ERV1 4166 4464 -2294 237 250 256 33 chrX 63685073 63685253 -98914677 - LTR48B LTR ERV1 -304 340 121 2401 92 3 9 chrX 63685263 63685578 -98914352 - AluSq SINE Alu 0 313 1 317 155 10 144 chrX 63685583 63685680 -98914250 - MER34 LTR ERV1 -458 84 1 408 214 32 32 chrX 63685682 63685836 -98914094 + LTR23-int LTR ERV1 1743 1896 -3227 323 119 0 34 chrX 63685836 63685895 -98914035 - MER44D DNA MER2_type 0 605 549 2463 100 61 90 chrX 63685919 63686502 -98913428 + MER4E LTR ERV1 46 777 -2 1009 142 33 0 chrX 63686502 63686684 -98913246 - MER44D DNA MER2_type -50 559 372 2563 108 34 5 chrX 63686686 63687073 -98912857 + MER48 LTR ERV1 1 398 0 29352 67 14 2 chrX 63687073 63691153 -98908777 + HERVH48 LTR ERV1 1 4128 -2526 14685 58 14 5 chrX 63691135 63693094 -98906836 + HERVH48 LTR ERV1 4679 6654 0 * 2519 124 31 5 chrX 63693094 63693482 -98906448 + MER48 LTR ERV1 1 398 0 499 174 0 12 chrX 63693483 63693569 -98906361 - MER44D DNA MER2_type -226 383 29 571 228 73 79 chrX 63693581 63694264 -98905666 + MER57-int LTR ERV1 1552 2539 -2495 2308 105 3 0 chrX 63694264 63694559 -98905371 - AluSq SINE Alu -17 296 1 571 228 73 79 chrX 63694559 63694591 -98905339 + MER57-int LTR ERV1 2539 2570 -2464 * 3150 207 76 102 chrX 63694581 63694710 -98905220 + MER57-int LTR ERV1 2089 2220 -5102 2113 105 33 23 chrX 63694710 63695016 -98904914 + AluSg SINE Alu 1 309 -1 3150 207 76 102 chrX 63695016 63695231 -98904699 + MER57-int LTR ERV1 2220 2439 -4883 1783 141 0 0 chrX 63695231 63695479 -98904451 - AluSx SINE Alu -64 248 1 3150 207 76 102 chrX 63695479 63696902 -98903028 + MER57-int LTR ERV1 2439 5821 -1501 397 164 0 0 chrX 63697287 63697354 -98902576 + MER57A LTR ERV1 313 379 -24 910 191 96 10 chrX 63697362 63697561 -98902369 - U3 snRNA snRNA -1 216 1 258 159 0 0 chrX 63697585 63697629 -98902301 + L2 LINE L2 3269 3312 -1 375 315 108 7 chrX 63697848 63698026 -98901904 - MIR SINE MIR -25 237 40 21 0 0 0 chrX 63698618 63698639 -98901291 + AT_rich Low_complexity Low_complexity 1 21 0 499 290 32 48 chrX 63699187 63699373 -98900557 - MIR SINE MIR -7 255 73 5539 192 50 84 chrX 63699445 63700882 -98899048 + L1M4 LINE L1 3205 4690 -1456 1641 62 9 40 chrX 63700882 63701107 -98898823 + AluSq SINE Alu 1 218 -95 896 81 0 16 chrX 63701108 63701214 -98898716 + AluSg/x SINE Alu 188 293 -19 694 12 0 0 chrX 63701214 63701298 -98898632 + L1PA3 LINE L1 6071 6154 -1 896 81 0 16 chrX 63701298 63701314 -98898616 + AluSg/x SINE Alu 293 308 -4 5539 192 50 84 chrX 63701314 63701600 -98898330 + L1M4 LINE L1 4689 4988 -1158 2101 153 0 0 chrX 63701816 63702116 -98897814 + AluSx SINE Alu 1 300 -12 515 218 153 0 chrX 63702507 63702677 -98897253 + LTR16A LTR ERVL 249 444 -6 23 0 0 0 chrX 63702768 63702791 -98897139 + AT_rich Low_complexity Low_complexity 1 23 0 782 162 0 0 chrX 63702791 63702945 -98896985 + L1M4 LINE L1 4992 5145 -1001 765 177 19 0 chrX 63702960 63703118 -98896812 + L1MB7 LINE L1 4405 4565 -1581 4428 153 47 14 chrX 63703144 63704099 -98895831 + L1MB7 LINE L1 5195 6180 -4 636 179 29 104 chrX 63704099 63704220 -98895710 + Charlie1 DNA MER1_type 1450 1579 -1182 2078 98 44 0 chrX 63704220 63704495 -98895435 + AluSq SINE Alu 1 287 -26 207 0 0 0 chrX 63704498 63704521 -98895409 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 636 179 29 104 chrX 63704521 63704568 -98895362 + Charlie1 DNA MER1_type 1581 1609 -1152 231 93 93 0 chrX 63704585 63704639 -98895291 + Charlie1 DNA MER1_type 2562 2620 -141 375 305 55 23 chrX 63706773 63706901 -98893029 - L2 LINE L2 0 3272 3141 627 184 0 95 chrX 63707155 63707302 -98892628 - L2 LINE L2 -5 3308 3176 731 251 73 32 chrX 63707324 63707571 -98892359 - MIR SINE MIR 0 262 6 34493 33 12 1 chrX 63707668 63713687 -98886243 + L1PA3 LINE L1 1 6153 -2 197 383 26 26 chrX 63713687 63713802 -98886128 - L2 LINE L2 -458 2856 2742 294 164 0 0 chrX 63713977 63714032 -98885898 + (CA)n Simple_repeat Simple_repeat 2 56 0 2200 233 52 22 chrX 63714036 63714909 -98885021 + L2 LINE L2 2418 3313 0 337 321 230 17 chrX 63714972 63715238 -98884692 - L2 LINE L2 -808 2506 2298 1425 203 37 27 chrX 63715238 63715534 -98884396 + AluJo SINE Alu 3 301 -11 337 321 230 17 chrX 63715534 63715871 -98884059 - L2 LINE L2 -1016 2298 1774 421 300 30 68 chrX 63715878 63716115 -98883815 + L1MC4a LINE L1 5602 5829 -1979 337 303 64 9 chrX 63716171 63716280 -98883650 - L2 LINE L2 0 3313 3199 405 0 0 0 chrX 63716369 63716414 -98883516 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 775 330 43 63 chrX 63717019 63717620 -98882310 + L2 LINE L2 714 1325 -1989 2417 61 0 3 chrX 63717620 63717917 -98882013 - AluY SINE Alu -15 296 1 1036 41 0 0 chrX 63717917 63718038 -98881892 - 5S rRNA rRNA 0 121 1 775 330 43 63 chrX 63718038 63718150 -98881780 + L2 LINE L2 1323 1414 -1900 241 328 90 25 chrX 63718451 63718573 -98881357 - L2 LINE L2 0 3272 3143 993 214 0 32 chrX 63718652 63718904 -98881026 + L1MA9 LINE L1 2 245 -6923 12650 216 26 25 chrX 63718917 63720614 -98879316 + L1MA9 LINE L1 1376 3071 -4262 1304 155 25 4 chrX 63720614 63720853 -98879077 + L1PA16 LINE L1 5921 6164 -2 12650 216 26 25 chrX 63720853 63721652 -98878278 + L1MA9 LINE L1 3071 3868 -3465 2005 125 29 0 chrX 63721652 63721932 -98877998 + AluSg SINE Alu 1 288 -22 12650 216 26 25 chrX 63721932 63722435 -98877495 + L1MA9 LINE L1 3868 4369 -2964 2295 163 29 3 chrX 63722435 63722821 -98877109 + MSTD LTR MaLR 1 396 0 12650 216 26 25 chrX 63722821 63723105 -98876825 + L1MA9 LINE L1 4369 4651 -2682 2378 82 16 3 chrX 63723105 63723410 -98876520 + AluY SINE Alu 1 309 -2 12650 216 26 25 chrX 63723410 63725828 -98874102 + L1MA9 LINE L1 4651 7067 -266 207 0 0 0 chrX 63725828 63725851 -98874079 + (CA)n Simple_repeat Simple_repeat 2 24 0 12650 216 26 25 chrX 63725851 63725971 -98873959 + L1MA9 LINE L1 7067 7185 -148 2365 111 19 8 chrX 63725971 63726331 -98873599 - THE1B LTR MaLR 0 364 1 10960 99 13 30 chrX 63726331 63727938 -98871992 - THE1B-int LTR MaLR 0 1580 1 2714 78 17 6 chrX 63727938 63728298 -98871632 - THE1B LTR MaLR 0 364 1 12650 216 26 25 chrX 63728298 63728672 -98871258 + L1MA9 LINE L1 7184 7295 -38 7495 34 0 4 chrX 63728701 63730173 -98869757 + L1PA5 LINE L1 4684 6151 -3 26 0 0 0 chrX 63730173 63730199 -98869731 + AT_rich Low_complexity Low_complexity 1 26 0 602 262 30 0 chrX 63730561 63730725 -98869205 + MER5B DNA MER1_type 5 173 -5 400 302 176 0 chrX 63731870 63732029 -98867901 - L2 LINE L2 -1917 1397 1211 5271 165 39 2 chrX 63732029 63732266 -98867664 + L1PA16 LINE L1 4153 4380 -1786 351 0 0 0 chrX 63732266 63732305 -98867625 + (CA)n Simple_repeat Simple_repeat 2 40 0 5271 165 39 2 chrX 63732305 63734002 -98865928 + L1PA16 LINE L1 4380 6144 -22 255 103 0 0 chrX 63734002 63734041 -98865889 + (CATA)n Simple_repeat Simple_repeat 2 40 0 614 283 25 6 chrX 63734041 63734200 -98865730 - L2 LINE L2 -2098 1216 1055 225 0 0 0 chrX 63734730 63734755 -98865175 + (TA)n Simple_repeat Simple_repeat 2 26 0 194 214 24 0 chrX 63734990 63735032 -98864898 + MIR SINE MIR 112 154 -108 318 213 64 156 chrX 63735053 63735116 -98864814 + L2 LINE L2 3181 3225 -88 2196 69 17 3 chrX 63735116 63735404 -98864526 - AluSp SINE Alu -21 292 1 318 213 64 156 chrX 63735404 63735481 -98864449 + L2 LINE L2 3225 3308 -5 7547 25 7 0 chrX 63735548 63736905 -98863025 - L1PA4 LINE L1 0 6155 4804 6165 25 4 0 chrX 63736905 63737666 -98862264 + L1PA4 LINE L1 4016 4779 -1367 1378 286 146 25 chrX 63738153 63738838 -98861092 + L2 LINE L2 932 1699 -1615 307 275 28 46 chrX 63738847 63738956 -98860974 + L2 LINE L2 1861 1967 -1347 584 280 195 36 chrX 63739059 63739448 -98860482 + L2 LINE L2 2495 2945 -369 912 306 100 34 chrX 63739494 63739783 -98860147 + L2 LINE L2 2815 3148 -165 2052 114 0 24 chrX 63739783 63740124 -98859806 - L1MA4 LINE L1 -1 6299 5967 912 306 100 34 chrX 63740124 63740302 -98859628 + L2 LINE L2 3148 3313 0 253 213 206 43 chrX 63740369 63740463 -98859467 - MIR SINE MIR -91 117 7 2305 101 0 0 chrX 63740631 63740928 -98859002 + AluSx SINE Alu 1 297 -15 20516 192 23 24 chrX 63741306 63744783 -98855147 + L1PA12 LINE L1 1 4554 -3030 737 54 0 0 chrX 63744783 63744875 -98855055 + L1PA5 LINE L1 6047 6138 -16 20516 192 23 24 chrX 63744875 63747067 -98852863 + L1PA12 LINE L1 4554 6747 -837 1281 62 0 0 chrX 63747092 63747252 -98852678 + L1PA11 LINE L1 6015 6174 0 493 233 39 0 chrX 63747342 63747445 -98852485 - L2 LINE L2 -12 3301 3195 271 284 78 39 chrX 63747632 63747734 -98852196 + MIR SINE MIR 17 122 -140 204 40 0 0 chrX 63747734 63747759 -98852171 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 299 309 95 48 chrX 63748152 63748320 -98851610 - MIR SINE MIR -56 206 31 276 30 0 0 chrX 63748383 63748416 -98851514 + (TCC)n Simple_repeat Simple_repeat 1 33 0 599 284 71 18 chrX 63748481 63748706 -98851224 - MIR SINE MIR -6 256 20 207 298 18 0 chrX 63749081 63749138 -98850792 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 590 246 132 41 chrX 63749483 63749703 -98850227 + MIR SINE MIR 10 249 -13 447 221 42 0 chrX 63750121 63750216 -98849714 - MIR SINE MIR -3 259 161 273 229 0 16 chrX 63750268 63750329 -98849601 - L2 LINE L2 -62 3251 3192 191 281 62 0 chrX 63750346 63750410 -98849520 - MIR SINE MIR -148 114 47 4601 176 28 8 chrX 63750415 63751764 -98848166 + L1MB4 LINE L1 4806 6180 0 627 304 134 5 chrX 63752711 63752935 -98846995 - MIR SINE MIR 0 262 10 256 299 47 56 chrX 63753421 63753528 -98846402 + L3 LINE CR1 1467 1572 -5 215 310 35 0 chrX 63753898 63753956 -98845974 - L2 LINE L2 -25 3247 3188 2200 155 55 38 chrX 63754035 63754454 -98845476 - MSTB LTR MaLR 0 426 1 210 250 80 91 chrX 63754522 63754610 -98845320 - L2 LINE L2 -194 3078 2992 628 306 21 87 chrX 63754625 63754714 -98845216 - L2 LINE L2 -735 2579 2486 1891 68 4 4 chrX 63754714 63754951 -98844979 + AluSg SINE Alu 64 300 -10 628 306 21 87 chrX 63754951 63755345 -98844585 - L2 LINE L2 -828 2486 2128 1428 117 45 79 chrX 63755354 63755619 -98844311 - Tigger3(Golem) DNA MER2_type -3 3026 2771 758 184 0 34 chrX 63755616 63755763 -98844167 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 236 323 45 23 chrX 63755766 63755899 -98844031 - L2 LINE L2 -1193 2121 1986 1877 164 0 19 chrX 63755899 63756209 -98843721 + AluSx SINE Alu 1 304 -8 4716 165 16 5 chrX 63756211 63757166 -98842764 + L1MB7 LINE L1 5202 6165 -19 25 31 0 0 chrX 63757277 63757309 -98842621 + AT_rich Low_complexity Low_complexity 1 32 0 763 368 77 32 chrX 63757319 63758245 -98841685 - L2 LINE L2 -1354 1960 994 180 271 51 17 chrX 63758801 63758860 -98841070 - L2 LINE L2 -219 3053 2993 2416 92 0 3 chrX 63759115 63759419 -98840511 - AluSx SINE Alu -9 303 1 518 270 0 85 chrX 63759444 63759644 -98840286 - MIR3 SINE MIR -9 199 17 201 222 67 0 chrX 63759950 63759995 -98839935 - MIR SINE MIR -99 163 116 259 236 0 0 chrX 63761598 63761653 -98838277 - L3 LINE CR1 0 1577 1523 448 262 22 49 chrX 63762904 63763087 -98836843 - MER5B DNA MER1_type 0 178 1 330 305 0 0 chrX 63763178 63763273 -98836657 + GA-rich Low_complexity Low_complexity 2 96 0 297 331 0 50 chrX 63763390 63763511 -98836419 - MER5A DNA MER1_type -7 182 68 4094 176 44 54 chrX 63763638 63765088 -98834842 - L1MB7 LINE L1 -2 6182 4744 851 332 65 39 chrX 63765088 63765471 -98834459 + L2 LINE L2 2878 3270 -2 279 0 0 0 chrX 63765696 63765727 -98834203 + (GA)n Simple_repeat Simple_repeat 1 31 0 469 348 58 14 chrX 63765937 63766383 -98833547 + L1MEd LINE L1 573 1038 -5081 422 226 0 98 chrX 63766410 63766574 -98833356 - L1P LINE L1 -1097 5049 4902 214 318 48 0 chrX 63766693 63766756 -98833174 + MIR SINE MIR 76 141 -67 201 74 0 0 chrX 63766835 63766862 -98833068 + (A)n Simple_repeat Simple_repeat 1 27 0 1331 218 12 8 chrX 63766959 63767211 -98832719 + MLT1A1 LTR MaLR 1 253 -112 3095 233 53 46 chrX 63767212 63768458 -98831472 + L1ME3A LINE L1 4517 5943 -391 1630 186 0 55 chrX 63768458 63768785 -98831145 + AluJo SINE Alu 1 309 -3 3095 233 53 46 chrX 63768785 63769180 -98830750 + L1ME3A LINE L1 5943 6334 0 383 248 159 32 chrX 63771869 63772026 -98827904 + MIR3 SINE MIR 9 185 -23 200 209 23 0 chrX 63774392 63774435 -98825495 + G-rich Low_complexity Low_complexity 4 47 0 337 226 101 121 chrX 63774441 63774689 -98825241 + L1M2 LINE L1 873 1115 -5734 223 250 0 0 chrX 63775797 63775853 -98824077 + A-rich Low_complexity Low_complexity 4 59 0 429 262 103 16 chrX 63776169 63776295 -98823635 + MIR3 SINE MIR 20 156 -52 672 234 86 97 chrX 63776707 63776997 -98822933 + Charlie8 DNA MER1_type 1 287 -2130 349 337 98 61 chrX 63777161 63777487 -98822443 + L2 LINE L2 2913 3250 -22 279 279 76 0 chrX 63777488 63777567 -98822363 + L2 LINE L2 3227 3311 -2 2190 119 0 0 chrX 63777890 63778262 -98821668 + AluSq SINE Alu 1 372 0 532 260 20 34 chrX 63778455 63778601 -98821329 + MIR SINE MIR 11 154 -108 812 224 84 79 chrX 63778636 63778733 -98821197 - LTR48B LTR ERV1 0 644 549 2563 159 40 17 chrX 63778733 63779155 -98820775 - MSTB1 LTR MaLR 0 432 1 812 224 84 79 chrX 63779155 63779588 -98820342 - LTR48B LTR ERV1 -95 549 3 2453 268 55 15 chrX 63779811 63780818 -98819112 + L2 LINE L2 2262 3313 0 2276 76 14 0 chrX 63781063 63781354 -98818576 - AluSx SINE Alu -14 298 4 16731 147 4 12 chrX 63781520 63784651 -98815279 + L1P LINE L1 404 3637 -2509 531 69 0 0 chrX 63786043 63786115 -98813815 + (TC)n Simple_repeat Simple_repeat 1 72 0 390 21 0 0 chrX 63786715 63786762 -98813168 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 378 294 114 68 chrX 63787522 63787977 -98811953 + L1M2 LINE L1 529 1004 -5845 467 60 15 0 chrX 63789011 63789078 -98810852 + (TC)n Simple_repeat Simple_repeat 1 68 0 417 39 0 0 chrX 63789678 63789729 -98810201 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 915 114 0 0 chrX 63790191 63790314 -98809616 - L1MA3 LINE L1 0 6305 6183 246 170 0 0 chrX 63790314 63790361 -98809569 + U5 snRNA snRNA 1 47 -69 2141 121 3 0 chrX 63790527 63790824 -98809106 - AluSx SINE Alu -14 298 1 255 240 204 27 chrX 63791777 63791980 -98807950 + MIR3 SINE MIR 11 244 -18 551 230 13 33 chrX 63792327 63792485 -98807445 - MIR SINE MIR -67 141 1 358 203 34 110 chrX 63793847 63793965 -98805965 - MIR SINE MIR -78 184 76 421 271 0 0 chrX 63794291 63794376 -98805554 - L2 LINE L2 -4 3268 3184 226 87 43 0 chrX 63794853 63794899 -98805031 + (TA)n Simple_repeat Simple_repeat 2 49 0 535 273 62 62 chrX 63794996 63795256 -98804674 - MIR SINE MIR -1 261 2 356 243 107 21 chrX 63796290 63796430 -98803500 - MIR3 SINE MIR -20 188 37 279 54 0 0 chrX 63798098 63798135 -98801795 + (CA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chrX 63798138 63798161 -98801769 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 541 312 64 45 chrX 63798267 63798738 -98801192 + L1ME4a LINE L1 5425 5904 -217 401 251 78 28 chrX 63799396 63799575 -98800355 - L1ME4a LINE L1 -214 5907 5720 480 243 110 7 chrX 63799951 63800087 -98799843 + MIR3 SINE MIR 45 194 -14 213 332 107 19 chrX 63800954 63801159 -98798771 + L2 LINE L2 2125 2347 -967 983 277 59 53 chrX 63801189 63801643 -98798287 + L2 LINE L2 2532 2987 -285 722 168 0 0 chrX 63801678 63801791 -98798139 - MLT1A1 LTR MaLR 0 365 253 2563 152 8 20 chrX 63801802 63802203 -98797727 + MSTD LTR MaLR 1 396 0 2921 195 49 13 chrX 63802204 63803398 -98796532 - L1MD1 LINE L1 -404 5838 4614 3794 189 46 32 chrX 63803426 63803938 -98795992 - L1ME1 LINE L1 -5 6230 5727 1115 192 57 119 chrX 63803938 63804277 -98795653 + MLT1A1 LTR MaLR 1 315 -50 2379 81 0 3 chrX 63804277 63804572 -98795358 + AluSq SINE Alu 1 294 -19 1115 192 57 119 chrX 63804572 63804618 -98795312 + MLT1A1 LTR MaLR 315 362 -3 3794 189 46 32 chrX 63804618 63805556 -98794374 - L1ME1 LINE L1 -508 5727 4765 * 5532 157 37 28 chrX 63805553 63806021 -98793909 - L1MA7 LINE L1 0 6291 5829 1466 176 65 14 chrX 63806021 63806311 -98793619 - AluJo SINE Alu -7 305 1 5532 157 37 28 chrX 63806311 63807297 -98792633 - L1MA7 LINE L1 -462 5829 4813 2334 114 0 0 chrX 63807297 63807604 -98792326 - AluSg SINE Alu -3 307 1 5532 157 37 28 chrX 63807604 63807875 -98792055 - L1MA7 LINE L1 -1478 4813 4546 6940 230 53 26 chrX 63807876 63809893 -98790037 - L1ME1 LINE L1 -1428 4787 2718 1625 142 98 10 chrX 63809937 63810232 -98789698 - MLT1A1 LTR MaLR -44 321 1 2053 225 17 21 chrX 63810232 63810288 -98789642 - L1ME1 LINE L1 -3522 2693 2638 2443 64 0 3 chrX 63810288 63810583 -98789347 - AluSc SINE Alu -15 294 1 2053 225 17 21 chrX 63810583 63811190 -98788740 - L1ME1 LINE L1 -3577 2638 2062 636 284 104 8 chrX 63811198 63811466 -98788464 + L1M4 LINE L1 3325 3618 -2528 329 107 0 18 chrX 63811466 63811522 -98788408 + (GAA)n Simple_repeat Simple_repeat 1 55 0 731 163 0 8 chrX 63811526 63811649 -98788281 + L1M4 LINE L1 3606 3727 -2419 2955 238 84 17 chrX 63811652 63811984 -98787946 - L2 LINE L2 -2108 1206 898 2517 85 0 0 chrX 63811984 63812291 -98787639 - AluSx SINE Alu -5 307 1 2955 238 84 17 chrX 63812291 63812945 -98786985 - L2 LINE L2 -2416 898 103 958 202 50 85 chrX 63812956 63813006 -98786924 - MLT2C1 LTR ERVL -22 442 392 189 0 0 0 chrX 63813006 63813027 -98786903 + (GA)n Simple_repeat Simple_repeat 2 22 0 958 202 50 85 chrX 63813027 63813464 -98786466 - MLT2C1 LTR ERVL -72 392 1 7371 227 57 47 chrX 63813472 63815115 -98784815 - L1MEc LINE L1 -4072 2324 653 2431 41 34 0 chrX 63815115 63815406 -98784524 - AluY SINE Alu -10 301 1 7371 227 57 47 chrX 63815406 63816039 -98783891 - L1MEc LINE L1 -5743 653 27 2818 178 20 32 chrX 63816045 63816470 -98783460 - L1MB8 LINE L1 0 6178 5760 195 42 0 0 chrX 63816470 63816494 -98783436 + (TG)n Simple_repeat Simple_repeat 2 25 0 2818 178 20 32 chrX 63816494 63816664 -98783266 - L1MB8 LINE L1 -418 5760 5590 286 271 124 23 chrX 63816679 63816808 -98783122 - MIR SINE MIR -74 188 47 546 279 141 56 chrX 63816815 63817227 -98782703 + L1MC4a LINE L1 5510 5956 -1852 331 255 179 0 chrX 63818228 63818334 -98781596 + L2 LINE L2 3188 3312 -1 599 288 90 30 chrX 63818565 63818832 -98781098 + L2 LINE L2 3022 3304 -9 2306 89 13 10 chrX 63819107 63819411 -98780519 + AluSc SINE Alu 1 305 -4 389 233 92 17 chrX 63819510 63819630 -98780300 + MER5A DNA MER1_type 33 161 -28 795 181 0 0 chrX 63819630 63819757 -98780173 - LTR40b LTR ERVL 0 462 336 30 27 0 0 chrX 63819757 63819794 -98780136 + AT_rich Low_complexity Low_complexity 1 37 0 1453 136 140 16 chrX 63819794 63820051 -98779879 - AluJo SINE Alu -22 290 2 472 217 78 16 chrX 63820065 63820194 -98779736 - LTR40b LTR ERVL -120 342 206 901 153 0 7 chrX 63820197 63820341 -98779589 + FLAM_C SINE Alu 1 143 0 1380 183 51 8 chrX 63820341 63820370 -98779560 - LTR40a LTR ERVL -251 268 242 1736 68 0 21 chrX 63820370 63820605 -98779325 - L1PA7 LINE L1 0 6154 5925 1380 183 51 8 chrX 63820605 63820832 -98779098 - LTR40a LTR ERVL -277 242 1 283 261 14 0 chrX 63821154 63821223 -98778707 - L2 LINE L2 0 3272 3203 25 0 0 0 chrX 63821391 63821416 -98778514 + AT_rich Low_complexity Low_complexity 1 25 0 254 353 16 27 chrX 63821663 63821850 -98778080 - L2 LINE L2 -264 3008 2824 697 294 13 8 chrX 63821903 63822141 -98777789 + MIR SINE MIR 18 256 -6 198 103 0 0 chrX 63822826 63822855 -98777075 + (CA)n Simple_repeat Simple_repeat 2 30 0 3845 184 13 20 chrX 63823697 63824215 -98775715 + L1MD2 LINE L1 5614 6127 -232 201 74 0 0 chrX 63824215 63824242 -98775688 + (CA)n Simple_repeat Simple_repeat 2 28 0 3845 184 13 20 chrX 63824242 63824474 -98775456 + L1MD2 LINE L1 6127 6359 0 2504 77 53 3 chrX 63824656 63824994 -98774936 + THE1A LTR MaLR 1 355 0 11810 92 5 4 chrX 63824994 63826573 -98773357 + THE1A-int LTR MaLR 1 1580 0 2552 107 6 3 chrX 63826573 63826927 -98773003 + THE1A LTR MaLR 1 355 0 1154 240 71 60 chrX 63827027 63827472 -98772458 + HAL1b LINE L1 77 515 -833 2393 70 0 3 chrX 63827472 63827770 -98772160 - AluY SINE Alu -14 297 1 1154 240 71 60 chrX 63827770 63828421 -98771509 + HAL1b LINE L1 515 1295 -53 270 345 34 17 chrX 63828805 63828924 -98771006 - L2 LINE L2 -15 3257 3137 601 269 57 0 chrX 63829305 63829498 -98770432 - MIR SINE MIR -10 252 49 201 351 32 11 chrX 63830327 63830421 -98769509 - L2 LINE L2 -7 3306 3211 459 202 8 124 chrX 63830421 63830550 -98769380 + MER81 DNA DNA 1 114 0 535 353 40 23 chrX 63830722 63831022 -98768908 - L2 LINE L2 0 3272 2968 379 283 8 8 chrX 63831243 63831363 -98768567 + MLT1J2 LTR MaLR 1 120 -330 541 295 19 6 chrX 63831460 63831616 -98768314 + MLT1J2 LTR MaLR 280 437 -13 218 323 138 15 chrX 63831691 63831821 -98768109 + L2 LINE L2 3127 3272 0 204 314 0 14 chrX 63833025 63833095 -98766835 + L2 LINE L2 3204 3272 0 518 255 65 38 chrX 63833245 63833429 -98766501 - MER117 DNA MER1_type -5 192 4 293 356 0 7 chrX 63833679 63833814 -98766116 + L2 LINE L2 2918 3051 -221 212 241 19 0 chrX 63833874 63833928 -98766002 - L2 LINE L2 -1 3312 3258 986 296 87 66 chrX 63834077 63834243 -98765687 + L2 LINE L2 2166 2327 -987 2346 103 3 0 chrX 63834243 63834543 -98765387 - AluSx SINE Alu -11 301 1 986 296 87 66 chrX 63834543 63835100 -98764830 + L2 LINE L2 2327 2904 -410 191 314 0 0 chrX 63835140 63835191 -98764739 + L2 LINE L2 2990 3040 -232 561 278 21 7 chrX 63835321 63835465 -98764465 + L2 LINE L2 3127 3272 0 332 267 33 60 chrX 63835826 63836019 -98763911 - MIR SINE MIR -52 210 25 1670 220 101 15 chrX 63836648 63837112 -98762818 + MLT1D LTR MaLR 2 505 0 785 228 29 15 chrX 63837712 63837918 -98762012 - MIR SINE MIR 0 262 54 523 281 75 0 chrX 63837968 63838128 -98761802 - MER5B DNA MER1_type 0 178 7 556 207 42 27 chrX 63838333 63838511 -98761419 - MIR SINE MIR -56 206 20 547 289 158 14 chrX 63838764 63839124 -98760806 - L1ME4a LINE L1 -59 6062 5651 205 184 0 0 chrX 63839151 63839189 -98760741 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 3072 183 28 20 chrX 63840750 63841358 -98758572 - L1MB8 LINE L1 -5 6173 5561 281 328 165 51 chrX 63841396 63841708 -98758222 + L2 LINE L2 2205 2595 -719 2415 89 3 0 chrX 63841708 63842010 -98757920 + AluSp SINE Alu 1 303 -10 281 328 165 51 chrX 63842010 63842188 -98757742 + L2 LINE L2 2595 2751 -563 435 362 30 46 chrX 63842270 63842599 -98757331 + L2 LINE L2 2914 3237 -35 362 273 117 7 chrX 63842660 63842814 -98757116 - MIR SINE MIR -27 235 65 434 280 19 0 chrX 63844444 63844551 -98755379 + MIR3 SINE MIR 77 185 -23 388 200 139 17 chrX 63846386 63846501 -98753429 + L2 LINE L2 3177 3305 -8 2536 218 47 35 chrX 63846595 63847078 -98752852 - MLT1E2 LTR MaLR 0 626 133 2086 153 46 0 chrX 63847078 63847450 -98752480 - L1MB3 LINE L1 -2 6181 5793 2536 218 47 35 chrX 63847450 63847585 -98752345 - MLT1E2 LTR MaLR -493 133 1 579 274 108 9 chrX 63847727 63847950 -98751980 - MIR SINE MIR -7 255 11 1609 212 15 61 chrX 63848093 63848485 -98751445 + MLT1A2 LTR MaLR 1 374 0 1861 194 12 18 chrX 63849114 63849500 -98750430 - MLT1E3 LTR MaLR 0 624 208 248 231 0 0 chrX 63849508 63849560 -98750370 + CT-rich Low_complexity Low_complexity 2 53 0 4135 187 53 16 chrX 63849562 63850899 -98749031 - L1MD2 LINE L1 -16 6226 4894 982 219 61 8 chrX 63850903 63851149 -98748781 - MLT1E1 LTR MaLR -395 259 1 2170 96 17 7 chrX 63851179 63851471 -98748459 - AluSq SINE Alu -16 297 3 405 324 86 45 chrX 63852472 63852938 -98746992 + L2 LINE L2 258 742 -2572 314 296 11 11 chrX 63852940 63853028 -98746902 + MER5B DNA MER1_type 31 118 -60 4338 179 60 21 chrX 63853344 63854820 -98745110 - MER52A LTR ERV1 0 1755 7 279 0 0 0 chrX 63855164 63855195 -98744735 + (CA)n Simple_repeat Simple_repeat 2 32 0 392 326 153 28 chrX 63855198 63855808 -98744122 + L2 LINE L2 1684 2369 -945 305 238 0 0 chrX 63856004 63856067 -98743863 + L2 LINE L2 3210 3272 0 189 246 169 15 chrX 63856450 63856515 -98743415 - L2 LINE L2 0 3272 3198 222 351 44 9 chrX 63856650 63856764 -98743166 + MIR3 SINE MIR 55 172 -36 301 267 59 0 chrX 63858137 63858238 -98741692 + MIR SINE MIR 42 148 -60 246 267 10 50 chrX 63859504 63859605 -98740325 - L1MC4a LINE L1 -1834 5974 5878 377 222 144 33 chrX 63860141 63860294 -98739636 - Charlie8 DNA MER1_type -2157 260 91 893 202 129 17 chrX 63860303 63860536 -98739394 - MIR SINE MIR 0 262 4 209 309 55 67 chrX 63860902 63861067 -98738863 + MIR SINE MIR 24 186 -76 1385 262 66 17 chrX 63863257 63863966 -98735964 - L2 LINE L2 -46 3267 2528 242 268 14 14 chrX 63864351 63864422 -98735508 - MIR3 SINE MIR -40 168 98 626 207 71 18 chrX 63865220 63865389 -98734541 + MER5B DNA MER1_type 1 178 0 309 271 71 0 chrX 63865825 63865910 -98734020 + L2 LINE L2 3223 3313 0 297 324 33 66 chrX 63866014 63866324 -98733606 - L2 LINE L2 -223 3049 2734 302 319 75 9 chrX 63866444 63866657 -98733273 - L2 LINE L2 -630 2684 2458 344 303 198 12 chrX 63866667 63866829 -98733101 - MIR SINE MIR -1 261 70 4627 168 203 19 chrX 63866852 63867926 -98732004 + MER52C LTR ERV1 7 1278 0 198 318 16 0 chrX 63867935 63867998 -98731932 - MIR SINE MIR -197 65 2 654 271 67 64 chrX 63868259 63868587 -98731343 + MER102b DNA MER1_type 12 340 -1 283 264 0 0 chrX 63871842 63871914 -98728016 + (TGG)n Simple_repeat Simple_repeat 1 72 0 318 300 109 9 chrX 63872853 63872963 -98726967 - MIR3 SINE MIR -2 206 86 24 0 0 0 chrX 63873158 63873182 -98726748 + AT_rich Low_complexity Low_complexity 1 24 0 833 176 4 145 chrX 63873430 63873685 -98726245 - MER20 DNA MER1_type 0 219 1 552 207 179 0 chrX 63873704 63873844 -98726086 + MER5A DNA MER1_type 4 168 -21 190 268 98 59 chrX 63873913 63874066 -98725864 + MER5A DNA MER1_type 4 162 -27 847 290 217 5 chrX 63874292 63875110 -98724820 + L2 LINE L2 2310 3312 -1 192 388 15 20 chrX 63875359 63875560 -98724370 - L2 LINE L2 -213 3059 2860 349 271 66 33 chrX 63875567 63875718 -98724212 - L1MC/D LINE L1 -2048 5760 5605 570 236 0 105 chrX 63877251 63877315 -98722615 + MER5B DNA MER1_type 5 74 -104 1732 190 20 0 chrX 63877315 63877615 -98722315 + AluJb SINE Alu 1 306 -6 570 236 0 105 chrX 63877615 63877741 -98722189 + MER5B DNA MER1_type 74 175 -3 262 338 15 44 chrX 63878730 63878866 -98721064 - MIR SINE MIR -59 149 18 717 301 93 12 chrX 63879440 63879762 -98720168 - L3 LINE CR1 -15 1562 1215 970 337 64 55 chrX 63879763 63879923 -98720007 - L2 LINE L2 -2 3270 3113 2425 124 0 0 chrX 63879923 63880285 -98719645 + MER47A DNA MER2_type 1 362 -4 970 337 64 55 chrX 63880285 63881174 -98718756 - L2 LINE L2 -159 3113 2224 1410 225 31 23 chrX 63881193 63881544 -98718386 + MLT1I LTR MaLR 51 404 -5 413 353 119 6 chrX 63881613 63881925 -98718005 - L2 LINE L2 -1192 2122 1776 * 650 302 122 21 chrX 63881888 63882176 -98717754 - L3 LINE CR1 -322 1255 939 185 375 45 11 chrX 63882282 63882370 -98717560 + L2 LINE L2 3146 3236 -36 1272 224 72 35 chrX 63882443 63882988 -98716942 + HAL1 LINE L1 1897 2461 -46 270 275 0 12 chrX 63883046 63883126 -98716804 + (TA)n Simple_repeat Simple_repeat 2 80 0 496 202 0 8 chrX 63883126 63883245 -98716685 + HAL1 LINE L1 2285 2402 -105 198 167 0 0 chrX 63883265 63883301 -98716629 + (TA)n Simple_repeat Simple_repeat 1 36 0 752 190 60 33 chrX 63884172 63884356 -98715574 - MIR SINE MIR 0 262 74 397 262 71 103 chrX 63884360 63884612 -98715318 - MIR SINE MIR 0 262 19 198 71 0 0 chrX 63884887 63884915 -98715015 + (CA)n Simple_repeat Simple_repeat 2 29 0 268 222 125 0 chrX 63885268 63885340 -98714590 + MIR SINE MIR 31 111 -97 272 213 16 0 chrX 63885355 63885416 -98714514 + MIR SINE MIR 66 127 -81 486 252 9 0 chrX 63885496 63885607 -98714323 + MIR SINE MIR 52 163 -99 627 272 47 0 chrX 63885718 63885887 -98714043 + MIR SINE MIR 44 220 -42 456 332 40 16 chrX 63886073 63886320 -98713610 + L1ME4a LINE L1 5411 5663 -458 754 210 113 4 chrX 63886604 63886859 -98713071 + L1ME4a LINE L1 5657 5940 -181 3791 126 10 82 chrX 63886860 63887470 -98712460 + L1MB4 LINE L1 5450 5992 -188 2328 103 10 0 chrX 63887470 63887771 -98712159 - AluSx SINE Alu -8 304 1 3791 126 10 82 chrX 63887771 63887948 -98711982 + L1MB4 LINE L1 5992 6180 0 630 249 90 5 chrX 63888916 63889105 -98710825 + MIR SINE MIR 40 244 -18 188 243 0 14 chrX 63890217 63890287 -98709643 + GA-rich Low_complexity Low_complexity 5 73 0 405 329 18 29 chrX 63891485 63891655 -98708275 - L3 LINE CR1 -11 1566 1399 434 293 13 8 chrX 63891696 63891859 -98708071 - MIR SINE MIR -62 146 38 384 314 206 14 chrX 63891865 63892142 -98707788 - L3 LINE CR1 -261 1316 987 525 280 7 28 chrX 63893268 63893411 -98706519 + MIR SINE MIR 20 159 -103 400 260 15 0 chrX 63893553 63893659 -98706271 - MIR SINE MIR -62 146 40 22 56 0 0 chrX 63896067 63896103 -98703827 + GC_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chrX 63896186 63896209 -98703721 + GC_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chrX 63896325 63896346 -98703584 + (CAG)n Simple_repeat Simple_repeat 1 21 0 29 101 0 0 chrX 63896621 63896720 -98703210 + GC_rich Low_complexity Low_complexity 1 99 0 233 227 14 41 chrX 63896738 63896955 -98702975 + (CCGCT)n Simple_repeat Simple_repeat 1 212 0 683 251 152 0 chrX 63898362 63898573 -98701357 - MIR SINE MIR -3 259 17 237 330 30 40 chrX 63898705 63898805 -98701125 + MIR3 SINE MIR 64 162 -46 258 341 51 42 chrX 63898857 63899074 -98700856 - L2 LINE L2 -225 3047 2829 404 271 60 38 chrX 63899111 63899244 -98700686 - L2 LINE L2 -36 3236 3101 270 368 0 0 chrX 63899348 63899435 -98700495 - L2 LINE L2 0 3313 3227 814 319 57 47 chrX 63899446 63899934 -98699996 - L2 LINE L2 -233 3039 2554 749 244 44 102 chrX 63901437 63901977 -98697953 - MLT1J LTR MaLR 0 511 3 1111 308 35 19 chrX 63902084 63902457 -98697473 + L3 LINE CR1 859 1237 -340 918 262 32 24 chrX 63902592 63902840 -98697090 - MIR SINE MIR 0 262 13 339 273 99 41 chrX 63903227 63903399 -98696531 + L2 LINE L2 620 801 -2513 381 281 43 55 chrX 63903421 63903585 -98696345 + L2 LINE L2 1227 1388 -1926 343 24 0 0 chrX 63903586 63903628 -98696302 - MSTB2 LTR MaLR 0 457 416 467 139 0 0 chrX 63903629 63903701 -98696229 - AluJ/FLAM SINE Alu -239 73 2 628 317 56 46 chrX 63903701 63904133 -98695797 + L2 LINE L2 2878 3313 0 248 229 207 57 chrX 63904279 63904419 -98695511 + L3 LINE CR1 1416 1576 -1 291 261 161 40 chrX 63906529 63906728 -98693202 + MIR SINE MIR 20 242 -20 504 246 86 32 chrX 63909434 63909621 -98690309 - MIR SINE MIR -55 207 11 253 254 0 28 chrX 63909721 63909792 -98690138 + CT-rich Low_complexity Low_complexity 1 69 0 1153 244 38 17 chrX 63909820 63910164 -98689766 - L1ME2 LINE L1 -8 6156 5806 * 2633 139 85 33 chrX 63910154 63910670 -98689260 - L1MB8 LINE L1 0 6178 5636 4508 149 41 9 chrX 63910770 63911527 -98688403 + L1MA10 LINE L1 5551 6331 -3 788 226 46 37 chrX 63911721 63911938 -98687992 - L1MEd LINE L1 -5896 223 5 867 278 74 39 chrX 63911951 63912383 -98687547 + L2 LINE L2 2216 2662 -652 1265 261 33 18 chrX 63912460 63912797 -98687133 - MER93a LTR ERV1 0 402 61 590 263 11 34 chrX 63912953 63913128 -98686802 - Charlie8 DNA MER1_type -2168 249 79 861 265 48 4 chrX 63913393 63913623 -98686307 + LTR16C LTR ERVL 252 491 0 819 270 72 16 chrX 63913651 63913955 -98685975 + L2 LINE L2 2928 3248 -65 228 135 0 0 chrX 63914757 63914794 -98685136 + (GA)n Simple_repeat Simple_repeat 2 38 0 1596 176 17 3 chrX 63915109 63915399 -98684531 - L1M4 LINE L1 -1848 4298 4005 1276 234 113 47 chrX 63915576 63916167 -98683763 - L2 LINE L2 -2 3311 2677 897 270 172 20 chrX 63916287 63916648 -98683282 + L2 LINE L2 2707 3125 -188 590 223 86 76 chrX 63916914 63916975 -98682955 - L1ME4a LINE L1 -2 6119 6060 3584 144 18 17 chrX 63916975 63917578 -98682352 + L1MB7 LINE L1 5574 6177 -7 590 223 86 76 chrX 63917578 63917830 -98682100 - L1ME4a LINE L1 -61 6060 5803 1911 162 3 9 chrX 63920153 63920468 -98679462 - MLT1A1 LTR MaLR -52 313 1 1365 173 6 109 chrX 63920553 63920900 -98679030 - AluSx SINE Alu -1 311 1 2091 131 3 6 chrX 63921112 63921424 -98678506 + AluSx SINE Alu 1 311 -1 6183 80 10 23 chrX 63921535 63923173 -98676757 - SVA Other Other -723 1386 2 284 0 0 27 chrX 63923179 63923216 -98676714 + (GGGAGA)n Simple_repeat Simple_repeat 2 37 0 311 250 148 19 chrX 63923313 63923421 -98676509 + MER5A DNA MER1_type 68 189 0 8945 150 33 43 chrX 63923640 63925343 -98674587 + L1MD2 LINE L1 1 1686 -4740 1991 239 140 14 chrX 63925361 63926138 -98673792 + L1M3e LINE L1 1 875 -6155 1764 151 6 10 chrX 63926172 63926484 -98673446 + L1 LINE L1 4414 4724 -1422 1600 85 0 5 chrX 63926484 63926724 -98673206 - pTR5 LTR ERV1 -2047 391 51 322 247 0 0 chrX 63926726 63926807 -98673123 - LTR30 LTR ERV1 -98 624 544 4092 59 10 18 chrX 63926807 63927494 -98672436 - pTR5 LTR ERV1 -413 2025 1194 1785 249 47 13 chrX 63927611 63928145 -98671785 + L1MD2 LINE L1 3612 4163 -2263 1442 147 94 11 chrX 63928201 63928466 -98671464 - AluJo SINE Alu -23 289 3 278 183 0 0 chrX 63928467 63928527 -98671403 + L1MD2 LINE L1 5169 5228 -1198 207 139 0 0 chrX 63928558 63928594 -98671336 + (GGA)n Simple_repeat Simple_repeat 2 37 0 3309 174 12 5 chrX 63928607 63929443 -98670487 + L1MD2 LINE L1 5244 6086 -436 197 33 33 0 chrX 63929469 63929499 -98670431 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 42769 42 21 0 chrX 63929499 63935518 -98664412 - L1PA2 LINE L1 -2 6153 2 5507 115 37 8 chrX 63935528 63936286 -98663644 - LTR17 LTR ERV1 0 780 1 3061 165 37 7 chrX 63936286 63936826 -98663104 + L1MD2 LINE L1 6082 6637 -2 1135 303 78 36 chrX 63936826 63937490 -98662440 - L1MEd LINE L1 -5200 919 228 * 3009 218 50 21 chrX 63937461 63938521 -98661409 + L1ME3A LINE L1 4985 6103 -67 2062 125 0 7 chrX 63938522 63938803 -98661127 + AluSx SINE Alu 1 279 -33 225 0 0 0 chrX 63938805 63938830 -98661100 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 1709 209 16 4 chrX 63939343 63939741 -98660189 - L1 LINE L1 -965 5181 4773 19527 167 20 11 chrX 63939772 63944151 -98655779 + L1PA14 LINE L1 5 4761 -2838 2156 115 3 43 chrX 63944151 63944288 -98655642 + AluSx SINE Alu 1 142 -170 2064 110 50 0 chrX 63944288 63944570 -98655360 + AluY SINE Alu 1 296 -15 2156 115 3 43 chrX 63944570 63944755 -98655175 + AluSx SINE Alu 142 310 -2 19527 167 20 11 chrX 63944755 63947621 -98652309 + L1PA14 LINE L1 4761 7599 0 4461 142 47 83 chrX 63948169 63948297 -98651633 + L1MB3 LINE L1 5205 5336 -847 2257 116 0 0 chrX 63948297 63948599 -98651331 + AluSx SINE Alu 1 302 -10 4461 142 47 83 chrX 63948599 63948610 -98651320 + L1MB3 LINE L1 5336 5346 -837 2024 153 0 0 chrX 63948610 63948910 -98651020 + AluSx SINE Alu 1 300 -12 4461 142 47 83 chrX 63948910 63949689 -98650241 + L1MB3 LINE L1 5346 6151 -32 1208 197 32 105 chrX 63949689 63950060 -98649870 - MER2 DNA MER2_type 0 344 1 4461 142 47 83 chrX 63950060 63950083 -98649847 + L1MB3 LINE L1 6151 6122 -61 1617 150 68 17 chrX 63950083 63950377 -98649553 + AluJo SINE Alu 1 309 -3 4461 142 47 83 chrX 63950377 63950423 -98649507 + L1MB3 LINE L1 6121 6167 -16 400 126 0 105 chrX 63950444 63950483 -98649447 + L1M4 LINE L1 1302 1344 -5198 2100 125 17 0 chrX 63950483 63950778 -98649152 + AluSx SINE Alu 1 300 -12 400 126 0 105 chrX 63950778 63950833 -98649097 + L1M4 LINE L1 1344 1386 -5156 18305 35 2 6 chrX 63950835 63953689 -98646241 + L1PA4 LINE L1 3298 6152 -3 42 0 0 0 chrX 63953673 63953715 -98646215 + AT_rich Low_complexity Low_complexity 1 42 0 * 544 280 52 19 chrX 63953693 63954154 -98645776 + L1MC/D LINE L1 4980 5472 -737 * 6559 139 99 81 chrX 63954152 63954737 -98645193 - L1MC3 LINE L1 -2 7783 7210 230 274 21 21 chrX 63954737 63954832 -98645098 - MLT1F1 LTR MaLR -433 134 40 6559 139 99 81 chrX 63954832 63955054 -98644876 - L1MC3 LINE L1 -575 7210 6993 332 43 22 0 chrX 63955054 63955100 -98644830 + (TG)n Simple_repeat Simple_repeat 2 48 0 6559 139 99 81 chrX 63955100 63955668 -98644262 - L1MC3 LINE L1 -792 6993 6287 759 45 27 9 chrX 63955677 63955789 -98644141 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1000 122 18 37 chrX 63955901 63956065 -98643865 + L1PA14 LINE L1 6001 6161 0 21 0 0 0 chrX 63956065 63956086 -98643844 + AT_rich Low_complexity Low_complexity 1 21 0 1299 133 44 0 chrX 63956106 63956331 -98643599 + L1M3 LINE L1 5256 5490 -678 15966 37 0 0 chrX 63956346 63958947 -98640983 + L1PA3 LINE L1 3557 6159 0 11003 60 8 1 chrX 63958949 63960355 -98639575 - L1P LINE L1 -795 5351 3936 2129 60 0 11 chrX 63960358 63960640 -98639290 + L1P LINE L1 3647 3925 -2221 307 217 17 42 chrX 63961077 63961197 -98638733 + T-rich Low_complexity Low_complexity 2 118 0 26 0 0 0 chrX 63961223 63961249 -98638681 + AT_rich Low_complexity Low_complexity 1 26 0 828 128 37 43 chrX 63961253 63961417 -98638513 - L1MA6 LINE L1 -10 6290 6128 2598 45 0 10 chrX 63961418 63961730 -98638200 - AluY SINE Alu -2 309 1 4881 158 26 48 chrX 63961734 63963271 -98636659 - L1MA6 LINE L1 0 6300 4785 2059 224 130 17 chrX 63963428 63964089 -98635841 - L1MDb LINE L1 -3539 2541 1736 2653 216 18 30 chrX 63964089 63964654 -98635276 - MER74A LTR ERVL 0 558 1 2059 224 130 17 chrX 63964654 63964954 -98634976 - L1MDb LINE L1 -4344 1736 1471 188 35 35 0 chrX 63964954 63964983 -98634947 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 37676 39 25 2 chrX 63964983 63970382 -98629548 - L1PA3 LINE L1 -18 6137 611 701 70 0 0 chrX 63970382 63970468 -98629462 - L1PA3 LINE L1 -6060 86 1 2554 185 85 48 chrX 63970471 63971526 -98628404 - L1MDb LINE L1 -4604 1476 374 533 252 30 94 chrX 63971762 63971996 -98627934 - L1MDb LINE L1 -5849 221 3 435 308 98 52 chrX 63972019 63972366 -98627564 + L2 LINE L2 2596 2958 -356 572 220 50 38 chrX 63972416 63972575 -98627355 - MIR SINE MIR 0 262 102 2683 167 32 2 chrX 63972853 63973296 -98626634 + MSTB2 LTR MaLR 1 456 -1 26 0 0 0 chrX 63973442 63973468 -98626462 + AT_rich Low_complexity Low_complexity 1 26 0 431 211 54 165 chrX 63973584 63973845 -98626085 + MLT1L LTR MaLR 378 609 -6 673 311 95 48 chrX 63973917 63973981 -98625949 - L2 LINE L2 -2696 618 558 1954 147 23 62 chrX 63973981 63974369 -98625561 + THE1C LTR MaLR 3 375 0 673 311 95 48 chrX 63974369 63974703 -98625227 - L2 LINE L2 -2756 558 201 562 238 88 7 chrX 63974986 63975133 -98624797 + LTR33A LTR ERVL 327 485 -38 2111 115 3 16 chrX 63975133 63975437 -98624493 + AluSq SINE Alu 1 300 -13 1042 273 72 42 chrX 63976342 63976824 -98623106 + MLT1K LTR MaLR 62 582 -6 362 330 84 26 chrX 63977282 63977473 -98622457 + MIR SINE MIR 2 203 -59 304 253 95 0 chrX 63977456 63977551 -98622379 + L2 LINE L2 2587 2690 -624 * 680 228 7 0 chrX 63977649 63977785 -98622145 - L1ME1 LINE L1 -52 6114 5978 655 270 129 60 chrX 63977787 63978381 -98621549 + L2 LINE L2 2684 3313 0 255 280 0 27 chrX 63978367 63978442 -98621488 + MIR SINE MIR 184 256 -6 * 3289 193 37 36 chrX 63978468 63978633 -98621297 + L1 LINE L1 3987 4150 -1996 243 0 0 0 chrX 63978633 63978660 -98621270 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3289 193 37 36 chrX 63978660 63978878 -98621052 + L1 LINE L1 4150 4366 -1780 2425 86 0 0 chrX 63978878 63979170 -98620760 + AluSp SINE Alu 3 294 -19 3289 193 37 36 chrX 63979170 63979511 -98620419 + L1 LINE L1 4366 4716 -1430 1734 165 14 7 chrX 63979511 63979802 -98620128 - AluJb SINE Alu -19 293 1 3289 193 37 36 chrX 63979802 63979879 -98620051 + L1 LINE L1 4716 4791 -1355 2289 76 13 7 chrX 63979991 63980292 -98619638 + AluY SINE Alu 1 303 -8 578 255 9 0 chrX 63980313 63980502 -98619428 + L1M4c LINE L1 2228 2461 -3963 619 238 157 12 chrX 63982888 63983060 -98616870 + MIR SINE MIR 51 247 -15 1688 231 45 23 chrX 63983683 63984081 -98615849 - MLT1I LTR MaLR 0 409 3 1039 251 55 0 chrX 63985207 63985442 -98614488 + MIR SINE MIR 2 249 -13 206 171 24 0 chrX 63985446 63985487 -98614443 + (CAT)n Simple_repeat Simple_repeat 2 43 0 623 282 66 5 chrX 63986863 63987076 -98612854 + L2 LINE L2 2523 2748 -566 357 300 109 52 chrX 63987077 63987307 -98612623 + L1MC4 LINE L1 7790 8032 -10 207 0 0 0 chrX 63987319 63987342 -98612588 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 586 220 132 166 chrX 63987365 63987971 -98611959 + L2 LINE L2 2735 3313 0 268 184 0 0 chrX 63988162 63988211 -98611719 + MIR SINE MIR 200 248 -14 306 277 101 0 chrX 63988490 63988609 -98611321 + L1MDa LINE L1 2448 2578 -3962 666 258 104 64 chrX 63988624 63989207 -98610723 + L1MDa LINE L1 2625 3238 -3302 1879 158 104 3 chrX 63989207 63989535 -98610395 - MLT1A1 LTR MaLR 0 365 5 666 258 104 64 chrX 63989535 63989603 -98610327 + L1MDa LINE L1 3238 3302 -3238 2005 92 21 28 chrX 63989724 63990008 -98609922 + L1PA10 LINE L1 5881 6162 -6 1025 201 11 11 chrX 63991556 63991745 -98608185 - MER5A DNA MER1_type 0 189 1 589 242 75 21 chrX 63992938 63993124 -98606806 - MIR SINE MIR 0 262 67 917 234 91 0 chrX 63993136 63993443 -98606487 + L1MDa LINE L1 3477 3811 -2729 1373 233 58 56 chrX 63993443 63993601 -98606329 + MSTD LTR MaLR 1 157 -239 2284 108 0 0 chrX 63993601 63993896 -98606034 + AluSx SINE Alu 1 295 -17 1373 233 58 56 chrX 63993896 63994132 -98605798 + MSTD LTR MaLR 157 396 0 4571 194 27 53 chrX 63994132 63995168 -98604762 + MSTD-int LTR MaLR 1 1009 -726 1060 180 11 11 chrX 63995223 63995406 -98604524 + MSTD LTR MaLR 214 396 0 3126 219 31 19 chrX 63995409 63996180 -98603750 + L1MDa LINE L1 3810 4589 -1951 321 254 197 16 chrX 63996216 63996338 -98603592 + L2 LINE L2 3129 3272 0 436 259 115 100 chrX 63998281 63998716 -98601214 - MLT1J2 LTR MaLR -2 448 1 735 134 0 0 chrX 63999510 63999607 -98600323 + AluJ/FLAM SINE Alu 1 97 -215 249 291 87 10 chrX 64000628 64000731 -98599199 - MIR3 SINE MIR -38 170 60 * 373 298 163 28 chrX 64000704 64000919 -98599011 - L3 LINE CR1 -1 1576 1333 350 271 35 24 chrX 64002136 64002306 -98597624 + (CAGT)n Simple_repeat Simple_repeat 2 173 0 199 241 17 17 chrX 64002446 64002504 -98597426 - L2 LINE L2 -213 3059 3002 241 222 88 81 chrX 64002610 64002758 -98597172 + MIR3 SINE MIR 43 190 -18 236 266 106 11 chrX 64003299 64003393 -98596537 - MIR3 SINE MIR -12 196 94 354 304 99 34 chrX 64003470 64003799 -98596131 - L2 LINE L2 -219 3053 2700 1040 215 56 0 chrX 64003845 64004059 -98595871 + MIR SINE MIR 24 249 -13 389 279 29 2 chrX 64004083 64004208 -98595722 - MIR SINE MIR -62 146 18 227 273 78 47 chrX 64004194 64004322 -98595608 - L2 LINE L2 -601 2713 2582 * 460 279 29 64 chrX 64005584 64005788 -98594142 - MIR3 SINE MIR -1 207 11 206 179 26 0 chrX 64005803 64005842 -98594088 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 230 333 0 0 chrX 64006576 64006639 -98593291 + GA-rich Low_complexity Low_complexity 4 66 0 576 211 78 67 chrX 64006720 64006900 -98593030 - MIR3 SINE MIR -6 202 21 679 249 85 0 chrX 64007651 64007816 -98592114 - MIR SINE MIR -6 256 78 733 328 187 14 chrX 64007916 64008434 -98591496 + L3 LINE CR1 969 1576 -1 312 295 0 29 chrX 64008473 64008578 -98591352 - L3b LINE CR1 -142 1441 1340 188 235 0 118 chrX 64008882 64008950 -98590980 - L3b LINE CR1 -169 1414 1355 886 210 119 75 chrX 64009587 64010025 -98589905 - LTR16A1 LTR ERVL 0 457 1 329 230 35 62 chrX 64010554 64010667 -98589263 - MIR SINE MIR -1 261 152 280 266 109 31 chrX 64010642 64010770 -98589160 - L2 LINE L2 -795 2519 2382 * 1304 305 51 2 chrX 64011292 64011744 -98588186 - MLT1L LTR MaLR 0 615 142 341 245 34 67 chrX 64011751 64011893 -98588037 - MIR SINE MIR -22 186 43 560 267 81 52 chrX 64012775 64012985 -98586945 + MIR SINE MIR 47 262 0 437 267 166 7 chrX 64012992 64013197 -98586733 + MIR SINE MIR 2 237 -25 232 269 19 0 chrX 64013290 64013342 -98586588 - L2 LINE L2 -86 3227 3175 224 321 24 0 chrX 64013365 64013449 -98586481 + MIR3 SINE MIR 109 194 -14 634 308 71 9 chrX 64013563 64013787 -98586143 + MIR SINE MIR 4 241 -21 26 30 0 0 chrX 64014053 64014086 -98585844 + AT_rich Low_complexity Low_complexity 1 33 0 184 191 0 95 chrX 64014808 64014850 -98585080 + MIR3 SINE MIR 120 157 -51 431 266 27 82 chrX 64015446 64015630 -98584300 + L3 LINE CR1 1400 1573 -4 452 248 39 16 chrX 64015639 64015768 -98584162 + MIR3 SINE MIR 76 207 -1 4829 219 70 18 chrX 64016083 64016284 -98583646 - L1 LINE L1 -1385 4761 4572 1324 147 34 161 chrX 64016284 64016699 -98583231 + MLT1A1 LTR MaLR 4 365 0 4829 219 70 18 chrX 64016699 64017473 -98582457 - L1 LINE L1 -1574 4572 3694 243 0 0 0 chrX 64017473 64017500 -98582430 + (TA)n Simple_repeat Simple_repeat 1 27 0 4829 219 70 18 chrX 64017500 64017873 -98582057 - L1 LINE L1 -2452 3694 3342 2836 193 115 35 chrX 64017870 64018839 -98581091 - L1M4c LINE L1 -4798 1848 823 * 435 263 23 8 chrX 64018876 64019009 -98580921 - L1M4c LINE L1 -6406 136 2 579 270 206 5 chrX 64019269 64019473 -98580457 - MIR SINE MIR 0 262 18 527 282 6 0 chrX 64019591 64019772 -98580158 - L1M4 LINE L1 -5194 1348 1167 388 327 0 30 chrX 64019940 64020105 -98579825 - MLT1J LTR MaLR -64 447 288 610 227 87 12 chrX 64020157 64020329 -98579601 - MLT1J LTR MaLR -317 194 10 270 0 0 0 chrX 64020625 64020655 -98579275 + (CA)n Simple_repeat Simple_repeat 2 31 0 498 295 94 58 chrX 64020690 64021053 -98578877 - L2 LINE L2 -67 3246 2871 2233 105 0 0 chrX 64021171 64021466 -98578464 - AluSg SINE Alu -15 295 1 450 182 83 50 chrX 64021835 64021956 -98577974 + MLT1H1 LTR MaLR 304 428 -127 7696 207 57 29 chrX 64022083 64024416 -98575514 + L1MC/D LINE L1 3077 5475 -743 556 277 63 0 chrX 64024628 64024787 -98575143 - MIR SINE MIR -21 241 73 1159 263 130 49 chrX 64024799 64025667 -98574263 - L2 LINE L2 0 3313 2372 234 62 0 0 chrX 64026308 64026340 -98573590 + (CA)n Simple_repeat Simple_repeat 2 33 0 218 214 11 0 chrX 64026475 64026564 -98573366 + GA-rich Low_complexity Low_complexity 2 91 0 433 141 0 14 chrX 64026775 64026846 -98573084 - MER116 DNA Mariner -8 72 3 279 316 68 51 chrX 64026888 64027182 -98572748 - L2 LINE L2 -586 2728 2430 274 264 264 9 chrX 64027483 64027589 -98572341 + MIR SINE MIR 81 213 -49 1151 282 146 38 chrX 64027907 64027971 -98571959 - MLT2F LTR ERVL 0 663 607 2637 20 0 0 chrX 64027971 64028273 -98571657 + AluY SINE Alu 1 302 -9 1151 282 146 38 chrX 64028273 64028647 -98571283 - MLT2F LTR ERVL -56 607 150 1788 67 22 0 chrX 64028647 64028872 -98571058 + MER30 DNA MER1_type 1 230 0 1151 282 146 38 chrX 64028872 64028988 -98570942 - MLT2F LTR ERVL -513 150 48 531 198 36 114 chrX 64029886 64030053 -98569877 + MIR SINE MIR 36 189 -73 560 250 88 32 chrX 64030088 64030304 -98569626 - MIR SINE MIR 0 262 35 183 80 0 0 chrX 64030603 64030628 -98569302 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 369 285 0 73 chrX 64030633 64030699 -98569231 - L2 LINE L2 -18 3295 3241 273 29 0 0 chrX 64030699 64030733 -98569197 + (CA)n Simple_repeat Simple_repeat 2 35 0 369 285 0 73 chrX 64030733 64030789 -98569141 - L2 LINE L2 -72 3241 3182 862 202 0 66 chrX 64031167 64031219 -98568711 - MER45A DNA AcHobo -1407 174 120 1971 105 14 3 chrX 64031219 64031513 -98568417 + AluSq SINE Alu 1 297 -16 862 202 0 66 chrX 64031513 64031643 -98568287 - MER45A DNA AcHobo -1461 120 4 1981 95 46 3 chrX 64031963 64032247 -98567683 + AluSc SINE Alu 1 296 -13 257 267 189 50 chrX 64032250 64032430 -98567500 + MIR SINE MIR 51 255 -7 513 249 130 12 chrX 64032445 64032613 -98567317 + MIR SINE MIR 37 229 -33 1180 252 188 18 chrX 64033478 64034264 -98565666 - L2 LINE L2 -1 3312 2420 872 293 59 15 chrX 64034858 64035182 -98564748 - L3 LINE CR1 -85 1492 1155 386 261 84 8 chrX 64036674 64036793 -98563137 - MIR SINE MIR -102 160 33 288 284 24 31 chrX 64036838 64036965 -98562965 + C-rich Low_complexity Low_complexity 3 128 0 266 49 0 24 chrX 64037173 64037214 -98562716 + (TG)n Simple_repeat Simple_repeat 1 40 0 1231 327 107 13 chrX 64037373 64038357 -98561573 + L2 LINE L2 1822 2897 -417 215 282 22 44 chrX 64038893 64039074 -98560856 + (CAGAGA)n Simple_repeat Simple_repeat 3 179 0 * 267 312 21 21 chrX 64038994 64039209 -98560721 + GA-rich Low_complexity Low_complexity 1 215 0 297 125 21 0 chrX 64039359 64039407 -98560523 - L3 LINE CR1 -161 1416 1368 259 77 0 26 chrX 64039375 64039414 -98560516 - L3b LINE CR1 -184 1399 1362 * 347 306 201 1 chrX 64039802 64039928 -98560002 + MIR SINE MIR 5 150 -63 443 204 142 62 chrX 64039965 64040127 -98559803 - L3 LINE CR1 -252 1325 1151 463 267 48 0 chrX 64041439 64041544 -98558386 + MIR SINE MIR 45 154 -108 42533 63 3 0 chrX 64041845 64047985 -98551945 - L1PA5 LINE L1 -1 6153 1 478 229 23 46 chrX 64048004 64048135 -98551795 + MIR3 SINE MIR 73 200 -8 1038 263 96 32 chrX 64048176 64048335 -98551595 - L2 LINE L2 0 3313 3166 1733 142 39 4 chrX 64048335 64048616 -98551314 + AluSx SINE Alu 1 291 -21 1038 263 96 32 chrX 64048616 64049163 -98550767 - L2 LINE L2 -147 3166 2567 500 261 58 7 chrX 64049799 64049937 -98549993 + MIR3 SINE MIR 25 169 -39 1548 108 14 0 chrX 64049964 64050186 -98549744 + AluSg/x SINE Alu 80 304 -6 1129 254 86 42 chrX 64050450 64050903 -98549027 + MLT1K LTR MaLR 1 473 -3 320 306 76 14 chrX 64050950 64051094 -98548836 + L2 LINE L2 2872 3024 -248 4583 202 56 51 chrX 64051106 64052296 -98547634 + L1M4 LINE L1 16 1211 -5331 1699 233 65 2 chrX 64052282 64052742 -98547188 + L1M4 LINE L1 3833 4321 -1825 * 4580 178 35 61 chrX 64052770 64053087 -98546843 + L1MB3 LINE L1 4156 4480 -1703 1671 163 3 30 chrX 64053087 64053387 -98546543 + AluJo SINE Alu 1 292 -20 4580 178 35 61 chrX 64053387 64053400 -98546530 + L1MB3 LINE L1 4480 4492 -1691 1394 170 40 32 chrX 64053400 64053677 -98546253 + AluJo SINE Alu 3 281 -31 324 0 0 0 chrX 64053677 64053713 -98546217 + (CA)n Simple_repeat Simple_repeat 1 36 0 4580 178 35 61 chrX 64053713 64054587 -98545343 + L1MB3 LINE L1 4491 5386 -797 2153 116 0 0 chrX 64054587 64054889 -98545041 + AluSx SINE Alu 1 302 -10 4580 178 35 61 chrX 64054889 64054900 -98545030 + L1MB3 LINE L1 5386 5396 -787 1915 155 0 0 chrX 64054900 64055203 -98544727 + AluSx SINE Alu 1 303 -9 4580 178 35 61 chrX 64055203 64055979 -98543951 + L1MB3 LINE L1 5396 6121 -62 394 184 92 0 chrX 64055979 64056055 -98543875 - MER2 DNA MER2_type 0 345 263 1139 174 29 14 chrX 64056144 64056351 -98543579 - MER2 DNA MER2_type -135 210 1 1517 150 68 17 chrX 64056374 64056668 -98543262 + AluJo SINE Alu 1 309 -3 228 48 0 0 chrX 64056672 64056714 -98543216 + L1MB3 LINE L1 6126 6167 -16 8091 232 58 62 chrX 64056737 64056774 -98543156 + L1M4 LINE L1 1298 1334 -5310 1990 125 17 0 chrX 64056774 64057069 -98542861 + AluSx SINE Alu 1 300 -12 8091 232 58 62 chrX 64057069 64057126 -98542804 + L1M4 LINE L1 1334 1390 -5254 17529 34 0 0 chrX 64057126 64059978 -98539952 + L1PA4 LINE L1 3298 6152 -3 8091 232 58 62 chrX 64059978 64061202 -98538728 + L1M4 LINE L1 1390 2617 -4027 2017 135 3 0 chrX 64061202 64061513 -98538417 + AluSx SINE Alu 1 312 0 8091 232 58 62 chrX 64061513 64061692 -98538238 + L1M4 LINE L1 2617 2795 -3849 2939 121 2 5 chrX 64061692 64062132 -98537798 + L1PA13 LINE L1 5720 6158 -5 8091 232 58 62 chrX 64062132 64062527 -98537403 + L1M4 LINE L1 2795 3190 -3454 2210 112 0 0 chrX 64062527 64062832 -98537098 - AluSx SINE Alu -7 305 1 8091 232 58 62 chrX 64062832 64064291 -98535639 + L1M4 LINE L1 3190 4653 -1991 941 102 0 0 chrX 64064291 64064440 -98535490 + AluSp/q SINE Alu 156 304 0 8091 232 58 62 chrX 64064440 64065150 -98534780 + L1M4 LINE L1 4653 5364 -1280 2116 119 0 0 chrX 64065150 64065444 -98534486 + AluSg SINE Alu 1 294 -16 8091 232 58 62 chrX 64065444 64065511 -98534419 + L1M4 LINE L1 5364 5430 -1214 2385 147 76 0 chrX 64065511 64065907 -98534023 + MSTB LTR MaLR 1 426 0 8091 232 58 62 chrX 64065907 64066038 -98533892 + L1M4 LINE L1 5430 5803 -841 279 266 21 21 chrX 64066039 64066133 -98533797 + L1 LINE L1 707 800 -6409 * 398 285 70 0 chrX 64066112 64066298 -98533632 + L1 LINE L1 1321 1519 -5690 389 213 12 0 chrX 64066293 64066373 -98533557 + L1 LINE L1 4871 4951 -2257 * 7954 174 25 54 chrX 64066360 64066373 -98533557 + L1MA4 LINE L1 3089 3101 -3199 1965 125 0 14 chrX 64066373 64066670 -98533260 + AluSg SINE Alu 2 294 -16 7954 174 25 54 chrX 64066670 64067552 -98532378 + L1MA4 LINE L1 3101 4007 -2293 2147 122 0 0 chrX 64067552 64067864 -98532066 + AluSx SINE Alu 1 312 0 7954 174 25 54 chrX 64067864 64068633 -98531297 + L1MA4 LINE L1 4007 4797 -1503 1267 157 0 32 chrX 64068633 64068837 -98531093 + AluJb SINE Alu 86 284 -28 189 94 0 0 chrX 64068837 64068869 -98531061 + (TA)n Simple_repeat Simple_repeat 2 33 0 1267 157 0 32 chrX 64068869 64068880 -98531050 + AluJb SINE Alu 284 294 -18 7954 174 25 54 chrX 64068880 64069476 -98530454 + L1MA4 LINE L1 4797 5409 -891 2157 84 0 39 chrX 64069476 64069785 -98530145 + AluSx SINE Alu 1 297 -15 7954 174 25 54 chrX 64069785 64070497 -98529433 + L1MA4 LINE L1 5409 6023 -277 1591 130 254 20 chrX 64070497 64070844 -98529086 - MSTA LTR MaLR 0 428 1 7954 174 25 54 chrX 64070844 64071110 -98528820 + L1MA4 LINE L1 6023 6295 -5 1691 160 0 4 chrX 64071298 64071579 -98528351 + AluJo SINE Alu 14 293 -19 2187 99 7 3 chrX 64071579 64071883 -98528047 - AluSx SINE Alu -7 305 1 22 70 0 0 chrX 64072082 64072125 -98527805 + AT_rich Low_complexity Low_complexity 1 43 0 4131 172 80 8 chrX 64072275 64072300 -98527630 + L1MB7 LINE L1 5280 5302 -882 342 0 0 0 chrX 64072300 64072338 -98527592 + (CA)n Simple_repeat Simple_repeat 1 38 0 4131 172 80 8 chrX 64072338 64073158 -98526772 + L1MB7 LINE L1 5302 6179 -5 562 247 191 6 chrX 64073248 64073426 -98526504 - MIR SINE MIR -5 257 47 510 244 116 52 chrX 64073845 64074017 -98525913 - MIR SINE MIR -36 226 44 237 288 78 0 chrX 64074196 64074323 -98525607 - MIR3 SINE MIR -113 149 12 280 254 109 55 chrX 64075191 64075301 -98524629 - MIR3 SINE MIR -33 175 60 289 228 149 35 chrX 64075348 64075462 -98524468 + L2 LINE L2 3185 3311 -2 596 271 14 0 chrX 64075995 64076139 -98523791 - MIR SINE MIR -78 184 39 2273 86 0 3 chrX 64076141 64076442 -98523488 - AluSq SINE Alu -13 300 1 687 227 151 0 chrX 64076916 64077088 -98522842 - MIR SINE MIR -30 232 35 456 248 116 71 chrX 64077614 64077812 -98522118 - MIR SINE MIR -25 237 31 845 272 45 0 chrX 64077927 64078129 -98521801 - MIR SINE MIR 0 262 52 180 329 13 26 chrX 64078766 64078842 -98521088 - L2 LINE L2 -346 2968 2894 214 350 81 32 chrX 64078915 64079038 -98520892 + L2 LINE L2 3111 3239 -33 488 284 112 39 chrX 64080005 64080237 -98519693 - MIR SINE MIR -8 254 6 401 282 100 29 chrX 64080314 64080491 -98519439 + MIR3 SINE MIR 5 192 -32 872 299 109 40 chrX 64080883 64081331 -98518599 + L2 LINE L2 2834 3312 -1 357 24 0 0 chrX 64081445 64081487 -98518443 + (TG)n Simple_repeat Simple_repeat 1 42 0 630 283 138 40 chrX 64081493 64081540 -98518390 - L2 LINE L2 -38 3275 3234 3443 125 36 27 chrX 64081540 64082130 -98517800 - LTR49 LTR ERV1 0 595 1 630 283 138 40 chrX 64082130 64082384 -98517546 - L2 LINE L2 -79 3234 2942 193 301 27 27 chrX 64082384 64082457 -98517473 + MIR3 SINE MIR 3 75 -133 1344 170 0 5 chrX 64082644 64082867 -98517063 + AluJo SINE Alu 1 222 -90 426 20 0 0 chrX 64082893 64082944 -98516986 + (CAA)n Simple_repeat Simple_repeat 2 52 0 210 307 39 122 chrX 64082949 64083154 -98516776 + MIR3 SINE MIR 2 189 -19 229 288 18 36 chrX 64083591 64083702 -98516228 - L3 LINE CR1 -437 1140 1032 240 279 69 86 chrX 64083963 64084311 -98515619 - L2 LINE L2 -6 3266 2925 335 247 39 0 chrX 64084316 64084393 -98515537 - MIR SINE MIR -71 191 112 244 254 178 17 chrX 64084362 64084480 -98515450 - MIR3 SINE MIR -65 143 7 * 293 270 67 0 chrX 64084460 64084549 -98515381 - MIR SINE MIR -70 192 98 589 248 155 29 chrX 64085058 64085264 -98514666 - MIR SINE MIR 0 262 31 710 155 77 30 chrX 64085620 64085788 -98514142 + MER53 DNA DNA 1 176 -13 532 219 158 33 chrX 64085795 64085978 -98513952 + MIR SINE MIR 33 238 -24 536 284 62 0 chrX 64086112 64086274 -98513656 - MIR SINE MIR -11 251 80 23 0 0 0 chrX 64086654 64086677 -98513253 + AT_rich Low_complexity Low_complexity 1 23 0 270 333 15 22 chrX 64087037 64087172 -98512758 - MIR3 SINE MIR -53 155 22 218 232 0 71 chrX 64087401 64087457 -98512473 + L2 LINE L2 3221 3272 0 653 303 30 20 chrX 64087461 64087742 -98512188 + L1ME3A LINE L1 5569 5867 -303 210 71 0 0 chrX 64087850 64087878 -98512052 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 292 200 71 14 chrX 64087950 64088020 -98511910 + MIR SINE MIR 18 91 -171 242 281 18 0 chrX 64088087 64088144 -98511786 - MIR3 SINE MIR -38 170 113 305 190 17 0 chrX 64088817 64088875 -98511055 - MIR SINE MIR -101 161 103 254 188 250 0 chrX 64089883 64089947 -98509983 - MIR SINE MIR -96 112 33 223 263 105 32 chrX 64089968 64090059 -98509871 + L2 LINE L2 3104 3201 -71 1063 237 32 8 chrX 64090059 64090312 -98509618 + MIR SINE MIR 4 262 0 522 0 0 0 chrX 64090534 64090592 -98509338 + (TG)n Simple_repeat Simple_repeat 2 59 0 371 259 26 17 chrX 64091296 64091412 -98508518 + MIR SINE MIR 37 153 -55 736 215 51 6 chrX 64091444 64091602 -98508328 - MIR SINE MIR -92 170 6 299 202 30 14 chrX 64091616 64091701 -98508229 + MIR SINE MIR 56 139 -69 324 276 250 7 chrX 64091800 64091952 -98507978 - MIR SINE MIR -19 243 55 828 172 64 6 chrX 64092008 64092165 -98507765 + MER5B DNA MER1_type 1 166 -12 229 311 85 0 chrX 64092280 64092386 -98507544 - MIR3 SINE MIR -12 196 82 317 326 5 0 chrX 64092481 64092588 -98507342 - MIR SINE MIR -61 147 40 257 166 0 147 chrX 64093139 64093222 -98506708 + MIR SINE MIR 79 143 -65 3227 53 0 22 chrX 64093543 64093958 -98505972 - L1PA6 LINE L1 0 6154 5749 1283 103 122 9 chrX 64094119 64094333 -98505597 - AluSg/x SINE Alu -1 311 74 612 245 122 5 chrX 64094341 64094537 -98505393 - L2 LINE L2 -541 2773 2555 221 130 22 22 chrX 64095512 64095558 -98504372 + MIR SINE MIR 90 135 -73 250 312 0 30 chrX 64096812 64096935 -98502995 - MIR SINE MIR -60 148 59 402 21 0 0 chrX 64097000 64097047 -98502883 + (TG)n Simple_repeat Simple_repeat 1 47 0 228 135 0 0 chrX 64097410 64097447 -98502483 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 180 200 0 chrX 64097577 64097627 -98502303 - MIR SINE MIR -65 143 84 640 255 61 56 chrX 64097768 64097999 -98501931 - MIR SINE MIR -1 261 30 465 229 101 11 chrX 64098329 64098487 -98501443 + MIR3 SINE MIR 37 205 -3 382 233 0 58 chrX 64098636 64098722 -98501208 - L2 LINE L2 0 3272 3192 251 301 13 32 chrX 64098794 64098950 -98500980 + CT-rich Low_complexity Low_complexity 5 157 0 265 196 0 0 chrX 64099445 64099491 -98500439 + MIR SINE MIR 105 150 -112 570 245 28 21 chrX 64099834 64099977 -98499953 + MIR SINE MIR 2 145 -117 447 242 0 11 chrX 64100038 64100133 -98499797 + MIR3 SINE MIR 97 190 -18 2075 95 0 3 chrX 64100329 64100671 -98499259 - AluSg SINE Alu 0 341 1 184 282 0 0 chrX 64101181 64101220 -98498710 + MIR SINE MIR 106 144 -118 274 293 0 0 chrX 64101468 64101550 -98498380 - MIR SINE MIR -101 107 26 740 132 79 89 chrX 64101760 64101793 -98498137 - MER53 DNA DNA -1 188 156 2478 90 3 0 chrX 64101793 64102103 -98497827 - AluSp SINE Alu -2 311 1 740 132 79 89 chrX 64102103 64102259 -98497671 - MER53 DNA DNA -33 156 1 342 181 0 124 chrX 64103006 64103111 -98496819 - MER103 DNA DNA -65 101 10 384 40 0 0 chrX 64103488 64103538 -98496392 + (GA)n Simple_repeat Simple_repeat 1 50 0 381 208 8 125 chrX 64103871 64103949 -98495981 + L2 LINE L2 3157 3218 -54 495 95 0 0 chrX 64103949 64104023 -98495907 + (TG)n Simple_repeat Simple_repeat 1 74 0 381 208 8 125 chrX 64104023 64104064 -98495866 + L2 LINE L2 3218 3262 -10 * 1215 209 12 4 chrX 64104047 64104300 -98495630 - MIR SINE MIR -5 257 3 531 0 0 0 chrX 64104355 64104414 -98495516 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 26 30 0 0 chrX 64104996 64105029 -98494901 + AT_rich Low_complexity Low_complexity 1 33 0 1944 146 0 30 chrX 64105029 64105330 -98494600 - AluSx SINE Alu -20 292 1 770 294 28 0 chrX 64105425 64105639 -98494291 + MIR SINE MIR 2 221 -41 2327 110 0 7 chrX 64105694 64106003 -98493927 - AluSc SINE Alu -2 307 1 228 242 0 0 chrX 64106045 64106108 -98493822 - MIR SINE MIR -73 135 72 2100 111 42 0 chrX 64106598 64106887 -98493043 - AluSx SINE Alu -11 301 1 411 266 120 34 chrX 64107267 64107489 -98492441 - MIR SINE MIR -19 243 6 2225 115 3 0 chrX 64107639 64107934 -98491996 - AluSp SINE Alu -17 296 1 201 191 0 48 chrX 64109875 64109917 -98490013 + L3 LINE CR1 1517 1556 -21 233 336 118 0 chrX 64110114 64110224 -98489706 + MIR SINE MIR 16 138 -70 2574 71 3 0 chrX 64110273 64110627 -98489303 - AluY SINE Alu 0 355 1 2061 117 19 10 chrX 64110640 64110949 -98488981 - AluJb SINE Alu 0 312 1 645 222 33 13 chrX 64111070 64111223 -98488707 - MIR SINE MIR -28 234 79 530 291 25 35 chrX 64111900 64112099 -98487831 - MIR3 SINE MIR -5 203 7 180 77 0 0 chrX 64112132 64112158 -98487772 + (CA)n Simple_repeat Simple_repeat 1 26 0 275 167 17 50 chrX 64113035 64113155 -98486775 + CT-rich Low_complexity Low_complexity 1 116 0 325 259 121 54 chrX 64113386 64113552 -98486378 + MIR3 SINE MIR 31 207 -1 363 283 17 0 chrX 64113961 64114081 -98485849 - MIR SINE MIR -60 148 27 414 176 50 76 chrX 64114927 64115046 -98484884 - MIR SINE MIR -117 145 30 491 287 126 6 chrX 64115125 64115299 -98484631 - MER91A DNA MER1_type 0 196 2 388 268 32 8 chrX 64115701 64115824 -98484106 + MIR3 SINE MIR 58 183 -25 573 264 39 33 chrX 64115953 64116135 -98483795 + MIR SINE MIR 61 243 -19 182 194 0 0 chrX 64116138 64116174 -98483756 - L2 LINE L2 0 3313 3278 983 228 69 9 chrX 64116182 64116414 -98483516 + MIR SINE MIR 6 251 -11 338 258 11 22 chrX 64116401 64116490 -98483440 - L2 LINE L2 -30 3283 3196 * 219 319 87 0 chrX 64116631 64116700 -98483230 - L2 LINE L2 -11 3261 3187 206 313 94 19 chrX 64116734 64116894 -98483036 - L2 LINE L2 -209 3104 2933 299 350 17 0 chrX 64117077 64117197 -98482733 - MIR SINE MIR -61 147 26 243 103 0 0 chrX 64117513 64117552 -98482378 + (CA)n Simple_repeat Simple_repeat 1 39 0 246 136 0 0 chrX 64117926 64117970 -98481960 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 539 288 26 45 chrX 64117993 64118102 -98481828 - MIR SINE MIR 0 262 152 2392 84 0 0 chrX 64118102 64118389 -98481541 - AluSc SINE Alu -22 287 1 539 288 26 45 chrX 64118389 64118543 -98481387 - MIR SINE MIR -110 152 4 280 295 162 15 chrX 64118763 64119032 -98480898 - L2 LINE L2 -182 3090 2788 309 109 0 0 chrX 64119162 64119217 -98480713 + (TG)n Simple_repeat Simple_repeat 1 55 0 385 266 125 9 chrX 64119466 64119679 -98480251 + MIR3 SINE MIR 8 248 -14 331 326 87 0 chrX 64121165 64121303 -98478627 - L2 LINE L2 -1 3271 3122 215 290 10 20 chrX 64121342 64121442 -98478488 + (CCA)n Simple_repeat Simple_repeat 3 101 0 704 202 15 84 chrX 64122101 64122304 -98477626 + MER5A DNA MER1_type 1 189 0 544 242 8 15 chrX 64122319 64122451 -98477479 + MIR SINE MIR 34 164 -98 980 279 54 69 chrX 64122781 64123300 -98476630 - MLT1J LTR MaLR 0 511 1 556 285 160 0 chrX 64123625 64123825 -98476105 - MIR SINE MIR -18 244 13 264 331 41 8 chrX 64123859 64123980 -98475950 + MIR SINE MIR 118 242 -20 245 316 0 11 chrX 64124255 64124350 -98475580 - MIR SINE MIR -62 146 53 274 349 98 28 chrX 64124468 64124723 -98475207 + L2 LINE L2 2995 3267 -5 297 0 0 0 chrX 64125137 64125170 -98474760 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 147 0 0 chrX 64125217 64125251 -98474679 + (TAA)n Simple_repeat Simple_repeat 2 35 0 359 283 197 0 chrX 64126019 64126171 -98473759 + MER5A DNA MER1_type 8 189 0 591 302 6 12 chrX 64126182 64126354 -98473576 + MER5B DNA MER1_type 4 174 -4 238 317 67 17 chrX 64126408 64126528 -98473402 - L3b LINE CR1 -196 1387 1262 326 294 18 65 chrX 64126903 64127073 -98472857 + L3 LINE CR1 1291 1452 -125 2450 74 0 7 chrX 64127200 64127496 -98472434 + AluSg1 SINE Alu 1 294 -15 2092 100 0 5 chrX 64127500 64127564 -98472366 + L1PB1 LINE L1 5708 6146 0 2092 99 0 3 chrX 64127564 64127866 -98472064 + L1PB1 LINE L1 5849 6151 0 304 231 138 54 chrX 64127955 64128085 -98471845 + MIR3 SINE MIR 42 182 -26 498 163 98 179 chrX 64128159 64128238 -98471692 - MER45A DNA AcHobo -1412 169 85 2353 69 14 0 chrX 64128238 64128528 -98471402 + AluY SINE Alu 1 294 -17 498 163 98 179 chrX 64128528 64128542 -98471388 - MER45A DNA AcHobo -1496 85 71 1868 162 21 0 chrX 64128542 64128832 -98471098 + AluJb SINE Alu 1 296 -16 498 163 98 179 chrX 64128832 64128921 -98471009 - MER45A DNA AcHobo -1510 71 1 483 353 11 16 chrX 64129345 64129529 -98470401 - MIR3 SINE MIR -25 183 1 389 323 106 12 chrX 64129536 64129697 -98470233 + MIR SINE MIR 47 222 -40 231 226 105 57 chrX 64129720 64129844 -98470086 - L2 LINE L2 0 3313 3184 607 259 199 0 chrX 64129983 64130184 -98469746 - MIR SINE MIR -9 253 13 3259 121 43 27 chrX 64130425 64131011 -98468919 + LTR49 LTR ERV1 1 595 0 359 238 0 0 chrX 64131153 64131233 -98468697 + MIR3 SINE MIR 116 195 -13 398 392 33 0 chrX 64131445 64131685 -98468245 + L2 LINE L2 2449 2696 -618 1700 198 5 27 chrX 64131830 64132203 -98467727 - MLT1A1 LTR MaLR 0 365 1 2195 106 27 0 chrX 64132318 64132610 -98467320 - AluSg SINE Alu -10 300 1 264 279 39 32 chrX 64132622 64132665 -98467265 - L1ME4a LINE L1 -189 5932 5891 1671 175 3 52 chrX 64132665 64132990 -98466940 - AluJo SINE Alu -3 309 1 264 279 39 32 chrX 64132990 64133100 -98466830 - L1ME4a LINE L1 -230 5891 5778 251 250 43 11 chrX 64133471 64133563 -98466367 + MER113 DNA MER1_type? 3 97 -424 2317 86 0 0 chrX 64133621 64133942 -98465988 - AluSc SINE Alu 0 321 1 744 245 59 78 chrX 64134654 64135062 -98464868 - L1ME4a LINE L1 -387 5734 5335 301 318 11 45 chrX 64135145 64135324 -98464606 + L2 LINE L2 2692 2864 -450 195 323 87 25 chrX 64135379 64135540 -98464390 + L2 LINE L2 2994 3164 -108 368 40 20 0 chrX 64136192 64136242 -98463688 + (CA)n Simple_repeat Simple_repeat 1 51 0 186 295 107 36 chrX 64136474 64136586 -98463344 - MIR SINE MIR -85 177 58 226 293 0 0 chrX 64136631 64136689 -98463241 + L2 LINE L2 3211 3268 -4 661 244 144 52 chrX 64136878 64136936 -98462994 - MIR SINE MIR -1 261 210 2318 100 0 0 chrX 64136936 64137393 -98462537 - AluSx SINE Alu 0 312 1 661 244 144 52 chrX 64137393 64137563 -98462367 - MIR SINE MIR -52 210 12 703 265 34 45 chrX 64137782 64137963 -98461967 + Charlie8 DNA MER1_type 3 182 -159 2009 167 25 8 chrX 64137963 64138322 -98461608 + MLT1A1 LTR MaLR 1 365 0 703 265 34 45 chrX 64138322 64138408 -98461522 + Charlie8 DNA MER1_type 182 267 -74 699 71 0 0 chrX 64139133 64139231 -98460699 + AluSg/x SINE Alu 213 310 0 951 183 0 11 chrX 64139811 64139991 -98459939 + MER5B DNA MER1_type 1 178 0 238 275 8 42 chrX 64140367 64140487 -98459443 - L1MC4 LINE L1 -1 8041 7926 297 266 0 55 chrX 64140630 64140739 -98459191 - MIR SINE MIR -101 161 59 221 296 52 17 chrX 64141449 64141564 -98458366 - MIR SINE MIR -79 183 65 409 249 106 74 chrX 64141976 64142165 -98457765 - MIR SINE MIR -4 258 64 410 325 184 9 chrX 64143463 64144105 -98455825 + L2 LINE L2 2223 2976 -338 440 240 110 26 chrX 64144391 64144545 -98455385 + MIR SINE MIR 92 258 -4 290 328 57 8 chrX 64144898 64145020 -98454910 + MIR SINE MIR 109 236 -26 431 258 32 136 chrX 64145031 64145136 -98454794 - MIR SINE MIR -8 254 182 2406 103 0 0 chrX 64145136 64145446 -98454484 - AluSx SINE Alu -2 310 1 431 258 32 136 chrX 64145446 64145561 -98454369 - MIR SINE MIR -80 182 57 490 124 0 31 chrX 64145561 64145658 -98454272 - L1MB8 LINE L1 0 6178 6085 281 141 0 167 chrX 64146284 64146362 -98453568 - MER33 DNA MER1_type -1 362 298 2249 108 3 19 chrX 64146379 64146694 -98453236 - AluSq SINE Alu -3 310 1 1905 156 0 11 chrX 64146734 64147017 -98452913 - AluJb SINE Alu -23 289 10 1149 176 38 8 chrX 64147026 64147287 -98452643 - MER33 DNA MER1_type -54 270 2 14405 91 5 6 chrX 64147529 64150409 -98449521 - L1PA7 LINE L1 -5 6464 3583 2065 135 0 35 chrX 64150409 64150727 -98449203 - AluSq SINE Alu -6 307 1 14405 91 5 6 chrX 64150727 64151147 -98448783 - L1PA7 LINE L1 -2886 3583 3164 12497 110 4 26 chrX 64151144 64153133 -98446797 - L1PA7 LINE L1 -4474 1987 8 * 313 282 92 0 chrX 64153142 64153273 -98446657 - L1MC4a LINE L1 -1845 5963 5821 4245 63 0 0 chrX 64153273 64153828 -98446102 - L1PA7 LINE L1 -1 6153 5599 6713 63 11 1 chrX 64153828 64154987 -98444943 + L1PA7 LINE L1 4434 5606 -548 514 211 61 20 chrX 64155011 64155158 -98444772 - L1MC4a LINE L1 -2040 5768 5616 243 354 18 0 chrX 64155163 64155276 -98444654 - L2 LINE L2 -563 2751 2637 204 302 0 0 chrX 64155341 64155404 -98444526 - L2 LINE L2 -73 3199 3137 577 237 141 30 chrX 64155626 64155824 -98444106 + MIR SINE MIR 29 248 -14 653 282 41 0 chrX 64158140 64158310 -98441620 + MIR SINE MIR 29 205 -57 2486 102 42 7 chrX 64158310 64158477 -98441453 + L1MA2 LINE L1 5887 6047 -257 195 42 0 0 chrX 64158477 64158501 -98441429 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 2486 102 42 7 chrX 64158501 64158737 -98441193 + L1MA2 LINE L1 6047 6304 0 371 316 44 0 chrX 64158841 64158955 -98440975 + L2 LINE L2 3148 3266 -6 961 139 48 48 chrX 64159187 64159352 -98440578 + FRAM SINE Alu 1 164 -12 523 269 40 76 chrX 64159442 64159691 -98440239 + MIR SINE MIR 1 240 -22 456 330 104 5 chrX 64160624 64160836 -98439094 + MIR SINE MIR 20 252 -10 207 293 93 13 chrX 64160875 64160950 -98438980 + L2 LINE L2 3108 3188 -84 204 302 0 0 chrX 64161041 64161094 -98438836 + L3 LINE CR1 1523 1575 -2 7410 136 45 17 chrX 64162160 64163472 -98436458 + L1MC3 LINE L1 6437 7785 0 404 281 168 5 chrX 64163472 64163675 -98436255 + MIR SINE MIR 20 255 -7 335 242 0 0 chrX 64163700 64163792 -98436138 - MIR SINE MIR -58 150 58 775 255 51 31 chrX 64163932 64164187 -98435743 + MIR SINE MIR 3 262 0 2318 110 7 0 chrX 64164297 64164606 -98435324 + AluSx SINE Alu 1 311 -1 436 288 117 0 chrX 64164690 64164853 -98435077 - MIR3 SINE MIR -25 183 2 390 261 99 0 chrX 64165227 64165338 -98434592 + MER63 DNA MER1_type 3 750 -312 278 337 11 0 chrX 64165548 64165643 -98434287 - MIR SINE MIR -6 256 161 503 308 170 28 chrX 64165679 64166340 -98433590 - L2 LINE L2 0 3313 2552 241 309 85 21 chrX 64166327 64166421 -98433509 - MIR SINE MIR -143 119 20 * 194 152 0 0 chrX 64166581 64166614 -98433316 + L2 LINE L2 3185 3217 -96 637 303 87 24 chrX 64166815 64167047 -98432883 + MIR SINE MIR 3 244 -18 236 219 16 31 chrX 64167188 64167252 -98432678 + C-rich Low_complexity Low_complexity 1 63 0 223 188 16 31 chrX 64167578 64167642 -98432288 - MIR SINE MIR -65 143 81 220 246 92 0 chrX 64168183 64168248 -98431682 - L2 LINE L2 0 3313 3243 280 234 120 62 chrX 64168473 64168588 -98431342 - MIR SINE MIR -53 209 84 547 237 20 46 chrX 64168588 64168740 -98431190 + MIR SINE MIR 3 150 -112 252 257 171 0 chrX 64168793 64168863 -98431067 - MIR SINE MIR -155 107 26 542 258 95 37 chrX 64169208 64169398 -98430532 - L3b LINE CR1 -22 1561 1361 315 311 29 46 chrX 64169558 64169799 -98430131 + L2 LINE L2 2815 3051 -221 340 135 0 0 chrX 64169885 64169937 -98429993 - MER116 DNA Mariner -28 52 1 369 288 72 0 chrX 64170167 64170278 -98429652 - MIR SINE MIR -75 187 69 340 250 45 9 chrX 64170933 64171045 -98428885 - MER113 DNA MER1_type? -405 116 1 485 227 82 0 chrX 64171243 64171353 -98428577 + L2 LINE L2 3195 3313 0 246 274 96 22 chrX 64171365 64171500 -98428430 + MIR SINE MIR 118 262 0 280 289 134 14 chrX 64172220 64172362 -98427568 - MER5A DNA MER1_type 0 189 31 4841 154 22 17 chrX 64172379 64173355 -98426575 - L1MB7 LINE L1 -19 6165 5185 373 202 34 45 chrX 64173367 64173456 -98426474 - MIR3 SINE MIR -54 154 67 221 288 17 0 chrX 64174384 64174443 -98425487 + MIR3 SINE MIR 101 160 -48 286 239 0 0 chrX 64175055 64175122 -98424808 + MER34 LTR ERV1 1 67 -475 2181 151 60 27 chrX 64175192 64175642 -98424288 + LTR29 LTR ERV1 158 622 0 214 185 0 19 chrX 64176106 64176160 -98423770 - MIR SINE MIR -65 143 91 206 281 229 0 chrX 64177443 64177539 -98422391 + MIR SINE MIR 130 247 -15 2417 106 0 0 chrX 64177549 64177861 -98422069 - AluSx SINE Alu 0 312 1 2636 61 0 3 chrX 64177896 64178208 -98421722 - AluY SINE Alu 0 311 1 457 246 237 19 chrX 64178793 64179000 -98420930 - MIR SINE MIR 0 262 11 246 359 42 11 chrX 64179100 64179257 -98420673 - MIR SINE MIR -3 205 34 377 280 13 0 chrX 64179623 64179780 -98420150 + (TAGA)n Simple_repeat Simple_repeat 1 159 0 507 294 149 7 chrX 64179964 64180246 -98419684 - L3 LINE CR1 -38 1539 1218 229 263 25 25 chrX 64180498 64180578 -98419352 + (TCTCTG)n Simple_repeat Simple_repeat 5 84 0 577 355 30 4 chrX 64180810 64181075 -98418855 - L3 LINE CR1 -47 1530 1259 241 167 0 67 chrX 64181946 64182006 -98417924 - MIR SINE MIR -11 251 196 571 248 224 5 chrX 64182394 64182604 -98417326 + MIR SINE MIR 2 257 -5 304 348 42 0 chrX 64183593 64183711 -98416219 + MIR3 SINE MIR 33 155 -53 466 299 51 20 chrX 64184394 64184591 -98415339 + MIR SINE MIR 2 204 -58 1894 166 26 0 chrX 64184615 64184917 -98415013 - AluJb SINE Alu 0 312 3 1326 236 51 17 chrX 64184931 64185447 -98414483 + L2 LINE L2 2520 3052 -261 2255 119 0 3 chrX 64185585 64185895 -98414035 + AluSx SINE Alu 1 309 -3 379 254 110 0 chrX 64186034 64186152 -98413778 - MIR SINE MIR -56 206 76 186 292 163 35 chrX 64186597 64186799 -98413131 - L2 LINE L2 -268 3045 2818 456 340 57 5 chrX 64187325 64187558 -98412372 - MIR SINE MIR -13 249 8 283 193 0 10 chrX 64188285 64188358 -98411572 - MIR SINE MIR -29 179 108 1500 210 155 5 chrX 64188779 64189212 -98410718 - MLT1D LTR MaLR -7 498 1 1070 299 106 47 chrX 64189642 64190212 -98409718 + L3 LINE CR1 761 1385 -192 2445 102 0 0 chrX 64190212 64190516 -98409414 + AluSx SINE Alu 1 304 -8 1070 299 106 47 chrX 64190516 64190674 -98409256 + L3 LINE CR1 1385 1532 -45 627 276 22 33 chrX 64191769 64191950 -98407980 + L2 LINE L2 3135 3313 0 853 261 19 5 chrX 64192794 64193005 -98406925 + MIR SINE MIR 35 248 -14 644 228 154 0 chrX 64193049 64193198 -98406732 + MER5A DNA MER1_type 12 183 -6 389 302 183 20 chrX 64193340 64193542 -98406388 - MIR SINE MIR 0 262 28 1731 166 14 0 chrX 64193581 64194039 -98405891 + AluJb SINE Alu 1 462 0 372 301 98 18 chrX 64194866 64195029 -98404901 - MIR3 SINE MIR -22 186 11 213 320 78 19 chrX 64195532 64195635 -98404295 + MIR SINE MIR 37 145 -117 1532 218 2 48 chrX 64196292 64196686 -98403244 + L1ME3 LINE L1 5787 6162 0 301 243 27 108 chrX 64196715 64196900 -98403030 + L2 LINE L2 2969 3138 -175 422 296 30 0 chrX 64196925 64197063 -98402867 - MER63 DNA MER1_type -280 781 5 511 285 38 48 chrX 64197065 64197251 -98402679 + L2 LINE L2 3129 3312 -1 410 311 79 27 chrX 64197301 64197682 -98402248 - L2 LINE L2 -232 3040 2644 241 234 0 0 chrX 64197760 64197807 -98402123 - L3b LINE CR1 -248 1335 1289 524 268 0 7 chrX 64198552 64198690 -98401240 - MIR3 SINE MIR -27 181 45 738 71 0 0 chrX 64398869 64398967 -98200963 + AluSg/x SINE Alu 215 312 0 185 357 93 0 chrX 64399142 64399282 -98200648 - L2 LINE L2 -1241 2073 1921 1012 183 0 11 chrX 64399547 64399727 -98200203 + MER5B DNA MER1_type 1 178 0 227 275 8 42 chrX 64400103 64400223 -98199707 - L1MC4 LINE L1 -1 8041 7926 319 266 0 55 chrX 64400366 64400475 -98199455 - MIR SINE MIR -101 161 59 241 296 52 17 chrX 64401185 64401300 -98198630 - MIR SINE MIR -79 183 65 440 249 106 74 chrX 64401712 64401901 -98198029 - MIR SINE MIR -4 258 64 525 322 184 9 chrX 64403199 64403841 -98196089 + L2 LINE L2 2223 2976 -338 472 240 110 26 chrX 64404127 64404281 -98195649 + MIR SINE MIR 92 258 -4 306 328 57 8 chrX 64404634 64404756 -98195174 + MIR SINE MIR 109 236 -26 469 258 32 136 chrX 64404767 64404872 -98195058 - MIR SINE MIR -8 254 182 2389 103 0 0 chrX 64404872 64405182 -98194748 - AluSx SINE Alu -2 310 1 469 258 32 136 chrX 64405182 64405297 -98194633 - MIR SINE MIR -80 182 57 514 124 0 31 chrX 64405297 64405394 -98194536 - L1MB8 LINE L1 0 6178 6085 280 141 0 167 chrX 64406020 64406098 -98193832 - MER33 DNA MER1_type -1 323 259 2248 108 3 19 chrX 64406115 64406430 -98193500 - AluSq SINE Alu -3 310 1 1896 156 0 11 chrX 64406470 64406753 -98193177 - AluJb SINE Alu -23 289 10 1150 176 38 8 chrX 64406762 64407023 -98192907 - MER33 DNA MER1_type -54 270 2 17562 96 6 6 chrX 64407265 64410145 -98189785 - L1PA7 LINE L1 -5 6464 3582 2063 135 0 35 chrX 64410145 64410463 -98189467 - AluSq SINE Alu -6 307 1 17562 96 6 6 chrX 64410463 64410883 -98189047 - L1PA7 LINE L1 -2886 3583 3164 12310 111 5 26 chrX 64410883 64412867 -98187063 - L1PA7 LINE L1 -4477 1984 8 305 282 92 0 chrX 64412876 64413007 -98186923 - L1MC4a LINE L1 -1845 5963 5821 4470 63 0 0 chrX 64413007 64413562 -98186368 - L1PA7 LINE L1 -1 6153 5599 6740 63 11 1 chrX 64413562 64414721 -98185209 + L1PA7 LINE L1 4434 5606 -548 502 211 61 20 chrX 64414745 64414892 -98185038 - L1MC4a LINE L1 -2040 5768 5616 261 354 18 0 chrX 64414897 64415010 -98184920 - L2 LINE L2 -563 2751 2637 218 302 0 0 chrX 64415075 64415138 -98184792 - L2 LINE L2 -73 3199 3137 627 237 141 30 chrX 64415360 64415558 -98184372 + MIR SINE MIR 29 248 -14 181 324 0 15 chrX 64417783 64417851 -98182079 - L3b LINE CR1 -200 1383 1317 691 282 41 0 chrX 64417874 64418044 -98181886 + MIR SINE MIR 29 205 -57 2623 102 42 7 chrX 64418044 64418211 -98181719 + L1MA2 LINE L1 5887 6047 -257 195 42 0 0 chrX 64418211 64418235 -98181695 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 2623 102 42 7 chrX 64418235 64418471 -98181459 + L1MA2 LINE L1 6047 6304 0 399 316 44 0 chrX 64418575 64418689 -98181241 + L2 LINE L2 3148 3266 -6 960 139 48 48 chrX 64418921 64419086 -98180844 + FRAM SINE Alu 1 164 -12 573 261 40 76 chrX 64419176 64419425 -98180505 + MIR SINE MIR 1 240 -22 491 330 104 5 chrX 64420358 64420570 -98179360 + MIR SINE MIR 20 252 -10 236 314 65 32 chrX 64420609 64420733 -98179197 + L2 LINE L2 3108 3235 -37 214 302 0 0 chrX 64420775 64420828 -98179102 + L3 LINE CR1 1523 1575 -2 7384 136 45 17 chrX 64421894 64423206 -98176724 + L1MC3 LINE L1 6437 7785 0 447 276 168 5 chrX 64423206 64423409 -98176521 + MIR SINE MIR 20 255 -7 357 242 0 0 chrX 64423434 64423526 -98176404 - MIR SINE MIR -58 150 58 842 255 51 31 chrX 64423666 64423921 -98176009 + MIR SINE MIR 3 262 0 2313 110 7 0 chrX 64424031 64424340 -98175590 + AluSx SINE Alu 1 311 -1 482 288 117 0 chrX 64424424 64424587 -98175343 - MIR3 SINE MIR -25 183 2 360 268 10 0 chrX 64424975 64425072 -98174858 + MER63 DNA MER1_type 27 750 -312 290 337 11 0 chrX 64425282 64425377 -98174553 - MIR SINE MIR -6 256 161 582 307 170 28 chrX 64425413 64426074 -98173856 - L2 LINE L2 0 3313 2552 265 313 81 20 chrX 64426061 64426160 -98173770 - MIR SINE MIR -143 119 15 * 210 237 169 0 chrX 64426315 64426374 -98173556 + L2 LINE L2 3185 3253 -60 677 303 87 24 chrX 64426549 64426781 -98173149 + MIR SINE MIR 3 244 -18 236 219 16 31 chrX 64426922 64426986 -98172944 + C-rich Low_complexity Low_complexity 1 63 0 241 188 16 31 chrX 64427312 64427376 -98172554 - MIR SINE MIR -65 143 81 235 303 91 30 chrX 64427917 64428049 -98171881 - L2 LINE L2 0 3272 3133 319 234 120 62 chrX 64428207 64428322 -98171608 - MIR SINE MIR -53 209 84 592 230 20 46 chrX 64428322 64428474 -98171456 + MIR SINE MIR 3 150 -112 273 257 171 0 chrX 64428527 64428597 -98171333 - MIR SINE MIR -155 107 26 575 258 95 37 chrX 64428942 64429132 -98170798 - L3b LINE CR1 -22 1561 1361 346 321 25 51 chrX 64429292 64429566 -98170364 + L2 LINE L2 2815 3081 -191 341 135 0 0 chrX 64429619 64429671 -98170259 - MER116 DNA Mariner -28 52 1 392 288 72 0 chrX 64429901 64430012 -98169918 - MIR SINE MIR -75 187 69 332 250 45 9 chrX 64430667 64430779 -98169151 - MER113 DNA MER1_type? -405 116 1 516 227 82 0 chrX 64430977 64431087 -98168843 + L2 LINE L2 3195 3313 0 275 267 96 22 chrX 64431099 64431234 -98168696 + MIR SINE MIR 118 262 0 313 289 134 14 chrX 64431954 64432096 -98167834 - MER5A DNA MER1_type 0 189 31 4803 153 23 17 chrX 64432113 64433088 -98166842 - L1MB7 LINE L1 -19 6165 5185 369 222 74 0 chrX 64433100 64433181 -98166749 - MIR3 SINE MIR -54 154 68 237 288 17 0 chrX 64434095 64434154 -98165776 + MIR3 SINE MIR 101 160 -48 280 239 0 0 chrX 64434762 64434829 -98165101 + MER34 LTR ERV1 1 67 -475 2163 149 60 27 chrX 64434899 64435349 -98164581 + LTR29 LTR ERV1 158 622 0 229 155 0 53 chrX 64435804 64435866 -98164064 - MIR SINE MIR -65 143 91 219 281 229 0 chrX 64437112 64437208 -98162722 + MIR SINE MIR 130 247 -15 2402 106 0 0 chrX 64437218 64437530 -98162400 - AluSx SINE Alu 0 312 1 2625 61 0 3 chrX 64437565 64437877 -98162053 - AluY SINE Alu 0 311 1 505 237 241 24 chrX 64438462 64438669 -98161261 - MIR SINE MIR 0 262 11 367 272 13 6 chrX 64439419 64439577 -98160353 + (TAGA)n Simple_repeat Simple_repeat 1 159 0 544 294 149 7 chrX 64439761 64440043 -98159887 - L3 LINE CR1 -38 1539 1218 229 263 25 25 chrX 64440294 64440374 -98159556 + (TCTCTG)n Simple_repeat Simple_repeat 5 84 0 607 355 30 4 chrX 64440606 64440871 -98159059 - L3 LINE CR1 -47 1530 1259 258 167 0 67 chrX 64441742 64441802 -98158128 - MIR SINE MIR -11 251 196 622 252 224 5 chrX 64442190 64442400 -98157530 + MIR SINE MIR 2 257 -5 330 348 42 0 chrX 64443389 64443507 -98156423 + MIR3 SINE MIR 33 155 -53 182 225 127 56 chrX 64443988 64444059 -98155871 - MIR SINE MIR -70 192 117 504 276 99 23 chrX 64444190 64444411 -98155519 + MIR SINE MIR 2 239 -23 1881 166 26 0 chrX 64444411 64444713 -98155217 - AluJb SINE Alu 0 312 3 1456 234 51 17 chrX 64444727 64445242 -98154688 + L2 LINE L2 2520 3052 -261 2241 119 0 3 chrX 64445381 64445691 -98154239 + AluSx SINE Alu 1 309 -3 401 254 110 0 chrX 64445830 64445948 -98153982 - MIR SINE MIR -56 206 76 237 292 163 35 chrX 64446393 64446595 -98153335 - L2 LINE L2 -268 3045 2818 485 323 65 14 chrX 64447121 64447354 -98152576 - MIR SINE MIR -13 249 8 293 191 118 59 chrX 64448066 64448218 -98151712 - MIR SINE MIR -23 185 21 185 318 116 16 chrX 64448396 64448525 -98151405 + L2 LINE L2 2956 3097 -175 1444 213 155 5 chrX 64448575 64449008 -98150922 - MLT1D LTR MaLR -7 498 1 1190 296 106 47 chrX 64449438 64450008 -98149922 + L3 LINE CR1 761 1385 -192 2394 102 7 0 chrX 64450008 64450312 -98149618 + AluSx SINE Alu 1 306 -6 1190 296 106 47 chrX 64450312 64450470 -98149460 + L3 LINE CR1 1385 1532 -45 660 276 22 33 chrX 64451496 64451677 -98148253 + L2 LINE L2 3135 3313 0 900 246 24 9 chrX 64452521 64452732 -98147198 + MIR SINE MIR 35 248 -14 683 213 129 0 chrX 64452768 64452925 -98147005 + MER5A DNA MER1_type 4 183 -6 426 292 183 20 chrX 64453067 64453269 -98146661 - MIR SINE MIR 0 262 28 1717 166 14 0 chrX 64453308 64453766 -98146164 + AluJb SINE Alu 1 462 0 405 301 98 18 chrX 64454593 64454756 -98145174 - MIR3 SINE MIR -22 186 11 235 325 79 18 chrX 64455248 64455362 -98144568 + MIR SINE MIR 25 145 -117 1498 218 2 48 chrX 64456019 64456413 -98143517 + L1ME3 LINE L1 5787 6162 0 337 243 27 108 chrX 64456442 64456627 -98143303 + L2 LINE L2 2969 3138 -175 408 289 0 0 chrX 64456652 64456749 -98143181 - MER63 DNA MER1_type -54 782 686 540 275 39 51 chrX 64456800 64456978 -98142952 + L2 LINE L2 3137 3312 -1 469 312 78 26 chrX 64457028 64457409 -98142521 - L2 LINE L2 -232 3040 2644 254 234 0 0 chrX 64457487 64457534 -98142396 - L3b LINE CR1 -248 1335 1289 558 268 0 7 chrX 64458279 64458417 -98141513 - MIR3 SINE MIR -27 181 45 955 217 137 0 chrX 64458792 64459018 -98140912 - MIR SINE MIR -1 261 5 661 241 0 59 chrX 64459038 64459208 -98140722 - MIR SINE MIR 0 262 103 356 296 162 34 chrX 64459670 64459849 -98140081 - MIR3 SINE MIR -3 205 4 1205 181 39 8 chrX 64459898 64460152 -98139778 + L1MDa LINE L1 1788 2049 -4491 265 246 85 60 chrX 64460316 64460447 -98139483 + MIR SINE MIR 12 150 -86 244 221 68 189 chrX 64461035 64461225 -98138705 + MIR3 SINE MIR 36 202 -6 222 313 47 0 chrX 64461343 64461407 -98138523 + MIR SINE MIR 48 114 -148 222 118 0 0 chrX 64462542 64462576 -98137354 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 229 316 61 35 chrX 64462696 64462810 -98137120 - MIR3 SINE MIR -3 205 89 355 276 154 6 chrX 64463429 64463585 -98136345 + MIR3 SINE MIR 30 208 0 256 315 65 9 chrX 64464407 64464515 -98135415 - MIR SINE MIR -70 192 79 1917 153 47 3 chrX 64464997 64465357 -98134573 + L1MA6 LINE L1 5925 6300 0 215 211 0 66 chrX 64465360 64465436 -98134494 + GA-rich Low_complexity Low_complexity 2 72 0 658 249 12 18 chrX 64465741 64465910 -98134020 + MIR SINE MIR 95 262 0 193 287 37 37 chrX 64465905 64466013 -98133917 - L2 LINE L2 -1084 2230 2123 * 608 255 181 5 chrX 64467019 64467223 -98132707 - MIR SINE MIR -14 248 9 425 302 70 0 chrX 64467512 64467641 -98132289 + MIR SINE MIR 70 207 -55 344 218 0 64 chrX 64467909 64468019 -98131911 + L1ME LINE L1 5691 5793 -328 392 237 59 113 chrX 64468660 64469010 -98130920 + L1MEd LINE L1 694 1010 -5119 333 273 61 15 chrX 64469036 64469168 -98130762 + L1MEd LINE L1 1064 1201 -4918 358 381 38 6 chrX 64469174 64469334 -98130596 + HAL1 LINE L1 1316 1480 -1027 333 329 79 33 chrX 64469754 64469906 -98130024 + MIR SINE MIR 25 183 -79 416 253 117 12 chrX 64470028 64470190 -98129740 - MIR SINE MIR -71 191 13 258 32 0 0 chrX 64470230 64470261 -98129669 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 563 316 36 0 chrX 64470460 64470628 -98129302 + MIR SINE MIR 48 221 -41 436 235 118 8 chrX 64470863 64470982 -98128948 - L2 LINE L2 0 3313 3182 958 269 0 18 chrX 64471177 64471404 -98128526 + MIR SINE MIR 23 245 -17 219 114 0 0 chrX 64471420 64471455 -98128475 + (TTA)n Simple_repeat Simple_repeat 1 35 0 477 268 38 56 chrX 64471659 64471872 -98128058 + L2 LINE L2 2995 3203 -110 180 301 41 14 chrX 64471978 64472051 -98127879 + MIR3 SINE MIR 114 188 -20 540 266 0 43 chrX 64472706 64472845 -98127085 - L2 LINE L2 0 3313 3181 386 300 170 7 chrX 64472878 64473161 -98126769 - L2 LINE L2 -1052 2262 1934 236 297 27 0 chrX 64473268 64473342 -98126588 - MIR SINE MIR -6 256 181 640 304 84 71 chrX 64473359 64473678 -98126252 - L2 LINE L2 -54 3218 2905 2626 50 0 0 chrX 64473678 64473979 -98125951 + AluY SINE Alu 1 301 -10 640 304 84 71 chrX 64473979 64474354 -98125576 - L2 LINE L2 -367 2905 2528 401 271 55 6 chrX 64474395 64474576 -98125354 + L1MC4a LINE L1 5752 5941 -1867 428 255 138 21 chrX 64474774 64474962 -98124968 - L2 LINE L2 -780 2534 2325 325 316 17 29 chrX 64474968 64475142 -98124788 - L2 LINE L2 -1514 1800 1629 459 208 124 3 chrX 64475148 64475274 -98124656 - MIR SINE MIR -63 145 30 986 115 106 101 chrX 64475386 64475604 -98124326 + MER20 DNA MER1_type 1 219 0 737 263 69 12 chrX 64476136 64476383 -98123547 - L1ME LINE L1 -347 5774 5514 1928 146 10 17 chrX 64476399 64476694 -98123236 + AluSx SINE Alu 1 293 -19 283 278 210 34 chrX 64476863 64477306 -98122624 + L2 LINE L2 2456 2976 -338 324 207 37 89 chrX 64477698 64477833 -98122097 + LTR67 LTR ERVL 428 555 -2 246 319 49 71 chrX 64478176 64478402 -98121528 - L2 LINE L2 -585 2729 2509 205 276 15 104 chrX 64478826 64478960 -98120970 - L2 LINE L2 -54 3218 3097 465 345 60 62 chrX 64479303 64479688 -98120242 - L2 LINE L2 -52 3220 2837 477 284 13 39 chrX 64479880 64480035 -98119895 - MIR3 SINE MIR -7 201 51 624 283 52 9 chrX 64480880 64481102 -98118828 + MIR SINE MIR 19 255 -7 309 214 0 45 chrX 64482062 64482151 -98117779 - LTR67 LTR ERVL -15 542 458 391 309 105 31 chrX 64482271 64482438 -98117492 + L1MC4a LINE L1 5526 5679 -2129 2137 159 47 16 chrX 64482438 64482822 -98117108 - MSTD LTR MaLR 0 396 1 391 309 105 31 chrX 64482822 64483072 -98116858 + L1MC4a LINE L1 5679 5974 -1834 2127 110 3 0 chrX 64484628 64484946 -98114984 + AluSx SINE Alu 1 319 0 1226 266 72 46 chrX 64485084 64485742 -98114188 - L1ME2 LINE L1 -226 5938 5254 353 157 0 0 chrX 64485764 64485827 -98114103 - FLAM_A SINE Alu -18 115 63 368 297 30 55 chrX 64485861 64486063 -98113867 - L1ME LINE L1 -941 5205 5009 559 220 64 57 chrX 64486074 64486450 -98113480 + L1ME LINE L1 5212 5580 -586 467 252 0 31 chrX 64486500 64486627 -98113303 + MLT1F1 LTR MaLR 26 148 -445 4696 199 71 27 chrX 64486629 64487112 -98112818 + L1MCa LINE L1 1801 2261 -4165 1968 141 10 7 chrX 64487112 64487409 -98112521 + AluJo SINE Alu 3 300 -12 2232 98 30 7 chrX 64487410 64487707 -98112223 + AluSx SINE Alu 1 304 -8 4696 199 71 27 chrX 64487707 64489029 -98110901 + L1MCa LINE L1 2260 3684 -2742 557 246 63 63 chrX 64489032 64489239 -98110691 + MLT1F1 LTR MaLR 98 304 -263 255 61 0 0 chrX 64489568 64489601 -98110329 + (TA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chrX 64489825 64489848 -98110082 + AT_rich Low_complexity Low_complexity 1 23 0 2050 149 3 3 chrX 64489887 64490182 -98109748 + AluSx SINE Alu 1 295 -17 262 317 19 29 chrX 64490193 64490401 -98109529 - L1M4 LINE L1 -3515 2631 2426 305 225 79 11 chrX 64490406 64490490 -98109440 - L1MC4a LINE L1 -1905 5903 5813 2012 147 10 7 chrX 64490490 64490796 -98109134 - AluJb SINE Alu -2 310 4 895 183 0 0 chrX 64491050 64491192 -98108738 - FRAM SINE Alu -26 150 9 199 219 0 27 chrX 64491297 64491370 -98108560 + CT-rich Low_complexity Low_complexity 2 72 0 23 0 0 0 chrX 64492138 64492161 -98107769 + AT_rich Low_complexity Low_complexity 1 23 0 182 208 19 0 chrX 64492803 64492856 -98107074 + CT-rich Low_complexity Low_complexity 4 57 0 361 324 128 36 chrX 64497333 64497552 -98102378 + L1MC4a LINE L1 2155 2393 -4003 249 57 0 0 chrX 64497643 64497678 -98102252 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 222 279 0 0 chrX 64497819 64497880 -98102050 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 860 289 77 25 chrX 64497927 64498332 -98101598 - L1MC4a LINE L1 -1900 5908 5483 321 328 46 38 chrX 64498334 64498572 -98101358 + L1MC4a LINE L1 5457 5696 -494 254 297 155 30 chrX 64498589 64498821 -98101109 + L1MC4a LINE L1 5861 6121 -1756 449 189 90 18 chrX 64499005 64499116 -98100814 - ERVL LTR ERVL -381 5383 5265 411 276 16 16 chrX 64499731 64499854 -98100076 + LTR67 LTR ERVL 435 557 0 267 310 64 47 chrX 64500068 64500239 -98099691 - ERVL LTR ERVL -953 4811 4638 2231 81 0 34 chrX 64500379 64500700 -98099230 + AluSg SINE Alu 1 310 0 287 261 126 17 chrX 64502114 64502233 -98097697 - L2 LINE L2 -5 3267 3136 736 347 37 3 chrX 64502415 64502767 -98097163 + L1MC4a LINE L1 5537 5900 -1908 318 253 40 50 chrX 64502907 64503006 -98096924 - L1M4 LINE L1 -2966 3180 3083 440 35 17 0 chrX 64503120 64503178 -98096752 + (TG)n Simple_repeat Simple_repeat 1 59 0 378 282 75 23 chrX 64503429 64503603 -98096327 + L1ME4a LINE L1 5911 6093 -28 457 320 46 16 chrX 64503757 64503951 -98095979 + MIR SINE MIR 2 201 -61 180 0 0 0 chrX 64504049 64504069 -98095861 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 386 264 168 0 chrX 64504997 64505152 -98094778 + MIR SINE MIR 70 250 -12 240 275 38 12 chrX 64505441 64505521 -98094409 - MIR SINE MIR -34 228 147 598 198 174 17 chrX 64505534 64505706 -98094224 + MIR SINE MIR 45 243 -19 374 273 11 0 chrX 64505728 64505816 -98094114 - MIR SINE MIR -78 130 42 22 0 0 0 chrX 64506066 64506088 -98093842 + AT_rich Low_complexity Low_complexity 1 22 0 678 221 25 19 chrX 64506102 64506260 -98093670 - MIR SINE MIR -41 221 63 1088 54 0 0 chrX 64506262 64506392 -98093538 - AluSq/x SINE Alu -183 130 1 449 307 0 0 chrX 64506475 64506589 -98093341 + L2 LINE L2 3200 3313 0 428 268 108 57 chrX 64506591 64506923 -98093007 - L2 LINE L2 -715 2599 2251 349 330 0 0 chrX 64507333 64507430 -98092500 + G-rich Low_complexity Low_complexity 2 98 0 261 298 220 23 chrX 64508092 64508310 -98091620 - MIR SINE MIR 0 262 2 2104 103 3 10 chrX 64508368 64508670 -98091260 + AluSx SINE Alu 1 300 -12 887 222 43 10 chrX 64508836 64509043 -98090887 + MIR SINE MIR 13 226 -36 545 254 58 23 chrX 64509106 64509279 -98090651 + MIR SINE MIR 8 186 -76 21 0 0 0 chrX 64509329 64509350 -98090580 + AT_rich Low_complexity Low_complexity 1 21 0 341 284 0 46 chrX 64509674 64509783 -98090147 - MIR SINE MIR -81 181 78 1935 146 0 13 chrX 64509958 64510274 -98089656 + AluJb SINE Alu 1 312 0 314 327 123 31 chrX 64511099 64511261 -98088669 - MIR3 SINE MIR -16 192 16 1628 173 35 6 chrX 64511359 64511672 -98088258 + MER33 DNA MER1_type 1 322 -2 690 232 149 6 chrX 64512010 64512191 -98087739 + MIR SINE MIR 56 262 0 354 80 0 0 chrX 64513181 64513208 -98086722 + (TG)n Simple_repeat Simple_repeat 1 77 0 354 80 0 0 chrX 64513208 64513258 -98086672 + (TG)n Simple_repeat Simple_repeat 1 50 0 326 270 88 38 chrX 64514116 64514275 -98085655 + MIR3 SINE MIR 21 187 -21 306 293 41 41 chrX 64516930 64517077 -98082853 + MIR3 SINE MIR 16 162 -46 2331 94 0 0 chrX 64517086 64517393 -98082537 + AluSx SINE Alu 1 307 -5 423 229 9 18 chrX 64518523 64518632 -98081298 + MIR3 SINE MIR 99 206 -2 2152 100 7 0 chrX 64518672 64518963 -98080967 + AluSx SINE Alu 1 293 -19 34 24 0 0 chrX 64519453 64519494 -98080436 + AT_rich Low_complexity Low_complexity 1 41 0 366 331 0 84 chrX 64519587 64519765 -98080165 + MIR3 SINE MIR 46 208 0 453 163 22 11 chrX 64519894 64519986 -98079944 - MIR SINE MIR -92 116 24 323 266 110 19 chrX 64520289 64520443 -98079487 + MIR SINE MIR 40 207 -55 21 0 0 0 chrX 64521009 64521030 -98078900 + GC_rich Low_complexity Low_complexity 1 21 0 602 224 233 4 chrX 64521796 64522013 -98077917 - MIR SINE MIR 0 262 1 528 318 25 32 chrX 64522030 64522264 -98077666 - MIR SINE MIR -27 235 2 293 333 61 0 chrX 64522306 64522438 -98077492 - MIR SINE MIR -13 249 110 213 250 79 0 chrX 64522594 64522670 -98077260 + MIR SINE MIR 53 134 -74 263 286 12 12 chrX 64522904 64522988 -98076942 - L3 LINE CR1 -343 1234 1151 537 263 34 51 chrX 64523011 64523186 -98076744 + MIR SINE MIR 20 191 -71 666 240 21 52 chrX 64523418 64523610 -98076320 - MIR SINE MIR 0 262 77 467 357 150 33 chrX 64523732 64524744 -98075186 - L2 LINE L2 -474 2840 1710 266 313 141 0 chrX 64525768 64525896 -98074034 - L2 LINE L2 -2 3270 3125 332 222 37 0 chrX 64526335 64526416 -98073514 + MIR SINE MIR 123 206 -56 193 345 0 35 chrX 64526476 64526563 -98073367 + L2 LINE L2 3005 3088 -184 347 105 18 0 chrX 64527308 64527365 -98072565 + (GA)n Simple_repeat Simple_repeat 2 59 0 423 315 0 28 chrX 64527791 64527934 -98071996 - MIR3 SINE MIR -47 161 23 232 237 0 34 chrX 64528605 64528664 -98071266 - MIR SINE MIR -61 147 91 183 80 0 0 chrX 64529274 64529299 -98070631 + (CCG)n Simple_repeat Simple_repeat 3 27 0 2381 118 25 0 chrX 64529806 64530163 -98069767 - MER47A DNA MER2_type 0 366 1 821 246 8 65 chrX 64530163 64530423 -98069507 + MIR SINE MIR 5 249 -13 310 271 120 24 chrX 64530388 64530592 -98069338 - MIR SINE MIR 0 262 31 * 389 304 53 12 chrX 64531583 64531754 -98068176 + MIR SINE MIR 37 214 -48 1761 133 0 50 chrX 64531946 64532263 -98067667 - AluJb SINE Alu -1 311 11 2271 84 7 0 chrX 64533154 64533451 -98066479 - AluSx SINE Alu -13 299 1 831 174 8 0 chrX 64533525 64533657 -98066273 + FLAM_A SINE Alu 1 133 0 418 266 56 0 chrX 64533662 64533805 -98066125 - L1MC4a LINE L1 -1933 5875 5725 280 197 33 0 chrX 64534870 64534931 -98064999 + MIR SINE MIR 99 161 -101 223 365 0 12 chrX 64535245 64535330 -98064600 + (CA)n Simple_repeat Simple_repeat 2 85 0 198 306 122 10 chrX 64535601 64535699 -98064231 + L2 LINE L2 3141 3249 -23 488 223 77 0 chrX 64535738 64535868 -98064062 - MIR SINE MIR -74 188 49 449 292 8 17 chrX 64537645 64537820 -98062110 + MIR SINE MIR 34 203 -59 398 260 29 98 chrX 64538049 64538222 -98061708 + MIR3 SINE MIR 40 200 -8 606 265 26 52 chrX 64539405 64539635 -98060295 + MIR SINE MIR 11 234 -28 296 347 11 0 chrX 64539987 64540082 -98059848 - L3b LINE CR1 -220 1363 1268 198 324 9 67 chrX 64540443 64540548 -98059382 - L2 LINE L2 -74 3239 3141 189 333 135 0 chrX 64540956 64541067 -98058863 - MIR SINE MIR -15 247 122 366 100 0 0 chrX 64541748 64541808 -98058122 + (TG)n Simple_repeat Simple_repeat 2 61 0 196 300 11 56 chrX 64542071 64542161 -98057769 - L3 LINE CR1 -125 1452 1367 684 218 16 36 chrX 64542166 64542359 -98057571 + L1MC5 LINE L1 7747 7935 -26 315 296 87 9 chrX 64542394 64542509 -98057421 - L3 LINE CR1 -203 1374 1251 * 359 293 142 24 chrX 64542505 64542710 -98057220 + MIR SINE MIR 15 243 -19 2416 303 109 12 chrX 64542771 64543814 -98056116 - L3 LINE CR1 -364 1213 70 250 312 18 121 chrX 64543862 64544202 -98055728 - L2 LINE L2 -47 3225 2921 887 311 20 0 chrX 64544245 64544496 -98055434 - MIR SINE MIR -1 261 6 269 297 0 0 chrX 64545333 64545407 -98054523 + (TG)n Simple_repeat Simple_repeat 2 75 0 590 215 64 99 chrX 64545777 64545888 -98054042 - MER112 DNA MER1_type 0 260 160 1715 150 38 14 chrX 64545888 64546181 -98053749 + AluJo SINE Alu 1 300 -12 590 215 64 99 chrX 64546181 64546302 -98053628 - MER112 DNA MER1_type -100 160 36 303 244 0 33 chrX 64546374 64546464 -98053466 + MIR SINE MIR 64 150 -58 284 353 77 18 chrX 64546970 64547140 -98052790 + MIR SINE MIR 16 195 -67 229 314 0 68 chrX 64548197 64548315 -98051615 + MIR SINE MIR 97 206 -56 188 0 74 0 chrX 64548431 64548458 -98051472 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 293 299 47 9 chrX 64548885 64548992 -98050938 + MIR3 SINE MIR 86 196 -12 570 145 11 28 chrX 64549263 64549393 -98050537 + MIR SINE MIR 45 172 -62 180 179 0 0 chrX 64549674 64549713 -98050217 + GA-rich Low_complexity Low_complexity 2 40 0 197 226 21 0 chrX 64549800 64549893 -98050037 + (CAGAGA)n Simple_repeat Simple_repeat 6 100 0 272 259 22 44 chrX 64549906 64550041 -98049889 + (CAGAGA)n Simple_repeat Simple_repeat 1 132 0 276 130 0 0 chrX 64550044 64550090 -98049840 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 293 306 7 62 chrX 64551052 64551196 -98048734 + L3 LINE CR1 1147 1282 -295 301 293 26 9 chrX 64551343 64551459 -98048471 + L3 LINE CR1 1297 1414 -163 194 196 39 0 chrX 64551612 64551663 -98048267 + MIR SINE MIR 81 133 -75 349 219 76 19 chrX 64551924 64552029 -98047901 + L3 LINE CR1 1398 1508 -69 417 39 0 0 chrX 64552258 64552309 -98047621 + (TG)n Simple_repeat Simple_repeat 1 51 0 724 195 31 152 chrX 64553325 64553581 -98046349 - MIR SINE MIR -36 226 2 323 350 115 16 chrX 64553724 64553907 -98046023 + MIR SINE MIR 14 214 -48 229 247 47 35 chrX 64554124 64554209 -98045721 + L2 LINE L2 3219 3304 -9 212 294 128 18 chrX 64554199 64554308 -98045622 - L2 LINE L2 -8 3264 3144 * 311 115 19 0 chrX 64554408 64554460 -98045470 - L2 LINE L2 -2 3311 3259 667 291 101 3 chrX 64555015 64555331 -98044599 - L2 LINE L2 -942 2372 2026 319 300 108 0 chrX 64555447 64555577 -98044353 - MER5A DNA MER1_type -37 152 9 519 107 0 0 chrX 64555691 64555775 -98044155 + (CA)n Simple_repeat Simple_repeat 2 85 0 533 291 20 7 chrX 64556235 64556383 -98043547 + MIR3 SINE MIR 41 190 -18 417 281 78 0 chrX 64556463 64556591 -98043339 - MIR SINE MIR -8 254 117 206 286 53 38 chrX 64557542 64557555 -98042375 + MIR3 SINE MIR 45 56 -152 2248 82 14 0 chrX 64557555 64557847 -98042083 + AluSg SINE Alu 2 297 -13 206 286 53 38 chrX 64557847 64557966 -98041964 + MIR3 SINE MIR 56 179 -29 208 384 45 17 chrX 64558115 64558292 -98041638 + L2 LINE L2 2894 3075 -197 373 182 10 88 chrX 64558511 64558607 -98041323 + MIR3 SINE MIR 48 134 -74 775 252 141 30 chrX 64558607 64558841 -98041089 + MIR SINE MIR 3 262 0 384 317 30 42 chrX 64559115 64559282 -98040648 - MIR SINE MIR -65 197 33 286 252 206 0 chrX 64560354 64560485 -98039445 - MIR SINE MIR -38 224 67 291 85 0 0 chrX 64560929 64560976 -98038954 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 254 279 0 0 chrX 64561492 64561553 -98038377 + ORSL DNA AcHobo 202 262 -13 549 285 12 23 chrX 64561666 64561838 -98038092 - MIR SINE MIR -43 219 50 982 185 32 0 chrX 64561963 64562152 -98037778 + MIR SINE MIR 58 252 -10 201 74 0 0 chrX 64562155 64562182 -98037748 + (TTA)n Simple_repeat Simple_repeat 3 29 0 283 337 0 0 chrX 64562811 64562912 -98037018 - MIR SINE MIR -78 130 30 1571 277 102 21 chrX 64563048 64563755 -98036175 + L2 LINE L2 204 967 -2347 1906 284 145 23 chrX 64563755 64565137 -98034793 + L2 LINE L2 1710 3313 0 584 246 73 17 chrX 64565719 64565898 -98034032 + MIR SINE MIR 68 256 -6 264 401 30 8 chrX 64566209 64566341 -98033589 + MIR SINE MIR 20 154 -108 1544 177 3 21 chrX 64566842 64567168 -98032762 - AluJo SINE Alu 0 321 1 194 344 47 0 chrX 64567892 64567956 -98031974 - L2 LINE L2 -59 3213 3147 303 150 163 0 chrX 64568049 64568129 -98031801 - MIR SINE MIR -74 134 42 217 313 81 0 chrX 64569415 64569514 -98030416 - MIR SINE MIR -60 148 42 347 353 0 0 chrX 64570662 64570781 -98029149 - MIR SINE MIR -55 153 35 184 397 24 16 chrX 64570961 64571087 -98028843 + L3b LINE CR1 1110 1236 -347 242 269 77 77 chrX 64571332 64571514 -98028416 - MIR SINE MIR -68 194 13 211 346 96 7 chrX 64571590 64571726 -98028204 - L3b LINE CR1 -140 1443 1296 203 138 0 0 chrX 64571726 64571755 -98028175 + (GGA)n Simple_repeat Simple_repeat 1 29 0 1612 183 3 3 chrX 64571840 64572146 -98027784 - AluJo SINE Alu -6 306 1 430 299 51 0 chrX 64572162 64572299 -98027631 - MIR SINE MIR -71 191 48 180 152 0 0 chrX 64572862 64572895 -98027035 + G-rich Low_complexity Low_complexity 6 38 0 336 94 0 0 chrX 64572968 64573021 -98026909 + (GA)n Simple_repeat Simple_repeat 2 54 0 192 77 0 0 chrX 64573101 64573127 -98026803 + (GAA)n Simple_repeat Simple_repeat 2 27 0 240 86 0 0 chrX 64574320 64574355 -98025575 + (CTGGGG)n Simple_repeat Simple_repeat 5 39 0 246 105 0 0 chrX 64574410 64574448 -98025482 + (GGA)n Simple_repeat Simple_repeat 1 38 0 257 278 244 0 chrX 64624890 64624980 -97974950 - MIR SINE MIR -65 143 32 565 234 30 42 chrX 64625200 64625367 -97974563 + MIR3 SINE MIR 38 202 -6 231 103 0 0 chrX 64626070 64626109 -97973821 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 654 151 104 0 chrX 64626110 64626216 -97973714 - AluJb SINE Alu -194 118 2 402 273 53 0 chrX 64626240 64626372 -97973558 - MIR SINE MIR -111 151 13 399 289 124 24 chrX 64626391 64626447 -97973483 - MIR SINE MIR 0 262 213 189 0 0 0 chrX 64626447 64626468 -97973462 + (TA)n Simple_repeat Simple_repeat 2 22 0 399 289 124 24 chrX 64626468 64626620 -97973310 - MIR SINE MIR -49 213 30 361 219 17 92 chrX 64626750 64626869 -97973061 + MIR3 SINE MIR 81 190 -18 237 230 195 18 chrX 64627425 64627538 -97972392 + MIR SINE MIR 117 249 -13 285 328 109 6 chrX 64627542 64627716 -97972214 + MIR SINE MIR 60 251 -11 705 261 11 59 chrX 64627796 64628068 -97971862 + L1M4 LINE L1 3570 3828 -2318 * 4860 215 47 30 chrX 64628067 64628569 -97971361 + L1M4 LINE L1 3180 3672 -2474 361 36 36 0 chrX 64628569 64628624 -97971306 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 4860 215 47 30 chrX 64628624 64629476 -97970454 + L1M4 LINE L1 3672 4557 -1589 550 243 286 30 chrX 64629579 64629974 -97969956 - L2 LINE L2 -358 2956 2461 905 261 126 32 chrX 64630030 64630582 -97969348 + L2 LINE L2 2617 3220 -93 412 303 0 0 chrX 64630672 64630781 -97969149 - MIR SINE MIR -49 213 105 504 32 0 0 chrX 64630834 64630896 -97969034 + (CA)n Simple_repeat Simple_repeat 1 62 0 451 271 30 42 chrX 64631056 64631222 -97968708 + MIR SINE MIR 20 183 -79 503 173 9 0 chrX 64631351 64631461 -97968469 + (TCCA)n Simple_repeat Simple_repeat 2 112 0 246 322 11 11 chrX 64631464 64631551 -97968379 - L2 LINE L2 0 3272 3186 481 289 91 45 chrX 64631818 64632126 -97967804 - L2 LINE L2 -563 2751 2430 310 138 46 11 chrX 64632408 64632495 -97967435 + CT-rich Low_complexity Low_complexity 2 91 0 201 129 0 0 chrX 64632564 64632595 -97967335 + (TG)n Simple_repeat Simple_repeat 2 32 0 10075 50 0 1 chrX 64632711 64634661 -97965269 + L1PA6 LINE L1 4205 6153 -1 230 37 0 0 chrX 64634667 64634694 -97965236 - L1MC/D LINE L1 -645 5714 5688 280 381 8 0 chrX 64634977 64635095 -97964835 - L2 LINE L2 -237 3035 2917 238 286 0 66 chrX 64635207 64635298 -97964632 + L1MC/D LINE L1 5589 5673 -2135 1901 137 77 15 chrX 64635492 64635731 -97964199 + L1MD3 LINE L1 6637 6904 -1091 261 57 0 0 chrX 64635731 64635766 -97964164 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1901 137 77 15 chrX 64635766 64635862 -97964068 + L1MD3 LINE L1 6904 6993 -1002 * 2289 159 12 21 chrX 64635860 64636288 -97963642 - L1MC3 LINE L1 0 7785 7362 7109 27 2 0 chrX 64636292 64637178 -97962752 - L1P LINE L1 -868 5278 4391 232 26 26 26 chrX 64637640 64637678 -97962252 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1987 143 0 0 chrX 64637723 64638024 -97961906 + AluJb SINE Alu 1 301 -11 451 335 20 40 chrX 64638033 64638233 -97961697 + MIR SINE MIR 21 216 -46 295 254 8 111 chrX 64638789 64638915 -97961015 - MIR3 SINE MIR -6 202 90 596 262 257 9 chrX 64639699 64639909 -97960021 + MIR SINE MIR 1 262 0 262 233 0 0 chrX 64639919 64639979 -97959951 - MIR SINE MIR -26 236 177 291 294 9 46 chrX 64640244 64640353 -97959577 - MIR3 SINE MIR -48 160 56 194 233 14 55 chrX 64641153 64641226 -97958704 + MIR3 SINE MIR 115 184 -24 348 331 115 0 chrX 64641761 64641909 -97958021 - MIR SINE MIR -79 183 19 398 223 119 10 chrX 64642233 64642375 -97957555 - MIR SINE MIR -57 151 1 2363 78 0 0 chrX 64642860 64643156 -97956774 - AluSx SINE Alu -14 298 3 637 254 52 0 chrX 64643411 64643584 -97956346 + MIR SINE MIR 74 255 -7 617 224 63 23 chrX 64644147 64644321 -97955609 + MIR SINE MIR 79 259 -3 448 268 167 27 chrX 64644755 64644956 -97954974 + MIR SINE MIR 43 262 0 227 333 23 0 chrX 64644977 64645064 -97954866 - MIR SINE MIR -81 181 93 255 289 0 48 chrX 64645085 64645168 -97954762 + L3 LINE CR1 1495 1573 -4 215 245 0 19 chrX 64645691 64645744 -97954186 + MIR SINE MIR 59 110 -98 273 282 14 0 chrX 64645757 64645828 -97954102 - L2 LINE L2 0 3313 3242 369 252 68 0 chrX 64646103 64646206 -97953724 - MIR SINE MIR -61 147 38 263 196 36 0 chrX 64646551 64646607 -97953323 + MIR SINE MIR 93 150 -58 29 0 0 0 chrX 64647941 64647970 -97951960 + AT_rich Low_complexity Low_complexity 1 29 0 366 183 0 0 chrX 64648264 64648333 -97951597 - FRAM/FAM SINE Alu -90 85 25 286 274 24 61 chrX 64648408 64648572 -97951358 - MIR3 SINE MIR -2 206 49 249 309 15 69 chrX 64648702 64648906 -97951024 + L2 LINE L2 3078 3270 -2 216 270 16 0 chrX 64649595 64649658 -97950272 + CT-rich Low_complexity Low_complexity 5 68 0 235 258 90 0 chrX 64649779 64649868 -97950062 - MIR3 SINE MIR -3 205 109 306 0 0 0 chrX 64650851 64650885 -97949045 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 425 344 27 27 chrX 64651472 64651670 -97948260 - MIR3 SINE MIR -51 157 16 571 235 167 25 chrX 64651690 64651894 -97948036 - MIR SINE MIR -4 258 26 309 89 0 0 chrX 64651970 64652015 -97947915 + (CA)n Simple_repeat Simple_repeat 2 46 0 246 146 0 42 chrX 64652488 64652536 -97947394 - L2 LINE L2 -6 3307 3262 181 222 37 37 chrX 64652504 64652558 -97947372 - MIR SINE MIR -14 248 195 * 951 190 0 0 chrX 64653495 64653658 -97946272 + AluJo SINE Alu 60 222 -90 199 262 154 67 chrX 64655393 64655542 -97944388 + MIR3 SINE MIR 30 191 -17 1065 204 69 23 chrX 64657779 64658083 -97941847 - L1MC5 LINE L1 -41 7920 7603 249 248 72 92 chrX 64659574 64659727 -97940203 + MIR3 SINE MIR 37 186 -22 645 345 114 22 chrX 64660122 64660569 -97939361 - L3 LINE CR1 -10 1567 1080 180 333 14 14 chrX 64661095 64661167 -97938763 - MIR SINE MIR -50 212 141 480 233 58 0 chrX 64661684 64661804 -97938126 + MIR SINE MIR 80 206 -56 479 288 166 18 chrX 64662071 64662234 -97937696 - MIR SINE MIR -42 220 34 218 178 14 68 chrX 64662493 64662566 -97937364 + G-rich Low_complexity Low_complexity 3 71 0 242 318 0 0 chrX 64663051 64663114 -97936816 + L2 LINE L2 3206 3268 -4 273 291 126 16 chrX 64663233 64663360 -97936570 + MIR SINE MIR 97 237 -25 973 213 9 35 chrX 64663479 64663709 -97936221 + MIR SINE MIR 23 246 -16 1660 152 30 30 chrX 64663841 64664137 -97935793 + AluJo SINE Alu 5 300 -12 181 269 45 15 chrX 64665101 64665168 -97934762 - L2 LINE L2 -212 3060 2992 372 331 32 8 chrX 64665708 64665832 -97934098 - MIR3 SINE MIR -73 135 9 923 155 6 46 chrX 64666563 64666737 -97933193 - MER20 DNA MER1_type -52 167 1 295 283 71 30 chrX 64667450 64667549 -97932381 - MER91A DNA MER1_type -1 195 93 563 267 61 24 chrX 64668329 64668494 -97931436 - MER5B DNA MER1_type 0 178 8 214 258 86 32 chrX 64670292 64670385 -97929545 - MIR SINE MIR -11 251 154 1696 153 0 48 chrX 64670385 64670698 -97929232 + AluJo SINE Alu 1 298 -14 437 264 18 9 chrX 64670753 64670863 -97929067 - MIR SINE MIR -118 144 34 350 206 97 34 chrX 64670954 64671081 -97928849 + MIR SINE MIR 4 139 -69 * 524 224 7 56 chrX 64671079 64671222 -97928708 + MER5B DNA MER1_type 43 178 0 543 157 9 35 chrX 64671267 64671382 -97928548 - MER5A DNA MER1_type -74 115 4 243 0 0 0 chrX 64672082 64672109 -97927821 + (CA)n Simple_repeat Simple_repeat 1 27 0 329 74 0 19 chrX 64672110 64672164 -97927766 + (GA)n Simple_repeat Simple_repeat 1 53 0 275 280 173 33 chrX 64673125 64673275 -97926655 + MIR SINE MIR 22 192 -70 211 196 186 49 chrX 64673976 64674078 -97925852 + L2 LINE L2 1585 1700 -1614 1940 288 160 19 chrX 64674187 64675586 -97924344 + L2 LINE L2 1716 3313 0 206 328 0 0 chrX 64676001 64676068 -97923862 + CT-rich Low_complexity Low_complexity 4 70 0 181 42 0 0 chrX 64676902 64676926 -97923004 + L2 LINE L2 3032 3055 -217 633 260 57 16 chrX 64677526 64677718 -97922212 + MIR3 SINE MIR 3 202 -6 263 216 20 98 chrX 64677746 64677848 -97922082 + MIR3 SINE MIR 64 157 -51 243 88 0 0 chrX 64679223 64679257 -97920673 + (CCCCAG)n Simple_repeat Simple_repeat 6 39 0 526 222 100 44 chrX 64679615 64679795 -97920135 + MIR3 SINE MIR 12 201 -7 525 346 45 44 chrX 64680451 64680947 -97918983 + L2 LINE L2 2658 3164 -108 306 272 59 59 chrX 64682115 64682251 -97917679 - MIR3 SINE MIR -24 184 49 314 247 45 11 chrX 64686383 64686472 -97913458 + L1MC4 LINE L1 6609 6700 -1342 228 152 0 0 chrX 64686485 64686531 -97913399 - LTR66 LTR ERVL -171 439 394 592 294 74 30 chrX 64688381 64688612 -97911318 + MIR SINE MIR 10 250 -12 6716 111 18 19 chrX 64689504 64691017 -97908913 + L1MA2 LINE L1 4799 6300 -4 368 229 14 0 chrX 64691300 64691370 -97908560 + MIR SINE MIR 23 93 -169 215 221 58 106 chrX 64691369 64691465 -97908465 - MIR SINE MIR -159 103 11 * 1082 185 5 5 chrX 64691465 64691654 -97908276 - MER5A DNA MER1_type 0 189 1 384 214 164 57 chrX 64691736 64691876 -97908054 + MIR SINE MIR 27 181 -81 751 243 11 97 chrX 64692218 64692432 -97907498 - MER102b DNA MER1_type -1087 341 153 1811 193 7 0 chrX 64692432 64692732 -97907198 - AluJb SINE Alu 0 312 11 751 243 11 97 chrX 64692732 64692785 -97907145 - MER102b DNA MER1_type -1275 153 97 1646 172 69 10 chrX 64692786 64693076 -97906854 + AluJo SINE Alu 1 307 -5 1676 140 89 81 chrX 64693371 64693743 -97906187 - THE1C LTR MaLR 0 375 1 1565 134 157 4 chrX 64694277 64694578 -97905352 + AluJo SINE Alu 1 341 0 224 278 44 11 chrX 64694596 64694686 -97905244 - MIR3 SINE MIR -106 102 10 903 251 148 10 chrX 64694687 64694998 -97904932 - L2 LINE L2 -2 3311 2958 1283 209 19 38 chrX 64695098 64695361 -97904569 + AluJo SINE Alu 1 258 -54 2069 119 14 0 chrX 64695362 64695677 -97904253 - AluSx SINE Alu 0 319 1 5002 191 36 11 chrX 64695924 64697104 -97902826 + L1 LINE L1 4124 5332 -814 43205 37 1 1 chrX 64697110 64703258 -97896672 + L1PA3 LINE L1 9 6154 -1 2927 125 12 0 chrX 64703249 64703730 -97896200 + L1PB3 LINE L1 5290 5776 -378 * 205 158 61 0 chrX 64703739 64703821 -97896109 + (TA)n Simple_repeat Simple_repeat 2 88 0 2484 116 5 3 chrX 64703834 64704205 -97895725 + L1PB3 LINE L1 5782 6153 -1 409 338 114 34 chrX 64704404 64704966 -97894964 + L2 LINE L2 1897 2503 -811 1177 290 109 38 chrX 64704980 64705474 -97894456 - L2 LINE L2 0 3313 2787 491 284 0 15 chrX 64705841 64705975 -97893955 + MIR3 SINE MIR 15 146 -62 668 252 55 71 chrX 64706336 64706475 -97893455 + MIR SINE MIR 9 144 -118 2721 106 5 16 chrX 64706475 64706854 -97893076 + THE1C LTR MaLR 1 375 0 668 252 55 71 chrX 64706854 64706968 -97892962 + MIR SINE MIR 144 258 -4 1437 175 63 49 chrX 64707102 64707388 -97892542 - AluJo SINE Alu -22 290 1 231 380 58 7 chrX 64707744 64707881 -97892049 - MIR SINE MIR -16 246 103 892 164 121 47 chrX 64708316 64708572 -97891358 + ORSL DNA AcHobo 1 275 0 387 243 53 53 chrX 64709318 64709470 -97890460 - MIR SINE MIR -59 203 52 259 231 39 26 chrX 64709673 64709751 -97890179 - MIR SINE MIR -1 261 183 2207 120 11 49 chrX 64709752 64710102 -97889828 + MER1B DNA MER1_type 1 337 0 575 285 106 10 chrX 64710104 64710198 -97889732 - MIR SINE MIR -8 254 170 2305 125 33 0 chrX 64710198 64710534 -97889396 + MER7A DNA MER2_type 2 346 0 575 285 106 10 chrX 64710534 64710646 -97889284 - MIR SINE MIR -92 170 28 276 299 167 11 chrX 64710712 64710886 -97889044 + L3b LINE CR1 1184 1384 -199 214 327 0 0 chrX 64711576 64711628 -97888302 + MIR SINE MIR 33 84 -124 809 251 11 0 chrX 64712633 64712816 -97887114 + MLT1A1 LTR MaLR 179 363 -2 2247 140 24 52 chrX 64713225 64713682 -97886248 - LTR47A LTR ERVL -8 444 1 1783 254 122 14 chrX 64714655 64715467 -97884463 + L2 LINE L2 2407 3309 -4 350 246 0 0 chrX 64715883 64715948 -97883982 - L2 LINE L2 -1 3312 3248 304 313 0 0 chrX 64716524 64716620 -97883310 + CT-rich Low_complexity Low_complexity 4 99 0 264 223 23 108 chrX 64716840 64716893 -97883037 - L2 LINE L2 -213 3059 3003 1831 165 3 19 chrX 64716893 64717202 -97882728 + AluJo SINE Alu 1 304 -8 264 223 23 108 chrX 64717202 64717278 -97882652 - L2 LINE L2 -269 3003 2941 543 210 0 0 chrX 64717456 64717575 -97882355 - MER103 DNA DNA -47 119 1 395 345 20 15 chrX 64717639 64717836 -97882094 - L2 LINE L2 -557 2757 2560 1811 156 0 76 chrX 64719194 64719522 -97880408 + AluJo SINE Alu 1 303 -9 324 0 0 0 chrX 64720203 64720239 -97879691 + (CA)n Simple_repeat Simple_repeat 2 37 0 213 244 115 13 chrX 64720715 64720793 -97879137 - L3b LINE CR1 -170 1413 1328 1087 189 31 22 chrX 64721032 64721260 -97878670 + MIR SINE MIR 12 241 -21 306 0 0 0 chrX 64721264 64721298 -97878632 + (TC)n Simple_repeat Simple_repeat 2 35 0 1654 179 6 26 chrX 64721322 64721634 -97878296 - AluJo SINE Alu -6 306 1 901 282 65 0 chrX 64721659 64721904 -97878026 - MIR SINE MIR 0 262 2 865 315 44 32 chrX 64722004 64722475 -97877455 + L2 LINE L2 2797 3270 -2 214 333 0 13 chrX 64722645 64722720 -97877210 + GA-rich Low_complexity Low_complexity 3 76 0 232 214 0 43 chrX 64723396 64723466 -97876464 + GA-rich Low_complexity Low_complexity 2 68 0 207 0 0 0 chrX 64723708 64723731 -97876199 + (GA)n Simple_repeat Simple_repeat 2 24 0 223 359 75 25 chrX 64723909 64724068 -97875862 - MIR3 SINE MIR -27 181 15 343 272 66 59 chrX 64724191 64724327 -97875603 - MIR SINE MIR -99 163 27 1192 209 16 11 chrX 64724382 64724658 -97875272 - MLT2B1 LTR ERVL 0 520 238 286 203 0 0 chrX 64724717 64724776 -97875154 - MLT1L LTR MaLR -382 233 175 4978 166 18 21 chrX 64725128 64725695 -97874235 - L1MB5 LINE L1 0 6174 5607 2354 100 0 0 chrX 64725695 64725994 -97873936 - AluSx SINE Alu -13 299 1 4978 166 18 21 chrX 64725994 64726464 -97873466 - L1MB5 LINE L1 -567 5607 5137 2331 103 0 0 chrX 64726464 64726755 -97873175 - AluSg SINE Alu -19 291 1 4978 166 18 21 chrX 64726755 64726865 -97873065 - L1MB5 LINE L1 -1037 5137 5028 1658 147 70 11 chrX 64726865 64727137 -97872793 - AluJb SINE Alu -14 298 11 4978 166 18 21 chrX 64727137 64727271 -97872659 - L1MB5 LINE L1 -1146 5028 4897 535 270 36 7 chrX 64727306 64727443 -97872487 + MIR SINE MIR 46 186 -76 220 216 59 0 chrX 64727829 64727880 -97872050 + CT-rich Low_complexity Low_complexity 5 58 0 278 258 79 22 chrX 64728037 64728126 -97871804 - MIR SINE MIR -94 114 21 923 142 16 77 chrX 64728229 64728412 -97871518 - MER5B DNA MER1_type -1 177 6 194 323 81 57 chrX 64728598 64728722 -97871208 - MIR SINE MIR -82 180 54 286 222 22 11 chrX 64728964 64729054 -97870876 + CT-rich Low_complexity Low_complexity 1 91 0 429 267 30 37 chrX 64729145 64729280 -97870650 + MIR3 SINE MIR 21 154 -54 23 0 0 0 chrX 64729302 64729325 -97870605 + AT_rich Low_complexity Low_complexity 1 23 0 201 39 0 0 chrX 64730027 64730053 -97869877 + (CA)n Simple_repeat Simple_repeat 1 26 0 243 189 0 0 chrX 64730076 64730129 -97869801 + GA-rich Low_complexity Low_complexity 1 53 0 214 284 136 12 chrX 64730194 64730275 -97869655 - MER5A DNA MER1_type -98 91 1 803 214 17 22 chrX 64730278 64730456 -97869474 + MER5B DNA MER1_type 1 177 -1 352 289 22 73 chrX 64730894 64731238 -97868692 + L2 LINE L2 2724 3112 -160 1164 155 58 18 chrX 64731244 64731470 -97868460 - MER96B DNA MER1_type? -182 235 1 197 200 0 80 chrX 64731493 64731543 -97868387 + L2 LINE L2 2986 3031 -282 1160 286 47 23 chrX 64731546 64731973 -97867957 + L1ME1 LINE L1 4819 5255 -891 1640 128 0 4 chrX 64734327 64734554 -97865376 - AluSq SINE Alu -87 226 1 826 221 201 38 chrX 64734626 64735070 -97864860 + L1ME1 LINE L1 5651 6166 0 1714 166 3 23 chrX 64735075 64735376 -97864554 + AluJo SINE Alu 1 295 -17 192 267 22 0 chrX 64735379 64735424 -97864506 + L2 LINE L2 3029 3074 -239 253 30 0 0 chrX 64735430 64735463 -97864467 + L1MA8 LINE L1 6230 6262 -29 1849 174 0 0 chrX 64735486 64735768 -97864162 - AluJb SINE Alu -30 282 1 222 86 25 74 chrX 64735779 64735860 -97864070 + (TAAA)n Simple_repeat Simple_repeat 4 80 0 270 218 12 159 chrX 64735860 64735932 -97863998 + L2 LINE L2 3083 3117 -196 719 194 0 24 chrX 64735932 64736056 -97863874 - FLAM_A SINE Alu -12 121 1 270 218 12 159 chrX 64736056 64736153 -97863777 + L2 LINE L2 3117 3227 -86 435 333 0 0 chrX 64736245 64736392 -97863538 + MIR SINE MIR 20 166 -96 1734 176 42 0 chrX 64736757 64737046 -97862884 + AluJb SINE Alu 1 301 -11 656 114 0 0 chrX 64737059 64737147 -97862783 + L1PA6 LINE L1 11 98 -6048 * 34257 84 8 6 chrX 64737145 64738855 -97861075 + L1PA6 LINE L1 623 2330 -3824 207 0 0 0 chrX 64738855 64738878 -97861052 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 34257 84 8 6 chrX 64738878 64742697 -97857233 + L1PA6 LINE L1 2330 6154 0 3213 128 38 11 chrX 64742697 64743230 -97856700 - LTR49 LTR ERV1 -48 547 1 245 301 0 36 chrX 64743250 64743333 -97856597 + MIR SINE MIR 47 126 -136 207 69 0 0 chrX 64743337 64743366 -97856564 + (TCCCC)n Simple_repeat Simple_repeat 5 33 0 1710 175 3 11 chrX 64743370 64743691 -97856239 - AluJb SINE Alu 0 319 1 1777 33 0 0 chrX 64743777 64743990 -97855940 - L1P LINE L1 -926 5220 5008 1880 34 17 0 chrX 64743994 64744230 -97855700 + L1P2 LINE L1 5254 5493 -661 1552 78 0 0 chrX 64744669 64744861 -97855069 + AluSg/x SINE Alu 119 310 0 1064 168 6 0 chrX 64744879 64745058 -97854872 - L1MC2 LINE L1 -471 5873 5694 6017 38 3 0 chrX 64747294 64747971 -97851959 + L1PA5 LINE L1 5476 6154 0 239 288 72 24 chrX 64748145 64748270 -97851660 - MIR SINE MIR -15 247 117 21 0 0 0 chrX 64748775 64748796 -97851134 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chrX 64749103 64749128 -97850802 + (TA)n Simple_repeat Simple_repeat 2 26 0 369 58 0 0 chrX 64749128 64749180 -97850750 + (GA)n Simple_repeat Simple_repeat 1 52 0 272 257 18 24 chrX 64749199 64749312 -97850618 - MIR SINE MIR -51 211 101 533 306 12 6 chrX 64749314 64749474 -97850456 + MIR3 SINE MIR 3 163 -45 296 295 13 0 chrX 64749480 64749558 -97850372 + MER117 DNA MER1_type 34 112 -85 2791 176 32 41 chrX 64749566 64750100 -97849830 - LTR26B LTR ERV1 -2 529 1 234 262 60 48 chrX 64750372 64750456 -97849474 + MIR3 SINE MIR 81 165 -43 735 298 78 8 chrX 64750643 64750885 -97849045 + MIR SINE MIR 4 262 0 2458 177 60 5 chrX 64750897 64751333 -97848597 + LTR32 LTR ERVL 12 471 0 211 226 0 36 chrX 64751672 64751756 -97848174 + CT-rich Low_complexity Low_complexity 3 83 0 2757 115 38 9 chrX 64751862 64752287 -97847643 + LTR49 LTR ERV1 1 437 -158 2255 8 0 0 chrX 64752287 64752533 -97847397 - L1PA3 LINE L1 -282 5873 5628 889 92 23 0 chrX 64752507 64752638 -97847292 + L1PA3 LINE L1 6021 6154 -1 * 658 143 41 54 chrX 64752638 64752785 -97847145 + LTR49 LTR ERV1 417 561 -34 3600 165 60 31 chrX 64752802 64753474 -97846456 + LTR8 LTR ERV1 1 691 0 279 278 17 35 chrX 64753637 64753752 -97846178 + L3 LINE CR1 1416 1528 -49 237 159 0 0 chrX 64754258 64754302 -97845628 + GA-rich Low_complexity Low_complexity 1 44 0 614 327 82 48 chrX 64754422 64754862 -97845068 - L2 LINE L2 0 3313 2859 442 286 116 0 chrX 64755135 64755282 -97844648 - L2 LINE L2 -15 3257 3094 686 274 35 84 chrX 64755909 64756315 -97843615 + MLT1I LTR MaLR 20 401 -8 675 222 41 18 chrX 64756322 64756493 -97843437 + MIR SINE MIR 88 262 0 221 304 13 13 chrX 64757449 64757528 -97842402 + MER5A DNA MER1_type 1 79 -110 551 257 28 45 chrX 64757937 64758116 -97841814 - MIR SINE MIR -51 211 36 2566 107 8 8 chrX 64758434 64758789 -97841141 + THE1A LTR MaLR 1 355 0 7977 87 258 2 chrX 64758789 64760047 -97839883 + THE1A-int LTR MaLR 1 1580 0 2326 118 35 9 chrX 64760047 64760393 -97839537 + THE1A LTR MaLR 1 355 0 386 235 11 6 chrX 64760694 64760795 -97839135 + MIR SINE MIR 25 123 -85 378 321 36 108 chrX 64761510 64761815 -97838115 + L2 LINE L2 2913 3195 -77 987 267 9 54 chrX 64762377 64762710 -97837220 - L2 LINE L2 -2 3311 2994 237 256 26 14 chrX 64763191 64763291 -97836639 + MIR SINE MIR 86 146 -62 318 67 0 0 chrX 64763658 64763703 -97836227 + (TG)n Simple_repeat Simple_repeat 2 46 0 2602 40 0 0 chrX 64763738 64764038 -97835892 + AluY SINE Alu 1 300 -11 1740 185 3 3 chrX 64764172 64764474 -97835456 + AluJo SINE Alu 1 302 -10 281 272 220 26 chrX 64764565 64764870 -97835060 - L2 LINE L2 -407 2907 2544 230 265 177 61 chrX 64764953 64765134 -97834796 - L3 LINE CR1 -685 892 691 687 233 111 6 chrX 64765149 64765329 -97834601 + MIR SINE MIR 64 262 0 822 122 0 0 chrX 64765656 64765763 -97834167 + FRAM SINE Alu 47 153 -23 429 280 15 0 chrX 64765764 64765896 -97834034 - L1M4 LINE L1 -3589 2557 2424 * 1608 251 64 2 chrX 64765894 64766364 -97833566 + L1MB5 LINE L1 3448 3946 -2200 * 4003 195 58 9 chrX 64766359 64767738 -97832192 + L1MB5 LINE L1 4731 6174 0 396 242 11 62 chrX 64767931 64768111 -97831819 + HAL1b LINE L1 766 2325 -182 411 221 128 59 chrX 64768191 64768395 -97831535 + HAL1 LINE L1 2287 2504 -3 372 262 48 35 chrX 64768557 64768702 -97831228 - L2 LINE L2 -167 3146 3000 214 254 35 97 chrX 64768781 64768895 -97831035 - L3 LINE CR1 -8 1569 1463 439 275 213 9 chrX 64768955 64769166 -97830764 - MIR SINE MIR -6 256 3 387 0 0 0 chrX 64769446 64769489 -97830441 + (TG)n Simple_repeat Simple_repeat 1 43 0 579 85 0 0 chrX 64769998 64770080 -97829850 + (TC)n Simple_repeat Simple_repeat 1 82 0 322 304 24 101 chrX 64770108 64770355 -97829575 - MIR SINE MIR -28 234 7 545 295 24 0 chrX 64770480 64770646 -97829284 + MIR SINE MIR 73 242 -20 630 221 20 13 chrX 64770754 64770903 -97829027 + MLT1F LTR MaLR 48 197 -308 1750 163 7 14 chrX 64770947 64771241 -97828689 - AluJo SINE Alu -20 292 1 1487 122 39 0 chrX 64771242 64771472 -97828458 + ERVL-D LTR ERVL 5519 5757 -7 1462 196 36 91 chrX 64771472 64771910 -97828020 + MLT2D LTR ERVL 1 414 0 6551 177 52 43 chrX 64771910 64774181 -97825749 + L1MB7 LINE L1 3611 5930 -254 921 111 0 0 chrX 64774181 64774353 -97825577 + (TA)n Simple_repeat Simple_repeat 1 172 0 6551 177 52 43 chrX 64774353 64774559 -97825371 + L1MB7 LINE L1 5930 6133 -51 901 170 0 27 chrX 64774564 64774711 -97825219 + AluJo SINE Alu 3 145 -167 16164 181 6 11 chrX 64774736 64774888 -97825042 + L1PB1 LINE L1 1615 1766 -4385 2172 125 10 0 chrX 64774888 64775193 -97824737 + AluSg SINE Alu 1 308 -2 16164 181 6 11 chrX 64775193 64779616 -97820314 + L1PB1 LINE L1 1766 6047 -104 1240 147 15 5 chrX 64779616 64779817 -97820113 + L1PA16 LINE L1 5959 6164 -2 16164 181 6 11 chrX 64779817 64779922 -97820008 + L1PB1 LINE L1 6047 6151 0 980 213 156 5 chrX 64779960 64780232 -97819698 + MLT1F LTR MaLR 195 496 -46 180 0 0 0 chrX 64780232 64780252 -97819678 + (A)n Simple_repeat Simple_repeat 1 20 0 875 206 0 6 chrX 64780252 64780422 -97819508 + AluJo SINE Alu 120 288 -24 242 174 0 0 chrX 64780424 64780470 -97819460 + L1MB7 LINE L1 6131 6176 -8 2310 100 0 0 chrX 64780483 64780794 -97819136 + AluSx SINE Alu 1 311 -1 1921 112 14 0 chrX 64780851 64781202 -97818728 + AluSx SINE Alu 1 355 0 203 196 20 20 chrX 64781396 64781447 -97818483 - MIR SINE MIR -54 208 158 311 302 211 8 chrX 64783022 64783239 -97816691 + MIR SINE MIR 1 262 0 270 327 44 89 chrX 64783272 64783587 -97816343 - L2 LINE L2 -16 3256 2956 462 222 35 62 chrX 64785865 64786009 -97813921 + MIR SINE MIR 117 256 -6 342 234 13 0 chrX 64786309 64786386 -97813544 + MIR SINE MIR 46 123 -139 575 289 46 0 chrX 64786727 64786900 -97813030 - MIR SINE MIR -12 250 70 201 178 0 0 chrX 64787197 64787242 -97812688 + (TG)n Simple_repeat Simple_repeat 2 46 0 508 301 137 14 chrX 64787978 64788197 -97811733 + MIR SINE MIR 2 247 -15 307 331 6 6 chrX 64793111 64793277 -97806653 + CT-rich Low_complexity Low_complexity 2 167 0 330 26 0 0 chrX 64793663 64793702 -97806228 + (TG)n Simple_repeat Simple_repeat 2 40 0 404 276 20 41 chrX 64794697 64794842 -97805088 - MIR SINE MIR -56 206 63 559 287 173 0 chrX 64798175 64798392 -97801538 - MIR SINE MIR -10 252 3 486 146 0 0 chrX 64798978 64799060 -97800870 + (TG)n Simple_repeat Simple_repeat 1 82 0 501 255 41 41 chrX 64800057 64800202 -97799728 - MIR3 SINE MIR -34 174 30 252 0 0 0 chrX 64802218 64802246 -97797684 + (CA)n Simple_repeat Simple_repeat 1 28 0 185 108 27 0 chrX 64803071 64803108 -97796822 + (TG)n Simple_repeat Simple_repeat 1 38 0 420 294 21 43 chrX 64804617 64804804 -97795126 - MIR SINE MIR -34 228 46 249 268 31 10 chrX 64805862 64805959 -97793971 + MIR SINE MIR 20 118 -90 573 268 8 0 chrX 64805983 64806110 -97793820 - L2 LINE L2 0 3313 3186 440 272 68 14 chrX 64806911 64807058 -97792872 - MIR3 SINE MIR -24 184 30 189 0 0 0 chrX 64807113 64807134 -97792796 + (TG)n Simple_repeat Simple_repeat 1 21 0 557 302 21 16 chrX 64807722 64807914 -97792016 - MIR3 SINE MIR -13 195 3 727 319 107 37 chrX 64808549 64809250 -97790680 + L2 LINE L2 2508 3265 -7 704 298 7 75 chrX 64809374 64809653 -97790277 - MIR SINE MIR 0 262 3 944 302 4 8 chrX 64809747 64810005 -97789925 + MIR SINE MIR 4 260 -2 245 339 96 26 chrX 64810274 64810389 -97789541 + MIR SINE MIR 21 143 -65 396 217 16 70 chrX 64810779 64810908 -97789022 + L1ME LINE L1 5513 5634 -487 893 154 0 0 chrX 64811031 64811161 -97788769 - FLAM_A SINE Alu -3 130 1 495 107 0 0 chrX 64811188 64811263 -97788667 + (CA)n Simple_repeat Simple_repeat 2 76 0 576 272 6 0 chrX 64811396 64811554 -97788376 + MIR SINE MIR 103 261 -1 390 326 22 7 chrX 64811581 64811719 -97788211 + L2 LINE L2 3133 3272 0 231 213 21 0 chrX 64811775 64811822 -97788108 - MIR SINE MIR -139 69 22 444 276 41 27 chrX 64812869 64813079 -97786851 - MIR SINE MIR -46 216 3 274 322 0 0 chrX 64813243 64813330 -97786600 - MIR SINE MIR -89 119 33 612 167 28 0 chrX 64814391 64814499 -97785431 + MIR SINE MIR 98 208 -54 844 304 4 20 chrX 64814537 64814790 -97785140 - MIR SINE MIR -8 254 6 508 311 43 6 chrX 64816322 64816486 -97783444 + MIR SINE MIR 2 171 -91 2215 109 0 0 chrX 64816520 64816822 -97783108 - AluSx SINE Alu -10 302 1 543 274 127 25 chrX 64817334 64817571 -97782359 - MIR SINE MIR 0 262 2 405 293 80 106 chrX 64817881 64818528 -97781402 - L2 LINE L2 -1 3271 2619 1554 147 91 50 chrX 64818620 64818939 -97780991 - MLT1A1 LTR MaLR -30 335 4 663 259 59 62 chrX 64818946 64819199 -97780731 - L2 LINE L2 -27 3286 3033 2202 152 30 25 chrX 64819199 64819561 -97780369 - THE1B LTR MaLR 0 364 1 663 259 59 62 chrX 64819561 64819612 -97780318 - L2 LINE L2 -280 3033 2983 217 260 150 30 chrX 64819645 64819745 -97780185 + MIR SINE MIR 27 138 -70 387 286 8 17 chrX 64820104 64820223 -97779707 - MIR SINE MIR -57 151 34 711 279 53 5 chrX 64820359 64820567 -97779363 - MIR SINE MIR -40 222 5 910 196 27 16 chrX 64820876 64821060 -97778870 + MER5A DNA MER1_type 1 186 -3 369 305 26 7 chrX 64822293 64822447 -97777483 - MIR3 SINE MIR -48 160 4 768 176 0 44 chrX 64822593 64822729 -97777201 + AluJo SINE Alu 7 136 -176 273 275 244 0 chrX 64822959 64823090 -97776840 - MIR SINE MIR 0 262 100 276 305 31 47 chrX 64823147 64823275 -97776655 - MIR SINE MIR -66 196 71 21 0 0 0 chrX 64823800 64823821 -97776109 + AT_rich Low_complexity Low_complexity 1 21 0 279 182 0 26 chrX 64824816 64824893 -97775037 + L1ME4a LINE L1 6043 6117 -4 264 329 25 56 chrX 64825359 64825520 -97774410 + MIR SINE MIR 49 204 -58 * 770 304 34 8 chrX 64825486 64825723 -97774207 - MIR SINE MIR -13 249 7 201 283 0 0 chrX 64825996 64826049 -97773881 + C-rich Low_complexity Low_complexity 1 53 0 288 0 0 0 chrX 64826980 64827012 -97772918 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 125 0 0 chrX 64827012 64827044 -97772886 + (GA)n Simple_repeat Simple_repeat 2 33 0 229 314 105 39 chrX 64827690 64827843 -97772087 + MIR3 SINE MIR 30 192 -16 214 366 24 0 chrX 64827899 64828022 -97771908 + MIR SINE MIR 65 190 -72 282 288 62 34 chrX 64828611 64828788 -97771142 + L2 LINE L2 1628 1809 -1505 1724 259 59 23 chrX 64829338 64829901 -97770029 - L2 LINE L2 -506 2808 2226 936 284 78 19 chrX 64829904 64830277 -97769653 + L2 LINE L2 2919 3313 0 697 283 25 10 chrX 64830276 64830474 -97769456 - MIR SINE MIR -49 213 13 * 481 252 57 43 chrX 64830500 64830710 -97769220 + MIR SINE MIR 41 253 -9 273 162 29 162 chrX 64830711 64830816 -97769114 + MIR3 SINE MIR 115 205 -3 1014 247 13 4 chrX 64832072 64832307 -97767623 - MIR SINE MIR 0 262 26 270 0 0 0 chrX 64832946 64832976 -97766954 + (TG)n Simple_repeat Simple_repeat 1 30 0 279 347 64 32 chrX 64832994 64833308 -97766622 - L2 LINE L2 -480 2834 2511 397 239 89 17 chrX 64833452 64833632 -97766298 - L1ME4a LINE L1 -3 6118 5926 338 297 144 0 chrX 64833687 64833805 -97766125 - L1ME4a LINE L1 -1988 5820 5686 348 270 0 20 chrX 64833867 64833967 -97765963 + MIR3 SINE MIR 64 161 -47 224 271 23 23 chrX 64834027 64834156 -97765774 + CT-rich Low_complexity Low_complexity 5 133 0 186 43 0 0 chrX 64834706 64834729 -97765201 + (CA)n Simple_repeat Simple_repeat 2 24 0 189 239 14 56 chrX 64834806 64834877 -97765053 - L3 LINE CR1 -1222 355 288 1217 265 46 48 chrX 64835819 64836580 -97763350 - L2 LINE L2 -3 3310 2553 403 188 154 17 chrX 64837404 64837521 -97762409 + L2 LINE L2 3137 3269 -3 721 194 47 24 chrX 64838072 64838242 -97761688 + MIR SINE MIR 49 222 -40 197 286 18 0 chrX 64838407 64838463 -97761467 - MIR SINE MIR -50 212 156 474 240 183 34 chrX 64839556 64839731 -97760199 - MIR SINE MIR -33 229 29 499 268 66 13 chrX 64840590 64840781 -97759149 - MIR SINE MIR -56 206 11 213 274 12 48 chrX 64841362 64841446 -97758484 + MIR SINE MIR 35 115 -147 691 293 54 0 chrX 64843798 64844003 -97755927 - MIR SINE MIR -1 261 46 21 0 0 0 chrX 64844444 64844465 -97755465 + AT_rich Low_complexity Low_complexity 1 21 0 451 221 207 7 chrX 64844849 64844994 -97754936 + MER5A DNA MER1_type 4 177 -12 547 135 11 0 chrX 64845006 64845095 -97754835 + MER5A DNA MER1_type 1 90 -99 252 287 165 17 chrX 64845331 64845446 -97754484 - MIR SINE MIR -12 250 119 741 218 140 5 chrX 64845554 64845747 -97754183 - MIR SINE MIR -20 242 24 393 250 25 25 chrX 64846468 64846588 -97753342 - MIR SINE MIR -62 200 81 800 335 83 37 chrX 64847991 64849051 -97750879 + L2 LINE L2 1462 2570 -744 204 40 0 0 chrX 64849058 64849083 -97750847 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2500 281 78 13 chrX 64849083 64850356 -97749574 - L2 LINE L2 -17 3296 1935 1117 222 0 17 chrX 64850373 64850607 -97749323 - MIR SINE MIR -20 242 13 637 314 17 21 chrX 64850639 64850875 -97749055 - L2 LINE L2 -1379 1935 1701 235 172 0 31 chrX 64850875 64850939 -97748991 + CT-rich Low_complexity Low_complexity 1 62 0 380 293 75 49 chrX 64850993 64851259 -97748671 - L2 LINE L2 -1684 1630 1358 333 234 108 54 chrX 64851279 64851406 -97748524 + L2 LINE L2 2586 2726 -588 2435 71 3 0 chrX 64851406 64851714 -97748216 + AluY SINE Alu 1 309 -2 333 234 108 54 chrX 64851714 64851753 -97748177 + L2 LINE L2 2726 2761 -553 309 267 67 19 chrX 64851892 64851997 -97747933 + L2 LINE L2 3153 3262 -10 633 264 126 26 chrX 64852269 64852500 -97747430 - MIR SINE MIR 0 262 9 959 190 11 17 chrX 64852517 64852696 -97747234 - MER5B DNA MER1_type 0 178 1 273 336 28 0 chrX 64854027 64854134 -97745796 - MIR3 SINE MIR -84 124 15 505 337 11 11 chrX 64854453 64854643 -97745287 - MIR SINE MIR -61 201 12 212 268 0 28 chrX 64855751 64855822 -97744108 + CT-rich Low_complexity Low_complexity 2 70 0 277 294 0 0 chrX 64855847 64855915 -97744015 + C-rich Low_complexity Low_complexity 1 68 0 245 128 21 0 chrX 64856074 64856121 -97743809 + (CGGG)n Simple_repeat Simple_repeat 3 50 0 243 360 10 20 chrX 64856263 64856363 -97743567 - MIR3 SINE MIR -107 101 3 647 265 48 83 chrX 64856848 64857199 -97742731 - L2 LINE L2 0 3272 2934 2482 55 3 3 chrX 64857209 64857518 -97742412 + AluY SINE Alu 1 309 -2 720 285 26 10 chrX 64858085 64858278 -97741652 + MER91A DNA MER1_type 1 196 0 378 219 80 139 chrX 64858822 64859023 -97740907 - MIR SINE MIR -24 238 50 182 167 409 15 chrX 64859136 64859202 -97740728 - MIR SINE MIR -109 153 62 273 366 8 8 chrX 64860186 64860309 -97739621 + MIR SINE MIR 23 145 -63 491 204 9 9 chrX 64860608 64860716 -97739214 - L2 LINE L2 0 3313 3206 991 176 0 16 chrX 64860719 64860912 -97739018 - AluJb SINE Alu -1 311 122 1885 156 3 3 chrX 64860927 64861235 -97738695 - AluJb SINE Alu -4 308 1 831 186 0 0 chrX 64861245 64861385 -97738545 - FLAM_C SINE Alu -2 141 2 223 349 12 12 chrX 64861830 64861913 -97738017 + MIR SINE MIR 16 98 -110 290 350 6 49 chrX 64862206 64862369 -97737561 + MIR SINE MIR 59 214 -48 234 0 0 0 chrX 64862906 64862932 -97736998 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 288 0 0 0 chrX 64862931 64862963 -97736967 + (GA)n Simple_repeat Simple_repeat 1 32 0 202 191 32 63 chrX 64864471 64864534 -97735396 - MIR3 SINE MIR -40 168 108 1309 79 6 16 chrX 64864748 64865069 -97734861 + (TTTC)n Simple_repeat Simple_repeat 1 498 0 393 220 68 8 chrX 64865087 64865205 -97734725 - L1ME4a LINE L1 -11 6110 5986 2245 85 0 3 chrX 64865313 64865608 -97734322 + AluSg SINE Alu 5 298 -12 2565 105 8 11 chrX 64865614 64865985 -97733945 - L1MB1 LINE L1 -17 6151 5782 269 261 96 26 chrX 64865987 64866102 -97733828 + MIR3 SINE MIR 83 205 -3 397 80 8 240 chrX 64866124 64866249 -97733681 + MLT1A2 LTR MaLR 1 96 -278 455 101 13 0 chrX 64866249 64866328 -97733602 + (TA)n Simple_repeat Simple_repeat 2 81 0 2418 142 13 34 chrX 64866328 64866844 -97733086 - L1M3 LINE L1 -532 5780 5255 377 301 17 87 chrX 64867034 64867207 -97732723 + MIR SINE MIR 47 207 -55 231 257 95 29 chrX 64867272 64867377 -97732553 + MIR3 SINE MIR 94 205 -3 1478 151 101 40 chrX 64867399 64867763 -97732167 + MLT1A1 LTR MaLR 1 363 -2 334 286 11 0 chrX 64868172 64868263 -97731667 - MIR SINE MIR -118 144 53 227 362 29 9 chrX 64868397 64868502 -97731428 - MIR3 SINE MIR -9 199 93 214 224 0 35 chrX 64868644 64868702 -97731228 - MIR3 SINE MIR -3 205 150 427 313 62 7 chrX 64869548 64869692 -97730238 - MIR SINE MIR -17 245 94 230 258 34 67 chrX 64870278 64870367 -97729563 + L3b LINE CR1 1298 1383 -200 240 366 53 0 chrX 64871036 64871167 -97728763 - L3b LINE CR1 -131 1452 1315 283 152 0 0 chrX 64871745 64871791 -97728139 + L3 LINE CR1 1530 1575 -2 809 311 39 11 chrX 64872416 64872702 -97727228 + MER102b DNA MER1_type 6 299 -42 404 204 10 48 chrX 64872704 64872807 -97727123 - MIR SINE MIR -72 136 38 215 143 24 24 chrX 64873146 64873188 -97726742 + (CCGGG)n Simple_repeat Simple_repeat 1 42 0 204 353 0 0 chrX 64873293 64873361 -97726569 + C-rich Low_complexity Low_complexity 6 73 0 384 22 0 0 chrX 64873933 64873978 -97725952 + (CA)n Simple_repeat Simple_repeat 2 46 0 294 98 0 0 chrX 64873981 64874032 -97725898 + (CAG)n Simple_repeat Simple_repeat 3 53 0 654 202 0 0 chrX 64874810 64874924 -97725006 - MER81 DNA DNA 0 114 1 333 200 0 131 chrX 64874979 64875109 -97724821 - MIR SINE MIR -74 188 76 464 279 36 18 chrX 64875916 64876081 -97723849 + MIR3 SINE MIR 38 205 -3 671 156 67 94 chrX 64876100 64876280 -97723650 - FRAM SINE Alu -9 167 1 335 313 91 23 chrX 64876414 64876590 -97723340 - MIR SINE MIR -16 246 59 699 132 162 0 chrX 64876593 64876729 -97723201 - BC200 scRNA scRNA -41 159 2 191 218 0 36 chrX 64876737 64876792 -97723138 - MIR SINE MIR -209 53 1 232 337 35 0 chrX 64876843 64876929 -97723001 - MIR SINE MIR -65 197 109 387 310 54 0 chrX 64877160 64877289 -97722641 - MIR SINE MIR -14 248 113 180 111 0 0 chrX 64877470 64877497 -97722433 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 799 221 19 48 chrX 64877591 64877799 -97722131 - MIR SINE MIR -15 247 46 383 332 31 31 chrX 64877815 64878107 -97721823 - L2 LINE L2 -503 2811 2520 260 306 8 58 chrX 64878110 64878231 -97721699 + MER91A DNA MER1_type 82 196 0 503 298 52 21 chrX 64878962 64879153 -97720777 + MIR3 SINE MIR 11 207 -1 371 222 11 0 chrX 64879439 64879529 -97720401 + MIR SINE MIR 58 148 -114 1365 236 85 20 chrX 64879529 64879974 -97719956 - MLT1L LTR MaLR -15 600 127 486 236 49 16 chrX 64879998 64880121 -97719809 + MER5B DNA MER1_type 48 174 -4 241 272 120 56 chrX 64880121 64880246 -97719684 - MLT1L LTR MaLR -456 159 27 197 379 17 17 chrX 64880388 64880504 -97719426 + MER5B DNA MER1_type 1 116 -62 231 217 0 0 chrX 64881379 64881425 -97718505 - L2 LINE L2 -6 3307 3262 367 210 118 34 chrX 64881771 64881890 -97718040 + MIR3 SINE MIR 31 159 -49 869 268 112 29 chrX 64881895 64882407 -97717523 - L3 LINE CR1 -3 1574 967 228 291 64 0 chrX 64882423 64882533 -97717397 + L2 LINE L2 3187 3303 -10 202 264 0 77 chrX 64883433 64883524 -97716406 + MIR3 SINE MIR 8 91 -117 1648 202 19 7 chrX 64884635 64884942 -97714988 - AluJo SINE Alu -1 311 1 695 291 62 43 chrX 64884950 64885417 -97714513 + L2 LINE L2 2282 2757 -557 293 302 36 69 chrX 64885451 64885640 -97714290 + L2 LINE L2 2853 3032 -240 1902 165 9 22 chrX 64885640 64885956 -97713974 - AluJo SINE Alu 0 312 1 293 302 36 69 chrX 64885956 64886041 -97713889 + L2 LINE L2 3032 3118 -154 1241 162 48 0 chrX 64886202 64886412 -97713518 + MER58A DNA MER1_type 2 221 -3 382 284 20 0 chrX 64886415 64886517 -97713413 + L2 LINE L2 3202 3305 -8 1045 149 60 42 chrX 64886794 64887009 -97712921 + MER20 DNA MER1_type 1 219 0 613 226 5 91 chrX 64887021 64887081 -97712849 + MER5B DNA MER1_type 5 69 -109 2608 67 0 3 chrX 64887081 64887393 -97712537 + AluY SINE Alu 1 311 0 613 226 5 91 chrX 64887393 64887518 -97712412 + MER5B DNA MER1_type 69 174 -4 489 288 42 101 chrX 64889173 64889771 -97710159 + L2 LINE L2 2698 3255 -17 269 159 16 0 chrX 64889771 64889834 -97710096 + GA-rich Low_complexity Low_complexity 1 64 0 263 337 111 23 chrX 64889918 64890090 -97709840 - L2 LINE L2 -938 2376 2190 638 220 6 40 chrX 64891008 64891181 -97708749 + MIR SINE MIR 54 220 -42 511 184 107 0 chrX 64892700 64892803 -97707127 + L2 LINE L2 3199 3312 -1 270 267 206 23 chrX 64892865 64892996 -97706934 + MIR SINE MIR 31 185 -77 189 128 0 51 chrX 64893067 64893106 -97706824 - L3 LINE CR1 -340 1237 1201 434 215 114 43 chrX 64893131 64893299 -97706631 - MIR SINE MIR -57 151 19 239 250 146 0 chrX 64893347 64893443 -97706487 + MIR3 SINE MIR 78 187 -21 1033 209 5 14 chrX 64893884 64894094 -97705836 + MIR SINE MIR 5 212 -50 871 214 5 61 chrX 64894107 64894209 -97705721 + MER58A DNA MER1_type 1 89 -2331 2086 141 7 0 chrX 64894209 64894681 -97705249 - AluSx SINE Alu 0 474 1 871 214 5 61 chrX 64894681 64894773 -97705157 + MER58A DNA MER1_type 89 185 -39 1777 165 0 0 chrX 64894781 64895047 -97704883 + AluJo SINE Alu 3 268 -44 213 94 0 0 chrX 64895061 64895093 -97704837 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 197 143 0 48 chrX 64895143 64895185 -97704745 + MIR SINE MIR 223 262 0 467 294 18 0 chrX 64895205 64895351 -97704579 - MIR SINE MIR -57 151 2 186 246 0 66 chrX 64896009 64896070 -97703860 + MIR3 SINE MIR 144 200 -8 305 62 21 0 chrX 64896227 64896275 -97703655 + (TG)n Simple_repeat Simple_repeat 1 49 0 709 297 25 25 chrX 64896676 64896915 -97703015 + MIR SINE MIR 21 259 -3 216 67 0 0 chrX 64896982 64897012 -97702918 + (TG)n Simple_repeat Simple_repeat 1 30 0 493 294 0 43 chrX 64898299 64898483 -97701447 + (ATGGTG)n Simple_repeat Simple_repeat 1 176 0 236 336 28 19 chrX 64898502 64898609 -97701321 + (ATGGTG)n Simple_repeat Simple_repeat 3 110 0 * 239 308 0 26 chrX 64898539 64898617 -97701313 + (TAG)n Simple_repeat Simple_repeat 2 77 0 191 256 6 39 chrX 64898620 64898800 -97701130 + (ATGGTG)n Simple_repeat Simple_repeat 4 177 0 359 336 133 19 chrX 64899081 64899337 -97700593 + L3b LINE CR1 1296 1580 -3 212 167 0 0 chrX 64899408 64899444 -97700486 + GA-rich Low_complexity Low_complexity 3 38 0 654 311 72 5 chrX 64899868 64900090 -97699840 + MIR SINE MIR 20 256 -6 497 237 33 46 chrX 64900306 64900458 -97699472 + MIR SINE MIR 72 221 -41 387 0 0 0 chrX 64901909 64901952 -97697978 + (TG)n Simple_repeat Simple_repeat 2 44 0 229 246 22 37 chrX 64902046 64902180 -97697750 + (GTGTG)n Simple_repeat Simple_repeat 2 133 0 467 219 0 22 chrX 64902552 64902730 -97697200 + GA-rich Low_complexity Low_complexity 2 175 0 266 318 9 18 chrX 64902847 64902957 -97696973 - L2 LINE L2 -159 3113 3005 326 314 25 17 chrX 64903123 64903241 -97696689 - L2 LINE L2 -2 3311 3193 1005 163 0 0 chrX 64903406 64903566 -97696364 + AluJb SINE Alu 152 311 -1 766 269 4 27 chrX 64903572 64903829 -97696101 - L2 LINE L2 -157 3156 2906 961 247 11 38 chrX 64904179 64904442 -97695488 - MIR SINE MIR 0 262 7 298 292 42 0 chrX 64904446 64904542 -97695388 - MIR SINE MIR -79 129 30 262 338 0 0 chrX 64905002 64905144 -97694786 + (TG)n Simple_repeat Simple_repeat 1 142 0 331 242 33 0 chrX 64905524 64905615 -97694315 - LTR33A LTR ERVL 0 523 430 942 263 4 13 chrX 64905617 64905853 -97694077 + MIR SINE MIR 29 262 0 469 307 16 42 chrX 64906236 64906425 -97693505 - MIR SINE MIR -65 197 14 194 314 145 16 chrX 64906445 64906569 -97693361 + L2 LINE L2 3124 3263 -9 865 302 42 4 chrX 64906584 64906849 -97693081 + Charlie8 DNA MER1_type 2 276 -2141 491 305 52 19 chrX 64907415 64907625 -97692305 - MIR SINE MIR -12 250 34 325 291 134 16 chrX 64907735 64907982 -97691948 + L2 LINE L2 2460 2735 -579 248 333 91 0 chrX 64908061 64908193 -97691737 + L2 LINE L2 2949 3092 -180 857 241 27 31 chrX 64908308 64908569 -97691361 + MIR SINE MIR 2 261 -1 302 265 24 0 chrX 64909299 64909382 -97690548 + MIR3 SINE MIR 109 193 -15 241 217 130 22 chrX 64909461 64909553 -97690377 + MIR SINE MIR 127 228 -34 415 274 195 32 chrX 64909687 64909877 -97690053 - MIR SINE MIR -31 231 11 378 344 25 6 chrX 64909963 64910126 -97689804 - MIR3 SINE MIR -15 193 28 452 260 0 0 chrX 64910541 64910641 -97689289 + MIR SINE MIR 158 257 -5 215 331 47 51 chrX 64910682 64910939 -97688991 + L2 LINE L2 2921 3176 -96 408 250 52 22 chrX 64910939 64911075 -97688855 + MIR SINE MIR 2 141 -121 206 352 19 9 chrX 64911680 64911788 -97688142 + MIR SINE MIR 36 144 -64 360 147 15 0 chrX 64911792 64911860 -97688070 + L2 LINE L2 2583 2651 -663 1707 206 22 22 chrX 64911860 64912219 -97687711 - MSTD LTR MaLR -3 393 35 976 167 0 0 chrX 64912223 64912367 -97687563 + AluJb SINE Alu 135 278 -34 183 42 0 0 chrX 64912370 64912394 -97687536 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1810 155 44 0 chrX 64912416 64912732 -97687198 - MSTD-int LTR MaLR 0 1735 1406 523 175 41 0 chrX 64912742 64912839 -97687091 - MSTC LTR MaLR -324 104 4 4459 113 170 92 chrX 64912840 64914260 -97685670 + pTR5 LTR ERV1 743 2438 0 641 246 18 0 chrX 64914273 64914440 -97685490 + L2 LINE L2 2644 2813 -501 956 186 6 0 chrX 64914442 64914614 -97685316 - MER5B DNA MER1_type -5 173 1 1629 226 45 87 chrX 64914615 64915147 -97684783 + L2 LINE L2 2804 3313 0 490 318 23 11 chrX 64915150 64915326 -97684604 + MIR SINE MIR 13 190 -72 6384 213 83 16 chrX 64915464 64917385 -97682545 + L1MB7 LINE L1 5 2040 -4606 1301 241 75 31 chrX 64917439 64918073 -97681857 + L1MB7 LINE L1 2260 2864 -3780 2017 134 0 21 chrX 64918073 64918400 -97681530 - AluJb SINE Alu 0 321 1 1301 241 75 31 chrX 64918400 64918716 -97681214 + L1MB7 LINE L1 2864 4879 -1765 701 93 0 0 chrX 64918717 64918824 -97681106 + AluY SINE Alu 205 311 0 4063 181 47 9 chrX 64918824 64919762 -97680168 + L1MB7 LINE L1 4869 5770 -906 323 44 22 0 chrX 64919762 64919807 -97680123 + (CA)n Simple_repeat Simple_repeat 2 47 0 4063 181 47 9 chrX 64919807 64920069 -97679861 + L1MB7 LINE L1 5770 6108 -568 967 217 4 16 chrX 64920069 64920298 -97679632 + L1MB7 LINE L1 6426 6666 -16 7336 204 48 41 chrX 64920305 64921516 -97678414 - L1MD2 LINE L1 -52 6190 4989 1918 137 51 7 chrX 64921516 64921808 -97678122 - AluJb SINE Alu -7 305 1 7336 204 48 41 chrX 64921808 64923618 -97676312 - L1MD2 LINE L1 -1253 4989 3140 823 147 7 7 chrX 64923621 64923757 -97676173 - L1MC1 LINE L1 -2 6611 6476 9165 206 51 23 chrX 64923761 64924872 -97675058 - L1MC1 LINE L1 -234 6379 5301 4912 144 5 20 chrX 64924872 64925234 -97674696 - L1MA4 LINE L1 -1 6299 5933 189 0 0 0 chrX 64925234 64925255 -97674675 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1798 140 25 18 chrX 64925255 64925534 -97674396 - AluSx SINE Alu -30 282 2 4912 144 5 20 chrX 64925534 64926012 -97673918 - L1MA4 LINE L1 -365 5935 5471 9165 206 51 23 chrX 64926012 64928343 -97671587 - L1MC1 LINE L1 -1312 5301 2838 1923 148 66 13 chrX 64928396 64928774 -97671156 - L1MC1 LINE L1 -4008 2418 2021 2717 175 42 74 chrX 64928774 64929568 -97670362 + Tigger3b DNA MER2_type 2 769 -462 13711 176 70 19 chrX 64929573 64930174 -97669756 + L1MA9 LINE L1 3320 3889 -3842 2127 147 0 0 chrX 64930174 64930486 -97669444 - AluSx SINE Alu 0 312 1 13711 176 70 19 chrX 64930486 64933077 -97666853 + L1MA9 LINE L1 3889 6792 -939 1759 203 28 8 chrX 64933077 64933432 -97666498 - MLT1A1 LTR MaLR 0 365 4 13711 176 70 19 chrX 64933432 64934418 -97665512 + L1MA9 LINE L1 6792 7726 -5 4165 204 4 17 chrX 64934430 64935360 -97664570 + L1M4 LINE L1 4369 5286 -860 744 145 0 35 chrX 64935362 64935507 -97664423 + MLT2C1 LTR ERVL 1 140 -257 679 179 5 33 chrX 64935509 64935693 -97664237 + GA-rich Low_complexity Low_complexity 2 180 0 2704 151 38 11 chrX 64935699 64936149 -97663781 - L1MC1 LINE L1 -5929 497 36 829 217 0 10 chrX 64936169 64936376 -97663554 - L1MDa LINE L1 -3005 3535 3331 6879 209 132 36 chrX 64936383 64938397 -97661533 - L1MDa LINE L1 -4202 2338 108 502 40 14 14 chrX 64938397 64938471 -97661459 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 6879 209 132 36 chrX 64938471 64938585 -97661345 - L1MDa LINE L1 -6432 108 6 195 266 0 31 chrX 64939582 64939646 -97660284 + MIR SINE MIR 90 151 -111 790 299 71 25 chrX 64940387 64940711 -97659219 - L2 LINE L2 0 3272 2934 261 265 71 0 chrX 64941354 64941452 -97658478 - MIR3 SINE MIR -54 154 50 257 273 176 36 chrX 64941519 64941684 -97658246 + MIR SINE MIR 15 202 -60 512 277 54 12 chrX 64942432 64942598 -97657332 + MIR SINE MIR 15 187 -75 180 245 0 19 chrX 64942633 64942686 -97657244 - MIR SINE MIR -103 159 108 328 230 14 0 chrX 64943778 64943852 -97656078 + MIR SINE MIR 188 262 0 328 279 13 58 chrX 64944898 64945052 -97654878 + MIR3 SINE MIR 51 197 -11 264 213 0 0 chrX 64945266 64945327 -97654603 + (TG)n Simple_repeat Simple_repeat 1 61 0 292 270 0 0 chrX 64945577 64945640 -97654290 - L2 LINE L2 0 3313 3251 192 314 0 0 chrX 64945642 64945712 -97654218 + MIR SINE MIR 182 251 -11 844 178 187 27 chrX 64945736 64945961 -97653969 - MIR SINE MIR 0 262 2 670 214 57 38 chrX 64946874 64947084 -97652846 + MIR SINE MIR 49 262 0 318 290 32 0 chrX 64947500 64947593 -97652337 + MIR SINE MIR 71 166 -96 504 328 29 4 chrX 64947684 64947925 -97652005 + L2 LINE L2 2509 2755 -559 603 242 9 58 chrX 64947966 64948189 -97651741 + MIR SINE MIR 21 232 -30 370 363 114 18 chrX 64948222 64948495 -97651435 + L2 LINE L2 2974 3272 0 256 264 14 14 chrX 64949045 64949117 -97650813 + GA-rich Low_complexity Low_complexity 2 73 0 309 327 42 5 chrX 64949627 64949841 -97650089 - MIR SINE MIR -11 251 30 254 239 11 119 chrX 64949954 64950130 -97649800 - MIR3 SINE MIR -16 192 36 1000 112 39 12 chrX 64951821 64952163 -97647767 + CT-rich Low_complexity Low_complexity 2 528 0 960 271 70 13 chrX 64953044 64953705 -97646225 - L2 LINE L2 -24 3289 2598 198 103 0 0 chrX 64954554 64954583 -97645347 + (CAA)n Simple_repeat Simple_repeat 2 30 0 759 265 14 0 chrX 64954584 64954795 -97645135 - MIR SINE MIR 0 262 49 333 214 10 41 chrX 64955602 64955700 -97644230 - MIR3 SINE MIR -53 155 61 587 290 28 42 chrX 64955816 64956030 -97643900 + MIR SINE MIR 31 241 -21 349 322 84 5 chrX 64957523 64957737 -97642193 - MIR SINE MIR -11 251 21 2301 100 0 0 chrX 64957781 64958070 -97641860 + AluSx SINE Alu 1 289 -23 861 250 10 5 chrX 64958070 64958278 -97641652 + MIR SINE MIR 22 230 -32 503 243 0 0 chrX 64958483 64958594 -97641336 + L1ME LINE L1 5619 5729 -392 297 0 0 0 chrX 64959127 64959160 -97640770 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1269 265 23 31 chrX 64959162 64959913 -97640017 - L2 LINE L2 -13 3300 2555 214 136 23 23 chrX 64959935 64959979 -97639951 + (CTATT)n Simple_repeat Simple_repeat 4 47 0 389 210 0 12 chrX 64960124 64960205 -97639725 + L2 LINE L2 3192 3271 -42 354 45 0 0 chrX 64960219 64960263 -97639667 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 1963 254 180 25 chrX 64961146 64961972 -97637958 + HAL1 LINE L1 1 954 -1553 656 304 29 10 chrX 64961977 64962184 -97637746 - MLT1I LTR MaLR -36 373 163 3038 233 93 32 chrX 64962197 64963169 -97636761 + HAL1 LINE L1 1431 2461 -46 273 288 0 23 chrX 64963189 64963321 -97636609 - L1MC/D LINE L1 -928 5500 5372 763 293 45 31 chrX 64963358 64963648 -97636282 - L2 LINE L2 0 3313 3020 973 278 28 132 chrX 64963791 64964813 -97635117 - L1MC/D LINE L1 -913 5302 4281 12984 176 49 51 chrX 64964813 64965403 -97634527 - L1MC3 LINE L1 0 7785 7195 288 243 36 54 chrX 64965403 64965514 -97634416 - MLT1F1 LTR MaLR -434 133 25 12984 176 49 51 chrX 64965514 64969612 -97630318 - L1MC3 LINE L1 -590 7195 3025 1659 195 37 3 chrX 64969613 64969936 -97629994 + MER7A DNA MER2_type 1 332 -14 780 165 33 11 chrX 64969942 64970124 -97629806 - L1MC3 LINE L1 -3123 3023 2838 445 266 93 72 chrX 64970117 64970601 -97629329 - L1MC/D LINE L1 -1829 4386 3893 * 318 200 223 31 chrX 64970610 64970740 -97629190 + MIR SINE MIR 49 203 -59 212 114 45 23 chrX 64970747 64970791 -97629139 + (CATA)n Simple_repeat Simple_repeat 3 47 0 2046 259 75 18 chrX 64971099 64971660 -97628270 - MLT1E LTR MaLR 0 593 1 698 304 114 28 chrX 64971663 64973037 -97626893 - L1MEc LINE L1 -2634 3581 2114 345 327 80 0 chrX 64974280 64974393 -97625537 + MER91C DNA MER1_type 2 123 -17 267 312 83 18 chrX 64974572 64974681 -97625249 - MIR SINE MIR -136 126 11 1271 288 135 6 chrX 64974853 64975363 -97624567 - MLT1K LTR MaLR 0 588 13 361 200 0 0 chrX 64975378 64975443 -97624487 - MIR SINE MIR -63 145 81 642 272 0 0 chrX 64975624 64975760 -97624170 + MIR3 SINE MIR 30 165 -43 263 253 221 0 chrX 64976670 64976765 -97623165 - L3b LINE CR1 -200 1383 1268 261 213 49 16 chrX 64977916 64977977 -97621953 + L3b LINE CR1 1330 1392 -191 373 333 44 20 chrX 64978225 64978402 -97621528 - MIR3 SINE MIR -61 147 5 367 302 127 28 chrX 64978958 64979170 -97620760 - MIR SINE MIR -24 238 6 699 239 124 17 chrX 64980737 64980971 -97618959 - MIR SINE MIR 0 262 4 303 327 164 14 chrX 64981321 64981602 -97618328 - L2 LINE L2 -687 2627 2305 198 328 0 17 chrX 64981743 64981801 -97618129 - L2 LINE L2 -556 2758 2702 384 269 39 15 chrX 64982669 64982799 -97617131 - MIR3 SINE MIR -18 190 58 269 224 0 9 chrX 64985603 64985719 -97614211 + CT-rich Low_complexity Low_complexity 1 115 0 327 315 79 24 chrX 64986227 64986354 -97613576 + L2 LINE L2 3133 3266 -6 521 217 80 36 chrX 64986366 64986504 -97613426 - L2 LINE L2 0 3313 3170 915 232 5 0 chrX 64987015 64987205 -97612725 + MER63A DNA MER1_type 2 192 -18 354 23 0 0 chrX 64987379 64987422 -97612508 + (TG)n Simple_repeat Simple_repeat 2 44 0 1608 196 44 3 chrX 64987478 64987774 -97612156 + AluJo SINE Alu 1 308 -4 807 204 23 6 chrX 64987775 64987947 -97611983 - MIR SINE MIR -8 254 80 276 354 16 4 chrX 64989011 64989155 -97610775 + MIR SINE MIR 1 146 -62 285 293 16 81 chrX 64989455 64989578 -97610352 + L2 LINE L2 3154 3268 -4 * 458 216 93 67 chrX 64989573 64989767 -97610163 - MIR SINE MIR -58 204 6 217 320 24 48 chrX 64990136 64990261 -97609669 - L3b LINE CR1 -201 1382 1261 326 300 40 0 chrX 64990384 64990484 -97609446 + MIR SINE MIR 47 150 -112 603 240 136 22 chrX 64991275 64991767 -97608163 + L1ME4a LINE L1 5452 6037 -84 678 240 7 13 chrX 64991794 64991944 -97607986 - MIR SINE MIR -40 222 74 300 164 41 14 chrX 64991945 64992018 -97607912 + L1ME4a LINE L1 6047 6121 0 420 307 29 7 chrX 64992956 64993096 -97606834 + MIR SINE MIR 45 187 -75 403 246 98 66 chrX 64993366 64993549 -97606381 - L3 LINE CR1 -45 1532 1344 268 258 90 11 chrX 64994154 64994243 -97605687 - MIR SINE MIR -132 130 35 360 155 0 0 chrX 64995158 64995229 -97604701 + (TG)n Simple_repeat Simple_repeat 1 71 0 366 258 57 40 chrX 64995915 64996039 -97603891 - MIR SINE MIR -65 143 18 584 273 143 60 chrX 64996100 64996607 -97603323 + L2 LINE L2 2712 3238 -34 909 222 70 4 chrX 64996631 64996861 -97603069 - MIR SINE MIR -6 256 12 442 240 88 0 chrX 64997199 64997324 -97602606 + MIR SINE MIR 59 194 -68 528 97 35 18 chrX 64998082 64998195 -97601735 + CT-rich Low_complexity Low_complexity 4 118 0 216 149 0 0 chrX 64998247 64998294 -97601636 + (CTCG)n Simple_repeat Simple_repeat 2 48 0 427 326 33 33 chrX 64998411 64998592 -97601338 + MIR3 SINE MIR 19 199 -9 4652 238 56 24 chrX 64999440 65001047 -97598883 - L1MC/D LINE L1 -534 5636 4020 1963 116 3 81 chrX 65001047 65001367 -97598563 + AluSx SINE Alu 1 295 -17 4652 238 56 24 chrX 65001367 65001649 -97598281 - L1MC/D LINE L1 -2150 4020 3749 213 39 0 0 chrX 65001650 65001676 -97598254 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 821 233 0 0 chrX 65001676 65001822 -97598108 - FRAM SINE Alu -30 146 1 5042 163 42 20 chrX 65001831 65002009 -97597921 - L1MD1 LINE L1 -1 6241 6069 1634 157 20 57 chrX 65002009 65002145 -97597785 + AluJo SINE Alu 15 154 -158 2204 87 4 0 chrX 65002145 65002420 -97597510 + AluSq SINE Alu 21 296 -17 1634 157 20 57 chrX 65002420 65002583 -97597347 + AluJo SINE Alu 154 303 -9 5042 163 42 20 chrX 65002583 65003760 -97596170 - L1MD1 LINE L1 -173 6069 4920 1954 137 3 14 chrX 65003760 65004082 -97595848 + AluJb SINE Alu 1 319 0 5042 163 42 20 chrX 65004082 65004145 -97595785 - L1MD1 LINE L1 -1322 4920 4860 189 0 0 0 chrX 65004145 65004166 -97595764 + (TC)n Simple_repeat Simple_repeat 2 22 0 5042 163 42 20 chrX 65004166 65004303 -97595627 - L1MD1 LINE L1 -1382 4860 4644 632 312 64 14 chrX 65004692 65004910 -97595020 + MIR SINE MIR 20 248 -14 466 281 102 0 chrX 65005093 65005221 -97594709 - MIR SINE MIR -78 184 44 945 251 68 10 chrX 65005682 65005977 -97593953 - L2 LINE L2 -4 3309 2998 4059 29 0 6 chrX 65006077 65006554 -97593376 + L1PA3 LINE L1 5682 6155 0 609 193 143 0 chrX 65006571 65006711 -97593219 - L1MC3 LINE L1 -437 7348 7189 270 329 0 0 chrX 65006712 65006791 -97593139 - MLT1F1 LTR MaLR -450 117 39 237 77 0 0 chrX 65006791 65006830 -97593100 + L1MC4a LINE L1 6927 6965 -843 1046 112 68 0 chrX 65006831 65006992 -97592938 + L1PA15 LINE L1 5988 6159 -6 3254 220 41 6 chrX 65006993 65007771 -97592159 + L1MC4a LINE L1 7003 7807 -1 405 0 0 0 chrX 65008151 65008196 -97591734 + (TG)n Simple_repeat Simple_repeat 2 46 0 271 342 7 47 chrX 65008712 65008861 -97591069 - L3 LINE CR1 -20 1557 1415 210 37 0 0 chrX 65009516 65009543 -97590387 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1785 150 29 11 chrX 65009555 65009835 -97590095 - AluJb SINE Alu -23 289 5 184 242 194 0 chrX 65009860 65009922 -97590008 + MIR SINE MIR 77 150 -112 228 233 0 0 chrX 65010003 65010046 -97589884 + L2 LINE L2 3137 3179 -93 638 258 44 13 chrX 65010543 65010702 -97589228 - MIR SINE MIR -52 210 47 300 266 231 9 chrX 65010853 65010981 -97588949 - MIR SINE MIR -92 116 10 565 326 76 17 chrX 65011366 65011602 -97588328 - MIR SINE MIR -12 250 1 185 333 0 43 chrX 65012176 65012245 -97587685 - MIR SINE MIR -168 94 29 1643 200 38 18 chrX 65012245 65012585 -97587345 - MLT1A1 LTR MaLR 0 365 19 235 267 10 99 chrX 65012761 65012862 -97587068 - L3 LINE CR1 -11 1566 1475 223 345 50 7 chrX 65012874 65013013 -97586917 - L2 LINE L2 -292 2980 2836 410 308 8 8 chrX 65013122 65013242 -97586688 - MIR3 SINE MIR -15 193 74 260 222 14 83 chrX 65013386 65013458 -97586472 + L2 LINE L2 3246 3312 -1 630 307 27 0 chrX 65013500 65013650 -97586280 + MER91A DNA MER1_type 43 196 0 190 316 66 0 chrX 65013806 65013882 -97586048 - L3 LINE CR1 -597 980 900 347 333 19 0 chrX 65014016 65014124 -97585806 - MIR SINE MIR -68 140 31 484 217 30 101 chrX 65014981 65015179 -97584751 + MIR3 SINE MIR 22 205 -3 1252 153 0 79 chrX 65415285 65415513 -97184417 - AluJo SINE Alu -102 210 1 904 95 0 7 chrX 65415513 65415650 -97184280 - Tigger1 DNA MER2_type -581 1837 1702 1038 143 77 0 chrX 65415671 65415839 -97184091 + AluJb SINE Alu 129 309 -3 285 149 0 0 chrX 65415843 65415890 -97184040 - Tigger1 DNA MER2_type -1943 475 429 369 0 0 0 chrX 65415966 65416007 -97183923 + (TC)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chrX 65416006 65416030 -97183900 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 652 150 144 6 chrX 65416078 65416238 -97183692 - L1MD2 LINE L1 -14 6345 6164 862 189 0 0 chrX 65416252 65416395 -97183535 - FLAM_C SINE Alu 0 143 1 2349 105 0 0 chrX 65416562 65416858 -97183072 - AluSx SINE Alu -16 296 1 1149 224 66 21 chrX 65416913 65417136 -97182794 - L1MC5 LINE L1 -530 7431 7183 2369 97 0 0 chrX 65417136 65417434 -97182496 - AluSx SINE Alu -14 298 1 1149 224 66 21 chrX 65417434 65417589 -97182341 - L1MC5 LINE L1 -778 7183 7036 1311 144 75 47 chrX 65417593 65417913 -97182017 - L1MA7 LINE L1 0 6291 5963 1522 171 44 0 chrX 65418014 65418140 -97181790 - L1P LINE L1 -1612 4534 4415 324 0 0 0 chrX 65418140 65418176 -97181754 + (TG)n Simple_repeat Simple_repeat 1 36 0 1522 171 44 0 chrX 65418176 65418365 -97181565 - L1P LINE L1 -1731 4415 4205 922 82 0 15 chrX 65418388 65418523 -97181407 + FLAM_C SINE Alu 1 133 0 371 307 40 45 chrX 65418597 65418799 -97181131 + L1ME3A LINE L1 5963 6163 -7 421 277 38 1 chrX 65418832 65418991 -97180939 - L1ME1 LINE L1 -154 6012 5856 198 0 0 0 chrX 65419220 65419242 -97180688 + (A)n Simple_repeat Simple_repeat 1 22 0 308 332 19 51 chrX 65419706 65419920 -97180010 - L1ME3A LINE L1 -1 6169 5963 607 230 14 43 chrX 65419973 65420182 -97179748 - L1ME3A LINE L1 -203 5967 5765 303 284 93 0 chrX 65420356 65420571 -97179359 + L1M4 LINE L1 3083 3317 -2829 2040 153 56 32 chrX 65420580 65420991 -97178939 - MSTA LTR MaLR -7 421 1 844 260 65 90 chrX 65421076 65421400 -97178530 + L1MC4 LINE L1 7297 7599 -443 1860 135 0 10 chrX 65421400 65421689 -97178241 + AluJb SINE Alu 1 286 -26 844 260 65 90 chrX 65421689 65422011 -97177919 + L1MC4 LINE L1 7599 7927 -115 273 273 9 45 chrX 65422020 65422130 -97177800 + L1MC4 LINE L1 7912 8017 -25 611 326 60 29 chrX 65422163 65422748 -97177182 + L1M4 LINE L1 3342 3944 -2202 793 253 4 65 chrX 65422820 65423065 -97176865 - L1ME1 LINE L1 -63 6103 5874 256 250 0 0 chrX 65423189 65423257 -97176673 + (TG)n Simple_repeat Simple_repeat 2 69 0 214 231 0 0 chrX 65425343 65425382 -97174548 + (CG)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chrX 65425382 65425413 -97174517 + (CA)n Simple_repeat Simple_repeat 1 31 0 248 238 67 76 chrX 65428844 65428949 -97170981 - MIR SINE MIR -52 210 107 210 254 18 0 chrX 65430617 65430672 -97169258 + CT-rich Low_complexity Low_complexity 1 56 0 267 31 0 0 chrX 65436590 65436622 -97163308 + (CA)n Simple_repeat Simple_repeat 2 33 0 810 249 4 65 chrX 65436746 65436991 -97162939 + L1ME1 LINE L1 5874 6103 -63 561 300 55 72 chrX 65437064 65437414 -97162516 - L1M4 LINE L1 -2202 3944 3607 2574 56 0 25 chrX 65437414 65437733 -97162197 - AluY SINE Alu 0 311 1 561 300 55 72 chrX 65437733 65437995 -97161935 - L1M4 LINE L1 -2539 3607 3342 279 288 0 68 chrX 65438017 65438135 -97161795 - L1MC4 LINE L1 -15 8027 7918 413 267 49 70 chrX 65438190 65438475 -97161455 - L1MC4 LINE L1 -138 7904 7626 862 147 13 0 chrX 65438475 65438625 -97161305 - AluJb SINE Alu -26 286 135 2151 51 0 4 chrX 65438713 65438967 -97160963 - AluY SINE Alu -9 302 50 761 251 24 28 chrX 65438989 65439240 -97160690 - L1MC4 LINE L1 -496 7546 7297 2198 151 52 10 chrX 65439325 65439729 -97160201 + MSTA LTR MaLR 1 421 -7 384 275 106 3 chrX 65439738 65440040 -97159890 - L1M4 LINE L1 -2829 3317 2978 636 254 25 39 chrX 65440046 65440329 -97159601 + L1ME3A LINE L1 5689 5967 -203 308 332 19 51 chrX 65440382 65440596 -97159334 + L1ME3A LINE L1 5963 6169 -1 180 0 0 0 chrX 65441060 65441080 -97158850 + (T)n Simple_repeat Simple_repeat 1 20 0 421 277 38 1 chrX 65441309 65441468 -97158462 + L1ME1 LINE L1 5856 6012 -154 354 302 37 48 chrX 65441501 65441690 -97158240 - L1ME3A LINE L1 -7 6163 5977 6810 80 0 4 chrX 65441780 65442547 -97157383 + L1PA13 LINE L1 4205 4974 -1189 2698 96 3 6 chrX 65442547 65442911 -97157019 - THE1B LTR MaLR -1 363 1 6810 80 0 4 chrX 65442911 65444099 -97155831 + L1PA13 LINE L1 4974 6155 -8 515 168 208 8 chrX 65444201 65444326 -97155604 - L2 LINE L2 -950 2364 2215 501 357 19 16 chrX 65445061 65445431 -97154499 - HERVK11 LTR ERVK -315 6522 6152 274 312 39 38 chrX 65446720 65447100 -97152830 - HERVK11 LTR ERVK -2043 5200 4834 259 279 0 0 chrX 65447495 65447563 -97152367 - HERVK11 LTR ERVK -2962 3875 3808 396 0 0 0 chrX 65449651 65449695 -97150235 + (A)n Simple_repeat Simple_repeat 1 44 0 261 211 0 0 chrX 65450003 65450060 -97149870 - HERVK11 LTR ERVK -7618 335 279 3451 170 21 14 chrX 65450766 65451429 -97148501 - L1MB2 LINE L1 -4 6167 5500 3601 163 13 12 chrX 65451507 65452183 -97147747 - L1MA8 LINE L1 -24 6267 5591 6339 144 30 15 chrX 65452190 65452421 -97147509 - L1MA4A LINE L1 -7 6296 6070 2059 128 0 31 chrX 65452421 65452742 -97147188 - AluJo SINE Alu -1 311 1 6339 144 30 15 chrX 65452742 65454580 -97145350 - L1MA4A LINE L1 -233 6070 4194 1715 151 47 4 chrX 65454580 65454859 -97145071 - AluJb SINE Alu -20 292 2 6339 144 30 15 chrX 65454859 65454985 -97144945 - L1MA4A LINE L1 -2109 4194 4071 212 280 0 0 chrX 65455027 65455077 -97144853 - L2 LINE L2 -1142 2172 2123 426 167 0 24 chrX 65455085 65455224 -97144706 + MER21B LTR ERV1 313 488 -375 1754 167 28 3 chrX 65456001 65456289 -97143641 - AluJb SINE Alu -17 295 1 1261 263 109 22 chrX 65456299 65457018 -97142912 - L1ME3A LINE L1 -211 5951 5170 441 181 95 9 chrX 65457016 65457132 -97142798 - L1ME3 LINE L1 -6 6156 6031 * 397 196 26 143 chrX 65457282 65457471 -97142459 - MER21B LTR ERV1 -599 264 98 364 193 88 35 chrX 65457442 65457556 -97142374 - MER77 LTR ERV1 -404 201 82 * 2297 166 56 29 chrX 65457678 65458123 -97141807 + MSTB2 LTR MaLR 1 457 0 443 90 134 0 chrX 65458163 65458230 -97141700 + MADE1 DNA Mariner 5 80 0 584 144 0 0 chrX 65458354 65458444 -97141486 + FLAM_C SINE Alu 36 125 -18 3838 249 33 33 chrX 65458447 65459682 -97140248 + L1M4 LINE L1 3467 4701 -1445 2273 86 0 4 chrX 65459682 65459993 -97139937 + AluSc SINE Alu 6 315 0 3838 249 33 33 chrX 65459993 65460016 -97139914 + L1M4 LINE L1 4701 4723 -1423 1721 134 3 69 chrX 65460016 65460307 -97139623 - AluJo SINE Alu -3 309 38 3838 249 33 33 chrX 65460307 65460442 -97139488 + L1M4 LINE L1 4722 4862 -1284 4071 199 30 28 chrX 65460451 65460737 -97139193 - L1MB5 LINE L1 -9 6165 5881 2148 120 0 16 chrX 65460737 65461046 -97138884 - AluJb SINE Alu -8 304 1 4071 199 30 28 chrX 65461046 65462082 -97137848 - L1MB5 LINE L1 -293 5881 4843 1758 235 162 60 chrX 65462081 65463149 -97136781 + L1M3e LINE L1 1200 2386 -5149 * 2129 101 15 58 chrX 65463149 65463476 -97136454 - AluSq SINE Alu 0 313 1 1758 235 162 60 chrX 65463476 65463705 -97136225 + L1M3e LINE L1 2386 2590 -4945 1896 171 0 31 chrX 65463736 65464058 -97135872 - AluJb SINE Alu 0 312 1 6473 220 38 15 chrX 65464058 65466190 -97133740 + L1M3e LINE L1 3008 5195 -2370 10827 147 23 78 chrX 65466238 65468392 -97131538 + L1M1 LINE L1 296 2331 -5234 370 248 32 32 chrX 65468392 65468517 -97131413 + L1M1 LINE L1 15 139 -7426 * 2721 182 8 9 chrX 65468496 65469492 -97130438 + L1M1 LINE L1 3165 4160 -3405 1120 137 6 16 chrX 65469493 65469513 -97130417 - AluSg/x SINE Alu -2 310 291 2319 100 0 31 chrX 65469513 65469833 -97130097 - AluSg SINE Alu 0 310 1 1120 137 6 16 chrX 65469833 65469995 -97129935 - AluSg/x SINE Alu -21 291 130 6152 113 46 35 chrX 65469996 65472443 -97127487 - SVA Other Other -518 1386 1 488 238 128 0 chrX 65472464 65472698 -97127232 + L1M1 LINE L1 4162 4461 -3104 1453 141 99 244 chrX 65472704 65473316 -97126614 + L1M1 LINE L1 4982 5484 -2081 377 218 26 0 chrX 65473316 65473394 -97126536 - MLT2B3 LTR ERVL -113 441 362 1453 141 99 244 chrX 65473394 65473702 -97126228 + L1M1 LINE L1 5484 5835 -1730 * 3246 164 20 7 chrX 65473700 65474254 -97125676 - L1M3f LINE L1 -4511 817 257 2373 98 3 0 chrX 65474257 65474562 -97125368 + AluSx SINE Alu 7 312 0 1051 101 27 0 chrX 65475082 65475230 -97124700 - AluSc SINE Alu -6 303 152 198 191 0 0 chrX 65478487 65478529 -97121401 + GA-rich Low_complexity Low_complexity 2 43 0 189 175 0 0 chrX 65482048 65482088 -97117842 + CT-rich Low_complexity Low_complexity 2 41 0 405 0 0 0 chrX 65485891 65485936 -97113994 + (TG)n Simple_repeat Simple_repeat 1 45 0 276 143 0 0 chrX 65488012 65488068 -97111862 + (CA)n Simple_repeat Simple_repeat 2 57 0 864 241 17 51 chrX 65488159 65488434 -97111496 + L1ME1 LINE L1 5852 6112 -54 648 314 68 34 chrX 65488496 65489085 -97110845 - L1M4 LINE L1 -2196 3950 3342 360 300 0 33 chrX 65489107 65489227 -97110703 - L1MC4 LINE L1 -15 8027 7912 967 285 56 73 chrX 65489236 65489557 -97110373 - L1MC4 LINE L1 -115 7927 7621 1850 136 0 30 chrX 65489557 65489852 -97110078 - AluJb SINE Alu -26 286 1 967 285 56 73 chrX 65489852 65490172 -97109758 - L1MC4 LINE L1 -421 7621 7297 2240 157 58 5 chrX 65490259 65490655 -97109275 + MSTA LTR MaLR 3 419 -9 340 261 108 0 chrX 65490665 65490887 -97109043 - L1M4 LINE L1 -2828 3318 3073 2609 83 9 0 chrX 65490914 65491264 -97108666 + THE1A LTR MaLR 3 355 0 7182 97 11 12 chrX 65491264 65491707 -97108223 + THE1A-int LTR MaLR 1 443 -1137 10224 49 1 0 chrX 65491707 65493816 -97106114 + L1PA5 LINE L1 4049 6166 0 7182 97 11 12 chrX 65493816 65494404 -97105526 + THE1A-int LTR MaLR 443 1032 -548 1591 164 51 11 chrX 65495493 65495768 -97104162 + AluJb SINE Alu 1 286 -26 261 0 0 0 chrX 65495768 65495797 -97104133 + (CA)n Simple_repeat Simple_repeat 2 30 0 1041 177 0 0 chrX 65496035 65496199 -97103731 - FRAM SINE Alu -12 164 1 300 298 38 38 chrX 65496345 65496476 -97103454 - MIR3 SINE MIR -2 206 76 211 331 223 8 chrX 65496787 65496917 -97103013 + MIR3 SINE MIR 2 159 -49 1277 191 40 105 chrX 65497040 65497439 -97102491 + MLT1A2 LTR MaLR 1 373 -1 388 217 66 127 chrX 65497723 65497815 -97102115 + MIR SINE MIR 52 148 -114 2409 109 0 0 chrX 65497815 65498126 -97101804 + AluSx SINE Alu 1 311 -1 388 217 66 127 chrX 65498126 65498145 -97101785 + MIR SINE MIR 148 167 -95 1954 145 35 27 chrX 65498145 65498517 -97101413 - THE1C LTR MaLR 0 375 1 388 217 66 127 chrX 65498517 65498570 -97101360 + MIR SINE MIR 167 207 -55 361 203 35 76 chrX 65498576 65498760 -97101170 - L1MC/D LINE L1 -365 5756 5615 709 299 59 22 chrX 65498773 65499131 -97100799 - HsTC2 DNA Tc2 -102 1796 1250 294 285 92 15 chrX 65499129 65499259 -97100671 - HsTC2 DNA Tc2 -1757 141 2 * 2233 200 80 20 chrX 65499319 65499791 -97100139 - L1MA9 LINE L1 -38 6274 5759 318 26 0 0 chrX 65499791 65499830 -97100100 + (TG)n Simple_repeat Simple_repeat 1 39 0 2233 200 80 20 chrX 65499830 65499947 -97099983 - L1MA9 LINE L1 -553 5759 5650 3170 170 8 55 chrX 65499948 65500055 -97099875 + L1 LINE L1 4432 4543 -1603 2152 139 0 0 chrX 65500055 65500349 -97099581 + AluJb SINE Alu 1 294 -18 3170 170 8 55 chrX 65500349 65500453 -97099477 + L1 LINE L1 4543 4650 -1496 2021 177 0 0 chrX 65500453 65500764 -97099166 + AluJo SINE Alu 1 311 -1 3170 170 8 55 chrX 65500764 65501191 -97098739 + L1 LINE L1 4650 5030 -1116 2315 94 3 3 chrX 65501191 65501489 -97098441 + AluSp SINE Alu 3 300 -13 3170 170 8 55 chrX 65501489 65501623 -97098307 + L1 LINE L1 5030 5169 -977 1485 85 29 4 chrX 65501638 65502191 -97097739 + L1PB3 LINE L1 5530 6147 -7 2056 181 42 60 chrX 65502197 65502585 -97097345 + L1 LINE L1 2897 3290 -2856 2020 123 45 0 chrX 65502585 65502877 -97097053 + AluSg SINE Alu 3 307 -3 2056 181 42 60 chrX 65502877 65502931 -97096999 + L1 LINE L1 3290 3343 -2803 2470 91 0 0 chrX 65502931 65503240 -97096690 - AluSc SINE Alu 0 309 1 2056 181 42 60 chrX 65503240 65503415 -97096515 + L1 LINE L1 3343 3504 -2642 846 103 0 9 chrX 65503421 65503537 -97096393 + AluSq/x SINE Alu 1 115 -197 593 345 116 10 chrX 65503597 65504003 -97095927 - L2 LINE L2 -665 2649 2201 2295 85 0 3 chrX 65504013 65504335 -97095595 + AluSg SINE Alu 1 321 0 328 266 16 73 chrX 65504337 65504419 -97095511 + MER58 DNA MER1_type 2 87 -254 180 0 0 0 chrX 65504419 65504439 -97095491 + (TA)n Simple_repeat Simple_repeat 2 21 0 2117 139 0 3 chrX 65504439 65504733 -97095197 - AluSx SINE Alu -19 293 1 328 266 16 73 chrX 65504733 65504773 -97095157 + MER58 DNA MER1_type 85 118 -223 * 436 204 32 0 chrX 65504753 65504846 -97095084 + MER58 DNA MER1_type 2319 2414 -6 189 336 89 31 chrX 65504853 65505209 -97094721 - L2 LINE L2 -1105 2209 1740 2272 96 0 0 chrX 65505209 65505491 -97094439 + AluSg SINE Alu 11 292 -18 189 336 89 31 chrX 65505491 65505658 -97094272 - L2 LINE L2 -1574 1740 1584 2356 108 0 3 chrX 65506073 65506378 -97093552 + AluSq SINE Alu 1 304 -9 376 236 174 0 chrX 65506540 65506682 -97093248 - MIR SINE MIR -70 138 25 293 257 105 8 chrX 65506988 65507121 -97092809 - MIR SINE MIR -63 145 38 893 156 0 0 chrX 65507401 65507536 -97092394 + AluSg/x SINE Alu 173 307 -3 303 340 123 20 chrX 65507780 65507983 -97091947 - L2 LINE L2 -494 2820 2597 245 296 74 0 chrX 65508059 65508140 -97091790 - L1ME LINE L1 -535 5635 5549 1357 124 0 15 chrX 65508959 65509160 -97090770 + AluSg/x SINE Alu 115 312 0 621 124 159 0 chrX 65509194 65509307 -97090623 + FLAM_C SINE Alu 1 131 -2 1808 178 48 84 chrX 65509425 65509841 -97090089 + MLT1D LTR MaLR 1 396 -109 2204 98 0 50 chrX 65509841 65510159 -97089771 - AluSq SINE Alu -11 302 1 1808 178 48 84 chrX 65510159 65510266 -97089664 + MLT1D LTR MaLR 396 505 0 561 268 27 35 chrX 65510541 65510866 -97089064 + MLT1I LTR MaLR 42 402 -7 1822 161 3 23 chrX 65510882 65511181 -97088749 - AluJo SINE Alu -19 293 1 346 298 0 19 chrX 65512063 65512167 -97087763 + MER5B DNA MER1_type 2 103 -75 1579 210 119 49 chrX 65512473 65512945 -97086985 + MLT1D LTR MaLR 1 505 0 1822 153 7 21 chrX 65513196 65513395 -97086535 - AluJb SINE Alu 0 304 109 3852 93 35 4 chrX 65513395 65513567 -97086363 - MER41A LTR ERV1 0 554 389 2149 115 0 0 chrX 65513567 65513889 -97086041 - AluSx SINE Alu 0 312 5 3852 93 35 4 chrX 65513889 65514253 -97085677 - MER41A LTR ERV1 -165 389 1 1822 153 7 21 chrX 65514253 65514361 -97085569 - AluJb SINE Alu -195 109 1 23 33 0 0 chrX 65514361 65514391 -97085539 + AT_rich Low_complexity Low_complexity 1 30 0 435 313 57 0 chrX 65514396 65514572 -97085358 - L2 LINE L2 -18 3295 3110 2414 89 0 35 chrX 65514572 65514885 -97085045 + AluSx SINE Alu 1 302 -10 314 146 0 55 chrX 65514886 65514941 -97084989 - L1MC4 LINE L1 -1339 6703 6652 551 254 37 107 chrX 65515003 65515247 -97084683 - MIR SINE MIR -35 227 1 2234 114 3 0 chrX 65516456 65516764 -97083166 - AluSp SINE Alu -4 309 1 884 257 50 5 chrX 65517118 65517336 -97082594 + MIR SINE MIR 15 242 -20 2126 121 10 10 chrX 65517483 65517790 -97082140 - AluSx SINE Alu -5 307 1 556 200 8 50 chrX 65517814 65517934 -97081996 - MIR SINE MIR -146 116 2 2332 96 3 0 chrX 65518983 65519274 -97080656 - AluSg SINE Alu -18 292 1 1077 214 54 33 chrX 65519278 65519305 -97080625 - L1MC4 LINE L1 -1 8041 8016 518 41 0 184 chrX 65519305 65519403 -97080527 + MADE1 DNA Mariner 1 80 0 1077 214 54 33 chrX 65519403 65519706 -97080224 - L1MC4 LINE L1 -26 8016 7704 1947 152 0 34 chrX 65519718 65520041 -97079889 - AluJo SINE Alu 0 312 1 2507 100 0 0 chrX 65520049 65520359 -97079571 - AluSg SINE Alu 0 310 1 741 197 48 53 chrX 65520531 65520719 -97079211 + MIR SINE MIR 65 251 -11 1722 142 26 42 chrX 65520723 65521034 -97078896 + AluJo SINE Alu 4 309 -3 289 310 103 0 chrX 65521307 65521423 -97078507 + MIR SINE MIR 77 204 -58 280 304 27 34 chrX 65521617 65521765 -97078165 + L2 LINE L2 2914 3060 -212 602 234 57 66 chrX 65522793 65523007 -97076923 - MIR SINE MIR -24 238 32 326 301 21 11 chrX 65523246 65523339 -97076591 - MIR SINE MIR -131 131 38 1307 98 22 33 chrX 65523606 65523789 -97076141 - AluSg/x SINE Alu 0 310 130 195 42 0 0 chrX 65523789 65523813 -97076117 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2428 77 0 0 chrX 65523813 65524098 -97075832 - AluSp SINE Alu -28 285 1 2136 113 69 9 chrX 65524149 65524467 -97075463 + MER1B DNA MER1_type 1 337 0 261 43 64 0 chrX 65525052 65525099 -97074831 + CT-rich Low_complexity Low_complexity 1 50 0 277 303 92 38 chrX 65525449 65525634 -97074296 - L1ME3A LINE L1 -208 5962 5768 198 346 0 13 chrX 65525776 65525854 -97074076 + MIR SINE MIR 161 237 -25 22 0 0 0 chrX 65525937 65525959 -97073971 + AT_rich Low_complexity Low_complexity 1 22 0 1755 180 3 3 chrX 65525962 65526251 -97073679 - AluJo SINE Alu -23 289 1 253 231 245 49 chrX 65526849 65526992 -97072938 + MIR3 SINE MIR 11 181 -27 23 0 0 0 chrX 65528165 65528188 -97071742 + GC_rich Low_complexity Low_complexity 1 23 0 185 289 35 84 chrX 65529705 65529847 -97070083 - L2 LINE L2 -636 2678 2544 1907 188 92 15 chrX 65530283 65530466 -97069464 + MLT1D LTR MaLR 1 169 -336 2040 148 7 0 chrX 65530466 65530771 -97069159 + AluSx SINE Alu 2 308 -4 1907 188 92 15 chrX 65530771 65530876 -97069054 + MLT1D LTR MaLR 169 265 -240 2267 113 0 0 chrX 65530876 65531178 -97068752 + AluSx SINE Alu 1 302 -10 1907 188 92 15 chrX 65531178 65531357 -97068573 + MLT1D LTR MaLR 265 505 0 2308 105 6 16 chrX 65532852 65533167 -97066763 - AluSx SINE Alu 0 312 1 1074 173 0 0 chrX 65533609 65533771 -97066159 - FAM SINE Alu -13 162 1 2358 89 7 7 chrX 65534522 65534826 -97065104 - AluSq SINE Alu -9 304 1 911 180 6 18 chrX 65535501 65535668 -97064262 - MIR SINE MIR -19 243 79 279 287 84 127 chrX 65535665 65536034 -97063896 + L2 LINE L2 2914 3266 -6 * 235 384 78 4 chrX 65536274 65536519 -97063411 + L2 LINE L2 2084 2346 -968 2553 60 3 0 chrX 65536587 65536888 -97063042 + AluY SINE Alu 1 302 -9 184 341 0 12 chrX 65537213 65537298 -97062632 + L2 LINE L2 2871 2954 -318 295 247 133 18 chrX 65537334 65537527 -97062403 - MIR SINE MIR -3 259 38 240 246 14 29 chrX 65539030 65539099 -97060831 + Charlie8 DNA MER1_type 8 75 -2342 265 303 92 106 chrX 65539936 65540296 -97059634 - L2 LINE L2 -2 3270 2916 6841 108 9 27 chrX 65541712 65542671 -97057259 + L1MA2 LINE L1 4484 5458 -846 2022 154 13 0 chrX 65542671 65542976 -97056954 + AluSx SINE Alu 1 309 -3 6841 108 9 27 chrX 65542976 65543312 -97056618 + L1MA2 LINE L1 5458 5798 -506 2103 112 0 3 chrX 65543312 65543622 -97056308 + AluSx SINE Alu 1 309 0 6841 108 9 27 chrX 65543622 65543787 -97056143 + L1MA2 LINE L1 5798 5964 -340 2245 89 11 0 chrX 65543787 65544089 -97055841 - AluSc SINE Alu 0 309 7 6841 108 9 27 chrX 65544089 65544474 -97055456 + L1MA2 LINE L1 5964 6304 0 1914 119 10 53 chrX 65546003 65546305 -97053625 + AluSx SINE Alu 1 289 -23 195 268 74 47 chrX 65547991 65548233 -97051697 + L2 LINE L2 1978 2306 -1008 239 292 94 0 chrX 65548383 65548479 -97051451 + L2 LINE L2 2317 2421 -893 701 190 4 3 chrX 65548704 65548841 -97051089 + L1ME1 LINE L1 6039 6184 0 198 0 0 0 chrX 65548925 65548947 -97050983 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2032 124 7 0 chrX 65548951 65549225 -97050705 - AluSx SINE Alu -36 276 1 1921 140 16 22 chrX 65549763 65550077 -97049853 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 65550328 65550351 -97049579 + AT_rich Low_complexity Low_complexity 1 23 0 1073 157 0 0 chrX 65551144 65551316 -97048614 + FRAM SINE Alu 1 172 -4 2229 114 30 0 chrX 65551965 65552264 -97047666 + AluSx SINE Alu 1 308 -4 22 0 0 0 chrX 65552538 65552560 -97047370 + AT_rich Low_complexity Low_complexity 1 22 0 1064 158 0 0 chrX 65553356 65553527 -97046403 + FRAM SINE Alu 2 172 -4 2213 102 7 3 chrX 65554176 65554471 -97045459 + AluSx SINE Alu 1 296 -16 1448 123 178 8 chrX 65555091 65555344 -97044586 + AluJb SINE Alu 1 296 -16 2213 129 6 3 chrX 65555394 65555705 -97044225 + AluSx SINE Alu 1 312 0 672 179 26 64 chrX 65555732 65555888 -97044042 + FAM SINE Alu 22 171 -14 1351 150 139 25 chrX 65556003 65556277 -97043653 + AluJo SINE Alu 1 305 -7 2289 101 0 0 chrX 65556301 65556614 -97043316 - AluSx SINE Alu 0 313 1 305 257 40 124 chrX 65556633 65556835 -97043095 + L1ME4a LINE L1 5926 6110 -11 322 261 169 15 chrX 65556885 65557015 -97042915 - L2 LINE L2 0 3313 3164 227 307 53 26 chrX 65557016 65557064 -97042866 + MER5A DNA MER1_type 71 116 -73 1957 125 6 51 chrX 65557064 65557376 -97042554 + AluSx SINE Alu 1 298 -14 227 307 53 26 chrX 65557376 65557441 -97042489 + MER5A DNA MER1_type 116 187 -2 * 249 282 0 26 chrX 65557377 65557455 -97042475 - MER5A DNA MER1_type -111 78 3 39 0 0 0 chrX 65557615 65557654 -97042276 + AT_rich Low_complexity Low_complexity 1 39 0 724 289 53 34 chrX 65557772 65558129 -97041801 + L2 LINE L2 1295 1658 -1656 855 222 83 70 chrX 65558155 65558249 -97041681 + L2 LINE L2 2233 2324 -990 2460 81 0 0 chrX 65558249 65558544 -97041386 + AluSq SINE Alu 1 295 -18 855 222 83 70 chrX 65558544 65558751 -97041179 + L2 LINE L2 2324 2538 -776 459 206 61 38 chrX 65558764 65558895 -97041035 - MER104 DNA Tc2 -44 136 3 207 299 0 0 chrX 65558895 65558972 -97040958 + L2 LINE L2 2532 2608 -706 248 281 216 22 chrX 65559122 65559261 -97040669 + L2 LINE L2 3107 3272 0 266 265 44 0 chrX 65559460 65559528 -97040402 + L3 LINE CR1 966 1036 -541 1973 156 0 13 chrX 65559815 65560130 -97039800 - AluJb SINE Alu -1 311 1 595 162 0 0 chrX 65560164 65560269 -97039661 + L1 LINE L1 3478 3582 -2564 2435 69 0 13 chrX 65560270 65560576 -97039354 - AluY SINE Alu -9 302 1 24 0 0 0 chrX 65560576 65560600 -97039330 + AT_rich Low_complexity Low_complexity 1 24 0 1846 143 17 13 chrX 65560607 65560907 -97039023 + AluJb SINE Alu 1 301 -11 1072 90 0 0 chrX 65561011 65561144 -97038786 + AluSq/x SINE Alu 1 133 -179 2243 110 0 31 chrX 65561151 65561469 -97038461 + AluSx SINE Alu 1 308 -4 828 140 0 0 chrX 65561706 65561820 -97038110 - FLAM_C SINE Alu -25 118 5 644 250 140 18 chrX 65561978 65562250 -97037680 - L1MC4a LINE L1 -1835 5973 5669 618 261 107 14 chrX 65562536 65562751 -97037179 - L1MC4a LINE L1 -2164 5644 5410 1552 144 43 0 chrX 65562870 65563126 -97036804 - AluJb SINE Alu -11 301 35 331 296 23 35 chrX 65563398 65563570 -97036360 - L1P LINE L1 -1098 5048 4879 329 102 20 0 chrX 65563762 65563811 -97036119 + AluJ/FRAM SINE Alu 233 282 -20 281 284 136 19 chrX 65563910 65564072 -97035858 + L3 LINE CR1 1267 1447 -130 2549 71 0 0 chrX 65564385 65564694 -97035236 + AluY SINE Alu 1 309 -2 514 285 116 91 chrX 65565605 65566519 -97033411 + L1M2 LINE L1 450 1451 -5398 356 227 23 47 chrX 65567130 65567258 -97032672 + G-rich Low_complexity Low_complexity 2 126 0 388 281 264 6 chrX 65567541 65567660 -97032270 - MIR SINE MIR -27 235 148 2285 73 3 17 chrX 65567660 65567960 -97031970 + AluSg SINE Alu 1 296 -14 388 281 264 6 chrX 65567960 65568018 -97031912 - MIR SINE MIR -114 148 12 2198 119 0 7 chrX 65568759 65569062 -97030868 - AluSx SINE Alu -11 301 1 482 213 67 37 chrX 65571874 65572038 -97027892 + L1ME2 LINE L1 5559 5727 -394 1964 148 3 7 chrX 65572366 65572669 -97027261 - AluJo SINE Alu -6 306 5 855 202 100 63 chrX 65572797 65573090 -97026840 + L1ME2 LINE L1 5741 6096 -68 2248 114 0 0 chrX 65573090 65573387 -97026543 + AluY SINE Alu 1 297 -14 855 202 100 63 chrX 65573387 65573449 -97026481 + L1ME2 LINE L1 6096 6154 -10 1839 167 7 0 chrX 65573460 65573747 -97026183 + AluSx SINE Alu 1 289 -23 23 0 0 0 chrX 65573950 65573973 -97025957 + AT_rich Low_complexity Low_complexity 1 23 0 1599 143 17 47 chrX 65574056 65574356 -97025574 + AluJb SINE Alu 1 291 -21 881 271 23 23 chrX 65574487 65574745 -97025185 - MIR SINE MIR 0 262 5 2317 102 7 0 chrX 65574821 65575124 -97024806 + AluSg SINE Alu 2 306 -4 2529 65 3 0 chrX 65575125 65575432 -97024498 + AluSg SINE Alu 2 309 -1 1130 180 0 67 chrX 65575435 65575674 -97024256 + AluJb SINE Alu 85 307 -5 2389 69 3 0 chrX 65575820 65576110 -97023820 - AluY SINE Alu -20 291 1 2430 104 0 0 chrX 65576258 65576612 -97023318 - AluSx SINE Alu 0 354 1 1139 219 15 0 chrX 65578033 65578238 -97021692 - MER58A DNA MER1_type -16 208 1 1107 246 55 33 chrX 65578270 65578476 -97021454 - MER46C DNA MER2_type -1 337 120 2472 122 19 24 chrX 65578476 65578853 -97021077 + THE1C LTR MaLR 1 375 0 1107 246 55 33 chrX 65578853 65578976 -97020954 - MER46C DNA MER2_type -218 120 1 183 129 0 0 chrX 65578988 65579019 -97020911 + (TCTCC)n Simple_repeat Simple_repeat 3 33 0 1214 201 27 9 chrX 65579286 65579505 -97020425 + MER58A DNA MER1_type 1 223 -1 1735 167 7 20 chrX 65579629 65579922 -97020008 + AluSx SINE Alu 1 289 -23 45 16 0 16 chrX 65579947 65579991 -97019939 + AT_rich Low_complexity Low_complexity 1 45 -17 2278 96 0 7 chrX 65579991 65580283 -97019647 - AluSq SINE Alu -23 290 1 45 16 0 16 chrX 65580283 65580301 -97019629 + AT_rich Low_complexity Low_complexity 45 62 0 186 256 141 13 chrX 65581278 65581356 -97018574 - L2 LINE L2 -213 3059 2972 288 190 101 13 chrX 65581538 65581617 -97018313 + MIR SINE MIR 119 204 -58 455 200 0 21 chrX 65582353 65582448 -97017482 + L1MA10 LINE L1 6242 6334 0 971 164 7 0 chrX 65582500 65582652 -97017278 - AluJo SINE Alu -23 289 137 1655 190 3 7 chrX 65582692 65582976 -97016954 - AluJo SINE Alu -29 283 1 644 132 175 18 chrX 65583680 65583794 -97016136 - AluJo SINE Alu -170 132 1 2438 78 0 0 chrX 65583930 65584224 -97015706 + AluSq SINE Alu 1 294 -19 228 200 0 0 chrX 65584542 65584592 -97015338 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 217 17 17 chrX 65584601 65584661 -97015269 - L1MC4 LINE L1 -1341 6701 6642 2294 93 13 3 chrX 65584856 65585158 -97014772 - AluSc SINE Alu -4 305 1 1855 134 3 31 chrX 65586102 65586392 -97013538 + AluSx SINE Alu 27 308 -4 1995 134 21 0 chrX 65586501 65586792 -97013138 + AluSx SINE Alu 1 297 -15 2050 122 16 13 chrX 65586907 65587218 -97012712 + AluJb SINE Alu 1 312 0 319 248 131 36 chrX 65587334 65587471 -97012459 + L1ME3A LINE L1 6020 6169 -1 31 0 0 0 chrX 65588327 65588358 -97011572 + AT_rich Low_complexity Low_complexity 1 31 0 1983 144 0 22 chrX 65589399 65589718 -97010212 - AluJb SINE Alu 0 312 1 405 0 0 0 chrX 65589978 65590023 -97009907 + (CA)n Simple_repeat Simple_repeat 2 46 0 465 245 145 25 chrX 65591166 65591325 -97008605 + MER5B DNA MER1_type 1 178 0 2225 117 10 0 chrX 65591378 65591686 -97008244 + AluSx SINE Alu 1 311 -1 2348 82 0 7 chrX 65591765 65592068 -97007862 + AluSx SINE Alu 2 302 -10 1779 193 109 109 chrX 65592178 65592473 -97007457 - L1MC5 LINE L1 -46 7915 7621 1934 141 17 3 chrX 65592473 65592770 -97007160 + AluSx SINE Alu 1 301 -11 1779 193 109 109 chrX 65592770 65592919 -97007011 - L1MC5 LINE L1 -340 7621 7473 2006 93 0 67 chrX 65592919 65593232 -97006698 - AluSx SINE Alu -20 292 1 1779 193 109 109 chrX 65593232 65593510 -97006420 - L1MC5 LINE L1 -488 7473 7189 2331 97 0 0 chrX 65593510 65593808 -97006122 - AluSx SINE Alu -14 298 1 1779 193 109 109 chrX 65593808 65593963 -97005967 - L1MC5 LINE L1 -771 7190 7036 2147 131 63 34 chrX 65593967 65594380 -97005550 - L1MA7 LINE L1 0 6291 5867 1615 161 79 8 chrX 65594380 65594610 -97005320 + L1M2 LINE L1 5109 5321 -970 980 168 7 7 chrX 65594610 65594791 -97005139 + FRAM SINE Alu 1 45 0 1615 161 79 8 chrX 65594791 65595019 -97004911 + L1M2 LINE L1 5321 5600 -691 1105 150 47 94 chrX 65595011 65595350 -97004580 - L1MC5 LINE L1 -910 7051 6729 * 1575 141 107 0 chrX 65595391 65595653 -97004277 - AluJo SINE Alu -22 290 1 965 151 52 47 chrX 65595721 65595834 -97004096 - MER47A DNA MER2_type -1958 365 249 1856 176 30 0 chrX 65595834 65596135 -97003795 - AluJo SINE Alu -2 310 1 965 151 52 47 chrX 65596135 65596213 -97003717 - MER47A DNA MER2_type -2074 249 173 3140 121 55 4 chrX 65596230 65596701 -97003229 - L1PA15 LINE L1 0 6165 5671 836 113 8 16 chrX 65596703 65596827 -97003103 - FRAM SINE Alu -13 163 41 931 182 0 12 chrX 65596829 65596994 -97002936 - MER47A DNA MER2_type -186 180 18 240 161 54 54 chrX 65597721 65597777 -97002153 + MER103 DNA DNA 34 89 -77 26 0 0 0 chrX 65599685 65599711 -97000219 + AT_rich Low_complexity Low_complexity 1 26 0 216 294 12 12 chrX 65599872 65599957 -96999973 + GA-rich Low_complexity Low_complexity 1 85 0 1038 220 84 4 chrX 65600764 65601014 -96998916 + MER46C DNA MER2_type 68 337 -1 2094 104 17 3 chrX 65601072 65601360 -96998570 + AluSx SINE Alu 1 292 -20 243 0 0 0 chrX 65601364 65601391 -96998539 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 297 0 0 0 chrX 65601390 65601423 -96998507 + (CA)n Simple_repeat Simple_repeat 2 34 0 2175 114 3 3 chrX 65604186 65604485 -96995445 + AluSq SINE Alu 2 300 -13 840 151 0 0 chrX 65605669 65605795 -96994135 + FLAM_A SINE Alu 1 126 -7 297 317 50 28 chrX 65606105 65606285 -96993645 + MIR SINE MIR 74 257 -5 2449 77 0 3 chrX 65607555 65607855 -96992075 + AluSq SINE Alu 1 299 -14 2509 75 3 0 chrX 65607890 65608195 -96991735 + AluSp SINE Alu 1 306 -7 203 256 0 0 chrX 65611398 65611441 -96988489 + GA-rich Low_complexity Low_complexity 2 44 0 277 239 171 26 chrX 65613643 65613760 -96986170 - L2 LINE L2 0 3272 3139 325 206 0 15 chrX 65614039 65614107 -96985823 - MLT1E1 LTR MaLR 0 654 588 281 231 0 0 chrX 65614218 65614270 -96985660 + LTR30 LTR ERV1 1 52 -670 1445 106 9 115 chrX 65614270 65614599 -96985331 + LTR12 LTR ERV1 55 417 -2021 216 0 0 0 chrX 65614599 65614623 -96985307 + (CCCA)n Simple_repeat Simple_repeat 3 26 0 257 294 11 0 chrX 65614633 65614725 -96985205 + LTR30 LTR ERV1 551 643 -79 732 109 0 4 chrX 65614725 65614832 -96985098 + LTR12 LTR ERV1 170 710 -4 1563 52 14 245 chrX 65615637 65615787 -96984143 + LTR12 LTR ERV1 1 18 -696 2480 82 0 0 chrX 65615787 65616090 -96983840 + AluY SINE Alu 1 303 -8 1563 52 14 245 chrX 65616090 65616306 -96983624 + LTR12 LTR ERV1 18 282 -432 355 224 0 0 chrX 65616308 65616384 -96983546 + LTR30 LTR ERV1 548 623 -99 834 108 25 8 chrX 65616385 65616505 -96983425 + LTR12 LTR ERV1 359 480 -234 2413 103 0 0 chrX 65617742 65618054 -96981876 - AluSq SINE Alu -1 312 1 1119 151 111 96 chrX 65618086 65618357 -96981573 - AluJb SINE Alu -21 291 17 1912 133 0 40 chrX 65619199 65619499 -96980431 + AluJb SINE Alu 7 294 -18 2325 84 0 0 chrX 65619816 65620124 -96979806 + AluSq SINE Alu 1 308 0 2351 103 0 0 chrX 65620196 65620497 -96979433 - AluSg SINE Alu -9 301 1 405 188 12 0 chrX 65620531 65620611 -96979319 - AluJb SINE Alu -113 199 119 2001 140 13 32 chrX 65620826 65621141 -96978789 + AluJb SINE Alu 1 309 -3 2213 120 3 0 chrX 65621949 65622258 -96977672 - AluSx SINE Alu -2 310 1 214 93 23 23 chrX 65622301 65622344 -96977586 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 2287 93 0 13 chrX 65622789 65623091 -96976839 - AluSg SINE Alu -12 298 1 214 93 23 23 chrX 65623134 65623177 -96976753 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 2316 83 0 13 chrX 65623622 65623924 -96976006 - AluSg SINE Alu -12 298 1 1346 70 0 0 chrX 65624005 65624197 -96975733 + AluY SINE Alu 124 315 0 2021 116 0 33 chrX 65624211 65624534 -96975396 + AluSx SINE Alu 1 312 0 1947 44 0 0 chrX 65624654 65624879 -96975051 - AluY SINE Alu -2 309 85 2466 61 0 3 chrX 65624987 65625284 -96974646 - AluY SINE Alu -15 296 1 2433 88 0 3 chrX 65625335 65625641 -96974289 + AluSg SINE Alu 6 310 0 1976 122 10 14 chrX 65625854 65626150 -96973780 + AluSx SINE Alu 1 295 -17 627 115 10 29 chrX 65626228 65626332 -96973598 - AluJb SINE Alu -186 126 25 23 0 0 0 chrX 65626343 65626366 -96973564 + AT_rich Low_complexity Low_complexity 1 23 0 848 238 0 0 chrX 65626366 65626530 -96973400 + FAM SINE Alu 4 167 -8 1378 208 58 95 chrX 65626565 65626836 -96973094 - MLT1E3 LTR MaLR -57 567 312 2331 81 27 6 chrX 65626836 65627169 -96972761 - L1MA3 LINE L1 -1 6304 5965 1378 208 58 95 chrX 65627169 65627277 -96972653 - MLT1E3 LTR MaLR -312 312 202 923 103 27 137 chrX 65627284 65627315 -96972615 - L1MB2 LINE L1 -1 6170 6137 1719 109 0 85 chrX 65627315 65627634 -96972296 + AluSx SINE Alu 21 312 0 923 103 27 137 chrX 65627634 65627663 -96972267 - L1MB2 LINE L1 -34 6137 6106 1023 163 6 6 chrX 65627663 65627829 -96972101 - AluJo SINE Alu 0 302 137 923 103 27 137 chrX 65627829 65627953 -96971977 - L1MB2 LINE L1 -65 6106 6055 1635 182 0 34 chrX 65627953 65628250 -96971680 + AluJo SINE Alu 1 287 -25 923 103 27 137 chrX 65628250 65628402 -96971528 - L1MB2 LINE L1 -116 6055 5888 1267 181 38 0 chrX 65628402 65628612 -96971318 - MLT1E3 LTR MaLR -406 218 1 361 311 142 32 chrX 65629097 65629537 -96970393 + L2 LINE L2 2528 3010 -262 189 0 0 0 chrX 65629840 65629861 -96970069 + (T)n Simple_repeat Simple_repeat 1 21 0 889 158 0 7 chrX 65629966 65630131 -96969799 - FRAM SINE Alu 0 40 1 811 78 0 0 chrX 65630131 65630233 -96969697 - LTR12 LTR ERV1 0 714 613 303 311 8 0 chrX 65630233 65630352 -96969578 - LTR30 LTR ERV1 -79 643 524 1030 86 6 24 chrX 65630352 65630508 -96969422 - LTR12 LTR ERV1 -432 2006 54 252 235 0 0 chrX 65630509 65630560 -96969370 - LTR30 LTR ERV1 -670 52 2 952 158 12 36 chrX 65630560 65630725 -96969205 - AluJo SINE Alu -151 161 1 476 316 86 68 chrX 65630987 65631497 -96968433 + L2 LINE L2 1521 2045 -1269 2271 98 0 10 chrX 65631497 65631792 -96968138 - AluSx SINE Alu -20 292 1 476 316 86 68 chrX 65631792 65631886 -96968044 + L2 LINE L2 2045 2136 -1178 242 0 0 0 chrX 65631887 65631914 -96968016 - LTR40a LTR ERVL 0 519 493 2391 97 0 3 chrX 65631981 65632292 -96967638 - AluY SINE Alu -1 310 1 1973 155 3 0 chrX 65632295 65632591 -96967339 - AluSx SINE Alu -15 297 1 2000 208 83 57 chrX 65632672 65633196 -96966734 + LTR68 LTR ERV1 144 686 -54 2483 79 3 0 chrX 65633196 65633500 -96966430 - AluSp SINE Alu -5 308 4 2000 208 83 57 chrX 65633500 65633553 -96966377 + LTR68 LTR ERV1 686 736 -4 251 342 235 4 chrX 65633556 65633799 -96966131 + L2 LINE L2 2128 2426 -888 488 203 80 108 chrX 65634024 65634148 -96965782 + LTR67 LTR ERVL 352 478 -79 1866 146 0 45 chrX 65634148 65634320 -96965610 - AluJo SINE Alu -17 295 117 195 42 0 0 chrX 65634320 65634344 -96965586 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2065 121 3 24 chrX 65634344 65634634 -96965296 - AluSx SINE Alu -28 284 1 1866 146 0 45 chrX 65634634 65634769 -96965161 - AluJo SINE Alu -193 119 1 488 203 80 108 chrX 65634769 65634856 -96965074 + LTR67 LTR ERVL 478 557 0 551 334 63 20 chrX 65634877 65635179 -96964751 + L2 LINE L2 2447 2761 -553 1927 155 0 3 chrX 65635217 65635513 -96964417 + AluJb SINE Alu 1 295 -17 228 35 0 0 chrX 65635562 65635591 -96964339 + (CA)n Simple_repeat Simple_repeat 1 29 0 2116 116 0 49 chrX 65635690 65636018 -96963912 - AluJo SINE Alu 0 312 1 243 0 0 0 chrX 65636211 65636238 -96963692 + (TA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chrX 65636237 65636258 -96963672 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 223 203 0 17 chrX 65636258 65636317 -96963613 + (TA)n Simple_repeat Simple_repeat 2 59 0 708 129 17 17 chrX 65636319 65636435 -96963495 - AluSg/x SINE Alu -15 297 182 1004 155 0 55 chrX 65636570 65636751 -96963179 + AluJo SINE Alu 1 171 -141 1701 191 7 0 chrX 65636795 65637083 -96962847 + AluJb SINE Alu 1 290 -22 2660 170 67 9 chrX 65637083 65637607 -96962323 - L1MB5 LINE L1 -9 6165 5612 2305 67 0 57 chrX 65637607 65637922 -96962008 - AluY SINE Alu -14 297 1 1309 160 61 103 chrX 65637924 65638086 -96961844 - AluJo SINE Alu -13 299 155 278 0 54 0 chrX 65638086 65638123 -96961807 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1309 160 61 103 chrX 65638123 65638272 -96961658 - AluJo SINE Alu -157 155 1 31 0 0 0 chrX 65638272 65638303 -96961627 + AT_rich Low_complexity Low_complexity 1 31 0 2183 99 3 0 chrX 65638304 65638586 -96961344 - AluSx SINE Alu -29 283 1 3401 137 54 15 chrX 65638586 65639117 -96960813 - L1MC3 LINE L1 -194 7591 7082 210 118 0 0 chrX 65639117 65639151 -96960779 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 3401 137 54 15 chrX 65639151 65639187 -96960743 - L1MC3 LINE L1 -703 7082 7049 2000 148 0 3 chrX 65639187 65639477 -96960453 - AluJb SINE Alu -23 289 1 3401 137 54 15 chrX 65639477 65639498 -96960432 - L1MC3 LINE L1 -736 7049 6979 225 132 0 0 chrX 65639524 65639562 -96960368 + (T)n Simple_repeat Simple_repeat 1 38 0 1048 125 24 36 chrX 65639562 65639730 -96960200 - FRAM SINE Alu 0 166 1 1627 198 7 77 chrX 65640025 65640429 -96959501 - MLT2C1 LTR ERVL 0 397 22 219 217 0 22 chrX 65640513 65640559 -96959371 + GA-rich Low_complexity Low_complexity 1 45 0 597 94 0 0 chrX 65640961 65641046 -96958884 + (TA)n Simple_repeat Simple_repeat 2 86 0 2070 125 14 0 chrX 65641046 65641333 -96958597 - AluSx SINE Alu -21 291 1 2194 133 3 0 chrX 65641358 65641666 -96958264 - AluSx SINE Alu -1 311 3 348 296 19 0 chrX 65641684 65641792 -96958138 + L1MC4a LINE L1 5674 5783 -2025 252 250 0 0 chrX 65641808 65641860 -96958070 + LTR30 LTR ERV1 1 52 -670 1676 105 107 48 chrX 65641860 65642216 -96957714 + LTR12 LTR ERV1 57 2032 -406 404 200 11 0 chrX 65642217 65642307 -96957623 + LTR30 LTR ERV1 553 643 -79 697 103 55 24 chrX 65642307 65642443 -96957487 + LTR12 LTR ERV1 301 714 0 * 6574 109 10 30 chrX 65642443 65643243 -96956687 + HERV9 LTR ERV1 65 845 -7554 2254 93 7 3 chrX 65643243 65643543 -96956387 - AluSq SINE Alu -12 301 1 6574 109 10 30 chrX 65643543 65643697 -96956233 + HERV9 LTR ERV1 845 1000 -7399 * 29040 82 7 7 chrX 65643696 65643774 -96956156 + HERV9 LTR ERV1 1165 1241 -7158 182 37 37 0 chrX 65643774 65643801 -96956129 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 29040 82 7 7 chrX 65643801 65647516 -96952414 + HERV9 LTR ERV1 1241 4959 -3440 369 206 0 0 chrX 65647516 65647618 -96952312 + GA-rich Low_complexity Low_complexity 1 102 0 2377 188 98 65 chrX 65647621 65648467 -96951463 + Harlequin LTR ERV1 867 1740 -5156 * 5815 84 9 8 chrX 65648465 65649238 -96950692 + Harlequin LTR ERV1 7626 8399 0 258 231 0 0 chrX 65649238 65649290 -96950640 + LTR30 LTR ERV1 1 52 -670 1260 59 267 0 chrX 65649290 65649477 -96950453 + LTR12 LTR ERV1 53 289 -425 366 174 0 0 chrX 65649477 65649546 -96950384 + LTR30 LTR ERV1 556 624 -98 749 131 3 0 chrX 65649546 65649665 -96950265 + LTR12 LTR ERV1 359 713 -1 310 192 31 115 chrX 65649665 65649747 -96950183 + L1MC4a LINE L1 5796 5865 -1943 1309 91 56 65 chrX 65649747 65649871 -96950059 + MER30 DNA MER1_type 1 125 -105 2184 99 3 3 chrX 65649871 65650183 -96949747 - AluSx SINE Alu 0 312 1 1309 91 56 65 chrX 65650183 65650289 -96949641 + MER30 DNA MER1_type 125 230 0 310 192 31 115 chrX 65650289 65650336 -96949594 + L1MC4a LINE L1 5865 5914 -1894 1369 163 85 50 chrX 65650339 65650621 -96949309 - AluJo SINE Alu -18 294 3 2210 72 25 4 chrX 65651023 65651300 -96948630 + AluSg SINE Alu 13 295 -15 23 0 0 0 chrX 65651427 65651450 -96948480 + GC_rich Low_complexity Low_complexity 1 23 0 2664 36 0 13 chrX 65652359 65652666 -96947264 + AluY SINE Alu 1 303 -8 374 314 13 6 chrX 65652958 65653117 -96946813 + L2 LINE L2 247 406 -2908 817 61 0 0 chrX 65653156 65653255 -96946675 + HY3 scRNA scRNA 1 99 -2 234 0 0 0 chrX 65653255 65653278 -96946652 + (CAA)n Simple_repeat Simple_repeat 1 49 0 234 0 0 0 chrX 65653278 65653304 -96946626 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2060 103 43 0 chrX 65653317 65653599 -96946331 + AluSx SINE Alu 11 304 -8 759 107 0 8 chrX 65653602 65653723 -96946207 - L1 LINE L1 -1293 4853 4734 1065 41 0 0 chrX 65653769 65653892 -96946038 + AluY SINE Alu 172 294 -17 747 165 67 85 chrX 65653966 65654190 -96945740 - MLT1A2 LTR MaLR 0 374 155 26 0 0 0 chrX 65654216 65654242 -96945688 + AT_rich Low_complexity Low_complexity 1 26 0 203 250 0 0 chrX 65654248 65654292 -96945638 + GA-rich Low_complexity Low_complexity 3 46 0 544 219 109 7 chrX 65654310 65654447 -96945483 - MLT1A2 LTR MaLR -214 151 1 2314 101 3 0 chrX 65654631 65654929 -96945001 - AluSp SINE Alu -14 299 1 4158 223 65 56 chrX 65655074 65655229 -96944701 + L1MEc LINE L1 36 188 -6208 2465 94 0 0 chrX 65655229 65655538 -96944392 - AluSx SINE Alu -2 310 2 4158 223 65 56 chrX 65655538 65655811 -96944119 + L1MEc LINE L1 188 457 -5939 2154 90 0 4 chrX 65655811 65656088 -96943842 + AluSg SINE Alu 31 306 -4 4158 223 65 56 chrX 65656088 65656701 -96943229 + L1MEc LINE L1 457 1095 -5301 2371 95 3 0 chrX 65656701 65657006 -96942924 + AluSq SINE Alu 1 306 -7 4158 223 65 56 chrX 65657006 65657309 -96942621 + L1MEc LINE L1 1095 1394 -5002 810 235 187 0 chrX 65657320 65657673 -96942257 + L1MEc LINE L1 3155 3573 -2642 1540 140 55 31 chrX 65657674 65657966 -96941964 + AluJo SINE Alu 1 299 -13 1252 159 59 38 chrX 65657974 65658213 -96941717 + AluJb SINE Alu 1 244 -68 841 146 0 0 chrX 65658212 65658375 -96941555 + AluSg/x SINE Alu 163 310 0 * 2415 164 10 29 chrX 65658375 65659011 -96940919 + L1M3 LINE L1 5049 5672 -508 590 189 25 8 chrX 65659013 65659135 -96940795 + L1MD2 LINE L1 6223 6346 -13 1330 282 80 31 chrX 65659135 65659646 -96940284 - MLT1E LTR MaLR -51 542 7 2342 98 3 0 chrX 65659692 65659987 -96939943 + AluSx SINE Alu 1 296 -16 835 189 0 0 chrX 65660154 65660297 -96939633 + FLAM_C SINE Alu 1 143 0 743 147 145 11 chrX 65660303 65660469 -96939461 + L1MD2 LINE L1 6164 7808 0 216 0 0 0 chrX 65660519 65660543 -96939387 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 369 0 0 0 chrX 65660542 65660583 -96939347 + (GA)n Simple_repeat Simple_repeat 2 42 0 289 100 0 0 chrX 65660659 65660699 -96939231 + Tigger1 DNA MER2_type 429 468 -1950 1013 143 77 0 chrX 65660710 65660878 -96939052 - AluJb SINE Alu -3 309 129 4712 102 46 17 chrX 65660899 65661036 -96938894 + Tigger1 DNA MER2_type 1702 1834 -584 1688 144 33 59 chrX 65661036 65661342 -96938588 + AluJo SINE Alu 1 298 -14 4712 102 46 17 chrX 65661342 65661901 -96938029 + Tigger1 DNA MER2_type 1834 2418 0 646 268 83 94 chrX 65662168 65662423 -96937507 + MLT1L LTR MaLR 239 595 -20 195 360 54 14 chrX 65662423 65662467 -96937463 + L2 LINE L2 2706 2747 -567 2450 82 0 0 chrX 65662467 65662773 -96937157 + AluY SINE Alu 1 306 -5 195 360 54 14 chrX 65662773 65662875 -96937055 + L2 LINE L2 2747 2858 -456 2398 67 0 0 chrX 65663044 65663327 -96936603 - AluSq SINE Alu -30 283 1 422 214 20 0 chrX 65663341 65663439 -96936491 + L2 LINE L2 2545 2644 -670 * 1116 205 141 38 chrX 65663432 65663773 -96936157 + L2 LINE L2 2934 3309 -4 350 211 14 0 chrX 65663833 65663904 -96936026 + L2 LINE L2 3200 3271 -1 941 133 87 13 chrX 65663927 65664077 -96935853 - AluJo/FRAM SINE Alu -17 295 135 2027 148 7 0 chrX 65664078 65664381 -96935549 - AluJo SINE Alu -7 305 1 1027 259 37 68 chrX 65664588 65664723 -96935207 - L1ME3A LINE L1 -79 6091 5953 2151 148 0 0 chrX 65664723 65665034 -96934896 - AluSx SINE Alu -1 311 1 1027 259 37 68 chrX 65665034 65665381 -96934549 - L1ME3A LINE L1 -217 5953 5624 867 60 0 0 chrX 65665389 65665489 -96934441 + AluS SINE Alu 1 100 -213 249 224 41 10 chrX 65665489 65665587 -96934343 - L1ME3A LINE L1 -774 5388 5288 627 176 8 69 chrX 65665627 65665758 -96934172 - FLAM_C SINE Alu -19 124 2 871 157 7 21 chrX 65665773 65665941 -96933989 - FRAM SINE Alu 0 173 8 1945 98 0 8 chrX 65665959 65666213 -96933717 - AluSq SINE Alu -20 293 42 1148 244 62 107 chrX 65666234 65666314 -96933616 - L1ME3A LINE L1 -893 5253 5171 2115 138 0 0 chrX 65666314 65666612 -96933318 - AluSx SINE Alu -14 298 1 1148 244 62 107 chrX 65666612 65666731 -96933199 - L1ME3A LINE L1 -975 5171 5048 1756 164 3 35 chrX 65666731 65667041 -96932889 + AluJo SINE Alu 5 304 -8 1148 244 62 107 chrX 65667041 65667085 -96932845 - L1ME3A LINE L1 -1098 5048 5004 2212 125 0 0 chrX 65667085 65667380 -96932550 + AluSx SINE Alu 1 295 -17 1148 244 62 107 chrX 65667380 65667681 -96932249 - L1ME3A LINE L1 -1142 5004 4691 1892 149 0 24 chrX 65667681 65667970 -96931960 - AluJo SINE Alu -30 282 1 1148 244 62 107 chrX 65667970 65668161 -96931769 - L1ME3A LINE L1 -1455 4691 4559 2837 111 34 5 chrX 65668161 65668575 -96931355 - MSTB LTR MaLR 0 426 1 1148 244 62 107 chrX 65668575 65668711 -96931219 - L1ME3A LINE L1 -1587 4559 4418 2501 81 0 3 chrX 65668711 65669019 -96930911 - AluSg SINE Alu -2 308 2 378 258 129 31 chrX 65669079 65669366 -96930564 + L2 LINE L2 2176 2490 -824 * 1092 307 54 9 chrX 65669338 65669784 -96930146 + L2 LINE L2 2848 3313 0 207 326 79 79 chrX 65669825 65670129 -96929801 + L2 LINE L2 2503 2806 -508 2030 130 17 0 chrX 65670168 65670460 -96929470 - AluSq SINE Alu -16 297 1 213 39 0 0 chrX 65670600 65670626 -96929304 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1022 186 27 95 chrX 65670638 65670934 -96928996 - AluJo SINE Alu -36 276 1 218 303 74 16 chrX 65670938 65671060 -96928870 + L2 LINE L2 2926 3054 -218 248 193 128 83 chrX 65671442 65671551 -96928379 + HAL1 LINE L1 2367 2480 -27 2142 95 11 3 chrX 65671565 65671873 -96928057 - AluSx SINE Alu 0 310 1 327 349 74 0 chrX 65671887 65672076 -96927854 + L1ME LINE L1 5601 5803 -318 848 130 52 58 chrX 65672076 65672230 -96927700 + AluJ SINE Alu 44 196 -116 1285 90 0 0 chrX 65672230 65672396 -96927534 + MER51A LTR ERV1 15 180 -454 * 2538 91 3 8 chrX 65672392 65672743 -96927187 + MER51A LTR ERV1 286 634 0 777 143 0 0 chrX 65672743 65672862 -96927068 + AluJ SINE Alu 185 303 -9 243 0 0 0 chrX 65672950 65672977 -96926953 + (TG)n Simple_repeat Simple_repeat 2 28 0 2292 87 0 17 chrX 65672990 65673288 -96926642 - AluSc SINE Alu -16 293 1 1342 182 91 4 chrX 65673299 65673445 -96926485 - AluJo SINE Alu -25 287 155 313 58 39 0 chrX 65673445 65673497 -96926433 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1342 182 91 4 chrX 65673497 65673614 -96926316 - AluJo SINE Alu -157 155 1 1328 117 0 5 chrX 65673651 65673839 -96926091 + AluSx SINE Alu 5 191 -121 364 68 0 0 chrX 65673839 65673883 -96926047 + AluY SINE Alu 57 100 -201 188 182 23 0 chrX 65673885 65673929 -96926001 + (TA)n Simple_repeat Simple_repeat 1 45 0 27 49 0 0 chrX 65674071 65674112 -96925818 + AT_rich Low_complexity Low_complexity 1 41 0 303 281 51 36 chrX 65674119 65674315 -96925615 - L1ME4a LINE L1 -46 6075 5877 2235 100 3 0 chrX 65674323 65674636 -96925294 + AluSp SINE Alu 1 313 0 1284 165 9 17 chrX 65674682 65674912 -96925018 - AluJo SINE Alu -84 228 1 1754 121 55 12 chrX 65675046 65675303 -96924627 - AluJo SINE Alu -44 268 1 249 33 0 0 chrX 65675307 65675337 -96924593 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1606 168 19 0 chrX 65675339 65675601 -96924329 - AluJb SINE Alu -33 279 13 2529 57 3 0 chrX 65675621 65675918 -96924012 - AluSg SINE Alu -12 298 1 829 240 29 29 chrX 65675920 65676053 -96923877 - L1ME4a LINE L1 -383 5738 5603 2071 128 20 3 chrX 65676053 65676350 -96923580 - AluJb SINE Alu -10 302 1 829 240 29 29 chrX 65676350 65676458 -96923472 - L1ME4a LINE L1 -517 5604 5497 454 258 89 40 chrX 65676482 65676659 -96923271 + MIR SINE MIR 14 206 -56 389 145 40 0 chrX 65676659 65676735 -96923195 + MER116 DNA Mariner 2 80 0 454 258 89 40 chrX 65676735 65676782 -96923148 + MIR SINE MIR 206 249 -13 518 207 0 0 chrX 65676917 65677004 -96922926 + 7SLRNA srpRNA srpRNA 1 87 -233 1874 44 9 9 chrX 65677005 65677234 -96922696 + SVA Other Other 1158 1386 0 2035 124 35 3 chrX 65677530 65677646 -96922284 + AluSx SINE Alu 1 112 -200 2125 82 0 0 chrX 65677646 65677903 -96922027 + AluSq SINE Alu 1 257 -56 2035 124 35 3 chrX 65677903 65678076 -96921854 + AluSx SINE Alu 112 299 -13 25 31 0 0 chrX 65678321 65678353 -96921577 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chrX 65678818 65678840 -96921090 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 394 280 82 106 chrX 65678844 65679212 -96920718 + L2 LINE L2 2904 3262 -10 209 313 125 0 chrX 65679222 65679318 -96920612 - L2 LINE L2 -8 3264 3157 21 0 0 0 chrX 65679455 65679476 -96920454 + AT_rich Low_complexity Low_complexity 1 21 0 2333 95 0 3 chrX 65679605 65679901 -96920029 - AluSx SINE Alu -17 295 1 205 152 0 0 chrX 65680385 65680418 -96919512 + CT-rich Low_complexity Low_complexity 2 34 0 305 352 72 0 chrX 65680801 65680994 -96918936 + L2 LINE L2 2493 2699 -615 1263 241 82 74 chrX 65681039 65681749 -96918181 - L1ME4a LINE L1 -11 6110 5392 2304 72 14 0 chrX 65681749 65682028 -96917902 - AluSc SINE Alu -26 283 1 1263 241 82 74 chrX 65682028 65682112 -96917818 - L1ME4a LINE L1 -729 5392 5310 214 310 82 82 chrX 65682269 65682585 -96917345 + L2 LINE L2 2871 3186 -86 769 271 48 99 chrX 65683005 65683441 -96916489 + L2 LINE L2 2854 3267 -5 2009 139 13 20 chrX 65684065 65684367 -96915563 - AluJo SINE Alu -12 300 1 48 0 0 0 chrX 65685570 65685618 -96914312 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chrX 65685877 65685897 -96914033 + (CACCAT)n Simple_repeat Simple_repeat 5 24 0 622 269 106 0 chrX 65686538 65686746 -96913184 + MIR SINE MIR 6 235 -27 251 257 144 59 chrX 65686894 65687081 -96912849 + L1ME4a LINE L1 5917 6119 -2 2462 62 26 0 chrX 65687356 65687661 -96912269 + AluSp SINE Alu 1 313 0 318 240 224 8 chrX 65688613 65688738 -96911192 - MIR SINE MIR -65 197 46 363 225 230 27 chrX 65689617 65689804 -96910126 - L2 LINE L2 -50 3263 3039 1043 180 28 47 chrX 65689850 65690061 -96909869 - AluJb SINE Alu -19 293 87 495 251 63 26 chrX 65690302 65690493 -96909437 - L1MC5 LINE L1 -50 7911 7714 733 124 0 0 chrX 65690493 65690598 -96909332 - AluSq/x SINE Alu -203 109 5 1406 131 46 67 chrX 65690618 65690787 -96909143 + L1MC1 LINE L1 6039 6201 -132 1263 138 185 50 chrX 65690787 65691047 -96908883 - AluJo SINE Alu -7 295 1 1406 131 46 67 chrX 65691047 65691160 -96908770 + L1MC1 LINE L1 6201 6315 -18 10681 28 2 156 chrX 65691207 65692844 -96907086 + SVA Other Other 1 1386 0 526 210 102 34 chrX 65692848 65693053 -96906877 - L1MC5 LINE L1 -246 7715 7497 362 233 0 35 chrX 65693143 65693229 -96906701 + L1ME3A LINE L1 6083 6165 -5 1119 210 43 31 chrX 65693229 65693486 -96906444 + MER102b DNA MER1_type 82 341 0 244 356 118 7 chrX 65693527 65693662 -96906268 - L2 LINE L2 0 3272 3123 2255 118 0 0 chrX 65693821 65694117 -96905813 + AluSx SINE Alu 1 296 -16 2087 147 3 0 chrX 65694252 65694559 -96905371 + AluJb SINE Alu 1 308 -4 2474 81 3 28 chrX 65694900 65695034 -96904896 + AluSp SINE Alu 1 137 -176 2359 64 40 0 chrX 65695034 65695332 -96904598 + AluSp SINE Alu 1 310 -3 2474 81 3 28 chrX 65695332 65695518 -96904412 + AluSp SINE Alu 137 313 0 2113 113 24 3 chrX 65696611 65696903 -96903027 - AluSx SINE Alu -14 298 1 21 36 0 0 chrX 65697884 65697912 -96902018 + AT_rich Low_complexity Low_complexity 1 28 0 251 348 11 0 chrX 65697958 65698050 -96901880 + L1MC/D LINE L1 5495 5587 -2221 2108 125 14 0 chrX 65698113 65698408 -96901522 + AluSx SINE Alu 1 299 -13 490 216 109 28 chrX 65698438 65698753 -96901177 + L1MC4a LINE L1 4478 4749 -1397 * 1046 211 54 29 chrX 65698746 65699005 -96900925 + L1M4 LINE L1 4822 5090 -1056 1793 127 8 19 chrX 65699005 65699272 -96900658 - AluSx SINE Alu -10 302 39 1046 211 54 29 chrX 65699272 65699291 -96900639 + L1M4 LINE L1 5090 5107 -1039 2020 75 75 11 chrX 65699296 65699576 -96900354 + AluY SINE Alu 1 298 -13 1240 196 14 5 chrX 65699668 65699887 -96900043 - AluJb SINE Alu -91 221 1 506 222 6 31 chrX 65699889 65700016 -96899914 + L1M4 LINE L1 5176 5305 -841 2201 120 0 0 chrX 65700016 65700308 -96899622 + AluSx SINE Alu 1 292 -20 1768 141 32 11 chrX 65700312 65700617 -96899313 + AluSx SINE Alu 1 311 0 506 222 6 31 chrX 65700617 65700645 -96899285 + L1M4 LINE L1 5308 5333 -813 9899 50 7 1 chrX 65700645 65702630 -96897300 + L1PA6 LINE L1 4137 6128 -26 1552 127 27 4 chrX 65702634 65702893 -96897037 + L1MA5A LINE L1 6030 6294 -3 22 35 0 0 chrX 65702931 65702960 -96896970 + AT_rich Low_complexity Low_complexity 1 29 0 248 114 63 25 chrX 65703065 65703144 -96896786 + L1MD2 LINE L1 5290 5371 -799 1457 130 0 0 chrX 65703159 65703359 -96896571 + AluSx SINE Alu 37 236 -76 230 151 38 19 chrX 65703359 65703412 -96896518 + GA-rich Low_complexity Low_complexity 2 55 0 503 146 92 199 chrX 65703416 65703677 -96896253 + L1MD2 LINE L1 5353 5585 -657 400 146 0 164 chrX 65703679 65703789 -96896141 + U13 snRNA snRNA 1 92 -12 2579 219 87 25 chrX 65703824 65704551 -96895379 + L1MD2 LINE L1 5573 6344 -15 304 160 20 0 chrX 65704634 65704684 -96895246 - MER66B LTR ERV1 -141 345 295 245 313 102 83 chrX 65705293 65705346 -96894584 - L2 LINE L2 -1226 2088 2037 1652 93 31 43 chrX 65705346 65705603 -96894327 - AluSx SINE Alu -18 294 41 245 313 102 83 chrX 65705603 65705858 -96894072 - L2 LINE L2 -1277 2037 1769 2009 116 34 58 chrX 65705858 65706187 -96893743 + L1MB4 LINE L1 5812 6132 -48 2368 96 0 3 chrX 65706187 65706489 -96893441 + AluSx SINE Alu 1 301 -11 2009 116 34 58 chrX 65706489 65706537 -96893393 + L1MB4 LINE L1 6132 6180 0 245 313 102 83 chrX 65706537 65706611 -96893319 - L2 LINE L2 -1545 1769 1698 550 133 0 0 chrX 65706648 65706731 -96893199 - AluS SINE Alu -3 307 225 1158 101 0 0 chrX 65706748 65706897 -96893033 - AluSq/x SINE Alu -164 149 1 21 57 0 0 chrX 65707175 65707210 -96892720 + AT_rich Low_complexity Low_complexity 1 35 0 282 295 124 47 chrX 65707239 65707677 -96892253 + L1M4 LINE L1 4388 4902 -1244 2130 131 0 16 chrX 65707677 65707814 -96892116 + AluJb SINE Alu 1 139 -173 2482 61 17 0 chrX 65707814 65708109 -96891821 + AluY SINE Alu 1 300 -11 2130 131 0 16 chrX 65708109 65708285 -96891645 + AluJb SINE Alu 139 309 -3 282 295 124 47 chrX 65708285 65708545 -96891385 + L1M4 LINE L1 4902 5140 -1006 492 255 61 31 chrX 65708594 65708790 -96891140 + L1MEc LINE L1 23 224 -6172 474 280 93 30 chrX 65708809 65709045 -96890885 + L1MEc LINE L1 279 529 -5867 243 244 0 0 chrX 65709318 65709359 -96890571 - 5S rRNA rRNA -79 42 2 824 206 39 0 chrX 65710082 65710237 -96889693 - AluJo SINE Alu -151 161 1 1005 238 82 29 chrX 65710595 65710910 -96889020 + MER102b DNA MER1_type 1 332 -9 275 335 107 24 chrX 65710952 65711242 -96888688 + L2 LINE L2 611 924 -2390 2311 101 0 3 chrX 65712391 65712689 -96887241 - AluSc SINE Alu -12 297 1 1675 165 8 0 chrX 65712961 65713227 -96886703 + AluSx SINE Alu 1 268 -44 683 86 0 0 chrX 65713227 65713320 -96886610 + AluSg/x SINE Alu 216 308 -1 401 235 144 32 chrX 65713321 65713508 -96886422 + L2 LINE L2 2262 2469 -845 417 229 137 30 chrX 65713643 65713774 -96886156 + MER102a DNA MER1_type 183 327 -3 501 264 66 83 chrX 65713860 65713918 -96886012 - L1MC/D LINE L1 -1952 5833 5776 2536 52 0 13 chrX 65713918 65714225 -96885705 - AluY SINE Alu -8 303 1 501 264 66 83 chrX 65714225 65714443 -96885487 - L1MC/D LINE L1 -2009 5776 5524 222 394 37 21 chrX 65714445 65714686 -96885244 + L2 LINE L2 2451 2695 -619 217 263 18 0 chrX 65714976 65715033 -96884897 + L2 LINE L2 3001 3058 -214 2598 48 0 0 chrX 65715039 65715330 -96884600 - AluY SINE Alu -20 291 1 628 223 130 46 chrX 65715348 65715716 -96884214 - L1ME4a LINE L1 -47 6074 5676 613 256 68 16 chrX 65715742 65715933 -96883997 - MIR SINE MIR -49 213 13 465 290 55 56 chrX 65715948 65716054 -96883876 - L1ME4a LINE L1 -535 5586 5481 1965 86 4 4 chrX 65716054 65716311 -96883619 + AluSg SINE Alu 45 301 -9 465 290 55 56 chrX 65716311 65716363 -96883567 - L1ME4a LINE L1 -640 5481 5430 2136 139 0 0 chrX 65716363 65716666 -96883264 - AluSx SINE Alu -9 303 1 465 290 55 56 chrX 65716666 65716829 -96883101 - L1ME4a LINE L1 -691 5430 5262 2318 90 3 0 chrX 65717590 65717889 -96882041 - AluSp SINE Alu -13 300 1 313 280 23 45 chrX 65717889 65718021 -96881909 + L2 LINE L2 2895 3023 -249 809 126 0 44 chrX 65718039 65718174 -96881756 + FLAM_C SINE Alu 5 133 0 891 145 0 0 chrX 65718214 65718345 -96881585 - FLAM_C SINE Alu -2 131 1 1651 158 7 42 chrX 65718661 65718971 -96880959 - AluJo SINE Alu -11 301 3 281 247 86 11 chrX 65718991 65719084 -96880846 + L2 LINE L2 3136 3235 -37 2379 98 0 7 chrX 65719398 65719705 -96880225 + AluSq SINE Alu 1 305 -8 817 122 107 15 chrX 65719776 65719907 -96880023 + FLAM_C SINE Alu 1 143 0 431 132 15 0 chrX 65719937 65720005 -96879925 + AluJ/FRAM SINE Alu 223 291 -21 2461 77 0 13 chrX 65721282 65721593 -96878337 + AluY SINE Alu 2 308 -3 1925 119 26 33 chrX 65721698 65722000 -96877930 + AluSx SINE Alu 1 300 -12 845 199 66 7 chrX 65722280 65722485 -96877445 - L1P5 LINE L1 -627 5527 5306 316 290 99 15 chrX 65722692 65722823 -96877107 + MIR3 SINE MIR 49 190 -18 283 315 0 0 chrX 65724241 65724333 -96875597 + A-rich Low_complexity Low_complexity 1 92 0 202 239 0 0 chrX 65724920 65724966 -96874964 + T-rich Low_complexity Low_complexity 1 46 0 2516 75 7 0 chrX 65725256 65725561 -96874369 + AluSp SINE Alu 1 307 -6 226 271 188 0 chrX 65725822 65725907 -96874023 - L2 LINE L2 -1 3271 3171 1915 160 7 10 chrX 65725926 65726232 -96873698 + AluJo SINE Alu 1 305 -7 435 158 92 0 chrX 65726521 65726597 -96873333 - Tigger5 DNA MER2_type 0 2323 2241 1867 153 3 26 chrX 65726659 65726967 -96872963 + AluJo SINE Alu 1 301 -11 2072 151 31 3 chrX 65726967 65727286 -96872644 - MSTC LTR MaLR -72 356 29 756 113 0 113 chrX 65727286 65727436 -96872494 - FLAM_C SINE Alu 0 133 1 2040 140 7 7 chrX 65727912 65728219 -96871711 - AluJo SINE Alu -5 307 1 201 320 27 0 chrX 65728794 65728869 -96871061 - MIR SINE MIR -8 254 178 2263 120 10 0 chrX 65728886 65729194 -96870736 + AluSx SINE Alu 1 311 -1 222 250 145 0 chrX 65729199 65729275 -96870655 - MIR SINE MIR -161 101 15 2253 125 0 3 chrX 65729275 65729586 -96870344 - AluSx SINE Alu -2 310 1 188 285 115 15 chrX 65730629 65730759 -96869171 - L2 LINE L2 -1001 2313 2171 1827 165 8 97 chrX 65730805 65731130 -96868800 + L1MD3 LINE L1 5317 5669 -485 1077 181 53 18 chrX 65731130 65731357 -96868573 - MER46A DNA MER2_type 0 236 2 1827 165 8 97 chrX 65731357 65731448 -96868482 + L1MD3 LINE L1 5669 5767 -387 1908 127 7 3 chrX 65731448 65731731 -96868199 + AluY SINE Alu 12 295 -16 1827 165 8 97 chrX 65731731 65731894 -96868036 + L1MD3 LINE L1 5767 5607 -547 2001 154 0 13 chrX 65731894 65732200 -96867730 + AluJo SINE Alu 1 302 -10 1827 165 8 97 chrX 65732200 65732248 -96867682 + L1MD3 LINE L1 5606 5657 -497 2166 85 7 11 chrX 65732264 65732567 -96867363 + AluSp SINE Alu 1 302 0 333 155 0 0 chrX 65732576 65732634 -96867296 + L1MB8 LINE L1 6119 6176 -2 229 239 0 75 chrX 65732750 65732817 -96867113 + MIR SINE MIR 1 62 -200 834 141 0 0 chrX 65732820 65732948 -96866982 - AluSg/x SINE Alu -6 306 179 1833 145 7 21 chrX 65732949 65733238 -96866692 + AluSx SINE Alu 9 293 -19 2164 125 0 0 chrX 65733240 65733535 -96866395 + AluSx SINE Alu 1 295 -17 2519 78 0 0 chrX 65733566 65733875 -96866055 + AluY SINE Alu 1 309 -2 719 60 90 0 chrX 65733905 65734005 -96865925 - L1PA10 LINE L1 -2 6166 6058 21 0 0 0 chrX 65734009 65734030 -96865900 + AT_rich Low_complexity Low_complexity 1 21 0 222 309 25 0 chrX 65734030 65734111 -96865819 + MIR SINE MIR 97 179 -83 2326 98 0 0 chrX 65734132 65734429 -96865501 + AluSg SINE Alu 1 297 -13 448 222 48 41 chrX 65734635 65734794 -96865136 - MIR SINE MIR -28 180 19 229 150 0 16 chrX 65734894 65735128 -96864802 + AluJo SINE Alu 1 302 -1 2302 66 42 3 chrX 65735293 65735579 -96864351 - AluY SINE Alu -14 297 1 2066 94 31 11 chrX 65735716 65736002 -96863928 + AluSg SINE Alu 1 292 -18 2240 130 0 0 chrX 65736807 65737108 -96862822 + AluSx SINE Alu 3 303 -9 2304 105 10 0 chrX 65737111 65737406 -96862524 + AluSx SINE Alu 2 299 -13 240 307 102 0 chrX 65737883 65737971 -96861959 + MIR3 SINE MIR 93 189 -19 2291 108 10 0 chrX 65737971 65738276 -96861654 - AluSq SINE Alu -5 308 1 897 119 0 0 chrX 65738480 65738598 -96861332 - FLAM_C SINE Alu -15 118 1 1946 126 0 0 chrX 65738672 65738933 -96860997 + AluSx SINE Alu 1 261 -51 346 287 72 72 chrX 65738935 65739064 -96860866 + L1MC4a LINE L1 6165 6293 -1515 2505 72 0 7 chrX 65739064 65739370 -96860560 + AluSx SINE Alu 1 304 -8 346 287 72 72 chrX 65739370 65739683 -96860247 + L1MC4a LINE L1 6292 6607 -1201 1947 119 54 0 chrX 65739685 65739963 -96859967 + AluSx SINE Alu 1 293 -19 1608 251 196 56 chrX 65739963 65740050 -96859880 + L1MC4 LINE L1 6810 6884 -1158 2251 104 0 0 chrX 65740050 65740347 -96859583 + AluSg SINE Alu 1 297 -13 1608 251 196 56 chrX 65740347 65740993 -96858937 + L1MC4 LINE L1 6884 7439 -603 1914 183 0 0 chrX 65740993 65741305 -96858625 + AluJb SINE Alu 1 312 0 1608 251 196 56 chrX 65741305 65741652 -96858278 + L1MC4 LINE L1 7439 8042 0 867 118 71 0 chrX 65741783 65741910 -96858020 + AluSq/x SINE Alu 1 136 -176 1950 102 42 18 chrX 65741910 65742193 -96857737 + AluSx SINE Alu 1 290 -22 183 256 26 0 chrX 65742255 65742294 -96857636 - L2 LINE L2 -23 3249 3210 * 239 256 147 23 chrX 65742264 65742393 -96857537 - MIR SINE MIR -27 235 91 512 153 3 0 chrX 65742872 65742957 -96856973 + MER8 DNA MER2_type 2 76 -163 404 125 0 0 chrX 65742996 65743052 -96856878 - Tigger2 DNA MER2_type -2662 56 1 187 82 99 0 chrX 65743425 65743461 -96856469 + MIR SINE MIR 114 151 -111 269 283 208 6 chrX 65743569 65743742 -96856188 - MIR SINE MIR -50 212 5 2005 158 0 3 chrX 65743931 65744241 -96855689 + AluSx SINE Alu 1 309 -3 2391 78 0 0 chrX 65744290 65744583 -96855347 + AluSq SINE Alu 1 293 -20 1138 158 0 0 chrX 65744583 65744760 -96855170 + AluSg/x SINE Alu 132 308 -2 2289 116 0 3 chrX 65744765 65745076 -96854854 + AluSg SINE Alu 1 310 0 2173 111 0 0 chrX 65745081 65745370 -96854560 + AluJb SINE Alu 1 289 -23 2538 66 0 0 chrX 65745961 65746263 -96853667 - AluSg SINE Alu -8 302 1 1937 157 3 3 chrX 65746538 65746832 -96853098 + AluSx SINE Alu 1 294 -18 1761 139 30 13 chrX 65747268 65747569 -96852361 - AluJb SINE Alu -6 306 1 1706 155 24 14 chrX 65747729 65748025 -96851905 + AluJo SINE Alu 1 299 -13 527 276 104 12 chrX 65748101 65748158 -96851772 - MER5A DNA MER1_type -6 183 133 2007 115 31 0 chrX 65748158 65748445 -96851485 - AluSx SINE Alu -16 296 1 527 276 104 12 chrX 65748445 65748550 -96851380 - MER5A DNA MER1_type -56 133 6 192 350 73 46 chrX 65748677 65748809 -96851121 + L2 LINE L2 2236 2363 -951 1831 132 15 0 chrX 65748809 65749082 -96850848 - AluJb SINE Alu -23 289 13 192 350 73 46 chrX 65749082 65749209 -96850721 + L2 LINE L2 2363 2502 -812 1178 104 77 6 chrX 65749324 65749506 -96850424 + AluJb SINE Alu 1 195 -117 1157 148 0 0 chrX 65749510 65749692 -96850238 + AluJb SINE Alu 122 303 -9 390 100 0 0 chrX 65751036 65751096 -96848834 + (CA)n Simple_repeat Simple_repeat 1 60 0 2078 114 7 0 chrX 65752394 65752691 -96847239 + AluSx SINE Alu 1 299 -13 26 0 0 0 chrX 65752761 65752787 -96847143 + AT_rich Low_complexity Low_complexity 1 26 0 832 167 0 0 chrX 65752787 65752919 -96847011 - FLAM_C SINE Alu -1 132 1 1596 182 10 33 chrX 65753189 65753301 -96846629 + AluJo SINE Alu 1 114 -198 2206 95 3 0 chrX 65753301 65753607 -96846323 - AluSq SINE Alu -6 307 1 1596 182 10 33 chrX 65753607 65753796 -96846134 + AluJo SINE Alu 114 295 -17 188 335 159 40 chrX 65753867 65754094 -96845836 - L2 LINE L2 -213 3059 2806 1878 121 6 43 chrX 65754146 65754468 -96845462 + AluSx SINE Alu 2 311 -1 242 180 98 0 chrX 65754535 65754596 -96845334 + L1MA10 LINE L1 6261 6327 -7 1967 119 0 14 chrX 65756214 65756371 -96843559 - AluSx SINE Alu -23 289 136 2403 64 3 0 chrX 65756371 65756669 -96843261 - AluSp SINE Alu -14 299 1 1967 119 0 14 chrX 65756669 65756804 -96843126 - AluSx SINE Alu -176 136 1 334 289 47 72 chrX 65757249 65757430 -96842500 + MIR SINE MIR 5 189 -67 1839 154 0 0 chrX 65757557 65757850 -96842080 + AluJb SINE Alu 2 294 -18 2369 63 3 3 chrX 65758143 65758442 -96841488 - AluSp SINE Alu -14 299 1 22 56 0 0 chrX 65758950 65758986 -96840944 + AT_rich Low_complexity Low_complexity 1 36 0 1090 116 159 19 chrX 65759455 65759614 -96840316 - MER46A DNA MER2_type -2495 236 40 2077 113 7 0 chrX 65759614 65759906 -96840024 + AluSc SINE Alu 1 294 -15 1090 116 159 19 chrX 65759906 65759953 -96839977 - MER46A DNA MER2_type -2691 40 1 243 261 105 51 chrX 65760479 65760517 -96839413 - L1MC5 LINE L1 -11 8031 7996 1972 142 32 18 chrX 65760517 65760856 -96839074 - MER2 DNA MER2_type 0 344 1 243 261 105 51 chrX 65760856 65761129 -96838801 - L1MC5 LINE L1 -46 7996 7625 2069 128 0 0 chrX 65762762 65763059 -96836871 + AluSp SINE Alu 7 303 -10 311 218 64 0 chrX 65763071 65763149 -96836781 + L1ME4a LINE L1 5690 5772 -349 1979 117 14 3 chrX 65763332 65763622 -96836308 + AluSx SINE Alu 3 295 -17 651 176 50 8 chrX 65763759 65763878 -96836052 + FLAM_A SINE Alu 1 124 -9 23 0 0 0 chrX 65763878 65763901 -96836029 + AT_rich Low_complexity Low_complexity 1 23 0 813 156 7 22 chrX 65763968 65764103 -96835827 + AluJo SINE Alu 2 134 -178 233 230 342 11 chrX 65764124 65764311 -96835619 + L1ME4a LINE L1 5873 6121 0 2091 105 3 10 chrX 65764419 65764723 -96835207 + AluSp SINE Alu 1 302 -11 21 0 0 0 chrX 65764815 65764836 -96835094 + AT_rich Low_complexity Low_complexity 1 21 0 2248 97 3 0 chrX 65764905 65765214 -96834716 + AluSp SINE Alu 1 310 -3 1934 129 13 3 chrX 65767630 65767932 -96831998 - AluSx SINE Alu -7 305 1 184 245 20 0 chrX 65768135 65768184 -96831746 + L3b LINE CR1 1323 1372 -211 840 117 0 4 chrX 65768471 65768676 -96831254 + AluSx SINE Alu 2 287 -23 391 292 25 33 chrX 65768695 65768815 -96831115 + MER5B DNA MER1_type 60 178 0 1969 90 34 0 chrX 65769228 65769494 -96830436 - AluSg SINE Alu -14 296 22 1545 162 75 0 chrX 65769573 65769839 -96830091 + AluJb SINE Alu 1 286 -26 1930 116 40 3 chrX 65769945 65770246 -96829684 + AluSx SINE Alu 1 312 0 334 114 0 0 chrX 65770334 65770378 -96829552 + Alu SINE Alu 1 44 -255 1954 124 0 0 chrX 65770862 65771152 -96828778 + AluSx SINE Alu 11 300 -12 2263 84 0 0 chrX 65771154 65771453 -96828477 + AluY SINE Alu 1 299 -12 204 296 173 0 chrX 65771474 65771555 -96828375 - MIR SINE MIR -16 246 152 940 121 0 7 chrX 65771667 65771808 -96828122 - FRAM SINE Alu -17 159 20 2205 114 0 0 chrX 65771861 65772169 -96827761 - AluSq SINE Alu -5 308 1 318 240 107 166 chrX 65772378 65772649 -96827281 - MIR SINE MIR -6 256 2 1925 117 0 11 chrX 65773669 65773952 -96825978 + AluSx SINE Alu 1 280 -32 1695 157 0 0 chrX 65774089 65774375 -96825555 - AluSq SINE Alu -26 287 2 2405 61 0 26 chrX 65774406 65774717 -96825213 + AluY SINE Alu 1 303 -8 873 142 0 20 chrX 65775021 65775169 -96824761 + AluSq/x SINE Alu 1 145 -168 2193 83 0 7 chrX 65775169 65775469 -96824461 + AluY SINE Alu 1 298 -13 1633 95 16 8 chrX 65775486 65775728 -96824202 - AluSp SINE Alu -13 300 57 1997 125 0 0 chrX 65776347 65776643 -96823287 + AluSx SINE Alu 1 296 -16 187 109 0 65 chrX 65778087 65778133 -96821797 + (AGGGGG)n Simple_repeat Simple_repeat 3 45 0 1346 151 49 4 chrX 65778547 65778792 -96821138 + AluJo SINE Alu 1 256 -56 704 152 9 0 chrX 65779075 65779187 -96820743 - FLAM_C SINE Alu -30 113 1 290 258 144 23 chrX 65779283 65779415 -96820515 - L1MC4 LINE L1 -370 7672 7525 2224 85 3 7 chrX 65779425 65779732 -96820198 - AluY SINE Alu -5 306 1 456 93 0 27 chrX 65779732 65779807 -96820123 - AluSg SINE Alu -9 300 228 918 91 63 7 chrX 65779807 65779950 -96819980 - AluSg SINE Alu -159 151 1 451 256 71 48 chrX 65779972 65780140 -96819790 - L1MC4a LINE L1 -466 7342 7171 342 260 19 19 chrX 65780185 65780289 -96819641 - L1MC4 LINE L1 -774 7268 7165 1841 108 80 0 chrX 65780290 65780576 -96819354 - AluSx SINE Alu -3 309 1 2142 97 3 7 chrX 65780617 65780915 -96819015 + AluSx SINE Alu 4 300 -12 869 118 0 8 chrX 65781034 65781161 -96818769 - FLAM_C SINE Alu -12 131 6 24 32 0 0 chrX 65781274 65781305 -96818625 + AT_rich Low_complexity Low_complexity 1 31 0 2111 103 0 3 chrX 65781305 65781595 -96818335 + AluSx SINE Alu 1 289 -23 808 139 47 16 chrX 65781723 65781852 -96818078 - FLAM_C SINE Alu 0 133 1 31 0 0 0 chrX 65781914 65781945 -96817985 + AT_rich Low_complexity Low_complexity 1 31 0 1828 95 73 4 chrX 65781945 65782218 -96817712 + AluSq SINE Alu 1 292 -21 2046 117 0 7 chrX 65782232 65782523 -96817407 + AluSx SINE Alu 1 289 -23 2552 178 53 25 chrX 65782523 65782758 -96817172 + L1MB8 LINE L1 5587 5814 -364 929 214 6 0 chrX 65782758 65782931 -96816999 + FAM SINE Alu 2 175 0 2552 178 53 25 chrX 65782931 65783262 -96816668 + L1MB8 LINE L1 5814 6169 -9 250 193 0 53 chrX 65783421 65783478 -96816452 + L2 LINE L2 3250 3303 -10 2146 94 7 0 chrX 65783478 65783776 -96816154 + AluSx SINE Alu 1 300 -12 1877 100 14 25 chrX 65783776 65783976 -96815954 + HSMAR2 DNA Mariner 108 306 -996 2144 118 0 0 chrX 65783976 65784282 -96815648 + AluSx SINE Alu 1 306 -6 1877 100 14 25 chrX 65784282 65784361 -96815569 + HSMAR2 DNA Mariner 306 384 -918 1983 110 10 39 chrX 65784397 65784705 -96815225 - AluSx SINE Alu -13 299 1 1658 141 29 4 chrX 65784706 65784982 -96814948 - AluJb SINE Alu -29 283 1 696 133 9 9 chrX 65784982 65785095 -96814835 + HSMAR2 DNA Mariner 1096 1208 -94 2141 95 7 0 chrX 65785095 65785378 -96814552 + AluSx SINE Alu 1 285 -27 933 118 0 14 chrX 65785395 65785539 -96814391 + MER4A-int LTR ERV1 6456 6597 -1 2305 73 0 7 chrX 65785541 65785861 -96814069 + AluY SINE Alu 1 311 0 619 124 21 10 chrX 65785870 65785967 -96813963 + MER4A LTR ERV1 1 98 -566 1838 137 9 25 chrX 65785967 65786318 -96813612 + MER4A LTR ERV1 261 664 0 285 75 0 0 chrX 65786402 65786442 -96813488 + (A)n Simple_repeat Simple_repeat 1 40 0 635 108 36 188 chrX 65786589 65786812 -96813118 + MER53 DNA DNA 1 189 0 2460 41 0 0 chrX 65787104 65787397 -96812533 - AluY SINE Alu -18 293 1 2136 111 0 0 chrX 65787504 65787802 -96812128 + AluSx SINE Alu 1 298 -14 755 127 0 37 chrX 65788066 65788200 -96811730 - FLAM_A SINE Alu -1 132 4 2260 88 0 0 chrX 65788571 65788868 -96811062 + AluSg1 SINE Alu 1 297 -12 1574 181 7 0 chrX 65788998 65789302 -96810628 - AluJb SINE Alu 0 307 2 2022 82 14 7 chrX 65789551 65789865 -96810065 - AluY SINE Alu 0 316 1 1806 139 3 32 chrX 65789891 65790200 -96809730 + AluJb SINE Alu 1 300 -12 2038 114 0 26 chrX 65790249 65790555 -96809375 + AluSx SINE Alu 1 298 -14 2248 79 0 7 chrX 65790557 65790876 -96809054 + AluSq SINE Alu 1 317 0 540 0 0 0 chrX 65791076 65791136 -96808794 + (CA)n Simple_repeat Simple_repeat 2 61 0 2132 125 0 3 chrX 65792549 65792860 -96807070 + AluSx SINE Alu 1 310 -2 249 250 145 0 chrX 65792860 65792936 -96806994 + MIR SINE MIR 15 101 -161 2127 121 10 0 chrX 65792942 65793249 -96806681 - AluSx SINE Alu -2 310 1 234 320 27 0 chrX 65793266 65793341 -96806589 + MIR SINE MIR 178 254 -8 2027 140 7 7 chrX 65793916 65794216 -96805714 + AluJo SINE Alu 1 300 -12 766 92 0 0 chrX 65794693 65794791 -96805139 + AluS SINE Alu 2 99 -214 443 18 0 18 chrX 65794825 65794882 -96805048 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 919 75 94 6 chrX 65795031 65795191 -96804739 + MER30 DNA MER1_type 1 174 -56 2350 79 0 54 chrX 65796363 65796680 -96803250 + AluSq SINE Alu 5 304 -9 1904 126 63 0 chrX 65796680 65796966 -96802964 + AluSq SINE Alu 1 304 -9 21 36 0 0 chrX 65796966 65796994 -96802936 + AT_rich Low_complexity Low_complexity 1 28 0 800 105 0 77 chrX 65797012 65797155 -96802775 + FLAM_A SINE Alu 2 133 0 230 236 42 0 chrX 65797178 65797250 -96802680 - L1ME2 LINE L1 -183 5981 5907 * 326 90 194 15 chrX 65797246 65797313 -96802617 - L1MB7 LINE L1 -11 6173 6095 53 17 0 0 chrX 65797315 65797375 -96802555 + AT_rich Low_complexity Low_complexity 1 60 0 1782 147 40 0 chrX 65797375 65797648 -96802282 - AluJb SINE Alu -3 309 26 2273 99 0 0 chrX 65797670 65797986 -96801944 - AluSx SINE Alu 0 316 1 772 178 44 0 chrX 65797987 65798122 -96801808 - AluJo SINE Alu -170 142 2 1001 224 106 6 chrX 65798125 65798446 -96801484 - L1MEc LINE L1 -4074 2322 1966 2251 109 7 0 chrX 65798446 65798740 -96801190 + AluSx SINE Alu 1 296 -16 713 213 0 8 chrX 65798762 65798884 -96801046 + AluJb SINE Alu 2 122 -190 703 155 54 23 chrX 65798884 65799013 -96800917 - L1MC1 LINE L1 -5 6328 6196 2263 119 0 3 chrX 65799050 65799353 -96800577 + AluSx SINE Alu 1 302 -10 2373 72 7 0 chrX 65799358 65799649 -96800281 + AluSp SINE Alu 1 293 -20 2367 60 0 3 chrX 65799652 65799935 -96799995 + AluY SINE Alu 1 282 -29 189 94 0 0 chrX 65799937 65799969 -96799961 + (TTAAA)n Simple_repeat Simple_repeat 3 34 0 2374 111 11 3 chrX 65799981 65800350 -96799580 - L1MC1 LINE L1 -148 6185 5814 1494 224 18 33 chrX 65800420 65800686 -96799244 + L1M4 LINE L1 826 1094 -5448 2540 82 0 0 chrX 65800686 65800991 -96798939 + AluSg SINE Alu 1 305 -5 1494 224 18 33 chrX 65800991 65801088 -96798842 + L1M4 LINE L1 1094 1191 -5351 2548 44 24 0 chrX 65801088 65801382 -96798548 - AluY SINE Alu -10 301 1 1494 224 18 33 chrX 65801382 65801684 -96798246 + L1M4 LINE L1 1191 1569 -4973 225 0 0 0 chrX 65801697 65801722 -96798208 + (TCTCCC)n Simple_repeat Simple_repeat 5 29 0 5965 80 22 22 chrX 65801730 65802596 -96797334 + SVA Other Other 1 866 -520 1463 106 0 35 chrX 65802711 65802933 -96796997 + AluSg/x SINE Alu 92 306 0 1160 166 0 0 chrX 65802936 65803105 -96796825 + AluJo/FRAM SINE Alu 129 297 -15 426 234 48 8 chrX 65803105 65803229 -96796701 - LTR67 LTR ERVL -77 480 352 338 337 235 4 chrX 65803454 65803697 -96796233 - L2 LINE L2 -888 2426 2128 1854 209 83 57 chrX 65803700 65803753 -96796177 - LTR68 LTR ERV1 -4 736 686 2503 79 3 0 chrX 65803753 65804057 -96795873 + AluSp SINE Alu 4 308 -5 1854 209 83 57 chrX 65804057 65804581 -96795349 - LTR68 LTR ERV1 -54 686 144 2006 155 3 0 chrX 65804662 65804958 -96794972 + AluSx SINE Alu 1 297 -15 2415 97 0 3 chrX 65804961 65805272 -96794658 + AluY SINE Alu 1 310 -1 231 0 0 0 chrX 65805339 65805366 -96794564 + LTR40a LTR ERVL 493 519 0 676 304 88 69 chrX 65805367 65805461 -96794469 - L2 LINE L2 -1178 2136 2045 2285 98 0 10 chrX 65805461 65805756 -96794174 + AluSx SINE Alu 1 292 -20 676 304 88 69 chrX 65805756 65806266 -96793664 - L2 LINE L2 -1269 2045 1521 968 158 12 36 chrX 65806528 65806693 -96793237 + AluJo SINE Alu 1 161 -151 241 235 0 0 chrX 65806693 65806744 -96793186 + LTR30 LTR ERV1 2 52 -670 1591 86 103 52 chrX 65806745 65807101 -96792829 + LTR12 LTR ERV1 57 285 -429 380 200 11 0 chrX 65807102 65807192 -96792738 + LTR30 LTR ERV1 553 643 -79 663 103 55 24 chrX 65807192 65807328 -96792602 + LTR12 LTR ERV1 301 714 0 * 6281 109 10 30 chrX 65807328 65808128 -96791802 + HERV9 LTR ERV1 65 845 -7554 2275 93 7 3 chrX 65808128 65808428 -96791502 - AluSq SINE Alu -12 301 1 6281 109 10 30 chrX 65808428 65808582 -96791348 + HERV9 LTR ERV1 845 1000 -7399 * 27571 83 8 8 chrX 65808581 65808659 -96791271 + HERV9 LTR ERV1 1165 1242 -7157 182 37 37 0 chrX 65808659 65808686 -96791244 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 27571 83 8 8 chrX 65808686 65812402 -96787528 + HERV9 LTR ERV1 1241 4959 -3440 369 206 0 0 chrX 65812402 65812504 -96787426 + GA-rich Low_complexity Low_complexity 1 102 0 2193 197 96 63 chrX 65812507 65813353 -96786577 + Harlequin LTR ERV1 867 1740 -5156 * 5545 84 9 8 chrX 65813351 65814124 -96785806 + Harlequin LTR ERV1 7626 8399 0 250 231 0 0 chrX 65814124 65814176 -96785754 + LTR30 LTR ERV1 1 52 -670 1186 59 267 0 chrX 65814176 65814363 -96785567 + LTR12 LTR ERV1 53 289 -425 344 174 0 0 chrX 65814363 65814432 -96785498 + LTR30 LTR ERV1 556 624 -98 718 131 3 0 chrX 65814432 65814551 -96785379 + LTR12 LTR ERV1 359 713 -1 288 223 15 100 chrX 65814551 65814633 -96785297 + L1MC4a LINE L1 5796 5865 -1943 1313 91 56 65 chrX 65814633 65814757 -96785173 + MER30 DNA MER1_type 1 125 -105 2194 99 3 3 chrX 65814757 65815069 -96784861 - AluSx SINE Alu 0 312 1 1313 91 56 65 chrX 65815069 65815175 -96784755 + MER30 DNA MER1_type 125 230 0 288 223 15 100 chrX 65815175 65815222 -96784708 + L1MC4a LINE L1 5865 5914 -1894 1395 163 85 50 chrX 65815225 65815507 -96784423 - AluJo SINE Alu -18 294 3 2222 81 24 14 chrX 65815909 65816204 -96783726 + AluSg SINE Alu 13 310 0 23 0 0 0 chrX 65816313 65816336 -96783594 + GC_rich Low_complexity Low_complexity 1 23 0 2669 36 0 13 chrX 65817245 65817552 -96782378 + AluY SINE Alu 1 303 -8 432 333 17 6 chrX 65817826 65818003 -96781927 + L2 LINE L2 228 406 -2908 818 61 0 0 chrX 65818042 65818141 -96781789 + HY3 scRNA scRNA 1 99 -2 234 0 0 0 chrX 65818141 65818164 -96781766 + (CAA)n Simple_repeat Simple_repeat 1 49 0 234 0 0 0 chrX 65818164 65818190 -96781740 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2086 103 43 0 chrX 65818203 65818485 -96781445 + AluSx SINE Alu 11 304 -8 722 107 0 8 chrX 65818488 65818609 -96781321 - L1 LINE L1 -1293 4853 4734 1075 62 0 0 chrX 65818649 65818778 -96781152 + AluY SINE Alu 166 294 -17 684 179 58 76 chrX 65818852 65819076 -96780854 - MLT1A2 LTR MaLR 0 374 155 26 0 0 0 chrX 65819102 65819128 -96780802 + AT_rich Low_complexity Low_complexity 1 26 0 6715 62 46 22 chrX 65819287 65820213 -96779717 + SVA Other Other 438 1386 0 306 247 43 32 chrX 65820242 65820277 -96779653 - L1MC4 LINE L1 -1341 6701 6668 2386 96 0 3 chrX 65820277 65820580 -96779350 + AluSg SINE Alu 1 302 -8 306 247 43 32 chrX 65820580 65820637 -96779293 - L1MC4 LINE L1 -1374 6668 6608 735 194 47 9 chrX 65820671 65820697 -96779233 + L1M4c LINE L1 1300 1324 -5059 1912 166 0 7 chrX 65820697 65820848 -96779082 - AluJo SINE Alu -25 287 137 2371 95 0 32 chrX 65820848 65821164 -96778766 - AluSq SINE Alu -7 306 1 1912 166 0 7 chrX 65821164 65821301 -96778629 - AluJo SINE Alu -175 137 1 735 194 47 9 chrX 65821301 65821458 -96778472 + L1M4c LINE L1 1324 1863 -4520 771 119 8 32 chrX 65821460 65821586 -96778344 - FLAM_C SINE Alu -9 134 12 1110 239 36 10 chrX 65821598 65821748 -96778182 + L1M4c LINE L1 2190 2335 -4047 2604 68 0 0 chrX 65821748 65822058 -96777872 + AluY SINE Alu 1 310 -1 1110 239 36 10 chrX 65822058 65822397 -96777533 + L1M4c LINE L1 2335 2695 -3687 2567 143 37 14 chrX 65822397 65822830 -96777100 - MSTB2 LTR MaLR 0 457 15 4748 205 71 86 chrX 65822833 65823398 -96776532 + L1M4c LINE L1 2691 3263 -3119 2040 118 7 20 chrX 65823398 65823695 -96776235 + AluSx SINE Alu 1 293 -19 4748 205 71 86 chrX 65823695 65823745 -96776185 + L1M4c LINE L1 3263 3312 -3070 578 184 0 26 chrX 65823745 65823859 -96776071 + FLAM_C SINE Alu 33 143 0 4748 205 71 86 chrX 65823859 65823983 -96775947 + L1M4c LINE L1 3312 3436 -2946 3473 147 24 65 chrX 65823983 65824704 -96775226 + LTR8 LTR ERV1 1 691 0 4748 205 71 86 chrX 65824704 65824725 -96775205 + L1M4c LINE L1 3436 3456 -2926 2031 143 3 3 chrX 65824725 65825025 -96774905 + AluSx SINE Alu 1 300 -12 4748 205 71 86 chrX 65825025 65825281 -96774649 + L1M4c LINE L1 3456 3714 -2668 2455 71 0 3 chrX 65825281 65825576 -96774354 - AluY SINE Alu -17 294 1 2231 107 3 3 chrX 65825576 65825874 -96774056 - AluSg SINE Alu -12 298 1 4748 205 71 86 chrX 65825874 65826400 -96773530 + L1M4c LINE L1 3713 4245 -2137 2355 94 7 0 chrX 65826400 65826699 -96773231 - AluSp SINE Alu -12 301 1 4748 205 71 86 chrX 65826699 65827063 -96772867 + L1M4c LINE L1 4245 4808 -1574 262 86 0 0 chrX 65827087 65827122 -96772808 + AluSx SINE Alu 3 37 -265 243 214 169 85 chrX 65827583 65827624 -96772306 - HAL1 LINE L1 -302 2205 2169 2161 85 0 4 chrX 65827624 65827895 -96772035 + AluSx SINE Alu 29 298 -14 2272 86 3 13 chrX 65827899 65828223 -96771707 + AluY SINE Alu 1 321 0 243 214 169 85 chrX 65828223 65828376 -96771554 - HAL1 LINE L1 -340 2167 1988 2617 53 0 0 chrX 65828419 65828723 -96771207 - AluY SINE Alu -7 304 1 28 29 0 0 chrX 65828862 65828897 -96771033 + AT_rich Low_complexity Low_complexity 1 35 0 799 293 149 30 chrX 65828897 65829314 -96770616 - L2 LINE L2 -1212 2102 1593 2467 70 30 0 chrX 65829314 65829612 -96770318 + AluSq SINE Alu 1 307 -6 799 293 149 30 chrX 65829612 65829785 -96770145 - L2 LINE L2 -1721 1593 1442 342 200 25 25 chrX 65829789 65829869 -96770061 + MIR SINE MIR 179 258 -4 2209 122 0 0 chrX 65829979 65830274 -96769656 - AluSx SINE Alu -17 295 1 2468 79 0 19 chrX 65830331 65830646 -96769284 - AluY SINE Alu -2 309 1 1040 126 0 0 chrX 65830758 65830893 -96769037 + AluSq/x SINE Alu 1 135 -178 1864 170 3 22 chrX 65830893 65831211 -96768719 + AluJb SINE Alu 1 312 0 2111 110 7 3 chrX 65831271 65831553 -96768377 + AluSq SINE Alu 1 283 -30 639 26 0 0 chrX 65831553 65831630 -96768300 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 2087 144 7 3 chrX 65831640 65831945 -96767985 + AluJb SINE Alu 1 306 -6 2003 149 17 3 chrX 65831947 65832248 -96767682 + AluSx SINE Alu 1 305 -7 2538 113 20 74 chrX 65832649 65832852 -96767078 + Tigger2a DNA MER2_type 1 214 -2494 1699 174 11 11 chrX 65832852 65833156 -96766774 - AluJb SINE Alu 0 304 1 2584 51 0 26 chrX 65833164 65833476 -96766454 - AluY SINE Alu -7 304 1 2538 113 20 74 chrX 65833476 65833650 -96766280 + Tigger2a DNA MER2_type 221 403 -2305 2380 94 0 3 chrX 65833650 65833957 -96765973 + AluSg SINE Alu 1 306 -4 2538 113 20 74 chrX 65833957 65833971 -96765959 + Tigger2a DNA MER2_type 403 416 -2292 1987 141 0 17 chrX 65833971 65834291 -96765639 + AluSx SINE Alu 1 312 0 2538 113 20 74 chrX 65834291 65834345 -96765585 + Tigger2a DNA MER2_type 416 434 0 1504 166 9 68 chrX 65834354 65834563 -96765367 + L1M4 LINE L1 4832 5052 -1094 2304 95 0 7 chrX 65834563 65834859 -96765071 - AluSq SINE Alu -19 294 1 1504 166 9 68 chrX 65834859 65834887 -96765043 + L1M4 LINE L1 5052 5080 -1066 2472 84 3 0 chrX 65834887 65835197 -96764733 + AluY SINE Alu 1 311 0 1504 166 9 68 chrX 65835197 65835295 -96764635 + L1M4 LINE L1 5080 5148 -998 1233 90 60 0 chrX 65835295 65835461 -96764469 + AluSg/x SINE Alu 131 306 -6 204 384 27 27 chrX 65835589 65835735 -96764195 + L2 LINE L2 3116 3261 -11 350 320 13 13 chrX 65836354 65836507 -96763423 + GA-rich Low_complexity Low_complexity 3 155 0 662 115 8 72 chrX 65840606 65840831 -96759099 + AluSg1 SINE Alu 2 309 0 1321 94 0 0 chrX 65841447 65841617 -96758313 + AluSq SINE Alu 144 313 0 970 121 0 0 chrX 65841904 65842036 -96757894 + AluSq/x SINE Alu 1 132 -180 2130 78 0 0 chrX 65842036 65842293 -96757637 + AluSq SINE Alu 39 295 -18 1759 97 126 11 chrX 65844808 65845077 -96754853 + AluSg SINE Alu 1 300 0 2170 115 0 0 chrX 65845419 65845707 -96754223 - AluSg SINE Alu -20 290 3 2006 60 0 8 chrX 65845723 65845972 -96753958 - AluY SINE Alu -20 291 45 1943 112 17 37 chrX 65845979 65846275 -96753655 - AluSc SINE Alu -10 299 10 2266 98 7 3 chrX 65846287 65846584 -96753346 - AluSx SINE Alu -14 298 1 2094 124 3 0 chrX 65847290 65847589 -96752341 + AluY SINE Alu 1 300 -11 2233 120 0 7 chrX 65847620 65847921 -96752009 - AluSx SINE Alu -13 299 1 202 240 60 0 chrX 65847998 65848048 -96751882 - MIR SINE MIR -59 149 97 355 121 0 0 chrX 65848197 65848255 -96751675 + L1MB2 LINE L1 6108 6165 -6 760 239 25 6 chrX 65848256 65848415 -96751515 - FRAM SINE Alu -19 157 1 596 207 9 17 chrX 65848449 65848565 -96751365 + FLAM_A SINE Alu 2 116 -17 538 229 42 7 chrX 65848572 65848716 -96751214 + L1MC5 LINE L1 7783 7931 -30 2293 108 0 0 chrX 65848722 65849018 -96750912 + AluSq SINE Alu 1 296 -17 219 88 0 0 chrX 65850476 65850510 -96749420 + (CTG)n Simple_repeat Simple_repeat 1 34 0 225 191 0 0 chrX 65850824 65850871 -96749059 + A-rich Low_complexity Low_complexity 1 47 0 1580 131 0 9 chrX 65850871 65851093 -96748837 + AluJo SINE Alu 1 220 -92 1069 171 21 68 chrX 65851093 65851154 -96748776 + AluJo SINE Alu 86 148 -164 2060 123 17 0 chrX 65851154 65851454 -96748476 + AluSg SINE Alu 1 305 -5 1069 171 21 68 chrX 65851454 65851626 -96748304 + AluJo SINE Alu 148 308 -4 2455 86 0 13 chrX 65851629 65851942 -96747988 + AluY SINE Alu 1 309 -2 24 0 0 0 chrX 65851942 65851966 -96747964 + AT_rich Low_complexity Low_complexity 1 24 0 393 284 156 23 chrX 65852254 65852472 -96747458 + MIR SINE MIR 11 257 -5 2022 125 52 0 chrX 65852528 65852817 -96747113 + AluSp SINE Alu 1 304 -9 1595 146 115 28 chrX 65852819 65853106 -96746824 + AluJo SINE Alu 1 312 0 24 0 0 0 chrX 65853188 65853212 -96746718 + AT_rich Low_complexity Low_complexity 1 24 0 1605 160 3 72 chrX 65853219 65853537 -96746393 + AluJo SINE Alu 7 302 -10 2099 122 0 10 chrX 65853539 65853833 -96746097 + AluSx SINE Alu 1 291 -21 2092 131 3 0 chrX 65853839 65854130 -96745800 + AluSq SINE Alu 1 292 -21 459 292 52 34 chrX 65854332 65854565 -96745365 + L1ME LINE L1 5588 5824 -297 651 248 172 23 chrX 65854718 65854980 -96744950 - L2 LINE L2 -5 3308 3008 27 0 0 0 chrX 65855048 65855075 -96744855 + AT_rich Low_complexity Low_complexity 1 27 0 421 214 209 0 chrX 65855105 65855325 -96744605 - L1ME4a LINE L1 -27 6094 5829 279 242 141 20 chrX 65855348 65855447 -96744483 - L1ME4a LINE L1 -351 5770 5660 430 246 87 27 chrX 65855567 65855750 -96744180 - L1ME LINE L1 -299 5822 5629 357 182 8 3 chrX 65856599 65856746 -96743184 + MER53 DNA DNA 1 189 0 308 276 6 52 chrX 65857809 65857983 -96741947 + GA-rich Low_complexity Low_complexity 3 168 0 636 198 63 0 chrX 65858645 65858771 -96741159 + MER3 DNA MER1_type 5 138 -71 1820 165 7 19 chrX 65858773 65859082 -96740848 + AluJb SINE Alu 1 305 -7 2379 58 7 14 chrX 65859150 65859442 -96740488 + AluY SINE Alu 1 290 -21 1557 194 24 7 chrX 65859518 65859811 -96740119 - AluJb SINE Alu -12 300 3 1074 90 6 39 chrX 65859822 65859978 -96739952 - AluSg/x SINE Alu -21 291 141 2317 85 3 0 chrX 65859991 65860284 -96739646 - AluSx SINE Alu -18 294 1 1844 160 10 3 chrX 65860587 65860880 -96739050 - AluJb SINE Alu -14 298 4 366 289 56 14 chrX 65860974 65861116 -96738814 - L2 LINE L2 -433 2881 2734 456 174 160 17 chrX 65861133 65861293 -96738637 - HAL1b LINE L1 -3 6118 1169 279 93 0 0 chrX 65861293 65861336 -96738594 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1925 175 96 31 chrX 65861426 65861872 -96738058 - MLT1D LTR MaLR 0 505 31 1084 332 36 41 chrX 65861887 65862423 -96737507 - L2 LINE L2 -634 2680 2146 2487 57 7 3 chrX 65862423 65862720 -96737210 + AluY SINE Alu 1 298 -13 1084 332 36 41 chrX 65862720 65862813 -96737117 - L2 LINE L2 -1168 2146 2054 2196 89 3 71 chrX 65862826 65863150 -96736780 - AluSg SINE Alu -8 302 1 1252 105 0 50 chrX 65863150 65863331 -96736599 - AluSg/x SINE Alu -8 304 133 213 65 0 0 chrX 65863331 65863362 -96736568 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2368 78 0 0 chrX 65863362 65863643 -96736287 - AluSg SINE Alu -29 281 1 4020 191 79 66 chrX 65863841 65864270 -96735660 + L1MB8 LINE L1 4103 4525 -1653 1484 106 9 53 chrX 65864270 65864496 -96735434 - AluSg/x SINE Alu -10 300 85 1905 100 24 4 chrX 65864498 65864747 -96735183 + AluSq SINE Alu 46 299 -14 4020 191 79 66 chrX 65864747 65865087 -96734843 + L1MB8 LINE L1 4525 4859 -1319 1520 73 0 0 chrX 65865087 65865264 -96734666 - AluSx SINE Alu -133 179 3 4020 191 79 66 chrX 65865264 65865579 -96734351 + L1MB8 LINE L1 4859 5168 -1010 2380 89 3 0 chrX 65865579 65865872 -96734058 + AluSx SINE Alu 3 296 -16 4020 191 79 66 chrX 65865872 65866537 -96733393 + L1MB8 LINE L1 5168 5995 -183 25 0 0 0 chrX 65866553 65866578 -96733352 + AT_rich Low_complexity Low_complexity 1 25 0 600 186 66 0 chrX 65866633 65866788 -96733142 + L1MB7 LINE L1 5952 6123 -57 2297 108 7 0 chrX 65866789 65867094 -96732836 - AluSg SINE Alu -3 307 1 22 56 0 0 chrX 65867094 65867130 -96732800 + AT_rich Low_complexity Low_complexity 1 36 0 2073 101 10 49 chrX 65867145 65867453 -96732477 - AluSg SINE Alu -14 296 1 2007 133 14 0 chrX 65867456 65867742 -96732188 - AluSx SINE Alu -22 290 1 2376 86 0 29 chrX 65867742 65868056 -96731874 - AluY SINE Alu -5 306 1 1585 96 4 96 chrX 65868127 65868388 -96731542 - AluSg/x SINE Alu -6 306 70 639 182 13 38 chrX 65868388 65868547 -96731383 - LTR7 LTR ERV1 0 450 296 823 116 7 14 chrX 65868790 65868928 -96731002 - LTR7 LTR ERV1 -313 137 1 3715 109 4 9 chrX 65868928 65869488 -96730442 - HERVH LTR ERV1 0 7713 7157 * 7297 122 10 14 chrX 65869481 65869637 -96730293 - HERVH LTR ERV1 -1697 6016 5861 2504 70 0 7 chrX 65869637 65869936 -96729994 + AluY SINE Alu 1 297 -14 7297 122 10 14 chrX 65869936 65870948 -96728982 - HERVH LTR ERV1 -1852 5861 4853 1588 165 31 54 chrX 65870948 65871488 -96728442 + SVA Other Other 432 850 -536 6649 116 1 58 chrX 65871609 65872739 -96727191 - HERVH LTR ERV1 -2848 4865 3800 * 17122 135 20 22 chrX 65872727 65874035 -96725895 - HERVH LTR ERV1 -4126 3587 2278 2430 74 0 3 chrX 65874035 65874332 -96725598 + AluY SINE Alu 1 296 -15 17122 135 20 22 chrX 65874332 65876293 -96723637 - HERVH LTR ERV1 -5435 2278 1 650 181 6 38 chrX 65876293 65876453 -96723477 - LTR7 LTR ERV1 0 450 296 845 122 0 14 chrX 65876701 65876840 -96723090 - LTR7 LTR ERV1 -313 137 1 1119 175 25 10 chrX 65876840 65877040 -96722890 - AluJo SINE Alu -103 209 7 401 127 0 0 chrX 65877045 65877108 -96722822 + L1MB8 LINE L1 6111 6173 -5 2100 130 0 22 chrX 65877417 65877594 -96722336 - AluSx SINE Alu -3 309 141 2492 72 3 3 chrX 65877594 65877899 -96722031 - AluY SINE Alu -4 307 3 2100 130 0 22 chrX 65877899 65878037 -96721893 - AluSx SINE Alu -171 141 1 2143 123 3 3 chrX 65878088 65878390 -96721540 + AluSp SINE Alu 1 302 -11 2331 99 3 0 chrX 65878412 65878715 -96721215 + AluSx SINE Alu 5 308 -4 1225 181 158 23 chrX 65878720 65878975 -96720955 + AluJb SINE Alu 1 295 -7 2188 122 0 22 chrX 65878975 65879294 -96720636 + AluSx SINE Alu 1 312 0 2025 116 14 14 chrX 65879563 65879857 -96720073 + AluSg SINE Alu 1 294 -16 297 190 23 0 chrX 65879875 65879949 -96719981 + L1ME4a LINE L1 5746 5826 -295 444 240 76 18 chrX 65879983 65880044 -96719886 + L1ME4a LINE L1 5941 5997 -124 2253 112 0 19 chrX 65880044 65880356 -96719574 + AluSx SINE Alu 1 306 -6 444 240 76 18 chrX 65880356 65880465 -96719465 + L1ME4a LINE L1 5997 6121 0 2394 90 7 3 chrX 65880513 65880814 -96719116 - AluSq SINE Alu -11 302 1 2474 94 0 0 chrX 65880901 65881208 -96718722 + AluSc SINE Alu 1 307 -2 2137 150 0 0 chrX 65881526 65881839 -96718091 + AluSq SINE Alu 1 313 0 304 279 318 6 chrX 65881839 65882018 -96717912 - MIR SINE MIR -8 254 20 2513 75 3 0 chrX 65882053 65882358 -96717572 + AluY SINE Alu 1 306 -5 954 89 0 0 chrX 65882368 65882491 -96717439 + AluSp/q SINE Alu 188 310 -3 27 0 0 0 chrX 65882496 65882523 -96717407 + AT_rich Low_complexity Low_complexity 1 27 0 1201 137 127 5 chrX 65882523 65882720 -96717210 - AluJb SINE Alu -24 288 68 849 101 101 7 chrX 65882720 65882858 -96717072 - AluSq/x SINE Alu -161 151 1 319 131 48 107 chrX 65882882 65882938 -96716992 - L1ME4a LINE L1 -2 6119 6068 2154 102 7 23 chrX 65882938 65883242 -96716688 + AluSx SINE Alu 1 299 -13 319 131 48 107 chrX 65883242 65883269 -96716661 - L1ME4a LINE L1 -53 6068 6041 1667 157 91 3 chrX 65883271 65883557 -96716373 - AluSx SINE Alu -1 311 1 30 0 0 61 chrX 65883557 65883587 -96716343 + AT_rich Low_complexity Low_complexity 1 30 -16 2418 50 4 0 chrX 65883587 65883894 -96716036 + AluY SINE Alu 1 308 0 30 0 0 61 chrX 65883894 65883911 -96716019 + AT_rich Low_complexity Low_complexity 30 46 0 819 108 50 0 chrX 65883913 65884033 -96715897 - AluSg/x SINE Alu -30 280 155 1115 160 50 0 chrX 65884051 65884270 -96715660 - L1MC1 LINE L1 -11 6322 6093 1661 161 12 22 chrX 65884275 65884598 -96715332 - L1MC1 LINE L1 0 6333 6014 1722 145 6 44 chrX 65884620 65884938 -96714992 - AluJb SINE Alu -1 311 6 251 75 0 50 chrX 65884977 65885017 -96714913 - L1ME LINE L1 -352 5769 5732 394 275 51 22 chrX 65885017 65885155 -96714775 - MIR SINE MIR -113 149 8 867 128 11 11 chrX 65885954 65886133 -96713797 + GA-rich Low_complexity Low_complexity 2 180 0 306 125 0 0 chrX 65892359 65892407 -96707523 + (TC)n Simple_repeat Simple_repeat 2 49 0 216 0 0 0 chrX 65896066 65896090 -96703840 + (T)n Simple_repeat Simple_repeat 1 24 0 230 288 0 0 chrX 65896926 65896985 -96702945 + G-rich Low_complexity Low_complexity 1 59 0 825 124 8 0 chrX 65897467 65897588 -96702342 + FLAM_C SINE Alu 6 127 -16 192 77 0 0 chrX 65900073 65900099 -96699831 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 246 95 0 0 chrX 65901727 65901769 -96698161 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 1607 181 7 7 chrX 65902029 65902316 -96697614 + AluJb SINE Alu 1 287 -25 229 341 41 107 chrX 65902424 65902709 -96697221 - L2 LINE L2 -553 2761 2459 1843 116 14 14 chrX 65902709 65903004 -96696926 + AluSx SINE Alu 11 305 0 229 341 41 107 chrX 65903004 65903123 -96696807 - L2 LINE L2 -855 2459 2381 2396 76 0 0 chrX 65903123 65903426 -96696504 - AluSc SINE Alu -6 303 1 369 0 0 0 chrX 65903455 65903496 -96696434 + (TG)n Simple_repeat Simple_repeat 1 41 0 206 208 349 9 chrX 65903586 65903692 -96696238 + MIR3 SINE MIR 4 145 -63 430 309 144 13 chrX 65903787 65904023 -96695907 - L2 LINE L2 -1009 2305 2039 2158 109 0 0 chrX 65904279 65904602 -96695328 + AluSx SINE Alu 6 328 0 978 187 23 0 chrX 65904645 65904816 -96695114 + MER96 DNA MER1_type 1 175 0 1206 107 117 0 chrX 65904930 65905127 -96694803 + AluSg/x SINE Alu 77 296 -14 2155 116 0 3 chrX 65905127 65905437 -96694493 + AluSg SINE Alu 1 309 -1 654 186 6 18 chrX 65905437 65905604 -96694326 + GA-rich Low_complexity Low_complexity 1 165 0 355 163 24 187 chrX 65905866 65905933 -96693997 - MER81 DNA DNA 0 114 74 2423 70 0 3 chrX 65905933 65906245 -96693685 + AluY SINE Alu 1 311 0 355 163 24 187 chrX 65906245 65906300 -96693630 - MER81 DNA DNA -40 74 12 2013 101 0 14 chrX 65906506 65906906 -96693024 + AluSx SINE Alu 1 396 0 624 253 96 11 chrX 65906940 65907118 -96692812 + MIR SINE MIR 49 241 -21 2141 114 13 0 chrX 65907834 65908142 -96691788 - AluSx SINE Alu 0 312 1 510 244 149 46 chrX 65908142 65908372 -96691558 + MIR SINE MIR 6 246 -14 2170 88 3 7 chrX 65908487 65908784 -96691146 + AluSx SINE Alu 1 296 -16 1016 158 6 0 chrX 65908938 65909096 -96690834 + FRAM SINE Alu 1 159 -7 677 231 48 21 chrX 65909186 65909372 -96690558 - MIR SINE MIR 0 262 72 2207 84 10 3 chrX 65909381 65909677 -96690253 - AluSp SINE Alu -15 298 1 245 242 45 0 chrX 65909739 65909805 -96690125 - L3b LINE CR1 -278 1305 1237 535 161 34 0 chrX 65910267 65910375 -96689555 + CT-rich Low_complexity Low_complexity 3 117 -7 1978 155 0 0 chrX 65910375 65910684 -96689246 - AluSx SINE Alu -3 309 1 240 35 0 0 chrX 65910727 65910756 -96689174 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 1949 146 13 0 chrX 65910756 65911057 -96688873 - AluSx SINE Alu -7 305 1 594 169 100 77 chrX 65911064 65911083 -96688847 - FLAM_A SINE Alu -169 133 116 207 0 0 0 chrX 65911083 65911106 -96688824 + (TGG)n Simple_repeat Simple_repeat 3 25 0 594 169 100 77 chrX 65911106 65911216 -96688714 - FLAM_A SINE Alu -186 116 1 194 294 91 35 chrX 65911269 65911412 -96688518 - L2 LINE L2 -155 3117 2967 354 317 101 48 chrX 65911412 65911581 -96688349 + L2 LINE L2 2447 2637 -677 806 168 16 0 chrX 65911581 65911706 -96688224 - FLAM_A SINE Alu -6 127 1 354 317 101 48 chrX 65911706 65911804 -96688126 + L2 LINE L2 2637 2728 -586 2323 75 7 0 chrX 65911813 65912107 -96687823 - AluSx SINE Alu -16 296 1 2162 115 0 13 chrX 65912107 65912418 -96687512 - AluSx SINE Alu -4 308 1 362 286 101 48 chrX 65913192 65913360 -96686570 - MIR SINE MIR -70 192 16 2438 44 0 10 chrX 65914107 65914405 -96685525 + AluY SINE Alu 1 295 -16 504 205 0 0 chrX 65914405 65914488 -96685442 - AluJo/FLAM SINE Alu -194 118 36 327 104 0 0 chrX 65914494 65914542 -96685388 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 1686 167 6 35 chrX 65914542 65914860 -96685070 - AluJo SINE Alu -3 309 1 293 338 169 0 chrX 65915199 65915353 -96684577 - MIR3 SINE MIR 0 208 29 364 232 155 19 chrX 65918403 65918558 -96681372 - MIR SINE MIR -20 242 67 22 0 0 0 chrX 65918656 65918678 -96681252 + AT_rich Low_complexity Low_complexity 1 22 0 1926 115 35 3 chrX 65918678 65918966 -96680964 + AluSx SINE Alu 1 297 -15 1638 152 0 25 chrX 65919078 65919355 -96680575 - AluJo SINE Alu -32 280 11 396 0 0 0 chrX 65919850 65919894 -96680036 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2251 87 30 0 chrX 65920032 65920332 -96679598 + AluSc SINE Alu 1 309 0 1902 121 14 0 chrX 65920417 65920741 -96679189 + AluSg SINE Alu 1 328 0 858 92 7 64 chrX 65920746 65920887 -96679043 + FLAM_C SINE Alu 1 133 0 2120 46 0 11 chrX 65920987 65921250 -96678680 - AluY SINE Alu -51 260 1 1199 143 0 61 chrX 65921312 65921543 -96678387 + AluJo SINE Alu 42 258 -54 342 0 0 0 chrX 65921551 65921589 -96678341 + (TAA)n Simple_repeat Simple_repeat 2 39 0 823 248 75 5 chrX 65921617 65921831 -96678099 - MIR SINE MIR -2 260 32 2357 53 0 10 chrX 65921839 65922138 -96677792 - AluY SINE Alu -15 296 1 850 66 0 0 chrX 65922144 65922250 -96677680 - AluSg/x SINE Alu -16 296 191 2241 103 0 0 chrX 65922428 65922730 -96677200 - AluSx SINE Alu -10 302 1 498 270 88 31 chrX 65923333 65923492 -96676438 - MIR SINE MIR -70 192 25 357 24 0 0 chrX 65923593 65923635 -96676295 + (CA)n Simple_repeat Simple_repeat 1 42 0 345 345 72 15 chrX 65924211 65924413 -96675517 - MIR SINE MIR -55 207 4 2422 60 3 0 chrX 65924569 65924867 -96675063 + AluSp SINE Alu 1 299 -14 923 102 31 0 chrX 65925934 65926061 -96673869 + FLAM_C SINE Alu 1 131 -12 2090 89 43 0 chrX 65926699 65926980 -96672950 - AluSx SINE Alu -19 293 1 485 313 55 15 chrX 65927058 65927362 -96672568 - L2 LINE L2 -177 3095 2774 834 294 37 12 chrX 65927474 65927719 -96672211 - MIR SINE MIR -7 255 5 202 216 0 0 chrX 65928260 65928297 -96671633 + GA-rich Low_complexity Low_complexity 2 38 0 2351 73 13 0 chrX 65928306 65928607 -96671323 + AluY SINE Alu 1 305 -6 1681 165 4 0 chrX 65928704 65928983 -96670947 - AluJb SINE Alu -13 299 20 2214 94 7 0 chrX 65929043 65929340 -96670590 + AluSp SINE Alu 3 301 -12 2341 77 0 0 chrX 65930247 65930545 -96669385 + AluSc SINE Alu 3 300 -9 933 182 0 18 chrX 65930599 65930769 -96669161 - AluJb SINE Alu -9 303 137 2041 115 30 0 chrX 65930772 65931068 -96668862 - AluSx SINE Alu -7 305 1 691 145 0 73 chrX 65931158 65931320 -96668610 - FLAM_C SINE Alu 0 153 1 1414 172 105 4 chrX 65931392 65931659 -96668271 - AluSx SINE Alu -7 305 12 534 152 0 0 chrX 65931659 65931751 -96668179 + T-rich Low_complexity Low_complexity 1 92 0 1812 168 3 16 chrX 65931761 65932071 -96667859 - AluJo SINE Alu -6 306 1 2239 94 3 0 chrX 65932630 65932927 -96667003 + AluSg SINE Alu 1 298 -12 465 19 0 0 chrX 65933032 65933086 -96666844 + (TG)n Simple_repeat Simple_repeat 1 54 0 1899 94 41 0 chrX 65933086 65933352 -96666578 - AluSg SINE Alu -33 277 1 1162 92 0 24 chrX 65933385 65933549 -96666381 + AluSq SINE Alu 1 160 -153 237 33 0 0 chrX 65933549 65933579 -96666351 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2179 103 0 7 chrX 65933766 65934066 -96665864 - AluSx SINE Alu -14 298 1 1685 136 13 79 chrX 65934142 65934301 -96665629 - AluSx SINE Alu -17 295 166 2218 62 3 49 chrX 65934301 65934608 -96665322 - AluY SINE Alu -18 293 1 1685 136 13 79 chrX 65934608 65934764 -96665166 - AluSx SINE Alu -146 166 1 571 281 48 24 chrX 65934775 65934985 -96664945 + L2 LINE L2 1792 2006 -1308 2082 132 3 3 chrX 65934995 65935306 -96664624 - AluSx SINE Alu -1 311 1 476 256 44 44 chrX 65935332 65935345 -96664585 + L1PA3 LINE L1 5928 5940 -215 1178 119 99 10 chrX 65935345 65935547 -96664383 + L1PA13 LINE L1 5943 6162 -1 476 256 44 44 chrX 65935547 65935559 -96664371 + L1PA3 LINE L1 5939 6154 -1 2462 99 0 3 chrX 65935611 65935924 -96664006 + AluSx SINE Alu 1 312 0 2097 101 0 80 chrX 65935958 65936161 -96663769 + AluSx SINE Alu 3 172 -140 2353 93 30 0 chrX 65936161 65936281 -96663649 + AluY SINE Alu 1 116 -195 495 0 0 0 chrX 65936281 65936336 -96663594 + (CA)n Simple_repeat Simple_repeat 2 56 0 2353 93 30 0 chrX 65936336 65936517 -96663413 + AluY SINE Alu 116 311 0 2097 101 0 80 chrX 65936517 65936640 -96663290 + AluSx SINE Alu 172 303 -9 1999 158 16 3 chrX 65936672 65936976 -96662954 - AluJb SINE Alu -4 308 1 383 211 51 51 chrX 65937001 65937045 -96662885 - L1ME4a LINE L1 -174 5947 5904 2300 92 0 0 chrX 65937045 65937362 -96662568 - AluSx SINE Alu 0 317 1 383 211 51 51 chrX 65937362 65937472 -96662458 - L1ME4a LINE L1 -216 5905 5792 2044 73 0 48 chrX 65937473 65937746 -96662184 - AluSq SINE Alu -15 298 39 1023 123 65 0 chrX 65937756 65937911 -96662019 - FAM SINE Alu 0 49 1 307 194 101 70 chrX 65937956 65938085 -96661845 - L1M4c LINE L1 -5076 1308 1176 2665 55 3 0 chrX 65938095 65938405 -96661525 - AluY SINE Alu 0 311 1 300 111 0 0 chrX 65938410 65938455 -96661475 + (TCCCC)n Simple_repeat Simple_repeat 4 48 0 186 43 0 0 chrX 65938455 65938478 -96661452 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2109 121 0 0 chrX 65938479 65938759 -96661171 - AluSx SINE Alu -32 280 1 270 191 103 15 chrX 65938790 65938852 -96661078 + L2 LINE L2 3193 3261 -6 243 61 0 0 chrX 65938852 65938885 -96661045 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2273 113 0 10 chrX 65939307 65939617 -96660313 - AluSc SINE Alu -2 307 1 2248 128 0 0 chrX 65939650 65939997 -96659933 + AluSx SINE Alu 1 347 0 2388 99 10 0 chrX 65940006 65940310 -96659620 + AluSp SINE Alu 1 307 -6 254 233 11 122 chrX 65940531 65940621 -96659309 - L2 LINE L2 -5 3267 3188 430 361 35 27 chrX 65940799 65941322 -96658608 - L2 LINE L2 -202 3070 2544 2421 87 0 0 chrX 65941400 65941699 -96658231 - AluSx SINE Alu -13 299 1 186 295 205 0 chrX 65941699 65941777 -96658153 + MIR SINE MIR 48 141 -67 2427 106 0 0 chrX 65941786 65942098 -96657832 + AluSq SINE Alu 1 312 -1 239 343 83 31 chrX 65942223 65942512 -96657418 - L2 LINE L2 -870 2444 2141 503 219 34 17 chrX 65942552 65942671 -96657259 + MIR3 SINE MIR 76 196 -12 213 241 112 60 chrX 65942706 65942822 -96657108 - L2 LINE L2 -1291 2023 1902 2365 88 3 0 chrX 65942921 65943216 -96656714 + AluSp SINE Alu 1 296 -17 214 328 15 0 chrX 65943290 65943357 -96656573 + L2 LINE L2 2244 2311 -1003 43 35 0 0 chrX 65943409 65943466 -96656464 + AT_rich Low_complexity Low_complexity 1 57 0 730 255 91 33 chrX 65943494 65943637 -96656293 - MIR SINE MIR -1 261 97 2030 152 0 3 chrX 65943637 65943934 -96655996 - AluJb SINE Alu -16 296 1 730 255 91 33 chrX 65943934 65944033 -96655897 - MIR SINE MIR -165 97 5 189 408 0 0 chrX 65944146 65944222 -96655708 + L2 LINE L2 2586 2661 -653 404 274 96 30 chrX 65944340 65944537 -96655393 + L2 LINE L2 2855 3064 -208 234 91 0 0 chrX 65944636 65944669 -96655261 + (T)n Simple_repeat Simple_repeat 1 33 0 577 142 10 17 chrX 65944682 65944793 -96655137 + LTR49-int LTR ERV1 3814 3910 -1026 496 101 29 0 chrX 65944848 65944917 -96655013 + AluJ/FLAM SINE Alu 5 75 -237 751 164 53 20 chrX 65944925 65945077 -96654853 + LTR49-int LTR ERV1 5229 5385 -946 2340 85 0 0 chrX 65945077 65945402 -96654528 + AluSc SINE Alu 1 325 0 1997 164 0 3 chrX 65945419 65945730 -96654200 + AluJb SINE Alu 1 310 -2 2287 97 0 31 chrX 65945732 65946051 -96653879 + AluSc SINE Alu 1 309 0 2203 112 7 0 chrX 65946060 65946356 -96653574 + AluSx SINE Alu 1 298 -14 2536 78 0 3 chrX 65946358 65946666 -96653264 + AluY SINE Alu 3 309 -2 518 168 0 9 chrX 65946826 65946933 -96652997 - MER113 DNA MER1_type? -415 106 1 932 117 0 0 chrX 65947326 65947470 -96652460 - AluSg/x SINE Alu 0 308 165 31 26 0 0 chrX 65947506 65947544 -96652386 + AT_rich Low_complexity Low_complexity 1 38 0 2081 127 0 7 chrX 65947544 65947879 -96652051 + AluSg SINE Alu 1 310 0 1028 146 7 0 chrX 65947888 65948039 -96651891 + FRAM SINE Alu 23 174 -2 664 131 0 103 chrX 65948069 65948214 -96651716 - MER31B LTR ERV1 -80 386 257 2081 107 0 7 chrX 65948245 65948525 -96651405 + AluSg SINE Alu 1 278 -32 432 0 0 0 chrX 65948530 65948578 -96651352 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 2215 106 0 0 chrX 65948583 65948896 -96651034 + AluSg SINE Alu 1 313 0 1201 127 0 22 chrX 65948897 65949103 -96650827 + AluSg/x SINE Alu 126 312 0 783 158 68 45 chrX 65949103 65949280 -96650650 - MER31B LTR ERV1 -285 181 1 1499 163 68 33 chrX 65949281 65949618 -96650312 - MER31B-int LTR ERV1 -21 4915 4567 356 191 0 56 chrX 65949693 65949782 -96650148 - MER31B-int LTR ERV1 -371 4565 4482 526 200 0 0 chrX 65949853 65949953 -96649977 - MER31B-int LTR ERV1 -467 4469 4370 333 198 115 31 chrX 65950054 65950150 -96649780 - LTR37A LTR ERV1 -322 104 1 2258 114 0 7 chrX 65950222 65950521 -96649409 + AluSx SINE Alu 1 297 -15 2493 65 0 31 chrX 65950523 65950844 -96649086 + AluY SINE Alu 1 311 0 1290 154 8 138 chrX 65950856 65950875 -96649055 - MER31B-int LTR ERV1 -704 4232 4212 2372 93 3 13 chrX 65950875 65951185 -96648745 - AluSp SINE Alu -6 307 1 1290 154 8 138 chrX 65951185 65951243 -96648687 - MER31B-int LTR ERV1 -724 4212 4148 2044 128 3 3 chrX 65951243 65951563 -96648367 + AluSx SINE Alu 3 322 0 1290 154 8 138 chrX 65951563 65951670 -96648260 - MER31B-int LTR ERV1 -788 4148 4115 1935 178 0 3 chrX 65951670 65951979 -96647951 - AluJb SINE Alu -4 308 1 1290 154 8 138 chrX 65951979 65952160 -96647770 - MER31B-int LTR ERV1 -821 4115 3912 501 33 16 0 chrX 65952165 65952226 -96647704 - AluY SINE Alu -254 64 3 2412 188 57 66 chrX 65952275 65952604 -96647326 - MER31B-int LTR ERV1 -1026 3910 3579 2138 113 3 3 chrX 65952604 65952929 -96647001 + AluSx SINE Alu 1 325 0 2496 70 0 3 chrX 65952929 65953231 -96646699 + AluY SINE Alu 1 301 -10 2412 188 57 66 chrX 65953231 65953532 -96646398 - MER31B-int LTR ERV1 -1355 3581 3284 358 175 158 42 chrX 65953571 65953691 -96646239 - MER63 DNA MER1_type -302 760 1 478 320 131 66 chrX 65953691 65953951 -96645979 + L2 LINE L2 2326 2568 -704 2492 75 0 0 chrX 65953951 65954245 -96645685 - AluSc SINE Alu -15 294 1 478 320 131 66 chrX 65954245 65954619 -96645311 + L2 LINE L2 2568 2916 -356 2429 60 0 60 chrX 65954619 65954950 -96644980 - AluY SINE Alu 0 311 1 478 320 131 66 chrX 65954950 65955001 -96644929 + L2 LINE L2 2916 2962 -310 2290 102 0 0 chrX 65955001 65955294 -96644636 + AluSx SINE Alu 1 293 -19 478 320 131 66 chrX 65955294 65955504 -96644426 + L2 LINE L2 2962 3272 0 861 284 39 20 chrX 65955993 65956247 -96643683 + MIR SINE MIR 4 262 0 2088 113 51 7 chrX 65956694 65956986 -96642944 - AluSg SINE Alu -5 305 1 596 77 0 0 chrX 65959120 65959198 -96640732 - MADE1 DNA Mariner 0 80 3 2314 99 0 7 chrX 65959321 65959623 -96640307 - AluSq SINE Alu -13 300 1 1825 108 19 98 chrX 65959639 65959993 -96639937 - AluSx SINE Alu 0 330 1 2248 115 0 6 chrX 65960579 65960893 -96639037 - AluSx SINE Alu 0 312 1 2459 80 3 0 chrX 65961815 65962116 -96637814 - AluSq SINE Alu -11 302 1 329 299 105 88 chrX 65962466 65962760 -96637170 + L2 LINE L2 2951 3249 -23 789 268 64 17 chrX 65962766 65963001 -96636929 - MIR SINE MIR 0 262 17 1400 276 184 90 chrX 65963207 65963851 -96636079 + L3 LINE CR1 468 1050 -527 816 142 0 0 chrX 65963851 65963971 -96635959 + FLAM_C SINE Alu 5 124 -9 1400 276 184 90 chrX 65963971 65963988 -96635942 + L3 LINE CR1 1050 1064 -513 2214 118 0 16 chrX 65963988 65964301 -96635629 + AluSc SINE Alu 1 308 -1 1400 276 184 90 chrX 65964301 65964628 -96635302 + L3 LINE CR1 1064 1550 -27 1991 155 6 19 chrX 65964632 65964948 -96634982 - AluJb SINE Alu 0 312 1 496 290 131 22 chrX 65965145 65965328 -96634602 - L3 LINE CR1 -3 1574 1372 1313 301 366 9 chrX 65965490 65966460 -96633470 - L3 LINE CR1 -200 1377 62 723 72 0 31 chrX 65967666 65967763 -96632167 + FLAM SINE Alu 39 132 -11 351 65 0 0 chrX 65968083 65968129 -96631801 + (CA)n Simple_repeat Simple_repeat 1 46 0 225 318 47 28 chrX 65968156 65968250 -96631680 - L3 LINE CR1 -437 1140 1045 355 260 133 35 chrX 65968250 65968423 -96631507 + MIR3 SINE MIR 3 192 -16 281 342 107 25 chrX 65968746 65968942 -96630988 - L3 LINE CR1 -804 773 562 231 88 0 0 chrX 65969178 65969212 -96630718 + (GGA)n Simple_repeat Simple_repeat 2 35 0 387 171 0 0 chrX 65970514 65970590 -96629340 + (TG)n Simple_repeat Simple_repeat 2 77 0 2061 100 35 3 chrX 65971835 65972292 -96627638 - AluSx SINE Alu 0 466 1 264 59 0 0 chrX 65972363 65972397 -96627533 + (TG)n Simple_repeat Simple_repeat 2 35 0 1804 164 11 0 chrX 65972397 65972678 -96627252 - AluJb SINE Alu -28 284 1 2462 76 3 0 chrX 65974264 65974565 -96625365 - AluSq SINE Alu -10 303 2 1971 118 0 51 chrX 65974907 65975220 -96624710 + AluJb SINE Alu 1 297 -15 791 222 101 5 chrX 65976962 65977160 -96622770 + MIR SINE MIR 30 246 -16 654 175 8 32 chrX 65977314 65977440 -96622490 + MER5A DNA MER1_type 67 189 0 1732 176 10 29 chrX 65978311 65978624 -96621306 + AluJo SINE Alu 1 307 -5 1879 116 0 0 chrX 65978939 65979190 -96620740 - AluSq SINE Alu -3 310 60 2548 74 3 0 chrX 65979327 65979639 -96620291 + AluSp SINE Alu 1 313 0 2569 80 0 0 chrX 65980224 65980535 -96619395 + AluSx SINE Alu 1 311 -1 2154 98 3 38 chrX 65980706 65981024 -96618906 + AluSx SINE Alu 2 308 -4 2293 115 16 0 chrX 65981392 65981697 -96618233 - AluSx SINE Alu -2 310 1 286 250 25 38 chrX 65981754 65981834 -96618096 + Charlie4 DNA MER1_type 1883 1961 0 335 266 26 9 chrX 65982007 65982120 -96617810 + CT-rich Low_complexity Low_complexity 2 116 0 1551 96 45 9 chrX 66182312 66182532 -96417398 - MER30 DNA MER1_type -2 228 1 1705 118 85 26 chrX 66182886 66183156 -96416774 + AluSg SINE Alu 20 305 -5 317 221 15 0 chrX 66183615 66183683 -96416247 - L2 LINE L2 0 3272 3204 1920 149 7 17 chrX 66183722 66184024 -96415906 + AluJo SINE Alu 1 299 -13 2464 79 0 3 chrX 66184560 66184863 -96415067 - AluSq SINE Alu -10 303 2 846 143 0 15 chrX 66184896 66185029 -96414901 - FLAM_C SINE Alu 0 133 3 393 78 31 0 chrX 66185156 66185220 -96414710 - L1MD2 LINE L1 -2 6357 6292 1210 152 0 0 chrX 66185222 66185400 -96414530 + FRAM SINE Alu 1 176 0 2512 155 7 20 chrX 66185406 66185772 -96414158 - L1MD3 LINE L1 -74 7921 7552 1379 121 84 0 chrX 66185772 66185987 -96413943 + MER46A DNA MER2_type 4 236 0 2512 155 7 20 chrX 66185987 66186064 -96413866 - L1MD3 LINE L1 -443 7552 5725 689 220 18 0 chrX 66186505 66186700 -96413230 + L1MA4 LINE L1 6129 6326 0 2330 94 0 3 chrX 66186875 66187174 -96412756 + AluSx SINE Alu 1 298 -14 534 225 50 93 chrX 66187348 66187474 -96412456 + MER5B DNA MER1_type 4 121 -57 2317 110 0 0 chrX 66187474 66187775 -96412155 + AluSx SINE Alu 1 301 -11 534 225 50 93 chrX 66187775 66187830 -96412100 + MER5B DNA MER1_type 121 177 -1 2330 91 0 3 chrX 66188149 66188456 -96411474 - AluSq SINE Alu -5 308 3 1920 133 0 48 chrX 66188787 66189103 -96410827 - AluJo SINE Alu -11 301 1 5707 98 40 28 chrX 66189521 66189793 -96410137 + Tigger3b DNA MER2_type 325 592 -2436 2176 134 0 10 chrX 66189793 66190099 -96409831 + AluSx SINE Alu 1 303 -9 5707 98 40 28 chrX 66190099 66190323 -96409607 + Tigger3b DNA MER2_type 592 812 -2216 2289 92 3 31 chrX 66190323 66190458 -96409472 + AluSp SINE Alu 1 138 -175 2313 96 7 0 chrX 66190458 66190751 -96409179 + AluSx SINE Alu 1 295 -17 2289 92 3 31 chrX 66190751 66190932 -96408998 + AluSp SINE Alu 138 308 -5 5707 98 40 28 chrX 66190932 66191329 -96408601 + Tigger3b DNA MER2_type 812 1230 -1 2081 111 10 7 chrX 66191565 66191863 -96408067 + AluSx SINE Alu 1 299 -13 216 225 133 113 chrX 66191932 66192042 -96407888 - MIR SINE MIR -62 200 84 2207 103 0 0 chrX 66192042 66192344 -96407586 + AluSx SINE Alu 1 302 0 216 225 133 113 chrX 66192344 66192383 -96407547 - MIR SINE MIR -178 84 47 2316 99 0 0 chrX 66192459 66192753 -96407177 + AluSg SINE Alu 1 294 -16 21 0 0 0 chrX 66194442 66194463 -96405467 + AT_rich Low_complexity Low_complexity 1 21 0 1022 140 0 0 chrX 66194773 66194916 -96405014 + 7SLRNA srpRNA srpRNA 1 143 -177 1305 176 6 121 chrX 66194918 66195265 -96404665 + 7SLRNA srpRNA srpRNA 2 308 -12 533 157 116 58 chrX 66195296 66195417 -96404513 - FLAM_A SINE Alu -5 128 1 2031 137 0 11 chrX 66195458 66195772 -96404158 + AluSx SINE Alu 1 311 0 2128 119 17 0 chrX 66196089 66196382 -96403548 + AluSq SINE Alu 1 298 -15 1040 218 149 41 chrX 66196493 66196883 -96403047 + L1MC4a LINE L1 5394 5825 -1983 1559 194 101 52 chrX 66197039 66197123 -96402807 - Charlie4a DNA MER1_type -1453 508 430 1870 134 10 20 chrX 66197123 66197421 -96402509 + AluJb SINE Alu 1 295 -17 1559 194 101 52 chrX 66197421 66197511 -96402419 - Charlie4a DNA MER1_type -1531 430 346 1807 131 0 67 chrX 66197511 66197824 -96402106 + AluSx SINE Alu 1 292 -20 1559 194 101 52 chrX 66197824 66198007 -96401923 - Charlie4a DNA MER1_type -1615 346 174 2112 110 125 3 chrX 66198007 66198343 -96401587 - MER51B LTR ERV1 0 377 1 1559 194 101 52 chrX 66198343 66198467 -96401463 - Charlie4a DNA MER1_type -1787 174 1 315 230 27 0 chrX 66198675 66198749 -96401181 + Charlie7 DNA MER1_type 2055 2130 -482 413 206 255 20 chrX 66198809 66199052 -96400878 + Charlie7 DNA MER1_type 2245 2545 -67 2923 203 80 32 chrX 66199052 66199827 -96400103 + MER21B LTR ERV1 1 812 -51 226 270 101 44 chrX 66199887 66200046 -96399884 + MIR SINE MIR 77 244 -18 1257 126 93 0 chrX 66200315 66200530 -96399400 - Tigger4(Zombi) DNA MER2_type -3 2728 2494 * 1472 162 75 8 chrX 66200526 66200779 -96399151 - Tigger4(Zombi) DNA MER2_type -2461 270 1 1245 241 146 66 chrX 66205254 66206013 -96393917 + L2 LINE L2 1933 2752 -562 1207 167 113 8 chrX 66206013 66206270 -96393660 + L1M4 LINE L1 4843 5126 -1020 786 130 15 30 chrX 66206288 66206462 -96393468 + FLAM_C SINE Alu 1 133 0 923 165 116 19 chrX 66206462 66206701 -96393229 + L1P4 LINE L1 5361 5619 -546 370 215 0 38 chrX 66207708 66207787 -96392143 - THE1C LTR MaLR -275 100 25 * 396 104 0 60 chrX 66207782 66207849 -96392081 - THE1C LTR MaLR -312 63 1 1029 125 6 25 chrX 66207849 66208009 -96391921 + AluJb SINE Alu 147 303 -9 2052 102 25 7 chrX 66208198 66208501 -96391429 + AluSx SINE Alu 1 308 0 1803 130 10 27 chrX 66208864 66209164 -96390766 + AluJb SINE Alu 1 295 -17 5465 98 30 8 chrX 66209367 66210130 -96389800 + LTR17 LTR ERV1 1 780 0 1856 166 106 29 chrX 66210592 66210623 -96389307 + L1ME2 LINE L1 5707 5734 -430 2087 103 3 0 chrX 66210623 66210905 -96389025 + AluSx SINE Alu 27 309 -3 2058 138 0 0 chrX 66210910 66211217 -96388713 + AluSx SINE Alu 1 307 0 1856 166 106 29 chrX 66211217 66211594 -96388336 + L1ME2 LINE L1 5737 6154 -10 314 237 26 99 chrX 66211635 66211787 -96388143 + L1MC4 LINE L1 7830 7970 -72 567 312 17 34 chrX 66211869 66212161 -96387769 + L2 LINE L2 1836 2122 -1192 1583 199 89 6 chrX 66212247 66212626 -96387304 + MLT1C LTR MaLR 6 324 -50 1397 146 112 0 chrX 66212631 66212891 -96387039 - L1MB4 LINE L1 -8 6172 5884 201 162 0 0 chrX 66213920 66213957 -96385973 + A-rich Low_complexity Low_complexity 1 37 0 1442 196 16 121 chrX 66214040 66214194 -96385736 - L1 LINE L1 -1323 4823 4654 2568 61 0 0 chrX 66214194 66214491 -96385439 + AluY SINE Alu 1 297 -14 637 193 26 0 chrX 66214498 66214612 -96385318 - FLAM_A SINE Alu -16 117 1 1442 196 16 121 chrX 66214612 66214691 -96385239 - L1 LINE L1 -1498 4648 4562 1587 115 0 9 chrX 66214691 66214917 -96385013 - AluSg/x SINE Alu -5 305 82 1442 196 16 121 chrX 66214917 66215179 -96384751 - L1 LINE L1 -1584 4562 4372 2160 122 0 0 chrX 66215179 66215474 -96384456 + AluSx SINE Alu 1 295 -17 2252 85 21 0 chrX 66215477 66215759 -96384171 + AluSx SINE Alu 1 288 -24 2233 103 7 7 chrX 66215771 66216072 -96383858 + AluSx SINE Alu 1 301 -11 1180 190 5 38 chrX 66216092 66216381 -96383549 - L1 LINE L1 -2024 4122 3846 260 239 60 0 chrX 66216383 66216450 -96383480 - L2 LINE L2 -1000 2314 2244 545 127 9 0 chrX 66216450 66216549 -96383381 + L1MA7 LINE L1 5386 5492 -799 262 59 0 0 chrX 66216553 66216587 -96383343 + LTR19A LTR ERV1 1 34 -452 2629 130 30 57 chrX 66216596 66217089 -96382841 + LTR19A LTR ERV1 7 486 0 56225 70 7 15 chrX 66217089 66218801 -96381129 + HERVFH19I LTR ERV1 1 1725 -5994 2573 70 0 0 chrX 66218801 66219101 -96380829 - AluSg SINE Alu -10 300 1 56225 70 7 15 chrX 66219101 66219260 -96380670 + HERVFH19I LTR ERV1 1725 1884 -5835 2399 70 7 17 chrX 66219260 66219562 -96380368 + AluSq SINE Alu 1 299 -14 56225 70 7 15 chrX 66219562 66219610 -96380320 + HERVFH19I LTR ERV1 1884 1931 -5788 2088 74 12 0 chrX 66219610 66219866 -96380064 - AluSp SINE Alu -26 287 29 56225 70 7 15 chrX 66219866 66220682 -96379248 + HERVFH19I LTR ERV1 1931 2752 -4967 2218 103 7 0 chrX 66220682 66220974 -96378956 + AluSp SINE Alu 13 306 -7 56225 70 7 15 chrX 66220974 66223951 -96375979 + HERVFH19I LTR ERV1 2752 5649 -2070 5107 34 3 0 chrX 66223951 66224540 -96375390 + LTR10C LTR ERV1 1 591 0 56225 70 7 15 chrX 66224540 66226114 -96373816 + HERVFH19I LTR ERV1 5649 7234 -485 2236 70 60 0 chrX 66226116 66226400 -96373530 + AluY SINE Alu 1 301 -10 423 57 0 0 chrX 66226402 66226455 -96373475 - LTR10D LTR ERV1 -460 53 1 1959 152 23 6 chrX 66226467 66226810 -96373120 + LTR19A LTR ERV1 138 486 0 3530 130 31 55 chrX 66226810 66226886 -96373044 + L1MA7 LINE L1 5495 5571 -720 1908 152 0 7 chrX 66226886 66227182 -96372748 + AluJb SINE Alu 1 294 -18 3530 130 31 55 chrX 66227182 66227759 -96372171 + L1MA7 LINE L1 5571 6132 -159 1399 142 0 9 chrX 66227763 66227974 -96371956 - AluSg/x SINE Alu -18 292 84 1057 113 25 0 chrX 66227975 66228135 -96371795 + L1MA7 LINE L1 6128 6291 0 904 175 7 7 chrX 66228149 66228303 -96371627 + FRAM SINE Alu 12 165 -11 268 89 67 0 chrX 66228303 66228348 -96371582 + L1MA5 LINE L1 6252 6299 -1 22 0 0 0 chrX 66228357 66228379 -96371551 + AT_rich Low_complexity Low_complexity 1 22 0 262 284 15 37 chrX 66228403 66228508 -96371422 - L2 LINE L2 -1073 2241 2138 934 107 8 0 chrX 66228508 66228639 -96371291 + FLAM_C SINE Alu 2 133 0 262 284 15 37 chrX 66228639 66228667 -96371263 - L2 LINE L2 -1176 2138 2111 2269 102 0 3 chrX 66228732 66229027 -96370903 + AluSq SINE Alu 1 294 -19 678 83 0 21 chrX 66229060 66229156 -96370774 + FLAM_C SINE Alu 35 128 -15 472 289 97 54 chrX 66229157 66229647 -96370283 + L1MC4 LINE L1 7196 7663 -379 2211 103 10 3 chrX 66229647 66229939 -96369991 + AluSx SINE Alu 1 294 -18 472 289 97 54 chrX 66229939 66230038 -96369892 + L1MC4 LINE L1 7663 7756 -286 2236 96 17 0 chrX 66230038 66230330 -96369600 + AluSx SINE Alu 1 297 -15 472 289 97 54 chrX 66230330 66230386 -96369544 + L1MC4 LINE L1 7756 7870 -172 3166 247 145 21 chrX 66230404 66231263 -96368667 - L2 LINE L2 -1208 2106 1075 1755 181 62 82 chrX 66231263 66231595 -96368335 - MLT1D LTR MaLR 0 505 185 2252 109 10 0 chrX 66231595 66231898 -96368032 - AluSq SINE Alu -7 306 1 1755 181 62 82 chrX 66231898 66232080 -96367850 - MLT1D LTR MaLR -320 185 1 3166 247 145 21 chrX 66232080 66232337 -96367593 - L2 LINE L2 -2239 1075 851 850 158 0 76 chrX 66232378 66232503 -96367427 + AluJo/FLAM SINE Alu 2 77 -235 2139 101 10 0 chrX 66232503 66232799 -96367131 - AluSg SINE Alu -11 299 1 850 158 0 76 chrX 66232799 66232844 -96367086 + AluJo/FLAM SINE Alu 77 124 -188 1247 175 19 0 chrX 66232864 66233070 -96366860 + MER6B DNA MER2_type 1 210 0 330 317 197 10 chrX 66233209 66233417 -96366513 + L1MB2 LINE L1 5501 5747 -374 1687 128 7 37 chrX 66233420 66233557 -96366373 + AluJo SINE Alu 1 141 -171 2109 49 8 0 chrX 66233557 66233821 -96366109 + AluY SINE Alu 36 301 -10 1687 128 7 37 chrX 66233821 66233980 -96365950 + AluJo SINE Alu 141 288 -24 1074 131 6 0 chrX 66234001 66234169 -96365761 + AluJo SINE Alu 122 290 -22 1168 112 53 34 chrX 66234170 66234376 -96365554 + L1MB2 LINE L1 5935 6144 -27 226 149 0 0 chrX 66234398 66234445 -96365485 + L1MB3 LINE L1 6137 6183 0 280 317 118 37 chrX 66234503 66234749 -96365181 + L2 LINE L2 2994 3259 -54 2256 88 0 3 chrX 66235694 66236001 -96363929 + AluSx SINE Alu 1 306 -6 1242 171 52 87 chrX 66236001 66236310 -96363620 + AluJb SINE Alu 1 298 -4 2027 80 35 14 chrX 66236729 66237018 -96362912 + AluSx SINE Alu 1 295 -17 480 280 33 13 chrX 66237108 66237258 -96362672 - MIR SINE MIR -108 154 2 1098 175 41 161 chrX 66237387 66237747 -96362183 + MLT1A1 LTR MaLR 1 308 -57 2141 69 28 3 chrX 66237747 66238035 -96361895 + AluSp SINE Alu 1 295 -18 1098 175 41 161 chrX 66238035 66238085 -96361845 + MLT1A1 LTR MaLR 308 362 -3 2147 82 4 0 chrX 66238939 66239243 -96360687 + AluSg SINE Alu 1 305 0 1851 116 70 0 chrX 66239255 66239539 -96360391 + AluSq SINE Alu 1 304 -9 783 218 49 53 chrX 66239548 66239833 -96360097 + L1MC5 LINE L1 7649 7932 -29 1134 235 20 16 chrX 66239954 66240209 -96359721 - MIR SINE MIR 0 262 7 1055 290 21 90 chrX 66240266 66240700 -96359230 - L2 LINE L2 0 3272 2869 341 312 94 35 chrX 66240699 66240869 -96359061 - MIR3 SINE MIR -9 199 20 * 1831 136 36 0 chrX 66241004 66241305 -96358625 + AluJb SINE Alu 1 312 0 1642 147 0 62 chrX 66241369 66241675 -96358255 - AluJo SINE Alu -25 287 1 1704 295 77 44 chrX 66242209 66243203 -96356727 + L2 LINE L2 2231 3259 -13 234 0 0 0 chrX 66243203 66243229 -96356701 + (TGGA)n Simple_repeat Simple_repeat 1 26 0 267 290 0 0 chrX 66244274 66244343 -96355587 - MIR SINE MIR -127 135 67 405 0 0 0 chrX 66244497 66244542 -96355388 + (A)n Simple_repeat Simple_repeat 1 45 0 2262 103 3 0 chrX 66244801 66245112 -96354818 + AluSx SINE Alu 1 312 0 3779 194 79 2 chrX 66245253 66246120 -96353810 + L1ME2 LINE L1 5224 6162 -2 592 217 35 0 chrX 66246123 66246238 -96353692 + MER5B DNA MER1_type 60 178 0 371 147 0 0 chrX 66246423 66246498 -96353432 + L1MB4 LINE L1 6100 6174 -6 854 163 0 0 chrX 66246521 66246650 -96353280 + FLAM_A SINE Alu 1 129 -4 414 193 138 0 chrX 66246656 66246765 -96353165 - L1MC4a LINE L1 -1976 5832 5709 842 164 7 0 chrX 66246772 66246912 -96353018 + FLAM_C SINE Alu 1 141 -2 2154 93 7 3 chrX 66246942 66247244 -96352686 - AluSx SINE Alu -9 303 1 2395 43 0 20 chrX 66247280 66247580 -96352350 + AluY SINE Alu 1 294 -17 966 255 33 0 chrX 66247584 66247827 -96352103 - L1MC4a LINE L1 -2144 5664 5414 868 139 40 155 chrX 66247914 66247976 -96351954 - MLT1A1 LTR MaLR 0 365 297 844 166 0 83 chrX 66247976 66248157 -96351773 + FRAM SINE Alu 1 166 0 868 139 40 155 chrX 66248157 66248345 -96351585 - MLT1A1 LTR MaLR -68 297 144 655 134 0 10 chrX 66248360 66248457 -96351473 - AluJ SINE Alu -19 293 198 471 152 10 61 chrX 66248451 66248550 -96351380 - AluJ SINE Alu -165 147 54 * 2279 88 0 19 chrX 66248586 66248894 -96351036 - AluSx SINE Alu -10 302 1 782 155 16 15 chrX 66248899 66249053 -96350877 - MLT1A1 LTR MaLR -209 165 1 1400 245 153 63 chrX 66249131 66249548 -96350382 + L2 LINE L2 2221 2599 -714 2314 88 3 0 chrX 66249548 66249854 -96350076 + AluSx SINE Alu 1 307 -5 1657 184 23 0 chrX 66249859 66249978 -96349952 + AluJb SINE Alu 2 117 -195 240 59 0 0 chrX 66249978 66250012 -96349918 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1657 184 23 0 chrX 66250012 66250196 -96349734 + AluJb SINE Alu 117 312 0 1400 245 153 63 chrX 66250196 66250762 -96349168 + L2 LINE L2 2602 3313 0 703 75 0 0 chrX 66251381 66251474 -96348456 + FRAM SINE Alu 54 146 -30 387 41 0 0 chrX 66251474 66251523 -96348407 + (TAA)n Simple_repeat Simple_repeat 1 49 0 193 321 83 0 chrX 66251572 66251656 -96348274 - MIR SINE MIR -65 197 107 270 244 146 57 chrX 66252153 66252276 -96347654 - L2 LINE L2 -5 3267 3134 524 234 55 16 chrX 66252287 66252415 -96347515 - L2 LINE L2 -4 3309 3177 1282 184 102 50 chrX 66252440 66252862 -96347068 - MLT2B1 LTR ERVL -2 462 1 1617 214 77 82 chrX 66252873 66253243 -96346687 - L2 LINE L2 -188 3125 2763 2169 84 0 3 chrX 66253243 66253553 -96346377 + AluY SINE Alu 1 309 0 1617 214 77 82 chrX 66253553 66253866 -96346064 - L2 LINE L2 -550 2763 2450 525 202 121 51 chrX 66253885 66254102 -96345828 + MIR SINE MIR 3 241 -21 563 286 25 0 chrX 66254836 66254997 -96344933 + MIR SINE MIR 28 192 -70 21 0 0 0 chrX 66255154 66255175 -96344755 + AT_rich Low_complexity Low_complexity 1 21 0 710 193 83 102 chrX 66255397 66255420 -96344510 - MIR SINE MIR -2 260 238 2307 86 0 3 chrX 66255420 66255724 -96344206 - AluSq SINE Alu -10 303 1 710 193 83 102 chrX 66255724 66255929 -96344001 - MIR SINE MIR -24 238 35 2145 105 0 25 chrX 66255929 66256243 -96343687 - AluSx SINE Alu -6 306 1 710 193 83 102 chrX 66256243 66256278 -96343652 - MIR SINE MIR -227 35 1 208 302 19 0 chrX 66256484 66256537 -96343393 + MIR3 SINE MIR 131 184 -24 792 331 69 46 chrX 66256603 66257220 -96342710 + L2 LINE L2 2080 2716 -598 2265 75 13 3 chrX 66257220 66257526 -96342404 + AluSx SINE Alu 1 309 -3 792 331 69 46 chrX 66257526 66257602 -96342328 + L2 LINE L2 2716 2789 -525 464 323 42 32 chrX 66257642 66257859 -96342071 + MIR SINE MIR 23 241 -21 246 283 101 109 chrX 66258012 66258478 -96341452 + L2 LINE L2 2809 3270 -2 183 265 0 0 chrX 66259134 66259183 -96340747 - L2 LINE L2 -342 2930 2882 500 311 63 89 chrX 66259239 66259622 -96340308 - L2 LINE L2 -18 3254 2882 198 379 0 0 chrX 66259627 66259714 -96340216 - L2 LINE L2 -996 2318 2232 2018 138 62 44 chrX 66260027 66260134 -96339796 - MER63C DNA MER1_type -139 922 818 675 206 0 22 chrX 66260134 66260249 -96339681 + FLAM_A SINE Alu 1 117 -185 1564 149 0 92 chrX 66260249 66260420 -96339510 - AluJo SINE Alu -8 304 119 2429 55 0 0 chrX 66260420 66260713 -96339217 - AluY SINE Alu -17 294 2 1564 149 0 92 chrX 66260713 66260741 -96339189 - AluJo SINE Alu -193 119 90 1410 148 85 53 chrX 66260741 66261024 -96338906 + AluJb SINE Alu 1 292 -20 1564 149 0 92 chrX 66261024 66261158 -96338772 - AluJo SINE Alu -222 90 1 675 206 0 22 chrX 66261158 66261178 -96338752 + FLAM_A SINE Alu 117 133 -169 2018 138 62 44 chrX 66261178 66261196 -96338734 - MER63C DNA MER1_type -243 818 802 2566 35 0 10 chrX 66261196 66261510 -96338420 + AluY SINE Alu 1 311 0 2018 138 62 44 chrX 66261510 66261911 -96338019 - MER63C DNA MER1_type -259 802 426 656 198 130 37 chrX 66261914 66262076 -96337854 + FAM SINE Alu 1 41 -8 1650 151 7 34 chrX 66262076 66262367 -96337563 - MER63C DNA MER1_type -505 425 143 2006 114 21 0 chrX 66262383 66262673 -96337257 - AluSx SINE Alu -16 296 1 301 75 0 0 chrX 66262931 66262971 -96336959 - MER4E LTR ERV1 -74 692 653 1989 118 14 0 chrX 66262983 66263270 -96336660 - AluSg SINE Alu -19 291 1 1845 109 18 0 chrX 66263299 66263583 -96336347 + AluSq SINE Alu 1 289 -24 1567 156 7 17 chrX 66263583 66263872 -96336058 - AluJo SINE Alu -26 286 1 493 249 11 34 chrX 66263872 66264049 -96335881 + L1MC4 LINE L1 7870 8042 0 1129 218 106 42 chrX 66264063 66264440 -96335490 - L2 LINE L2 -370 2944 2544 339 202 91 20 chrX 66264487 66264586 -96335344 - L1MC5 LINE L1 -34 7927 7822 1538 171 27 17 chrX 66264586 66264878 -96335052 - AluJo SINE Alu -15 297 3 353 235 106 15 chrX 66264880 66265012 -96334918 - L1MC5 LINE L1 -188 7773 7630 405 216 224 8 chrX 66265012 66265146 -96334784 - L2 LINE L2 -767 2547 2385 193 194 0 0 chrX 66265407 66265438 -96334492 + MIR3 SINE MIR 157 187 -21 2026 119 7 0 chrX 66265611 66265913 -96334017 + AluSp SINE Alu 1 304 -9 1555 151 55 7 chrX 66265980 66266275 -96333655 + AluJb SINE Alu 1 308 0 1399 201 44 0 chrX 66266612 66266886 -96333044 - AluJb SINE Alu -26 286 1 1749 160 16 22 chrX 66267071 66267383 -96332547 + AluJo SINE Alu 3 312 0 937 231 62 10 chrX 66267816 66268024 -96331906 + MER20 DNA MER1_type 1 219 0 291 171 80 45 chrX 66269757 66269845 -96330085 + AluJo SINE Alu 76 135 -167 398 230 40 20 chrX 66273643 66273743 -96326187 - L2 LINE L2 -17 3255 3154 2193 30 0 19 chrX 66273777 66274074 -96325856 + AluY SINE Alu 19 310 0 1710 113 40 43 chrX 66274503 66274805 -96325125 - AluJb SINE Alu -11 301 1 217 352 56 32 chrX 66275062 66275187 -96324743 + L2 LINE L2 3144 3271 -1 225 303 73 28 chrX 66275198 66275307 -96324623 - L3 LINE CR1 -57 1520 1407 220 213 0 125 chrX 66275506 66275642 -96324288 - L2 LINE L2 -810 2504 2386 193 216 135 40 chrX 66275696 66275770 -96324160 - MIR SINE MIR -95 113 33 476 274 80 20 chrX 66276038 66276239 -96323691 - L1ME4a LINE L1 -218 5903 5691 404 351 46 0 chrX 66276270 66276401 -96323529 - L2 LINE L2 0 3272 3136 689 318 77 38 chrX 66276492 66277026 -96322904 - L2 LINE L2 -529 2785 2231 2298 81 0 3 chrX 66277253 66277549 -96322381 + AluSx SINE Alu 1 295 -17 234 250 15 15 chrX 66277552 66277620 -96322310 - L1ME4a LINE L1 -756 5408 5341 25 31 0 0 chrX 66277862 66277894 -96322036 + AT_rich Low_complexity Low_complexity 1 32 0 1212 134 0 20 chrX 66278245 66278446 -96321484 + AluJo SINE Alu 1 197 -115 2808 201 26 47 chrX 66278478 66279180 -96320750 - L1ME1 LINE L1 -5 6161 5475 4986 144 31 31 chrX 66279188 66279225 -96320705 - L1MB4 LINE L1 -1 6179 6143 2021 121 0 0 chrX 66279225 66279549 -96320381 + AluSg SINE Alu 1 324 0 4986 144 31 31 chrX 66279549 66280449 -96319481 - L1MB4 LINE L1 -37 6143 5237 2196 91 88 9 chrX 66280449 66280778 -96319152 + THE1A LTR MaLR 1 355 0 4986 144 31 31 chrX 66280778 66280905 -96319025 - L1MB4 LINE L1 -943 5237 5111 1681 200 20 73 chrX 66280915 66281150 -96318780 - L1ME1 LINE L1 -743 5403 5157 768 82 0 0 chrX 66281150 66281248 -96318682 - HY3 scRNA scRNA 0 101 4 1681 200 20 73 chrX 66281248 66281331 -96318599 - L1ME1 LINE L1 -989 5157 5071 2190 108 0 0 chrX 66281331 66281626 -96318304 - AluSx SINE Alu -17 295 1 1681 200 20 73 chrX 66281626 66281932 -96317998 - L1ME1 LINE L1 -1075 5071 4879 456 282 44 86 chrX 66282094 66282348 -96317582 - L1MC4a LINE L1 -1814 5994 5731 1724 104 104 0 chrX 66282348 66282616 -96317314 - AluSx SINE Alu -16 296 1 456 282 44 86 chrX 66282616 66282646 -96317284 - L1MC4a LINE L1 -2077 5731 5701 2435 45 7 3 chrX 66282646 66282954 -96316976 - AluY SINE Alu -2 309 1 456 282 44 86 chrX 66282954 66283054 -96316876 - L1MC4a LINE L1 -2107 5701 5625 780 214 138 25 chrX 66283066 66283262 -96316668 - MIR SINE MIR -11 251 34 510 237 11 83 chrX 66283262 66283301 -96316629 - L1MC4a LINE L1 -527 5637 5597 1960 129 7 0 chrX 66283301 66283595 -96316335 - AluSx SINE Alu -16 296 1 510 237 11 83 chrX 66283595 66283760 -96316170 - L1MC4a LINE L1 -567 5597 5446 268 114 0 0 chrX 66283773 66283808 -96316122 - U2 snRNA snRNA -153 35 1 504 261 108 46 chrX 66283834 66283985 -96315945 + L2 LINE L2 3056 3223 -90 1724 155 38 3 chrX 66283985 66284276 -96315654 + AluJb SINE Alu 1 301 -11 504 261 108 46 chrX 66284276 66284319 -96315611 + L2 LINE L2 3223 3262 -51 576 219 55 31 chrX 66284358 66284486 -96315444 - MIR SINE MIR -119 143 13 2749 80 3 0 chrX 66284497 66284849 -96315081 + THE1A LTR MaLR 1 353 -2 2517 49 0 0 chrX 66284849 66285156 -96314774 + AluY SINE Alu 1 307 -4 3314 164 68 3 chrX 66285177 66285798 -96314132 - L1MD2 LINE L1 -389 6364 5704 1622 134 43 36 chrX 66285798 66286075 -96313855 - AluJo SINE Alu -15 297 19 8419 224 70 43 chrX 66286084 66286868 -96313062 - L1MD2 LINE L1 -1253 5287 4525 186 71 0 0 chrX 66286868 66286896 -96313034 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8419 224 70 43 chrX 66286896 66286963 -96312967 - L1MD2 LINE L1 -2015 4525 4461 2174 125 0 0 chrX 66286963 66287274 -96312656 - AluSx SINE Alu -1 311 1 8419 224 70 43 chrX 66287274 66287286 -96312644 - L1MD2 LINE L1 -2079 4461 4451 2029 96 26 20 chrX 66287286 66287588 -96312342 - AluSx SINE Alu -8 304 1 8419 224 70 43 chrX 66287588 66287744 -96312186 - L1MD2 LINE L1 -2089 4451 4301 1719 153 31 7 chrX 66287744 66288032 -96311898 - AluJo SINE Alu -17 295 1 8419 224 70 43 chrX 66288032 66288813 -96311117 - L1MD2 LINE L1 -2239 4301 3542 748 188 0 0 chrX 66288813 66288946 -96310984 - FLAM_C SINE Alu 0 133 1 8419 224 70 43 chrX 66288946 66289763 -96310167 - L1MD2 LINE L1 -2998 3542 2597 430 194 259 0 chrX 66289767 66289875 -96310055 - FLAM_C SINE Alu -7 136 1 1960 136 0 0 chrX 66289884 66290179 -96309751 - AluSx SINE Alu -17 295 1 2256 79 0 7 chrX 66290209 66290514 -96309416 + AluY SINE Alu 3 305 -6 1210 108 0 0 chrX 66290514 66290680 -96309250 + AluSg/x SINE Alu 134 299 -13 1035 156 66 8 chrX 66290682 66290939 -96308991 - L1MD2 LINE L1 -3946 2594 2323 768 110 37 7 chrX 66291006 66291142 -96308788 - L1MD2 LINE L1 -5098 1445 1306 1067 122 42 32 chrX 66291142 66291331 -96308599 - AluJb SINE Alu -5 307 117 28 48 0 0 chrX 66291430 66291472 -96308458 + AT_rich Low_complexity Low_complexity 1 42 0 347 81 0 20 chrX 66291486 66291544 -96308386 - AluJb SINE Alu -170 132 86 1730 164 154 40 chrX 66291551 66291954 -96307976 - L1MD2 LINE L1 -5253 1290 842 252 200 0 0 chrX 66292266 66292321 -96307609 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 546 276 103 20 chrX 66292321 66292524 -96307406 - L1MD2 LINE L1 -6263 277 58 424 234 0 71 chrX 66292552 66292736 -96307194 - L1MC/D LINE L1 -2373 5435 5265 515 297 144 44 chrX 66292745 66292814 -96307116 - L1MC/D LINE L1 -913 5233 5172 1702 176 3 14 chrX 66292814 66293141 -96306789 - AluJo SINE Alu 0 312 1 515 297 144 44 chrX 66293141 66293391 -96306539 - L1MC/D LINE L1 -974 5172 4882 1193 78 12 0 chrX 66293423 66293590 -96306340 - L1MB2 LINE L1 -2 6169 6001 591 309 108 15 chrX 66293741 66294010 -96305920 + L2 LINE L2 3014 3307 -6 271 293 65 32 chrX 66294286 66294409 -96305521 + L2 LINE L2 3134 3260 -12 2509 168 71 20 chrX 66294858 66295351 -96304579 + MLT2B1 LTR ERVL 3 520 0 414 244 80 102 chrX 66296607 66296832 -96303098 + L2 LINE L2 3037 3256 -16 791 163 0 16 chrX 66300138 66300267 -96299663 + FLAM_A SINE Alu 1 127 -6 202 301 21 0 chrX 66300823 66300916 -96299014 + A-rich Low_complexity Low_complexity 3 97 0 488 167 18 26 chrX 66301990 66302104 -96297826 - MIR SINE MIR -73 135 23 208 147 0 0 chrX 66302157 66302191 -96297739 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chrX 66302507 66302528 -96297402 + (CGGG)n Simple_repeat Simple_repeat 3 23 0 28 48 0 0 chrX 66302635 66302677 -96297253 + GC_rich Low_complexity Low_complexity 1 42 0 200 139 0 23 chrX 66302860 66302903 -96297027 + (CCGCG)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chrX 66304423 66304451 -96295479 + GC_rich Low_complexity Low_complexity 1 28 0 340 298 190 6 chrX 66305774 66305932 -96293998 - MIR SINE MIR -60 202 16 539 318 19 0 chrX 66305969 66306123 -96293807 + MIR SINE MIR 21 177 -85 302 246 154 75 chrX 66306522 66306612 -96293318 + L1ME4a LINE L1 5690 5772 -349 315 0 0 0 chrX 66306612 66306647 -96293283 + (CA)n Simple_repeat Simple_repeat 2 36 0 302 246 154 75 chrX 66306647 66306901 -96293029 + L1ME4a LINE L1 5772 6061 -60 309 145 0 66 chrX 66307037 66307113 -96292817 + L1ME4a LINE L1 5986 6056 -65 403 239 90 15 chrX 66307203 66307337 -96292593 + L1ME4a LINE L1 5951 6094 -27 509 224 158 0 chrX 66307349 66307532 -96292398 + L1ME4a LINE L1 5894 6105 -16 265 165 124 66 chrX 66307556 66307677 -96292253 + L1MC5 LINE L1 7724 7851 -110 1547 129 14 71 chrX 66307694 66308011 -96291919 - AluJb SINE Alu 0 306 7 395 278 130 24 chrX 66308081 66308250 -96291680 - MIR SINE MIR -56 206 20 24 0 0 0 chrX 66308275 66308299 -96291631 + AT_rich Low_complexity Low_complexity 1 24 0 199 267 0 0 chrX 66308744 66308789 -96291141 + MIR SINE MIR 113 157 -105 194 73 55 36 chrX 66309055 66309110 -96290820 + GA-rich Low_complexity Low_complexity 1 56 0 486 273 58 10 chrX 66309454 66309640 -96290290 - MIR SINE MIR -62 146 2 200 283 163 51 chrX 66309778 66310110 -96289820 - L2 LINE L2 -674 2640 2272 249 246 49 0 chrX 66311185 66311246 -96288684 - MER91A DNA MER1_type -1 195 132 369 242 0 22 chrX 66311252 66311343 -96288587 - MER91A DNA MER1_type -36 160 72 756 269 12 51 chrX 66311500 66311757 -96288173 - MIR SINE MIR -15 247 1 2219 81 7 7 chrX 66311902 66312209 -96287721 - AluSx SINE Alu -5 307 1 292 333 95 0 chrX 66312217 66312343 -96287587 - MIR3 SINE MIR -65 143 6 205 309 0 49 chrX 66312396 66312477 -96287453 - MIR3 SINE MIR -16 192 116 670 247 54 36 chrX 66313265 66313488 -96286442 + MIR SINE MIR 11 237 -25 252 309 98 0 chrX 66313682 66313805 -96286125 - L2 LINE L2 -1 3271 3137 1548 238 126 36 chrX 66314183 66314339 -96285591 + L2 LINE L2 2379 2520 -793 1555 188 0 14 chrX 66314339 66314632 -96285298 + AluJo SINE Alu 1 289 -23 1548 238 126 36 chrX 66314632 66315228 -96284702 + L2 LINE L2 2520 3220 -93 1665 140 11 21 chrX 66315228 66315513 -96284417 - AluJo SINE Alu -19 293 12 1548 238 126 36 chrX 66315513 66315554 -96284376 + L2 LINE L2 3220 3256 -57 2087 117 0 3 chrX 66315948 66316255 -96283675 - AluSg SINE Alu -4 306 1 181 269 19 19 chrX 66316396 66316448 -96283482 - L2 LINE L2 -16 3256 3205 612 279 117 29 chrX 66316502 66316818 -96283112 + L1ME4a LINE L1 5371 5714 -407 901 109 0 20 chrX 66316855 66317002 -96282928 + L1MA4 LINE L1 6157 6300 0 4509 162 23 21 chrX 66317004 66317819 -96282111 - L1MB5 LINE L1 -33 6141 5325 1708 118 0 29 chrX 66317819 66318099 -96281831 - AluJo SINE Alu -10 302 31 1062 184 15 71 chrX 66318103 66318173 -96281757 - L1MB5 LINE L1 -947 5199 5127 1978 123 0 10 chrX 66318173 66318466 -96281464 - AluSx SINE Alu -20 292 3 1062 184 15 71 chrX 66318466 66318661 -96281269 - L1MB5 LINE L1 -1019 5127 4949 1244 105 0 0 chrX 66318661 66318833 -96281097 - AluSg/x SINE Alu -10 302 131 2804 220 26 16 chrX 66318833 66319392 -96280538 - L1MB5 LINE L1 -1196 4950 4381 2346 84 0 0 chrX 66319392 66319702 -96280228 - AluY SINE Alu -1 310 1 2804 220 26 16 chrX 66319702 66319843 -96280087 - L1MB5 LINE L1 -1765 4381 4243 287 240 31 21 chrX 66319834 66319930 -96280000 + L1ME4a LINE L1 5704 5800 -321 * 234 289 0 33 chrX 66319987 66320077 -96279853 + L1ME4a LINE L1 5813 5899 -1909 512 204 19 9 chrX 66320118 66320226 -96279704 + L2 LINE L2 3195 3303 -10 240 284 0 0 chrX 66320230 66320304 -96279626 + L1ME4a LINE L1 5962 6035 -86 408 20 0 0 chrX 66320367 66320416 -96279514 + (CA)n Simple_repeat Simple_repeat 2 50 0 409 327 48 12 chrX 66320555 66320720 -96279210 + L2 LINE L2 2662 2832 -482 333 244 90 76 chrX 66320733 66321090 -96278840 - L1MC5 LINE L1 -19 7942 7581 238 309 197 32 chrX 66321116 66321304 -96278626 + L2 LINE L2 2866 3084 -188 261 173 0 0 chrX 66321375 66321394 -96278536 + GA-rich Low_complexity Low_complexity 1 19 -33 2594 42 0 6 chrX 66321394 66321705 -96278225 + AluY SINE Alu 1 309 -2 261 173 0 0 chrX 66321705 66321737 -96278193 + GA-rich Low_complexity Low_complexity 18 52 0 2227 90 0 7 chrX 66321837 66322147 -96277783 - AluSx SINE Alu -4 308 1 1996 127 0 17 chrX 66322148 66322448 -96277482 - AluSx SINE Alu -17 295 1 1907 126 0 0 chrX 66322463 66322748 -96277182 - AluJb SINE Alu -27 285 1 234 245 102 20 chrX 66322761 66322859 -96277071 - L2 LINE L2 -289 3024 2919 704 273 19 14 chrX 66323112 66323321 -96276609 - MIR SINE MIR -27 235 26 181 222 32 0 chrX 66323486 66323549 -96276381 + CT-rich Low_complexity Low_complexity 2 66 0 254 271 56 28 chrX 66323754 66323861 -96276069 - HAL1 LINE L1 -14 2493 2384 429 255 40 27 chrX 66324126 66324275 -96275655 - MIR SINE MIR -41 221 71 386 278 105 38 chrX 66324390 66324599 -96275331 + MIR SINE MIR 3 225 -37 279 167 17 0 chrX 66324944 66325004 -96274926 - L1ME4a LINE L1 -1 6120 6060 239 103 26 0 chrX 66326321 66326360 -96273570 + L1MB7 LINE L1 6145 6184 0 769 236 84 29 chrX 66326376 66326651 -96273279 + MLT1H LTR MaLR 216 505 -44 443 238 57 0 chrX 66326989 66327094 -96272836 + L2 LINE L2 3161 3271 -1 1981 92 21 7 chrX 66327151 66327432 -96272498 - AluSc SINE Alu -7 302 18 1049 211 154 35 chrX 66327485 66327797 -96272133 - L1MD2 LINE L1 -206 6153 5805 * 5463 179 38 20 chrX 66327783 66328855 -96271075 - L1MD2 LINE L1 -1 6358 5274 2249 103 0 0 chrX 66328855 66329156 -96270774 - AluSx SINE Alu -11 301 1 5463 179 38 20 chrX 66329156 66329334 -96270596 - L1MD2 LINE L1 -1085 5274 5101 297 285 119 57 chrX 66329353 66329546 -96270384 + L2 LINE L2 2445 2649 -665 2232 95 0 7 chrX 66329611 66329915 -96270015 + AluSx SINE Alu 1 302 -10 852 273 18 92 chrX 66330497 66330952 -96268978 - Charlie8 DNA MER1_type -1996 421 1 325 172 35 0 chrX 66330986 66331044 -96268886 - MER94 DNA DNA -74 60 1 206 171 0 24 chrX 66331057 66331098 -96268832 + MIR SINE MIR 19 58 -150 314 261 14 0 chrX 66331129 66331198 -96268732 - L2 LINE L2 -4 3268 3199 5246 133 53 52 chrX 66331213 66331833 -96268097 - L1MC2 LINE L1 0 6344 5718 2035 148 7 0 chrX 66331833 66332160 -96267770 + AluJo SINE Alu 1 329 0 5246 133 53 52 chrX 66332160 66332499 -96267431 - L1MC2 LINE L1 -626 5718 5381 293 170 0 19 chrX 66332508 66332561 -96267369 + Tigger5 DNA MER2_type 28 79 -2244 414 226 24 0 chrX 66332563 66332647 -96267283 - Tigger5 DNA MER2_type -6 2317 2232 * 420 171 37 37 chrX 66332629 66332711 -96267219 + Tigger5 DNA MER2_type 2242 2323 0 371 148 0 0 chrX 66332713 66332774 -96267156 - L1MC2 LINE L1 -954 5379 5319 897 146 0 0 chrX 66332788 66332918 -96267012 - AluJo SINE Alu -178 134 5 2090 150 0 7 chrX 66332948 66333254 -96266676 - AluJb SINE Alu -8 304 1 635 195 40 0 chrX 66333254 66333397 -96266533 - L1MC2 LINE L1 -813 5333 5185 1087 169 50 10 chrX 66333412 66333613 -96266317 + MER3 DNA MER1_type 1 209 0 1055 272 96 58 chrX 66333659 66334489 -96265441 + L2 LINE L2 2451 3308 -5 489 80 0 0 chrX 66334845 66334920 -96265010 + (TA)n Simple_repeat Simple_repeat 2 76 0 23 0 0 0 chrX 66334920 66334943 -96264987 + AT_rich Low_complexity Low_complexity 1 23 0 795 119 0 0 chrX 66334971 66335089 -96264841 + FLAM_C SINE Alu 1 118 -15 26 64 0 0 chrX 66335089 66335136 -96264794 + AT_rich Low_complexity Low_complexity 1 47 0 437 325 42 6 chrX 66335453 66335619 -96264311 - L2 LINE L2 -1 3271 3100 447 290 0 0 chrX 66338995 66339119 -96260811 + MIR SINE MIR 46 169 -93 476 264 200 72 chrX 66339304 66339380 -96260550 + L2 LINE L2 2902 2967 -346 2005 155 0 10 chrX 66339380 66339677 -96260253 - AluJb SINE Alu -18 294 1 476 264 200 72 chrX 66339677 66339876 -96260054 + L2 LINE L2 2967 3232 -81 761 203 0 0 chrX 66339876 66340009 -96259921 - FLAM_A SINE Alu 0 133 1 476 264 200 72 chrX 66340009 66340077 -96259853 + L2 LINE L2 3232 3290 -23 1200 257 51 16 chrX 66340087 66340402 -96259528 + L1MDa LINE L1 639 964 -5576 368 169 220 0 chrX 66340420 66340538 -96259392 - L1ME4a LINE L1 0 6121 5978 477 272 60 43 chrX 66340551 66340786 -96259144 - L1ME4a LINE L1 -106 6015 5777 312 298 216 0 chrX 66341566 66341719 -96258211 + MIR SINE MIR 35 219 -43 1876 146 3 14 chrX 66341893 66342187 -96257743 - AluJb SINE Alu -21 291 1 184 241 11 103 chrX 66343208 66343295 -96256635 + MIR SINE MIR 11 89 -173 * 254 203 0 51 chrX 66343279 66343338 -96256592 + L2 LINE L2 3216 3271 -1 321 145 116 0 chrX 66343339 66343408 -96256522 + MIR SINE MIR 85 161 -101 213 349 0 12 chrX 66343519 66343605 -96256325 + CT-rich Low_complexity Low_complexity 2 86 0 1162 286 65 13 chrX 66345081 66345543 -96254387 - L3 LINE CR1 -1 1576 1091 489 350 8 8 chrX 66345547 66345787 -96254143 - L3 LINE CR1 -595 982 743 1953 150 27 0 chrX 66347310 66347604 -96252326 - AluJo SINE Alu -10 302 1 407 259 63 38 chrX 66348285 66348524 -96251406 + L2 LINE L2 2815 3059 -213 217 226 0 0 chrX 66348721 66348774 -96251156 + L2 LINE L2 3144 3196 -76 225 310 0 0 chrX 66350308 66350366 -96249564 - tRNA-Ile-ATT tRNA tRNA -10 67 10 600 101 0 30 chrX 66350882 66350981 -96248949 - L1PB3 LINE L1 -1 6153 6058 297 294 112 7 chrX 66350982 66351125 -96248805 + MIR SINE MIR 94 251 -11 202 167 0 56 chrX 66351821 66351875 -96248055 + (CAGCT)n Simple_repeat Simple_repeat 2 52 0 212 284 60 0 chrX 66352061 66352128 -96247802 - L2 LINE L2 -16 3256 3186 680 263 22 27 chrX 66352179 66352403 -96247527 - MIR SINE MIR 0 262 40 351 235 130 0 chrX 66352643 66352758 -96247172 + L2 LINE L2 3184 3313 0 2087 109 3 33 chrX 66352784 66353088 -96246842 - AluSx SINE Alu -17 295 1 196 308 131 63 chrX 66353090 66353707 -96246223 - L2 LINE L2 -567 2747 2089 4339 143 38 11 chrX 66353877 66354100 -96245830 - MER44D DNA MER2_type -1882 605 389 2306 90 0 37 chrX 66354100 66354421 -96245509 - AluSx SINE Alu -3 309 1 4339 143 38 11 chrX 66354421 66354911 -96245019 - MER44D DNA MER2_type -2098 389 1 2324 107 27 24 chrX 66354916 66355252 -96244678 - MER1B DNA MER1_type 0 337 1 369 273 14 49 chrX 66355421 66355564 -96244366 + L2 LINE L2 3134 3271 -1 192 346 19 9 chrX 66355842 66355949 -96243981 - L2 LINE L2 -647 2667 2560 2136 139 3 0 chrX 66355977 66356279 -96243651 + AluSx SINE Alu 1 303 -9 2261 106 7 0 chrX 66356281 66356583 -96243347 + AluSg SINE Alu 3 306 -4 183 42 0 0 chrX 66357586 66357610 -96242320 + (TTA)n Simple_repeat Simple_repeat 2 25 0 437 182 0 0 chrX 66357612 66357678 -96242252 - AluJ/FRAM SINE Alu -30 282 217 219 246 9 118 chrX 66357876 66357986 -96241944 - L2 LINE L2 -33 3280 3183 941 241 4 36 chrX 66358212 66358278 -96241652 + MIR SINE MIR 9 76 -186 2515 142 42 0 chrX 66358278 66358687 -96241243 + MSTB LTR MaLR 1 426 0 941 241 4 36 chrX 66358687 66358869 -96241061 + MIR SINE MIR 76 249 -13 2430 86 0 7 chrX 66359777 66360078 -96239852 - AluSx SINE Alu -13 299 1 685 234 14 0 chrX 66360097 66360242 -96239688 + MER117 DNA MER1_type 2 148 -49 544 175 0 0 chrX 66360938 66361035 -96238895 + L1PB4 LINE L1 6058 6154 -2 1495 152 0 8 chrX 66361244 66361481 -96238449 - MER46A DNA MER2_type 0 236 2 451 304 23 88 chrX 66361489 66361795 -96238135 - L2 LINE L2 -15 3257 2972 239 291 172 40 chrX 66362117 66362268 -96237662 - L2 LINE L2 0 3272 3102 562 324 78 37 chrX 66362335 66362893 -96237037 + L2 LINE L2 2622 3272 0 457 311 46 73 chrX 66364374 66364563 -96235367 + L2 LINE L2 2911 3087 -185 2435 84 0 0 chrX 66364563 66364859 -96235071 - AluSc SINE Alu -13 296 1 457 311 46 73 chrX 66364859 66365039 -96234891 + L2 LINE L2 3087 3270 -2 1124 213 44 30 chrX 66366442 66366541 -96233389 + L1MC5 LINE L1 7540 7636 -325 3218 60 70 2 chrX 66366541 66366577 -96233353 - MLT2A1 LTR ERVL 0 444 412 2224 108 0 0 chrX 66366577 66366863 -96233067 - AluSg SINE Alu -24 286 1 3218 60 70 2 chrX 66366863 66367242 -96232688 - MLT2A1 LTR ERVL -32 412 1 1124 213 44 30 chrX 66367242 66367508 -96232422 + L1MC5 LINE L1 7636 7910 -51 708 221 48 56 chrX 66367954 66368185 -96231745 - L2 LINE L2 0 3313 3085 330 294 126 0 chrX 66368559 66368678 -96231252 + L2 LINE L2 3139 3272 0 717 252 90 14 chrX 66368878 66369100 -96230830 + MIR SINE MIR 24 262 0 433 260 53 57 chrX 66369152 66369379 -96230551 - MIR SINE MIR -16 246 21 326 209 54 9 chrX 66369383 66369475 -96230455 + MER58A DNA MER1_type 1 102 -122 4517 146 50 20 chrX 66369490 66370249 -96229681 - L1MB7 LINE L1 -81 6601 5867 1971 147 0 20 chrX 66370249 66370555 -96229375 - AluJo SINE Alu -12 300 1 4517 146 50 20 chrX 66370555 66370596 -96229334 - L1MB7 LINE L1 -815 5867 5829 2065 143 0 3 chrX 66370596 66370890 -96229040 + AluJb SINE Alu 3 295 -17 4517 146 50 20 chrX 66370890 66370984 -96228946 - L1MB7 LINE L1 -853 5829 5686 261 134 73 73 chrX 66370980 66371000 -96228930 - L1MB7 LINE L1 -2444 4200 4181 * 1850 140 6 55 chrX 66371000 66371328 -96228602 - AluJb SINE Alu 0 312 1 261 134 73 73 chrX 66371328 66371389 -96228541 - L1MB7 LINE L1 -2462 4182 4119 1532 165 16 133 chrX 66371391 66371432 -96228498 - MLT2B1 LTR ERVL -2 518 474 192 40 0 0 chrX 66371432 66371457 -96228473 + (TC)n Simple_repeat Simple_repeat 2 26 0 1532 165 16 133 chrX 66371457 66372052 -96227878 - MLT2B1 LTR ERVL -46 474 3 2996 212 126 90 chrX 66372065 66372284 -96227646 - L1MB7 LINE L1 -2594 4050 3840 880 133 0 0 chrX 66372284 66372412 -96227518 - FLAM_C SINE Alu -4 129 2 2996 212 126 90 chrX 66372412 66372612 -96227318 - L1MB7 LINE L1 -2804 3840 3649 2294 111 0 3 chrX 66372612 66372919 -96227011 - AluSx SINE Alu -2 310 5 2996 212 126 90 chrX 66372919 66373187 -96226743 - L1MB7 LINE L1 -2995 3649 3392 1394 108 0 0 chrX 66373187 66373373 -96226557 - U2 snRNA snRNA -1 187 2 2996 212 126 90 chrX 66373373 66374339 -96225591 - L1MB7 LINE L1 -3252 3392 2264 2675 124 50 27 chrX 66374339 66374783 -96225147 + MSTB2 LTR MaLR 1 454 -3 2996 212 126 90 chrX 66374783 66375072 -96224858 - L1MB7 LINE L1 -4380 2264 1987 2127 114 24 0 chrX 66375073 66375362 -96224568 - AluSq SINE Alu -17 296 1 4256 187 77 49 chrX 66375363 66375695 -96224235 - L1MB7 LINE L1 -5228 1314 993 2341 109 0 13 chrX 66375695 66376006 -96223924 - AluSx SINE Alu -5 307 1 4256 187 77 49 chrX 66376006 66376718 -96223212 - L1MB7 LINE L1 -5549 993 241 997 194 11 6 chrX 66376723 66376903 -96223027 + MER58A DNA MER1_type 43 223 -1 1638 158 29 3 chrX 66376912 66377228 -96222702 - MER33 DNA MER1_type 0 324 1 401 274 176 0 chrX 66377239 66377392 -96222538 + MER5A DNA MER1_type 4 183 -6 226 244 51 39 chrX 66377547 66377625 -96222305 - L2 LINE L2 -38 3234 3156 2039 168 22 0 chrX 66378753 66379117 -96220813 + L1MB7 LINE L1 5803 6174 -10 226 165 275 33 chrX 66379306 66379397 -96220533 - L2 LINE L2 -2 3311 3199 2589 59 0 0 chrX 66379793 66380096 -96219834 + AluY SINE Alu 1 303 -8 190 147 0 29 chrX 66380253 66380287 -96219643 + MIR SINE MIR 36 68 -140 464 356 86 34 chrX 66380297 66380564 -96219366 + L2 LINE L2 2584 2864 -450 277 206 83 89 chrX 66381333 66381386 -96218544 - L1ME4a LINE L1 0 6121 6069 1805 167 10 7 chrX 66381386 66381691 -96218239 + AluJo SINE Alu 1 306 -6 277 206 83 89 chrX 66381691 66381817 -96218113 - L1ME4a LINE L1 -52 6069 5943 718 271 96 9 chrX 66381881 66382099 -96217831 - MIR SINE MIR -24 238 2 474 295 53 24 chrX 66382114 66382382 -96217548 + L1MB8 LINE L1 5584 5866 -312 830 276 37 16 chrX 66382768 66383014 -96216916 - MIR SINE MIR -6 256 6 183 42 0 0 chrX 66383266 66383290 -96216640 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 866 212 179 10 chrX 66383714 66383943 -96215987 + MIR SINE MIR 2 258 -4 401 284 61 105 chrX 66383951 66384293 -96215637 - L2 LINE L2 -21 3251 2925 389 292 73 22 chrX 66384535 66384799 -96215131 + L2 LINE L2 2353 2695 -619 378 0 0 0 chrX 66384800 66384842 -96215088 + (CA)n Simple_repeat Simple_repeat 2 43 0 1286 227 84 30 chrX 66384842 66385212 -96214718 + MLT1B LTR MaLR 1 390 0 233 379 76 21 chrX 66385270 66385415 -96214515 + L2 LINE L2 3119 3271 -1 206 311 16 16 chrX 66385619 66385680 -96214250 + MIR SINE MIR 21 81 -181 530 319 67 6 chrX 66385706 66385901 -96214029 - MIR SINE MIR -50 212 9 282 60 100 0 chrX 66386164 66386214 -96213716 - L1MA5 LINE L1 -5 6295 6241 1611 131 11 7 chrX 66386237 66386512 -96213418 - L1MA3 LINE L1 0 6305 6030 1132 89 6 11 chrX 66386512 66386692 -96213238 - L1MA5 LINE L1 -47 6253 6075 269 288 25 0 chrX 66386692 66386772 -96213158 + L2 LINE L2 3226 3307 -6 22 0 0 0 chrX 66387116 66387138 -96212792 + AT_rich Low_complexity Low_complexity 1 22 0 278 155 35 35 chrX 66387634 66387692 -96212238 - L2 LINE L2 0 3272 3215 642 302 49 29 chrX 66387874 66388207 -96211723 + L2 LINE L2 2925 3263 -9 184 206 0 0 chrX 66388269 66388303 -96211627 + MIR SINE MIR 215 248 -14 184 250 0 39 chrX 66388270 66388322 -96211608 + L2 LINE L2 3261 3310 -3 22 0 0 0 chrX 66389061 66389083 -96210847 + AT_rich Low_complexity Low_complexity 1 22 0 389 256 92 62 chrX 66392174 66392369 -96207561 - MIR3 SINE MIR -1 207 7 510 126 48 10 chrX 66392699 66392802 -96207128 - L1MA7 LINE L1 -7 6284 6178 710 136 28 90 chrX 66392803 66392924 -96207006 + L1MA7 LINE L1 5984 6111 -180 731 200 0 0 chrX 66392924 66393075 -96206855 + FLAM_A SINE Alu 1 151 0 2390 145 70 2 chrX 66393082 66393483 -96206447 - MSTA LTR MaLR 0 428 1 710 136 28 90 chrX 66393483 66393528 -96206402 + L1MA7 LINE L1 6117 6149 -142 1065 258 96 64 chrX 66393914 66394526 -96205404 - L1ME3 LINE L1 -211 6020 5373 1774 168 0 44 chrX 66394526 66394842 -96205088 - AluJo SINE Alu -9 303 2 1065 258 96 64 chrX 66394842 66395084 -96204846 - L1ME3 LINE L1 -858 5373 5140 394 324 41 0 chrX 66395131 66395313 -96204617 - MER20B DNA MER1_type -22 197 1 1036 270 49 36 chrX 66395349 66395816 -96204114 - L1ME3 LINE L1 -1155 5060 4588 655 198 0 9 chrX 66395816 66395932 -96203998 - AluJb SINE Alu -197 115 1 21 36 0 0 chrX 66395998 66396026 -96203904 + AT_rich Low_complexity Low_complexity 1 28 0 2785 251 60 3 chrX 66396070 66396815 -96203115 + L2 LINE L2 1816 2603 -711 1466 134 3 48 chrX 66396820 66397110 -96202820 - L1MB8 LINE L1 -6 6172 5896 3103 136 31 18 chrX 66397116 66397444 -96202486 - L1MB8 LINE L1 -357 5827 5486 1921 149 28 0 chrX 66397444 66397732 -96202198 - AluJb SINE Alu -16 296 1 3103 136 31 18 chrX 66397732 66398014 -96201916 - L1MB8 LINE L1 -698 5486 5209 300 89 0 0 chrX 66398005 66398050 -96201880 - L1MB8 LINE L1 -1373 4773 4729 * 2796 224 85 28 chrX 66398039 66399717 -96200213 - L1ME3 LINE L1 -2479 3736 1868 2131 114 0 0 chrX 66399749 66400030 -96199900 + AluSx SINE Alu 1 281 -31 423 91 0 0 chrX 66400030 66400085 -96199845 + FLAM_A SINE Alu 44 98 -44 760 102 0 0 chrX 66400085 66400193 -96199737 + L1PA16 LINE L1 6050 6157 -9 30 89 0 0 chrX 66400193 66400272 -96199658 + AT_rich Low_complexity Low_complexity 1 79 0 481 316 20 58 chrX 66400299 66400593 -96199337 - L1MEd LINE L1 -4153 2157 1875 1148 274 72 54 chrX 66400805 66401158 -96198772 - L1MEd LINE L1 -4731 1579 1234 204 40 0 0 chrX 66401158 66401183 -96198747 + (TTA)n Simple_repeat Simple_repeat 2 26 0 4932 68 25 12 chrX 66401188 66401864 -96198066 - L1PA13 LINE L1 -19 6144 5460 1148 274 72 54 chrX 66401864 66402446 -96197484 - L1MEd LINE L1 -5079 1231 572 1881 167 0 7 chrX 66402446 66402734 -96197196 - AluJb SINE Alu -25 287 2 1148 274 72 54 chrX 66402734 66402846 -96197084 - L1MEd LINE L1 -5738 572 463 1116 167 56 0 chrX 66402927 66403125 -96196805 - MER3 DNA MER1_type 0 209 1 2085 171 120 15 chrX 66403243 66403424 -96196506 + MLT1D LTR MaLR 1 162 -343 2146 145 24 6 chrX 66403424 66403761 -96196169 + MER61A LTR ERV1 1 343 0 2085 171 120 15 chrX 66403761 66404036 -96195894 + MLT1D LTR MaLR 162 505 0 1360 268 60 59 chrX 66404228 66404604 -96195326 - L2 LINE L2 0 3313 2959 2255 111 7 3 chrX 66404604 66404910 -96195020 - AluSx SINE Alu -5 307 1 1360 268 60 59 chrX 66404910 66405098 -96194832 - L2 LINE L2 -354 2959 2773 243 309 210 25 chrX 66405223 66405537 -96194393 + L2 LINE L2 2256 2627 -687 707 317 23 120 chrX 66405638 66406156 -96193774 + L2 LINE L2 2805 3272 0 255 224 0 0 chrX 66406763 66406812 -96193118 + MIR SINE MIR 103 151 -57 1149 268 134 34 chrX 66406812 66407222 -96192708 + L2 LINE L2 2489 2857 -456 2262 111 7 0 chrX 66407222 66407528 -96192402 - AluSg SINE Alu -2 308 1 1149 268 134 34 chrX 66407528 66407821 -96192109 + L2 LINE L2 2857 3298 -15 198 103 0 0 chrX 66407821 66407850 -96192080 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 347 220 0 99 chrX 66408054 66408145 -96191785 - L2 LINE L2 0 3272 3191 201 302 111 0 chrX 66408447 66408510 -96191420 + MIR SINE MIR 37 106 -156 240 125 0 0 chrX 66408519 66408559 -96191371 - L2 LINE L2 -13 3300 3261 2083 32 0 0 chrX 66409321 66409569 -96190361 - L1PA4 LINE L1 0 6155 5908 717 0 0 0 chrX 66409573 66409655 -96190275 + L1PA4 LINE L1 5778 5859 -296 2539 98 22 5 chrX 66409739 66410107 -96189823 + THE1C LTR MaLR 1 374 -1 326 254 14 0 chrX 66411265 66411336 -96188594 - L1MC4 LINE L1 0 8042 7971 2502 234 23 28 chrX 66411339 66412134 -96187796 - L1M4 LINE L1 -1189 5455 4665 2755 231 35 31 chrX 66412179 66413173 -96186757 - L1M4 LINE L1 -2433 4211 3214 573 198 8 0 chrX 66413201 66413327 -96186603 - L1MB4 LINE L1 -4 6176 6050 5333 177 36 4 chrX 66413331 66414935 -96184995 + L1P4 LINE L1 4034 5689 -476 6136 217 43 22 chrX 66414940 66416786 -96183144 - L1M4 LINE L1 -1096 5050 3166 4851 193 85 30 chrX 66416806 66417431 -96182499 - L1M4 LINE L1 -3628 3016 2427 1660 125 101 0 chrX 66417431 66417728 -96182202 - L1PA11 LINE L1 -6 6168 5842 4851 193 85 30 chrX 66417728 66418643 -96181287 - L1M4 LINE L1 -4217 2427 1380 351 324 56 40 chrX 66418722 66419046 -96180884 - L1M4 LINE L1 -5862 680 352 805 50 0 42 chrX 66419168 66419288 -96180642 + L1PA13 LINE L1 6047 6161 -2 3412 245 78 26 chrX 66419459 66420784 -96179146 - HAL1 LINE L1 -21 2486 1093 3553 169 29 9 chrX 66420786 66421479 -96178451 - L1MB4 LINE L1 -45 6135 5429 328 236 25 57 chrX 66421500 66421657 -96178273 - L1M4 LINE L1 -6382 160 9 639 191 13 0 chrX 66421657 66421814 -96178116 - L1MB4 LINE L1 -3420 2726 2568 282 313 195 15 chrX 66421942 66422137 -96177793 + L2 LINE L2 2826 3055 -217 2928 232 69 8 chrX 66422167 66422952 -96176978 + MER69 DNA AcHobo 2 834 -392 1288 217 35 49 chrX 66422953 66423322 -96176608 + MLT1A2 LTR MaLR 6 369 -5 955 148 178 111 chrX 66423324 66423420 -96176510 + MER69 DNA AcHobo 2125 2213 -313 4515 33 6 0 chrX 66423420 66423959 -96175971 + L1PA4 LINE L1 5611 6152 -3 955 148 178 111 chrX 66423959 66424239 -96175691 + MER69 DNA AcHobo 2213 2526 0 2406 65 0 0 chrX 66424303 66424596 -96175334 - AluSg SINE Alu -17 293 1 270 375 71 0 chrX 66424596 66424708 -96175222 + L2 LINE L2 3153 3272 0 620 248 61 6 chrX 66425021 66425205 -96174725 + MIR SINE MIR 60 252 -10 216 97 0 0 chrX 66425208 66425239 -96174691 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 427 338 30 15 chrX 66427030 66427163 -96172767 - MIR SINE MIR -108 154 20 235 370 108 18 chrX 66427241 66427628 -96172302 + L2 LINE L2 926 1347 -1967 346 247 0 0 chrX 66427641 66427722 -96172208 - L1ME LINE L1 -356 5765 5685 665 306 40 8 chrX 66427763 66428011 -96171919 + L2 LINE L2 1767 2022 -1292 528 229 284 30 chrX 66428019 66428220 -96171710 - MIR SINE MIR 0 262 11 1688 159 4 16 chrX 66428220 66428478 -96171452 - AluJo SINE Alu -57 255 1 1043 292 74 38 chrX 66428478 66429090 -96170840 + L2 LINE L2 2687 3313 0 1004 145 13 90 chrX 66429346 66429580 -96170350 + MER20 DNA MER1_type 1 216 -3 268 277 50 20 chrX 66430063 66430164 -96169766 + MIR SINE MIR 156 259 -3 245 257 143 0 chrX 66430204 66430274 -96169656 + MIR SINE MIR 173 252 -10 674 266 72 22 chrX 66430332 66430554 -96169376 + MIR SINE MIR 20 252 -10 565 214 186 0 chrX 66430950 66431095 -96168835 - MIR SINE MIR 0 262 91 248 184 20 20 chrX 66431288 66431337 -96168593 + L1ME LINE L1 463 511 -6019 345 271 25 16 chrX 66431344 66431466 -96168464 + L1ME LINE L1 555 677 -5853 5382 164 78 31 chrX 66431531 66431890 -96168040 + L1ME LINE L1 1021 1362 -5178 2159 138 0 0 chrX 66431890 66432188 -96167742 + AluSx SINE Alu 1 298 -14 5382 164 78 31 chrX 66432188 66432831 -96167099 + L1ME LINE L1 1362 2108 -4432 252 0 0 0 chrX 66432831 66432859 -96167071 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 5382 164 78 31 chrX 66432859 66433236 -96166694 + L1ME LINE L1 2108 2466 -4074 15985 122 20 105 chrX 66433251 66436799 -96163131 + L1PA7 LINE L1 12 3256 -2890 * 42288 36 1 1 chrX 66436798 66442892 -96157038 + L1PA3 LINE L1 52 6144 -11 15465 79 28 11 chrX 66442897 66445785 -96154145 + L1PA7 LINE L1 3244 6152 -2 886 139 17 41 chrX 66445792 66446037 -96153893 + L1ME LINE L1 2479 2718 -3822 2921 210 57 8 chrX 66446069 66446794 -96153136 + L1MD2 LINE L1 5585 6344 -15 616 259 103 29 chrX 66446788 66447079 -96152851 + L1MDb LINE L1 1164 1432 -5155 * 1124 165 123 9 chrX 66447079 66447291 -96152639 + MER46A DNA MER2_type 1 236 0 616 259 103 29 chrX 66447291 66447390 -96152540 + L1MDb LINE L1 1432 1522 -5065 2101 151 0 0 chrX 66447390 66447701 -96152229 - AluSx SINE Alu -1 311 1 616 259 103 29 chrX 66447701 66447902 -96152028 + L1MDb LINE L1 1522 1841 -4746 3426 264 70 46 chrX 66447903 66448378 -96151552 + L1MEc LINE L1 27 489 -5907 2254 92 0 0 chrX 66448378 66448698 -96151232 + AluSx SINE Alu 1 320 0 3426 264 70 46 chrX 66448698 66449369 -96150561 + L1MEc LINE L1 489 1143 -5253 1595 178 7 41 chrX 66449369 66449661 -96150269 + AluJo SINE Alu 1 282 -30 569 14 27 0 chrX 66449665 66449738 -96150192 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 3426 264 70 46 chrX 66449738 66450370 -96149560 + L1MEc LINE L1 1145 1855 -4541 8664 196 42 10 chrX 66450556 66452517 -96147413 + Charlie1 DNA MER1_type 606 2630 -131 689 232 5 21 chrX 66452527 66452721 -96147209 + L1MEc LINE L1 1864 2054 -4342 2336 112 0 6 chrX 66452721 66453035 -96146895 + AluSx SINE Alu 1 312 0 3180 225 42 16 chrX 66453072 66454001 -96145929 + L1M4 LINE L1 3641 4593 -1553 225 94 0 0 chrX 66454186 66454218 -96145712 + (CA)n Simple_repeat Simple_repeat 2 33 0 463 355 227 17 chrX 66454965 66455491 -96144439 + L2 LINE L2 2622 3267 -5 330 292 43 103 chrX 66455837 66456022 -96143908 + L2 LINE L2 3089 3262 -10 2269 110 0 3 chrX 66456341 66456642 -96143288 - AluSx SINE Alu -12 300 1 212 256 0 67 chrX 66456645 66456735 -96143195 - MIR SINE MIR -6 256 173 511 200 0 0 chrX 66459103 66459203 -96140727 + MER94 DNA DNA 1 100 -34 287 203 14 0 chrX 66461055 66461124 -96138806 + L1ME1 LINE L1 6092 6161 -5 216 147 0 0 chrX 66461757 66461791 -96138139 - L2 LINE L2 -88 3225 3192 219 210 16 65 chrX 66462292 66462354 -96137576 - L2 LINE L2 -17 3255 3197 454 345 44 55 chrX 66462440 66462715 -96137215 - L2 LINE L2 -1 3271 3000 3675 202 64 15 chrX 66462728 66463382 -96136548 + L1MD2 LINE L1 5453 6161 -198 306 0 0 0 chrX 66463382 66463416 -96136514 + (CA)n Simple_repeat Simple_repeat 2 35 0 3675 202 64 15 chrX 66463416 66463623 -96136307 + L1MD2 LINE L1 6161 6356 -3 293 0 0 26 chrX 66464994 66465032 -96134898 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 285 322 81 0 chrX 66465032 66465119 -96134811 - L2 LINE L2 -13 3259 3166 1635 145 97 0 chrX 66465393 66465662 -96134268 - AluJo SINE Alu -17 295 1 190 233 0 0 chrX 66465900 66465943 -96133987 - L2 LINE L2 -8 3305 3263 2165 89 7 0 chrX 66466072 66466354 -96133576 + AluSx SINE Alu 1 284 -28 521 15 15 0 chrX 66466354 66466420 -96133510 + (CATA)n Simple_repeat Simple_repeat 2 68 0 239 326 61 15 chrX 66466844 66466976 -96132954 + L2 LINE L2 1845 1982 -1332 4281 168 39 32 chrX 66467049 66468258 -96131672 - L1MB8 LINE L1 -6 6172 4951 2589 4 0 0 chrX 66468258 66468571 -96131359 - AluYa5 SINE Alu 0 313 1 4281 168 39 32 chrX 66468571 66468901 -96131029 - L1MB8 LINE L1 -1227 4951 4625 508 352 74 46 chrX 66468947 66469592 -96130338 + L2 LINE L2 2376 3042 -230 1076 206 32 24 chrX 66469614 66469867 -96130063 - MIR SINE MIR -3 259 5 323 387 43 12 chrX 66470003 66470256 -96129674 + L2 LINE L2 2715 2975 -339 230 259 0 17 chrX 66470545 66470603 -96129327 + L2 LINE L2 3257 3313 0 264 30 0 0 chrX 66472020 66472053 -96127877 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 615 266 141 0 chrX 66472769 66472968 -96126962 + MIR SINE MIR 21 247 -15 206 255 20 0 chrX 66472937 66472988 -96126942 + L2 LINE L2 3262 3313 0 * 2256 96 7 10 chrX 66474860 66475161 -96124769 - AluSx SINE Alu -12 300 1 1663 130 49 24 chrX 66476571 66476598 -96123332 - THE1C LTR MaLR 0 364 339 5424 57 7 0 chrX 66476598 66477282 -96122648 + L1PA8 LINE L1 5478 6166 -6 1663 130 49 24 chrX 66477282 66477588 -96122342 - THE1C LTR MaLR -25 339 1 1975 157 0 23 chrX 66477810 66478115 -96121815 - AluSx SINE Alu -14 298 1 393 231 94 145 chrX 66478925 66479180 -96120750 + MIR SINE MIR 1 242 -20 2271 180 36 2 chrX 66479422 66479834 -96120096 + MSTB LTR MaLR 1 426 0 22 0 0 0 chrX 66480227 66480249 -96119681 + AT_rich Low_complexity Low_complexity 1 22 0 404 207 7 35 chrX 66481747 66481892 -96118038 + A-rich Low_complexity Low_complexity 5 145 0 1975 72 79 4 chrX 66482044 66482342 -96117588 + AluY SINE Alu 1 318 0 938 176 6 29 chrX 66482728 66482898 -96117032 + AluJb SINE Alu 131 296 -16 7627 25 0 0 chrX 66485683 66486960 -96112970 + L1PA3 LINE L1 4868 6144 -11 357 204 142 9 chrX 66488394 66488579 -96111351 - L1MC/D LINE L1 -722 5432 5345 375 294 60 56 chrX 66489005 66489274 -96110656 - L2 LINE L2 -2 3311 3042 639 213 109 23 chrX 66489558 66489732 -96110198 + MER5A DNA MER1_type 1 189 0 359 179 40 220 chrX 66489740 66489899 -96110031 - MER58C DNA MER1_type -2205 215 106 1572 201 31 10 chrX 66489899 66490193 -96109737 - AluJo SINE Alu -12 300 1 359 179 40 220 chrX 66490193 66490256 -96109674 - MER58C DNA MER1_type -2314 106 33 230 354 10 21 chrX 66492896 66492992 -96106938 - L2 LINE L2 -56 3216 3122 606 193 16 30 chrX 66493104 66493290 -96106640 + MER92B LTR ERV1 1 184 -370 557 193 0 21 chrX 66493443 66493583 -96106347 + MER31-int LTR ERV1 1150 1286 -3650 467 226 6 54 chrX 66493633 66493801 -96106129 + MER31-int LTR ERV1 1287 1446 -3490 439 257 52 14 chrX 66493958 66494168 -96105762 + MER31-int LTR ERV1 1698 1915 -3021 512 264 0 85 chrX 66494385 66494620 -96105310 + MER31-int LTR ERV1 2853 3067 -1869 2498 119 40 35 chrX 66495020 66495448 -96104482 + MSTB1 LTR MaLR 3 432 0 1675 158 13 4 chrX 66495483 66498825 -96101105 + L1PA14 LINE L1 2634 6152 -9 2317 92 0 13 chrX 66498845 66499151 -96100779 + AluY SINE Alu 1 302 -9 3131 215 45 75 chrX 66499294 66500343 -96099587 + MER31-int LTR ERV1 3171 4187 -749 4337 159 15 67 chrX 66500369 66500743 -96099187 - L1MB5 LINE L1 -8 6166 5774 192 40 0 0 chrX 66500743 66500768 -96099162 + (CA)n Simple_repeat Simple_repeat 1 25 0 4337 159 15 67 chrX 66500768 66501489 -96098441 - L1MB5 LINE L1 -400 5774 5113 594 257 33 37 chrX 66501556 66501740 -96098190 + LTR37A LTR ERV1 1 185 -241 1378 167 143 4 chrX 66501740 66501998 -96097932 + AluJo SINE Alu 1 294 -18 594 257 33 37 chrX 66501998 66502058 -96097872 + LTR37A LTR ERV1 185 244 -182 409 252 0 0 chrX 66502098 66502209 -96097721 + MER31-int LTR ERV1 4359 4469 -467 1995 159 29 65 chrX 66502444 66502891 -96097039 - MSTB1 LTR MaLR 0 432 2 1934 146 14 3 chrX 66503065 66503353 -96096577 - AluJb SINE Alu -21 291 1 524 222 4 30 chrX 66503595 66503784 -96096146 + MER92B LTR ERV1 1 182 -372 425 104 15 0 chrX 66503851 66503918 -96096012 + MER92C LTR ERV1 487 554 0 1016 228 0 5 chrX 66504471 66504682 -96095248 - MIR SINE MIR 0 262 53 1824 167 66 15 chrX 66504707 66505103 -96094827 + MSTC LTR MaLR 1 416 -12 1118 161 0 71 chrX 66505112 66505310 -96094620 - L1MA10 LINE L1 -23 6311 6135 2166 116 3 26 chrX 66505310 66505613 -96094317 - AluSx SINE Alu -16 296 1 1118 161 0 71 chrX 66505613 66505681 -96094249 - L1MA10 LINE L1 -199 6135 6064 * 1426 155 42 19 chrX 66505637 66505947 -96093983 + L1MB1 LINE L1 5700 6016 -152 634 296 83 74 chrX 66508912 66509506 -96090424 + L2 LINE L2 2636 3235 -37 2134 137 0 7 chrX 66509533 66509832 -96090098 - AluSx SINE Alu -15 297 1 209 333 51 13 chrX 66510910 66510988 -96088942 + L3 LINE CR1 1491 1571 -6 2725 149 58 0 chrX 66511115 66511612 -96088318 - L1MA9 LINE L1 -13 6299 5774 231 313 38 12 chrX 66511719 66511799 -96088131 - L2 LINE L2 -49 3223 3142 800 270 53 76 chrX 66511816 66512328 -96087602 - L2 LINE L2 -122 3191 2708 187 337 30 66 chrX 66512789 66512955 -96086975 + L2 LINE L2 1135 1294 -2020 571 250 131 0 chrX 66512988 66513148 -96086782 + L2 LINE L2 2724 2904 -410 3677 165 53 8 chrX 66513196 66514231 -96085699 - L1M4 LINE L1 -588 5596 4508 1279 198 15 28 chrX 66514306 66514630 -96085300 - L1MB8 LINE L1 -1 6177 5858 3335 147 62 27 chrX 66514647 66515314 -96084616 - L1MC2 LINE L1 -31 6313 5624 2956 159 56 18 chrX 66515307 66515800 -96084130 - L1MB8 LINE L1 -304 5880 5407 * 2013 135 0 33 chrX 66515800 66516104 -96083826 - AluJb SINE Alu -18 294 1 2956 159 56 18 chrX 66516104 66516555 -96083375 - L1MB8 LINE L1 -777 5407 4902 2246 245 85 20 chrX 66516600 66517495 -96082435 - L1MC4 LINE L1 0 8042 7090 1227 205 78 0 chrX 66517579 66517862 -96082068 + L1MC4 LINE L1 6698 7002 -1040 328 289 18 26 chrX 66518323 66518437 -96081493 + MIR SINE MIR 73 185 -77 268 293 301 12 chrX 66518515 66518764 -96081166 + L2 LINE L2 1679 1999 -1315 322 214 167 0 chrX 66518849 66518933 -96080997 - MER63 DNA MER1_type -337 725 2 984 282 80 33 chrX 66519086 66519636 -96080294 - L1MC4 LINE L1 -1919 5889 5314 392 267 124 32 chrX 66519653 66519870 -96080060 + L2 LINE L2 1985 2221 -1093 848 251 23 18 chrX 66519916 66520135 -96079795 - MIR SINE MIR -10 252 33 1114 216 28 0 chrX 66520165 66520383 -96079547 + MER58A DNA MER1_type 1 224 0 316 305 122 8 chrX 66520383 66520514 -96079416 + L2 LINE L2 2215 2360 -954 556 197 111 0 chrX 66520568 66520685 -96079245 - MER117 DNA MER1_type 0 197 68 232 292 22 11 chrX 66520692 66520781 -96079149 - L2 LINE L2 -712 2602 2513 398 173 49 0 chrX 66521112 66521193 -96078737 - MER1B DNA MER1_type 0 333 249 * 969 150 12 0 chrX 66521191 66521351 -96078579 - MER1B DNA MER1_type -67 230 69 287 367 55 0 chrX 66521382 66521491 -96078439 + L2 LINE L2 3136 3250 -22 386 189 255 19 chrX 66521693 66521761 -96078169 - L2 LINE L2 0 3313 3262 2338 45 0 7 chrX 66521761 66522048 -96077882 + AluY SINE Alu 27 311 0 386 189 255 19 chrX 66522048 66522085 -96077845 - L2 LINE L2 -51 3262 3183 620 291 113 86 chrX 66522089 66522155 -96077775 + L2 LINE L2 2678 2741 -531 737 202 0 16 chrX 66522155 66522279 -96077651 + FLAM_A SINE Alu 1 122 -11 620 291 113 86 chrX 66522279 66522805 -96077125 + L2 LINE L2 2741 3270 -2 727 336 96 48 chrX 66522835 66523774 -96076156 + L2 LINE L2 2251 3251 -21 325 245 41 71 chrX 66523846 66523944 -96075986 + L2 LINE L2 3178 3272 0 2362 99 0 0 chrX 66523977 66524280 -96075650 - AluSq SINE Alu -10 303 1 422 274 105 0 chrX 66524383 66524507 -96075423 + L2 LINE L2 3136 3272 0 * 641 279 134 17 chrX 66524492 66524790 -96075140 + L3 LINE CR1 1187 1519 -58 304 333 110 36 chrX 66524854 66525073 -96074857 + L2 LINE L2 3030 3264 -8 273 352 50 38 chrX 66525168 66525327 -96074603 - L2 LINE L2 -2 3270 3110 259 221 15 88 chrX 66525332 66525368 -96074562 + L2 LINE L2 3251 3281 -32 2414 165 30 35 chrX 66525368 66525876 -96074054 + MLT1D LTR MaLR 1 505 0 259 221 15 88 chrX 66525876 66525907 -96074023 + L2 LINE L2 3281 3313 0 1832 139 155 11 chrX 66525953 66526327 -96073603 + MSTA LTR MaLR 1 428 0 222 37 0 0 chrX 66526876 66526903 -96073027 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 482 301 84 62 chrX 66526936 66527398 -96072532 - L2 LINE L2 -10 3262 2743 2749 160 30 43 chrX 66527741 66528270 -96071660 - L1MB7 LINE L1 -97 6087 5553 213 59 29 0 chrX 66528270 66528304 -96071626 + (TTTTA)n Simple_repeat Simple_repeat 2 155 0 1548 194 0 41 chrX 66528304 66528598 -96071332 - AluJo SINE Alu -1 315 1 2749 160 30 43 chrX 66528598 66528678 -96071252 - L1MB7 LINE L1 -629 5555 5485 822 127 8 24 chrX 66528678 66528804 -96071126 - FRAM SINE Alu -8 168 45 3922 180 24 12 chrX 66528808 66529604 -96070326 - L1MB7 LINE L1 -743 5403 4610 * 4222 193 37 30 chrX 66529586 66530492 -96069438 + L1M4 LINE L1 3503 4401 -1745 219 69 0 0 chrX 66530492 66530521 -96069409 + (TA)n Simple_repeat Simple_repeat 2 30 0 2008 147 7 0 chrX 66530521 66530813 -96069117 - AluSx SINE Alu -18 294 1 4222 193 37 30 chrX 66530813 66530907 -96069023 + L1M4 LINE L1 4400 4511 -1635 266 348 0 0 chrX 66533311 66533380 -96066550 - tRNA-Ile-ATT tRNA tRNA -3 74 6 2325 113 0 0 chrX 66534379 66534688 -96065242 - AluSx SINE Alu -3 309 1 1887 108 41 65 chrX 66535117 66535419 -96064511 + L1MC3 LINE L1 7426 7720 -65 2336 59 0 35 chrX 66535419 66535744 -96064186 - AluSc SINE Alu 0 315 1 1887 108 41 65 chrX 66535744 66535809 -96064121 + L1MC3 LINE L1 7720 7785 0 221 258 0 65 chrX 66536520 66536582 -96063348 - L2 LINE L2 0 3272 3215 203 196 22 0 chrX 66536914 66536960 -96062970 - L2 LINE L2 -4 3309 3263 2411 241 77 42 chrX 66537149 66538085 -96061845 - L2 LINE L2 -25 3288 2313 204 371 76 24 chrX 66538192 66538402 -96061528 + L2 LINE L2 2397 2617 -697 1070 226 48 0 chrX 66539071 66539319 -96060611 - MIR SINE MIR -2 260 1 326 242 0 44 chrX 66539876 66539967 -96059963 - MER5A DNA MER1_type -5 184 98 760 182 38 6 chrX 66541555 66541714 -96058216 - MIR SINE MIR -1 261 98 406 329 101 46 chrX 66543069 66543763 -96056167 + L2 LINE L2 1564 2295 -1019 719 240 148 13 chrX 66543822 66544051 -96055879 + MIR SINE MIR 3 262 0 466 302 91 44 chrX 66544071 66544389 -96055541 + L2 LINE L2 2429 2761 -553 274 343 93 0 chrX 66544395 66544535 -96055395 - MER5A DNA MER1_type 0 189 37 * 357 275 100 17 chrX 66544420 66544540 -96055390 + MER5B DNA MER1_type 29 158 -20 212 0 36 0 chrX 66544880 66544908 -96055022 + (TC)n Simple_repeat Simple_repeat 2 30 0 1222 133 88 0 chrX 66544908 66545089 -96054841 - AluJo SINE Alu -30 282 86 1013 183 21 64 chrX 66545092 66545327 -96054603 - MER106A DNA MER1_type -11 225 1 499 341 51 29 chrX 66545332 66545643 -96054287 + L2 LINE L2 1963 2280 -1034 560 196 22 0 chrX 66545653 66545745 -96054185 + MER5A DNA MER1_type 13 106 -83 201 325 199 35 chrX 66545827 66546230 -96053700 + L2 LINE L2 2319 2787 -527 192 346 24 24 chrX 66546461 66546588 -96053342 + L2 LINE L2 2825 2951 -321 240 300 100 44 chrX 66546597 66546687 -96053243 - MIR SINE MIR -167 95 1 315 130 0 0 chrX 66546715 66546769 -96053161 + (CA)n Simple_repeat Simple_repeat 2 55 0 276 317 12 0 chrX 66546805 66546887 -96053043 + MER112 DNA MER1_type 178 260 0 306 0 0 0 chrX 66547284 66547318 -96052612 + (CA)n Simple_repeat Simple_repeat 1 34 0 218 260 0 0 chrX 66547840 66547890 -96052040 + L2 LINE L2 3221 3270 -2 258 331 65 8 chrX 66547947 66548071 -96051859 + L2 LINE L2 2722 2852 -462 23 33 0 0 chrX 66548272 66548302 -96051628 + AT_rich Low_complexity Low_complexity 1 30 0 1643 159 13 67 chrX 66548384 66548535 -96051395 + AluJo SINE Alu 1 128 -184 2279 100 0 10 chrX 66548535 66548834 -96051096 + AluSq SINE Alu 3 298 -15 1643 159 13 67 chrX 66548834 66548996 -96050934 + AluJo SINE Alu 128 297 -15 225 149 0 21 chrX 66549010 66549057 -96050873 - LTR66 LTR ERVL -172 438 393 334 284 81 83 chrX 66549058 66549245 -96050685 - L1ME4a LINE L1 -94 6027 5841 2113 99 0 7 chrX 66549245 66549548 -96050382 - AluSc SINE Alu 0 301 1 334 284 81 83 chrX 66549548 66549754 -96050176 - L1ME4a LINE L1 -280 5841 5634 1007 216 0 0 chrX 66549821 66549992 -96049938 + MER8 DNA MER2_type 7 177 -62 268 207 103 0 chrX 66549969 66550027 -96049903 + MER2 DNA MER2_type 282 345 0 * 458 178 0 0 chrX 66550027 66550098 -96049832 - Tigger2 DNA MER2_type -2647 71 1 239 263 81 0 chrX 66550103 66550202 -96049728 - L1P LINE L1 -725 5426 5320 1241 137 5 0 chrX 66550396 66550593 -96049337 + L1PB1 LINE L1 3 200 -6663 13007 133 50 83 chrX 66550595 66553139 -96046791 + L1PB1 LINE L1 636 3263 -3604 2167 80 45 0 chrX 66553139 66553426 -96046504 + AluY SINE Alu 1 300 -11 13007 133 50 83 chrX 66553426 66555242 -96044688 + L1PB1 LINE L1 3263 4695 -2172 10403 46 3 106 chrX 66555242 66556787 -96043143 + SVA Other Other 1 1386 0 13007 133 50 83 chrX 66556787 66558891 -96041039 + L1PB1 LINE L1 4695 6867 0 34 55 0 0 chrX 66558891 66558946 -96040984 + AT_rich Low_complexity Low_complexity 1 55 0 2431 91 0 0 chrX 66559078 66559386 -96040544 - AluSx SINE Alu -4 308 1 1664 160 35 3 chrX 66559473 66559782 -96040148 + AluJo SINE Alu 1 312 0 260 319 31 18 chrX 66559837 66560000 -96039930 - L1ME LINE L1 -351 5770 5606 2282 78 0 4 chrX 66560092 66560373 -96039557 + AluSg SINE Alu 9 288 -22 399 177 88 44 chrX 66560386 66560499 -96039431 - L1M3 LINE L1 -692 5429 5317 306 298 107 36 chrX 66560841 66561066 -96038864 - L1M3 LINE L1 -1219 4927 4687 278 309 45 0 chrX 66561156 66561266 -96038664 - L1ME LINE L1 -459 5662 5548 224 244 0 0 chrX 66561391 66561436 -96038494 + L2 LINE L2 3269 3313 0 2031 145 7 7 chrX 66562069 66562379 -96037551 + AluJo SINE Alu 1 310 -2 854 150 0 15 chrX 66562381 66562514 -96037416 + FLAM_C SINE Alu 1 131 -2 237 182 0 0 chrX 66562518 66562573 -96037357 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2177 102 3 0 chrX 66563068 66563380 -96036550 + AluSx SINE Alu 1 313 0 528 279 55 24 chrX 66563758 66563923 -96036007 - MIR3 SINE MIR -23 185 16 434 256 144 39 chrX 66564384 66564564 -96035366 - MIR3 SINE MIR -5 203 5 482 290 136 6 chrX 66565537 66565699 -96034231 + MIR SINE MIR 32 214 -48 487 248 58 39 chrX 66565993 66566175 -96033755 + MER5A DNA MER1_type 4 189 0 1269 57 13 6 chrX 66566670 66566827 -96033103 + AluSc SINE Alu 138 295 -14 2563 60 0 0 chrX 66567126 66567428 -96032502 - AluY SINE Alu -9 302 1 2486 73 3 6 chrX 66567758 66568072 -96031858 - AluSq SINE Alu 0 313 1 180 0 0 0 chrX 66569429 66569449 -96030481 + (A)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chrX 66569588 66569611 -96030319 + (T)n Simple_repeat Simple_repeat 1 23 0 343 327 122 6 chrX 66570205 66570361 -96029569 - MIR SINE MIR -64 198 25 222 293 172 10 chrX 66570567 66570666 -96029264 - L2 LINE L2 -2 3270 3156 2292 47 44 13 chrX 66570666 66570964 -96028966 - AluY SINE Alu -4 307 1 1207 291 34 22 chrX 66571821 66572237 -96027693 + L2 LINE L2 2305 2725 -589 210 314 174 17 chrX 66572419 66572591 -96027339 - L2 LINE L2 -1448 1866 1668 227 233 55 14 chrX 66573098 66573171 -96026759 + MIR SINE MIR 49 124 -138 737 272 94 9 chrX 66573414 66573638 -96026292 + MIR SINE MIR 17 259 -3 525 242 73 8 chrX 66573803 66573927 -96026003 + MER94 DNA DNA 1 132 -2 28 0 0 0 chrX 66573981 66574009 -96025921 + AT_rich Low_complexity Low_complexity 1 28 0 2272 77 0 11 chrX 66574398 66574763 -96025167 + AluSx SINE Alu 1 362 0 32 26 0 0 chrX 66574881 66574920 -96025010 + AT_rich Low_complexity Low_complexity 1 39 0 294 29 0 0 chrX 66575942 66575977 -96023953 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chrX 66577590 66577614 -96022316 + AT_rich Low_complexity Low_complexity 1 24 0 504 352 15 0 chrX 66578936 66579132 -96020798 + L1ME LINE L1 5547 5745 -376 358 291 89 44 chrX 66579387 66579568 -96020362 + MIR SINE MIR 20 206 -56 315 306 36 45 chrX 66579944 66580055 -96019875 - MER5B DNA MER1_type -6 172 63 2299 46 0 0 chrX 66580956 66581239 -96018691 - L1PA5 LINE L1 0 6154 5872 37848 83 10 6 chrX 66581659 66587778 -96012152 + L1PA6 LINE L1 12 6154 0 472 252 82 68 chrX 66588138 66588344 -96011586 + L2 LINE L2 3060 3268 -45 2476 53 0 17 chrX 66589546 66589845 -96010085 - AluY SINE Alu -17 294 1 234 377 0 0 chrX 66589927 66590033 -96009897 + L1ME LINE L1 5501 5606 -515 400 132 0 40 chrX 66590050 66590126 -96009804 - L1M4b LINE L1 -5940 919 847 * 4418 205 48 98 chrX 66590123 66590885 -96009045 + L1MB8 LINE L1 2732 3530 -2616 591 184 0 0 chrX 66590885 66591017 -96008913 + FLAM_A SINE Alu 12 143 0 4418 205 48 98 chrX 66591017 66591836 -96008094 + L1MB8 LINE L1 3530 4332 -1814 5162 136 6 6 chrX 66591837 66592673 -96007257 + L1MB1 LINE L1 5333 6168 0 2485 203 70 20 chrX 66592666 66593311 -96006619 + L1MB8 LINE L1 4312 4988 -1158 * 2581 196 64 19 chrX 66593317 66593728 -96006202 + MER68 LTR ERV1 1 443 -119 1491 79 9 0 chrX 66593728 66593942 -96005988 - L1MA3 LINE L1 0 6305 6090 2581 196 64 19 chrX 66593942 66594061 -96005869 + MER68 LTR ERV1 443 555 -7 3487 158 28 8 chrX 66594071 66594944 -96004986 + L1MB8 LINE L1 4999 5883 -295 382 210 260 0 chrX 66595539 66595639 -96004291 + L2 LINE L2 3184 3309 -4 509 264 101 0 chrX 66595663 66595792 -96004138 - MER5A DNA MER1_type 0 189 48 626 178 147 25 chrX 66596919 66597076 -96002854 + FAM SINE Alu 1 45 -4 2966 112 47 9 chrX 66597439 66597903 -96002027 - MER31A LTR ERV1 0 485 4 502 182 51 82 chrX 66598602 66598700 -96001230 + MER5A DNA MER1_type 4 106 -83 659 313 14 42 chrX 66600433 66600647 -95999283 + MIR SINE MIR 49 256 -6 1638 103 4 0 chrX 66602185 66602427 -95997503 - L1MA4A LINE L1 -4 6299 6057 321 140 0 0 chrX 66602549 66602606 -95997324 + (CA)n Simple_repeat Simple_repeat 1 57 0 7356 82 10 11 chrX 66602778 66603869 -95996061 - L1MA3 LINE L1 0 6305 5215 1778 102 0 16 chrX 66603869 66604113 -95995817 - HSMAR1 DNA Mariner -770 517 278 4347 136 67 1 chrX 66604114 66604796 -95995134 - L1M1 LINE L1 -6394 1171 445 21 36 0 0 chrX 66606152 66606180 -95993750 + AT_rich Low_complexity Low_complexity 1 28 0 4716 136 4 4 chrX 66606188 66606969 -95992961 - L1MA4 LINE L1 -6 6294 5514 1100 259 36 89 chrX 66607755 66608420 -95991510 + L1MC4a LINE L1 5255 5884 -1924 * 2951 195 17 25 chrX 66607844 66608664 -95991266 + L1MB8 LINE L1 5335 6127 -43 762 285 53 12 chrX 66608666 66608890 -95991040 + L1MC4 LINE L1 5606 5848 -1960 1296 261 132 30 chrX 66608890 66609430 -95990500 + MLT1G1 LTR MaLR 1 595 0 762 285 53 12 chrX 66609430 66609528 -95990402 + L1MC4 LINE L1 5848 5941 -1867 279 0 0 0 chrX 66609583 66609614 -95990316 + (CA)n Simple_repeat Simple_repeat 2 32 0 2565 214 64 61 chrX 66609784 66610600 -95989330 + L1MC4 LINE L1 7206 8023 -19 205 378 43 16 chrX 66610952 66611137 -95988793 - L2 LINE L2 -806 2508 2319 2114 233 81 3 chrX 66611137 66611733 -95988197 + L1M1 LINE L1 2648 3289 -4276 5801 166 15 133 chrX 66611756 66611896 -95988034 + L1M1 LINE L1 3346 3501 -4064 749 67 10 0 chrX 66611896 66612000 -95987930 + (GGAA)n Simple_repeat Simple_repeat 3 107 0 5801 166 15 133 chrX 66612000 66612287 -95987643 + L1M1 LINE L1 3501 3820 -3745 1699 169 7 10 chrX 66612287 66612577 -95987353 + AluJo SINE Alu 1 289 -23 5801 166 15 133 chrX 66612577 66613524 -95986406 + L1M1 LINE L1 3820 4657 -2908 1210 185 0 19 chrX 66613524 66613740 -95986190 + AluJb SINE Alu 87 298 -14 5801 166 15 133 chrX 66613740 66614159 -95985771 + L1M1 LINE L1 4657 5124 -2441 1031 209 14 0 chrX 66614185 66614396 -95985534 + LTR52 LTR ERVL 205 418 -3 224 231 77 31 chrX 66614472 66614537 -95985393 + MIR SINE MIR 189 256 -6 553 301 135 9 chrX 66614635 66614864 -95985066 - MIR SINE MIR 0 262 5 370 299 95 0 chrX 66616007 66616144 -95983786 - MIR SINE MIR -77 185 36 458 228 59 0 chrX 66616752 66616853 -95983077 - L2 LINE L2 0 3313 3207 435 278 46 0 chrX 66617544 66617652 -95982278 - L2 LINE L2 -1 3271 3159 32 0 0 0 chrX 66619598 66619630 -95980300 + AT_rich Low_complexity Low_complexity 1 32 0 894 212 50 36 chrX 66619994 66620412 -95979518 + L1MC4 LINE L1 6945 7441 -601 2568 188 30 13 chrX 66620412 66620930 -95979000 - MER54A LTR ERVL 0 901 79 1279 227 70 54 chrX 66620977 66621301 -95978629 + L1MC4 LINE L1 7436 7753 -289 3666 126 12 21 chrX 66621301 66621906 -95978024 - L1PA15 LINE L1 0 6165 5567 1613 137 0 0 chrX 66621906 66622133 -95977797 - AluSx SINE Alu -48 264 38 1279 227 70 54 chrX 66622133 66622234 -95977696 + L1MC4 LINE L1 7752 7869 -173 281 186 21 31 chrX 66622260 66622357 -95977573 + (TATATG)n Simple_repeat Simple_repeat 4 99 0 182 204 0 20 chrX 66622367 66622416 -95977514 + GA-rich Low_complexity Low_complexity 4 51 0 401 192 83 8 chrX 66622420 66622540 -95977390 + L1MC4 LINE L1 7914 8042 0 1969 121 30 24 chrX 66622751 66623082 -95976848 - MER44D DNA MER2_type -3 606 4 290 278 56 0 chrX 66623565 66623637 -95976293 - MIR SINE MIR -3 259 184 905 298 67 28 chrX 66623807 66624016 -95975914 - L1MC/D LINE L1 -752 5788 5589 2451 57 0 38 chrX 66624016 66624333 -95975597 - AluY SINE Alu -6 305 1 905 298 67 28 chrX 66624333 66624756 -95975174 - L1MC/D LINE L1 -951 5589 5184 273 109 0 0 chrX 66624756 66624802 -95975128 + (TA)n Simple_repeat Simple_repeat 2 47 0 2058 106 28 0 chrX 66624802 66625086 -95974844 - AluSx SINE Alu -20 292 1 905 298 67 28 chrX 66625086 66625180 -95974750 - L1MC/D LINE L1 -1095 5445 5356 358 261 134 36 chrX 66625282 66625558 -95974372 - L1MC/D LINE L1 -1446 5094 4792 4185 205 107 77 chrX 66625688 66626242 -95973688 - L1MDa LINE L1 -3789 2751 2215 1620 105 17 17 chrX 66626242 66626481 -95973449 + AluSg/x SINE Alu 73 311 -1 4185 205 107 77 chrX 66626481 66628060 -95971870 - L1MDa LINE L1 -4325 2215 18 307 300 44 62 chrX 66628393 66628890 -95971040 - L1ME LINE L1 -3528 2552 2065 407 212 82 35 chrX 66628952 66629130 -95970800 + MIR SINE MIR 26 262 0 1351 191 27 99 chrX 66629365 66629737 -95970193 + MLT1A1 LTR MaLR 1 345 -20 270 382 44 22 chrX 66629931 66630159 -95969771 + L2 LINE L2 2703 2935 -379 569 246 15 15 chrX 66631127 66631261 -95968669 + L2 LINE L2 3180 3313 0 281 335 125 5 chrX 66631673 66631876 -95968054 - MIR SINE MIR 0 262 37 209 234 16 0 chrX 66632655 66632719 -95967211 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 228 267 27 0 chrX 66632722 66632797 -95967133 + HsTC2 DNA Tc2 1 77 -1821 3428 137 47 32 chrX 66633252 66633908 -95966022 - L1MB3 LINE L1 -14 6169 5504 2427 210 14 16 chrX 66633911 66634472 -95965458 - L1MB3 LINE L1 -1464 4682 4121 641 194 73 0 chrX 66634472 66634596 -95965334 + FLAM_A SINE Alu 1 133 0 2427 210 14 16 chrX 66634596 66634614 -95965316 - L1MB3 LINE L1 -2025 4121 4104 22 0 0 0 chrX 66634645 66634667 -95965263 + AT_rich Low_complexity Low_complexity 1 22 0 237 219 62 16 chrX 66634738 66634802 -95965128 - L1ME LINE L1 -5471 599 533 581 269 91 69 chrX 66635345 66635456 -95964474 - L1ME LINE L1 -373 5748 5641 2152 105 6 26 chrX 66635456 66635769 -95964161 + AluSq SINE Alu 1 307 -6 581 269 91 69 chrX 66635769 66636007 -95963923 - L1ME LINE L1 -480 5641 5391 288 302 91 21 chrX 66636159 66636579 -95963351 + L1M4 LINE L1 4900 5348 -798 436 215 62 35 chrX 66636783 66636927 -95963003 + L1ME4a LINE L1 5967 6114 -7 22 35 0 0 chrX 66637144 66637173 -95962757 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrX 66637803 66637827 -95962103 + AT_rich Low_complexity Low_complexity 1 24 0 371 248 0 69 chrX 66638151 66638252 -95961678 + L2 LINE L2 3178 3271 -1 291 157 0 0 chrX 66639441 66639492 -95960438 + (CA)n Simple_repeat Simple_repeat 2 52 0 1959 184 121 28 chrX 66639573 66640035 -95959895 - MLT1D LTR MaLR 0 505 1 26 64 0 0 chrX 66640115 66640162 -95959768 + AT_rich Low_complexity Low_complexity 1 47 0 221 190 86 0 chrX 66641156 66641214 -95958716 - L2 LINE L2 -1059 2255 2193 540 318 31 97 chrX 66641856 66642246 -95957684 - L2 LINE L2 0 3272 2909 227 300 33 0 chrX 66642567 66642627 -95957303 - L2 LINE L2 -8 3305 3244 847 302 124 61 chrX 66642667 66643053 -95956877 - L2 LINE L2 -260 3012 2652 2279 91 7 3 chrX 66643053 66643349 -95956581 + AluSx SINE Alu 1 297 -15 847 302 124 61 chrX 66643349 66643822 -95956108 - L2 LINE L2 -620 2652 2086 217 279 8 47 chrX 66643829 66643958 -95955972 - L2 LINE L2 -1877 1437 1314 194 323 108 23 chrX 66645495 66645625 -95954305 - L2 LINE L2 -815 2499 2359 181 359 29 29 chrX 66645876 66645916 -95954014 - L2 LINE L2 -1142 2172 2133 2358 88 0 0 chrX 66645916 66646211 -95953719 + AluSg SINE Alu 1 295 -15 181 359 29 29 chrX 66646211 66646376 -95953554 - L2 LINE L2 -1180 2134 1967 1905 138 31 3 chrX 66646928 66647218 -95952712 - AluJo SINE Alu -14 298 1 2410 74 3 16 chrX 66647459 66647790 -95952140 + AluSp SINE Alu 1 313 0 493 175 204 29 chrX 66649005 66649142 -95950788 - MER5A DNA MER1_type 0 189 29 509 294 78 17 chrX 66649866 66650097 -95949833 - MIR SINE MIR -13 249 5 2765 7 0 0 chrX 66651002 66651301 -95948629 - AluYa5 SINE Alu -12 299 1 1860 137 7 29 chrX 66651332 66651638 -95948292 + AluJo SINE Alu 3 301 -11 2573 31 7 0 chrX 66651831 66652124 -95947806 - AluY SINE Alu -16 295 1 180 351 0 11 chrX 66652692 66652786 -95947144 - L2 LINE L2 -955 2359 2267 526 190 33 8 chrX 66653431 66653552 -95946378 - L1MC4a LINE L1 -568 7240 7117 6802 198 160 30 chrX 66654216 66654382 -95945548 - L1MD3 LINE L1 0 7995 7852 2133 126 7 3 chrX 66654382 66654683 -95945247 + AluSx SINE Alu 1 302 -10 6802 198 160 30 chrX 66654683 66655721 -95944209 - L1MD3 LINE L1 -143 7852 6951 237 83 0 0 chrX 66655721 66655757 -95944173 + (CA)n Simple_repeat Simple_repeat 2 37 0 6802 198 160 30 chrX 66655757 66655966 -95943964 - L1MD3 LINE L1 -1044 6951 6771 1092 205 67 0 chrX 66655966 66656176 -95943754 - MER58A DNA MER1_type 0 224 1 6802 198 160 30 chrX 66656176 66656657 -95943273 - L1MD3 LINE L1 -1224 6771 5852 7636 188 63 26 chrX 66657979 66661893 -95938037 + L1M2c LINE L1 14 4442 -2346 1405 208 35 0 chrX 66661905 66662193 -95937737 - L1ME2 LINE L1 -334 5830 5533 469 89 16 0 chrX 66663910 66663984 -95935946 - L1MA8 LINE L1 -313 5978 5902 698 241 241 12 chrX 66664029 66664374 -95935556 - L1ME4a LINE L1 -5 6116 5693 258 262 214 0 chrX 66664378 66664462 -95935468 + L2 LINE L2 3191 3292 -21 547 288 109 17 chrX 66664482 66664784 -95935146 - L1ME4a LINE L1 -436 5685 5356 330 226 0 113 chrX 66664790 66664896 -95935034 - L2 LINE L2 -194 3078 2985 2297 224 132 16 chrX 66664927 66665542 -95934388 - MST-int LTR MaLR 0 1651 966 207 0 0 0 chrX 66665559 66665582 -95934348 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7398 34 19 0 chrX 66665587 66666646 -95933284 - L1PA4 LINE L1 -3 6152 5088 13409 25 0 0 chrX 66666647 66668227 -95931703 + L1PA4 LINE L1 3497 5076 -1070 1130 247 79 32 chrX 66668233 66668573 -95931357 - MST-int LTR MaLR -692 959 604 1997 134 33 27 chrX 66668579 66668915 -95931015 - MSTC LTR MaLR -90 338 1 3533 168 34 39 chrX 66668915 66669658 -95930272 + L1MC4 LINE L1 7304 8042 0 7078 21 0 1 chrX 66670013 66670834 -95929096 - L1PA4 LINE L1 -4 6151 5332 275 305 167 25 chrX 66670851 66671090 -95928840 + L1MC/D LINE L1 5604 5876 -1932 2139 110 0 14 chrX 66671106 66671398 -95928532 + AluSx SINE Alu 1 288 -24 275 34 34 51 chrX 66671411 66671470 -95928460 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 278 285 72 40 chrX 66671506 66671783 -95928147 - L1MEc LINE L1 -3909 2487 2202 207 0 0 0 chrX 66671859 66671882 -95928048 + (ATG)n Simple_repeat Simple_repeat 2 24 0 196 310 62 35 chrX 66671994 66672107 -95927823 - L2 LINE L2 -938 2376 2261 698 228 203 15 chrX 66672744 66672941 -95926989 - MIR SINE MIR -14 248 15 5026 217 39 25 chrX 66672993 66673786 -95926144 - L1MC4a LINE L1 0 7808 7027 216 67 0 0 chrX 66673786 66673816 -95926114 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 5026 217 39 25 chrX 66673816 66673974 -95925956 - L1MC4a LINE L1 -781 7027 6873 1371 199 43 29 chrX 66673974 66674278 -95925652 + AluJb SINE Alu 1 308 0 5026 217 39 25 chrX 66674278 66674508 -95925422 - L1MC4a LINE L1 -935 6873 6609 5584 254 48 10 chrX 66674870 66676218 -95923712 + L1MEc LINE L1 35 1456 -4940 2391 80 3 10 chrX 66676218 66676518 -95923412 - AluSp SINE Alu -15 298 1 5584 254 48 10 chrX 66676518 66676803 -95923127 + L1MEc LINE L1 1456 1729 -4667 21 36 0 0 chrX 66677014 66677042 -95922888 + GC_rich Low_complexity Low_complexity 1 28 0 428 0 0 0 chrX 66677093 66677143 -95922787 + SVA Other Other 393 442 -944 5439 28 58 11 chrX 66677244 66677881 -95922049 + SVA Other Other 720 1386 0 348 241 11 0 chrX 66677889 66677976 -95921954 + L1MEc LINE L1 1713 1800 -4596 1818 161 0 0 chrX 66678089 66678356 -95921574 + AluJo SINE Alu 1 267 -45 1834 206 49 4 chrX 66678412 66678863 -95921067 - L1ME1 LINE L1 -3 6163 5693 198 195 65 39 chrX 66678977 66679054 -95920876 + MIR SINE MIR 157 235 -27 451 279 143 14 chrX 66679996 66680136 -95919794 - MIR SINE MIR -51 211 54 300 250 27 0 chrX 66680315 66680427 -95919503 + L1ME4a LINE L1 5996 6110 -11 593 248 150 7 chrX 66681314 66681600 -95918330 - L1MC4a LINE L1 -1882 5926 5600 354 280 75 10 chrX 66681612 66681812 -95918118 - L1MC4 LINE L1 -1 8041 7829 * 538 278 47 40 chrX 66681807 66682084 -95917846 - L1MC4a LINE L1 -2202 5606 5328 199 349 68 20 chrX 66682404 66682550 -95917380 + L2 LINE L2 2907 3059 -213 192 40 0 0 chrX 66682576 66682601 -95917329 + (TG)n Simple_repeat Simple_repeat 2 26 0 2240 101 0 7 chrX 66682763 66683060 -95916870 - AluSg SINE Alu -15 295 1 323 376 39 6 chrX 66683407 66683585 -95916345 + L2 LINE L2 2876 3059 -213 3984 163 24 50 chrX 66684137 66685257 -95914673 - L1MB8 LINE L1 -55 6934 5844 1745 137 66 47 chrX 66685257 66685622 -95914308 + MLT1B LTR MaLR 1 372 -18 7724 208 52 18 chrX 66685630 66685696 -95914234 - L1MB8 LINE L1 -1110 5847 5785 2351 105 0 0 chrX 66685696 66686001 -95913929 - AluSx SINE Alu -7 305 1 7724 208 52 18 chrX 66686001 66688200 -95911730 - L1MB8 LINE L1 -1172 5785 3503 3352 233 76 4 chrX 66688199 66689010 -95910920 - L1MB8 LINE L1 -5979 880 11 * 191 353 49 10 chrX 66689180 66689282 -95910648 + L2 LINE L2 2601 2706 -608 183 40 0 0 chrX 66689626 66689651 -95910279 + L2 LINE L2 3286 3310 -3 22 0 0 0 chrX 66690506 66690528 -95909402 + AT_rich Low_complexity Low_complexity 1 22 0 233 133 22 22 chrX 66691333 66691378 -95908552 + MER4A LTR ERV1 54 98 -566 1651 135 14 44 chrX 66691378 66691734 -95908196 + MER4A LTR ERV1 261 664 0 2792 105 129 29 chrX 66691737 66692263 -95907667 + MER4A-int LTR ERV1 1 579 -6019 1326 62 42 174 chrX 66692270 66692636 -95907294 + MER4A-int LTR ERV1 504 775 -4240 2461 61 0 0 chrX 66692636 66692930 -95907000 + AluY SINE Alu 1 294 -17 1326 62 42 174 chrX 66692930 66692958 -95906972 + MER4A-int LTR ERV1 775 805 -4210 * 3568 80 89 22 chrX 66692955 66693604 -95906326 + MER4A-int LTR ERV1 1803 2495 -4103 1168 163 80 4 chrX 66693604 66693843 -95906087 - LTR8 LTR ERV1 -434 257 1 1714 76 85 6 chrX 66693843 66694159 -95905771 + MER4A-int LTR ERV1 2737 3077 -3521 2360 72 10 19 chrX 66694159 66694466 -95905464 + AluSc SINE Alu 1 304 -5 14802 98 56 33 chrX 66694499 66696372 -95903558 + MER4A-int LTR ERV1 3918 5747 -851 2269 100 0 0 chrX 66696372 66696662 -95903268 + AluSg SINE Alu 1 290 -20 14802 98 56 33 chrX 66696662 66697100 -95902830 + MER4A-int LTR ERV1 5747 6297 -301 2211 97 3 7 chrX 66697100 66697389 -95902541 + AluSx SINE Alu 1 288 -24 14802 98 56 33 chrX 66697389 66697696 -95902234 + MER4A-int LTR ERV1 6297 6596 -2 264 97 375 14 chrX 66697704 66697776 -95902154 + MER4A LTR ERV1 1 98 -566 1667 126 3 64 chrX 66697776 66698142 -95901788 + MER4A LTR ERV1 261 662 -2 1794 147 13 33 chrX 66698329 66698629 -95901301 + AluJo SINE Alu 1 294 -18 221 264 56 14 chrX 66698726 66698798 -95901132 + MIR SINE MIR 67 141 -67 359 271 69 0 chrX 66698926 66699149 -95900781 + L1ME LINE L1 5198 5443 -727 687 233 70 119 chrX 66699150 66699493 -95900437 + MER46C DNA MER2_type 1 326 -12 207 100 0 0 chrX 66699496 66699526 -95900404 + (TG)n Simple_repeat Simple_repeat 1 30 0 1665 159 40 27 chrX 66699528 66699824 -95900106 - AluJb SINE Alu -12 300 1 218 410 0 0 chrX 66702393 66702454 -95897476 + L2 LINE L2 3117 3177 -95 426 214 107 30 chrX 66702522 66702563 -95897367 + L1MC4 LINE L1 7862 7898 -144 333 0 0 0 chrX 66702563 66702600 -95897330 + (TG)n Simple_repeat Simple_repeat 1 37 0 426 214 107 30 chrX 66702600 66702726 -95897204 + L1MC4 LINE L1 7898 8042 0 287 231 118 21 chrX 66703135 66703277 -95896653 + MIR SINE MIR 104 262 0 333 372 23 33 chrX 66703286 66703501 -95896429 - L2 LINE L2 -407 2907 2695 340 178 148 20 chrX 66703718 66703819 -95896111 - MER103 DNA DNA -44 122 9 274 370 41 36 chrX 66703962 66704181 -95895749 - L2 LINE L2 -961 2353 2134 476 225 51 62 chrX 66704548 66704691 -95895239 - MER5B DNA MER1_type -1 177 35 2255 111 3 10 chrX 66704691 66704998 -95894932 + AluSx SINE Alu 1 305 -7 476 225 51 62 chrX 66704998 66705032 -95894898 - MER5B DNA MER1_type -143 35 2 261 270 27 0 chrX 66705043 66705117 -95894813 + MER58A DNA MER1_type 26 101 -6 1227 209 4 4 chrX 66705122 66705356 -95894574 - MER8 DNA MER2_type -5 234 1 329 221 15 0 chrX 66705356 66705423 -95894507 + MER58A DNA MER1_type 100 167 0 2788 13 0 0 chrX 66705744 66706086 -95893844 - AluY SINE Alu 0 342 1 2373 71 0 3 chrX 66706388 66706684 -95893246 + AluSc SINE Alu 1 295 -14 1477 122 42 21 chrX 66708036 66708322 -95891608 - L1MA9 LINE L1 -3 6309 6018 417 70 0 0 chrX 66708596 66708653 -95891277 + (CA)n Simple_repeat Simple_repeat 1 57 0 2372 85 3 0 chrX 66709855 66710160 -95889770 + AluSx SINE Alu 1 306 -6 2119 91 0 53 chrX 66710180 66710498 -95889432 + AluSq SINE Alu 1 301 -12 1788 70 0 9 chrX 66711127 66711356 -95888574 - AluSg/x SINE Alu -10 300 74 33 43 0 0 chrX 66711513 66711560 -95888370 + AT_rich Low_complexity Low_complexity 1 47 0 313 185 108 23 chrX 66711560 66711690 -95888240 - L1ME4a LINE L1 -13 6108 5968 285 237 0 0 chrX 66712088 66712147 -95887783 - MIR SINE MIR -84 178 120 479 269 147 65 chrX 66712753 66713106 -95886824 - L1MC4a LINE L1 -1761 6047 5666 271 231 34 93 chrX 66713246 66713274 -95886656 - L1MC4a LINE L1 -776 5370 5342 3190 185 11 0 chrX 66713274 66713825 -95886105 - MER41D LTR ERV1 0 557 1 271 231 34 93 chrX 66713825 66714064 -95885866 - L1MC4a LINE L1 -804 5342 5119 1480 215 67 38 chrX 66714087 66714534 -95885396 + MLT1C LTR MaLR 6 465 -2 1356 119 0 0 chrX 66714539 66714716 -95885214 + AluSg/x SINE Alu 106 282 -30 180 0 0 0 chrX 66714722 66714742 -95885188 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2373 46 3 0 chrX 66714906 66715237 -95884693 - AluY SINE Alu 0 332 1 480 312 119 22 chrX 66715357 66715394 -95884536 - L1MC4a LINE L1 -1497 4649 4617 1628 165 21 18 chrX 66715394 66715679 -95884251 - AluJo SINE Alu -24 288 3 480 312 119 22 chrX 66715679 66716590 -95883340 - L1MC4a LINE L1 -1529 4617 3590 1040 134 5 93 chrX 66716826 66717042 -95882888 - MER20 DNA MER1_type 0 219 23 323 304 16 16 chrX 66717105 66717230 -95882700 - L1MC4a LINE L1 -2838 3308 3184 3170 224 103 66 chrX 66717281 66717590 -95882340 - L1MC5 LINE L1 -45 7985 7689 387 60 0 0 chrX 66717590 66717640 -95882290 + (TG)n Simple_repeat Simple_repeat 1 50 0 * 498 17 0 0 chrX 66717639 66717698 -95882232 + (GA)n Simple_repeat Simple_repeat 1 59 0 3170 224 103 66 chrX 66717640 66718983 -95880947 - L1MC5 LINE L1 -341 7689 6256 1487 115 41 4 chrX 66718983 66719227 -95880703 - L1MA3 LINE L1 0 6305 6053 3170 224 103 66 chrX 66719227 66719796 -95880134 - L1MC5 LINE L1 -1774 6256 5710 448 263 71 49 chrX 66719797 66720021 -95879909 - L1MC5 LINE L1 -4133 2263 2035 323 345 50 0 chrX 66720208 66720347 -95879583 - L1MC4a LINE L1 -1643 6165 6020 1764 125 3 57 chrX 66720366 66720691 -95879239 - AluSc SINE Alu 0 309 1 1028 266 73 57 chrX 66720708 66721058 -95878872 - L1MC4a LINE L1 -1851 5957 5595 1083 201 9 5 chrX 66721058 66721272 -95878658 - U3 snRNA snRNA 0 217 3 1028 266 73 57 chrX 66721272 66721413 -95878517 - L1MC4a LINE L1 -2213 5595 5458 261 0 0 0 chrX 66721424 66721453 -95878477 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 253 294 71 32 chrX 66723744 66724209 -95875721 - L1MC4a LINE L1 -1021 5125 4788 2494 61 0 10 chrX 66724402 66724715 -95875215 - AluY SINE Alu -1 310 1 1817 87 0 50 chrX 66724727 66725004 -95874926 - L1PA11 LINE L1 0 6174 5912 1341 167 36 26 chrX 66725293 66725564 -95874366 + MSTB LTR MaLR 1 277 -149 1579 135 89 113 chrX 66725564 66726023 -95873907 + LTR7 LTR ERV1 1 448 -2 1341 167 36 26 chrX 66726023 66726175 -95873755 + MSTB LTR MaLR 277 426 0 1424 213 9 27 chrX 66726448 66726777 -95873153 + L1MD3 LINE L1 7668 7990 -5 231 273 0 0 chrX 66726829 66726873 -95873057 + L2 LINE L2 3136 3179 -93 404 287 52 9 chrX 66727222 66727337 -95872593 + MIR SINE MIR 16 135 -73 511 343 102 35 chrX 66727426 66727820 -95872110 + L2 LINE L2 2375 2794 -520 2731 247 25 88 chrX 66727975 66728092 -95871838 + L2 LINE L2 1894 2017 -1297 7164 97 6 9 chrX 66728092 66729064 -95870866 + LTR5 LTR ERVK 1 969 0 2731 247 25 88 chrX 66729064 66729376 -95870554 + L2 LINE L2 2017 2347 -967 313 149 0 0 chrX 66729376 66729423 -95870507 - Alu SINE Alu -251 48 2 2731 247 25 88 chrX 66729423 66729902 -95870028 + L2 LINE L2 2347 2789 -525 5621 170 19 5 chrX 66729914 66731690 -95868240 - L1PA16 LINE L1 0 6166 4366 1385 267 18 53 chrX 66731699 66732204 -95867726 + L2 LINE L2 2817 3303 -10 443 292 71 32 chrX 66732398 66732552 -95867378 + L2 LINE L2 3111 3270 -2 304 274 131 34 chrX 66732969 66733144 -95866786 - MIR SINE MIR -5 257 66 808 156 8 8 chrX 66733662 66733784 -95866146 - FLAM_C SINE Alu -20 123 2 3006 182 35 5 chrX 66733795 66734361 -95865569 - L1MB4 LINE L1 -4 6245 5663 349 219 24 0 chrX 66734365 66734447 -95865483 - L1MA7 LINE L1 -1 6290 6207 * 1462 203 66 45 chrX 66734446 66735103 -95864827 - L1MB4 LINE L1 -574 5669 5011 4212 251 24 35 chrX 66735179 66735616 -95864314 - L1MB4 LINE L1 -2589 3626 3185 990 168 6 6 chrX 66735616 66735777 -95864153 - U1 snRNA snRNA -4 161 1 4212 251 24 35 chrX 66735777 66736882 -95863048 - L1MB4 LINE L1 -3030 3185 2150 3156 289 46 15 chrX 66736859 66738045 -95861885 - L1MEc LINE L1 -4748 1648 426 * 774 196 87 27 chrX 66738205 66738389 -95861541 - MIR SINE MIR -37 225 31 192 322 96 17 chrX 66739764 66739879 -95860051 + L2 LINE L2 360 483 -2831 696 210 38 43 chrX 66739888 66740074 -95859856 + MIR SINE MIR 3 187 -75 2011 137 3 0 chrX 66740092 66740385 -95859545 + AluJo SINE Alu 1 294 -18 185 356 43 6 chrX 66740676 66740839 -95859091 - L2 LINE L2 -1021 2293 2125 200 163 23 0 chrX 66740983 66741026 -95858904 + CT-rich Low_complexity Low_complexity 5 48 0 201 132 0 0 chrX 66741067 66741105 -95858825 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 186 281 94 0 chrX 66741124 66741188 -95858742 - L2 LINE L2 -57 3215 3146 832 201 13 23 chrX 66741228 66741511 -95858419 - MER90 LTR ERV1 0 575 288 2761 170 4 37 chrX 66741511 66742341 -95857589 - L1P4 LINE L1 -626 5540 4736 4020 246 16 10 chrX 66742341 66743431 -95856499 + L1P LINE L1 1754 2850 -3296 591 348 16 31 chrX 66743550 66743935 -95855995 - MER89-int LTR ERV1 -302 6499 6121 2472 63 0 3 chrX 66744171 66744470 -95855460 - AluY SINE Alu -13 298 1 2210 120 10 0 chrX 66744750 66745058 -95854872 - AluSq SINE Alu -2 311 1 16314 75 8 8 chrX 66745073 66747950 -95851980 - L1PA6 LINE L1 -7 6147 3268 29 60 0 0 chrX 66747950 66748000 -95851930 + AT_rich Low_complexity Low_complexity 1 50 0 285 51 0 0 chrX 66748034 66748073 -95851857 + (CA)n Simple_repeat Simple_repeat 2 40 0 7980 32 0 0 chrX 66748150 66749305 -95850625 - L1PA4 LINE L1 -4 6151 4998 2961 90 2 15 chrX 66749305 66749760 -95850170 - L1PA6 LINE L1 -2877 3269 2821 7856 42 0 0 chrX 66749780 66750835 -95849095 - L1PA5 LINE L1 -5 6149 5096 1471 186 52 71 chrX 66751591 66751972 -95847958 + MLT1A2 LTR MaLR 1 374 0 340 346 44 7 chrX 66752036 66752172 -95847758 + MIR3 SINE MIR 45 185 -23 1078 67 0 0 chrX 66752660 66752794 -95847136 - L1PA4 LINE L1 -2 6153 6020 3312 44 2 2 chrX 66752800 66753208 -95846722 + L1P LINE L1 4326 4733 -1413 * 17578 137 14 18 chrX 66753206 66756045 -95843885 - L1P LINE L1 -3305 2841 13 1817 153 28 0 chrX 66756061 66756349 -95843581 - AluSx SINE Alu -16 296 1 2062 308 50 46 chrX 66756628 66757739 -95842191 - MER89-int LTR ERV1 -1627 3020 1905 4096 159 16 7 chrX 66759005 66759705 -95840225 + L1MA4A LINE L1 5591 6296 -7 1054 191 0 58 chrX 66759713 66759970 -95839960 + L1ME2 LINE L1 5040 5281 -865 4431 163 1 16 chrX 66760016 66760825 -95839105 - L1 LINE L1 -1768 4378 3582 6406 143 14 14 chrX 66761015 66761321 -95838609 + L1PB1 LINE L1 4094 4398 -1753 504 0 0 0 chrX 66761321 66761377 -95838553 + (TAAAA)n Simple_repeat Simple_repeat 2 57 0 6406 143 14 14 chrX 66761377 66763125 -95836805 + L1PB1 LINE L1 4398 6148 -3 180 0 0 0 chrX 66763804 66763824 -95836106 + (T)n Simple_repeat Simple_repeat 1 20 0 1605 221 24 43 chrX 66765470 66765891 -95834039 + L1ME2 LINE L1 5749 6161 -3 345 250 97 56 chrX 66765927 66766123 -95833807 - L1 LINE L1 -3807 2339 2136 255 310 40 10 chrX 66766391 66766491 -95833439 + L1M4 LINE L1 4745 4847 -1299 933 89 0 15 chrX 66766614 66766784 -95833146 + FLAM_C SINE Alu 1 168 0 296 289 61 26 chrX 66766969 66767164 -95832766 - L1MC/D LINE L1 -397 5765 5645 898 189 16 16 chrX 66767166 66767351 -95832579 + MER53 DNA DNA 1 185 -4 1431 116 0 0 chrX 66767575 66767773 -95832157 - AluSx SINE Alu -114 198 1 471 66 0 0 chrX 66767789 66767850 -95832080 - L1PA5 LINE L1 0 6154 6094 2341 94 0 7 chrX 66768481 66768790 -95831140 - AluSc SINE Alu -2 307 1 219 167 0 0 chrX 66768946 66768988 -95830942 + GA-rich Low_complexity Low_complexity 2 43 0 445 236 8 100 chrX 66769075 66769316 -95830614 - LTR41 LTR ERVL -6 767 549 452 280 0 14 chrX 66769612 66769755 -95830175 - LTR41 LTR ERVL -632 141 1 452 318 43 70 chrX 66769895 66770451 -95829479 + L1M4 LINE L1 4180 4720 -1426 2026 69 19 0 chrX 66770605 66770866 -95829064 + AluSq SINE Alu 20 285 -28 207 162 0 0 chrX 66770869 66770906 -95829024 + (CAA)n Simple_repeat Simple_repeat 1 37 0 182 243 176 0 chrX 66771626 66771700 -95828230 - MIR SINE MIR 0 262 176 960 75 0 0 chrX 66771842 66771976 -95827954 + (TCC)n Simple_repeat Simple_repeat 1 134 0 206 111 37 56 chrX 66772386 66772440 -95827490 + C-rich Low_complexity Low_complexity 1 53 0 664 196 35 145 chrX 66774021 66774332 -95825598 - L2 LINE L2 0 3272 2996 184 68 23 45 chrX 66775333 66775377 -95824553 + (TGG)n Simple_repeat Simple_repeat 1 43 0 415 200 0 56 chrX 66777891 66777981 -95821949 - MER81 DNA DNA -15 99 15 202 376 0 0 chrX 66778380 66778465 -95821465 + L3 LINE CR1 1418 1502 -75 323 267 38 9 chrX 66778628 66778733 -95821197 + L2 LINE L2 1773 1880 -1434 1034 211 73 58 chrX 66779480 66779945 -95819985 + MLT1B LTR MaLR 1 390 0 272 314 39 7 chrX 66780811 66780964 -95818966 - L1MC/D LINE L1 -1921 5887 5730 181 395 34 0 chrX 66782115 66782234 -95817696 - MIR3 SINE MIR -4 204 82 558 29 0 0 chrX 66782505 66782573 -95817357 + (TC)n Simple_repeat Simple_repeat 2 69 0 333 0 0 0 chrX 66782572 66782609 -95817321 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 190 298 92 30 chrX 66783111 66783242 -95816688 - L2 LINE L2 -5 3267 3129 273 269 0 0 chrX 66783327 66783394 -95816536 - MIR SINE MIR -64 144 78 425 191 9 0 chrX 66784131 66784246 -95815684 + GA-rich Low_complexity Low_complexity 3 118 0 384 330 70 0 chrX 66784525 66784725 -95815205 - MIR SINE MIR -12 250 37 1477 236 37 96 chrX 66784841 66785464 -95814466 - MLT1E LTR MaLR -7 586 1 249 300 0 42 chrX 66787513 66787633 -95812297 - L2 LINE L2 -1 3312 3198 293 232 92 60 chrX 66788885 66789110 -95810820 - L1MC/D LINE L1 -667 5495 5265 13756 173 23 18 chrX 66789530 66791628 -95808302 - L1MA6 LINE L1 -22 6482 4396 2121 112 47 49 chrX 66791628 66791993 -95807937 + THE1B LTR MaLR 1 364 0 13756 173 23 18 chrX 66791993 66792552 -95807378 - L1MA6 LINE L1 -2108 4396 3841 237 65 0 0 chrX 66792552 66792583 -95807347 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 13756 173 23 18 chrX 66792583 66793741 -95806189 - L1MA6 LINE L1 -2663 3841 2653 312 224 39 34 chrX 66793757 66793936 -95805994 + (TA)n Simple_repeat Simple_repeat 1 180 0 3156 249 31 54 chrX 66793940 66795849 -95804081 - L1MA6 LINE L1 -3691 2659 835 731 342 33 37 chrX 66796093 66796663 -95803267 - L1MA6 LINE L1 -4754 596 1 254 349 0 0 chrX 66798309 66798435 -95801495 + L2 LINE L2 2347 2472 -842 2291 164 17 29 chrX 66800065 66800481 -95799449 - MSTB2 LTR MaLR -8 449 39 1095 174 0 24 chrX 66803684 66803923 -95796007 + AluJb SINE Alu 83 316 0 3571 278 50 34 chrX 66804687 66806313 -95793617 - L1M4 LINE L1 -989 5157 3507 12764 102 23 5 chrX 66806483 66809106 -95790824 - L1PA8A LINE L1 -3 6128 3480 3582 205 10 17 chrX 66809113 66809933 -95789997 - L1MEc LINE L1 -2272 3943 3130 2207 87 23 3 chrX 66809942 66810242 -95789688 + AluSc SINE Alu 3 308 -1 633 238 118 79 chrX 66810261 66810778 -95789152 - L1MEc LINE L1 -4133 2263 1727 884 192 24 25 chrX 66810779 66811027 -95788903 - L1M LINE L1 -794 5352 5134 13025 170 42 38 chrX 66811028 66812779 -95787151 - L1M1 LINE L1 -743 5403 3673 381 43 0 0 chrX 66812779 66812826 -95787104 + (TG)n Simple_repeat Simple_repeat 2 48 0 13025 170 42 38 chrX 66812826 66813976 -95785954 - L1M1 LINE L1 -2473 3673 2529 6540 237 60 34 chrX 66813991 66815420 -95784510 - L1M4 LINE L1 -1649 4995 3605 2279 34 8 4 chrX 66815420 66815688 -95784242 - AluY SINE Alu -4 307 39 6540 237 60 34 chrX 66815688 66817273 -95782657 - L1M4 LINE L1 -3039 3605 2063 180 0 0 0 chrX 66817273 66817293 -95782637 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6540 237 60 34 chrX 66817293 66818939 -95780991 - L1M4 LINE L1 -4581 2063 7 444 309 126 9 chrX 66819855 66820078 -95779852 + MIR SINE MIR 6 254 -8 20044 84 4 3 chrX 66820123 66823646 -95776284 - L1PA7 LINE L1 0 6154 2630 10248 129 7 40 chrX 66823648 66826324 -95773606 - L1PA7 LINE L1 -3606 2540 12 787 333 78 28 chrX 66826941 66827400 -95772530 + L1M2 LINE L1 13 494 -6355 215 100 0 25 chrX 66827564 66827604 -95772326 + (AGGGGG)n Simple_repeat Simple_repeat 3 41 0 6113 166 15 27 chrX 66827604 66828368 -95771562 + L1MA5 LINE L1 3607 4353 -1793 3060 46 3 0 chrX 66828368 66828735 -95771195 + L1PA8 LINE L1 5805 6172 0 6113 166 15 27 chrX 66828735 66829166 -95770764 + L1MA5 LINE L1 4353 4788 -1358 6354 153 9 11 chrX 66829166 66830466 -95769464 + L1MA5 LINE L1 5000 6300 0 2363 110 19 51 chrX 66830474 66830884 -95769046 + L1MA7 LINE L1 5894 6290 -1 2415 207 70 43 chrX 66830890 66831143 -95768787 + L1MDa LINE L1 16 260 -6280 189 74 0 0 chrX 66831143 66831170 -95768760 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 2415 207 70 43 chrX 66831170 66831526 -95768404 + L1MDa LINE L1 260 642 -5898 1762 158 3 3 chrX 66831561 66831864 -95768066 + L1MA8 LINE L1 5547 5849 -442 2264 132 5 11 chrX 66831874 66832245 -95767685 + L1MA8 LINE L1 5923 6291 0 729 255 55 19 chrX 66832274 66832599 -95767331 + L1M4 LINE L1 2918 3254 -2892 1680 230 40 31 chrX 66832599 66833200 -95766730 - Charlie5 DNA MER1_type -1062 1562 915 246 32 0 0 chrX 66833200 66833231 -95766699 + (TG)n Simple_repeat Simple_repeat 2 32 0 1680 230 40 31 chrX 66833231 66833513 -95766417 - Charlie5 DNA MER1_type -1709 915 637 1842 275 49 45 chrX 66833530 66834381 -95765549 + L1MC4 LINE L1 7089 7943 -99 513 219 22 15 chrX 66834549 66834686 -95765244 + L1MC5 LINE L1 7752 7889 -72 732 206 16 52 chrX 66834692 66834763 -95765167 + MER5A DNA MER1_type 3 75 -114 2433 71 10 0 chrX 66834763 66835072 -95764858 + AluSp SINE Alu 1 312 -1 530 28 28 0 chrX 66835077 66835148 -95764782 + (CAAAG)n Simple_repeat Simple_repeat 2 74 0 732 206 16 52 chrX 66835148 66835264 -95764666 + MER5A DNA MER1_type 79 189 0 584 159 88 0 chrX 66835463 66835576 -95764354 + FLAM_C SINE Alu 1 123 -10 1287 128 15 15 chrX 66835615 66835818 -95764112 + AluJb SINE Alu 70 272 -40 591 184 13 20 chrX 66835871 66836023 -95763907 + GA-rich Low_complexity Low_complexity 3 153 0 524 118 25 25 chrX 66836299 66836418 -95763512 + GA-rich Low_complexity Low_complexity 2 120 0 322 327 0 0 chrX 66836452 66836556 -95763374 + L1M4 LINE L1 4044 4147 -1999 213 65 0 0 chrX 66836578 66836609 -95763321 + (A)n Simple_repeat Simple_repeat 1 31 0 554 285 27 65 chrX 66836784 66837264 -95762666 + L1M4 LINE L1 4386 4847 -1299 246 203 119 34 chrX 66837265 66837324 -95762606 - MER20 DNA MER1_type -151 68 5 202 279 15 15 chrX 66838218 66838286 -95761644 + L2 LINE L2 3246 3313 0 2067 60 96 14 chrX 66838296 66838407 -95761523 + AluSq SINE Alu 1 101 -212 2614 33 0 3 chrX 66838407 66838711 -95761219 + AluY SINE Alu 1 303 -8 2067 60 96 14 chrX 66838711 66838880 -95761050 + AluSq SINE Alu 101 304 -9 226 248 74 50 chrX 66840134 66840255 -95759675 + MIR SINE MIR 20 143 -65 582 261 19 13 chrX 66840547 66840704 -95759226 + MIR3 SINE MIR 46 203 -5 744 91 0 0 chrX 66840993 66841103 -95758827 + (GGA)n Simple_repeat Simple_repeat 1 110 0 327 286 197 6 chrX 66841137 66841315 -95758615 + MIR SINE MIR 50 261 -1 199 271 107 57 chrX 66842407 66842547 -95757383 - MIR3 SINE MIR -53 155 9 475 194 11 0 chrX 66843680 66843773 -95756157 + MLT1I LTR MaLR 310 403 -6 864 259 27 5 chrX 66843960 66844184 -95755746 - MER102b DNA MER1_type -17 324 96 249 289 60 0 chrX 66844440 66844523 -95755407 - MIR SINE MIR -80 182 95 1591 184 148 23 chrX 66845631 66846017 -95753913 + MER63B DNA MER1_type 1 434 -2 22 0 0 0 chrX 66846138 66846160 -95753770 + AT_rich Low_complexity Low_complexity 1 22 0 2265 109 3 0 chrX 66846776 66847069 -95752861 + AluSx SINE Alu 1 294 -18 570 262 13 0 chrX 66847070 66847219 -95752711 - L1MC4a LINE L1 -1943 5865 5715 1088 57 0 0 chrX 66847236 66847360 -95752570 - AluSq/x SINE Alu -189 124 1 950 295 32 34 chrX 66847361 66847829 -95752101 - L1MC4a LINE L1 -2085 5723 5257 534 313 32 74 chrX 66848154 66848534 -95751396 + L1M3d LINE L1 241 604 -5527 1406 253 30 24 chrX 66848631 66849090 -95750840 + L1M3d LINE L1 914 1375 -4766 9423 78 5 2 chrX 66849200 66851225 -95748705 + L1PA6 LINE L1 4113 6147 -7 2213 121 10 0 chrX 66851240 66851547 -95748383 + AluSq SINE Alu 1 310 -3 2499 63 0 3 chrX 66851827 66852126 -95747804 + AluY SINE Alu 1 298 -13 606 345 16 31 chrX 66852362 66852747 -95747183 + MER89-int LTR ERV1 6121 6499 -302 3996 246 16 10 chrX 66852866 66853956 -95745974 - L1P LINE L1 -3296 2850 1754 2750 170 4 35 chrX 66853956 66854785 -95745145 + L1P4 LINE L1 4736 5540 -626 837 201 13 23 chrX 66854785 66855068 -95744862 + MER90 LTR ERV1 288 575 0 201 132 0 0 chrX 66855191 66855229 -95744701 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 200 163 23 0 chrX 66855270 66855313 -95744617 + GA-rich Low_complexity Low_complexity 5 48 0 2032 137 3 0 chrX 66855911 66856204 -95743726 - AluJo SINE Alu -18 294 1 635 210 38 43 chrX 66856222 66856408 -95743522 - MIR SINE MIR -75 187 3 711 196 87 27 chrX 66857907 66858091 -95741839 + MIR SINE MIR 31 225 -37 3099 289 46 15 chrX 66858251 66859437 -95740493 + L1MEc LINE L1 426 1648 -4748 * 3208 252 22 18 chrX 66859414 66860458 -95739472 + L1MEc LINE L1 2150 3156 -3059 668 218 18 73 chrX 66860427 66860647 -95739283 + L1MB4 LINE L1 5462 5669 -574 * 421 146 24 0 chrX 66860646 66860728 -95739202 + L1MA7 LINE L1 6207 6290 -1 * 2707 183 32 6 chrX 66860733 66861262 -95738668 + L1MB4 LINE L1 5662 6204 -45 37289 93 10 15 chrX 66861273 66867464 -95732466 + L1PA6 LINE L1 11 6167 0 745 156 8 8 chrX 66867523 66867645 -95732285 + FLAM_C SINE Alu 2 123 -20 308 270 132 13 chrX 66868184 66868343 -95731587 + MIR SINE MIR 81 258 -4 2287 106 10 0 chrX 66868661 66868962 -95730968 - AluSg SINE Alu -6 304 1 421 274 72 33 chrX 66869071 66869224 -95730706 - L2 LINE L2 -2 3270 3112 1407 265 14 50 chrX 66869409 66869914 -95730016 - L2 LINE L2 -3 3310 2824 4459 170 28 5 chrX 66869924 66871511 -95728419 + L1PA16 LINE L1 4366 5986 -180 354 319 30 0 chrX 66871590 66871776 -95728154 + L1M4 LINE L1 4885 5075 -1071 1245 38 1 2 chrX 66871855 66872028 -95727902 + L1P3 LINE L1 5368 5539 -615 7532 194 12 4 chrX 66872028 66873460 -95726470 + L1P LINE L1 2251 3698 -2448 297 51 0 0 chrX 66873460 66873499 -95726431 + (CAA)n Simple_repeat Simple_repeat 2 40 0 7532 194 12 4 chrX 66873499 66873581 -95726349 + L1P LINE L1 3698 3778 -2368 4297 109 17 21 chrX 67073586 67074239 -95525691 - SVA Other Other -683 703 54 471 48 0 0 chrX 67074239 67074301 -95525629 + (GGGAGA)n Simple_repeat Simple_repeat 4 65 0 3856 237 57 28 chrX 67074303 67075767 -95524163 - L1M4 LINE L1 -2569 3813 2307 44384 48 2 2 chrX 67075776 67081927 -95518003 - L1PA3 LINE L1 0 6155 1 5602 156 25 3 chrX 67082130 67083098 -95516832 - L1MA3 LINE L1 0 6305 5317 * 30771 121 14 56 chrX 67083092 67089522 -95510408 - L1PA7 LINE L1 -4 6150 12 5156 208 29 3 chrX 67089535 67091021 -95508909 - L1M4 LINE L1 -816 5330 3784 38026 104 10 1 chrX 67091022 67096138 -95503792 + HERVL-A2 LTR ERVL 491 5654 0 1990 166 62 31 chrX 67096138 67096672 -95503258 + MLT2A2 LTR ERVL 1 554 0 531 329 43 43 chrX 67096740 67097160 -95502770 - MER110-int LTR ERV1 -2086 2561 2142 310 265 62 82 chrX 67097750 67098058 -95501872 - MER110-int LTR ERV1 -2895 5118 4561 439 313 70 22 chrX 67098890 67099120 -95500810 - MER110-int LTR ERV1 -4078 569 329 2494 204 80 11 chrX 67099149 67099674 -95500256 - ERVL-B2 LTR ERVL -5201 563 3 2952 175 58 2 chrX 67099679 67100165 -95499765 - MLT2B2 LTR ERVL -2 513 1 2801 255 33 1 chrX 67100165 67101009 -95498921 + L1MB3 LINE L1 3042 3912 -2234 2222 146 107 3 chrX 67101015 67101398 -95498532 + MSTA LTR MaLR 6 428 0 1018 228 43 11 chrX 67101398 67101674 -95498256 + L1MB3 LINE L1 3908 4192 -1954 241 231 123 0 chrX 67101700 67101765 -95498165 + L1MB3 LINE L1 4154 4226 -1920 * 7609 25 0 3 chrX 67101763 67102644 -95497286 - L1PA2 LINE L1 0 6155 5278 3401 231 61 8 chrX 67102640 67103725 -95496205 + L1MB3 LINE L1 4217 5323 -823 * 44715 43 2 1 chrX 67103755 67109909 -95490021 + L1PA3 LINE L1 1 6155 0 3756 199 20 25 chrX 67109876 67110084 -95489846 + L1MB3 LINE L1 5280 5488 -695 * 333 0 0 0 chrX 67110084 67110121 -95489809 + (CA)n Simple_repeat Simple_repeat 2 38 0 3756 199 20 25 chrX 67110121 67110726 -95489204 + L1MB3 LINE L1 5488 6089 -94 612 232 7 7 chrX 67110760 67110902 -95489028 - L1PA13 LINE L1 -6022 765 624 * 2567 176 0 2 chrX 67110896 67111311 -95488619 - L1PA13 LINE L1 -6373 414 1 2653 181 4 0 chrX 67111319 67111800 -95488130 - L1M2 LINE L1 -4392 2457 1975 * 4783 238 45 7 chrX 67111794 67112851 -95487079 - L1M2 LINE L1 -5752 1097 1 2456 261 30 6 chrX 67112873 67113944 -95485986 - L1MDa LINE L1 -3113 3427 2338 799 190 23 6 chrX 67113961 67114135 -95485795 - L1MB4 LINE L1 -6 6174 5998 5601 236 43 85 chrX 67114153 67117941 -95481989 + L1MA7 LINE L1 22 3969 -2381 2318 106 0 0 chrX 67117941 67118243 -95481687 + AluSx SINE Alu 1 302 -10 2311 102 0 3 chrX 67118243 67118538 -95481392 + AluSg SINE Alu 1 294 -16 5601 236 43 85 chrX 67118538 67118757 -95481173 + L1MA7 LINE L1 3968 3495 -2855 6436 71 7 294 chrX 67118757 67120696 -95479234 + SVA Other Other 3 1386 0 5601 236 43 85 chrX 67120696 67121069 -95478861 + L1MA7 LINE L1 3494 3881 -2469 935 205 88 24 chrX 67121076 67121368 -95478562 - MSTC LTR MaLR -61 313 19 7599 176 40 28 chrX 67121371 67121866 -95478064 + L1MA7 LINE L1 3948 4435 -2060 2539 178 41 5 chrX 67121866 67122277 -95477653 + MSTB LTR MaLR 1 426 0 7599 176 40 28 chrX 67122277 67124296 -95475634 + L1MA7 LINE L1 4435 6464 -31 418 247 65 0 chrX 67124300 67124393 -95475537 + MER8 DNA MER2_type 125 223 -16 * 1587 169 125 25 chrX 67124390 67124807 -95475123 - MLT2A1 LTR ERVL -96 458 1 414 288 28 17 chrX 67125374 67125555 -95474375 + MER4A-int LTR ERV1 5587 5769 -1353 623 313 21 9 chrX 67126116 67126408 -95473522 + MER4A-int LTR ERV1 6404 7309 -447 694 247 21 5 chrX 67126739 67126929 -95473001 + MER4A-int LTR ERV1 6398 6590 -8 1074 163 9 160 chrX 67126940 67127377 -95472553 + MER4A LTR ERV1 1 217 -248 1132 180 65 8 chrX 67127397 67127642 -95472288 + MSTD-int LTR MaLR 1471 1729 -6 2297 170 0 10 chrX 67127649 67128044 -95471886 + MSTD LTR MaLR 6 396 0 8015 153 33 20 chrX 67128044 67129491 -95470439 + ERVL LTR ERVL 1562 3027 -2737 194 0 39 0 chrX 67129505 67129531 -95470399 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7848 17 0 0 chrX 67129547 67130622 -95469308 - L1PA2 LINE L1 -3 6152 5078 13247 28 0 0 chrX 67130622 67132257 -95467673 + L1PA2 LINE L1 3442 5076 -1070 3920 120 22 7 chrX 67132258 67132848 -95467082 + ERVL LTR ERVL 3016 3614 -2150 601 107 137 15 chrX 67132848 67132979 -95466951 + MLT2B2 LTR ERVL 369 515 0 416 91 15 0 chrX 67133721 67133787 -95466143 + (TA)n Simple_repeat Simple_repeat 2 68 0 25 90 0 0 chrX 67133880 67133947 -95465983 + AT_rich Low_complexity Low_complexity 1 67 0 22 70 0 0 chrX 67134249 67134292 -95465638 + AT_rich Low_complexity Low_complexity 1 43 0 343 259 135 38 chrX 67134294 67134634 -95465296 + L1ME LINE L1 5425 5797 -324 294 148 0 0 chrX 67136225 67136279 -95463651 + (CA)n Simple_repeat Simple_repeat 2 55 0 287 259 51 109 chrX 67136309 67136684 -95463246 + L1ME LINE L1 5509 5861 -260 295 259 33 71 chrX 67136935 67137147 -95462783 - HAL1 LINE L1 -59 2448 2245 9648 172 12 99 chrX 67137627 67140654 -95459276 - L1MA1 LINE L1 0 6302 3803 297 51 0 0 chrX 67140654 67140693 -95459237 + (TTG)n Simple_repeat Simple_repeat 2 40 0 9648 172 12 99 chrX 67140693 67142122 -95457808 - L1MA1 LINE L1 -2499 3803 2251 1167 21 0 0 chrX 67142122 67142263 -95457667 - L1P3 LINE L1 -615 5539 5399 302 316 30 0 chrX 67142374 67142542 -95457388 - L1M4 LINE L1 -1071 5075 4903 4130 170 28 5 chrX 67142639 67144226 -95455704 - L1PA16 LINE L1 -180 5986 4366 1591 263 14 50 chrX 67144236 67144741 -95455189 + L2 LINE L2 2824 3310 -3 479 274 72 33 chrX 67144927 67145080 -95454850 + L2 LINE L2 3112 3270 -2 2248 113 10 0 chrX 67145189 67145490 -95454440 + AluSg SINE Alu 1 304 -6 368 270 132 13 chrX 67145808 67145967 -95453963 - MIR SINE MIR -4 258 81 5621 140 53 17 chrX 67146165 67147669 -95452261 + SVA Other Other 432 1382 -4 34 24 0 0 chrX 67147670 67147711 -95452219 + AT_rich Low_complexity Low_complexity 1 41 0 569 165 33 118 chrX 67147718 67147930 -95452000 + L1ME4a LINE L1 3562 3755 -2391 381 284 9 9 chrX 67147960 67148076 -95451854 + L1M3d LINE L1 39 154 -5737 4423 179 22 4 chrX 67148084 67149521 -95450409 + L1MB1 LINE L1 4706 6168 0 1851 172 27 25 chrX 67149531 67149937 -95449993 + L1MB4 LINE L1 5770 6176 -4 1492 268 21 8 chrX 67149948 67150429 -95449501 + L1ME4a LINE L1 3742 4228 -1918 * 5406 162 39 9 chrX 67150425 67151415 -95448515 - L1MA9 LINE L1 0 6312 5262 201 74 0 0 chrX 67151415 67151442 -95448488 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5406 162 39 9 chrX 67151442 67151980 -95447950 - L1MA9 LINE L1 -1050 5262 4741 1410 211 52 2 chrX 67151977 67152385 -95447545 + L1ME4a LINE L1 4214 4641 -1505 * 363 312 91 40 chrX 67153437 67153713 -95446217 + L1ME4a LINE L1 5592 5881 -240 31 82 0 0 chrX 67153847 67153920 -95446010 + AT_rich Low_complexity Low_complexity 1 73 0 241 314 32 11 chrX 67154099 67154284 -95445646 + L1ME LINE L1 5592 5780 -341 221 250 0 0 chrX 67154290 67154342 -95445588 + (CATA)n Simple_repeat Simple_repeat 4 55 0 336 48 0 0 chrX 67154841 67154883 -95445047 + (CA)n Simple_repeat Simple_repeat 2 43 0 287 259 51 109 chrX 67154913 67155288 -95444642 + L1ME4a LINE L1 5509 5861 -260 241 228 33 33 chrX 67155417 67155509 -95444421 + L1ME4a LINE L1 5964 6055 -66 209 208 0 21 chrX 67155680 67155728 -95444202 + GA-rich Low_complexity Low_complexity 3 49 0 225 94 0 0 chrX 67155743 67155775 -95444155 + (GA)n Simple_repeat Simple_repeat 1 32 0 317 333 77 39 chrX 67156314 67156548 -95443382 - L1M2 LINE L1 -6080 769 527 291 279 9 54 chrX 67157251 67157435 -95442495 - L2 LINE L2 -189 3083 2912 780 300 153 33 chrX 67158971 67160081 -95439849 - L2 LINE L2 0 3313 2049 223 200 22 0 chrX 67160411 67160456 -95439474 + GA-rich Low_complexity Low_complexity 5 50 0 367 365 14 23 chrX 67160984 67161198 -95438732 + L1MC4a LINE L1 5676 5887 -1921 291 281 134 41 chrX 67161570 67161741 -95438189 + MIR SINE MIR 60 246 -16 303 275 31 65 chrX 67162552 67162781 -95437149 - HAL1 LINE L1 -42 2465 2245 695 196 71 13 chrX 67163163 67163388 -95436542 + L1MA8 LINE L1 6009 6246 -45 1425 270 17 4 chrX 67163442 67163908 -95436022 + L1M4 LINE L1 3840 4311 -1835 2052 122 0 11 chrX 67163908 67164194 -95435736 + AluSx SINE Alu 1 283 -29 954 209 45 0 chrX 67164266 67164534 -95435396 - L1M4 LINE L1 -1560 4822 4543 427 219 0 0 chrX 67164535 67164672 -95435258 + L1M4 LINE L1 4369 4505 -1641 1939 185 16 13 chrX 67164672 67165051 -95434879 - MER54A LTR ERVL -519 382 3 2855 234 47 15 chrX 67165054 67166015 -95433915 + L1M4 LINE L1 3662 4653 -1493 519 105 35 0 chrX 67166015 67166101 -95433829 + L1MB5 LINE L1 6078 6166 -8 1008 251 47 35 chrX 67166230 67166610 -95433320 - L1M4 LINE L1 -3364 3018 2631 2536 128 20 30 chrX 67166610 67167048 -95432882 + Tigger2a DNA MER2_type 1 434 0 1008 251 47 35 chrX 67167048 67167070 -95432860 - L1M4 LINE L1 -3751 2631 2611 553 259 51 17 chrX 67167130 67167676 -95432254 - L1M4 LINE L1 -3788 2594 2027 679 151 91 32 chrX 67167770 67167956 -95431974 + L1MC4 LINE L1 7836 8032 -10 5339 129 26 35 chrX 67167958 67168330 -95431600 - L1PB2 LINE L1 -2 6149 5775 351 0 0 0 chrX 67168330 67168369 -95431561 + (CA)n Simple_repeat Simple_repeat 2 40 0 5339 129 26 35 chrX 67168369 67169327 -95430603 - L1PB2 LINE L1 -376 5775 4838 1012 210 21 0 chrX 67169321 67169559 -95430371 + L1MB4 LINE L1 5901 6143 -37 * 23 33 0 0 chrX 67169629 67169659 -95430271 + AT_rich Low_complexity Low_complexity 1 30 0 782 96 0 8 chrX 67169987 67170112 -95429818 - L1M1 LINE L1 -4699 2866 2743 41158 48 2 1 chrX 67170146 67176293 -95423637 - L1PA4 LINE L1 -3 6152 1 13443 189 21 19 chrX 67176291 67178903 -95421027 - L1M1 LINE L1 -4796 2769 152 * 2471 156 29 2 chrX 67178903 67179320 -95420610 + MSTA LTR MaLR 1 428 0 13443 189 21 19 chrX 67179320 67179425 -95420505 - L1M1 LINE L1 -7413 152 49 3055 295 14 40 chrX 67231701 67232785 -95367145 - L1PA13 LINE L1 -5730 1057 2 1297 254 89 19 chrX 67232806 67233580 -95366350 - L1M4c LINE L1 -2882 4075 3248 3172 262 52 26 chrX 67233597 67235671 -95364259 - L1M4 LINE L1 -4520 2126 3 620 251 61 83 chrX 67235658 67236163 -95363767 - L1M4c LINE L1 -4710 2249 1756 * 23 0 0 0 chrX 67236164 67236187 -95363743 + AT_rich Low_complexity Low_complexity 1 23 0 203 246 23 23 chrX 67236586 67236716 -95363214 + (CACAA)n Simple_repeat Simple_repeat 1 130 0 205 254 17 35 chrX 67236761 67236934 -95362996 + (CAAA)n Simple_repeat Simple_repeat 4 173 0 32612 37 31 2 chrX 67237046 67241274 -95358656 - L1P LINE L1 -1783 4363 11 440 252 21 0 chrX 67241286 67241429 -95358501 - L1M4c LINE L1 -5088 1767 1622 * 26182 130 16 14 chrX 67241418 67242844 -95357086 - L1PA10 LINE L1 -8 6475 5054 197 40 20 60 chrX 67242844 67242894 -95357036 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 26182 130 16 14 chrX 67242894 67247473 -95352457 - L1PA10 LINE L1 -1429 5054 427 711 88 0 20 chrX 67247461 67247563 -95352367 - L1PA10 LINE L1 -6357 104 5 * 248 207 92 46 chrX 67247571 67247658 -95352272 - L1M4c LINE L1 -6758 101 11 10601 274 39 26 chrX 67247698 67251114 -95348816 + L1PA12 LINE L1 1 3004 -4580 1957 170 0 0 chrX 67251114 67251428 -95348502 + AluSx SINE Alu 1 314 0 10601 274 39 26 chrX 67251428 67254560 -95345370 + L1PA12 LINE L1 3004 6095 -1489 12691 203 29 16 chrX 67254563 67260286 -95339644 + L1PB1 LINE L1 1 5644 -1223 2299 107 0 0 chrX 67260286 67260586 -95339344 + AluY SINE Alu 1 300 -11 12691 203 29 16 chrX 67260586 67261046 -95338884 + L1PB1 LINE L1 5644 6096 -771 233 29 29 0 chrX 67261046 67261080 -95338850 + (TA)n Simple_repeat Simple_repeat 2 36 0 12691 203 29 16 chrX 67261080 67261465 -95338465 + L1PB1 LINE L1 6096 6867 0 300 234 75 21 chrX 67261592 67261686 -95338244 + L1 LINE L1 4616 4714 -1432 26765 123 7 8 chrX 67261786 67267160 -95332770 + L1PA7 LINE L1 786 6151 -3 2717 181 15 23 chrX 67267203 67267851 -95332079 + L1PA11 LINE L1 2827 3469 -2677 693 221 0 0 chrX 67267851 67267996 -95331934 + L1P LINE L1 4115 4259 -1887 10073 156 14 3 chrX 67267997 67268201 -95331729 + L1PA11 LINE L1 3476 3676 -2498 255 31 0 0 chrX 67268201 67268233 -95331697 + (CAA)n Simple_repeat Simple_repeat 3 34 0 10073 156 14 3 chrX 67268233 67270678 -95329252 + L1PA11 LINE L1 3676 6171 -3 3443 214 17 5 chrX 67270684 67271515 -95328415 - L1 LINE L1 -1812 4334 3494 591 199 30 0 chrX 67271525 67271656 -95328274 - L1PA16 LINE L1 -9 6157 6023 5091 128 11 10 chrX 67271662 67273468 -95326462 - L1PA8A LINE L1 0 6131 4328 1814 146 6 78 chrX 67273468 67273803 -95326127 + AluSx SINE Alu 1 311 -1 5091 128 11 10 chrX 67273803 67276555 -95323375 - L1PA8A LINE L1 -1803 4328 1496 26161 130 9 38 chrX 67276558 67282999 -95316931 + L1PA7 LINE L1 4 6153 -1 810 155 0 0 chrX 67282999 67283128 -95316802 - MER84 LTR ERVI -378 129 1 401 151 27 0 chrX 67283131 67283204 -95316726 - MER84 LTR ERVI -427 80 6 730 246 59 11 chrX 67283204 67283691 -95316239 - L1M4c LINE L1 -4191 2455 1853 12823 158 27 5 chrX 67284659 67287020 -95312910 + Tigger1 DNA MER2_type 6 2418 0 8474 241 15 12 chrX 67287060 67289826 -95310104 + L1PA15-16 LINE L1 2693 5466 -1383 * 9584 192 53 17 chrX 67289825 67292171 -95307759 + L1MA3 LINE L1 340 3456 -4109 2458 61 0 0 chrX 67292171 67292466 -95307464 - AluY SINE Alu -16 295 1 9584 192 53 17 chrX 67292466 67292586 -95307344 + L1MA3 LINE L1 3456 3570 -3995 888 203 0 14 chrX 67292586 67292803 -95307127 - L1M1 LINE L1 -4299 3266 3053 * 12897 190 37 10 chrX 67292782 67296206 -95303724 + L1MA3 LINE L1 3552 7067 -657 3643 139 6 55 chrX 67296227 67296748 -95303182 + L1MA3 LINE L1 7047 7525 -199 2330 77 0 0 chrX 67296748 67297033 -95302897 - AluY SINE Alu -26 285 1 3643 139 6 55 chrX 67297033 67297224 -95302706 + L1MA3 LINE L1 7525 7724 0 275 113 0 0 chrX 67297232 67297285 -95302645 + L1MB4 LINE L1 6128 6180 0 1909 228 42 80 chrX 67297318 67298381 -95301549 - L1M4c LINE L1 -4775 1871 833 286 171 13 26 chrX 67298406 67298482 -95301448 + GA-rich Low_complexity Low_complexity 1 75 0 1048 321 67 35 chrX 67298618 67299338 -95300592 - L1M4c LINE L1 -5798 744 2 1092 246 121 51 chrX 67299433 67299905 -95300025 - MLT1D LTR MaLR 0 505 1 370 251 45 95 chrX 67300555 67300734 -95299196 - MIR3 SINE MIR -14 194 25 2363 63 10 23 chrX 67300762 67301062 -95298868 - AluY SINE Alu -15 296 1 524 180 129 0 chrX 67301396 67301413 -95298517 - L1MA10 LINE L1 -1 6333 6317 355 268 89 24 chrX 67301413 67301581 -95298349 - L1ME1 LINE L1 -12 6154 5976 294 163 41 0 chrX 67302584 67302633 -95297297 + L2 LINE L2 3255 3305 -8 297 321 53 8 chrX 67303161 67303292 -95296638 + MIR SINE MIR 50 186 -76 335 234 117 54 chrX 67304888 67304999 -95294931 - MIR SINE MIR -50 212 95 26 30 0 0 chrX 67305225 67305258 -95294672 + AT_rich Low_complexity Low_complexity 1 33 0 240 272 75 5 chrX 67306195 67306302 -95293628 - MIR SINE MIR -53 155 34 192 77 0 0 chrX 67307037 67307063 -95292867 + (A)n Simple_repeat Simple_repeat 1 26 0 216 133 89 0 chrX 67309190 67309235 -95290695 - L2 LINE L2 0 3313 3265 560 186 24 32 chrX 67312593 67312717 -95287213 - L2 LINE L2 -4 3309 3187 474 274 62 20 chrX 67313200 67313346 -95286584 + MIR SINE MIR 84 235 -27 187 185 0 200 chrX 67313319 67313384 -95286546 + L2 LINE L2 3213 3264 -8 * 807 280 209 9 chrX 67313358 67314015 -95285915 - L2 LINE L2 -4 3309 2527 586 296 90 11 chrX 67314120 67314309 -95285621 - MIR SINE MIR -39 223 20 296 214 214 78 chrX 67314496 67314650 -95285280 - MIR3 SINE MIR -18 190 16 932 159 6 19 chrX 67314751 67314908 -95285022 - FRAM SINE Alu -11 155 1 207 319 89 30 chrX 67315833 67316002 -95283928 - MIR3 SINE MIR -27 181 3 * 291 322 16 8 chrX 67316002 67316092 -95283838 + MIR SINE MIR 108 198 -64 1330 248 26 18 chrX 67317236 67317737 -95282193 - L1MCa LINE L1 -3213 3213 2709 * 3497 31 0 0 chrX 67317730 67318178 -95281752 - L1PA4 LINE L1 -754 5392 4945 6357 29 7 0 chrX 67318178 67318936 -95280994 + L1PA4 LINE L1 5388 6150 -5 2171 255 85 39 chrX 67319766 67320120 -95279810 - L1MCa LINE L1 -3874 2733 2397 1539 218 46 3 chrX 67320120 67320468 -95279462 + MLT1A1 LTR MaLR 1 363 -2 2171 255 85 39 chrX 67320468 67320549 -95279381 - L1MCa LINE L1 -4210 2397 2321 2065 150 34 6 chrX 67320549 67320903 -95279027 + THE1B LTR MaLR 1 364 0 10382 116 38 1 chrX 67320903 67322426 -95277504 + THE1B-int LTR MaLR 1 1580 0 1983 168 28 11 chrX 67322426 67322784 -95277146 + THE1B LTR MaLR 1 364 0 2171 255 85 39 chrX 67322784 67322982 -95276948 - L1MCa LINE L1 -4286 2321 2134 180 0 0 0 chrX 67322982 67323002 -95276928 + (CA)n Simple_repeat Simple_repeat 1 20 0 2171 255 85 39 chrX 67323002 67323824 -95276106 - L1MCa LINE L1 -4473 2134 1035 942 225 106 50 chrX 67323832 67324436 -95275494 + L1MEc LINE L1 1835 2472 -3924 * 35103 49 4 1 chrX 67324435 67330559 -95269371 + L1PA4 LINE L1 4 6147 -8 5138 119 18 6 chrX 67330567 67331424 -95268506 + L1PA14 LINE L1 5293 6159 -2 636 217 7 0 chrX 67331417 67331569 -95268361 + L1MB8 LINE L1 5816 5968 -210 * 864 236 78 9 chrX 67331577 67331899 -95268031 + L1MEc LINE L1 2419 2762 -3453 * 16426 196 10 7 chrX 67331895 67336438 -95263492 - L1PA14 LINE L1 -144 6017 1464 7626 136 5 0 chrX 67336437 67337660 -95262270 + L1PA14 LINE L1 1672 2900 -4681 * 235 215 0 15 chrX 67337658 67337723 -95262207 - L1MCa LINE L1 -5377 1049 986 * 1082 215 25 0 chrX 67337719 67337961 -95261969 - L1MCa LINE L1 -6082 344 97 * 5186 104 8 1 chrX 67337952 67338720 -95261210 - L1PA10 LINE L1 -10 7596 6824 1696 88 12 0 chrX 67338723 67338974 -95260956 - L1PA10 LINE L1 -5260 2321 2068 1258 150 22 0 chrX 67338969 67339196 -95260734 - L1P LINE L1 -1756 5828 5597 * 1114 8 0 0 chrX 67339189 67339323 -95260607 - L1PA3 LINE L1 -634 5521 5388 * 5268 31 0 0 chrX 67339323 67339961 -95259969 + L1PA3 LINE L1 5538 6177 0 308 252 8 87 chrX 67340012 67340139 -95259791 - MIR3 SINE MIR -34 174 58 531 276 192 10 chrX 67340330 67340533 -95259397 - MIR SINE MIR -3 259 20 2081 204 29 5 chrX 67340791 67341207 -95258723 + MSTA LTR MaLR 3 428 0 8889 173 34 6 chrX 67341207 67342813 -95257117 + MSTA-int LTR MaLR 1 1651 0 2079 163 53 19 chrX 67342814 67342998 -95256932 + MSTA LTR MaLR 2 178 -250 1026 80 0 0 chrX 67342998 67343136 -95256794 + L1PA5 LINE L1 6013 6150 -4 2079 163 53 19 chrX 67343136 67343363 -95256567 + MSTA LTR MaLR 178 427 -1 424 213 0 142 chrX 67344045 67344200 -95255730 - MIR SINE MIR -56 152 20 1973 155 0 13 chrX 67344582 67344892 -95255038 + AluSx SINE Alu 1 306 -6 684 316 102 38 chrX 67345590 67345771 -95254159 - L2 LINE L2 -6 3307 3139 318 50 0 0 chrX 67345771 67345811 -95254119 + (TA)n Simple_repeat Simple_repeat 1 40 0 * 450 0 0 0 chrX 67345810 67345860 -95254070 + (GA)n Simple_repeat Simple_repeat 2 51 0 684 316 102 38 chrX 67345811 67346320 -95253610 - L2 LINE L2 -174 3139 2635 877 199 75 5 chrX 67346494 67346572 -95253358 + MER20 DNA MER1_type 5 76 -143 309 100 0 0 chrX 67346572 67346622 -95253308 + (TG)n Simple_repeat Simple_repeat 1 50 0 877 199 75 5 chrX 67346622 67346744 -95253186 + MER20 DNA MER1_type 76 219 0 294 290 130 19 chrX 67346887 67347049 -95252881 - MIR3 SINE MIR -15 193 14 180 298 0 0 chrX 67348150 67348197 -95251733 + L2 LINE L2 3267 3313 0 662 173 0 8 chrX 67348703 67348830 -95251100 - L1MA9 LINE L1 -52 6260 6135 451 205 0 68 chrX 67348831 67348948 -95250982 - L1M1 LINE L1 -6899 666 558 * 1592 233 31 0 chrX 67348946 67349392 -95250538 + L1 LINE L1 3274 3733 -2413 494 127 76 59 chrX 67349395 67349513 -95250417 + L1M1 LINE L1 3545 3664 -3901 * 6314 178 39 11 chrX 67349512 67351723 -95248207 - L1 LINE L1 -2894 4671 2405 29323 111 16 56 chrX 67351724 67358124 -95241806 - L1PA7 LINE L1 -4 6150 12 11407 187 33 14 chrX 67358134 67360413 -95239517 - L1 LINE L1 -5150 2415 93 432 309 68 6 chrX 67360417 67360579 -95239351 + L1PA13 LINE L1 1052 1223 -6351 395 280 0 0 chrX 67360865 67360965 -95238965 + L1PA13 LINE L1 2084 2183 -5398 368 170 138 11 chrX 67361277 67361371 -95238559 - L1PA15-16 LINE L1 -4118 2731 2626 180 0 0 0 chrX 67361716 67361736 -95238194 + (TTA)n Simple_repeat Simple_repeat 3 22 0 6804 68 2 0 chrX 67361736 67362935 -95236995 - L1PA7 LINE L1 -18 6136 4944 21 57 0 0 chrX 67363954 67363989 -95235941 + AT_rich Low_complexity Low_complexity 1 35 0 243 146 0 0 chrX 67364350 67364391 -95235539 + (TATG)n Simple_repeat Simple_repeat 4 44 0 22 56 0 0 chrX 67364611 67364647 -95235283 + AT_rich Low_complexity Low_complexity 1 36 0 1994 255 15 26 chrX 67364744 67365274 -95234656 + L1PA15 LINE L1 1 524 -6263 7203 256 66 21 chrX 67365558 67367674 -95232256 + L1PA15 LINE L1 695 3044 -3753 336 64 0 0 chrX 67367674 67367721 -95232209 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7203 256 66 21 chrX 67367721 67369308 -95230622 + L1PA15 LINE L1 3044 4559 -2238 2309 93 3 12 chrX 67369308 67369640 -95230290 - THE1C LTR MaLR -46 329 1 9240 121 11 40 chrX 67369656 67371185 -95228745 - THE1C-int LTR MaLR -96 1484 1 2503 124 3 11 chrX 67371185 67371563 -95228367 - THE1C LTR MaLR 0 375 1 4840 176 63 33 chrX 67371563 67373705 -95226225 + L1PA15 LINE L1 4559 6815 -1 238 213 0 0 chrX 67373739 67373800 -95226130 - L1MA8 LINE L1 -65 6226 6166 1283 135 82 65 chrX 67373807 67373998 -95225932 - L1MA5 LINE L1 0 6300 6099 2285 83 0 10 chrX 67373998 67374286 -95225644 - AluY SINE Alu -26 285 1 1283 135 82 65 chrX 67374286 67374434 -95225496 - L1MA5 LINE L1 -201 6099 5955 4614 155 14 22 chrX 67374434 67375466 -95224464 - L1MA8 LINE L1 -116 6175 5152 237 343 0 43 chrX 67376167 67376237 -95223693 + L3b LINE CR1 1509 1575 -8 211 263 253 42 chrX 67377806 67377901 -95222029 + MIR3 SINE MIR 42 156 -52 203 214 0 0 chrX 67378226 67378268 -95221662 + L3b LINE CR1 1229 1270 -313 201 348 24 27 chrX 67378390 67378484 -95221446 + MER5A DNA MER1_type 2 113 -76 294 164 0 0 chrX 67378628 67378683 -95221247 + MER53 DNA DNA 135 189 0 1403 247 73 82 chrX 67379144 67380052 -95219878 - L1M4 LINE L1 -797 5349 4450 1033 279 41 74 chrX 67380117 67380770 -95219160 - L1ME1 LINE L1 -7 6159 5530 4895 155 21 32 chrX 67380816 67381788 -95218142 - L1MA5 LINE L1 -2 6298 5338 3874 196 22 0 chrX 67382314 67383132 -95216798 - L1MA5 LINE L1 -788 5358 4523 3676 204 37 5 chrX 67383137 67383993 -95215937 - L1MA7 LINE L1 0 6291 5408 1447 165 4 11 chrX 67383993 67384258 -95215672 + L1PA15 LINE L1 5898 6162 -3 292 228 0 4 chrX 67384290 67384367 -95215563 - L1ME3 LINE L1 -47 6115 6050 9434 160 43 8 chrX 67384515 67385729 -95214201 + L1PBa LINE L1 904 2074 -4788 2321 95 0 0 chrX 67385729 67386024 -95213906 + AluY SINE Alu 1 295 -16 9434 160 43 8 chrX 67386024 67387652 -95212278 + L1PBa LINE L1 2074 4013 -2849 2593 149 38 0 chrX 67387656 67388080 -95211850 - L1P3 LINE L1 -5146 1315 876 21433 148 19 34 chrX 67388093 67390361 -95209569 + L1PB1 LINE L1 1145 3445 -2706 6722 71 4 4 chrX 67390361 67391509 -95208421 + L1PA6 LINE L1 5005 6152 -2 21433 148 19 34 chrX 67391509 67394330 -95205600 + L1PB1 LINE L1 3445 6150 -1 871 171 8 7 chrX 67394339 67394505 -95205425 + L1PA16 LINE L1 5750 5880 -271 3526 111 4 10 chrX 67394505 67395019 -95204911 + MER9 LTR ERVK 1 511 0 871 171 8 7 chrX 67395019 67395055 -95204875 + L1PA16 LINE L1 5880 5914 -237 26485 66 19 9 chrX 67395055 67395782 -95204148 + HERVK9 LTR ERVK 38 757 -5159 212 217 0 83 chrX 67395782 67395842 -95204088 + MER5B DNA MER1_type 55 109 -69 26485 66 19 9 chrX 67395842 67400811 -95199119 + HERVK9 LTR ERVK 757 5916 0 3497 121 2 4 chrX 67400811 67401323 -95198607 + MER9 LTR ERVK 1 511 0 483 213 0 0 chrX 67401324 67401418 -95198512 + L1PA16 LINE L1 5910 6003 -163 1358 131 30 5 chrX 67401423 67401622 -95198308 + AluSg/x SINE Alu 87 290 -20 1552 151 30 4 chrX 67401634 67401899 -95198031 + L1PA13 LINE L1 5889 6160 -3 3102 143 6 18 chrX 67401899 67402402 -95197528 + L1PA13 LINE L1 5606 6102 -61 13148 65 0 1 chrX 67402407 67404282 -95195648 - L1P2 LINE L1 -560 5594 3721 5623 164 6 30 chrX 67404280 67405038 -95194892 + L1PB1 LINE L1 4573 5347 -804 * 1583 147 4 0 chrX 67405038 67405270 -95194660 + AluSp SINE Alu 63 295 -18 5623 164 6 30 chrX 67405270 67405975 -95193955 + L1PB1 LINE L1 5347 6005 -146 2312 95 0 3 chrX 67405975 67406280 -95193650 + AluSq SINE Alu 1 304 -9 5623 164 6 30 chrX 67406280 67406423 -95193507 + L1PB1 LINE L1 6005 6150 -1 7010 205 57 37 chrX 67406500 67408262 -95191668 - L1 LINE L1 -866 6699 4885 216 0 0 0 chrX 67408262 67408286 -95191644 + (TTG)n Simple_repeat Simple_repeat 1 24 0 7010 205 57 37 chrX 67408286 67408636 -95191294 - L1 LINE L1 -2680 4885 4544 5758 103 4 9 chrX 67408621 67410119 -95189811 - L1PA8 LINE L1 -2 6485 5039 * 17167 155 10 22 chrX 67410113 67413542 -95186388 - L1PA8 LINE L1 -2395 4066 649 991 288 61 0 chrX 67413543 67413978 -95185952 - L1 LINE L1 -3574 3991 3530 * 40893 59 10 1 chrX 67413975 67420008 -95179922 + L1PA4 LINE L1 64 6149 -6 393 275 21 11 chrX 67420006 67420195 -95179735 - L1 LINE L1 -4014 3551 3361 * 1362 114 0 0 chrX 67420195 67420371 -95179559 - AluSg SINE Alu -130 180 5 6058 106 12 3 chrX 67420386 67421800 -95178130 - L1PA13 LINE L1 -6 6808 5386 424 116 0 0 chrX 67421800 67421869 -95178061 - Alu SINE Alu -1 310 242 8801 179 16 14 chrX 67421871 67423684 -95176246 - L1PA13 LINE L1 -1399 5398 3583 2434 130 14 6 chrX 67423686 67424040 -95175890 - THE1B LTR MaLR -2 362 6 7018 235 29 16 chrX 67424043 67424830 -95175100 - L1PA13 LINE L1 -3213 3584 2809 1876 179 0 0 chrX 67424830 67425126 -95174804 - AluSx SINE Alu -11 301 6 7018 235 29 16 chrX 67425126 67426245 -95173685 - L1PA13 LINE L1 -3988 2809 1653 5081 141 44 51 chrX 67426295 67426894 -95173036 - L1PB1 LINE L1 -1 6150 5548 2090 116 10 13 chrX 67426894 67427197 -95172733 - AluSg1 SINE Alu -7 302 1 5081 141 44 51 chrX 67427197 67427364 -95172566 - L1PB1 LINE L1 -603 5548 5381 669 86 0 0 chrX 67427364 67427457 -95172473 + (TA)n Simple_repeat Simple_repeat 1 93 0 5081 141 44 51 chrX 67427457 67427468 -95172462 - L1PB1 LINE L1 -770 5381 5371 7829 16 0 0 chrX 67427468 67428623 -95171307 - L1PA2 LINE L1 -1 6154 5000 5081 141 44 51 chrX 67428623 67429066 -95170864 - L1PB1 LINE L1 -780 5371 4924 2314 189 2 11 chrX 67429071 67429546 -95170384 + L1PB1 LINE L1 4427 4897 -1249 1214 103 0 0 chrX 67429558 67429732 -95170198 + L1PB1 LINE L1 5737 5910 -241 1754 237 3 17 chrX 67429750 67430100 -95169830 - L1PA13 LINE L1 -5174 1613 1269 887 292 95 34 chrX 67430140 67430465 -95169465 - L1PA13 LINE L1 -5611 1176 832 3445 228 38 3 chrX 67430494 67431205 -95168725 - L1PA13 LINE L1 -6051 736 1 4328 147 53 7 chrX 67431298 67432135 -95167795 - L1PB2 LINE L1 -4 6147 5273 39960 59 2 1 chrX 67432141 67438266 -95161664 - L1PA4 LINE L1 -5 6150 13 581 59 0 24 chrX 67438276 67438361 -95161569 - L1PA5 LINE L1 -2 6152 6070 1695 225 23 21 chrX 67438362 67438881 -95161049 - L1P LINE L1 -831 5315 4796 498 297 32 23 chrX 67438899 67439020 -95160910 - L1MDa LINE L1 -2692 3848 3730 1832 135 74 40 chrX 67439020 67439346 -95160584 + MER1B DNA MER1_type 1 337 0 498 297 32 23 chrX 67439346 67439655 -95160275 - L1MDa LINE L1 -2810 3730 3414 337 228 23 33 chrX 67439682 67439820 -95160110 + L1MEc LINE L1 2314 2424 -3791 * 1297 262 58 23 chrX 67439813 67440587 -95159343 - L1MDa LINE L1 -3131 3409 2609 351 320 94 96 chrX 67441109 67441628 -95158302 - L1MDa LINE L1 -5592 948 431 256 279 29 0 chrX 67441699 67441767 -95158163 - L1MDa LINE L1 -5904 636 567 438 265 85 45 chrX 67441840 67442040 -95157890 - L1MDa LINE L1 -6257 283 76 190 253 333 0 chrX 67442216 67442303 -95157627 - L2 LINE L2 -23 3290 3175 252 203 0 54 chrX 67443195 67443269 -95156661 - MER65-int LTR ERV1 -2503 2368 2299 12172 210 34 23 chrX 67445015 67447059 -95152871 - L1PB3 LINE L1 -7 6204 4185 608 59 12 0 chrX 67447059 67447144 -95152786 + (TTTTC)n Simple_repeat Simple_repeat 4 89 0 12172 210 34 23 chrX 67447144 67451200 -95148730 - L1PB3 LINE L1 -2026 4185 31 3706 278 29 14 chrX 67451192 67453311 -95146619 - L1PBa LINE L1 -5224 1639 3 * 445 322 127 18 chrX 67453335 67454401 -95145529 - L1M4 LINE L1 -1823 4323 3142 3205 97 21 0 chrX 67454402 67454867 -95145063 - L1PA13 LINE L1 -5 6158 5684 714 149 18 0 chrX 67454868 67454982 -95144948 + LTR10D-int LTR ERV1 2180 2295 -3651 2265 163 20 8 chrX 67454982 67455381 -95144549 + LTR10D-int LTR ERV1 3012 3415 -4122 33233 196 11 16 chrX 67455556 67462149 -95137781 + LTR10D-int LTR ERV1 1197 7759 -26 3647 72 9 34 chrX 67462164 67462690 -95137240 + LTR10D LTR ERV1 1 513 0 16804 103 23 26 chrX 67462690 67465351 -95134579 + MER61A-int LTR ERV1 2566 5217 0 1605 173 64 21 chrX 67465351 67465680 -95134250 + MER61A LTR ERV1 1 343 0 1193 152 10 0 chrX 67465680 67465877 -95134053 - MER57A LTR ERV1 -200 203 5 1313 261 35 116 chrX 67466001 67466220 -95133710 + L1M4 LINE L1 307 542 -6000 5479 126 28 3 chrX 67466220 67467071 -95132859 + MER4D LTR ERV1 1 872 0 1313 261 35 116 chrX 67467071 67467995 -95131935 + L1M4 LINE L1 542 1357 -5185 895 349 37 20 chrX 67467997 67468639 -95131291 + L1PA15-16 LINE L1 1 626 -6223 17281 194 27 9 chrX 67468826 67470331 -95129599 - L1MA2 LINE L1 -22 7701 6224 1762 126 63 111 chrX 67470331 67470711 -95129219 - THE1B LTR MaLR -2 362 1 11207 105 10 8 chrX 67470712 67472288 -95127642 - THE1B-int LTR MaLR -1 1579 1 2294 126 31 14 chrX 67472288 67472646 -95127284 - THE1B LTR MaLR 0 364 1 17281 194 27 9 chrX 67472646 67478670 -95121260 - L1MA2 LINE L1 -1498 6225 16 3931 218 22 21 chrX 67478671 67480131 -95119799 + L1MB1 LINE L1 4211 5674 -494 2057 132 0 3 chrX 67482320 67482615 -95117315 + AluSg SINE Alu 1 294 -16 1361 56 6 0 chrX 67482636 67482815 -95117115 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5255 160 20 25 chrX 67482827 67483745 -95116185 - MER49 LTR ERV1 -10 913 1 33644 99 51 8 chrX 67483911 67489799 -95110131 - L1PA6 LINE L1 -1 6153 10 1135 188 54 0 chrX 67490195 67490419 -95109511 + L1MB1 LINE L1 5652 5887 -302 1197 237 25 28 chrX 67490423 67490781 -95109149 + L1ME1 LINE L1 4479 4835 -1311 1414 251 51 53 chrX 67490809 67491340 -95108590 - LTR55 LTR ERV -18 530 1 587 258 6 12 chrX 67491340 67491503 -95108427 + L1ME1 LINE L1 4847 5008 -1138 1191 164 5 24 chrX 67491514 67491721 -95108209 - AluJo SINE Alu -23 289 87 849 227 77 6 chrX 67491721 67492383 -95107547 + L1ME1 LINE L1 5007 5909 -257 * 3920 45 8 0 chrX 67492379 67492869 -95107061 - L1P LINE L1 -1506 4640 4147 3459 94 2 6 chrX 67492855 67493355 -95106575 - L1P LINE L1 -3223 2923 2426 * 209 125 125 0 chrX 67493584 67493624 -95106306 - L2 LINE L2 -14 3258 3214 238 329 59 12 chrX 67494592 67494677 -95105253 - MIR SINE MIR -62 146 58 2179 63 0 0 chrX 67496634 67496918 -95103012 - L1P LINE L1 -3706 2440 2157 6554 75 18 0 chrX 67496918 67498415 -95101515 + L1PA6 LINE L1 4641 6150 -4 410 260 83 31 chrX 67498454 67498646 -95101284 + L1MB8 LINE L1 5894 6095 -83 3988 198 73 20 chrX 67498650 67499652 -95100278 - L1MDb LINE L1 -2979 4586 3532 2321 258 30 31 chrX 67499655 67500299 -95099631 - L1 LINE L1 -6907 658 16 840 217 124 9 chrX 67500399 67500625 -95099305 - L1ME LINE L1 -448 5714 5463 1581 191 10 23 chrX 67500837 67501136 -95098794 - AluJb SINE Alu -17 295 1 6579 146 26 11 chrX 67501159 67503304 -95096626 - L1MA4 LINE L1 -9 6291 4109 1557 167 10 3 chrX 67503331 67503636 -95096294 - L1MB3 LINE L1 -4 6179 5873 249 33 0 0 chrX 67505786 67505816 -95094114 + (GGA)n Simple_repeat Simple_repeat 1 30 0 376 206 59 59 chrX 67507354 67507524 -95092406 - L1ME4a LINE L1 -5 6116 5947 1606 224 141 16 chrX 67508731 67509241 -95090689 - MER90 LTR ERV1 0 575 2 668 242 113 16 chrX 67509616 67509810 -95090120 + MIR SINE MIR 39 251 -11 743 163 8 0 chrX 67509903 67510026 -95089904 - AluJb SINE Alu -30 282 159 2161 103 0 4 chrX 67510444 67510725 -95089205 - AluSq SINE Alu -33 280 1 480 105 0 0 chrX 67510733 67510809 -95089121 + (CA)n Simple_repeat Simple_repeat 1 76 0 324 264 184 0 chrX 67511318 67511443 -95088487 - MIR SINE MIR -113 149 2 2281 106 0 0 chrX 67511519 67511821 -95088109 + AluSp SINE Alu 1 302 -11 330 256 0 12 chrX 67512126 67512208 -95087722 + MIR SINE MIR 82 162 -100 263 140 20 0 chrX 67512208 67512258 -95087672 + (TA)n Simple_repeat Simple_repeat 2 52 0 248 298 0 11 chrX 67512260 67512354 -95087576 + MIR SINE MIR 166 258 -4 2320 204 32 4 chrX 67512593 67513234 -95086696 - L1MDb LINE L1 -4917 2648 1997 * 2734 208 91 14 chrX 67513227 67513788 -95086142 - L1MC3 LINE L1 -314 7471 6845 213 108 0 0 chrX 67513788 67513825 -95086105 + (TG)n Simple_repeat Simple_repeat 2 38 0 2734 208 91 14 chrX 67513825 67513959 -95085971 - L1MC3 LINE L1 -940 6845 6723 26 30 0 0 chrX 67513981 67514014 -95085916 + AT_rich Low_complexity Low_complexity 1 33 0 2212 221 26 11 chrX 67514014 67514596 -95085334 - L1MB3 LINE L1 -367 5816 5225 13512 144 32 28 chrX 67514600 67515512 -95084418 - Tigger1 DNA MER2_type -4 2414 1508 2022 150 17 14 chrX 67515512 67515866 -95084064 + THE1A LTR MaLR 1 355 0 11157 112 6 2 chrX 67515866 67517441 -95082489 + THE1A-int LTR MaLR 1 1580 0 1797 161 59 34 chrX 67517441 67517796 -95082134 + THE1B LTR MaLR 1 364 0 13512 144 32 28 chrX 67517796 67519280 -95080650 - Tigger1 DNA MER2_type -909 1509 5 1767 181 92 88 chrX 67519306 67519826 -95080104 - MER4D-int LTR ERV1 -298 6460 5939 6044 209 40 54 chrX 67519868 67521200 -95078730 - L1M1 LINE L1 -6164 1401 87 432 0 0 0 chrX 67521200 67521248 -95078682 + (TG)n Simple_repeat Simple_repeat 2 49 0 6044 209 40 54 chrX 67521248 67521323 -95078607 - L1M1 LINE L1 -7478 87 13 1328 200 122 99 chrX 67521335 67522183 -95077747 - MER4D-int LTR ERV1 -5562 1036 90 4818 142 37 18 chrX 67522249 67523104 -95076826 - MER4D LTR ERV1 0 872 1 2573 230 112 97 chrX 67523104 67523981 -95075949 - L1M4 LINE L1 -3573 2809 1946 3090 138 29 40 chrX 67523981 67524526 -95075404 + L1PA15 LINE L1 5614 6152 -13 2573 230 112 97 chrX 67524526 67524701 -95075229 - L1M4 LINE L1 -4436 1946 1775 934 148 7 0 chrX 67524701 67524850 -95075080 + MER4D LTR ERV1 744 893 -10 2573 230 112 97 chrX 67524850 67525414 -95074516 - L1M4 LINE L1 -4607 1775 1221 1938 141 3 3 chrX 67525414 67525704 -95074226 - AluSx SINE Alu -22 290 1 2573 230 112 97 chrX 67525704 67525830 -95074100 - L1M4 LINE L1 -5161 1221 1098 1891 169 3 3 chrX 67525830 67526131 -95073799 - AluSx SINE Alu -11 301 1 2573 230 112 97 chrX 67526131 67526452 -95073478 - L1M4 LINE L1 -5284 1098 565 4471 118 32 33 chrX 67526454 67527564 -95072366 + MER11A LTR ERVK 1 1071 0 1661 245 44 72 chrX 67527687 67528255 -95071675 - MLT2B3 LTR ERVL -2 552 1 673 56 243 0 chrX 67528779 67528886 -95071044 - L1PA7 LINE L1 -3 6151 6019 7518 102 3 2 chrX 67528918 67530752 -95069178 - L1PA7 LINE L1 -3 6151 4286 23327 66 2 4 chrX 67530752 67534743 -95065187 - L1PA7 LINE L1 -2103 4043 52 12345 121 12 50 chrX 67534743 67535109 -95064821 - L1P3 LINE L1 -3955 2506 2128 1896 154 7 3 chrX 67535109 67535402 -95064528 + AluSq SINE Alu 1 294 -19 12345 121 12 50 chrX 67535402 67537558 -95062372 - L1P3 LINE L1 -4333 2128 3 402 100 0 0 chrX 67537981 67538041 -95061889 + (TG)n Simple_repeat Simple_repeat 2 61 0 4440 206 40 31 chrX 67538082 67539191 -95060739 - L1MC3 LINE L1 -96 7689 6571 240 272 0 22 chrX 67539185 67539277 -95060653 + L1MC4 LINE L1 6614 6703 -1339 * 4680 237 29 35 chrX 67539231 67540978 -95058952 - L1MC3 LINE L1 -743 5403 4906 2540 241 48 19 chrX 67540984 67541888 -95058042 - L1MC3 LINE L1 -1420 4726 3797 1269 140 0 0 chrX 67541907 67542107 -95057823 + L1PB1 LINE L1 1 200 -6663 7152 52 1 0 chrX 67542126 67543709 -95056221 - L1PA4 LINE L1 -1 6154 4572 9016 172 54 5 chrX 67543709 67547522 -95052408 + L1PB1 LINE L1 640 4808 -2054 3460 72 0 7 chrX 67547526 67547969 -95051961 + MLT2A1 LTR ERVL 5 444 0 13664 80 15 1 chrX 67547969 67548905 -95051025 + HERVL-A1 LTR ERVL 1 975 -4679 1764 125 12 0 chrX 67548905 67549161 -95050769 + AluSc SINE Alu 41 299 -10 13664 80 15 1 chrX 67549161 67550007 -95049923 + HERVL-A1 LTR ERVL 975 1808 -3846 * 26777 92 2 3 chrX 67549998 67553526 -95046404 + HERVL-A1 LTR ERVL 2083 5607 -47 1417 111 0 0 chrX 67553552 67553741 -95046189 + AluY SINE Alu 122 310 -1 323 164 0 0 chrX 67553741 67553796 -95046134 + HERVL-A1 LTR ERVL 5600 5654 0 2925 91 18 2 chrX 67553796 67554190 -95045740 + MLT2A1 LTR ERVL 1 400 -44 3961 253 67 4 chrX 67554191 67555363 -95044567 + L1PB1 LINE L1 4833 6078 -784 4383 113 38 6 chrX 67555366 67555725 -95044205 + L1PB1 LINE L1 6133 6479 -388 375 23 0 0 chrX 67555725 67555769 -95044161 + (TA)n Simple_repeat Simple_repeat 2 45 0 4383 113 38 6 chrX 67555769 67556114 -95043816 + L1PB1 LINE L1 6479 6860 -7 447 73 0 0 chrX 67556135 67556203 -95043727 + (CATA)n Simple_repeat Simple_repeat 2 69 0 759 286 73 26 chrX 67556206 67556696 -95043234 - L1M4 LINE L1 -2339 4305 3793 368 211 30 108 chrX 67556699 67556865 -95043065 - L1M4 LINE L1 -4997 1649 1497 1742 218 53 29 chrX 67556865 67557314 -95042616 - MLT1C LTR MaLR 0 467 8 1038 232 51 6 chrX 67557321 67557653 -95042277 - L1M4 LINE L1 -5037 1505 1159 405 261 43 9 chrX 67557648 67557763 -95042167 + L1PB1 LINE L1 15 133 -7432 * 11024 161 78 37 chrX 67557759 67559962 -95039968 + L1PB1 LINE L1 1103 3396 -4169 2500 95 56 0 chrX 67559985 67560342 -95039588 + MER51B LTR ERV1 1 377 0 4272 118 43 10 chrX 67560342 67561652 -95038278 + MER51B-int LTR ERV1 1 1437 -6379 677 165 92 61 chrX 67561652 67561816 -95038114 + MER4A LTR ERV1 366 534 -130 8719 112 45 1 chrX 67561816 67563278 -95036652 + MER51B-int LTR ERV1 1801 3327 -4489 1908 211 50 21 chrX 67563251 67563735 -95036195 + MER51B-int LTR ERV1 1474 1971 -3246 * 1988 144 125 3 chrX 67563722 67564098 -95035832 + MER51B-int LTR ERV1 2224 2645 -2572 365 163 109 11 chrX 67564097 67564189 -95035741 + MER51B-int LTR ERV1 5249 5349 -2188 * 9034 142 64 14 chrX 67564179 67566102 -95033828 + MER51B-int LTR ERV1 5620 7815 -1 972 140 58 6 chrX 67566104 67566275 -95033655 + MER51B LTR ERV1 1 180 -197 13291 187 15 12 chrX 67566277 67569719 -95030211 + L1PB1 LINE L1 3741 7195 -375 414 57 0 0 chrX 67569719 67569772 -95030158 + (TA)n Simple_repeat Simple_repeat 1 53 0 13291 187 15 12 chrX 67569772 67570148 -95029782 + L1PB1 LINE L1 7195 7569 -1 15239 166 18 6 chrX 67570154 67575474 -95024456 + L1MA2 LINE L1 2319 7700 -23 1581 232 41 22 chrX 67575507 67575874 -95024056 - MER74A LTR ERVL -67 491 118 540 305 18 0 chrX 67576060 67576224 -95023706 + HERVL68 LTR ERVL 2183 2349 -688 1360 206 16 23 chrX 67576252 67576558 -95023372 + HERVL68 LTR ERVL 2734 3037 0 1024 275 122 70 chrX 67576563 67577080 -95022850 + MER68 LTR ERV1 13 556 -6 1470 222 52 24 chrX 67577086 67577627 -95022303 - L1MDa LINE L1 -4021 2519 1964 180 0 0 0 chrX 67577690 67577710 -95022220 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 747 198 0 0 chrX 67580255 67580381 -95019549 - MER90 LTR ERV1 0 614 489 * 1253 219 39 64 chrX 67580380 67580741 -95019189 + MER68 LTR ERV1 16 367 -195 1024 211 32 49 chrX 67580825 67581072 -95018858 + MER68 LTR ERV1 320 562 0 471 289 13 78 chrX 67581083 67581715 -95018215 + MER68-int LTR ERV1 14 230 -3961 6590 194 47 23 chrX 67581132 67581174 -95018756 + HERVL68 LTR ERVL 13 53 -2984 2268 167 65 2 chrX 67581174 67581575 -95018355 + MSTB LTR MaLR 1 426 0 6590 194 47 23 chrX 67581575 67584317 -95015613 + HERVL68 LTR ERVL 53 2990 -47 2090 234 29 22 chrX 67584345 67584897 -95015033 + MER68 LTR ERV1 1 556 -6 1425 202 74 9 chrX 67584980 67585317 -95014613 - MER90 LTR ERV1 -216 359 1 648 148 78 0 chrX 67585695 67585837 -95014093 - L1MA8 LINE L1 -6 6285 6133 3037 25 0 0 chrX 67586624 67586980 -95012950 - L1PA4 LINE L1 -2 6153 5798 2277 100 10 7 chrX 67586986 67587295 -95012635 - AluSx SINE Alu -2 310 1 2320 108 3 0 chrX 67587681 67587977 -95011953 - AluSx SINE Alu -15 297 1 1568 113 66 4 chrX 67588086 67588343 -95011587 - MER7A DNA MER2_type -75 271 1 285 93 0 0 chrX 67588343 67588376 -95011554 + MLT2B2 LTR ERVL 471 503 -12 1976 146 4 141 chrX 67588787 67589327 -95010603 - MER31B LTR ERV1 0 466 1 195 100 0 0 chrX 67589356 67589386 -95010544 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chrX 67589581 67589612 -95010318 + AT_rich Low_complexity Low_complexity 1 31 0 406 280 129 11 chrX 67589647 67589918 -95010012 + L1ME4a LINE L1 5819 6121 0 245 29 0 29 chrX 67590086 67590121 -95009809 + (CA)n Simple_repeat Simple_repeat 1 34 0 2024 107 13 44 chrX 67592353 67592670 -95007260 + AluY SINE Alu 1 307 -4 452 210 89 74 chrX 67594107 67594378 -95005552 - ORSL DNA AcHobo 0 275 1 219 275 15 30 chrX 67594652 67594783 -95005147 + GA-rich Low_complexity Low_complexity 5 133 0 285 206 0 15 chrX 67594987 67595055 -95004875 - MIR SINE MIR -3 259 193 378 216 31 56 chrX 67595746 67595908 -95004022 + HAL1b LINE L1 665 822 -526 934 209 70 110 chrX 67596265 67596639 -95003291 + L2 LINE L2 2941 3299 -14 189 121 0 0 chrX 67596641 67596674 -95003256 + (T)n Simple_repeat Simple_repeat 1 33 0 40257 41 22 2 chrX 67596702 67602731 -94997199 - L1PA4 LINE L1 -3 6152 1 3413 40 0 14 chrX 67602732 67603177 -94996753 - L1P1 LINE L1 -370 5785 5347 1136 78 0 0 chrX 67603183 67603349 -94996581 + L1P LINE L1 4233 4398 -1748 3610 214 91 12 chrX 67603357 67604569 -94995361 + L1ME1 LINE L1 3797 5103 -1043 2157 221 16 80 chrX 67604585 67605272 -94994658 + L1ME1 LINE L1 5254 5879 -287 267 31 0 0 chrX 67605272 67605304 -94994626 + (TG)n Simple_repeat Simple_repeat 1 32 0 2157 221 16 80 chrX 67605304 67605449 -94994481 + L1ME1 LINE L1 5879 6032 -134 5715 137 36 1 chrX 67605450 67606415 -94993515 + Tigger1 DNA MER2_type 1259 2257 -161 323 272 11 28 chrX 67606486 67606677 -94993253 + L1ME3A LINE L1 5684 5879 -291 748 246 54 83 chrX 67606706 67606749 -94993181 - MLT2D LTR ERVL -10 404 361 204 40 0 0 chrX 67606749 67606774 -94993156 + (GA)n Simple_repeat Simple_repeat 2 26 0 748 246 54 83 chrX 67606774 67607140 -94992790 - MLT2D LTR ERVL -53 361 7 21 0 0 0 chrX 67607372 67607393 -94992537 + AT_rich Low_complexity Low_complexity 1 21 0 13292 16 0 0 chrX 67607470 67609838 -94990092 - L1HS LINE L1 -4 6151 3784 602 183 0 0 chrX 67609993 67610097 -94989833 + U6 snRNA snRNA 1 104 -3 2270 237 18 5 chrX 67610115 67610853 -94989077 + L1PA13 LINE L1 1667 2579 -4218 689 191 28 0 chrX 67610853 67610994 -94988936 + L1PA16 LINE L1 6014 6158 -8 291 169 17 0 chrX 67611031 67611090 -94988840 - L1MEc LINE L1 -4326 2070 2011 1106 297 24 20 chrX 67611173 67611938 -94987992 - ERVL LTR ERVL -4752 1012 172 423 143 31 31 chrX 67612159 67612257 -94987673 - L1PB2 LINE L1 -10 6141 6044 4781 76 2 0 chrX 67612319 67612937 -94986993 - L1PA7 LINE L1 -10 6144 5526 * 6406 84 16 3 chrX 67612932 67614608 -94985322 + L1PA7 LINE L1 4465 6153 -1 3605 203 53 18 chrX 67614612 67614772 -94985158 - L1PA13 LINE L1 -4313 2484 2331 1820 150 25 0 chrX 67614772 67615070 -94984860 - AluSx SINE Alu 0 305 1 3605 203 53 18 chrX 67615070 67615947 -94983983 - L1PA13 LINE L1 -4466 2331 1413 28774 48 8 0 chrX 67715962 67720220 -94879710 - L1PA6 LINE L1 -49 6105 1819 561 297 0 0 chrX 67720361 67720509 -94879421 + L1M3 LINE L1 5438 5585 -598 * 6342 109 1 1 chrX 67720501 67721422 -94878508 - L1PA7 LINE L1 -968 5178 4258 6045 86 7 1 chrX 67721422 67722312 -94877618 + L1PA7 LINE L1 5181 6074 -80 10693 135 13 1 chrX 67722488 67724938 -94874992 - L1PA8 LINE L1 -3 6169 3697 762 34 0 0 chrX 67725067 67725155 -94874775 - L1P LINE L1 -3838 2308 2221 15273 24 6 1 chrX 67725155 67727611 -94872319 + L1PA4 LINE L1 3696 6155 0 18142 104 10 3 chrX 67727739 67731040 -94868890 + L1PA7 LINE L1 2832 6154 0 1876 143 51 19 chrX 67731044 67731416 -94868514 + L1M1 LINE L1 3245 3628 -3937 * 5639 146 17 16 chrX 67731409 67732903 -94867027 + L1PBa LINE L1 1 1719 -5144 2037 145 57 23 chrX 67732903 67733255 -94866675 + THE1B LTR MaLR 1 364 0 8458 104 18 2 chrX 67733255 67734412 -94865518 + THE1B-int LTR MaLR 1 1176 -404 * 8605 194 37 29 chrX 67734361 67737081 -94862849 + L1M2 LINE L1 177 2874 -3974 2143 183 33 9 chrX 67737081 67737501 -94862429 - MSTB1 LTR MaLR 0 432 3 8605 194 37 29 chrX 67737501 67738486 -94861444 + L1M2 LINE L1 2874 3916 -2932 7572 31 1 0 chrX 67738486 67739716 -94860214 + L1PA4 LINE L1 4925 6155 0 8605 194 37 29 chrX 67739716 67740201 -94859729 + L1M2 LINE L1 3916 4396 -2452 1515 144 56 4 chrX 67740213 67740483 -94859447 + L1P3 LINE L1 10 293 -6168 1249 159 51 0 chrX 67740517 67740774 -94859156 + L1MA4A LINE L1 5817 6086 -217 248 105 26 0 chrX 67740787 67740825 -94859105 + L1P3 LINE L1 415 453 -6008 1322 132 33 0 chrX 67740827 67741069 -94858861 + L1MA4A LINE L1 6052 6301 -2 1192 191 4 30 chrX 67741071 67741307 -94858623 + AluJo SINE Alu 44 273 -39 645 244 137 9 chrX 67741461 67741797 -94858133 + L1MB7 LINE L1 3329 3707 -2439 990 251 34 6 chrX 67741836 67742159 -94857771 + L1MB7 LINE L1 4538 4869 -1277 1236 261 46 83 chrX 67742161 67742797 -94857133 - LTR9 LTR ERV1 0 612 1 1545 208 46 26 chrX 67742801 67742967 -94856963 + L1MB7 LINE L1 4872 5033 -1113 2287 73 0 14 chrX 67742967 67743277 -94856653 + AluY SINE Alu 1 306 0 1545 208 46 26 chrX 67743277 67743562 -94856368 + L1MB7 LINE L1 5033 5333 -813 918 221 33 8 chrX 67743557 67743801 -94856129 + L1MD2 LINE L1 5679 5928 -431 * 1487 175 20 42 chrX 67743804 67744159 -94855771 + L1MD2 LINE L1 6010 6356 -3 3117 189 52 8 chrX 67744161 67744898 -94855032 + L1MB7 LINE L1 5324 6092 -92 873 147 50 50 chrX 67745003 67745241 -94854689 + L1MD2 LINE L1 6119 6356 -3 3170 188 60 8 chrX 67745243 67746008 -94853922 + L1MB7 LINE L1 5324 6128 -56 2116 8 0 8 chrX 67746996 67747233 -94852697 - AluYb8 SINE Alu -12 306 72 256 279 70 23 chrX 67747470 67747556 -94852374 + MIR SINE MIR 4 93 -115 365 289 74 7 chrX 67747720 67747855 -94852075 + MIR SINE MIR 90 233 -29 789 251 38 29 chrX 67748021 67748260 -94851670 + MIR SINE MIR 2 242 -20 267 31 0 0 chrX 67748934 67748966 -94850964 + (TCG)n Simple_repeat Simple_repeat 1 32 0 501 84 0 0 chrX 67748987 67749058 -94850872 + (GGA)n Simple_repeat Simple_repeat 2 72 0 641 269 23 23 chrX 67749706 67749881 -94850049 + MIR3 SINE MIR 16 190 -18 32194 55 10 9 chrX 67750424 67755598 -94844332 + L1PA3 LINE L1 841 6017 -138 567 288 137 0 chrX 67757948 67758167 -94841763 - MIR SINE MIR -6 256 8 229 260 204 17 chrX 67758485 67758720 -94841210 - L1MC4a LINE L1 -1666 6142 5864 1002 164 45 5 chrX 67759096 67759316 -94840614 - L1MA9 LINE L1 -33 6279 6051 6910 120 0 16 chrX 67760354 67761483 -94838447 + HERVH LTR ERV1 1877 2987 -4726 920 121 0 0 chrX 67761477 67761626 -94838304 + HERVH LTR ERV1 3140 3288 -4425 * 3132 116 0 4 chrX 67761632 67762122 -94837808 + HERVH LTR ERV1 3505 3992 -3721 1886 149 1 4 chrX 67762154 67762482 -94837448 + HERVH LTR ERV1 3955 4288 -2749 4735 116 3 2 chrX 67762482 67763361 -94836569 + HERVH LTR ERV1 4221 5149 -2564 1265 139 23 0 chrX 67763362 67763577 -94836353 + HERVH LTR ERV1 5600 5819 -1894 2293 82 50 13 chrX 67763577 67763953 -94835977 + HERVH LTR ERV1 7324 7713 0 5529 206 50 11 chrX 67764778 67765974 -94833956 + MST-int LTR MaLR 357 1599 -52 1948 88 16 29 chrX 67765974 67766215 -94833715 + LTR7 LTR ERV1 1 280 -170 2201 101 3 32 chrX 67766215 67766531 -94833399 - AluSg SINE Alu -3 307 1 1948 88 16 29 chrX 67766531 67766692 -94833238 + LTR7 LTR ERV1 280 442 -8 4510 127 22 45 chrX 67766700 67768174 -94831756 + HERVH LTR ERV1 1 1554 -6159 397 296 106 48 chrX 67768340 67768651 -94831279 + L2 LINE L2 2422 2750 -564 367 321 139 35 chrX 67768718 67769170 -94830760 + L2 LINE L2 1531 2029 -1285 426 336 156 45 chrX 67769313 67770084 -94829846 + L2 LINE L2 2010 2865 -449 340 324 74 40 chrX 67770174 67770350 -94829580 + L2 LINE L2 3079 3260 -12 309 332 63 61 chrX 67772664 67773264 -94826666 - L2 LINE L2 -739 2575 1886 2227 118 26 6 chrX 67774263 67774612 -94825318 - L1PA16 LINE L1 0 6166 5811 1614 82 11 19 chrX 67774712 67774981 -94824949 + HERVH LTR ERV1 7447 7713 0 2508 103 128 5 chrX 67774981 67775380 -94824550 + LTR7 LTR ERV1 1 448 -2 295 135 39 0 chrX 67775385 67775437 -94824493 + MSTB-int LTR MaLR 1598 1651 0 2256 174 16 12 chrX 67775437 67775684 -94824246 + MSTB LTR MaLR 1 252 -174 2376 146 33 24 chrX 67775684 67776108 -94823822 + MSTA LTR MaLR 1 428 0 2256 174 16 12 chrX 67776108 67776284 -94823646 + MSTB LTR MaLR 252 426 0 234 228 0 38 chrX 67776338 67776417 -94823513 + L1ME LINE L1 5708 5783 -381 465 296 84 49 chrX 67777731 67778018 -94821912 + L1MCa LINE L1 1185 1613 -4813 692 260 74 7 chrX 67778559 67778844 -94821086 + L1MCc LINE L1 1153 1456 -4967 1998 318 52 18 chrX 67778851 67779833 -94820097 + L1M3a LINE L1 12 1026 -4929 * 3053 154 51 5 chrX 67779817 67779973 -94819957 + L1MA9 LINE L1 5330 5477 -835 2005 149 17 0 chrX 67779973 67780268 -94819662 + AluSx SINE Alu 1 300 -12 3053 154 51 5 chrX 67780268 67780550 -94819380 + L1MA9 LINE L1 5477 5804 -508 308 24 24 0 chrX 67780550 67780591 -94819339 + (CA)n Simple_repeat Simple_repeat 2 43 0 3053 154 51 5 chrX 67780591 67780736 -94819194 + L1MA9 LINE L1 5804 5941 -371 1298 211 8 4 chrX 67780744 67780995 -94818935 + AluJo SINE Alu 1 252 -60 24 0 0 0 chrX 67781004 67781028 -94818902 + AT_rich Low_complexity Low_complexity 1 24 0 771 224 4 61 chrX 67781029 67781275 -94818655 + L1MA9 LINE L1 5936 6167 -145 898 263 55 13 chrX 67781423 67781951 -94817979 + L1MCc LINE L1 1456 2005 -4936 251 263 88 0 chrX 67782101 67782215 -94817715 + L1MCc LINE L1 1970 2093 -4848 9715 153 24 18 chrX 67782224 67784176 -94815754 + L1P3 LINE L1 10 1973 -4488 2931 103 4 51 chrX 67784197 67784709 -94815221 + L1P3 LINE L1 2446 2933 -3528 458 253 185 7 chrX 67786541 67786687 -94813243 - MIR SINE MIR 0 262 91 24 0 0 0 chrX 67787925 67787949 -94811981 + AT_rich Low_complexity Low_complexity 1 24 0 875 261 84 4 chrX 67787982 67788243 -94811687 + MER102b DNA MER1_type 60 341 0 323 191 55 64 chrX 67788299 67788409 -94811521 + MIR SINE MIR 80 188 -74 23 33 0 0 chrX 67788438 67788468 -94811462 + AT_rich Low_complexity Low_complexity 1 30 0 372 253 77 0 chrX 67788544 67788635 -94811295 - MIR3 SINE MIR -46 162 65 1121 213 14 0 chrX 67788794 67789005 -94810925 - MER58A DNA MER1_type 0 224 11 970 237 30 13 chrX 67790036 67790333 -94809597 - L1MB7 LINE L1 -2 6182 5862 766 184 32 16 chrX 67790333 67790523 -94809407 - L1MB4 LINE L1 -3 6177 5985 1319 249 100 39 chrX 67790525 67791136 -94808794 - L1M4c LINE L1 -2515 3867 3220 468 167 0 0 chrX 67791138 67791210 -94808720 - MLT1B LTR MaLR -318 72 1 994 216 141 9 chrX 67791211 67791698 -94808232 - L1M4c LINE L1 -4014 2370 1730 14402 24 0 0 chrX 67791799 67794195 -94805735 - L1PA2 LINE L1 -63 6092 3697 22054 89 11 0 chrX 67794195 67798107 -94801823 + L1PA7 LINE L1 2220 6154 0 22430 136 11 29 chrX 67798107 67802712 -94797218 + L1PA8 LINE L1 1644 6169 -3 328 259 67 7 chrX 67802740 67802891 -94797039 + L1MCa LINE L1 1551 2148 -4279 5352 154 1 1 chrX 67802891 67804241 -94795689 + L1PA16 LINE L1 4812 6166 0 1080 263 160 29 chrX 67804251 67805206 -94794724 + L1M4 LINE L1 1183 2374 -4451 180 0 0 0 chrX 67805235 67805255 -94794675 + (A)n Simple_repeat Simple_repeat 1 20 0 1609 276 49 10 chrX 67805343 67806292 -94793638 + L1M4 LINE L1 2262 3210 -3434 22058 131 16 100 chrX 67806417 67811147 -94788783 - L1P LINE L1 -1813 4333 4 2896 240 39 4 chrX 67811155 67812062 -94787868 - L1M4 LINE L1 -1045 5337 4400 2048 113 0 10 chrX 67812063 67812354 -94787576 + AluSx SINE Alu 1 288 -24 1696 238 2 2 chrX 67812358 67812761 -94787169 + L1M4 LINE L1 4348 4750 -1894 1678 196 33 47 chrX 67812871 67813321 -94786609 - L1M4 LINE L1 -4584 1800 1357 438 272 9 0 chrX 67813313 67813466 -94786464 - L1MCa LINE L1 -4588 1794 1640 * 5226 152 55 16 chrX 67813478 67814472 -94785458 - L1MC2 LINE L1 -9 6335 5309 2296 190 129 15 chrX 67814570 67815229 -94784701 - L1MC2 LINE L1 -814 5332 4599 * 5491 216 17 14 chrX 67815221 67816575 -94783355 - L1 LINE L1 -1837 4309 2952 2327 250 18 18 chrX 67816554 67817281 -94782649 - L1PA15-16 LINE L1 -4459 2390 1664 * 1525 147 4 0 chrX 67817323 67817601 -94782329 - AluSx SINE Alu 0 328 50 2516 221 18 4 chrX 67817810 67818353 -94781577 - L1MB4 LINE L1 -51 6129 5579 5797 82 9 1 chrX 67818361 67819159 -94780771 - L1PA7 LINE L1 -6 6148 5345 254 301 84 84 chrX 67819701 67819751 -94780179 - MIR SINE MIR -7 255 206 6337 117 99 23 chrX 67819751 67820559 -94779371 + Tigger3b DNA MER2_type 2 924 -2104 224 59 29 0 chrX 67820559 67820593 -94779337 + (CTCA)n Simple_repeat Simple_repeat 4 38 0 6337 117 99 23 chrX 67820593 67820926 -94779004 + Tigger3b DNA MER2_type 924 1230 -1 254 301 84 84 chrX 67820926 67821078 -94778852 - MIR SINE MIR -55 207 53 183 330 94 19 chrX 67821112 67821218 -94778712 + L2 LINE L2 3199 3312 -1 3888 236 11 3 chrX 67821327 67822325 -94777605 + L1PA8A LINE L1 3116 4121 -2025 14054 102 8 26 chrX 67822438 67824685 -94775245 + L1P LINE L1 3230 5428 -726 7095 53 0 7 chrX 67824685 67825615 -94774315 - L1P LINE L1 -2479 3667 2744 5940 102 17 1 chrX 67825762 67827473 -94772457 + L1PA8A LINE L1 4380 6130 -1 5381 180 42 12 chrX 67827473 67828665 -94771265 - L1MB4 LINE L1 -1291 4855 3628 7429 113 14 1 chrX 67828765 67829838 -94770092 + HERVL-A2 LTR ERVL 4568 5654 0 1808 189 70 25 chrX 67829838 67830372 -94769558 + MLT2A2 LTR ERVL 1 554 0 4044 217 5 25 chrX 67830372 67831372 -94768558 + L1 LINE L1 3966 4945 -1201 291 162 46 74 chrX 67831545 67831639 -94768291 - L1MB4 LINE L1 -20 6154 6059 * 1489 240 104 18 chrX 67831637 67832254 -94767676 - L1 LINE L1 -2175 3971 3302 1384 250 69 25 chrX 67832301 67832869 -94767061 + L1M4 LINE L1 4490 5082 -1064 307 192 68 0 chrX 67832914 67832987 -94766943 - MER53 DNA DNA -1 188 111 225 229 71 0 chrX 67832925 67832995 -94766935 + MER53 DNA DNA 23 97 -92 * 621 270 25 15 chrX 67833032 67833236 -94766694 + L1ME1 LINE L1 5952 6157 -9 21 71 0 0 chrX 67833241 67833283 -94766647 + AT_rich Low_complexity Low_complexity 1 42 0 11958 118 8 7 chrX 67834597 67836647 -94763283 + MER61-int LTR ERV1 3049 5146 -71 253 351 0 99 chrX 67836798 67836949 -94762981 - L3 LINE CR1 -4 1573 1438 1442 217 57 40 chrX 67836972 67837377 -94762553 + MER92A LTR ERV1 1 412 0 25 31 0 0 chrX 67838182 67838214 -94761716 + AT_rich Low_complexity Low_complexity 1 32 0 398 269 28 14 chrX 67838408 67838553 -94761377 + L1MD3 LINE L1 7830 7976 -19 18455 30 8 2 chrX 67839194 67842202 -94757728 + L1PA3 LINE L1 3014 6037 -118 379 273 16 0 chrX 67842542 67842663 -94757267 + L1P LINE L1 2614 2736 -3410 7479 125 52 31 chrX 67842773 67844254 -94755676 - MER41A-int LTR ERV1 -4288 3528 1 951 97 58 0 chrX 67844254 67844409 -94755521 - MER41A LTR ERV1 0 554 391 13291 182 31 11 chrX 67844409 67847102 -94752828 - L1M1 LINE L1 -4798 2767 22 10353 232 87 31 chrX 67847109 67849573 -94750357 - L1M2 LINE L1 -707 5669 3347 2052 122 17 20 chrX 67849573 67849869 -94750061 + AluSx SINE Alu 1 295 -17 10353 232 87 31 chrX 67849869 67850989 -94748941 - L1M2 LINE L1 -3029 3347 2292 2514 69 3 0 chrX 67850989 67851295 -94748635 - AluY SINE Alu -4 307 1 10353 232 87 31 chrX 67851295 67853329 -94746601 - L1M2 LINE L1 -4084 2292 1 1945 242 57 7 chrX 67853329 67854035 -94745895 - L1M4c LINE L1 -2210 4434 3694 * 3306 229 71 29 chrX 67854034 67854514 -94745416 - L1M4c LINE L1 -3420 3224 2766 787 258 6 0 chrX 67854514 67854677 -94745253 - FAM SINE Alu -11 164 1 3306 229 71 29 chrX 67854677 67856261 -94743669 - L1M4c LINE L1 -3878 2766 1039 309 272 35 9 chrX 67856277 67856391 -94743539 - L1M4c LINE L1 -5728 918 611 5107 137 30 5 chrX 67856767 67857941 -94741989 - L1PA15 LINE L1 -19 6146 4953 5881 207 127 8 chrX 67857943 67859637 -94740293 - L1PA15 LINE L1 -1679 4467 2572 511 167 0 35 chrX 67859634 67859748 -94740182 - L1MA7 LINE L1 -249 6042 5933 * 7525 34 0 1 chrX 67859748 67861234 -94738696 - L1PA3 LINE L1 -3 6152 4669 15257 51 2 11 chrX 67861235 67863265 -94736665 - L1PA3 LINE L1 -4135 2011 1 1639 244 42 63 chrX 67863259 67863992 -94735938 - L1M2 LINE L1 -5043 1806 1089 * 240 258 65 0 chrX 67864203 67864265 -94735665 - L2 LINE L2 -1 3271 3206 234 137 59 0 chrX 67864536 67864587 -94735343 - L1P LINE L1 -1140 5006 4953 * 19207 119 169 30 chrX 67864583 67866394 -94733536 - L1P LINE L1 -1673 4473 2915 7525 34 0 1 chrX 67866394 67867880 -94732050 - L1PA3 LINE L1 -3 6152 4669 19207 119 169 30 chrX 67867880 67869990 -94729940 - L1P LINE L1 -3231 2915 7 4637 164 73 12 chrX 67869996 67871690 -94728240 - L1MA7 LINE L1 -340 5951 4156 1281 200 54 3 chrX 67871687 67871982 -94727948 - L1 LINE L1 -992 5154 4845 * 24224 132 16 18 chrX 67871982 67873129 -94726801 + L1PA8A LINE L1 227 1375 -5071 189 0 0 0 chrX 67873129 67873150 -94726780 + (CAA)n Simple_repeat Simple_repeat 1 21 0 24224 132 16 18 chrX 67873150 67878236 -94721694 + L1PA8A LINE L1 1375 6445 -1 6295 189 39 9 chrX 67878231 67879772 -94720158 - L1 LINE L1 -1286 4860 3274 * 2356 126 19 3 chrX 67879779 67880143 -94719787 - L1PA11 LINE L1 -15 6159 5790 279 79 0 0 chrX 67880146 67880184 -94719746 + (TG)n Simple_repeat Simple_repeat 2 39 0 202 234 18 27 chrX 67880171 67880282 -94719648 + (TA)n Simple_repeat Simple_repeat 1 110 0 * 309 213 11 64 chrX 67880295 67880389 -94719541 - L1MC4 LINE L1 -1339 6703 6615 302 194 0 92 chrX 67880367 67880465 -94719465 + L1MC4 LINE L1 6615 6703 -1339 * 208 197 16 16 chrX 67880474 67880535 -94719395 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 11851 153 20 23 chrX 67880536 67881924 -94718006 - L1P4 LINE L1 -383 7229 5837 2299 94 3 10 chrX 67881924 67882233 -94717697 - AluY SINE Alu -4 307 1 11851 153 20 23 chrX 67882233 67883744 -94716186 - L1P4 LINE L1 -1775 5837 4351 2585 186 52 2 chrX 67883747 67884232 -94715698 - LTR22 LTR ERVK 0 509 1 376 35 0 35 chrX 67884255 67884313 -94715617 - HERVK22 LTR ERVK -8 6829 6774 * 33109 75 12 2 chrX 67884311 67886807 -94713123 - HERVK22 LTR ERVK -666 6171 3701 941 33 0 17 chrX 67886807 67886971 -94712959 + L1PA2 LINE L1 6037 6155 0 33109 75 12 2 chrX 67886971 67890586 -94709344 - HERVK22 LTR ERVK -3136 3701 3 2654 176 47 4 chrX 67890588 67891076 -94708854 - LTR22 LTR ERVK 0 509 1 396 176 0 0 chrX 67891076 67891150 -94708780 - L1P4 LINE L1 -3231 4353 4280 2663 81 21 5 chrX 67891155 67891536 -94708394 - MLT2A1 LTR ERVL -57 387 1 7742 244 35 21 chrX 67891536 67895241 -94704689 - L1P4 LINE L1 -3299 4285 1 1988 192 55 63 chrX 67895243 67895940 -94703990 - L1 LINE L1 -2865 3983 3293 2434 168 80 0 chrX 67895996 67896584 -94703346 - L1 LINE L1 -4413 2436 1802 210 250 0 0 chrX 67896585 67896645 -94703285 + T-rich Low_complexity Low_complexity 1 60 0 41382 42 8 1 chrX 67896647 67902762 -94697168 - L1PA4 LINE L1 -3 6152 1 1668 248 45 65 chrX 67902756 67903489 -94696441 - L1 LINE L1 -5043 1806 1089 * 240 258 65 0 chrX 67903700 67903762 -94696168 - L2 LINE L2 -1 3271 3206 24 67 0 0 chrX 67905766 67905811 -94694119 + AT_rich Low_complexity Low_complexity 1 45 0 300 202 48 24 chrX 67910451 67910535 -94689395 + MIR SINE MIR 99 184 -78 13636 131 60 7 chrX 67912149 67914443 -94685487 - Tigger1 DNA MER2_type -4 2414 1 22 56 0 0 chrX 67914875 67914911 -94685019 + AT_rich Low_complexity Low_complexity 1 36 0 365 270 123 22 chrX 67915268 67915615 -94684315 + Charlie8 DNA MER1_type 26 275 -2142 190 229 0 0 chrX 67915739 67915774 -94684156 + MIR3 SINE MIR 157 191 -17 3360 84 47 22 chrX 67916459 67916992 -94682938 - L1PA10 LINE L1 -3 6165 5620 247 0 0 0 chrX 67917022 67917053 -94682877 - L1PA10 LINE L1 -527 5639 5609 407 268 81 8 chrX 67917260 67917495 -94682435 - L1ME4a LINE L1 -262 5859 5608 20522 101 16 4 chrX 67917635 67921589 -94678341 + L1PA7 LINE L1 2808 6797 -73 * 29045 38 2 0 chrX 67921585 67926121 -94673809 + L1PA3 LINE L1 1610 6155 0 2973 68 10 0 chrX 67926093 67926507 -94673423 + L1PA4 LINE L1 5738 6155 0 * 24 0 0 0 chrX 67926510 67926534 -94673396 + AT_rich Low_complexity Low_complexity 1 24 0 32041 84 13 8 chrX 67926827 67932417 -94667513 + L1PA6 LINE L1 539 6154 0 366 82 41 0 chrX 67932752 67932825 -94667105 + L1MA2 LINE L1 6108 6183 -121 251 308 32 38 chrX 67932892 67933077 -94666853 - HERVR LTR ERV1 -3147 4245 4062 2117 118 21 3 chrX 67935247 67935578 -94664352 + L1PA14 LINE L1 5816 6152 -9 308 257 173 56 chrX 67938663 67938842 -94661088 + MIR SINE MIR 13 212 -50 262 309 181 27 chrX 67939438 67939587 -94660343 - MIR3 SINE MIR -2 206 35 233 239 56 28 chrX 67939965 67940036 -94659894 + MIR3 SINE MIR 135 207 -1 409 247 53 57 chrX 67940068 67940331 -94659599 - L1ME LINE L1 -385 5736 5475 * 4650 160 32 13 chrX 67940330 67940703 -94659227 - L1PB4 LINE L1 -1 7593 7228 243 0 0 0 chrX 67940703 67940730 -94659200 + (TA)n Simple_repeat Simple_repeat 1 27 0 4650 160 32 13 chrX 67940730 67941051 -94658879 - L1PB4 LINE L1 -366 7228 6914 2290 161 102 38 chrX 67941051 67941529 -94658401 - LTR22 LTR ERVK 0 509 1 4650 160 32 13 chrX 67941529 67941956 -94657974 - L1PB4 LINE L1 -680 6914 6457 1919 107 4 0 chrX 67941956 67942236 -94657694 - THE1A LTR MaLR 0 355 75 1118 161 18 5 chrX 67942237 67942460 -94657470 - L1PB4 LINE L1 -1201 6383 6158 9135 222 35 83 chrX 67942493 67944120 -94655810 - L1PB4 LINE L1 -1905 5679 3975 6184 102 19 25 chrX 67944120 67945255 -94654675 - L1PA11 LINE L1 0 6174 5034 293 0 27 0 chrX 67945255 67945292 -94654638 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2004 120 3 11 chrX 67945294 67945577 -94654353 - AluSq SINE Alu -32 281 1 6184 102 19 25 chrX 67945577 67946298 -94653632 - L1PA11 LINE L1 -1141 5033 4311 9135 222 35 83 chrX 67946298 67948510 -94651420 - L1PB4 LINE L1 -3609 3975 1281 2688 62 31 0 chrX 67948510 67948863 -94651067 + L1PA8 LINE L1 5809 6172 0 9135 222 35 83 chrX 67948863 67949734 -94650196 - L1PB4 LINE L1 -6303 1281 369 220 323 104 10 chrX 67949813 67949909 -94650021 + MER5B DNA MER1_type 1 105 -73 4799 139 0 56 chrX 67949909 67950789 -94649141 - THE1C-int LTR MaLR -746 834 4 1711 148 65 54 chrX 67950792 67951163 -94648767 - THE1C LTR MaLR 0 375 1 2186 128 0 0 chrX 67951382 67951680 -94648250 - AluSq SINE Alu -15 298 1 226 283 208 50 chrX 67952088 67952208 -94647722 + MIR3 SINE MIR 21 159 -49 2221 117 0 0 chrX 67952710 67953018 -94646912 + AluSc SINE Alu 1 308 -1 463 0 48 0 chrX 67954658 67954720 -94645210 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 307 222 22 22 chrX 67954722 67954812 -94645118 + L1MC3 LINE L1 6564 6653 -1132 187 306 0 32 chrX 67955332 67955394 -94644536 + MIR SINE MIR 88 147 -115 706 181 30 15 chrX 67955547 67955680 -94644250 - AluJo SINE Alu -177 135 1 3158 125 6 11 chrX 67955690 67956227 -94643703 - L1MA4A LINE L1 -11 6292 5759 1919 187 6 6 chrX 67956231 67956595 -94643335 - L1PB4 LINE L1 -4 6152 5789 207 0 0 0 chrX 67956595 67956618 -94643312 + (CA)n Simple_repeat Simple_repeat 2 24 0 39499 56 4 19 chrX 67956736 67962836 -94637094 - L1PA5 LINE L1 -147 6007 13 219 103 0 0 chrX 67962837 67962876 -94637054 + (T)n Simple_repeat Simple_repeat 1 39 0 1390 167 184 7 chrX 67962879 67963184 -94636746 - MSTA LTR MaLR -68 360 2 683 204 34 6 chrX 67963193 67963369 -94636561 - L1M4 LINE L1 -1156 4990 4810 6809 68 45 0 chrX 67963371 67964488 -94635442 - L1PA7 LINE L1 -2 7590 6451 22929 115 13 50 chrX 67964606 67968868 -94631062 - L1PA7 LINE L1 -1335 6249 1358 243 0 0 0 chrX 67968968 67968995 -94630935 + (CA)n Simple_repeat Simple_repeat 1 27 0 2575 127 6 52 chrX 67968999 67969319 -94630611 - L1P5 LINE L1 -376 5780 5488 1691 196 18 0 chrX 67969319 67969595 -94630335 + AluJo SINE Alu 1 281 -31 2575 127 6 52 chrX 67969595 67969754 -94630176 - L1P5 LINE L1 -668 5488 5323 2353 118 37 0 chrX 67969775 67970156 -94629774 - L1PA16 LINE L1 -3 6163 5769 232 118 215 97 chrX 67970171 67970264 -94629666 - Charlie2 DNA MER1_type -779 2083 1980 7753 183 21 5 chrX 67970282 67972787 -94627143 - L1PA8 LINE L1 0 6172 3516 343 160 40 0 chrX 67972780 67972855 -94627075 - L1 LINE L1 -1124 5022 4945 * 4554 190 20 96 chrX 67972851 67973862 -94626068 - L1P5 LINE L1 -880 5266 4350 1745 190 96 28 chrX 67973862 67974289 -94625641 + LOR1b LTR ERV1 6 461 0 4554 190 20 96 chrX 67974289 67975229 -94624701 - L1P5 LINE L1 -1796 4350 3340 397 289 0 63 chrX 67976283 67976425 -94623505 + MIR3 SINE MIR 63 195 -13 1504 126 0 0 chrX 67976774 67977021 -94622909 - L1PA7 LINE L1 -1280 4866 4620 6861 71 0 0 chrX 67977021 67978306 -94621624 + L1PA7 LINE L1 4865 6149 -5 1239 336 99 31 chrX 67978686 67979385 -94620545 - L3 LINE CR1 -106 1471 726 2467 169 44 9 chrX 67979400 67979926 -94620004 - L1MA9 LINE L1 0 6548 6005 4041 154 34 1 chrX 67979990 67980696 -94619234 - L1PA15 LINE L1 -1 6164 5436 4435 185 38 8 chrX 67980697 67982103 -94617827 - L1MA9 LINE L1 -527 6021 4565 3774 58 4 0 chrX 67982103 67982571 -94617359 - L1PA7 LINE L1 -1 6153 5684 4435 185 38 8 chrX 67982571 67982671 -94617259 - L1MA9 LINE L1 -1983 4565 4470 18087 174 31 25 chrX 67982674 67987499 -94612431 - L1MA1 LINE L1 0 7721 2827 2257 113 0 0 chrX 67987499 67987791 -94612139 + AluSg SINE Alu 5 296 -14 18087 174 31 25 chrX 67987791 67990620 -94609310 - L1MA1 LINE L1 -4894 2827 17 6082 224 62 31 chrX 67990627 67992738 -94607192 - L1MA9 LINE L1 -1900 4482 2308 * 6297 172 26 20 chrX 67992716 67994354 -94605576 - L1PB3 LINE L1 -3 6387 4736 2471 82 0 0 chrX 67994354 67994657 -94605273 - AluY SINE Alu -8 303 1 6297 172 26 20 chrX 67994657 67995406 -94604524 - L1PB3 LINE L1 -1654 4736 3993 579 198 35 19 chrX 67995600 67995887 -94604043 + LTR43 LTR ERV1 130 461 -141 3371 216 10 8 chrX 67995983 67996850 -94603080 - L1PB3 LINE L1 -2376 4486 3618 3277 210 118 8 chrX 67996851 67997833 -94602097 - L1PB3 LINE L1 -3687 3175 2091 8135 114 6 20 chrX 67997835 67998250 -94601680 - L1PA10 LINE L1 -1 6482 6063 2210 124 7 0 chrX 67998250 67998557 -94601373 - AluSc SINE Alu 0 309 1 8135 114 6 20 chrX 67998557 68000369 -94599561 - L1PA10 LINE L1 -420 6063 4167 2289 121 0 0 chrX 68000374 68000713 -94599217 - L1PA8 LINE L1 0 6172 5834 1373 161 47 0 chrX 68000714 68000969 -94598961 - L1PA10 LINE L1 -4892 983 717 778 202 3 6 chrX 68000976 68001284 -94598646 - L1PA10 LINE L1 -5374 501 1 5539 221 34 27 chrX 68001286 68001795 -94598135 - L1PB3 LINE L1 -4776 2087 1583 2226 99 0 3 chrX 68001795 68002099 -94597831 - AluY SINE Alu 0 303 1 5539 221 34 27 chrX 68002099 68004564 -94595366 - L1PB3 LINE L1 -5280 1583 37 807 235 6 0 chrX 68004594 68004764 -94595166 - FAM SINE Alu -6 43 1 603 260 21 4 chrX 68004791 68005026 -94594904 - L1MCc LINE L1 -4047 2896 2658 336 292 17 17 chrX 68005039 68005159 -94594771 + MSTD LTR MaLR 76 195 -201 5068 161 20 27 chrX 68005167 68006177 -94593753 + L1PA6 LINE L1 13 1015 -5131 24 67 0 0 chrX 68008445 68008490 -94591440 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chrX 68008698 68008724 -94591206 + AT_rich Low_complexity Low_complexity 1 26 0 15175 67 13 0 chrX 68008740 68010906 -94589024 + L1PA6 LINE L1 1001 3131 -3023 15175 77 10 0 chrX 68010906 68013824 -94586106 + L1PA6 LINE L1 3244 6154 0 3181 237 46 41 chrX 68013830 68014338 -94585592 - L1MCc LINE L1 -4321 2621 2117 474 226 0 0 chrX 68014338 68014422 -94585508 - AluS SINE Alu -228 84 1 3181 237 46 41 chrX 68014422 68016203 -94583727 - L1MCc LINE L1 -4825 2117 911 833 373 12 47 chrX 68016231 68016719 -94583211 - L3 LINE CR1 -891 686 216 2900 236 6 2 chrX 68016752 68017395 -94582535 + MER82 DNA MER2_type 2 647 -6 1843 171 45 29 chrX 68018460 68019003 -94580927 - MLT2A2 LTR ERVL 0 554 2 5326 97 21 13 chrX 68019948 68020721 -94579209 - MER4E LTR ERV1 0 779 1 2198 125 0 0 chrX 68022002 68022297 -94577633 + AluSx SINE Alu 1 295 -17 214 333 37 12 chrX 68022514 68022595 -94577335 + MIR SINE MIR 23 105 -157 2622 164 83 0 chrX 68022615 68023071 -94576859 - MER21B LTR ERV1 -369 494 1 2645 153 70 25 chrX 68023145 68023879 -94576051 - MER21B-int LTR ERV1 -55 4136 3314 2437 56 0 23 chrX 68023879 68024182 -94575748 + AluY SINE Alu 1 296 -15 2645 153 70 25 chrX 68024182 68024284 -94575646 - MER21B-int LTR ERV1 -877 3314 3218 18978 112 12 1 chrX 68024291 68026611 -94573319 - L1P LINE L1 -1482 4664 2302 188 33 0 33 chrX 68026611 68026641 -94573289 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 18978 112 12 1 chrX 68026641 68027306 -94572624 - L1P LINE L1 -3844 2302 1646 2655 124 16 23 chrX 68027306 68027743 -94572187 + MER4B-int LTR ERV1 3765 4198 -2560 1141 142 6 0 chrX 68027743 68027905 -94572025 + AluSx SINE Alu 1 163 -149 726 263 43 54 chrX 68027905 68028151 -94571779 - L1MCc LINE L1 -6053 370 123 2146 140 0 3 chrX 68028151 68028451 -94571479 - AluSx SINE Alu -13 299 1 726 263 43 54 chrX 68028451 68028521 -94571409 - L1MCc LINE L1 -6300 123 56 2307 122 0 0 chrX 68028521 68028833 -94571097 - AluSx SINE Alu 0 312 1 726 263 43 54 chrX 68028833 68028865 -94571065 - L1MCc LINE L1 -6367 56 25 304 308 31 115 chrX 68028940 68029200 -94570730 + L2 LINE L2 2644 2881 -433 1456 189 32 44 chrX 68029200 68029456 -94570474 - MER58B DNA MER1_type -2080 340 87 2148 127 3 0 chrX 68029456 68029755 -94570175 + AluSg SINE Alu 1 300 -10 1456 189 32 44 chrX 68029755 68029841 -94570089 - MER58B DNA MER1_type -2333 87 2 2218 77 7 14 chrX 68029914 68030247 -94569683 - AluY SINE Alu 0 331 1 485 310 92 33 chrX 68030247 68030550 -94569380 + L2 LINE L2 2989 3309 -4 2189 127 7 0 chrX 68031181 68031488 -94568442 + AluSg SINE Alu 2 310 0 488 43 43 0 chrX 68031494 68031563 -94568367 + (GGGAA)n Simple_repeat Simple_repeat 4 75 0 230 184 53 0 chrX 68031915 68031991 -94567939 + (TA)n Simple_repeat Simple_repeat 1 80 0 1927 194 88 22 chrX 68032333 68032797 -94567133 + MLT1D LTR MaLR 3 497 -8 1868 178 3 0 chrX 68032806 68033109 -94566821 + AluJb SINE Alu 1 304 -8 1834 171 42 34 chrX 68033274 68033659 -94566271 - MLT1B LTR MaLR -2 388 1 182 281 18 35 chrX 68034001 68034058 -94565872 - MIR3 SINE MIR -9 199 144 368 321 80 60 chrX 68034326 68034625 -94565305 - L2 LINE L2 -1231 2083 1779 1947 110 13 30 chrX 68034639 68034940 -94564990 + AluSq SINE Alu 1 296 -17 326 331 115 25 chrX 68035105 68035262 -94564668 - L2 LINE L2 0 3272 3102 1557 176 7 42 chrX 68035812 68036096 -94563834 - AluJo SINE Alu -17 295 22 2739 103 43 23 chrX 68036119 68036567 -94563363 - MER41A-int LTR ERV1 -2719 3961 3523 2084 128 0 0 chrX 68036567 68036855 -94563075 + AluSx SINE Alu 1 288 -24 2739 103 43 23 chrX 68036855 68037275 -94562655 - MER41A-int LTR ERV1 -3157 3523 1081 * 3551 142 52 36 chrX 68037263 68037970 -94561960 - MER41A-int LTR ERV1 -5322 624 1 2298 95 0 3 chrX 68038057 68038384 -94561546 - MER41A LTR ERV1 0 554 229 1916 95 79 6 chrX 68038686 68039049 -94560881 - LTR7 LTR ERV1 0 450 1 3466 104 14 14 chrX 68039049 68039606 -94560324 - HERVH LTR ERV1 0 7713 7157 * 12701 136 8 2 chrX 68039599 68041857 -94558073 - HERVH LTR ERV1 -1697 6016 3811 * 17172 147 4 21 chrX 68041856 68044358 -94555572 - HERVH LTR ERV1 -4127 3586 834 9605 44 4 1 chrX 68044358 68045426 -94554504 + MER11C LTR ERVK 1 1071 0 17172 147 4 21 chrX 68045426 68046247 -94553683 - HERVH LTR ERV1 -6879 834 1 2220 82 103 8 chrX 68046247 68046614 -94553316 - LTR7 LTR ERV1 0 450 1 4709 129 129 10 chrX 68046971 68047770 -94552160 + MER4D LTR ERV1 1 894 -9 1653 195 0 10 chrX 68047796 68048104 -94551826 - AluSx SINE Alu -7 305 1 1142 217 53 37 chrX 68048125 68048177 -94551753 - MER58B DNA MER1_type -2080 340 290 1192 207 14 5 chrX 68048177 68048394 -94551536 - MER20 DNA MER1_type 0 219 1 1142 217 53 37 chrX 68048394 68048640 -94551290 - MER58B DNA MER1_type -2130 290 37 676 176 48 26 chrX 68048674 68048857 -94551073 - MER33 DNA MER1_type -30 108 8 2982 167 19 6 chrX 68049477 68050003 -94549927 + Tigger6a DNA MER2_type 48 580 -503 805 144 6 89 chrX 68050567 68050747 -94549183 + L1PA15 LINE L1 6000 6164 -1 431 253 33 0 chrX 68051156 68051247 -94548683 + MER117 DNA MER1_type 4 97 -100 617 260 19 39 chrX 68051479 68051708 -94548222 - MLT1J2 LTR MaLR -196 213 15 2133 123 0 16 chrX 68053752 68054060 -94545870 + AluSq SINE Alu 1 303 -10 259 316 71 0 chrX 68054516 68054614 -94545316 + MIR SINE MIR 34 138 -70 180 0 0 0 chrX 68054920 68054940 -94544990 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2059 131 3 0 chrX 68056447 68056745 -94543185 + AluSx SINE Alu 1 299 -13 1926 122 20 14 chrX 68056875 68057169 -94542761 + AluSx SINE Alu 1 296 -16 2099 119 0 0 chrX 68057486 68057779 -94542151 + AluSx SINE Alu 1 293 -19 201 74 0 0 chrX 68060528 68060555 -94539375 + (T)n Simple_repeat Simple_repeat 1 27 0 209 306 0 0 chrX 68061404 68061453 -94538477 + L2 LINE L2 3192 3240 -32 213 39 0 0 chrX 68062198 68062224 -94537706 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 204 309 0 0 chrX 68062329 68062371 -94537559 + L2 LINE L2 3202 3243 -29 196 304 0 0 chrX 68062700 68062746 -94537184 + L2 LINE L2 3196 3241 -31 515 227 250 0 chrX 68062792 68062964 -94536966 + MER58C DNA MER1_type 1 215 0 274 203 30 80 chrX 68065563 68065696 -94534234 - MIR SINE MIR -25 237 53 191 339 102 0 chrX 68066571 68066689 -94533241 - MIR3 SINE MIR -8 200 71 2525 70 3 0 chrX 68066738 68067040 -94532890 + AluSp SINE Alu 2 304 -9 219 69 0 0 chrX 68067362 68067391 -94532539 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2298 79 17 0 chrX 68069282 68069572 -94530358 + AluSp SINE Alu 1 295 -18 1507 147 95 11 chrX 68070114 68070387 -94529543 - AluJo SINE Alu -16 296 1 261 259 37 49 chrX 68071356 68071437 -94528493 + HAL1 LINE L1 1 80 -2427 291 273 58 65 chrX 68071892 68071933 -94527997 - MIR3 SINE MIR -13 195 155 2095 112 3 26 chrX 68071933 68072238 -94527692 + AluSq SINE Alu 1 298 -15 291 273 58 65 chrX 68072238 68072350 -94527580 - MIR3 SINE MIR -53 155 43 23 0 0 0 chrX 68073059 68073082 -94526848 + AT_rich Low_complexity Low_complexity 1 23 0 5741 131 117 84 chrX 68073667 68074280 -94525650 + L1MC3 LINE L1 6452 7044 -741 306 208 52 31 chrX 68074280 68074376 -94525554 + MLT1F1 LTR MaLR 36 133 -434 5741 131 117 84 chrX 68074376 68074953 -94524977 + L1MC3 LINE L1 7044 7779 -6 241 232 0 0 chrX 68078431 68078487 -94521443 + (TATG)n Simple_repeat Simple_repeat 4 59 0 25 0 0 0 chrX 68079007 68079032 -94520898 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chrX 68079396 68079423 -94520507 + AT_rich Low_complexity Low_complexity 1 27 0 772 113 139 0 chrX 68084634 68084749 -94515181 - FLAM_C SINE Alu -2 131 1 295 115 35 46 chrX 68087053 68087140 -94512790 + (CTGGGG)n Simple_repeat Simple_repeat 5 90 0 291 202 0 0 chrX 68087912 68088006 -94511924 + G-rich Low_complexity Low_complexity 1 94 0 246 269 30 0 chrX 68090509 68090576 -94509354 - MIR SINE MIR -112 150 82 2379 90 0 0 chrX 68091447 68091747 -94508183 + AluSx SINE Alu 1 300 -12 229 250 88 44 chrX 68091751 68091887 -94508043 + L1M4 LINE L1 5076 5217 -929 244 191 111 16 chrX 68092649 68092712 -94507218 - MIR SINE MIR -79 129 61 251 323 82 44 chrX 68093161 68093564 -94506366 + L3 LINE CR1 1095 1570 -7 1714 166 3 24 chrX 68093763 68094059 -94505871 + AluJo SINE Alu 1 290 -22 2232 94 31 0 chrX 68094086 68094373 -94505557 + AluSc SINE Alu 1 296 -13 804 246 5 5 chrX 68094377 68094576 -94505354 + L1M4 LINE L1 981 1179 -5363 4974 153 48 49 chrX 68094641 68095475 -94504455 - L1MA7 LINE L1 -3 6288 5454 2079 125 0 52 chrX 68095475 68095803 -94504127 - AluSx SINE Alu -1 311 1 2030 140 0 13 chrX 68095806 68096106 -94503824 - AluSx SINE Alu -16 296 1 4974 153 48 49 chrX 68096106 68096171 -94503759 - L1MA7 LINE L1 -839 5452 5388 2283 118 0 0 chrX 68096171 68096477 -94503453 - AluSx SINE Alu -6 306 1 4974 153 48 49 chrX 68096477 68096796 -94503134 - L1MA7 LINE L1 -903 5388 5058 2660 266 50 20 chrX 68096837 68097919 -94502011 - L1M2 LINE L1 -4163 2686 1573 2538 78 0 0 chrX 68099233 68099542 -94500388 + AluSx SINE Alu 1 309 -3 680 344 45 24 chrX 68099543 68099965 -94499965 - L1M2 LINE L1 -5710 1069 639 1462 229 34 19 chrX 68099966 68100437 -94499493 + L1M4 LINE L1 1162 1639 -4903 5558 218 106 49 chrX 68100446 68101829 -94498101 + L1M3e LINE L1 493 1795 -5312 2199 78 0 44 chrX 68101829 68102148 -94497782 + AluSg1 SINE Alu 1 306 0 5558 218 106 49 chrX 68102148 68102233 -94497697 + L1M3e LINE L1 1795 1874 -5233 1782 149 14 24 chrX 68102233 68102529 -94497401 + AluJb SINE Alu 6 298 -14 5558 218 106 49 chrX 68102529 68102813 -94497117 + L1M3e LINE L1 1874 2140 -4967 2403 97 0 0 chrX 68102813 68103111 -94496819 + AluSq SINE Alu 1 298 -15 5558 218 106 49 chrX 68103111 68103505 -94496425 + L1M3e LINE L1 2140 2778 -4329 2152 113 0 3 chrX 68103509 68103817 -94496113 + AluSx SINE Alu 1 307 0 1294 225 34 74 chrX 68103832 68103920 -94496010 + L1M1 LINE L1 3091 3181 -4384 1500 162 15 19 chrX 68103920 68104185 -94495745 + AluJo SINE Alu 33 296 -16 1294 225 34 74 chrX 68104185 68104291 -94495639 + L1M1 LINE L1 3181 3290 -4275 2121 123 7 13 chrX 68104291 68104599 -94495331 - AluSx SINE Alu 0 312 7 1294 225 34 74 chrX 68104599 68104750 -94495180 + L1M1 LINE L1 3290 3445 -4120 1641 201 0 10 chrX 68104750 68105059 -94494871 + AluJo SINE Alu 1 306 0 1294 225 34 74 chrX 68105059 68105521 -94494409 + L1M1 LINE L1 3445 3878 -3687 2150 133 0 0 chrX 68105521 68105814 -94494116 + AluSx SINE Alu 1 293 -19 534 210 0 0 chrX 68105815 68105934 -94493996 + (TA)n Simple_repeat Simple_repeat 1 119 0 246 133 0 0 chrX 68105937 68105982 -94493948 - LTR66 LTR ERVL -172 438 394 648 258 0 0 chrX 68105982 68106141 -94493789 + L1M1 LINE L1 3870 4028 -3537 2598 153 9 19 chrX 68106144 68106568 -94493362 + MER54B LTR ERVL 1 420 -373 2249 108 0 0 chrX 68106569 68106857 -94493073 + AluSx SINE Alu 1 288 -24 331 140 0 0 chrX 68106874 68106931 -94492999 + MER54B LTR ERVL 737 793 0 1704 205 63 95 chrX 68106996 68107586 -94492344 - HERVL74 LTR ERVL -534 5151 4581 950 156 13 0 chrX 68107566 68107720 -94492210 - HERVL74 LTR ERVL -1612 4073 3918 * 865 170 6 25 chrX 68107723 68107882 -94492048 - HERVL74 LTR ERVL -2043 3642 3487 628 197 15 45 chrX 68107875 68107953 -94491977 - HERVL74 LTR ERVL -2348 3337 3263 * 2344 110 0 3 chrX 68107953 68108263 -94491667 + AluSq SINE Alu 2 310 -3 628 197 15 45 chrX 68108263 68108316 -94491614 - HERVL74 LTR ERVL -2422 3263 3210 2393 83 3 6 chrX 68108329 68108641 -94491289 - AluSp SINE Alu 0 313 3 2056 137 7 0 chrX 68108647 68108946 -94490984 - AluSx SINE Alu -9 303 3 896 198 139 10 chrX 68108947 68109149 -94490781 - HERVL74 LTR ERVL -3219 2466 2239 784 194 0 0 chrX 68109151 68109285 -94490645 - HERVL74 LTR ERVL -3568 2117 1984 1387 202 11 39 chrX 68109285 68109609 -94490321 + L1M2 LINE L1 2528 2843 -4006 2424 89 0 3 chrX 68109609 68109912 -94490018 + AluSp SINE Alu 1 302 -11 1387 202 11 39 chrX 68109912 68109949 -94489981 + L1M2 LINE L1 2843 2879 -3970 2810 203 53 20 chrX 68109953 68110069 -94489861 + L1M2 LINE L1 2955 3066 -3782 1252 184 100 15 chrX 68110069 68110330 -94489600 + AluJo SINE Alu 1 283 -29 2810 203 53 20 chrX 68110330 68110435 -94489495 + L1M2 LINE L1 3066 3166 -3682 2194 72 21 4 chrX 68110435 68110753 -94489177 + AluSp SINE Alu 1 323 0 2810 203 53 20 chrX 68110753 68111176 -94488754 + L1M2 LINE L1 3166 3622 -3226 1357 294 32 21 chrX 68111184 68111659 -94488271 + L1PB4 LINE L1 10 1170 -6415 2079 103 15 0 chrX 68112458 68112730 -94487200 - AluSx SINE Alu -36 276 1 474 262 23 143 chrX 68114488 68114930 -94485000 + L1PB4 LINE L1 1416 1804 -5781 489 314 48 34 chrX 68115101 68115308 -94484622 + L1PB4 LINE L1 1735 1944 -5641 635 228 90 6 chrX 68115365 68115532 -94484398 + L1PB4 LINE L1 2175 2355 -5229 228 130 43 0 chrX 68115533 68115579 -94484351 + L1MC4 LINE L1 6656 6703 -1339 219 220 0 0 chrX 68115582 68115632 -94484298 + (TA)n Simple_repeat Simple_repeat 1 50 0 272 292 0 0 chrX 68115639 68115728 -94484202 + L1MC4 LINE L1 6614 6702 -1340 229 261 0 22 chrX 68115731 68115823 -94484107 + L1MC4 LINE L1 6614 6703 -1339 636 222 0 0 chrX 68115832 68116012 -94483918 + (TA)n Simple_repeat Simple_repeat 1 180 0 4699 165 79 103 chrX 68116015 68116488 -94483442 + L1PB4 LINE L1 2416 2899 -4685 691 193 0 22 chrX 68116488 68116623 -94483307 - FLAM_C SINE Alu 0 133 2 4699 165 79 103 chrX 68116623 68116871 -94483059 + L1PB4 LINE L1 2899 3151 -4433 2280 121 0 0 chrX 68116871 68117177 -94482753 - AluSg SINE Alu -4 306 1 4699 165 79 103 chrX 68117177 68117802 -94482128 + L1PB4 LINE L1 3151 3730 -3854 3287 60 7 0 chrX 68117800 68118290 -94481640 - L1PA7 LINE L1 -480 5674 5182 * 3952 43 2 0 chrX 68118290 68118757 -94481173 + L1PA7 LINE L1 5685 6152 -2 2146 95 0 63 chrX 68118761 68118898 -94481032 + AluSx SINE Alu 1 145 -192 5772 87 32 19 chrX 68118898 68120079 -94479851 + SVA Other Other 16 1047 -339 2146 95 0 63 chrX 68120079 68120294 -94479636 + AluSx SINE Alu 145 337 0 8322 219 16 36 chrX 68120296 68120618 -94479312 + L1PB4 LINE L1 3720 4047 -3537 2428 97 0 0 chrX 68120618 68120929 -94479001 + AluSq SINE Alu 1 311 -2 8322 219 16 36 chrX 68120929 68121369 -94478561 + L1PB4 LINE L1 4047 4494 -3090 2517 72 9 3 chrX 68121369 68121703 -94478227 + L1PA13 LINE L1 5828 6163 0 8322 219 16 36 chrX 68121703 68122388 -94477542 + L1PB4 LINE L1 4494 5191 -2393 2262 73 42 0 chrX 68122388 68122677 -94477253 + AluY SINE Alu 1 301 -10 8322 219 16 36 chrX 68122677 68123287 -94476643 + L1PB4 LINE L1 5191 5812 -1772 1867 141 37 0 chrX 68123287 68123585 -94476345 + AluSg SINE Alu 1 309 -1 8322 219 16 36 chrX 68123585 68123597 -94476333 + L1PB4 LINE L1 5812 5823 -1761 2217 128 0 0 chrX 68123597 68123894 -94476036 + AluSx SINE Alu 1 297 -15 8322 219 16 36 chrX 68123894 68124071 -94475859 + L1PB4 LINE L1 5823 5924 -1660 2060 85 3 44 chrX 68124073 68124367 -94475563 + AluY SINE Alu 1 282 -29 28833 25 0 1 chrX 68124368 68128531 -94471399 + L1PA2 LINE L1 1997 6154 -1 1762 212 14 14 chrX 68128540 68128552 -94471378 + L1PB4 LINE L1 5915 5926 -1658 2266 118 3 0 chrX 68128552 68128856 -94471074 + AluSx SINE Alu 1 305 -7 1762 212 14 14 chrX 68128856 68129273 -94470657 + L1PB4 LINE L1 5925 6344 -1240 841 212 28 0 chrX 68129274 68129453 -94470477 + L1PB4 LINE L1 6939 7122 -472 24230 110 18 29 chrX 68129458 68132939 -94466991 + L1P3 LINE L1 1 3519 -2942 2207 126 0 0 chrX 68132939 68133233 -94466697 + AluSg SINE Alu 2 295 -15 24230 110 18 29 chrX 68133233 68134506 -94465424 + L1P3 LINE L1 3519 4786 -1675 7283 54 1 0 chrX 68134506 68136065 -94463865 + L1PA7 LINE L1 4584 6143 -11 24230 110 18 29 chrX 68136065 68136089 -94463841 + L1P3 LINE L1 4786 4809 -1652 1972 127 11 0 chrX 68136093 68136369 -94463561 + AluSx SINE Alu 3 281 -31 1947 134 0 7 chrX 68136464 68136739 -94463191 + AluSg SINE Alu 2 274 -36 234 0 0 0 chrX 68136880 68136906 -94463024 + (CA)n Simple_repeat Simple_repeat 2 27 0 1964 107 28 28 chrX 68136908 68137198 -94462732 + AluSp SINE Alu 2 291 -22 2365 201 9 2 chrX 68137218 68137680 -94462250 + L1PB4 LINE L1 7116 7580 -14 2131 152 38 31 chrX 68137686 68137739 -94462191 + L1M1 LINE L1 5287 5338 -965 2298 114 0 0 chrX 68137739 68138047 -94461883 + AluSg SINE Alu 1 308 -2 2131 152 38 31 chrX 68138047 68138114 -94461816 + L1M1 LINE L1 5338 5403 -900 2160 96 0 30 chrX 68138114 68138415 -94461515 + AluSg SINE Alu 1 292 -18 2131 152 38 31 chrX 68138415 68138738 -94461192 + L1M1 LINE L1 5403 5721 -582 * 3295 163 26 58 chrX 68138724 68138778 -94461152 - L1 LINE L1 -1591 4555 4501 312 27 0 0 chrX 68138778 68138815 -94461115 + (TG)n Simple_repeat Simple_repeat 2 38 0 3295 163 26 58 chrX 68138815 68138994 -94460936 - L1 LINE L1 -1645 4501 4318 2145 108 7 7 chrX 68138994 68139290 -94460640 - AluSq SINE Alu -17 296 1 3295 163 26 58 chrX 68139290 68139643 -94460287 - L1 LINE L1 -1828 4318 3995 2375 90 7 0 chrX 68139643 68139953 -94459977 - AluSp SINE Alu -1 312 1 3295 163 26 58 chrX 68139953 68140118 -94459812 - L1 LINE L1 -2151 3995 3826 2168 105 7 20 chrX 68140164 68140459 -94459471 - AluSx SINE Alu -21 291 1 300 198 47 19 chrX 68140489 68140547 -94459383 + L1 LINE L1 4436 4500 -1646 351 0 0 0 chrX 68140547 68140586 -94459344 + (CA)n Simple_repeat Simple_repeat 2 40 0 300 198 47 19 chrX 68140586 68140633 -94459297 + L1 LINE L1 4500 4544 -1602 2287 116 0 0 chrX 68140785 68141086 -94458844 - AluSg SINE Alu -9 301 1 1621 140 32 14 chrX 68141208 68141487 -94458443 + MER101B LTR ERV1 1 284 -286 1736 186 66 38 chrX 68141487 68141531 -94458399 - MSTB LTR MaLR -1 425 384 2500 67 0 0 chrX 68141531 68141829 -94458101 + AluY SINE Alu 1 298 -13 1736 186 66 38 chrX 68141829 68142149 -94457781 - MSTB LTR MaLR -42 384 51 2597 111 17 6 chrX 68142150 68142510 -94457420 + THE1B LTR MaLR 1 364 0 10397 102 30 36 chrX 68142510 68144023 -94455907 + THE1B-int LTR MaLR 1 1503 -77 1285 237 40 16 chrX 68144021 68144401 -94455529 - L1M4 LINE L1 -1547 4599 4211 * 6946 166 31 66 chrX 68144427 68144881 -94455049 - L1PA16 LINE L1 -300 5866 5398 2171 117 0 0 chrX 68144881 68145179 -94454751 - AluSc SINE Alu -11 298 1 6946 166 31 66 chrX 68145179 68145865 -94454065 - L1PA16 LINE L1 -768 5398 4690 774 95 0 0 chrX 68145865 68145970 -94453960 - AluY SINE Alu 0 311 207 6946 166 31 66 chrX 68145970 68146523 -94453407 - L1PA16 LINE L1 -1476 4690 4176 2339 90 6 6 chrX 68146523 68146834 -94453096 - AluY SINE Alu 0 311 1 6946 166 31 66 chrX 68146834 68147325 -94452605 - L1PA16 LINE L1 -1990 4176 3670 240 333 88 10 chrX 68147522 68147624 -94452306 + L2 LINE L2 3163 3272 0 2044 155 0 0 chrX 68147928 68148224 -94451706 - AluJb SINE Alu -16 296 1 2338 110 3 0 chrX 68148244 68148554 -94451376 - AluSp SINE Alu -2 311 1 2284 107 0 25 chrX 68149110 68149429 -94450501 - AluSx SINE Alu -1 311 1 1019 203 112 2 chrX 68149477 68149722 -94450208 - L1MB5 LINE L1 0 6178 5908 2346 128 100 2 chrX 68149723 68150122 -94449808 - Tigger2 DNA MER2_type -1 2717 2280 350 154 62 0 chrX 68150120 68150185 -94449745 - Tigger2 DNA MER2_type -2649 69 1 * 747 173 80 7 chrX 68150186 68150336 -94449594 - L1MB5 LINE L1 -266 5908 5748 2264 67 27 20 chrX 68150361 68150660 -94449270 - AluSg SINE Alu -9 301 1 1442 194 107 20 chrX 68150663 68150687 -94449243 + L1MDa LINE L1 2188 2209 -4331 1862 172 0 0 chrX 68150687 68150983 -94448947 + AluJb SINE Alu 1 296 -16 1442 194 107 20 chrX 68150983 68151382 -94448548 + L1MDa LINE L1 2209 2673 -3867 2196 113 0 3 chrX 68151382 68151682 -94448248 + AluSx SINE Alu 1 299 -13 1442 194 107 20 chrX 68151682 68151868 -94448062 + L1MDa LINE L1 2673 2841 -3699 1981 128 3 3 chrX 68152487 68152776 -94447154 + AluSx SINE Alu 18 306 -6 1523 121 40 14 chrX 68153240 68153463 -94446467 + MER30 DNA MER1_type 2 230 0 254 327 124 13 chrX 68153467 68153620 -94446310 + MIR3 SINE MIR 21 190 -18 1852 174 3 10 chrX 68154166 68154302 -94445628 + AluJb SINE Alu 1 136 -176 2320 100 0 0 chrX 68154302 68154602 -94445328 + AluSg SINE Alu 1 300 -10 1852 174 3 10 chrX 68154602 68154770 -94445160 + AluJb SINE Alu 136 303 -9 22 0 0 0 chrX 68154975 68154997 -94444933 + AT_rich Low_complexity Low_complexity 1 22 0 2228 86 7 0 chrX 68155610 68155900 -94444030 - AluSx SINE Alu -20 292 1 201 279 88 59 chrX 68155957 68156093 -94443837 - MIR3 SINE MIR -57 151 12 226 281 56 45 chrX 68156121 68156210 -94443720 + L2 LINE L2 3139 3228 -44 224 309 32 71 chrX 68156321 68156447 -94443483 - L2 LINE L2 -9 3263 3143 2738 212 9 48 chrX 68158496 68158560 -94441370 + MLT1E3 LTR MaLR 5 70 -554 2073 188 95 35 chrX 68158560 68159022 -94440908 - LTR2B LTR ERV1 0 490 1 2738 212 9 48 chrX 68159022 68159602 -94440328 + MLT1E3 LTR MaLR 70 624 0 1984 201 98 23 chrX 68159894 68160333 -94439597 + MLT2B1 LTR ERVL 1 472 -48 338 164 0 16 chrX 68160335 68160396 -94439534 - MLT2B1 LTR ERVL -106 414 355 235 118 0 0 chrX 68160387 68160421 -94439509 + MLT2B1 LTR ERVL 480 513 -2 * 2364 84 3 16 chrX 68160609 68160918 -94439012 + AluSp SINE Alu 1 305 -8 1017 215 36 5 chrX 68161017 68161236 -94438694 + MIR SINE MIR 5 230 -32 879 177 0 0 chrX 68161745 68161875 -94438055 + FLAM_A SINE Alu 1 130 -3 2296 103 3 0 chrX 68161922 68162232 -94437698 + AluSq SINE Alu 1 311 -2 2350 181 47 2 chrX 68162260 68162668 -94437262 - MSTB LTR MaLR 0 426 1 2346 94 0 0 chrX 68162797 68163094 -94436836 + AluSx SINE Alu 1 297 -15 223 200 0 0 chrX 68163722 68163770 -94436160 + MIR SINE MIR 107 153 -109 7456 154 25 31 chrX 68163899 68164607 -94435323 - L1MA8 LINE L1 -4 7706 6996 2525 43 0 13 chrX 68164607 68164909 -94435021 - AluY SINE Alu -13 298 1 7456 154 25 31 chrX 68164909 68165124 -94434806 - L1MA8 LINE L1 -714 6996 6781 1958 141 20 16 chrX 68165124 68165430 -94434500 - AluSx SINE Alu -5 307 1 7456 154 25 31 chrX 68165430 68165957 -94433973 - L1MA8 LINE L1 -929 6781 6253 2430 72 3 7 chrX 68165957 68166262 -94433668 + AluSp SINE Alu 1 304 -9 7456 154 25 31 chrX 68166262 68166402 -94433528 - L1MA8 LINE L1 -1457 6253 6114 2321 99 3 3 chrX 68166402 68166705 -94433225 - AluSp SINE Alu -10 303 1 7456 154 25 31 chrX 68166705 68166946 -94432984 - L1MA8 LINE L1 -1596 6114 5873 2404 75 7 7 chrX 68166946 68167252 -94432678 - AluSx SINE Alu -6 306 1 7456 154 25 31 chrX 68167252 68167869 -94432061 - L1MA8 LINE L1 -1837 5873 5270 2302 80 0 3 chrX 68167907 68168216 -94431714 + AluSp SINE Alu 1 308 0 1927 244 35 86 chrX 68168246 68168492 -94431438 - L1MA8 LINE L1 -4291 3274 3017 2140 136 0 0 chrX 68168492 68168800 -94431130 - AluSx SINE Alu -4 308 1 1927 244 35 86 chrX 68168800 68168850 -94431080 - L1MA8 LINE L1 -4548 3017 2966 2342 97 0 0 chrX 68168850 68169148 -94430782 - AluSx SINE Alu -14 298 1 1927 244 35 86 chrX 68169148 68169365 -94430565 - L1MA8 LINE L1 -4599 2966 2740 2191 105 7 0 chrX 68169365 68169659 -94430271 + AluSp SINE Alu 3 298 -15 1927 244 35 86 chrX 68169659 68169710 -94430220 - L1MA8 LINE L1 -4825 2740 2688 2144 84 7 24 chrX 68169710 68170006 -94429924 - AluSp SINE Alu -22 291 1 1927 244 35 86 chrX 68170006 68170176 -94429754 - L1MA8 LINE L1 -4877 2688 2585 2357 100 0 0 chrX 68170176 68170486 -94429444 - AluSx SINE Alu -2 310 1 1927 244 35 86 chrX 68170486 68170612 -94429318 - L1MA8 LINE L1 -4980 2585 2454 2263 84 0 0 chrX 68170923 68171208 -94428722 + AluSx SINE Alu 15 299 -13 2308 101 0 7 chrX 68171299 68171606 -94428324 + AluSx SINE Alu 1 305 -7 266 346 8 77 chrX 68171687 68171742 -94428188 + L2 LINE L2 3136 3193 -79 2309 109 3 0 chrX 68171742 68172046 -94427884 - AluSx SINE Alu -5 307 3 266 346 8 77 chrX 68172046 68172120 -94427810 + L2 LINE L2 3193 3256 -16 1841 157 47 3 chrX 68172151 68172450 -94427480 + AluJb SINE Alu 1 312 0 2200 127 3 7 chrX 68172485 68172793 -94427137 + AluSx SINE Alu 1 307 -5 1817 163 86 0 chrX 68172793 68173119 -94426811 - L1M4 LINE L1 -380 5804 5451 668 109 73 36 chrX 68173119 68173256 -94426674 - MER96B DNA MER1_type? -86 331 190 1816 184 3 3 chrX 68173477 68173787 -94426143 + AluJb SINE Alu 1 310 -2 2683 134 8 64 chrX 68173927 68174000 -94425930 + L1PA16 LINE L1 5717 5792 -374 2384 80 0 13 chrX 68174000 68174313 -94425617 + AluSc SINE Alu 1 309 0 2683 134 8 64 chrX 68174313 68174708 -94425222 + L1PA16 LINE L1 5792 6159 -7 1209 214 53 41 chrX 68174907 68175249 -94424681 + MLT2C1 LTR ERVL 1 346 -51 2128 86 4 0 chrX 68175366 68175633 -94424297 - AluSp SINE Alu -45 268 1 1916 125 3 46 chrX 68175642 68175945 -94423985 - AluSx SINE Alu -22 290 1 25 0 0 0 chrX 68176131 68176156 -94423774 + AT_rich Low_complexity Low_complexity 1 25 0 250 215 35 97 chrX 68176276 68176420 -94423510 + L1MB7 LINE L1 2337 2471 -4378 2419 70 3 3 chrX 68176434 68176732 -94423198 + AluSq SINE Alu 1 298 -15 565 216 5 155 chrX 68176732 68176945 -94422985 + L1MB7 LINE L1 4784 4964 -1884 21 57 0 0 chrX 68177013 68177048 -94422882 + AT_rich Low_complexity Low_complexity 1 35 0 1123 193 40 5 chrX 68177049 68177251 -94422679 - MER2 DNA MER2_type -135 210 2 4670 174 63 60 chrX 68177271 68178040 -94421890 + L1MB7 LINE L1 4965 5730 -1156 1760 156 13 29 chrX 68178040 68178355 -94421575 + AluJb SINE Alu 3 312 0 2321 82 0 19 chrX 68178362 68178645 -94421285 + AluSx SINE Alu 1 279 -33 266 85 0 21 chrX 68178645 68178692 -94421238 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2321 82 0 19 chrX 68178692 68178726 -94421204 + AluSx SINE Alu 279 312 0 4670 174 63 60 chrX 68178726 68179709 -94420221 + L1MB7 LINE L1 5735 6727 -159 2484 85 0 0 chrX 68179709 68180014 -94419916 - AluSx SINE Alu -7 305 1 4670 174 63 60 chrX 68180014 68180154 -94419776 + L1MB7 LINE L1 6727 6865 -21 260 27 27 0 chrX 68180512 68180549 -94419381 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2115 122 0 0 chrX 68180552 68180831 -94419099 - AluSx SINE Alu -33 279 1 216 0 0 0 chrX 68181064 68181088 -94418842 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2354 94 0 22 chrX 68181816 68182135 -94417795 + AluSx SINE Alu 1 312 0 2034 90 65 7 chrX 68182197 68182476 -94417454 - AluSx SINE Alu -16 296 2 2104 112 26 3 chrX 68183328 68183633 -94416297 + AluSx SINE Alu 1 312 0 588 103 0 0 chrX 68183680 68183758 -94416172 - Alu SINE Alu -9 302 225 860 100 18 82 chrX 68183894 68184064 -94415866 - AluSg/x SINE Alu -19 293 135 289 338 59 0 chrX 68184256 68184392 -94415538 + MIR SINE MIR 63 206 -56 705 281 123 35 chrX 68185611 68185977 -94413953 + L1MC4a LINE L1 5523 5920 -1888 1226 116 12 0 chrX 68186357 68186530 -94413400 - AluSq SINE Alu -9 304 130 31 0 0 0 chrX 68186530 68186561 -94413369 + AT_rich Low_complexity Low_complexity 1 31 0 189 74 0 0 chrX 68186561 68186588 -94413342 + (GA)n Simple_repeat Simple_repeat 2 28 0 1968 132 4 0 chrX 68186590 68186871 -94413059 - AluSx SINE Alu -30 282 1 2390 86 3 3 chrX 68187379 68187692 -94412238 - AluSp SINE Alu 0 313 1 2600 55 0 3 chrX 68188583 68188892 -94411038 - AluY SINE Alu -3 308 1 281 85 0 23 chrX 68188946 68188995 -94410935 + AluSc SINE Alu 253 293 -6 637 284 61 61 chrX 68189155 68189409 -94410521 - L1MC5 LINE L1 -48 7913 7657 2435 80 0 0 chrX 68189409 68189708 -94410222 - AluSq SINE Alu -14 299 1 637 284 61 61 chrX 68189708 68189911 -94410019 - L1MC5 LINE L1 -303 7658 7456 2419 72 0 0 chrX 68190328 68190620 -94409310 - AluSc SINE Alu -17 292 1 1019 203 112 2 chrX 68190668 68190913 -94409017 - L1MB5 LINE L1 0 6178 5908 2346 128 100 2 chrX 68190914 68191313 -94408617 - Tigger2 DNA MER2_type -1 2717 2280 350 154 62 0 chrX 68191311 68191376 -94408554 - Tigger2 DNA MER2_type -2649 69 1 * 747 173 80 7 chrX 68191377 68191527 -94408403 - L1MB5 LINE L1 -266 5908 5748 2264 67 27 20 chrX 68191552 68191851 -94408079 - AluSg SINE Alu -9 301 1 1717 206 97 17 chrX 68191854 68191878 -94408052 + L1MD1 LINE L1 2188 2209 -4331 1862 172 0 0 chrX 68191878 68192174 -94407756 + AluJb SINE Alu 1 296 -16 1717 206 97 17 chrX 68192174 68192573 -94407357 + L1MD1 LINE L1 2209 2575 -3965 2196 113 0 3 chrX 68192573 68192873 -94407057 + AluSx SINE Alu 1 299 -13 1717 206 97 17 chrX 68192873 68193277 -94406653 + L1MD1 LINE L1 2575 3074 -3466 230 57 75 0 chrX 68193290 68193343 -94406587 + (TA)n Simple_repeat Simple_repeat 1 57 0 2322 73 0 3 chrX 68193343 68193631 -94406299 - AluSq SINE Alu -26 287 1 4229 216 56 45 chrX 68193636 68194255 -94405675 + L1MD1 LINE L1 4122 4732 -1904 2136 88 3 55 chrX 68194255 68194562 -94405368 - AluSc SINE Alu -16 293 3 4229 216 56 45 chrX 68194562 68195795 -94404135 + L1MD1 LINE L1 4732 5998 -638 2250 97 7 13 chrX 68195795 68195931 -94403999 + AluSp SINE Alu 1 136 -177 2261 86 14 0 chrX 68195931 68196223 -94403707 + AluY SINE Alu 1 296 -15 2250 97 7 13 chrX 68196223 68196396 -94403534 + AluSp SINE Alu 136 308 -5 4229 216 56 45 chrX 68196396 68196727 -94403203 + L1MD1 LINE L1 5998 6324 -312 1296 102 0 0 chrX 68196727 68196904 -94403026 - AluSg/x SINE Alu -6 303 127 1616 94 0 0 chrX 68196904 68197107 -94402823 - AluSg SINE Alu -107 203 1 2149 97 17 3 chrX 68197255 68197553 -94402377 - AluSg SINE Alu -8 302 1 869 211 79 22 chrX 68197573 68197801 -94402129 + Charlie1a DNA MER1_type 49 289 -1166 749 155 12 87 chrX 68197804 68197965 -94401965 + FRAM SINE Alu 4 152 -24 2014 216 58 7 chrX 68197965 68198512 -94401418 + Charlie1a DNA MER1_type 276 850 -605 2460 84 0 3 chrX 68198512 68198823 -94401107 + AluSx SINE Alu 1 310 -2 4324 216 68 17 chrX 68198823 68199697 -94400233 - L1MC/D LINE L1 -702 5922 5094 2369 106 0 0 chrX 68199697 68200000 -94399930 - AluSx SINE Alu -8 304 2 4324 216 68 17 chrX 68200000 68200382 -94399548 - L1MC/D LINE L1 -1530 5094 4733 204 40 0 0 chrX 68200382 68200407 -94399523 + (TG)n Simple_repeat Simple_repeat 2 26 0 2357 63 3 0 chrX 68200414 68200700 -94399230 - AluSp SINE Alu -26 287 1 4324 216 68 17 chrX 68200700 68200946 -94398984 - L1MC/D LINE L1 -1896 4728 4496 2372 102 0 0 chrX 68200946 68201250 -94398680 - AluSq SINE Alu -9 304 1 4324 216 68 17 chrX 68201250 68201508 -94398422 - L1MC/D LINE L1 -2128 4496 4064 6176 151 129 48 chrX 68201575 68202460 -94397470 - L1MC/D LINE L1 -4188 2238 1425 2374 94 0 0 chrX 68202460 68202759 -94397171 - AluSg1 SINE Alu -10 299 1 6176 151 129 48 chrX 68202759 68203543 -94396387 - L1MC/D LINE L1 -5001 1425 435 2643 141 65 59 chrX 68203543 68203694 -94396236 - LTR1 LTR ERV1 0 785 636 2242 108 3 0 chrX 68203694 68203990 -94395940 - AluSg SINE Alu -13 297 1 2643 141 65 59 chrX 68203990 68204427 -94395503 - LTR1 LTR ERV1 -149 636 194 309 135 0 0 chrX 68204427 68204479 -94395451 - LTR1 LTR ERV1 -551 234 183 2080 109 0 45 chrX 68204480 68204791 -94395139 - AluSx SINE Alu -14 298 2 381 198 0 0 chrX 68204794 68204885 -94395045 - L1M4b LINE L1 -5306 1553 1463 2693 181 25 4 chrX 68204915 68205428 -94394502 - MER68 LTR ERV1 -28 534 11 2682 232 49 38 chrX 68205434 68205661 -94394269 - L1M4b LINE L1 -5396 1463 1240 2386 84 3 3 chrX 68205661 68205972 -94393958 - AluSq SINE Alu -2 311 1 2682 232 49 38 chrX 68205972 68206629 -94393301 - L1M4b LINE L1 -5619 1240 570 905 172 38 11 chrX 68207668 68207854 -94392076 - L1MD3 LINE L1 -302 7693 7503 467 290 7 0 chrX 68207855 68208128 -94391802 + (CATA)n Simple_repeat Simple_repeat 1 275 0 459 290 0 0 chrX 68208130 68208292 -94391638 + (TA)n Simple_repeat Simple_repeat 1 162 0 907 204 55 16 chrX 68208292 68208590 -94391340 - L1MD3 LINE L1 -487 7508 6989 832 275 37 2 chrX 68208604 68208942 -94390988 - L1MD3 LINE L1 -902 6897 6533 924 192 0 0 chrX 68208984 68209140 -94390790 - AluJo/FRAM SINE Alu -20 292 137 1251 94 0 0 chrX 68209143 68209303 -94390627 - AluSg/x SINE Alu -5 307 148 695 122 0 9 chrX 68209404 68209511 -94390419 + AluSg/x SINE Alu 199 304 -8 2178 96 0 4 chrX 68209515 68209816 -94390114 + AluSg SINE Alu 3 302 0 303 288 85 26 chrX 68209816 68209969 -94389961 - L1MC4a LINE L1 -1297 6511 6350 2223 248 79 45 chrX 68209998 68210147 -94389783 - L1M4 LINE L1 -1099 5047 4905 2213 95 0 0 chrX 68210147 68210432 -94389498 + AluSg SINE Alu 1 285 -25 2223 248 79 45 chrX 68210432 68211064 -94388866 - L1M4 LINE L1 -1241 4905 4296 2145 98 3 28 chrX 68211064 68211381 -94388549 - AluSg SINE Alu -1 309 1 2223 248 79 45 chrX 68211381 68211821 -94388109 - L1M4 LINE L1 -1850 4296 3774 2434 53 7 10 chrX 68211821 68212120 -94387810 - AluY SINE Alu -13 298 1 2223 248 79 45 chrX 68212120 68212209 -94387721 - L1M4 LINE L1 -2372 3774 3690 4130 213 52 17 chrX 68212239 68214056 -94385874 - L1MA7 LINE L1 -29 6262 4510 2556 66 0 0 chrX 68214056 68214358 -94385572 - AluSq SINE Alu -11 302 1 4130 213 52 17 chrX 68214358 68215333 -94384597 - L1MA7 LINE L1 -1781 4510 2201 2232 245 66 11 chrX 68215461 68216245 -94383685 - L1MB8 LINE L1 -37 6141 5315 1170 229 48 20 chrX 68216236 68216430 -94383500 - L1MB8 LINE L1 -1406 4740 4553 * 2198 125 0 7 chrX 68216430 68216735 -94383195 - AluSg SINE Alu -7 303 1 1170 229 48 20 chrX 68216735 68216933 -94382997 - L1MB8 LINE L1 -1593 4553 4337 2154 102 23 13 chrX 68216959 68217262 -94382668 - AluSq SINE Alu -7 306 1 1576 219 14 11 chrX 68217293 68217662 -94382268 - L1MC3 LINE L1 -1127 6658 6289 310 248 129 0 chrX 68217660 68217868 -94382062 + L1M4 LINE L1 4037 4307 -1839 * 654 254 96 26 chrX 68217868 68218211 -94381719 - L1MCc LINE L1 -4970 1453 1087 294 268 31 63 chrX 68218281 68218408 -94381522 - L1MCc LINE L1 -5474 949 827 2270 63 4 0 chrX 68218645 68218916 -94381014 + AluSp SINE Alu 5 276 -37 408 291 44 15 chrX 68219093 68219335 -94380595 - L1MCc LINE L1 -5766 656 101 2321 97 0 3 chrX 68219455 68219764 -94380166 - AluSq SINE Alu -3 310 3 2083 134 0 16 chrX 68219789 68220096 -94379834 - AluSx SINE Alu -10 302 1 1618 240 70 55 chrX 68220163 68220979 -94378951 - L1MDa LINE L1 -4246 2294 1459 2495 71 0 3 chrX 68220979 68221289 -94378641 - AluY SINE Alu -2 309 1 1618 240 70 55 chrX 68221289 68221452 -94378478 - L1MDa LINE L1 -5081 1459 1300 * 2290 212 87 22 chrX 68221447 68222442 -94377488 - L1MB8 LINE L1 0 6178 5124 2312 216 51 108 chrX 68222465 68223118 -94376812 - L1MB8 LINE L1 -1375 4771 4082 1833 132 28 21 chrX 68223118 68223406 -94376524 + AluJb SINE Alu 6 295 -17 2312 216 51 108 chrX 68223406 68223831 -94376099 - L1MB8 LINE L1 -2064 4082 3634 2275 160 23 19 chrX 68223831 68224262 -94375668 + L1PA15 LINE L1 5733 6165 0 2312 216 51 108 chrX 68224262 68224435 -94375495 - L1MB8 LINE L1 -2512 3634 3604 2098 104 0 14 chrX 68224435 68224745 -94375185 - AluSx SINE Alu 0 306 1 2312 216 51 108 chrX 68224745 68224891 -94375039 - L1MB8 LINE L1 -2542 3604 3451 1212 93 0 0 chrX 68224922 68225083 -94374847 - AluSq SINE Alu -14 299 139 2009 127 7 26 chrX 68225084 68225392 -94374538 - AluSx SINE Alu -10 302 1 581 128 0 11 chrX 68225432 68225526 -94374404 - AluSg/x SINE Alu -8 302 210 1735 135 0 8 chrX 68225526 68225771 -94374159 - AluSx SINE Alu -69 243 1 1563 262 85 7 chrX 68225846 68226602 -94373328 - L1MB8 LINE L1 -2987 3159 2345 26 74 0 0 chrX 68226656 68226710 -94373220 + AT_rich Low_complexity Low_complexity 1 54 0 2465 76 7 0 chrX 68226765 68227069 -94372861 - AluSp SINE Alu -7 306 1 26 88 0 0 chrX 68227198 68227266 -94372664 + AT_rich Low_complexity Low_complexity 1 68 0 1546 158 96 11 chrX 68227326 68227598 -94372332 + AluJb SINE Alu 1 295 -17 302 252 56 49 chrX 68227960 68228103 -94371827 - L1MDa LINE L1 -5935 595 452 635 296 31 0 chrX 68228151 68228408 -94371522 + HAL1b LINE L1 505 769 -579 198 115 58 0 chrX 68228502 68228554 -94371376 + (TA)n Simple_repeat Simple_repeat 1 55 0 47 44 0 0 chrX 68228561 68228629 -94371301 + AT_rich Low_complexity Low_complexity 1 68 0 306 246 27 0 chrX 68228676 68228786 -94371144 + HAL1b LINE L1 986 1098 -250 253 174 250 23 chrX 68228835 68228976 -94370954 - L1ME2 LINE L1 -2 6162 5975 251 244 73 0 chrX 68229070 68229152 -94370778 + HAL1b LINE L1 1221 1308 -40 1869 167 0 13 chrX 68229154 68229459 -94370471 - AluJb SINE Alu -11 301 1 23 54 0 0 chrX 68229523 68229560 -94370370 + AT_rich Low_complexity Low_complexity 1 37 0 2242 232 81 52 chrX 68230068 68230258 -94369672 + L1MDa LINE L1 2450 2633 -3907 2238 108 3 19 chrX 68230258 68230574 -94369356 + AluSq SINE Alu 1 311 -2 2242 232 81 52 chrX 68230574 68230766 -94369164 + L1MDa LINE L1 2633 2818 -3722 2193 110 3 7 chrX 68230766 68231066 -94368864 + AluSq SINE Alu 1 299 -14 2242 232 81 52 chrX 68231066 68231370 -94368560 + L1MDa LINE L1 2818 3112 -3428 2181 97 7 17 chrX 68231370 68231669 -94368261 - AluSx SINE Alu -16 296 1 2242 232 81 52 chrX 68231669 68232133 -94367797 + L1MDa LINE L1 3112 3634 -2906 2034 96 53 4 chrX 68232386 68232667 -94367263 - AluSq SINE Alu -18 295 1 4989 214 114 35 chrX 68232670 68232951 -94366979 - L1M3c LINE L1 -4612 2425 2168 1785 149 14 24 chrX 68232951 68233247 -94366683 - AluJb SINE Alu -14 298 6 4989 214 114 35 chrX 68233247 68233332 -94366598 - L1M3c LINE L1 -4869 2168 2091 2164 78 0 44 chrX 68233332 68233651 -94366279 - AluSg1 SINE Alu 0 306 1 4989 214 114 35 chrX 68233651 68235034 -94364896 - L1M3c LINE L1 -4946 2091 493 1313 236 32 17 chrX 68235043 68235514 -94364416 - L1M4 LINE L1 -4903 1639 1162 550 344 45 24 chrX 68235515 68235937 -94363993 + L1M4b LINE L1 639 1069 -5710 2517 74 0 0 chrX 68235938 68236247 -94363683 - AluSx SINE Alu -3 309 1 2000 260 30 4 chrX 68237561 68238300 -94361630 + L1M3c LINE L1 1573 2263 -4516 1813 226 50 58 chrX 68238404 68238700 -94361230 + L1M3c LINE L1 3188 3485 -3363 2181 97 7 17 chrX 68238700 68238999 -94360931 - AluSx SINE Alu -16 296 1 1813 226 50 58 chrX 68238999 68239463 -94360467 + L1M3c LINE L1 3485 3942 -2906 1560 159 57 14 chrX 68239714 68239997 -94359933 - AluSx SINE Alu -17 295 1 201 402 9 9 chrX 68240040 68240152 -94359778 - L2 LINE L2 -453 2861 2750 180 294 176 0 chrX 68240729 68240814 -94359116 + MIR SINE MIR 162 261 -1 433 331 145 47 chrX 68240883 68241522 -94358408 + L2 LINE L2 2572 3267 -5 221 283 0 0 chrX 68241568 68241621 -94358309 - MIR SINE MIR -58 150 98 290 186 0 43 chrX 68241936 68242006 -94357924 + MER20 DNA MER1_type 1 67 -152 728 126 146 0 chrX 68242010 68242161 -94357769 - L1MA4 LINE L1 -11 6289 6117 316 300 85 20 chrX 68242201 68242401 -94357529 - L1MC4 LINE L1 -241 7801 7589 * 355 192 0 0 chrX 68242398 68242471 -94357459 - L1MD1 LINE L1 -112 6130 6058 1653 90 9 0 chrX 68242680 68242892 -94357038 - AluSp SINE Alu -20 293 80 1267 287 63 13 chrX 68242894 68243989 -94355941 + L1M4b LINE L1 1129 2307 -4543 2398 81 0 3 chrX 68244184 68244479 -94355451 - AluSp SINE Alu -19 294 1 21 57 0 0 chrX 68244596 68244631 -94355299 + AT_rich Low_complexity Low_complexity 1 35 0 2384 106 3 0 chrX 68244701 68245012 -94354918 - AluSx SINE Alu 0 312 1 2963 46 5 5 chrX 68245133 68245502 -94354428 + L1PA5 LINE L1 5784 6152 -2 741 296 89 38 chrX 68245725 68246150 -94353780 + L1M3de LINE L1 573 1019 -5634 359 350 0 0 chrX 68246371 68246474 -94353456 + L1MA7 LINE L1 269 371 -6282 3475 249 76 37 chrX 68246486 68246753 -94353177 + L1MA7 LINE L1 927 1182 -5550 2282 101 10 0 chrX 68246753 68247061 -94352869 - AluSp SINE Alu -1 312 2 3475 249 76 37 chrX 68247061 68248390 -94351540 + L1MA7 LINE L1 1182 2353 -4379 2247 102 0 0 chrX 68248390 68248684 -94351246 + AluSx SINE Alu 1 294 -18 3475 249 76 37 chrX 68248684 68250073 -94349857 + L1MA7 LINE L1 2353 3687 -3045 6142 202 57 27 chrX 68250183 68250281 -94349649 + L1MA7 LINE L1 4044 4138 -2739 2903 120 70 4 chrX 68250281 68250763 -94349167 + MER75 DNA T2_type 1 514 0 6142 202 57 27 chrX 68250763 68251141 -94348789 + L1MA7 LINE L1 4138 4503 -2374 2074 125 30 0 chrX 68251141 68251436 -94348494 - AluSx SINE Alu -8 304 1 6142 202 57 27 chrX 68251436 68252602 -94347328 + L1MA7 LINE L1 4503 5633 -1244 8040 73 10 8 chrX 68252602 68253671 -94346259 - MER11C LTR ERVK 0 1071 1 6142 202 57 27 chrX 68253671 68254778 -94345152 + L1MA7 LINE L1 5633 6877 0 265 262 73 18 chrX 68254983 68255147 -94344783 + L1MD3 LINE L1 2186 2358 -3788 * 606 266 131 86 chrX 68255138 68255266 -94344664 + L1MD3 LINE L1 2740 2861 -3285 2101 108 27 3 chrX 68255266 68255562 -94344368 + AluSx SINE Alu 2 304 -8 606 266 131 86 chrX 68255562 68256539 -94343391 + L1MD3 LINE L1 2861 3792 -2354 228 35 0 0 chrX 68256539 68256568 -94343362 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 606 266 131 86 chrX 68256568 68256588 -94343342 + L1MD3 LINE L1 3792 3810 -2336 2108 140 0 0 chrX 68256588 68256895 -94343035 + AluSx SINE Alu 1 307 -5 606 266 131 86 chrX 68256895 68256978 -94342952 + L1MD3 LINE L1 3810 3888 -2258 1060 219 146 4 chrX 68256978 68257238 -94342692 + AluJo SINE Alu 3 299 -3 606 266 131 86 chrX 68257238 68257750 -94342180 + L1MD3 LINE L1 3888 4541 -1605 2249 84 7 7 chrX 68257755 68258052 -94341878 + AluSg SINE Alu 2 298 -12 1529 264 134 28 chrX 68258085 68258181 -94341749 + L1MD3 LINE L1 5129 5213 -2782 2245 115 0 10 chrX 68258181 68258486 -94341444 - AluSp SINE Alu -11 302 1 1529 264 134 28 chrX 68258486 68258682 -94341248 + L1MD3 LINE L1 5213 5387 -2608 1999 99 3 64 chrX 68258682 68258996 -94340934 - AluSx SINE Alu -17 295 1 1529 264 134 28 chrX 68258996 68259791 -94340139 + L1MD3 LINE L1 5387 7979 -16 362 247 53 7 chrX 68260075 68260225 -94339705 + L1M1 LINE L1 2979 3135 -4430 518 214 9 18 chrX 68260250 68260362 -94339568 - FLAM_A SINE Alu -20 122 12 2906 284 78 15 chrX 68260461 68261805 -94338125 + L1 LINE L1 1251 2749 -4597 252 0 0 0 chrX 68261805 68261833 -94338097 + (TA)n Simple_repeat Simple_repeat 1 28 0 2906 284 78 15 chrX 68261833 68262320 -94337610 + L1 LINE L1 2749 3204 -4142 803 210 62 89 chrX 68262442 68262630 -94337300 + L1 LINE L1 3433 3625 -3940 2057 92 28 18 chrX 68262630 68262914 -94337016 + AluSq SINE Alu 1 287 -26 803 210 62 89 chrX 68262914 68263268 -94336662 + L1 LINE L1 3625 3970 -3595 3223 239 88 66 chrX 68263269 68264174 -94335756 + L1MA5 LINE L1 1727 2610 -4955 1770 82 0 4 chrX 68264174 68264405 -94335525 + AluSx SINE Alu 1 230 -82 3223 239 88 66 chrX 68264405 68265235 -94334695 + L1MA5 LINE L1 2610 3501 -4064 1030 258 80 36 chrX 68265245 68265830 -94334100 + L1MA5 LINE L1 5013 5623 -1942 1138 194 149 3 chrX 68265839 68266195 -94333735 + L1MA5 LINE L1 5822 6229 -1336 6788 248 159 6 chrX 68266566 68271088 -94328842 + L1PA15 LINE L1 1264 6506 -310 2285 250 109 5 chrX 68271152 68271340 -94328590 + L1MA5 LINE L1 6739 6906 -813 2100 126 0 0 chrX 68271340 68271617 -94328313 - AluSx SINE Alu -35 277 1 2285 250 109 5 chrX 68271617 68272292 -94327638 + L1MA5 LINE L1 6906 7692 -27 739 169 134 0 chrX 68272396 68272568 -94327362 + L1 LINE L1 5423 5617 -1948 648 222 144 16 chrX 68272574 68272730 -94327200 + L1 LINE L1 5710 5845 -1720 5498 145 29 45 chrX 68272730 68273819 -94326111 - MER11C LTR ERVK 0 1071 1 648 222 144 16 chrX 68273819 68273968 -94325962 + L1 LINE L1 5845 6054 -1511 839 211 74 39 chrX 68274074 68274411 -94325519 + L1MB8 LINE L1 4423 4771 -1375 2290 212 87 22 chrX 68274434 68275429 -94324501 + L1MB8 LINE L1 5124 6178 0 1624 240 70 54 chrX 68275424 68275587 -94324343 + L1MDa LINE L1 1300 1459 -5081 * 2495 71 0 3 chrX 68275587 68275897 -94324033 + AluY SINE Alu 1 309 -2 1624 240 70 54 chrX 68275897 68276712 -94323218 + L1MDa LINE L1 1459 2294 -4246 2083 134 0 16 chrX 68276779 68277086 -94322844 + AluSx SINE Alu 1 302 -10 2321 97 0 3 chrX 68277111 68277420 -94322510 + AluSq SINE Alu 3 310 -3 408 291 44 15 chrX 68277540 68277782 -94322148 + L1MCb LINE L1 101 656 -5766 2280 69 4 0 chrX 68277959 68278234 -94321696 - AluSp SINE Alu -37 276 1 21 57 0 0 chrX 68278351 68278386 -94321544 + AT_rich Low_complexity Low_complexity 1 35 0 2384 106 3 0 chrX 68278455 68278766 -94321164 - AluSx SINE Alu 0 312 1 2963 46 5 5 chrX 68278887 68279256 -94320674 + L1PA5 LINE L1 5784 6152 -2 741 296 89 38 chrX 68279479 68279904 -94320026 + L1M3de LINE L1 573 1019 -5634 359 350 0 0 chrX 68280125 68280228 -94319702 + L1M3de LINE L1 269 371 -6282 752 285 27 5 chrX 68280240 68280461 -94319469 + L1M3de LINE L1 927 1152 -5501 1222 172 45 30 chrX 68280609 68280941 -94318989 + L1PA15 LINE L1 5829 6165 0 530 236 7 84 chrX 68280952 68281114 -94318816 - L1M4 LINE L1 -2410 3736 3607 2098 104 0 14 chrX 68281114 68281424 -94318506 - AluSx SINE Alu 0 306 1 530 236 7 84 chrX 68281424 68281570 -94318360 - L1M4 LINE L1 -2539 3607 3451 1212 93 0 0 chrX 68281601 68281762 -94318168 - AluSq SINE Alu -14 299 139 2009 127 7 26 chrX 68281763 68282071 -94317859 - AluSx SINE Alu -10 302 1 581 128 0 11 chrX 68282111 68282205 -94317725 - AluSg/x SINE Alu -8 301 209 1735 135 0 8 chrX 68282205 68282450 -94317480 - AluSx SINE Alu -69 243 1 1563 262 85 7 chrX 68282525 68283281 -94316649 - L1M4 LINE L1 -2987 3159 2345 26 74 0 0 chrX 68283335 68283389 -94316541 + AT_rich Low_complexity Low_complexity 1 54 0 801 60 10 0 chrX 68283444 68283544 -94316386 - AluSp/q SINE Alu -8 305 205 1546 158 96 11 chrX 68284029 68284301 -94315629 - AluJb SINE Alu -17 295 1 26 88 0 0 chrX 68284361 68284429 -94315501 + AT_rich Low_complexity Low_complexity 1 68 0 512 245 36 46 chrX 68334541 68334647 -94265283 - L1M4 LINE L1 -2263 3883 3778 2403 54 7 10 chrX 68334647 68334943 -94264987 - AluY SINE Alu -16 295 1 512 245 36 46 chrX 68334943 68335032 -94264898 - L1M4 LINE L1 -2368 3778 3690 4368 217 52 17 chrX 68335062 68336879 -94263051 - L1MA7 LINE L1 -29 6262 4510 2543 66 0 0 chrX 68336879 68337181 -94262749 - AluSq SINE Alu -11 302 1 4368 217 52 17 chrX 68337181 68338155 -94261775 - L1MA7 LINE L1 -1781 4510 2201 2455 245 66 11 chrX 68338283 68339067 -94260863 - L1MB8 LINE L1 -37 6141 5315 1276 233 46 22 chrX 68339058 68339252 -94260678 - L1MB8 LINE L1 -1406 4740 4552 * 2184 121 0 7 chrX 68339252 68339557 -94260373 - AluSg SINE Alu -7 303 1 1276 233 46 22 chrX 68339557 68339774 -94260156 - L1MB8 LINE L1 -1594 4552 4319 2119 102 23 13 chrX 68339781 68340084 -94259846 - AluSq SINE Alu -7 306 1 1687 219 14 11 chrX 68340115 68340484 -94259446 - L1MC3 LINE L1 -1127 6658 6289 344 243 129 0 chrX 68340482 68340690 -94259240 + L1M4 LINE L1 4037 4307 -1839 * 749 255 85 63 chrX 68340690 68341231 -94258699 - L1MCc LINE L1 -4968 1454 946 2279 63 4 0 chrX 68341467 68341738 -94258192 + AluSp SINE Alu 5 276 -37 471 305 49 21 chrX 68341855 68342140 -94257790 - L1MCc LINE L1 -6030 393 101 2312 97 0 3 chrX 68342275 68342584 -94257346 - AluSq SINE Alu -3 310 3 2065 131 0 16 chrX 68342609 68342914 -94257016 - AluSx SINE Alu -10 302 3 1685 244 71 58 chrX 68342947 68343800 -94256130 - L1MDa LINE L1 -4208 2332 1465 2492 71 0 3 chrX 68343800 68344110 -94255820 - AluY SINE Alu -2 309 1 1685 244 71 58 chrX 68344110 68344172 -94255758 - L1MDa LINE L1 -5075 1465 1405 2360 200 89 23 chrX 68344348 68345245 -94254685 - L1MB8 LINE L1 -104 6074 5124 2263 226 53 95 chrX 68345268 68345921 -94254009 - L1MB8 LINE L1 -1375 4771 4093 1831 132 28 21 chrX 68345921 68346209 -94253721 + AluJb SINE Alu 6 295 -17 2263 226 53 95 chrX 68346209 68346634 -94253296 - L1MB8 LINE L1 -2053 4093 3652 2275 160 23 19 chrX 68346634 68347065 -94252865 + L1PA15 LINE L1 5733 6165 0 2263 226 53 95 chrX 68347065 68347238 -94252692 - L1MB8 LINE L1 -2494 3652 3601 2098 104 0 14 chrX 68347238 68347548 -94252382 - AluSx SINE Alu 0 306 1 2263 226 53 95 chrX 68347548 68347694 -94252236 - L1MB8 LINE L1 -2545 3601 3451 1212 93 0 0 chrX 68347725 68347886 -94252044 - AluSq SINE Alu -14 299 139 2009 127 7 26 chrX 68347887 68348195 -94251735 - AluSx SINE Alu -10 302 1 581 128 0 11 chrX 68348235 68348329 -94251601 - AluSg/x SINE Alu -8 301 209 1735 135 0 8 chrX 68348329 68348574 -94251356 - AluSx SINE Alu -69 243 1 1563 262 85 7 chrX 68348649 68349405 -94250525 - L1MB8 LINE L1 -2987 3159 2345 26 74 0 0 chrX 68349459 68349513 -94250417 + AT_rich Low_complexity Low_complexity 1 54 0 2455 76 7 0 chrX 68349568 68349871 -94250059 - AluSp SINE Alu -8 305 1 26 88 0 0 chrX 68350000 68350068 -94249862 + AT_rich Low_complexity Low_complexity 1 68 0 1546 158 96 11 chrX 68350128 68350400 -94249530 + AluJb SINE Alu 1 295 -17 302 252 56 49 chrX 68350762 68350905 -94249025 - L1MEd LINE L1 -5935 184 41 635 296 31 0 chrX 68350953 68351210 -94248720 + HAL1b LINE L1 505 769 -579 198 115 58 0 chrX 68351304 68351356 -94248574 + (TA)n Simple_repeat Simple_repeat 2 56 0 47 44 0 0 chrX 68351363 68351431 -94248499 + AT_rich Low_complexity Low_complexity 1 68 0 306 246 27 0 chrX 68351478 68351588 -94248342 + HAL1b LINE L1 986 1098 -250 253 174 250 23 chrX 68351637 68351778 -94248152 - L1ME2 LINE L1 -2 6162 5975 251 244 73 0 chrX 68351872 68351954 -94247976 + HAL1b LINE L1 1221 1308 -40 1884 164 0 13 chrX 68351956 68352261 -94247669 - AluJb SINE Alu -11 301 1 23 54 0 0 chrX 68352325 68352362 -94247568 + AT_rich Low_complexity Low_complexity 1 37 0 2242 232 81 52 chrX 68352870 68353060 -94246870 + L1MDa LINE L1 2450 2633 -3907 2265 104 3 19 chrX 68353060 68353376 -94246554 + AluSq SINE Alu 1 311 -2 2242 232 81 52 chrX 68353376 68353568 -94246362 + L1MDa LINE L1 2633 2818 -3722 2193 110 3 7 chrX 68353568 68353868 -94246062 + AluSq SINE Alu 1 299 -14 2242 232 81 52 chrX 68353868 68354172 -94245758 + L1MDa LINE L1 2818 3112 -3428 2181 97 7 17 chrX 68354172 68354471 -94245459 - AluSx SINE Alu -16 296 1 2242 232 81 52 chrX 68354471 68354935 -94244995 + L1MDa LINE L1 3112 3634 -2906 1560 159 57 14 chrX 68355186 68355469 -94244461 - AluSx SINE Alu -17 295 1 201 402 9 9 chrX 68355512 68355624 -94244306 - L2 LINE L2 -453 2861 2750 180 294 176 0 chrX 68356201 68356286 -94243644 + MIR SINE MIR 162 261 -1 433 331 145 47 chrX 68356355 68356994 -94242936 + L2 LINE L2 2572 3267 -5 221 283 0 0 chrX 68357040 68357093 -94242837 - MIR SINE MIR -58 150 98 290 186 0 43 chrX 68357408 68357478 -94242452 + MER20 DNA MER1_type 1 67 -152 728 126 146 0 chrX 68357482 68357633 -94242297 - L1MA4 LINE L1 -11 6289 6117 316 300 85 20 chrX 68357673 68357873 -94242057 - L1MC4 LINE L1 -241 7801 7589 * 355 192 0 0 chrX 68357870 68357943 -94241987 - L1MD1 LINE L1 -112 6130 6058 1653 90 9 0 chrX 68358152 68358364 -94241566 - AluSp SINE Alu -20 293 80 1236 289 63 13 chrX 68358366 68359461 -94240469 + L1M4 LINE L1 1238 2416 -4543 2398 81 0 3 chrX 68359656 68359951 -94239979 - AluSp SINE Alu -19 294 1 21 57 0 0 chrX 68360068 68360103 -94239827 + AT_rich Low_complexity Low_complexity 1 35 0 2384 106 3 0 chrX 68360172 68360483 -94239447 - AluSx SINE Alu 0 312 1 2963 46 5 5 chrX 68360604 68360973 -94238957 + L1PA5 LINE L1 5784 6152 -2 741 296 89 38 chrX 68361196 68361621 -94238309 + L1MA7 LINE L1 573 1019 -5634 359 350 0 0 chrX 68361842 68361945 -94237985 + L1PBb LINE L1 269 371 -6282 3475 250 75 37 chrX 68361957 68362224 -94237706 + L1MA7 LINE L1 927 1182 -5550 2282 101 10 0 chrX 68362224 68362532 -94237398 - AluSp SINE Alu -1 312 2 3475 250 75 37 chrX 68362532 68363861 -94236069 + L1MA7 LINE L1 1182 2348 -4384 2247 102 0 0 chrX 68363861 68364155 -94235775 + AluSx SINE Alu 1 294 -18 3475 250 75 37 chrX 68364155 68365548 -94234382 + L1MA7 LINE L1 2348 3687 -3045 6163 202 57 27 chrX 68365658 68365756 -94234174 + L1MA7 LINE L1 4044 4138 -2739 2903 120 70 4 chrX 68365756 68366238 -94233692 + MER75 DNA T2_type 1 514 0 6163 202 57 27 chrX 68366238 68366616 -94233314 + L1MA7 LINE L1 4138 4503 -2374 2074 125 30 0 chrX 68366616 68366911 -94233019 - AluSx SINE Alu -8 304 1 6163 202 57 27 chrX 68366911 68368076 -94231854 + L1MA7 LINE L1 4503 5631 -1246 8054 72 10 8 chrX 68368076 68369145 -94230785 - MER11C LTR ERVK 0 1071 1 6163 202 57 27 chrX 68369145 68370252 -94229678 + L1MA7 LINE L1 5631 6877 0 265 262 73 18 chrX 68370457 68370621 -94229309 + L1M4 LINE L1 2997 3169 -3788 * 683 249 64 16 chrX 68370612 68370740 -94229190 + L1M4 LINE L1 3551 3671 -3286 2110 108 27 3 chrX 68370740 68371037 -94228893 + AluSx SINE Alu 2 305 -7 683 249 64 16 chrX 68371037 68371281 -94228649 + L1M4 LINE L1 3671 3941 -3016 407 327 101 25 chrX 68371423 68371741 -94228189 + L1M4 LINE L1 4187 4528 -2429 1734 116 34 0 chrX 68371896 68372163 -94227767 - AluSx SINE Alu -36 276 1 359 262 23 144 chrX 68373921 68374364 -94225566 + L1PBb LINE L1 564 952 -5781 426 321 18 12 chrX 68374577 68374742 -94225188 + L1PBb LINE L1 927 1092 -5641 570 228 90 6 chrX 68374799 68374966 -94224964 + L1PBb LINE L1 1323 1503 -5229 308 305 0 21 chrX 68374966 68375061 -94224869 - L1MC4 LINE L1 -1336 6706 6614 246 287 0 0 chrX 68375073 68375160 -94224770 + L1MC4 LINE L1 6614 6700 -1342 333 256 0 22 chrX 68375165 68375255 -94224675 + L1MC4 LINE L1 6614 6701 -1341 4209 166 80 104 chrX 68375377 68375844 -94224086 + L1PBb LINE L1 1570 2047 -4685 760 179 0 15 chrX 68375844 68375978 -94223952 - FLAM_C SINE Alu 0 133 2 4209 166 80 104 chrX 68375978 68376226 -94223704 + L1PBb LINE L1 2047 2299 -4433 2275 121 0 0 chrX 68376226 68376532 -94223398 - AluSg SINE Alu -4 306 1 4209 166 80 104 chrX 68376532 68377157 -94222773 + L1PBb LINE L1 2299 2878 -3854 3076 60 7 0 chrX 68377155 68377645 -94222285 - L1PA7 LINE L1 -480 5674 5182 * 3884 43 2 0 chrX 68377645 68378112 -94221818 + L1PA7 LINE L1 5685 6152 -2 2114 101 0 63 chrX 68378116 68378253 -94221677 + AluSx SINE Alu 1 145 -192 5555 87 32 19 chrX 68378253 68379434 -94220496 + SVA Other Other 16 1047 -339 2114 101 0 63 chrX 68379434 68379649 -94220281 + AluSx SINE Alu 145 337 0 996 248 6 12 chrX 68379651 68379973 -94219957 + L1 LINE L1 2282 2601 -3545 2316 105 0 0 chrX 68379973 68380277 -94219653 + AluSx SINE Alu 1 304 -8 2178 96 0 4 chrX 68380281 68380582 -94219348 + AluSg SINE Alu 3 302 0 315 260 52 0 chrX 68380582 68380678 -94219252 - L1MC4a LINE L1 -1297 6511 6411 2108 140 0 0 chrX 68380819 68381126 -94218804 + AluSx SINE Alu 1 307 -5 1060 219 146 4 chrX 68381209 68381469 -94218461 + AluJo SINE Alu 3 299 -3 613 289 86 29 chrX 68381490 68381981 -94217949 + L1MD3 LINE L1 4023 4541 -1605 2238 88 7 7 chrX 68381986 68382283 -94217647 + AluSg SINE Alu 2 298 -12 1529 262 137 29 chrX 68382336 68382414 -94217516 + L1MD3 LINE L1 5148 5216 -2779 2245 115 0 10 chrX 68382414 68382719 -94217211 - AluSp SINE Alu -11 302 1 1529 262 137 29 chrX 68382719 68382915 -94217015 + L1MD3 LINE L1 5216 5389 -2606 2095 92 0 60 chrX 68382915 68383229 -94216701 - AluSx SINE Alu -17 295 1 1529 262 137 29 chrX 68383229 68384024 -94215906 + L1MD3 LINE L1 5389 7979 -16 362 247 53 7 chrX 68384308 68384458 -94215472 + L1M1 LINE L1 2979 3135 -4430 518 214 9 18 chrX 68384483 68384595 -94215335 - FLAM_A SINE Alu -20 122 12 2906 284 78 15 chrX 68384694 68386038 -94213892 + L1MA4 LINE L1 1251 2749 -4597 252 0 0 0 chrX 68386038 68386066 -94213864 + (TA)n Simple_repeat Simple_repeat 1 28 0 2906 284 78 15 chrX 68386066 68386553 -94213377 + L1MA4 LINE L1 2749 3204 -4142 803 210 62 89 chrX 68386675 68386863 -94213067 + L1MA4 LINE L1 3433 3625 -3940 2057 92 28 18 chrX 68386863 68387147 -94212783 + AluSq SINE Alu 1 287 -26 803 210 62 89 chrX 68387147 68387501 -94212429 + L1MA4 LINE L1 3625 3970 -3595 3223 239 88 66 chrX 68387502 68388407 -94211523 + L1MA5 LINE L1 1727 2610 -4955 1770 82 0 4 chrX 68388407 68388638 -94211292 + AluSx SINE Alu 1 230 -82 3223 239 88 66 chrX 68388638 68389468 -94210462 + L1MA5 LINE L1 2610 3501 -4064 1030 258 80 36 chrX 68389478 68390063 -94209867 + L1MA5 LINE L1 5013 5623 -1942 1138 194 149 3 chrX 68390072 68390428 -94209502 + L1MA5 LINE L1 5822 6229 -1336 6788 248 159 6 chrX 68390799 68395321 -94204609 + L1PA15 LINE L1 1264 6506 -310 2285 250 109 5 chrX 68395385 68395573 -94204357 + L1MA5 LINE L1 6739 6906 -813 2100 126 0 0 chrX 68395573 68395850 -94204080 - AluSx SINE Alu -35 277 1 2285 250 109 5 chrX 68395850 68396525 -94203405 + L1MA5 LINE L1 6906 7692 -27 739 169 134 0 chrX 68396629 68396801 -94203129 + L1MA4 LINE L1 5423 5617 -1948 348 223 25 16 chrX 68396807 68396928 -94203002 + L1MA4 LINE L1 5710 5831 -1734 2959 248 108 9 chrX 68396945 68396963 -94202967 + L1MA4 LINE L1 5858 5873 -1846 6033 146 29 45 chrX 68396963 68398052 -94201878 - MER11C LTR ERVK 0 1071 1 2959 248 108 9 chrX 68398052 68399729 -94200201 + L1MA4 LINE L1 5873 7705 -14 1970 250 138 21 chrX 68399789 68400919 -94199011 + L1MA6 LINE L1 3316 4576 -2989 * 3998 244 55 53 chrX 68400905 68401519 -94198411 + L1MA6 LINE L1 4805 5416 -2149 2480 66 0 25 chrX 68401519 68401837 -94198093 + AluY SINE Alu 1 310 -1 3998 244 55 53 chrX 68401837 68402812 -94197118 + L1MA6 LINE L1 5416 6615 -950 5144 45 0 8 chrX 68402812 68403413 -94196517 + L1PA3 LINE L1 5559 6154 -1 3998 244 55 53 chrX 68403413 68403549 -94196381 + L1MA6 LINE L1 6615 6749 -816 1157 243 106 31 chrX 68403923 68404367 -94195563 + L1MA6 LINE L1 7243 7719 0 958 261 23 13 chrX 68404356 68404662 -94195268 + L1 LINE L1 3670 3978 -2168 * 422 194 396 0 chrX 68404662 68404801 -94195129 + Tigger1 DNA MER2_type 363 556 -1862 1220 229 78 5 chrX 68404801 68404989 -94194941 + L1 LINE L1 3996 4169 -1977 198 0 0 0 chrX 68404989 68405011 -94194919 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1220 229 78 5 chrX 68405011 68405233 -94194697 + L1 LINE L1 4169 4436 -1710 2793 234 45 19 chrX 68405271 68406019 -94193911 + Tigger1 DNA MER2_type 14 781 -1637 43015 54 4 1 chrX 68406031 68412162 -94187768 - L1PA5 LINE L1 0 6154 13 219 103 0 0 chrX 68412163 68412202 -94187728 + (T)n Simple_repeat Simple_repeat 1 39 0 1524 167 184 7 chrX 68412205 68412510 -94187420 - MSTA LTR MaLR -68 360 2 772 217 33 5 chrX 68412511 68412695 -94187235 - L1M4 LINE L1 -1148 4998 4810 31424 117 15 48 chrX 68412695 68419069 -94180861 - L1PA7 LINE L1 0 6154 1 2106 101 0 0 chrX 68419349 68419627 -94180303 + AluSc SINE Alu 1 278 -31 2348 92 0 0 chrX 68419629 68419932 -94179998 + AluSg SINE Alu 1 303 -7 966 201 6 0 chrX 68419933 68420102 -94179828 + AluJb SINE Alu 134 303 -9 215 286 27 9 chrX 68420219 68420331 -94179599 + (CATATA)n Simple_repeat Simple_repeat 1 114 0 896 89 0 0 chrX 68420526 68420662 -94179268 + AluY SINE Alu 170 305 0 207 0 0 0 chrX 68420675 68420698 -94179232 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 686 207 24 12 chrX 68420718 68420882 -94179048 + L1M4 LINE L1 4164 4329 -1817 13092 255 28 25 chrX 68420968 68423486 -94176444 + L1PA12 LINE L1 839 3348 -4236 2481 67 0 10 chrX 68423486 68423800 -94176130 + AluY SINE Alu 1 311 0 13092 255 28 25 chrX 68423800 68426608 -94173322 + L1PA12 LINE L1 3348 6130 -1454 1091 255 24 9 chrX 68426600 68426929 -94173001 - L1M4 LINE L1 -4839 1703 1370 * 2947 159 4 31 chrX 68426934 68427418 -94172512 - MER54A LTR ERVL -414 487 17 330 26 0 0 chrX 68427419 68427429 -94172501 + (TG)n Simple_repeat Simple_repeat 1 49 0 330 26 0 0 chrX 68427429 68427468 -94172462 + (TG)n Simple_repeat Simple_repeat 2 40 0 451 212 0 9 chrX 68428604 68428717 -94171213 + MER107 DNA MER1_type 66 177 -20 206 192 39 26 chrX 68428867 68428945 -94170985 + (TA)n Simple_repeat Simple_repeat 1 79 0 4796 190 26 37 chrX 68428986 68429011 -94170919 + HERVL74 LTR ERVL 1133 1157 -4528 1766 146 65 4 chrX 68429011 68429286 -94170644 + AluJo SINE Alu 1 292 -20 4796 190 26 37 chrX 68429286 68430090 -94169840 + HERVL74 LTR ERVL 1157 1952 -3733 2337 100 3 0 chrX 68430090 68430390 -94169540 - AluSx SINE Alu -11 301 1 4796 190 26 37 chrX 68430390 68430548 -94169382 + HERVL74 LTR ERVL 1952 2110 -3575 1822 190 40 20 chrX 68430556 68430903 -94169027 + HERVL74 LTR ERVL 2239 2592 -3093 549 158 0 0 chrX 68430916 68430998 -94168932 + HERVL74 LTR ERVL 2843 2924 -2761 1732 154 7 37 chrX 68431009 68431307 -94168623 + AluJo SINE Alu 13 301 -11 3033 151 68 4 chrX 68431308 68431839 -94168091 + L1MB2 LINE L1 5607 6171 0 2784 145 44 78 chrX 68431839 68432390 -94167540 + HERVL74 LTR ERVL 1624 2155 -3530 364 238 38 8 chrX 68432466 68432596 -94167334 - LTR43 LTR ERV1 -207 472 187 496 168 40 2 chrX 68432805 68432978 -94166952 - MSTB1 LTR MaLR -220 212 1 1933 247 56 61 chrX 68433025 68433745 -94166185 + HERVL74 LTR ERVL 4926 5641 -44 3238 191 16 2 chrX 68433771 68434321 -94165609 + MER74A LTR ERVL 1 558 0 229 298 92 76 chrX 68434350 68434588 -94165342 - LTR16C LTR ERVL -55 436 195 685 194 20 60 chrX 68434846 68435047 -94164883 - L1MC5 LINE L1 -420 7541 7349 806 259 6 0 chrX 68435053 68435219 -94164711 + FAM SINE Alu 1 167 -8 382 182 82 36 chrX 68435236 68435346 -94164584 - L1MC5 LINE L1 -868 7093 6979 1135 139 5 62 chrX 68435351 68435559 -94164371 - MLT1B LTR MaLR -2 388 193 410 176 121 0 chrX 68435560 68435651 -94164279 - MLT1-int LTR MaLR -1269 102 1 * 1537 236 26 1 chrX 68435651 68435983 -94163947 - MLT1-int LTR MaLR -119 1252 959 293 245 71 10 chrX 68436068 68436166 -94163764 - MLT1-int LTR MaLR -956 779 676 4349 174 14 8 chrX 68436221 68436999 -94162931 - MLT1-int LTR MaLR -484 887 105 450 142 15 172 chrX 68437002 68437093 -94162837 - MLT1B LTR MaLR -270 120 55 934 211 26 0 chrX 68437093 68437249 -94162681 - FAM SINE Alu -11 164 5 450 142 15 172 chrX 68437249 68437291 -94162639 - MLT1B LTR MaLR -335 55 8 485 239 45 26 chrX 68437316 68437471 -94162459 - L1MC4 LINE L1 -973 7069 6912 2263 92 3 3 chrX 68437487 68437779 -94162151 - AluSx SINE Alu -20 292 1 7277 153 116 4 chrX 68439545 68441287 -94158643 - L1MA1 LINE L1 -9 6293 4320 2362 65 3 10 chrX 68442143 68442423 -94157507 + AluY SINE Alu 1 278 -33 396 0 0 0 chrX 68442423 68442467 -94157463 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2362 65 3 10 chrX 68442467 68442501 -94157429 + AluY SINE Alu 278 311 0 3848 154 12 2 chrX 68442983 68443626 -94156304 - L1MA1 LINE L1 -1812 4334 3685 2276 76 14 0 chrX 68493836 68494127 -94105803 - AluSx SINE Alu -14 298 4 662 324 13 9 chrX 68494641 68494866 -94105064 - MIR SINE MIR -15 247 22 393 289 48 0 chrX 68494970 68495074 -94104856 + MIR SINE MIR 32 140 -68 2363 117 3 9 chrX 68495215 68495556 -94104374 + MER1B DNA MER1_type 1 339 0 1889 108 104 0 chrX 68495638 68495907 -94104023 + AluSx SINE Alu 4 300 -12 203 321 143 42 chrX 68496113 68496281 -94103649 + L2 LINE L2 2633 2817 -497 210 71 0 0 chrX 68496289 68496317 -94103613 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 267 290 108 11 chrX 68496317 68496410 -94103520 - L2 LINE L2 -18 3254 3153 434 224 159 0 chrX 68496673 68496780 -94103150 - L2 LINE L2 -3 3310 3187 443 313 11 17 chrX 68497244 68497420 -94102510 + MER5B DNA MER1_type 1 175 -3 233 192 19 19 chrX 68497735 68497787 -94102143 + L3 LINE CR1 1524 1575 -2 250 273 0 0 chrX 68498584 68498639 -94101291 - L2 LINE L2 -4 3309 3255 263 364 119 0 chrX 68498748 68498866 -94101064 + L2 LINE L2 3141 3272 0 401 258 129 16 chrX 68498887 68499011 -94100919 + MIR SINE MIR 117 254 -8 504 246 41 33 chrX 68499084 68499206 -94100724 - MIR3 SINE MIR -1 207 85 398 279 235 0 chrX 68499271 68499407 -94100523 - MIR SINE MIR -86 176 9 260 133 22 0 chrX 68499456 68499501 -94100429 + L2 LINE L2 3180 3225 -88 263 214 36 0 chrX 68499521 68499577 -94100353 - L2 LINE L2 0 3313 3256 6562 61 11 76 chrX 68499973 68501961 -94097969 + SVA Other Other 21 1439 0 544 174 43 22 chrX 68501965 68502103 -94097827 - L1M4 LINE L1 -969 5177 5037 1739 246 47 3 chrX 68502205 68502923 -94097007 - L1M4 LINE L1 -2988 3158 2368 263 260 90 30 chrX 68503073 68503173 -94096757 - MIR SINE MIR -87 121 16 1891 156 0 13 chrX 68504132 68504309 -94095621 - AluJb SINE Alu -2 310 137 2198 103 0 3 chrX 68504309 68504611 -94095319 - AluSx SINE Alu -11 301 1 1891 156 0 13 chrX 68504611 68504747 -94095183 - AluJb SINE Alu -175 137 1 4998 92 10 9 chrX 68504748 68505447 -94094483 + L1PA13 LINE L1 5464 6163 0 557 215 54 13 chrX 68505550 68505726 -94094204 + L1M4 LINE L1 3325 3513 -2633 2153 68 0 4 chrX 68507867 68508320 -94091610 + AluY SINE Alu 2 453 0 2000 183 19 29 chrX 68509456 68509634 -94090296 + L1M4 LINE L1 3527 3705 -2441 1920 100 4 4 chrX 68509634 68509940 -94089990 + AluSg SINE Alu 1 306 0 2000 183 19 29 chrX 68509940 68510176 -94089754 + L1M4 LINE L1 3705 3938 -2208 1404 159 63 7 chrX 68510179 68510449 -94089481 + L1MC1 LINE L1 6044 6328 -5 183 356 11 23 chrX 68510475 68510562 -94089368 - MIR SINE MIR -172 90 5 1782 204 46 85 chrX 68510690 68511498 -94088432 + L1MA9 LINE L1 1888 6676 -30 286 198 40 50 chrX 68511504 68511605 -94088325 + L1MDa LINE L1 1877 1976 -4566 2149 172 48 0 chrX 68511609 68511981 -94087949 + MLT1B LTR MaLR 1 390 0 1171 223 50 16 chrX 68511990 68512372 -94087558 + L1MDa LINE L1 2082 2476 -4066 206 77 26 26 chrX 68512392 68512431 -94087499 + (TA)n Simple_repeat Simple_repeat 2 40 0 1873 190 10 25 chrX 68512440 68512834 -94087096 - MLT1B LTR MaLR -2 388 1 872 175 0 51 chrX 68512854 68513031 -94086899 + AluJo SINE Alu 3 170 -142 3379 248 38 67 chrX 68513062 68514548 -94085382 + L1ME2 LINE L1 2041 3457 -2925 841 138 0 36 chrX 68514548 68514686 -94085244 + FLAM_C SINE Alu 1 133 0 3379 248 38 67 chrX 68514686 68514981 -94084949 + L1ME2 LINE L1 3457 3759 -2623 3413 135 7 4 chrX 68514983 68514998 -94084932 + L1M1 LINE L1 12 25 -7540 2074 112 3 0 chrX 68514998 68515285 -94084645 + AluSq SINE Alu 1 288 -25 186 43 0 0 chrX 68515285 68515308 -94084622 + (GGA)n Simple_repeat Simple_repeat 3 25 0 3413 135 7 4 chrX 68515308 68516195 -94083735 + L1M1 LINE L1 24 1044 -6521 2733 96 43 19 chrX 68516195 68516613 -94083317 - MSTA LTR MaLR 0 428 1 257 128 0 21 chrX 68516613 68516660 -94083270 - MSTA-int LTR MaLR 0 1651 1606 * 1387 199 114 52 chrX 68516655 68517093 -94082837 + L1ME3A LINE L1 5672 6136 -34 724 209 39 61 chrX 68517120 68517350 -94082580 + L1ME2 LINE L1 5101 5325 -1057 461 32 16 0 chrX 68517352 68517415 -94082515 + (TTTTA)n Simple_repeat Simple_repeat 5 68 0 813 142 17 0 chrX 68517416 68517536 -94082394 - FLAM_C SINE Alu -20 123 2 350 204 65 9 chrX 68517536 68517644 -94082286 + L1ME2 LINE L1 5318 5431 -951 2058 101 3 7 chrX 68517777 68518074 -94081856 - AluSp SINE Alu -17 296 1 22 0 0 0 chrX 68518078 68518100 -94081830 + AT_rich Low_complexity Low_complexity 1 22 0 3179 163 147 28 chrX 68518104 68518942 -94080988 + L1ME2 LINE L1 5431 6368 -32 883 108 0 0 chrX 68518942 68519062 -94080868 + AluSq/x SINE Alu 1 120 -193 343 313 67 20 chrX 68519208 68519358 -94080572 + L3 LINE CR1 1332 1488 -89 494 261 24 20 chrX 68521204 68521448 -94078482 - L1MC5 LINE L1 -48 7913 7606 218 262 99 57 chrX 68521646 68521787 -94078143 - MIR SINE MIR -102 160 14 468 262 51 47 chrX 68522444 68522613 -94077317 + MIR3 SINE MIR 32 206 -2 228 309 37 25 chrX 68522612 68522693 -94077237 - L3b LINE CR1 -131 1452 1371 * 375 23 0 0 chrX 68523175 68523219 -94076711 + (CA)n Simple_repeat Simple_repeat 2 45 0 1624 186 60 12 chrX 68523560 68523894 -94076036 - LTR1 LTR ERV1 -233 552 203 1359 159 12 28 chrX 68523864 68524138 -94075792 - LTR1 LTR ERV1 -527 258 46 * 3171 156 43 84 chrX 68524890 68525614 -94074316 + LTR8A LTR ERV1 34 727 0 816 215 188 55 chrX 68525973 68526266 -94073664 + MER31B LTR ERV1 1 332 -134 1910 160 0 0 chrX 68526367 68526673 -94073257 - AluSx SINE Alu -2 310 5 2172 139 56 19 chrX 68526742 68527116 -94072814 - LTR51 LTR ERV1 0 671 284 194 200 0 0 chrX 68527276 68527311 -94072619 - MIR3 SINE MIR -49 159 125 243 289 171 0 chrX 68527552 68527628 -94072302 - MIR SINE MIR -85 123 35 2054 98 0 3 chrX 68527971 68528256 -94071674 + AluSx SINE Alu 1 284 -28 186 71 0 0 chrX 68528260 68528288 -94071642 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2212 100 0 6 chrX 68529164 68529475 -94070455 - AluSg SINE Alu -1 309 1 3002 169 61 81 chrX 68529620 68530362 -94069568 - LTR8A LTR ERV1 0 727 1 1703 167 69 38 chrX 68531091 68531695 -94068235 + LTR1 LTR ERV1 31 552 -233 219 272 49 37 chrX 68532557 68532638 -94067292 + L3b LINE CR1 1371 1452 -131 * 468 257 51 47 chrX 68532637 68532806 -94067124 - MIR3 SINE MIR -2 206 32 531 215 12 110 chrX 68533740 68533986 -94065944 + L1MC5 LINE L1 7540 7761 -200 270 253 51 25 chrX 68533994 68534073 -94065857 + L1MC5 LINE L1 7833 7913 -48 598 299 108 31 chrX 68535016 68535667 -94064263 + L1M4 LINE L1 3586 4286 -1860 569 128 0 0 chrX 68535717 68535819 -94064111 + L1MB2 LINE L1 6069 6170 -1 1437 296 32 50 chrX 68535871 68536980 -94062950 + L1PA12 LINE L1 11 2080 -5501 448 317 80 76 chrX 68537134 68537396 -94062534 + L1PBb LINE L1 793 1055 -5794 4063 206 18 23 chrX 68537704 68537981 -94061949 + L1PBb LINE L1 1130 1407 -5441 2819 128 14 0 chrX 68537981 68538409 -94061521 - MER57B LTR ERV1 0 434 1 4063 206 18 23 chrX 68538409 68539085 -94060845 + L1PBb LINE L1 1407 2163 -4685 619 251 70 33 chrX 68539732 68539947 -94059983 - LTR7 LTR ERV1 0 450 228 6057 185 11 9 chrX 68540128 68541260 -94058670 - HERVH LTR ERV1 0 7713 6580 821 204 6 6 chrX 68541361 68541542 -94058388 - HERVH LTR ERV1 -1297 6416 6236 190 253 148 37 chrX 68541553 68541715 -94058215 - L2 LINE L2 -1810 1504 1325 12194 180 9 21 chrX 68541715 68544537 -94055393 - HERVH LTR ERV1 -1655 6058 3331 2100 100 0 10 chrX 68544999 68545308 -94054622 + AluSc SINE Alu 1 306 -3 227 296 0 0 chrX 68545500 68545571 -94054359 + (CAG)n Simple_repeat Simple_repeat 3 73 0 200 232 0 29 chrX 68545626 68545695 -94054235 + (CGG)n Simple_repeat Simple_repeat 2 68 0 7613 221 28 45 chrX 68547995 68551010 -94048920 - HERVH LTR ERV1 -3673 2913 1 603 246 72 26 chrX 68551014 68551209 -94048721 - LTR7 LTR ERV1 -4 446 243 2552 74 0 10 chrX 68552757 68553069 -94046861 + AluSg SINE Alu 1 309 -1 4009 130 41 8 chrX 68553069 68553685 -94046245 + LTR9B LTR ERV1 9 644 0 524 237 0 30 chrX 68553685 68553820 -94046110 + HUERS-P3 LTR ERV1 1 131 -8788 1904 199 53 25 chrX 68553930 68554328 -94045602 + HUERS-P3 LTR ERV1 121 529 -6889 579 224 77 70 chrX 68554390 68554676 -94045254 + HUERS-P3 LTR ERV1 742 1029 -7890 7358 188 16 9 chrX 68555166 68557364 -94042566 - L1PA15-16 LINE L1 -5078 1771 1 1873 198 48 17 chrX 68557528 68558648 -94041282 - L1 LINE L1 -2895 4670 3211 3059 81 19 2 chrX 68558715 68559125 -94040805 - L1PA7 LINE L1 0 6154 5738 272 231 0 0 chrX 68559135 68559200 -94040730 - L1 LINE L1 -4335 2230 2166 14753 55 14 0 chrX 68559203 68561019 -94038911 + L1P LINE L1 1 1841 -4305 268 24 24 24 chrX 68561019 68561061 -94038869 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4378 66 15 0 chrX 68561061 68561588 -94038342 - SVA Other Other -23 1363 829 11522 135 26 54 chrX 68561688 68563895 -94036035 - L1P3 LINE L1 -3841 2620 402 180 0 0 0 chrX 68563895 68563915 -94036015 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 11522 135 26 54 chrX 68563915 68564303 -94035627 - L1P3 LINE L1 -6059 402 5 274 273 22 3 chrX 68565431 68565566 -94034364 + L1 LINE L1 802 1312 -4991 6757 84 9 12 chrX 68565714 68566617 -94033313 + HUERS-P3 LTR ERV1 5785 6684 -734 6101 134 29 10 chrX 68566621 68567654 -94032276 + HUERS-P3 LTR ERV1 6938 8919 0 4123 98 14 29 chrX 68567654 68568307 -94031623 + LTR9B LTR ERV1 1 643 -1 2432 145 32 56 chrX 68568516 68569013 -94030917 + LTR19A LTR ERV1 2 486 0 2134 125 3 3 chrX 68569671 68569968 -94029962 + AluSc SINE Alu 1 297 -12 3256 151 39 6 chrX 68570160 68570670 -94029260 + L1PA8 LINE L1 6 532 -5929 15989 93 9 0 chrX 68570670 68572621 -94027309 + L1PA8 LINE L1 3371 5338 -1149 2205 105 3 0 chrX 68572621 68572915 -94027015 + AluSp SINE Alu 1 295 -18 15989 93 9 0 chrX 68572915 68574076 -94025854 + L1PA8 LINE L1 5338 6487 0 13006 192 12 9 chrX 68574762 68577165 -94022765 + L1PA13 LINE L1 34 2457 -4340 1613 104 32 4 chrX 68579238 68579488 -94020442 + L1PA15-16 LINE L1 1738 1994 -4855 1234 148 0 14 chrX 68579489 68579698 -94020232 + L1PB1 LINE L1 5946 6151 0 951 208 61 4 chrX 68579777 68580056 -94019874 + L1 LINE L1 3310 3604 -2778 6289 75 39 55 chrX 68580160 68582083 -94017847 + SVA Other Other 269 1386 0 5034 139 19 34 chrX 68582086 68582421 -94017509 + L1PA16 LINE L1 5317 5656 -510 1898 216 21 32 chrX 68582421 68582852 -94017078 + MSTB LTR MaLR 1 426 0 5034 139 19 34 chrX 68582852 68583133 -94016797 + L1PA16 LINE L1 5656 5919 -247 2304 113 0 0 chrX 68583133 68583433 -94016497 - AluSc SINE Alu -9 300 1 5034 139 19 34 chrX 68583433 68583658 -94016272 + L1PA16 LINE L1 5919 6146 -20 573 235 50 0 chrX 68583682 68583801 -94016129 + FLAM_A SINE Alu 2 126 -7 7623 234 55 28 chrX 68583801 68586074 -94013856 + L1MA6 LINE L1 570 2780 -3952 1951 144 0 47 chrX 68586074 68586393 -94013537 - AluSx SINE Alu -8 304 1 7623 234 55 28 chrX 68586393 68586801 -94013129 + L1MA6 LINE L1 2780 3176 -3556 2026 137 7 7 chrX 68586801 68587100 -94012830 + AluSx SINE Alu 1 299 -13 7623 234 55 28 chrX 68587100 68587487 -94012443 + L1MA6 LINE L1 3176 3551 -3181 780 150 0 39 chrX 68587487 68587614 -94012316 + FLAM_C SINE Alu 1 122 -11 447 68 0 0 chrX 68587616 68587675 -94012255 + (TG)n Simple_repeat Simple_repeat 2 60 0 7623 234 55 28 chrX 68587675 68587791 -94012139 + L1MA6 LINE L1 3320 3431 -3301 1300 183 33 38 chrX 68588130 68588523 -94011407 + L1MA6 LINE L1 3424 3814 -2918 1124 162 0 24 chrX 68588493 68588703 -94011227 - L1MA4 LINE L1 -251 6049 5845 * 1045 146 28 14 chrX 68588672 68588885 -94011045 + L1MA4 LINE L1 6079 6294 -6 * 11055 166 19 21 chrX 68588891 68590306 -94009624 + L1MA6 LINE L1 3765 5182 -1695 2179 119 0 0 chrX 68590306 68590592 -94009338 + AluSx SINE Alu 3 288 -24 11055 166 19 21 chrX 68590592 68590803 -94009127 + L1MA6 LINE L1 5182 5392 -1485 2282 77 6 48 chrX 68590803 68591116 -94008814 + AluSc SINE Alu 1 300 -9 11055 166 19 21 chrX 68591116 68591933 -94007997 + L1MA6 LINE L1 5392 6201 -676 3561 109 6 2 chrX 68591933 68592429 -94007501 + HERVKC4 LTR ERVK 600 1097 -6146 860 147 127 6 chrX 68592415 68592572 -94007358 + HERVKC4 LTR ERVK 586 761 -6076 * 989 171 13 0 chrX 68592855 68593013 -94006917 + HERVKC4 LTR ERVK 2330 2489 -4348 600 100 0 0 chrX 68593432 68593512 -94006418 + HERVKC4 LTR ERVK 3474 3553 -3284 * 1004 130 0 0 chrX 68593508 68593689 -94006241 + HERVKC4 LTR ERVK 2027 3807 -3030 * 3163 99 14 5 chrX 68593685 68594128 -94005802 + HERVKC4 LTR ERVK 2455 2901 -4342 1487 79 0 0 chrX 68594126 68594315 -94005615 + HERVKC4 LTR ERVK 4119 4307 -2936 * 4490 115 12 1 chrX 68594314 68594981 -94004949 + HERVKC4 LTR ERVK 4685 5358 -1885 * 7564 87 4 0 chrX 68594978 68595950 -94003980 + HERVKC4 LTR ERVK 6266 7241 -2 2322 170 24 15 chrX 68595953 68596365 -94003565 + LTR3 LTR ERVK 1 416 -16 294 100 0 0 chrX 68596387 68596427 -94003503 + HERVK3 LTR ERVK 1 40 -7203 5430 83 22 0 chrX 68596759 68597482 -94002448 + L1PA10 LINE L1 5428 6166 -2 3435 154 32 2 chrX 68597493 68598124 -94001806 + L1MA6 LINE L1 6237 6886 0 764 200 38 0 chrX 68598140 68598300 -94001630 + L1MC4a LINE L1 7293 7458 -350 1371 281 63 37 chrX 68598305 68598882 -94001048 + MLT1E LTR MaLR 2 593 0 1390 230 17 6 chrX 68598882 68599234 -94000696 + L1MD3 LINE L1 7632 7987 -8 1951 114 0 0 chrX 68599252 68599523 -94000407 + AluSx SINE Alu 40 310 -2 1288 259 23 7 chrX 68599526 68599827 -94000103 + HERV16 LTR ERVL 1676 1981 -3015 493 134 63 71 chrX 68601707 68601834 -93998096 + L1MA8 LINE L1 6160 6285 -6 21 0 0 0 chrX 68602061 68602082 -93997848 + AT_rich Low_complexity Low_complexity 1 21 0 229 192 51 115 chrX 68603682 68603760 -93996170 + MIR SINE MIR 175 247 -15 230 211 0 28 chrX 68603816 68603887 -93996043 + (TA)n Simple_repeat Simple_repeat 1 69 0 1691 47 9 0 chrX 68603951 68604164 -93995766 + L1PA7 LINE L1 5939 6153 -1 181 0 0 65 chrX 68604167 68604198 -93995732 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4634 246 47 4 chrX 68604206 68605656 -93994274 - L1M4 LINE L1 -1538 5419 3908 12269 162 39 14 chrX 68605660 68609060 -93990870 - L1MA8 LINE L1 -7 7244 3753 931 239 116 71 chrX 68609078 68609813 -93990117 - L1MA8 LINE L1 -5863 1167 400 556 239 0 0 chrX 68609821 68609934 -93989996 - L1M4 LINE L1 -6438 421 309 * 1364 211 20 0 chrX 68609928 68610289 -93989641 + L1MC2 LINE L1 4950 5318 -840 5969 175 32 32 chrX 68610311 68612490 -93987440 - L1MA9 LINE L1 -38 6274 4090 459 129 11 11 chrX 68612497 68612590 -93987340 + L1MC2 LINE L1 5314 5406 -938 8570 113 19 9 chrX 68612590 68613876 -93986054 + HSMAR2 DNA Mariner 2 1301 -1 2773 168 8 0 chrX 68613876 68614363 -93985567 + L1MC2 LINE L1 5403 5893 -451 1087 213 114 56 chrX 68614366 68614855 -93985075 - L1MEc LINE L1 -3398 2817 2319 369 283 38 13 chrX 68614886 68615123 -93984807 - L1M4 LINE L1 -2685 3461 3219 * 4081 184 39 14 chrX 68615117 68616125 -93983805 + L1MB7 LINE L1 4740 5844 -340 2215 115 0 7 chrX 68616125 68616430 -93983500 + AluSq SINE Alu 1 303 -10 4081 184 39 14 chrX 68616430 68616690 -93983240 + L1MB7 LINE L1 5844 6096 -88 254 49 0 24 chrX 68619130 68619171 -93980759 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 1598 191 7 14 chrX 68619911 68620204 -93979726 - AluJo SINE Alu -21 291 1 853 164 7 0 chrX 68622116 68622256 -93977674 - AluJ SINE Alu -6 306 166 690 176 0 0 chrX 68622257 68622365 -93977565 - AluJ SINE Alu -204 108 1 1672 152 4 36 chrX 68622391 68622667 -93977263 + AluJb SINE Alu 7 273 -39 252 207 69 0 chrX 68622670 68622728 -93977202 + GA-rich Low_complexity Low_complexity 3 64 0 1324 161 5 5 chrX 68622744 68622967 -93976963 - AluSg/x SINE Alu -4 308 86 1357 234 34 63 chrX 68623120 68623615 -93976315 + L1ME1 LINE L1 3840 4320 -1826 2704 225 112 5 chrX 68623895 68624842 -93975088 + L1ME1 LINE L1 4316 5363 -783 552 98 216 0 chrX 68624866 68624968 -93974962 + L1MA6 LINE L1 6176 6299 -1 * 2159 247 93 9 chrX 68624959 68625032 -93974898 + L1ME1 LINE L1 5375 5440 -726 219 114 0 0 chrX 68625032 68625067 -93974863 + (TA)n Simple_repeat Simple_repeat 2 36 0 2159 247 93 9 chrX 68625067 68625700 -93974230 + L1ME1 LINE L1 5440 6163 -3 1115 288 81 22 chrX 68625689 68626317 -93973613 + L1ME4a LINE L1 5412 6076 -45 * 21 0 0 0 chrX 68626353 68626374 -93973556 + AT_rich Low_complexity Low_complexity 1 21 0 622 70 0 0 chrX 68627437 68627523 -93972407 - L1PB3 LINE L1 -5 6149 6064 1408 224 6 6 chrX 68627524 68627872 -93972058 + L1 LINE L1 4771 5118 -1028 2050 111 0 31 chrX 68628179 68628467 -93971463 + AluSx SINE Alu 4 282 -30 353 319 31 39 chrX 68630312 68630541 -93969389 + L2 LINE L2 515 741 -2573 2269 99 0 3 chrX 68630702 68630995 -93968935 - AluSx SINE Alu -20 292 1 542 261 15 45 chrX 68631989 68632188 -93967742 - MER117 DNA MER1_type 0 197 5 190 156 0 0 chrX 68632315 68632347 -93967583 + L2 LINE L2 3231 3262 -10 547 286 71 12 chrX 68632353 68632521 -93967409 - L2 LINE L2 0 3272 3095 217 310 190 6 chrX 68632752 68632855 -93967075 - MIR SINE MIR -73 135 16 567 294 54 11 chrX 68633181 68633402 -93966528 - MIR SINE MIR -30 232 4 234 0 0 0 chrX 68633790 68633816 -93966114 + (A)n Simple_repeat Simple_repeat 1 26 0 1667 145 94 45 chrX 68634109 68634440 -93965490 + MER7A DNA MER2_type 1 345 -1 564 289 102 93 chrX 68634708 68635051 -93964879 + L2 LINE L2 2887 3232 -40 244 369 102 45 chrX 68635132 68635376 -93964554 + L3 LINE CR1 1319 1576 -1 1829 186 0 3 chrX 68635492 68635804 -93964126 + AluJb SINE Alu 1 311 -1 262 313 12 12 chrX 68636139 68636222 -93963708 + MIR3 SINE MIR 112 194 -14 602 187 0 0 chrX 68636388 68636495 -93963435 + FLAM_C SINE Alu 1 107 -36 633 66 0 0 chrX 68636498 68636589 -93963341 + (GGAA)n Simple_repeat Simple_repeat 4 94 0 209 213 56 32 chrX 68636634 68636731 -93963199 + MIR SINE MIR 65 207 -55 251 260 77 29 chrX 68636759 68636863 -93963067 - L3 LINE CR1 -7 1570 1462 1663 106 129 0 chrX 68637226 68637482 -93962448 - AluSx SINE Alu -3 309 21 2216 104 7 0 chrX 68637524 68637823 -93962107 - AluSx SINE Alu -11 301 1 454 273 62 6 chrX 68638282 68638443 -93961487 + L1M4 LINE L1 4489 4658 -1488 340 218 48 24 chrX 68638792 68638916 -93961014 + L1MB7 LINE L1 1538 1664 -4878 494 145 60 0 chrX 68638916 68638999 -93960931 + AluJb SINE Alu 40 127 -185 1045 271 49 61 chrX 68638999 68639196 -93960734 + L1MB7 LINE L1 1662 1860 -4965 2171 132 3 0 chrX 68639196 68639507 -93960423 - AluSx SINE Alu 0 312 1 1045 271 49 61 chrX 68639507 68640420 -93959510 + L1MB7 LINE L1 1860 2909 -3916 1158 144 5 41 chrX 68640428 68640623 -93959307 + AluJb SINE Alu 2 189 -123 2261 233 71 28 chrX 68640626 68640933 -93958997 + L1MB7 LINE L1 3033 3325 -3319 1715 170 7 33 chrX 68640933 68641239 -93958691 + AluJo SINE Alu 1 298 -14 2261 233 71 28 chrX 68641239 68641488 -93958442 + L1MB7 LINE L1 3325 3562 -3082 1968 147 3 3 chrX 68641488 68641788 -93958142 + AluSx SINE Alu 1 300 -12 2261 233 71 28 chrX 68641788 68642132 -93957798 + L1MB7 LINE L1 3562 3988 -2656 2220 84 3 7 chrX 68642132 68642429 -93957501 + AluSp SINE Alu 1 296 -17 2261 233 71 28 chrX 68642429 68642574 -93957356 + L1MB7 LINE L1 3988 4125 -2519 3242 217 111 14 chrX 68642628 68644696 -93955234 + L1MB7 LINE L1 4382 6658 -24 1516 162 11 29 chrX 68646092 68646370 -93953560 + AluJo SINE Alu 25 297 -15 1874 196 100 70 chrX 68647216 68647746 -93952184 + Tigger7 DNA MER2_type 1 546 -187 492 216 81 0 chrX 68647739 68647850 -93952080 + Tigger7 DNA MER2_type 2359 2478 -9 * 583 200 7 55 chrX 68650815 68650960 -93948970 + AluJo SINE Alu 4 141 -171 2038 121 0 10 chrX 68651101 68651390 -93948540 - AluSg SINE Alu -24 286 1 21 0 0 0 chrX 68651682 68651703 -93948227 + AT_rich Low_complexity Low_complexity 1 21 0 36 23 0 0 chrX 68652422 68652465 -93947465 + AT_rich Low_complexity Low_complexity 1 43 0 1946 162 0 0 chrX 68656352 68656648 -93943282 - 7SLRNA srpRNA srpRNA -22 298 3 195 254 127 92 chrX 68656906 68657079 -93942851 + MIR SINE MIR 81 259 -3 2110 118 0 28 chrX 68657086 68657407 -93942523 - AluSx SINE Alu 0 312 1 2059 136 0 7 chrX 68657503 68657804 -93942126 + AluSx SINE Alu 1 299 -13 378 107 0 0 chrX 68657972 68658028 -93941902 + (CA)n Simple_repeat Simple_repeat 2 57 0 1300 146 12 16 chrX 68659075 68659322 -93940608 + L1MB4 LINE L1 5758 6003 -177 570 151 7 99 chrX 68659314 68659360 -93940570 + L1MC3 LINE L1 7648 7697 -88 * 2478 57 0 0 chrX 68659360 68659658 -93940272 + AluY SINE Alu 1 298 -13 570 151 7 99 chrX 68659658 68659763 -93940167 + L1MC3 LINE L1 7697 7785 0 748 200 0 0 chrX 68661058 68661188 -93938742 + FLAM_A SINE Alu 3 132 -1 1178 149 63 127 chrX 68661810 68662126 -93937804 + AluJb SINE Alu 11 306 -6 437 88 15 0 chrX 68662128 68662196 -93937734 + L1MB3 LINE L1 6105 6173 -10 481 294 95 13 chrX 68662363 68662678 -93937252 - L1MC4a LINE L1 -358 5825 5594 367 282 55 0 chrX 68662998 68663108 -93936822 - L1MC4a LINE L1 -2203 5605 5490 325 214 107 36 chrX 68663126 68663294 -93936636 - L1MC4a LINE L1 -2375 5433 5254 61 0 0 0 chrX 68663368 68663429 -93936501 + AT_rich Low_complexity Low_complexity 1 61 0 2899 68 51 23 chrX 68663685 68664158 -93935772 + LTR21A LTR ERV1 1 486 -19 1205 152 103 42 chrX 68664503 68664766 -93935164 + AluJo SINE Alu 15 293 -19 552 219 27 139 chrX 68665194 68665495 -93934435 + MER21B LTR ERV1 1 267 -596 333 174 0 12 chrX 68665562 68665635 -93934295 + MER21B LTR ERV1 680 821 -110 2435 69 0 3 chrX 68666021 68666324 -93933606 + AluY SINE Alu 1 302 -9 1128 216 40 59 chrX 68666692 68667109 -93932821 + MER68 LTR ERV1 29 509 -53 1289 125 0 0 chrX 68667635 68667835 -93932095 + LTR9B LTR ERV1 445 644 0 468 163 31 51 chrX 68667835 68667933 -93931997 + HUERS-P3b LTR ERV1 1 96 -7322 794 96 118 7 chrX 68667936 68668072 -93931858 + HUERS-P3b LTR ERV1 409 559 -6859 13237 87 142 124 chrX 68668080 68671083 -93928847 + HUERS-P3b LTR ERV1 747 3874 -3544 * 18426 70 53 10 chrX 68671082 68673671 -93926259 + HUERS-P3b LTR ERV1 4719 7417 -1 3056 113 27 12 chrX 68673672 68674183 -93925747 + LTR9B LTR ERV1 42 560 -84 1548 156 9 78 chrX 68674381 68674714 -93925216 + AluJb SINE Alu 1 310 -2 2126 135 0 3 chrX 68675241 68675545 -93924385 + AluSx SINE Alu 1 303 -9 847 130 8 0 chrX 68675657 68675780 -93924150 - FRAM SINE Alu -16 160 37 21 36 0 0 chrX 68676554 68676582 -93923348 + AT_rich Low_complexity Low_complexity 1 28 0 1316 194 27 46 chrX 68676973 68677099 -93922831 - MER58B DNA MER1_type -2097 323 196 2448 70 3 0 chrX 68677099 68677397 -93922533 + AluSp SINE Alu 1 299 -14 1316 194 27 46 chrX 68677397 68677599 -93922331 - MER58B DNA MER1_type -2224 196 1 1012 93 22 88 chrX 68677752 68677978 -93921952 - L1MB2 LINE L1 -37 6134 5924 2304 84 3 7 chrX 68678110 68678406 -93921524 + AluSx SINE Alu 1 295 -17 27 29 0 0 chrX 68678411 68678445 -93921485 + AT_rich Low_complexity Low_complexity 1 34 0 452 267 0 17 chrX 68678811 68678927 -93921003 + MER20B DNA MER1_type 60 173 -610 2186 108 14 0 chrX 68679062 68679358 -93920572 + AluSx SINE Alu 1 300 -12 1777 157 37 13 chrX 68679649 68679948 -93919982 - AluJb SINE Alu -6 306 1 1452 140 107 67 chrX 68679962 68680262 -93919668 - AluJo SINE Alu 0 312 1 333 272 117 34 chrX 68680520 68680726 -93919204 - MER102a DNA MER1_type -16 314 92 270 161 21 97 chrX 68680835 68680927 -93919003 + MER112 DNA MER1_type 29 113 -147 979 186 55 0 chrX 68680927 68681126 -93918804 + MER2 DNA MER2_type 1 210 -135 203 234 0 31 chrX 68681293 68681357 -93918573 + T-rich Low_complexity Low_complexity 1 62 0 419 209 146 0 chrX 68681604 68681714 -93918216 + MER2 DNA MER2_type 27 152 -193 2234 112 6 10 chrX 68682488 68682800 -93917130 + AluSx SINE Alu 1 311 -1 2096 102 49 0 chrX 68682865 68683149 -93916781 + AluSp SINE Alu 1 298 -15 1704 179 55 9 chrX 68683297 68683626 -93916304 + MER2 DNA MER2_type 1 344 0 768 178 0 0 chrX 68684360 68684478 -93915452 + FLAM_C SINE Alu 1 118 -15 234 0 0 0 chrX 68684487 68684513 -93915417 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1992 156 3 3 chrX 68684692 68685000 -93914930 + AluJb SINE Alu 1 308 -4 989 205 105 0 chrX 68686115 68686315 -93913615 + MER58A DNA MER1_type 2 222 -2 23 86 0 0 chrX 68686540 68686598 -93913332 + AT_rich Low_complexity Low_complexity 1 58 0 258 281 55 55 chrX 68686766 68686930 -93913000 + L1ME4a LINE L1 5389 5552 -569 320 221 87 82 chrX 68686932 68687140 -93912790 + L1ME4a LINE L1 5644 5852 -269 2047 147 3 6 chrX 68687264 68687576 -93912354 + AluJb SINE Alu 1 311 -1 21 71 0 0 chrX 68687576 68687618 -93912312 + AT_rich Low_complexity Low_complexity 1 42 0 2249 97 0 13 chrX 68687655 68687955 -93911975 + AluSg SINE Alu 1 296 -14 937 182 198 0 chrX 68688632 68688819 -93911111 + MER58A DNA MER1_type 1 224 0 1095 153 5 77 chrX 68689035 68689244 -93910686 - AluJo SINE Alu -118 194 1 27 62 0 0 chrX 68689645 68689693 -93910237 + AT_rich Low_complexity Low_complexity 1 48 0 2237 106 0 3 chrX 68689703 68689996 -93909934 + AluSg SINE Alu 5 296 -14 1680 152 94 0 chrX 68690123 68690400 -93909530 - AluSg SINE Alu -7 303 1 1774 159 41 7 chrX 68690755 68691045 -93908885 + AluJb SINE Alu 1 300 -12 1130 151 6 0 chrX 68691544 68691716 -93908214 + AluJb SINE Alu 140 312 0 2250 79 7 7 chrX 68692106 68692398 -93907532 - AluSc SINE Alu -15 294 3 822 142 22 8 chrX 68692399 68692533 -93907397 - AluJo SINE Alu -176 136 1 768 166 0 43 chrX 68692876 68693015 -93906915 + FLAM_C SINE Alu 1 133 0 371 264 176 28 chrX 68693039 68693243 -93906687 + MIR SINE MIR 19 250 -12 752 194 85 0 chrX 68693740 68693905 -93906025 - MER58A DNA MER1_type 0 224 46 232 229 290 15 chrX 68694455 68694586 -93905344 + L2 LINE L2 3126 3292 -21 237 232 18 18 chrX 68694826 68694882 -93905048 + MER5A DNA MER1_type 123 178 -11 554 133 0 38 chrX 68694954 68695059 -93904871 + FLAM_C SINE Alu 43 143 0 432 121 0 0 chrX 68696352 68696418 -93903512 - AluSq SINE Alu -11 301 236 1332 87 12 0 chrX 68696418 68696591 -93903339 - AluSq SINE Alu -138 175 1 2362 59 14 0 chrX 68697476 68697762 -93902168 + AluSc SINE Alu 1 290 -19 327 273 106 34 chrX 68697784 68698132 -93901798 - L1ME4a LINE L1 -121 6000 5630 258 258 31 10 chrX 68698818 68698830 -93901100 + L1MC4 LINE L1 7924 7934 -108 2123 134 20 9 chrX 68698830 68699174 -93900756 + MER7A DNA MER2_type 1 346 0 258 258 31 10 chrX 68699174 68699258 -93900672 + L1MC4 LINE L1 7934 8022 -20 283 104 0 0 chrX 68700082 68700130 -93899800 + MADE1 DNA Mariner 33 80 0 403 254 104 30 chrX 68700133 68700267 -93899663 - MER58A DNA MER1_type 0 144 1 1949 150 13 7 chrX 68700285 68700592 -93899338 + AluJo SINE Alu 1 309 -3 185 152 30 0 chrX 68700867 68700900 -93899030 + L2 LINE L2 3235 3268 -4 543 208 145 69 chrX 68700905 68701064 -93898866 - L2 LINE L2 0 3272 3102 180 355 66 0 chrX 68701708 68701784 -93898146 - MIR3 SINE MIR -35 173 93 796 128 64 0 chrX 68702457 68702582 -93897348 + FLAM_C SINE Alu 1 133 0 2031 144 3 3 chrX 68702859 68703164 -93896766 + AluJb SINE Alu 1 305 -7 354 244 263 0 chrX 68703430 68703635 -93896295 + L1ME4a LINE L1 5782 6040 -81 624 233 27 0 chrX 68704054 68704204 -93895726 + L1ME LINE L1 5526 5679 -442 621 292 39 27 chrX 68704641 68704898 -93895032 + MIR SINE MIR 3 262 0 2169 98 14 10 chrX 68704921 68705218 -93894712 + AluSx SINE Alu 1 298 -14 22 0 0 0 chrX 68707701 68707723 -93892207 + AT_rich Low_complexity Low_complexity 1 22 0 2009 133 0 20 chrX 68707728 68708030 -93891900 + AluJo SINE Alu 3 298 -14 981 140 0 6 chrX 68708840 68709004 -93890926 - L1MB8 LINE L1 -2 6176 6014 2013 216 2 8 chrX 68709005 68709403 -93890527 - MSTD LTR MaLR 0 396 1 1102 182 4 52 chrX 68709451 68709682 -93890248 + AluJo SINE Alu 1 220 -92 426 20 0 0 chrX 68709682 68709731 -93890199 + AluSq/x SINE Alu 86 134 -178 1279 88 0 6 chrX 68709731 68709902 -93890028 - AluSg SINE Alu -140 170 1 2293 105 3 0 chrX 68710399 68710695 -93889235 + AluSg SINE Alu 1 297 -13 1744 196 37 82 chrX 68710917 68711366 -93888564 + MLT2C2 LTR ERVL 1 428 -36 216 97 0 0 chrX 68711366 68711397 -93888533 + (CA)n Simple_repeat Simple_repeat 1 31 0 1744 196 37 82 chrX 68711397 68711433 -93888497 + MLT2C2 LTR ERVL 428 464 0 2015 154 0 13 chrX 68711734 68711868 -93888062 + AluJb SINE Alu 3 137 -175 2332 103 0 3 chrX 68711868 68712170 -93887760 + AluSx SINE Alu 1 301 -11 2015 154 0 13 chrX 68712170 68712347 -93887583 + AluJb SINE Alu 137 310 -2 233 300 70 10 chrX 68713306 68713406 -93886524 + MIR SINE MIR 16 121 -87 5846 229 72 9 chrX 68713556 68715241 -93884689 + L1M4 LINE L1 2368 4158 -1988 3845 200 27 29 chrX 68715241 68715888 -93884042 + L1M4 LINE L1 3900 4546 -1600 2491 82 0 0 chrX 68715888 68716191 -93883739 - AluSg SINE Alu -7 303 1 3845 200 27 29 chrX 68716191 68716446 -93883484 + L1M4 LINE L1 4546 4800 -1346 812 264 33 16 chrX 68716467 68716774 -93883156 + HAL1 LINE L1 2001 2312 -195 515 167 98 20 chrX 68716794 68716896 -93883034 + FLAM_A SINE Alu 23 132 -10 2067 78 74 7 chrX 68717059 68717343 -93882587 - AluSc SINE Alu -6 303 1 198 194 85 133 chrX 68718575 68718740 -93881190 - L2 LINE L2 -145 3168 3012 1878 137 10 26 chrX 68718989 68719296 -93880634 + AluJb SINE Alu 1 302 -10 1973 142 14 0 chrX 68719367 68719648 -93880282 - AluSx SINE Alu -27 285 1 2333 87 23 0 chrX 68719796 68720095 -93879835 - AluSx SINE Alu -6 306 1 1954 159 0 7 chrX 68720415 68720716 -93879214 - AluJb SINE Alu -13 299 1 2589 52 3 7 chrX 68720790 68721100 -93878830 - AluY SINE Alu -2 309 1 2351 112 6 0 chrX 68721101 68721450 -93878480 - L1P5 LINE L1 -371 5785 5435 449 282 0 0 chrX 68721939 68722070 -93877860 + Charlie8 DNA MER1_type 12 142 -2275 2358 89 3 0 chrX 68722070 68722363 -93877567 + AluSp SINE Alu 1 294 -19 2163 178 27 49 chrX 68722715 68722813 -93877117 + L1MDa LINE L1 21 120 -6420 2388 77 0 17 chrX 68722813 68723111 -93876819 + AluSg SINE Alu 1 293 -17 2163 178 27 49 chrX 68723111 68723395 -93876535 + L1MDa LINE L1 120 394 -6146 2295 87 0 3 chrX 68723395 68723682 -93876248 + AluSg SINE Alu 1 286 -24 2163 178 27 49 chrX 68723682 68723748 -93876182 + L1MDa LINE L1 394 460 -6080 2865 231 55 48 chrX 68723750 68724005 -93875925 + L1M4 LINE L1 3832 4084 -2062 2335 116 3 0 chrX 68724005 68724316 -93875614 + AluSx SINE Alu 1 312 0 2865 231 55 48 chrX 68724316 68725085 -93874845 + L1M4 LINE L1 4084 4863 -1283 1007 202 0 0 chrX 68725877 68726050 -93873880 - FAM SINE Alu 0 49 1 2462 85 3 0 chrX 68727890 68728195 -93871735 - AluSp SINE Alu -7 306 1 2036 131 0 10 chrX 68728392 68728689 -93871241 + AluJb SINE Alu 1 294 -18 275 286 25 17 chrX 68728888 68729007 -93870923 - MER31B-int LTR ERV1 -4763 173 54 3784 143 54 11 chrX 68729136 68729779 -93870151 + LTR51 LTR ERV1 1 671 0 1888 176 0 0 chrX 68729847 68730143 -93869787 + AluSx SINE Alu 5 300 -12 2252 82 7 0 chrX 68730144 68730423 -93869507 + AluSp SINE Alu 1 281 -32 306 125 0 0 chrX 68730427 68730475 -93869455 + (GGAGA)n Simple_repeat Simple_repeat 5 52 0 2464 80 3 0 chrX 68730477 68730789 -93869141 + AluSq SINE Alu 1 313 0 648 167 61 116 chrX 68730864 68731062 -93868868 - MER31B LTR ERV1 -87 379 193 892 99 0 106 chrX 68731093 68731216 -93868714 + AluSq/x SINE Alu 2 108 -204 2289 107 0 28 chrX 68731216 68731534 -93868396 - AluSc SINE Alu 0 309 1 892 99 0 106 chrX 68731534 68731561 -93868369 + AluSq/x SINE Alu 108 136 -176 2180 126 0 3 chrX 68731562 68731855 -93868075 + AluSg SINE Alu 1 292 -18 1238 159 19 104 chrX 68731868 68732200 -93867730 + AluSq SINE Alu 1 306 0 496 244 15 30 chrX 68732200 68732331 -93867599 - MER31B LTR ERV1 -337 129 1 2289 101 0 7 chrX 68732560 68732866 -93867064 - AluSg SINE Alu -6 304 1 3013 169 61 81 chrX 68733011 68733753 -93866177 - LTR8A LTR ERV1 0 727 1 1249 183 93 16 chrX 68734482 68734793 -93865137 + LTR1 LTR ERV1 31 365 -420 * 1688 143 54 54 chrX 68734764 68735114 -93864816 + LTR1 LTR ERV1 203 552 -233 192 309 37 25 chrX 68735976 68736057 -93863873 + L3b LINE CR1 1371 1452 -131 * 407 257 51 47 chrX 68736056 68736225 -93863705 - MIR3 SINE MIR -2 206 32 537 215 12 110 chrX 68737159 68737405 -93862525 + L1MC5 LINE L1 7540 7761 -200 263 253 51 25 chrX 68737413 68737492 -93862438 + L1MC5 LINE L1 7833 7913 -48 234 269 13 39 chrX 68739303 68739381 -93860549 - L3 LINE CR1 -93 1484 1409 214 180 0 20 chrX 68739386 68739436 -93860494 + (CCCCG)n Simple_repeat Simple_repeat 1 49 0 2098 81 33 4 chrX 68739442 68739713 -93860217 - AluSg SINE Alu -31 279 1 497 273 40 10 chrX 68740380 68740578 -93859352 + L2 LINE L2 3110 3313 0 276 48 24 24 chrX 68740611 68740653 -93859277 + MER39B LTR ERV1 1 42 -611 842 141 0 0 chrX 68740653 68740788 -93859142 + L1 LINE L1 4914 5048 -1098 2023 143 3 13 chrX 68740798 68741113 -93858817 + AluSq SINE Alu 1 312 -1 1650 95 0 5 chrX 68741163 68741385 -93858545 - AluSg/x SINE Alu -10 300 80 1552 92 22 4 chrX 68741385 68741613 -93858317 + L1MA3 LINE L1 6074 6305 0 3257 168 38 35 chrX 68741640 68741866 -93858064 + MER39 LTR ERV1 75 299 -408 1643 132 66 26 chrX 68741866 68742039 -93857891 - AluSx SINE Alu 0 306 116 2178 107 7 3 chrX 68742039 68742338 -93857592 - AluSx SINE Alu -12 300 1 1643 132 66 26 chrX 68742338 68742459 -93857471 - AluSx SINE Alu -190 116 1 3257 168 38 35 chrX 68742459 68742862 -93857068 + MER39 LTR ERV1 299 707 0 385 290 119 23 chrX 68742863 68743166 -93856764 + L1MC4a LINE L1 5836 6167 -1641 704 256 75 62 chrX 68743562 68743748 -93856182 + L1ME LINE L1 5508 5701 -420 2355 112 0 0 chrX 68743748 68744052 -93855878 + AluSx SINE Alu 1 304 -8 704 256 75 62 chrX 68744052 68744173 -93855757 + L1ME LINE L1 5701 5819 -302 1382 174 110 82 chrX 68744252 68744426 -93855504 - MER31B LTR ERV1 0 466 298 2263 91 0 3 chrX 68744426 68744712 -93855218 - AluSg SINE Alu -18 292 8 1382 174 110 82 chrX 68744712 68744990 -93854940 - MER31B LTR ERV1 -168 298 1 754 253 71 82 chrX 68744991 68745171 -93854759 - MER31B-int LTR ERV1 -21 4915 4734 2154 119 3 3 chrX 68745171 68745482 -93854448 + AluSq SINE Alu 1 311 -2 754 253 71 82 chrX 68745482 68745740 -93854190 - MER31B-int LTR ERV1 -202 4734 4482 359 145 193 12 chrX 68745983 68746066 -93853864 - LTR37A LTR ERV1 -325 101 4 9562 143 39 53 chrX 68746089 68746837 -93853093 - MER31B-int LTR ERV1 -727 4209 3452 2570 58 0 0 chrX 68746837 68747132 -93852798 + AluSc SINE Alu 1 295 -14 9562 143 39 53 chrX 68747132 68747750 -93852180 - MER31B-int LTR ERV1 -1484 3452 2827 2265 98 0 13 chrX 68747750 68748065 -93851865 - AluY SINE Alu 0 311 1 1986 148 0 3 chrX 68748068 68748365 -93851565 - AluJo SINE Alu -16 296 1 9562 143 39 53 chrX 68748365 68748591 -93851339 - MER31B-int LTR ERV1 -2111 2825 2597 2426 78 3 0 chrX 68748591 68748886 -93851044 + AluSq SINE Alu 1 296 -17 9562 143 39 53 chrX 68748886 68749733 -93850197 - MER31B-int LTR ERV1 -2339 2597 292 2120 189 27 35 chrX 68749797 68750125 -93849805 - L1 LINE L1 -1288 4858 4534 1771 164 27 3 chrX 68750125 68750417 -93849513 + AluJo SINE Alu 2 300 -12 2120 189 27 35 chrX 68750417 68750569 -93849361 - L1 LINE L1 -1612 4534 4382 1418 116 5 10 chrX 68750572 68750770 -93849160 - AluSg/x SINE Alu -14 298 102 3323 112 44 18 chrX 68750771 68751261 -93848669 - L1M2 LINE L1 -503 5797 5291 207 0 0 0 chrX 68751261 68751284 -93848646 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3323 112 44 18 chrX 68751284 68751417 -93848513 - L1M2 LINE L1 -1009 5291 5163 * 9720 130 17 58 chrX 68751414 68751511 -93848419 - L1M4c LINE L1 -4644 1740 1641 2504 79 0 0 chrX 68751511 68751814 -93848116 - AluSg SINE Alu -7 303 1 9720 130 17 58 chrX 68751814 68752090 -93847840 - L1M4c LINE L1 -4743 1641 1355 1787 189 0 10 chrX 68752090 68752381 -93847549 - AluJo SINE Alu -24 288 1 9720 130 17 58 chrX 68752381 68752771 -93847159 - L1M4c LINE L1 -5029 1355 951 2473 96 0 10 chrX 68752771 68753085 -93846845 - AluSp SINE Alu -2 311 1 9720 130 17 58 chrX 68753085 68754083 -93845847 - L1M4c LINE L1 -5433 951 60 2382 81 0 3 chrX 68754083 68754381 -93845549 - AluY SINE Alu -14 297 1 9720 130 17 58 chrX 68754381 68754435 -93845495 - L1M4c LINE L1 -6324 60 5 2027 216 13 41 chrX 68755665 68756127 -93843803 + LTR2 LTR ERV1 1 449 0 1852 174 79 76 chrX 68756736 68757012 -93842918 + LTR55 LTR ERV 1 281 -267 2492 132 91 5 chrX 68757012 68757406 -93842524 + MSTA LTR MaLR 1 428 0 1852 174 79 76 chrX 68757406 68757658 -93842272 + LTR55 LTR ERV 281 531 -17 2592 50 0 0 chrX 68758388 68758689 -93841241 - AluY SINE Alu -6 305 5 2044 140 19 3 chrX 68758694 68759001 -93840929 - AluSx SINE Alu 0 312 1 2537 75 0 0 chrX 68760233 68760540 -93839390 - AluSc SINE Alu -2 307 1 2106 113 3 3 chrX 68760540 68760832 -93839098 - AluSx SINE Alu -20 292 1 2016 159 0 0 chrX 68760838 68761139 -93838791 - AluJb SINE Alu -11 301 1 515 341 34 40 chrX 68761549 68762119 -93837811 + MERVL LTR ERVL 1409 2057 -1577 2000 149 105 11 chrX 68762535 68762897 -93837033 - MSTD LTR MaLR 0 396 1 263 302 21 31 chrX 68763544 68763640 -93836290 + MERVL LTR ERVL 3831 3925 -1560 1978 79 97 18 chrX 68764317 68764596 -93835334 + AluSg1 SINE Alu 1 301 -8 1596 209 3 7 chrX 68764606 68764902 -93835028 + AluJb SINE Alu 1 295 -17 1799 59 0 5 chrX 68765968 68766269 -93833661 + AluY SINE Alu 66 365 0 2520 58 0 0 chrX 68766480 68766775 -93833155 - AluY SINE Alu -16 295 1 646 133 0 112 chrX 68766871 68767014 -93832916 + MLT2D LTR ERVL 1 127 -287 6770 169 102 154 chrX 68767020 68769587 -93830343 + L1MA8 LINE L1 1 2699 -4407 230 158 0 0 chrX 68769587 68769625 -93830305 - 5S rRNA rRNA -82 39 2 6770 169 102 154 chrX 68769625 68770464 -93829466 + L1MA8 LINE L1 2699 3580 -3526 2315 91 0 3 chrX 68770464 68770760 -93829170 + AluSx SINE Alu 1 295 -17 6770 169 102 154 chrX 68770760 68770957 -93828973 + L1MA8 LINE L1 3580 3168 -3938 1414 187 53 20 chrX 68770957 68771257 -93828673 + AluJo SINE Alu 3 312 0 6770 169 102 154 chrX 68771257 68771273 -93828657 + L1MA8 LINE L1 3167 3182 -3924 6046 55 0 0 chrX 68771277 68771971 -93827959 - L1PA6 LINE L1 0 6154 5461 5102 156 48 29 chrX 68771971 68772217 -93827713 + L1MA8 LINE L1 3939 4179 -2927 2354 94 3 0 chrX 68772217 68772515 -93827415 - AluSp SINE Alu -14 299 1 5102 156 48 29 chrX 68772515 68772969 -93826961 + L1MA8 LINE L1 4179 4673 -2433 1716 181 19 10 chrX 68772969 68773278 -93826652 + AluJb SINE Alu 1 312 0 5102 156 48 29 chrX 68773278 68773673 -93826257 + L1MA8 LINE L1 4673 5059 -2047 1964 65 108 14 chrX 68774021 68774300 -93825630 + AluY SINE Alu 1 305 -6 7138 130 29 46 chrX 68774926 68776462 -93823468 + L1MA8 LINE L1 5044 6531 -720 1601 210 0 4 chrX 68776462 68776738 -93823192 + AluJo SINE Alu 1 275 -37 7138 130 29 46 chrX 68776738 68777441 -93822489 + L1MA8 LINE L1 6531 7244 -7 1419 133 32 124 chrX 68777441 68777793 -93822137 + MLT2D LTR ERVL 85 414 0 13210 196 44 24 chrX 68779463 68779542 -93820388 - ERVL LTR ERVL -2344 3420 3344 1555 173 30 26 chrX 68779542 68779813 -93820117 + AluJo SINE Alu 11 282 -30 13210 196 44 24 chrX 68779813 68782461 -93817469 - ERVL LTR ERVL -2420 3344 556 286 134 45 60 chrX 68782604 68782671 -93817259 + MSTD LTR MaLR 1 66 -362 * 957 90 19 65 chrX 68782661 68782816 -93817114 + MSTD LTR MaLR 249 396 0 191 225 0 0 chrX 68784109 68784149 -93815781 - MIR SINE MIR 0 262 223 1812 142 13 48 chrX 68784237 68784548 -93815382 - AluSx SINE Alu -8 304 5 255 157 0 0 chrX 68784875 68784926 -93815004 + GA-rich Low_complexity Low_complexity 2 52 0 971 151 0 0 chrX 68786484 68786630 -93813300 + FRAM SINE Alu 1 145 -31 283 299 109 35 chrX 68787381 68787555 -93812375 - MIR SINE MIR -11 251 65 9665 166 22 25 chrX 68787592 68789512 -93810418 - L1 LINE L1 -1479 6086 4173 216 0 0 0 chrX 68789947 68789971 -93809959 + (T)n Simple_repeat Simple_repeat 1 24 0 3073 158 25 16 chrX 68790328 68791236 -93808694 - L1 LINE L1 -3350 4215 3301 2536 60 0 0 chrX 68791262 68791560 -93808370 + AluY SINE Alu 3 300 -11 324 248 28 99 chrX 68791699 68791840 -93808090 + L2 LINE L2 3178 3308 -5 2447 70 3 3 chrX 68791840 68792138 -93807792 + AluSp SINE Alu 1 298 -15 434 208 198 10 chrX 68792372 68792473 -93807457 + L2 LINE L2 3192 3311 -2 414 312 18 46 chrX 68792667 68792845 -93807085 - MIR SINE MIR -68 140 17 2331 103 0 0 chrX 68793411 68793713 -93806217 + AluSx SINE Alu 3 304 -8 209 156 0 22 chrX 68794378 68794423 -93805507 + CT-rich Low_complexity Low_complexity 1 44 0 444 242 17 42 chrX 68794490 68794610 -93805320 + MIR SINE MIR 30 146 -62 351 227 30 45 chrX 68794813 68794870 -93805060 - MER113 DNA MER1_type? -391 130 74 3949 97 51 3 chrX 68794870 68795438 -93804492 + LTR49 LTR ERV1 1 595 0 351 227 30 45 chrX 68795438 68795512 -93804418 - MER113 DNA MER1_type? -447 74 1 1148 140 0 6 chrX 68795581 68795752 -93804178 - AluSg/x SINE Alu -12 300 131 858 143 7 7 chrX 68795788 68795928 -93804002 + AluJb SINE Alu 139 278 -34 288 0 0 0 chrX 68795928 68795960 -93803970 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 414 0 0 0 chrX 68795959 68796005 -93803925 + (CA)n Simple_repeat Simple_repeat 1 46 0 223 231 19 0 chrX 68796034 68796086 -93803844 + MIR3 SINE MIR 150 202 -6 2262 294 88 33 chrX 68796966 68797740 -93802190 + L1M4 LINE L1 9 864 -5678 6388 93 19 17 chrX 68797740 68798999 -93800931 - L1PB2 LINE L1 -2 6149 4869 2262 294 88 33 chrX 68798999 68799333 -93800597 + L1M4 LINE L1 864 1178 -5364 2637 213 21 51 chrX 68799928 68800106 -93799824 + L1M4 LINE L1 1171 1353 -5293 1965 171 0 7 chrX 68800106 68800405 -93799525 + AluJb SINE Alu 1 297 -15 2165 132 0 0 chrX 68800409 68800705 -93799225 + AluSx SINE Alu 1 296 -16 2637 213 21 51 chrX 68800705 68801292 -93798638 + L1M4 LINE L1 1356 1918 -4728 2114 137 3 6 chrX 68801292 68801605 -93798325 + AluSx SINE Alu 1 312 0 7030 175 77 18 chrX 68801608 68801683 -93798247 + L1MCa LINE L1 17 86 -6340 2109 100 13 10 chrX 68801683 68801983 -93797947 + AluSq SINE Alu 1 301 -12 7030 175 77 18 chrX 68801983 68804102 -93795828 + L1MCa LINE L1 86 2435 -3991 1758 186 3 0 chrX 68804107 68804398 -93795532 + 7SLRNA srpRNA srpRNA 1 292 -28 1895 231 24 45 chrX 68804514 68805065 -93794865 + L1MCa LINE L1 2471 3009 -3417 328 128 0 0 chrX 68805066 68805353 -93794577 + AluSx SINE Alu 37 323 0 6046 153 4 30 chrX 68805353 68806173 -93793757 + L1P4 LINE L1 3853 4640 -1506 2295 107 0 0 chrX 68806173 68806473 -93793457 + AluSq SINE Alu 5 304 -9 6046 153 4 30 chrX 68806473 68806716 -93793214 + L1P4 LINE L1 4640 4888 -1258 1134 165 67 0 chrX 68806716 68806910 -93793020 + AluJb SINE Alu 85 291 -21 26 0 0 0 chrX 68806910 68806936 -93792994 + AT_rich Low_complexity Low_complexity 1 26 0 2939 126 18 17 chrX 68806936 68807527 -93792403 + L1P4 LINE L1 4873 5468 -693 2216 95 0 0 chrX 68807527 68807857 -93792073 - AluY SINE Alu 0 330 1 1036 131 23 34 chrX 68807873 68808023 -93791907 - AluSg/x SINE Alu -26 284 135 2333 95 0 10 chrX 68808023 68808328 -93791602 - AluSp SINE Alu -11 302 1 1036 131 23 34 chrX 68808328 68808353 -93791577 - AluSg/x SINE Alu -175 135 111 546 253 45 15 chrX 68808995 68809193 -93790737 + L2 LINE L2 3110 3313 0 275 48 24 24 chrX 68809226 68809268 -93790662 + MER39B LTR ERV1 1 42 -611 688 112 0 0 chrX 68809268 68809366 -93790564 + L1 LINE L1 4914 5011 -1135 14501 93 12 7 chrX 68809539 68811625 -93788305 - L1P LINE L1 -750 5396 3300 10049 181 85 10 chrX 68811726 68813924 -93786006 + L1PA13 LINE L1 2969 5332 -814 366 122 0 81 chrX 68813925 68813986 -93785944 + LTR7 LTR ERV1 346 402 -48 180 0 0 0 chrX 68813986 68814006 -93785924 + (CA)n Simple_repeat Simple_repeat 1 20 0 366 122 0 81 chrX 68814006 68814018 -93785912 + LTR7 LTR ERV1 402 413 -37 5019 131 11 40 chrX 68814018 68814055 -93785875 + L1PA13 LINE L1 5332 5369 -794 2621 46 0 0 chrX 68814055 68814358 -93785572 + AluY SINE Alu 1 303 -8 5019 131 11 40 chrX 68814358 68815177 -93784753 + L1PA13 LINE L1 5369 6163 0 4637 144 23 3 chrX 68815177 68815900 -93784030 + L1PA16 LINE L1 5413 6156 -10 5498 80 69 12 chrX 68816031 68816828 -93783102 - SVA Other Other -544 842 1 6002 40 15 3 chrX 68816838 68817588 -93782342 + L1PA4 LINE L1 1814 2572 -3574 14354 24 1 0 chrX 68817588 68819942 -93779988 + L1PA4 LINE L1 3793 6152 -3 207 0 0 0 chrX 68819949 68819972 -93779958 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3155 255 57 12 chrX 68819972 68820812 -93779118 - L1M3f LINE L1 -4392 936 59 5564 200 34 17 chrX 68820907 68821782 -93778148 - L1 LINE L1 -1974 5234 4328 2002 138 3 7 chrX 68821782 68822073 -93777857 - AluSg SINE Alu -20 290 1 5564 200 34 17 chrX 68822073 68822506 -93777424 - L1 LINE L1 -2880 4328 3904 1554 150 21 131 chrX 68822511 68822885 -93777045 - MER7A DNA MER2_type -14 332 2 2158 173 88 18 chrX 68822896 68823062 -93776868 + MSTA LTR MaLR 1 154 -274 2328 96 7 0 chrX 68823062 68823363 -93776567 + AluSp SINE Alu 6 308 -5 2158 173 88 18 chrX 68823363 68823596 -93776334 + MSTA LTR MaLR 154 428 0 4314 171 18 4 chrX 68823596 68824339 -93775591 + MSTA-int LTR MaLR 1 753 -898 3780 220 5 20 chrX 68824358 68825278 -93774652 - L1PA12 LINE L1 -3363 4221 3315 2518 282 41 65 chrX 68825270 68826775 -93773155 - L1PA12 LINE L1 -5577 2004 7 * 963 214 15 20 chrX 68826862 68827058 -93772872 - MLT1E LTR MaLR 0 593 399 2575 147 49 2 chrX 68827058 68827195 -93772735 - L1MA4A LINE L1 -371 5932 5803 315 0 0 0 chrX 68827195 68827230 -93772700 + (TG)n Simple_repeat Simple_repeat 2 36 0 2575 147 49 2 chrX 68827230 68827541 -93772389 - L1MA4A LINE L1 -500 5803 5463 3099 298 70 83 chrX 68827542 68829273 -93770657 - L1 LINE L1 -5355 1854 135 2294 64 0 3 chrX 68880119 68880593 -93719337 + AluY SINE Alu 2 474 0 2025 181 19 26 chrX 68881714 68881892 -93718038 + L1M4 LINE L1 3527 3705 -2441 1920 100 4 4 chrX 68881892 68882199 -93717731 + AluSg SINE Alu 1 307 0 2025 181 19 26 chrX 68882199 68882434 -93717496 + L1M4 LINE L1 3705 3938 -2208 1404 159 63 7 chrX 68882437 68882707 -93717223 + L1MC1 LINE L1 6044 6328 -5 183 356 11 23 chrX 68882733 68882820 -93717110 - MIR SINE MIR -172 90 5 1782 204 46 88 chrX 68882948 68883758 -93716172 + L1MA9 LINE L1 1888 6676 -30 286 198 40 50 chrX 68883764 68883865 -93716065 + L1MDa LINE L1 1877 1976 -4566 2149 172 48 0 chrX 68883869 68884241 -93715689 + MLT1B LTR MaLR 1 390 0 1171 223 50 16 chrX 68884250 68884632 -93715298 + L1MDa LINE L1 2082 2476 -4066 206 77 26 26 chrX 68884652 68884691 -93715239 + (TA)n Simple_repeat Simple_repeat 1 39 0 1873 190 10 25 chrX 68884700 68885094 -93714836 - MLT1B LTR MaLR -2 388 1 891 173 0 50 chrX 68885111 68885290 -93714640 + AluJo SINE Alu 1 170 -142 3776 222 43 51 chrX 68885321 68886765 -93713165 + L1ME2 LINE L1 2041 3463 -2919 841 138 0 36 chrX 68886765 68886903 -93713027 + FLAM_C SINE Alu 1 133 0 3776 222 43 51 chrX 68886903 68887198 -93712732 + L1ME2 LINE L1 3463 3759 -2623 3413 135 7 4 chrX 68887200 68887215 -93712715 + L1M1 LINE L1 12 25 -7540 2074 112 3 0 chrX 68887215 68887502 -93712428 + AluSq SINE Alu 1 288 -25 186 43 0 0 chrX 68887502 68887525 -93712405 + (GGA)n Simple_repeat Simple_repeat 3 25 0 3413 135 7 4 chrX 68887525 68888412 -93711518 + L1M1 LINE L1 24 1044 -6521 2718 98 43 19 chrX 68888412 68888830 -93711100 - MSTA LTR MaLR 0 428 1 257 128 0 21 chrX 68888830 68888877 -93711053 - MSTA-int LTR MaLR 0 1651 1606 * 1387 199 114 52 chrX 68888872 68889310 -93710620 + L1ME3A LINE L1 5672 6136 -34 724 209 39 61 chrX 68889337 68889567 -93710363 + L1ME2 LINE L1 5101 5325 -1057 290 45 23 0 chrX 68889568 68889612 -93710318 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 813 142 17 0 chrX 68889613 68889733 -93710197 - FLAM_C SINE Alu -20 123 2 350 204 65 9 chrX 68889733 68889841 -93710089 + L1ME2 LINE L1 5318 5431 -951 258 154 154 0 chrX 68889840 68889905 -93710025 - L1M4 LINE L1 -849 5297 5223 * 2203 92 3 0 chrX 68889975 68890270 -93709660 - AluSp SINE Alu -17 296 1 22 0 0 0 chrX 68890274 68890296 -93709634 + AT_rich Low_complexity Low_complexity 1 22 0 3186 165 140 39 chrX 68890300 68891138 -93708792 + L1ME2 LINE L1 5431 6359 -41 2282 101 0 0 chrX 68891138 68891446 -93708484 + AluSx SINE Alu 1 308 -4 3186 165 140 39 chrX 68891446 68891482 -93708448 + L1ME2 LINE L1 6359 6390 -10 186 71 0 0 chrX 68892322 68892350 -93707580 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2054 98 0 3 chrX 68892354 68892639 -93707291 - AluSx SINE Alu -28 284 1 243 289 171 0 chrX 68892982 68893058 -93706872 + MIR SINE MIR 35 123 -85 194 200 0 0 chrX 68893298 68893333 -93706597 + MIR3 SINE MIR 125 159 -49 204 255 20 0 chrX 68893810 68893861 -93706069 + MIR SINE MIR 211 262 0 * 343 216 117 49 chrX 68893829 68893991 -93705939 - MIR SINE MIR -27 235 63 10477 48 5 40 chrX 68894015 68895426 -93704504 - SVA Other Other -4 1382 21 263 214 36 0 chrX 68895822 68895878 -93704052 + L2 LINE L2 3256 3313 0 260 133 22 0 chrX 68895898 68895943 -93703987 - L2 LINE L2 -88 3225 3180 398 279 235 0 chrX 68895992 68896128 -93703802 + MIR SINE MIR 9 176 -86 504 246 41 33 chrX 68896193 68896315 -93703615 + MIR3 SINE MIR 85 207 -1 401 258 129 16 chrX 68896388 68896512 -93703418 - MIR SINE MIR -8 254 117 260 364 119 0 chrX 68896533 68896651 -93703279 - L2 LINE L2 0 3272 3141 255 273 0 0 chrX 68896760 68896815 -93703115 + L2 LINE L2 3255 3309 -4 180 380 124 7 chrX 68897431 68897568 -93702362 + L3b LINE CR1 1422 1574 -9 242 192 19 19 chrX 68897610 68897662 -93702268 - L3 LINE CR1 -2 1575 1524 387 318 11 17 chrX 68897977 68898153 -93701777 - MER5B DNA MER1_type -3 175 1 446 224 159 0 chrX 68898619 68898726 -93701204 + L2 LINE L2 3187 3310 -3 267 290 108 11 chrX 68898989 68899082 -93700848 + L2 LINE L2 3153 3254 -18 210 71 0 0 chrX 68899082 68899110 -93700820 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 206 327 139 42 chrX 68899118 68899283 -93700647 - L2 LINE L2 -497 2817 2637 1791 108 104 0 chrX 68899492 68899761 -93700169 - AluSx SINE Alu -12 300 4 2408 117 3 9 chrX 68899843 68900184 -93699746 - MER1B DNA MER1_type 0 339 1 402 289 48 0 chrX 68900325 68900429 -93699501 - MIR SINE MIR -68 140 32 676 324 13 9 chrX 68900533 68900758 -93699172 + MIR SINE MIR 22 247 -15 2174 67 14 0 chrX 68901278 68901563 -93698367 + AluSx SINE Alu 10 298 -14 266 280 95 47 chrX 68901676 68901830 -93698100 + MIR3 SINE MIR 10 160 -79 307 30 0 76 chrX 68902714 68902780 -93697150 + (CCCGG)n Simple_repeat Simple_repeat 3 63 0 314 326 0 0 chrX 68903412 68903510 -93696420 + G-rich Low_complexity Low_complexity 2 99 0 224 58 0 115 chrX 68903572 68903624 -93696306 + (CAG)n Simple_repeat Simple_repeat 3 48 0 245 328 0 17 chrX 68903769 68903822 -93696108 + (CCCGAA)n Simple_repeat Simple_repeat 1 53 -64 183 114 0 0 chrX 68903822 68903857 -93696073 + (CCCCAG)n Simple_repeat Simple_repeat 6 40 0 245 328 0 17 chrX 68903857 68903922 -93696008 + (CCCGAA)n Simple_repeat Simple_repeat 53 117 0 1338 200 56 0 chrX 68906914 68907075 -93692855 - AluJo SINE Alu -20 292 111 216 0 0 0 chrX 68907075 68907099 -93692831 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1338 200 56 0 chrX 68907099 68907187 -93692743 - AluJo SINE Alu -201 111 29 488 237 82 7 chrX 68908634 68908769 -93691161 + MIR3 SINE MIR 63 207 -1 285 98 0 0 chrX 68909849 68909890 -93690040 + (CA)n Simple_repeat Simple_repeat 1 41 0 435 135 292 0 chrX 68911135 68911231 -93688699 + AluJb SINE Alu 188 311 -1 1888 150 3 13 chrX 68911233 68911533 -93688397 + AluJb SINE Alu 1 297 -15 310 280 0 13 chrX 68911784 68911859 -93688071 + tRNA-Ile-ATT tRNA tRNA 2 75 -2 943 203 45 37 chrX 68912130 68912372 -93687558 - MIR SINE MIR 0 262 19 4704 120 11 29 chrX 68912626 68912789 -93687141 + L1PA16 LINE L1 5417 5581 -585 1858 167 7 0 chrX 68912789 68913089 -93686841 - AluJb SINE Alu -10 302 1 4704 120 11 29 chrX 68913089 68913686 -93686244 + L1PA16 LINE L1 5581 6163 -3 278 302 52 10 chrX 68913686 68913782 -93686148 + MIR SINE MIR 67 166 -96 255 226 54 86 chrX 68914649 68914742 -93685188 - MIR3 SINE MIR -21 187 98 1311 178 32 28 chrX 68915104 68915137 -93684793 - L1PA16 LINE L1 -9 6157 6126 2315 117 0 0 chrX 68915137 68915435 -93684495 + AluSx SINE Alu 1 298 -14 1311 178 32 28 chrX 68915435 68915654 -93684276 - L1PA16 LINE L1 -40 6126 5904 295 253 100 27 chrX 68915670 68915820 -93684110 - L1MC4a LINE L1 -1886 5922 5762 491 304 75 9 chrX 68915858 68916072 -93683858 + MIR SINE MIR 28 255 -7 2439 63 0 50 chrX 68916860 68917177 -93682753 - AluSg SINE Alu -9 301 1 493 205 0 0 chrX 68917459 68917542 -93682388 + FRAM SINE Alu 64 146 -30 405 102 0 0 chrX 68917543 68917602 -93682328 + (TA)n Simple_repeat Simple_repeat 1 59 0 539 252 7 33 chrX 68917838 68917989 -93681941 + MIR3 SINE MIR 10 156 -52 207 162 0 0 chrX 68918238 68918275 -93681655 + (TG)n Simple_repeat Simple_repeat 1 37 0 764 203 25 64 chrX 68918477 68918713 -93681217 + MIR SINE MIR 36 262 0 359 276 81 57 chrX 68920180 68920390 -93679540 + MIR SINE MIR 5 219 -43 251 88 0 0 chrX 68921160 68921194 -93678736 + (TC)n Simple_repeat Simple_repeat 2 35 0 775 135 21 0 chrX 68921206 68921347 -93678583 + CT-rich Low_complexity Low_complexity 3 146 0 1751 161 47 17 chrX 68921349 68921648 -93678282 - AluJb SINE Alu -4 308 1 677 233 0 0 chrX 68922224 68922353 -93677577 + MER94 DNA DNA 1 129 -5 211 104 42 0 chrX 68922434 68922482 -93677448 + (TG)n Simple_repeat Simple_repeat 2 51 0 189 0 0 0 chrX 68922570 68922591 -93677339 + (T)n Simple_repeat Simple_repeat 1 21 0 214 316 22 7 chrX 68922679 68922815 -93677115 + (TG)n Simple_repeat Simple_repeat 1 138 0 189 0 0 0 chrX 68922849 68922870 -93677060 + (TG)n Simple_repeat Simple_repeat 1 21 0 618 79 0 0 chrX 68923021 68923110 -93676820 - AluY SINE Alu -18 293 205 2292 85 0 3 chrX 68923111 68923405 -93676525 - AluSx SINE Alu -18 294 2 2448 85 3 0 chrX 68923994 68924301 -93675629 + AluSp SINE Alu 1 308 -5 527 260 86 29 chrX 68924593 68924724 -93675206 - MIR SINE MIR -6 256 108 2193 98 3 7 chrX 68924724 68925011 -93674919 + AluSg SINE Alu 3 288 -22 527 260 86 29 chrX 68925011 68925088 -93674842 - MIR SINE MIR -154 108 37 510 310 31 25 chrX 68925105 68925348 -93674582 - MIR SINE MIR -15 247 5 262 125 0 0 chrX 68925367 68925407 -93674523 + MIR3 SINE MIR 155 194 -14 305 273 0 94 chrX 68926521 68926649 -93673281 + MIR SINE MIR 25 140 -68 334 186 105 12 chrX 68927122 68927208 -93672722 - MIR SINE MIR -101 161 68 195 311 0 16 chrX 68927737 68927798 -93672132 + L2 LINE L2 3249 3308 -5 1778 147 44 4 chrX 68928396 68928713 -93671217 + AluJb SINE Alu 1 328 0 1963 137 0 36 chrX 68929438 68929744 -93670186 + AluJo SINE Alu 1 295 -17 1988 158 0 22 chrX 68929744 68930060 -93669870 + AluSx SINE Alu 1 309 -3 382 312 17 35 chrX 68930156 68930329 -93669601 + MER5A DNA MER1_type 19 188 -1 225 0 0 0 chrX 68930350 68930375 -93669555 + (T)n Simple_repeat Simple_repeat 1 25 0 420 264 39 16 chrX 68931209 68931338 -93668592 + MIR3 SINE MIR 25 156 -52 398 152 0 63 chrX 68932245 68932324 -93667606 + L2 LINE L2 3197 3270 -2 416 286 117 0 chrX 68932380 68932534 -93667396 + MIR3 SINE MIR 37 208 0 389 248 174 0 chrX 68934478 68934627 -93665303 - MER112 DNA MER1_type -7 253 79 283 252 24 16 chrX 68934633 68934756 -93665174 + (TA)n Simple_repeat Simple_repeat 1 124 0 553 299 62 62 chrX 68934779 68935100 -93664830 - L3 LINE CR1 -402 1175 852 2036 110 46 0 chrX 68935100 68935381 -93664549 - AluSx SINE Alu -17 295 2 553 299 62 62 chrX 68935381 68935463 -93664467 - L3 LINE CR1 -724 853 772 194 0 39 0 chrX 68935613 68935639 -93664291 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1355 163 0 0 chrX 68935639 68935841 -93664089 - 7SLRNA srpRNA srpRNA -22 298 97 293 246 66 0 chrX 68935843 68935904 -93664026 - FLAM_A SINE Alu -68 65 1 1032 77 7 0 chrX 68935913 68936056 -93663874 - L1MA4 LINE L1 -4 6296 6153 5280 22 13 0 chrX 68936177 68936780 -93663150 + L1PA4 LINE L1 5545 6155 0 797 251 39 30 chrX 68937062 68937293 -93662637 + MIR SINE MIR 30 262 0 184 264 38 0 chrX 68937349 68937402 -93662528 - MIR SINE MIR -109 153 99 204 40 0 0 chrX 68938570 68938595 -93661335 + (CAA)n Simple_repeat Simple_repeat 1 25 0 428 306 31 19 chrX 68938866 68939026 -93660904 - MIR3 SINE MIR -14 194 33 647 273 0 38 chrX 68939119 68939231 -93660699 + MER5B DNA MER1_type 3 107 -71 611 26 13 0 chrX 68939231 68939307 -93660623 - L1PA5 LINE L1 -5 6149 6073 647 273 0 38 chrX 68939307 68939377 -93660553 + MER5B DNA MER1_type 107 178 0 2251 145 25 20 chrX 68940227 68940402 -93659528 - L1MA9 LINE L1 -3 6309 6136 2406 75 3 0 chrX 68940402 68940694 -93659236 - AluSp SINE Alu -19 294 2 2251 145 25 20 chrX 68940694 68940926 -93659004 - L1MA9 LINE L1 -176 6136 5900 269 280 114 15 chrX 68941547 68941679 -93658251 + MIR SINE MIR 63 207 -55 893 298 98 41 chrX 68942166 68942605 -93657325 + LTR16B LTR ERVL 1 464 0 2486 70 0 3 chrX 68942699 68942998 -93656932 - AluY SINE Alu -13 298 1 249 250 100 12 chrX 68943230 68943310 -93656620 + MIR SINE MIR 30 116 -92 249 163 0 0 chrX 68943455 68943504 -93656426 + (TG)n Simple_repeat Simple_repeat 1 49 0 228 268 0 0 chrX 68943503 68943585 -93656345 + GA-rich Low_complexity Low_complexity 1 82 0 * 2286 108 0 0 chrX 68944368 68944664 -93655266 - AluSg SINE Alu -13 297 2 327 293 64 21 chrX 68944929 68945069 -93654861 + MIR3 SINE MIR 11 156 -52 1724 225 20 35 chrX 68945519 68945580 -93654350 - L1ME1 LINE L1 -6 6160 6100 2427 71 0 3 chrX 68945580 68945874 -93654056 - AluY SINE Alu -18 293 1 1724 225 20 35 chrX 68945874 68946300 -93653630 - L1ME1 LINE L1 -66 6100 5680 826 162 0 21 chrX 68946781 68946923 -93653007 + FLAM_C SINE Alu 1 139 -4 402 96 0 0 chrX 68946923 68946975 -93652955 + FLAM SINE Alu 64 115 -28 255 61 0 0 chrX 68946975 68947008 -93652922 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2111 139 18 21 chrX 68948397 68948735 -93651195 + MER2 DNA MER2_type 1 337 -8 356 328 8 0 chrX 68949238 68949363 -93650567 - MIR3 SINE MIR -23 185 60 188 348 105 11 chrX 68949935 68950116 -93649814 + L2 LINE L2 2838 3035 -237 2580 181 8 43 chrX 68950137 68950735 -93649195 - L1MB8 LINE L1 -6 6983 6407 5271 171 16 10 chrX 68950737 68951709 -93648221 - L1MA4 LINE L1 -6 6294 5317 6548 152 30 18 chrX 68951723 68952713 -93647217 - L1MC1 LINE L1 -19 6594 5573 2373 56 28 0 chrX 68952713 68952997 -93646933 + AluY SINE Alu 2 293 -18 6548 152 30 18 chrX 68952997 68953329 -93646601 - L1MC1 LINE L1 -1040 5573 5246 824 139 0 0 chrX 68953383 68953505 -93646425 - L1MC1 LINE L1 -6276 150 29 * 2324 215 33 26 chrX 68953502 68953680 -93646250 - L1MB8 LINE L1 -810 6147 5972 3335 113 21 51 chrX 68953680 68954246 -93645684 - L1MB3 LINE L1 -1 6182 5634 2324 215 33 26 chrX 68954246 68954708 -93645222 - L1MB8 LINE L1 -985 5972 5503 180 179 0 0 chrX 68955295 68955334 -93644596 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1964 202 15 8 chrX 68956062 68956532 -93643398 - L1MB8 LINE L1 -1441 5516 5044 * 43634 49 2 2 chrX 68956526 68962679 -93637251 - L1PA4 LINE L1 0 6155 1 4122 238 45 17 chrX 68962688 68963871 -93636059 - L1MB8 LINE L1 -1902 5055 3840 1140 192 16 8 chrX 68963871 68964116 -93635814 - L1MB7 LINE L1 -16 6168 5922 1627 268 36 30 chrX 68964117 68964739 -93635191 - L1MB8 LINE L1 -4764 2195 1567 1514 175 13 40 chrX 68964739 68965042 -93634888 - AluJb SINE Alu -7 305 11 1627 268 36 30 chrX 68965042 68965113 -93634817 - L1MB8 LINE L1 -5392 1567 1498 3240 278 56 32 chrX 68965131 68966144 -93633786 - L1MB8 LINE L1 -5592 1267 230 3069 131 16 10 chrX 68966146 68966741 -93633189 - MER4E LTR ERV1 0 766 1 2568 122 18 13 chrX 68966741 68966981 -93632949 - MER4E-int LTR ERV1 0 6758 6514 2361 87 3 0 chrX 68966981 68967280 -93632650 + AluSp SINE Alu 1 300 -13 2568 122 18 13 chrX 68967280 68967432 -93632498 - MER4E-int LTR ERV1 -244 6514 6364 189 94 0 0 chrX 68967432 68967464 -93632466 + (TA)n Simple_repeat Simple_repeat 2 33 0 1722 118 39 20 chrX 68967470 68967529 -93632401 - MER4E-int LTR ERV1 -458 6300 6244 5977 91 0 30 chrX 68967529 68968333 -93631597 - LTR17 LTR ERV1 0 780 1 1722 118 39 20 chrX 68968333 68968527 -93631403 - MER4E-int LTR ERV1 -514 6244 6042 4344 41 0 6 chrX 68968527 68969041 -93630889 + L1PA5 LINE L1 5392 5902 -252 1071 116 0 66 chrX 68969045 68969226 -93630704 - MER4B-int LTR ERV1 -2152 4606 4438 * 4195 138 36 5 chrX 68969210 68969847 -93630083 - MER4B-int LTR ERV1 -2670 4088 3432 8974 102 90 50 chrX 68969852 68972002 -93627928 - MER4B-int LTR ERV1 -3668 3090 1227 426 39 0 0 chrX 68972007 68972059 -93627871 + (CA)n Simple_repeat Simple_repeat 1 52 0 5411 123 24 17 chrX 68972059 68973145 -93626785 - MER4B-int LTR ERV1 -5609 1149 1 2999 149 53 37 chrX 68973176 68973741 -93626189 - MER4B LTR ERV1 -36 574 1 1022 230 42 0 chrX 68973741 68973954 -93625976 - L1MB8 LINE L1 -6631 228 7 334 320 67 20 chrX 68974332 68974482 -93625448 + L3 LINE CR1 1332 1488 -89 499 261 24 20 chrX 68976329 68976573 -93623357 - L1MC5 LINE L1 -48 7913 7606 206 262 99 57 chrX 68976771 68976912 -93623018 - MIR SINE MIR -102 160 14 449 262 51 47 chrX 68977569 68977738 -93622192 + MIR3 SINE MIR 32 206 -2 220 309 37 25 chrX 68977737 68977818 -93622112 - L3b LINE CR1 -131 1452 1371 * 375 23 0 0 chrX 68978300 68978344 -93621586 + (CA)n Simple_repeat Simple_repeat 2 45 0 1550 189 60 12 chrX 68978685 68979019 -93620911 - LTR1 LTR ERV1 -233 552 203 1316 159 12 28 chrX 68978989 68979263 -93620667 - LTR1 LTR ERV1 -527 258 46 * 3160 158 43 84 chrX 68980015 68980739 -93619191 + LTR8A LTR ERV1 34 727 0 788 203 130 139 chrX 68981098 68981489 -93618441 + MER31B LTR ERV1 1 389 -77 1977 166 0 0 chrX 68981489 68981797 -93618133 - AluSx SINE Alu 0 312 5 788 203 130 139 chrX 68981797 68981829 -93618101 + MER31B LTR ERV1 389 420 -46 2186 139 56 19 chrX 68981866 68982240 -93617690 - LTR51 LTR ERV1 0 671 284 1563 134 29 8 chrX 68982463 68982709 -93617221 - L1PB1 LINE L1 -8 6143 5893 201 390 12 0 chrX 68982790 68982872 -93617058 - MIR SINE MIR -62 146 64 331 329 70 61 chrX 68983023 68983050 -93616880 - MIR SINE MIR -30 232 207 610 90 13 0 chrX 68983050 68983128 -93616802 - MADE1 DNA Mariner 0 80 2 331 329 70 61 chrX 68983128 68983328 -93616602 - MIR SINE MIR -55 207 3 1133 44 7 0 chrX 68983885 68984021 -93615909 + L1PA5 LINE L1 6017 6153 -1 508 256 15 22 chrX 68984156 68984293 -93615637 + MIR3 SINE MIR 65 200 -8 301 276 9 70 chrX 68985681 68985807 -93614123 + MIR SINE MIR 31 142 -85 789 259 19 63 chrX 68985807 68986077 -93613853 + MIR SINE MIR 5 262 0 301 276 9 70 chrX 68986077 68986100 -93613830 + MIR SINE MIR 142 165 -62 511 229 19 98 chrX 68986632 68986765 -93613165 - MIR SINE MIR -65 197 84 1727 159 7 7 chrX 68986765 68987070 -93612860 + AluJb SINE Alu 9 312 0 511 229 19 98 chrX 68987070 68987141 -93612789 - MIR SINE MIR -178 84 9 187 248 266 35 chrX 68988288 68988401 -93611529 + MIR3 SINE MIR 2 140 -68 433 276 16 39 chrX 68988822 68988949 -93610981 + MIR SINE MIR 16 139 -69 1770 112 7 82 chrX 68988949 68989302 -93610628 - AluJo SINE Alu 0 330 1 384 250 19 0 chrX 68989327 68989431 -93610499 - L1ME3 LINE L1 0 6334 6067 * 2603 120 2 55 chrX 68989429 68989863 -93610067 + L1PB4 LINE L1 5503 5913 -243 2289 100 0 0 chrX 68989857 68990166 -93609764 - L1MA5 LINE L1 -461 5839 5531 * 4634 206 44 42 chrX 68990162 68990753 -93609177 - L1M4 LINE L1 -1391 4755 4167 1380 66 0 0 chrX 68990753 68990919 -93609011 - L1PA14 LINE L1 -4 6157 5992 4634 206 44 42 chrX 68990919 68991004 -93608926 - L1M4 LINE L1 -1979 4167 4084 1932 121 4 7 chrX 68991004 68991309 -93608621 - AluJb SINE Alu 0 305 2 4634 206 44 42 chrX 68991309 68991610 -93608320 - L1M4 LINE L1 -2062 4084 3770 2232 92 3 13 chrX 68991610 68991913 -93608017 - AluSx SINE Alu -12 300 1 4634 206 44 42 chrX 68991913 68992162 -93607768 - L1M4 LINE L1 -2376 3770 3523 1629 160 0 66 chrX 68992816 68993134 -93606796 + AluJo SINE Alu 1 297 -15 2309 64 0 0 chrX 68993216 68993529 -93606401 - AluY SINE Alu 0 313 1 245 341 38 23 chrX 68995894 68996026 -93603904 + L2 LINE L2 3139 3272 0 10613 189 67 46 chrX 68996086 68998092 -93601838 + L1MDa LINE L1 48 2120 -4420 1836 169 26 10 chrX 68998092 68998399 -93601531 - AluJb SINE Alu 0 312 1 10613 189 67 46 chrX 68998399 68998941 -93600989 + L1MDa LINE L1 2120 2649 -3891 1011 219 147 42 chrX 68998939 68999336 -93600594 + L1MD2 LINE L1 5851 6240 -2 * 3154 194 35 68 chrX 68999652 69000359 -93599571 - L1ME1 LINE L1 -5 6161 5499 2006 139 16 3 chrX 69000359 69000662 -93599268 + AluSx SINE Alu 2 308 -4 3154 194 35 68 chrX 69000662 69001179 -93598751 - L1ME1 LINE L1 -667 5499 4967 2269 95 0 0 chrX 69001227 69001523 -93598407 - AluY SINE Alu -15 296 1 1163 105 0 0 chrX 69001653 69001806 -93598124 + AluSq SINE Alu 3 155 -158 252 0 0 0 chrX 69001823 69001851 -93598079 + (A)n Simple_repeat Simple_repeat 1 28 0 356 272 126 92 chrX 69002059 69002265 -93597665 + MIR SINE MIR 50 262 0 359 320 32 8 chrX 69002305 69002430 -93597500 - MER5A DNA MER1_type -18 171 44 279 357 62 29 chrX 69002468 69002709 -93597221 - L2 LINE L2 -2954 360 112 198 300 0 43 chrX 69003782 69003852 -93596078 + L2 LINE L2 3206 3272 0 2331 92 0 13 chrX 69004145 69004459 -93595471 + AluSx SINE Alu 1 310 -2 331 309 0 81 chrX 69004533 69004669 -93595261 + L2 LINE L2 2677 2801 -513 191 295 114 19 chrX 69004677 69004782 -93595148 - L2 LINE L2 -1 3312 3198 190 358 18 55 chrX 69004935 69005100 -93594830 + L2 LINE L2 2893 3051 -221 2026 122 14 0 chrX 69005383 69005677 -93594253 + AluSx SINE Alu 1 298 -14 2451 76 0 3 chrX 69006065 69006367 -93593563 + AluSx SINE Alu 9 309 -3 648 264 104 68 chrX 69006407 69006490 -93593440 - L1ME4a LINE L1 -172 5949 5871 2329 96 0 0 chrX 69006490 69006791 -93593139 + AluSx SINE Alu 1 301 -11 648 264 104 68 chrX 69006791 69007079 -93592851 - L1ME4a LINE L1 -250 5871 5553 2323 100 0 0 chrX 69007079 69007378 -93592552 + AluSc SINE Alu 3 301 -8 648 264 104 68 chrX 69007378 69007493 -93592437 - L1ME4a LINE L1 -568 5553 5444 2339 81 3 16 chrX 69007521 69007828 -93592102 - AluSq SINE Alu -10 303 1 318 241 41 55 chrX 69007948 69008037 -93591893 - L1P LINE L1 -769 5396 5308 2232 98 6 22 chrX 69008037 69008352 -93591578 - AluSg SINE Alu 0 310 1 318 241 41 55 chrX 69008352 69008407 -93591523 - L1P LINE L1 -857 5308 5254 2141 105 11 0 chrX 69008676 69008962 -93590968 + AluSg SINE Alu 1 289 -21 573 55 0 0 chrX 69008962 69009035 -93590895 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 274 212 214 130 chrX 69009425 69009817 -93590113 - L2 LINE L2 -15 3298 2874 185 254 191 0 chrX 69009914 69009977 -93589953 + L2 LINE L2 2987 3061 -252 273 235 46 115 chrX 69010120 69010240 -93589690 + L2 LINE L2 3107 3207 -106 2424 81 3 0 chrX 69010240 69010548 -93589382 - AluSx SINE Alu -3 309 1 273 235 46 115 chrX 69010548 69010644 -93589286 + L2 LINE L2 3207 3308 -5 505 238 63 0 chrX 69013588 69013714 -93586216 + MER94 DNA DNA 1 134 0 415 241 146 35 chrX 69013719 69013918 -93586012 - MIR SINE MIR -4 258 38 2257 93 0 0 chrX 69014738 69015052 -93584878 - AluSg SINE Alu 0 314 1 282 29 0 0 chrX 69015196 69015231 -93584699 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2261 80 0 0 chrX 69015251 69015527 -93584403 - AluSx SINE Alu -36 276 1 524 200 46 23 chrX 69015878 69016008 -93583922 + MER94 DNA DNA 1 133 -1 2708 45 0 3 chrX 69016145 69016457 -93583473 - AluY SINE Alu 0 311 1 265 305 113 13 chrX 69017413 69017564 -93582366 - MIR3 SINE MIR -1 207 42 2262 110 3 0 chrX 69017935 69018235 -93581695 - AluSx SINE Alu -11 301 1 1473 184 24 31 chrX 69018521 69018809 -93581121 - AluJb SINE Alu -26 286 1 25 0 0 0 chrX 69019157 69019182 -93580748 + AT_rich Low_complexity Low_complexity 1 25 0 432 246 80 48 chrX 69019689 69019876 -93580054 + MIR SINE MIR 15 207 -55 21 36 0 0 chrX 69020844 69020872 -93579058 + AT_rich Low_complexity Low_complexity 1 28 0 843 160 97 16 chrX 69021225 69021418 -93578512 + Charlie5 DNA MER1_type 1 193 -2419 747 208 68 42 chrX 69021424 69021535 -93578395 + Charlie5 DNA MER1_type 2353 2460 -164 2223 82 3 24 chrX 69021535 69021828 -93578102 - AluSg SINE Alu -16 294 8 747 208 68 42 chrX 69021828 69021981 -93577949 + Charlie5 DNA MER1_type 2460 2624 0 626 321 157 29 chrX 69022569 69022926 -93577004 - L3 LINE CR1 -56 1521 1211 1935 122 35 17 chrX 69022926 69023213 -93576717 - AluSx SINE Alu -20 292 1 626 321 157 29 chrX 69023213 69023732 -93576198 - L3 LINE CR1 -366 1211 498 507 200 216 0 chrX 69023739 69023864 -93576066 + MER5A DNA MER1_type 9 160 -29 242 250 224 17 chrX 69023762 69023878 -93576052 - MER5A DNA MER1_type -23 166 27 * 333 153 419 16 chrX 69023968 69024092 -93575838 - MER5B DNA MER1_type -1 177 4 2029 119 0 42 chrX 69024623 69024934 -93574996 - AluSq SINE Alu -15 298 1 216 86 0 0 chrX 69025345 69025380 -93574550 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1875 184 55 6 chrX 69025863 69026211 -93573719 - MLT1A1 LTR MaLR 0 365 1 8240 183 85 76 chrX 69026465 69026860 -93573070 - Cheshire DNA MER1_type 0 2420 2030 2436 75 0 3 chrX 69026860 69027165 -93572765 - AluY SINE Alu -6 305 2 8240 183 85 76 chrX 69027165 69029116 -93570814 - Cheshire DNA MER1_type -390 2030 50 2142 108 3 7 chrX 69029116 69029412 -93570518 + AluSx SINE Alu 1 295 -17 8240 183 85 76 chrX 69029412 69029460 -93570470 - Cheshire DNA MER1_type -2370 50 4 213 306 126 27 chrX 69030464 69030575 -93569355 + MIR SINE MIR 33 154 -108 429 182 154 27 chrX 69030616 69030726 -93569204 - FLAM_A SINE Alu -9 124 1 2275 92 3 0 chrX 69030743 69031035 -93568895 - AluSx SINE Alu -7 305 13 567 211 64 41 chrX 69031703 69031884 -93568046 + MER20 DNA MER1_type 1 219 0 238 368 0 0 chrX 69033726 69033794 -93566136 + (CCCCAG)n Simple_repeat Simple_repeat 5 72 0 2135 122 0 3 chrX 69037161 69037476 -93562454 - AluSx SINE Alu 0 314 1 1457 87 0 15 chrX 69038268 69038464 -93561466 + AluY SINE Alu 115 307 -4 311 232 12 24 chrX 69038513 69038595 -93561335 - MIR SINE MIR -109 153 73 387 281 27 14 chrX 69038875 69039021 -93560909 + L3b LINE CR1 1107 1254 -329 411 287 30 24 chrX 69040101 69040268 -93559662 + MIR3 SINE MIR 33 200 -8 429 276 0 9 chrX 69042811 69042927 -93557003 + MIR SINE MIR 33 147 -115 431 293 38 25 chrX 69043873 69044030 -93555900 - MER103 DNA DNA -7 159 1 199 296 34 34 chrX 69045985 69046073 -93553857 - MIR3 SINE MIR -9 199 112 2330 98 0 31 chrX 69048801 69049119 -93550811 - AluSc SINE Alu 0 309 2 438 269 18 48 chrX 69053094 69053261 -93546669 - MIR3 SINE MIR -15 193 32 268 238 16 0 chrX 69053263 69053326 -93546604 - MIR3 SINE MIR -52 156 93 193 347 0 13 chrX 69054244 69054319 -93545611 - L2 LINE L2 -6 3266 3193 252 0 0 0 chrX 69056340 69056368 -93543562 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2399 84 0 16 chrX 69057260 69057570 -93542360 + AluSp SINE Alu 1 305 -8 2137 116 41 0 chrX 69058428 69058722 -93541208 + AluSx SINE Alu 1 306 -6 696 180 52 82 chrX 69061651 69061845 -93538085 + MLT1E2 LTR MaLR 1 188 -438 722 116 50 16 chrX 69061875 69061996 -93537934 + FLAM_C SINE Alu 5 129 -14 1609 190 50 62 chrX 69061999 69062157 -93537773 + MLT1E2 LTR MaLR 235 394 -232 2181 83 6 71 chrX 69062157 69062482 -93537448 - AluSp SINE Alu -9 304 1 1609 190 50 62 chrX 69062482 69062707 -93537223 + MLT1E2 LTR MaLR 394 613 -13 409 250 0 22 chrX 69062942 69063034 -93536896 + MER21B LTR ERV1 3 92 -771 2463 78 0 0 chrX 69063055 69063348 -93536582 + AluSc SINE Alu 1 293 -16 2145 209 75 124 chrX 69063350 69064098 -93535832 + MER21B LTR ERV1 24 724 -139 300 53 0 0 chrX 69064098 69064136 -93535794 + (GGATG)n Simple_repeat Simple_repeat 5 42 0 2145 209 75 124 chrX 69064136 69064259 -93535671 + MER21B LTR ERV1 724 852 -11 443 229 0 7 chrX 69064600 69064740 -93535190 + (CCCTAA)n Simple_repeat Simple_repeat 1 139 0 219 355 0 6 chrX 69064840 69065009 -93534921 + (ACTTG)n Simple_repeat Simple_repeat 5 172 0 204 320 13 13 chrX 69065607 69065757 -93534173 + (ACTTG)n Simple_repeat Simple_repeat 4 153 0 255 326 6 6 chrX 69065821 69065999 -93533931 + (ACTTG)n Simple_repeat Simple_repeat 2 179 0 1103 165 0 0 chrX 69066592 69066762 -93533168 - AluJ SINE Alu -10 302 133 257 0 30 0 chrX 69066762 69066795 -93533135 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1900 139 4 7 chrX 69066795 69067076 -93532854 - AluSg SINE Alu -30 280 1 256 98 24 0 chrX 69067094 69067135 -93532795 - MADE1 DNA Mariner 0 80 39 766 177 39 0 chrX 69067135 69067265 -93532665 - AluJ SINE Alu -176 136 2 273 183 0 0 chrX 69067291 69067351 -93532579 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 351 216 0 8 chrX 69067456 69067548 -93532382 + L1MC/D LINE L1 3668 3754 -2392 1084 204 0 0 chrX 69067558 69067734 -93532196 + MER8 DNA MER2_type 1 176 -63 2297 96 7 0 chrX 69067833 69068124 -93531806 + AluSp SINE Alu 1 293 -20 435 299 206 15 chrX 69068170 69068568 -93531362 + L1MC4 LINE L1 7373 7846 -196 274 253 24 0 chrX 69068604 69068687 -93531243 + L1MC4 LINE L1 7956 8040 -2 409 267 34 99 chrX 69068870 69069132 -93530798 - TAR1 Satellite telomeric -136 1975 1731 2092 89 4 7 chrX 69069295 69069575 -93530355 + AluSx SINE Alu 21 299 -13 1358 203 66 44 chrX 69069642 69070181 -93529749 + L1MC/D LINE L1 4898 5448 -872 2194 106 0 3 chrX 69070181 69070474 -93529456 + AluSq SINE Alu 2 293 -20 1358 203 66 44 chrX 69070474 69070607 -93529323 + L1MC/D LINE L1 5448 5577 -743 2606 127 52 15 chrX 69070607 69071044 -93528886 + MER34C LTR ERV1 2 455 -130 2217 98 0 7 chrX 69071044 69071234 -93528696 - AluSx SINE Alu 0 323 134 2174 82 3 60 chrX 69071234 69071570 -93528360 - AluSp SINE Alu 0 313 1 2217 98 0 7 chrX 69071570 69071704 -93528226 - AluSx SINE Alu -189 134 1 1452 109 14 0 chrX 69071720 69071931 -93527999 - MER31A LTR ERV1 -9 476 263 2426 94 0 0 chrX 69071946 69072255 -93527675 + AluSg SINE Alu 2 310 0 1706 168 14 14 chrX 69072347 69072644 -93527286 + AluJo SINE Alu 1 297 -15 758 221 20 0 chrX 69072870 69073019 -93526911 + LTR51 LTR ERV1 236 387 -284 2578 201 48 70 chrX 69073023 69073755 -93526175 - MER50 LTR ERV1 -9 725 10 672 244 85 6 chrX 69073761 69073991 -93525939 + LTR51 LTR ERV1 380 838 -85 2388 91 13 0 chrX 69074644 69074953 -93524977 - AluSp SINE Alu 0 313 1 1784 59 32 16 chrX 69074989 69075242 -93524688 + L1MA1 LINE L1 6046 6302 0 2225 231 2 59 chrX 69076085 69076607 -93523323 + L1MD1 LINE L1 16 506 -6034 4421 121 7 57 chrX 69076607 69077332 -93522598 + LTR8 LTR ERV1 1 689 -2 2225 231 2 59 chrX 69077332 69077367 -93522563 + L1MD1 LINE L1 506 541 -5999 3482 155 47 38 chrX 69077368 69078076 -93521854 + LTR8A LTR ERV1 14 727 0 1111 233 9 0 chrX 69078076 69078291 -93521639 + HUERS-P1 LTR ERV1 1 217 -6046 9212 162 36 17 chrX 69078313 69079883 -93520047 + L1MA2 LINE L1 587 2186 -5379 * 16564 154 17 14 chrX 69079865 69080180 -93519750 + L1MA2 LINE L1 3371 3683 -4040 2506 87 3 0 chrX 69080180 69080489 -93519441 + AluSp SINE Alu 1 310 -3 16564 154 17 14 chrX 69080489 69084504 -93515426 + L1MA2 LINE L1 3683 7723 0 5110 201 95 75 chrX 69084584 69085702 -93514228 + L1MD1 LINE L1 3939 5033 -1507 841 182 0 0 chrX 69085702 69085834 -93514096 - FLAM_A SINE Alu -1 132 1 5110 201 95 75 chrX 69085834 69086314 -93513616 + L1MD1 LINE L1 5033 5590 -950 6963 51 10 82 chrX 69086314 69088150 -93511780 - SVA Other Other -645 1386 3 5110 201 95 75 chrX 69088150 69088358 -93511572 + L1MD1 LINE L1 5590 5792 -748 719 142 0 35 chrX 69088358 69088605 -93511325 + AluJb SINE Alu 1 311 -1 3106 187 41 87 chrX 69088635 69089510 -93510420 + L1MD1 LINE L1 5779 6613 -23 2091 80 69 7 chrX 69089515 69089791 -93510139 + AluSg SINE Alu 7 299 -11 27 49 0 0 chrX 69089791 69089832 -93510098 + AT_rich Low_complexity Low_complexity 1 41 0 286 316 20 0 chrX 69089851 69089949 -93509981 - MIR3 SINE MIR -51 157 58 2084 106 55 0 chrX 69090206 69090499 -93509431 - AluSx SINE Alu -3 309 1 2333 97 0 0 chrX 69090510 69090828 -93509102 - AluSx SINE Alu 0 312 1 1905 138 38 0 chrX 69090860 69091151 -93508779 - AluSx SINE Alu -10 302 1 208 387 59 0 chrX 69091340 69091459 -93508471 - L2 LINE L2 -969 2345 2220 1920 133 10 24 chrX 69091847 69092141 -93507789 + AluJo SINE Alu 1 290 -22 2563 60 3 3 chrX 69092243 69092545 -93507385 - AluSp SINE Alu -11 302 1 1694 160 17 31 chrX 69093101 69093395 -93506535 - AluJo SINE Alu -15 297 8 313 339 68 17 chrX 69093587 69093764 -93506166 - MIR SINE MIR -65 197 12 733 158 0 0 chrX 69094919 69095033 -93504897 + FLAM_C SINE Alu 2 115 -28 240 322 42 0 chrX 69095333 69095451 -93504479 + L2 LINE L2 2708 2830 -484 389 249 158 72 chrX 69095533 69095718 -93504212 + L2 LINE L2 2991 3207 -106 2459 71 0 0 chrX 69095718 69096041 -93503889 + AluY SINE Alu 2 311 0 389 249 158 72 chrX 69096041 69096120 -93503810 + L2 LINE L2 3207 3278 -35 690 211 0 0 chrX 69096130 69096258 -93503672 - FLAM_C SINE Alu -15 128 1 2275 110 7 0 chrX 69096796 69097104 -93502826 + AluSx SINE Alu 1 310 -2 824 149 8 22 chrX 69097832 69097966 -93501964 - FLAM_C SINE Alu -11 132 1 180 0 0 0 chrX 69098116 69098136 -93501794 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2067 119 0 42 chrX 69098632 69098942 -93500988 - AluSx SINE Alu -15 297 1 1998 143 7 0 chrX 69098971 69099258 -93500672 + AluSx SINE Alu 1 289 -23 1484 133 97 20 chrX 69099461 69099761 -93500169 + MER33 DNA MER1_type 1 323 -1 1110 137 0 0 chrX 69100111 69100272 -93499658 - AluSg/x SINE Alu -9 301 141 351 230 0 0 chrX 69100440 69100527 -93499403 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 2376 80 0 0 chrX 69100527 69100815 -93499115 - AluSc SINE Alu -20 289 2 2322 92 3 0 chrX 69102055 69102359 -93497571 + AluSg SINE Alu 1 305 -5 441 221 138 14 chrX 69102541 69102686 -93497244 + MIR SINE MIR 66 228 -34 1095 166 0 0 chrX 69102877 69103040 -93496890 - AluJb SINE Alu -23 289 127 22 0 0 0 chrX 69104750 69104772 -93495158 + AT_rich Low_complexity Low_complexity 1 22 0 1961 158 26 0 chrX 69105101 69105404 -93494526 + AluJb SINE Alu 1 311 -1 499 163 31 53 chrX 69156915 69157065 -93442865 + L1ME2 LINE L1 5680 5827 -335 943 217 78 36 chrX 69157065 69157374 -93442556 - L1MC4a LINE L1 -413 7395 7074 298 216 25 1 chrX 69157387 69157467 -93442463 - L1MC4 LINE L1 -777 7184 7102 927 231 83 111 chrX 69157529 69157578 -93442352 - L1MC4 LINE L1 -1883 5925 5876 1343 126 35 31 chrX 69157578 69157839 -93442091 + L1MA9 LINE L1 6050 6311 -1 927 231 83 111 chrX 69157839 69158418 -93441512 - L1MC4 LINE L1 -1932 5876 5315 10186 27 0 0 chrX 69158428 69160403 -93439527 - L1PA4 LINE L1 -3 6152 4178 1462 118 37 0 chrX 69160574 69160819 -93439111 - L1MA7 LINE L1 -12 6279 6026 1855 125 67 6 chrX 69160820 69161132 -93438798 + L1MA7 LINE L1 5610 5940 -351 1634 178 21 28 chrX 69161147 69161434 -93438496 + AluJo SINE Alu 3 287 -25 452 222 53 64 chrX 69161509 69161680 -93438250 - L1ME3A LINE L1 -4 6166 5998 1782 98 4 0 chrX 69161759 69162015 -93437915 - L1PA13 LINE L1 -385 5783 5527 2727 70 0 3 chrX 69162015 69162372 -93437558 + L1PA13 LINE L1 5796 6152 -11 397 271 148 7 chrX 69162408 69162563 -93437367 - L1 LINE L1 -1185 4961 4785 621 274 47 42 chrX 69162573 69162785 -93437145 - L2 LINE L2 -573 2741 2529 296 282 43 54 chrX 69162800 69163077 -93436853 - L1 LINE L1 -1365 4781 4508 23 68 0 0 chrX 69163177 69163221 -93436709 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chrX 69163283 69163327 -93436603 + AT_rich Low_complexity Low_complexity 1 44 0 2009 144 25 0 chrX 69163533 69163818 -93436112 + AluSx SINE Alu 1 292 -20 380 273 14 29 chrX 69163821 69164011 -93435919 - L1ME3A LINE L1 -305 5865 5678 646 229 18 55 chrX 69164062 69164138 -93435792 - L2 LINE L2 0 3313 3236 1314 172 30 109 chrX 69164138 69164534 -93435396 - MLT1A1 LTR MaLR 0 365 1 646 229 18 55 chrX 69164534 69164675 -93435255 - L2 LINE L2 -77 3236 3104 2250 100 3 3 chrX 69164702 69165002 -93434928 - AluSp SINE Alu -13 300 1 2061 136 6 6 chrX 69165002 69165347 -93434583 + MLT2C1 LTR ERVL 2 346 -51 202 102 102 0 chrX 69165359 69165408 -93434522 + A-rich Low_complexity Low_complexity 2 55 0 233 171 0 0 chrX 69165453 69165494 -93434436 + MLT2C1 LTR ERVL 357 397 0 524 273 14 0 chrX 69165496 69165639 -93434291 + HERVL-C1 LTR ERVL 3 147 -5507 * 18018 169 18 33 chrX 69165634 69166134 -93433796 + ERVL-C2 LTR ERVL 1947 2453 -3311 703 151 0 0 chrX 69166134 69166240 -93433690 + U6 snRNA snRNA 2 107 0 736 116 0 31 chrX 69166241 69166370 -93433560 + L1MA6 LINE L1 6166 6290 -10 18018 169 18 33 chrX 69166370 69169138 -93430792 + ERVL-C2 LTR ERVL 2453 5163 -601 715 205 0 8 chrX 69169138 69169260 -93430670 + FLAM_A SINE Alu 1 121 -12 18018 169 18 33 chrX 69169260 69169490 -93430440 + ERVL-C2 LTR ERVL 5163 5395 -369 1972 89 63 4 chrX 69169509 69169779 -93430151 - AluSp SINE Alu -27 286 1 1095 183 154 29 chrX 69169844 69170155 -93429775 + ERVL-C2 LTR ERVL 5406 5755 -9 1636 212 46 46 chrX 69170156 69170185 -93429745 + MLT2C2 LTR ERVL 1 28 -492 2222 123 3 0 chrX 69170185 69170493 -93429437 + AluSx SINE Alu 1 309 -3 1636 212 46 46 chrX 69170493 69170895 -93429035 + MLT2C2 LTR ERVL 28 483 -37 288 163 228 16 chrX 69171077 69171089 -93428841 - L1M4 LINE L1 -2912 3234 3226 318 20 41 0 chrX 69171089 69171138 -93428792 - L1MD1 LINE L1 0 6242 6192 288 163 228 16 chrX 69171138 69171248 -93428682 - L1M4 LINE L1 -2920 3226 3086 6274 143 16 10 chrX 69171368 69173374 -93426556 - L1MA2 LINE L1 -4 7719 5696 210 37 0 0 chrX 69173374 69173401 -93426529 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 41743 45 0 1 chrX 69173418 69179572 -93420358 - L1PA4 LINE L1 -8 6147 1 7578 202 23 14 chrX 69179572 69180157 -93419773 - L1MA2 LINE L1 -1858 5707 5129 1852 199 3 0 chrX 69180157 69180468 -93419462 - AluSx SINE Alu 0 312 1 7578 202 23 14 chrX 69180468 69181728 -93418202 - L1MA2 LINE L1 -2436 5129 3845 439 73 0 0 chrX 69181726 69181794 -93418136 + L1M1 LINE L1 2265 2332 -5233 * 37756 75 6 6 chrX 69181795 69187951 -93411979 + L1PA6 LINE L1 4 6154 0 309 70 0 0 chrX 69187945 69187988 -93411942 + L1M1 LINE L1 2318 2360 -5205 * 495 183 9 0 chrX 69188020 69188133 -93411797 + L1M1 LINE L1 2337 2797 -4699 19500 162 31 4 chrX 69188139 69189016 -93410914 - L1MA2 LINE L1 -3719 3846 2994 207 0 0 0 chrX 69189016 69189039 -93410891 + (TG)n Simple_repeat Simple_repeat 2 24 0 19500 162 31 4 chrX 69189039 69191893 -93408037 - L1MA2 LINE L1 -4571 2994 14 2211 247 50 32 chrX 69191889 69193062 -93406868 - L1MDb LINE L1 -3104 3436 2242 * 2092 188 63 20 chrX 69193127 69193574 -93406356 + MLT1C LTR MaLR 2 467 0 306 256 1 0 chrX 69193602 69193691 -93406239 - L1MDb LINE L1 -4977 1563 1474 340 244 39 72 chrX 69193692 69193872 -93406058 - L2 LINE L2 -1935 1379 1206 183 80 0 0 chrX 69193925 69193950 -93405980 + (TG)n Simple_repeat Simple_repeat 2 26 0 820 246 49 10 chrX 69194331 69194534 -93405396 + MIR SINE MIR 15 225 -37 201 39 0 0 chrX 69194581 69194607 -93405323 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 2179 106 3 0 chrX 69194614 69194898 -93405032 - AluSg SINE Alu -25 285 1 425 271 133 13 chrX 69195502 69195653 -93404277 + MLT1I LTR MaLR 2 170 -239 601 136 0 0 chrX 69195660 69195748 -93404182 - FRAM SINE Alu -21 155 68 365 289 59 13 chrX 69195788 69195940 -93403990 + MLT1I LTR MaLR 244 402 -7 198 324 99 0 chrX 69196098 69196169 -93403761 + MIR3 SINE MIR 2 79 -129 872 166 22 0 chrX 69196558 69196739 -93403191 + L1MA8 LINE L1 6106 6290 -1 831 240 18 0 chrX 69196833 69197004 -93402926 + AluJo SINE Alu 116 289 -23 495 218 109 0 chrX 69197013 69197169 -93402761 + L1MB7 LINE L1 69 241 -6618 839 280 69 21 chrX 69197312 69197701 -93402229 + L1MB7 LINE L1 776 1183 -5672 1645 179 11 42 chrX 69197800 69198153 -93401777 - MLT1A1 LTR MaLR -23 342 1 1046 166 9 169 chrX 69198190 69198578 -93401352 + L1MB7 LINE L1 1188 1525 -5334 415 132 13 0 chrX 69198578 69198654 -93401276 + AluSc SINE Alu 233 309 0 1046 166 9 169 chrX 69198654 69198789 -93401141 + L1MB7 LINE L1 1525 1680 -5179 * 35663 38 5 0 chrX 69198787 69204164 -93395766 + L1PA3 LINE L1 747 6150 -5 4272 251 54 26 chrX 69204146 69204328 -93395602 + L1MB7 LINE L1 1637 1812 -5145 * 2040 205 48 70 chrX 69204328 69204895 -93395035 + MLT2B3 LTR ERVL 1 554 0 4272 251 54 26 chrX 69204895 69205563 -93394367 + L1MB7 LINE L1 1812 2460 -4497 1645 164 0 82 chrX 69205563 69205880 -93394050 + AluSq SINE Alu 3 293 -20 4272 251 54 26 chrX 69205880 69206486 -93393444 + L1MB7 LINE L1 2460 3048 -3909 1962 150 7 0 chrX 69206486 69206773 -93393157 - AluSx SINE Alu -22 290 2 4272 251 54 26 chrX 69206773 69207929 -93392001 + L1MB7 LINE L1 3048 4408 -2549 1729 177 3 3 chrX 69207937 69208287 -93391643 - L1 LINE L1 -3600 2546 2197 391 222 10 0 chrX 69208290 69208389 -93391541 + L1MA4 LINE L1 5061 5160 -986 289 44 133 0 chrX 69208392 69208437 -93391493 + MADE1 DNA Mariner 2 52 -28 1584 146 7 0 chrX 69208437 69208725 -93391205 + L1MA4 LINE L1 5284 5573 -727 3102 189 74 8 chrX 69208733 69208746 -93391184 + L1MB7 LINE L1 5998 6009 -986 3976 114 11 9 chrX 69208746 69209394 -93390536 + L1MA4 LINE L1 5652 6300 0 3102 189 74 8 chrX 69209394 69210182 -93389748 + L1MB7 LINE L1 6009 6850 -145 * 6362 132 27 25 chrX 69210177 69212348 -93387582 - L1PA13 LINE L1 -3 6160 4000 503 206 7 15 chrX 69212358 69212494 -93387436 + L1MB8 LINE L1 6029 6163 -15 584 182 0 0 chrX 69212698 69212797 -93387133 + AluJb SINE Alu 203 301 -11 2209 108 44 0 chrX 69212797 69213094 -93386836 + AluSx SINE Alu 1 310 -2 286 240 128 97 chrX 69214124 69214320 -93385610 + L2 LINE L2 2828 3029 -243 2435 64 0 0 chrX 69214424 69214722 -93385208 - AluY SINE Alu -13 298 1 245 355 0 0 chrX 69214755 69214831 -93385099 + L2 LINE L2 3197 3272 0 2061 142 0 13 chrX 69214920 69215237 -93384693 - AluSq SINE Alu 0 313 1 651 296 124 13 chrX 69215271 69215497 -93384433 - MIR SINE MIR -1 261 11 583 205 32 16 chrX 69215485 69215638 -93384292 - MIR3 SINE MIR -38 170 15 * 2365 64 0 0 chrX 69216077 69216408 -93383522 + AluY SINE Alu 1 331 0 212 352 56 0 chrX 69216408 69216479 -93383451 - MIR SINE MIR -158 104 30 264 250 36 48 chrX 69216677 69216761 -93383169 + L2 LINE L2 3155 3237 -35 25 0 0 0 chrX 69216780 69216805 -93383125 + AT_rich Low_complexity Low_complexity 1 25 0 432 270 159 6 chrX 69216919 69217082 -93382848 + MIR SINE MIR 74 261 -1 1150 167 9 47 chrX 69218001 69218216 -93381714 + AluJb SINE Alu 85 291 -21 227 310 310 14 chrX 69218258 69218613 -93381317 - L2 LINE L2 -681 2633 2174 598 203 175 14 chrX 69219127 69219270 -93380660 - MER5A DNA MER1_type 0 189 24 689 157 193 0 chrX 69219401 69219567 -93380363 + MER5C DNA MER1_type 127 324 0 22 0 0 30 chrX 69222113 69222127 -93377803 + AT_rich Low_complexity Low_complexity 1 14 -18 886 121 14 0 chrX 69222127 69222267 -93377663 + L1PB4 LINE L1 6015 6156 0 22 0 0 30 chrX 69222267 69222285 -93377645 + AT_rich Low_complexity Low_complexity 14 32 0 221 57 29 0 chrX 69223327 69223362 -93376568 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 188 210 0 16 chrX 69223945 69224007 -93375923 + (TAA)n Simple_repeat Simple_repeat 1 61 0 307 258 118 0 chrX 69224920 69225013 -93374917 - L1MC4 LINE L1 -1339 6703 6600 605 33 43 0 chrX 69230978 69231070 -93368860 + (TC)n Simple_repeat Simple_repeat 1 96 0 2140 109 20 3 chrX 69231070 69231363 -93368567 - AluSx SINE Alu -14 298 1 235 333 30 0 chrX 69232793 69232859 -93367071 + MIR3 SINE MIR 103 170 -38 1686 143 99 4 chrX 69233723 69233995 -93365935 - AluSx SINE Alu -14 298 1 294 256 29 172 chrX 69235093 69235401 -93364529 - L2 LINE L2 -68 3204 2941 181 205 26 0 chrX 69235641 69235680 -93364250 + L2 LINE L2 2938 2977 -337 203 222 0 48 chrX 69235682 69235745 -93364185 + CT-rich Low_complexity Low_complexity 1 60 0 191 275 14 58 chrX 69235911 69235980 -93363950 + L2 LINE L2 3246 3311 -2 2100 129 0 7 chrX 69237026 69237320 -93362610 + AluJb SINE Alu 1 292 -20 414 336 0 8 chrX 69237394 69237519 -93362411 + MIR3 SINE MIR 77 200 -8 844 107 168 0 chrX 69237525 69237704 -93362226 - AluSg/x SINE Alu 0 340 140 1025 97 8 17 chrX 69237704 69237942 -93361988 + (TTCC)n Simple_repeat Simple_repeat 1 236 0 1365 140 144 12 chrX 69237944 69238187 -93361743 - AluSg1 SINE Alu -34 275 1 434 290 15 15 chrX 69239328 69239459 -93360471 - MIR3 SINE MIR -9 199 69 312 27 0 0 chrX 69239783 69239820 -93360110 + (CA)n Simple_repeat Simple_repeat 2 38 0 2400 92 0 0 chrX 69240039 69240342 -93359588 - AluSx SINE Alu -9 303 1 2427 97 0 0 chrX 69240346 69240687 -93359243 - AluSg SINE Alu 0 341 1 215 355 136 18 chrX 69241337 69241447 -93358483 - L2 LINE L2 -17 3255 3133 180 0 0 0 chrX 69241649 69241669 -93358261 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1716 88 44 0 chrX 69241973 69242199 -93357731 - AluSg SINE Alu -20 290 55 1121 58 7 0 chrX 69242202 69242341 -93357589 - AluSg SINE Alu -170 140 1 944 183 52 0 chrX 69243184 69243375 -93356555 - MER3 DNA MER1_type -8 201 1 17890 189 16 9 chrX 69244498 69246922 -93353008 - L1PA13 LINE L1 -11 7590 5185 1975 124 3 11 chrX 69246922 69247250 -93352680 - AluSx SINE Alu 0 326 1 17890 189 16 9 chrX 69247250 69248033 -93351897 - L1PA13 LINE L1 -2416 5185 4409 213 39 0 0 chrX 69248033 69248059 -93351871 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 15597 40 1 1 chrX 69248059 69250733 -93349197 - L1PA5 LINE L1 -13 6141 3468 17890 189 16 9 chrX 69250733 69251824 -93348106 - L1PA13 LINE L1 -3192 4409 3252 2046 137 0 48 chrX 69251824 69252139 -93347791 + AluSx SINE Alu 1 300 -12 17890 189 16 9 chrX 69252139 69252927 -93347003 - L1PA13 LINE L1 -4349 3252 2471 3809 192 91 10 chrX 69252985 69254515 -93345415 - L1PA13 LINE L1 -5871 1710 1 526 284 132 54 chrX 69254531 69254827 -93345103 + L3 LINE CR1 1220 1538 -39 189 0 0 0 chrX 69255295 69255316 -93344614 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 210 119 24 24 chrX 69257606 69257648 -93342282 + (TAA)n Simple_repeat Simple_repeat 3 44 0 476 253 71 80 chrX 69257731 69257902 -93342028 + MIR SINE MIR 39 209 -53 204 40 0 0 chrX 69257902 69257927 -93342003 + (TG)n Simple_repeat Simple_repeat 2 26 0 476 253 71 80 chrX 69257927 69257980 -93341950 + MIR SINE MIR 209 261 -1 543 303 31 6 chrX 69259331 69259493 -93340437 - MIR SINE MIR -48 214 49 2438 93 0 3 chrX 69259706 69260017 -93339913 + AluSx SINE Alu 1 310 -2 184 196 71 18 chrX 69260317 69260373 -93339557 - MIR SINE MIR -97 165 107 2581 64 0 3 chrX 69262524 69262838 -93337092 + AluSq SINE Alu 1 313 0 526 262 83 30 chrX 69263154 69263322 -93336608 - MIR SINE MIR -7 255 79 1404 107 0 0 chrX 69263390 69263606 -93336324 - L1MA4 LINE L1 -11 6289 6074 384 257 95 20 chrX 69263780 69263978 -93335952 + MER101B LTR ERV1 1 122 -448 1471 188 20 10 chrX 69264073 69264365 -93335565 + LTR51 LTR ERV1 222 516 -155 220 214 0 54 chrX 69264458 69264514 -93335416 + CT-rich Low_complexity Low_complexity 1 53 0 303 129 113 0 chrX 69264514 69264576 -93335354 - AluJ/FRAM SINE Alu -2 300 232 442 273 14 35 chrX 69264582 69264725 -93335205 - MIR SINE MIR -44 218 79 1483 113 113 0 chrX 69264795 69265007 -93334923 - AluSx SINE Alu -76 236 1 186 379 38 8 chrX 69265855 69265987 -93333943 + L2 LINE L2 3167 3302 -11 1781 130 33 33 chrX 69266456 69266757 -93333173 - AluJo SINE Alu -11 301 1 425 314 57 13 chrX 69266793 69266952 -93332978 - MIR SINE MIR -50 212 47 218 268 24 8 chrX 69267473 69267546 -93332384 + GA-rich Low_complexity Low_complexity 2 129 0 192 40 0 0 chrX 69268030 69268055 -93331875 + (ACTG)n Simple_repeat Simple_repeat 4 28 0 25 51 0 0 chrX 69269135 69269174 -93330756 + AT_rich Low_complexity Low_complexity 1 39 0 214 193 35 18 chrX 69270664 69270721 -93329209 + (TA)n Simple_repeat Simple_repeat 1 58 0 1432 236 52 68 chrX 69270738 69271309 -93328621 + MER68 LTR ERV1 1 562 0 222 273 109 19 chrX 69271312 69271429 -93328501 - MIR SINE MIR -80 182 16 186 261 43 0 chrX 69271466 69271512 -93328418 + MIR3 SINE MIR 142 189 -19 198 0 0 0 chrX 69272897 69272919 -93327011 + (CA)n Simple_repeat Simple_repeat 2 23 0 2355 70 0 70 chrX 69273059 69273387 -93326543 + AluY SINE Alu 1 305 -6 261 235 165 35 chrX 69273521 69273606 -93326324 + MIR3 SINE MIR 113 208 0 264 205 24 72 chrX 69274508 69274591 -93325339 - MIR SINE MIR -75 187 109 243 0 0 0 chrX 69275033 69275060 -93324870 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 40863 33 22 1 chrX 69275063 69281081 -93318849 - L1PA2 LINE L1 -7 6148 3 7972 206 38 31 chrX 69281225 69282194 -93317736 + L1MC3 LINE L1 5606 6567 -1218 1000 42 0 58 chrX 69282194 69282385 -93317545 + (TA)n Simple_repeat Simple_repeat 1 180 0 7972 206 38 31 chrX 69282385 69283571 -93316359 + L1MC3 LINE L1 6567 7775 -10 414 287 17 17 chrX 69283687 69283802 -93316128 + MIR3 SINE MIR 71 185 -23 563 116 0 0 chrX 69284210 69284296 -93315634 + L1PA11 LINE L1 6009 6094 -80 358 270 17 46 chrX 69284887 69285061 -93314869 + GA-rich Low_complexity Low_complexity 2 170 0 882 145 0 0 chrX 69285114 69285245 -93314685 - FLAM_C SINE Alu -2 131 1 1021 148 0 0 chrX 69285717 69285872 -93314058 - AluJb SINE Alu -18 294 140 1223 201 94 30 chrX 69285876 69286249 -93313681 + L1M4 LINE L1 2390 2786 -3360 369 172 69 60 chrX 69286249 69286365 -93313565 + MIR3 SINE MIR 71 187 -21 734 216 64 20 chrX 69286514 69286718 -93313212 - L1ME1 LINE L1 -21 6145 5933 34 24 0 0 chrX 69286747 69286788 -93313142 + AT_rich Low_complexity Low_complexity 1 41 0 3639 132 18 3 chrX 69286882 69287498 -93312432 - L1MC2 LINE L1 -165 6179 5555 14532 128 30 18 chrX 69287522 69289362 -93310568 + L1M1 LINE L1 820 2702 -4863 1923 75 55 0 chrX 69289362 69289469 -93310461 + AluY SINE Alu 14 114 -201 210 91 0 0 chrX 69289469 69289502 -93310428 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1923 75 55 0 chrX 69289502 69289682 -93310248 + AluY SINE Alu 114 315 0 14532 128 30 18 chrX 69289682 69290358 -93309572 + L1M1 LINE L1 2702 3368 -4197 5375 186 40 8 chrX 69290357 69291421 -93308509 - L1M1 LINE L1 -6457 1108 12 * 2529 179 60 28 chrX 69291416 69292069 -93307861 - L1P LINE L1 -813 5333 4660 * 959 235 4 4 chrX 69292065 69292316 -93307614 - L1MC2 LINE L1 -816 5330 5080 * 1310 108 5 10 chrX 69292316 69292519 -93307411 + L1PA16 LINE L1 5964 6165 -1 668 195 103 5 chrX 69292522 69292707 -93307223 + L1MC3 LINE L1 7583 7785 0 2880 269 180 10 chrX 69292708 69293397 -93306533 - L1MC2 LINE L1 -1054 5092 4521 752 197 99 13 chrX 69293397 69293549 -93306381 - AluJo/FRAM SINE Alu -1 301 137 2208 112 0 0 chrX 69293550 69293837 -93306093 - AluSx SINE Alu -19 293 7 2880 269 180 10 chrX 69293837 69294202 -93305728 - L1MC2 LINE L1 -1625 4521 4219 2121 122 0 14 chrX 69294202 69294497 -93305433 + AluSx SINE Alu 1 291 -21 2880 269 180 10 chrX 69294497 69294823 -93305107 - L1MC2 LINE L1 -1927 4219 3474 1189 166 122 58 chrX 69294956 69295299 -93304631 + MLT1A1 LTR MaLR 1 365 0 188 237 0 0 chrX 69295694 69295739 -93304191 - MIR SINE MIR -49 159 114 22 35 0 0 chrX 69296299 69296328 -93303602 + AT_rich Low_complexity Low_complexity 1 29 0 359 349 91 6 chrX 69296570 69296589 -93303341 + MIR SINE MIR 18 34 -228 758 142 0 57 chrX 69296589 69296730 -93303200 + FLAM_C SINE Alu 1 133 0 359 349 91 6 chrX 69296730 69296885 -93303045 + MIR SINE MIR 34 207 -55 444 287 69 69 chrX 69297011 69297227 -93302703 - MIR SINE MIR -1 261 46 24 0 0 0 chrX 69298443 69298467 -93301463 + AT_rich Low_complexity Low_complexity 1 24 0 246 279 93 12 chrX 69298883 69298969 -93300961 - MIR SINE MIR -90 118 26 302 289 39 39 chrX 69299081 69299209 -93300721 + MIR SINE MIR 92 219 -43 206 236 18 55 chrX 69299691 69299746 -93300184 - MIR SINE MIR -119 89 37 255 268 14 28 chrX 69299755 69299826 -93300104 + L2 LINE L2 3187 3256 -57 183 243 0 0 chrX 69300013 69300050 -93299880 - L3 LINE CR1 -2 1575 1539 302 246 88 35 chrX 69300186 69300300 -93299630 - MIR SINE MIR -39 223 104 201 336 80 62 chrX 69300588 69300701 -93299229 - L2 LINE L2 -37 3235 3121 2439 74 0 0 chrX 69301716 69302014 -93297916 - AluY SINE Alu -13 298 1 258 304 33 33 chrX 69303768 69303860 -93296070 - L3b LINE CR1 -329 1254 1163 4325 156 30 19 chrX 69303950 69305031 -93294899 + L1PA15 LINE L1 4404 5489 -676 6981 58 1 1 chrX 69305032 69306436 -93293494 + L1PA6 LINE L1 4758 6161 0 3799 132 24 41 chrX 69306439 69307121 -93292809 + L1PA15 LINE L1 5496 6165 0 237 105 53 0 chrX 69307137 69307175 -93292755 - Alu SINE Alu -177 125 86 233 333 0 23 chrX 69307241 69307328 -93292602 + CT-rich Low_complexity Low_complexity 3 87 0 1497 155 16 69 chrX 69307826 69308129 -93291801 - AluJb SINE Alu -25 287 1 4049 183 45 41 chrX 69308146 69309464 -93290466 + L1MB8 LINE L1 4868 6177 -1 621 226 109 70 chrX 69309460 69309770 -93290160 + L1MC4 LINE L1 7537 7874 -168 * 396 40 0 0 chrX 69309770 69309820 -93290110 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 621 226 109 70 chrX 69309820 69309996 -93289934 + L1MC4 LINE L1 7874 8042 0 4284 143 40 15 chrX 69310212 69310733 -93289197 - L1MA7 LINE L1 -145 6146 5596 2314 85 0 0 chrX 69310733 69311028 -93288902 - AluY SINE Alu -16 295 1 4284 143 40 15 chrX 69311028 69311313 -93288617 - L1MA7 LINE L1 -695 5596 5320 5545 113 20 11 chrX 69311318 69311643 -93288287 - L1PA13 LINE L1 -11 6152 5831 2082 115 14 3 chrX 69311643 69311931 -93287999 - AluSg SINE Alu -19 291 1 5545 113 20 11 chrX 69311931 69312518 -93287412 - L1PA13 LINE L1 -332 5831 5232 1763 172 8 0 chrX 69312514 69312869 -93287061 - L1MA7 LINE L1 -812 5334 4977 * 292 203 0 43 chrX 69312882 69312951 -93286979 + MIR3 SINE MIR 137 202 -6 748 227 74 39 chrX 69313692 69313895 -93286035 + MER63A DNA MER1_type 1 210 0 1282 73 11 0 chrX 69315143 69315322 -93284608 - L1MA2 LINE L1 -4 7719 7539 19128 162 30 27 chrX 69315324 69317281 -93282649 - L1MA2 LINE L1 -342 7381 5432 4267 26 0 0 chrX 69317281 69317781 -93282149 - L1PA4 LINE L1 -8 6147 5648 19128 162 30 27 chrX 69317781 69319946 -93279984 - L1MA2 LINE L1 -2291 5432 3275 2316 77 47 0 chrX 69319946 69320245 -93279685 + AluSp SINE Alu 1 313 0 19128 162 30 27 chrX 69320245 69323467 -93276463 - L1MA2 LINE L1 -4448 3275 13 235 235 0 0 chrX 69324000 69324051 -93275879 + (TATG)n Simple_repeat Simple_repeat 4 54 0 17595 165 8 19 chrX 69325500 69329494 -93270436 - L1PA14 LINE L1 -9 6152 2221 2322 97 0 0 chrX 69329494 69329794 -93270136 - AluY SINE Alu -11 300 1 17595 165 8 19 chrX 69329794 69330461 -93269469 - L1PA14 LINE L1 -3940 2221 1548 213 200 0 0 chrX 69330865 69330910 -93269020 - L2 LINE L2 -2 3270 3226 511 292 12 29 chrX 69332596 69332767 -93267163 + L3 LINE CR1 1159 1326 -251 232 345 102 22 chrX 69333530 69333756 -93266174 + MARNA DNA Mariner 337 580 -6 28 0 0 0 chrX 69333891 69333919 -93266011 + AT_rich Low_complexity Low_complexity 1 28 0 596 176 148 7 chrX 69334442 69334584 -93265346 - MLT1D LTR MaLR 0 505 344 469 174 20 31 chrX 69334581 69334679 -93265251 - MLT1D LTR MaLR -408 97 1 * 2117 154 0 3 chrX 69334790 69335133 -93264797 + MLT1A1 LTR MaLR 16 357 -8 14713 175 28 20 chrX 69335212 69339127 -93260803 + L1M2 LINE L1 10 3985 -2863 1525 233 39 88 chrX 69339127 69339771 -93260159 - LTR9 LTR ERV1 0 612 1 14713 175 28 20 chrX 69339771 69341471 -93258459 + L1M2 LINE L1 3985 5670 -1178 4708 182 42 31 chrX 69341477 69342586 -93257344 + L1M4 LINE L1 451 1571 -4971 392 197 40 0 chrX 69342586 69342662 -93257268 + MER7C DNA MER2_type 1 79 -523 20388 157 30 7 chrX 69342664 69347142 -93252788 + L1MA3 LINE L1 13 4722 -2843 * 21605 145 22 5 chrX 69347125 69348969 -93250961 + L1PA10 LINE L1 1186 2997 -3171 2018 145 0 3 chrX 69348969 69349266 -93250664 + AluSx SINE Alu 1 296 -16 21605 145 22 5 chrX 69349266 69350465 -93249465 + L1PA10 LINE L1 2997 4174 -1994 2382 118 19 25 chrX 69350465 69350788 -93249142 + THE1B LTR MaLR 1 323 -41 2267 120 0 0 chrX 69350788 69351089 -93248841 - AluSq SINE Alu -12 301 1 2382 118 19 25 chrX 69351089 69351131 -93248799 + THE1B LTR MaLR 323 364 0 10100 122 41 3 chrX 69351131 69352652 -93247278 + THE1B-int LTR MaLR 1 1580 0 2425 132 3 3 chrX 69352652 69353016 -93246914 + THE1B LTR MaLR 1 364 0 21605 145 22 5 chrX 69353016 69354871 -93245059 + L1PA10 LINE L1 4173 6164 -4 9265 151 15 12 chrX 69354892 69357184 -93242746 + L1MA3 LINE L1 4890 7190 -534 4479 150 55 82 chrX 69357184 69358285 -93241645 - MER11C LTR ERVK 0 1071 1 9265 151 15 12 chrX 69358285 69358640 -93241290 + L1MA3 LINE L1 7190 7542 -182 987 109 44 16 chrX 69358727 69358910 -93241020 + L1MA3 LINE L1 7537 7724 0 336 244 12 0 chrX 69358927 69359009 -93240921 + MER7C DNA MER2_type 65 147 -455 37 62 0 0 chrX 69359009 69359074 -93240856 + AT_rich Low_complexity Low_complexity 1 65 0 39463 39 22 1 chrX 69359074 69365096 -93234834 - L1PA3 LINE L1 -4 6151 1 1527 158 20 0 chrX 69365100 69365353 -93234577 + MER7C DNA MER2_type 345 602 0 636 179 17 0 chrX 69365358 69365475 -93234455 + L1M4c LINE L1 1318 1436 -4948 432 55 0 0 chrX 69367450 69367505 -93232425 + (CA)n Simple_repeat Simple_repeat 2 56 0 1016 153 36 63 chrX 69367578 69367800 -93232130 - MER20 DNA MER1_type 0 219 4 609 42 0 0 chrX 69368169 69368241 -93231689 + L1PA7 LINE L1 5710 5781 -373 44578 44 3 0 chrX 69368242 69374382 -93225548 + L1PA4 LINE L1 2 6154 -1 3282 50 0 0 chrX 69374399 69374779 -93225151 + L1PA7 LINE L1 5769 6148 -6 186 43 0 0 chrX 69375530 69375553 -93224377 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 594 113 0 0 chrX 69376029 69376126 -93223804 + (TC)n Simple_repeat Simple_repeat 2 98 0 708 199 0 34 chrX 69380020 69380089 -93219841 + L1MA2 LINE L1 3195 3265 -2881 1630 147 11 28 chrX 69380089 69380374 -93219556 + AluJb SINE Alu 1 280 -32 183 42 0 0 chrX 69380376 69380400 -93219530 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 708 199 0 34 chrX 69380400 69380503 -93219427 + L1MA2 LINE L1 3266 3364 -2782 * 7575 148 24 2 chrX 69380497 69381783 -93218147 + L1MA2 LINE L1 3569 4883 -1263 945 133 11 39 chrX 69381774 69381955 -93217975 + L1MA2 LINE L1 5903 6078 -226 * 236 232 244 12 chrX 69383277 69383359 -93216571 + MIR SINE MIR 30 130 -78 581 268 70 28 chrX 69383652 69383865 -93216065 + L3 LINE CR1 1110 1331 -246 5356 147 19 13 chrX 69383879 69384804 -93215126 + L1MC3 LINE L1 6855 7785 0 1808 160 37 13 chrX 69384796 69385177 -93214753 + L1 LINE L1 4223 4612 -1534 * 4336 138 1 8 chrX 69385176 69385881 -93214049 + L1MB3 LINE L1 4010 4709 -1437 * 5460 157 19 22 chrX 69385876 69386263 -93213667 + L1MB3 LINE L1 5107 5494 -689 2342 84 3 7 chrX 69386263 69386572 -93213358 + AluSc SINE Alu 1 308 -1 5460 157 19 22 chrX 69386572 69387264 -93212666 + L1MB3 LINE L1 5494 6180 -3 180 333 217 0 chrX 69387295 69387415 -93212515 + L3 LINE CR1 1407 1552 -25 231 188 0 0 chrX 69388414 69388462 -93211468 + (TA)n Simple_repeat Simple_repeat 2 49 0 555 16 0 0 chrX 69389403 69389467 -93210463 + (CA)n Simple_repeat Simple_repeat 1 64 0 245 288 0 27 chrX 69389758 69389831 -93210099 + MIR SINE MIR 57 127 -135 369 0 0 0 chrX 69389961 69390002 -93209928 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 111 0 0 chrX 69390774 69390801 -93209129 + (TC)n Simple_repeat Simple_repeat 1 27 0 187 266 16 16 chrX 69390880 69390944 -93208986 + MIR SINE MIR 83 146 -62 216 0 0 0 chrX 69391259 69391283 -93208647 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2074 141 0 13 chrX 69391609 69391922 -93208008 + AluSx SINE Alu 2 310 -2 1919 145 22 38 chrX 69392068 69392385 -93207545 + AluJo SINE Alu 1 312 0 338 170 27 89 chrX 69393590 69393702 -93206228 - MIR3 SINE MIR -10 198 94 200 205 0 0 chrX 69394761 69394800 -93205130 + (CA)n Simple_repeat Simple_repeat 1 39 0 2601 102 11 8 chrX 69394811 69395165 -93204765 + THE1A LTR MaLR 1 355 0 12579 94 8 0 chrX 69395165 69396733 -93203197 + THE1A-int LTR MaLR 1 1580 0 2266 132 26 9 chrX 69396733 69397081 -93202849 + THE1A LTR MaLR 1 354 -1 2073 100 54 0 chrX 69397218 69397497 -93202433 + AluSx SINE Alu 1 294 -18 503 224 0 0 chrX 69398826 69398911 -93201019 + MER3 DNA MER1_type 25 109 -100 4259 178 54 25 chrX 69398911 69400292 -93199638 + L1MDa LINE L1 840 2327 -4213 2381 200 29 42 chrX 69400335 69400454 -93199476 + L1MD2 LINE L1 5568 5687 -672 1815 123 3 84 chrX 69400454 69400802 -93199128 + AluSx SINE Alu 1 323 0 2381 200 29 42 chrX 69400802 69401233 -93198697 + L1MD2 LINE L1 5687 6114 -245 822 184 0 0 chrX 69401235 69401376 -93198554 + FLAM_C SINE Alu 1 141 -2 498 188 79 0 chrX 69401423 69401524 -93198406 + L1MD2 LINE L1 6237 6345 -14 1973 182 16 99 chrX 69401546 69402090 -93197840 + MLT1D LTR MaLR 1 499 -6 2580 123 62 8 chrX 69402434 69402834 -93197096 + MSTC LTR MaLR 7 428 0 272 254 63 16 chrX 69402981 69403044 -93196886 + L2 LINE L2 3203 3268 -4 2402 121 137 8 chrX 69403165 69403544 -93196386 + MSTA LTR MaLR 1 428 0 226 152 0 0 chrX 69404890 69404923 -93195007 - MER58 DNA MER1_type -297 44 12 199 380 70 10 chrX 69405090 69405290 -93194640 - L3b LINE CR1 -119 1464 1253 8060 34 0 0 chrX 69405705 69406860 -93193070 - L1PA3 LINE L1 0 6155 5001 254 105 0 0 chrX 69407611 69407649 -93192281 - L1MA3 LINE L1 0 6305 6268 297 0 0 0 chrX 69408418 69408451 -93191479 + (TG)n Simple_repeat Simple_repeat 1 33 0 252 143 0 0 chrX 69411083 69411125 -93188805 + (CCG)n Simple_repeat Simple_repeat 2 43 0 222 225 0 0 chrX 69411448 69411528 -93188402 + (CTG)n Simple_repeat Simple_repeat 1 80 0 419 111 0 14 chrX 69411561 69411633 -93188297 + (TCC)n Simple_repeat Simple_repeat 1 71 0 224 355 8 8 chrX 69411798 69411922 -93188008 + C-rich Low_complexity Low_complexity 4 127 0 624 205 113 7 chrX 69413024 69413175 -93186755 - MIR SINE MIR -3 259 93 1579 188 16 26 chrX 69413479 69413577 -93186353 - MER90 LTR ERV1 0 614 517 2058 158 91 17 chrX 69413577 69413938 -93185992 + MLT1B LTR MaLR 1 388 -2 1579 188 16 26 chrX 69413938 69414143 -93185787 - MER90 LTR ERV1 -97 517 314 756 215 62 6 chrX 69414152 69414329 -93185601 - MER90 LTR ERV1 -386 189 3 772 238 11 26 chrX 69414366 69414555 -93185375 + MIR SINE MIR 76 261 -1 243 311 49 0 chrX 69414602 69414663 -93185267 + L2 LINE L2 3116 3179 -93 211 233 0 0 chrX 69414682 69414725 -93185205 - MIR SINE MIR -1 261 219 195 377 82 16 chrX 69414859 69414981 -93184949 + L2 LINE L2 3121 3250 -22 318 353 82 8 chrX 69415269 69415391 -93184539 + MIR3 SINE MIR 37 167 -41 737 189 0 8 chrX 69417996 69418128 -93181802 + FLAM_C SINE Alu 3 133 0 268 281 37 44 chrX 69418133 69418268 -93181662 + MIR SINE MIR 118 251 -11 431 295 47 108 chrX 69418938 69419310 -93180620 + L2 LINE L2 2922 3270 -2 253 258 45 0 chrX 69419626 69419715 -93180215 + GA-rich Low_complexity Low_complexity 2 94 0 302 303 213 33 chrX 69419927 69420138 -93179792 + MIR SINE MIR 14 262 0 304 234 78 26 chrX 69420151 69420228 -93179702 + MIR SINE MIR 2 82 -180 757 231 96 44 chrX 69420288 69420517 -93179413 + MIR SINE MIR 8 248 -14 452 270 116 23 chrX 69420529 69420731 -93179199 - MIR SINE MIR -41 221 6 750 215 23 96 chrX 69421454 69421714 -93178216 + L2 LINE L2 3073 3313 0 617 303 118 31 chrX 69421722 69422045 -93177885 + L2 LINE L2 2945 3295 -18 3340 144 48 33 chrX 69422950 69423638 -93176292 - L1MB8 LINE L1 -5 6173 5476 11509 202 11 3 chrX 69423638 69426961 -93172969 - L1PA15 LINE L1 0 7603 4237 185 0 40 0 chrX 69426968 69426993 -93172937 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 643 13 0 0 chrX 69426993 69427068 -93172862 - L1PA5 LINE L1 -13 6141 6067 2580 201 32 28 chrX 69427068 69427823 -93172107 - L1PA15 LINE L1 -3329 4255 3498 690 127 22 8 chrX 69427823 69427957 -93171973 - L1PA15 LINE L1 -5111 2463 2328 476 288 41 29 chrX 69429106 69429422 -93170508 - L1PA15 LINE L1 -7261 320 1 3734 208 57 107 chrX 69429431 69430586 -93169344 - L1M4 LINE L1 -704 5480 4283 936 191 0 0 chrX 69430586 69430743 -93169187 - FRAM SINE Alu -15 161 5 3734 208 57 107 chrX 69430743 69431113 -93168817 - L1M4 LINE L1 -1901 4283 3896 799 316 163 24 chrX 69432107 69432852 -93167078 + L2 LINE L2 2416 3266 -6 22 0 0 0 chrX 69433052 69433074 -93166856 + AT_rich Low_complexity Low_complexity 1 22 0 277 284 91 0 chrX 69433640 69433728 -93166202 + L3 LINE CR1 1480 1575 -2 186 311 182 30 chrX 69434278 69434410 -93165520 + MIR SINE MIR 3 154 -108 2946 47 2 49 chrX 69434618 69435023 -93164907 - L1PA8 LINE L1 -3 6169 5784 2062 139 42 24 chrX 69435791 69436122 -93163808 + MER1B DNA MER1_type 1 337 0 366 258 65 0 chrX 69436161 69436254 -93163676 + MIR SINE MIR 23 121 -87 4796 129 45 27 chrX 69436255 69436646 -93163284 - L1MA8 LINE L1 -109 6182 5800 333 0 0 0 chrX 69436646 69436683 -93163247 + (CA)n Simple_repeat Simple_repeat 2 38 0 4796 129 45 27 chrX 69436683 69437024 -93162906 - L1MA8 LINE L1 -491 5800 5434 1295 103 75 19 chrX 69437024 69437238 -93162692 - L1PA10 LINE L1 -5 6163 5938 4796 129 45 27 chrX 69437238 69437454 -93162476 - L1MA8 LINE L1 -857 5434 5223 210 206 29 88 chrX 69437722 69437790 -93162140 - MIR3 SINE MIR -32 176 113 931 232 37 0 chrX 69437816 69438006 -93161924 - MIR SINE MIR 0 262 66 7441 33 1 1 chrX 69438085 69439491 -93160439 - L1PA3 LINE L1 -1 6154 4749 35756 42 1 1 chrX 69439491 69444085 -93155845 + L1PA3 LINE L1 160 4751 -1395 185 299 0 30 chrX 69444507 69444574 -93155356 + MIR SINE MIR 156 220 -42 192 40 0 0 chrX 69445433 69445458 -93154472 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 13782 38 3 2 chrX 69446119 69448559 -93151371 + L1PA5 LINE L1 3708 6148 -6 875 217 70 58 chrX 69448624 69448951 -93150979 - L1MD2 LINE L1 -1 6358 6028 1106 220 148 83 chrX 69449767 69450381 -93149549 - MLT1E2 LTR MaLR 0 626 1 1638 195 90 11 chrX 69450882 69451360 -93148570 + L1M4c LINE L1 1966 2481 -3903 298 273 165 54 chrX 69451370 69451630 -93148300 + L2 LINE L2 2612 2900 -414 208 301 176 20 chrX 69451674 69451827 -93148103 + L2 LINE L2 2977 3153 -119 285 316 94 26 chrX 69454056 69454173 -93145757 - L2 LINE L2 0 3272 3148 283 293 0 27 chrX 69454584 69454659 -93145271 - MIR SINE MIR -102 106 34 2266 85 7 29 chrX 69454768 69455075 -93144855 - AluSx SINE Alu -12 300 1 19085 41 0 3 chrX 69455634 69458785 -93141145 + L1PA6 LINE L1 2999 6152 -2 3998 163 39 11 chrX 69458785 69459920 -93140010 - L1 LINE L1 -3585 3980 2817 240 95 0 48 chrX 69460091 69460133 -93139797 + L1P4 LINE L1 5732 5771 -394 18803 39 2 0 chrX 69460205 69463297 -93136633 - L1PA3 LINE L1 -3 6152 3059 2481 104 32 16 chrX 69463332 69463764 -93136166 - L1MA3 LINE L1 -5 6300 5862 17000 46 3 1 chrX 69463864 69466907 -93133023 - L1PA4 LINE L1 -48 6107 3059 3672 102 25 8 chrX 69466942 69467533 -93132397 - L1MA3 LINE L1 -5 6300 5700 2837 141 2 2 chrX 69467534 69467989 -93131941 + L1PA15 LINE L1 5710 6164 -1 2565 167 9 16 chrX 69468021 69468754 -93131176 - L1MA3 LINE L1 -595 5710 4979 6162 82 0 3 chrX 69468788 69469011 -93130919 - L1PB1 LINE L1 -2 6149 5927 2020 156 0 0 chrX 69469011 69469306 -93130624 - AluSx SINE Alu -17 295 1 6162 82 0 3 chrX 69469306 69470171 -93129759 - L1PB1 LINE L1 -224 5927 5103 7039 116 164 2 chrX 69470171 69471445 -93128485 - L1PBa LINE L1 -4748 2115 636 924 172 31 0 chrX 69471447 69471639 -93128291 - L1PBa LINE L1 -6663 200 3 7093 171 5 24 chrX 69471649 69473142 -93126788 - L1MA3 LINE L1 -1141 5005 3542 4656 223 26 74 chrX 69473141 69474476 -93125454 + L1PBa LINE L1 16 1286 -6279 * 6857 128 30 30 chrX 69474471 69475944 -93123986 + L1PBa LINE L1 1163 2765 -4801 528 0 0 0 chrX 69475944 69476011 -93123919 + L1PA2 LINE L1 6089 6155 0 6857 128 30 30 chrX 69476011 69476234 -93123696 + L1PBa LINE L1 2765 2987 -4579 * 9677 159 32 8 chrX 69476206 69478402 -93121528 + L1M1 LINE L1 1734 3980 -3585 12720 56 3 7 chrX 69478402 69480524 -93119406 - L1PA6 LINE L1 -1 6153 4038 5757 68 55 3 chrX 69480524 69481265 -93118665 - LTR17 LTR ERV1 0 780 1 12720 56 3 7 chrX 69481265 69481588 -93118342 - L1PA6 LINE L1 -2116 4038 3715 9380 194 17 2 chrX 69481691 69483805 -93116125 + L1M1 LINE L1 4606 6751 -814 7568 17 0 0 chrX 69483815 69485330 -93114600 + L1HS LINE L1 4638 6152 -3 6032 113 20 8 chrX 69485324 69486338 -93113592 + L1MA1 LINE L1 5281 6302 0 * 1348 180 94 88 chrX 69486351 69486862 -93113068 - L1 LINE L1 -2583 3563 3050 7514 32 0 7 chrX 69486885 69488477 -93111453 - L1PA3 LINE L1 -3 6152 4566 3433 214 20 15 chrX 69488477 69489405 -93110525 - L1P LINE L1 -814 5332 4400 2925 232 98 6 chrX 69489485 69490559 -93109371 + L1M4 LINE L1 2614 3786 -2360 18782 150 65 10 chrX 69490563 69492933 -93106997 + L1MB8 LINE L1 12 2666 -4899 203 0 37 0 chrX 69492933 69492960 -93106970 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 18782 150 65 10 chrX 69492960 69494373 -93105557 + L1MB8 LINE L1 2666 4000 -3565 737 82 0 0 chrX 69494382 69494479 -93105451 + L1PA6 LINE L1 1 97 -6364 * 13905 118 14 24 chrX 69494469 69496890 -93103040 + L1PA6 LINE L1 1033 3428 -3033 8790 54 1 1 chrX 69496890 69498790 -93101140 + L1PA6 LINE L1 4565 6466 -3 371 186 8 34 chrX 69498818 69498936 -93100994 + L1MB8 LINE L1 6630 6744 -821 2773 185 42 47 chrX 69499046 69499537 -93100393 + L1MB8 LINE L1 6709 7196 -401 2360 98 0 0 chrX 69499537 69499834 -93100096 + AluY SINE Alu 1 297 -14 2773 185 42 47 chrX 69499834 69500081 -93099849 + L1MB8 LINE L1 7196 7443 -154 2196 126 13 40 chrX 69500268 69500640 -93099290 + THE1B LTR MaLR 3 364 0 11689 95 10 1 chrX 69500640 69502205 -93097725 + THE1B-int LTR MaLR 1 1580 0 2128 130 11 45 chrX 69502205 69502582 -93097348 + THE1B LTR MaLR 1 364 0 2110 130 3 3 chrX 69502669 69502969 -93096961 + AluSx SINE Alu 4 303 -9 721 234 15 25 chrX 69503178 69503375 -93096555 - MER58A DNA MER1_type -3 221 27 251 292 25 50 chrX 69503381 69503501 -93096429 - MIR3 SINE MIR -46 162 46 180 172 0 121 chrX 69503501 69503559 -93096371 + L3 LINE CR1 1434 1484 -93 6586 123 13 4 chrX 69503659 69505515 -93094415 + L1PA10 LINE L1 4297 6165 -3 517 211 39 16 chrX 69507590 69507718 -93092212 + L1M1 LINE L1 5 135 -7430 * 13380 174 38 7 chrX 69507714 69511520 -93088410 + L1M1 LINE L1 1105 5031 -2534 5036 124 21 9 chrX 69511638 69512527 -93087403 - L1MA1 LINE L1 -126 6176 5281 * 33504 48 6 2 chrX 69512521 69518656 -93081274 - L1PA4 LINE L1 -3 6152 13 1037 223 11 4 chrX 69518651 69518911 -93081019 - L1 LINE L1 -3103 4462 4201 * 3227 206 6 20 chrX 69518908 69519565 -93080365 - L1 LINE L1 -6900 665 18 5729 182 108 18 chrX 69519879 69522094 -93077836 - Charlie1 DNA MER1_type -6 2755 223 183 80 0 0 chrX 69522094 69522119 -93077811 + (TG)n Simple_repeat Simple_repeat 1 25 0 5729 182 108 18 chrX 69522119 69522365 -93077565 - Charlie1 DNA MER1_type -2538 223 1 1899 166 0 0 chrX 69522628 69522924 -93077006 + AluJb SINE Alu 1 296 -16 2238 164 31 24 chrX 69523307 69523723 -93076207 - MSTB1 LTR MaLR -13 419 1 1603 206 0 10 chrX 69523871 69524201 -93075729 + AluJo SINE Alu 1 312 0 634 139 0 0 chrX 69524534 69524635 -93075295 - FLAM_A SINE Alu -16 126 26 23 54 0 0 chrX 69524690 69524727 -93075203 + AT_rich Low_complexity Low_complexity 1 37 0 4107 130 11 3 chrX 69524728 69525382 -93074548 - L1MA1 LINE L1 -6 7715 7057 14211 174 32 15 chrX 69525382 69526505 -93073425 - L1MA1 LINE L1 -1263 6302 5199 242 156 0 0 chrX 69526505 69526550 -93073380 + MADE1 DNA Mariner 36 80 0 14211 174 32 15 chrX 69526550 69530497 -93069433 - L1MA1 LINE L1 -2366 5199 1103 556 211 39 16 chrX 69530491 69530619 -93069311 - L1MA1 LINE L1 -7430 135 5 * 6644 123 14 5 chrX 69532694 69534552 -93065378 - L1PA10 LINE L1 -3 6165 4297 252 292 25 50 chrX 69534710 69534830 -93065100 + MIR3 SINE MIR 46 162 -46 782 234 15 25 chrX 69534836 69535033 -93064897 + MER58A DNA MER1_type 27 221 -3 2092 130 3 3 chrX 69535242 69535542 -93064388 - AluSx SINE Alu -9 303 4 2126 130 11 45 chrX 69535629 69536006 -93063924 - THE1B LTR MaLR 0 364 1 11625 95 10 1 chrX 69536006 69537571 -93062359 - THE1B-int LTR MaLR 0 1580 1 2194 126 13 40 chrX 69537571 69537943 -93061987 - THE1B LTR MaLR 0 364 3 2985 185 42 47 chrX 69538130 69538377 -93061553 - L1MB8 LINE L1 -154 6024 5777 2244 99 7 0 chrX 69538377 69538671 -93061259 - AluY SINE Alu -15 296 1 2985 185 42 47 chrX 69538671 69539162 -93060768 - L1MB8 LINE L1 -401 5777 5290 399 186 8 34 chrX 69539262 69539380 -93060550 - L1MB8 LINE L1 -821 5325 5211 8543 54 3 0 chrX 69539408 69541273 -93058657 - L1PA6 LINE L1 -3 6151 4285 656 25 0 0 chrX 69541273 69541354 -93058576 - L1PA6 LINE L1 -1816 4330 4250 * 20876 107 12 14 chrX 69541351 69544462 -93055468 - L1P LINE L1 -3030 3116 11 1869 241 30 6 chrX 69544485 69544978 -93054952 - L1MB8 LINE L1 -948 5198 4694 1309 229 36 34 chrX 69544964 69545348 -93054582 - L1MB8 LINE L1 -1984 4162 3778 * 5415 168 110 16 chrX 69545348 69547422 -93052508 - L1MA2 LINE L1 0 7723 5396 3416 168 30 5 chrX 69547422 69548048 -93051882 - L1PA16 LINE L1 0 6166 5525 1568 129 15 16 chrX 69548048 69548395 -93051535 + L1PA16 LINE L1 5176 5521 -645 * 4945 225 41 16 chrX 69548392 69549765 -93050165 - L1MA2 LINE L1 -2157 5408 4002 13151 80 5 2 chrX 69549767 69552349 -93047581 - L1PA7 LINE L1 -8 6461 3871 16191 127 24 22 chrX 69552725 69555583 -93044347 - L1PA7 LINE L1 -2566 3895 1033 774 82 0 0 chrX 69555573 69555670 -93044260 - L1PA7 LINE L1 -6364 97 1 * 19935 150 65 10 chrX 69555679 69557090 -93042840 - L1MA2 LINE L1 -3565 4000 2669 203 0 37 0 chrX 69557090 69557117 -93042813 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 19935 150 65 10 chrX 69557117 69559486 -93040444 - L1MA2 LINE L1 -4896 2669 12 3188 232 98 6 chrX 69559490 69560564 -93039366 - L1M4b LINE L1 -2360 4597 3425 3750 212 23 15 chrX 69560644 69561570 -93038360 + L1P LINE L1 4400 5332 -814 7317 34 2 1 chrX 69561570 69563186 -93036744 + L1PA4 LINE L1 4566 6177 0 4851 138 54 7 chrX 69563532 69564384 -93035546 + L1PA16 LINE L1 5270 6161 -5 462 270 99 50 chrX 69564405 69564727 -93035203 - L1M4b LINE L1 -4320 2818 2481 1436 247 123 20 chrX 69564838 69565547 -93034383 - L1M4b LINE L1 -4551 2408 1626 351 0 0 0 chrX 69565547 69565586 -93034344 + (CA)n Simple_repeat Simple_repeat 2 40 0 1436 247 123 20 chrX 69565586 69565600 -93034330 - L1M4b LINE L1 -5333 1626 1615 834 235 5 10 chrX 69565602 69565802 -93034128 - L1M4b LINE L1 -5365 1494 1296 2401 261 55 71 chrX 69566249 69567261 -93032669 - L1M4b LINE L1 -5635 1224 11 620 152 0 0 chrX 69567286 69567378 -93032552 - U4 snRNA snRNA -29 116 25 447 222 30 10 chrX 69567460 69567559 -93032371 + MIR3 SINE MIR 105 205 -3 2506 43 0 3 chrX 69570669 69570970 -93028960 + AluY SINE Alu 1 300 -11 2063 142 3 0 chrX 69570981 69571291 -93028639 + AluSx SINE Alu 1 311 -1 803 230 86 79 chrX 69572781 69573186 -93026744 - HAL1 LINE L1 -185 2322 1915 585 220 40 27 chrX 69573206 69573356 -93026574 - HAL1 LINE L1 -1049 1458 1307 324 132 0 0 chrX 69573361 69573414 -93026516 + MADE1 DNA Mariner 27 79 -1 273 234 234 0 chrX 69573417 69573554 -93026376 - HAL1 LINE L1 -1222 1285 1117 2846 236 154 45 chrX 69573638 69573899 -93026031 - L1MC4 LINE L1 -30 8012 7781 849 111 0 76 chrX 69573899 69574043 -93025887 + FLAM_C SINE Alu 1 133 0 2846 236 154 45 chrX 69574043 69574333 -93025597 - L1MC4 LINE L1 -261 7781 7524 780 164 0 0 chrX 69574333 69574461 -93025469 - FLAM_C SINE Alu -5 128 1 2846 236 154 45 chrX 69574461 69575851 -93024079 - L1MC4 LINE L1 -518 7524 5839 719 122 0 17 chrX 69575860 69575975 -93023955 - FLAM_A SINE Alu -9 133 21 1164 294 80 78 chrX 69576090 69576928 -93023002 - HAL1 LINE L1 -1666 841 2 1820 132 45 14 chrX 69577668 69577957 -93021973 + AluJb SINE Alu 3 300 -12 267 174 267 12 chrX 69581522 69581608 -93018322 - MIR3 SINE MIR -87 121 14 182 319 0 0 chrX 69582705 69582752 -93017178 + MIR SINE MIR 204 250 -12 1117 260 73 58 chrX 69583855 69584498 -93015432 - L1ME4a LINE L1 -91 6030 5378 24 0 0 0 chrX 69584886 69584910 -93015020 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chrX 69584935 69584972 -93014958 + AT_rich Low_complexity Low_complexity 1 37 0 539 210 62 14 chrX 69584992 69585158 -93014772 + L1MA9 LINE L1 6119 6284 -7 1324 284 78 16 chrX 69585250 69585802 -93014128 - L1ME4a LINE L1 -191 5930 5345 2264 116 0 0 chrX 69585946 69586256 -93013674 - AluSx SINE Alu -2 310 1 197 221 0 103 chrX 69586294 69586362 -93013568 - MER5A DNA MER1_type -22 167 107 598 158 10 9 chrX 69586433 69586565 -93013365 - L1MA9 LINE L1 -1 6290 6163 257 381 0 0 chrX 69586907 69586991 -93012939 - L2 LINE L2 -11 3261 3178 367 299 246 5 chrX 69587059 69587266 -93012664 - MIR SINE MIR 0 262 6 2166 92 7 0 chrX 69588332 69588645 -93011285 - AluSp SINE Alu 0 315 1 180 0 0 0 chrX 69589418 69589438 -93010492 + (CAA)n Simple_repeat Simple_repeat 2 21 0 221 339 135 52 chrX 69590412 69590642 -93009288 + L2 LINE L2 3019 3267 -5 6198 126 89 14 chrX 69590776 69591921 -93008009 - Tigger3b DNA MER2_type 0 1231 1 1203 282 70 25 chrX 69592645 69593241 -93006689 + L1ME3A LINE L1 5303 5925 -245 * 4782 113 33 11 chrX 69592727 69593476 -93006454 + L1PA15 LINE L1 5400 6165 0 247 380 0 0 chrX 69594413 69594492 -93005438 - MIR3 SINE MIR -46 162 84 232 315 117 31 chrX 69595437 69595599 -93004331 + L2 LINE L2 3132 3307 -6 2224 95 0 0 chrX 69596373 69596658 -93003272 - AluSg SINE Alu -4 306 22 652 133 0 19 chrX 69596884 69596989 -93002941 - L1PB4 LINE L1 -8 6148 6046 244 299 172 30 chrX 69597063 69597197 -93002733 - MIR3 SINE MIR -11 197 45 3646 208 55 58 chrX 69597963 69598787 -93001143 - L1MD2 LINE L1 -7 6352 5531 2032 113 3 0 chrX 69598787 69599071 -93000859 - AluSx SINE Alu -27 285 1 3646 208 55 58 chrX 69599071 69599392 -93000538 - L1MD2 LINE L1 -828 5531 5211 2156 214 90 13 chrX 69599405 69599961 -92999969 + L1ME1 LINE L1 827 1425 -5115 3447 209 53 44 chrX 69600354 69601449 -92998481 + L1ME1 LINE L1 1431 2535 -4005 1200 218 17 101 chrX 69601468 69601606 -92998324 + L1ME1 LINE L1 4694 4842 -1698 1114 170 9 27 chrX 69601606 69601829 -92998101 - MER20 DNA MER1_type 0 219 1 1200 218 17 101 chrX 69601829 69602283 -92997647 + L1ME1 LINE L1 4842 5236 -1304 2303 231 4 12 chrX 69602288 69602790 -92997140 + MLT1D LTR MaLR 1 498 -7 3099 224 45 19 chrX 69602959 69604069 -92995861 + L1ME1 LINE L1 5400 6543 -17 2248 108 0 0 chrX 69604321 69604616 -92995314 - AluSx SINE Alu -17 295 1 1891 179 43 56 chrX 69605275 69605721 -92994209 + MER41B LTR ERV1 162 601 -34 22 56 0 0 chrX 69605878 69605914 -92994016 + AT_rich Low_complexity Low_complexity 1 36 0 3306 224 73 45 chrX 69606611 69609515 -92990415 + L1MCb LINE L1 799 3988 -2576 6924 63 0 1 chrX 69659522 69660667 -92939263 + L1PA7 LINE L1 4990 6139 -15 188 35 35 0 chrX 69660667 69660696 -92939234 + (TA)n Simple_repeat Simple_repeat 2 31 0 741 221 76 28 chrX 69660926 69661147 -92938783 - MIR SINE MIR 0 262 32 594 293 107 42 chrX 69661318 69661765 -92938165 + L1M4 LINE L1 2 477 -6065 395 258 68 81 chrX 69661873 69662195 -92937735 + HAL1 LINE L1 1160 1477 -1030 360 340 0 0 chrX 69662254 69662395 -92937535 + HAL1 LINE L1 1483 1623 -884 355 191 86 19 chrX 69662398 69662503 -92937427 + L1ME3A LINE L1 6059 6170 0 14531 222 19 20 chrX 69662683 69669114 -92930816 + L1PA15 LINE L1 1181 7603 0 803 178 3 11 chrX 69669128 69669294 -92930636 + L1M4 LINE L1 5363 5528 -646 312 27 0 0 chrX 69669294 69669331 -92930599 + (CA)n Simple_repeat Simple_repeat 1 37 0 249 258 0 30 chrX 69669376 69669442 -92930488 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 329 258 18 167 chrX 69669693 69669802 -92930128 - MER5A DNA MER1_type -1 188 127 2123 104 7 3 chrX 69669802 69670099 -92929831 + AluSc SINE Alu 1 298 -11 329 258 18 167 chrX 69670099 69670210 -92929720 - MER5A DNA MER1_type -62 127 1 201 340 162 20 chrX 69670222 69670475 -92929455 + L2 LINE L2 2689 2977 -337 237 304 103 18 chrX 69671015 69671288 -92928642 + L1M4 LINE L1 4414 4709 -1437 612 238 8 0 chrX 69671358 69671484 -92928446 + FLAM_A SINE Alu 1 127 -6 800 216 138 14 chrX 69672355 69672652 -92927278 - L1ME4a LINE L1 -29 6092 5759 6785 189 30 13 chrX 69672771 69675317 -92924613 + L1MC2 LINE L1 3593 6184 -160 997 149 5 55 chrX 69675418 69675619 -92924311 + L1MC2 LINE L1 6132 6322 -22 180 0 0 0 chrX 69675625 69675645 -92924285 + (TAA)n Simple_repeat Simple_repeat 1 20 0 351 44 0 0 chrX 69675875 69675920 -92924010 + (TA)n Simple_repeat Simple_repeat 2 46 0 2315 98 0 0 chrX 69676293 69676589 -92923341 + AluSq SINE Alu 1 296 -17 477 348 99 68 chrX 69678272 69679273 -92920657 + L2 LINE L2 2033 3091 -181 21 0 0 0 chrX 69679631 69679652 -92920278 + AT_rich Low_complexity Low_complexity 1 21 0 615 186 320 0 chrX 69679660 69679816 -92920114 - MIR SINE MIR -26 236 31 2498 85 0 0 chrX 69679886 69680192 -92919738 + AluSx SINE Alu 1 306 -6 622 291 22 0 chrX 69681770 69681949 -92917981 + L1ME LINE L1 5477 5659 -462 867 343 97 31 chrX 69681982 69682716 -92917214 + L2 LINE L2 2521 3313 0 225 220 231 28 chrX 69682718 69682900 -92917030 + L1ME LINE L1 5679 5897 -224 5696 187 46 19 chrX 69683917 69686100 -92913830 - L1MA4A LINE L1 -6 6297 3901 8723 183 41 22 chrX 69686101 69688658 -92911272 + L1P5 LINE L1 3191 5802 -354 7622 198 37 26 chrX 69688650 69690277 -92909653 + L1M1 LINE L1 14 1658 -5907 * 186 143 0 0 chrX 69690906 69690941 -92908989 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 728 164 0 8 chrX 69692831 69692953 -92906977 + FLAM_A SINE Alu 1 121 -12 360 291 117 0 chrX 69693066 69693169 -92906761 + L2 LINE L2 3199 3313 0 1092 202 75 36 chrX 69693207 69693459 -92906471 - MIR SINE MIR 0 262 1 232 316 68 60 chrX 69695373 69695506 -92904424 + L2 LINE L2 3137 3270 -2 2512 78 0 0 chrX 69696840 69697149 -92902781 + AluSc SINE Alu 1 309 0 276 30 0 0 chrX 69697258 69697291 -92902639 + (T)n Simple_repeat Simple_repeat 1 33 0 3740 109 48 63 chrX 69697515 69698321 -92901609 + MER4D LTR ERV1 1 610 0 3647 94 40 24 chrX 69698517 69699062 -92900868 + MER41A LTR ERV1 1 554 0 4016 133 49 21 chrX 69699062 69699769 -92900161 + MER41A-int LTR ERV1 1 635 -5311 * 12176 137 41 35 chrX 69699745 69702182 -92897748 + MER41A-int LTR ERV1 2166 4587 -1359 2037 109 33 0 chrX 69702182 69702480 -92897450 + AluSx SINE Alu 1 307 0 12176 137 41 35 chrX 69702480 69702860 -92897070 + MER41A-int LTR ERV1 4587 4963 -983 2381 88 0 25 chrX 69702860 69703177 -92896753 + AluSx SINE Alu 1 309 -3 12176 137 41 35 chrX 69703177 69703888 -92896042 + MER41A-int LTR ERV1 4963 5944 -2 2992 119 0 0 chrX 69703888 69704316 -92895614 + MER41A LTR ERV1 1 428 -126 4591 173 55 6 chrX 69704318 69704715 -92895215 - L1M2 LINE L1 -601 5711 5335 306 0 0 0 chrX 69704715 69704749 -92895181 + (TG)n Simple_repeat Simple_repeat 2 35 0 4591 173 55 6 chrX 69704749 69705659 -92894271 - L1M2 LINE L1 -977 5335 4356 1556 203 20 3 chrX 69705659 69705965 -92893965 - MER58B DNA MER1_type -30 311 1 14402 92 1 20 chrX 69708184 69710316 -92889614 + L1P LINE L1 2914 5004 -1142 670 242 5 43 chrX 69710479 69710665 -92889265 - L1ME LINE L1 -383 5738 5560 * 2157 203 25 14 chrX 69710651 69711003 -92888927 + L1MC4a LINE L1 6734 7094 -714 2107 150 12 3 chrX 69711003 69711344 -92888586 + MER2 DNA MER2_type 1 344 0 2157 203 25 14 chrX 69711344 69711480 -92888450 + L1MC4a LINE L1 7094 7227 -581 550 285 47 91 chrX 69711480 69711799 -92888131 + L2 LINE L2 2965 3269 -3 3345 83 0 2 chrX 69712006 69712452 -92887478 - THE1B-int LTR MaLR -1135 445 1 2132 124 69 17 chrX 69712452 69712798 -92887132 - THE1B LTR MaLR 0 364 1 381 280 24 48 chrX 69712972 69713140 -92886790 + L2 LINE L2 2588 2751 -563 791 206 82 5 chrX 69713142 69713326 -92886604 + MER3 DNA MER1_type 7 204 -5 21 0 0 0 chrX 69713562 69713583 -92886347 + AT_rich Low_complexity Low_complexity 1 21 0 5291 143 11 9 chrX 69713914 69714809 -92885121 + L1PA13 LINE L1 3433 4329 -1817 197 77 51 0 chrX 69714830 69714869 -92885061 + A-rich Low_complexity Low_complexity 2 42 0 6218 93 12 8 chrX 69714869 69716713 -92883217 + L1PA13 LINE L1 4315 6153 -10 2369 103 0 0 chrX 69716716 69717027 -92882903 + AluSx SINE Alu 1 311 -1 258 208 52 26 chrX 69717262 69717339 -92882591 - L1ME4a LINE L1 -97 6024 5946 2301 138 13 26 chrX 69717367 69717752 -92882178 + MLT1B LTR MaLR 1 380 -10 203 349 0 0 chrX 69718448 69718514 -92881416 - L2 LINE L2 -2 3270 3205 205 376 94 33 chrX 69718616 69718829 -92881101 - L2 LINE L2 -182 3090 2865 237 293 57 41 chrX 69718890 69719013 -92880917 - L2 LINE L2 -552 2762 2638 230 322 78 0 chrX 69720559 69720649 -92879281 - MIR3 SINE MIR -23 185 89 288 299 52 0 chrX 69720937 69721034 -92878896 - L3 LINE CR1 -1211 366 265 1905 174 96 9 chrX 69721066 69721400 -92878530 + MLT1A1 LTR MaLR 3 365 0 206 288 51 106 chrX 69721408 69721539 -92878391 - L3b LINE CR1 -196 1387 1273 2210 122 0 0 chrX 69721539 69721842 -92878088 - AluSx SINE Alu -9 303 1 206 288 51 106 chrX 69721842 69721946 -92877984 - L3b LINE CR1 -310 1273 1165 1739 68 0 9 chrX 69721957 69722178 -92877752 - AluY SINE Alu -9 302 84 276 30 0 0 chrX 69722611 69722644 -92877286 + (TG)n Simple_repeat Simple_repeat 2 34 0 204 175 25 0 chrX 69722644 69722684 -92877246 + (TA)n Simple_repeat Simple_repeat 1 41 0 346 210 59 8 chrX 69722685 69722804 -92877126 + MER112 DNA MER1_type 92 216 -44 193 182 0 0 chrX 69722808 69722841 -92877089 + MIR3 SINE MIR 164 196 -12 292 356 119 51 chrX 69723408 69723762 -92876168 + L2 LINE L2 2827 3204 -68 286 321 111 25 chrX 69723971 69724133 -92875797 + L2 LINE L2 3097 3272 0 410 172 54 43 chrX 69725400 69725493 -92874437 - MER53 DNA DNA 0 189 96 252 0 0 0 chrX 69725782 69725810 -92874120 + (CA)n Simple_repeat Simple_repeat 1 28 0 430 329 151 19 chrX 69726382 69726707 -92873223 - L2 LINE L2 -456 2858 2491 213 306 0 16 chrX 69726774 69726836 -92873094 - L2 LINE L2 -10 3303 3243 522 240 77 38 chrX 69727308 69727491 -92872439 - MIR SINE MIR -53 209 20 677 318 37 12 chrX 69727543 69727785 -92872145 + L2 LINE L2 2877 3124 -189 308 241 0 0 chrX 69727801 69727859 -92872071 + MER5A DNA MER1_type 14 71 -118 2352 125 16 11 chrX 69727860 69728227 -92871703 - L1MA4 LINE L1 -158 6142 5774 612 153 77 66 chrX 69728194 69728390 -92871540 + L1MA4 LINE L1 6103 6300 0 * 207 294 226 20 chrX 69728390 69728492 -92871438 + MER5A DNA MER1_type 66 188 -1 2284 91 27 0 chrX 69728653 69728950 -92870980 - AluY SINE Alu -6 305 1 279 247 62 31 chrX 69729001 69729098 -92870832 - HAL1 LINE L1 -2372 135 36 269 194 16 105 chrX 69729097 69729221 -92870709 - L1MEd LINE L1 -5948 171 59 * 1503 185 19 16 chrX 69729402 69729710 -92870220 - AluJo SINE Alu -1 311 3 226 259 0 0 chrX 69729859 69729913 -92870017 + (TA)n Simple_repeat Simple_repeat 2 55 0 629 284 131 14 chrX 69730000 69730030 -92869900 - MIR SINE MIR -10 252 227 189 0 0 0 chrX 69730030 69730051 -92869879 + (CACTG)n Simple_repeat Simple_repeat 5 25 0 629 284 131 14 chrX 69730051 69730242 -92869688 - MIR SINE MIR -35 227 5 23 0 0 0 chrX 69730266 69730289 -92869641 + AT_rich Low_complexity Low_complexity 1 23 0 657 303 28 24 chrX 69730450 69730704 -92869226 - MIR SINE MIR 0 262 8 1118 60 0 8 chrX 69731000 69731133 -92868797 - AluSq/x SINE Alu -179 133 2 2891 209 21 58 chrX 69731775 69732453 -92867477 - MLT1E1 LTR MaLR -1 653 1 2712 148 53 20 chrX 69732480 69732622 -92867308 + L1MB8 LINE L1 5657 5793 -385 1331 247 68 36 chrX 69732622 69732778 -92867152 + MSTD LTR MaLR 1 151 -245 1975 142 4 0 chrX 69732778 69733087 -92866843 + AluSx SINE Alu 1 310 0 1331 247 68 36 chrX 69733087 69733313 -92866617 + MSTD LTR MaLR 151 396 0 2712 148 53 20 chrX 69733313 69733675 -92866255 + L1MB8 LINE L1 5793 6178 0 227 234 31 16 chrX 69733779 69733843 -92866087 + MIR SINE MIR 148 212 -50 266 261 80 112 chrX 69733953 69734202 -92865728 - L3b LINE CR1 -172 1411 1171 835 161 0 51 chrX 69734647 69734784 -92865146 - FLAM_C SINE Alu -2 131 2 1047 275 127 14 chrX 69735477 69735965 -92863965 - L1ME3 LINE L1 -2 6160 5618 256 272 96 57 chrX 69735967 69736253 -92863677 - L1ME3 LINE L1 -660 5506 5215 707 117 8 0 chrX 69736525 69736645 -92863285 - L1P LINE L1 -764 5401 5281 5153 105 15 22 chrX 69737346 69737403 -92862527 - L1PB1 LINE L1 -2 6149 6093 2306 94 3 3 chrX 69737403 69737711 -92862219 - AluSp SINE Alu -5 308 1 5153 105 15 22 chrX 69737711 69738393 -92861537 - L1PB1 LINE L1 -58 6093 5415 10163 130 54 6 chrX 69738394 69738918 -92861012 - L1PBa LINE L1 -3235 3627 3129 2361 100 0 0 chrX 69738918 69739219 -92860711 - AluSx SINE Alu -11 301 1 10163 130 54 6 chrX 69739219 69741418 -92858512 - L1PBa LINE L1 -3733 3129 628 8471 120 93 65 chrX 69741421 69743655 -92856275 - pTR5 LTR ERV1 0 8399 504 555 169 43 73 chrX 69743711 69743970 -92855960 - HERV17 LTR ERV1 -5822 1074 703 16110 102 10 9 chrX 69744037 69747335 -92852595 - HERV17 LTR ERV1 -1935 503 17 4274 111 14 194 chrX 69747335 69748964 -92850966 - pTR5 LTR ERV1 0 2606 1524 2216 243 28 7 chrX 69749011 69749551 -92850379 - L1PBa LINE L1 -6312 551 1 11155 194 14 5 chrX 69749589 69751883 -92848047 - L1PA13 LINE L1 -837 5960 3646 195 42 0 0 chrX 69751884 69751908 -92848022 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 42208 50 24 1 chrX 69751908 69757925 -92842005 - L1PA5 LINE L1 -4 6150 1 22807 87 8 0 chrX 69757926 69760980 -92838950 - L1P LINE L1 -3058 3088 11 11355 211 16 49 chrX 69760987 69764762 -92835168 - L1PA13 LINE L1 -3137 3660 3 1021 213 24 0 chrX 69764819 69765030 -92834900 - L1M4 LINE L1 -1414 4732 4517 1113 108 13 19 chrX 69765057 69765214 -92834716 - FRAM SINE Alu -23 153 1 2077 135 3 0 chrX 69765447 69765758 -92834172 + AluSx SINE Alu 1 312 0 595 302 15 45 chrX 69766132 69766463 -92833467 + L1MEd LINE L1 606 926 -5193 2754 215 136 19 chrX 69766467 69767308 -92832622 + L1ME2 LINE L1 5223 6154 -10 408 222 39 46 chrX 69767323 69767476 -92832454 + L1MC5 LINE L1 7774 7925 -36 5964 166 23 4 chrX 69767601 69768615 -92831315 + L1M1 LINE L1 132 1164 -6401 965 69 0 0 chrX 69768626 69768742 -92831188 - L1PA7 LINE L1 -1 6153 6038 420 39 0 0 chrX 69768742 69768793 -92831137 - L1P2 LINE L1 -619 5535 5485 * 733 106 31 5 chrX 69768783 69768920 -92831010 - L1ME LINE L1 -718 5436 5293 309 347 159 41 chrX 69768920 69769191 -92830739 + L2 LINE L2 2399 2701 -613 1904 147 3 3 chrX 69769193 69769485 -92830445 + AluSx SINE Alu 1 292 -20 1537 176 46 30 chrX 69769551 69769853 -92830077 + AluJo SINE Alu 1 307 -5 344 346 28 96 chrX 69769986 69770350 -92829580 + L2 LINE L2 2909 3247 -25 2459 150 98 23 chrX 69770874 69771201 -92828729 + L1MCa LINE L1 1813 2114 -4312 782 168 0 36 chrX 69771201 69771338 -92828592 + FLAM_C SINE Alu 2 133 0 2459 150 98 23 chrX 69771338 69771584 -92828346 + L1MCa LINE L1 2114 2429 -3997 826 104 0 0 chrX 69771584 69771690 -92828240 + U6 snRNA snRNA 1 106 -1 4214 130 8 0 chrX 69771690 69772329 -92827601 + L1P LINE L1 1995 2638 -3508 2025 144 187 8 chrX 69772330 69772363 -92827567 - LTR46 LTR ERV1 0 460 434 525 16 0 0 chrX 69772363 69772425 -92827505 + (CA)n Simple_repeat Simple_repeat 2 63 0 2025 144 187 8 chrX 69772425 69772781 -92827149 - LTR46 LTR ERV1 -26 434 1 6353 120 4 2 chrX 69772781 69773692 -92826238 - LTR46-int LTR ERV1 0 6985 6073 * 8149 108 1 15 chrX 69773689 69773970 -92825960 - LTR46-int LTR ERV1 -1161 5824 5540 2879 9 0 22 chrX 69773970 69774294 -92825636 + AluYb8 SINE Alu 1 317 -1 8149 108 1 15 chrX 69774294 69775193 -92824737 - LTR46-int LTR ERV1 -1445 5540 4661 34988 115 11 16 chrX 69775378 69775646 -92824284 - LTR46-int LTR ERV1 -1174 5811 5543 2661 43 0 21 chrX 69775646 69775971 -92823959 + AluYb8 SINE Alu 1 318 0 34988 115 11 16 chrX 69775971 69777234 -92822696 - LTR46-int LTR ERV1 -1442 5543 4276 2323 100 0 0 chrX 69777234 69777525 -92822405 - AluY SINE Alu -20 291 1 34988 115 11 16 chrX 69777525 69779931 -92819999 - LTR46-int LTR ERV1 -2709 4276 1898 2336 106 3 0 chrX 69779931 69780234 -92819696 - AluSq SINE Alu -9 304 1 34988 115 11 16 chrX 69780234 69781470 -92818460 - LTR46-int LTR ERV1 -5087 1898 658 4336 100 7 10 chrX 69781738 69782338 -92817592 - LTR46-int LTR ERV1 -6387 598 1 1623 160 31 23 chrX 69782338 69782742 -92817188 - LTR46 LTR ERV1 0 460 1 1930 149 19 0 chrX 69782743 69783066 -92816864 + L1P LINE L1 2636 2964 -3182 3567 71 15 11 chrX 69783066 69783525 -92816405 + L1PA10 LINE L1 5705 6168 0 2687 239 31 8 chrX 69784014 69785189 -92814741 + L1MA10 LINE L1 2497 3644 -3084 1735 192 0 10 chrX 69785189 69785481 -92814449 + AluJo SINE Alu 1 289 -23 2687 239 31 8 chrX 69785481 69785518 -92814412 + L1MA10 LINE L1 3644 3679 -3049 387 0 0 0 chrX 69785518 69785561 -92814369 + (CA)n Simple_repeat Simple_repeat 2 44 0 2687 239 31 8 chrX 69785561 69785651 -92814279 + L1MA10 LINE L1 3679 6652 -76 4298 226 28 28 chrX 69785689 69786266 -92813664 + L1MDa LINE L1 3291 3867 -2673 833 129 29 22 chrX 69786266 69786405 -92813525 + L1PA16 LINE L1 6025 6164 -2 4298 226 28 28 chrX 69786405 69787025 -92812905 + L1MDa LINE L1 3866 4488 -2052 2531 44 3 0 chrX 69787319 69787614 -92812316 - AluY SINE Alu -15 296 1 3578 35 0 0 chrX 69787788 69788217 -92811713 - L1PA3 LINE L1 -1415 4731 4303 8289 21 0 0 chrX 69788217 69789610 -92810320 + L1PA3 LINE L1 4760 6152 -3 27 0 0 0 chrX 69790089 69790116 -92809814 + AT_rich Low_complexity Low_complexity 1 27 0 835 214 19 15 chrX 69790205 69790411 -92809519 + L1 LINE L1 2411 2617 -3529 22446 154 17 10 chrX 69790428 69794490 -92805440 - L1 LINE L1 -3455 4110 16 1942 215 53 40 chrX 69794491 69795150 -92804780 - L1M4 LINE L1 -5069 1786 1120 1559 298 62 38 chrX 69795177 69795754 -92804176 - L1M4 LINE L1 -5825 1034 444 668 179 62 0 chrX 69795758 69795870 -92804060 + FLAM_C SINE Alu 14 132 -11 387 0 0 0 chrX 69795884 69795927 -92804003 + (CA)n Simple_repeat Simple_repeat 1 43 0 756 232 89 8 chrX 69795932 69796314 -92803616 - L1M4 LINE L1 -6405 454 8 2441 251 72 56 chrX 69796316 69797480 -92802450 + L2 LINE L2 2127 3313 0 371 333 45 8 chrX 69798036 69798168 -92801762 - MIR3 SINE MIR -52 156 20 1111 289 60 21 chrX 69798575 69798907 -92801023 - LTR16A LTR ERVL 0 450 106 2786 141 27 14 chrX 69799399 69799882 -92800048 + L1MA9 LINE L1 5824 6312 0 15495 135 27 9 chrX 69799985 69802502 -92797428 + L1PB1 LINE L1 82 2642 -4221 * 42358 44 22 3 chrX 69802498 69808522 -92791408 + L1PA3 LINE L1 13 6155 0 14069 188 31 3 chrX 69808520 69812637 -92787293 + L1PB1 LINE L1 2626 6865 -2 * 509 274 37 0 chrX 69813122 69813286 -92786644 + MIR SINE MIR 47 216 -46 240 297 44 33 chrX 69813790 69813881 -92786049 + L2 LINE L2 3218 3309 -4 271 291 47 23 chrX 69813907 69813993 -92785937 + MIR SINE MIR 19 106 -102 6208 108 10 25 chrX 69814890 69816523 -92783407 + L1PA15 LINE L1 4553 6165 0 21 0 0 0 chrX 69816628 69816649 -92783281 + AT_rich Low_complexity Low_complexity 1 21 0 183 100 0 0 chrX 69816659 69816689 -92783241 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 6721 32 3 0 chrX 69816689 69817465 -92782465 - L1PA5 LINE L1 -24 6130 5353 239 297 0 0 chrX 69817503 69817567 -92782363 - MIR SINE MIR -120 142 79 43031 53 7 0 chrX 69817698 69823762 -92776168 + L1PA4 LINE L1 45 6152 -3 1855 134 0 12 chrX 69823759 69824094 -92775836 + L1P4 LINE L1 5285 5615 -548 * 1543 283 38 2 chrX 69824113 69824640 -92775290 + L1PBa LINE L1 6 551 -6312 9677 217 16 8 chrX 69824713 69825322 -92774608 + L1PBa LINE L1 1736 2338 -4524 2838 16 0 0 chrX 69825322 69825635 -92774295 - AluYb8 SINE Alu -5 313 1 9677 217 16 8 chrX 69825635 69828340 -92771590 + L1PBa LINE L1 2338 5122 -1740 19050 110 27 35 chrX 69828351 69832470 -92767460 + L1PB1 LINE L1 5 4192 -2269 7773 114 2 0 chrX 69832468 69833172 -92766758 + L1PA7 LINE L1 1611 2319 -3827 * 207 0 0 0 chrX 69833172 69833195 -92766735 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7773 114 2 0 chrX 69833195 69833705 -92766225 + L1PA7 LINE L1 2319 2827 -3319 * 20129 49 18 2 chrX 69833704 69836441 -92763489 - L1P LINE L1 -2420 3726 948 7445 55 17 0 chrX 69836441 69838147 -92761783 + L1PA5 LINE L1 4432 6152 -2 17376 101 2 1 chrX 69838148 69841475 -92758455 + L1PA7 LINE L1 2816 6151 -3 5720 141 31 3 chrX 69841489 69842833 -92757097 + L1PB1 LINE L1 4716 6120 -346 753 114 0 0 chrX 69842833 69842947 -92756983 + (TA)n Simple_repeat Simple_repeat 2 115 0 5720 141 31 3 chrX 69842947 69843305 -92756625 + L1PB1 LINE L1 6120 6466 0 4073 79 9 2 chrX 69843344 69843903 -92756027 + L1PA13 LINE L1 5601 6163 0 404 336 17 0 chrX 69843904 69844023 -92755907 + MER5A DNA MER1_type 69 189 0 378 0 0 0 chrX 69845337 69845379 -92754551 + (TG)n Simple_repeat Simple_repeat 2 43 0 1834 149 3 10 chrX 69846284 69846573 -92753357 - AluJo SINE Alu -25 287 1 2160 117 67 65 chrX 69847279 69847759 -92752171 - L1MB8 LINE L1 -5 6173 5693 294 318 37 0 chrX 69848019 69848126 -92751804 + MIR SINE MIR 85 195 -67 228 260 48 125 chrX 69849529 69849633 -92750297 - MER5A DNA MER1_type -19 170 75 2222 146 3 3 chrX 69850210 69850580 -92749350 - L1PB1 LINE L1 0 6867 6498 14157 193 33 6 chrX 69850604 69854150 -92745780 - L1PB1 LINE L1 -762 6100 2222 216 0 0 0 chrX 69854150 69854174 -92745756 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 14157 193 33 6 chrX 69854174 69855804 -92744126 - L1PB1 LINE L1 -4640 2222 638 1072 280 36 7 chrX 69855849 69856260 -92743670 - L1PB1 LINE L1 -6312 551 129 25 51 0 0 chrX 69856387 69856426 -92743504 + AT_rich Low_complexity Low_complexity 1 39 0 512 127 200 61 chrX 69856749 69856914 -92743016 - MER53 DNA DNA -1 188 1 373 322 48 0 chrX 69857408 69857554 -92742376 + MIR SINE MIR 102 254 -8 192 135 0 0 chrX 69857845 69857882 -92742048 + (TAG)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chrX 69857922 69857944 -92741986 + AT_rich Low_complexity Low_complexity 1 22 0 5635 213 16 16 chrX 69858180 69859649 -92740281 + L1 LINE L1 2920 4389 -1757 515 155 0 24 chrX 69859668 69859752 -92740178 + FLAM SINE Alu 46 127 -16 5838 119 10 2 chrX 69859761 69861526 -92738404 + L1PA16 LINE L1 4376 6161 -5 26 50 0 0 chrX 69864790 69864830 -92735100 + AT_rich Low_complexity Low_complexity 1 40 0 215 300 0 122 chrX 69864893 69864983 -92734947 - L2 LINE L2 -43 3229 3151 25 31 0 0 chrX 69865701 69865733 -92734197 + AT_rich Low_complexity Low_complexity 1 32 0 1786 178 0 41 chrX 69868538 69868853 -92731077 - AluJo SINE Alu -10 302 1 539 191 65 12 chrX 69869502 69869670 -92730260 - MER113 DNA MER1_type? -343 178 2 1864 148 0 30 chrX 69871066 69871371 -92728559 + AluJb SINE Alu 1 296 -16 448 305 41 0 chrX 69872045 69872291 -92727639 + L1ME4a LINE L1 5641 5896 -225 386 195 49 16 chrX 69872469 69872592 -92727338 + L1ME4a LINE L1 5984 6110 -11 257 295 42 16 chrX 69873105 69873295 -92726635 - L1ME LINE L1 -238 5883 5689 723 189 30 0 chrX 69873470 69873602 -92726328 - AluJb SINE Alu -176 136 1 380 151 119 34 chrX 69876236 69876344 -92723586 - MER5A DNA MER1_type 0 189 14 2619 194 40 58 chrX 69876344 69877125 -92722805 - L1M4c LINE L1 -3093 3289 2522 2021 154 0 13 chrX 69877125 69877430 -92722500 - AluSx SINE Alu -11 301 1 2619 194 40 58 chrX 69877430 69877458 -92722472 - L1M4c LINE L1 -3860 2522 2495 1780 194 0 0 chrX 69877461 69877750 -92722180 - AluJo SINE Alu -23 289 1 341 233 178 0 chrX 69877793 69877920 -92722010 - FLAM_A SINE Alu -7 126 3 1066 224 131 10 chrX 69877920 69878331 -92721599 - L1M4c LINE L1 -4052 2511 2051 26244 104 7 14 chrX 69878397 69881718 -92718212 - L1PA8 LINE L1 -5 6482 3212 2103 78 0 21 chrX 69881718 69882000 -92717930 - AluY SINE Alu -4 307 32 26244 104 7 14 chrX 69882000 69883849 -92716081 - L1PA8 LINE L1 -3275 3212 1352 21 57 0 0 chrX 69883849 69883884 -92716046 + AT_rich Low_complexity Low_complexity 1 35 0 40288 53 4 0 chrX 69884083 69890219 -92709711 - L1PA4 LINE L1 0 6155 1 8254 132 23 1 chrX 69890223 69891547 -92708383 - L1PA8 LINE L1 -5102 1359 6 911 237 47 9 chrX 69891555 69891862 -92708068 - L1M4c LINE L1 -4573 1990 1519 300 164 198 26 chrX 69891861 69891977 -92707953 - L1M4c LINE L1 -3988 2396 2261 * 1390 223 67 41 chrX 69891987 69892377 -92707553 - MER68 LTR ERV1 0 562 163 5294 125 13 25 chrX 69892401 69892782 -92707148 - L1PB3 LINE L1 0 6211 5827 1393 166 78 53 chrX 69892782 69893066 -92706864 - AluJb SINE Alu -21 291 1 5294 125 13 25 chrX 69893066 69893754 -92706176 - L1PB3 LINE L1 -384 5827 5153 3419 118 8 6 chrX 69893755 69894265 -92705665 + MER9 LTR ERVK 1 511 0 3821 92 9 21 chrX 69894265 69894840 -92705090 + HERVK9 LTR ERVK 1 568 -5348 * 5696 73 1 0 chrX 69894838 69895590 -92704340 + HERVK9 LTR ERVK 1424 2176 -3740 318 49 0 0 chrX 69895588 69895629 -92704301 + HERVK9 LTR ERVK 3901 3941 -1975 * 225 0 0 0 chrX 69895706 69895731 -92704199 + (T)n Simple_repeat Simple_repeat 1 25 0 1030 166 48 0 chrX 69896283 69896470 -92703460 - L1PA16 LINE L1 -8 6158 5963 2299 103 0 0 chrX 69896679 69896969 -92702961 + AluSg SINE Alu 1 290 -20 6904 105 2 0 chrX 69898564 69899547 -92700383 + HERVK9 LTR ERVK 4650 5634 -282 2106 53 4 0 chrX 69899656 69899921 -92700009 + HERVK9 LTR ERVK 5651 5916 0 3357 102 24 6 chrX 69899922 69900423 -92699507 + MER9 LTR ERVK 2 511 0 11658 204 43 13 chrX 69900423 69904472 -92695458 - L1PB3 LINE L1 -1046 5157 988 6068 118 41 39 chrX 69904484 69906925 -92693005 - SVA Other Other -518 1386 3 5577 173 8 6 chrX 69906925 69907916 -92692014 - L1PB3 LINE L1 -5211 993 1 2025 264 18 30 chrX 69907887 69908594 -92691336 - L1PBa LINE L1 -5230 974 276 * 398 261 62 75 chrX 69908655 69908816 -92691114 - MER77 LTR ERV1 -446 159 1 23 33 0 0 chrX 69908865 69908895 -92691035 + AT_rich Low_complexity Low_complexity 1 30 0 1909 136 14 54 chrX 69909441 69909810 -92690120 - MLT1B LTR MaLR -32 358 5 334 187 53 0 chrX 69910020 69910095 -92689835 - L1MB8 LINE L1 -203 5975 5897 * 3655 207 45 8 chrX 69910089 69911027 -92688903 - L1MB8 LINE L1 -1144 5002 4030 1108 247 33 9 chrX 69911021 69911502 -92688428 - L1MEc LINE L1 -3737 2478 2022 * 1101 208 64 8 chrX 69911525 69911789 -92688141 - MER21B LTR ERV1 -11 852 574 3171 114 29 4 chrX 69911818 69912337 -92687593 - L1MA2 LINE L1 -3 6301 5770 * 6665 160 10 14 chrX 69912330 69913095 -92686835 - L1PA13 LINE L1 -4 6159 5393 2439 66 7 0 chrX 69913095 69913399 -92686531 - AluY SINE Alu -5 306 1 6665 160 10 14 chrX 69913399 69914682 -92685248 - L1PA13 LINE L1 -770 5393 4114 6851 184 18 39 chrX 69914693 69914742 -92685188 - L1PA13 LINE L1 -2018 4128 4080 4801 62 29 0 chrX 69914742 69915358 -92684572 - L1PA8 LINE L1 -13 6159 5526 6851 184 18 39 chrX 69915358 69916779 -92683151 - L1PA13 LINE L1 -2066 4080 2631 198 103 0 0 chrX 69916779 69916808 -92683122 + (TG)n Simple_repeat Simple_repeat 2 30 0 6851 184 18 39 chrX 69916808 69916849 -92683081 - L1PA13 LINE L1 -3515 2631 2591 441 0 0 0 chrX 69916849 69916898 -92683032 + (TG)n Simple_repeat Simple_repeat 2 50 0 6851 184 18 39 chrX 69916898 69917028 -92682902 - L1PA13 LINE L1 -3555 2591 2519 2231 113 54 25 chrX 69917029 69917383 -92682547 + THE1B LTR MaLR 1 364 0 11352 103 8 1 chrX 69917383 69918951 -92680979 + THE1B-int LTR MaLR 1 1580 0 387 17 85 34 chrX 69918951 69919010 -92680920 + THE1B LTR MaLR 1 62 -302 17421 101 11 1 chrX 69919020 69922403 -92677527 - L1PA7 LINE L1 -4 6801 3392 1909 177 13 29 chrX 69922404 69922856 -92677074 - L1PA7 LINE L1 -4736 2051 1607 7810 141 31 67 chrX 69922887 69923609 -92676321 - L1 LINE L1 -3249 4316 3570 1857 167 7 0 chrX 69923609 69923902 -92676028 - AluSx SINE Alu -17 295 1 7810 141 31 67 chrX 69923902 69925133 -92674797 - L1 LINE L1 -3995 3570 2439 1949 138 9 75 chrX 69925133 69925467 -92674463 - AluSx SINE Alu 0 312 1 7810 141 31 67 chrX 69925467 69925943 -92673987 - L1 LINE L1 -5126 2439 1948 6261 136 61 1 chrX 69925943 69927052 -92672878 - HSMAR2 DNA Mariner -124 1178 3 3013 219 96 28 chrX 69927054 69927698 -92672232 - L1M4 LINE L1 -1168 5789 5054 1464 174 52 39 chrX 69927698 69928003 -92671927 - AluJo SINE Alu -3 309 1 3013 219 96 28 chrX 69928003 69928336 -92671594 - L1M4 LINE L1 -1903 5054 4745 1697 267 28 18 chrX 69928336 69928838 -92671092 - L1M4 LINE L1 -6352 507 1 1768 244 91 49 chrX 69928840 69929643 -92670287 - L1MEc LINE L1 -5088 1308 472 2844 3 0 0 chrX 69930999 69931305 -92668625 + AluY SINE Alu 2 307 -4 3775 140 36 0 chrX 69932204 69932817 -92667113 + MER41B LTR ERV1 1 635 0 4735 136 36 9 chrX 69932817 69933604 -92666326 + MER41B-int LTR ERV1 1 808 -5138 3557 124 31 16 chrX 69933599 69934290 -92665640 + MER41B-int LTR ERV1 1187 1992 -3954 * 4385 146 54 9 chrX 69934293 69935109 -92664821 + MER41B-int LTR ERV1 2777 3629 -3908 3882 82 21 8 chrX 69935111 69935741 -92664189 + MER41B-int LTR ERV1 3308 3945 -2001 9254 99 25 4 chrX 69935781 69937208 -92662722 + MER41B-int LTR ERV1 4491 5946 0 3937 135 18 0 chrX 69937208 69937832 -92662098 + MER41B LTR ERV1 1 635 0 1490 76 25 0 chrX 69938320 69938518 -92661412 - L1PA13 LINE L1 -7 6156 5954 312 27 0 0 chrX 69939871 69939908 -92660022 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 288 30 0 chrX 69940465 69940531 -92659399 + MIR SINE MIR 79 146 -116 2463 94 0 0 chrX 69941085 69941393 -92658537 - AluSp SINE Alu -5 308 1 307 226 244 43 chrX 69943580 69943810 -92656120 + L1ME4a LINE L1 5798 6073 -48 244 400 64 8 chrX 69943866 69943991 -92655939 + MIR SINE MIR 20 151 -111 207 229 0 0 chrX 69943998 69944033 -92655897 + L2 LINE L2 3255 3289 -24 415 269 86 6 chrX 69944039 69944214 -92655716 + L1ME LINE L1 5550 5738 -383 2326 101 0 49 chrX 69944237 69944644 -92655286 - L1MA2 LINE L1 0 6304 5918 2475 42 3 13 chrX 69944644 69944956 -92654974 + L1PA7 LINE L1 5843 6152 -2 1447 245 60 41 chrX 69945060 69945220 -92654710 + L1ME1 LINE L1 5603 5759 -407 270 0 0 0 chrX 69945220 69945250 -92654680 + (TG)n Simple_repeat Simple_repeat 2 31 0 1447 245 60 41 chrX 69945250 69945623 -92654307 + L1ME1 LINE L1 5759 6146 -20 503 319 57 3 chrX 69945670 69945971 -92653959 - L1ME LINE L1 -502 5619 5303 5504 107 23 11 chrX 69945978 69947244 -92652686 - L1PA16 LINE L1 -9 6157 4873 246 209 101 8 chrX 69947248 69947377 -92652553 - L1ME LINE L1 -815 5331 5191 259 275 11 11 chrX 69947583 69947674 -92652256 - L1MC/D LINE L1 -391 5779 5697 2007 106 35 0 chrX 69947785 69948067 -92651863 + AluSx SINE Alu 1 292 -20 263 275 70 14 chrX 69948300 69948442 -92651488 - MER103 DNA DNA -9 157 8 762 282 37 5 chrX 69948702 69948918 -92651012 + MIR SINE MIR 10 232 -30 340 270 120 21 chrX 69951571 69951722 -92648208 + MIR3 SINE MIR 15 180 -61 189 289 62 10 chrX 69951854 69951951 -92647979 + L2 LINE L2 2150 2251 -1063 184 297 171 36 chrX 69952699 69952810 -92647120 + L2 LINE L2 3139 3264 -8 233 203 78 16 chrX 69953446 69953510 -92646420 - MIR SINE MIR -81 127 60 406 225 228 34 chrX 69953637 69953799 -92646131 + MIR SINE MIR 7 178 -62 214 211 0 0 chrX 69953798 69953836 -92646094 + L2 LINE L2 3265 3302 -11 * 2440 75 0 13 chrX 69954297 69954603 -92645327 - AluY SINE Alu -9 302 1 232 301 85 20 chrX 69955934 69956087 -92643843 + L2 LINE L2 2694 2856 -458 1903 147 7 10 chrX 69957046 69957338 -92642592 - AluJb SINE Alu -21 291 1 4399 201 43 20 chrX 69957582 69959357 -92640573 + L1MA4 LINE L1 587 2382 -3946 * 19229 148 25 2 chrX 69959351 69962630 -92637300 + L1MA3 LINE L1 19 3372 -4193 3303 85 21 0 chrX 69962631 69963066 -92636864 - MLT2A1 LTR ERVL 0 444 1 5960 65 1 9 chrX 69963066 69963870 -92636060 - HERVL-A1 LTR ERVL 0 5654 4857 3234 68 2 0 chrX 69963860 69964289 -92635641 - HERVL-A1 LTR ERVL -5224 430 1 * 3070 73 36 25 chrX 69964289 69964728 -92635202 - MLT2A1 LTR ERVL 0 444 1 2928 182 22 36 chrX 69964728 69965717 -92634213 + L1MA3 LINE L1 3369 4348 -3217 5613 156 58 2 chrX 69965718 69967606 -92632324 + L1MA3 LINE L1 5510 7534 -190 2286 109 0 0 chrX 69967606 69967900 -92632030 + AluSx SINE Alu 1 294 -18 5613 156 58 2 chrX 69967900 69968103 -92631827 + L1MA3 LINE L1 7534 7724 0 231 105 0 0 chrX 69968119 69968157 -92631773 + L1MA4 LINE L1 2356 2393 -3935 18943 151 18 7 chrX 69968162 69971573 -92628357 + L1PA14 LINE L1 1 3463 -4121 15107 173 8 4 chrX 69971817 69975955 -92623975 + L1PA14 LINE L1 3458 7596 -3 14216 165 26 49 chrX 69975954 69977540 -92622390 + L1MA4 LINE L1 2382 4002 -2480 * 7050 62 3 155 chrX 69977540 69978791 -92621139 + SVA Other Other 325 1385 -1 14216 165 26 49 chrX 69978791 69979771 -92620159 + L1MA4 LINE L1 4002 5002 -1480 1847 164 20 0 chrX 69979771 69980075 -92619855 + AluSx SINE Alu 1 310 -2 2365 87 3 0 chrX 69980084 69980382 -92619548 + AluY SINE Alu 9 307 -4 14216 165 26 49 chrX 69980382 69981777 -92618153 + L1MA4 LINE L1 5010 6297 -185 2340 71 0 14 chrX 69981777 69982073 -92617857 - AluY SINE Alu -19 292 1 14216 165 26 49 chrX 69982073 69982238 -92617692 + L1MA4 LINE L1 6297 6464 -18 5230 165 22 6 chrX 69982379 69982995 -92616935 + L1MA9 LINE L1 5186 5831 -481 2241 101 0 3 chrX 69982995 69983292 -92616638 - AluY SINE Alu -15 296 1 5230 165 22 6 chrX 69983292 69983744 -92616186 + L1MA9 LINE L1 5831 6274 -38 1686 94 9 0 chrX 69984020 69984244 -92615686 + AluSg/x SINE Alu 75 300 -12 201 39 0 0 chrX 69984255 69984281 -92615649 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 197 271 52 52 chrX 69984302 69984398 -92615532 + L3b LINE CR1 1137 1232 -351 2350 82 0 28 chrX 69984981 69985299 -92614631 - AluY SINE Alu -2 309 1 2112 110 0 27 chrX 69985335 69985635 -92614295 - AluSx SINE Alu -20 292 1 351 269 108 39 chrX 69985861 69985991 -92613939 + L3b LINE CR1 1386 1524 -59 256 266 18 64 chrX 69986145 69986254 -92613676 + MIR SINE MIR 88 191 -71 3950 98 16 0 chrX 69989119 69989690 -92610240 + L1PA7 LINE L1 4733 5312 -834 7570 31 1 0 chrX 69989690 69990674 -92609256 + L1PA4 LINE L1 5171 6155 0 6818 54 3 0 chrX 69990674 69991523 -92608407 + L1PA7 LINE L1 5293 6151 -3 304 261 45 45 chrX 69991596 69991707 -92608223 - L1ME4a LINE L1 -55 6066 5956 851 256 142 28 chrX 69991837 69991940 -92607990 - L1ME4a LINE L1 -223 5898 5808 421 40 66 0 chrX 69991940 69992016 -92607914 + (TA)n Simple_repeat Simple_repeat 1 81 0 851 256 142 28 chrX 69992016 69992272 -92607658 - L1ME4a LINE L1 -313 5808 5498 1861 14 0 0 chrX 69993370 69993582 -92606348 - L1PA3 LINE L1 -4 6151 5940 811 208 0 26 chrX 69993592 69993746 -92606184 - AluJo SINE Alu -30 282 133 2714 121 27 7 chrX 69993765 69994204 -92605726 - L1PA15 LINE L1 -9 6156 5709 786 153 0 83 chrX 69994204 69994361 -92605569 - AluJo SINE Alu -168 144 1 567 294 18 41 chrX 69997354 69997575 -92602355 + MIR SINE MIR 6 221 -41 28 48 0 0 chrX 69998215 69998257 -92601673 + AT_rich Low_complexity Low_complexity 1 42 0 882 138 42 0 chrX 70000985 70001152 -92598778 + L1MC3 LINE L1 6924 7097 -688 291 264 22 22 chrX 70001152 70001243 -92598687 + MLT1F1 LTR MaLR 35 125 -442 2975 152 48 16 chrX 70001248 70001813 -92598117 + L1MC3 LINE L1 7202 7784 -1 181 300 33 17 chrX 70002377 70002437 -92597493 + MIR SINE MIR 87 147 -115 429 301 21 14 chrX 70002518 70002661 -92597269 - MIR3 SINE MIR -6 202 59 309 89 0 0 chrX 70002747 70002792 -92597138 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 1013 300 61 39 chrX 70003107 70003261 -92596669 + L2 LINE L2 2562 2711 -603 1803 166 0 23 chrX 70003261 70003563 -92596367 + AluJo SINE Alu 6 300 -12 1013 300 61 39 chrX 70003563 70003815 -92596115 + L2 LINE L2 2711 2977 -337 12041 185 16 14 chrX 70003845 70004218 -92595712 - L1PB1 LINE L1 0 6151 5780 306 0 0 0 chrX 70004218 70004252 -92595678 + (TG)n Simple_repeat Simple_repeat 2 35 0 195 42 0 0 chrX 70004251 70004275 -92595655 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 12041 185 16 14 chrX 70004252 70007394 -92592536 - L1PB1 LINE L1 -371 5780 2652 2368 56 0 0 chrX 70007394 70007734 -92592196 - AluY SINE Alu 0 340 1 12041 185 16 14 chrX 70007734 70007810 -92592120 - L1PB1 LINE L1 -3499 2652 2578 36527 38 24 7 chrX 70007839 70013346 -92586584 - L1PA3 LINE L1 0 6155 555 4232 44 13 2 chrX 70013458 70014005 -92585925 - L1P2 LINE L1 -348 5806 5254 1941 37 0 0 chrX 70014001 70014243 -92585687 + L1P2 LINE L1 5015 5256 -890 * 842 161 81 0 chrX 70014243 70014417 -92585513 - MER33 DNA MER1_type -127 197 10 641 239 150 13 chrX 70014532 70014758 -92585172 + MIR SINE MIR 3 259 -3 298 300 126 7 chrX 70015095 70015257 -92584673 + MER5A DNA MER1_type 1 189 0 237 247 0 62 chrX 70015425 70015517 -92584413 + T-rich Low_complexity Low_complexity 1 87 0 207 0 0 0 chrX 70015517 70015540 -92584390 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7079 16 0 0 chrX 70015546 70016352 -92583578 - L1PA2 LINE L1 -13 6142 5337 4049 30 0 2 chrX 70016340 70016841 -92583089 + L1PA2 LINE L1 4846 5345 -801 * 1666 163 67 22 chrX 70016870 70017227 -92582703 + THE1C LTR MaLR 2 374 -1 3937 176 64 19 chrX 70017228 70018381 -92581549 + L1PBa LINE L1 2559 3761 -3101 409 81 54 14 chrX 70018714 70018788 -92581142 + L1P1 LINE L1 5552 5628 -527 4811 53 14 3 chrX 70018927 70019564 -92580366 - L1P LINE L1 -5502 644 1 241 65 0 43 chrX 70019623 70019669 -92580261 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 7580 53 5 2 chrX 70019669 70021402 -92578528 - L1PA3 LINE L1 -13 6142 4407 837 64 0 0 chrX 70021408 70021518 -92578412 - L1PA5 LINE L1 0 6154 6045 2912 48 0 0 chrX 70021519 70021871 -92578059 + L1P2 LINE L1 5422 5773 -381 * 18451 60 8 8 chrX 70021869 70024358 -92575572 - L1PA3 LINE L1 -1724 4422 1934 329 307 97 17 chrX 70024414 70024590 -92575340 - MIR SINE MIR -56 206 17 342 315 39 46 chrX 70024933 70025063 -92574867 + MIR SINE MIR 13 141 -121 241 279 52 29 chrX 70025517 70025653 -92574277 - L1MC4 LINE L1 -1 8041 7903 1918 202 66 25 chrX 70025759 70026244 -92573686 - L1ME2 LINE L1 -19 6145 5641 400 247 85 21 chrX 70026517 70026752 -92573178 + L1MC5 LINE L1 7609 7858 -103 246 247 86 54 chrX 70026796 70026889 -92573041 - L2 LINE L2 -232 3081 2986 1105 219 125 12 chrX 70026889 70026931 -92572999 - MLT2B2 LTR ERVL 0 515 479 477 0 0 0 chrX 70026931 70026984 -92572946 + (TG)n Simple_repeat Simple_repeat 2 54 0 1105 219 125 12 chrX 70026984 70027270 -92572660 - MLT2B2 LTR ERVL -36 479 150 23 33 0 0 chrX 70028130 70028160 -92571770 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 70028398 70028421 -92571509 + AT_rich Low_complexity Low_complexity 1 23 0 11648 93 11 5 chrX 70028421 70030895 -92569035 - L1PA7 LINE L1 -11 6143 3660 2276 120 0 7 chrX 70031815 70032123 -92567807 + AluSx SINE Alu 1 306 -6 417 144 133 18 chrX 70032123 70032259 -92567671 + L1MB7 LINE L1 5668 5830 -348 682 218 35 30 chrX 70032286 70032488 -92567442 + L1PBa LINE L1 957 1159 -5704 5524 240 36 17 chrX 70032510 70035249 -92564681 + L1PBa LINE L1 80 1926 -4937 13858 146 27 16 chrX 70035261 70037790 -92562140 + L1PBa LINE L1 3 2560 -4303 1745 157 58 28 chrX 70037790 70038154 -92561776 + THE1C LTR MaLR 1 375 0 3148 154 12 63 chrX 70038162 70038823 -92561107 + THE1C-int LTR MaLR 9 635 -945 733 171 14 0 chrX 70038815 70038955 -92560975 + THE1C-int LTR MaLR 1491 1632 -19 * 5175 19 0 0 chrX 70038965 70039554 -92560376 - L1PA3 LINE L1 0 6155 5567 2673 18 0 0 chrX 70039570 70039901 -92560029 + L1PA3 LINE L1 5254 5584 -571 * 16547 125 48 13 chrX 70039897 70041941 -92557989 - L1PBa LINE L1 -3553 3309 1339 2442 82 0 19 chrX 70041941 70042258 -92557672 - AluY SINE Alu 0 311 1 16547 125 48 13 chrX 70042258 70043298 -92556632 - L1PBa LINE L1 -5523 1339 108 2427 88 0 0 chrX 70043298 70043603 -92556327 - AluY SINE Alu -6 305 1 16547 125 48 13 chrX 70043603 70043713 -92556217 - L1PBa LINE L1 -6754 108 3 943 191 0 0 chrX 70043729 70043912 -92556018 + MLT2B1 LTR ERVL 3 185 -335 10401 42 0 1 chrX 70043912 70044385 -92555545 + L1PA5 LINE L1 4069 4541 -1613 2673 29 0 0 chrX 70044385 70044691 -92555239 + AluY SINE Alu 1 306 -5 10401 42 0 1 chrX 70044691 70046312 -92553618 + L1PA5 LINE L1 4541 6154 0 432 0 0 0 chrX 70046322 70046370 -92553560 + (TA)n Simple_repeat Simple_repeat 1 48 0 225 0 0 0 chrX 70046369 70046394 -92553536 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 893 238 28 109 chrX 70046484 70046879 -92553051 + MLT2B3 LTR ERVL 190 552 -2 3778 273 60 5 chrX 70046883 70048158 -92551772 + HERVL-B3 LTR ERVL 21 1365 -4289 * 6311 137 22 7 chrX 70048156 70048264 -92551666 + ERVL LTR ERVL 3945 4050 -1714 1724 188 43 6 chrX 70048264 70048616 -92551314 - MLT1A1 LTR MaLR 0 365 1 6311 137 22 7 chrX 70048616 70049541 -92550389 + ERVL LTR ERVL 4050 4994 -770 840 138 42 0 chrX 70050315 70050482 -92549448 + L1MC3 LINE L1 6924 7097 -688 260 264 22 22 chrX 70050482 70050573 -92549357 + MLT1F1 LTR MaLR 35 125 -442 2793 152 48 16 chrX 70050578 70051143 -92548787 + L1MC3 LINE L1 7202 7784 -1 430 301 21 14 chrX 70051848 70051991 -92547939 - MIR3 SINE MIR -6 202 59 309 89 0 0 chrX 70052077 70052122 -92547808 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 1021 300 61 39 chrX 70052437 70052591 -92547339 + L2 LINE L2 2562 2711 -603 1828 166 0 23 chrX 70052591 70052893 -92547037 + AluJo SINE Alu 6 300 -12 1021 300 61 39 chrX 70052893 70053145 -92546785 + L2 LINE L2 2711 2977 -337 11299 183 16 14 chrX 70053175 70053548 -92546382 - L1PB1 LINE L1 0 6867 6496 378 0 0 0 chrX 70053548 70053590 -92546340 + (TG)n Simple_repeat Simple_repeat 2 43 0 195 42 0 0 chrX 70053589 70053613 -92546317 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 11299 183 16 14 chrX 70053590 70056732 -92543198 - L1PB1 LINE L1 -371 6496 3368 2353 56 0 0 chrX 70056732 70057072 -92542858 - AluY SINE Alu 0 340 1 11299 183 16 14 chrX 70057072 70057148 -92542782 - L1PB1 LINE L1 -3499 3368 3294 5204 17 0 0 chrX 70057177 70057766 -92542164 - L1PA3 LINE L1 0 6155 5567 2673 18 0 0 chrX 70057782 70058113 -92541817 + L1PA3 LINE L1 5254 5584 -571 * 16547 125 48 13 chrX 70058109 70060153 -92539777 - L1PB1 LINE L1 -3553 3309 1339 2442 82 0 19 chrX 70060153 70060470 -92539460 - AluY SINE Alu 0 311 1 16547 125 48 13 chrX 70060470 70061510 -92538420 - L1PB1 LINE L1 -5523 1339 108 2446 86 0 0 chrX 70061510 70061814 -92538116 - AluY SINE Alu -7 304 1 16547 125 48 13 chrX 70061814 70061924 -92538006 - L1PB1 LINE L1 -6754 108 3 943 191 0 0 chrX 70061940 70062123 -92537807 + MLT2B1 LTR ERVL 3 185 -335 10427 42 0 0 chrX 70062123 70062596 -92537334 + L1PA5 LINE L1 4069 4541 -1613 2673 29 0 0 chrX 70062596 70062902 -92537028 + AluY SINE Alu 1 306 -5 10427 42 0 0 chrX 70062902 70064522 -92535408 + L1PA5 LINE L1 4540 6154 0 432 0 0 0 chrX 70064532 70064580 -92535350 + (TA)n Simple_repeat Simple_repeat 1 48 0 225 0 0 0 chrX 70064579 70064604 -92535326 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 893 238 28 109 chrX 70064694 70065089 -92534841 + MLT2B3 LTR ERVL 190 552 -2 3809 273 59 5 chrX 70065093 70066369 -92533561 + HERVL-B3 LTR ERVL 21 1365 -4289 * 6706 146 20 7 chrX 70066367 70066475 -92533455 + ERVL-B1 LTR ERVL 3945 4050 -1714 1724 188 43 6 chrX 70066475 70066827 -92533103 - MLT1A1 LTR MaLR 0 365 1 6706 146 20 7 chrX 70066827 70067845 -92532085 + ERVL-B1 LTR ERVL 4050 5086 -678 468 129 0 0 chrX 70067844 70067914 -92532016 - ERVL LTR ERVL -912 4852 4783 * 3972 131 29 17 chrX 70067966 70068661 -92531269 + ERVL-B1 LTR ERVL 5055 5757 -7 2079 192 114 19 chrX 70068661 70069093 -92530837 + MLT2B1 LTR ERVL 1 483 -37 477 0 0 0 chrX 70069093 70069146 -92530784 + (CA)n Simple_repeat Simple_repeat 2 54 0 2079 192 114 19 chrX 70069146 70069188 -92530742 + MLT2B1 LTR ERVL 483 520 0 246 247 86 54 chrX 70069188 70069281 -92530649 + L2 LINE L2 2986 3081 -232 400 247 85 21 chrX 70069325 70069560 -92530370 - L1MC5 LINE L1 -103 7858 7609 1784 202 66 25 chrX 70069833 70070318 -92529612 + L1ME2 LINE L1 5641 6145 -19 344 290 48 28 chrX 70070415 70070560 -92529370 + L1MC4 LINE L1 7894 8041 -1 339 315 39 46 chrX 70071014 70071144 -92528786 - MIR SINE MIR -121 141 13 320 307 97 17 chrX 70071487 70071663 -92528267 + MIR SINE MIR 17 206 -56 17603 60 8 8 chrX 70071719 70074208 -92525722 + L1PA6 LINE L1 1934 4422 -1724 2780 45 0 0 chrX 70074206 70074558 -92525372 - L1P2 LINE L1 -381 5773 5422 * 834 64 0 0 chrX 70074559 70074669 -92525261 + L1PA5 LINE L1 6045 6154 0 7613 52 17 2 chrX 70074675 70076409 -92523521 + L1PA6 LINE L1 4407 6154 0 1337 86 0 0 chrX 70076409 70076595 -92523335 + L1P3 LINE L1 5461 5646 -526 560 304 112 36 chrX 70076723 70076947 -92522983 + MIR SINE MIR 17 257 -5 825 190 50 39 chrX 70077000 70077362 -92522568 - L1MC/D LINE L1 -722 5452 5163 541 230 16 8 chrX 70077366 70077492 -92522438 + L1ME3 LINE L1 5539 5665 -505 336 24 0 0 chrX 70077532 70077573 -92522357 + (CA)n Simple_repeat Simple_repeat 2 42 0 267 206 48 16 chrX 70077590 70077653 -92522277 - MER2 DNA MER2_type -1 344 280 1213 176 15 0 chrX 70077688 70077893 -92522037 - MER2 DNA MER2_type -136 209 2 1411 231 68 16 chrX 70077904 70078370 -92521560 + L1ME3 LINE L1 5676 6161 -9 22 94 0 0 chrX 70078380 70078444 -92521486 + AT_rich Low_complexity Low_complexity 1 64 0 324 279 54 0 chrX 70078532 70078643 -92521287 + MER20B DNA MER1_type 36 152 -631 22328 186 24 36 chrX 70078686 70079762 -92520168 + L1PA11 LINE L1 1 1088 -6524 2264 112 3 0 chrX 70079762 70080066 -92519864 - AluSp SINE Alu -8 305 1 22328 186 24 36 chrX 70080066 70083344 -92516586 + L1PA11 LINE L1 1088 5064 -2548 6851 46 30 0 chrX 70083344 70083467 -92516463 + L1PA5 LINE L1 5164 5282 -872 279 0 0 0 chrX 70083467 70083498 -92516432 + (CAA)n Simple_repeat Simple_repeat 3 33 0 6851 46 30 0 chrX 70083498 70084339 -92515591 + L1PA5 LINE L1 5282 6154 0 22328 186 24 36 chrX 70084339 70086379 -92513551 + L1PA11 LINE L1 5064 7127 -485 506 88 0 0 chrX 70086380 70086448 -92513482 + THE1C LTR MaLR 252 319 -56 207 0 0 0 chrX 70086449 70086472 -92513458 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3436 103 16 0 chrX 70086472 70086959 -92512971 + L1PA11 LINE L1 7118 7612 0 4318 175 24 34 chrX 70087630 70087933 -92511997 - L1MB5 LINE L1 -8 6166 5861 2319 86 7 3 chrX 70087933 70088235 -92511695 - AluSp SINE Alu -10 303 1 4318 175 24 34 chrX 70088235 70089129 -92510801 - L1MB5 LINE L1 -313 5861 4984 3916 152 37 26 chrX 70089151 70089909 -92510021 - L1MB3 LINE L1 -44 6375 5610 2568 99 32 5 chrX 70089909 70090284 -92509646 + MLT2A1 LTR ERVL 1 385 -59 660 61 0 0 chrX 70090290 70090372 -92509558 + HERVL-A1 LTR ERVL 209 290 -5364 * 24861 76 11 2 chrX 70090369 70093573 -92506357 + HERVL-A1 LTR ERVL 1851 5085 -569 2743 75 16 0 chrX 70093568 70093941 -92505989 + HERVL-A1 LTR ERVL 5276 5654 0 * 2909 88 18 5 chrX 70093941 70094340 -92505590 + MLT2A1 LTR ERVL 1 404 -40 225 0 0 0 chrX 70094340 70094365 -92505565 + (CA)n Simple_repeat Simple_repeat 2 26 0 344 109 0 120 chrX 70094407 70094465 -92505465 + MLT2A1 LTR ERVL 360 405 -39 333 0 0 0 chrX 70094465 70094502 -92505428 + (CA)n Simple_repeat Simple_repeat 2 38 0 344 109 0 120 chrX 70094502 70094535 -92505395 + MLT2A1 LTR ERVL 405 440 -4 237 224 86 0 chrX 70094543 70094601 -92505329 - L1MB3 LINE L1 -800 5610 5548 * 253 191 0 44 chrX 70094574 70094642 -92505288 + L1PA16 LINE L1 6093 6157 -9 2355 42 3 11 chrX 70094667 70094987 -92504943 + AluY SINE Alu 1 318 0 3970 235 40 15 chrX 70094989 70096128 -92503802 - L1MB3 LINE L1 -848 5534 4368 1213 256 25 0 chrX 70096129 70096492 -92503438 - L1MB3 LINE L1 -2520 3862 3491 254 161 0 18 chrX 70096492 70096548 -92503382 + CT-rich Low_complexity Low_complexity 4 58 0 313 186 58 0 chrX 70096583 70096669 -92503261 + CT-rich Low_complexity Low_complexity 5 95 0 3291 239 49 12 chrX 70096671 70097873 -92502057 - L1MB3 LINE L1 -2884 3498 2256 1582 194 14 0 chrX 70098289 70098568 -92501362 - AluJo SINE Alu -27 285 3 239 327 131 33 chrX 70099240 70099393 -92500537 - MIR SINE MIR -54 208 41 1968 169 6 8 chrX 70099409 70099765 -92500165 - L1PB4 LINE L1 -8 6148 5794 21 95 0 0 chrX 70100316 70100379 -92499551 + AT_rich Low_complexity Low_complexity 1 63 0 254 197 0 33 chrX 70100536 70100597 -92499333 - L1MC4a LINE L1 -1879 5929 5871 770 274 50 8 chrX 70100605 70100864 -92499066 - L1MC4a LINE L1 -2027 5781 5512 715 245 16 32 chrX 70101505 70101683 -92498247 - MIR3 SINE MIR -18 190 16 251 316 0 0 chrX 70101683 70101740 -92498190 - MER5A DNA MER1_type 0 189 133 1127 137 33 0 chrX 70101995 70102177 -92497753 + L1PA16 LINE L1 5970 6157 -9 273 268 49 12 chrX 70102753 70102835 -92497095 + MIR SINE MIR 26 110 -152 230 156 0 0 chrX 70102881 70102926 -92497004 - LTR66 LTR ERVL -172 438 394 402 147 0 0 chrX 70102926 70102994 -92496936 + (TA)n Simple_repeat Simple_repeat 2 69 0 1326 207 113 0 chrX 70103206 70103472 -92496458 + AluJo SINE Alu 1 296 -6 195 69 0 0 chrX 70103714 70103743 -92496187 + (CA)n Simple_repeat Simple_repeat 2 30 0 778 340 19 8 chrX 70103926 70104188 -92495742 - L3 LINE CR1 -7 1570 1306 3198 230 43 30 chrX 70104218 70105114 -92494816 + L1ME1 LINE L1 5254 6161 -5 16393 130 24 10 chrX 70105807 70108509 -92491421 + L1PB1 LINE L1 1 2740 -4123 13914 73 6 2 chrX 70108512 70110353 -92489577 + L1PA4 LINE L1 11 1858 -4288 3320 36 7 0 chrX 70110344 70110760 -92489170 - L1P LINE L1 -1455 4691 4273 * 6468 32 1 0 chrX 70110760 70111527 -92488403 + L1PA3 LINE L1 5383 6152 -3 28075 47 4 0 chrX 70111538 70115836 -92484094 + L1PA4 LINE L1 1843 6155 0 13626 187 19 9 chrX 70115826 70117825 -92482105 + L1PB1 LINE L1 2782 4759 -2121 * 2318 90 3 0 chrX 70117825 70118124 -92481806 - AluSp SINE Alu -13 300 1 13626 187 19 9 chrX 70118124 70120182 -92479748 + L1PB1 LINE L1 4759 6880 0 394 289 74 26 chrX 70120183 70120373 -92479557 + L1ME4a LINE L1 5764 5962 -159 42 20 0 0 chrX 70120614 70120663 -92479267 + AT_rich Low_complexity Low_complexity 1 49 0 5612 112 20 51 chrX 70120855 70121885 -92478045 - L1PA14 LINE L1 -3 6158 5118 2257 154 26 5 chrX 70121936 70122318 -92477612 - MLT1B LTR MaLR 0 390 1 1507 113 17 0 chrX 70122798 70123038 -92476892 + L1MA3 LINE L1 6062 6305 0 221 326 52 44 chrX 70123100 70123235 -92476695 + MIR3 SINE MIR 30 165 -43 620 267 134 13 chrX 70123343 70123575 -92476355 - MIR SINE MIR -1 261 2 1910 204 44 20 chrX 70123615 70124066 -92475864 - MLT1C LTR MaLR 0 467 6 34 0 0 0 chrX 70124617 70124651 -92475279 + AT_rich Low_complexity Low_complexity 1 34 0 731 287 94 0 chrX 70124770 70124972 -92474958 - MIR SINE MIR -41 221 1 221 132 0 19 chrX 70125753 70125806 -92474124 + (GA)n Simple_repeat Simple_repeat 1 52 0 686 34 0 0 chrX 70126086 70126174 -92473756 - L1PA4 LINE L1 0 6155 6068 226 222 97 42 chrX 70126226 70126298 -92473632 - LTR48 LTR ERV1 -642 145 70 526 299 163 28 chrX 70126942 70127230 -92472700 + L3 LINE CR1 1242 1568 -9 513 152 97 21 chrX 70127897 70128042 -92471888 - MER33 DNA MER1_type 0 363 208 7019 43 1 2 chrX 70128042 70128939 -92470991 - L1PA5 LINE L1 -5 6149 5254 1858 37 0 0 chrX 70128935 70129177 -92470753 + L1PA5 LINE L1 5015 5256 -890 * 789 161 81 0 chrX 70129177 70129351 -92470579 - MER33 DNA MER1_type -127 197 10 631 239 150 13 chrX 70129466 70129692 -92470238 + MIR SINE MIR 3 259 -3 296 300 126 7 chrX 70130029 70130191 -92469739 + MER5A DNA MER1_type 1 189 0 237 247 0 62 chrX 70130359 70130451 -92469479 + T-rich Low_complexity Low_complexity 1 87 0 207 0 0 0 chrX 70130451 70130474 -92469456 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7840 12 0 0 chrX 70130480 70131553 -92468377 - L1PA2 LINE L1 -13 6142 5070 12982 21 1 0 chrX 70131553 70133136 -92466794 + L1PA2 LINE L1 3514 5097 -1049 423 320 18 14 chrX 70133244 70133463 -92466467 + L1MB5 LINE L1 44 263 -6279 1755 234 48 29 chrX 70133522 70134302 -92465628 + L1MB5 LINE L1 1509 2397 -4249 2167 154 37 0 chrX 70134316 70134698 -92465232 + L1P LINE L1 11 406 -5740 16832 54 0 0 chrX 70134698 70137639 -92462291 + L1PA4 LINE L1 3221 6152 -3 362 230 0 10 chrX 70137653 70137753 -92462177 + L1MB5 LINE L1 5453 5551 -1093 868 146 0 0 chrX 70137753 70137883 -92462047 + FLAM_A SINE Alu 13 142 0 198 0 0 0 chrX 70137907 70137929 -92462001 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 4201 181 35 26 chrX 70137931 70138661 -92461269 + L1MB5 LINE L1 5540 6262 -410 342 0 0 0 chrX 70138661 70138699 -92461231 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 369 0 0 0 chrX 70138698 70138739 -92461191 + (CA)n Simple_repeat Simple_repeat 2 42 0 4201 181 35 26 chrX 70138699 70139110 -92460820 + L1MB5 LINE L1 6262 6664 -8 211 338 0 0 chrX 70139210 70139287 -92460643 - MIR SINE MIR -13 249 173 195 321 0 18 chrX 70139283 70139339 -92460591 + L2 LINE L2 3217 3271 -1 * 333 263 12 0 chrX 70139356 70139436 -92460494 - MIR SINE MIR -70 138 58 322 289 61 35 chrX 70139593 70139707 -92460223 + MIR SINE MIR 20 136 -126 386 297 8 8 chrX 70139778 70139896 -92460034 - Charlie8 DNA MER1_type -2299 118 1 632 274 104 5 chrX 70139899 70140100 -92459830 + MIR SINE MIR 15 235 -27 701 182 0 73 chrX 70140233 70140398 -92459532 + MIR SINE MIR 109 261 -1 208 246 18 0 chrX 70143312 70143369 -92456561 + CT-rich Low_complexity Low_complexity 2 59 0 402 21 0 0 chrX 70143388 70143435 -92456495 + (CA)n Simple_repeat Simple_repeat 2 48 0 219 290 93 9 chrX 70143472 70143579 -92456351 - L3 LINE CR1 -39 1538 1423 424 340 103 17 chrX 70143641 70144083 -92455847 - L2 LINE L2 -188 3084 2608 246 307 25 110 chrX 70144693 70144856 -92455074 - L2 LINE L2 -252 3020 2872 * 473 332 55 31 chrX 70144853 70145142 -92454788 - L2 LINE L2 -686 2628 2333 645 210 99 6 chrX 70145283 70145445 -92454485 + MER58A DNA MER1_type 1 177 -47 6431 192 18 27 chrX 70145461 70146893 -92453037 - L1MC1 LINE L1 0 6333 4889 1947 115 0 0 chrX 70146893 70147146 -92452784 + AluSx SINE Alu 29 281 -31 321 26 0 0 chrX 70147149 70147187 -92452743 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6431 192 18 27 chrX 70147187 70148681 -92451249 - L1MC1 LINE L1 -1446 4887 3437 22 0 0 0 chrX 70148682 70148704 -92451226 + AT_rich Low_complexity Low_complexity 1 22 0 3001 126 0 41 chrX 70148718 70149210 -92450720 - L1PB3 LINE L1 -7 6147 5676 188 83 0 28 chrX 70149212 70149248 -92450682 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2642 73 0 4 chrX 70149248 70149753 -92450177 - L1PA4 LINE L1 -24 6131 5508 * 7454 232 69 25 chrX 70149734 70151611 -92448319 - L1 LINE L1 -1606 4540 2747 2473 62 0 16 chrX 70151611 70151918 -92448012 - AluY SINE Alu -9 302 1 7454 232 69 25 chrX 70151918 70152258 -92447672 - L1 LINE L1 -3399 2747 2423 1457 95 0 0 chrX 70152258 70152437 -92447493 - AluSc SINE Alu -20 289 111 7454 232 69 25 chrX 70152437 70152946 -92446984 - L1 LINE L1 -3723 2423 1704 1229 195 73 0 chrX 70152932 70153276 -92446654 - L1PBa LINE L1 -4578 2285 1917 * 425 319 129 0 chrX 70153428 70153660 -92446270 - L1M4 LINE L1 -524 5650 5389 2256 101 0 23 chrX 70153667 70153974 -92445956 - AluSx SINE Alu -12 300 1 234 128 0 0 chrX 70153978 70154017 -92445913 + (T)n Simple_repeat Simple_repeat 1 39 0 5668 123 16 2 chrX 70154239 70154594 -92445336 - L1PB1 LINE L1 -1 6150 5801 189 74 0 0 chrX 70154594 70154621 -92445309 + (TA)n Simple_repeat Simple_repeat 1 27 0 5668 123 16 2 chrX 70154621 70155365 -92444565 - L1PB1 LINE L1 -350 5801 5034 297 0 0 0 chrX 70155815 70155848 -92444082 + (TG)n Simple_repeat Simple_repeat 2 34 0 1834 150 14 0 chrX 70155848 70156128 -92443802 - AluSx SINE Alu -28 284 1 5670 33 1 0 chrX 70156194 70156864 -92443066 - L1PA4 LINE L1 -6 6149 5479 5332 15 0 0 chrX 70157691 70158295 -92441635 - L1PA3 LINE L1 0 6155 5552 3681 223 20 30 chrX 70158628 70159781 -92440149 - L1 LINE L1 -3101 3045 1903 1667 163 67 22 chrX 70159782 70160139 -92439791 - THE1C LTR MaLR -1 374 2 3873 26 0 2 chrX 70160168 70160664 -92439266 - L1PA3 LINE L1 -801 5345 4851 7175 16 0 0 chrX 70160664 70161476 -92438454 + L1PA3 LINE L1 5337 6155 0 733 171 14 0 chrX 70161486 70161626 -92438304 - THE1C-int LTR MaLR -19 1632 1491 * 3148 154 12 63 chrX 70161618 70162279 -92437651 - THE1C-int LTR MaLR -945 635 9 1745 157 58 28 chrX 70162287 70162651 -92437279 - THE1C LTR MaLR 0 375 1 13899 146 27 16 chrX 70162651 70165180 -92434750 - L1PBa LINE L1 -4303 2560 3 5524 241 37 17 chrX 70165192 70167931 -92431999 - L1PBa LINE L1 -4937 1926 80 682 218 35 30 chrX 70167953 70168155 -92431775 - L1PBa LINE L1 -5704 1159 957 417 144 133 18 chrX 70168182 70168318 -92431612 - L1MB7 LINE L1 -348 5830 5668 2276 120 0 7 chrX 70168318 70168626 -92431304 - AluSx SINE Alu -6 306 1 11773 90 3 2 chrX 70169546 70172019 -92427911 + L1PA7 LINE L1 3660 6143 -11 23 0 0 0 chrX 70172019 70172042 -92427888 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chrX 70172280 70172310 -92427620 + AT_rich Low_complexity Low_complexity 1 30 0 3241 169 49 88 chrX 70173283 70175021 -92424909 - L1MA9 LINE L1 -199 7134 5472 29 0 0 0 chrX 70175021 70175050 -92424880 + AT_rich Low_complexity Low_complexity 1 29 0 27862 37 15 1 chrX 70175051 70181070 -92418860 - L1PA2 LINE L1 -2 6153 1 241 65 0 43 chrX 70181129 70181175 -92418755 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 38683 51 21 2 chrX 70181175 70187195 -92412735 - L1PA3 LINE L1 -13 6142 1 703 244 37 26 chrX 70187249 70187520 -92412410 - L1MA9 LINE L1 -3697 3470 3197 704 247 21 25 chrX 70187539 70187778 -92412152 - L1MA9 LINE L1 -5070 2098 1861 604 305 55 21 chrX 70187949 70188381 -92411549 - L1MA9 LINE L1 -5852 1246 3 1229 234 7 10 chrX 70188386 70188993 -92410937 - L1MCa LINE L1 -3576 2850 2244 301 233 14 0 chrX 70188996 70189069 -92410861 - L1MCa LINE L1 -6322 104 31 2063 79 0 15 chrX 70189359 70189625 -92410305 + AluY SINE Alu 41 302 -9 363 179 39 39 chrX 70190853 70190931 -92408999 + L2 LINE L2 3236 3313 0 349 267 0 0 chrX 70191100 70191175 -92408755 - MER68 LTR ERV1 0 562 488 23 33 0 0 chrX 70191175 70191205 -92408725 + AT_rich Low_complexity Low_complexity 1 30 0 231 188 0 0 chrX 70191221 70191269 -92408661 + (TA)n Simple_repeat Simple_repeat 1 48 0 14323 166 88 43 chrX 70191269 70191869 -92408061 - L1MA1 LINE L1 -27 7694 7123 7192 53 26 0 chrX 70191869 70192743 -92407187 + MER11D LTR ERVK 1 897 0 14323 166 88 43 chrX 70192743 70196610 -92403320 - L1MA1 LINE L1 -598 7123 3432 181 0 69 0 chrX 70196610 70196639 -92403291 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2191 28 0 0 chrX 70196639 70196894 -92403036 - L1PA2 LINE L1 -18 6137 5883 14323 166 88 43 chrX 70196894 70199757 -92400173 - L1MA1 LINE L1 -4288 3433 25 1559 249 35 29 chrX 70199759 70200245 -92399685 - MER68 LTR ERV1 -65 497 9 850 126 8 137 chrX 70201146 70201401 -92398529 + L1MB8 LINE L1 5952 6173 -5 1641 181 31 3 chrX 70201410 70201763 -92398167 - L1MC/D LINE L1 -2192 5616 5254 204 125 0 0 chrX 70202379 70202411 -92397519 + (TTA)n Simple_repeat Simple_repeat 2 33 0 488 186 0 0 chrX 70202448 70202545 -92397385 + L1ME1 LINE L1 5575 5671 -571 2312 102 0 13 chrX 70205492 70205807 -92394123 - AluY SINE Alu 0 311 1 23 33 0 0 chrX 70206009 70206039 -92393891 + AT_rich Low_complexity Low_complexity 1 30 0 39240 44 28 1 chrX 70206420 70212404 -92387526 + L1PA3 LINE L1 8 6151 -4 644 181 31 0 chrX 70212545 70212672 -92387258 - MER20 DNA MER1_type -1 218 88 1771 211 23 12 chrX 70212982 70213409 -92386521 + MLT1C LTR MaLR 36 467 0 180 0 0 0 chrX 70214013 70214033 -92385897 + (A)n Simple_repeat Simple_repeat 1 20 0 1450 273 17 8 chrX 70215204 70215673 -92384257 + L1ME1 LINE L1 5644 6116 -50 30 45 0 0 chrX 70215690 70215734 -92384196 + AT_rich Low_complexity Low_complexity 1 44 0 254 217 0 0 chrX 70216353 70216399 -92383531 - MIR SINE MIR 0 262 217 39545 59 5 0 chrX 70216400 70222512 -92377418 - L1PA4 LINE L1 -4 6151 12 521 333 67 9 chrX 70222515 70222725 -92377205 - MIR SINE MIR -38 224 3 1023 232 9 0 chrX 70223209 70223420 -92376510 + MER58A DNA MER1_type 12 224 0 297 135 0 0 chrX 70223658 70223710 -92376220 + (TG)n Simple_repeat Simple_repeat 2 53 0 363 178 0 0 chrX 70225076 70225149 -92374781 - L1MB1 LINE L1 -24 6144 6072 221 316 43 43 chrX 70225240 70225379 -92374551 + MIR3 SINE MIR 67 205 -3 459 227 244 0 chrX 70225623 70225795 -92374135 + MIR SINE MIR 23 236 -26 227 291 0 0 chrX 70226076 70226131 -92373799 + L2 LINE L2 3246 3300 -13 300 216 34 34 chrX 70226131 70226219 -92373711 + L1MC4 LINE L1 6616 6703 -1339 201 83 0 62 chrX 70226221 70226269 -92373661 + (TA)n Simple_repeat Simple_repeat 2 46 0 190 345 0 0 chrX 70226399 70226457 -92373473 - L2 LINE L2 -680 2634 2577 318 371 11 34 chrX 70228736 70228914 -92371016 - L2 LINE L2 -181 3091 2918 416 329 84 7 chrX 70229620 70229794 -92370136 + MIR3 SINE MIR 20 204 -4 1666 123 8 0 chrX 70230294 70230546 -92369384 + L1MA7 LINE L1 5803 6056 -235 202 273 109 88 chrX 70231408 70231646 -92368284 + L2 LINE L2 2919 3161 -152 7980 74 14 0 chrX 70232341 70234159 -92365771 - L1PA7 LINE L1 -23 6131 4292 9798 123 8 8 chrX 70234161 70235701 -92364229 + L1P LINE L1 2617 4156 -1990 731 149 0 0 chrX 70235960 70236067 -92363863 + FLAM_C SINE Alu 1 107 -36 305 61 0 41 chrX 70236082 70236131 -92363799 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1868 99 38 0 chrX 70236142 70236405 -92363525 + AluSq SINE Alu 1 273 -40 4411 260 41 34 chrX 70236506 70238083 -92361847 + L1PA13 LINE L1 378 1942 -4855 2230 165 37 0 chrX 70238083 70238434 -92361496 - THE1B LTR MaLR 0 364 1 11270 113 21 3 chrX 70238434 70239986 -92359944 - THE1B-int LTR MaLR 0 1580 1 2319 167 28 3 chrX 70239988 70240341 -92359589 - THE1B LTR MaLR -2 362 1 4411 260 41 34 chrX 70240341 70240673 -92359257 + L1PA13 LINE L1 1942 2270 -4527 1746 133 23 0 chrX 70240673 70240929 -92359001 + AluSx SINE Alu 35 296 -16 1694 61 0 0 chrX 70240929 70241158 -92358772 + L1PA5 LINE L1 5939 6167 0 2252 111 0 0 chrX 70241159 70241456 -92358474 + AluSg SINE Alu 1 297 -13 4411 260 41 34 chrX 70241456 70242333 -92357597 + L1PA13 LINE L1 2269 3694 -3103 1812 166 82 56 chrX 70242433 70243045 -92356885 - HERVH LTR ERV1 -6765 948 1 1568 169 80 78 chrX 70243045 70243494 -92356436 - LTR7 LTR ERV1 0 450 1 1534 224 91 17 chrX 70243495 70244845 -92355085 - L1PBa LINE L1 -5230 1633 23 2110 192 57 10 chrX 70244864 70245265 -92354665 - MSTA LTR MaLR -8 420 1 813 126 35 0 chrX 70245970 70246113 -92353817 - L1MA2 LINE L1 -107 6197 6050 1537 259 57 4 chrX 70246555 70247085 -92352845 + L1M4 LINE L1 4298 4855 -1291 7127 84 9 0 chrX 70247085 70248381 -92351549 - L1PA8 LINE L1 -7 6165 4866 3194 108 53 19 chrX 70248381 70248855 -92351075 - LTR2B LTR ERV1 0 490 1 16571 91 5 23 chrX 70248855 70251153 -92348777 - Harlequin LTR ERV1 0 6896 4639 2030 231 7 14 chrX 70251269 70251684 -92348246 + L1PA12 LINE L1 610 1021 -6560 7840 35 0 0 chrX 70251685 70252814 -92347116 - L1PA3 LINE L1 0 6155 5027 10017 33 7 0 chrX 70252814 70253999 -92345931 + L1PA3 LINE L1 3815 5007 -1139 3794 257 18 17 chrX 70253997 70255669 -92344261 + L1PA12 LINE L1 1006 3471 -4113 * 10562 191 18 9 chrX 70255692 70257105 -92342825 + L1P LINE L1 4648 6089 -1495 1951 147 3 0 chrX 70257105 70257398 -92342532 + AluSq SINE Alu 5 298 -15 10562 191 18 9 chrX 70257398 70258102 -92341828 + L1P LINE L1 6089 6785 -799 4897 64 22 2 chrX 70258102 70259113 -92340817 + MER11A LTR ERVK 1 1266 0 6030 231 69 8 chrX 70259117 70259255 -92340675 - L1 LINE L1 -1594 5268 5140 183 42 0 0 chrX 70259255 70259279 -92340651 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6030 231 69 8 chrX 70259279 70260843 -92339087 - L1 LINE L1 -1722 5140 3462 27 0 0 0 chrX 70260848 70260875 -92339055 + AT_rich Low_complexity Low_complexity 1 27 0 7555 39 2 0 chrX 70260878 70261774 -92338156 - L1PA4 LINE L1 -4 6151 5254 1876 51 0 0 chrX 70261780 70262017 -92337913 + L1PA4 LINE L1 5014 5250 -896 * 2947 168 132 2 chrX 70262013 70264201 -92335729 - L1PBa LINE L1 -3385 3477 815 1722 77 9 5 chrX 70264306 70264528 -92335402 + L1P LINE L1 4058 4280 -1866 1806 186 18 13 chrX 70264539 70264993 -92334937 + L1MD1 LINE L1 5167 5621 -621 43098 59 3 1 chrX 70264993 70271130 -92328800 + L1PA4 LINE L1 1 6151 -4 2862 183 49 23 chrX 70271128 70271745 -92328185 + L1MD1 LINE L1 5609 6241 -1 * 240 234 21 0 chrX 70271954 70272001 -92327929 + Tigger5 DNA MER2_type 1 48 -2275 264 271 0 0 chrX 70272001 70272071 -92327859 - Tigger5 DNA MER2_type 0 2323 2254 2610 110 42 5 chrX 70272391 70272774 -92327156 - MSTA LTR MaLR 0 428 32 226 138 0 46 chrX 70274588 70274653 -92325277 + (TTTTG)n Simple_repeat Simple_repeat 4 65 0 14676 200 24 9 chrX 70274669 70277841 -92322089 - L1PB1 LINE L1 -2 6865 3581 2351 82 3 28 chrX 70277841 70278159 -92321771 - AluY SINE Alu -1 310 1 14676 200 24 9 chrX 70278159 70280140 -92319790 - L1PB1 LINE L1 -3286 3581 1631 1503 202 41 75 chrX 70280141 70280607 -92319323 - LTR7 LTR ERV1 0 450 1 28 61 0 0 chrX 70280615 70280664 -92319266 + AT_rich Low_complexity Low_complexity 1 49 0 5196 205 8 2 chrX 70280780 70281840 -92318090 - HERVH LTR ERV1 -159 7554 6489 2900 171 20 3 chrX 70281840 70282401 -92317529 - HERVH LTR ERV1 -2870 4115 3954 1155 123 5 0 chrX 70282432 70282619 -92317311 - HERVH LTR ERV1 -3720 3993 3806 * 5036 130 12 18 chrX 70282613 70283523 -92316407 - HERVH LTR ERV1 -4126 3587 2683 4978 121 34 24 chrX 70283624 70284804 -92315126 - HERVH LTR ERV1 -4304 2592 1401 3549 113 5 9 chrX 70284814 70285370 -92314560 - HERVH LTR ERV1 -6342 554 1 3044 126 31 17 chrX 70285370 70285853 -92314077 - LTR2B LTR ERV1 0 490 1 9731 180 25 114 chrX 70285885 70289139 -92310791 - L1P LINE L1 -3183 2963 2 2903 233 54 5 chrX 70289139 70290375 -92309555 + L1MD2 LINE L1 4845 6137 -222 22 0 0 0 chrX 70290386 70290408 -92309522 + AT_rich Low_complexity Low_complexity 1 22 0 593 299 4 11 chrX 70291431 70291621 -92308309 - MER5B DNA MER1_type 0 178 1 601 325 28 5 chrX 70292535 70292747 -92307183 + MIR SINE MIR 2 218 -44 802 285 78 8 chrX 70293055 70293297 -92306633 + MIR SINE MIR 2 260 -2 187 400 29 9 chrX 70293588 70293693 -92306237 - L2 LINE L2 -27 3286 3180 2937 151 16 25 chrX 70294515 70295401 -92304529 + L1PA16 LINE L1 5328 6160 -6 571 170 0 0 chrX 70295518 70295630 -92304300 - L1MA4 LINE L1 -14 6286 6175 4654 159 27 4 chrX 70295679 70296537 -92303393 - L1PA16 LINE L1 -105 6061 5165 603 0 0 0 chrX 70296537 70296604 -92303326 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 4654 159 27 4 chrX 70296604 70296916 -92303014 - L1PA16 LINE L1 -1001 5165 4862 821 231 143 26 chrX 70296919 70297303 -92302627 + LTR36 LTR ERV1 145 611 0 1728 201 46 1 chrX 70297303 70298014 -92301916 - L1M2 LINE L1 -681 5619 4883 1663 174 13 3 chrX 70298050 70298367 -92301563 - L1PA16 LINE L1 -13 6856 6537 4371 208 48 13 chrX 70298368 70300078 -92299852 - L1PA16 LINE L1 -477 6392 4621 7117 243 65 64 chrX 70300085 70301047 -92298883 - L1PA16 LINE L1 -3546 3303 2343 2005 134 41 9 chrX 70301047 70301391 -92298539 - THE1A LTR MaLR 0 355 1 7117 243 65 64 chrX 70301391 70303700 -92296230 - L1PA16 LINE L1 -4506 2343 1 372 193 82 23 chrX 70305356 70305527 -92294403 - L1M4 LINE L1 -1612 4534 4354 * 477 266 7 13 chrX 70305508 70305662 -92294268 - L1MD2 LINE L1 -13 6346 6194 189 74 0 0 chrX 70305665 70305692 -92294238 + (TG)n Simple_repeat Simple_repeat 2 28 0 2120 174 24 13 chrX 70305720 70306174 -92293756 - L1MA10 LINE L1 -1 6333 5875 512 155 0 0 chrX 70306179 70306276 -92293654 - L1MDa LINE L1 -4143 2397 2301 577 196 18 89 chrX 70306363 70306545 -92293385 - L1MA4 LINE L1 -6 6294 6129 1453 223 11 7 chrX 70306545 70306828 -92293102 + AluJo SINE Alu 5 288 -24 577 196 18 89 chrX 70306828 70306870 -92293060 - L1MA4 LINE L1 -171 6129 6086 312 133 0 0 chrX 70306878 70306938 -92292992 - L1MDa LINE L1 -4816 1724 1665 851 187 5 35 chrX 70306955 70307158 -92292772 - L1MA7 LINE L1 -2 6289 6093 * 3048 22 3 0 chrX 70307156 70307513 -92292417 - L1PA4 LINE L1 -3 6152 5795 810 210 25 5 chrX 70307519 70307719 -92292211 - L1MA5 LINE L1 -193 6107 5904 462 199 7 7 chrX 70307789 70307925 -92292005 - L1MDa LINE L1 -5298 1242 1107 263 203 0 0 chrX 70309042 70309101 -92290829 - L1MDa LINE L1 -5416 1124 1066 2442 82 3 0 chrX 70309238 70309567 -92290363 - L1PA7 LINE L1 0 6154 5825 823 371 30 22 chrX 70309612 70310189 -92289741 + L1PA13 LINE L1 788 1368 -6206 275 213 13 13 chrX 70310368 70310443 -92289487 + L1PA13 LINE L1 2108 2182 -5399 1050 325 17 14 chrX 70310675 70311254 -92288676 + L1PA13 LINE L1 2182 2762 -4819 3265 191 65 38 chrX 70311289 70312114 -92287816 + L1MEc LINE L1 2057 2871 -3344 2218 131 0 0 chrX 70312114 70312411 -92287519 - AluSx SINE Alu -15 297 1 3265 191 65 38 chrX 70312411 70312652 -92287278 + L1MEc LINE L1 2871 3104 -3111 1369 213 31 1 chrX 70312702 70313073 -92286857 + L1PA13 LINE L1 2756 3159 -4425 * 4159 40 0 0 chrX 70313072 70313601 -92286329 - L1P LINE L1 -1069 5077 4549 7836 14 1 0 chrX 70313604 70314634 -92285296 + L1PA2 LINE L1 5122 6153 -2 754 163 0 0 chrX 70314702 70314831 -92285099 + L1PA13 LINE L1 3145 3273 -4311 246 128 0 0 chrX 70315491 70315530 -92284400 + (GA)n Simple_repeat Simple_repeat 2 40 0 586 180 259 0 chrX 70315573 70315712 -92284218 + L1PA13 LINE L1 5119 5293 -2291 447 184 0 70 chrX 70315735 70315849 -92284081 + L1PA13 LINE L1 6117 6222 -1362 368 140 0 0 chrX 70315846 70315903 -92284027 - L1MB2 LINE L1 -182 5989 5933 * 974 209 29 138 chrX 70315922 70316334 -92283596 - MLT1B LTR MaLR -19 371 5 2714 185 36 30 chrX 70316338 70316471 -92283459 - L1MB2 LINE L1 -246 5937 5806 354 23 0 0 chrX 70316471 70316514 -92283416 + (TG)n Simple_repeat Simple_repeat 2 44 0 2714 185 36 30 chrX 70316514 70317038 -92282892 - L1MB2 LINE L1 -377 5806 5276 19479 64 1 1 chrX 70317127 70323133 -92276797 - L1PA4 LINE L1 0 6155 6 1776 194 12 3 chrX 70323135 70323465 -92276465 + MLT1A1 LTR MaLR 33 365 0 3114 151 20 2 chrX 70323544 70324102 -92275828 - L1PA16 LINE L1 -26 6140 5573 3024 233 77 12 chrX 70324101 70325215 -92274715 - L1MB2 LINE L1 -944 5202 4016 * 4187 206 31 2 chrX 70325213 70326244 -92273686 - L1MC2 LINE L1 -112 6232 5162 372 274 20 0 chrX 70326244 70326390 -92273540 + L1M4 LINE L1 2942 3090 -3056 1177 336 8 0 chrX 70326391 70326769 -92273161 + L1PA5 LINE L1 1 381 -6406 23581 51 2 0 chrX 70326770 70330544 -92269386 - L1PA4 LINE L1 -2 6153 2365 15618 126 17 2 chrX 70330646 70333495 -92266435 + L1PA7 LINE L1 1867 4750 -1396 11169 125 16 7 chrX 70333496 70335163 -92264767 + L1PA5 LINE L1 653 2335 -4462 2770 98 2 4 chrX 70335155 70335527 -92264403 + L1PA5 LINE L1 2544 2915 -3882 * 12209 81 5 2 chrX 70335527 70337887 -92262043 + L1PA5 LINE L1 4451 6817 0 6870 82 13 0 chrX 70337887 70339273 -92260657 + L1PA7 LINE L1 4743 6139 -15 249 57 0 0 chrX 70339273 70339308 -92260622 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2770 98 2 4 chrX 70339308 70339337 -92260593 + L1PA5 LINE L1 2912 2945 -3852 2387 220 41 0 chrX 70339538 70340080 -92259850 + L1PBa LINE L1 1 564 -6299 11482 134 31 45 chrX 70340191 70342964 -92256966 - L1P3 LINE L1 -3625 2836 2 1102 138 6 0 chrX 70342989 70343148 -92256782 - MLT2A1 LTR ERVL -83 361 202 1168 265 73 35 chrX 70343189 70343734 -92256196 - L1MCa LINE L1 -3366 3060 2481 3185 177 32 17 chrX 70343734 70344323 -92255607 - MER7C DNA MER2_type -4 598 1 1168 265 73 35 chrX 70344323 70344476 -92255454 - L1MCa LINE L1 -3945 2481 2335 8758 227 136 54 chrX 70344482 70346196 -92253734 - L1PA13 LINE L1 -4 7597 6025 2428 170 49 7 chrX 70346196 70346607 -92253323 - MSTA LTR MaLR 0 428 1 8034 188 34 20 chrX 70346607 70348163 -92251767 - MSTA-int LTR MaLR 0 1580 3 1124 133 0 6 chrX 70348165 70348331 -92251599 - MSTA LTR MaLR 0 428 264 8758 227 136 54 chrX 70348331 70349073 -92250857 - L1PA13 LINE L1 -1576 6025 5345 264 30 0 0 chrX 70349073 70349106 -92250824 + (TTG)n Simple_repeat Simple_repeat 2 34 0 8758 227 136 54 chrX 70349106 70353499 -92246431 - L1PA13 LINE L1 -2256 5345 37 6178 167 32 29 chrX 70353500 70354714 -92245216 - L1M3f LINE L1 -4107 1221 4 299 204 0 0 chrX 70354731 70354780 -92245150 - Tigger7 DNA MER2_type -2219 268 220 394 233 12 61 chrX 70356256 70356419 -92243511 + CT-rich Low_complexity Low_complexity 2 156 0 306 73 0 0 chrX 70356734 70356775 -92243155 + (T)n Simple_repeat Simple_repeat 1 41 0 15154 45 2 0 chrX 70357802 70360109 -92239821 + L1PA4 LINE L1 3525 5835 -320 5528 127 7 29 chrX 70360209 70360418 -92239512 + L1PB2 LINE L1 5190 5402 -749 2370 23 15 0 chrX 70360418 70360694 -92239236 + L1PA4 LINE L1 5869 6159 0 5528 127 7 29 chrX 70360694 70361465 -92238465 + L1PB2 LINE L1 5402 6150 -1 1711 259 53 14 chrX 70361675 70362261 -92237669 - L1MDa LINE L1 -1461 5079 4471 310 209 66 11 chrX 70362265 70362356 -92237574 - L1PA15 LINE L1 0 6165 6070 2287 313 24 27 chrX 70362392 70363196 -92236734 - L1PA13 LINE L1 -5986 801 1 632 269 57 0 chrX 70363206 70363418 -92236512 - L1MDa LINE L1 -2063 4477 4254 2261 138 48 20 chrX 70363421 70363775 -92236155 - THE1B LTR MaLR 0 364 1 884 135 0 0 chrX 70363775 70363908 -92236022 - THE1B-int LTR MaLR 0 1580 1448 * 9678 115 3 0 chrX 70363904 70365238 -92234692 - THE1B-int LTR MaLR -241 1339 2 1126 155 14 39 chrX 70365239 70365446 -92234484 - THE1B LTR MaLR 0 364 163 1142 223 77 17 chrX 70365553 70365665 -92234265 + MSTB1 LTR MaLR 102 206 -226 204 67 0 0 chrX 70365665 70365695 -92234235 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1142 223 77 17 chrX 70365695 70365882 -92234048 + MSTB1 LTR MaLR 206 419 -13 2809 261 53 60 chrX 70365887 70366329 -92233601 - L1MDa LINE L1 -2503 4037 3593 1450 205 0 36 chrX 70366329 70366631 -92233299 - AluJb SINE Alu -19 293 3 2809 261 53 60 chrX 70366631 70367195 -92232735 - L1MDa LINE L1 -2947 3593 3026 285 138 44 5 chrX 70367195 70367262 -92232668 + MADE1 DNA Mariner 1 46 -34 2809 261 53 60 chrX 70367262 70367854 -92232076 - L1MDa LINE L1 -3514 3026 2384 4033 61 16 4 chrX 70367874 70368367 -92231563 - L1PA8 LINE L1 0 6172 5674 26596 83 6 9 chrX 70368467 70372084 -92227846 - L1P LINE L1 -2540 3606 1 9793 253 29 14 chrX 70372084 70372691 -92227239 + L1 LINE L1 2324 2921 -3225 1542 226 126 11 chrX 70372691 70373072 -92226858 + MSTB LTR MaLR 2 426 0 9793 253 29 14 chrX 70373072 70375092 -92224838 + L1 LINE L1 2921 4988 -1158 11205 117 20 9 chrX 70375092 70376790 -92223140 + L1P3 LINE L1 81 1776 -4675 21 0 0 0 chrX 70381755 70381776 -92218154 + GC_rich Low_complexity Low_complexity 1 21 0 325 287 139 0 chrX 70382718 70382819 -92217111 + MIR SINE MIR 34 148 -60 334 256 26 26 chrX 70382866 70382983 -92216947 + MIR SINE MIR 19 135 -73 183 232 18 36 chrX 70384369 70384425 -92215505 + L2 LINE L2 3234 3288 -25 206 269 0 39 chrX 70385161 70385213 -92214717 + L2 LINE L2 3191 3240 -32 1704 282 90 42 chrX 70385222 70385303 -92214627 + L2 LINE L2 1271 1347 -1967 2378 119 72 17 chrX 70385303 70385648 -92214282 - THE1B LTR MaLR 0 364 1 1704 282 90 42 chrX 70385648 70386374 -92213556 + L2 LINE L2 1347 2117 -1197 184 309 124 10 chrX 70387616 70387713 -92212217 - L2 LINE L2 -1 3312 3205 13419 189 10 24 chrX 70388234 70392164 -92207766 - L1P3 LINE L1 -2512 3949 3 602 160 33 0 chrX 70392165 70392275 -92207655 + MSTB1 LTR MaLR 314 426 0 8090 206 18 10 chrX 70392369 70394234 -92205696 + L1PBa LINE L1 3 1644 -5219 4173 152 49 0 chrX 70394224 70394374 -92205556 + L1PBb LINE L1 518 659 -5545 * 243 0 0 0 chrX 70394374 70394401 -92205529 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4173 152 49 0 chrX 70394401 70395414 -92204516 + L1PBb LINE L1 659 1822 -4382 2315 153 31 70 chrX 70395414 70395931 -92203999 - MER11A LTR ERVK 0 1266 770 3195 162 84 17 chrX 70396655 70397249 -92202681 - MER67B LTR ERV1 -26 635 2 332 189 200 11 chrX 70398272 70398362 -92201568 - MIR SINE MIR -143 119 13 489 275 112 3 chrX 70399788 70399988 -92199942 + MIR SINE MIR 28 244 -18 274 271 103 93 chrX 70401296 70401598 -92198332 + L2 LINE L2 2968 3272 0 225 204 0 0 chrX 70401658 70401702 -92198228 + (TA)n Simple_repeat Simple_repeat 1 44 0 21120 117 11 6 chrX 70404131 70407247 -92192683 - L1P LINE L1 -3012 3134 2 7519 111 11 1 chrX 70407248 70408363 -92191567 - L1P LINE L1 -1396 4750 3625 16227 36 1 0 chrX 70408463 70410697 -92189233 - L1P1 LINE L1 -466 5689 3455 2428 44 3 0 chrX 70410694 70411010 -92188920 + L1P LINE L1 3064 3380 -2766 * 934 130 43 27 chrX 70411008 70411192 -92188738 + L1M1 LINE L1 2949 3135 -4430 * 8019 32 0 0 chrX 70411873 70412794 -92187136 - L1PA4 LINE L1 -3 6152 5231 1424 47 0 0 chrX 70412794 70412965 -92186965 + L1P LINE L1 4587 4757 -1389 * 10624 168 5 7 chrX 70412961 70414639 -92185291 + L1PA12 LINE L1 330 2004 -5577 7805 229 94 8 chrX 70414637 70415668 -92184262 + L1PA13 LINE L1 339 1280 -5517 * 342 0 0 0 chrX 70415668 70415706 -92184224 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 7805 229 94 8 chrX 70415706 70417593 -92182337 + L1PA13 LINE L1 1280 3529 -3268 6218 115 7 11 chrX 70417693 70417970 -92181960 + L1PA13 LINE L1 4887 5164 -1650 189 0 0 0 chrX 70417970 70417991 -92181939 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 6218 115 7 11 chrX 70417991 70419668 -92180262 + L1PA13 LINE L1 5164 6814 0 1484 210 0 3 chrX 70419668 70419960 -92179970 + L1MB8 LINE L1 5878 6176 -2 8176 157 47 115 chrX 70420339 70421761 -92178169 + L1M1 LINE L1 888 2149 -5416 757 43 22 0 chrX 70421761 70421853 -92178077 - L1PA4 LINE L1 -2 6153 6060 8176 157 47 115 chrX 70421853 70422348 -92177582 + L1M1 LINE L1 2149 2676 -4889 2112 251 40 16 chrX 70422449 70423122 -92176808 - L1PA13 LINE L1 -2890 3907 3219 7366 49 0 0 chrX 70423128 70423207 -92176723 - L1PA5 LINE L1 0 6154 6076 2343 92 0 0 chrX 70423207 70423501 -92176429 - AluY SINE Alu -17 294 1 7366 49 0 0 chrX 70423501 70424489 -92175441 - L1PA5 LINE L1 -77 6077 5122 4516 65 0 3 chrX 70424496 70425070 -92174860 - L1PA5 LINE L1 -1406 4740 4169 * 8218 63 2 0 chrX 70425068 70426118 -92173812 + L1PA5 LINE L1 3097 4148 -1998 5115 261 50 16 chrX 70426118 70428114 -92171816 - L1PA13 LINE L1 -3569 3228 1131 2624 96 20 14 chrX 70428114 70428467 -92171463 - THE1A LTR MaLR 0 355 1 10106 103 91 1 chrX 70428467 70429916 -92170014 - THE1A-int LTR MaLR 0 1580 1 2578 107 11 8 chrX 70429916 70430090 -92169840 - THE1A LTR MaLR 0 355 183 182 33 67 0 chrX 70430090 70430120 -92169810 + A-rich Low_complexity Low_complexity 4 35 0 2578 107 11 8 chrX 70430120 70430299 -92169631 - THE1A LTR MaLR -172 183 1 5474 228 27 14 chrX 70430302 70431419 -92168511 - L1PA13 LINE L1 -5655 1132 2 468 306 48 35 chrX 70431431 70431803 -92168127 - L1MDa LINE L1 -4148 2392 2016 5402 95 4 1 chrX 70431861 70432565 -92167365 - L1PA7 LINE L1 -3 6151 5446 10194 133 8 18 chrX 70432665 70435405 -92164525 - L1P3 LINE L1 -3557 2904 160 216 353 0 0 chrX 70435405 70435473 -92164457 + CT-rich Low_complexity Low_complexity 2 69 0 267 31 0 0 chrX 70435484 70435516 -92164414 + (TC)n Simple_repeat Simple_repeat 2 33 0 297 51 0 0 chrX 70435522 70435561 -92164369 + MLT2C1 LTR ERVL 359 397 0 514 256 54 15 chrX 70435561 70435764 -92164166 + L1MEc LINE L1 1569 1779 -4617 302 295 67 75 chrX 70435924 70436297 -92163633 + L1MCb LINE L1 66 435 -5610 2321 113 3 0 chrX 70436396 70436705 -92163225 + AluSp SINE Alu 1 310 -3 388 334 45 75 chrX 70436721 70437029 -92162901 + L1MCb LINE L1 506 804 -5241 574 268 40 20 chrX 70437113 70437415 -92162515 + L1MCb LINE L1 777 1084 -4962 598 230 53 13 chrX 70437420 70437572 -92162358 + MER20 DNA MER1_type 1 158 -61 369 103 167 0 chrX 70437729 70437807 -92162123 + L1MA9 LINE L1 6184 6274 -38 463 303 36 0 chrX 70440858 70441079 -92158851 + L1MCb LINE L1 1196 1424 -5140 22 0 0 0 chrX 70441757 70441779 -92158151 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chrX 70441922 70441969 -92157961 + AT_rich Low_complexity Low_complexity 1 47 0 712 239 62 73 chrX 70443504 70443889 -92156041 + L1MCb LINE L1 1414 1794 -4770 1265 254 63 9 chrX 70443899 70444453 -92155477 + L1MCb LINE L1 3053 3636 -2928 * 3858 149 10 4 chrX 70444445 70445149 -92154781 + L1MA4 LINE L1 5356 6063 -237 640 198 0 0 chrX 70445155 70445261 -92154669 + FLAM_C SINE Alu 6 111 -32 703 184 13 0 chrX 70445318 70445470 -92154460 + L1MA4 LINE L1 6054 6207 -93 834 310 44 30 chrX 70445555 70446333 -92153597 - HERVI LTR ERV1 -4912 2048 951 594 307 4 9 chrX 70446507 70446732 -92153198 - HERVI LTR ERV1 -6776 1009 786 1984 214 5 30 chrX 70447013 70447415 -92152515 + L1PA12 LINE L1 592 983 -6598 7402 76 4 2 chrX 70447522 70448583 -92151347 - L1P LINE L1 -862 5284 4222 1174 168 102 108 chrX 70448583 70449036 -92150894 - LTR7 LTR ERV1 0 450 1 3129 139 16 9 chrX 70449036 70449589 -92150341 - HERVH LTR ERV1 0 7713 7157 * 10238 140 6 5 chrX 70449582 70451291 -92148639 - HERVH LTR ERV1 -1697 6016 4306 2474 158 11 4 chrX 70451292 70451766 -92148164 - HERVH LTR ERV1 -6435 1278 802 1422 181 113 36 chrX 70451827 70452191 -92147739 - HERVH LTR ERV1 -7254 459 68 21683 133 9 20 chrX 70452201 70455983 -92143947 - L1P LINE L1 -2392 3754 11 3679 214 14 78 chrX 70456003 70458553 -92141377 - L1MA4 LINE L1 -282 6200 3827 1288 153 0 0 chrX 70458574 70458757 -92141173 - AluSx SINE Alu -129 183 1 3200 213 31 1 chrX 70458761 70459659 -92140271 - L1MA4 LINE L1 -2591 3737 2813 5606 214 43 18 chrX 70459787 70461957 -92137973 - L1MA4 LINE L1 -3984 2344 228 2185 185 24 7 chrX 70461957 70462378 -92137552 + MSTA LTR MaLR 1 428 0 8626 174 25 22 chrX 70462378 70464024 -92135906 + MSTA-int LTR MaLR 1 1650 -1 2163 148 64 5 chrX 70464030 70464434 -92135496 + MSTA LTR MaLR 1 428 0 5606 214 43 18 chrX 70464434 70464541 -92135389 - L1MA4 LINE L1 -6104 224 1 865 217 66 37 chrX 70464571 70464843 -92135087 + L1MB7 LINE L1 5905 6184 0 300 225 0 0 chrX 70464840 70464911 -92135019 - L1MDb LINE L1 -5341 1068 998 * 954 171 46 0 chrX 70464919 70465094 -92134836 - MLT1C LTR MaLR 0 467 285 401 294 44 6 chrX 70465095 70465255 -92134675 - L1MDb LINE L1 -5548 861 696 1300 291 94 17 chrX 70465994 70466686 -92133244 + L1MEc LINE L1 32 776 -5620 952 316 31 41 chrX 70466695 70467185 -92132745 + L1M3d LINE L1 13 497 -5394 266 353 1 30 chrX 70467194 70467327 -92132603 + L1M3d LINE L1 315 691 -5200 903 266 78 20 chrX 70467363 70467900 -92132030 + L1MEc LINE L1 1002 1569 -4827 1144 225 55 17 chrX 70467906 70468288 -92131642 + MLT2D LTR ERVL 3 393 -71 17298 117 9 3 chrX 70468310 70471758 -92128172 - L1PA7 LINE L1 -5 6149 2684 2844 51 3 6 chrX 70471858 70472213 -92127717 + L1PA8 LINE L1 5806 6159 -13 21 0 0 0 chrX 70472284 70472305 -92127625 + AT_rich Low_complexity Low_complexity 1 21 0 2536 231 33 3 chrX 70472312 70472764 -92127166 + L1 LINE L1 3943 4427 -1719 196 53 53 0 chrX 70472764 70472802 -92127128 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2536 231 33 3 chrX 70472802 70473082 -92126848 + L1 LINE L1 4427 4697 -1449 4391 119 26 0 chrX 70473199 70473924 -92126006 - HERVH48 LTR ERV1 -3697 2957 2214 409 92 46 0 chrX 70473924 70473989 -92125941 - HERVH48 LTR ERV1 -2067 4587 4520 6180 112 42 19 chrX 70474004 70475009 -92124921 - HERVH48 LTR ERV1 -4441 2213 1186 5147 141 19 2 chrX 70474999 70475859 -92124071 - HERVH48 LTR ERV1 -5780 874 1 * 1755 125 0 0 chrX 70475859 70476115 -92123815 - MER48 LTR ERV1 0 387 132 1054 126 0 0 chrX 70476154 70476305 -92123625 - MER48 LTR ERV1 -235 152 2 256 272 87 11 chrX 70476357 70476449 -92123481 - L1PA15-16 LINE L1 -6576 274 176 2041 56 0 19 chrX 70476470 70476739 -92123191 + L1PA7 LINE L1 5891 6154 0 6020 26 0 0 chrX 70476742 70477539 -92122391 + L1PA3 LINE L1 5193 5989 -166 804 323 40 61 chrX 70477685 70478524 -92121406 - L1PBa LINE L1 -6611 970 149 2147 264 37 5 chrX 70478532 70479202 -92120728 - L1 LINE L1 -923 5223 4532 7513 33 1 0 chrX 70479204 70480349 -92119581 + L1PA3 LINE L1 5007 6152 -3 30 0 0 0 chrX 70480379 70480409 -92119521 + AT_rich Low_complexity Low_complexity 1 30 0 363 295 0 27 chrX 70480411 70480560 -92119370 - L1PA15-16 LINE L1 -6702 147 3 4804 202 43 10 chrX 70481134 70481204 -92118726 + L1MB1 LINE L1 4027 4093 -2075 387 0 0 0 chrX 70481204 70481250 -92118680 + L1PA4 LINE L1 6106 6153 -2 4804 202 43 10 chrX 70481250 70482380 -92117550 + L1MB1 LINE L1 4093 5326 -842 1700 47 5 0 chrX 70482380 70482614 -92117316 + L1PA3 LINE L1 5935 6169 0 4804 202 43 10 chrX 70482614 70483429 -92116501 + L1MB1 LINE L1 5326 6113 -55 4264 89 0 0 chrX 70483425 70484029 -92115901 - L1PA8 LINE L1 -206 5966 5363 * 4168 104 1 3 chrX 70484027 70484681 -92115249 + L1PA8 LINE L1 4705 5357 -789 * 240 171 0 0 chrX 70484680 70484721 -92115209 + L1MB1 LINE L1 6127 6167 -1 * 380 322 29 11 chrX 70484735 70484909 -92115021 + L1 LINE L1 3171 3347 -2799 266 241 11 23 chrX 70484911 70484998 -92114932 - L1M4 LINE L1 -2100 4046 3961 3110 147 23 3 chrX 70485016 70485582 -92114348 - L1MA4 LINE L1 -427 5873 5297 3257 113 19 6 chrX 70485603 70486115 -92113815 - L1PB1 LINE L1 0 6151 5633 324 0 0 0 chrX 70486147 70486183 -92113747 + (T)n Simple_repeat Simple_repeat 1 36 0 1000 308 31 36 chrX 70486583 70487149 -92112781 + L1PA12 LINE L1 1539 2080 -5501 736 215 9 17 chrX 70487135 70487370 -92112560 + L1 LINE L1 4243 4473 -1673 * 7216 45 3 2 chrX 70487377 70488735 -92111195 - L1PA4 LINE L1 0 6155 4795 8101 40 2 1 chrX 70488735 70489782 -92110148 + L1P LINE L1 3786 4833 -1313 3155 212 45 4 chrX 70489831 70490811 -92109119 + L1P4 LINE L1 4480 5489 -676 25691 57 2 1 chrX 70490819 70494249 -92105681 + L1P LINE L1 2 3433 -2713 23 68 0 0 chrX 70494684 70494728 -92105202 + AT_rich Low_complexity Low_complexity 1 44 0 1571 182 22 4 chrX 70495286 70495561 -92104369 - AluJo SINE Alu -32 280 1 28930 58 6 8 chrX 70496095 70499182 -92100748 - L1P LINE L1 -1221 4925 1849 11648 42 5 2 chrX 70499182 70501390 -92098540 + L1PA3 LINE L1 3942 6152 -3 28930 58 6 8 chrX 70501390 70502318 -92097612 - L1P LINE L1 -4297 1849 920 6878 63 2 0 chrX 70502318 70503448 -92096482 + L1PA4 LINE L1 5017 6149 -6 3303 219 17 23 chrX 70503513 70503788 -92096142 - L1PB4 LINE L1 -3 6153 5878 288 0 0 0 chrX 70503788 70503820 -92096110 + (TG)n Simple_repeat Simple_repeat 2 33 0 3303 219 17 23 chrX 70503820 70505220 -92094710 - L1PB4 LINE L1 -278 5878 4398 10221 148 6 3 chrX 70505228 70507781 -92092149 - L1PA10 LINE L1 -4 6164 3608 2027 148 5 24 chrX 70507785 70508157 -92091773 - L1PB1 LINE L1 -3 6148 5784 267 115 35 44 chrX 70508158 70508271 -92091659 + (TA)n Simple_repeat Simple_repeat 2 113 0 3093 169 19 19 chrX 70508280 70509433 -92090497 - L1PB1 LINE L1 -360 5791 4633 648 0 0 0 chrX 70509809 70509881 -92090049 + (TA)n Simple_repeat Simple_repeat 2 73 0 8572 86 9 3 chrX 70509881 70511614 -92088316 - L1PA7 LINE L1 -118 6036 4295 843 60 17 0 chrX 70511614 70511731 -92088199 - L1PA4 LINE L1 0 6155 6037 8572 86 9 3 chrX 70511731 70511956 -92087974 - L1PA7 LINE L1 -1859 4295 4073 1996 269 36 24 chrX 70512459 70512817 -92087113 - L1ME1 LINE L1 -19 6147 5795 945 240 40 59 chrX 70512817 70513188 -92086742 - MLT1A1 LTR MaLR 0 365 2 1996 269 36 24 chrX 70513188 70513663 -92086267 - L1ME1 LINE L1 -371 5795 5304 1124 227 70 13 chrX 70513714 70514101 -92085829 - L1ME1 LINE L1 -998 5148 4740 2454 51 0 0 chrX 70514101 70514413 -92085517 - LTR17 LTR ERV1 -468 312 1 2097 90 0 0 chrX 70514413 70514702 -92085228 - HERV17 LTR ERV1 0 8626 8338 27901 57 3 2 chrX 70514720 70518306 -92081624 - HERV17 LTR ERV1 -2607 6019 2430 8673 84 12 2 chrX 70518291 70519495 -92080435 - HERV17 LTR ERV1 -6612 2014 800 * 4972 85 0 17 chrX 70519673 70520369 -92079561 - HERV17 LTR ERV1 -7942 684 1 3248 113 46 4 chrX 70520383 70520879 -92079051 - LTR17 LTR ERV1 -7 773 257 295 233 19 0 chrX 70520881 70520984 -92078946 - L1ME1 LINE L1 -1422 4724 4620 857 236 59 20 chrX 70520985 70521341 -92078589 - L1ME1 LINE L1 -1595 4551 4182 1629 189 39 0 chrX 70521356 70521642 -92078288 - AluJb SINE Alu -15 297 1 6120 173 24 21 chrX 70521656 70522711 -92077219 - L1 LINE L1 -3090 4475 3410 204 40 0 0 chrX 70522711 70522736 -92077194 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6120 173 24 21 chrX 70522736 70523731 -92076199 - L1 LINE L1 -4155 3410 2419 1686 218 218 4 chrX 70523727 70524217 -92075713 - L1 LINE L1 -6176 1389 795 * 2633 82 3 0 chrX 70524217 70524572 -92075358 + MLT2A1 LTR ERVL 1 356 -88 324 0 0 0 chrX 70524575 70524611 -92075319 + (TA)n Simple_repeat Simple_repeat 2 37 0 238 111 0 0 chrX 70524615 70524651 -92075279 + MLT2A1 LTR ERVL 485 520 0 6648 80 9 0 chrX 70524651 70525554 -92074376 + HERVL-A1 LTR ERVL 1 911 -4743 1534 122 4 0 chrX 70525559 70525789 -92074141 + MLT2A1 LTR ERVL 100 330 -114 180 0 0 0 chrX 70525796 70525816 -92074114 + (TA)n Simple_repeat Simple_repeat 2 21 0 2956 248 16 34 chrX 70525854 70526651 -92073279 - L1 LINE L1 -6766 799 17 11905 186 21 41 chrX 70526655 70529224 -92070706 - L1M1 LINE L1 -4940 2625 108 1673 298 80 22 chrX 70529324 70529347 -92070583 - L1MEc LINE L1 -5288 1108 1088 2501 162 34 0 chrX 70529347 70529761 -92070169 - MSTA LTR MaLR 0 428 1 1673 298 80 22 chrX 70529761 70530742 -92069188 - L1MEc LINE L1 -5308 1088 46 2943 206 28 76 chrX 70530767 70532037 -92067893 - L1MB8 LINE L1 -2 6176 4969 1042 234 65 8 chrX 70532040 70532438 -92067492 - L1MB8 LINE L1 -1560 4586 4166 * 1614 242 10 31 chrX 70532435 70532766 -92067164 + L1 LINE L1 3594 3912 -2234 967 42 0 0 chrX 70532766 70532886 -92067044 + L1PA2 LINE L1 6036 6155 0 1614 242 10 31 chrX 70532886 70533063 -92066867 + L1 LINE L1 3912 4091 -2055 649 228 35 26 chrX 70533075 70533198 -92066732 + L1 LINE L1 4316 4443 -1703 1681 186 54 23 chrX 70533198 70533552 -92066378 + MLT1A1 LTR MaLR 1 365 0 649 228 35 26 chrX 70533552 70533660 -92066270 + L1 LINE L1 4443 4549 -1597 24 0 0 0 chrX 70533660 70533684 -92066246 + AT_rich Low_complexity Low_complexity 1 24 0 1861 81 8 0 chrX 70533800 70534060 -92065870 - L1P3 LINE L1 -393 5761 5500 3664 221 25 15 chrX 70534061 70535117 -92064813 - L1MB8 LINE L1 -2187 3959 2894 * 10967 221 29 36 chrX 70535116 70539010 -92060920 - L1P3 LINE L1 -2551 3910 27 489 248 61 4 chrX 70539022 70539252 -92060678 - L1 LINE L1 -2868 3278 3036 993 209 8 8 chrX 70539260 70539513 -92060417 - L1 LINE L1 -3045 3101 2849 225 0 0 0 chrX 70539518 70539543 -92060387 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1553 202 86 0 chrX 70539547 70539883 -92060047 - MER57A LTR ERV1 -38 365 1 11081 206 22 11 chrX 70539972 70541224 -92058706 - L1PB1 LINE L1 -1 6866 5629 182 62 31 0 chrX 70541224 70541256 -92058674 + (TA)n Simple_repeat Simple_repeat 1 33 0 11081 206 22 11 chrX 70541256 70544026 -92055904 - L1PB1 LINE L1 -1238 5629 2799 14388 127 45 29 chrX 70544028 70546723 -92053207 - L1PB1 LINE L1 -4123 2740 3 908 284 71 0 chrX 70546744 70547054 -92052876 - L1 LINE L1 -3293 2853 2522 1448 103 0 22 chrX 70547095 70547318 -92052612 - L1PA13 LINE L1 -4 6159 5942 8447 52 1 0 chrX 70547318 70548451 -92051479 + L1P LINE L1 2578 3711 -2435 2544 257 13 23 chrX 70548449 70549444 -92050486 + L1PA15-16 LINE L1 2067 3051 -3798 * 1298 114 25 8 chrX 70549462 70549699 -92050231 - L1P4 LINE L1 -656 5512 5272 306 0 0 0 chrX 70549699 70549733 -92050197 + (TA)n Simple_repeat Simple_repeat 1 34 0 7315 47 0 0 chrX 70549734 70551340 -92048590 - L1PA5 LINE L1 -11 6143 4537 272 353 20 37 chrX 70551340 70551584 -92048346 - L1PA15-16 LINE L1 -5320 1542 1303 234 353 29 59 chrX 70551828 70552168 -92047762 - L1PA15-16 LINE L1 -6179 684 355 2342 87 27 137 chrX 70552192 70552639 -92047291 - MER48 LTR ERV1 0 398 1 2738 102 8 5 chrX 70552639 70553033 -92046897 - HERVH48 LTR ERV1 0 6654 6260 * 9750 135 13 3 chrX 70553031 70554842 -92045088 - HERVH48 LTR ERV1 -1395 5259 3397 234 0 0 0 chrX 70555390 70555416 -92044514 + (T)n Simple_repeat Simple_repeat 1 26 0 11364 217 44 12 chrX 70555416 70560722 -92039208 - L1 LINE L1 -840 5488 5 317 143 0 0 chrX 70560740 70560789 -92039141 - Tigger7 DNA MER2_type -2219 268 220 238 238 0 33 chrX 70562227 70562382 -92037548 + CT-rich Low_complexity Low_complexity 1 149 0 222 311 23 45 chrX 70562957 70563089 -92036841 + MIR SINE MIR 19 147 -61 355 272 117 0 chrX 70563452 70563555 -92036375 + MIR SINE MIR 32 146 -62 315 299 17 17 chrX 70563599 70563716 -92036214 + MIR SINE MIR 19 135 -73 207 313 0 0 chrX 70565890 70565938 -92033992 + L2 LINE L2 3234 3281 -32 3391 290 77 43 chrX 70565939 70567541 -92032389 + L2 LINE L2 1262 2918 -396 272 315 25 113 chrX 70568440 70568643 -92031287 + MIR3 SINE MIR 9 193 -15 1759 216 10 26 chrX 70569315 70569811 -92030119 - L1 LINE L1 -2097 4049 3562 775 164 0 0 chrX 70569811 70569963 -92029967 + MER6 DNA MER2_type 602 753 -112 33486 103 13 7 chrX 70569963 70570783 -92029147 - L1PA6 LINE L1 -6 6148 5335 4512 28 0 0 chrX 70570783 70571312 -92028618 - L1PA4 LINE L1 -4 6151 5623 33486 103 13 7 chrX 70571312 70576596 -92023334 - L1PA6 LINE L1 -819 5335 11 323 289 0 0 chrX 70576905 70576988 -92022942 + MER63 DNA MER1_type 37 745 -317 28579 101 24 89 chrX 70577114 70578012 -92021918 - L1PA12 LINE L1 -7 6161 5206 1846 148 7 3 chrX 70578012 70578323 -92021607 + AluSx SINE Alu 1 312 0 28579 101 24 89 chrX 70578323 70581429 -92018501 - L1PA12 LINE L1 -962 5206 2785 11674 24 1 0 chrX 70581429 70583571 -92016359 - L1PA2 LINE L1 0 6155 4013 28579 101 24 89 chrX 70583571 70586186 -92013744 - L1PA12 LINE L1 -3383 2785 2 4087 255 39 52 chrX 70586190 70588515 -92011415 - L1PA12 LINE L1 -3930 3654 16 480 326 40 18 chrX 70588554 70588778 -92011152 + MIR SINE MIR 32 260 -2 219 146 0 0 chrX 70588779 70588820 -92011110 + (CAT)n Simple_repeat Simple_repeat 1 41 0 6985 54 33 3 chrX 70588978 70589846 -92010084 + MER11D LTR ERVK 4 897 0 2172 138 0 0 chrX 70590405 70590710 -92009220 + AluSx SINE Alu 1 305 -7 207 379 0 0 chrX 70590980 70591083 -92008847 - MIR SINE MIR -12 250 148 50 31 0 0 chrX 70591096 70591160 -92008770 + AT_rich Low_complexity Low_complexity 1 64 0 12261 179 70 17 chrX 70592307 70598130 -92001800 + L1PB1 LINE L1 3 6201 -666 9245 53 10 1 chrX 70598130 70600193 -91999737 + L1PA5 LINE L1 4136 6164 0 12261 179 70 17 chrX 70600193 70600506 -91999424 + L1PB1 LINE L1 6201 6496 -371 369 62 0 0 chrX 70600506 70600554 -91999376 + (TA)n Simple_repeat Simple_repeat 2 49 0 1345 197 23 13 chrX 70600557 70600862 -91999068 + L1P3 LINE L1 1286 1593 -4868 214 118 78 0 chrX 70600862 70600964 -91998966 + (TA)n Simple_repeat Simple_repeat 1 110 0 2406 133 3 3 chrX 70600984 70601367 -91998563 + L1PB1 LINE L1 6483 6865 -2 349 254 0 0 chrX 70602734 70602801 -91997129 - MER5A DNA MER1_type -1 188 122 518 122 0 0 chrX 70602804 70602886 -91997044 - L1P3 LINE L1 -4908 1553 1472 585 248 8 8 chrX 70602895 70603012 -91996918 - MER5A DNA MER1_type -72 117 1 2036 136 0 7 chrX 70603052 70603354 -91996576 + AluSx SINE Alu 1 300 -12 2126 100 0 4 chrX 70603490 70603769 -91996161 - AluSg SINE Alu -32 278 1 556 303 240 6 chrX 70603772 70604138 -91995792 - L2 LINE L2 -1531 1783 1332 6717 175 13 16 chrX 70604171 70606920 -91993010 + L1P3 LINE L1 3 2787 -3674 4548 98 11 0 chrX 70606928 70607579 -91992351 + L1PA8A LINE L1 5472 6129 -2 339 324 19 0 chrX 70607579 70607684 -91992246 - L2 LINE L2 -1969 1345 1239 189 107 0 0 chrX 70609306 70609334 -91990596 + (A)n Simple_repeat Simple_repeat 1 28 0 2190 77 17 7 chrX 70609573 70609860 -91990070 + AluSg SINE Alu 1 290 -20 23 33 0 0 chrX 70609963 70609993 -91989937 + AT_rich Low_complexity Low_complexity 1 30 0 2555 163 48 0 chrX 70611101 70611560 -91988370 - L1PA16 LINE L1 -11 7593 7113 25468 135 12 69 chrX 70611561 70618076 -91981854 - L1PA8 LINE L1 -18 6154 7 899 186 0 22 chrX 70618085 70618268 -91981662 - L1PA16 LINE L1 -480 7124 6946 * 8963 248 47 27 chrX 70618248 70621532 -91978398 - L1PA16 LINE L1 -961 6623 3275 306 344 108 36 chrX 70621796 70622046 -91977884 - L1M2 LINE L1 -5786 1063 796 233 296 50 100 chrX 70622298 70622558 -91977372 - L1PA16 LINE L1 -5795 1786 1540 212 220 17 34 chrX 70622803 70622862 -91977068 + GA-rich Low_complexity Low_complexity 4 61 0 312 376 19 0 chrX 70622932 70623094 -91976836 - MIR SINE MIR -2 260 96 364 343 97 20 chrX 70623095 70623343 -91976587 - L1MC4a LINE L1 -1877 5931 5665 368 318 107 19 chrX 70623377 70623638 -91976292 - L1MC4a LINE L1 -1331 4815 4532 376 310 0 4 chrX 70623832 70624006 -91975924 + MIR SINE MIR 14 249 -13 29 0 0 0 chrX 70624048 70624077 -91975853 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chrX 70624590 70624611 -91975319 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 279 179 18 0 chrX 70624613 70624669 -91975261 + MLT1A1 LTR MaLR 309 365 0 40586 53 2 1 chrX 70624793 70630941 -91968989 - L1PA4 LINE L1 -1 6154 4 2625 102 3 0 chrX 70631162 70631516 -91968414 - THE1A LTR MaLR 0 355 1 262 259 74 19 chrX 70631642 70631750 -91968180 + MIR SINE MIR 93 206 -56 2123 204 2 2 chrX 70631919 70632385 -91967545 - L1P LINE L1 -1280 4866 4401 2272 115 14 0 chrX 70632404 70632760 -91967170 - L1PB1 LINE L1 -2 6149 5789 290 183 98 0 chrX 70632776 70632858 -91967072 - L1MC4 LINE L1 -1339 6703 6614 * 3884 191 14 11 chrX 70632849 70634420 -91965510 - L1PB1 LINE L1 -360 5791 4279 2028 166 20 62 chrX 70634407 70634895 -91965035 + L1PB2 LINE L1 4857 5328 -840 * 1837 64 0 0 chrX 70634895 70635128 -91964802 - L1PA8 LINE L1 0 6172 5940 2028 166 20 62 chrX 70635128 70635267 -91964663 + L1PB2 LINE L1 5328 5471 -697 7774 19 6 0 chrX 70635267 70636353 -91963577 - L1PA2 LINE L1 0 6155 5068 8054 35 0 0 chrX 70636353 70637364 -91962566 + L1PA2 LINE L1 4059 5069 -1077 3147 179 14 37 chrX 70637353 70638050 -91961880 + L1PB2 LINE L1 5454 6132 -19 * 2232 180 0 0 chrX 70638068 70638462 -91961468 + L1PA13 LINE L1 5766 6159 -4 23 33 0 0 chrX 70638652 70638682 -91961248 + AT_rich Low_complexity Low_complexity 1 30 0 5961 169 11 3 chrX 70638696 70640805 -91959125 + L1PB1 LINE L1 4008 6131 -20 1526 185 74 57 chrX 70640807 70641212 -91958718 - MSTA LTR MaLR -16 412 1 9055 161 7 35 chrX 70641216 70642833 -91957097 - MSTA-int LTR MaLR -6 1574 3 1835 188 94 10 chrX 70642835 70643228 -91956702 - MSTA LTR MaLR 0 428 3 257 313 104 26 chrX 70643506 70643621 -91956309 + L2 LINE L2 3189 3312 -1 4924 201 35 10 chrX 70644134 70645221 -91954709 + L1MC3 LINE L1 6663 7776 -9 2536 192 48 4 chrX 70645501 70645996 -91953934 + LTR53 LTR ERVL 1 517 -2 317 143 0 71 chrX 70646387 70646457 -91953473 + L1MC1 LINE L1 6136 6200 -133 1727 135 20 101 chrX 70646459 70646807 -91953123 + L1PA15 LINE L1 5762 6081 -84 41712 50 23 3 chrX 70646809 70652842 -91947088 + L1PA3 LINE L1 2 5980 -175 514 180 0 10 chrX 70652842 70652942 -91946988 + L1PA15 LINE L1 6067 6165 0 41712 50 23 3 chrX 70652942 70653122 -91946808 + L1PA3 LINE L1 5980 6155 0 2098 238 39 23 chrX 70653094 70653742 -91946188 + L1M4c LINE L1 1058 1715 -4669 * 257 354 54 0 chrX 70653799 70653929 -91946001 + L1PA12 LINE L1 1720 1856 -5725 7416 208 16 15 chrX 70653950 70656861 -91943069 + L1PA12 LINE L1 1607 4521 -3063 5239 120 18 0 chrX 70656866 70657633 -91942297 + L1PA11 LINE L1 5392 6172 -2 10292 190 18 23 chrX 70657640 70658806 -91941124 + L1PA12 LINE L1 4511 5659 -1925 1714 170 32 0 chrX 70658806 70659083 -91940847 - AluSx SINE Alu -23 289 4 10292 190 18 23 chrX 70659083 70660225 -91939705 + L1PA12 LINE L1 5659 6806 -778 2191 80 13 0 chrX 70660225 70660524 -91939406 + L1PA7 LINE L1 5848 6150 -4 1777 153 37 7 chrX 70660534 70660829 -91939101 - L1PA10 LINE L1 -66 6102 5799 * 2869 172 64 3 chrX 70660826 70661691 -91938239 - L1M1 LINE L1 -631 5674 4741 231 36 0 0 chrX 70661696 70661724 -91938206 + (AAGTG)n Simple_repeat Simple_repeat 5 32 0 229 426 0 0 chrX 70661740 70661909 -91938021 + L2 LINE L2 2361 2529 -785 4029 89 29 0 chrX 70661919 70662479 -91937451 - L1PA7 LINE L1 -4 6150 5575 14000 98 9 7 chrX 70662482 70664561 -91935369 - L1PA7 LINE L1 -959 5187 3105 4236 110 10 7 chrX 70664580 70665188 -91934742 + HSMAR1 DNA Mariner 1 610 -677 317 306 15 15 chrX 70665188 70665322 -91934608 - L2 LINE L2 -805 2509 2376 4751 104 6 12 chrX 70665335 70666005 -91933925 + HSMAR1 DNA Mariner 620 1285 -2 508 343 125 43 chrX 70666010 70666717 -91933213 + L2 LINE L2 2538 3310 -3 518 248 101 23 chrX 70667064 70667282 -91932648 - L1M4 LINE L1 -1560 4586 4352 * 28145 130 24 58 chrX 70667270 70670850 -91929080 - L1PA7 LINE L1 -3 6151 2899 1909 141 3 33 chrX 70670850 70670968 -91928962 + AluSq SINE Alu 1 121 -192 2916 6 0 0 chrX 70670968 70671282 -91928648 - AluYb8 SINE Alu -4 314 1 1909 141 3 33 chrX 70671282 70671520 -91928410 + AluSq SINE Alu 121 313 0 28145 130 24 58 chrX 70671520 70674323 -91925607 - L1PA7 LINE L1 -3255 2899 1 1865 210 38 8 chrX 70674324 70674795 -91925135 - L1M4 LINE L1 -1741 4405 3921 * 2602 235 23 16 chrX 70674792 70675493 -91924437 + L1MB1 LINE L1 4590 5295 -851 195 146 0 0 chrX 70675493 70675534 -91924396 + (TG)n Simple_repeat Simple_repeat 2 42 0 1461 191 24 74 chrX 70675535 70675912 -91924018 + L1MB1 LINE L1 5807 6164 -4 200 213 0 0 chrX 70675950 70675997 -91923933 + (TA)n Simple_repeat Simple_repeat 2 48 0 2967 144 15 6 chrX 70676662 70677196 -91922734 - L1MA3 LINE L1 0 7724 7186 1160 22 0 0 chrX 70677196 70677321 -91922609 - L1PA2 LINE L1 -2 6153 6019 654 13 0 0 chrX 70677321 70677397 -91922533 + L1PA2 LINE L1 5825 5900 -255 * 11974 210 35 6 chrX 70677395 70678463 -91921467 - L1MA3 LINE L1 -526 7198 6163 270 0 0 0 chrX 70678463 70678493 -91921437 + (TTG)n Simple_repeat Simple_repeat 1 30 0 11974 210 35 6 chrX 70678493 70680814 -91919116 - L1MA3 LINE L1 -1561 6163 3705 399 140 0 0 chrX 70680816 70680873 -91919057 - AluJ/FLAM SINE Alu -245 57 1 13442 180 24 14 chrX 70680874 70683277 -91916653 - L1MA3 LINE L1 -5133 2432 5 22 35 0 0 chrX 70683392 70683421 -91916509 + AT_rich Low_complexity Low_complexity 1 29 0 247 268 122 16 chrX 70683442 70683565 -91916365 + L1M4b LINE L1 1 136 -6723 * 444 184 35 35 chrX 70683536 70683650 -91916280 + L1MB8 LINE L1 6868 6981 -8 673 185 68 146 chrX 70683655 70683793 -91916137 + L1MB7 LINE L1 5678 5780 -404 1501 154 0 0 chrX 70683793 70684007 -91915923 + AluSx SINE Alu 5 218 -94 673 185 68 146 chrX 70684007 70684176 -91915754 + L1MB7 LINE L1 5780 5961 -223 2468 224 68 27 chrX 70684288 70685088 -91914842 + L1ME1 LINE L1 5260 6159 -7 511 265 101 68 chrX 70685163 70685601 -91914329 + L1MC4 LINE L1 7588 8039 -3 333 266 82 25 chrX 70685701 70685859 -91914071 + L1ME4a LINE L1 5380 5546 -575 483 299 52 8 chrX 70685863 70685997 -91913933 + L2 LINE L2 3174 3313 0 333 235 61 23 chrX 70686436 70686568 -91913362 + L1ME4a LINE L1 5967 6103 -18 371 340 66 17 chrX 70686689 70686930 -91913000 + L1M4 LINE L1 4399 4651 -1495 296 133 0 0 chrX 70686935 70686980 -91912950 + Alu SINE Alu 244 288 -12 25 0 0 0 chrX 70687112 70687137 -91912793 + AT_rich Low_complexity Low_complexity 1 25 0 221 0 35 0 chrX 70687441 70687470 -91912460 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1206 43 0 0 chrX 70687470 70687608 -91912322 - L1PA6 LINE L1 -16 6138 6001 21 0 0 0 chrX 70687618 70687639 -91912291 + AT_rich Low_complexity Low_complexity 1 21 0 213 154 0 0 chrX 70687732 70687771 -91912159 + T-rich Low_complexity Low_complexity 1 39 0 554 183 29 36 chrX 70688008 70688145 -91911785 + L1MA3 LINE L1 14 149 -7416 * 13978 175 42 19 chrX 70688121 70688167 -91911763 + L1MA3 LINE L1 1103 1146 -6578 1759 194 0 3 chrX 70688167 70688466 -91911464 + AluJb SINE Alu 1 298 -14 13978 175 42 19 chrX 70688466 70690383 -91909547 + L1MA3 LINE L1 1146 3019 -4705 9325 29 0 0 chrX 70690383 70692186 -91907744 - L1PA3 LINE L1 0 6155 4353 13978 175 42 19 chrX 70692186 70692326 -91907604 + L1MA3 LINE L1 3019 3154 -4570 2859 89 37 17 chrX 70692326 70692731 -91907199 - L1PA8 LINE L1 -7 6165 5753 13978 175 42 19 chrX 70692731 70694467 -91905463 + L1MA3 LINE L1 3154 4850 -2874 1840 128 11 7 chrX 70694467 70694788 -91905142 - AluSx SINE Alu 0 323 2 13978 175 42 19 chrX 70694788 70697413 -91902517 + L1MA3 LINE L1 4850 7724 0 1649 245 56 26 chrX 70697524 70697993 -91901937 + L1MD2 LINE L1 1127 1580 -5064 2827 160 2 12 chrX 70697993 70698492 -91901438 + L1MA4 LINE L1 5806 6299 -1 1649 245 56 26 chrX 70698492 70698947 -91900983 + L1MD2 LINE L1 1580 3959 -2685 1606 195 3 27 chrX 70698952 70699125 -91900805 + L1MB7 LINE L1 5844 6007 -177 2383 166 25 44 chrX 70699125 70699559 -91900371 + MSTB LTR MaLR 1 426 0 1606 195 3 27 chrX 70699559 70699718 -91900212 + L1MB7 LINE L1 6007 6168 -16 3733 206 50 29 chrX 70699721 70700174 -91899756 + L1MD2 LINE L1 5937 6379 -478 2258 106 89 14 chrX 70700174 70700523 -91899407 + THE1C LTR MaLR 1 375 0 3733 206 50 29 chrX 70700523 70700956 -91898974 + L1MD2 LINE L1 6379 6841 -16 21 0 0 0 chrX 70701046 70701067 -91898863 + AT_rich Low_complexity Low_complexity 1 21 0 412 291 115 61 chrX 70701091 70701404 -91898526 + L1MC/D LINE L1 5318 5647 -2161 866 199 76 0 chrX 70701980 70702151 -91897779 + MIR SINE MIR 72 255 -7 338 320 58 44 chrX 70702961 70703167 -91896763 - L1ME LINE L1 -660 5510 5302 3577 206 36 23 chrX 70703464 70704483 -91895447 + L1PB3 LINE L1 3980 5113 -1033 18237 188 30 29 chrX 70704490 70707069 -91892861 + L1PA11 LINE L1 10 2584 -3905 18237 153 32 11 chrX 70707069 70708375 -91891555 + L1PA11 LINE L1 2569 3846 -2643 4513 126 103 15 chrX 70708375 70709092 -91890838 + LTR17 LTR ERV1 1 780 0 18237 153 32 11 chrX 70709092 70709931 -91889999 + L1PA11 LINE L1 3846 4666 -1823 1793 130 17 17 chrX 70709931 70710224 -91889706 + AluSg1 SINE Alu 14 306 -3 18237 153 32 11 chrX 70710224 70711967 -91887963 + L1PA11 LINE L1 4666 6489 0 18237 188 30 29 chrX 70711967 70711984 -91887946 + L1PA11 LINE L1 2584 6489 0 5862 116 15 33 chrX 70711979 70713046 -91886884 + L1PB3 LINE L1 5100 6149 -5 * 2211 77 0 3 chrX 70713327 70713644 -91886286 - AluY SINE Alu 0 316 1 929 253 125 70 chrX 70713722 70713897 -91886033 - L1MC4a LINE L1 -1730 6078 5914 2228 104 3 19 chrX 70713897 70714214 -91885716 - AluSp SINE Alu 0 313 2 929 253 125 70 chrX 70714214 70714639 -91885291 - L1MC4a LINE L1 -1894 5914 5445 342 0 0 0 chrX 70714910 70714948 -91884982 + (CA)n Simple_repeat Simple_repeat 2 39 0 405 303 33 33 chrX 70714970 70715122 -91884808 - MIR SINE MIR -79 183 32 445 296 63 6 chrX 70715451 70715610 -91884320 - MIR SINE MIR 0 262 95 181 378 92 0 chrX 70715637 70715735 -91884195 + MIR SINE MIR 33 139 -69 413 321 0 0 chrX 70716520 70716632 -91883298 + MIR SINE MIR 21 132 -76 530 322 42 57 chrX 70716844 70717127 -91882803 + L3 LINE CR1 987 1264 -313 2589 133 32 65 chrX 70717127 70717570 -91882360 - MSTC LTR MaLR 0 428 1 530 322 42 57 chrX 70717570 70717687 -91882243 + L3 LINE CR1 1264 1381 -196 684 213 88 15 chrX 70718790 70719089 -91880841 - MLT1A1 LTR MaLR 0 365 1 462 264 37 37 chrX 70720234 70720397 -91879533 - L2 LINE L2 -427 2887 2725 655 249 12 57 chrX 70720701 70720946 -91878984 - L2 LINE L2 -764 2550 2317 376 199 81 29 chrX 70720946 70721082 -91878848 - L2 LINE L2 -1903 1411 1269 339 293 220 23 chrX 70722155 70722250 -91877680 + L2 LINE L2 3003 3078 -235 3800 110 67 0 chrX 70722250 70722769 -91877161 - MER41C LTR ERV1 0 554 1 339 293 220 23 chrX 70722769 70722932 -91876998 + L2 LINE L2 3078 3312 -1 224 197 14 42 chrX 70723378 70723449 -91876481 + G-rich Low_complexity Low_complexity 6 74 0 1405 117 10 0 chrX 70723989 70724194 -91875736 - MER4A LTR ERV1 0 664 458 5984 150 95 21 chrX 70724305 70725187 -91874743 + MER4B-int LTR ERV1 199 1015 -5743 4416 90 29 64 chrX 70725187 70725878 -91874052 + PABL_B LTR ERV1 1 667 0 5984 150 95 21 chrX 70725878 70726130 -91873800 + MER4B-int LTR ERV1 1015 1247 -5511 3224 31 21 23 chrX 70726130 70726514 -91873416 + L1PA3 LINE L1 5773 6155 0 5984 150 95 21 chrX 70726514 70726881 -91873049 + MER4B-int LTR ERV1 1247 1912 -4846 1625 139 45 24 chrX 70726885 70727173 -91872757 + MER4A LTR ERV1 371 664 0 220 229 14 29 chrX 70727712 70727782 -91872148 + C-rich Low_complexity Low_complexity 6 74 0 353 290 220 23 chrX 70728228 70728391 -91871539 - L2 LINE L2 -1 3312 3182 3800 110 67 0 chrX 70728391 70728910 -91871020 + MER41C LTR ERV1 1 554 0 353 290 220 23 chrX 70728910 70729005 -91870925 - L2 LINE L2 -131 3182 3003 376 199 81 29 chrX 70730078 70730214 -91869716 + L2 LINE L2 1269 1411 -1903 655 249 12 57 chrX 70730214 70730459 -91869471 + L2 LINE L2 2317 2550 -764 462 264 37 37 chrX 70730763 70730926 -91869004 + L2 LINE L2 2725 2887 -427 2209 198 73 80 chrX 70731385 70732113 -91867817 + MER50 LTR ERV1 12 734 0 7478 64 8 0 chrX 70732291 70733657 -91866273 + L1PA8 LINE L1 4834 6172 0 236 253 48 36 chrX 70734298 70734381 -91865549 + L1ME LINE L1 5377 5460 -706 347 326 26 47 chrX 70735723 70735913 -91864017 - MIR SINE MIR -3 259 74 182 184 20 0 chrX 70736078 70736114 -91863816 + CT-rich Low_complexity Low_complexity 2 41 -10 1888 138 45 3 chrX 70736114 70736405 -91863525 - AluJb SINE Alu -9 303 1 182 184 20 0 chrX 70736405 70736417 -91863513 + CT-rich Low_complexity Low_complexity 41 51 0 221 220 0 34 chrX 70736736 70736795 -91863135 - L2 LINE L2 0 3313 3257 184 300 50 58 chrX 70736877 70736997 -91862933 + L2 LINE L2 3189 3307 -6 27465 106 6 18 chrX 70737049 70743503 -91856427 + L1PA7 LINE L1 3 6454 -15 1020 179 64 138 chrX 70744270 70744662 -91855268 - MLT1A1 LTR MaLR 0 365 3 216 0 0 0 chrX 70745423 70745447 -91854483 + (T)n Simple_repeat Simple_repeat 1 24 0 280 321 46 4 chrX 70745730 70745970 -91853960 - L1M4 LINE L1 -3437 2709 2460 2298 100 0 3 chrX 70746691 70747001 -91852929 - AluSc SINE Alu 0 309 1 192 97 0 0 chrX 70747325 70747356 -91852574 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1383 213 10 34 chrX 70747356 70747647 -91852283 - AluJb SINE Alu -28 284 1 1998 110 7 31 chrX 70747738 70748073 -91851857 + AluSx SINE Alu 1 328 0 2988 150 27 47 chrX 70748677 70748907 -91851023 + L1MB2 LINE L1 5585 5818 -353 2194 121 0 7 chrX 70748907 70749204 -91850726 - AluSx SINE Alu -16 296 2 2988 150 27 47 chrX 70749204 70749565 -91850365 + L1MB2 LINE L1 5818 6164 -7 480 313 243 33 chrX 70749619 70750654 -91849276 + L2 LINE L2 1784 3038 -234 2006 120 0 7 chrX 70751246 70751547 -91848383 - AluJb SINE Alu -13 299 1 731 239 6 6 chrX 70751865 70752024 -91847906 + MER5B DNA MER1_type 2 160 -18 340 275 0 44 chrX 70753156 70753247 -91846683 + L2 LINE L2 3226 3312 -1 2103 137 0 9 chrX 70754165 70754480 -91845450 - AluJb SINE Alu 0 312 1 1788 163 3 17 chrX 70755291 70755585 -91844345 + AluJb SINE Alu 1 290 -22 319 358 6 6 chrX 70755725 70755904 -91844026 + GA-rich Low_complexity Low_complexity 2 180 0 189 0 0 0 chrX 70756612 70756633 -91843297 + (A)n Simple_repeat Simple_repeat 1 21 0 1452 103 0 5 chrX 70756661 70756855 -91843075 - AluSg/x SINE Alu -16 296 104 24058 124 15 73 chrX 70756855 70761752 -91838178 - L1P LINE L1 -1523 4623 12 1800 181 180 62 chrX 70762611 70763190 -91836740 + MLT1E1 LTR MaLR 1 647 -7 938 213 16 7 chrX 70763197 70763474 -91836456 + MLT1E1-int LTR MaLR 1 398 -973 296 146 0 0 chrX 70763630 70763685 -91836245 + MLT1D LTR MaLR 449 503 -2 1789 245 59 4 chrX 70763720 70764214 -91835716 - MER97a DNA MER1_type? -372 522 2 4707 181 35 20 chrX 70764433 70764859 -91835071 - L1PA16 LINE L1 -18 6145 5727 1972 140 0 4 chrX 70764859 70765137 -91834793 - AluSx SINE Alu -19 293 17 4707 181 35 20 chrX 70765137 70766633 -91833297 - L1PA16 LINE L1 -436 5727 4140 617 260 25 20 chrX 70766633 70766829 -91833101 - MLT1J2 LTR MaLR -253 197 1 5570 178 36 40 chrX 70766990 70769088 -91830842 - L1MA8 LINE L1 -10 6281 4188 4129 35 0 0 chrX 70769088 70769608 -91830322 + L1PA4 LINE L1 5660 6182 0 5570 178 36 40 chrX 70769608 70769799 -91830131 - L1MA8 LINE L1 -2103 4188 3998 21 0 0 0 chrX 70769804 70769825 -91830105 + AT_rich Low_complexity Low_complexity 1 21 0 6131 151 26 81 chrX 70769825 70771238 -91828692 - L1MA1 LINE L1 0 7721 6320 703 134 5 3 chrX 70771238 70771459 -91828471 + AluSx SINE Alu 11 295 -17 6131 151 26 81 chrX 70771459 70772582 -91827348 - L1MA1 LINE L1 -1401 6320 5137 2471 105 40 6 chrX 70772584 70772936 -91826994 - THE1B LTR MaLR 0 364 1 9185 135 62 2 chrX 70772936 70774426 -91825504 - THE1B-int LTR MaLR 0 1580 1 2646 118 0 0 chrX 70774426 70774790 -91825140 - THE1B LTR MaLR 0 364 1 3258 183 61 7 chrX 70774795 70775627 -91824303 - L1MA1 LINE L1 -2431 5134 4258 10743 203 12 7 chrX 70775642 70775999 -91823931 - L1PB1 LINE L1 -1 6866 6512 228 35 0 0 chrX 70775999 70776028 -91823902 + (TA)n Simple_repeat Simple_repeat 2 30 0 10743 203 12 7 chrX 70776028 70779245 -91820685 - L1PB1 LINE L1 -355 6512 3278 4346 215 55 10 chrX 70779243 70781234 -91818696 - L1PB1 LINE L1 -4614 2249 8 * 15367 195 64 27 chrX 70781261 70785357 -91814573 - L1MA1 LINE L1 -3301 4264 12 1734 156 14 3 chrX 70785354 70785714 -91814216 - L1 LINE L1 -2130 4016 3653 * 710 236 19 19 chrX 70786200 70786412 -91813518 + PABL_B LTR ERV1 456 667 0 1012 204 115 3 chrX 70786413 70786727 -91813203 - L1 LINE L1 -2486 3660 3312 1549 146 0 0 chrX 70786732 70786978 -91812952 - MER4B LTR ERV1 -4 606 361 28 29 0 0 chrX 70786978 70787013 -91812917 + AT_rich Low_complexity Low_complexity 1 35 0 5547 168 21 11 chrX 70787013 70787368 -91812562 - L1PB1 LINE L1 -8 6143 5793 564 115 0 0 chrX 70787368 70787472 -91812458 + (TA)n Simple_repeat Simple_repeat 2 105 0 5547 168 21 11 chrX 70787472 70788368 -91811562 - L1PB1 LINE L1 -358 5793 4869 197 33 33 0 chrX 70788368 70788398 -91811532 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5547 168 21 11 chrX 70788398 70788959 -91810971 - L1PB1 LINE L1 -1282 4869 4315 876 28 0 0 chrX 70788958 70789065 -91810865 + L1P LINE L1 1780 1886 -4260 * 1198 186 30 4 chrX 70989065 70989302 -91610628 - L1M2 LINE L1 -4285 2564 2322 19801 159 42 42 chrX 70989302 70991337 -91608593 + L1P LINE L1 13 2047 -4099 180 0 0 0 chrX 70991337 70991357 -91608573 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 19801 159 42 42 chrX 70991357 70991942 -91607988 + L1P LINE L1 2047 2631 -3515 2155 129 0 0 chrX 70991942 70992236 -91607694 - AluSg SINE Alu -16 294 1 19801 159 42 42 chrX 70992236 70993605 -91606325 + L1P LINE L1 2630 4003 -2143 519 245 10 0 chrX 70993605 70993707 -91606223 + AluJb SINE Alu 204 306 -6 267 273 133 16 chrX 70993942 70994070 -91605860 + MIR3 SINE MIR 3 145 -63 1319 273 50 35 chrX 70995115 70995631 -91604299 + L2 LINE L2 2587 3094 -219 2492 139 13 11 chrX 70995631 70996005 -91603925 + THE1C LTR MaLR 1 375 0 10301 120 31 60 chrX 70996006 70997631 -91602299 + THE1C-int LTR MaLR 2 1580 0 2883 91 11 11 chrX 70997631 70998006 -91601924 + THE1C LTR MaLR 1 375 0 1319 273 50 35 chrX 70998006 70998203 -91601727 + L2 LINE L2 3093 3312 -1 429 325 85 27 chrX 70998281 70998469 -91601461 - MIR3 SINE MIR -9 199 1 280 336 51 36 chrX 70999133 70999270 -91600660 - L2 LINE L2 -9 3263 3125 248 347 83 65 chrX 70999390 70999606 -91600324 - L2 LINE L2 -183 3089 2870 497 312 19 0 chrX 70999644 70999798 -91600132 - MER117 DNA MER1_type -40 157 1 265 360 8 16 chrX 71000009 71000134 -91599796 - L2 LINE L2 -607 2707 2584 182 388 8 23 chrX 71000907 71001036 -91598894 - MIR SINE MIR -102 160 34 395 343 41 0 chrX 71001136 71001282 -91598648 - L2 LINE L2 -9 3263 3112 182 333 0 0 chrX 71001825 71001876 -91598054 - L2 LINE L2 -11 3261 3211 555 250 103 26 chrX 71002110 71002342 -91597588 - MLT1K LTR MaLR -4 584 335 631 284 33 6 chrX 71002769 71002952 -91596978 + MIR SINE MIR 18 205 -57 663 185 0 68 chrX 71002961 71003107 -91596823 - MER119 DNA MER1_type 0 583 448 549 242 75 8 chrX 71003099 71003219 -91596711 - MER119 DNA MER1_type -449 134 7 * 1904 162 21 29 chrX 71005533 71005873 -91594057 - MER58B DNA MER1_type -4 337 1 317 310 113 74 chrX 71005873 71006102 -91593828 + L3 LINE CR1 1306 1543 -34 332 258 80 70 chrX 71008470 71008613 -91591317 + MIR SINE MIR 12 154 -62 202 49 24 49 chrX 71008853 71008894 -91591036 + (TTA)n Simple_repeat Simple_repeat 3 42 0 730 30 0 0 chrX 71008894 71008986 -91590944 + L1PA4 LINE L1 5903 5994 -169 24 0 0 0 chrX 71009522 71009546 -91590384 + AT_rich Low_complexity Low_complexity 1 24 0 259 309 31 68 chrX 71009609 71009771 -91590159 + L3 LINE CR1 373 528 -1049 608 192 33 0 chrX 71009798 71009918 -91590012 - MIR SINE MIR -16 246 123 1207 290 266 17 chrX 71010206 71010924 -91589006 + L3 LINE CR1 588 1484 -93 1058 137 60 16 chrX 71011014 71011196 -91588734 - AluJo SINE Alu -15 297 108 658 260 89 0 chrX 71011295 71011464 -91588466 - MIR SINE MIR -10 252 69 211 260 177 10 chrX 71011768 71011864 -91588066 - MIR3 SINE MIR -4 204 93 338 294 132 15 chrX 71012058 71012194 -91587736 + MIR SINE MIR 2 153 -109 267 325 121 13 chrX 71012183 71012340 -91587590 - L2 LINE L2 -944 2370 2197 * 2434 155 8 2 chrX 71012347 71012748 -91587182 - L1MA4 LINE L1 -16 6284 5882 1167 159 21 0 chrX 71012748 71012937 -91586993 - MER82 DNA MER2_type -460 193 1 423 304 80 26 chrX 71012964 71013097 -91586833 + L1ME4a LINE L1 5264 5388 -733 2273 104 0 3 chrX 71013097 71013404 -91586526 + AluSx SINE Alu 3 308 -4 423 304 80 26 chrX 71013404 71013583 -91586347 + L1ME4a LINE L1 5388 5593 -528 328 238 100 33 chrX 71013604 71013814 -91586116 + L1ME4a LINE L1 5657 5880 -241 199 329 12 24 chrX 71014191 71014276 -91585654 - L2 LINE L2 -212 3060 2977 250 259 19 0 chrX 71016015 71016069 -91583861 + L2 LINE L2 3205 3259 -13 266 309 64 18 chrX 71016080 71016190 -91583740 - L2 LINE L2 -20 3252 3138 299 319 69 23 chrX 71016346 71016562 -91583368 - L2 LINE L2 -1524 1790 1565 496 263 45 0 chrX 71017789 71017922 -91582008 - MIR SINE MIR -1 261 123 196 245 20 0 chrX 71019115 71019164 -91580766 + MIR3 SINE MIR 151 200 -8 5608 105 26 17 chrX 71020820 71022099 -91577831 - L1PA8A LINE L1 -14 6432 4952 11595 131 17 41 chrX 71022101 71024322 -91575608 + L1PA8 LINE L1 6 2212 -4249 5876 109 95 106 chrX 71024322 71025894 -91574036 + pTR5 LTR ERV1 743 2438 0 7658 138 8 0 chrX 71025897 71027112 -91572818 + L1PA8 LINE L1 2209 3433 -3028 9306 129 11 0 chrX 71027112 71029271 -91570659 + L1PA8 LINE L1 4311 6487 0 20150 164 14 15 chrX 71029271 71029940 -91569990 - L1PA8A LINE L1 -1500 4961 4293 2327 85 0 3 chrX 71029940 71030234 -91569696 - AluY SINE Alu -18 293 1 20150 164 14 15 chrX 71030234 71034459 -91565471 - L1PA8A LINE L1 -2168 4293 9 295 326 0 16 chrX 71034897 71035026 -91564904 + GA-rich Low_complexity Low_complexity 2 128 0 590 192 20 1 chrX 71035035 71035169 -91564761 + L1MD3 LINE L1 6839 6997 -809 * 3556 167 25 36 chrX 71035160 71035877 -91564053 + L1MC3 LINE L1 7077 7785 0 21 0 0 0 chrX 71035927 71035948 -91563982 + AT_rich Low_complexity Low_complexity 1 21 0 3328 55 0 0 chrX 71035982 71036365 -91563565 - L1PA3 LINE L1 -3 6152 5770 186 43 0 0 chrX 71036747 71036770 -91563160 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 33831 47 0 1 chrX 71036771 71042917 -91557013 - L1PA3 LINE L1 -8 6147 8 375 260 169 30 chrX 71042969 71043437 -91556493 + L1M4c LINE L1 673 3421 -2961 327 345 27 9 chrX 71044635 71044745 -91555185 + MIR3 SINE MIR 11 122 -86 496 205 0 0 chrX 71045014 71045097 -91554833 - FLAM_A SINE Alu -59 83 1 468 291 6 74 chrX 71045554 71045729 -91554201 + MIR3 SINE MIR 45 207 -1 22 35 0 0 chrX 71046746 71046775 -91553155 + AT_rich Low_complexity Low_complexity 1 29 0 417 277 54 0 chrX 71048331 71048443 -91551487 - MIR3 SINE MIR -39 169 52 292 340 5 113 chrX 71051913 71052125 -91547805 + L2 LINE L2 3014 3202 -70 218 301 117 0 chrX 71052153 71052256 -91547674 - L2 LINE L2 0 3313 3199 815 266 103 0 chrX 71055211 71055425 -91544505 - MIR SINE MIR -3 259 24 2293 116 9 29 chrX 71055521 71055865 -91544065 + MER1B DNA MER1_type 1 337 0 188 374 134 16 chrX 71056264 71056451 -91543479 - L2 LINE L2 -463 2851 2643 1809 208 9 7 chrX 71057683 71058107 -91541823 - L1PB3 LINE L1 -1198 4948 4524 * 5308 149 30 3 chrX 71058103 71059265 -91540665 + L1PB3 LINE L1 4962 6147 -7 29 0 0 0 chrX 71059265 71059294 -91540636 + AT_rich Low_complexity Low_complexity 1 29 0 216 406 7 14 chrX 71059455 71059593 -91540337 + L2 LINE L2 2916 3052 -220 3388 216 55 34 chrX 71060070 71061649 -91538281 + L1MCb LINE L1 -134 1484 -4850 1177 149 47 40 chrX 71061648 71061946 -91537984 + L1MCb LINE L1 1691 1966 -4460 * 2133 124 0 10 chrX 71061980 71062271 -91537659 + AluSg SINE Alu 1 288 -22 21 0 0 0 chrX 71062271 71062292 -91537638 + AT_rich Low_complexity Low_complexity 1 21 0 1399 192 50 8 chrX 71062301 71062766 -91537164 + L1MCb LINE L1 2127 2479 -3947 7766 243 65 37 chrX 71062777 71065191 -91534739 + L1PA15 LINE L1 1 2491 -4306 234 0 0 0 chrX 71065191 71065217 -91534713 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 34208 81 44 3 chrX 71065226 71071122 -91528808 - L1PA5 LINE L1 -6 6148 1 2663 250 24 5 chrX 71071124 71071881 -91528049 + L1PA15 LINE L1 2483 3253 -3544 * 4784 222 24 48 chrX 71071872 71072657 -91527273 + L1PA15 LINE L1 3596 4331 -2466 480 18 0 0 chrX 71072657 71072714 -91527216 + (CA)n Simple_repeat Simple_repeat 2 58 0 4784 222 24 48 chrX 71072714 71073394 -91526536 + L1PA15 LINE L1 4331 5026 -1771 22000 86 8 237 chrX 71073395 71075614 -91524316 - L1PA3 LINE L1 -1130 5016 2290 7479 35 1 0 chrX 71075614 71076754 -91523176 + L1PA3 LINE L1 5015 6155 0 22000 86 8 237 chrX 71076754 71076770 -91523160 - L1P LINE L1 -3856 2290 2272 5375 130 19 12 chrX 71076770 71078533 -91521397 + L1PA15 LINE L1 5033 6811 -5 22000 86 8 237 chrX 71078533 71078907 -91521023 - L1P LINE L1 -3874 2272 1814 11511 115 12 2 chrX 71078907 71081442 -91518488 - L1PA7 LINE L1 -1 6153 3580 * 11857 52 1 0 chrX 71081437 71083708 -91516222 + L1PA4 LINE L1 3883 6155 0 22000 86 8 237 chrX 71081442 71087593 -91512337 - L1P LINE L1 -4332 1814 12 318 255 28 7 chrX 71087647 71087788 -91512142 + L1M4 LINE L1 2737 2880 -3266 3799 72 6 0 chrX 71087789 71088286 -91511644 - L1PA7 LINE L1 -8 6146 5647 1010 39 0 0 chrX 71088286 71088414 -91511516 + L1P3 LINE L1 5478 5605 -549 * 1839 251 60 25 chrX 71088411 71088790 -91511140 + L1M4 LINE L1 2866 3230 -2916 2305 117 0 0 chrX 71088790 71089099 -91510831 + AluSg SINE Alu 1 309 -1 1839 251 60 25 chrX 71089099 71089472 -91510458 + L1M4 LINE L1 3230 3644 -2502 316 258 84 60 chrX 71089486 71089620 -91510310 + MIR SINE MIR 18 154 -81 1211 191 65 89 chrX 71089621 71089993 -91509937 + MLT1B LTR MaLR 1 363 -27 778 200 13 20 chrX 71090833 71090983 -91508947 - FAM SINE Alu -36 149 1 40706 54 2 2 chrX 71091016 71097159 -91502771 - L1PA3 LINE L1 -3 6152 9 21 0 0 0 chrX 71097583 71097604 -91502326 + AT_rich Low_complexity Low_complexity 1 21 0 704 272 12 0 chrX 71098007 71098176 -91501754 + MIR3 SINE MIR 34 204 -4 22 56 0 0 chrX 71098236 71098272 -91501658 + AT_rich Low_complexity Low_complexity 1 36 0 2131 117 0 3 chrX 71098295 71098593 -91501337 + AluY SINE Alu 1 297 -14 259 318 200 24 chrX 71099229 71099609 -91500321 + L2 LINE L2 2225 2671 -643 421 331 7 0 chrX 71101114 71101250 -91498680 + MIR SINE MIR 99 235 -27 253 304 0 0 chrX 71101486 71101555 -91498375 + MIR SINE MIR 72 140 -68 2222 75 58 0 chrX 71103445 71103738 -91496192 - AluY SINE Alu -1 310 1 1296 50 0 0 chrX 71104658 71104818 -91495112 - L1PA3 LINE L1 -3 6152 5993 21 0 0 0 chrX 71105873 71105894 -91494036 + AT_rich Low_complexity Low_complexity 1 21 0 7997 197 10 13 chrX 71105941 71108145 -91491785 - L1PA16 LINE L1 -77 6792 4592 2158 121 0 16 chrX 71108145 71108459 -91491471 - AluSc SINE Alu 0 309 1 7997 197 10 13 chrX 71108459 71109011 -91490919 - L1PA16 LINE L1 -2277 4592 4040 5603 95 9 17 chrX 71109014 71109056 -91490874 + L1PA10 LINE L1 5306 5347 -821 3560 81 2 0 chrX 71109056 71109523 -91490407 - L1PA6 LINE L1 -3 6151 5684 5603 95 9 17 chrX 71109523 71110345 -91489585 + L1PA10 LINE L1 5347 6163 -5 4970 249 42 14 chrX 71110376 71111316 -91488614 - L1PA16 LINE L1 -2812 4037 3125 2059 127 14 7 chrX 71111316 71111608 -91488322 - AluSx SINE Alu -18 294 1 4970 249 42 14 chrX 71111608 71113285 -91486645 - L1PA16 LINE L1 -3724 3125 1325 1148 190 38 0 chrX 71113486 71113789 -91486141 - L1 LINE L1 -2119 4027 3705 6399 221 5 3 chrX 71113794 71115494 -91484436 - L1PA16 LINE L1 -5480 1369 3 481 370 77 35 chrX 71116025 71116401 -91483529 + L2 LINE L2 2584 2975 -339 267 97 32 16 chrX 71116912 71116974 -91482956 + (TA)n Simple_repeat Simple_repeat 2 64 0 32 0 0 0 chrX 71117243 71117275 -91482655 + AT_rich Low_complexity Low_complexity 1 32 0 5977 161 10 7 chrX 71117275 71117460 -91482470 - L1MA3 LINE L1 0 6305 6122 1734 166 0 0 chrX 71117460 71117725 -91482205 - AluSx SINE Alu -12 300 36 5977 161 10 7 chrX 71117725 71119654 -91480276 - L1MA3 LINE L1 -183 6122 4182 2684 56 35 16 chrX 71119701 71120076 -91479854 - L1PA4 LINE L1 -3 6152 5771 * 11414 39 3 0 chrX 71120070 71122227 -91477703 - L1PA4 LINE L1 -4 6151 3990 16745 80 6 75 chrX 71122232 71123235 -91476695 - L1PA4 LINE L1 -3568 2578 1507 2686 33 0 0 chrX 71123235 71123540 -91476390 - AluY SINE Alu -6 305 1 16745 80 6 75 chrX 71123540 71125307 -91474623 - L1PA4 LINE L1 -4639 1507 1 9029 171 16 16 chrX 71125308 71128152 -91471778 - L1PA14 LINE L1 -39 6122 3281 1047 194 102 48 chrX 71128153 71128447 -91471483 + THE1C LTR MaLR 29 338 -37 5102 82 0 0 chrX 71128450 71129129 -91470801 - L1PA6 LINE L1 0 6154 5476 21004 87 9 3 chrX 71129219 71133169 -91466761 - L1PA6 LINE L1 -11 6143 2176 * 31584 55 1 1 chrX 71133165 71139312 -91460618 - L1PA4 LINE L1 -1 6154 3 13377 143 9 19 chrX 71139313 71141516 -91458414 - L1PA6 LINE L1 -3957 2189 9 255 163 0 41 chrX 71141516 71141565 -91458365 + THE1C LTR MaLR 382 428 0 8920 164 17 47 chrX 71141567 71143191 -91456739 + THE1C-int LTR MaLR 3 1576 -4 1433 170 158 24 chrX 71143195 71143524 -91456406 + THE1C LTR MaLR 1 373 -2 9767 191 23 12 chrX 71143534 71146712 -91453218 - L1PA12 LINE L1 -2875 4709 1500 1187 223 5 0 chrX 71146710 71146934 -91452996 - L1PA12 LINE L1 -7351 230 6 * 5382 197 19 9 chrX 71146936 71147160 -91452770 - L1 LINE L1 -1952 4194 3974 2879 10 0 0 chrX 71147160 71147468 -91452462 - AluYb8 SINE Alu -10 308 1 5382 197 19 9 chrX 71147468 71148380 -91451550 - L1 LINE L1 -2172 3974 3047 * 16449 149 21 17 chrX 71148374 71151072 -91448858 - L1PA8 LINE L1 -3 7588 4847 2606 14 0 0 chrX 71151072 71151353 -91448577 - AluYb8 SINE Alu 0 318 38 16449 149 21 17 chrX 71151353 71152888 -91447042 - L1PA8 LINE L1 -2744 4847 3320 3571 237 45 28 chrX 71153573 71154676 -91445254 - L1MDb LINE L1 -4786 1620 480 378 0 0 0 chrX 71154991 71155033 -91444897 + (TA)n Simple_repeat Simple_repeat 2 43 0 228 35 0 0 chrX 71155854 71155883 -91444047 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 567 312 111 28 chrX 71155945 71156198 -91443732 - L3 LINE CR1 -475 1102 829 282 159 0 0 chrX 71156210 71156279 -91443651 + CT-rich Low_complexity Low_complexity 2 70 0 530 326 52 0 chrX 71158074 71158246 -91441684 + MIR SINE MIR 8 188 -74 384 22 0 0 chrX 71158246 71158291 -91441639 + (TC)n Simple_repeat Simple_repeat 2 46 0 234 0 0 0 chrX 71158290 71158316 -91441614 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 307 311 139 8 chrX 71158777 71158899 -91441031 + MIR3 SINE MIR 9 146 -62 299 197 0 30 chrX 71159231 71159297 -91440633 - L1M4 LINE L1 -866 5280 5217 2108 168 50 13 chrX 71159315 71159691 -91440239 - MLT1B LTR MaLR 0 390 1 2233 212 36 17 chrX 71159691 71160154 -91439776 - MLT1B-int LTR MaLR 0 1651 950 355 262 12 0 chrX 71160276 71160360 -91439570 - MLT1B-int LTR MaLR -971 764 680 2100 239 41 0 chrX 71160483 71161013 -91438917 - MLT1B-int LTR MaLR -702 669 21 293 219 0 0 chrX 71161109 71161191 -91438739 - L1M4c LINE L1 -5322 1062 981 1341 225 50 30 chrX 71161197 71161535 -91438395 - MLT1B LTR MaLR -45 345 1 3128 241 71 39 chrX 71161555 71162513 -91437417 - L1M4c LINE L1 -4794 1852 763 2106 122 0 3 chrX 71162513 71162820 -91437110 + AluSg SINE Alu 1 306 0 3128 241 71 39 chrX 71162820 71163606 -91436324 - L1M4c LINE L1 -5883 763 3 1229 211 59 13 chrX 71163604 71164038 -91435892 - L1MDa LINE L1 -3954 2586 2112 * 2455 124 34 22 chrX 71164276 71164632 -91435298 + THE1B LTR MaLR 2 361 -3 10797 116 31 38 chrX 71164635 71166225 -91433705 + THE1B-int LTR MaLR 1 1580 0 2172 148 32 51 chrX 71166225 71166555 -91433375 + THE1B LTR MaLR 1 325 -39 1949 127 7 23 chrX 71166555 71166854 -91433076 - AluSx SINE Alu -18 294 1 2172 148 32 51 chrX 71166854 71166894 -91433036 + THE1B LTR MaLR 325 364 0 241 324 108 0 chrX 71167045 71167156 -91432774 + MIR SINE MIR 140 262 0 198 0 0 0 chrX 71167282 71167304 -91432626 + (TTTTTA)n Simple_repeat Simple_repeat 4 25 0 1996 143 3 0 chrX 71167325 71167611 -91432319 - AluSx SINE Alu -25 287 1 371 267 93 25 chrX 71168490 71168651 -91431279 - L1MA9 LINE L1 -30 6282 6111 * 9628 144 5 152 chrX 71168650 71170859 -91429071 + L1PA16 LINE L1 1 1885 -4964 2563 137 70 7 chrX 71170859 71171262 -91428668 + MSTA LTR MaLR 1 428 0 867 129 27 0 chrX 71171262 71171409 -91428521 + MSTA-int LTR MaLR 1 151 -1500 * 5219 195 29 6 chrX 71171406 71172363 -91427567 + MSTA-int LTR MaLR 629 1607 -44 211 146 0 62 chrX 71172363 71172392 -91427538 + (T)n Simple_repeat Simple_repeat 1 27 -18 8164 28 8 0 chrX 71172392 71173794 -91426136 - L1PA3 LINE L1 -4 6151 4745 211 146 0 62 chrX 71173794 71173812 -91426118 + (T)n Simple_repeat Simple_repeat 27 45 0 41872 46 25 2 chrX 71173815 71177080 -91422850 - L1PA3 LINE L1 0 6155 2688 9050 65 4 1 chrX 71177080 71178148 -91421782 - MER11C LTR ERVK 0 1071 1 41872 46 25 2 chrX 71178148 71180886 -91419044 - L1PA3 LINE L1 -3467 2688 13 320 169 0 17 chrX 71180896 71180955 -91418975 + MSTA-int LTR MaLR 1594 1651 0 1555 198 48 45 chrX 71180955 71181276 -91418654 + MSTA LTR MaLR 1 320 -55 2470 139 8 5 chrX 71181276 71181650 -91418280 + THE1C LTR MaLR 1 375 0 10051 129 35 43 chrX 71181650 71183242 -91416688 + THE1C-int LTR MaLR 1 1580 0 2514 152 3 8 chrX 71183244 71183619 -91416311 + THE1C LTR MaLR 3 375 0 1555 198 48 45 chrX 71183619 71183667 -91416263 + MSTA LTR MaLR 320 375 0 1438 171 104 19 chrX 71183667 71183976 -91415954 + MSTA LTR MaLR 94 428 0 9253 221 15 29 chrX 71183976 71184264 -91415666 + L1PA16 LINE L1 1881 2172 -4677 2064 122 66 9 chrX 71184264 71184584 -91415346 - L1PA13 LINE L1 -8 6155 5818 9253 221 15 29 chrX 71184584 71188446 -91411484 + L1PA16 LINE L1 2172 5989 -860 257 0 0 29 chrX 71188456 71188490 -91411440 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2769 123 2 7 chrX 71188490 71188914 -91411016 + L1PA16 LINE L1 6062 6483 -386 255 61 0 0 chrX 71188916 71188949 -91410981 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 369 0 0 0 chrX 71188948 71188989 -91410941 + (GA)n Simple_repeat Simple_repeat 2 42 0 305 188 0 10 chrX 71188991 71189087 -91410843 + (TA)n Simple_repeat Simple_repeat 2 96 0 1826 191 11 5 chrX 71189088 71189470 -91410460 + L1PA16 LINE L1 6485 6868 -1 191 274 107 48 chrX 71189716 71189800 -91410130 - L3 LINE CR1 -196 1381 1293 1169 241 20 53 chrX 71190041 71190412 -91409518 + MLT2C1 LTR ERVL 1 428 -36 2128 114 3 3 chrX 71190935 71191224 -91408706 + AluSp SINE Alu 1 289 -24 3135 254 67 42 chrX 71191548 71192047 -91407883 + L1M4 LINE L1 10 495 -6151 1470 233 54 50 chrX 71192047 71192511 -91407419 - MER31B LTR ERV1 0 466 1 3135 254 67 42 chrX 71192511 71193649 -91406281 + L1M4 LINE L1 495 1603 -5043 8395 136 9 2 chrX 71193649 71194926 -91405004 + HSMAR1 DNA Mariner 1 1287 0 3135 254 67 42 chrX 71194926 71194951 -91404979 + L1M4 LINE L1 1603 1626 -5020 1709 175 0 24 chrX 71194951 71195248 -91404682 - AluJo SINE Alu -22 290 1 3135 254 67 42 chrX 71195248 71195677 -91404253 + L1M4 LINE L1 1626 2135 -4511 878 222 17 0 chrX 71195723 71195903 -91404027 - AluJb SINE Alu -109 203 21 930 177 60 110 chrX 71195917 71196353 -91403577 + L1M4 LINE L1 2246 2659 -3987 255 61 0 0 chrX 71196350 71196383 -91403547 + L1M3 LINE L1 5441 5473 -698 * 1171 228 100 56 chrX 71196384 71196814 -91403116 + MLT2B1 LTR ERVL 4 452 -68 369 213 29 7 chrX 71196827 71196963 -91402967 + (TA)n Simple_repeat Simple_repeat 1 139 0 259 0 0 0 chrX 71196967 71196996 -91402934 - MLT2B1 LTR ERVL -8 512 484 204 97 0 0 chrX 71197000 71197031 -91402899 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1008 172 33 37 chrX 71197043 71197258 -91402672 + L1M3 LINE L1 5467 5680 -491 650 126 45 0 chrX 71197256 71197367 -91402563 - L1MA9 LINE L1 -52 6260 6145 * 2438 240 68 4 chrX 71197369 71197529 -91402401 + L1M4 LINE L1 2731 2879 -3765 440 72 14 0 chrX 71197529 71197598 -91402332 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2438 240 68 4 chrX 71197598 71198190 -91401740 + L1M4 LINE L1 2879 3531 -3113 805 139 0 78 chrX 71198208 71198374 -91401556 + L1MB5 LINE L1 465 617 -6872 641 73 0 0 chrX 71198378 71198460 -91401470 + AluSq SINE Alu 5 86 -226 7687 35 0 1 chrX 71198460 71199358 -91400572 + MER11D LTR ERVK 1 897 0 1511 145 0 4 chrX 71199358 71199592 -91400338 + AluSq SINE Alu 81 313 0 342 179 90 0 chrX 71199593 71199660 -91400270 + L1MB5 LINE L1 610 682 -6807 2072 182 14 154 chrX 71199690 71200417 -91399513 + L1MB5 LINE L1 607 1231 -6258 630 222 56 25 chrX 71200414 71200612 -91399318 + L1MB5 LINE L1 2517 2720 -4845 * 3578 155 50 0 chrX 71200636 71201294 -91398636 + L1MA4A LINE L1 5607 6297 -6 1438 153 29 0 chrX 71201352 71201627 -91398303 + L1MA8 LINE L1 6005 6287 -4 6978 228 34 26 chrX 71201655 71203453 -91396477 + L1MB5 LINE L1 4482 6264 -1329 7304 31 12 0 chrX 71203453 71204331 -91395599 + L1PA3 LINE L1 5264 6152 -3 6978 228 34 26 chrX 71204331 71204525 -91395405 + L1MB5 LINE L1 6264 6455 -1138 1490 219 51 66 chrX 71204525 71204996 -91394934 - MLT2C2 LTR ERVL 0 464 1 6978 228 34 26 chrX 71204996 71206085 -91393845 + L1MB5 LINE L1 6455 7585 -8 380 299 122 9 chrX 71206342 71206556 -91393374 - L2 LINE L2 -779 2535 2298 267 286 143 25 chrX 71206647 71206766 -91393164 - L2 LINE L2 -4 3268 3136 216 275 264 0 chrX 71206990 71207081 -91392849 + MER5B DNA MER1_type 63 177 -1 1833 286 49 27 chrX 71207285 71207842 -91392088 - L2 LINE L2 -1036 2278 1700 2084 142 0 0 chrX 71207842 71208138 -91391792 - AluSx SINE Alu -16 296 1 1833 286 49 27 chrX 71208138 71208310 -91391620 - L2 LINE L2 -1614 1700 1533 12841 176 55 16 chrX 71208334 71212270 -91387660 - L1MA2 LINE L1 -298 7425 3332 6729 164 64 10 chrX 71212268 71214616 -91385314 - L1MA1 LINE L1 0 6302 3841 * 256 392 18 0 chrX 71214733 71214899 -91385031 + HERVL LTR ERVL 5176 5344 -310 911 315 25 47 chrX 71215019 71215489 -91384441 + LTR16B LTR ERVL 3 462 -2 1459 207 51 79 chrX 71215491 71216060 -91383870 + L1ME LINE L1 5237 5787 -377 283 339 32 8 chrX 71216621 71216745 -91383185 + L2 LINE L2 2855 2981 -291 2212 193 17 17 chrX 71217651 71218066 -91381864 - MSTB1 LTR MaLR 0 432 18 581 288 57 0 chrX 71218102 71218279 -91381651 + MIR SINE MIR 15 201 -61 712 272 146 22 chrX 71218373 71218689 -91381241 - LTR18A LTR ERVL -2 355 1 40144 146 10 8 chrX 71218692 71224722 -91375208 - HERVL18 LTR ERVL -2 6045 2 742 247 158 29 chrX 71224729 71225045 -91374885 - LTR18A LTR ERVL 0 357 1 879 220 16 5 chrX 71225339 71225525 -91374405 - MER5A DNA MER1_type -1 188 1 310 325 54 18 chrX 71226125 71226291 -91373639 + MER5B DNA MER1_type 1 172 -6 380 306 93 38 chrX 71226954 71227137 -91372793 + MIR3 SINE MIR 1 193 -15 518 308 63 0 chrX 71227169 71227328 -91372602 + MIR SINE MIR 7 175 -87 395 378 42 46 chrX 71227555 71227817 -91372113 + L2 LINE L2 2715 2975 -339 32 26 0 0 chrX 71228074 71228113 -91371817 + AT_rich Low_complexity Low_complexity 1 39 0 1097 203 47 11 chrX 71228158 71228434 -91371496 + L1MA8 LINE L1 5981 6266 -25 493 157 17 8 chrX 71228427 71228562 -91371368 + L1MA4 LINE L1 5817 6002 -298 * 27 29 0 0 chrX 71228575 71228609 -91371321 + AT_rich Low_complexity Low_complexity 1 34 0 224 318 112 9 chrX 71228735 71228842 -91371088 + L3 LINE CR1 470 587 -990 834 151 7 0 chrX 71229021 71229167 -91370763 - L1MA5 LINE L1 -5 6295 6149 3807 154 85 44 chrX 71229168 71230045 -91369885 - L1MA4 LINE L1 -4 6159 5348 1993 133 0 22 chrX 71230045 71230360 -91369570 + AluY SINE Alu 1 308 -3 3807 154 85 44 chrX 71230360 71230396 -91369534 - L1MA4 LINE L1 -815 5348 5315 1738 191 0 3 chrX 71230402 71230695 -91369235 - AluSx SINE Alu -20 292 1 2505 67 0 10 chrX 71230724 71231073 -91368857 - AluY SINE Alu 0 346 1 5518 161 21 27 chrX 71231074 71232226 -91367704 - L1MA4 LINE L1 -827 5319 4175 183 287 96 26 chrX 71232380 71232495 -91367435 - L2 LINE L2 -12 3260 3138 4871 206 11 5 chrX 71232658 71234557 -91365373 - L1PA15 LINE L1 -3 6162 4173 3862 163 56 16 chrX 71234557 71235609 -91364321 - Tigger1 DNA MER2_type -665 1753 578 27 29 0 0 chrX 71235609 71235643 -91364287 + AT_rich Low_complexity Low_complexity 1 34 0 8148 39 0 3 chrX 71235643 71237426 -91362504 - L1PA3 LINE L1 -3 6152 4376 6803 35 0 0 chrX 71237427 71238243 -91361687 + L1PA3 LINE L1 3567 4382 -1764 2932 194 30 10 chrX 71238243 71238819 -91361111 - Tigger1 DNA MER2_type -1830 588 2 435 185 65 0 chrX 71238822 71238930 -91361000 + L1MC3 LINE L1 7663 7777 -8 2036 148 3 0 chrX 71238943 71239247 -91360683 + AluSx SINE Alu 1 305 -7 227 231 0 132 chrX 71239251 71239342 -91360588 - L2 LINE L2 -556 2758 2680 2614 199 11 35 chrX 71239363 71239935 -91359995 - MER89 LTR ERV1 0 559 2 21761 137 11 21 chrX 71240273 71243895 -91356035 + L1PA6 LINE L1 11 3594 -2552 2519 33 0 0 chrX 71243895 71244199 -91355731 - L1PA4 LINE L1 0 6155 5852 12352 89 1 1 chrX 71244208 71246730 -91353200 + L1PA6 LINE L1 3601 6152 -2 25 31 0 0 chrX 71246891 71246923 -91353007 + AT_rich Low_complexity Low_complexity 1 32 0 4438 179 38 25 chrX 71246963 71247326 -91352604 - L1PB4 LINE L1 -3 6856 6499 258 32 0 0 chrX 71247326 71247357 -91352573 + (TG)n Simple_repeat Simple_repeat 1 31 0 4438 179 38 25 chrX 71247357 71248645 -91351285 - L1PB4 LINE L1 -360 6499 5180 1633 118 4 0 chrX 71248651 71248959 -91350971 + L1P3 LINE L1 1482 1781 -4680 6557 214 16 29 chrX 71248959 71250697 -91349233 - L1PB4 LINE L1 -1693 5156 3441 366 269 80 102 chrX 71250691 71251055 -91348875 - L1PB4 LINE L1 -6321 529 174 * 380 129 0 14 chrX 71251055 71251125 -91348805 + (TTCC)n Simple_repeat Simple_repeat 1 69 0 299 25 25 0 chrX 71251141 71251181 -91348749 + (TCTCCC)n Simple_repeat Simple_repeat 2 42 0 1007 208 45 83 chrX 71251205 71251392 -91348538 - AluJo SINE Alu -4 308 134 212 0 36 0 chrX 71251392 71251420 -91348510 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1007 208 45 83 chrX 71251420 71251520 -91348410 - AluJo SINE Alu -178 134 32 474 241 0 115 chrX 71251569 71251661 -91348269 - L1PB4 LINE L1 -6680 169 68 2200 120 0 0 chrX 71251661 71251960 -91347970 + AluSq SINE Alu 1 299 -14 1457 78 0 0 chrX 71251962 71252153 -91347777 + L1PA8 LINE L1 5968 6158 -14 474 241 0 115 chrX 71252153 71252248 -91347682 - L1PB4 LINE L1 -6782 67 1 2806 122 14 2 chrX 71254370 71254804 -91345126 - LTR56 LTR ERV1 -6 439 1 897 253 125 24 chrX 71255005 71255294 -91344636 + MER102a DNA MER1_type 8 325 -5 4982 177 25 27 chrX 71255349 71256623 -91343307 - L1MA9 LINE L1 -4 6308 5042 6089 175 43 27 chrX 71256628 71259038 -91340892 - L1MA4A LINE L1 -4 7361 4921 263 70 0 23 chrX 71259038 71259081 -91340849 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 41804 54 5 3 chrX 71259081 71261971 -91337959 - L1PA4 LINE L1 -24 6131 3246 5932 48 1 0 chrX 71261971 71262701 -91337229 - L1PA3 LINE L1 -3 6152 5422 41804 54 5 3 chrX 71262701 71265926 -91334004 - L1PA4 LINE L1 -2909 3246 13 623 206 0 0 chrX 71265938 71266079 -91333851 - L1MA4A LINE L1 -2299 4909 4769 1428 197 42 3 chrX 71266080 71266465 -91333465 - L1MA4A LINE L1 -2667 4541 4142 2120 118 3 3 chrX 71266508 71266814 -91333116 - AluSq SINE Alu -7 306 1 4318 173 24 15 chrX 71266964 71267835 -91332095 - L1PA16 LINE L1 -7 6159 5281 2893 215 38 14 chrX 71267868 71268707 -91331223 - L1MA4A LINE L1 -3223 3985 3167 2021 149 3 0 chrX 71268707 71269016 -91330914 - AluSp SINE Alu 0 313 4 2893 215 38 14 chrX 71269016 71269639 -91330291 - L1MA4A LINE L1 -4041 3167 1970 488 310 99 16 chrX 71269781 71270023 -91329907 + MIR SINE MIR 1 262 0 205 229 42 0 chrX 71270225 71270273 -91329657 + L2 LINE L2 3204 3253 -19 490 191 0 0 chrX 71270303 71270392 -91329538 + MLT1B LTR MaLR 1 89 -301 6334 36 0 0 chrX 71270392 71271165 -91328765 + L1P LINE L1 1344 2116 -4030 3267 265 31 1 chrX 71271164 71272064 -91327866 - L1MA4A LINE L1 -5223 1986 1012 * 7956 210 28 14 chrX 71272077 71274399 -91325531 - L1M1 LINE L1 -2068 5497 3143 13427 192 27 9 chrX 71274407 71280223 -91319707 - L1PB1 LINE L1 -1 6866 634 979 194 10 0 chrX 71280223 71280419 -91319511 - L1PB1 LINE L1 -6663 200 3 14879 191 46 24 chrX 71280424 71280512 -91319418 - L1M1 LINE L1 -4395 3170 3085 2085 105 20 10 chrX 71280512 71280807 -91319123 - AluSg SINE Alu -2 308 11 14879 191 46 24 chrX 71280807 71283758 -91316172 - L1M1 LINE L1 -4480 3085 66 819 287 40 34 chrX 71283789 71284117 -91315813 - L1PA13 LINE L1 -5169 1618 1289 2236 302 68 27 chrX 71284272 71285013 -91314917 - L1PA13 LINE L1 -6016 771 1 1120 232 27 13 chrX 71285022 71285325 -91314605 - L1MB2 LINE L1 -31 6140 5832 356 283 107 6 chrX 71285319 71285478 -91314452 - MIR SINE MIR -3 259 85 * 268 174 72 0 chrX 71286757 71286826 -91313104 + L1PA8 LINE L1 6099 6172 0 260 53 26 0 chrX 71286929 71286967 -91312963 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 1750 161 48 0 chrX 71286995 71287286 -91312644 + AluJb SINE Alu 1 305 -7 1641 255 6 3 chrX 71287879 71288224 -91311706 + L1PA14 LINE L1 966 1311 -6270 12021 193 7 45 chrX 71288242 71291115 -91308815 - L1PB1 LINE L1 -2 6865 4210 1767 106 117 18 chrX 71291115 71291389 -91308541 - AluSg SINE Alu -2 308 8 12021 193 7 45 chrX 71291389 71292753 -91307177 - L1PB1 LINE L1 -2657 4210 2796 597 146 0 0 chrX 71292765 71292868 -91307062 - L1PB1 LINE L1 -4129 2734 2632 * 11444 208 16 4 chrX 71292867 71295472 -91304458 + L1PA14 LINE L1 4233 6866 -740 41031 48 22 2 chrX 71295473 71301501 -91298429 + L1PA2 LINE L1 1 6154 -1 4462 133 7 7 chrX 71301523 71302258 -91297672 + L1PA14 LINE L1 6851 7585 -14 2151 80 25 3 chrX 71302258 71302419 -91297511 - AluY SINE Alu -19 292 121 201 108 0 0 chrX 71302419 71302456 -91297474 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2151 80 25 3 chrX 71302456 71302580 -91297350 - AluY SINE Alu -190 121 1 180 405 16 32 chrX 71303263 71303389 -91296541 + MIR SINE MIR 17 140 -68 361 319 6 19 chrX 71303855 71304015 -91295915 + A-rich Low_complexity Low_complexity 2 159 0 904 189 60 36 chrX 71304872 71305027 -91294903 + L1MA4 LINE L1 6042 6207 -93 2090 142 80 0 chrX 71305027 71305364 -91294566 - THE1B LTR MaLR 0 364 1 904 189 60 36 chrX 71305364 71305456 -91294474 + L1MA4 LINE L1 6207 6295 -5 2053 126 0 7 chrX 71305536 71305830 -91294100 - AluSg SINE Alu -18 292 1 525 403 80 9 chrX 71306172 71306723 -91293207 - L3 LINE CR1 -2 1575 986 4654 38 0 0 chrX 71306771 71307330 -91292600 + L1PA4 LINE L1 5596 6154 -1 377 278 0 0 chrX 71307514 71307604 -91292326 - MIR SINE MIR -86 122 33 521 327 39 29 chrX 71308628 71308909 -91291021 + HAL1 LINE L1 2 285 -2222 933 242 132 25 chrX 71308953 71309271 -91290659 - MLT1I LTR MaLR -4 405 54 634 303 114 42 chrX 71309325 71309685 -91290245 + HAL1 LINE L1 324 709 -1798 1190 249 42 34 chrX 71309844 71310322 -91289608 + HAL1 LINE L1 1014 1495 -1012 887 262 42 57 chrX 71310549 71310705 -91289225 + HAL1 LINE L1 1498 1655 -852 2754 177 7 0 chrX 71310705 71311169 -91288761 + MLT1C LTR MaLR 1 467 0 887 262 42 57 chrX 71311169 71311344 -91288586 + HAL1 LINE L1 1655 1824 -683 318 253 95 0 chrX 71311601 71311696 -91288234 + MLT1J2 LTR MaLR 347 450 0 235 310 123 28 chrX 71312285 71312430 -91287500 - MIR SINE MIR -40 168 1 1880 180 5 40 chrX 71312822 71313200 -91286730 + MER47A DNA MER2_type 2 366 0 352 188 38 12 chrX 71313755 71313835 -91286095 - Tigger1 DNA MER2_type -4 2414 2333 2006 174 15 15 chrX 71313837 71314244 -91285686 - L1MA5 LINE L1 0 6300 5894 2920 100 5 2 chrX 71314244 71314661 -91285269 - L1PA13 LINE L1 0 6163 5742 1506 192 83 0 chrX 71314667 71314980 -91284950 - L1MA5 LINE L1 -421 5879 5541 1975 198 40 12 chrX 71314980 71315179 -91284751 + MSTB LTR MaLR 1 193 -233 2172 102 0 3 chrX 71315179 71315472 -91284458 + AluSc SINE Alu 1 292 -17 1975 198 40 12 chrX 71315472 71315671 -91284259 + MSTB LTR MaLR 193 410 -16 6385 183 34 21 chrX 71315687 71317284 -91282646 - L1MA5 LINE L1 -743 5403 3942 18503 188 22 11 chrX 71317310 71321088 -91278842 - L1MA1 LINE L1 0 7721 3984 2171 176 15 0 chrX 71321088 71321485 -91278445 - MER57A LTR ERV1 0 403 1 18503 188 22 11 chrX 71321485 71322978 -91276952 - L1MA1 LINE L1 -3737 3984 2508 1542 79 9 5 chrX 71322978 71323192 -91276738 - L1PA7 LINE L1 -10 6144 5930 18503 188 22 11 chrX 71323192 71325544 -91274386 - L1MA1 LINE L1 -5213 2508 13 2471 206 27 14 chrX 71325547 71326106 -91273824 - L1MA5 LINE L1 -2208 3938 3373 6413 162 28 27 chrX 71326106 71327059 -91272871 - Tigger1 DNA MER2_type -1228 1190 234 1819 179 0 0 chrX 71327059 71327356 -91272574 + AluSx SINE Alu 3 299 -13 6413 162 28 27 chrX 71327356 71327591 -91272339 - Tigger1 DNA MER2_type -2184 234 1 35 24 0 0 chrX 71328027 71328069 -91271861 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chrX 71328162 71328207 -91271723 + AT_rich Low_complexity Low_complexity 1 45 0 232 248 199 22 chrX 71328210 71328436 -91271494 + L1ME4a LINE L1 5825 6090 -31 1760 168 35 27 chrX 71329791 71330161 -91269769 - THE1C LTR MaLR 0 375 3 353 342 5 37 chrX 71330289 71330479 -91269451 + L1ME LINE L1 4984 5167 -979 24 32 0 0 chrX 71330503 71330534 -91269396 + AT_rich Low_complexity Low_complexity 1 31 0 791 329 36 10 chrX 71330637 71330941 -91268989 - MLT1I LTR MaLR 0 409 98 464 318 34 23 chrX 71331106 71331343 -91268587 + L1ME LINE L1 5414 5653 -468 292 282 96 64 chrX 71331346 71331765 -91268165 - HAL1 LINE L1 -970 1537 1106 2271 118 7 0 chrX 71331765 71332071 -91267859 - AluSg SINE Alu -2 308 1 269 230 27 0 chrX 71332268 71332342 -91267588 + MER116 DNA Mariner 1 76 -4 22 0 0 0 chrX 71332399 71332421 -91267509 + AT_rich Low_complexity Low_complexity 1 22 0 340 329 131 40 chrX 71332421 71332649 -91267281 + HAL1 LINE L1 2224 2479 -28 207 0 0 0 chrX 71332649 71332672 -91267258 + (TG)n Simple_repeat Simple_repeat 2 24 0 340 329 131 40 chrX 71332672 71332695 -91267235 + HAL1 LINE L1 2479 2498 -9 207 0 0 0 chrX 71332695 71332718 -91267212 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 306 237 43 101 chrX 71332725 71332864 -91267066 + L1M4 LINE L1 2173 2303 -3843 1623 290 45 119 chrX 71332941 71333365 -91266565 + L1PB4 LINE L1 3 457 -6392 2883 13 0 0 chrX 71333365 71333680 -91266250 - AluYb8 SINE Alu -3 315 1 1623 290 45 119 chrX 71333680 71335430 -91264500 + L1PB4 LINE L1 457 2014 -4835 7341 221 24 5 chrX 71335439 71337819 -91262111 + L1PB4 LINE L1 4081 6498 -361 268 235 0 60 chrX 71337819 71338002 -91261928 + (TA)n Simple_repeat Simple_repeat 2 173 0 1923 174 11 8 chrX 71338011 71338372 -91261558 + L1PB4 LINE L1 6485 6846 -13 4821 85 2 0 chrX 71338529 71339174 -91260756 - L1PA7 LINE L1 0 6154 5509 216 0 0 0 chrX 71339349 71339373 -91260557 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2933 166 28 5 chrX 71340285 71340850 -91259080 - L1PA15 LINE L1 -7 6158 5581 3066 240 35 37 chrX 71340857 71342012 -91257918 - L1PA13 LINE L1 -2587 4210 3059 6273 93 8 0 chrX 71342036 71343530 -91256400 - L1PA7 LINE L1 -11 6458 4958 12845 51 1 0 chrX 71343548 71345930 -91254000 - L1PA4 LINE L1 -2 6153 3764 8240 95 13 0 chrX 71345930 71347132 -91252798 - L1PA4 LINE L1 -4926 1220 3 10616 113 15 61 chrX 71347135 71349158 -91250772 - L1PA7 LINE L1 -1489 4972 3042 * 10629 126 3 2 chrX 71349154 71350810 -91249120 - L1PA7 LINE L1 -4797 1664 8 1007 236 71 15 chrX 71350814 71351140 -91248790 - L1PA13 LINE L1 -3725 3072 2729 * 3100 275 46 16 chrX 71351126 71352156 -91247774 - L1PA13 LINE L1 -4786 2001 941 1738 219 62 2 chrX 71352274 71352676 -91247254 + MSTB LTR MaLR 1 426 0 6578 233 11 37 chrX 71352676 71353248 -91246682 + MSTB-int LTR MaLR 1 586 -785 339 25 0 0 chrX 71353248 71353288 -91246642 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5440 50 0 0 chrX 71353288 71353945 -91245985 - L1PA3 LINE L1 -18 6137 5481 6578 233 11 37 chrX 71353945 71355064 -91244866 + MSTB-int LTR MaLR 584 1365 -6 340 132 2 2 chrX 71355066 71355127 -91244803 + MSTB LTR MaLR 2 62 -366 40332 54 2 2 chrX 71355127 71361277 -91238653 + L1PA3 LINE L1 21 6167 0 8184 165 49 14 chrX 71361279 71362930 -91237000 - L1M1 LINE L1 -4380 3185 1477 870 220 37 5 chrX 71362934 71363152 -91236778 + ERVL LTR ERVL 3966 4190 -1574 1016 251 283 6 chrX 71363152 71363622 -91236308 + MLT2F LTR ERVL 3 602 -61 227 200 0 27 chrX 71363623 71363683 -91236247 + (TCTA)n Simple_repeat Simple_repeat 2 61 -13 1863 155 109 20 chrX 71363683 71364076 -91235854 - MSTA LTR MaLR 0 428 1 227 200 0 27 chrX 71364076 71364090 -91235840 + (TCTA)n Simple_repeat Simple_repeat 61 74 0 1868 242 40 25 chrX 71364232 71364782 -91235148 + MER74A LTR ERVL 1 558 0 634 111 0 0 chrX 71366412 71366502 -91233428 + 5S rRNA rRNA 1 90 -31 22 35 0 0 chrX 71366520 71366549 -91233381 + AT_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chrX 71367589 71367613 -91232317 + (CA)n Simple_repeat Simple_repeat 2 25 0 394 197 0 0 chrX 71367692 71367768 -91232162 + MLT1A1 LTR MaLR 2 77 -288 471 250 14 7 chrX 71367947 71368095 -91231835 - L1M4 LINE L1 -2154 3992 3844 266 280 91 44 chrX 71368106 71368624 -91231306 - L1M4 LINE L1 -2588 3558 3017 10157 44 8 0 chrX 71368626 71370306 -91229624 + L1PA4 LINE L1 4076 5766 -389 1097 57 0 0 chrX 71370306 71370445 -91229485 + L1PA4 LINE L1 6008 6148 -7 339 250 0 0 chrX 71370478 71370570 -91229360 - L1M4 LINE L1 -3119 3027 2936 * 1990 123 2 99 chrX 71370569 71370925 -91229005 + L1P LINE L1 3030 3334 -2812 2282 48 10 3 chrX 71370925 71371199 -91228731 + L1PA5 LINE L1 5851 6143 -11 1990 123 2 99 chrX 71371199 71371296 -91228634 + L1P LINE L1 3334 3439 -2707 1919 25 8 0 chrX 71371294 71371532 -91228398 - L1PA4 LINE L1 -418 5737 5498 * 3228 53 2 2 chrX 71371532 71371946 -91227984 + L1PA4 LINE L1 5741 6155 0 1184 135 0 5 chrX 71371961 71372154 -91227776 + L1P LINE L1 3426 3617 -2529 1269 255 6 8 chrX 71372184 71372655 -91227275 - L1M4 LINE L1 -3221 2925 2456 1639 219 34 4 chrX 71372656 71373154 -91226776 - L1M4 LINE L1 -3038 3344 2832 1501 239 64 13 chrX 71373155 71373532 -91226398 + MSTD LTR MaLR 1 396 0 4356 244 80 92 chrX 71373533 71375274 -91224656 + MSTD-int LTR MaLR 2 1720 -15 1342 206 92 24 chrX 71375288 71375657 -91224273 + MSTD LTR MaLR 1 394 -2 434 235 109 36 chrX 71375660 71375907 -91224023 - L1M4 LINE L1 -3549 2833 2569 2238 220 66 21 chrX 71375907 71376576 -91223354 - MER67C LTR ERV1 -11 699 1 1593 140 19 15 chrX 71376619 71376890 -91223040 - THE1C LTR MaLR 0 375 104 8104 149 43 43 chrX 71376890 71378417 -91221513 - THE1C-int LTR MaLR -53 1527 1 2493 132 11 3 chrX 71378417 71378789 -91221141 - THE1C LTR MaLR 0 375 1 268 235 127 19 chrX 71378836 71379049 -91220881 - L1M4 LINE L1 -3914 2470 2235 7390 144 39 8 chrX 71379078 71380922 -91219008 + L1PB1 LINE L1 685 2758 -4105 6089 227 17 8 chrX 71380929 71382692 -91217238 + L1PB1 LINE L1 2826 4603 -2259 1860 35 0 0 chrX 71382695 71382926 -91217004 - L1P2 LINE L1 -338 5817 5587 * 27642 54 6 2 chrX 71382916 71388265 -91211665 + L1PA4 LINE L1 776 6155 0 5972 184 11 3 chrX 71388319 71390510 -91209420 + L1PB1 LINE L1 4664 6867 0 21 0 0 0 chrX 71390513 71390534 -91209396 + AT_rich Low_complexity Low_complexity 1 21 0 1370 246 65 42 chrX 71390651 71390751 -91209179 - L1M4c LINE L1 -4488 1896 1800 3975 154 29 12 chrX 71390751 71391124 -91208806 + L1PB2 LINE L1 5405 5770 -381 423 0 0 0 chrX 71391124 71391171 -91208759 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 3975 154 29 12 chrX 71391171 71391532 -91208398 + L1PB2 LINE L1 5770 6151 0 1370 246 65 42 chrX 71391532 71392001 -91207929 - L1M4c LINE L1 -4584 1800 1314 3751 186 29 9 chrX 71392019 71392390 -91207540 - L1PB4 LINE L1 -2 6154 5792 207 114 0 0 chrX 71392390 71392425 -91207505 + (TG)n Simple_repeat Simple_repeat 2 36 0 3751 186 29 9 chrX 71392425 71392805 -91207125 - L1PB4 LINE L1 -364 5792 5388 5468 170 21 4 chrX 71392809 71394622 -91205308 - L1PB2 LINE L1 -2 6865 5026 7045 232 26 9 chrX 71394624 71396514 -91203416 - L1PB2 LINE L1 -5223 1640 3 2625 249 15 7 chrX 71396593 71397309 -91202621 - L1PB4 LINE L1 -880 5266 4545 317 143 0 16 chrX 71397321 71397384 -91202546 - LTR43 LTR ERV1 -346 256 195 246 178 0 0 chrX 71397596 71397641 -91202289 + L1PA16 LINE L1 6106 6150 -16 1733 204 99 8 chrX 71397706 71398300 -91201630 - L1MA8 LINE L1 -18 6273 5627 * 18704 192 30 8 chrX 71398295 71404935 -91194995 - L1PA12 LINE L1 -781 6803 5 12531 131 4 10 chrX 71404957 71407796 -91192134 - L1PA8 LINE L1 0 6172 3342 1541 218 44 11 chrX 71407796 71408365 -91191565 - L1MA8 LINE L1 -1027 5119 4430 12110 240 234 10 chrX 71408439 71412510 -91187420 - L1MA1 LINE L1 0 7721 4566 1881 117 63 27 chrX 71412510 71412809 -91187121 - AluSx SINE Alu -1 311 2 12110 240 234 10 chrX 71412809 71415773 -91184157 - L1MA1 LINE L1 -3155 4566 36 422 51 0 0 chrX 71415854 71415955 -91183975 + L1PA3 LINE L1 6089 6189 0 1407 326 105 44 chrX 71415973 71417052 -91182878 - L2 LINE L2 -1612 1702 558 1243 198 62 4 chrX 71418341 71418599 -91181331 + L1M1 LINE L1 1 273 -7292 * 40234 52 0 2 chrX 71418598 71424472 -91175458 + L1PA3 LINE L1 309 6174 0 7447 137 9 0 chrX 71424472 71425546 -91174384 + THE1A-int LTR MaLR 484 1567 -13 2078 153 11 6 chrX 71425551 71425904 -91174026 + THE1A LTR MaLR 1 355 0 1481 183 11 0 chrX 71425904 71426189 -91173741 + L1M1 LINE L1 2000 2287 -5278 6072 189 20 49 chrX 71426202 71428432 -91171498 + L1M1 LINE L1 2451 4578 -2987 4442 86 0 2 chrX 71428432 71429034 -91170896 + L1PA7 LINE L1 5550 6150 -4 6072 189 20 49 chrX 71429034 71429647 -91170283 + L1M1 LINE L1 4578 5207 -2358 21791 131 39 68 chrX 71429657 71434628 -91165302 + L1PA7 LINE L1 12 4831 -1315 6584 89 0 0 chrX 71434630 71435993 -91163937 + L1PA7 LINE L1 4781 6150 -4 4158 213 28 41 chrX 71436004 71437214 -91162716 + L1 LINE L1 3515 4709 -1437 2034 122 3 23 chrX 71437214 71437517 -91162413 + AluSc SINE Alu 1 297 -12 4158 213 28 41 chrX 71437517 71437561 -91162369 + L1 LINE L1 4709 4752 -1394 40524 53 1 1 chrX 71437566 71443785 -91156145 + L1PA2 LINE L1 3 9496 -20 19902 43 0 0 chrX 71443785 71447060 -91152870 + L1PA3 LINE L1 2840 6153 -2 40524 53 1 1 chrX 71447060 71447081 -91152849 + L1PA2 LINE L1 9496 9516 0 1366 184 4 0 chrX 71447081 71447347 -91152583 + L1PA13 LINE L1 4068 4334 -1812 * 32244 118 10 12 chrX 71447341 71453502 -91146428 - L1PA6 LINE L1 0 6154 11 2789 195 10 38 chrX 71453522 71454209 -91145721 + L1PA13 LINE L1 4326 4993 -1153 848 143 0 0 chrX 71454209 71454328 -91145602 + AluSc SINE Alu 133 251 -58 194 0 0 37 chrX 71454333 71454360 -91145570 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4261 159 73 4 chrX 71454361 71454537 -91145393 + L1PA13 LINE L1 4990 5152 -1011 203 0 37 0 chrX 71454537 71454564 -91145366 + (TA)n Simple_repeat Simple_repeat 2 29 0 4261 159 73 4 chrX 71454564 71455449 -91144481 + L1PA13 LINE L1 5152 6121 -42 1066 230 42 3 chrX 71455480 71455811 -91144119 + L1 LINE L1 3439 3782 -2364 38474 77 1 2 chrX 71455832 71461983 -91137947 - L1PA5 LINE L1 -7 6147 1 267 133 0 0 chrX 71461988 71462033 -91137897 + L1 LINE L1 3800 3844 -2302 8291 254 28 6 chrX 71462043 71462123 -91137807 + L1M1 LINE L1 13 90 -7475 225 0 0 0 chrX 71462123 71462148 -91137782 + (CA)n Simple_repeat Simple_repeat 2 26 0 8291 254 28 6 chrX 71462148 71464099 -91135831 + L1M1 LINE L1 90 2088 -5477 1221 268 33 82 chrX 71464100 71464711 -91135219 + LTR9 LTR ERV1 1 581 -31 28242 150 29 39 chrX 71464781 71466788 -91133142 + HUERS-P3 LTR ERV1 1 2026 -6893 2187 130 3 10 chrX 71466788 71467096 -91132834 + AluSx SINE Alu 1 306 -6 28242 150 29 39 chrX 71467096 71469751 -91130179 + HUERS-P3 LTR ERV1 2026 4608 -4311 1856 131 0 78 chrX 71469751 71470057 -91129873 + AluSg1 SINE Alu 1 282 -27 28242 150 29 39 chrX 71470057 71470677 -91129253 + HUERS-P3 LTR ERV1 4608 5233 -3686 8078 125 33 14 chrX 71470679 71471994 -91127936 + L1PA7 LINE L1 1 1339 -5122 7087 29 4 0 chrX 71471990 71472898 -91127032 - L1P LINE L1 -3063 3083 2172 * 6839 23 0 0 chrX 71472898 71473686 -91126244 + L1PA2 LINE L1 5362 6152 -3 25582 120 9 7 chrX 71473781 71477944 -91121986 + L1PA7 LINE L1 1314 5487 -982 306 0 0 0 chrX 71477944 71477978 -91121952 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 25582 120 9 7 chrX 71477978 71478960 -91120970 + L1PA7 LINE L1 5487 6466 -3 6905 111 11 2 chrX 71478960 71480002 -91119928 + HUERS-P3 LTR ERV1 5225 6275 -2644 17456 115 6 4 chrX 71480054 71482603 -91117327 + HUERS-P3 LTR ERV1 6366 8919 0 1308 244 49 85 chrX 71482603 71483238 -91116692 + LTR9 LTR ERV1 1 612 0 1206 149 41 0 chrX 71483238 71483488 -91116442 + L1M1 LINE L1 2086 2346 -5219 17796 53 1 2 chrX 71483461 71486348 -91113582 + L1PA4 LINE L1 4686 7574 0 5556 181 14 19 chrX 71486348 71487670 -91112260 + L1M1 LINE L1 2518 3831 -3734 11145 170 21 52 chrX 71487673 71491139 -91108791 + L1P3 LINE L1 1 3573 -2888 2192 116 0 7 chrX 71491139 71491433 -91108497 + AluSg SINE Alu 1 292 -18 11145 170 21 52 chrX 71491433 71491476 -91108454 + L1P3 LINE L1 3573 3393 -3068 2068 139 0 7 chrX 71491476 71491785 -91108145 + AluSq SINE Alu 1 307 -6 11145 170 21 52 chrX 71491785 71491816 -91108114 + L1P3 LINE L1 3392 3422 -3039 2415 96 0 0 chrX 71491807 71492130 -91107800 - L1P LINE L1 -2015 4131 3809 * 6138 101 4 27 chrX 71492124 71493446 -91106484 + L1PA8A LINE L1 4814 6102 -29 294 100 0 0 chrX 71493470 71493520 -91106410 + L1PA8A LINE L1 5352 5401 -753 35187 110 10 17 chrX 71493531 71499706 -91100224 + L1PA6 LINE L1 11 6152 -2 2347 64 3 0 chrX 71499707 71500003 -91099927 + L1PA8A LINE L1 5387 5683 -448 241 91 0 0 chrX 71500018 71500051 -91099879 + L1MA1 LINE L1 6088 6120 -182 7732 221 21 6 chrX 71500062 71501644 -91098286 + L1PA13 LINE L1 1 1605 -5182 1819 126 22 0 chrX 71501661 71501931 -91097999 - L1PB2 LINE L1 0 6151 5876 923 134 177 6 chrX 71501934 71502098 -91097832 - L1PA13 LINE L1 -6199 588 397 493 170 0 21 chrX 71502071 71502165 -91097765 - L1PB2 LINE L1 -256 6546 6455 * 294 51 0 0 chrX 71502161 71502200 -91097730 - L1PA13 LINE L1 -6348 439 401 * 3401 177 17 18 chrX 71502190 71503107 -91096823 - L1PB2 LINE L1 -268 5883 4970 3547 98 4 0 chrX 71503115 71503566 -91096364 - MLT2A2 LTR ERVL 0 453 1 41564 104 6 7 chrX 71503566 71509212 -91090718 - HERVL-A2 LTR ERVL 0 5654 14 5800 207 12 8 chrX 71509212 71509225 -91090705 - L1PB2 LINE L1 -1172 4974 4963 3261 132 11 0 chrX 71509225 71509673 -91090257 - MLT2A2 LTR ERVL 0 453 1 5800 207 12 8 chrX 71509673 71510951 -91088979 - L1PB2 LINE L1 -1183 4963 3678 3121 177 35 26 chrX 71510948 71511312 -91088618 + L1PA13 LINE L1 1618 1992 -4795 * 1795 121 7 46 chrX 71511312 71511593 -91088337 - L1PA11 LINE L1 0 6174 5905 3121 177 35 26 chrX 71511593 71511883 -91088047 + L1PA13 LINE L1 1992 2278 -4509 3576 254 26 6 chrX 71511903 71512856 -91087074 + L1PA13 LINE L1 2636 3607 -3190 8507 230 95 5 chrX 71512867 71514746 -91085184 + L1M1 LINE L1 62 2109 -5456 989 209 10 0 chrX 71514751 71514947 -91084983 + L1PB1 LINE L1 3 200 -6663 1275 170 12 32 chrX 71514947 71515200 -91084730 + L1PB1 LINE L1 634 881 -5982 3200 249 63 6 chrX 71515215 71515655 -91084275 + L1PB1 LINE L1 6 419 -6444 219 36 0 0 chrX 71515655 71515683 -91084247 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 3200 249 63 6 chrX 71515683 71516223 -91083707 + L1PB1 LINE L1 419 1042 -5821 13382 209 19 30 chrX 71516229 71519202 -91080728 + L1PB1 LINE L1 1092 4095 -2772 2574 95 0 0 chrX 71519202 71519528 -91080402 - L1PA7 LINE L1 -3 6151 5826 13382 209 19 30 chrX 71519528 71521014 -91078916 + L1PB1 LINE L1 4095 5690 -1177 2106 124 0 7 chrX 71521014 71521312 -91078618 + AluSq SINE Alu 1 296 -17 13382 209 19 30 chrX 71521312 71522477 -91077453 + L1PB1 LINE L1 5690 6866 -1 1363 157 4 44 chrX 71522474 71522748 -91077182 + L1PB1 LINE L1 863 1125 -5738 * 28235 137 19 58 chrX 71522746 71529180 -91070750 - L1PA8 LINE L1 0 6172 1 8505 190 53 13 chrX 71529182 71531338 -91068592 + L1PB1 LINE L1 1113 3595 -3267 2415 76 0 10 chrX 71531338 71531641 -91068289 + AluY SINE Alu 1 300 -11 8505 190 53 13 chrX 71531641 71532840 -91067090 + L1PB1 LINE L1 3595 4744 -2118 20126 96 1 2 chrX 71532840 71535634 -91064296 + L1PA5 LINE L1 1 2793 -3353 12153 59 1 4 chrX 71535634 71537995 -91061935 + L1PA5 LINE L1 3793 6154 0 4881 206 13 13 chrX 71538019 71538990 -91060940 + L1PB1 LINE L1 4728 5700 -1167 7489 30 0 0 chrX 71538990 71540517 -91059413 + L1PA3 LINE L1 4615 6141 -14 4881 206 13 13 chrX 71540517 71541271 -91058659 + L1PB1 LINE L1 5700 6452 -415 330 196 0 72 chrX 71541273 71541370 -91058560 + L1MC4 LINE L1 6614 6703 -1339 2215 131 11 3 chrX 71541390 71541756 -91058174 + L1PB1 LINE L1 6499 6867 0 4434 173 23 29 chrX 71541778 71542760 -91057170 + L1MA2 LINE L1 2088 3064 -4501 1374 225 12 0 chrX 71542757 71543077 -91056853 + L1M1 LINE L1 3701 4024 -3541 * 2625 213 36 10 chrX 71543083 71544166 -91055764 + L1MA2 LINE L1 3061 4169 -3396 * 28326 133 20 58 chrX 71544165 71546635 -91053295 - L1PA7 LINE L1 -1 6153 3592 294 73 0 0 chrX 71546635 71546676 -91053254 + (TG)n Simple_repeat Simple_repeat 2 42 0 28326 133 20 58 chrX 71546676 71550600 -91049330 - L1PA7 LINE L1 -2562 3592 12 7888 218 29 20 chrX 71550634 71552665 -91047265 + L1MA2 LINE L1 4184 6231 -1334 1624 233 23 17 chrX 71552665 71553142 -91046788 - L1MA2 LINE L1 -768 6797 6318 * 2376 142 26 0 chrX 71553138 71553525 -91046405 + L1MA2 LINE L1 6804 7200 -523 1179 172 0 0 chrX 71553531 71553729 -91046201 + L1PB1 LINE L1 3 200 -6663 13382 204 66 18 chrX 71553729 71559332 -91040598 + L1PB1 LINE L1 634 6540 -327 396 0 0 0 chrX 71559332 71559376 -91040554 + (CA)n Simple_repeat Simple_repeat 1 44 0 13382 204 66 18 chrX 71559376 71559689 -91040241 + L1PB1 LINE L1 6540 6837 -30 2758 171 14 2 chrX 71559736 71560255 -91039675 + L1MA2 LINE L1 7199 7723 0 520 219 33 20 chrX 71560269 71560420 -91039510 + L1 LINE L1 3921 4073 -2073 801 161 0 0 chrX 71560421 71560558 -91039372 + L1 LINE L1 4182 4318 -1828 10773 247 46 19 chrX 71560589 71561272 -91038658 - L1PA16 LINE L1 -9 6808 6145 1817 164 0 7 chrX 71561272 71561559 -91038371 + AluSx SINE Alu 1 285 -27 10773 247 46 19 chrX 71561559 71565397 -91034533 - L1PA16 LINE L1 -672 6145 2168 1743 170 39 10 chrX 71565413 71565719 -91034211 - MER51B LTR ERV1 0 377 63 318 159 36 145 chrX 71565711 71565849 -91034081 - MER51B LTR ERV1 -215 162 40 * 460 179 37 30 chrX 71565849 71565990 -91033940 - MER51A LTR ERV1 -236 141 1 1708 288 30 11 chrX 71565990 71566612 -91033318 - L1PA16 LINE L1 -4643 2144 1511 413 318 20 20 chrX 71567477 71567625 -91032305 - L1PA16 LINE L1 -5268 1519 1372 1103 393 5 19 chrX 71567667 71568262 -91031668 - L1PA16 LINE L1 -6200 587 1 9167 232 28 19 chrX 71568271 71570763 -91029167 + L1 LINE L1 2611 5127 -1019 2383 147 10 2 chrX 71570763 71571170 -91028760 + L1MA3 LINE L1 5896 6305 0 9167 232 28 19 chrX 71571170 71571190 -91028740 + L1 LINE L1 5127 5145 -1001 5251 187 38 30 chrX 71571182 71572880 -91027050 + L1MA7 LINE L1 4077 5791 -500 * 303 146 0 0 chrX 71572882 71572937 -91026993 + (TA)n Simple_repeat Simple_repeat 1 55 0 2626 180 2 17 chrX 71572937 71573453 -91026477 + L1MA7 LINE L1 5781 6288 -3 1444 177 119 25 chrX 71573654 71573981 -91025949 - MSTC LTR MaLR 0 428 71 1680 174 21 43 chrX 71573981 71574325 -91025605 + L1 LINE L1 4993 5328 -818 637 273 106 44 chrX 71574325 71574666 -91025264 - MLT1A1 LTR MaLR 0 365 4 1680 174 21 43 chrX 71574666 71574741 -91025189 + L1 LINE L1 5328 5403 -743 14472 185 25 13 chrX 71574742 71578130 -91021800 + L1MA2 LINE L1 2131 5561 -741 249 62 0 0 chrX 71578133 71578165 -91021765 + tRNA-Tyr-TAC tRNA tRNA 1 32 -44 4860 114 8 11 chrX 71578184 71578930 -91021000 + L1MA2 LINE L1 5548 6291 -13 10278 176 18 21 chrX 71578930 71582492 -91017438 + L1MA4A LINE L1 1633 5191 -1814 2288 184 16 14 chrX 71582492 71582921 -91017009 - MSTB1 LTR MaLR 0 432 3 10278 176 18 21 chrX 71582921 71584730 -91015200 + L1MA4A LINE L1 5191 7003 -2 261 0 0 0 chrX 71584781 71584810 -91015120 + (TG)n Simple_repeat Simple_repeat 2 30 0 492 304 112 11 chrX 71584893 71585169 -91014761 + L1M4 LINE L1 2917 3220 -2926 2124 304 134 38 chrX 71585171 71586422 -91013508 - L2 LINE L2 -170 3143 1762 198 0 0 0 chrX 71586819 71586841 -91013089 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 212 197 0 16 chrX 71587944 71588005 -91011925 + GA-rich Low_complexity Low_complexity 1 60 0 1106 298 24 31 chrX 71588060 71588513 -91011417 + LTR16A LTR ERVL 1 450 0 975 249 51 0 chrX 71588517 71588754 -91011176 - MIR SINE MIR -12 250 2 453 305 26 19 chrX 71588909 71589063 -91010867 + L2 LINE L2 2643 2797 -517 687 304 63 22 chrX 71589131 71589447 -91010483 + MLT1I LTR MaLR 63 391 -18 2434 93 0 0 chrX 71589605 71589905 -91010025 + AluSg SINE Alu 1 300 -10 490 274 138 98 chrX 71592680 71593654 -91006276 - L1M2 LINE L1 -5470 1379 391 205 176 0 0 chrX 71594914 71594948 -91004982 + GA-rich Low_complexity Low_complexity 1 34 0 3237 70 7 0 chrX 71595096 71595524 -91004406 - L1PA7 LINE L1 0 6154 5724 254 347 34 0 chrX 71595753 71595992 -91003938 + L1ME LINE L1 5590 5836 -285 262 272 30 5 chrX 71596227 71596357 -91003573 + L1MCa LINE L1 1706 1928 -4590 1107 200 32 104 chrX 71596494 71596594 -91003336 - LTR55 LTR ERV -4 544 438 3792 131 11 35 chrX 71596594 71597244 -91002686 - L1PA16 LINE L1 -9 6157 5524 1107 200 32 104 chrX 71597244 71597673 -91002257 - LTR55 LTR ERV -110 438 1 2633 198 25 13 chrX 71598520 71599072 -91000858 + MER89 LTR ERV1 1 559 0 226 160 40 0 chrX 71599806 71599856 -91000074 - MER89 LTR ERV1 0 559 508 1636 60 5 0 chrX 71601149 71601366 -90998564 - L1PA4 LINE L1 0 6155 5938 39505 58 16 0 chrX 71601366 71606717 -90993213 - L1P2 LINE L1 -722 5433 1 3689 102 18 0 chrX 71606717 71606900 -90993030 - L1PB1 LINE L1 -177 5974 5796 315 0 0 0 chrX 71606900 71606935 -90992995 + (TA)n Simple_repeat Simple_repeat 2 36 0 3689 102 18 0 chrX 71606935 71607319 -90992611 - L1PB1 LINE L1 -355 5796 5397 307 277 0 0 chrX 71607325 71607426 -90992504 - L1 LINE L1 -1071 5075 4975 * 11386 204 25 33 chrX 71607415 71609130 -90990800 - L1PBa LINE L1 -1014 5848 4120 2178 138 0 0 chrX 71609130 71609442 -90990488 - AluSx SINE Alu 0 312 1 1839 155 7 0 chrX 71609442 71609719 -90990211 - AluSq SINE Alu -34 279 1 11386 204 25 33 chrX 71609719 71611250 -90988680 - L1PBa LINE L1 -2740 4122 2632 1388 208 30 48 chrX 71611367 71611762 -90988168 + LTR55 LTR ERV 3 390 -158 1417 118 90 0 chrX 71611792 71612003 -90987927 - MER30 DNA MER1_type 0 230 1 981 191 0 12 chrX 71612279 71612441 -90987489 + FRAM SINE Alu 1 155 -21 426 20 0 0 chrX 71613644 71613695 -90986235 + (TG)n Simple_repeat Simple_repeat 1 51 0 1042 132 49 15 chrX 71613695 71613899 -90986031 - L1MA8 LINE L1 -140 6151 5941 2007 212 31 15 chrX 71614520 71614997 -90984933 + Tigger1 DNA MER2_type 111 595 -1823 5039 69 1 8 chrX 71614997 71615723 -90984207 - L1P LINE L1 -1772 4374 3654 2668 219 38 7 chrX 71615830 71616411 -90983519 - MSTA-int LTR MaLR -424 1227 629 803 129 27 0 chrX 71616408 71616555 -90983375 - MSTA-int LTR MaLR -1500 151 1 * 2117 156 72 10 chrX 71616555 71616958 -90982972 - MSTA LTR MaLR 0 428 1 894 243 14 7 chrX 71616958 71617238 -90982692 - L1PBa LINE L1 -4964 1898 1617 1878 201 25 5 chrX 71667239 71670318 -90929612 + L1PB1 LINE L1 2924 6103 -48 493 122 47 9 chrX 71670426 71670533 -90929397 + L1PB2 LINE L1 6038 6148 -3 478 203 113 8 chrX 71670535 71670668 -90929262 + L1MC3 LINE L1 7632 7778 -7 1081 266 74 33 chrX 71670685 71671263 -90928667 + L1M4 LINE L1 2111 2712 -3434 2185 119 74 3 chrX 71671276 71671628 -90928302 + MER51B LTR ERV1 1 377 0 366 93 0 0 chrX 71671628 71671682 -90928248 + MER51B-int LTR ERV1 1 54 -7762 * 6421 133 62 32 chrX 71671669 71672950 -90926980 + MER51B-int LTR ERV1 2008 3326 -4490 284 114 43 14 chrX 71672932 71673002 -90926928 + MER51B-int LTR ERV1 3634 3705 -4111 * 26803 134 21 26 chrX 71673002 71677612 -90922318 - L1PA7 LINE L1 -4 6465 1790 219 88 0 0 chrX 71677612 71677646 -90922284 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 26803 134 21 26 chrX 71677646 71679429 -90920501 - L1PA7 LINE L1 -4679 1790 1 1428 188 62 8 chrX 71679445 71679851 -90920079 + MER51B-int LTR ERV1 1539 3172 -2774 * 1557 135 64 6 chrX 71679836 71680223 -90919707 + MER51B-int LTR ERV1 2210 2663 -2554 319 172 0 0 chrX 71680206 71680264 -90919666 + MER51B-int LTR ERV1 5249 5306 -2231 * 30467 40 0 1 chrX 71680265 71684184 -90915746 + L1P LINE L1 1123 5039 -1107 632 303 28 35 chrX 71684905 71685301 -90914629 - PRIMA41-int LTR ERV1 -2001 5755 5363 687 170 92 0 chrX 71685396 71685537 -90914393 + MSTA LTR MaLR 1 154 -274 699 124 0 0 chrX 71685546 71685651 -90914279 + MSTA LTR MaLR 324 428 0 1427 243 15 0 chrX 71687219 71687561 -90912369 + L1M1 LINE L1 502 848 -6717 777 202 0 0 chrX 71687558 71687731 -90912199 - L1 LINE L1 -1434 4712 4540 * 33394 91 14 33 chrX 71687735 71694006 -90905924 - L1PA6 LINE L1 -1 6153 6 824 104 17 0 chrX 71694025 71694140 -90905790 - AluSg/x SINE Alu -7 305 189 19137 111 20 8 chrX 71694150 71697994 -90901936 - L1PA7 LINE L1 0 6469 2585 7713 136 38 15 chrX 71697997 71699770 -90900160 - L1PA7 LINE L1 -3975 2486 682 40201 41 22 1 chrX 71699770 71705799 -90894131 + L1PA2 LINE L1 1 6155 0 305 179 0 0 chrX 71705799 71705855 -90894075 + MER51B-int LTR ERV1 5294 5349 -2188 * 6969 150 51 23 chrX 71705851 71707761 -90892169 + MER51B-int LTR ERV1 5625 7815 -1 2291 112 59 6 chrX 71707763 71708121 -90891809 + MER51B LTR ERV1 1 377 0 737 281 81 5 chrX 71708125 71708560 -90891370 + L1M4 LINE L1 2734 3201 -2945 1966 225 3 3 chrX 71708660 71709051 -90890879 + L1PA13 LINE L1 132 522 -6265 9279 38 0 100 chrX 71709056 71709443 -90890487 - L1P LINE L1 -909 5237 4813 2281 71 0 0 chrX 71709443 71709738 -90890192 - L1PA3 LINE L1 -3 6152 5858 9279 38 0 100 chrX 71709738 71710807 -90889123 - L1P LINE L1 -1333 4813 3927 7363 40 0 0 chrX 71710807 71711701 -90888229 + L1PA4 LINE L1 5262 6155 0 6867 246 151 19 chrX 71711744 71713665 -90886265 + L1PA13 LINE L1 521 2188 -4609 6673 76 6 0 chrX 71713665 71714923 -90885007 + L1PA7 LINE L1 4890 6152 -2 6867 246 151 19 chrX 71714923 71716313 -90883617 + L1PA13 LINE L1 2188 3394 -3403 343 0 43 0 chrX 71716313 71716360 -90883570 + (CA)n Simple_repeat Simple_repeat 2 50 0 6867 246 151 19 chrX 71716360 71717092 -90882838 + L1PA13 LINE L1 3394 5105 -1692 16026 98 9 25 chrX 71717093 71720249 -90879681 + L1PA6 LINE L1 3016 6151 -3 4438 178 22 2 chrX 71720249 71721566 -90878364 + L1MA3 LINE L1 4788 6128 -177 4403 237 26 9 chrX 71721576 71723179 -90876751 - L1PA15-16 LINE L1 -2541 4321 2687 5487 168 10 2 chrX 71723188 71724923 -90875007 - L1PB1 LINE L1 -1 6866 5117 461 127 0 0 chrX 71724921 71724992 -90874938 - L1PB1 LINE L1 -2070 4792 4722 * 686 65 0 0 chrX 71725001 71725093 -90874837 + L1PBa LINE L1 2877 2968 -3895 2777 180 7 15 chrX 71725151 71725689 -90874241 - L1PB1 LINE L1 -5696 1167 634 1165 135 5 0 chrX 71725689 71725882 -90874048 - L1PB1 LINE L1 -6663 200 7 5352 217 26 15 chrX 71725890 71727569 -90872361 - L1PA15-16 LINE L1 -4220 2643 1859 2080 134 3 0 chrX 71727569 71727860 -90872070 - AluSq SINE Alu -21 292 1 5352 217 26 15 chrX 71727860 71729736 -90870194 - L1PA15-16 LINE L1 -5004 1859 6 284 246 0 0 chrX 71729738 71729795 -90870135 + L1M4 LINE L1 4098 4154 -1992 456 242 35 143 chrX 71729939 71730311 -90869619 + L1MEc LINE L1 442 773 -5623 268 207 0 58 chrX 71730385 71730472 -90869458 + A-rich Low_complexity Low_complexity 2 83 0 * 350 274 52 33 chrX 71730456 71730668 -90869262 + L1M4b LINE L1 1206 1421 -5438 338 354 101 0 chrX 71730670 71730828 -90869102 + L1M4 LINE L1 702 875 -5667 736 226 67 97 chrX 71730831 71731472 -90868458 - L1M4 LINE L1 -2836 3546 2925 870 115 0 0 chrX 71731474 71731604 -90868326 + L1PA13 LINE L1 6026 6155 -8 30 0 0 0 chrX 71731604 71731634 -90868296 + AT_rich Low_complexity Low_complexity 1 30 0 871 248 84 6 chrX 71731656 71732089 -90867841 - L1M4 LINE L1 -3645 2737 2275 846 167 6 6 chrX 71732153 71732315 -90867615 - L1MB3 LINE L1 -1 6182 6021 5657 107 7 48 chrX 71732315 71733433 -90866497 + L1PA13 LINE L1 5080 6163 0 3067 195 61 14 chrX 71733447 71734135 -90865795 - L1MB3 LINE L1 -149 6034 5315 200 244 0 0 chrX 71734148 71734189 -90865741 + (TA)n Simple_repeat Simple_repeat 2 42 0 1349 263 58 33 chrX 71734440 71734817 -90865113 - L1ME1 LINE L1 -92 6074 5680 1940 129 0 4 chrX 71734817 71735129 -90864801 - AluSq SINE Alu 0 316 6 1349 263 58 33 chrX 71735129 71735229 -90864701 - L1ME1 LINE L1 -486 5680 5584 1826 197 48 40 chrX 71735247 71735749 -90864181 - L1MA7 LINE L1 0 6291 5786 12966 175 19 16 chrX 71735749 71737776 -90862154 - Tigger1 DNA MER2_type 0 2418 380 7258 49 14 1 chrX 71737776 71739232 -90860698 - L1PA5 LINE L1 -7 6147 4683 12966 175 19 16 chrX 71739232 71739613 -90860317 - Tigger1 DNA MER2_type -2038 380 2 331 140 0 54 chrX 71739648 71739722 -90860208 - L1MA7 LINE L1 -608 5548 5490 * 1410 208 7 7 chrX 71739709 71740002 -90859928 - L1M2 LINE L1 -526 5765 5473 22 56 0 0 chrX 71740019 71740055 -90859875 + AT_rich Low_complexity Low_complexity 1 36 0 7096 222 27 10 chrX 71740090 71741566 -90858364 - L1PB4 LINE L1 -3 6468 4926 1539 183 40 4 chrX 71741566 71741749 -90858181 - AluSx SINE Alu 0 322 123 189 0 0 0 chrX 71741749 71741770 -90858160 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 1539 183 40 4 chrX 71741770 71741898 -90858032 - AluSx SINE Alu -199 123 1 7096 222 27 10 chrX 71741898 71743090 -90856840 - L1PB4 LINE L1 -1545 4926 3756 1137 134 0 10 chrX 71743105 71743299 -90856631 - L1MA2 LINE L1 0 6304 6113 431 91 61 0 chrX 71743299 71743365 -90856565 - MSTA LTR MaLR -1 427 358 2088 169 36 6 chrX 71744659 71745020 -90854910 - MSTA LTR MaLR -56 372 1 934 141 23 0 chrX 71745020 71745197 -90854733 - L1MA2 LINE L1 -186 6118 5938 * 3864 261 32 22 chrX 71745188 71746791 -90853139 - L1PB4 LINE L1 -2695 3766 2146 3329 120 11 2 chrX 71746780 71747246 -90852684 - L1PB4 LINE L1 -5991 470 1 * 577 133 142 0 chrX 71747249 71747362 -90852568 - L1PBa LINE L1 -4385 2478 2350 305 109 0 0 chrX 71747360 71747406 -90852524 + L1P5 LINE L1 5764 5809 -342 * 6453 151 1 5 chrX 71747399 71748469 -90851461 + L1P LINE L1 1934 2999 -3147 4003 195 1 20 chrX 71748465 71749205 -90850725 - L1PBa LINE L1 -5149 1127 402 * 3160 179 11 3 chrX 71749205 71750279 -90849651 - L1M1 LINE L1 -615 5687 4604 248 196 0 0 chrX 71750279 71750330 -90849600 - MADE1 DNA Mariner 0 80 30 * 1049 78 0 0 chrX 71750324 71750465 -90849465 + MLT2A1 LTR ERVL 222 362 -82 42620 34 21 2 chrX 71750466 71756499 -90843431 + L1HS LINE L1 4 6155 0 7976 211 22 10 chrX 71756517 71758445 -90841485 - L1M1 LINE L1 -1541 4605 2655 1690 236 12 2 chrX 71758449 71758848 -90841082 + L1P LINE L1 2462 2864 -3282 * 2372 166 29 0 chrX 71758843 71759302 -90840628 + L1PA13 LINE L1 5222 5691 -472 13338 222 39 20 chrX 71759310 71761207 -90838723 + L1PB1 LINE L1 6 1866 -5001 2377 103 0 0 chrX 71761207 71761518 -90838412 + AluY SINE Alu 1 311 0 13338 222 39 20 chrX 71761518 71762469 -90837461 + L1PB1 LINE L1 1866 2797 -4070 10771 40 0 4 chrX 71762469 71764546 -90835384 + L1PA4 LINE L1 4082 6155 0 13338 222 39 20 chrX 71764546 71767945 -90831985 + L1PB1 LINE L1 2797 6507 -360 828 106 2 37 chrX 71767945 71768416 -90831514 + (TA)n Simple_repeat Simple_repeat 1 454 0 2044 156 3 13 chrX 71768416 71768437 -90831493 + L1PB1 LINE L1 6492 6512 -355 1221 62 0 0 chrX 71768437 71768613 -90831317 + (TA)n Simple_repeat Simple_repeat 1 176 0 2044 156 3 13 chrX 71768613 71768963 -90830967 + L1PB1 LINE L1 6512 6859 -8 28 0 0 0 chrX 71768970 71768998 -90830932 + AT_rich Low_complexity Low_complexity 1 28 0 3039 134 4 4 chrX 71768998 71769476 -90830454 + L1PA13 LINE L1 5675 6152 -11 1588 186 69 49 chrX 71769478 71769930 -90830000 + L1MA9 LINE L1 5816 6276 -36 1772 241 70 76 chrX 71769953 71770420 -90829510 + L1MEc LINE L1 1010 1478 -4918 1727 200 7 7 chrX 71770420 71770725 -90829205 - AluJb SINE Alu -7 305 1 1772 241 70 76 chrX 71770725 71771481 -90828449 + L1MEc LINE L1 1478 2226 -4170 * 10823 231 37 3 chrX 71771466 71773166 -90826764 + L1M1 LINE L1 23 1822 -5743 384 40 0 0 chrX 71773166 71773216 -90826714 + (GA)n Simple_repeat Simple_repeat 1 50 0 10823 231 37 3 chrX 71773216 71773787 -90826143 + L1M1 LINE L1 1822 2372 -5193 1841 64 24 12 chrX 71773759 71774008 -90825922 + L1PA4 LINE L1 7209 7460 -114 * 280 57 75 0 chrX 71774372 71774425 -90825505 + T-rich Low_complexity Low_complexity 5 61 0 3640 151 12 5 chrX 71774539 71775196 -90824734 + L1M1 LINE L1 2490 3151 -4414 14239 138 9 34 chrX 71775204 71778607 -90821323 + L1P3 LINE L1 4 3396 -3065 4657 116 33 17 chrX 71778609 71780667 -90819263 + L1PA5 LINE L1 8 2032 -4437 4657 46 0 0 chrX 71780667 71781234 -90818696 + L1PA5 LINE L1 5903 6469 0 1748 192 3 16 chrX 71781237 71781612 -90818318 + L1MB3 LINE L1 5814 6183 0 4657 116 33 17 chrX 71781612 71785030 -90814900 + L1PA5 LINE L1 2033 6469 0 21 57 0 0 chrX 71785034 71785069 -90814861 + AT_rich Low_complexity Low_complexity 1 35 0 39291 50 23 1 chrX 71785069 71791085 -90808845 - L1PA3 LINE L1 -4 6151 3 5311 110 0 0 chrX 71791085 71791839 -90808091 + L1PA7 LINE L1 5398 6151 -3 11916 200 21 20 chrX 71791848 71791984 -90807946 + L1MA2 LINE L1 3140 3274 -4449 1858 192 3 0 chrX 71791984 71792292 -90807638 - AluSx SINE Alu -3 309 1 11916 200 21 20 chrX 71792292 71793217 -90806713 + L1MA2 LINE L1 3274 4197 -3526 1996 148 0 3 chrX 71793217 71793508 -90806422 + AluSx SINE Alu 1 290 -22 11916 200 21 20 chrX 71793508 71796507 -90803423 + L1MA2 LINE L1 4197 7199 -524 5616 118 6 0 chrX 71796503 71797392 -90802538 - L1PA8 LINE L1 -1166 4980 4087 * 6131 110 7 2 chrX 71797392 71798564 -90801366 + L1PA8 LINE L1 4995 6172 0 3111 143 13 2 chrX 71798564 71799091 -90800839 + L1MA2 LINE L1 7185 7723 0 21 36 0 0 chrX 71799128 71799156 -90800774 + AT_rich Low_complexity Low_complexity 1 28 0 8302 217 48 26 chrX 71799255 71800832 -90799098 + L1M3f LINE L1 2 1543 -4785 4967 9 0 0 chrX 71800832 71801392 -90798538 + L1PA2 LINE L1 5594 6153 -2 8302 217 48 26 chrX 71801392 71801415 -90798515 + L1M3f LINE L1 1543 1564 -4764 1200 98 40 0 chrX 71801415 71801589 -90798341 + L1PA7 LINE L1 5961 6141 -13 8302 217 48 26 chrX 71801589 71803106 -90796824 + L1M3f LINE L1 1564 3046 -3282 2526 33 7 3 chrX 71803106 71803408 -90796522 - AluY SINE Alu -8 303 1 8302 217 48 26 chrX 71803408 71804927 -90795003 + L1M3f LINE L1 3046 4733 -1595 4015 158 3 4 chrX 71804930 71805622 -90794308 + L1PA7 LINE L1 5 695 -5766 40194 42 22 1 chrX 71805655 71811679 -90788251 - L1PA2 LINE L1 -4 6151 1 7713 136 38 15 chrX 71811679 71813452 -90786478 + L1PA7 LINE L1 682 2486 -3975 19125 111 4 6 chrX 71813455 71817299 -90782631 + L1PA7 LINE L1 2585 6469 0 824 104 17 0 chrX 71817309 71817424 -90782506 + AluSg/x SINE Alu 189 305 -7 33394 91 14 33 chrX 71817443 71823714 -90776216 + L1PA6 LINE L1 6 6153 -1 777 202 0 0 chrX 71823718 71823891 -90776039 + L1 LINE L1 4540 4712 -1434 * 1427 243 15 0 chrX 71823888 71824230 -90775700 - L1M1 LINE L1 -6717 848 502 699 124 0 0 chrX 71825798 71825903 -90774027 - MSTA LTR MaLR 0 428 324 687 170 92 0 chrX 71825912 71826053 -90773877 - MSTA LTR MaLR -274 154 1 632 303 28 35 chrX 71826148 71826544 -90773386 + MER50-int LTR ERV1 5363 5755 -2001 5665 196 15 11 chrX 71827994 71829143 -90770787 + MER50-int LTR ERV1 3891 7196 -9 318 300 92 8 chrX 71829143 71829263 -90770667 + MER50 LTR ERV1 1 130 -604 1671 251 113 40 chrX 71829286 71829879 -90770051 + MER50 LTR ERV1 79 714 -20 7110 215 24 17 chrX 71829879 71831782 -90768148 + L1MA8 LINE L1 2458 4374 -1772 1832 207 47 26 chrX 71831783 71832275 -90767655 + L1MA8 LINE L1 5788 6289 -2 1743 201 47 33 chrX 71833666 71834011 -90765919 - L1 LINE L1 -2659 3723 3366 690 142 0 0 chrX 71834011 71834117 -90765813 - U6 snRNA snRNA -1 106 1 1743 201 47 33 chrX 71834117 71834323 -90765607 - L1 LINE L1 -3016 3366 3164 1531 40 0 0 chrX 71834346 71834521 -90765409 - AluY SINE Alu -29 282 108 1300 124 0 5 chrX 71834629 71834830 -90765100 + AluY SINE Alu 103 302 -9 1670 251 55 46 chrX 71834850 71835049 -90764881 - L1 LINE L1 -3404 2978 2782 1939 141 0 49 chrX 71835049 71835375 -90764555 - AluSx SINE Alu -2 310 1 1670 251 55 46 chrX 71835375 71836404 -90763526 - L1 LINE L1 -3600 2782 1640 1591 217 3 20 chrX 71836404 71836704 -90763226 - AluJb SINE Alu -17 295 1 1670 251 55 46 chrX 71836704 71837036 -90762894 - L1 LINE L1 -4742 1640 1313 1294 154 4 0 chrX 71837045 71837278 -90762652 - L1MA2 LINE L1 0 6304 6071 3372 225 55 43 chrX 71837323 71838850 -90761080 - L1 LINE L1 -1150 6415 4819 25433 149 25 70 chrX 71838851 71839472 -90760458 - L1HS LINE L1 -20 6135 5488 1996 123 0 27 chrX 71839472 71839764 -90760166 - AluSg SINE Alu -26 284 1 25433 149 25 70 chrX 71839764 71845559 -90754371 - L1HS LINE L1 -667 5488 12 4035 221 35 4 chrX 71845571 71847073 -90752857 - L1 LINE L1 -2732 4833 3276 306 0 0 0 chrX 71847073 71847107 -90752823 + (CA)n Simple_repeat Simple_repeat 1 34 0 4035 221 35 4 chrX 71847107 71847299 -90752631 - L1 LINE L1 -4289 3276 3091 373 250 25 50 chrX 71847800 71847960 -90751970 + L1ME LINE L1 10 165 -5905 353 250 109 8 chrX 71848180 71848308 -90751622 + MER67C LTR ERV1 211 351 -359 809 204 44 9 chrX 71848315 71848540 -90751390 + MER67C LTR ERV1 476 708 -2 2066 136 0 37 chrX 71849697 71850021 -90749909 + AluSx SINE Alu 1 312 0 2035 200 69 0 chrX 71851170 71851664 -90748266 - L1 LINE L1 -1568 4578 4051 228 48 0 95 chrX 71851674 71851716 -90748214 - L1 LINE L1 -2194 3952 3915 4598 222 35 47 chrX 71851730 71852631 -90747299 + L1M3f LINE L1 14 924 -5031 704 142 30 30 chrX 71852631 71852765 -90747165 + L1PA16 LINE L1 6030 6163 -3 4598 222 35 47 chrX 71852765 71853017 -90746913 + L1M3f LINE L1 924 1178 -4777 6562 51 1 0 chrX 71853017 71853826 -90746104 + L1PA6 LINE L1 5345 6154 0 4598 222 35 47 chrX 71853826 71854556 -90745374 + L1M3f LINE L1 1178 1890 -4065 654 168 0 0 chrX 71854558 71854665 -90745265 + AluSg/x SINE Alu 199 305 -7 1760 224 43 0 chrX 71854694 71855158 -90744772 + L1M3f LINE L1 2440 2923 -3405 1865 153 22 0 chrX 71855179 71855481 -90744449 - AluSx SINE Alu 0 308 1 1449 148 126 4 chrX 71856267 71856545 -90743385 + MER4B LTR ERV1 65 376 -234 989 118 15 0 chrX 71856553 71856689 -90743241 + AluSg/x SINE Alu 154 291 -19 8501 193 136 34 chrX 71856752 71859685 -90740245 + L1PBa LINE L1 6 3236 -3626 279 0 0 0 chrX 71859687 71859718 -90740212 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 5167 78 36 56 chrX 71859718 71860546 -90739384 + SVA Other Other 57 868 -518 3953 219 56 10 chrX 71860695 71862619 -90737311 - L1PBa LINE L1 -4682 2181 8 15346 196 64 26 chrX 71862646 71866738 -90733192 - L1 LINE L1 -3301 4264 12 1734 156 14 3 chrX 71866735 71867095 -90732835 - L1 LINE L1 -2130 4016 3653 * 708 236 19 19 chrX 71867585 71867797 -90732133 + PABL_B LTR ERV1 456 667 0 1012 204 115 3 chrX 71867798 71868112 -90731818 - L1 LINE L1 -2486 3660 3312 1549 146 0 0 chrX 71868117 71868363 -90731567 - MER4B LTR ERV1 -4 606 361 29 28 0 0 chrX 71868363 71868399 -90731531 + AT_rich Low_complexity Low_complexity 1 36 0 2360 115 3 11 chrX 71868399 71868763 -90731167 - L1PB1 LINE L1 -8 6143 5783 391 202 0 43 chrX 71868781 71868875 -90731055 - L1MC4 LINE L1 -1339 6703 6614 3775 180 17 10 chrX 71868884 71869791 -90730139 - L1P5 LINE L1 -360 5791 4871 197 33 33 0 chrX 71869791 71869821 -90730109 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3775 180 17 10 chrX 71869821 71870383 -90729547 - L1P5 LINE L1 -1280 4871 4315 * 27724 40 3 0 chrX 71870382 71874748 -90725182 + L1PA3 LINE L1 1780 6155 0 6746 222 16 10 chrX 71874743 71876555 -90723375 - L1 LINE L1 -1812 4334 2512 * 6789 62 5 42 chrX 71876561 71877552 -90722378 - SVA Other Other 0 1386 433 9118 69 11 1 chrX 72077591 72078799 -90521131 + L1P LINE L1 3969 5188 -958 1470 45 0 0 chrX 72078796 72078974 -90520956 - L1P2 LINE L1 -546 5608 5431 * 1082 119 57 0 chrX 72078989 72079183 -90520747 + L1P LINE L1 5186 5390 -756 10113 114 8 21 chrX 72079283 72081045 -90518885 + L1PA11 LINE L1 324 2088 -4373 6108 118 3 2 chrX 72081147 72082927 -90517003 + L1PA11 LINE L1 4740 6489 0 817 175 21 26 chrX 72083136 72083330 -90516600 - L1MA4A LINE L1 -4 6299 6107 24389 106 7 20 chrX 72083440 72087144 -90512786 - L1P LINE L1 -2479 3667 13 1081 303 15 19 chrX 72087142 72087611 -90512319 + L1M4 LINE L1 3376 3842 -2304 * 464 244 0 0 chrX 72087632 72087747 -90512183 + L1M4 LINE L1 3950 4064 -2082 236 316 0 0 chrX 72087753 72087829 -90512101 - L1MEc LINE L1 -1996 4430 4355 1852 290 67 28 chrX 72087894 72088665 -90511265 - L1MEc LINE L1 -2695 3731 2886 3465 73 11 2 chrX 72088665 72089129 -90510801 - L1PA7 LINE L1 -18 6136 5669 1852 290 67 28 chrX 72089129 72089634 -90510296 - L1MEc LINE L1 -3540 2886 2402 8319 183 20 7 chrX 72089636 72092414 -90507516 - L1PB1 LINE L1 -5 6146 3327 2417 250 175 12 chrX 72092405 72093633 -90506297 - L1MEc LINE L1 -4048 2378 951 * 24 0 0 0 chrX 72094083 72094107 -90505823 + AT_rich Low_complexity Low_complexity 1 24 0 542 313 18 31 chrX 72094333 72094565 -90505365 + L1PA16 LINE L1 1 1007 -6567 411 328 42 5 chrX 72094564 72094753 -90505177 + L1PA16 LINE L1 2179 2374 -5207 * 1910 273 42 5 chrX 72094763 72095482 -90504448 + L1PA16 LINE L1 2432 3185 -4399 8624 247 78 6 chrX 72095492 72098392 -90501538 + L1PA16 LINE L1 3786 6910 -694 402 173 0 0 chrX 72098393 72098468 -90501462 - AluJ/FRAM SINE Alu 0 302 228 3406 180 32 9 chrX 72098474 72098802 -90501128 + L1PA16 LINE L1 6902 7221 -383 1812 183 72 15 chrX 72098802 72099207 -90500723 - MSTA LTR MaLR 0 428 1 3406 180 32 9 chrX 72099207 72099562 -90500368 + L1PA16 LINE L1 7221 7601 -3 8837 182 26 28 chrX 72099891 72100420 -90499510 - L1MA1 LINE L1 -8 7713 7184 369 0 0 0 chrX 72100420 72100461 -90499469 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1796 72 128 0 chrX 72100461 72100710 -90499220 - AluY SINE Alu -30 281 1 8837 182 26 28 chrX 72100710 72102396 -90497534 - L1MA1 LINE L1 -536 7185 5500 6980 56 7 0 chrX 72102396 72103497 -90496433 + L1PA7 LINE L1 5045 6151 -3 8837 182 26 28 chrX 72103497 72104391 -90495539 - L1MA1 LINE L1 -2221 5500 4605 958 196 29 5 chrX 72104394 72104598 -90495332 - L1MA1 LINE L1 -7340 225 17 27 49 0 0 chrX 72104793 72104834 -90495096 + AT_rich Low_complexity Low_complexity 1 41 0 305 223 11 0 chrX 72104871 72104965 -90494965 + (TA)n Simple_repeat Simple_repeat 2 96 0 22 56 0 0 chrX 72105002 72105038 -90494892 + AT_rich Low_complexity Low_complexity 1 36 0 454 287 19 13 chrX 72106173 72106330 -90493600 + MER103 DNA DNA 2 159 -7 23 0 0 0 chrX 72106748 72106771 -90493159 + AT_rich Low_complexity Low_complexity 1 23 0 958 316 92 46 chrX 72107148 72107603 -90492327 + MER115 DNA AcHobo 217 692 -1 2143 187 12 22 chrX 72107845 72108352 -90491578 + L1P LINE L1 2761 3262 -2884 455 114 0 1 chrX 72108522 72108598 -90491332 - L1MA4 LINE L1 -185 6117 6038 3881 168 28 3 chrX 72108952 72109697 -90490233 - L1MA3 LINE L1 0 7724 6961 2306 136 0 29 chrX 72109698 72110073 -90489857 + THE1B LTR MaLR 1 364 0 1477 237 56 91 chrX 72110088 72110716 -90489214 + LTR9 LTR ERV1 1 606 -6 4787 135 56 0 chrX 72110720 72111470 -90488460 + THE1B-int LTR MaLR 10 801 -779 4210 215 20 30 chrX 72111474 72112649 -90487281 - L1MA3 LINE L1 -774 6791 5629 5799 275 59 9 chrX 72112652 72112728 -90487202 - L1MA3 LINE L1 -5714 1851 1780 327 25 0 0 chrX 72112728 72112768 -90487162 + (TC)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chrX 72112772 72112806 -90487124 + (TG)n Simple_repeat Simple_repeat 1 34 0 5799 275 59 9 chrX 72112806 72114126 -90485804 - L1MA3 LINE L1 -5787 1778 379 227 219 0 0 chrX 72115943 72115984 -90483946 - L3 LINE CR1 -2 1575 1535 3231 137 14 19 chrX 72116015 72116631 -90483299 - MER4B LTR ERV1 0 779 1 688 307 71 11 chrX 72116716 72116983 -90482947 - L3 LINE CR1 -220 1357 1075 240 35 0 0 chrX 72117752 72117781 -90482149 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2838 80 3 0 chrX 72118268 72118654 -90481276 - L1PA7 LINE L1 -1 6153 5767 1868 228 27 9 chrX 72118768 72119219 -90480711 + L1P4 LINE L1 4693 5151 -995 824 204 0 21 chrX 72119231 72119417 -90480513 + L1P LINE L1 2408 2589 -3557 1742 140 57 17 chrX 72119417 72119832 -90480098 + L1P4 LINE L1 5157 5583 -582 3814 249 57 58 chrX 72120006 72122585 -90477345 - L1PA15-16 LINE L1 -2919 3930 1348 2755 157 0 2 chrX 72123326 72123773 -90476157 - L1PA15 LINE L1 0 6165 5720 7356 243 41 49 chrX 72123873 72124208 -90475722 - L1PA13 LINE L1 -2290 4507 4171 2280 110 0 0 chrX 72124208 72124517 -90475413 - AluSc SINE Alu 0 309 1 7356 243 41 49 chrX 72124517 72127459 -90472471 - L1PA13 LINE L1 -2626 4171 1243 4387 219 48 18 chrX 72127572 72128251 -90471679 - L1PA15-16 LINE L1 -4460 2389 1663 375 23 0 0 chrX 72128251 72128295 -90471635 + (TC)n Simple_repeat Simple_repeat 1 44 0 4387 219 48 18 chrX 72128295 72128699 -90471231 - L1PA15-16 LINE L1 -5186 1663 1273 1899 184 49 7 chrX 72129001 72129425 -90470505 - MER61C LTR ERV1 -3 431 2 414 38 0 0 chrX 72129425 72129478 -90470452 - MER61C-int LTR ERV1 -4 5213 5161 24818 108 42 43 chrX 72129522 72130379 -90469551 - MER61C-int LTR ERV1 -35 5182 4325 182 172 188 47 chrX 72130379 72130443 -90469487 - L2 LINE L2 -536 2778 2706 24818 108 42 43 chrX 72130443 72132277 -90467653 - MER61C-int LTR ERV1 -892 4325 2435 2045 159 0 0 chrX 72132277 72132578 -90467352 - AluSx SINE Alu -11 301 1 24818 108 42 43 chrX 72132578 72134163 -90465767 - MER61C-int LTR ERV1 -2782 2435 849 1769 186 94 3 chrX 72134166 72134548 -90465382 - MLT1C LTR MaLR -50 417 1 3081 213 30 4 chrX 72135321 72136076 -90463854 + L1 LINE L1 3530 4304 -1842 * 4667 246 22 39 chrX 72136068 72138191 -90461739 - L1PA12 LINE L1 -3809 3775 866 4929 120 185 88 chrX 72138238 72139653 -90460277 + pTR5 LTR ERV1 276 2295 -143 1517 279 50 22 chrX 72139653 72140190 -90459740 - L1PA12 LINE L1 -7029 552 1 3966 193 33 31 chrX 72140217 72141466 -90458464 - L1MA8 LINE L1 -5 6350 5109 2101 176 66 22 chrX 72141467 72141875 -90458055 - MSTA LTR MaLR -2 426 1 7863 216 12 6 chrX 72141875 72143517 -90456413 - MSTA-int LTR MaLR 0 1651 1 1512 203 96 8 chrX 72143519 72143893 -90456037 - MSTA LTR MaLR -2 426 20 1186 101 0 0 chrX 72143893 72144052 -90455878 + THE1B LTR MaLR 1 159 -205 279 181 0 0 chrX 72144080 72144152 -90455778 + (TTTAA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chrX 72144152 72144175 -90455755 + AT_rich Low_complexity Low_complexity 1 23 0 1071 168 9 58 chrX 72144175 72144401 -90455529 + THE1B LTR MaLR 149 363 -1 10530 111 27 13 chrX 72144402 72145254 -90454676 + THE1B-int LTR MaLR 1 886 -694 2328 115 0 3 chrX 72145254 72145567 -90454363 + AluSx SINE Alu 1 312 0 10530 111 27 13 chrX 72145567 72146272 -90453658 + THE1B-int LTR MaLR 886 1580 0 2282 128 33 19 chrX 72146272 72146631 -90453299 + THE1B LTR MaLR 1 364 0 7947 225 29 26 chrX 72146659 72148750 -90451180 - L1MA8 LINE L1 -1097 5113 3012 5207 147 6 1 chrX 72148750 72150235 -90449695 - L1PA16 LINE L1 -1 6165 4685 7947 225 29 26 chrX 72150235 72150641 -90449289 - L1MA8 LINE L1 -3198 3012 2609 433 256 57 18 chrX 72150657 72150884 -90449046 - L1MA8 LINE L1 -4825 1316 1081 802 255 54 65 chrX 72150886 72151255 -90448675 - MLT1A1 LTR MaLR 0 365 1 2730 257 24 86 chrX 72151255 72152240 -90447690 - MLT1A1-int LTR MaLR -1 1734 811 5007 239 21 72 chrX 72152303 72152895 -90447035 - MLT1A1-int LTR MaLR -5 1730 1109 2109 106 13 3 chrX 72152895 72153197 -90446733 - AluSc SINE Alu 0 309 5 5007 239 21 72 chrX 72153197 72154155 -90445775 - MLT1A1-int LTR MaLR -626 1109 260 402 235 0 34 chrX 72154125 72154244 -90445686 - MLT1A1-int LTR MaLR -1256 115 1 * 1326 255 11 50 chrX 72154244 72154624 -90445306 - MLT1A1 LTR MaLR 0 365 1 493 238 20 99 chrX 72154626 72154828 -90445102 - L1M4b LINE L1 -5743 1116 931 180 77 0 0 chrX 72154939 72154965 -90444965 + (TG)n Simple_repeat Simple_repeat 1 26 0 315 342 52 16 chrX 72155227 72155420 -90444510 - L1M4b LINE L1 -6649 210 11 2469 175 13 2 chrX 72155501 72155963 -90443967 + L1PB4 LINE L1 5688 6154 -2 2355 73 0 32 chrX 72157413 72157726 -90442204 - AluY SINE Alu -8 303 1 233 261 197 83 chrX 72157878 72158096 -90441834 - L2 LINE L2 -339 2975 2733 2379 44 0 57 chrX 72158188 72158505 -90441425 + AluY SINE Alu 1 299 -12 432 346 15 7 chrX 72158620 72158756 -90441174 - L2 LINE L2 -556 2758 2622 237 65 0 0 chrX 72159006 72159037 -90440893 + (CA)n Simple_repeat Simple_repeat 2 32 0 491 261 109 0 chrX 72159614 72159752 -90440178 - MIR3 SINE MIR -10 198 46 308 258 82 21 chrX 72160833 72160930 -90439000 - MIR3 SINE MIR -103 105 3 2854 93 3 3 chrX 72161624 72161999 -90437931 + THE1C LTR MaLR 1 375 0 9987 118 33 26 chrX 72161999 72163568 -90436362 + THE1C-int LTR MaLR 1 1580 0 2898 77 3 5 chrX 72163568 72163944 -90435986 + THE1C LTR MaLR 1 375 0 284 313 85 62 chrX 72164559 72164770 -90435160 + L2 LINE L2 687 902 -2412 274 282 51 0 chrX 72164767 72164845 -90435085 - L2 LINE L2 -1 3312 3231 * 180 405 37 24 chrX 72164982 72165278 -90434652 + L2 LINE L2 2571 2870 -444 291 382 130 0 chrX 72165565 72165696 -90434234 + L2 LINE L2 3109 3256 -16 359 202 11 0 chrX 72165785 72165879 -90434051 + GA-rich Low_complexity Low_complexity 2 96 0 790 237 143 29 chrX 72168241 72168549 -90431381 - L1ME3 LINE L1 -8 6154 5812 22 0 0 0 chrX 72171697 72171719 -90428211 + AT_rich Low_complexity Low_complexity 1 22 0 16895 196 38 33 chrX 72172319 72175044 -90424886 - L1PA11 LINE L1 -1 7611 4901 2264 100 6 10 chrX 72175044 72175355 -90424575 - AluY SINE Alu -1 310 1 16895 196 38 33 chrX 72175355 72178387 -90421543 - L1PA11 LINE L1 -2711 4901 1017 5103 215 14 27 chrX 72178384 72179546 -90420384 - L1PA12 LINE L1 -6208 1373 1 * 30 27 0 0 chrX 72179756 72179793 -90420137 + AT_rich Low_complexity Low_complexity 1 37 0 397 344 15 8 chrX 72179839 72179970 -90419960 - MIR3 SINE MIR -5 203 72 216 0 0 0 chrX 72180159 72180183 -90419747 + (CA)n Simple_repeat Simple_repeat 2 25 0 182 407 0 12 chrX 72180187 72180268 -90419662 - MIR3 SINE MIR -127 81 2 180 267 89 33 chrX 72180554 72180644 -90419286 - MIR SINE MIR -51 211 117 345 178 61 1 chrX 72180743 72180974 -90418956 + AluJb SINE Alu 1 277 -25 835 273 56 3 chrX 72181170 72181457 -90418473 + MLT1-int LTR MaLR 27 317 -1054 777 214 138 13 chrX 72181470 72181694 -90418236 + MLT1D LTR MaLR 254 505 0 366 274 24 0 chrX 72181886 72181970 -90417960 - MER5A DNA MER1_type -77 112 27 265 326 81 0 chrX 72182447 72182533 -90417397 + MIR3 SINE MIR 64 156 -52 378 0 0 0 chrX 72182786 72182828 -90417102 + (CA)n Simple_repeat Simple_repeat 2 43 0 828 300 25 4 chrX 72183453 72183693 -90416237 - MIR SINE MIR -2 260 16 1681 164 29 0 chrX 72183709 72183983 -90415947 - AluSx SINE Alu -30 282 1 438 245 20 0 chrX 72184137 72184239 -90415691 - MIR SINE MIR -69 139 36 366 312 32 8 chrX 72184982 72185107 -90414823 - L2 LINE L2 -7 3306 3179 1996 234 41 31 chrX 72185542 72186054 -90413876 - L1MB8 LINE L1 -1 6177 5657 2329 61 6 42 chrX 72186054 72186367 -90413563 - AluY SINE Alu -9 302 1 1996 234 41 31 chrX 72186367 72186468 -90413462 - L1MB8 LINE L1 -521 5657 5558 1558 178 12 45 chrX 72187430 72187762 -90412168 + MSTA-int LTR MaLR 1331 1651 0 2115 174 96 3 chrX 72187768 72188153 -90411777 + MSTA LTR MaLR 8 428 0 1352 211 85 18 chrX 72188153 72188465 -90411465 + MSTA LTR MaLR 95 428 0 4769 208 37 6 chrX 72188638 72189668 -90410262 - Tigger6a DNA MER2_type 0 1083 22 344 325 87 85 chrX 72189996 72190466 -90409464 + L1MEd LINE L1 509 979 -5140 3769 244 65 29 chrX 72190558 72191444 -90408486 + L1M4 LINE L1 6 858 -5684 1415 189 11 0 chrX 72191444 72191709 -90408221 + L1PB4 LINE L1 5888 6155 -1 3769 244 65 29 chrX 72191709 72191941 -90407989 + L1M4 LINE L1 858 1170 -5372 2069 80 14 21 chrX 72191941 72192230 -90407700 + AluSg SINE Alu 1 287 -23 3769 244 65 29 chrX 72192230 72192259 -90407671 + L1M4 LINE L1 1170 1196 -5346 9474 246 43 16 chrX 72192259 72194497 -90405433 - L1PA15 LINE L1 -1 6815 4638 2196 113 7 0 chrX 72194497 72194799 -90405131 - AluSx SINE Alu -8 304 1 9474 246 43 16 chrX 72194799 72199120 -90400810 - L1PA15 LINE L1 -2178 4638 1 1215 262 43 11 chrX 72199130 72199596 -90400334 + L1M4 LINE L1 1191 1671 -4871 229 368 0 13 chrX 72199721 72199797 -90400133 - MIR3 SINE MIR -132 76 2 329 353 53 13 chrX 72200887 72201037 -90398893 - MIR3 SINE MIR -7 201 46 1954 193 47 27 chrX 72201148 72201692 -90398238 + MLT2A2 LTR ERVL 1 554 0 22 0 0 0 chrX 72201825 72201847 -90398083 + AT_rich Low_complexity Low_complexity 1 22 0 462 345 191 13 chrX 72202353 72202735 -90397195 - L2 LINE L2 -4 3309 2860 250 208 19 19 chrX 72202771 72202824 -90397106 - ERVL LTR ERVL -1557 4207 4155 270 336 98 0 chrX 72202966 72203088 -90396842 + ERVL LTR ERVL 2907 3040 -2724 1832 177 11 20 chrX 72203103 72203454 -90396476 + MER7A DNA MER2_type 1 346 0 383 296 37 66 chrX 72203604 72203847 -90396083 + L1M4 LINE L1 4739 4974 -1172 556 215 46 0 chrX 72204015 72204145 -90395785 - L1MC4 LINE L1 -151 7891 7756 1286 125 40 44 chrX 72204156 72204280 -90395650 - L1PA13 LINE L1 -6 6157 6034 2175 82 27 0 chrX 72204280 72204572 -90395358 - AluY SINE Alu -11 300 1 1286 125 40 44 chrX 72204572 72204719 -90395211 - L1PA13 LINE L1 -129 6034 5887 1810 75 29 4 chrX 72204932 72205171 -90394759 - AluSc SINE Alu -64 245 1 1050 128 0 0 chrX 72205171 72205327 -90394603 - L1PA13 LINE L1 -121 6042 5887 * 1354 87 5 0 chrX 72205325 72205509 -90394421 + L1PA13 LINE L1 5696 5880 -283 22 0 0 0 chrX 72206604 72206626 -90393304 + AT_rich Low_complexity Low_complexity 1 22 0 426 291 169 7 chrX 72206877 72207025 -90392905 + MER5B DNA MER1_type 4 175 -3 570 293 123 60 chrX 72207597 72207779 -90392151 - L1M4 LINE L1 -1478 4668 4499 189 0 0 0 chrX 72207779 72207800 -90392130 + (TGG)n Simple_repeat Simple_repeat 1 21 0 570 293 123 60 chrX 72207800 72208217 -90391713 - L1M4 LINE L1 -1647 4499 4031 361 292 89 43 chrX 72208231 72208601 -90391329 - L1M4 LINE L1 -2210 3936 3550 1728 161 0 50 chrX 72208601 72208924 -90391006 + AluJo SINE Alu 5 311 -1 24 67 0 0 chrX 72209023 72209068 -90390862 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chrX 72209178 72209213 -90390717 + AT_rich Low_complexity Low_complexity 1 35 0 1642 198 127 39 chrX 72210066 72210530 -90389400 - LTR22 LTR ERVK -4 505 1 372 356 69 38 chrX 72210909 72211198 -90388732 + L1PBb LINE L1 708 1005 -5845 230 300 11 22 chrX 72211536 72211626 -90388304 + L1PBb LINE L1 1474 1562 -5287 4099 254 34 25 chrX 72211634 72211730 -90388200 + L1PBb LINE L1 1359 1453 -5396 2615 61 0 0 chrX 72211730 72212040 -90387890 + AluY SINE Alu 1 310 -1 4099 254 34 25 chrX 72212040 72213244 -90386686 + L1PBb LINE L1 1453 2751 -4098 12205 241 23 32 chrX 72214133 72215034 -90384896 + L1PB4 LINE L1 1539 2446 -4361 2338 139 17 3 chrX 72215034 72215393 -90384537 + THE1B LTR MaLR 1 364 0 12205 241 23 32 chrX 72215393 72217939 -90381991 + L1PB4 LINE L1 2446 4764 -2043 2387 73 0 17 chrX 72217939 72218240 -90381690 + AluY SINE Alu 2 297 -14 12205 241 23 32 chrX 72218240 72219906 -90380024 + L1PB4 LINE L1 4764 6442 -365 188 238 16 0 chrX 72219906 72219969 -90379961 + (CATA)n Simple_repeat Simple_repeat 3 66 0 255 205 48 6 chrX 72219989 72220155 -90379775 + (TA)n Simple_repeat Simple_repeat 2 174 0 1660 181 24 45 chrX 72220155 72220421 -90379509 + L1PB4 LINE L1 6427 6684 -123 2261 133 43 31 chrX 72220421 72220841 -90379089 - MSTA LTR MaLR -3 425 1 1660 181 24 45 chrX 72220841 72220949 -90378981 + L1PB4 LINE L1 6684 6793 -14 22 35 0 0 chrX 72221069 72221098 -90378832 + AT_rich Low_complexity Low_complexity 1 29 0 2451 132 49 5 chrX 72221241 72221651 -90378279 + MSTA LTR MaLR 1 428 0 1461 138 9 9 chrX 72222006 72222231 -90377699 - AluSx SINE Alu -63 249 25 300 337 86 31 chrX 72222885 72223176 -90376754 + L1M4 LINE L1 2967 3273 -2873 322 365 30 40 chrX 72223426 72223722 -90376208 + HAL1 LINE L1 1 293 -2214 2423 120 8 8 chrX 72224104 72224479 -90375451 + THE1C LTR MaLR 1 375 0 424 231 89 35 chrX 72224578 72224747 -90375183 + HAL1 LINE L1 1415 1592 -915 2010 173 17 5 chrX 72224777 72225182 -90374748 - L1MB1 LINE L1 -2 6166 5757 272 292 100 0 chrX 72225196 72225316 -90374614 + MIR SINE MIR 81 212 -50 21 0 0 0 chrX 72226422 72226443 -90373487 + AT_rich Low_complexity Low_complexity 1 21 0 348 261 61 78 chrX 72226624 72226804 -90373126 - LTR33A LTR ERVL 0 523 347 245 301 233 12 chrX 72227524 72227687 -90372243 - MIR SINE MIR -11 251 53 314 232 0 37 chrX 72227796 72227878 -90372052 + L1MCa LINE L1 1994 2072 -4354 406 346 26 41 chrX 72228032 72228298 -90371632 - MIR SINE MIR 0 262 1 3102 144 27 27 chrX 72229097 72229624 -90370306 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chrX 72231564 72231587 -90368343 + AT_rich Low_complexity Low_complexity 1 23 0 241 266 53 43 chrX 72231857 72231951 -90367979 - MER41E LTR ERV1 -60 452 358 * 917 218 36 75 chrX 72231930 72232237 -90367693 - LTR43 LTR ERV1 -132 470 176 416 277 8 8 chrX 72232436 72232566 -90367364 - LTR43-int LTR ERV1 -1 4797 4668 741 166 49 25 chrX 72232861 72233024 -90366906 - LTR43-int LTR ERV1 -1597 3201 3035 347 42 28 42 chrX 72233122 72233194 -90366736 + (TTTTTG)n Simple_repeat Simple_repeat 2 72 0 2543 222 24 32 chrX 72233330 72233948 -90365982 - LTR43-int LTR ERV1 -1784 3014 2402 270 377 0 0 chrX 72234141 72234247 -90365683 - LTR43-int LTR ERV1 -2503 2295 2190 2380 117 11 3 chrX 72234247 72234599 -90365331 - THE1A LTR MaLR 0 355 1 4865 95 41 0 chrX 72234604 72235288 -90364642 - THE1A-int LTR MaLR -6 1574 863 396 123 4 0 chrX 72235288 72235349 -90364581 - THE1A LTR MaLR -300 55 2 945 240 104 10 chrX 72235352 72235640 -90364290 - LTR43-int LTR ERV1 -2603 2195 1881 2043 133 54 20 chrX 72236181 72236533 -90363397 + THE1B LTR MaLR 1 364 0 11222 115 6 0 chrX 72236533 72238104 -90361826 + THE1B-int LTR MaLR 1 1580 0 2098 113 53 31 chrX 72238105 72238460 -90361470 + THE1B LTR MaLR 2 364 0 258 190 76 51 chrX 72239125 72239204 -90360726 - MER41E LTR ERV1 -76 436 356 * 1268 203 48 14 chrX 72239171 72239466 -90360464 - LTR43 LTR ERV1 -122 480 176 310 329 0 7 chrX 72239805 72239954 -90359976 - L1ME LINE L1 -340 5891 5744 939 208 5 31 chrX 72239981 72240130 -90359800 + MER5A DNA MER1_type 1 145 -44 2474 123 8 3 chrX 72240130 72240503 -90359427 + THE1C LTR MaLR 1 375 0 939 208 5 31 chrX 72240503 72240545 -90359385 + MER5A DNA MER1_type 145 187 -2 232 273 106 62 chrX 72240571 72240798 -90359132 - L1ME LINE L1 -552 5701 5465 798 173 15 8 chrX 72240841 72240974 -90358956 - AluJb SINE Alu -9 303 170 494 306 40 18 chrX 72241012 72241408 -90358522 - L1ME LINE L1 -799 5416 5012 301 321 112 35 chrX 72241719 72242059 -90357871 - L1ME LINE L1 -4579 1817 1452 2057 231 42 78 chrX 72242060 72242880 -90357050 - L1MD2 LINE L1 -15 6227 5438 691 266 65 33 chrX 72242960 72243359 -90356571 - L1MD2 LINE L1 -2522 3624 3213 * 12510 197 12 11 chrX 72243348 72247271 -90352659 - L1MA3 LINE L1 -1 6304 2380 30016 120 17 59 chrX 72247400 72249957 -90349973 - L1PA7 LINE L1 -325 5829 3165 2509 68 0 3 chrX 72249957 72250265 -90349665 - AluY SINE Alu -4 307 1 30016 120 17 59 chrX 72250265 72253798 -90346132 - L1PA7 LINE L1 -2989 3165 12 25 0 0 0 chrX 72254485 72254510 -90345420 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chrX 72254803 72254840 -90345090 + AT_rich Low_complexity Low_complexity 1 37 0 283 335 33 26 chrX 72255278 72255430 -90344500 - MIR SINE MIR -61 201 49 2712 25 0 0 chrX 72255561 72255879 -90344051 + L1PA2 LINE L1 5838 6155 0 22 0 0 0 chrX 72255879 72255901 -90344029 + AT_rich Low_complexity Low_complexity 1 22 0 366 321 106 46 chrX 72255901 72256203 -90343727 - MLT1J2 LTR MaLR -64 386 67 577 303 87 5 chrX 72256246 72256454 -90343476 - MIR SINE MIR -1 261 37 300 231 0 0 chrX 72256988 72257053 -90342877 - L1MC4 LINE L1 -1341 6701 6637 23 33 0 0 chrX 72257243 72257273 -90342657 + AT_rich Low_complexity Low_complexity 1 30 0 1164 203 25 110 chrX 72257277 72257676 -90342254 + MLT1A1 LTR MaLR 1 365 0 250 372 124 0 chrX 72257717 72257830 -90342100 - MIR SINE MIR -57 151 25 5120 159 30 34 chrX 72257843 72258995 -90340935 + L1MA4A LINE L1 5149 6298 -5 22 56 0 0 chrX 72259313 72259349 -90340581 + AT_rich Low_complexity Low_complexity 1 36 0 684 307 22 35 chrX 72259908 72260139 -90339791 - MIR SINE MIR -14 248 21 720 279 21 47 chrX 72261079 72261312 -90338618 - MIR SINE MIR -34 228 2 21 0 0 0 chrX 72261383 72261404 -90338526 + AT_rich Low_complexity Low_complexity 1 21 0 1075 16 0 0 chrX 72261404 72261529 -90338401 - L1PA2 LINE L1 0 6155 6031 21 0 0 0 chrX 72262133 72262154 -90337776 + AT_rich Low_complexity Low_complexity 1 21 0 594 197 68 20 chrX 72263103 72263250 -90336680 - MIR SINE MIR -21 241 88 13235 160 33 16 chrX 72263264 72263378 -90336552 - Tigger1 DNA MER2_type -4 2414 2303 1636 101 0 4 chrX 72263378 72263605 -90336325 + AluSg/x SINE Alu 87 312 0 13235 160 33 16 chrX 72263605 72263826 -90336104 - Tigger1 DNA MER2_type -115 2303 2087 5740 97 39 1 chrX 72263826 72265555 -90334375 + L1PA13 LINE L1 4387 6161 -2 13235 160 33 16 chrX 72265555 72267592 -90332338 - Tigger1 DNA MER2_type -331 2087 2 208 342 25 25 chrX 72267593 72267672 -90332258 - MIR SINE MIR -183 79 1 326 307 64 69 chrX 72267709 72267911 -90332019 + L2 LINE L2 2878 3078 -194 213 39 0 0 chrX 72268019 72268045 -90331885 + (TC)n Simple_repeat Simple_repeat 2 27 0 533 234 70 0 chrX 72268077 72268205 -90331725 + L2 LINE L2 3177 3313 0 1433 171 134 44 chrX 72268697 72268858 -90331072 + THE1C LTR MaLR 1 146 -229 2358 86 3 0 chrX 72268858 72269161 -90330769 + AluY SINE Alu 1 304 -7 1433 171 134 44 chrX 72269161 72269343 -90330587 + THE1C LTR MaLR 146 375 0 8172 148 72 26 chrX 72269343 72270854 -90329076 + THE1C-int LTR MaLR 1 1580 0 1986 165 53 6 chrX 72270854 72271212 -90328718 + THE1C LTR MaLR 1 375 0 26 50 0 0 chrX 72271353 72271393 -90328537 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chrX 72272217 72272245 -90327685 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chrX 72272699 72272745 -90327185 + (TA)n Simple_repeat Simple_repeat 2 47 0 2981 143 99 11 chrX 72273049 72273596 -90326334 + LTR59 LTR ERV1 1 595 -2 7263 32 0 0 chrX 72273756 72275052 -90324878 - L1PA3 LINE L1 0 6155 4838 365 241 66 58 chrX 72275085 72275222 -90324708 + LTR49-int LTR ERV1 299 436 -6162 316 101 60 18 chrX 72275443 72275514 -90324416 + MER4D LTR ERV1 184 348 -524 850 149 0 8 chrX 72275538 72275672 -90324258 + LTR29 LTR ERV1 490 622 0 1460 178 23 20 chrX 72275673 72276399 -90323531 + LTR49-int LTR ERV1 53 1499 -4447 760 190 40 118 chrX 72276396 72276901 -90323029 + LTR49-int LTR ERV1 732 1906 -2974 * 513 187 0 0 chrX 72277021 72277112 -90322818 + LTR49-int LTR ERV1 1381 1471 -4860 3926 180 22 3 chrX 72277112 72277805 -90322125 + MER50 LTR ERV1 1 706 -28 1754 154 39 0 chrX 72277811 72278097 -90321833 + MER4B-int LTR ERV1 1 297 -6908 13230 181 60 35 chrX 72278118 72280705 -90319225 + MER4B-int LTR ERV1 833 3734 -1146 827 361 43 33 chrX 72280975 72282405 -90317525 + MER50-int LTR ERV1 2885 4014 -1032 * 4499 133 3 0 chrX 72282403 72283035 -90316895 + MER50-int LTR ERV1 6564 7197 -8 4027 171 14 15 chrX 72283035 72283747 -90316183 + MER50 LTR ERV1 1 711 -23 1794 224 35 60 chrX 72283749 72284446 -90315484 + MER4B-int LTR ERV1 1856 2288 -4043 445 246 0 7 chrX 72284436 72284569 -90315361 + MER4B-int LTR ERV1 866 2725 -3221 * 303 277 154 8 chrX 72284576 72284706 -90315224 + MER34C LTR ERV1 169 317 -268 1397 184 59 74 chrX 72284708 72285309 -90314621 + MER4B-int LTR ERV1 1199 3624 -2707 1176 188 7 19 chrX 72285280 72285551 -90314379 + MER4B-int LTR ERV1 2945 3212 -3546 * 25 0 0 0 chrX 72286000 72286025 -90313905 + AT_rich Low_complexity Low_complexity 1 25 0 4373 189 35 27 chrX 72286220 72287168 -90312762 + MER4B-int LTR ERV1 3198 4152 -2606 5749 246 21 28 chrX 72287178 72288579 -90311351 + L1M1 LINE L1 29 1419 -6146 13323 206 18 9 chrX 72288596 72292503 -90307427 + L1M1 LINE L1 3207 7150 -573 15264 106 15 1 chrX 72292505 72294624 -90305306 + HERVL-B3 LTR ERVL 3505 5654 0 1831 223 91 45 chrX 72294624 72295154 -90304776 + MLT2B3 LTR ERVL 1 554 0 829 256 18 14 chrX 72295237 72295460 -90304470 - L1M4b LINE L1 -6634 225 2 636 224 48 7 chrX 72295505 72295652 -90304278 - L2 LINE L2 -1 3312 3160 240 268 110 79 chrX 72295716 72295843 -90304087 - MIR SINE MIR -21 241 111 252 350 62 10 chrX 72295845 72295942 -90303988 + L2 LINE L2 3207 3308 -5 1393 244 78 53 chrX 72295960 72296447 -90303483 + MLT1D LTR MaLR 1 499 -6 1344 224 0 4 chrX 72298458 72298703 -90301227 - AluJo SINE Alu -44 268 25 446 239 109 57 chrX 72298729 72299112 -90300818 - L1MEc LINE L1 -3884 2762 2353 7830 16 0 0 chrX 72299140 72300072 -90299858 - L1PA3 LINE L1 -9 6146 5215 7937 25 0 0 chrX 72300072 72301020 -90298910 + L1PA3 LINE L1 4258 5205 -941 604 246 45 5 chrX 72301280 72301479 -90298451 - L1MEc LINE L1 -4923 1723 1517 3544 173 84 0 chrX 72301488 72302200 -90297730 - L1PA16 LINE L1 -9 6157 5386 3321 225 36 33 chrX 72302204 72303217 -90296713 - L1MEc LINE L1 -5011 1531 515 523 194 47 0 chrX 72303285 72303414 -90296516 - L1MEc LINE L1 -6405 137 3 18150 201 36 13 chrX 72303539 72305843 -90294087 - L1 LINE L1 -1411 6154 3903 3337 112 16 10 chrX 72305843 72306351 -90293579 - MER9 LTR ERVK 0 511 1 18150 201 36 13 chrX 72306351 72307204 -90292726 - L1 LINE L1 -3662 3903 3071 2010 140 0 3 chrX 72307204 72307496 -90292434 + AluSg SINE Alu 1 291 -19 18150 201 36 13 chrX 72307496 72310070 -90289860 - L1 LINE L1 -4494 3071 279 2091 155 37 11 chrX 72310070 72310425 -90289505 - THE1B LTR MaLR 0 364 1 18150 201 36 13 chrX 72310425 72310700 -90289230 - L1 LINE L1 -7286 279 12 441 241 9 9 chrX 72310709 72310825 -90289105 - L1M4 LINE L1 -1147 5235 5120 776 229 80 90 chrX 72310832 72311049 -90288881 - L1M4 LINE L1 -4987 1397 1179 2423 99 0 0 chrX 72311049 72311351 -90288579 + AluSg SINE Alu 1 302 -8 776 229 80 90 chrX 72311351 72311732 -90288198 - L1M4 LINE L1 -5205 1179 805 469 266 57 64 chrX 72312488 72312635 -90287295 - L1M3 LINE L1 -573 5607 5461 1755 181 3 7 chrX 72312635 72312934 -90286996 + AluJb SINE Alu 6 303 -9 469 266 57 64 chrX 72312934 72313083 -90286847 - L1M3 LINE L1 -719 5461 5313 * 7445 226 27 23 chrX 72313076 72316138 -90283792 - L1PA15 LINE L1 0 6165 3103 * 9545 138 61 10 chrX 72316128 72317198 -90282732 - L1PBa LINE L1 -3853 3009 1995 2368 94 0 0 chrX 72317198 72317505 -90282425 - AluSc SINE Alu -2 307 1 9545 138 61 10 chrX 72317505 72319154 -90280776 - L1PBa LINE L1 -4867 1995 5 5012 227 24 19 chrX 72319168 72319942 -90279988 - L1 LINE L1 -2572 4993 4207 2248 104 7 13 chrX 72319942 72320251 -90279679 - AluSg SINE Alu -1 309 3 5012 227 24 19 chrX 72320251 72320875 -90279055 - L1 LINE L1 -3358 4207 3588 3777 137 65 25 chrX 72320877 72321621 -90278309 - L1 LINE L1 -4077 3488 2716 * 42823 33 21 1 chrX 72321615 72327684 -90272246 - L1PA2 LINE L1 0 6155 3 1104 141 16 0 chrX 72327701 72327892 -90272038 - L1 LINE L1 -4832 2733 2540 * 7753 230 22 26 chrX 72327880 72328864 -90271066 - L1P4 LINE L1 -668 6148 5161 1959 136 53 14 chrX 72328864 72329225 -90270705 - THE1C LTR MaLR 0 375 1 7753 230 22 26 chrX 72329225 72330758 -90269172 - L1P4 LINE L1 -1655 5161 3641 4004 285 27 26 chrX 72330786 72332317 -90267613 - L1P4 LINE L1 -3379 3418 1890 2250 99 10 0 chrX 72332317 72332621 -90267309 - AluSp SINE Alu -6 307 1 4004 285 27 26 chrX 72332621 72333297 -90266633 - L1P4 LINE L1 -4907 1890 1216 1806 137 0 14 chrX 72333297 72333611 -90266319 - AluSx SINE Alu 0 318 9 4004 285 27 26 chrX 72333611 72334367 -90265563 - L1P4 LINE L1 -5581 1216 1 26 0 0 0 chrX 72335293 72335319 -90264611 + AT_rich Low_complexity Low_complexity 1 26 0 302 278 152 13 chrX 72335324 72335475 -90264455 - MIR SINE MIR -73 189 18 410 171 0 0 chrX 72335489 72335559 -90264371 - MER8 DNA MER2_type 0 239 170 * 515 173 87 0 chrX 72335556 72335660 -90264270 + Tigger2 DNA MER2_type 2280 2392 -326 837 298 22 35 chrX 72335681 72335993 -90263937 - MER87 LTR ERV1 -23 518 211 1780 190 15 3 chrX 72336162 72336488 -90263442 + Tigger2 DNA MER2_type 2389 2718 0 963 302 141 24 chrX 72336590 72337044 -90262886 - MLT1J LTR MaLR -4 507 1 1636 172 0 0 chrX 72337255 72337517 -90262413 + MER54A LTR ERVL 1 262 -639 332 323 35 55 chrX 72338950 72339151 -90260779 + MIR SINE MIR 20 216 -46 273 364 0 0 chrX 72340013 72340112 -90259818 + L2 LINE L2 3204 3302 -11 519 286 56 6 chrX 72340485 72340663 -90259267 + MIR SINE MIR 5 191 -71 832 296 53 72 chrX 72342275 72342948 -90256982 + L2 LINE L2 2629 3308 -5 623 229 0 0 chrX 72343103 72343225 -90256705 + FLAM_C SINE Alu 4 125 -18 23 54 0 0 chrX 72343826 72343863 -90256067 + AT_rich Low_complexity Low_complexity 1 37 0 46 62 0 0 chrX 72343955 72344036 -90255894 + AT_rich Low_complexity Low_complexity 1 81 0 7741 40 0 1 chrX 72344036 72345751 -90254179 - L1PA3 LINE L1 -3 6152 4438 6115 97 4 0 chrX 72346007 72347034 -90252896 - L1PA11 LINE L1 -4 6170 5137 1853 151 7 3 chrX 72347238 72347542 -90252388 - AluSx SINE Alu -7 305 1 268 271 62 11 chrX 72348098 72348266 -90251664 + L1M4b LINE L1 22 500 -6355 4784 157 6 7 chrX 72348296 72349107 -90250823 - L1PB3 LINE L1 -2 6152 5343 874 323 36 18 chrX 72349109 72349499 -90250431 - L1MEc LINE L1 -5975 421 25 502 310 78 16 chrX 72349867 72350109 -90249821 - L1MEd LINE L1 -5859 260 4 485 333 147 15 chrX 72350397 72350860 -90249070 + L2 LINE L2 2012 2535 -779 22 56 0 0 chrX 72350920 72350956 -90248974 + AT_rich Low_complexity Low_complexity 1 36 0 713 322 26 26 chrX 72351359 72351603 -90248327 - MLT1I LTR MaLR -2 407 161 1684 159 162 26 chrX 72351603 72351980 -90247950 + MSTA LTR MaLR 1 428 0 713 322 26 26 chrX 72351980 72352039 -90247891 - MLT1I LTR MaLR -247 162 104 291 223 23 123 chrX 72352706 72352836 -90247094 + LTR4 LTR ERV1 1 117 -479 706 226 31 59 chrX 72353090 72353377 -90246553 + LTR4 LTR ERV1 318 596 0 1695 229 95 23 chrX 72353850 72354322 -90245608 + L1MD2 LINE L1 5852 6357 -2 232 233 0 33 chrX 72354444 72354504 -90245426 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 318 111 0 19 chrX 72355098 72355152 -90244778 - MSTB1 LTR MaLR 0 432 380 13445 185 32 34 chrX 72355162 72358962 -90240968 - L1MA1 LINE L1 -1 7720 3914 1779 177 0 3 chrX 72358962 72359256 -90240674 - AluSx SINE Alu -19 293 1 13445 185 32 34 chrX 72359256 72362511 -90237419 - L1MA1 LINE L1 -3807 3914 13 1558 238 25 17 chrX 72362507 72362986 -90236944 - L1 LINE L1 -3011 4554 4072 * 17062 187 34 16 chrX 72362968 72363434 -90236496 - L1 LINE L1 -4105 3460 3004 3270 26 0 0 chrX 72363434 72363820 -90236110 - L1PA2 LINE L1 0 6155 5770 17062 187 34 16 chrX 72363820 72366740 -90233190 - L1 LINE L1 -4561 3004 15 5315 259 101 11 chrX 72366738 72368865 -90231065 - L1M4 LINE L1 -814 5332 3015 * 16004 198 22 14 chrX 72369046 72373989 -90225941 - L1PA14 LINE L1 0 7599 2609 1590 198 7 13 chrX 72373989 72374292 -90225638 - AluSx SINE Alu -11 301 1 16004 198 22 14 chrX 72374292 72374366 -90225564 - L1PA14 LINE L1 -4990 2609 2537 530 117 250 23 chrX 72374410 72374538 -90225392 - MER4C LTR ERV1 -18 447 291 239 109 11 185 chrX 72374588 72374680 -90225250 - MER4A LTR ERV1 -301 363 288 * 1518 157 49 44 chrX 72374664 72375008 -90224922 - MER4A LTR ERV1 -318 346 1 388 242 0 118 chrX 72375023 72375176 -90224754 - MER4A-int LTR ERV1 -14 6584 6450 243 200 20 0 chrX 72375231 72375281 -90224649 + GA-rich Low_complexity Low_complexity 2 52 0 1899 324 35 26 chrX 72375630 72376661 -90223269 - LTR17-int LTR ERV1 -450 6672 5633 773 319 48 55 chrX 72376976 72377685 -90222245 - LTR17-int LTR ERV1 -1767 2880 2177 393 327 86 57 chrX 72378267 72378790 -90221140 - LTR17-int LTR ERV1 -2890 3911 3374 266 367 32 25 chrX 72379465 72379623 -90220307 - LTR17-int LTR ERV1 -4094 2707 2549 251 254 0 0 chrX 72379603 72379666 -90220264 - LTR17-int LTR ERV1 -1788 3166 3104 * 22 35 0 0 chrX 72381031 72381060 -90218870 + AT_rich Low_complexity Low_complexity 1 29 0 282 279 39 88 chrX 72382355 72382559 -90217371 - LTR17-int LTR ERV1 -6182 576 383 816 216 173 38 chrX 72382594 72382629 -90217301 - LTR17-int LTR ERV1 -5926 672 643 432 0 0 0 chrX 72382629 72382677 -90217253 + (CA)n Simple_repeat Simple_repeat 2 49 0 816 216 173 38 chrX 72382677 72382946 -90216984 - LTR17-int LTR ERV1 -5955 643 412 6349 58 1 0 chrX 72382946 72383725 -90216205 - LTR17 LTR ERV1 0 780 1 816 216 173 38 chrX 72383725 72383940 -90215990 - LTR17-int LTR ERV1 -6186 412 1 422 159 323 25 chrX 72383963 72384164 -90215766 - MER4C LTR ERV1 -20 445 185 1439 158 49 52 chrX 72384222 72384569 -90215361 - MER4A LTR ERV1 -318 346 1 15003 176 6 7 chrX 72384569 72387032 -90212898 - L1PA12 LINE L1 -5060 2521 62 965 190 7 120 chrX 72387037 72387321 -90212609 - LTR9 LTR ERV1 -360 252 1 8195 233 31 13 chrX 72387321 72390718 -90209212 + L1M2 LINE L1 1034 4490 -2358 24 67 0 0 chrX 72390960 72391005 -90208925 + AT_rich Low_complexity Low_complexity 1 45 0 3542 147 38 16 chrX 72391192 72391881 -90208049 - L1MA2 LINE L1 -1 7722 7019 11051 204 31 23 chrX 72391881 72394411 -90205519 - L1MA2 LINE L1 -1172 6393 3885 261 0 0 0 chrX 72394411 72394440 -90205490 + (TA)n Simple_repeat Simple_repeat 1 29 0 11051 204 31 23 chrX 72394440 72395178 -90204752 - L1MA2 LINE L1 -3680 3885 3088 290 96 0 19 chrX 72395178 72395230 -90204700 + (TA)n Simple_repeat Simple_repeat 2 52 0 11051 204 31 23 chrX 72395230 72395654 -90204276 - L1MA2 LINE L1 -4477 3088 2669 8544 51 5 0 chrX 72395654 72397498 -90202432 - L1PA5 LINE L1 -2 6152 4294 6952 55 3 0 chrX 72397498 72398374 -90201556 + L1PA5 LINE L1 5272 6152 -2 12271 112 11 3 chrX 72398375 72401014 -90198916 + L1PA7 LINE L1 3499 6153 -1 9687 206 29 19 chrX 72401033 72402810 -90197120 - L1MA2 LINE L1 -5230 2335 535 2512 57 3 0 chrX 72402810 72403109 -90196821 + AluY SINE Alu 1 300 -11 9687 206 29 19 chrX 72403109 72403241 -90196689 - L1MA2 LINE L1 -7030 535 406 1660 194 17 57 chrX 72403244 72403651 -90196279 + L1MA4A LINE L1 5400 5790 -513 2160 157 32 12 chrX 72403653 72404060 -90195870 + L1MA4A LINE L1 5876 6290 -13 1331 251 49 3 chrX 72404079 72404426 -90195504 + MLT1A1 LTR MaLR 1 363 -2 2604 123 25 27 chrX 72404429 72404836 -90195094 + MLT2A2 LTR ERVL 1 406 -47 240 35 0 0 chrX 72404850 72404879 -90195051 + (TA)n Simple_repeat Simple_repeat 1 29 0 344 156 0 78 chrX 72404955 72404991 -90194939 + MLT2A2 LTR ERVL 383 411 -42 351 0 0 0 chrX 72404991 72405030 -90194900 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 344 156 0 78 chrX 72405030 72405070 -90194860 + MLT2A2 LTR ERVL 411 453 0 33336 94 14 3 chrX 72405070 72409562 -90190368 + HERVL-A2 LTR ERVL 1 4542 -1112 10753 239 60 35 chrX 72409674 72413602 -90186328 - L1 LINE L1 -3831 3734 18 2246 218 20 9 chrX 72413669 72414206 -90185724 - L1MB8 LINE L1 -12 6166 5624 6077 168 40 39 chrX 72414208 72414691 -90185239 + Ricksha_b DNA DNA 8 489 -2365 2089 120 49 25 chrX 72414691 72415057 -90184873 + THE1C LTR MaLR 1 375 0 6077 168 40 39 chrX 72415057 72415815 -90184115 + Ricksha_b DNA DNA 489 1250 -4 1326 224 42 0 chrX 72415815 72416128 -90183802 - L1MB8 LINE L1 -541 5643 5318 5129 199 25 14 chrX 72416144 72418073 -90181857 - L1PA16 LINE L1 -9 6335 4403 3238 236 37 27 chrX 72418173 72419842 -90180088 - L1MC2 LINE L1 -187 6157 4474 29 47 0 0 chrX 72419883 72419926 -90180004 + AT_rich Low_complexity Low_complexity 1 43 0 991 202 45 8 chrX 72419946 72420189 -90179741 - L1MA9 LINE L1 -40 6272 6021 2310 94 0 12 chrX 72420377 72420706 -90179224 - L1PA8 LINE L1 -3 6169 5845 312 273 0 100 chrX 72420706 72420928 -90179002 - L1MC2 LINE L1 -1775 4371 4171 308 247 34 22 chrX 72420958 72421047 -90178883 - L1MC4 LINE L1 -1339 6703 6614 * 309 213 0 50 chrX 72420968 72421048 -90178882 + L1MC4 LINE L1 6615 6690 -1352 755 254 71 14 chrX 72421048 72421414 -90178516 + L1M4 LINE L1 3000 3386 -2760 * 6589 56 2 0 chrX 72421412 72422245 -90177685 - L1PA6 LINE L1 -3 6151 5317 11559 29 16 1 chrX 72422345 72423751 -90176179 - L1PA6 LINE L1 -1337 4809 3383 2482 171 79 52 chrX 72423751 72424503 -90175427 - MER61C-int LTR ERV1 -4353 864 20 2068 182 34 14 chrX 72424529 72424942 -90174988 - MER61C LTR ERV1 0 434 14 278 316 121 82 chrX 72424993 72425249 -90174681 - L1M2 LINE L1 -5788 1061 796 5974 236 57 43 chrX 72425370 72425919 -90174011 - L1 LINE L1 -865 5867 5327 1366 226 3 30 chrX 72425919 72426074 -90173856 - AluJo SINE Alu -24 288 143 2818 3 0 3 chrX 72426074 72426381 -90173549 - AluYa5 SINE Alu -5 306 1 1366 226 3 30 chrX 72426381 72426521 -90173409 - AluJo SINE Alu -169 143 1 5974 236 57 43 chrX 72426521 72428023 -90171907 - L1 LINE L1 -1405 5327 3789 1579 206 53 0 chrX 72428052 72428412 -90171518 - L1MA4 LINE L1 -4 6296 5918 732 231 82 18 chrX 72428424 72428705 -90171225 - L1 LINE L1 -2975 3757 3459 * 1747 231 41 56 chrX 72428700 72429168 -90170762 - L1 LINE L1 -4997 1656 1196 236 325 136 31 chrX 72429274 72429502 -90170428 - L1 LINE L1 -5668 985 734 6375 142 29 3 chrX 72429529 72430795 -90169135 - L1MA1 LINE L1 -1 7720 6421 228 67 0 0 chrX 72430795 72430825 -90169105 + (TA)n Simple_repeat Simple_repeat 1 30 0 37935 77 17 11 chrX 72430825 72432112 -90167818 - L1PA4 LINE L1 -19 6136 4859 2299 83 0 35 chrX 72432112 72432425 -90167505 + AluY SINE Alu 1 302 -9 37935 77 17 11 chrX 72432425 72432690 -90167240 - L1PA4 LINE L1 -1296 4859 4597 180 0 0 0 chrX 72432690 72432710 -90167220 + (AATTG)n Simple_repeat Simple_repeat 3 22 0 37935 77 17 11 chrX 72432710 72437242 -90162688 - L1PA4 LINE L1 -1558 4597 11 10643 184 23 41 chrX 72437255 72441713 -90158217 - L1MA1 LINE L1 -1133 6432 2057 2939 150 30 33 chrX 72441713 72441846 -90158084 + L1PA13 LINE L1 5586 5718 -445 1951 146 5 91 chrX 72441846 72442244 -90157686 + THE1B LTR MaLR 1 364 0 2939 150 30 33 chrX 72442244 72442683 -90157247 + L1PA13 LINE L1 5718 6156 -7 1760 179 3 3 chrX 72442694 72443051 -90156879 + L1PA16 LINE L1 2547 2903 -3946 25 31 0 0 chrX 72443081 72443113 -90156817 + AT_rich Low_complexity Low_complexity 1 32 0 23 86 0 0 chrX 72443134 72443192 -90156738 + AT_rich Low_complexity Low_complexity 1 58 0 1143 117 62 0 chrX 72443466 72443628 -90156302 - AluSg/x SINE Alu -12 300 129 393 82 0 0 chrX 72443641 72443702 -90156228 - L1PA3 LINE L1 0 6155 6095 28663 127 12 84 chrX 72443702 72449380 -90150550 - L1P LINE L1 -865 5281 12 8364 232 60 10 chrX 72449402 72453039 -90146891 + L1PA16 LINE L1 3062 6860 -9 23 33 0 0 chrX 72453039 72453069 -90146861 + AT_rich Low_complexity Low_complexity 1 30 0 4955 261 26 16 chrX 72453088 72453665 -90146265 + L1 LINE L1 2560 3130 -3016 4727 93 8 2 chrX 72453665 72454308 -90145622 + L1PA10 LINE L1 5509 6155 -13 4955 261 26 16 chrX 72454308 72455481 -90144449 + L1 LINE L1 3130 4328 -1818 216 0 0 0 chrX 72455492 72455516 -90144414 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1152 225 52 16 chrX 72455518 72455904 -90144026 + L1 LINE L1 3100 3499 -2647 3034 278 100 13 chrX 72455914 72458301 -90141629 - L1 LINE L1 -3129 4436 1897 724 295 71 21 chrX 72458400 72458808 -90141122 - L1 LINE L1 -6589 976 539 1943 151 3 6 chrX 72458811 72459122 -90140808 - MER4A LTR ERV1 0 664 355 2172 108 13 54 chrX 72459163 72459535 -90140395 - MER4A LTR ERV1 -307 357 1 3006 170 26 52 chrX 72459540 72460283 -90139647 - MER4A-int LTR ERV1 -1 6597 5875 12919 231 30 25 chrX 72460312 72463044 -90136886 - L1PB3 LINE L1 -2 6855 4138 2850 88 3 0 chrX 72463044 72463432 -90136498 - L1PA8 LINE L1 -13 6159 5771 12919 231 30 25 chrX 72463432 72468417 -90131513 - L1PB3 LINE L1 -2719 4138 11 396 0 0 0 chrX 72468419 72468463 -90131467 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 354 333 0 0 chrX 72468520 72468643 -90131287 + L1PBa LINE L1 294 416 -6447 12710 164 69 32 chrX 72468655 72471650 -90128280 - MER4A-int LTR ERV1 -756 5842 2736 1674 226 68 36 chrX 72471473 72472034 -90127896 - LTR57-int LTR ERVL -3773 1570 992 * 9059 158 115 58 chrX 72471745 72473115 -90126815 - MER4A-int LTR ERV1 -4113 2485 1194 2010 161 0 0 chrX 72473115 72473413 -90126517 + AluSx SINE Alu 1 298 -14 9059 158 115 58 chrX 72473413 72474008 -90125922 - MER4A-int LTR ERV1 -5404 1194 634 5242 60 64 119 chrX 72474008 72474881 -90125049 - LTR12 LTR ERV1 0 826 2 9059 158 115 58 chrX 72474881 72475261 -90124669 - MER4A-int LTR ERV1 -5964 634 6 1720 149 44 20 chrX 72475269 72475511 -90124419 - MER4A LTR ERV1 0 664 412 2294 27 0 0 chrX 72475511 72475769 -90124161 + AluY SINE Alu 39 296 -15 1720 149 44 20 chrX 72475769 72475821 -90124109 - MER4A LTR ERV1 -252 412 363 6859 63 15 0 chrX 72475924 72476925 -90123005 - L1PA7 LINE L1 -5 6149 5141 1864 61 0 0 chrX 72476928 72477173 -90122757 + L1PA7 LINE L1 4893 5137 -1009 2036 128 0 60 chrX 72477173 72477540 -90122390 - MER4A LTR ERV1 -319 345 1 281 344 25 12 chrX 72477549 72477712 -90122218 - L1M1 LINE L1 -6594 512 348 1605 210 49 51 chrX 72477818 72478016 -90121914 - L1M1 LINE L1 -6526 504 307 4321 84 62 14 chrX 72478016 72478646 -90121284 + PABL_A LTR ERV1 1 660 0 1605 210 49 51 chrX 72478646 72478984 -90120946 - L1M1 LINE L1 -6723 307 10 474 313 30 12 chrX 72479055 72479221 -90120709 + MIR SINE MIR 94 262 0 269 261 23 0 chrX 72479236 72479324 -90120606 + (TAG)n Simple_repeat Simple_repeat 1 90 0 22 35 0 0 chrX 72479500 72479529 -90120401 + AT_rich Low_complexity Low_complexity 1 29 0 287 148 25 25 chrX 72479851 72479932 -90119998 + (TA)n Simple_repeat Simple_repeat 2 82 0 578 152 0 10 chrX 72479943 72480042 -90119888 + MER4A LTR ERV1 1 98 -566 1782 106 160 85 chrX 72480042 72480418 -90119512 + MER4A LTR ERV1 261 664 0 309 169 0 48 chrX 72480418 72480542 -90119388 + (TA)n Simple_repeat Simple_repeat 2 119 0 477 0 0 0 chrX 72480594 72480647 -90119283 + (CA)n Simple_repeat Simple_repeat 2 54 0 349 292 33 0 chrX 72481930 72482050 -90117880 + LTR67 LTR ERVL 434 557 0 559 341 22 13 chrX 72483052 72483281 -90116649 + MIR SINE MIR 23 253 -9 336 230 260 0 chrX 72483306 72483406 -90116524 - L2 LINE L2 -4 3309 3184 3091 152 2 11 chrX 72483558 72484078 -90115852 + L1PA15 LINE L1 5651 6165 0 901 329 178 9 chrX 72484164 72484924 -90115006 - L2 LINE L2 -776 2538 1651 4991 131 41 5 chrX 72485149 72485952 -90113978 - L1PA14 LINE L1 -2 6159 5328 8959 166 23 5 chrX 72486309 72488939 -90110991 + L1MA3 LINE L1 3523 6204 -101 321 296 0 0 chrX 72489272 72489343 -90110587 + L2 LINE L2 3198 3268 -4 204 40 0 0 chrX 72490213 72490238 -90109692 + (CCA)n Simple_repeat Simple_repeat 1 25 0 662 304 26 18 chrX 72490907 72491134 -90108796 + MIR SINE MIR 1 229 -33 272 286 209 0 chrX 72491541 72491632 -90108298 + L2 LINE L2 3150 3259 -13 322 269 37 67 chrX 72492117 72492251 -90107679 + MIR SINE MIR 70 199 -63 411 221 3 0 chrX 72492562 72492645 -90107285 - MLT1E1 LTR MaLR -458 84 1 381 243 177 30 chrX 72492645 72492945 -90106985 + L1ME2 LINE L1 2381 2724 -3422 9352 195 28 17 chrX 72492947 72493626 -90106304 - L1PA16 LINE L1 0 6166 5496 2268 76 0 3 chrX 72493626 72493916 -90106014 - AluY SINE Alu -12 299 11 9352 195 28 17 chrX 72493916 72495689 -90104241 - L1PA16 LINE L1 -670 5496 3676 207 0 0 0 chrX 72495689 72495712 -90104218 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9352 195 28 17 chrX 72495712 72496445 -90103485 - L1PA16 LINE L1 -2490 3676 2953 2438 272 69 44 chrX 72496447 72497659 -90102271 + L1ME2 LINE L1 2716 3897 -2249 2501 57 0 3 chrX 72497659 72497959 -90101971 + AluY SINE Alu 1 299 -12 2438 272 69 44 chrX 72497959 72498252 -90101678 + L1ME2 LINE L1 3897 4270 -1876 2033 134 0 13 chrX 72498252 72498558 -90101372 + AluSx SINE Alu 1 302 -10 2438 272 69 44 chrX 72498558 72498751 -90101179 + L1ME2 LINE L1 4270 4457 -1689 995 185 28 5 chrX 72498754 72498965 -90100965 + L1MA10 LINE L1 5743 5958 -210 1292 195 30 17 chrX 72498967 72499078 -90100852 + L1MA10 LINE L1 6032 6140 -194 2127 131 0 3 chrX 72499078 72499391 -90100539 - AluSx SINE Alu 0 312 1 1292 195 30 17 chrX 72499391 72499409 -90100521 + L1MA10 LINE L1 6140 6156 -178 207 0 0 0 chrX 72499409 72499432 -90100498 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1292 195 30 17 chrX 72499432 72499599 -90100331 + L1MA10 LINE L1 6156 6333 -1 1115 283 101 44 chrX 72499624 72500397 -90099533 + L1ME2 LINE L1 4489 5305 -841 * 2299 235 89 2 chrX 72500394 72501003 -90098927 - L1MA10 LINE L1 -2033 4113 3452 * 4414 209 74 17 chrX 72501002 72502513 -90097417 + L1MA10 LINE L1 4125 5549 -785 2158 112 0 3 chrX 72502513 72502807 -90097123 - AluSg SINE Alu -17 293 1 4414 209 74 17 chrX 72502807 72502820 -90097110 + L1MA10 LINE L1 5549 5560 -774 186 43 0 0 chrX 72502820 72502843 -90097087 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4414 209 74 17 chrX 72502843 72503045 -90096885 + L1MA10 LINE L1 5560 5749 -585 1852 188 70 34 chrX 72503045 72503282 -90096648 - MSTB1 LTR MaLR 0 432 172 1912 135 3 10 chrX 72503282 72503635 -90096295 + AluSg SINE Alu 1 310 0 1852 188 70 34 chrX 72503635 72503813 -90096117 - MSTB1 LTR MaLR -260 172 2 4414 209 74 17 chrX 72503813 72504175 -90095755 + L1MA10 LINE L1 5749 6334 0 966 285 33 5 chrX 72504241 72504609 -90095321 + L1ME2 LINE L1 5548 5925 -245 278 255 134 34 chrX 72504620 72504769 -90095161 + L1ME2 LINE L1 5976 6139 -25 25 31 0 0 chrX 72504770 72504802 -90095128 + AT_rich Low_complexity Low_complexity 1 32 0 2720 97 12 61 chrX 72505618 72506042 -90093888 + MLT2A2 LTR ERVL 1 403 -50 542 41 14 0 chrX 72506043 72506116 -90093814 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 4369 167 23 31 chrX 72506119 72507104 -90092826 - MER11C LTR ERVK -4 1067 2 426 20 0 0 chrX 72507104 72507155 -90092775 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 271 139 0 0 chrX 72507163 72507206 -90092724 + MLT2A2 LTR ERVL 411 453 0 3669 252 42 55 chrX 72507491 72508242 -90091688 + L1MB5 LINE L1 2180 2939 -3207 321 26 0 0 chrX 72508242 72508281 -90091649 + MLT2A2 LTR ERVL 37 75 -378 3669 252 42 55 chrX 72508281 72509096 -90090834 + L1MB5 LINE L1 2939 3763 -2383 1799 153 0 14 chrX 72509096 72509377 -90090553 + AluJo SINE Alu 11 287 -25 3669 252 42 55 chrX 72509377 72509464 -90090466 + L1MB5 LINE L1 3763 3850 -2296 3593 194 23 63 chrX 72509577 72510484 -90089446 + L1MB5 LINE L1 5291 6161 -13 481 284 47 0 chrX 72511988 72512136 -90087794 - MER63A DNA MER1_type 0 210 56 1937 174 88 8 chrX 72512383 72512665 -90087265 - MSTC LTR MaLR -4 424 101 183 114 0 0 chrX 72512665 72512700 -90087230 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 1937 174 88 8 chrX 72512700 72512803 -90087127 - MSTC LTR MaLR -327 101 8 751 37 2 0 chrX 72513045 72513142 -90086788 - L1PA5 LINE L1 -489 5677 5579 4088 39 0 0 chrX 72513143 72513631 -90086299 + L1PA5 LINE L1 5660 6147 -7 242 202 10 144 chrX 72514865 72514969 -90084961 - L2 LINE L2 0 3272 3183 609 304 76 7 chrX 72515996 72516324 -90083606 + L1ME LINE L1 5474 5822 -340 277 204 41 27 chrX 72516325 72516472 -90083458 + (TA)n Simple_repeat Simple_repeat 2 150 0 373 220 44 0 chrX 72516626 72516717 -90083213 - MER53 DNA DNA -94 95 1 22 35 0 0 chrX 72516835 72516864 -90083066 + AT_rich Low_complexity Low_complexity 1 29 0 2020 169 3 21 chrX 72517448 72517820 -90082110 + MER47A DNA MER2_type 2 366 0 2456 47 0 25 chrX 72519172 72519489 -90080441 + AluY SINE Alu 1 309 -2 292 175 0 18 chrX 72519513 72519570 -90080360 - L2 LINE L2 0 3313 3258 346 207 49 12 chrX 72521386 72521468 -90078462 - L1PA16 LINE L1 -3 6163 6079 2239 121 51 0 chrX 72521749 72522122 -90077808 - L1PA11 LINE L1 -1 6173 5782 1787 99 75 3 chrX 72522124 72522624 -90077306 - L1PA11 LINE L1 -619 5555 5031 * 8346 142 4 10 chrX 72522623 72523999 -90075931 - L1PA11 LINE L1 -1495 4651 3284 783 175 0 24 chrX 72523998 72524164 -90075766 - L1PA16 LINE L1 -81 6085 5924 * 1072 167 91 0 chrX 72524744 72524942 -90074988 - MER20 DNA MER1_type -3 216 1 16862 174 19 15 chrX 72524956 72527934 -90071996 - L1M1 LINE L1 -4457 3108 115 2028 127 6 13 chrX 72527934 72528248 -90071682 - AluSx SINE Alu 0 312 1 16862 174 19 15 chrX 72528248 72528352 -90071578 - L1M1 LINE L1 -7450 115 13 25 31 0 0 chrX 72529655 72529687 -90070243 + AT_rich Low_complexity Low_complexity 1 32 0 1656 176 3 44 chrX 72530623 72530942 -90068988 - AluJo SINE Alu -6 306 1 195 42 0 0 chrX 72531757 72531781 -90068149 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 256 326 138 29 chrX 72531788 72531926 -90068004 - L2 LINE L2 -4 3268 3116 222 338 0 52 chrX 72531965 72532042 -90067888 + L3b LINE CR1 1511 1583 0 3945 145 29 11 chrX 72532292 72532956 -90066974 - L1PA16 LINE L1 0 6166 5491 1244 221 20 37 chrX 72532959 72533257 -90066673 - AluJo SINE Alu -9 293 1 181 157 0 39 chrX 72534015 72534066 -90065864 + T-rich Low_complexity Low_complexity 2 50 0 2341 90 3 3 chrX 72534794 72535104 -90064826 - AluSg SINE Alu 0 310 1 257 51 26 0 chrX 72535370 72535409 -90064521 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 232 150 17 83 chrX 72535661 72535721 -90064209 - L2 LINE L2 -8 3264 3209 181 340 90 10 chrX 72535853 72535953 -90063977 - MIR3 SINE MIR -86 122 15 1973 108 0 0 chrX 72536052 72536332 -90063598 + AluSc SINE Alu 22 301 0 291 252 86 45 chrX 72536557 72536727 -90063203 + L1P4 LINE L1 5275 5450 -716 367 357 35 18 chrX 72536816 72537102 -90062828 + L1ME4a LINE L1 5592 5882 -239 358 355 20 7 chrX 72537205 72537357 -90062573 - MIR SINE MIR -59 203 50 42 0 0 0 chrX 72537849 72537891 -90062039 + AT_rich Low_complexity Low_complexity 1 42 0 3112 49 0 0 chrX 72538001 72538386 -90061544 - L1PA5 LINE L1 0 6154 5770 19342 36 2 0 chrX 72538404 72541549 -90058381 - L1PA4 LINE L1 -2 6153 3010 1470 39 6 0 chrX 72541549 72541728 -90058202 - L1PA5 LINE L1 -374 5780 5601 184 310 17 0 chrX 72542266 72542324 -90057606 - MIR3 SINE MIR -41 167 109 213 0 81 0 chrX 72543357 72543394 -90056536 + A-rich Low_complexity Low_complexity 4 43 0 354 277 164 23 chrX 72543569 72543746 -90056184 + MIR3 SINE MIR 4 205 -3 22 35 0 0 chrX 72543995 72544024 -90055906 + AT_rich Low_complexity Low_complexity 1 29 0 21156 192 24 35 chrX 72544848 72551380 -90048550 - L1PA11 LINE L1 -3 6486 10 2171 115 3 6 chrX 72552567 72552881 -90047049 + AluSp SINE Alu 1 313 0 883 222 25 12 chrX 72553062 72553304 -90046626 + L1MA5 LINE L1 6003 6251 -54 2128 94 28 0 chrX 72553423 72553711 -90046219 + AluSg SINE Alu 1 296 -14 2021 149 3 0 chrX 72553779 72554106 -90045824 - AluSq SINE Alu 0 328 1 720 251 150 13 chrX 72554177 72554404 -90045526 + MLT1L LTR MaLR 11 268 -347 389 323 29 29 chrX 72554820 72555029 -90044901 + MIR3 SINE MIR 2 208 -54 210 360 81 0 chrX 72555073 72555184 -90044746 + L2 LINE L2 3153 3272 0 229 231 0 121 chrX 72555291 72555382 -90044548 - L2 LINE L2 -8 3264 3185 265 323 49 9 chrX 72555420 72555646 -90044284 - L1M4 LINE L1 -2250 3896 3662 6241 92 15 7 chrX 72555858 72557227 -90042703 + L1PA11 LINE L1 4788 6169 -5 294 132 0 0 chrX 72557546 72557599 -90042331 + (GA)n Simple_repeat Simple_repeat 2 54 0 25 0 0 0 chrX 72558950 72558975 -90040955 + AT_rich Low_complexity Low_complexity 1 25 0 596 271 179 9 chrX 72560083 72560301 -90039629 + MIR SINE MIR 6 260 -2 514 257 18 0 chrX 72560750 72560863 -90039067 + L2 LINE L2 3158 3272 0 235 350 0 0 chrX 72561822 72561882 -90038048 - MIR SINE MIR -71 137 78 306 0 0 0 chrX 72562916 72562950 -90036980 + (CA)n Simple_repeat Simple_repeat 2 35 0 225 237 34 17 chrX 72565973 72566032 -90033898 + MIR SINE MIR 83 142 -66 28 0 0 0 chrX 72566123 72566151 -90033779 + AT_rich Low_complexity Low_complexity 1 28 0 579 142 44 0 chrX 72567122 72567235 -90032695 + L1MB1 LINE L1 6051 6168 0 26 0 0 0 chrX 72567672 72567698 -90032232 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chrX 72568604 72568639 -90031291 + AT_rich Low_complexity Low_complexity 1 35 0 277 100 0 0 chrX 72568640 72568680 -90031250 + L1MC1 LINE L1 6289 6328 -5 5346 109 18 21 chrX 72568733 72569577 -90030353 + L1PA13 LINE L1 5323 6163 0 21 36 0 0 chrX 72570380 72570408 -90029522 + AT_rich Low_complexity Low_complexity 1 28 0 674 301 149 35 chrX 72571587 72572132 -90027798 + L1M4 LINE L1 4108 4714 -1432 2168 34 0 4 chrX 72572569 72572833 -90027097 + L1PA3 LINE L1 5893 6155 0 856 325 69 60 chrX 72572997 72573762 -90026168 - L2 LINE L2 -65 3207 2440 643 278 29 5 chrX 72573846 72574264 -90025666 - LTR33 LTR ERVL 0 521 1 963 326 48 17 chrX 72574484 72574965 -90024965 - ERVL LTR ERVL -375 5389 4894 1747 135 159 44 chrX 72574975 72575359 -90024571 - MSTA LTR MaLR 0 428 1 9734 135 7 35 chrX 72575359 72576982 -90022948 - MSTA-int LTR MaLR 0 1580 3 1448 168 224 14 chrX 72576984 72577336 -90022594 - MSTA LTR MaLR 0 428 3 218 54 0 27 chrX 72577402 72577439 -90022491 + (TAA)n Simple_repeat Simple_repeat 3 38 0 2470 360 86 16 chrX 72577620 72579380 -90020550 - ERVL LTR ERVL -2327 3437 1554 256 396 39 3 chrX 72579449 72579734 -90020196 - ERVL LTR ERVL -3804 1192 898 1783 136 47 73 chrX 72579826 72580209 -90019721 + THE1C LTR MaLR 1 373 -2 1037 206 50 103 chrX 72580249 72580627 -90019303 - MLT1A1 LTR MaLR -7 358 1 1882 114 57 0 chrX 72580802 72581083 -90018847 + AluSx SINE Alu 1 297 -15 2237 77 7 35 chrX 72581085 72581395 -90018535 + AluY SINE Alu 3 303 -8 437 352 51 27 chrX 72581525 72581860 -90018070 - L2 LINE L2 -2497 817 475 305 283 0 40 chrX 72582201 72582300 -90017630 - L1MC4 LINE L1 -1339 6703 6609 22 0 0 0 chrX 72582457 72582479 -90017451 + AT_rich Low_complexity Low_complexity 1 22 0 13024 173 45 10 chrX 72582482 72585540 -90014390 - L1PB2 LINE L1 -3 6864 3916 2180 102 7 7 chrX 72585540 72585835 -90014095 - AluY SINE Alu -16 295 1 13024 173 45 10 chrX 72585835 72588877 -90011053 - L1PB2 LINE L1 -2951 3916 541 1296 129 0 0 chrX 72588877 72589071 -90010859 - L1PB2 LINE L1 -6669 194 1 291 247 68 0 chrX 72589111 72589184 -90010746 - L1MEc LINE L1 -5737 659 582 849 191 12 12 chrX 72589277 72589439 -90010491 + AluJb SINE Alu 135 296 -16 255 270 22 0 chrX 72589718 72589807 -90010123 + L1ME LINE L1 5354 5444 -726 591 309 135 4 chrX 72589957 72590187 -90009743 - MIR SINE MIR -2 260 1 21 36 0 0 chrX 72590531 72590559 -90009371 + AT_rich Low_complexity Low_complexity 1 28 0 9205 180 94 39 chrX 72590566 72591348 -90008582 + L1MCa LINE L1 16 754 -5672 3155 71 2 11 chrX 72591348 72591785 -90008145 + L1PA7 LINE L1 5721 6153 -1 9205 180 94 39 chrX 72591785 72593421 -90006509 + L1MCa LINE L1 754 2563 -3863 1968 287 51 27 chrX 72593427 72594426 -90005504 + L1M4c LINE L1 1 1073 -5068 333 0 0 0 chrX 72594505 72594542 -90005388 + (CA)n Simple_repeat Simple_repeat 1 37 0 1080 284 70 14 chrX 72594542 72595042 -90004888 + L1M4c LINE L1 1096 1623 -4589 * 4641 189 27 9 chrX 72595041 72596241 -90003689 + L1PA16 LINE L1 4936 6155 -11 2368 103 14 24 chrX 72596236 72596606 -90003324 - L1MA3 LINE L1 -346 5959 5594 * 1773 112 4 4 chrX 72596633 72596910 -90003020 - L1MA2 LINE L1 -1 6303 6027 1916 132 10 7 chrX 72596913 72597216 -90002714 - L1MA2 LINE L1 -496 5808 5505 1542 158 51 22 chrX 72597216 72597501 -90002429 + L1MA3 LINE L1 5980 6277 -28 252 86 0 0 chrX 72597501 72597536 -90002394 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1542 158 51 22 chrX 72597536 72597565 -90002365 + L1MA3 LINE L1 6277 6304 -1 28 0 0 0 chrX 72597569 72597597 -90002333 + AT_rich Low_complexity Low_complexity 1 28 0 10250 225 39 40 chrX 72597597 72597979 -90001951 + L1MA10 LINE L1 3005 3386 -4367 2413 72 3 3 chrX 72597979 72598285 -90001645 + AluY SINE Alu 1 306 -5 10250 225 39 40 chrX 72598285 72599233 -90000697 + L1MA10 LINE L1 3386 4333 -3420 3512 127 67 14 chrX 72599233 72599857 -90000073 + MER51D LTR ERV1 1 657 0 10250 225 39 40 chrX 72599857 72600738 -89999192 + L1MA10 LINE L1 4333 5213 -2540 1923 175 18 3 chrX 72600738 72601076 -89998854 + MER61A LTR ERV1 1 343 0 10250 225 39 40 chrX 72601076 72603607 -89996323 + L1MA10 LINE L1 5213 7753 0 534 219 11 5 chrX 72603651 72603830 -89996100 + L1M4 LINE L1 3089 3268 -2878 308 215 32 0 chrX 72604384 72604477 -89995453 + L1M4 LINE L1 3249 3344 -2802 2246 153 5 15 chrX 72604480 72604878 -89995052 - L1PA16 LINE L1 -4 6162 5769 6637 108 9 1 chrX 72604948 72605358 -89994572 + L1P3 LINE L1 1 406 -6055 216 0 0 0 chrX 72605358 72605382 -89994548 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6637 108 9 1 chrX 72605382 72605897 -89994033 + L1P3 LINE L1 406 933 -5528 2539 45 3 10 chrX 72605998 72606307 -89993623 - AluY SINE Alu -3 308 2 592 239 0 0 chrX 72607071 72607226 -89992704 + L1M4 LINE L1 2672 2826 -3320 781 130 8 0 chrX 72607797 72607920 -89992010 - L1PA16 LINE L1 -383 5783 5660 1611 189 4 11 chrX 72607933 72608213 -89991717 + AluSx SINE Alu 3 280 -32 1123 39 13 13 chrX 72608214 72608367 -89991563 + (GAAA)n Simple_repeat Simple_repeat 3 155 0 390 303 0 0 chrX 72608377 72608519 -89991411 + L1M4 LINE L1 3342 3483 -2663 21 36 0 0 chrX 72608600 72608628 -89991302 + AT_rich Low_complexity Low_complexity 1 28 0 323 305 0 0 chrX 72608660 72608755 -89991175 - LTR33 LTR ERVL -5 516 422 1279 159 8 4 chrX 72608760 72608999 -89990931 - L1M4 LINE L1 -389 5795 5556 221 39 58 39 chrX 72609165 72609217 -89990713 + A-rich Low_complexity Low_complexity 2 54 0 198 219 188 0 chrX 72609439 72609503 -89990427 - MIR SINE MIR 0 262 187 316 301 212 0 chrX 72609552 72609665 -89990265 - MIR SINE MIR -90 172 36 289 204 124 53 chrX 72610151 72610264 -89989666 - L1MC5 LINE L1 -50 7911 7791 22 0 0 0 chrX 72610348 72610370 -89989560 + AT_rich Low_complexity Low_complexity 1 22 0 2058 113 37 13 chrX 72610371 72610750 -89989180 - L1MA3 LINE L1 -2 6303 5916 8888 174 32 9 chrX 72610768 72613803 -89986127 + L1PBa LINE L1 7 3393 -3469 186 43 0 0 chrX 72613803 72613826 -89986104 + (TA)n Simple_repeat Simple_repeat 1 23 0 8888 174 32 9 chrX 72613826 72614976 -89984954 + L1PBa LINE L1 3393 4514 -2348 4119 113 8 3 chrX 72614976 72615600 -89984330 + L1PB1 LINE L1 5523 6151 0 11112 197 72 8 chrX 72615614 72619825 -89980105 - L1MA3 LINE L1 -379 7345 2849 706 0 0 33 chrX 72619825 72619915 -89980015 - L1PA3 LINE L1 -1 6154 6068 1989 25 12 0 chrX 72619915 72620155 -89979775 + L1PA3 LINE L1 5814 6056 -99 14439 201 22 8 chrX 72620159 72620963 -89978967 - L1MA3 LINE L1 -4717 2848 2056 306 0 0 0 chrX 72620963 72620997 -89978933 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 14439 201 22 8 chrX 72620997 72622895 -89977035 - L1MA3 LINE L1 -5509 2056 185 210 37 0 0 chrX 72622895 72622922 -89977008 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 14439 201 22 8 chrX 72622922 72622992 -89976938 - L1MA3 LINE L1 -7380 185 117 2131 159 5 22 chrX 72622992 72623362 -89976568 - THE1B LTR MaLR 0 364 1 14439 201 22 8 chrX 72623362 72623388 -89976542 - L1MA3 LINE L1 -7448 117 10 2950 225 43 42 chrX 72623454 72624588 -89975342 - L1MB4 LINE L1 -5 6175 5035 724 222 103 35 chrX 72624596 72625002 -89974928 - L1MB4 LINE L1 -2389 3757 3324 728 178 44 7 chrX 72625046 72625181 -89974749 - THE1C LTR MaLR -235 140 1 8232 230 34 17 chrX 72625203 72627747 -89972183 - L1PA15 LINE L1 -1 7602 5104 2135 135 0 3 chrX 72627747 72628058 -89971872 - AluSx SINE Alu -2 310 1 8232 230 34 17 chrX 72628058 72628355 -89971575 - L1PA15 LINE L1 -2499 5104 4814 820 68 0 0 chrX 72628355 72628458 -89971472 - L1PA5 LINE L1 -8 6146 6044 8232 230 34 17 chrX 72628458 72629084 -89970846 - L1PA15 LINE L1 -2789 4814 4077 2150 187 181 55 chrX 72629085 72629722 -89970208 + MER50 LTR ERV1 18 734 0 3205 277 40 23 chrX 72629722 72631584 -89968346 - L1PA15 LINE L1 -3499 4085 2182 307 292 0 10 chrX 72631831 72631927 -89968003 - L1PA15 LINE L1 -5401 2180 2086 733 341 62 40 chrX 72632050 72632646 -89967284 - L1PA15 LINE L1 -6177 1397 789 825 269 51 9 chrX 72632674 72633102 -89966828 - L1 LINE L1 -2990 3156 2711 1555 194 12 21 chrX 72633103 72633428 -89966502 + THE1C LTR MaLR 54 375 0 2999 236 18 6 chrX 72633429 72634227 -89965703 - L1PBa LINE L1 -3921 2941 2135 3857 136 1 23 chrX 72634233 72634529 -89965401 - L1PB2 LINE L1 0 6151 5850 2297 78 0 3 chrX 72634529 72634846 -89965084 + AluSp SINE Alu 1 316 0 3857 136 1 23 chrX 72634846 72635196 -89964734 - L1PB2 LINE L1 -301 5850 5518 277 261 11 0 chrX 72635199 72635287 -89964643 - L1 LINE L1 -1854 4292 4204 6649 211 22 19 chrX 72635287 72638127 -89961803 - L1PBb LINE L1 -2036 4167 1216 1119 115 0 0 chrX 72638127 72638292 -89961638 - L1PA11 LINE L1 0 6174 6010 6649 211 22 19 chrX 72638292 72639506 -89960424 - L1PBb LINE L1 -4987 1216 7 1245 243 53 15 chrX 72639477 72639815 -89960115 - L1PBa LINE L1 -5224 980 630 * 2743 295 36 24 chrX 72639824 72640947 -89958983 - L1PBa LINE L1 -5642 1221 86 2273 83 0 0 chrX 72690947 72691247 -89908683 + L1PA8 LINE L1 5872 6171 -1 4638 217 55 27 chrX 72691247 72692899 -89907031 + MER109 Unknown Unknown 4 1392 -1040 1324 146 9 0 chrX 72692899 72693112 -89906818 - AluSg/x SINE Alu -2 310 96 10309 41 9 0 chrX 72694310 72696363 -89903567 + L1PA3 LINE L1 4112 6172 0 1041 125 18 0 chrX 72697286 72697454 -89902476 - L1MA2 LINE L1 0 6304 6134 10318 185 49 4 chrX 72697481 72700616 -89899314 - L1MA2 LINE L1 0 6304 2930 6107 72 39 0 chrX 72700620 72701577 -89898353 - L1PA7 LINE L1 -6 6148 5189 21 0 0 0 chrX 72702284 72702305 -89897625 + AT_rich Low_complexity Low_complexity 1 21 0 279 54 0 0 chrX 72702324 72702361 -89897569 + (TG)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chrX 72703048 72703074 -89896856 + AT_rich Low_complexity Low_complexity 1 26 0 266 311 134 17 chrX 72704018 72704137 -89895793 + L2 LINE L2 3139 3271 -1 573 288 70 67 chrX 72704239 72704642 -89895288 + L2 LINE L2 2910 3313 0 353 313 153 12 chrX 72707577 72707740 -89892190 - MIR3 SINE MIR -15 193 8 1538 183 12 50 chrX 72708000 72708323 -89891607 - AluJb SINE Alu 0 312 2 26 0 0 0 chrX 72708441 72708467 -89891463 + AT_rich Low_complexity Low_complexity 1 26 0 320 365 39 6 chrX 72710029 72710185 -89889745 + MIR3 SINE MIR 32 192 -16 555 93 0 0 chrX 72710924 72710999 -89888931 - MADE1 DNA Mariner -2 78 4 5253 39 0 0 chrX 72711360 72711995 -89887935 + L1PA4 LINE L1 5515 6149 -6 254 234 16 0 chrX 72712087 72712151 -89887779 - MER113 DNA MER1_type? -454 67 3 213 269 19 0 chrX 72712152 72712204 -89887726 + L3 LINE CR1 1525 1577 0 2070 137 3 10 chrX 72712773 72713086 -89886844 + AluSx SINE Alu 1 311 -1 1842 147 0 10 chrX 72713305 72713605 -89886325 - AluSx SINE Alu -15 297 1 208 230 30 110 chrX 72713621 72713721 -89886209 - MIR SINE MIR -64 198 107 331 334 93 47 chrX 72714269 72714721 -89885209 - L2 LINE L2 -1049 2265 1793 809 185 53 32 chrX 72717477 72717666 -89882264 + MIR SINE MIR 11 203 -59 282 73 0 0 chrX 72717879 72717920 -89882010 + (TG)n Simple_repeat Simple_repeat 2 42 0 689 223 14 76 chrX 72719044 72719255 -89880675 + MIR SINE MIR 7 204 -58 207 100 0 0 chrX 72719309 72719339 -89880591 + (CACCAT)n Simple_repeat Simple_repeat 3 32 0 28 29 0 0 chrX 72720318 72720353 -89879577 + AT_rich Low_complexity Low_complexity 1 35 0 4186 131 20 6 chrX 72720353 72721055 -89878875 - L1MA3 LINE L1 -1 6304 5593 286 104 42 0 chrX 72721059 72721107 -89878823 - L1MA3 LINE L1 0 7724 7675 224 254 18 0 chrX 72721107 72721162 -89878768 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 4959 157 58 28 chrX 72721164 72722824 -89877106 - L1MA3 LINE L1 -57 7667 5952 2021 137 0 17 chrX 72723065 72723364 -89876566 + AluSx SINE Alu 3 296 -16 5117 250 92 66 chrX 72723704 72726602 -89873328 + MER109 Unknown Unknown 1 2102 -330 8006 188 25 21 chrX 72726614 72729774 -89870156 - L1MA3 LINE L1 -2055 5510 1650 2584 51 0 0 chrX 72729774 72730085 -89869845 - AluY SINE Alu 0 311 1 8006 188 25 21 chrX 72730085 72731726 -89868204 - L1MA3 LINE L1 -5915 1650 18 1880 127 50 11 chrX 72731837 72732120 -89867810 + AluSx SINE Alu 1 294 -18 603 238 7 14 chrX 72732459 72732606 -89867324 + MLT1A2 LTR MaLR 1 146 -228 243 172 0 47 chrX 72732624 72732688 -89867242 - L1MCa LINE L1 -4358 2068 2008 917 171 109 6 chrX 72732716 72732891 -89867039 + MLT1A2 LTR MaLR 182 374 0 237 65 0 0 chrX 72732917 72732948 -89866982 + (CA)n Simple_repeat Simple_repeat 2 32 0 548 286 204 54 chrX 72733530 72734051 -89865879 - L3 LINE CR1 -187 1390 792 1008 272 98 50 chrX 72734455 72734937 -89864993 + MLT1D LTR MaLR 1 505 0 217 323 0 0 chrX 72735126 72735188 -89864742 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 9598 191 41 40 chrX 72735366 72737263 -89862667 + L1M1 LINE L1 19 1912 -5653 2129 144 47 8 chrX 72737263 72737624 -89862306 + THE1C LTR MaLR 1 375 0 8819 154 38 9 chrX 72737624 72739159 -89860771 + THE1C-int LTR MaLR 1 1580 0 1801 174 50 8 chrX 72739159 72739516 -89860414 + THE1C LTR MaLR 1 372 -3 9598 191 41 40 chrX 72739516 72739635 -89860295 + L1M1 LINE L1 1911 2040 -5525 5763 207 48 24 chrX 72739621 72742356 -89857574 + L1M1 LINE L1 2597 5405 -2160 * 15974 197 19 16 chrX 72742358 72749599 -89850331 + L1MA2 LINE L1 452 7723 0 7111 36 0 0 chrX 72749652 72750502 -89849428 - L1P LINE L1 -1908 4238 3389 7708 16 1 0 chrX 72750502 72751530 -89848400 + L1PA3 LINE L1 5130 6158 0 768 184 111 5 chrX 72751530 72751747 -89848183 + L1M1 LINE L1 5620 5859 -1706 * 774 191 0 0 chrX 72751745 72751892 -89848038 - L1M4 LINE L1 -446 5738 5592 518 122 0 11 chrX 72751988 72752078 -89847852 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 1672 182 3 29 chrX 72752081 72752388 -89847542 - AluJb SINE Alu -11 301 3 1995 246 46 25 chrX 72752392 72753112 -89846818 - L1M4 LINE L1 -3135 3509 2775 870 236 10 0 chrX 72753113 72753312 -89846618 - L1M4 LINE L1 -4819 1827 1627 * 1449 258 28 8 chrX 72753309 72753705 -89846225 - L1M4 LINE L1 -5758 784 381 346 324 18 0 chrX 72753774 72753885 -89846045 - MIR3 SINE MIR -5 203 91 319 268 7 131 chrX 72755606 72755759 -89844171 + L2 LINE L2 3176 3309 -4 1015 135 0 0 chrX 72755816 72755957 -89843973 + L1PA13 LINE L1 1 141 -6320 26896 114 6 7 chrX 72755959 72757193 -89842737 + L1PA13 LINE L1 1538 2773 -3696 477 50 0 0 chrX 72757193 72757253 -89842677 + (TA)n Simple_repeat Simple_repeat 1 60 0 26896 114 6 7 chrX 72757253 72760238 -89839692 + L1PA13 LINE L1 2773 5752 -717 6245 86 10 0 chrX 72760238 72761098 -89838832 + L1PA7 LINE L1 5281 6152 -2 737 142 39 0 chrX 72761776 72761903 -89838027 + L1PA13 LINE L1 6344 6475 -3 233 205 39 77 chrX 72762435 72762513 -89837417 + MLT1J2 LTR MaLR 67 141 -309 32289 50 7 2 chrX 72763603 72767676 -89832254 + L1P LINE L1 1 4092 -2054 521 17 0 0 chrX 72767951 72768010 -89831920 + (T)n Simple_repeat Simple_repeat 1 59 0 24165 122 19 4 chrX 72768010 72771855 -89828075 - L1P LINE L1 -964 5182 1277 10296 188 49 16 chrX 72771847 72773852 -89826078 - L1M1 LINE L1 -4629 2936 865 * 1030 250 71 18 chrX 72773857 72774276 -89825654 + L1MB3 LINE L1 2079 2521 -3861 3037 97 16 0 chrX 72774280 72774786 -89825144 - L1P LINE L1 -728 5426 4912 288 98 0 39 chrX 72774771 72774822 -89825108 + L1PA8 LINE L1 5443 5491 -640 * 1841 144 46 3 chrX 72774823 72775108 -89824822 + AluSx SINE Alu 1 297 -15 3345 84 118 0 chrX 72775108 72775593 -89824337 + L1PA8 LINE L1 5618 6159 -13 242 49 0 49 chrX 72775596 72775637 -89824293 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4634 253 22 11 chrX 72775638 72777186 -89822744 + L1MB3 LINE L1 2519 4083 -2299 3930 222 40 15 chrX 72777192 72778752 -89821178 + L1MB2 LINE L1 4562 6144 -27 2326 245 31 16 chrX 72778791 72779533 -89820397 + L1MB3 LINE L1 4088 4840 -1542 4093 191 53 14 chrX 72779556 72780732 -89819198 + L1MB3 LINE L1 5207 6419 0 237 286 0 0 chrX 72780753 72780809 -89819121 - L2 LINE L2 -3 3269 3214 333 333 29 0 chrX 72780854 72780959 -89818971 + MIR3 SINE MIR 47 154 -54 327 318 75 46 chrX 72780965 72781138 -89818792 - MER5A DNA MER1_type -10 179 2 647 124 16 0 chrX 72781989 72782110 -89817820 + GA-rich Low_complexity Low_complexity 2 124 0 181 385 22 0 chrX 72783279 72783370 -89816560 - MIR3 SINE MIR -3 205 113 2299 108 0 0 chrX 72783841 72784148 -89815782 + AluSx SINE Alu 1 307 -5 1027 237 84 16 chrX 72784240 72784561 -89815369 + MER2 DNA MER2_type 2 344 0 238 231 46 46 chrX 72784601 72784666 -89815264 + L2 LINE L2 3207 3271 -1 1988 159 18 12 chrX 72784956 72785295 -89814635 - MER7A DNA MER2_type -7 339 1 1737 265 95 45 chrX 72786724 72787442 -89812488 - MER21B LTR ERV1 -109 754 1 336 380 95 25 chrX 72787655 72787971 -89811959 - L2 LINE L2 0 3272 2935 681 298 70 16 chrX 72788441 72788683 -89811247 + MLT1J LTR MaLR 20 274 -237 1245 227 69 17 chrX 72788692 72789040 -89810890 - MER93b LTR ERV1 -2 371 6 2193 103 3 0 chrX 72789067 72789349 -89810581 + AluSc SINE Alu 1 283 -26 7120 100 5 9 chrX 72789360 72790522 -89809408 - L1MA1 LINE L1 -5 6297 5141 239 256 139 12 chrX 72790643 72790729 -89809201 + MLT1J LTR MaLR 412 508 -3 342 272 78 21 chrX 72791288 72791479 -89808451 + L1MC5 LINE L1 7724 7925 -36 368 233 207 9 chrX 72798196 72798312 -89801618 + MER5A DNA MER1_type 45 183 -6 344 275 14 63 chrX 72798355 72798497 -89801433 - MER5B DNA MER1_type -29 149 15 1019 192 40 68 chrX 72799729 72799979 -89799951 - AluJo SINE Alu -43 269 27 25 0 0 0 chrX 72800452 72800477 -89799453 + AT_rich Low_complexity Low_complexity 1 25 0 225 349 157 42 chrX 72801032 72801198 -89798732 + MER5A DNA MER1_type 1 185 -4 213 371 74 55 chrX 72801291 72801617 -89798313 + L2 LINE L2 2918 3249 -23 2311 92 10 0 chrX 72801687 72801993 -89797937 + AluSc SINE Alu 1 309 0 32 0 0 0 chrX 72803306 72803338 -89796592 + AT_rich Low_complexity Low_complexity 1 32 0 204 303 53 40 chrX 72805670 72805746 -89794184 + L2 LINE L2 3188 3264 -49 22 0 0 0 chrX 72806710 72806732 -89793198 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chrX 72807961 72807993 -89791937 + AT_rich Low_complexity Low_complexity 1 32 0 804 280 105 32 chrX 72807999 72808438 -89791492 - MARNA DNA Mariner -71 515 45 551 358 17 0 chrX 72808443 72808616 -89791314 + MIR3 SINE MIR 27 202 -6 920 187 60 6 chrX 72808740 72808922 -89791008 + MIR SINE MIR 20 211 -51 21 0 0 0 chrX 72808933 72808954 -89790976 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 72809044 72809066 -89790864 + AT_rich Low_complexity Low_complexity 1 22 0 1657 114 11 30 chrX 72809381 72809652 -89790278 - L1MA1 LINE L1 -4 6298 6033 2500 81 0 0 chrX 72809679 72809986 -89789944 + AluSc SINE Alu 1 307 -2 389 116 0 43 chrX 72810468 72810537 -89789393 + MADE1 DNA Mariner 15 80 0 1050 217 13 4 chrX 72811180 72811415 -89788515 + MER96B DNA MER1_type? 1 237 -180 511 301 49 49 chrX 72812817 72813020 -89786910 + MIR SINE MIR 47 249 -13 553 298 23 6 chrX 72813733 72813904 -89786026 + MIR3 SINE MIR 21 194 -14 392 320 3 20 chrX 72814647 72814763 -89785167 - MIR SINE MIR -67 141 28 229 357 9 18 chrX 72815749 72815861 -89784069 - MIR SINE MIR -87 175 65 193 250 0 0 chrX 72816732 72816776 -89783154 + L2 LINE L2 3184 3227 -86 353 291 212 5 chrX 72817028 72817089 -89782841 + MIR SINE MIR 1 48 -214 601 221 0 14 chrX 72817089 72817229 -89782701 + L1MA10 LINE L1 6197 6334 0 353 291 212 5 chrX 72817229 72817370 -89782560 + MIR SINE MIR 48 245 -17 23 33 0 0 chrX 72819426 72819456 -89780474 + AT_rich Low_complexity Low_complexity 1 30 0 1382 209 47 11 chrX 72819762 72820040 -89779890 + AluJb SINE Alu 1 288 -24 344 319 8 8 chrX 72821290 72821409 -89778521 + MIR SINE MIR 25 143 -65 1015 74 34 17 chrX 72823490 72823499 -89776431 + (GAAA)n Simple_repeat Simple_repeat 1 187 0 1015 74 34 17 chrX 72823499 72823674 -89776256 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 531 0 0 0 chrX 72825114 72825173 -89774757 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1936 140 0 4 chrX 72825174 72825453 -89774477 - AluSx SINE Alu -32 280 3 450 94 0 0 chrX 72825824 72825888 -89774042 + (TA)n Simple_repeat Simple_repeat 1 64 0 478 306 67 1 chrX 72826437 72826617 -89773313 - MIR3 SINE MIR -9 199 8 270 0 0 0 chrX 72826845 72826875 -89773055 + (TA)n Simple_repeat Simple_repeat 2 31 0 511 259 18 47 chrX 72827627 72827797 -89772133 - MIR SINE MIR -19 243 79 23 33 0 0 chrX 72827927 72827957 -89771973 + AT_rich Low_complexity Low_complexity 1 30 0 226 299 11 23 chrX 72829340 72829427 -89770503 + Charlie4 DNA MER1_type 1876 1961 0 336 247 22 34 chrX 72829542 72829631 -89770299 - MIR3 SINE MIR -48 160 73 306 228 120 0 chrX 72830017 72830109 -89769821 - MIR SINE MIR -62 146 44 416 312 7 7 chrX 72830476 72830614 -89769316 - LTR67 LTR ERVL -12 545 408 561 115 0 0 chrX 72830890 72830977 -89768953 + (TA)n Simple_repeat Simple_repeat 1 87 0 2166 99 0 26 chrX 72831420 72831732 -89768198 + AluSc SINE Alu 5 308 -1 643 261 56 0 chrX 72833019 72833199 -89766731 - MLT1K LTR MaLR -6 582 393 263 288 18 72 chrX 72833200 72833311 -89766619 - MIR SINE MIR -85 177 73 627 290 97 81 chrX 72833521 72834039 -89765891 + L3 LINE CR1 748 1273 -304 208 274 88 10 chrX 72834052 72834154 -89765776 - MIR SINE MIR 0 262 153 1343 182 10 113 chrX 72834326 72834743 -89765187 + MLT1A2 LTR MaLR 1 374 0 32 91 0 0 chrX 72834891 72834979 -89764951 + AT_rich Low_complexity Low_complexity 1 88 0 715 315 98 0 chrX 72835007 72835242 -89764688 + MIR SINE MIR 5 262 0 1829 207 32 44 chrX 72835684 72836126 -89763804 - L1MB8 LINE L1 -27 6962 6516 2274 167 60 2 chrX 72836126 72836527 -89763403 - MSTB LTR MaLR 0 426 3 6366 196 37 59 chrX 72836529 72837868 -89762062 - MSTB-int LTR MaLR 0 1651 354 2549 27 0 13 chrX 72837868 72838168 -89761762 - AluY SINE Alu -15 296 1 6366 196 37 59 chrX 72838168 72838515 -89761415 - MSTB-int LTR MaLR -1297 354 1 2286 174 49 7 chrX 72838515 72838924 -89761006 - MSTB LTR MaLR 0 426 1 1829 207 32 44 chrX 72838924 72838975 -89760955 - L1MB8 LINE L1 -472 6517 6471 6821 138 40 13 chrX 72838976 72840164 -89759766 - Tigger3b DNA MER2_type -10 1221 1 2061 242 52 41 chrX 72840164 72841455 -89758475 - L1MB8 LINE L1 -536 6459 5183 3283 100 25 2 chrX 72841455 72841945 -89757985 - L1PA14 LINE L1 -2 6159 5659 2061 242 52 41 chrX 72841945 72844358 -89755572 - L1MB8 LINE L1 -1812 5183 2569 2181 106 0 14 chrX 72844402 72844694 -89755236 - AluSc SINE Alu -17 292 5 3996 202 52 4 chrX 72844766 72845947 -89753983 - L1PB4 LINE L1 -6 6150 4920 500 221 25 0 chrX 72846055 72846177 -89753753 + L1 LINE L1 4561 4685 -1461 7645 27 0 0 chrX 72846177 72847260 -89752670 + L1PA4 LINE L1 5069 6151 -4 6225 217 24 55 chrX 72847293 72849039 -89750891 + L1 LINE L1 2723 4408 -1738 405 0 0 0 chrX 72849039 72849084 -89750846 + (CA)n Simple_repeat Simple_repeat 2 46 0 6225 217 24 55 chrX 72849084 72849215 -89750715 + L1 LINE L1 4408 4542 -1604 1712 293 62 18 chrX 72849402 72850577 -89749353 - L1MB8 LINE L1 -4559 2400 1190 260 324 18 9 chrX 72850921 72851032 -89748898 - L1MB8 LINE L1 -5667 1188 1077 1841 156 58 19 chrX 72851058 72851417 -89748513 + THE1C LTR MaLR 3 375 0 2210 136 0 6 chrX 72851441 72851793 -89748137 + THE1C-int LTR MaLR 1 350 -1230 202 320 155 0 chrX 72852335 72852438 -89747492 - L2 LINE L2 -14 3299 3181 6616 124 24 80 chrX 72853123 72854347 -89745583 + THE1C-int LTR MaLR 426 1580 0 1431 185 41 77 chrX 72854347 72854736 -89745194 + THE1C LTR MaLR 1 375 0 2348 279 81 40 chrX 72854782 72855667 -89744263 - L1MB8 LINE L1 -5915 944 23 890 224 11 6 chrX 72855669 72855848 -89744082 + MER58A DNA MER1_type 45 224 0 497 294 71 12 chrX 72856857 72857027 -89742903 + MIR3 SINE MIR 5 184 -24 183 42 0 0 chrX 72857079 72857103 -89742827 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 237 250 21 125 chrX 72857609 72857753 -89742177 + MIR SINE MIR 124 252 -10 378 107 0 0 chrX 72858121 72858177 -89741753 + (TG)n Simple_repeat Simple_repeat 1 56 0 384 300 100 47 chrX 72860706 72860896 -89739034 - MIR SINE MIR 0 262 63 185 389 62 18 chrX 72861288 72861401 -89738529 - MIR SINE MIR -121 141 24 554 144 29 0 chrX 72861548 72861652 -89738278 + L1MB4 LINE L1 6074 6180 0 5029 79 5 0 chrX 72861871 72862543 -89737387 - L1PA8 LINE L1 0 6172 5498 356 250 19 9 chrX 72863212 72863320 -89736610 - MER113 DNA MER1_type? -53 468 360 268 266 53 0 chrX 72863323 72863436 -89736494 + L1MB5 LINE L1 2111 2229 -4155 374 254 67 36 chrX 72863454 72863706 -89736224 + L1MB5 LINE L1 3495 3753 -2629 465 109 42 34 chrX 72863706 72863825 -89736105 + GA-rich Low_complexity Low_complexity 1 120 0 3740 202 50 84 chrX 72863825 72864346 -89735584 + L1MB5 LINE L1 3746 4283 -2099 2377 65 0 19 chrX 72864346 72864656 -89735274 + AluY SINE Alu 1 304 -7 3740 202 50 84 chrX 72864656 72865464 -89734466 + L1MB5 LINE L1 4283 5029 -1353 4010 201 64 7 chrX 72865481 72866610 -89733320 + L1MB5 LINE L1 5207 6403 -7 366 262 25 57 chrX 72866622 72866744 -89733186 + MER5B DNA MER1_type 60 177 -1 2038 185 101 47 chrX 72867068 72867107 -89732823 - MLT2B1 LTR ERVL 0 520 485 2082 178 8 97 chrX 72867107 72867641 -89732289 - MER66B LTR ERV1 0 486 1 2038 185 101 47 chrX 72867641 72868094 -89731836 - MLT2B1 LTR ERVL -35 485 1 234 292 35 11 chrX 72868395 72868489 -89731441 + MIR SINE MIR 46 142 -66 3359 189 71 7 chrX 72868867 72869209 -89730721 - L1MA4A LINE L1 -23 6131 5812 369 0 0 0 chrX 72869209 72869250 -89730680 + (TG)n Simple_repeat Simple_repeat 2 42 0 3359 189 71 7 chrX 72869250 72869653 -89730277 - L1MA4A LINE L1 -342 5812 5354 2744 74 82 5 chrX 72869861 72870265 -89729665 - L1PA13 LINE L1 -5 6158 5724 585 313 123 32 chrX 72870802 72871432 -89728498 - L2 LINE L2 -2 3311 2618 383 302 36 36 chrX 72871975 72872114 -89727816 - MIR3 SINE MIR -57 151 13 190 247 26 0 chrX 72872381 72872458 -89727472 + CT-rich Low_complexity Low_complexity 3 81 0 2090 143 0 0 chrX 72873011 72873312 -89726618 + AluSx SINE Alu 3 303 -9 435 354 51 5 chrX 72873392 72873582 -89726348 - MIR SINE MIR -29 233 37 788 56 0 9 chrX 72873843 72873950 -89725980 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 24 0 0 0 chrX 72874043 72874067 -89725863 + AT_rich Low_complexity Low_complexity 1 24 0 509 264 8 0 chrX 72874086 72874211 -89725719 - MIR3 SINE MIR -14 194 69 205 238 31 163 chrX 72874524 72874684 -89725246 + MIR3 SINE MIR 16 154 -54 38 22 0 0 chrX 72874794 72874839 -89725091 + AT_rich Low_complexity Low_complexity 1 45 0 223 130 14 29 chrX 72874844 72874913 -89725017 + (TTATA)n Simple_repeat Simple_repeat 5 72 0 1039 84 0 0 chrX 72875225 72875367 -89724563 + AluY SINE Alu 167 308 -3 198 128 0 0 chrX 72875571 72875610 -89724320 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 199 267 0 0 chrX 72876670 72876715 -89723215 - L2 LINE L2 -7 3306 3262 423 295 13 40 chrX 72877736 72877885 -89722045 - MIR SINE MIR -70 192 48 327 25 0 0 chrX 72878398 72878438 -89721492 + (TG)n Simple_repeat Simple_repeat 1 40 0 2337 93 0 7 chrX 72878874 72879176 -89720754 + AluSg SINE Alu 1 300 -10 2317 109 0 0 chrX 72879412 72879724 -89720206 + AluSq SINE Alu 1 312 -1 591 264 29 7 chrX 72879760 72879900 -89720030 - MIR3 SINE MIR -46 162 20 26 0 0 0 chrX 72880307 72880333 -89719597 + AT_rich Low_complexity Low_complexity 1 26 0 7857 14 0 0 chrX 72881240 72882334 -89717596 + L1PA2 LINE L1 5055 6155 0 2118 55 0 0 chrX 72884357 72884613 -89715317 + AluY SINE Alu 1 256 -55 333 0 0 0 chrX 72884622 72884659 -89715271 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 431 233 210 6 chrX 72884664 72884840 -89715090 - L3 LINE CR1 -199 1378 1167 25 65 0 0 chrX 72885712 72885758 -89714172 + AT_rich Low_complexity Low_complexity 1 46 0 463 293 29 7 chrX 72885783 72885923 -89714007 - MIR SINE MIR -3 259 117 186 344 0 0 chrX 72886169 72886230 -89713700 + L2 LINE L2 3210 3270 -2 258 324 50 22 chrX 72886569 72886708 -89713222 - MIR3 SINE MIR -2 206 64 231 218 0 0 chrX 72887083 72887138 -89712792 + (TG)n Simple_repeat Simple_repeat 2 56 0 730 242 134 41 chrX 72887152 72887570 -89712360 - L1ME4a LINE L1 -105 6016 5560 897 154 98 5 chrX 72887708 72887922 -89712008 - L1MA7 LINE L1 -12 6279 6046 643 193 240 0 chrX 72888009 72888159 -89711771 - MER5A DNA MER1_type -3 186 1 26 74 0 0 chrX 72888892 72888946 -89710984 + AT_rich Low_complexity Low_complexity 1 54 0 290 289 196 40 chrX 72889063 72889288 -89710642 + MIR SINE MIR 2 261 -1 452 294 72 40 chrX 72889468 72889708 -89710222 - MIR SINE MIR -1 261 8 25976 130 10 15 chrX 72890688 72894062 -89705868 - L1PA8 LINE L1 0 6487 3179 2086 136 3 0 chrX 72894062 72894371 -89705559 - AluSq SINE Alu -3 310 1 25976 130 10 15 chrX 72894371 72896254 -89703676 - L1PA8 LINE L1 -3308 3179 1289 1448 135 8 0 chrX 72896356 72896593 -89703337 - L1PA8 LINE L1 -5106 1355 1117 674 163 12 38 chrX 72896594 72896748 -89703182 + THE1C LTR MaLR 245 375 0 441 373 100 37 chrX 72896757 72897045 -89702885 + L2 LINE L2 1977 2245 -1027 300 111 0 0 chrX 72897045 72897090 -89702840 + (CA)n Simple_repeat Simple_repeat 2 46 0 441 373 100 37 chrX 72897090 72897223 -89702707 + L2 LINE L2 2245 2368 -904 516 254 23 0 chrX 72897223 72897353 -89702577 - MER94 DNA DNA 0 134 2 441 373 100 37 chrX 72897353 72897977 -89701953 + L2 LINE L2 2368 3091 -181 297 185 0 0 chrX 72898398 72898463 -89701467 + (TG)n Simple_repeat Simple_repeat 2 66 0 253 167 42 14 chrX 72898483 72898555 -89701375 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 459 289 43 10 chrX 72898587 72898795 -89701135 + L1MDa LINE L1 1554 1768 -4772 252 256 168 0 chrX 72898878 72899003 -89700927 + L1MDa LINE L1 1921 2066 -4474 3568 253 52 46 chrX 72899017 72899292 -89700638 + L1 LINE L1 15 287 -5750 304 87 0 0 chrX 72899292 72899338 -89700592 - LTR5 LTR ERVK -164 805 760 3568 253 52 46 chrX 72899338 72899860 -89700070 + L1 LINE L1 287 805 -5232 233 73 0 24 chrX 72899860 72899901 -89700029 + (CA)n Simple_repeat Simple_repeat 2 41 0 3568 253 52 46 chrX 72899901 72900281 -89699649 + L1 LINE L1 805 1181 -4856 2246 119 0 0 chrX 72900281 72900593 -89699337 + AluSx SINE Alu 1 312 0 3568 253 52 46 chrX 72900593 72901325 -89698605 + L1 LINE L1 1181 1971 -4066 7840 227 36 8 chrX 72901326 72902981 -89696949 + L1M4c LINE L1 12 1711 -5854 917 152 0 6 chrX 72902979 72903144 -89696786 + L1M4c LINE L1 2516 2679 -4886 * 3399 195 30 5 chrX 72903144 72903891 -89696039 + L1 LINE L1 4422 5186 -1142 * 9270 206 45 25 chrX 72903875 72904222 -89695708 + L1MA4 LINE L1 2856 3195 -3105 1999 146 16 0 chrX 72904222 72904530 -89695400 + AluSq SINE Alu 1 313 0 9270 206 45 25 chrX 72904530 72905850 -89694080 + L1MA4 LINE L1 3195 4488 -1812 2227 120 26 9 chrX 72905850 72906199 -89693731 - THE1A LTR MaLR 0 355 1 9270 206 45 25 chrX 72906199 72907873 -89692057 + L1MA4 LINE L1 4488 6268 -32 1265 263 49 42 chrX 72908129 72909178 -89690752 + L1M4c LINE L1 2774 3936 -3629 * 6878 32 3 1 chrX 72909168 72910016 -89689914 - L1P LINE L1 -3454 2692 1843 7425 36 0 0 chrX 72910034 72911091 -89688839 - L1PA3 LINE L1 -3 6152 5097 8760 30 0 0 chrX 72911093 72912143 -89687787 + L1PA3 LINE L1 4038 5087 -1059 4080 44 0 0 chrX 72912141 72912644 -89687286 - L1P LINE L1 -4288 1858 1356 * 944 72 22 0 chrX 72912658 72912797 -89687133 + L1PA4 LINE L1 6014 6155 0 3017 289 29 14 chrX 72912801 72914072 -89685858 + L1M4c LINE L1 3929 5218 -2347 17898 249 29 15 chrX 72914149 72914371 -89685559 + ERVL LTR ERVL 945 1162 -4602 249 83 0 0 chrX 72914371 72914407 -89685523 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 17898 249 29 15 chrX 72914407 72916260 -89683670 + ERVL LTR ERVL 1162 2988 -2776 2024 172 8 30 chrX 72916260 72916633 -89683297 + MLT1A1 LTR MaLR 1 365 0 17898 249 29 15 chrX 72916633 72918900 -89681030 + ERVL LTR ERVL 2988 5348 -416 463 322 40 39 chrX 72918901 72919297 -89680633 + L1M4 LINE L1 7 1198 -5900 5220 198 75 18 chrX 72919311 72920624 -89679306 - L1 LINE L1 -1120 5026 3640 2277 173 23 21 chrX 72920624 72921051 -89678879 - MSTC LTR MaLR 0 428 1 239 291 25 0 chrX 72921051 72921130 -89678800 - MSTC-int LTR MaLR 0 1735 1655 24 53 0 0 chrX 72921130 72921168 -89678762 + AT_rich Low_complexity Low_complexity 1 38 0 5966 163 20 17 chrX 72921169 72923265 -89676665 - L1PB1 LINE L1 -44 6107 4003 469 176 227 0 chrX 72923269 72923388 -89676542 - MSTC-int LTR MaLR -72 1579 1434 379 279 0 0 chrX 72923501 72923580 -89676350 + MER21B LTR ERV1 12 90 -773 2219 269 45 37 chrX 72923633 72924336 -89675594 + MER21B LTR ERV1 98 806 -57 4098 252 56 40 chrX 72924369 72926151 -89673779 + L1M4 LINE L1 3687 5496 -1671 1742 222 36 19 chrX 72926183 72926597 -89673333 + L1M1 LINE L1 24 444 -7121 1717 113 71 0 chrX 72926590 72926856 -89673074 + THE1A-int LTR MaLR 1295 1579 -1 * 2531 102 8 0 chrX 72926857 72927209 -89672721 + THE1A LTR MaLR 1 355 0 10222 192 12 2 chrX 72927211 72930323 -89669607 + L1PA14 LINE L1 3085 6158 -3 5088 145 33 5 chrX 72930320 72931207 -89668723 + L1MA2 LINE L1 5386 6297 -7 928 245 24 9 chrX 72931243 72931637 -89668293 + L1 LINE L1 3770 4660 -1486 181 246 92 46 chrX 72931942 72932007 -89667923 - L2 LINE L2 -4 3268 3201 216 277 152 45 chrX 72934811 72934923 -89665007 - L2 LINE L2 0 3313 3190 195 328 30 99 chrX 72935160 72935217 -89664713 + L2 LINE L2 3149 3208 -64 2731 124 2 53 chrX 72935217 72935670 -89664260 + MER57B LTR ERV1 1 430 -4 195 328 30 99 chrX 72935670 72935743 -89664187 + L2 LINE L2 3208 3270 -2 40687 67 6 4 chrX 72935866 72941998 -89657932 + L1PA5 LINE L1 11 6154 0 1840 149 26 0 chrX 72942090 72942398 -89657532 - L1PA15 LINE L1 -8 6157 5842 2651 207 13 9 chrX 72942399 72943306 -89656624 - L1PA15 LINE L1 -567 5598 4692 5938 183 14 27 chrX 72943324 72943531 -89656399 - L1MA1 LINE L1 0 6302 6094 1856 161 3 0 chrX 72943531 72943816 -89656114 - AluSx SINE Alu -26 286 1 5938 183 14 27 chrX 72943816 72945700 -89654230 - L1MA1 LINE L1 -208 6094 4188 2187 183 39 7 chrX 72945700 72946115 -89653815 + MSTA LTR MaLR 1 428 0 5938 183 14 27 chrX 72946115 72946398 -89653532 - L1MA1 LINE L1 -2114 4188 3959 7238 49 0 2 chrX 72946398 72947678 -89652252 - L1PA4 LINE L1 0 6155 4910 5938 183 14 27 chrX 72947678 72947714 -89652216 - L1MA1 LINE L1 -2343 3959 3924 1121 203 83 8 chrX 72947723 72948098 -89651832 - L1MA1 LINE L1 -2796 3350 2948 13299 101 19 8 chrX 72948103 72950070 -89649860 - MER61-int LTR ERV1 -1370 3847 1859 231 222 0 0 chrX 72950074 72950128 -89649802 + T-rich Low_complexity Low_complexity 1 54 0 2176 137 16 14 chrX 72950128 72950494 -89649436 - L1PB1 LINE L1 -1 6150 5784 5539 190 30 3 chrX 72950563 72952349 -89647581 - L1PB1 LINE L1 -380 5771 3934 7401 179 9 21 chrX 72952349 72954636 -89645294 + L1PA13 LINE L1 3894 6158 -5 28484 125 21 61 chrX 72954724 72960306 -89639624 + L1PA7 LINE L1 14 5286 -868 228 35 0 0 chrX 72960306 72960335 -89639595 + (CAA)n Simple_repeat Simple_repeat 3 31 0 28484 125 21 61 chrX 72960335 72961169 -89638761 + L1PA7 LINE L1 5286 6151 -3 4731 139 15 3 chrX 72961244 72962649 -89637281 - L1PA16 LINE L1 -1 6165 4717 387 127 0 0 chrX 72962649 72962712 -89637218 - L1 LINE L1 -1980 4166 4104 * 973 275 29 29 chrX 72962710 72963222 -89636708 + L1M4 LINE L1 2787 3298 -2848 2089 190 7 14 chrX 72963709 72964151 -89635779 - L1PB3 LINE L1 -2 6152 5714 2184 152 13 0 chrX 72964152 72964607 -89635323 - L1PB3 LINE L1 -517 5637 5178 303 305 121 0 chrX 72964620 72964761 -89635169 - MIR SINE MIR -74 188 31 398 287 72 39 chrX 72965528 72965709 -89634221 - MIR3 SINE MIR -3 205 19 303 283 100 0 chrX 72966112 72966232 -89633698 + MIR SINE MIR 97 228 -34 3183 95 11 0 chrX 72966997 72967438 -89632492 - L1PA11 LINE L1 -5 6169 5724 585 313 123 32 chrX 72967975 72968605 -89631325 - L2 LINE L2 -2 3311 2618 383 302 36 36 chrX 72969148 72969287 -89630643 - MIR3 SINE MIR -57 151 13 190 247 26 0 chrX 72969554 72969631 -89630299 + CT-rich Low_complexity Low_complexity 3 81 0 2090 143 0 0 chrX 72970184 72970485 -89629445 + AluSx SINE Alu 3 303 -9 435 354 51 5 chrX 72970565 72970755 -89629175 - MIR SINE MIR -29 233 37 788 56 0 9 chrX 72971016 72971123 -89628807 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 24 0 0 0 chrX 72971216 72971240 -89628690 + AT_rich Low_complexity Low_complexity 1 24 0 509 264 8 0 chrX 72971259 72971384 -89628546 - MIR3 SINE MIR -14 194 69 205 238 31 163 chrX 72971697 72971857 -89628073 + MIR3 SINE MIR 16 154 -54 38 22 0 0 chrX 72971967 72972012 -89627918 + AT_rich Low_complexity Low_complexity 1 45 0 223 130 14 29 chrX 72972017 72972086 -89627844 + (TTATA)n Simple_repeat Simple_repeat 5 72 0 1039 84 0 0 chrX 72972398 72972540 -89627390 + AluY SINE Alu 167 308 -3 198 128 0 0 chrX 72972744 72972783 -89627147 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1520 217 9 32 chrX 72973426 72973980 -89625950 - L1M3 LINE L1 -669 5499 4954 10461 134 19 2 chrX 72973980 72976500 -89623430 - L1PA8 LINE L1 0 6487 3955 469 90 0 0 chrX 72976504 72976571 -89623359 + AluSp/q SINE Alu 235 301 -12 2334 201 23 50 chrX 72976596 72977409 -89622521 - L1PA8 LINE L1 -4734 1141 717 2648 180 20 16 chrX 72977414 72977913 -89622017 - L1PA8 LINE L1 -5372 503 3 366 227 17 67 chrX 72977959 72978078 -89621852 - L1M3 LINE L1 -1207 4939 4827 3872 230 59 49 chrX 72978089 72979501 -89620429 - L1M4 LINE L1 -822 5324 3899 31 58 0 0 chrX 72979528 72979580 -89620350 + AT_rich Low_complexity Low_complexity 1 52 0 1317 179 43 25 chrX 72979672 72979952 -89619978 + MLT2B1 LTR ERVL 1 285 -235 12719 220 32 22 chrX 72980083 72981727 -89618203 + ERVL-B2 LTR ERVL 1 1684 -4080 7509 31 1 1 chrX 72981727 72982671 -89617259 + L1PA3 LINE L1 5209 6152 -3 12719 220 32 22 chrX 72982671 72983808 -89616122 + ERVL-B2 LTR ERVL 1684 2808 -2956 2125 224 41 7 chrX 72983828 72984293 -89615637 + ERVL-B2 LTR ERVL 3708 4188 -1576 * 2484 176 20 54 chrX 72984279 72984836 -89615094 + ERVL-B2 LTR ERVL 5227 5764 0 945 189 62 25 chrX 72984836 72984922 -89615008 + Ricksha DNA DNA 342 436 -818 1974 148 83 9 chrX 72984922 72985261 -89614669 - THE1B LTR MaLR 0 364 1 10908 122 7 1 chrX 72985261 72986831 -89613099 - THE1B-int LTR MaLR 0 1580 1 1405 141 82 35 chrX 72986832 72987122 -89612808 - THE1B LTR MaLR -1 363 1 * 1787 196 30 61 chrX 72987122 72987550 -89612380 + MLT2B2 LTR ERVL 88 502 -13 948 157 15 11 chrX 72988508 72988770 -89611160 + GA-rich Low_complexity Low_complexity 1 263 0 1929 172 94 10 chrX 72988803 72989198 -89610732 + MSTA LTR MaLR 1 428 0 8577 190 33 11 chrX 72989198 72990813 -89609117 + MSTA-int LTR MaLR 1 1651 0 1965 151 118 23 chrX 72990813 72991204 -89608726 + MSTA LTR MaLR 1 428 0 585 240 106 28 chrX 72991230 72991513 -89608417 - L1ME4a LINE L1 -201 5920 5616 411 304 95 24 chrX 72991609 72991777 -89608153 - MIR SINE MIR -63 199 20 258 275 0 0 chrX 72992173 72992253 -89607677 + CT-rich Low_complexity Low_complexity 1 80 0 353 329 94 13 chrX 72992487 72992636 -89607294 + MIR SINE MIR 34 194 -68 589 308 76 0 chrX 72992719 72992917 -89607013 + MIR SINE MIR 40 252 -10 246 309 26 22 chrX 72993643 72993873 -89606057 - L1ME4a LINE L1 -743 5403 5173 719 363 109 1 chrX 72993908 72994428 -89605502 + L2 LINE L2 2738 3311 -2 499 308 91 19 chrX 72994522 72994830 -89605100 - L1ME4a LINE L1 -230 5891 5562 458 303 20 82 chrX 72995318 72995513 -89604417 - MIR SINE MIR -71 191 9 16351 75 2 1 chrX 72996309 72999336 -89600594 + L1PA6 LINE L1 3136 6154 0 1823 255 27 29 chrX 72999336 73000003 -89599927 + L1P LINE L1 3117 3782 -2364 2191 197 26 0 chrX 73000006 73000423 -89599507 + MSTA LTR MaLR 1 428 0 4287 210 8 37 chrX 73000423 73001386 -89598544 + MSTA-int LTR MaLR 1 935 -716 2569 196 35 0 chrX 73001399 73001888 -89598042 + MSTA-int LTR MaLR 1144 1649 -2 2331 176 14 19 chrX 73001898 73002324 -89597606 + MSTA LTR MaLR 3 426 -2 2411 248 7 2 chrX 73002329 73002939 -89596991 + L1 LINE L1 3784 4396 -1750 2149 246 59 20 chrX 73002942 73003654 -89596276 + L1 LINE L1 4518 5257 -889 4362 64 25 47 chrX 73003654 73004708 -89595222 + MER11A LTR ERVK 1 1266 0 4534 182 20 16 chrX 73004710 73005617 -89594313 + L1PA16 LINE L1 5254 6163 -3 234 274 121 0 chrX 73006121 73006278 -89593652 - L1ME4a LINE L1 -4 6117 5942 21 36 0 0 chrX 73006393 73006421 -89593509 + AT_rich Low_complexity Low_complexity 1 28 0 531 252 29 0 chrX 73006643 73006663 -89593267 + MIR SINE MIR 37 55 -183 2109 110 17 0 chrX 73006663 73006954 -89592976 + AluSx SINE Alu 1 296 -16 531 252 29 0 chrX 73006954 73007069 -89592861 + MIR SINE MIR 55 176 -62 1805 140 0 28 chrX 73007093 73007379 -89592551 + AluSx SINE Alu 1 278 -34 1263 11 17 28 chrX 73007381 73007895 -89592035 + (GAAA)n Simple_repeat Simple_repeat 1 508 0 1572 210 52 9 chrX 73008366 73008695 -89591235 + MSTB LTR MaLR 1 343 -83 1192 75 0 0 chrX 73008775 73008936 -89590994 - L1MA1 LINE L1 0 6302 6142 979 121 0 29 chrX 73008947 73009087 -89590843 - AluSg/x SINE Alu -43 269 134 233 61 0 0 chrX 73009087 73009120 -89590810 - L1MA1 LINE L1 -146 6156 6124 423 310 18 44 chrX 73009760 73009989 -89589941 + MARNA DNA Mariner 10 232 -354 332 287 84 31 chrX 73010873 73010997 -89588933 + MIR SINE MIR 62 202 -60 1021 115 6 0 chrX 73010997 73011154 -89588776 + L1PB1 LINE L1 5992 6149 -2 332 287 84 31 chrX 73011154 73011208 -89588722 + MIR SINE MIR 202 252 -10 441 242 76 8 chrX 73013913 73014045 -89585885 - MIR3 SINE MIR -14 194 54 546 294 31 31 chrX 73014652 73014846 -89585084 - MIR SINE MIR -62 200 7 1001 129 0 0 chrX 73014899 73015046 -89584884 - L1PB3 LINE L1 -185 5969 5823 294 29 0 0 chrX 73015872 73015907 -89584023 + (TC)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chrX 73015906 73015937 -89583993 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 460 335 46 32 chrX 73016095 73016376 -89583554 + L2 LINE L2 2396 2680 -634 394 253 162 26 chrX 73016399 73016553 -89583377 - MIR SINE MIR -4 258 84 1713 192 154 24 chrX 73017511 73018017 -89581913 + LTR49 LTR ERV1 1 572 -23 189 379 112 9 chrX 73018908 73019122 -89580808 - L2 LINE L2 -398 2916 2681 1725 171 0 27 chrX 73019122 73019421 -89580509 + AluJb SINE Alu 1 291 -21 469 234 27 0 chrX 73019531 73019642 -89580288 + MER81 DNA DNA 1 114 0 2610 98 16 0 chrX 73021173 73021539 -89578391 + L1PA11 LINE L1 5798 6169 -5 303 283 100 0 chrX 73022304 73022424 -89577506 - MIR SINE MIR -34 228 97 398 287 72 39 chrX 73022827 73023008 -89576922 + MIR3 SINE MIR 19 205 -3 303 305 121 0 chrX 73023775 73023916 -89576014 + MIR SINE MIR 31 188 -74 2184 152 13 0 chrX 73023929 73024384 -89575546 + L1PB3 LINE L1 5178 5637 -517 2089 190 7 14 chrX 73024385 73024827 -89575103 + L1PB3 LINE L1 5714 6152 -2 580 293 22 28 chrX 73025654 73025835 -89574095 - MIR3 SINE MIR -26 182 3 2051 130 3 3 chrX 73026061 73026361 -89573569 - AluSx SINE Alu -11 301 2 452 294 78 0 chrX 73027162 73027315 -89572615 + MIR3 SINE MIR 37 201 -7 325 279 174 25 chrX 73028312 73028513 -89571417 + L2 LINE L2 3083 3313 0 2253 115 6 35 chrX 73029362 73029728 -89570202 + THE1A LTR MaLR 1 355 0 27 73 0 0 chrX 73030966 73031021 -89568909 + AT_rich Low_complexity Low_complexity 1 55 0 681 311 17 13 chrX 73031458 73031693 -89568237 - MIR SINE MIR 0 262 27 2950 188 55 11 chrX 73032741 73033449 -89566481 - Charlie1a DNA MER1_type -11 1444 706 11612 98 4 3 chrX 73033453 73035983 -89563947 + L1PA7 LINE L1 3631 6154 0 3909 162 15 21 chrX 73036019 73037234 -89562696 + L1M1 LINE L1 4555 5766 -534 5729 224 91 53 chrX 73037244 73038853 -89561077 + L1PA13 LINE L1 1 1671 -5116 4965 115 22 0 chrX 73038851 73039606 -89560324 + L1PA13 LINE L1 5392 6163 0 * 970 192 11 0 chrX 73039660 73039837 -89560093 - MER58B DNA MER1_type -24 317 139 182 215 46 77 chrX 73040384 73040449 -89559481 + L2 LINE L2 3206 3268 -4 180 333 35 23 chrX 73040836 73040923 -89559007 + MIR SINE MIR 121 208 -54 252 238 10 109 chrX 73041897 73041929 -89558001 + L1MC/D LINE L1 5563 5597 -2211 2227 80 0 14 chrX 73041929 73042260 -89557670 - AluY SINE Alu 0 327 1 252 238 10 109 chrX 73042260 73042327 -89557603 + L1MC/D LINE L1 5597 5653 -2155 268 250 50 74 chrX 73042471 73042634 -89557296 - MIR SINE MIR -36 226 79 974 174 34 0 chrX 73042644 73042822 -89557108 + L1PA16 LINE L1 5974 6157 -9 2275 127 14 27 chrX 73043117 73043486 -89556444 + THE1B LTR MaLR 1 364 0 9626 109 101 0 chrX 73043486 73044921 -89555009 + THE1B-int LTR MaLR 1 1580 0 2165 146 11 30 chrX 73044921 73045292 -89554638 + THE1B LTR MaLR 1 364 0 428 175 10 10 chrX 73045528 73045631 -89554299 - L1MA9 LINE L1 -1 6311 6209 900 209 132 33 chrX 73045644 73045917 -89554013 - L1MD2 LINE L1 -246 6113 5814 2174 134 19 11 chrX 73045940 73046313 -89553617 - L1PB1 LINE L1 0 6151 5776 677 76 0 80 chrX 73046313 73046566 -89553364 + (TA)n Simple_repeat Simple_repeat 1 232 0 3351 193 8 4 chrX 73046569 73046594 -89553336 - L1PB1 LINE L1 -361 5790 5767 974 31 0 67 chrX 73046594 73046787 -89553143 + (TA)n Simple_repeat Simple_repeat 1 180 0 3351 193 8 4 chrX 73046787 73047938 -89551992 - L1PB1 LINE L1 -384 5767 4613 4420 185 11 25 chrX 73047958 73048630 -89551300 + L1MB8 LINE L1 3625 4282 -1864 2572 56 0 0 chrX 73048630 73048932 -89550998 + AluY SINE Alu 1 302 -9 4420 185 11 25 chrX 73048932 73049220 -89550710 + L1MB8 LINE L1 4282 4572 -1574 203 184 0 0 chrX 73050531 73050569 -89549361 + (TAA)n Simple_repeat Simple_repeat 2 39 0 313 0 0 0 chrX 73051356 73051396 -89548534 + L1PA3 LINE L1 6113 6152 -3 257 51 26 0 chrX 73053384 73053423 -89546507 + (CA)n Simple_repeat Simple_repeat 2 41 0 2402 125 3 16 chrX 73053606 73053975 -89545955 + THE1B LTR MaLR 1 364 0 270 56 0 0 chrX 73054033 73054069 -89545861 + (CA)n Simple_repeat Simple_repeat 2 37 0 2299 198 51 16 chrX 73054069 73054619 -89545311 + L1MB8 LINE L1 5332 5900 -278 1618 236 25 15 chrX 73054638 73054665 -89545265 - MLT2D LTR ERVL -14 383 358 339 113 0 0 chrX 73054665 73054718 -89545212 + (TG)n Simple_repeat Simple_repeat 2 54 0 1618 236 25 15 chrX 73054718 73055103 -89544827 - MLT2D LTR ERVL -39 358 1 1207 190 34 15 chrX 73055104 73055373 -89544557 + L1MB8 LINE L1 5900 6173 -5 270 294 35 0 chrX 73055585 73055670 -89544260 - MIR SINE MIR -5 257 170 199 275 0 72 chrX 73055918 73055987 -89543943 + L2 LINE L2 2990 3053 -219 184 351 39 0 chrX 73056113 73056190 -89543740 - L2 LINE L2 -15 3298 3219 282 360 97 17 chrX 73056346 73056521 -89543409 - L2 LINE L2 -217 3055 2867 409 188 30 30 chrX 73056790 73056891 -89543039 - Charlie7 DNA MER1_type -2510 102 2 197 352 56 14 chrX 73056953 73057095 -89542835 - L2 LINE L2 -664 2650 2503 2881 246 32 40 chrX 73057552 73057932 -89541998 + L1 LINE L1 3266 3647 -2499 2118 150 132 5 chrX 73057932 73058312 -89541618 + MSTA LTR MaLR 1 428 0 2881 246 32 40 chrX 73058312 73059015 -89540915 + L1 LINE L1 3647 4342 -1804 1092 182 25 4 chrX 73059015 73059251 -89540679 + L1MB3 LINE L1 5935 6175 -8 2881 246 32 40 chrX 73059251 73059326 -89540604 + L1 LINE L1 4342 4416 -1730 14805 171 61 9 chrX 73059370 73060505 -89539425 + L1MB3 LINE L1 721 1795 -5770 2296 132 25 6 chrX 73060505 73060862 -89539068 - THE1B LTR MaLR 0 364 1 14805 171 61 9 chrX 73060862 73062564 -89537366 + L1MB3 LINE L1 1795 3707 -3858 2727 223 74 23 chrX 73062565 73063253 -89536677 + L1MA2 LINE L1 20 671 -6894 * 10569 205 30 12 chrX 73063251 73067266 -89532664 + L1MA2 LINE L1 3303 7530 -193 381 144 0 5 chrX 73067268 73067336 -89532594 - Alu SINE Alu -6 296 238 1117 106 22 6 chrX 73067342 73067521 -89532409 + L1MA3 LINE L1 6124 6305 0 3938 219 44 16 chrX 73067523 73069213 -89530717 + L1MB3 LINE L1 5865 7599 -3 28 0 0 0 chrX 73069213 73069241 -89530689 + AT_rich Low_complexity Low_complexity 1 28 0 4062 88 7 0 chrX 73070081 73070647 -89529283 - L1PA13 LINE L1 -8 6155 5586 509 313 93 34 chrX 73070790 73071081 -89528849 + L2 LINE L2 2921 3228 -85 713 152 0 0 chrX 73071312 73071437 -89528493 - L1MA2 LINE L1 0 6304 6180 3620 21 0 0 chrX 73072813 73073231 -89526699 + L1PA3 LINE L1 5737 6154 -1 204 200 0 0 chrX 73073308 73073358 -89526572 + CT-rich Low_complexity Low_complexity 1 50 0 462 126 68 0 chrX 73073377 73073480 -89526450 + T-rich Low_complexity Low_complexity 3 112 0 192 77 0 0 chrX 73073499 73073525 -89526405 + (TTCTCC)n Simple_repeat Simple_repeat 6 31 0 1007 115 0 0 chrX 73073558 73073706 -89526224 + THE1B-int LTR MaLR 1433 1580 0 2006 161 8 35 chrX 73073715 73074081 -89525849 + THE1B LTR MaLR 9 364 0 1736 311 59 44 chrX 73074081 73074788 -89525142 + L1PA15 LINE L1 133 850 -5937 13421 236 20 17 chrX 73074937 73080465 -89519465 + L1PA15 LINE L1 1259 6815 -1 246 384 38 15 chrX 73080621 73080754 -89519176 + L2 LINE L2 3133 3268 -4 2423 170 13 60 chrX 73080981 73081535 -89518395 - L1MA10 LINE L1 -26 6308 5781 3954 174 8 6 chrX 73081544 73082270 -89517660 - L1PB4 LINE L1 -1 6155 5428 454 231 48 19 chrX 73082270 73082374 -89517556 + FLAM_A SINE Alu 15 121 -21 2544 188 45 0 chrX 73082385 73082955 -89516975 - L1MA10 LINE L1 -555 5779 5185 12988 154 25 27 chrX 73082956 73085375 -89514555 - Tigger1 DNA MER2_type 0 2418 5 2301 88 7 0 chrX 73085954 73086248 -89513682 - AluSp SINE Alu -14 299 4 375 317 45 54 chrX 73086265 73086486 -89513444 - MLT1J2 LTR MaLR -47 403 185 268 296 53 61 chrX 73086649 73086781 -89513149 - MIR3 SINE MIR -73 135 5 612 272 18 12 chrX 73086863 73087032 -89512898 - MIR SINE MIR -90 172 3 372 77 0 0 chrX 73087386 73087438 -89512492 + (CAT)n Simple_repeat Simple_repeat 2 53 0 435 158 0 0 chrX 73087507 73087583 -89512347 + Ricksha DNA DNA 9 84 -3162 10254 90 5 0 chrX 73087637 73089858 -89510072 - L1PA7 LINE L1 -6 6148 3928 12823 117 7 24 chrX 73089858 73091956 -89507974 + L1PA7 LINE L1 1871 3933 -2213 1456 166 38 3 chrX 73091956 73092245 -89507685 - Ricksha_a DNA DNA -129 1055 757 23328 185 13 21 chrX 73092245 73093221 -89506709 - L1PA10 LINE L1 -3 6480 5499 207 0 0 0 chrX 73093221 73093244 -89506686 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 23328 185 13 21 chrX 73093244 73098294 -89501636 - L1PA10 LINE L1 -984 5499 489 2554 59 0 0 chrX 73098294 73098598 -89501332 - AluY SINE Alu -7 304 1 23328 185 13 21 chrX 73098598 73099075 -89500855 - L1PA10 LINE L1 -5994 489 10 3828 152 57 22 chrX 73099087 73099822 -89500108 - Ricksha_a DNA DNA -419 762 2 268 301 146 53 chrX 73099836 73100082 -89499848 + L2 LINE L2 2255 2523 -791 1329 219 13 24 chrX 73100194 73100568 -89499362 - L1P LINE L1 -787 5359 4990 194 325 24 24 chrX 73100812 73100895 -89499035 - L2 LINE L2 -339 2933 2851 300 98 115 0 chrX 73100976 73101037 -89498893 + L1MCa LINE L1 1996 2063 -4363 286 184 13 13 chrX 73101082 73101158 -89498772 + L1P5 LINE L1 5759 5834 -317 207 0 0 0 chrX 73101158 73101181 -89498749 + (TA)n Simple_repeat Simple_repeat 1 23 0 2802 107 5 19 chrX 73101188 73101620 -89498310 - L1P5 LINE L1 -365 5786 5361 2008 169 0 0 chrX 73101617 73101971 -89497959 + L1 LINE L1 4675 5028 -1118 * 1371 188 3 93 chrX 73102168 73102492 -89497438 + AluJb SINE Alu 1 295 -17 256 224 22 134 chrX 73102864 73102998 -89496932 + MIR SINE MIR 98 216 -46 241 370 44 30 chrX 73102986 73103189 -89496741 + MIR SINE MIR 20 225 -37 * 495 292 24 20 chrX 73103411 73103603 -89496327 - MIR SINE MIR -1 207 19 502 289 64 6 chrX 73104812 73104968 -89494962 - MIR3 SINE MIR -7 201 37 1494 237 6 0 chrX 73105232 73105553 -89494377 - L1PA16 LINE L1 -20 6146 5824 6051 31 1 0 chrX 73105555 73106267 -89493663 - L1PA3 LINE L1 0 6155 5443 7409 57 0 7 chrX 73106267 73107213 -89492717 + L1P1 LINE L1 592 1530 -4616 11913 35 1 0 chrX 73107214 73108687 -89491243 + L1P1 LINE L1 3957 5430 -725 1742 157 10 0 chrX 73108682 73108988 -89490942 - L1PB4 LINE L1 -316 7259 6951 * 7541 194 26 21 chrX 73108994 73109112 -89490818 - L1PB4 LINE L1 -1149 6416 6300 2099 129 7 0 chrX 73109112 73109422 -89490508 - AluSq SINE Alu -1 312 1 7541 194 26 21 chrX 73109422 73112437 -89487493 - L1PB4 LINE L1 -1265 6300 1336 1655 195 28 33 chrX 73112443 73112807 -89487123 + MSTB2 LTR MaLR 96 457 0 321 301 11 0 chrX 73113207 73113300 -89486630 - L3 LINE CR1 -3 1574 1481 471 288 17 0 chrX 73113322 73113440 -89486490 + L2 LINE L2 3194 3313 0 233 323 84 30 chrX 73113442 73113609 -89486321 - L3 LINE CR1 -105 1472 1297 328 270 112 0 chrX 73113728 73113817 -89486113 + L2 LINE L2 3200 3298 -15 1003 204 4 58 chrX 73114381 73114529 -89485401 + MIR SINE MIR 1 134 -128 1626 162 152 13 chrX 73114529 73114905 -89485025 - MSTA LTR MaLR 0 428 1 1003 204 4 58 chrX 73114905 73114981 -89484949 + MIR SINE MIR 134 213 -49 833 165 12 12 chrX 73115098 73115268 -89484662 + L1MA10 LINE L1 6163 6332 -2 2028 107 0 0 chrX 73115900 73116170 -89483760 + AluSq SINE Alu 1 270 -43 191 235 0 15 chrX 73117048 73117116 -89482814 + CT-rich Low_complexity Low_complexity 1 67 0 756 11 0 0 chrX 73117308 73117395 -89482535 - L1PA3 LINE L1 -1932 4214 4128 9547 36 3 0 chrX 73117395 73119322 -89480608 + L1PA3 LINE L1 4226 6155 0 25 0 0 0 chrX 73119322 73119347 -89480583 + AT_rich Low_complexity Low_complexity 1 25 0 955 338 41 97 chrX 73119833 73120760 -89479170 + L2 LINE L2 2391 3271 -1 23 0 0 0 chrX 73121289 73121312 -89478618 + AT_rich Low_complexity Low_complexity 1 23 0 668 287 35 22 chrX 73121312 73121542 -89478388 - MIR SINE MIR 0 262 30 364 316 59 21 chrX 73122742 73122929 -89477001 - MIR SINE MIR -15 247 54 330 364 0 0 chrX 73122960 73123070 -89476860 - MER81 DNA DNA 0 114 5 260 309 7 108 chrX 73123096 73123235 -89476695 + MIR SINE MIR 86 210 -52 242 56 28 0 chrX 73123345 73123381 -89476549 + (CA)n Simple_repeat Simple_repeat 2 38 0 262 337 47 65 chrX 73123634 73123913 -89476017 + L2 LINE L2 2265 2538 -776 305 332 54 63 chrX 73124086 73124291 -89475639 + L2 LINE L2 2856 3058 -214 11036 186 37 6 chrX 73224319 73226334 -89373596 + L1MA2 LINE L1 486 2563 -5002 890 258 20 4 chrX 73226338 73226582 -89373348 + L1MA2 LINE L1 4075 4322 -3243 7167 204 35 7 chrX 73226591 73228263 -89371667 + L1MA2 LINE L1 4525 6243 -1322 1227 142 18 0 chrX 73228273 73228492 -89371438 - L1 LINE L1 -1662 4484 4262 1131 144 37 9 chrX 73228490 73228705 -89371225 + L1MA1 LINE L1 5935 6155 -147 * 5819 204 12 2 chrX 73228702 73229937 -89369993 - L1PB2 LINE L1 -1449 4697 3450 5063 169 37 13 chrX 73229937 73231552 -89368378 + L1PB2 LINE L1 4685 6148 -3 5438 156 14 13 chrX 73231560 73232018 -89367912 + L1MA2 LINE L1 6226 6682 -1041 1804 149 49 30 chrX 73232018 73232386 -89367544 + THE1C LTR MaLR 1 375 0 5438 156 14 13 chrX 73232386 73233233 -89366697 + L1MA2 LINE L1 6682 7544 -179 7632 204 39 37 chrX 73233247 73236112 -89363818 + L1PA10 LINE L1 1 2874 -3587 14873 162 34 13 chrX 73236115 73239626 -89360304 + L1PA10 LINE L1 2920 6479 -4 922 115 98 6 chrX 73239631 73239805 -89360125 + L1MA3 LINE L1 6115 6304 -1 25 75 0 0 chrX 73240031 73240084 -89359846 + AT_rich Low_complexity Low_complexity 1 53 0 23 78 0 0 chrX 73240243 73240294 -89359636 + AT_rich Low_complexity Low_complexity 1 51 0 850 220 25 0 chrX 73240330 73240530 -89359400 + L1MA4 LINE L1 5735 5939 -361 23 0 0 0 chrX 73240806 73240829 -89359101 + AT_rich Low_complexity Low_complexity 1 23 0 503 128 12 0 chrX 73241686 73241772 -89358158 + GA-rich Low_complexity Low_complexity 2 88 0 1495 209 10 23 chrX 73241917 73242219 -89357711 + Charlie1a DNA MER1_type 1 298 -1157 190 333 0 0 chrX 73242400 73242466 -89357464 + MIR SINE MIR 123 188 -74 532 239 39 19 chrX 73242545 73242700 -89357230 - MIR SINE MIR -73 189 32 529 167 0 0 chrX 73243057 73243141 -89356789 - HSMAR2 DNA Mariner -454 848 765 2481 118 0 11 chrX 73243177 73243543 -89356387 - L1PB1 LINE L1 0 6151 5790 366 216 6 31 chrX 73243573 73243735 -89356195 + (TA)n Simple_repeat Simple_repeat 1 158 0 3098 118 0 2 chrX 73243735 73244193 -89355737 - L1PB1 LINE L1 -360 5791 5335 * 31654 44 4 1 chrX 73244189 73248129 -89351801 - L1P LINE L1 -1534 4612 659 540 294 81 42 chrX 73248147 73248456 -89351474 + MLT1I LTR MaLR 80 400 -9 197 269 21 0 chrX 73248839 73248932 -89350998 + GA-rich Low_complexity Low_complexity 5 99 0 233 246 0 0 chrX 73249080 73249137 -89350793 + MLT1K LTR MaLR 511 567 -21 571 314 0 32 chrX 73249385 73249570 -89350360 - L2 LINE L2 -4 3309 3131 1578 229 64 11 chrX 73249888 73250343 -89349587 + L1ME1 LINE L1 5540 6018 -148 198 0 0 0 chrX 73250408 73250430 -89349500 + (TG)n Simple_repeat Simple_repeat 2 23 0 222 211 26 0 chrX 73251013 73251051 -89348879 + L3 LINE CR1 1513 1551 -26 196 286 20 0 chrX 73251017 73251066 -89348864 + MIR3 SINE MIR 144 193 -15 * 1846 360 27 8 chrX 73251490 73252198 -89347732 + L1PA16 LINE L1 1 721 -6066 13710 263 25 9 chrX 73252422 73257106 -89342824 + L1PA16 LINE L1 1324 6100 -717 2169 131 22 27 chrX 73257106 73257472 -89342458 + THE1B LTR MaLR 1 364 0 11068 110 16 2 chrX 73257472 73259030 -89340900 + THE1B-int LTR MaLR 1 1580 0 1352 143 26 49 chrX 73259030 73259295 -89340635 + THE1B LTR MaLR 1 259 -105 3535 142 10 95 chrX 73259326 73260107 -89339823 + L1PA16 LINE L1 6100 6814 -3 2235 23 0 0 chrX 73261532 73261792 -89338138 - L1PA5 LINE L1 -9 6145 5886 395 41 0 0 chrX 73261792 73261841 -89338089 + L1PA5 LINE L1 5847 5895 -259 2094 130 0 3 chrX 73261865 73262166 -89337764 + AluSx SINE Alu 1 300 -12 453 273 15 15 chrX 73262353 73262485 -89337445 - MIR3 SINE MIR -7 201 70 235 216 122 27 chrX 73263136 73263210 -89336720 + MIR3 SINE MIR 113 193 -15 * 675 301 102 44 chrX 73263190 73263532 -89336398 + L2 LINE L2 2952 3313 0 18331 205 21 9 chrX 73266239 73266778 -89333152 - ERVL-C1 LTR ERVL -743 5021 4490 2223 121 21 19 chrX 73266778 73267157 -89332773 + L1PB3 LINE L1 5775 6154 0 18331 205 21 9 chrX 73267157 73270247 -89329683 - ERVL-C1 LTR ERVL -1274 4490 1278 2892 263 99 13 chrX 73270248 73271245 -89328685 - ERVL-C1 LTR ERVL -4666 1098 1 257 167 0 0 chrX 73271247 73271289 -89328641 - MLT2C1 LTR ERVL -2 395 354 5827 92 4 0 chrX 73271310 73272113 -89327817 - L1PA14 LINE L1 -6 6155 5350 193 400 9 0 chrX 73272163 73272268 -89327662 + L2 LINE L2 2554 2659 -655 6150 204 2 5 chrX 73272300 73273554 -89326376 - L1P LINE L1 -845 5301 4051 1046 200 13 53 chrX 73273556 73273711 -89326219 - MLT2C2 LTR ERVL -57 407 262 2422 62 0 7 chrX 73273711 73274016 -89325914 - AluY SINE Alu -7 304 2 1046 200 13 53 chrX 73274016 73274085 -89325845 - MLT2C2 LTR ERVL -202 262 192 * 1477 166 191 16 chrX 73274083 73274403 -89325527 + MSTA LTR MaLR 53 428 0 222 204 0 0 chrX 73274461 73274505 -89325425 + CT-rich Low_complexity Low_complexity 1 44 0 704 339 148 20 chrX 73275065 73275667 -89324263 + L2 LINE L2 1654 2332 -982 231 371 9 0 chrX 73275803 73275908 -89324022 + L2 LINE L2 2554 2659 -655 776 254 91 17 chrX 73275924 73276156 -89323774 + MIR SINE MIR 13 261 -1 181 318 23 23 chrX 73276267 73276355 -89323575 + L2 LINE L2 2935 3022 -250 272 321 179 8 chrX 73276690 73276824 -89323106 + L2 LINE L2 3116 3272 0 264 300 0 67 chrX 73276853 73276943 -89322987 - L2 LINE L2 -2 3270 3187 2179 96 0 10 chrX 73277372 73277664 -89322266 + AluSg SINE Alu 3 291 -19 300 325 154 0 chrX 73278999 73279116 -89320814 - L2 LINE L2 0 3272 3138 658 192 0 0 chrX 73280215 73280345 -89319585 + L1MA10 LINE L1 6202 6331 -3 222 176 0 0 chrX 73281622 73281673 -89318257 + GA-rich Low_complexity Low_complexity 5 55 0 2394 40 33 0 chrX 73283279 73283581 -89316349 + LTR2B LTR ERV1 179 490 0 243 333 13 47 chrX 73283585 73283735 -89316195 - L3 LINE CR1 -1004 573 429 16538 155 37 7 chrX 73283981 73285542 -89314388 - L1PB1 LINE L1 -190 6677 5165 276 30 0 0 chrX 73285542 73285575 -89314355 + (CATTT)n Simple_repeat Simple_repeat 3 35 0 16538 155 37 7 chrX 73285575 73290491 -89309439 - L1PB1 LINE L1 -1702 5165 3 17904 193 27 10 chrX 73290535 73295191 -89304739 - L1 LINE L1 -1544 6021 1240 2213 116 7 3 chrX 73295191 73295493 -89304437 - AluSx SINE Alu -9 303 1 17904 193 27 10 chrX 73295493 73296715 -89303215 - L1 LINE L1 -6325 1240 40 440 331 0 0 chrX 73296724 73296845 -89303085 + L1PA13 LINE L1 1382 1502 -5337 437 242 34 7 chrX 73296842 73296991 -89302939 + L1PA13 LINE L1 2310 2462 -4387 * 336 221 39 13 chrX 73297107 73297184 -89302746 + MIR SINE MIR 27 105 -157 193 247 47 24 chrX 73297285 73297370 -89302560 + MIR SINE MIR 146 232 -30 601 243 116 6 chrX 73297767 73297948 -89301982 + MIR SINE MIR 35 235 -27 998 265 65 3 chrX 73299223 73299559 -89300371 - L1ME2 LINE L1 -16 6148 5792 431 311 163 0 chrX 73299670 73299879 -89300051 + MIR SINE MIR 18 260 -2 1611 181 13 0 chrX 73300955 73301253 -89298677 - L1PB4 LINE L1 0 6156 5855 2096 116 35 0 chrX 73302251 73302535 -89297395 - AluSc SINE Alu -15 294 1 1775 208 68 11 chrX 73303379 73303821 -89296109 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chrX 73304322 73304343 -89295587 + AT_rich Low_complexity Low_complexity 1 21 0 21672 36 1 1 chrX 73305636 73309073 -89290857 + L1PA4 LINE L1 2718 6153 -2 3692 133 41 12 chrX 73309073 73309707 -89290223 - L1MA5A LINE L1 -19 6278 5620 415 106 202 21 chrX 73309710 73309804 -89290126 - L1PA13 LINE L1 -1 6162 6052 4290 133 50 48 chrX 73310156 73310940 -89288990 + LTR1 LTR ERV1 1 785 0 312 290 16 77 chrX 73311094 73311277 -89288653 - MIR SINE MIR 0 262 91 2432 114 17 14 chrX 73312779 73313138 -89286792 + THE1B LTR MaLR 1 360 -4 10611 118 27 2 chrX 73313145 73314683 -89285247 + THE1B-int LTR MaLR 4 1580 0 276 54 0 0 chrX 73314683 73314720 -89285210 + THE1B LTR MaLR 1 37 -391 824 344 89 12 chrX 73314970 73315488 -89284442 - L2 LINE L2 -822 2492 1935 364 230 101 61 chrX 73315498 73315646 -89284284 + L1ME4a LINE L1 5734 5887 -234 241 215 0 31 chrX 73315674 73315739 -89284191 - MIR SINE MIR 0 262 200 1911 151 3 10 chrX 73315776 73316081 -89283849 - AluSx SINE Alu -9 303 1 330 87 0 0 chrX 73316172 73316218 -89283712 + (TA)n Simple_repeat Simple_repeat 1 46 0 3277 156 15 26 chrX 73316218 73316524 -89283406 - L1MB4 LINE L1 -28 6152 5844 2257 129 0 0 chrX 73316524 73316834 -89283096 + AluSx SINE Alu 1 310 -2 3277 156 15 26 chrX 73316834 73317176 -89282754 - L1MB4 LINE L1 -336 5844 5511 26 30 0 0 chrX 73317185 73317218 -89282712 + AT_rich Low_complexity Low_complexity 1 33 0 2409 155 54 2 chrX 73317379 73317805 -89282125 + MER83 LTR ERV1 1 448 0 7577 82 13 8 chrX 73317839 73319205 -89280725 + L1P3 LINE L1 4228 5599 -555 2891 248 18 16 chrX 73369205 73369975 -89229955 - L1P3 LINE L1 -5101 774 3 637 219 22 46 chrX 73369971 73370342 -89229588 - L1MCa LINE L1 -3893 2714 2308 * 3042 160 7 96 chrX 73370363 73371038 -89228892 - SVA Other Other -339 1047 433 5626 94 31 20 chrX 73371051 73372049 -89227881 - SVA Other Other -520 866 1 407 323 68 0 chrX 73372050 73372183 -89227747 + L3 LINE CR1 1433 1574 -3 21 36 0 0 chrX 73374202 73374230 -89225700 + AT_rich Low_complexity Low_complexity 1 28 0 192 161 36 36 chrX 73374569 73374625 -89225305 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 311 227 41 23 chrX 73374626 73374798 -89225132 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 1693 254 32 70 chrX 73374996 73375712 -89224218 + HUERS-P1 LTR ERV1 5575 6263 0 834 200 27 96 chrX 73375715 73376043 -89223887 + LTR8A LTR ERV1 1 333 -394 503 174 0 10 chrX 73376043 73376141 -89223789 + MER4A LTR ERV1 2 98 -566 1759 136 3 30 chrX 73376141 73376494 -89223436 + MER4A LTR ERV1 263 664 0 1053 221 106 22 chrX 73376494 73376813 -89223117 + LTR8A LTR ERV1 329 674 -53 53 40 0 0 chrX 73376895 73376969 -89222961 + AT_rich Low_complexity Low_complexity 1 74 0 413 271 55 50 chrX 73377202 73377383 -89222547 + MIR SINE MIR 16 197 -65 1131 170 0 11 chrX 73378542 73378724 -89221206 - AluJb SINE Alu -21 291 112 4914 231 71 41 chrX 73379034 73382679 -89217251 + L1MB7 LINE L1 16 3827 -2817 29597 38 0 0 chrX 73382681 73387109 -89212821 + L1PA4 LINE L1 1726 6153 -2 6762 224 47 10 chrX 73387109 73389299 -89210631 + L1MB7 LINE L1 3823 6101 -581 1739 116 55 7 chrX 73389299 73389589 -89210341 + L1MB7 LINE L1 6372 6677 -5 778 197 7 14 chrX 73389599 73389746 -89210184 + LTR8 LTR ERV1 546 691 0 850 275 88 3 chrX 73389746 73390035 -89209895 + HUERS-P1 LTR ERV1 1 387 -5876 2259 219 31 59 chrX 73390134 73390740 -89209190 + HUERS-P1 LTR ERV1 609 1197 -5066 5374 0 0 0 chrX 73390740 73391328 -89208602 + L1HS LINE L1 5534 6121 -34 8052 196 108 99 chrX 73391334 73392535 -89207395 + LTR49-int LTR ERV1 1052 2242 -3704 4392 111 4 30 chrX 73392535 73393213 -89206717 - MER4A LTR ERV1 0 664 4 8052 196 108 99 chrX 73393213 73395182 -89204748 + LTR49-int LTR ERV1 2242 4248 -1698 1013 168 10 14 chrX 73395283 73395491 -89204439 + LTR49-int LTR ERV1 5584 5790 -541 763 179 121 58 chrX 73395514 73395771 -89204159 + LTR49-int LTR ERV1 5916 6188 -143 390 178 44 0 chrX 73395779 73395869 -89204061 - MER53 DNA DNA -95 94 1 609 244 67 44 chrX 73395959 73396136 -89203794 - MIR SINE MIR -46 216 36 483 247 149 0 chrX 73396136 73396290 -89203640 - MER5A DNA MER1_type 0 189 13 355 295 39 56 chrX 73396623 73396857 -89203073 + L2 LINE L2 2712 2941 -373 233 259 0 19 chrX 73397355 73397409 -89202521 - L2 LINE L2 -3 3269 3217 559 175 5 175 chrX 73398070 73398211 -89201719 + MLT2C1 LTR ERVL 220 315 -82 1781 129 201 28 chrX 73398211 73398574 -89201356 + MSTA LTR MaLR 3 428 0 559 175 5 175 chrX 73398574 73398643 -89201287 + MLT2C1 LTR ERVL 315 394 -3 380 295 192 72 chrX 73398687 73399104 -89200826 + L2 LINE L2 2804 3270 -2 820 230 27 0 chrX 73399248 73399435 -89200495 + MER3 DNA MER1_type 1 192 -17 258 32 0 0 chrX 73399518 73399549 -89200381 + (CA)n Simple_repeat Simple_repeat 1 31 0 557 324 23 6 chrX 73400432 73400605 -89199325 - MIR3 SINE MIR -17 191 16 473 291 40 40 chrX 73401455 73401630 -89198300 - L3 LINE CR1 -1 1576 1402 1055 83 0 0 chrX 73401639 73401771 -89198159 - AluY SINE Alu -179 132 1 1024 295 27 112 chrX 73401771 73402360 -89197570 - L3 LINE CR1 -164 1413 875 2355 158 13 17 chrX 73402360 73403294 -89196636 + L1PB4 LINE L1 4855 5791 -365 270 0 0 0 chrX 73403294 73403324 -89196606 + (CA)n Simple_repeat Simple_repeat 2 31 0 2355 158 13 17 chrX 73403324 73403344 -89196586 + L1PB4 LINE L1 5791 5810 -346 1415 185 62 0 chrX 73403344 73403619 -89196311 + L1PB4 LINE L1 5861 6153 -3 2355 158 13 17 chrX 73403619 73403644 -89196286 + L1PB4 LINE L1 5810 6153 -3 396 359 63 10 chrX 73403739 73403945 -89195985 - L3 LINE CR1 -725 852 636 227 167 0 0 chrX 73403946 73403982 -89195948 - U6 snRNA snRNA -71 36 1 4972 171 20 7 chrX 73404094 73405042 -89194888 - L1MA6 LINE L1 -23 6277 5318 5425 177 21 7 chrX 73405046 73406395 -89193535 - L1MA4 LINE L1 -5 6477 5107 * 9124 206 61 12 chrX 73406393 73408671 -89191259 - L1MA4 LINE L1 -1477 4851 2685 2369 75 7 0 chrX 73408671 73408976 -89190954 - AluY SINE Alu -4 307 1 9124 206 61 12 chrX 73408976 73411136 -89188794 - L1MA4 LINE L1 -3643 2685 180 5450 47 0 0 chrX 73411151 73411814 -89188116 + L1PA7 LINE L1 5486 6148 -6 8438 217 48 23 chrX 73411848 73415016 -89184914 - L1MB2 LINE L1 -11 7181 3936 289 193 50 40 chrX 73415286 73415394 -89184536 - L1MB2 LINE L1 -6082 1016 2 1607 189 3 18 chrX 73416150 73416435 -89183495 + AluJb SINE Alu 3 283 -29 495 33 0 0 chrX 73416565 73416626 -89183304 + (GA)n Simple_repeat Simple_repeat 2 62 0 33694 36 1 0 chrX 73416922 73421839 -89178091 - L1PA2 LINE L1 0 6155 1232 258 250 23 57 chrX 73422939 73423027 -89176903 + MIR SINE MIR 88 172 -90 21 36 0 0 chrX 73423039 73423067 -89176863 + AT_rich Low_complexity Low_complexity 1 28 0 475 285 62 33 chrX 73423355 73423597 -89176333 + L1MC4a LINE L1 5716 5964 -1844 24 0 0 0 chrX 73423777 73423801 -89176129 + AT_rich Low_complexity Low_complexity 1 24 0 22074 184 29 26 chrX 73423801 73427553 -89172377 - L1PA11 LINE L1 -199 7413 3672 7871 11 1 0 chrX 73427553 73428647 -89171283 + L1PA2 LINE L1 5058 6152 -3 22074 184 29 26 chrX 73428647 73428965 -89170965 - L1PA11 LINE L1 -3940 3672 3356 2183 115 0 0 chrX 73428965 73429260 -89170670 - AluSx SINE Alu -17 295 1 2261 110 0 0 chrX 73429261 73429560 -89170370 - AluSx SINE Alu -13 299 1 22074 184 29 26 chrX 73429560 73431762 -89168168 - L1PA11 LINE L1 -4255 3357 2 11455 188 26 52 chrX 73431841 73435365 -89164565 - L1PA15 LINE L1 -3 6162 2762 2041 133 3 3 chrX 73435365 73435665 -89164265 - AluSg SINE Alu -10 300 1 11455 188 26 52 chrX 73435665 73436236 -89163694 - L1PA15 LINE L1 -3403 2762 2178 1075 202 64 55 chrX 73436294 73436730 -89163200 - L1 LINE L1 -1391 4755 4316 10813 176 27 9 chrX 73436755 73440019 -89159911 - L1MA2 LINE L1 -22 7701 4374 1959 143 41 3 chrX 73440038 73440381 -89159549 - L1MA1 LINE L1 0 6302 5947 3378 119 21 3 chrX 73440387 73441009 -89158921 - L1MA1 LINE L1 -532 5770 5137 1756 176 6 56 chrX 73441001 73441525 -89158405 - L1M1 LINE L1 -743 5403 4945 * 1728 154 15 39 chrX 73441524 73441780 -89158150 - L1MA1 LINE L1 -1096 5050 4789 * 1881 171 122 10 chrX 73441780 73442165 -89157765 + MSTA LTR MaLR 1 428 0 9468 134 15 39 chrX 73442167 73443779 -89156151 + MSTA-int LTR MaLR 3 1576 -4 2082 153 119 10 chrX 73443783 73444169 -89155761 + MSTA LTR MaLR 1 428 0 1728 154 15 39 chrX 73444169 73444241 -89155689 - L1MA1 LINE L1 -1361 4785 4722 * 18768 186 30 14 chrX 73444239 73448458 -89151472 - L1MA2 LINE L1 -3175 4390 95 243 0 0 0 chrX 73448458 73448485 -89151445 + (TG)n Simple_repeat Simple_repeat 2 28 0 18768 186 30 14 chrX 73448485 73448565 -89151365 - L1MA2 LINE L1 -7470 95 18 4319 198 11 9 chrX 73448754 73449682 -89150248 - L1PB1 LINE L1 -2024 4122 3193 * 5891 154 14 10 chrX 73449678 73451719 -89148211 + L1PB1 LINE L1 4133 6174 0 249 158 53 18 chrX 73451805 73451862 -89148068 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 386 336 55 42 chrX 73451865 73452103 -89147827 + L2 LINE L2 2939 3179 -93 2361 65 31 0 chrX 73453489 73453781 -89146149 + AluY SINE Alu 1 301 -10 2431 46 0 33 chrX 73453786 73454092 -89145838 + AluY SINE Alu 3 298 -13 329 250 80 0 chrX 73454800 73454900 -89145030 + L1ME LINE L1 5694 5801 -320 505 308 35 4 chrX 73454927 73455154 -89144776 + L1MC4a LINE L1 5701 5934 -1874 24 67 0 0 chrX 73455160 73455205 -89144725 + AT_rich Low_complexity Low_complexity 1 45 0 31 26 0 0 chrX 73455357 73455395 -89144535 + AT_rich Low_complexity Low_complexity 1 38 0 703 205 11 13 chrX 73455645 73455819 -89144111 + LTR47A LTR ERVL 261 446 -6 1455 155 11 76 chrX 73455917 73456194 -89143736 - L1M1 LINE L1 -5486 2079 1821 274 330 61 53 chrX 73456325 73456589 -89143341 - HERVL18 LTR ERVL -4191 1856 1591 2140 139 13 5 chrX 73456741 73457121 -89142809 + L1M1 LINE L1 2069 2451 -5114 1149 231 81 29 chrX 73457119 73457538 -89142392 + L1ME1 LINE L1 5722 6162 -4 * 23 86 0 0 chrX 73457538 73457596 -89142334 + AT_rich Low_complexity Low_complexity 1 58 0 345 125 0 0 chrX 73458027 73458083 -89141847 + (CA)n Simple_repeat Simple_repeat 2 57 0 16729 117 7 3 chrX 73458534 73461116 -89138814 + L1M1 LINE L1 2714 5304 -2261 9959 99 16 1 chrX 73461119 73463320 -89136610 + L1PA7 LINE L1 3942 6150 -4 325 341 67 56 chrX 73463875 73464054 -89135876 + MIR3 SINE MIR 19 199 -9 754 196 108 7 chrX 73464833 73464981 -89134949 - Tigger3(Golem) DNA MER2_type 0 3029 2867 740 88 0 0 chrX 73464982 73465084 -89134846 + L1PB1 LINE L1 6047 6148 -3 839 274 31 9 chrX 73465632 73465855 -89134075 + MIR SINE MIR 30 257 -5 31 58 0 0 chrX 73466229 73466281 -89133649 + AT_rich Low_complexity Low_complexity 1 52 0 987 138 53 21 chrX 73466587 73466775 -89133155 + L1PA16 LINE L1 5973 6166 0 411 331 83 0 chrX 73466967 73467124 -89132806 - L2 LINE L2 -1 3271 3102 196 193 53 53 chrX 73467911 73467968 -89131962 - L2 LINE L2 -1 3312 3256 5661 124 11 11 chrX 73467996 73469634 -89130296 - L1PA14 LINE L1 0 6161 4529 5694 135 62 13 chrX 73469684 73471165 -89128765 - L1PA11 LINE L1 0 6174 4606 * 8252 199 38 16 chrX 73471162 73472971 -89126959 - L1PA14 LINE L1 -1794 4352 2504 * 13928 166 25 15 chrX 73472969 73474491 -89125439 + L1 LINE L1 765 2269 -5296 1737 167 0 23 chrX 73474491 73474791 -89125139 + AluJb SINE Alu 1 293 -19 13928 166 25 15 chrX 73474791 73475021 -89124909 + L1 LINE L1 2269 2495 -5070 2076 118 24 0 chrX 73475021 73475318 -89124612 + AluSp SINE Alu 3 306 -7 13928 166 25 15 chrX 73475318 73476074 -89123856 + L1 LINE L1 2495 3301 -4264 2345 198 40 4 chrX 73476075 73476438 -89123492 + L1 LINE L1 4787 5176 -2389 243 0 0 0 chrX 73476438 73476465 -89123465 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2345 198 40 4 chrX 73476465 73476631 -89123299 + L1 LINE L1 5176 5335 -2230 * 5611 115 58 4 chrX 73476628 73477543 -89122387 + L1MA2 LINE L1 5341 6304 0 298 326 64 32 chrX 73477616 73477834 -89122096 - L2 LINE L2 0 3313 3089 4067 239 109 38 chrX 73478033 73479425 -89120505 + L1M4 LINE L1 78 1369 -5277 1808 82 0 9 chrX 73479425 73479656 -89120274 + AluY SINE Alu 69 297 -14 4067 239 109 38 chrX 73479656 73480744 -89119186 + L1M4 LINE L1 1369 2760 -3886 267 49 0 0 chrX 73480733 73480774 -89119156 + L1MA3 LINE L1 6263 6303 -2 * 32 43 0 0 chrX 73480774 73480820 -89119110 + AT_rich Low_complexity Low_complexity 1 46 0 229 216 0 40 chrX 73480825 73480899 -89119031 + L1M4 LINE L1 2752 2822 -3822 * 1331 212 10 7 chrX 73480891 73481198 -89118732 + L1 LINE L1 6233 6540 -1025 3455 106 43 10 chrX 73481199 73481707 -89118223 + LTR17 LTR ERV1 256 780 0 5065 76 0 17 chrX 73481707 73482403 -89117527 + HERV17 LTR ERV1 1 684 -7942 8598 77 19 3 chrX 73482570 73483759 -89116171 + HERV17 LTR ERV1 798 2005 -6621 * 10615 55 4 0 chrX 73483753 73485111 -89114819 + HERV17 LTR ERV1 2430 3792 -4834 24072 98 11 1 chrX 73485116 73488910 -89111020 - L1P3 LINE L1 -677 5477 1650 3031 241 31 34 chrX 73488918 73489693 -89110237 + L1M4 LINE L1 4703 5476 -1168 2253 109 0 0 chrX 73489693 73489978 -89109952 - AluSc SINE Alu -24 285 1 3031 241 31 34 chrX 73489978 73490330 -89109600 + L1M4 LINE L1 5476 5827 -817 1611 218 0 14 chrX 73490339 73490752 -89109178 + L1M4 LINE L1 3789 4195 -2449 16600 196 13 15 chrX 73490760 73495958 -89103972 + L1PA15 LINE L1 1677 6860 -8 739 164 23 18 chrX 73495977 73496148 -89103782 + L1M4 LINE L1 4731 4902 -1742 567 263 123 35 chrX 73497446 73497674 -89102256 - MIR SINE MIR -11 251 4 371 248 62 73 chrX 73498030 73498229 -89101701 - MIR SINE MIR -42 220 26 311 157 20 0 chrX 73498816 73498867 -89101063 + MIR3 SINE MIR 109 160 -48 325 233 27 14 chrX 73498919 73498992 -89100938 + MIR3 SINE MIR 123 196 -12 1575 148 4 4 chrX 73499308 73499572 -89100358 - L1PA15 LINE L1 0 6165 5902 492 191 30 95 chrX 73500288 73500456 -89099474 + MER3 DNA MER1_type 35 191 -18 2217 173 12 2 chrX 73500788 73501187 -89098743 - MER57A LTR ERV1 0 403 1 243 188 62 0 chrX 73501345 73501393 -89098537 + MIR3 SINE MIR 110 160 -48 188 259 294 0 chrX 73501391 73501476 -89098454 - L2 LINE L2 0 3272 3163 * 1720 186 54 86 chrX 73502093 73502685 -89097245 - LTR5 LTR ERVK 0 969 397 527 146 48 10 chrX 73502686 73502789 -89097141 - LTR5 LTR ERVK -862 107 1 314 260 55 96 chrX 73504843 73504989 -89094941 - MIR SINE MIR -54 208 69 22 35 0 0 chrX 73505346 73505375 -89094555 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chrX 73506798 73506821 -89093109 + (TG)n Simple_repeat Simple_repeat 2 24 0 2268 85 0 0 chrX 73507051 73507356 -89092574 + AluSc SINE Alu 1 305 0 185 294 231 31 chrX 73509404 73509564 -89090366 - L2 LINE L2 -4 3268 3077 2233 104 3 0 chrX 73510011 73510300 -89089630 - AluSp SINE Alu -15 298 9 324 0 0 0 chrX 73510542 73510578 -89089352 + (CA)n Simple_repeat Simple_repeat 2 37 0 8583 36 7 0 chrX 73510786 73512601 -89087329 + L1PA4 LINE L1 4336 6155 0 185 343 14 14 chrX 73512655 73512725 -89087205 - L2 LINE L2 -220 3052 2983 365 342 88 31 chrX 73512863 73513123 -89086807 - L2 LINE L2 -791 2523 2249 4119 85 19 0 chrX 73513166 73513729 -89086201 - L1PA12 LINE L1 -2 6166 5593 5724 148 10 2 chrX 73513733 73515081 -89084849 - L1PB2 LINE L1 -3 6148 4790 2275 232 0 4 chrX 73515071 73515566 -89084364 - L1PBa LINE L1 -6031 832 340 * 8628 216 30 5 chrX 73515559 73517366 -89082564 - L1M1 LINE L1 -5705 1860 9 266 348 194 22 chrX 73517485 73518155 -89081775 + L2 LINE L2 189 973 -2341 4971 185 24 5 chrX 73518230 73520240 -89079690 - L1PA16 LINE L1 -1 6165 4126 492 317 89 46 chrX 73520249 73520596 -89079334 + L2 LINE L2 1062 1423 -1891 288 143 0 0 chrX 73520800 73520856 -89079074 + (CA)n Simple_repeat Simple_repeat 1 56 0 237 375 146 31 chrX 73520860 73521217 -89078713 + L2 LINE L2 2846 3243 -29 205 360 54 27 chrX 73521531 73521642 -89078288 - L2 LINE L2 -545 2769 2656 386 260 187 0 chrX 73521860 73521983 -89077947 + MIR3 SINE MIR 52 197 -11 186 255 0 0 chrX 73522869 73522916 -89077014 - MIR SINE MIR -10 252 206 195 129 0 0 chrX 73523401 73523432 -89076498 + (CAATT)n Simple_repeat Simple_repeat 5 35 0 1852 207 132 70 chrX 73524019 73524633 -89075297 + MLT1E1 LTR MaLR 3 654 0 322 376 56 8 chrX 73524743 73524977 -89074953 + L2 LINE L2 1864 2108 -1206 * 577 213 47 33 chrX 73524956 73525106 -89074824 - MIR SINE MIR -110 152 1 2120 138 0 0 chrX 73525251 73525548 -89074382 + AluSx SINE Alu 1 297 -15 1711 85 19 26 chrX 73525548 73525818 -89074112 - L1MA1 LINE L1 -331 5971 5704 1464 174 55 6 chrX 73525817 73526128 -89073802 + L1MB1 LINE L1 5741 6066 -102 * 4931 77 20 1 chrX 73526678 73527326 -89072604 - PABL_A LTR ERV1 0 660 1 478 321 41 39 chrX 73527787 73527991 -89071939 - MIR3 SINE MIR 0 208 1 6446 210 13 14 chrX 73528200 73529568 -89070362 + L1MA2 LINE L1 17 1383 -6182 2422 115 28 14 chrX 73529569 73529926 -89070004 + THE1B LTR MaLR 1 362 -2 6774 97 4 0 chrX 73529929 73530884 -89069046 + THE1B-int LTR MaLR 1 959 -621 1332 131 0 0 chrX 73530884 73531083 -89068847 - THE1B LTR MaLR -165 199 1 15374 168 16 8 chrX 73531083 73536593 -89063337 + L1MA2 LINE L1 1769 7328 -395 38015 86 5 6 chrX 73536601 73542750 -89057180 + L1PA6 LINE L1 11 6154 0 2619 107 25 2 chrX 73542750 73543146 -89056784 + L1MA2 LINE L1 7313 7723 0 870 172 6 44 chrX 73543499 73543679 -89056251 - AluJ SINE Alu -20 292 120 1288 227 11 55 chrX 73543757 73544123 -89055807 - L1ME1 LINE L1 -7 6159 5810 1299 227 51 6 chrX 73544134 73544465 -89055465 - L1MB8 LINE L1 -9 6169 5824 * 1725 224 78 22 chrX 73544463 73544971 -89054959 + L1ME LINE L1 5061 5621 -545 1973 45 28 0 chrX 73544971 73545218 -89054712 + L1PA3 LINE L1 5902 6155 0 1725 224 78 22 chrX 73545218 73545421 -89054509 + L1ME LINE L1 5621 5811 -355 572 178 28 0 chrX 73545422 73545529 -89054401 - AluJ SINE Alu -179 133 24 194 77 0 0 chrX 73545913 73545939 -89053991 - L2 LINE L2 -22 3291 3266 2352 34 41 7 chrX 73546272 73546565 -89053365 - AluY SINE Alu -8 303 1 249 167 0 0 chrX 73546903 73546957 -89052973 + T-rich Low_complexity Low_complexity 1 54 0 1996 110 10 33 chrX 73547015 73547316 -89052614 + AluSx SINE Alu 1 294 -18 181 348 116 0 chrX 73547690 73547759 -89052171 - L3b LINE CR1 -50 1533 1457 182 273 0 0 chrX 73548466 73548510 -89051420 + L2 LINE L2 3143 3186 -86 219 174 87 0 chrX 73548631 73548677 -89051253 + MIR3 SINE MIR 132 181 -27 787 194 0 0 chrX 73548968 73549097 -89050833 - FLAM_A SINE Alu -4 129 1 202 197 45 91 chrX 73549303 73549369 -89050561 - L2 LINE L2 -8 3264 3202 184 314 64 36 chrX 73549488 73549628 -89050302 - L2 LINE L2 -221 3051 2908 1007 149 17 142 chrX 73549961 73550073 -89049857 + L1MA9 LINE L1 6047 6171 -141 4704 104 0 60 chrX 73550073 73550144 -89049786 + L1PA13 LINE L1 5426 5500 -663 2095 102 7 26 chrX 73550144 73550447 -89049483 + AluSx SINE Alu 1 297 -15 4704 104 0 60 chrX 73550447 73551160 -89048770 + L1PA13 LINE L1 5500 6163 0 1007 149 17 142 chrX 73551160 73551349 -89048581 + L1MA9 LINE L1 6171 6310 -2 5386 165 22 7 chrX 73551619 73553358 -89046572 - L1PA16 LINE L1 -26 6791 5031 3951 262 19 21 chrX 73553370 73555011 -89044919 - L1PA16 LINE L1 -4588 2199 1 7431 35 1 19 chrX 73555973 73557484 -89042446 - L1PA4 LINE L1 0 6155 4659 24 32 0 0 chrX 73559053 73559084 -89040846 + AT_rich Low_complexity Low_complexity 1 31 0 610 286 37 46 chrX 73560540 73560757 -89039173 + MIR SINE MIR 2 216 -46 728 282 53 8 chrX 73561185 73561430 -89038500 - MIR SINE MIR -2 260 5 765 193 0 0 chrX 73561452 73561597 -89038333 + L1MB1 LINE L1 6023 6167 -1 2108 118 0 3 chrX 73561797 73562084 -89037846 + AluSg SINE Alu 1 286 -24 517 80 93 3 chrX 73562084 73562409 -89037521 + (TA)n Simple_repeat Simple_repeat 1 354 0 510 47 82 24 chrX 73562423 73562593 -89037337 + (TA)n Simple_repeat Simple_repeat 1 180 0 39 22 0 0 chrX 73562593 73562639 -89037291 + AT_rich Low_complexity Low_complexity 1 46 0 600 69 84 6 chrX 73562646 73562989 -89036941 + (TA)n Simple_repeat Simple_repeat 1 369 0 672 55 82 18 chrX 73563006 73563335 -89036595 + (TA)n Simple_repeat Simple_repeat 1 350 0 31 26 0 0 chrX 73614025 73614063 -88985867 + AT_rich Low_complexity Low_complexity 1 38 0 477 15 73 0 chrX 73614229 73614297 -88985633 + L1P4 LINE L1 5403 5475 -686 4584 128 12 4 chrX 73614318 73614676 -88985254 - L1PB1 LINE L1 -3 6864 6510 369 0 0 0 chrX 73614676 73614717 -88985213 + (TA)n Simple_repeat Simple_repeat 2 42 0 4584 128 12 4 chrX 73614717 73615116 -88984814 - L1PB1 LINE L1 -357 6510 6101 42024 41 1 1 chrX 73615412 73621563 -88978367 - L1PA3 LINE L1 -4 6151 1 13021 189 44 12 chrX 73621564 73623367 -88976563 - L1PB1 LINE L1 -752 6110 4366 2745 62 0 11 chrX 73623367 73623722 -88976208 - L1PA5 LINE L1 0 6154 5804 13021 189 44 12 chrX 73623722 73625948 -88973982 - L1PB1 LINE L1 -2496 4366 1901 2495 72 7 0 chrX 73625948 73626253 -88973677 - AluY SINE Alu -4 307 1 13021 189 44 12 chrX 73626253 73626864 -88973066 - L1PB1 LINE L1 -4961 1901 1311 327 156 0 16 chrX 73626869 73626933 -88972997 - L1PB1 LINE L1 -5707 1156 1094 3014 218 81 16 chrX 73626938 73627915 -88972015 - L1PB1 LINE L1 -5818 1045 6 4999 84 16 1 chrX 73627922 73628616 -88971314 + L1PA13 LINE L1 5460 6163 0 242 297 20 79 chrX 73629165 73629266 -88970664 + MIR3 SINE MIR 93 187 -21 480 327 32 7 chrX 73630510 73630753 -88969177 + L1PA13 LINE L1 13 295 -6543 4039 24 0 0 chrX 73630754 73631250 -88968680 - L1P LINE L1 -2229 3917 3422 * 22998 41 2 0 chrX 73631247 73634269 -88965661 - L1P LINE L1 -2435 3711 684 1211 154 26 13 chrX 73634270 73634503 -88965427 - MSTA LTR MaLR -39 389 154 2988 75 12 7 chrX 73634503 73634914 -88965016 + MLT2A2 LTR ERVL 1 413 -40 502 173 0 13 chrX 73634914 73635064 -88964866 + (TA)n Simple_repeat Simple_repeat 2 149 0 12495 75 12 0 chrX 73635104 73636791 -88963139 + HERVL-A2 LTR ERVL 1 1708 -3946 31 26 0 0 chrX 73636925 73636963 -88962967 + AT_rich Low_complexity Low_complexity 1 38 0 209 237 0 17 chrX 73638516 73638575 -88961355 + (TA)n Simple_repeat Simple_repeat 2 59 0 539 306 44 34 chrX 73639760 73639966 -88959964 - MIR SINE MIR -29 233 26 21 0 0 0 chrX 73640089 73640110 -88959820 + AT_rich Low_complexity Low_complexity 1 21 0 810 193 14 33 chrX 73641104 73641317 -88958613 - L1MD3 LINE L1 0 7995 7787 2240 107 3 0 chrX 73641483 73641773 -88958157 + AluSx SINE Alu 1 291 -21 1725 176 3 13 chrX 73642321 73642627 -88957303 - AluJo SINE Alu -9 303 1 23 0 0 0 chrX 73642675 73642698 -88957232 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chrX 73643107 73643136 -88956794 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2215 77 7 27 chrX 73643698 73643996 -88955934 + AluSp SINE Alu 1 292 -21 30 0 0 0 chrX 73644304 73644334 -88955596 + AT_rich Low_complexity Low_complexity 1 30 0 372 326 75 14 chrX 73644962 73645109 -88954821 + MER5A DNA MER1_type 3 158 -31 201 279 0 0 chrX 73645478 73645521 -88954409 - L2 LINE L2 -678 2636 2594 568 92 151 0 chrX 73645521 73645640 -88954290 + L1M1 LINE L1 5353 5489 -814 624 158 0 0 chrX 73645640 73645735 -88954195 + AluJ/FLAM SINE Alu 1 95 -217 12909 200 42 13 chrX 73645735 73646630 -88953300 - L1PBa LINE L1 -953 5909 5042 2332 101 0 0 chrX 73646630 73646926 -88953004 - AluSq SINE Alu -13 300 5 12909 200 42 13 chrX 73646926 73648294 -88951636 - L1PBa LINE L1 -1820 5042 3715 2173 109 3 7 chrX 73648294 73648587 -88951343 - AluSx SINE Alu -20 292 1 12909 200 42 13 chrX 73648587 73649264 -88950666 - L1PBa LINE L1 -3147 3715 3059 3091 80 2 37 chrX 73649264 73649728 -88950202 + LTR7 LTR ERV1 1 448 -2 12909 200 42 13 chrX 73649728 73652351 -88947579 - L1PBa LINE L1 -3803 3059 6 33739 50 99 1 chrX 73652383 73657967 -88941963 + L1PA4 LINE L1 1 6152 -3 408 146 34 0 chrX 73657978 73658067 -88941863 + L1PB1 LINE L1 5514 5605 -698 1766 101 73 3 chrX 73658081 73658367 -88941563 + L1PB1 LINE L1 5846 6151 0 3024 103 11 7 chrX 73658523 73658979 -88940951 + L1PB1 LINE L1 5693 6150 -1 11991 179 40 28 chrX 73658979 73661141 -88938789 + L1MA2 LINE L1 2175 4310 -1994 2257 137 11 19 chrX 73661141 73661506 -88938424 - THE1B LTR MaLR -2 362 1 11876 90 5 0 chrX 73661506 73663078 -88936852 - THE1B-int LTR MaLR 0 1580 2 2193 127 16 35 chrX 73663079 73663450 -88936480 - THE1B LTR MaLR 0 364 1 11991 179 40 28 chrX 73663450 73664836 -88935094 + L1MA2 LINE L1 4309 5771 -533 6897 160 33 35 chrX 73664836 73665410 -88934520 + L1PA14 LINE L1 4068 4642 -1519 2338 80 0 58 chrX 73665410 73665735 -88934195 - AluSx SINE Alu -6 306 1 6897 160 33 35 chrX 73665735 73666586 -88933344 + L1PA14 LINE L1 4642 5493 -668 1888 165 0 10 chrX 73666586 73666889 -88933041 + AluJb SINE Alu 1 300 -12 6897 160 33 35 chrX 73666889 73667088 -88932842 + L1PA14 LINE L1 5493 5691 -470 1251 138 228 17 chrX 73667088 73667320 -88932610 + AluSg1 SINE Alu 1 281 -28 6897 160 33 35 chrX 73667320 73667801 -88932129 + L1PA14 LINE L1 5691 6159 -2 3371 108 21 0 chrX 73667805 73668324 -88931606 + L1MA2 LINE L1 5775 6304 0 2178 120 3 0 chrX 73668925 73669233 -88930697 - AluSx SINE Alu -3 309 1 424 299 163 21 chrX 73669538 73669913 -88930017 - L2 LINE L2 -558 2756 2329 242 250 83 0 chrX 73670111 73670183 -88929747 - L2 LINE L2 -526 2788 2711 569 210 66 22 chrX 73670219 73670400 -88929530 + MER53 DNA DNA 1 189 0 1945 128 20 0 chrX 73671639 73671936 -88927994 - AluSx SINE Alu -9 303 1 598 151 151 8 chrX 73672095 73672214 -88927716 + AluJo SINE Alu 1 136 -176 394 256 190 0 chrX 73672797 73672934 -88926996 - MIR3 SINE MIR -15 193 31 1140 164 14 5 chrX 73673966 73674173 -88925757 - L1MC4 LINE L1 -1053 6989 6781 2245 93 0 69 chrX 73674784 73675117 -88924813 - AluSx SINE Alu -1 311 2 25 0 0 0 chrX 73675130 73675155 -88924775 + AT_rich Low_complexity Low_complexity 1 25 0 2347 101 0 0 chrX 73675160 73675457 -88924473 + AluSx SINE Alu 1 297 -15 232 378 161 24 chrX 73676023 73676272 -88923658 - L2 LINE L2 0 3272 2990 1046 233 25 8 chrX 73676544 73676780 -88923150 - MIR SINE MIR -21 241 2 1044 162 219 7 chrX 73677257 73677535 -88922395 - MER44D DNA MER2_type -1 608 2 351 0 0 0 chrX 73677763 73677802 -88922128 + (CA)n Simple_repeat Simple_repeat 2 40 0 268 129 43 29 chrX 73678068 73678119 -88921811 + L1MA7 LINE L1 6220 6274 -17 2004 118 36 0 chrX 73678119 73678398 -88921532 + AluSx SINE Alu 1 289 -23 268 129 43 29 chrX 73678398 73678416 -88921514 + L1MA7 LINE L1 6274 6290 -1 25 31 0 0 chrX 73678435 73678467 -88921463 + AT_rich Low_complexity Low_complexity 1 32 0 479 279 95 19 chrX 73680426 73680584 -88919346 + MIR SINE MIR 37 206 -56 384 22 0 0 chrX 73681150 73681195 -88918735 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 2216 65 7 11 chrX 73681218 73681496 -88918434 - AluY SINE Alu -34 277 1 2211 96 10 7 chrX 73681858 73682149 -88917781 - AluSx SINE Alu -20 292 1 342 259 56 19 chrX 73682809 73682917 -88917013 + MIR SINE MIR 9 120 -142 2444 219 168 26 chrX 73683021 73683946 -88915984 + HAL1 LINE L1 1452 2507 0 196 237 0 0 chrX 73683961 73683999 -88915931 + L2 LINE L2 3256 3293 -20 633 174 185 43 chrX 73685797 73685981 -88913949 + MER20 DNA MER1_type 1 210 -9 1140 172 21 5 chrX 73685994 73686180 -88913750 - MER5A DNA MER1_type 0 189 1 2357 104 0 0 chrX 73686506 73686815 -88913115 + AluSc SINE Alu 1 309 0 387 0 0 0 chrX 73687960 73688003 -88911927 + (CA)n Simple_repeat Simple_repeat 2 44 0 1768 184 0 23 chrX 73688184 73688494 -88911436 - AluJo SINE Alu -9 303 1 460 241 21 50 chrX 73688537 73688678 -88911252 - L2 LINE L2 -8 3305 3169 276 30 0 0 chrX 73688987 73689020 -88910910 + (CA)n Simple_repeat Simple_repeat 2 34 0 511 244 99 48 chrX 73689070 73689354 -88910576 + L1MC5 LINE L1 7433 7738 -223 1319 112 108 9 chrX 73689354 73689568 -88910362 + MER46A DNA MER2_type 1 235 -1 511 244 99 48 chrX 73689568 73689615 -88910315 + L1MC5 LINE L1 7738 7781 -180 1947 146 7 3 chrX 73689619 73689913 -88910017 + AluJb SINE Alu 1 295 -17 209 240 10 0 chrX 73689915 73690011 -88909919 + (TA)n Simple_repeat Simple_repeat 2 98 0 258 105 0 0 chrX 73690044 73690082 -88909848 + (TG)n Simple_repeat Simple_repeat 2 39 0 390 218 27 36 chrX 73690109 73690219 -88909711 + L1MC5 LINE L1 7806 7914 -47 1575 119 197 31 chrX 73690534 73690854 -88909076 - THE1C LTR MaLR 0 375 3 1396 231 99 82 chrX 73691374 73691800 -88908130 + LTR33 LTR ERVL 1 418 -103 282 56 0 0 chrX 73691800 73691836 -88908094 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1623 165 18 7 chrX 73691841 73692113 -88907817 - AluJb SINE Alu -37 275 1 1396 231 99 82 chrX 73692113 73692166 -88907764 + LTR33 LTR ERVL 421 494 -27 349 224 0 0 chrX 73694124 73694191 -88905739 + MIR SINE MIR 39 105 -103 1549 181 3 38 chrX 73694253 73694545 -88905385 + AluJo SINE Alu 1 282 -30 2164 117 7 0 chrX 73694739 73695037 -88904893 - AluSg SINE Alu -10 300 1 635 117 0 146 chrX 73695602 73695739 -88904191 + MER58B DNA MER1_type 219 335 -6 557 182 0 20 chrX 73696027 73696126 -88903804 + L1ME3A LINE L1 6015 6111 -59 1776 235 85 43 chrX 73696885 73697085 -88902845 + MER68 LTR ERV1 5 195 -367 1960 136 16 19 chrX 73697085 73697394 -88902536 - AluJb SINE Alu -3 309 2 1776 235 85 43 chrX 73697394 73697725 -88902205 + MER68 LTR ERV1 195 558 -4 610 251 60 127 chrX 73698036 73698367 -88901563 - L2 LINE L2 0 3313 3005 627 214 41 26 chrX 73698758 73698927 -88901003 + MER33 DNA MER1_type 1 152 -98 1718 155 26 16 chrX 73699033 73699336 -88900594 + AluJb SINE Alu 1 306 -6 604 122 65 0 chrX 73699342 73699449 -88900481 + L1MA3 LINE L1 6192 6305 0 891 150 0 0 chrX 73699789 73699922 -88900008 - FLAM_C SINE Alu -10 133 1 1806 160 10 33 chrX 73699954 73700254 -88899676 + AluJb SINE Alu 2 294 -18 696 249 63 36 chrX 73700654 73700875 -88899055 + L1ME3A LINE L1 5944 6170 0 24 0 0 0 chrX 73701077 73701101 -88898829 + AT_rich Low_complexity Low_complexity 1 24 0 380 211 146 24 chrX 73701464 73701587 -88898343 + MIR SINE MIR 124 261 -1 2934 204 90 83 chrX 73702485 73703275 -88896655 + L1MD2 LINE L1 5433 6227 -15 316 203 0 58 chrX 73704123 73704192 -88895738 + MIR SINE MIR 42 106 -102 329 245 112 0 chrX 73706829 73706927 -88893003 - MIR SINE MIR -52 210 102 1185 130 5 11 chrX 73706928 73707113 -88892817 + AluJo SINE Alu 1 184 -128 2308 96 7 43 chrX 73707113 73707209 -88892721 - MER51A LTR ERV1 -18 616 518 3198 153 52 76 chrX 73707209 73707917 -88892013 - LTR8 LTR ERV1 0 691 1 2308 96 7 43 chrX 73707917 73708207 -88891723 - MER51A LTR ERV1 -116 518 160 1054 270 81 26 chrX 73708295 73708680 -88891250 + LTR16A LTR ERVL 25 430 -20 961 214 29 29 chrX 73708681 73708887 -88891043 + MLT1E LTR MaLR 13 218 -375 2435 92 0 0 chrX 73708887 73709192 -88890738 - AluSx SINE Alu -7 305 1 572 175 74 115 chrX 73709192 73709411 -88890519 + LTR56 LTR ERV1 230 437 0 852 136 14 27 chrX 73709685 73709832 -88890098 - AluJb SINE Alu -31 281 137 281 232 0 0 chrX 73709832 73709888 -88890042 - MER94 DNA DNA -78 56 1 551 239 99 46 chrX 73710462 73710800 -88889130 + MLT1J LTR MaLR 33 459 -52 451 269 88 29 chrX 73710908 73711079 -88888851 + L1MC4a LINE L1 4797 4977 -1169 584 246 104 33 chrX 73711115 73711326 -88888604 + L1MC4a LINE L1 5606 5831 -1977 456 188 0 0 chrX 73711334 73711403 -88888527 + AluJ/FRAM SINE Alu 214 282 -30 195 100 0 0 chrX 73711415 73711445 -88888485 + (TA)n Simple_repeat Simple_repeat 2 31 0 759 153 8 8 chrX 73711479 73711610 -88888320 + AluJo SINE Alu 1 131 -171 239 250 195 0 chrX 73711611 73711775 -88888155 + L1MC4a LINE L1 5977 6172 -1636 2188 95 20 3 chrX 73712678 73712983 -88886947 - AluSq SINE Alu -3 310 1 234 65 0 0 chrX 73713374 73713405 -88886525 + LTR8A LTR ERV1 1 31 -696 658 219 57 158 chrX 73713405 73714070 -88885860 + LTR38B LTR ERV1 1 598 -12 21 0 0 0 chrX 73714524 73714545 -88885385 + AT_rich Low_complexity Low_complexity 1 21 0 598 195 107 12 chrX 73714551 73714720 -88885210 + L1ME3A LINE L1 5986 6170 0 922 189 6 0 chrX 73714732 73714891 -88885039 + AluJo SINE Alu 137 296 -16 1548 170 6 64 chrX 73714992 73715322 -88884608 - AluJo SINE Alu -1 311 1 2251 123 0 0 chrX 73715472 73715780 -88884150 - AluSx SINE Alu -4 308 1 474 311 68 0 chrX 73715821 73716011 -88883919 - L1M4 LINE L1 -1892 4254 4052 309 26 0 0 chrX 73716095 73716133 -88883797 + (CA)n Simple_repeat Simple_repeat 1 38 0 326 169 0 0 chrX 73716134 73716193 -88883737 + MER112 DNA MER1_type 99 157 -103 439 213 30 3 chrX 73716216 73716356 -88883574 + L1MC5 LINE L1 7609 7836 -206 2436 139 13 21 chrX 73716356 73716737 -88883193 + MSTC LTR MaLR 1 378 -50 20931 165 26 16 chrX 73716738 73720279 -88879651 + L1M1 LINE L1 17 3518 -4047 1772 141 0 8 chrX 73720279 73720535 -88879395 + AluSq SINE Alu 1 254 -59 20931 165 26 16 chrX 73720535 73721269 -88878661 + L1M1 LINE L1 3518 4243 -3322 2192 120 0 0 chrX 73721269 73721568 -88878362 + AluY SINE Alu 1 299 -12 20931 165 26 16 chrX 73721568 73722132 -88877798 + L1M1 LINE L1 4243 4799 -2766 2025 89 89 7 chrX 73722132 73722413 -88877517 + AluSq SINE Alu 1 304 -9 414 0 0 0 chrX 73722417 73722463 -88877467 + (CA)n Simple_repeat Simple_repeat 1 46 0 20931 165 26 16 chrX 73722463 73723701 -88876229 + L1M1 LINE L1 4801 6181 -1384 230 206 122 65 chrX 73723732 73723782 -88876148 - MIR SINE MIR -15 247 201 2217 156 30 50 chrX 73723782 73724180 -88875750 - MLT1B LTR MaLR 0 390 1 230 206 122 65 chrX 73724180 73724236 -88875694 - MIR SINE MIR -61 201 135 2724 111 28 25 chrX 73724665 73724850 -88875080 - L1MC2 LINE L1 -5 6339 6156 366 23 0 0 chrX 73724850 73724893 -88875037 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2724 111 28 25 chrX 73724893 73725140 -88874790 - L1MC2 LINE L1 -188 6156 5906 1465 174 95 12 chrX 73725140 73725496 -88874434 - MSTC LTR MaLR -1 427 1 1269 158 33 38 chrX 73725496 73725736 -88874194 - L1MC2 LINE L1 -433 5911 5673 2131 107 7 3 chrX 73725779 73726070 -88873860 - AluSg SINE Alu -18 292 1 2449 85 0 0 chrX 73726213 73726518 -88873412 + AluSc SINE Alu 1 305 -4 347 200 111 59 chrX 73726575 73726597 -88873333 - L1ME4a LINE L1 0 6121 6102 1952 152 0 3 chrX 73726597 73726900 -88873030 + AluJo SINE Alu 1 302 -10 347 200 111 59 chrX 73726900 73727012 -88872918 - L1ME4a LINE L1 -19 6102 5980 277 220 57 0 chrX 73727032 73727173 -88872757 + (TA)n Simple_repeat Simple_repeat 1 149 0 767 288 89 32 chrX 73727185 73727291 -88872639 - L1ME4a LINE L1 -18 6103 6004 2292 90 10 3 chrX 73727291 73727591 -88872339 + AluSg SINE Alu 1 302 -8 767 288 89 32 chrX 73727591 73727957 -88871973 - L1ME4a LINE L1 -117 6004 5604 1124 178 5 27 chrX 73728202 73728421 -88871509 + L1MB3 LINE L1 5851 6064 -119 440 107 0 174 chrX 73728421 73728482 -88871448 - LTR38B LTR ERV1 0 610 540 2036 114 0 24 chrX 73728482 73728771 -88871159 + AluSx SINE Alu 1 282 -30 410 0 0 20 chrX 73728775 73728826 -88871104 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 440 107 0 174 chrX 73728826 73728880 -88871050 - LTR38B LTR ERV1 -73 537 511 29399 48 2 1 chrX 73728882 73734034 -88865896 + L1PA5 LINE L1 978 6141 -13 1873 163 136 57 chrX 73734038 73734516 -88865414 + LTR10A LTR ERV1 33 548 -61 263 333 20 10 chrX 73734587 73734689 -88865241 - L2 LINE L2 -1 3271 3169 312 291 188 63 chrX 73734911 73735134 -88864796 + L3 LINE CR1 940 1190 -387 2318 98 13 0 chrX 73735202 73735509 -88864421 - AluSx SINE Alu -1 311 1 2041 142 10 0 chrX 73735509 73735804 -88864126 - AluSx SINE Alu -14 298 1 392 214 0 0 chrX 73735810 73735880 -88864050 - ORSL DNA AcHobo -205 70 1 4607 120 15 47 chrX 73736205 73736334 -88863596 + Tigger3b DNA MER2_type 1 133 -2895 5107 88 184 0 chrX 73736334 73737030 -88862900 + LTR12 LTR ERV1 1 824 -2 4607 120 15 47 chrX 73737030 73737432 -88862498 + Tigger3b DNA MER2_type 133 546 -2482 1884 97 8 12 chrX 73737432 73737689 -88862241 - AluSx SINE Alu -13 299 44 4607 120 15 47 chrX 73737689 73737701 -88862229 + Tigger3b DNA MER2_type 546 557 -2471 2957 9 0 0 chrX 73737701 73738019 -88861911 - AluYb8 SINE Alu 0 318 1 4607 120 15 47 chrX 73738019 73738118 -88861812 + Tigger3b DNA MER2_type 557 618 -2410 2266 119 0 6 chrX 73738118 73738429 -88861501 + AluSg SINE Alu 2 310 0 4607 120 15 47 chrX 73738429 73738565 -88861365 + Tigger3b DNA MER2_type 618 757 -474 1295 178 63 37 chrX 73738584 73738836 -88861094 - AluJo SINE Alu -35 277 16 5404 78 9 0 chrX 73738836 73739490 -88860440 + PABL_A LTR ERV1 1 660 0 1295 178 63 37 chrX 73739490 73739507 -88860423 - AluJo SINE Alu -296 16 1 3131 127 17 10 chrX 73739509 73739990 -88859940 + Tigger3b DNA MER2_type 749 1232 0 611 265 112 5 chrX 73740175 73740371 -88859559 + L3 LINE CR1 1359 1575 -2 1232 234 4 0 chrX 73740396 73740635 -88859295 + MIR SINE MIR 2 241 -21 1524 203 119 12 chrX 73740959 73741363 -88858567 + LTR2 LTR ERV1 3 449 0 2161 132 7 0 chrX 73741603 73741913 -88858017 + AluSx SINE Alu 1 312 0 2077 148 0 0 chrX 73741918 73742228 -88857702 + AluSx SINE Alu 1 310 -2 360 240 144 34 chrX 73742251 73742397 -88857533 + MIR SINE MIR 45 206 -56 189 0 0 0 chrX 73742692 73742713 -88857217 + (CA)n Simple_repeat Simple_repeat 2 22 0 40 0 0 0 chrX 73743093 73743133 -88856797 + AT_rich Low_complexity Low_complexity 1 40 0 2145 116 0 0 chrX 73743133 73743417 -88856513 - AluSx SINE Alu -28 284 1 2196 106 0 0 chrX 73743426 73743747 -88856183 - AluSg SINE Alu 0 321 1 234 228 188 59 chrX 73743990 73744091 -88855839 + MER5B DNA MER1_type 3 116 -62 848 253 5 11 chrX 73744113 73744303 -88855627 - MER5A DNA MER1_type 0 189 1 1511 138 15 147 chrX 73744336 73744709 -88855221 - AluY SINE Alu 0 330 1 2253 103 0 3 chrX 73745417 73745709 -88854221 + AluSx SINE Alu 1 291 -21 180 125 75 0 chrX 73745983 73746023 -88853907 - MIR SINE MIR -65 143 101 481 222 63 141 chrX 73746035 73746305 -88853625 - LTR1B LTR ERV1 -7 819 571 615 211 55 0 chrX 73746321 73746449 -88853481 + LTR1B LTR ERV1 359 493 -333 3244 86 40 7 chrX 73747170 73747600 -88852330 + MLT2A1 LTR ERVL 1 444 0 2107 112 13 7 chrX 73748534 73748838 -88851092 - AluSx SINE Alu -6 306 1 2182 111 7 3 chrX 73748842 73749179 -88850751 - AluSq SINE Alu 0 313 1 621 247 67 36 chrX 73749450 73749644 -88850286 - MIR SINE MIR -1 261 62 531 228 49 0 chrX 73750723 73750846 -88849084 + MLT1L LTR MaLR 161 289 -326 800 174 196 27 chrX 73750854 73751038 -88848892 + L1ME1 LINE L1 5436 5647 -519 360 191 0 0 chrX 73751038 73751101 -88848829 - MER20 DNA MER1_type 0 219 157 607 138 15 77 chrX 73751105 73751231 -88848699 + THE1C LTR MaLR 1 118 -257 312 187 120 0 chrX 73751231 73751306 -88848624 + MER4A LTR ERV1 1 84 -580 5863 12 0 0 chrX 73751306 73752004 -88847926 - L1HS LINE L1 -247 5908 5211 2170 4 0 0 chrX 73752003 73752242 -88847688 + L1HS LINE L1 5917 6155 0 * 1827 127 5 72 chrX 73752289 73752659 -88847271 + MER4A LTR ERV1 261 664 0 1314 91 29 179 chrX 73752659 73752966 -88846964 + THE1C LTR MaLR 115 375 0 729 153 117 15 chrX 73752970 73753107 -88846823 - MER20 DNA MER1_type -66 153 3 1712 251 14 14 chrX 73753109 73753547 -88846383 + L1ME1 LINE L1 5646 6083 -83 4795 126 22 15 chrX 73753599 73754335 -88845595 - Tigger1 DNA MER2_type -1036 1382 642 2067 155 134 8 chrX 73754335 73754715 -88845215 + MSTA LTR MaLR 1 428 0 9703 144 9 39 chrX 73754718 73755114 -88844816 + MSTA-int LTR MaLR 3 410 -1170 2343 116 55 19 chrX 73755114 73755476 -88844454 - THE1C LTR MaLR 0 375 1 9703 144 9 39 chrX 73755476 73756707 -88843223 + MSTA-int LTR MaLR 410 1580 0 2235 123 174 8 chrX 73756707 73757074 -88842856 + MSTA LTR MaLR 1 428 0 1443 158 26 40 chrX 73757075 73757347 -88842583 - AluJo SINE Alu 0 312 45 526 153 71 0 chrX 73757347 73757445 -88842485 + MLT1D LTR MaLR 401 505 0 223 298 0 48 chrX 73757449 73757533 -88842397 - MIR SINE MIR -173 89 10 1233 110 87 0 chrX 73757835 73758113 -88841817 - L1MA6 LINE L1 -743 5403 5184 * 5055 137 29 14 chrX 73758078 73758934 -88840996 + L1MA6 LINE L1 5431 6299 -1 278 118 39 0 chrX 73761104 73761155 -88838775 + (TATG)n Simple_repeat Simple_repeat 4 56 0 23 0 0 0 chrX 73761646 73761669 -88838261 + AT_rich Low_complexity Low_complexity 1 23 0 191 250 0 42 chrX 73762019 73762067 -88837863 - L2 LINE L2 -12 3260 3215 21 36 0 0 chrX 73762473 73762501 -88837429 + AT_rich Low_complexity Low_complexity 1 28 0 2007 124 0 7 chrX 73762542 73762858 -88837072 + AluSx SINE Alu 1 314 0 2315 111 0 0 chrX 73764415 73764712 -88835218 - AluSx SINE Alu -15 297 1 851 303 31 11 chrX 73765047 73765383 -88834547 - L1ME LINE L1 -394 5768 5420 374 223 58 25 chrX 73766023 73766144 -88833786 + L1MC4 LINE L1 7907 8031 -11 1368 125 0 0 chrX 73816173 73816357 -88783573 + AluSg/x SINE Alu 117 300 -12 1017 295 51 33 chrX 73817504 73817878 -88782052 + L1MC4a LINE L1 5441 5826 -1982 2421 86 3 0 chrX 73817878 73818179 -88781751 - AluSx SINE Alu -10 302 1 1017 295 51 33 chrX 73818179 73818255 -88781675 + L1MC4a LINE L1 5826 5899 -1909 2409 85 3 0 chrX 73818440 73818747 -88781183 + AluSp SINE Alu 1 308 -5 367 265 44 0 chrX 73819993 73820129 -88779801 + L1ME LINE L1 5628 5769 -352 2398 89 3 3 chrX 73820381 73820694 -88779236 + AluSq SINE Alu 1 313 0 22 0 0 0 chrX 73820965 73820987 -88778943 + AT_rich Low_complexity Low_complexity 1 22 0 466 329 6 24 chrX 73821322 73821489 -88778441 + L2 LINE L2 2897 3060 -212 5788 237 83 40 chrX 73821522 73822543 -88777387 + L2 LINE L2 1155 2131 -1182 910 191 20 15 chrX 73822543 73822747 -88777183 + MER3 DNA MER1_type 5 209 0 5788 237 83 40 chrX 73822747 73823222 -88776708 + L2 LINE L2 2131 2584 -729 1618 62 0 0 chrX 73823222 73823414 -88776516 - AluSq SINE Alu -119 194 3 5788 237 83 40 chrX 73823414 73823982 -88775948 + L2 LINE L2 2584 3309 -4 185 348 37 88 chrX 73824033 73824410 -88775520 - L2 LINE L2 -108 3164 2807 856 321 71 55 chrX 73824739 73824975 -88774955 - L2 LINE L2 -1019 2295 2064 2253 102 3 3 chrX 73824975 73825268 -88774662 + AluSx SINE Alu 5 297 -15 856 321 71 55 chrX 73825268 73825844 -88774086 - L2 LINE L2 -1250 2064 1470 1723 139 61 41 chrX 73826618 73826913 -88773017 + AluSg SINE Alu 1 301 -9 694 263 63 63 chrX 73827316 73827712 -88772218 + L1ME4a LINE L1 5270 5665 -2143 439 265 57 78 chrX 73827761 73827954 -88771976 + L1ME4a LINE L1 5783 5968 -153 617 118 10 0 chrX 73827954 73828056 -88771874 + L1MB7 LINE L1 6081 6183 -1 439 265 57 78 chrX 73828056 73828194 -88771736 + L1ME4a LINE L1 5968 6107 -14 2293 113 3 0 chrX 73829025 73829336 -88770594 + AluSx SINE Alu 1 312 0 632 201 18 55 chrX 73829382 73829579 -88770351 + L1MC4 LINE L1 7600 7794 -42 2268 92 7 0 chrX 73829579 73829872 -88770058 - AluSg SINE Alu -15 295 1 632 201 18 55 chrX 73829872 73829907 -88770023 + L1MC4 LINE L1 7794 7829 -7 1783 137 0 70 chrX 73831390 73831527 -88768403 + AluJo SINE Alu 14 159 -153 2385 94 0 0 chrX 73831527 73831826 -88768104 + AluSq SINE Alu 1 299 -14 1265 148 5 19 chrX 73831777 73831977 -88767953 + AluJo SINE Alu 85 304 -8 1783 137 0 70 chrX 73831826 73831977 -88767953 + AluJo SINE Alu 159 283 -29 406 0 0 0 chrX 73831977 73832022 -88767908 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 230 182 0 0 chrX 73832110 73832143 -88767787 + Alu SINE Alu 1 33 -268 3449 172 27 1 chrX 73832152 73832849 -88767081 - L1 LINE L1 -1231 4915 4201 2184 110 0 3 chrX 73832849 73833149 -88766781 - AluSq SINE Alu -14 299 1 3856 273 13 14 chrX 73833153 73834443 -88765487 - L1PBb LINE L1 -3233 3616 2328 895 281 70 24 chrX 73834440 73835005 -88764925 - L1PBb LINE L1 -4814 2035 1358 * 317 302 0 0 chrX 73835017 73835103 -88764827 - L1PBb LINE L1 -5290 1559 1474 5158 160 19 24 chrX 73835629 73837198 -88762732 + L1PA16 LINE L1 4556 6131 -35 2210 100 0 0 chrX 73837198 73837478 -88762452 + AluSx SINE Alu 1 280 -32 330 87 0 0 chrX 73837480 73837526 -88762404 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 5158 160 19 24 chrX 73837526 73837559 -88762371 + L1PA16 LINE L1 6132 6150 -16 438 171 0 0 chrX 73837583 73837659 -88762271 - AluJ/FRAM SINE Alu -18 294 219 180 293 12 61 chrX 73837721 73837803 -88762127 - MIR3 SINE MIR 0 208 131 2141 148 7 61 chrX 73837830 73838241 -88761689 - MER61B LTR ERV1 -36 389 1 308 280 98 15 chrX 73838246 73838378 -88761552 - MIR SINE MIR -57 205 63 512 251 108 46 chrX 73838441 73838636 -88761294 - MIR SINE MIR 0 262 56 23 0 0 0 chrX 73838773 73838796 -88761134 + AT_rich Low_complexity Low_complexity 1 23 0 1844 141 10 36 chrX 73839195 73839499 -88760431 + AluJo SINE Alu 1 296 -16 329 258 68 95 chrX 73840022 73840243 -88759687 + MER20 DNA MER1_type 1 215 -4 1749 178 16 3 chrX 73840256 73840559 -88759371 + AluJb SINE Alu 5 311 -1 1794 128 47 73 chrX 73840925 73841307 -88758623 + THE1C LTR MaLR 1 372 -3 10109 107 6 65 chrX 73841319 73841491 -88758439 + THE1C-int LTR MaLR 1 182 -1398 2188 123 3 0 chrX 73841491 73841793 -88758137 - AluSp SINE Alu -10 303 1 10109 107 6 65 chrX 73841793 73841940 -88757990 + THE1C-int LTR MaLR 182 336 -1244 2568 45 3 3 chrX 73841940 73842250 -88757680 + AluY SINE Alu 1 310 -1 10109 107 6 65 chrX 73842250 73843606 -88756324 + THE1C-int LTR MaLR 336 1578 -2 2043 106 76 31 chrX 73843608 73843965 -88755965 + THE1C LTR MaLR 1 373 -2 225 246 188 0 chrX 73844409 73844478 -88755452 + L2 LINE L2 3223 3304 -9 947 233 51 70 chrX 73844608 73845218 -88754712 + L1MC5 LINE L1 7317 7914 -47 2286 79 4 0 chrX 73845584 73845890 -88754040 - AluSg SINE Alu 0 307 1 338 307 61 53 chrX 73845928 73846400 -88753530 + L1ME LINE L1 5264 5778 -343 859 145 15 0 chrX 73847409 73847540 -88752390 - FLAM_A SINE Alu 0 133 1 951 180 0 6 chrX 73847907 73848068 -88751862 + FRAM SINE Alu 1 160 -6 29 28 0 0 chrX 73848071 73848107 -88751823 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrX 73848296 73848324 -88751606 + AT_rich Low_complexity Low_complexity 1 28 0 2317 101 0 3 chrX 73849137 73849445 -88750485 + AluSg SINE Alu 1 307 -3 631 266 124 23 chrX 73849663 73849881 -88750049 + MIR SINE MIR 9 248 -14 189 0 0 0 chrX 73850071 73850092 -88749838 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1147 228 0 13 chrX 73850108 73850340 -88749590 - AluJo SINE Alu -83 229 1 1842 88 0 20 chrX 73850980 73851231 -88748699 - AluSx SINE Alu -12 300 55 278 256 68 68 chrX 73851448 73851639 -88748291 - HAL1 LINE L1 -742 1765 1575 641 213 38 12 chrX 73851647 73851807 -88748123 + L1M4b LINE L1 11 174 -6685 854 149 13 7 chrX 73851810 73851964 -88747966 + L1M4b LINE L1 318 472 -6383 1496 104 35 27 chrX 73851968 73852227 -88747703 + L1MA2 LINE L1 6037 6297 -7 4968 141 31 42 chrX 73852227 73852391 -88747539 + L1MB7 LINE L1 5163 5327 -857 2537 48 0 0 chrX 73852391 73852684 -88747246 + AluY SINE Alu 1 293 -18 4968 141 31 42 chrX 73852684 73853542 -88746388 + L1MB7 LINE L1 5327 6179 -5 1547 249 101 31 chrX 73853575 73854266 -88745664 - L1MC4a LINE L1 -343 5823 5088 2497 80 0 3 chrX 73854302 73854616 -88745314 - AluSq SINE Alu 0 313 1 400 234 22 0 chrX 73854620 73854730 -88745200 + L1MD3 LINE L1 6223 7973 -22 387 209 64 9 chrX 73854753 73854863 -88745067 + L1MC4 LINE L1 7923 8038 -4 1830 111 3 85 chrX 73854931 73855103 -88744827 - AluJb SINE Alu -30 282 144 2393 103 0 0 chrX 73855103 73855415 -88744515 - AluSx SINE Alu 0 312 1 1830 111 3 85 chrX 73855415 73855549 -88744381 - AluJb SINE Alu -168 144 1 23 68 0 0 chrX 73855593 73855637 -88744293 + AT_rich Low_complexity Low_complexity 1 44 0 517 223 81 106 chrX 73855691 73856064 -88743866 - L1ME4a LINE L1 -86 6035 5673 2055 130 0 14 chrX 73856064 73856357 -88743573 - AluSx SINE Alu -23 289 1 517 223 81 106 chrX 73856357 73856428 -88743502 - L1ME4a LINE L1 -448 5673 5602 273 287 197 0 chrX 73856615 73856737 -88743193 - L3b LINE CR1 -324 1259 1114 405 0 0 0 chrX 73857171 73857216 -88742714 + (TG)n Simple_repeat Simple_repeat 2 46 0 1117 175 67 56 chrX 73857224 73857584 -88742346 - L1MC5 LINE L1 -84 7877 7514 1755 166 0 39 chrX 73857634 73857941 -88741989 + AluJb SINE Alu 1 295 -17 23 54 0 0 chrX 73858352 73858389 -88741541 + AT_rich Low_complexity Low_complexity 1 37 0 1939 89 48 3 chrX 73858406 73858699 -88741231 + L1MA2 LINE L1 5999 6304 0 2014 140 3 0 chrX 73859051 73859336 -88740594 + AluSx SINE Alu 1 286 -26 308 126 46 0 chrX 73859343 73859430 -88740500 + (TA)n Simple_repeat Simple_repeat 2 92 0 2305 92 0 13 chrX 73860090 73860394 -88739536 - AluSx SINE Alu -12 300 1 2370 91 0 0 chrX 73860719 73861017 -88738913 + AluSx SINE Alu 1 298 -14 240 327 18 30 chrX 73861908 73862073 -88737857 + L1ME4a LINE L1 5869 6031 -90 27 0 0 0 chrX 73862147 73862174 -88737756 + AT_rich Low_complexity Low_complexity 1 27 0 464 266 175 14 chrX 73862654 73862797 -88737133 - MER5A DNA MER1_type -1 188 23 516 216 0 0 chrX 73862831 73862928 -88737002 - L1PA16 LINE L1 -9 6157 6061 33 0 0 0 chrX 73863513 73863546 -88736384 + AT_rich Low_complexity Low_complexity 1 33 0 591 113 47 184 chrX 73863754 73863966 -88735964 + L1MC4 LINE L1 7860 8042 0 2334 80 0 10 chrX 73863971 73864282 -88735648 + AluSg SINE Alu 1 308 -2 2365 75 3 10 chrX 73864427 73864733 -88735197 - AluSq SINE Alu -9 304 1 191 288 34 0 chrX 73865058 73865117 -88734813 + L2 LINE L2 3210 3270 -2 1994 142 0 7 chrX 73865175 73865471 -88734459 + AluJo SINE Alu 1 294 -18 2178 110 0 0 chrX 73865651 73865954 -88733976 + AluSx SINE Alu 1 303 0 719 133 0 47 chrX 73865970 73866098 -88733832 + MER39B LTR ERV1 456 577 -76 29 0 0 0 chrX 73866111 73866140 -88733790 + AT_rich Low_complexity Low_complexity 1 29 0 662 194 94 25 chrX 73866140 73866446 -88733484 - Tigger3(Golem) DNA MER2_type -1 3028 14 548 192 212 0 chrX 73866551 73866697 -88733233 - MER5A DNA MER1_type 0 189 13 2299 100 0 7 chrX 73867103 73867403 -88732527 + AluSx SINE Alu 1 298 -14 2240 114 0 0 chrX 73867654 73867951 -88731979 + AluSg SINE Alu 1 297 -13 1907 155 3 3 chrX 73867987 73868277 -88731653 - AluJb SINE Alu -22 290 1 3389 153 19 14 chrX 73868336 73868959 -88730971 + L1MB7 LINE L1 5540 6165 -19 813 249 127 40 chrX 73869517 73869998 -88729932 - L1ME4a LINE L1 -23 6098 5576 22 0 0 0 chrX 73872230 73872252 -88727678 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chrX 73872529 73872572 -88727358 + (CA)n Simple_repeat Simple_repeat 2 44 0 237 305 144 24 chrX 73872572 73872739 -88727191 + MIR SINE MIR 21 219 -43 281 217 58 29 chrX 73872768 73872837 -88727093 - L2 LINE L2 -11 3302 3232 520 307 96 72 chrX 73872851 73873625 -88726305 - L2 LINE L2 -172 3100 2239 461 228 73 112 chrX 73874135 73874368 -88725562 + L1ME1 LINE L1 5943 6166 0 688 159 56 0 chrX 73874372 73874498 -88725432 - MER3 DNA MER1_type -62 147 15 1773 155 10 14 chrX 73874697 73874988 -88724942 + AluJb SINE Alu 4 293 -19 1463 109 10 0 chrX 73875351 73875553 -88724377 + AluSq SINE Alu 1 204 -109 679 127 0 36 chrX 73875574 73875684 -88724246 + AluSg/x SINE Alu 190 295 -17 508 235 0 10 chrX 73875687 73875785 -88724145 - L2 LINE L2 0 3313 3217 2063 86 65 0 chrX 73876033 73876312 -88723618 + AluSq SINE Alu 1 297 -16 243 262 274 0 chrX 73876663 73876747 -88723183 + MIR3 SINE MIR 89 195 -13 2191 154 6 3 chrX 73876837 73877180 -88722750 + MLT1A1 LTR MaLR 22 365 0 338 296 28 9 chrX 73877204 73877312 -88722618 - MIR SINE MIR -142 120 11 216 222 22 0 chrX 73877788 73877833 -88722097 - MIR SINE MIR -64 144 99 817 159 8 0 chrX 73878362 73878488 -88721442 - FLAM_C SINE Alu -6 127 1 388 234 28 28 chrX 73878896 73879003 -88720927 + L1MC4a LINE L1 5831 5937 -1871 2278 86 3 10 chrX 73879049 73879351 -88720579 + AluSq SINE Alu 1 300 -13 1775 112 12 0 chrX 73879542 73879793 -88720137 - AluSg SINE Alu 0 310 57 964 82 0 0 chrX 73880485 73880620 -88719310 - L1PA13 LINE L1 -1 6162 6028 2030 171 100 43 chrX 73880743 73880885 -88719045 - MER69 DNA AcHobo -1 2525 2393 2172 120 0 10 chrX 73880885 73881186 -88718744 + AluSx SINE Alu 1 298 -14 2030 171 100 43 chrX 73881186 73881603 -88718327 - MER69 DNA AcHobo -133 2393 1934 2073 237 0 20 chrX 73881611 73882063 -88717867 - MER69 DNA AcHobo -2083 443 1 23 33 0 0 chrX 73882930 73882960 -88716970 + AT_rich Low_complexity Low_complexity 1 30 0 2301 107 0 3 chrX 73884226 73884535 -88715395 + AluSx SINE Alu 1 308 -4 966 9 9 0 chrX 73885021 73885134 -88714796 + L1PA2 LINE L1 6038 6151 -4 2842 212 61 15 chrX 73885190 73885572 -88714358 + L1ME LINE L1 3793 4156 -1990 2057 142 7 0 chrX 73885572 73885867 -88714063 + AluSx SINE Alu 1 297 -15 2842 212 61 15 chrX 73885867 73886355 -88713575 + L1ME LINE L1 4156 4703 -1443 1223 183 27 47 chrX 73886362 73886663 -88713267 + L1ME LINE L1 5290 5584 -582 1078 238 37 53 chrX 73886674 73886973 -88712957 - Cheshire DNA MER1_type -2126 294 1 1855 143 0 56 chrX 73887214 73887365 -88712565 + AluJb SINE Alu 1 126 -186 2294 96 7 0 chrX 73887365 73887658 -88712272 + AluSp SINE Alu 1 295 -18 1855 143 0 56 chrX 73887658 73887828 -88712102 + AluJb SINE Alu 126 304 -8 1088 203 68 88 chrX 73888760 73889191 -88710739 + L2 LINE L2 2779 3189 -124 2869 164 3 103 chrX 73889191 73889326 -88710604 + MLT1F1 LTR MaLR 1 148 -419 2064 120 17 3 chrX 73889326 73889627 -88710303 - AluSx SINE Alu -7 305 1 2869 164 3 103 chrX 73889627 73890121 -88709809 + MLT1F1 LTR MaLR 148 567 0 1088 203 68 88 chrX 73890121 73890176 -88709754 + L2 LINE L2 3189 3244 -69 3835 143 41 7 chrX 73941162 73942102 -88657828 + L1PB2 LINE L1 4859 5830 -321 1956 170 3 0 chrX 73942111 73942422 -88657508 + AluJb SINE Alu 1 312 0 2323 96 3 6 chrX 73942428 73942897 -88657033 + AluSp SINE Alu 1 468 0 2165 104 9 3 chrX 73942908 73943225 -88656705 + L1PB1 LINE L1 5832 6150 -1 284 163 0 0 chrX 73943341 73943384 -88656546 - Alu SINE Alu -254 46 4 1043 75 0 14 chrX 73943540 73943686 -88656244 - L1PA5 LINE L1 -4 6150 6007 579 67 75 17 chrX 73943694 73943814 -88656116 - L1P LINE L1 -2391 3755 3629 401 161 77 62 chrX 73943952 73944082 -88655848 + L1ME1 LINE L1 5911 6042 -124 198 0 0 0 chrX 73944088 73944110 -88655820 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 348 24 0 0 chrX 73944109 73944150 -88655780 + (CA)n Simple_repeat Simple_repeat 1 41 0 2178 128 0 3 chrX 73945235 73945531 -88654399 + AluSx SINE Alu 1 295 -17 266 235 15 0 chrX 73945610 73945678 -88654252 - L1ME LINE L1 -459 5662 5594 389 113 150 0 chrX 73946379 73946459 -88653471 + L1MB1 LINE L1 6075 6166 -2 453 346 28 28 chrX 73946496 73946750 -88653180 + L1ME LINE L1 4773 5026 -1120 265 244 9 26 chrX 73946902 73947017 -88652913 + L1ME LINE L1 5256 5368 -2440 333 293 73 20 chrX 73947062 73947212 -88652718 + L1ME LINE L1 5448 5605 -516 978 251 39 14 chrX 73947251 73947534 -88652396 + L1MC4a LINE L1 5513 5802 -2006 780 123 54 39 chrX 73947625 73947755 -88652175 - FLAM_C SINE Alu 0 133 2 299 254 79 0 chrX 73947756 73947870 -88652060 + L1MC4a LINE L1 5825 5947 -1861 192 361 7 103 chrX 73948049 73948204 -88651726 - MIR SINE MIR -122 140 1 186 263 18 18 chrX 73948390 73948447 -88651483 + MIR SINE MIR 13 69 -193 668 296 64 9 chrX 73948703 73948923 -88651007 + MIR SINE MIR 6 237 -25 1141 165 184 24 chrX 73949068 73949323 -88650607 + AluJo SINE Alu 2 297 -5 1223 142 24 19 chrX 73949428 73949639 -88650291 + Tigger4(Zombi) DNA MER2_type 1 212 -2519 4435 97 41 33 chrX 73949639 73949750 -88650180 + Tigger4(Zombi) DNA MER2_type 1962 2071 -660 1983 142 0 14 chrX 73949750 73950045 -88649885 - AluJo SINE Alu -21 291 1 4435 97 41 33 chrX 73950045 73950693 -88649237 + Tigger4(Zombi) DNA MER2_type 2071 2727 -4 312 226 54 54 chrX 73950697 73950790 -88649140 + L2 LINE L2 3127 3219 -94 260 109 0 22 chrX 73950815 73950861 -88649069 + FLAM SINE Alu 76 120 -13 1074 201 103 0 chrX 73950872 73951086 -88648844 + MIR SINE MIR 26 261 -1 380 241 13 0 chrX 73951096 73951175 -88648755 + L2 LINE L2 3233 3312 -1 279 0 0 0 chrX 73951226 73951257 -88648673 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 3578 35 0 0 chrX 73951386 73951784 -88648146 + SVA Other Other 989 1386 0 195 42 0 0 chrX 73951790 73951814 -88648116 + (A)n Simple_repeat Simple_repeat 1 24 0 901 225 28 0 chrX 73952043 73952221 -88647709 - MIR SINE MIR -64 198 16 451 311 55 40 chrX 73952221 73952549 -88647381 - HAL1 LINE L1 -1740 767 435 307 278 40 75 chrX 73952738 73952911 -88647019 - HAL1 LINE L1 -2333 174 8 906 131 0 0 chrX 73953030 73953160 -88646770 + FLAM_C SINE Alu 2 131 -2 183 211 0 70 chrX 73953945 73954002 -88645928 + L2 LINE L2 3254 3306 -7 195 42 0 0 chrX 73954375 73954399 -88645531 + (TG)n Simple_repeat Simple_repeat 2 25 0 342 170 0 106 chrX 73954522 73954616 -88645314 + L1ME4a LINE L1 5521 5604 -517 1225 147 74 0 chrX 73954620 73954810 -88645120 + AluJo SINE Alu 86 289 -23 2665 31 22 3 chrX 73954833 73955156 -88644774 + L1PA5 LINE L1 5821 6149 -5 457 192 96 158 chrX 73955158 73955626 -88644304 + L1ME4a LINE L1 5610 6048 -73 681 239 31 77 chrX 73955626 73955794 -88644136 - L2 LINE L2 -3 3310 3153 2246 119 0 0 chrX 73955794 73956089 -88643841 + AluSx SINE Alu 1 295 -17 681 239 31 77 chrX 73956089 73956142 -88643788 - L2 LINE L2 -160 3153 3099 1923 124 25 0 chrX 73956166 73956462 -88643468 + AluSx SINE Alu 1 303 0 2346 88 0 0 chrX 73957805 73958101 -88641829 + AluSx SINE Alu 1 296 -16 249 108 0 0 chrX 73959204 73959241 -88640689 + (A)n Simple_repeat Simple_repeat 1 37 0 546 279 71 16 chrX 73959688 73959871 -88640059 + MIR SINE MIR 20 212 -50 1660 151 8 0 chrX 73960321 73960573 -88639357 - AluJo SINE Alu -54 258 5 225 215 0 15 chrX 73960614 73960679 -88639251 - L1ME LINE L1 -224 5897 5834 936 159 0 0 chrX 73960705 73960843 -88639087 + AluJo SINE Alu 1 138 -174 2137 136 0 10 chrX 73960869 73961179 -88638751 - AluSx SINE Alu -5 307 1 976 219 6 0 chrX 73961192 73961375 -88638555 - MIR SINE MIR -67 195 12 328 328 127 11 chrX 73961464 73961653 -88638277 - L2 LINE L2 -258 3014 2804 866 141 0 0 chrX 73961712 73961861 -88638069 + L1MB4 LINE L1 5790 5938 -242 3903 109 27 19 chrX 73961861 73962283 -88637647 + L1PA16 LINE L1 5521 5954 -212 2520 47 0 7 chrX 73962283 73962580 -88637350 + AluY SINE Alu 1 295 -16 3903 109 27 19 chrX 73962580 73962786 -88637144 + L1PA16 LINE L1 5954 6157 -9 1384 136 8 47 chrX 73962798 73963012 -88636918 + L1MB4 LINE L1 5927 6131 -49 2181 108 10 0 chrX 73963012 73963300 -88636630 + AluSx SINE Alu 1 291 -21 1384 136 8 47 chrX 73963300 73963343 -88636587 + L1MB4 LINE L1 6131 6174 -6 314 331 48 16 chrX 73963519 73963643 -88636287 - MIR SINE MIR -64 144 17 2021 136 0 26 chrX 73964431 73964733 -88635197 + AluJb SINE Alu 7 300 -12 304 318 164 0 chrX 73965700 73965810 -88634120 + L2 LINE L2 3186 3313 0 2195 130 3 0 chrX 73966418 73966726 -88633204 - AluJb SINE Alu -3 309 1 2115 110 0 3 chrX 73966779 73967071 -88632859 + AluSx SINE Alu 1 291 -21 27 87 0 0 chrX 73967162 73967231 -88632699 + AT_rich Low_complexity Low_complexity 1 69 0 804 214 124 15 chrX 73967233 73967434 -88632496 - MIR SINE MIR -5 257 35 2051 112 0 39 chrX 73967458 73967763 -88632167 - AluJb SINE Alu -15 297 5 328 148 0 0 chrX 73967926 73967987 -88631943 + Alu SINE Alu 240 300 -1 1786 119 0 16 chrX 73968096 73968349 -88631581 + AluSx SINE Alu 1 249 -63 1290 128 0 11 chrX 73968358 73968538 -88631392 + AluJb SINE Alu 110 287 -25 44 62 0 10 chrX 73968538 73968579 -88631351 + AT_rich Low_complexity Low_complexity 1 41 -55 826 200 40 0 chrX 73968579 73968729 -88631201 + FRAM SINE Alu 1 156 -10 44 62 0 10 chrX 73968729 73968784 -88631146 + AT_rich Low_complexity Low_complexity 41 96 0 2272 88 7 7 chrX 73970833 73971140 -88628790 - AluSq SINE Alu -6 307 1 22 0 0 0 chrX 73971225 73971247 -88628683 + AT_rich Low_complexity Low_complexity 1 22 0 252 226 32 16 chrX 73973368 73973430 -88626500 + MIR SINE MIR 191 253 -9 1620 183 20 13 chrX 73973964 73974264 -88625666 - AluJo SINE Alu -10 302 1 2168 119 10 0 chrX 73974570 73974865 -88625065 + AluSx SINE Alu 1 298 -14 2259 119 0 0 chrX 73975872 73976174 -88623756 + AluSx SINE Alu 1 302 -10 2262 122 0 10 chrX 73976715 73976850 -88623080 + AluSx SINE Alu 1 136 -176 2433 68 3 0 chrX 73976850 73977142 -88622788 + AluSg SINE Alu 2 294 -16 2262 122 0 10 chrX 73977142 73977318 -88622612 + AluSx SINE Alu 136 309 -3 692 219 0 7 chrX 73977799 73977950 -88621980 + MER3 DNA MER1_type 5 154 -55 2051 103 36 23 chrX 73978130 73978431 -88621499 - AluSx SINE Alu -7 305 1 2620 58 0 0 chrX 73978568 73978879 -88621051 + AluY SINE Alu 1 311 0 743 269 117 29 chrX 73978989 73979297 -88620633 + L3 LINE CR1 1054 1388 -189 2369 89 3 0 chrX 73979306 73979608 -88620322 + AluSx SINE Alu 1 303 -9 1203 135 0 0 chrX 73979608 73979786 -88620144 + AluSg/x SINE Alu 135 312 0 430 310 76 14 chrX 73979795 73979940 -88619990 + L3 LINE CR1 1403 1556 -21 374 228 74 31 chrX 73980314 73980476 -88619454 + L1MC4 LINE L1 7870 8038 -4 1856 147 0 36 chrX 73980764 73981070 -88618860 + AluJo SINE Alu 1 295 -17 954 99 23 0 chrX 73981424 73981555 -88618375 + AluSp/q SINE Alu 168 301 -12 521 238 50 31 chrX 73981913 73982073 -88617857 - MIR SINE MIR -29 233 71 2380 71 7 0 chrX 73982418 73982715 -88617215 - AluSq SINE Alu -14 299 1 258 194 48 16 chrX 73983726 73983788 -88616142 - L1MC4 LINE L1 -1 8041 7978 2423 57 7 0 chrX 73983831 73984131 -88615799 + AluSg SINE Alu 1 302 -8 2381 87 0 3 chrX 73984138 73984448 -88615482 + AluSc SINE Alu 1 309 0 1195 119 72 5 chrX 73984470 73984663 -88615267 + AluSg/x SINE Alu 95 300 -12 555 169 0 0 chrX 73984667 73984756 -88615174 - L1MB3 LINE L1 -62 6121 6033 763 212 150 13 chrX 73984771 73984997 -88614933 - L1MC4a LINE L1 -1644 6164 5908 1654 226 32 25 chrX 73985001 73985404 -88614526 - L1MC4a LINE L1 -1959 5849 5444 1192 205 32 18 chrX 73985422 73985702 -88614228 - L1ME1 LINE L1 -3 6163 5879 2102 132 3 3 chrX 73985710 73986020 -88613910 - AluSp SINE Alu 0 313 4 2418 47 3 31 chrX 73986556 73986874 -88613056 + AluSq SINE Alu 1 309 -4 284 226 209 52 chrX 73988139 73988254 -88611676 - L2 LINE L2 -1 3312 3180 350 206 41 31 chrX 73988850 73988947 -88610983 + L1ME4a LINE L1 5938 6035 -86 1705 148 7 30 chrX 73989017 73989320 -88610610 - AluJo SINE Alu -16 296 1 314 104 0 0 chrX 73989469 73989517 -88610413 + L1MB4 LINE L1 6109 6156 -24 721 217 40 26 chrX 73989776 73989928 -88610002 - AluJb SINE Alu -22 290 137 25 31 0 0 chrX 73990097 73990129 -88609801 + AT_rich Low_complexity Low_complexity 1 32 0 1818 155 14 14 chrX 73990129 73990419 -88609511 - AluJo SINE Alu -22 290 1 1527 97 0 14 chrX 73990740 73990947 -88608983 + AluSx SINE Alu 2 205 -107 237 32 0 0 chrX 73990950 73990981 -88608949 + AluSx SINE Alu 265 295 -7 841 176 0 15 chrX 73991149 73991285 -88608645 - AluJo SINE Alu -177 135 2 241 302 147 0 chrX 73991295 73991411 -88608519 - MIR SINE MIR -8 254 122 653 123 7 152 chrX 73991429 73991567 -88608363 + FLAM_C SINE Alu 2 119 -24 396 0 0 0 chrX 73991574 73991618 -88608312 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 228 307 26 61 chrX 73991618 73991732 -88608198 - MIR SINE MIR -132 130 21 459 299 97 0 chrX 73992084 73992238 -88607692 + MIR SINE MIR 86 254 -8 3133 100 43 4 chrX 73992794 73993262 -88606668 + L1MA2 LINE L1 5796 6281 -23 2367 58 7 14 chrX 73993263 73993557 -88606373 + AluY SINE Alu 1 292 -19 241 167 19 0 chrX 73993560 73993614 -88606316 - LTR66 LTR ERVL -171 439 385 26 0 0 0 chrX 73993621 73993647 -88606283 + AT_rich Low_complexity Low_complexity 1 26 0 1692 163 3 21 chrX 73993653 73993964 -88605966 + AluJb SINE Alu 1 306 0 1255 122 11 0 chrX 73993964 73994145 -88605785 + L1MA2 LINE L1 6115 6297 -7 2143 107 3 10 chrX 73994824 73995115 -88604815 + AluSx SINE Alu 1 289 -23 1761 177 0 22 chrX 73995536 73995852 -88604078 + AluJo SINE Alu 1 309 -3 314 288 15 61 chrX 73996131 73996263 -88603667 + MER5A DNA MER1_type 16 141 -48 1494 157 45 87 chrX 73996263 73996575 -88603355 - AluJo SINE Alu -13 299 1 312 243 119 119 chrX 73996575 73996628 -88603302 - MER5A DNA MER1_type -134 55 3 1511 201 0 38 chrX 73996811 73996936 -88602994 + AluJo SINE Alu 1 129 -183 2237 105 0 0 chrX 73996936 73997230 -88602700 - AluSg SINE Alu -12 298 5 1511 201 0 38 chrX 73997230 73997397 -88602533 + AluJo SINE Alu 129 282 -30 2311 83 0 0 chrX 73997399 73997687 -88602243 - AluSg SINE Alu -18 292 5 1103 156 0 0 chrX 73997697 73997851 -88602079 + FRAM SINE Alu 1 146 -30 2126 58 80 0 chrX 73997855 73998131 -88601799 - AluY SINE Alu -13 298 1 1098 198 19 19 chrX 73998162 73998369 -88601561 + MER20 DNA MER1_type 13 219 0 515 248 65 51 chrX 73998385 73998599 -88601331 + MIR SINE MIR 46 262 0 2115 139 0 0 chrX 73998722 73999023 -88600907 - AluSx SINE Alu -11 301 1 344 164 104 0 chrX 73999095 73999162 -88600768 + AluS SINE Alu 5 78 -225 525 190 51 29 chrX 73999262 73999399 -88600531 - AluSp SINE Alu -172 141 2 1303 119 0 11 chrX 73999399 73999584 -88600346 - AluSg/x SINE Alu 0 310 128 2190 117 0 22 chrX 73999584 73999900 -88600030 - AluSq SINE Alu 0 313 5 820 127 48 0 chrX 73999904 74000030 -88599900 - L1MC/D LINE L1 -630 5612 5481 2282 82 0 0 chrX 74000030 74000373 -88599557 - AluSx SINE Alu 0 343 1 1864 159 3 0 chrX 74000387 74000694 -88599236 - AluSx SINE Alu 0 308 1 1751 223 46 22 chrX 74000695 74000862 -88599068 - L1MC/D LINE L1 -989 5157 4995 2365 94 7 0 chrX 74000862 74001171 -88598759 - AluSp SINE Alu -2 311 1 1751 223 46 22 chrX 74001171 74001464 -88598466 - L1MC/D LINE L1 -1151 4995 4686 863 145 7 7 chrX 74001600 74001738 -88598192 + FLAM_C SINE Alu 3 140 -3 297 0 0 0 chrX 74001738 74001771 -88598159 + (TA)n Simple_repeat Simple_repeat 2 34 0 1671 169 4 0 chrX 74001773 74002046 -88597884 + AluJb SINE Alu 1 274 -38 282 56 0 0 chrX 74002050 74002086 -88597844 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2136 109 7 26 chrX 74002741 74003044 -88596886 + AluSx SINE Alu 1 297 -15 27 29 0 0 chrX 74003477 74003511 -88596419 + AT_rich Low_complexity Low_complexity 1 34 0 266 57 0 0 chrX 74003512 74003547 -88596383 - AluY SINE Alu -214 86 52 1276 56 0 6 chrX 74003555 74003717 -88596213 + L1P1 LINE L1 5619 5779 -376 223 69 69 46 chrX 74003717 74003804 -88596126 + (TTATA)n Simple_repeat Simple_repeat 5 93 0 * 268 100 62 0 chrX 74003786 74003866 -88596064 + (TA)n Simple_repeat Simple_repeat 1 85 0 1779 158 0 7 chrX 74003866 74004157 -88595773 - AluJo SINE Alu -23 289 1 4603 35 0 0 chrX 74004450 74004990 -88594940 - L1P LINE L1 -1913 4233 3694 5154 33 3 0 chrX 74004990 74005564 -88594366 + L1PA5 LINE L1 5565 6143 -11 2265 126 0 0 chrX 74005857 74006166 -88593764 - AluSx SINE Alu -3 309 1 2363 67 3 3 chrX 74006296 74006594 -88593336 - AluSg SINE Alu -12 298 1 2296 110 0 3 chrX 74006843 74007144 -88592786 - AluSc SINE Alu -9 300 1 21 0 0 0 chrX 74007151 74007172 -88592758 + AT_rich Low_complexity Low_complexity 1 21 0 1839 170 10 3 chrX 74007177 74007477 -88592453 + AluJb SINE Alu 1 302 -10 1312 148 118 11 chrX 74007480 74007751 -88592179 + L1MA7 LINE L1 5909 6208 -83 24 0 0 0 chrX 74008266 74008290 -88591640 + AT_rich Low_complexity Low_complexity 1 24 0 2273 89 7 0 chrX 74009117 74009409 -88590521 + AluSx SINE Alu 1 294 -18 2281 97 0 0 chrX 74009609 74009898 -88590032 - AluSg SINE Alu -21 289 1 982 98 0 0 chrX 74009898 74010020 -88589910 - AluSq/x SINE Alu -177 136 15 290 123 46 0 chrX 74010868 74010933 -88588997 - L1MB4 LINE L1 -1 6179 6112 6119 105 38 12 chrX 74011050 74011708 -88588222 - L1PB2 LINE L1 -2 6149 5510 194 81 27 0 chrX 74011708 74011745 -88588185 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6119 105 38 12 chrX 74011745 74012145 -88587785 - L1PB2 LINE L1 -641 5510 5059 1930 120 47 0 chrX 74012145 74012421 -88587509 + AluSx SINE Alu 1 289 -23 6119 105 38 12 chrX 74012421 74012504 -88587426 - L1PB2 LINE L1 -1092 5059 4980 1121 129 0 12 chrX 74012626 74012789 -88587141 - AluSg/x SINE Alu -18 292 132 2237 114 0 19 chrX 74012789 74013105 -88586825 - AluSx SINE Alu -2 310 1 210 290 0 43 chrX 74013448 74013517 -88586413 + L2 LINE L2 2584 2649 -665 256 143 54 36 chrX 74013597 74013653 -88586277 + MER103 DNA DNA 13 69 -97 816 108 0 33 chrX 74013655 74013775 -88586155 - LTR40b LTR ERVL -2 460 345 780 203 0 0 chrX 74013775 74013908 -88586022 - FLAM_A SINE Alu -9 133 1 774 181 35 14 chrX 74013997 74014141 -88585789 + FRAM SINE Alu 20 166 -10 1097 190 63 18 chrX 74014147 74014247 -88585683 - LTR40b LTR ERVL -231 231 137 5500 82 15 0 chrX 74014247 74014928 -88585002 - LTR8 LTR ERV1 0 691 1 1097 190 63 18 chrX 74014928 74015048 -88584882 - LTR40b LTR ERVL -325 137 1 2039 79 38 20 chrX 74015294 74015586 -88584344 - AluSx SINE Alu -15 297 1 2252 59 0 17 chrX 74015866 74016177 -88583753 + AluY SINE Alu 1 306 0 201 250 0 0 chrX 74016226 74016262 -88583668 + L2 LINE L2 3221 3256 -16 2188 100 0 23 chrX 74016448 74016748 -88583182 + AluSx SINE Alu 1 293 -19 5181 84 36 78 chrX 74016887 74017428 -88582502 - L1MA4A LINE L1 -4 6299 5737 2063 105 20 20 chrX 74017428 74017724 -88582206 - AluSx SINE Alu -16 296 1 5181 84 36 78 chrX 74017724 74017928 -88582002 - L1MA4A LINE L1 -566 5737 5526 2368 63 13 10 chrX 74017928 74018229 -88581701 - AluY SINE Alu -9 302 1 5181 84 36 78 chrX 74018229 74018291 -88581639 - L1MA4A LINE L1 -777 5526 5526 2294 84 25 0 chrX 74018291 74018575 -88581355 - AluSx SINE Alu -21 291 1 5181 84 36 78 chrX 74018575 74018624 -88581306 - L1MA4A LINE L1 -776 5527 5477 495 134 0 0 chrX 74018630 74018712 -88581218 - MER83 LTR ERV1 -70 378 297 1436 110 14 73 chrX 74018725 74019140 -88580790 - L1MA4A LINE L1 -743 5403 5105 5333 130 18 59 chrX 74019402 74020077 -88579853 - L1MB2 LINE L1 -17 6154 5453 207 0 0 0 chrX 74020077 74020100 -88579830 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5333 130 18 59 chrX 74020100 74020268 -88579662 - L1MB2 LINE L1 -718 5453 5280 2277 95 0 10 chrX 74020268 74020562 -88579368 - AluSp SINE Alu -18 295 5 5333 130 18 59 chrX 74020562 74020648 -88579282 - L1MB2 LINE L1 -891 5280 5273 2170 142 0 0 chrX 74020648 74020958 -88578972 - AluSx SINE Alu 0 312 3 5333 130 18 59 chrX 74020958 74021053 -88578877 - L1MB2 LINE L1 -898 5273 5176 1929 149 3 13 chrX 74021072 74021373 -88578557 + AluSx SINE Alu 1 298 -14 622 235 173 96 chrX 74021400 74021579 -88578351 + L1ME LINE L1 5387 5551 -570 2281 116 0 0 chrX 74021579 74021873 -88578057 - AluSx SINE Alu -16 296 3 622 235 173 96 chrX 74021873 74022042 -88577888 + L1ME LINE L1 5551 5741 -380 2414 92 0 0 chrX 74022226 74022532 -88577398 - AluSg SINE Alu -4 306 1 2172 113 0 0 chrX 74022969 74023276 -88576654 + AluSx SINE Alu 1 307 0 345 102 0 0 chrX 74023313 74023362 -88576568 + Alu SINE Alu 250 298 -3 236 248 48 67 chrX 74023780 74023885 -88576045 + MIR SINE MIR 40 142 -120 2303 102 0 7 chrX 74025003 74025306 -88574624 - AluSx SINE Alu -11 301 1 2059 124 3 3 chrX 74025392 74025683 -88574247 + AluSc SINE Alu 1 291 -18 2382 77 3 26 chrX 74026123 74026436 -88573494 - AluSp SINE Alu -7 306 1 299 337 56 11 chrX 74026547 74026636 -88573294 - L2 LINE L2 -24 3248 3156 945 224 28 9 chrX 74026682 74026896 -88573034 + AluJo SINE Alu 3 220 -92 1562 169 8 15 chrX 74027010 74027276 -88572654 + AluJo SINE Alu 28 291 -21 3029 172 82 18 chrX 74027700 74028323 -88571607 - LTR65 LTR ERV1 -4 665 3 1869 162 0 19 chrX 74028562 74028871 -88571059 + AluJb SINE Alu 1 303 -9 234 213 96 11 chrX 74028886 74028980 -88570950 - L1ME4a LINE L1 -1 6120 6019 2159 101 0 14 chrX 74029257 74029545 -88570385 + AluSq SINE Alu 1 284 -29 23 0 0 0 chrX 74029545 74029568 -88570362 + GC_rich Low_complexity Low_complexity 1 23 0 2071 116 0 35 chrX 74029643 74029786 -88570144 + AluSx SINE Alu 1 148 -164 2300 96 0 0 chrX 74029786 74030078 -88569852 + AluSx SINE Alu 1 292 -20 2071 116 0 35 chrX 74030078 74030245 -88569685 + AluSx SINE Alu 148 300 -12 1452 147 9 0 chrX 74030274 74030498 -88569432 + AluSg/x SINE Alu 84 309 -1 2191 110 3 0 chrX 74030975 74031266 -88568664 - AluSx SINE Alu -20 292 1 2058 135 0 19 chrX 74031553 74031871 -88568059 - AluSx SINE Alu 0 312 1 703 278 5 29 chrX 74031871 74032080 -88567850 - L1ME3A LINE L1 -60 6110 5907 2093 142 0 10 chrX 74032080 74032390 -88567540 + AluSx SINE Alu 1 307 -5 1405 199 11 4 chrX 74032426 74032688 -88567242 - AluJo SINE Alu -7 305 42 22 35 0 0 chrX 74032901 74032930 -88567000 + AT_rich Low_complexity Low_complexity 1 29 0 537 96 217 0 chrX 74033005 74033088 -88566842 - AluS SINE Alu -211 102 2 360 264 63 38 chrX 74033182 74033341 -88566589 + L2 LINE L2 3150 3312 -1 2257 119 0 3 chrX 74033548 74033858 -88566072 + AluSx SINE Alu 1 309 -3 30319 51 5 1 chrX 74033886 74037617 -88562313 + L1P LINE L1 9 3755 -2391 1234 34 0 7 chrX 74037625 74037771 -88562159 + L1PA4 LINE L1 6006 6150 -5 1866 131 19 38 chrX 74037927 74038241 -88561689 + AluJb SINE Alu 4 311 -1 2368 100 0 0 chrX 74038605 74038915 -88561015 - AluSx SINE Alu -2 310 1 1756 158 11 7 chrX 74039058 74039336 -88560594 - AluJb SINE Alu -20 292 14 1859 145 0 45 chrX 74039470 74039780 -88560150 + AluJb SINE Alu 1 296 -16 1819 174 3 3 chrX 74040605 74040899 -88559031 - AluJb SINE Alu -18 294 1 238 300 49 61 chrX 74040919 74041011 -88558919 - L1ME3A LINE L1 -349 5772 5680 2051 94 0 109 chrX 74041011 74041342 -88558588 - AluSp SINE Alu -18 295 1 238 300 49 61 chrX 74041342 74041512 -88558418 - L1ME3A LINE L1 -441 5680 5513 2163 116 0 26 chrX 74041513 74041653 -88558277 + AluSq SINE Alu 1 143 -170 2356 91 0 3 chrX 74041653 74041949 -88557981 + AluSg SINE Alu 1 295 -15 2163 116 0 26 chrX 74041949 74042119 -88557811 + AluSq SINE Alu 143 303 -10 2249 85 0 4 chrX 74042136 74042438 -88557492 - AluY SINE Alu 0 301 1 263 234 111 58 chrX 74042500 74042671 -88557259 - L1ME3A LINE L1 -2337 5471 5292 2357 97 0 0 chrX 74042684 74042982 -88556948 - AluSg SINE Alu -12 298 1 1725 179 0 10 chrX 74042987 74043288 -88556642 - AluJo SINE Alu -14 298 1 2134 110 13 3 chrX 74043422 74043722 -88556208 + AluSx SINE Alu 3 305 -7 1010 166 0 0 chrX 74043851 74044008 -88555922 + FRAM SINE Alu 1 154 -22 877 94 0 0 chrX 74044064 74044170 -88555760 - U6 snRNA snRNA 0 107 2 290 79 0 0 chrX 74044222 74044260 -88555670 - 5S rRNA rRNA -83 38 1 1799 153 27 13 chrX 74044539 74044839 -88555091 - AluJo SINE Alu -8 304 1 6873 107 11 47 chrX 74044919 74045356 -88554574 - L1MA1 LINE L1 0 6302 5851 2015 127 3 3 chrX 74045356 74045640 -88554290 + AluSx SINE Alu 1 284 -28 6873 107 11 47 chrX 74045640 74046208 -88553722 - L1MA1 LINE L1 -451 5851 5349 2461 51 0 17 chrX 74046208 74046502 -88553428 + AluY SINE Alu 9 297 -14 6873 107 11 47 chrX 74046502 74046826 -88553104 - L1MA1 LINE L1 -953 5349 5015 2055 124 4 0 chrX 74046826 74047101 -88552829 + AluSx SINE Alu 1 276 -36 249 152 0 0 chrX 74047120 74047166 -88552764 + LTR66 LTR ERVL 394 439 -171 232 133 0 0 chrX 74047158 74047203 -88552727 - LTR66 LTR ERVL -171 439 395 * 225 137 27 68 chrX 74047205 74047278 -88552652 - L1MCa LINE L1 -4362 2064 1995 3455 158 17 0 chrX 74047302 74047890 -88552040 - L1MA1 LINE L1 -1126 5020 4423 947 149 0 7 chrX 74047892 74048033 -88551897 + MER75 DNA T2_type 1 140 -374 261 150 0 0 chrX 74048070 74048110 -88551820 - MER75 DNA T2_type -333 181 142 2421 113 28 0 chrX 74048121 74048484 -88551446 + MER75 DNA T2_type 140 512 -2 2133 95 33 13 chrX 74048607 74048911 -88551019 - AluSg SINE Alu 0 310 1 1137 109 29 17 chrX 74048980 74049154 -88550776 - MER30 DNA MER1_type -54 176 1 2023 145 3 3 chrX 74049567 74049878 -88550052 + AluJb SINE Alu 1 311 -1 2326 72 0 0 chrX 74050143 74050496 -88549434 + AluY SINE Alu 1 311 0 2149 96 18 0 chrX 74050792 74051122 -88548808 - AluSq SINE Alu 0 335 1 1636 194 4 0 chrX 74051128 74051407 -88548523 - AluJo SINE Alu -20 292 13 361 179 0 0 chrX 74051704 74051760 -88548170 + Alu SINE Alu 238 293 -9 788 194 0 0 chrX 74051857 74051986 -88547944 + FLAM_A SINE Alu 8 136 -6 1913 141 7 3 chrX 74052874 74053171 -88546759 - AluSx SINE Alu -9 303 6 1756 138 0 4 chrX 74053218 74053471 -88546459 + AluSx SINE Alu 39 290 -22 2305 107 3 0 chrX 74053720 74054028 -88545902 + AluSg SINE Alu 1 309 -1 24 0 0 0 chrX 74055181 74055205 -88544725 + AT_rich Low_complexity Low_complexity 1 24 0 429 294 68 28 chrX 74055505 74055682 -88544248 + MIR3 SINE MIR 15 198 -10 3074 106 27 0 chrX 74055884 74056298 -88543632 - MSTA LTR MaLR -2 426 2 2046 119 7 7 chrX 74056319 74056614 -88543316 - AluSx SINE Alu -17 295 1 349 287 28 19 chrX 74056692 74056800 -88543130 - MIR3 SINE MIR -13 195 87 1541 107 65 0 chrX 74056910 74057126 -88542804 - MER30 DNA MER1_type 0 230 1 2030 158 57 47 chrX 74057287 74057352 -88542578 - MLT2A2 LTR ERVL 0 554 491 2129 109 10 13 chrX 74057352 74057655 -88542275 + AluSx SINE Alu 1 302 -10 2030 158 57 47 chrX 74057655 74058146 -88541784 - MLT2A2 LTR ERVL -63 491 1 5433 101 123 13 chrX 74058152 74059179 -88540751 + L1P3 LINE L1 1 2162 -4299 3876 39 0 0 chrX 74059179 74059614 -88540316 + L1PA7 LINE L1 5718 6152 -2 567 83 12 0 chrX 74059761 74059845 -88540085 + L1MB2 LINE L1 5401 5485 -698 997 92 15 0 chrX 74059846 74059977 -88539953 + FRAM SINE Alu 19 151 -25 4384 119 32 30 chrX 74059977 74060613 -88539317 + L1MB2 LINE L1 5475 6114 -57 980 206 6 6 chrX 74060613 74060778 -88539152 + FAM SINE Alu 1 165 -10 4384 119 32 30 chrX 74060778 74060831 -88539099 + L1MB2 LINE L1 6114 6165 -6 6930 78 6 0 chrX 74061222 74062097 -88537833 + MER41C-int LTR ERV1 5516 6395 -1361 4341 68 22 0 chrX 74062088 74062634 -88537296 + MER41C-int LTR ERV1 7199 7756 0 * 2078 81 0 0 chrX 74062634 74062895 -88537035 + MER41C LTR ERV1 1 261 -293 2117 121 0 0 chrX 74062896 74063177 -88536753 + AluSx SINE Alu 3 283 -29 438 220 0 0 chrX 74063198 74063298 -88536632 + (TA)n Simple_repeat Simple_repeat 1 100 0 1524 138 115 0 chrX 74063307 74063560 -88536370 + MER41C LTR ERV1 273 554 0 224 323 195 22 chrX 74063629 74063855 -88536075 + L2 LINE L2 2992 3256 -16 2340 107 0 3 chrX 74063866 74064176 -88535754 - AluSg SINE Alu -1 309 1 2354 94 16 0 chrX 74064558 74064865 -88535065 - AluSx SINE Alu 0 312 1 300 221 173 10 chrX 74065013 74065117 -88534813 - MIR SINE MIR -108 154 34 27 0 0 0 chrX 74065299 74065326 -88534604 + AT_rich Low_complexity Low_complexity 1 27 0 1884 155 7 23 chrX 74065351 74065661 -88534269 + AluJo SINE Alu 1 305 -7 3645 242 81 36 chrX 74065666 74066171 -88533759 + L1M4 LINE L1 23 504 -6141 2189 99 10 3 chrX 74066171 74066464 -88533466 + AluSq SINE Alu 1 295 -18 3645 242 81 36 chrX 74066464 74067302 -88532628 + L1M4 LINE L1 504 1821 -4824 2138 164 12 26 chrX 74067315 74067457 -88532473 + L1PB2 LINE L1 3371 3513 -2633 2451 57 20 7 chrX 74067457 74067757 -88532173 + AluY SINE Alu 1 304 -7 2138 164 12 26 chrX 74067757 74068040 -88531890 + L1PB2 LINE L1 3513 3790 -2356 2124 97 0 85 chrX 74068040 74068371 -88531559 + AluSg SINE Alu 1 303 -7 1425 162 21 111 chrX 74068376 74068512 -88531418 + AluYb8 SINE Alu 1 148 -170 2322 72 0 20 chrX 74068512 74068818 -88531112 + AluY SINE Alu 1 300 -11 1425 162 21 111 chrX 74068818 74069014 -88530916 + AluYb8 SINE Alu 148 303 -15 10608 104 1 0 chrX 74069015 74071281 -88528649 + L1PA4 LINE L1 3889 6153 -2 4146 144 29 16 chrX 74071281 74071678 -88528252 + L1PB2 LINE L1 4411 4802 -1349 2080 126 10 0 chrX 74071678 74071972 -88527958 + AluSx SINE Alu 2 298 -14 4146 144 29 16 chrX 74071972 74072978 -88526952 + L1PB2 LINE L1 4802 5830 -321 1936 170 3 0 chrX 74072987 74073298 -88526632 + AluJb SINE Alu 1 312 0 2326 96 3 6 chrX 74073304 74073773 -88526157 + AluSp SINE Alu 1 468 0 2323 106 9 3 chrX 74073781 74074101 -88525829 + L1PB1 LINE L1 5829 6150 -1 1646 154 101 0 chrX 74074209 74074476 -88525454 - AluJo SINE Alu -18 294 1 2161 114 0 229 chrX 74074476 74074571 -88525359 + L1MA4A LINE L1 5513 5628 -675 1971 147 7 7 chrX 74074571 74074864 -88525066 + AluJb SINE Alu 1 293 -19 2161 114 0 229 chrX 74074864 74074888 -88525042 + L1MA4A LINE L1 5628 5656 -647 2034 135 10 7 chrX 74074888 74075192 -88524738 + AluSx SINE Alu 1 305 -7 2161 114 0 229 chrX 74075192 74075276 -88524654 + L1MA4A LINE L1 5656 5758 -545 2456 81 3 0 chrX 74075276 74075586 -88524344 + AluSp SINE Alu 1 311 -2 2161 114 0 229 chrX 74075586 74075770 -88524160 + L1MA4A LINE L1 5758 5982 -321 1580 115 18 4 chrX 74075770 74075996 -88523934 + AluSx SINE Alu 3 231 -81 2161 114 0 229 chrX 74075996 74076585 -88523345 + L1MA4A LINE L1 5982 6034 -269 2198 118 23 0 chrX 74076218 74076522 -88523408 + AluSx SINE Alu 2 312 0 1537 199 0 68 chrX 74076522 74076711 -88523219 + L1PB4 LINE L1 5955 6155 -1 * 4237 215 67 66 chrX 74076704 74077398 -88522532 + L1M4c LINE L1 1144 1836 -4546 2343 90 3 3 chrX 74077398 74077697 -88522233 + AluSp SINE Alu 1 299 -14 4237 215 67 66 chrX 74077697 74078128 -88521802 + L1M4c LINE L1 1836 2265 -4117 2018 146 0 0 chrX 74078128 74078423 -88521507 + AluSx SINE Alu 1 295 -17 4237 215 67 66 chrX 74078423 74079199 -88520731 + L1M4c LINE L1 2265 3047 -3335 2120 104 0 4 chrX 74079199 74079479 -88520451 + AluSx SINE Alu 19 297 -15 269 207 17 0 chrX 74079479 74079537 -88520393 + L1M4c LINE L1 3277 3335 -3047 * 830 172 92 73 chrX 74079533 74079563 -88520367 + L1M4c LINE L1 3994 4022 -2360 2019 134 0 21 chrX 74079563 74079881 -88520049 + AluSx SINE Alu 1 312 0 830 172 92 73 chrX 74079881 74080110 -88519820 + L1M4c LINE L1 4022 4259 -2123 7343 52 7 26 chrX 74080112 74080895 -88519035 + L1PA7 LINE L1 4741 5501 -653 2433 65 3 0 chrX 74080895 74081186 -88518744 - AluY SINE Alu -6 305 14 7343 52 7 26 chrX 74081186 74081828 -88518102 + L1PA7 LINE L1 5501 6154 0 2343 63 31 0 chrX 74082638 74082924 -88517006 - AluY SINE Alu -16 295 1 1418 156 47 83 chrX 74082946 74083057 -88516873 + AluJo SINE Alu 1 115 -197 244 0 0 0 chrX 74083057 74083084 -88516846 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 2173 93 0 11 chrX 74083084 74083364 -88516566 - AluSx SINE Alu -31 281 5 1418 156 47 83 chrX 74083364 74083552 -88516378 + AluJo SINE Alu 113 290 -22 1654 133 53 59 chrX 74083552 74083889 -88516041 - L1MC2 LINE L1 -131 6213 5879 1173 142 0 11 chrX 74083896 74084079 -88515851 - AluJb SINE Alu -125 187 7 1562 160 50 3 chrX 74084086 74084368 -88515562 - L1MC2 LINE L1 -452 5892 5598 921 104 8 22 chrX 74084368 74084502 -88515428 + AluSq/x SINE Alu 1 132 -181 1929 170 105 21 chrX 74084539 74084973 -88514957 - L1MC2 LINE L1 -733 5611 5215 2265 108 0 0 chrX 74084973 74085278 -88514652 - AluSx SINE Alu -7 305 1 2157 92 0 0 chrX 74085283 74085554 -88514376 - AluSg SINE Alu -39 271 1 1929 170 105 21 chrX 74085554 74085885 -88514045 - L1MC2 LINE L1 -1132 5212 4771 322 271 16 31 chrX 74086072 74086201 -88513729 - L1MC4a LINE L1 -1863 5945 5819 233 202 0 67 chrX 74086210 74086299 -88513631 - L1MB4 LINE L1 -1 6179 6097 * 4301 198 51 34 chrX 74086274 74086381 -88513549 - L1MB2 LINE L1 -29 6271 6167 2423 60 40 0 chrX 74086381 74086680 -88513250 - AluY SINE Alu 0 311 1 1922 148 3 3 chrX 74086688 74086979 -88512951 - AluSx SINE Alu -19 293 3 1876 164 0 16 chrX 74086987 74087299 -88512631 - AluSx SINE Alu -5 307 1 4301 198 51 34 chrX 74087299 74087716 -88512214 - L1MB2 LINE L1 -145 6155 5746 2229 117 0 3 chrX 74087716 74088015 -88511915 + AluSx SINE Alu 1 298 -14 4301 198 51 34 chrX 74088015 74088298 -88511632 - L1MB2 LINE L1 -554 5746 5469 2215 74 13 32 chrX 74088298 74088608 -88511322 - AluY SINE Alu -7 304 1 4301 198 51 34 chrX 74088608 74089180 -88510750 - L1MB2 LINE L1 -831 5469 4908 2073 139 0 19 chrX 74089180 74089497 -88510433 + AluJb SINE Alu 1 311 -1 4301 198 51 34 chrX 74089497 74089979 -88509951 - L1MB2 LINE L1 -1392 4908 4369 2314 115 0 6 chrX 74089979 74090293 -88509637 - AluSx SINE Alu 0 312 1 4301 198 51 34 chrX 74090293 74090348 -88509582 - L1MB2 LINE L1 -1931 4369 4316 404 232 12 0 chrX 74090363 74090445 -88509485 - L1MC4a LINE L1 -1999 5809 5727 318 234 32 75 chrX 74090451 74090545 -88509385 - L1MC4 LINE L1 -1339 6703 6614 889 211 9 60 chrX 74090601 74090833 -88509097 - AluJo SINE Alu -92 220 1 746 219 13 0 chrX 74090834 74090985 -88508945 - L1MC4a LINE L1 -2076 5732 5580 180 111 0 0 chrX 74091028 74091055 -88508875 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1963 132 0 28 chrX 74091057 74091346 -88508584 - AluSx SINE Alu -31 281 1 2411 78 0 28 chrX 74091649 74091968 -88507962 - AluSq SINE Alu -3 310 1 660 242 0 0 chrX 74092000 74092124 -88507806 - FLAM_C SINE Alu -8 125 2 1503 159 9 57 chrX 74092241 74092556 -88507374 + AluJo SINE Alu 2 301 -11 2055 108 0 25 chrX 74092569 74092884 -88507046 + AluSq SINE Alu 6 313 0 3386 107 129 11 chrX 74093016 74093566 -88506364 + MER51A LTR ERV1 1 615 -19 1844 140 7 23 chrX 74093852 74094159 -88505771 + AluJo SINE Alu 1 302 -10 201 318 80 0 chrX 74094393 74094481 -88505449 - MIR3 SINE MIR -1 207 113 324 0 0 0 chrX 74094529 74094565 -88505365 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 171 24 0 chrX 74094636 74094677 -88505253 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 544 229 86 0 chrX 74094838 74094978 -88504952 + MIR SINE MIR 111 262 0 205 53 79 0 chrX 74095664 74095702 -88504228 + G-rich Low_complexity Low_complexity 2 42 0 618 221 65 19 chrX 74097210 74097364 -88502566 - MIR SINE MIR -88 174 14 1102 134 6 0 chrX 74098198 74098209 -88501721 - L1M1 LINE L1 -6608 957 948 2114 119 0 19 chrX 74098209 74098519 -88501411 - AluSx SINE Alu -8 304 1 1102 134 6 0 chrX 74098519 74098679 -88501251 - L1M1 LINE L1 -6617 948 785 2393 93 0 13 chrX 74098691 74099004 -88500926 - AluSx SINE Alu -3 309 1 187 200 222 0 chrX 74099832 74099877 -88500053 + MIR SINE MIR 95 149 -113 382 128 39 39 chrX 74099982 74100005 -88499925 + Charlie1 DNA MER1_type 2683 2705 -56 2379 82 3 7 chrX 74100005 74100311 -88499619 - AluY SINE Alu -6 305 1 382 128 39 39 chrX 74100311 74100365 -88499565 + Charlie1 DNA MER1_type 2704 2760 -1 379 303 78 28 chrX 74100374 74100516 -88499414 + MIR3 SINE MIR 20 168 -40 1738 149 17 10 chrX 74100523 74100812 -88499118 - AluJo SINE Alu -21 291 1 2122 107 16 19 chrX 74100843 74101153 -88498777 + AluSg1 SINE Alu 1 309 0 281 353 77 58 chrX 74101724 74102036 -88497894 - L2 LINE L2 -1 3271 2954 2210 80 0 51 chrX 74102228 74102540 -88497390 + AluY SINE Alu 1 296 -15 2414 71 0 3 chrX 74102735 74103030 -88496900 - AluSc SINE Alu -15 294 1 1037 134 0 53 chrX 74103038 74103225 -88496705 - AluJo SINE Alu -14 298 122 2226 83 24 3 chrX 74103326 74103616 -88496314 - AluSg SINE Alu -14 296 1 992 192 55 59 chrX 74103987 74104042 -88495888 + MER58A DNA MER1_type 1 55 -2365 1869 100 0 100 chrX 74104042 74104387 -88495543 - AluSx SINE Alu 0 312 13 992 192 55 59 chrX 74104387 74104550 -88495380 + MER58A DNA MER1_type 55 218 -6 325 254 55 73 chrX 74105145 74105255 -88494675 - L2 LINE L2 -14 3299 3192 2114 103 11 0 chrX 74105439 74105759 -88494171 + AluSx SINE Alu 1 323 0 1716 180 0 13 chrX 74105768 74106074 -88493856 - AluJb SINE Alu -10 302 1 1745 200 154 75 chrX 74106185 74106441 -88493489 - L1MC4 LINE L1 -13 8029 7795 1395 187 39 14 chrX 74106441 74106557 -88493373 + AluJo SINE Alu 1 113 -199 315 0 0 0 chrX 74106557 74106592 -88493338 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1395 187 39 14 chrX 74106592 74106759 -88493171 + AluJo SINE Alu 113 291 -21 1745 200 154 75 chrX 74106759 74106785 -88493145 - L1MC4 LINE L1 -247 7795 7772 2442 61 0 0 chrX 74106785 74107079 -88492851 - AluY SINE Alu -17 294 1 1745 200 154 75 chrX 74107079 74107241 -88492689 - L1MC4 LINE L1 -270 7772 7624 2180 109 10 0 chrX 74107241 74107534 -88492396 - AluSq SINE Alu -17 296 1 1745 200 154 75 chrX 74107534 74107691 -88492239 - L1MC4 LINE L1 -418 7624 7378 2215 109 0 3 chrX 74107700 74108003 -88491927 - AluSc SINE Alu -7 302 1 231 36 0 0 chrX 74108355 74108383 -88491547 + (T)n Simple_repeat Simple_repeat 1 28 0 1346 159 5 0 chrX 74108413 74108627 -88491303 + AluJo SINE Alu 85 299 -13 273 139 0 0 chrX 74108630 74108673 -88491257 - L1MB3 LINE L1 -11 6172 6130 2065 97 0 40 chrX 74108689 74108988 -88490942 + AluSc SINE Alu 1 287 -22 986 135 0 0 chrX 74108993 74109126 -88490804 - FLAM_C SINE Alu 0 133 1 2055 89 10 58 chrX 74109150 74109463 -88490467 - AluSx SINE Alu -14 298 1 982 168 112 0 chrX 74109509 74109705 -88490225 - MER20 DNA MER1_type 0 219 2 2211 89 10 3 chrX 74110088 74110380 -88489550 - AluSg SINE Alu -16 294 1 1413 204 24 15 chrX 74110745 74111073 -88488857 - L1MC4 LINE L1 -396 7646 7316 2242 112 3 0 chrX 74111074 74111369 -88488561 + AluSx SINE Alu 1 296 -16 1654 133 72 22 chrX 74111384 74111662 -88488268 - AluJb SINE Alu -20 292 1 2197 95 3 35 chrX 74111890 74112205 -88487725 + AluSg SINE Alu 1 305 -5 797 187 129 0 chrX 74112286 74112425 -88487505 - FAM SINE Alu -18 157 1 2196 114 3 0 chrX 74113781 74114078 -88485852 + AluSx SINE Alu 1 298 -14 203 232 87 14 chrX 74114107 74114176 -88485754 - MIR3 SINE MIR -7 201 128 7519 40 8 32 chrX 74114204 74115785 -88484145 + SVA Other Other 1 1386 0 328 283 81 10 chrX 74115802 74115901 -88484029 - MIR SINE MIR -73 135 30 1965 109 61 3 chrX 74116280 74116574 -88483356 - AluSq SINE Alu -2 311 1 1945 146 0 0 chrX 74117354 74117642 -88482288 - AluJb SINE Alu -22 290 3 2323 62 0 0 chrX 74117707 74117981 -88481949 + AluSg SINE Alu 1 274 -36 180 0 0 0 chrX 74117982 74118002 -88481928 + (T)n Simple_repeat Simple_repeat 1 20 0 2253 113 3 0 chrX 74118032 74118334 -88481596 + AluSq SINE Alu 1 303 -10 240 261 92 62 chrX 74118353 74118483 -88481447 - L1MC5 LINE L1 -79 7882 7749 2488 65 0 10 chrX 74119147 74119455 -88480475 - AluY SINE Alu -6 305 1 2170 194 19 7 chrX 74119496 74119925 -88480005 + L1MA9 LINE L1 5829 6262 -50 1758 173 3 0 chrX 74119937 74120220 -88479710 - AluJb SINE Alu -28 284 1 2419 49 16 29 chrX 74120847 74121155 -88478775 - L1PA2 LINE L1 -1 6154 5851 780 194 30 6 chrX 74121247 74121410 -88478520 + MER33 DNA MER1_type 1 151 -94 493 161 70 3 chrX 74121410 74121543 -88478387 + MER46A DNA MER2_type 2 187 -49 * 624 171 76 25 chrX 74121540 74121698 -88478232 + MER33 DNA MER1_type 159 324 0 2097 138 0 0 chrX 74121739 74122044 -88477886 - AluSx SINE Alu -7 305 1 22 0 0 0 chrX 74122439 74122461 -88477469 + AT_rich Low_complexity Low_complexity 1 22 0 250 177 57 0 chrX 74122538 74122597 -88477333 + L1P1 LINE L1 5763 5824 -330 * 403 248 38 0 chrX 74122566 74122671 -88477259 + L1ME4a LINE L1 5794 5902 -219 2425 71 0 7 chrX 74122707 74123001 -88476929 - AluSx SINE Alu -19 293 2 2400 80 0 3 chrX 74123069 74123369 -88476561 - AluSq SINE Alu -14 299 1 2020 93 0 0 chrX 74123544 74123802 -88476128 + AluSg SINE Alu 39 296 -14 285 238 168 0 chrX 74124141 74124242 -88475688 + MIR SINE MIR 34 151 -111 2246 122 0 0 chrX 74124390 74124685 -88475245 + AluSx SINE Alu 1 295 -17 18039 119 17 59 chrX 74124686 74130955 -88468975 + L1PA8 LINE L1 15 6165 -7 4313 153 25 9 chrX 74131150 74131841 -88468089 - MER44D DNA MER2_type -3 702 1 2860 142 41 29 chrX 74131999 74132512 -88467418 + L1PB4 LINE L1 5635 6153 -3 2317 119 0 0 chrX 74132589 74132901 -88467029 + AluSx SINE Alu 1 312 0 408 284 72 72 chrX 74132938 74133301 -88466629 - L1MC4a LINE L1 -1635 6173 5811 247 297 144 0 chrX 74133774 74133892 -88466038 + L2 LINE L2 3179 3313 0 2047 132 7 0 chrX 74133947 74134234 -88465696 - AluSx SINE Alu -23 289 1 2400 52 0 10 chrX 74134377 74134666 -88465264 + AluSc SINE Alu 1 286 -23 1047 224 16 20 chrX 74135165 74135420 -88464510 - L1PB4 LINE L1 0 6156 5903 801 128 0 0 chrX 74135417 74135534 -88464396 - L1PB4 LINE L1 -752 5548 5432 * 21 0 0 0 chrX 74135535 74135556 -88464374 + AT_rich Low_complexity Low_complexity 1 21 0 4526 99 22 56 chrX 74135556 74136285 -88463645 - L1MA3 LINE L1 -9 6296 5593 1045 156 30 0 chrX 74136285 74136452 -88463478 - AluJb SINE Alu -6 306 135 219 36 0 0 chrX 74136453 74136481 -88463449 + (TTG)n Simple_repeat Simple_repeat 1 28 0 1752 145 3 31 chrX 74136481 74136770 -88463160 - AluSx SINE Alu -31 281 1 4253 263 62 68 chrX 74136790 74137158 -88462772 - L1M2 LINE L1 -4965 1884 1515 1811 144 28 7 chrX 74137158 74137442 -88462488 - AluJo SINE Alu -22 290 1 4253 263 62 68 chrX 74137442 74138958 -88460972 - L1M2 LINE L1 -5334 1515 13 605 209 29 0 chrX 74139318 74139457 -88460473 - L1MB4 LINE L1 -29 6151 6009 1190 200 43 107 chrX 74139462 74139714 -88460216 + L1M4 LINE L1 4933 5146 -1011 2223 122 0 0 chrX 74139714 74140017 -88459913 + AluSx SINE Alu 1 303 -9 1190 200 43 107 chrX 74140017 74140204 -88459726 + L1M4 LINE L1 5146 5343 -814 21 0 0 0 chrX 74140236 74140257 -88459673 + AT_rich Low_complexity Low_complexity 1 21 0 1144 215 76 5 chrX 74140257 74140411 -88459519 - AluJb SINE Alu -24 288 112 261 0 0 0 chrX 74140411 74140440 -88459490 + (TG)n Simple_repeat Simple_repeat 2 30 0 1144 215 76 5 chrX 74140440 74140508 -88459422 - AluJb SINE Alu -200 112 50 803 150 0 15 chrX 74140511 74140644 -88459286 - FLAM_C SINE Alu -12 131 1 1032 209 64 57 chrX 74140646 74140943 -88458987 - L1MCb LINE L1 -5246 661 363 766 234 32 34 chrX 74140954 74141356 -88458574 - L1MCb LINE L1 -5940 486 42 2243 122 0 10 chrX 74141401 74141712 -88458218 - AluSq SINE Alu -5 308 1 23 0 0 0 chrX 74142016 74142039 -88457891 + AT_rich Low_complexity Low_complexity 1 23 0 189 180 0 0 chrX 74142063 74142113 -88457817 + (TA)n Simple_repeat Simple_repeat 2 51 0 2638 116 3 5 chrX 74142118 74142488 -88457442 + L1PB1 LINE L1 5782 6150 -1 2074 118 3 0 chrX 74142634 74142921 -88457009 + AluSx SINE Alu 18 305 -7 1864 181 0 0 chrX 74143123 74143427 -88456503 - AluJb SINE Alu -8 304 1 1146 117 11 6 chrX 74143733 74143913 -88456017 - L1MA2 LINE L1 -9 6295 6115 5113 145 22 31 chrX 74143974 74144040 -88455890 - L1MA2 LINE L1 -180 6124 6059 2248 99 0 0 chrX 74144040 74144333 -88455597 - AluSg SINE Alu -17 293 1 5113 145 22 31 chrX 74144333 74145446 -88454484 - L1MA2 LINE L1 -245 6059 4955 1368 151 12 99 chrX 74145447 74145627 -88454303 - AluSq SINE Alu -7 306 167 305 0 50 0 chrX 74145627 74145667 -88454263 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1368 151 12 99 chrX 74145667 74145818 -88454112 - AluSq SINE Alu -146 167 4 2322 60 14 0 chrX 74145829 74146169 -88453761 - AluY SINE Alu 0 344 1 1017 118 0 0 chrX 74146169 74146304 -88453626 - AluSq/x SINE Alu -178 135 1 408 123 0 0 chrX 74146305 74146362 -88453568 - L1MA2 LINE L1 -1184 4962 4906 2057 113 65 0 chrX 74146364 74146655 -88453275 - AluSx SINE Alu -2 310 1 2220 109 0 13 chrX 74146666 74146979 -88452951 - AluSx SINE Alu -3 309 1 357 175 0 0 chrX 74146980 74147037 -88452893 - L1MA2 LINE L1 -1184 4962 4906 1081 156 0 17 chrX 74147045 74147218 -88452712 - AluSg/x SINE Alu -9 301 132 441 0 0 0 chrX 74147222 74147271 -88452659 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2137 106 0 17 chrX 74147271 74147558 -88452372 - AluSg SINE Alu -28 282 1 1900 144 0 43 chrX 74147566 74147892 -88452038 - AluSx SINE Alu 0 312 1 9331 215 43 13 chrX 74147892 74149105 -88450825 - L1MA2 LINE L1 -1226 4920 3745 3193 165 176 105 chrX 74149105 74150057 -88449873 - LTR28 LTR ERV1 0 1020 1 9331 215 43 13 chrX 74150057 74151340 -88448590 - L1MA2 LINE L1 -2401 3745 2286 2073 130 7 7 chrX 74151525 74151826 -88448104 - AluSx SINE Alu -11 301 1 382 234 127 30 chrX 74152145 74152342 -88447588 - L1ME4a LINE L1 -182 5939 5724 2311 106 0 6 chrX 74152419 74152730 -88447200 + AluSg SINE Alu 1 309 -1 896 142 0 22 chrX 74153247 74153381 -88446549 - FLAM_C SINE Alu 0 133 3 7216 70 37 0 chrX 74153638 74154550 -88445380 - L1PA7 LINE L1 0 6154 5236 7849 42 1 1 chrX 74154848 74156328 -88443602 - L1PA5 LINE L1 -4 6150 4671 798 259 117 35 chrX 74156624 74156941 -88442989 + MARNA DNA Mariner 16 358 -228 826 172 0 15 chrX 74156948 74157082 -88442848 + FLAM_C SINE Alu 1 132 -1 1893 126 14 0 chrX 74157180 74157481 -88442449 - AluSx SINE Alu 0 305 1 315 200 0 0 chrX 74158127 74158187 -88441743 - L1ME4a LINE L1 -510 5668 5609 22187 85 6 4 chrX 74158196 74162030 -88437900 - L1PA7 LINE L1 -60 6094 2254 1105 190 13 7 chrX 74162047 74162376 -88437554 - L1ME4a LINE L1 -700 5474 5146 853 181 6 44 chrX 74162382 74162542 -88437388 + AluJo SINE Alu 2 155 -157 641 231 0 8 chrX 74162577 74162707 -88437223 + FRAM SINE Alu 31 159 -17 2514 59 0 10 chrX 74162806 74163111 -88436819 + AluY SINE Alu 1 302 -9 925 159 13 6 chrX 74163857 74164014 -88435916 - AluJb SINE Alu -9 303 146 1827 150 28 0 chrX 74164720 74165007 -88434923 - AluSx SINE Alu -13 299 5 21 0 0 0 chrX 74165062 74165083 -88434847 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chrX 74165130 74165162 -88434768 + (TA)n Simple_repeat Simple_repeat 2 33 0 1504 178 16 57 chrX 74165162 74165476 -88434454 - AluJo SINE Alu -9 303 3 1000 273 32 58 chrX 74165578 74165963 -88433967 + L1MEc LINE L1 1509 1770 -4770 2088 147 51 9 chrX 74165963 74166297 -88433633 - MER7A DNA MER2_type 0 346 1 1000 273 32 58 chrX 74166297 74166550 -88433380 + L1MEc LINE L1 1770 2028 -4512 1425 242 94 31 chrX 74166554 74167030 -88432900 - L1MC4 LINE L1 -293 7749 7244 1983 242 32 24 chrX 74167039 74167506 -88432424 - MLT1E2 LTR MaLR -7 619 149 228 246 297 17 chrX 74167548 74167666 -88432264 - MLT1E2 LTR MaLR -503 151 1 2019 237 88 36 chrX 74167666 74168288 -88431642 - L1MC4a LINE L1 -664 7144 6556 2319 117 0 0 chrX 74168288 74168597 -88431333 - AluSc SINE Alu 0 309 1 2019 237 88 36 chrX 74168597 74168610 -88431320 - L1MC4a LINE L1 -1252 6556 6545 2125 118 3 16 chrX 74168610 74168923 -88431007 - AluSx SINE Alu -3 309 1 2019 237 88 36 chrX 74168923 74169055 -88430875 - L1MC4a LINE L1 -1263 6545 6336 704 282 99 52 chrX 74169101 74169605 -88430325 + L1ME LINE L1 11 538 -5532 2052 138 0 0 chrX 74169623 74169913 -88430017 - AluSx SINE Alu -22 290 1 1579 193 15 58 chrX 74169913 74170307 -88429623 - L1M4 LINE L1 -1819 4327 3951 * 2982 208 45 51 chrX 74170302 74170501 -88429429 - L1MD2 LINE L1 0 6359 6160 297 0 0 0 chrX 74170501 74170534 -88429396 + (TG)n Simple_repeat Simple_repeat 2 34 0 2982 208 45 51 chrX 74170534 74170888 -88429042 - L1MD2 LINE L1 -199 6160 5806 1386 133 33 54 chrX 74170888 74171129 -88428801 + MER46A DNA MER2_type 1 236 0 2982 208 45 51 chrX 74171129 74171151 -88428779 - L1MD2 LINE L1 -553 5806 5785 2458 86 0 0 chrX 74171151 74171452 -88428478 - AluSx SINE Alu -11 301 1 2982 208 45 51 chrX 74171452 74171645 -88428285 - L1MD2 LINE L1 -574 5785 5593 660 250 0 0 chrX 74171674 74171802 -88428128 - AluSq/x SINE Alu -182 130 3 260 0 0 54 chrX 74171848 74171885 -88428045 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 776 172 0 0 chrX 74171889 74172017 -88427913 - L1PA14 LINE L1 -17 6144 6017 1130 128 35 15 chrX 74172018 74172221 -88427709 - L1MD2 LINE L1 -635 5607 5401 1732 139 0 87 chrX 74172235 74172544 -88427386 - AluJo SINE Alu -30 282 1 4215 179 45 43 chrX 74172559 74172781 -88427149 - L1MB7 LINE L1 -10 6174 5954 2109 133 7 3 chrX 74172781 74173090 -88426840 - AluSx SINE Alu -2 310 1 4215 179 45 43 chrX 74173090 74173713 -88426217 - L1MB7 LINE L1 -230 5954 5334 1811 164 7 7 chrX 74173713 74174006 -88425924 - AluJb SINE Alu -19 293 1 4215 179 45 43 chrX 74174006 74174078 -88425852 - L1MB7 LINE L1 -850 5334 5264 2375 160 40 0 chrX 74174078 74174504 -88425426 - L1MB3 LINE L1 -2 6181 5739 4215 179 45 43 chrX 74174504 74174549 -88425381 - L1MB7 LINE L1 -920 5264 5221 1595 172 17 24 chrX 74174549 74174845 -88425085 - AluJo SINE Alu -16 296 3 4215 179 45 43 chrX 74174845 74175189 -88424741 - L1MB7 LINE L1 -963 5221 4844 1969 144 10 7 chrX 74175189 74175487 -88424443 + AluJo SINE Alu 5 303 -9 4215 179 45 43 chrX 74175487 74175596 -88424334 - L1MB7 LINE L1 -1340 4844 4737 290 212 71 0 chrX 74175655 74175740 -88424190 - L1MB7 LINE L1 -1413 4733 4643 796 176 0 15 chrX 74175744 74175875 -88424055 - AluJb SINE Alu -181 131 3 470 226 0 0 chrX 74175875 74175977 -88423953 - L1MB7 LINE L1 -1489 4657 4556 5590 159 33 203 chrX 74175978 74178319 -88421611 + MER52A LTR ERV1 1 1755 0 339 135 0 0 chrX 74178368 74178420 -88421510 + L1MB8 LINE L1 6111 6162 -16 1914 166 0 0 chrX 74178442 74178738 -88421192 + AluJo SINE Alu 1 296 -16 1648 211 58 72 chrX 74178743 74179004 -88420926 - L1MB7 LINE L1 -1610 4536 4273 2174 99 7 0 chrX 74179004 74179308 -88420622 - AluSx SINE Alu 0 306 1 1648 211 58 72 chrX 74179308 74179382 -88420548 - L1MB7 LINE L1 -1873 4273 4199 2118 135 0 0 chrX 74179382 74179685 -88420245 - AluSx SINE Alu -9 303 1 1648 211 58 72 chrX 74179685 74179931 -88419999 - L1MB7 LINE L1 -1947 4199 3961 2358 107 0 0 chrX 74179941 74180239 -88419691 - AluSq SINE Alu -15 298 1 5747 139 23 67 chrX 74180251 74181429 -88418501 - L1MC1 LINE L1 -15 6318 5192 1899 222 64 6 chrX 74181431 74181948 -88417982 - L1MC1 LINE L1 -2389 3757 3211 1721 178 26 3 chrX 74182042 74182345 -88417585 + AluJb SINE Alu 1 310 -2 358 180 78 87 chrX 74182351 74182557 -88417373 - L1MC1 LINE L1 -2948 3198 2995 344 309 125 6 chrX 74184508 74184676 -88415254 + MER5A DNA MER1_type 2 189 0 458 266 173 28 chrX 74186133 74186347 -88413583 - MIR SINE MIR -10 252 8 317 324 169 0 chrX 74188022 74188158 -88411772 + MER5A DNA MER1_type 30 188 -1 1958 147 0 0 chrX 74188285 74188570 -88411360 + AluJb SINE Alu 5 289 -23 378 0 0 0 chrX 74188575 74188617 -88411313 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 54 0 0 chrX 74188953 74188990 -88410940 + AT_rich Low_complexity Low_complexity 1 37 0 34 24 0 0 chrX 74190071 74190112 -88409818 + AT_rich Low_complexity Low_complexity 1 41 0 280 289 101 39 chrX 74190277 74190609 -88409321 - L1ME4a LINE L1 -132 5989 5638 737 232 0 13 chrX 74190855 74191010 -88408920 + FRAM SINE Alu 20 172 -4 1696 171 29 7 chrX 74191096 74191377 -88408553 + AluJb SINE Alu 1 287 -25 438 246 169 14 chrX 74191619 74191761 -88408169 - MER5B DNA MER1_type -14 164 1 297 357 101 45 chrX 74192698 74193006 -88406924 - L2 LINE L2 -50 3222 2898 2159 98 0 3 chrX 74193225 74193510 -88406420 + AluSq SINE Alu 1 284 -29 285 293 149 34 chrX 74193979 74194187 -88405743 + MIR SINE MIR 29 260 -2 2342 93 3 7 chrX 74194285 74194595 -88405335 - AluSx SINE Alu -3 309 1 2182 111 3 0 chrX 74194724 74195031 -88404899 - AluSx SINE Alu -4 308 1 7276 118 10 12 chrX 74195115 74196434 -88403496 - L1MA1 LINE L1 -4 6298 4981 183 246 0 72 chrX 74198640 74198709 -88401221 - L2 LINE L2 -3156 158 95 48 67 0 0 chrX 74200585 74200675 -88399255 + AT_rich Low_complexity Low_complexity 1 90 0 24 0 0 0 chrX 74200902 74200926 -88399004 + AT_rich Low_complexity Low_complexity 1 24 0 863 156 0 0 chrX 74200926 74201048 -88398882 - FLAM_C SINE Alu -20 123 2 1111 235 90 6 chrX 74201205 74201516 -88398414 - MER46C DNA MER2_type 0 338 2 318 174 116 0 chrX 74201677 74201746 -88398184 - L1 LINE L1 -2848 3298 3222 2113 91 0 7 chrX 74202696 74202970 -88396960 + AluSx SINE Alu 21 292 -20 1981 116 3 51 chrX 74203225 74203536 -88396394 - AluSx SINE Alu -16 296 1 1733 206 134 18 chrX 74203739 74204180 -88395750 - L1MD2 LINE L1 -13 6346 5855 2093 93 35 0 chrX 74204333 74204622 -88395308 - AluSq SINE Alu -14 299 1 244 346 71 0 chrX 74206054 74206181 -88393749 + MIR3 SINE MIR 34 169 -39 21 57 0 0 chrX 74207070 74207105 -88392825 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chrX 74208323 74208352 -88391578 + AT_rich Low_complexity Low_complexity 1 29 0 203 200 0 0 chrX 74209674 74209709 -88390221 + A-rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chrX 74210265 74210300 -88389630 + (TA)n Simple_repeat Simple_repeat 2 36 0 2335 99 0 0 chrX 74210300 74210604 -88389326 - AluSx SINE Alu -8 304 1 2196 108 0 0 chrX 74210700 74210997 -88388933 - AluSx SINE Alu -15 297 1 1707 183 10 7 chrX 74211472 74211773 -88388157 + AluJb SINE Alu 1 302 -10 1965 124 0 52 chrX 74211852 74212159 -88387771 + AluSx SINE Alu 7 297 -15 537 275 72 19 chrX 74212225 74212403 -88387527 + MIR3 SINE MIR 7 195 -13 369 0 0 0 chrX 74214127 74214168 -88385762 + (CA)n Simple_repeat Simple_repeat 2 42 0 2147 113 17 0 chrX 74214594 74214886 -88385044 - AluSx SINE Alu -15 297 1 2100 129 30 0 chrX 74216917 74217220 -88382710 + AluSx SINE Alu 1 312 0 2357 84 3 0 chrX 74217350 74217648 -88382282 - AluSp SINE Alu -14 299 1 1949 157 0 0 chrX 74218130 74218429 -88381501 + AluJb SINE Alu 10 308 -4 2161 114 0 10 chrX 74218473 74218780 -88381150 + AluY SINE Alu 1 304 -7 235 295 16 0 chrX 74219143 74219204 -88380726 - L2 LINE L2 -23 3290 3229 503 145 12 0 chrX 74220015 74220098 -88379832 - AluS SINE Alu -229 84 1 453 178 69 0 chrX 74220117 74220218 -88379712 - L1MB7 LINE L1 -8 6176 6069 239 192 221 58 chrX 74220238 74220342 -88379588 - L1ME3A LINE L1 -23 6147 6027 2328 63 0 16 chrX 74220843 74221184 -88378746 - AluY SINE Alu 0 311 1 446 269 170 22 chrX 74221692 74221931 -88377999 + L1MC4 LINE L1 7620 7822 -220 390 57 0 0 chrX 74221931 74221984 -88377946 + (TG)n Simple_repeat Simple_repeat 2 54 0 446 269 170 22 chrX 74221984 74222108 -88377822 + L1MC4 LINE L1 7822 8037 -5 972 184 5 10 chrX 74222221 74222417 -88377513 - L1MB3 LINE L1 0 6183 5989 3732 203 69 35 chrX 74222548 74222700 -88377230 - L1MC4a LINE L1 -3 7805 7660 852 213 72 59 chrX 74222700 74222921 -88377009 + MER58A DNA MER1_type 1 224 0 3732 203 69 35 chrX 74222921 74223247 -88376683 - L1MC4a LINE L1 -148 7660 7346 1945 147 0 7 chrX 74223247 74223540 -88376390 - AluJo SINE Alu -21 291 1 3732 203 69 35 chrX 74223540 74224066 -88375864 - L1MC4a LINE L1 -462 7346 6766 29 28 0 0 chrX 74224773 74224809 -88375121 + AT_rich Low_complexity Low_complexity 1 36 0 652 268 140 22 chrX 74225168 74225396 -88374534 + MIR SINE MIR 5 259 -3 1575 204 3 15 chrX 74225774 74226108 -88373822 - L1MB7 LINE L1 -41 6143 5814 310 60 100 0 chrX 74226117 74226167 -88373763 - L1MB2 LINE L1 -2 6169 6115 3474 140 49 0 chrX 74226201 74226816 -88373114 - L1MB2 LINE L1 -41 6130 5486 240 244 26 0 chrX 74226953 74227031 -88372899 - L1P LINE L1 -744 5407 5328 21 36 0 0 chrX 74227813 74227841 -88372089 + AT_rich Low_complexity Low_complexity 1 28 0 3295 173 31 57 chrX 74227867 74228648 -88371282 - L1MB4 LINE L1 -137 6043 5284 2230 80 0 20 chrX 74228648 74228947 -88370983 - AluY SINE Alu -18 293 1 3295 173 31 57 chrX 74228947 74228993 -88370937 - L1MB4 LINE L1 -896 5284 5238 423 132 0 0 chrX 74229122 74229190 -88370740 + (GGA)n Simple_repeat Simple_repeat 2 69 0 781 167 0 0 chrX 74229372 74229504 -88370426 - FLAM_C SINE Alu -1 132 1 1971 139 0 3 chrX 74229597 74229891 -88370039 - AluSx SINE Alu -19 293 1 314 287 19 19 chrX 74230111 74230219 -88369711 - L1MC5 LINE L1 -45 7916 7809 1338 96 0 0 chrX 74230219 74230396 -88369534 - AluSq SINE Alu 0 313 137 861 227 134 57 chrX 74230397 74230579 -88369351 - L1MC5 LINE L1 -157 7804 7637 2120 117 0 10 chrX 74230579 74230877 -88369053 + AluSq SINE Alu 1 295 -18 861 227 134 57 chrX 74230877 74231200 -88368730 - L1MC5 LINE L1 -324 7637 7260 972 271 78 14 chrX 74231258 74231577 -88368353 - L1MB4 LINE L1 -1430 4716 4324 2226 115 77 6 chrX 74231577 74231917 -88368013 - THE1B LTR MaLR 0 364 1 972 271 78 14 chrX 74231917 74232098 -88367832 - L1MB4 LINE L1 -1822 4324 4156 232 293 0 0 chrX 74232165 74232223 -88367707 - L1MB4 LINE L1 -2323 3823 3766 330 26 0 0 chrX 74232238 74232277 -88367653 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 1678 192 17 0 chrX 74232277 74232579 -88367351 - AluJo SINE Alu -4 308 2 891 251 112 28 chrX 74232581 74233506 -88366424 - L1MB4 LINE L1 -2659 3487 2315 4145 224 79 38 chrX 74234029 74234525 -88365405 - L1M4 LINE L1 -2986 3658 3184 1776 152 7 20 chrX 74234525 74234827 -88365103 - AluJo SINE Alu -14 298 1 4145 224 79 38 chrX 74234827 74236029 -88363901 - L1M4 LINE L1 -3460 3184 1844 1619 178 24 27 chrX 74236029 74236327 -88363603 + AluJo SINE Alu 2 298 -14 4145 224 79 38 chrX 74236327 74236824 -88363106 - L1M4 LINE L1 -4800 1844 1369 484 315 107 71 chrX 74236842 74236878 -88363052 - L1M4 LINE L1 -5441 1101 1068 865 10 20 0 chrX 74236878 74236980 -88362950 - L1PA6 LINE L1 -5 6149 6046 484 315 107 71 chrX 74236980 74237226 -88362704 - L1M4 LINE L1 -5474 1068 832 2206 111 0 7 chrX 74237226 74237523 -88362407 + AluSx SINE Alu 2 296 -16 484 315 107 71 chrX 74237523 74237750 -88362180 - L1M4 LINE L1 -5710 832 615 1348 162 9 116 chrX 74237750 74238077 -88361853 + AluJo SINE Alu 2 293 -9 484 315 107 71 chrX 74238077 74238181 -88361749 - L1M4 LINE L1 -5927 615 516 207 0 0 0 chrX 74238181 74238204 -88361726 + (TG)n Simple_repeat Simple_repeat 2 24 0 484 315 107 71 chrX 74238204 74238481 -88361449 - L1M4 LINE L1 -6026 516 162 609 194 30 37 chrX 74238481 74238615 -88361315 - FLAM_A SINE Alu 0 133 1 484 315 107 71 chrX 74238615 74238779 -88361151 - L1M4 LINE L1 -6380 162 5 779 186 58 19 chrX 74238791 74238947 -88360983 - FRAM SINE Alu -3 173 12 245 231 0 0 chrX 74238951 74239003 -88360927 - L1MEc LINE L1 -4760 1636 1585 563 252 144 50 chrX 74239136 74239253 -88360677 - L1MEc LINE L1 -4869 1346 1241 1543 208 24 0 chrX 74239253 74239547 -88360383 - AluJo SINE Alu -11 301 1 563 252 144 50 chrX 74239547 74239864 -88360066 - L1MEc LINE L1 -4974 1241 940 2171 104 0 16 chrX 74239864 74240171 -88359759 - AluSx SINE Alu -10 302 1 563 252 144 50 chrX 74240171 74240321 -88359609 - L1MEc LINE L1 -5275 940 806 778 321 87 13 chrX 74240499 74240960 -88358970 - L1MEc LINE L1 -5867 529 35 2968 127 31 14 chrX 74241129 74241642 -88358288 - L1PA16 LINE L1 -9 6157 5636 1158 212 172 48 chrX 74241856 74242396 -88357534 - MLT1E1 LTR MaLR 0 654 1 373 312 99 7 chrX 74242500 74242641 -88357289 - MIR SINE MIR -13 249 96 516 233 23 98 chrX 74242790 74242979 -88356951 + L1MC5 LINE L1 7660 7819 -142 2139 105 0 36 chrX 74242979 74243285 -88356645 - AluSg SINE Alu -15 295 1 516 233 23 98 chrX 74243285 74243400 -88356530 + L1MC5 LINE L1 7819 7941 -20 24 53 0 0 chrX 74243458 74243496 -88356434 + AT_rich Low_complexity Low_complexity 1 38 0 2061 123 10 0 chrX 74243497 74243806 -88356124 - AluSq SINE Alu -1 312 1 635 267 29 12 chrX 74243900 74244072 -88355858 + MIR SINE MIR 3 177 -85 502 130 22 54 chrX 74244399 74244583 -88355347 + CT-rich Low_complexity Low_complexity 1 178 0 236 93 19 56 chrX 74244583 74244637 -88355293 + (TCC)n Simple_repeat Simple_repeat 1 52 0 198 140 0 53 chrX 74244644 74244701 -88355229 + (TTC)n Simple_repeat Simple_repeat 2 55 0 2471 116 34 5 chrX 74244910 74245290 -88354640 - MSTA LTR MaLR -37 391 1 246 333 0 74 chrX 74245619 74245727 -88354203 - L2 LINE L2 -40 3232 3133 2027 110 3 14 chrX 74246175 74246466 -88353464 - AluSx SINE Alu -24 288 1 508 266 104 5 chrX 74246911 74247103 -88352827 - L2 LINE L2 -4 3309 3099 205 327 19 0 chrX 74247158 74247210 -88352720 - L2 LINE L2 -348 2966 2914 234 0 0 0 chrX 74247210 74247236 -88352694 + (T)n Simple_repeat Simple_repeat 1 26 0 315 243 14 0 chrX 74247540 74247610 -88352320 - MIR3 SINE MIR -2 206 136 29 28 0 0 chrX 74247963 74247999 -88351931 + AT_rich Low_complexity Low_complexity 1 36 0 1199 140 0 0 chrX 74249305 74249484 -88350446 + AluSg/x SINE Alu 132 310 0 2013 212 163 111 chrX 74249484 74250034 -88349896 - L1MD3 LINE L1 -12 7983 7463 284 244 11 67 chrX 74250034 74250124 -88349806 - MLT1F1 LTR MaLR -448 119 35 2013 212 163 111 chrX 74250124 74250473 -88349457 - L1MD3 LINE L1 -532 7463 6732 4738 212 23 39 chrX 74250492 74251772 -88348158 - L1M4 LINE L1 -906 5240 3981 384 193 7 118 chrX 74252501 74252563 -88347367 - MLT1F LTR MaLR -5 537 496 1434 194 28 21 chrX 74252563 74252852 -88347078 + AluJo SINE Alu 2 292 -10 384 193 7 118 chrX 74252852 74252924 -88347006 - MLT1F LTR MaLR -46 496 418 1220 167 5 28 chrX 74253604 74253820 -88346110 - AluJo SINE Alu -30 282 72 314 157 45 18 chrX 74253820 74253890 -88346040 - FLAM_A SINE Alu -14 119 71 644 183 0 32 chrX 74253900 74254026 -88345904 - FLAM_A SINE Alu -11 122 1 22 35 0 0 chrX 74254047 74254076 -88345854 + AT_rich Low_complexity Low_complexity 1 29 0 2424 50 0 31 chrX 74254206 74254527 -88345403 - AluY SINE Alu 0 311 1 648 198 0 0 chrX 74254807 74254918 -88345012 - MER77 LTR ERV1 -6 599 489 10535 183 15 8 chrX 74255035 74255386 -88344544 - L1PB1 LINE L1 -8 6859 6512 666 0 0 0 chrX 74255386 74255460 -88344470 + (TA)n Simple_repeat Simple_repeat 2 75 0 10535 183 15 8 chrX 74255460 74256826 -88343104 - L1PB1 LINE L1 -355 6512 5158 234 62 0 0 chrX 74256826 74256858 -88343072 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 10535 183 15 8 chrX 74256858 74257092 -88342838 - L1PB1 LINE L1 -1709 5158 4927 2554 45 3 6 chrX 74257092 74257404 -88342526 - AluY SINE Alu 0 311 1 10535 183 15 8 chrX 74257404 74258625 -88341305 - L1PB1 LINE L1 -1940 4927 3660 569 248 132 80 chrX 74258644 74259145 -88340785 - L1PB1 LINE L1 -6091 772 246 * 832 258 50 22 chrX 74259144 74259482 -88340448 - L1MC4a LINE L1 -349 5772 5484 207 0 0 0 chrX 74259620 74259643 -88340287 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2087 105 3 7 chrX 74259878 74260164 -88339766 + AluSx SINE Alu 1 285 -27 186 43 0 0 chrX 74260167 74260190 -88339740 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 423 182 0 0 chrX 74263345 74263411 -88336519 - MER2 DNA MER2_type 0 345 280 917 201 0 0 chrX 74263440 74263594 -88336336 + FRAM SINE Alu 1 154 -12 1003 186 0 21 chrX 74263600 74263788 -88336142 + FRAM SINE Alu 1 176 0 1605 147 7 29 chrX 74263788 74264061 -88335869 - MER2 DNA MER2_type -78 267 1 237 264 64 16 chrX 74265323 74265448 -88334482 + L1ME4a LINE L1 5982 6112 -9 1769 183 0 0 chrX 74266190 74266474 -88333456 + AluJb SINE Alu 1 284 -28 2360 112 9 0 chrX 74266547 74266896 -88333034 + L1MA4A LINE L1 5941 6292 -11 4488 176 23 15 chrX 74267719 74267792 -88332138 + L1MB4 LINE L1 5196 5267 -913 1075 180 111 14 chrX 74267792 74268009 -88331921 + MER8 DNA MER2_type 2 239 0 4488 176 23 15 chrX 74268009 74268880 -88331050 + L1MB4 LINE L1 5267 6148 -32 209 32 0 32 chrX 74268880 74268911 -88331019 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1607 77 0 0 chrX 74268911 74269120 -88330810 - L1PA8 LINE L1 -24 6148 5940 382 284 39 24 chrX 74269205 74269332 -88330598 - MER5B DNA MER1_type -49 129 1 302 252 20 66 chrX 74269400 74269551 -88330379 + L1ME4a LINE L1 5975 6118 -3 1101 98 17 6 chrX 74269566 74269740 -88330190 - L1MA6 LINE L1 0 6300 6125 33 25 0 0 chrX 74269740 74269780 -88330150 + AT_rich Low_complexity Low_complexity 1 40 0 773 135 8 32 chrX 74269781 74269907 -88330023 - FLAM_C SINE Alu -17 126 4 289 258 313 0 chrX 74270085 74270267 -88329663 + L1ME LINE L1 5469 5707 -414 319 294 46 72 chrX 74270286 74270439 -88329491 - L1ME4a LINE L1 -4 6117 5969 209 203 31 16 chrX 74270478 74270542 -88329388 + (TA)n Simple_repeat Simple_repeat 2 66 0 301 257 39 10 chrX 74270595 74270708 -88329222 + L1ME LINE L1 5692 5809 -312 236 289 107 15 chrX 74270933 74271130 -88328800 - L1MEd LINE L1 -4937 1182 968 612 270 37 5 chrX 74271149 74271338 -88328592 + L1 LINE L1 4044 4238 -1908 9530 145 24 87 chrX 74271347 74271712 -88328218 - L1MA3 LINE L1 -1 6304 5918 1591 170 53 3 chrX 74271712 74271995 -88327935 + AluSx SINE Alu 4 300 -12 9530 145 24 87 chrX 74271995 74273099 -88326831 - L1MA3 LINE L1 -387 5918 4746 2165 84 42 0 chrX 74273099 74273386 -88326544 - AluYa5 SINE Alu -12 299 1 9530 145 24 87 chrX 74273386 74273752 -88326178 - L1MA3 LINE L1 -1559 4746 4359 2005 133 17 0 chrX 74273752 74274054 -88325876 - AluSx SINE Alu -5 307 1 9530 145 24 87 chrX 74274054 74274715 -88325215 - L1MA3 LINE L1 -1946 4359 4082 859 123 15 0 chrX 74274715 74274845 -88325085 - FLAM_C SINE Alu 0 133 2 9530 145 24 87 chrX 74274845 74275696 -88324234 - L1MA3 LINE L1 -2223 4082 3179 1222 189 34 10 chrX 74275715 74276011 -88323919 - L1 LINE L1 -2366 3780 3478 225 221 35 53 chrX 74276021 74276041 -88323889 - L1MA6 LINE L1 0 6300 5990 2165 103 0 3 chrX 74276041 74276332 -88323598 - AluSx SINE Alu -12 300 11 5093 147 25 27 chrX 74276336 74277795 -88322135 - L1PB4 LINE L1 -3 6153 4701 2159 103 0 35 chrX 74277811 74278121 -88321809 + AluSq SINE Alu 1 299 -14 796 136 0 0 chrX 74278123 74278263 -88321667 + L1 LINE L1 4541 4680 -1466 1294 218 115 5 chrX 74278267 74278712 -88321218 - L1 LINE L1 -2665 3481 2988 1792 219 81 25 chrX 74278712 74279179 -88320751 + L1M4 LINE L1 2780 3286 -2860 1640 183 3 22 chrX 74279179 74279496 -88320434 + AluJo SINE Alu 2 312 0 1792 219 81 25 chrX 74279496 74279594 -88320336 + L1M4 LINE L1 3286 3377 -2769 1627 162 0 46 chrX 74279992 74280295 -88319635 - AluJo SINE Alu -14 298 10 1705 220 71 11 chrX 74280383 74280861 -88319069 + Charlie4a DNA MER1_type 1 507 -1 1605 175 3 28 chrX 74281241 74281567 -88318363 - L1MD3 LINE L1 -1 7994 7677 228 35 0 0 chrX 74281874 74281903 -88318027 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chrX 74283017 74283045 -88316885 + AT_rich Low_complexity Low_complexity 1 28 0 5328 132 30 32 chrX 74283045 74284144 -88315786 - L1PA16 LINE L1 -9 6157 5083 326 111 0 0 chrX 74285199 74285244 -88314686 + tRNA-Met-e tRNA tRNA 1 45 -30 1025 284 47 38 chrX 74285727 74286371 -88313559 + L1MEd LINE L1 148 838 -5281 421 262 59 20 chrX 74286397 74286616 -88313314 + L1ME3 LINE L1 5645 5859 -305 22 56 0 0 chrX 74286900 74286936 -88312994 + AT_rich Low_complexity Low_complexity 1 36 0 252 289 22 22 chrX 74288123 74288213 -88311717 + L2 LINE L2 1868 1957 -1357 2094 152 0 0 chrX 74288235 74288545 -88311385 - AluJb SINE Alu -2 310 1 2402 71 3 0 chrX 74288661 74288956 -88310974 - AluSp SINE Alu -17 296 1 2226 99 7 10 chrX 74289055 74289357 -88310573 - AluSq SINE Alu -12 301 1 25 35 0 52 chrX 74289365 74289423 -88310507 + AT_rich Low_complexity Low_complexity 1 55 0 1943 189 64 92 chrX 74290524 74290856 -88309074 - L1M4 LINE L1 -944 5202 4862 2434 73 0 7 chrX 74290856 74291158 -88308772 - AluY SINE Alu -11 300 1 1943 189 64 92 chrX 74291158 74291529 -88308401 - L1M4 LINE L1 -1284 4862 4519 529 215 54 27 chrX 74291825 74291974 -88307956 - L1MA9 LINE L1 -30 6282 6130 1532 181 52 27 chrX 74292049 74292811 -88307119 - L1MB8 LINE L1 -9 6169 5197 771 150 15 8 chrX 74292868 74293001 -88306929 - AluJo SINE Alu -178 134 1 2297 246 83 4 chrX 74293010 74293753 -88306177 - L1MB8 LINE L1 -953 5193 4392 1955 221 50 12 chrX 74293765 74294268 -88305662 - L1MB8 LINE L1 -1887 4259 3738 434 266 135 32 chrX 74294343 74294418 -88305512 - L1ME LINE L1 -309 5812 5746 1976 147 14 0 chrX 74294418 74294710 -88305220 - AluSx SINE Alu -16 296 1 434 266 135 32 chrX 74294710 74294886 -88305044 - L1ME LINE L1 -375 5746 5535 21209 153 35 20 chrX 74295192 74295878 -88304052 - L1MA3 LINE L1 -1 7723 7049 2158 121 0 31 chrX 74295878 74296200 -88303730 - AluSx SINE Alu 0 312 1 21209 153 35 20 chrX 74296200 74297948 -88301982 - L1MA3 LINE L1 -675 7049 5329 2057 139 7 3 chrX 74297948 74298250 -88301680 - AluSx SINE Alu -8 304 2 21209 153 35 20 chrX 74298250 74299062 -88300868 - L1MA3 LINE L1 -2395 5329 4531 2339 109 3 0 chrX 74299062 74299374 -88300556 - AluSq SINE Alu 0 313 1 21209 153 35 20 chrX 74299374 74303716 -88296214 - L1MA3 LINE L1 -3193 4531 13 487 213 53 7 chrX 74303722 74303872 -88296058 - L1MB8 LINE L1 -2498 3648 3492 4061 154 28 10 chrX 74303922 74304727 -88295203 + L1MB3 LINE L1 5193 6010 -173 232 348 0 0 chrX 74304835 74304904 -88295026 + L2 LINE L2 3236 3304 -9 222 225 0 0 chrX 74305441 74305481 -88294449 + (CTA)n Simple_repeat Simple_repeat 2 41 0 1102 231 8 4 chrX 74305633 74305867 -88294063 - MIR SINE MIR -26 236 2 21 0 0 0 chrX 74305993 74306014 -88293916 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chrX 74306584 74306612 -88293318 + (CA)n Simple_repeat Simple_repeat 2 29 0 322 194 81 0 chrX 74306651 74306713 -88293217 + L2 LINE L2 3247 3313 0 26 0 0 0 chrX 74307272 74307298 -88292632 + AT_rich Low_complexity Low_complexity 1 26 0 2317 217 23 23 chrX 74307403 74307965 -88291965 - L1ME1 LINE L1 -249 5917 5356 209 206 0 16 chrX 74308062 74308069 -88291861 + (CATATA)n Simple_repeat Simple_repeat 3 9 -55 1612 142 122 10 chrX 74308069 74308380 -88291550 - MER7A DNA MER2_type -1 345 2 209 206 0 16 chrX 74308380 74308435 -88291495 + (CATATA)n Simple_repeat Simple_repeat 9 64 0 192 238 95 29 chrX 74308436 74308541 -88291389 + L3b LINE CR1 1164 1275 -308 21 95 0 0 chrX 74308692 74308755 -88291175 + AT_rich Low_complexity Low_complexity 1 63 0 1220 154 4 53 chrX 74309050 74309296 -88290634 - MER46A DNA MER2_type -2 234 1 5899 219 89 86 chrX 74309675 74311035 -88288895 - L1MD1 LINE L1 -13 6623 5268 1553 175 77 0 chrX 74311035 74311321 -88288609 + AluJo SINE Alu 1 308 -4 5899 219 89 86 chrX 74311321 74312358 -88287572 - L1MD1 LINE L1 -1368 5268 4235 758 157 0 8 chrX 74312358 74312492 -88287438 - FRAM SINE Alu -10 166 34 5899 219 89 86 chrX 74312492 74314731 -88285199 - L1MD1 LINE L1 -2401 4235 2003 2022 138 3 0 chrX 74314731 74315021 -88284909 - AluJb SINE Alu -21 291 1 5899 219 89 86 chrX 74315021 74315624 -88284306 - L1MD1 LINE L1 -4633 2003 1403 1924 153 7 0 chrX 74315624 74315918 -88284012 - AluSx SINE Alu -16 296 1 5899 219 89 86 chrX 74315918 74316807 -88283123 - L1MD1 LINE L1 -5233 1403 224 1796 176 3 0 chrX 74316807 74317096 -88282834 + AluJb SINE Alu 1 290 -22 5899 219 89 86 chrX 74317096 74317225 -88282705 - L1MD1 LINE L1 -6412 224 97 778 211 28 20 chrX 74317226 74317278 -88282652 + L1ME4a LINE L1 5128 5178 -986 2282 177 46 55 chrX 74317278 74317751 -88282179 + MLT2B1 LTR ERVL 1 470 -50 339 85 0 0 chrX 74317751 74317798 -88282132 + (CA)n Simple_repeat Simple_repeat 2 48 0 2282 177 46 55 chrX 74317798 74317849 -88282081 + MLT2B1 LTR ERVL 470 520 0 778 211 28 20 chrX 74317849 74318101 -88281829 + L1ME4a LINE L1 5178 5431 -733 2004 198 92 44 chrX 74318105 74318652 -88281278 + L1ME2 LINE L1 4857 5376 -2432 1844 156 3 10 chrX 74318652 74318941 -88280989 + AluJo SINE Alu 12 298 -14 2004 198 92 44 chrX 74318941 74319751 -88280179 + L1ME2 LINE L1 5376 7776 -32 736 249 73 12 chrX 74319762 74320007 -88279923 + L1ME4a LINE L1 5462 5721 -441 236 100 25 0 chrX 74320141 74320181 -88279749 + (TG)n Simple_repeat Simple_repeat 2 42 0 452 252 217 4 chrX 74320971 74321201 -88278729 + L1ME4a LINE L1 5749 6027 -94 410 270 22 28 chrX 74321270 74321448 -88278482 - HAL1 LINE L1 0 2507 2331 718 215 45 121 chrX 74321471 74321731 -88278199 - HAL1 LINE L1 -283 2224 2001 2332 105 7 0 chrX 74321731 74322036 -88277894 + AluSx SINE Alu 1 307 -5 718 215 45 121 chrX 74322036 74322156 -88277774 - HAL1 LINE L1 -506 2001 1873 30 69 0 0 chrX 74323273 74323331 -88276599 + AT_rich Low_complexity Low_complexity 1 58 0 470 293 38 0 chrX 74324531 74324664 -88275266 - MIR SINE MIR -114 148 11 264 289 68 10 chrX 74324953 74325074 -88274856 - MIR SINE MIR -78 130 7 204 206 0 0 chrX 74325077 74325111 -88274819 + polypyrimidine Low_complexity Low_complexity 1 34 0 900 186 0 0 chrX 74325112 74325289 -88274641 + CT-rich Low_complexity Low_complexity 1 177 0 2143 88 11 14 chrX 74325299 74325583 -88274347 - AluSg SINE Alu -25 285 3 5764 55 8 1 chrX 74325595 74326328 -88273602 - L1PA8 LINE L1 -2 6170 5433 2151 138 0 0 chrX 74327159 74327455 -88272475 - AluSx SINE Alu -16 296 1 239 345 71 0 chrX 74327488 74327601 -88272329 - L2 LINE L2 0 3313 3193 271 373 103 22 chrX 74327897 74328208 -88271722 - L2 LINE L2 -433 2881 2546 204 357 43 14 chrX 74328784 74328854 -88271076 + L2 LINE L2 3162 3233 -39 13132 39 1 3 chrX 74328854 74331225 -88268705 - L1PA5 LINE L1 -1 6153 3778 369 62 0 0 chrX 74331474 74331522 -88268408 + (CATTT)n Simple_repeat Simple_repeat 3 50 0 704 190 0 0 chrX 74331524 74331640 -88268290 - FLAM_C SINE Alu -17 116 1 2054 119 7 0 chrX 74332081 74332367 -88267563 - AluSx SINE Alu -16 296 9 383 293 218 0 chrX 74333339 74333486 -88266444 + MIR SINE MIR 84 262 0 349 276 8 79 chrX 74334442 74334569 -88265361 + L2 LINE L2 3155 3272 0 447 201 26 106 chrX 74334628 74334694 -88265236 + MER5A DNA MER1_type 2 72 -106 1782 168 31 0 chrX 74334694 74334980 -88264950 + AluJo SINE Alu 1 295 -17 447 201 26 106 chrX 74334980 74335084 -88264846 + MER5A DNA MER1_type 72 166 -12 479 238 282 10 chrX 74335145 74335351 -88264579 - MIR SINE MIR 0 262 1 293 255 284 0 chrX 74335590 74335692 -88264238 + MIR SINE MIR 2 132 -130 246 340 51 15 chrX 74335697 74335894 -88264036 - HAL1 LINE L1 -1195 1312 1109 308 269 144 19 chrX 74336231 74336335 -88263595 + MIR SINE MIR 129 245 -17 1484 8 0 0 chrX 74336409 74336616 -88263314 - L1P1 LINE L1 -717 5438 5232 3825 22 0 0 chrX 74336616 74337060 -88262870 + L1PA2 LINE L1 5710 6154 -1 268 251 204 30 chrX 74337261 74337428 -88262502 - L1MC4 LINE L1 -61 7981 7786 25664 83 6 3 chrX 74337521 74341897 -88258033 - L1PA7 LINE L1 -16 6138 1754 244 192 40 146 chrX 74341934 74342085 -88257845 - L1MC5 LINE L1 -535 7426 7292 188 296 182 0 chrX 74342154 74342242 -88257688 - MIR SINE MIR -11 251 148 2385 88 0 0 chrX 74342283 74342580 -88257350 + AluSc SINE Alu 1 297 -12 255 347 71 0 chrX 74342662 74342760 -88257170 + MIR3 SINE MIR 97 201 -7 2368 123 21 8 chrX 74342844 74343209 -88256721 - L1PB4 LINE L1 0 6156 5784 399 21 0 0 chrX 74343209 74343257 -88256673 + (TG)n Simple_repeat Simple_repeat 2 49 0 2368 123 21 8 chrX 74343257 74343274 -88256656 - L1PB4 LINE L1 -372 5784 5769 1740 111 19 8 chrX 74343274 74343527 -88256403 - L1PA11 LINE L1 -2 6172 5909 529 105 13 19 chrX 74343529 74343635 -88256295 - L1PA11 LINE L1 -372 5784 5681 813 165 0 0 chrX 74343797 74343924 -88256006 - FLAM_A SINE Alu -6 127 1 542 256 63 31 chrX 74343974 74344165 -88255765 - L2 LINE L2 -1224 2090 1894 707 248 76 38 chrX 74344166 74344341 -88255589 - MIR SINE MIR -36 226 40 939 212 47 0 chrX 74344341 74344534 -88255396 - MER3 DNA MER1_type -3 206 5 707 248 76 38 chrX 74344534 74344568 -88255362 - MIR SINE MIR -222 40 9 186 133 0 0 chrX 74344607 74344637 -88255293 + (TG)n Simple_repeat Simple_repeat 2 31 0 1004 172 18 12 chrX 74345264 74345433 -88254497 + FAM SINE Alu 1 170 -5 2036 96 3 73 chrX 74345438 74345752 -88254178 + AluSx SINE Alu 1 292 -20 336 298 60 78 chrX 74347456 74347674 -88252256 + L1MC4a LINE L1 5693 5906 -1902 16196 137 19 23 chrX 74347685 74350831 -88249099 - L1PA11 LINE L1 0 7612 4449 2169 105 0 7 chrX 74350831 74351156 -88248774 - AluSx SINE Alu 0 312 3 16196 137 19 23 chrX 74351156 74351691 -88248239 - L1PA11 LINE L1 -3163 4449 3913 4366 244 8 30 chrX 74351699 74352987 -88246943 - L1PA11 LINE L1 -4033 3551 2292 3368 249 119 40 chrX 74352985 74354272 -88245658 - L1PA11 LINE L1 -6186 1395 7 * 1887 123 51 0 chrX 74354885 74355161 -88244769 + AluSx SINE Alu 10 299 -13 381 296 56 16 chrX 74355316 74355441 -88244489 + MIR3 SINE MIR 27 156 -52 21 36 0 0 chrX 74355575 74355603 -88244327 + AT_rich Low_complexity Low_complexity 1 28 0 1656 191 4 0 chrX 74356457 74356734 -88243196 + AluJo SINE Alu 24 301 -11 21 0 0 0 chrX 74357260 74357281 -88242649 + AT_rich Low_complexity Low_complexity 1 21 0 5885 112 8 1 chrX 74361017 74361894 -88238036 - L1MA3 LINE L1 -1 7723 6841 869 146 0 0 chrX 74361903 74362026 -88237904 - FLAM_C SINE Alu -20 123 1 10883 204 24 8 chrX 74362026 74365235 -88234695 - L1MA3 LINE L1 -743 6822 3560 2344 106 6 0 chrX 74365240 74365579 -88234351 - L1PA13 LINE L1 -5 6809 6469 23 0 0 0 chrX 74365598 74365621 -88234309 + AT_rich Low_complexity Low_complexity 1 23 0 7106 154 22 6 chrX 74366094 74368121 -88231809 - L1PA13 LINE L1 -387 6432 1 2595 61 0 0 chrX 74368134 74368444 -88231486 - AluY SINE Alu -1 310 1 20344 133 73 11 chrX 74368454 74368588 -88231342 - L1MA3 LINE L1 -4003 3562 3438 2174 115 3 3 chrX 74368588 74368892 -88231038 - AluSq SINE Alu -8 305 2 20344 133 73 11 chrX 74368892 74369265 -88230665 - L1MA3 LINE L1 -4127 3438 3090 198 0 0 0 chrX 74369265 74369287 -88230643 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 20344 133 73 11 chrX 74369287 74372118 -88227812 - L1MA3 LINE L1 -4475 3090 16 258 32 0 0 chrX 74374555 74374586 -88225344 + (A)n Simple_repeat Simple_repeat 1 31 0 317 243 92 53 chrX 74376385 74376537 -88223393 + MARNA DNA Mariner 280 437 -149 405 242 24 8 chrX 74379214 74379338 -88220592 - MIR3 SINE MIR 0 208 83 1815 156 10 14 chrX 74379975 74380270 -88219660 - AluJb SINE Alu -16 296 3 201 229 0 0 chrX 74380319 74380354 -88219576 + MIR SINE MIR 87 121 -87 203 299 15 15 chrX 74380362 74380429 -88219501 - MIR SINE MIR -1 261 195 841 56 9 0 chrX 74380665 74380773 -88219157 + MSTA LTR MaLR 1 109 -319 10228 99 7 3 chrX 74380779 74383051 -88216879 - L1PA8A LINE L1 0 6131 3856 1812 177 96 3 chrX 74583052 74583408 -88016522 + MLT2D LTR ERVL 15 403 -11 1988 157 8 62 chrX 74583729 74584118 -88015812 + MLT1B LTR MaLR 1 368 -22 21 0 0 0 chrX 74585258 74585279 -88014651 + AT_rich Low_complexity Low_complexity 1 21 0 420 262 54 53 chrX 74585623 74585795 -88014135 - MIR SINE MIR -55 207 38 369 244 244 37 chrX 74585805 74586022 -88013908 + MIR SINE MIR 1 262 0 1389 297 159 18 chrX 74586844 74587867 -88012063 - L2 LINE L2 -1273 2041 874 1355 150 115 72 chrX 74589170 74589260 -88010670 - Charlie1 DNA MER1_type -9 2752 2667 2232 107 13 0 chrX 74589260 74589559 -88010371 - AluSx SINE Alu -9 303 1 1355 150 115 72 chrX 74589559 74589973 -88009957 - Charlie1 DNA MER1_type -94 2667 2184 21 0 0 0 chrX 74590449 74590470 -88009460 + AT_rich Low_complexity Low_complexity 1 21 0 1545 154 4 33 chrX 74590842 74591114 -88008816 + AluJo SINE Alu 7 270 -42 180 0 0 0 chrX 74591117 74591137 -88008793 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 682 88 0 0 chrX 74591714 74591805 -88008125 - AluSc SINE Alu -218 91 1 1746 145 12 27 chrX 74591805 74592136 -88007794 - L1MA9 LINE L1 -211 6101 5776 354 233 0 0 chrX 74592139 74592225 -88007705 + (TA)n Simple_repeat Simple_repeat 1 86 0 270 0 0 0 chrX 74592225 74592255 -88007675 + (CA)n Simple_repeat Simple_repeat 1 30 0 493 90 142 12 chrX 74592258 74592353 -88007577 - L1P4 LINE L1 -383 5780 5672 240 213 0 0 chrX 74592454 74592515 -88007415 + T-rich Low_complexity Low_complexity 1 61 0 14493 154 25 15 chrX 74592886 74598262 -88001668 + L1MA1 LINE L1 2191 7621 -100 854 102 0 0 chrX 74598364 74598491 -88001439 + L1MA1 LINE L1 7595 7721 0 26 30 0 0 chrX 74598491 74598524 -88001406 + AT_rich Low_complexity Low_complexity 1 33 0 584 328 56 0 chrX 74598531 74598781 -88001149 + L1MC/D LINE L1 5456 5719 -2089 395 267 131 6 chrX 74598948 74599124 -88000806 - L1MC/D LINE L1 -2285 5523 5326 350 105 0 0 chrX 74599205 74599262 -88000668 + L1 LINE L1 4782 4838 -1308 358 308 78 52 chrX 74599262 74599645 -88000285 - L2 LINE L2 -1120 2194 1802 2032 297 63 36 chrX 74599656 74600676 -87999254 + L2 LINE L2 2251 3313 0 304 278 80 66 chrX 74600713 74600864 -87999066 - L1ME LINE L1 -274 5847 5695 812 188 103 112 chrX 74600896 74601263 -87998667 - L1ME3A LINE L1 -9 6161 5798 1011 180 30 25 chrX 74601304 74601504 -87998426 - AluJb SINE Alu -6 306 106 345 216 27 0 chrX 74601505 74601579 -87998351 - L1ME3A LINE L1 -436 5685 5610 1241 239 133 3 chrX 74601648 74602008 -87997922 + L2 LINE L2 1273 1679 -1635 246 116 0 0 chrX 74602014 74602057 -87997873 - L1PA6 LINE L1 -3 6151 6109 2398 87 3 16 chrX 74602097 74602409 -87997521 + AluSp SINE Alu 6 313 0 204 67 0 0 chrX 74602465 74602495 -87997435 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 7561 25 2 0 chrX 74602495 74603668 -87996262 - L1PA4 LINE L1 -13 6142 4968 5350 30 0 0 chrX 74603668 74604306 -87995624 + L1PA4 LINE L1 4327 4964 -1182 319 322 8 33 chrX 74604310 74604431 -87995499 + L2 LINE L2 1764 1881 -1433 1892 280 86 47 chrX 74604487 74605539 -87994391 + L2 LINE L2 2228 3313 0 348 315 164 13 chrX 74606039 74606419 -87993511 + L1ME4a LINE L1 5304 5744 -377 1201 81 0 0 chrX 74606471 74606631 -87993299 - L1MA1 LINE L1 0 6302 6143 258 242 127 32 chrX 74606946 74607103 -87992827 + L1ME4a LINE L1 5869 6040 -81 215 59 0 29 chrX 74607117 74607151 -87992779 + (TCCCC)n Simple_repeat Simple_repeat 4 36 0 2250 73 15 0 chrX 74607156 74607430 -87992500 - AluSg SINE Alu -32 278 1 4304 92 0 24 chrX 74607986 74608608 -87991322 - L1PA12 LINE L1 -7 6161 5555 368 299 158 24 chrX 74609926 74610090 -87989840 + MER5A DNA MER1_type 4 189 0 4946 183 39 34 chrX 74610233 74611308 -87988622 - L1MA6 LINE L1 0 7719 6635 1580 154 4 19 chrX 74611308 74611567 -87988363 - AluJo SINE Alu -25 287 33 4946 183 39 34 chrX 74611567 74612170 -87987760 - L1MA6 LINE L1 -1084 6635 6037 * 4959 260 50 31 chrX 74612153 74613983 -87985947 - L1MA6 LINE L1 -4624 2941 2 446 259 8 53 chrX 74613983 74614114 -87985816 + MIR3 SINE MIR 68 192 -16 293 231 0 15 chrX 74614097 74614162 -87985768 - L2 LINE L2 -6 3266 3203 * 351 0 0 0 chrX 74614165 74614204 -87985726 + (TA)n Simple_repeat Simple_repeat 1 39 0 250 165 0 77 chrX 74614276 74614362 -87985568 + L1ME LINE L1 5519 5593 -577 1108 289 91 36 chrX 74614362 74614977 -87984953 + L2 LINE L2 2665 3309 -4 252 0 0 0 chrX 74615092 74615120 -87984810 + (CA)n Simple_repeat Simple_repeat 2 29 0 270 300 36 14 chrX 74615120 74615260 -87984670 + L1ME LINE L1 5687 5829 -333 264 314 12 35 chrX 74615479 74615565 -87984365 - MIR SINE MIR -82 126 43 22 35 0 0 chrX 74616474 74616503 -87983427 + AT_rich Low_complexity Low_complexity 1 29 0 1115 150 50 0 chrX 74617406 74617586 -87982344 - MER20 DNA MER1_type 0 219 31 2165 98 3 3 chrX 74617785 74618095 -87981835 + AluSx SINE Alu 1 310 0 326 291 60 43 chrX 74618215 74618332 -87981598 + MIR SINE MIR 7 125 -137 30852 108 15 59 chrX 74618834 74625278 -87974652 - L1PA7 LINE L1 -7 6147 12 290 65 0 22 chrX 74625441 74625487 -87974443 + (TA)n Simple_repeat Simple_repeat 2 46 0 25 31 0 0 chrX 74625498 74625530 -87974400 + AT_rich Low_complexity Low_complexity 1 32 0 2444 188 2 108 chrX 74625821 74626015 -87973915 - LTR3b LTR ERVK 0 437 224 2078 77 0 0 chrX 74626015 74626263 -87973667 - AluY SINE Alu -57 254 7 2444 188 2 108 chrX 74626263 74626557 -87973373 - LTR3b LTR ERVK -213 224 1 872 125 0 8 chrX 74627536 74627664 -87972266 - AluSq/x SINE Alu -185 127 1 237 203 116 29 chrX 74629649 74629718 -87970212 + MIR SINE MIR 57 131 -77 277 185 0 62 chrX 74629908 74629973 -87969957 - MIR3 SINE MIR -40 168 108 526 303 58 29 chrX 74629984 74630225 -87969705 - MIR SINE MIR -11 251 4 290 292 169 8 chrX 74631793 74631923 -87968007 - MIR SINE MIR 0 262 112 387 189 302 0 chrX 74631935 74632041 -87967889 - MIR SINE MIR -3 259 122 461 300 135 9 chrX 74632850 74633080 -87966850 - MIR SINE MIR -3 259 1 459 280 101 26 chrX 74633172 74633361 -87966569 - MIR SINE MIR -14 248 46 206 217 0 0 chrX 74634293 74634339 -87965591 - MIR3 SINE MIR -54 154 109 2215 124 3 0 chrX 74634443 74634749 -87965181 - AluSx SINE Alu -5 307 1 228 271 43 14 chrX 74634975 74635045 -87964885 - MIR SINE MIR -108 154 83 2391 72 7 10 chrX 74635291 74635597 -87964333 - AluSq SINE Alu -8 305 1 2096 93 11 0 chrX 74635608 74635917 -87964013 - AluSp SINE Alu 0 314 3 2216 93 38 0 chrX 74635921 74636212 -87963718 - AluSq SINE Alu -11 302 1 2119 131 13 0 chrX 74637025 74637330 -87962600 + AluSx SINE Alu 1 309 -3 674 232 93 0 chrX 74637403 74637554 -87962376 + MER5A DNA MER1_type 25 189 0 472 298 92 23 chrX 74637618 74637823 -87962107 - MIR SINE MIR -14 248 29 672 264 24 0 chrX 74637823 74637990 -87961940 + MER5B DNA MER1_type 3 173 -5 238 308 301 0 chrX 74637994 74638127 -87961803 + MER5B DNA MER1_type 6 178 0 574 216 65 65 chrX 74638410 74638595 -87961335 + MIR SINE MIR 71 255 -7 329 246 0 82 chrX 74638594 74638704 -87961226 + MIR SINE MIR 110 210 -52 * 377 277 73 43 chrX 74638842 74639004 -87960926 - MIR3 SINE MIR -30 178 11 273 209 191 55 chrX 74640403 74640513 -87959417 - MER63 DNA MER1_type -76 760 10 1546 211 123 66 chrX 74640605 74641424 -87958506 - L1M1 LINE L1 -3936 3810 2869 2001 144 120 13 chrX 74641427 74641810 -87958120 - MSTA LTR MaLR 0 428 5 661 104 0 19 chrX 74641815 74641921 -87958009 - MSTA LTR MaLR -324 104 1 8428 181 53 2 chrX 74641928 74643499 -87956431 - MSTA-int LTR MaLR 0 1651 1 1847 149 133 11 chrX 74643499 74643874 -87956056 - MSTA LTR MaLR 0 428 8 3535 240 72 50 chrX 74643898 74645412 -87954518 - L1MEc LINE L1 -4811 1585 38 488 363 62 16 chrX 74645627 74645933 -87953997 + MLT1K LTR MaLR 27 346 -242 393 165 82 21 chrX 74646013 74646110 -87953820 + MLT1K LTR MaLR 486 588 0 445 344 67 5 chrX 74646238 74646433 -87953497 - MIR SINE MIR -26 236 30 601 210 0 7 chrX 74646568 74646711 -87953219 + L1MC4 LINE L1 7761 7902 -140 246 329 0 0 chrX 74646827 74646900 -87953030 - MIR SINE MIR -108 100 28 238 308 13 0 chrX 74648557 74648648 -87951282 + A-rich Low_complexity Low_complexity 1 161 0 257 339 30 49 chrX 74649046 74649201 -87950729 + MIR3 SINE MIR 10 166 -58 2515 69 0 0 chrX 74649254 74649557 -87950373 + AluY SINE Alu 1 303 -8 549 323 86 0 chrX 74649685 74649871 -87950059 - MIR SINE MIR -3 259 58 392 260 97 26 chrX 74650321 74650475 -87949455 + MIR SINE MIR 48 212 -50 805 229 117 10 chrX 74650508 74650713 -87949217 - MIR SINE MIR 0 262 36 2382 92 3 0 chrX 74651547 74651851 -87948079 + AluSg SINE Alu 1 305 -5 261 274 32 11 chrX 74652307 74652402 -87947528 + GA-rich Low_complexity Low_complexity 5 101 0 1299 213 61 37 chrX 74653140 74653426 -87946504 - MLT1D LTR MaLR -80 425 126 1161 218 59 91 chrX 74653426 74653835 -87946095 - MSTD LTR MaLR 0 396 1 1299 213 61 37 chrX 74653835 74653923 -87946007 - MLT1D LTR MaLR -379 126 42 341 136 15 0 chrX 74653924 74653990 -87945940 + GA-rich Low_complexity Low_complexity 2 68 0 22 0 0 0 chrX 74654175 74654197 -87945733 + AT_rich Low_complexity Low_complexity 1 22 0 675 234 182 9 chrX 74654238 74654452 -87945478 - MIR SINE MIR -10 252 2 3843 132 14 37 chrX 74654870 74654990 -87944940 - Tigger1 DNA MER2_type -1 2417 2296 2315 74 3 13 chrX 74654990 74655289 -87944641 + AluY SINE Alu 1 296 -15 3843 132 14 37 chrX 74655289 74655300 -87944630 - Tigger1 DNA MER2_type -122 2296 2286 2083 146 3 0 chrX 74655300 74655601 -87944329 + AluSp SINE Alu 1 302 -11 3843 132 14 37 chrX 74655601 74656175 -87943755 - Tigger1 DNA MER2_type -132 2286 1727 3554 149 5 11 chrX 74656175 74656797 -87943133 - Tigger1 DNA MER2_type -1023 1395 778 5318 150 12 2 chrX 74656829 74657710 -87942220 - MER49 LTR ERV1 -33 890 1 4024 158 35 23 chrX 74657710 74658198 -87941732 - Tigger1 DNA MER2_type -1639 779 276 2081 101 3 14 chrX 74658198 74658505 -87941425 - AluSx SINE Alu 0 304 1 4024 158 35 23 chrX 74658505 74658785 -87941145 - Tigger1 DNA MER2_type -2142 276 1 39 50 0 0 chrX 74659055 74659115 -87940815 + AT_rich Low_complexity Low_complexity 1 60 0 312 266 55 16 chrX 74659178 74659306 -87940624 + L1PA12 LINE L1 1803 1935 -5646 3835 149 19 39 chrX 74659306 74659636 -87940294 + MER50 LTR ERV1 1 336 -398 1896 132 77 34 chrX 74659636 74659985 -87939945 + THE1B LTR MaLR 1 364 0 3835 149 19 39 chrX 74659985 74660379 -87939551 + MER50 LTR ERV1 336 711 -23 6123 137 21 8 chrX 74660422 74661432 -87938498 + MER50-int LTR ERV1 1 1023 -6182 3424 156 26 29 chrX 74661433 74662082 -87937848 + MER50-int LTR ERV1 1194 1840 -5365 3048 156 2 15 chrX 74662083 74662719 -87937211 + MER50-int LTR ERV1 1003 1481 -3399 * 3317 155 56 18 chrX 74662707 74663558 -87936372 + MER50-int LTR ERV1 2289 3062 -2524 * 6022 132 42 18 chrX 74663556 74664951 -87934979 + MER50-int LTR ERV1 3280 6205 -1000 1494 129 6 1 chrX 74664945 74665263 -87934667 + MER50-int LTR ERV1 6840 7195 -10 * 3330 157 62 16 chrX 74665265 74665945 -87933985 + MER50 LTR ERV1 1 711 -23 1141 280 26 41 chrX 74665983 74666515 -87933415 + L1PA12 LINE L1 1688 2211 -5370 1647 284 38 3 chrX 74666710 74667322 -87932608 + L1PA12 LINE L1 2182 2814 -4767 1472 263 59 2 chrX 74667289 74667867 -87932063 + L1M2 LINE L1 3611 4221 -3363 * 2047 231 28 36 chrX 74667881 74668521 -87931409 + L1P LINE L1 3334 3968 -2178 1143 174 81 0 chrX 74668525 74668760 -87931170 - LTR28 LTR ERV1 -766 254 1 5028 129 29 11 chrX 74668761 74669580 -87930350 - LTR28-int LTR ERV1 -1 7090 6257 2737 198 29 3 chrX 74669580 74670201 -87929729 - L1MD2 LINE L1 -407 5952 5316 30 93 0 0 chrX 74670457 74670543 -87929387 + AT_rich Low_complexity Low_complexity 1 86 0 282 304 63 35 chrX 74670572 74670858 -87929072 - L1MD2 LINE L1 -1314 4832 4539 1780 150 13 13 chrX 74671293 74671607 -87928323 + L1PA16 LINE L1 5844 6157 -9 327 202 71 0 chrX 74671681 74671780 -87928150 + L1M2 LINE L1 4404 4509 -1637 2679 144 4 17 chrX 74671782 74672247 -87927683 + THE1C-int LTR MaLR 1193 1651 0 357 224 69 43 chrX 74672247 74672364 -87927566 + THE1C LTR MaLR 1 131 -264 3040 212 33 9 chrX 74672364 74673158 -87926772 + L1M2 LINE L1 4524 5336 -810 1392 212 49 9 chrX 74673158 74673483 -87926447 + MSTB1 LTR MaLR 6 343 -89 1607 164 60 9 chrX 74673502 74673557 -87926373 + L1M2 LINE L1 5418 5469 -822 395 62 0 16 chrX 74673557 74673621 -87926309 + (TA)n Simple_repeat Simple_repeat 1 63 0 1607 164 60 9 chrX 74673621 74673913 -87926017 + L1M2 LINE L1 5469 5783 -508 2400 256 56 77 chrX 74673946 74675314 -87924616 + L1M1 LINE L1 16 2048 -5517 1398 173 96 34 chrX 74675314 74675667 -87924263 - THE1C LTR MaLR 0 375 1 3119 157 7 22 chrX 74675667 74676245 -87923685 - THE1C-int LTR MaLR 0 1580 1012 296 200 0 0 chrX 74676259 74676324 -87923606 - THE1C-int LTR MaLR -1116 535 471 21 0 0 0 chrX 74676325 74676346 -87923584 + AT_rich Low_complexity Low_complexity 1 21 0 5069 96 18 0 chrX 74676350 74677068 -87922862 - L1PA10 LINE L1 -2 6166 5436 954 105 195 24 chrX 74677068 74677308 -87922622 + L1P LINE L1 5152 5422 -743 * 2365 160 14 3 chrX 74677304 74677788 -87922142 - THE1C-int LTR MaLR -1154 426 2 1583 154 87 39 chrX 74677789 74677959 -87921971 - THE1C LTR MaLR 0 375 215 216 0 0 0 chrX 74677959 74677983 -87921947 + (GA)n Simple_repeat Simple_repeat 2 25 0 1583 154 87 39 chrX 74677983 74678170 -87921760 - THE1C LTR MaLR -160 215 1 4708 199 61 8 chrX 74678171 74679470 -87920460 + L1M1 LINE L1 2045 3412 -4153 1786 180 20 6 chrX 74679496 74679852 -87920078 + L1PA16 LINE L1 5797 6157 -9 204 125 0 0 chrX 74679922 74679954 -87919976 + (TA)n Simple_repeat Simple_repeat 1 32 0 1760 206 49 56 chrX 74679996 74680423 -87919507 - MSTB LTR MaLR 0 426 3 7756 205 39 10 chrX 74680425 74682028 -87917902 - MSTB-int LTR MaLR 0 1651 3 2052 181 76 2 chrX 74682030 74682427 -87917503 - MSTB LTR MaLR 0 426 1 953 196 44 64 chrX 74682446 74682742 -87917188 + L1MB8 LINE L1 5399 5688 -490 498 196 45 0 chrX 74682851 74682984 -87916946 + L1MB8 LINE L1 5657 5795 -383 186 43 0 0 chrX 74682996 74683019 -87916911 + (TA)n Simple_repeat Simple_repeat 2 24 0 10258 51 10 7 chrX 74683019 74684375 -87915555 - SVA Other Other -15 1371 13 1476 213 24 21 chrX 74684377 74684757 -87915173 + L1MB8 LINE L1 5792 6172 -6 243 204 0 0 chrX 74684800 74684865 -87915065 - L1ME LINE L1 -716 5454 5390 643 219 8 0 chrX 74684865 74684993 -87914937 + MSTB LTR MaLR 1 129 -297 848 234 60 16 chrX 74684997 74685245 -87914685 - L1MD2 LINE L1 -95 6264 6006 664 308 16 36 chrX 74685250 74685497 -87914433 - MER119 DNA MER1_type -339 244 3 492 290 84 23 chrX 74686100 74686285 -87913645 + MIR3 SINE MIR 5 204 -4 5220 147 46 10 chrX 74687523 74687968 -87911962 + LOR1-int LTR ERV1 1516 1943 -6177 186 43 0 0 chrX 74687968 74687991 -87911939 + (GAA)n Simple_repeat Simple_repeat 2 24 0 5220 147 46 10 chrX 74687991 74688562 -87911368 + LOR1-int LTR ERV1 1943 2569 -5551 4822 118 21 17 chrX 74688561 74689313 -87910617 + LOR1-int LTR ERV1 3013 3816 -4304 * 2450 71 0 0 chrX 74689313 74689610 -87910320 - AluY SINE Alu -14 297 1 4822 118 21 17 chrX 74689610 74690165 -87909765 + LOR1-int LTR ERV1 3816 4367 -3753 860 260 46 0 chrX 74690169 74690492 -87909438 + L1MA9 LINE L1 2928 3265 -2881 1116 308 37 36 chrX 74690499 74691096 -87908834 + L1PB4 LINE L1 10 1158 -6427 336 341 89 71 chrX 74691768 74692093 -87907837 + L1PB4 LINE L1 1529 1859 -5726 929 216 97 22 chrX 74692196 74692465 -87907465 - LTR19C LTR ERV1 0 779 491 * 940 234 10 94 chrX 74692458 74692756 -87907174 - LTR9 LTR ERV1 -231 381 109 4182 39 0 0 chrX 74692756 74693239 -87906691 + MER11D LTR ERVK 1 483 -414 653 74 0 0 chrX 74693252 74693333 -87906597 + MER11D LTR ERVK 817 897 0 496 161 17 68 chrX 74693333 74693451 -87906479 - LTR9 LTR ERV1 -498 114 3 9986 227 33 13 chrX 74693451 74697082 -87902848 + L1PB4 LINE L1 3893 7594 0 8746 192 29 13 chrX 74697085 74698056 -87901874 + L1MA9 LINE L1 3260 4214 -2098 1998 80 84 0 chrX 74698056 74698342 -87901588 + AluY SINE Alu 1 310 -1 8746 192 29 13 chrX 74698342 74700373 -87899557 + L1MA9 LINE L1 4214 6311 -1 237 213 67 27 chrX 74700484 74700559 -87899371 - L1MC/D LINE L1 -1894 5914 5837 855 297 35 28 chrX 74700638 74701058 -87898872 - L1MC/D LINE L1 -747 5399 5194 27 73 0 0 chrX 74701069 74701124 -87898806 + AT_rich Low_complexity Low_complexity 1 55 0 27 49 0 0 chrX 74701217 74701258 -87898672 + AT_rich Low_complexity Low_complexity 1 41 0 4338 210 29 35 chrX 74701462 74702242 -87897688 + L1MC/D LINE L1 4154 4937 -1424 6963 48 23 2 chrX 74702242 74703081 -87896849 - L1PA7 LINE L1 -4 6150 5283 198 0 0 0 chrX 74703081 74703103 -87896827 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6963 48 23 2 chrX 74703103 74703610 -87896320 - L1PA7 LINE L1 -871 5283 4788 4338 210 29 35 chrX 74703610 74703869 -87896061 + L1MC/D LINE L1 4937 5196 -1165 258 32 0 0 chrX 74703869 74703900 -87896030 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4338 210 29 35 chrX 74703900 74704355 -87895575 + L1MC/D LINE L1 5196 5640 -721 225 0 0 0 chrX 74704355 74704380 -87895550 + (TG)n Simple_repeat Simple_repeat 2 26 0 4338 210 29 35 chrX 74704380 74704428 -87895502 + L1MC/D LINE L1 5640 5687 -674 295 101 63 0 chrX 74704430 74704509 -87895421 + (TA)n Simple_repeat Simple_repeat 2 85 0 2427 210 72 7 chrX 74704511 74705050 -87894880 + L1MA9 LINE L1 5659 6244 -68 561 68 0 0 chrX 74705050 74705124 -87894806 + (TA)n Simple_repeat Simple_repeat 1 74 0 2427 210 72 7 chrX 74705124 74705198 -87894732 + L1MA9 LINE L1 6244 6312 0 753 292 14 4 chrX 74705200 74705477 -87894453 + L1MB2 LINE L1 2271 2550 -3596 2314 232 35 22 chrX 74705481 74706344 -87893586 + L1MB2 LINE L1 4613 5491 -692 * 19113 87 3 6 chrX 74706343 74709102 -87890828 - L1P3 LINE L1 -1095 5051 2300 2234 98 18 0 chrX 74709109 74709541 -87890389 + L1P3 LINE L1 5036 5476 -678 8272 29 1 1 chrX 74709550 74711312 -87888618 + L1PA3 LINE L1 4391 6152 -3 255 118 0 39 chrX 74711316 74711367 -87888563 + L1MB2 LINE L1 6115 6163 -8 378 0 0 0 chrX 74711371 74711413 -87888517 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 374 202 64 0 chrX 74711423 74711532 -87888398 + L1ME4a LINE L1 5798 5913 -208 5446 65 0 1 chrX 74711657 74712351 -87887579 + L1PA7 LINE L1 5461 6153 -1 1856 219 33 15 chrX 74712352 74712955 -87886975 + L1MB2 LINE L1 5477 6169 -2 2196 127 0 0 chrX 74712965 74713272 -87886658 + AluSx SINE Alu 1 307 -5 307 269 62 31 chrX 74713326 74713456 -87886474 + L1MC4 LINE L1 7905 8038 -4 1561 225 62 32 chrX 74713472 74713851 -87886079 + L1MEc LINE L1 1731 2070 -4145 1555 121 22 0 chrX 74713851 74714083 -87885847 + L1PA11 LINE L1 5938 6174 0 1561 225 62 32 chrX 74714083 74714345 -87885585 + L1MEc LINE L1 2070 2323 -3892 420 230 8 16 chrX 74714346 74714472 -87885458 - Zaphod DNA AcHobo -1084 2947 2823 2035 181 25 20 chrX 74714527 74714926 -87885004 - MSTB1 LTR MaLR -31 401 1 2667 239 84 30 chrX 74714926 74715844 -87884086 - L1MC4a LINE L1 -10 7775 6801 189 0 0 0 chrX 74715844 74715865 -87884065 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2667 239 84 30 chrX 74715865 74716039 -87883891 - L1MC4a LINE L1 -984 6801 6638 2291 195 12 34 chrX 74716039 74716536 -87883394 - MER66B LTR ERV1 0 486 1 13306 130 31 27 chrX 74716536 74718658 -87881272 - MER66B-int LTR ERV1 0 6676 4548 2754 337 42 29 chrX 74718702 74720625 -87879305 - MER66A-int LTR ERV1 -2122 5634 3687 9280 182 36 19 chrX 74720966 74722795 -87877135 - MER66A-int LTR ERV1 -3834 2842 1211 708 228 56 6 chrX 74722885 74723047 -87876883 - MER66A-int LTR ERV1 -3573 3103 2934 2578 149 84 21 chrX 74723187 74723709 -87876221 - LTR25 LTR ERV1 0 794 240 354 159 29 0 chrX 74723727 74723796 -87876134 - LTR25 LTR ERV1 -501 293 223 229 250 0 0 chrX 74723847 74723907 -87876023 - L1 LINE L1 -1607 4539 4480 * 3395 162 36 12 chrX 74723898 74724619 -87875311 + L1PB1 LINE L1 4587 5337 -814 198 0 0 0 chrX 74724619 74724641 -87875289 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3395 162 36 12 chrX 74724641 74725091 -87874839 + L1PB1 LINE L1 5337 5775 -376 267 93 0 0 chrX 74725093 74725136 -87874794 + (TA)n Simple_repeat Simple_repeat 2 44 0 707 195 142 52 chrX 74725220 74725613 -87874317 + LTR30 LTR ERV1 238 596 0 2379 116 0 6 chrX 74725640 74725995 -87873935 + L1PB1 LINE L1 5798 6150 -1 4381 198 54 38 chrX 74726070 74727085 -87872845 - MER66A-int LTR ERV1 -5635 1041 11 803 153 20 89 chrX 74727104 74727307 -87872623 - MER66A LTR ERV1 0 478 290 687 207 52 0 chrX 74727307 74727481 -87872449 - L1MC4a LINE L1 -1275 6533 6351 * 1940 173 68 12 chrX 74727478 74727906 -87872024 - L1MC3 LINE L1 -8 7777 7326 1218 224 45 10 chrX 74727938 74728246 -87871684 + MLT2D LTR ERVL 82 400 -14 1335 290 41 10 chrX 74728261 74728842 -87871088 + ERVL-A2 LTR ERVL 2 617 -5058 1058 201 14 0 chrX 74728834 74729043 -87870887 + ERVL-A2 LTR ERVL 2356 2567 -3197 * 6947 33 0 0 chrX 74729056 74729879 -87870051 - L1PA4 LINE L1 -3 6152 5330 1487 43 0 0 chrX 74729895 74730080 -87869850 - L1PA4 LINE L1 -3454 2692 2508 * 2279 178 2 2 chrX 74730067 74730505 -87869425 - L1P LINE L1 -862 5284 4847 * 9438 172 43 8 chrX 74730503 74732347 -87867583 + L1P LINE L1 2951 4860 -1286 883 204 22 36 chrX 74732347 74732572 -87867358 + ERVL-A2 LTR ERVL 5464 5685 -79 610 224 106 47 chrX 74732572 74732808 -87867122 + MLT2B1 LTR ERVL 172 483 -37 447 92 0 0 chrX 74732808 74732873 -87867057 + (CA)n Simple_repeat Simple_repeat 2 66 0 610 224 106 47 chrX 74732873 74732914 -87867016 + MLT2B1 LTR ERVL 483 520 0 2044 239 88 35 chrX 74732917 74733849 -87866081 - L1MC3 LINE L1 -462 7323 6366 2098 180 38 31 chrX 74733852 74734395 -87865535 + MLT2A2 LTR ERVL 1 554 0 619 210 7 7 chrX 74734447 74734585 -87865345 - L1MC3 LINE L1 -1494 6291 6154 5265 188 21 8 chrX 74734589 74736193 -87863737 - L1MA4A LINE L1 0 7005 5374 1948 161 36 15 chrX 74736193 74736523 -87863407 - MER1B DNA MER1_type 0 337 1 5265 188 21 8 chrX 74736523 74736654 -87863276 - L1MA4A LINE L1 -1631 5374 5246 * 5738 115 9 6 chrX 74736649 74737510 -87862420 + L1PA10 LINE L1 5301 6164 -4 4745 201 32 37 chrX 74737532 74738299 -87861631 - L1MA4A LINE L1 -1603 5245 4485 2167 117 0 3 chrX 74738299 74738590 -87861340 - AluSx SINE Alu -22 290 1 4745 201 32 37 chrX 74738590 74739208 -87860722 - L1MA4A LINE L1 -2363 4485 3866 3891 111 17 69 chrX 74739209 74739902 -87860028 - L1PA12 LINE L1 -4 6164 5508 731 350 23 15 chrX 74739919 74740185 -87859745 - Zaphod DNA AcHobo -3674 357 90 345 24 0 0 chrX 74740185 74740227 -87859703 + (TG)n Simple_repeat Simple_repeat 1 42 0 291 71 0 0 chrX 74740227 74740269 -87859661 + (GA)n Simple_repeat Simple_repeat 2 43 0 328 320 51 108 chrX 74740337 74740653 -87859277 - HAL1 LINE L1 -2191 316 19 509 284 36 30 chrX 74740796 74741131 -87858799 - L1ME LINE L1 -4982 1088 752 288 253 0 12 chrX 74741138 74741221 -87858709 - Charlie1 DNA MER1_type -41 2720 2639 360 288 254 0 chrX 74741256 74741374 -87858556 - Charlie1 DNA MER1_type -2572 189 42 44269 41 0 1 chrX 74741400 74747556 -87852374 + L1PA3 LINE L1 2 6152 -3 359 241 91 59 chrX 74747586 74747806 -87852124 - L1ME LINE L1 -5310 760 534 1219 182 50 35 chrX 74747809 74748205 -87851725 - L1MA4A LINE L1 -4713 2136 1735 * 1348 202 63 12 chrX 74748195 74748526 -87851404 - L1MA6 LINE L1 -191 6109 5762 867 127 13 13 chrX 74748536 74748686 -87851244 - L1PB1 LINE L1 -3 6148 5999 4694 198 14 4 chrX 74748689 74749688 -87850242 + L1 LINE L1 3960 4968 -1178 368 200 0 82 chrX 74749772 74749882 -87850048 + MER61E LTR ERV1 1 101 -468 236 222 143 0 chrX 74750043 74750106 -87849824 + MER51A LTR ERV1 209 280 -354 * 1532 196 78 17 chrX 74750077 74750435 -87849495 + LTR25 LTR ERV1 415 794 0 2187 123 3 0 chrX 74750891 74751199 -87848731 + AluSp SINE Alu 1 309 -4 2176 121 3 3 chrX 74751217 74751522 -87848408 + AluSq SINE Alu 7 311 -2 248 348 25 8 chrX 74751718 74752080 -87847850 - L1M4 LINE L1 -3636 2510 2143 434 238 175 14 chrX 74752157 74752300 -87847630 - MER4A LTR ERV1 0 465 300 1997 131 11 65 chrX 74752340 74752734 -87847196 - MER4A LTR ERV1 -236 353 5 435 305 52 49 chrX 74752997 74753463 -87846467 - HAL1b LINE L1 -622 726 260 676 319 67 51 chrX 74754674 74755107 -87844823 + L2 LINE L2 2531 2970 -344 21 0 0 0 chrX 74755209 74755230 -87844700 + AT_rich Low_complexity Low_complexity 1 21 0 606 291 70 27 chrX 74755361 74755691 -87844239 + L1ME LINE L1 21 364 -5706 422 18 18 0 chrX 74755692 74755747 -87844183 + (CA)n Simple_repeat Simple_repeat 2 57 0 831 261 60 54 chrX 74755750 74756104 -87843826 + L1ME LINE L1 434 754 -5316 346 277 252 0 chrX 74756104 74756223 -87843707 + Charlie1 DNA MER1_type 42 190 -2571 264 263 42 11 chrX 74756244 74756339 -87843591 + Charlie1 DNA MER1_type 2623 2720 -41 417 201 15 168 chrX 74756346 74756744 -87843186 + L1ME LINE L1 752 1088 -4982 858 267 168 79 chrX 74756745 74757641 -87842289 + HAL1 LINE L1 1544 2507 0 229 293 23 46 chrX 74757632 74757806 -87842124 + HAL1b LINE L1 190 359 -989 * 511 221 80 0 chrX 74757805 74757918 -87842012 + L1PB4 LINE L1 6034 6155 -1 463 297 132 14 chrX 74758218 74758437 -87841493 + MIR SINE MIR 10 254 -8 332 250 106 19 chrX 74758564 74758668 -87841262 - MIR SINE MIR -76 132 20 745 242 16 5 chrX 74759815 74760001 -87839929 - MER5A DNA MER1_type -1 188 1 26 0 0 0 chrX 74760185 74760211 -87839719 + AT_rich Low_complexity Low_complexity 1 26 0 2510 53 0 7 chrX 74760276 74760577 -87839353 - AluY SINE Alu -12 299 1 435 292 124 0 chrX 74761967 74762104 -87837826 + L2 LINE L2 3160 3313 0 183 42 0 0 chrX 74763003 74763027 -87836903 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1234 305 84 29 chrX 74763554 74764449 -87835481 - L2 LINE L2 0 3313 2375 200 312 39 13 chrX 74764522 74764599 -87835331 + MIR SINE MIR 75 153 -109 2681 184 40 27 chrX 74764602 74765150 -87834780 - LTR1 LTR ERV1 -215 570 16 271 283 57 68 chrX 74765174 74765351 -87834579 + MER112 DNA MER1_type 41 215 -45 200 250 0 0 chrX 74765714 74765758 -87834172 + MIR SINE MIR 59 102 -160 303 277 11 0 chrX 74765885 74765979 -87833951 - MIR SINE MIR 0 262 168 1105 188 0 57 chrX 74765981 74766210 -87833720 + LTR1 LTR ERV1 562 777 -8 1681 166 3 0 chrX 74766262 74766570 -87833360 - L1MA5 LINE L1 -9 6291 5983 407 196 76 0 chrX 74766571 74766663 -87833267 + L1 LINE L1 5007 5105 -1041 259 353 39 20 chrX 74766665 74766767 -87833163 - MIR SINE MIR -67 141 38 7048 68 7 0 chrX 74767029 74768731 -87831199 + L1PA6 LINE L1 4436 6150 -4 849 209 10 8 chrX 74768772 74768960 -87830970 - MLT1F LTR MaLR 0 543 366 1228 300 60 8 chrX 74769109 74769489 -87830441 + MLT1G LTR MaLR 42 441 -149 1980 174 69 28 chrX 74769506 74769943 -87829987 - LTR65 LTR ERV1 -208 461 7 10609 191 57 15 chrX 74770149 74773614 -87826316 + L1PB2 LINE L1 2539 6147 -4 5084 177 11 0 chrX 74773626 74774618 -87825312 + L1MA2 LINE L1 4314 5316 -830 5295 93 13 14 chrX 74774637 74775234 -87824696 + L1MA2 LINE L1 5510 6107 -197 1941 144 172 8 chrX 74775234 74775601 -87824329 - MSTA LTR MaLR -1 427 1 5295 93 13 14 chrX 74775601 74775799 -87824131 + L1MA2 LINE L1 6107 6304 0 572 319 21 5 chrX 74776519 74776707 -87823223 - MIR SINE MIR -7 255 65 1035 251 57 20 chrX 74776994 74777293 -87822637 - L2 LINE L2 0 3313 3004 379 355 27 27 chrX 74777392 74777612 -87822318 - MIR SINE MIR -40 222 3 428 299 6 30 chrX 74777766 74777930 -87822000 - MIR3 SINE MIR -17 191 32 314 325 45 32 chrX 74778327 74778481 -87821449 + MIR3 SINE MIR 53 208 0 * 1413 224 33 33 chrX 74778468 74778816 -87821114 + L2 LINE L2 2316 2666 -648 2096 121 27 0 chrX 74778816 74779114 -87820816 - AluSq SINE Alu -7 306 1 1413 224 33 33 chrX 74779114 74779157 -87820773 + L2 LINE L2 2665 2707 -607 227 315 74 0 chrX 74779332 74779440 -87820490 - L1ME LINE L1 -519 5602 5487 2262 79 6 29 chrX 74779458 74779774 -87820156 + AluY SINE Alu 1 309 -2 207 288 0 14 chrX 74779893 74779966 -87819964 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 225 221 96 39 chrX 74779981 74780085 -87819845 + L1ME4a LINE L1 5995 6104 -17 1738 160 0 14 chrX 74780156 74780444 -87819486 - AluJb SINE Alu -26 286 3 397 256 0 11 chrX 74780631 74780721 -87819209 - MER6 DNA MER2_type -259 606 258 2531 151 24 11 chrX 74780722 74781185 -87818745 + MER6 DNA MER2_type 336 804 -61 261 57 0 0 chrX 74781188 74781223 -87818707 + (TA)n Simple_repeat Simple_repeat 1 35 0 1812 178 0 7 chrX 74781339 74781642 -87818288 - AluJb SINE Alu -4 308 8 504 271 0 152 chrX 74781977 74782139 -87817791 + L2 LINE L2 2764 2878 -436 842 147 0 0 chrX 74782139 74782282 -87817648 - L1MA10 LINE L1 -7 6327 6185 504 271 0 152 chrX 74782282 74782363 -87817567 + L2 LINE L2 2878 2970 -344 * 962 236 0 0 chrX 74782359 74782541 -87817389 + MER5A DNA MER1_type 8 189 0 25 0 0 0 chrX 74782554 74782579 -87817351 + AT_rich Low_complexity Low_complexity 1 25 0 2121 135 39 36 chrX 74782865 74783228 -87816702 - THE1B LTR MaLR 0 364 1 9717 94 5 34 chrX 74783228 74784854 -87815076 - THE1B-int LTR MaLR 0 1580 1 2122 140 33 33 chrX 74784854 74785218 -87814712 - THE1B LTR MaLR 0 364 1 31 44 0 0 chrX 74786513 74786558 -87813372 + AT_rich Low_complexity Low_complexity 1 45 0 34 55 0 0 chrX 74787973 74788028 -87811902 + AT_rich Low_complexity Low_complexity 1 55 0 241 225 50 38 chrX 74788822 74788902 -87811028 - MER89 LTR ERV1 -29 530 450 372 88 0 0 chrX 74789354 74789411 -87810519 + (CA)n Simple_repeat Simple_repeat 2 58 0 1340 194 33 15 chrX 74789532 74789805 -87810125 + AluJb SINE Alu 1 278 -34 312 27 0 0 chrX 74789805 74789842 -87810088 + (TC)n Simple_repeat Simple_repeat 2 38 0 755 317 4 25 chrX 74790526 74790766 -87809164 + MIR SINE MIR 1 235 -27 972 92 35 58 chrX 74790766 74790939 -87808991 + Tigger2a DNA MER2_type 1 169 -265 571 186 21 0 chrX 74790936 74791033 -87808897 + Tigger2a DNA MER2_type 346 444 0 * 197 225 0 0 chrX 74791085 74791125 -87808805 - MIR SINE MIR 0 262 223 4290 100 2 3 chrX 74791532 74792133 -87807797 - MER4A LTR ERV1 0 600 1 235 283 104 28 chrX 74792198 74792304 -87807626 - L2 LINE L2 0 3272 3159 3567 119 21 59 chrX 74792989 74793613 -87806317 - MER4A LTR ERV1 0 600 1 17296 175 99 91 chrX 74793618 74794631 -87805299 - MER4A-int LTR ERV1 -2 6596 5592 1268 127 85 5 chrX 74794631 74794843 -87805087 + MER30 DNA MER1_type 2 230 0 17296 175 99 91 chrX 74794843 74797557 -87802373 - MER4A-int LTR ERV1 -1006 5592 2900 594 75 0 0 chrX 74797557 74797637 -87802293 + MADE1 DNA Mariner 1 80 0 17296 175 99 91 chrX 74797637 74799454 -87800476 - MER4A-int LTR ERV1 -3698 2900 1098 1993 142 3 3 chrX 74799454 74799757 -87800173 - AluSx SINE Alu -8 304 2 182 37 37 0 chrX 74799757 74799784 -87800146 + (CA)n Simple_repeat Simple_repeat 1 28 0 17296 175 99 91 chrX 74799784 74800096 -87799834 - MER4A-int LTR ERV1 -5500 1098 790 1983 123 4 0 chrX 74800096 74800395 -87799535 + AluSx SINE Alu 5 304 0 17296 175 99 91 chrX 74800395 74801079 -87798851 - MER4A-int LTR ERV1 -5808 790 1 3076 124 124 53 chrX 74801082 74801225 -87798705 - MER4A LTR ERV1 0 664 533 13721 54 6 0 chrX 74801225 74803744 -87796186 - L1PA6 LINE L1 -2 6152 3622 3076 124 124 53 chrX 74803744 74804220 -87795710 - MER4A LTR ERV1 -131 533 1 342 318 114 0 chrX 74804314 74804515 -87795415 + MIR SINE MIR 31 254 -8 332 164 15 0 chrX 74805016 74805083 -87794847 + GA-rich Low_complexity Low_complexity 4 71 0 21 36 0 0 chrX 74805242 74805270 -87794660 + AT_rich Low_complexity Low_complexity 1 28 0 890 229 23 74 chrX 74805270 74805528 -87794402 - MIR SINE MIR -16 246 2 321 330 68 25 chrX 74805669 74805787 -87794143 - L2 LINE L2 -1 3271 3149 285 235 59 24 chrX 74805854 74805939 -87793991 + L2 LINE L2 3184 3271 -1 25 0 0 0 chrX 74806431 74806456 -87793474 + AT_rich Low_complexity Low_complexity 1 25 0 2543 59 0 0 chrX 74806701 74807008 -87792922 - AluY SINE Alu -4 307 1 6580 141 35 34 chrX 74807307 74808275 -87791655 - Tigger3b DNA MER2_type -1797 1231 259 2148 100 11 0 chrX 74808275 74808581 -87791349 - AluSc SINE Alu 0 309 1 6580 141 35 34 chrX 74808581 74808840 -87791090 - Tigger3b DNA MER2_type -2769 259 2 243 0 0 0 chrX 74808853 74808880 -87791050 + (TG)n Simple_repeat Simple_repeat 2 28 0 1704 91 26 34 chrX 74809223 74809488 -87790442 - L1MA1 LINE L1 -252 6050 5788 1073 93 0 37 chrX 74809488 74809645 -87790285 + L1MA1 LINE L1 6147 6302 0 383 253 133 13 chrX 74809713 74809871 -87790059 - MIR SINE MIR -49 213 37 309 267 25 50 chrX 74810437 74810557 -87789373 + MIR3 SINE MIR 89 205 -3 1274 94 5 25 chrX 74810930 74811133 -87788797 + L1PA13 LINE L1 5946 6144 -19 949 76 0 0 chrX 74812432 74812550 -87787380 + AluSg/x SINE Alu 186 303 -9 347 295 51 8 chrX 74813332 74813517 -87786413 + MIR SINE MIR 23 262 0 1825 158 11 60 chrX 74813685 74814051 -87785879 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chrX 74814184 74814205 -87785725 + AT_rich Low_complexity Low_complexity 1 21 0 206 355 0 0 chrX 74815150 74815212 -87784718 - L2 LINE L2 0 3272 3211 294 333 23 15 chrX 74815518 74815650 -87784280 - MER109 Unknown Unknown -455 1977 1845 2194 105 3 0 chrX 74815669 74815955 -87783975 + AluSg SINE Alu 1 287 -23 4242 229 33 46 chrX 74816114 74817601 -87782329 + L1M4 LINE L1 24 1700 -5125 2162 109 0 35 chrX 74817601 74817913 -87782017 + AluSx SINE Alu 1 301 -11 4242 229 33 46 chrX 74817913 74818334 -87781596 + L1M4 LINE L1 1700 2125 -4700 1300 181 145 0 chrX 74818338 74818587 -87781343 + AluJb SINE Alu 1 285 -27 385 256 0 26 chrX 74818609 74818726 -87781204 + L1M4 LINE L1 1968 2081 -4565 4854 179 22 0 chrX 74818772 74819835 -87780095 - L1PA16 LINE L1 -3 6163 5086 3085 214 10 13 chrX 74819837 74820535 -87779395 + L1P LINE L1 3319 4014 -2132 * 6777 273 74 23 chrX 74820532 74822686 -87777244 + L1PA15 LINE L1 20 2062 -5522 7385 40 5 0 chrX 74822686 74824314 -87775616 - L1PA5 LINE L1 0 6154 4523 6777 273 74 23 chrX 74824314 74826084 -87773846 + L1PA15 LINE L1 2062 4160 -3424 300 77 0 0 chrX 74826095 74826134 -87773796 + THE1C LTR MaLR 1 39 -325 * 857 174 71 58 chrX 74826133 74826357 -87773573 + THE1C LTR MaLR 149 375 0 4578 168 95 10 chrX 74826357 74827715 -87772215 + THE1C-int LTR MaLR 1 1580 0 2116 139 47 8 chrX 74827717 74828076 -87771854 + THE1C LTR MaLR 3 375 0 10060 205 38 4 chrX 74828077 74831403 -87768527 + L1PA15 LINE L1 4168 7601 -2 2950 222 16 12 chrX 74831394 74832160 -87767770 + L1 LINE L1 3991 4759 -1387 * 29234 72 6 4 chrX 74832169 74838300 -87761630 + L1PA6 LINE L1 11 6143 -11 2105 195 27 26 chrX 74838320 74839067 -87760863 + L1P4 LINE L1 4747 5492 -674 2019 174 23 5 chrX 74839097 74839488 -87760442 + MER57A LTR ERV1 1 398 -5 4615 156 28 15 chrX 74839492 74840727 -87759203 + MER57A-int LTR ERV1 1 1289 -6248 3611 148 46 27 chrX 74840714 74841291 -87758639 + MER41-int LTR ERV1 1082 1647 -4299 * 4685 34 7 0 chrX 74841291 74841858 -87758072 + L1PA4 LINE L1 5584 6154 -1 3611 148 46 27 chrX 74841858 74842369 -87757561 + MER41-int LTR ERV1 1647 2295 -3651 2323 159 112 41 chrX 74842369 74842903 -87757027 + MER41-int LTR ERV1 3012 3583 -3954 14936 163 78 56 chrX 74842905 74847728 -87752202 + L1PA11 LINE L1 82 4967 -1895 5653 123 16 7 chrX 74847728 74849330 -87750600 + L1PA11 LINE L1 5279 6890 0 4719 221 21 8 chrX 74849330 74850586 -87749344 + L1 LINE L1 3384 4656 -1490 3298 110 43 4 chrX 74850586 74851078 -87748852 - MER9 LTR ERVK 0 511 1 2155 120 12 10 chrX 74851078 74851431 -87748499 - HERVK9 LTR ERVK 0 8032 5635 18140 94 2 0 chrX 74851457 74853995 -87745935 - HERVK9 LTR ERVK -282 5634 3092 7331 84 2 0 chrX 74854024 74855032 -87744898 - HERVK9 LTR ERVK -3282 2634 1625 4287 111 8 18 chrX 74855032 74855701 -87744229 - HERVK9 LTR ERVK -5254 662 1 2806 135 42 26 chrX 74855701 74855759 -87744171 - MER9 LTR ERVK 0 511 455 198 0 0 0 chrX 74855759 74855781 -87744149 + (CA)n Simple_repeat Simple_repeat 1 22 0 2806 135 42 26 chrX 74855781 74856225 -87743705 - MER9 LTR ERVK -56 455 1 2854 165 22 18 chrX 74856226 74857133 -87742797 + L1P5 LINE L1 4652 5556 -595 309 253 0 42 chrX 74857138 74857233 -87742697 - L1MC4 LINE L1 -1337 6705 6615 2462 106 8 3 chrX 74857233 74857244 -87742686 + L1PB1 LINE L1 5782 5791 -360 195 42 0 0 chrX 74857244 74857268 -87742662 + (CA)n Simple_repeat Simple_repeat 2 25 0 2462 106 8 3 chrX 74857268 74857624 -87742306 + L1PB1 LINE L1 5791 6151 0 20644 123 19 8 chrX 74857624 74860989 -87738941 + MER57A-int LTR ERV1 3743 7146 -391 666 139 25 8 chrX 74860990 74861112 -87738818 + LTR54B LTR ERV1 4 127 -371 815 138 150 99 chrX 74861112 74861365 -87738565 + MER57A-int LTR ERV1 7272 7537 0 2094 149 64 0 chrX 74861365 74861740 -87738190 + MER57A LTR ERV1 1 399 -4 4038 138 17 5 chrX 74861746 74862399 -87737531 + L1PA16 LINE L1 5497 6157 -9 35 24 0 0 chrX 74864528 74864570 -87735360 + AT_rich Low_complexity Low_complexity 1 42 0 2109 141 0 35 chrX 74868552 74868900 -87731030 + MER1B DNA MER1_type 2 337 0 21 36 0 0 chrX 74870127 74870155 -87729775 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 74870197 74870219 -87729711 + AT_rich Low_complexity Low_complexity 1 22 0 2354 109 0 0 chrX 74871182 74871484 -87728446 + AluSg SINE Alu 1 302 -8 225 0 0 0 chrX 74876705 74876730 -87723200 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 369 0 0 0 chrX 74876790 74876831 -87723099 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chrX 74876831 74876859 -87723071 + AT_rich Low_complexity Low_complexity 1 28 0 521 23 58 12 chrX 74878503 74878589 -87721341 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 621 262 72 68 chrX 74879494 74879773 -87720157 + MLT1K LTR MaLR 309 588 0 465 231 67 131 chrX 74879947 74880215 -87719715 + MIR SINE MIR 2 252 -10 23 68 0 0 chrX 74880403 74880447 -87719483 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chrX 74881320 74881342 -87718588 + AT_rich Low_complexity Low_complexity 1 22 0 758 154 0 0 chrX 74881408 74881518 -87718412 + FLAM_C SINE Alu 14 123 -20 333 0 0 0 chrX 74881541 74881578 -87718352 + (CA)n Simple_repeat Simple_repeat 2 38 0 2416 89 0 16 chrX 74881820 74882134 -87717796 - AluSx SINE Alu -2 310 2 194 105 26 0 chrX 74883196 74883234 -87716696 + (TG)n Simple_repeat Simple_repeat 2 40 0 255 61 0 0 chrX 74884660 74884693 -87715237 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 320 90 10 chrX 74885306 74885406 -87714524 - L3 LINE CR1 -282 1295 1188 854 45 15 22 chrX 74886634 74886768 -87713162 + (TTTC)n Simple_repeat Simple_repeat 2 134 0 5905 172 22 10 chrX 74888412 74890395 -87709535 + L1PA15 LINE L1 4150 6157 -8 666 153 160 0 chrX 74890542 74890686 -87709244 + L1MD1 LINE L1 5696 5862 -380 21 36 0 0 chrX 74890962 74890990 -87708940 + AT_rich Low_complexity Low_complexity 1 28 0 658 301 31 10 chrX 74891962 74892155 -87707775 + MIR SINE MIR 12 208 -54 6633 26 0 1 chrX 74892291 74893066 -87706864 - L1PA4 LINE L1 -1 6154 5381 905 18 0 0 chrX 74893066 74893179 -87706751 + L1PA4 LINE L1 5263 5375 -771 1687 175 119 18 chrX 74893351 74893904 -87706026 - L1MD2 LINE L1 -4 6355 5679 7403 26 0 5 chrX 74896766 74897646 -87702284 - L1P LINE L1 -1556 4590 3715 7623 25 1 0 chrX 74897646 74898719 -87701211 + L1PA3 LINE L1 5082 6155 0 190 356 0 0 chrX 74899631 74899690 -87700240 - L2 LINE L2 -1 3312 3254 * 459 296 118 21 chrX 74899676 74899862 -87700068 + MIR SINE MIR 9 212 -50 1189 277 142 20 chrX 74900615 74901305 -87698625 - L1MC4a LINE L1 -1666 6142 5369 951 243 4 12 chrX 74901330 74901573 -87698357 - L1ME LINE L1 -569 5595 5355 1973 251 54 21 chrX 74901717 74902438 -87697492 - L1ME LINE L1 -776 5370 4626 998 239 3 112 chrX 74902465 74902796 -87697134 - MLT1A1 LTR MaLR 0 365 71 10238 213 74 17 chrX 74902811 74906215 -87693715 - L1MA5 LINE L1 -1 6299 3091 180 0 0 0 chrX 74906215 74906235 -87693695 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 12724 148 24 13 chrX 74906235 74906447 -87693483 - L1PA10 LINE L1 -19 6149 5941 423 0 0 0 chrX 74906447 74906494 -87693436 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2217 96 3 0 chrX 74906494 74906776 -87693154 - AluY SINE Alu -28 283 1 12724 148 24 13 chrX 74906776 74907401 -87692529 - L1PA10 LINE L1 -227 5941 5324 183 42 0 0 chrX 74907401 74907425 -87692505 + (TTG)n Simple_repeat Simple_repeat 3 26 0 12724 148 24 13 chrX 74907425 74908077 -87691853 - L1PA10 LINE L1 -844 5324 4680 1859 117 8 0 chrX 74908077 74908334 -87691596 - AluSc SINE Alu -1 308 50 12724 148 24 13 chrX 74908334 74909852 -87690078 - L1PA10 LINE L1 -1488 4680 3118 10238 213 74 17 chrX 74909852 74910499 -87689431 - L1MA5 LINE L1 -3208 3092 2007 19062 39 2 0 chrX 74910510 74913661 -87686269 + L1PA3 LINE L1 3041 6155 0 1757 109 15 18 chrX 74913682 74913956 -87685974 + L1PA10 LINE L1 5895 6167 -1 204 414 58 0 chrX 74914136 74914240 -87685690 + L2 LINE L2 3145 3254 -18 198 0 0 0 chrX 74914419 74914441 -87685489 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2221 98 0 3 chrX 74914446 74914733 -87685197 - AluSg SINE Alu -24 286 1 197 312 26 33 chrX 74915174 74915300 -87684630 + MIR3 SINE MIR 39 161 -51 367 213 109 109 chrX 74915344 74915502 -87684428 - L2 LINE L2 -8 3305 3145 867 45 0 0 chrX 74915502 74915614 -87684316 + (CAATA)n Simple_repeat Simple_repeat 3 114 0 367 213 109 109 chrX 74915614 74915657 -87684273 - L2 LINE L2 -167 3146 3104 767 241 154 43 chrX 74915715 74916014 -87683916 - L1MD2 LINE L1 -11 6348 6017 683 199 73 37 chrX 74916029 74916220 -87683710 - L1MD2 LINE L1 -318 5924 5727 33 0 0 0 chrX 74916425 74916458 -87683472 + AT_rich Low_complexity Low_complexity 1 33 0 4574 142 37 40 chrX 74916464 74917199 -87682731 + L1PA15 LINE L1 4740 5476 -689 2031 138 7 0 chrX 74917199 74917489 -87682441 + AluSq SINE Alu 3 294 -19 4574 142 37 40 chrX 74917489 74917986 -87681944 + L1PA15 LINE L1 5476 5975 -190 2335 98 0 0 chrX 74917986 74918283 -87681647 + AluY SINE Alu 1 297 -14 4574 142 37 40 chrX 74918283 74918472 -87681458 + L1PA15 LINE L1 5975 6163 -2 3675 207 39 16 chrX 74918473 74918758 -87681172 + L1MB1 LINE L1 4868 5145 -1044 3629 90 12 0 chrX 74918758 74919269 -87680661 + L1PA12 LINE L1 5652 6168 0 3675 207 39 16 chrX 74919269 74920232 -87679698 + L1MB1 LINE L1 5145 6187 -2 453 127 0 0 chrX 74920232 74920306 -87679624 + L1MA10 LINE L1 6256 6334 0 193 279 228 0 chrX 74920306 74920385 -87679545 + L2 LINE L2 3212 3308 -5 203 111 0 44 chrX 74920610 74920655 -87679275 + (TATG)n Simple_repeat Simple_repeat 1 43 0 2080 113 7 0 chrX 74920692 74921008 -87678922 - AluSx SINE Alu 0 318 1 2279 169 28 5 chrX 74921297 74921723 -87678207 - L1PA16 LINE L1 -9 6157 5722 3712 161 32 18 chrX 74921734 74922419 -87677511 - L1PA16 LINE L1 -9 6157 5463 1814 275 32 25 chrX 74922428 74923108 -87676822 + L1PB3 LINE L1 -656 28 -6176 4155 231 38 26 chrX 74923245 74925521 -87674409 + L1PB3 LINE L1 2 2249 -3962 2140 140 27 30 chrX 74925521 74925886 -87674044 - THE1B LTR MaLR 0 364 1 11163 117 1 1 chrX 74925886 74927464 -87672466 - THE1B-int LTR MaLR 0 1580 3 1933 153 30 35 chrX 74927465 74927831 -87672099 - THE1B LTR MaLR 0 364 1 4155 231 38 26 chrX 74927831 74930560 -87669370 + L1PB3 LINE L1 2249 4771 -1440 1781 152 168 8 chrX 74930560 74930929 -87669001 + MSTA LTR MaLR 1 428 0 4155 231 38 26 chrX 74930929 74932387 -87667543 + L1PB3 LINE L1 4771 6210 -1 943 155 11 142 chrX 74932395 74932532 -87667398 - L1P4 LINE L1 -690 5476 5323 2210 60 0 0 chrX 74932532 74932799 -87667131 + AluY SINE Alu 1 267 -44 943 155 11 142 chrX 74932799 74933068 -87666862 - L1P4 LINE L1 -843 5323 5127 1790 155 0 21 chrX 74934167 74934457 -87665473 + AluSx SINE Alu 1 336 0 403 39 0 0 chrX 74934457 74934509 -87665421 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 2441 68 3 0 chrX 74935127 74935422 -87664508 - AluSp SINE Alu -17 296 1 323 261 50 56 chrX 74935598 74935759 -87664171 - L1MC4a LINE L1 -1772 6036 5877 530 47 0 116 chrX 74935764 74935850 -87664080 - LTR17 LTR ERV1 -456 324 249 180 274 48 48 chrX 74935850 74935934 -87663996 + MIR SINE MIR 38 121 -141 1239 39 58 0 chrX 74935934 74936089 -87663841 - LTR17 LTR ERV1 -616 164 1 2414 58 0 0 chrX 74936089 74936381 -87663549 - HERV17 LTR ERV1 0 8626 8335 299 51 0 0 chrX 74936371 74936410 -87663520 - HERV17 LTR ERV1 -1078 7548 7510 * 48180 54 10 9 chrX 74936403 74942416 -87657514 - HERV17 LTR ERV1 -2607 6019 1 3760 91 2 51 chrX 74942416 74942968 -87656962 - LTR17 LTR ERV1 0 780 256 525 203 33 82 chrX 74942969 74943151 -87656779 - L1MC4a LINE L1 -1924 5884 5712 5406 190 14 13 chrX 74943272 74945228 -87654702 - L1MA3 LINE L1 -19 7705 5743 2052 76 32 76 chrX 74945228 74945348 -87654582 + AluY SINE Alu 1 125 -186 204 40 0 0 chrX 74945348 74945373 -87654557 + (CA)n Simple_repeat Simple_repeat 2 26 0 2052 76 32 76 chrX 74945373 74945567 -87654363 + AluY SINE Alu 125 301 -10 5406 190 14 13 chrX 74945567 74945765 -87654165 - L1MA3 LINE L1 -1981 5743 5547 * 16726 188 43 16 chrX 74945762 74949750 -87650180 - L1MA3 LINE L1 -3032 4533 423 262 245 0 0 chrX 74949755 74949808 -87650122 + L2 LINE L2 1939 1991 -1323 3075 108 0 59 chrX 74949910 74950282 -87649648 - L1PB1 LINE L1 -4 6147 5814 470 17 17 0 chrX 74950282 74950341 -87649589 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 3075 108 0 59 chrX 74950341 74950497 -87649433 - L1PB1 LINE L1 -337 5814 5650 509 245 29 0 chrX 74950543 74950645 -87649285 - L1MA3 LINE L1 -7282 283 179 731 290 44 4 chrX 74950664 74950931 -87648999 - L1MC4a LINE L1 -633 5609 5314 314 271 146 10 chrX 74952939 74953035 -87646895 - L2 LINE L2 -2 3311 3203 329 288 0 0 chrX 74953575 74953655 -87646275 + L1PA13 LINE L1 249 328 -6459 1207 318 11 39 chrX 74953685 74954122 -87645808 + L1PA13 LINE L1 321 745 -6042 3990 264 25 12 chrX 74954216 74955561 -87644369 + L1PA13 LINE L1 1182 2566 -4231 2793 257 8 37 chrX 74955589 74956579 -87643351 + L1PA13 LINE L1 2924 3884 -2913 4029 156 11 31 chrX 74956579 74957327 -87642603 + L1PA13 LINE L1 5431 6163 0 4711 233 35 15 chrX 74957336 74957995 -87641935 + L1MA9 LINE L1 3881 4525 -1621 1469 215 26 0 chrX 74957995 74958344 -87641586 - MER46B DNA MER2_type -3 233 1 4711 233 35 15 chrX 74958344 74958987 -87640943 + L1MA9 LINE L1 4525 5210 -936 849 229 22 18 chrX 74958992 74959215 -87640715 - L1MA9 LINE L1 -287 6025 5802 523 254 44 70 chrX 74959172 74959444 -87640486 + L1MA9 LINE L1 6010 6274 -38 * 3832 195 18 71 chrX 74959460 74960583 -87639347 + L1MA9 LINE L1 5198 6262 -50 336 173 140 40 chrX 74960597 74960747 -87639183 + L1MC/D LINE L1 3002 3166 -2980 6130 108 5 1 chrX 74960759 74962015 -87637915 + L1PA14 LINE L1 4872 6152 -9 736 181 13 0 chrX 74962073 74962228 -87637702 + L1MC/D LINE L1 5323 5479 -880 3191 153 50 30 chrX 74962228 74962892 -87637038 + L1MA6 LINE L1 5602 6289 -11 738 101 0 0 chrX 74962892 74963001 -87636929 + L1PA13 LINE L1 6047 6155 -8 226 106 0 21 chrX 74963069 74963116 -87636814 - L1MB3 LINE L1 -1 6182 6137 2027 194 12 7 chrX 74963182 74963599 -87636331 - L1MA4 LINE L1 -20 6280 5862 * 2825 165 20 7 chrX 74963585 74964124 -87635806 + L1MA4 LINE L1 5360 5905 -395 1013 193 18 5 chrX 74964120 74964343 -87635587 - L1MB3 LINE L1 -33 6150 5925 * 6285 102 7 0 chrX 74964372 74966032 -87633898 - L1PA8 LINE L1 0 6172 4507 42523 36 22 1 chrX 74966032 74972061 -87627869 - L1PA2 LINE L1 0 6155 1 17210 116 6 14 chrX 74972044 74972265 -87627665 - L1PA8 LINE L1 -1602 4544 4323 * 1814 120 0 0 chrX 74972265 74972506 -87627424 + AluSg SINE Alu 4 244 -66 17210 116 6 14 chrX 74972506 74974995 -87624935 - L1PA8 LINE L1 -1823 4323 1856 2169 101 0 3 chrX 74974995 74975281 -87624649 - AluSc SINE Alu -24 285 1 366 239 104 31 chrX 74975283 74975297 -87624633 - L1 LINE L1 -1486 4660 4648 3553 111 53 85 chrX 74975297 74975993 -87623937 - L1PA11 LINE L1 0 6174 5501 366 239 104 31 chrX 74975993 74976141 -87623789 - L1 LINE L1 -1498 4648 4486 * 1113 228 16 46 chrX 74976120 74976335 -87623595 - L1 LINE L1 -2744 3402 3205 2262 79 0 10 chrX 74976335 74976654 -87623276 - AluY SINE Alu 0 311 1 1113 228 16 46 chrX 74976654 74976872 -87623058 - L1 LINE L1 -2941 3205 2982 4555 164 53 5 chrX 74976876 74977376 -87622554 + L1PB1 LINE L1 5254 5728 -423 383 67 0 17 chrX 74977376 74977436 -87622494 + (TA)n Simple_repeat Simple_repeat 1 59 0 237 33 0 0 chrX 74977435 74977465 -87622465 + (CA)n Simple_repeat Simple_repeat 2 31 0 * 4555 164 53 5 chrX 74977436 74977844 -87622086 + L1PB1 LINE L1 5728 6151 0 2935 213 29 31 chrX 74977845 74978389 -87621541 + L1MB3 LINE L1 3570 4113 -2033 7575 91 19 0 chrX 74978389 74980239 -87619691 - L1PA7 LINE L1 -8 6146 4281 2935 213 29 31 chrX 74980239 74980496 -87619434 + L1MB3 LINE L1 4113 4369 -1777 8783 204 17 7 chrX 74980531 74983242 -87616688 + L1PB1 LINE L1 3055 5803 -348 387 0 0 0 chrX 74983242 74983285 -87616645 + (TA)n Simple_repeat Simple_repeat 2 44 0 8783 204 17 7 chrX 74983285 74983631 -87616299 + L1PB1 LINE L1 5803 6144 -7 4059 181 41 2 chrX 74983645 74984448 -87615482 + L1MA5 LINE L1 5461 6294 -6 26 50 0 0 chrX 74984450 74984490 -87615440 + AT_rich Low_complexity Low_complexity 1 40 0 3038 245 26 18 chrX 74984490 74985723 -87614207 - L1MB5 LINE L1 -8 7585 6341 400 92 12 0 chrX 74985734 74985800 -87614130 - Alu SINE Alu -249 50 1 876 261 63 15 chrX 74985871 74986205 -87613725 - L1MB5 LINE L1 -1886 5679 5330 339 154 0 0 chrX 74986207 74986259 -87613671 - THE1B-int LTR MaLR -1528 52 1 1888 163 42 33 chrX 74986259 74986620 -87613310 - THE1B LTR MaLR 0 364 1 1221 207 6 19 chrX 74986675 74986994 -87612936 + L1MB3 LINE L1 4364 4678 -1468 1562 199 228 0 chrX 74987001 74987423 -87612507 + L1MB3 LINE L1 5625 6142 -41 22 0 0 0 chrX 74987838 74987860 -87612070 + AT_rich Low_complexity Low_complexity 1 22 0 2098 185 36 32 chrX 74987888 74988385 -87611545 - L1MB1 LINE L1 -17 6151 5653 2771 267 66 23 chrX 74988393 74989747 -87610183 + L1M4 LINE L1 3115 4526 -1620 3925 190 81 29 chrX 74989776 74990630 -87609300 - MER4D LTR ERV1 0 903 6 892 248 5 0 chrX 74990717 74990931 -87608999 + L1PB4 LINE L1 5940 6154 -2 1101 232 46 20 chrX 74990954 74991299 -87608631 + L1M4 LINE L1 4643 4996 -1150 2958 182 52 24 chrX 74991305 74992976 -87606954 - L1MB5 LINE L1 -2712 4853 3035 * 9686 185 25 36 chrX 74992974 74993808 -87606122 - L1PA13 LINE L1 0 7601 6760 21433 34 0 0 chrX 74993808 74997176 -87602754 - L1PA3 LINE L1 0 6155 2787 9686 185 25 36 chrX 74997176 74999185 -87600745 - L1PA13 LINE L1 -841 6760 4804 2089 187 21 19 chrX 74999185 74999612 -87600318 + MSTA LTR MaLR 1 428 0 9686 185 25 36 chrX 74999612 74999981 -87599949 - L1PA13 LINE L1 -2797 4804 4433 4794 202 9 1 chrX 74999986 75001466 -87598464 - L1PB2 LINE L1 0 6867 5409 7356 103 5 19 chrX 75001484 75002556 -87597374 - MER11C LTR ERVK -14 1057 1 574 185 0 0 chrX 75002568 75002660 -87597270 + L1P LINE L1 3780 3871 -2275 * 758 91 16 0 chrX 75002655 75002776 -87597154 + L1P4 LINE L1 5358 5480 -681 11822 199 12 13 chrX 75002776 75005376 -87594554 - L1P LINE L1 -796 5350 2753 3516 168 20 26 chrX 75005360 75006139 -87593791 - L1PA13 LINE L1 -4405 3179 2391 * 8665 204 26 5 chrX 75006142 75007687 -87592243 - L1PA13 LINE L1 -6000 1581 3 5609 244 37 20 chrX 75007684 75007820 -87592110 - L1PB2 LINE L1 -2646 4216 4084 * 2379 100 0 0 chrX 75007820 75008131 -87591799 - AluY SINE Alu 0 311 1 5609 244 37 20 chrX 75008131 75012475 -87587455 - L1PB2 LINE L1 -2778 4084 475 4552 59 24 14 chrX 75012476 75013499 -87586431 + MER11A LTR ERVK 1 1266 0 1217 274 60 43 chrX 75013500 75013968 -87585962 - L1PB2 LINE L1 -6385 478 3 1022 269 3 6 chrX 75013997 75014309 -87585621 - L1PA13 LINE L1 -3157 3640 3330 198 222 0 0 chrX 75014309 75014363 -87585567 + (TA)n Simple_repeat Simple_repeat 2 55 0 323 250 34 11 chrX 75014363 75014451 -87585479 - L1MC4 LINE L1 -1339 6703 6614 262 200 22 22 chrX 75014455 75014545 -87585385 - L1MC4 LINE L1 -1339 6703 6614 228 226 71 0 chrX 75014561 75014645 -87585285 + L1MC4 LINE L1 6614 6703 -1339 189 171 0 0 chrX 75014648 75014683 -87585247 + (TATG)n Simple_repeat Simple_repeat 4 38 0 236 213 0 0 chrX 75014683 75014730 -87585200 - L1MC4 LINE L1 -1338 6704 6658 10643 234 63 11 chrX 75014749 75017879 -87582051 - L1PA13 LINE L1 -3482 3315 1 12191 189 26 9 chrX 75017902 75018465 -87581465 - L1M1 LINE L1 -4520 3045 2493 2401 97 0 0 chrX 75018465 75018773 -87581157 - AluSq SINE Alu -5 308 1 12191 189 26 9 chrX 75018773 75020514 -87579416 - L1M1 LINE L1 -5072 2493 703 1579 223 14 25 chrX 75020517 75020884 -87579046 - MLT1A1 LTR MaLR -2 363 1 3267 288 100 22 chrX 75020890 75022196 -87577734 - MLT1A1-int LTR MaLR -7 1728 321 737 278 38 78 chrX 75022198 75022543 -87577387 - MLT-int LTR MaLR -616 1119 789 1819 238 53 64 chrX 75022575 75023411 -87576519 - MLT1A1-int LTR MaLR -701 670 1 1442 244 25 14 chrX 75023411 75023772 -87576158 - MLT1A1 LTR MaLR 0 365 1 2904 214 19 26 chrX 75023772 75024873 -87575057 + L1MA3 LINE L1 4561 5666 -646 16324 178 17 34 chrX 75024877 75027425 -87572505 - L1PA14 LINE L1 -1 7598 5010 300 27 0 0 chrX 75027425 75027462 -87572468 + (TG)n Simple_repeat Simple_repeat 2 38 0 16324 178 17 34 chrX 75027462 75028990 -87570940 - L1PA14 LINE L1 -2589 5010 3458 2156 109 9 40 chrX 75028990 75029312 -87570618 - AluSq SINE Alu -1 312 1 16324 178 17 34 chrX 75029312 75031158 -87568772 - L1PA14 LINE L1 -4141 3458 1775 1508 164 46 0 chrX 75031163 75031467 -87568463 + L1MA3 LINE L1 5984 6301 -4 29 0 0 0 chrX 75031467 75031496 -87568434 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 75031652 75031674 -87568256 + AT_rich Low_complexity Low_complexity 1 22 0 264 224 59 35 chrX 75032005 75032090 -87567840 + MER74B LTR ERVL 42 128 -494 2574 237 99 24 chrX 75032140 75033084 -87566846 + L1MB8 LINE L1 4229 5278 -891 2112 111 0 3 chrX 75033084 75033372 -87566558 - AluSq SINE Alu -16 297 11 2574 237 99 24 chrX 75033372 75033534 -87566396 + L1MB8 LINE L1 5278 5426 -743 1737 248 10 43 chrX 75033542 75034025 -87565905 + MER68 LTR ERV1 82 548 -14 285 338 14 28 chrX 75034092 75034234 -87565696 + MER4B-int LTR ERV1 3105 3244 -3514 * 5229 227 55 29 chrX 75034111 75036878 -87563052 + HERVL68 LTR ERVL 58 3016 -21 1824 218 51 5 chrX 75036907 75037302 -87562628 + MER68 LTR ERV1 1 413 -149 2226 206 62 11 chrX 75037314 75037863 -87562067 + L1MB8 LINE L1 5600 6176 -2 860 250 118 6 chrX 75037944 75038533 -87561397 - LTR50 LTR ERVL -8 787 6 1587 192 39 31 chrX 75039319 75039704 -87560226 + MLT1B LTR MaLR 3 390 0 194 295 33 0 chrX 75039835 75039896 -87560034 + MER5B DNA MER1_type 3 65 -113 8261 210 115 30 chrX 75039897 75041043 -87558887 + L1MCa LINE L1 19 1067 -5359 1905 96 6 114 chrX 75041043 75041375 -87558555 - AluSg SINE Alu -14 296 1 8261 210 115 30 chrX 75041375 75042172 -87557758 + L1MCa LINE L1 1067 1795 -4631 2123 111 0 7 chrX 75042172 75042478 -87557452 + AluSg SINE Alu 1 304 -6 8261 210 115 30 chrX 75042478 75043409 -87556521 + L1MCa LINE L1 1795 3140 -3286 3219 97 2 5 chrX 75043416 75043861 -87556069 - MLT2A1 LTR ERVL 0 444 1 41434 93 16 3 chrX 75043861 75049443 -87550487 - HERVL-A1 LTR ERVL 0 5654 1 340 156 0 78 chrX 75049443 75049483 -87550447 - MLT2A2 LTR ERVL 0 444 411 729 0 0 0 chrX 75049483 75049564 -87550366 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 340 156 0 78 chrX 75049564 75049600 -87550330 - MLT2A2 LTR ERVL -33 411 374 261 0 0 0 chrX 75049676 75049705 -87550225 + (TA)n Simple_repeat Simple_repeat 2 30 0 2642 111 0 28 chrX 75049737 75050126 -87549804 - MLT2A2 LTR ERVL -75 378 1 1334 251 49 3 chrX 75050129 75050476 -87549454 - MLT1A1 LTR MaLR -2 363 1 2179 159 29 12 chrX 75050495 75050903 -87549027 - L1MA4A LINE L1 -13 6290 5876 1681 189 17 57 chrX 75050905 75051312 -87548618 - L1MA4A LINE L1 -513 5790 5400 9714 206 24 22 chrX 75051315 75051447 -87548483 + L1M1 LINE L1 406 536 -7029 2484 67 3 0 chrX 75051447 75051746 -87548184 - AluY SINE Alu -11 300 1 9714 206 24 22 chrX 75051746 75053539 -87546391 + L1M1 LINE L1 536 2335 -5230 12222 112 13 2 chrX 75053556 75056188 -87543742 - L1PA7 LINE L1 -1 6153 3499 7078 46 3 0 chrX 75056189 75057062 -87542868 - L1PA5 LINE L1 -4 6150 5275 8635 47 17 0 chrX 75057063 75058908 -87541022 + L1PA4 LINE L1 4294 6153 -2 7507 203 27 56 chrX 75058908 75060175 -87539755 + L1M1 LINE L1 2669 3971 -3594 333 0 0 0 chrX 75060175 75060212 -87539718 + (TA)n Simple_repeat Simple_repeat 2 38 0 7507 203 27 56 chrX 75060212 75062008 -87537922 + L1M1 LINE L1 3971 5643 -1922 306 113 97 0 chrX 75112010 75112072 -87487858 + L1MA3 LINE L1 6238 6305 0 197 354 108 15 chrX 75112360 75112490 -87487440 + L2 LINE L2 3161 3302 -11 21 0 0 0 chrX 75113582 75113603 -87486327 + AT_rich Low_complexity Low_complexity 1 21 0 357 173 0 0 chrX 75114262 75114314 -87485616 + MER5A DNA MER1_type 7 58 -131 4373 116 28 32 chrX 75114316 75115101 -87484829 - Tigger1 DNA MER2_type -1098 1320 539 824 162 68 29 chrX 75115104 75115412 -87484518 + Ricksha DNA DNA 1 410 -1636 * 3424 164 38 26 chrX 75115410 75115739 -87484191 + Ricksha DNA DNA 2500 2823 -437 2453 83 0 0 chrX 75115739 75116039 -87483891 + AluSx SINE Alu 1 300 -12 3424 164 38 26 chrX 75116039 75116490 -87483440 + Ricksha DNA DNA 2823 3247 -13 754 200 13 0 chrX 75116495 75116650 -87483280 - Tigger1 DNA MER2_type -1873 545 389 304 271 0 0 chrX 75116702 75116772 -87483158 - MIR SINE MIR -115 147 78 4315 100 34 39 chrX 75116973 75117742 -87482188 - L1PA13 LINE L1 -4 6159 5395 288 109 146 0 chrX 75117745 75117800 -87482130 - L1PA13 LINE L1 -968 5178 5116 1188 160 49 4 chrX 75117894 75118119 -87481811 - MER46A DNA MER2_type -1 235 1 7174 52 11 0 chrX 75120383 75121652 -87478278 - L1PA6 LINE L1 -13 6141 4867 1896 94 3 0 chrX 75121652 75121938 -87477992 - L1PA6 LINE L1 -1231 4915 4629 2247 72 3 0 chrX 75121939 75122246 -87477684 - L1PA6 LINE L1 -1931 4215 3908 848 119 0 0 chrX 75122368 75122494 -87477436 - L1P4 LINE L1 -508 5658 5533 19389 83 22 0 chrX 75122494 75125174 -87474756 + HERVK22 LTR ERVK 4083 6824 -13 414 0 0 0 chrX 75125174 75125220 -87474710 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 19389 83 22 0 chrX 75125220 75125233 -87474697 + HERVK22 LTR ERVK 6824 6835 -2 2061 181 83 35 chrX 75125235 75125717 -87474213 + LTR22 LTR ERVK 1 505 -4 13159 145 20 107 chrX 75125721 75129034 -87470896 - L1P LINE L1 -3108 3038 12 440 211 17 90 chrX 75129045 75129229 -87470701 - L1 LINE L1 -2927 3219 3048 1246 204 101 8 chrX 75129330 75129719 -87470211 - MLT2B1 LTR ERVL -41 479 1 181 250 0 0 chrX 75129749 75129785 -87470145 - MER5A DNA MER1_type -1 188 153 362 191 56 0 chrX 75129799 75129888 -87470042 + MLT2B2 LTR ERVL 415 508 -7 313 135 0 0 chrX 75129891 75129943 -87469987 + HERVL-B2 LTR ERVL 1 52 -5602 1776 157 10 7 chrX 75129943 75130249 -87469681 - L1PA15 LINE L1 0 6165 5859 23071 109 10 55 chrX 75130259 75136563 -87463367 + L1PA7 LINE L1 12 5934 -220 27140 90 8 18 chrX 75136688 75140630 -87459300 - L1P LINE L1 -2231 3915 11 21 0 0 0 chrX 75140696 75140717 -87459213 + AT_rich Low_complexity Low_complexity 1 21 0 363 364 29 0 chrX 75140773 75140913 -87459017 + LTR16A1 LTR ERVL 1 144 -313 2328 82 0 0 chrX 75141079 75141371 -87458559 + AluY SINE Alu 1 292 -19 15910 37 19 0 chrX 75141373 75144073 -87455857 + L1PA5 LINE L1 3444 6154 0 12145 181 19 4 chrX 75144709 75146827 -87453103 - L1M1 LINE L1 -5398 2167 18 4685 283 92 5 chrX 75146830 75148366 -87451564 - L2 LINE L2 -961 2353 684 332 250 103 37 chrX 75148989 75149125 -87450805 - L1M2a LINE L1 -6458 710 566 509 266 97 19 chrX 75151098 75151305 -87448625 - L1ME3A LINE L1 -219 5951 5729 1975 107 14 4 chrX 75151400 75151681 -87448249 - AluSx SINE Alu -12 300 17 349 298 0 12 chrX 75152427 75152511 -87447419 - MER5A DNA MER1_type -44 145 63 228 182 0 18 chrX 75152695 75152750 -87447180 + A-rich Low_complexity Low_complexity 2 55 0 216 0 0 0 chrX 75153505 75153529 -87446401 + (GA)n Simple_repeat Simple_repeat 2 25 0 881 236 54 0 chrX 75154273 75154476 -87445454 - MER20 DNA MER1_type -4 215 2 227 257 40 0 chrX 75154766 75154840 -87445090 - L1ME3A LINE L1 -2123 5685 5609 2799 13 0 0 chrX 75155335 75155643 -87444287 - AluY SINE Alu -3 308 1 2436 87 0 6 chrX 75157019 75157331 -87442599 - AluSp SINE Alu -3 310 1 4915 137 5 19 chrX 75157414 75158238 -87441692 - L1PA15 LINE L1 -2 6163 5352 1069 228 74 23 chrX 75159691 75160302 -87439628 - L1ME1 LINE L1 -186 5980 5317 * 29048 120 15 60 chrX 75160292 75166761 -87433169 - L1PA8 LINE L1 0 6823 663 579 196 51 0 chrX 75166768 75166906 -87433024 - L1ME1 LINE L1 -814 5332 5188 5044 134 5 17 chrX 75166907 75167737 -87432193 - L1PA15 LINE L1 -7 6158 5339 3428 241 30 33 chrX 75167730 75168796 -87431134 - L1PA13 LINE L1 -4390 2407 1329 * 2446 297 4 26 chrX 75168819 75169520 -87430410 - L1PA8 LINE L1 -6101 686 1 30 27 0 0 chrX 75170326 75170363 -87429567 + AT_rich Low_complexity Low_complexity 1 37 0 7540 30 11 0 chrX 75170392 75171319 -87428611 - L1PA4 LINE L1 0 6155 5227 5881 40 0 1 chrX 75171319 75172039 -87427891 + L1PA4 LINE L1 4515 5233 -913 6148 57 23 0 chrX 75172636 75173415 -87426515 + L1PA7 LINE L1 5343 6139 -15 455 347 75 0 chrX 75174518 75174691 -87425239 - MIR3 SINE MIR -7 201 16 791 209 0 0 chrX 75174948 75175082 -87424848 - MER82 DNA MER2_type -519 134 1 2040 139 31 17 chrX 75175468 75175792 -87424138 - L1PA16 LINE L1 -9 6157 5826 2338 99 0 0 chrX 75175792 75176095 -87423835 - AluY SINE Alu -8 303 1 2040 139 31 17 chrX 75176095 75176129 -87423801 - L1PA16 LINE L1 -340 5826 5794 518 365 35 121 chrX 75177244 75177874 -87422056 + L2 LINE L2 1990 2565 -749 22 70 0 0 chrX 75178105 75178148 -87421782 + AT_rich Low_complexity Low_complexity 1 43 0 2230 105 0 0 chrX 75178962 75179256 -87420674 + AluSx SINE Alu 1 294 -18 288 0 0 0 chrX 75179612 75179644 -87420286 + (TG)n Simple_repeat Simple_repeat 2 33 0 376 325 46 15 chrX 75180062 75180259 -87419671 - MIR SINE MIR -58 204 2 487 316 26 44 chrX 75180264 75180492 -87419438 - MIR SINE MIR -10 252 29 4802 115 21 9 chrX 75180660 75181431 -87418499 + L1MA3 LINE L1 5407 6186 -119 572 319 40 28 chrX 75182230 75182481 -87417449 + MIR SINE MIR 2 255 -7 2935 6 0 0 chrX 75182777 75183095 -87416835 - AluYb8 SINE Alu 0 318 1 401 288 40 22 chrX 75183397 75183636 -87416294 - L1MDa LINE L1 -4843 1801 1452 5042 168 10 22 chrX 75183723 75184666 -87415264 - L1MA7 LINE L1 -26 6265 5332 2325 85 23 10 chrX 75184666 75184973 -87414957 - AluSp SINE Alu -2 311 1 5042 168 10 22 chrX 75184973 75184990 -87414940 - L1MA7 LINE L1 -959 5332 5316 4787 147 13 4 chrX 75185011 75185837 -87414093 - L1MA6 LINE L1 -6 6294 5461 4182 121 21 6 chrX 75185850 75186552 -87413378 - L1MA5A LINE L1 -10 6287 5575 6960 69 15 55 chrX 75186552 75189102 -87410828 - SVA Other Other -518 1386 1 2636 176 36 14 chrX 75189106 75189960 -87409970 - L1MA5A LINE L1 -714 5583 4727 433 179 19 9 chrX 75189958 75190064 -87409866 + L1MA5A LINE L1 4629 4735 -1411 * 2445 197 29 3 chrX 75190059 75190642 -87409288 - L1MA6 LINE L1 -815 5331 4734 949 143 31 5 chrX 75190644 75190840 -87409090 - Ricksha DNA DNA -10 3236 3036 5707 170 23 19 chrX 75190840 75191919 -87408011 - Ricksha DNA DNA -2145 1101 18 8916 211 22 7 chrX 75191920 75194141 -87405789 - L1MA6 LINE L1 -1386 4760 2507 497 184 20 0 chrX 75194620 75194718 -87405212 - MER20 DNA MER1_type -2 217 118 * 713 190 6 25 chrX 75194716 75194874 -87405056 - MER20 DNA MER1_type -36 183 29 2152 111 34 3 chrX 75194915 75195239 -87404691 - MER4A LTR ERV1 0 664 331 4283 122 52 35 chrX 75195265 75196099 -87403831 - MER4A-int LTR ERV1 -1914 4684 3837 1077 154 39 23 chrX 75196098 75196358 -87403572 - MER4A-int LTR ERV1 -2917 3681 3418 * 40727 32 24 1 chrX 75196360 75202376 -87397554 + L1PA3 LINE L1 2 6155 0 1698 142 104 77 chrX 75202378 75202936 -87396994 - MER4A-int LTR ERV1 -4394 2364 1792 6586 102 13 2 chrX 75202939 75203889 -87396041 - THE1-int LTR MaLR -453 1127 168 1075 172 115 58 chrX 75203889 75204506 -87395424 - MER4A-int LTR ERV1 -4300 2298 982 311 83 21 0 chrX 75204507 75204555 -87395375 + THE1A-int LTR MaLR 1532 1580 0 2633 83 14 0 chrX 75204555 75204905 -87395025 + THE1A LTR MaLR 1 355 0 1888 119 53 5 chrX 75204933 75205509 -87394421 - MER4A-int LTR ERV1 -5912 686 1 2558 101 15 25 chrX 75205512 75205920 -87394010 - MER4A LTR ERV1 0 664 261 634 111 0 10 chrX 75205920 75206019 -87393911 - MER4A LTR ERV1 -566 98 1 9995 239 18 15 chrX 75206019 75207792 -87392138 - L1PA12 LINE L1 -1600 5984 4189 189 0 0 0 chrX 75207792 75207813 -87392117 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 9995 239 18 15 chrX 75207813 75209204 -87390726 - L1PA12 LINE L1 -3395 4189 2805 1448 190 4 11 chrX 75209277 75209540 -87390390 - AluJo SINE Alu -21 291 31 232 155 211 14 chrX 75210197 75210268 -87389662 + MIR SINE MIR 178 262 0 1810 180 0 14 chrX 75210838 75211133 -87388797 - AluJo SINE Alu -21 291 1 2241 102 3 13 chrX 75212300 75212605 -87387325 - AluSc SINE Alu -7 302 1 2270 97 3 0 chrX 75213311 75213600 -87386330 + AluSg SINE Alu 1 290 -20 2389 181 64 85 chrX 75214373 75215160 -87384770 - LTR25 LTR ERV1 -3 788 1 11546 162 45 49 chrX 75215160 75216865 -87383065 - HUERS-P3b LTR ERV1 -11 6985 5274 2292 102 0 0 chrX 75216865 75217171 -87382759 + AluSg SINE Alu 1 306 0 11546 162 45 49 chrX 75217171 75217919 -87382011 - HUERS-P3b LTR ERV1 -1722 5274 4524 2755 82 3 0 chrX 75217919 75218273 -87381657 + THE1A LTR MaLR 1 355 0 11546 162 45 49 chrX 75218273 75220021 -87379909 - HUERS-P3b LTR ERV1 -2472 4524 2874 4151 191 14 35 chrX 75220017 75220409 -87379521 - HUERS-P3 LTR ERV1 -5703 3216 2817 * 2270 119 0 0 chrX 75220409 75220721 -87379209 - AluSx SINE Alu 0 312 1 4151 191 14 35 chrX 75220721 75221991 -87377939 - HUERS-P3 LTR ERV1 -6102 2817 1600 6809 185 18 25 chrX 75221993 75222624 -87377306 - HUERS-P3 LTR ERV1 -5560 1436 802 1606 137 172 13 chrX 75222624 75222938 -87376992 - THE1B LTR MaLR 0 364 1 6809 185 18 25 chrX 75222938 75223752 -87376178 - HUERS-P3 LTR ERV1 -6194 802 1 2881 133 23 59 chrX 75223769 75224341 -87375589 - LTR25 LTR ERV1 0 794 244 485 111 0 25 chrX 75224361 75224442 -87375488 - LTR25 LTR ERV1 -501 293 215 230 128 0 0 chrX 75224422 75224461 -87375469 - MER61E LTR ERV1 -458 111 73 * 2321 104 0 10 chrX 75224971 75225280 -87374650 + AluSx SINE Alu 1 306 -6 22 80 0 0 chrX 75225561 75225611 -87374319 + AT_rich Low_complexity Low_complexity 1 50 0 2447 90 0 3 chrX 75225892 75226202 -87373728 - AluY SINE Alu -2 309 1 3300 25 5 0 chrX 75227512 75227904 -87372026 - L1PA7 LINE L1 -1 6153 5760 236 213 0 0 chrX 75230213 75230260 -87369670 + (TA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chrX 75231238 75231259 -87368671 + AT_rich Low_complexity Low_complexity 1 21 0 227 259 0 0 chrX 75232559 75232613 -87367317 + L2 LINE L2 1187 1240 -2074 21 0 0 0 chrX 75238348 75238369 -87361561 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chrX 75239835 75239882 -87360048 + AT_rich Low_complexity Low_complexity 1 47 0 544 259 56 75 chrX 75240414 75240827 -87359103 - L1MC5 LINE L1 -168 7793 7389 21 36 0 0 chrX 75241507 75241535 -87358395 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 75241869 75241897 -87358033 + AT_rich Low_complexity Low_complexity 1 28 0 1452 48 24 39 chrX 75242951 75243158 -87356772 - L1PA8 LINE L1 0 6172 5969 2439 60 0 19 chrX 75243839 75244153 -87355777 + AluY SINE Alu 1 308 -3 486 227 131 17 chrX 75245206 75245382 -87354548 + L1M4 LINE L1 2 197 -6345 4535 151 44 15 chrX 75245382 75246250 -87353680 - L1MC1 LINE L1 -18 6315 5423 22 0 0 0 chrX 75246841 75246863 -87353067 + AT_rich Low_complexity Low_complexity 1 22 0 855 200 39 22 chrX 75248603 75248783 -87351147 - MLT2B2 LTR ERVL -328 187 5 377 237 81 29 chrX 75248824 75248997 -87350933 - L1MC4 LINE L1 -155 7887 7706 730 261 63 47 chrX 75249128 75249381 -87350549 - MIR SINE MIR 0 262 6 371 294 110 0 chrX 75249498 75249634 -87350296 + MIR SINE MIR 112 262 0 546 131 10 20 chrX 75250509 75250608 -87349322 + L1PA15 LINE L1 6068 6165 0 299 173 0 0 chrX 75250608 75250660 -87349270 - HERVL-B3 LTR ERVL -5602 52 1 414 180 56 0 chrX 75250663 75250752 -87349178 - MLT2B3 LTR ERVL -7 508 415 186 250 0 0 chrX 75250766 75250802 -87349128 + MER5A DNA MER1_type 153 188 -1 1448 185 75 106 chrX 75250832 75251133 -87348797 + MLT2B1 LTR ERVL 1 310 -210 477 0 0 0 chrX 75251133 75251186 -87348744 + (TC)n Simple_repeat Simple_repeat 2 54 0 359 55 0 18 chrX 75251185 75251240 -87348690 + (TA)n Simple_repeat Simple_repeat 1 54 0 * 1448 185 75 106 chrX 75251186 75251429 -87348501 + MLT2B1 LTR ERVL 310 476 -44 191 125 25 0 chrX 75251506 75251546 -87348384 + (TA)n Simple_repeat Simple_repeat 1 41 0 1464 246 30 21 chrX 75251646 75251975 -87347955 - MLT2B3 LTR ERVL -89 465 134 347 319 69 43 chrX 75251976 75252164 -87347766 - L1M2a LINE L1 -5350 1818 1626 27069 142 13 7 chrX 75252850 75259102 -87340828 + HUERS-P3 LTR ERV1 2526 8918 -1 3694 138 43 6 chrX 75259102 75259723 -87340207 + LTR9B LTR ERV1 1 644 0 469 292 79 0 chrX 75260366 75260568 -87339362 - L1MDa LINE L1 -3657 2883 2666 270 287 37 54 chrX 75260690 75260825 -87339105 - L1M4 LINE L1 -5718 928 611 523 230 130 4 chrX 75261403 75261633 -87338297 - L1MDa LINE L1 -3959 2581 2323 1166 283 34 20 chrX 75261634 75261991 -87337939 + LTR38-int LTR ERV1 17 378 -1408 4719 192 58 16 chrX 75262138 75263186 -87336744 + LTR57-int LTR ERVL 298 1389 -3954 837 166 184 39 chrX 75263213 75263496 -87336434 + LTR38-int LTR ERV1 1720 2043 -6077 2398 171 101 30 chrX 75263507 75263982 -87335948 + MER49 LTR ERV1 241 749 -174 386 367 28 24 chrX 75264023 75264271 -87335659 + LTR38-int LTR ERV1 6621 6869 -253 1003 298 50 20 chrX 75264569 75264965 -87334965 + LTR38 LTR ERV1 149 556 0 5292 170 61 20 chrX 75265047 75268240 -87331690 - L1PA7 LINE L1 -3 6411 446 29 47 0 0 chrX 75268280 75268323 -87331607 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chrX 75268718 75268740 -87331190 + AT_rich Low_complexity Low_complexity 1 22 0 1291 255 101 31 chrX 75269321 75269906 -87330024 + L1MC4 LINE L1 6725 7350 -692 330 26 0 0 chrX 75269907 75269946 -87329984 + (CA)n Simple_repeat Simple_repeat 2 40 0 1842 138 7 3 chrX 75269988 75270284 -87329646 - AluSx SINE Alu -15 297 1 567 115 0 0 chrX 75270480 75270567 -87329363 + L1PB4 LINE L1 6068 6154 -2 712 300 30 21 chrX 75270576 75270809 -87329121 + MIR SINE MIR 28 262 0 256 282 98 37 chrX 75270956 75271119 -87328811 + L1MCa LINE L1 1440 1612 -4814 1961 130 30 0 chrX 75271119 75271418 -87328512 + AluSx SINE Alu 1 308 -4 673 274 29 59 chrX 75271445 75271934 -87327996 + L1MCa LINE L1 2006 2584 -4023 5875 141 99 7 chrX 75272013 75274842 -87325088 - L1PA12 LINE L1 -2 6166 3057 473 310 43 22 chrX 75274842 75275074 -87324856 + L1MCa LINE L1 3352 3588 -2838 4902 163 10 6 chrX 75275087 75276400 -87323530 + L1PB2 LINE L1 4720 6035 -116 2315 78 7 3 chrX 75276404 75276699 -87323231 + AluY SINE Alu 1 296 -15 1131 28 0 7 chrX 75276699 75276841 -87323089 - L1P LINE L1 -1573 4573 4433 6098 19 0 0 chrX 75276841 75277536 -87322394 + L1PA3 LINE L1 5455 6151 -4 665 169 8 0 chrX 75277565 75277695 -87322235 + L1PB2 LINE L1 6018 6148 -3 1583 237 11 15 chrX 75277703 75278158 -87321772 + L1 LINE L1 2172 2624 -3522 7343 263 55 15 chrX 75278289 75282105 -87317825 + L1PB3 LINE L1 2172 6147 -7 465 19 0 0 chrX 75282105 75282159 -87317771 + (TA)n Simple_repeat Simple_repeat 1 54 0 417 223 26 8 chrX 75282184 75282314 -87317616 + L1PB4 LINE L1 2383 2515 -3631 4518 234 20 15 chrX 75282358 75283621 -87316309 + L1PB4 LINE L1 4134 5402 -744 2069 168 42 35 chrX 75283633 75284178 -87315752 - MLT2A2 LTR ERVL 0 554 1 1562 225 21 0 chrX 75284236 75284614 -87315316 + L1PB4 LINE L1 5770 6155 -1 3345 268 80 31 chrX 75284626 75285851 -87314079 + L1MD2 LINE L1 3273 4626 -1520 2020 134 0 20 chrX 75285851 75286149 -87313781 + AluSx SINE Alu 1 292 -20 3345 268 80 31 chrX 75286149 75286839 -87313091 + L1MD2 LINE L1 4626 5281 -865 288 284 0 0 chrX 75286862 75286936 -87312994 + L1MD2 LINE L1 5922 5995 -364 1498 258 57 28 chrX 75287007 75287654 -87312276 + L1M4 LINE L1 4145 4810 -1336 248 111 22 0 chrX 75287654 75287699 -87312231 + (CA)n Simple_repeat Simple_repeat 1 46 0 4823 104 27 71 chrX 75287731 75288546 -87311384 - LTR19C LTR ERV1 0 779 1 6052 164 32 23 chrX 75288549 75289968 -87309962 - LTR19C-int LTR ERV1 -1 6995 2876 846 177 74 5 chrX 75289960 75290163 -87309767 - LTR19-int LTR ERV1 -3302 4235 4019 * 3734 135 10 19 chrX 75290156 75290920 -87309010 - LTR19-int LTR ERV1 -2499 4497 3728 1668 89 0 5 chrX 75290920 75291134 -87308796 - AluSc SINE Alu -15 294 82 3734 135 10 19 chrX 75291134 75291150 -87308780 - LTR19-int LTR ERV1 -3268 3728 1414 1061 122 41 0 chrX 75291197 75291369 -87308561 - LTR19C LTR ERV1 -600 179 1 1421 179 8 0 chrX 75291398 75291650 -87308280 - L1PB4 LINE L1 -7 6149 5896 974 207 1 20 chrX 75291696 75292021 -87307909 - AluJo SINE Alu -19 293 8 594 285 35 0 chrX 75292053 75292253 -87307677 + L1M4 LINE L1 4823 5029 -1117 5088 216 36 8 chrX 75292260 75293554 -87306376 + L1P LINE L1 3180 4510 -1636 238 288 0 0 chrX 75293586 75293645 -87306285 + MLT1K LTR MaLR 69 127 -461 327 208 9 0 chrX 75293658 75293720 -87306210 - MER72 LTR ERV1 -290 432 264 16553 124 27 123 chrX 75293749 75297473 -87302457 - L1P LINE L1 -2778 3368 1 1842 156 45 0 chrX 75297578 75297911 -87302019 - L1PA16 LINE L1 -6 6160 5813 376 275 92 19 chrX 75297916 75298123 -87301807 + L1M4b LINE L1 710 931 -5928 551 145 0 0 chrX 75298570 75298653 -87301277 + AluJ/FLAM SINE Alu 9 91 -221 18011 88 3 14 chrX 75298653 75301075 -87298855 + HERVL-A2 LTR ERVL 2978 5374 -280 6009 93 29 3 chrX 75301133 75302209 -87297721 - L1PA8A LINE L1 -3 6128 5047 6923 128 5 0 chrX 75302209 75303276 -87296654 + L1PA8A LINE L1 3976 5047 -1099 1855 118 10 0 chrX 75303276 75303573 -87296357 + HERVL-A2 LTR ERVL 5355 5654 0 3219 117 2 4 chrX 75303573 75304027 -87295903 + MLT2A2 LTR ERVL 1 453 0 463 264 123 0 chrX 75304138 75304268 -87295662 - L1ME3 LINE L1 -163 5999 5854 851 269 19 4 chrX 75304297 75304561 -87295369 - L1ME3 LINE L1 -377 5793 5526 1196 124 5 5 chrX 75304682 75304892 -87295038 + HERVL-A2 LTR ERVL 5445 5654 0 2564 152 20 7 chrX 75304892 75305339 -87294591 + MLT2A2 LTR ERVL 1 453 0 1531 248 120 24 chrX 75305455 75306071 -87293859 - L1ME3A LINE L1 -176 5994 5320 1541 151 51 7 chrX 75306493 75306785 -87293145 + L1MB1 LINE L1 5864 6168 0 181 296 37 0 chrX 75306817 75306871 -87293059 + MER5C DNA MER1_type 1 56 -268 1123 187 0 0 chrX 75307130 75307328 -87292602 + AluSg/x SINE Alu 95 292 -18 25 0 0 0 chrX 75308105 75308130 -87291800 + AT_rich Low_complexity Low_complexity 1 25 0 244 197 13 13 chrX 75308475 75308551 -87291379 + (TA)n Simple_repeat Simple_repeat 2 77 0 3205 305 42 10 chrX 75308562 75310010 -87289920 - L1ME3A LINE L1 -1149 4997 3504 2314 229 28 9 chrX 75310045 75310591 -87289339 + Tigger6b DNA MER2_type 1 556 -1041 2658 179 17 2 chrX 75310595 75311116 -87288814 + L1PA13 LINE L1 3261 3789 -2357 * 11075 25 1 0 chrX 75311100 75312409 -87287521 - L1P LINE L1 -916 5230 3921 7245 179 18 21 chrX 75312509 75314752 -87285178 + L1PA13 LINE L1 3902 6144 -19 2014 177 17 0 chrX 75314759 75315121 -87284809 + Tigger6b DNA MER2_type 546 913 -684 985 218 36 0 chrX 75315109 75315334 -87284596 + Tigger6b DNA MER2_type 1080 1312 -285 * 4769 189 31 13 chrX 75315355 75315503 -87284427 - L1MA8 LINE L1 -16 6275 6131 1770 143 0 85 chrX 75315503 75315832 -87284098 + AluSx SINE Alu 1 301 -11 4769 189 31 13 chrX 75315832 75317143 -87282787 - L1MA8 LINE L1 -160 6131 4773 213 65 0 0 chrX 75317143 75317174 -87282756 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 4769 189 31 13 chrX 75317174 75317582 -87282348 - L1MA8 LINE L1 -1518 4773 4374 392 305 12 18 chrX 75317832 75317999 -87281931 + L1PA12 LINE L1 2182 2347 -5234 * 13886 226 18 29 chrX 75317998 75323635 -87276295 + L1PA15 LINE L1 1235 6803 -13 5416 195 55 53 chrX 75323650 75324299 -87275631 - L1MA8 LINE L1 -1768 4378 3732 2287 107 0 0 chrX 75324299 75324608 -87275322 - AluSg SINE Alu -1 309 1 5416 195 55 53 chrX 75324608 75325599 -87274331 - L1MA8 LINE L1 -2414 3732 2734 294 29 0 0 chrX 75326081 75326116 -87273814 + (TA)n Simple_repeat Simple_repeat 1 35 0 3744 174 71 16 chrX 75326311 75327041 -87272889 - LTR1 LTR ERV1 0 785 16 548 232 65 19 chrX 75327581 75327736 -87272194 - MER103 DNA DNA 0 166 5 397 282 48 0 chrX 75327780 75327904 -87272026 + MIR SINE MIR 132 261 -1 637 360 43 24 chrX 75328202 75328574 -87271356 - LTR16B LTR ERVL 0 464 86 305 354 51 14 chrX 75328650 75328865 -87271065 - L2 LINE L2 -929 2385 2163 385 267 0 10 chrX 75328878 75328979 -87270951 + MLT1F1 LTR MaLR 1 100 -467 2288 244 37 0 chrX 75329039 75329632 -87270298 - L1MB7 LINE L1 -18 6166 5552 406 226 66 58 chrX 75329635 75329772 -87270158 - LTR52-int LTR ERVL -3349 207 70 * 446 304 22 0 chrX 75329740 75329878 -87270052 - LTR52-int LTR ERVL -3403 153 13 1240 235 59 32 chrX 75329890 75330298 -87269632 - LTR52 LTR ERVL -2 419 1 1030 331 30 18 chrX 75330362 75330800 -87269130 + L1MB8 LINE L1 2 444 -5697 284 309 0 0 chrX 75330902 75330986 -87268944 + L1M3c LINE L1 729 812 -5329 241 276 147 63 chrX 75331021 75331307 -87268623 + L1MB8 LINE L1 588 897 -5244 3441 180 46 49 chrX 75331409 75332180 -87267750 + LTR19C LTR ERV1 5 742 -37 288 53 0 0 chrX 75332597 75332635 -87267295 + (CA)n Simple_repeat Simple_repeat 2 39 0 3525 263 55 40 chrX 75332688 75335535 -87264395 + L1MB8 LINE L1 785 3631 -2579 23 97 0 0 chrX 75338047 75338119 -87261811 + AT_rich Low_complexity Low_complexity 1 72 0 577 248 0 7 chrX 75338274 75338423 -87261507 + L1MB8 LINE L1 3626 3773 -2437 * 2683 39 3 0 chrX 75338421 75338756 -87261174 + L1P LINE L1 4936 5271 -875 10524 47 6 6 chrX 75338856 75340944 -87258986 + L1PA4 LINE L1 4069 6155 0 4896 224 34 7 chrX 75340950 75342171 -87257759 + L1MB8 LINE L1 3769 5023 -1187 2010 177 0 32 chrX 75342173 75342574 -87257356 - L1PA15 LINE L1 -2 6163 5776 3587 57 2 0 chrX 75342674 75343132 -87256798 + L1PA4 LINE L1 5694 6152 -3 14790 43 0 6 chrX 75343149 75345176 -87254754 - L1P2 LINE L1 -594 5560 3548 3928 84 13 0 chrX 75345176 75345710 -87254220 - L1P2 LINE L1 -4882 1264 724 5865 263 35 32 chrX 75345821 75348366 -87251564 - L1PA12 LINE L1 -4044 3540 979 2678 236 33 13 chrX 75348364 75349054 -87250876 + L1MB8 LINE L1 5459 6162 -80 * 1608 139 14 24 chrX 75350102 75350390 -87249540 - L1MA3 LINE L1 0 6305 6021 4823 214 24 11 chrX 75350391 75351684 -87248246 - L1 LINE L1 -2745 4820 3512 28894 130 11 62 chrX 75351686 75358110 -87241820 - L1PA8 LINE L1 -76 6096 12 3446 128 90 28 chrX 75358118 75358805 -87241125 + MER4-int LTR ERV1 5864 6593 -5 1425 202 24 3 chrX 75358934 75359221 -87240709 + MER4A LTR ERV1 372 664 0 5308 165 32 1 chrX 75359223 75360480 -87239450 + L1PB2 LINE L1 4858 6149 -2 520 276 14 36 chrX 75360512 75360733 -87239197 + L1P LINE L1 2824 3039 -3107 7494 93 16 6 chrX 75360964 75362002 -87237928 - L1P LINE L1 -5095 1051 3 3020 143 8 4 chrX 75362024 75362526 -87237404 + L1PA13 LINE L1 5649 6152 -11 1336 208 38 3 chrX 75362580 75362926 -87237004 + Charlie2 DNA MER1_type 2470 2827 -35 1939 86 0 0 chrX 75362935 75363261 -87236669 + L1PA8 LINE L1 5893 6218 0 311 117 0 33 chrX 75363908 75363968 -87235962 - MER92C LTR ERV1 0 554 497 3545 137 49 11 chrX 75364101 75364734 -87235196 - MER51D LTR ERV1 0 657 1 307 152 0 0 chrX 75364811 75364857 -87235073 - MER92B LTR ERV1 -590 46 1 429 180 10 40 chrX 75365196 75365296 -87234634 - LTR37A LTR ERV1 -326 100 4 560 217 39 0 chrX 75365353 75365482 -87234448 - MER31-int LTR ERV1 -737 4199 4066 2074 154 72 0 chrX 75365482 75365884 -87234046 - L1MB4 LINE L1 0 6180 5750 487 151 42 76 chrX 75365947 75366066 -87233864 - MER92B LTR ERV1 -521 115 1 821 157 109 55 chrX 75366457 75366843 -87233087 + LTR7 LTR ERV1 1 450 0 12925 120 66 14 chrX 75366939 75367405 -87232525 + PABL_A-int LTR ERV1 1310 1750 -6066 2164 125 0 0 chrX 75367405 75367702 -87232228 + AluSx SINE Alu 11 307 -5 12925 120 66 14 chrX 75367702 75369543 -87230387 + PABL_A-int LTR ERV1 1750 3738 -4078 4437 101 5 5 chrX 75369525 75370169 -87229761 + PABL_A-int LTR ERV1 2212 2855 -2160 * 13167 261 56 27 chrX 75370169 75374023 -87225907 + L1PA15 LINE L1 460 5100 -2484 1553 189 4 0 chrX 75374023 75374288 -87225642 + AluJb SINE Alu 36 301 -11 13167 261 56 27 chrX 75374288 75376025 -87223905 + L1PA15 LINE L1 5100 6785 -799 2819 165 41 0 chrX 75376017 75376509 -87223421 + L1PA15 LINE L1 6998 7509 -94 * 237 65 0 0 chrX 75376525 75376556 -87223374 + (TA)n Simple_repeat Simple_repeat 2 32 0 1094 261 21 62 chrX 75376562 75377033 -87222897 + L1MC4 LINE L1 7591 8042 0 353 222 24 68 chrX 75377141 75377334 -87222596 - L1MDb LINE L1 -4916 1299 1118 1148 153 30 5 chrX 75377560 75377763 -87222167 - L1PA10 LINE L1 -6 6162 5955 387 113 56 0 chrX 75377813 75377884 -87222046 - L1MDb LINE L1 -5267 1129 1055 974 330 71 42 chrX 75377895 75378770 -87221160 - L1MDb LINE L1 -5453 943 44 599 303 60 17 chrX 75378919 75379322 -87220608 - L1M4c LINE L1 -4895 1489 1070 12805 141 9 1 chrX 75379322 75382238 -87217692 - L1PA10 LINE L1 0 6483 3547 1327 211 0 0 chrX 75382238 75382499 -87217431 - AluSx SINE Alu -7 305 45 862 253 0 9 chrX 75382515 75382744 -87217186 - L1PA10 LINE L1 -2925 3536 3310 6644 66 7 56 chrX 75382908 75383930 -87216000 + SVA Other Other 435 1407 0 14913 110 12 12 chrX 75383931 75387151 -87212779 + L1P LINE L1 3075 5096 -1050 281 221 32 0 chrX 75387254 75387349 -87212581 + L1PA15-16 LINE L1 2708 2805 -4044 22 35 0 0 chrX 75391311 75391340 -87208590 + AT_rich Low_complexity Low_complexity 1 29 0 4988 228 7 8 chrX 75392958 75394320 -87205610 + L1M2 LINE L1 2785 4150 -2698 19417 165 12 10 chrX 75394421 75395868 -87204062 - L1P LINE L1 -1451 4695 3253 1813 148 0 0 chrX 75395868 75396132 -87203798 - AluSx SINE Alu -4 308 45 19417 165 12 10 chrX 75396132 75398508 -87201422 - L1P LINE L1 -2893 3253 864 5267 210 24 8 chrX 75398510 75399625 -87200305 - L1PA10 LINE L1 -4742 1133 1 332 224 52 0 chrX 75399808 75399924 -87200006 - L1ME LINE L1 -404 5758 5637 636 277 50 42 chrX 75401126 75401386 -87198544 + MIR SINE MIR 1 262 0 658 184 0 0 chrX 75402534 75402648 -87197282 + Tigger7 DNA MER2_type 1 114 -2373 4913 153 16 3 chrX 75402676 75403583 -87196347 - L1MA6 LINE L1 -5 6295 5377 2412 159 35 11 chrX 75403586 75404019 -87195911 + MSTB2 LTR MaLR 15 457 0 1803 198 5 27 chrX 75404019 75404459 -87195471 - L1MA6 LINE L1 -765 5381 4952 1295 189 12 0 chrX 75404471 75404715 -87195215 + Tigger7 DNA MER2_type 205 451 -282 1839 118 42 21 chrX 75405237 75405526 -87194404 + AluSx SINE Alu 1 295 -17 396 308 51 0 chrX 75405724 75405841 -87194089 - MER5B DNA MER1_type -55 123 1 9929 159 29 10 chrX 75406476 75412073 -87187857 - L1MA3 LINE L1 -1 7723 1972 1736 189 0 0 chrX 75412073 75412359 -87187571 + AluJb SINE Alu 1 286 -26 9929 159 29 10 chrX 75412359 75412490 -87187440 - L1MA3 LINE L1 -5752 1972 1845 942 237 4 7 chrX 75412599 75412877 -87187053 + L1P LINE L1 3168 3444 -2702 6323 75 16 52 chrX 75412891 75414795 -87185135 + SVA Other Other 15 1386 0 201 218 0 55 chrX 75415788 75415843 -87184087 - L2 LINE L2 -1 3271 3220 2025 124 10 7 chrX 75416384 75416683 -87183247 + AluSx SINE Alu 1 300 -12 21 36 0 0 chrX 75417169 75417197 -87182733 + AT_rich Low_complexity Low_complexity 1 28 0 842 323 118 51 chrX 75418280 75419125 -87180805 - L2 LINE L2 -342 2972 2071 331 297 27 27 chrX 75419134 75419282 -87180648 - L2 LINE L2 -1351 1963 1816 642 271 30 30 chrX 75419607 75419876 -87180054 + L1MEd LINE L1 561 829 -5290 2163 204 18 9 chrX 75419886 75420338 -87179592 + MSTB2 LTR MaLR 2 457 0 479 179 28 9 chrX 75420778 75420884 -87179046 + L1PB2 LINE L1 6036 6143 -8 2070 170 55 7 chrX 75420891 75421327 -87178603 - L1MB4 LINE L1 -160 6020 5564 6761 123 14 0 chrX 75421359 75422431 -87177499 + L1P LINE L1 11 1097 -5049 1021 164 18 0 chrX 75424106 75424271 -87175659 + FAM SINE Alu 1 168 -7 16261 35 1 1 chrX 75424798 75426866 -87173064 - L1P LINE L1 -743 5403 3335 21 0 0 0 chrX 75427746 75427767 -87172163 + AT_rich Low_complexity Low_complexity 1 21 0 618 250 83 10 chrX 75429383 75429587 -87170343 - MER20 DNA MER1_type 0 219 1 481 75 50 0 chrX 75429689 75429769 -87170161 - L1 LINE L1 -1616 4530 4447 33 66 0 0 chrX 75430575 75430636 -87169294 + AT_rich Low_complexity Low_complexity 1 61 0 26050 57 1 2 chrX 75432145 75435675 -87164255 + L1P LINE L1 1043 4571 -1575 639 211 0 0 chrX 75435775 75435889 -87164041 - MER2 DNA MER2_type -230 115 2 23 33 0 0 chrX 75436700 75436730 -87163200 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chrX 75436770 75436798 -87163132 + AT_rich Low_complexity Low_complexity 1 28 0 246 254 0 0 chrX 75437137 75437196 -87162734 + (TA)n Simple_repeat Simple_repeat 1 59 0 2249 71 57 0 chrX 75437232 75437515 -87162415 - AluY SINE Alu -12 299 1 668 122 122 8 chrX 75438341 75438472 -87161458 - L1MB3 LINE L1 0 6183 6038 2155 130 0 0 chrX 75440398 75440691 -87159239 + AluSg SINE Alu 3 295 -15 5323 125 30 23 chrX 75440918 75441521 -87158409 - Tigger3b DNA MER2_type -1797 1231 618 2243 118 0 0 chrX 75441521 75441818 -87158112 - AluSq SINE Alu -15 298 2 5323 125 30 23 chrX 75441818 75442158 -87157772 - Tigger3b DNA MER2_type -2410 618 282 658 185 0 0 chrX 75442170 75442289 -87157641 + FLAM_A SINE Alu 12 130 -12 1439 180 83 4 chrX 75442305 75442583 -87157347 - Tigger3b DNA MER2_type -928 303 4 302 257 211 18 chrX 75442624 75442733 -87157197 - MIR SINE MIR -63 145 16 325 264 169 50 chrX 75443241 75443502 -87156428 - L1MC5 LINE L1 -2 7959 7668 1323 136 56 8 chrX 75443524 75443775 -87156155 + AluSq SINE Alu 1 263 -50 26 0 0 0 chrX 75443948 75443974 -87155956 + AT_rich Low_complexity Low_complexity 1 26 0 225 159 0 0 chrX 75444600 75444644 -87155286 + (TA)n Simple_repeat Simple_repeat 2 45 0 1294 226 176 26 chrX 75445045 75445542 -87154388 + MER68 LTR ERV1 3 605 0 27 0 0 0 chrX 75445971 75445998 -87153932 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chrX 75446354 75446382 -87153548 + AT_rich Low_complexity Low_complexity 1 28 0 36 40 0 0 chrX 75447396 75447446 -87152484 + AT_rich Low_complexity Low_complexity 1 50 0 3783 141 44 71 chrX 75448412 75449213 -87150717 + MER4E LTR ERV1 1 779 0 7562 50 5 9 chrX 75449338 75450890 -87149040 + SVA Other Other 37 1386 0 1823 166 90 48 chrX 75450984 75451405 -87148525 + MER4E LTR ERV1 1 439 -327 189 0 0 0 chrX 75451405 75451426 -87148504 + (T)n Simple_repeat Simple_repeat 1 21 0 7077 39 10 3 chrX 75451526 75453047 -87146883 + L1PA4 LINE L1 4628 6155 0 216 0 0 0 chrX 75453203 75453227 -87146703 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 1601 152 0 22 chrX 75453227 75453497 -87146433 - AluJb SINE Alu -48 264 1 21 0 0 0 chrX 75453592 75453613 -87146317 + AT_rich Low_complexity Low_complexity 1 21 0 1724 165 50 3 chrX 75454007 75454328 -87145602 + MER44D DNA MER2_type 3 608 -1 2290 281 78 47 chrX 75454360 75455445 -87144485 + L2 LINE L2 2067 3184 -129 289 253 126 0 chrX 75455522 75455617 -87144313 + L1ME4a LINE L1 5994 6100 -21 865 228 65 0 chrX 75455905 75456089 -87143841 - MER58A DNA MER1_type -28 196 1 1966 135 7 0 chrX 75456123 75456405 -87143525 - AluSx SINE Alu -28 284 1 990 166 52 10 chrX 75456452 75456645 -87143285 - MER2 DNA MER2_type 0 345 145 9588 113 15 37 chrX 75457942 75459431 -87140499 + THE1C-int LTR MaLR 118 1574 -6 1566 159 71 41 chrX 75459437 75459801 -87140129 + THE1C LTR MaLR 1 375 0 27 0 0 0 chrX 75459917 75459944 -87139986 + AT_rich Low_complexity Low_complexity 1 27 0 250 273 11 34 chrX 75459978 75460066 -87139864 + GA-rich Low_complexity Low_complexity 3 88 0 348 212 94 12 chrX 75460881 75460966 -87138964 - MIR SINE MIR -79 183 92 405 0 0 0 chrX 75461000 75461045 -87138885 + (CA)n Simple_repeat Simple_repeat 2 46 0 259 309 77 48 chrX 75461528 75461696 -87138234 - MER5B DNA MER1_type -4 174 2 543 297 0 11 chrX 75461803 75461985 -87137945 - L1PB4 LINE L1 -2 6154 5975 3130 155 47 7 chrX 75462270 75462807 -87137123 - L1M1 LINE L1 -6289 1276 719 1167 149 5 0 chrX 75462810 75463004 -87136926 + L1P5 LINE L1 1 195 -6668 12214 188 58 31 chrX 75463004 75464109 -87135821 + L1P5 LINE L1 1106 2180 -4682 1603 187 7 48 chrX 75464109 75464419 -87135511 - AluSx SINE Alu -13 299 3 12214 188 58 31 chrX 75464419 75467920 -87132010 + L1P5 LINE L1 2180 6056 -806 2834 103 12 0 chrX 75468089 75468507 -87131423 + L1P5 LINE L1 6085 6507 -360 254 109 0 0 chrX 75468528 75468574 -87131356 + LTR66 LTR ERVL 394 439 -171 238 255 0 43 chrX 75468588 75468682 -87131248 - L1MC4 LINE L1 -1339 6703 6614 2553 86 13 5 chrX 75468689 75469061 -87130869 + L1PB1 LINE L1 5777 6151 0 4432 153 25 4 chrX 75469079 75469786 -87130144 - L1M1 LINE L1 -6828 737 16 611 270 110 22 chrX 75469790 75470358 -87129572 - L1MEd LINE L1 -4754 1556 902 268 83 42 0 chrX 75470358 75470406 -87129524 + (TA)n Simple_repeat Simple_repeat 2 51 0 190 314 314 10 chrX 75470797 75470899 -87129031 + L2 LINE L2 3126 3258 -14 201 204 20 0 chrX 75471833 75471882 -87128048 - MIR3 SINE MIR -9 199 150 502 261 15 15 chrX 75472406 75472540 -87127390 - MIR3 SINE MIR -65 143 10 1013 125 6 0 chrX 75472626 75472794 -87127136 - L1MB4 LINE L1 -6 6174 6006 3834 113 30 8 chrX 75472798 75473392 -87126538 + L1PB2 LINE L1 5465 6071 -80 4211 151 35 7 chrX 75473494 75474247 -87125683 - L1PA16 LINE L1 -136 6030 5257 373 335 56 12 chrX 75474250 75474411 -87125519 - MIR SINE MIR -81 181 14 2324 92 0 0 chrX 75474470 75474765 -87125165 + AluSx SINE Alu 1 295 -17 1998 114 4 7 chrX 75474975 75475255 -87124675 + AluSx SINE Alu 1 279 -33 212 0 36 0 chrX 75475259 75475287 -87124643 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 203 241 52 17 chrX 75475328 75475386 -87124544 - L3b LINE CR1 -312 1271 1212 247 283 0 0 chrX 75475428 75475488 -87124442 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 1096 209 156 33 chrX 75476415 75476497 -87123433 - MER2 DNA MER2_type -7 338 267 2166 112 0 0 chrX 75476497 75476811 -87123119 + AluSp SINE Alu 1 314 0 1096 209 156 33 chrX 75476811 75477028 -87122902 - MER2 DNA MER2_type -78 267 1 2344 88 10 3 chrX 75477308 75477615 -87122315 + AluSx SINE Alu 1 309 -3 1191 113 6 23 chrX 75478625 75478802 -87121128 - AluSp SINE Alu -5 308 135 1900 125 17 41 chrX 75478804 75479149 -87120781 + MER4E LTR ERV1 441 777 -2 1019 234 28 5 chrX 75480007 75480225 -87119705 - MER58A DNA MER1_type -1 223 1 2589 169 37 4 chrX 75480737 75481222 -87118708 - L1MB4 LINE L1 -25 6155 5655 25 31 0 0 chrX 75482360 75482392 -87117538 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chrX 75482595 75482624 -87117306 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrX 75483774 75483804 -87116126 + AT_rich Low_complexity Low_complexity 1 30 0 6079 129 47 20 chrX 75484345 75485419 -87114511 + Tigger3b DNA MER2_type 1 1102 -129 1332 162 17 14 chrX 75486303 75486593 -87113337 - AluSg SINE Alu -7 293 3 189 167 0 125 chrX 75487742 75487790 -87112140 + L3 LINE CR1 1530 1571 -6 205 290 74 0 chrX 75490131 75490293 -87109637 + (TA)n Simple_repeat Simple_repeat 1 174 0 * 206 274 16 59 chrX 75490205 75490391 -87109539 + (CATA)n Simple_repeat Simple_repeat 3 180 0 * 240 244 70 23 chrX 75490359 75490531 -87109399 + (TA)n Simple_repeat Simple_repeat 1 180 0 624 318 153 30 chrX 75491726 75492113 -87107817 + L2 LINE L2 2551 2978 -294 328 252 107 33 chrX 75492119 75492316 -87107614 - L2 LINE L2 -5 3308 3014 426 395 51 18 chrX 75492317 75492593 -87107337 + L2 LINE L2 2987 3271 -1 1972 120 0 7 chrX 75494530 75494821 -87105109 + L1MB7 LINE L1 5523 5811 -367 513 0 0 0 chrX 75494821 75494878 -87105052 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 1105 163 108 29 chrX 75494892 75495132 -87104798 + L1MB7 LINE L1 5925 6183 -1 1037 244 137 19 chrX 75495319 75495734 -87104196 - L1ME LINE L1 -298 5823 5362 22 0 0 0 chrX 75495992 75496014 -87103916 + AT_rich Low_complexity Low_complexity 1 22 0 2483 46 7 3 chrX 75496040 75496344 -87103586 + AluY SINE Alu 1 305 -6 1650 115 95 13 chrX 75496375 75496679 -87103251 + MER46B DNA MER2_type 33 236 0 243 316 0 13 chrX 75496947 75497023 -87102907 + GA-rich Low_complexity Low_complexity 2 76 0 2118 89 31 7 chrX 75497279 75497570 -87102360 + AluSc SINE Alu 1 298 -11 6183 34 1 4 chrX 75498120 75498875 -87101055 + L1PA5 LINE L1 5395 6147 -7 601 261 199 28 chrX 75499744 75500066 -87099864 - L2 LINE L2 -78 3235 2773 2517 64 0 0 chrX 75500069 75500367 -87099563 + AluSp SINE Alu 1 298 -15 3058 31 0 24 chrX 75500984 75501367 -87098563 + L1PA5 LINE L1 5775 6148 -6 2286 158 73 5 chrX 75501671 75502070 -87097860 + MSTC LTR MaLR 3 428 0 2015 167 39 11 chrX 75502447 75502694 -87097236 - L1MB7 LINE L1 -9 6986 6720 1389 178 0 8 chrX 75502694 75502935 -87096995 - MER8 DNA MER2_type 0 239 1 2015 167 39 11 chrX 75502935 75503129 -87096801 - L1MB7 LINE L1 -275 6720 6533 7763 215 76 12 chrX 75503410 75504061 -87095869 - L1MB7 LINE L1 -560 6435 5827 180 0 0 0 chrX 75504061 75504081 -87095849 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7763 215 76 12 chrX 75504081 75505606 -87094324 - L1MB7 LINE L1 -1168 5827 4070 1763 190 33 46 chrX 75505606 75506001 -87093929 + MLT1B LTR MaLR 1 390 0 7763 215 76 12 chrX 75506001 75506339 -87093591 - L1MB7 LINE L1 -2925 4070 3755 469 161 37 0 chrX 75506358 75506439 -87093491 - Tigger7 DNA MER2_type -9 2578 2495 * 1388 177 72 4 chrX 75506437 75506686 -87093244 - Tigger7 DNA MER2_type -465 268 3 2199 233 98 11 chrX 75506688 75507440 -87092490 - L1MB7 LINE L1 -3219 3738 2921 2265 238 134 11 chrX 75507443 75508137 -87091793 - L1MB7 LINE L1 -5447 1412 634 328 234 138 35 chrX 75508244 75508389 -87091541 - L1MB7 LINE L1 -6695 164 5 282 339 24 24 chrX 75508613 75508737 -87091193 - MIR3 SINE MIR -32 176 53 508 301 85 0 chrX 75508758 75508911 -87091019 + MIR SINE MIR 9 174 -88 224 30 30 0 chrX 75509028 75509061 -87090869 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2113 105 3 3 chrX 75510021 75510307 -87089623 + AluSq SINE Alu 8 293 -20 518 267 85 55 chrX 75510797 75511033 -87088897 + MIR SINE MIR 11 253 -9 29 28 0 0 chrX 75512097 75512133 -87087797 + AT_rich Low_complexity Low_complexity 1 36 0 1452 141 30 38 chrX 75512547 75512809 -87087121 - AluJb SINE Alu -52 260 1 405 71 0 0 chrX 75514413 75514469 -87085461 + Alu SINE Alu 1 56 -257 399 170 30 0 chrX 75514469 75514569 -87085361 + GA-rich Low_complexity Low_complexity 2 104 0 1099 167 17 90 chrX 75515499 75515787 -87084143 - L1 LINE L1 -1792 4354 4088 868 144 0 0 chrX 75515787 75515912 -87084018 - AluSq/x SINE Alu -187 125 1 576 162 19 0 chrX 75515912 75516017 -87083913 - L1 LINE L1 -2156 3990 3884 467 92 0 0 chrX 75516017 75516082 -87083848 - AluS SINE Alu -247 65 1 4333 211 180 19 chrX 75516082 75517419 -87082511 - L1 LINE L1 -2414 3732 2180 4947 173 41 12 chrX 75517420 75518627 -87081303 + L1MA7 LINE L1 4549 5810 -481 330 26 0 0 chrX 75518627 75518666 -87081264 + (CA)n Simple_repeat Simple_repeat 2 40 0 4947 173 41 12 chrX 75518666 75519162 -87080768 + L1MA7 LINE L1 5810 6290 -1 4830 180 25 46 chrX 75519341 75519751 -87080179 - L1MA4A LINE L1 -23 6280 5863 432 0 0 0 chrX 75519751 75519799 -87080131 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1504 150 4 8 chrX 75519801 75520047 -87079883 - AluJo SINE Alu -31 281 37 4830 180 25 46 chrX 75520047 75520434 -87079496 - L1MA4A LINE L1 -441 5862 5468 2114 120 17 3 chrX 75520434 75520735 -87079195 - AluSx SINE Alu -7 305 1 4830 180 25 46 chrX 75520735 75521043 -87078887 - L1MA4A LINE L1 -835 5468 5155 2126 117 7 3 chrX 75521043 75521341 -87078589 - AluSq SINE Alu -14 299 1 4830 180 25 46 chrX 75521341 75522142 -87077788 - L1MA4A LINE L1 -1148 5155 4285 25 31 0 0 chrX 75523097 75523129 -87076801 + AT_rich Low_complexity Low_complexity 1 32 0 376 84 14 14 chrX 75525105 75525176 -87074754 + (TG)n Simple_repeat Simple_repeat 1 71 0 208 223 11 11 chrX 75525664 75525758 -87074172 + CT-rich Low_complexity Low_complexity 2 95 0 205 310 0 0 chrX 75526014 75526072 -87073858 + CT-rich Low_complexity Low_complexity 3 60 0 1472 277 117 50 chrX 75526447 75527547 -87072383 - L2 LINE L2 0 3313 2005 1375 209 30 41 chrX 75527593 75527986 -87071944 + MLT1B LTR MaLR 1 389 -1 334 338 72 31 chrX 75527990 75528212 -87071718 - L2 LINE L2 -723 2591 2361 26 0 0 0 chrX 75528218 75528244 -87071686 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chrX 75528902 75528948 -87070982 + AT_rich Low_complexity Low_complexity 1 46 0 1574 176 20 23 chrX 75529590 75529896 -87070034 - AluJo SINE Alu -7 305 1 968 273 83 53 chrX 75531541 75532189 -87067741 + L1ME4a LINE L1 5419 6115 -6 977 9 0 0 chrX 75534574 75534685 -87065245 - L1PA5 LINE L1 -309 5846 5736 2441 29 6 26 chrX 75534685 75534993 -87064937 + L1PA5 LINE L1 5839 6145 -9 258 136 0 0 chrX 75735722 75735766 -86864164 + (CAT)n Simple_repeat Simple_repeat 3 46 0 1544 226 30 36 chrX 75735871 75736233 -86863697 - MLT1A1 LTR MaLR -5 360 1 410 368 27 11 chrX 75736234 75736419 -86863511 - MIR SINE MIR -67 195 8 1547 191 132 16 chrX 75736532 75736973 -86862957 + LTR54B LTR ERV1 1 492 -6 279 353 22 10 chrX 75737288 75737458 -86862472 + MIR SINE MIR 8 178 -62 2404 171 12 39 chrX 75737461 75737761 -86862169 + L1PA16 LINE L1 5692 5976 -190 2224 111 16 0 chrX 75737761 75738068 -86861862 + AluSx SINE Alu 1 312 0 2404 171 12 39 chrX 75738068 75738253 -86861677 + L1PA16 LINE L1 5976 6164 -2 198 273 0 0 chrX 75738348 75738403 -86861527 + MIR SINE MIR 168 222 -40 1942 192 11 0 chrX 75738611 75739202 -86860728 - L1M1 LINE L1 -743 5403 4934 4095 162 22 9 chrX 75739202 75739976 -86859954 + L1MA3 LINE L1 5500 6286 -19 * 7620 26 3 0 chrX 75739973 75741345 -86858585 + L1PA3 LINE L1 4828 6202 0 191 303 79 40 chrX 75741597 75741673 -86858257 - L2 LINE L2 -8 3264 3186 331 355 9 0 chrX 75742039 75742149 -86857781 + MIR SINE MIR 40 150 -58 569 340 33 14 chrX 75742450 75742665 -86857265 - MIR SINE MIR -6 256 38 2231 129 5 30 chrX 75743288 75743659 -86856271 - THE1B LTR MaLR -2 362 1 11517 104 1 1 chrX 75743659 75745237 -86854693 - THE1B-int LTR MaLR 0 1580 2 2260 146 8 22 chrX 75745238 75745607 -86854323 - THE1B LTR MaLR 0 364 1 1919 181 18 3 chrX 75745835 75746178 -86853752 - MER7A DNA MER2_type 0 346 1 739 287 49 20 chrX 75746538 75746782 -86853148 + MIR SINE MIR 3 253 -9 238 261 43 0 chrX 75747264 75747333 -86852597 - MIR SINE MIR -148 114 43 305 352 145 11 chrX 75747384 75747563 -86852367 + L3 LINE CR1 1361 1563 -14 1052 271 10 29 chrX 75748603 75748987 -86850943 + L1M4 LINE L1 3980 4356 -1790 254 250 0 0 chrX 75749030 75749126 -86850804 + L1M4 LINE L1 4342 4437 -1709 821 298 71 71 chrX 75749599 75749794 -86850136 + MLT1K LTR MaLR 103 297 -291 2290 140 22 6 chrX 75749794 75750152 -86849778 - THE1B LTR MaLR 0 364 1 821 298 71 71 chrX 75750152 75750436 -86849494 + MLT1K LTR MaLR 296 582 -6 213 337 57 12 chrX 75750993 75751080 -86848850 - MIR SINE MIR -64 144 53 1936 112 10 0 chrX 75751257 75751552 -86848378 - L1PA13 LINE L1 0 6163 5866 226 65 22 22 chrX 75751890 75751936 -86847994 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 5319 212 52 12 chrX 75752128 75754553 -86845377 - L1PB3 LINE L1 -3 6867 4336 246 200 20 0 chrX 75754558 75754608 -86845322 - THE1A LTR MaLR -1 354 304 8491 132 9 2 chrX 75754609 75755864 -86844066 - THE1B-int LTR MaLR -317 1263 1 2018 142 60 26 chrX 75755864 75756216 -86843714 - THE1B LTR MaLR 0 364 1 2474 241 37 36 chrX 75756217 75756907 -86843023 - L1PB3 LINE L1 -2527 4335 3642 2344 81 0 0 chrX 75756907 75757202 -86842728 - AluY SINE Alu -16 295 1 2474 241 37 36 chrX 75757202 75757455 -86842475 - L1PB3 LINE L1 -3220 3642 3391 245 384 0 0 chrX 75757442 75757588 -86842342 - L1 LINE L1 -3227 3635 3490 * 761 99 9 0 chrX 75757588 75757699 -86842231 - L1PA8 LINE L1 -8 6164 6053 4536 252 32 31 chrX 75757699 75757916 -86842014 - L1PB3 LINE L1 -5219 1644 1429 273 98 0 0 chrX 75757916 75757957 -86841973 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4536 252 32 31 chrX 75757957 75760249 -86839681 - L1PB3 LINE L1 -5434 1429 3 34559 45 2 0 chrX 75760603 75765700 -86834230 + L1PA4 LINE L1 1049 6153 -2 1826 191 27 5 chrX 75766211 75766587 -86833343 - L1PA16 LINE L1 0 6166 5783 2120 148 46 34 chrX 75766587 75767131 -86832799 + MLT2A2 LTR ERVL 2 554 0 5135 205 11 10 chrX 75767131 75768827 -86831103 - L1PA16 LINE L1 -382 5784 4090 693 157 0 0 chrX 75768837 75768945 -86830985 + L1P LINE L1 4116 4223 -1923 22 35 0 0 chrX 75769188 75769217 -86830713 + AT_rich Low_complexity Low_complexity 1 29 0 265 235 10 41 chrX 75769300 75769398 -86830532 - LTR37B LTR ERV1 -176 292 198 2087 109 0 3 chrX 75770737 75771066 -86828864 - AluSx SINE Alu 0 328 1 1917 132 54 0 chrX 75772040 75772336 -86827594 - AluSx SINE Alu 0 312 1 5837 180 22 5 chrX 75772602 75774217 -86825713 - L1MA3 LINE L1 -3 7721 6076 5424 54 31 0 chrX 75774220 75774918 -86825012 - LTR30 LTR ERV1 -2 720 1 11168 116 7 2 chrX 75774918 75776549 -86823381 - HERV30 LTR ERV1 0 8257 6619 * 14357 148 17 25 chrX 75776533 75777251 -86822679 - HERV30 LTR ERV1 -1858 6399 5677 1726 38 9 0 chrX 75777251 75777464 -86822466 + L1PA4 LINE L1 5939 6153 -2 14357 148 17 25 chrX 75777464 75778310 -86821620 - HERV30 LTR ERV1 -2580 5677 4826 180 0 0 0 chrX 75778310 75778330 -86821600 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 14357 148 17 25 chrX 75778330 75778439 -86821491 - HERV30 LTR ERV1 -3431 4826 4718 2895 16 0 0 chrX 75778439 75778757 -86821173 + AluYb8 SINE Alu 1 318 0 14357 148 17 25 chrX 75778757 75779514 -86820416 - HERV30 LTR ERV1 -3539 4718 3985 5759 87 5 6 chrX 75779513 75780299 -86819631 - HERV30 LTR ERV1 -7472 785 1 * 5325 65 32 0 chrX 75780303 75780997 -86818933 - LTR30 LTR ERV1 -6 716 1 14529 179 34 15 chrX 75780997 75781918 -86818012 - L1MA3 LINE L1 -1487 6078 5176 1820 158 133 21 chrX 75781918 75782303 -86817627 + MSTA LTR MaLR 1 428 0 14529 179 34 15 chrX 75782303 75782829 -86817101 - L1MA3 LINE L1 -2389 5176 4662 2022 149 7 3 chrX 75782829 75783138 -86816792 + AluSx SINE Alu 3 312 0 14529 179 34 15 chrX 75783138 75787576 -86812354 - L1MA3 LINE L1 -2903 4662 91 180 0 0 0 chrX 75787576 75787596 -86812334 + (TG)n Simple_repeat Simple_repeat 2 21 0 14529 179 34 15 chrX 75787596 75787676 -86812254 - L1MA3 LINE L1 -7474 91 14 245 255 41 61 chrX 75787815 75787913 -86812017 - MIR SINE MIR -71 191 96 4788 226 109 76 chrX 75787983 75790342 -86809588 + L1MB7 LINE L1 2762 5270 -889 2393 81 3 0 chrX 75790342 75790639 -86809291 + AluSp SINE Alu 1 298 -15 4788 226 109 76 chrX 75790639 75790850 -86809080 + L1MB7 LINE L1 5270 5472 -687 3144 194 16 10 chrX 75790916 75791348 -86808582 + L1MB7 LINE L1 5486 5925 -259 1562 226 18 9 chrX 75791348 75791689 -86808241 - MER2 DNA MER2_type 0 344 1 3144 194 16 10 chrX 75791689 75791951 -86807979 + L1MB7 LINE L1 5925 6184 0 24 32 0 0 chrX 75791981 75792012 -86807918 + AT_rich Low_complexity Low_complexity 1 31 0 470 294 50 31 chrX 75792791 75792951 -86806979 + MIR3 SINE MIR 21 183 -25 5996 106 38 3 chrX 75793758 75794824 -86805106 - L1PA12 LINE L1 -1 6167 5079 9090 67 10 12 chrX 75794824 75796047 -86803883 + L1PA7 LINE L1 4109 5332 -822 2334 106 0 0 chrX 75796047 75796358 -86803572 + AluY SINE Alu 1 311 0 9090 67 10 12 chrX 75796358 75796835 -86803095 + L1PA7 LINE L1 5332 5809 -345 1080 71 0 0 chrX 75796849 75796990 -86802940 + L1PA7 LINE L1 6009 6149 -5 394 338 62 7 chrX 75797321 75797466 -86802464 + MIR3 SINE MIR 35 187 -21 27 49 0 0 chrX 75798581 75798622 -86801308 + AT_rich Low_complexity Low_complexity 1 41 0 249 194 0 32 chrX 75798827 75798889 -86801041 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 346 341 24 0 chrX 75798904 75799027 -86800903 - L2 LINE L2 -1035 2279 2154 1693 224 71 18 chrX 75799079 75799531 -86800399 - L1MD3 LINE L1 -112 7883 7408 574 228 31 0 chrX 75799531 75799658 -86800272 - MLT1F1 LTR MaLR -436 131 1 1072 237 83 3 chrX 75799659 75799997 -86799933 - L1MD3 LINE L1 -718 7277 6913 217 357 113 35 chrX 75800055 75800721 -86799209 - L2 LINE L2 -1231 2083 1366 622 303 56 6 chrX 75800775 75800953 -86798977 + MLT1E LTR MaLR 370 556 -37 7499 30 2 0 chrX 75800971 75802621 -86797309 + L1PA3 LINE L1 4514 6165 0 260 143 0 0 chrX 75802624 75802666 -86797264 - L1MB7 LINE L1 -12 6172 6131 244 184 20 0 chrX 75802887 75802936 -86796994 + MLT1F LTR MaLR 490 539 -3 3186 62 65 2 chrX 75804131 75804171 -86795759 - MLT2A1 LTR ERVL 0 444 408 531 0 0 0 chrX 75804171 75804230 -86795700 + (TA)n Simple_repeat Simple_repeat 2 60 0 297 0 0 0 chrX 75804229 75804262 -86795668 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 3186 62 65 2 chrX 75804230 75804639 -86795291 - MLT2A1 LTR ERVL -36 408 1 1329 236 0 8 chrX 75805179 75805442 -86794488 - ERVL LTR ERVL -2319 3445 3185 2137 121 3 3 chrX 75805478 75805791 -86794139 - AluSq SINE Alu 0 313 1 611 217 0 0 chrX 75805795 75805910 -86794020 - ERVL LTR ERVL -2574 3190 3076 7398 33 2 1 chrX 75806205 75807103 -86792827 + L1PA4 LINE L1 5254 6152 -3 25 51 0 0 chrX 75808837 75808876 -86791054 + AT_rich Low_complexity Low_complexity 1 39 0 245 333 11 54 chrX 75809104 75809197 -86790733 + L2 LINE L2 3174 3262 -10 531 206 58 58 chrX 75809480 75809635 -86790295 + L1MC3 LINE L1 5429 5583 -2202 * 42928 30 21 1 chrX 75809634 75815665 -86784265 + L1HS LINE L1 1 6155 0 3876 230 36 43 chrX 75815673 75816850 -86783080 + L1MC3 LINE L1 5571 6738 -1047 2240 278 38 51 chrX 75816871 75817635 -86782295 + L1M3b LINE L1 9 762 -5519 3093 284 52 44 chrX 75817652 75818941 -86780989 + L1M3b LINE L1 566 1554 -4796 1604 218 7 7 chrX 75818941 75819249 -86780681 + AluJb SINE Alu 3 310 -2 3093 284 52 44 chrX 75819249 75820075 -86779855 + L1M3b LINE L1 1554 2372 -3978 8970 218 52 15 chrX 75820094 75820248 -86779682 + L1M3b LINE L1 2482 2629 -3721 2207 187 29 5 chrX 75820248 75820666 -86779264 - MSTA LTR MaLR 0 428 1 8122 199 35 12 chrX 75820666 75820746 -86779184 - MSTA-int LTR MaLR 0 1651 1574 2115 139 0 3 chrX 75820746 75821049 -86778881 - AluSp SINE Alu -11 302 1 8122 199 35 12 chrX 75821049 75822582 -86777348 - MSTA-int LTR MaLR -77 1574 1 2360 157 29 5 chrX 75822585 75823000 -86776930 - MSTA LTR MaLR -3 425 1 8970 218 52 15 chrX 75823000 75823561 -86776369 + L1M3b LINE L1 2630 3169 -3181 1314 233 45 0 chrX 75823561 75823678 -86776252 + AluJb SINE Alu 3 113 -199 240 35 0 0 chrX 75823678 75823707 -86776223 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1314 233 45 0 chrX 75823707 75823877 -86776053 + AluJb SINE Alu 113 303 -9 8970 218 52 15 chrX 75823877 75825604 -86774326 + L1M3b LINE L1 3169 5021 -1329 2228 226 15 8 chrX 75825618 75826145 -86773785 + L1MC3 LINE L1 7229 7759 -26 227 326 116 0 chrX 75827365 75827451 -86772479 - L2 LINE L2 -8 3305 3210 1760 153 53 20 chrX 75827574 75827875 -86772055 - AluSx SINE Alu -1 311 1 281 376 107 24 chrX 75827891 75828181 -86771749 + L2 LINE L2 2825 3138 -175 22 0 0 0 chrX 75828205 75828227 -86771703 + AT_rich Low_complexity Low_complexity 1 22 0 1790 177 19 0 chrX 75828256 75828618 -86771312 - L1MA3 LINE L1 0 6305 5937 3361 179 24 29 chrX 75828618 75829535 -86770395 + L1PA15 LINE L1 2867 3783 -3782 5102 176 27 7 chrX 75829579 75830932 -86768998 + L1PA15 LINE L1 6203 7581 -3 556 242 0 0 chrX 75830934 75831062 -86768868 + L1PA16 LINE L1 6023 6150 -16 * 3137 222 36 14 chrX 75831045 75831886 -86768044 + L1 LINE L1 3756 4614 -1532 858 221 21 5 chrX 75831884 75832074 -86767856 - L1 LINE L1 -1894 4252 4060 * 238 105 40 26 chrX 75832087 75832163 -86767767 + (TA)n Simple_repeat Simple_repeat 1 77 0 255 103 0 0 chrX 75832232 75832271 -86767659 - L1 LINE L1 -1356 4790 4752 410 131 0 40 chrX 75832310 75832409 -86767521 + (TA)n Simple_repeat Simple_repeat 2 96 0 1604 226 7 20 chrX 75832409 75832855 -86767075 + L1 LINE L1 4803 5242 -904 615 189 63 29 chrX 75832831 75833006 -86766924 + L1P5 LINE L1 5355 5535 -621 * 2393 140 11 3 chrX 75833077 75833449 -86766481 - THE1C LTR MaLR 0 375 1 9184 142 32 36 chrX 75833449 75835036 -86764894 - THE1C-int LTR MaLR 0 1580 1 1613 133 24 0 chrX 75835036 75835284 -86764646 - THE1C LTR MaLR 0 375 122 4028 240 49 98 chrX 75835287 75835874 -86764056 - MER52A LTR ERV1 -4 1751 1137 1996 183 33 25 chrX 75835874 75836235 -86763695 + THE1B LTR MaLR 1 364 0 4028 240 49 98 chrX 75836235 75837431 -86762499 - MER52A LTR ERV1 -618 1137 56 291 219 31 0 chrX 75838220 75838284 -86761646 - MER52A LTR ERV1 -1689 66 1 1277 156 5 0 chrX 75838284 75838483 -86761447 - MER52A-int LTR ERV1 0 7091 6892 456 113 28 0 chrX 75838470 75838541 -86761389 - MER52A-int LTR ERV1 -449 5497 5425 * 1400 196 262 14 chrX 75838525 75838949 -86760981 - MER52A-int LTR ERV1 -1231 4715 4187 * 1503 150 42 29 chrX 75838927 75839234 -86760696 - MER52A-int LTR ERV1 -2948 2998 2688 * 1834 152 13 3 chrX 75839232 75839535 -86760395 - MER52A-int LTR ERV1 -3981 2282 1977 764 166 40 33 chrX 75839547 75839698 -86760232 - MER52A-int LTR ERV1 -4805 1141 990 5310 152 20 26 chrX 75839760 75840695 -86759235 - MER52A-int LTR ERV1 -5414 1791 717 9355 142 27 8 chrX 75840696 75842110 -86757820 - MER52A-int LTR ERV1 -3891 3200 1761 3526 116 25 71 chrX 75842247 75842842 -86757088 - MER52A-int LTR ERV1 -6520 571 4 6308 206 68 78 chrX 75842844 75844464 -86755466 - MER52A LTR ERV1 0 1755 153 330 169 15 0 chrX 75845240 75845305 -86754625 - MER52A LTR ERV1 -1689 66 1 818 78 43 0 chrX 75845309 75845424 -86754506 - THE1C LTR MaLR -253 122 3 5819 160 19 8 chrX 75845424 75846449 -86753481 + L1MA3 LINE L1 5270 6305 0 3928 251 28 7 chrX 75846466 75847939 -86751991 - L1M1 LINE L1 -5362 2203 12 189 299 24 94 chrX 75848138 75848258 -86751672 - L2 LINE L2 -214 3058 2948 569 309 58 21 chrX 75848258 75848501 -86751429 + MIR SINE MIR 2 253 -9 1400 290 35 20 chrX 75849292 75849398 -86750532 + Charlie1a DNA MER1_type 12 115 -2646 1749 198 55 9 chrX 75849398 75849746 -86750184 + MLT1A1 LTR MaLR 1 364 -1 1400 290 35 20 chrX 75849746 75850091 -86749839 + Charlie1a DNA MER1_type 115 470 -985 13330 184 36 9 chrX 75850333 75856218 -86743712 - L1PB1 LINE L1 -43 6824 636 1068 175 21 0 chrX 75856223 75856412 -86743518 - L1PB1 LINE L1 -6668 195 3 2915 217 42 47 chrX 75856424 75857428 -86742502 + Charlie1a DNA MER1_type 457 1455 0 1874 149 214 8 chrX 75858093 75858448 -86741482 + MSTA LTR MaLR 1 428 0 1385 221 96 19 chrX 75858448 75858764 -86741166 + MLT2C1 LTR ERVL 4 353 -44 333 0 0 0 chrX 75858764 75858801 -86741129 + (TG)n Simple_repeat Simple_repeat 2 38 0 1385 221 96 19 chrX 75858801 75858850 -86741080 + MLT2C1 LTR ERVL 353 397 0 1500 254 57 8 chrX 75858870 75859224 -86740706 + ERVL LTR ERVL 3051 3421 -2343 * 1888 224 13 3 chrX 75859222 75859611 -86740319 + ERVL LTR ERVL 3680 4072 -1692 3393 224 27 0 chrX 75859615 75860281 -86739649 + ERVL LTR ERVL 4188 4871 -893 225 65 0 0 chrX 75860296 75860327 -86739603 + (TG)n Simple_repeat Simple_repeat 1 31 0 600 283 74 0 chrX 75860422 75860666 -86739264 + L1MDb LINE L1 887 1148 -5261 2479 147 17 2 chrX 75860672 75861079 -86738851 + L1MA1 LINE L1 5598 6010 -292 520 291 66 96 chrX 75861098 75861555 -86738375 + MLT1H LTR MaLR 95 537 -12 648 240 189 14 chrX 75862264 75862635 -86737295 - Zaphod DNA AcHobo -1 4030 3595 24 32 0 0 chrX 75862643 75862674 -86737256 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chrX 75862769 75862812 -86737118 + AT_rich Low_complexity Low_complexity 1 43 0 1291 236 31 8 chrX 75862865 75863251 -86736679 + L1 LINE L1 4149 4543 -1603 7599 153 15 14 chrX 75863443 75864719 -86735211 - Tigger1 DNA MER2_type -29 2389 1113 2704 97 21 8 chrX 75864723 75865096 -86734834 + MLT2A1 LTR ERVL 1 378 -66 515 97 0 75 chrX 75865115 75865208 -86734722 + Tigger1 DNA MER2_type 1725 1810 -608 257 0 30 0 chrX 75865237 75865270 -86734660 + (TA)n Simple_repeat Simple_repeat 2 35 0 373 100 4 65 chrX 75865310 75865401 -86734529 + MLT2A2 LTR ERVL 399 453 0 * 1066 181 33 9 chrX 75865401 75865589 -86734341 - Tigger1 DNA MER2_type -1300 1118 926 356 179 60 0 chrX 75916081 75916104 -86683826 - L1MA4A LINE L1 -27 6276 6254 1549 213 6 3 chrX 75916104 75916428 -86683502 - L1PB4 LINE L1 -38 6118 5794 204 325 38 0 chrX 75916775 75916855 -86683075 - MIR SINE MIR -46 216 134 203 337 22 11 chrX 75916821 75916913 -86683017 + MIR SINE MIR 133 225 -37 * 210 268 0 0 chrX 75916971 75917027 -86682903 + (TTA)n Simple_repeat Simple_repeat 1 56 0 309 26 0 0 chrX 75917111 75917149 -86682781 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 31 0 0 0 chrX 75917430 75917461 -86682469 + AT_rich Low_complexity Low_complexity 1 31 0 328 186 47 0 chrX 75917510 75917682 -86682248 + (TA)n Simple_repeat Simple_repeat 1 180 0 966 233 17 127 chrX 75918037 75918247 -86681683 + MLT1A2 LTR MaLR 1 144 -230 231 36 0 0 chrX 75918247 75918275 -86681655 + (TG)n Simple_repeat Simple_repeat 2 29 0 966 233 17 127 chrX 75918275 75918480 -86681450 + MLT1A2 LTR MaLR 144 370 -4 252 43 149 21 chrX 75918628 75918675 -86681255 - MER51D LTR ERV1 -76 581 529 20344 97 7 3 chrX 75919528 75922377 -86677553 + L1P LINE L1 107 2967 -3179 1624 204 53 46 chrX 75923218 75923611 -86676319 - MSTB1 LTR MaLR 0 432 37 23315 43 1 0 chrX 75923799 75927452 -86672478 + L1PA4 LINE L1 2500 6154 -1 1375 165 43 81 chrX 75927455 75927629 -86672301 + MER41C LTR ERV1 245 403 -151 1752 184 0 32 chrX 75927629 75927945 -86671985 - AluSx SINE Alu -6 306 1 1375 165 43 81 chrX 75927945 75928092 -86671838 + MER41C LTR ERV1 403 554 0 1349 234 97 64 chrX 75929101 75929552 -86670378 - MLT1D LTR MaLR 0 505 40 552 95 42 11 chrX 75929552 75929647 -86670283 + MER4A LTR ERV1 1 98 -566 1767 162 3 22 chrX 75929647 75929999 -86669931 + MER4A LTR ERV1 261 664 0 2664 101 86 14 chrX 75930002 75930644 -86669286 + MER4A-int LTR ERV1 1 806 -5792 251 145 29 101 chrX 75930678 75930747 -86669183 + MER4-int LTR ERV1 687 750 -5848 6537 142 85 38 chrX 75930821 75930939 -86668991 + MER4-int LTR ERV1 993 1104 -5494 444 51 0 0 chrX 75930939 75930998 -86668932 + (TG)n Simple_repeat Simple_repeat 2 60 0 6537 142 85 38 chrX 75930998 75931855 -86668075 + MER4-int LTR ERV1 1104 2059 -4539 2217 114 0 0 chrX 75931855 75932145 -86667785 + AluSc SINE Alu 1 290 -19 6537 142 85 38 chrX 75932145 75932604 -86667326 + MER4-int LTR ERV1 2059 2495 -4103 1176 175 83 12 chrX 75932604 75932844 -86667086 - LTR8 LTR ERV1 -434 257 1 1913 170 0 3 chrX 75932864 75933153 -86666777 - AluSq SINE Alu -25 288 1 2670 132 84 11 chrX 75933157 75933716 -86666214 + MER4-int LTR ERV1 2731 3330 -3268 * 7909 118 55 17 chrX 75933702 75935093 -86664837 + MER4-int LTR ERV1 3912 5354 -1244 387 148 31 16 chrX 75935127 75935255 -86664675 + (TA)n Simple_repeat Simple_repeat 1 130 0 394 310 174 19 chrX 75936288 75936477 -86663453 + L3 LINE CR1 1317 1544 -33 2414 137 65 10 chrX 75936477 75936879 -86663051 - MSTA LTR MaLR -2 426 3 394 310 174 19 chrX 75936879 75936902 -86663028 + L3 LINE CR1 1544 1562 -15 1677 263 29 0 chrX 75936988 75937407 -86662523 + L2 LINE L2 1906 2336 -978 587 250 0 49 chrX 75937419 75937583 -86662347 + L1MDa LINE L1 21 176 -6364 1119 227 4 25 chrX 75937589 75937831 -86662099 + L1MDa LINE L1 251 487 -6053 289 332 111 14 chrX 75938197 75938414 -86661516 - MARNA DNA Mariner -199 387 150 822 130 0 0 chrX 75938485 75938616 -86661314 + (TG)n Simple_repeat Simple_repeat 2 132 0 189 74 0 0 chrX 75940012 75940039 -86659891 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 222 37 0 0 chrX 75941473 75941500 -86658430 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chrX 75942709 75942737 -86657193 + AT_rich Low_complexity Low_complexity 1 28 0 4146 142 19 11 chrX 75942917 75943649 -86656281 + L1MA4A LINE L1 5566 6303 0 208 232 43 72 chrX 75944073 75944142 -86655788 + MIR SINE MIR 27 93 -115 186 118 0 0 chrX 75944186 75944220 -86655710 + (CAT)n Simple_repeat Simple_repeat 2 35 0 287 262 29 10 chrX 75944498 75944601 -86655329 + L1ME4a LINE L1 5555 5659 -462 10546 89 9 2 chrX 75944605 75946102 -86653828 - L1PA7 LINE L1 -1610 4536 3030 3793 78 1 0 chrX 75946102 75947567 -86652363 + L1PA7 LINE L1 4536 6152 -2 324 234 117 32 chrX 75947596 75947784 -86652146 + L1ME4a LINE L1 5701 5904 -217 405 263 11 141 chrX 75948219 75948482 -86651448 + MIR SINE MIR 30 260 -2 422 268 5 98 chrX 75948630 75948824 -86651106 + MIR3 SINE MIR 25 200 -8 284 68 0 23 chrX 75949107 75949114 -86650816 + (CA)n Simple_repeat Simple_repeat 1 49 0 284 68 0 23 chrX 75949114 75949158 -86650772 + (CA)n Simple_repeat Simple_repeat 2 44 0 271 414 7 14 chrX 75950723 75950863 -86649067 - MER5A DNA MER1_type -49 140 2 401 324 36 14 chrX 75950978 75951117 -86648813 - MER5A DNA MER1_type -1 188 47 5833 102 1 7 chrX 75951306 75952192 -86647738 - L1P LINE L1 -2193 3953 3073 1318 74 14 24 chrX 75952193 75952339 -86647591 + L1P1 LINE L1 5214 5360 -795 7551 26 0 0 chrX 75952339 75953543 -86646387 - L1PA4 LINE L1 -5 6150 4942 1318 74 14 24 chrX 75953543 75953555 -86646375 + L1P1 LINE L1 5360 5371 -784 6063 19 0 0 chrX 75953555 75954246 -86645684 - L1PA3 LINE L1 0 6155 5465 1318 74 14 24 chrX 75954246 75954335 -86645595 + L1PA3 LINE L1 5371 5460 -695 * 6978 31 0 6 chrX 75954329 75955157 -86644773 - L1PA4 LINE L1 -1189 4957 4133 5761 82 24 0 chrX 75955157 75955939 -86643991 + L1PA7 LINE L1 5352 6154 0 6978 31 0 6 chrX 75955939 75955952 -86643978 - L1PA4 LINE L1 -2013 4133 4121 1078 274 70 38 chrX 75956247 75956846 -86643084 - L1MC4 LINE L1 -185 7857 7240 7778 17 0 0 chrX 75956887 75957977 -86641953 - L1PA2 LINE L1 -3 6152 5063 16023 127 16 4 chrX 75957977 75960423 -86639507 + MER57B-int LTR ERV1 4674 7148 -389 486 181 23 68 chrX 75960425 75960558 -86639372 + LTR54B LTR ERV1 5 131 -367 726 108 137 6 chrX 75960558 75960762 -86639168 + MER57B-int LTR ERV1 7279 7537 0 2641 114 43 14 chrX 75960763 75961184 -86638746 + MER57B LTR ERV1 2 434 0 2250 213 69 2 chrX 75961411 75961965 -86637965 - L1MA9 LINE L1 -95 6217 5627 276 100 0 0 chrX 75961966 75962006 -86637924 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 877 253 35 8 chrX 75962100 75962361 -86637569 - L1MB7 LINE L1 -10 6174 5907 17005 134 14 29 chrX 75962478 75965349 -86634581 + L1PA7 LINE L1 11 2840 -3306 24 32 0 0 chrX 75965387 75965418 -86634512 + AT_rich Low_complexity Low_complexity 1 31 0 17878 90 12 0 chrX 75965455 75968763 -86631167 + L1PA7 LINE L1 2831 6150 -4 22 56 0 0 chrX 75969022 75969058 -86630872 + AT_rich Low_complexity Low_complexity 1 36 0 280 244 53 60 chrX 75969364 75969528 -86630402 + MIR SINE MIR 45 206 -56 686 229 133 0 chrX 75970151 75970317 -86629613 - MER5A DNA MER1_type 0 189 2 346 287 47 33 chrX 75970896 75971046 -86628884 - L2 LINE L2 -999 2315 2164 546 290 35 18 chrX 75971048 75971217 -86628713 - MER5B DNA MER1_type -1 177 6 223 169 0 34 chrX 75971251 75971310 -86628620 + GA-rich Low_complexity Low_complexity 1 57 0 478 293 0 0 chrX 75971432 75971572 -86628358 + MLT1D LTR MaLR 248 387 -118 2270 121 0 0 chrX 75971608 75971915 -86628015 + AluSg SINE Alu 1 307 -3 271 358 71 53 chrX 75972108 75972613 -86627317 - L2 LINE L2 -2493 821 308 448 340 6 6 chrX 75972722 75972884 -86627046 + MIR SINE MIR 38 199 -63 30 27 0 0 chrX 75972964 75973001 -86626929 + AT_rich Low_complexity Low_complexity 1 37 0 468 183 67 0 chrX 75973001 75973121 -86626809 - L1MA7 LINE L1 -3 6288 6161 343 236 35 17 chrX 75973159 75973416 -86626514 + (TA)n Simple_repeat Simple_repeat 1 261 0 196 262 0 0 chrX 75973434 75973476 -86626454 - MIR SINE MIR -109 153 112 1873 178 15 3 chrX 75973550 75973887 -86626043 + MER7A DNA MER2_type 1 339 -7 4960 137 14 6 chrX 75973927 75974730 -86625200 - L1PA13 LINE L1 0 6163 5355 270 277 36 0 chrX 75975051 75975134 -86624796 + MIR SINE MIR 116 201 -61 3607 159 12 9 chrX 75975475 75976124 -86623806 - L1PA16 LINE L1 -1 6165 5515 5335 124 17 41 chrX 75976127 75977055 -86622875 - L1PA10 LINE L1 -4 6867 5962 2074 237 20 80 chrX 75977101 75977919 -86622011 + L1P3 LINE L1 566 1334 -5127 2173 174 13 15 chrX 75977933 75978388 -86621542 + L1P3 LINE L1 1488 1941 -4510 4191 136 20 13 chrX 75978423 75979131 -86620799 + L1PA11 LINE L1 5461 6173 -1 1343 193 4 8 chrX 75979151 75979394 -86620536 + MSTA LTR MaLR 187 428 0 1690 174 30 9 chrX 75979394 75979727 -86620203 - L1PA10 LINE L1 -2083 4766 4427 189 0 0 0 chrX 75979729 75979750 -86620180 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4454 246 36 23 chrX 75979750 75981414 -86618516 - L1PA10 LINE L1 -2638 4211 2511 2100 85 0 0 chrX 75981414 75981672 -86618258 + AluY SINE Alu 39 296 -15 4454 246 36 23 chrX 75981672 75982242 -86617688 - L1PA10 LINE L1 -4338 2511 1950 661 167 0 9 chrX 75982242 75982350 -86617580 - U6 snRNA snRNA 0 107 1 30 59 0 0 chrX 75982852 75982903 -86617027 + AT_rich Low_complexity Low_complexity 1 51 0 1189 274 78 43 chrX 75983162 75983268 -86616662 - L1MC4 LINE L1 -6 8036 7935 204 40 0 0 chrX 75983268 75983293 -86616637 + (TC)n Simple_repeat Simple_repeat 1 25 0 1189 274 78 43 chrX 75983293 75983791 -86616139 - L1MC4 LINE L1 -107 7935 7411 351 160 0 96 chrX 75983788 75983882 -86616048 - L1MD3 LINE L1 -85 7910 7826 * 294 271 0 0 chrX 75983896 75984003 -86615927 + CT-rich Low_complexity Low_complexity 3 109 0 13326 106 6 0 chrX 75984141 75986091 -86613839 - L1P LINE L1 -874 5272 3312 10772 260 31 42 chrX 75986089 75987735 -86612195 - L1P LINE L1 -749 5397 3735 * 2026 161 30 3 chrX 75987735 75988096 -86611834 - L1PA15 LINE L1 -8 6157 5787 10772 260 31 42 chrX 75988096 75990922 -86609008 - L1P LINE L1 -2411 3735 973 283 309 83 29 chrX 75991832 75992082 -86607848 - L1PA12 LINE L1 -6534 1051 52 683 306 110 27 chrX 75992086 75992113 -86607817 - L1M4 LINE L1 -1318 4828 4805 2549 105 0 31 chrX 75992113 75992505 -86607425 - L1PA7 LINE L1 0 6154 5775 683 306 110 27 chrX 75992505 75993097 -86606833 - L1M4 LINE L1 -1341 4805 4158 7570 33 0 0 chrX 75993595 75994838 -86605092 + L1PA4 LINE L1 4913 6155 0 242 344 11 0 chrX 75994869 75994959 -86604971 + L1ME4a LINE L1 5738 5828 -293 286 227 98 31 chrX 75995131 75995294 -86604636 + L1ME4a LINE L1 5943 6116 -5 1865 216 64 29 chrX 75995954 75996407 -86603523 + MLT2B1 LTR ERVL 1 469 -51 330 138 0 0 chrX 75996423 75996481 -86603449 + (CA)n Simple_repeat Simple_repeat 1 58 0 3765 252 64 80 chrX 75996520 75998087 -86601843 + ERVL-B1 LTR ERVL 2 1542 -4222 * 18551 222 34 12 chrX 75998082 76000231 -86599699 + ERVL-B1 LTR ERVL 1744 4018 -1746 950 236 71 68 chrX 76000231 76000625 -86599305 - MSTD LTR MaLR 0 396 2 18551 222 34 12 chrX 76000625 76002391 -86597539 + ERVL-B1 LTR ERVL 4018 5744 -20 1722 234 88 20 chrX 76002404 76002891 -86597039 + MLT2B1 LTR ERVL 1 520 0 2119 287 71 77 chrX 76003152 76004468 -86595462 + L1MCc LINE L1 31 1340 -5083 1155 205 41 68 chrX 76004468 76004761 -86595169 - AluJo SINE Alu -14 288 4 2119 287 71 77 chrX 76004761 76004930 -86595000 + L1MCc LINE L1 1340 1508 -4915 1431 254 20 20 chrX 76005089 76005443 -86594487 - MLT1A1 LTR MaLR 0 365 12 926 180 4 10 chrX 76005459 76005735 -86594195 - MLT1A1 LTR MaLR -2 363 5 1145 298 54 16 chrX 76005739 76006165 -86593765 - MLT1A1-int LTR MaLR 0 1735 1294 10256 222 54 17 chrX 76006303 76008897 -86591033 + L1MA4A LINE L1 1599 4097 -2908 360 0 0 0 chrX 76008897 76008937 -86590993 + (CA)n Simple_repeat Simple_repeat 2 41 0 10256 222 54 17 chrX 76008937 76009107 -86590823 + L1MA4A LINE L1 4097 4259 -2746 1453 118 5 32 chrX 76009107 76009328 -86590602 + AluSg/x SINE Alu 85 299 -11 10256 222 54 17 chrX 76009328 76010594 -86589336 + L1MA4A LINE L1 4259 5477 -1528 2281 188 11 63 chrX 76010594 76011130 -86588800 + LTR22 LTR ERVK 2 509 0 10256 222 54 17 chrX 76011130 76012253 -86587677 + L1MA4A LINE L1 5477 6998 -7 927 325 12 16 chrX 76012254 76012755 -86587175 + L1MCc LINE L1 1877 2375 -4568 346 241 19 19 chrX 76012799 76012907 -86587023 - L1MC1 LINE L1 0 6333 6226 1847 173 33 9 chrX 76012910 76013245 -86586685 + MER61A LTR ERV1 1 343 0 3612 156 69 55 chrX 76013245 76013340 -86586590 + MER61A-int LTR ERV1 1 93 -5124 2152 118 7 0 chrX 76013340 76013637 -86586293 - AluSq SINE Alu -11 302 4 3612 156 69 55 chrX 76013637 76014376 -86585554 + MER61A-int LTR ERV1 93 821 -4396 2451 62 0 10 chrX 76014376 76014683 -86585247 + AluY SINE Alu 1 304 -7 3612 156 69 55 chrX 76014683 76015189 -86584741 + MER61A-int LTR ERV1 817 1979 -3234 1647 144 35 8 chrX 76015189 76015446 -86584484 + AluSx SINE Alu 30 293 -19 12071 105 36 19 chrX 76015447 76017249 -86582681 + MER61A-int LTR ERV1 3386 5217 0 2033 148 18 6 chrX 76017249 76017587 -86582343 + MER61A LTR ERV1 1 342 -1 2318 229 59 7 chrX 76017587 76018195 -86581735 - L1MC1 LINE L1 -106 6227 5588 5015 163 33 15 chrX 76018196 76018320 -86581610 + L1PA15 LINE L1 4680 4800 -1365 2118 83 0 0 chrX 76018320 76018607 -86581323 + L1PA8 LINE L1 5883 6171 -1 5015 163 33 15 chrX 76018607 76018823 -86581107 + L1PA15 LINE L1 4800 5011 -1154 2270 65 7 4 chrX 76018823 76019100 -86580830 + AluY SINE Alu 21 298 -13 5015 163 33 15 chrX 76019100 76020195 -86579735 + L1PA15 LINE L1 5011 6137 -28 819 228 0 5 chrX 76020214 76020415 -86579515 - L1MC1 LINE L1 -741 5592 5397 522 176 66 56 chrX 76020660 76020850 -86579080 - L1MA8 LINE L1 -2 6310 6117 798 228 53 11 chrX 76020884 76021228 -86578702 + L1M4 LINE L1 5060 5425 -751 3429 263 53 28 chrX 76021328 76023053 -86576877 - L1MC1 LINE L1 -751 5395 3661 1156 237 43 65 chrX 76023043 76023770 -86576160 - L1MC1 LINE L1 -2713 3433 2723 * 1182 218 24 48 chrX 76023789 76023959 -86575971 - AluJo SINE Alu -30 282 109 2195 126 52 14 chrX 76023959 76024307 -86575623 + THE1B LTR MaLR 4 364 0 10951 115 4 4 chrX 76024307 76024510 -86575420 + THE1B-int LTR MaLR 1 203 -1377 2135 113 13 0 chrX 76024510 76024810 -86575120 + AluSg SINE Alu 1 304 -6 10951 115 4 4 chrX 76024810 76026187 -86573743 + THE1B-int LTR MaLR 203 1580 0 1956 148 54 20 chrX 76026187 76026539 -86573391 + THE1B LTR MaLR 1 364 0 1182 218 24 48 chrX 76026539 76026655 -86573275 - AluJo SINE Alu -200 112 1 1003 298 76 4 chrX 76026666 76027152 -86572778 - L1MC1 LINE L1 -3425 2721 2201 2261 161 34 12 chrX 76027157 76027654 -86572276 - L1MA2 LINE L1 0 6304 5797 280 114 45 0 chrX 76027654 76027698 -86572232 + THE1C LTR MaLR 330 375 0 602 196 0 54 chrX 76027698 76027846 -86572084 + L1 LINE L1 4071 4210 -1936 * 9362 164 21 23 chrX 76027840 76029931 -86569999 + L1P4 LINE L1 1592 3693 -3891 1775 158 57 28 chrX 76029939 76030293 -86569637 + THE1C LTR MaLR 1 364 -11 12735 212 18 12 chrX 76030298 76033663 -86566267 + L1P4 LINE L1 3699 7080 -519 1107 208 9 4 chrX 76033659 76033889 -86566041 - L1MA2 LINE L1 -467 5654 5465 * 5466 253 28 37 chrX 76033890 76035335 -86564595 - ERVL-B1 LTR ERVL -4332 1432 2 315 196 0 0 chrX 76035335 76035387 -86564543 - Ricksha DNA DNA -2341 905 854 192 217 0 0 chrX 76035387 76035433 -86564497 + (CA)n Simple_repeat Simple_repeat 1 46 0 2035 241 48 4 chrX 76035434 76035894 -86564036 - MLT2B1 LTR ERVL -40 480 1 403 244 39 13 chrX 76035894 76036050 -86563880 + L1MB8 LINE L1 6019 6178 0 * 772 277 87 14 chrX 76036046 76036543 -86563387 + L1ME1 LINE L1 2152 2641 -3574 227 250 17 106 chrX 76036540 76036659 -86563271 + L1ME1 LINE L1 4850 4950 -1265 * 2146 105 0 0 chrX 76036659 76036974 -86562956 + AluSc SINE Alu 3 317 0 227 250 17 106 chrX 76036974 76037033 -86562897 + L1ME1 LINE L1 4950 5013 -1202 1486 203 18 2 chrX 76037145 76037551 -86562379 - L1M2 LINE L1 -723 5568 5158 1090 259 48 40 chrX 76037557 76038012 -86561918 + L1MA9 LINE L1 5816 6274 -38 27 0 0 0 chrX 76038018 76038045 -86561885 + AT_rich Low_complexity Low_complexity 1 27 0 456 188 8 43 chrX 76038088 76038205 -86561725 + L1ME1 LINE L1 5197 5309 -906 229 182 10 101 chrX 76038267 76038366 -86561564 + L1MC4 LINE L1 6614 6703 -1339 264 59 0 0 chrX 76038366 76038400 -86561530 + (TG)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chrX 76038399 76038423 -86561507 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 2003 167 26 0 chrX 76038425 76038773 -86561157 + THE1B LTR MaLR 5 361 -3 301 275 11 22 chrX 76038776 76038867 -86561063 + L1MC4 LINE L1 6614 6703 -1339 206 122 0 20 chrX 76038889 76038938 -86560992 + (TA)n Simple_repeat Simple_repeat 2 49 0 1487 213 30 115 chrX 76038964 76039168 -86560762 + L1ME1 LINE L1 5382 5602 -633 216 0 0 0 chrX 76039168 76039192 -86560738 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1487 213 30 115 chrX 76039192 76039315 -86560615 + L1ME1 LINE L1 5602 5734 -501 2054 130 23 0 chrX 76039315 76039615 -86560315 - AluSx SINE Alu -5 307 1 1487 213 30 115 chrX 76039615 76039953 -86559977 + L1ME1 LINE L1 5734 5991 -244 442 265 31 94 chrX 76039975 76040199 -86559731 + L1ME1 LINE L1 5974 6182 -65 1981 144 3 0 chrX 76040199 76040491 -86559439 - AluSx SINE Alu -19 293 1 442 265 31 94 chrX 76040491 76040551 -86559379 + L1ME1 LINE L1 6182 6244 -3 16638 215 18 12 chrX 76040658 76041931 -86557999 + L1PA14 LINE L1 1 1265 -5547 687 25 0 0 chrX 76041931 76042012 -86557918 + (TTC)n Simple_repeat Simple_repeat 3 83 0 16638 215 18 12 chrX 76042012 76047497 -86552433 + L1PA14 LINE L1 1265 6797 -15 801 179 0 0 chrX 76047667 76047839 -86552091 - L1P LINE L1 -1379 4767 4596 * 813 238 120 41 chrX 76047835 76048358 -86551572 + L1ME LINE L1 5059 5608 -558 1993 180 35 43 chrX 76048364 76048921 -86551009 - MLT2A2 LTR ERVL -7 547 1 250 208 0 21 chrX 76048924 76048972 -86550958 + L1M2 LINE L1 5613 5659 -496 281 303 160 0 chrX 76049200 76049319 -86550611 + MIR SINE MIR 56 193 -69 265 267 48 38 chrX 76049329 76049434 -86550496 - MIR SINE MIR -3 259 154 245 307 210 17 chrX 76049807 76049983 -86549947 - MIR SINE MIR -6 256 47 4996 101 11 1 chrX 76050511 76051244 -86548686 - L1PA13 LINE L1 -19 6144 5405 611 148 17 9 chrX 76051244 76051359 -86548571 - L1PA13 LINE L1 -1235 4911 4796 270 273 0 0 chrX 76051358 76051446 -86548484 + L1P LINE L1 4346 4433 -1713 * 325 342 129 45 chrX 76051790 76052231 -86547699 + L2 LINE L2 1796 2273 -1041 1866 149 129 6 chrX 76052645 76052995 -86546935 - MSTA LTR MaLR -35 393 1 1699 194 12 9 chrX 76052995 76053341 -86546589 + L1P LINE L1 4434 4780 -1366 432 0 0 0 chrX 76053859 76053907 -86546023 + (TA)n Simple_repeat Simple_repeat 2 49 0 678 135 0 10 chrX 76054078 76054205 -86545725 - AluSg/x SINE Alu 0 305 180 304 181 43 64 chrX 76054228 76054322 -86545608 - L1MC4 LINE L1 -1337 6705 6614 501 60 0 67 chrX 76054328 76054462 -86545468 + (TA)n Simple_repeat Simple_repeat 2 126 0 1905 123 3 7 chrX 76054863 76055192 -86544738 + AluSx SINE Alu 1 328 0 27 29 0 0 chrX 76055489 76055523 -86544407 + AT_rich Low_complexity Low_complexity 1 34 0 21 71 0 0 chrX 76056149 76056191 -86543739 + AT_rich Low_complexity Low_complexity 1 42 0 562 269 87 67 chrX 76056718 76057119 -86542811 - L1ME1 LINE L1 -5 6161 5753 21 71 0 0 chrX 76057123 76057165 -86542765 + AT_rich Low_complexity Low_complexity 1 42 0 371 198 38 0 chrX 76057175 76057281 -86542649 - L1MA7 LINE L1 0 6291 6182 1610 112 33 0 chrX 76057317 76057558 -86542372 + PABL_B LTR ERV1 419 667 0 253 255 0 0 chrX 76057558 76057600 -86542330 - AluSp SINE Alu -133 170 129 779 177 0 0 chrX 76057603 76057727 -86542203 - AluJo/FLAM SINE Alu -176 126 3 634 203 15 3 chrX 76057730 76057896 -86542034 - L1M1 LINE L1 -692 5599 5443 2797 157 68 18 chrX 76057919 76058466 -86541464 - MER4B LTR ERV1 -36 574 1 2972 137 71 33 chrX 76058466 76059015 -86540915 - MER4B-int LTR ERV1 0 6758 6189 2261 132 11 27 chrX 76059015 76059385 -86540545 - THE1B LTR MaLR 0 364 1 8098 131 30 1 chrX 76059385 76060598 -86539332 - THE1B-int LTR MaLR 0 1580 333 731 150 0 0 chrX 76060598 76060711 -86539219 + AluSq SINE Alu 61 173 -140 1130 263 149 31 chrX 76060858 76061375 -86538555 + MER50 LTR ERV1 8 585 -149 4177 185 86 86 chrX 76061378 76062396 -86537534 - LTR28 LTR ERV1 0 1020 3 6555 156 28 12 chrX 76062397 76064122 -86535808 - LTR28-int LTR ERV1 0 6930 2482 270 176 0 0 chrX 76064122 76064173 -86535757 + (TA)n Simple_repeat Simple_repeat 2 52 0 421 156 21 52 chrX 76064184 76064280 -86535650 - LTR28-int LTR ERV1 -2735 2482 2390 * 3830 178 19 30 chrX 76064270 76065105 -86534825 - LTR28-int LTR ERV1 -3421 2899 2057 1774 183 0 13 chrX 76065105 76065411 -86534519 + AluSx SINE Alu 1 302 -10 3830 178 19 30 chrX 76065411 76065855 -86534075 - LTR28-int LTR ERV1 -4263 2057 604 3611 202 56 28 chrX 76065870 76066698 -86533232 - LTR28-int LTR ERV1 -300 4917 4067 2548 211 101 27 chrX 76066702 76067333 -86532597 - LTR28-int LTR ERV1 -6246 845 168 4953 182 94 2 chrX 76067487 76068421 -86531509 - LTR28 LTR ERV1 0 1020 1 483 157 198 8 chrX 76068421 76068542 -86531388 + MER50 LTR ERV1 591 734 0 5004 201 22 17 chrX 76068545 76069947 -86529983 + MER50-int LTR ERV1 5 1539 -5666 180 305 0 86 chrX 76069947 76070052 -86529878 - L2 LINE L2 -1727 1587 1492 451 201 18 73 chrX 76070071 76070234 -86529696 + MER57-int LTR ERV1 1668 4781 -436 * 511 279 9 0 chrX 76070228 76070339 -86529591 + MER57-int LTR ERV1 2789 2900 -4305 * 690 141 31 16 chrX 76070336 76070464 -86529466 + MER57-int LTR ERV1 3586 3715 -1165 * 1097 186 29 34 chrX 76070447 76070856 -86529074 + MER57-int LTR ERV1 890 4068 -812 * 5026 160 35 5 chrX 76070847 76071853 -86528077 + MER57-int LTR ERV1 1276 3219 -3253 1736 233 90 21 chrX 76071921 76072389 -86527541 + MER50 LTR ERV1 235 734 0 640 170 0 0 chrX 76072433 76072545 -86527385 - MER4B-int LTR ERV1 -6047 711 600 186 258 97 65 chrX 76072545 76072638 -86527292 + L3 LINE CR1 276 371 -1206 1579 192 11 0 chrX 76072638 76072909 -86527021 - MER4B-int LTR ERV1 -6254 504 231 1710 148 11 14 chrX 76072946 76073229 -86526701 - MER4B-int LTR ERV1 -6476 282 1 3035 143 59 11 chrX 76073231 76073812 -86526118 - MER4B LTR ERV1 -2 777 2 889 230 28 0 chrX 76073814 76074094 -86525836 - L1M2 LINE L1 -743 5403 5163 1246 209 86 7 chrX 76074134 76074225 -86525705 - L1PB4 LINE L1 -13 6143 6053 7690 237 38 24 chrX 76074225 76077488 -86522442 - L1MA4A LINE L1 -254 7468 4089 16863 211 29 13 chrX 76077511 76085086 -86514844 - L1MA1 LINE L1 -4 7717 17 424 185 110 27 chrX 76085185 76085331 -86514599 - Charlie5 DNA MER1_type -103 2509 2352 25 0 0 0 chrX 76085332 76085357 -86514573 + AT_rich Low_complexity Low_complexity 1 25 0 7606 27 0 4 chrX 76085377 76086356 -86513574 - L1PA4 LINE L1 0 6155 5177 2850 266 53 22 chrX 76086363 76087942 -86511988 - L1PBb LINE L1 -3529 4036 2312 311 270 0 35 chrX 76087958 76088073 -86511857 + L1PA15-16 LINE L1 2131 2241 -4608 379 196 293 0 chrX 76088129 76088262 -86511668 - L1PBb LINE L1 -5342 2224 2053 * 407 244 0 0 chrX 76088249 76088335 -86511595 - L1PBb LINE L1 -5286 2279 2194 * 629 269 60 6 chrX 76088326 76088493 -86511437 - L1PBb LINE L1 -6825 740 565 459 368 124 23 chrX 76088799 76089514 -86510416 - L1M2b LINE L1 -6320 889 1 239 0 32 0 chrX 76089592 76089623 -86510307 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1716 174 4 0 chrX 76089625 76089906 -86510024 - AluSx SINE Alu -30 282 1 331 336 70 0 chrX 76089918 76090061 -86509869 - L1M4 LINE L1 -1121 5025 4873 37 39 0 0 chrX 76090505 76090556 -86509374 + AT_rich Low_complexity Low_complexity 1 51 0 400 252 35 0 chrX 76090706 76090821 -86509109 - L1MA7 LINE L1 -9 6282 6164 6276 26 0 0 chrX 76090920 76091650 -86508280 - L1PA4 LINE L1 -3 6152 5423 1200 44 0 50 chrX 76091837 76092019 -86507911 - L1PA3 LINE L1 -323 5832 5660 6496 166 32 9 chrX 76092115 76094532 -86505398 - L1MA1 LINE L1 0 7721 5255 * 18127 194 34 6 chrX 76094530 76098330 -86501600 - L1MA1 LINE L1 -3650 3915 12 228 138 46 0 chrX 76098857 76098922 -86501008 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 684 181 0 26 chrX 76099084 76099239 -86500691 - L1MA9 LINE L1 0 6312 6162 2253 235 22 29 chrX 76099283 76099912 -86500018 - L1MA7 LINE L1 0 6291 5667 357 155 0 0 chrX 76100500 76100558 -86499372 - Alu SINE Alu -7 295 238 2314 56 0 13 chrX 76100860 76101162 -86498768 + L1PA5 LINE L1 5843 6140 -14 198 0 0 0 chrX 76101166 76101188 -86498742 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1228 137 0 47 chrX 76101420 76101632 -86498298 + L1PA15 LINE L1 5956 6157 -8 21 71 0 0 chrX 76102577 76102619 -86497311 + AT_rich Low_complexity Low_complexity 1 42 0 203 161 0 0 chrX 76102923 76102954 -86496976 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 231 36 0 0 chrX 76102969 76102997 -86496933 + (CA)n Simple_repeat Simple_repeat 2 29 0 266 169 0 28 chrX 76102998 76103069 -86496861 + GA-rich Low_complexity Low_complexity 4 72 0 23 0 0 0 chrX 76103207 76103230 -86496700 + AT_rich Low_complexity Low_complexity 1 23 0 281 379 30 30 chrX 76104571 76104740 -86495190 + MIR3 SINE MIR 37 205 -3 545 261 8 0 chrX 76105012 76105146 -86494784 - Tigger6 DNA MER2_type -1 1596 1462 2104 261 53 38 chrX 76105733 76106735 -86493195 + L1M4c LINE L1 829 1845 -4539 1814 227 31 24 chrX 76106801 76107053 -86492877 - MSTB LTR MaLR -2 424 166 1853 27 0 0 chrX 76107053 76107275 -86492655 - L1PA2 LINE L1 -3 6152 5931 1814 227 31 24 chrX 76107275 76107441 -86492489 - MSTB LTR MaLR -260 166 3 2010 241 24 9 chrX 76107532 76108083 -86491847 + L1P LINE L1 2459 3017 -3129 992 203 60 26 chrX 76108096 76108362 -86491568 + L1MB2 LINE L1 5887 6161 -10 1111 249 52 41 chrX 76108393 76109198 -86490732 + L1M4c LINE L1 2101 2915 -3467 * 3924 213 48 30 chrX 76109165 76110642 -86489288 + L1M1 LINE L1 1681 3185 -3663 964 251 30 55 chrX 76110643 76110908 -86489022 + L1M1 LINE L1 3365 3612 -3236 1379 237 3 0 chrX 76110908 76111199 -86488731 + AluJb SINE Alu 5 296 -16 964 251 30 55 chrX 76111199 76111438 -86488492 + L1M1 LINE L1 3612 3856 -2992 5212 244 28 15 chrX 76111449 76113205 -86486725 + L1MA9 LINE L1 12 2471 -5094 1960 162 123 5 chrX 76113205 76113588 -86486342 - MSTA LTR MaLR 0 428 1 7295 175 61 42 chrX 76113588 76115136 -86484794 - MSTA-int LTR MaLR 0 1580 3 1620 174 111 61 chrX 76115139 76115490 -86484440 - MSTA LTR MaLR -1 427 51 2003 142 0 0 chrX 76115490 76115799 -86484131 + AluSg SINE Alu 1 309 0 1620 174 111 61 chrX 76115799 76115853 -86484077 - MSTA LTR MaLR -377 51 1 5890 176 24 4 chrX 76115865 76117263 -86482667 + L1MA1 LINE L1 4873 6298 -4 4503 191 18 15 chrX 76117291 76117314 -86482616 + L1M1 LINE L1 5004 5025 -1981 2117 119 7 0 chrX 76117314 76117609 -86482321 + AluSc SINE Alu 1 297 -12 4503 191 18 15 chrX 76117609 76117972 -86481958 + L1M1 LINE L1 5025 5385 -1621 207 0 0 0 chrX 76117972 76117995 -86481935 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4503 191 18 15 chrX 76117995 76119046 -86480884 + L1M1 LINE L1 5385 6450 -556 21 57 0 0 chrX 76119046 76119081 -86480849 + AT_rich Low_complexity Low_complexity 1 35 0 6716 227 31 28 chrX 76119116 76120286 -86479644 + L1MA9 LINE L1 4633 5813 -1752 2359 82 0 0 chrX 76120286 76120580 -86479350 + AluY SINE Alu 1 294 -17 6716 227 31 28 chrX 76120580 76121349 -86478581 + L1MA9 LINE L1 5813 6578 -987 1769 194 25 5 chrX 76121353 76121761 -86478169 + L1PB4 LINE L1 4316 4731 -1415 400 94 0 0 chrX 76121764 76121828 -86478102 + L1PA16 LINE L1 6103 6166 0 446 194 177 0 chrX 76122012 76122136 -86477794 + L1PB4 LINE L1 4737 4882 -1264 4482 307 57 29 chrX 76123063 76124996 -86474934 + HERVFH19I LTR ERV1 653 2777 -4942 1809 133 0 0 chrX 76124996 76125252 -86474678 - AluSx SINE Alu -21 291 36 4482 307 57 29 chrX 76125252 76126405 -86473525 + HERVFH19I LTR ERV1 2777 3896 -3823 2683 240 92 31 chrX 76126442 76127102 -86472828 + MER21B LTR ERV1 5 724 -139 345 100 0 0 chrX 76127102 76127152 -86472778 + (AATTG)n Simple_repeat Simple_repeat 2 51 0 2683 240 92 31 chrX 76127152 76127298 -86472632 + MER21B LTR ERV1 724 860 -3 461 197 120 43 chrX 76127321 76127438 -86472492 - MSTC LTR MaLR -302 126 1 2285 196 25 15 chrX 76127438 76127991 -86471939 + L1MA9 LINE L1 6654 7212 -519 5988 180 35 26 chrX 76127997 76129202 -86470728 + HSMAR2 DNA Mariner 4 1219 -83 663 219 13 13 chrX 76129192 76129343 -86470587 - HSMAR2 DNA Mariner -206 1096 946 * 230 221 116 0 chrX 76129347 76129433 -86470497 + HSMAR2 DNA Mariner 1205 1300 -2 1634 244 56 4 chrX 76129456 76129960 -86469970 + L1MA9 LINE L1 7202 7731 0 * 6735 224 55 54 chrX 76129958 76131095 -86468835 + L1MB1 LINE L1 2761 3895 -2273 1838 141 4 0 chrX 76131095 76131364 -86468566 + AluSx SINE Alu 31 300 -12 351 0 0 0 chrX 76131364 76131403 -86468527 + (TA)n Simple_repeat Simple_repeat 1 39 0 6735 224 55 54 chrX 76131403 76132580 -86467350 + L1MB1 LINE L1 3895 5068 -1100 2153 99 7 0 chrX 76132580 76132874 -86467056 - AluSc SINE Alu -13 296 1 6735 224 55 54 chrX 76132874 76133133 -86466797 + L1MB1 LINE L1 5068 5325 -843 2098 109 10 7 chrX 76133133 76133435 -86466495 + AluSg SINE Alu 1 303 -7 6735 224 55 54 chrX 76133435 76134236 -86465694 + L1MB1 LINE L1 5325 6168 0 309 225 35 35 chrX 76134247 76134389 -86465541 + L1 LINE L1 4233 4374 -1772 * 3986 197 41 11 chrX 76134381 76135529 -86464401 + L1PB4 LINE L1 4978 6154 -2 1714 285 31 10 chrX 76135528 76136229 -86463701 + L1 LINE L1 4353 5068 -1078 * 2365 200 17 4 chrX 76136255 76136774 -86463156 - Ricksha DNA DNA -17 3234 2709 5051 181 14 12 chrX 76136774 76138313 -86461617 - L1PA16 LINE L1 -37 6129 4595 378 407 12 8 chrX 76138310 76138563 -86461367 - L1PA13 LINE L1 -6411 376 123 * 1018 205 15 0 chrX 76138567 76138772 -86461158 - Ricksha DNA DNA -1218 2028 1821 * 1260 221 55 0 chrX 76138770 76139041 -86460889 - Ricksha DNA DNA -1758 288 3 3947 189 56 12 chrX 76139067 76139945 -86459985 + L1MB3 LINE L1 5265 6180 -3 2621 234 107 20 chrX 76140009 76140306 -86459624 - Tigger6a DNA MER2_type -628 969 699 2952 3 0 0 chrX 76140306 76140623 -86459307 + AluYb8 SINE Alu 1 317 -1 2621 234 107 20 chrX 76140623 76141217 -86458713 - Tigger6a DNA MER2_type -898 699 1 1693 181 144 5 chrX 76141218 76141594 -86458336 + MSTA LTR MaLR 1 428 0 8598 194 17 3 chrX 76141613 76143237 -86456693 + MSTA-int LTR MaLR 5 1651 0 2035 155 121 5 chrX 76143239 76143620 -86456310 + MSTA LTR MaLR 3 427 -1 225 119 0 0 chrX 76144288 76144330 -86455600 + (CA)n Simple_repeat Simple_repeat 2 43 0 259 289 7 74 chrX 76144343 76144478 -86455452 - L2 LINE L2 -4 3309 3184 487 165 0 0 chrX 76144525 76144616 -86455314 + L1MA5 LINE L1 6210 6300 0 346 298 53 15 chrX 76144749 76144880 -86455050 - MIR SINE MIR -8 254 119 476 223 99 78 chrX 76144940 76145223 -86454707 + L1MB7 LINE L1 5883 6171 -13 5149 267 20 14 chrX 76145449 76146776 -86453154 + L1PA14 LINE L1 1 1250 -5537 4682 209 33 34 chrX 76146792 76147215 -86452715 + L1PA14 LINE L1 1575 1997 -4800 1773 105 11 22 chrX 76147215 76147482 -86452448 + AluSc SINE Alu 43 306 -3 4682 209 33 34 chrX 76147482 76148374 -86451556 + L1PA14 LINE L1 1997 2889 -3908 1834 139 104 24 chrX 76148374 76148711 -86451219 - THE1B LTR MaLR 0 364 1 4682 209 33 34 chrX 76148711 76148971 -86450959 + L1PA14 LINE L1 2889 3148 -3649 2053 135 7 0 chrX 76148971 76149268 -86450662 + AluSq SINE Alu 3 301 -12 1880 148 23 16 chrX 76149270 76149580 -86450350 + AluSx SINE Alu 1 312 0 4682 209 33 34 chrX 76149580 76149912 -86450018 + L1PA14 LINE L1 3149 3483 -3314 7278 210 20 15 chrX 76149921 76152327 -86447603 + L1PA14 LINE L1 4382 6798 -14 451 266 0 22 chrX 76152332 76152471 -86447459 + L1MDa LINE L1 1845 1980 -4560 27 29 0 0 chrX 76152482 76152516 -86447414 + AT_rich Low_complexity Low_complexity 1 34 0 33 66 0 0 chrX 76152898 76152959 -86446971 + AT_rich Low_complexity Low_complexity 1 61 0 1071 370 46 12 chrX 76153033 76153617 -86446313 - L2 LINE L2 -469 2845 2242 320 235 12 0 chrX 76153631 76153716 -86446214 - MER115 DNA AcHobo -26 667 582 447 365 105 12 chrX 76153846 76154254 -86445676 - L2 LINE L2 -1159 2155 1710 3095 213 28 12 chrX 76154272 76154434 -86445496 - L1MD1 LINE L1 -2 6240 6082 1601 172 55 12 chrX 76154434 76154759 -86445171 + MER44D DNA MER2_type 1 609 0 3095 213 28 12 chrX 76154759 76155342 -86444588 - L1MD1 LINE L1 -160 6082 5483 1706 196 52 26 chrX 76155362 76155783 -86444147 - L1MA9 LINE L1 -36 6276 5841 216 0 0 0 chrX 76155783 76155807 -86444123 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1706 196 52 26 chrX 76155807 76155844 -86444086 - L1MA9 LINE L1 -471 5841 5806 3943 206 49 14 chrX 76155869 76156853 -86443077 - L1MA4 LINE L1 -5 6295 5284 21 0 0 0 chrX 76157165 76157186 -86442744 + AT_rich Low_complexity Low_complexity 1 21 0 5460 187 18 18 chrX 76157447 76159205 -86440725 - L1PA16 LINE L1 -9 6157 4411 10939 230 36 21 chrX 76159222 76161454 -86438476 - L1M2 LINE L1 -859 5989 3675 2461 74 0 0 chrX 76161454 76161751 -86438179 + AluY SINE Alu 1 297 -14 10939 230 36 21 chrX 76161751 76163679 -86436251 - L1M2 LINE L1 -3173 3675 1777 269 207 33 50 chrX 76163670 76163699 -86436231 - L1MA4A LINE L1 0 6303 6275 * 1570 199 39 28 chrX 76163699 76164048 -86435882 - L1PB4 LINE L1 -9 6147 5792 186 43 0 0 chrX 76164048 76164071 -86435859 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1570 199 39 28 chrX 76164071 76164082 -86435848 - L1PB4 LINE L1 -364 5792 5783 630 192 0 0 chrX 76164089 76164193 -86435737 + L1 LINE L1 225 328 -6521 635 233 21 16 chrX 76164205 76164398 -86435532 + L1 LINE L1 5659 5852 -996 2954 229 9 6 chrX 76164525 76165780 -86434150 - L1PB4 LINE L1 -364 5792 4532 276 167 0 17 chrX 76165780 76165840 -86434090 - L1M2 LINE L1 -5042 1807 1749 1037 147 12 6 chrX 76165864 76166027 -86433903 - AluSq SINE Alu -15 298 135 359 164 45 109 chrX 76166048 76166071 -86433859 + L1PA15 LINE L1 5776 5799 -366 180 0 0 0 chrX 76166071 76166091 -86433839 + (CCA)n Simple_repeat Simple_repeat 1 20 0 359 164 45 109 chrX 76166091 76166177 -86433753 + L1PA15 LINE L1 5799 5878 -287 * 5909 90 22 8 chrX 76166176 76167741 -86432189 - L1PA8 LINE L1 -193 5979 4388 548 222 0 0 chrX 76167746 76167845 -86432085 + MER30 DNA MER1_type 132 230 0 5553 274 50 11 chrX 76167845 76169234 -86430696 - L1M2 LINE L1 -5400 1449 7 2649 195 29 14 chrX 76169243 76170135 -86429795 - L1M2 LINE L1 -527 5785 4882 682 220 12 1 chrX 76170153 76170339 -86429591 - L1MC/D LINE L1 -858 5447 5273 23 33 0 0 chrX 76171421 76171451 -86428479 + AT_rich Low_complexity Low_complexity 1 30 0 1951 158 7 0 chrX 76171453 76171750 -86428180 + AluSx SINE Alu 3 301 -11 36 53 0 0 chrX 76171962 76172019 -86427911 + AT_rich Low_complexity Low_complexity 1 57 0 5958 223 47 15 chrX 76172125 76177580 -86422350 - L1PA13 LINE L1 -4 6810 991 1347 169 126 12 chrX 76177707 76177961 -86421969 - AluSg1 SINE Alu -26 283 1 25683 35 4 8 chrX 76178866 76182057 -86417873 - L1PA3 LINE L1 -791 5355 2175 6433 36 19 0 chrX 76182057 76182831 -86417099 + L1PA3 LINE L1 5359 6155 0 4743 210 14 2 chrX 76182847 76183926 -86416004 - L1 LINE L1 -1112 5034 3943 184 0 30 61 chrX 76184431 76184464 -86415466 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 5863 88 13 2 chrX 76184464 76185972 -86413958 - L1PA8A LINE L1 -16 6115 4574 10448 140 5 5 chrX 76185973 76187751 -86412179 + L1P LINE L1 2721 4499 -1647 189 0 0 0 chrX 76187753 76187774 -86412156 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1761 154 4 0 chrX 76187784 76188050 -86411880 - AluSx SINE Alu -37 275 9 22 70 0 0 chrX 76190377 76190420 -86409510 + AT_rich Low_complexity Low_complexity 1 43 0 2296 94 0 3 chrX 76192413 76192721 -86407209 - AluSq SINE Alu -6 307 1 269 101 25 25 chrX 76193295 76193374 -86406556 + (TA)n Simple_repeat Simple_repeat 1 79 0 15587 224 24 37 chrX 76193374 76201073 -86398857 - L1PA13 LINE L1 -4 7597 11 10743 239 51 18 chrX 76201086 76205286 -86394644 - L1M2 LINE L1 -713 6997 2647 3948 204 24 20 chrX 76205286 76206653 -86393277 - L1P4 LINE L1 -573 5593 4227 2772 282 130 19 chrX 76206659 76206790 -86393140 - L1M4b LINE L1 -5793 1066 951 198 0 0 0 chrX 76206790 76206812 -86393118 + (TG)n Simple_repeat Simple_repeat 1 22 0 2772 282 130 19 chrX 76206812 76207637 -86392293 - L1M4b LINE L1 -5908 951 4 246 62 0 0 chrX 76207840 76207872 -86392058 + (TA)n Simple_repeat Simple_repeat 2 33 0 1400 222 52 14 chrX 76208295 76208642 -86391288 - MLT1A1 LTR MaLR 0 365 6 1129 231 14 70 chrX 76209316 76209732 -86390198 - L1 LINE L1 -803 6405 6013 1255 250 44 32 chrX 76209750 76210398 -86389532 - L1PBb LINE L1 -4864 2345 1695 947 305 25 0 chrX 76210388 76210673 -86389257 - L1PBb LINE L1 -5290 1918 1627 * 2094 145 36 20 chrX 76211021 76211379 -86388551 + THE1B LTR MaLR 1 364 0 4801 86 1 6 chrX 76211379 76212029 -86387901 + THE1B-int LTR MaLR 1 647 -933 3936 122 14 10 chrX 76211998 76212588 -86387342 + THE1B-int LTR MaLR 989 1580 0 * 2209 147 28 17 chrX 76212588 76212948 -86386982 + THE1B LTR MaLR 1 364 0 350 397 19 26 chrX 76212949 76213216 -86386714 - L1PBb LINE L1 -5887 1322 1058 359 384 104 9 chrX 76213220 76213681 -86386249 - L1PBb LINE L1 -6457 752 248 * 13332 217 43 40 chrX 76213674 76213808 -86386122 - L1PA12 LINE L1 -2341 5243 5111 384 77 0 0 chrX 76213808 76213860 -86386070 + (TG)n Simple_repeat Simple_repeat 2 53 0 13332 217 43 40 chrX 76213860 76217136 -86382794 - L1PA12 LINE L1 -2473 5111 1847 3145 98 16 5 chrX 76217136 76217584 -86382346 - MLT2A2 LTR ERVL 0 453 1 13332 217 43 40 chrX 76217584 76217709 -86382221 - L1PA12 LINE L1 -5737 1847 1724 2045 172 127 48 chrX 76217709 76218251 -86381679 - LTR4 LTR ERV1 -2 586 2 13332 217 43 40 chrX 76218251 76219649 -86380281 - L1PA12 LINE L1 -5860 1724 1 253 232 42 0 chrX 76219764 76219859 -86380071 + (TTATA)n Simple_repeat Simple_repeat 1 99 0 617 298 103 58 chrX 76219862 76219925 -86380005 - HAL1 LINE L1 -599 1908 1849 2269 129 8 11 chrX 76219925 76220281 -86379649 + THE1A LTR MaLR 1 355 0 10769 126 3 0 chrX 76220281 76221856 -86378074 + THE1A-int LTR MaLR 1 1580 0 2189 123 20 9 chrX 76221856 76222206 -86377724 + THE1A LTR MaLR 1 354 -1 617 298 103 58 chrX 76222206 76222724 -86377206 - HAL1 LINE L1 -657 1850 1299 222 118 0 0 chrX 76222749 76222783 -86377147 + (GA)n Simple_repeat Simple_repeat 1 34 0 246 193 84 50 chrX 76222878 76222997 -86376933 - HAL1 LINE L1 -1322 1185 1063 6459 233 33 42 chrX 76223032 76224811 -86375119 + L1PB4 LINE L1 3055 4815 -1331 1781 203 79 20 chrX 76224811 76225215 -86374715 - MSTA LTR MaLR 0 428 1 6459 233 33 42 chrX 76225215 76225483 -86374447 + L1PB4 LINE L1 4815 5084 -1062 1885 182 25 0 chrX 76225478 76225611 -86374319 + L1PB4 LINE L1 5520 5648 -508 * 1885 212 5 9 chrX 76225611 76226031 -86373899 + L1PB4 LINE L1 5733 6150 -6 1885 182 25 0 chrX 76226031 76226044 -86373886 + L1PB4 LINE L1 5648 6150 -6 202 226 35 35 chrX 76226357 76226472 -86373458 + (TTATA)n Simple_repeat Simple_repeat 5 119 0 306 276 27 65 chrX 76226623 76226808 -86373122 - L1M4 LINE L1 -1438 4708 4531 23 0 0 0 chrX 76226939 76226962 -86372968 + AT_rich Low_complexity Low_complexity 1 23 0 1289 285 52 12 chrX 76226963 76227479 -86372451 - L1MD3 LINE L1 -12 7983 7447 1717 141 182 22 chrX 76227479 76227848 -86372082 + MSTA LTR MaLR 1 428 0 2308 286 23 72 chrX 76227945 76229167 -86370763 - L1MC3 LINE L1 -684 7101 5940 649 148 7 129 chrX 76229170 76229325 -86370605 + Tigger1 DNA MER2_type 1 136 -2282 1131 154 35 5 chrX 76229333 76229534 -86370396 + Tigger1 DNA MER2_type 2211 2417 -1 862 256 37 25 chrX 76229534 76229752 -86370178 - L1MC3 LINE L1 -2091 5951 5726 2217 116 21 54 chrX 76229752 76230140 -86369790 - THE1C LTR MaLR 0 375 1 862 256 37 25 chrX 76230140 76230245 -86369685 - L1MC3 LINE L1 -2316 5726 5624 1252 216 36 83 chrX 76230262 76230646 -86369284 + MLT1A2 LTR MaLR 8 373 -1 1862 233 30 45 chrX 76230647 76231532 -86368398 - L1MC3 LINE L1 -743 5403 4744 297 75 0 0 chrX 76231573 76231613 -86368317 + (CA)n Simple_repeat Simple_repeat 2 41 0 3512 237 56 21 chrX 76231622 76232483 -86367447 + MER54A LTR ERVL 9 899 -2 2559 284 139 30 chrX 76232484 76234179 -86365751 - L1M4 LINE L1 -1747 4399 2521 * 8706 225 39 17 chrX 76234177 76239552 -86360378 - L1PA15 LINE L1 -6 6810 1246 225 325 59 16 chrX 76239554 76239877 -86360053 - L1M4 LINE L1 -3610 2536 2200 1769 244 13 5 chrX 76239883 76240330 -86359600 - L1 LINE L1 -1999 4147 3697 387 0 0 0 chrX 76240331 76240374 -86359556 + (TG)n Simple_repeat Simple_repeat 2 44 0 2666 290 57 90 chrX 76240457 76242280 -86357650 + L1M3d LINE L1 361 1851 -4802 2644 178 12 29 chrX 76242280 76242641 -86357289 - MER84 LTR ERV1 0 507 156 2124 114 3 3 chrX 76242641 76242938 -86356992 + AluSx SINE Alu 1 297 -15 2644 178 12 29 chrX 76242938 76243088 -86356842 - MER84 LTR ERV1 -351 156 5 6481 138 11 15 chrX 76243094 76244134 -86355796 - MER84-int LTR ERV1 -2 4952 3918 9619 137 10 7 chrX 76244659 76245186 -86354744 - MER84-int LTR ERV1 -2544 2410 1886 4847 38 0 0 chrX 76245186 76245769 -86354161 + L1PA4 LINE L1 5573 6155 0 9619 137 10 7 chrX 76245769 76246734 -86353196 - MER84-int LTR ERV1 -3068 1886 914 4849 160 1 3 chrX 76246731 76247492 -86352438 - MER84-int LTR ERV1 -4194 760 1 * 2956 171 8 0 chrX 76247492 76247995 -86351935 - MER84 LTR ERV1 0 507 1 1457 286 68 23 chrX 76248001 76248696 -86351234 + L1M4c LINE L1 1100 1825 -4559 32 43 0 0 chrX 76248798 76248844 -86351086 + AT_rich Low_complexity Low_complexity 1 46 0 251 282 47 34 chrX 76248857 76249006 -86350924 + L1M4c LINE L1 2079 2229 -4155 273 216 23 0 chrX 76249118 76249201 -86350729 + L1M4c LINE L1 2439 2496 -3888 979 261 30 58 chrX 76249229 76249558 -86350372 - MLT1A1 LTR MaLR -9 356 37 640 188 0 8 chrX 76249579 76249696 -86350234 - MLT1A1-int LTR MaLR 0 1735 1620 5971 137 6 3 chrX 76249696 76251319 -86348611 - L1PA10 LINE L1 -21 6147 4521 577 272 103 65 chrX 76251317 76251607 -86348323 - MLT1A1-int LTR MaLR -527 1208 908 * 864 247 4 69 chrX 76251630 76251877 -86348053 - MLT1A1 LTR MaLR -134 231 1 4842 260 80 14 chrX 76251880 76253845 -86346085 + L1M4c LINE L1 2522 4617 -1765 730 244 154 59 chrX 76253845 76254169 -86345761 + MLT1A1 LTR MaLR 1 355 -10 4168 276 105 54 chrX 76254177 76255011 -86344919 + MLT1A1-int LTR MaLR 3 793 -942 2247 166 6 0 chrX 76255011 76255373 -86344557 - THE1B LTR MaLR 0 364 1 9614 149 29 4 chrX 76255373 76256914 -86343016 - THE1B-int LTR MaLR 0 1580 1 2134 164 23 0 chrX 76256916 76257270 -86342660 - THE1B LTR MaLR -2 362 1 4168 276 105 54 chrX 76257270 76258080 -86341850 + MLT1A1-int LTR MaLR 793 1735 0 1455 178 32 40 chrX 76258086 76258390 -86341540 + MER4A-int LTR ERV1 210 553 -6045 228 67 0 0 chrX 76258390 76258420 -86341510 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1455 178 32 40 chrX 76258420 76258559 -86341371 + MER4A-int LTR ERV1 553 692 -5906 275 316 34 51 chrX 76258561 76258678 -86341252 + MER4A-int LTR ERV1 374 488 -6270 1515 136 121 12 chrX 76258798 76259055 -86340875 - AluY SINE Alu -23 288 4 14308 141 83 53 chrX 76259074 76263319 -86336611 + MER4A-int LTR ERV1 782 6598 0 547 155 21 10 chrX 76263321 76263418 -86336512 + MER4A LTR ERV1 1 98 -566 793 167 40 11 chrX 76263418 76263694 -86336236 + MER4B LTR ERV1 261 610 0 3740 236 21 30 chrX 76263694 76265053 -86334877 + L1MA9 LINE L1 4681 6051 -497 375 41 0 0 chrX 76265053 76265102 -86334828 + (CA)n Simple_repeat Simple_repeat 2 50 0 261 0 0 0 chrX 76265101 76265130 -86334800 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 3740 236 21 30 chrX 76265102 76265612 -86334318 + L1MA9 LINE L1 6051 6510 -38 312 180 22 11 chrX 76265612 76265701 -86334229 + GA-rich Low_complexity Low_complexity 3 92 0 2917 261 37 15 chrX 76265701 76265834 -86334096 - L1M4c LINE L1 -2559 3823 3694 2185 114 7 0 chrX 76265834 76266141 -86333789 - AluSx SINE Alu -3 309 1 2917 261 37 15 chrX 76266141 76267046 -86332884 - L1M4c LINE L1 -2688 3694 2763 810 244 117 35 chrX 76267064 76267541 -86332389 - L1M4c LINE L1 -3760 2622 2185 5710 125 18 1 chrX 76267541 76269058 -86330872 - L1PA13 LINE L1 -6 6157 4627 810 244 117 35 chrX 76269058 76269396 -86330534 - L1M4c LINE L1 -4197 2185 1739 398 304 14 0 chrX 76269397 76269545 -86330385 - L1M4c LINE L1 -4769 1615 1466 4261 231 82 7 chrX 76269563 76270813 -86329117 + L1 LINE L1 3817 5160 -986 23 36 0 54 chrX 76270829 76270885 -86329045 + AT_rich Low_complexity Low_complexity 1 53 0 220 356 46 0 chrX 76271239 76271326 -86328604 + MER5B DNA MER1_type 1 91 -87 183 114 0 0 chrX 76273108 76273143 -86326787 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 299 267 69 23 chrX 76273877 76274008 -86325922 - L1MC4a LINE L1 -1879 5929 5793 847 224 102 14 chrX 76274020 76274233 -86325697 + MER33 DNA MER1_type 4 252 -2333 2128 121 0 3 chrX 76274233 76274547 -86325383 - AluSq SINE Alu 0 313 1 847 224 102 14 chrX 76274547 76274628 -86325302 + MER33 DNA MER1_type 252 324 0 480 281 100 27 chrX 76274629 76275038 -86324892 - L1MC4a LINE L1 -330 5791 5334 423 275 50 0 chrX 76275038 76275158 -86324772 - L2 LINE L2 -6 3307 3182 204 97 0 0 chrX 76275176 76275207 -86324723 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 188 86 29 0 chrX 76275273 76275308 -86324622 + (TA)n Simple_repeat Simple_repeat 1 36 0 890 193 12 0 chrX 76275429 76275590 -86324340 - FAM SINE Alu -11 164 2 615 347 28 4 chrX 76275738 76275989 -86323941 + MIR SINE MIR 5 261 -1 21 36 0 0 chrX 76277367 76277395 -86322535 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 76277476 76277501 -86322429 + AT_rich Low_complexity Low_complexity 1 25 0 11432 256 33 10 chrX 76278100 76279630 -86320300 + L1PA16 LINE L1 1354 2848 -3969 2337 84 7 0 chrX 76279630 76279927 -86320003 + AluY SINE Alu 1 299 -12 11432 256 33 10 chrX 76279927 76282425 -86317505 + L1PA16 LINE L1 2848 5577 -1240 2031 134 13 0 chrX 76282425 76282731 -86317199 + AluSx SINE Alu 1 310 -2 11432 256 33 10 chrX 76282731 76283979 -86315951 + L1PA16 LINE L1 5577 6795 -22 24 0 0 0 chrX 76283979 76284003 -86315927 + AT_rich Low_complexity Low_complexity 1 24 0 230 148 34 47 chrX 76284062 76284211 -86315719 + (TTATA)n Simple_repeat Simple_repeat 2 148 0 305 208 8 108 chrX 76284239 76284359 -86315571 + L1MC4 LINE L1 6596 6703 -1339 1883 148 16 60 chrX 76284382 76284399 -86315531 + L1PB1 LINE L1 5777 5793 -380 234 0 0 0 chrX 76284399 76284425 -86315505 + (CA)n Simple_repeat Simple_repeat 2 27 0 1883 148 16 60 chrX 76284425 76284605 -86315325 + L1PB1 LINE L1 5793 5979 -194 2158 91 28 0 chrX 76284605 76284891 -86315039 + AluSq SINE Alu 1 294 -19 1883 148 16 60 chrX 76284891 76285106 -86314824 + L1PB1 LINE L1 5979 6173 0 470 317 20 45 chrX 76286879 76287078 -86312852 - MIR SINE MIR -56 206 13 2174 80 0 26 chrX 76287399 76287701 -86312229 + AluY SINE Alu 3 296 -15 3153 242 39 14 chrX 76287761 76288634 -86311296 - L1MB8 LINE L1 -12 6166 5272 2841 201 44 38 chrX 76288628 76289375 -86310555 - L1MA9 LINE L1 0 6312 5561 * 2549 110 0 0 chrX 76289376 76289730 -86310200 - THE1A LTR MaLR -1 354 1 7889 128 3 3 chrX 76289730 76290867 -86309063 - THE1A-int LTR MaLR 0 1580 443 4095 282 66 25 chrX 76291158 76293391 -86306539 - L1MB8 LINE L1 -860 5286 2963 4761 198 15 10 chrX 76293415 76294935 -86304995 - L1MA4 LINE L1 -6 6294 4766 3607 158 25 7 chrX 76294940 76295634 -86304296 + L1MA4 LINE L1 4054 4759 -1387 298 242 58 0 chrX 76295640 76295760 -86304170 - L1MB8 LINE L1 -3179 2967 2841 350 253 0 0 chrX 76295760 76295835 -86304095 + FRAM SINE Alu 69 143 -23 321 26 0 0 chrX 76295835 76295873 -86304057 + (CA)n Simple_repeat Simple_repeat 1 38 0 1528 285 41 12 chrX 76295995 76296654 -86303276 + L1M4 LINE L1 4670 5347 -799 33 25 0 0 chrX 76296687 76296727 -86303203 + AT_rich Low_complexity Low_complexity 1 40 0 247 200 57 14 chrX 76296727 76296797 -86303133 - MIR SINE MIR -93 169 97 212 192 39 39 chrX 76297983 76298035 -86301895 + L2 LINE L2 3262 3313 0 374 306 210 18 chrX 76299023 76299304 -86300626 + LTR16B LTR ERVL 115 449 -15 269 274 217 19 chrX 76299743 76299849 -86300081 + MIR SINE MIR 16 142 -66 1790 258 40 54 chrX 76302236 76303065 -86296865 - L1M4 LINE L1 -778 5368 4552 12410 194 28 4 chrX 76303076 76306334 -86293596 - L1M1 LINE L1 -496 7227 3902 13269 111 7 1 chrX 76306334 76309090 -86290840 + L1PA8 LINE L1 3369 6139 -33 312 244 0 0 chrX 76309090 76309176 -86290754 + (TA)n Simple_repeat Simple_repeat 2 87 0 11512 179 50 2 chrX 76309191 76311268 -86288662 - L1M1 LINE L1 -4674 2891 716 285 275 0 0 chrX 76311615 76311706 -86288224 - MER113 DNA MER1_type? -430 91 1 229 122 24 0 chrX 76312780 76312821 -86287109 + MIR SINE MIR 74 115 -147 312 299 239 6 chrX 76313199 76313366 -86286564 + MIR SINE MIR 2 207 -55 377 234 43 14 chrX 76314221 76314362 -86285568 + L1ME4a LINE L1 5966 6110 -11 647 131 0 10 chrX 76314746 76314845 -86285085 + MER4A LTR ERV1 1 98 -566 1868 123 9 22 chrX 76314845 76315195 -86284735 + MER4A LTR ERV1 261 664 0 397 408 13 13 chrX 76315270 76315503 -86284427 + MIR SINE MIR 28 260 -2 2164 227 31 13 chrX 76315572 76316181 -86283749 + MER67C LTR ERV1 1 692 -18 1362 116 74 9 chrX 76316231 76316447 -86283483 - MER30 DNA MER1_type 0 230 1 2042 253 36 24 chrX 76316582 76317273 -86282657 + LTR27 LTR ERV1 3 636 0 354 284 84 65 chrX 76317938 76317969 -86281961 - L1MC4 LINE L1 -396 7646 7617 2363 110 0 0 chrX 76317969 76318279 -86281651 - AluSg SINE Alu 0 310 1 354 284 84 65 chrX 76318279 76318603 -86281327 - L1MC4 LINE L1 -425 7617 7284 275 301 59 29 chrX 76318603 76318739 -86281191 - MER5B DNA MER1_type -37 141 2 287 349 26 26 chrX 76318774 76318926 -86281004 + MIR SINE MIR 50 201 -61 21 0 0 0 chrX 76318950 76318971 -86280959 + AT_rich Low_complexity Low_complexity 1 21 0 425 321 60 46 chrX 76319973 76320275 -86279655 + L2 LINE L2 3008 3313 0 30 69 0 0 chrX 76320285 76320343 -86279587 + AT_rich Low_complexity Low_complexity 1 58 0 246 364 23 0 chrX 76320510 76320598 -86279332 - MIR SINE MIR -79 129 40 1038 244 16 4 chrX 76321060 76321302 -86278628 + L1MDa LINE L1 18 262 -6278 894 227 82 26 chrX 76321307 76321493 -86278437 - L1MDa LINE L1 -4661 1879 1672 1165 273 11 24 chrX 76321493 76321863 -86278067 + MLT1A1 LTR MaLR 1 365 0 894 227 82 26 chrX 76321863 76321945 -86277985 - L1MDa LINE L1 -4868 1672 1596 559 211 58 0 chrX 76322036 76322207 -86277723 + L1MDa LINE L1 2380 2560 -3980 207 342 0 66 chrX 76323453 76323529 -86276401 + MIR SINE MIR 12 82 -180 201 74 0 0 chrX 76323533 76323560 -86276370 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 760 143 8 15 chrX 76323620 76323753 -86276177 + AluJb SINE Alu 3 134 -178 252 278 14 14 chrX 76323781 76323853 -86276077 + MIR SINE MIR 174 245 -17 23 0 0 0 chrX 76323964 76323987 -86275943 + AT_rich Low_complexity Low_complexity 1 23 0 243 181 34 34 chrX 76323994 76324171 -86275759 + (TA)n Simple_repeat Simple_repeat 2 178 0 379 258 103 86 chrX 76326244 76326535 -86273395 - L1ME4a LINE L1 0 6121 5826 312 309 16 0 chrX 76326573 76326696 -86273234 - L1ME4a LINE L1 -403 5718 5594 2400 215 42 10 chrX 76326749 76327248 -86272682 + L1MA4A LINE L1 10 528 -6321 2622 108 8 0 chrX 76327248 76327620 -86272310 - THE1C LTR MaLR 0 375 1 9024 148 2 69 chrX 76327620 76328776 -86271154 - THE1C-int LTR MaLR 0 1580 570 2157 122 3 0 chrX 76328776 76329079 -86270851 - AluSx SINE Alu -8 304 1 9024 148 2 69 chrX 76329079 76329614 -86270316 - THE1C-int LTR MaLR -1010 570 1 2160 156 13 5 chrX 76329614 76329986 -86269944 - THE1C LTR MaLR 0 375 1 10500 238 19 12 chrX 76329986 76332809 -86267121 + L1MA4A LINE L1 522 3366 -3482 8361 188 74 10 chrX 76332812 76335892 -86264038 + L1MA4A LINE L1 3709 6999 -6 28 29 0 0 chrX 76336075 76336110 -86263820 + AT_rich Low_complexity Low_complexity 1 35 0 6049 42 1 0 chrX 76336209 76336956 -86262974 - L1PA4 LINE L1 -1236 4910 4163 7359 36 2 1 chrX 76336955 76338187 -86261743 + L1PA4 LINE L1 4922 6154 -1 819 214 62 142 chrX 76338750 76338920 -86261010 - MLT1A2 LTR MaLR 0 374 192 534 194 0 9 chrX 76338920 76339201 -86260729 + L1PA4 LINE L1 6036 6315 0 819 214 62 142 chrX 76339201 76339428 -86260502 - MLT1A2 LTR MaLR -182 192 6 194 243 168 19 chrX 76339493 76339600 -86260330 - MIR SINE MIR -62 200 78 248 93 23 0 chrX 76339777 76339820 -86260110 + L1MA8 LINE L1 6223 6266 -25 373 293 172 9 chrX 76339918 76340133 -86259797 - L1MC4a LINE L1 -1818 5990 5741 1086 121 0 0 chrX 76340138 76340287 -86259643 + AluSg/x SINE Alu 138 286 -26 22 0 0 0 chrX 76340287 76340309 -86259621 + AT_rich Low_complexity Low_complexity 1 22 0 1737 213 39 37 chrX 76340719 76341127 -86258803 - LTR2 LTR ERV1 0 449 41 2555 210 48 12 chrX 76341215 76341814 -86258116 - L1MD2 LINE L1 -59 6300 5680 2011 161 13 0 chrX 76341869 76342179 -86257751 + HERVL18 LTR ERVL 4787 5100 -947 * 13870 151 28 7 chrX 76342177 76344339 -86255591 - HERVL18 LTR ERVL -1290 4757 2549 2424 99 68 0 chrX 76344339 76344692 -86255238 - MER51B LTR ERV1 0 377 1 9851 149 60 41 chrX 76344697 76346877 -86253053 - MER51B-int LTR ERV1 -3 7813 5410 3683 129 17 18 chrX 76346874 76347899 -86252031 - MER51B-int LTR ERV1 -2570 2647 1482 * 8347 109 74 5 chrX 76347880 76349315 -86250615 - MER51B-int LTR ERV1 -4489 3327 1794 666 188 26 78 chrX 76349319 76349473 -86250457 - MER4A LTR ERV1 -147 517 372 245 208 0 0 chrX 76349515 76349563 -86250367 - MER4A LTR ERV1 -566 98 51 3747 165 31 23 chrX 76349579 76350984 -86248946 - MER51B-int LTR ERV1 -6321 1495 1 2222 114 61 14 chrX 76350984 76351344 -86248586 - MER51B LTR ERV1 0 377 1 14352 153 8 6 chrX 76351344 76353817 -86246113 - HERVL18 LTR ERVL -3495 2552 7 1317 249 84 15 chrX 76353829 76354163 -86245767 - LTR18A LTR ERVL 0 357 1 4100 163 40 4 chrX 76354164 76355165 -86244765 + L1M1 LINE L1 2868 3903 -3662 1353 277 52 66 chrX 76355213 76356071 -86243859 + Charlie7 DNA MER1_type 60 905 -1707 4310 201 52 11 chrX 76356100 76357094 -86242836 - L1MA4A LINE L1 -5 7000 5966 * 7257 228 77 86 chrX 76357086 76357176 -86242754 - L1MA4A LINE L1 -2285 4563 4474 1819 164 156 8 chrX 76357176 76357549 -86242381 - MSTA LTR MaLR 0 428 1 7942 202 43 3 chrX 76357549 76359137 -86240793 - MSTA-int LTR MaLR 0 1651 1 1880 174 129 5 chrX 76359139 76359518 -86240412 - MSTA LTR MaLR -2 426 1 7257 228 77 86 chrX 76359518 76364010 -86235920 - L1MA4A LINE L1 -2374 4474 13 241 200 0 17 chrX 76364055 76364115 -86235815 + Charlie7 DNA MER1_type 2398 2456 -156 303 263 59 42 chrX 76364235 76364353 -86235577 + L1M4b LINE L1 30 149 -6710 1169 341 9 20 chrX 76364763 76365220 -86234710 - L1M3a LINE L1 -5503 452 1 275 286 50 25 chrX 76365305 76365424 -86234506 + MIR3 SINE MIR 87 208 0 1013 199 21 25 chrX 76367481 76367722 -86232208 - L1 LINE L1 -1812 4334 4095 30182 127 52 16 chrX 76368530 76373706 -86226224 + L1P LINE L1 2 5365 -781 14352 47 0 0 chrX 76373703 76375502 -86224428 - L1P LINE L1 -3161 2985 1187 * 4319 26 0 0 chrX 76375502 76376005 -86223925 + L1PA3 LINE L1 5653 6155 0 1293 210 95 17 chrX 76376021 76376140 -86223790 - L1M4 LINE L1 -545 5639 5531 1809 81 132 0 chrX 76376140 76376413 -86223517 - AluY SINE Alu -2 309 1 1293 210 95 17 chrX 76376413 76376680 -86223250 - L1M4 LINE L1 -653 5531 5223 5856 72 18 0 chrX 76376691 76377474 -86222456 + L1PA7 LINE L1 5352 6148 -6 685 330 0 5 chrX 76378322 76378537 -86221393 + LTR33 LTR ERVL 3 216 -305 1453 175 75 55 chrX 76378567 76378773 -86221157 - L1P5 LINE L1 -697 5454 5254 6125 165 39 5 chrX 76378773 76379962 -86219968 + Tigger3b DNA MER2_type 3 1231 0 1453 175 75 55 chrX 76379962 76380014 -86219916 - L1P5 LINE L1 -897 5254 5205 3761 168 32 27 chrX 76380014 76380795 -86219135 - LTR1 LTR ERV1 0 785 1 1453 175 75 55 chrX 76380795 76381048 -86218882 - L1P5 LINE L1 -946 5205 4935 4855 181 8 6 chrX 76381055 76382003 -86217927 - L1MA4A LINE L1 -2 6301 5352 1448 293 71 42 chrX 76382004 76382660 -86217270 - L1M4 LINE L1 -5790 752 72 318 26 0 0 chrX 76382660 76382699 -86217231 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1448 293 71 42 chrX 76382699 76382756 -86217174 - L1M4 LINE L1 -6470 72 18 33 43 0 0 chrX 76382998 76383045 -86216885 + AT_rich Low_complexity Low_complexity 1 47 0 704 250 7 0 chrX 76383051 76383195 -86216735 - FRAM SINE Alu -32 144 1 208 255 32 45 chrX 76383359 76383516 -86216414 + T-rich Low_complexity Low_complexity 2 156 0 774 335 72 24 chrX 76383981 76384399 -86215531 - LTR33 LTR ERVL -10 511 74 251 232 0 95 chrX 76384444 76384539 -86215391 - MLT1A1-int LTR MaLR -272 1099 1014 * 617 201 16 5 chrX 76384525 76384662 -86215268 - L1MA7 LINE L1 -3 6496 6363 2529 111 11 6 chrX 76384662 76385024 -86214906 - THE1B LTR MaLR 0 364 1 617 201 16 5 chrX 76385024 76385039 -86214891 - L1MA7 LINE L1 -136 6363 6350 8591 220 58 30 chrX 76385114 76390520 -86209410 - L1MA7 LINE L1 -270 6225 671 1076 314 31 39 chrX 76390542 76391055 -86208875 - L1MA7 LINE L1 -5772 509 1 2532 270 31 101 chrX 76391061 76392041 -86207889 - MLT1A1-int LTR MaLR -350 1385 475 2034 227 56 0 chrX 76392190 76392621 -86207309 - MLT1A1-int LTR MaLR -1280 455 1 777 192 60 0 chrX 76392632 76392783 -86207147 - MLT1A1 LTR MaLR -12 353 194 264 120 0 0 chrX 76392829 76392879 -86207051 + (T)n Simple_repeat Simple_repeat 1 50 0 1104 8 0 0 chrX 76392883 76393009 -86206921 - L1PA2 LINE L1 0 6155 6030 677 248 0 0 chrX 76393013 76393158 -86206772 - MLT1A1 LTR MaLR -213 152 8 267 307 29 78 chrX 76393658 76393863 -86206067 + L2 LINE L2 2805 2999 -273 21 57 0 0 chrX 76394660 76394695 -86205235 + AT_rich Low_complexity Low_complexity 1 35 0 1219 264 32 75 chrX 76394878 76395385 -86204545 + MER77 LTR ERV1 82 566 -39 361 236 67 41 chrX 76395500 76395695 -86204235 - MER69 DNA AcHobo -169 2357 2158 232 378 75 45 chrX 76395956 76396461 -86203469 - L2 LINE L2 -667 2647 2128 301 313 60 33 chrX 76396465 76396615 -86203315 + MIR SINE MIR 4 157 -105 484 17 0 0 chrX 76396692 76396750 -86203180 - L1PA6 LINE L1 -6 6148 6091 211 279 89 0 chrX 76396804 76396883 -86203047 - L2 LINE L2 -1479 1835 1750 1243 325 45 14 chrX 76396889 76397382 -86202548 + L1MB1 LINE L1 417 924 -5379 1757 273 37 40 chrX 76397648 76398113 -86201817 + L1MB1 LINE L1 1071 1536 -4846 2487 24 42 0 chrX 76398113 76398401 -86201529 + AluY SINE Alu 1 300 -11 1757 273 37 40 chrX 76398401 76398689 -86201241 + L1MB1 LINE L1 1536 1896 -4486 252 86 0 0 chrX 76398689 76398724 -86201206 + (CA)n Simple_repeat Simple_repeat 2 36 0 1757 273 37 40 chrX 76398724 76398911 -86201019 + L1MB1 LINE L1 1896 2082 -4300 505 215 0 44 chrX 76399027 76399162 -86200768 + L1MB1 LINE L1 2307 2435 -3947 25 51 0 0 chrX 76399162 76399201 -86200729 + AT_rich Low_complexity Low_complexity 1 39 0 9493 231 25 55 chrX 76399226 76402619 -86197311 + L1MB1 LINE L1 2446 5738 -666 4700 157 12 11 chrX 76402595 76403400 -86196530 + L1PA15 LINE L1 5588 6393 -8 * 3018 182 18 58 chrX 76403396 76404106 -86195824 + L1MB1 LINE L1 5721 6402 -2 * 215 303 254 0 chrX 76404839 76404961 -86194969 - L2 LINE L2 -553 2761 2609 25 31 0 0 chrX 76405349 76405381 -86194549 + AT_rich Low_complexity Low_complexity 1 32 0 191 356 53 8 chrX 76405767 76405899 -86194031 - L3b LINE CR1 -199 1384 1247 6117 211 20 11 chrX 76406251 76408581 -86191349 - L1PA15 LINE L1 0 6165 3859 2252 108 3 0 chrX 76409327 76409624 -86190306 + AluSq SINE Alu 1 298 -15 248 275 62 88 chrX 76410045 76410205 -86189725 - L2 LINE L2 0 3272 3117 280 259 0 0 chrX 76410271 76410325 -86189605 + L2 LINE L2 3193 3246 -26 802 286 14 0 chrX 76410579 76410789 -86189141 + MIR SINE MIR 50 262 0 2090 48 17 62 chrX 76410830 76411120 -86188810 - AluY SINE Alu -34 277 1 11382 235 31 54 chrX 76412449 76414243 -86185687 + L1PA15 LINE L1 1 1836 -5767 314 44 0 22 chrX 76414243 76414288 -86185642 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 11382 235 31 54 chrX 76414288 76415094 -86184836 + L1PA15 LINE L1 1836 2660 -4943 1516 43 0 0 chrX 76415094 76415281 -86184649 - L1PA4 LINE L1 0 6155 5969 11382 235 31 54 chrX 76415281 76416442 -86183488 + L1PA15 LINE L1 2660 3847 -3756 1810 148 7 14 chrX 76416442 76416739 -86183191 + AluSq SINE Alu 5 299 -14 11382 235 31 54 chrX 76416739 76416830 -86183100 + L1PA15 LINE L1 3847 3939 -3664 4382 34 8 0 chrX 76416830 76417361 -86182569 + L1PA4 LINE L1 5621 6155 0 11382 235 31 54 chrX 76417361 76420560 -86179370 + L1PA15 LINE L1 3939 7602 -1 3347 175 39 12 chrX 76420620 76421305 -86178625 + L1MA2 LINE L1 5597 6300 -4 2075 159 2 48 chrX 76421328 76421604 -86178326 + L1PA15 LINE L1 5769 6021 -144 1906 115 18 11 chrX 76421604 76421921 -86178009 + AluSc SINE Alu 1 309 0 2075 159 2 48 chrX 76421921 76422059 -86177871 + L1PA15 LINE L1 6021 6164 -1 350 235 154 52 chrX 76423285 76423421 -86176509 + MIR3 SINE MIR 58 207 -1 21 0 0 0 chrX 76423510 76423531 -86176399 + AT_rich Low_complexity Low_complexity 1 21 0 206 278 0 0 chrX 76423605 76423659 -86176271 - MIR SINE MIR -113 149 96 180 324 14 0 chrX 76423692 76423766 -86176164 - MIR SINE MIR -30 232 158 451 320 67 5 chrX 76424209 76424403 -86175527 + MIR SINE MIR 7 212 -50 13510 159 27 104 chrX 76425536 76429058 -86170872 + L1PA8 LINE L1 7 3254 -2892 11992 122 1 11 chrX 76429068 76431814 -86168116 + L1PA8 LINE L1 3449 6165 -7 9125 239 37 23 chrX 76431890 76434289 -86165641 + L1PA13 LINE L1 1 2473 -4324 2124 79 3 38 chrX 76434289 76434638 -86165292 - AluY SINE Alu 0 339 1 9125 239 37 23 chrX 76434638 76435768 -86164162 + L1PA13 LINE L1 2473 3586 -3211 5915 70 0 64 chrX 76435770 76436651 -86163279 + L1PA7 LINE L1 5330 6154 0 1238 144 0 0 chrX 76436659 76436854 -86163076 + L1PA15 LINE L1 5968 6162 -3 976 210 57 109 chrX 76437092 76437478 -86162452 - MLT1A2 LTR MaLR -8 366 1 26 50 0 0 chrX 76438234 76438274 -86161656 + AT_rich Low_complexity Low_complexity 1 40 0 367 327 28 0 chrX 76439041 76439148 -86160782 + L2 LINE L2 3204 3313 0 303 349 82 40 chrX 76439426 76439791 -86160139 - L2 LINE L2 -203 3069 2687 23 54 0 0 chrX 76439916 76439953 -86159977 + AT_rich Low_complexity Low_complexity 1 37 0 586 83 0 0 chrX 76440159 76440243 -86159687 - L1MA2 LINE L1 0 6304 6221 22 56 0 0 chrX 76440384 76440420 -86159510 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chrX 76441296 76441321 -86158609 + AT_rich Low_complexity Low_complexity 1 25 0 27 73 0 0 chrX 76441992 76442047 -86157883 + AT_rich Low_complexity Low_complexity 1 55 0 329 349 112 13 chrX 76442288 76442440 -86157490 + MIR SINE MIR 30 196 -66 315 386 34 39 chrX 76442441 76442674 -86157256 + MLT1I LTR MaLR 68 299 -110 198 0 0 0 chrX 76443461 76443483 -86156447 + (GA)n Simple_repeat Simple_repeat 1 22 0 601 311 67 18 chrX 76444036 76444261 -86155669 - MIR SINE MIR -4 258 23 317 285 2 2 chrX 76444895 76444980 -86154950 + MIR SINE MIR 64 147 -62 222 231 58 0 chrX 76444984 76445036 -86154894 - L2 LINE L2 -15 3257 3203 319 239 80 0 chrX 76445215 76445303 -86154627 + MIR SINE MIR 167 261 -1 612 283 107 66 chrX 76445337 76445870 -86154060 - MLT1H1 LTR MaLR 0 555 1 2271 145 14 0 chrX 76446523 76446882 -86153048 - THE1B LTR MaLR 0 364 1 21 0 0 0 chrX 76446924 76446945 -86152985 + AT_rich Low_complexity Low_complexity 1 21 0 375 347 145 33 chrX 76446946 76447430 -86152500 + L2 LINE L2 2201 2738 -576 22 35 0 0 chrX 76447597 76447626 -86152304 + AT_rich Low_complexity Low_complexity 1 29 0 9956 192 27 32 chrX 76447626 76448498 -86151432 - L1MA7 LINE L1 -2 6289 5415 1437 54 36 54 chrX 76448498 76448719 -86151211 - L1PA7 LINE L1 -1 6153 5937 9956 192 27 32 chrX 76448719 76450341 -86149589 - L1MA7 LINE L1 -876 5415 3707 4764 38 3 0 chrX 76450341 76450914 -86149016 - L1PA3 LINE L1 0 6155 5581 9956 192 27 32 chrX 76450914 76451626 -86148304 - L1MA7 LINE L1 -2584 3707 2993 2038 156 43 0 chrX 76451620 76451992 -86147938 - L1P LINE L1 -952 5194 4807 * 294 303 119 22 chrX 76451988 76452293 -86147637 - L1M4c LINE L1 -4059 3508 3180 * 25923 98 8 3 chrX 76452332 76456914 -86143016 - L1PA7 LINE L1 -5 6464 1862 1235 133 0 0 chrX 76456920 76457100 -86142830 - L1PA7 LINE L1 -6281 180 1 1822 266 52 16 chrX 76457167 76458234 -86141696 - L1M2 LINE L1 -4158 1877 797 238 385 12 0 chrX 76458295 76458378 -86141552 - L1M2 LINE L1 -5570 385 302 321 242 11 53 chrX 76459321 76459416 -86140514 + MIR SINE MIR 81 171 -91 409 277 54 0 chrX 76459427 76459539 -86140391 + L2 LINE L2 3191 3308 -5 228 278 0 56 chrX 76459629 76459701 -86140229 + L2 LINE L2 3011 3078 -235 400 311 100 56 chrX 76459852 76460511 -86139419 + L1MB3 LINE L1 3 690 -5852 193 310 42 28 chrX 76460592 76460663 -86139267 + L2 LINE L2 3002 3073 -199 3416 250 49 17 chrX 76460785 76462403 -86137527 + L1MB3 LINE L1 978 2739 -3907 262 136 91 0 chrX 76462419 76462463 -86137467 - MLT1A1 LTR MaLR -2 394 347 264 122 0 0 chrX 76462478 76462519 -86137411 + (TG)n Simple_repeat Simple_repeat 2 42 0 573 86 53 46 chrX 76462561 76462864 -86137066 + (TA)n Simple_repeat Simple_repeat 1 305 0 279 0 0 0 chrX 76462910 76462941 -86136989 + (TA)n Simple_repeat Simple_repeat 1 31 0 637 257 40 87 chrX 76462941 76463241 -86136689 - MLT1A1 LTR MaLR -79 286 1 6732 264 51 14 chrX 76463253 76463281 -86136649 + L1MB3 LINE L1 2760 2786 -3858 822 299 103 12 chrX 76463281 76463706 -86136224 - MLT1C LTR MaLR -3 464 1 6732 264 51 14 chrX 76463706 76466240 -86133690 + L1MB3 LINE L1 2786 5416 -1228 990 30 15 8 chrX 76466240 76466371 -86133559 + AluY SINE Alu 179 310 -1 1905 216 100 18 chrX 76466379 76467174 -86132756 + L1MB3 LINE L1 5434 6279 -399 780 266 26 18 chrX 76467190 76467512 -86132418 - MLT1B LTR MaLR -8 382 1 1687 205 10 12 chrX 76467512 76467912 -86132018 + L1MB3 LINE L1 6276 6674 -7 254 299 33 14 chrX 76467922 76468133 -86131797 + L1M4 LINE L1 3294 3508 -2638 * 8794 197 40 5 chrX 76468131 76469504 -86130426 + L1PB1 LINE L1 3011 4334 -1817 231 36 0 0 chrX 76469504 76469532 -86130398 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8794 197 40 5 chrX 76469532 76470839 -86129091 + L1PB1 LINE L1 4334 5792 -359 373 140 0 44 chrX 76470839 76470953 -86128977 + (TA)n Simple_repeat Simple_repeat 1 109 0 2373 93 3 0 chrX 76470962 76471284 -86128646 + L1PB1 LINE L1 5785 6107 -44 568 191 37 0 chrX 76471300 76471436 -86128494 + L1M4 LINE L1 3485 3625 -2521 7916 10 0 0 chrX 76471436 76472402 -86127528 - L1HS LINE L1 -1 6154 5189 4499 33 0 0 chrX 76472395 76472939 -86126991 + L1HS LINE L1 4639 5182 -964 * 2306 258 48 26 chrX 76472935 76473891 -86126039 + L1M4 LINE L1 3616 4592 -1554 * 2506 238 30 30 chrX 76473994 76474791 -86125139 - MLT1B-int LTR MaLR -484 887 2 1609 205 85 25 chrX 76474793 76475159 -86124771 - MLT1B LTR MaLR 0 390 3 1454 239 155 56 chrX 76475160 76475877 -86124053 - L1M4c LINE L1 -917 5465 4678 407 225 64 68 chrX 76475902 76476059 -86123871 - FLAM_C SINE Alu -12 121 1 2159 166 30 10 chrX 76476136 76476539 -86123391 - L1PA15 LINE L1 -2 6163 5753 2834 134 7 28 chrX 76476552 76477014 -86122916 - L1PA15 LINE L1 -210 6606 6155 14687 227 22 17 chrX 76478177 76482718 -86117212 - L1PA15 LINE L1 -677 6139 1565 1952 229 130 32 chrX 76482727 76483387 -86116543 + MER50 LTR ERV1 10 734 0 1300 269 26 7 chrX 76483387 76483692 -86116238 - L1PA15 LINE L1 -5222 1565 1255 409 242 23 0 chrX 76483707 76483835 -86116095 - L1M4c LINE L1 -1735 4647 4517 * 1478 167 65 3 chrX 76483832 76484125 -86115805 + MSTA-int LTR MaLR 1341 1651 0 2002 222 21 0 chrX 76484125 76484544 -86115386 + MSTA LTR MaLR 1 428 0 4456 85 3 5 chrX 76484553 76485166 -86114764 - L1PA8 LINE L1 -223 5949 5338 4024 112 0 0 chrX 76485167 76485766 -86114164 + L1PA8 LINE L1 4739 5337 -809 589 267 45 0 chrX 76485765 76485986 -86113944 - L1M4c LINE L1 -2627 3755 3525 * 978 152 3 117 chrX 76487070 76487314 -86112616 - L1M2 LINE L1 -503 5659 5464 792 250 40 88 chrX 76487291 76487422 -86112508 - L1M4c LINE L1 -2847 3535 3399 * 2416 73 0 16 chrX 76487422 76487738 -86112192 - AluY SINE Alu 0 311 1 792 250 40 88 chrX 76487738 76488164 -86111766 - L1M4c LINE L1 -2983 3399 3018 1252 241 14 0 chrX 76488164 76488455 -86111475 - AluJb SINE Alu -17 295 1 792 250 40 88 chrX 76488455 76488622 -86111308 - L1M4c LINE L1 -3364 3018 2845 977 266 35 14 chrX 76488646 76488932 -86110998 + MLT2D LTR ERVL 6 297 -117 515 219 19 0 chrX 76488932 76489037 -86110893 + ERVL-D LTR ERVL 4334 4440 -1324 1907 212 82 9 chrX 76489037 76489476 -86110454 + ERVL-D LTR ERVL 4554 5024 -740 * 2059 197 108 4 chrX 76489474 76489976 -86109954 + ERVL-D LTR ERVL 5204 5757 -7 1371 258 40 0 chrX 76489976 76490329 -86109601 + MLT2D LTR ERVL 1 367 -47 225 65 0 0 chrX 76490384 76490415 -86109515 + (CA)n Simple_repeat Simple_repeat 2 32 0 1312 213 70 27 chrX 76490416 76490524 -86109406 - MER2 DNA MER2_type -3 342 240 2266 107 0 3 chrX 76490524 76490832 -86109098 + AluSg SINE Alu 1 307 -3 1312 213 70 27 chrX 76490832 76491003 -86108927 - MER2 DNA MER2_type -105 240 45 2165 132 19 30 chrX 76491003 76491368 -86108562 - THE1B LTR MaLR 0 364 4 1312 213 70 27 chrX 76491368 76491415 -86108515 - MER2 DNA MER2_type -300 45 1 252 271 0 56 chrX 76491458 76491519 -86108411 + (TA)n Simple_repeat Simple_repeat 2 65 -37 2202 144 8 22 chrX 76491519 76491888 -86108042 - THE1B LTR MaLR 0 364 1 10698 113 16 12 chrX 76491890 76493462 -86106468 - THE1B-int LTR MaLR -2 1578 1 1928 168 8 50 chrX 76493462 76493842 -86106088 - THE1B LTR MaLR 0 364 1 252 271 0 56 chrX 76493842 76493883 -86106047 + (TA)n Simple_repeat Simple_repeat 64 102 0 979 290 32 2 chrX 76493950 76494360 -86105570 - L1M4c LINE L1 -3565 2817 2396 558 252 0 0 chrX 76494368 76494503 -86105427 - FLAM_C SINE Alu -6 137 3 1329 231 107 48 chrX 76494570 76495354 -86104576 - L1M4c LINE L1 -4022 2362 1533 2667 242 82 11 chrX 76495356 76496208 -86103722 + L1MB4 LINE L1 4868 5841 -339 180 111 0 0 chrX 76496208 76496235 -86103695 + (CA)n Simple_repeat Simple_repeat 2 28 0 2667 242 82 11 chrX 76496235 76496601 -86103329 + L1MB4 LINE L1 5841 6180 0 594 306 47 13 chrX 76496797 76497032 -86102898 - MIR SINE MIR 0 262 20 224 86 52 17 chrX 76497057 76497115 -86102815 + (TA)n Simple_repeat Simple_repeat 1 60 0 343 58 40 75 chrX 76497139 76497313 -86102617 + (TA)n Simple_repeat Simple_repeat 1 168 0 276 188 28 72 chrX 76497334 76497515 -86102415 + (CATATA)n Simple_repeat Simple_repeat 3 175 0 * 452 127 80 26 chrX 76497415 76497808 -86102122 + (CTATA)n Simple_repeat Simple_repeat 1 413 0 312 275 0 18 chrX 76497880 76497989 -86101941 - L1 LINE L1 -2579 4629 4523 1562 171 147 21 chrX 76497989 76498369 -86101561 - MSTA LTR MaLR 0 428 1 8732 162 9 38 chrX 76498369 76499977 -86099953 - MSTA-int LTR MaLR 0 1580 19 1577 163 206 0 chrX 76499996 76500181 -86099749 - MSTA LTR MaLR 0 428 282 366 23 0 0 chrX 76500181 76500224 -86099706 + (GA)n Simple_repeat Simple_repeat 1 43 0 1577 163 206 0 chrX 76500224 76500393 -86099537 - MSTA LTR MaLR -146 282 1 3205 249 57 77 chrX 76500393 76501531 -86098399 - L1 LINE L1 -2681 4527 3368 1963 153 7 0 chrX 76501531 76501818 -86098112 - AluSx SINE Alu -23 289 1 3205 249 57 77 chrX 76501818 76505226 -86094704 - L1 LINE L1 -3840 3368 1 4146 173 35 40 chrX 76505278 76506254 -86093676 - L1MA9 LINE L1 -10 7262 6292 1821 205 26 139 chrX 76506254 76506304 -86093626 - MLT2B3 LTR ERVL 0 554 500 356 0 23 0 chrX 76506304 76506348 -86093582 + (TG)n Simple_repeat Simple_repeat 1 45 0 1821 205 26 139 chrX 76506348 76506922 -86093008 - MLT2B3 LTR ERVL -54 500 1 1003 172 54 23 chrX 76506922 76507183 -86092747 - L1MA9 LINE L1 -810 6296 6028 * 2961 257 62 42 chrX 76507161 76507250 -86092680 - L1MA9 LINE L1 -4807 2230 2144 2855 198 4 5 chrX 76507250 76507801 -86092129 - MER44D DNA MER2_type 0 605 1 2961 257 62 42 chrX 76507801 76509083 -86090847 - L1MA9 LINE L1 -4893 2144 815 240 35 0 0 chrX 76509273 76509302 -86090628 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 244 263 13 40 chrX 76509308 76509384 -86090546 - L2 LINE L2 -20 3293 3220 413 277 21 0 chrX 76510638 76510779 -86089151 + CT-rich Low_complexity Low_complexity 1 144 0 23 0 0 0 chrX 76510815 76510838 -86089092 + AT_rich Low_complexity Low_complexity 1 23 0 189 355 21 32 chrX 76511134 76511227 -86088703 + L2 LINE L2 2222 2313 -1001 251 372 45 45 chrX 76511355 76511710 -86088220 + L2 LINE L2 2554 2908 -406 24 32 0 0 chrX 76512053 76512084 -86087846 + AT_rich Low_complexity Low_complexity 1 31 0 188 308 0 0 chrX 76513878 76513917 -86086013 + L2 LINE L2 3259 3297 -16 183 42 0 0 chrX 76515266 76515290 -86084640 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 718 281 67 13 chrX 76515704 76515942 -86083988 - MIR SINE MIR -1 261 11 7189 36 6 0 chrX 76515948 76517604 -86082326 - L1PA4 LINE L1 0 6155 4518 2242 113 0 0 chrX 76518261 76518563 -86081367 - AluSx SINE Alu -6 306 5 2832 190 20 24 chrX 76519169 76519807 -86080123 + L1MB5 LINE L1 5531 6166 -8 1898 278 48 13 chrX 76520043 76520904 -86079026 - L1M4 LINE L1 -2191 3955 3065 1000 192 77 0 chrX 76520923 76521143 -86078787 + AluJo SINE Alu 87 320 0 3063 206 8 8 chrX 76521155 76521743 -86078187 + LTR69 LTR ERVL 1 588 0 255 250 128 24 chrX 76521747 76521911 -86078019 - L1M4 LINE L1 -3105 3041 2861 * 950 77 8 0 chrX 76521898 76522028 -86077902 - L1PB1 LINE L1 -32 6119 5989 274 98 137 0 chrX 76522027 76522078 -86077852 + L1PA13 LINE L1 5970 6027 -136 * 1318 237 37 77 chrX 76522119 76522217 -86077713 - L1M4 LINE L1 -3265 2881 2781 4475 183 10 10 chrX 76522217 76522774 -86077156 + L1PA16 LINE L1 4795 5351 -815 1865 101 4 16 chrX 76522774 76523032 -86076898 - AluSq SINE Alu -10 303 49 4475 183 10 10 chrX 76523032 76523828 -86076102 + L1PA16 LINE L1 5350 6148 -18 1318 237 37 77 chrX 76523828 76524404 -86075526 - L1M4 LINE L1 -3365 2781 2234 * 2484 250 64 47 chrX 76524386 76524876 -86075054 + L1MD1 LINE L1 3921 4401 -1958 1995 126 0 23 chrX 76524876 76525177 -86074753 - AluSg SINE Alu -16 294 1 2484 250 64 47 chrX 76525177 76525716 -86074214 + L1MD1 LINE L1 4401 4929 -1430 617 234 0 0 chrX 76525716 76525840 -86074090 + FLAM_C SINE Alu 5 128 -5 2484 250 64 47 chrX 76525840 76526549 -86073381 + L1MD1 LINE L1 4929 5698 -661 245 213 16 0 chrX 76526565 76526626 -86073304 + L1MD1 LINE L1 6168 6229 -13 249 33 0 0 chrX 76526748 76526778 -86073152 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 42033 40 21 3 chrX 76526778 76532808 -86067122 - L1PA3 LINE L1 -10 6145 1 290 327 105 86 chrX 76532942 76533257 -86066673 - L2 LINE L2 -23 3249 2929 1676 142 96 34 chrX 76533324 76533502 -86066428 + THE1C LTR MaLR 1 166 -209 216 0 0 0 chrX 76533502 76533526 -86066404 + (TC)n Simple_repeat Simple_repeat 2 25 0 1676 142 96 34 chrX 76533526 76533700 -86066230 + THE1C LTR MaLR 166 375 0 497 217 0 0 chrX 76533853 76533945 -86065985 - MER81 DNA DNA -15 99 8 369 243 0 0 chrX 76535262 76535332 -86064598 - L2 LINE L2 0 3313 3244 32 43 0 0 chrX 76535337 76535383 -86064547 + AT_rich Low_complexity Low_complexity 1 46 0 594 243 0 0 chrX 76535555 76535699 -86064231 - L1MC3 LINE L1 -163 7622 7479 236 160 40 0 chrX 76535716 76535766 -86064164 - L1MB5 LINE L1 -8 6166 6115 537 333 22 31 chrX 76535777 76536002 -86063928 + L1PA13 LINE L1 788 1010 -6564 * 2217 272 43 16 chrX 76535998 76536759 -86063171 + L1PA13 LINE L1 2179 2960 -4621 7577 152 25 36 chrX 76536763 76537363 -86062567 + LTR8-int LTR ERV1 2347 2953 -3310 2264 114 0 0 chrX 76537363 76537669 -86062261 + AluSg SINE Alu 1 306 -4 7577 152 25 36 chrX 76537669 76539981 -86059949 + LTR8-int LTR ERV1 2953 6263 0 3022 183 12 82 chrX 76539981 76540064 -86059866 + LTR8 LTR ERV1 1 88 -603 1964 122 44 0 chrX 76540064 76540358 -86059572 - AluSc SINE Alu -2 307 1 3022 183 12 82 chrX 76540358 76541017 -86058913 + LTR8 LTR ERV1 88 691 0 754 207 7 0 chrX 76541018 76541163 -86058767 + AluJb SINE Alu 164 309 -3 603 245 27 0 chrX 76541245 76541433 -86058497 + L1M4 LINE L1 2132 2324 -3822 1241 271 105 22 chrX 76541593 76542242 -86057688 + L1M4 LINE L1 2316 3018 -3128 5741 201 28 2 chrX 76542251 76544254 -86055676 + L1PA14 LINE L1 4135 6157 -4 32 0 0 0 chrX 76544256 76544288 -86055642 + AT_rich Low_complexity Low_complexity 1 32 0 694 241 47 5 chrX 76544295 76544486 -86055444 - L1M4 LINE L1 -370 7227 7029 299 103 13 141 chrX 76544492 76544570 -86055360 + MADE1 DNA Mariner 1 68 -12 3604 243 30 37 chrX 76544586 76545758 -86054172 - L1M4 LINE L1 -611 6986 5824 2477 86 17 6 chrX 76545758 76546109 -86053821 - L1PA7 LINE L1 0 6154 5800 3604 243 30 37 chrX 76546109 76546484 -86053446 - L1M4 LINE L1 -1773 5824 5448 186 103 0 0 chrX 76546507 76546536 -86053394 + (GGGAGA)n Simple_repeat Simple_repeat 3 31 0 741 192 62 83 chrX 76546544 76546737 -86053193 - MLT2D LTR ERVL -62 352 164 228 266 16 0 chrX 76547007 76547071 -86052859 - MER52A LTR ERV1 -1690 65 1 507 211 177 40 chrX 76547108 76547283 -86052647 + MER52A LTR ERV1 49 247 -1508 4096 153 14 9 chrX 76547283 76548646 -86051284 - L1MA1 LINE L1 -420 5882 4512 18301 213 25 33 chrX 76548660 76554002 -86045928 - L1M4 LINE L1 -2191 5374 1141 258 32 0 0 chrX 76554002 76554033 -86045897 + (TG)n Simple_repeat Simple_repeat 2 32 0 18301 213 25 33 chrX 76554033 76555154 -86044776 - L1M4 LINE L1 -6424 1141 12 1333 337 53 14 chrX 76555812 76555993 -86043937 - L1M4b LINE L1 -5927 932 760 5029 32 0 0 chrX 76555993 76556593 -86043337 - L1PA4 LINE L1 0 6155 5556 1333 337 53 14 chrX 76556593 76556999 -86042931 - L1M4b LINE L1 -6099 760 322 25295 131 14 79 chrX 76557040 76562025 -86037905 - L1P LINE L1 -1474 4672 12 28 48 0 0 chrX 76562056 76562098 -86037832 + AT_rich Low_complexity Low_complexity 1 42 0 744 311 73 9 chrX 76562136 76562669 -86037261 + L1ME4a LINE L1 5525 6106 -15 2382 100 0 0 chrX 76562725 76563035 -86036895 - AluSg SINE Alu 0 310 1 1203 88 18 106 chrX 76563151 76563280 -86036650 - L1MA5A LINE L1 -5 6292 6190 1852 154 3 0 chrX 76563280 76563566 -86036364 - AluSx SINE Alu -25 287 1 1203 88 18 106 chrX 76563566 76563662 -86036268 - L1MA5A LINE L1 -107 6190 6087 313 45 0 197 chrX 76563664 76563689 -86036241 - MADE1 DNA Mariner -27 53 47 2309 70 0 0 chrX 76563689 76563987 -86035943 + L1PA7 LINE L1 5857 6154 0 313 45 0 197 chrX 76563987 76564027 -86035903 - MADE1 DNA Mariner -33 47 1 794 132 2 1 chrX 76564027 76564172 -86035758 - L1MA5A LINE L1 -233 6064 5917 1855 216 68 5 chrX 76564637 76565076 -86034854 - MLT1C LTR MaLR 0 467 1 332 289 183 15 chrX 76565082 76565279 -86034651 + MIR SINE MIR 15 244 -18 390 21 0 0 chrX 76565778 76565825 -86034105 + (TG)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chrX 76567891 76567913 -86032017 + AT_rich Low_complexity Low_complexity 1 22 0 1457 185 40 7 chrX 76568003 76568306 -86031624 - L1PB4 LINE L1 -2 6154 5842 252 268 0 28 chrX 76569013 76569084 -86030846 + 7SK RNA RNA 1 69 -124 322 312 64 35 chrX 76570810 76570951 -86028979 - L3 LINE CR1 -895 682 538 190 313 37 22 chrX 76571032 76571166 -86028764 + L2 LINE L2 679 814 -2500 860 126 0 0 chrX 76571271 76571398 -86028532 - L1MA3 LINE L1 -2 6303 6177 629 342 71 42 chrX 76571464 76572015 -86027915 - L1M3d LINE L1 -5377 514 6 3773 287 73 50 chrX 76572043 76572313 -86027617 + L2 LINE L2 994 1256 -2058 840 246 62 0 chrX 76572313 76572524 -86027406 - MER58A DNA MER1_type 0 224 1 3773 287 73 50 chrX 76572524 76573866 -86026064 + L2 LINE L2 1256 2643 -671 228 315 0 0 chrX 76573984 76574057 -86025873 - MER103 DNA DNA -91 75 3 21 0 0 0 chrX 76575403 76575424 -86024506 + AT_rich Low_complexity Low_complexity 1 21 0 2345 275 51 21 chrX 76575988 76577077 -86022853 + L1ME1 LINE L1 5034 6155 -11 469 284 57 57 chrX 76577177 76577388 -86022542 + MIR SINE MIR 6 216 -46 330 333 133 13 chrX 76577703 76577928 -86022002 - MIR SINE MIR 0 262 11 180 398 44 9 chrX 76577980 76578093 -86021837 - L2 LINE L2 -199 3073 2957 4558 257 20 15 chrX 76579131 76579607 -86020323 + L1PA16 LINE L1 784 1256 -4947 2424 88 0 0 chrX 76579607 76579914 -86020016 + AluSg SINE Alu 1 307 -3 4558 257 20 15 chrX 76579914 76580815 -86019115 + L1PA16 LINE L1 1256 2258 -3945 7485 223 29 16 chrX 76580828 76582769 -86017161 - L1 LINE L1 -1934 4212 2246 6910 224 64 22 chrX 76582794 76585929 -86014001 + L1PA16 LINE L1 2960 6218 -5 24 0 0 0 chrX 76585932 76585956 -86013974 + AT_rich Low_complexity Low_complexity 1 24 0 326 276 276 15 chrX 76585979 76586178 -86013752 + MIR SINE MIR 2 252 -10 926 301 74 39 chrX 76587050 76587837 -86012093 + L1M4 LINE L1 1350 2108 -4536 222 261 0 0 chrX 76587837 76587883 -86012047 + (TA)n Simple_repeat Simple_repeat 2 47 0 926 301 74 39 chrX 76587883 76589080 -86010850 + L1M4 LINE L1 2108 3554 -3090 388 251 10 26 chrX 76589082 76589277 -86010653 + L1M4 LINE L1 3588 3779 -2865 180 354 121 10 chrX 76589368 76589467 -86010463 - MER5B DNA MER1_type 0 178 69 365 282 8 30 chrX 76589479 76589610 -86010320 - MIR SINE MIR -62 200 73 280 333 40 0 chrX 76589928 76590027 -86009903 + L2 LINE L2 3191 3293 -20 228 35 0 0 chrX 76590031 76590060 -86009870 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 556 231 141 6 chrX 76590275 76590431 -86009499 - MIR SINE MIR -1 261 85 189 323 92 43 chrX 76590529 76590693 -86009237 - MIR SINE MIR -10 252 81 249 337 35 41 chrX 76590721 76590893 -86009037 + L2 LINE L2 2862 3032 -240 2333 162 21 14 chrX 76591173 76591598 -86008332 + MSTA LTR MaLR 1 428 0 8369 175 53 4 chrX 76591598 76593172 -86006758 + MSTA-int LTR MaLR 1 1651 0 2215 171 22 7 chrX 76593178 76593594 -86006336 + MSTA LTR MaLR 7 428 0 367 274 15 37 chrX 76595874 76596009 -86003921 - MIR SINE MIR -24 238 107 708 289 69 0 chrX 76596249 76596453 -86003477 + MIR SINE MIR 15 232 -30 2148 103 0 0 chrX 76596679 76597003 -86002927 - AluY SINE Alu 0 324 1 6940 64 56 1 chrX 76597087 76598740 -86001190 - L1PA7 LINE L1 0 6154 4447 727 247 34 4 chrX 76598744 76598983 -86000947 + L1M4 LINE L1 3757 4002 -2642 * 10995 231 18 28 chrX 76598980 76600168 -85999762 + L1P3 LINE L1 710 1908 -4553 1247 119 5 15 chrX 76600168 76600370 -85999560 + L1PA3 LINE L1 5956 6155 0 10995 231 18 28 chrX 76600370 76602522 -85997408 + L1P3 LINE L1 1908 4010 -2451 2807 175 18 30 chrX 76602637 76602979 -85996951 + L1MA6 LINE L1 4984 5329 -971 2454 75 0 0 chrX 76602979 76603284 -85996646 + AluY SINE Alu 1 305 -6 2807 175 18 30 chrX 76603284 76603777 -85996153 + L1MA6 LINE L1 5329 5819 -481 1479 214 12 9 chrX 76603780 76604121 -85995809 + L1MA6 LINE L1 5949 6290 -10 182 272 25 25 chrX 76604142 76604223 -85995707 - MIR SINE MIR -70 138 58 21 0 0 0 chrX 76604387 76604408 -85995522 + AT_rich Low_complexity Low_complexity 1 21 0 5386 73 3 1 chrX 76604559 76605299 -85994631 - L1PA8A LINE L1 -27 6104 5364 1740 109 31 0 chrX 76605297 76605591 -85994339 + L1PA8A LINE L1 5056 5358 -788 * 1347 212 22 9 chrX 76605587 76605903 -85994027 - L1MB5 LINE L1 -32 6142 5823 * 1374 219 19 49 chrX 76606420 76606789 -85993141 - MLT1A1 LTR MaLR -4 361 4 735 154 7 0 chrX 76608233 76608376 -85991554 + L1MC/D LINE L1 5322 5465 -879 415 241 43 102 chrX 76608488 76608861 -85991069 - L1M4b LINE L1 -4685 2453 2103 2053 111 45 0 chrX 76608864 76609153 -85990777 - AluSg SINE Alu -8 302 1 4964 91 8 1 chrX 76609153 76609901 -85990029 - L1P LINE L1 -1239 4907 4155 3553 87 2 0 chrX 76609900 76610407 -85989523 + L1P LINE L1 3644 4151 -1995 * 322 252 159 26 chrX 76610400 76610954 -85988976 - L1M4b LINE L1 -4951 1904 1335 * 239 274 0 0 chrX 76611049 76611111 -85988819 + MER77 LTR ERV1 1 62 -543 1452 246 65 15 chrX 76611274 76611672 -85988258 + MER68 LTR ERV1 145 562 0 2491 53 0 3 chrX 76611728 76612028 -85987902 - AluY SINE Alu -12 299 1 773 316 9 9 chrX 76612258 76612575 -85987355 + MLT1-int LTR MaLR 285 601 -770 468 176 0 11 chrX 76612863 76612954 -85986976 + MLT1F1 LTR MaLR 476 565 -2 216 0 0 0 chrX 76613331 76613355 -85986575 + (TA)n Simple_repeat Simple_repeat 2 25 0 1348 171 46 41 chrX 76613778 76614147 -85985783 - L1MA7 LINE L1 0 6291 5921 2359 200 79 37 chrX 76614324 76615170 -85984760 - L1M4 LINE L1 -701 5473 4590 373 66 33 0 chrX 76616254 76616315 -85983615 + (GA)n Simple_repeat Simple_repeat 1 63 0 207 286 127 0 chrX 76616726 76616789 -85983141 + L2 LINE L2 3184 3254 -18 222 337 173 12 chrX 76616813 76617068 -85982862 + L2 LINE L2 1992 2287 -1027 370 333 48 6 chrX 76617176 76617344 -85982586 + MIR SINE MIR 20 194 -68 213 241 150 38 chrX 76617399 76617532 -85982398 + L2 LINE L2 2359 2506 -808 1386 199 72 0 chrX 76617908 76618184 -85981746 + AluJo SINE Alu 1 296 -16 534 217 116 8 chrX 76618192 76618321 -85981609 + MIR SINE MIR 29 171 -91 419 165 101 0 chrX 76619521 76619600 -85980330 - MER81 DNA DNA -27 87 1 360 232 12 24 chrX 76625199 76625281 -85974649 + MER5B DNA MER1_type 6 86 -92 505 250 52 27 chrX 76627534 76627845 -85972085 - L1ME LINE L1 -636 5528 5201 230 56 28 0 chrX 76627961 76627997 -85971933 + (TAA)n Simple_repeat Simple_repeat 2 38 0 531 296 19 0 chrX 76629176 76629335 -85970595 + MIR SINE MIR 94 255 -7 2028 82 0 4 chrX 76629418 76629685 -85970245 - AluY SINE Alu -2 309 44 435 308 83 35 chrX 76630037 76630261 -85969669 + MIR SINE MIR 24 262 0 228 250 54 0 chrX 76630619 76630675 -85969255 - L2 LINE L2 -4 3268 3210 378 0 0 0 chrX 76631845 76631887 -85968043 + (CA)n Simple_repeat Simple_repeat 2 43 0 766 260 150 104 chrX 76633511 76634556 -85965374 + MER52A LTR ERV1 663 1755 0 1159 312 56 7 chrX 76634616 76635045 -85964885 + LTR33 LTR ERVL 1 450 -71 1209 266 97 31 chrX 76636050 76637073 -85962857 + L1M4 LINE L1 1342 2400 -4559 542 180 33 8 chrX 76637155 76637277 -85962653 - MLT1A1 LTR MaLR -15 350 226 739 169 5 25 chrX 76637292 76637480 -85962450 + MSTD LTR MaLR 15 194 -171 2734 258 66 47 chrX 76637501 76637970 -85961960 + L1M4 LINE L1 4471 4930 -2027 253 125 36 0 chrX 76637970 76638026 -85961904 + GA-rich Low_complexity Low_complexity 1 58 0 2734 258 66 47 chrX 76638026 76638795 -85961135 + L1M4 LINE L1 4930 5798 -1159 1290 244 101 19 chrX 76638795 76638986 -85960944 + MLT1D LTR MaLR 1 175 -330 381 22 0 0 chrX 76638986 76639032 -85960898 + (TG)n Simple_repeat Simple_repeat 2 47 0 1290 244 101 19 chrX 76639032 76639307 -85960623 + MLT1D LTR MaLR 175 505 0 2734 258 66 47 chrX 76639307 76639507 -85960423 + L1M4 LINE L1 5798 5993 -964 1201 240 49 7 chrX 76639516 76639961 -85959969 + L1M4c LINE L1 1001 1464 -4920 1028 217 12 4 chrX 76640062 76640302 -85959628 - L1 LINE L1 -1280 4866 4625 1017 321 53 6 chrX 76640310 76640777 -85959153 + L1PA12 LINE L1 9 497 -7084 247 311 77 70 chrX 76641332 76641605 -85958325 + L1M2 LINE L1 793 1067 -5782 1438 233 49 15 chrX 76641889 76642376 -85957554 + L1PA12 LINE L1 1849 2444 -5140 240 146 0 0 chrX 76642493 76642534 -85957396 - LTR30 LTR ERV1 -135 587 547 1678 61 9 153 chrX 76642534 76642860 -85957070 - LTR12 LTR ERV1 -435 279 1 6577 115 14 22 chrX 76642861 76643444 -85956486 - MER4E-int LTR ERV1 -5435 1323 752 2728 126 98 94 chrX 76643444 76644105 -85955825 - MER4A LTR ERV1 0 664 1 6577 115 14 22 chrX 76644105 76644616 -85955314 - MER4E-int LTR ERV1 -6006 752 238 1555 147 64 4 chrX 76644662 76644928 -85955002 - MER4E-int LTR ERV1 -6476 282 1 2094 148 42 5 chrX 76644928 76645306 -85954624 - MER4E LTR ERV1 0 779 388 234 149 21 0 chrX 76645410 76645457 -85954473 + L1 LINE L1 2943 2990 -3156 4471 165 19 23 chrX 76645460 76646555 -85953375 + L1PA16 LINE L1 5068 6155 -11 420 236 36 0 chrX 76646577 76646687 -85953243 + L1M4c LINE L1 1533 1646 -4738 37162 58 2 17 chrX 76646712 76651840 -85948090 + L1P LINE L1 14 5064 -1082 8231 223 29 46 chrX 76651963 76654032 -85945898 + L1 LINE L1 2572 4675 -1707 2377 89 0 0 chrX 76654032 76654323 -85945607 - AluSc SINE Alu -18 291 1 8231 223 29 46 chrX 76654323 76654393 -85945537 + L1 LINE L1 4675 4745 -1637 246 81 0 0 chrX 76654393 76654430 -85945500 + (CA)n Simple_repeat Simple_repeat 1 37 0 8231 223 29 46 chrX 76654430 76655197 -85944733 + L1 LINE L1 4745 5429 -953 3330 234 100 8 chrX 76655445 76656635 -85943295 - L1M2 LINE L1 -4171 2678 1379 1273 323 41 32 chrX 76656886 76657540 -85942390 - L1M2 LINE L1 -6123 726 67 716 274 86 19 chrX 76657742 76658056 -85941874 + L1ME LINE L1 5488 5822 -299 656 300 70 26 chrX 76658136 76658366 -85941564 + MIR SINE MIR 2 241 -21 209 211 21 63 chrX 76659027 76659122 -85940808 + GA-rich Low_complexity Low_complexity 4 94 0 247 274 48 65 chrX 76659660 76659784 -85940146 + MIR SINE MIR 122 243 -19 232 231 44 0 chrX 76661150 76661241 -85938689 + L1ME1 LINE L1 4412 4506 -1640 702 240 106 0 chrX 76661393 76661668 -85938262 + L1ME1 LINE L1 4755 5058 -1088 * 24461 126 8 33 chrX 76661665 76666619 -85933311 - L1PA7 LINE L1 -1081 5380 554 6926 56 6 0 chrX 76666619 76667749 -85932181 + L1PA7 LINE L1 5358 6469 0 2168 246 62 47 chrX 76667762 76668847 -85931083 + L1ME1 LINE L1 5030 6122 -44 478 217 33 33 chrX 76668748 76668900 -85931030 + L1MA10 LINE L1 6182 6333 -1 * 753 289 36 0 chrX 76669008 76669233 -85930697 + MIR SINE MIR 4 236 -26 495 210 37 2 chrX 76669338 76669473 -85930457 - L1MA9 LINE L1 -281 5875 5736 * 1480 177 47 44 chrX 76669468 76669875 -85930055 + L1MA9 LINE L1 5871 6278 -34 726 287 55 38 chrX 76669883 76670120 -85929810 + MIR SINE MIR 20 260 -2 864 269 112 3 chrX 76670151 76670500 -85929430 + Charlie2b DNA MER1_type 881 1267 -1515 748 20 0 0 chrX 76670626 76670724 -85929206 - L1PA4 LINE L1 -138 6017 5920 1553 258 67 79 chrX 76670943 76671902 -85928028 + L1M4b LINE L1 17 1022 -5837 1073 189 49 12 chrX 76671899 76672142 -85927788 + L1PA16 LINE L1 5899 6150 -16 * 248 292 146 0 chrX 76672175 76672305 -85927625 + L1M4b LINE L1 1013 1161 -5698 244 159 0 0 chrX 76672397 76672441 -85927489 + L1M4b LINE L1 1879 1922 -5037 971 272 73 22 chrX 76672447 76673000 -85926930 - MER76 LTR ERV -44 644 1 244 284 27 0 chrX 76673223 76673297 -85926633 + L2 LINE L2 2680 2755 -559 248 208 0 0 chrX 76673569 76673617 -85926313 + C-rich Low_complexity Low_complexity 3 50 0 510 17 0 0 chrX 76673717 76673776 -85926154 + (TG)n Simple_repeat Simple_repeat 2 60 0 259 229 131 49 chrX 76674635 76674757 -85925173 + MIR SINE MIR 21 152 -110 201 236 214 0 chrX 76674880 76674969 -85924961 + MIR SINE MIR 38 145 -63 183 289 111 22 chrX 76675463 76675553 -85924377 - MIR SINE MIR -69 139 42 1167 132 10 0 chrX 76675678 76675875 -85924055 - L1P5 LINE L1 -483 5673 5475 6863 51 10 1 chrX 76675890 76677437 -85922493 - L1PA7 LINE L1 -3 6151 4588 5307 82 91 0 chrX 76677445 76678252 -85921678 + L1PA7 LINE L1 3739 4618 -1528 363 89 0 0 chrX 76678243 76678299 -85921631 - L1P5 LINE L1 -682 5484 5429 * 805 298 43 38 chrX 76678301 76678719 -85921211 + L2 LINE L2 2756 3313 0 181 353 96 7 chrX 76678766 76678902 -85921028 - L2 LINE L2 -6 3307 3160 2290 188 24 9 chrX 76678994 76679414 -85920516 + MSTB LTR MaLR 1 426 0 2719 116 3 0 chrX 76680593 76680965 -85918965 + THE1C LTR MaLR 3 375 0 1105 162 4 75 chrX 76681068 76681321 -85918609 + MER46A DNA MER2_type 2 236 0 193 364 0 0 chrX 76681380 76681435 -85918495 - L2 LINE L2 -14 3258 3204 570 297 168 0 chrX 76681447 76681649 -85918281 + MIR SINE MIR 4 239 -23 906 120 99 151 chrX 76681877 76682169 -85917761 + LTR12 LTR ERV1 1 277 -437 361 222 10 0 chrX 76682169 76682268 -85917662 + LTR30 LTR ERV1 544 643 -79 650 129 0 0 chrX 76682269 76682370 -85917560 + LTR12 LTR ERV1 481 581 -133 308 318 114 41 chrX 76682471 76682716 -85917214 - L2 LINE L2 -554 2760 2498 2198 99 95 113 chrX 76683023 76683518 -85916412 - THE1C-int LTR MaLR -1094 486 1 2169 157 11 13 chrX 76683518 76683894 -85916036 - THE1C LTR MaLR 0 375 1 2638 102 5 11 chrX 76683936 76684310 -85915620 - THE1C LTR MaLR -1 374 3 33 56 0 0 chrX 76684728 76684782 -85915148 + AT_rich Low_complexity Low_complexity 1 54 0 286 292 83 21 chrX 76684922 76685018 -85914912 - L2 LINE L2 -528 2786 2685 269 298 156 28 chrX 76685431 76685572 -85914358 + MIR3 SINE MIR 30 188 -20 892 197 5 10 chrX 76685707 76685900 -85914030 + MLT2D LTR ERVL 1 192 -222 782 241 6 0 chrX 76686003 76686169 -85913761 + MLT2D LTR ERVL 193 359 -55 2805 118 5 0 chrX 76686171 76686587 -85913343 + L1P3 LINE L1 870 1287 -5174 614 13 0 0 chrX 76686584 76686663 -85913267 + L1HS LINE L1 6077 6155 0 * 22919 121 10 22 chrX 76686675 76690857 -85909073 + L1P3 LINE L1 1257 5380 -1081 961 221 137 46 chrX 76690855 76691651 -85908279 - L1M4 LINE L1 -1089 5293 4376 * 6697 66 8 10 chrX 76691654 76693032 -85906898 + L1PA7 LINE L1 4773 6150 -4 280 143 0 86 chrX 76693041 76693066 -85906864 + MLT2C2 LTR ERVL 401 427 -37 336 24 0 0 chrX 76693066 76693107 -85906823 + (CA)n Simple_repeat Simple_repeat 1 41 0 280 143 0 86 chrX 76693107 76693151 -85906779 + MLT2C2 LTR ERVL 427 464 0 388 287 96 24 chrX 76694219 76694512 -85905418 - L1M4 LINE L1 -4128 2256 1943 338 205 19 112 chrX 76694545 76694664 -85905266 - L1M4 LINE L1 -4576 1808 1706 1954 179 66 15 chrX 76694664 76695071 -85904859 - MSTA LTR MaLR 0 428 1 338 205 19 112 chrX 76695071 76695112 -85904818 - L1M4 LINE L1 -4678 1706 1663 7399 36 0 3 chrX 76695112 76696212 -85903718 - L1PA4 LINE L1 -3 6152 5055 2844 146 5 0 chrX 76696313 76696757 -85903173 + L1PA11 LINE L1 3749 4194 -1952 827 31 0 0 chrX 76696751 76696893 -85903037 + L1PA8 LINE L1 6052 6193 0 * 6290 174 16 12 chrX 76696922 76698902 -85901028 + L1PA11 LINE L1 4179 6169 -5 6900 201 55 22 chrX 76698910 76700100 -85899830 + L1MA3 LINE L1 3496 4792 -1513 198 0 0 0 chrX 76700100 76700122 -85899808 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 6900 201 55 22 chrX 76700122 76701088 -85898842 + L1MA3 LINE L1 4792 5725 -580 378 61 0 0 chrX 76701089 76701138 -85898792 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1171 123 17 0 chrX 76701138 76701317 -85898613 - L1PA14 LINE L1 -7 6154 5973 6512 192 22 14 chrX 76701349 76702638 -85897292 + L1MA1 LINE L1 1302 2600 -4965 10894 215 20 11 chrX 76702650 76706489 -85893441 + L1MA1 LINE L1 3861 7738 0 2530 137 11 120 chrX 76706489 76707104 -85892826 + L1MA3 LINE L1 5716 6263 -42 303 165 177 0 chrX 76707104 76707183 -85892747 + L1MA3 LINE L1 6213 6305 0 225 94 0 0 chrX 76707723 76707755 -85892175 + (A)n Simple_repeat Simple_repeat 1 32 0 384 188 25 0 chrX 76707824 76707904 -85892026 - Tigger5 DNA MER2_type 0 2323 2242 361 205 0 26 chrX 76707897 76707975 -85891955 + Tigger5 DNA MER2_type 2245 2320 -3 * 375 266 0 0 chrX 76707975 76708053 -85891877 - Tigger5 DNA MER2_type -2245 78 1 12535 188 30 19 chrX 76709029 76709053 -85890877 - L1MA3 LINE L1 0 7724 7702 230 0 33 0 chrX 76709053 76709083 -85890847 + (TA)n Simple_repeat Simple_repeat 2 32 0 12535 188 30 19 chrX 76709083 76711348 -85888582 - L1MA3 LINE L1 -22 7702 5462 2328 114 3 0 chrX 76711348 76711691 -85888239 - L1PA13 LINE L1 -3 6160 5817 12535 188 30 19 chrX 76711691 76712601 -85887329 - L1MA3 LINE L1 -2262 5462 4563 2037 109 0 14 chrX 76712601 76712886 -85887044 - AluSq SINE Alu -30 283 3 12535 188 30 19 chrX 76712886 76716087 -85883843 - L1MA3 LINE L1 -3161 4563 1250 1635 159 68 88 chrX 76716087 76716452 -85883478 - THE1B LTR MaLR -6 358 1 10652 114 17 0 chrX 76716452 76718006 -85881924 - THE1B-int LTR MaLR 0 1580 1 1516 167 54 79 chrX 76718006 76718323 -85881607 - THE1B LTR MaLR 0 364 56 758 201 96 5 chrX 76718949 76719158 -85880772 - L1MC4 LINE L1 -379 7663 7436 3738 138 12 99 chrX 76719159 76719905 -85880025 + LTR8 LTR ERV1 3 683 -8 707 239 60 5 chrX 76719914 76720098 -85879832 - L1MC4a LINE L1 -447 7361 7168 2462 259 82 13 chrX 76720141 76720813 -85879117 + MER21B LTR ERV1 22 739 -124 2943 134 42 64 chrX 76720890 76721502 -85878428 - MER4A LTR ERV1 -1 599 1 254 167 17 17 chrX 76721542 76721602 -85878328 - L1MC4 LINE L1 -790 7252 7193 13314 130 20 7 chrX 76721606 76722361 -85877569 - HUERS-P3 LTR ERV1 -4944 3975 3231 378 108 0 0 chrX 76722361 76722426 -85877504 + (TA)n Simple_repeat Simple_repeat 2 66 0 13314 130 20 7 chrX 76722426 76723664 -85876266 - HUERS-P3 LTR ERV1 -5688 3231 1956 4265 216 45 16 chrX 76723680 76725301 -85874629 - HUERS-P3 LTR ERV1 -5671 1747 17 1445 235 46 99 chrX 76725315 76725961 -85873969 - LTR9 LTR ERV1 0 612 1 2319 190 0 0 chrX 76725961 76726350 -85873580 - L1PA12 LINE L1 -7192 389 1 337 231 15 118 chrX 76726353 76726548 -85873382 + L1MC4 LINE L1 7868 8042 0 23 33 0 0 chrX 76727754 76727784 -85872146 + AT_rich Low_complexity Low_complexity 1 30 0 336 317 25 8 chrX 76728949 76729069 -85870861 + MIR SINE MIR 47 168 -94 189 107 0 0 chrX 76729291 76729319 -85870611 + (TG)n Simple_repeat Simple_repeat 2 29 0 1871 184 9 0 chrX 76729359 76729701 -85870229 - MER7A DNA MER2_type -1 345 3 2056 236 13 42 chrX 76729712 76730234 -85869696 - MLT2B3 LTR ERVL -47 507 1 18173 191 20 9 chrX 76730234 76733984 -85865946 - ERVL LTR ERVL -7 5757 1875 6469 256 34 8 chrX 76733982 76735666 -85864264 - ERVL LTR ERVL -3960 1733 1 * 748 226 24 18 chrX 76735666 76735710 -85864220 - ERVL LTR ERVL 0 554 512 318 26 0 0 chrX 76735710 76735749 -85864181 + (CA)n Simple_repeat Simple_repeat 2 40 0 748 226 24 18 chrX 76735749 76735868 -85864062 - ERVL LTR ERVL -42 512 390 696 151 75 14 chrX 76735868 76736014 -85863916 + LTR23 LTR ERV1 1 155 -282 * 702 146 4 4 chrX 76736011 76736170 -85863760 + LTR56 LTR ERV1 305 465 -2 946 200 27 47 chrX 76736188 76736566 -85863364 + LTR56-int LTR ERV1 17 522 -4601 886 224 66 15 chrX 76736685 76736944 -85862986 + LTR56-int LTR ERV1 1470 1741 -3382 734 176 7 7 chrX 76736954 76737087 -85862843 - MER4E LTR ERV1 -7 759 627 1551 164 3 67 chrX 76737087 76737399 -85862531 - MER4A LTR ERV1 0 664 373 619 140 0 10 chrX 76737441 76737541 -85862389 - MER4A LTR ERV1 -565 99 1 15424 118 46 17 chrX 76737547 76740179 -85859751 - MER4A-int LTR ERV1 -2 6596 3888 3151 138 99 16 chrX 76740257 76740995 -85858935 - MER4A-int LTR ERV1 -3063 3535 2737 1345 119 132 0 chrX 76740995 76741222 -85858708 + LTR8 LTR ERV1 1 257 -434 6016 116 84 55 chrX 76741223 76742990 -85856940 - MER4A-int LTR ERV1 -3366 1649 318 442 0 0 33 chrX 76742990 76743050 -85856880 + (TAAAA)n Simple_repeat Simple_repeat 4 61 0 6016 116 84 55 chrX 76743050 76743335 -85856595 - MER4A-int LTR ERV1 -4697 318 43 927 134 4 105 chrX 76743335 76743589 -85856341 - MER4A LTR ERV1 -116 548 262 443 180 0 11 chrX 76743591 76743680 -85856250 - MER4A LTR ERV1 -567 97 10 6211 152 20 37 chrX 76743685 76744880 -85855050 - MER4B-int LTR ERV1 -3473 2113 252 1645 175 7 11 chrX 76744930 76745216 -85854714 - MER4B-int LTR ERV1 -6473 285 1 3177 126 2 74 chrX 76745218 76745865 -85854065 - MER4B LTR ERV1 -2 777 1 4272 206 56 51 chrX 76745867 76747246 -85852684 + LTR23-int LTR ERV1 1743 3114 -3066 2146 116 0 3 chrX 76747246 76747540 -85852390 + AluSc SINE Alu 2 294 -15 4272 206 56 51 chrX 76747540 76748280 -85851650 + LTR23-int LTR ERV1 3114 5136 -1044 1792 236 102 76 chrX 76748383 76749109 -85850821 - LTR1B LTR ERV1 -81 745 1 3307 186 18 13 chrX 76749111 76749583 -85850347 + LTR23-int LTR ERV1 4427 4577 -546 512 138 0 0 chrX 76749583 76749663 -85850267 - MADE1 DNA Mariner 0 80 1 3307 186 18 13 chrX 76749663 76750213 -85849717 + LTR23-int LTR ERV1 4577 5123 0 1595 154 52 10 chrX 76750214 76750519 -85849411 + LTR23 LTR ERV1 1 318 -119 314 226 0 0 chrX 76750527 76750611 -85849319 + LTR24 LTR ERV1 384 467 0 1850 227 37 3 chrX 76750617 76750991 -85848939 - MLT2B3 LTR ERVL -167 387 1 461 289 37 30 chrX 76750991 76751126 -85848804 + MER5B DNA MER1_type 41 176 -2 3196 198 25 28 chrX 76751533 76751959 -85847971 - L1MC1 LINE L1 0 6333 5907 2183 114 10 7 chrX 76751959 76752267 -85847663 - AluSx SINE Alu -3 309 1 3196 198 25 28 chrX 76752267 76752391 -85847539 - L1MC1 LINE L1 -426 5907 5784 1983 141 0 0 chrX 76752391 76752713 -85847217 - AluSx SINE Alu 0 322 1 3196 198 25 28 chrX 76752713 76752881 -85847049 - L1MC1 LINE L1 -549 5784 5615 1540 197 58 50 chrX 76752881 76753036 -85846894 + MLT1A1 LTR MaLR 1 153 -212 1445 184 26 7 chrX 76753036 76753340 -85846590 + L1MA4A LINE L1 5988 6297 -6 1540 197 58 50 chrX 76753340 76753544 -85846386 + MLT1A1 LTR MaLR 153 363 -2 1714 218 39 0 chrX 76753544 76754067 -85845863 - L1MC1 LINE L1 -714 5619 5068 1154 47 35 6 chrX 76754075 76754247 -85845683 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 560 154 10 0 chrX 76754247 76754351 -85845579 + CT-rich Low_complexity Low_complexity 2 106 0 815 129 0 0 chrX 76754357 76754473 -85845457 - AluY SINE Alu -39 272 157 405 211 0 0 chrX 76754479 76754574 -85845356 - LTR23-int LTR ERV1 -3030 2093 1999 803 176 0 0 chrX 76754576 76754701 -85845229 - AluSq/x SINE Alu -187 126 2 660 229 15 20 chrX 76754703 76754904 -85845026 - L1MC1 LINE L1 -1083 5063 4864 2077 194 55 8 chrX 76754938 76755413 -85844517 - L1MA9 LINE L1 0 7272 6776 4764 199 23 17 chrX 76755429 76755584 -85844346 - L1MA9 LINE L1 -647 6625 6472 4872 157 30 3 chrX 76755584 76756598 -85843332 + L1PA16 LINE L1 5128 6165 -1 4764 199 23 17 chrX 76756598 76757850 -85842080 - L1MA9 LINE L1 -800 6472 5205 356 0 23 0 chrX 76757853 76757897 -85842033 + (TA)n Simple_repeat Simple_repeat 2 46 0 10042 213 44 39 chrX 76757937 76761132 -85838798 - L1P3 LINE L1 -3156 3305 7 2513 266 65 41 chrX 76761141 76761966 -85837964 - L1MA9 LINE L1 -2957 4149 3345 1834 210 70 8 chrX 76761966 76762366 -85837564 + MSTB LTR MaLR 2 426 0 2513 266 65 41 chrX 76762366 76762500 -85837430 - L1MA9 LINE L1 -3761 3345 3216 1883 203 68 2 chrX 76762500 76762900 -85837030 + MSTB LTR MaLR 1 426 0 2513 266 65 41 chrX 76762900 76763312 -85836618 - L1MA9 LINE L1 -3890 3216 2815 2079 127 0 13 chrX 76763312 76763611 -85836319 - AluSx SINE Alu -17 295 1 2513 266 65 41 chrX 76763611 76765276 -85834654 - L1MA9 LINE L1 -4291 2815 1439 1370 232 10 7 chrX 76765284 76765581 -85834349 - L1MA9 LINE L1 -6732 298 1 2484 57 23 0 chrX 76765816 76766117 -85833813 + AluY SINE Alu 3 310 -1 704 256 39 34 chrX 76766139 76766346 -85833584 + MLT1H LTR MaLR 7 214 -335 415 249 69 81 chrX 76766444 76766617 -85833313 + MLT1H LTR MaLR 377 547 -2 226 348 37 30 chrX 76767615 76767750 -85832180 - L2 LINE L2 -6 3307 3172 2346 99 0 0 chrX 76768092 76768396 -85831534 + AluSg SINE Alu 3 306 -4 1681 192 4 0 chrX 76768511 76768787 -85831143 - AluJo SINE Alu -35 277 1 21 36 0 0 chrX 76770168 76770196 -85829734 + AT_rich Low_complexity Low_complexity 1 28 0 2484 83 0 3 chrX 76770435 76770747 -85829183 - AluY SINE Alu 0 311 1 327 351 29 32 chrX 76770877 76771121 -85828809 - MIR SINE MIR -4 258 16 495 181 16 8 chrX 76772306 76772433 -85827497 + (TA)n Simple_repeat Simple_repeat 1 128 0 1512 116 18 197 chrX 76772677 76773037 -85826893 + THE1C LTR MaLR 1 263 -112 2051 88 3 69 chrX 76773037 76773342 -85826588 + AluSg SINE Alu 1 285 -25 1512 116 18 197 chrX 76773342 76773438 -85826492 + THE1C LTR MaLR 263 375 0 2496 162 12 2 chrX 76773438 76773864 -85826066 + THE1C-int LTR MaLR 1 430 -1150 190 256 56 104 chrX 76775149 76775274 -85824656 + MIR3 SINE MIR 75 193 -15 22 56 0 0 chrX 76776294 76776330 -85823600 + AT_rich Low_complexity Low_complexity 1 36 0 247 313 0 0 chrX 76776493 76776560 -85823370 - MIR SINE MIR -7 255 189 25 0 0 0 chrX 76777244 76777269 -85822661 + AT_rich Low_complexity Low_complexity 1 25 0 282 29 0 0 chrX 76777384 76777419 -85822511 + (TG)n Simple_repeat Simple_repeat 1 35 0 185 305 84 32 chrX 76780174 76780269 -85819661 - L2 LINE L2 0 3272 3173 226 346 13 13 chrX 76780868 76780946 -85818984 + MIR3 SINE MIR 2 79 -129 360 0 0 0 chrX 76783657 76783697 -85816233 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1725 133 28 45 chrX 76783699 76783861 -85816069 - AluSx SINE Alu -31 281 125 372 59 0 0 chrX 76783861 76783912 -85816018 + (TG)n Simple_repeat Simple_repeat 2 52 0 1725 133 28 45 chrX 76783912 76784035 -85815895 - AluSx SINE Alu -187 125 1 249 33 0 0 chrX 76786561 76786591 -85813339 + (CAA)n Simple_repeat Simple_repeat 1 30 0 420 20 0 0 chrX 76787271 76787320 -85812610 + (TA)n Simple_repeat Simple_repeat 2 50 0 7533 31 4 0 chrX 76787320 76788314 -85811616 - L1PA5 LINE L1 -8 6146 5150 4236 64 7 17 chrX 76788311 76788903 -85811027 + L1P LINE L1 3506 4091 -2055 2015 130 0 3 chrX 76790293 76790611 -85809319 - AluSg SINE Alu 0 310 1 249 139 0 0 chrX 76791524 76791560 -85808370 - MER53 DNA DNA -152 37 2 554 356 14 5 chrX 76791581 76791800 -85808130 + MIR SINE MIR 2 222 -40 1828 201 2 44 chrX 76792228 76792635 -85807295 - MLT1B LTR MaLR 0 390 1 3134 170 37 107 chrX 76792904 76793744 -85806186 - L1MC2 LINE L1 -13 6331 5546 248 350 29 50 chrX 76794083 76794223 -85805707 - MIR3 SINE MIR -58 150 14 21 36 0 0 chrX 76794832 76794860 -85805070 + AT_rich Low_complexity Low_complexity 1 28 0 2251 101 7 0 chrX 76795261 76795637 -85804293 + AluSc SINE Alu 1 378 0 436 296 116 11 chrX 76795915 76796137 -85803793 + MIR SINE MIR 3 245 -17 187 222 0 0 chrX 76799162 76799207 -85800723 - MIR SINE MIR -56 206 162 205 292 0 0 chrX 76799234 76799282 -85800648 - L2 LINE L2 -15 3257 3210 274 287 0 69 chrX 76799324 76799425 -85800505 - MIR3 SINE MIR -38 170 77 215 186 0 17 chrX 76800227 76800286 -85799644 + GA-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chrX 76800451 76800472 -85799458 + AT_rich Low_complexity Low_complexity 1 21 0 748 236 112 37 chrX 76800472 76800685 -85799245 - MIR SINE MIR 0 262 27 1300 171 109 67 chrX 76800685 76801117 -85798813 + LTR7 LTR ERV1 1 450 0 748 236 112 37 chrX 76801117 76801145 -85798785 - MIR SINE MIR -235 27 3 180 152 0 0 chrX 76801478 76801511 -85798419 + (CA)n Simple_repeat Simple_repeat 2 34 0 297 51 0 0 chrX 76801565 76801604 -85798326 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 320 298 70 38 chrX 76801605 76801763 -85798167 + L3 LINE CR1 907 1069 -508 405 327 6 30 chrX 76801905 76802073 -85797857 + L3 LINE CR1 1360 1523 -54 187 326 35 12 chrX 76802673 76802759 -85797171 + L3b LINE CR1 1421 1508 -75 322 254 27 77 chrX 76802771 76802952 -85796978 - MIR SINE MIR -47 215 43 608 299 29 18 chrX 76802997 76803249 -85796681 - MIR SINE MIR -6 256 6 213 196 0 0 chrX 76803669 76803715 -85796215 + (TA)n Simple_repeat Simple_repeat 1 46 0 624 295 31 9 chrX 76803791 76804015 -85795915 - L1MC/D LINE L1 -2164 5644 5416 367 222 0 25 chrX 76804015 76804096 -85795834 + Tigger7 DNA MER2_type 2 80 -653 * 927 172 258 0 chrX 76804088 76804309 -85795621 - Tigger7 DNA MER2_type -2134 353 76 * 1236 138 117 0 chrX 76804307 76804547 -85795383 + Tigger7 DNA MER2_type 2243 2510 -77 2566 61 32 6 chrX 76804547 76804890 -85795040 - MER4E LTR ERV1 0 766 415 918 100 13 11 chrX 76804879 76805020 -85794910 - MER4E LTR ERV1 -388 395 1 * 6571 124 106 132 chrX 76805176 76806940 -85792990 - pTR5 LTR ERV1 0 2438 606 2286 97 3 3 chrX 76807536 76807835 -85792095 - AluSx SINE Alu -13 299 1 1545 160 21 7 chrX 76807926 76808207 -85791723 - MER4E-int LTR ERV1 -113 6645 6361 1829 121 4 0 chrX 76808219 76808467 -85791463 + AluSp SINE Alu 1 249 -64 819 150 15 3 chrX 76808469 76808876 -85791054 + (TA)n Simple_repeat Simple_repeat 1 412 0 7713 149 64 16 chrX 76808882 76809521 -85790409 - MER4E-int LTR ERV1 -441 6317 5710 1899 123 0 8 chrX 76809521 76809789 -85790141 + AluSx SINE Alu 38 303 -9 7713 149 64 16 chrX 76809789 76810854 -85789076 - MER4E-int LTR ERV1 -1048 5710 4441 3417 168 25 51 chrX 76810841 76811507 -85788423 - MER4E-int LTR ERV1 -2681 4077 3429 * 7381 132 73 42 chrX 76811510 76813127 -85786803 - MER4E-int LTR ERV1 -3675 3083 1518 2337 97 3 0 chrX 76813127 76813435 -85786495 + AluSg SINE Alu 2 310 0 7381 132 73 42 chrX 76813435 76813487 -85786443 - MER4E-int LTR ERV1 -5240 1518 1469 4010 42 21 0 chrX 76813487 76813967 -85785963 + LTR2B LTR ERV1 1 490 0 7381 132 73 42 chrX 76813967 76814073 -85785857 - MER4E-int LTR ERV1 -5289 1469 1763 2080 135 3 0 chrX 76814073 76814385 -85785545 + AluSp SINE Alu 1 313 0 7381 132 73 42 chrX 76814385 76814717 -85785213 - MER4E-int LTR ERV1 -4994 1764 1444 1109 146 103 2 chrX 76814714 76815040 -85784890 - MER4E-int LTR ERV1 -5576 1182 752 * 1927 104 31 7 chrX 76815041 76815329 -85784601 - MER4E-int LTR ERV1 -6463 295 1 1368 54 0 0 chrX 76815329 76815496 -85784434 - MER4E LTR ERV1 0 766 600 1770 60 36 28 chrX 76815507 76815757 -85784173 - MER4E LTR ERV1 -514 252 1 430 156 0 16 chrX 76815757 76815820 -85784110 + Tigger7 DNA MER2_type 2411 2472 -19 334 262 43 49 chrX 76815827 76815991 -85783939 - L1M LINE L1 -2391 5417 5255 307 335 60 23 chrX 76815994 76816212 -85783718 - L1M4 LINE L1 -895 5251 5026 348 312 52 35 chrX 76817401 76817574 -85782356 + MIR SINE MIR 84 259 -3 249 278 0 0 chrX 76817609 76817663 -85782267 + MIR SINE MIR 203 256 -6 410 291 8 17 chrX 76817931 76818048 -85781882 + MIR SINE MIR 11 126 -136 1493 194 5 45 chrX 76818978 76819055 -85780875 - Zaphod DNA AcHobo -207 3824 3745 2344 95 10 0 chrX 76819055 76819361 -85780569 - AluY SINE Alu -2 309 1 1493 194 5 45 chrX 76819361 76819679 -85780251 - Zaphod DNA AcHobo -286 3745 3445 2139 112 26 0 chrX 76819739 76820044 -85779886 + AluSq SINE Alu 1 313 0 450 247 89 0 chrX 76820176 76820322 -85779608 - Zaphod DNA AcHobo -598 3433 3275 189 74 0 0 chrX 76820616 76820643 -85779287 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2881 95 6 58 chrX 76820643 76820741 -85779189 - L1PA13 LINE L1 -9 6154 6053 2179 112 3 0 chrX 76820741 76821045 -85778885 - AluSg SINE Alu -5 305 1 2881 95 6 58 chrX 76821045 76821287 -85778643 - L1PA13 LINE L1 -110 6053 5844 2213 114 3 0 chrX 76821287 76821595 -85778335 - AluSp SINE Alu -4 309 1 2881 95 6 58 chrX 76821595 76821739 -85778191 - L1PA13 LINE L1 -319 5844 5694 814 241 73 22 chrX 76821741 76822445 -85777485 - Zaphod DNA AcHobo -1600 2431 1568 1857 75 0 35 chrX 76822448 76822703 -85777227 + AluY SINE Alu 35 280 -31 237 33 0 0 chrX 76822706 76822736 -85777194 + (CAA)n Simple_repeat Simple_repeat 2 31 0 606 128 0 0 chrX 76822752 76822838 -85777092 + AluS SINE Alu 1 86 -226 1834 145 14 4 chrX 76822838 76823114 -85776816 + AluSx SINE Alu 1 279 -33 216 0 0 0 chrX 76823114 76823138 -85776792 + (CAA)n Simple_repeat Simple_repeat 1 24 0 851 300 60 70 chrX 76823156 76823773 -85776157 - MLT1L LTR MaLR -4 611 1 325 333 25 0 chrX 76823900 76824020 -85775910 + MLT1L LTR MaLR 418 540 -75 1788 195 148 23 chrX 76824038 76824525 -85775405 + LTR10A LTR ERV1 1 548 -61 24 0 0 0 chrX 76825105 76825129 -85774801 + AT_rich Low_complexity Low_complexity 1 24 0 2308 93 3 10 chrX 76826753 76827064 -85772866 - AluSq SINE Alu -4 309 1 185 229 43 121 chrX 76827607 76827747 -85772183 + L2 LINE L2 2971 3099 -173 1398 86 132 0 chrX 76828779 76828999 -85770931 - L1PA8 LINE L1 -11 6161 5913 944 191 5 21 chrX 76829421 76829610 -85770320 + L1PA16 LINE L1 5980 6165 -1 24 32 0 0 chrX 76829667 76829698 -85770232 + AT_rich Low_complexity Low_complexity 1 31 0 2264 103 3 0 chrX 76830011 76830312 -85769618 - AluSp SINE Alu -10 303 2 2117 112 3 22 chrX 76830412 76830724 -85769206 + AluY SINE Alu 1 306 -5 21 36 0 0 chrX 76830869 76830897 -85769033 + AT_rich Low_complexity Low_complexity 1 28 0 197 194 0 0 chrX 76831397 76831433 -85768497 - MIR SINE MIR -71 191 156 497 273 29 7 chrX 76831603 76831750 -85768180 + MIR SINE MIR 9 152 -62 189 107 0 0 chrX 76831801 76831829 -85768101 + (TTA)n Simple_repeat Simple_repeat 1 28 0 492 281 66 98 chrX 76831849 76832123 -85767807 + L2 LINE L2 3003 3267 -5 228 86 0 0 chrX 76832482 76832517 -85767413 + (GA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chrX 76834241 76834262 -85765668 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1850 160 0 0 chrX 76834264 76834545 -85765385 - AluSx SINE Alu -31 281 1 4853 62 15 3 chrX 76834765 76835877 -85764053 - MER11A LTR ERVK 0 1266 1 22 99 0 0 chrX 76835940 76836011 -85763919 + AT_rich Low_complexity Low_complexity 1 71 0 259 204 18 35 chrX 76836080 76836193 -85763737 + CT-rich Low_complexity Low_complexity 3 113 0 37 76 0 0 chrX 76836786 76836865 -85763065 + AT_rich Low_complexity Low_complexity 1 79 0 12612 168 61 18 chrX 76837095 76837452 -85762478 - L1PB1 LINE L1 -2 6865 6525 315 0 0 0 chrX 76837452 76837487 -85762443 + (TA)n Simple_repeat Simple_repeat 1 35 0 12612 168 61 18 chrX 76837487 76842742 -85757188 - L1PB1 LINE L1 -342 6525 946 2295 120 0 0 chrX 76842742 76843043 -85756887 - AluY SINE Alu -10 301 1 12612 168 61 18 chrX 76843043 76843847 -85756083 - L1PB1 LINE L1 -5921 946 178 27 49 0 0 chrX 76843997 76844038 -85755892 + AT_rich Low_complexity Low_complexity 1 41 0 246 152 43 0 chrX 76844839 76844885 -85755045 - L2 LINE L2 -4 3309 3262 21 0 0 0 chrX 76845730 76845751 -85754179 + AT_rich Low_complexity Low_complexity 1 21 0 1305 194 18 3 chrX 76845796 76846079 -85753851 - L1MB1 LINE L1 -6 6162 5876 686 218 42 18 chrX 76846115 76846280 -85753650 - MIR SINE MIR -1 261 93 276 359 39 78 chrX 76846288 76846544 -85753386 - L2 LINE L2 -35 3237 2992 5531 122 8 5 chrX 76846791 76847678 -85752252 + L1MA1 LINE L1 5413 6302 0 255 365 33 0 chrX 76847873 76848006 -85751924 - MIR SINE MIR -66 142 21 1357 216 67 0 chrX 76848254 76848523 -85751407 + AluJo SINE Alu 5 291 -21 2671 191 93 30 chrX 76848524 76848747 -85751183 + LTR48 LTR ERV1 1 208 -579 2066 168 22 6 chrX 76848747 76849105 -85750825 - THE1B LTR MaLR 0 364 1 9043 112 88 45 chrX 76849105 76850620 -85749310 - THE1B-int LTR MaLR 0 1580 1 2291 146 22 0 chrX 76850620 76850976 -85748954 - THE1B LTR MaLR 0 364 1 2671 191 93 30 chrX 76850976 76851490 -85748440 + LTR48 LTR ERV1 207 787 0 246 81 0 0 chrX 76851606 76851643 -85748287 + (TG)n Simple_repeat Simple_repeat 2 38 0 1653 194 6 3 chrX 76851650 76851975 -85747955 + MLT2C1 LTR ERVL 24 349 -48 213 213 43 21 chrX 76851994 76852088 -85747842 + (TTATA)n Simple_repeat Simple_repeat 3 98 0 210 125 16 62 chrX 76852135 76852199 -85747731 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 1758 276 39 20 chrX 76852251 76853462 -85746468 + ERVL-C1 LTR ERVL 3 1309 -4455 1121 195 10 0 chrX 76853473 76853678 -85746252 + ERVL-C1 LTR ERVL 2368 2574 -3190 1398 263 119 15 chrX 76853678 76854149 -85745781 + MLT2B1 LTR ERVL 1 520 0 2453 240 37 35 chrX 76854150 76855179 -85744751 + ERVL-B1 LTR ERVL 2 986 -4778 2135 130 48 17 chrX 76855191 76855544 -85744386 + THE1B LTR MaLR 1 364 0 2595 73 2 104 chrX 76855544 76855996 -85743934 + THE1B-int LTR MaLR 1 406 -1174 32737 110 12 17 chrX 76856003 76862182 -85737748 + L1PA6 LINE L1 11 6154 0 7945 123 5 0 chrX 76862205 76863388 -85736542 + THE1B-int LTR MaLR 392 1580 0 2077 127 66 17 chrX 76863388 76863735 -85736195 + THE1B LTR MaLR 1 364 0 8701 203 14 6 chrX 76863748 76865467 -85734463 + ERVL-B1 LTR ERVL 1246 2978 -2786 400 122 0 40 chrX 76865467 76865541 -85734389 + MLT1A1 LTR MaLR 1 71 -294 555 162 32 45 chrX 76865568 76865722 -85734208 - L1MA8 LINE L1 0 6291 6140 2012 168 45 43 chrX 76865748 76866261 -85733669 - L1MA8 LINE L1 -28 6263 5750 7374 203 38 15 chrX 76866353 76867932 -85731998 + ERVL-B1 LTR ERVL 2975 4589 -1175 262 143 0 0 chrX 76867934 76867976 -85731954 + MLT2B2 LTR ERVL 474 515 0 4394 226 48 24 chrX 76867988 76868048 -85731882 + ERVL LTR ERVL 2585 2642 -3122 1759 192 27 55 chrX 76868048 76868449 -85731481 + MLT1B LTR MaLR 1 390 0 4394 226 48 24 chrX 76868449 76869475 -85730455 + ERVL LTR ERVL 2642 3697 -2067 1314 164 40 114 chrX 76869516 76869793 -85730137 + MLT2C1 LTR ERVL 1 244 -153 1301 196 80 18 chrX 76869793 76870068 -85729862 - AluJo SINE Alu -20 292 1 1314 164 40 114 chrX 76870068 76870167 -85729763 + MLT2C1 LTR ERVL 244 349 -48 244 106 0 64 chrX 76870465 76870512 -85729418 - MLT1J2 LTR MaLR -15 435 392 41624 45 3 2 chrX 76870528 76876667 -85723263 - L1PA3 LINE L1 -3 6152 7 248 289 114 9 chrX 76876815 76876929 -85723001 - MLT1J2 LTR MaLR -318 132 7 25 0 0 0 chrX 76877355 76877380 -85722550 + AT_rich Low_complexity Low_complexity 1 25 0 12419 110 8 8 chrX 76877579 76879600 -85720330 - L1PA7 LINE L1 -1561 4585 2565 6742 74 8 0 chrX 76879600 76881154 -85718776 + L1PA7 LINE L1 4597 6151 -3 199 284 15 15 chrX 76882600 76882667 -85717263 - MER5A DNA MER1_type -45 144 78 35 54 0 0 chrX 76882753 76882809 -85717121 + AT_rich Low_complexity Low_complexity 1 56 0 568 275 53 30 chrX 76882825 76883127 -85716803 - L1ME4a LINE L1 -90 6031 5723 2103 87 0 58 chrX 76883143 76883455 -85716475 - AluY SINE Alu -15 296 3 593 276 110 77 chrX 76884370 76884862 -85715068 - MLT1G1 LTR MaLR -5 590 43 32 0 0 0 chrX 76884896 76884928 -85715002 + AT_rich Low_complexity Low_complexity 1 32 0 305 314 7 7 chrX 76885197 76885337 -85714593 - MER103 DNA DNA -10 156 17 2158 92 0 7 chrX 76885648 76885929 -85714001 - AluY SINE Alu -21 290 12 226 279 0 0 chrX 76886357 76886418 -85713512 - LTR67 LTR ERVL -5 552 492 3188 215 18 7 chrX 76886932 76887708 -85712222 - L1MB5 LINE L1 -8 6235 5450 7460 251 72 51 chrX 76887714 76889286 -85710644 - L1MB5 LINE L1 -820 5395 3857 2216 120 0 0 chrX 76889286 76889586 -85710344 + AluSg SINE Alu 1 300 -10 7460 251 72 51 chrX 76889586 76890356 -85709574 - L1MB5 LINE L1 -2358 3857 3105 951 50 22 39 chrX 76890356 76890537 -85709393 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 7460 251 72 51 chrX 76890537 76890568 -85709362 - L1MB5 LINE L1 -3110 3105 3076 1554 148 25 0 chrX 76890568 76890805 -85709125 - AluSq SINE Alu -70 243 1 7460 251 72 51 chrX 76890805 76892160 -85707770 - L1MB5 LINE L1 -3139 3076 1620 777 183 30 0 chrX 76892160 76892324 -85707606 - L1MB3 LINE L1 -12 6171 6003 243 61 0 0 chrX 76892672 76892705 -85707225 + (A)n Simple_repeat Simple_repeat 1 33 0 1074 316 34 23 chrX 76892896 76893367 -85706563 + MLT1J LTR MaLR 36 511 0 384 224 154 42 chrX 76893956 76894099 -85705831 + MER5B DNA MER1_type 20 178 0 247 278 155 10 chrX 76894174 76894271 -85705659 - MIR3 SINE MIR -48 160 50 194 286 71 0 chrX 76894443 76894499 -85705431 + L2 LINE L2 3213 3272 0 28 29 0 0 chrX 76895840 76895875 -85704055 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chrX 76896236 76896257 -85703673 + AT_rich Low_complexity Low_complexity 1 21 0 2378 116 3 47 chrX 76896267 76896648 -85703282 + THE1B LTR MaLR 1 364 0 545 232 52 7 chrX 76897115 76897270 -85702660 + MER103 DNA DNA 3 164 -2 459 237 30 59 chrX 76897384 76897519 -85702411 + L2 LINE L2 3177 3307 -6 252 59 0 0 chrX 76897519 76897553 -85702377 + (CATA)n Simple_repeat Simple_repeat 2 35 0 486 303 144 10 chrX 76897760 76897968 -85701962 - MIR SINE MIR -16 246 11 310 175 25 0 chrX 76898610 76898690 -85701240 + (TA)n Simple_repeat Simple_repeat 2 83 0 2408 63 0 0 chrX 76899509 76899812 -85700118 - AluY SINE Alu -8 303 1 1564 206 52 38 chrX 76900438 76900880 -85699050 + L1MA4A LINE L1 2755 3206 -2940 2015 132 0 0 chrX 76900880 76901169 -85698761 - AluSx SINE Alu -21 291 3 1564 206 52 38 chrX 76901169 76901231 -85698699 + L1MA4A LINE L1 3206 3266 -2880 51 0 0 0 chrX 76901241 76901292 -85698638 + AT_rich Low_complexity Low_complexity 1 51 0 7850 189 19 32 chrX 76901292 76903500 -85696430 + L1MA4A LINE L1 3535 5708 -595 2505 118 6 3 chrX 76903500 76903863 -85696067 + THE1B LTR MaLR 1 364 0 7850 189 19 32 chrX 76903863 76904446 -85695484 + L1MA4A LINE L1 5708 6297 -6 805 158 8 8 chrX 76904572 76904705 -85695225 + LTR29 LTR ERV1 490 622 0 1371 202 37 36 chrX 76904721 76905150 -85694780 + LTR29-int LTR ERV1 19 2555 -4798 216 0 0 0 chrX 76905187 76905211 -85694719 + (A)n Simple_repeat Simple_repeat 1 24 0 963 191 21 47 chrX 76905213 76905448 -85694482 + LTR49-int LTR ERV1 355 583 -5748 712 171 118 15 chrX 76905449 76905732 -85694198 + LTR49-int LTR ERV1 768 1114 -5217 481 241 139 0 chrX 76905754 76905891 -85694039 + LTR49-int LTR ERV1 1769 1924 -2956 1061 225 86 106 chrX 76905894 76906499 -85693431 + LTR49-int LTR ERV1 1584 2185 -4146 * 1201 178 11 94 chrX 76906487 76906774 -85693156 + LTR49-int LTR ERV1 3153 3415 -4122 1188 207 75 73 chrX 76906894 76907697 -85692233 + LTR49-int LTR ERV1 1383 3612 -2651 6701 161 69 35 chrX 76907768 76909247 -85690683 + LTR49-int LTR ERV1 4799 6327 -4 1297 199 99 13 chrX 76909247 76909570 -85690360 + LTR49 LTR ERV1 1 343 -252 985 156 18 0 chrX 76909541 76909708 -85690222 + LTR29 LTR ERV1 387 556 -66 * 1867 213 17 38 chrX 76909932 76910466 -85689464 - MER41B LTR ERV1 0 510 100 8386 199 7 9 chrX 76910499 76912456 -85687474 - MER41B-int LTR ERV1 -3 6673 4677 2280 155 59 5 chrX 76912458 76912864 -85687066 + MSTA LTR MaLR 1 428 0 8403 190 52 7 chrX 76912864 76914430 -85685500 + MSTA-int LTR MaLR 1 1637 -14 2337 143 36 17 chrX 76914453 76914865 -85685065 + MSTA LTR MaLR 9 428 0 225 242 15 15 chrX 76915225 76915291 -85684639 - MER113 DNA MER1_type? 0 521 456 1342 257 7 0 chrX 76915346 76915653 -85684277 + AluJo SINE Alu 1 309 -3 477 258 179 0 chrX 76915969 76916120 -85683810 + MER5A DNA MER1_type 11 188 -1 1407 271 121 9 chrX 76916134 76916672 -85683258 + Charlie1a DNA MER1_type 6 603 -852 791 194 36 12 chrX 76916687 76916852 -85683078 + MSTB1-int LTR MaLR 1483 1651 0 1785 201 66 12 chrX 76916852 76917260 -85682670 + MSTB1 LTR MaLR 1 430 -2 13565 77 1 2 chrX 76917365 76919997 -85679933 - L1PA5 LINE L1 -7 6462 3833 6906 117 3 0 chrX 76919997 76920970 -85678960 - L1PA5 LINE L1 -5478 983 8 2950 197 36 53 chrX 76921031 76921809 -85678121 + L1MA9 LINE L1 5345 6109 -203 762 297 18 6 chrX 76921841 76922178 -85677752 - L1M4 LINE L1 -2772 3374 3034 4534 216 53 13 chrX 76922206 76923423 -85676507 - L1MC2 LINE L1 -25 6737 5485 485 239 26 0 chrX 76923432 76923549 -85676381 + L1M4 LINE L1 4036 4155 -1991 4720 257 41 26 chrX 76923549 76924209 -85675721 - L1MC2 LINE L1 -2098 4466 3818 16733 28 0 2 chrX 76924209 76926965 -85672965 + L1PA2 LINE L1 3402 6155 0 4720 257 41 26 chrX 76926965 76928407 -85671523 - L1MC2 LINE L1 -2746 3818 2333 1480 212 69 62 chrX 76928474 76928879 -85671051 + MSTD-int LTR MaLR 1323 1730 -5 1081 235 126 45 chrX 76928900 76929257 -85670673 + MSTD LTR MaLR 11 396 0 559 268 81 87 chrX 76929328 76929386 -85670544 - L1MC2 LINE L1 -5771 274 217 2902 88 22 50 chrX 76929386 76929843 -85670087 - MLT2A1 LTR ERVL 0 444 1 559 268 81 87 chrX 76929843 76930094 -85669836 - L1MC2 LINE L1 -5828 217 16 21 71 0 0 chrX 76930339 76930381 -85669549 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chrX 76930756 76930779 -85669151 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chrX 76931141 76931171 -85668759 + AT_rich Low_complexity Low_complexity 1 30 0 351 279 127 74 chrX 76931291 76931535 -85668395 + MER46C DNA MER2_type 1 257 -81 21 57 0 0 chrX 76932338 76932373 -85667557 + AT_rich Low_complexity Low_complexity 1 35 0 1452 283 79 24 chrX 76932546 76933309 -85666621 + L1M4c LINE L1 1092 1996 -4388 2254 100 3 0 chrX 76933309 76933609 -85666321 + AluSg SINE Alu 1 301 -9 1452 283 79 24 chrX 76933609 76933785 -85666145 + L1M4c LINE L1 1996 2161 -4223 5146 183 8 8 chrX 76933825 76935263 -85664667 - L1PB3 LINE L1 0 6870 5432 4737 262 40 41 chrX 76935257 76935846 -85664084 - L1PB3 LINE L1 -2375 4487 3898 * 252 163 0 0 chrX 76935846 76935889 -85664041 + MADE1 DNA Mariner 10 52 -28 4737 262 40 41 chrX 76935889 76940681 -85659249 - L1PB3 LINE L1 -2964 3898 6 4861 259 61 26 chrX 76940694 76942923 -85657007 + L1M1 LINE L1 3344 5654 -1911 1869 266 35 0 chrX 76942919 76943351 -85656579 + L1M1 LINE L1 742 1188 -6378 * 4856 246 29 22 chrX 76943697 76945254 -85654676 + L1M1 LINE L1 4413 5980 -1585 713 144 173 0 chrX 76945258 76945397 -85654533 + MSTA LTR MaLR 1 163 -265 1752 239 15 57 chrX 76945401 76945490 -85654440 + L1M1 LINE L1 5896 5987 -1578 2041 152 112 25 chrX 76945490 76945884 -85654046 + MSTA LTR MaLR 1 428 0 1752 239 15 57 chrX 76945884 76946388 -85653542 + L1M1 LINE L1 5987 6464 -1101 934 187 49 15 chrX 76946356 76946559 -85653371 + L1PA16 LINE L1 7376 7585 0 * 469 272 0 0 chrX 76946556 76946681 -85653249 + L1M1 LINE L1 6443 6567 -998 * 419 290 75 71 chrX 76946683 76947121 -85652809 + L1PA16 LINE L1 1539 1978 -5603 9197 250 53 28 chrX 76947233 76949279 -85650651 + L1PA16 LINE L1 2183 4175 -3429 1700 194 7 0 chrX 76949279 76949578 -85650352 + AluJb SINE Alu 1 301 -11 9197 250 53 28 chrX 76949578 76950263 -85649667 + L1PA16 LINE L1 4175 4841 -2763 443 62 16 0 chrX 76950263 76950327 -85649603 + MER41B LTR ERV1 483 547 -88 9197 250 53 28 chrX 76950327 76951494 -85648436 + L1PA16 LINE L1 4841 5977 -1627 2925 174 89 24 chrX 76951494 76952176 -85647754 + LTR8A LTR ERV1 1 727 0 9197 250 53 28 chrX 76952176 76953366 -85646564 + L1PA16 LINE L1 5977 7499 -105 239 200 0 43 chrX 76953367 76953437 -85646493 + L1PA16 LINE L1 7536 7602 -2 * 1003 206 19 38 chrX 76953432 76953842 -85646088 + L1M1 LINE L1 6546 6951 -743 6533 135 13 16 chrX 76953856 76955121 -85644809 - L1MA2 LINE L1 0 6304 5042 2719 201 34 64 chrX 76955136 76956063 -85643867 + L1MA9 LINE L1 4898 5785 -527 2213 94 0 0 chrX 76956063 76956349 -85643581 + AluSg SINE Alu 1 286 -24 2719 201 34 64 chrX 76956349 76956559 -85643371 + L1MA9 LINE L1 5785 6000 -312 734 241 48 53 chrX 76956559 76956996 -85642934 + MLT1A1 LTR MaLR 1 363 -2 1226 197 70 10 chrX 76956997 76957296 -85642634 + L1MA9 LINE L1 5996 6312 0 3059 177 37 13 chrX 76957638 76958523 -85641407 + L1PB1 LINE L1 4827 5731 -420 2178 56 0 4 chrX 76958523 76958789 -85641141 + AluY SINE Alu 38 302 -9 3059 177 37 13 chrX 76958789 76958853 -85641077 + L1PB1 LINE L1 5731 5792 -359 261 134 30 15 chrX 76958876 76958943 -85640987 + (TA)n Simple_repeat Simple_repeat 1 68 0 2460 117 5 3 chrX 76958943 76959312 -85640618 + L1PB1 LINE L1 5782 6151 0 349 358 73 0 chrX 76959362 76959513 -85640417 + MIR3 SINE MIR 38 199 -9 5585 229 47 6 chrX 76959879 76960118 -85639812 + L1PA15-16 LINE L1 1 229 -6620 2006 218 9 19 chrX 76960118 76960550 -85639380 + MSTA LTR MaLR 1 428 0 5585 229 47 6 chrX 76960550 76961601 -85638329 + L1PA15-16 LINE L1 229 1233 -5616 2133 212 0 0 chrX 76961597 76962086 -85637844 - L1PA13 LINE L1 -4739 2835 2354 * 2183 209 17 10 chrX 76962869 76963424 -85636506 + L1M4 LINE L1 5201 5758 -426 393 293 13 51 chrX 76963424 76963581 -85636349 + L1M3b LINE L1 1 151 -6130 3122 283 56 64 chrX 76963591 76963973 -85635957 - L1M4c LINE L1 -4543 1598 1214 1793 42 5 0 chrX 76963973 76964190 -85635740 - AluY SINE Alu -6 305 88 3122 283 56 64 chrX 76964190 76965494 -85634436 - L1M4c LINE L1 -4927 1214 166 917 279 8 20 chrX 76965497 76965751 -85634179 - L1M4c LINE L1 -5889 252 2 582 256 60 43 chrX 76965775 76966056 -85633874 + L1MDa LINE L1 1870 2155 -4385 541 208 0 20 chrX 76966063 76966164 -85633766 - Tigger7 DNA MER2_type 0 2487 2389 * 1380 266 0 0 chrX 76966162 76966429 -85633501 - Tigger7 DNA MER2_type -2220 267 1 276 266 110 35 chrX 76966447 76966729 -85633201 + L1MDa LINE L1 2190 2492 -4048 3775 231 45 11 chrX 76967421 76968003 -85631927 + L1PA15 LINE L1 1278 1839 -4958 405 0 0 0 chrX 76968003 76968048 -85631882 + (TA)n Simple_repeat Simple_repeat 2 46 0 3775 231 45 11 chrX 76968048 76968795 -85631135 + L1PA15 LINE L1 1839 2648 -4149 6958 256 35 11 chrX 76968797 76970906 -85629024 + L1PA15 LINE L1 3174 5333 -1464 595 203 28 42 chrX 76970905 76971023 -85628907 + L1PA15 LINE L1 6502 6619 -197 * 7585 24 0 1 chrX 76971023 76972161 -85627769 + L1PA4 LINE L1 5016 6152 -3 595 203 28 42 chrX 76972161 76972185 -85627745 + L1PA15 LINE L1 6619 6642 -174 626 193 0 8 chrX 76972190 76972309 -85627621 + L1MCa LINE L1 465 582 -5844 * 2013 187 38 30 chrX 76972301 76972830 -85627100 + L1MCa LINE L1 1073 1605 -4821 285 94 87 13 chrX 76972845 76972994 -85626936 + (TA)n Simple_repeat Simple_repeat 1 160 0 1032 150 69 13 chrX 76973005 76973238 -85626692 - L1MCa LINE L1 -4479 1947 1702 271 126 46 11 chrX 76973238 76973325 -85626605 + (TA)n Simple_repeat Simple_repeat 1 90 0 354 198 36 30 chrX 76973337 76973504 -85626426 + (TATAA)n Simple_repeat Simple_repeat 2 169 0 2109 252 27 27 chrX 76973523 76974274 -85625656 - L1M4 LINE L1 -807 5339 4589 476 219 31 8 chrX 76974347 76974475 -85625455 - L1M4 LINE L1 -1537 4609 4479 5518 89 11 0 chrX 76974509 76975376 -85624554 + L1P2 LINE L1 4603 5475 -679 1605 47 5 0 chrX 76975365 76975557 -85624373 - L1P3 LINE L1 -537 5635 5443 * 507 228 26 98 chrX 76975570 76975763 -85624167 + L1MC2 LINE L1 5940 6118 -226 1160 213 42 97 chrX 76975763 76976167 -85623763 + MLT1B LTR MaLR 1 382 -8 889 198 27 40 chrX 76976175 76976397 -85623533 + L1MC1 LINE L1 6110 6328 -5 1967 285 73 26 chrX 76976398 76977462 -85622468 + L1ME1 LINE L1 3836 4949 -1197 2560 268 45 19 chrX 76977501 76978536 -85621394 + L1ME1 LINE L1 5089 6146 -20 22 0 0 0 chrX 76978541 76978563 -85621367 + AT_rich Low_complexity Low_complexity 1 22 0 1342 264 56 42 chrX 76979408 76980234 -85619696 + L1M3 LINE L1 805 1797 -4516 4379 243 31 32 chrX 76980251 76982034 -85617896 + L1M3 LINE L1 4176 5955 -452 2182 195 16 12 chrX 76982057 76982482 -85617448 + MER31A LTR ERV1 51 477 -8 1149 230 41 91 chrX 76982488 76982906 -85617024 + MER31A-int LTR ERV1 35 431 -4505 548 325 61 41 chrX 76982907 76983153 -85616777 + MER31A-int LTR ERV1 553 803 -4133 492 189 0 11 chrX 76983191 76983286 -85616644 + MER31A-int LTR ERV1 1156 1249 -3687 1251 233 46 61 chrX 76983291 76983858 -85616072 + MER31A-int LTR ERV1 963 1667 -3269 653 209 98 87 chrX 76983894 76984498 -85615432 + MER31A-int LTR ERV1 1702 2333 -2603 433 221 33 25 chrX 76984528 76984650 -85615280 + MER31A-int LTR ERV1 3646 3768 -2178 5433 211 52 31 chrX 76984651 76986050 -85613880 + MER31A-int LTR ERV1 3104 4531 -405 10000 216 23 21 chrX 76986209 76989139 -85610791 - L1PA15 LINE L1 -1 6815 3890 3445 82 2 0 chrX 76989139 76989601 -85610329 - L1PA8 LINE L1 -2 6170 5708 10000 216 23 21 chrX 76989601 76991465 -85608465 - L1PA15 LINE L1 -2926 3890 2022 453 123 41 0 chrX 76991465 76991538 -85608392 - MADE1 DNA Mariner -4 76 1 10000 216 23 21 chrX 76991538 76992087 -85607843 - L1PA15 LINE L1 -4794 2022 1475 3130 269 8 20 chrX 76992117 76992863 -85607067 - L1PA15 LINE L1 -6049 738 2 1065 211 26 37 chrX 76992864 76993134 -85606796 + MER31A-int LTR ERV1 4648 4914 -22 2238 203 10 27 chrX 76993135 76993249 -85606681 + MER31A LTR ERV1 1 115 -370 1002 247 68 31 chrX 76993249 76993601 -85606329 - MLT1A1 LTR MaLR 0 365 1 2238 203 10 27 chrX 76993601 76993969 -85605961 + MER31A LTR ERV1 115 475 -10 1903 226 23 2 chrX 76993976 76994409 -85605521 + L1MB2 LINE L1 5713 6154 -17 241 312 5 134 chrX 76994631 76994833 -85605097 - MIR3 SINE MIR -1 207 32 1077 240 65 74 chrX 76994853 76995315 -85604615 + MLT1C LTR MaLR 6 463 -4 281 301 29 19 chrX 76995482 76995585 -85604345 - MLT1L LTR MaLR -59 556 453 26629 121 13 15 chrX 76995585 76999466 -85600464 + MER52A-int LTR ERV1 2857 6732 -359 1519 163 0 8 chrX 76999462 76999713 -85600217 + MER52A-int LTR ERV1 6843 7091 0 * 6870 187 108 90 chrX 76999713 77001437 -85598493 + MER52A LTR ERV1 1 1755 0 276 100 0 0 chrX 77001437 77001474 -85598456 + MLT2D LTR ERVL 376 412 -2 1407 162 5 5 chrX 77001611 77001833 -85598097 + AluSx SINE Alu 1 222 -90 3955 161 21 3 chrX 77001833 77002537 -85597393 + L1PA16 LINE L1 5446 6162 -4 584 105 0 11 chrX 77002540 77002635 -85597295 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 255 364 42 18 chrX 77002759 77002924 -85597006 - MER5B DNA MER1_type -3 175 7 24 77 0 0 chrX 77003031 77003083 -85596847 + AT_rich Low_complexity Low_complexity 1 52 0 235 188 78 0 chrX 77005156 77005220 -85594710 - MER92A LTR ERV1 -2 410 342 1993 232 43 46 chrX 77005221 77005807 -85594123 - MER92B LTR ERV1 -52 584 1 547 278 23 17 chrX 77005836 77006012 -85593918 + MIR SINE MIR 68 244 -18 3678 180 10 29 chrX 77007842 77008341 -85591589 - L1PA15 LINE L1 0 6868 6386 2102 158 83 13 chrX 77008341 77008739 -85591191 - MSTA LTR MaLR 0 428 3 3678 180 10 29 chrX 77008739 77009006 -85590924 - L1PA15 LINE L1 -482 6386 6116 2436 83 3 3 chrX 77009025 77009338 -85590592 - AluSp SINE Alu 0 313 1 5448 227 41 12 chrX 77009338 77010319 -85589611 - L1PA15 LINE L1 -736 6132 5080 324 0 0 0 chrX 77010319 77010355 -85589575 + (TG)n Simple_repeat Simple_repeat 1 36 0 5448 227 41 12 chrX 77010355 77011024 -85588906 - L1PA15 LINE L1 -1788 5080 4432 518 298 71 33 chrX 77011005 77011640 -85588290 - L1MDb LINE L1 -2540 3866 3208 * 309 288 62 40 chrX 77011623 77011711 -85588219 - L1MDb LINE L1 -5137 1272 1187 * 1611 227 0 0 chrX 77011711 77012019 -85587911 - AluJb SINE Alu -2 310 3 309 288 62 40 chrX 77012019 77012301 -85587629 - L1MDb LINE L1 -5222 1187 894 3839 222 15 0 chrX 77012362 77013086 -85586844 - L1PA15 LINE L1 -6102 747 13 1542 238 47 0 chrX 77013129 77013511 -85586419 + L1PA15-16 LINE L1 1377 1776 -5073 3593 67 28 10 chrX 77013519 77014012 -85585918 - L1PA7 LINE L1 -4 6150 5649 264 279 0 0 chrX 77014026 77014087 -85585843 + L1 LINE L1 2624 2684 -3462 * 21447 127 14 7 chrX 77014085 77018393 -85581537 + L1PA8A LINE L1 1798 6130 -1 11397 212 31 14 chrX 77018391 77020698 -85579232 - L1M1 LINE L1 -5205 2360 16 * 291 250 0 83 chrX 77020697 77020817 -85579113 + L1M4c LINE L1 2371 2480 -3904 * 5927 260 135 38 chrX 77020811 77022170 -85577760 + L1MB4 LINE L1 382 1608 -5240 7020 23 0 0 chrX 77022170 77022984 -85576946 + L1PA3 LINE L1 5338 6152 -3 5927 260 135 38 chrX 77022984 77025707 -85574223 + L1MB4 LINE L1 1608 4858 -1990 2268 213 21 37 chrX 77025701 77026230 -85573700 + L1MB4 LINE L1 6274 6793 -89 * 1846 157 20 0 chrX 77026230 77026529 -85573401 - AluSx SINE Alu -5 307 3 2268 213 21 37 chrX 77026529 77026618 -85573312 + L1MB4 LINE L1 6793 6882 0 1701 171 24 0 chrX 77026725 77027012 -85572918 - AluSx SINE Alu -15 297 4 537 249 35 53 chrX 77027251 77027420 -85572510 + L1MA7 LINE L1 5965 6130 -161 8245 187 39 6 chrX 77027472 77030418 -85569512 + L1PBa LINE L1 1 2134 -4729 222 37 0 0 chrX 77030418 77030445 -85569485 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 8245 187 39 6 chrX 77030445 77030872 -85569058 + L1PBa LINE L1 2134 2545 -4318 1080 150 9 24 chrX 77030875 77031123 -85568807 + L1PBa LINE L1 2669 2971 -3891 36 40 0 0 chrX 77031129 77031179 -85568751 + AT_rich Low_complexity Low_complexity 1 50 0 4785 193 54 14 chrX 77031179 77032145 -85567785 - L1PB2 LINE L1 -7 6144 5218 188 33 0 33 chrX 77032145 77032175 -85567755 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4785 193 54 14 chrX 77032175 77033119 -85566811 - L1PB2 LINE L1 -933 5218 4152 545 71 50 10 chrX 77033119 77033218 -85566712 + CT-rich Low_complexity Low_complexity 3 105 0 2225 199 30 4 chrX 77033219 77033686 -85566244 - L1PB2 LINE L1 -1957 4189 3711 1807 257 84 7 chrX 77033687 77034256 -85565674 + LTR48B LTR ERV1 32 644 0 724 211 75 0 chrX 77034256 77034416 -85565514 + MER3 DNA MER1_type 37 208 -1 468 280 27 20 chrX 77034501 77034651 -85565279 - MIR SINE MIR -59 203 53 21 0 0 0 chrX 77035837 77035858 -85564072 + AT_rich Low_complexity Low_complexity 1 21 0 2090 119 3 32 chrX 77037094 77037404 -85562526 - AluSx SINE Alu -11 301 1 422 323 139 17 chrX 77037853 77038147 -85561783 - L2 LINE L2 -3 3310 2981 22 0 0 0 chrX 77038414 77038436 -85561494 + AT_rich Low_complexity Low_complexity 1 22 0 3166 238 49 20 chrX 77038735 77040063 -85559867 - L1MB4 LINE L1 0 6180 4807 244 333 70 0 chrX 77041289 77041418 -85558512 + L1PA15 LINE L1 1121 1258 -5529 4248 248 33 7 chrX 77041454 77042534 -85557396 + L1PA15 LINE L1 1170 2277 -4510 2871 142 15 15 chrX 77042573 77043044 -85556886 + THE1C-int LTR MaLR 1110 1580 0 1646 178 46 38 chrX 77043046 77043416 -85556514 + THE1C LTR MaLR 3 375 0 3303 251 15 37 chrX 77043425 77044487 -85555443 + L1PA15 LINE L1 2385 3423 -3374 8318 203 51 8 chrX 77044491 77047170 -85552760 + L1PA15 LINE L1 3829 6627 -189 1082 171 0 20 chrX 77047309 77047508 -85552422 + AluSc SINE Alu 112 306 -3 1656 200 77 4 chrX 77047537 77048017 -85551913 + L1MA4A LINE L1 1612 2126 -4723 5446 222 42 37 chrX 77048021 77048513 -85551417 + L1MA4A LINE L1 2466 2954 -3894 1267 231 3 37 chrX 77048513 77048812 -85551118 + AluJo SINE Alu 1 289 -23 5446 222 42 37 chrX 77048812 77050511 -85549419 + L1MA4A LINE L1 2954 4669 -2179 4131 191 22 56 chrX 77051483 77052236 -85547694 + L1MA4A LINE L1 6047 6761 -244 2199 104 0 0 chrX 77052236 77052525 -85547405 + AluSc SINE Alu 1 289 -20 4131 191 22 56 chrX 77052525 77052758 -85547172 + L1MA4A LINE L1 6761 7000 -5 25 0 0 0 chrX 77052910 77052935 -85546995 + AT_rich Low_complexity Low_complexity 1 25 0 212 238 0 25 chrX 77053028 77053108 -85546822 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 331 233 86 31 chrX 77053407 77053570 -85546360 - L1ME4a LINE L1 0 6121 5950 53 73 0 0 chrX 77053631 77053740 -85546190 + AT_rich Low_complexity Low_complexity 1 109 0 1914 156 153 5 chrX 77053757 77054130 -85545800 - MSTA LTR MaLR 0 428 1 5132 171 3 14 chrX 77054130 77055026 -85544904 - MSTA-int LTR MaLR 0 1580 695 296 313 23 15 chrX 77055044 77055175 -85544755 - L1ME4a LINE L1 -421 5700 5569 361 333 35 6 chrX 77055579 77055753 -85544177 + MARNA DNA Mariner 18 196 -390 277 322 167 17 chrX 77056021 77056201 -85543729 - MLT1I LTR MaLR -192 217 11 690 316 37 16 chrX 77056820 77057064 -85542866 + MIR SINE MIR 1 249 -13 529 218 122 51 chrX 77057214 77057370 -85542560 + MER5B DNA MER1_type 11 177 -1 283 261 31 69 chrX 77057544 77057674 -85542256 + MARNA DNA Mariner 328 452 -134 384 330 55 10 chrX 77059066 77059417 -85540513 + MLT1J2 LTR MaLR 3 387 -63 2221 125 34 3 chrX 77059920 77060273 -85539657 - THE1B LTR MaLR 0 364 1 200 237 41 31 chrX 77060787 77060884 -85539046 + (TTTA)n Simple_repeat Simple_repeat 2 99 0 760 132 0 0 chrX 77061193 77061307 -85538623 - L1PA13 LINE L1 -5 6158 6045 35 0 0 0 chrX 77061314 77061349 -85538581 + AT_rich Low_complexity Low_complexity 1 35 0 9627 221 36 3 chrX 77061367 77064146 -85535784 - L1PA3 LINE L1 -125 6030 3154 10267 52 1 0 chrX 77064161 77066227 -85533703 + L1PA5 LINE L1 4082 6153 -1 2571 65 3 3 chrX 77066229 77066584 -85533346 + L1P LINE L1 3174 3528 -2618 28 0 0 0 chrX 77066925 77066953 -85532977 + AT_rich Low_complexity Low_complexity 1 28 0 2204 117 3 0 chrX 77066954 77067263 -85532667 - AluSx SINE Alu -2 310 1 4825 165 36 3 chrX 77067315 77068288 -85531642 - L1PA15 LINE L1 -3 6162 5158 201 129 0 0 chrX 77068638 77068669 -85531261 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1077 232 0 0 chrX 77069567 77069787 -85530143 - MER58A DNA MER1_type 0 224 5 302 199 18 0 chrX 77069857 77069933 -85529997 - L1P LINE L1 -1822 4324 4246 5565 46 0 0 chrX 77070843 77071522 -85528408 + L1PA4 LINE L1 5474 6152 -3 3864 165 10 1 chrX 77071740 77072431 -85527499 + L1PA13 LINE L1 5463 6159 -4 1938 47 18 14 chrX 77072806 77073081 -85526849 + L1PA4 LINE L1 5875 6150 -5 842 124 38 18 chrX 77073625 77073862 -85526068 + GA-rich Low_complexity Low_complexity 1 275 -16 246 32 0 0 chrX 77073862 77073893 -85526037 + (TG)n Simple_repeat Simple_repeat 1 31 0 842 124 38 18 chrX 77073893 77073911 -85526019 + GA-rich Low_complexity Low_complexity 275 291 0 661 252 58 69 chrX 77075565 77075867 -85524063 + L1MDb LINE L1 782 1079 -5330 2406 66 0 3 chrX 77075867 77076170 -85523760 + AluY SINE Alu 1 302 -9 661 252 58 69 chrX 77076170 77076316 -85523614 + L1MDb LINE L1 1079 1225 -5184 1623 270 43 24 chrX 77076559 77077137 -85522793 + L1M4 LINE L1 351 939 -5603 1325 235 42 90 chrX 77077166 77077809 -85522121 - LTR9 LTR ERV1 0 612 1 28967 158 17 9 chrX 77077810 77082834 -85517096 - HUERS-P3 LTR ERV1 -3 8916 2397 1853 255 59 13 chrX 77082996 77083522 -85516408 - HUERS-P3 LTR ERV1 -8369 550 1 997 239 53 122 chrX 77083522 77084054 -85515876 - LTR9 LTR ERV1 0 612 118 527 223 14 14 chrX 77084062 77084201 -85515729 + L1MA6 LINE L1 5459 5597 -703 1072 161 24 0 chrX 77084201 77084406 -85515524 + L1MA6 LINE L1 6091 6300 0 2107 131 3 0 chrX 77084412 77084709 -85515221 + AluY SINE Alu 3 300 -11 230 300 0 0 chrX 77084923 77085013 -85514917 + L1M4 LINE L1 1107 1196 -5346 905 259 92 59 chrX 77085160 77085684 -85514246 + L1M4 LINE L1 1372 1912 -4734 * 3736 284 62 18 chrX 77085677 77086053 -85513877 + L1MB4 LINE L1 996 1354 -5028 890 29 0 0 chrX 77086053 77086157 -85513773 + L1PA3 LINE L1 6049 6152 -3 3736 284 62 18 chrX 77086157 77089674 -85510256 + L1MB4 LINE L1 1354 5068 -1314 15317 198 39 9 chrX 77089738 77092118 -85507812 + L1MA2 LINE L1 1 2495 -5070 201 39 0 0 chrX 77092118 77092144 -85507786 + (CAA)n Simple_repeat Simple_repeat 2 27 0 15317 198 39 9 chrX 77092144 77092793 -85507137 + L1MA2 LINE L1 2495 3123 -4442 11526 196 51 10 chrX 77092790 77096948 -85502982 + L1MA2 LINE L1 3373 7720 -3 * 706 279 44 3 chrX 77096997 77097312 -85502618 + L1MB4 LINE L1 5160 5487 -895 4213 162 26 38 chrX 77097312 77098172 -85501758 - MER11C LTR ERVK 0 1071 223 2368 21 0 3 chrX 77098172 77098459 -85501471 - L1PA4 LINE L1 -590 5565 5280 4955 29 2 0 chrX 77098459 77099040 -85500890 + L1PA4 LINE L1 5569 6152 -3 1775 89 8 0 chrX 77099084 77099319 -85500611 - MER11B LTR ERVK -999 237 1 2961 237 29 44 chrX 77099319 77099516 -85500414 + L1MB4 LINE L1 5482 5680 -736 1680 151 85 0 chrX 77099516 77099787 -85500143 - AluSx SINE Alu -14 298 5 2961 237 29 44 chrX 77099787 77100536 -85499394 + L1MB4 LINE L1 5680 6416 0 257 299 79 0 chrX 77100551 77100678 -85499252 + L1MB7 LINE L1 2896 3032 -3114 1982 312 25 12 chrX 77100681 77101347 -85498583 + L1MA7 LINE L1 1229 1903 -5306 2348 154 15 7 chrX 77101550 77101953 -85497977 + L1P3 LINE L1 305 710 -5751 287 301 130 72 chrX 77102175 77102451 -85497479 - MLT1J LTR MaLR -204 307 16 273 253 24 12 chrX 77102755 77102838 -85497092 - MIR SINE MIR -126 136 53 297 331 6 70 chrX 77103023 77103180 -85496750 + MIR SINE MIR 40 186 -76 * 445 399 26 11 chrX 77103178 77103449 -85496481 + L2 LINE L2 2523 2797 -517 373 350 89 46 chrX 77103478 77103849 -85496081 + L2 LINE L2 2923 3309 -4 200 328 0 16 chrX 77103994 77104055 -85495875 + L2 LINE L2 3254 3313 0 417 322 6 6 chrX 77105586 77105766 -85494164 + MLT1-int LTR MaLR 398 577 -794 2260 200 62 69 chrX 77105782 77106034 -85493896 + L1MB7 LINE L1 4158 4410 -1736 2034 116 0 4 chrX 77106034 77106311 -85493619 + AluSg SINE Alu 3 278 -32 2260 200 62 69 chrX 77106311 77106555 -85493375 + L1MB7 LINE L1 4410 4654 -1492 2237 120 0 3 chrX 77106555 77106864 -85493066 + AluSc SINE Alu 1 308 -1 2260 200 62 69 chrX 77106864 77107205 -85492725 + L1MB7 LINE L1 4654 4990 -1156 5748 180 38 17 chrX 77107258 77109441 -85490489 - L1MA3 LINE L1 -160 7564 5335 * 9859 197 73 6 chrX 77109437 77112374 -85487556 - L1MA3 LINE L1 -4309 3256 25 3678 243 38 17 chrX 77112385 77113393 -85486537 + L1MA7 LINE L1 3745 4785 -2423 1748 238 60 54 chrX 77113393 77113944 -85485986 - MLT2B3 LTR ERVL 0 554 1 3678 243 38 17 chrX 77113944 77114163 -85485767 + L1MA7 LINE L1 4785 4998 -2210 2548 204 41 52 chrX 77114139 77114279 -85485651 + L1MA7 LINE L1 6447 6587 -766 * 2153 199 29 9 chrX 77114279 77114727 -85485203 + MSTB2 LTR MaLR 1 457 0 2548 204 41 52 chrX 77114727 77115296 -85484634 + L1MA7 LINE L1 6587 7148 -205 660 241 36 0 chrX 77115309 77115475 -85484455 - L1PA15 LINE L1 0 6165 5994 * 10579 220 21 43 chrX 77115471 77116770 -85483160 - L1PA15-16 LINE L1 -1146 5703 4377 384 22 0 0 chrX 77116770 77116815 -85483115 + (TG)n Simple_repeat Simple_repeat 1 45 0 10579 220 21 43 chrX 77116815 77117324 -85482606 - L1PA15-16 LINE L1 -2472 4377 3858 1960 128 3 20 chrX 77117324 77117620 -85482310 - AluSx SINE Alu -15 297 7 10579 220 21 43 chrX 77117620 77117809 -85482121 - L1PA15-16 LINE L1 -2991 3858 3666 2084 108 0 0 chrX 77117809 77118078 -85481852 + AluSg SINE Alu 22 290 -20 10579 220 21 43 chrX 77118078 77119091 -85480839 - L1PA15-16 LINE L1 -3183 3666 2758 2298 137 64 15 chrX 77119101 77119509 -85480421 - MSTA LTR MaLR 0 428 1 3721 214 13 25 chrX 77119523 77120317 -85479613 - MSTA-int LTR MaLR -14 1637 854 2625 220 45 52 chrX 77120331 77121081 -85478849 + L1MB7 LINE L1 5293 6038 -146 1782 76 0 5 chrX 77121081 77121304 -85478626 - AluSx SINE Alu -90 222 1 2625 220 45 52 chrX 77121304 77121404 -85478526 + L1MB7 LINE L1 6038 6137 -47 519 294 90 20 chrX 77122319 77122564 -85477366 + L2 LINE L2 2980 3241 -72 835 237 6 0 chrX 77122574 77122743 -85477187 - AluJo SINE Alu -21 291 122 718 147 0 0 chrX 77123014 77123130 -85476800 - MLT1D LTR MaLR 0 505 390 789 226 24 52 chrX 77123130 77123342 -85476588 - MLT2B3 LTR ERVL 0 554 349 43021 32 21 1 chrX 77123363 77129395 -85470535 - L1HS LINE L1 0 6155 1 1399 167 31 104 chrX 77129395 77129778 -85470152 - MLT2B3 LTR ERVL -195 359 5 2825 37 0 14 chrX 77129778 77130127 -85469803 - LTR14A LTR ERVK 0 344 1 1132 257 36 70 chrX 77130134 77130546 -85469384 - MLT1D LTR MaLR -107 398 1 247 325 24 0 chrX 77131739 77131822 -85468108 + MIR SINE MIR 65 149 -113 1457 197 69 3 chrX 77132116 77132420 -85467510 + MLT1E2 LTR MaLR 303 626 0 7147 38 40 3 chrX 77134192 77135057 -85464873 + MER11D LTR ERVK 1 897 0 617 303 42 46 chrX 77135681 77135988 -85463942 - L2 LINE L2 0 3313 3008 7279 161 14 3 chrX 77135991 77137230 -85462700 - HSMAR2 DNA Mariner 0 1302 50 189 0 0 0 chrX 77137241 77137262 -85462668 + (TTTAA)n Simple_repeat Simple_repeat 1 21 0 3956 124 10 3 chrX 77137262 77137850 -85462080 - L1PA10 LINE L1 -20 6148 5554 2242 115 12 24 chrX 77137850 77138467 -85461463 + L1P4 LINE L1 4992 5591 -577 301 67 22 0 chrX 77138467 77138512 -85461418 - HSMAR2 DNA Mariner -1251 51 6 737 352 84 52 chrX 77138551 77139410 -85460520 - L2 LINE L2 -1 3271 2387 23 0 0 0 chrX 77139692 77139715 -85460215 + AT_rich Low_complexity Low_complexity 1 23 0 1830 128 205 8 chrX 77139822 77140173 -85459757 - MSTA LTR MaLR -8 420 1 312 272 43 11 chrX 77140218 77140310 -85459620 + L1MC/D LINE L1 5475 5569 -2239 3217 50 0 2 chrX 77140432 77140835 -85459095 - L1PA5 LINE L1 -5 6149 5748 1318 264 56 42 chrX 77140838 77141335 -85458595 - L1M3c LINE L1 -4962 1179 676 1059 327 34 24 chrX 77141919 77142335 -85457595 - L1M3c LINE L1 -5721 420 1 1763 154 32 43 chrX 77142722 77143098 -85456832 - THE1C LTR MaLR -2 373 2 1250 296 117 30 chrX 77143192 77143689 -85456241 - MLT1E2 LTR MaLR 0 626 77 2374 141 8 3 chrX 77143689 77144051 -85455879 - THE1B LTR MaLR 0 364 1 1250 296 117 30 chrX 77144051 77144093 -85455837 - MLT1E2 LTR MaLR -549 77 40 368 250 0 0 chrX 77144442 77144518 -85455412 + Tigger5 DNA MER2_type 4 79 -2244 253 229 49 0 chrX 77144524 77144585 -85455345 - Tigger5 DNA MER2_type -6 2317 2254 1259 82 0 113 chrX 77144794 77144867 -85455063 - L1P LINE L1 -800 5346 5266 6328 25 0 5 chrX 77144867 77145615 -85454315 - L1PA3 LINE L1 0 6155 5412 1259 82 0 113 chrX 77145615 77145772 -85454158 - L1P LINE L1 -880 5266 5142 4238 54 2 2 chrX 77145772 77146297 -85453633 + L1PA7 LINE L1 5616 6150 -4 4169 243 18 11 chrX 77146302 77147414 -85452516 - L1P LINE L1 -1823 4323 3204 10558 38 4 1 chrX 77147428 77149489 -85450441 - L1PA4 LINE L1 -2 6153 4089 5799 67 0 0 chrX 77149490 77150248 -85449682 + L1P LINE L1 3195 3952 -2194 1827 156 6 0 chrX 77150244 77150565 -85449365 - L1P4 LINE L1 -563 5603 5281 * 6617 43 0 1 chrX 77150558 77151364 -85448566 - L1PA4 LINE L1 -2 6153 5349 5843 262 20 28 chrX 77151359 77152240 -85447690 - L1MDa LINE L1 -864 5676 4790 * 1720 172 4 0 chrX 77152240 77152587 -85447343 - AluSx SINE Alu 0 351 4 5843 262 20 28 chrX 77152587 77152660 -85447270 - L1MDa LINE L1 -1750 4790 4718 2223 108 7 0 chrX 77152660 77152966 -85446964 + AluSx SINE Alu 1 308 -4 5843 262 20 28 chrX 77152966 77154045 -85445885 - L1MDa LINE L1 -1822 4718 3655 294 312 89 25 chrX 77154303 77154460 -85445470 + MIR3 SINE MIR 35 201 -7 241 337 83 16 chrX 77154735 77154928 -85445002 - MIR SINE MIR -8 254 49 333 0 0 0 chrX 77154962 77154999 -85444931 + (TG)n Simple_repeat Simple_repeat 2 38 0 2777 217 63 19 chrX 77155002 77155823 -85444107 - L1MD2 LINE L1 -230 6129 5239 1008 266 6 62 chrX 77155860 77156183 -85443747 + MLT1D LTR MaLR 21 325 -180 2273 246 50 19 chrX 77156217 77157151 -85442779 - L1MDa LINE L1 -3082 3458 2489 2072 197 19 34 chrX 77157157 77157686 -85442244 - L1MA9 LINE L1 0 6312 5792 6425 142 11 2 chrX 77157691 77158671 -85441259 - HSMAR1 DNA Mariner -10 1277 289 15293 58 0 6 chrX 77158679 77161393 -85438537 + L1PA5 LINE L1 3441 6149 -5 5298 212 18 27 chrX 77161409 77161701 -85438229 + L1PA16 LINE L1 3833 4126 -2040 7249 43 6 0 chrX 77161701 77162623 -85437307 - L1PA4 LINE L1 -3 6152 5229 5298 212 18 27 chrX 77162623 77164668 -85435262 + L1PA16 LINE L1 4126 6157 -9 2090 187 80 4 chrX 77164678 77165165 -85434765 + L1MA5 LINE L1 5771 6294 -6 1683 123 4 0 chrX 77165603 77165838 -85434092 + AluSx SINE Alu 1 236 -76 638 24 24 0 chrX 77165857 77165940 -85433990 + (TAAAA)n Simple_repeat Simple_repeat 3 87 0 387 331 54 43 chrX 77165944 77166686 -85433244 + L1ME3A LINE L1 4484 5233 -913 245 313 49 7 chrX 77166756 77166900 -85433030 + L1ME3A LINE L1 5347 5496 -668 456 354 89 16 chrX 77166901 77167282 -85432648 + L1ME3A LINE L1 5544 5952 -218 516 344 80 13 chrX 77167591 77167815 -85432115 + MIR SINE MIR 20 258 -4 260 370 32 48 chrX 77167915 77168104 -85431826 - L3 LINE CR1 -1259 318 133 516 323 14 9 chrX 77168138 77168361 -85431569 + MARNA DNA Mariner 312 535 -51 2678 126 23 9 chrX 77170525 77170960 -85428970 - L1MA5 LINE L1 -366 5934 5494 1469 159 42 95 chrX 77170958 77171176 -85428754 + L1MA5 LINE L1 5943 6134 -166 * 1355 191 58 11 chrX 77171176 77171296 -85428634 + AluJo SINE Alu 1 114 -198 315 0 0 0 chrX 77171296 77171331 -85428599 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1355 191 58 11 chrX 77171331 77171488 -85428442 + AluJo SINE Alu 114 291 -21 1469 159 42 95 chrX 77171488 77171647 -85428283 + L1MA5 LINE L1 6134 6300 0 213 174 20 51 chrX 77172115 77172213 -85427717 + CT-rich Low_complexity Low_complexity 4 98 0 300 287 6 48 chrX 77172224 77172391 -85427539 + CT-rich Low_complexity Low_complexity 2 161 0 250 347 8 8 chrX 77172420 77172615 -85427315 + CT-rich Low_complexity Low_complexity 1 195 0 424 215 20 13 chrX 77172632 77172782 -85427148 - L1MD2 LINE L1 -15 6151 6021 380 82 16 0 chrX 77172801 77172862 -85427068 + (TG)n Simple_repeat Simple_repeat 2 63 0 1349 287 33 16 chrX 77172872 77173510 -85426420 - L1MDb LINE L1 -1134 4946 4298 655 192 46 0 chrX 77173544 77173674 -85426256 - AluJo SINE Alu -176 136 1 1574 286 23 29 chrX 77173674 77174325 -85425605 - L1MDb LINE L1 -1816 4264 3618 657 220 129 119 chrX 77174351 77174758 -85425172 - MER41D LTR ERV1 0 557 144 2272 159 34 29 chrX 77174758 77175308 -85424622 - MLT2A2 LTR ERVL 0 554 1 576 282 35 0 chrX 77175308 77175449 -85424481 - MER41C LTR ERV1 -407 147 2 756 298 43 18 chrX 77175474 77175800 -85424130 - L1MDb LINE L1 -2505 3575 3242 1891 243 39 58 chrX 77175807 77176648 -85423282 - L1MDb LINE L1 -3190 2890 2066 617 275 132 29 chrX 77176654 77177172 -85422758 - L1MDb LINE L1 -5016 1064 526 262 309 13 20 chrX 77178428 77178580 -85421350 + CT-rich Low_complexity Low_complexity 3 153 0 201 380 124 0 chrX 77178832 77178945 -85420985 - L2 LINE L2 -9 3263 3137 1327 234 13 46 chrX 77179376 77179769 -85420161 - L1MC3 LINE L1 -1357 6428 6049 685 249 96 3 chrX 77179762 77180161 -85419769 - L1MD2 LINE L1 -487 5872 5437 * 11861 158 24 32 chrX 77180187 77180511 -85419419 - Tigger1 DNA MER2_type -247 2171 1846 3598 70 2 0 chrX 77180511 77180985 -85418945 - L1PA7 LINE L1 -5 6149 5675 11861 158 24 32 chrX 77180985 77182847 -85417083 - Tigger1 DNA MER2_type -572 1846 2 1493 149 31 0 chrX 77182848 77183109 -85416821 + L1MA7 LINE L1 5307 5575 -716 291 250 14 0 chrX 77183121 77183193 -85416737 + L1MA7 LINE L1 5706 5778 -513 219 273 0 0 chrX 77183212 77183267 -85416663 + (TA)n Simple_repeat Simple_repeat 2 56 0 2471 139 38 26 chrX 77183269 77183766 -85416164 + L1MA7 LINE L1 5789 6291 0 440 144 41 0 chrX 77183776 77183873 -85416057 + Charlie5 DNA MER1_type 2385 2485 -127 1280 81 38 0 chrX 77184572 77184757 -85415173 - L1PA10 LINE L1 -11 6157 5966 250 300 12 0 chrX 77184916 77184996 -85414934 - LTR58 LTR ERV1 -250 429 349 233 355 43 0 chrX 77185893 77185986 -85413944 + LTR16A1 LTR ERVL 4 100 -357 787 268 89 69 chrX 77186132 77186479 -85413451 + MLT1J LTR MaLR 66 419 -92 186 337 50 0 chrX 77186625 77186726 -85413204 + L2 LINE L2 1742 1847 -1467 359 262 87 6 chrX 77186887 77187070 -85412860 - HAL1 LINE L1 -856 1651 1454 350 348 68 35 chrX 77187155 77187494 -85412436 - HAL1 LINE L1 -1891 616 267 2215 118 0 3 chrX 77187730 77188036 -85411894 + AluSg SINE Alu 1 305 -5 563 332 20 5 chrX 77189797 77189996 -85409934 + MIR SINE MIR 5 206 -56 333 118 0 0 chrX 77190261 77190312 -85409618 + (TA)n Simple_repeat Simple_repeat 2 52 0 222 359 103 0 chrX 77190324 77190441 -85409489 - L2 LINE L2 -1 3271 3143 181 348 67 44 chrX 77190490 77190625 -85409305 - MIR SINE MIR -123 139 2 476 200 95 0 chrX 77190641 77190736 -85409194 - Tigger2 DNA MER2_type 0 2718 2615 273 267 27 68 chrX 77190771 77190917 -85409013 + L1PA12 LINE L1 1752 1891 -5690 15295 242 25 34 chrX 77190967 77196895 -85403035 + L1PA15 LINE L1 102 6084 -1519 2426 87 0 3 chrX 77196895 77197204 -85402726 + AluSq SINE Alu 1 308 -5 15295 242 25 34 chrX 77197204 77198199 -85401731 + L1PA15 LINE L1 6084 6920 -683 189 0 0 0 chrX 77198199 77198220 -85401710 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 15295 242 25 34 chrX 77198220 77198892 -85401038 + L1PA15 LINE L1 6920 7597 -6 1434 112 6 159 chrX 77198894 77199327 -85400603 - Tigger2 DNA MER2_type -96 2622 1 711 307 63 61 chrX 77199367 77199761 -85400169 + L2 LINE L2 2919 3313 0 2337 85 7 3 chrX 77200390 77200695 -85399235 - AluSc SINE Alu -3 306 1 1800 151 4 4 chrX 77201541 77201812 -85398118 + AluSx SINE Alu 3 273 -39 1333 248 13 20 chrX 77201812 77202207 -85397723 + L1M4c LINE L1 1488 1879 -4505 1173 133 6 0 chrX 77202211 77202377 -85397553 + AluSg/x SINE Alu 124 290 -22 1755 226 65 6 chrX 77202610 77203084 -85396846 + L1MB4 LINE L1 977 1478 -4906 6547 253 49 22 chrX 77203386 77203485 -85396445 + L1MB4 LINE L1 2578 2673 -3743 183 42 0 0 chrX 77203485 77203509 -85396421 + (TA)n Simple_repeat Simple_repeat 1 24 0 6547 253 49 22 chrX 77203509 77204732 -85395198 + L1MB4 LINE L1 2673 3862 -2554 2560 189 103 10 chrX 77204732 77205199 -85394731 + MLT2B3 LTR ERVL 1 520 -34 224 0 0 61 chrX 77205199 77205232 -85394698 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 2560 189 103 10 chrX 77205232 77205271 -85394659 + MLT2B3 LTR ERVL 520 554 0 6547 253 49 22 chrX 77205271 77207631 -85392299 + L1MB4 LINE L1 3862 6377 -39 365 337 52 0 chrX 77208177 77208349 -85391581 + MIR SINE MIR 66 246 -16 1212 161 31 0 chrX 77208607 77208861 -85391069 + L1MA7 LINE L1 6028 6289 -2 22 0 0 0 chrX 77208873 77208895 -85391035 + AT_rich Low_complexity Low_complexity 1 22 0 349 241 60 45 chrX 77209137 77209270 -85390660 + L2 LINE L2 3170 3304 -9 381 289 35 9 chrX 77210508 77210622 -85389308 - L2 LINE L2 -9 3263 3147 1304 217 7 29 chrX 77210624 77210896 -85389034 - MLT1E2 LTR MaLR 0 626 361 3859 220 24 12 chrX 77210909 77211905 -85388025 - L1 LINE L1 -1783 4427 3420 3852 172 27 14 chrX 77211913 77212693 -85387237 - L1P LINE L1 -1722 4424 3635 1315 203 43 3 chrX 77212698 77212998 -85386932 + L1P LINE L1 4445 4756 -1390 425 336 13 13 chrX 77213344 77213493 -85386437 - L1 LINE L1 -5991 150 2 897 244 39 35 chrX 77213576 77213834 -85386096 + LTR53 LTR ERVL 1 259 -260 269 346 51 64 chrX 77214115 77214271 -85385659 + MIR3 SINE MIR 42 195 -13 1984 178 63 2 chrX 77214500 77214915 -85385015 - L1MA4 LINE L1 -5 7714 7275 951 209 30 0 chrX 77214924 77215125 -85384805 - L1MA4 LINE L1 -507 7212 7006 10366 148 31 26 chrX 77215156 77218055 -85381875 + L1PA8 LINE L1 10 2950 -3511 14609 109 9 8 chrX 77218055 77221101 -85378829 + L1PA8 LINE L1 3400 6487 0 4137 244 22 42 chrX 77221102 77222035 -85377895 - L1MA4 LINE L1 -712 7007 6057 389 102 0 0 chrX 77222035 77222094 -85377836 - L1PA12 LINE L1 -1 6167 6109 4137 244 22 42 chrX 77222094 77223125 -85376805 - L1MA4 LINE L1 -1662 6057 5088 1340 143 22 0 chrX 77223136 77223360 -85376570 - L1PA15 LINE L1 -7 6158 5930 1078 225 33 22 chrX 77223479 77223755 -85376175 + LTR43 LTR ERV1 187 465 -137 312 70 0 0 chrX 77223764 77223807 -85376123 + (CTA)n Simple_repeat Simple_repeat 1 43 0 3280 251 56 50 chrX 77224835 77225992 -85373938 + MER52A-int LTR ERV1 2236 3284 -1596 1969 140 0 0 chrX 77225992 77226278 -85373652 - AluSx SINE Alu -26 286 1 3280 251 56 50 chrX 77226278 77227396 -85372534 + MER52A-int LTR ERV1 3284 4394 -486 839 149 6 35 chrX 77227433 77227602 -85372328 + MER52A-int LTR ERV1 3731 4536 -344 820 157 7 135 chrX 77227641 77227727 -85372203 + MER52A-int LTR ERV1 2573 2381 -2499 1937 133 0 0 chrX 77227727 77228042 -85371888 + AluSx SINE Alu 20 334 0 820 157 7 135 chrX 77228042 77228308 -85371622 + MER52A-int LTR ERV1 2380 2678 -2202 1467 184 39 39 chrX 77228453 77228838 -85371092 + MER52A-int LTR ERV1 3882 4266 -1680 2547 248 82 9 chrX 77228897 77229948 -85369982 - L1MA4 LINE L1 -2454 5111 3984 2223 164 11 0 chrX 77229948 77230319 -85369611 + THE1C LTR MaLR 1 375 0 952 129 25 6 chrX 77230319 77230482 -85369448 + THE1C-int LTR MaLR 1 166 -1414 1013 269 25 12 chrX 77230548 77231007 -85368923 - L1MA4 LINE L1 -3598 3967 3501 1769 201 24 12 chrX 77231057 77231390 -85368540 + MER1B DNA MER1_type 1 337 0 25 65 0 0 chrX 77231491 77231537 -85368393 + AT_rich Low_complexity Low_complexity 1 46 0 702 314 42 19 chrX 77231557 77231990 -85367940 - L1M4c LINE L1 -4529 1855 1413 5863 208 57 6 chrX 77232098 77233622 -85366308 - L1MA4 LINE L1 -21 6279 4580 315 0 0 0 chrX 77233622 77233657 -85366273 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5863 208 57 6 chrX 77233657 77234583 -85365347 - L1MA4 LINE L1 -1720 4580 3703 3931 198 35 18 chrX 77234593 77235469 -85364461 - L1PA15 LINE L1 -2 6163 5273 371 278 0 0 chrX 77235480 77235570 -85364360 + L1MC4 LINE L1 6614 6703 -1339 203 161 0 0 chrX 77235570 77235601 -85364329 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 291 124 21 0 chrX 77235601 77235657 -85364273 + MLT2D LTR ERVL 367 414 0 546 158 0 0 chrX 77235657 77235739 -85364191 + MER52A-int LTR ERV1 7010 7091 0 239 263 18 0 chrX 77235739 77235796 -85364134 + MER52A LTR ERV1 1 58 -1697 233 122 0 0 chrX 77236014 77236055 -85363875 + MER52C LTR ERV1 336 376 -902 2667 95 28 15 chrX 77236206 77236605 -85363325 - MLT2A1 LTR ERVL -40 404 1 15189 92 6 0 chrX 77236605 77238609 -85361321 - HERVL-A1 LTR ERVL 0 5654 3639 * 21054 116 23 31 chrX 77238601 77242028 -85357902 - HERVL-A1 LTR ERVL -2253 3401 1 352 78 0 0 chrX 77242028 77242079 -85357851 - MLT2A1 LTR ERVL 0 444 394 402 179 32 21 chrX 77242110 77242205 -85357725 - L1PA15-16 LINE L1 -4184 2665 2570 512 127 0 0 chrX 77242231 77242310 -85357620 - MLT2A1 LTR ERVL -40 404 326 2658 82 36 15 chrX 77242310 77242702 -85357228 - MLT2A1 LTR ERVL -44 400 1 649 140 79 9 chrX 77242702 77242816 -85357114 - MER52A-int LTR ERV1 -78 7013 6892 255 204 0 19 chrX 77242814 77242868 -85357062 - MER52A-int LTR ERV1 -1177 6028 5976 * 790 126 14 14 chrX 77242873 77243016 -85356914 - MER52A-int LTR ERV1 -1256 4690 4548 5249 180 57 84 chrX 77243016 77243550 -85356380 - MER52A-int LTR ERV1 -1881 5537 4990 2252 100 0 0 chrX 77243550 77243851 -85356079 - AluSc SINE Alu -8 301 1 5249 180 57 84 chrX 77243851 77245332 -85354598 - MER52A-int LTR ERV1 -2428 4990 968 842 129 13 45 chrX 77245338 77245493 -85354437 - MER52A-int LTR ERV1 -4807 1139 990 279 250 26 26 chrX 77245558 77245634 -85354296 - MER52A-int LTR ERV1 -5417 1788 1713 * 5195 164 27 29 chrX 77245632 77246571 -85353359 - MER52A-int LTR ERV1 -5532 1559 623 9304 166 33 4 chrX 77246571 77248091 -85351839 - MER52A-int LTR ERV1 -3826 3265 1702 3167 156 68 2 chrX 77248210 77248332 -85351598 - MER52A-int LTR ERV1 -6520 571 459 255 31 0 0 chrX 77248332 77248364 -85351566 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 3167 156 68 2 chrX 77248364 77248768 -85351162 - MER52A-int LTR ERV1 -6632 459 10 5835 230 62 40 chrX 77248776 77250439 -85349491 - MER52A LTR ERV1 0 1755 55 8037 245 18 96 chrX 77250699 77251395 -85348535 - L1PA13 LINE L1 -1209 5588 4839 1404 182 0 0 chrX 77251395 77251626 -85348304 - AluSq SINE Alu -82 231 1 8037 245 18 96 chrX 77251626 77255294 -85344636 - L1PA13 LINE L1 -1958 4839 1406 5738 167 24 6 chrX 77255277 77255566 -85344364 + L1PB1 LINE L1 4112 4395 -1787 * 207 0 0 0 chrX 77255566 77255589 -85344341 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5738 167 24 6 chrX 77255589 77257346 -85342584 + L1PB1 LINE L1 4395 6182 0 1658 321 26 48 chrX 77257356 77258275 -85341655 - L1PA13 LINE L1 -5364 1423 12 6435 91 20 4 chrX 77258295 77259612 -85340318 - L1PA10 LINE L1 0 6168 4834 4199 259 41 23 chrX 77259672 77261583 -85338347 - L1 LINE L1 -2445 5120 3155 1611 165 57 0 chrX 77261583 77261862 -85338068 - AluSx SINE Alu -17 295 1 4199 259 41 23 chrX 77261862 77262238 -85337692 - L1 LINE L1 -4410 3155 2787 6287 197 23 9 chrX 77262251 77263532 -85336398 - HSMAR2 DNA Mariner -2 1300 3 225 250 26 0 chrX 77263534 77263610 -85336320 - L1M2 LINE L1 -490 5801 5724 333 247 13 0 chrX 77263667 77263744 -85336186 - L1M2 LINE L1 -601 5711 5634 * 1676 258 76 10 chrX 77263743 77264463 -85335467 + L1M4 LINE L1 2546 3313 -2833 634 188 53 6 chrX 77264484 77264654 -85335276 + L1MA9 LINE L1 6133 6310 -2 1241 268 99 48 chrX 77264666 77265700 -85334230 - L1M4 LINE L1 -3592 3052 2072 2051 126 3 0 chrX 77265700 77266001 -85333929 - AluSx SINE Alu -10 302 1 1241 268 99 48 chrX 77266001 77266322 -85333608 - L1M4 LINE L1 -4572 2072 1769 279 0 0 0 chrX 77266322 77266353 -85333577 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1288 211 7 47 chrX 77266355 77266653 -85333277 - AluJb SINE Alu -23 289 4 1241 268 99 48 chrX 77266653 77267653 -85332277 - L1M4 LINE L1 -4875 1769 611 225 346 0 13 chrX 77268122 77268200 -85331730 - L1M4 LINE L1 -5814 751 675 719 333 75 61 chrX 77268233 77268884 -85331046 + L3 LINE CR1 744 1403 -174 767 260 15 25 chrX 77269210 77269414 -85330516 - MIR SINE MIR -12 250 49 291 357 63 21 chrX 77270086 77270229 -85329701 + MIR3 SINE MIR 44 192 -16 589 339 12 20 chrX 77270572 77270817 -85329113 - MIR SINE MIR 0 262 20 478 372 30 9 chrX 77270831 77271062 -85328868 - MIR SINE MIR 0 262 27 272 342 53 0 chrX 77271571 77271647 -85328283 - L2 LINE L2 -32 3281 3202 2246 104 3 0 chrX 77272014 77272313 -85327617 - AluSp SINE Alu -13 300 1 491 160 0 0 chrX 77272435 77272535 -85327395 + L1PA15 LINE L1 6066 6165 0 2539 263 41 29 chrX 77272671 77274454 -85325476 + L1M4 LINE L1 15 5881 -782 3315 163 2 27 chrX 77274464 77275101 -85324829 - L1P LINE L1 -4513 1633 1013 * 10162 84 2 4 chrX 77275099 77276503 -85323427 + L1PA16 LINE L1 3968 5368 -778 6521 66 2 0 chrX 77276500 77277331 -85322599 + L1PA6 LINE L1 5322 6154 0 * 3662 202 13 14 chrX 77277328 77278109 -85321821 + L1PA16 LINE L1 5385 6164 -2 * 1301 298 3 3 chrX 77278133 77278472 -85321458 + L1PA13 LINE L1 148 486 -6301 324 78 78 0 chrX 77278516 77278567 -85321363 + L1PA15-16 LINE L1 2548 2602 -4247 327 300 21 14 chrX 77278570 77278710 -85321220 + L1MB7 LINE L1 1514 1654 -4730 * 1581 165 24 51 chrX 77278699 77278794 -85321136 + L1MC/D LINE L1 5423 5519 -814 1325 62 51 31 chrX 77278794 77278989 -85320941 - L1PA8 LINE L1 -1 6171 5973 1581 165 24 51 chrX 77278989 77279227 -85320703 + L1MC/D LINE L1 5519 5747 -586 367 253 0 11 chrX 77279234 77279321 -85320609 + L1MB7 LINE L1 1640 1725 -4659 3478 238 73 111 chrX 77279383 77282320 -85317610 + L1MB7 LINE L1 1963 4807 -1575 * 7154 223 47 34 chrX 77282318 77284443 -85315487 + L1MB1 LINE L1 2731 4883 -1263 1221 268 0 0 chrX 77284453 77284729 -85315201 - MLT1A1 LTR MaLR -89 276 1 1509 200 13 1 chrX 77284734 77285049 -85314881 + L1MB1 LINE L1 5469 5793 -375 280 215 25 25 chrX 77285086 77285295 -85314635 + (TA)n Simple_repeat Simple_repeat 1 209 0 1714 205 33 16 chrX 77285305 77285671 -85314259 + L1MB1 LINE L1 5797 6168 0 1303 225 32 24 chrX 77285672 77286046 -85313884 + L1MB7 LINE L1 4785 5161 -1221 * 1438 176 9 116 chrX 77286043 77286476 -85313454 + L1MA7 LINE L1 5894 6280 -11 791 118 0 22 chrX 77286501 77286637 -85313293 - L1MA3 LINE L1 0 6305 6173 3033 240 34 21 chrX 77286687 77287921 -85312009 + L1MB7 LINE L1 5145 6399 -21 204 103 52 0 chrX 77287921 77287979 -85311951 + (TA)n Simple_repeat Simple_repeat 1 61 0 297 338 7 63 chrX 77288395 77288537 -85311393 - L2 LINE L2 -260 3053 2920 242 299 0 11 chrX 77288604 77288691 -85311239 - L1MEd LINE L1 -5046 1073 988 14969 240 29 20 chrX 77288898 77290397 -85309533 - L1PA15 LINE L1 -17 6799 5315 2092 133 0 34 chrX 77290397 77290720 -85309210 - AluSx SINE Alu 0 312 1 14969 240 29 20 chrX 77290720 77295913 -85304017 - L1PA15 LINE L1 -1501 5315 1 343 232 0 0 chrX 77296044 77296113 -85303817 + L1MA1 LINE L1 1529 1597 -5968 577 180 0 0 chrX 77296252 77296352 -85303578 + L1MA1 LINE L1 3997 4096 -3469 13372 208 22 21 chrX 77296353 77302320 -85297610 + L1PB1 LINE L1 661 6859 -8 271 23 70 0 chrX 77302327 77302370 -85297560 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 10794 172 20 20 chrX 77302394 77305923 -85294007 + L1MA1 LINE L1 4194 7721 0 5609 158 53 32 chrX 77305927 77307073 -85292857 + Tigger3b DNA MER2_type 61 1230 -1 320 264 0 0 chrX 77307085 77307157 -85292773 - Tigger5 DNA MER2_type -1 2322 2251 * 386 241 0 0 chrX 77307155 77307234 -85292696 + Tigger5 DNA MER2_type 2242 2320 -3 291 244 26 13 chrX 77307234 77307311 -85292619 - Tigger5 DNA MER2_type -2245 78 1 247 339 15 0 chrX 77307377 77307442 -85292488 + L2 LINE L2 3129 3194 -78 779 284 76 10 chrX 77307918 77308221 -85291709 - MER5C DNA MER1_type -1 323 1 1555 197 0 10 chrX 77308271 77308560 -85291370 - AluJb SINE Alu -26 286 1 373 281 196 26 chrX 77308567 77308720 -85291210 - MER5A DNA MER1_type -7 182 4 192 175 0 25 chrX 77308812 77308852 -85291078 + L2 LINE L2 3264 3302 -11 261 281 9 0 chrX 77308949 77309063 -85290867 - MER5C DNA MER1_type -43 281 167 422 290 16 8 chrX 77310204 77310328 -85289602 + L2 LINE L2 3186 3310 -3 684 190 110 0 chrX 77310649 77310812 -85289118 - L1MA10 LINE L1 -13 6321 6141 513 73 0 0 chrX 77310808 77310876 -85289054 - L1PA5 LINE L1 -226 5928 5861 * 1739 73 4 0 chrX 77310877 77311111 -85288819 + L1PA5 LINE L1 5920 6154 0 269 89 125 0 chrX 77311124 77311180 -85288750 - L1MB1 LINE L1 -13 6155 6093 * 2800 170 4 13 chrX 77311164 77311694 -85288236 + L1MB1 LINE L1 5529 6053 -136 265 200 0 43 chrX 77312177 77312247 -85287683 + L2 LINE L2 2842 2908 -364 267 210 74 0 chrX 77312255 77312336 -85287594 + L2 LINE L2 3090 3176 -137 685 309 82 0 chrX 77312350 77312570 -85287360 - MIR SINE MIR -5 257 20 422 276 26 9 chrX 77312580 77312696 -85287234 + L2 LINE L2 3192 3309 -4 180 0 0 0 chrX 77313388 77313408 -85286522 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2482 162 11 46 chrX 77313416 77313940 -85285990 - L1MA7 LINE L1 -9 6282 5777 1587 215 9 3 chrX 77313940 77314275 -85285655 + L1MA7 LINE L1 5437 5773 -518 3912 295 29 33 chrX 77314756 77316492 -85283438 + L1PBa LINE L1 3 1643 -5220 * 4998 222 28 19 chrX 77316463 77318947 -85280983 + L1MB1 LINE L1 823 3430 -3432 1216 238 22 22 chrX 77318947 77319312 -85280618 + L1 LINE L1 4364 4728 -1418 1238 205 17 78 chrX 77319482 77319828 -85280102 + L1MB1 LINE L1 4616 4940 -1263 1215 268 0 0 chrX 77319838 77320114 -85279816 - MLT1A1 LTR MaLR -89 276 1 1490 200 13 1 chrX 77320119 77320434 -85279496 + L1MB1 LINE L1 5526 5850 -375 280 215 25 25 chrX 77320471 77320680 -85279250 + (TA)n Simple_repeat Simple_repeat 1 209 0 1693 205 33 16 chrX 77320690 77321056 -85278874 + L1MB1 LINE L1 5854 6225 0 1269 225 32 24 chrX 77321057 77321431 -85278499 + L1MB7 LINE L1 4549 4925 -1221 * 1409 176 9 116 chrX 77321428 77321861 -85278069 + L1MA7 LINE L1 5894 6280 -11 789 118 0 22 chrX 77321886 77322022 -85277908 - L1MA3 LINE L1 0 6305 6173 2976 240 34 21 chrX 77322072 77323306 -85276624 + L1MB7 LINE L1 4909 6163 -21 204 103 52 0 chrX 77323306 77323364 -85276566 + (TA)n Simple_repeat Simple_repeat 2 62 0 301 338 7 63 chrX 77323780 77323922 -85276008 - L2 LINE L2 -260 3053 2920 308 276 73 68 chrX 77323981 77324173 -85275757 - L1MEc LINE L1 -5199 1197 1005 5034 161 23 4 chrX 77324283 77325773 -85274157 - L1PA15 LINE L1 -17 6148 4644 2332 106 3 0 chrX 77325776 77326087 -85273843 - AluSp SINE Alu -1 312 1 486 160 0 0 chrX 77326209 77326309 -85273621 + L1PA15 LINE L1 6066 6165 0 2452 263 41 29 chrX 77326445 77328228 -85271702 + L1M4 LINE L1 15 5881 -782 3312 163 2 27 chrX 77328238 77328875 -85271055 - L1PA15 LINE L1 -4513 1633 1013 * 10200 82 2 4 chrX 77328873 77330277 -85269653 + L1PA6 LINE L1 3968 5368 -778 4734 65 3 0 chrX 77330274 77330876 -85269054 + L1PA6 LINE L1 5322 5925 -229 * 464 213 0 0 chrX 77331119 77331213 -85268717 - MER92B LTR ERV1 0 636 543 1177 215 124 43 chrX 77331232 77331604 -85268326 - MER92B LTR ERV1 -233 403 2 2191 99 7 10 chrX 77331788 77332090 -85267840 + AluSx SINE Alu 1 301 -11 244 263 26 9 chrX 77332122 77332236 -85267694 + (TA)n Simple_repeat Simple_repeat 2 117 0 214 300 146 27 chrX 77332247 77332357 -85267573 - L3 LINE CR1 -224 1353 1231 5326 162 17 9 chrX 77333182 77334423 -85265507 + L1PB3 LINE L1 4904 6153 -1 7412 210 60 59 chrX 77334438 77335024 -85264906 + L1MA2 LINE L1 23 607 -6958 1771 37 0 0 chrX 77335024 77335238 -85264692 - L1PA4 LINE L1 -3 6152 5939 7412 210 60 59 chrX 77335238 77336478 -85263452 + L1MA2 LINE L1 607 1851 -5714 2190 98 0 3 chrX 77336483 77336791 -85263139 - AluY SINE Alu 0 307 1 912 161 6 0 chrX 77336815 77336976 -85262954 + L1MA2 LINE L1 2835 2996 -4569 12841 205 27 81 chrX 77336984 77339981 -85259949 + L1PA11 LINE L1 2 3159 -3666 371 20 0 20 chrX 77339981 77340030 -85259900 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 12841 205 27 81 chrX 77340030 77343275 -85256655 + L1PA11 LINE L1 3159 5853 -972 2217 125 0 3 chrX 77343275 77343586 -85256344 + AluSx SINE Alu 1 310 -2 12841 205 27 81 chrX 77343586 77344504 -85255426 + L1PA11 LINE L1 5853 6819 -6 440 180 20 40 chrX 77344507 77344607 -85255323 + MLT1C LTR MaLR 370 467 0 1778 148 32 21 chrX 77345339 77345711 -85254219 + L1MA2 LINE L1 2977 3352 -4213 * 6322 164 14 14 chrX 77345710 77345825 -85254105 + L1MA2 LINE L1 6102 6216 -1507 2392 97 0 3 chrX 77345825 77346134 -85253796 + AluY SINE Alu 1 308 -3 6322 164 14 14 chrX 77346134 77347646 -85252284 + L1MA2 LINE L1 6216 7723 0 517 331 52 20 chrX 77349121 77349372 -85250558 + MIR SINE MIR 3 261 -1 3072 97 39 7 chrX 77349616 77350150 -85249780 + L1PA11 LINE L1 5515 6173 -1 2289 259 35 10 chrX 77350541 77351263 -85248667 - L1MC4a LINE L1 0 7808 7069 3010 115 7 0 chrX 77351270 77351706 -85248224 - L1PA13 LINE L1 -280 5883 5445 24 0 0 0 chrX 77351739 77351763 -85248167 + AT_rich Low_complexity Low_complexity 1 24 0 1708 166 28 3 chrX 77351811 77352095 -85247835 - AluJo SINE Alu -21 291 1 24 0 0 0 chrX 77353158 77353182 -85246748 + AT_rich Low_complexity Low_complexity 1 24 0 358 272 173 29 chrX 77355544 77355717 -85244213 - MIR SINE MIR -12 250 53 317 325 17 0 chrX 77356007 77356127 -85243803 + MIR SINE MIR 141 262 0 246 255 142 9 chrX 77357247 77357353 -85242577 + MIR SINE MIR 35 154 -108 23 54 0 0 chrX 77357392 77357429 -85242501 + AT_rich Low_complexity Low_complexity 1 37 0 285 146 78 78 chrX 77357440 77357543 -85242387 + L1MC5 LINE L1 7810 7912 -49 27 29 0 0 chrX 77357979 77358013 -85241917 + AT_rich Low_complexity Low_complexity 1 34 0 20417 42 2 2 chrX 77358501 77361816 -85238114 - L1PA4 LINE L1 -3 6152 2836 13311 80 2 1 chrX 77361816 77363570 -85236360 - L1PA4 LINE L1 -4383 1763 7 401 267 99 15 chrX 77363721 77363852 -85236078 + L2 LINE L2 3172 3313 0 41978 61 5 0 chrX 77363888 77370015 -85229915 + L1PA5 LINE L1 2 6154 0 23 0 0 0 chrX 77370475 77370498 -85229432 + AT_rich Low_complexity Low_complexity 1 23 0 1947 149 33 51 chrX 77370538 77370987 -85228943 - L1MA8 LINE L1 -6 6285 5845 16334 49 8 1 chrX 77371087 77373612 -85226318 + L1PA3 LINE L1 3296 5839 -316 944 68 15 8 chrX 77373712 77373844 -85226086 + L1PA3 LINE L1 6020 6152 -3 375 208 0 0 chrX 77373849 77373926 -85226004 + L1 LINE L1 3868 3944 -2202 * 5992 79 12 0 chrX 77373922 77374723 -85225207 - L1PA7 LINE L1 -3 6151 5341 2007 230 8 12 chrX 77374735 77375249 -85224681 + L1 LINE L1 3929 4440 -1706 1720 286 51 63 chrX 77375243 77376158 -85223772 + L1PA12 LINE L1 11 914 -6667 * 2144 235 108 17 chrX 77376164 77376828 -85223102 + MER50 LTR ERV1 10 734 0 10400 247 18 19 chrX 77376881 77380508 -85219422 + L1PA12 LINE L1 2107 5728 -1856 301 257 45 117 chrX 77380703 77380772 -85219158 - MIR SINE MIR -6 256 184 2084 123 0 0 chrX 77380772 77381057 -85218873 - AluSg SINE Alu -25 285 1 301 257 45 117 chrX 77381057 77381166 -85218764 - MIR SINE MIR -78 184 91 1534 206 18 0 chrX 77381715 77382001 -85217929 + AluJo SINE Alu 1 291 -21 7678 21 0 6 chrX 77382246 77383326 -85216604 + L1PA3 LINE L1 5081 6155 0 812 325 67 20 chrX 77384071 77384212 -85215718 - L2 LINE L2 -2 3311 3178 1503 181 83 28 chrX 77384212 77384537 -85215393 - MER2 DNA MER2_type -1 343 1 812 325 67 20 chrX 77384537 77384861 -85215069 - L2 LINE L2 -135 3178 2788 2408 78 3 0 chrX 77384861 77385156 -85214774 + AluY SINE Alu 1 296 -15 812 325 67 20 chrX 77385156 77385365 -85214565 - L2 LINE L2 -525 2788 2590 997 216 27 22 chrX 77385409 77385631 -85214299 - MLT1A1 LTR MaLR 0 365 143 1900 160 12 32 chrX 77385635 77386047 -85213883 - L1MA7 LINE L1 0 6291 5888 536 153 41 0 chrX 77386052 77386150 -85213780 - L1MA7 LINE L1 -540 5794 5693 621 171 0 0 chrX 77386152 77386257 -85213673 + L1MA7 LINE L1 5784 5888 -403 489 244 52 0 chrX 77386338 77386453 -85213477 - MER94 DNA DNA -10 124 4 631 229 50 50 chrX 77386995 77387196 -85212734 + MIR3 SINE MIR 3 203 -5 22 56 0 0 chrX 77387577 77387613 -85212317 + AT_rich Low_complexity Low_complexity 1 36 0 501 341 11 11 chrX 77388022 77388204 -85211726 + MER5A DNA MER1_type 8 189 0 230 222 0 56 chrX 77388372 77388426 -85211504 - L2 LINE L2 -12 3260 3210 621 241 26 8 chrX 77388478 77388647 -85211283 - MIR SINE MIR -66 196 22 202 331 97 32 chrX 77388621 77388745 -85211185 + L2 LINE L2 3139 3270 -2 * 2524 286 52 16 chrX 77390145 77391243 -85208687 - L1M4 LINE L1 -2146 4000 2864 2384 148 46 4 chrX 77391244 77391698 -85208232 + L1 LINE L1 3844 4316 -1830 17317 172 18 37 chrX 77391739 77393486 -85206444 + L1MA2 LINE L1 13 1670 -5895 318 26 0 0 chrX 77393486 77393525 -85206405 + (GA)n Simple_repeat Simple_repeat 2 40 0 17317 172 18 37 chrX 77393525 77395130 -85204800 + L1MA2 LINE L1 1670 3303 -4262 1703 160 10 2 chrX 77395136 77396350 -85203580 + L1MA2 LINE L1 6423 7716 -7 22 0 0 0 chrX 77396352 77396374 -85203556 + AT_rich Low_complexity Low_complexity 1 22 0 875 144 29 6 chrX 77396374 77396548 -85203382 + L1 LINE L1 4295 4472 -1674 458 134 0 0 chrX 77396537 77396604 -85203326 - L1PA15 LINE L1 -88 6077 6011 * 335 213 0 0 chrX 77396601 77396676 -85203254 + L1PA15 LINE L1 6087 6161 -4 * 788 168 48 0 chrX 77396678 77396845 -85203085 + L1MA8 LINE L1 6117 6291 0 1036 246 141 14 chrX 77396854 77397288 -85202642 - L1M4 LINE L1 -3267 3377 2889 2494 198 28 68 chrX 77397290 77397406 -85202524 - L1M4 LINE L1 -4997 1545 1426 2623 7 0 0 chrX 77397406 77397730 -85202200 + AluYb8 SINE Alu 1 324 0 2494 198 28 68 chrX 77397730 77398351 -85201579 - L1M4 LINE L1 -5116 1426 836 1587 170 45 68 chrX 77399186 77399568 -85200362 + THE1C LTR MaLR 1 373 -2 567 141 20 0 chrX 77399570 77399669 -85200261 + THE1C-int LTR MaLR 1 101 -1479 * 6897 155 11 17 chrX 77399658 77400797 -85199133 + THE1C-int LTR MaLR 448 1580 0 1353 207 42 68 chrX 77400800 77401182 -85198748 + THE1C LTR MaLR 4 375 0 460 330 11 11 chrX 77401240 77401428 -85198502 - MIR SINE MIR -10 252 65 280 265 15 0 chrX 77401883 77401951 -85197979 + L2 LINE L2 2611 2679 -635 311 198 35 23 chrX 77401971 77402057 -85197873 + L2 LINE L2 2828 2914 -358 28 71 0 0 chrX 77402186 77402242 -85197688 + AT_rich Low_complexity Low_complexity 1 56 0 261 229 104 21 chrX 77402300 77402396 -85197534 - MIR SINE MIR -71 191 88 600 302 31 47 chrX 77402511 77402692 -85197238 + MIR SINE MIR 7 184 -78 5567 135 7 7 chrX 77402692 77404297 -85195633 + L1PA13 LINE L1 4542 6159 -4 600 302 31 47 chrX 77404297 77404373 -85195557 + MIR SINE MIR 184 260 -2 535 312 5 49 chrX 77404907 77405112 -85194818 - MIR SINE MIR -17 245 50 647 219 0 0 chrX 77405382 77405528 -85194402 + L1M4 LINE L1 5165 5310 -836 671 295 93 5 chrX 77405532 77405725 -85194205 - L2 LINE L2 -363 2951 2742 194 352 80 12 chrX 77405776 77405938 -85193992 - MIR SINE MIR -42 220 48 1571 172 16 22 chrX 77405996 77406315 -85193615 + Charlie4a DNA MER1_type 14 330 -178 564 212 85 18 chrX 77406577 77406742 -85193188 + Charlie4a DNA MER1_type 333 508 0 1073 242 22 54 chrX 77406743 77407057 -85192873 - L2 LINE L2 -566 2748 2445 407 309 68 0 chrX 77408737 77408899 -85191031 + L2 LINE L2 2520 2692 -622 379 173 141 136 chrX 77409186 77409377 -85190553 + L2 LINE L2 3121 3312 -1 207 0 0 0 chrX 77409577 77409600 -85190330 + (A)n Simple_repeat Simple_repeat 1 23 0 1792 53 0 0 chrX 77410352 77410579 -85189351 + L1PA4 LINE L1 5928 6154 -1 1904 123 49 3 chrX 77410887 77411172 -85188758 - AluSx SINE Alu -14 298 1 276 102 0 0 chrX 77411527 77411576 -85188354 + (TC)n Simple_repeat Simple_repeat 2 50 0 327 49 0 0 chrX 77411576 77411617 -85188313 + (CA)n Simple_repeat Simple_repeat 1 41 0 492 304 38 16 chrX 77411827 77412011 -85187919 + MER5A DNA MER1_type 1 188 -1 276 393 0 0 chrX 77412053 77412160 -85187770 - L2 LINE L2 -622 2692 2586 26 30 0 0 chrX 77412270 77412303 -85187627 + AT_rich Low_complexity Low_complexity 1 33 0 612 147 9 0 chrX 77412901 77413010 -85186920 + L1PA13 LINE L1 6050 6159 -4 234 0 0 0 chrX 77413747 77413773 -85186157 + (TAA)n Simple_repeat Simple_repeat 3 28 0 237 265 86 26 chrX 77413783 77413900 -85186030 - MIR SINE MIR -65 197 74 203 250 0 0 chrX 77414048 77414088 -85185842 + (CA)n Simple_repeat Simple_repeat 2 41 0 976 213 38 5 chrX 77414713 77414924 -85185006 - MER20 DNA MER1_type 0 219 2 204 40 0 0 chrX 77416302 77416327 -85183603 + (A)n Simple_repeat Simple_repeat 1 25 0 29 47 0 0 chrX 77418400 77418443 -85181487 + AT_rich Low_complexity Low_complexity 1 43 0 228 122 0 0 chrX 77420144 77420185 -85179745 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 654 310 96 8 chrX 77421142 77421381 -85178549 + MIR SINE MIR 2 261 -1 2157 110 3 7 chrX 77421621 77421930 -85178000 + AluY SINE Alu 1 308 -3 463 262 41 64 chrX 77422280 77422452 -85177478 - MIR SINE MIR -2 260 93 213 39 0 0 chrX 77422971 77422997 -85176933 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1717 193 0 3 chrX 77423721 77424017 -85175913 - AluJb SINE Alu -17 295 1 508 338 154 16 chrX 77424132 77424514 -85175416 + L3 LINE CR1 410 844 -733 2065 100 11 0 chrX 77424588 77424867 -85175063 - AluSx SINE Alu -30 282 1 659 301 56 1 chrX 77424971 77425185 -85174745 + MIR SINE MIR 34 256 -6 432 0 0 0 chrX 77425215 77425263 -85174667 + (TA)n Simple_repeat Simple_repeat 2 49 0 689 317 163 42 chrX 77425279 77425758 -85174172 + L3 LINE CR1 1038 1574 -3 206 349 24 12 chrX 77425989 77426072 -85173858 + MIR3 SINE MIR 106 189 -19 21 36 0 0 chrX 77427929 77427957 -85171973 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 77428499 77428527 -85171403 + AT_rich Low_complexity Low_complexity 1 28 0 225 94 0 0 chrX 77428869 77428901 -85171029 + (T)n Simple_repeat Simple_repeat 1 32 0 292 313 82 10 chrX 77431293 77431488 -85168442 + L1MC4 LINE L1 7267 7475 -567 259 322 23 23 chrX 77431485 77431656 -85168274 + L1MC5 LINE L1 7317 7487 -474 * 311 296 89 74 chrX 77431735 77431870 -85168060 - MIR3 SINE MIR -49 159 23 237 239 0 56 chrX 77432251 77432322 -85167608 + MIR SINE MIR 74 140 -122 2279 87 7 3 chrX 77434326 77434625 -85165305 - AluSq SINE Alu -11 302 3 322 289 85 20 chrX 77435032 77435233 -85164697 + L1MC5 LINE L1 7719 7932 -29 221 289 121 0 chrX 77435337 77435420 -85164510 - MIR SINE MIR -50 212 120 303 109 0 0 chrX 77435756 77435802 -85164128 - MER53 DNA DNA -142 47 2 23 0 0 0 chrX 77436031 77436054 -85163876 + AT_rich Low_complexity Low_complexity 1 23 0 707 152 242 114 chrX 77436191 77436629 -85163301 - AluJb SINE Alu 0 472 1 2139 263 36 8 chrX 77437926 77438516 -85161414 + Charlie1a DNA MER1_type 3 608 -847 1403 187 66 0 chrX 77438534 77438673 -85161257 - AluJb SINE Alu -37 275 147 215 29 88 0 chrX 77438673 77438707 -85161223 + T-rich Low_complexity Low_complexity 2 38 0 1403 187 66 0 chrX 77438707 77438824 -85161106 - AluJb SINE Alu -165 147 2 1125 185 42 15 chrX 77438845 77439081 -85160849 + Charlie1a DNA MER1_type 913 1155 -300 1417 247 64 8 chrX 77439081 77439470 -85160460 - LTR52 LTR ERVL -3 418 8 607 131 104 33 chrX 77439477 77439660 -85160270 + Charlie1a DNA MER1_type 1145 1340 -115 28 0 0 0 chrX 77439666 77439694 -85160236 + AT_rich Low_complexity Low_complexity 1 28 0 8047 173 22 22 chrX 77439694 77440256 -85159674 + L1MA8 LINE L1 3649 4210 -2081 2103 141 0 0 chrX 77440256 77440553 -85159377 - AluSx SINE Alu -15 297 1 8047 173 22 22 chrX 77440553 77442624 -85157306 + L1MA8 LINE L1 4210 6285 -6 23 0 0 0 chrX 77442664 77442687 -85157243 + AT_rich Low_complexity Low_complexity 1 23 0 18385 55 2 0 chrX 77443147 77446284 -85153646 - L1PA5 LINE L1 0 6154 3013 241 268 0 14 chrX 77446567 77446638 -85153292 + L1MC/D LINE L1 5738 5807 -2001 506 198 55 0 chrX 77446891 77446982 -85152948 + L1PA16 LINE L1 5993 6088 -78 806 236 133 9 chrX 77447009 77447102 -85152828 + AluSq SINE Alu 13 93 -220 201 94 0 0 chrX 77447102 77447134 -85152796 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 806 236 133 9 chrX 77447134 77447265 -85152665 + AluSq SINE Alu 93 265 -48 1112 244 4 0 chrX 77447269 77447515 -85152415 - AluJb SINE Alu -55 257 11 5699 76 2 12 chrX 77447537 77448656 -85151274 + L1PA7 LINE L1 4903 6009 -145 4964 144 7 1 chrX 77448641 77449492 -85150438 - L1P LINE L1 -1096 5050 4195 * 6972 138 8 18 chrX 77449493 77450693 -85149237 + L1P LINE L1 2395 3582 -2564 359 257 124 29 chrX 77450703 77450808 -85149122 - MSTB LTR MaLR -282 144 30 2657 264 48 8 chrX 77450813 77451696 -85148234 + L1M3 LINE L1 4506 5426 -743 23 33 0 0 chrX 77451696 77451726 -85148204 + AT_rich Low_complexity Low_complexity 1 30 0 3138 215 9 14 chrX 77451729 77452806 -85147124 - L1M2 LINE L1 -679 5633 4561 903 245 61 125 chrX 77452806 77453263 -85146667 - MLT1A1 LTR MaLR 0 365 1 2850 192 61 10 chrX 77453266 77453939 -85145991 - L1M2 LINE L1 -1584 4562 3856 1914 197 24 65 chrX 77453941 77454449 -85145481 + L1MA9 LINE L1 5627 6113 -199 519 178 64 85 chrX 77454486 77454695 -85145235 + L1MA9 LINE L1 6067 6272 -27 691 200 46 41 chrX 77454705 77454788 -85145142 + L1M3 LINE L1 5486 5567 -604 848 48 0 0 chrX 77454788 77454891 -85145039 + L1PA7 LINE L1 6051 6154 0 691 200 46 41 chrX 77454891 77455002 -85144928 + L1M3 LINE L1 5567 5681 -490 1312 162 26 15 chrX 77455006 77455271 -85144659 - L1MB2 LINE L1 -8 6163 5896 23 33 0 0 chrX 77455427 77455457 -85144473 + AT_rich Low_complexity Low_complexity 1 30 0 354 250 23 0 chrX 77456201 77456289 -85143641 - MIR SINE MIR -24 238 149 458 187 22 0 chrX 77456494 77456585 -85143345 + MLT1B LTR MaLR 3 95 -295 266 340 28 19 chrX 77456649 77456755 -85143175 + MER5A DNA MER1_type 54 160 -29 194 209 23 0 chrX 77456791 77456834 -85143096 + MER5B DNA MER1_type 1 44 -134 237 151 0 0 chrX 77456881 77456934 -85142996 + (TTGG)n Simple_repeat Simple_repeat 3 55 0 13021 196 19 20 chrX 77456953 77458232 -85141698 - L1PB1 LINE L1 -4 6863 5585 1412 82 0 0 chrX 77458232 77458426 -85141504 + L1PA6 LINE L1 5958 6151 -3 13021 196 19 20 chrX 77458426 77458923 -85141007 - L1PB1 LINE L1 -1282 5585 5089 195 100 0 0 chrX 77458923 77458953 -85140977 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 13021 196 19 20 chrX 77458953 77461136 -85138794 - L1PB1 LINE L1 -1778 5089 2907 1521 193 19 37 chrX 77461140 77461462 -85138468 + MLT1B LTR MaLR 73 388 -2 3369 155 19 2 chrX 77461583 77462175 -85137755 + LTR43 LTR ERV1 1 602 0 12308 67 3 13 chrX 77462188 77464570 -85135360 + L1PA6 LINE L1 3771 6143 -11 2000 189 28 33 chrX 77464583 77465169 -85134761 + LTR43-int LTR ERV1 1 624 -4174 16802 120 28 4 chrX 77465174 77467749 -85132181 + L1PBa LINE L1 1 2636 -4227 321 154 0 0 chrX 77467744 77467796 -85132134 + L1 LINE L1 4771 4822 -1324 * 1031 205 5 9 chrX 77467807 77468022 -85131908 + L1PB1 LINE L1 3 216 -6647 * 2599 116 5 5 chrX 77467999 77468387 -85131543 + L1PB1 LINE L1 1392 1779 -5084 929 108 40 20 chrX 77468370 77468518 -85131412 - L1PB1 LINE L1 -4335 2528 2378 * 2282 172 42 7 chrX 77468513 77469338 -85130592 + L1PB1 LINE L1 2478 3384 -3478 * 6028 152 19 2 chrX 77469316 77470862 -85129068 + L1PB1 LINE L1 5289 6860 -7 19904 181 46 22 chrX 77470868 77474951 -85124979 + LTR43-int LTR ERV1 615 4798 0 3827 135 14 0 chrX 77474951 77475545 -85124385 + LTR43 LTR ERV1 1 602 0 22 0 0 0 chrX 77475545 77475567 -85124363 + AT_rich Low_complexity Low_complexity 1 22 0 408 134 0 0 chrX 77475633 77475700 -85124230 - L1MA1 LINE L1 -2 6300 6234 352 235 0 12 chrX 77476150 77476231 -85123699 + L1ME LINE L1 5558 5637 -529 * 1980 214 26 9 chrX 77476223 77476680 -85123250 - L1 LINE L1 -1991 4155 3691 1701 239 38 6 chrX 77476698 77477204 -85122726 + L1MA3 LINE L1 4040 4561 -1585 1032 247 32 2 chrX 77477207 77477572 -85122358 + L1PA15-16 LINE L1 3 1563 -5286 * 11606 229 34 30 chrX 77477558 77478015 -85121915 + L1PB4 LINE L1 1336 1790 -5069 2852 7 0 0 chrX 77478015 77478323 -85121607 + AluYa5 SINE Alu 1 308 -3 11606 229 34 30 chrX 77478323 77478805 -85121125 + L1PB4 LINE L1 1790 2269 -4590 707 120 0 0 chrX 77478805 77478905 -85121025 + AluSp/q SINE Alu 194 293 -20 225 0 0 0 chrX 77478905 77478930 -85121000 + (TA)n Simple_repeat Simple_repeat 1 25 0 11606 229 34 30 chrX 77478930 77483360 -85116570 + L1PB4 LINE L1 2268 6857 -2 2803 212 26 47 chrX 77483364 77483976 -85115954 + L1MA3 LINE L1 4549 5172 -999 1687 158 25 0 chrX 77483976 77484293 -85115637 + L1MA3 LINE L1 5981 6305 0 2803 212 26 47 chrX 77484293 77484689 -85115241 + L1MA3 LINE L1 5172 5525 -646 253 0 54 0 chrX 77484689 77484726 -85115204 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2803 212 26 47 chrX 77484726 77484901 -85115029 + L1MA3 LINE L1 5525 5702 -469 511 343 25 12 chrX 77484980 77485222 -85114708 + MIR SINE MIR 6 250 -12 2478 178 9 30 chrX 77485667 77486133 -85113797 + MSTB2 LTR MaLR 1 456 -1 577 272 31 6 chrX 77486483 77486645 -85113285 + MLT1J2 LTR MaLR 15 180 -270 440 206 0 20 chrX 77486650 77486752 -85113178 + L1MC/D LINE L1 5584 5683 -559 422 294 185 14 chrX 77486771 77486982 -85112948 + MLT1J2 LTR MaLR 198 444 -6 3771 190 22 126 chrX 77487155 77488514 -85111416 + L1MA3 LINE L1 3205 4422 -1724 21 0 0 0 chrX 77488576 77488597 -85111333 + AT_rich Low_complexity Low_complexity 1 21 0 37015 67 17 1 chrX 77488597 77494663 -85105267 + L1PA5 LINE L1 5 6152 -2 489 183 0 0 chrX 77494677 77494759 -85105171 - MER58 DNA MER1_type -93 248 167 5723 182 19 12 chrX 77494819 77495858 -85104072 + L1MA3 LINE L1 4435 5466 -839 2197 105 7 0 chrX 77495858 77496164 -85103766 - AluSp SINE Alu -5 308 1 5723 182 19 12 chrX 77496164 77496744 -85103186 + L1MA3 LINE L1 5466 6069 -236 225 65 0 0 chrX 77496744 77496775 -85103155 + (TTAG)n Simple_repeat Simple_repeat 1 31 0 5723 182 19 12 chrX 77496775 77497014 -85102916 + L1MA3 LINE L1 6069 6305 0 11593 215 36 12 chrX 77500013 77502994 -85096936 + L1PA13 LINE L1 1 3059 -3738 2221 162 46 12 chrX 77502994 77503408 -85096522 + MSTA LTR MaLR 1 428 0 8860 193 16 13 chrX 77503408 77503488 -85096442 + MSTA-int LTR MaLR 1 79 -1572 2082 155 131 8 chrX 77503488 77503869 -85096061 + MSTA LTR MaLR 1 428 0 8860 193 16 13 chrX 77503869 77505434 -85094496 + MSTA-int LTR MaLR 79 1651 0 * 12447 208 22 16 chrX 77505434 77505559 -85094371 + L1P LINE L1 2284 2407 -3739 2195 171 41 7 chrX 77505559 77505973 -85093957 + MSTA LTR MaLR 1 428 0 12447 208 22 16 chrX 77505973 77508753 -85091177 + L1P LINE L1 2407 5207 -939 6881 165 10 9 chrX 77508747 77511102 -85088828 + L1MA1 LINE L1 3936 6297 -5 * 35 0 0 0 chrX 77511102 77511137 -85088793 + AT_rich Low_complexity Low_complexity 1 35 0 4073 138 25 7 chrX 77511139 77511849 -85088081 + L1MA3 LINE L1 5476 6198 -107 * 25131 108 11 25 chrX 77511844 77513454 -85086476 - L1P3 LINE L1 -1494 4967 3336 8801 50 3 0 chrX 77513454 77514522 -85085408 + MER11C LTR ERVK 1 1071 0 25131 108 11 25 chrX 77514522 77517203 -85082727 - L1P3 LINE L1 -3125 3336 730 14981 208 22 21 chrX 77517202 77521387 -85078543 - L1P3 LINE L1 -2186 4275 10 * 1727 175 28 6 chrX 77521395 77521758 -85078172 - L1P4 LINE L1 -681 5484 5130 1959 91 4 18 chrX 77521758 77522033 -85077897 + AluSc SINE Alu 1 271 -38 216 0 0 0 chrX 77522036 77522060 -85077870 + (TC)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chrX 77522059 77522082 -85077848 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 1727 175 28 6 chrX 77522060 77522265 -85077665 - L1P4 LINE L1 -1036 5129 4918 570 183 30 8 chrX 77522687 77522818 -85077112 + L1MA7 LINE L1 6155 6288 -3 7200 50 0 0 chrX 77523200 77524539 -85075391 + L1PA4 LINE L1 4813 6151 -4 3557 54 0 0 chrX 77525109 77525551 -85074379 - L1PA5 LINE L1 -5 6149 5708 586 272 90 87 chrX 77525940 77526308 -85073622 - L3 LINE CR1 -75 1502 1134 189 375 38 0 chrX 77526369 77526449 -85073481 - L3 LINE CR1 -442 1135 1053 2079 141 36 0 chrX 77526921 77527270 -85072660 - L1PB2 LINE L1 -1 6150 5786 342 0 0 0 chrX 77527270 77527308 -85072622 + (TG)n Simple_repeat Simple_repeat 2 39 0 2079 141 36 0 chrX 77527308 77527320 -85072610 - L1PB2 LINE L1 -365 5786 5776 309 169 0 0 chrX 77527320 77527379 -85072551 + (TA)n Simple_repeat Simple_repeat 1 59 0 2060 102 29 0 chrX 77527379 77527693 -85072237 - L1PB2 LINE L1 -360 5791 5469 * 3535 176 29 15 chrX 77527690 77528376 -85071554 + L1PBb LINE L1 361 1056 -5148 14045 187 25 10 chrX 77528838 77533897 -85066033 - L1 LINE L1 -2199 5366 124 198 0 0 0 chrX 77534573 77534595 -85065335 + (TA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chrX 77536230 77536253 -85063677 + AT_rich Low_complexity Low_complexity 1 23 0 234 265 273 15 chrX 77536836 77536968 -85062962 - MER5A DNA MER1_type -20 169 4 744 195 81 85 chrX 77536981 77537217 -85062713 + MER8 DNA MER2_type 4 238 -1 261 0 0 0 chrX 77537235 77537264 -85062666 + (CA)n Simple_repeat Simple_repeat 2 30 0 200 289 0 56 chrX 77537265 77537355 -85062575 + MIR SINE MIR 104 188 -74 253 339 116 36 chrX 77537419 77537531 -85062399 - L2 LINE L2 -2 3270 3150 2069 218 14 12 chrX 77537637 77538142 -85061788 + MER63C DNA MER1_type 9 514 -416 792 266 121 0 chrX 77538153 77538352 -85061578 - MER58A DNA MER1_type 0 224 2 * 1285 209 76 52 chrX 77538352 77538756 -85061174 + MER63C DNA MER1_type 517 930 0 670 155 0 0 chrX 77539069 77539172 -85060758 + FLAM_C SINE Alu 11 113 -30 5189 154 39 4 chrX 77539174 77540029 -85059901 + L1PB2 LINE L1 4891 5805 -346 216 67 0 0 chrX 77540029 77540059 -85059871 + (CA)n Simple_repeat Simple_repeat 2 31 0 5189 154 39 4 chrX 77540059 77540361 -85059569 + L1PB2 LINE L1 5805 6095 -56 1204 41 0 0 chrX 77540358 77540504 -85059426 + L1PA5 LINE L1 6002 6147 -7 * 368 70 18 0 chrX 77540554 77540611 -85059319 + L1PB2 LINE L1 6090 6147 -4 917 170 54 0 chrX 77540618 77540791 -85059139 + FRAM SINE Alu 1 173 0 267 135 0 0 chrX 77541550 77541587 -85058343 - U2 snRNA snRNA -151 37 1 32 57 0 0 chrX 77541590 77541643 -85058287 + AT_rich Low_complexity Low_complexity 1 53 0 261 369 50 20 chrX 77542109 77542307 -85057623 + L2 LINE L2 2583 2786 -528 2529 36 0 13 chrX 77542731 77543037 -85056893 + AluY SINE Alu 1 302 -9 292 303 23 45 chrX 77543041 77543173 -85056757 + MIR SINE MIR 8 136 -126 1689 189 0 13 chrX 77543428 77543729 -85056201 + AluJb SINE Alu 1 297 -15 773 182 8 0 chrX 77543747 77543879 -85056051 + FLAM_A SINE Alu 1 133 0 416 315 67 29 chrX 77545809 77546361 -85053569 + L1MEd LINE L1 662 1234 -4971 24 0 0 0 chrX 77546490 77546514 -85053416 + AT_rich Low_complexity Low_complexity 1 24 0 4732 45 3 0 chrX 77546617 77547193 -85052737 - L1PA5 LINE L1 -1 6153 5576 376 269 77 23 chrX 77547201 77547322 -85052608 + L1MEd LINE L1 1514 1644 -4752 2280 96 3 16 chrX 77547322 77547634 -85052296 + AluY SINE Alu 1 308 -3 22 0 0 0 chrX 77547730 77547752 -85052178 + AT_rich Low_complexity Low_complexity 1 22 0 254 196 36 0 chrX 77547859 77547915 -85052015 + GA-rich Low_complexity Low_complexity 1 58 0 6077 81 8 23 chrX 77548047 77548903 -85051027 - L1PA8A LINE L1 -1 6130 5288 1334 288 85 32 chrX 77548922 77550536 -85049394 + L1MEd LINE L1 2072 3745 -2470 460 323 81 65 chrX 77550542 77551000 -85048930 + L1M3c LINE L1 3 467 -5674 496 266 30 30 chrX 77551292 77551495 -85048435 + L1M3c LINE L1 898 1100 -5041 * 4283 149 18 6 chrX 77551478 77552191 -85047739 - L1PA16 LINE L1 -113 6053 5332 661 167 0 0 chrX 77552191 77552303 -85047627 + L1PA16 LINE L1 6049 6162 -4 2562 269 118 22 chrX 77552674 77554121 -85045809 + L1M4c LINE L1 853 2437 -3947 1079 223 0 4 chrX 77554147 77554376 -85045554 + MER46A DNA MER2_type 8 235 -1 725 256 14 5 chrX 77554391 77554614 -85045316 + L1M4c LINE L1 2470 2694 -3688 5181 230 26 14 chrX 77554620 77556649 -85043281 + L1PA15 LINE L1 1245 3308 -3489 9020 191 41 34 chrX 77556651 77559941 -85039989 + L1PA15 LINE L1 3491 6799 -17 2097 252 47 62 chrX 77559937 77560123 -85039807 + L1M4c LINE L1 2680 2867 -3515 * 1768 173 3 0 chrX 77560123 77560437 -85039493 + AluJb SINE Alu 1 315 0 2097 252 47 62 chrX 77560437 77561238 -85038692 + L1M4c LINE L1 2867 3653 -2729 272 213 0 16 chrX 77561246 77561307 -85038623 - L1M4 LINE L1 -2059 4087 4028 1689 167 42 26 chrX 77561312 77561618 -85038312 - THE1B LTR MaLR -2 362 52 1319 199 85 3 chrX 77561631 77561972 -85037958 + L1M4c LINE L1 3682 4050 -2332 913 221 5 5 chrX 77561993 77562197 -85037733 + L1MB1 LINE L1 5959 6162 -6 4231 214 44 18 chrX 77562280 77563207 -85036723 + L1MA4 LINE L1 9 959 -4369 280 0 0 48 chrX 77563210 77563252 -85036678 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6330 221 30 4 chrX 77563253 77564761 -85035169 - L1 LINE L1 -1751 4395 2849 234 234 0 0 chrX 77564791 77564838 -85035092 - L1 LINE L1 -1935 4211 4165 1207 122 16 0 chrX 77564849 77565038 -85034892 + L1PB2 LINE L1 5959 6150 -1 6149 210 25 22 chrX 77565064 77569122 -85030808 + L1MA4 LINE L1 953 6200 -282 356 167 48 0 chrX 77569129 77569213 -85030717 + L1MB3 LINE L1 6087 6174 -9 1336 13 0 0 chrX 77569217 77569368 -85030562 + L1PA2 LINE L1 5997 6147 -8 680 289 121 13 chrX 77569379 77569766 -85030164 + L1ME3A LINE L1 3729 4157 -1989 1491 265 163 14 chrX 77569776 77570403 -85029527 - LTR50 LTR ERVL -51 680 6 357 345 36 10 chrX 77570887 77571081 -85028849 + L1ME3A LINE L1 4170 4368 -1778 804 254 122 46 chrX 77571098 77571158 -85028772 + L1ME3A LINE L1 4462 4516 -1630 243 0 0 0 chrX 77571158 77571185 -85028745 + (GA)n Simple_repeat Simple_repeat 2 28 0 804 254 122 46 chrX 77571185 77571410 -85028520 + L1ME3A LINE L1 4516 4722 -1424 1597 173 9 60 chrX 77571410 77571728 -85028202 + AluJo SINE Alu 3 304 -8 804 254 122 46 chrX 77571728 77571981 -85027949 + L1ME3A LINE L1 4722 5042 -1104 702 233 67 0 chrX 77571998 77572148 -85027782 + AluJb SINE Alu 133 292 -20 408 278 56 26 chrX 77572149 77572415 -85027515 + L1ME3A LINE L1 5060 5333 -813 1168 229 61 36 chrX 77572448 77572904 -85027026 + L1ME3A LINE L1 5511 5966 -204 329 305 0 11 chrX 77573190 77573285 -85026645 + MIR SINE MIR 79 172 -90 342 316 58 53 chrX 77573834 77574024 -85025906 - MIR SINE MIR -27 235 45 22 0 0 0 chrX 77574490 77574512 -85025418 + AT_rich Low_complexity Low_complexity 1 22 0 477 312 108 62 chrX 77574904 77575179 -85024751 + L3 LINE CR1 185 446 -1131 2081 153 3 15 chrX 77575179 77575520 -85024410 + MER1B DNA MER1_type 1 337 0 477 312 108 62 chrX 77575520 77575773 -85024157 + L3 LINE CR1 446 737 -840 207 0 0 0 chrX 77575791 77575814 -85024116 + (TG)n Simple_repeat Simple_repeat 2 24 0 422 244 160 27 chrX 77575908 77576170 -85023760 + L1ME4a LINE L1 5743 6039 -82 565 303 53 0 chrX 77576650 77576838 -85023092 - MIR SINE MIR -1 261 64 29 0 0 0 chrX 77578948 77578977 -85020953 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chrX 77583714 77583736 -85016194 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 351 0 0 0 chrX 77583735 77583774 -85016156 + (TG)n Simple_repeat Simple_repeat 2 40 0 185 91 0 30 chrX 77583808 77583841 -85016089 + (CA)n Simple_repeat Simple_repeat 1 32 0 497 140 21 0 chrX 77587007 77587100 -85012830 + GA-rich Low_complexity Low_complexity 2 96 0 201 74 0 0 chrX 77587777 77587804 -85012126 + (GA)n Simple_repeat Simple_repeat 1 27 0 749 189 4 27 chrX 77590922 77591189 -85008741 + CT-rich Low_complexity Low_complexity 1 260 0 34 0 0 0 chrX 77592521 77592555 -85007375 + AT_rich Low_complexity Low_complexity 1 34 0 243 203 0 0 chrX 77592558 77592617 -85007313 + (TG)n Simple_repeat Simple_repeat 2 60 0 252 111 0 0 chrX 77593906 77593951 -85005979 + (TC)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chrX 77595815 77595837 -85004093 + AT_rich Low_complexity Low_complexity 1 22 0 222 105 0 26 chrX 77599744 77599782 -85000148 - L2 LINE L2 -4 3268 3232 786 202 0 9 chrX 77600149 77600357 -84999573 - AluJb SINE Alu -19 293 1 703 157 41 14 chrX 77601531 77601678 -84998252 + L1MD1 LINE L1 6091 6241 -1 278 152 0 0 chrX 77602118 77602164 -84997766 - L2 LINE L2 0 3313 3268 732 294 50 5 chrX 77602206 77602427 -84997503 + MIR SINE MIR 32 262 0 1513 184 59 14 chrX 77602714 77603002 -84996928 - AluSx SINE Alu -11 301 1 1665 149 0 0 chrX 77604383 77604632 -84995298 + AluSx SINE Alu 37 285 -27 604 321 36 8 chrX 77605629 77605881 -84994049 - MIR SINE MIR -2 260 2 378 0 0 0 chrX 77605928 77605970 -84993960 + (TG)n Simple_repeat Simple_repeat 1 42 0 193 242 113 16 chrX 77606337 77606399 -84993531 + L2 LINE L2 3246 3313 0 439 330 98 22 chrX 77606414 77606638 -84993292 - MIR SINE MIR -16 246 6 458 307 73 13 chrX 77606867 77607017 -84992913 + L2 LINE L2 3112 3270 -2 2274 104 0 10 chrX 77607340 77607648 -84992282 + AluSc SINE Alu 1 305 -4 388 260 203 8 chrX 77607736 77607859 -84992071 - L2 LINE L2 -5 3308 3162 201 200 0 0 chrX 77608231 77608271 -84991659 + L2 LINE L2 3261 3300 -13 2108 125 0 6 chrX 77608471 77608782 -84991148 + AluSx SINE Alu 1 309 -3 23 0 0 0 chrX 77609169 77609192 -84990738 + AT_rich Low_complexity Low_complexity 1 23 0 230 323 0 21 chrX 77610909 77611002 -84988928 + L3 LINE CR1 1155 1245 -332 191 200 243 29 chrX 77611380 77611450 -84988480 + MIR3 SINE MIR 82 166 -42 228 284 40 0 chrX 77611873 77611947 -84987983 - MIR SINE MIR -2 260 184 877 269 32 47 chrX 77612357 77612610 -84987320 - MIR SINE MIR -11 251 3 974 230 10 15 chrX 77612796 77613000 -84986930 - MER45C DNA AcHobo 0 953 751 * 1060 242 31 4 chrX 77612993 77613220 -84986710 - MER45C DNA AcHobo -717 236 4 314 284 27 68 chrX 77613267 77613415 -84986515 + MIR SINE MIR 36 177 -85 216 0 0 0 chrX 77613816 77613840 -84986090 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 236 277 15 0 chrX 77613917 77613982 -84985948 + MLT1K LTR MaLR 512 577 -11 977 237 14 14 chrX 77614923 77615142 -84984788 - MER20 DNA MER1_type 0 219 1 377 317 37 12 chrX 77615266 77615411 -84984519 - MIR SINE MIR -57 151 3 831 216 93 29 chrX 77615500 77615704 -84984226 - MER45C DNA AcHobo 0 953 737 423 280 42 56 chrX 77615818 77615961 -84983969 - MER45C DNA AcHobo -423 530 390 1203 229 8 32 chrX 77616019 77616272 -84983658 - MER45C DNA AcHobo -706 247 1 26 0 0 0 chrX 77616324 77616350 -84983580 + AT_rich Low_complexity Low_complexity 1 26 0 291 140 333 11 chrX 77617643 77617736 -84982194 - MIR3 SINE MIR -1 207 85 641 296 48 36 chrX 77618923 77619173 -84980757 + MIR SINE MIR 9 261 -1 221 308 25 67 chrX 77619316 77619436 -84980494 - MIR SINE MIR -63 145 31 22 0 0 0 chrX 77619526 77619548 -84980382 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chrX 77619548 77619575 -84980355 + (T)n Simple_repeat Simple_repeat 1 27 0 499 221 0 39 chrX 77620217 77620321 -84979609 + MIR SINE MIR 3 102 -160 210 105 0 0 chrX 77622024 77622062 -84977868 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 2406 59 0 0 chrX 77622065 77622352 -84977578 - AluY SINE Alu -24 287 1 234 0 0 0 chrX 77622546 77622572 -84977358 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 825 41 0 0 chrX 77622572 77622670 -84977260 - L1PA4 LINE L1 -12 6143 6046 43005 31 22 1 chrX 77623862 77629886 -84970044 + L1HS LINE L1 3 6153 -2 243 371 10 21 chrX 77630262 77630359 -84969571 - MIR SINE MIR -151 111 16 2250 176 4 55 chrX 77630620 77631113 -84968817 - MER45B DNA AcHobo -5 1035 568 320 89 74 22 chrX 77631117 77631252 -84968678 + (TA)n Simple_repeat Simple_repeat 2 143 0 229 190 17 0 chrX 77631255 77631313 -84968617 + L1MCa LINE L1 2006 2064 -4362 * 235 270 0 22 chrX 77631306 77631395 -84968535 - L1MC4 LINE L1 -1339 6703 6617 360 163 35 0 chrX 77631399 77631485 -84968445 + (TA)n Simple_repeat Simple_repeat 1 89 0 323 230 69 0 chrX 77631485 77631572 -84968358 - L1MC4 LINE L1 -1338 6704 6612 532 141 41 0 chrX 77631572 77631693 -84968237 + (TA)n Simple_repeat Simple_repeat 1 126 0 2047 226 40 23 chrX 77631693 77632163 -84967767 - MER45B DNA AcHobo -484 556 79 736 257 0 37 chrX 77632158 77632345 -84967585 - MER45B DNA AcHobo -849 191 12 * 24 0 0 0 chrX 77632731 77632755 -84967175 + AT_rich Low_complexity Low_complexity 1 24 0 1147 210 248 6 chrX 77632814 77632975 -84966955 + MSTD LTR MaLR 1 122 -274 243 0 0 0 chrX 77632975 77633002 -84966928 + (CA)n Simple_repeat Simple_repeat 1 27 0 1147 210 248 6 chrX 77633002 77633154 -84966776 + MSTD LTR MaLR 122 390 -6 2407 215 10 15 chrX 77633203 77633794 -84966136 + L1 LINE L1 4396 4983 -1163 273 189 16 66 chrX 77633811 77633933 -84965997 + (CTATA)n Simple_repeat Simple_repeat 3 118 0 28 71 0 0 chrX 77633934 77633990 -84965940 + AT_rich Low_complexity Low_complexity 1 56 0 4895 161 55 28 chrX 77633999 77634337 -84965593 + L1PA16 LINE L1 4975 5302 -864 2353 97 7 0 chrX 77634337 77634646 -84965284 - AluSp SINE Alu -1 312 2 4895 161 55 28 chrX 77634646 77635448 -84964482 + L1PA16 LINE L1 5302 6157 -9 1385 196 43 84 chrX 77635601 77636005 -84963925 - MLT1A2 LTR MaLR 0 467 1 289 357 184 8 chrX 77636005 77636249 -84963681 - L2 LINE L2 -467 2847 2561 1379 167 35 0 chrX 77637044 77637302 -84962628 + L1PA16 LINE L1 5898 6164 -2 4422 215 52 25 chrX 77637365 77638326 -84961604 - L1MB4 LINE L1 -4 6412 5479 2330 97 3 3 chrX 77638326 77638637 -84961293 - AluY SINE Alu 0 311 1 4422 215 52 25 chrX 77638637 77639004 -84960926 - L1MB4 LINE L1 -937 5479 5124 2148 152 7 26 chrX 77639004 77639425 -84960505 + L1MA4 LINE L1 5888 6300 0 4422 215 52 25 chrX 77639425 77640432 -84959498 - L1MB4 LINE L1 -1292 5124 4015 2536 47 0 0 chrX 77640915 77641215 -84958715 - AluY SINE Alu -11 300 1 1545 260 15 7 chrX 77641796 77642253 -84957677 - L1MB4 LINE L1 -2364 4018 3558 438 20 0 0 chrX 77642393 77642444 -84957486 + (TG)n Simple_repeat Simple_repeat 2 52 0 404 212 147 41 chrX 77642671 77642841 -84957089 - MER113 DNA MER1_type? -29 492 305 192 77 0 0 chrX 77642889 77642915 -84957015 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 282 343 10 0 chrX 77642917 77643019 -84956911 - L2 LINE L2 -1 3312 3210 25281 148 19 13 chrX 77643214 77649130 -84950800 - L1PA8 LINE L1 -1 6486 467 2278 29 0 0 chrX 77649129 77649402 -84950528 - L1PA2 LINE L1 -999 5147 4875 * 7861 16 0 0 chrX 77649402 77650391 -84949539 + L1PA2 LINE L1 5164 6153 -2 207 0 0 0 chrX 77650495 77650518 -84949412 + (A)n Simple_repeat Simple_repeat 1 23 0 2814 181 4 2 chrX 77650518 77650993 -84948937 - L1PA8 LINE L1 -5397 478 3 2834 238 20 32 chrX 77651001 77651538 -84948392 - L1MB4 LINE L1 -2833 3549 3007 2139 204 22 93 chrX 77651538 77652132 -84947798 - MLT2B3 LTR ERVL 0 554 3 2834 238 20 32 chrX 77652132 77653126 -84946804 - L1MB4 LINE L1 -3375 3007 2035 613 309 110 4 chrX 77653379 77653615 -84946315 + MIR SINE MIR 2 262 0 1186 35 0 0 chrX 77653615 77653759 -84946171 + L1PA5 LINE L1 6008 6151 -3 21 0 0 0 chrX 77654255 77654276 -84945654 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chrX 77654715 77654741 -84945189 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chrX 77654858 77654889 -84945041 + AT_rich Low_complexity Low_complexity 1 31 0 3227 122 8 4 chrX 77654889 77655379 -84944551 - L1PA16 LINE L1 -9 6157 5666 713 278 15 0 chrX 77655379 77655581 -84944349 + MIR SINE MIR 56 259 -3 366 322 0 17 chrX 77655601 77655719 -84944211 - MER117 DNA MER1_type -75 122 7 1448 143 19 0 chrX 77655954 77656213 -84943717 + L1MA8 LINE L1 6020 6283 -8 352 221 0 0 chrX 77656232 77656300 -84943630 + L1MEd LINE L1 92 159 -6046 30 0 0 0 chrX 77656331 77656361 -84943569 + AT_rich Low_complexity Low_complexity 1 30 0 462 308 116 32 chrX 77656491 77656741 -84943189 + L1MEd LINE L1 200 470 -5735 2192 125 0 0 chrX 77656752 77657064 -84942866 + AluSx SINE Alu 1 312 0 429 342 71 43 chrX 77657180 77657380 -84942550 + L1MEd LINE L1 538 750 -5455 761 214 44 16 chrX 77657380 77657481 -84942449 + MER5A DNA MER1_type 2 112 -77 180 0 0 0 chrX 77657481 77657501 -84942429 + (CCCTAA)n Simple_repeat Simple_repeat 5 24 0 761 214 44 16 chrX 77657501 77657581 -84942349 + MER5A DNA MER1_type 112 188 -1 429 342 71 43 chrX 77657581 77657661 -84942269 + L1MEd LINE L1 750 826 -5379 387 300 27 39 chrX 77658223 77658480 -84941450 + L1MEd LINE L1 1069 1322 -4883 500 296 130 4 chrX 77658492 77658722 -84941208 + HAL1 LINE L1 1362 1620 -887 469 311 62 26 chrX 77659031 77659372 -84940558 + L1MEd LINE L1 2169 2521 -3875 314 294 64 0 chrX 77659616 77659725 -84940205 + HAL1b LINE L1 1225 1340 -8 202 302 0 48 chrX 77659783 77659846 -84940084 + L2 LINE L2 3199 3258 -14 1523 26 21 0 chrX 77659881 77660071 -84939859 + L1PA4 LINE L1 5960 6153 -2 236 262 33 0 chrX 77660117 77660178 -84939752 + MIR SINE MIR 42 104 -104 1731 178 43 68 chrX 77660481 77660924 -84939006 + MSTB1 LTR MaLR 1 432 0 1407 266 159 49 chrX 77661712 77662446 -84937484 + L2 LINE L2 1206 2020 -1294 1178 211 117 117 chrX 77662451 77663000 -84936930 + MER21B LTR ERV1 185 733 -130 1936 120 7 20 chrX 77663123 77663415 -84936515 - AluSp SINE Alu -25 288 1 745 192 77 108 chrX 77664475 77664772 -84935158 - MLT1C LTR MaLR 0 467 103 15983 203 29 30 chrX 77664786 77668072 -84931858 + L1PA15 LINE L1 1552 4842 -2761 186 43 0 0 chrX 77668072 77668095 -84931835 + (TAA)n Simple_repeat Simple_repeat 2 24 0 15983 203 29 30 chrX 77668095 77669573 -84930357 + L1PA15 LINE L1 4842 6018 -1585 3238 137 96 108 chrX 77669573 77670368 -84929562 - LTR1 LTR ERV1 0 785 1 15983 203 29 30 chrX 77670368 77671948 -84927982 + L1PA15 LINE L1 6018 7599 -4 549 178 0 20 chrX 77671978 77672079 -84927851 - MLT1C LTR MaLR -368 99 1 4211 106 7 0 chrX 77672164 77672770 -84927160 - L1PA13 LINE L1 -4 6159 5550 498 305 98 0 chrX 77672771 77672945 -84926985 - MIR SINE MIR -61 201 11 396 0 0 0 chrX 77674148 77674192 -84925738 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2230 85 0 0 chrX 77674196 77674468 -84925462 - AluSc SINE Alu -37 272 1 360 0 0 0 chrX 77674497 77674537 -84925393 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 271 287 47 21 chrX 77674869 77675009 -84924921 - MIR SINE MIR -73 135 42 4053 122 85 41 chrX 77675259 77676011 -84923919 + LTR1 LTR ERV1 1 785 0 266 179 137 84 chrX 77676375 77676470 -84923460 + MER94 DNA DNA 5 104 -30 180 103 26 77 chrX 77676561 77676600 -84923330 - L3 LINE CR1 -310 1267 1231 1032 227 14 5 chrX 77676641 77676861 -84923069 + MER58A DNA MER1_type 2 223 -1 381 326 133 18 chrX 77676893 77677310 -84922620 + L3 LINE CR1 775 1291 -286 21 0 0 0 chrX 77677908 77677929 -84922001 + AT_rich Low_complexity Low_complexity 1 21 0 1775 160 65 9 chrX 77677998 77678323 -84921607 + MER2 DNA MER2_type 2 344 0 27 0 0 0 chrX 77678731 77678758 -84921172 + AT_rich Low_complexity Low_complexity 1 27 0 181 85 68 17 chrX 77678764 77678823 -84921107 + (TA)n Simple_repeat Simple_repeat 1 62 0 2287 208 61 35 chrX 77678830 77679374 -84920556 - MER74A LTR ERVL 0 558 1 1267 247 67 61 chrX 77679374 77679828 -84920102 - MER90 LTR ERV1 -49 565 109 336 148 0 16 chrX 77680218 77680279 -84919651 + L1MC4 LINE L1 6644 6703 -1339 238 47 47 0 chrX 77680280 77680323 -84919607 + L1MC4 LINE L1 6659 6703 -1339 331 206 48 0 chrX 77680450 77680615 -84919315 + (TA)n Simple_repeat Simple_repeat 1 173 0 316 308 22 0 chrX 77680617 77680708 -84919222 + L1MC4 LINE L1 6613 6705 -1337 * 344 259 24 0 chrX 77680648 77680733 -84919197 - L1MC4 LINE L1 -1337 6705 6619 577 278 37 12 chrX 77680757 77680919 -84919011 - MIR SINE MIR -77 185 20 228 314 50 64 chrX 77681015 77681155 -84918775 - MIR SINE MIR -69 193 56 381 331 73 7 chrX 77681796 77681947 -84917983 + MIR3 SINE MIR 46 206 -2 188 299 224 14 chrX 77682137 77682284 -84917646 + L2 LINE L2 2356 2533 -781 292 241 25 25 chrX 77682454 77682533 -84917397 + MIR SINE MIR 184 262 0 904 221 0 0 chrX 77683048 77683206 -84916724 + FRAM SINE Alu 6 163 -13 1800 182 18 9 chrX 77683655 77683996 -84915934 - MER2 DNA MER2_type 0 344 1 247 282 73 27 chrX 77684013 77684123 -84915807 + L3 LINE CR1 1414 1528 -49 26 50 0 0 chrX 77685494 77685534 -84914396 + AT_rich Low_complexity Low_complexity 1 40 0 285 236 142 55 chrX 77685643 77685770 -84914160 + MIR3 SINE MIR 20 157 -51 305 347 14 14 chrX 77685890 77686037 -84913893 - MER5A DNA MER1_type -3 186 40 23 0 0 0 chrX 77687277 77687300 -84912630 + AT_rich Low_complexity Low_complexity 1 23 0 949 161 89 6 chrX 77687593 77687773 -84912157 + MER2 DNA MER2_type 12 206 -139 2055 112 42 0 chrX 77687807 77688094 -84911836 - AluSx SINE Alu -13 299 1 4288 147 17 1 chrX 77688153 77688856 -84911074 + L1PA16 LINE L1 5453 6166 0 189 74 0 0 chrX 77688873 77688900 -84911030 + (CA)n Simple_repeat Simple_repeat 2 28 0 328 228 152 0 chrX 77689040 77689132 -84910798 - L1ME LINE L1 -460 5661 5556 3620 230 32 11 chrX 77689344 77690425 -84909505 - L1MB5 LINE L1 0 6174 5063 6019 113 3 25 chrX 77690425 77691940 -84907990 - L1PA11 LINE L1 0 6174 4668 2289 90 0 13 chrX 77691940 77692240 -84907690 - AluY SINE Alu -15 296 1 6019 113 3 25 chrX 77692240 77692338 -84907592 - L1PA11 LINE L1 -1506 4668 4569 3620 230 32 11 chrX 77692338 77692564 -84907366 - L1MB5 LINE L1 -1111 5063 4843 1802 241 21 0 chrX 77692563 77693040 -84906890 + L1 LINE L1 4891 5377 -769 * 1190 170 69 45 chrX 77693065 77693194 -84906736 + L1MA4 LINE L1 5999 6123 -177 1979 147 3 7 chrX 77693194 77693501 -84906429 - AluSx SINE Alu -6 306 1 1190 170 69 45 chrX 77693501 77693660 -84906270 + L1MA4 LINE L1 6123 6294 -6 1307 245 66 17 chrX 77693676 77694203 -84905727 + L1M3 LINE L1 2315 2867 -3279 5359 156 13 7 chrX 77694223 77695172 -84904758 - L1PA15 LINE L1 -5 6160 5209 2073 149 115 9 chrX 77695206 77695668 -84904262 + L1MA5A LINE L1 5783 6293 -4 1235 204 11 11 chrX 77695731 77696000 -84903930 + L1M3 LINE L1 5353 5621 -550 1757 23 0 4 chrX 77696028 77696256 -84903674 - L1PA3 LINE L1 -308 5847 5626 407 207 69 112 chrX 77696222 77696526 -84903404 + L1M4 LINE L1 3650 3940 -2206 * 3113 279 50 18 chrX 77696608 77697976 -84901954 + L1M4 LINE L1 3928 5339 -807 9107 171 9 8 chrX 77697988 77700873 -84899057 - L1MA3 LINE L1 0 6305 3418 7488 34 1 0 chrX 77700872 77701773 -84898157 - L1PA4 LINE L1 0 6155 5254 * 2484 189 8 2 chrX 77701795 77702265 -84897665 - L1P LINE L1 -2215 3931 3459 223 333 142 25 chrX 77702265 77702469 -84897461 + MIR SINE MIR 22 249 -13 582 256 24 43 chrX 77702785 77702949 -84896981 + MIR SINE MIR 8 168 -94 242 240 0 0 chrX 77702950 77703000 -84896930 - MER63 DNA MER1_type -6 1055 1006 9264 163 11 30 chrX 77703000 77704438 -84895492 - L1MA1 LINE L1 0 6302 4837 6991 60 2 2 chrX 77704438 77705812 -84894118 - L1PA6 LINE L1 -4 6801 5422 9264 163 11 30 chrX 77705812 77707370 -84892560 - L1MA1 LINE L1 -1465 4837 3369 * 12858 217 38 32 chrX 77707361 77709107 -84890823 - L1PA6 LINE L1 -1531 5266 3533 1456 100 14 0 chrX 77709107 77709317 -84890613 - L1PA6 LINE L1 -3 6151 5939 12858 217 38 32 chrX 77709317 77711144 -84888786 - L1PA6 LINE L1 -3264 3533 1636 5706 23 0 0 chrX 77711144 77711797 -84888133 - L1PA3 LINE L1 -3 6152 5500 12858 217 38 32 chrX 77711797 77713444 -84886486 - L1PA6 LINE L1 -5161 1636 1 873 242 79 0 chrX 77713452 77713507 -84886423 + AluJo SINE Alu 66 115 -197 264 59 0 0 chrX 77713507 77713541 -84886389 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 873 242 79 0 chrX 77713541 77713712 -84886218 + AluJo SINE Alu 115 310 -2 470 152 11 0 chrX 77713713 77713805 -84886125 + GA-rich Low_complexity Low_complexity 2 94 0 910 273 22 4 chrX 77714413 77714644 -84885286 + MIR SINE MIR 1 235 -27 216 339 62 0 chrX 77714656 77714721 -84885209 + MER91C DNA MER1_type 40 108 -32 4048 178 8 12 chrX 77715040 77716223 -84883707 - L1P4 LINE L1 -464 5701 4519 6329 114 37 25 chrX 77716223 77717218 -84882712 - LTR13 LTR ERVK 0 1007 1 4048 178 8 12 chrX 77717218 77717319 -84882611 - L1P4 LINE L1 -1646 4519 4419 322 125 0 0 chrX 77717311 77717359 -84882571 - L1 LINE L1 -2025 4121 4074 * 268 306 139 19 chrX 77717374 77717482 -84882448 + MIR SINE MIR 132 252 -10 200 188 0 0 chrX 77718062 77718094 -84881836 + (CA)n Simple_repeat Simple_repeat 2 33 0 293 73 0 0 chrX 77718356 77718397 -84881533 - MADE1 DNA Mariner 0 80 40 229 261 169 0 chrX 77718405 77718470 -84881460 - MIR SINE MIR -28 234 159 305 196 0 0 chrX 77718470 77718521 -84881409 - MADE1 DNA Mariner -29 51 1 6773 139 31 24 chrX 77719017 77720238 -84879692 - Tigger3b DNA MER2_type -1 1230 1 595 192 0 56 chrX 77720261 77720386 -84879544 - MLT1C LTR MaLR 0 467 350 2567 40 0 0 chrX 77721882 77722179 -84877751 - AluY SINE Alu -14 297 1 7685 232 52 9 chrX 77722257 77724086 -84875844 - L1MB7 LINE L1 -19 6165 4140 197 33 33 0 chrX 77724086 77724116 -84875814 + (TG)n Simple_repeat Simple_repeat 2 32 0 7685 232 52 9 chrX 77724116 77725541 -84874389 - L1MB7 LINE L1 -2044 4140 2778 4292 154 67 33 chrX 77725537 77725659 -84874271 - L1PA16 LINE L1 0 6166 6050 * 4720 129 14 40 chrX 77725659 77725886 -84874044 + LTR25 LTR ERV1 1 233 -561 2390 68 0 0 chrX 77725886 77726178 -84873752 + AluY SINE Alu 1 292 -19 4720 129 14 40 chrX 77726178 77726766 -84873164 + LTR25 LTR ERV1 233 794 0 4292 154 67 33 chrX 77726766 77727654 -84872276 - L1PA16 LINE L1 -116 6050 5128 846 190 0 6 chrX 77727652 77727810 -84872120 - L1 LINE L1 -1280 4866 4710 * 6743 231 24 14 chrX 77727823 77728970 -84870960 - L1 LINE L1 -977 5484 4311 2148 164 58 27 chrX 77728970 77729384 -84870546 - MSTA LTR MaLR -1 427 1 6743 231 24 14 chrX 77729384 77730097 -84869833 - L1 LINE L1 -2150 4311 3606 30 45 0 0 chrX 77730125 77730169 -84869761 + AT_rich Low_complexity Low_complexity 1 44 0 6399 51 2 1 chrX 77730170 77730970 -84868960 - L1PA5 LINE L1 -2 6152 5352 31 26 0 0 chrX 77730970 77731008 -84868922 + AT_rich Low_complexity Low_complexity 1 38 0 41721 58 1 7 chrX 77731008 77737194 -84862736 - L1PA3 LINE L1 0 6155 11 265 203 54 0 chrX 77737209 77737283 -84862647 - L1 LINE L1 -2845 3616 3539 1793 248 9 38 chrX 77737290 77737587 -84862343 - L1P3 LINE L1 -3514 2947 2669 6568 70 25 3 chrX 77737587 77738695 -84861235 - L1PA7 LINE L1 -4 6150 5029 1793 248 9 38 chrX 77738695 77738980 -84860950 - L1P3 LINE L1 -3792 2669 2377 4204 219 23 63 chrX 77838989 77840979 -84758951 - L1P3 LINE L1 -4485 1976 2 248 336 37 37 chrX 77842830 77843047 -84756883 + LTR16C LTR ERVL 252 468 -23 315 312 64 7 chrX 77844943 77845084 -84754846 + MIR SINE MIR 3 151 -111 1254 300 13 0 chrX 77846693 77847066 -84752864 + HERV16 LTR ERVL 1016 1393 -3603 212 149 21 0 chrX 77847163 77847210 -84752720 + (TA)n Simple_repeat Simple_repeat 1 48 0 1608 166 22 7 chrX 77847443 77847721 -84752209 - AluJb SINE Alu -30 282 1 4730 146 22 5 chrX 77849831 77850697 -84749233 - L1MA2 LINE L1 -19 6285 5405 19901 33 1 2 chrX 77850800 77853765 -84746165 - L1P2 LINE L1 -358 7235 4274 7041 114 23 20 chrX 77853760 77854983 -84744947 - L1P2 LINE L1 -4378 3206 1150 * 250 183 28 0 chrX 77855591 77855662 -84744268 + (TG)n Simple_repeat Simple_repeat 2 74 0 4555 56 12 2 chrX 77855978 77856563 -84743367 + LTR10C LTR ERV1 1 591 0 519 209 0 7 chrX 77857294 77857433 -84742497 - L1MA2 LINE L1 -907 5239 5102 1049 198 141 113 chrX 77857435 77857545 -84742385 + MSTA LTR MaLR 1 106 -322 248 53 26 0 chrX 77857545 77857583 -84742347 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1049 198 141 113 chrX 77857583 77857835 -84742095 + MSTA LTR MaLR 106 426 -2 378 222 0 0 chrX 77857837 77857918 -84742012 + MSTA-int LTR MaLR 1 81 -1570 2284 105 0 3 chrX 77857919 77858224 -84741706 + AluY SINE Alu 2 305 -6 1662 220 5 96 chrX 77858227 77858680 -84741250 + L1 LINE L1 4488 4864 -1282 2053 135 0 0 chrX 77858680 77858962 -84740968 + AluSx SINE Alu 3 284 -28 1662 220 5 96 chrX 77858962 77859168 -84740762 + L1 LINE L1 4864 5087 -1059 985 167 92 8 chrX 77859185 77859425 -84740505 - MSTA LTR MaLR 0 428 169 3098 51 2 20 chrX 77859584 77860033 -84739897 - LTR7 LTR ERV1 -9 441 1 1004 329 7 5 chrX 77860085 77860504 -84739426 - L1PA12 LINE L1 -4983 2598 2179 2438 48 0 7 chrX 77860793 77861086 -84738844 - AluY SINE Alu -20 291 1 467 287 86 11 chrX 77861276 77861450 -84738480 + L2 LINE L2 3094 3280 -33 405 275 11 0 chrX 77861741 77861832 -84738098 - MER5B DNA MER1_type -12 166 75 5520 182 49 15 chrX 77861949 77864254 -84735676 - L1 LINE L1 -2702 4863 2479 7027 135 25 16 chrX 77864354 77865597 -84734333 + MER57A-int LTR ERV1 5677 6930 -607 372 99 42 148 chrX 77865889 77866031 -84733899 + LTR54B LTR ERV1 5 131 -367 1102 118 209 5 chrX 77866031 77866242 -84733688 + MER57A-int LTR ERV1 7279 7532 -5 2053 195 8 0 chrX 77866246 77866646 -84733284 + MER57A LTR ERV1 1 403 0 25 0 0 0 chrX 77866812 77866837 -84733093 + AT_rich Low_complexity Low_complexity 1 25 0 2117 143 19 35 chrX 77867129 77867499 -84732431 + THE1B LTR MaLR 1 364 0 450 293 7 0 chrX 77867699 77867846 -84732084 + L1M2b LINE L1 496 643 -6566 570 402 9 31 chrX 77868527 77868985 -84730945 + L1M2b LINE L1 1160 1607 -5602 2224 255 33 18 chrX 77868987 77869866 -84730064 + L1M2b LINE L1 1812 2703 -4506 2450 162 19 14 chrX 77869866 77870292 -84729638 - MSTA LTR MaLR 0 428 1 5423 185 18 32 chrX 77870292 77871463 -84728467 - MSTA-int LTR MaLR 0 1580 427 1152 188 35 0 chrX 77871507 77871736 -84728194 - MSTA LTR MaLR 0 428 192 450 250 0 0 chrX 77871750 77871878 -84728052 + L1M2b LINE L1 3488 3615 -3593 879 161 12 6 chrX 77871907 77872069 -84727861 - MSTA LTR MaLR -265 163 1 2164 256 24 25 chrX 77872071 77873177 -84726753 + L1M2 LINE L1 2341 3451 -3397 2339 91 3 0 chrX 77873177 77873474 -84726456 - AluSp SINE Alu -15 298 1 2164 256 24 25 chrX 77873474 77873539 -84726391 + L1M2 LINE L1 3451 3515 -3333 6532 41 34 0 chrX 77873544 77874372 -84725558 - MER11D LTR ERVK 0 897 42 27 29 0 0 chrX 77874657 77874691 -84725239 + AT_rich Low_complexity Low_complexity 1 34 0 1579 126 5 79 chrX 77875001 77875374 -84724556 - MER4A LTR ERV1 0 664 261 505 144 21 10 chrX 77875374 77875471 -84724459 - MER4A LTR ERV1 -566 98 1 217 263 63 63 chrX 77876856 77876951 -84722979 + MIR SINE MIR 51 145 -63 243 367 0 13 chrX 77877119 77877277 -84722653 + MER117 DNA MER1_type 11 166 -31 712 110 62 48 chrX 77877585 77877731 -84722199 + MER34 LTR ERV1 59 206 -336 426 156 211 39 chrX 77877733 77877861 -84722069 - MER66A-int LTR ERV1 -1969 4707 4558 389 244 23 0 chrX 77877862 77877948 -84721982 - MER4D LTR ERV1 -712 160 73 1078 162 0 101 chrX 77877951 77878229 -84721701 - MER66A-int LTR ERV1 -2246 4430 4181 362 227 0 10 chrX 77878250 77878347 -84721583 - MER66A-int LTR ERV1 -5452 1224 1129 1827 230 99 87 chrX 77878479 77879343 -84720587 - MER66A-int LTR ERV1 -5799 877 3 1189 213 96 45 chrX 77879346 77879699 -84720231 - MER66A LTR ERV1 0 478 108 4494 263 35 39 chrX 77879810 77881704 -84718226 - L1PA12 LINE L1 -4753 2828 528 2941 172 8 2 chrX 77881707 77882206 -84717724 - L1PA12 LINE L1 -7077 504 3 319 208 39 0 chrX 77882468 77882545 -84717385 - LTR43 LTR ERV1 -336 266 187 5635 233 31 29 chrX 77883075 77884933 -84714997 + L1 LINE L1 2622 4483 -1663 1051 285 40 87 chrX 77885041 77885596 -84714334 - L2 LINE L2 -605 2709 2181 1481 312 160 18 chrX 77885783 77886673 -84713257 - L2 LINE L2 -1076 2238 1223 2372 86 7 0 chrX 77886979 77887280 -84712650 + AluSc SINE Alu 1 303 -6 228 284 12 25 chrX 77887905 77887986 -84711944 - MIR SINE MIR -71 191 112 387 318 53 11 chrX 77888659 77888848 -84711082 + L1ME4a LINE L1 5631 5827 -294 3752 235 17 29 chrX 77888934 77889866 -84710064 + L1M1 LINE L1 15 935 -6630 4353 118 4 4 chrX 78089869 78090939 -84508991 - L1PA11 LINE L1 -329 5845 4777 1875 77 0 0 chrX 78091047 78091295 -84508635 - L1PA12 LINE L1 -337 5831 5584 1956 174 14 25 chrX 78091601 78091968 -84507962 - THE1B LTR MaLR 0 364 2 259 239 248 9 chrX 78093304 78093413 -84506517 - L2 LINE L2 -12 3301 3167 781 226 14 14 chrX 78094313 78094521 -84505409 + L1MB1 LINE L1 5961 6168 0 6644 73 6 0 chrX 78094852 78096168 -84503762 + L1PA7 LINE L1 4827 6147 -7 7158 226 39 13 chrX 78096173 78097998 -84501932 + L1 LINE L1 2378 4256 -1890 2052 107 7 0 chrX 78097998 78098270 -84501660 + AluSc SINE Alu 1 274 -35 7158 226 39 13 chrX 78098270 78098388 -84501542 + L1 LINE L1 4256 4370 -1776 1397 188 53 16 chrX 78098497 78098816 -84501114 + L1MC/D LINE L1 5418 5748 -585 4995 229 42 23 chrX 78098824 78101011 -84498919 + L1MA4 LINE L1 77 2305 -4023 271 82 180 49 chrX 78101025 78101086 -84498844 + L1P3 LINE L1 511 579 -5882 * 4471 111 7 4 chrX 78101053 78101728 -84498202 + L1P LINE L1 4363 5039 -1422 3827 191 61 8 chrX 78101838 78103057 -84496873 + L1MA4 LINE L1 4693 5976 -506 186 43 0 0 chrX 78103057 78103080 -84496850 + (TA)n Simple_repeat Simple_repeat 1 23 0 3827 191 61 8 chrX 78103080 78103155 -84496775 + L1MA4 LINE L1 5976 6046 -436 * 9035 230 28 44 chrX 78103128 78105196 -84494734 + L1M2c LINE L1 9 2108 -4680 2028 122 44 0 chrX 78105196 78105490 -84494440 + AluSx SINE Alu 3 309 -3 9035 230 28 44 chrX 78105490 78106269 -84493661 + L1M2c LINE L1 2108 2785 -4003 2280 100 0 0 chrX 78106269 78106559 -84493371 + AluSq SINE Alu 1 290 -23 9035 230 28 44 chrX 78106559 78107124 -84492806 + L1M2c LINE L1 2785 3357 -3431 10070 166 39 5 chrX 78107224 78108120 -84491810 - L1PBb LINE L1 -1523 4680 3816 252 0 0 0 chrX 78108120 78108148 -84491782 + (TTG)n Simple_repeat Simple_repeat 3 30 0 10070 166 39 5 chrX 78108148 78109173 -84490757 - L1PBb LINE L1 -2387 3816 2694 3532 257 40 35 chrX 78109170 78109295 -84490635 - L1PA12 LINE L1 -6506 1075 952 * 2344 70 3 3 chrX 78109295 78109595 -84490335 + AluY SINE Alu 1 300 -11 3532 257 40 35 chrX 78109595 78110529 -84489401 - L1PA12 LINE L1 -6629 952 11 4934 145 50 21 chrX 78110539 78111863 -84488067 - L1PBb LINE L1 -4225 1979 625 12771 197 17 48 chrX 78111882 78112952 -84486978 + L1PA13 LINE L1 2086 3187 -2976 387 41 0 0 chrX 78112952 78113001 -84486929 + (CA)n Simple_repeat Simple_repeat 2 50 0 12771 197 17 48 chrX 78113001 78116145 -84483785 + L1PA13 LINE L1 3187 6161 -2 6834 206 27 8 chrX 78116133 78117812 -84482118 + L1M2c LINE L1 3535 5244 -1544 * 20690 30 0 0 chrX 78117912 78121196 -84478734 + L1PA2 LINE L1 2902 6185 0 1325 254 25 3 chrX 78121196 78121562 -84478368 - MSTB-int LTR MaLR -1277 374 1 1720 238 47 7 chrX 78121562 78121970 -84477960 - MSTB LTR MaLR 0 426 3 2331 214 75 10 chrX 78122509 78123019 -84476911 + L1PA15-16 LINE L1 1300 1842 -5007 8952 263 22 31 chrX 78123071 78124309 -84475621 + L1PA15-16 LINE L1 2409 3657 -3192 1923 159 0 0 chrX 78124309 78124592 -84475338 + AluSx SINE Alu 1 283 -29 313 122 0 0 chrX 78124592 78124638 -84475292 + AluYb8 SINE Alu 1 329 0 8952 263 22 31 chrX 78124638 78127014 -84472916 + L1PA15-16 LINE L1 3657 5985 -864 1844 230 61 34 chrX 78127174 78127662 -84472268 + L1PA12 LINE L1 10 513 -7068 5610 132 12 14 chrX 78127662 78128892 -84471038 + L1PA11 LINE L1 4942 6171 -3 4219 233 40 23 chrX 78128896 78130137 -84469793 + L1MA1 LINE L1 3138 4400 -1746 736 302 41 54 chrX 78130139 78130454 -84469476 + L1M3b LINE L1 2 312 -5969 6349 154 25 26 chrX 78130554 78132224 -84467706 + L1MA1 LINE L1 4628 6302 0 1041 205 0 10 chrX 78132284 78132489 -84467441 + MLT1B LTR MaLR 188 390 0 792 349 58 52 chrX 78133128 78133295 -84466635 - L2 LINE L2 -341 2973 2809 1457 168 49 80 chrX 78133295 78133682 -84466248 - THE1C LTR MaLR 0 375 1 792 349 58 52 chrX 78133682 78134303 -84465627 - L2 LINE L2 -505 2809 2180 29 70 0 0 chrX 78134745 78134802 -84465128 + AT_rich Low_complexity Low_complexity 1 57 0 553 344 28 12 chrX 78135789 78136036 -84463894 - MLT1L LTR MaLR 0 615 365 1961 199 32 19 chrX 78136283 78136694 -84463236 + MSTB LTR MaLR 1 416 -10 1027 148 11 0 chrX 78136736 78136912 -84463018 + MSTB-int LTR MaLR 1 178 -1473 5363 188 142 22 chrX 78136924 78137092 -84462838 + MSTB-int LTR MaLR 321 467 -1184 2211 119 3 0 chrX 78137092 78137394 -84462536 - AluSp SINE Alu -8 305 3 5363 188 142 22 chrX 78137394 78138413 -84461517 + MSTB-int LTR MaLR 467 1651 0 2007 202 29 17 chrX 78138413 78138634 -84461296 + MSTB LTR MaLR 1 231 -195 180 0 0 0 chrX 78138634 78138654 -84461276 + (CA)n Simple_repeat Simple_repeat 1 20 0 2007 202 29 17 chrX 78138654 78138853 -84461077 + MSTB LTR MaLR 231 426 0 291 308 0 0 chrX 78138964 78139042 -84460888 + L2 LINE L2 3234 3311 -2 352 310 194 8 chrX 78139260 78139502 -84460428 - MLT1L LTR MaLR -33 582 296 1544 214 70 37 chrX 78139726 78139963 -84459967 - MSTB1 LTR MaLR -4 428 173 2266 71 0 10 chrX 78139963 78140260 -84459670 + AluY SINE Alu 13 306 -5 1544 214 70 37 chrX 78140260 78140396 -84459534 - MSTB1 LTR MaLR -259 173 43 4465 241 13 6 chrX 78140397 78141372 -84458558 - MSTB1-int LTR MaLR -312 1339 358 * 13679 51 71 4 chrX 78141370 78143181 -84456749 - L1P LINE L1 -4211 1935 3 5522 31 0 0 chrX 78143181 78143853 -84456077 + L1P LINE L1 1934 2605 -3541 205 320 21 10 chrX 78144726 78144823 -84455107 - MIR3 SINE MIR -30 178 81 298 211 0 7 chrX 78145533 78145620 -84454310 - L1MA8 LINE L1 -2 6289 6206 482 217 31 23 chrX 78145716 78145845 -84454085 + L1PA16 LINE L1 2787 2916 -3933 * 9856 225 24 18 chrX 78145844 78149383 -84450547 + L1PA16 LINE L1 3275 6868 -1 3169 183 15 51 chrX 78149385 78150128 -84449802 - L1MA8 LINE L1 -65 6226 5511 2150 229 33 26 chrX 78150173 78150719 -84449211 - MER74A LTR ERVL -1 557 8 847 256 191 45 chrX 78150719 78151137 -84448793 + L2 LINE L2 2388 2866 -448 330 285 146 14 chrX 78151137 78151281 -84448649 + L2 LINE L2 3143 3305 -8 1677 250 141 9 chrX 78151661 78152551 -84447379 + L1M1 LINE L1 3308 4328 -3237 616 185 0 25 chrX 78152551 78152670 -84447260 - MSTD LTR MaLR -280 116 1 5157 166 46 20 chrX 78152670 78153718 -84446212 + L1MA9 LINE L1 5235 6311 -1 32 0 0 0 chrX 78154211 78154243 -84445687 + AT_rich Low_complexity Low_complexity 1 32 0 431 207 69 28 chrX 78154256 78154401 -84445529 - L1MA3 LINE L1 -123 6182 6032 2224 187 19 8 chrX 78155044 78155520 -84444410 - L1MA4 LINE L1 -6 6294 5814 2705 147 20 2 chrX 78155522 78156012 -84443918 - L1MA5A LINE L1 -1 6296 5798 2110 69 0 0 chrX 78156012 78156287 -84443643 - L1PA4 LINE L1 -6 6149 5873 1959 214 53 14 chrX 78156287 78156848 -84443082 - L1 LINE L1 -2621 3525 2943 15723 175 23 22 chrX 78356848 78363093 -84236837 - L1M1 LINE L1 -681 7042 791 296 222 83 0 chrX 78363115 78363187 -84236743 - L1M1 LINE L1 -7472 93 16 14625 31 9 0 chrX 78363270 78365799 -84234131 - L1PA3 LINE L1 -3 6152 3606 527 230 80 22 chrX 78367845 78368012 -84231918 - MIR SINE MIR -56 206 34 1669 228 57 43 chrX 78368743 78369256 -84230674 - MLT2B1 LTR ERVL 0 520 1 4241 179 34 39 chrX 78369327 78370113 -84229817 + L1MB2 LINE L1 5254 6036 -135 1761 142 67 45 chrX 78370113 78370443 -84229487 + MER1B DNA MER1_type 1 337 0 4241 179 34 39 chrX 78370443 78370552 -84229378 + L1MB2 LINE L1 6036 6144 -27 303 280 155 77 chrX 78371023 78371175 -84228755 + L1ME4a LINE L1 5425 5564 -557 10203 83 1 12 chrX 78371175 78373372 -84226558 - L1PA7 LINE L1 -13 6141 3959 303 280 155 77 chrX 78373372 78373410 -84226520 + L1ME4a LINE L1 5564 5598 -523 2108 228 66 2 chrX 78373410 78373898 -84226032 + LTR53 LTR ERVL 1 519 0 303 280 155 77 chrX 78373898 78373913 -84226017 + L1ME4a LINE L1 5598 5647 -474 256 314 44 22 chrX 78373925 78373995 -84225935 + L1ME4a LINE L1 5742 5809 -1999 3020 162 24 14 chrX 78373995 78374466 -84225464 + L1MB1 LINE L1 5572 6052 -116 1591 88 5 5 chrX 78374466 78374683 -84225247 + AluY SINE Alu 93 309 -2 3020 162 24 14 chrX 78374683 78374802 -84225128 + L1MB1 LINE L1 6052 6168 0 256 314 44 22 chrX 78374802 78374868 -84225062 + L1ME4a LINE L1 5809 5881 -1927 194 125 0 25 chrX 78376575 78376615 -84223315 + (TC)n Simple_repeat Simple_repeat 2 40 0 215 253 39 110 chrX 78376764 78376918 -84223012 + MIR SINE MIR 64 206 -56 299 222 188 35 chrX 78377160 78377304 -84222626 + L1ME4a LINE L1 5939 6104 -17 3738 214 33 12 chrX 78377784 78378778 -84221152 + L1MB7 LINE L1 5167 6184 0 2358 101 8 1 chrX 78378834 78379389 -84220541 - L1PA10 LINE L1 -615 5553 4996 * 4262 93 12 5 chrX 78379381 78379997 -84219933 + L1PA10 LINE L1 5554 6173 0 733 259 71 10 chrX 78380065 78380262 -84219668 + MER63A DNA MER1_type 2 210 0 610 233 0 0 chrX 78380314 78380430 -84219500 + FLAM_A SINE Alu 1 116 -17 187 383 96 17 chrX 78380572 78380687 -84219243 - L2 LINE L2 -8 3264 3141 399 260 47 53 chrX 78380803 78380972 -84218958 - HAL1 LINE L1 0 2507 2340 1182 283 72 31 chrX 78380987 78381472 -84218458 - MLT1J LTR MaLR 0 511 7 939 247 62 90 chrX 78381475 78381973 -84217957 - HAL1 LINE L1 -179 2328 1845 346 261 11 22 chrX 78381984 78382076 -84217854 - HAL1 LINE L1 -1329 1178 1088 2645 33 3 0 chrX 78382254 78382560 -84217370 + AluY SINE Alu 1 307 -4 2692 51 0 0 chrX 78383311 78383647 -84216283 - L1PA5 LINE L1 -8 6146 5811 21 36 0 0 chrX 78384003 78384031 -84215899 + AT_rich Low_complexity Low_complexity 1 28 0 504 117 0 0 chrX 78384191 78384268 -84215662 + (TA)n Simple_repeat Simple_repeat 2 78 0 287 297 101 43 chrX 78384335 78384473 -84215457 + MER5A DNA MER1_type 43 188 -1 397 242 116 58 chrX 78384557 78384747 -84215183 + L2 LINE L2 3113 3313 0 262 282 16 13 chrX 78385018 78385104 -84214826 - MIR SINE MIR -32 176 82 1019 193 11 0 chrX 78385387 78385574 -84214356 - MLT2B1 LTR ERVL -331 189 1 * 1503 222 41 18 chrX 78385574 78385915 -84214015 - MLT1A1 LTR MaLR -16 349 1 1367 102 15 0 chrX 78386481 78386687 -84213243 + L1MA2 LINE L1 6096 6304 0 2546 219 75 60 chrX 78387283 78387785 -84212145 + L1MDa LINE L1 6 506 -6034 206 54 0 54 chrX 78387785 78387822 -84212108 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2546 219 75 60 chrX 78387822 78388093 -84211837 + L1MDa LINE L1 506 771 -5769 473 0 18 0 chrX 78388107 78388164 -84211766 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 2177 258 35 9 chrX 78388164 78389098 -84210832 + L1MDa LINE L1 2340 3301 -3239 2152 147 8 5 chrX 78389098 78389465 -84210465 - L1PB4 LINE L1 0 6156 5789 216 0 0 0 chrX 78389470 78389494 -84210436 + (CA)n Simple_repeat Simple_repeat 1 24 0 211 87 65 43 chrX 78389494 78389540 -84210390 + (TTAGGG)n Simple_repeat Simple_repeat 5 51 0 253 237 0 43 chrX 78389556 78389649 -84210281 - L1MC4 LINE L1 -1339 6703 6615 * 284 264 23 0 chrX 78389568 78389655 -84210275 + L1MC4 LINE L1 6614 6702 -1340 429 20 0 0 chrX 78389721 78389771 -84210159 + (CA)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chrX 78389771 78389795 -84210135 + AT_rich Low_complexity Low_complexity 1 24 0 9076 163 63 32 chrX 78389799 78391660 -84208270 + L1MC4a LINE L1 117 2036 -4504 525 180 55 0 chrX 78391683 78391811 -84208119 + L1MC4a LINE L1 3347 3481 -3059 790 191 86 25 chrX 78391811 78391973 -84207957 + FRAM SINE Alu 1 171 -5 323 155 41 0 chrX 78391974 78392071 -84207859 + L1MC4a LINE L1 3468 3568 -2972 * 865 230 36 0 chrX 78392050 78392302 -84207628 + L1MC4a LINE L1 4754 5014 -1526 * 1868 248 14 22 chrX 78392298 78392850 -84207080 - L1M4 LINE L1 -1017 5129 4582 575 155 0 39 chrX 78392861 78392964 -84206966 - FRAM SINE Alu -68 108 10 25 0 0 0 chrX 78393031 78393056 -84206874 + AT_rich Low_complexity Low_complexity 1 25 0 3027 210 113 26 chrX 78393078 78394040 -84205890 + L1MC4a LINE L1 5559 8193 -9 608 147 0 62 chrX 78394401 78394530 -84205400 + L1MA6 LINE L1 6180 6300 0 21 57 0 0 chrX 78394534 78394569 -84205361 + AT_rich Low_complexity Low_complexity 1 35 0 327 327 81 37 chrX 78395251 78395425 -84204505 + MIR3 SINE MIR 3 185 -23 25 0 0 0 chrX 78395429 78395454 -84204476 + AT_rich Low_complexity Low_complexity 1 25 0 979 199 26 82 chrX 78395535 78395587 -84204343 - L1MB7 LINE L1 -9 6175 6122 1279 214 42 35 chrX 78395587 78395730 -84204200 + AluJo SINE Alu 1 142 -170 217 26 26 51 chrX 78395730 78395769 -84204161 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1279 214 42 35 chrX 78395769 78395914 -84204016 + AluJo SINE Alu 142 291 -21 979 199 26 82 chrX 78395914 78396167 -84203763 - L1MB7 LINE L1 -62 6122 5887 354 331 34 14 chrX 78396239 78396589 -84203341 - L1M4 LINE L1 -913 5233 4877 315 177 0 0 chrX 78396635 78396697 -84203233 + (CA)n Simple_repeat Simple_repeat 1 62 0 604 327 86 50 chrX 78396935 78397281 -84202649 - L2 LINE L2 -944 2370 1997 868 197 17 34 chrX 78397281 78397459 -84202471 + FAM SINE Alu 1 175 0 604 327 86 50 chrX 78397459 78397650 -84202280 - L2 LINE L2 -1317 1997 1814 189 0 0 0 chrX 78399135 78399156 -84200774 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 562 106 11 32 chrX 78399982 78400076 -84199854 - L1MA9 LINE L1 -366 5946 5855 2244 137 101 5 chrX 78400081 78400468 -84199462 - MSTA LTR MaLR -4 424 1 703 294 40 18 chrX 78400503 78400829 -84199101 + L1MA9 LINE L1 5936 6268 -44 24 0 0 0 chrX 78400835 78400859 -84199071 + AT_rich Low_complexity Low_complexity 1 24 0 243 176 0 44 chrX 78401405 78401473 -84198457 - L1ME4a LINE L1 -6 6115 6051 689 248 59 86 chrX 78401653 78402162 -84197768 - L1ME4a LINE L1 -2 6119 5625 191 149 0 43 chrX 78404202 78404249 -84195681 + (TATG)n Simple_repeat Simple_repeat 4 48 0 204 40 0 0 chrX 78404253 78404278 -84195652 + (CA)n Simple_repeat Simple_repeat 2 26 0 180 77 0 0 chrX 78404487 78404513 -84195417 + (T)n Simple_repeat Simple_repeat 1 26 0 221 171 24 0 chrX 78404700 78404741 -84195189 + CT-rich Low_complexity Low_complexity 1 42 0 332 319 54 60 chrX 78404927 78405112 -84194818 + L3 LINE CR1 1335 1518 -59 1657 110 34 137 chrX 78407196 78407577 -84192353 - MER7A DNA MER2_type -3 343 4 834 175 35 15 chrX 78408983 78409183 -84190747 - L1MA7 LINE L1 -10 6281 6078 1019 206 39 19 chrX 78409185 78409442 -84190488 + L1MA7 LINE L1 5799 6060 -231 512 208 10 0 chrX 78409467 78409580 -84190350 - L1ME1 LINE L1 -2 6332 6060 * 1148 223 23 19 chrX 78409559 78409824 -84190106 - L1ME1 LINE L1 -370 5794 5529 3134 139 48 6 chrX 78409830 78410418 -84189512 + MER4B LTR ERV1 3 779 0 1148 208 47 0 chrX 78410418 78410784 -84189146 - L1ME1 LINE L1 -635 5531 5151 1224 172 8 53 chrX 78410789 78411033 -84188897 - AluJo SINE Alu -14 298 66 1474 193 33 13 chrX 78411057 78411357 -84188573 + AluJo SINE Alu 1 306 -6 22 56 0 0 chrX 78411367 78411403 -84188527 + AT_rich Low_complexity Low_complexity 1 36 0 1519 186 16 34 chrX 78411412 78411793 -84188137 - L1ME1 LINE L1 -1037 5109 4736 185 304 264 0 chrX 78411840 78411965 -84187965 - MIR3 SINE MIR -21 187 30 2124 100 10 13 chrX 78412244 78412544 -84187386 - AluSq SINE Alu -14 299 1 24 0 0 0 chrX 78415526 78415550 -84184380 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 78415976 78415998 -84183932 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 78417136 78417157 -84182773 + AT_rich Low_complexity Low_complexity 1 21 0 184 250 77 0 chrX 78419164 78419216 -84180714 - L3b LINE CR1 -226 1357 1302 243 318 0 0 chrX 78419286 78419349 -84180581 - L2 LINE L2 -2 3270 3208 25 0 0 0 chrX 78421311 78421336 -84178594 + AT_rich Low_complexity Low_complexity 1 25 0 768 246 83 4 chrX 78422122 78422374 -84177556 - L1ME4a LINE L1 -5 6116 5845 187 49 49 49 chrX 78422432 78422473 -84177457 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 17945 163 26 13 chrX 78422517 78429641 -84170289 - L1MA1 LINE L1 0 7721 508 1310 138 28 119 chrX 78429642 78429969 -84169961 - AluYb8 SINE Alu -17 301 5 581 264 156 48 chrX 78430107 78430338 -84169592 + MIR SINE MIR 7 262 0 376 81 0 68 chrX 78430999 78431073 -84168857 - L1PA16 LINE L1 0 6166 6098 861 161 0 7 chrX 78431081 78431236 -84168694 + L1PA16 LINE L1 5879 6032 -134 2358 29 4 0 chrX 78431481 78431757 -84168173 - AluY SINE Alu 0 311 35 333 258 0 62 chrX 78432278 78432375 -84167555 + MIR SINE MIR 105 195 -67 204 349 30 0 chrX 78432913 78432979 -84166951 - L2 LINE L2 -3 3269 3202 368 382 0 18 chrX 78433022 78433187 -84166743 - MIR3 SINE MIR -6 202 41 298 245 21 75 chrX 78433270 78433364 -84166566 - MER5A DNA MER1_type 0 189 101 222 164 30 30 chrX 78433382 78433449 -84166481 + T-rich Low_complexity Low_complexity 2 68 0 8688 154 32 16 chrX 78433451 78436181 -84163749 - L1MA1 LINE L1 -13 6289 3515 513 274 20 7 chrX 78436181 78436334 -84163596 - L1MA1 LINE L1 -3508 2638 2484 * 18770 173 30 32 chrX 78436302 78440107 -84159823 - L1M4 LINE L1 -3750 3815 2 3298 199 29 0 chrX 78440103 78440787 -84159143 + L1MA6 LINE L1 4613 5316 -830 * 626 192 25 0 chrX 78440802 78440922 -84159008 + FRAM SINE Alu 38 160 -16 536 204 0 0 chrX 78440926 78441024 -84158906 - L1P LINE L1 -873 5273 5176 2076 90 16 28 chrX 78441037 78441360 -84158570 - LTR17 LTR ERV1 -456 324 6 3862 138 9 33 chrX 78441360 78441557 -84158373 - L1P LINE L1 -948 5198 4998 2279 108 0 0 chrX 78441557 78441862 -84158068 - AluSq SINE Alu -8 305 1 3862 138 9 33 chrX 78441862 78442353 -84157577 - L1P LINE L1 -1148 4998 4527 * 5884 102 21 1 chrX 78442352 78443197 -84156733 + L1PA11 LINE L1 5307 6168 -6 5302 158 27 7 chrX 78443186 78444153 -84155777 + L1MA6 LINE L1 5313 6298 -2 * 22 0 0 0 chrX 78444255 78444277 -84155653 + AT_rich Low_complexity Low_complexity 1 22 0 380 67 17 0 chrX 78444746 78444806 -84155124 + (CA)n Simple_repeat Simple_repeat 2 62 0 415 209 35 0 chrX 78445601 78445687 -84154243 + MER2 DNA MER2_type 1 89 -256 14695 171 27 13 chrX 78445692 78450137 -84149793 + L1M1 LINE L1 2509 7012 -709 1562 139 44 0 chrX 78450129 78450380 -84149550 - L1PA15 LINE L1 -101 6064 5803 * 2479 264 19 19 chrX 78450452 78451188 -84148742 + L1PA16 LINE L1 1911 2646 -3500 774 224 0 6 chrX 78451188 78451344 -84148586 - LTR32 LTR ERVL 0 471 317 1913 162 24 18 chrX 78451519 78451852 -84148078 - LTR32 LTR ERVL -122 349 15 10972 232 13 12 chrX 78451852 78454610 -84145320 + L1PA16 LINE L1 2642 5403 -743 281 125 0 54 chrX 78454613 78454669 -84145261 - L1P4 LINE L1 -711 5452 5400 4224 163 31 0 chrX 78454691 78455427 -84144503 + L1PA16 LINE L1 5408 6166 0 201 176 0 0 chrX 78455520 78455554 -84144376 + L3 LINE CR1 1541 1574 -3 969 168 5 16 chrX 78455671 78455861 -84144069 + L1MA6 LINE L1 6112 6299 -1 393 39 0 0 chrX 78456259 78456310 -84143620 + (TG)n Simple_repeat Simple_repeat 1 51 0 280 366 37 8 chrX 78457063 78457197 -84142733 + L2 LINE L2 2910 3047 -225 205 158 0 0 chrX 78457293 78457331 -84142599 + L2 LINE L2 3268 3305 -8 6977 164 32 5 chrX 78457495 78457888 -84142042 + L1PA13 LINE L1 3928 4309 -1854 2000 135 3 0 chrX 78457888 78458176 -84141754 + AluSx SINE Alu 9 297 -15 6977 164 32 5 chrX 78458176 78459933 -84139997 + L1PA13 LINE L1 4309 6137 -26 240 241 19 0 chrX 78459977 78460031 -84139899 - L2 LINE L2 0 3272 3218 726 241 11 17 chrX 78460326 78460500 -84139430 - MARNA DNA Mariner -345 241 69 1140 223 96 4 chrX 78461160 78461270 -84138660 + AluJb SINE Alu 8 106 -206 216 0 0 0 chrX 78461270 78461294 -84138636 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1140 223 96 4 chrX 78461294 78461443 -84138487 + AluJb SINE Alu 106 291 -21 4531 172 29 6 chrX 78461443 78462343 -84137587 - L1MB2 LINE L1 -36 6135 5215 6103 92 6 16 chrX 78462354 78463600 -84136330 - L1PB1 LINE L1 -1 6150 4898 2005 165 40 6 chrX 78463603 78463955 -84135975 + THE1B LTR MaLR 1 364 0 9398 97 3 14 chrX 78463958 78465248 -84134682 + THE1B-int LTR MaLR 3 1278 -302 2149 207 0 8 chrX 78465254 78465751 -84134179 + L1 LINE L1 4318 4810 -1336 2931 187 17 0 chrX 78465757 78466335 -84133595 - L1MB2 LINE L1 -1952 4194 3607 2637 229 26 0 chrX 78466358 78466973 -84132957 - L1 LINE L1 -961 5185 4555 1039 201 146 73 chrX 78467078 78467353 -84132577 - MSTD LTR MaLR 0 396 86 2398 94 3 0 chrX 78467353 78467660 -84132270 - AluSp SINE Alu -5 308 1 1039 201 146 73 chrX 78467660 78467753 -84132177 - MSTD LTR MaLR -310 86 1 201 304 89 36 chrX 78468186 78468298 -84131632 - MIR SINE MIR -116 146 29 2452 78 0 0 chrX 78470440 78470735 -84129195 + AluY SINE Alu 1 295 -16 5279 80 5 12 chrX 78471156 78477148 -84122782 + L1PA6 LINE L1 11 6154 0 22 56 0 0 chrX 78477924 78477960 -84121970 + AT_rich Low_complexity Low_complexity 1 36 0 585 222 7 15 chrX 78477982 78478117 -84121813 - MIR SINE MIR 0 262 129 447 329 22 7 chrX 78478256 78478393 -84121537 - MIR3 SINE MIR -64 144 6 207 0 0 0 chrX 78480676 78480699 -84119231 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 853 195 12 35 chrX 78480889 78481058 -84118872 - FAM SINE Alu -10 165 1 406 299 127 6 chrX 78481528 78481685 -84118245 + MIR3 SINE MIR 5 180 -28 21 36 0 0 chrX 78481726 78481754 -84118176 + AT_rich Low_complexity Low_complexity 1 28 0 229 409 15 0 chrX 78481829 78481966 -84117964 + L2 LINE L2 2916 3054 -218 2648 214 96 8 chrX 78482292 78483004 -84116926 - L1MC4a LINE L1 0 7808 7052 417 146 23 77 chrX 78483108 78483238 -84116692 - L1MC3 LINE L1 -727 7058 6936 303 232 0 0 chrX 78484151 78484220 -84115710 - MER69 DNA AcHobo -7 2519 2451 * 872 154 0 27 chrX 78484218 78484367 -84115563 - MER69 DNA AcHobo -2381 145 1 316 298 95 24 chrX 78485251 78485419 -84114511 - MER5A DNA MER1_type -6 183 4 642 224 94 36 chrX 78485514 78485737 -84114193 + MIR SINE MIR 1 236 -26 639 192 102 69 chrX 78486061 78486308 -84113622 + L1MC3 LINE L1 6416 6645 -1140 384 146 0 0 chrX 78486308 78486363 -84113567 + Tigger5 DNA MER2_type 1 55 -2268 322 224 0 0 chrX 78486384 78486442 -84113488 + Tigger5 DNA MER2_type 2264 2321 -2 3265 221 147 13 chrX 78486444 78487136 -84112794 + L1MC4 LINE L1 6701 7557 -485 779 80 9 0 chrX 78487136 78487248 -84112682 + (TA)n Simple_repeat Simple_repeat 2 114 0 3265 221 147 13 chrX 78487248 78487507 -84112423 + L1MC4 LINE L1 7557 7780 -262 211 242 121 15 chrX 78488233 78488299 -84111631 + L2 LINE L2 3200 3272 0 333 0 0 0 chrX 78488676 78488713 -84111217 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1708 173 13 13 chrX 78489464 78489776 -84110154 + AluJb SINE Alu 1 312 0 500 283 42 52 chrX 78490129 78490320 -84109610 - MIR SINE MIR -73 189 1 272 283 188 14 chrX 78490326 78490464 -84109466 + MIR3 SINE MIR 34 195 -13 947 122 0 45 chrX 78490492 78490648 -84109282 - Tigger7 DNA MER2_type 0 2487 2339 485 179 17 133 chrX 78490643 78490805 -84109125 - Tigger7 DNA MER2_type -389 344 203 2784 110 13 41 chrX 78490805 78491513 -84108417 + MER4E LTR ERV1 1 765 -1 1083 196 9 50 chrX 78491513 78491726 -84108204 - Tigger7 DNA MER2_type -529 204 1 291 300 20 10 chrX 78492354 78492454 -84107476 - MIR3 SINE MIR 0 208 108 6633 109 14 36 chrX 78492470 78492608 -84107322 + L1MA2 LINE L1 5179 5318 -986 1931 153 0 16 chrX 78492608 78492915 -84107015 + AluSx SINE Alu 11 312 0 6633 109 14 36 chrX 78492915 78493922 -84106008 + L1MA2 LINE L1 5318 6304 0 216 0 0 0 chrX 78494606 78494630 -84105300 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 285 244 13 26 chrX 78495616 78495694 -84104236 - MIR SINE MIR -69 139 63 534 251 18 18 chrX 78496241 78496408 -84103522 - HAL1b LINE L1 -383 965 799 1215 227 26 10 chrX 78496422 78496782 -84103148 - L1M4c LINE L1 -4316 2068 1609 407 127 0 13 chrX 78496793 78496865 -84103065 + L1M4 LINE L1 5615 5681 -499 1018 259 100 80 chrX 78497011 78497551 -84102379 + HAL1b LINE L1 70 629 -719 2045 127 0 13 chrX 78497551 78497850 -84102080 + AluSx SINE Alu 1 295 -17 1018 259 100 80 chrX 78497850 78498022 -84101908 + HAL1b LINE L1 629 796 -552 292 217 43 65 chrX 78498595 78498685 -84101245 - MIR3 SINE MIR -19 189 102 292 300 0 12 chrX 78498685 78498765 -84101165 + MIR SINE MIR 1 79 -183 436 312 41 45 chrX 78498765 78498986 -84100944 + MIR SINE MIR 43 262 0 252 299 52 31 chrX 78499002 78499099 -84100831 - MIR SINE MIR -94 114 16 349 153 0 0 chrX 78500553 78500612 -84099318 - L2 LINE L2 0 3272 3214 2904 93 7 0 chrX 78500669 78501077 -84098853 - L1PB2 LINE L1 -4 6147 5737 180 97 0 0 chrX 78502618 78502649 -84097281 + (TG)n Simple_repeat Simple_repeat 2 32 0 367 274 10 20 chrX 78503144 78503246 -84096684 - MIR3 SINE MIR -96 112 12 242 194 0 83 chrX 78503792 78503864 -84096066 - L1MC4 LINE L1 -1319 6723 6658 211 61 91 0 chrX 78504626 78504659 -84095271 - L3 LINE CR1 -456 1121 1086 891 287 189 29 chrX 78504819 78505376 -84094554 - L3 LINE CR1 -607 970 325 459 318 24 11 chrX 78505805 78505991 -84093939 + MIR SINE MIR 3 188 -74 446 380 60 42 chrX 78506624 78506958 -84092972 + L2 LINE L2 2334 2673 -641 181 336 143 25 chrX 78506967 78507086 -84092844 + L2 LINE L2 3180 3312 -1 35 0 0 0 chrX 78508250 78508285 -84091645 + AT_rich Low_complexity Low_complexity 1 35 0 1596 66 9 0 chrX 78508959 78509172 -84090758 - L1PA6 LINE L1 -1 6153 5939 186 43 0 0 chrX 78509489 78509512 -84090418 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 324 333 9 0 chrX 78509819 78509924 -84090006 - MIR SINE MIR -107 155 50 216 267 156 11 chrX 78510399 78510489 -84089441 + MIR SINE MIR 16 118 -90 3446 121 2 2 chrX 78511551 78512064 -84087866 - MER75 DNA T2_type -1 513 1 547 77 13 0 chrX 78513344 78513422 -84086508 + MADE1 DNA Mariner 1 79 -1 5550 144 39 19 chrX 78513636 78514569 -84085361 + L1M1 LINE L1 11 961 -6604 290 101 63 38 chrX 78514570 78514649 -84085281 + L1M1 LINE L1 3141 3221 -4344 1599 180 52 4 chrX 78514656 78514928 -84085002 + AluJb SINE Alu 3 287 -25 873 133 0 15 chrX 78515155 78515290 -84084640 - FLAM_C SINE Alu 0 133 1 351 78 0 0 chrX 78517042 78517093 -84082837 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2033 152 0 0 chrX 78518553 78518856 -84081074 - AluJb SINE Alu -9 303 1 22 35 0 0 chrX 78519765 78519794 -84080136 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 78521279 78521301 -84078629 + AT_rich Low_complexity Low_complexity 1 22 0 1222 224 3 16 chrX 78522163 78522476 -84077454 + L1MDb LINE L1 949 1257 -5152 565 115 85 79 chrX 78522996 78523161 -84076769 - MER53 DNA DNA -3 186 21 5136 159 58 16 chrX 78523174 78524565 -84075365 - L1MA4 LINE L1 -6 6294 4849 708 222 57 28 chrX 78524695 78524907 -84075023 - MLT1D LTR MaLR -113 392 175 7122 57 3 0 chrX 78525054 78526580 -84073350 + L1PA6 LINE L1 4625 6152 -2 283 356 92 59 chrX 78526827 78527130 -84072800 - L2 LINE L2 -46 3226 2914 1385 318 134 53 chrX 78527163 78527507 -84072423 - L2 LINE L2 -840 2474 2159 1998 110 24 14 chrX 78527507 78527828 -84072102 + AluSx SINE Alu 1 312 0 1385 318 134 53 chrX 78527828 78528853 -84071077 - L2 LINE L2 -1155 2159 994 318 339 173 21 chrX 78529390 78529532 -84070398 - L2 LINE L2 -909 2405 2286 1305 229 119 10 chrX 78529532 78529934 -84069996 + LTR2 LTR ERV1 3 448 -1 318 339 173 21 chrX 78529934 78530405 -84069525 - L2 LINE L2 -1028 2286 1699 551 322 91 5 chrX 78531047 78531255 -84068675 + MIR SINE MIR 1 226 -36 236 0 0 0 chrX 78533522 78533550 -84066380 - L1PA16 LINE L1 -9 6157 6130 310 261 36 51 chrX 78533630 78533768 -84066162 + L3b LINE CR1 1218 1353 -230 236 0 0 0 chrX 78536079 78536107 -84063823 - L1PA16 LINE L1 -9 6157 6130 23 33 0 0 chrX 78537755 78537785 -84062145 + AT_rich Low_complexity Low_complexity 1 30 0 2876 231 42 34 chrX 78538948 78539821 -84060109 - L1ME1 LINE L1 -5 6161 5274 2364 82 0 16 chrX 78539821 78540136 -84059794 - AluY SINE Alu -1 310 1 2876 231 42 34 chrX 78540136 78540633 -84059297 - L1ME1 LINE L1 -892 5274 4783 34 0 0 0 chrX 78540634 78540668 -84059262 + AT_rich Low_complexity Low_complexity 1 34 0 4066 177 19 22 chrX 78540669 78541616 -84058314 - L1PB4 LINE L1 -12 6144 5006 2590 116 3 0 chrX 78541617 78541996 -84057934 - L1PA11 LINE L1 0 6174 5795 4495 135 11 7 chrX 78541996 78542733 -84057197 + L1MA2 LINE L1 5555 6304 0 9881 174 37 23 chrX 78542747 78543975 -84055955 + L1MA4 LINE L1 3028 4236 -2064 1965 131 3 0 chrX 78543975 78544258 -84055672 + AluSx SINE Alu 1 284 -28 9881 174 37 23 chrX 78544258 78546261 -84053669 + L1MA4 LINE L1 4236 6300 0 195 139 0 0 chrX 78547129 78547165 -84052765 + (TC)n Simple_repeat Simple_repeat 2 37 0 972 133 0 0 chrX 78547182 78547362 -84052568 + (TA)n Simple_repeat Simple_repeat 1 180 0 325 221 70 23 chrX 78547371 78547457 -84052473 + L1MC4 LINE L1 6614 6703 -1339 963 134 0 0 chrX 78547463 78547642 -84052288 + (TA)n Simple_repeat Simple_repeat 1 179 0 3752 111 8 72 chrX 78547796 78548446 -84051484 - THE1C-int LTR MaLR -971 609 2 2178 108 26 37 chrX 78548447 78548826 -84051104 - THE1C LTR MaLR 0 375 1 388 285 92 62 chrX 78548830 78549198 -84050732 - L2 LINE L2 -1120 2194 1816 2497 81 0 0 chrX 78549223 78549531 -84050399 + AluSg SINE Alu 3 310 0 193 277 0 0 chrX 78550047 78550094 -84049836 + L2 LINE L2 3235 3281 -32 214 276 51 0 chrX 78550729 78550827 -84049103 + (CACCC)n Simple_repeat Simple_repeat 5 107 0 303 342 92 76 chrX 78550988 78551165 -84048765 - L1M2 LINE L1 -5598 1251 1078 306 0 0 0 chrX 78551165 78551199 -84048731 + (CGG)n Simple_repeat Simple_repeat 3 36 0 303 342 92 76 chrX 78551199 78551588 -84048342 - L1M2 LINE L1 -5771 1078 676 738 149 0 71 chrX 78554327 78554468 -84045462 - FLAM_A SINE Alu 0 133 3 401 314 77 32 chrX 78554557 78554777 -84045153 + MIR SINE MIR 5 234 -28 25 0 0 0 chrX 78555112 78555137 -84044793 + AT_rich Low_complexity Low_complexity 1 25 0 264 30 0 0 chrX 78555340 78555373 -84044557 + (TGG)n Simple_repeat Simple_repeat 2 34 0 323 355 81 19 chrX 78555553 78555922 -84044008 - L2 LINE L2 -447 2867 2476 279 79 0 0 chrX 78557073 78557111 -84042819 + (TG)n Simple_repeat Simple_repeat 1 38 0 294 73 0 0 chrX 78557111 78557152 -84042778 + (GA)n Simple_repeat Simple_repeat 2 42 0 570 245 103 7 chrX 78557410 78557565 -84042365 - MER5B DNA MER1_type -6 172 3 205 298 48 58 chrX 78558137 78558241 -84041689 - MIR SINE MIR -4 258 156 843 258 36 0 chrX 78558458 78558499 -84041431 + L1M4 LINE L1 4578 4616 -1530 189 0 0 0 chrX 78558499 78558520 -84041410 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 843 258 36 0 chrX 78558520 78558757 -84041173 + L1M4 LINE L1 4616 4866 -1280 2148 220 109 19 chrX 78559630 78560551 -84039379 - L1ME3 LINE L1 -307 5855 4834 26 30 0 0 chrX 78560624 78560657 -84039273 + AT_rich Low_complexity Low_complexity 1 33 0 26 23 0 23 chrX 78561062 78561082 -84038848 + AT_rich Low_complexity Low_complexity 1 20 -23 1908 133 11 3 chrX 78561082 78561368 -84038562 + AluJb SINE Alu 1 288 -24 26 23 0 23 chrX 78561368 78561391 -84038539 + AT_rich Low_complexity Low_complexity 20 43 0 703 204 186 18 chrX 78561642 78561863 -84038067 + MIR SINE MIR 2 259 -3 206 286 171 19 chrX 78562455 78562560 -84037370 + MIR SINE MIR 67 187 -75 225 125 75 0 chrX 78563673 78563713 -84036217 + MER2 DNA MER2_type 155 197 -148 248 125 42 21 chrX 78563727 78563775 -84036155 + MER2 DNA MER2_type 149 197 -148 917 158 20 0 chrX 78563814 78563960 -84035970 - MER2 DNA MER2_type -188 157 9 388 269 27 60 chrX 78564282 78564431 -84035499 - L2 LINE L2 -2 3311 3168 835 203 0 23 chrX 78565350 78565527 -84034403 + FRAM SINE Alu 1 173 -3 323 292 196 38 chrX 78565702 78565911 -84034019 - MIR SINE MIR -12 250 9 27 49 0 0 chrX 78566017 78566058 -84033872 + AT_rich Low_complexity Low_complexity 1 41 0 3866 152 9 5 chrX 78566060 78566697 -84033233 - L1MB2 LINE L1 -27 6144 5505 3966 71 1 97 chrX 78566858 78567508 -84032422 + L1PA8 LINE L1 5579 6166 -6 1661 231 53 40 chrX 78567809 78568445 -84031485 - MLT1E LTR MaLR 0 654 1 2281 108 0 9 chrX 78568512 78568827 -84031103 - AluSx SINE Alu 0 312 1 1968 152 13 0 chrX 78568983 78569286 -84030644 - AluSx SINE Alu -5 307 1 715 290 205 13 chrX 78570683 78571152 -84028778 - L2 LINE L2 -866 2448 1890 1346 214 25 31 chrX 78571250 78571370 -84028560 - L1ME1 LINE L1 -20 6146 6027 186 43 0 0 chrX 78571370 78571393 -84028537 + (CA)n Simple_repeat Simple_repeat 1 23 0 1346 214 25 31 chrX 78571393 78571627 -84028303 - L1ME1 LINE L1 -139 6027 5794 1235 236 67 15 chrX 78571625 78571968 -84027962 - L1ME1 LINE L1 -165 6001 5641 * 1401 244 84 55 chrX 78571978 78572235 -84027695 - L1MDa LINE L1 -4712 1828 1580 990 224 12 4 chrX 78572235 78572489 -84027441 - L1MB8 LINE L1 -9 6169 5914 1401 244 84 55 chrX 78572489 78573024 -84026906 - L1MDa LINE L1 -4960 1580 927 269 261 52 17 chrX 78573171 78573286 -84026644 - L1MDa LINE L1 -5664 866 748 311 330 65 23 chrX 78573576 78573837 -84026093 - L1MDa LINE L1 -6212 328 57 1038 221 20 0 chrX 78573998 78574197 -84025733 - MER58A DNA MER1_type -21 203 1 344 134 0 15 chrX 78575039 78575106 -84024824 - L1MB7 LINE L1 0 6184 6119 182 369 119 0 chrX 78575246 78575330 -84024600 - L3b LINE CR1 -38 1545 1452 2820 7 0 0 chrX 78575507 78575817 -84024113 - AluYb8 SINE Alu -8 310 1 316 341 55 31 chrX 78575817 78575971 -84023959 - MIR3 SINE MIR -8 200 35 339 216 68 0 chrX 78577850 78577923 -84022007 + Tigger5 DNA MER2_type 1 78 -2245 318 228 0 0 chrX 78577923 78577980 -84021950 - Tigger5 DNA MER2_type -3 2320 2264 346 155 35 0 chrX 78577982 78578040 -84021890 + Tigger5 DNA MER2_type 2264 2323 0 224 284 27 14 chrX 78578095 78578169 -84021761 - MIR SINE MIR -70 192 118 2178 178 11 3 chrX 78579120 78579502 -84020428 - MLT1B LTR MaLR -5 385 1 311 226 12 71 chrX 78579571 78579655 -84020275 + L2 LINE L2 3233 3311 -2 181 212 45 0 chrX 78580102 78580168 -84019762 + (TATG)n Simple_repeat Simple_repeat 2 70 0 454 299 36 66 chrX 78580203 78580370 -84019560 + MER5B DNA MER1_type 4 165 -13 535 143 109 8 chrX 78580833 78580952 -84018978 - L1MA9 LINE L1 -38 6274 6144 309 337 43 0 chrX 78581042 78581134 -84018796 - L2 LINE L2 -44 3228 3133 330 240 68 33 chrX 78581498 78581618 -84018312 - MIR3 SINE MIR -13 195 71 22 0 0 0 chrX 78581754 78581776 -84018154 + AT_rich Low_complexity Low_complexity 1 22 0 284 269 128 0 chrX 78582188 78582266 -84017664 + MIR3 SINE MIR 111 198 -10 1222 198 28 36 chrX 78583968 78584221 -84015709 - AluJo SINE Alu -25 287 37 243 103 0 0 chrX 78584490 78584529 -84015401 + (TGG)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chrX 78584854 78584878 -84015052 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 78585862 78585898 -84014032 + AT_rich Low_complexity Low_complexity 1 36 0 695 179 0 0 chrX 78586301 78586413 -84013517 - MLT1B LTR MaLR -274 116 5 347 226 0 60 chrX 78586482 78586566 -84013364 + L2 LINE L2 3233 3311 -2 422 243 29 0 chrX 78587199 78587302 -84012628 + Charlie1 DNA MER1_type 2 107 -2654 * 1963 223 79 6 chrX 78587301 78587781 -84012149 + Charlie1 DNA MER1_type 1464 1978 -783 231 224 0 0 chrX 78587802 78587851 -84012079 + Tigger1 DNA MER2_type 1 49 -2369 314 279 23 0 chrX 78587900 78587986 -84011944 - L1MC4 LINE L1 -1339 6703 6616 333 111 0 33 chrX 78587988 78588078 -84011852 + (TA)n Simple_repeat Simple_repeat 1 87 0 324 152 40 20 chrX 78588080 78588179 -84011751 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 308 115 0 71 chrX 78588185 78588367 -84011563 + (TA)n Simple_repeat Simple_repeat 2 170 0 13375 139 12 3 chrX 78588390 78590478 -84009452 + Tigger1 DNA MER2_type 140 2246 -172 575 110 22 0 chrX 78590787 78590923 -84009007 - L1MA5A LINE L1 -2 6295 5997 1735 173 0 16 chrX 78591563 78591869 -84008061 + AluJb SINE Alu 1 301 -11 22 70 0 0 chrX 78592207 78592250 -84007680 + AT_rich Low_complexity Low_complexity 1 43 0 219 292 31 15 chrX 78592653 78592718 -84007212 + MIR SINE MIR 2 67 -195 188 410 70 39 chrX 78593011 78593167 -84006763 - L2 LINE L2 -25 3247 3087 4228 206 46 11 chrX 78594003 78595845 -84004085 - L1ME1 LINE L1 -5 6230 4325 5378 250 51 16 chrX 78595863 78597868 -84002062 - L1ME1 LINE L1 -2154 4061 2035 613 264 0 20 chrX 78597868 78598016 -84001914 + MER58A DNA MER1_type 1 145 0 1258 263 8 16 chrX 78598018 78598395 -84001535 - L1ME1 LINE L1 -5583 813 440 2119 114 13 3 chrX 78598421 78598720 -84001210 - AluSx SINE Alu -10 302 1 2666 261 49 9 chrX 78598721 78599482 -84000448 - L1MEc LINE L1 -5571 825 35 387 41 0 0 chrX 78600332 78600381 -83999549 + (CA)n Simple_repeat Simple_repeat 2 50 0 269 308 0 34 chrX 78600438 78600584 -83999346 + L1ME4a LINE L1 4525 4665 -1481 1509 149 15 11 chrX 78600603 78600872 -83999058 - AluJb SINE Alu -10 302 33 1228 291 63 42 chrX 78601392 78602102 -83997828 + L1ME4a LINE L1 5321 6045 -76 520 276 113 8 chrX 78602207 78602443 -83997487 + MIR SINE MIR 2 259 -3 22 56 0 0 chrX 78602520 78602556 -83997374 + AT_rich Low_complexity Low_complexity 1 36 0 440 256 30 45 chrX 78603134 78603267 -83996663 - MIR SINE MIR -56 206 76 28 0 0 0 chrX 78604433 78604461 -83995469 + AT_rich Low_complexity Low_complexity 1 28 0 572 168 30 0 chrX 78604710 78604811 -83995119 - L1MD2 LINE L1 -351 6008 5905 * 1469 194 18 7 chrX 78604806 78605085 -83994845 + L1MD2 LINE L1 5624 5905 -454 33 66 0 0 chrX 78605422 78605483 -83994447 + AT_rich Low_complexity Low_complexity 1 61 0 989 54 78 0 chrX 78605971 78606100 -83993830 + MER85 DNA T2_type 1 139 0 191 61 30 0 chrX 78606476 78606509 -83993421 + (TTATA)n Simple_repeat Simple_repeat 1 34 0 1464 147 9 105 chrX 78606701 78607034 -83992896 - AluJo SINE Alu -11 301 1 2904 240 55 29 chrX 78607966 78608006 -83991924 - L1ME1 LINE L1 -12 6154 6117 855 166 53 16 chrX 78608006 78608193 -83991737 + L1MD1 LINE L1 6049 6242 0 2904 240 55 29 chrX 78608193 78608988 -83990942 - L1ME1 LINE L1 -49 6117 5297 23 0 0 0 chrX 78609006 78609029 -83990901 + AT_rich Low_complexity Low_complexity 1 23 0 18883 173 31 24 chrX 78609029 78613315 -83986615 - L1MA3 LINE L1 -2 7722 3466 2236 84 3 3 chrX 78613315 78613602 -83986328 - AluY SINE Alu -24 287 1 18883 173 31 24 chrX 78613602 78616541 -83983389 - L1MA3 LINE L1 -4258 3466 445 1724 94 0 13 chrX 78616541 78616774 -83983156 + AluSq SINE Alu 1 230 -83 18883 173 31 24 chrX 78616774 78617210 -83982720 - L1MA3 LINE L1 -7279 445 13 1346 179 84 11 chrX 78617210 78617557 -83982373 - L1ME1 LINE L1 -934 5212 4841 2054 201 20 42 chrX 78618163 78618714 -83981216 - L1ME1 LINE L1 -1302 4844 4306 219 282 137 38 chrX 78620871 78621002 -83978928 - L2 LINE L2 -1038 2276 2133 188 384 81 0 chrX 78622371 78622470 -83977460 - L3 LINE CR1 -291 1286 1180 22 70 0 0 chrX 78622843 78622886 -83977044 + AT_rich Low_complexity Low_complexity 1 43 0 12254 238 34 17 chrX 78623088 78624666 -83975264 - L1PB4 LINE L1 -14 7580 6030 1747 186 7 0 chrX 78624666 78624967 -83974963 - AluJo SINE Alu -7 305 3 12254 238 34 17 chrX 78624967 78628163 -83971767 - L1PB4 LINE L1 -1564 6030 2553 186 71 0 0 chrX 78628163 78628191 -83971739 + (TA)n Simple_repeat Simple_repeat 2 29 0 12254 238 34 17 chrX 78628191 78629000 -83970930 - L1PB4 LINE L1 -5041 2553 1759 417 292 48 110 chrX 78629185 78629476 -83970454 - L1PB4 LINE L1 -5781 1804 1532 366 375 59 0 chrX 78629889 78630041 -83969889 - L1PB4 LINE L1 -6018 1567 1407 1030 294 61 49 chrX 78630314 78630829 -83969101 - L1PB4 LINE L1 -6414 1171 14 341 287 108 19 chrX 78631877 78632034 -83967896 - L2 LINE L2 0 3313 3143 30 77 0 0 chrX 78634436 78634501 -83965429 + AT_rich Low_complexity Low_complexity 1 65 0 257 321 64 28 chrX 78635580 78635689 -83964241 - L2 LINE L2 0 3272 3160 1981 258 90 45 chrX 78635772 78636603 -83963327 - L1ME LINE L1 -5182 888 20 254 294 68 80 chrX 78637378 78637541 -83962389 - MIR3 SINE MIR -1 207 47 21 36 0 0 chrX 78638097 78638125 -83961805 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 78638364 78638400 -83961530 + AT_rich Low_complexity Low_complexity 1 36 0 319 173 19 0 chrX 78640057 78640109 -83959821 - MER5B DNA MER1_type 0 178 126 518 263 160 0 chrX 78640905 78641080 -83958850 + MIR SINE MIR 2 204 -58 21 36 0 0 chrX 78641672 78641700 -83958230 + AT_rich Low_complexity Low_complexity 1 28 0 1039 167 152 7 chrX 78643438 78643707 -83956223 - MER33 DNA MER1_type -7 317 10 24 32 0 0 chrX 78643783 78643814 -83956116 + AT_rich Low_complexity Low_complexity 1 31 0 282 29 0 0 chrX 78644484 78644519 -83955411 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2302 65 0 10 chrX 78644522 78644814 -83955116 - AluY SINE Alu -22 289 1 198 0 0 0 chrX 78644844 78644866 -83955064 + (T)n Simple_repeat Simple_repeat 1 22 0 228 86 0 0 chrX 78645108 78645143 -83954787 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3921 123 28 24 chrX 78645947 78646542 -83953388 - L1MA6 LINE L1 -257 6043 5443 2109 113 0 0 chrX 78646542 78646833 -83953097 - AluSc SINE Alu -18 291 1 3921 123 28 24 chrX 78646833 78646905 -83953025 - L1MA6 LINE L1 -857 5443 5373 264 189 0 0 chrX 78646898 78646951 -83952979 - L1M1 LINE L1 -5425 2140 2088 * 4867 71 18 19 chrX 78646964 78647650 -83952280 - L1PA10 LINE L1 -7 6161 5477 288 244 235 17 chrX 78648032 78648147 -83951783 - MIR3 SINE MIR -11 197 58 1749 143 76 25 chrX 78648357 78648714 -83951216 + THE1C LTR MaLR 1 375 0 21350 172 34 17 chrX 78649266 78655914 -83944016 + L1PA10 LINE L1 2 7569 -37 19289 103 13 0 chrX 78655914 78658779 -83941151 - L1P LINE L1 -842 5304 2403 2254 82 25 3 chrX 78658780 78659097 -83940833 - L1P3 LINE L1 -5134 1327 1004 * 7911 96 3 8 chrX 78659071 78660158 -83939772 - L1P3 LINE L1 -5377 1084 4 590 206 77 7 chrX 78660197 78660213 -83939717 - L1MA10 LINE L1 0 6334 6319 2330 231 65 48 chrX 78660213 78661007 -83938923 - L1ME1 LINE L1 -7 6228 5421 440 264 88 0 chrX 78661042 78661224 -83938706 - L1ME1 LINE L1 -886 5329 5132 1168 207 4 22 chrX 78661226 78661453 -83938477 + Tigger5 DNA MER2_type 1 223 -2100 4810 247 66 26 chrX 78661496 78663242 -83936688 - L1ME1 LINE L1 -1085 5130 3315 473 237 39 0 chrX 78663212 78663368 -83936562 - L1ME1 LINE L1 -3615 2600 2439 * 792 247 100 33 chrX 78663365 78663910 -83936020 - L1ME1 LINE L1 -4755 1641 973 2197 86 4 0 chrX 78663910 78664220 -83935710 - AluSg SINE Alu 0 311 1 792 247 100 33 chrX 78664220 78664472 -83935458 - L1ME1 LINE L1 -5423 973 739 12104 219 44 86 chrX 78664505 78668598 -83931332 - L1MA6 LINE L1 -1 6299 2590 10042 107 14 1 chrX 78668598 78670869 -83929061 - L1PA8 LINE L1 -1 6171 3865 12104 219 44 86 chrX 78670869 78673344 -83926586 - L1MA6 LINE L1 -3710 2590 12 205 216 0 0 chrX 78674010 78674047 -83925883 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chrX 78674293 78674336 -83925594 + AT_rich Low_complexity Low_complexity 1 43 0 402 21 0 0 chrX 78676209 78676256 -83923674 + (CTA)n Simple_repeat Simple_repeat 2 48 0 2472 64 10 3 chrX 78679743 78680054 -83919876 + AluSp SINE Alu 1 313 0 21 0 0 0 chrX 78681144 78681165 -83918765 + AT_rich Low_complexity Low_complexity 1 21 0 1846 54 0 38 chrX 78681675 78681914 -83918016 - AluY SINE Alu 0 311 82 317 281 119 27 chrX 78682789 78682974 -83916956 - MLT1K LTR MaLR -71 517 316 1982 247 214 15 chrX 78683334 78684080 -83915850 - L1MC4a LINE L1 -1540 6268 5374 2882 93 51 2 chrX 78684092 78684520 -83915410 + L1PA7 LINE L1 5703 6151 -3 515 276 70 59 chrX 78684587 78685229 -83914701 - L1MC4a LINE L1 -900 5246 4598 930 178 92 6 chrX 78685559 78685733 -83914197 + MER5A DNA MER1_type 1 189 0 1905 132 48 73 chrX 78685882 78686253 -83913677 - THE1B LTR MaLR 0 364 3 1898 74 0 0 chrX 78686255 78686498 -83913432 - THE1B-int LTR MaLR 0 1580 1338 2495 279 67 14 chrX 78686501 78687667 -83912263 + L1M4 LINE L1 2258 3485 -2661 3885 229 66 73 chrX 78687681 78689413 -83910517 + L1M4 LINE L1 3617 5335 -811 * 5475 43 0 0 chrX 78689409 78690100 -83909830 + L1P LINE L1 4674 5364 -782 2506 66 4 1 chrX 78690096 78690423 -83909507 - L1PA5 LINE L1 -98 6056 5730 * 2703 89 2 5 chrX 78690523 78690916 -83909014 - L1PA5 LINE L1 -1045 5101 4710 1484 45 0 0 chrX 78690916 78691094 -83908836 + L1PA5 LINE L1 5969 6147 -7 561 172 9 26 chrX 78691095 78691241 -83908689 + L1MD1 LINE L1 5290 5438 -724 1994 305 167 18 chrX 78691251 78692173 -83907757 + L1PBb LINE L1 10 1068 -5781 4438 245 23 70 chrX 78692390 78694433 -83905497 + L1PBb LINE L1 1045 3084 -3764 261 204 0 0 chrX 78694441 78694490 -83905440 + MSTB LTR MaLR 4 52 -374 3006 185 26 16 chrX 78694503 78696193 -83903737 + L1PB4 LINE L1 2 1947 -4916 365 164 0 0 chrX 78696195 78696256 -83903674 + MSTB1 LTR MaLR 372 432 0 6155 203 33 139 chrX 78696323 78698210 -83901720 + L1PB4 LINE L1 3177 5262 -1610 1473 156 99 29 chrX 78698210 78698566 -83901364 + MSTA LTR MaLR 1 428 0 8508 188 27 4 chrX 78698566 78700180 -83899750 + MSTA-int LTR MaLR 1 1651 0 2123 150 118 5 chrX 78700180 78700561 -83899369 + MSTA LTR MaLR 1 424 -4 6155 203 33 139 chrX 78700561 78702294 -83897636 + L1PB4 LINE L1 5259 6859 -13 3252 184 53 64 chrX 78702299 78702791 -83897139 + L1MD1 LINE L1 5428 5924 -318 2229 117 0 0 chrX 78702791 78703089 -83896841 - AluSx SINE Alu -14 298 1 3252 184 53 64 chrX 78703089 78703220 -83896710 + L1MD1 LINE L1 5924 6055 -187 1756 150 34 0 chrX 78703220 78703486 -83896444 + AluSx SINE Alu 1 275 -37 3252 184 53 64 chrX 78703486 78703684 -83896246 + L1MD1 LINE L1 6055 6241 -1 2432 91 21 16 chrX 78706577 78706951 -83892979 + L1MA2 LINE L1 5928 6303 -1 31 26 0 0 chrX 78706952 78706990 -83892940 + AT_rich Low_complexity Low_complexity 1 38 0 8454 203 19 13 chrX 78707015 78709487 -83890443 - L1 LINE L1 -1923 5642 3154 2376 163 71 6 chrX 78709495 78710003 -83889927 - L1 LINE L1 -4531 3034 2494 * 3068 249 25 14 chrX 78710001 78710721 -83889209 - L1 LINE L1 -6826 739 12 316 124 9 0 chrX 78710719 78710785 -83889145 + L1MB1 LINE L1 6100 6168 0 * 203 133 0 0 chrX 78710791 78710821 -83889109 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 3863 248 81 30 chrX 78710833 78711214 -83888716 + L1MB7 LINE L1 2770 3130 -3016 1443 235 7 7 chrX 78711214 78711512 -83888418 + AluJo SINE Alu 1 298 -14 3863 248 81 30 chrX 78711512 78712681 -83887249 + L1MB7 LINE L1 3130 4399 -1747 * 6150 217 67 20 chrX 78712677 78714284 -83885646 + L1PA14 LINE L1 1789 3470 -2676 7087 201 19 18 chrX 78714303 78716735 -83883195 + L1PA14 LINE L1 3716 6158 -3 2009 229 19 9 chrX 78716739 78717272 -83882658 + L1MB7 LINE L1 4396 4933 -1213 1299 207 16 69 chrX 78717270 78717633 -83882297 + L1MB7 LINE L1 5822 6165 -19 * 2569 116 190 8 chrX 78717737 78718379 -83881551 + MER4-int LTR ERV1 1 808 -5790 278 197 0 30 chrX 78718403 78718469 -83881461 + MER4-int LTR ERV1 687 750 -5848 5249 129 10 12 chrX 78718511 78718878 -83881052 + MER4-int LTR ERV1 800 1166 -3849 1984 132 0 14 chrX 78718878 78719230 -83880700 + AluSx SINE Alu 1 348 0 5249 129 10 12 chrX 78719230 78719724 -83880206 + MER4-int LTR ERV1 1166 1661 -3354 1348 171 0 0 chrX 78719730 78719947 -83879983 - LTR8 LTR ERV1 -474 217 1 2115 102 22 8 chrX 78719947 78720347 -83879583 + MER4-int LTR ERV1 2737 3142 -3456 1951 124 3 28 chrX 78720347 78720637 -83879293 + AluSq SINE Alu 1 283 -30 1291 137 42 73 chrX 78720642 78721000 -83878930 + MER4-int LTR ERV1 3304 3650 -2948 14976 112 61 15 chrX 78721019 78723559 -83876371 + MER4-int LTR ERV1 3837 6493 -105 514 136 237 8 chrX 78723580 78723698 -83876232 - MER4C LTR ERV1 -21 444 300 1222 142 136 54 chrX 78723759 78724075 -83875855 - MER4A LTR ERV1 -322 342 1 533 204 16 108 chrX 78724089 78724275 -83875655 - MER4A-int LTR ERV1 -4 6594 6426 825 107 0 0 chrX 78724389 78724511 -83875419 + (TA)n Simple_repeat Simple_repeat 2 123 0 22 0 0 0 chrX 78724701 78724723 -83875207 + AT_rich Low_complexity Low_complexity 1 22 0 1568 310 37 25 chrX 78724840 78725546 -83874384 - MER4C-int LTR ERV1 -433 6689 5976 3775 79 2 33 chrX 78725713 78726255 -83873675 - L1PA6 LINE L1 -8 6146 5622 28873 103 7 14 chrX 78726256 78730540 -83869390 - L1PA6 LINE L1 -1885 4261 11 344 291 0 0 chrX 78730595 78730681 -83869249 - MER4C-int LTR ERV1 -1404 5718 5633 630 339 46 44 chrX 78730990 78731710 -83868220 - MER4C-int LTR ERV1 -1750 2897 2177 491 309 69 60 chrX 78732326 78733909 -83866021 - MER4C-int LTR ERV1 -2917 4773 3222 2340 106 3 0 chrX 78734422 78734734 -83865196 + AluSq SINE Alu 1 313 0 269 317 40 30 chrX 78735673 78735872 -83864058 - MER4C-int LTR ERV1 -5366 1435 1235 251 204 0 0 chrX 78736531 78736575 -83863355 - MER4C-int LTR ERV1 -5804 794 751 289 313 31 62 chrX 78736788 78736916 -83863014 - MER4C-int LTR ERV1 -6266 492 369 740 193 73 42 chrX 78736940 78737473 -83862457 - MER4C-int LTR ERV1 -5927 671 1 577 151 197 33 chrX 78737485 78737637 -83862293 - MER4C LTR ERV1 -8 457 281 1238 129 155 52 chrX 78737675 78737984 -83861946 - MER4A LTR ERV1 -323 341 1 622 137 0 0 chrX 78737984 78738079 -83861851 + MER4A-int LTR ERV1 6490 6584 -14 580 121 10 20 chrX 78738095 78738194 -83861736 + MER4A LTR ERV1 1 98 -566 1623 149 33 8 chrX 78738194 78738529 -83861401 + MER4A LTR ERV1 263 664 0 436 302 38 19 chrX 78738676 78738835 -83861095 - MER5A DNA MER1_type -20 169 8 4423 111 9 8 chrX 78738956 78739589 -83860341 + MER4A LTR ERV1 31 664 0 249 299 15 0 chrX 78739976 78740043 -83859887 - MIR SINE MIR -65 143 76 383 316 41 1 chrX 78740113 78740265 -83859665 - MIR SINE MIR -24 238 67 217 218 26 90 chrX 78740718 78740796 -83859134 + L2 LINE L2 3200 3272 0 205 283 232 0 chrX 78741279 78741378 -83858552 - L2 LINE L2 -8 3305 3184 294 368 92 11 chrX 78741443 78741628 -83858302 - L2 LINE L2 -213 3059 2860 615 346 23 0 chrX 78741874 78742115 -83857815 - MIR SINE MIR -3 259 16 638 282 29 0 chrX 78742305 78742475 -83857455 - MIR SINE MIR -75 187 13 364 314 0 10 chrX 78742539 78742641 -83857289 - L2 LINE L2 -1 3271 3171 449 263 88 32 chrX 78742661 78742844 -83857086 + L1M1 LINE L1 5546 5737 -399 295 276 0 13 chrX 78742908 78742984 -83856946 + L2 LINE L2 3238 3312 -1 357 325 74 16 chrX 78743163 78743406 -83856524 + L1ME4a LINE L1 5865 6121 0 816 203 33 0 chrX 78743413 78743566 -83856364 + FAM SINE Alu 1 158 -17 198 103 0 0 chrX 78743566 78743595 -83856335 + (TAAG)n Simple_repeat Simple_repeat 3 31 0 2871 261 65 53 chrX 78743744 78744918 -83855012 + L1MCb LINE L1 1 1188 -4857 1088 133 0 0 chrX 78744919 78745070 -83854860 + AluSg/x SINE Alu 148 298 -14 2100 114 0 0 chrX 78745070 78745385 -83854545 + AluSx SINE Alu 4 318 0 1004 132 54 6 chrX 78745385 78745552 -83854378 - MSTA LTR MaLR -253 175 1 255 261 76 8 chrX 78746125 78746244 -83853686 - L1MC/D LINE L1 -1914 5894 5768 2503 225 61 5 chrX 78746257 78746896 -83853034 - L1MB7 LINE L1 -10 6672 5998 343 194 0 0 chrX 78746893 78746960 -83852970 - L1MB7 LINE L1 -1534 5110 5044 * 259 241 0 0 chrX 78746968 78747022 -83852908 - L1MB7 LINE L1 -5316 1226 1173 627 266 7 0 chrX 78747024 78747178 -83852752 - L1MB7 LINE L1 -6384 158 4 416 268 116 0 chrX 78747191 78747355 -83852575 - L1MC/D LINE L1 -2040 5768 5586 1111 225 13 5 chrX 78747379 78747849 -83852081 + ERVL-D LTR ERVL 5225 5757 -7 462 191 21 0 chrX 78747849 78747943 -83851987 + MLT2D LTR ERVL 1 96 -318 4120 158 30 0 chrX 78747968 78748677 -83851253 - L1PA15 LINE L1 -8 6157 5428 10309 117 2 0 chrX 78748684 78750993 -83848937 - L1PA7 LINE L1 -8 6797 4483 8329 260 32 21 chrX 78751007 78755296 -83844634 - L1PA7 LINE L1 -2414 4383 1 1161 166 62 27 chrX 78755321 78755580 -83844350 - L1MA9 LINE L1 -37 6275 6008 244 157 0 0 chrX 78755594 78755645 -83844285 + L1MB3 LINE L1 6131 6181 -2 28 29 0 0 chrX 78755698 78755733 -83844197 + AT_rich Low_complexity Low_complexity 1 35 0 1763 175 29 35 chrX 78755734 78756111 -83843819 + THE1C LTR MaLR 1 375 0 1462 194 21 88 chrX 78757492 78757879 -83842051 - L1PB4 LINE L1 0 6156 5796 282 237 0 0 chrX 78757879 78757976 -83841954 + (TG)n Simple_repeat Simple_repeat 2 98 0 584 155 0 0 chrX 78758015 78758112 -83841818 - L1PB4 LINE L1 -382 5774 5678 691 50 20 10 chrX 78758112 78758212 -83841718 + (TTTC)n Simple_repeat Simple_repeat 4 104 0 650 259 88 6 chrX 78758213 78758383 -83841547 - AluJo SINE Alu -33 279 96 2331 190 7 14 chrX 78758388 78758803 -83841127 - MSTB LTR MaLR -7 419 8 358 260 10 30 chrX 78758810 78758910 -83841020 - AluJo SINE Alu -204 98 1 2168 177 22 16 chrX 78758911 78759525 -83840405 - L1PB4 LINE L1 -470 5686 5070 5651 154 20 5 chrX 78759572 78760796 -83839134 - L1PB2 LINE L1 -2 6149 4908 22 0 0 0 chrX 78761424 78761446 -83838484 + AT_rich Low_complexity Low_complexity 1 22 0 436 367 61 20 chrX 78761581 78761990 -83837940 + MER57B-int LTR ERV1 2549 2974 -3827 436 328 28 31 chrX 78761957 78762274 -83837656 + MER57B-int LTR ERV1 3690 4005 -4421 985 216 10 0 chrX 78762426 78762620 -83837310 + MER57B-int LTR ERV1 5985 6180 -1357 456 271 36 7 chrX 78764165 78764305 -83835625 + MER57B-int LTR ERV1 7015 7158 -658 379 182 13 39 chrX 78764428 78764537 -83835393 + MER57B-int LTR ERV1 7208 7531 -6 1869 177 114 15 chrX 78764541 78764936 -83834994 + MER57B LTR ERV1 1 434 0 707 183 43 91 chrX 78764938 78765124 -83834806 - L1M1 LINE L1 -7377 188 12 496 253 19 53 chrX 78765126 78765391 -83834539 - L1M3b LINE L1 -2949 3401 3146 * 19107 171 17 6 chrX 78765389 78769893 -83830037 - L1PA10 LINE L1 0 7606 3059 1632 263 129 54 chrX 78769881 78770561 -83829369 - L1PA10 LINE L1 -6297 1284 9 * 3444 262 35 27 chrX 78770573 78771068 -83828862 - L1PBb LINE L1 -3191 3012 2522 396 0 0 0 chrX 78771068 78771112 -83828818 + (TA)n Simple_repeat Simple_repeat 2 45 0 3444 262 35 27 chrX 78771112 78772852 -83827078 - L1PBb LINE L1 -3681 2522 749 849 234 53 20 chrX 78772924 78773227 -83826703 - L1M3b LINE L1 -4538 1743 1431 5547 124 10 8 chrX 78773237 78774971 -83824959 - L1PA14 LINE L1 -13 6148 4414 4094 167 25 40 chrX 78774972 78776029 -83823901 + L1PA12 LINE L1 2381 3447 -4137 1134 284 14 11 chrX 78776057 78776427 -83823503 - L1M3b LINE L1 -4865 1416 1046 303 28 0 0 chrX 78776833 78776869 -83823061 + (CA)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chrX 78776939 78776966 -83822964 + (TA)n Simple_repeat Simple_repeat 1 27 0 381 257 29 21 chrX 78777011 78777151 -83822779 - L1 LINE L1 -1004 5142 5002 * 2023 195 78 7 chrX 78777148 78777594 -83822336 - L1PB4 LINE L1 -2 6154 5677 24 0 0 0 chrX 78777594 78777618 -83822312 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chrX 78777725 78777761 -83822169 + AT_rich Low_complexity Low_complexity 1 36 0 6012 175 12 20 chrX 78777761 78778114 -83821816 - L1PB2 LINE L1 -2 6149 5795 285 29 0 0 chrX 78778114 78778148 -83821782 + (TG)n Simple_repeat Simple_repeat 2 35 0 6012 175 12 20 chrX 78778148 78778171 -83821759 - L1PB2 LINE L1 -356 5795 5773 474 18 0 0 chrX 78778171 78778226 -83821704 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 6012 175 12 20 chrX 78778226 78780181 -83819749 - L1PB2 LINE L1 -378 5773 3841 * 21638 115 8 2 chrX 78780173 78783694 -83816236 - L1P3 LINE L1 -614 5558 2013 1056 122 0 0 chrX 78783699 78783863 -83816067 + (TA)n Simple_repeat Simple_repeat 1 164 0 4259 123 14 4 chrX 78783863 78784569 -83815361 + L1P LINE L1 2851 3563 -2583 429 214 0 0 chrX 78784570 78784668 -83815262 + (TA)n Simple_repeat Simple_repeat 2 99 0 330 283 0 22 chrX 78784676 78784768 -83815162 - L1MC4 LINE L1 -1339 6703 6614 186 133 0 0 chrX 78784768 78784798 -83815132 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 2388 120 0 0 chrX 78784802 78785160 -83814770 - L1P3 LINE L1 -5103 1358 1001 3528 240 79 19 chrX 78785160 78786439 -83813491 - L1 LINE L1 -816 5330 3975 9780 196 21 12 chrX 78786444 78789719 -83810211 - L1PB1 LINE L1 -1 6150 2849 1081 319 97 58 chrX 78789746 78790439 -83809491 + L1M2 LINE L1 235 954 -5895 1446 321 32 30 chrX 78790733 78791291 -83808639 + L1PB4 LINE L1 192 750 -6037 * 4308 256 44 30 chrX 78791278 78792726 -83807204 + L1PB4 LINE L1 1232 2658 -4139 2185 116 6 0 chrX 78792726 78793037 -83806893 + AluSq SINE Alu 1 313 0 4308 256 44 30 chrX 78793037 78793368 -83806562 + L1PB4 LINE L1 2658 2983 -3814 1924 113 3 62 chrX 78793368 78793677 -83806253 + AluSq SINE Alu 14 304 -9 4308 256 44 30 chrX 78793677 78794038 -83805892 + L1PB4 LINE L1 2983 3338 -3459 288 0 0 0 chrX 78794038 78794070 -83805860 + (CAA)n Simple_repeat Simple_repeat 1 32 0 4308 256 44 30 chrX 78794070 78794209 -83805721 + L1PB4 LINE L1 3338 3474 -3323 2173 109 13 7 chrX 78794209 78794513 -83805417 + AluSg SINE Alu 1 306 -4 4308 256 44 30 chrX 78794513 78794670 -83805260 + L1PB4 LINE L1 3474 3714 -3083 15159 215 32 25 chrX 78794683 78801446 -83798484 + L1PA13 LINE L1 3 6807 -7 7592 233 17 21 chrX 78801435 78804553 -83795377 + L1PB4 LINE L1 3689 6796 -11 * 203 190 35 17 chrX 78804564 78804622 -83795308 + A-rich Low_complexity Low_complexity 2 60 0 5585 179 12 5 chrX 78805648 78806828 -83793102 - L1PA13 LINE L1 -731 5432 4249 4774 104 24 3 chrX 78806828 78807528 -83792402 + L1PA13 LINE L1 5438 6160 -3 2184 135 119 8 chrX 78807939 78808324 -83791606 - MSTA LTR MaLR 0 428 1 1662 150 41 72 chrX 78808899 78809286 -83790644 + THE1C LTR MaLR 1 375 0 316 424 62 5 chrX 78809290 78809514 -83790416 - L2 LINE L2 -565 2749 2513 1777 132 0 7 chrX 78810325 78810606 -83789324 - L1PA8 LINE L1 -2419 3727 3449 10752 108 2 12 chrX 78810606 78813020 -83786910 + L1PA8 LINE L1 3757 6171 -1 651 276 30 9 chrX 78813038 78813270 -83786660 - L1MB7 LINE L1 -58 6126 5890 1395 283 92 2 chrX 78813271 78813685 -83786245 + MLT2B1 LTR ERVL 6 456 -64 355 356 83 46 chrX 78813702 78814205 -83785725 + L1PBb LINE L1 8 529 -6320 * 365 346 11 16 chrX 78814173 78814361 -83785569 + L1PBa LINE L1 1414 1600 -5249 326 367 38 41 chrX 78814416 78814735 -83785195 + L1PBb LINE L1 698 1015 -5834 9723 243 60 51 chrX 78814846 78816898 -83783032 + L1PBb LINE L1 999 3031 -3817 201 74 0 0 chrX 78816898 78816925 -83783005 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 9723 243 60 51 chrX 78816925 78819077 -83780853 + L1PBb LINE L1 3031 5451 -1397 2499 61 3 3 chrX 78819077 78819388 -83780542 + AluY SINE Alu 1 311 0 9723 243 60 51 chrX 78819388 78819894 -83780036 + L1PBb LINE L1 5451 5951 -897 1504 240 41 13 chrX 78819931 78820008 -83779922 - L1M1 LINE L1 -4255 2594 2521 216 0 0 0 chrX 78820008 78820032 -83779898 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1504 240 41 13 chrX 78820032 78820426 -83779504 - L1M1 LINE L1 -4328 2521 1815 1016 293 108 7 chrX 78820435 78820742 -83779188 - MER2 DNA MER2_type 0 345 8 1178 220 50 22 chrX 78820757 78821130 -83778800 - L1M1 LINE L1 -4642 2137 1740 7654 18 9 0 chrX 78821278 78822185 -83777745 + L1PA3 LINE L1 5238 6152 -3 520 277 24 89 chrX 78822242 78822534 -83777396 - L1M1 LINE L1 -4925 1844 1572 321 303 23 29 chrX 78822863 78823039 -83776891 - L1M1 LINE L1 -5738 1031 647 1412 265 50 17 chrX 78823043 78823567 -83776363 + L1M4 LINE L1 4849 5389 -757 * 1661 148 18 0 chrX 78823553 78823963 -83775967 + L1PB1 LINE L1 5112 5526 -625 3977 100 3 12 chrX 78824063 78824652 -83775278 + L1PB1 LINE L1 5567 6150 -1 231 88 0 0 chrX 78824859 78824893 -83775037 + (TG)n Simple_repeat Simple_repeat 1 34 0 310 170 0 0 chrX 78824909 78824962 -83774968 - L1MB1 LINE L1 -26 6163 6111 899 223 23 0 chrX 78825084 78825304 -83774626 + L1MA6 LINE L1 6071 6295 -5 997 26 0 0 chrX 78825485 78825601 -83774329 - L1P LINE L1 -1477 4669 4554 2161 161 52 15 chrX 78825601 78825736 -83774194 - L1MA9 LINE L1 -13 6299 6170 324 0 0 0 chrX 78825736 78825772 -83774158 + (TG)n Simple_repeat Simple_repeat 1 36 0 2161 161 52 15 chrX 78825772 78826097 -83773833 - L1MA9 LINE L1 -142 6170 5822 236 215 15 15 chrX 78826098 78826163 -83773767 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1039 161 8 37 chrX 78826176 78826419 -83773511 - L1M4 LINE L1 -370 6068 5837 2988 210 19 0 chrX 78876421 78877054 -83722876 - L1P LINE L1 -1478 4668 4024 9305 208 26 14 chrX 78877054 78879338 -83720592 - L1M4 LINE L1 -764 5642 3330 3585 33 0 0 chrX 78879341 78879860 -83720070 - L1PA2 LINE L1 -680 5475 4957 5528 12 55 0 chrX 78879860 78880507 -83719423 + L1PA2 LINE L1 5470 6155 0 2206 214 25 38 chrX 78880535 78881142 -83718788 - L1M4 LINE L1 -3104 3302 2704 834 248 35 9 chrX 78881141 78881371 -83718559 + L1 LINE L1 2213 2448 -3698 * 2187 313 53 43 chrX 78881357 78881407 -83718523 - L1M4 LINE L1 -5445 964 916 775 191 0 0 chrX 78881407 78881533 -83718397 - FLAM_A SINE Alu -7 126 1 2187 313 53 43 chrX 78881533 78882432 -83717498 - L1M4 LINE L1 -5493 916 6 4693 146 20 7 chrX 78882498 78883975 -83715955 - L1PA16 LINE L1 -2 6164 4679 265 273 45 23 chrX 78884046 78884134 -83715796 + MER5A DNA MER1_type 26 115 -74 22 0 0 0 chrX 78884304 78884326 -83715604 + AT_rich Low_complexity Low_complexity 1 22 0 1304 181 154 0 chrX 78885046 78885339 -83714591 - MER44D DNA MER2_type -1 608 1 213 341 35 24 chrX 78887222 78887307 -83712623 - L3b LINE CR1 -212 1371 1286 1052 291 70 10 chrX 78887528 78887940 -83711990 + MARNA DNA Mariner 33 469 -117 21 36 0 0 chrX 78889128 78889156 -83710774 + AT_rich Low_complexity Low_complexity 1 28 0 256 262 16 0 chrX 78889548 78889609 -83710321 + L2 LINE L2 3250 3311 -2 22 0 0 0 chrX 78890323 78890345 -83709585 + AT_rich Low_complexity Low_complexity 1 22 0 13362 204 78 14 chrX 78891296 78893925 -83706005 + L1MB8 LINE L1 1 2461 -4407 2243 52 7 0 chrX 78893925 78894216 -83705714 + L1PA4 LINE L1 5859 6151 -4 13362 204 78 14 chrX 78894216 78897244 -83702686 + L1MB8 LINE L1 2461 6027 -841 * 20926 164 43 1 chrX 78897238 78901232 -83698698 + L1MA3 LINE L1 1 4161 -3404 12131 171 20 10 chrX 78903087 78903262 -83696668 + L1MA3 LINE L1 4155 4327 -3397 2441 77 0 0 chrX 78903262 78903573 -83696357 + AluY SINE Alu 1 311 0 12131 171 20 10 chrX 78903573 78906633 -83693297 + L1MA3 LINE L1 4327 7426 -298 26 30 0 0 chrX 78906774 78906807 -83693123 + AT_rich Low_complexity Low_complexity 1 33 0 293 301 41 0 chrX 78906807 78906953 -83692977 + L1M4 LINE L1 4391 4542 -1604 1487 179 43 17 chrX 78906953 78907300 -83692630 + L1MB8 LINE L1 6524 6879 -1 263 268 21 82 chrX 78907374 78907471 -83692459 + MIR3 SINE MIR 86 176 -32 6913 60 7 0 chrX 78908240 78909926 -83690004 + L1PA7 LINE L1 4455 6146 -8 503 274 26 65 chrX 78910360 78910590 -83689340 - MIR SINE MIR -30 232 12 22 0 0 0 chrX 78910778 78910800 -83689130 + AT_rich Low_complexity Low_complexity 1 22 0 441 297 225 6 chrX 78910884 78911066 -83688864 + MIR SINE MIR 41 262 0 2276 97 7 0 chrX 78911447 78911757 -83688173 + AluSx SINE Alu 1 312 0 549 230 24 12 chrX 78913932 78914097 -83685833 + L1ME LINE L1 5582 5748 -373 341 321 80 16 chrX 78914156 78914343 -83685587 - L1ME LINE L1 -301 5820 5622 301 318 40 8 chrX 78914367 78914493 -83685437 - L1ME LINE L1 -587 5534 5405 25 83 0 0 chrX 78914698 78914758 -83685172 + AT_rich Low_complexity Low_complexity 1 60 0 22 94 0 0 chrX 78914777 78914841 -83685089 + AT_rich Low_complexity Low_complexity 1 64 0 670 190 0 0 chrX 78914974 78915090 -83684840 + FLAM_C SINE Alu 1 116 -17 378 0 0 0 chrX 78915346 78915388 -83684542 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 36 0 0 0 chrX 78915521 78915557 -83684373 + AT_rich Low_complexity Low_complexity 1 36 0 261 333 29 0 chrX 78915564 78915669 -83684261 - MIR SINE MIR -99 163 56 2403 78 0 3 chrX 78918110 78918419 -83681511 + AluSq SINE Alu 1 308 -5 25 75 0 0 chrX 78920083 78920136 -83679794 + AT_rich Low_complexity Low_complexity 1 53 0 1107 172 0 0 chrX 78920496 78920676 -83679254 + AluJb SINE Alu 133 312 0 201 229 0 0 chrX 78920676 78920724 -83679206 + GA-rich Low_complexity Low_complexity 4 51 0 189 367 122 0 chrX 78922053 78922151 -83677779 + MIR SINE MIR 34 143 -65 1314 196 19 31 chrX 78922708 78922968 -83676962 + AluJo SINE Alu 34 290 -22 3320 219 62 15 chrX 78923187 78924103 -83675827 - L1ME1 LINE L1 -18 6082 5131 * 3530 258 56 37 chrX 78924090 78925451 -83674479 - L1ME1 LINE L1 -1628 4452 3066 292 271 52 31 chrX 78925453 78925549 -83674381 - L2 LINE L2 -9 3304 3207 4284 224 53 20 chrX 78925807 78926404 -83673526 - L1PA16 LINE L1 -1 6559 5983 2245 138 13 19 chrX 78926404 78926781 -83673149 - THE1C LTR MaLR 0 375 1 9219 121 54 39 chrX 78926781 78928338 -83671592 - THE1C-int LTR MaLR 0 1580 1 2226 139 19 16 chrX 78928338 78928712 -83671218 - THE1C LTR MaLR 0 375 1 4284 224 53 20 chrX 78928712 78929512 -83670418 - L1PA16 LINE L1 -577 5983 5210 1820 157 21 0 chrX 78929512 78929799 -83670131 - AluSx SINE Alu -19 293 1 4284 224 53 20 chrX 78929799 78931438 -83668492 - L1PA16 LINE L1 -1350 5210 1128 317 336 84 26 chrX 78931654 78931880 -83668050 - L1ME1 LINE L1 -5574 496 258 333 324 39 19 chrX 78932090 78932297 -83667633 - L1ME1 LINE L1 -5858 212 2 369 0 0 0 chrX 78932426 78932467 -83667463 + (CA)n Simple_repeat Simple_repeat 2 42 0 217 231 0 0 chrX 78933867 78933906 -83666024 + L2 LINE L2 3249 3287 -26 845 316 91 5 chrX 78933906 78934457 -83665473 - L1MEc LINE L1 -2510 3705 3108 4434 277 44 35 chrX 78934474 78934824 -83665106 - L1MEc LINE L1 -4426 1970 1625 568 0 0 0 chrX 78934824 78934889 -83665041 - L1PA4 LINE L1 -8 6147 6083 4434 277 44 35 chrX 78934889 78936386 -83663544 - L1MEc LINE L1 -4771 1625 102 189 0 0 0 chrX 78936386 78936407 -83663523 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4434 277 44 35 chrX 78936407 78936474 -83663456 - L1MEc LINE L1 -6294 102 37 331 295 21 54 chrX 78936489 78936703 -83663227 + MIR SINE MIR 7 211 -51 1484 96 10 0 chrX 78937013 78937212 -83662718 - AluSq SINE Alu -12 301 101 1721 83 4 4 chrX 78937867 78938109 -83661821 + L1MA2 LINE L1 6061 6302 -2 22 35 0 0 chrX 78938110 78938139 -83661791 + AT_rich Low_complexity Low_complexity 1 29 0 4649 119 16 27 chrX 78938805 78939571 -83660359 + L1MA8 LINE L1 5513 6269 -22 878 232 21 5 chrX 78939862 78940056 -83659874 + MLT1D LTR MaLR 294 490 -15 482 233 125 28 chrX 78940452 78940621 -83659309 - MER5A DNA MER1_type 0 189 4 1503 181 91 28 chrX 78940990 78941343 -83658587 + THE1C LTR MaLR 1 375 0 297 169 0 0 chrX 78941793 78941852 -83658078 + (TG)n Simple_repeat Simple_repeat 2 60 0 290 277 60 12 chrX 78941918 78942001 -83657929 + MIR SINE MIR 7 93 -169 396 0 0 0 chrX 78942923 78942967 -83656963 + (CA)n Simple_repeat Simple_repeat 1 44 0 209 362 0 14 chrX 78942968 78943037 -83656893 + MIR SINE MIR 33 100 -108 641 286 60 9 chrX 78943053 78943270 -83656660 + MIR SINE MIR 35 262 0 355 271 62 0 chrX 78943280 78943376 -83656554 + MIR3 SINE MIR 98 199 -9 243 0 0 0 chrX 78944547 78944574 -83655356 + (CA)n Simple_repeat Simple_repeat 2 28 0 204 40 0 0 chrX 78944574 78944599 -83655331 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1096 312 146 9 chrX 78947671 78948256 -83651674 + L2 LINE L2 2651 3311 -2 1185 289 77 54 chrX 78948625 78949442 -83650488 + L2 LINE L2 2460 3313 0 1712 325 131 13 chrX 78949524 78950318 -83649612 + L3 LINE CR1 630 1517 -60 851 209 0 33 chrX 78950842 78951024 -83648906 - FRAM SINE Alu 0 40 1 786 242 39 0 chrX 78951560 78951742 -83648188 + MER5A DNA MER1_type 1 189 0 207 222 0 0 chrX 78951783 78951828 -83648102 - L2 LINE L2 -5 3308 3264 1990 139 0 19 chrX 78953169 78953479 -83646451 - AluSx SINE Alu -8 304 1 236 299 15 30 chrX 78953481 78953548 -83646382 - MIR SINE MIR -61 147 82 967 205 24 5 chrX 78955341 78955546 -83644384 - MER63A DNA MER1_type -1 209 1 4140 98 26 2 chrX 78956167 78956787 -83643143 + L1MA1 LINE L1 5661 6295 -7 25 23 0 23 chrX 78956787 78956803 -83643127 + AT_rich Low_complexity Low_complexity 1 16 -26 2934 130 13 39 chrX 78956803 78957348 -83642582 + L1MA4 LINE L1 5769 6299 -1 25 23 0 23 chrX 78957348 78957374 -83642556 + AT_rich Low_complexity Low_complexity 16 42 0 190 358 130 8 chrX 78957803 78957926 -83642004 - MIR SINE MIR -5 257 120 605 239 174 14 chrX 78958134 78958347 -83641583 - MIR SINE MIR -14 248 2 586 278 61 17 chrX 78958395 78958690 -83641240 + L1MC5 LINE L1 7609 7916 -45 8746 56 1 2 chrX 78958766 78959837 -83640093 - MER11C LTR ERVK -1 1070 1 419 174 35 83 chrX 78960089 78960233 -83639697 + L2 LINE L2 3103 3239 -74 5839 115 12 39 chrX 78960238 78960597 -83639333 - L1PB1 LINE L1 -1 6150 5783 258 105 0 0 chrX 78960597 78960635 -83639295 + (TA)n Simple_repeat Simple_repeat 2 39 0 5839 115 12 39 chrX 78960635 78961374 -83638556 - L1PB1 LINE L1 -368 5783 5082 385 0 0 0 chrX 78961397 78961439 -83638491 - L1P5 LINE L1 -591 5560 5519 * 6015 157 34 1 chrX 78961437 78962532 -83637398 - L1PBa LINE L1 -4416 2447 1317 4594 197 49 5 chrX 78962542 78963589 -83636341 - L1PBa LINE L1 -5706 1157 22 422 237 0 11 chrX 78963590 78963683 -83636247 + L2 LINE L2 3222 3313 0 577 181 71 8 chrX 78965660 78965787 -83634143 + L1MEd LINE L1 414 548 -5982 559 312 94 37 chrX 78966088 78967225 -83632705 + L1MEd LINE L1 911 2145 -4576 1220 138 9 56 chrX 78967268 78967499 -83632431 - L1MC1 LINE L1 0 6333 6114 257 272 50 38 chrX 78967782 78968040 -83631890 + L1MEd LINE L1 2451 2714 -3826 5254 142 61 17 chrX 78968057 78969156 -83630774 + L1MA8 LINE L1 4643 5830 -461 4014 87 7 116 chrX 78969156 78969896 -83630034 + MER4A LTR ERV1 5 663 -1 5254 142 61 17 chrX 78969896 78970371 -83629559 + L1MA8 LINE L1 5830 6283 -8 31 58 0 0 chrX 78970428 78970480 -83629450 + AT_rich Low_complexity Low_complexity 1 52 0 3721 134 49 0 chrX 78970593 78971242 -83628688 - Ricksha DNA DNA -71 3175 2495 1246 133 0 15 chrX 78971240 78971563 -83628367 - Ricksha DNA DNA -2835 411 1 * 326 296 8 8 chrX 78971565 78971690 -83628240 + L1MEd LINE L1 2789 2913 -3627 459 213 8 31 chrX 78972287 78972414 -83627516 - Ricksha DNA DNA -1107 147 24 889 285 109 51 chrX 78972441 78973978 -83625952 + L1MEd LINE L1 3734 5393 -1147 4189 206 33 117 chrX 78974168 78975884 -83624046 + L1 LINE L1 3210 4781 -1365 6285 129 24 14 chrX 78975908 78977054 -83622876 - L1MA1 LINE L1 -6 6296 5138 909 186 0 0 chrX 78977652 78977792 -83622138 + FRAM SINE Alu 9 148 -28 1297 168 58 7 chrX 78978132 78978285 -83621645 + L1MA9 LINE L1 5994 6138 -174 219 69 0 0 chrX 78978285 78978314 -83621616 + (CA)n Simple_repeat Simple_repeat 2 30 0 1297 168 58 7 chrX 78978314 78978452 -83621478 + L1MA9 LINE L1 6138 6300 -12 450 344 8 0 chrX 78978582 78978713 -83621217 + L2 LINE L2 3141 3272 0 342 347 60 0 chrX 78979037 78979187 -83620743 + MIR3 SINE MIR 42 200 -8 23 33 0 0 chrX 78979387 78979417 -83620513 + AT_rich Low_complexity Low_complexity 1 30 0 3741 144 14 5 chrX 78979522 78980175 -83619755 + L1MA5 LINE L1 5642 6300 0 668 263 97 53 chrX 78980181 78980756 -83619174 - L1MC/D LINE L1 -303 5818 5198 355 318 44 27 chrX 78980827 78981020 -83618910 - L1MC/D LINE L1 -1063 5083 4884 391 344 49 0 chrX 78981166 78981344 -83618586 - MIR SINE MIR -67 141 1 3860 32 9 0 chrX 78981833 78982297 -83617633 + L1PA5 LINE L1 5687 6154 0 2665 39 0 3 chrX 78982735 78983047 -83616883 - AluY SINE Alu 0 311 1 306 0 0 0 chrX 78984192 78984226 -83615704 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2057 147 16 13 chrX 78984343 78984717 -83615213 + THE1C LTR MaLR 1 375 0 7939 93 55 176 chrX 78984717 78986516 -83613414 + THE1C-int LTR MaLR 1 1580 0 1947 159 21 29 chrX 78986516 78986894 -83613036 + THE1C LTR MaLR 1 375 0 30 59 0 0 chrX 78987522 78987573 -83612357 + AT_rich Low_complexity Low_complexity 1 51 0 1388 91 0 0 chrX 78988368 78988554 -83611376 + L1PA7 LINE L1 5962 6147 -7 183 382 59 0 chrX 78989138 78989206 -83610724 + L2 LINE L2 3115 3186 -86 683 263 83 10 chrX 78989619 78989824 -83610106 - MIR SINE MIR -20 242 23 6284 156 13 5 chrX 78990059 78990733 -83609197 - L1MA1 LINE L1 0 7721 7054 2469 47 7 3 chrX 78990733 78991033 -83608897 + AluY SINE Alu 1 301 -10 6284 156 13 5 chrX 78991033 78992116 -83607814 - L1MA1 LINE L1 -667 7054 5950 1275 67 12 0 chrX 78992134 78992299 -83607631 - L1PA3 LINE L1 -3 6152 5986 5944 30 1 0 chrX 78992306 78993018 -83606912 + L1PA3 LINE L1 5279 5991 -164 3874 192 37 1 chrX 78993011 78993849 -83606081 - L1MA1 LINE L1 -1601 5964 5097 * 9153 208 37 63 chrX 78993849 78994124 -83605806 - L1MA1 LINE L1 -4252 3313 3032 1966 94 3 67 chrX 78994124 78994471 -83605459 - AluSc SINE Alu 0 328 1 9153 208 37 63 chrX 78994471 78994907 -83605023 - L1MA1 LINE L1 -4533 3032 2586 2173 126 27 21 chrX 78994907 78995280 -83604650 - THE1C LTR MaLR 0 375 1 9153 208 37 63 chrX 78995280 78995296 -83604634 - L1MA1 LINE L1 -4979 2586 2571 2343 95 0 0 chrX 78995296 78995592 -83604338 - AluSc SINE Alu -13 296 1 9153 208 37 63 chrX 78995592 78997881 -83602049 - L1MA1 LINE L1 -4994 2571 13 728 264 21 5 chrX 78997882 78998075 -83601855 - L2 LINE L2 -963 2351 2156 189 343 27 0 chrX 78999296 78999369 -83600561 - MIR SINE MIR -187 75 1 34169 62 1 1 chrX 78999644 79005790 -83594140 + L1PA5 LINE L1 13 6154 0 301 273 47 31 chrX 79005847 79005975 -83593955 - L1MC4 LINE L1 -966 7076 6947 216 111 0 0 chrX 79006017 79006053 -83593877 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1108 188 29 0 chrX 79006064 79006303 -83593627 + L1MB1 LINE L1 5912 6157 -11 237 224 0 0 chrX 79007010 79007059 -83592871 + L2 LINE L2 3261 3309 -4 187 410 17 0 chrX 79007227 79007344 -83592586 + L2 LINE L2 2945 3063 -209 259 245 115 94 chrX 79007477 79007626 -83592304 + MIR SINE MIR 88 247 -15 206 268 0 18 chrX 79007659 79007715 -83592215 + L2 LINE L2 3213 3267 -5 240 86 0 0 chrX 79008211 79008246 -83591684 + (CA)n Simple_repeat Simple_repeat 2 36 0 243 352 56 8 chrX 79008569 79008694 -83591236 - MIR SINE MIR -79 183 53 214 312 98 47 chrX 79008780 79009014 -83590916 + L2 LINE L2 2313 2558 -756 24 0 0 0 chrX 79009371 79009395 -83590535 + AT_rich Low_complexity Low_complexity 1 24 0 206 316 79 13 chrX 79009426 79009502 -83590428 - L2 LINE L2 -43 3229 3149 626 306 33 6 chrX 79009545 79009728 -83590202 + MER5A DNA MER1_type 1 188 -1 1972 134 45 6 chrX 79009892 79010251 -83589679 + L1MA5 LINE L1 5923 6295 -5 628 330 15 15 chrX 79011120 79011323 -83588607 - MIR3 SINE MIR -3 205 3 936 90 0 0 chrX 79012559 79012693 -83587237 - L1MA3 LINE L1 0 6305 6172 204 163 0 0 chrX 79013795 79013838 -83586092 + CT-rich Low_complexity Low_complexity 1 43 0 7301 152 122 16 chrX 79013843 79014958 -83584972 + Tigger1 DNA MER2_type 29 1327 -1091 225 0 0 0 chrX 79014958 79014983 -83584947 + (CA)n Simple_repeat Simple_repeat 2 26 0 7301 152 122 16 chrX 79014983 79015279 -83584651 + Tigger1 DNA MER2_type 1327 1590 -828 30154 108 6 28 chrX 79015280 79021792 -83578138 + L1PA7 LINE L1 1 6461 -8 4690 170 10 1 chrX 79021792 79022627 -83577303 + Tigger1 DNA MER2_type 1577 2418 0 3052 207 12 18 chrX 79022653 79023037 -83576893 - L1M3 LINE L1 -535 5633 5248 2413 124 8 3 chrX 79023037 79023399 -83576531 + THE1B LTR MaLR 1 364 0 10194 127 14 29 chrX 79023399 79025004 -83574926 + THE1B-int LTR MaLR 1 1580 0 2353 127 11 3 chrX 79025004 79025365 -83574565 + THE1B LTR MaLR 1 364 0 3052 207 12 18 chrX 79025365 79025973 -83573957 - L1M3 LINE L1 -917 5251 4644 3491 177 51 1 chrX 79025989 79026657 -83573273 - L1PA16 LINE L1 -1 6165 5465 2027 215 19 26 chrX 79026691 79027152 -83572778 - MLT1C LTR MaLR -9 458 1 435 286 124 28 chrX 79027165 79027343 -83572587 - MIR SINE MIR -10 252 58 456 295 82 82 chrX 79028500 79028957 -83570973 - MLT1L LTR MaLR -94 521 1 237 283 0 0 chrX 79028988 79029041 -83570889 + GA-rich Low_complexity Low_complexity 1 53 0 244 270 162 0 chrX 79029177 79029251 -83570679 - MIR SINE MIR -19 243 158 21 0 0 0 chrX 79029680 79029701 -83570229 + AT_rich Low_complexity Low_complexity 1 21 0 1472 238 36 84 chrX 79030624 79031267 -83568663 - LTR9 LTR ERV1 0 612 1 9109 219 116 39 chrX 79031868 79035402 -83564528 + L1PA14 LINE L1 2346 6188 -1396 22738 173 32 30 chrX 79035402 79038748 -83561182 + L1PA10 LINE L1 2 3342 -3528 369 0 0 0 chrX 79038748 79038789 -83561141 + (CA)n Simple_repeat Simple_repeat 2 42 0 22738 173 32 30 chrX 79038789 79041795 -83558135 + L1PA10 LINE L1 3342 6866 -4 5034 149 14 14 chrX 79041798 79043216 -83556714 + L1PA14 LINE L1 6177 7595 -4 2475 241 35 27 chrX 79043220 79044034 -83555896 + L1M4 LINE L1 4174 4997 -1149 7108 52 1 1 chrX 79044034 79044925 -83555005 + L1PA7 LINE L1 5259 6149 -5 2475 241 35 27 chrX 79044925 79045023 -83554907 + L1M4 LINE L1 4997 5093 -1053 11701 198 23 12 chrX 79045028 79048393 -83551537 - L1MA2 LINE L1 0 7723 4307 10391 30 0 0 chrX 79048393 79050395 -83549535 - L1PA3 LINE L1 -1 6154 4154 11701 198 23 12 chrX 79050395 79050885 -83549045 - L1MA2 LINE L1 -3416 4307 3824 1077 171 18 9 chrX 79050857 79051079 -83548851 - L1MA2 LINE L1 -4821 2744 2521 * 5235 253 18 1 chrX 79051081 79052501 -83547429 - L1 LINE L1 -821 5325 3882 2449 191 10 8 chrX 79052501 79052992 -83546938 + L1PA16 LINE L1 5665 6156 -10 5565 134 27 1 chrX 79053467 79054471 -83545459 + L1PB1 LINE L1 5118 6148 -3 504 302 83 18 chrX 79054624 79054962 -83544968 + L1MEc LINE L1 2051 2410 -3986 218 152 0 22 chrX 79054992 79055038 -83544892 + (TA)n Simple_repeat Simple_repeat 2 46 0 437 286 61 34 chrX 79055069 79055396 -83544534 + L1MEc LINE L1 2966 3309 -2906 2122 125 0 0 chrX 79055396 79055714 -83544216 + AluSq SINE Alu 1 318 0 437 286 61 34 chrX 79055714 79055797 -83544133 + L1MEc LINE L1 3309 3388 -2827 392 253 11 11 chrX 79055954 79056045 -83543885 + MER5A DNA MER1_type 14 104 -85 413 314 24 35 chrX 79056063 79056232 -83543698 + LTR16B LTR ERVL 10 176 -288 364 330 21 16 chrX 79056276 79056464 -83543466 + L1MEc LINE L1 3538 3726 -2489 399 315 22 44 chrX 79056464 79056645 -83543285 - LTR16B LTR ERVL -285 179 3 446 265 74 49 chrX 79057941 79058103 -83541827 - MIR3 SINE MIR -26 182 17 30 0 0 0 chrX 79059277 79059307 -83540623 + AT_rich Low_complexity Low_complexity 1 30 0 207 316 71 71 chrX 79060457 79060548 -83539382 - MER5A DNA MER1_type 0 189 96 387 293 17 50 chrX 79060548 79060729 -83539201 - MER5B DNA MER1_type 0 178 4 207 316 71 71 chrX 79060729 79060792 -83539138 - MER5A DNA MER1_type -92 97 35 191 333 83 46 chrX 79062924 79063032 -83536898 - MER5A DNA MER1_type -24 165 54 22 35 0 0 chrX 79063221 79063250 -83536680 + AT_rich Low_complexity Low_complexity 1 29 0 2006 21 0 0 chrX 79063665 79063901 -83536029 + L1PA4 LINE L1 5912 6147 -8 3077 200 12 2 chrX 79063915 79064510 -83535420 - L1MB5 LINE L1 -23 6151 5551 4716 195 60 20 chrX 79064520 79066057 -83533873 - L1MC2 LINE L1 -10 6832 5232 238 255 0 0 chrX 79066086 79066137 -83533793 - L1PA12 LINE L1 -5349 2232 2182 332 313 0 0 chrX 79066371 79066467 -83533463 - L1PA12 LINE L1 -5402 2179 2084 750 386 29 20 chrX 79066571 79067123 -83532807 - L1PA12 LINE L1 -6229 1345 789 797 201 4 78 chrX 79067127 79067371 -83532559 - L1MC2 LINE L1 -3374 3270 3045 1219 220 61 0 chrX 79067381 79067488 -83532442 + AluJb SINE Alu 13 112 -200 195 69 0 0 chrX 79067488 79067517 -83532413 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1219 220 61 0 chrX 79067517 79067673 -83532257 + AluJb SINE Alu 112 292 -20 636 282 12 8 chrX 79067678 79067926 -83532004 - L1MC2 LINE L1 -3593 3051 2803 463 196 62 9 chrX 79067920 79068032 -83531898 - L1MC2 LINE L1 -7 6337 6220 * 12853 222 30 14 chrX 79068042 79072403 -83527527 - L1PB2 LINE L1 0 6151 1733 744 256 93 84 chrX 79072395 79072526 -83527404 - L1MC2 LINE L1 -5371 1171 1043 * 1145 243 16 36 chrX 79072526 79072831 -83527099 + AluJo SINE Alu 3 301 -1 744 256 93 84 chrX 79072831 79073258 -83526672 - L1MC2 LINE L1 -5499 1043 608 283 241 0 0 chrX 79073440 79073498 -83526432 - LTR40a LTR ERVL -461 58 1 297 293 33 85 chrX 79073732 79073857 -83526073 + L1MEd LINE L1 1018 1148 -1342 2312 96 3 0 chrX 79073857 79074160 -83525770 + AluSg SINE Alu 1 304 -6 297 293 33 85 chrX 79074160 79074512 -83525418 + L1MEd LINE L1 1148 1571 -919 1998 121 73 17 chrX 79074530 79074885 -83525045 - THE1C LTR MaLR 0 375 1 278 285 42 42 chrX 79075015 79075159 -83524771 + L1MEc LINE L1 59 202 -6194 1759 128 15 70 chrX 79075355 79075683 -83524247 - AluSx SINE Alu -2 310 1 501 275 52 13 chrX 79075985 79076692 -83523238 + L1MEc LINE L1 692 1559 -4837 235 200 0 0 chrX 79076754 79076789 -83523141 - MER81 DNA DNA -79 35 1 376 258 112 25 chrX 79076884 79077172 -83522758 + L1 LINE L1 1537 1940 -4456 325 217 0 0 chrX 79077278 79077347 -83522583 - Charlie1b DNA MER1_type -9 514 446 321 206 0 0 chrX 79077350 79077423 -83522507 + L1 LINE L1 5681 5753 -1812 1118 159 0 26 chrX 79077428 79077623 -83522307 - AluJo SINE Alu -36 276 87 881 233 12 8 chrX 79077623 79077868 -83522062 + L1 LINE L1 5736 5981 -1584 6280 151 61 7 chrX 79077878 79078978 -83520952 + L1PB1 LINE L1 1 1159 -5704 13183 208 26 10 chrX 79078982 79079848 -83520082 + L1PB1 LINE L1 1292 2142 -4725 1921 163 10 3 chrX 79079848 79080154 -83519776 + AluSx SINE Alu 3 310 -2 13183 208 26 10 chrX 79080154 79081157 -83518773 + L1PB1 LINE L1 2142 3127 -3740 2044 150 55 3 chrX 79081157 79081503 -83518427 - THE1B LTR MaLR 0 364 1 13183 208 26 10 chrX 79081503 79082646 -83517284 + L1PB1 LINE L1 3127 4250 -2617 186 43 0 0 chrX 79082646 79082669 -83517261 + (CAA)n Simple_repeat Simple_repeat 2 24 0 13183 208 26 10 chrX 79082669 79085035 -83514895 + L1PB1 LINE L1 4250 6805 -62 808 120 0 0 chrX 79085035 79085168 -83514762 + L1PB1 LINE L1 6029 6165 0 5453 133 8 22 chrX 79085185 79085733 -83514197 + L1PA16 LINE L1 4549 5103 -1063 1842 184 35 19 chrX 79085733 79086102 -83513828 + THE1C LTR MaLR 1 375 0 5453 133 8 22 chrX 79086102 79086342 -83513588 + L1PA16 LINE L1 5103 5345 -821 1557 201 17 0 chrX 79086342 79086635 -83513295 + AluSx SINE Alu 2 299 -13 5453 133 8 22 chrX 79086635 79087473 -83512457 + L1PA16 LINE L1 5345 6165 -1 1426 226 88 16 chrX 79087476 79087906 -83512024 - Charlie1b DNA MER1_type -62 461 1 360 268 70 17 chrX 79087980 79088227 -83511703 + L1MCa LINE L1 2326 2587 -3839 876 269 47 4 chrX 79088244 79088523 -83511407 + L1ME3 LINE L1 5840 6130 -32 21 57 0 0 chrX 79088528 79088563 -83511367 + AT_rich Low_complexity Low_complexity 1 35 0 251 224 52 30 chrX 79088897 79089031 -83510899 + L1MEc LINE L1 2172 2308 -4088 225 312 65 0 chrX 79091389 79091466 -83508464 - L3 LINE CR1 -1 1576 1495 515 305 82 17 chrX 79091467 79091700 -83508230 - MIR SINE MIR -11 251 4 650 301 175 36 chrX 79091714 79092182 -83507748 - L3 LINE CR1 -115 1462 930 273 260 26 0 chrX 79092196 79092273 -83507657 - MIR SINE MIR 0 262 184 1030 277 105 58 chrX 79092410 79092934 -83506996 - L2 LINE L2 0 3313 2761 2224 209 94 64 chrX 79093193 79094149 -83505781 - L1ME2 LINE L1 -13 6151 5173 13400 184 29 8 chrX 79094150 79097455 -83502475 - L1MA1 LINE L1 0 7721 4486 2266 88 0 0 chrX 79097455 79097761 -83502169 - AluSx SINE Alu 0 306 1 13400 184 29 8 chrX 79097761 79098684 -83501246 - L1MA1 LINE L1 -3235 4486 3584 330 26 0 0 chrX 79098684 79098723 -83501207 + (TG)n Simple_repeat Simple_repeat 2 40 0 13400 184 29 8 chrX 79098723 79100811 -83499119 - L1MA1 LINE L1 -4137 3584 1270 349 152 0 15 chrX 79100803 79100869 -83499061 - L1P LINE L1 -2535 3611 3547 * 8569 106 26 39 chrX 79100869 79102612 -83497318 - MER61C-int LTR ERV1 -2441 2776 960 3699 164 66 53 chrX 79102613 79103442 -83496488 - MER61C-int LTR ERV1 -4376 841 2 935 236 104 29 chrX 79103448 79103718 -83496212 - MER61C LTR ERV1 -30 404 18 5934 117 13 3 chrX 79103728 79105034 -83494896 + L1PA11 LINE L1 4839 6170 -4 885 272 92 4 chrX 79105969 79106208 -83493722 - MIR SINE MIR 0 262 3 660 251 0 6 chrX 79107182 79107349 -83492581 - L1MB7 LINE L1 -9 6175 6010 1857 200 45 5 chrX 79107364 79107764 -83492166 + L1PB4 LINE L1 5740 6155 -1 2620 216 52 23 chrX 79107765 79109005 -83490925 - L1MB7 LINE L1 -278 5906 4645 4647 190 63 4 chrX 79109019 79110824 -83489106 - L1MA6 LINE L1 0 6300 4387 677 141 141 0 chrX 79110853 79110865 -83489065 - L1MA10 LINE L1 -5 6329 6318 533 245 318 4 chrX 79110865 79111126 -83488804 - L1ME2 LINE L1 -9 6155 5813 18541 183 20 19 chrX 79111296 79112771 -83487159 + L1MA2 LINE L1 16 1489 -6234 4607 28 0 4 chrX 79112771 79113314 -83486616 - L1PA3 LINE L1 0 6155 5615 18541 183 20 19 chrX 79113314 79119377 -83480553 + L1MA2 LINE L1 1489 7569 -154 1027 119 0 88 chrX 79119428 79119622 -83480308 + L1MA2 LINE L1 7545 7721 -2 7807 228 31 86 chrX 79119830 79120202 -83479728 - L1 LINE L1 -1763 5404 5013 441 0 0 0 chrX 79120202 79120251 -83479679 + (TG)n Simple_repeat Simple_repeat 2 50 0 7807 228 31 86 chrX 79120251 79125839 -83474091 - L1 LINE L1 -2154 5013 3 303 259 86 37 chrX 79125840 79126002 -83473928 - L1M4 LINE L1 -1520 4626 4457 180 0 0 0 chrX 79126002 79126022 -83473908 + (T)n Simple_repeat Simple_repeat 1 20 0 2043 107 0 37 chrX 79126032 79126330 -83473600 + AluSg SINE Alu 11 297 -13 747 164 50 0 chrX 79126404 79126563 -83473367 - L1MA7 LINE L1 0 6291 6125 919 176 0 27 chrX 79126567 79126755 -83473175 + L1MA7 LINE L1 5946 6128 -163 303 93 0 0 chrX 79127035 79127078 -83472852 + (TA)n Simple_repeat Simple_repeat 2 44 0 276 210 89 57 chrX 79127172 79127329 -83472601 - L1M LINE L1 -878 5419 5258 300 305 62 22 chrX 79127339 79127786 -83472144 - L1MEc LINE L1 -2971 3244 2728 260 234 96 48 chrX 79128078 79128245 -83471685 - L1MEc LINE L1 -3992 2404 2230 2959 112 0 0 chrX 79128342 79128769 -83471161 + L1P5 LINE L1 5333 5759 -392 228 222 0 0 chrX 79128770 79128833 -83471097 - LTR66 LTR ERVL -153 457 395 183 156 0 0 chrX 79128872 79128904 -83471026 + (TA)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chrX 79128981 79129011 -83470919 + AT_rich Low_complexity Low_complexity 1 30 0 983 197 0 165 chrX 79129115 79129394 -83470536 - MER8 DNA MER2_type 0 239 7 24 0 0 0 chrX 79131891 79131915 -83468015 + AT_rich Low_complexity Low_complexity 1 24 0 2201 129 116 10 chrX 79131940 79132327 -83467603 + MSTA LTR MaLR 1 428 0 1067 284 94 7 chrX 79132616 79133442 -83466488 - L1ME LINE L1 -537 5625 4729 1807 243 56 49 chrX 79133550 79134102 -83465828 + MER68 LTR ERV1 1 556 -6 211 337 12 24 chrX 79134318 79134401 -83465529 + L3 LINE CR1 1488 1569 -8 300 111 0 0 chrX 79134975 79135020 -83464910 + (CA)n Simple_repeat Simple_repeat 1 45 0 8088 73 2 2 chrX 79135761 79137625 -83462305 - L1PA6 LINE L1 -1 6153 4289 2499 167 7 11 chrX 79137879 79138316 -83461614 - L1MA8 LINE L1 -194 6097 5663 739 161 84 0 chrX 79138316 79138467 -83461463 + L1MA8 LINE L1 6118 6285 -6 858 182 23 11 chrX 79139088 79139264 -83460666 - MER101B LTR ERV1 -392 178 1 4186 155 102 36 chrX 79139695 79140561 -83459369 - MER49 LTR ERV1 0 923 1 828 130 7 0 chrX 79141004 79141142 -83458788 - L1PB1 LINE L1 -1 6150 6012 1146 133 17 0 chrX 79141326 79141506 -83458424 - L1PB1 LINE L1 -17 6134 5952 204 40 0 0 chrX 79141809 79141834 -83458096 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1475 60 0 0 chrX 79141834 79142019 -83457911 - HERVL-A2 LTR ERVL -5305 349 165 455 108 0 0 chrX 79142017 79142082 -83457848 + HERVL LTR ERVL 99 163 -5491 * 398 61 0 0 chrX 79142093 79142142 -83457788 + HERVL LTR ERVL 70 118 -5536 * 1073 70 57 32 chrX 79142132 79142289 -83457641 - HERVL-A2 LTR ERVL -5493 161 1 2295 121 3 0 chrX 79142289 79142619 -83457311 - MLT2A2 LTR ERVL 0 453 123 21 57 0 0 chrX 79143150 79143185 -83456745 + AT_rich Low_complexity Low_complexity 1 35 0 1121 141 11 0 chrX 79143186 79143371 -83456559 - L1PB1 LINE L1 -6 6145 5959 5966 60 20 11 chrX 79143373 79143722 -83456208 - L1PA8 LINE L1 0 6172 5828 2336 56 7 7 chrX 79143722 79144024 -83455906 - AluY SINE Alu -9 302 1 5966 60 20 11 chrX 79144024 79144461 -83455469 - L1PA8 LINE L1 -344 5828 5379 16964 39 2 14 chrX 79144461 79147328 -83452602 + L1PA4 LINE L1 3293 6147 -8 419 232 15 67 chrX 79147568 79147882 -83452048 - MER67D LTR ERV1 -14 529 273 2188 178 10 2 chrX 79147883 79148281 -83451649 - MER57A LTR ERV1 0 403 3 1336 149 18 0 chrX 79148288 79148516 -83451414 - MER57A-int LTR ERV1 -19 7518 7287 679 145 23 30 chrX 79148516 79148647 -83451283 - LTR54B LTR ERV1 -363 135 6 5188 178 26 12 chrX 79148647 79149614 -83450316 - MER57A-int LTR ERV1 -388 7149 6170 444 174 20 0 chrX 79149614 79149712 -83450218 - MER113 DNA MER1_type? -298 223 124 1820 199 3 22 chrX 79149724 79150086 -83449844 - MER57A-int LTR ERV1 -1358 6179 5825 741 138 17 0 chrX 79150468 79150584 -83449346 - AluSg/x SINE Alu -16 296 179 3514 151 1 15 chrX 79150585 79151236 -83448694 - MER57A-int LTR ERV1 -1747 5790 5149 2700 318 42 19 chrX 79151249 79152340 -83447590 - MER4B-int LTR ERV1 -3922 3283 2168 401 280 18 12 chrX 79152471 79152639 -83447291 - MER4B-int LTR ERV1 -5216 1875 1707 651 251 49 29 chrX 79153498 79153741 -83446189 - MER4B-int LTR ERV1 -6849 356 109 3330 116 10 21 chrX 79153787 79154402 -83445528 - MER4B LTR ERV1 -4 775 2 1064 173 8 111 chrX 79154504 79154857 -83445073 - TAR1 Satellite telomeric -1791 320 4 * 1417 170 14 112 chrX 79154684 79155113 -83444817 - LTR60 LTR ERV1 -37 549 163 415 211 0 70 chrX 79155606 79155720 -83444210 - LTR60 LTR ERV1 -480 106 1 659 211 22 79 chrX 79156989 79157216 -83442714 - MER58C DNA MER1_type 0 215 2 207 0 0 0 chrX 79157893 79157916 -83442014 + (CA)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chrX 79158271 79158297 -83441633 + AT_rich Low_complexity Low_complexity 1 26 0 5321 128 10 25 chrX 79158905 79160489 -83439441 - L1PA15 LINE L1 -8 6157 4615 23 0 0 0 chrX 79163398 79163421 -83436509 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chrX 79163957 79163994 -83435936 + AT_rich Low_complexity Low_complexity 1 37 0 6470 187 64 46 chrX 79164257 79166377 -83433553 - L1 LINE L1 -2002 5563 3413 414 0 0 0 chrX 79166391 79166437 -83433493 + (TG)n Simple_repeat Simple_repeat 2 47 0 13071 192 40 14 chrX 79166437 79167501 -83432429 - L1 LINE L1 -4711 2854 1819 384 22 0 0 chrX 79167501 79167546 -83432384 + (TC)n Simple_repeat Simple_repeat 2 46 0 13071 192 40 14 chrX 79167546 79169238 -83430692 - L1 LINE L1 -5746 1819 23 11373 208 59 10 chrX 79169240 79170255 -83429675 - L1P4 LINE L1 -725 6144 5181 209 29 0 57 chrX 79170255 79170290 -83429640 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1960 135 3 3 chrX 79170292 79170580 -83429350 - AluSx SINE Alu -23 289 2 11373 208 59 10 chrX 79170580 79174694 -83425236 - L1P4 LINE L1 -1688 5181 740 1022 154 0 36 chrX 79174698 79174839 -83425091 - L1P4 LINE L1 -6646 203 69 3941 80 20 7 chrX 79174839 79175386 -83424544 - MER41A LTR ERV1 0 554 1 1022 154 0 36 chrX 79175386 79175439 -83424491 - L1P4 LINE L1 -6780 69 16 5074 247 55 3 chrX 79175455 79176387 -83423543 - L1MEc LINE L1 -1649 5308 4426 1910 163 0 13 chrX 79176387 79176693 -83423237 - AluJb SINE Alu -10 302 1 5074 247 55 3 chrX 79176693 79177541 -83422389 - L1MEc LINE L1 -2531 4426 3436 1004 278 58 24 chrX 79177614 79178388 -83421542 - L1MEc LINE L1 -3633 3324 2565 672 202 29 87 chrX 79178419 79178627 -83421303 - MLT1A1 LTR MaLR -169 196 1 1664 281 40 12 chrX 79178627 79179126 -83420804 - L1MEc LINE L1 -6067 792 280 2110 166 16 52 chrX 79179129 79179700 -83420230 + MER61D LTR ERV1 1 1232 -15 818 215 82 5 chrX 79179734 79179953 -83419977 - L1MEc LINE L1 -6611 248 13 1373 205 11 4 chrX 79179970 79180238 -83419692 - MER68 LTR ERV1 -292 270 1 4975 167 82 32 chrX 79180252 79181453 -83418477 - HERVL68 LTR ERVL -19 3018 1758 3141 90 7 2 chrX 79181453 79181876 -83418054 + MER61B LTR ERV1 1 425 0 549 153 9 36 chrX 79181876 79181987 -83417943 + MER61B-int LTR ERV1 1 108 -5109 2703 93 12 52 chrX 79182119 79182601 -83417329 + MER61B-int LTR ERV1 340 802 -4415 2484 110 101 22 chrX 79182601 79183055 -83416875 + LTR21A LTR ERV1 1 490 -15 17099 62 5 1 chrX 79183055 79185332 -83414598 + HERVFH21 LTR ERV1 5 2291 -4238 * 23232 101 6 1 chrX 79185329 79188768 -83411162 + HERVFH21 LTR ERV1 3074 6529 0 2367 112 109 22 chrX 79188768 79189225 -83410705 + LTR21A LTR ERV1 1 497 -8 2571 86 4 66 chrX 79189225 79189576 -83410354 + MER61B-int LTR ERV1 818 1189 -3691 2177 101 3 0 chrX 79189576 79189863 -83410067 - AluSc SINE Alu -21 288 1 2571 86 4 66 chrX 79189863 79189962 -83409968 + MER61B-int LTR ERV1 1189 2139 -2741 * 6218 78 13 22 chrX 79189957 79190943 -83408987 + MER61B-int LTR ERV1 1361 2337 -2880 6149 131 38 12 chrX 79190934 79191970 -83407960 + MER61B-int LTR ERV1 4155 5217 0 * 3047 111 7 5 chrX 79191970 79192394 -83407536 + MER61B LTR ERV1 1 425 0 2336 206 32 24 chrX 79192394 79192929 -83407001 - HERVL68 LTR ERVL -1276 1761 1223 497 80 13 13 chrX 79192934 79193009 -83406921 - MER68 LTR ERV1 -475 87 13 931 104 7 0 chrX 79193010 79193145 -83406785 - L1P3 LINE L1 -6325 136 1 2782 277 58 38 chrX 79193145 79193242 -83406688 - L2 LINE L2 -288 3025 2931 3056 160 38 61 chrX 79193242 79193949 -83405981 + LTR8 LTR ERV1 1 691 0 2782 277 58 38 chrX 79193949 79194612 -83405318 - L2 LINE L2 -382 2931 2188 284 83 21 0 chrX 79194612 79194660 -83405270 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2782 277 58 38 chrX 79194660 79195026 -83404904 - L2 LINE L2 -1125 2188 1831 1489 220 139 44 chrX 79195652 79196170 -83403760 - MLT1F1 LTR MaLR 0 567 1 1552 240 163 16 chrX 79196259 79197025 -83402905 + L1M4 LINE L1 2622 3500 -2646 * 1744 283 63 10 chrX 79197001 79197814 -83402116 + L1M4 LINE L1 3850 4705 -1441 1782 170 3 3 chrX 79197817 79198105 -83401825 + AluJo SINE Alu 1 288 -24 4096 185 23 8 chrX 79198109 79199060 -83400870 - L1MC1 LINE L1 -62 6271 5186 248 272 22 0 chrX 79199066 79199158 -83400772 + L1M4 LINE L1 4855 4948 -1198 184 259 0 21 chrX 79199954 79200097 -83399833 + GA-rich Low_complexity Low_complexity 1 140 0 27 62 0 0 chrX 79201851 79201899 -83398031 + AT_rich Low_complexity Low_complexity 1 48 0 368 175 0 12 chrX 79201899 79201979 -83397951 + L1M4 LINE L1 5015 5093 -1053 3251 124 28 15 chrX 79202023 79202564 -83397366 - L1PB2 LINE L1 -2 6149 5602 1374 206 9 6 chrX 79202565 79202881 -83397049 - L1 LINE L1 -1747 4399 4083 547 31 0 0 chrX 79205893 79205957 -83393973 + HERV17 LTR ERV1 8563 8626 0 2688 46 3 0 chrX 79205957 79206280 -83393650 + LTR17 LTR ERV1 1 324 -456 13172 199 16 8 chrX 79207638 79211334 -83388596 - L1PA13 LINE L1 0 6163 2452 23 0 0 0 chrX 79211957 79211980 -83387950 + AT_rich Low_complexity Low_complexity 1 23 0 257 330 87 64 chrX 79215290 79215463 -83384467 - MIR3 SINE MIR -12 196 20 384 317 144 0 chrX 79215613 79215815 -83384115 - MIR SINE MIR -7 255 25 2057 117 13 7 chrX 79215988 79216295 -83383635 + AluSc SINE Alu 1 309 0 1693 175 10 0 chrX 79216786 79217078 -83382852 - AluSx SINE Alu -17 295 1 1382 12 6 0 chrX 79217801 79217962 -83381968 - L1HS LINE L1 0 6155 5994 21 0 0 0 chrX 79218007 79218028 -83381902 + AT_rich Low_complexity Low_complexity 1 21 0 305 289 173 0 chrX 79218105 79218209 -83381721 + MIR3 SINE MIR 87 208 0 1241 180 11 4 chrX 79218826 79219087 -83380843 + L1MA4 LINE L1 6031 6293 -7 494 275 228 9 chrX 79219820 79220031 -83379899 + MIR SINE MIR 2 258 -4 24 32 0 0 chrX 79220134 79220165 -83379765 + AT_rich Low_complexity Low_complexity 1 31 0 215 324 9 74 chrX 79220486 79220594 -83379336 + L2 LINE L2 3108 3208 -64 1763 148 50 0 chrX 79222046 79222329 -83377601 + AluSx SINE Alu 1 297 -15 3299 37 0 2 chrX 79222564 79222967 -83376963 - L1PA5 LINE L1 0 6154 5753 195 186 80 88 chrX 79223228 79223341 -83376589 - L2 LINE L2 -1368 1946 1835 3791 130 90 70 chrX 79223638 79224237 -83375693 - LTR1 LTR ERV1 0 785 166 2014 152 0 3 chrX 79224237 79224534 -83375396 - AluSg SINE Alu -14 296 1 3791 130 90 70 chrX 79224534 79224704 -83375226 - LTR1 LTR ERV1 -619 166 1 1756 180 58 22 chrX 79225506 79225868 -83374062 - THE1C LTR MaLR 0 375 1 299 342 33 0 chrX 79226381 79226501 -83373429 - MIR SINE MIR -73 189 66 373 261 65 43 chrX 79226643 79226827 -83373103 - MER5A DNA MER1_type 0 189 2 21 71 0 0 chrX 79227172 79227214 -83372716 + AT_rich Low_complexity Low_complexity 1 42 0 329 161 27 154 chrX 79227718 79227867 -83372063 + L1MDa LINE L1 2417 2546 -3994 430 262 21 69 chrX 79228112 79228257 -83371673 - L2 LINE L2 -221 3092 2955 2679 104 52 2 chrX 79228561 79228983 -83370947 + L1PB2 LINE L1 5709 6151 0 192 278 42 14 chrX 79228983 79229055 -83370875 - MIR3 SINE MIR -16 192 119 22 56 0 0 chrX 79229085 79229121 -83370809 + AT_rich Low_complexity Low_complexity 1 36 0 8998 192 57 3 chrX 79229606 79232632 -83367298 - L1PB3 LINE L1 -3 6151 2959 923 293 8 16 chrX 79232758 79233011 -83366919 + MIR SINE MIR 2 252 -10 489 358 24 21 chrX 79233146 79233526 -83366404 + L1MEc LINE L1 202 582 -5981 550 303 82 46 chrX 79233608 79234196 -83365734 + L1MEc LINE L1 897 1505 -4879 446 216 257 20 chrX 79234201 79234349 -83365581 - MER58C DNA MER1_type -32 183 1 359 248 50 30 chrX 79234349 79234505 -83365425 + L1MEc LINE L1 1499 1806 -4731 12639 197 26 3 chrX 79234513 79236736 -83363194 + L1PA13 LINE L1 1 2273 -4514 * 16900 175 14 7 chrX 79236726 79240959 -83358971 + L1PA13 LINE L1 2557 6813 -1 25 0 0 0 chrX 79241655 79241680 -83358250 + AT_rich Low_complexity Low_complexity 1 25 0 492 261 78 7 chrX 79242178 79242320 -83357610 - L1MC4 LINE L1 -111 7931 7780 3822 268 74 25 chrX 79242363 79243951 -83355979 - L1MC4a LINE L1 -180 7628 6119 2669 149 35 0 chrX 79243951 79244433 -83355497 - L1MA4 LINE L1 -1 6299 5801 3822 268 74 25 chrX 79244433 79245596 -83354334 - L1MC4a LINE L1 -1689 6119 4725 1908 162 118 21 chrX 79245596 79245985 -83353945 + MSTA LTR MaLR 1 427 -1 3822 268 74 25 chrX 79245985 79246181 -83353749 - L1MC4a LINE L1 -3083 4725 4540 5226 119 4 0 chrX 79247292 79248066 -83351864 - L1PA14 LINE L1 0 6161 5385 2429 30 7 1 chrX 79248077 79248089 -83351841 - L1PA14 LINE L1 -840 5306 5296 2051 33 0 0 chrX 79248089 79248330 -83351600 - L1PA3 LINE L1 0 6155 5915 2429 30 7 1 chrX 79248330 79248638 -83351292 - L1PA14 LINE L1 -850 5296 4990 * 4758 189 11 0 chrX 79248635 79249573 -83350357 - L1P LINE L1 -743 5403 4456 5908 192 6 4 chrX 79249580 79250747 -83349183 + L1P LINE L1 3291 4459 -1687 23 65 0 16 chrX 79250850 79250898 -83349032 + AT_rich Low_complexity Low_complexity 1 49 -12 6098 101 1 3 chrX 79250898 79251939 -83347991 + L1PA8A LINE L1 5080 6118 -13 23 65 0 16 chrX 79251939 79251952 -83347978 + AT_rich Low_complexity Low_complexity 49 61 0 511 207 153 9 chrX 79252312 79252423 -83347507 - LTR29 LTR ERV1 -1 621 495 2211 138 3 0 chrX 79252423 79252757 -83347173 + L1PA13 LINE L1 5799 6133 -30 2777 112 2 5 chrX 79252757 79253151 -83346779 - MER41A LTR ERV1 0 554 162 18740 100 6 1 chrX 79253153 79256643 -83343287 - L1PA7 LINE L1 0 6469 2958 3687 131 31 2 chrX 79256644 79257195 -83342735 - L1PA7 LINE L1 -5884 577 11 1103 134 6 0 chrX 79257206 79257377 -83342553 - MER41A LTR ERV1 -380 174 3 13264 147 37 35 chrX 79257377 79258848 -83341082 - MER41A-int LTR ERV1 0 5946 4480 2341 85 0 3 chrX 79258848 79259141 -83340789 + AluSq SINE Alu 1 292 -21 13264 147 37 35 chrX 79259141 79260918 -83339012 - MER41A-int LTR ERV1 -1466 4480 1431 14521 27 1 0 chrX 79260918 79263400 -83336530 + L1PA3 LINE L1 3670 6152 -3 13264 147 37 35 chrX 79263400 79263780 -83336150 - MER41A-int LTR ERV1 -4515 1431 1053 4788 147 60 1 chrX 79263767 79264569 -83335361 - MER41A-int LTR ERV1 -5087 859 1 * 4104 98 2 0 chrX 79264654 79265207 -83334723 - MER41A LTR ERV1 0 554 1 1749 176 137 13 chrX 79266602 79266983 -83332947 - MSTA LTR MaLR 0 428 1 8732 158 9 40 chrX 79266983 79268612 -83331318 - MSTA-int LTR MaLR 0 1580 3 1424 168 198 28 chrX 79268617 79268980 -83330950 - MSTA LTR MaLR -3 425 1 203 269 58 0 chrX 79269020 79269072 -83330858 + L2 LINE L2 3259 3313 0 233 284 88 29 chrX 79269118 79269220 -83330710 + MIR SINE MIR 30 137 -125 370 284 37 9 chrX 79269226 79269335 -83330595 + L2 LINE L2 2283 2394 -920 1149 295 38 8 chrX 79269372 79269769 -83330161 - L2 LINE L2 -1526 1788 1380 1330 212 31 44 chrX 79269770 79270116 -83329814 - L1 LINE L1 -1563 4647 4307 2399 57 40 3 chrX 79270116 79270416 -83329514 - AluY SINE Alu 0 311 1 1330 212 31 44 chrX 79270416 79270521 -83329409 - L1 LINE L1 -1903 4307 4202 584 242 54 4 chrX 79270520 79270759 -83329171 - L1 LINE L1 -4516 1615 1308 * 5138 246 74 17 chrX 79270781 79273340 -83326590 - L1M4 LINE L1 -3156 3488 787 346 321 30 89 chrX 79273626 79273863 -83326067 - L1M4 LINE L1 -6319 223 1 25 0 0 0 chrX 79273876 79273901 -83326029 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chrX 79274895 79274918 -83325012 + (CA)n Simple_repeat Simple_repeat 2 24 0 524 271 83 110 chrX 79277053 79277426 -83322504 - MLT1I LTR MaLR -25 384 22 35 0 0 0 chrX 79277502 79277537 -83322393 + AT_rich Low_complexity Low_complexity 1 35 0 2156 121 0 0 chrX 79277538 79277828 -83322102 - AluSx SINE Alu -22 290 1 2455 74 0 10 chrX 79277915 79278226 -83321704 - AluY SINE Alu -2 309 2 270 148 0 0 chrX 79278771 79278825 -83321105 + (TC)n Simple_repeat Simple_repeat 2 55 0 27 0 0 0 chrX 79279265 79279292 -83320638 + AT_rich Low_complexity Low_complexity 1 27 0 34 0 0 0 chrX 79279443 79279477 -83320453 + AT_rich Low_complexity Low_complexity 1 34 0 3544 67 0 2 chrX 79280129 79280574 -83319356 + MLT2A1 LTR ERVL 1 444 0 442 141 0 0 chrX 79281007 79281078 -83318852 - L1MA2 LINE L1 -492 5810 5740 2701 131 48 10 chrX 79281078 79281566 -83318364 + L1MA2 LINE L1 5789 6304 0 220 292 83 52 chrX 79281814 79281910 -83318020 - L2 LINE L2 -10 3262 3164 226 323 68 63 chrX 79282097 79282454 -83317476 - L2 LINE L2 -258 3055 2699 1026 269 39 0 chrX 79282464 79282721 -83317209 + L1MDa LINE L1 18 284 -6256 445 301 22 18 chrX 79282710 79282939 -83316991 + L1M4 LINE L1 3325 3554 -2592 * 5645 130 19 3 chrX 79282938 79284120 -83315810 + L1PA13 LINE L1 4942 6140 -23 289 256 26 60 chrX 79284636 79284753 -83315177 - HAL1b LINE L1 -437 911 799 302 311 68 47 chrX 79285447 79285595 -83314335 - MIR SINE MIR -53 209 59 261 233 0 0 chrX 79285677 79285720 -83314210 + L2 LINE L2 3211 3253 -19 1344 206 91 72 chrX 79285985 79286389 -83313541 - Charlie4a DNA MER1_type -1469 492 76 2250 92 3 25 chrX 79286389 79286705 -83313225 - AluY SINE Alu -2 309 1 1344 206 91 72 chrX 79286705 79286760 -83313170 - Charlie4a DNA MER1_type -1885 76 24 1021 174 47 28 chrX 79287461 79287673 -83312257 + MER20 DNA MER1_type 1 216 -3 3083 48 0 0 chrX 79287798 79288171 -83311759 + L1PA6 LINE L1 5778 6150 -4 7887 100 6 1 chrX 79288657 79289730 -83310200 - THE1-int LTR MaLR -361 1219 142 425 283 66 37 chrX 79289808 79290052 -83309878 - L2 LINE L2 0 3313 3063 22 35 0 0 chrX 79291373 79291402 -83308528 + AT_rich Low_complexity Low_complexity 1 29 0 5912 0 64 0 chrX 79292305 79292705 -83307225 + L1PA14 LINE L1 4081 4453 -1708 5912 106 18 1 chrX 79292705 79294302 -83305628 + L1PA14 LINE L1 4550 6161 0 816 176 8 15 chrX 79294738 79294968 -83304962 + MER89 LTR ERV1 1 328 -231 4771 74 24 1 chrX 79294968 79295976 -83303954 + MER11A LTR ERVK 1 1266 0 1182 156 67 9 chrX 79295976 79296200 -83303730 + MER89 LTR ERV1 323 559 0 1873 138 7 3 chrX 79296289 79296571 -83303359 + AluSx SINE Alu 1 283 -29 21 0 0 0 chrX 79297074 79297095 -83302835 + AT_rich Low_complexity Low_complexity 1 21 0 33 66 0 0 chrX 79297757 79297818 -83302112 + AT_rich Low_complexity Low_complexity 1 61 0 270 176 0 0 chrX 79298299 79298350 -83301580 + (TA)n Simple_repeat Simple_repeat 1 51 0 22 0 0 0 chrX 79298677 79298699 -83301231 + AT_rich Low_complexity Low_complexity 1 22 0 2999 120 20 15 chrX 79299037 79299631 -83300299 - MER4E LTR ERV1 0 766 3 689 60 0 0 chrX 79299636 79299720 -83300210 - MER4E-int LTR ERV1 -3 6755 6672 5231 104 117 116 chrX 79299724 79301267 -83298663 - pTR5 LTR ERV1 0 2438 743 6372 130 72 13 chrX 79301267 79303322 -83296608 - MER4E-int LTR ERV1 -84 6674 4452 1099 139 70 0 chrX 79303321 79303493 -83296437 - MER4E-int LTR ERV1 -2670 4088 3905 * 7745 102 71 31 chrX 79303500 79304513 -83295417 - MER4E-int LTR ERV1 -3837 2921 2291 3389 167 74 59 chrX 79304513 79305327 -83294603 + LTR1B LTR ERV1 1 826 0 7745 102 71 31 chrX 79305327 79306220 -83293710 - MER4E-int LTR ERV1 -4467 2291 1435 7127 119 62 17 chrX 79306196 79306273 -83293657 - MER4E-int LTR ERV1 -5578 1180 1108 * 243 88 0 0 chrX 79306273 79306307 -83293623 + (CA)n Simple_repeat Simple_repeat 1 34 0 7127 119 62 17 chrX 79306307 79307398 -83292532 - MER4E-int LTR ERV1 -5650 1108 3 2902 121 15 37 chrX 79307400 79308007 -83291923 - MER4E LTR ERV1 0 766 1 551 313 30 36 chrX 79309918 79310250 -83289680 + HAL1 LINE L1 1425 1754 -753 361 211 45 96 chrX 79310618 79310774 -83289156 + L1MDa LINE L1 2434 2581 -3959 198 252 171 24 chrX 79311145 79311268 -83288662 + MIR SINE MIR 14 154 -108 514 249 21 37 chrX 79311527 79311716 -83288214 + L2 LINE L2 2445 2630 -684 2174 187 45 34 chrX 79311727 79312582 -83287348 - L1MC/D LINE L1 -615 5744 4871 1643 166 86 92 chrX 79312636 79313105 -83286825 - LTR1B LTR ERV1 0 826 358 3524 59 4 4 chrX 79313105 79313579 -83286351 + L1PA5 LINE L1 4731 5204 -942 3775 57 2 0 chrX 79313579 79314042 -83285888 + L1PA5 LINE L1 5680 6153 -1 253 213 12 12 chrX 79314077 79314157 -83285773 + MER4B-int LTR ERV1 3007 3086 -3672 637 198 0 8 chrX 79314165 79314286 -83285644 + MER4B-int LTR ERV1 3421 3540 -3218 2291 36 0 0 chrX 79314286 79314565 -83285365 + L1P LINE L1 4881 5159 -987 2891 66 0 5 chrX 79314565 79314941 -83284989 + L1PA5 LINE L1 5773 6149 -5 302 167 0 0 chrX 79314942 79314990 -83284940 + MER4B-int LTR ERV1 3527 3574 -3184 1612 158 10 30 chrX 79365541 79365839 -83234091 + AluJo SINE Alu 1 292 -20 413 336 14 7 chrX 79366424 79366570 -83233360 + MIR3 SINE MIR 19 165 -43 778 144 0 14 chrX 79366773 79366912 -83233018 - L1MA4 LINE L1 -1 6299 6163 2514 74 3 0 chrX 79367239 79367550 -83232380 + AluSp SINE Alu 1 312 -1 319 331 25 33 chrX 79368525 79368646 -83231284 - MIR SINE MIR -57 151 32 538 186 0 0 chrX 79369014 79369111 -83230819 - AluJ/FLAM SINE Alu -215 97 1 34 24 0 0 chrX 79369218 79369259 -83230671 + AT_rich Low_complexity Low_complexity 1 41 0 1008 173 37 28 chrX 79369721 79369935 -83229995 - MER20 DNA MER1_type -3 216 1 998 194 39 18 chrX 79370634 79371058 -83228872 + Charlie4a DNA MER1_type 24 492 -16 261 233 0 0 chrX 79371319 79371362 -83228568 - L2 LINE L2 -19 3253 3211 208 0 30 30 chrX 79371469 79371502 -83228428 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 328 236 31 19 chrX 79371661 79371801 -83228129 + L1MC4 LINE L1 1996 6983 -1339 2524 179 5 35 chrX 79371839 79371871 -83228059 - L1PA13 LINE L1 -4640 2934 2903 2029 148 0 0 chrX 79371871 79372168 -83227762 - AluSx SINE Alu -15 297 1 2524 179 5 35 chrX 79372168 79372699 -83227231 - L1PA13 LINE L1 -4671 2903 2388 1312 166 5 5 chrX 79372697 79372908 -83227022 - L1PA13 LINE L1 -5996 1585 1375 * 4537 163 21 38 chrX 79372909 79373900 -83226030 + MER11C LTR ERVK 1 1067 -4 8452 223 7 23 chrX 79373903 79375387 -83224543 - L1PA12 LINE L1 -5873 1708 467 4645 122 27 69 chrX 79375387 79375667 -83224263 - LTR25 LTR ERV1 -1 793 503 1787 110 114 0 chrX 79375667 79375931 -83223999 + AluSc SINE Alu 1 294 -15 4645 122 27 69 chrX 79375931 79376478 -83223452 - LTR25 LTR ERV1 -291 503 1 8452 223 7 23 chrX 79376478 79376934 -83222996 - L1PA12 LINE L1 -7114 467 5 299 283 75 32 chrX 79376940 79377127 -83222803 + L1M4 LINE L1 3761 3955 -2191 495 287 98 11 chrX 79378162 79378336 -83221594 + MIR3 SINE MIR 14 202 -6 2014 98 29 4 chrX 79378774 79379100 -83220830 - AluSp SINE Alu 0 333 1 42 57 0 0 chrX 79379156 79379226 -83220704 + AT_rich Low_complexity Low_complexity 1 70 0 5995 91 6 4 chrX 79379292 79380528 -83219402 - L1PA8A LINE L1 -1 6130 4875 241 292 86 65 chrX 79381030 79381513 -83218417 + L1M4 LINE L1 4386 4882 -1264 11258 41 3 0 chrX 79381513 79383654 -83216276 - L1PA5 LINE L1 0 6154 4009 241 292 86 65 chrX 79383654 79383694 -83216236 + L1M4 LINE L1 4882 4920 -1226 878 144 72 7 chrX 79383751 79383904 -83216026 + THE1C LTR MaLR 1 163 -212 714 203 0 0 chrX 79383904 79384037 -83215893 - FLAM_C SINE Alu -10 133 1 554 325 39 82 chrX 79384047 79384511 -83215419 + L2 LINE L2 2618 3064 -208 321 253 0 13 chrX 79384739 79384818 -83215112 + MIR SINE MIR 174 251 -11 186 294 20 0 chrX 79385272 79385323 -83214607 - MIR SINE MIR -60 148 97 308 70 0 0 chrX 79385856 79385899 -83214031 + MADE1 DNA Mariner 1 43 -37 345 150 0 0 chrX 79386195 79386255 -83213675 - Charlie5 DNA MER1_type -27 2585 2526 201 248 33 16 chrX 79386990 79387111 -83212819 + (TTATA)n Simple_repeat Simple_repeat 5 127 0 686 193 58 41 chrX 79388063 79388234 -83211696 - LTR52 LTR ERVL -8 413 240 2037 150 0 0 chrX 79388238 79388544 -83211386 + AluJb SINE Alu 5 310 -2 362 200 75 0 chrX 79388594 79388674 -83211256 - LTR52 LTR ERVL -334 87 2 880 316 95 22 chrX 79390131 79390522 -83209408 - L2 LINE L2 -729 2585 2147 870 228 27 0 chrX 79390522 79390706 -83209224 - MER5A DNA MER1_type 0 189 1 880 316 95 22 chrX 79390706 79390818 -83209112 - L2 LINE L2 -1167 2147 2045 2388 76 0 3 chrX 79391176 79391480 -83208450 - AluSg SINE Alu -7 303 1 25 31 0 0 chrX 79393171 79393203 -83206727 + AT_rich Low_complexity Low_complexity 1 32 0 1553 295 66 12 chrX 79395120 79395697 -83204233 + L1MEc LINE L1 22 629 -5767 366 122 0 0 chrX 79395716 79395765 -83204165 - Alu SINE Alu -14 286 238 603 217 0 0 chrX 79395765 79395880 -83204050 - AluJo/FLAM SINE Alu -197 115 1 963 208 49 4 chrX 79395883 79396148 -83203782 + L1MEc LINE L1 641 917 -5479 298 224 17 44 chrX 79396145 79396257 -83203673 + L1MEc LINE L1 2280 2394 -3821 * 7174 198 45 13 chrX 79396336 79397969 -83201961 + L1PA16 LINE L1 2663 4242 -1924 2030 137 0 3 chrX 79397969 79398296 -83201634 + AluSq SINE Alu 1 326 0 7174 198 45 13 chrX 79398296 79399983 -83199947 + L1PA16 LINE L1 4242 6165 -1 941 251 85 19 chrX 79400059 79400425 -83199505 + L1MEc LINE L1 3417 3806 -2409 * 16870 160 17 51 chrX 79400421 79400758 -83199172 - L1PA13 LINE L1 -2 7599 7252 1846 122 97 31 chrX 79400758 79401110 -83198820 - THE1C LTR MaLR 0 375 1 513 0 0 0 chrX 79401119 79401176 -83198754 + (TG)n Simple_repeat Simple_repeat 2 58 0 2055 121 3 0 chrX 79401179 79401461 -83198469 - AluSp SINE Alu -30 283 1 16870 160 17 51 chrX 79401461 79404248 -83195682 - L1PA13 LINE L1 -359 7242 4364 1616 116 163 0 chrX 79404248 79404506 -83195424 - AluSp SINE Alu -3 300 1 16870 160 17 51 chrX 79404506 79409266 -83190664 - L1PA13 LINE L1 -3237 4364 1 1380 186 15 12 chrX 79409261 79409599 -83190331 + L1M4 LINE L1 4966 5304 -842 * 2228 85 58 0 chrX 79409883 79410178 -83189752 + AluSx SINE Alu 1 312 0 2341 106 0 0 chrX 79410481 79410784 -83189146 + AluSx SINE Alu 1 303 -9 2347 94 0 0 chrX 79410973 79411271 -83188659 - AluSx SINE Alu -14 298 1 430 391 60 11 chrX 79411529 79411813 -83188117 - L2 LINE L2 -530 2784 2487 772 177 33 6 chrX 79412082 79412263 -83187667 + L1PB3 LINE L1 5182 5367 -779 932 129 65 0 chrX 79412264 79412419 -83187511 + AluSg/x SINE Alu 137 301 -11 4662 141 10 1 chrX 79412419 79413207 -83186723 + L1PB3 LINE L1 5359 6153 -1 23 54 0 0 chrX 79413894 79413931 -83185999 + AT_rich Low_complexity Low_complexity 1 37 0 2138 82 4 4 chrX 79415574 79415881 -83184049 - AluSg SINE Alu 0 307 1 1320 242 62 17 chrX 79416232 79416637 -83183293 - LTR40a LTR ERVL -2 517 95 32 26 0 0 chrX 79416799 79416838 -83183092 + AT_rich Low_complexity Low_complexity 1 39 0 1520 182 0 66 chrX 79417326 79417644 -83182286 + AluJb SINE Alu 1 297 -15 519 223 0 10 chrX 79417790 79417893 -83182037 + MER3 DNA MER1_type 1 102 -107 4970 123 14 17 chrX 79419105 79419886 -83180044 - MER4E LTR ERV1 0 779 1 1913 116 0 60 chrX 79420055 79420389 -83179541 + AluSg SINE Alu 1 316 0 10543 130 82 35 chrX 79421060 79421881 -83178049 - MER4E-int LTR ERV1 -111 6647 5865 2128 105 0 3 chrX 79421881 79422167 -83177763 + AluSq SINE Alu 20 304 -9 10543 130 82 35 chrX 79422167 79422535 -83177395 - MER4E-int LTR ERV1 -893 5865 5515 2200 91 3 0 chrX 79422535 79422822 -83177108 - AluY SINE Alu -23 288 1 10543 130 82 35 chrX 79422822 79423730 -83176200 - MER4E-int LTR ERV1 -1243 5515 4452 3767 149 35 8 chrX 79423729 79424379 -83175551 - MER4E-int LTR ERV1 -2670 4088 3421 * 1622 128 56 43 chrX 79424366 79424428 -83175502 - MER4E-int LTR ERV1 -3664 3094 3034 * 2278 103 13 7 chrX 79424428 79424730 -83175200 - AluSx SINE Alu -8 304 1 1622 128 56 43 chrX 79424730 79425041 -83174889 - MER4E-int LTR ERV1 -3724 3034 2716 1710 180 78 34 chrX 79425063 79425501 -83174429 + LTR2B LTR ERV1 34 490 0 51401 48 20 15 chrX 79425501 79426894 -83173036 + Harlequin LTR ERV1 1 1384 -5512 225 0 0 0 chrX 79426894 79426919 -83173011 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 51401 48 20 15 chrX 79426919 79432381 -83167549 + Harlequin LTR ERV1 1384 6896 0 11633 28 7 0 chrX 79432474 79434636 -83165294 + L1PA4 LINE L1 4008 6175 0 1615 176 92 18 chrX 79434636 79435016 -83164914 + LTR2B LTR ERV1 83 490 0 7037 193 72 67 chrX 79435016 79435265 -83164665 - MER4E-int LTR ERV1 -4040 2718 2472 2207 120 3 3 chrX 79435265 79435566 -83164364 + AluSx SINE Alu 1 301 -11 7037 193 72 67 chrX 79435566 79438018 -83161912 - MER4E-int LTR ERV1 -4286 2472 1 4107 119 52 5 chrX 79438018 79438673 -83161257 - MER4E LTR ERV1 0 779 94 2009 92 70 6 chrX 79438673 79439039 -83160891 - MER4E LTR ERV1 0 450 1 695 57 0 75 chrX 79439039 79439145 -83160785 - MER4E LTR ERV1 -681 98 1 3134 94 15 11 chrX 79439157 79439543 -83160387 - L1PA13 LINE L1 -3 6160 5770 4494 55 0 42 chrX 79439543 79440160 -83159770 + LTR10C LTR ERV1 1 591 0 3134 94 15 11 chrX 79440160 79440251 -83159679 - L1PA13 LINE L1 -393 5770 5681 2369 131 21 45 chrX 79440251 79440680 -83159250 + L1P4 LINE L1 4916 5331 -837 2215 122 6 0 chrX 79440680 79440991 -83158939 - AluSq SINE Alu 0 313 1 2369 131 21 45 chrX 79440991 79441328 -83158602 + L1P4 LINE L1 5331 5675 -493 457 270 14 0 chrX 79441469 79441608 -83158322 + MIR SINE MIR 50 192 -70 21 0 0 0 chrX 79444031 79444052 -83155878 + AT_rich Low_complexity Low_complexity 1 21 0 2075 187 23 23 chrX 79444210 79444341 -83155589 + L1MB7 LINE L1 5544 5674 -510 2615 131 11 7 chrX 79444341 79444775 -83155155 + L1PA15 LINE L1 5728 6163 -2 2075 187 23 23 chrX 79444775 79445082 -83154848 + L1MB7 LINE L1 5673 5982 -202 998 227 14 75 chrX 79445077 79445348 -83154582 - L1M4 LINE L1 -6178 364 78 * 184 29 29 29 chrX 79445348 79445382 -83154548 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2077 127 0 3 chrX 79445384 79445667 -83154263 - AluSx SINE Alu -30 282 1 998 227 14 75 chrX 79445667 79445740 -83154190 - L1M4 LINE L1 -6465 77 38 * 24837 131 9 15 chrX 79445737 79446692 -83153238 - L1PA8A LINE L1 0 6446 5487 207 0 0 0 chrX 79446692 79446715 -83153215 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24837 131 9 15 chrX 79446715 79449225 -83150705 - L1PA8A LINE L1 -959 5487 2963 2048 118 31 0 chrX 79449225 79449512 -83150418 - AluSg SINE Alu -14 296 1 24837 131 9 15 chrX 79449512 79452460 -83147470 - L1PA8A LINE L1 -3483 2963 8 629 169 24 0 chrX 79452518 79452642 -83147288 + L1MB7 LINE L1 6028 6154 -30 1835 185 11 23 chrX 79452674 79453160 -83146770 - MER74A LTR ERVL -17 541 1 2259 97 6 10 chrX 79454183 79454494 -83145436 - AluY SINE Alu 0 311 2 4575 119 107 20 chrX 79455078 79456409 -83143521 + pTR5 LTR ERV1 741 2606 0 26 50 0 0 chrX 79458292 79458332 -83141598 + AT_rich Low_complexity Low_complexity 1 40 0 2479 78 0 0 chrX 79458831 79459139 -83140791 - AluSg SINE Alu -2 308 1 2145 92 3 3 chrX 79459518 79459842 -83140088 + AluSp SINE Alu 29 352 0 24 53 0 0 chrX 79461568 79461606 -83138324 + AT_rich Low_complexity Low_complexity 1 38 0 554 134 0 21 chrX 79462515 79462612 -83137318 + L1PA11 LINE L1 6077 6171 -3 2203 110 3 3 chrX 79463013 79463312 -83136618 + AluSc SINE Alu 1 299 -10 194 0 39 0 chrX 79464080 79464106 -83135824 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1766 132 33 50 chrX 79464742 79465045 -83134885 + AluJo SINE Alu 1 298 -14 5739 62 10 1 chrX 79466128 79466906 -83133024 - L1PA8 LINE L1 0 6172 5388 546 62 62 0 chrX 79466902 79466983 -83132947 + L1P LINE L1 5288 5373 -781 * 2153 141 18 6 chrX 79467111 79467451 -83132479 + MER2 DNA MER2_type 1 344 0 2225 112 0 0 chrX 79468095 79468389 -83131541 + AluSx SINE Alu 1 294 -18 310 326 23 30 chrX 79468520 79468652 -83131278 - L2 LINE L2 -5 3267 3137 247 364 34 8 chrX 79468994 79469112 -83130818 + MER5B DNA MER1_type 9 129 -49 1374 218 109 51 chrX 79469169 79469655 -83130275 - L1MC4 LINE L1 -139 7903 7390 1244 218 38 19 chrX 79469656 79470028 -83129902 - L1MC4 LINE L1 -935 7107 6729 414 239 18 0 chrX 79470043 79470152 -83129778 - L1MC4 LINE L1 -1470 6572 6462 283 109 0 62 chrX 79470394 79470458 -83129472 + (GGGAA)n Simple_repeat Simple_repeat 4 63 0 365 297 8 8 chrX 79470464 79470592 -83129338 - LTR16B LTR ERVL -1 463 336 759 146 76 81 chrX 79471024 79471209 -83128721 + L1PA15-16 LINE L1 16 199 -7366 577 364 12 0 chrX 79471217 79471563 -83128367 + L1PA15-16 LINE L1 766 1115 -6450 2670 272 45 25 chrX 79472078 79472229 -83127701 + L1PA15-16 LINE L1 1806 1952 -5614 2530 86 43 0 chrX 79472229 79472603 -83127327 + L1PA5 LINE L1 5763 6152 -2 2670 272 45 25 chrX 79472603 79473834 -83126096 + L1PA15-16 LINE L1 1952 3193 -4373 11820 29 5 0 chrX 79473856 79475335 -83124595 + L1P LINE L1 3387 4872 -1274 3197 226 42 27 chrX 79475335 79475848 -83124082 + L1M2 LINE L1 2507 3010 -3838 2123 122 0 30 chrX 79475848 79476152 -83123778 + AluSx SINE Alu 3 297 -15 3197 226 42 27 chrX 79476152 79477021 -83122909 + L1M2 LINE L1 3010 3912 -2936 6903 65 3 4 chrX 79477022 79477976 -83121954 + L1PA7 LINE L1 5197 6154 0 407 180 0 0 chrX 79478065 79478126 -83121804 + AluS SINE Alu 1 61 -250 2130 138 23 0 chrX 79478133 79478482 -83121448 + L1PB4 LINE L1 5799 6155 -1 242 360 12 35 chrX 79478541 79478713 -83121217 - L2 LINE L2 -2184 1130 963 257 213 16 0 chrX 79478717 79478778 -83121152 + MLT1F LTR MaLR 3 64 -503 1303 211 74 0 chrX 79478794 79479093 -83120837 + MLT1F LTR MaLR 222 542 0 297 385 6 12 chrX 79479144 79479305 -83120625 - L2 LINE L2 -2418 896 737 390 343 69 6 chrX 79479441 79479616 -83120314 + MER5A DNA MER1_type 4 189 0 469 314 162 17 chrX 79479868 79480158 -83119772 + L2 LINE L2 2921 3252 -61 5956 102 82 2 chrX 79480481 79481706 -83118224 - L1PA13 LINE L1 -5 6158 4893 3473 119 4 17 chrX 79481706 79482235 -83117695 + L1PA15 LINE L1 5632 6155 -10 183 42 0 0 chrX 79482248 79482272 -83117658 + (CAA)n Simple_repeat Simple_repeat 1 24 0 485 231 52 86 chrX 79482555 79482880 -83117050 + MER97c DNA MER1_type? 769 1082 -8 255 196 0 0 chrX 79482886 79482937 -83116993 + L2 LINE L2 3263 3313 0 630 254 281 16 chrX 79483054 79483401 -83116529 + L2 LINE L2 2660 2914 -399 2320 50 3 20 chrX 79483401 79483737 -83116193 - AluY SINE Alu 0 311 1 630 254 281 16 chrX 79483737 79483861 -83116069 + L2 LINE L2 2914 3312 -1 187 316 13 25 chrX 79484909 79484988 -83114942 - L2 LINE L2 -10 3262 3185 187 364 92 46 chrX 79485031 79485358 -83114572 + L2 LINE L2 2596 2937 -377 189 0 0 0 chrX 79485491 79485512 -83114418 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2064 73 0 56 chrX 79485515 79485817 -83114113 - AluSg SINE Alu -25 285 1 327 289 170 6 chrX 79485882 79486041 -83113889 + L2 LINE L2 3128 3312 -1 630 245 98 6 chrX 79486340 79486503 -83113427 - MIR SINE MIR -12 250 73 614 247 94 61 chrX 79486587 79486814 -83113116 - MIR SINE MIR -6 256 18 22 0 0 0 chrX 79486908 79486930 -83113000 + AT_rich Low_complexity Low_complexity 1 22 0 841 276 26 4 chrX 79487035 79487263 -83112667 - MIR SINE MIR -15 247 15 402 253 0 11 chrX 79488187 79488282 -83111648 - MIR SINE MIR -13 249 156 1609 190 41 40 chrX 79488475 79488894 -83111036 - L1MA9 LINE L1 0 6312 5795 351 0 0 0 chrX 79488894 79488933 -83110997 + (TG)n Simple_repeat Simple_repeat 2 40 0 1609 190 41 40 chrX 79488933 79489091 -83110839 - L1MA9 LINE L1 -517 5795 5639 * 4343 162 40 10 chrX 79489089 79489976 -83109954 - L1MA9 LINE L1 -1460 4686 3774 2841 104 24 32 chrX 79489996 79490457 -83109473 - L1PA14 LINE L1 0 6161 5705 1379 179 19 0 chrX 79490458 79490721 -83109209 - L1MC/D LINE L1 -762 5582 5315 12456 188 34 13 chrX 79490723 79495901 -83104029 - L1PB1 LINE L1 -7 6860 1791 388 0 0 0 chrX 79495901 79495944 -83103986 + (TTTA)n Simple_repeat Simple_repeat 4 164 0 2149 96 3 0 chrX 79495944 79496226 -83103704 - AluSq SINE Alu -1 325 1 12456 188 34 13 chrX 79496226 79496559 -83103371 - L1PB1 LINE L1 -5076 1791 1466 458 84 84 0 chrX 79496559 79496630 -83103300 - MADE1 DNA Mariner -3 77 1 12456 188 34 13 chrX 79496630 79498417 -83101513 - L1PB1 LINE L1 -5401 1466 1 408 143 0 0 chrX 79498426 79498496 -83101434 - L1 LINE L1 -2358 4809 4740 2083 178 71 10 chrX 79498496 79498890 -83101040 - MSTB LTR MaLR 0 426 9 1626 198 36 5 chrX 79498913 79499328 -83100602 - L1 LINE L1 -4679 2419 1992 527 310 80 93 chrX 79499339 79499538 -83100392 - L1 LINE L1 -5417 1751 1551 1429 264 3 11 chrX 79499538 79499906 -83100024 + MLT1A1 LTR MaLR 1 365 0 527 310 80 93 chrX 79499906 79500406 -83099524 - L1 LINE L1 -5617 1551 1061 4445 213 89 91 chrX 79500516 79502013 -83097917 + L1 LINE L1 3 1496 -5534 * 5882 159 25 18 chrX 79502007 79503165 -83096765 + L1 LINE L1 4000 5165 -1941 1212 161 29 11 chrX 79503166 79503502 -83096428 + MSTB1 LTR MaLR 1 431 -1 2631 182 53 2 chrX 79503502 79504106 -83095824 + L1 LINE L1 5163 5797 -1309 821 230 18 46 chrX 79504162 79504418 -83095512 - L1M4 LINE L1 -5389 1466 1197 723 264 57 49 chrX 79504650 79504915 -83095015 - L1M4 LINE L1 -5644 1215 949 1994 177 62 38 chrX 79505312 79505730 -83094200 - MSTA LTR MaLR 0 428 1 8136 180 42 24 chrX 79505730 79507352 -83092578 - MSTA-int LTR MaLR 0 1651 1 1825 168 80 46 chrX 79507352 79507764 -83092166 - MSTA LTR MaLR 0 428 3 442 217 12 96 chrX 79507767 79507933 -83091997 - L1M4b LINE L1 -5493 1366 1215 544 108 54 18 chrX 79507970 79508081 -83091849 - L1MDa LINE L1 -3922 2618 2504 435 277 113 17 chrX 79508082 79508259 -83091671 - L1M4b LINE L1 -6653 206 13 764 161 27 7 chrX 79508268 79508417 -83091513 - L1MC/D LINE L1 -504 5738 5587 1131 224 83 6 chrX 79508441 79508720 -83091210 - MLT1D LTR MaLR -2 503 217 5627 109 13 4 chrX 79508760 79509603 -83090327 - L1MA1 LINE L1 -7 6295 5445 360 357 25 30 chrX 79509608 79509807 -83090123 + MIR SINE MIR 59 256 -6 5390 113 35 10 chrX 79510003 79510892 -83089038 + L1PB2 LINE L1 5262 6171 0 2119 167 3 3 chrX 79510899 79511270 -83088660 + L1PB3 LINE L1 5778 6148 -6 26 0 0 0 chrX 79511282 79511308 -83088622 + AT_rich Low_complexity Low_complexity 1 26 0 293 206 32 16 chrX 79511957 79512020 -83087910 - L2 LINE L2 -4 3309 3246 237 328 69 8 chrX 79512009 79512140 -83087790 - L2 LINE L2 -287 2985 2847 * 2414 71 3 0 chrX 79512591 79512888 -83087042 + AluSp SINE Alu 1 298 -15 205 279 0 0 chrX 79513590 79513633 -83086297 + MIR SINE MIR 215 257 -5 507 261 87 11 chrX 79513800 79513984 -83085946 + MLT1L LTR MaLR 417 614 -1 236 275 150 12 chrX 79513984 79514064 -83085866 + MIR SINE MIR 159 249 -13 23 33 0 0 chrX 79514518 79514548 -83085382 + AT_rich Low_complexity Low_complexity 1 30 0 6113 175 17 14 chrX 79514818 79517052 -83082878 - L1PA16 LINE L1 0 7604 5364 2952 113 10 33 chrX 79517065 79517552 -83082378 - L1PB2 LINE L1 -3 6148 5673 2463 188 16 16 chrX 79517552 79517577 -83082353 + L1 LINE L1 4706 4730 -1416 1917 144 72 26 chrX 79517577 79517925 -83082005 + THE1B LTR MaLR 1 364 0 2463 188 16 16 chrX 79517925 79518446 -83081484 + L1 LINE L1 4729 5252 -894 * 8113 257 30 30 chrX 79518445 79521414 -83078516 - L1PA16 LINE L1 -2206 5378 2410 1747 284 41 74 chrX 79521460 79522395 -83077535 - L1PA16 LINE L1 -6677 904 1 4104 188 30 3 chrX 79522416 79523280 -83076650 + L1 LINE L1 3088 3974 -2172 458 275 0 0 chrX 79523282 79523391 -83076539 - MER82 DNA MER2_type -543 110 2 404 233 215 37 chrX 79523776 79523939 -83075991 - MER58C DNA MER1_type -15 200 9 689 158 207 18 chrX 79524379 79524543 -83075387 + MER3 DNA MER1_type 14 208 -1 222 219 0 0 chrX 79524606 79524647 -83075283 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 2281 96 3 0 chrX 79524647 79524939 -83074991 - AluSq SINE Alu -20 293 1 763 245 49 10 chrX 79526272 79526476 -83073454 + L2 LINE L2 3102 3313 0 1509 273 60 99 chrX 79527251 79528149 -83071781 - L3 LINE CR1 -14 1563 701 239 333 69 0 chrX 79528171 79528243 -83071687 + MIR SINE MIR 18 94 -168 557 249 70 35 chrX 79528244 79528501 -83071429 - L1ME LINE L1 -297 5824 5559 206 228 25 89 chrX 79528504 79528583 -83071347 - L2 LINE L2 0 3272 3199 21 36 0 0 chrX 79528758 79528786 -83071144 + AT_rich Low_complexity Low_complexity 1 28 0 1798 149 7 11 chrX 79529865 79530171 -83069759 + AluJb SINE Alu 6 310 0 825 182 43 0 chrX 79530639 79530826 -83069104 - L1MA8 LINE L1 -22 6269 6075 28 0 0 0 chrX 79530965 79530993 -83068937 + AT_rich Low_complexity Low_complexity 1 28 0 335 307 27 13 chrX 79531282 79531432 -83068498 - L1ME3A LINE L1 -284 5886 5735 2445 243 15 7 chrX 79531914 79532461 -83067469 - MLT1H1 LTR MaLR 0 555 5 209 136 45 0 chrX 79534886 79534930 -83065000 + (ATTG)n Simple_repeat Simple_repeat 3 48 0 596 271 93 27 chrX 79534938 79535163 -83064767 - MIR SINE MIR 0 262 23 415 164 0 0 chrX 79536472 79536545 -83063385 + L1M4 LINE L1 5386 5458 -720 2424 75 3 0 chrX 79536820 79537112 -83062818 + AluSp SINE Alu 1 293 -20 294 311 0 8 chrX 79537118 79537141 -83062789 - L1MA10 LINE L1 -40 6294 6272 1684 211 88 12 chrX 79537141 79537548 -83062382 - L1ME1 LINE L1 -53 6113 5676 290 65 65 0 chrX 79537822 79537884 -83062046 + (TA)n Simple_repeat Simple_repeat 2 67 0 238 216 0 65 chrX 79537908 79538061 -83061869 + (TA)n Simple_repeat Simple_repeat 1 143 0 283 279 0 0 chrX 79538336 79538404 -83061526 - MER112 DNA MER1_type 0 260 193 20062 129 12 15 chrX 79538421 79539238 -83060692 - L1PA10 LINE L1 -1 6167 5349 20772 32 1 1 chrX 79539238 79542520 -83057410 - L1PA4 LINE L1 -3 6152 2870 20062 129 12 15 chrX 79542520 79545962 -83053968 - L1PA10 LINE L1 -819 5349 1907 384 22 0 0 chrX 79547986 79548031 -83051899 + (CA)n Simple_repeat Simple_repeat 2 46 0 264 301 8 113 chrX 79548550 79548683 -83051247 - MIR3 SINE MIR -6 202 84 2429 90 0 0 chrX 79548752 79549064 -83050866 - AluSx SINE Alu 0 312 1 487 246 142 46 chrX 79549105 79549451 -83050479 - HAL1b LINE L1 -2 1346 968 1542 124 0 0 chrX 79549771 79549996 -83049934 + AluSg/x SINE Alu 86 310 -2 26 30 0 0 chrX 79550496 79550529 -83049401 + AT_rich Low_complexity Low_complexity 1 33 0 673 126 42 0 chrX 79550929 79551163 -83048767 - L1MA9 LINE L1 -22 6290 5951 * 1591 149 17 33 chrX 79551162 79551463 -83048467 + L1MA9 LINE L1 5636 5931 -381 192 352 0 23 chrX 79551608 79551696 -83048234 - L2 LINE L2 -3 3310 3225 654 294 72 53 chrX 79551788 79552171 -83047759 + L1ME4a LINE L1 4888 5262 -859 2377 66 0 47 chrX 79552171 79552491 -83047439 + AluY SINE Alu 1 305 -6 654 294 72 53 chrX 79552491 79552985 -83046945 + L1ME4a LINE L1 5262 5772 -349 249 305 11 52 chrX 79552996 79553170 -83046760 + L1ME4a LINE L1 5754 5920 -201 22 0 0 0 chrX 79553204 79553226 -83046704 + AT_rich Low_complexity Low_complexity 1 22 0 368 204 0 11 chrX 79554006 79554099 -83045831 + L1MA9 LINE L1 6221 6312 0 21 57 0 0 chrX 79554291 79554326 -83045604 + AT_rich Low_complexity Low_complexity 1 35 0 511 290 75 63 chrX 79555529 79555784 -83044146 - MIR SINE MIR 0 262 5 1726 189 18 37 chrX 79556226 79556607 -83043323 - MLT1A2 LTR MaLR 0 374 1 784 261 56 5 chrX 79556711 79556926 -83043004 + MIR SINE MIR 12 237 -25 21 36 0 0 chrX 79556938 79556966 -83042964 + AT_rich Low_complexity Low_complexity 1 28 0 347 238 71 0 chrX 79557357 79557441 -83042489 + L1MC4 LINE L1 6614 6703 -1339 338 267 47 0 chrX 79557381 79557467 -83042463 - L1MC4 LINE L1 -1339 6703 6614 * 34659 64 6 8 chrX 79557470 79562879 -83037051 - L1PA6 LINE L1 -5 6149 752 1270 192 33 0 chrX 79562887 79563159 -83036771 + MER58B DNA MER1_type 47 340 -1 738 263 61 63 chrX 79563403 79563955 -83035975 + L1MCc LINE L1 1168 2191 -4681 2293 103 0 0 chrX 79564493 79564793 -83035137 - AluY SINE Alu -11 300 1 288 319 12 80 chrX 79564837 79565000 -83034930 + MER5B DNA MER1_type 2 153 -25 1286 159 49 37 chrX 79565402 79565768 -83034162 - Charlie4a DNA MER1_type -61 447 7 21 0 0 0 chrX 79566005 79566026 -83033904 + AT_rich Low_complexity Low_complexity 1 21 0 640 226 77 46 chrX 79566256 79566451 -83033479 + MIR SINE MIR 38 238 -24 * 1881 275 207 20 chrX 79566450 79567063 -83032867 + L2 LINE L2 1884 2381 -932 2589 37 0 0 chrX 79567063 79567357 -83032573 - AluY SINE Alu -17 294 1 1881 275 207 20 chrX 79567357 79567901 -83032029 + L2 LINE L2 2381 3263 -50 735 197 0 0 chrX 79568352 79568530 -83031400 + (TA)n Simple_repeat Simple_repeat 2 179 0 252 0 0 0 chrX 79568621 79568649 -83031281 + (T)n Simple_repeat Simple_repeat 1 28 0 215 336 212 7 chrX 79568788 79569071 -83030859 + L2 LINE L2 1243 1583 -1731 1882 133 18 3 chrX 79569420 79569706 -83030224 - AluJb SINE Alu -22 290 1 275 375 0 0 chrX 79570105 79570193 -83029737 + L2 LINE L2 2569 2656 -658 623 296 26 79 chrX 79570199 79570618 -83029312 - MLT1J LTR MaLR -4 507 111 279 333 75 74 chrX 79570788 79571125 -83028805 + L2 LINE L2 2738 3078 -194 527 105 13 0 chrX 79571128 79571204 -83028726 - FLAM_A SINE Alu -22 120 44 2148 117 3 32 chrX 79571261 79571577 -83028353 + AluSq SINE Alu 1 307 -6 599 163 0 0 chrX 79572245 79572343 -83027587 + FLAM_C SINE Alu 40 137 -6 266 221 65 13 chrX 79572346 79572423 -83027507 - HsTC2 DNA Tc2 -1816 82 2 181 200 20 60 chrX 79572914 79572964 -83026966 - L2 LINE L2 -5 3308 3261 1923 143 28 0 chrX 79573895 79574182 -83025748 + AluJb SINE Alu 6 300 -12 1820 118 39 32 chrX 79574765 79575045 -83024885 + AluJo SINE Alu 1 282 -30 1375 255 112 9 chrX 79575351 79575771 -83024159 + L1MB4 LINE L1 31 493 -5891 10878 206 73 32 chrX 79575788 79575848 -83024082 + L1MB4 LINE L1 552 608 -5808 2866 3 0 0 chrX 79575848 79576157 -83023773 + AluYa5 SINE Alu 1 309 -2 10878 206 73 32 chrX 79576157 79577356 -83022574 + L1MB4 LINE L1 608 1756 -4660 1232 211 26 4 chrX 79577356 79577588 -83022342 - MER8 DNA MER2_type 0 239 3 10878 206 73 32 chrX 79577588 79577650 -83022280 + L1MB4 LINE L1 1756 1814 -4602 2011 132 17 14 chrX 79577650 79577945 -83021985 - AluSq SINE Alu -17 296 1 10878 206 73 32 chrX 79577945 79580227 -83019703 + L1MB4 LINE L1 1814 4001 -2415 1929 119 45 0 chrX 79580227 79580533 -83019397 + AluSx SINE Alu 1 318 0 10878 206 73 32 chrX 79580533 79582389 -83017541 + L1MB4 LINE L1 4001 6253 -163 1903 39 0 0 chrX 79582389 79582620 -83017310 - L1PA4 LINE L1 -3 6152 5922 10878 206 73 32 chrX 79582620 79582754 -83017176 + L1MB4 LINE L1 6253 6380 -36 1307 142 40 13 chrX 79583042 79583267 -83016663 - MER46A DNA MER2_type 0 236 6 1817 146 60 33 chrX 79584914 79585249 -83014681 + MER2 DNA MER2_type 1 344 0 255 210 99 25 chrX 79585264 79585345 -83014585 - L1M4 LINE L1 -1319 4827 4741 238 263 138 12 chrX 79585484 79585564 -83014366 - L2 LINE L2 -494 2820 2731 183 216 0 0 chrX 79585621 79585658 -83014272 + L2 LINE L2 3183 3219 -94 572 276 56 50 chrX 79587368 79587588 -83012342 - MIR SINE MIR -13 249 30 2255 97 0 3 chrX 79590031 79590319 -83009611 + AluSq SINE Alu 2 288 -25 339 291 209 5 chrX 79590339 79590545 -83009385 - MIR SINE MIR -4 258 11 24 0 0 0 chrX 79590721 79590745 -83009185 + AT_rich Low_complexity Low_complexity 1 24 0 437 246 123 22 chrX 79590760 79590939 -83008991 - MIR SINE MIR -19 243 47 766 232 68 32 chrX 79591133 79591353 -83008577 - MIR SINE MIR 0 262 35 4208 144 20 26 chrX 79592226 79592372 -83007558 - MER50 LTR ERV1 -23 711 565 2143 117 0 3 chrX 79592372 79592662 -83007268 + AluSx SINE Alu 1 289 -23 4208 144 20 26 chrX 79592662 79593231 -83006699 - MER50 LTR ERV1 -169 565 1 2481 108 12 30 chrX 79593231 79593647 -83006283 - MER50-int LTR ERV1 -8 7197 4918 11348 91 30 1 chrX 79593656 79595205 -83004725 - MER50-int LTR ERV1 -1081 6124 4531 7009 123 2 4 chrX 79595204 79596385 -83003545 - MER50-int LTR ERV1 -5914 1291 34 * 393 219 104 10 chrX 79596353 79596449 -83003481 - MER50-int LTR ERV1 -7100 105 1 * 2461 171 79 6 chrX 79596492 79597085 -83002845 - MER50 LTR ERV1 -23 711 1 3799 149 10 5 chrX 79597093 79597689 -83002241 + MER50 LTR ERV1 113 711 -23 200 237 0 0 chrX 79597867 79597905 -83002025 + polypurine Low_complexity Low_complexity 4 41 0 304 261 112 0 chrX 79598868 79599002 -83000928 - L1ME4a LINE L1 -63 6058 5910 1067 111 44 0 chrX 79599019 79599200 -83000730 + L1MA8 LINE L1 6096 6284 -7 256 250 36 0 chrX 79599303 79599359 -83000571 - L2 LINE L2 -6 3307 3250 373 263 97 0 chrX 79599374 79599488 -83000442 - MIR SINE MIR -33 229 105 236 309 11 32 chrX 79599655 79599749 -83000181 - MIR SINE MIR -165 97 6 264 250 23 11 chrX 79599776 79599864 -83000066 - L1ME4a LINE L1 -345 5776 5688 407 231 41 50 chrX 79601361 79601482 -82998448 + MIR SINE MIR 65 184 -78 22 0 0 0 chrX 79601536 79601558 -82998372 + AT_rich Low_complexity Low_complexity 1 22 0 523 118 0 18 chrX 79601601 79601711 -82998219 + (TA)n Simple_repeat Simple_repeat 2 109 0 183 80 0 60 chrX 79601738 79601788 -82998142 + (TA)n Simple_repeat Simple_repeat 2 48 0 1625 132 27 7 chrX 79602022 79602317 -82997613 + L1MA7 LINE L1 5989 6289 -2 209 301 52 78 chrX 79602349 79602542 -82997388 + L2 LINE L2 2871 3058 -214 344 270 131 29 chrX 79602618 79602755 -82997175 + MER5A DNA MER1_type 37 187 -2 373 275 108 17 chrX 79602760 79602880 -82997050 + L2 LINE L2 3095 3225 -47 5828 138 5 13 chrX 79602950 79603968 -82995962 - L1PA15 LINE L1 0 6165 5155 34 55 0 0 chrX 79604298 79604353 -82995577 + AT_rich Low_complexity Low_complexity 1 55 0 863 269 71 13 chrX 79604589 79604827 -82995103 + MIR SINE MIR 5 256 -6 2778 182 16 85 chrX 79604879 79605488 -82994442 - MER70B LTR ERVL 0 578 12 181 267 44 0 chrX 79605500 79605545 -82994385 - L2 LINE L2 -40 3232 3186 252 0 0 0 chrX 79605823 79605851 -82994079 + (TG)n Simple_repeat Simple_repeat 2 29 0 29 0 0 0 chrX 79606033 79606062 -82993868 + AT_rich Low_complexity Low_complexity 1 29 0 239 260 13 26 chrX 79606513 79606590 -82993340 + L2 LINE L2 2593 2668 -646 638 244 161 16 chrX 79606652 79606845 -82993085 - MIR SINE MIR -33 229 9 302 282 68 132 chrX 79607423 79607689 -82992241 + MIR SINE MIR 14 262 0 234 380 19 19 chrX 79607709 79607817 -82992113 + MIR SINE MIR 37 144 -64 38755 81 7 6 chrX 79607957 79614087 -82985843 - L1PA6 LINE L1 -8 6146 11 412 114 0 25 chrX 79614449 79614528 -82985402 + (TG)n Simple_repeat Simple_repeat 2 78 0 607 376 57 41 chrX 79614702 79615277 -82984653 - L2 LINE L2 -3 3269 2691 2702 86 24 0 chrX 79615277 79615651 -82984279 + L1PA11 LINE L1 5792 6174 0 27 49 0 0 chrX 79615797 79615838 -82984092 + AT_rich Low_complexity Low_complexity 1 41 0 1715 158 3 31 chrX 79615892 79616183 -82983747 - AluJb SINE Alu -29 283 1 899 352 69 36 chrX 79616219 79617020 -82982910 - L2 LINE L2 -676 2638 1812 307 356 14 54 chrX 79617282 79617577 -82982353 - L2 LINE L2 -1635 1679 1397 572 259 38 5 chrX 79617683 79617868 -82982062 + L2 LINE L2 2469 2659 -655 3611 152 75 1 chrX 79617869 79618760 -82981170 - L1MCb LINE L1 -4849 1196 659 431 265 15 8 chrX 79618818 79618950 -82980980 - L1MCb LINE L1 -5765 280 148 1017 234 82 16 chrX 79618957 79619260 -82980670 - L2 LINE L2 -1441 1873 1551 206 178 22 0 chrX 79619260 79619305 -82980625 + (TTA)n Simple_repeat Simple_repeat 2 47 0 200 286 63 0 chrX 79619527 79619590 -82980340 - MIR SINE MIR 0 262 196 184 268 14 14 chrX 79619615 79619686 -82980244 + MIR SINE MIR 135 205 -57 * 452 247 220 27 chrX 79619684 79619834 -82980096 - MIR SINE MIR -68 194 16 734 204 91 11 chrX 79620154 79620330 -82979600 - L1ME3A LINE L1 -8 6162 5973 241 103 0 0 chrX 79620378 79620417 -82979513 + MADE1 DNA Mariner 42 80 0 876 191 106 16 chrX 79620591 79620779 -82979151 - MIR SINE MIR 0 262 58 1394 204 91 42 chrX 79621150 79621563 -82978367 - MLT1L LTR MaLR -7 608 73 222 246 62 15 chrX 79621867 79621932 -82977998 + L3 LINE CR1 1331 1398 -179 549 76 13 0 chrX 79622267 79622346 -82977584 - MADE1 DNA Mariner 0 80 1 2551 57 0 0 chrX 79622418 79622718 -82977212 + AluY SINE Alu 1 300 -11 217 200 50 67 chrX 79623150 79623270 -82976660 + CT-rich Low_complexity Low_complexity 4 121 0 1454 190 3 35 chrX 79625050 79625372 -82974558 + AluJb SINE Alu 3 315 0 507 250 23 8 chrX 79625424 79625556 -82974374 + MER94 DNA DNA 1 134 0 375 316 71 13 chrX 79625585 79625740 -82974190 + L2 LINE L2 3149 3312 -1 181 359 16 0 chrX 79625980 79626044 -82973886 - MIR3 SINE MIR -3 205 141 1793 130 38 63 chrX 79626071 79626200 -82973730 + MER44D DNA MER2_type 2 133 -2358 2327 76 0 7 chrX 79626200 79626501 -82973429 - AluY SINE Alu -12 299 1 1793 130 38 63 chrX 79626501 79626579 -82973351 + MER44D DNA MER2_type 133 211 -2280 1371 121 9 0 chrX 79626579 79626794 -82973136 + L1MA3 LINE L1 6089 6305 0 1793 130 38 63 chrX 79626794 79626932 -82972998 + MER44D DNA MER2_type 211 609 0 44050 40 2 1 chrX 79627141 79633283 -82966647 + L1PA3 LINE L1 9 6154 -1 30 0 0 0 chrX 79633283 79633313 -82966617 + AT_rich Low_complexity Low_complexity 1 30 0 265 265 0 69 chrX 79634673 79634775 -82965155 + MIR SINE MIR 90 184 -78 518 222 257 12 chrX 79634790 79634961 -82964969 - MIR SINE MIR -12 250 38 24 0 0 0 chrX 79635468 79635492 -82964438 + AT_rich Low_complexity Low_complexity 1 24 0 222 338 84 52 chrX 79635638 79635792 -82964138 + MIR SINE MIR 48 206 -56 423 332 42 10 chrX 79636003 79636196 -82963734 + MIR SINE MIR 7 205 -57 504 0 0 0 chrX 79637117 79637173 -82962757 + (TA)n Simple_repeat Simple_repeat 1 56 0 1644 146 0 38 chrX 79639631 79639892 -82960038 + MER1B DNA MER1_type 129 339 0 7808 193 26 8 chrX 79639992 79642662 -82957268 + L1PA13 LINE L1 1110 3840 -2957 8127 162 50 7 chrX 79642663 79643478 -82956452 - L1PBa LINE L1 -1815 5047 4268 300 27 0 0 chrX 79643478 79643515 -82956415 + (TTG)n Simple_repeat Simple_repeat 1 37 0 8127 162 50 7 chrX 79643515 79645027 -82954903 - L1PBa LINE L1 -2594 4268 2268 2322 97 3 0 chrX 79645027 79645327 -82954603 - AluSp SINE Alu -12 301 1 8127 162 50 7 chrX 79645327 79646066 -82953864 - L1PBa LINE L1 -4594 2268 1562 3719 163 8 6 chrX 79646069 79647229 -82952701 + L1PB1 LINE L1 4630 5791 -360 402 21 0 0 chrX 79647239 79647286 -82952644 + (TG)n Simple_repeat Simple_repeat 2 48 0 2262 130 3 21 chrX 79647329 79647706 -82952224 + L1PB1 LINE L1 5777 6146 -5 11022 170 7 12 chrX 79647726 79650593 -82949337 + L1PA13 LINE L1 3926 6807 -7 443 313 37 47 chrX 79652575 79652789 -82947141 - L2 LINE L2 -3 3310 3099 22 0 0 0 chrX 79652974 79652996 -82946934 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 79653320 79653348 -82946582 + AT_rich Low_complexity Low_complexity 1 28 0 3921 43 0 6 chrX 79654074 79654564 -82945366 - L1PA5 LINE L1 0 6154 5668 411 279 119 65 chrX 79654575 79654629 -82945301 + L1MD3 LINE L1 4408 4458 -1688 2228 125 0 0 chrX 79654629 79654925 -82945005 - AluSq SINE Alu -16 297 2 411 279 119 65 chrX 79654925 79655282 -82944648 + L1MD3 LINE L1 4458 4841 -1305 770 213 47 6 chrX 79655391 79655560 -82944370 + MER5A DNA MER1_type 2 177 -12 1862 253 100 29 chrX 79655560 79655845 -82944085 + L1MD3 LINE L1 4954 4768 -1378 1389 275 104 13 chrX 79655845 79656317 -82943613 - LTR33 LTR ERVL -2 519 5 1862 253 100 29 chrX 79656317 79656990 -82942940 + L1MD3 LINE L1 4767 5391 -755 2265 204 50 15 chrX 79657166 79657710 -82942220 + L1MD3 LINE L1 7432 7994 -1 565 292 77 71 chrX 79658002 79658338 -82941592 + L3 LINE CR1 1237 1574 -3 615 214 15 8 chrX 79658721 79658852 -82941078 - FLAM_A SINE Alu -1 132 1 270 54 71 0 chrX 79658917 79658973 -82940957 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 1036 164 0 46 chrX 79659292 79659511 -82940419 + MER3 DNA MER1_type 1 209 0 188 329 71 0 chrX 79659870 79659940 -82939990 - L2 LINE L2 -5 3308 3234 409 306 60 47 chrX 79659946 79660196 -82939734 - MIR SINE MIR -3 259 9 268 253 56 124 chrX 79660236 79660414 -82939516 - MIR SINE MIR 0 262 97 1606 159 98 0 chrX 79660606 79660902 -82939028 - MER7A DNA MER2_type -22 324 2 222 118 0 0 chrX 79661401 79661435 -82938495 + (TG)n Simple_repeat Simple_repeat 1 34 0 274 127 55 0 chrX 79661482 79661537 -82938393 + LTR66 LTR ERVL 394 451 -159 6207 147 26 7 chrX 79662265 79663926 -82936004 - L1MA5A LINE L1 -6 7710 6018 3302 136 21 2 chrX 79663958 79664519 -82935411 - L1MA3 LINE L1 -8 6297 5726 15863 153 31 12 chrX 79664540 79667221 -82932709 - L1MA5A LINE L1 -4826 2739 6 4617 171 66 17 chrX 79667215 79668226 -82931704 - L1MA3 LINE L1 -1532 4614 3554 * 996 165 0 19 chrX 79668804 79668962 -82930968 + FRAM SINE Alu 2 156 -10 617 217 0 8 chrX 79669484 79669613 -82930317 - FLAM_A SINE Alu -1 132 5 2672 48 0 6 chrX 79671092 79671427 -82928503 + L1PA5 LINE L1 5814 6146 -8 787 110 7 0 chrX 79671546 79671682 -82928248 - L1MA5 LINE L1 0 6300 6164 388 75 0 0 chrX 79671712 79671765 -82928165 - L1MA6 LINE L1 -119 6181 6129 2946 110 11 16 chrX 79671765 79672201 -82927729 - Tigger2a DNA MER2_type 0 434 1 555 358 31 78 chrX 79672247 79673123 -82926807 + L2 LINE L2 2401 3241 -31 244 360 171 36 chrX 79673425 79673758 -82926172 - L2 LINE L2 -2 3270 2893 4586 115 5 0 chrX 79673820 79674490 -82925440 - L1PA14 LINE L1 -2 6159 5487 478 360 118 43 chrX 79674556 79674892 -82925038 - L2 LINE L2 -553 2761 2369 3396 69 0 0 chrX 79674892 79675324 -82924606 + L1PA7 LINE L1 5708 6139 -15 478 360 118 43 chrX 79675324 79675521 -82924409 - L2 LINE L2 -945 2369 2188 199 359 0 0 chrX 79675517 79675570 -82924360 + L2 LINE L2 2227 2279 -1035 * 1972 94 64 0 chrX 79675834 79676138 -82923792 + AluSq SINE Alu 1 321 0 3830 184 18 62 chrX 79676402 79677505 -82922425 + L1M4 LINE L1 4297 5351 -795 22 0 0 0 chrX 79677507 79677529 -82922401 + AT_rich Low_complexity Low_complexity 1 22 0 1449 98 4 37 chrX 79677529 79677774 -82922156 - L1MA3 LINE L1 0 6305 6069 243 0 0 0 chrX 79677774 79677801 -82922129 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3458 32 0 0 chrX 79677804 79678210 -82921720 - L1PA3 LINE L1 -4 6151 5746 4331 131 15 3 chrX 79678211 79678898 -82921032 - L1MA3 LINE L1 -224 6081 5387 2506 106 5 13 chrX 79678909 79679148 -82920782 - L1MA2 LINE L1 0 6304 6068 1990 98 4 11 chrX 79679148 79679422 -82920508 - AluSc SINE Alu -17 292 21 2506 106 5 13 chrX 79679422 79679579 -82920351 - L1MA2 LINE L1 -236 6068 5911 5170 102 13 32 chrX 79679587 79680411 -82919519 + L1MA3 LINE L1 5497 6305 0 181 294 98 0 chrX 79680577 79680628 -82919302 + L2 LINE L2 3238 3293 -20 409 314 0 33 chrX 79680668 79680821 -82919109 - MIR SINE MIR -11 251 104 32 43 0 0 chrX 79681133 79681179 -82918751 + AT_rich Low_complexity Low_complexity 1 46 0 878 152 36 69 chrX 79681732 79681765 -82918165 - L1P LINE L1 -856 5290 5257 5230 83 22 1 chrX 79681765 79682498 -82917432 - L1PA14 LINE L1 -2 6159 5412 878 152 36 69 chrX 79682498 79682667 -82917263 - L1P LINE L1 -889 5257 5095 8635 149 4 28 chrX 79682690 79684712 -82915218 - L1PA12 LINE L1 -5338 2243 1 3717 316 100 18 chrX 79685552 79687494 -82912436 - L2 LINE L2 0 3313 1213 7845 52 25 0 chrX 79688211 79689988 -82909942 - L1PA6 LINE L1 -7 6147 4345 2179 68 3 0 chrX 79689992 79690300 -82909630 - L1PA6 LINE L1 -2849 3297 2989 403 250 0 0 chrX 79690300 79690392 -82909538 - MER94 DNA DNA -42 92 1 234 0 0 0 chrX 79690701 79690727 -82909203 + (A)n Simple_repeat Simple_repeat 1 26 0 202 204 41 0 chrX 79691523 79691572 -82908358 + (TA)n Simple_repeat Simple_repeat 1 51 0 203 146 24 0 chrX 79692056 79692097 -82907833 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 28 29 0 0 chrX 79692949 79692984 -82906946 + AT_rich Low_complexity Low_complexity 1 35 0 491 153 24 0 chrX 79694315 79694400 -82905530 - MLT1E LTR MaLR 0 593 507 2250 161 72 2 chrX 79694400 79694804 -82905126 - MSTB1 LTR MaLR 0 432 1 7207 182 143 3 chrX 79694804 79696252 -82903678 - MSTB1-int LTR MaLR 0 1651 1 2236 152 82 5 chrX 79696252 79696653 -82903277 - MSTB1 LTR MaLR 0 432 1 1294 278 46 55 chrX 79696656 79697110 -82902820 - MLT1E LTR MaLR -85 508 59 325 297 81 31 chrX 79697317 79697539 -82902391 - L2 LINE L2 -1 3312 3080 242 307 168 40 chrX 79697958 79698160 -82901770 + L2 LINE L2 1876 2103 -1211 1753 139 10 16 chrX 79698289 79698592 -82901338 + L1PA15 LINE L1 5864 6164 -1 231 146 0 0 chrX 79700058 79700099 -82899831 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 3937 203 23 26 chrX 79700129 79700943 -82898987 + L1M1 LINE L1 20 831 -6734 387 0 0 0 chrX 79700948 79700991 -82898939 + (A)n Simple_repeat Simple_repeat 1 43 0 207 269 0 0 chrX 79701094 79701146 -82898784 + GA-rich Low_complexity Low_complexity 1 52 0 530 346 10 40 chrX 79701164 79701467 -82898463 + L2 LINE L2 2513 2806 -508 673 261 84 15 chrX 79701585 79701788 -82898142 - MIR SINE MIR -20 242 26 912 255 56 16 chrX 79702403 79702654 -82897276 + MIR SINE MIR 1 261 -1 331 244 26 0 chrX 79703770 79703848 -82896082 + MIR3 SINE MIR 121 200 -8 246 288 51 0 chrX 79704285 79704344 -82895586 - MIR SINE MIR -186 76 15 1181 228 56 8 chrX 79704345 79704613 -82895317 - MLT1C LTR MaLR 0 467 187 369 200 127 64 chrX 79704643 79704753 -82895177 - MLT1C LTR MaLR -386 119 3 235 215 13 63 chrX 79704918 79704997 -82894933 + MLT1L LTR MaLR 209 283 -332 3086 192 43 17 chrX 79705045 79705747 -82894183 + L1MD2 LINE L1 5624 6343 -16 204 376 31 6 chrX 79705858 79706020 -82893910 - L2 LINE L2 -238 3034 2869 3728 261 70 61 chrX 79706243 79707644 -82892286 + L2 LINE L2 21 1433 -1881 2221 203 85 34 chrX 79707720 79708391 -82891539 + L1MC5 LINE L1 7179 7883 -78 3237 235 161 11 chrX 79708456 79709406 -82890524 + L2 LINE L2 1422 2514 -800 2376 186 19 19 chrX 79709451 79709978 -82889952 + L1MB1 LINE L1 3472 3998 -2148 * 5298 168 34 21 chrX 79709969 79711667 -82888263 + L1MB1 LINE L1 4215 5951 -238 * 22416 159 37 11 chrX 79711664 79719172 -82880758 + L1MA3 LINE L1 10 7722 -2 1180 159 13 0 chrX 79719187 79719454 -82880476 + L1MB1 LINE L1 5935 6204 0 443 178 0 0 chrX 79719454 79719544 -82880386 + L1MC/D LINE L1 1636 1725 -4815 * 2451 230 94 33 chrX 79719538 79720628 -82879302 + L1MC/D LINE L1 4742 5903 -733 561 254 37 77 chrX 79720694 79720966 -82878964 - L1MC5 LINE L1 -737 7224 6964 1208 23 0 0 chrX 79721095 79721227 -82878703 - AluY SINE Alu -179 132 1 469 234 70 32 chrX 79721227 79721385 -82878545 - L1MC5 LINE L1 -1094 6867 6704 1398 126 14 5 chrX 79721529 79721744 -82878186 + L1PA16 LINE L1 5941 6157 -9 193 256 144 72 chrX 79722022 79722217 -82877713 - L2 LINE L2 -576 2738 2530 295 391 69 0 chrX 79722248 79722450 -82877480 - L2 LINE L2 -653 2661 2446 1057 207 24 0 chrX 79722679 79722887 -82877043 + MER58B DNA MER1_type 1 213 -128 201 179 0 26 chrX 79722933 79722972 -82876958 + (CA)n Simple_repeat Simple_repeat 2 39 0 553 124 0 203 chrX 79723168 79723321 -82876609 + MER58B DNA MER1_type 220 341 0 196 282 113 0 chrX 79723321 79723392 -82876538 - MIR SINE MIR -24 238 160 401 81 16 0 chrX 79724416 79724478 -82875452 + (CGG)n Simple_repeat Simple_repeat 2 64 0 24 0 0 0 chrX 79728465 79728489 -82871441 + AT_rich Low_complexity Low_complexity 1 24 0 2274 93 0 19 chrX 79728491 79728801 -82871129 + AluSc SINE Alu 1 304 -5 400 283 181 0 chrX 79729190 79729328 -82870602 + MIR3 SINE MIR 35 197 -11 2130 141 45 28 chrX 79729997 79730424 -82869506 - L1MB7 LINE L1 -16 6168 5735 24 77 0 0 chrX 79731895 79731947 -82867983 + AT_rich Low_complexity Low_complexity 1 52 0 541 238 161 21 chrX 79732162 79732355 -82867575 + MIR SINE MIR 32 251 -11 21 36 0 0 chrX 79733661 79733689 -82866241 + AT_rich Low_complexity Low_complexity 1 28 0 3242 202 61 74 chrX 79733742 79734063 -82865867 - L1MD2 LINE L1 -22 6337 6013 357 43 0 0 chrX 79734063 79734110 -82865820 + (CA)n Simple_repeat Simple_repeat 1 47 0 3242 202 61 74 chrX 79734110 79734543 -82865387 - L1MD2 LINE L1 -346 6013 5595 2007 52 4 48 chrX 79734543 79734626 -82865304 + AluY SINE Alu 53 138 -173 2827 6 6 9 chrX 79734626 79734945 -82864985 + AluYb8 SINE Alu 1 318 0 2007 52 4 48 chrX 79734945 79735132 -82864798 + AluY SINE Alu 138 311 0 3242 202 61 74 chrX 79735132 79735298 -82864632 - L1MD2 LINE L1 -764 5595 5428 21 36 0 0 chrX 79736379 79736407 -82863523 + AT_rich Low_complexity Low_complexity 1 28 0 7418 184 14 11 chrX 79737547 79738168 -82861762 - L1PA16 LINE L1 -86 6080 5462 4747 81 30 3 chrX 79738168 79738831 -82861099 + L1PB1 LINE L1 5465 6149 -2 7418 184 14 11 chrX 79738831 79738867 -82861063 - L1PA16 LINE L1 -704 5462 5428 249 33 0 0 chrX 79738867 79738897 -82861033 + (TAA)n Simple_repeat Simple_repeat 2 31 0 7418 184 14 11 chrX 79738897 79740619 -82859311 - L1PA16 LINE L1 -738 5428 3727 2749 147 48 22 chrX 79740728 79741067 -82858863 - L1MB7 LINE L1 -1 6183 5823 2419 135 34 56 chrX 79741067 79741511 -82858419 - Tigger2a DNA MER2_type 0 434 1 2749 147 48 22 chrX 79741511 79741709 -82858221 - L1MB7 LINE L1 -361 5823 5632 24 0 0 0 chrX 79742685 79742709 -82857221 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrX 79744180 79744201 -82855729 + AT_rich Low_complexity Low_complexity 1 21 0 872 179 26 42 chrX 79744201 79744391 -82855539 - L1PB4 LINE L1 -3 6153 5967 901 245 38 0 chrX 79745001 79745213 -82854717 + MIR SINE MIR 13 232 -30 443 346 79 14 chrX 79745845 79746059 -82853871 - MIR SINE MIR -15 247 20 36 23 0 0 chrX 79747085 79747128 -82852802 + AT_rich Low_complexity Low_complexity 1 43 0 33 25 0 0 chrX 79747436 79747476 -82852454 + AT_rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chrX 79748569 79748592 -82851338 + (T)n Simple_repeat Simple_repeat 1 23 0 1788 160 23 19 chrX 79749663 79749970 -82849960 - AluJo SINE Alu 0 312 5 207 167 0 0 chrX 79750129 79750165 -82849765 + GA-rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chrX 79754138 79754159 -82845771 + AT_rich Low_complexity Low_complexity 1 21 0 411 254 191 8 chrX 79754199 79754325 -82845605 - MER5A DNA MER1_type 0 189 41 369 310 46 11 chrX 79754414 79754588 -82845342 - L2 LINE L2 -253 3060 2881 624 84 0 0 chrX 79754597 79754680 -82845250 + AluSp/q SINE Alu 218 300 -13 182 291 197 24 chrX 79754702 79754829 -82845101 - L2 LINE L2 -552 2762 2614 517 195 44 9 chrX 79755258 79755371 -82844559 - L1MC5 LINE L1 -61 7900 7784 2791 96 46 7 chrX 79757596 79758034 -82841896 - L1MA2 LINE L1 -4 6300 5846 816 246 22 22 chrX 79760691 79760919 -82839011 - L1ME3A LINE L1 -9 6161 5934 1098 209 19 0 chrX 79761160 79761375 -82838555 - MER20 DNA MER1_type 0 219 1 1466 175 108 22 chrX 79761390 79761705 -82838225 - MER2 DNA MER2_type -1 343 2 346 301 212 16 chrX 79761746 79761939 -82837991 + L3 LINE CR1 1325 1555 -22 30 0 0 0 chrX 79762020 79762050 -82837880 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrX 79762282 79762303 -82837627 + AT_rich Low_complexity Low_complexity 1 21 0 320 235 186 77 chrX 79762632 79762815 -82837115 + MARNA DNA Mariner 185 387 -199 4582 259 63 50 chrX 79762846 79764224 -82835706 + L1MEc LINE L1 142 1546 -4669 8945 45 8 1 chrX 79764224 79766107 -82833823 + L1PA5 LINE L1 4256 6147 -7 4582 259 63 50 chrX 79766107 79767255 -82832675 + L1MEc LINE L1 1546 2678 -3537 3232 265 26 7 chrX 79767254 79768267 -82831663 + L1MEc LINE L1 2911 3942 -2273 * 1671 279 52 57 chrX 79768310 79768851 -82831079 + L1M4b LINE L1 18 711 -6148 2619 90 3 6 chrX 79768851 79769207 -82830723 + THE1A LTR MaLR 1 355 0 1671 279 52 57 chrX 79769207 79769428 -82830502 + L1M4b LINE L1 711 932 -5927 228 170 0 19 chrX 79769932 79769985 -82829945 + A-rich Low_complexity Low_complexity 3 54 0 697 253 4 55 chrX 79769987 79770244 -82829686 + L1M4b LINE L1 1205 1448 -5411 10273 164 21 14 chrX 79770261 79772999 -82826931 - L1PA16 LINE L1 -3 6163 3396 5946 100 19 6 chrX 79773003 79773987 -82825943 + L1PA13 LINE L1 5169 6163 0 2073 117 13 7 chrX 79773992 79774301 -82825629 + AluSx SINE Alu 1 311 -1 10126 259 30 35 chrX 79774344 79777973 -82821957 - L1PA12 LINE L1 -1813 4984 1395 414 318 84 15 chrX 79778206 79778481 -82821449 - L1PA13 LINE L1 -5276 1511 1271 1239 295 13 67 chrX 79778532 79778996 -82820934 - L1PA13 LINE L1 -6348 439 1 381 235 0 0 chrX 79779006 79779087 -82820843 + L1M4b LINE L1 1443 1523 -5336 626 187 0 0 chrX 79779087 79779194 -82820736 + FLAM_C SINE Alu 1 107 -36 226 146 36 36 chrX 79779197 79779252 -82820678 + L1M4b LINE L1 1519 1573 -5286 * 695 268 76 5 chrX 79779243 79779467 -82820463 + L1MB8 LINE L1 5 244 -6298 736 87 0 0 chrX 79779482 79779586 -82820344 - AluY SINE Alu -2 309 206 2669 20 0 0 chrX 79779586 79779888 -82820042 - AluY SINE Alu -9 302 1 1740 63 0 18 chrX 79779888 79780108 -82819822 - AluY SINE Alu -94 217 1 4882 231 78 33 chrX 79780141 79781918 -82818012 + L1MB8 LINE L1 281 2091 -4555 776 238 71 0 chrX 79781956 79782311 -82817619 + L1MB8 LINE L1 2472 2853 -3791 3222 186 47 2 chrX 79782326 79783167 -82816763 + L1MB8 LINE L1 5561 6439 -237 603 298 170 7 chrX 79783167 79783449 -82816481 + MLT1K LTR MaLR 258 585 -3 182 345 80 44 chrX 79784251 79784364 -82815566 - L2 LINE L2 -19 3294 3178 260 309 53 0 chrX 79784787 79784881 -82815049 - MIR SINE MIR -97 165 67 388 273 109 44 chrX 79785144 79785327 -82814603 - MIR SINE MIR -58 204 10 22 56 0 0 chrX 79785491 79785527 -82814403 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrX 79788715 79788743 -82811187 + AT_rich Low_complexity Low_complexity 1 28 0 2009 153 7 0 chrX 79788971 79789278 -82810652 - AluSx SINE Alu -3 309 1 1779 106 30 0 chrX 79789393 79789657 -82810273 + MER51A LTR ERV1 282 553 -81 2476 257 55 5 chrX 79789674 79790306 -82809624 + L1MDa LINE L1 33 872 -5668 564 143 0 0 chrX 79790374 79790451 -82809479 - 5S rRNA rRNA -29 92 16 3933 180 54 43 chrX 79790451 79791510 -82808420 + L1MDa LINE L1 1060 2129 -4411 * 12883 76 13 4 chrX 79791504 79794414 -82805516 - L1PA7 LINE L1 -1 6153 3234 374 52 0 0 chrX 79795678 79795736 -82804194 + L1MA1 LINE L1 6245 6302 0 16961 207 20 20 chrX 79797020 79797950 -82801980 - L1PA16 LINE L1 -5 6812 5883 4252 89 2 2 chrX 79797950 79798535 -82801395 + L1PA13 LINE L1 5572 6156 -7 16961 207 20 20 chrX 79798535 79800559 -82799371 - L1PA16 LINE L1 -934 5883 3860 21220 34 0 0 chrX 79800559 79803906 -82796024 + L1PA3 LINE L1 2806 6152 -3 16961 207 20 20 chrX 79803906 79807620 -82792310 - L1PA16 LINE L1 -2957 3860 135 2328 48 0 0 chrX 79808469 79808793 -82791137 - AluY SINE Alu 0 335 12 438 186 298 0 chrX 79808924 79809048 -82790882 - MER5A DNA MER1_type -1 188 28 187 315 14 0 chrX 79809051 79809124 -82790806 - MIR SINE MIR -58 204 131 201 108 0 0 chrX 79809133 79809170 -82790760 + (A)n Simple_repeat Simple_repeat 1 37 0 275 247 364 7 chrX 79809386 79809540 -82790390 + MIR SINE MIR 52 260 -2 230 293 16 117 chrX 79809577 79809765 -82790165 - L2 LINE L2 -1987 1327 1159 294 250 125 36 chrX 79809783 79809895 -82790035 - L2 LINE L2 0 3313 3192 21 0 0 0 chrX 79809931 79809952 -82789978 + AT_rich Low_complexity Low_complexity 1 21 0 241 321 111 19 chrX 79809959 79810121 -82789809 - L2 LINE L2 -2170 1144 968 34 0 0 0 chrX 79810256 79810290 -82789640 + AT_rich Low_complexity Low_complexity 1 34 0 40 101 0 0 chrX 79810515 79810653 -82789277 + AT_rich Low_complexity Low_complexity 1 138 0 1266 44 0 0 chrX 79810973 79811131 -82788799 + L1PA5 LINE L1 5997 6154 0 34 0 0 0 chrX 79811718 79811752 -82788178 + AT_rich Low_complexity Low_complexity 1 34 0 3464 147 5 31 chrX 79811752 79812400 -82787530 - L1MA5 LINE L1 -8 6292 5662 233 255 31 0 chrX 79813279 79813377 -82786553 + (TA)n Simple_repeat Simple_repeat 1 101 0 290 379 46 6 chrX 79813401 79813575 -82786355 + L2 LINE L2 2866 3046 -226 23 33 0 0 chrX 79813622 79813652 -82786278 + AT_rich Low_complexity Low_complexity 1 30 0 3235 165 23 16 chrX 79816007 79817526 -82782404 - L1MA3 LINE L1 0 7724 6146 1877 156 47 47 chrX 79817521 79817881 -82782049 - L1MA3 LINE L1 -7190 375 16 * 334 302 48 16 chrX 79818077 79818203 -82781727 + MIR SINE MIR 67 196 -66 295 301 89 24 chrX 79818311 79818434 -82781496 + L2 LINE L2 3178 3308 -5 224 328 216 19 chrX 79819021 79819341 -82780589 - L2 LINE L2 -784 2530 2148 2148 127 49 26 chrX 79819343 79819690 -82780240 - THE1B LTR MaLR -9 355 1 220 326 188 26 chrX 79819691 79820068 -82779862 - L2 LINE L2 -1165 2149 1712 377 201 316 43 chrX 79820187 79820326 -82779604 + MER5A DNA MER1_type 11 187 -2 1130 189 62 136 chrX 79821160 79821711 -82778219 + HAL1 LINE L1 1993 2502 -5 29 0 0 0 chrX 79822531 79822560 -82777370 + AT_rich Low_complexity Low_complexity 1 29 0 504 321 46 38 chrX 79822728 79822965 -82776965 - MIR SINE MIR -3 259 21 1200 51 6 6 chrX 79823340 79823497 -82776433 + L1PA7 LINE L1 5992 6148 -6 266 278 85 39 chrX 79823924 79824055 -82775875 - MIR SINE MIR -66 142 21 566 347 0 0 chrX 79824169 79824342 -82775588 + MIR SINE MIR 26 198 -64 212 336 40 84 chrX 79824489 79824715 -82775215 + L2 LINE L2 2855 3070 -202 384 213 0 0 chrX 79824854 79824934 -82774996 + MER116 DNA Mariner 1 80 0 656 186 0 8 chrX 79825098 79825216 -82774714 - FLAM_C SINE Alu -15 118 2 26 0 0 0 chrX 79826727 79826753 -82773177 + AT_rich Low_complexity Low_complexity 1 26 0 471 307 118 24 chrX 79826869 79827081 -82772849 + MIR SINE MIR 30 261 -1 458 268 16 63 chrX 79827120 79827247 -82772683 - MIR3 SINE MIR -45 163 43 22 56 0 0 chrX 79827950 79827986 -82771944 + AT_rich Low_complexity Low_complexity 1 36 0 1763 166 82 75 chrX 79829703 79830167 -82769763 + MLT1C LTR MaLR 1 467 0 5656 20 1 0 chrX 79830333 79830983 -82768947 - L1PA3 LINE L1 0 6155 5505 1348 18 6 0 chrX 79830983 79831150 -82768780 + L1PA3 LINE L1 5337 5504 -651 251 309 168 0 chrX 79831351 79831467 -82768463 + MIR SINE MIR 24 154 -62 587 196 155 0 chrX 79833150 79833298 -82766632 + MER58C DNA MER1_type 45 215 0 197 376 0 11 chrX 79833946 79834039 -82765891 - L2 LINE L2 -982 2332 2241 26 30 0 0 chrX 79834512 79834545 -82765385 + AT_rich Low_complexity Low_complexity 1 33 0 9644 40 3 1 chrX 79834817 79836769 -82763161 + L1PA5 LINE L1 4201 6154 0 786 310 190 20 chrX 79837511 79838389 -82761541 + L2 LINE L2 1518 2544 -770 194 0 39 0 chrX 79840427 79840453 -82759477 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 12893 175 14 12 chrX 79840457 79840823 -82759107 - L1PA14 LINE L1 -4 7595 7231 357 82 0 0 chrX 79840823 79840872 -82759058 + (TA)n Simple_repeat Simple_repeat 1 49 0 12893 175 14 12 chrX 79840872 79842255 -82757675 - L1PA14 LINE L1 -368 7231 5853 402 21 0 0 chrX 79842255 79842302 -82757628 + (TG)n Simple_repeat Simple_repeat 1 47 0 12893 175 14 12 chrX 79842302 79846253 -82753677 - L1PA14 LINE L1 -1746 5853 1870 263 279 52 15 chrX 79846275 79846411 -82753519 + L1ME4a LINE L1 5257 5397 -2411 414 248 111 0 chrX 79846513 79846666 -82753264 + L1ME4a LINE L1 5757 5926 -195 500 214 35 35 chrX 79846670 79846815 -82753115 + L1ME4a LINE L1 5972 6116 -5 259 341 178 0 chrX 79846996 79847125 -82752805 + L2 LINE L2 3121 3272 0 910 109 0 22 chrX 79848434 79848572 -82751358 - L1PB4 LINE L1 -1 6155 6021 726 139 9 0 chrX 79848604 79848719 -82751211 + L1MA1 LINE L1 6187 6302 0 432 297 165 23 chrX 79849898 79850164 -82749766 - L1MC/D LINE L1 -1984 5824 5521 228 318 85 31 chrX 79850815 79850944 -82748986 + L3b LINE CR1 1330 1465 -118 245 230 104 74 chrX 79851114 79851249 -82748681 - L3b LINE CR1 -114 1469 1331 480 259 35 112 chrX 79851356 79851553 -82748377 + MIR3 SINE MIR 16 197 -11 635 291 103 13 chrX 79851650 79851884 -82748046 - MIR SINE MIR 0 262 8 2460 74 0 0 chrX 79852362 79852673 -82747257 + AluY SINE Alu 1 311 0 1271 96 0 0 chrX 79852844 79853021 -82746909 + L1PA7 LINE L1 5963 6139 -15 236 81 48 16 chrX 79853021 79853083 -82746847 + (TA)n Simple_repeat Simple_repeat 1 64 0 301 135 19 0 chrX 79853083 79853135 -82746795 - L1PA7 LINE L1 -15 6139 6087 313 295 33 46 chrX 79853518 79853655 -82746275 + MIR SINE MIR 20 154 -71 217 286 118 25 chrX 79854258 79854377 -82745553 - L2 LINE L2 -467 2847 2718 23 54 0 0 chrX 79855526 79855563 -82744367 + AT_rich Low_complexity Low_complexity 1 37 0 219 274 0 0 chrX 79856378 79856429 -82743501 + L2 LINE L2 3261 3311 -2 24 0 0 0 chrX 79856433 79856457 -82743473 + AT_rich Low_complexity Low_complexity 1 24 0 229 49 0 49 chrX 79857233 79857274 -82742656 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 216 135 0 0 chrX 79859830 79859867 -82740063 + (CAGG)n Simple_repeat Simple_repeat 2 38 0 510 320 107 31 chrX 79861039 79861264 -82738666 - MIR SINE MIR -17 245 4 228 35 0 0 chrX 79861743 79861772 -82738158 + (CA)n Simple_repeat Simple_repeat 2 30 0 4055 184 72 16 chrX 79862850 79863667 -82736263 - MER21B LTR ERV1 0 863 1 24 53 0 0 chrX 79863888 79863926 -82736004 + AT_rich Low_complexity Low_complexity 1 38 0 303 240 40 87 chrX 79864858 79865008 -82734922 + MER103 DNA DNA 8 150 -16 773 221 93 0 chrX 79865196 79865368 -82734562 + MER5A DNA MER1_type 2 189 0 444 348 82 9 chrX 79865659 79865892 -82734038 + MIR SINE MIR 1 250 -12 1033 214 92 74 chrX 79866298 79866746 -82733184 + L1M4 LINE L1 3115 3570 -2576 1372 148 106 4 chrX 79866772 79867008 -82732922 - L1PB4 LINE L1 -17 6139 5880 13110 185 45 16 chrX 79867010 79869802 -82730128 + L1PA13 LINE L1 2649 5505 -658 967 39 87 0 chrX 79869802 79869929 -82730001 - MER85 DNA T2_type -1 138 1 13110 185 45 16 chrX 79869929 79870597 -82729333 + L1PA13 LINE L1 5505 6152 -11 23 0 0 0 chrX 79870645 79870668 -82729262 + AT_rich Low_complexity Low_complexity 1 23 0 2937 153 10 0 chrX 79870668 79871164 -82728766 + L1MA4 LINE L1 5753 6253 -47 659 297 96 26 chrX 79871200 79871785 -82728145 + L1MEc LINE L1 1012 1637 -4759 715 275 153 78 chrX 79871794 79872194 -82727736 - MLT1G LTR MaLR -4 538 109 2141 164 59 0 chrX 79872204 79872577 -82727353 + MER57A LTR ERV1 9 403 0 513 248 29 22 chrX 79872578 79872715 -82727215 - MLT1G LTR MaLR -452 143 6 23 0 0 0 chrX 79872884 79872907 -82727023 + AT_rich Low_complexity Low_complexity 1 23 0 867 285 68 34 chrX 79873344 79873664 -82726266 + L1MEc LINE L1 2370 2678 -3537 1716 158 158 30 chrX 79873664 79874069 -82725861 - MSTB2 LTR MaLR 0 457 1 867 285 68 34 chrX 79874069 79874426 -82725504 + L1MEc LINE L1 2678 3070 -3145 2528 232 59 74 chrX 79874446 79874977 -82724953 - L1ME1 LINE L1 -8 6158 5621 2291 92 0 3 chrX 79874977 79875282 -82724648 - AluSq SINE Alu -9 304 1 2528 232 59 74 chrX 79875282 79875707 -82724223 - L1ME1 LINE L1 -545 5621 5191 2448 84 0 0 chrX 79875707 79876015 -82723915 + AluSq SINE Alu 3 310 -3 2528 232 59 74 chrX 79876015 79876529 -82723401 - L1ME1 LINE L1 -975 5191 4718 399 176 251 37 chrX 79876531 79876718 -82723212 + L1MEc LINE L1 3063 3289 -2926 31 26 0 0 chrX 79876828 79876866 -82723064 + AT_rich Low_complexity Low_complexity 1 38 0 1777 98 34 37 chrX 79876929 79877124 -82722806 - L1MA1 LINE L1 0 7721 7526 1382 148 152 16 chrX 79877124 79877380 -82722550 + AluSg1 SINE Alu 2 292 -17 1777 98 34 37 chrX 79877380 79877481 -82722449 - L1MA1 LINE L1 -195 7526 7426 14453 170 17 23 chrX 79877488 79878666 -82721264 - L1MA1 LINE L1 -743 6822 5638 2262 110 0 0 chrX 79878666 79878976 -82720954 + AluSx SINE Alu 2 311 -1 14453 170 17 23 chrX 79878976 79882283 -82717647 - L1MA1 LINE L1 -1927 5638 2447 16620 93 4 13 chrX 79882318 79884315 -82715615 - L1PA7 LINE L1 -5 6149 4185 2323 78 7 0 chrX 79884315 79884623 -82715307 - AluY SINE Alu -1 310 1 16620 93 4 13 chrX 79884623 79885853 -82714077 - L1PA7 LINE L1 -1969 4185 2945 10910 88 3 5 chrX 79885859 79887402 -82712528 + L1PA7 LINE L1 1405 2945 -3201 13566 174 25 10 chrX 79887408 79889814 -82710116 - L1MA1 LINE L1 -5112 2453 13 269 271 49 128 chrX 79889824 79890158 -82709772 + L1M4 LINE L1 3429 3717 -2429 1627 131 0 4 chrX 79890158 79890395 -82709535 - AluJb SINE Alu -12 300 65 269 271 49 128 chrX 79890395 79890529 -82709401 + L1M4 LINE L1 3717 3860 -2286 278 333 48 0 chrX 79890547 79890631 -82709299 + MER58A DNA MER1_type 1 88 -19 780 124 0 0 chrX 79890639 79890760 -82709170 - L1MA6 LINE L1 -4 6296 6176 3066 138 37 51 chrX 79890760 79891383 -82708547 - L1MA6 LINE L1 -76 7643 7030 14040 196 43 32 chrX 79891435 79894922 -82705008 - L1MA3 LINE L1 -10 7714 4268 6857 61 2 9 chrX 79894922 79896100 -82703830 - L1PA6 LINE L1 -12 6142 4963 14040 196 43 32 chrX 79896100 79898207 -82701723 - L1MA3 LINE L1 -3456 4268 2186 432 0 0 0 chrX 79898207 79898255 -82701675 + (TG)n Simple_repeat Simple_repeat 1 48 0 14040 196 43 32 chrX 79898255 79899959 -82699971 - L1MA3 LINE L1 -5538 2186 16 7617 187 30 22 chrX 79899963 79901899 -82698031 - L1MA6 LINE L1 -687 7032 5070 803 190 88 0 chrX 79901911 79902127 -82697803 - L1MA6 LINE L1 -3131 4434 4200 42334 39 22 1 chrX 79902134 79908162 -82691768 - L1PA3 LINE L1 0 6155 2 2992 242 25 52 chrX 79908171 79909833 -82690097 - L1MA6 LINE L1 -3352 4213 2586 212 250 0 0 chrX 79910760 79910804 -82689126 + CT-rich Low_complexity Low_complexity 4 47 0 586 58 23 0 chrX 79910955 79911042 -82688888 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 21 0 0 0 chrX 79911267 79911288 -82688642 + AT_rich Low_complexity Low_complexity 1 21 0 1182 314 39 11 chrX 79913462 79913904 -82686026 + L2 LINE L2 2188 2641 -673 2168 159 48 0 chrX 79913908 79914280 -82685650 + MLT1B LTR MaLR 1 390 0 2574 198 17 72 chrX 79914285 79914937 -82684993 - MLT1E3 LTR MaLR -8 616 1 294 366 52 22 chrX 79914939 79915073 -82684857 + L2 LINE L2 2641 2778 -536 654 299 12 0 chrX 79915218 79915385 -82684545 + L2 LINE L2 2194 2362 -952 2239 151 62 5 chrX 79915399 79915804 -82684126 + MSTA LTR MaLR 1 428 0 8424 195 21 6 chrX 79915804 79917430 -82682500 + MSTA-int LTR MaLR 1 1651 0 2129 167 54 5 chrX 79917430 79917838 -82682092 + MSTA LTR MaLR 1 428 0 367 94 0 47 chrX 79917884 79917948 -82681982 - L1PA11 LINE L1 -2 6172 6112 9699 228 24 24 chrX 79917963 79920293 -82679637 - L1PA12 LINE L1 -2870 4714 2386 192 77 0 0 chrX 79920293 79920319 -82679611 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9699 228 24 24 chrX 79920319 79921889 -82678041 - L1PA12 LINE L1 -5198 2386 1 874 309 72 34 chrX 79921907 79922494 -82677436 + L2 LINE L2 2421 2984 -329 2523 98 6 14 chrX 79922494 79922850 -82677080 - THE1A LTR MaLR 0 355 3 10931 113 16 0 chrX 79922852 79924407 -82675523 - THE1A-int LTR MaLR 0 1580 1 2610 102 3 0 chrX 79924407 79924761 -82675169 - THE1A LTR MaLR 0 355 1 874 309 72 34 chrX 79924761 79924978 -82674952 + L2 LINE L2 2983 3313 0 1720 252 57 6 chrX 79926073 79926550 -82673380 - L1ME1 LINE L1 -35 6131 5631 2504 231 80 21 chrX 79926558 79927468 -82672462 - L1M4 LINE L1 -4024 2620 1560 372 297 3 11 chrX 79927549 79927649 -82672281 - MER5B DNA MER1_type -16 170 75 912 205 58 13 chrX 79927668 79927892 -82672038 - L1MB7 LINE L1 -10 6174 5941 4121 169 20 15 chrX 79927892 79928671 -82671259 - L1MB7 LINE L1 -16 6168 5386 219 139 0 0 chrX 79929717 79929753 -82670177 + (TTCTC)n Simple_repeat Simple_repeat 1 36 0 2251 90 3 10 chrX 79930224 79930523 -82669407 + AluSg SINE Alu 1 297 -13 23 0 0 0 chrX 79930948 79930971 -82668959 + AT_rich Low_complexity Low_complexity 1 23 0 275 327 103 9 chrX 79931001 79931108 -82668822 - MIR SINE MIR -71 137 21 21 36 0 0 chrX 79931521 79931549 -82668381 + AT_rich Low_complexity Low_complexity 1 28 0 2470 169 32 76 chrX 79932011 79932579 -82667351 + MER67A LTR ERV1 1 543 0 269 241 75 12 chrX 79933376 79933481 -82666449 - L1ME4a LINE L1 -2 6104 1238 260 304 80 4 chrX 79933699 79933893 -82666037 - L1ME LINE L1 -414 5707 5493 2262 77 23 7 chrX 79933908 79934208 -82665722 + AluSg SINE Alu 1 305 -5 216 0 0 0 chrX 79935905 79935929 -82664001 + (TAG)n Simple_repeat Simple_repeat 2 25 0 1445 286 108 116 chrX 79936951 79937837 -82662093 + L3 LINE CR1 67 938 -639 180 111 0 0 chrX 79937837 79937864 -82662066 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1445 286 108 116 chrX 79937864 79938440 -82661490 + L3 LINE CR1 938 1517 -60 199 280 0 0 chrX 79938525 79938575 -82661355 + L3b LINE CR1 1534 1583 0 1049 205 10 10 chrX 79938591 79938786 -82661144 + Tigger5 DNA MER2_type 24 218 -2105 679 200 110 0 chrX 79938786 79938931 -82660999 + Tigger5 DNA MER2_type 2163 2323 0 25 0 0 0 chrX 79940036 79940061 -82659869 + AT_rich Low_complexity Low_complexity 1 25 0 1138 73 30 0 chrX 79940061 79940225 -82659705 - L1MA2 LINE L1 0 6304 6136 232 80 100 0 chrX 79940225 79940275 -82659655 + L1MA1 LINE L1 5996 6050 -252 301 318 23 23 chrX 79940820 79940949 -82658981 + L1ME4a LINE L1 5412 5540 -581 241 284 80 0 chrX 79940971 79941059 -82658871 + L1ME4a LINE L1 5974 6068 -53 3125 121 4 2 chrX 79941081 79941560 -82658370 - L1MA3 LINE L1 0 6305 5826 247 215 101 13 chrX 80141936 80142015 -82457915 + L1ME4a LINE L1 5989 6074 -47 930 82 0 0 chrX 80142964 80143086 -82456844 - AluSg/x SINE Alu -10 302 181 597 247 37 30 chrX 80143114 80143248 -82456682 - L1PA15-16 LINE L1 -6621 242 114 2053 88 6 64 chrX 80143248 80143577 -82456353 - AluSg SINE Alu 0 310 1 597 247 37 30 chrX 80143577 80143690 -82456240 - L1PA15-16 LINE L1 -6749 114 3 182 208 143 65 chrX 80144443 80144520 -82455410 + L3 LINE CR1 395 477 -1100 360 0 0 0 chrX 80144694 80144734 -82455196 + (TG)n Simple_repeat Simple_repeat 1 40 0 309 297 62 38 chrX 80145593 80145780 -82454150 + MIR SINE MIR 19 212 -50 926 184 5 22 chrX 80145964 80146187 -82453743 - L1 LINE L1 -1471 4675 4457 481 346 33 42 chrX 80146187 80146493 -82453437 + L2 LINE L2 3011 3313 0 277 157 88 29 chrX 80146566 80146719 -82453211 + (TATAA)n Simple_repeat Simple_repeat 1 161 0 311 363 8 8 chrX 80148410 80148534 -82451396 - L2 LINE L2 0 3313 3190 244 359 109 16 chrX 80148868 80148996 -82450934 + MIR3 SINE MIR 16 155 -53 1594 240 26 6 chrX 80149016 80149366 -82450564 - MSTD LTR MaLR -39 357 1 299 162 174 44 chrX 80149368 80149497 -82450433 - MER20B DNA MER1_type -2 217 54 1499 324 72 16 chrX 80149506 80150238 -82449692 + L2 LINE L2 1956 2728 -586 559 315 89 69 chrX 80150461 80150908 -82449022 + L2 LINE L2 2858 3313 0 2896 132 16 0 chrX 80151273 80151705 -82448225 - MER83 LTR ERV1 -9 439 1 326 23 23 0 chrX 80151745 80151788 -82448142 + (CA)n Simple_repeat Simple_repeat 2 45 0 426 324 50 28 chrX 80152134 80152316 -82447614 + MIR3 SINE MIR 20 205 -3 22 80 0 0 chrX 80152663 80152713 -82447217 + AT_rich Low_complexity Low_complexity 1 50 0 1831 146 7 0 chrX 80153295 80153569 -82446361 + AluSx SINE Alu 1 276 -36 1051 239 69 39 chrX 80153570 80154006 -82445924 - L1MC4 LINE L1 -124 7918 7470 22 0 0 0 chrX 80154487 80154509 -82445421 + AT_rich Low_complexity Low_complexity 1 22 0 1668 159 25 14 chrX 80154510 80154793 -82445137 - AluJo SINE Alu -26 286 1 630 309 97 73 chrX 80155392 80155979 -82443951 + L2 LINE L2 2708 3313 0 31 44 0 0 chrX 80156162 80156207 -82443723 + AT_rich Low_complexity Low_complexity 1 45 0 378 0 0 0 chrX 80156944 80156986 -82442944 + (TG)n Simple_repeat Simple_repeat 2 43 0 303 335 18 55 chrX 80157591 80157755 -82442175 - L1M2 LINE L1 -6678 171 14 1585 337 51 36 chrX 80157755 80159275 -82440655 - L1PBa LINE L1 -5419 1443 3 538 180 45 0 chrX 80159284 80159395 -82440535 - L1MB4 LINE L1 -37 6143 6028 201 176 0 0 chrX 80159703 80159737 -82440193 + (TA)n Simple_repeat Simple_repeat 1 34 0 270 213 0 53 chrX 80159741 80159835 -82440095 - L1MC4 LINE L1 -1339 6703 6615 585 358 16 29 chrX 80159841 80160087 -82439843 + LTR16C LTR ERVL 100 342 -149 262 324 0 0 chrX 80160187 80160255 -82439675 - L1MEd LINE L1 -5532 587 520 4956 59 3 0 chrX 80160454 80161080 -82438850 + L1PA7 LINE L1 5527 6154 0 314 242 102 25 chrX 80161243 80161400 -82438530 - L1ME2 LINE L1 -213 5951 5783 387 125 0 0 chrX 80161506 80161570 -82438360 - L1MA7 LINE L1 -12 6279 6216 1048 300 53 60 chrX 80161668 80161734 -82438196 - L1MEd LINE L1 -4871 1248 1183 1538 215 0 0 chrX 80161734 80162022 -82437908 + AluSx SINE Alu 6 293 -19 1048 300 53 60 chrX 80162022 80162399 -82437531 - L1MEd LINE L1 -4936 1183 810 1434 194 53 0 chrX 80162399 80162682 -82437248 - AluSx SINE Alu -14 298 1 1048 300 53 60 chrX 80162682 80163041 -82436889 - L1MEd LINE L1 -5309 810 450 2730 191 33 11 chrX 80163293 80163901 -82436029 - L1PB4 LINE L1 -3 6153 5533 3670 200 37 14 chrX 80163901 80164854 -82435076 - L1P5 LINE L1 -524 5632 4655 1579 204 0 3 chrX 80164854 80165148 -82434782 - AluJb SINE Alu -15 297 5 3670 200 37 14 chrX 80165148 80165313 -82434617 - L1P5 LINE L1 -1501 4655 4495 1160 172 49 41 chrX 80165313 80165580 -82434350 + THE1C LTR MaLR 1 269 -106 353 286 34 7 chrX 80165584 80165778 -82434152 - L1ME2 LINE L1 -747 5399 5194 23 0 0 0 chrX 80165811 80165834 -82434096 + AT_rich Low_complexity Low_complexity 1 23 0 982 181 69 23 chrX 80165834 80166094 -82433836 - L1MA7 LINE L1 -3 6288 6017 506 269 18 6 chrX 80166091 80166262 -82433668 + L1ME LINE L1 5292 5464 -700 * 5512 143 12 7 chrX 80166262 80167269 -82432661 + L1PA15 LINE L1 5149 6160 -5 7559 219 37 8 chrX 80167300 80169328 -82430602 - L1M2 LINE L1 -565 5726 3630 1222 250 60 0 chrX 80169337 80169785 -82430145 - L1M2 LINE L1 -2812 3334 2860 543 275 110 6 chrX 80169843 80170170 -82429760 - L1MEc LINE L1 -3517 2563 2203 1069 129 74 0 chrX 80170184 80170386 -82429544 - L1MA6 LINE L1 -4 6296 6080 248 200 0 0 chrX 80170387 80170442 -82429488 + L1MA6 LINE L1 6011 6065 -235 * 384 249 104 10 chrX 80170441 80170661 -82429269 - L1MEc LINE L1 -3869 2232 2012 25 31 0 0 chrX 80170783 80170815 -82429115 + AT_rich Low_complexity Low_complexity 1 32 0 482 297 101 52 chrX 80170982 80171578 -82428352 - L1MEc LINE L1 -4612 1649 1025 309 243 157 7 chrX 80171716 80171856 -82428074 - L1MEc LINE L1 -5195 875 715 23 0 0 0 chrX 80172389 80172412 -82427518 + AT_rich Low_complexity Low_complexity 1 23 0 603 280 20 76 chrX 80172504 80172754 -82427176 - LTR16B LTR ERVL -14 450 215 798 385 28 13 chrX 80173212 80173819 -82426111 - ERVL LTR ERVL -601 5163 4548 1121 381 18 13 chrX 80173869 80174483 -82425447 - ERVL LTR ERVL -1259 4395 3779 222 37 0 0 chrX 80174485 80174512 -82425418 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 943 212 55 0 chrX 80174512 80174748 -82425182 + L1MC4a LINE L1 4301 4549 -1597 13391 64 5 7 chrX 80174770 80177310 -82422620 - L1PA6 LINE L1 -5 6149 3604 705 273 100 9 chrX 80177410 80177641 -82422289 + L2 LINE L2 2132 2383 -931 1069 193 9 48 chrX 80178250 80178478 -82421452 - MER20 DNA MER1_type 0 219 1 594 276 44 24 chrX 80179657 80179743 -82420187 + MER112 DNA MER1_type 1 84 -172 282 29 0 0 chrX 80179743 80179778 -82420152 + (CA)n Simple_repeat Simple_repeat 2 36 0 594 276 44 24 chrX 80179778 80179941 -82419989 + MER112 DNA MER1_type 84 255 -1 1823 167 3 0 chrX 80182064 80182363 -82417567 + AluJb SINE Alu 3 302 -10 575 270 111 26 chrX 80183076 80183302 -82416628 - MIR SINE MIR -16 246 2 467 325 19 19 chrX 80183947 80184101 -82415829 + L2 LINE L2 2734 2887 -427 485 278 42 28 chrX 80184493 80184777 -82415153 + L1MC5 LINE L1 7506 7793 -168 336 275 47 70 chrX 80184839 80185097 -82414833 + L1MC4a LINE L1 5011 5262 -884 249 164 49 0 chrX 80185122 80185183 -82414747 + L1MC4a LINE L1 5376 5439 -2369 1167 257 116 43 chrX 80185207 80185829 -82414101 + L1MC4a LINE L1 5511 6177 -1631 312 320 109 6 chrX 80185943 80186118 -82413812 + L2 LINE L2 3118 3310 -3 607 286 75 33 chrX 80186806 80187047 -82412883 + MIR SINE MIR 2 252 -10 240 35 0 0 chrX 80187610 80187639 -82412291 + (TG)n Simple_repeat Simple_repeat 2 30 0 333 137 2 19 chrX 80188034 80188092 -82411838 + THE1B LTR MaLR 225 284 -74 556 100 0 0 chrX 80188092 80188172 -82411758 + L1PA6 LINE L1 19 98 -6048 * 7795 117 19 75 chrX 80188170 80189639 -82410291 + L1PA6 LINE L1 623 2009 -4137 23225 66 8 0 chrX 80189585 80193470 -82406460 + L1PA6 LINE L1 2266 6148 -6 37 0 0 0 chrX 80193528 80193565 -82406365 + AT_rich Low_complexity Low_complexity 1 37 0 6567 120 18 3 chrX 80193578 80194628 -82405302 - L1MA3 LINE L1 0 6305 5240 1900 152 46 67 chrX 80194629 80195064 -82404866 + MSTA LTR MaLR 1 426 -2 4165 178 112 23 chrX 80195068 80195976 -82403954 + MSTA-int LTR MaLR 3 991 -589 2110 166 11 3 chrX 80195980 80196354 -82403576 + MSTA-int LTR MaLR 1275 1651 0 2225 172 44 7 chrX 80196354 80196767 -82403163 + MSTA LTR MaLR 1 428 0 9767 205 31 21 chrX 80196767 80196828 -82403102 - L1 LINE L1 -903 6662 6603 217 49 0 49 chrX 80196828 80196869 -82403061 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9767 205 31 21 chrX 80196869 80200366 -82399564 - L1 LINE L1 -962 6603 3141 1659 169 53 0 chrX 80200366 80200530 -82399400 - AluJo SINE Alu -13 299 112 393 22 0 0 chrX 80200530 80200576 -82399354 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1659 169 53 0 chrX 80200576 80200695 -82399235 - AluJo SINE Alu -200 112 1 9767 205 31 21 chrX 80200695 80200744 -82399186 - L1 LINE L1 -4424 3141 3094 3324 46 0 5 chrX 80200744 80201158 -82398772 - L1PA5 LINE L1 -3 6151 5740 9767 205 31 21 chrX 80201158 80201482 -82398448 - L1 LINE L1 -4471 3094 2780 724 148 27 20 chrX 80201487 80201636 -82398294 - L1 LINE L1 -5015 2550 2401 4506 141 12 40 chrX 80201639 80202556 -82397374 - L1MC1 LINE L1 -317 6085 5221 818 191 19 86 chrX 80202562 80202819 -82397111 - L1MB7 LINE L1 -9 6175 5936 1875 225 30 16 chrX 80202824 80203317 -82396613 - L1MC1 LINE L1 -979 5236 4737 1222 287 38 5 chrX 80203295 80203873 -82396057 - L1MC1 LINE L1 -1739 4476 3880 * 969 238 24 32 chrX 80204393 80204734 -82395196 - L1MC1 LINE L1 -2333 3882 3545 422 314 64 0 chrX 80204803 80205039 -82394891 - L1MC1 LINE L1 -4576 1820 1570 306 309 60 24 chrX 80205045 80205213 -82394717 - L1MC1 LINE L1 -4795 1601 1428 1888 272 62 0 chrX 80205418 80205852 -82394078 + MLT1G LTR MaLR 118 578 -12 484 276 21 0 chrX 80205886 80206078 -82393852 + L1ME LINE L1 4143 4338 -1808 1270 241 114 15 chrX 80206101 80206846 -82393084 + L1ME LINE L1 4648 5473 -697 668 311 201 22 chrX 80206847 80207255 -82392675 + L3 LINE CR1 999 1479 -98 2167 145 61 32 chrX 80207299 80207815 -82392115 - MLT2A2 LTR ERVL -1 553 1 2114 113 10 70 chrX 80208629 80208794 -82391136 + THE1C LTR MaLR 2 175 -200 194 22 44 44 chrX 80208794 80208839 -82391091 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1903 110 42 0 chrX 80208843 80209106 -82390824 - AluSc SINE Alu -35 274 1 2114 113 10 70 chrX 80209106 80209333 -82390597 + THE1C LTR MaLR 178 375 0 23 92 0 0 chrX 80209386 80209451 -82390479 + AT_rich Low_complexity Low_complexity 1 65 0 499 254 95 47 chrX 80210611 80210641 -82389289 + MIR SINE MIR 7 34 -228 13451 62 24 0 chrX 80210641 80213133 -82386797 + L1PA6 LINE L1 3640 6151 -3 499 254 95 47 chrX 80213133 80213271 -82386659 + MIR SINE MIR 34 183 -79 1133 103 54 34 chrX 80216147 80216351 -82383579 - L1PA16 LINE L1 0 6166 5959 1176 93 0 0 chrX 80216950 80217111 -82382819 + AluY SINE Alu 144 304 -7 3673 144 25 117 chrX 80217195 80218571 -82381359 - L1MA4 LINE L1 0 6300 5063 559 285 60 45 chrX 80218613 80218813 -82381117 - MIR SINE MIR -48 214 12 2267 74 0 20 chrX 80220241 80220539 -82379391 + AluY SINE Alu 1 292 -19 1966 167 0 0 chrX 80221269 80221574 -82378356 - AluSx SINE Alu -7 305 1 523 304 19 67 chrX 80221593 80221863 -82378067 - MIR SINE MIR 0 262 6 521 234 193 5 chrX 80222765 80222957 -82376973 - MIR SINE MIR -32 230 3 2823 92 29 38 chrX 80223465 80223569 -82376361 + MLT2A1 LTR ERVL 1 104 -340 2518 30 0 10 chrX 80223569 80223866 -82376064 + AluY SINE Alu 1 294 -17 2823 92 29 38 chrX 80223866 80224209 -82375721 + MLT2A1 LTR ERVL 104 444 0 745 190 0 7 chrX 80224380 80224522 -82375408 + FLAM_C SINE Alu 3 143 0 615 300 97 35 chrX 80226104 80226640 -82373290 - L2 LINE L2 -996 2318 1750 238 320 30 10 chrX 80227535 80227635 -82372295 + L3 LINE CR1 1471 1572 -5 5138 122 17 12 chrX 80228561 80229403 -82370527 - L1MA3 LINE L1 0 6305 5460 4956 222 32 6 chrX 80229403 80230900 -82369030 - L1 LINE L1 -2856 3290 1762 444 175 0 0 chrX 80230900 80230997 -82368933 + (TA)n Simple_repeat Simple_repeat 2 98 0 267 258 0 0 chrX 80231000 80231089 -82368841 + L1MC4 LINE L1 6615 6703 -1339 971 180 10 10 chrX 80231095 80231301 -82368629 + L1 LINE L1 4171 4376 -1770 * 1435 54 78 0 chrX 80231295 80231499 -82368431 + L1PBa LINE L1 2192 2411 -4452 8662 201 19 13 chrX 80231528 80233584 -82366346 - L1 LINE L1 -1632 4514 2446 332 359 106 7 chrX 80234211 80234353 -82365577 - L3b LINE CR1 -24 1559 1404 7517 31 8 2 chrX 80234445 80235590 -82364340 - L1PA4 LINE L1 -7 6148 5002 1336 174 92 39 chrX 80235971 80236252 -82363678 - AluJo SINE Alu -16 296 1 2246 146 67 5 chrX 80237548 80237967 -82361963 - L1PB4 LINE L1 -1 6155 5711 819 159 32 32 chrX 80238162 80238351 -82361579 - L1MA8 LINE L1 -111 6180 5992 373 298 75 101 chrX 80238371 80238747 -82361183 - L3 LINE CR1 -156 1421 1056 357 116 0 0 chrX 80238750 80238819 -82361111 + (TA)n Simple_repeat Simple_repeat 2 70 0 216 55 14 96 chrX 80238821 80238894 -82361036 + (TTTTA)n Simple_repeat Simple_repeat 4 70 0 1188 204 123 54 chrX 80238909 80239242 -82360688 + MLT1D LTR MaLR 148 503 -2 32 43 0 0 chrX 80239979 80240025 -82359905 + AT_rich Low_complexity Low_complexity 1 46 0 3229 113 32 63 chrX 80240359 80240985 -82358945 - MER4B LTR ERV1 0 779 1 4281 132 22 66 chrX 80241409 80242230 -82357700 - LTR1 LTR ERV1 0 785 1 259 258 116 70 chrX 80242248 80242436 -82357494 + MIR SINE MIR 16 201 -61 1105 298 58 48 chrX 80242447 80242943 -82356987 - L2 LINE L2 -2 3311 2811 323 321 0 0 chrX 80244175 80244281 -82355649 + (TATATG)n Simple_repeat Simple_repeat 3 108 0 356 222 111 32 chrX 80244311 80244437 -82355493 + MIR SINE MIR 127 262 0 332 264 129 21 chrX 80244502 80244642 -82355288 + MIR SINE MIR 95 249 -13 354 61 0 0 chrX 80244663 80244712 -82355218 + (ATG)n Simple_repeat Simple_repeat 2 50 0 212 178 22 0 chrX 80244844 80244889 -82355041 + CT-rich Low_complexity Low_complexity 2 47 0 533 205 31 19 chrX 80245123 80245284 -82354646 - MER96B DNA MER1_type? -238 179 17 297 282 0 16 chrX 80245728 80245813 -82354117 - MIR SINE MIR -78 130 47 571 283 98 0 chrX 80245894 80246078 -82353852 - MIR SINE MIR -14 248 47 532 296 42 77 chrX 80247188 80247448 -82352482 + MIR SINE MIR 1 251 -11 227 333 42 14 chrX 80248798 80248870 -82351060 + MER5A DNA MER1_type 71 144 -45 342 107 0 0 chrX 80249145 80249201 -82350729 + (GA)n Simple_repeat Simple_repeat 1 56 0 16968 173 57 19 chrX 80249388 80251059 -82348871 + L1MA2 LINE L1 17 1623 -5942 384 22 0 0 chrX 80251059 80251104 -82348826 + (GA)n Simple_repeat Simple_repeat 2 46 0 16968 173 57 19 chrX 80251104 80252656 -82347274 + L1MA2 LINE L1 1623 3363 -4202 1783 190 26 3 chrX 80252667 80253056 -82346874 + L1MA2 LINE L1 5759 6156 -1409 3319 206 94 13 chrX 80253057 80253866 -82346064 + MER52A LTR ERV1 1 956 -799 2697 179 19 36 chrX 80253899 80254425 -82345505 + MER52A LTR ERV1 1239 1755 0 5925 138 37 33 chrX 80254425 80255985 -82343945 + L1MA2 LINE L1 6154 7723 0 314 346 47 43 chrX 80256021 80256232 -82343698 - MIR SINE MIR -50 212 1 240 273 104 13 chrX 80256263 80256340 -82343590 - MIR SINE MIR 0 262 179 1329 60 35 35 chrX 80256920 80257120 -82342810 - L1PA7 LINE L1 -6 6148 5949 239 330 36 45 chrX 80257495 80257607 -82342323 - L2 LINE L2 -15 3298 3188 8265 204 19 8 chrX 80257982 80260485 -82339445 - L1P4 LINE L1 -397 6472 3942 802 184 43 25 chrX 80260462 80260625 -82339305 - L1P4 LINE L1 -5268 1581 1416 * 4521 160 16 13 chrX 80260625 80261373 -82338557 - L1P4 LINE L1 -6091 758 9 257 0 30 0 chrX 80261373 80261406 -82338524 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 231 303 26 13 chrX 80261419 80261495 -82338435 + L2 LINE L2 3234 3310 -3 208 279 103 15 chrX 80261895 80261963 -82337967 + L2 LINE L2 3229 3302 -11 377 237 104 37 chrX 80262111 80262246 -82337684 + L1ME1 LINE L1 6006 6149 -17 31 0 0 0 chrX 80262246 80262277 -82337653 + AT_rich Low_complexity Low_complexity 1 31 0 2332 83 0 22 chrX 80262383 80262697 -82337233 + AluY SINE Alu 1 307 -4 424 278 22 26 chrX 80263723 80263864 -82336066 + MIR SINE MIR 4 145 -63 1402 123 46 0 chrX 80264784 80265003 -82334927 + MER30 DNA MER1_type 2 230 0 656 276 12 0 chrX 80265618 80265781 -82334149 - FRAM SINE Alu -1 165 1 857 207 116 15 chrX 80265994 80266368 -82333562 + LTR40b LTR ERVL 1 462 0 2299 91 3 0 chrX 80267155 80267451 -82332479 - AluSc SINE Alu -12 297 1 21 82 0 0 chrX 80267766 80267815 -82332115 + AT_rich Low_complexity Low_complexity 1 49 0 596 275 81 24 chrX 80269400 80269611 -82330319 - MIR SINE MIR -4 258 36 1267 203 38 14 chrX 80269611 80270090 -82329840 - MLT1E LTR MaLR 0 593 8 322 277 11 11 chrX 80270641 80270735 -82329195 - L1ME LINE L1 -452 5669 5576 778 253 5 16 chrX 80272554 80272740 -82327190 + MIR SINE MIR 78 261 -1 672 335 26 9 chrX 80273423 80273650 -82326280 + MIR SINE MIR 32 262 0 2713 212 41 5 chrX 80274456 80275070 -82324860 + L1MD3 LINE L1 7354 7989 -6 233 321 57 38 chrX 80275135 80275241 -82324689 - L2 LINE L2 -24 3289 3182 218 306 14 0 chrX 80276605 80276677 -82323253 + MIR SINE MIR 71 143 -65 21 0 0 0 chrX 80277271 80277292 -82322638 + AT_rich Low_complexity Low_complexity 1 21 0 34992 108 10 14 chrX 80277472 80283644 -82316286 - L1PA7 LINE L1 0 6154 11 1964 61 0 0 chrX 80283817 80284064 -82315866 + L1P LINE L1 1445 1691 -4455 2356 83 3 10 chrX 80284176 80284476 -82315454 + AluY SINE Alu 1 298 -13 2418 74 3 0 chrX 80284752 80285062 -82314868 - AluY SINE Alu 0 311 1 236 306 67 45 chrX 80285645 80285779 -82314151 + L2 LINE L2 3169 3305 -8 2065 88 73 4 chrX 80286594 80286868 -82313062 + AluSg SINE Alu 1 293 -17 485 235 0 0 chrX 80286897 80286995 -82312935 + FRAM SINE Alu 61 158 -18 709 168 0 0 chrX 80287549 80287662 -82312268 - AluJb SINE Alu -199 113 1 21 0 0 0 chrX 80288255 80288276 -82311654 + AT_rich Low_complexity Low_complexity 1 21 0 467 106 0 0 chrX 80288548 80288614 -82311316 - MADE1 DNA Mariner 0 80 15 2196 109 0 0 chrX 80290322 80290615 -82309315 - AluSp SINE Alu -20 293 1 11232 211 28 8 chrX 80291677 80296685 -82303245 + L1PBa LINE L1 13 5383 -1479 270 81 0 0 chrX 80297146 80297183 -82302747 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 585 312 29 14 chrX 80297673 80297949 -82301981 + L1ME LINE L1 5475 5754 -367 234 0 0 0 chrX 80298851 80298877 -82301053 + (A)n Simple_repeat Simple_repeat 1 26 0 344 366 119 5 chrX 80298903 80299105 -82300825 - MIR SINE MIR -19 243 19 9834 174 16 28 chrX 80299504 80299916 -82300014 + L1MA2 LINE L1 3155 3570 -2734 1844 98 0 0 chrX 80299916 80300167 -82299763 + L1PA7 LINE L1 5899 6154 0 9834 174 16 28 chrX 80300167 80301928 -82298002 + L1MA2 LINE L1 3570 5289 -1015 1740 184 7 0 chrX 80301928 80302222 -82297708 + AluSx SINE Alu 1 296 -16 9834 174 16 28 chrX 80302222 80303227 -82296703 + L1MA2 LINE L1 5289 6304 0 1721 148 196 6 chrX 80303537 80303895 -82296035 - MSTA LTR MaLR -2 426 1 6446 210 31 6 chrX 80303895 80305170 -82294760 - MSTA-int LTR MaLR 0 1651 346 1429 106 34 55 chrX 80305170 80305339 -82294591 + MER30 DNA MER1_type 1 172 -58 2196 116 17 17 chrX 80305339 80305692 -82294238 + THE1A LTR MaLR 1 353 -2 11667 99 1 6 chrX 80305694 80305752 -82294178 + THE1A-int LTR MaLR 1 58 -1522 2137 124 0 0 chrX 80305752 80306042 -82293888 + AluSx SINE Alu 1 290 -22 11667 99 1 6 chrX 80306042 80307571 -82292359 + THE1A-int LTR MaLR 58 1580 0 1955 169 8 8 chrX 80307571 80307926 -82292004 + THE1A LTR MaLR 1 355 0 1429 106 34 55 chrX 80307926 80307987 -82291943 + MER30 DNA MER1_type 171 230 0 1852 175 41 0 chrX 80307987 80308325 -82291605 - MSTA-int LTR MaLR -1226 354 3 1544 177 191 6 chrX 80308327 80308688 -82291242 - MSTA LTR MaLR 0 428 1 4238 191 48 8 chrX 80312128 80313401 -82286529 - L1MB7 LINE L1 -9 6175 4840 26 0 0 0 chrX 80313478 80313504 -82286426 + AT_rich Low_complexity Low_complexity 1 26 0 310 190 0 0 chrX 80313507 80313565 -82286365 - L1MA7 LINE L1 -62 6229 6172 1166 158 133 4 chrX 80313566 80313807 -82286123 - L1MA7 LINE L1 -237 6054 5783 249 239 51 8 chrX 80313808 80313925 -82286005 + (TA)n Simple_repeat Simple_repeat 1 122 0 274 282 41 0 chrX 80313970 80314140 -82285790 + (TA)n Simple_repeat Simple_repeat 2 178 0 586 77 0 0 chrX 80314142 80314220 -82285710 - L1MA7 LINE L1 -511 5780 5703 * 2181 236 17 56 chrX 80314219 80315023 -82284907 - L1MB7 LINE L1 -1305 4841 4069 14256 238 16 9 chrX 80315120 80320714 -82279216 - L1PA16 LINE L1 0 6817 1158 1429 337 40 13 chrX 80320805 80321336 -82278594 - L1PA16 LINE L1 -6242 545 1 2564 245 102 11 chrX 80321347 80322336 -82277594 - L1MB7 LINE L1 -2125 4021 2931 405 0 0 0 chrX 80322336 80322381 -82277549 + (TG)n Simple_repeat Simple_repeat 2 46 0 2564 245 102 11 chrX 80322381 80322435 -82277495 - L1MB7 LINE L1 -3215 2931 2883 34 42 0 0 chrX 80322443 80322491 -82277439 + AT_rich Low_complexity Low_complexity 1 48 0 2219 134 20 3 chrX 80322491 80322848 -82277082 - L1PB1 LINE L1 -8 6143 5781 202 250 0 0 chrX 80322850 80322890 -82277040 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 306 270 0 0 chrX 80322890 80322979 -82276951 - L1MC4 LINE L1 -1339 6703 6615 248 230 23 23 chrX 80322959 80323046 -82276884 + L1MC4 LINE L1 6617 6703 -1339 * 260 219 0 0 chrX 80323018 80323082 -82276848 - L1MC4 LINE L1 -1339 6703 6640 201 94 0 0 chrX 80323096 80323128 -82276802 + (TA)n Simple_repeat Simple_repeat 1 32 0 13644 192 28 19 chrX 80323129 80325226 -82274704 - L1P5 LINE L1 -369 6498 4421 207 0 0 0 chrX 80325226 80325249 -82274681 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13644 192 28 19 chrX 80325249 80328356 -82271574 - L1P5 LINE L1 -2446 4421 1093 3166 222 60 3 chrX 80328357 80329283 -82270647 - L1P5 LINE L1 -5815 1048 6 695 281 21 0 chrX 80329279 80329521 -82270409 - L1MEc LINE L1 -3254 3703 3457 * 396 237 50 0 chrX 80329525 80329664 -82270266 - L1MEc LINE L1 -3582 3375 3230 * 6534 141 24 10 chrX 80329643 80331079 -82268851 - L1MA3 LINE L1 -1 7115 5661 2583 164 2 7 chrX 80331082 80331528 -82268402 + L1PA16 LINE L1 5525 5968 -198 9751 43 2 0 chrX 80332029 80333996 -82265934 - L1PA5 LINE L1 -1 6153 4183 24 67 0 0 chrX 80334422 80334467 -82265463 + AT_rich Low_complexity Low_complexity 1 45 0 4383 148 16 9 chrX 80334675 80335479 -82264451 - L1MA3 LINE L1 -1287 4859 4050 870 242 74 44 chrX 80335488 80336279 -82263651 - L1MEc LINE L1 -3699 3258 2476 259 269 84 8 chrX 80336289 80336408 -82263522 - L1MEc LINE L1 -6720 139 12 322 282 59 0 chrX 80336718 80336803 -82263127 - MIR SINE MIR -18 244 155 1799 199 43 6 chrX 80336803 80337149 -82262781 + MLT2D LTR ERVL 4 362 -52 344 270 3 0 chrX 80337193 80337502 -82262428 + (TA)n Simple_repeat Simple_repeat 1 310 0 313 286 198 8 chrX 80337524 80337650 -82262280 - MIR SINE MIR -100 162 13 272 326 12 0 chrX 80338591 80338677 -82261253 - L2 LINE L2 0 3313 3227 2483 156 8 60 chrX 80338701 80339183 -82260747 + MSTB2 LTR MaLR 1 457 0 5930 223 60 52 chrX 80339184 80340511 -82259419 + MSTB2-int LTR MaLR 2 1345 -306 1619 184 0 4 chrX 80340511 80340789 -82259141 + AluJo SINE Alu 24 300 -12 5930 223 60 52 chrX 80340789 80341099 -82258831 + MSTB2-int LTR MaLR 1345 1651 0 817 155 12 54 chrX 80341099 80341267 -82258663 + MSTB2 LTR MaLR 1 161 -296 447 313 73 6 chrX 80341377 80341556 -82258374 - MER117 DNA MER1_type 0 197 7 302 312 50 21 chrX 80341561 80341702 -82258228 - MIR3 SINE MIR -48 160 16 479 322 35 13 chrX 80342768 80343061 -82256869 - ERVL LTR ERVL -5314 360 39 25 0 0 0 chrX 80343079 80343104 -82256826 + AT_rich Low_complexity Low_complexity 1 25 0 6963 130 8 1 chrX 80343156 80344441 -82255489 - L1P4 LINE L1 -658 5510 4219 2050 187 17 15 chrX 80344454 80344632 -82255298 - L1P4 LINE L1 -686 6917 6741 1629 191 0 29 chrX 80344632 80344947 -82254983 - AluJb SINE Alu -4 308 3 2050 187 17 15 chrX 80344947 80345337 -82254593 - L1P4 LINE L1 -862 6741 6346 11668 250 51 24 chrX 80345337 80346040 -82253890 - L1P4 LINE L1 -1747 5837 5155 186 43 0 0 chrX 80346040 80346063 -82253867 + (TTG)n Simple_repeat Simple_repeat 2 24 0 11668 250 51 24 chrX 80346063 80350803 -82249127 - L1P4 LINE L1 -2429 5155 212 263 27 0 27 chrX 80350803 80350840 -82249090 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 11668 250 51 24 chrX 80350840 80351054 -82248876 - L1P4 LINE L1 -7372 212 5 1307 231 46 13 chrX 80351061 80351520 -82248410 - L1M4c LINE L1 -3931 2715 2242 2510 221 56 14 chrX 80351542 80352240 -82247690 - L1M4c LINE L1 -4617 2029 1303 41824 40 23 2 chrX 80352245 80358259 -82241671 - L1PA3 LINE L1 -4 6151 3 1481 263 109 47 chrX 80358264 80359123 -82240807 - L1M4c LINE L1 -5223 1319 407 1228 238 131 51 chrX 80359456 80359905 -82240025 - MLT1D LTR MaLR 0 505 21 2136 215 10 9 chrX 80360323 80360816 -82239114 + MER89 LTR ERV1 2 559 0 1973 124 16 23 chrX 80361104 80361410 -82238520 - AluJb SINE Alu -8 304 1 800 227 44 20 chrX 80361535 80361738 -82238192 + MIR SINE MIR 49 256 -6 187 322 35 23 chrX 80362075 80362162 -82237768 - MER5A DNA MER1_type 0 189 102 186 182 0 0 chrX 80362276 80362309 -82237621 - MER5B DNA MER1_type -2 176 144 * 319 196 0 168 chrX 80362299 80362343 -82237587 + MER5B DNA MER1_type 89 106 -72 2771 13 0 6 chrX 80362343 80362656 -82237274 - AluYa5 SINE Alu 0 311 1 319 196 0 168 chrX 80362656 80362718 -82237212 + MER5B DNA MER1_type 106 177 -1 * 549 338 72 9 chrX 80362718 80363026 -82236904 - L2 LINE L2 -622 2692 2365 251 317 49 24 chrX 80363093 80363216 -82236714 - MER5A DNA MER1_type -3 186 61 527 100 0 0 chrX 80363290 80363360 -82236570 - L1PA10 LINE L1 -203 5969 5900 1141 105 29 0 chrX 80363360 80363529 -82236401 + L1PA10 LINE L1 5980 6156 -12 258 147 44 15 chrX 80364651 80364719 -82235211 + (TA)n Simple_repeat Simple_repeat 2 71 0 344 278 293 0 chrX 80365764 80365897 -82234033 + MER5A DNA MER1_type 15 186 -3 203 138 0 0 chrX 80366043 80366072 -82233858 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 889 173 0 6 chrX 80366079 80366235 -82233695 - L1PB4 LINE L1 -12 6144 5990 781 211 48 6 chrX 80366505 80366781 -82233149 + MER33 DNA MER1_type 1 355 -8 557 278 55 15 chrX 80368235 80368439 -82231491 + MIR SINE MIR 37 250 -12 193 253 89 25 chrX 80368459 80368538 -82231392 - L2 LINE L2 -33 3280 3197 10225 183 31 32 chrX 80369212 80369282 -82230648 - L1PA10 LINE L1 -636 5529 5460 4212 102 37 0 chrX 80369282 80369901 -82230029 + L1PA10 LINE L1 5526 6167 -1 10225 183 31 32 chrX 80369901 80372299 -82227631 - L1P4 LINE L1 -705 5460 3072 778 268 69 13 chrX 80372942 80373173 -82226757 + MIR SINE MIR 2 245 -17 509 311 162 22 chrX 80373233 80373461 -82226469 + MIR SINE MIR 3 262 0 303 303 20 10 chrX 80373483 80373582 -82226348 - L1MC/D LINE L1 -2006 5802 5703 3139 171 6 4 chrX 80373595 80374144 -82225786 + L1PB4 LINE L1 5597 6146 -10 22 0 0 0 chrX 80374144 80374166 -82225764 + AT_rich Low_complexity Low_complexity 1 22 0 276 265 15 0 chrX 80374758 80374826 -82225104 + GA-rich Low_complexity Low_complexity 4 72 0 373 135 250 0 chrX 80374865 80374961 -82224969 - L1MA8 LINE L1 -3 6288 6169 216 336 106 0 chrX 80375357 80375461 -82224469 - MIR SINE MIR -64 144 30 352 276 0 0 chrX 80376983 80377099 -82222831 + (TA)n Simple_repeat Simple_repeat 2 117 0 1181 127 0 0 chrX 80379926 80380091 -82219839 - AluSg/x SINE Alu -12 300 136 288 77 0 0 chrX 80380094 80380133 -82219797 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 905 120 0 0 chrX 80380148 80380281 -82219649 - AluJb SINE Alu -179 133 1 358 260 183 10 chrX 80380634 80380738 -82219192 - L2 LINE L2 -1 3271 3150 654 319 97 0 chrX 80381772 80381998 -82217932 - MIR SINE MIR 0 262 15 909 121 17 35 chrX 80381998 80382172 -82217758 + MER53 DNA DNA 1 171 -18 345 318 40 64 chrX 80382518 80382691 -82217239 + MIR SINE MIR 20 188 -74 195 42 0 0 chrX 80383401 80383425 -82216505 + (TAA)n Simple_repeat Simple_repeat 1 24 0 416 295 49 16 chrX 80384379 80384501 -82215429 - MIR SINE MIR -67 141 16 563 145 120 0 chrX 80384844 80384961 -82214969 + L1MA2 LINE L1 6174 6304 0 21 0 0 0 chrX 80385302 80385323 -82214607 + AT_rich Low_complexity Low_complexity 1 21 0 206 283 41 91 chrX 80385570 80385724 -82214206 + MER5A DNA MER1_type 7 163 -26 * 232 347 0 0 chrX 80385723 80385798 -82214132 - MIR3 SINE MIR -48 160 86 5559 135 18 2 chrX 80386142 80387405 -82212525 - L1PA15 LINE L1 -6 6159 4886 201 221 0 73 chrX 80388101 80388169 -82211761 + MIR SINE MIR 127 189 -73 222 171 12 24 chrX 80388173 80388255 -82211675 + (TA)n Simple_repeat Simple_repeat 1 81 0 329 238 0 24 chrX 80388424 80388508 -82211422 - MIR SINE MIR 0 262 181 1343 209 72 31 chrX 80388575 80388934 -82210996 - MLT1A2 LTR MaLR 0 374 1 321 360 74 10 chrX 80389016 80389219 -82210711 + L2 LINE L2 841 1056 -2258 217 271 17 17 chrX 80389357 80389416 -82210514 + L2 LINE L2 3178 3236 -36 417 294 201 5 chrX 80389447 80389661 -82210269 + L3 LINE CR1 1316 1571 -6 224 219 0 0 chrX 80390270 80390311 -82209619 + CT-rich Low_complexity Low_complexity 2 42 0 1746 130 13 40 chrX 80390622 80390921 -82209009 - AluJb SINE Alu -21 291 1 4330 205 20 22 chrX 80390968 80392480 -82207450 - L1MB7 LINE L1 0 6184 4677 755 283 6 0 chrX 80392482 80392662 -82207268 + MER58B DNA MER1_type 161 341 0 996 190 28 0 chrX 80392714 80392893 -82207037 - MLT1D LTR MaLR -60 445 262 261 190 17 0 chrX 80392913 80392971 -82206959 - L1MB3 LINE L1 -31 6152 6094 1855 154 7 3 chrX 80392991 80393297 -82206633 - L1MA4 LINE L1 -289 6011 5705 1651 236 32 38 chrX 80393295 80393851 -82206079 - L1MB7 LINE L1 -1460 4686 4134 * 1135 276 44 11 chrX 80393862 80394412 -82205518 - L1MB7 LINE L1 -2770 3376 2809 * 9217 193 34 16 chrX 80394406 80394761 -82205169 - L1PA15 LINE L1 -134 6031 5684 2679 30 0 0 chrX 80394761 80395066 -82204864 - AluY SINE Alu -6 305 1 9217 193 34 16 chrX 80395066 80397021 -82202909 - L1PA15 LINE L1 -481 5684 3651 279 0 0 0 chrX 80397021 80397052 -82202878 + (TG)n Simple_repeat Simple_repeat 2 32 0 9217 193 34 16 chrX 80397052 80397757 -82202173 - L1PA15 LINE L1 -2514 3651 2960 * 12309 98 39 1 chrX 80397746 80399567 -82200363 - L1P LINE L1 -1041 5105 3215 4136 252 47 25 chrX 80399545 80401092 -82198838 - L1M4 LINE L1 -1699 4447 2867 * 798 188 0 42 chrX 80401092 80401257 -82198673 + FRAM SINE Alu 1 155 -21 420 55 0 0 chrX 80401690 80401745 -82198185 + (GA)n Simple_repeat Simple_repeat 1 55 0 364 332 39 43 chrX 80402335 80402567 -82197363 - LTR16C LTR ERVL 0 491 261 712 345 78 38 chrX 80403001 80403767 -82196163 - ERVL LTR ERVL -388 5376 4580 602 328 96 0 chrX 80403784 80404055 -82195875 - ERVL LTR ERVL -1410 4354 4058 914 295 77 49 chrX 80404245 80404713 -82195217 - MLT1H LTR MaLR 0 549 69 316 279 135 61 chrX 80404758 80405167 -82194763 - ERVL LTR ERVL -1851 3803 3320 2080 225 63 2 chrX 80405370 80405859 -82194071 + LTR53 LTR ERVL 1 519 0 1767 240 13 11 chrX 80405997 80406467 -82193463 + L1P LINE L1 4849 5319 -827 310 95 0 0 chrX 80406766 80406808 -82193122 - 5S rRNA rRNA -79 42 1 238 284 32 21 chrX 80407302 80407397 -82192533 + MIR SINE MIR 106 201 -61 30 59 0 0 chrX 80408006 80408057 -82191873 + AT_rich Low_complexity Low_complexity 1 51 0 754 174 5 1 chrX 80408241 80408424 -82191506 + L1PA16 LINE L1 5940 6158 -8 296 209 467 27 chrX 80409750 80409975 -82189955 + MER5C DNA MER1_type 1 324 0 681 304 54 5 chrX 80410060 80410264 -82189666 + MIR SINE MIR 49 262 0 1284 132 0 0 chrX 80411523 80411727 -82188203 - L1MA4 LINE L1 -9 6291 6088 389 249 64 23 chrX 80411779 80411947 -82187983 + MIR SINE MIR 3 262 0 314 259 123 25 chrX 80412120 80412282 -82187648 - L1ME4a LINE L1 -1 6120 5943 23 0 0 0 chrX 80412743 80412766 -82187164 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 80412946 80412968 -82186962 + AT_rich Low_complexity Low_complexity 1 22 0 5628 145 56 7 chrX 80412968 80414658 -82185272 - L1MA1 LINE L1 0 6302 4523 26 64 0 0 chrX 80414762 80414809 -82185121 + AT_rich Low_complexity Low_complexity 1 47 0 234 313 62 55 chrX 80415199 80415327 -82184603 - L2 LINE L2 -12 3301 3173 22 56 0 0 chrX 80415870 80415906 -82184024 + AT_rich Low_complexity Low_complexity 1 36 0 252 304 10 39 chrX 80416938 80417040 -82182890 + MIR SINE MIR 4 102 -160 242 109 17 67 chrX 80417540 80417659 -82182271 + (TA)n Simple_repeat Simple_repeat 1 113 0 24 32 0 0 chrX 80418179 80418210 -82181720 + AT_rich Low_complexity Low_complexity 1 31 0 4725 107 9 13 chrX 80419001 80419695 -82180235 - LTR8 LTR ERV1 0 691 1 548 300 63 10 chrX 80419703 80419910 -82180020 + MIR SINE MIR 50 262 0 682 209 30 112 chrX 80421665 80421933 -82177997 + MIR SINE MIR 11 256 -6 207 0 0 0 chrX 80421934 80421957 -82177973 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 279 305 20 7 chrX 80421969 80422120 -82177810 + (CTA)n Simple_repeat Simple_repeat 1 153 0 315 71 0 0 chrX 80423796 80423838 -82176092 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chrX 80424342 80424371 -82175559 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 80424443 80424472 -82175458 + AT_rich Low_complexity Low_complexity 1 29 0 388 305 74 41 chrX 80424689 80424958 -82174972 + L1ME4a LINE L1 5795 6072 -49 28 48 0 0 chrX 80425183 80425225 -82174705 + AT_rich Low_complexity Low_complexity 1 42 0 30 27 0 0 chrX 80425617 80425654 -82174276 + AT_rich Low_complexity Low_complexity 1 37 0 192 247 111 37 chrX 80427481 80427562 -82172368 + L3 LINE CR1 1001 1087 -490 184 235 59 44 chrX 80427745 80427813 -82172117 + MIR3 SINE MIR 128 196 -12 637 325 21 42 chrX 80427879 80428116 -82171814 - MIR SINE MIR 0 262 31 25 0 0 0 chrX 80428247 80428272 -82171658 + AT_rich Low_complexity Low_complexity 1 25 0 2073 239 57 89 chrX 80428272 80429712 -82170218 - L1MC5 LINE L1 -54 7907 6508 2784 247 31 22 chrX 80429936 80430708 -82169222 - L1ME1 LINE L1 -5 6161 5383 6975 215 32 6 chrX 80430719 80433503 -82166427 - L1PA16 LINE L1 0 6166 3042 12754 96 2 2 chrX 80433504 80435236 -82164694 - HERVL-A1 LTR ERVL -3923 1731 1 2759 93 83 5 chrX 80435238 80435267 -82164663 - MLT2A1 LTR ERVL -2 442 417 288 0 0 0 chrX 80435267 80435299 -82164631 + (CA)n Simple_repeat Simple_repeat 2 33 0 2759 93 83 5 chrX 80435299 80435679 -82164251 - MLT2A1 LTR ERVL -27 417 1 4199 250 41 7 chrX 80435683 80436939 -82162991 - L1 LINE L1 -1553 4829 3532 1608 196 6 6 chrX 80436945 80437266 -82162664 - L1PA16 LINE L1 -9 6157 5837 22670 119 23 12 chrX 80437374 80440973 -82158957 - L1P LINE L1 -2496 3650 11 417 287 78 39 chrX 80440993 80441251 -82158679 - L1MEd LINE L1 -5033 1086 819 21 0 0 0 chrX 80441299 80441320 -82158610 + AT_rich Low_complexity Low_complexity 1 21 0 342 333 0 9 chrX 80441448 80441559 -82158371 - LTR16C LTR ERVL -1 490 381 1034 219 4 15 chrX 80441662 80441922 -82158008 - L1MEc LINE L1 -1414 4801 4545 207 0 0 0 chrX 80441922 80441945 -82157985 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1821 194 10 12 chrX 80441952 80441975 -82157955 - L1MEc LINE L1 -1634 4581 4559 1767 190 7 0 chrX 80441975 80442285 -82157645 - AluJo SINE Alu 0 312 1 1821 194 10 12 chrX 80442285 80442678 -82157252 - L1MEc LINE L1 -1656 4559 4166 1872 250 87 27 chrX 80442680 80443559 -82156371 - L1 LINE L1 -2853 3529 2704 2232 66 14 7 chrX 80443559 80443847 -82156083 - AluY SINE Alu -21 290 1 1872 250 87 27 chrX 80443847 80443929 -82156001 - L1 LINE L1 -3678 2704 2628 853 274 92 0 chrX 80443929 80444243 -82155687 + MER2 DNA MER2_type 1 343 -1 1872 250 87 27 chrX 80444243 80445125 -82154805 - L1 LINE L1 -3754 2628 1472 2714 154 16 19 chrX 80445159 80445646 -82154284 - L1PB4 LINE L1 -3 6153 5668 1816 270 34 39 chrX 80445647 80446284 -82153646 - L1MEc LINE L1 -2898 3317 2683 2053 87 0 21 chrX 80446284 80446607 -82153323 - AluY SINE Alu 0 317 1 1816 270 34 39 chrX 80446607 80446843 -82153087 - L1MEc LINE L1 -3532 2683 2447 651 288 33 5 chrX 80446841 80447056 -82152874 - L1MEc LINE L1 -6131 265 45 * 204 163 0 23 chrX 80447061 80447104 -82152826 + T-rich Low_complexity Low_complexity 5 46 0 22 35 0 0 chrX 80447372 80447401 -82152529 + AT_rich Low_complexity Low_complexity 1 29 0 1468 176 15 28 chrX 80447605 80447907 -82152023 + MER4E LTR ERV1 427 779 0 4616 119 0 23 chrX 80448063 80448770 -82151160 + LTR8 LTR ERV1 1 691 0 30112 110 16 12 chrX 80449754 80454599 -82145331 + L1P2 LINE L1 691 5548 -606 32252 50 3 2 chrX 80504718 80509526 -82090404 + L1PA3 LINE L1 1205 6016 -139 4967 147 20 0 chrX 80509632 80510486 -82089444 - L1MDa LINE L1 -3115 3425 2557 237 281 0 0 chrX 80510470 80510534 -82089396 + L1 LINE L1 5150 5213 -933 * 28987 38 4 24 chrX 80510527 80514496 -82085434 - L1P2 LINE L1 -602 5552 1660 3586 118 7 5 chrX 80514493 80515069 -82084861 - L1P LINE L1 -803 5343 4767 * 1009 197 117 39 chrX 80515169 80515478 -82084452 - L1MDa LINE L1 -4125 2415 2083 2460 179 43 36 chrX 80515479 80515584 -82084346 - L1MB8 LINE L1 -1 6177 6074 1152 209 42 67 chrX 80515584 80515990 -82083940 - MSTD LTR MaLR 0 396 1 2460 179 43 36 chrX 80515990 80516442 -82083488 - L1MB8 LINE L1 -104 6074 5616 * 2527 221 25 20 chrX 80516441 80517130 -82082800 - L1MB8 LINE L1 -808 5338 4647 918 163 10 20 chrX 80517158 80517354 -82082576 + L1MB8 LINE L1 5981 6174 -4 7488 156 21 12 chrX 80517884 80520092 -82079838 - L1PA13 LINE L1 -6 6157 3942 262 254 14 0 chrX 80520943 80521014 -82078916 + L2 LINE L2 3242 3313 0 289 298 40 12 chrX 80521290 80521447 -82078483 + MIR SINE MIR 21 262 0 363 339 16 39 chrX 80521855 80521982 -82077948 + MIR SINE MIR 20 143 -65 461 255 27 7 chrX 80522256 80522405 -82077525 + L1MA9 LINE L1 5277 5428 -2380 231 61 0 0 chrX 80523681 80523714 -82076216 + (CA)n Simple_repeat Simple_repeat 2 34 0 692 166 86 0 chrX 80524847 80524998 -82074932 + L1MA9 LINE L1 6112 6275 -37 2280 111 0 0 chrX 80525587 80525893 -82074037 - AluSx SINE Alu -6 306 1 321 253 0 12 chrX 80525914 80525997 -82073933 + MIR3 SINE MIR 87 168 -40 22 0 0 0 chrX 80526492 80526514 -82073416 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chrX 80526645 80526678 -82073252 + AT_rich Low_complexity Low_complexity 1 33 0 240 141 28 14 chrX 80528517 80528588 -82071342 + (TAA)n Simple_repeat Simple_repeat 2 73 0 905 168 0 11 chrX 80529009 80529188 -82070742 + MER96B DNA MER1_type? 4 180 -237 317 253 13 0 chrX 80529234 80529309 -82070621 - MER96B DNA MER1_type? -341 76 1 29 28 0 0 chrX 80533714 80533750 -82066180 + AT_rich Low_complexity Low_complexity 1 36 0 278 276 66 0 chrX 80533907 80533983 -82065947 - MIR3 SINE MIR -3 205 125 1629 163 50 10 chrX 80534214 80534514 -82065416 + AluJb SINE Alu 1 312 0 501 277 41 31 chrX 80534634 80534829 -82065101 - MIR SINE MIR -46 216 20 192 282 0 0 chrX 80536587 80536704 -82063226 + GA-rich Low_complexity Low_complexity 3 119 0 381 282 168 42 chrX 80536706 80537086 -82062844 + HAL1 LINE L1 875 1302 -1205 22 35 0 0 chrX 80537172 80537201 -82062729 + AT_rich Low_complexity Low_complexity 1 29 0 4637 194 61 30 chrX 80537779 80538142 -82061788 - L1MB7 LINE L1 -16 6168 5818 2736 174 102 2 chrX 80538142 80538341 -82061589 + MER6A DNA MER2_type 1 179 -686 342 0 0 0 chrX 80538341 80538379 -82061551 + (TG)n Simple_repeat Simple_repeat 2 39 0 2736 174 102 2 chrX 80538379 80538729 -82061201 + MER6A DNA MER2_type 179 605 0 4637 194 61 30 chrX 80538729 80540370 -82059560 - L1MB7 LINE L1 -366 5818 4102 21 36 0 0 chrX 80541796 80541824 -82058106 + AT_rich Low_complexity Low_complexity 1 28 0 345 295 43 61 chrX 80542418 80542695 -82057235 + L1M2 LINE L1 143 1101 -6484 2225 146 74 22 chrX 80543210 80543615 -82056315 - MSTA LTR MaLR -2 426 1 8762 184 27 3 chrX 80543615 80545227 -82054703 - MSTA-int LTR MaLR 0 1651 1 2402 139 54 10 chrX 80545227 80545637 -82054293 - MSTA LTR MaLR 0 428 1 14582 219 17 17 chrX 80546181 80547416 -82052514 + L1PA15 LINE L1 1532 2765 -4051 2014 146 0 0 chrX 80547416 80547703 -82052227 - AluSx SINE Alu -25 287 1 14582 219 17 17 chrX 80547703 80551735 -82048195 + L1PA15 LINE L1 2765 6816 0 24 53 0 0 chrX 80552495 80552533 -82047397 + AT_rich Low_complexity Low_complexity 1 38 0 544 256 0 75 chrX 80552801 80552961 -82046969 - MIR SINE MIR -4 258 111 351 293 81 0 chrX 80553157 80553256 -82046674 - L2 LINE L2 0 3313 3207 774 271 73 73 chrX 80553453 80553889 -82046041 - MLT1F LTR MaLR -106 436 1 833 285 92 64 chrX 80553895 80554568 -82045362 - HAL1 LINE L1 -1242 1265 574 789 258 128 88 chrX 80554568 80554647 -82045283 - MLT2C2 LTR ERVL 0 520 446 297 0 0 0 chrX 80554647 80554680 -82045250 + (TG)n Simple_repeat Simple_repeat 2 34 0 789 258 128 88 chrX 80554680 80555022 -82044908 - MLT2C2 LTR ERVL -74 446 82 247 318 0 64 chrX 80555048 80555158 -82044772 - HAL1 LINE L1 -1932 575 473 707 219 0 0 chrX 80555159 80555282 -82044648 - FLAM_A SINE Alu -10 123 1 370 213 0 0 chrX 80555326 80555395 -82044535 + MLT1G LTR MaLR 93 202 -347 3806 180 8 47 chrX 80555569 80556406 -82043524 - L1PB4 LINE L1 0 6156 5352 13317 197 20 23 chrX 80556421 80559658 -82040272 - L1PB1 LINE L1 -1 6866 3620 2047 67 0 8 chrX 80559658 80559913 -82040017 - AluY SINE Alu -3 308 56 13317 197 20 23 chrX 80559913 80560482 -82039448 - L1PB1 LINE L1 -3247 3620 3051 2455 28 0 3 chrX 80560482 80560772 -82039158 + L1PA3 LINE L1 5867 6155 0 13317 197 20 23 chrX 80560772 80561724 -82038206 - L1PB1 LINE L1 -3816 3051 2119 * 27931 132 18 56 chrX 80561700 80568126 -82031804 - L1PA8 LINE L1 0 6888 717 4177 181 45 11 chrX 80568129 80569934 -82029996 - L1PB1 LINE L1 -4777 2086 33 2149 236 23 13 chrX 80569916 80570519 -82029411 - L1 LINE L1 -761 5385 4777 * 3568 88 2 42 chrX 80570523 80571043 -82028887 + LTR3b LTR ERVK 2 500 0 2289 223 25 22 chrX 80571046 80571674 -82028256 - L1 LINE L1 -1371 4775 4146 843 229 18 57 chrX 80571684 80571740 -82028190 - MER20 DNA MER1_type 0 219 162 2284 89 0 13 chrX 80571740 80572042 -82027888 + AluY SINE Alu 1 298 -13 843 229 18 57 chrX 80572042 80572212 -82027718 - MER20 DNA MER1_type -57 162 2 442 256 177 25 chrX 80572217 80572420 -82027510 + MLT1G LTR MaLR 160 393 -197 195 42 0 0 chrX 80572428 80572452 -82027478 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4975 184 10 10 chrX 80572467 80573649 -82026281 - L1PA16 LINE L1 -8 6158 4976 2168 210 68 24 chrX 80573662 80574253 -82025677 + L1 LINE L1 3239 3855 -2291 2286 47 0 0 chrX 80574254 80574532 -82025398 + L1PA5 LINE L1 5869 6146 -8 3445 212 21 8 chrX 80575529 80576351 -82023579 + L1 LINE L1 3850 4681 -1465 235 180 66 0 chrX 80576482 80576543 -82023387 + MLT1G LTR MaLR 531 595 0 716 289 30 63 chrX 80576543 80576969 -82022961 + HAL1 LINE L1 1274 1685 -822 2341 171 14 22 chrX 80577030 80577475 -82022455 + L1PB4 LINE L1 564 1004 -4324 1965 193 34 9 chrX 80577477 80577913 -82022017 + L1PB4 LINE L1 3492 3938 -2390 349 70 88 0 chrX 80577913 80577970 -82021960 - L1PA13 LINE L1 -3 6160 6099 726 146 0 0 chrX 80577988 80578111 -82021819 - L1P LINE L1 -913 5233 5111 2178 201 2 18 chrX 80578111 80578564 -82021366 + L1PB4 LINE L1 3927 4372 -1956 672 329 55 33 chrX 80578564 80579308 -82020622 + ERVL LTR ERVL 3339 4080 -1405 441 188 0 12 chrX 80579985 80580070 -82019860 - LTR67 LTR ERVL -17 540 457 348 185 12 0 chrX 80580085 80580166 -82019764 + L1PA16 LINE L1 6082 6163 -3 1567 278 17 78 chrX 80580691 80581112 -82018818 - L1PA13 LINE L1 -15 6148 5754 17086 68 2 2 chrX 80581114 80584166 -82015764 - L1PA6 LINE L1 -1 6153 3105 252 0 0 0 chrX 80584184 80584212 -82015718 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 7007 14 0 0 chrX 80584212 80585003 -82014927 - L1PA2 LINE L1 -16 6139 5349 * 20387 108 23 13 chrX 80585002 80588082 -82011848 - L1PA6 LINE L1 -3025 3121 12 2148 144 12 0 chrX 80588095 80588435 -82011495 - L1PA13 LINE L1 -402 5766 5423 2879 176 63 2 chrX 80588596 80589389 -82010541 + L1PB4 LINE L1 5116 5973 -365 225 65 0 0 chrX 80589599 80589630 -82010300 + (CA)n Simple_repeat Simple_repeat 2 32 0 1436 181 7 7 chrX 80589631 80589901 -82010029 + L1PB4 LINE L1 5975 6244 -94 805 213 96 45 chrX 80589914 80590248 -82009682 - L1M4 LINE L1 -1460 4686 4336 1706 179 0 39 chrX 80590964 80591276 -82008654 - AluJo SINE Alu -12 300 1 489 316 16 47 chrX 80591285 80591448 -82008482 - MIR3 SINE MIR -13 195 37 2282 106 29 9 chrX 80591448 80591796 -82008134 - THE1A LTR MaLR 0 355 1 489 316 16 47 chrX 80591796 80591825 -82008105 - MIR3 SINE MIR -171 37 9 2335 96 0 0 chrX 80592457 80592749 -82007181 - AluSg SINE Alu -18 292 1 1005 150 6 0 chrX 80592797 80592970 -82006960 + L1PA15 LINE L1 5848 6021 -144 2049 141 132 30 chrX 80592973 80593376 -82006554 - L1P4 LINE L1 -406 5755 5312 2621 155 15 13 chrX 80593385 80593842 -82006088 - L1PA15 LINE L1 0 6165 5708 5344 256 34 23 chrX 80593844 80594005 -82005925 - L1PA13 LINE L1 -3211 3586 3428 2408 158 41 0 chrX 80594005 80594416 -82005514 + MSTA LTR MaLR 1 428 0 5344 256 34 23 chrX 80594416 80597458 -82002472 - L1PA13 LINE L1 -3369 3428 1 5798 59 1 0 chrX 80597798 80598525 -82001405 + L1PA7 LINE L1 5412 6139 -15 198 103 0 0 chrX 80598645 80598674 -82001256 + (CAT)n Simple_repeat Simple_repeat 1 29 0 292 301 68 25 chrX 80598692 80598855 -82001075 - MIR3 SINE MIR -32 176 7 23 92 0 0 chrX 80599552 80599617 -82000313 + AT_rich Low_complexity Low_complexity 1 65 0 723 271 27 11 chrX 80599748 80599936 -81999994 + MIR SINE MIR 40 230 -32 24 32 0 0 chrX 80600049 80600080 -81999850 + AT_rich Low_complexity Low_complexity 1 31 0 647 134 0 0 chrX 80600081 80600178 -81999752 + L1M1 LINE L1 5639 5735 -567 22 0 0 0 chrX 80600371 80600393 -81999537 + AT_rich Low_complexity Low_complexity 1 22 0 197 234 31 47 chrX 80600484 80600548 -81999382 + L3 LINE CR1 1479 1541 -36 28 29 0 0 chrX 80600635 80600670 -81999260 + AT_rich Low_complexity Low_complexity 1 35 0 1322 171 168 23 chrX 80601567 80601989 -81997941 - Charlie1b DNA MER1_type 0 523 42 30 0 0 0 chrX 80602374 80602404 -81997526 + AT_rich Low_complexity Low_complexity 1 30 0 700 171 96 0 chrX 80602663 80602850 -81997080 + L1ME2 LINE L1 5126 5330 -816 9541 197 28 11 chrX 80602855 80605888 -81994042 + L1PB4 LINE L1 3072 6154 -2 1764 244 85 2 chrX 80605892 80606457 -81993473 + L1ME2 LINE L1 5319 5930 -234 1084 221 28 0 chrX 80606457 80606674 -81993256 - MER58A DNA MER1_type -1 223 1 261 153 34 51 chrX 80606678 80606737 -81993193 + L1ME2 LINE L1 5935 5992 -172 649 231 201 52 chrX 80606864 80607243 -81992687 + MLT1E3 LTR MaLR 4 376 -248 232 217 0 0 chrX 80607254 80607300 -81992630 + L1MA4A LINE L1 3820 3865 -2281 * 5058 180 23 30 chrX 80607299 80608076 -81991854 + L1MA4A LINE L1 4162 4918 -1385 2900 19 0 0 chrX 80608076 80608394 -81991536 + AluYb8 SINE Alu 1 318 0 5058 180 23 30 chrX 80608394 80609162 -81990768 + L1MA4A LINE L1 4918 5690 -613 3723 145 12 21 chrX 80609162 80609829 -81990101 + L1PB4 LINE L1 5492 6154 -2 3395 143 13 19 chrX 80609835 80610464 -81989466 + L1MA4A LINE L1 5673 6297 -6 491 214 10 0 chrX 80610465 80610568 -81989362 + L1 LINE L1 5062 5165 -981 3733 108 3 9 chrX 80610571 80611135 -81988795 - L1PA13 LINE L1 0 6163 5603 6095 111 14 5 chrX 80611146 80612329 -81987601 - L1PA10 LINE L1 0 6168 4980 7445 33 11 0 chrX 80612332 80613369 -81986561 - L1PA4 LINE L1 0 6391 5354 9182 129 1 3 chrX 80613372 80614785 -81985145 - L1PA4 LINE L1 -1163 5219 3810 186 103 0 0 chrX 80614791 80614820 -81985110 + (GGGAA)n Simple_repeat Simple_repeat 2 30 0 1475 162 7 32 chrX 80614833 80615111 -81984819 + LTR1 LTR ERV1 1 271 -514 3034 164 68 4 chrX 80615119 80615675 -81984255 + LTR1 LTR ERV1 194 785 0 7993 148 14 3 chrX 80615675 80617077 -81982853 - L1PA4 LINE L1 -2569 3813 2399 233 281 0 0 chrX 80617061 80617125 -81982805 + L1 LINE L1 5150 5213 -933 * 2287 42 41 0 chrX 80617118 80617545 -81982385 - L1PA5 LINE L1 -602 5552 5107 5166 43 3 0 chrX 80617545 80618162 -81981768 + L1PA5 LINE L1 5529 6150 -4 625 186 103 26 chrX 80618173 80618329 -81981601 - MER93b LTR ERV1 -194 179 12 274 308 0 13 chrX 80618479 80618557 -81981373 + L2 LINE L2 3234 3310 -3 28 29 0 0 chrX 80618888 80618923 -81981007 + AT_rich Low_complexity Low_complexity 1 35 0 39255 40 2 1 chrX 80618936 80625088 -81974842 - L1PA4 LINE L1 -1 6154 1 3973 183 25 18 chrX 80625098 80625952 -81973978 + L1 LINE L1 3785 4644 -1502 * 4854 205 18 9 chrX 80625944 80627883 -81972047 - L1PA15 LINE L1 -18 6798 4844 4155 272 21 4 chrX 80627884 80629186 -81970744 - L1PA15 LINE L1 -2918 3879 2555 761 225 23 9 chrX 80629184 80629402 -81970528 - L1PA15 LINE L1 -4618 2169 1949 * 910 240 31 19 chrX 80629382 80629699 -81970231 - L1M4 LINE L1 -1496 5148 4828 10009 255 32 53 chrX 80629710 80632517 -81967413 + L1PA12 LINE L1 2 2868 -4716 3281 82 7 0 chrX 80632517 80632957 -81966973 + L1PA8 LINE L1 5724 6166 -6 10009 255 32 53 chrX 80632957 80635825 -81964105 + L1PA12 LINE L1 2868 6096 -1488 1262 292 78 11 chrX 80635829 80636353 -81963577 - L1M4 LINE L1 -5973 569 11 1152 261 63 48 chrX 80636353 80636921 -81963009 + L1ME1 LINE L1 5572 6148 -18 3353 104 0 0 chrX 80636948 80637420 -81962510 - L1PA8 LINE L1 -5 6167 5696 3884 133 38 8 chrX 80637420 80638029 -81961901 - L1P3 LINE L1 -5822 639 13 1980 148 0 13 chrX 80638029 80638334 -81961596 - AluSx SINE Alu -7 305 5 3168 113 2 2 chrX 80638684 80639125 -81960805 + MLT2A2 LTR ERVL 13 453 0 302 226 0 0 chrX 80639175 80639237 -81960693 + L1MEc LINE L1 43 104 -6292 207 0 0 0 chrX 80639245 80639268 -81960662 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 70 0 0 chrX 80639282 80639325 -81960605 + AT_rich Low_complexity Low_complexity 1 43 0 540 211 0 0 chrX 80639333 80639428 -81960502 - FLAM_A SINE Alu -19 123 29 1900 162 38 27 chrX 80639428 80639799 -81960131 - THE1C LTR MaLR 0 375 1 292 172 0 17 chrX 80639799 80639857 -81960073 - THE1C-int LTR MaLR 0 1580 1524 2773 249 82 24 chrX 80639880 80640251 -81959679 + L1MEc LINE L1 121 469 -5927 413 19 19 0 chrX 80640251 80640305 -81959625 + (CA)n Simple_repeat Simple_repeat 1 55 0 2773 249 82 24 chrX 80640305 80640938 -81958992 + L1MEc LINE L1 469 1183 -5213 1408 176 16 0 chrX 80640975 80641231 -81958699 + L1MD2 LINE L1 5566 5825 -534 3804 126 27 10 chrX 80641236 80641822 -81958108 + L1PB1 LINE L1 8 603 -5858 * 5241 146 11 3 chrX 80641813 80642702 -81957228 + L1PB1 LINE L1 1875 2770 -3691 * 9173 202 24 7 chrX 80642695 80645775 -81954155 + L1PB1 LINE L1 3328 6459 -7 486 271 23 16 chrX 80645777 80645906 -81954024 - MLT1A2 LTR MaLR -25 349 220 308 314 69 0 chrX 80646118 80646220 -81953710 - MIR3 SINE MIR -14 194 86 14704 146 63 44 chrX 80647711 80651369 -81948561 - MER109 Unknown Unknown 0 2432 1 2308 75 0 0 chrX 80651374 80651655 -81948275 + AluSc SINE Alu 1 281 -28 3310 104 19 11 chrX 80651968 80652495 -81947435 - L1MA2 LINE L1 -5 7718 7188 7478 188 31 4 chrX 80652502 80654842 -81945088 - L1PA13 LINE L1 -11 6152 3768 12574 198 17 11 chrX 80654842 80658276 -81941654 - L1MA2 LINE L1 -524 7199 3744 989 178 0 0 chrX 80658276 80658428 -81941502 + AluJb SINE Alu 138 289 -23 306 87 0 0 chrX 80658439 80658485 -81941445 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 17677 177 82 6 chrX 80658486 80661954 -81937976 - L1MA2 LINE L1 -3816 3749 18 324 0 0 0 chrX 80662056 80662092 -81937838 + (TG)n Simple_repeat Simple_repeat 2 37 0 3160 98 55 10 chrX 80663140 80663629 -81936301 + MER9 LTR ERVK 1 511 0 198 0 0 0 chrX 80664336 80664358 -81935572 + (A)n Simple_repeat Simple_repeat 1 22 0 500 326 22 22 chrX 80664760 80664944 -81934986 + MER5A DNA MER1_type 1 184 -5 229 270 0 50 chrX 80665664 80665764 -81934166 + A-rich Low_complexity Low_complexity 5 99 0 14211 146 7 16 chrX 80665866 80667939 -81931991 + Tigger1 DNA MER2_type 1 2093 -325 420 67 0 0 chrX 80667939 80667999 -81931931 + (TG)n Simple_repeat Simple_repeat 1 60 0 2306 58 7 0 chrX 80667999 80668277 -81931653 - AluY SINE Alu -31 280 1 14211 146 7 16 chrX 80668277 80668641 -81931289 + Tigger1 DNA MER2_type 2091 2415 -3 2028 148 6 0 chrX 80668664 80668975 -81930955 + AluSq SINE Alu 1 313 0 342 115 0 0 chrX 80668975 80669027 -81930903 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 2174 41 22 2 chrX 80669092 80674777 -81925153 + L1PA3 LINE L1 1 6144 -11 2174 24 0 0 chrX 80674777 80675029 -81924901 + L1PA3 LINE L1 5899 6151 -4 21 0 0 0 chrX 80675048 80675069 -81924861 + AT_rich Low_complexity Low_complexity 1 21 0 302 188 208 21 chrX 80675364 80675460 -81924470 + L1M4 LINE L1 4858 4971 -1175 661 260 72 0 chrX 80675492 80675673 -81924257 - MIR SINE MIR -64 198 5 345 356 21 26 chrX 80675732 80675787 -81924143 - MIR3 SINE MIR -3 205 151 520 313 105 19 chrX 80675787 80676100 -81923830 + MER102b DNA MER1_type 2 341 0 345 356 21 26 chrX 80676100 80676235 -81923695 - MIR3 SINE MIR -57 151 16 180 0 0 0 chrX 80676448 80676468 -81923462 + (T)n Simple_repeat Simple_repeat 1 20 0 1586 201 0 24 chrX 80676575 80676868 -81923062 - AluJo SINE Alu -26 286 1 233 273 0 0 chrX 80677162 80677217 -81922713 + Charlie8 DNA MER1_type 1350 1404 -1013 24 0 0 0 chrX 80678330 80678354 -81921576 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chrX 80678503 80678538 -81921392 + AT_rich Low_complexity Low_complexity 1 35 0 2561 71 0 0 chrX 80678745 80679056 -81920874 + AluY SINE Alu 1 311 0 1120 169 15 5 chrX 80679553 80679754 -81920176 - MSTB1 LTR MaLR 0 432 230 2702 129 14 14 chrX 80679756 80680190 -81919740 + MER57B LTR ERV1 1 434 0 24 0 0 0 chrX 80680257 80680281 -81919649 + AT_rich Low_complexity Low_complexity 1 24 0 333 242 0 0 chrX 80680518 80680584 -81919346 + MER57B-int LTR ERV1 234 299 -7238 22 0 0 0 chrX 80680665 80680687 -81919243 + AT_rich Low_complexity Low_complexity 1 22 0 5572 28 5 0 chrX 80680911 80681566 -81918364 + L1PA4 LINE L1 5496 6153 -2 23 0 0 0 chrX 80681566 80681589 -81918341 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 80682145 80682167 -81917763 + AT_rich Low_complexity Low_complexity 1 22 0 9475 107 4 0 chrX 80683084 80684456 -81915474 - L1P3 LINE L1 -4944 1517 141 24965 111 17 4 chrX 80684460 80688546 -81911384 + L1P LINE L1 1205 5343 -803 * 29439 31 2 0 chrX 80688543 80693032 -81906898 + L1PA3 LINE L1 1660 6155 0 436 328 62 43 chrX 80693085 80693731 -81906199 + MER57B-int LTR ERV1 3225 3882 -2919 1825 229 26 69 chrX 80693819 80694470 -81905460 + MER57B-int LTR ERV1 2145 5809 -1728 1084 273 21 43 chrX 80694509 80695131 -81904799 + MER57B-int LTR ERV1 2401 6176 -1361 501 278 55 19 chrX 80696654 80696897 -81903033 + MER57B-int LTR ERV1 6803 6991 -546 382 110 110 44 chrX 80696952 80697043 -81902887 + MER57B-int LTR ERV1 7441 7537 0 2447 137 60 14 chrX 80697043 80697458 -81902472 + MER57B LTR ERV1 1 434 0 357 194 0 0 chrX 80697458 80697525 -81902405 - MSTB1 LTR MaLR -206 226 160 2165 156 34 29 chrX 80697529 80697946 -81901984 - MSTB1 LTR MaLR -13 419 1 1612 73 0 14 chrX 80699119 80699337 -81900593 - L1PA7 LINE L1 0 6154 5940 244 233 33 11 chrX 80699517 80699607 -81900323 + L1ME LINE L1 50 141 -5929 458 346 104 54 chrX 80699732 80700030 -81899900 + L1ME LINE L1 237 549 -5521 705 282 31 12 chrX 80700091 80700350 -81899580 - L1ME1 LINE L1 -58 6108 5845 546 174 0 0 chrX 80700408 80700517 -81899413 + (TA)n Simple_repeat Simple_repeat 2 110 0 688 196 54 25 chrX 80700547 80700751 -81899179 + L1 LINE L1 4448 4657 -1489 687 266 0 5 chrX 80700746 80700930 -81899000 + L1MEc LINE L1 30 212 -6184 * 267 272 87 23 chrX 80701034 80701207 -81898723 + L1MEc LINE L1 1104 1287 -5109 180 158 0 0 chrX 80701352 80701390 -81898540 + (TTA)n Simple_repeat Simple_repeat 2 39 0 276 286 33 40 chrX 80701610 80701939 -81897991 + L1MEc LINE L1 2752 3078 -3137 41 36 0 0 chrX 80701943 80701998 -81897932 + AT_rich Low_complexity Low_complexity 1 55 0 28 0 0 0 chrX 80702020 80702048 -81897882 + AT_rich Low_complexity Low_complexity 1 28 0 2912 217 18 60 chrX 80702076 80702716 -81897214 + L1PA13 LINE L1 1 610 -6177 272 22 0 87 chrX 80702716 80702762 -81897168 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2912 217 18 60 chrX 80702762 80702832 -81897098 + L1PA13 LINE L1 610 681 -6106 * 5348 243 36 3 chrX 80702812 80704922 -81895008 + L1PA13 LINE L1 940 3134 -3663 4108 133 8 0 chrX 80704922 80705556 -81894374 + L1PA15 LINE L1 5523 6161 -4 5348 243 36 3 chrX 80705556 80705599 -81894331 + L1PA13 LINE L1 3134 3174 -3623 2046 209 22 14 chrX 80705962 80706378 -81893552 + MLT1A2-int LTR MaLR 1317 1735 0 1569 198 58 17 chrX 80706378 80706737 -81893193 + MLT1A2 LTR MaLR 1 374 0 314 329 27 7 chrX 80706872 80707021 -81892909 + L1 LINE L1 4672 4823 -1323 1310 286 83 7 chrX 80707058 80707505 -81892425 - LTR16C LTR ERVL 0 491 11 454 369 75 17 chrX 80707530 80707994 -81891936 + L1 LINE L1 4882 5372 -774 2651 210 42 62 chrX 80708156 80709213 -81890717 + L1MC5 LINE L1 6630 7665 -296 * 41024 52 4 0 chrX 80709205 80715329 -81884601 - L1PA5 LINE L1 -6 6148 1 632 173 0 0 chrX 80715361 80715465 -81884465 - U6 snRNA snRNA -3 104 1 582 93 52 0 chrX 80715467 80715564 -81884366 + L1MA1 LINE L1 6101 6202 -100 283 213 27 0 chrX 80715639 80715714 -81884216 - MER31-int LTR ERV1 -2358 2578 2502 286 160 0 0 chrX 80715904 80715954 -81883976 + Charlie1 DNA MER1_type 56 105 -2656 * 368 220 18 18 chrX 80715950 80716104 -81883826 + Charlie1 DNA MER1_type 2573 2721 -40 2030 173 48 32 chrX 80716104 80716647 -81883283 - MLT2A2 LTR ERVL 0 554 1 216 0 0 0 chrX 80716672 80716696 -81883234 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 794 177 0 0 chrX 80717027 80717157 -81882773 + FLAM_C SINE Alu 1 130 -3 289 276 20 10 chrX 80717179 80717277 -81882653 - MER31-int LTR ERV1 -3127 1809 1711 425 236 14 36 chrX 80717444 80717584 -81882346 - MER31-int LTR ERV1 -3490 1446 1310 8810 182 12 5 chrX 80717589 80719289 -81880641 - L1P LINE L1 -1187 4959 3249 3775 239 49 11 chrX 80719268 80720521 -81879409 - L1PA13 LINE L1 -4699 2088 622 * 325 167 0 39 chrX 80720599 80720677 -81879253 - MER31-int LTR ERV1 -3649 1287 1213 282 152 51 185 chrX 80722554 80722692 -81877238 - MER31-int LTR ERV1 -3733 1203 1093 1620 197 23 0 chrX 80722692 80722992 -81876938 + AluJb SINE Alu 1 307 -5 282 152 51 185 chrX 80722992 80723031 -81876899 - MER31-int LTR ERV1 -3843 1093 1050 1831 164 0 7 chrX 80723397 80723707 -81876223 + AluJb SINE Alu 1 308 -4 1116 195 111 59 chrX 80723851 80724256 -81875674 - LTR37A LTR ERV1 0 426 1 488 324 84 22 chrX 80724256 80724481 -81875449 + MIR SINE MIR 22 260 -2 397 353 45 10 chrX 80724567 80724768 -81875162 + MIR SINE MIR 2 209 -53 5761 166 14 1 chrX 80724772 80726445 -81873485 - L1PB1 LINE L1 -17 6134 4444 868 109 0 0 chrX 80726449 80726577 -81873353 + L1P LINE L1 4923 5050 -1096 7387 162 30 9 chrX 80726609 80729213 -81870717 + L1MA1 LINE L1 3640 6301 -1 29 47 0 0 chrX 80729213 80729256 -81870674 + AT_rich Low_complexity Low_complexity 1 43 0 1236 263 11 3 chrX 80729257 80729622 -81870308 + L1 LINE L1 3290 3657 -2489 771 201 10 113 chrX 80729622 80729780 -81870150 - L1MA10 LINE L1 0 6334 6218 2109 126 0 28 chrX 80729780 80730097 -81869833 - AluSg SINE Alu -2 308 1 771 201 10 113 chrX 80730097 80730231 -81869699 - L1MA10 LINE L1 -116 6218 6072 277 242 77 0 chrX 80731182 80731273 -81868657 + L1ME4a LINE L1 5966 6063 -58 22 0 0 0 chrX 80731685 80731707 -81868223 + AT_rich Low_complexity Low_complexity 1 22 0 2182 159 56 29 chrX 80731869 80732277 -81867653 - MSTA LTR MaLR -9 419 1 425 251 150 44 chrX 80732385 80732612 -81867318 - MIR SINE MIR -11 251 1 709 174 60 167 chrX 80733033 80733315 -81866615 - L2 LINE L2 -1294 2020 1769 7119 205 44 30 chrX 80733338 80736035 -81863895 - L1MA9 LINE L1 -39 7294 4552 3651 237 27 15 chrX 80736037 80737357 -81862573 - L1MA9 LINE L1 -4502 2666 1301 * 5317 170 33 7 chrX 80737332 80739030 -81860900 + L1PBa LINE L1 429 2376 -4487 * 29214 118 10 78 chrX 80739028 80743567 -81856363 - L1PA7 LINE L1 0 6154 1308 1008 76 0 0 chrX 80743567 80743723 -81856207 + L1PA3 LINE L1 6012 6170 0 29214 118 10 78 chrX 80743723 80744307 -81855623 - L1PA7 LINE L1 -4846 1308 686 2485 46 0 0 chrX 80744307 80744614 -81855316 - L1PA4 LINE L1 -3 6152 5846 29214 118 10 78 chrX 80744614 80746084 -81853846 - L1PA7 LINE L1 -5468 686 12 2165 103 17 11 chrX 80746096 80746455 -81853475 + L1PBa LINE L1 2364 2724 -4139 2614 85 3 3 chrX 80746468 80746820 -81853110 + L1P LINE L1 3 354 -5792 1022 97 0 0 chrX 80746821 80746966 -81852964 + L1PA6 LINE L1 6009 6153 -1 1750 179 3 3 chrX 80746986 80747282 -81852648 - AluSg SINE Alu -14 296 1 338 305 70 33 chrX 80747307 80747457 -81852473 - MIR SINE MIR -65 143 5 220 161 11 0 chrX 80747780 80747828 -81852102 + MIR SINE MIR 73 122 -86 278 215 89 13 chrX 80747863 80747942 -81851988 + L1M4 LINE L1 5386 5470 -714 1999 176 45 33 chrX 80747943 80748364 -81851566 + MER65C LTR ERV1 1 426 -35 7932 204 28 60 chrX 80748377 80751035 -81848895 - L1PA12 LINE L1 -2415 5169 2619 528 141 0 0 chrX 80751035 80751113 -81848817 - U6 snRNA snRNA -1 106 29 1380 211 43 23 chrX 80751210 80751509 -81848421 + AluJo SINE Alu 2 306 -6 2891 123 29 7 chrX 80751714 80752169 -81847761 - MER4C LTR ERV1 0 465 1 6614 176 30 61 chrX 80752176 80753822 -81846108 - MER4C-int LTR ERV1 -2 6596 5002 1098 137 31 0 chrX 80753824 80753985 -81845945 + AluSx SINE Alu 3 168 -144 1129 193 0 10 chrX 80753985 80754187 -81845743 - AluSg SINE Alu -110 200 1 873 138 28 6 chrX 80754193 80754374 -81845556 - MER4B-int LTR ERV1 -4881 1877 1693 665 94 0 19 chrX 80754376 80754482 -81845448 + L1PB1 LINE L1 6048 6151 0 603 216 8 0 chrX 80754518 80754643 -81845287 - L1 LINE L1 -3806 2340 2215 477 90 15 0 chrX 80754650 80754717 -81845213 - Alu SINE Alu -15 295 228 3605 186 145 0 chrX 80754723 80755612 -81844318 - L1PA12 LINE L1 -3941 3644 2627 2620 109 3 8 chrX 80755614 80755980 -81843950 - THE1B LTR MaLR 0 364 1 9284 124 47 37 chrX 80755980 80757544 -81842386 - THE1B-int LTR MaLR 0 1580 1 1998 150 30 35 chrX 80757544 80757910 -81842020 - THE1B LTR MaLR 0 364 1 710 319 43 0 chrX 80757911 80758146 -81841784 + L1P LINE L1 2511 2755 -3391 1210 163 67 0 chrX 80758146 80758355 -81841575 + L1P LINE L1 4 226 -5920 2149 127 0 6 chrX 80758466 80758812 -81841118 + L1P LINE L1 3234 3577 -2569 3034 164 68 4 chrX 80758812 80759368 -81840562 - LTR1 LTR ERV1 0 785 194 1455 169 7 36 chrX 80759376 80759655 -81840275 - LTR1 LTR ERV1 -514 271 1 186 103 0 0 chrX 80759668 80759697 -81840233 + (TTCCC)n Simple_repeat Simple_repeat 2 30 0 9188 118 1 2 chrX 80759703 80761315 -81838615 + L1P LINE L1 3574 5313 -833 1310 337 35 63 chrX 80761315 80762916 -81837014 - L1PA12 LINE L1 -5458 2123 2 910 240 31 19 chrX 80762927 80763244 -81836686 + L1M4 LINE L1 4330 4650 -1496 749 225 23 9 chrX 80763224 80763442 -81836488 + L1PA13 LINE L1 1949 2169 -4618 * 1336 254 17 3 chrX 80763440 80763845 -81836085 + L1PA13 LINE L1 2555 2964 -3833 4987 172 18 17 chrX 80963850 80965018 -81634912 + L1MA10 LINE L1 4854 6183 -151 2220 92 0 41 chrX 80965018 80965332 -81634598 - AluSx SINE Alu -11 301 1 4987 172 18 17 chrX 80965332 80965479 -81634451 + L1MA10 LINE L1 6183 6328 -6 592 97 21 0 chrX 80965499 80965592 -81634338 + L1 LINE L1 5151 5245 -901 1342 102 10 0 chrX 80965694 80965890 -81634040 + L1PA14 LINE L1 5955 6152 -9 388 175 50 12 chrX 80967067 80967147 -81632783 + MIR3 SINE MIR 77 159 -49 1995 140 16 0 chrX 80968086 80968393 -81631537 - AluSx SINE Alu 0 312 1 2731 63 8 8 chrX 80968625 80968990 -81630940 + L1PA6 LINE L1 5783 6147 -7 280 294 28 28 chrX 80971755 80971898 -81628032 + MARNA DNA Mariner 327 469 -117 264 275 0 14 chrX 80976087 80976156 -81623774 - MIR SINE MIR -69 139 72 23 0 0 0 chrX 80976441 80976464 -81623466 + AT_rich Low_complexity Low_complexity 1 23 0 218 346 19 32 chrX 80976707 80976863 -81623067 - MIR SINE MIR -75 187 34 25 31 0 0 chrX 80976982 80977014 -81622916 + AT_rich Low_complexity Low_complexity 1 32 0 347 208 30 10 chrX 80977643 80977744 -81622186 - L1MA4 LINE L1 0 6300 6198 218 287 119 40 chrX 80978115 80978216 -81621714 + MER5A DNA MER1_type 81 189 0 354 333 29 14 chrX 80978478 80978616 -81621314 - MIR SINE MIR -90 172 33 1725 168 9 22 chrX 80979339 80979654 -81620276 + AluJo SINE Alu 1 311 -1 1097 116 6 0 chrX 80979654 80979827 -81620103 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 256 359 0 0 chrX 80979967 80980045 -81619885 + MIR SINE MIR 73 150 -112 29 28 0 0 chrX 80980099 80980135 -81619795 + AT_rich Low_complexity Low_complexity 1 36 0 481 296 0 0 chrX 80980920 80981045 -81618885 - L2 LINE L2 -5 3308 3184 180 265 73 29 chrX 80981442 80981510 -81618420 + MER5A DNA MER1_type 46 116 -73 638 206 41 0 chrX 80981511 80981657 -81618273 - L1MA6 LINE L1 -433 5867 5716 349 145 60 24 chrX 80981657 80981729 -81618201 + L1MA8 LINE L1 6203 6288 -3 322 304 20 54 chrX 80981763 80981911 -81618019 + MIR SINE MIR 55 197 -65 226 390 27 42 chrX 80982601 80982860 -81617070 + L2 LINE L2 2826 3080 -192 209 266 0 16 chrX 80983110 80983174 -81616756 - L2 LINE L2 -93 3220 3158 311 281 72 33 chrX 80983192 80983363 -81616567 - MIR SINE MIR -56 206 34 23 33 0 0 chrX 80983578 80983608 -81616322 + AT_rich Low_complexity Low_complexity 1 30 0 19646 185 20 19 chrX 80983753 80988483 -81611447 - L1PA13 LINE L1 0 6814 2046 2433 93 0 3 chrX 80988483 80988795 -81611135 - AluY SINE Alu 0 311 1 19646 185 20 19 chrX 80988795 80990844 -81609086 - L1PA13 LINE L1 -4768 2046 1 41 0 0 0 chrX 80991271 80991312 -81608618 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 80992007 80992029 -81607901 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 80992802 80992833 -81607097 + AT_rich Low_complexity Low_complexity 1 31 0 197 264 127 55 chrX 80992835 80992945 -81606985 - L2 LINE L2 -5 3308 3191 2093 126 0 0 chrX 80993246 80993539 -81606391 - AluSx SINE Alu -12 300 8 5602 115 7 5 chrX 80993561 80994235 -81605695 - L1PA15 LINE L1 -3 6162 5491 207 0 0 0 chrX 80994235 80994258 -81605672 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2322 81 3 0 chrX 80994258 80994542 -81605388 - AluSp SINE Alu -28 285 1 5602 115 7 5 chrX 80994542 80994694 -81605236 - L1PA15 LINE L1 -673 5492 5333 2341 111 0 0 chrX 80995016 80995323 -81604607 - AluSx SINE Alu -5 307 1 221 254 17 17 chrX 80996201 80996260 -81603670 - L2 LINE L2 -9 3304 3246 2010 178 108 11 chrX 80996281 80996726 -81603204 - MLT1D LTR MaLR 0 505 18 1957 149 0 26 chrX 80997479 80997787 -81602143 + AluSx SINE Alu 1 300 -12 237 365 61 7 chrX 80998181 80998329 -81601601 + MIR SINE MIR 31 184 -64 505 247 73 17 chrX 80999122 80999300 -81600630 + MIR SINE MIR 74 261 -1 27 49 0 0 chrX 81000506 81000547 -81599383 + AT_rich Low_complexity Low_complexity 1 41 0 1944 120 7 4 chrX 81000717 81000992 -81598938 + AluSx SINE Alu 22 297 -15 16007 86 1 0 chrX 81000993 81004006 -81595924 + L1PA7 LINE L1 3114 6141 -13 339 25 0 0 chrX 81004013 81004053 -81595877 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 279 0 0 0 chrX 81004997 81005028 -81594902 + (TA)n Simple_repeat Simple_repeat 1 31 0 201 196 0 20 chrX 81005053 81005104 -81594826 + (TTA)n Simple_repeat Simple_repeat 3 52 0 347 245 47 19 chrX 81006415 81006521 -81593409 - MIR SINE MIR -42 220 112 210 37 0 0 chrX 81007197 81007224 -81592706 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1438 95 24 0 chrX 81008010 81008220 -81591710 + L1MA3 LINE L1 6090 6304 -1 5669 231 62 97 chrX 81008679 81010223 -81589707 + L2 LINE L2 658 2255 -1058 1765 164 0 32 chrX 81010223 81010533 -81589397 + AluJo SINE Alu 3 302 -10 5669 231 62 97 chrX 81010533 81010778 -81589152 + L2 LINE L2 2255 2507 -806 1903 137 10 23 chrX 81010778 81011085 -81588845 + AluJo SINE Alu 1 303 -9 5669 231 62 97 chrX 81011085 81012047 -81587883 + L2 LINE L2 2507 3313 0 357 314 71 36 chrX 81012600 81012740 -81587190 + MIR SINE MIR 40 184 -78 3238 198 58 40 chrX 81013294 81014042 -81585888 + L1MA1 LINE L1 18 778 -6787 624 141 0 10 chrX 81014050 81014149 -81585781 + MER4A LTR ERV1 1 98 -566 2033 117 3 19 chrX 81014149 81014499 -81585431 + MER4A LTR ERV1 261 664 0 12765 168 79 4 chrX 81014499 81020003 -81579927 + L1MA1 LINE L1 1259 7202 -519 5793 108 16 12 chrX 81020003 81021773 -81578157 + L1PA14 LINE L1 4386 6160 -1 3714 91 8 0 chrX 81021773 81022296 -81577634 + L1MA1 LINE L1 7188 7717 -4 180 135 0 0 chrX 81023098 81023135 -81576795 + (A)n Simple_repeat Simple_repeat 1 37 0 523 58 0 0 chrX 81023209 81023278 -81576652 + MER41A LTR ERV1 400 468 -86 25 51 0 0 chrX 81025283 81025322 -81574608 + AT_rich Low_complexity Low_complexity 1 39 0 308 173 0 53 chrX 81025522 81025597 -81574333 + L2 LINE L2 3243 3313 0 283 255 49 59 chrX 81026548 81026650 -81573280 + L2 LINE L2 3197 3297 -16 258 32 0 0 chrX 81026656 81026687 -81573243 + (CA)n Simple_repeat Simple_repeat 2 32 0 368 127 0 0 chrX 81026832 81026895 -81573035 + Alu SINE Alu 240 302 0 23 0 0 0 chrX 81027992 81028015 -81571915 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chrX 81029837 81029868 -81570062 + AT_rich Low_complexity Low_complexity 1 31 0 223 176 15 44 chrX 81034255 81034323 -81565607 + GA-rich Low_complexity Low_complexity 2 67 0 203 171 85 0 chrX 81035495 81035577 -81564353 + (CA)n Simple_repeat Simple_repeat 1 89 0 1254 110 30 198 chrX 81037857 81038220 -81561710 - AluYb8 SINE Alu -16 302 1 858 239 17 0 chrX 81041359 81041539 -81558391 + MER5A DNA MER1_type 6 188 -1 470 301 156 63 chrX 81041634 81042487 -81557443 + L2 LINE L2 1865 2796 -518 186 71 0 0 chrX 81042508 81042536 -81557394 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2223 90 0 0 chrX 81042536 81042813 -81557117 - AluSg SINE Alu -33 277 1 263 389 16 0 chrX 81043176 81043302 -81556628 + L2 LINE L2 3186 3313 0 28 0 0 0 chrX 81043472 81043500 -81556430 + AT_rich Low_complexity Low_complexity 1 28 0 554 331 41 0 chrX 81044219 81044464 -81555466 - MIR SINE MIR -4 258 4 2310 92 0 0 chrX 81044526 81044818 -81555112 - AluY SINE Alu -19 292 1 942 224 12 67 chrX 81045384 81045638 -81554292 + MIR SINE MIR 2 241 -21 2293 73 16 7 chrX 81048184 81048487 -81551443 + AluSg SINE Alu 1 306 -4 638 135 10 0 chrX 81049751 81049855 -81550075 - MER53 DNA DNA -84 105 1 294 306 59 0 chrX 81049861 81049946 -81549984 - L2 LINE L2 -213 3059 2970 22 0 0 0 chrX 81051322 81051344 -81548586 + AT_rich Low_complexity Low_complexity 1 22 0 1508 141 7 67 chrX 81052657 81052926 -81547004 + AluSx SINE Alu 42 294 -18 244 195 161 58 chrX 81053990 81054077 -81545853 + MER5A DNA MER1_type 46 141 -48 2220 263 74 31 chrX 81054088 81054142 -81545788 - HAL1 LINE L1 -1 2506 2456 2043 124 7 13 chrX 81054142 81054440 -81545490 + AluSx SINE Alu 6 301 -11 2220 263 74 31 chrX 81054440 81055227 -81544703 - HAL1 LINE L1 -51 2456 1629 591 244 81 47 chrX 81055226 81055460 -81544470 + HAL1 LINE L1 791 1032 -1475 * 234 204 20 0 chrX 81055461 81055510 -81544420 + MER21B LTR ERV1 329 378 -485 1879 149 9 19 chrX 81056376 81056691 -81543239 + AluJb SINE Alu 1 312 0 24 67 0 0 chrX 81057249 81057294 -81542636 + AT_rich Low_complexity Low_complexity 1 45 0 345 282 8 26 chrX 81057542 81057659 -81542271 + HAL1 LINE L1 884 998 -1509 5561 248 90 20 chrX 81058024 81059791 -81540139 + L1PA12 LINE L1 1 1890 -5691 8777 208 14 35 chrX 81059801 81062590 -81537340 + L1PA12 LINE L1 2676 5353 -2231 1065 157 5 0 chrX 81062586 81062771 -81537159 + L1PBa LINE L1 15 200 -6663 * 9696 146 34 3 chrX 81062771 81065846 -81534084 + L1PBa LINE L1 634 3926 -2936 40449 39 21 1 chrX 81065856 81071919 -81528011 + L1PA3 LINE L1 1 6187 0 307 343 67 0 chrX 81071929 81072063 -81527867 + L1M4 LINE L1 3685 3827 -2319 755 189 0 0 chrX 81072177 81072309 -81527621 + AluSq/x SINE Alu 2 133 -180 21 0 0 0 chrX 81072347 81072368 -81527562 + AT_rich Low_complexity Low_complexity 1 21 0 1328 273 99 20 chrX 81072442 81073148 -81526782 + L1M4 LINE L1 3874 4635 -1511 2169 125 14 0 chrX 81073152 81073447 -81526483 - AluSx SINE Alu -13 299 1 1342 291 63 9 chrX 81073528 81074271 -81525659 - L1M4 LINE L1 -2277 5288 4506 224 0 65 0 chrX 81074276 81074307 -81525623 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 6614 165 23 24 chrX 81074317 81076498 -81523432 - L1MA1 LINE L1 -24 6278 4095 1758 152 73 20 chrX 81076498 81076854 -81523076 + THE1C LTR MaLR 1 375 0 9843 110 39 39 chrX 81076854 81078435 -81521495 + THE1C-int LTR MaLR 1 1580 0 1941 150 65 8 chrX 81078437 81078790 -81521140 + THE1C LTR MaLR 3 375 0 6614 165 23 24 chrX 81078790 81079025 -81520905 - L1MA1 LINE L1 -2207 4095 3862 1698 229 17 23 chrX 81079025 81079496 -81520434 - L1M4 LINE L1 -3204 4361 3894 900 183 27 43 chrX 81079497 81079754 -81520176 - L1M4 LINE L1 -4103 3462 3210 1719 210 7 7 chrX 81079754 81080064 -81519866 - AluJb SINE Alu 0 312 3 16983 174 28 30 chrX 81080067 81083524 -81516406 - L1M4 LINE L1 -3990 3575 143 2375 72 0 0 chrX 81083524 81083815 -81516115 - AluY SINE Alu -1 310 20 16983 174 28 30 chrX 81083815 81083940 -81515990 - L1M4 LINE L1 -7422 143 19 586 295 42 5 chrX 81084166 81084359 -81515571 + L3 LINE CR1 1209 1408 -169 594 298 53 55 chrX 81084417 81084850 -81515080 + L1MC4a LINE L1 5576 6007 -1801 390 314 48 0 chrX 81084989 81085113 -81514817 + L3 LINE CR1 562 691 -886 2018 152 3 3 chrX 81085142 81085451 -81514479 + AluJb SINE Alu 1 309 -3 2345 95 7 3 chrX 81085660 81085965 -81513965 + AluSq SINE Alu 1 306 -7 27 49 0 0 chrX 81086880 81086921 -81513009 + AT_rich Low_complexity Low_complexity 1 41 0 483 60 0 0 chrX 81087663 81087730 -81512200 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 278 151 0 116 chrX 81088581 81088625 -81511305 + L1MA9 LINE L1 6215 6246 -66 1459 93 65 5 chrX 81088625 81088840 -81511090 - MER30 DNA MER1_type 0 230 3 278 151 0 116 chrX 81088840 81088881 -81511049 + L1MA9 LINE L1 6246 6290 -22 2041 108 20 7 chrX 81089333 81089628 -81510302 + AluSq SINE Alu 1 299 -14 2026 147 14 77 chrX 81089940 81090355 -81509575 + MLT1B LTR MaLR 2 390 0 318 363 62 0 chrX 81090463 81090576 -81509354 - L2 LINE L2 -5 3267 3148 270 390 24 16 chrX 81090738 81090861 -81509069 - L2 LINE L2 -189 3083 2960 1939 175 3 0 chrX 81091872 81092180 -81507750 - AluJo SINE Alu -2 310 2 3095 192 41 10 chrX 81093641 81094319 -81505611 + L1PA13 LINE L1 1289 1987 -4800 222 62 0 0 chrX 81094344 81094376 -81505554 + (TAG)n Simple_repeat Simple_repeat 1 32 0 2281 101 0 0 chrX 81094379 81094665 -81505265 - AluSq SINE Alu -27 286 1 939 113 14 0 chrX 81094685 81094827 -81505103 - L1PB1 LINE L1 -5 6146 6003 1635 135 45 85 chrX 81094841 81095218 -81504712 + THE1C LTR MaLR 14 375 0 1479 97 5 0 chrX 81095218 81095434 -81504496 - L1PB1 LINE L1 -144 6007 5791 332 153 47 0 chrX 81095437 81095522 -81504408 + (TG)n Simple_repeat Simple_repeat 2 90 0 219 116 0 47 chrX 81095522 81095565 -81504365 + (TA)n Simple_repeat Simple_repeat 1 41 0 7720 179 19 12 chrX 81095565 81097930 -81502000 - L1PB1 LINE L1 -347 5804 3431 2404 109 78 98 chrX 81097929 81097945 -81501985 - THE1C-int LTR MaLR -1083 497 482 * 1653 116 0 4 chrX 81097945 81098251 -81501679 - AluSc SINE Alu 0 360 56 2404 109 78 98 chrX 81098251 81098760 -81501170 - THE1C-int LTR MaLR -1098 482 1 323 122 0 0 chrX 81098760 81098809 -81501121 - THE1C LTR MaLR 0 428 380 258 32 0 0 chrX 81100912 81100943 -81498987 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1509 168 33 27 chrX 81100943 81101276 -81498654 - THE1C LTR MaLR -35 340 6 610 113 45 60 chrX 81101276 81101409 -81498521 + L1PA15 LINE L1 6034 6164 -1 2282 95 14 0 chrX 81101418 81101712 -81498218 + AluSc SINE Alu 2 299 -10 304 257 14 0 chrX 81101910 81101984 -81497946 - Charlie8 DNA MER1_type 0 2417 2343 2208 125 14 11 chrX 81102012 81102364 -81497566 + THE1A LTR MaLR 1 353 -2 11592 96 9 1 chrX 81102366 81103933 -81495997 + THE1A-int LTR MaLR 1 1580 0 2191 125 8 8 chrX 81103933 81104286 -81495644 + THE1A LTR MaLR 1 353 -2 264 260 31 62 chrX 81104294 81104390 -81495540 - Charlie8 DNA MER1_type -2019 398 306 356 298 97 18 chrX 81104531 81104810 -81495120 + L1MC5 LINE L1 7268 7568 -393 3462 139 22 2 chrX 81104867 81105456 -81494474 - L1MA4 LINE L1 -8 6292 5692 565 181 9 0 chrX 81105461 81105566 -81494364 - L1MA4 LINE L1 -663 5628 5523 260 307 36 21 chrX 81105589 81105781 -81494149 + L1MC5 LINE L1 7732 7926 -35 377 266 64 78 chrX 81105792 81106010 -81493920 + L1ME LINE L1 2 216 -5854 431 223 54 81 chrX 81106048 81106302 -81493628 + L1MC5 LINE L1 7000 7243 -728 553 254 92 69 chrX 81106413 81107019 -81492911 + L1MC5 LINE L1 7260 7879 -82 765 189 110 12 chrX 81107019 81107183 -81492747 - AluJo SINE Alu -15 297 118 451 183 0 0 chrX 81107983 81108076 -81491854 - L1PA16 LINE L1 -3 6163 6071 419 302 101 22 chrX 81108088 81108267 -81491663 + L1ME LINE L1 269 461 -5609 696 224 9 61 chrX 81108341 81108555 -81491375 + L1ME LINE L1 467 669 -5401 * 7198 31 0 0 chrX 81108544 81109406 -81490524 - L1PA3 LINE L1 -1623 4523 3662 7553 31 1 0 chrX 81109407 81111008 -81488922 + L1PA3 LINE L1 4553 6155 0 1121 274 59 72 chrX 81111010 81111351 -81488579 + L1ME LINE L1 701 1045 -5035 2114 106 21 0 chrX 81111351 81111635 -81488295 + AluSp SINE Alu 3 292 -21 1121 274 59 72 chrX 81111635 81111919 -81488011 + L1ME LINE L1 1045 1331 -4749 2225 138 8 11 chrX 81111919 81112290 -81487640 + L1PA15 LINE L1 5796 6165 0 1121 274 59 72 chrX 81112290 81112930 -81487000 + L1ME LINE L1 1331 1874 -4206 1365 179 36 29 chrX 81112930 81113210 -81486720 + AluJb SINE Alu 1 282 -30 1121 274 59 72 chrX 81113210 81113815 -81486115 + L1ME LINE L1 1874 2485 -3595 889 234 86 94 chrX 81113818 81114212 -81485718 - MLT1F1 LTR MaLR 0 567 177 7275 133 14 25 chrX 81114865 81116020 -81483910 - L1PA11 LINE L1 -2 6172 5041 4773 40 7 25 chrX 81116020 81116515 -81483415 - LTR10C LTR ERV1 0 591 107 2368 81 0 7 chrX 81116515 81116811 -81483119 + AluY SINE Alu 2 295 -16 4773 40 7 25 chrX 81116811 81116914 -81483016 - LTR10C LTR ERV1 -484 107 4 7275 133 14 25 chrX 81116914 81117841 -81482089 - L1PA11 LINE L1 -1133 5041 4106 891 146 20 134 chrX 81117841 81118087 -81481843 - MER20 DNA MER1_type 0 219 2 544 215 93 53 chrX 81118095 81118341 -81481589 - MER112 DNA MER1_type 0 256 1 2091 98 4 7 chrX 81119063 81119340 -81480590 + AluSq SINE Alu 1 276 -37 290 210 54 151 chrX 81119662 81119848 -81480082 - MER5C DNA MER1_type 0 324 157 1384 155 7 48 chrX 81119853 81120143 -81479787 - L1MA9 LINE L1 -3 6309 6032 1515 166 34 128 chrX 81120145 81120560 -81479370 + L1MA6 LINE L1 5654 6029 -271 565 120 130 0 chrX 81120568 81120676 -81479254 - MER5C DNA MER1_type -165 159 38 1834 192 64 139 chrX 81120780 81121342 -81478588 + MER50 LTR ERV1 1 488 -246 608 40 0 0 chrX 81121342 81121417 -81478513 - L1PA5 LINE L1 -8 6146 6072 1834 192 64 139 chrX 81121417 81121647 -81478283 + MER50 LTR ERV1 488 734 0 576 270 0 0 chrX 81122464 81122579 -81477351 + L2 LINE L2 3156 3270 -2 653 198 16 0 chrX 81122730 81122856 -81477074 + MER63A DNA MER1_type 83 210 0 440 232 0 71 chrX 81123037 81123149 -81476781 + MER5A DNA MER1_type 4 107 -82 1748 105 4 19 chrX 81123174 81123651 -81476279 - L1MA5 LINE L1 -4 6296 5767 341 200 0 0 chrX 81123654 81123714 -81476216 + MER5A DNA MER1_type 125 184 -5 760 300 105 69 chrX 81124637 81125113 -81474817 + MLT1K LTR MaLR 65 557 -31 492 252 126 76 chrX 81125686 81125924 -81474006 - MER102a DNA MER1_type -1 329 80 518 223 20 34 chrX 81126025 81126173 -81473757 - L2 LINE L2 0 3313 3168 369 314 107 0 chrX 81127802 81127942 -81471988 + MIR SINE MIR 107 261 -1 1269 286 145 5 chrX 81128210 81128644 -81471286 + LTR33 LTR ERVL 19 513 -8 615 277 164 25 chrX 81128636 81128954 -81470976 + MLT1K LTR MaLR 225 586 -2 * 188 396 100 21 chrX 81128967 81129207 -81470723 - L2 LINE L2 -190 3082 2824 2386 211 48 27 chrX 81129349 81129874 -81470056 - MLT1F LTR MaLR -6 536 1 233 325 194 25 chrX 81130180 81130340 -81469590 + L3b LINE CR1 1372 1558 -25 3614 135 25 0 chrX 81130342 81130897 -81469033 + L1PA15-16 LINE L1 705 1273 -5576 6265 46 1 3 chrX 81130898 81131665 -81468265 + L1PA5 LINE L1 5384 6149 -5 21 82 0 0 chrX 81132863 81132912 -81467018 + AT_rich Low_complexity Low_complexity 1 49 0 240 35 0 0 chrX 81133447 81133476 -81466454 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2125 233 20 4 chrX 81134101 81134638 -81465292 + L1PA15-16 LINE L1 1840 2385 -4464 2530 52 0 0 chrX 81134641 81134947 -81464983 + AluY SINE Alu 1 306 -5 695 230 20 13 chrX 81135304 81135456 -81464474 + L2 LINE L2 3161 3313 0 250 355 13 0 chrX 81136168 81136244 -81463686 - L2 LINE L2 -9 3263 3187 220 303 129 8 chrX 81136425 81136557 -81463373 - L2 LINE L2 -235 3037 2890 545 249 81 54 chrX 81138737 81138958 -81460972 - MIR SINE MIR 0 262 36 329 294 22 59 chrX 81138991 81139127 -81460803 + MIR3 SINE MIR 38 168 -40 914 174 12 6 chrX 81141310 81141471 -81458459 + AluSg/x SINE Alu 132 293 -16 1776 158 0 63 chrX 81141479 81141795 -81458135 + AluJo SINE Alu 1 296 -16 340 295 9 36 chrX 81141961 81142073 -81457857 + MIR3 SINE MIR 83 191 -17 2139 147 56 27 chrX 81142198 81142360 -81457570 + MSTB LTR MaLR 1 157 -269 1755 176 0 23 chrX 81142360 81142667 -81457263 - AluJo SINE Alu -10 302 3 2139 147 56 27 chrX 81142667 81142918 -81457012 + MSTB LTR MaLR 157 426 0 291 194 333 21 chrX 81143314 81143458 -81456472 - MER112 DNA MER1_type -6 254 66 240 104 0 0 chrX 81143441 81143489 -81456441 - LTR66 LTR ERVL -171 439 392 * 191 188 21 0 chrX 81143489 81143537 -81456393 + (TA)n Simple_repeat Simple_repeat 1 49 0 1810 186 93 120 chrX 81144668 81145632 -81454298 - LTR1B LTR ERV1 0 1020 1 180 0 0 0 chrX 81145674 81145694 -81454236 + (T)n Simple_repeat Simple_repeat 1 20 0 448 235 66 29 chrX 81146050 81146186 -81453744 - MIR SINE MIR -16 246 106 1631 133 113 27 chrX 81146600 81147154 -81452776 - MER4A LTR ERV1 0 664 1 2293 118 0 0 chrX 81147788 81148101 -81451829 + AluSq SINE Alu 1 313 0 664 188 56 88 chrX 81148245 81148358 -81451572 - L1MC5 LINE L1 -36 7925 7810 5773 52 13 23 chrX 81148358 81149112 -81450818 + MER4E LTR ERV1 1 748 -18 2498 75 0 0 chrX 81149112 81149417 -81450513 + AluY SINE Alu 1 305 -6 5773 52 13 23 chrX 81149417 81149436 -81450494 + MER4E LTR ERV1 748 766 0 664 188 56 88 chrX 81149436 81149572 -81450358 - L1MC5 LINE L1 -151 7810 7684 2192 100 4 0 chrX 81150396 81150706 -81449224 - AluSq SINE Alu 0 311 1 411 257 34 91 chrX 81150989 81151164 -81448766 - MIR3 SINE MIR -21 187 23 26 0 0 0 chrX 81151216 81151242 -81448688 + AT_rich Low_complexity Low_complexity 1 26 0 225 309 79 40 chrX 81152769 81152895 -81447035 - MIR SINE MIR -6 256 126 2398 72 3 0 chrX 81153352 81153645 -81446285 - AluSp SINE Alu -18 295 2 1655 154 0 3 chrX 81153857 81154143 -81445787 - L1MB1 LINE L1 -1 6167 5883 975 175 5 30 chrX 81154144 81154344 -81445586 + L1MB1 LINE L1 5695 5889 -295 199 233 0 0 chrX 81154721 81154764 -81445166 - L2 LINE L2 -1 3312 3270 530 276 48 14 chrX 81155317 81155462 -81444468 - MIR SINE MIR -89 173 24 369 235 137 0 chrX 81155584 81155686 -81444244 + MIR SINE MIR 91 206 -56 21 36 0 0 chrX 81156447 81156475 -81443455 + AT_rich Low_complexity Low_complexity 1 28 0 2308 80 7 0 chrX 81157144 81157433 -81442497 + AluSc SINE Alu 1 291 -18 205 280 0 0 chrX 81157771 81157821 -81442109 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 2157 106 9 37 chrX 81158774 81159095 -81440835 + AluSx SINE Alu 1 312 0 494 329 19 0 chrX 81159254 81159415 -81440515 - MIR SINE MIR -14 248 85 1702 190 43 3 chrX 81159468 81159798 -81440132 - AluJo SINE Alu 0 342 1 266 302 173 14 chrX 81160151 81160290 -81439640 + L2 LINE L2 2216 2376 -938 206 320 299 0 chrX 81160561 81160708 -81439222 + L2 LINE L2 2566 2756 -558 553 303 83 92 chrX 81160886 81161355 -81438575 + L2 LINE L2 2808 3272 0 811 336 96 57 chrX 81161538 81162726 -81437204 - L2 LINE L2 -3 3269 2029 22 0 0 0 chrX 81162990 81163012 -81436918 + AT_rich Low_complexity Low_complexity 1 22 0 3339 158 11 24 chrX 81163020 81163636 -81436294 - L1MB2 LINE L1 -27 6144 5537 731 202 32 134 chrX 81163671 81163924 -81436006 + MIR SINE MIR 28 254 -8 363 94 19 0 chrX 81163960 81164013 -81435917 - MER46A DNA MER2_type 0 236 183 273 119 0 0 chrX 81164013 81164055 -81435875 + (TA)n Simple_repeat Simple_repeat 2 43 0 265 256 0 0 chrX 81164055 81164145 -81435785 + L1MC4 LINE L1 6614 6703 -1339 341 168 5 58 chrX 81164152 81164342 -81435588 + (TA)n Simple_repeat Simple_repeat 1 180 0 405 67 0 50 chrX 81164430 81164490 -81435440 - MER46A DNA MER2_type 0 236 180 345 184 40 46 chrX 81164530 81164704 -81435226 + (TA)n Simple_repeat Simple_repeat 2 174 0 920 173 45 0 chrX 81164704 81164860 -81435070 - MER46A DNA MER2_type -70 166 4 275 330 143 35 chrX 81164890 81165148 -81434782 - L2 LINE L2 -173 3099 2814 308 283 136 27 chrX 81165199 81165383 -81434547 + L2 LINE L2 2456 2659 -655 760 48 0 57 chrX 81165492 81165597 -81434333 - HY3 scRNA scRNA -2 99 1 540 236 178 25 chrX 81165606 81166039 -81433891 - L1MEd LINE L1 -2846 3283 2785 3675 178 42 25 chrX 81166242 81167044 -81432886 - L1MD1 LINE L1 -165 6077 5262 239 300 10 30 chrX 81167083 81167183 -81432747 - L1MEd LINE L1 -3325 2804 2707 315 284 91 25 chrX 81167272 81167515 -81432415 - L1MEd LINE L1 -3572 2557 2299 2457 101 8 8 chrX 81167517 81167872 -81432058 - THE1A LTR MaLR 0 355 1 11546 88 7 9 chrX 81167872 81169050 -81430880 - THE1A-int LTR MaLR 0 1580 404 2135 118 0 7 chrX 81169050 81169354 -81430576 - AluSx SINE Alu -10 302 1 11546 88 7 9 chrX 81169354 81169758 -81430172 - THE1A-int LTR MaLR -1176 404 1 2349 98 50 0 chrX 81169758 81170096 -81429834 - THE1A LTR MaLR 0 355 1 450 171 12 0 chrX 81170419 81170501 -81429429 - AluSg1 SINE Alu -226 83 1 228 232 0 36 chrX 81170547 81170603 -81429327 - LTR27 LTR ERV1 0 636 583 474 289 108 70 chrX 81170614 81171115 -81428815 - L1MEd LINE L1 -852 1638 1158 866 211 134 0 chrX 81171115 81171309 -81428621 + MER58A DNA MER1_type 4 223 -1 474 289 108 70 chrX 81171309 81171448 -81428482 - L1MEd LINE L1 -1332 1158 1026 2158 115 0 10 chrX 81171448 81171753 -81428177 - AluSc SINE Alu -7 302 1 474 289 108 70 chrX 81171753 81171800 -81428130 - L1MEd LINE L1 -1464 1026 982 2198 194 74 52 chrX 81171800 81172419 -81427511 - LTR27 LTR ERV1 -1 635 3 474 289 108 70 chrX 81172419 81172448 -81427482 - L1MEd LINE L1 -1508 982 956 1304 191 121 67 chrX 81172448 81172929 -81427001 - MER84 LTR ERV1 0 507 1 474 289 108 70 chrX 81172929 81173127 -81426803 - L1MEd LINE L1 -1534 956 767 2445 190 43 4 chrX 81173127 81173611 -81426319 - MLT1D LTR MaLR -1 504 2 474 289 108 70 chrX 81173611 81173759 -81426171 - L1MEd LINE L1 -1723 767 435 399 332 71 64 chrX 81173851 81174134 -81425796 + L2 LINE L2 2987 3271 -1 246 362 43 0 chrX 81174291 81174385 -81425545 - MIR SINE MIR -93 115 18 877 191 24 123 chrX 81174635 81174838 -81425092 - L1MD3 LINE L1 -8 7987 7820 3131 47 2 42 chrX 81174838 81175263 -81424667 - L1PA6 LINE L1 0 6154 5747 877 191 24 123 chrX 81175263 81175352 -81424578 - L1MD3 LINE L1 -175 7820 7724 327 206 15 0 chrX 81175460 81175528 -81424402 - L1MD3 LINE L1 -1190 6805 6737 244 213 0 0 chrX 81175805 81175852 -81424078 + L2 LINE L2 3265 3311 -2 870 209 122 0 chrX 81176334 81176530 -81423400 + MER58A DNA MER1_type 2 221 -3 28 48 0 0 chrX 81176630 81176672 -81423258 + AT_rich Low_complexity Low_complexity 1 42 0 36682 79 33 7 chrX 81176789 81182770 -81417160 - L1PA6 LINE L1 -5 6149 11 239 292 100 8 chrX 81183007 81183127 -81416803 - MLT1J2 LTR MaLR -223 227 97 266 88 0 0 chrX 81183248 81183282 -81416648 - tRNA-Gln-CAG tRNA tRNA -37 38 5 2431 166 24 2 chrX 81183408 81183824 -81416106 + MSTB LTR MaLR 1 425 -1 242 290 75 19 chrX 81183854 81183961 -81415969 - L1ME LINE L1 -372 5790 5678 3961 128 52 19 chrX 81184076 81184794 -81415136 - L1MA4 LINE L1 -11 6289 5549 2048 204 40 2 chrX 81186364 81186766 -81413164 + MER47B DNA MER2_type 2 418 0 30 27 0 0 chrX 81187041 81187078 -81412852 + AT_rich Low_complexity Low_complexity 1 37 0 1984 124 21 0 chrX 81187246 81187528 -81412402 - AluSx SINE Alu -21 291 4 523 164 209 15 chrX 81188100 81188246 -81411684 - MER4C LTR ERV1 -9 655 282 1787 90 106 133 chrX 81188267 81188702 -81411228 - MER4A LTR ERV1 -241 423 1 668 293 74 13 chrX 81189442 81189671 -81410259 - MIR SINE MIR 0 262 20 237 315 163 0 chrX 81189714 81189880 -81410050 + MIR SINE MIR 30 228 -34 243 0 0 0 chrX 81189917 81189944 -81409986 + (T)n Simple_repeat Simple_repeat 1 27 0 324 301 6 46 chrX 81190919 81191086 -81408844 - MIR SINE MIR -16 246 31 799 351 65 67 chrX 81191139 81192192 -81407738 - L2 LINE L2 -52 3220 2175 268 182 0 30 chrX 81192424 81192490 -81407440 + L1MA8 LINE L1 6225 6288 -3 472 274 47 32 chrX 81193132 81193322 -81406608 + MIR SINE MIR 1 193 -69 408 183 18 122 chrX 81193458 81193622 -81406308 - MER103 DNA DNA -7 159 13 288 305 32 47 chrX 81193832 81194009 -81405921 + MIR SINE MIR 30 206 -56 11532 171 14 2 chrX 81194709 81197674 -81402256 - L1PA14 LINE L1 -2 7597 4594 13834 164 16 6 chrX 81197674 81200261 -81399669 - L1PA14 LINE L1 -4275 3309 413 2345 205 111 41 chrX 81200284 81200973 -81398957 - L1ME2 LINE L1 -185 5979 5220 2256 113 0 0 chrX 81200973 81201282 -81398648 - AluSq SINE Alu -1 312 4 2345 205 111 41 chrX 81201282 81201459 -81398471 - L1ME2 LINE L1 -944 5220 5057 685 194 8 0 chrX 81202224 81202348 -81397582 - FLAM_A SINE Alu -8 125 1 264 77 0 0 chrX 81202933 81202972 -81396958 + (TGG)n Simple_repeat Simple_repeat 1 39 0 2400 97 0 0 chrX 81203674 81203974 -81395956 + AluSx SINE Alu 4 303 -9 208 277 169 0 chrX 81204616 81204681 -81395249 - MIR SINE MIR -5 257 182 324 261 35 116 chrX 81206640 81206839 -81393091 - MIR SINE MIR -48 214 32 408 20 0 0 chrX 81208290 81208339 -81391591 + (TG)n Simple_repeat Simple_repeat 2 50 0 400 293 69 69 chrX 81208391 81208565 -81391365 + MIR3 SINE MIR 21 194 -14 2437 61 0 7 chrX 81208568 81208864 -81391066 - AluY SINE Alu -17 294 1 3915 212 69 22 chrX 81209394 81211283 -81388647 - L1MD2 LINE L1 -213 6146 4164 2425 91 0 0 chrX 81211877 81212186 -81387744 - AluSc SINE Alu 0 309 1 6878 123 124 103 chrX 81212283 81213945 -81385985 + pTR5 LTR ERV1 743 2438 0 21 57 0 0 chrX 81214105 81214140 -81385790 + AT_rich Low_complexity Low_complexity 1 35 0 4655 121 42 11 chrX 81214973 81215731 -81384199 - L1MA6 LINE L1 -5 6295 5514 749 297 104 42 chrX 81216429 81216813 -81383117 - MLT1L LTR MaLR -207 408 1 280 214 0 18 chrX 81217606 81217662 -81382268 + Tigger5 DNA MER2_type 2 56 -2267 447 92 184 0 chrX 81217668 81217744 -81382186 + Tigger5 DNA MER2_type 2234 2323 0 2262 104 3 0 chrX 81218837 81219136 -81380794 - AluSq SINE Alu -13 300 1 251 275 121 54 chrX 81219172 81219321 -81380609 - MIR SINE MIR -46 216 58 548 228 47 53 chrX 81220621 81220792 -81379138 - MIR SINE MIR -2 260 91 252 320 31 55 chrX 81220794 81220922 -81379008 - MIR SINE MIR -131 131 7 1346 56 13 125 chrX 81221970 81222202 -81377728 + L1PA7 LINE L1 5948 6153 -1 2398 87 0 0 chrX 81223761 81224061 -81375869 - AluSc SINE Alu -6 303 4 2146 110 7 7 chrX 81224478 81224779 -81375151 + AluSx SINE Alu 1 301 -11 830 235 87 45 chrX 81225769 81226080 -81373850 - MER46C DNA MER2_type -14 324 1 1645 114 23 30 chrX 81226554 81226818 -81373112 - LTR49-int LTR ERV1 -6069 262 1 744 124 16 8 chrX 81226820 81226949 -81372981 - LTR49 LTR ERV1 0 595 466 693 166 7 22 chrX 81227461 81227600 -81372330 - MER3 DNA MER1_type 0 209 73 23 33 0 0 chrX 81227637 81227667 -81372263 + AT_rich Low_complexity Low_complexity 1 30 0 245 285 38 23 chrX 81227816 81227920 -81372010 + MIR SINE MIR 6 116 -92 21 57 0 0 chrX 81228164 81228199 -81371731 + AT_rich Low_complexity Low_complexity 1 35 0 814 289 107 41 chrX 81229270 81229803 -81370127 - L1ME2 LINE L1 -279 5885 5318 6509 150 10 11 chrX 81229809 81230289 -81369641 - L1MA2 LINE L1 0 7723 7244 2186 125 0 0 chrX 81230289 81230592 -81369338 - AluSg SINE Alu -7 303 1 6509 150 10 11 chrX 81230592 81232227 -81367703 - L1MA2 LINE L1 -479 7244 5607 7087 190 25 5 chrX 81232230 81233553 -81366377 - L1MA2 LINE L1 -6204 1361 13 228 229 64 9 chrX 81233561 81233670 -81366260 - L1ME2 LINE L1 -814 5332 5218 325 273 23 34 chrX 81233781 81233869 -81366061 + MIR SINE MIR 34 120 -142 22 0 0 0 chrX 81234046 81234068 -81365862 + AT_rich Low_complexity Low_complexity 1 22 0 668 291 103 40 chrX 81234082 81234424 -81365506 - L1MEd LINE L1 -4549 1580 1261 317 106 152 15 chrX 81234424 81234490 -81365440 + MER116 DNA Mariner 2 76 -4 668 291 103 40 chrX 81234490 81234975 -81364955 - L1MEd LINE L1 -4868 1261 683 198 0 0 0 chrX 81234975 81234997 -81364933 + (TG)n Simple_repeat Simple_repeat 1 22 0 668 291 103 40 chrX 81234997 81235129 -81364801 - L1MEd LINE L1 -5446 683 561 288 0 0 0 chrX 81235193 81235225 -81364705 + (TA)n Simple_repeat Simple_repeat 2 33 0 334 48 0 0 chrX 81236149 81236191 -81363739 + AluY SINE Alu 2 43 -256 293 90 75 45 chrX 81237484 81237551 -81362379 - L1PA15 LINE L1 0 6165 6097 2800 125 17 5 chrX 81237555 81237971 -81361959 - MSTA LTR MaLR 0 428 8 8104 175 70 8 chrX 81237974 81239529 -81360401 - MSTA-int LTR MaLR 0 1651 1 2570 138 9 41 chrX 81239529 81239971 -81359959 - MSTA LTR MaLR 0 428 1 3840 126 10 15 chrX 81239971 81240573 -81359357 - L1PA15 LINE L1 -75 6090 5492 402 202 8 34 chrX 81241486 81241605 -81358325 + MER69 DNA AcHobo 2307 2422 -104 2014 18 14 57 chrX 81241860 81242139 -81357791 - L1P LINE L1 -751 5395 5129 2484 36 0 7 chrX 81242139 81242446 -81357484 + L1PA4 LINE L1 5851 6155 0 21 0 0 0 chrX 81242809 81242830 -81357100 + AT_rich Low_complexity Low_complexity 1 21 0 719 229 108 25 chrX 81243060 81243300 -81356630 + MIR SINE MIR 3 262 0 180 0 0 0 chrX 81243336 81243356 -81356574 + (CTG)n Simple_repeat Simple_repeat 1 20 0 496 239 150 42 chrX 81243422 81243589 -81356341 - MER58A DNA MER1_type -1 223 39 203 289 0 0 chrX 81243682 81243734 -81356196 + L2 LINE L2 3262 3313 0 220 336 55 16 chrX 81243812 81243940 -81355990 + MER5A DNA MER1_type 57 189 0 191 293 0 66 chrX 81244079 81244185 -81355745 - L2 LINE L2 -1 3312 3214 942 183 13 57 chrX 81244535 81244764 -81355166 - MER20 DNA MER1_type 0 219 1 1832 133 154 24 chrX 81244880 81245257 -81354673 + MSTA LTR MaLR 1 426 -2 2231 150 0 6 chrX 81245956 81246296 -81353634 - MER7A DNA MER2_type -6 340 5 2017 123 7 23 chrX 81247341 81247649 -81352281 - AluSx SINE Alu -9 303 1 2364 74 7 3 chrX 81247922 81248219 -81351711 - AluSc SINE Alu -11 298 1 307 311 30 61 chrX 81248663 81248827 -81351103 + MIR SINE MIR 49 207 -55 217 226 0 38 chrX 81249163 81249216 -81350714 + L2 LINE L2 3254 3304 -9 1937 155 35 15 chrX 81249467 81249808 -81350122 + MER7A DNA MER2_type 1 346 0 1982 188 56 15 chrX 81249809 81250218 -81349712 + MSTB LTR MaLR 1 426 0 3802 65 11 21 chrX 81250398 81250924 -81349006 + L1PA5 LINE L1 5633 6153 -1 2345 97 0 0 chrX 81250924 81251224 -81348706 + AluY SINE Alu 1 300 -11 750 242 200 19 chrX 81251691 81251906 -81348024 + MIR SINE MIR 4 257 -5 933 178 35 0 chrX 81251971 81252140 -81347790 - FAM SINE Alu 0 175 1 29 0 0 0 chrX 81254041 81254070 -81345860 + AT_rich Low_complexity Low_complexity 1 29 0 2202 111 13 0 chrX 81255086 81255384 -81344546 - AluSx SINE Alu -10 302 1 402 254 93 109 chrX 81255588 81255974 -81343956 - L2 LINE L2 -4 3309 2930 22 35 0 0 chrX 81256325 81256354 -81343576 + AT_rich Low_complexity Low_complexity 1 29 0 2348 88 3 0 chrX 81256635 81256943 -81342987 - AluSx SINE Alu -3 309 1 21 0 0 0 chrX 81256944 81256965 -81342965 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chrX 81257958 81257989 -81341941 + AT_rich Low_complexity Low_complexity 1 31 0 39 0 0 0 chrX 81258368 81258407 -81341523 + AT_rich Low_complexity Low_complexity 1 39 0 1252 312 56 19 chrX 81260856 81261647 -81338283 + L2 LINE L2 2494 3313 0 753 207 155 16 chrX 81261896 81262089 -81337841 - MIR SINE MIR -13 249 30 323 216 68 14 chrX 81262473 81262547 -81337383 + Tigger5 DNA MER2_type 2 79 -2244 638 290 167 9 chrX 81264409 81264630 -81335300 + MIR SINE MIR 7 262 0 2554 55 0 3 chrX 81264808 81265120 -81334810 + AluY SINE Alu 1 311 0 4814 214 37 12 chrX 81266106 81267720 -81332210 - L1PA15-16 LINE L1 -3402 3395 1707 371 188 5 5 chrX 81267718 81267735 -81332195 - L1P LINE L1 -2416 3730 3714 * 8171 151 14 7 chrX 81267735 81269998 -81329932 - L1PA13 LINE L1 0 6163 3893 371 188 5 5 chrX 81269998 81270064 -81329866 - L1P LINE L1 -2431 3715 3647 1233 263 20 17 chrX 81270066 81270423 -81329507 - L1PA15-16 LINE L1 -5086 1701 1344 2078 307 19 50 chrX 81270595 81271399 -81328531 - L1PA15-16 LINE L1 -6008 779 1 1204 181 185 4 chrX 81271498 81271768 -81328162 - MLT1D LTR MaLR -2 503 185 354 45 0 0 chrX 81271808 81271852 -81328078 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2123 101 38 0 chrX 81271860 81272148 -81327782 - AluSx SINE Alu 0 312 14 769 238 48 19 chrX 81272148 81272164 -81327766 - MLT1D LTR MaLR -295 210 196 2305 93 3 7 chrX 81272164 81272474 -81327456 - AluSx SINE Alu -3 309 1 769 238 48 19 chrX 81272474 81272658 -81327272 - MLT1D LTR MaLR -309 196 1 1461 283 59 51 chrX 81272679 81273442 -81326488 - L1MEd LINE L1 -5234 885 117 771 119 0 0 chrX 81273967 81274093 -81325837 + (TA)n Simple_repeat Simple_repeat 2 127 0 189 0 0 0 chrX 81275446 81275467 -81324463 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 359 345 7 34 chrX 81275651 81275799 -81324131 - MER5A DNA MER1_type -2 187 44 241 297 26 77 chrX 81275680 81275835 -81324095 + MER5A DNA MER1_type 43 189 0 * 293 291 149 28 chrX 81276071 81276212 -81323718 + MIR3 SINE MIR 42 199 -9 200 280 53 27 chrX 81277310 81277385 -81322545 + L2 LINE L2 3235 3311 -2 2152 106 13 0 chrX 81278049 81278352 -81321578 - AluSx SINE Alu -5 307 1 207 349 47 23 chrX 81278490 81278576 -81321354 - L2 LINE L2 -18 3254 3167 716 283 71 4 chrX 81278593 81278819 -81321111 + MIR SINE MIR 17 257 -5 417 248 142 0 chrX 81279102 81279243 -81320687 - L2 LINE L2 -3 3310 3150 341 333 65 94 chrX 81279370 81279847 -81320083 + L2 LINE L2 2809 3271 -1 187 353 0 0 chrX 81279894 81279962 -81319968 - L2 LINE L2 -731 2583 2516 687 210 81 0 chrX 81280113 81280299 -81319631 + L1MA9 LINE L1 6090 6290 -22 187 343 71 29 chrX 81280335 81280475 -81319455 - L2 LINE L2 -1001 2313 2168 187 190 172 52 chrX 81281503 81281561 -81318369 + MER5A DNA MER1_type 100 164 -25 303 318 18 63 chrX 81281918 81282141 -81317789 - L1MC4 LINE L1 -1 8041 7829 408 189 45 9 chrX 81282181 81282292 -81317638 - L1ME2 LINE L1 -10 6154 6040 3022 169 72 21 chrX 81284582 81285350 -81314580 - L1MA9 LINE L1 -31 6281 5436 324 136 15 30 chrX 81285448 81285514 -81314416 - Tigger4(Zombi) DNA MER2_type -1 2730 2666 296 125 21 0 chrX 81285527 81285575 -81314355 - Tigger4(Zombi) DNA MER2_type -2682 49 1 427 314 64 32 chrX 81286274 81286462 -81313468 - L2 LINE L2 -1 3271 3078 742 340 122 10 chrX 81286551 81287131 -81312799 - L2 LINE L2 -1470 1844 1200 426 53 0 0 chrX 81287849 81287906 -81312024 + (CA)n Simple_repeat Simple_repeat 2 58 0 339 90 78 30 chrX 81287993 81288160 -81311770 + (TA)n Simple_repeat Simple_repeat 1 175 0 39 22 0 0 chrX 81288164 81288210 -81311720 + AT_rich Low_complexity Low_complexity 1 46 0 258 90 96 30 chrX 81288210 81288376 -81311554 + (TA)n Simple_repeat Simple_repeat 1 177 0 305 357 210 15 chrX 81288401 81289006 -81310924 + L2 LINE L2 2013 2735 -579 222 191 0 0 chrX 81289017 81289064 -81310866 + T-rich Low_complexity Low_complexity 1 47 0 2057 145 0 25 chrX 81289760 81290077 -81309853 + AluSx SINE Alu 1 309 -3 1116 161 118 0 chrX 81290442 81290653 -81309277 - MER46A DNA MER2_type 0 236 1 22 56 0 0 chrX 81290690 81290726 -81309204 + AT_rich Low_complexity Low_complexity 1 36 0 1593 159 23 104 chrX 81291342 81291737 -81308193 - MLT1A1 LTR MaLR -2 363 1 189 362 64 32 chrX 81292077 81292171 -81307759 - L2 LINE L2 -39 3233 3137 2716 87 0 3 chrX 81292550 81292906 -81307024 - THE1A LTR MaLR 0 355 1 11457 90 17 3 chrX 81292906 81294465 -81305465 - THE1A-int LTR MaLR 0 1580 1 2683 90 3 0 chrX 81294465 81294819 -81305111 - THE1A LTR MaLR 0 355 1 5104 138 29 0 chrX 81294997 81296042 -81303888 - L1PA16 LINE L1 -9 6157 5089 355 253 210 16 chrX 81296112 81296298 -81303632 - L1ME4a LINE L1 -19 6102 5881 1599 234 56 0 chrX 81296374 81296750 -81303180 - L1MDa LINE L1 -6128 412 16 295 256 115 51 chrX 81296749 81296905 -81303025 - L1ME4a LINE L1 -542 5579 5414 * 5683 90 3 1 chrX 81296930 81297695 -81302235 - THE1B-int LTR MaLR -814 766 1 2091 132 56 31 chrX 81297695 81298050 -81301880 - THE1B LTR MaLR 0 364 1 31 26 0 0 chrX 81299232 81299270 -81300660 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chrX 81300205 81300229 -81299701 + AT_rich Low_complexity Low_complexity 1 24 0 618 257 29 0 chrX 81300691 81300827 -81299103 + MIR SINE MIR 48 187 -75 384 250 29 0 chrX 81302190 81302294 -81297636 - MIR3 SINE MIR -11 197 91 21 36 0 0 chrX 81302701 81302729 -81297201 + AT_rich Low_complexity Low_complexity 1 28 0 773 178 178 9 chrX 81303020 81303239 -81296691 - Charlie2 DNA MER1_type -4 2858 2603 512 202 22 34 chrX 81303230 81303408 -81296522 - Charlie2 DNA MER1_type -429 2433 2258 * 545 301 80 58 chrX 81303565 81303791 -81296139 + MIR SINE MIR 1 231 -31 268 188 263 23 chrX 81306482 81306615 -81293315 + L1ME4a LINE L1 5940 6104 -17 2183 115 0 0 chrX 81306711 81307006 -81292924 - AluSx SINE Alu -17 295 1 2591 109 32 18 chrX 81307458 81307897 -81292033 - L1MA3 LINE L1 0 6305 5861 29 47 0 0 chrX 81307982 81308025 -81291905 + AT_rich Low_complexity Low_complexity 1 43 0 1152 147 29 4 chrX 81309003 81309248 -81290682 - L1MA3 LINE L1 -709 5471 5222 659 195 95 12 chrX 81309249 81309418 -81290512 - L1MA3 LINE L1 -1747 4399 4217 260 286 0 0 chrX 81311080 81311136 -81288794 - L2 LINE L2 -3 3269 3214 242 293 53 27 chrX 81311154 81311229 -81288701 + L2 LINE L2 3168 3244 -28 1115 165 60 32 chrX 81311384 81311633 -81288297 - L1MB8 LINE L1 0 6178 5923 2334 77 23 0 chrX 81313874 81314173 -81285757 - AluY SINE Alu -5 306 1 836 316 4 12 chrX 81314926 81315176 -81284754 - MIR SINE MIR -12 250 3 28 48 0 0 chrX 81315869 81315911 -81284019 + AT_rich Low_complexity Low_complexity 1 42 0 211 354 173 16 chrX 81315912 81316039 -81283891 - L2 LINE L2 -21 3251 3105 515 357 86 19 chrX 81316306 81316667 -81283263 - L2 LINE L2 -461 2853 2469 1336 104 196 0 chrX 81316873 81317103 -81282827 - L1MA9 LINE L1 -218 6094 5820 590 153 187 0 chrX 81317105 81317145 -81282785 + L1MA9 LINE L1 6113 6144 -168 318 26 0 0 chrX 81317145 81317184 -81282746 + (CA)n Simple_repeat Simple_repeat 2 40 0 590 153 187 0 chrX 81317184 81317293 -81282637 + L1MA9 LINE L1 6144 6290 -22 363 323 38 8 chrX 81317472 81317605 -81282325 - MIR SINE MIR -121 141 5 1577 152 75 39 chrX 81317744 81318106 -81281824 - THE1C LTR MaLR 0 375 1 9779 113 30 36 chrX 81318106 81319693 -81280237 - THE1C-int LTR MaLR 0 1580 4 1342 148 144 42 chrX 81319698 81320036 -81279894 - THE1C LTR MaLR -2 424 1 215 358 119 9 chrX 81321298 81321407 -81278523 + MIR SINE MIR 23 143 -65 1986 119 4 4 chrX 81321831 81322108 -81277822 + AluSx SINE Alu 21 297 -15 21 89 0 0 chrX 81324670 81324726 -81275204 + AT_rich Low_complexity Low_complexity 1 56 0 410 276 70 35 chrX 81325460 81325681 -81274249 + L1MC4a LINE L1 5370 5595 -526 686 139 61 0 chrX 81325742 81325857 -81274073 - L1PA16 LINE L1 -21 6145 6024 * 1892 180 86 50 chrX 81325855 81325981 -81273949 - L1PA7 LINE L1 0 6154 6034 234 0 0 0 chrX 81325981 81326007 -81273923 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 1892 180 86 50 chrX 81326007 81326358 -81273572 - L1PA7 LINE L1 -120 6034 5660 517 251 130 40 chrX 81326378 81326677 -81273253 + L1MC4a LINE L1 5581 5906 -1902 559 203 79 17 chrX 81327013 81327190 -81272740 + L1MC5 LINE L1 5749 5936 -1872 1258 146 0 2 chrX 81327392 81327765 -81272165 + MSTA LTR MaLR 1 428 0 452 122 14 0 chrX 81327971 81328045 -81271885 + L1MA10 LINE L1 6240 6314 -20 798 248 72 44 chrX 81328104 81328513 -81271417 + L1MC5 LINE L1 6819 7243 -733 731 244 83 49 chrX 81328514 81328880 -81271050 + L1MC5 LINE L1 7260 7415 -393 2220 104 0 50 chrX 81328892 81329210 -81270720 - AluSx SINE Alu -8 304 3 22 0 0 0 chrX 81330150 81330172 -81269758 + AT_rich Low_complexity Low_complexity 1 22 0 1079 117 20 35 chrX 81330178 81330375 -81269555 - L1MA9 LINE L1 -72 6240 6047 363 169 79 0 chrX 81330375 81330443 -81269487 + L1MA9 LINE L1 6214 6309 -3 4155 41 0 12 chrX 81330519 81331033 -81268897 - L1PA7 LINE L1 0 6154 5647 1018 180 0 0 chrX 81331154 81331326 -81268604 - FRAM SINE Alu -11 165 1 315 194 306 81 chrX 81331891 81332051 -81267879 - MIR SINE MIR -10 252 57 2185 147 3 12 chrX 81332424 81332764 -81267166 - MER1B DNA MER1_type 0 337 1 239 284 98 10 chrX 81332942 81333044 -81266886 + L2 LINE L2 3166 3276 -37 2300 181 28 51 chrX 81334211 81334776 -81265154 - L1M2 LINE L1 -1226 5622 5071 1397 96 0 0 chrX 81334780 81334979 -81264951 - L1MA2 LINE L1 -4 6300 6102 4145 106 49 0 chrX 81336268 81336900 -81263030 - L1MA2 LINE L1 -162 6142 5480 7024 47 11 0 chrX 81336905 81338141 -81261789 - L1PA7 LINE L1 -4 6150 4926 2600 83 14 0 chrX 81338133 81338485 -81261445 + L1P3 LINE L1 802 1158 -5303 5187 181 18 10 chrX 81338509 81339682 -81260248 - L1M2 LINE L1 -1779 5069 3888 338 262 48 0 chrX 81339687 81339771 -81260159 - L1MC4 LINE L1 -1341 6701 6614 267 226 36 12 chrX 81339771 81339855 -81260075 + (TA)n Simple_repeat Simple_repeat 2 87 0 787 213 4 13 chrX 81339856 81340081 -81259849 - L1M2 LINE L1 -2973 3875 3653 347 125 0 16 chrX 81340085 81340149 -81259781 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 1111 198 10 0 chrX 81340149 81340341 -81259589 - AluJo SINE Alu -118 194 1 2604 199 31 46 chrX 81340344 81340535 -81259395 - L1 LINE L1 -3200 3648 3456 1485 200 0 32 chrX 81340535 81340820 -81259110 - AluJo SINE Alu -36 276 1 2604 199 31 46 chrX 81340820 81341517 -81258413 - L1 LINE L1 -3392 3456 2777 858 153 69 9 chrX 81341517 81341733 -81258197 + L1M2 LINE L1 1665 1893 -4956 992 178 5 0 chrX 81341735 81341937 -81257993 - L1 LINE L1 -5184 1665 1463 675 46 0 0 chrX 81341939 81342026 -81257904 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 8169 211 33 23 chrX 81342027 81342652 -81257278 - L1M2 LINE L1 -4098 2751 2134 225 0 0 0 chrX 81342652 81342677 -81257253 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3060 6 3 0 chrX 81342677 81343019 -81256911 - L1PA3 LINE L1 -18 6137 5795 8169 211 33 23 chrX 81343019 81344454 -81255476 - L1M2 LINE L1 -4714 2135 816 563 291 17 23 chrX 81344458 81344630 -81255300 + MIR SINE MIR 78 248 -14 243 306 0 16 chrX 81344653 81344715 -81255215 - MIR SINE MIR -131 77 17 213 291 127 9 chrX 81345536 81345646 -81254284 + MIR SINE MIR 140 262 0 367 313 100 8 chrX 81345665 81345914 -81254016 + L1ME4a LINE L1 5839 6110 -11 309 26 0 0 chrX 81345989 81346027 -81253903 + (CA)n Simple_repeat Simple_repeat 2 39 0 570 264 90 17 chrX 81346091 81346390 -81253540 - L1MC4a LINE L1 -1913 5895 5575 236 300 33 22 chrX 81346415 81346505 -81253425 - L1MC4a LINE L1 -618 5503 5413 355 335 86 13 chrX 81346586 81346819 -81253111 - L1MC4a LINE L1 -850 5296 5047 2106 153 39 31 chrX 81346830 81347374 -81252556 + MLT2A2 LTR ERVL 1 554 0 502 321 47 34 chrX 81347444 81347830 -81252100 - L1MC4a LINE L1 -1175 4971 4581 21 71 0 0 chrX 81347873 81347915 -81252015 + AT_rich Low_complexity Low_complexity 1 42 0 287 283 43 70 chrX 81348070 81348257 -81251673 + MLT1J2 LTR MaLR 266 447 -3 996 251 60 60 chrX 81348304 81348866 -81251064 - L1MC4a LINE L1 -1772 4374 3813 21 57 0 0 chrX 81348976 81349011 -81250919 + AT_rich Low_complexity Low_complexity 1 35 0 492 283 90 34 chrX 81349267 81349500 -81250430 + MIR SINE MIR 11 256 -6 284 120 20 0 chrX 81349901 81349951 -81249979 + CT-rich Low_complexity Low_complexity 2 52 0 276 299 13 0 chrX 81350098 81350175 -81249755 + GA-rich Low_complexity Low_complexity 2 79 0 325 236 154 66 chrX 81351046 81351228 -81248702 + L1ME4a LINE L1 5851 6048 -73 598 156 44 15 chrX 81351237 81351372 -81248558 - L1MA7 LINE L1 -4 6287 6149 1686 119 14 31 chrX 81351372 81351665 -81248265 - THE1C LTR MaLR 0 375 88 2347 132 2 19 chrX 81351691 81352107 -81247823 - L1MA7 LINE L1 -138 6153 5745 968 297 130 54 chrX 81352525 81353308 -81246622 + L2 LINE L2 2154 2876 -396 1740 195 3 19 chrX 81353308 81353621 -81246309 + AluJo SINE Alu 1 308 -4 228 35 0 0 chrX 81353625 81353654 -81246276 + (CAA)n Simple_repeat Simple_repeat 2 30 0 968 297 130 54 chrX 81353654 81353829 -81246101 + L2 LINE L2 2878 3186 -86 35 41 0 0 chrX 81354296 81354345 -81245585 + AT_rich Low_complexity Low_complexity 1 49 0 782 271 104 5 chrX 81354998 81355219 -81244711 - MIR SINE MIR -2 260 18 21 0 0 0 chrX 81356528 81356549 -81243381 + AT_rich Low_complexity Low_complexity 1 21 0 4926 140 22 2 chrX 81356763 81357613 -81242317 - L1PA15 LINE L1 0 6165 5299 14178 188 19 7 chrX 81357616 81359354 -81240576 - L1PB1 LINE L1 0 6867 5151 282 29 0 0 chrX 81359354 81359389 -81240541 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 14178 188 19 7 chrX 81359389 81363136 -81236794 - L1PB1 LINE L1 -1716 5151 1311 4516 186 59 8 chrX 81363143 81364195 -81235735 - L1PB1 LINE L1 -5709 1154 6 2909 205 6 20 chrX 81364211 81364918 -81235012 - L1PA15 LINE L1 -847 5299 4603 3411 153 65 12 chrX 81364918 81365499 -81234431 - LTR9 LTR ERV1 0 612 1 1142 159 5 0 chrX 81365502 81365697 -81234233 - HUERS-P3 LTR ERV1 -4 8915 8720 794 169 17 17 chrX 81365851 81366029 -81233901 - HUERS-P3 LTR ERV1 -2450 2565 2388 * 1180 157 31 18 chrX 81366027 81366250 -81233680 - HUERS-P3 LTR ERV1 -1936 6983 6758 25299 153 79 54 chrX 81366255 81372663 -81227267 - HUERS-P3 LTR ERV1 -827 6591 22 3355 146 67 19 chrX 81372684 81373268 -81226662 - LTR9 LTR ERV1 0 612 1 2434 225 16 5 chrX 81373268 81373885 -81226045 - L1PA15 LINE L1 -1540 4606 3983 28 29 0 0 chrX 81374573 81374608 -81225322 + AT_rich Low_complexity Low_complexity 1 35 0 288 77 0 0 chrX 81374682 81374721 -81225209 + (TG)n Simple_repeat Simple_repeat 2 40 0 533 317 93 27 chrX 81374905 81375205 -81224725 - MLT1K LTR MaLR -153 435 116 383 296 88 31 chrX 81375456 81375615 -81224315 + MER5A DNA MER1_type 16 183 -6 1729 158 67 0 chrX 81375646 81375931 -81223999 - AluJb SINE Alu -8 304 1 12221 204 41 13 chrX 81376134 81380943 -81218987 + L1PA13 LINE L1 3 4961 -1836 5265 140 44 5 chrX 81380961 81381565 -81218365 + L1PA13 LINE L1 5474 6053 -761 210 37 0 0 chrX 81381565 81381592 -81218338 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5265 140 44 5 chrX 81381592 81382265 -81217665 + L1PA13 LINE L1 6053 6813 -1 272 260 40 60 chrX 81382404 81382604 -81217326 + L1M4b LINE L1 11 206 -6653 1977 179 53 8 chrX 81383061 81383457 -81216473 + MSTB1 LTR MaLR 3 416 -16 4378 242 68 34 chrX 81385124 81385407 -81214523 + L1PBb LINE L1 703 975 -5228 2268 83 0 0 chrX 81385407 81385685 -81214245 + AluSc SINE Alu 1 302 0 217 0 0 0 chrX 81385685 81385709 -81214221 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 4378 242 68 34 chrX 81385709 81387506 -81212424 + L1PBb LINE L1 975 2920 -3283 * 15990 185 22 10 chrX 81387504 81389726 -81210204 + L1PA3 LINE L1 1357 3553 -4058 1619 174 17 24 chrX 81389726 81390024 -81209906 - AluJb SINE Alu -16 296 1 15990 185 22 10 chrX 81390024 81393191 -81206739 + L1PA3 LINE L1 3553 6805 -806 20440 37 0 1 chrX 81393191 81396455 -81203475 + L1PA3 LINE L1 4328 7590 -3 15990 185 22 10 chrX 81396455 81396479 -81203451 + L1PA3 LINE L1 6805 6827 -784 27 87 0 0 chrX 81396521 81396590 -81203340 + AT_rich Low_complexity Low_complexity 1 69 0 11052 242 28 15 chrX 81396617 81400551 -81199379 - L1PA12 LINE L1 -1137 6447 2426 1990 70 52 17 chrX 81400551 81400708 -81199222 - AluY SINE Alu -14 297 124 189 0 0 0 chrX 81400708 81400729 -81199201 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1990 70 52 17 chrX 81400729 81400858 -81199072 - AluY SINE Alu -187 124 1 11052 242 28 15 chrX 81400858 81401110 -81198820 - L1PA12 LINE L1 -5158 2426 2179 447 349 0 17 chrX 81401157 81401332 -81198598 - L1PA12 LINE L1 -6615 959 788 4897 148 20 3 chrX 81401509 81402413 -81197517 - L1PA16 LINE L1 -16 6150 5232 26 64 0 0 chrX 81402841 81402888 -81197042 + AT_rich Low_complexity Low_complexity 1 47 0 5815 93 24 9 chrX 81402910 81403624 -81196306 - L1PA11 LINE L1 -4 6170 5439 1717 168 64 17 chrX 81403624 81403982 -81195948 - THE1C LTR MaLR 0 375 1 5815 93 24 9 chrX 81403982 81404153 -81195777 - L1PA11 LINE L1 -735 5439 5272 25 20 0 59 chrX 81404153 81404204 -81195726 + AT_rich Low_complexity Low_complexity 1 48 0 30 0 0 0 chrX 81405426 81405456 -81194474 + AT_rich Low_complexity Low_complexity 1 30 0 1422 340 31 25 chrX 81406340 81407090 -81192840 - L2 LINE L2 -2237 1077 324 325 320 90 30 chrX 81407110 81407344 -81192586 + L1MB4 LINE L1 2 249 -6293 392 267 95 41 chrX 81407621 81408094 -81191836 + L1MB4 LINE L1 588 1304 -5238 1829 229 9 18 chrX 81408100 81408645 -81191285 + L1MB4 LINE L1 5023 5562 -1082 725 154 160 41 chrX 81408647 81408816 -81191114 + MSTA LTR MaLR 240 428 0 2484 204 33 45 chrX 81408816 81409865 -81190065 + L1MB4 LINE L1 5677 6678 0 376 282 90 13 chrX 81409919 81410075 -81189855 - L2 LINE L2 -3014 300 133 241 289 123 9 chrX 81410250 81410364 -81189566 + MIR SINE MIR 54 180 -82 3030 123 53 4 chrX 81410426 81410913 -81189017 + MER9 LTR ERVK 1 511 0 507 293 88 17 chrX 81411289 81411764 -81188166 - L1ME4a LINE L1 -3 6118 5610 512 212 58 116 chrX 81411811 81412052 -81187878 + MIR SINE MIR 33 259 -3 40364 58 2 0 chrX 81412169 81418308 -81181622 + L1PA4 LINE L1 1 6150 -5 280 233 101 0 chrX 81420131 81420260 -81179670 - L1MC4a LINE L1 -1920 5888 5747 243 240 0 0 chrX 81420821 81420871 -81179059 + MIR3 SINE MIR 151 200 -8 386 241 12 0 chrX 81421106 81421189 -81178741 - MER96 DNA MER1_type? -91 84 1 888 148 15 89 chrX 81421258 81421460 -81178470 - MER5A DNA MER1_type 0 189 3 294 317 59 0 chrX 81421977 81422078 -81177852 - L2 LINE L2 -10 3262 3156 210 37 0 0 chrX 81422087 81422114 -81177816 + (CA)n Simple_repeat Simple_repeat 2 28 0 1486 192 7 0 chrX 81422179 81422460 -81177470 + L1PA16 LINE L1 5875 6157 -9 284 44 44 0 chrX 81422465 81422510 -81177420 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 631 289 182 18 chrX 81422627 81423077 -81176853 - L2 LINE L2 -657 2657 2134 241 286 14 0 chrX 81423421 81423491 -81176439 - LTR16B LTR ERVL 0 464 394 404 351 27 7 chrX 81423603 81423751 -81176179 - LTR16B LTR ERVL -227 237 87 416 102 45 45 chrX 81423756 81423844 -81176086 + THE1B LTR MaLR 194 281 -83 5370 159 33 1 chrX 81423858 81427332 -81172598 + L1PB1 LINE L1 5 3890 -2972 39466 47 2 1 chrX 81427336 81433481 -81166449 + L1PA3 LINE L1 2 6152 -3 6942 196 105 2 chrX 81433468 81434687 -81165243 + L1PB1 LINE L1 3867 4959 -1908 * 2137 108 6 32 chrX 81434687 81435003 -81164927 + AluSg SINE Alu 1 308 -2 6942 196 105 2 chrX 81435003 81436511 -81163419 + L1PB1 LINE L1 4959 6859 -8 6174 97 11 0 chrX 81436540 81438010 -81161920 + L1PA8A LINE L1 4621 6100 -31 411 250 42 0 chrX 81438058 81438154 -81161776 - LTR16B LTR ERVL -364 100 1 293 286 71 58 chrX 81438211 81438365 -81161565 + MIR SINE MIR 53 208 -54 1285 229 18 4 chrX 81438514 81438793 -81161137 - AluJo SINE Alu -29 283 1 2229 164 10 21 chrX 81438907 81439296 -81160634 - L1PA15 LINE L1 -5 6160 5776 556 59 88 10 chrX 81439297 81439607 -81160323 + (TA)n Simple_repeat Simple_repeat 1 334 0 23 54 0 0 chrX 81439607 81439644 -81160286 + AT_rich Low_complexity Low_complexity 1 37 0 570 67 86 2 chrX 81439647 81440118 -81159812 + (TA)n Simple_repeat Simple_repeat 1 510 0 21268 147 17 92 chrX 81440121 81444314 -81155616 - L1PA15 LINE L1 -377 5788 2094 249 33 0 0 chrX 81444314 81444344 -81155586 + (TG)n Simple_repeat Simple_repeat 1 30 0 21268 147 17 92 chrX 81444344 81445504 -81154426 - L1PA15 LINE L1 -4071 2094 849 763 239 36 9 chrX 81445529 81445779 -81154151 - L1M4 LINE L1 -3809 3148 2921 1357 235 69 42 chrX 81445780 81446647 -81153283 - L1M4 LINE L1 -4788 2171 1260 256 328 0 0 chrX 81447012 81447131 -81152799 - L1M4 LINE L1 -6650 209 91 547 205 13 20 chrX 81447216 81447367 -81152563 - L1MA7 LINE L1 -2 6289 6140 818 168 25 6 chrX 81447368 81447529 -81152401 + L1M2 LINE L1 5372 5535 -777 1377 210 3 39 chrX 81448927 81449236 -81150694 + AluJo SINE Alu 1 298 -14 344 222 74 0 chrX 81449339 81449420 -81150510 + L1MA4A LINE L1 3 89 -6760 * 5502 249 37 13 chrX 81449418 81450709 -81149221 + L1MA4A LINE L1 421 1742 -5107 * 5581 68 163 9 chrX 81450704 81451518 -81148412 - L1PA3 LINE L1 -5129 1017 78 * 35358 41 2 1 chrX 81451517 81456682 -81143248 + L1PA3 LINE L1 986 6155 0 13168 222 44 20 chrX 81456694 81457764 -81142166 + L1MA4A LINE L1 1727 2770 -4078 1890 158 20 7 chrX 81457764 81458062 -81141868 - AluSq SINE Alu -11 302 1 13168 222 44 20 chrX 81458062 81461185 -81138745 + L1MA4A LINE L1 2770 6036 -812 6463 40 3 7 chrX 81461185 81461997 -81137933 + SVA Other Other 608 1416 0 507 211 64 0 chrX 81462131 81462240 -81137690 + Charlie1 DNA MER1_type 1614 1729 -1032 4973 133 26 65 chrX 81462249 81463229 -81136701 + L1MA4A LINE L1 6019 6960 -45 180 0 0 0 chrX 81463939 81463959 -81135971 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 721 184 0 22 chrX 81463972 81464108 -81135822 - FLAM_C SINE Alu 0 133 1 678 151 34 0 chrX 81464215 81464361 -81135569 + CT-rich Low_complexity Low_complexity 3 153 0 824 178 35 29 chrX 81464361 81464612 -81135318 + L1MB1 LINE L1 3452 3690 -2456 2144 195 28 3 chrX 81464616 81465006 -81134924 + MER47B DNA MER2_type 2 401 -17 282 163 0 0 chrX 81465007 81465056 -81134874 + L1MB1 LINE L1 3699 3747 -2399 8543 104 9 11 chrX 81465056 81467132 -81132798 - L1PA7 LINE L1 -4 6150 4076 16326 160 12 95 chrX 81467136 81471122 -81128808 + L1P LINE L1 1734 5389 -757 8481 45 18 1 chrX 81471123 81472195 -81127735 - L1PA5 LINE L1 -1076 5070 3981 6973 53 3 2 chrX 81472195 81473301 -81126629 + L1PA5 LINE L1 5063 6169 0 3483 175 27 39 chrX 81473301 81474037 -81125893 + L1MB1 LINE L1 5382 6108 -60 10392 170 33 2 chrX 81474044 81477088 -81122842 - L1MA1 LINE L1 0 6302 3166 4579 131 21 5 chrX 81477115 81478274 -81121656 - L1PA12 LINE L1 0 6168 4957 1205 196 95 16 chrX 81678276 81678582 -80921348 - MLT1D LTR MaLR -158 347 18 1359 154 0 36 chrX 81679335 81679556 -80920374 + AluSx SINE Alu 1 213 -99 29 28 0 0 chrX 81680379 81680415 -80919515 + AT_rich Low_complexity Low_complexity 1 36 0 255 359 0 0 chrX 81680469 81680547 -80919383 - MIR SINE MIR -112 150 73 375 154 0 0 chrX 81680687 81680752 -80919178 + CT-rich Low_complexity Low_complexity 4 68 0 1757 165 9 22 chrX 81681524 81681839 -80918091 + AluJo SINE Alu 1 311 -1 705 73 0 0 chrX 81681839 81681935 -80917995 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 991 160 6 0 chrX 81682047 81682203 -80917727 - AluJo SINE Alu -155 157 1 1958 124 65 0 chrX 81682203 81682559 -80917371 - L1MC3 LINE L1 -151 7634 7256 1585 137 25 3 chrX 81682830 81683141 -80916789 + Tigger4(Zombi) DNA MER2_type 32 2724 -7 2091 127 7 0 chrX 81683142 81683433 -80916497 + AluSx SINE Alu 1 293 -19 355 322 132 7 chrX 81683486 81683638 -80916292 + L2 LINE L2 3102 3272 0 5476 160 56 3 chrX 81683718 81684788 -80915142 - Tigger3b DNA MER2_type 0 1231 104 3134 190 3 3 chrX 81684788 81685371 -80914559 - MER52A LTR ERV1 0 1755 1173 1659 251 83 34 chrX 81686177 81686831 -80913099 - L1ME3A LINE L1 -39 6131 5446 1060 157 5 43 chrX 81687379 81687608 -80912322 - AluJb SINE Alu 0 331 110 1949 143 122 18 chrX 81687608 81687994 -80911936 + MSTA LTR MaLR 1 426 -2 4771 143 15 50 chrX 81687997 81688945 -80910985 + MSTA-int LTR MaLR 3 917 -663 17518 187 15 37 chrX 81689065 81689447 -80910483 + L1PA13 LINE L1 1078 1467 -4696 2476 90 0 3 chrX 81689447 81689758 -80910172 + AluY SINE Alu 1 310 -1 17518 187 15 37 chrX 81689758 81694569 -80905361 + L1PA13 LINE L1 1467 6163 0 23 33 0 0 chrX 81694714 81694744 -80905186 + AT_rich Low_complexity Low_complexity 1 30 0 311 281 72 33 chrX 81694958 81695129 -80904801 + MIR SINE MIR 34 206 -56 204 266 0 16 chrX 81695147 81695211 -80904719 + L2 LINE L2 3158 3220 -93 232 390 27 42 chrX 81695461 81695720 -80904210 - L2 LINE L2 -192 3080 2826 304 299 27 54 chrX 81696416 81696563 -80903367 - MIR SINE MIR -65 197 55 340 145 60 24 chrX 81696597 81696680 -80903250 - L1MA8 LINE L1 -3 6288 6203 535 207 44 0 chrX 81696680 81696815 -80903115 + L1MA6 LINE L1 5727 5867 -433 181 265 73 29 chrX 81696816 81696884 -80903046 - MER5A DNA MER1_type -73 116 46 482 296 0 0 chrX 81697281 81697406 -80902524 + L2 LINE L2 3184 3308 -5 233 365 61 7 chrX 81697689 81697837 -80902093 + MIR SINE MIR 31 184 -64 502 247 73 17 chrX 81698630 81698808 -80901122 + MIR SINE MIR 74 261 -1 27 49 0 0 chrX 81700014 81700055 -80899875 + AT_rich Low_complexity Low_complexity 1 41 0 1944 123 7 4 chrX 81700225 81700501 -80899429 + AluSx SINE Alu 22 298 -14 15194 112 1 0 chrX 81700502 81703549 -80896381 + L1PA7 LINE L1 3114 6141 -13 411 21 0 0 chrX 81703556 81703604 -80896326 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 387 0 0 0 chrX 81704548 81704591 -80895339 + (TA)n Simple_repeat Simple_repeat 2 44 0 201 196 0 20 chrX 81704616 81704667 -80895263 + (TTA)n Simple_repeat Simple_repeat 3 52 0 7020 213 41 11 chrX 81704906 81706388 -80893542 - L1PA13 LINE L1 -5261 1526 1 41 0 0 0 chrX 81706815 81706856 -80893074 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 81707551 81707573 -80892357 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 81708347 81708378 -80891552 + AT_rich Low_complexity Low_complexity 1 31 0 196 264 127 55 chrX 81708380 81708490 -80891440 - L2 LINE L2 -5 3308 3191 2136 116 0 13 chrX 81708781 81709084 -80890846 - AluSx SINE Alu -6 306 8 5289 116 12 0 chrX 81709106 81709773 -80890157 - L1PA15 LINE L1 -3 6162 5482 2344 86 3 0 chrX 81709773 81710087 -80889843 - AluSp SINE Alu 0 313 1 5289 116 12 0 chrX 81710087 81710239 -80889691 - L1PA15 LINE L1 -683 5482 5333 2369 111 0 0 chrX 81710561 81710868 -80889062 - AluSx SINE Alu -5 307 1 222 254 17 17 chrX 81711746 81711805 -80888125 - L2 LINE L2 -9 3304 3246 657 167 61 0 chrX 81711826 81711958 -80887972 - MLT1D LTR MaLR 0 505 366 2165 155 26 34 chrX 81712080 81712545 -80887385 + L1P LINE L1 3455 3915 -2231 1044 162 5 0 chrX 81712541 81712726 -80887204 + L1PBa LINE L1 15 200 -6663 * 9696 146 34 3 chrX 81712726 81715801 -80884129 + L1PBa LINE L1 634 3926 -2936 37832 44 26 2 chrX 81715810 81720770 -80879160 + L1P LINE L1 1 5083 -1063 1001 76 0 0 chrX 81723148 81723279 -80876651 + AluSg SINE Alu 1 131 -179 412 114 51 0 chrX 81723288 81723367 -80876563 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 1154 119 24 0 chrX 81723367 81723535 -80876395 + AluSg SINE Alu 123 294 -16 203 171 85 0 chrX 81725815 81725897 -80874033 + (TG)n Simple_repeat Simple_repeat 1 89 0 223 176 15 44 chrX 81727069 81727137 -80872793 + CT-rich Low_complexity Low_complexity 2 67 0 24 32 0 0 chrX 81731524 81731555 -80868375 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chrX 81733377 81733400 -80866530 + AT_rich Low_complexity Low_complexity 1 23 0 362 127 0 0 chrX 81734497 81734560 -80865370 - Alu SINE Alu 0 302 240 308 173 0 53 chrX 81735727 81735802 -80864128 - L2 LINE L2 0 3313 3243 25 51 0 0 chrX 81736002 81736041 -80863889 + AT_rich Low_complexity Low_complexity 1 39 0 523 58 0 0 chrX 81738043 81738112 -80861818 - MER41B LTR ERV1 -86 549 481 180 135 0 0 chrX 81738186 81738223 -80861707 + (T)n Simple_repeat Simple_repeat 1 37 0 3687 93 8 0 chrX 81739025 81739551 -80860379 - L1MA1 LINE L1 -4 7717 7188 * 5748 112 9 7 chrX 81739548 81741319 -80858611 - L1PA14 LINE L1 -1 6160 4386 12762 164 77 23 chrX 81741321 81746939 -80852991 - L1MA1 LINE L1 -521 7200 1259 2025 117 0 20 chrX 81746939 81747239 -80852691 - MER4A LTR ERV1 0 664 371 2724 199 63 47 chrX 81747351 81748035 -80851895 - L1MA1 LINE L1 -6853 712 18 353 314 71 36 chrX 81748589 81748729 -80851201 - MIR SINE MIR -78 184 40 5268 233 64 120 chrX 81749282 81750325 -80849605 - L2 LINE L2 0 3313 2212 1855 141 10 23 chrX 81750325 81750631 -80849299 - AluJo SINE Alu -10 302 1 5268 233 64 120 chrX 81750631 81750876 -80849054 - L2 LINE L2 -1101 2212 1955 1741 164 0 32 chrX 81750876 81751186 -80848744 - AluJo SINE Alu -10 302 3 5268 233 64 120 chrX 81751186 81752730 -80847200 - L2 LINE L2 -1358 1955 658 1441 95 24 0 chrX 81753189 81753399 -80846531 - L1MA3 LINE L1 -1 6304 6090 210 37 0 0 chrX 81754185 81754212 -80845718 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 353 245 47 19 chrX 81754888 81754994 -80844936 + MIR SINE MIR 112 220 -42 218 287 119 40 chrX 81755746 81755847 -80844083 - MER5A DNA MER1_type 0 189 81 523 149 7 2 chrX 81756217 81756319 -80843611 + L1MA3 LINE L1 6198 6300 0 25 31 0 0 chrX 81756948 81756980 -80842950 + AT_rich Low_complexity Low_complexity 1 32 0 233 346 19 32 chrX 81757099 81757255 -80842675 + MIR SINE MIR 34 187 -75 180 378 40 0 chrX 81757511 81757585 -80842345 - L2 LINE L2 -1 3312 3236 260 275 0 14 chrX 81757806 81757875 -80842055 + MIR SINE MIR 72 139 -69 291 294 28 28 chrX 81762064 81762207 -80837723 - MARNA DNA Mariner -117 469 327 2710 63 8 8 chrX 81764972 81765337 -80834593 - L1PA6 LINE L1 -7 6147 5783 1956 141 16 0 chrX 81765569 81765875 -80834055 + AluSx SINE Alu 1 311 -1 388 175 50 12 chrX 81766814 81766894 -80833036 - MIR3 SINE MIR -49 159 77 1333 102 10 0 chrX 81768071 81768267 -80831663 - L1PA14 LINE L1 -9 6152 5955 597 97 21 0 chrX 81768369 81768462 -80831468 - L1 LINE L1 -901 5245 5151 5026 178 19 16 chrX 81768482 81768629 -80831301 - L1MA10 LINE L1 -6 6328 6183 2141 113 0 31 chrX 81768629 81768947 -80830983 + AluSx SINE Alu 1 308 -4 5026 178 19 16 chrX 81768947 81770387 -80829543 - L1MA10 LINE L1 -151 6183 4579 1754 174 25 65 chrX 81770496 81770898 -80829032 - MLT1B LTR MaLR -1 389 4 420 298 40 13 chrX 81771044 81771195 -80828735 + L3 LINE CR1 759 913 -664 27 0 0 0 chrX 81773803 81773830 -80826100 + AT_rich Low_complexity Low_complexity 1 27 0 283 210 13 134 chrX 81776410 81776567 -80823363 + MER112 DNA MER1_type 118 255 -5 22 0 0 0 chrX 81776705 81776727 -80823203 + AT_rich Low_complexity Low_complexity 1 22 0 10763 182 16 19 chrX 81776727 81779952 -80819978 - L1PB1 LINE L1 -1 6866 3653 2407 212 169 14 chrX 81779993 81780790 -80819140 - L1PB1 LINE L1 -5700 1163 243 5676 115 20 7 chrX 81780942 81782113 -80817817 + L1PA13 LINE L1 4975 6162 -1 2434 101 8 8 chrX 81782400 81782755 -80817175 - THE1A LTR MaLR 0 355 1 690 188 39 0 chrX 81783206 81783360 -80816570 - L1MC3 LINE L1 -9 7776 7617 652 150 0 0 chrX 81783375 81783475 -80816455 - AluSg/x SINE Alu -18 294 195 4895 231 13 69 chrX 81783576 81785240 -80814690 - L1P3 LINE L1 -3351 4233 2673 * 6159 247 90 20 chrX 81785237 81787004 -80812926 - L1P3 LINE L1 -5691 1890 1 345 282 8 26 chrX 81787369 81787486 -80812444 - HAL1 LINE L1 -1509 998 884 24 67 0 0 chrX 81787734 81787779 -80812151 + AT_rich Low_complexity Low_complexity 1 45 0 1824 156 9 19 chrX 81788337 81788652 -80811278 - AluJb SINE Alu 0 312 1 234 204 20 0 chrX 81789518 81789567 -80810363 - MER21B LTR ERV1 -485 378 329 591 244 81 47 chrX 81789568 81789802 -80810128 - HAL1 LINE L1 -1475 1032 791 * 2225 263 74 31 chrX 81789801 81790588 -80809342 + HAL1 LINE L1 1629 2456 -51 2043 124 7 13 chrX 81790588 81790886 -80809044 - AluSx SINE Alu -11 301 6 2225 263 74 31 chrX 81790886 81790940 -80808990 + HAL1 LINE L1 2456 2506 -1 244 195 161 58 chrX 81790951 81791038 -80808892 - MER5A DNA MER1_type -48 141 46 1508 141 7 67 chrX 81792102 81792371 -80807559 - AluSx SINE Alu -18 294 42 22 0 0 0 chrX 81793684 81793706 -80806224 + AT_rich Low_complexity Low_complexity 1 22 0 294 306 59 0 chrX 81795082 81795167 -80804763 + L2 LINE L2 2970 3059 -213 638 135 10 0 chrX 81795173 81795277 -80804653 + MER53 DNA DNA 1 105 -84 2293 73 16 7 chrX 81796541 81796844 -80803086 - AluSg SINE Alu -4 306 1 942 224 12 67 chrX 81799390 81799644 -80800286 - MIR SINE MIR -21 241 2 2310 92 0 0 chrX 81800210 81800502 -80799428 + AluY SINE Alu 1 292 -19 554 331 41 0 chrX 81800563 81800808 -80799122 + MIR SINE MIR 4 258 -4 28 0 0 0 chrX 81801527 81801555 -80798375 + AT_rich Low_complexity Low_complexity 1 28 0 263 389 16 0 chrX 81801725 81801851 -80798079 - L2 LINE L2 0 3313 3186 2211 90 0 0 chrX 81802215 81802492 -80797438 + AluSg SINE Alu 1 277 -33 186 71 0 0 chrX 81802492 81802520 -80797410 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 456 303 156 61 chrX 81802541 81803392 -80796538 - L2 LINE L2 -518 2796 1865 858 239 17 0 chrX 81803487 81803667 -80796263 - MER5A DNA MER1_type -1 188 6 2524 132 9 21 chrX 81804523 81804955 -80794975 + MSTA-int LTR MaLR 1153 1579 -1 1998 143 135 5 chrX 81804956 81805335 -80794595 + MSTA LTR MaLR 1 428 0 256 86 0 0 chrX 81805339 81805374 -80794556 - FLAM SINE Alu -22 111 77 555 272 59 45 chrX 81805438 81805728 -80794202 + L1MA9 LINE L1 5969 6262 -50 36 70 0 0 chrX 81806228 81806299 -80793631 + AT_rich Low_complexity Low_complexity 1 71 0 913 214 0 0 chrX 81806752 81806911 -80793019 + FRAM SINE Alu 1 152 -24 306 279 100 43 chrX 81806921 81807061 -80792869 + MIR SINE MIR 47 194 -68 4849 219 26 23 chrX 81807579 81809476 -80790454 + L1PA15 LINE L1 1224 3147 -3650 1489 236 28 12 chrX 81809483 81809915 -80790015 + L1PA15 LINE L1 3708 4146 -2651 7826 214 4 1 chrX 81809956 81812516 -80787414 + L1PA15 LINE L1 4263 6816 0 6488 139 4 5 chrX 81813636 81815165 -80784765 - L1PB1 LINE L1 -2 6149 4623 2417 190 0 20 chrX 81815163 81815668 -80784262 + L1PB1 LINE L1 4096 4590 -1556 * 249 57 0 0 chrX 81817065 81817100 -80782830 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 279 0 0 0 chrX 81817099 81817130 -80782800 + (GA)n Simple_repeat Simple_repeat 2 32 0 259 337 0 30 chrX 81817790 81817891 -80782039 + MIR SINE MIR 50 147 -61 22 0 0 0 chrX 81818048 81818070 -80781860 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chrX 81818383 81818412 -80781518 + AT_rich Low_complexity Low_complexity 1 29 0 227 329 14 14 chrX 81818716 81818786 -80781144 + Charlie1 DNA MER1_type 2 71 -2690 * 906 186 110 49 chrX 81818784 81819047 -80780883 + Charlie1 DNA MER1_type 2343 2621 -140 401 248 62 19 chrX 81819274 81819435 -80780495 - L1ME4a LINE L1 -165 5956 5789 273 282 0 0 chrX 81819529 81819600 -80780330 - MIR SINE MIR -10 252 182 1461 165 4 4 chrX 81819757 81819999 -80779931 - AluJo SINE Alu -70 242 1 248 170 64 0 chrX 81821950 81821997 -80777933 + L2 LINE L2 3215 3264 -8 278 252 150 41 chrX 81822976 81823123 -80776807 - MIR SINE MIR -70 192 30 1703 176 3 25 chrX 81824290 81824609 -80775321 + AluJo SINE Alu 1 312 0 201 147 0 0 chrX 81828350 81828384 -80771546 + (TG)n Simple_repeat Simple_repeat 2 35 0 1070 167 16 0 chrX 81828509 81828695 -80771235 - MER5A DNA MER1_type 0 189 1 347 274 12 12 chrX 81828804 81828888 -80771042 + MIR3 SINE MIR 111 194 -14 648 279 85 28 chrX 81829007 81829254 -80770676 + MIR SINE MIR 2 262 0 462 273 8 8 chrX 81829986 81830107 -80769823 + MIR3 SINE MIR 81 201 -7 808 227 58 0 chrX 81830681 81830853 -80769077 - MIR SINE MIR 0 262 81 1942 133 4 0 chrX 81830902 81831243 -80768687 - AluSx SINE Alu 0 344 3 3393 94 13 26 chrX 81831251 81831791 -80768139 - L1MA2 LINE L1 0 6304 5772 248 0 31 0 chrX 81832420 81832452 -80767478 + (TA)n Simple_repeat Simple_repeat 1 33 0 180 246 62 46 chrX 81832626 81832691 -80767239 - MIR3 SINE MIR -141 67 2 26 30 0 0 chrX 81833315 81833348 -80766582 + AT_rich Low_complexity Low_complexity 1 33 0 185 349 0 16 chrX 81833844 81833907 -80766023 + L2 LINE L2 3206 3267 -5 2558 151 27 0 chrX 81834246 81834611 -80765319 - L1PB4 LINE L1 -1 6155 5774 252 0 0 0 chrX 81834611 81834639 -80765291 + (TG)n Simple_repeat Simple_repeat 2 29 0 2558 151 27 0 chrX 81834639 81834724 -80765206 - L1PB4 LINE L1 -382 5774 5693 206 250 0 0 chrX 81834855 81834899 -80765031 + (CAA)n Simple_repeat Simple_repeat 3 46 0 195 42 0 0 chrX 81836863 81836887 -80763043 + (T)n Simple_repeat Simple_repeat 1 24 0 2522 48 3 13 chrX 81836898 81837209 -80762721 - AluY SINE Alu -3 308 1 6730 135 21 5 chrX 81837820 81839757 -80760173 - L1MA1 LINE L1 0 6302 4333 9449 93 6 3 chrX 81839757 81841036 -80758894 + HSMAR1 DNA Mariner 5 1287 0 6730 135 21 5 chrX 81841036 81841074 -80758856 - L1MA1 LINE L1 -1969 4333 4297 * 10983 109 35 30 chrX 81841056 81843603 -80756327 + L1PA7 LINE L1 404 3045 -3416 6497 91 9 6 chrX 81843596 81845183 -80754747 + L1PA7 LINE L1 3992 5665 -804 * 2768 7 0 3 chrX 81845183 81845489 -80754441 - AluYa5 SINE Alu -6 305 1 6497 91 9 6 chrX 81845489 81846282 -80753648 + L1PA7 LINE L1 5665 6454 -15 330 26 0 0 chrX 81846283 81846322 -80753608 + (CA)n Simple_repeat Simple_repeat 2 40 0 15965 197 22 27 chrX 81846326 81848527 -80751403 - L1M4 LINE L1 -1807 5758 3548 2569 13 17 10 chrX 81848527 81848825 -80751105 - AluYb8 SINE Alu -6 312 13 15965 197 22 27 chrX 81848825 81851816 -80748114 - L1M4 LINE L1 -4017 3548 592 198 0 0 0 chrX 81851820 81851842 -80748088 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 40274 36 23 2 chrX 81851842 81857837 -80742093 - L1PA3 LINE L1 -10 6145 21 2008 226 30 38 chrX 81857845 81858421 -80741509 - L1M4 LINE L1 -6970 595 25 2675 35 0 6 chrX 81858509 81858822 -80741108 + AluY SINE Alu 1 311 0 258 125 0 0 chrX 81859435 81859483 -80740447 + (TA)n Simple_repeat Simple_repeat 1 48 0 612 228 0 15 chrX 81860219 81860355 -80739575 + MER94 DNA DNA 1 134 0 209 267 0 0 chrX 81861846 81861891 -80738039 + L2 LINE L2 3220 3264 -8 1541 86 66 8 chrX 81862318 81862574 -80737356 - L1MA4A LINE L1 -5 6298 6028 2274 18 4 22 chrX 81862831 81863107 -80736823 + L1PA4 LINE L1 5882 6152 -3 239 29 57 0 chrX 81864534 81864569 -80735361 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chrX 81865130 81865153 -80734777 + AT_rich Low_complexity Low_complexity 1 23 0 904 253 24 16 chrX 81865296 81865545 -80734385 - MIR SINE MIR 0 262 12 373 280 76 25 chrX 81865566 81865684 -80734246 + MIR SINE MIR 18 141 -67 530 327 28 36 chrX 81865800 81866048 -80733882 + L3 LINE CR1 1329 1574 -3 203 216 0 20 chrX 81866104 81866155 -80733775 + (TA)n Simple_repeat Simple_repeat 2 51 0 2241 141 56 2 chrX 81866222 81866634 -80733296 + L1MA6 LINE L1 4558 4991 -1155 3698 152 5 35 chrX 81867827 81868814 -80731116 + L1MA6 LINE L1 4980 5950 -350 2827 105 42 9 chrX 81868814 81869242 -80730688 + MLT2A1 LTR ERVL 1 442 -2 41134 78 9 4 chrX 81869244 81874867 -80725063 + HERVL-A1 LTR ERVL 1 5654 0 2570 101 69 7 chrX 81874867 81875275 -80724655 + MLT2A1 LTR ERVL 1 433 -11 1380 174 82 10 chrX 81875276 81875581 -80724349 + L1MA6 LINE L1 5952 6278 -22 547 321 21 5 chrX 81875883 81876070 -80723860 + MIR SINE MIR 13 202 -60 9009 146 43 11 chrX 81876171 81876646 -80723284 + Tigger1 DNA MER2_type 2 460 -1958 1619 201 3 13 chrX 81876646 81876949 -80722981 + AluJb SINE Alu 1 300 -12 9009 146 43 11 chrX 81876949 81878128 -80721802 + Tigger1 DNA MER2_type 460 1709 -709 4622 105 33 72 chrX 81878128 81878200 -80721730 - LTR19C LTR ERV1 0 779 706 477 0 0 0 chrX 81878200 81878253 -80721677 + (CA)n Simple_repeat Simple_repeat 2 54 0 4622 105 33 72 chrX 81878253 81878989 -80720941 - LTR19C LTR ERV1 -73 706 2 1001 192 12 72 chrX 81878992 81879249 -80720681 - HUERS-P3 LTR ERV1 0 8919 7172 2231 112 0 0 chrX 81879249 81879545 -80720385 + AluSg1 SINE Alu 1 296 -13 14803 198 36 44 chrX 81879700 81886444 -80713486 - HUERS-P3 LTR ERV1 -761 6657 2 1134 84 45 34 chrX 81886450 81886628 -80713302 - LTR19C LTR ERV1 -599 180 1 4242 133 11 21 chrX 81886628 81886983 -80712947 + Tigger1 DNA MER2_type 1709 2055 -363 2026 64 4 0 chrX 81886983 81887233 -80712697 - AluY SINE Alu -5 306 56 4242 133 11 21 chrX 81887233 81887584 -80712346 + Tigger1 DNA MER2_type 2055 2408 -10 214 200 18 18 chrX 81887734 81887789 -80712141 + GA-rich Low_complexity Low_complexity 2 56 0 26 0 0 0 chrX 81887970 81887996 -80711934 + AT_rich Low_complexity Low_complexity 1 26 0 287 277 97 63 chrX 81888227 81888433 -80711497 + MIR SINE MIR 1 213 -49 1735 153 30 0 chrX 81888606 81888868 -80711062 + AluSg SINE Alu 1 270 -40 23 19 0 39 chrX 81888884 81888896 -80711034 + AT_rich Low_complexity Low_complexity 1 12 -38 240 35 0 0 chrX 81888896 81888925 -80711005 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 19 0 39 chrX 81888925 81888944 -80710986 + AT_rich Low_complexity Low_complexity 12 30 -20 1410 165 8 8 chrX 81888944 81889198 -80710732 - L1PA16 LINE L1 -7 6159 5906 23 19 0 39 chrX 81889198 81889217 -80710713 + AT_rich Low_complexity Low_complexity 30 50 0 296 270 0 0 chrX 81889373 81889436 -80710494 - L2 LINE L2 0 3313 3251 292 384 27 0 chrX 81890077 81890189 -80709741 - MIR3 SINE MIR -23 185 71 23 0 0 0 chrX 81892773 81892796 -80707134 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 81892993 81893014 -80706916 + AT_rich Low_complexity Low_complexity 1 21 0 264 30 0 0 chrX 81893875 81893908 -80706022 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chrX 81894111 81894146 -80705784 + AT_rich Low_complexity Low_complexity 1 35 0 12973 96 8 1 chrX 81896173 81898796 -80701134 - L1PA7 LINE L1 -5 6149 3516 17460 124 15 10 chrX 81898796 81901595 -80698335 + L1P LINE L1 792 3606 -2540 990 235 16 45 chrX 81901873 81902116 -80697814 - MIR SINE MIR -25 237 2 14051 135 19 37 chrX 81902549 81904628 -80695302 + Tigger1 DNA MER2_type 1 2116 -302 1320 217 7 27 chrX 81904628 81904928 -80695002 + AluJo SINE Alu 1 294 -18 1766 156 47 0 chrX 81904936 81905211 -80694719 + AluSx SINE Alu 1 288 -24 14051 135 19 37 chrX 81905211 81905584 -80694346 + Tigger1 DNA MER2_type 2123 2418 0 2303 89 9 6 chrX 81906290 81906626 -80693304 + L1MA1 LINE L1 5966 6302 0 189 0 0 0 chrX 81906735 81906756 -80693174 + (TA)n Simple_repeat Simple_repeat 2 22 0 187 246 79 88 chrX 81907360 81907474 -80692456 + L2 LINE L2 1893 2005 -1309 315 288 25 8 chrX 81907826 81907944 -80691986 + GA-rich Low_complexity Low_complexity 4 123 0 22 80 0 0 chrX 81908030 81908080 -80691850 + AT_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chrX 81909312 81909345 -80690585 + AT_rich Low_complexity Low_complexity 1 33 0 4241 133 25 43 chrX 81911196 81911980 -80687950 - LTR1 LTR ERV1 0 785 16 22 56 0 0 chrX 81912243 81912279 -80687651 + AT_rich Low_complexity Low_complexity 1 36 0 2190 99 0 7 chrX 81912295 81912589 -80687341 + AluSx SINE Alu 1 292 -20 32230 26 0 0 chrX 81912590 81916434 -80683496 - L1HS LINE L1 -798 5348 1504 7271 9 0 0 chrX 81916428 81917244 -80682686 + L1HS LINE L1 5340 6155 0 * 225 65 0 0 chrX 81917262 81917293 -80682637 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4530 152 10 84 chrX 81917321 81917955 -80681975 - L1PA15 LINE L1 -3 6162 5482 965 166 6 0 chrX 81917955 81918112 -80681818 - AluJb SINE Alu -26 286 129 4530 152 10 84 chrX 81918112 81919085 -80680845 - L1PA15 LINE L1 -683 5482 4513 26 0 0 0 chrX 81919125 81919151 -80680779 + AT_rich Low_complexity Low_complexity 1 26 0 1703 143 29 10 chrX 81919221 81919529 -80680401 - L1PB3 LINE L1 0 6154 5841 248 103 0 0 chrX 81919529 81919568 -80680362 + L1P5 LINE L1 5451 5489 -662 200 333 11 32 chrX 81920336 81920429 -80679501 - L2 LINE L2 -236 3036 2946 450 0 0 0 chrX 81920843 81920893 -80679037 + (CA)n Simple_repeat Simple_repeat 1 50 0 357 62 0 0 chrX 81921496 81921544 -80678386 + (TG)n Simple_repeat Simple_repeat 2 49 0 25 31 0 0 chrX 81921578 81921610 -80678320 + AT_rich Low_complexity Low_complexity 1 32 0 1649 189 3 13 chrX 81921877 81922189 -80677741 + AluJo SINE Alu 1 309 -3 1050 184 4 51 chrX 81922281 81922515 -80677415 - AluJo SINE Alu -8 304 82 24 0 0 0 chrX 81923246 81923270 -80676660 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 81924727 81924749 -80675181 + AT_rich Low_complexity Low_complexity 1 22 0 219 174 22 0 chrX 81927106 81927152 -80672778 + CT-rich Low_complexity Low_complexity 2 48 0 2151 188 70 0 chrX 81929019 81929417 -80670513 + MSTB LTR MaLR 1 426 0 539 299 14 58 chrX 81929951 81930158 -80669772 - MIR3 SINE MIR 0 208 11 244 304 61 50 chrX 81930653 81930834 -80669096 + L2 LINE L2 3127 3309 -4 1409 158 24 24 chrX 81930962 81931215 -80668715 - AluJo SINE Alu 0 312 60 249 240 0 29 chrX 81931666 81931770 -80668160 + T-rich Low_complexity Low_complexity 1 101 0 474 247 68 37 chrX 81932422 81932612 -80667318 - L2 LINE L2 0 3313 3118 400 224 26 60 chrX 81934930 81935046 -80664884 - Charlie8 DNA MER1_type -2153 264 153 4250 113 3 2 chrX 81935092 81935714 -80664216 - L1PA16 LINE L1 -18 6148 5526 280 274 36 0 chrX 81935995 81936079 -80663851 + MIR SINE MIR 67 153 -55 495 93 21 10 chrX 81937740 81937837 -80662093 + (TA)n Simple_repeat Simple_repeat 1 98 0 180 0 0 0 chrX 81938212 81938232 -80661698 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 432 139 0 0 chrX 81938529 81938608 -80661322 + (TG)n Simple_repeat Simple_repeat 2 80 0 23 33 0 0 chrX 81940655 81940685 -80659245 + AT_rich Low_complexity Low_complexity 1 30 0 1215 244 11 72 chrX 81940763 81941123 -80658807 - MER102b DNA MER1_type -3 338 1 21 36 0 0 chrX 81941351 81941379 -80658551 + AT_rich Low_complexity Low_complexity 1 28 0 228 135 0 0 chrX 81941904 81941941 -80657989 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 759 287 69 24 chrX 81942533 81942780 -80657150 - MIR SINE MIR 0 262 5 909 270 62 18 chrX 81943297 81943667 -80656263 - L1ME3A LINE L1 -298 5872 5485 228 311 0 0 chrX 81943987 81944048 -80655882 + MIR3 SINE MIR 112 172 -36 291 98 20 39 chrX 81944566 81944617 -80655313 - MER4B LTR ERV1 -62 548 499 402 21 0 0 chrX 81944870 81944917 -80655013 + (CA)n Simple_repeat Simple_repeat 1 47 0 24 67 0 0 chrX 81946007 81946052 -80653878 + AT_rich Low_complexity Low_complexity 1 45 0 1228 167 144 26 chrX 81947788 81948094 -80651836 - MER2 DNA MER2_type -1 343 2 4384 175 81 20 chrX 81948276 81949238 -80650692 - L1MC3 LINE L1 0 7785 6765 541 226 27 14 chrX 81949631 81949777 -80650153 + MER103 DNA DNA 9 156 -10 342 376 33 17 chrX 81949841 81950022 -80649908 + MIR SINE MIR 13 196 -66 300 331 8 58 chrX 81950073 81950194 -80649736 + L2 LINE L2 3158 3272 0 2135 128 7 0 chrX 81953008 81953298 -80646632 - AluSx SINE Alu -17 295 4 2184 118 3 10 chrX 81953410 81953724 -80646206 + AluSx SINE Alu 1 312 0 21 36 0 0 chrX 81954353 81954381 -80645549 + AT_rich Low_complexity Low_complexity 1 28 0 459 93 0 27 chrX 81954389 81954464 -80645466 - L1PA8 LINE L1 -4 6168 6096 201 250 17 50 chrX 81955214 81955274 -80644656 + L2 LINE L2 2750 2807 -507 1208 178 9 5 chrX 81955277 81955490 -80644440 + MER20 DNA MER1_type 1 214 -5 227 382 65 29 chrX 81955518 81955688 -80644242 + L2 LINE L2 2811 2986 -286 202 381 0 16 chrX 81955766 81955829 -80644101 + L2 LINE L2 3224 3285 -28 218 290 87 0 chrX 81955959 81956028 -80643902 - L2 LINE L2 -786 2528 2454 544 249 102 40 chrX 81956174 81956351 -80643579 + MIR SINE MIR 72 259 -3 285 75 0 0 chrX 81956351 81956391 -80643539 + (TTA)n Simple_repeat Simple_repeat 3 42 0 195 200 0 0 chrX 81956653 81956688 -80643242 + L2 LINE L2 3267 3301 -12 24 0 0 0 chrX 81956692 81956716 -80643214 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 81957770 81957801 -80642129 + AT_rich Low_complexity Low_complexity 1 31 0 43663 42 3 1 chrX 81957801 81963936 -80635994 - L1PA4 LINE L1 -3 6152 4 6689 231 42 17 chrX 81964138 81965926 -80634004 + L1PA16 LINE L1 3681 5423 -743 207 69 0 0 chrX 81965926 81965955 -80633975 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6689 231 42 17 chrX 81965955 81966193 -80633737 + L1PA16 LINE L1 5423 5654 -512 2354 132 5 16 chrX 81966193 81966572 -80633358 - THE1C LTR MaLR 0 375 1 9380 122 38 43 chrX 81966574 81968160 -80631770 - THE1C-int LTR MaLR -2 1578 1 2369 130 5 11 chrX 81968160 81968537 -80631393 - THE1C LTR MaLR 0 375 1 6689 231 42 17 chrX 81968537 81968957 -80630973 + L1PA16 LINE L1 5653 6157 -9 361 313 73 7 chrX 81969629 81969779 -80630151 + MIR SINE MIR 47 206 -56 295 261 133 89 chrX 81970266 81970469 -80629461 - MIR SINE MIR -43 219 8 232 396 42 0 chrX 81970643 81970739 -80629191 - L2 LINE L2 -15 3257 3158 2606 149 29 0 chrX 81971751 81972167 -80627763 + MSTA LTR MaLR 1 428 0 2825 84 59 16 chrX 81973390 81973432 -80626498 - MLT2A1 LTR ERVL 0 444 405 228 67 0 0 chrX 81973432 81973462 -80626468 + (TA)n Simple_repeat Simple_repeat 1 30 0 2825 84 59 16 chrX 81973462 81973845 -80626085 - MLT2A1 LTR ERVL -39 405 1 9645 79 5 1 chrX 81973846 81975090 -80624840 - HERVL-A1 LTR ERVL -1 5653 4405 * 16477 84 19 6 chrX 81975083 81977275 -80622655 - HERVL-A1 LTR ERVL -2380 3274 1053 291 77 0 0 chrX 81977307 81977346 -80622584 - MLT2A2 LTR ERVL -2 451 413 * 770 84 0 9 chrX 81977344 81977451 -80622479 - MLT2A1 LTR ERVL -338 106 1 1913 167 74 52 chrX 81978991 81979228 -80620702 - MSTB1 LTR MaLR 0 432 181 2070 125 33 0 chrX 81979228 81979531 -80620399 + AluSq SINE Alu 1 313 0 1913 167 74 52 chrX 81979531 81979713 -80620217 - MSTB1 LTR MaLR -251 181 4 2055 150 8 40 chrX 81979748 81980122 -80619808 - THE1B LTR MaLR 0 364 3 10784 108 21 10 chrX 81980124 81981687 -80618243 - THE1B-int LTR MaLR 0 1580 1 2194 142 8 32 chrX 81981687 81982060 -80617870 - THE1B LTR MaLR 0 364 1 384 303 38 32 chrX 81982260 81982445 -80617485 + MIR SINE MIR 7 192 -70 21 0 0 0 chrX 81983371 81983392 -80616538 + AT_rich Low_complexity Low_complexity 1 21 0 10807 154 16 16 chrX 81984946 81988112 -80611818 - L1MA1 LINE L1 -6 6296 3127 25 0 0 0 chrX 81990761 81990786 -80609144 + AT_rich Low_complexity Low_complexity 1 25 0 202 352 83 0 chrX 81991424 81991532 -80608398 + L2 LINE L2 3155 3271 -1 365 0 22 0 chrX 81991947 81991992 -80607938 + (TTTTC)n Simple_repeat Simple_repeat 4 49 0 1813 130 4 11 chrX 81991998 81992274 -80607656 - AluSx SINE Alu -38 274 1 1224 189 56 7 chrX 81992617 81992921 -80607009 + MER33 DNA MER1_type 1 310 -14 809 255 35 35 chrX 81995349 81995580 -80604350 + MIR SINE MIR 3 233 -29 874 141 71 12 chrX 81996611 81996781 -80603149 - L1MA2 LINE L1 0 6304 6125 2162 159 32 48 chrX 81997120 81997555 -80602375 - MSTA LTR MaLR 0 428 1 204 40 0 0 chrX 81998771 81998796 -80601134 + (TA)n Simple_repeat Simple_repeat 1 25 0 1571 276 63 20 chrX 81998847 81999558 -80600372 - L1MCa LINE L1 -2260 4166 3425 3558 150 50 3 chrX 81999566 82000241 -80599689 - L1MA4A LINE L1 -4 6299 5593 22 35 0 0 chrX 82000258 82000287 -80599643 + AT_rich Low_complexity Low_complexity 1 29 0 4931 102 5 21 chrX 82000290 82000631 -80599299 - L1PA13 LINE L1 -4 6159 5814 2184 108 0 7 chrX 82000631 82000937 -80598993 - AluSq SINE Alu -9 304 1 4931 102 5 21 chrX 82000937 82001352 -80598578 - L1PA13 LINE L1 -349 5814 5415 2267 164 3 14 chrX 82001352 82002043 -80597887 - L1MA4A LINE L1 -696 5607 4920 * 3170 234 44 9 chrX 82002039 82003119 -80596811 - L1MCa LINE L1 -2999 3427 2309 1400 184 7 46 chrX 82003164 82003468 -80596462 - L1MA6 LINE L1 -74 6226 5935 748 133 0 8 chrX 82003469 82003597 -80596333 - L1MA3 LINE L1 0 7724 7598 3212 172 27 5 chrX 82003603 82003891 -80596039 - L1MA3 LINE L1 -221 7503 7223 333 0 0 0 chrX 82003891 82003928 -80596002 + (TG)n Simple_repeat Simple_repeat 2 38 0 3212 172 27 5 chrX 82003928 82004231 -80595699 - L1MA3 LINE L1 -501 7223 6899 310 127 16 16 chrX 82004247 82004310 -80595620 + (TA)n Simple_repeat Simple_repeat 2 64 0 1294 208 72 15 chrX 82004314 82004579 -80595351 - AluJo SINE Alu -32 280 1 9540 185 56 24 chrX 82004579 82004767 -80595163 - L1MA3 LINE L1 -743 6822 6642 312 27 0 0 chrX 82004767 82004804 -80595126 + (TG)n Simple_repeat Simple_repeat 2 38 0 9540 185 56 24 chrX 82004804 82006501 -80593429 - L1MA3 LINE L1 -923 6642 4933 1540 193 20 17 chrX 82006501 82006801 -80593129 - AluJo SINE Alu -11 301 1 9540 185 56 24 chrX 82006801 82007216 -80592714 - L1MA3 LINE L1 -2632 4933 4533 551 218 88 0 chrX 82007476 82007646 -80592284 - L1MA3 LINE L1 -3041 4524 4340 * 2503 30 0 0 chrX 82007637 82007933 -80591997 + L1HS LINE L1 5860 6155 0 189 107 0 0 chrX 82007933 82007961 -80591969 + (A)n Simple_repeat Simple_repeat 1 28 0 2755 226 30 4 chrX 82007991 82008703 -80591227 - L1MA3 LINE L1 -3215 4350 3621 19926 20 0 0 chrX 82008705 82011836 -80588094 - L1HS LINE L1 0 6155 3025 1764 237 61 18 chrX 82011835 82012459 -80587471 - L1MA3 LINE L1 -3935 3630 2980 * 5978 101 20 4 chrX 82012471 82014184 -80585746 - L1PA11 LINE L1 -2 7610 5876 15068 220 31 18 chrX 82014188 82018695 -80581235 - L1PA11 LINE L1 -1923 5661 7 2018 159 100 58 chrX 82018699 82019500 -80580430 - L1MCa LINE L1 -4104 2322 1405 646 298 178 6 chrX 82019936 82020268 -80579662 - L2 LINE L2 0 3313 2925 1606 74 5 0 chrX 82021221 82021436 -80578494 + L1PA7 LINE L1 5932 6147 -7 23 33 0 0 chrX 82025366 82025396 -80574534 + AT_rich Low_complexity Low_complexity 1 30 0 6997 66 8 0 chrX 82025785 82027111 -80572819 + L1PA8 LINE L1 4840 6172 0 2150 133 14 23 chrX 82028425 82028777 -80571153 - THE1A LTR MaLR 0 355 7 598 90 11 22 chrX 82028775 82028864 -80571066 - THE1B LTR MaLR -276 88 1 * 1561 91 14 0 chrX 82028864 82029084 -80570846 - THE1C-int LTR MaLR 0 1580 1358 6207 109 1 54 chrX 82029084 82030065 -80569865 - THE1C-int LTR MaLR -651 929 1 2490 129 5 0 chrX 82030065 82030438 -80569492 - THE1C LTR MaLR 0 375 1 3863 162 25 4 chrX 82031164 82031888 -80568042 + L1MA8 LINE L1 5541 6279 -12 201 333 0 0 chrX 82032160 82032214 -80567716 - L2 LINE L2 -6 3266 3213 318 26 0 0 chrX 82032244 82032283 -80567647 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chrX 82032328 82032356 -80567574 + AT_rich Low_complexity Low_complexity 1 28 0 1363 115 19 19 chrX 82032997 82033206 -80566724 + L1PB4 LINE L1 5945 6153 -3 1379 158 4 8 chrX 82034178 82034438 -80565492 + L1MA8 LINE L1 6028 6286 -5 1521 185 58 22 chrX 82034606 82034919 -80565011 + MLT1D LTR MaLR 140 463 -42 1141 127 11 0 chrX 82035432 82035621 -80564309 - L1MA2 LINE L1 -1 6303 6113 13789 168 24 26 chrX 82035637 82037134 -80562796 - L1MA2 LINE L1 -2 7721 6223 2274 106 0 3 chrX 82037134 82037446 -80562484 - AluSq SINE Alu -2 311 1 13789 168 24 26 chrX 82037446 82039751 -80560179 - L1MA2 LINE L1 -1500 6223 3915 279 0 0 0 chrX 82039751 82039782 -80560148 + (TA)n Simple_repeat Simple_repeat 2 32 0 13789 168 24 26 chrX 82039782 82041044 -80558886 - L1MA2 LINE L1 -3808 3915 2669 3907 151 28 38 chrX 82041044 82041837 -80558093 - LTR1 LTR ERV1 0 785 1 13789 168 24 26 chrX 82041837 82042990 -80556940 - L1MA2 LINE L1 -5054 2669 1515 363 204 75 21 chrX 82043446 82043539 -80556391 + U6 snRNA snRNA 9 106 -1 190 372 164 26 chrX 82043541 82043772 -80556158 + L2 LINE L2 2995 3257 -15 950 188 19 46 chrX 82044451 82044712 -80555218 + L1MA7 LINE L1 6038 6291 0 3072 12 0 0 chrX 82044838 82045184 -80554746 - L1PA2 LINE L1 -391 5764 5419 3185 26 5 0 chrX 82045184 82045563 -80554367 + L1PA2 LINE L1 5775 6155 0 1772 161 3 7 chrX 82045960 82046252 -80553678 + AluJb SINE Alu 1 291 -21 26 0 0 0 chrX 82047543 82047569 -80552361 + AT_rich Low_complexity Low_complexity 1 26 0 2186 140 51 0 chrX 82047698 82048070 -80551860 + L1MA6 LINE L1 5906 6296 -4 574 248 248 5 chrX 82048296 82048498 -80551432 + MIR SINE MIR 12 262 0 415 256 139 0 chrX 82049149 82049286 -80550644 + MIR SINE MIR 80 235 -27 338 252 87 0 chrX 82050331 82050434 -80549496 + MIR SINE MIR 75 186 -76 534 315 11 33 chrX 82050639 82050823 -80549107 + MIR3 SINE MIR 20 199 -9 523 236 7 197 chrX 82050846 82050996 -80548934 + MIR SINE MIR 1 65 -197 955 120 54 0 chrX 82050996 82051163 -80548767 + L1MA6 LINE L1 6125 6300 0 523 236 7 197 chrX 82051163 82051317 -80548613 + MIR SINE MIR 65 247 -15 1149 115 86 5 chrX 82051865 82052074 -80547856 + L1MA8 LINE L1 6065 6290 -1 327 277 60 12 chrX 82053105 82053188 -80546742 - MER5B DNA MER1_type -88 90 4 391 299 31 8 chrX 82054168 82054295 -80545635 + MIR3 SINE MIR 32 161 -47 674 153 38 15 chrX 82054382 82054398 -80545532 - L1MB1 LINE L1 -205 5963 5949 308 161 16 0 chrX 82054398 82054460 -80545470 - L1MB1 LINE L1 -1 6167 6105 674 153 38 15 chrX 82054460 82054574 -80545356 - L1MB1 LINE L1 -219 5949 5830 4608 116 8 31 chrX 82054860 82055626 -80544304 - L1PA16 LINE L1 -2 6164 5417 180 200 0 0 chrX 82055979 82056019 -80543911 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 227 320 39 0 chrX 82056031 82056109 -80543821 - MIR SINE MIR -78 184 104 1482 135 44 47 chrX 82057259 82057445 -80542485 - MER33 DNA MER1_type -2263 322 137 204 67 0 0 chrX 82057445 82057475 -80542455 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1748 138 3 45 chrX 82057477 82057767 -80542163 - AluSg SINE Alu -30 280 3 1482 135 44 47 chrX 82057767 82057896 -80542034 - MER33 DNA MER1_type -2449 136 5 1302 182 0 55 chrX 82057939 82058214 -80541716 + AluJo SINE Alu 1 260 -52 295 230 54 0 chrX 82058252 82058326 -80541604 + MIR SINE MIR 84 161 -101 265 203 17 17 chrX 82058406 82058465 -80541465 + MIR SINE MIR 181 239 -23 25 90 0 0 chrX 82058508 82058575 -80541355 + AT_rich Low_complexity Low_complexity 1 67 0 1698 180 33 27 chrX 82059015 82059382 -80540548 - LTR52 LTR ERVL -2 419 51 457 216 270 27 chrX 82059609 82059757 -80540173 + MER5A DNA MER1_type 1 184 -5 2050 140 0 0 chrX 82060123 82060416 -80539514 + AluSx SINE Alu 1 293 -19 246 354 88 52 chrX 82061836 82062028 -80537902 - MIR3 SINE MIR -2 206 8 731 237 23 47 chrX 82062244 82062459 -80537471 + MER63A DNA MER1_type 1 210 0 609 52 0 0 chrX 82064408 82064485 -80535445 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1284 94 139 0 chrX 82065176 82065378 -80534552 - MER30 DNA MER1_type 0 230 1 209 306 133 10 chrX 82066607 82066705 -80533225 - MIR SINE MIR -127 135 26 342 0 0 0 chrX 82066889 82066927 -80533003 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 594 167 0 0 chrX 82066937 82067051 -80532879 - L1MB2 LINE L1 -14 6157 6044 2076 154 3 3 chrX 82067690 82068041 -80531889 - L1MB2 LINE L1 -10 6161 5811 1587 239 127 31 chrX 82068418 82068798 -80531132 - MLT1E2 LTR MaLR 0 626 181 1782 173 3 3 chrX 82068798 82069105 -80530825 - AluJo SINE Alu -5 307 1 1587 239 127 31 chrX 82069105 82069244 -80530686 - MLT1E2 LTR MaLR -445 181 57 207 0 0 0 chrX 82069875 82069898 -80530032 + (A)n Simple_repeat Simple_repeat 1 23 0 2122 124 0 3 chrX 82070688 82070986 -80528944 + AluSx SINE Alu 1 297 -15 24 53 0 0 chrX 82071377 82071415 -80528515 + AT_rich Low_complexity Low_complexity 1 38 0 197 353 0 15 chrX 82073971 82074039 -80525891 - L2 LINE L2 -50 3222 3156 188 359 0 51 chrX 82074045 82074123 -80525807 + L2 LINE L2 3197 3270 -2 394 259 0 53 chrX 82074475 82074606 -80525324 - L2 LINE L2 -31 3282 3159 184 302 0 38 chrX 82077528 82077581 -80522349 - L2 LINE L2 -13 3259 3209 311 344 74 17 chrX 82077731 82077961 -80521969 - L2 LINE L2 -212 3060 2818 316 333 140 25 chrX 82078256 82078541 -80521389 - L2 LINE L2 -654 2660 2343 557 306 75 5 chrX 82078822 82079008 -80520922 - MIR SINE MIR -8 254 56 30 27 0 0 chrX 82079008 82079045 -80520885 + AT_rich Low_complexity Low_complexity 1 37 0 17809 189 11 15 chrX 82079045 82079829 -80520101 - L1PA14 LINE L1 -76 6085 5299 2315 90 0 7 chrX 82079829 82080129 -80519801 - AluY SINE Alu -13 298 1 17809 189 11 15 chrX 82080129 82082283 -80517647 - L1PA14 LINE L1 -862 5299 3162 180 0 0 0 chrX 82082283 82082303 -80517627 + (TTG)n Simple_repeat Simple_repeat 2 21 0 17809 189 11 15 chrX 82082303 82083913 -80516017 - L1PA14 LINE L1 -2999 3162 1546 231 245 0 0 chrX 82084917 82084970 -80514960 - L2 LINE L2 0 3313 3261 1844 203 100 97 chrX 82085909 82086579 -80513351 - LTR8A LTR ERV1 -55 672 1 483 277 25 13 chrX 82086579 82086738 -80513192 - HUERS-P1 LTR ERV1 0 6263 6103 273 119 0 0 chrX 82087246 82087288 -80512642 + (ATGGTG)n Simple_repeat Simple_repeat 6 47 0 362 383 0 13 chrX 82087397 82087546 -80512384 - MIR SINE MIR -70 192 46 477 232 43 14 chrX 82089600 82089614 -80510316 - L1MA10 LINE L1 -1 6333 6320 1836 250 72 26 chrX 82089614 82090271 -80509659 - L1ME1 LINE L1 -4 6162 5476 2873 117 19 82 chrX 82091205 82091457 -80508473 - L1MA4A LINE L1 0 6303 6037 1596 214 3 3 chrX 82091457 82091756 -80508174 - AluJo SINE Alu -13 299 1 2873 117 19 82 chrX 82091756 82091888 -80508042 - L1MA4A LINE L1 -266 6037 5898 2392 78 3 0 chrX 82091888 82092183 -80507747 - AluY SINE Alu -15 296 1 2873 117 19 82 chrX 82092183 82092354 -80507576 - L1MA4A LINE L1 -405 5898 5783 525 32 0 0 chrX 82092354 82092417 -80507513 + (CA)n Simple_repeat Simple_repeat 2 64 0 2873 117 19 82 chrX 82092417 82092448 -80507482 - L1MA4A LINE L1 -520 5783 5752 22 35 0 0 chrX 82092574 82092603 -80507327 + AT_rich Low_complexity Low_complexity 1 29 0 1562 165 176 22 chrX 82092724 82093093 -80506837 + MSTA LTR MaLR 3 428 0 9527 138 7 38 chrX 82093095 82094717 -80505213 + MSTA-int LTR MaLR 3 1575 -5 1224 221 97 30 chrX 82094722 82094893 -80505037 + THE1B LTR MaLR 1 159 -205 267 31 0 0 chrX 82094893 82094925 -80505005 + (TC)n Simple_repeat Simple_repeat 2 33 0 1224 221 97 30 chrX 82094925 82095092 -80504838 + THE1B LTR MaLR 159 362 -2 1093 202 4 25 chrX 82095448 82095691 -80504239 - AluJo SINE Alu -1 311 74 24 32 0 0 chrX 82095693 82095724 -80504206 + AT_rich Low_complexity Low_complexity 1 31 0 29 60 0 0 chrX 82097290 82097340 -80502590 + AT_rich Low_complexity Low_complexity 1 50 0 330 158 0 0 chrX 82097711 82097768 -80502162 - MSTB2 LTR MaLR 0 457 401 5595 119 27 6 chrX 82097769 82098032 -80501898 + MER4D LTR ERV1 1 257 -615 5389 53 31 0 chrX 82098032 82098732 -80501198 - LTR30 LTR ERV1 0 722 1 5595 119 27 6 chrX 82098732 82099322 -80500608 + MER4D LTR ERV1 257 872 0 225 146 24 0 chrX 82099322 82099361 -80500569 - MSTB2 LTR MaLR -54 342 303 2546 254 22 67 chrX 82099368 82100192 -80499738 - MLT-int LTR MaLR -628 1107 321 2248 78 79 5 chrX 82100192 82100559 -80499371 + LTR7 LTR ERV1 1 450 0 1334 218 16 6 chrX 82100559 82100880 -80499050 - MSTD-int LTR MaLR -1410 325 2 1264 219 133 8 chrX 82100882 82101234 -80498696 - MSTD LTR MaLR 0 396 1 1754 152 60 41 chrX 82101458 82101826 -80498104 + THE1C LTR MaLR 1 375 0 667 283 22 5 chrX 82102090 82102274 -80497656 + MIR SINE MIR 76 262 0 21 0 0 0 chrX 82103229 82103250 -80496680 + AT_rich Low_complexity Low_complexity 1 21 0 478 310 93 31 chrX 82104100 82104326 -80495604 - MIR SINE MIR -10 252 13 1932 216 24 28 chrX 82104619 82105078 -80494852 + MSTB2 LTR MaLR 1 457 0 222 250 0 18 chrX 82105380 82105436 -80494494 - L2 LINE L2 -253 3060 3006 1067 239 14 0 chrX 82105441 82105659 -80494271 + L1PA13 LINE L1 2 222 -6565 * 4204 183 28 64 chrX 82105658 82106134 -80493796 + L1PA13 LINE L1 1535 2026 -4771 2444 11 0 0 chrX 82106134 82106410 -80493520 + L1PA3 LINE L1 5879 6155 0 4204 183 28 64 chrX 82106410 82107284 -80492646 + L1PA13 LINE L1 2026 2868 -3929 1360 146 39 0 chrX 82107294 82107500 -80492430 - AluSx SINE Alu -92 220 7 2862 139 26 0 chrX 82107507 82107968 -80491962 + L1PA15 LINE L1 5686 6158 -7 23 0 0 0 chrX 82108494 82108517 -80491413 + AT_rich Low_complexity Low_complexity 1 23 0 1297 55 0 11 chrX 82108732 82108913 -80491017 + (TTC)n Simple_repeat Simple_repeat 2 180 0 2111 97 3 39 chrX 82108915 82109225 -80490705 - AluSg SINE Alu -11 299 1 396 0 0 0 chrX 82109936 82109980 -80489950 + (CA)n Simple_repeat Simple_repeat 2 45 0 34 0 0 0 chrX 82111973 82112007 -80487923 + AT_rich Low_complexity Low_complexity 1 34 0 2124 166 35 31 chrX 82115394 82115943 -80483987 - MLT2A2 LTR ERVL 0 554 1 282 71 0 24 chrX 82115943 82115985 -80483945 - HERVL-A2 LTR ERVL 0 5654 5614 276 154 0 0 chrX 82116415 82116467 -80483463 + (TG)n Simple_repeat Simple_repeat 1 52 0 430 269 198 16 chrX 82118706 82118888 -80481042 - MIR SINE MIR -45 217 3 195 298 135 10 chrX 82119019 82119123 -80480807 + MIR SINE MIR 86 202 -60 2651 220 26 2 chrX 82119123 82119163 -80480767 - MLT2B3 LTR ERVL 0 554 516 384 22 0 0 chrX 82119163 82119208 -80480722 + (TA)n Simple_repeat Simple_repeat 1 45 0 315 0 0 0 chrX 82119207 82119242 -80480688 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 2651 220 26 2 chrX 82119208 82119742 -80480188 - MLT2B3 LTR ERVL -38 516 1 26372 25 1 0 chrX 82119769 82122916 -80477014 - L1PA2 LINE L1 -1409 4737 1587 7908 12 0 0 chrX 82122916 82124325 -80475605 + L1PA2 LINE L1 4747 6155 0 289 263 10 10 chrX 82124335 82124434 -80475496 + L1M4 LINE L1 4280 4378 -1768 216 0 0 0 chrX 82124643 82124667 -80475263 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 85 0 0 chrX 82125867 82125926 -80474004 + AT_rich Low_complexity Low_complexity 1 59 0 257 374 16 8 chrX 82126034 82126157 -80473773 + MIR3 SINE MIR 4 127 -81 294 265 53 73 chrX 82127736 82127769 -80472161 + L2 LINE L2 3125 3157 -115 1017 154 33 16 chrX 82127769 82127951 -80471979 + MER5A DNA MER1_type 2 186 -3 294 265 53 73 chrX 82127951 82128068 -80471862 + L2 LINE L2 3157 3272 0 204 40 0 0 chrX 82129131 82129156 -80470774 + (CAT)n Simple_repeat Simple_repeat 3 27 0 262 308 115 24 chrX 82129213 82129365 -80470565 - MIR SINE MIR -62 146 16 218 278 0 0 chrX 82129395 82129449 -80470481 - L2 LINE L2 -5 3267 3214 190 324 52 62 chrX 82129702 82129912 -80470018 - L2 LINE L2 -541 2773 2566 3237 172 43 10 chrX 82130202 82130877 -80469053 + L1MC1 LINE L1 5631 6327 -6 270 333 83 0 chrX 82131896 82132016 -80467914 + L2 LINE L2 2248 2377 -937 6463 79 18 1 chrX 82132031 82133155 -80466775 + L1PA10 LINE L1 5021 6158 -10 1735 244 29 3 chrX 82133162 82133704 -80466226 - L1M LINE L1 -810 5336 4793 1688 34 0 5 chrX 82133707 82133916 -80466014 - L1PA4 LINE L1 0 6155 5948 970 42 0 0 chrX 82133918 82134038 -80465892 + L1PA4 LINE L1 5847 5966 -189 1601 218 73 121 chrX 82134052 82134451 -80465479 - L1M4 LINE L1 -1361 4785 4445 1701 52 0 0 chrX 82134451 82134662 -80465268 + L1PA5 LINE L1 5939 6149 -5 1601 218 73 121 chrX 82134662 82135086 -80464844 - L1M4 LINE L1 -1701 4445 4002 200 296 0 9 chrX 82135512 82135627 -80464303 + GA-rich Low_complexity Low_complexity 2 115 0 22 56 0 0 chrX 82137040 82137076 -80462854 + AT_rich Low_complexity Low_complexity 1 36 0 254 339 101 0 chrX 82138471 82138580 -80461350 - L2 LINE L2 0 3272 3153 2303 172 34 5 chrX 82139062 82139480 -80460450 + MSTB1 LTR MaLR 3 432 0 31 26 0 0 chrX 82139806 82139844 -80460086 + AT_rich Low_complexity Low_complexity 1 38 0 342 123 0 0 chrX 82139897 82139954 -80459976 - L1MD3 LINE L1 -24 7971 7915 3243 222 95 10 chrX 82139957 82140733 -80459197 + MER21B LTR ERV1 1 842 -21 522 205 24 8 chrX 82140756 82140883 -80459047 - L1MC3 LINE L1 -83 7702 7574 1904 224 86 40 chrX 82140896 82141501 -80458429 - L1MC3 LINE L1 -1835 5950 5311 2193 125 0 0 chrX 82141501 82141804 -80458126 - AluSq SINE Alu -10 303 1 1904 224 86 40 chrX 82141804 82141864 -80458066 - L1MC3 LINE L1 -2474 5311 5255 402 156 32 82 chrX 82141867 82141983 -80457947 + L1MC4 LINE L1 5745 5852 -482 450 252 0 0 chrX 82141984 82142099 -80457831 - L1MC3 LINE L1 -907 5239 5125 10629 234 30 22 chrX 82142263 82145918 -80454012 + L1PA13 LINE L1 1236 4937 -1860 343 0 0 0 chrX 82145967 82146009 -80453921 - L1PA3 LINE L1 -3 6152 6111 1753 263 53 65 chrX 82146034 82146182 -80453748 - L1MC3 LINE L1 -2208 3938 3790 216 67 0 0 chrX 82146182 82146212 -80453718 + (TG)n Simple_repeat Simple_repeat 2 31 0 1753 263 53 65 chrX 82146212 82147052 -80452878 - L1MC3 LINE L1 -2356 3790 2962 5730 207 31 12 chrX 82147131 82147812 -80452118 - L1PA16 LINE L1 -59 6107 5441 6269 204 14 11 chrX 82147812 82150031 -80449899 - L1PA15 LINE L1 -10 6155 3943 5730 207 31 12 chrX 82150031 82151562 -80448368 - L1PA16 LINE L1 -725 5441 3863 467 245 43 22 chrX 82151574 82151758 -80448172 - L1PA16 LINE L1 -2880 3266 3079 2136 211 65 18 chrX 82151785 82152354 -80447576 - L1MC2 LINE L1 0 6624 6029 681 240 120 26 chrX 82152365 82152870 -80447060 - LTR50 LTR ERVL -105 690 1 9072 231 39 41 chrX 82152870 82153228 -80446702 - L1MC2 LINE L1 -581 6043 5686 5076 34 2 14 chrX 82153228 82153853 -80446077 - L1PA4 LINE L1 -3 6152 5536 9072 231 39 41 chrX 82153853 82153953 -80445977 - L1MC2 LINE L1 -938 5686 5587 2232 105 0 0 chrX 82153953 82154247 -80445683 - AluSg SINE Alu -16 294 1 9072 231 39 41 chrX 82154247 82155810 -80444120 - L1MC2 LINE L1 -1037 5587 4023 1954 135 0 0 chrX 82155810 82156136 -80443794 - AluSx SINE Alu 0 328 3 9072 231 39 41 chrX 82156136 82157533 -80442397 - L1MC2 LINE L1 -2601 4023 2615 1336 199 45 34 chrX 82157533 82157824 -80442106 - AluJo SINE Alu -18 294 1 9072 231 39 41 chrX 82157824 82158140 -80441790 - L1MC2 LINE L1 -4009 2615 2300 183 173 0 0 chrX 82158146 82158198 -80441732 + (TA)n Simple_repeat Simple_repeat 1 52 0 3341 214 92 22 chrX 82158224 82159689 -80440241 - L1MB5 LINE L1 -78 6907 5317 2106 239 41 19 chrX 82159687 82160266 -80439664 - L1MB5 LINE L1 -3104 3853 3255 * 2159 109 85 15 chrX 82160266 82160606 -80439324 - THE1B LTR MaLR 0 364 1 2106 239 41 19 chrX 82160606 82160709 -80439221 - L1MB5 LINE L1 -3702 3255 3156 * 2230 225 37 30 chrX 82160703 82161212 -80438718 - L1MB5 LINE L1 -5641 1218 703 3158 43 2 17 chrX 82161212 82161627 -80438303 - L1PA5 LINE L1 0 6154 5746 2230 225 37 30 chrX 82161627 82161709 -80438221 - L1MB5 LINE L1 -6156 703 623 1831 169 13 0 chrX 82161723 82162207 -80437723 - AluSx SINE Alu 0 488 1 1552 316 45 4 chrX 82162211 82162726 -80437204 - L1MB5 LINE L1 -6274 585 50 21 57 0 0 chrX 82163685 82163720 -80436210 + AT_rich Low_complexity Low_complexity 1 35 0 433 186 41 31 chrX 82163891 82163988 -80435942 + MER3 DNA MER1_type 29 126 -83 341 339 0 9 chrX 82164139 82164251 -80435679 - MIR SINE MIR -123 139 29 2540 237 80 12 chrX 82164285 82165379 -80434551 - L1ME1 LINE L1 -7 6954 5797 1791 165 25 66 chrX 82165379 82165786 -80434144 - MLT1B LTR MaLR 0 390 1 999 186 59 14 chrX 82165786 82166006 -80433924 - MLT1B-int LTR MaLR 0 1371 1142 1047 258 112 23 chrX 82166011 82166620 -80433310 - L1ME1 LINE L1 -2912 4029 3367 491 274 29 25 chrX 82166703 82166907 -80433023 - L1ME1 LINE L1 -4317 2805 2601 612 261 106 114 chrX 82166972 82167596 -80432334 + MLT1E3 LTR MaLR 1 619 -5 705 269 17 36 chrX 82167615 82167987 -80431943 - L1ME1 LINE L1 -4603 2519 1967 708 257 91 33 chrX 82168016 82168605 -80431325 - L1ME1 LINE L1 -4888 1535 1230 * 4085 207 13 16 chrX 82168598 82170009 -80429921 - L1 LINE L1 -2999 4566 3161 4566 15 0 0 chrX 82170010 82170529 -80429401 - L1PA3 LINE L1 -5 6150 5632 2655 13 0 0 chrX 82170529 82170832 -80429098 + L1PA3 LINE L1 5343 5645 -510 * 16070 185 24 22 chrX 82170825 82172711 -80427219 - L1 LINE L1 -4387 3178 1297 936 45 25 32 chrX 82172711 82172868 -80427062 + (TTTC)n Simple_repeat Simple_repeat 1 156 0 1673 137 7 42 chrX 82172868 82173153 -80426777 - AluJb SINE Alu -32 280 6 16070 185 24 22 chrX 82173153 82174369 -80425561 - L1 LINE L1 -6268 1297 67 252 0 0 0 chrX 82174369 82174397 -80425533 + (TG)n Simple_repeat Simple_repeat 1 28 0 16070 185 24 22 chrX 82174397 82174456 -80425474 - L1 LINE L1 -7498 67 10 4279 196 81 7 chrX 82174463 82175301 -80424629 - L1M1 LINE L1 -6649 916 17 340 324 113 7 chrX 82177709 82177851 -80422079 - MIR SINE MIR -74 188 32 198 0 0 0 chrX 82178177 82178199 -80421731 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 5684 160 12 9 chrX 82178200 82179941 -80419989 - L1PA13 LINE L1 -23 6140 4398 221 317 17 0 chrX 82180282 82180342 -80419588 + MIR SINE MIR 92 152 -110 1210 226 68 0 chrX 82180405 82180671 -80419259 + AluJo SINE Alu 1 284 -28 22 0 0 0 chrX 82183951 82183973 -80415957 + AT_rich Low_complexity Low_complexity 1 22 0 669 285 45 41 chrX 82183974 82184216 -80415714 + MIR SINE MIR 20 262 0 190 360 24 92 chrX 82185441 82185605 -80414325 - L2 LINE L2 -4 3268 3116 298 376 67 38 chrX 82185786 82186158 -80413772 - L2 LINE L2 -337 2977 2595 2625 32 3 0 chrX 82186179 82186489 -80413441 + AluY SINE Alu 1 311 0 450 0 0 0 chrX 82187621 82187671 -80412259 + (TG)n Simple_repeat Simple_repeat 2 51 0 2592 115 0 6 chrX 82187980 82188346 -80411584 - THE1B LTR MaLR 0 364 1 7781 144 16 3 chrX 82188346 82189764 -80410166 - THE1B-int LTR MaLR 0 1580 193 23 33 0 0 chrX 82189913 82189943 -80409987 + AT_rich Low_complexity Low_complexity 1 30 0 238 393 41 8 chrX 82190741 82190863 -80409067 - MIR SINE MIR -62 146 21 1606 165 47 18 chrX 82192012 82192291 -80407639 + AluJb SINE Alu 1 287 -25 21 57 0 0 chrX 82192291 82192326 -80407604 + AT_rich Low_complexity Low_complexity 1 35 0 474 331 41 0 chrX 82192634 82192779 -80407151 + MIR SINE MIR 39 189 -73 381 162 0 0 chrX 82192779 82192847 -80407083 + (TA)n Simple_repeat Simple_repeat 2 69 0 1079 86 14 0 chrX 82193109 82193249 -80406681 - AluSg/x SINE Alu -17 295 154 281 297 40 0 chrX 82194429 82194503 -80405427 - MIR3 SINE MIR -31 177 101 320 345 0 35 chrX 82194704 82194817 -80405113 + MIR3 SINE MIR 64 172 -36 324 70 0 0 chrX 82194896 82194939 -80404991 + (CA)n Simple_repeat Simple_repeat 1 43 0 515 187 89 0 chrX 82194992 82195115 -80404815 + L1MA10 LINE L1 4873 5006 -1140 * 6141 213 22 59 chrX 82195087 82195481 -80404449 + L1PB4 LINE L1 2715 3122 -3034 239 0 0 31 chrX 82195481 82195513 -80404417 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6141 213 22 59 chrX 82195513 82196363 -80403567 + L1PB4 LINE L1 3122 4001 -2155 1604 141 186 18 chrX 82196363 82196697 -80403233 - MSTA LTR MaLR -38 390 1 6141 213 22 59 chrX 82196697 82197322 -80402608 + L1PB4 LINE L1 4001 4647 -1509 9267 178 32 47 chrX 82197322 82198576 -80401354 + L1PA13 LINE L1 3536 4808 -1355 2167 124 0 3 chrX 82198576 82198890 -80401040 + AluSq SINE Alu 1 313 0 9267 178 32 47 chrX 82198890 82200299 -80399631 + L1PA13 LINE L1 4808 6155 -8 6141 213 22 59 chrX 82200299 82201461 -80398469 + L1PB4 LINE L1 4647 5783 -373 17906 178 17 9 chrX 82201468 82208481 -80391449 + L1PA14 LINE L1 5 7599 0 1971 184 22 5 chrX 82208481 82208849 -80391081 + L1PB4 LINE L1 5769 6144 -12 1348 221 10 0 chrX 82208868 82209162 -80390768 + L1MA10 LINE L1 5005 5301 -845 337 204 11 11 chrX 82209165 82209253 -80390677 + L1PB4 LINE L1 6069 6156 0 4623 170 30 37 chrX 82209263 82210280 -80389650 + L1MA10 LINE L1 5325 6333 -1 556 184 0 0 chrX 82211081 82211190 -80388740 + L1MA10 LINE L1 6219 6327 -7 28 29 0 0 chrX 82211190 82211225 -80388705 + AT_rich Low_complexity Low_complexity 1 35 0 265 258 106 4 chrX 82211420 82211552 -80388378 + MIR3 SINE MIR 40 188 -50 29 28 0 0 chrX 82213114 82213150 -80386780 + AT_rich Low_complexity Low_complexity 1 36 0 520 165 11 0 chrX 82213310 82213401 -80386529 + L1PA16 LINE L1 6066 6157 -9 22 0 0 0 chrX 82213401 82213423 -80386507 + AT_rich Low_complexity Low_complexity 1 22 0 398 132 13 0 chrX 82214246 82214322 -80385608 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 5257 143 31 3 chrX 82214352 82215790 -80384140 - L1PA14 LINE L1 -6 6858 5407 344 280 25 42 chrX 82215810 82215928 -80384002 - L1M2 LINE L1 -6525 324 209 350 158 0 0 chrX 82215928 82215985 -80383945 - L1PA14 LINE L1 -1588 5261 5205 650 102 0 0 chrX 82215987 82216075 -80383855 - L1PA14 LINE L1 -4194 2655 2568 2311 102 0 3 chrX 82216075 82216378 -80383552 - AluSx SINE Alu -10 302 1 239 371 18 0 chrX 82216407 82216577 -80383353 - L1PA12 LINE L1 -7402 179 7 243 0 0 0 chrX 82216599 82216626 -80383304 + (A)n Simple_repeat Simple_repeat 1 27 0 269 304 72 16 chrX 82217048 82217173 -80382757 - MIR SINE MIR 0 262 131 263 295 132 8 chrX 82218723 82218852 -80381078 - MIR3 SINE MIR -6 202 58 222 220 0 0 chrX 82219232 82219291 -80380639 + (TA)n Simple_repeat Simple_repeat 2 60 0 2703 124 43 27 chrX 82219291 82219807 -80380123 + L1MA3 LINE L1 5782 6305 0 27 49 0 0 chrX 82219822 82219863 -80380067 + AT_rich Low_complexity Low_complexity 1 41 0 317 306 63 0 chrX 82221697 82221808 -80378122 - L3b LINE CR1 -152 1431 1314 459 301 46 12 chrX 82222630 82222803 -80377127 - L3 LINE CR1 -1123 454 276 21 36 0 0 chrX 82222904 82222932 -80376998 + AT_rich Low_complexity Low_complexity 1 28 0 2944 151 14 68 chrX 82223550 82224193 -80375737 - L1MB7 LINE L1 -13 6171 5564 2118 67 21 21 chrX 82224733 82225017 -80374913 + AluY SINE Alu 11 294 -17 22 70 0 0 chrX 82225415 82225458 -80374472 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chrX 82226660 82226682 -80373248 + AT_rich Low_complexity Low_complexity 1 22 0 218 299 0 72 chrX 82227726 82227823 -80372107 - MIR SINE MIR -91 171 82 23 54 0 0 chrX 82228160 82228197 -80371733 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chrX 82228705 82228725 -80371205 + (TG)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chrX 82228724 82228744 -80371186 + (GA)n Simple_repeat Simple_repeat 1 20 0 508 281 22 28 chrX 82228925 82229103 -80370827 + MIR3 SINE MIR 17 193 -15 1863 129 32 32 chrX 82229375 82229684 -80370246 + AluSx SINE Alu 1 309 -3 916 107 7 7 chrX 82229695 82229844 -80370086 + (GGAA)n Simple_repeat Simple_repeat 4 152 0 1326 33 6 16 chrX 82229845 82230027 -80369903 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 26 30 0 0 chrX 82231375 82231408 -80368522 + AT_rich Low_complexity Low_complexity 1 33 0 286 277 76 94 chrX 82231840 82232064 -80367866 - MIR SINE MIR -12 250 31 26 30 0 0 chrX 82232857 82232890 -80367040 + AT_rich Low_complexity Low_complexity 1 33 0 230 209 119 15 chrX 82233088 82233155 -80366775 + MIR SINE MIR 71 144 -64 1920 151 127 16 chrX 82233776 82234161 -80365769 + MSTA LTR MaLR 1 428 0 8606 187 20 13 chrX 82234161 82235465 -80364465 + MSTA-int LTR MaLR 1 1320 -331 2492 74 3 6 chrX 82235465 82235777 -80364153 + AluY SINE Alu 1 311 0 8606 187 20 13 chrX 82235777 82236112 -80363818 + MSTA-int LTR MaLR 1320 1651 0 1780 143 179 8 chrX 82236112 82236475 -80363455 + MSTA LTR MaLR 1 425 -3 27 0 0 0 chrX 82237560 82237587 -80362343 + AT_rich Low_complexity Low_complexity 1 27 0 417 264 0 9 chrX 82237595 82237701 -80362229 - MIR3 SINE MIR -3 205 101 1698 183 3 3 chrX 82237814 82238104 -80361826 + AluJb SINE Alu 1 290 -22 668 161 290 0 chrX 82238905 82239067 -80360863 + MER3 DNA MER1_type 1 209 0 23 54 0 0 chrX 82241518 82241555 -80358375 + AT_rich Low_complexity Low_complexity 1 37 0 210 37 0 0 chrX 82242002 82242029 -80357901 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 387 0 0 0 chrX 82242028 82242071 -80357859 + (TG)n Simple_repeat Simple_repeat 2 44 0 1441 171 53 33 chrX 82243060 82243359 -80356571 - AluJo SINE Alu -7 305 1 402 114 0 0 chrX 82243417 82243487 -80356443 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 1395 174 93 4 chrX 82243732 82243991 -80355939 + AluJo SINE Alu 1 282 -30 237 65 0 0 chrX 82243991 82244022 -80355908 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 287 83 14 42 chrX 82244021 82244093 -80355837 + (TA)n Simple_repeat Simple_repeat 1 70 0 359 288 113 67 chrX 82244713 82244953 -80354977 + MIR SINE MIR 1 251 -11 608 261 103 8 chrX 82246141 82246375 -80353555 - MIR SINE MIR -1 261 6 25 51 0 0 chrX 82247104 82247143 -80352787 + AT_rich Low_complexity Low_complexity 1 39 0 23 78 0 0 chrX 82247355 82247406 -80352524 + AT_rich Low_complexity Low_complexity 1 51 0 419 211 73 0 chrX 82247463 82247572 -80352358 - Charlie7 DNA MER1_type -2078 534 418 389 286 146 50 chrX 82247607 82247908 -80352022 - Charlie7 DNA MER1_type -2271 341 12 1547 179 76 13 chrX 82248055 82248356 -80351574 - MSTA LTR MaLR -106 322 3 2060 121 0 0 chrX 82248633 82248940 -80350990 - AluSc SINE Alu 0 309 3 6052 69 1 0 chrX 82249681 82250466 -80349464 + L1PA7 LINE L1 5369 6154 0 247 409 7 22 chrX 82250708 82250845 -80349085 - L2 LINE L2 -620 2694 2560 334 327 67 10 chrX 82250926 82251030 -80348900 + L2 LINE L2 3185 3294 -19 185 267 100 78 chrX 82251053 82251143 -80348787 - L2 LINE L2 -896 2418 2327 838 196 5 55 chrX 82251196 82251415 -80348515 + MER3 DNA MER1_type 2 209 0 1618 187 31 96 chrX 82253630 82253740 -80346190 + MLT1B LTR MaLR 1 117 -273 1207 86 29 0 chrX 82253740 82253915 -80346015 + L1MA1 LINE L1 6123 6302 0 1618 187 31 96 chrX 82253915 82254221 -80345709 + MLT1B LTR MaLR 117 390 0 1289 38 12 0 chrX 82254630 82254790 -80345140 - L1PA5 LINE L1 -2 6152 5991 25 31 0 0 chrX 82255001 82255033 -80344897 + AT_rich Low_complexity Low_complexity 1 32 0 274 123 62 77 chrX 82256115 82256180 -80343750 + L1ME LINE L1 5600 5663 -458 405 295 49 78 chrX 82257855 82257924 -80342006 + MIR SINE MIR 5 74 -188 2265 93 3 10 chrX 82257924 82258224 -80341706 - AluSq SINE Alu -15 298 1 405 295 49 78 chrX 82258224 82258398 -80341532 + MIR SINE MIR 74 241 -21 3498 220 83 51 chrX 82258914 82260933 -80338997 + L1MCb LINE L1 1 2077 -4487 1822 147 13 29 chrX 82260933 82261247 -80338683 - AluJb SINE Alu -3 309 1 3498 220 83 51 chrX 82261247 82261305 -80338625 + L1MCb LINE L1 2077 2132 -4432 1849 192 23 30 chrX 82261306 82261709 -80338221 + L1MCb LINE L1 2739 3140 -3424 1970 146 41 36 chrX 82261709 82262071 -80337859 - THE1B LTR MaLR 0 364 1 1849 192 23 30 chrX 82262071 82262094 -80337836 + L1MCb LINE L1 3140 3162 -3402 2587 216 14 78 chrX 82262107 82262936 -80336994 - L1P LINE L1 -2989 3157 2382 4992 198 5 20 chrX 82262936 82264014 -80335916 + L1P LINE L1 3171 4231 -1915 2663 139 2 2 chrX 82264014 82264443 -80335487 + L1PA15 LINE L1 5729 6158 -7 9921 200 24 25 chrX 82264443 82267860 -80332070 + L1PA14 LINE L1 3165 6568 -1 5143 133 4 5 chrX 82267864 82268667 -80331263 + L1PB3 LINE L1 5353 6154 0 714 217 30 41 chrX 82268673 82268906 -80331024 + L1MC2 LINE L1 2042 2239 -4187 41 0 0 0 chrX 82268913 82268954 -80330976 + AT_rich Low_complexity Low_complexity 1 41 0 8947 234 31 14 chrX 82268954 82270048 -80329882 + L1MC2 LINE L1 2965 4039 -2585 2293 95 0 0 chrX 82270048 82270342 -80329588 + AluSc SINE Alu 3 296 -13 8947 234 31 14 chrX 82270342 82270932 -80328998 + L1MC2 LINE L1 4039 4617 -2007 1571 155 55 0 chrX 82270932 82271203 -80328727 + L1PB4 LINE L1 5869 6154 -2 8947 234 31 14 chrX 82271203 82272778 -80327152 + L1MC2 LINE L1 4617 6278 -346 708 230 62 5 chrX 82272785 82272994 -80326936 + L1MC2 LINE L1 6403 6623 -1 2057 99 3 3 chrX 82273505 82273825 -80326105 + AluSx SINE Alu 1 320 0 22 0 0 0 chrX 82274658 82274680 -80325250 + AT_rich Low_complexity Low_complexity 1 22 0 546 118 0 0 chrX 82274786 82274862 -80325068 - L1MA9 LINE L1 -380 5932 5857 387 124 38 222 chrX 82274850 82275035 -80324895 + L1MA7 LINE L1 6141 6291 0 * 398 155 78 19 chrX 82275610 82275713 -80324217 + L1M4 LINE L1 5137 5245 -901 411 245 68 73 chrX 82277514 82277706 -80322224 + MIR SINE MIR 28 218 -44 301 152 30 0 chrX 82278521 82278587 -80321343 + L1PB4 LINE L1 6081 6148 -8 623 221 0 8 chrX 82278832 82278963 -80320967 + FLAM_A SINE Alu 8 137 -5 1647 196 34 0 chrX 82279536 82279862 -80320068 - L1PB4 LINE L1 -38 6820 6484 258 98 33 16 chrX 82280151 82280212 -80319718 + (TA)n Simple_repeat Simple_repeat 1 62 0 201 167 0 0 chrX 82280243 82280279 -80319651 + (TA)n Simple_repeat Simple_repeat 2 37 0 7727 242 62 71 chrX 82280279 82281891 -80318039 - L1PB4 LINE L1 -364 6494 4869 1800 143 70 20 chrX 82281891 82282248 -80317682 - THE1C LTR MaLR 0 375 1 8835 140 41 28 chrX 82282248 82282338 -80317592 - THE1C-int LTR MaLR 0 1580 1493 2295 93 3 0 chrX 82282338 82282648 -80317282 - AluY SINE Alu 0 311 1 8835 140 41 28 chrX 82282648 82284117 -80315813 - THE1C-int LTR MaLR -87 1493 1 1587 140 106 34 chrX 82284117 82284467 -80315463 - THE1C LTR MaLR 0 375 1 7727 242 62 71 chrX 82284467 82284747 -80315183 - L1PB4 LINE L1 -1987 4871 4590 1225 207 0 52 chrX 82284747 82285049 -80314881 - AluJo SINE Alu 0 313 26 7727 242 62 71 chrX 82285049 82289395 -80310535 - L1PB4 LINE L1 -2268 4590 65 2259 172 24 7 chrX 82289888 82290307 -80309623 + MSTB LTR MaLR 1 426 0 8844 177 11 25 chrX 82290307 82291981 -80307949 + MSTB-int LTR MaLR 1 1651 0 2314 166 31 7 chrX 82291981 82292397 -80307533 + MSTB LTR MaLR 1 426 0 27 29 0 0 chrX 82292792 82292826 -80307104 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chrX 82293079 82293100 -80306830 + AT_rich Low_complexity Low_complexity 1 21 0 384 295 32 45 chrX 82293632 82293788 -80306142 + MER63A DNA MER1_type 45 198 -12 921 181 62 0 chrX 82294345 82294538 -80305392 - MER3 DNA MER1_type -3 206 2 829 263 9 31 chrX 82294936 82295160 -80304770 + MIR SINE MIR 44 262 0 205 143 0 0 chrX 82295582 82295617 -80304313 + L2 LINE L2 3279 3313 0 2014 204 21 50 chrX 82299963 82300173 -80299757 - MLT1D LTR MaLR -1 504 289 1110 160 11 0 chrX 82300173 82300361 -80299569 - L1PA16 LINE L1 -9 6157 5968 2014 204 21 50 chrX 82300361 82300635 -80299295 - MLT1D LTR MaLR -216 289 34 2072 124 0 3 chrX 82301294 82301585 -80298345 - AluSq SINE Alu -23 290 1 27 0 0 0 chrX 82302742 82302769 -80297161 + AT_rich Low_complexity Low_complexity 1 27 0 1728 43 0 0 chrX 82302769 82302980 -80296950 - L1PA3 LINE L1 -5 6150 5940 267 303 70 24 chrX 82303081 82303266 -80296664 + MIR SINE MIR 55 242 -20 587 280 11 59 chrX 82303729 82303915 -80296015 - MER5B DNA MER1_type -1 177 1 22 56 0 0 chrX 82304381 82304417 -80295513 + AT_rich Low_complexity Low_complexity 1 36 0 5186 127 47 0 chrX 82307675 82308501 -80291429 - L1PA15 LINE L1 -3 6162 5298 4185 219 55 40 chrX 82308503 82309839 -80290091 - L1M4 LINE L1 -366 5818 4418 14482 146 19 5 chrX 82309839 82312223 -80287707 - Tigger1 DNA MER2_type 0 2418 1 4185 219 55 40 chrX 82312223 82312805 -80287125 - L1M4 LINE L1 -1766 4418 3846 3063 177 7 28 chrX 82312838 82313510 -80286420 - L1MB1 LINE L1 -6 6162 5505 1764 154 7 122 chrX 82313513 82313954 -80285976 + L1P LINE L1 3623 4012 -2134 1746 201 41 5 chrX 82314158 82314640 -80285290 + L1PA16 LINE L1 5651 6163 -2 871 161 35 0 chrX 82314648 82314822 -80285108 - L1MB1 LINE L1 -644 5524 5345 231 103 0 0 chrX 82315467 82315506 -80284424 + (CA)n Simple_repeat Simple_repeat 2 40 0 256 351 81 0 chrX 82316053 82316127 -80283803 - L2 LINE L2 -38 3234 3155 440 251 69 20 chrX 82316556 82316759 -80283171 + L1MEd LINE L1 896 1108 -5011 8019 210 29 50 chrX 82316867 82318005 -80281925 - L1MA4A LINE L1 -178 6827 5666 2563 59 0 0 chrX 82318005 82318308 -80281622 - AluY SINE Alu -8 303 1 8019 210 29 50 chrX 82318308 82319945 -80279985 - L1MA4A LINE L1 -1339 5666 3996 2126 139 114 8 chrX 82319945 82320332 -80279598 + MSTA LTR MaLR 1 428 0 8019 210 29 50 chrX 82320332 82321187 -80278743 - L1MA4A LINE L1 -3009 3996 3124 1884 158 50 0 chrX 82321187 82321549 -80278381 - L1MA2 LINE L1 -3 6301 5922 8019 210 29 50 chrX 82321549 82323415 -80276515 - L1MA4A LINE L1 -3881 3124 1472 2855 39 3 6 chrX 82323438 82323795 -80276135 - L1PA8 LINE L1 -1 6171 5816 2339 86 0 0 chrX 82323795 82324108 -80275822 + L1PA8 LINE L1 5479 5791 -381 1338 247 7 14 chrX 82324109 82324401 -80275529 - L1MA4A LINE L1 -5384 1465 1176 613 182 0 0 chrX 82324403 82324502 -80275428 - L1MA4A LINE L1 -6748 101 3 26 0 0 0 chrX 82325058 82325084 -80274846 + AT_rich Low_complexity Low_complexity 1 26 0 2800 89 38 2 chrX 82325090 82325517 -80274413 - L1MA1 LINE L1 -3 6299 5858 1747 233 21 34 chrX 82325575 82325864 -80274066 + L1ME3A LINE L1 5691 5973 -197 2005 75 4 0 chrX 82325864 82326132 -80273798 - AluY SINE Alu -11 300 32 1747 233 21 34 chrX 82326132 82326318 -80273612 + L1ME3A LINE L1 5973 6160 -10 330 200 0 40 chrX 82326321 82326396 -80273534 + L1ME4a LINE L1 5962 6033 -88 5100 186 14 26 chrX 82326639 82328393 -80271537 - L1PA16 LINE L1 -9 6157 4426 790 250 24 19 chrX 82328723 82328931 -80270999 + MER63A DNA MER1_type 2 210 0 297 330 61 9 chrX 82330158 82330273 -80269657 - MIR SINE MIR -128 134 14 397 0 38 0 chrX 82330325 82330378 -80269552 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1181 227 17 30 chrX 82331054 82331349 -80268581 - L1PA16 LINE L1 -3 6163 5873 * 1623 202 14 9 chrX 82331348 82331957 -80267973 + L1 LINE L1 3759 4748 -1398 986 119 0 0 chrX 82332291 82332434 -80267496 + FLAM_C SINE Alu 1 143 0 598 283 80 14 chrX 82334397 82334609 -80265321 + MIR SINE MIR 4 229 -33 23 33 0 0 chrX 82335965 82335995 -80263935 + AT_rich Low_complexity Low_complexity 1 30 0 1011 124 0 0 chrX 82336325 82336470 -80263460 - L1M1 LINE L1 -634 5670 5526 23 33 0 0 chrX 82336483 82336513 -80263417 + AT_rich Low_complexity Low_complexity 1 30 0 207 281 93 43 chrX 82337357 82337496 -80262434 - L2 LINE L2 -10 3303 3158 2069 156 3 12 chrX 82337676 82338016 -80261914 + MER1B DNA MER1_type 1 337 0 989 262 32 4 chrX 82338216 82338468 -80261462 - MIR SINE MIR -1 261 3 1251 208 158 6 chrX 82338552 82338869 -80261061 - MLT1A1 LTR MaLR 0 365 1 6553 36 2 0 chrX 82339007 82339793 -80260137 - L1PA5 LINE L1 -8 6146 5356 25 31 0 0 chrX 82339996 82340028 -80259902 + AT_rich Low_complexity Low_complexity 1 32 0 2444 118 0 11 chrX 82340437 82340817 -80259113 - L1M2 LINE L1 -532 5768 5393 1966 135 10 0 chrX 82341021 82341317 -80258613 - AluSg SINE Alu -11 299 1 1566 257 65 86 chrX 82341334 82342233 -80257697 - L2 LINE L2 -1 3312 2435 3027 223 13 19 chrX 82342264 82342938 -80256992 + L1PA13 LINE L1 1294 1963 -4824 8581 72 8 0 chrX 82342963 82344058 -80255872 - HERVL-A1 LTR ERVL -4550 1104 1 401 66 115 0 chrX 82344058 82344119 -80255811 - MLT2A1 LTR ERVL 0 444 377 4745 189 7 42 chrX 82344121 82346088 -80253842 + L1MA1 LINE L1 4015 5905 -397 2785 123 15 11 chrX 82346088 82346553 -80253377 + L1MA1 LINE L1 5836 6302 0 5642 144 3 8 chrX 82346570 82347565 -80252365 + L1PA15 LINE L1 5175 6165 0 1300 271 278 2 chrX 82347601 82348122 -80251808 - L2 LINE L2 -965 2349 1685 2167 124 48 20 chrX 82349216 82349570 -80250360 + THE1B LTR MaLR 1 364 0 1997 130 16 10 chrX 82349751 82350058 -80249872 + AluSq SINE Alu 3 311 -2 4040 153 33 17 chrX 82350173 82350871 -80249059 - MER50 LTR ERV1 -23 711 3 2319 148 11 62 chrX 82352881 82352954 -80246976 - Tigger2a DNA MER2_type -2277 431 356 1512 201 17 7 chrX 82352954 82353253 -80246677 - AluJo SINE Alu -10 302 1 2319 148 11 62 chrX 82353253 82353633 -80246297 - Tigger2a DNA MER2_type -2352 356 1 239 336 23 39 chrX 82354106 82354234 -80245696 - L2 LINE L2 -12 3301 3176 479 173 45 0 chrX 82354243 82354353 -80245577 - L1PA15 LINE L1 -7 6158 6044 6448 110 17 26 chrX 82354650 82355776 -80244154 - L1MA4A LINE L1 -8 6295 5177 2310 89 0 3 chrX 82357641 82357944 -80241986 - AluY SINE Alu -9 302 1 6484 66 6 0 chrX 82358021 82358842 -80241088 - LTR12 LTR ERV1 0 826 1 1665 199 3 12 chrX 82359220 82359562 -80240368 - MER44D DNA MER2_type 0 609 1 207 160 40 0 chrX 82359694 82359744 -80240186 + (TA)n Simple_repeat Simple_repeat 2 53 0 280 340 50 0 chrX 82360142 82360242 -80239688 + L3 LINE CR1 1250 1354 -223 1276 94 0 0 chrX 82361798 82361979 -80237951 + L1P3 LINE L1 1 181 -6280 288 255 59 92 chrX 82362277 82362430 -80237500 - MIR SINE MIR -15 247 100 28 29 0 0 chrX 82362866 82362901 -80237029 + AT_rich Low_complexity Low_complexity 1 35 0 2054 120 0 0 chrX 82363061 82363380 -80236550 - AluSx SINE Alu 0 320 2 29 0 0 0 chrX 82363458 82363487 -80236443 + AT_rich Low_complexity Low_complexity 1 29 0 995 197 0 17 chrX 82363628 82363806 -80236124 - FAM SINE Alu 0 175 1 655 251 50 11 chrX 82364568 82364747 -80235183 + MER5A DNA MER1_type 1 186 -3 213 39 0 0 chrX 82364940 82364966 -80234964 + (A)n Simple_repeat Simple_repeat 1 26 0 231 143 250 0 chrX 82365123 82365179 -80234751 + L1PA13 LINE L1 34 103 -6684 22 35 0 0 chrX 82365911 82365940 -80233990 + AT_rich Low_complexity Low_complexity 1 29 0 545 328 20 36 chrX 82366078 82366331 -80233599 - L2 LINE L2 -49 3264 3016 2023 157 3 27 chrX 82366452 82366502 -80233428 - MER46B DNA MER2_type -2495 236 186 2167 154 103 10 chrX 82366502 82366892 -80233038 - MSTA LTR MaLR -2 426 1 8789 169 32 6 chrX 82366892 82368501 -80231429 - MSTA-int LTR MaLR 0 1651 1 2246 128 123 5 chrX 82368501 82368884 -80231046 - MSTA LTR MaLR 0 428 1 2023 157 3 27 chrX 82368884 82369201 -80230729 - MER46B DNA MER2_type -2542 189 1 733 159 79 114 chrX 82369266 82369493 -80230437 - MER20 DNA MER1_type 0 219 1 962 267 46 4 chrX 82369692 82369932 -80229998 - MIR SINE MIR -5 257 8 349 197 0 0 chrX 82370001 82370072 -80229858 - L1PB1 LINE L1 -9 6142 6072 689 191 16 53 chrX 82370097 82370285 -80229645 + MER53 DNA DNA 9 189 0 1706 224 42 9 chrX 82374453 82374885 -80225045 + L1MB8 LINE L1 5731 6176 -2 23 33 0 0 chrX 82375470 82375500 -80224430 + AT_rich Low_complexity Low_complexity 1 30 0 1872 64 0 40 chrX 82375773 82376083 -80223847 + AluY SINE Alu 42 341 0 389 276 20 0 chrX 82376184 82376282 -80223648 + MIR SINE MIR 50 149 -113 1201 179 15 0 chrX 82376306 82376507 -80223423 - Tigger3(Golem) DNA MER2_type -2825 204 1 204 135 0 0 chrX 82376520 82376557 -80223373 + (GA)n Simple_repeat Simple_repeat 2 38 0 246 203 17 17 chrX 82377299 82377358 -80222572 + GA-rich Low_complexity Low_complexity 3 61 0 306 262 0 39 chrX 82377983 82378086 -80221844 + L1MC4 LINE L1 6611 6709 -1333 * 308 229 60 0 chrX 82378008 82378091 -80221839 - L1MC3 LINE L1 -1139 6646 6559 282 147 59 29 chrX 82381386 82381488 -80218442 + (TA)n Simple_repeat Simple_repeat 2 106 0 22 0 0 0 chrX 82383059 82383081 -80216849 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 82383125 82383156 -80216774 + AT_rich Low_complexity Low_complexity 1 31 0 1706 148 74 0 chrX 82385363 82385646 -80214284 - AluSq SINE Alu -9 304 1 4760 52 13 48 chrX 82386032 82387101 -80212829 - MER11A LTR ERVK 0 1266 1 2053 147 0 6 chrX 82387546 82387858 -80212072 + AluSx SINE Alu 3 312 0 255 245 125 52 chrX 82388214 82388371 -80211559 + MIR SINE MIR 3 167 -81 23 0 0 0 chrX 82393903 82393926 -80206004 + AT_rich Low_complexity Low_complexity 1 23 0 182 318 80 34 chrX 82399374 82399462 -80200468 - L2 LINE L2 -228 3044 2953 1705 135 32 26 chrX 82399616 82399956 -80199974 + L1MA7 LINE L1 5950 6291 0 682 348 78 26 chrX 82400643 82401066 -80198864 + L2 LINE L2 2282 2726 -588 982 197 76 16 chrX 82401256 82401505 -80198425 - MER45B DNA AcHobo 0 1040 777 424 344 109 9 chrX 82401636 82401857 -80198073 + MIR SINE MIR 20 262 0 243 261 0 45 chrX 82401990 82402078 -80197852 + MIR SINE MIR 178 261 -1 2047 90 66 7 chrX 82402355 82402643 -80197287 + AluY SINE Alu 1 305 -6 22 0 0 0 chrX 82403953 82403975 -80195955 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 82404042 82404069 -80195861 + AT_rich Low_complexity Low_complexity 1 27 0 2399 51 10 0 chrX 82404207 82404501 -80195429 + AluY SINE Alu 1 297 -14 1179 117 0 0 chrX 82404501 82404681 -80195249 + (TA)n Simple_repeat Simple_repeat 1 180 0 364 289 114 15 chrX 82405500 82405701 -80194229 + L1ME LINE L1 5108 5328 -818 379 313 106 12 chrX 82405747 82406076 -80193854 + L1ME LINE L1 5395 5754 -367 6794 198 101 81 chrX 82406728 82409174 -80190756 - L1MCa LINE L1 -3909 2517 21 245 268 110 0 chrX 82409245 82409327 -80190603 - L1ME LINE L1 -295 5826 5736 2119 210 76 11 chrX 82409454 82410006 -80189924 - L1MB5 LINE L1 -36 6138 5551 * 4575 175 43 14 chrX 82410002 82411489 -80188441 - L1PB4 LINE L1 -2 6154 4639 250 132 0 0 chrX 82411501 82411539 -80188391 - L1PB4 LINE L1 -2363 3783 3746 2033 151 3 0 chrX 82411539 82411838 -80188092 - AluSq SINE Alu -13 300 1 7362 173 40 6 chrX 82411875 82412853 -80187077 - L1PB2 LINE L1 0 6151 5208 210 71 0 0 chrX 82412853 82412881 -80187049 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7362 173 40 6 chrX 82412881 82414377 -80185553 - L1PB2 LINE L1 -943 5208 3607 3618 244 45 44 chrX 82414383 82414956 -80184974 - L1MB5 LINE L1 -1172 4974 4403 2158 126 0 3 chrX 82414956 82415265 -80184665 + AluSx SINE Alu 1 308 -4 3618 244 45 44 chrX 82415265 82416009 -80183921 - L1MB5 LINE L1 -1743 4403 3656 872 285 4 49 chrX 82416010 82416288 -80183642 + L1MB5 LINE L1 2524 2754 -3392 1575 191 3 7 chrX 82416288 82416571 -80183359 + AluJo SINE Alu 9 290 -22 872 285 4 49 chrX 82416571 82416736 -80183194 + L1MB5 LINE L1 2754 2925 -3221 194 0 39 0 chrX 82416737 82416763 -80183167 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7377 38 0 0 chrX 82416763 82418414 -80181516 - L1PA5 LINE L1 -13 6141 4491 10509 175 50 49 chrX 82418414 82420547 -80179383 + L1MB5 LINE L1 2922 5051 -1123 2440 64 0 0 chrX 82420547 82420842 -80179088 - AluY SINE Alu -16 295 1 10509 175 50 49 chrX 82420842 82421860 -80178070 + L1MB5 LINE L1 5051 6066 -108 686 233 0 0 chrX 82421860 82421993 -80177937 - FRAM SINE Alu -18 158 26 10509 175 50 49 chrX 82421993 82422170 -80177760 + L1MB5 LINE L1 6066 5113 -1061 2198 153 8 18 chrX 82422170 82422562 -80177368 - MLT1B LTR MaLR -2 388 1 10509 175 50 49 chrX 82422562 82423420 -80176510 + L1MB5 LINE L1 5112 5968 -206 5521 203 35 26 chrX 82423420 82424605 -80175325 + ERVL-B2 LTR ERVL 644 1838 -3926 1603 26 0 0 chrX 82424608 82424854 -80175076 + L1PA2 LINE L1 5943 6188 0 21548 183 22 12 chrX 82424855 82428415 -80171515 + ERVL-B2 LTR ERVL 1832 5434 -330 342 0 0 0 chrX 82428415 82428453 -80171477 + (TG)n Simple_repeat Simple_repeat 2 39 0 21548 183 22 12 chrX 82428453 82428781 -80171149 + ERVL-B2 LTR ERVL 5434 5757 -7 512 136 0 23 chrX 82428781 82428869 -80171061 + MLT2B2 LTR ERVL 1 86 -429 1283 270 76 22 chrX 82428878 82429323 -80170607 + MER74B LTR ERVL 70 538 -84 241 241 51 13 chrX 82429265 82429344 -80170586 - MER88 LTR ERVL -303 161 80 * 683 234 0 0 chrX 82429401 82429538 -80170392 + MLT2B1 LTR ERVL 80 216 -304 2480 127 6 6 chrX 82429545 82429900 -80170030 + THE1B LTR MaLR 8 362 -2 938 221 146 36 chrX 82429900 82430180 -80169750 + MLT2B1 LTR ERVL 210 520 0 10863 218 24 11 chrX 82430483 82432399 -80167531 - L1M1 LINE L1 -5282 2283 331 2259 101 0 0 chrX 82432399 82432696 -80167234 - AluY SINE Alu -14 297 1 10863 218 24 11 chrX 82432696 82433018 -80166912 - L1M1 LINE L1 -7234 331 15 2848 119 2 0 chrX 82433062 82433465 -80166465 + MLT2A1 LTR ERVL 1 404 -40 482 114 29 92 chrX 82433655 82434403 -80165527 + (TA)n Simple_repeat Simple_repeat 1 701 0 390 91 0 0 chrX 82434404 82434459 -80165471 + MLT2A1 LTR ERVL 390 444 0 22061 90 14 5 chrX 82434460 82437432 -80162498 + HERVL-A1 LTR ERVL 2 3000 -2654 2119 145 30 0 chrX 82437432 82437798 -80162132 - L1PA15 LINE L1 -197 5968 5592 1467 191 13 7 chrX 82437794 82438097 -80161833 - L1PA15 LINE L1 -1280 4866 4562 * 7541 222 22 10 chrX 82438095 82439961 -80159969 - L1PA15 LINE L1 -2055 4091 2202 10878 190 34 19 chrX 82439998 82444171 -80155759 - L1PB1 LINE L1 0 7570 3462 189 0 0 0 chrX 82444171 82444192 -80155738 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 10878 190 34 19 chrX 82444192 82445101 -80154829 - L1PB1 LINE L1 -4108 3462 2568 594 0 0 0 chrX 82445101 82445167 -80154763 + (TA)n Simple_repeat Simple_repeat 2 67 0 10878 190 34 19 chrX 82445167 82446208 -80153722 - L1PB1 LINE L1 -5002 2568 1375 3016 34 0 0 chrX 82446226 82446584 -80153346 - L1PA3 LINE L1 -8 6147 5790 2908 15 0 0 chrX 82446584 82446912 -80153018 + L1PA3 LINE L1 5502 5829 -326 1280 207 12 16 chrX 82446890 82447136 -80152794 - L1PB1 LINE L1 -6151 1414 1170 * 5147 131 22 9 chrX 82447137 82448009 -80151921 + L1MA2 LINE L1 5422 6304 0 430 248 31 31 chrX 82448039 82448168 -80151762 + L2 LINE L2 3185 3313 0 1640 183 60 4 chrX 82448416 82448839 -80151091 + L1MC1 LINE L1 5746 6281 -52 468 75 12 0 chrX 82448841 82448921 -80151009 - AluSc SINE Alu -2 307 227 443 107 13 0 chrX 82450627 82450702 -80149228 + (TA)n Simple_repeat Simple_repeat 2 77 0 30 0 0 0 chrX 82452207 82452237 -80147693 + AT_rich Low_complexity Low_complexity 1 30 0 343 227 196 18 chrX 82453254 82453474 -80146456 + HAL1b LINE L1 90 348 -1000 202 238 0 16 chrX 82453628 82453691 -80146239 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 741 262 99 21 chrX 82453701 82454136 -80145794 + HAL1b LINE L1 735 1203 -145 305 276 118 47 chrX 82454144 82454314 -80145616 + HAL1b LINE L1 1161 1342 -6 286 324 35 35 chrX 82454495 82454640 -80145290 - L3 LINE CR1 -63 1514 1370 628 225 8 8 chrX 82454642 82454771 -80145159 - MLT1B LTR MaLR -46 344 216 610 147 37 0 chrX 82454772 82454881 -80145049 - L1M2 LINE L1 -549 5751 5639 236 146 24 24 chrX 82454884 82454966 -80144964 + (TA)n Simple_repeat Simple_repeat 2 83 0 3569 151 40 6 chrX 82455057 82455708 -80144222 - L1PA15 LINE L1 -212 5953 5281 1839 203 47 0 chrX 82455868 82456276 -80143654 - L1PA15 LINE L1 -855 5291 4865 * 7107 50 3 6 chrX 82456263 82457165 -80142765 - L1PA7 LINE L1 -1 6153 5254 5154 98 0 27 chrX 82457177 82457963 -80141967 - L1P LINE L1 -743 5403 4639 13013 109 3 2 chrX 82457967 82459874 -80140056 + L1P3 LINE L1 3 1893 -4558 3262 78 2 2 chrX 82459876 82460325 -80139605 - L1P LINE L1 -1506 4640 4192 15678 87 6 1 chrX 82460326 82462542 -80137388 - L1P LINE L1 -1447 4699 2472 6765 78 16 16 chrX 82462542 82463416 -80136514 - HERVL-A1 LTR ERVL -4740 914 38 2876 6 0 0 chrX 82463416 82463727 -80136203 + AluY SINE Alu 1 311 0 6765 78 16 16 chrX 82463727 82463766 -80136164 - HERVL-A1 LTR ERVL -5615 39 1 2792 88 44 32 chrX 82463767 82463830 -80136100 - MLT2A1 LTR ERVL -1 443 382 243 0 0 0 chrX 82463830 82463857 -80136073 + (CA)n Simple_repeat Simple_repeat 2 28 0 2792 88 44 32 chrX 82463857 82464227 -80135703 - MLT2A1 LTR ERVL -62 382 5 4916 167 30 17 chrX 82464235 82464511 -80135419 + L1PA15 LINE L1 5049 5320 -845 1960 211 38 19 chrX 82464511 82464929 -80135001 + MSTB LTR MaLR 1 426 0 4916 167 30 17 chrX 82464929 82465724 -80134206 + L1PA15 LINE L1 5320 6137 -28 355 308 0 41 chrX 82465720 82465866 -80134064 + L1ME1 LINE L1 5965 6104 -62 * 24 53 0 0 chrX 82465890 82465928 -80134002 + AT_rich Low_complexity Low_complexity 1 38 0 273 320 93 0 chrX 82466107 82466204 -80133726 + MIR SINE MIR 85 190 -72 2373 211 49 15 chrX 82466504 82467036 -80132894 + L1MCb LINE L1 1 550 -5495 2475 244 33 56 chrX 82467127 82468417 -80131513 + L1MCb LINE L1 570 1799 -4765 843 282 49 3 chrX 82468423 82468770 -80131160 + L1MCb LINE L1 2820 3182 -3382 1616 244 18 8 chrX 82468794 82469184 -80130746 - MSTD LTR MaLR -2 394 1 5867 257 59 42 chrX 82469184 82469408 -80130522 - MSTD-int LTR MaLR 0 1735 1516 5311 114 5 2 chrX 82469408 82470218 -80129712 + L1MA2 LINE L1 5489 6300 -4 5867 257 59 42 chrX 82470218 82471698 -80128232 - MSTD-int LTR MaLR -219 1516 3 1123 214 60 38 chrX 82471703 82471970 -80127960 - MSTD LTR MaLR -2 394 122 1505 248 93 58 chrX 82471995 82472952 -80126978 - L1M3c LINE L1 -4650 2387 238 8623 220 42 9 chrX 82472953 82473071 -80126859 - L1M1 LINE L1 -5669 1896 1783 216 0 0 0 chrX 82473071 82473095 -80126835 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 210 37 0 0 chrX 82473105 82473132 -80126798 + (TC)n Simple_repeat Simple_repeat 2 28 0 8623 220 42 9 chrX 82473132 82474816 -80125114 - L1M1 LINE L1 -5790 1775 22 607 242 0 0 chrX 82475362 82475486 -80124444 + MER4D LTR ERV1 606 729 -174 428 240 29 0 chrX 82475487 82475591 -80124339 - L1 LINE L1 -1170 6395 6289 372 200 0 0 chrX 82475640 82475705 -80124225 - L1 LINE L1 -5826 1739 1675 883 149 0 0 chrX 82475718 82475852 -80124078 + MER4D LTR ERV1 742 875 -28 405 0 0 0 chrX 82476128 82476173 -80123757 + (TG)n Simple_repeat Simple_repeat 1 45 0 773 299 128 22 chrX 82476296 82476664 -80123266 + LTR16A LTR ERVL 32 438 -12 22 0 0 0 chrX 82476845 82476867 -80123063 + AT_rich Low_complexity Low_complexity 1 22 0 655 350 36 21 chrX 82477115 82477444 -80122486 - L2 LINE L2 -586 2728 2395 255 175 0 0 chrX 82478528 82478585 -80121345 + GA-rich Low_complexity Low_complexity 4 60 0 4453 225 9 5 chrX 82479146 82479990 -80119940 + MER54A LTR ERVL 1 848 -53 960 139 7 0 chrX 82479988 82480139 -80119791 + THE1C LTR MaLR 224 375 0 * 21 36 0 0 chrX 82480364 82480392 -80119538 + AT_rich Low_complexity Low_complexity 1 28 0 538 268 72 5 chrX 82481142 82481351 -80118579 - Tigger8 DNA MER2_type -273 393 171 324 233 23 62 chrX 82481624 82481753 -80118177 - MER103 DNA DNA -2 164 41 2300 74 0 10 chrX 82481792 82482091 -80117839 - AluY SINE Alu -15 296 1 631 307 104 18 chrX 82482272 82482656 -80117274 + MLT1L LTR MaLR 199 615 0 180 0 0 0 chrX 82483175 82483195 -80116735 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2104 130 0 10 chrX 82483200 82483508 -80116422 + AluSx SINE Alu 1 305 -7 2557 109 39 0 chrX 82484022 82484436 -80115494 + L1MA5A LINE L1 5862 6291 -6 396 191 59 4 chrX 82484573 82484707 -80115223 + Tigger5 DNA MER2_type 1 194 -2129 270 254 0 0 chrX 82484704 82484771 -80115159 + Tigger5 DNA MER2_type 2244 2310 -13 * 474 181 0 19 chrX 82484791 82484896 -80115034 + L1PA16 LINE L1 6064 6166 0 1337 245 72 50 chrX 82484983 82485126 -80114804 + L1MC4a LINE L1 5254 5392 -2416 2416 92 0 0 chrX 82485126 82485431 -80114499 + AluY SINE Alu 1 305 -6 1337 245 72 50 chrX 82485431 82485949 -80113981 + L1MC4a LINE L1 5392 5930 -1878 2300 249 86 0 chrX 82486940 82487542 -80112388 - MLT1E1 LTR MaLR 0 654 1 1813 176 0 0 chrX 82487717 82488006 -80111924 - AluSx SINE Alu -17 295 7 902 159 24 24 chrX 82489454 82489661 -80110269 - L1MA3 LINE L1 0 6305 6099 21 57 0 0 chrX 82490222 82490257 -80109673 + AT_rich Low_complexity Low_complexity 1 35 0 556 76 0 13 chrX 82490769 82490848 -80109082 - MADE1 DNA Mariner -2 78 1 946 227 59 0 chrX 82491522 82491725 -80108205 + MER58A DNA MER1_type 10 224 0 1723 160 27 24 chrX 82491752 82492090 -80107840 + L1MA7 LINE L1 5835 6173 -118 1961 141 27 35 chrX 82492092 82492462 -80107468 + THE1C LTR MaLR 4 370 -5 497 93 0 173 chrX 82492467 82492617 -80107313 + L1MA7 LINE L1 6168 6291 0 550 192 0 0 chrX 82493509 82493608 -80106322 - L1PA15 LINE L1 -181 6635 6537 12379 242 59 26 chrX 82493618 82497029 -80102901 - L1PA15 LINE L1 -543 6274 2303 423 0 0 0 chrX 82497029 82497076 -80102854 + (TG)n Simple_repeat Simple_repeat 2 48 0 12379 242 59 26 chrX 82497076 82499457 -80100473 - L1PA15 LINE L1 -4514 2303 1 273 273 193 0 chrX 82500061 82500149 -80099781 + MIR3 SINE MIR 50 154 -54 201 296 0 34 chrX 82500151 82500239 -80099691 + T-rich Low_complexity Low_complexity 1 85 0 24 0 0 0 chrX 82500293 82500317 -80099613 + AT_rich Low_complexity Low_complexity 1 24 0 1642 148 7 27 chrX 82500373 82500670 -80099260 - L1MA7 LINE L1 -43 6248 5958 22 34 0 68 chrX 82500971 82501030 -80098900 + AT_rich Low_complexity Low_complexity 1 55 0 2295 36 0 0 chrX 82501932 82502207 -80097723 + L1PA3 LINE L1 5878 6152 -3 23 0 0 0 chrX 82502213 82502236 -80097694 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chrX 82502337 82502389 -80097541 + AT_rich Low_complexity Low_complexity 1 52 0 185 257 184 44 chrX 82502827 82502963 -80096967 - L2 LINE L2 -1074 2240 2086 255 226 75 54 chrX 82502999 82503092 -80096838 + L2 LINE L2 3219 3313 0 3067 181 55 1 chrX 82504439 82505106 -80094824 + L1MCa LINE L1 922 1624 -4802 315 345 204 18 chrX 82505345 82505942 -80093988 + L2 LINE L2 2050 2757 -557 223 317 17 0 chrX 82506389 82506449 -80093481 - L2 LINE L2 -220 3052 2992 215 343 129 0 chrX 82506434 82506574 -80093356 + L3 LINE CR1 1146 1303 -274 * 274 302 12 0 chrX 82506580 82506666 -80093264 - L2 LINE L2 -961 2353 2267 186 182 114 0 chrX 82506700 82506744 -80093186 - L2 LINE L2 -2 3311 3263 * 494 239 118 0 chrX 82506716 82506894 -80093036 - MIR SINE MIR -17 245 47 922 215 5 28 chrX 82506923 82507137 -80092793 + MER3 DNA MER1_type 1 209 0 374 314 38 44 chrX 82508538 82508697 -80091233 + MIR3 SINE MIR 30 187 -21 23 0 0 0 chrX 82509647 82509670 -80090260 + AT_rich Low_complexity Low_complexity 1 23 0 2370 117 117 5 chrX 82509888 82510273 -80089657 - MSTA LTR MaLR 0 428 1 198 0 0 0 chrX 82510476 82510498 -80089432 + (A)n Simple_repeat Simple_repeat 1 22 0 422 35 0 18 chrX 82510522 82510579 -80089351 + (GA)n Simple_repeat Simple_repeat 2 57 0 291 258 197 8 chrX 82510961 82511093 -80088837 + MLT1K LTR MaLR 428 584 -4 21 0 0 0 chrX 82511554 82511575 -80088355 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chrX 82511681 82511704 -80088226 + (A)n Simple_repeat Simple_repeat 1 23 0 1387 278 94 35 chrX 82512402 82513394 -80086536 + L1M4 LINE L1 2900 3949 -2197 642 218 69 19 chrX 82513535 82513751 -80086179 + L1M4 LINE L1 4140 4366 -1780 4110 90 0 0 chrX 82513789 82514343 -80085587 - MER41A LTR ERV1 0 554 1 1699 86 9 0 chrX 82514343 82514563 -80085367 - MER41A-int LTR ERV1 -2 5944 5723 548 262 23 6 chrX 82514563 82514735 -80085195 + L1ME LINE L1 4171 4345 -1801 453 224 58 29 chrX 82514750 82514924 -80085006 + L1ME LINE L1 4497 4675 -1471 493 276 116 32 chrX 82514955 82515123 -80084807 + L1ME LINE L1 4733 4885 -1277 3574 208 9 22 chrX 82515123 82515980 -80083950 + L1MA10 LINE L1 5487 6332 -2 493 276 116 32 chrX 82515980 82516487 -80083443 + L1ME LINE L1 4885 5480 -682 1093 154 29 0 chrX 82516545 82516753 -80083177 - L1MA5 LINE L1 -2 6298 6085 1382 174 4 0 chrX 82516753 82517017 -80082913 - L1PA14 LINE L1 -1008 5789 5525 6288 97 12 0 chrX 82517018 82518025 -80081905 + L1PA14 LINE L1 5792 6809 -3 5193 173 25 7 chrX 82518036 82519900 -80080030 - L1MA5 LINE L1 -203 6097 4203 11068 228 39 18 chrX 82519988 82522889 -80077041 - L1PA13 LINE L1 -3080 3717 724 405 39 0 0 chrX 82522889 82522940 -80076990 + (CA)n Simple_repeat Simple_repeat 2 52 0 11068 228 39 18 chrX 82522940 82523680 -80076250 - L1PA13 LINE L1 -6073 724 1 316 310 39 20 chrX 82523849 82524052 -80075878 - L1MEd LINE L1 -4974 1145 939 207 114 0 0 chrX 82524486 82524521 -80075409 + (CA)n Simple_repeat Simple_repeat 2 36 0 925 241 61 82 chrX 82524529 82524906 -80075024 - MLT1B LTR MaLR -11 379 11 2702 314 15 34 chrX 82525450 82526372 -80073558 + L1PA15 LINE L1 2 906 -5881 9752 244 112 14 chrX 82526385 82527004 -80072926 + L1PA15 LINE L1 1242 1799 -5017 2954 92 5 22 chrX 82527004 82527450 -80072480 + L1PA7 LINE L1 5717 6154 0 9752 244 112 14 chrX 82527450 82528160 -80071770 + L1PA15 LINE L1 1799 2439 -4377 2113 127 0 10 chrX 82528160 82528467 -80071463 + AluSq SINE Alu 1 304 -9 9752 244 112 14 chrX 82528467 82532038 -80067892 + L1PA15 LINE L1 2439 6645 -171 42158 37 21 1 chrX 82532043 82538063 -80061867 + L1PA2 LINE L1 8 6152 -3 873 222 0 0 chrX 82538065 82538241 -80061689 + L1PA15 LINE L1 6633 6808 -8 30 0 0 0 chrX 82538272 82538302 -80061628 + AT_rich Low_complexity Low_complexity 1 30 0 645 204 0 28 chrX 82538766 82538908 -80061022 - FLAM_C SINE Alu -1 142 5 33 56 0 0 chrX 82539056 82539110 -80060820 + AT_rich Low_complexity Low_complexity 1 54 0 228 170 0 0 chrX 82540074 82540127 -80059803 + T-rich Low_complexity Low_complexity 1 53 0 4595 244 55 10 chrX 82540267 82542195 -80057735 + L1MA9 LINE L1 2144 4223 -1923 246 62 0 0 chrX 82542199 82542231 -80057699 + (TG)n Simple_repeat Simple_repeat 2 33 0 270 214 34 0 chrX 82542317 82542406 -80057524 + (TA)n Simple_repeat Simple_repeat 2 93 0 204 197 70 0 chrX 82542445 82542516 -80057414 + (TA)n Simple_repeat Simple_repeat 1 76 0 * 326 236 28 50 chrX 82542466 82542648 -80057282 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 426 217 72 0 chrX 82542540 82542706 -80057224 + (TA)n Simple_repeat Simple_repeat 2 179 0 311 270 11 11 chrX 82542714 82542803 -80057127 - L1MC4 LINE L1 -1340 6702 6614 * 312 229 0 62 chrX 82542724 82542820 -80057110 + L1MC4 LINE L1 6615 6704 -1338 225 108 0 0 chrX 82542840 82542877 -80057053 + (CA)n Simple_repeat Simple_repeat 2 38 0 1104 220 18 21 chrX 82542878 82543205 -80056725 + L1MA9 LINE L1 4239 4564 -1582 952 222 15 11 chrX 82543205 82543528 -80056402 - MSTD LTR MaLR -3 393 1 344 250 9 28 chrX 82543529 82543637 -80056293 + L1MA9 LINE L1 4565 4670 -1476 * 3391 218 18 1 chrX 82543630 82544287 -80055643 - MST-int LTR MaLR -576 1075 408 2590 77 122 5 chrX 82544295 82544696 -80055234 + LTR7 LTR ERV1 1 448 -2 19382 102 37 12 chrX 82544698 82547612 -80052318 + HERVH LTR ERV1 1 2987 -4726 880 149 20 0 chrX 82547606 82547754 -80052176 + HERVH LTR ERV1 3140 3290 -4423 * 3349 114 0 10 chrX 82547744 82548251 -80051679 + HERVH LTR ERV1 3492 3993 -3720 4226 138 22 1 chrX 82548257 82548903 -80051027 + HERVH LTR ERV1 4491 5149 -2564 1336 148 19 0 chrX 82548904 82549120 -80050810 + HERVH LTR ERV1 5600 5819 -1894 2240 91 50 0 chrX 82549120 82549461 -80050469 + HERVH LTR ERV1 7324 7681 -32 2179 195 10 3 chrX 82549461 82549498 -80050432 - MSTB-int LTR MaLR -1227 508 473 2534 85 122 5 chrX 82549498 82549899 -80050031 + LTR7 LTR ERV1 1 448 -2 2179 195 10 3 chrX 82549899 82550306 -80049624 - MSTB-int LTR MaLR -1262 473 1 2106 217 19 5 chrX 82550306 82550726 -80049204 - MSTB LTR MaLR 0 426 1 2654 205 24 10 chrX 82550726 82551005 -80048925 + L1MA9 LINE L1 4830 5103 -1209 4049 136 3 2 chrX 82551005 82551639 -80048291 + MER41B LTR ERV1 1 635 0 2654 205 24 10 chrX 82551639 82552349 -80047581 + L1MA9 LINE L1 5103 5828 -484 1946 245 114 58 chrX 82552383 82553310 -80046620 - L1MEc LINE L1 -1704 4511 3492 1865 121 0 4 chrX 82553310 82553566 -80046364 - AluSq SINE Alu -56 257 3 1946 245 114 58 chrX 82553566 82553910 -80046020 - L1MEc LINE L1 -2723 3492 3169 1277 304 43 30 chrX 82554024 82554906 -80045024 - L1MEc LINE L1 -4493 1903 1010 1069 307 43 25 chrX 82554953 82555555 -80044375 - L1MEc LINE L1 -5667 729 31 11233 205 35 18 chrX 82555609 82557908 -80042022 + L1M1 LINE L1 13 2350 -5215 660 113 165 0 chrX 82557914 82558049 -80041881 - AluSc SINE Alu 0 327 174 3334 111 16 61 chrX 82558055 82558675 -80041255 + L1M1 LINE L1 2355 2946 -4619 * 4453 160 60 34 chrX 82558668 82559246 -80040684 - L1M1 LINE L1 -4234 3331 2713 324 0 0 0 chrX 82559246 82559282 -80040648 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4453 160 60 34 chrX 82559282 82559717 -80040213 - L1M1 LINE L1 -4852 2713 2291 3278 224 51 4 chrX 82559717 82560163 -80039767 - L1M1 LINE L1 -6225 1340 847 210 37 0 0 chrX 82560163 82560190 -80039740 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3278 224 51 4 chrX 82560190 82560449 -80039481 - L1M1 LINE L1 -6718 847 602 11901 212 26 7 chrX 82560455 82561008 -80038922 + L1MA2 LINE L1 2404 2945 -3201 1560 206 89 35 chrX 82561008 82561411 -80038519 - MSTA LTR MaLR -3 425 1 11901 212 26 7 chrX 82561411 82562366 -80037564 + L1MA2 LINE L1 2945 3880 -2266 207 0 0 0 chrX 82562366 82562389 -80037541 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 11901 212 26 7 chrX 82562389 82563711 -80036219 + L1MA2 LINE L1 3880 5289 -857 2526 130 43 2 chrX 82563710 82564133 -80035797 + L1MA2 LINE L1 5525 5964 -340 * 958 138 19 0 chrX 82564102 82564261 -80035669 - L1MA1 LINE L1 -67 6235 6074 * 1514 157 48 7 chrX 82564235 82564529 -80035401 + L1MA1 LINE L1 5917 6222 -80 1311 129 34 0 chrX 82564529 82564760 -80035170 + L1MA2 LINE L1 6064 6304 0 2021 126 0 7 chrX 82566817 82567137 -80032793 + AluSc SINE Alu 1 309 0 462 277 80 41 chrX 82567137 82567733 -80032197 + L1ME LINE L1 673 1164 -5053 1949 152 58 22 chrX 82567875 82568236 -80031694 - THE1C LTR MaLR -1 374 1 9637 126 32 36 chrX 82568236 82569822 -80030108 - THE1C-int LTR MaLR 0 1580 1 2391 138 14 0 chrX 82569822 82570192 -80029738 - THE1C LTR MaLR 0 375 1 334 86 0 5 chrX 82570214 82570268 -80029662 - THE1C LTR MaLR -312 52 1 21 89 0 0 chrX 82570294 82570350 -80029580 + AT_rich Low_complexity Low_complexity 1 56 0 572 335 10 7 chrX 82570350 82570646 -80029284 + L1ME LINE L1 1520 1816 -4580 1514 273 39 17 chrX 82570681 82571326 -80028604 + L1M4 LINE L1 4261 4919 -1227 1004 317 73 54 chrX 82571325 82571959 -80027971 + L1MA4 LINE L1 62 707 -6142 * 11776 230 53 15 chrX 82572265 82575095 -80024835 + L1MA4 LINE L1 1332 4053 -2949 6043 83 39 0 chrX 82575095 82575889 -80024041 - LTR12 LTR ERV1 0 826 2 11776 230 53 15 chrX 82575889 82578819 -80021111 + L1MA4 LINE L1 4053 6995 -7 945 230 32 29 chrX 82578859 82579237 -80020693 + L1ME LINE L1 3164 3542 -2673 923 362 22 37 chrX 82579244 82579865 -80020065 + L1PA16 LINE L1 788 1399 -6175 260 316 10 20 chrX 82579985 82580083 -80019847 + L1PA16 LINE L1 2086 2182 -5399 8403 257 27 24 chrX 82580331 82583069 -80016861 + L1PA16 LINE L1 2182 4953 -2631 287 25 25 0 chrX 82583069 82583109 -80016821 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8403 257 27 24 chrX 82583109 82583907 -80016023 + L1PA16 LINE L1 4953 5748 -1836 4747 161 20 12 chrX 82584083 82585091 -80014839 + L1PA16 LINE L1 6586 7600 -4 4858 224 64 5 chrX 82585106 82585815 -80014115 + L1ME LINE L1 3541 4207 -2008 225 24 71 0 chrX 82585815 82585857 -80014073 + (TA)n Simple_repeat Simple_repeat 1 45 0 4858 224 64 5 chrX 82585857 82586624 -80013306 + L1ME LINE L1 4207 5162 -1053 1956 157 30 19 chrX 82586633 82587002 -80012928 - L1PB4 LINE L1 -2 6154 5782 273 109 0 0 chrX 82587016 82587062 -80012868 + (TC)n Simple_repeat Simple_repeat 1 46 0 767 20 87 0 chrX 82587062 82587212 -80012718 + (TA)n Simple_repeat Simple_repeat 2 164 0 900 7 36 54 chrX 82587247 82587558 -80012372 + (TA)n Simple_repeat Simple_repeat 1 305 0 2119 191 63 16 chrX 82587567 82588123 -80011807 - L1PB4 LINE L1 -374 5782 5206 3394 224 19 14 chrX 82588123 82588964 -80010966 + L1MA6 LINE L1 5455 6299 -1 279 243 36 9 chrX 82589062 82589173 -80010757 + L1M4 LINE L1 4982 5095 -1051 2046 143 26 34 chrX 82589173 82589551 -80010379 - THE1C LTR MaLR 0 375 1 1282 91 5 5 chrX 82589551 82589737 -80010193 - THE1C-int LTR MaLR 0 1580 1395 929 153 28 37 chrX 82589757 82589938 -80009992 + THE1C LTR MaLR 208 375 0 1377 241 40 14 chrX 82589951 82590304 -80009626 - MLT1A1 LTR MaLR -3 362 1 782 228 132 5 chrX 82590308 82590527 -80009403 + L1ME1 LINE L1 5915 6161 -5 27 81 0 0 chrX 82590680 82590742 -80009188 + AT_rich Low_complexity Low_complexity 1 62 0 1290 326 10 23 chrX 82590895 82591416 -80008514 + L1M3b LINE L1 1 514 -5767 3505 279 56 21 chrX 82591443 82592970 -80006960 + L1M3b LINE L1 685 2264 -4086 776 242 4 61 chrX 82593076 82593262 -80006668 - L1M4 LINE L1 -1909 4237 4065 2181 125 0 22 chrX 82593262 82593574 -80006356 - AluSx SINE Alu -7 305 1 776 242 4 61 chrX 82593574 82593618 -80006312 - L1M4 LINE L1 -2081 4065 4020 5303 206 29 20 chrX 82593632 82595033 -80004897 - L1PA15 LINE L1 -13 6152 4764 198 0 0 0 chrX 82595033 82595055 -80004875 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 9366 83 30 20 chrX 82595056 82596412 -80003518 - SVA Other Other 0 1386 17 5303 206 29 20 chrX 82596412 82597391 -80002539 - L1PA15 LINE L1 -1401 4764 3748 1780 178 10 0 chrX 82597391 82597695 -80002235 - AluSx SINE Alu -5 307 1 5303 206 29 20 chrX 82597695 82598022 -80001908 - L1PA15 LINE L1 -2417 3748 3425 22 35 0 0 chrX 82598044 82598073 -80001857 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrX 82598227 82598257 -80001673 + AT_rich Low_complexity Low_complexity 1 30 0 301 58 39 0 chrX 82598475 82598527 -80001403 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chrX 82598818 82598846 -80001084 + AT_rich Low_complexity Low_complexity 1 28 0 400 269 57 53 chrX 82600027 82600254 -79999676 + L1MC/D LINE L1 5254 5481 -2327 2141 150 62 17 chrX 82600384 82600843 -79999087 - L1MA9 LINE L1 -572 5719 5241 * 2307 186 40 48 chrX 82600842 82601467 -79998463 + L1MA9 LINE L1 5691 6310 -2 823 258 26 30 chrX 82601549 82601816 -79998114 - LTR16C LTR ERVL -2 489 224 246 271 0 0 chrX 82601837 82601896 -79998034 - LTR16C LTR ERVL -388 103 45 325 339 9 26 chrX 82602309 82602424 -79997506 + MIR SINE MIR 3 115 -147 923 252 0 9 chrX 82602639 82602865 -79997065 - MER58A DNA MER1_type 0 224 1 471 284 54 14 chrX 82603799 82603947 -79995983 + MER5A DNA MER1_type 36 189 0 791 344 28 13 chrX 82604469 82604867 -79995063 - MLT1K LTR MaLR -77 511 108 770 293 48 12 chrX 82604883 82605132 -79994798 - MIR SINE MIR 0 262 5 2375 146 6 6 chrX 82606991 82607355 -79992575 + THE1B LTR MaLR 1 364 0 5380 164 47 38 chrX 82607355 82608583 -79991347 + THE1B-int LTR MaLR 1 1240 -340 21 0 0 0 chrX 82611033 82611054 -79988876 + AT_rich Low_complexity Low_complexity 1 21 0 7838 106 19 3 chrX 82613148 82614352 -79985578 + L1P3 LINE L1 338 1560 -4901 4385 178 21 18 chrX 82616121 82617496 -79982434 - L1M1 LINE L1 -639 5666 4291 9562 108 15 20 chrX 82617601 82619273 -79980657 + HERVH LTR ERV1 516 2264 -5449 22 35 0 0 chrX 82620878 82620907 -79979023 + GC_rich Low_complexity Low_complexity 1 29 0 3770 158 23 5 chrX 82621556 82622383 -79977547 - L1PA16 LINE L1 -186 5980 5148 2503 248 6 12 chrX 82622559 82623284 -79976646 - L1M1 LINE L1 -1836 4310 3591 216 170 0 0 chrX 82623406 82623459 -79976471 + A-rich Low_complexity Low_complexity 2 54 0 217 247 14 0 chrX 82623470 82623543 -79976387 + A-rich Low_complexity Low_complexity 5 78 0 22 0 0 0 chrX 82624811 82624833 -79975097 + AT_rich Low_complexity Low_complexity 1 22 0 1298 225 7 0 chrX 82626002 82626291 -79973639 + L1PA16 LINE L1 5875 6165 -1 8489 187 41 3 chrX 82626712 82628335 -79971595 + L1M4 LINE L1 641 2325 -5240 2393 170 33 0 chrX 82628326 82628756 -79971174 + L1P3 LINE L1 8 451 -6010 * 12139 130 96 3 chrX 82629126 82631401 -79968529 + L1P3 LINE L1 1604 4088 -2373 2543 89 0 3 chrX 82631536 82631884 -79968046 + L1PA6 LINE L1 5803 6149 -5 1368 234 31 60 chrX 82631885 82632530 -79967400 + L1M4 LINE L1 5931 6556 -1009 26512 103 30 93 chrX 82632534 82638686 -79961244 + L1P2 LINE L1 1 5757 -397 1651 130 7 0 chrX 82638786 82639078 -79960852 - L1P LINE L1 -1194 4952 4659 1521 249 25 46 chrX 82639076 82639700 -79960230 - L1P3 LINE L1 -5148 727 3 * 2218 65 9 86 chrX 82639711 82640047 -79959883 - AluY SINE Alu -1 310 1 416 391 4 4 chrX 82640363 82640642 -79959288 - L1MEc LINE L1 -6083 313 35 216 397 63 11 chrX 82641525 82641699 -79958231 - MER5A DNA MER1_type 0 189 7 27 81 0 0 chrX 82642161 82642223 -79957707 + AT_rich Low_complexity Low_complexity 1 62 0 25 51 0 0 chrX 82642332 82642371 -79957559 + AT_rich Low_complexity Low_complexity 1 39 0 297 75 0 0 chrX 82642441 82642481 -79957449 + (TA)n Simple_repeat Simple_repeat 2 41 0 244 171 0 29 chrX 82642886 82642956 -79956974 + (TA)n Simple_repeat Simple_repeat 1 68 0 313 279 47 0 chrX 82642967 82643053 -79956877 + L1MC4 LINE L1 6614 6703 -1339 228 351 53 8 chrX 82643252 82643383 -79956547 + L2 LINE L2 3113 3249 -23 1514 221 61 11 chrX 82644420 82644795 -79955135 - MSTD LTR MaLR -2 394 1 6115 183 17 11 chrX 82644853 82646640 -79953290 - L1PA15 LINE L1 -3 6162 4353 4658 37 2 5 chrX 82646640 82647209 -79952721 - L1PA5 LINE L1 0 6154 5588 6115 183 17 11 chrX 82647209 82647602 -79952328 - L1PA15 LINE L1 -1812 4353 3964 29017 33 0 1 chrX 82647702 82651308 -79948622 - L1PA5 LINE L1 -690 5465 1861 1847 128 4 4 chrX 82651409 82651682 -79948248 + THE1B LTR MaLR 92 364 0 27 29 0 0 chrX 82652061 82652095 -79947835 + AT_rich Low_complexity Low_complexity 1 34 0 1387 257 33 40 chrX 82652123 82652551 -79947379 + L1M4 LINE L1 1 425 -6117 6384 140 14 5 chrX 82652685 82653928 -79946002 - L1MA2 LINE L1 -9 6295 5040 2652 178 27 9 chrX 82653917 82654480 -79945450 - L1MA2 LINE L1 -1336 4810 4238 * 2052 299 58 69 chrX 82654511 82655423 -79944507 - L1PA13 LINE L1 -5885 902 1 967 182 51 0 chrX 82655452 82655628 -79944302 - L1MC/D LINE L1 -578 5766 5582 978 207 40 0 chrX 82655628 82655826 -79944104 + MLT2B1 LTR ERVL 1 206 -314 1435 209 25 11 chrX 82655834 82656117 -79943813 + MLT1A1 LTR MaLR 1 287 -78 1134 263 107 11 chrX 82656222 82656302 -79943628 - L1MC/D LINE L1 -1117 5029 4958 195 42 0 0 chrX 82656302 82656326 -79943604 + (TG)n Simple_repeat Simple_repeat 1 24 0 1134 263 107 11 chrX 82656326 82656769 -79943161 - L1MC/D LINE L1 -1188 4958 4456 22 35 0 0 chrX 82656771 82656800 -79943130 + AT_rich Low_complexity Low_complexity 1 29 0 2475 268 47 35 chrX 82656845 82657922 -79942008 + L1M4 LINE L1 1015 2104 -4542 2816 276 48 10 chrX 82657935 82659103 -79940827 + L1M4 LINE L1 3052 4263 -2381 267 31 0 0 chrX 82659107 82659139 -79940791 + (TC)n Simple_repeat Simple_repeat 2 33 0 201 39 0 0 chrX 82659138 82659164 -79940766 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 886 64 48 0 chrX 82659558 82659683 -79940247 - AluY SINE Alu -35 276 146 182 261 65 0 chrX 82660087 82660133 -79939797 + L3 LINE CR1 1526 1574 -3 725 319 27 19 chrX 82661587 82661847 -79938083 - MIR SINE MIR 0 262 1 672 268 13 0 chrX 82662019 82662176 -79937754 - L2 LINE L2 -685 2629 2471 746 274 28 44 chrX 82662198 82662633 -79937297 + L1M4 LINE L1 3192 3619 -2527 1499 144 0 53 chrX 82663020 82663283 -79936647 + AluSx SINE Alu 43 291 -21 24 0 0 0 chrX 82663316 82663340 -79936590 + AT_rich Low_complexity Low_complexity 1 24 0 2144 202 23 43 chrX 82663470 82663795 -79936135 - L1M1 LINE L1 -6902 663 211 1391 201 10 17 chrX 82663795 82664089 -79935841 + AluJo SINE Alu 3 294 -18 2144 202 23 43 chrX 82664089 82664292 -79935638 - L1M1 LINE L1 -7354 211 5 913 224 22 4 chrX 82664659 82664891 -79935039 - L1MB4 LINE L1 0 6180 5945 309 246 0 0 chrX 82664885 82664950 -79934980 - L1M4b LINE L1 -2513 4444 4380 * 383 158 0 13 chrX 82664946 82665022 -79934908 + L1P LINE L1 3492 3566 -2580 808 294 62 12 chrX 82665029 82665532 -79934398 - L1M4b LINE L1 -2980 3977 3450 279 241 58 0 chrX 82665535 82665622 -79934308 - L1M4b LINE L1 -3579 3378 3287 1542 211 19 13 chrX 82665630 82666067 -79933863 - L1MD2 LINE L1 -22 6337 5745 399 243 57 16 chrX 82666066 82666274 -79933656 - L1M4b LINE L1 -4479 2479 2012 * 314 246 100 87 chrX 82666280 82666692 -79933238 - L1M4b LINE L1 -5056 1891 1367 * 1814 201 92 60 chrX 82666682 82667692 -79932238 - L1MC2 LINE L1 -11 6333 5260 189 109 55 0 chrX 82667703 82667758 -79932172 + (TA)n Simple_repeat Simple_repeat 1 58 0 391 233 19 10 chrX 82667761 82667864 -79932066 - L1MC2 LINE L1 -923 5223 5120 5561 31 3 1 chrX 82667878 82668548 -79931382 - L1PA2 LINE L1 -13 6142 5472 10867 99 17 1 chrX 82668666 82670343 -79929587 + L1P3 LINE L1 3772 5465 -707 2474 136 20 84 chrX 82670333 82670628 -79929302 + L1M1 LINE L1 2797 3109 -4456 * 1914 153 3 0 chrX 82670628 82670915 -79929015 + AluSq SINE Alu 1 288 -25 186 43 0 0 chrX 82670924 82670947 -79928983 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2474 136 20 84 chrX 82670947 82671092 -79928838 + L1M1 LINE L1 3117 3202 -4363 2313 89 3 3 chrX 82671092 82671405 -79928525 + AluSp SINE Alu 1 313 0 2474 136 20 84 chrX 82671405 82671547 -79928383 + L1M1 LINE L1 3202 3352 -4213 1004 179 31 5 chrX 82671529 82671752 -79928178 + L1M1 LINE L1 3205 3433 -4132 * 1391 159 68 30 chrX 82671759 82672055 -79927875 - THE1C LTR MaLR -66 309 3 7286 231 32 19 chrX 82672057 82674277 -79925653 + L1M1 LINE L1 3432 5679 -1886 312 91 0 0 chrX 82674279 82674323 -79925607 + (TA)n Simple_repeat Simple_repeat 2 45 0 226 194 29 29 chrX 82674461 82674564 -79925366 + C-rich Low_complexity Low_complexity 2 104 0 2010 116 2 30 chrX 82674665 82675112 -79924818 - L1P4 LINE L1 -680 5488 5049 * 19402 196 20 12 chrX 82675109 82677351 -79922579 + L1PA13 LINE L1 875 3097 -3066 2068 79 3 97 chrX 82677351 82677680 -79922250 + AluY SINE Alu 1 298 -13 19402 196 20 12 chrX 82677680 82678036 -79921894 + L1PA13 LINE L1 3097 3449 -2714 267 54 0 0 chrX 82678036 82678073 -79921857 + (CAA)n Simple_repeat Simple_repeat 2 38 0 19402 196 20 12 chrX 82678073 82680713 -79919217 + L1PA13 LINE L1 3449 6162 -1 2338 158 19 39 chrX 82680705 82681225 -79918705 + L1M1 LINE L1 2717 3226 -4339 * 6921 226 13 13 chrX 82681360 82683047 -79916883 - L1PA13 LINE L1 -4147 2650 950 627 284 56 31 chrX 82683056 82683500 -79916430 - L1M4 LINE L1 -768 5378 4924 14199 210 73 9 chrX 82683662 82686756 -79913174 + L1M1 LINE L1 22 3313 -4252 899 310 55 13 chrX 82686761 82687145 -79912785 - L1ME LINE L1 -5664 406 7 472 335 91 5 chrX 82687236 82687445 -79912485 - MIR SINE MIR -4 258 32 335 278 79 16 chrX 82687593 82687719 -79912211 - MIR SINE MIR -8 254 121 27 49 0 0 chrX 82688322 82688363 -79911567 + AT_rich Low_complexity Low_complexity 1 41 0 248 257 29 0 chrX 82688452 82688522 -79911408 - L1MC4 LINE L1 -1339 6703 6632 2060 241 65 26 chrX 82688528 82688776 -79911154 - MLT1F1 LTR MaLR -10 557 320 1789 173 119 16 chrX 82688776 82689164 -79910766 - MSTA LTR MaLR 0 428 1 2060 241 65 26 chrX 82689164 82689451 -79910479 - MLT1F1 LTR MaLR -247 320 1 251 232 0 0 chrX 82689580 82689636 -79910294 - L1MC4 LINE L1 -1338 6704 6649 465 252 81 47 chrX 82689660 82689958 -79909972 + L1MC4a LINE L1 5702 6009 -1799 740 356 69 40 chrX 82690863 82691486 -79908444 + L2 LINE L2 2360 3011 -261 248 370 128 32 chrX 82691647 82691866 -79908064 + L2 LINE L2 3030 3269 -3 488 272 52 24 chrX 82691937 82692150 -79907780 + L1ME3 LINE L1 5937 6155 -7 463 318 40 17 chrX 82692195 82692371 -79907559 + MIR SINE MIR 42 221 -41 2094 113 7 3 chrX 82692373 82692680 -79907250 + AluSq SINE Alu 1 308 0 1722 191 53 90 chrX 82693024 82693548 -79906382 - MLT1D LTR MaLR 0 505 1 341 301 95 0 chrX 82694147 82694293 -79905637 + MIR3 SINE MIR 2 160 -48 415 74 12 37 chrX 82694427 82694508 -79905422 - Alu SINE Alu 0 309 231 180 0 0 0 chrX 82694812 82694832 -79905098 + (TA)n Simple_repeat Simple_repeat 1 20 0 23 68 0 0 chrX 82694919 82694963 -79904967 + AT_rich Low_complexity Low_complexity 1 44 0 4848 220 52 15 chrX 82695019 82697124 -79902806 + L1MB8 LINE L1 3981 6162 -16 518 328 51 11 chrX 82697315 82697492 -79902438 + MIR SINE MIR 14 197 -65 1996 230 71 19 chrX 82697849 82698969 -79900961 + L1ME1 LINE L1 4683 5858 -308 496 277 32 7 chrX 82698993 82699148 -79900782 + L1MA10 LINE L1 6169 6327 -7 241 213 0 0 chrX 82699812 82699859 -79900071 + Charlie5 DNA MER1_type 18 64 -2548 611 156 43 7 chrX 82699873 82700014 -79899916 + Charlie5 DNA MER1_type 2440 2585 -27 182 320 116 41 chrX 82700124 82700271 -79899659 - MIR SINE MIR 0 262 105 1360 76 24 19 chrX 82701136 82701347 -79898583 - AluY SINE Alu -10 301 90 227 285 41 16 chrX 82701530 82701653 -79898277 + L1ME LINE L1 5602 5727 -394 30 0 0 0 chrX 82702180 82702210 -79897720 + AT_rich Low_complexity Low_complexity 1 30 0 3767 163 44 6 chrX 82703124 82703447 -79896483 + L1MB1 LINE L1 5438 5747 -442 485 99 12 0 chrX 82703447 82703528 -79896402 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 3767 163 44 6 chrX 82703528 82703890 -79896040 + L1MB1 LINE L1 5747 6149 -40 1520 290 138 16 chrX 82703969 82704600 -79895330 - L2 LINE L2 -375 2939 2232 946 243 44 30 chrX 82704612 82704908 -79895022 - MSTB LTR MaLR -8 418 119 203 116 27 68 chrX 82704963 82705109 -79894821 + A-rich Low_complexity Low_complexity 3 142 0 10959 221 16 9 chrX 82705257 82708061 -79891869 + L1M1 LINE L1 3504 6331 -1234 2701 165 65 14 chrX 82708059 82708616 -79891314 - L1MA4A LINE L1 -202 6101 5517 * 1891 208 36 44 chrX 82708616 82709140 -79890790 - L1MA9 LINE L1 -54 6258 5739 673 253 6 13 chrX 82709171 82709329 -79890601 + MLT1B LTR MaLR 232 388 -2 441 292 58 22 chrX 82709331 82709557 -79890373 - L1ME LINE L1 -555 5607 5374 14690 203 5 10 chrX 82709560 82713708 -79886222 - L1PA13 LINE L1 -5 6861 2735 21 57 0 0 chrX 82764072 82764107 -79835823 + AT_rich Low_complexity Low_complexity 1 35 0 2111 113 0 7 chrX 82764553 82764845 -79835085 + AluSc SINE Alu 1 290 -19 315 182 30 0 chrX 82764850 82764916 -79835014 + L1MC4 LINE L1 6636 6703 -1339 746 145 22 17 chrX 82764941 82765120 -79834810 + (TA)n Simple_repeat Simple_repeat 1 180 0 461 141 0 0 chrX 82765501 82765572 -79834358 + L1PA8 LINE L1 6093 6163 -9 2061 176 63 26 chrX 82766399 82766912 -79833018 + MLT2A2 LTR ERVL 1 554 0 2215 104 0 3 chrX 82767491 82767800 -79832130 - AluSq SINE Alu -3 310 3 1986 138 0 0 chrX 82767805 82768102 -79831828 - AluSx SINE Alu -15 297 1 3239 58 53 0 chrX 82770055 82770094 -79829836 - MLT2A1 LTR ERVL -1 443 408 369 0 0 0 chrX 82770094 82770135 -79829795 + (TA)n Simple_repeat Simple_repeat 2 42 0 3239 58 53 0 chrX 82770135 82770512 -79829418 - MLT2A1 LTR ERVL -36 408 5 24625 88 6 2 chrX 82770516 82773781 -79826149 - HERVL-A1 LTR ERVL 0 5654 2378 12525 80 1 5 chrX 82773777 82775427 -79824503 - HERVL-A1 LTR ERVL -4011 1643 1 * 3019 85 17 52 chrX 82775427 82775887 -79824043 - MLT2A1 LTR ERVL 0 444 1 1455 290 33 20 chrX 82775887 82776435 -79823495 + L1ME1 LINE L1 5607 6161 -5 28 61 0 0 chrX 82776439 82776488 -79823442 + AT_rich Low_complexity Low_complexity 1 49 0 7426 32 1 0 chrX 82776658 82778138 -79821792 - L1PA3 LINE L1 0 6155 4673 2374 160 96 0 chrX 82778600 82779026 -79820904 + LTR24 LTR ERV1 1 467 0 663 247 64 98 chrX 82780049 82780559 -79819371 + MER34C LTR ERV1 9 469 -73 3973 127 13 2 chrX 82780559 82781187 -79818743 + MER41B LTR ERV1 1 635 0 663 247 64 98 chrX 82781187 82781259 -79818671 + MER34C LTR ERV1 469 542 0 698 244 82 57 chrX 82781534 82781973 -79817957 - LTR48 LTR ERV1 0 787 141 299 336 8 23 chrX 82781945 82782073 -79817857 - MER34 LTR ERV1 -416 126 1 * 5153 196 16 20 chrX 82783238 82785277 -79814653 + L1PA16 LINE L1 4125 6150 -16 1250 243 54 7 chrX 82785268 82785692 -79814238 + L1 LINE L1 3181 3624 -2522 * 530 215 46 64 chrX 82785694 82785939 -79813991 + MLT1A1 LTR MaLR 3 258 -138 627 315 0 6 chrX 82785953 82786134 -79813796 + MLT1A1 LTR MaLR 186 365 0 2487 246 38 14 chrX 82786142 82786834 -79813096 + L1 LINE L1 3628 4335 -1811 685 193 7 60 chrX 82787256 82787406 -79812524 - MER54A LTR ERVL -198 703 562 1085 85 23 6 chrX 82787547 82787723 -79812207 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 426 85 0 0 chrX 82787730 82787789 -79812141 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 22 56 0 0 chrX 82788040 82788076 -79811854 + AT_rich Low_complexity Low_complexity 1 36 0 802 188 43 136 chrX 82788182 82788376 -79811554 - L1MB3 LINE L1 -17 6166 5978 253 62 0 0 chrX 82788376 82788408 -79811522 - tRNA-Gly-GGA tRNA tRNA -36 39 8 802 188 43 136 chrX 82788408 82788506 -79811424 - L1MB3 LINE L1 -205 5978 5873 900 233 10 5 chrX 82788509 82788715 -79811215 - MER54A LTR ERVL 0 901 695 334 232 37 0 chrX 82788730 82788894 -79811036 + (TA)n Simple_repeat Simple_repeat 1 170 0 2415 196 72 40 chrX 82788913 82789137 -79810793 - MER54A LTR ERVL -187 714 499 756 67 25 0 chrX 82789137 82789257 -79810673 + (TC)n Simple_repeat Simple_repeat 2 124 0 2415 196 72 40 chrX 82789257 82789558 -79810372 - MER54A LTR ERVL -402 499 172 2525 255 69 22 chrX 82789560 82790583 -79809347 - L1 LINE L1 -921 5461 4391 845 222 25 18 chrX 82790584 82790791 -79809139 - MLT2D LTR ERVL -132 282 79 2352 244 75 42 chrX 82790815 82792712 -79807218 - L1 LINE L1 -3592 2790 781 1230 30 0 39 chrX 82793154 82793429 -79806501 + (TTTC)n Simple_repeat Simple_repeat 1 264 0 252 203 0 34 chrX 82793549 82793608 -79806322 - L1 LINE L1 -6078 235 179 21 36 0 0 chrX 82793696 82793724 -79806206 + AT_rich Low_complexity Low_complexity 1 28 0 185 291 18 0 chrX 82793874 82793929 -79806001 + MIR3 SINE MIR 124 179 -29 5107 268 65 26 chrX 82794032 82795414 -79804516 - L1M2 LINE L1 -5412 1437 2 302 45 23 0 chrX 82796124 82796168 -79803762 + (TG)n Simple_repeat Simple_repeat 1 45 0 231 36 0 0 chrX 82796167 82796195 -79803735 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 288 253 11 53 chrX 82796202 82796297 -79803633 - MLT2C1 LTR ERVL -48 349 259 539 235 10 97 chrX 82796335 82796531 -79803399 - MLT2B1 LTR ERVL -228 292 114 225 301 154 35 chrX 82797488 82797631 -79802299 + MIR SINE MIR 19 178 -84 24 32 0 0 chrX 82797812 82797843 -79802087 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chrX 82797924 82797967 -79801963 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chrX 82798768 82798794 -79801136 + AT_rich Low_complexity Low_complexity 1 26 0 755 313 53 55 chrX 82798816 82799365 -79800565 + ERVL LTR ERVL 4847 5394 -370 462 314 92 30 chrX 82799566 82799841 -79800089 + LTR33 LTR ERVL 4 280 -243 282 278 185 0 chrX 82800268 82800376 -79799554 - L2 LINE L2 -1 3271 3144 28 48 0 0 chrX 82800481 82800523 -79799407 + AT_rich Low_complexity Low_complexity 1 42 0 3782 210 60 29 chrX 82800617 82800905 -79799025 - L1MB4 LINE L1 -3 6065 5788 4041 92 5 5 chrX 82800905 82801482 -79798448 - L1PA13 LINE L1 -1 6162 5586 3782 210 60 29 chrX 82801482 82802468 -79797462 - L1MB4 LINE L1 -280 5788 4733 1318 226 95 19 chrX 82802468 82802836 -79797094 - MSTD LTR MaLR 0 396 1 3782 210 60 29 chrX 82802836 82803172 -79796758 - L1MB4 LINE L1 -1335 4733 4409 1775 201 8 28 chrX 82803168 82803562 -79796368 - L1MB4 LINE L1 -2211 3823 3438 * 472 207 35 0 chrX 82803563 82803679 -79796251 - L1 LINE L1 -1625 4521 4402 2857 230 45 21 chrX 82803686 82805080 -79794850 - L1MB4 LINE L1 -3884 2152 641 2236 83 6 21 chrX 82805675 82806002 -79793928 + L1PA8 LINE L1 5851 6172 0 718 305 132 25 chrX 82806148 82806505 -79793425 + LTR16C LTR ERVL 97 491 0 338 364 23 17 chrX 82807352 82807644 -79792286 + MLT1I LTR MaLR 88 409 0 228 397 63 11 chrX 82808435 82808609 -79791321 - MER5A DNA MER1_type 0 189 7 27 81 0 0 chrX 82809070 82809132 -79790798 + AT_rich Low_complexity Low_complexity 1 62 0 25 51 0 0 chrX 82809241 82809280 -79790650 + AT_rich Low_complexity Low_complexity 1 39 0 486 49 0 0 chrX 82809350 82809411 -79790519 + (TA)n Simple_repeat Simple_repeat 2 62 0 1386 314 14 7 chrX 82810793 82811230 -79788700 - L1MB4 LINE L1 -5505 450 11 225 200 125 58 chrX 82811295 82811415 -79788515 - L1 LINE L1 -2846 3300 3173 * 573 119 0 0 chrX 82811394 82811478 -79788452 - L1M2 LINE L1 -556 5744 5661 1520 183 56 3 chrX 82811478 82811814 -79788116 + L1MA6 LINE L1 5933 6288 -12 202 213 13 53 chrX 82811847 82811922 -79788008 + T-rich Low_complexity Low_complexity 2 73 0 9129 194 17 8 chrX 82812407 82814194 -79785736 - L1PA15 LINE L1 -3 6162 4337 4725 37 0 3 chrX 82814194 82814763 -79785167 - L1PA5 LINE L1 0 6154 5588 9129 194 17 8 chrX 82814763 82815846 -79784084 - L1PA15 LINE L1 -1828 4337 3264 3487 93 22 0 chrX 82815846 82816351 -79783579 - L1PA10 LINE L1 0 6168 5653 7267 228 32 38 chrX 82816453 82820488 -79779442 + L1MA3 LINE L1 2816 6701 -306 1314 115 0 0 chrX 82820494 82820694 -79779236 + L1MA3 LINE L1 6806 7005 -2 21 36 0 0 chrX 82820695 82820723 -79779207 + AT_rich Low_complexity Low_complexity 1 28 0 884 283 52 0 chrX 82821027 82821260 -79778670 + MIR SINE MIR 5 249 -13 999 130 49 49 chrX 82821511 82822180 -79777750 + LTR1 LTR ERV1 1 775 -10 741 308 105 35 chrX 82822279 82822899 -79777031 - L1M4 LINE L1 -743 5403 4741 394 244 16 16 chrX 82823411 82823534 -79776396 + HsTC2 DNA Tc2 1775 1897 -1 230 276 23 0 chrX 82823659 82823746 -79776184 + L1ME LINE L1 5685 5773 -389 509 401 17 3 chrX 82824394 82824738 -79775192 + L1MEc LINE L1 32 380 -6016 2169 65 9 86 chrX 82824992 82825328 -79774602 + AluY SINE Alu 1 310 -1 1708 249 37 42 chrX 82825339 82825961 -79773969 + L1P3 LINE L1 3 727 -5148 * 5736 135 20 1 chrX 82825959 82827433 -79772497 + L1PA10 LINE L1 4659 6157 -11 18916 53 1 0 chrX 82827782 82830193 -79769737 + L1P LINE L1 2882 5294 -852 42397 39 23 1 chrX 82830293 82835698 -79764232 - L1P2 LINE L1 -628 5527 1 1594 233 31 60 chrX 82835702 82836347 -79763583 - L1M4 LINE L1 -1009 5137 4512 3720 73 2 0 chrX 82836348 82836839 -79763091 - L1PA6 LINE L1 -5 6149 5658 1841 282 51 37 chrX 82837031 82837927 -79762003 - L1ME3A LINE L1 -1 6169 5261 204 40 0 0 chrX 82837970 82837995 -79761935 + (TG)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chrX 82838051 82838084 -79761846 + AT_rich Low_complexity Low_complexity 1 33 0 198 171 0 0 chrX 82838084 82838125 -79761805 + (TA)n Simple_repeat Simple_repeat 1 41 0 1819 147 0 14 chrX 82838434 82838713 -79761217 + AluSx SINE Alu 3 277 -35 198 0 0 0 chrX 82838713 82838735 -79761195 + (TC)n Simple_repeat Simple_repeat 2 23 0 243 157 0 0 chrX 82838735 82838786 -79761144 + (TA)n Simple_repeat Simple_repeat 1 51 0 245 250 163 0 chrX 82838873 82838953 -79760977 - L1ME3A LINE L1 -1315 4831 4739 1459 207 24 93 chrX 82839219 82839587 -79760343 + MLT2D LTR ERVL 33 372 -42 216 0 0 0 chrX 82839587 82839611 -79760319 + (CA)n Simple_repeat Simple_repeat 2 25 0 1459 207 24 93 chrX 82839611 82839652 -79760278 + MLT2D LTR ERVL 372 414 0 26 64 0 0 chrX 82840163 82840210 -79759720 + AT_rich Low_complexity Low_complexity 1 47 0 333 316 118 41 chrX 82840374 82840883 -79759047 + L1M4 LINE L1 2271 2818 -3328 637 263 47 0 chrX 82840931 82841121 -79758809 + L1MCa LINE L1 61 259 -6167 * 3398 195 33 42 chrX 82841119 82842082 -79757848 + L1MCa LINE L1 776 1823 -4603 360 146 0 107 chrX 82842086 82842189 -79757741 + L1M1 LINE L1 16 107 -7458 189 0 0 0 chrX 82842189 82842210 -79757720 + (A)n Simple_repeat Simple_repeat 1 21 0 3764 202 33 1 chrX 82842242 82842930 -79757000 + L1M1 LINE L1 100 809 -6756 2475 197 4 44 chrX 82842930 82843134 -79756796 - MER73 LTR ERVL -143 501 290 312 27 0 0 chrX 82843134 82843171 -79756759 + (TC)n Simple_repeat Simple_repeat 2 38 0 2475 197 4 44 chrX 82843171 82843488 -79756442 - MER73 LTR ERVL -354 290 1 427 259 24 42 chrX 82843488 82843655 -79756275 + MLT1A2 LTR MaLR 126 305 -85 5066 196 16 17 chrX 82843696 82844775 -79755155 + L1MC1 LINE L1 5254 6331 -2 290 198 88 11 chrX 82844834 82844925 -79755005 + L1MCa LINE L1 3159 3256 -3170 1877 285 9 19 chrX 82845092 82845633 -79754297 + L1MDa LINE L1 20 555 -5985 213 284 43 7 chrX 82845825 82845966 -79753964 + (TA)n Simple_repeat Simple_repeat 2 147 0 290 350 190 0 chrX 82846487 82846624 -79753306 + MER5A DNA MER1_type 26 188 -1 2288 90 3 0 chrX 82847706 82848007 -79751923 + AluSx SINE Alu 11 312 0 192 97 0 0 chrX 82848230 82848261 -79751669 + (T)n Simple_repeat Simple_repeat 1 31 0 2776 209 45 1 chrX 82848717 82849378 -79750552 - L1MA9 LINE L1 -1151 4995 4306 2808 166 32 19 chrX 82849389 82850187 -79749743 + L1MA9 LINE L1 4995 5797 -515 201 132 0 0 chrX 82850262 82850300 -79749630 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2029 117 3 0 chrX 82850326 82850674 -79749256 + AluSx SINE Alu 1 349 0 2103 181 11 30 chrX 82850674 82850974 -79748956 + L1MA9 LINE L1 5856 6145 -167 195 42 0 0 chrX 82850974 82850998 -79748932 + (CA)n Simple_repeat Simple_repeat 1 24 0 2103 181 11 30 chrX 82850998 82851161 -79748769 + L1MA9 LINE L1 6145 6310 -2 384 226 21 0 chrX 82851198 82851291 -79748639 - MLT1A2 LTR MaLR -279 95 1 2815 250 59 94 chrX 82851303 82852665 -79747265 - MLT1A1-int LTR MaLR -14 1357 44 2085 124 10 91 chrX 82853212 82853630 -79746300 - L1PA15 LINE L1 0 6165 5782 287 244 0 22 chrX 82853663 82853753 -79746177 - L1MC4 LINE L1 -1341 6701 6614 2160 161 16 0 chrX 82853778 82854151 -79745779 - L1PA15 LINE L1 -374 5791 5413 204 40 0 0 chrX 82854151 82854176 -79745754 + (T)n Simple_repeat Simple_repeat 1 25 0 1294 84 0 0 chrX 82854589 82854755 -79745175 - AluSg/x SINE Alu -14 296 131 10579 201 14 17 chrX 82854913 82855647 -79744283 - L1PA15 LINE L1 -733 5428 4693 366 23 0 0 chrX 82855647 82855690 -79744240 + (TG)n Simple_repeat Simple_repeat 2 44 0 10579 201 14 17 chrX 82855690 82857391 -79742539 - L1PA15 LINE L1 -1468 4693 2996 541 280 7 7 chrX 82857396 82857539 -79742391 - MLT1A1 LTR MaLR -56 309 167 272 145 0 16 chrX 82857543 82857605 -79742325 + (GA)n Simple_repeat Simple_repeat 2 62 0 646 186 55 7 chrX 82857615 82857760 -79742170 - MLT1A1 LTR MaLR -213 152 1 303 280 76 45 chrX 82858255 82858412 -79741518 - L1ME LINE L1 -2880 3200 3039 442 315 113 24 chrX 82858416 82859201 -79740729 - L1ME LINE L1 -4312 1949 1095 417 285 94 21 chrX 82859204 82859604 -79740326 - L1ME LINE L1 -5059 1011 556 5075 230 62 19 chrX 82860322 82860539 -79739391 + L1MB8 LINE L1 3544 3750 -2428 321 26 0 0 chrX 82860539 82860577 -79739353 + (TC)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chrX 82860576 82860596 -79739334 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 5075 230 62 19 chrX 82860577 82862889 -79737041 + L1MB8 LINE L1 3750 6162 -16 518 328 51 11 chrX 82863080 82863257 -79736673 + MIR SINE MIR 14 197 -65 1996 230 71 19 chrX 82863614 82864734 -79735196 + L1ME1 LINE L1 4683 5858 -308 496 277 32 7 chrX 82864758 82864913 -79735017 + L1MA10 LINE L1 6169 6327 -7 241 213 0 0 chrX 82865577 82865624 -79734306 + Charlie5 DNA MER1_type 18 64 -2548 611 156 43 7 chrX 82865638 82865779 -79734151 + Charlie5 DNA MER1_type 2440 2585 -27 182 320 116 41 chrX 82865889 82866036 -79733894 - MIR SINE MIR 0 262 105 1646 60 0 19 chrX 82866901 82867117 -79732813 - AluY SINE Alu -10 301 90 227 285 41 16 chrX 82867300 82867423 -79732507 + L1MC4a LINE L1 5602 5727 -394 30 0 0 0 chrX 82867950 82867980 -79731950 + AT_rich Low_complexity Low_complexity 1 30 0 3767 163 44 6 chrX 82868894 82869217 -79730713 + L1MB1 LINE L1 5438 5747 -442 485 99 12 0 chrX 82869217 82869298 -79730632 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 3767 163 44 6 chrX 82869298 82869660 -79730270 + L1MB1 LINE L1 5747 6149 -40 1558 293 137 14 chrX 82869739 82870373 -79729557 - L2 LINE L2 -375 2939 2228 2278 181 29 2 chrX 82870378 82870786 -79729144 - MSTB LTR MaLR -7 419 1 254 375 54 0 chrX 82870807 82870919 -79729011 - L2 LINE L2 -1108 2206 2089 27 49 0 0 chrX 82871035 82871076 -79728854 + AT_rich Low_complexity Low_complexity 1 41 0 248 257 29 0 chrX 82871165 82871235 -79728695 - L1MC4 LINE L1 -1339 6703 6632 1341 217 97 26 chrX 82871241 82871769 -79728161 - MSTA LTR MaLR 0 428 132 524 163 0 11 chrX 82871888 82871980 -79727950 - MSTA LTR MaLR -337 91 1 1222 254 17 7 chrX 82871980 82872267 -79727663 - MLT1F1 LTR MaLR -277 290 1 251 232 0 0 chrX 82872396 82872452 -79727478 - L1MC4 LINE L1 -1338 6704 6649 465 252 81 47 chrX 82872476 82872774 -79727156 + L1MC4a LINE L1 5702 6009 -1799 740 356 69 40 chrX 82873679 82874302 -79725628 + L2 LINE L2 2360 3011 -261 248 370 128 32 chrX 82874463 82874682 -79725248 + L2 LINE L2 3030 3269 -3 488 272 52 24 chrX 82874753 82874966 -79724964 + L1ME3 LINE L1 5937 6155 -7 463 318 40 17 chrX 82875011 82875187 -79724743 + MIR SINE MIR 42 221 -41 2173 116 0 0 chrX 82875189 82875497 -79724433 + AluSq SINE Alu 1 308 0 1722 191 53 90 chrX 82875841 82876365 -79723565 - MLT1D LTR MaLR 0 505 1 341 301 95 0 chrX 82876964 82877110 -79722820 + MIR3 SINE MIR 2 160 -48 1230 62 31 0 chrX 82877246 82877407 -79722523 - AluY SINE Alu 0 311 146 182 261 65 0 chrX 82877811 82877857 -79722073 + L3 LINE CR1 1526 1574 -3 725 319 27 19 chrX 82879311 82879571 -79720359 - MIR SINE MIR 0 262 1 672 268 13 0 chrX 82879743 82879900 -79720030 - L2 LINE L2 -685 2629 2471 746 274 28 44 chrX 82879922 82880357 -79719573 + L1MC2 LINE L1 3192 3619 -2527 1517 147 0 53 chrX 82880744 82881010 -79718920 + AluSx SINE Alu 43 294 -18 228 73 0 0 chrX 82881022 82881063 -79718867 + LTR66 LTR ERVL 398 438 -172 194 170 0 21 chrX 82881070 82881117 -79718813 + (TA)n Simple_repeat Simple_repeat 1 46 0 249 267 47 0 chrX 82881130 82881216 -79718714 - L1MC4 LINE L1 -1339 6703 6614 223 351 53 8 chrX 82881413 82881544 -79718386 + L2 LINE L2 3113 3249 -23 2022 33 0 0 chrX 82881827 82882072 -79717858 + L1PA2 LINE L1 5909 6153 -2 1842 208 129 81 chrX 82882076 82883252 -79716678 + L1MC2 LINE L1 5122 6333 -11 314 246 100 87 chrX 82883242 82883654 -79716276 + L1M4b LINE L1 1367 1891 -5056 * 399 243 57 16 chrX 82883660 82883868 -79716062 + L1M4b LINE L1 2012 2479 -4479 * 1542 208 17 14 chrX 82883867 82884304 -79715626 + L1MD2 LINE L1 5745 6337 -22 279 241 58 0 chrX 82884312 82884399 -79715531 + L1M4b LINE L1 3287 3378 -3579 808 294 62 12 chrX 82884402 82884905 -79715025 + L1M4b LINE L1 3450 3977 -2980 383 158 0 13 chrX 82884912 82884988 -79714942 - L1P LINE L1 -2580 3566 3492 273 254 0 0 chrX 82884984 82885043 -79714887 + L1M4b LINE L1 4380 4438 -2519 * 896 220 22 4 chrX 82885043 82885275 -79714655 + L1MB4 LINE L1 5945 6180 0 10750 190 102 13 chrX 82885642 82885845 -79714085 + L1M1 LINE L1 5 189 -7376 1426 201 10 14 chrX 82885845 82886138 -79713792 - AluJo SINE Alu -18 294 3 10750 190 102 13 chrX 82886138 82888066 -79711864 + L1M1 LINE L1 189 2325 -5240 * 27617 130 50 61 chrX 82888060 82893583 -79706347 + L1P3 LINE L1 13 5465 -707 2096 133 18 55 chrX 82893573 82893868 -79706062 + L1M1 LINE L1 2797 3102 -4463 * 1914 153 3 0 chrX 82893868 82894155 -79705775 + AluSq SINE Alu 1 288 -25 186 43 0 0 chrX 82894164 82894187 -79705743 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2096 133 18 55 chrX 82894187 82894332 -79705598 + L1M1 LINE L1 3110 3230 -4335 697 82 0 0 chrX 82894332 82894429 -79705501 + AluS SINE Alu 1 97 -216 3304 100 0 19 chrX 82894536 82895205 -79704725 - L1P4 LINE L1 -459 5709 5049 * 19492 196 20 12 chrX 82895202 82897444 -79702486 + L1PA13 LINE L1 875 3097 -3066 2226 60 0 102 chrX 82897444 82897776 -79702154 + AluY SINE Alu 1 298 -13 19492 196 20 12 chrX 82897776 82898133 -79701797 + L1PA13 LINE L1 3097 3450 -2713 267 54 0 0 chrX 82898133 82898170 -79701760 + (CAA)n Simple_repeat Simple_repeat 2 38 0 19492 196 20 12 chrX 82898170 82900809 -79699121 + L1PA13 LINE L1 3450 6162 -1 10745 209 17 14 chrX 82900801 82904400 -79695530 + L1M1 LINE L1 2717 6331 -1234 * 2678 163 65 14 chrX 82904398 82904955 -79694975 - L1MA4A LINE L1 -202 6101 5517 * 1865 208 36 44 chrX 82904955 82905479 -79694451 - L1MA9 LINE L1 -54 6258 5739 670 253 6 13 chrX 82905510 82905668 -79694262 + MLT1B LTR MaLR 232 388 -2 421 292 58 22 chrX 82905670 82905896 -79694034 - L1ME LINE L1 -555 5541 5308 16749 211 7 11 chrX 82905899 82911774 -79688156 - L1PA14 LINE L1 -3 6809 950 572 284 56 31 chrX 82911783 82912227 -79687703 - L1ME LINE L1 -768 5312 4858 14301 210 73 8 chrX 82912389 82915481 -79684449 + L1M1 LINE L1 22 3313 -4252 887 310 55 13 chrX 82915486 82915870 -79684060 - L1ME LINE L1 -5664 406 7 465 335 91 5 chrX 82915961 82916170 -79683760 - MIR SINE MIR -4 258 32 298 312 0 0 chrX 82916318 82916411 -79683519 - MIR SINE MIR -8 254 162 674 185 20 20 chrX 82916535 82916686 -79683244 - L1MD2 LINE L1 -15 6344 6194 726 282 47 20 chrX 82916690 82916945 -79682985 - L1MD2 LINE L1 -219 6140 5879 792 256 39 37 chrX 82916945 82917328 -79682602 - L1MD2 LINE L1 -1306 4840 4457 2518 237 29 15 chrX 82917396 82917991 -79681939 + L1M1 LINE L1 16 618 -6947 1456 110 70 9 chrX 82918018 82918246 -79681684 - MLT2A1 LTR ERVL -202 242 1 7545 80 9 0 chrX 82918246 82918671 -79681259 - HERVL-A1 LTR ERVL 0 5654 5234 207 0 0 0 chrX 82918671 82918694 -79681236 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7545 80 9 0 chrX 82918694 82919244 -79680686 - HERVL-A1 LTR ERVL -420 5234 4670 11245 198 31 10 chrX 82919244 82919794 -79680136 - L1 LINE L1 -1110 6455 5918 2057 140 76 15 chrX 82919794 82920137 -79679793 - THE1B LTR MaLR 0 364 1 11245 198 31 10 chrX 82920137 82923482 -79676448 - L1 LINE L1 -1647 5918 2478 8030 228 36 18 chrX 82923488 82925229 -79674701 - L1 LINE L1 -5785 1780 8 4136 180 29 1 chrX 82925416 82926182 -79673748 + Tigger1 DNA MER2_type 105 891 -1527 2770 189 6 15 chrX 82926304 82926844 -79673086 + Tigger1 DNA MER2_type 927 1461 -957 4979 202 16 10 chrX 82926844 82928730 -79671200 - L1PA15 LINE L1 -13 6855 4961 950 252 20 6 chrX 82928727 82929216 -79670714 - L1PA15 LINE L1 -3628 3221 2531 * 8536 214 29 22 chrX 82929192 82929537 -79670393 - L1 LINE L1 -1740 5109 4768 2953 123 5 0 chrX 82929537 82929969 -79669961 - MER57B LTR ERV1 0 434 1 8536 214 29 22 chrX 82929969 82930136 -79669794 - L1 LINE L1 -2081 4768 4604 2301 98 0 3 chrX 82930136 82930442 -79669488 - AluY SINE Alu -6 305 1 8536 214 29 22 chrX 82930442 82932478 -79667452 - L1 LINE L1 -2245 4604 2539 1359 245 39 60 chrX 82932996 82933462 -79666468 - MER50-int LTR ERV1 -878 4002 3547 * 1831 244 91 5 chrX 82933449 82934045 -79665885 - MER50-int LTR ERV1 -3417 3079 1003 7328 127 23 1 chrX 82934060 82935135 -79664795 - L1PA7 LINE L1 -5348 1113 15 * 29051 96 2 44 chrX 82935133 82940700 -79659230 + L1PA7 LINE L1 1141 6466 -3 343 319 90 72 chrX 82940783 82941282 -79658648 - MER50-int LTR ERV1 -4575 2630 2123 7495 231 28 12 chrX 82941539 82941618 -79658312 + L1M1 LINE L1 17 93 -7472 230 54 0 27 chrX 82941618 82941655 -79658275 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 7495 231 28 12 chrX 82941655 82943210 -79656720 + L1M1 LINE L1 93 1677 -5888 6086 150 36 10 chrX 82943210 82944779 -79655151 + L1MA1 LINE L1 4687 6297 -5 21 0 0 0 chrX 82944789 82944810 -79655120 + AT_rich Low_complexity Low_complexity 1 21 0 2072 296 30 44 chrX 82944883 82945902 -79654028 - MER50-int LTR ERV1 -5401 1804 682 343 286 246 6 chrX 82946192 82946363 -79653567 - MER50 LTR ERV1 -23 711 500 331 235 35 24 chrX 82946630 82946715 -79653215 - MER50 LTR ERV1 -632 102 17 1118 116 0 193 chrX 82946732 82947033 -79652897 + Tigger1 DNA MER2_type 1991 2233 -185 4992 154 33 9 chrX 82947033 82947949 -79651981 - L1MA4A LINE L1 -8 6295 5358 1088 188 0 0 chrX 82947951 82948143 -79651787 + Tigger1 DNA MER2_type 2227 2418 0 22 70 0 0 chrX 82948420 82948463 -79651467 + AT_rich Low_complexity Low_complexity 1 43 0 1319 219 60 0 chrX 82949066 82949349 -79650581 + AluJo SINE Alu 3 302 0 2166 121 3 0 chrX 82949382 82949679 -79650251 - AluSq SINE Alu -5 308 11 990 339 36 33 chrX 82949681 82950530 -79649400 - L1MEc LINE L1 -5510 886 35 527 355 25 0 chrX 82950674 82950877 -79649053 + MIR SINE MIR 45 252 -10 273 259 90 43 chrX 82950974 82951122 -79648808 - MLT1J2 LTR MaLR 0 549 308 417 276 14 105 chrX 82951264 82951474 -79648456 - MLT1H LTR MaLR -321 228 38 6072 151 12 4 chrX 82951605 82952746 -79647184 + L1MA2 LINE L1 5155 6304 0 24 32 0 0 chrX 82956380 82956411 -79643519 + AT_rich Low_complexity Low_complexity 1 31 0 979 169 0 0 chrX 82956710 82956864 -79643066 - AluJb SINE Alu -158 154 1 253 149 0 43 chrX 82956864 82956911 -79643019 + MSTA LTR MaLR 384 428 0 2155 207 63 13 chrX 82956911 82957641 -79642289 - L1MCa LINE L1 -3689 2737 1969 7752 53 1 1 chrX 82957641 82959401 -79640529 - L1PA5 LINE L1 -4 6150 4390 2297 86 0 0 chrX 82959401 82959714 -79640216 + L1P LINE L1 3330 3642 -2504 * 7136 217 22 48 chrX 82959709 82962299 -79637631 - L1P3 LINE L1 -3928 2533 10 6647 154 31 2 chrX 82962306 82963683 -79636247 - L1 LINE L1 -3753 3812 2397 368 291 0 79 chrX 82963728 82963855 -79636075 + L2 LINE L2 3195 3311 -2 441 36 0 0 chrX 82964239 82964294 -79635636 + (TG)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chrX 82964694 82964717 -79635213 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chrX 82965366 82965392 -79634538 + (T)n Simple_repeat Simple_repeat 1 26 0 1414 255 34 11 chrX 82967565 82967922 -79632008 + MLT1A1 LTR MaLR 1 365 0 229 156 0 0 chrX 82968515 82968560 -79631370 - L1MA2 LINE L1 -116 6188 6144 24 0 0 0 chrX 82968644 82968668 -79631262 + AT_rich Low_complexity Low_complexity 1 24 0 6252 49 1 0 chrX 82970671 82971440 -79628490 - L1PA6 LINE L1 -1 6153 5384 23 0 0 0 chrX 82971470 82971493 -79628437 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chrX 82971555 82971586 -79628344 + (TA)n Simple_repeat Simple_repeat 1 31 0 308 296 122 0 chrX 82972342 82972440 -79627490 - MIR SINE MIR -105 157 48 29 28 0 0 chrX 82972666 82972702 -79627228 + AT_rich Low_complexity Low_complexity 1 36 0 382 113 0 0 chrX 82973658 82973720 -79626210 - L1M2 LINE L1 -794 5497 5436 645 111 34 0 chrX 82973720 82973818 -79626112 + L1MA7 LINE L1 6171 6291 0 247 279 135 0 chrX 82973852 82973956 -79625974 - L1ME LINE L1 -402 5719 5602 4550 248 34 63 chrX 82973975 82974125 -79625805 - L1MA9 LINE L1 -1 6311 6158 237 33 0 0 chrX 82974125 82974155 -79625775 + (TG)n Simple_repeat Simple_repeat 2 31 0 4550 248 34 63 chrX 82974155 82974358 -79625572 - L1MA9 LINE L1 -154 6158 5950 1413 193 35 21 chrX 82974358 82974526 -79625404 - AluJb SINE Alu -18 294 119 252 59 0 0 chrX 82974526 82974560 -79625370 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1413 193 35 21 chrX 82974560 82974681 -79625249 - AluJb SINE Alu -193 119 1 4550 248 34 63 chrX 82974681 82976034 -79623896 - L1MA9 LINE L1 -362 5950 4705 7410 28 4 18 chrX 82976034 82976967 -79622963 + L1PA4 LINE L1 5235 6155 0 4550 248 34 63 chrX 82976967 82977664 -79622266 - L1MA9 LINE L1 -1607 4705 3989 517 298 129 0 chrX 82977853 82978031 -79621899 + MIR SINE MIR 12 212 -50 202 339 0 0 chrX 82978031 82978096 -79621834 + MIR SINE MIR 185 249 -13 512 318 14 7 chrX 82978494 82978642 -79621288 + MIR SINE MIR 36 184 -78 499 314 49 44 chrX 82978892 82979442 -79620488 - L1M4 LINE L1 -2137 4009 3457 24 0 0 0 chrX 82980734 82980758 -79619172 + AT_rich Low_complexity Low_complexity 1 24 0 2275 193 50 108 chrX 82981002 82981739 -79618191 - LTR8A LTR ERV1 0 727 34 1398 273 72 44 chrX 82981807 82982370 -79617560 - MER77 LTR ERV1 -6 599 52 6420 72 5 5 chrX 82982485 82983978 -79615952 - L1PA8A LINE L1 -13 6118 4630 653 26 0 0 chrX 82984005 82984083 -79615847 - L1PA3 LINE L1 -3 6152 6075 10641 113 6 25 chrX 82984083 82985792 -79614138 - L1PA8A LINE L1 -1509 4637 2961 484 114 0 57 chrX 82985791 82985879 -79614051 + L1PA8A LINE L1 2865 2947 -3199 * 419 338 38 0 chrX 82986124 82986284 -79613646 + MIR SINE MIR 48 213 -49 376 310 76 48 chrX 82986300 82986697 -79613233 - LTR52 LTR ERVL -6 415 8 264 349 81 51 chrX 82986884 82987119 -79612811 + L2 LINE L2 2812 3053 -219 351 44 0 0 chrX 82987152 82987197 -79612733 + (CA)n Simple_repeat Simple_repeat 1 45 0 1748 149 79 9 chrX 82987262 82987577 -79612353 + MER1B DNA MER1_type 1 337 0 215 349 15 0 chrX 82987654 82987720 -79612210 + L2 LINE L2 3191 3257 -15 22 0 0 0 chrX 82987781 82987803 -79612127 + AT_rich Low_complexity Low_complexity 1 22 0 390 136 11 23 chrX 82988872 82988960 -79610970 - L1MA10 LINE L1 -3 6331 6245 5912 155 55 38 chrX 82988960 82989205 -79610725 + Tigger3b DNA MER2_type 3 242 -2786 1680 159 73 25 chrX 82989205 82989563 -79610367 - THE1C LTR MaLR 0 375 1 8661 149 20 43 chrX 82989563 82991177 -79608753 - THE1C-int LTR MaLR 0 1580 4 1500 152 112 37 chrX 82991180 82991529 -79608401 - THE1C LTR MaLR 0 375 1 5912 155 55 38 chrX 82991529 82992485 -79607445 + Tigger3b DNA MER2_type 243 1229 -2 2143 258 8 24 chrX 82992486 82993080 -79606850 - L1ME1 LINE L1 -76 6159 5575 421 317 16 0 chrX 82993162 82993348 -79606582 - L1ME1 LINE L1 -3457 2758 2570 1547 274 38 56 chrX 82993348 82993900 -79606030 - MLT1E2 LTR MaLR 0 626 85 558 251 147 0 chrX 82993931 82994142 -79605788 - L1ME1 LINE L1 -5154 1242 1001 2446 154 29 12 chrX 82994159 82994569 -79605361 - MSTB LTR MaLR -9 417 1 532 270 46 11 chrX 82994605 82994779 -79605151 - L1ME1 LINE L1 -5621 775 596 4570 102 67 26 chrX 82994782 82995559 -79604371 + MER4A-int LTR ERV1 5790 6598 0 508 144 89 0 chrX 82995560 82995650 -79604280 + MER4A LTR ERV1 1 98 -566 1663 159 3 72 chrX 82995650 82996021 -79603909 + MER4A LTR ERV1 261 664 0 17168 159 20 10 chrX 82996023 82997722 -79602208 - L1M1 LINE L1 -4667 2898 1167 2301 116 32 54 chrX 82997722 82998129 -79601801 - MER48 LTR ERV1 0 398 1 17168 159 20 10 chrX 82998129 82999293 -79600637 - L1M1 LINE L1 -6398 1167 16 669 273 0 37 chrX 82999369 82999557 -79600373 + L1ME LINE L1 5514 5693 -473 245 279 130 58 chrX 83001662 83001816 -79598114 + L2 LINE L2 2288 2452 -862 1225 168 9 5 chrX 83002736 83002952 -79596978 + Tigger3(Golem) DNA MER2_type 2812 3028 -1 338 306 77 6 chrX 83003249 83003419 -79596511 + L1ME4a LINE L1 5541 5722 -399 1613 24 0 39 chrX 83003561 83003825 -79596105 + L1PA2 LINE L1 5938 6155 0 1763 134 3 17 chrX 83003870 83004161 -79595769 + AluSx SINE Alu 3 289 -23 2337 82 0 16 chrX 83004184 83004490 -79595440 - AluSq SINE Alu -10 303 3 384 274 70 65 chrX 83004549 83004921 -79595009 + L1ME4a LINE L1 5726 6099 -22 2203 116 0 0 chrX 83004940 83005234 -79594696 + AluSx SINE Alu 1 294 -18 249 218 0 0 chrX 83005628 83005683 -79594247 + (TA)n Simple_repeat Simple_repeat 2 56 0 1050 215 55 14 chrX 83006651 83007029 -79592901 + MLT2B1 LTR ERVL 1 362 -158 180 0 0 0 chrX 83007029 83007049 -79592881 + (CA)n Simple_repeat Simple_repeat 2 21 0 431 62 0 16 chrX 83007049 83007113 -79592817 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 1050 215 55 14 chrX 83007113 83007148 -79592782 + MLT2B1 LTR ERVL 361 520 0 231 219 47 0 chrX 83007244 83007308 -79592622 - LTR66 LTR ERVL -171 439 373 25 0 0 0 chrX 83007340 83007365 -79592565 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chrX 83007390 83007429 -79592501 + AT_rich Low_complexity Low_complexity 1 39 0 1427 314 29 24 chrX 83007531 83008120 -79591810 + L1PA15 LINE L1 2 593 -6988 3960 304 25 45 chrX 83008164 83010049 -79589881 + L1PA15 LINE L1 1036 2884 -4697 2748 215 37 4 chrX 83010061 83010743 -79589187 + L1PA15 LINE L1 3076 3777 -3807 3002 197 31 34 chrX 83010765 83012063 -79587867 + L1PA15 LINE L1 5937 7227 -376 392 178 37 0 chrX 83012064 83012171 -79587759 + (TA)n Simple_repeat Simple_repeat 1 111 0 2304 146 5 8 chrX 83012171 83012556 -79587374 + L1PA15 LINE L1 7220 7603 0 2431 270 89 15 chrX 83013065 83014404 -79585526 - L1MEc LINE L1 -2687 3528 2131 * 5781 155 44 27 chrX 83014398 83016336 -79583594 - L1MA4A LINE L1 0 6303 4320 495 264 8 0 chrX 83016432 83016557 -79583373 + MER58B DNA MER1_type 187 312 -29 766 220 4 85 chrX 83016557 83016793 -79583137 + MLT1B LTR MaLR 1 217 -173 3545 169 19 43 chrX 83016804 83017585 -79582345 + L1MA8 LINE L1 5530 6291 0 3617 205 44 40 chrX 83017596 83018762 -79581168 + L1MB4 LINE L1 5015 6179 -1 955 199 10 6 chrX 83018916 83019130 -79580800 + L1MB4 LINE L1 5722 5944 -226 23 54 0 0 chrX 83019269 83019306 -79580624 + AT_rich Low_complexity Low_complexity 1 37 0 295 306 0 48 chrX 83020219 83020343 -79579587 - L2 LINE L2 -1 3312 3195 312 277 80 0 chrX 83020626 83020738 -79579192 - MLT1L LTR MaLR 0 615 495 394 227 0 52 chrX 83020932 83021029 -79578901 - MLT1L LTR MaLR -380 235 144 203 179 0 0 chrX 83021386 83021425 -79578505 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1923 113 4 25 chrX 83021566 83021881 -79578049 - AluSx SINE Alu 0 322 14 1596 119 54 99 chrX 83021980 83022274 -79577656 + AluSx SINE Alu 1 281 -31 415 325 60 32 chrX 83022385 83022637 -79577293 + MIR SINE MIR 2 260 -2 1523 231 71 53 chrX 83022707 83023197 -79576733 + MLT1D LTR MaLR 3 501 -4 404 297 9 18 chrX 83023324 83023435 -79576495 - L2 LINE L2 0 3272 3163 465 332 92 11 chrX 83023451 83023713 -79576217 - L2 LINE L2 -793 2521 2239 436 329 111 29 chrX 83023757 83024173 -79575757 - L2 LINE L2 -1247 2067 1618 180 230 81 69 chrX 83024205 83024292 -79575638 - L2 LINE L2 -2764 550 463 1403 260 68 32 chrX 83024380 83024823 -79575107 - MER74B LTR ERVL -75 547 89 498 314 108 5 chrX 83025033 83025237 -79574693 - MIR SINE MIR -34 228 4 280 193 0 0 chrX 83025401 83025458 -79574472 + Alu SINE Alu 243 299 -3 216 298 147 41 chrX 83025491 83025709 -79574221 + L2 LINE L2 2007 2247 -1067 9279 26 1 0 chrX 83026646 83028147 -79571783 - L1PA3 LINE L1 -376 5779 4278 3276 28 0 3 chrX 83028147 83028535 -79571395 + L1PA3 LINE L1 5764 6152 -3 2038 169 47 31 chrX 83029814 83030350 -79569580 - MLT2A2 LTR ERVL 0 554 5 40285 102 15 5 chrX 83030365 83034622 -79565308 - HERVL-A2-A2 LTR ERVL -5 5649 1321 2036 126 0 7 chrX 83034622 83034915 -79565015 + AluSx SINE Alu 5 295 -17 40285 102 15 5 chrX 83034915 83036249 -79563681 - HERVL-A2-A2 LTR ERVL -4333 1321 2 2107 179 32 28 chrX 83036250 83036799 -79563131 - MLT2A2 LTR ERVL 0 554 1 18145 221 20 33 chrX 83037071 83042840 -79557090 + L1MA1 LINE L1 1 5722 -1999 558 169 0 0 chrX 83042840 83042929 -79557001 - AluSg/x SINE Alu -18 291 203 18145 221 20 33 chrX 83042929 83044903 -79555027 + L1MA1 LINE L1 5722 7721 0 22 0 0 0 chrX 83044903 83044925 -79555005 + AT_rich Low_complexity Low_complexity 1 22 0 3522 117 2 4 chrX 83045111 83045623 -79554307 + MER9 LTR ERVK 1 511 0 4052 217 21 13 chrX 83045905 83047463 -79552467 + L1MB7 LINE L1 4616 6184 0 2241 96 3 3 chrX 83047584 83047877 -79552053 + AluSc SINE Alu 3 295 -14 206 182 23 0 chrX 83049086 83049130 -79550800 + (TAA)n Simple_repeat Simple_repeat 1 45 0 667 262 27 5 chrX 83049140 83049327 -79550603 - MIR SINE MIR 0 262 72 1925 176 0 0 chrX 83049630 83049942 -79549988 - AluSx SINE Alu 0 312 1 3605 146 48 22 chrX 83050345 83051015 -79548915 + Tigger2 DNA MER2_type 2 688 -2030 4581 257 19 21 chrX 83051026 83054213 -79545717 + L1PA15 LINE L1 2 3658 -3139 * 5052 173 16 19 chrX 83054206 83055369 -79544561 + L1PA15 LINE L1 5668 6815 -1 399 133 33 0 chrX 83055374 83055434 -79544496 + Tigger2 DNA MER2_type 683 744 -1974 1182 167 34 64 chrX 83055502 83055766 -79544164 + Tigger2 DNA MER2_type 2463 2718 0 22 35 0 0 chrX 83057299 83057328 -79542602 + AT_rich Low_complexity Low_complexity 1 29 0 2278 106 3 0 chrX 83057364 83057676 -79542254 - AluSq SINE Alu 0 313 1 21 0 0 0 chrX 83057693 83057714 -79542216 + AT_rich Low_complexity Low_complexity 1 21 0 740 155 56 6 chrX 83058126 83058287 -79541643 - L1MA4 LINE L1 -3 6297 6129 1021 164 6 1 chrX 83058287 83058483 -79541447 + L1M4 LINE L1 5446 5642 -532 535 241 13 38 chrX 83058688 83058846 -79541084 + MER87 LTR ERV1 220 373 -168 16174 186 33 70 chrX 83058857 83060246 -79539684 + L1M1 LINE L1 15 1454 -6111 2453 70 0 22 chrX 83060246 83060559 -79539371 + AluSx SINE Alu 1 306 -6 16174 186 33 70 chrX 83060559 83062264 -79537666 + L1M1 LINE L1 1454 3220 -4345 216 0 0 0 chrX 83062264 83062288 -79537642 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 16174 186 33 70 chrX 83062288 83062491 -79537439 + L1M1 LINE L1 3220 3429 -4136 1584 171 3 58 chrX 83062491 83062819 -79537111 - AluSg SINE Alu 0 310 1 16174 186 33 70 chrX 83062819 83063351 -79536579 + L1M1 LINE L1 3429 3706 -3859 1975 91 8 0 chrX 83063355 83063620 -79536310 + THE1B-int LTR MaLR 1314 1580 0 611 80 0 0 chrX 83063620 83063708 -79536222 + THE1B-int LTR MaLR 1493 1580 0 2171 134 22 27 chrX 83063708 83064074 -79535856 + THE1B LTR MaLR 1 364 0 4834 124 5 3 chrX 83064074 83064813 -79535117 + L1PB1 LINE L1 5404 6144 -7 39 68 0 0 chrX 83064949 83065023 -79534907 + AT_rich Low_complexity Low_complexity 1 74 0 324 316 21 78 chrX 83065425 83065618 -79534312 + MER5A DNA MER1_type 8 189 0 271 301 68 29 chrX 83065732 83065835 -79534095 - L3 LINE CR1 -14 1563 1457 3764 210 34 10 chrX 83065896 83067076 -79532854 - L1MB7 LINE L1 -7 6177 4968 297 320 39 19 chrX 83067084 83067240 -79532690 - L3 LINE CR1 -187 1390 1232 263 241 193 0 chrX 83067320 83067403 -79532527 - L3 LINE CR1 -576 1001 903 24 53 0 0 chrX 83067410 83067448 -79532482 + AT_rich Low_complexity Low_complexity 1 38 0 198 395 68 16 chrX 83067577 83067767 -79532163 + L2 LINE L2 2569 2768 -546 339 341 38 21 chrX 83067788 83067948 -79531982 + MIR SINE MIR 40 200 -62 1776 171 10 7 chrX 83068478 83068776 -79531154 - AluJb SINE Alu -13 299 1 1403 284 29 16 chrX 83069174 83069621 -79530309 - LTR40c LTR ERVL -12 453 1 434 309 16 8 chrX 83073036 83073159 -79526771 - L2 LINE L2 0 3272 3149 754 251 66 74 chrX 83073409 83073772 -79526158 - L1MDa LINE L1 -6164 376 17 351 0 0 0 chrX 83074498 83074537 -79525393 + (TG)n Simple_repeat Simple_repeat 2 40 0 24 32 0 0 chrX 83074556 83074587 -79525343 + AT_rich Low_complexity Low_complexity 1 31 0 196 290 32 32 chrX 83075118 83075180 -79524750 - MIR SINE MIR -109 99 38 312 83 0 0 chrX 83075302 83075350 -79524580 + (CA)n Simple_repeat Simple_repeat 1 48 0 458 350 200 29 chrX 83076091 83076699 -79523231 - L2 LINE L2 -1388 1926 1423 2040 119 0 0 chrX 83076699 83076977 -79522953 + AluSx SINE Alu 1 278 -34 879 94 0 0 chrX 83076982 83077109 -79522821 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 458 350 200 29 chrX 83077109 83077563 -79522367 - L2 LINE L2 -1894 1420 675 1913 153 60 40 chrX 83077595 83077791 -79522139 + MLT1B LTR MaLR 1 191 -199 1627 176 118 39 chrX 83077791 83078223 -79521707 - MER31B LTR ERV1 0 466 1 1913 153 60 40 chrX 83078223 83078406 -79521524 + MLT1B LTR MaLR 191 388 -2 1949 211 14 19 chrX 83078514 83078997 -79520933 + L1MA7 LINE L1 5794 6274 -17 31 0 0 0 chrX 83078997 83079028 -79520902 + AT_rich Low_complexity Low_complexity 1 31 0 180 179 0 0 chrX 83079098 83079137 -79520793 + (TAA)n Simple_repeat Simple_repeat 3 41 0 635 258 127 44 chrX 83079151 83079380 -79520550 - MIR SINE MIR -14 248 1 2299 121 39 14 chrX 83079731 83080086 -79519844 + THE1B LTR MaLR 1 364 0 11509 102 5 0 chrX 83080088 83081659 -79518271 + THE1B-int LTR MaLR 3 1580 0 2050 160 29 14 chrX 83081659 83082003 -79517927 + THE1B LTR MaLR 1 349 -15 22 70 0 0 chrX 83083538 83083581 -79516349 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chrX 83084893 83084930 -79515000 + AT_rich Low_complexity Low_complexity 1 37 0 2113 231 67 76 chrX 83085248 83085975 -79513955 + MER50 LTR ERV1 14 734 0 343 336 101 0 chrX 83086130 83086249 -79513681 + L2 LINE L2 3109 3239 -33 216 361 91 19 chrX 83086742 83086950 -79512980 - L2 LINE L2 -219 3053 2831 5149 117 151 44 chrX 83087048 83088045 -79511885 - MER52C LTR ERV1 0 1278 176 226 302 86 9 chrX 83088157 83088273 -79511657 + MIR SINE MIR 128 252 -10 2081 122 0 7 chrX 83089129 83089423 -79510507 + AluSx SINE Alu 1 292 -20 22 35 0 0 chrX 83089764 83089793 -79510137 + AT_rich Low_complexity Low_complexity 1 29 0 4491 134 39 44 chrX 83089924 83090722 -79509208 + LTR25 LTR ERV1 1 794 0 2253 112 26 9 chrX 83091113 83091462 -79508468 - THE1A LTR MaLR 0 355 1 1060 135 16 11 chrX 83091465 83091650 -79508280 - MSTA-int LTR MaLR -1465 186 1 1810 158 127 21 chrX 83091650 83092037 -79507893 - MSTA LTR MaLR 0 428 1 502 285 42 14 chrX 83092062 83092206 -79507724 - MLT2D LTR ERVL -51 363 216 476 242 24 0 chrX 83092241 83092365 -79507565 + L1MA9 LINE L1 6135 6261 -51 423 143 13 0 chrX 83092398 83092475 -79507455 + MER116 DNA Mariner 1 78 -2 281 228 13 13 chrX 83093266 83093345 -79506585 - HsTC2 DNA Tc2 -1819 79 1 10679 40 0 1 chrX 83093489 83095555 -79504375 - L1PA4 LINE L1 -3 6152 4088 2039 151 0 0 chrX 83095615 83095914 -79504016 + AluSx SINE Alu 1 299 -13 5438 183 32 14 chrX 83096311 83097194 -79502736 - L1PA16 LINE L1 -9 6157 5292 2401 113 34 6 chrX 83097194 83097548 -79502382 - THE1B LTR MaLR 0 364 1 5438 183 32 14 chrX 83097548 83098098 -79501832 - L1PA16 LINE L1 -874 5292 4754 353 0 34 34 chrX 83098098 83098157 -79501773 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5438 183 32 14 chrX 83098157 83098825 -79501105 - L1PA16 LINE L1 -1412 4754 4018 1888 120 33 0 chrX 83098821 83099120 -79500810 - L1PB1 LINE L1 -81 6070 5762 * 900 109 0 0 chrX 83099115 83099243 -79500687 + L1PB1 LINE L1 5635 5762 -389 * 248 289 171 13 chrX 83099293 83099445 -79500485 - MLT1F1 LTR MaLR -7 560 385 1230 185 28 37 chrX 83099536 83099860 -79500070 + Charlie1 DNA MER1_type 1958 2278 -483 7938 224 19 11 chrX 83099870 83101812 -79498118 + L1P LINE L1 3388 5343 -803 1406 110 5 5 chrX 83101812 83102012 -79497918 + AluSg/x SINE Alu 91 290 -22 854 202 37 67 chrX 83102019 83102395 -79497535 + Charlie1 DNA MER1_type 2349 2713 -48 4499 205 45 18 chrX 83102403 83103680 -79496250 - L1MB3 LINE L1 0 6183 4846 2108 147 11 6 chrX 83103680 83104035 -79495895 + L1PA13 LINE L1 5793 6149 -14 4499 205 45 18 chrX 83104035 83104145 -79495785 - L1MB3 LINE L1 -1337 4846 4740 1716 128 4 0 chrX 83104523 83104781 -79495149 - L1PA8 LINE L1 -15 6157 5899 338 175 49 14 chrX 83104828 83104942 -79494988 + MER34 LTR ERV1 435 537 -5 2044 222 32 25 chrX 83104950 83105503 -79494427 - L1MB3 LINE L1 -1402 4744 4188 1100 248 37 25 chrX 83105687 83106010 -79493920 - LTR43 LTR ERV1 -142 460 134 234 0 0 0 chrX 83106096 83106122 -79493808 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 352 130 29 14 chrX 83106481 83106550 -79493380 - LTR60 LTR ERV1 -516 70 1 392 233 11 0 chrX 83106550 83106640 -79493290 - L1MB3 LINE L1 -1954 4192 4102 24 77 0 0 chrX 83107716 83107768 -79492162 + AT_rich Low_complexity Low_complexity 1 52 0 556 238 53 31 chrX 83108175 83108402 -79491528 + LTR37B LTR ERV1 233 464 -4 23 0 0 0 chrX 83109459 83109482 -79490448 + AT_rich Low_complexity Low_complexity 1 23 0 661 207 40 6 chrX 83110056 83110230 -79489700 + MER53 DNA DNA 4 183 -6 558 199 45 28 chrX 83110072 83110248 -79489682 - MER53 DNA DNA -10 179 1 * 371 326 97 56 chrX 83112225 83112782 -79487148 + L1MC4a LINE L1 4874 5449 -672 531 281 101 14 chrX 83112788 83113005 -79486925 + MIR SINE MIR 27 262 0 510 329 52 62 chrX 83113037 83113502 -79486428 + L1MC4a LINE L1 5566 6025 -96 273 202 192 58 chrX 83113563 83113637 -79486293 + L2 LINE L2 3195 3288 -25 2407 88 0 0 chrX 83113637 83113934 -79485996 - AluSx SINE Alu -13 299 3 273 202 192 58 chrX 83113934 83113963 -79485967 + L2 LINE L2 3288 3312 -1 378 0 0 0 chrX 83114404 83114446 -79485484 + (TG)n Simple_repeat Simple_repeat 1 42 0 727 258 0 0 chrX 83115049 83115208 -79484722 + MIR SINE MIR 2 160 -102 1760 332 66 31 chrX 83116116 83117226 -79482704 + L2 LINE L2 2174 3313 0 13453 179 33 9 chrX 83117868 83119369 -79480561 - L1M1 LINE L1 -743 6822 5358 1994 138 13 56 chrX 83119369 83119761 -79480169 + THE1C LTR MaLR 1 375 0 13453 179 33 9 chrX 83119761 83120070 -79479860 - L1M1 LINE L1 -2207 5358 5058 204 40 0 0 chrX 83120070 83120095 -79479835 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 13453 179 33 9 chrX 83120095 83122963 -79476967 - L1M1 LINE L1 -2507 5058 2190 653 179 107 97 chrX 83122934 83123224 -79476706 - L1MCa LINE L1 -4079 2347 2055 * 1087 199 83 21 chrX 83123234 83123353 -79476577 - L1MCa LINE L1 -4423 2003 1893 315 0 0 0 chrX 83123353 83123388 -79476542 + (TA)n Simple_repeat Simple_repeat 2 36 0 1087 199 83 21 chrX 83123388 83123833 -79476097 - L1MCa LINE L1 -4533 1893 1308 238 64 0 43 chrX 83123837 83123884 -79476046 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 44144 41 3 1 chrX 83123884 83130006 -79469924 - L1PA4 LINE L1 -24 6131 3 2568 202 47 180 chrX 83130023 83130254 -79469676 - L1MCa LINE L1 -5117 1309 1049 1431 215 7 17 chrX 83130254 83130542 -79469388 + AluJo SINE Alu 2 286 -26 2568 202 47 180 chrX 83130542 83131818 -79468112 - L1MCa LINE L1 -5377 1049 2 23 68 0 0 chrX 83131846 83131890 -79468040 + AT_rich Low_complexity Low_complexity 1 44 0 317 232 128 62 chrX 83132090 83132301 -79467629 - L1M4 LINE L1 -2756 3390 3166 24 32 0 0 chrX 83132425 83132456 -79467474 + AT_rich Low_complexity Low_complexity 1 31 0 1692 150 73 3 chrX 83132507 83132793 -79467137 - AluSx SINE Alu -6 306 1 423 379 10 0 chrX 83132800 83133003 -79466927 - L1M4 LINE L1 -3010 3136 2932 24 32 0 0 chrX 83133364 83133395 -79466535 + AT_rich Low_complexity Low_complexity 1 31 0 742 218 7 0 chrX 83133452 83133594 -79466336 + L1PA13 LINE L1 1436 1578 -5209 1921 136 7 20 chrX 83134407 83134708 -79465222 + AluSx SINE Alu 1 297 -15 2028 111 0 7 chrX 83134936 83135216 -79464714 - AluSq SINE Alu -22 291 14 251 288 0 0 chrX 83135230 83135289 -79464641 + MIR SINE MIR 57 115 -93 3323 197 45 3 chrX 83135601 83136199 -79463731 + L1PA13 LINE L1 3 625 -6162 * 15218 192 33 9 chrX 83136185 83137461 -79462469 + L1PA13 LINE L1 2411 3654 -3160 1952 161 0 3 chrX 83137461 83137765 -79462165 + AluSx SINE Alu 1 303 -9 15218 192 33 9 chrX 83137765 83140784 -79459146 + L1PA13 LINE L1 3654 6810 -4 308 148 0 0 chrX 83141545 83141599 -79458331 - MADE1 DNA Mariner -26 54 1 392 370 50 35 chrX 83143066 83143528 -79456402 + L1M2c LINE L1 1539 2007 -5161 424 299 236 24 chrX 83143719 83143973 -79455957 + MLT1E LTR MaLR 225 532 -61 8131 203 13 11 chrX 83143977 83144255 -79455675 + L1PBa LINE L1 69 345 -6518 2166 125 3 3 chrX 83144255 83144560 -79455370 + AluSx SINE Alu 1 305 -7 8131 203 13 11 chrX 83144560 83146567 -79453363 + L1PBa LINE L1 345 1644 -5219 6613 76 9 67 chrX 83146605 83147619 -79452311 + SVA Other Other 432 1386 0 6625 144 55 11 chrX 83147643 83149597 -79450333 + L1PB2 LINE L1 750 2786 -3417 3080 140 4 6 chrX 83149607 83150094 -79449836 - LTR15 LTR ERV1 -7 486 1 10120 201 14 5 chrX 83150097 83153486 -79446444 + L1PB2 LINE L1 2789 6205 -3 1298 256 83 12 chrX 83153512 83154166 -79445764 + L1M2c LINE L1 2017 2694 -4474 * 1398 227 59 28 chrX 83154164 83154552 -79445378 - L1MA8 LINE L1 -139 6152 5753 1113 161 58 14 chrX 83154537 83154760 -79445170 - L1MA7 LINE L1 -430 5861 5629 * 3630 120 57 2 chrX 83154757 83155355 -79444575 + L1MA1 LINE L1 5518 6148 -154 306 100 0 0 chrX 83155357 83155397 -79444533 - MER11A LTR ERVK -2 1264 1225 1018 72 62 0 chrX 83155400 83155578 -79444352 - MER11A LTR ERVK -982 284 2 968 128 13 0 chrX 83155578 83155734 -79444196 + L1MA1 LINE L1 6142 6299 -3 11608 200 37 4 chrX 83155756 83158026 -79441904 - L1M1 LINE L1 -5205 2360 16 3715 259 27 11 chrX 83158026 83159381 -79440549 - L1 LINE L1 -2875 4690 3316 2316 62 0 65 chrX 83159408 83159730 -79440200 + AluSp SINE Alu 1 301 -12 2525 61 0 3 chrX 83159793 83160104 -79439826 - AluY SINE Alu -1 310 1 226 348 77 28 chrX 83160309 83160490 -79439440 - L1 LINE L1 -5262 2234 2045 1183 330 20 28 chrX 83160509 83161006 -79438924 - L1 LINE L1 -5788 1708 1216 26 30 0 0 chrX 83161259 83161292 -79438638 + AT_rich Low_complexity Low_complexity 1 33 0 233 399 25 6 chrX 83163868 83164026 -79435904 - L2 LINE L2 -556 2758 2598 22 35 0 0 chrX 83165010 83165039 -79434891 + AT_rich Low_complexity Low_complexity 1 29 0 831 274 68 0 chrX 83165672 83165964 -79433966 - Charlie7 DNA MER1_type -1891 721 410 185 242 0 15 chrX 83165968 83165985 -79433945 + (CA)n Simple_repeat Simple_repeat 2 18 -48 2790 220 21 17 chrX 83165985 83166635 -79433295 + MER82 DNA MER2_type 1 653 0 185 242 0 15 chrX 83166635 83166683 -79433247 + (CA)n Simple_repeat Simple_repeat 18 66 0 211 195 0 0 chrX 83167845 83167886 -79432044 + (TG)n Simple_repeat Simple_repeat 2 42 0 373 316 70 27 chrX 83168038 83168225 -79431705 + MIR SINE MIR 20 214 -48 2199 100 3 34 chrX 83168276 83168596 -79431334 + AluSx SINE Alu 1 310 -2 1932 100 22 0 chrX 83169238 83169507 -79430423 - AluSg SINE Alu -35 275 1 348 235 0 0 chrX 83169527 83169608 -79430322 - L1MB8 LINE L1 -28 6150 6070 418 73 0 0 chrX 83170502 83170557 -79429373 - MADE1 DNA Mariner -25 55 1 32 0 0 0 chrX 83170594 83170626 -79429304 + AT_rich Low_complexity Low_complexity 1 32 0 1834 140 11 0 chrX 83172231 83172539 -79427391 + AluSx SINE Alu 1 311 0 24 0 0 0 chrX 83173301 83173325 -79426605 + AT_rich Low_complexity Low_complexity 1 24 0 283 244 167 0 chrX 83173343 83173433 -79426497 - MER20 DNA MER1_type 0 219 115 343 299 149 23 chrX 83173516 83173690 -79426240 - L2 LINE L2 -2 3311 3116 741 173 0 30 chrX 83174093 83174226 -79425704 - AluSq/x SINE Alu -183 129 1 23 0 0 0 chrX 83174595 83174618 -79425312 + AT_rich Low_complexity Low_complexity 1 23 0 12772 145 24 64 chrX 83174718 83177230 -79422700 + Tigger1 DNA MER2_type 3 2414 -4 1322 221 33 52 chrX 83177301 83177667 -79422263 + MLT1A2 LTR MaLR 11 369 -5 5109 167 16 16 chrX 83178278 83178800 -79421130 - L1PA16 LINE L1 -2 6164 5643 1747 162 151 16 chrX 83178800 83179177 -79420753 + MSTA LTR MaLR 1 428 0 5109 167 16 16 chrX 83179177 83179842 -79420088 - L1PA16 LINE L1 -523 5643 4980 642 127 8 59 chrX 83180165 83180283 -79419647 + MLT1B LTR MaLR 1 112 -278 8036 25 1 0 chrX 83180283 83181235 -79418695 - L1PA3 LINE L1 -1079 5067 4115 7673 25 0 0 chrX 83181235 83182313 -79417617 + L1PA3 LINE L1 5078 6155 0 1171 197 38 35 chrX 83182313 83182602 -79417328 + MLT1B LTR MaLR 101 390 0 459 395 29 23 chrX 83183043 83183352 -79416578 - L2 LINE L2 -175 3138 2828 231 249 287 39 chrX 83183656 83183837 -79416093 - L3 LINE CR1 -405 1172 947 222 364 10 0 chrX 83183841 83183940 -79415990 - MIR3 SINE MIR -4 204 105 451 330 84 24 chrX 83184025 83184322 -79415608 - L3 LINE CR1 -767 810 496 376 291 77 50 chrX 83184785 83184967 -79414963 + MIR SINE MIR 18 204 -58 21 0 0 0 chrX 83184967 83184988 -79414942 + AT_rich Low_complexity Low_complexity 1 21 0 1541 52 0 0 chrX 83184995 83185188 -79414742 - L1PA3 LINE L1 -3 6152 5960 2095 24 12 0 chrX 83185188 83185429 -79414501 + L1P1 LINE L1 5560 5806 -349 2503 260 88 45 chrX 83185429 83186181 -79413749 - L1ME LINE L1 -4131 2130 1412 276 100 0 0 chrX 83186181 83186221 -79413709 + (CA)n Simple_repeat Simple_repeat 1 40 0 2503 260 88 45 chrX 83186221 83186672 -79413258 - L1ME LINE L1 -4849 1412 982 2680 26 0 3 chrX 83186672 83186982 -79412948 - AluY SINE Alu -2 309 1 2503 260 88 45 chrX 83186982 83187761 -79412169 - L1ME LINE L1 -5279 982 6 782 210 181 8 chrX 83188213 83188451 -79411479 - L1MD1 LINE L1 0 6242 5964 180 0 0 0 chrX 83188453 83188473 -79411457 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 351 113 0 0 chrX 83188472 83188525 -79411405 + (TG)n Simple_repeat Simple_repeat 2 54 0 183 80 0 0 chrX 83188549 83188574 -79411356 + (GA)n Simple_repeat Simple_repeat 2 26 0 1810 151 0 11 chrX 83188574 83188859 -79411071 - AluSx SINE Alu -30 282 1 314 150 182 1 chrX 83188898 83189009 -79410921 + L1P LINE L1 5215 5340 -806 * 2942 217 36 9 chrX 83189006 83189369 -79410561 - L1MD1 LINE L1 -410 5949 5597 1984 107 0 67 chrX 83189369 83189696 -79410234 + AluSg SINE Alu 1 305 -5 2942 217 36 9 chrX 83189696 83190180 -79409750 - L1MD1 LINE L1 -762 5597 5082 1527 260 33 18 chrX 83190264 83190752 -79409178 - L1MD1 LINE L1 -1082 5064 4570 317 194 25 13 chrX 83190765 83190929 -79409001 + (TA)n Simple_repeat Simple_repeat 1 166 0 692 326 52 26 chrX 83191094 83191667 -79408263 - L1ME3A LINE L1 -263 5907 5320 558 186 0 0 chrX 83192695 83192797 -79407133 + MER72 LTR ERV1 23 124 -598 487 191 0 0 chrX 83192798 83192887 -79407043 - L1P LINE L1 -2309 3837 3749 272 257 198 0 chrX 83193498 83193599 -79406331 + L2 LINE L2 3193 3313 0 1149 237 69 12 chrX 83194038 83194460 -79405470 - Charlie2 DNA MER1_type -5 2857 2412 655 215 20 20 chrX 83194487 83194636 -79405294 - Charlie2 DNA MER1_type -685 2177 2029 2927 60 21 8 chrX 83195240 83195621 -79404309 + MLT2A1 LTR ERVL 1 386 -58 261 0 0 0 chrX 83195621 83195650 -79404280 + (TA)n Simple_repeat Simple_repeat 1 29 0 274 216 72 6 chrX 83195662 83195829 -79404101 + (TA)n Simple_repeat Simple_repeat 2 179 0 * 291 204 11 65 chrX 83195765 83195951 -79403979 + (TTATA)n Simple_repeat Simple_repeat 2 177 0 259 82 163 0 chrX 83195976 83196025 -79403905 + MLT2A1 LTR ERVL 464 520 0 248 0 31 0 chrX 83196657 83196689 -79403241 + (CA)n Simple_repeat Simple_repeat 2 34 0 1424 212 101 48 chrX 83196689 83197123 -79402807 - MLT2B1 LTR ERVL -63 457 1 451 338 48 0 chrX 83197270 83197415 -79402515 - MIR3 SINE MIR -48 160 9 695 268 135 40 chrX 83202094 83202419 -79397511 - L2 LINE L2 -4 3309 2954 283 331 203 0 chrX 83202914 83203062 -79396868 - L2 LINE L2 -313 3000 2823 259 210 97 0 chrX 83203093 83203155 -79396775 - MIR SINE MIR 0 262 195 22 35 0 0 chrX 83203666 83203695 -79396235 + AT_rich Low_complexity Low_complexity 1 29 0 213 121 0 0 chrX 83204044 83204077 -79395853 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 3828 181 72 52 chrX 83204197 83204417 -79395513 + L1MC3 LINE L1 6808 7022 -763 2219 93 0 0 chrX 83204417 83204744 -79395186 + AluSx SINE Alu 1 312 0 3828 181 72 52 chrX 83204744 83204972 -79394958 + L1MC3 LINE L1 7022 7244 -541 632 186 62 0 chrX 83204972 83205133 -79394797 + L1MA7 LINE L1 6114 6284 -7 3828 181 72 52 chrX 83205133 83205604 -79394326 + L1MC3 LINE L1 7244 7746 -39 22 0 0 0 chrX 83206129 83206151 -79393779 + AT_rich Low_complexity Low_complexity 1 22 0 203 308 75 68 chrX 83207037 83207170 -79392760 - L2 LINE L2 -1 3312 3179 626 298 6 11 chrX 83208001 83208182 -79391748 + L1M2c LINE L1 835 1014 -6154 656 215 13 40 chrX 83208487 83208697 -79391233 + L1M2c LINE L1 1875 2094 -5004 3365 232 26 20 chrX 83208777 83209171 -79390759 + L1M2c LINE L1 2056 2446 -4722 2210 96 26 3 chrX 83209171 83209473 -79390457 + AluSc SINE Alu 1 309 0 3365 232 26 20 chrX 83209473 83210014 -79389916 + L1M2c LINE L1 2446 2996 -4172 2157 27 0 0 chrX 83210746 83211008 -79388922 - L1P LINE L1 -880 5266 5005 7599 21 9 0 chrX 83211008 83212194 -79387736 - L1PA2 LINE L1 -2 6153 4963 5292 19 0 0 chrX 83212194 83212810 -79387120 + L1P LINE L1 4116 4731 -1415 * 6306 25 0 0 chrX 83212805 83213555 -79386375 - L1P LINE L1 -1128 5018 4269 7691 22 0 0 chrX 83213555 83214451 -79385479 + L1PA3 LINE L1 5257 6152 -3 363 373 59 18 chrX 83214953 83215122 -79384808 - MER5A DNA MER1_type -7 182 7 245 325 0 24 chrX 83215935 83216018 -79383912 - MIR SINE MIR -95 113 33 2480 138 33 17 chrX 83216419 83216840 -79383090 + MSTA LTR MaLR 1 428 0 24 0 0 0 chrX 83218113 83218137 -79381793 + AT_rich Low_complexity Low_complexity 1 24 0 257 250 0 0 chrX 83218227 83218291 -79381639 + (TA)n Simple_repeat Simple_repeat 1 64 0 24 85 0 0 chrX 83219682 83219741 -79380189 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chrX 83220065 83220086 -79379844 + AT_rich Low_complexity Low_complexity 1 21 0 5823 155 61 35 chrX 83220577 83221766 -79378164 - Tigger3b DNA MER2_type -1 1230 10 1818 131 39 55 chrX 83221766 83221941 -79377989 + THE1C LTR MaLR 1 177 -198 2175 93 3 26 chrX 83221941 83222251 -79377679 + AluSc SINE Alu 1 303 -6 1818 131 39 55 chrX 83222251 83222456 -79377474 + THE1C LTR MaLR 177 375 0 4068 179 32 3 chrX 83222460 83223216 -79376714 + THE1C-int LTR MaLR 5 782 -869 2241 122 2 92 chrX 83223192 83223618 -79376312 + THE1C-int LTR MaLR 1193 1580 0 * 1487 183 72 33 chrX 83223618 83223979 -79375951 + THE1C LTR MaLR 1 375 0 6566 220 70 11 chrX 83224024 83225992 -79373938 + L1M1 LINE L1 15 2440 -5125 1777 165 47 22 chrX 83225992 83226356 -79373574 + THE1C LTR MaLR 1 373 -2 8661 148 74 3 chrX 83226358 83226782 -79373148 + THE1C-int LTR MaLR 1 393 -1187 254 49 0 24 chrX 83226782 83226823 -79373107 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8661 148 74 3 chrX 83226823 83227873 -79372057 + THE1C-int LTR MaLR 393 1580 0 1687 191 44 19 chrX 83227873 83228239 -79371691 + THE1C LTR MaLR 1 375 0 180 0 0 0 chrX 83228250 83228270 -79371660 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2141 98 4 0 chrX 83228279 83228581 -79371349 + AluY SINE Alu 3 305 0 9569 209 25 34 chrX 83228581 83232291 -79367639 + L1P5 LINE L1 2463 6112 -1458 450 53 0 0 chrX 83232291 83232348 -79367582 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 9569 209 25 34 chrX 83232348 83233425 -79366505 + L1P5 LINE L1 6112 7198 -372 180 0 0 0 chrX 83233430 83233450 -79366480 + (TA)n Simple_repeat Simple_repeat 1 20 0 2473 124 10 0 chrX 83233450 83233845 -79366085 + L1MA1 LINE L1 5904 6302 0 45 19 0 0 chrX 83234099 83234151 -79365779 + AT_rich Low_complexity Low_complexity 1 52 0 19844 29 2 0 chrX 83234501 83236911 -79363019 - L1P LINE L1 -1036 5110 2696 4230 26 0 4 chrX 83236916 83237456 -79362474 + L1PA3 LINE L1 5650 6187 0 823 252 30 17 chrX 83238923 83239153 -79360777 + MIR SINE MIR 30 262 0 539 120 11 0 chrX 83239260 83239352 -79360578 + AluSg/x SINE Alu 217 309 -3 1043 243 96 6 chrX 83239736 83240049 -79359881 - MER58B DNA MER1_type 0 341 1 222 305 152 12 chrX 83240397 83240561 -79359369 - L2 LINE L2 0 3313 3127 2201 197 43 10 chrX 83241179 83241672 -79358258 - L1MB1 LINE L1 0 6168 5660 823 196 0 0 chrX 83241672 83241835 -79358095 + L1 LINE L1 4926 5088 -1058 14090 185 74 59 chrX 83241847 83245169 -79354761 + L1PA16 LINE L1 22 3393 -4172 3393 256 50 37 chrX 83245174 83246182 -79353748 + L1PA16 LINE L1 3654 4648 -2917 1587 145 8 0 chrX 83246182 83246423 -79353507 + AluSx SINE Alu 1 243 -69 3393 256 50 37 chrX 83246423 83246668 -79353262 + L1PA16 LINE L1 4648 4888 -2677 1140 126 0 0 chrX 83246668 83246835 -79353095 + L1PA8A LINE L1 5962 6128 -3 3393 256 50 37 chrX 83246835 83247075 -79352855 + L1PA16 LINE L1 4888 5167 -2398 2000 154 27 0 chrX 83247093 83247430 -79352500 - MER47A DNA MER2_type -20 346 1 893 225 67 46 chrX 83247430 83247598 -79352332 + L1PA16 LINE L1 5165 5343 -2222 1537 83 14 0 chrX 83247598 83247814 -79352116 + L1PA13 LINE L1 5941 6159 -4 893 225 67 46 chrX 83247814 83247929 -79352001 + L1PA16 LINE L1 5343 5454 -2111 2733 237 33 15 chrX 83248036 83248706 -79351224 + L1PA16 LINE L1 6895 7576 -9 1021 190 0 5 chrX 83248745 83248940 -79350990 + L1MB4 LINE L1 5823 6016 -164 4437 195 31 56 chrX 83248956 83250739 -79349191 + L1MB5 LINE L1 5888 7585 -8 199 365 107 15 chrX 83251328 83251525 -79348405 - L2 LINE L2 -427 2887 2673 349 0 0 0 chrX 83253498 83253543 -79346387 + L1PA2 LINE L1 6110 6154 -1 309 279 0 47 chrX 83253931 83254070 -79345860 - MER5B DNA MER1_type -22 167 38 246 287 29 52 chrX 83254079 83254253 -79345677 - L2 LINE L2 -55 3258 3089 25 31 0 0 chrX 83254872 83254904 -79345026 + AT_rich Low_complexity Low_complexity 1 32 0 331 179 0 0 chrX 83255240 83255307 -79344623 - L1MB8 LINE L1 0 6178 6112 404 322 114 12 chrX 83255632 83255887 -79344043 + L3 LINE CR1 724 1004 -573 2205 125 0 21 chrX 83255898 83256226 -79343704 + MER1B DNA MER1_type 19 339 0 359 326 35 35 chrX 83256230 83256402 -79343528 + L3 LINE CR1 1024 1195 -382 508 169 154 7 chrX 83257119 83257255 -79342675 + L1MA5 LINE L1 6139 6294 -6 24 67 0 0 chrX 83257645 83257690 -79342240 + AT_rich Low_complexity Low_complexity 1 45 0 3264 131 14 0 chrX 83257946 83258451 -79341479 + MER75 DNA T2_type 2 513 -1 208 139 0 0 chrX 83258975 83259011 -79340919 + (TTAAA)n Simple_repeat Simple_repeat 2 37 0 831 382 26 7 chrX 83259164 83259602 -79340328 + L1 LINE L1 1 529 -5752 312 231 64 0 chrX 83259598 83259676 -79340254 + L1 LINE L1 961 1043 -5238 * 2000 282 64 23 chrX 83260055 83261611 -79338319 + L1 LINE L1 1231 2857 -3493 3210 256 29 38 chrX 83261611 83262890 -79337040 + L1PA12 LINE L1 805 2843 -4741 13374 191 36 56 chrX 83262896 83263554 -79336376 + L1MA1 LINE L1 60 729 -6992 346 235 0 0 chrX 83263554 83263635 -79336295 - LTR30 LTR ERV1 -98 624 544 13374 191 36 56 chrX 83263635 83263987 -79335943 + L1MA1 LINE L1 729 1086 -6635 250 231 0 0 chrX 83263987 83264039 -79335891 - LTR30 LTR ERV1 -670 52 1 13374 191 36 56 chrX 83264039 83270485 -79329445 + L1MA1 LINE L1 1086 7485 -236 2289 85 0 26 chrX 83270485 83270792 -79329138 + AluSp SINE Alu 2 300 -13 13374 191 36 56 chrX 83270792 83271025 -79328905 + L1MA1 LINE L1 7485 7721 0 1667 262 19 2 chrX 83271048 83271513 -79328417 + L1 LINE L1 4660 5132 -1218 * 3108 133 52 62 chrX 83271511 83272079 -79327851 - L1MA5 LINE L1 -408 5892 5320 710 158 0 22 chrX 83272079 83272218 -79327712 - L1PB4 LINE L1 -2 6154 6019 3108 133 52 62 chrX 83272218 83272441 -79327489 - L1MA5 LINE L1 -980 5320 5096 5238 167 11 13 chrX 83272452 83273679 -79326251 - L1MA3 LINE L1 0 6305 5127 2044 255 37 38 chrX 83273666 83274458 -79325472 - L1M4c LINE L1 -4729 1655 865 * 1704 32 0 9 chrX 83275756 83275974 -79323956 - L1PA4 LINE L1 0 6155 5940 2682 145 14 2 chrX 83276600 83277021 -79322909 + MSTA LTR MaLR 1 426 -2 202 216 0 0 chrX 83277202 83277239 -79322691 + L2 LINE L2 3236 3272 0 23 0 0 0 chrX 83277793 83277816 -79322114 + AT_rich Low_complexity Low_complexity 1 23 0 351 209 162 61 chrX 83277849 83277997 -79321933 + MIR SINE MIR 100 262 0 299 193 0 18 chrX 83278520 83278577 -79321353 + L2 LINE L2 3258 3313 0 43 0 0 0 chrX 83279798 83279841 -79320089 + AT_rich Low_complexity Low_complexity 1 43 0 1983 167 46 58 chrX 83280748 83280942 -79318988 + MSTB LTR MaLR 1 196 -230 2365 47 17 3 chrX 83280942 83281241 -79318689 + AluY SINE Alu 1 303 -8 1983 167 46 58 chrX 83281241 83281477 -79318453 + MSTB LTR MaLR 196 426 0 234 213 0 0 chrX 83281630 83281677 -79318253 + L1MA7 LINE L1 6019 6065 -226 230 75 132 38 chrX 83281701 83281754 -79318176 + THE1B LTR MaLR 1 58 -306 3640 174 36 23 chrX 83281790 83282490 -79317440 - MER50 LTR ERV1 -23 711 3 346 268 134 0 chrX 83282591 83282688 -79317242 + Tigger3(Golem) DNA MER2_type 2 111 -2918 * 3048 146 46 86 chrX 83282676 83283459 -79316471 + Tigger3(Golem) DNA MER2_type 2278 3029 0 204 226 0 19 chrX 83283459 83283512 -79316418 + (TATG)n Simple_repeat Simple_repeat 3 54 0 8111 188 32 36 chrX 83284292 83287072 -79312858 - L1MA6 LINE L1 0 6300 3535 1388 217 70 7 chrX 83287069 83287484 -79312446 + L1MA6 LINE L1 3091 3531 -2615 * 1580 309 129 12 chrX 83287820 83288510 -79311420 + L2 LINE L2 598 1368 -1946 1255 286 206 14 chrX 83288517 83289215 -79310715 + L2 LINE L2 2108 2939 -375 1829 179 28 105 chrX 83289248 83289504 -79310426 - MSTB LTR MaLR -2 424 217 7234 45 0 3 chrX 83289504 83290570 -79309360 - L1PA5 LINE L1 -6 6148 5082 1829 179 28 105 chrX 83290570 83290772 -79309158 - MSTB LTR MaLR -209 217 1 755 262 117 29 chrX 83290774 83291083 -79308847 + L2 LINE L2 2978 3313 0 30 27 0 0 chrX 83291325 83291362 -79308568 + AT_rich Low_complexity Low_complexity 1 37 0 1985 142 0 17 chrX 83291528 83291830 -79308100 + AluSx SINE Alu 1 297 -15 22 35 0 0 chrX 83291839 83291868 -79308062 + AT_rich Low_complexity Low_complexity 1 29 0 5695 160 75 11 chrX 83292129 83292396 -79307534 + Tigger3b DNA MER2_type 1 249 -2779 333 0 0 0 chrX 83292396 83292433 -79307497 + (CTATA)n Simple_repeat Simple_repeat 3 39 0 5695 160 75 11 chrX 83292433 83293322 -79306608 + Tigger3b DNA MER2_type 249 1231 0 340 87 2 0 chrX 83293460 83293511 -79306419 + Alu SINE Alu 1 45 -256 21 36 0 0 chrX 83294550 83294578 -79305352 + AT_rich Low_complexity Low_complexity 1 28 0 268 262 0 12 chrX 83295357 83295441 -79304489 + (CTA)n Simple_repeat Simple_repeat 3 85 0 198 325 104 0 chrX 83295443 83295520 -79304410 - MIR SINE MIR -128 134 50 634 282 29 8 chrX 83295902 83296147 -79303783 - Charlie2 DNA MER1_type -1 2861 2612 2427 209 42 5 chrX 83296154 83296724 -79303206 + L1MB7 LINE L1 5578 6168 -16 529 311 70 19 chrX 83296770 83297027 -79302903 - Charlie2 DNA MER1_type -2590 272 3 511 168 0 0 chrX 83298265 83298366 -79301564 - L1MA9 LINE L1 0 6312 6212 1849 95 0 0 chrX 83299292 83299535 -79300395 - AluSg SINE Alu -67 243 1 320 226 0 0 chrX 83300689 83300751 -79299179 + MLT2B1 LTR ERVL 110 171 -349 * 422 186 10 44 chrX 83300730 83300846 -79299084 - MLT2B2 LTR ERVL -303 111 5 32 0 0 0 chrX 83302204 83302236 -79297694 + AT_rich Low_complexity Low_complexity 1 32 0 2362 98 0 0 chrX 83304016 83304323 -79295607 - AluSc SINE Alu 0 309 3 440 307 29 0 chrX 83304668 83304808 -79295122 + MER5A DNA MER1_type 46 189 0 1249 177 5 5 chrX 83306044 83306264 -79293666 - AluJb SINE Alu -92 220 1 3371 116 46 97 chrX 83306820 83307520 -79292410 - MER4A LTR ERV1 0 664 1 322 285 45 84 chrX 83307542 83307851 -79292079 - LTR36 LTR ERV1 0 611 315 212 169 17 34 chrX 83308550 83308609 -79291321 + T-rich Low_complexity Low_complexity 1 58 0 201 147 0 0 chrX 83309120 83309154 -79290776 + (A)n Simple_repeat Simple_repeat 1 34 0 879 82 8 0 chrX 83309324 83309446 -79290484 + L1PB2 LINE L1 6022 6144 -7 863 9 0 28 chrX 83311104 83311213 -79288717 - L1PA4 LINE L1 0 6155 6050 1873 207 38 80 chrX 83311561 83312200 -79287730 - LTR9 LTR ERV1 0 612 1 797 184 61 18 chrX 83312249 83312412 -79287518 - AluJb SINE Alu -9 303 134 309 100 0 0 chrX 83312470 83312520 -79287410 + (CA)n Simple_repeat Simple_repeat 2 51 0 237 153 0 68 chrX 83314240 83314299 -79285631 + Tigger2 DNA MER2_type 2131 2185 -533 248 151 151 41 chrX 83314854 83314927 -79285003 + MER5A DNA MER1_type 10 90 -99 21 0 0 0 chrX 83315695 83315716 -79284214 + AT_rich Low_complexity Low_complexity 1 21 0 36 0 0 0 chrX 83316736 83316772 -79283158 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chrX 83316879 83316902 -79283028 + AT_rich Low_complexity Low_complexity 1 23 0 998 160 48 0 chrX 83317079 83317267 -79282663 + L1PB1 LINE L1 3 199 -6664 * 11334 194 24 13 chrX 83317242 83318312 -79281618 + L1PB1 LINE L1 608 1665 -5197 207 0 0 0 chrX 83318312 83318335 -79281595 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 11334 194 24 13 chrX 83318335 83318400 -79281530 + L1PB1 LINE L1 1665 1728 -5134 1780 184 3 0 chrX 83318400 83318699 -79281231 + AluSx SINE Alu 1 300 -12 11334 194 24 13 chrX 83318699 83321758 -79278172 + L1PB1 LINE L1 1728 5040 -1822 7975 187 147 14 chrX 83321771 83323810 -79276120 + L1PB1 LINE L1 6 2314 -4549 * 9375 189 12 3 chrX 83323802 83326790 -79273140 + L1PB1 LINE L1 3848 6863 -4 5768 156 28 10 chrX 83326786 83328593 -79271337 + L1PB1 LINE L1 5019 6860 -7 * 21 57 0 0 chrX 83328712 83328747 -79271183 + AT_rich Low_complexity Low_complexity 1 35 0 1619 187 42 6 chrX 83329756 83330115 -79269815 - L1MB3 LINE L1 -9 6174 5803 2708 245 19 21 chrX 83330128 83330843 -79269087 - L1MB3 LINE L1 -867 5279 4565 1554 194 17 10 chrX 83330843 83331131 -79268799 - AluJb SINE Alu -22 290 1 2708 245 19 21 chrX 83331131 83331219 -79268711 - L1MB3 LINE L1 -1581 4565 4478 639 243 133 5 chrX 83331209 83331427 -79268503 - L1MB3 LINE L1 -1950 4196 3951 * 245 152 0 22 chrX 83331418 83331464 -79268466 - L1P LINE L1 -1107 5039 4995 * 1284 184 16 8 chrX 83331464 83331708 -79268222 - THE1A LTR MaLR 0 355 110 900 64 0 0 chrX 83331919 83332028 -79267902 - THE1A LTR MaLR -255 109 1 11128 100 24 5 chrX 83332028 83333579 -79266351 - THE1A-int LTR MaLR 0 1580 1 2040 144 32 6 chrX 83333579 83333925 -79266005 - THE1A LTR MaLR 0 355 1 941 107 7 0 chrX 83333925 83334065 -79265865 - L1P LINE L1 -1147 4999 4859 * 5728 96 9 5 chrX 83334064 83334890 -79265040 + L1PA10 LINE L1 5343 6171 0 4438 162 51 11 chrX 83334899 83335212 -79264718 - L1PB4 LINE L1 -19 6137 5838 282 95 0 0 chrX 83335212 83335254 -79264676 + (TG)n Simple_repeat Simple_repeat 2 43 0 4438 162 51 11 chrX 83335254 83335960 -79263970 - L1PB4 LINE L1 -318 5838 5073 4817 268 27 104 chrX 83335962 83339548 -79260382 - L1PA15-16 LINE L1 -3536 3313 2 596 236 40 0 chrX 83339548 83339696 -79260234 - L1M4c LINE L1 -4818 1828 1675 1083 215 99 47 chrX 83339697 83339843 -79260087 - L1M4c LINE L1 -5052 1594 1457 2331 110 0 0 chrX 83339843 83340151 -79259779 - AluSg SINE Alu -2 308 1 1083 215 99 47 chrX 83340151 83340537 -79259393 - L1M4c LINE L1 -5189 1457 1030 318 132 0 0 chrX 83340674 83340727 -79259203 + (TG)n Simple_repeat Simple_repeat 2 54 0 1809 164 4 0 chrX 83341296 83341576 -79258354 + AluSx SINE Alu 1 281 -31 243 0 0 0 chrX 83341581 83341608 -79258322 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 780 278 70 13 chrX 83342528 83342758 -79257172 + MIR SINE MIR 4 246 -16 275 190 13 38 chrX 83342784 83342863 -79257067 + (TTA)n Simple_repeat Simple_repeat 2 78 0 636 182 63 97 chrX 83342894 83342951 -79256979 - LTR37B LTR ERV1 0 468 411 421 97 42 0 chrX 83342951 83343023 -79256907 + L1MA4A LINE L1 6225 6299 -4 636 182 63 97 chrX 83343023 83343234 -79256696 - LTR37B LTR ERV1 -57 411 209 2564 40 0 3 chrX 83343381 83343680 -79256250 + AluY SINE Alu 1 298 -13 197 403 0 0 chrX 83346758 83346830 -79253100 + MIR SINE MIR 23 94 -114 215 298 81 32 chrX 83346872 83346996 -79252934 - MIR SINE MIR -48 214 85 2177 147 59 43 chrX 83349246 83349667 -79250263 + MSTC LTR MaLR 1 428 0 527 159 68 35 chrX 83350617 83350771 -79249159 + L1MA7 LINE L1 6133 6293 -7 285 51 0 0 chrX 83350915 83350954 -79248976 + (CA)n Simple_repeat Simple_repeat 2 40 0 362 285 81 8 chrX 83351646 83351769 -79248161 + L2 LINE L2 3182 3313 0 336 316 114 48 chrX 83351901 83352129 -79247801 + L1MEd LINE L1 52 294 -5825 236 331 56 6 chrX 83352206 83352366 -79247564 + L1MEd LINE L1 945 1112 -5007 2407 228 41 3 chrX 83352408 83353062 -79246868 + L1M4 LINE L1 4633 5311 -835 776 223 24 37 chrX 83353073 83353367 -79246563 - MLT1A1 LTR MaLR 0 365 1 914 152 30 0 chrX 83353374 83353538 -79246392 - MLT1A1-int LTR MaLR -6 1729 1561 519 111 0 0 chrX 83353538 83353610 -79246320 - AluSg SINE Alu -17 292 221 1101 101 0 7 chrX 83353610 83353758 -79246172 - AluSg SINE Alu -161 149 3 1039 213 39 16 chrX 83353759 83354017 -79245913 - MLT1A1-int LTR MaLR -162 1573 1310 976 196 10 57 chrX 83354147 83354443 -79245487 + L1MB8 LINE L1 5896 6177 -1 1712 149 3 64 chrX 83354484 83354837 -79245093 - AluJb SINE Alu 0 312 1 5910 154 77 11 chrX 83356295 83357083 -79242847 + L1PA13 LINE L1 3813 4700 -1446 3596 72 30 0 chrX 83357083 83357581 -79242349 - LTR10D LTR ERV1 0 513 1 5910 154 77 11 chrX 83357581 83357921 -79242009 + L1PA13 LINE L1 4700 5016 -1130 2126 159 36 35 chrX 83357922 83358470 -79241460 - MLT2A2 LTR ERVL -2 552 1 4293 143 21 1 chrX 83358470 83359455 -79240475 + L1PA13 LINE L1 5011 6155 -8 315 122 0 0 chrX 83359470 83359519 -79240411 - MSTD LTR MaLR -347 49 1 860 267 46 80 chrX 83359519 83360070 -79239860 - MSTD-int LTR MaLR 0 1735 903 1947 149 0 7 chrX 83360228 83360523 -79239407 - AluSx SINE Alu -19 293 1 3447 244 17 48 chrX 83360619 83361453 -79238477 - MSTD-int LTR MaLR -801 934 132 5250 55 40 0 chrX 83361453 83362147 -79237783 + LTR30 LTR ERV1 1 722 0 3447 244 17 48 chrX 83362147 83362275 -79237655 - MSTD-int LTR MaLR -1603 132 2 667 216 0 0 chrX 83362277 83362411 -79237519 - MSTD LTR MaLR 0 396 263 3596 47 2 7 chrX 83362413 83362863 -79237067 + LTR7 LTR ERV1 1 448 -2 19048 84 52 58 chrX 83362865 83366172 -79233758 + HERVH LTR ERV1 1 3290 -4423 3226 109 0 6 chrX 83366162 83366665 -79233265 + HERVH LTR ERV1 3492 3991 -3722 * 4171 132 6 1 chrX 83366664 83367330 -79232600 + HERVH LTR ERV1 4481 5149 -2564 1289 133 18 9 chrX 83367331 83367549 -79232381 + HERVH LTR ERV1 5600 5819 -1894 2342 87 45 13 chrX 83367549 83367927 -79232003 + HERVH LTR ERV1 7324 7713 0 3509 55 0 7 chrX 83367927 83368378 -79231552 + LTR7 LTR ERV1 1 448 -2 778 231 61 40 chrX 83368380 83368627 -79231303 - MSTD LTR MaLR -144 252 1 361 226 34 20 chrX 83368805 83368951 -79230979 + L1M4 LINE L1 3833 3980 -2166 1989 92 68 6 chrX 83369184 83369549 -79230381 + LTR7 LTR ERV1 1 448 -2 2445 55 0 0 chrX 83369692 83370000 -79229930 + L1PA5 LINE L1 5847 6154 0 1922 128 83 0 chrX 83370041 83370329 -79229601 + AluSx SINE Alu 1 312 0 525 176 20 29 chrX 83370418 83370520 -79229410 + MER58B DNA MER1_type 241 341 0 3950 213 9 15 chrX 83370639 83371065 -79228865 - L1 LINE L1 -1233 4913 4486 2413 62 0 37 chrX 83371065 83371387 -79228543 - AluY SINE Alu -1 310 1 3950 213 9 15 chrX 83371387 83371939 -79227991 - L1 LINE L1 -1660 4486 3941 350 132 0 0 chrX 83371935 83371988 -79227942 + L1PA16 LINE L1 4911 4963 -1183 * 1320 186 128 15 chrX 83371990 83372382 -79227548 + LTR7 LTR ERV1 1 436 -14 4994 127 68 9 chrX 83372440 83373576 -79226354 + L1PA16 LINE L1 4970 6157 -9 264 321 0 0 chrX 83374286 83374367 -79225563 - Charlie8 DNA MER1_type -1 2416 2336 284 175 143 0 chrX 83374545 83374608 -79225322 + Tigger5 DNA MER2_type 8 79 -2244 1060 103 0 0 chrX 83374790 83374926 -79225004 + AluSg/x SINE Alu 158 293 -19 24 85 0 0 chrX 83375124 83375183 -79224747 + AT_rich Low_complexity Low_complexity 1 59 0 1518 202 18 64 chrX 83375334 83375785 -79224145 - MSTB1 LTR MaLR -2 430 1 626 230 17 17 chrX 83376509 83376683 -79223247 - MLT1F LTR MaLR -18 524 351 496 301 39 39 chrX 83376990 83377177 -79222753 + MIR SINE MIR 34 223 -39 248 38 19 57 chrX 83377177 83377230 -79222700 + (TA)n Simple_repeat Simple_repeat 1 51 0 496 301 39 39 chrX 83377230 83377271 -79222659 + MIR SINE MIR 222 262 0 370 279 16 47 chrX 83377374 83377503 -79222427 + MIR SINE MIR 48 172 -90 306 0 0 0 chrX 83377677 83377711 -79222219 + (CA)n Simple_repeat Simple_repeat 2 35 0 194 254 15 30 chrX 83378245 83378312 -79221618 + MER5A DNA MER1_type 124 189 0 279 0 0 0 chrX 83378505 83378536 -79221394 + (CA)n Simple_repeat Simple_repeat 2 32 0 1081 235 11 64 chrX 83378587 83378780 -79221150 - MER58B DNA MER1_type -2082 338 171 1942 157 3 0 chrX 83378780 83379073 -79220857 - AluSx SINE Alu -18 294 1 1081 235 11 64 chrX 83379073 83379236 -79220694 - MER58B DNA MER1_type -2249 171 1 386 363 102 0 chrX 83379272 83379498 -79220432 + MIR SINE MIR 14 262 0 * 620 335 36 13 chrX 83379493 83379717 -79220213 - MIR SINE MIR -26 236 8 1733 186 3 0 chrX 83379793 83380078 -79219852 - AluJo SINE Alu -15 297 12 1338 193 75 3 chrX 83380182 83380487 -79219443 + MLT2C1 LTR ERVL 1 327 -70 408 120 27 0 chrX 83380501 83380576 -79219354 - L1MA2 LINE L1 0 6304 6228 877 224 40 5 chrX 83380728 83380929 -79219001 + MER20 DNA MER1_type 7 214 -5 1193 104 5 10 chrX 83381314 83381507 -79218423 - L1MA2 LINE L1 0 6304 6113 436 312 258 15 chrX 83381873 83382280 -79217650 - L2 LINE L2 -4 3309 2804 4221 210 48 6 chrX 83382995 83383858 -79216072 + MER54A LTR ERVL 3 901 0 189 0 0 0 chrX 83383990 83384011 -79215919 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 240 33 0 0 chrX 83384928 83384958 -79214972 + LTR6A LTR ERV1 73 102 -462 27 29 0 0 chrX 83385793 83385827 -79214103 + AT_rich Low_complexity Low_complexity 1 34 0 811 286 5 0 chrX 83386359 83386562 -79213368 - L1M2 LINE L1 -5511 1338 1135 2757 214 28 2 chrX 83386728 83387260 -79212670 + L1M2 LINE L1 3 548 -6301 2015 275 51 20 chrX 83387919 83388523 -79211407 - L1M2 LINE L1 -5713 1136 514 * 9095 216 46 26 chrX 83388520 83388579 -79211351 + L1M2 LINE L1 2770 2826 -4022 2534 130 3 0 chrX 83388579 83388949 -79210981 - THE1C LTR MaLR 0 375 5 9176 129 35 63 chrX 83388953 83390576 -79209354 - THE1C-int LTR MaLR 0 1580 4 9095 216 46 26 chrX 83390576 83390597 -79209333 + L1M2 LINE L1 2828 2847 -4001 2472 101 8 41 chrX 83390597 83390985 -79208945 - THE1C LTR MaLR 0 375 1 9095 216 46 26 chrX 83390985 83391508 -79208422 + L1M2 LINE L1 2847 3358 -3490 1599 168 8 8 chrX 83391508 83391808 -79208122 - AluSx SINE Alu 0 326 27 9095 216 46 26 chrX 83391808 83393990 -79205940 + L1M2 LINE L1 3358 5621 -1227 235 143 0 0 chrX 83394004 83394046 -79205884 + L1MA4A LINE L1 6166 6207 -96 1359 222 95 10 chrX 83394235 83394321 -79205609 - MER114 LTR ERV 0 648 571 2329 184 19 0 chrX 83394321 83394739 -79205191 + MSTB LTR MaLR 1 426 0 1359 222 95 10 chrX 83394739 83395233 -79204697 - MER114 LTR ERV -77 571 19 1938 166 54 5 chrX 83395719 83396087 -79203843 - L1MA6 LINE L1 -5 6295 5910 371 174 43 0 chrX 83396089 83396158 -79203772 + L1MA6 LINE L1 5852 5923 -377 29 0 0 0 chrX 83396235 83396264 -79203666 + AT_rich Low_complexity Low_complexity 1 29 0 246 290 159 35 chrX 83396332 83396477 -79203453 + MER5A DNA MER1_type 21 183 -6 260 167 107 0 chrX 83396655 83396739 -79203191 - L1ME4a LINE L1 -2 6119 6027 763 275 88 8 chrX 83396942 83397182 -79202748 + MIR SINE MIR 4 262 0 22 70 0 0 chrX 83397286 83397329 -79202601 + AT_rich Low_complexity Low_complexity 1 43 0 908 233 10 0 chrX 83397348 83397554 -79202376 - MER92B LTR ERV1 -428 208 1 447 19 0 0 chrX 83397663 83397715 -79202215 + (TC)n Simple_repeat Simple_repeat 2 53 0 * 876 89 0 0 chrX 83397714 83397837 -79202093 + (TA)n Simple_repeat Simple_repeat 2 124 0 239 242 0 0 chrX 83397942 83398008 -79201922 + T-rich Low_complexity Low_complexity 1 66 0 345 284 0 34 chrX 83398068 83398216 -79201714 - HAL1 LINE L1 -83 2424 2282 1086 123 0 0 chrX 83398235 83398405 -79201525 - L1MA2 LINE L1 0 6304 6135 386 290 133 82 chrX 83398412 83398878 -79201052 - HAL1 LINE L1 -218 2289 1800 358 206 174 11 chrX 83400218 83400310 -79199620 - L2 LINE L2 -2 3311 3205 202 282 90 26 chrX 83400305 83400383 -79199547 + MIR SINE MIR 10 92 -170 * 892 246 41 16 chrX 83402407 83402973 -79196957 - L1ME2 LINE L1 -13 6151 5449 1984 283 55 27 chrX 83403107 83403811 -79196119 - L1PA13 LINE L1 -6063 724 1 870 133 13 13 chrX 83404584 83404742 -79195188 - MER61A LTR ERV1 0 343 186 23290 92 45 16 chrX 83404745 83408468 -79191462 - MER61A-int LTR ERV1 0 5217 1320 3125 177 27 30 chrX 83408507 83409209 -79190721 - MER61A-int LTR ERV1 -4517 700 1 2053 118 17 59 chrX 83409209 83409565 -79190365 - MER61A LTR ERV1 0 343 3 1972 188 60 15 chrX 83410070 83410468 -79189462 - MSTB1 LTR MaLR -16 416 1 273 210 0 0 chrX 83410480 83410542 -79189388 + (TA)n Simple_repeat Simple_repeat 1 62 0 316 197 14 28 chrX 83410542 83410613 -79189317 - L1MCa LINE L1 -4362 2064 1995 1076 77 32 0 chrX 83413342 83413497 -79186433 - L1MA1 LINE L1 0 6302 6143 302 363 140 16 chrX 83413577 83414070 -79185860 - L2 LINE L2 -565 2749 2196 3903 115 20 2 chrX 83414077 83414666 -79185264 + L1PA13 LINE L1 5564 6163 0 214 360 18 26 chrX 83415543 83415657 -79184273 - MIR SINE MIR -49 159 47 23 54 0 0 chrX 83416002 83416039 -79183891 + AT_rich Low_complexity Low_complexity 1 37 0 1136 238 78 10 chrX 83416676 83417071 -79182859 - LTR37A LTR ERV1 0 426 5 336 321 52 52 chrX 83417513 83417781 -79182149 + LTR40a LTR ERVL 168 435 -84 333 82 0 0 chrX 83417797 83417846 -79182084 + (TG)n Simple_repeat Simple_repeat 1 49 0 836 261 11 62 chrX 83418517 83418759 -79181171 - MIR SINE MIR -1 261 8 2207 112 0 13 chrX 83418759 83419062 -79180868 + AluSx SINE Alu 1 299 -13 375 23 0 0 chrX 83419062 83419106 -79180824 + (TA)n Simple_repeat Simple_repeat 2 45 0 836 261 11 62 chrX 83419106 83419134 -79180796 - MIR SINE MIR -252 10 4 1442 229 91 15 chrX 83419281 83419679 -79180251 + MSTC LTR MaLR 1 428 0 1665 114 0 4 chrX 83419922 83420159 -79179771 - AluSq SINE Alu -77 236 1 826 279 96 8 chrX 83420654 83421030 -79178900 + L1ME4a LINE L1 5518 5926 -195 30 0 0 0 chrX 83421894 83421924 -79178006 + AT_rich Low_complexity Low_complexity 1 30 0 1767 130 62 0 chrX 83421933 83422209 -79177721 - AluSx SINE Alu -19 293 1 2074 93 0 62 chrX 83422800 83423121 -79176809 + AluSg SINE Alu 1 301 -9 716 196 60 15 chrX 83423443 83423704 -79176226 - MLT1A1 LTR MaLR 0 374 5 24 0 0 0 chrX 83423857 83423881 -79176049 + AT_rich Low_complexity Low_complexity 1 24 0 192 40 0 0 chrX 83424066 83424091 -79175839 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chrX 83424216 83424251 -79175679 + AT_rich Low_complexity Low_complexity 1 35 0 1091 94 0 0 chrX 83425881 83426030 -79173900 + L1MA2 LINE L1 6155 6303 -1 592 267 87 26 chrX 83426115 83426310 -79173620 + MIR SINE MIR 26 232 -30 928 210 13 76 chrX 83426319 83426543 -79173387 + MER63A DNA MER1_type 1 210 0 25 0 0 0 chrX 83426920 83426945 -79172985 + AT_rich Low_complexity Low_complexity 1 25 0 194 354 0 0 chrX 83427709 83427774 -79172156 - MER5A DNA MER1_type -50 139 75 655 221 175 0 chrX 83427890 83428044 -79171886 + MER5A DNA MER1_type 9 189 0 2157 119 0 3 chrX 83428211 83428513 -79171417 - AluSq SINE Alu -12 301 1 221 290 19 84 chrX 83429903 83430010 -79169920 - L2 LINE L2 -18 3254 3155 297 0 0 0 chrX 83430650 83430683 -79169247 + (CA)n Simple_repeat Simple_repeat 2 34 0 3789 270 87 34 chrX 83431298 83433722 -79166208 + L1M3c LINE L1 12 2227 -3984 434 191 148 9 chrX 83433722 83433837 -79166093 - L1M2 LINE L1 -804 5487 5357 396 209 34 7 chrX 83433837 83433985 -79165945 + L1M3c LINE L1 3147 3298 -2912 386 313 78 52 chrX 83434009 83434469 -79165461 - MER51A-int LTR ERV1 -399 6130 5659 256 247 25 25 chrX 83434946 83435027 -79164903 - MER51A-int LTR ERV1 -1654 6745 6665 357 143 0 0 chrX 83435208 83435264 -79164666 - MER51A-int LTR ERV1 -274 7542 7487 1287 177 0 40 chrX 83435516 83435764 -79164166 - MER51A-int LTR ERV1 -6925 891 654 2129 182 44 83 chrX 83436111 83436655 -79163275 - MER51A-int LTR ERV1 -7293 523 1 2006 168 33 43 chrX 83436655 83437174 -79162756 - MER51A LTR ERV1 0 634 100 234 222 69 42 chrX 83437175 83437247 -79162683 + MLT1J LTR MaLR 393 466 -45 23 0 0 0 chrX 83437646 83437669 -79162261 + AT_rich Low_complexity Low_complexity 1 23 0 991 246 3 7 chrX 83437669 83437940 -79161990 - L1PA16 LINE L1 0 6163 5923 35 0 0 0 chrX 83437948 83437983 -79161947 + AT_rich Low_complexity Low_complexity 1 35 0 1331 145 4 0 chrX 83437991 83438218 -79161712 - L1PA13 LINE L1 -6 6808 6581 1414 173 19 4 chrX 83438220 83438491 -79161439 + L1P LINE L1 5122 5396 -750 * 6891 245 83 35 chrX 83438484 83440405 -79159525 - L1PA13 LINE L1 -229 6588 4760 186 43 0 0 chrX 83440405 83440428 -79159502 + (TTA)n Simple_repeat Simple_repeat 2 24 0 6891 245 83 35 chrX 83440428 83442853 -79157077 - L1PA13 LINE L1 -2057 4760 2016 2155 121 0 3 chrX 83442853 83443159 -79156771 - AluSx SINE Alu -7 305 1 6891 245 83 35 chrX 83443159 83443294 -79156636 - L1PA13 LINE L1 -4801 2016 1889 1209 170 152 114 chrX 83443308 83443533 -79156397 - MSTA LTR MaLR -18 410 162 1769 152 0 44 chrX 83443533 83443667 -79156263 + AluSx SINE Alu 3 141 -171 2252 91 0 20 chrX 83443667 83443964 -79155966 + AluY SINE Alu 1 291 -20 1769 152 0 44 chrX 83443964 83444126 -79155804 + AluSx SINE Alu 141 286 -26 1209 170 152 114 chrX 83444126 83444295 -79155635 - MSTA LTR MaLR -266 162 1 9011 139 16 53 chrX 83444295 83445385 -79154545 - MSTA-int LTR MaLR 0 1580 568 6821 73 8 0 chrX 83445385 83446404 -79153526 - L1PA8 LINE L1 0 6172 5141 9011 139 16 53 chrX 83446404 83446949 -79152981 - MSTA-int LTR MaLR -1012 568 5 1545 190 14 4 chrX 83446949 83447375 -79152555 - AluSx SINE Alu 0 429 1 1573 182 164 16 chrX 83447390 83447763 -79152167 - MSTA LTR MaLR 0 428 1 1527 226 22 0 chrX 83447769 83448132 -79151798 - L1PA13 LINE L1 -4923 1864 1494 * 1584 319 14 27 chrX 83448102 83448654 -79151276 - L1PA13 LINE L1 -6242 545 1 24 32 0 0 chrX 83448711 83448742 -79151188 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chrX 83449079 83449102 -79150828 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 83449794 83449822 -79150108 + AT_rich Low_complexity Low_complexity 1 28 0 1795 154 15 81 chrX 83451128 83451523 -79148407 + THE1C LTR MaLR 5 373 -2 26 0 0 0 chrX 83452112 83452138 -79147792 + AT_rich Low_complexity Low_complexity 1 26 0 1155 162 30 4 chrX 83452739 83452974 -79146956 - L1MA9 LINE L1 0 6312 6072 2194 180 28 49 chrX 83453271 83453777 -79146153 - L1MA9 LINE L1 -196 6116 5622 297 184 0 0 chrX 83455112 83455161 -79144769 + L1MCa LINE L1 20 68 -6358 2168 92 0 54 chrX 83455290 83455424 -79144506 + AluSx SINE Alu 3 143 -169 2174 110 0 7 chrX 83455424 83455725 -79144205 + AluSg1 SINE Alu 1 299 -10 333 0 0 0 chrX 83455726 83455763 -79144167 + (CA)n Simple_repeat Simple_repeat 2 38 0 2168 92 0 54 chrX 83455763 83455943 -79143987 + AluSx SINE Alu 142 302 -10 1943 131 7 10 chrX 83456248 83456546 -79143384 - AluSq SINE Alu -16 297 1 270 226 117 22 chrX 83457904 83458041 -79141889 + L2 LINE L2 3016 3165 -148 2146 136 0 0 chrX 83458150 83458460 -79141470 - AluSx SINE Alu -2 310 1 461 246 88 20 chrX 83458596 83458773 -79141157 + MLT1J2 LTR MaLR 1 187 -222 28555 109 7 19 chrX 83458845 83464785 -79135145 + L1P3 LINE L1 2 5958 -511 1703 284 43 26 chrX 83464902 83465091 -79134839 + L1MCa LINE L1 273 457 -6150 2092 191 38 12 chrX 83465091 83465509 -79134421 - MSTB1 LTR MaLR -3 429 1 1703 284 43 26 chrX 83465509 83465929 -79134001 + L1MCa LINE L1 457 892 -5715 294 233 0 11 chrX 83466053 83466143 -79133787 - LTR37A LTR ERV1 -29 397 309 1877 218 46 5 chrX 83466304 83466716 -79133214 - MSTB1 LTR MaLR 0 432 4 23 0 0 0 chrX 83466921 83466944 -79132986 + AT_rich Low_complexity Low_complexity 1 23 0 1933 162 42 25 chrX 83467025 83467383 -79132547 - THE1B LTR MaLR 0 364 1 21 36 0 0 chrX 83467540 83467568 -79132362 + AT_rich Low_complexity Low_complexity 1 28 0 190 279 25 38 chrX 83467639 83467718 -79132212 - L2 LINE L2 -4 3309 3232 2180 153 37 8 chrX 83468014 83468368 -79131562 - THE1B LTR MaLR 0 364 1 9172 167 35 9 chrX 83468368 83469908 -79130022 - THE1B-int LTR MaLR 0 1580 1 2314 150 17 8 chrX 83469908 83470269 -79129661 - THE1B LTR MaLR 0 364 1 1020 123 13 0 chrX 83471306 83471460 -79128470 + L1P5 LINE L1 5499 5654 -497 2462 116 8 0 chrX 83472105 83472477 -79127453 - L1PB1 LINE L1 -1 6150 5776 551 53 53 41 chrX 83472489 83472660 -79127270 + (TA)n Simple_repeat Simple_repeat 2 174 0 650 26 22 74 chrX 83472686 83472918 -79127012 + (TA)n Simple_repeat Simple_repeat 1 219 0 2718 86 15 13 chrX 83472924 83473319 -79126611 - L1PB1 LINE L1 -360 5791 5396 11289 217 18 7 chrX 83473320 83476049 -79123881 - L1PB1 LINE L1 -801 5345 2588 9775 130 34 6 chrX 83476050 83477970 -79121960 + L1PB1 LINE L1 1297 3271 -3591 476 256 122 29 chrX 83478151 83478323 -79121607 + MLT1J LTR MaLR 5 192 -319 26 30 0 0 chrX 83480090 83480123 -79119807 + AT_rich Low_complexity Low_complexity 1 33 0 891 245 38 71 chrX 83480123 83480491 -79119439 - L1MA9 LINE L1 -38 6274 5919 * 2570 191 27 136 chrX 83480465 83480819 -79119111 - L1MA9 LINE L1 -748 5398 5007 1508 213 0 21 chrX 83480819 83481106 -79118824 + AluJo SINE Alu 13 293 -19 2570 191 27 136 chrX 83481106 83481822 -79118108 - L1MA9 LINE L1 -1139 5007 4445 205 263 171 0 chrX 83482602 83482678 -79117252 - L2 LINE L2 -43 3229 3141 378 42 0 0 chrX 83482830 83482878 -79117052 + (TG)n Simple_repeat Simple_repeat 1 48 0 715 267 62 18 chrX 83483508 83483781 -79116149 + MER46C DNA MER2_type 18 302 -36 319 331 82 74 chrX 83483890 83484159 -79115771 + L2 LINE L2 2986 3256 -16 351 317 0 20 chrX 83484727 83484828 -79115102 + MER5A DNA MER1_type 16 114 -75 1915 239 118 37 chrX 83484869 83485438 -79114492 - MLT1E3 LTR MaLR 0 624 10 241 307 115 23 chrX 83485510 83485728 -79114202 - L1MC4a LINE L1 -1735 6073 5836 656 290 70 65 chrX 83485748 83486117 -79113813 + L2 LINE L2 2935 3305 -8 456 260 151 0 chrX 83486121 83486340 -79113590 - L1MC4a LINE L1 -320 5801 5550 309 284 41 59 chrX 83486419 83486588 -79113342 - L1MC4a LINE L1 -2378 5430 5265 1282 254 35 9 chrX 83486660 83486999 -79112931 - MER4D LTR ERV1 -7 896 549 374 254 71 31 chrX 83487001 83487166 -79112764 - MER4E LTR ERV1 -590 282 1 22 0 0 0 chrX 83487193 83487215 -79112715 + AT_rich Low_complexity Low_complexity 1 22 0 376 300 30 57 chrX 83487542 83487805 -79112125 - L1MC4a LINE L1 -852 5294 5039 4499 119 61 55 chrX 83488552 83489369 -79110561 - LTR12 LTR ERV1 0 826 5 2009 172 86 52 chrX 83489385 83489967 -79109963 - pTR5 LTR ERV1 -1094 1344 743 239 387 113 7 chrX 83490967 83491109 -79108821 + L2 LINE L2 3103 3259 -13 2342 68 0 3 chrX 83491561 83491856 -79108074 + AluY SINE Alu 1 294 -17 641 320 78 12 chrX 83492395 83492639 -79107291 + MIR SINE MIR 2 261 -1 506 298 43 6 chrX 83493816 83493977 -79105953 - MIR3 SINE MIR -3 205 39 1534 121 4 17 chrX 83494816 83495048 -79104882 + AluSx SINE Alu 1 229 -83 408 278 85 67 chrX 83495605 83495875 -79104055 - L1ME4a LINE L1 -103 6018 5744 1415 191 45 42 chrX 83495931 83496240 -79103690 - AluJo SINE Alu -2 310 1 274 235 25 31 chrX 83497153 83497315 -79102615 + (TA)n Simple_repeat Simple_repeat 2 162 0 23 0 0 0 chrX 83497359 83497382 -79102548 + AT_rich Low_complexity Low_complexity 1 23 0 2485 62 3 0 chrX 83497842 83498146 -79101784 - AluSp SINE Alu -8 305 1 668 221 40 0 chrX 83498311 83498460 -79101470 + Tigger3(Golem) DNA MER2_type 128 282 -2747 1079 228 13 0 chrX 83498461 83498689 -79101241 + MER20B DNA MER1_type 381 611 -172 587 289 0 6 chrX 83498698 83498871 -79101059 + L1 LINE L1 3491 3662 -2484 2021 179 11 6 chrX 83498903 83499266 -79100664 - MLT1A1 LTR MaLR 0 365 1 378 0 0 0 chrX 83500208 83500250 -79099680 + (CA)n Simple_repeat Simple_repeat 2 43 0 953 216 33 111 chrX 83501292 83501484 -79098446 - L1M4c LINE L1 -3827 2555 2349 2189 112 0 16 chrX 83501484 83501787 -79098143 + AluSx SINE Alu 1 298 -14 953 216 33 111 chrX 83501787 83502126 -79097804 - L1M4c LINE L1 -4033 2349 2071 42895 30 24 1 chrX 83502141 83508153 -79091777 + L1HS LINE L1 1 6151 -4 321 207 47 27 chrX 83508194 83508363 -79091567 - L1M4c LINE L1 -4326 2058 1792 1887 145 15 6 chrX 83508365 83508696 -79091234 - L1MA4A LINE L1 -33 6972 6639 6158 30 3 0 chrX 83508708 83509430 -79090500 - L1PA4 LINE L1 -3 6152 5429 6827 32 0 0 chrX 83509430 83510330 -79089600 + L1P2 LINE L1 4577 5476 -678 * 12375 219 32 14 chrX 83510326 83510683 -79089247 - L1MA4A LINE L1 -356 6649 6300 1909 158 0 16 chrX 83510683 83510999 -79088931 - AluSx SINE Alu -1 311 1 12375 219 32 14 chrX 83510999 83516563 -79083367 - L1MA4A LINE L1 -705 6300 607 2321 243 50 7 chrX 83516633 83517311 -79082619 - L1M4c LINE L1 -4638 1746 1040 1220 222 0 22 chrX 83517311 83517586 -79082344 - AluJo SINE Alu -2 310 42 528 233 87 81 chrX 83517586 83518069 -79081861 - L1M4c LINE L1 -5233 1047 540 2185 96 20 7 chrX 83518759 83519061 -79080869 - AluSq SINE Alu -7 306 1 21 0 0 0 chrX 83519341 83519362 -79080568 + AT_rich Low_complexity Low_complexity 1 21 0 181 309 15 0 chrX 83519706 83519774 -79080156 - MIR SINE MIR -109 153 85 339 25 0 0 chrX 83519902 83519942 -79079988 + (CA)n Simple_repeat Simple_repeat 2 41 0 482 219 96 22 chrX 83520403 83520581 -79079349 + L1MC5 LINE L1 7341 7531 -430 1046 122 18 6 chrX 83520693 83520857 -79079073 + MER46B DNA MER2_type 1 41 -195 13290 184 53 7 chrX 83520858 83525908 -79074022 - L1PBa LINE L1 -1292 5570 290 238 159 23 0 chrX 83525908 83525952 -79073978 - L1PBa LINE L1 -6818 45 1 2625 39 0 0 chrX 83526439 83526747 -79073183 + AluY SINE Alu 1 308 -3 21 0 0 0 chrX 83527476 83527497 -79072433 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 83527573 83527613 -79072317 + AT_rich Low_complexity Low_complexity 1 40 0 1929 89 16 0 chrX 83528675 83528932 -79070998 + AluSg SINE Alu 32 292 -18 222 301 8 73 chrX 83529513 83529636 -79070294 - MIR SINE MIR 0 262 148 194 237 65 97 chrX 83529869 83529962 -79069968 - MER5B DNA MER1_type -1 177 88 414 314 22 38 chrX 83530116 83530301 -79069629 + MER5A DNA MER1_type 7 188 -1 1382 58 0 0 chrX 83530428 83530600 -79069330 - AluY SINE Alu -9 302 131 201 259 119 98 chrX 83531183 83531326 -79068604 + MER5A DNA MER1_type 1 146 -43 408 341 24 3 chrX 83532102 83532254 -79067676 + MER5A DNA MER1_type 26 189 0 2381 244 19 22 chrX 83532438 83533146 -79066784 + L1MD3 LINE L1 6610 7276 -719 483 213 16 33 chrX 83533148 83533270 -79066660 + MLT1F1 LTR MaLR 1 120 -447 2289 231 17 24 chrX 83533270 83533854 -79066076 + L1MD3 LINE L1 7406 7985 -10 344 179 45 0 chrX 83533876 83533943 -79065987 + L1ME2 LINE L1 5786 5855 -311 1001 72 0 7 chrX 83533966 83534104 -79065826 - L1PA8 LINE L1 -3 6169 6033 704 36 0 0 chrX 83534208 83534292 -79065638 + L1PA8 LINE L1 6015 6098 -74 829 256 71 8 chrX 83534300 83534338 -79065592 + L1ME2 LINE L1 5868 5902 -262 1698 91 12 8 chrX 83534338 83534590 -79065340 + L1PA8 LINE L1 5918 6170 -2 829 256 71 8 chrX 83534590 83534817 -79065113 + L1ME2 LINE L1 5902 6150 -14 26 30 0 0 chrX 83536073 83536106 -79063824 + AT_rich Low_complexity Low_complexity 1 33 0 805 301 87 25 chrX 83536593 83537166 -79062764 - L1MC4a LINE L1 -346 5820 5263 198 182 26 13 chrX 83537404 83537481 -79062449 + (TA)n Simple_repeat Simple_repeat 2 79 0 387 333 76 61 chrX 83537511 83537907 -79062023 - L1MEd LINE L1 -5303 816 415 2462 105 19 8 chrX 83538070 83538441 -79061489 + THE1C LTR MaLR 1 375 0 5292 111 0 3 chrX 83539571 83541005 -79058925 - L1PA12 LINE L1 -10 6158 4667 1562 97 4 0 chrX 83541006 83541244 -79058686 + L1P LINE L1 2273 2511 -3635 499 298 111 19 chrX 83541689 83542004 -79057926 - L1MC4a LINE L1 -1854 5954 5611 217 255 0 0 chrX 83542406 83542457 -79057473 - MIR SINE MIR -133 129 79 422 362 0 9 chrX 83542534 83542650 -79057280 + MER91A DNA MER1_type 1 115 -81 939 299 124 22 chrX 83543377 83543821 -79056109 + L2 LINE L2 2260 2748 -566 2189 119 0 0 chrX 83543892 83544262 -79055668 - AluSg SINE Alu 0 370 1 356 335 35 35 chrX 83544282 83544482 -79055448 + L2 LINE L2 2879 3078 -194 23 0 0 0 chrX 83544505 83544528 -79055402 + AT_rich Low_complexity Low_complexity 1 23 0 372 298 32 19 chrX 83544771 83544929 -79055001 - MIR SINE MIR -6 256 97 478 291 50 37 chrX 83545034 83545275 -79054655 + L1MC4 LINE L1 7798 8041 -1 506 266 107 10 chrX 83545390 83545680 -79054250 + L1MC5 LINE L1 7609 7926 -35 2401 225 42 37 chrX 83546271 83546324 -79053606 - MLT2B3 LTR ERVL -8 546 495 508 14 29 0 chrX 83546324 83546393 -79053537 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 2401 225 42 37 chrX 83546393 83546881 -79053049 - MLT2B3 LTR ERVL -59 495 2 339 370 112 23 chrX 83547553 83547856 -79052074 + L2 LINE L2 2927 3256 -16 1681 204 198 0 chrX 83548254 83548637 -79051293 - MER74C LTR ERVL 0 460 2 1054 158 25 0 chrX 83548863 83549065 -79050865 - L1MA9 LINE L1 -7 6305 6099 397 313 38 15 chrX 83549240 83549371 -79050559 - MER5A DNA MER1_type -7 182 49 2173 119 0 0 chrX 83549455 83549765 -79050165 + AluSq SINE Alu 1 310 -3 7322 33 2 18 chrX 83551271 83552798 -79047132 + L1PA4 LINE L1 4643 6155 0 244 343 93 23 chrX 83553149 83553321 -79046609 - LTR33A LTR ERVL -247 276 93 1117 183 9 0 chrX 83553768 83553998 -79045932 + L1 LINE L1 4309 4540 -1606 311 55 364 0 chrX 83553998 83554053 -79045877 - MER50-int LTR ERV1 -1120 3760 3686 4204 148 3 23 chrX 83554054 83554742 -79045188 - MER50-int LTR ERV1 -6525 680 7 4080 156 32 6 chrX 83554742 83555435 -79044495 - MER50 LTR ERV1 -12 722 12 1211 220 39 58 chrX 83555745 83556159 -79043771 + L1M4b LINE L1 1222 1627 -5232 1637 229 30 16 chrX 83556175 83556603 -79043327 - L1MA7 LINE L1 0 6291 5858 2612 149 9 0 chrX 83556606 83557036 -79042894 - MER57B LTR ERV1 0 434 1 3025 100 0 0 chrX 83557063 83557463 -79042467 + HERVL LTR ERVL 2616 3015 -2639 * 19388 79 13 7 chrX 83557451 83560027 -79039903 + HERVL LTR ERVL 1778 4369 -1285 19590 185 23 16 chrX 83560028 83562337 -79037593 - L1MA1 LINE L1 -370 7351 5061 2449 73 0 3 chrX 83562337 83562640 -79037290 + AluY SINE Alu 1 302 -9 19590 185 23 16 chrX 83562640 83567596 -79032334 - L1MA1 LINE L1 -2660 5061 16 811 209 40 10 chrX 83567605 83567806 -79032124 - L1 LINE L1 -1947 4199 3993 4797 222 28 34 chrX 83567811 83569095 -79030835 + L1MD3 LINE L1 6703 7978 -17 1328 231 40 0 chrX 83569096 83569414 -79030516 - AluJo SINE Alu 0 329 1 225 0 0 0 chrX 83569417 83569442 -79030488 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 375 325 81 51 chrX 83569477 83569871 -79030059 - L2 LINE L2 -727 2587 2182 366 291 96 99 chrX 83571127 83571409 -79028521 - L2 LINE L2 0 3272 2992 537 273 78 50 chrX 83571617 83571649 -79028281 - MIR SINE MIR -11 251 221 2033 111 7 10 chrX 83571649 83571937 -79027993 - AluSc SINE Alu -22 287 1 537 273 78 50 chrX 83571937 83572146 -79027784 - MIR SINE MIR -41 221 3 292 316 37 14 chrX 83572898 83573044 -79026886 + MER5B DNA MER1_type 21 162 -16 388 272 74 40 chrX 83574016 83574165 -79025765 - MIR SINE MIR -65 143 39 2024 137 23 3 chrX 83574374 83574680 -79025250 - AluJb SINE Alu 0 312 1 331 329 68 92 chrX 83574748 83575043 -79024887 - L2 LINE L2 -8 3264 2977 2235 169 13 2 chrX 83576196 83576593 -79023337 - MER57A LTR ERV1 -2 401 1 1701 111 16 4 chrX 83576594 83576847 -79023083 - MER57A-int LTR ERV1 -2 7535 7280 664 139 31 31 chrX 83576848 83576977 -79022953 - LTR54B LTR ERV1 -367 131 3 9767 133 19 5 chrX 83576977 83578484 -79021446 - MER57A-int LTR ERV1 -391 7146 5620 576 262 0 0 chrX 83578526 83578694 -79021236 + (TA)n Simple_repeat Simple_repeat 2 169 0 3119 133 10 8 chrX 83578695 83579191 -79020739 - MER57A-int LTR ERV1 -1937 5600 5104 263 261 38 45 chrX 83579285 83579442 -79020488 - MER57A-int LTR ERV1 -2080 2935 2780 26 0 0 0 chrX 83579463 83579489 -79020441 + AT_rich Low_complexity Low_complexity 1 26 0 333 257 53 48 chrX 83579512 83579718 -79020212 - MER57A-int LTR ERV1 -3023 1913 1707 297 247 0 11 chrX 83579819 83579908 -79020022 - MER57A-int LTR ERV1 -2890 3441 3354 346 219 48 10 chrX 83580210 83580310 -79019620 - MER57A-int LTR ERV1 -3691 1947 1096 364 161 0 0 chrX 83580498 83580560 -79019370 - MER34C LTR ERV1 -369 216 155 1549 178 10 23 chrX 83580820 83581129 -79018801 - MER57A-int LTR ERV1 -6706 831 527 714 202 8 113 chrX 83581422 83581686 -79018244 + LTR12 LTR ERV1 182 452 -262 3177 167 6 9 chrX 83581706 83582232 -79017698 - MER57A-int LTR ERV1 -7012 525 2 1721 175 22 0 chrX 83582233 83582547 -79017383 - MER57A LTR ERV1 0 403 83 1674 141 159 73 chrX 83582547 83582917 -79017013 - MER4A LTR ERV1 0 664 263 619 117 0 48 chrX 83582917 83583020 -79016910 - MER4A LTR ERV1 -566 98 1 586 114 0 0 chrX 83583020 83583106 -79016824 - MER57A LTR ERV1 -317 86 1 2730 134 13 26 chrX 83583219 83583430 -79016500 + MER4B LTR ERV1 1 213 -397 327 25 0 0 chrX 83583430 83583470 -79016460 + (CAA)n Simple_repeat Simple_repeat 2 41 0 2730 134 13 26 chrX 83583470 83583727 -79016203 + MER4B LTR ERV1 213 463 -147 753 144 37 112 chrX 83583731 83583919 -79016011 - LTR39 LTR ERV1 -609 174 1 812 295 26 0 chrX 83584057 83584284 -79015646 - MIR SINE MIR 0 262 30 6352 131 73 20 chrX 83584759 83585928 -79014002 - Tigger3b DNA MER2_type -1 1230 1 332 77 19 0 chrX 83585928 83585980 -79013950 + (TA)n Simple_repeat Simple_repeat 2 54 0 2207 131 8 58 chrX 83586398 83586779 -79013151 + THE1B LTR MaLR 2 363 -1 6011 92 35 6 chrX 83586858 83587951 -79011979 + L1PA10 LINE L1 5046 6164 -4 272 160 0 0 chrX 83588733 83588783 -79011147 + L1MA9 LINE L1 6263 6312 0 295 258 40 8 chrX 83589544 83589668 -79010262 + (TA)n Simple_repeat Simple_repeat 1 128 0 5627 109 22 23 chrX 83589937 83591153 -79008777 + L1PA12 LINE L1 4251 5480 -688 189 0 0 0 chrX 83591153 83591174 -79008756 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5627 109 22 23 chrX 83591174 83591863 -79008067 + L1PA12 LINE L1 5480 6168 0 270 56 0 0 chrX 83591882 83591918 -79008012 + (A)n Simple_repeat Simple_repeat 1 36 0 752 90 0 0 chrX 83592232 83592332 -79007598 - MER4E LTR ERV1 -5 761 662 3072 143 6 21 chrX 83592335 83592868 -79007062 - MER4E LTR ERV1 -241 525 1 285 128 0 0 chrX 83593437 83593484 -79006446 + (TG)n Simple_repeat Simple_repeat 1 47 0 10691 224 51 15 chrX 83594643 83598514 -79001416 + L1PA13 LINE L1 1 4014 -2783 5505 161 86 3 chrX 83598511 83600305 -78999625 + L1PA13 LINE L1 4852 6806 -8 * 2127 178 18 13 chrX 83600313 83600707 -78999223 - MSTB1 LTR MaLR -32 400 5 3353 161 9 3 chrX 83600876 83601448 -78998482 + L1PA16 LINE L1 5583 6157 -9 206 280 262 9 chrX 83601795 83601902 -78998028 - L2 LINE L2 0 3313 3180 699 197 0 0 chrX 83602042 83602174 -78997756 + FLAM_C SINE Alu 1 132 -1 1099 317 54 5 chrX 83602305 83602674 -78997256 + MLT1I LTR MaLR 21 407 -2 281 408 35 13 chrX 83602773 83603001 -78996929 - L2 LINE L2 -513 2801 2569 315 324 83 58 chrX 83603251 83603578 -78996352 - L2 LINE L2 -976 2338 2004 191 340 158 30 chrX 83603758 83604087 -78995843 - L2 LINE L2 -1630 1684 1314 2259 102 7 0 chrX 83604159 83604453 -78995477 + AluSx SINE Alu 1 296 -16 14116 235 40 25 chrX 83604600 83605620 -78994310 + L1PA12 LINE L1 25 1028 -6556 4447 139 0 13 chrX 83605620 83606320 -78993610 + LTR8 LTR ERV1 1 691 0 14116 235 40 25 chrX 83606320 83607895 -78992035 + L1PA12 LINE L1 1028 2578 -5006 186 43 0 0 chrX 83607895 83607918 -78992012 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 14116 235 40 25 chrX 83607918 83610728 -78989202 + L1PA12 LINE L1 2578 6696 -888 279 305 12 0 chrX 83611352 83611434 -78988496 - L1ME LINE L1 -5985 85 3 230 337 45 56 chrX 83611568 83611746 -78988184 + L2 LINE L2 2135 2310 -1004 1061 316 78 17 chrX 83611861 83612336 -78987594 + MLT1H LTR MaLR 44 547 -2 469 389 27 19 chrX 83612628 83612928 -78987002 + L2 LINE L2 2776 3076 -237 280 277 34 95 chrX 83613184 83613332 -78986598 + MLT1I LTR MaLR 232 370 -39 224 365 130 0 chrX 83613478 83613593 -78986337 + L2 LINE L2 3143 3272 0 23 0 0 0 chrX 83613934 83613957 -78985973 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrX 83614319 83614361 -78985569 + AT_rich Low_complexity Low_complexity 1 42 0 213 344 17 61 chrX 83614454 83614634 -78985296 + L2 LINE L2 2656 2827 -487 289 331 23 39 chrX 83615022 83615152 -78984778 - MIR3 SINE MIR -5 203 76 357 24 0 0 chrX 83615477 83615519 -78984411 + (TA)n Simple_repeat Simple_repeat 1 42 0 5341 170 14 13 chrX 83615521 83616938 -78982992 - L1MA3 LINE L1 -44 7680 6264 14059 195 65 9 chrX 83616949 83618218 -78981712 - L1MA3 LINE L1 -3265 4300 3103 441 0 0 0 chrX 83618218 83618267 -78981663 + (TG)n Simple_repeat Simple_repeat 2 50 0 14059 195 65 9 chrX 83618267 83620404 -78979526 - L1MA3 LINE L1 -4462 3103 701 370 358 5 29 chrX 83620507 83620711 -78979219 - HERV16 LTR ERVL -1664 3332 3134 2317 316 51 29 chrX 83620940 83622047 -78977883 - HERV16 LTR ERVL -1907 3089 2028 354 282 94 35 chrX 83622044 83622214 -78977716 - HERV16 LTR ERVL -3209 1787 1608 * 1644 340 42 42 chrX 83622416 83623498 -78976432 - HERV16 LTR ERVL -3688 1308 227 428 237 140 18 chrX 83623582 83623696 -78976234 + MLT1E LTR MaLR 2 129 -464 5552 247 11 7 chrX 83623696 83624911 -78975019 - HERV16 LTR ERVL -1081 4683 3464 2143 148 79 25 chrX 83624913 83625319 -78974611 - MSTA LTR MaLR 0 428 1 8513 176 29 39 chrX 83625322 83625359 -78974571 - MSTA-int LTR MaLR -2 1649 1613 1750 58 0 0 chrX 83625359 83625582 -78974348 + L1PA2 LINE L1 5933 6155 0 8513 176 29 39 chrX 83625582 83627208 -78972722 - MSTA-int LTR MaLR -38 1613 1 2432 144 31 17 chrX 83627213 83627630 -78972300 - MSTA LTR MaLR -5 423 1 2354 160 34 2 chrX 83627636 83628079 -78971851 + L1MA8 LINE L1 5799 6255 -36 586 343 14 27 chrX 83628087 83628144 -78971786 + L1ME3A LINE L1 5498 5554 -616 1573 106 0 5 chrX 83628144 83628362 -78971568 - AluSg/x SINE Alu -11 301 85 586 343 14 27 chrX 83628362 83628742 -78971188 + L1ME3A LINE L1 5554 5929 -241 24 0 0 0 chrX 83629711 83629735 -78970195 + AT_rich Low_complexity Low_complexity 1 24 0 1380 206 61 42 chrX 83629760 83630139 -78969791 + MLT1B LTR MaLR 1 386 -4 1236 242 27 0 chrX 83630139 83630395 -78969535 + Tigger7 DNA MER2_type 2 264 -469 292 195 0 91 chrX 83630396 83630473 -78969457 + Tigger7 DNA MER2_type 2386 2455 -32 1997 229 45 29 chrX 83630499 83631103 -78968827 + MLT1B-int LTR MaLR 5 715 -656 1445 261 35 0 chrX 83631280 83631621 -78968309 + MLT1B-int LTR MaLR 995 1347 -24 1514 218 45 24 chrX 83631649 83632029 -78967901 + MLT1B LTR MaLR 3 390 0 281 358 104 15 chrX 83632856 83633116 -78966814 + L3 LINE CR1 550 832 -745 1224 230 0 8 chrX 83633136 83633397 -78966533 + AluJo SINE Alu 19 277 -35 859 125 5 33 chrX 83633423 83633447 -78966483 + (GAAA)n Simple_repeat Simple_repeat 2 25 -155 363 44 0 0 chrX 83633447 83633492 -78966438 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 859 125 5 33 chrX 83633492 83633651 -78966279 + (GAAA)n Simple_repeat Simple_repeat 25 180 0 24 32 0 0 chrX 83633803 83633834 -78966096 + AT_rich Low_complexity Low_complexity 1 31 0 351 246 44 35 chrX 83634602 83634716 -78965214 + L3 LINE CR1 1215 1329 -248 414 0 0 0 chrX 83634762 83634808 -78965122 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2146 125 21 0 chrX 83634976 83635312 -78964618 - L1PA10 LINE L1 -1 6167 5825 997 98 86 0 chrX 83635528 83635691 -78964239 - L1PA7 LINE L1 -1398 4748 4572 7000 56 7 0 chrX 83635691 83637102 -78962828 + L1PA7 LINE L1 4730 6145 -9 568 194 5 0 chrX 83687102 83687228 -78912702 - L1MB1 LINE L1 -339 5829 5699 698 228 99 24 chrX 83687228 83687439 -78912491 - MIR SINE MIR -5 257 31 426 96 0 0 chrX 83687899 83687972 -78911958 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1286 117 0 6 chrX 83687972 83688151 -78911779 - AluSg/x SINE Alu -27 285 108 1931 239 79 48 chrX 83688203 83688760 -78911170 - MLT1E LTR MaLR -19 574 1 21 0 0 0 chrX 83690237 83690258 -78909672 + AT_rich Low_complexity Low_complexity 1 21 0 1837 132 0 18 chrX 83690274 83690546 -78909384 - MER4A LTR ERV1 -9 655 389 180 0 0 0 chrX 83690548 83690568 -78909362 + (TTG)n Simple_repeat Simple_repeat 2 21 0 270 256 0 51 chrX 83690974 83691052 -78908878 + L2 LINE L2 3230 3303 -10 1454 139 205 30 chrX 83691061 83691398 -78908532 - MER4A LTR ERV1 -267 397 2 2300 97 0 6 chrX 83691667 83691978 -78907952 - AluSx SINE Alu -3 309 1 2142 147 8 8 chrX 83692537 83692890 -78907040 + THE1A LTR MaLR 1 353 -2 10406 108 34 16 chrX 83692890 83694439 -78905491 + THE1A-int LTR MaLR 2 1580 0 2361 118 8 8 chrX 83694439 83694794 -78905136 + THE1A LTR MaLR 1 355 0 2382 284 72 40 chrX 83694980 83695958 -78903972 + L1M3 LINE L1 4 1012 -4879 2257 237 70 7 chrX 83695980 83696751 -78903179 + L1M3 LINE L1 2347 3166 -2804 * 4486 215 28 14 chrX 83696738 83697818 -78902112 + L1M3 LINE L1 3387 4481 -1489 10227 231 23 48 chrX 83699164 83701232 -78898698 + L1PA16 LINE L1 712 2831 -3392 4470 43 4 0 chrX 83701232 83701789 -78898141 + L1PA7 LINE L1 5594 6152 -2 10227 231 23 48 chrX 83701789 83704444 -78895486 + L1PA16 LINE L1 2831 5386 -837 1796 153 25 69 chrX 83704444 83704836 -78895094 + THE1C LTR MaLR 1 375 0 10227 231 23 48 chrX 83704836 83705638 -78894292 + L1PA16 LINE L1 5386 6207 -16 2795 218 16 14 chrX 83705660 83706794 -78893136 + L1M3 LINE L1 4467 5607 -385 * 2859 201 11 20 chrX 83706792 83707404 -78892526 + L1MB1 LINE L1 5340 5946 -222 1734 302 25 25 chrX 83707472 83708183 -78891747 + L1PB2 LINE L1 469 1179 -5684 6704 234 96 19 chrX 83708197 83713166 -78886764 + L1PB2 LINE L1 1407 6866 -1 206 105 53 35 chrX 83713169 83713186 -78886744 + A-rich Low_complexity Low_complexity 3 18 -42 1009 221 4 4 chrX 83713186 83713412 -78886518 + L1MB1 LINE L1 5936 6161 -7 206 105 53 35 chrX 83713412 83713451 -78886479 + A-rich Low_complexity Low_complexity 18 60 0 247 319 0 0 chrX 83714626 83714717 -78885213 + T-rich Low_complexity Low_complexity 1 91 0 424 195 0 35 chrX 83714902 83714989 -78884941 + L2 LINE L2 3188 3271 -42 342 307 26 9 chrX 83714955 83715069 -78884861 - MER5A DNA MER1_type -67 122 7 * 1158 122 0 0 chrX 83715273 83715453 -78884477 + (TA)n Simple_repeat Simple_repeat 1 180 0 2397 132 75 10 chrX 83715660 83716062 -78883868 + MSTA LTR MaLR 1 428 0 248 342 61 18 chrX 83718293 83718407 -78881523 - MIR SINE MIR -121 141 23 4864 164 16 42 chrX 83718480 83719468 -78880462 + LTR5 LTR ERVK 1 963 -6 226 292 52 52 chrX 83719518 83719614 -78880316 - MIR3 SINE MIR -15 193 98 576 314 77 4 chrX 83720175 83720387 -78879543 - MIR SINE MIR -21 241 21 2063 134 150 5 chrX 83721022 83721396 -78878534 + MSTA LTR MaLR 1 428 0 7171 186 14 82 chrX 83721398 83721982 -78877948 + MSTA-int LTR MaLR 3 625 -955 605 63 0 0 chrX 83721982 83722061 -78877869 + MADE1 DNA Mariner 1 79 -1 7171 186 14 82 chrX 83722061 83723092 -78876838 + MSTA-int LTR MaLR 625 1580 0 1640 163 169 5 chrX 83723092 83723460 -78876470 + MSTA LTR MaLR 1 428 0 13049 196 14 16 chrX 83723914 83727952 -78871978 + L1PB2 LINE L1 2119 6149 -2 268 257 0 0 chrX 83728477 83728547 -78871383 + MIR SINE MIR 183 252 -10 3547 175 44 42 chrX 83729390 83730168 -78869762 + LTR19C LTR ERV1 1 779 0 2930 287 57 16 chrX 83730388 83731769 -78868161 - L2 LINE L2 0 3313 1753 22 0 0 0 chrX 83731779 83731801 -78868129 + AT_rich Low_complexity Low_complexity 1 22 0 188 222 32 32 chrX 83732112 83732175 -78867755 + L2 LINE L2 1810 1872 -1442 185 346 163 7 chrX 83732540 83732693 -78867237 + MIR3 SINE MIR 19 195 -13 7798 39 1 1 chrX 83732916 83733868 -78866062 - L1P LINE L1 -1454 4692 3741 7444 34 6 0 chrX 83733868 83735289 -78864641 + L1PA4 LINE L1 4727 6152 -3 435 233 86 45 chrX 83735348 83735532 -78864398 - MLT1J2 LTR MaLR 0 423 260 949 113 7 13 chrX 83735572 83735723 -78864207 - L1PA15 LINE L1 -15 6150 6001 1614 259 71 4 chrX 83735724 83736191 -78863739 - LTR40a LTR ERVL -17 502 5 442 291 79 24 chrX 83736483 83736648 -78863282 - MIR SINE MIR -61 201 28 328 203 0 0 chrX 83736744 83736807 -78863123 + MLT2C1 LTR ERVL 1 63 -334 11740 152 17 13 chrX 83736807 83738249 -78861681 - Tigger1 DNA MER2_type 0 2418 964 2193 113 0 0 chrX 83738249 83738572 -78861358 + AluSc SINE Alu 1 309 0 11740 152 17 13 chrX 83738572 83739145 -78860785 - Tigger1 DNA MER2_type -1454 964 395 745 106 80 15 chrX 83739145 83739366 -78860564 - L1P4 LINE L1 -571 5597 5329 * 4778 136 47 7 chrX 83739361 83740338 -78859592 - L1PB3 LINE L1 0 6154 5149 * 7662 229 11 8 chrX 83740305 83742233 -78857697 - L1PB3 LINE L1 -1514 4632 2698 1390 96 0 0 chrX 83742236 83742413 -78857517 - AluSq SINE Alu -70 243 67 1716 124 4 4 chrX 83742413 83742452 -78857478 - L1PA16 LINE L1 -188 5978 5940 2365 177 32 8 chrX 83742452 83743092 -78856838 - L1MA9 LINE L1 -374 5938 5264 1229 283 55 19 chrX 83743092 83743980 -78855950 + ERVL LTR ERVL 25 1063 -4544 1094 245 0 0 chrX 83743999 83744215 -78855715 + ERVL LTR ERVL 1350 1565 -4199 * 9015 231 29 35 chrX 83744214 83746353 -78853577 + ERVL LTR ERVL 3020 5145 -619 2637 254 51 10 chrX 83746353 83747043 -78852887 - L1M4 LINE L1 -2987 3395 2621 225 0 0 0 chrX 83747043 83747068 -78852862 + (TA)n Simple_repeat Simple_repeat 1 25 0 2637 254 51 10 chrX 83747068 83747637 -78852293 - L1M4 LINE L1 -3761 2621 2077 254 93 94 3 chrX 83747649 83747708 -78852222 + MLT2B1 LTR ERVL 455 520 0 218 269 19 0 chrX 83747775 83747827 -78852103 - MIR SINE MIR -114 148 96 323 312 25 33 chrX 83748104 83748283 -78851647 + LTR16B LTR ERVL 262 464 0 21 57 0 0 chrX 83749646 83749681 -78850249 + AT_rich Low_complexity Low_complexity 1 35 0 1077 269 79 8 chrX 83750200 83750568 -78849362 - MSTD LTR MaLR -2 394 1 5861 271 40 35 chrX 83750568 83750691 -78849239 - MSTD-int LTR MaLR 0 1735 1614 7494 32 0 1 chrX 83750691 83752235 -78847695 - L1PA3 LINE L1 -5 6150 4608 5861 271 40 35 chrX 83752235 83752249 -78847681 - MSTD-int LTR MaLR -121 1614 1602 1624 192 11 7 chrX 83752249 83752536 -78847394 + AluJo SINE Alu 1 288 -24 5861 271 40 35 chrX 83752536 83754122 -78845808 - MSTD-int LTR MaLR -133 1602 2 280 185 0 0 chrX 83754124 83754178 -78845752 - MSTD LTR MaLR 0 396 343 6906 65 3 1 chrX 83754193 83755643 -78844287 - L1PA7 LINE L1 -15 6139 4689 11179 109 0 5 chrX 83755643 83757328 -78842602 + L1P LINE L1 2282 3957 -2189 1276 241 75 12 chrX 83757328 83757660 -78842270 - MSTD LTR MaLR -38 358 6 307 232 37 37 chrX 83758188 83758270 -78841660 + L2 LINE L2 3229 3310 -3 1092 246 81 3 chrX 83758440 83758725 -78841205 - MER58B DNA MER1_type -34 307 1 1242 208 90 48 chrX 83759679 83760135 -78839795 + Charlie4a DNA MER1_type 19 493 -15 2122 138 0 3 chrX 83760576 83760887 -78839043 + AluSx SINE Alu 3 312 0 410 277 109 55 chrX 83761572 83761774 -78838156 + MLT1I LTR MaLR 197 409 0 21 71 0 0 chrX 83761921 83761963 -78837967 + AT_rich Low_complexity Low_complexity 1 42 0 225 180 0 0 chrX 83764111 83764161 -78835769 + GA-rich Low_complexity Low_complexity 2 51 0 232 313 50 61 chrX 83764939 83765038 -78834892 + MER5A DNA MER1_type 64 161 -28 201 257 86 43 chrX 83765400 83765470 -78834460 + MER5A DNA MER1_type 43 115 -74 414 0 0 0 chrX 83765474 83765520 -78834410 + (CA)n Simple_repeat Simple_repeat 2 47 0 210 37 0 0 chrX 83766195 83766222 -78833708 + (TG)n Simple_repeat Simple_repeat 2 28 0 1317 267 53 69 chrX 83766253 83766833 -78833097 + L1MC3 LINE L1 6 576 -5469 810 264 34 78 chrX 83766899 83767279 -78832651 + L1MC3 LINE L1 553 913 -5132 954 236 117 89 chrX 83767279 83767818 -78832112 - MER41C LTR ERV1 0 554 1 810 264 34 78 chrX 83767818 83767873 -78832057 + L1MC3 LINE L1 913 969 -5076 3006 166 83 35 chrX 83767882 83768567 -78831363 - LTR8A LTR ERV1 0 727 10 1572 245 87 32 chrX 83768576 83769221 -78830709 + L1MC3 LINE L1 1186 1977 -4587 2135 164 8 16 chrX 83769225 83769604 -78830326 - MER50 LTR ERV1 -24 710 335 3011 247 31 14 chrX 83769606 83770984 -78828946 + L1MC3 LINE L1 4748 6156 -746 4987 211 40 22 chrX 83771010 83771249 -78828681 + L1MC3 LINE L1 6788 7021 -1182 1762 123 0 0 chrX 83771249 83771529 -78828401 + AluSg SINE Alu 37 316 0 4987 211 40 22 chrX 83771529 83772435 -78827495 + L1MC3 LINE L1 7021 7960 -243 1937 210 0 3 chrX 83772435 83772801 -78827129 - MLT1A1 LTR MaLR 0 365 1 4987 211 40 22 chrX 83772801 83772877 -78827053 + L1MC3 LINE L1 7960 8033 -170 237 33 0 0 chrX 83772879 83772909 -78827021 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chrX 83773194 83773222 -78826708 + AT_rich Low_complexity Low_complexity 1 28 0 197 333 13 0 chrX 83774264 83774342 -78825588 - MIR SINE MIR -108 154 76 200 338 0 0 chrX 83776100 83776168 -78823762 - MIR SINE MIR -1 261 194 736 270 84 14 chrX 83776302 83776517 -78823413 + MIR SINE MIR 13 242 -20 456 367 67 0 chrX 83776609 83776819 -78823111 + Charlie8 DNA MER1_type 2 225 -2192 3483 134 9 0 chrX 83776819 83777452 -78822478 + L1PA8A LINE L1 4812 5448 -683 479 296 40 80 chrX 83777521 83777635 -78822295 + L1MC4a LINE L1 5415 5532 -2276 5609 24 3 0 chrX 83777635 83778294 -78821636 - L1PA4 LINE L1 -3 6152 5492 479 296 40 80 chrX 83778294 83778682 -78821248 + L1MC4a LINE L1 5532 5897 -1911 4109 127 15 5 chrX 83778922 83779584 -78820346 + L1PA16 LINE L1 5489 6157 -9 22522 25 0 0 chrX 83779625 83783072 -78816858 - L1PA2 LINE L1 0 6155 2709 24 32 0 0 chrX 83783133 83783164 -78816766 + AT_rich Low_complexity Low_complexity 1 31 0 663 315 48 66 chrX 83783355 83783854 -78816076 + MLT1J LTR MaLR 4 493 -18 24 32 0 0 chrX 83784017 83784048 -78815882 + AT_rich Low_complexity Low_complexity 1 31 0 554 252 7 28 chrX 83784102 83784219 -78815711 + Tigger3(Golem) DNA MER2_type 3 118 -1113 1917 123 151 3 chrX 83784219 83784536 -78815394 + THE1B LTR MaLR 1 364 0 554 252 7 28 chrX 83784536 83784561 -78815369 + Tigger3(Golem) DNA MER2_type 118 142 -1089 * 1519 149 8 30 chrX 83784558 83784820 -78815110 + Tigger3(Golem) DNA MER2_type 2781 3036 0 12294 191 35 74 chrX 83784919 83789228 -78810702 + L1M1 LINE L1 25 3959 -3046 2217 87 0 50 chrX 83789228 83789550 -78810380 + AluY SINE Alu 1 306 -5 12294 191 35 74 chrX 83789550 83791990 -78807940 + L1M1 LINE L1 3959 6495 -510 5736 135 9 19 chrX 83792003 83793140 -78806790 + L1PB2 LINE L1 5023 6149 -2 707 323 77 30 chrX 83793208 83793768 -78806162 - L1MEc LINE L1 -5743 653 68 906 201 27 22 chrX 83794655 83794667 -78805263 - MER5A DNA MER1_type -3 186 176 2040 118 21 0 chrX 83794667 83794954 -78804976 - AluSx SINE Alu -19 293 1 906 201 27 22 chrX 83794954 83795125 -78804805 - MER5A DNA MER1_type -13 176 2 315 290 20 0 chrX 83795147 83795247 -78804683 + L1M4 LINE L1 4946 5047 -1099 1551 226 0 3 chrX 83795272 83795582 -78804348 - L1PA15 LINE L1 -5 6160 5852 782 113 24 0 chrX 83795583 83795707 -78804223 - L1P4 LINE L1 -713 5452 5326 5327 224 22 8 chrX 83795708 83797040 -78802890 + L1P LINE L1 3071 4421 -1725 2062 204 2 0 chrX 83797044 83797476 -78802454 + L1P LINE L1 4842 5274 -872 370 182 0 23 chrX 83797488 83797576 -78802354 + L1M4 LINE L1 5080 5165 -981 2028 253 73 13 chrX 83797594 83799155 -78800775 + L1MB4 LINE L1 1306 3055 -3327 841 160 65 0 chrX 83799172 83799341 -78800589 + L1MA9 LINE L1 6090 6269 -43 25 31 0 0 chrX 83799342 83799374 -78800556 + AT_rich Low_complexity Low_complexity 1 32 0 4999 161 2 9 chrX 83799413 83800632 -78799298 - L1PA16 LINE L1 -2 6164 4939 1439 224 6 6 chrX 83800638 83800960 -78798970 + L1PA16 LINE L1 4615 4936 -1210 1506 201 3 136 chrX 83800998 83801351 -78798579 - MLT2D LTR ERVL -10 387 82 433 83 0 0 chrX 83801355 83801415 -78798515 - L1PA10 LINE L1 -709 5452 5393 4885 78 8 3 chrX 83801415 83802078 -78797852 + L1PA10 LINE L1 5483 6149 -19 180 0 0 0 chrX 83802078 83802098 -78797832 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 339 256 33 0 chrX 83802102 83802192 -78797738 - MLT2D LTR ERVL -304 93 1 3686 238 34 20 chrX 83802198 83802966 -78796964 + L1MB4 LINE L1 4879 5635 -781 13354 162 33 3 chrX 83802966 83805311 -78794619 + Tigger1 DNA MER2_type 2 2418 0 3686 238 34 20 chrX 83805311 83806059 -78793871 + L1MB4 LINE L1 5635 6409 -7 255 380 31 36 chrX 83806069 83806293 -78793637 - LTR67 LTR ERVL -84 473 251 512 233 50 19 chrX 83806387 83806546 -78793384 + MER104 DNA Tc2 14 177 -3 284 329 185 28 chrX 83806833 83807049 -78792881 - L3 LINE CR1 -901 676 427 613 315 15 15 chrX 83807165 83807368 -78792562 + MIR SINE MIR 1 203 -59 251 150 0 0 chrX 83811855 83811895 -78788035 - MIR SINE MIR -11 251 212 225 279 25 25 chrX 83812033 83812112 -78787818 + L2 LINE L2 1876 1954 -1360 362 266 53 0 chrX 83812173 83812267 -78787663 + MLT1H LTR MaLR 445 543 -6 1666 185 137 8 chrX 83812318 83812697 -78787233 + MSTA LTR MaLR 1 428 0 7288 156 17 35 chrX 83812700 83814010 -78785920 + MSTA-int LTR MaLR 4 1289 -291 4786 121 23 56 chrX 83814011 83814872 -78785058 - MER4D LTR ERV1 -37 835 3 769 268 39 8 chrX 83814890 83815144 -78784786 - MIR SINE MIR 0 262 1 385 313 35 9 chrX 83815956 83816071 -78783859 + L2 LINE L2 3196 3313 0 24 32 0 0 chrX 83816233 83816264 -78783666 + AT_rich Low_complexity Low_complexity 1 31 0 698 285 26 18 chrX 83816883 83817111 -78782819 - MIR SINE MIR -11 251 22 2161 130 0 0 chrX 83817516 83817809 -78782121 - AluSg SINE Alu -17 293 1 32 0 0 0 chrX 83817811 83817843 -78782087 + AT_rich Low_complexity Low_complexity 1 32 0 234 0 0 0 chrX 83818218 83818244 -78781686 + (CA)n Simple_repeat Simple_repeat 2 27 0 1856 165 0 20 chrX 83818301 83818598 -78781332 - AluSx SINE Alu -19 293 3 637 294 142 0 chrX 83818641 83818923 -78781007 - MER5C DNA MER1_type -1 323 2 291 340 90 0 chrX 83819829 83819929 -78780001 - L2 LINE L2 -10 3303 3195 507 237 24 81 chrX 83819967 83820178 -78779752 + HsTC2 DNA Tc2 3 201 -1697 735 267 34 78 chrX 83820318 83820613 -78779317 + HsTC2 DNA Tc2 1012 1453 -445 3682 43 0 0 chrX 83820613 83821057 -78778873 + L1PA6 LINE L1 5700 6143 -11 735 267 34 78 chrX 83821057 83821204 -78778726 + HsTC2 DNA Tc2 1453 1605 -293 3242 240 79 29 chrX 83821237 83823194 -78776736 + L1MD2 LINE L1 4292 6346 -13 1157 196 70 24 chrX 83823252 83823593 -78776337 + MER69 DNA AcHobo 2170 2526 0 2315 101 0 0 chrX 83824619 83824926 -78775004 + AluSx SINE Alu 1 307 -5 194 343 15 0 chrX 83825030 83825097 -78774833 - MIR SINE MIR -65 143 76 203 376 128 7 chrX 83827919 83828068 -78771862 - L2 LINE L2 -529 2785 2619 1791 146 11 80 chrX 83828300 83828664 -78771266 + MLT1B LTR MaLR 50 388 -2 6324 158 41 4 chrX 83828848 83830035 -78769895 - Tigger3b DNA MER2_type 0 1231 1 7126 38 0 0 chrX 83830254 83831117 -78768813 - L1PA4 LINE L1 -1 6154 5292 2901 130 47 0 chrX 83832183 83832668 -78767262 - L1PA15 LINE L1 -2 6163 5656 14075 228 21 7 chrX 83832678 83836190 -78763740 - L1PA15 LINE L1 -756 5390 1829 2920 34 0 0 chrX 83836190 83836682 -78763248 + L1P2 LINE L1 5112 5603 -552 501 126 27 108 chrX 83836684 83836754 -78763176 + THE1C LTR MaLR 274 333 -42 2556 39 0 7 chrX 83836754 83837059 -78762871 - AluY SINE Alu -8 303 1 501 126 27 108 chrX 83837059 83837099 -78762831 + THE1C LTR MaLR 333 375 0 2454 139 19 5 chrX 83837099 83837517 -78762413 - MER50-int LTR ERV1 -31 6567 6144 8960 123 63 24 chrX 83837517 83839163 -78760767 - MER50-int LTR ERV1 -1074 5524 3815 3966 137 104 39 chrX 83839222 83840090 -78759840 - MER50-int LTR ERV1 -2965 3633 2822 3641 161 27 45 chrX 83840090 83840794 -78759136 + LTR8 LTR ERV1 1 691 0 3966 137 104 39 chrX 83840794 83841353 -78758577 - MER50-int LTR ERV1 -3776 2822 1266 1080 118 79 26 chrX 83843684 83843912 -78756018 - MER50-int LTR ERV1 -4603 1995 1756 231 61 0 0 chrX 83843930 83843963 -78755967 + (CA)n Simple_repeat Simple_repeat 2 34 0 4728 155 97 14 chrX 83843964 83844848 -78755082 - MER50-int LTR ERV1 -5612 1146 189 1292 247 60 30 chrX 83844847 83845216 -78754714 - MER50-int LTR ERV1 -4107 2224 1845 * 291 223 0 43 chrX 83845263 83845357 -78754573 - MER50-int LTR ERV1 -5758 840 751 2198 101 60 63 chrX 83845413 83845848 -78754082 - MER50-int LTR ERV1 -6010 588 107 1894 214 115 60 chrX 83845862 83846549 -78753381 - MER50 LTR ERV1 0 734 10 420 118 59 0 chrX 83846555 83846623 -78753307 - MER4A-int LTR ERV1 -6526 72 1 1624 138 11 75 chrX 83846626 83846995 -78752935 - MER4A LTR ERV1 0 664 261 619 141 0 10 chrX 83846995 83847094 -78752836 - MER4A LTR ERV1 -566 98 1 23 68 0 0 chrX 83847638 83847682 -78752248 + AT_rich Low_complexity Low_complexity 1 44 0 285 286 57 29 chrX 83847817 83847922 -78752008 - L2 LINE L2 -19 3294 3187 204 288 161 42 chrX 83848099 83848217 -78751713 - MER5B DNA MER1_type -15 163 32 1468 176 104 3 chrX 83848568 83848857 -78751073 + MER4B LTR ERV1 1 318 -292 3829 173 29 7 chrX 83848858 83849547 -78750383 - MER50 LTR ERV1 -23 711 8 1822 139 7 7 chrX 83849568 83849848 -78750082 + MER4E LTR ERV1 500 779 0 1820 293 98 6 chrX 83850004 83850792 -78749138 - L2 LINE L2 -160 3153 2293 28 48 0 0 chrX 83850958 83851000 -78748930 + AT_rich Low_complexity Low_complexity 1 42 0 938 317 23 56 chrX 83852146 83852626 -78747304 - LTR16B LTR ERVL 0 464 1 515 246 48 70 chrX 83852668 83852855 -78747075 - MIR SINE MIR 0 262 80 28 71 0 0 chrX 83853073 83853129 -78746801 + AT_rich Low_complexity Low_complexity 1 56 0 183 306 20 0 chrX 83854088 83854137 -78745793 + MIR SINE MIR 30 79 -129 1433 130 0 14 chrX 83854213 83854429 -78745501 + AluSq SINE Alu 83 295 -18 24 53 0 0 chrX 83854429 83854467 -78745463 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chrX 83854797 83854820 -78745110 + AT_rich Low_complexity Low_complexity 1 23 0 406 306 135 18 chrX 83855539 83855768 -78744162 - MIR SINE MIR -6 256 1 24 0 0 0 chrX 83856556 83856580 -78743350 + AT_rich Low_complexity Low_complexity 1 24 0 2429 45 10 10 chrX 83856713 83857023 -78742907 - AluY SINE Alu -1 310 1 12710 133 14 2 chrX 83857028 83859864 -78740066 - L1PA10 LINE L1 -3 6165 3293 1908 177 53 127 chrX 83861389 83861987 -78737943 + MLT2B3 LTR ERVL 1 554 0 437 351 12 0 chrX 83862950 83863118 -78736812 + L2 LINE L2 2456 2625 -689 198 261 15 31 chrX 83863215 83863280 -78736650 - L3b LINE CR1 -251 1332 1269 460 222 69 13 chrX 83864264 83864389 -78735541 - L1MA9 LINE L1 0 6300 6178 211 316 0 26 chrX 83864593 83864669 -78735261 + CT-rich Low_complexity Low_complexity 6 79 0 2142 83 28 0 chrX 83864910 83865200 -78734730 + AluY SINE Alu 5 302 -9 2253 87 3 7 chrX 83865202 83865511 -78734419 + AluY SINE Alu 3 310 -1 29 0 0 0 chrX 83865635 83865664 -78734266 + AT_rich Low_complexity Low_complexity 1 29 0 379 219 0 0 chrX 83865897 83865970 -78733960 - MIR3 SINE MIR -12 196 124 23 0 0 0 chrX 83866289 83866312 -78733618 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chrX 83866857 83866886 -78733044 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 327 274 9 47 chrX 83866894 83867000 -78732930 - L2 LINE L2 -32 3281 3180 210 384 0 0 chrX 83867172 83867245 -78732685 + L2 LINE L2 2973 3045 -227 9270 199 9 7 chrX 83867441 83870165 -78729765 + L1PA13 LINE L1 3222 5952 -211 2009 104 0 0 chrX 83870155 83870433 -78729497 + L1P LINE L1 3978 4255 -1891 * 459 299 8 0 chrX 83870638 83870772 -78729158 + L2 LINE L2 1950 2084 -1230 186 188 21 62 chrX 83871936 83871984 -78727946 + L2 LINE L2 3235 3280 -33 614 280 19 0 chrX 83872259 83872416 -78727514 + MIR SINE MIR 82 241 -21 195 42 0 0 chrX 83872583 83872607 -78727323 + (TG)n Simple_repeat Simple_repeat 2 25 0 575 278 5 52 chrX 83873713 83873904 -78726026 - MIR SINE MIR 0 262 81 468 281 81 27 chrX 83874099 83874284 -78725646 + MIR SINE MIR 8 202 -60 278 50 25 0 chrX 83874319 83874359 -78725571 + (TTA)n Simple_repeat Simple_repeat 2 42 0 23 33 0 0 chrX 83875974 83876004 -78723926 + AT_rich Low_complexity Low_complexity 1 30 0 1486 184 11 25 chrX 83876011 83876320 -78723610 + AluJb SINE Alu 8 312 0 32 79 0 26 chrX 83876333 83876447 -78723483 + AT_rich Low_complexity Low_complexity 1 111 0 405 293 99 13 chrX 83876451 83876777 -78723153 + L1ME LINE L1 5457 5818 -303 224 265 0 0 chrX 83876777 83876826 -78723104 + (TA)n Simple_repeat Simple_repeat 2 50 0 1286 205 32 4 chrX 83877285 83877534 -78722396 + MSTA LTR MaLR 137 392 -36 375 336 168 0 chrX 83877537 83877686 -78722244 + MER5A DNA MER1_type 9 182 -7 190 274 20 0 chrX 83877756 83877807 -78722123 + MIR SINE MIR 102 153 -109 354 45 0 0 chrX 83878417 83878461 -78721469 + (TG)n Simple_repeat Simple_repeat 2 45 0 311 275 38 36 chrX 83878572 83878711 -78721219 + MIR SINE MIR 62 200 -62 1428 161 77 21 chrX 83878905 83879214 -78720716 + MER1B DNA MER1_type 2 339 0 757 274 85 11 chrX 83879214 83879495 -78720435 + L2 LINE L2 2238 2539 -775 184 260 75 144 chrX 83879782 83879955 -78719975 - L3b LINE CR1 -26 1557 1397 2236 108 0 0 chrX 83880799 83881087 -78718843 + AluSg SINE Alu 1 288 -22 461 260 132 29 chrX 83883505 83883709 -78716221 + MIR SINE MIR 2 226 -36 191 291 0 0 chrX 83883813 83883868 -78716062 + L3 LINE CR1 1521 1575 -2 25 0 0 0 chrX 83884843 83884868 -78715062 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chrX 83885947 83885983 -78713947 + AT_rich Low_complexity Low_complexity 1 36 0 2348 81 3 0 chrX 83886517 83886815 -78713115 - AluSp SINE Alu -14 299 1 1383 206 99 26 chrX 83887001 83887345 -78712585 + MLT1A2 LTR MaLR 5 373 -1 288 53 0 0 chrX 83890245 83890283 -78709647 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chrX 83890315 83890338 -78709592 + AT_rich Low_complexity Low_complexity 1 23 0 605 238 112 36 chrX 83891216 83891439 -78708491 + MIR SINE MIR 23 262 0 444 250 74 57 chrX 83891706 83891882 -78708048 - MIR SINE MIR -50 212 34 21 71 0 0 chrX 83892474 83892516 -78707414 + AT_rich Low_complexity Low_complexity 1 42 0 523 265 117 51 chrX 83893049 83893543 -78706387 - L1MC4 LINE L1 -6 8036 7510 670 226 68 6 chrX 83893546 83893723 -78706207 + LTR41 LTR ERVL 1 188 -585 22 0 0 0 chrX 83893737 83893759 -78706171 + AT_rich Low_complexity Low_complexity 1 22 0 294 275 111 62 chrX 83894047 83894291 -78705639 + LTR41 LTR ERVL 512 767 -6 808 259 119 31 chrX 83894382 83894838 -78705092 - L1MC4 LINE L1 -550 7492 7002 378 303 170 30 chrX 83894891 83895202 -78704728 - L1MC4 LINE L1 -974 7068 6683 709 196 0 23 chrX 83895670 83895803 -78704127 - MSTC LTR MaLR -298 130 1 7089 233 48 38 chrX 83895803 83896817 -78703113 - MLT1A1-int LTR MaLR 0 1735 696 2588 110 6 6 chrX 83896817 83897180 -78702750 + THE1B LTR MaLR 1 363 -1 7089 233 48 38 chrX 83897180 83897883 -78702047 - MLT1A1-int LTR MaLR -1039 696 1 1322 214 5 106 chrX 83897883 83898289 -78701641 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chrX 83898319 83898340 -78701590 + AT_rich Low_complexity Low_complexity 1 21 0 2033 234 72 24 chrX 83898343 83898881 -78701049 - MLT1F1 LTR MaLR -3 564 1 2458 78 10 0 chrX 83899851 83900160 -78699770 + AluSp SINE Alu 1 312 -1 201 261 0 0 chrX 83900519 83900565 -78699365 + CT-rich Low_complexity Low_complexity 1 46 0 188 258 10 0 chrX 83900565 83900662 -78699268 + (TTTA)n Simple_repeat Simple_repeat 4 101 0 837 326 139 21 chrX 83900662 83901322 -78698608 + L2 LINE L2 2575 3313 0 309 197 0 56 chrX 83901557 83901628 -78698302 - L2 LINE L2 -348 2924 2858 219 361 21 31 chrX 83901759 83901856 -78698074 + L2 LINE L2 3197 3292 -21 578 286 30 39 chrX 83902130 83902479 -78697451 - MLT1G3 LTR MaLR -6 536 182 2114 167 31 36 chrX 83902490 83903041 -78696889 + MLT2A1 LTR ERVL 1 554 0 12673 119 11 14 chrX 83903041 83903688 -78696242 + HERVL-A1 LTR ERVL 1 649 -5005 2171 102 0 3 chrX 83903688 83903981 -78695949 - AluSx SINE Alu -18 294 3 12673 119 11 14 chrX 83903981 83905224 -78694706 + HERVL-A1 LTR ERVL 649 1884 -3770 7086 106 9 1 chrX 83905220 83906199 -78693731 + HERVL-A2 LTR ERVL 4668 5654 0 * 1890 192 37 25 chrX 83906199 83906737 -78693193 + MLT2A2 LTR ERVL 1 546 -8 22 0 0 0 chrX 83906959 83906981 -78692949 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrX 83907024 83907066 -78692864 + AT_rich Low_complexity Low_complexity 1 42 0 274 313 27 36 chrX 83907732 83907844 -78692086 + L2 LINE L2 2565 2675 -639 1090 359 80 25 chrX 83908280 83909079 -78690851 + L2 LINE L2 1931 2773 -541 443 327 62 70 chrX 83909138 83909523 -78690407 + L2 LINE L2 2932 3313 0 202 294 0 0 chrX 83909543 83909594 -78690336 - L2 LINE L2 -1 3312 3262 190 272 35 88 chrX 83909881 83909995 -78689935 - MIR SINE MIR -144 118 11 24 0 0 0 chrX 83910627 83910651 -78689279 + AT_rich Low_complexity Low_complexity 1 24 0 1490 201 31 0 chrX 83911032 83911325 -78688605 - L1PA15 LINE L1 -7 6158 5857 2732 127 31 0 chrX 83911325 83911743 -78688187 + MER57B LTR ERV1 1 431 -3 3043 158 52 2 chrX 83911746 83912247 -78687683 + MER57B-int LTR ERV1 1 526 -7011 7766 239 51 16 chrX 83912247 83914546 -78685384 - L1PA13 LINE L1 -2106 4691 2312 2358 239 61 5 chrX 83914568 83914951 -78684979 - L1PA13 LINE L1 -4750 2037 1602 351 0 0 0 chrX 83914951 83914990 -78684940 + (TG)n Simple_repeat Simple_repeat 2 40 0 2358 239 61 5 chrX 83914990 83915245 -78684685 - L1PA13 LINE L1 -5185 1602 1363 2442 323 27 44 chrX 83915372 83916304 -78683626 - L1PA13 LINE L1 -5870 917 2 210 91 0 0 chrX 83916416 83916449 -78683481 + (TTA)n Simple_repeat Simple_repeat 2 34 0 708 292 40 31 chrX 83917023 83917249 -78682681 + MLT2F LTR ERVL 179 406 -257 3230 220 14 2 chrX 83968026 83968648 -78631282 + L1M1 LINE L1 1219 1848 -5717 6090 187 17 20 chrX 83968681 83971007 -78628923 + L1M1 LINE L1 3813 6316 -1249 3711 198 41 20 chrX 83971004 83972350 -78627580 + L1MB1 LINE L1 4396 5779 -389 * 1056 191 13 25 chrX 83972352 83972588 -78627342 + AluJo SINE Alu 1 233 -79 1355 224 33 0 chrX 83972588 83972887 -78627043 + L1MB1 LINE L1 5801 6109 -59 2193 116 6 0 chrX 83973027 83973338 -78626592 - AluSq SINE Alu 0 313 1 30 27 0 0 chrX 83973677 83973714 -78626216 + AT_rich Low_complexity Low_complexity 1 37 0 1865 127 10 10 chrX 83973742 83974069 -78625861 - AluSq SINE Alu 0 327 1 4428 107 23 1 chrX 83974234 83974886 -78625044 - L1PA13 LINE L1 -4 6810 6145 6207 165 18 3 chrX 83974886 83976024 -78623906 - L1PA13 LINE L1 -872 5925 4772 811 216 7 0 chrX 83976013 83976161 -78623769 - L1PA13 LINE L1 -6300 487 339 * 11676 180 18 8 chrX 83976159 83977286 -78622644 - L1PA12 LINE L1 -5577 2004 848 1929 129 37 50 chrX 83977286 83977666 -78622264 + THE1C LTR MaLR 1 375 0 11676 180 18 8 chrX 83977666 83978523 -78621407 - L1PA12 LINE L1 -6733 848 1 4041 253 32 72 chrX 83979107 83979434 -78620496 + L1MC4a LINE L1 5258 5597 -2211 1362 238 108 15 chrX 83979434 83979896 -78620034 - MLT1D LTR MaLR 0 505 1 4041 253 32 72 chrX 83979896 83980241 -78619689 + L1MC4a LINE L1 5597 5954 -1854 3155 85 7 2 chrX 83980241 83980686 -78619244 + L1PA13 LINE L1 5711 6157 -6 4041 253 32 72 chrX 83980686 83981139 -78618791 + L1MC4a LINE L1 5954 6294 -1514 1487 170 72 4 chrX 83981139 83981257 -78618673 + AluJo SINE Alu 3 111 -201 186 43 0 0 chrX 83981257 83981280 -78618650 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1487 170 72 4 chrX 83981280 83981437 -78618493 + AluJo SINE Alu 111 297 -15 4041 253 32 72 chrX 83981437 83982011 -78617919 + L1MC4a LINE L1 6294 6890 -918 3691 78 10 2 chrX 83982011 83982500 -78617430 - MER41A LTR ERV1 -61 493 1 860 200 22 6 chrX 83984537 83984717 -78615213 - MLT1D LTR MaLR 0 505 323 799 267 139 58 chrX 83984742 83985172 -78614758 - MLT1E2 LTR MaLR -17 609 145 251 154 0 19 chrX 83985205 83985257 -78614673 + MLT1D LTR MaLR 85 135 -370 4114 235 37 88 chrX 83985257 83986782 -78613148 - L1MB7 LINE L1 -229 7374 6009 417 205 24 0 chrX 83986782 83986865 -78613065 - Tigger5 DNA MER2_type -1 2322 2238 4114 235 37 88 chrX 83986865 83988288 -78611642 - L1MB7 LINE L1 -1594 6009 4516 2828 126 67 13 chrX 83988296 83988771 -78611159 + MER75 DNA T2_type 2 502 -12 19651 185 27 11 chrX 83988771 83992721 -78607209 - L1MB7 LINE L1 -3532 4033 18 974 306 33 42 chrX 83992710 83993263 -78606667 - L1M4c LINE L1 -3568 3389 2894 * 1376 220 34 0 chrX 83993263 83993443 -78606487 - AluJo SINE Alu -7 305 110 237 33 0 0 chrX 83993443 83993473 -78606457 + (TAG)n Simple_repeat Simple_repeat 1 30 0 1376 220 34 0 chrX 83993473 83993587 -78606343 - AluJo SINE Alu -202 110 1 974 306 33 42 chrX 83993587 83993893 -78606037 - L1M4c LINE L1 -4063 2894 2587 312 27 0 0 chrX 83993963 83994000 -78605930 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chrX 83994203 83994225 -78605705 + AT_rich Low_complexity Low_complexity 1 22 0 4453 275 64 36 chrX 83994233 83996542 -78603388 - L1M4c LINE L1 -4521 2436 5 330 256 106 50 chrX 83996649 83996829 -78603101 - L1MC/D LINE L1 -2035 5773 5584 198 0 0 0 chrX 83996933 83996955 -78602975 + (TA)n Simple_repeat Simple_repeat 1 22 0 553 188 8 0 chrX 83997141 83997258 -78602672 - L1MB5 LINE L1 -7 6665 6548 1266 265 78 3 chrX 83997284 83997590 -78602340 - MLT1A1 LTR MaLR 0 365 37 6105 239 51 21 chrX 83997611 83998432 -78601498 - L1MB5 LINE L1 -147 6525 5731 2186 93 3 7 chrX 83998432 83998733 -78601197 - AluSc SINE Alu -9 300 1 6105 239 51 21 chrX 83998733 84000668 -78599262 - L1MB5 LINE L1 -941 5731 3691 502 278 38 14 chrX 84000685 84000897 -78599033 - L1MB5 LINE L1 -6324 218 2 25 0 0 0 chrX 84002610 84002635 -78597295 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chrX 84002938 84002968 -78596962 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrX 84003236 84003272 -78596658 + AT_rich Low_complexity Low_complexity 1 36 0 6193 92 18 6 chrX 84003517 84004414 -78595516 + L1PA14 LINE L1 5254 6161 0 416 261 26 65 chrX 84004531 84004684 -78595246 - L2 LINE L2 0 3313 3167 3201 234 65 34 chrX 84005214 84006544 -78593386 + L1M4 LINE L1 5 1416 -5126 842 261 40 26 chrX 84006557 84006829 -78593101 + L1ME2 LINE L1 5781 6056 -108 407 119 0 0 chrX 84006830 84006889 -78593041 + AluJ/FLAM SINE Alu 18 76 -236 2563 35 0 10 chrX 84006999 84007313 -78592617 - AluYb8 SINE Alu -7 311 1 407 370 43 18 chrX 84007434 84007710 -78592220 - HERVL LTR ERVL -3582 2072 1790 813 371 34 28 chrX 84007826 84008470 -78591460 - HERVL LTR ERVL -4335 661 14 518 300 126 17 chrX 84008483 84008713 -78591217 - LTR16B LTR ERVL 0 464 210 270 283 33 17 chrX 84008736 84008856 -78591074 + L1M4 LINE L1 1708 1829 -4996 180 0 0 0 chrX 84008858 84008878 -78591052 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4087 118 41 20 chrX 84008881 84009567 -78590363 + L1PB4 LINE L1 5309 6008 -148 3872 228 42 39 chrX 84009568 84010759 -78589171 - L1MD2 LINE L1 0 6619 5420 180 0 0 0 chrX 84010759 84010779 -78589151 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3872 228 42 39 chrX 84010779 84011326 -78588604 - L1MD2 LINE L1 -1199 5420 4876 353 100 0 17 chrX 84011340 84011400 -78588530 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 344 218 15 38 chrX 84011402 84011535 -78588395 - L1MD2 LINE L1 -4042 2364 2235 1116 301 45 8 chrX 84011590 84011945 -78587985 - L1MD2 LINE L1 -5954 455 88 2031 29 0 0 chrX 84011962 84012200 -78587730 - AluY SINE Alu -29 282 45 262 56 0 0 chrX 84012201 84012237 -78587693 + Alu SINE Alu 6 41 -259 316 286 0 0 chrX 84012240 84012317 -78587613 - L1MD2 LINE L1 -6323 86 10 2715 154 13 8 chrX 84013573 84014047 -78585883 - L1MA4 LINE L1 -364 5936 5461 1679 167 3 3 chrX 84014057 84014356 -78585574 - L1PA15 LINE L1 -2 6163 5865 6522 22 0 1 chrX 84014362 84015120 -78584810 + L1PA3 LINE L1 5396 6152 -3 268 182 0 0 chrX 84015139 84015183 -78584747 + AluSp/q SINE Alu 225 268 -35 3437 169 20 2 chrX 84015202 84015932 -78583998 - L1PA15 LINE L1 -305 5860 5120 2184 245 46 26 chrX 84016380 84016992 -78582938 + MLT1E2 LTR MaLR 1 624 -2 347 291 63 68 chrX 84017695 84017901 -78582029 - L2 LINE L2 -5 3308 3104 380 315 8 31 chrX 84017924 84018051 -78581879 + L2 LINE L2 2963 3086 -227 25 0 0 0 chrX 84018541 84018566 -78581364 + AT_rich Low_complexity Low_complexity 1 25 0 339 96 0 0 chrX 84019136 84019188 -78580742 + (TG)n Simple_repeat Simple_repeat 1 52 0 33 66 0 0 chrX 84019634 84019695 -78580235 + AT_rich Low_complexity Low_complexity 1 61 0 538 233 43 31 chrX 84019971 84020134 -78579796 + L1MC4 LINE L1 6450 6614 -1428 1905 259 126 14 chrX 84020194 84020425 -78579505 + MLT1E1 LTR MaLR 1 205 -449 1785 172 27 55 chrX 84020425 84020826 -78579104 + MLT1B LTR MaLR 1 390 0 1905 259 126 14 chrX 84020826 84021182 -78578748 + MLT1E1 LTR MaLR 205 654 0 799 254 65 14 chrX 84021195 84021486 -78578444 + L1MC4 LINE L1 7494 7799 -243 233 204 0 0 chrX 84021573 84021627 -78578303 + L1MC4 LINE L1 7989 8042 0 438 190 40 10 chrX 84021753 84021853 -78578077 + L1M4b LINE L1 5 107 -6752 747 299 75 12 chrX 84021864 84022105 -78577825 + L1M4b LINE L1 153 408 -6451 1966 211 98 36 chrX 84022227 84022311 -78577619 + L1M4b LINE L1 893 970 -5889 2091 113 0 3 chrX 84022311 84022643 -78577287 + AluSq SINE Alu 1 331 0 1966 211 98 36 chrX 84022643 84023088 -78576842 + L1M4b LINE L1 970 1456 -5403 610 253 57 2 chrX 84023088 84023476 -78576454 + L1M4b LINE L1 2277 2776 -4183 * 745 279 67 28 chrX 84023470 84023831 -78576099 + L1M4 LINE L1 1706 2182 -4775 2143 99 0 3 chrX 84023965 84024247 -78575683 - AluSx SINE Alu -31 281 1 280 333 63 36 chrX 84024550 84024661 -78575269 + MIR SINE MIR 37 150 -58 25 0 0 0 chrX 84024693 84024718 -78575212 + AT_rich Low_complexity Low_complexity 1 25 0 5747 166 27 52 chrX 84024718 84025091 -78574839 - L1PB3 LINE L1 -2 6152 5771 735 12 0 0 chrX 84025091 84025175 -78574755 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 2133 104 4 0 chrX 84025175 84025453 -78574477 - AluSc SINE Alu -28 281 3 5747 166 27 52 chrX 84025453 84027414 -78572516 - L1PB3 LINE L1 -381 5773 3883 1757 297 39 37 chrX 84027438 84028368 -78571562 - L1MEc LINE L1 -5420 976 45 22 0 0 0 chrX 84028599 84028621 -78571309 + AT_rich Low_complexity Low_complexity 1 22 0 235 232 0 18 chrX 84028821 84028877 -78571053 - MER5A DNA MER1_type -116 73 19 2113 110 0 23 chrX 84029042 84029387 -78570543 - AluSg SINE Alu 0 310 1 2318 56 0 18 chrX 84029735 84030021 -78569909 + AluY SINE Alu 1 281 -30 1277 110 0 0 chrX 84030121 84030294 -78569636 + AluSp SINE Alu 132 304 -9 3541 107 19 19 chrX 84030305 84030827 -78569103 - MER4C-int LTR ERV1 -6189 569 48 1480 145 57 39 chrX 84030871 84031154 -78568776 - MER4C LTR ERV1 0 465 178 250 250 50 20 chrX 84031360 84031460 -78568470 + LTR30 LTR ERV1 541 643 -79 493 165 33 11 chrX 84031466 84031557 -78568373 + LTR12 LTR ERV1 486 578 -136 1254 72 17 6 chrX 84031560 84031740 -78568190 - MER4C LTR ERV1 -283 182 1 3027 190 62 22 chrX 84031751 84032442 -78567488 - LTR8A LTR ERV1 -8 719 1 490 250 41 41 chrX 84032442 84032614 -78567316 - HUERS-P1 LTR ERV1 0 6263 6092 1106 169 84 37 chrX 84032708 84032981 -78566949 - HUERS-P1 LTR ERV1 -132 6199 5914 1507 184 16 25 chrX 84033003 84033324 -78566606 - HUERS-P1 LTR ERV1 -541 5790 5473 3157 89 9 9 chrX 84033327 84033775 -78566155 - LTR7 LTR ERV1 -2 448 1 1979 126 22 44 chrX 84033775 84034140 -78565790 - MER50-int LTR ERV1 -1421 5784 5428 1510 185 8 4 chrX 84034141 84034400 -78565530 - MER50 LTR ERV1 -23 711 452 315 214 0 78 chrX 84034417 84034520 -78565410 + L1PBa LINE L1 1488 1582 -5281 4617 133 25 30 chrX 84034520 84035331 -78564599 - MER11C LTR ERVK 0 1071 265 384 22 0 0 chrX 84035496 84035541 -78564389 + (TG)n Simple_repeat Simple_repeat 1 45 0 1364 256 37 58 chrX 84035713 84036197 -78563733 + MER74B LTR ERVL 75 548 -74 2375 101 56 0 chrX 84036221 84036578 -78563352 + MER51B LTR ERV1 1 377 0 24 53 0 0 chrX 84036724 84036762 -78563168 + AT_rich Low_complexity Low_complexity 1 38 0 335 323 40 16 chrX 84036828 84036952 -78562978 - L2 LINE L2 -208 3064 2938 30 27 0 0 chrX 84037551 84037588 -78562342 + AT_rich Low_complexity Low_complexity 1 37 0 1984 192 8 8 chrX 84038636 84039026 -78560904 - MLT1B LTR MaLR 0 390 1 2354 87 3 0 chrX 84039184 84039484 -78560446 + AluY SINE Alu 1 301 -10 21 36 0 0 chrX 84039596 84039624 -78560306 + AT_rich Low_complexity Low_complexity 1 28 0 270 136 0 0 chrX 84040325 84040369 -78559561 + (TAA)n Simple_repeat Simple_repeat 2 45 0 724 184 12 31 chrX 84040526 84040689 -78559241 + THE1C LTR MaLR 216 375 0 9028 157 9 40 chrX 84040694 84042320 -78557610 + THE1C-int LTR MaLR 6 1580 0 1692 168 60 30 chrX 84042320 84042684 -78557246 + THE1C LTR MaLR 1 375 0 189 74 0 0 chrX 84042821 84042848 -78557082 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 21 71 0 0 chrX 84043445 84043487 -78556443 + AT_rich Low_complexity Low_complexity 1 42 0 321 118 0 0 chrX 84044251 84044302 -78555628 + (CTA)n Simple_repeat Simple_repeat 3 53 0 403 293 94 17 chrX 84044403 84044584 -78555346 - MIR SINE MIR -5 257 63 8330 97 0 1 chrX 84044642 84045808 -78554122 - L1P LINE L1 -1151 4995 3831 6818 62 3 11 chrX 84045808 84046851 -78553079 + L1PA7 LINE L1 5114 6149 -5 2079 164 33 3 chrX 84047272 84047662 -78552268 + L1MA8 LINE L1 5889 6290 -1 1760 162 0 49 chrX 84047705 84048013 -78551917 + AluJb SINE Alu 1 293 -19 180 0 0 0 chrX 84048015 84048035 -78551895 + (TA)n Simple_repeat Simple_repeat 2 21 0 547 292 65 28 chrX 84048098 84048487 -78551443 - L1ME4a LINE L1 -254 5867 5467 473 155 0 72 chrX 84049123 84049317 -78550613 + (TA)n Simple_repeat Simple_repeat 1 180 0 2372 79 0 0 chrX 84049343 84049634 -78550296 - AluY SINE Alu -20 291 1 227 254 0 15 chrX 84049916 84049983 -78549947 - MLT1K LTR MaLR 0 588 523 2350 94 3 0 chrX 84049989 84050296 -78549634 + AluSp SINE Alu 1 308 -5 243 370 43 22 chrX 84050665 84050803 -78549127 - MLT1K LTR MaLR -304 284 144 510 189 0 0 chrX 84050939 84051029 -78548901 - L1M1 LINE L1 -7407 158 69 382 245 79 43 chrX 84051052 84051191 -78548739 + MLT1D LTR MaLR 141 284 -221 9168 208 43 21 chrX 84051198 84051759 -78548171 + L1M1 LINE L1 917 1464 -6101 2079 116 7 0 chrX 84051759 84052051 -78547879 + AluSc SINE Alu 1 294 -15 9168 208 43 21 chrX 84052051 84053387 -78546543 + L1M1 LINE L1 1464 2855 -4710 552 250 0 0 chrX 84053405 84053521 -78546409 - FLAM_C SINE Alu -27 116 1 3737 185 27 32 chrX 84053523 84054947 -78544983 + L1M1 LINE L1 2848 4262 -3303 1985 146 33 0 chrX 84054959 84055084 -78544846 + AluSx SINE Alu 1 120 -192 239 0 0 31 chrX 84055084 84055116 -78544814 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1985 146 33 0 chrX 84055116 84055291 -78544639 + AluSx SINE Alu 120 311 -1 1241 114 5 10 chrX 84055419 84055612 -78544318 - AluSx SINE Alu -120 192 1 611 250 86 32 chrX 84055612 84055678 -78544252 + L1M4 LINE L1 4085 4146 -2000 180 0 0 0 chrX 84055678 84055698 -78544232 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 611 250 86 32 chrX 84055698 84055911 -78544019 + L1M4 LINE L1 4146 4379 -1767 1065 199 7 49 chrX 84055915 84056109 -78543821 + L1MB8 LINE L1 5905 6085 -93 1098 218 95 6 chrX 84056109 84056425 -78543505 + MER2 DNA MER2_type 1 344 0 1065 199 7 49 chrX 84056425 84056516 -78543414 + L1MB8 LINE L1 6085 6178 0 1676 171 4 11 chrX 84056762 84057043 -78542887 + MER50 LTR ERV1 433 711 -23 1133 45 0 8 chrX 84057570 84057704 -78542226 + AluSq/x SINE Alu 1 133 -180 180 0 0 0 chrX 84057704 84057724 -78542206 + (A)n Simple_repeat Simple_repeat 1 20 0 506 191 86 57 chrX 84057862 84058071 -78541859 - L1MC/D LINE L1 -2320 5488 5274 21 36 0 0 chrX 84058270 84058298 -78541632 + AT_rich Low_complexity Low_complexity 1 28 0 330 288 68 36 chrX 84058298 84058576 -78541354 - L1MC/D LINE L1 -1127 5019 4733 2068 127 3 3 chrX 84058902 84059194 -78540736 + AluSg SINE Alu 1 292 -18 1696 214 55 21 chrX 84059355 84059882 -78540048 + L1M1 LINE L1 4269 4813 -2752 * 4072 158 9 4 chrX 84059874 84061213 -78538717 + L1P5 LINE L1 4451 5791 -360 238 130 0 0 chrX 84061216 84061262 -78538668 - LTR66 LTR ERVL -171 439 394 21 0 0 0 chrX 84061266 84061287 -78538643 + AT_rich Low_complexity Low_complexity 1 21 0 227 125 0 0 chrX 84061287 84061319 -78538611 - L1P5 LINE L1 -341 5813 5782 * 243 224 35 24 chrX 84061309 84061394 -78538536 - L1MC4 LINE L1 -1340 6702 6617 291 54 0 0 chrX 84061394 84061431 -78538499 + (CA)n Simple_repeat Simple_repeat 1 37 0 226 104 0 0 chrX 84061431 84061479 -78538451 - LTR66 LTR ERVL -169 441 394 1759 108 8 8 chrX 84061581 84061849 -78538081 + L1PB1 LINE L1 5881 6148 -3 2097 217 64 68 chrX 84061860 84062068 -78537862 + L1M1 LINE L1 4789 4996 -2569 1654 164 68 18 chrX 84062068 84062349 -78537581 + AluJb SINE Alu 6 300 -12 2097 217 64 68 chrX 84062349 84062925 -78537005 + L1M1 LINE L1 4996 5570 -1995 3109 179 10 16 chrX 84063025 84063646 -78536284 - L1MA4A LINE L1 -312 5991 5375 238 221 47 0 chrX 84063662 84063748 -78536182 + L1MC4 LINE L1 6614 6703 -1339 306 194 0 0 chrX 84063748 84063810 -78536120 + (TA)n Simple_repeat Simple_repeat 2 63 0 1058 201 16 12 chrX 84063810 84064059 -78535871 - L1MA4A LINE L1 -762 5384 5135 2491 203 19 19 chrX 84064127 84064600 -78535330 + MER70B LTR ERVL 4 476 -102 2168 101 24 3 chrX 84064981 84065277 -78534653 + AluSq SINE Alu 1 302 -11 26 30 0 0 chrX 84065286 84065319 -78534611 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chrX 84065395 84065430 -78534500 + AT_rich Low_complexity Low_complexity 1 35 0 2033 332 46 38 chrX 84066142 84067167 -78532763 - HERV16 LTR ERVL -1903 3093 2349 1970 141 12 97 chrX 84067167 84067347 -78532583 + MLT1B LTR MaLR 1 195 -195 2092 119 3 0 chrX 84067347 84067641 -78532289 + AluSq SINE Alu 1 295 -18 1970 141 12 97 chrX 84067641 84067885 -78532045 + MLT1B LTR MaLR 195 389 -1 2033 332 46 38 chrX 84067885 84067998 -78531932 - HERV16 LTR ERVL -2647 2349 2238 1023 96 0 0 chrX 84068129 84068265 -78531665 - MER11B LTR ERVK -1100 136 1 5782 180 45 28 chrX 84068267 84069230 -78530700 + L1PB3 LINE L1 1 946 -5257 1055 199 6 63 chrX 84069230 84069546 -78530384 - AluSx SINE Alu -4 298 1 5782 180 45 28 chrX 84069546 84070986 -78528944 + L1PB3 LINE L1 946 2441 -3762 10737 213 25 6 chrX 84071088 84074780 -78525150 + L1PB3 LINE L1 2439 6209 -2 2441 167 31 60 chrX 84074783 84075232 -78524698 - MER4-int LTR ERV1 -281 6317 5891 294 29 0 0 chrX 84075232 84075267 -78524663 + (TC)n Simple_repeat Simple_repeat 1 35 0 2441 167 31 60 chrX 84075267 84075469 -78524461 - MER4-int LTR ERV1 -707 5891 5685 1816 122 7 0 chrX 84075472 84075838 -78524092 + L1PBa LINE L1 1072 1588 -5275 549 307 46 39 chrX 84075871 84076129 -78523801 + L1MB7 LINE L1 981 1311 -6178 * 3163 243 31 29 chrX 84076127 84076832 -78523098 + L1MB7 LINE L1 2991 3693 -3872 2562 32 13 0 chrX 84076832 84077143 -78522787 + L1PA4 LINE L1 5838 6152 -3 3163 243 31 29 chrX 84077143 84077818 -78522112 + L1MB7 LINE L1 3693 4384 -3181 1961 189 87 5 chrX 84077818 84078210 -78521720 - MSTB LTR MaLR 0 426 3 3163 243 31 29 chrX 84078210 84078472 -78521458 + L1MB7 LINE L1 4384 4644 -2921 * 9514 189 50 18 chrX 84078450 84081000 -78518930 + L1MA8 LINE L1 4441 7065 -645 1688 243 10 10 chrX 84081000 84081387 -78518543 - MSTD LTR MaLR 0 396 10 3073 174 30 5 chrX 84081387 84082029 -78517901 + L1MA8 LINE L1 5633 6290 -1 3049 229 29 38 chrX 84082109 84083415 -78516515 + L1MB7 LINE L1 6145 7430 -173 2290 81 3 13 chrX 84083415 84083725 -78516205 - AluSc SINE Alu -1 308 2 3049 229 29 38 chrX 84083725 84083876 -78516054 + L1MB7 LINE L1 7430 7581 -22 379 43 0 0 chrX 84084333 84084379 -78515551 + MSTB LTR MaLR 3 48 -378 537 165 19 0 chrX 84084379 84084482 -78515448 + MSTB-int LTR MaLR 1547 1651 0 1073 209 30 0 chrX 84084483 84084684 -78515246 + MSTB LTR MaLR 2 208 -218 249 347 47 36 chrX 84084828 84085021 -78514909 + MIR SINE MIR 5 199 -63 1312 332 49 40 chrX 84085498 84087029 -78512901 + L1PA15-16 LINE L1 -641 784 -5419 3156 244 40 25 chrX 84087472 84088440 -78511490 + L1PA15-16 LINE L1 1 980 -5224 * 6331 215 27 4 chrX 84088429 84089694 -78510236 - MSTB-int LTR MaLR -125 1526 233 3030 217 83 8 chrX 84089687 84090337 -78509593 - MSTB-int LTR MaLR -313 1267 569 * 849 109 8 0 chrX 84090319 84090447 -78509483 - MSTB-int LTR MaLR -1522 129 1 * 1833 108 26 125 chrX 84090457 84090873 -78509057 - THE1C LTR MaLR 0 375 1 770 86 0 43 chrX 84090873 84090979 -78508951 - MSTB LTR MaLR -9 419 317 780 88 18 0 chrX 84090984 84091097 -78508833 - MSTA LTR MaLR -313 115 1 1467 177 72 20 chrX 84092761 84093106 -78506824 - MER47A DNA MER2_type -1 365 3 1132 341 81 23 chrX 84093315 84093434 -78506496 + L1M3a LINE L1 816 927 -5842 3187 157 11 61 chrX 84093434 84094078 -78505852 + LTR9 LTR ERV1 1 612 0 1132 341 81 23 chrX 84094078 84094647 -78505283 + L1M3a LINE L1 927 1544 -5225 * 2418 236 19 25 chrX 84094640 84095361 -78504569 + L1M3a LINE L1 1962 2678 -4171 302 240 0 0 chrX 84095351 84095426 -78504504 + L1MA10 LINE L1 6258 6332 -2 * 28 29 0 0 chrX 84097317 84097352 -78502578 + AT_rich Low_complexity Low_complexity 1 35 0 396 82 55 0 chrX 84098201 84098274 -78501656 + GA-rich Low_complexity Low_complexity 2 78 0 983 93 11 22 chrX 84098274 84098456 -78501474 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 21 89 0 0 chrX 84099238 84099294 -78500636 + AT_rich Low_complexity Low_complexity 1 56 0 1359 268 95 25 chrX 84099770 84100214 -78499716 + MER21B LTR ERV1 329 803 -60 4364 261 28 38 chrX 84100260 84100440 -78499490 + MER21B-int LTR ERV1 26 206 -3985 2078 131 0 0 chrX 84100440 84100731 -78499199 + AluSq SINE Alu 1 291 -22 4364 261 28 38 chrX 84100731 84101236 -78498694 + MER21B-int LTR ERV1 206 715 -3476 1655 205 58 0 chrX 84101236 84101582 -78498348 + MER47A DNA MER2_type 1 366 0 4364 261 28 38 chrX 84101582 84101678 -78498252 + MER21B-int LTR ERV1 715 810 -3381 1665 216 31 0 chrX 84101678 84102029 -78497901 - MLT1A1 LTR MaLR -1 364 3 4364 261 28 38 chrX 84102029 84102508 -78497422 + MER21B-int LTR ERV1 810 1275 -2916 1299 243 56 3 chrX 84102508 84102812 -78497118 + MLT1A1 LTR MaLR 1 320 -45 6439 268 58 44 chrX 84102812 84107154 -78492776 + L1PA15-16 LINE L1 2 4466 -2383 214 277 0 0 chrX 84107871 84107918 -78492012 + CT-rich Low_complexity Low_complexity 3 49 0 608 155 0 26 chrX 84108998 84109114 -78490816 + L1PB1 LINE L1 6037 6149 -2 25 0 0 0 chrX 84109552 84109577 -78490353 + AT_rich Low_complexity Low_complexity 1 25 0 2903 249 27 4 chrX 84111156 84111976 -78487954 - L1P LINE L1 -1052 5094 4256 24498 119 9 20 chrX 84111976 84116730 -78483200 + L1PA8 LINE L1 1464 6167 -5 1101 237 3 6 chrX 84116746 84117197 -78482733 - L1M4 LINE L1 -3641 2741 2292 5414 189 49 38 chrX 84117209 84117955 -78481975 - L1M4 LINE L1 -5077 1307 540 1966 190 85 0 chrX 84117955 84118344 -78481586 + MSTA LTR MaLR 3 424 -4 5414 189 49 38 chrX 84118344 84118875 -78481055 - L1M4 LINE L1 -5844 540 16 325 278 42 64 chrX 84119018 84119410 -78480520 - L1MEc LINE L1 -4893 1503 1123 5826 69 11 0 chrX 84119410 84120445 -78479485 - L1PA6 LINE L1 0 6154 5042 325 278 42 64 chrX 84120445 84120571 -78479359 - L1MEc LINE L1 -5273 1123 996 24 67 0 0 chrX 84120674 84120719 -78479211 + AT_rich Low_complexity Low_complexity 1 45 0 15438 51 7 2 chrX 84121025 84123003 -78476927 - L1PA5 LINE L1 -1908 4238 2252 9317 42 0 1 chrX 84122995 84124889 -78475041 + L1PA5 LINE L1 4246 6138 -16 1160 139 5 0 chrX 84124989 84125190 -78474740 + L1MA3 LINE L1 4488 4689 -1457 4892 143 11 14 chrX 84125190 84126047 -78473883 + L1MA3 LINE L1 5446 6303 -2 28 0 0 0 chrX 84126048 84126076 -78473854 + AT_rich Low_complexity Low_complexity 1 28 0 351 202 39 108 chrX 84126107 84126236 -78473694 - MLT1D LTR MaLR -399 106 1 859 204 23 20 chrX 84226292 84226480 -78373450 - MLT1A1 LTR MaLR -172 193 1 624 227 8 0 chrX 84227001 84227129 -78372801 + FLAM_C SINE Alu 1 129 -14 206 189 0 19 chrX 84227150 84227203 -78372727 + (TA)n Simple_repeat Simple_repeat 1 52 0 27 62 0 0 chrX 84227452 84227500 -78372430 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chrX 84227699 84227720 -78372210 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chrX 84228199 84228220 -78371710 + (A)n Simple_repeat Simple_repeat 1 21 0 712 225 0 0 chrX 84228251 84228380 -78371550 + FLAM_C SINE Alu 1 129 -4 25 65 0 0 chrX 84228737 84228783 -78371147 + AT_rich Low_complexity Low_complexity 1 46 0 1405 193 0 87 chrX 84229585 84229907 -78370023 + AluJo SINE Alu 1 294 -18 25 51 0 0 chrX 84230284 84230323 -78369607 + AT_rich Low_complexity Low_complexity 1 39 0 312 305 52 63 chrX 84230560 84230699 -78369231 - L1M4 LINE L1 -1981 4165 4029 2436 62 0 0 chrX 84230699 84230989 -78368941 - AluY SINE Alu -21 290 1 312 305 52 63 chrX 84230989 84231118 -78368812 - L1M4 LINE L1 -2117 4029 3900 22 0 0 0 chrX 84231472 84231494 -78368436 + AT_rich Low_complexity Low_complexity 1 22 0 225 159 0 0 chrX 84232275 84232319 -78367611 + (TA)n Simple_repeat Simple_repeat 1 44 0 219 114 0 0 chrX 84232910 84232945 -78366985 + (TG)n Simple_repeat Simple_repeat 2 36 0 1555 241 123 2 chrX 84234941 84235365 -78364565 - MLT1D LTR MaLR -2 503 29 29 28 0 0 chrX 84235365 84235401 -78364529 + AT_rich Low_complexity Low_complexity 1 36 0 24 91 0 0 chrX 84235702 84235768 -78364162 + AT_rich Low_complexity Low_complexity 1 66 0 24 91 0 0 chrX 84235956 84236022 -78363908 + AT_rich Low_complexity Low_complexity 1 66 0 23 54 0 0 chrX 84236328 84236365 -78363565 + AT_rich Low_complexity Low_complexity 1 37 0 438 273 58 13 chrX 84236532 84236686 -78363244 + MLT1L LTR MaLR 116 276 -339 825 231 60 37 chrX 84236821 84237090 -78362840 + L1ME3 LINE L1 5888 6162 0 367 261 39 2 chrX 84237222 84237380 -78362550 + L1ME LINE L1 5263 5436 -715 21 57 0 0 chrX 84237381 84237416 -78362514 + AT_rich Low_complexity Low_complexity 1 35 0 305 281 156 12 chrX 84238641 84238801 -78361129 + L1ME LINE L1 5621 5803 -318 225 365 21 21 chrX 84238824 84238920 -78361010 + MIR SINE MIR 7 102 -160 2280 121 0 0 chrX 84238928 84239241 -78360689 - AluSq SINE Alu 0 313 1 631 315 106 14 chrX 84239333 84239625 -78360305 - MLT1L LTR MaLR 0 615 297 2035 167 45 6 chrX 84239693 84240046 -78359884 + MER39B LTR ERV1 3 369 -284 520 172 0 0 chrX 84240046 84240133 -78359797 - AluJ/FLAM SINE Alu -225 87 1 1565 221 0 10 chrX 84240258 84240565 -78359365 + AluJo SINE Alu 2 305 -7 383 351 107 30 chrX 84240745 84241147 -78358783 - L1M4 LINE L1 -2348 3798 3366 25 65 0 0 chrX 84241635 84241681 -78358249 + AT_rich Low_complexity Low_complexity 1 46 0 224 230 46 11 chrX 84242181 84242268 -78357662 + (TATG)n Simple_repeat Simple_repeat 3 92 0 831 149 0 0 chrX 84242280 84242401 -78357529 + FLAM_C SINE Alu 11 131 -12 285 109 0 0 chrX 84242828 84242874 -78357056 + (CA)n Simple_repeat Simple_repeat 1 46 0 3590 185 62 51 chrX 84244633 84245528 -78354402 + MER4D LTR ERV1 1 664 0 359 285 31 23 chrX 84246035 84246165 -78353765 - MER34 LTR ERV1 -411 131 1 28 61 0 0 chrX 84246688 84246737 -78353193 + AT_rich Low_complexity Low_complexity 1 49 0 31 58 0 0 chrX 84247081 84247133 -78352797 + AT_rich Low_complexity Low_complexity 1 52 0 195 408 136 26 chrX 84247259 84247568 -78352362 - L2 LINE L2 0 3272 2930 222 305 134 53 chrX 84247649 84247836 -78352094 - L2 LINE L2 -815 2499 2298 1813 151 101 146 chrX 84247897 84248240 -78351690 - LTR36 LTR ERV1 0 611 307 2244 71 40 0 chrX 84248240 84248562 -78351368 - L1PA5 LINE L1 -3 6151 5817 1813 151 101 146 chrX 84248562 84248849 -78351081 - LTR36 LTR ERV1 -304 307 9 691 240 33 11 chrX 84248910 84249093 -78350837 - MER20 DNA MER1_type 0 219 33 323 181 21 125 chrX 84249315 84249459 -78350471 + L1MC4 LINE L1 1971 7025 -1297 1802 279 117 45 chrX 84249591 84250376 -78349554 + L1MDb LINE L1 6 847 -5562 520 174 0 0 chrX 84250374 84250472 -78349458 + L1M LINE L1 5303 5400 -842 * 2007 184 73 5 chrX 84251465 84251850 -78348080 + MSTB LTR MaLR 1 411 -15 22 35 0 0 chrX 84251938 84251967 -78347963 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chrX 84252017 84252046 -78347884 + AT_rich Low_complexity Low_complexity 1 29 0 195 114 0 0 chrX 84252105 84252140 -78347790 + (ATG)n Simple_repeat Simple_repeat 2 36 0 1263 210 0 28 chrX 84252140 84252392 -78347538 - AluJo SINE Alu -26 286 42 275 381 40 8 chrX 84253160 84253286 -78346644 - MIR SINE MIR -113 149 20 3562 108 108 2 chrX 84253556 84254130 -78345800 + MER41B LTR ERV1 1 635 0 874 264 112 45 chrX 84254189 84254664 -78345266 - MER34C LTR ERV1 0 585 68 3039 146 40 55 chrX 84254664 84255269 -78344661 - LTR59 LTR ERV1 -1 596 1 874 264 112 45 chrX 84255269 84255331 -78344599 - MER34C LTR ERV1 -517 68 12 254 313 27 48 chrX 84255316 84255463 -78344467 + MER115 DNA AcHobo 28 171 -522 * 238 238 95 0 chrX 84255491 84255575 -78344355 + MER39 LTR ERV1 27 118 -589 2813 165 5 45 chrX 84255723 84256276 -78343654 - MER61E LTR ERV1 -38 531 1 431 184 89 126 chrX 84256293 84256564 -78343366 + LTR48 LTR ERV1 525 785 -2 1447 307 70 21 chrX 84256581 84257050 -78342880 + MER115 DNA AcHobo 192 683 -10 1440 216 29 20 chrX 84257188 84257494 -78342436 - AluJo SINE Alu 0 312 4 1900 126 40 3 chrX 84257587 84257912 -78342018 - L1MA1 LINE L1 -3 6299 5963 26 30 0 0 chrX 84258039 84258072 -78341858 + AT_rich Low_complexity Low_complexity 1 33 0 2919 189 55 13 chrX 84258177 84258790 -78341140 + MER39B LTR ERV1 4 642 -11 4028 86 7 11 chrX 84258991 84259547 -78340383 + MER41A LTR ERV1 1 554 0 6182 139 46 64 chrX 84259547 84262105 -78337825 + MER41A-int LTR ERV1 1 3803 -1212 329 87 22 0 chrX 84262105 84262151 -78337779 - THE1A LTR MaLR 0 355 309 1846 307 31 23 chrX 84262159 84262846 -78337084 + L1PA12 LINE L1 1528 2219 -5362 12583 243 31 12 chrX 84262902 84266373 -78333557 + L1P LINE L1 3220 6756 -828 906 99 63 7 chrX 84266371 84266513 -78333417 - L1PA16 LINE L1 -224 5942 5793 * 1998 75 111 4 chrX 84266511 84266916 -78333014 - L1PA16 LINE L1 -660 5494 5063 1086 177 26 9 chrX 84266916 84267140 -78332790 + L1PA15 LINE L1 5936 6165 0 22 0 0 0 chrX 84267572 84267594 -78332336 + AT_rich Low_complexity Low_complexity 1 22 0 183 351 70 59 chrX 84267754 84268025 -78331905 + L2 LINE L2 2877 3150 -122 323 291 16 47 chrX 84269503 84269630 -78330300 - MER5A DNA MER1_type -3 186 64 693 149 8 8 chrX 84269709 84269843 -78330087 + L1PBa LINE L1 1736 1869 -4994 * 3947 170 83 11 chrX 84269820 84271114 -78328816 + L1PBa LINE L1 2107 3493 -3369 7774 94 5 4 chrX 84271117 84273011 -78326919 - L1PA7 LINE L1 0 6154 4260 5299 55 0 0 chrX 84273024 84273700 -78326230 + L1PA7 LINE L1 5485 6160 0 1062 285 48 0 chrX 84273919 84274231 -78325699 + MER58B DNA MER1_type 15 341 0 353 273 67 67 chrX 84274238 84274447 -78325483 - L1M2 LINE L1 -3120 3095 2887 279 315 40 40 chrX 84274748 84274991 -78324939 - L1M2 LINE L1 -4331 1885 1526 732 232 25 0 chrX 84276338 84276520 -78323410 + L1M1 LINE L1 5379 5565 -677 893 148 101 0 chrX 84276520 84276669 -78323261 - AluSg/x SINE Alu -10 302 139 302 170 0 0 chrX 84276670 84276717 -78323213 - Alu SINE Alu -256 47 1 1188 146 101 2 chrX 84276717 84276951 -78322979 + L1MA6 LINE L1 6053 6300 0 603 187 32 24 chrX 84276976 84277099 -78322831 + FLAM_C SINE Alu 3 126 -7 282 308 154 14 chrX 84277200 84277343 -78322587 + MIR3 SINE MIR 14 176 -32 1392 265 219 12 chrX 84277602 84278165 -78321765 - L2 LINE L2 -501 2813 2135 240 326 20 20 chrX 84278189 84278287 -78321643 + LTR16C LTR ERVL 3 100 -391 362 329 57 69 chrX 84278362 84278542 -78321388 + LTR16C LTR ERVL 182 360 -131 2365 98 0 16 chrX 84278542 84278859 -78321071 - AluSp SINE Alu -1 312 1 362 329 57 69 chrX 84278859 84278924 -78321006 + LTR16C LTR ERVL 360 424 -67 657 244 96 39 chrX 84279006 84279236 -78320694 - L2 LINE L2 -1302 2012 1770 2794 192 8 15 chrX 84279338 84279869 -78320061 + MER44D DNA MER2_type 1 582 -23 768 271 45 15 chrX 84279881 84280150 -78319780 - L2 LINE L2 -1609 1705 1429 1688 245 110 50 chrX 84280435 84281015 -78318915 - MLT1E2 LTR MaLR -11 615 1 245 224 141 35 chrX 84281043 84281128 -78318802 - MLT1E2-int LTR MaLR -30 1341 1248 497 224 75 134 chrX 84281188 84281531 -78318399 - MLT1E2-int LTR MaLR -99 1524 989 271 323 20 0 chrX 84281658 84281757 -78318173 - MLT1E2-int LTR MaLR -484 887 787 207 111 0 67 chrX 84281776 84281795 -78318135 + (A)n Simple_repeat Simple_repeat 1 20 -22 2306 79 0 35 chrX 84281795 84282113 -78317817 + AluY SINE Alu 3 309 -2 207 111 0 67 chrX 84282113 84282138 -78317792 + (A)n Simple_repeat Simple_repeat 20 42 0 1126 228 13 23 chrX 84282409 84282578 -78317352 - MLT1E2-int LTR MaLR -766 605 439 2334 156 46 5 chrX 84282578 84282989 -78316941 + MSTA LTR MaLR 1 428 0 1126 228 13 23 chrX 84282989 84283122 -78316808 - MLT1E2-int LTR MaLR -932 439 306 556 281 6 6 chrX 84283127 84283294 -78316636 - MLT1E2-int LTR MaLR -1203 168 2 1196 259 34 19 chrX 84283295 84283734 -78316196 - MLT1E3 LTR MaLR 0 624 174 289 246 79 78 chrX 84283705 84283963 -78315967 - MLT1E1 LTR MaLR -326 328 6 * 704 267 35 56 chrX 84284196 84284431 -78315499 - L2 LINE L2 -1832 1482 1244 1370 183 108 77 chrX 84284431 84284846 -78315084 + MSTA LTR MaLR 1 428 0 9208 147 6 35 chrX 84284849 84286472 -78313458 + MSTA-int LTR MaLR 4 1578 -2 1688 183 121 18 chrX 84286474 84286862 -78313068 + MSTA LTR MaLR 1 428 0 704 267 35 56 chrX 84286862 84286907 -78313023 - L2 LINE L2 -2073 1241 1201 375 404 40 14 chrX 84286990 84287314 -78312616 + L2 LINE L2 2736 3062 -210 264 285 28 112 chrX 84288756 84289000 -78310930 - MIR SINE MIR -10 198 5 201 74 0 0 chrX 84289036 84289063 -78310867 + (CATATA)n Simple_repeat Simple_repeat 6 32 0 237 279 47 0 chrX 84289064 84289150 -78310780 - L1MC4 LINE L1 -1339 6703 6614 1333 243 7 3 chrX 84289172 84289328 -78310602 - AluJo SINE Alu -23 289 130 2172 120 0 7 chrX 84289328 84289636 -78310294 - AluSg SINE Alu -4 306 1 1333 243 7 3 chrX 84289636 84289767 -78310163 - AluJo SINE Alu -182 130 1 220 414 0 47 chrX 84289891 84290019 -78309911 - L2 LINE L2 -5 3308 3187 2004 33 0 0 chrX 84290415 84290656 -78309274 - L1PA3 LINE L1 0 6155 5915 370 333 94 6 chrX 84290944 84291124 -78308806 - MIR SINE MIR -55 207 12 283 358 62 12 chrX 84291132 84291294 -78308636 - MIR3 SINE MIR -23 185 16 1585 271 40 13 chrX 84293017 84293329 -78306601 + L1ME3 LINE L1 5499 5832 -330 1580 184 3 36 chrX 84293329 84293633 -78306297 + AluJo SINE Alu 1 294 -18 1585 271 40 13 chrX 84293633 84293848 -78306082 + L1ME3 LINE L1 5832 6040 -122 875 225 52 30 chrX 84293930 84294161 -78305769 + MER39 LTR ERV1 268 503 -204 815 204 13 0 chrX 84294187 84294339 -78305591 + FRAM SINE Alu 1 154 -12 203 122 0 24 chrX 84294350 84294391 -78305539 + (TG)n Simple_repeat Simple_repeat 1 40 0 1718 129 14 3 chrX 84294534 84294820 -78305110 - HSMAR2 DNA Mariner -1012 290 2 261 119 0 0 chrX 84294820 84294862 -78305068 + (TA)n Simple_repeat Simple_repeat 2 43 0 1582 274 48 2 chrX 84294896 84295540 -78304390 + L1M3 LINE L1 4791 5456 -724 460 17 119 0 chrX 84295645 84295763 -78304167 + (TA)n Simple_repeat Simple_repeat 1 132 0 4729 212 19 14 chrX 84295777 84296929 -78303001 - L1 LINE L1 -969 5177 4020 295 268 32 32 chrX 84296957 84297080 -78302850 + HAL1b LINE L1 748 870 -478 28 0 0 0 chrX 84297353 84297381 -78302549 + AT_rich Low_complexity Low_complexity 1 28 0 1439 135 47 91 chrX 84297926 84298192 -78301738 + THE1C LTR MaLR 72 348 -27 192 40 0 0 chrX 84298192 84298217 -78301713 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1585 161 0 82 chrX 84298221 84298525 -78301405 - AluSx SINE Alu -33 279 1 1439 135 47 91 chrX 84298525 84298571 -78301359 + THE1C LTR MaLR 351 375 0 8620 187 19 7 chrX 84298575 84300202 -78299728 + MSTA-int LTR MaLR 5 1651 0 1446 191 177 11 chrX 84300202 84300569 -78299361 + MSTA LTR MaLR 1 428 0 338 299 51 46 chrX 84300574 84300771 -78299159 - L1M4 LINE L1 -1182 4964 4767 1161 195 79 96 chrX 84300805 84301199 -78298731 + MLT1B LTR MaLR 4 390 0 1295 196 75 28 chrX 84301204 84301525 -78298405 + MER44D DNA MER2_type 3 608 -1 1666 257 123 30 chrX 84301559 84302538 -78297392 - L1M4 LINE L1 -1487 4659 3590 235 94 24 63 chrX 84302643 84302770 -78297160 + (TATAA)n Simple_repeat Simple_repeat 1 122 0 5913 121 13 5 chrX 84302786 84303731 -78296199 + L1PB2 LINE L1 5185 6138 -13 180 0 0 0 chrX 84303731 84303751 -78296179 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 5913 121 13 5 chrX 84303751 84303764 -78296166 + L1PB2 LINE L1 6138 6149 -2 198 309 15 0 chrX 84304286 84304354 -78295576 + MIR SINE MIR 193 261 -1 467 152 0 0 chrX 84304442 84304521 -78295409 + L1MA9 LINE L1 6209 6287 -25 911 116 40 0 chrX 84304570 84304743 -78295187 - L1MA7 LINE L1 -3 6288 6109 1539 152 23 4 chrX 84304752 84305015 -78294915 + MER46B DNA MER2_type 1 143 -93 11187 244 43 31 chrX 84305015 84306632 -78293298 - L1MA7 LINE L1 -721 5582 3986 2388 80 0 0 chrX 84306632 84306934 -78292996 + AluY SINE Alu 2 303 -8 11187 244 43 31 chrX 84306934 84307758 -78292172 - L1MA7 LINE L1 -2317 3986 3173 2104 112 13 0 chrX 84307758 84308061 -78291869 - AluSx SINE Alu -5 307 1 11187 244 43 31 chrX 84308061 84309329 -78290601 - L1MA7 LINE L1 -3130 3173 1922 216 0 0 0 chrX 84309329 84309353 -78290577 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 11187 244 43 31 chrX 84309353 84309424 -78290506 - L1MA7 LINE L1 -4381 1922 1853 2059 147 85 18 chrX 84309424 84309825 -78290105 - MSTA LTR MaLR 0 428 1 11187 244 43 31 chrX 84309825 84310162 -78289768 - L1MA7 LINE L1 -4450 1853 1432 22 35 0 0 chrX 84311043 84311072 -78288858 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 84311948 84311970 -78287960 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 84312652 84312681 -78287249 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chrX 84312842 84312879 -78287051 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 84313494 84313516 -78286414 + AT_rich Low_complexity Low_complexity 1 22 0 273 29 0 0 chrX 84313786 84313820 -78286110 + (CA)n Simple_repeat Simple_repeat 2 35 0 378 0 0 0 chrX 84313821 84313863 -78286067 + (GA)n Simple_repeat Simple_repeat 1 42 0 386 339 76 6 chrX 84314501 84314672 -78285258 + MIR SINE MIR 68 250 -12 376 252 29 10 chrX 84314766 84314869 -78285061 + L1M4c LINE L1 822 926 -5720 337 237 36 43 chrX 84314965 84315104 -78284826 + L1M4c LINE L1 816 953 -5589 330 222 0 0 chrX 84315133 84315205 -78284725 + L1M4c LINE L1 1778 1849 -4797 4328 157 30 4 chrX 84315227 84315614 -78284316 - HSMAR2 DNA Mariner -4 1298 923 342 0 0 0 chrX 84315614 84315652 -78284278 + (TG)n Simple_repeat Simple_repeat 1 38 0 4328 157 30 4 chrX 84315652 84316022 -78283908 - HSMAR2 DNA Mariner -379 923 521 2028 260 70 21 chrX 84316138 84316483 -78283447 - L1M4 LINE L1 -2741 3405 3078 575 250 9 0 chrX 84316483 84316641 -78283289 - FLAM_A SINE Alu 0 161 3 2028 260 70 21 chrX 84316641 84317380 -78282550 - L1M4 LINE L1 -3068 3078 2266 250 378 56 15 chrX 84318058 84318328 -78281602 - L1MEd LINE L1 -5774 345 65 201 74 0 0 chrX 84319769 84319796 -78280134 + (CA)n Simple_repeat Simple_repeat 2 28 0 28 71 0 0 chrX 84319977 84320033 -78279897 + AT_rich Low_complexity Low_complexity 1 56 0 2026 140 73 9 chrX 84320113 84320455 -78279475 - THE1B LTR MaLR 0 364 1 11022 110 6 2 chrX 84320461 84322002 -78277928 - THE1B-int LTR MaLR -7 1573 27 7491 194 16 23 chrX 84321993 84322362 -78277568 + L1MA3 LINE L1 3605 3975 -2267 * 2031 93 0 31 chrX 84322362 84322690 -78277240 + AluY SINE Alu 1 319 0 7491 194 16 23 chrX 84322690 84324226 -78275704 + L1MA3 LINE L1 3975 5499 -743 4352 158 34 12 chrX 84324245 84325069 -78274861 + L1MA3 LINE L1 5464 6305 0 24 32 0 0 chrX 84325156 84325187 -78274743 + AT_rich Low_complexity Low_complexity 1 31 0 213 205 0 0 chrX 84326171 84326210 -78273720 + (TG)n Simple_repeat Simple_repeat 2 40 0 4038 112 78 18 chrX 84326756 84327715 -78272215 - MER11A LTR ERVK 0 1266 1 480 272 16 0 chrX 84328011 84328136 -78271794 + FLAM_C SINE Alu 1 127 -16 379 216 68 25 chrX 84328145 84328330 -78271600 - LTR48 LTR ERV1 -22 739 433 * 933 254 73 26 chrX 84328328 84328718 -78271212 - LTR48 LTR ERV1 -302 485 1 468 58 76 29 chrX 84328854 84329025 -78270905 + (TA)n Simple_repeat Simple_repeat 2 180 0 254 167 22 67 chrX 84329025 84329115 -78270815 + (TATAG)n Simple_repeat Simple_repeat 1 86 0 477 17 61 72 chrX 84329115 84329296 -78270634 + (TA)n Simple_repeat Simple_repeat 2 180 0 412 38 76 51 chrX 84329348 84329506 -78270424 + (TA)n Simple_repeat Simple_repeat 1 162 0 381 44 89 43 chrX 84329523 84329857 -78270073 + (TA)n Simple_repeat Simple_repeat 1 349 0 1420 162 108 59 chrX 84329877 84330363 -78269567 - MER4A LTR ERV1 -21 444 75 443 48 16 0 chrX 84330369 84330431 -78269499 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 330 326 0 56 chrX 84330442 84330620 -78269310 + L1MEc LINE L1 1229 1396 -5000 675 345 78 49 chrX 84330844 84331372 -78268558 + L3 LINE CR1 814 1356 -221 2174 91 3 0 chrX 84331372 84331684 -78268246 + AluSp SINE Alu 1 313 0 742 284 9 39 chrX 84331704 84331759 -78268171 + MIR SINE MIR 41 96 -166 1173 219 34 109 chrX 84331759 84332207 -78267723 - MLT2D LTR ERVL 0 414 1 742 284 9 39 chrX 84332207 84332380 -78267550 + MIR SINE MIR 96 262 0 21 71 0 0 chrX 84332900 84332942 -78266988 + AT_rich Low_complexity Low_complexity 1 42 0 2028 139 3 7 chrX 84333069 84333371 -78266559 - AluSx SINE Alu -11 301 1 1366 206 8 83 chrX 84334357 84334731 -78265199 - MER31A LTR ERV1 -8 477 132 5355 146 152 74 chrX 84335013 84336450 -78263480 - MER4A-int LTR ERV1 -5048 1550 1 1743 126 0 19 chrX 84336453 84336715 -78263215 - MER4A LTR ERV1 0 664 408 1044 200 170 35 chrX 84336707 84337077 -78262853 - LTR10B LTR ERV1 -115 432 13 * 3866 164 98 40 chrX 84337100 84338488 -78261442 + MER4-int LTR ERV1 1514 3272 -3326 4375 23 6 0 chrX 84338488 84339008 -78260922 + L1PA4 LINE L1 5631 6153 -2 3866 164 98 40 chrX 84339008 84339443 -78260487 + MER4-int LTR ERV1 3272 3681 -2917 * 9546 149 50 32 chrX 84339442 84339803 -78260127 + MER4-int LTR ERV1 3837 4190 -2408 2408 93 0 0 chrX 84339803 84340115 -78259815 + AluSq SINE Alu 1 312 -1 9546 149 50 32 chrX 84340115 84341652 -78258278 + MER4-int LTR ERV1 4190 5769 -829 2689 215 34 3 chrX 84341766 84342376 -78257554 + L1MB4 LINE L1 5491 6119 -61 6432 265 15 13 chrX 84342730 84344567 -78255363 + L1P LINE L1 2411 4250 -1896 1157 113 32 5 chrX 84344569 84344755 -78255175 - THE1C-int LTR MaLR -1386 194 4 401 106 0 30 chrX 84344758 84344824 -78255106 - THE1C LTR MaLR 0 428 365 4730 175 10 0 chrX 84344837 84345608 -78254322 + L1PA16 LINE L1 1373 2151 -5414 1912 126 30 0 chrX 84345634 84345968 -78253962 - L1M1 LINE L1 -5081 2484 2141 1200 154 89 35 chrX 84345968 84346100 -78253830 - THE1C LTR MaLR -37 338 215 315 0 0 0 chrX 84346100 84346135 -78253795 + (GA)n Simple_repeat Simple_repeat 1 35 0 1200 154 89 35 chrX 84346135 84346261 -78253669 - THE1C LTR MaLR -160 215 66 867 138 115 0 chrX 84346263 84346437 -78253493 + L1PA16 LINE L1 3213 3406 -4159 * 3784 165 50 4 chrX 84346430 84346543 -78253387 + L1PA16 LINE L1 6676 6782 -803 2151 107 0 17 chrX 84346543 84346843 -78253087 + AluSq SINE Alu 14 308 -5 3784 165 50 4 chrX 84346843 84347529 -78252401 + L1PA16 LINE L1 6782 7584 -1 433 288 18 47 chrX 84347752 84347922 -78252008 - MLT1A1 LTR MaLR -34 331 167 249 325 71 32 chrX 84347998 84348124 -78251806 + MER5B DNA MER1_type 1 131 -47 1375 193 51 18 chrX 84348213 84348488 -78251442 - AluJb SINE Alu -28 284 1 522 199 0 104 chrX 84350074 84350209 -78249721 - MER44D DNA MER2_type -213 396 7 1754 290 47 26 chrX 84350219 84351240 -78248690 + L1M4c LINE L1 1321 2449 -3933 4934 170 37 27 chrX 84351331 84352364 -78247566 + L1MA9 LINE L1 5229 6273 -39 311 297 141 8 chrX 84353722 84353850 -78246080 - L2 LINE L2 -2 3311 3167 196 307 0 40 chrX 84353891 84353966 -78245964 - L2 LINE L2 0 3272 3201 274 183 42 0 chrX 84354541 84354612 -78245318 + L1MB2 LINE L1 6098 6171 0 223 323 0 54 chrX 84354676 84354769 -78245161 + MIR SINE MIR 88 175 -87 25 0 0 0 chrX 84355289 84355314 -78244616 + AT_rich Low_complexity Low_complexity 1 25 0 3675 140 12 29 chrX 84355600 84355836 -78244094 + L1PB1 LINE L1 4653 4891 -1260 1901 126 24 81 chrX 84355836 84356218 -78243712 - THE1B LTR MaLR 0 364 5 3675 140 12 29 chrX 84356218 84357138 -78242792 + L1PB1 LINE L1 4891 5791 -360 243 148 16 33 chrX 84357138 84357199 -78242731 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 2373 126 11 0 chrX 84357199 84357564 -78242366 + L1PB1 LINE L1 5782 6150 -1 21 0 0 0 chrX 84357816 84357837 -78242093 + AT_rich Low_complexity Low_complexity 1 21 0 2318 66 0 23 chrX 84358034 84358336 -78241594 + AluY SINE Alu 1 295 -16 3220 198 11 5 chrX 84358795 84359456 -78240474 - L1MB3 LINE L1 -3 6180 5516 770 285 50 44 chrX 84360238 84360557 -78239373 + Charlie2 DNA MER1_type 2 322 -2460 3034 171 12 77 chrX 84360585 84361270 -78238660 - MER73 LTR ERVL -2 642 3 2510 209 43 68 chrX 84361326 84362251 -78237679 + Charlie2 DNA MER1_type 1961 2862 0 240 279 33 0 chrX 84362462 84362523 -78237407 + MER91B DNA MER1_type 2 64 -126 817 224 54 31 chrX 84363163 84363386 -78236544 + MER106A DNA MER1_type 1 228 -8 1193 270 120 5 chrX 84363840 84364207 -78235723 + MLT1J LTR MaLR 12 420 -91 330 393 44 27 chrX 84364389 84364572 -78235358 + MIR SINE MIR 45 230 -32 180 77 0 0 chrX 84365956 84365982 -78233948 + (CA)n Simple_repeat Simple_repeat 1 26 0 1581 190 7 92 chrX 84366120 84366546 -78233384 + MLT1B LTR MaLR 1 390 0 851 211 72 10 chrX 84367463 84367657 -78232273 - MER67B LTR ERV1 -41 620 415 2388 141 234 0 chrX 84367657 84368126 -78231804 - LTR12 LTR ERV1 -135 579 1 382 216 36 86 chrX 84368199 84368500 -78231430 - pTR5 LTR ERV1 -1410 1028 743 1920 186 41 46 chrX 84368500 84368801 -78231129 - MER67B LTR ERV1 -241 420 120 1259 118 50 0 chrX 84368801 84369021 -78230909 - L1MA8 LINE L1 -2 6289 6059 1920 186 41 46 chrX 84369021 84369134 -78230796 - MER67B LTR ERV1 -541 120 8 4077 132 61 3 chrX 84369257 84369979 -78229951 + L1MA4A LINE L1 5534 6297 -6 37 0 0 0 chrX 84370022 84370059 -78229871 + AT_rich Low_complexity Low_complexity 1 37 0 349 354 115 19 chrX 84370135 84370344 -78229586 - MIR SINE MIR -10 252 24 307 242 77 0 chrX 84370408 84370499 -78229431 + L2 LINE L2 1904 2001 -1313 276 204 97 19 chrX 84370711 84370814 -78229116 - L1ME3A LINE L1 -222 5948 5838 401 331 70 35 chrX 84370815 84371156 -78228774 - L1ME3A LINE L1 -301 5820 5468 282 193 0 0 chrX 84371222 84371279 -78228651 - L1ME3A LINE L1 -713 5457 5401 764 232 22 22 chrX 84371289 84371474 -78228456 - AluJb SINE Alu -9 303 119 886 159 0 0 chrX 84371486 84371624 -78228306 - FLAM_C SINE Alu 0 143 6 1788 110 30 0 chrX 84371744 84372008 -78227922 - AluY SINE Alu -39 272 1 672 307 29 19 chrX 84372019 84372436 -78227494 - L1ME3A LINE L1 -886 5260 4840 397 297 127 10 chrX 84372475 84372869 -78227061 - L1ME3A LINE L1 -3455 2691 2252 6805 209 26 1 chrX 84372962 84375357 -78224573 + L1PA15 LINE L1 3759 6165 0 3049 163 40 2 chrX 84375399 84375902 -78224028 - MER41D LTR ERV1 -34 523 2 1932 271 51 36 chrX 84375902 84376811 -78223119 - MER41D-int LTR ERV1 -2 7754 6860 2488 112 22 6 chrX 84376811 84377169 -78222761 - THE1B LTR MaLR 0 364 1 10276 121 11 26 chrX 84377169 84378773 -78221157 - THE1B-int LTR MaLR 0 1580 1 2324 124 34 6 chrX 84378773 84379127 -78220803 - THE1B LTR MaLR 0 364 1 1932 271 51 36 chrX 84379127 84379186 -78220744 - MER41D-int LTR ERV1 -895 6861 6768 885 215 36 27 chrX 84379403 84379622 -78220308 - MER66-int LTR ERV1 -1848 4828 4608 533 176 19 19 chrX 84379625 84379733 -78220197 - MER49 LTR ERV1 -200 723 616 * 976 187 33 103 chrX 84379719 84380019 -78219911 - MER49 LTR ERV1 -634 289 11 1287 201 31 10 chrX 84380052 84380387 -78219543 - MER49-int LTR ERV1 -21 7079 6384 356 227 80 0 chrX 84380386 84380474 -78219456 - MER49-int LTR ERV1 -618 6140 6046 * 210 71 0 0 chrX 84380526 84380554 -78219376 + (A)n Simple_repeat Simple_repeat 1 28 0 2751 128 28 6 chrX 84380804 84381274 -78218656 - L1MA2 LINE L1 0 6304 5825 6793 216 24 5 chrX 84381277 84383326 -78216604 - L1 LINE L1 -2309 5256 3167 2106 98 115 25 chrX 84383364 84383767 -78216163 + LTR14B LTR ERVK 1 608 0 41850 59 11 2 chrX 84383767 84389492 -78210438 + HERVK14 LTR ERVK 1 5945 0 366 81 0 32 chrX 84389495 84389557 -78210373 + LTR14B LTR ERVK 1 60 -548 * 1878 109 168 6 chrX 84389531 84389889 -78210041 + LTR14B LTR ERVK 193 608 0 14242 186 51 24 chrX 84389889 84391033 -78208897 - L1 LINE L1 -4563 3002 1890 854 23 53 0 chrX 84391033 84391166 -78208764 + (TC)n Simple_repeat Simple_repeat 1 140 0 14242 186 51 24 chrX 84391166 84392942 -78206988 - L1 LINE L1 -5675 1890 5 200 321 28 38 chrX 84393028 84393134 -78206796 - MIR SINE MIR -82 180 76 323 226 11 0 chrX 84393256 84393348 -78206582 + L1MCa LINE L1 1994 6980 -1342 25 0 0 0 chrX 84393719 84393744 -78206186 + AT_rich Low_complexity Low_complexity 1 25 0 3208 159 17 26 chrX 84394054 84394639 -78205291 + LTR22 LTR ERVK 1 580 0 1828 146 58 25 chrX 84394769 84395132 -78204798 + THE1C LTR MaLR 1 375 0 9970 134 31 8 chrX 84395133 84396676 -78203254 + THE1C-int LTR MaLR 2 1580 0 1700 171 52 19 chrX 84396676 84397039 -78202891 + THE1C LTR MaLR 1 375 0 202 68 68 0 chrX 84397399 84397443 -78202487 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 3964 120 8 3 chrX 84397444 84398054 -78201876 - L1PB1 LINE L1 -6 6145 5533 1231 26 39 0 chrX 84398054 84398206 -78201724 + L1PA5 LINE L1 5991 6151 -3 1688 143 3 9 chrX 84398206 84398581 -78201349 - L1PB1 LINE L1 -624 5527 5160 3403 85 0 5 chrX 84398611 84399057 -78200873 + MLT2A1 LTR ERVL 1 444 0 16786 75 10 1 chrX 84399057 84401210 -78198720 + HERVL-A1 LTR ERVL 1 2172 -3482 842 270 4 8 chrX 84401214 84401477 -78198453 + L1P LINE L1 4898 5159 -987 246 244 13 26 chrX 84402000 84402078 -78197852 - MIR SINE MIR -32 230 154 630 189 89 65 chrX 84402648 84402817 -78197113 - MLT1A2 LTR MaLR 0 374 224 3203 242 86 33 chrX 84402973 84403811 -78196119 - MLT-int LTR MaLR -5 1730 849 466 266 181 18 chrX 84403949 84404175 -78195755 - MLT1A2 LTR MaLR -100 265 3 3865 242 70 67 chrX 84405732 84406778 -78193152 + L1M3c LINE L1 1 1042 -5099 252 132 0 0 chrX 84406778 84406816 -78193114 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 3865 242 70 67 chrX 84406816 84406953 -78192977 + L1M3c LINE L1 1042 1228 -4913 1659 181 28 0 chrX 84406953 84407279 -78192651 + L1MA9 LINE L1 5974 6308 -4 25 108 0 0 chrX 84407637 84407739 -78192191 + AT_rich Low_complexity Low_complexity 1 102 0 9894 247 30 20 chrX 84407843 84411790 -78188140 + L1PA15 LINE L1 1244 5243 -1554 6551 71 9 2 chrX 84411802 84412671 -78187259 - L1PA8 LINE L1 -6 6166 5292 1280 60 0 0 chrX 84412671 84412837 -78187093 + L1PA8 LINE L1 5138 5303 -843 * 3729 176 33 8 chrX 84412833 84414167 -78185763 + L1PA15 LINE L1 5230 6590 -226 4440 100 14 115 chrX 84414277 84415138 -78184792 - L1PB1 LINE L1 -1 6150 5377 1548 215 8 3 chrX 84415139 84415502 -78184428 + L1PB1 LINE L1 4999 5363 -783 645 219 14 7 chrX 84416353 84416499 -78183431 + MLT1F LTR MaLR 185 331 -211 820 232 58 21 chrX 84417904 84418145 -78181785 + L1ME1 LINE L1 5773 6022 -144 3729 207 9 13 chrX 84418155 84418858 -78181072 - L1 LINE L1 -1695 4451 3750 385 83 12 83 chrX 84418858 84418942 -78180988 - MADE1 DNA Mariner 0 80 3 3729 207 9 13 chrX 84418942 84419077 -78180853 - L1 LINE L1 -2396 3750 3616 5153 187 15 16 chrX 84419077 84420756 -78179174 + L1PA16 LINE L1 4488 6160 -6 921 227 5 5 chrX 84420760 84420945 -78178985 + MER68 LTR ERV1 302 486 -76 510 214 90 14 chrX 84420950 84421095 -78178835 + L1ME1 LINE L1 6007 6162 -4 860 211 83 47 chrX 84421155 84421471 -78178459 + L1MC5 LINE L1 7489 7825 -136 6129 90 11 12 chrX 84421471 84422377 -78177553 + L1PA14 LINE L1 4578 5484 -677 2264 77 0 51 chrX 84422377 84422690 -78177240 + AluY SINE Alu 1 297 -14 6129 90 11 12 chrX 84422690 84423367 -78176563 + L1PA14 LINE L1 5484 6160 -1 860 211 83 47 chrX 84423367 84423472 -78176458 + L1MC5 LINE L1 7825 7925 -36 38 0 0 0 chrX 84423685 84423723 -78176207 + AT_rich Low_complexity Low_complexity 1 38 0 2553 223 22 69 chrX 84423730 84424457 -78175473 - L1MA3 LINE L1 -317 5988 5229 933 90 0 0 chrX 84424457 84424591 -78175339 - L1PA13 LINE L1 -4 6159 6026 2553 223 22 69 chrX 84424591 84424981 -78174949 - L1MA3 LINE L1 -1076 5229 4822 606 42 0 62 chrX 84424981 84425077 -78174853 - L1PA10 LINE L1 -1 6167 6078 2553 223 22 69 chrX 84425077 84425326 -78174604 - L1MA3 LINE L1 -1483 4822 4694 222 37 0 0 chrX 84425326 84425353 -78174577 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2553 223 22 69 chrX 84425353 84425483 -78174447 - L1MA3 LINE L1 -1611 4694 4559 491 230 16 16 chrX 84425483 84425609 -78174321 + MER57-int LTR ERV1 4453 4578 -2959 1747 94 0 37 chrX 84425609 84425853 -78174077 + AluY SINE Alu 1 235 -76 510 70 14 0 chrX 84425853 84425924 -78174006 - AluY SINE Alu -226 84 13 2634 131 44 4 chrX 84425924 84426374 -78173556 + MER57-int LTR ERV1 3250 3717 -1500 26698 112 5 9 chrX 84426383 84431801 -78168129 - L1PA7 LINE L1 -1 6468 1034 398 319 83 16 chrX 84431880 84432312 -78167618 + L1M4 LINE L1 3337 3797 -2349 4891 145 32 9 chrX 84432759 84433967 -78165963 + L1PA16 LINE L1 4935 6165 -1 25 90 0 0 chrX 84434651 84434718 -78165212 + AT_rich Low_complexity Low_complexity 1 67 0 6988 248 118 35 chrX 84434753 84435470 -78164460 - L1PA16 LINE L1 -137 6029 5372 6920 70 1 0 chrX 84435470 84436841 -78163089 + L1PA6 LINE L1 4783 6154 0 6988 248 118 35 chrX 84436841 84437141 -78162789 - L1PA16 LINE L1 -794 5372 5098 1534 196 3 34 chrX 84437141 84437462 -78162468 - AluJb SINE Alu -1 311 1 6988 248 118 35 chrX 84437462 84440231 -78159699 - L1PA16 LINE L1 -1068 5098 1931 23 33 0 0 chrX 84440621 84440651 -78159279 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chrX 84440835 84440877 -78159053 + AT_rich Low_complexity Low_complexity 1 42 0 1654 183 12 6 chrX 84441244 84441566 -78158364 - L1MB1 LINE L1 -1 6167 5844 8321 199 26 14 chrX 84441566 84443110 -78156820 + L1PA12 LINE L1 24 1585 -5996 2252 170 36 13 chrX 84443168 84443615 -78156315 + L1PA12 LINE L1 2411 2867 -4707 4642 215 5 1 chrX 84443630 84444629 -78155301 + L1PA12 LINE L1 3776 4778 -2806 44328 38 1 2 chrX 84444638 84450791 -78149139 + L1PA3 LINE L1 9 6152 -3 2011 188 8 0 chrX 84450793 84451176 -78148754 + L1PA12 LINE L1 4762 5147 -2437 29 47 0 0 chrX 84451176 84451219 -78148711 + AT_rich Low_complexity Low_complexity 1 43 0 3327 108 56 0 chrX 84451219 84451561 -78148369 - L1PB1 LINE L1 -3 6148 5760 957 102 0 0 chrX 84451561 84451809 -78148121 + (TA)n Simple_repeat Simple_repeat 1 248 0 3327 108 56 0 chrX 84451809 84451999 -78147931 - L1PB1 LINE L1 -391 5760 5582 8799 210 15 4 chrX 84452005 84452442 -78147488 + L1P5 LINE L1 3245 3676 -2475 201 39 0 0 chrX 84452442 84452468 -78147462 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8799 210 15 4 chrX 84452468 84454298 -78145632 + L1P5 LINE L1 3676 5541 -610 8698 174 9 6 chrX 84454299 84454859 -78145071 + L1PA12 LINE L1 5138 5695 -1911 2060 117 3 0 chrX 84454859 84455238 -78144692 - AluSx SINE Alu 0 380 1 8698 174 9 6 chrX 84455238 84457140 -78142790 + L1PA12 LINE L1 5695 7606 0 942 224 195 3 chrX 84457141 84457454 -78142476 - L1MA7 LINE L1 -435 5856 5484 1478 180 95 0 chrX 84457747 84458053 -78141877 - AluSx SINE Alu 0 333 1 1768 254 106 62 chrX 84458112 84458318 -78141612 - L1MD2 LINE L1 -3 6356 6161 288 0 0 0 chrX 84458318 84458350 -78141580 + (TG)n Simple_repeat Simple_repeat 2 33 0 1768 254 106 62 chrX 84458350 84459412 -78140518 - L1MD2 LINE L1 -198 6161 5042 437 228 0 0 chrX 84459434 84459526 -78140404 - L1MB7 LINE L1 -108 6133 6042 1100 160 5 10 chrX 84459529 84459723 -78140207 + MLT1B LTR MaLR 3 195 -195 397 279 8 25 chrX 84459769 84459891 -78140039 + MLT1B LTR MaLR 204 323 -67 246 224 0 0 chrX 84459890 84459948 -78139982 + MLT1B LTR MaLR 448 505 0 * 259 253 46 11 chrX 84459985 84460072 -78139858 - L1MC4 LINE L1 -1339 6703 6614 228 196 0 0 chrX 84460055 84460106 -78139824 + L1MC4 LINE L1 6653 6703 -1339 * 414 215 0 0 chrX 84460111 84460190 -78139740 - L1MB7 LINE L1 -223 6018 5940 * 1134 222 69 44 chrX 84460184 84460544 -78139386 - L1MB7 LINE L1 -1683 4520 4152 * 1964 268 55 3 chrX 84460539 84461170 -78138760 - L1MB7 LINE L1 -4506 1699 1036 417 203 83 45 chrX 84461170 84461303 -78138627 + MLT1B LTR MaLR 1 138 -252 11844 115 26 11 chrX 84461303 84463090 -78136840 - MER61-int LTR ERV1 -399 4818 3005 9287 238 45 18 chrX 84463090 84465218 -78134712 - L1M1 LINE L1 -745 6820 4532 1665 197 0 7 chrX 84465218 84465517 -78134413 - AluJo SINE Alu -15 297 1 9287 238 45 18 chrX 84465517 84466769 -78133161 - L1M1 LINE L1 -3033 4532 3316 788 302 116 26 chrX 84466782 84467352 -78132578 - L1MB7 LINE L1 -5189 1015 395 1502 101 0 0 chrX 84468159 84468357 -78131573 - AluSq SINE Alu -115 198 1 987 264 9 21 chrX 84468375 84468712 -78131218 - L1 LINE L1 -866 5280 4948 * 6294 237 26 2 chrX 84468709 84470298 -78129632 + L1PA13 LINE L1 2003 3643 -3154 220 145 16 16 chrX 84470848 84470910 -78129020 + (TA)n Simple_repeat Simple_repeat 1 62 0 344 213 74 16 chrX 84470934 84471056 -78128874 - MER113 DNA MER1_type? -391 130 2 585 349 57 30 chrX 84471886 84472324 -78127606 - LTR16A LTR ERVL 0 450 1 1063 180 0 0 chrX 84472384 84472556 -78127374 - AluJ SINE Alu -20 292 121 601 169 89 16 chrX 84472602 84472726 -78127204 - AluJ SINE Alu -174 138 6 459 209 0 0 chrX 84472809 84472914 -78127016 + (TA)n Simple_repeat Simple_repeat 2 106 0 2119 224 20 30 chrX 84473846 84474337 -78125593 - LTR40a LTR ERVL 0 519 34 25 65 0 0 chrX 84475564 84475610 -78124320 + AT_rich Low_complexity Low_complexity 1 46 0 2101 111 0 10 chrX 84475708 84476005 -78123925 + AluSx SINE Alu 1 294 -18 24 32 0 0 chrX 84476537 84476568 -78123362 + AT_rich Low_complexity Low_complexity 1 31 0 182 300 100 29 chrX 84476957 84477027 -78122903 + MIR SINE MIR 170 244 -18 2066 125 0 0 chrX 84479468 84479803 -78120127 + AluSx SINE Alu 1 335 0 12659 85 12 1 chrX 84480656 84482435 -78117495 + L1P LINE L1 2551 4349 -1797 1581 41 0 0 chrX 84483189 84483383 -78116547 + L1PA4 LINE L1 5959 6152 -3 418 88 0 29 chrX 84483395 84483463 -78116467 + L1MA8 LINE L1 6115 6180 -111 243 0 0 0 chrX 84483492 84483519 -78116411 + (CA)n Simple_repeat Simple_repeat 2 28 0 200 191 29 15 chrX 84483945 84484013 -78115917 + (TA)n Simple_repeat Simple_repeat 2 70 0 380 150 62 0 chrX 84485329 84485409 -78114521 - MER53 DNA DNA 0 189 105 4209 109 124 135 chrX 84485422 84486826 -78113104 + pTR5 LTR ERV1 375 2438 0 2117 108 14 0 chrX 84486828 84487124 -78112806 - AluSg SINE Alu -10 300 1 270 116 70 139 chrX 84487126 84487212 -78112718 + MER53 DNA DNA 110 189 0 248 143 48 24 chrX 84488162 84488246 -78111684 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 2879 3 0 0 chrX 84488927 84489237 -78110693 - AluYa5 SINE Alu -1 310 1 310 150 33 0 chrX 84491335 84491395 -78108535 + HSMAR2 DNA Mariner 2 63 -1239 1846 183 79 19 chrX 84491461 84491839 -78108091 + MSTB LTR MaLR 26 426 0 6677 226 32 30 chrX 84491843 84493160 -78106770 + MSTB-int LTR MaLR 5 1327 -324 2196 100 7 3 chrX 84493160 84493460 -78106470 + AluSc SINE Alu 1 301 -8 6677 226 32 30 chrX 84493460 84493715 -78106215 + MSTB-int LTR MaLR 1327 1580 -71 808 188 0 36 chrX 84493725 84493890 -78106040 + AluJo SINE Alu 14 172 -140 346 331 14 7 chrX 84494366 84494505 -78105425 + MLT1B LTR MaLR 251 390 0 525 288 86 42 chrX 84494505 84494875 -78105055 + L1MEc LINE L1 1732 2143 -4253 2311 138 22 0 chrX 84494875 84495231 -78104699 + THE1B LTR MaLR 1 364 0 525 288 86 42 chrX 84495231 84495502 -78104428 + L1MEc LINE L1 2143 2401 -3995 421 191 67 0 chrX 84495502 84495591 -78104339 + 7SLRNA srpRNA srpRNA 209 303 -17 398 307 32 0 chrX 84495623 84495812 -78104118 + L1MEc LINE L1 2397 2591 -3624 10871 227 28 21 chrX 84495818 84497415 -78102515 + L1PA16 LINE L1 709 2294 -4555 315 0 0 0 chrX 84497415 84497450 -78102480 + (CA)n Simple_repeat Simple_repeat 2 36 0 10871 227 28 21 chrX 84497450 84497491 -78102439 + L1PA16 LINE L1 2294 2333 -4516 2188 117 3 0 chrX 84497491 84497800 -78102130 - AluSx SINE Alu -2 310 1 10871 227 28 21 chrX 84497800 84500426 -78099504 + L1PA16 LINE L1 2333 4619 -2230 24 0 0 0 chrX 84500487 84500511 -78099419 + AT_rich Low_complexity Low_complexity 1 24 0 6026 161 15 16 chrX 84500516 84502118 -78097812 - L1MA1 LINE L1 0 7721 6121 15903 196 67 21 chrX 84502159 84504272 -78095658 - L1MA1 LINE L1 -2361 5204 3190 2610 153 7 5 chrX 84504272 84504698 -78095232 + MSTA LTR MaLR 2 428 0 7922 205 33 7 chrX 84504700 84506308 -78093622 + MSTA-int LTR MaLR 2 1651 0 2378 176 12 12 chrX 84506309 84506734 -78093196 + MSTA LTR MaLR 2 426 -2 15903 196 67 21 chrX 84506734 84509579 -78090351 - L1MA1 LINE L1 -4374 3191 12 5425 199 17 22 chrX 84509591 84510914 -78089016 + L1PA16 LINE L1 4632 5938 -931 1993 220 41 54 chrX 84510914 84511474 -78088456 + MLT2B3 LTR ERVL 1 553 -1 5425 199 17 22 chrX 84511474 84512402 -78087528 + L1PA16 LINE L1 5938 6869 0 366 289 81 30 chrX 84512400 84512635 -78087295 + L1M4 LINE L1 2529 2775 -3371 * 1132 299 15 52 chrX 84512682 84513221 -78086709 + LTR40a LTR ERVL 1 519 0 937 338 58 26 chrX 84513504 84514072 -78085858 + HERVL40 LTR ERVL 1032 1617 -3913 273 83 0 0 chrX 84514424 84514460 -78085470 - MLT2D LTR ERVL -6 408 373 415 181 16 94 chrX 84514460 84514523 -78085407 + L1M4 LINE L1 4918 4968 -1178 207 0 0 0 chrX 84514523 84514546 -78085384 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 415 181 16 94 chrX 84514546 84514609 -78085321 + L1M4 LINE L1 4968 5034 -1112 547 243 92 79 chrX 84514644 84515035 -78084895 - L1MC5 LINE L1 -409 7552 7157 2234 118 0 0 chrX 84515245 84515549 -78084381 + AluSx SINE Alu 1 304 -8 52 62 0 9 chrX 84515600 84515648 -78084282 + AT_rich Low_complexity Low_complexity 1 48 -63 1365 151 14 14 chrX 84515648 84515927 -78084003 + L1MA2 LINE L1 6025 6303 -1 52 62 0 9 chrX 84515927 84515990 -78083940 + AT_rich Low_complexity Low_complexity 48 111 0 3251 56 2 0 chrX 84516334 84516742 -78083188 - L1PA8 LINE L1 -257 5915 5507 3238 78 34 0 chrX 84516742 84517178 -78082752 + MER11B LTR ERVK 1 451 -785 408 314 26 6 chrX 84517179 84517335 -78082595 - L2 LINE L2 -1252 2062 1904 23 0 0 0 chrX 84518963 84518986 -78080944 + AT_rich Low_complexity Low_complexity 1 23 0 266 0 29 0 chrX 84519001 84519035 -78080895 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2226 95 7 0 chrX 84519042 84519338 -78080592 - AluSp SINE Alu -15 298 1 324 285 67 84 chrX 84520055 84520189 -78079741 + L1M4 LINE L1 2110 2245 -3901 1715 184 0 0 chrX 84520189 84520483 -78079447 - AluSx SINE Alu -12 300 7 324 285 67 84 chrX 84520483 84520706 -78079224 + L1M4 LINE L1 2245 2461 -3685 392 236 121 21 chrX 84520761 84520901 -78079029 - MER63 DNA MER1_type -51 785 6 353 314 131 21 chrX 84520917 84521492 -78078438 + L1M4 LINE L1 2472 3167 -2979 2274 99 0 3 chrX 84521492 84521794 -78078136 + AluY SINE Alu 3 303 -8 353 314 131 21 chrX 84521794 84522043 -78077887 + L1M4 LINE L1 3167 3387 -2759 30 59 0 0 chrX 84522318 84522369 -78077561 + AT_rich Low_complexity Low_complexity 1 51 0 1132 157 19 0 chrX 84522464 84522680 -78077250 + L1MA5 LINE L1 6081 6300 0 235 194 15 15 chrX 84522720 84522787 -78077143 + (TA)n Simple_repeat Simple_repeat 1 67 0 5731 109 14 21 chrX 84522788 84524809 -78075121 + L1PA12 LINE L1 4154 6163 -5 30 27 0 0 chrX 84524871 84524908 -78075022 + AT_rich Low_complexity Low_complexity 1 37 0 2754 130 22 38 chrX 84524908 84525414 -78074516 - L1PA14 LINE L1 -4 6157 5660 23 33 0 0 chrX 84525420 84525450 -78074480 + AT_rich Low_complexity Low_complexity 1 30 0 1231 248 36 8 chrX 84526046 84526405 -78073525 - L1ME LINE L1 -483 5683 5315 * 3472 236 47 35 chrX 84526400 84527775 -78072155 - L1MD2 LINE L1 -2 6357 4964 7368 132 13 2 chrX 84527836 84529793 -78070137 - L1PA8A LINE L1 0 6131 4165 * 16450 176 11 24 chrX 84529789 84530647 -78069283 + L1P3 LINE L1 835 1703 -4758 2379 62 0 13 chrX 84530647 84530951 -78068979 + AluY SINE Alu 1 300 -11 16450 176 11 24 chrX 84530951 84533524 -78066406 + L1P3 LINE L1 1703 4248 -2213 725 316 155 24 chrX 84533584 84534080 -78065850 - MER68 LTR ERV1 0 562 2 265 329 0 0 chrX 84534081 84534160 -78065770 - HERVL68 LTR ERVL -22 3015 2937 1015 137 6 0 chrX 84534517 84534699 -78065231 - L1MA4 LINE L1 -5 6295 6113 910 184 6 6 chrX 84534699 84534863 -78065067 - L1M1 LINE L1 -516 5784 5618 2324 81 3 0 chrX 84534892 84535212 -78064718 - L1PA7 LINE L1 -1 6153 5833 4671 76 2 0 chrX 84535212 84535831 -78064099 - L1PA7 LINE L1 -1459 4687 4068 * 12711 102 8 29 chrX 84535829 84537688 -78062242 - L1P3 LINE L1 -4203 2258 414 183 42 0 0 chrX 84537688 84537712 -78062218 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 12711 102 8 29 chrX 84537712 84538108 -78061822 - L1P3 LINE L1 -6047 414 11 1480 201 8 24 chrX 84538109 84538679 -78061251 - L1M1 LINE L1 -735 5565 5006 957 136 20 0 chrX 84538680 84538850 -78061080 - AluSg/x SINE Alu 0 306 134 1480 236 39 37 chrX 84538850 84539282 -78060648 - L1M1 LINE L1 -1131 5015 4583 * 6171 248 17 42 chrX 84539254 84539282 -78060648 - L1 LINE L1 -1157 4989 4962 4212 178 10 21 chrX 84539282 84539902 -78060028 - L1PA16 LINE L1 -6 6160 5531 4546 62 162 65 chrX 84539902 84540655 -78059275 + LTR12 LTR ERV1 1 826 0 4212 178 10 21 chrX 84540655 84541067 -78058863 - L1PA16 LINE L1 -635 5531 5116 6171 248 17 42 chrX 84541067 84541309 -78058621 - L1 LINE L1 -1184 4962 4715 2489 108 8 21 chrX 84541309 84541689 -78058241 + THE1C LTR MaLR 1 375 0 6171 248 17 42 chrX 84541689 84542005 -78057925 - L1 LINE L1 -1431 4715 4393 2355 82 0 19 chrX 84542005 84542322 -78057608 + AluY SINE Alu 1 311 0 6171 248 17 42 chrX 84542322 84543935 -78055995 - L1 LINE L1 -1753 4393 2843 1399 256 10 0 chrX 84543929 84544312 -78055618 + L1M1 LINE L1 2616 3002 -4563 * 3658 235 22 22 chrX 84544344 84545684 -78054246 + L1M1 LINE L1 3099 4440 -3125 185 0 40 0 chrX 84545684 84545709 -78054221 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 3658 235 22 22 chrX 84545709 84545813 -78054117 + L1M1 LINE L1 4439 4542 -3023 24 32 0 0 chrX 84545873 84545904 -78054026 + AT_rich Low_complexity Low_complexity 1 31 0 852 87 17 0 chrX 84546612 84546727 -78053203 + AluSg/x SINE Alu 174 290 -20 2120 187 23 2 chrX 84546735 84547162 -78052768 - L1MA8 LINE L1 -194 6097 5662 887 155 30 0 chrX 84547173 84547341 -78052589 + L1MA8 LINE L1 6115 6287 -4 813 221 69 38 chrX 84547482 84547771 -78052159 + L1MB8 LINE L1 5879 6176 -2 438 248 80 5 chrX 84548100 84548274 -78051656 + MLT1A1 LTR MaLR 1 196 -169 239 154 58 0 chrX 84548328 84548380 -78051550 + L1 LINE L1 2943 2997 -3149 540 231 66 0 chrX 84548393 84548514 -78051416 + MLT1A1 LTR MaLR 235 363 -2 335 192 13 0 chrX 84548945 84549023 -78050907 + (CTA)n Simple_repeat Simple_repeat 3 81 0 227 313 15 61 chrX 84549023 84549154 -78050776 - MIR SINE MIR -2 260 136 2959 158 17 31 chrX 84549224 84549811 -78050119 + L1MC1 LINE L1 5754 6332 -1 488 319 133 64 chrX 84549896 84550608 -78049322 + L2 LINE L2 2476 3253 -60 354 345 35 30 chrX 84550676 84550873 -78049057 + L1MC/D LINE L1 5545 5742 -2066 496 222 141 7 chrX 84551007 84551142 -78048788 - L1ME1 LINE L1 -312 5854 5702 2122 35 0 0 chrX 84551437 84551694 -78048236 - L1PA4 LINE L1 -5 6150 5894 23 33 0 0 chrX 84552072 84552102 -78047828 + AT_rich Low_complexity Low_complexity 1 30 0 1222 236 180 71 chrX 84553263 84553853 -78046077 - MLT1E1 LTR MaLR 0 654 1 362 332 44 48 chrX 84554150 84554379 -78045551 + MIR SINE MIR 22 249 -13 25 83 0 0 chrX 84554905 84554965 -78044965 + AT_rich Low_complexity Low_complexity 1 60 0 762 180 40 13 chrX 84555319 84555469 -78044461 - AluJo SINE Alu -59 253 100 283 217 0 17 chrX 84555471 84555539 -78044391 - AluJ/FLAM SINE Alu -245 57 2 381 280 102 60 chrX 84555868 84556211 -78043719 - L1ME4a LINE L1 -254 5867 5518 254 337 71 20 chrX 84556320 84556516 -78043414 - MLT1K LTR MaLR -16 572 367 2975 189 7 0 chrX 84556677 84557231 -78042699 - L1PA16 LINE L1 -8 6158 5601 1870 130 39 62 chrX 84558032 84558416 -78041514 - THE1C LTR MaLR 0 375 1 2247 108 3 0 chrX 84558590 84558895 -78041035 - AluSp SINE Alu -7 306 1 21 0 0 0 chrX 84559174 84559195 -78040735 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chrX 84560371 84560403 -78039527 + AT_rich Low_complexity Low_complexity 1 32 0 5097 261 21 18 chrX 84560619 84561727 -78038203 - L1PA13 LINE L1 -2854 3943 2839 1943 196 41 5 chrX 84561727 84562140 -78037790 + MSTA LTR MaLR 1 428 0 7116 228 5 28 chrX 84562140 84563830 -78036100 + MSTA-int LTR MaLR 1 1651 0 1918 234 12 2 chrX 84563830 84564254 -78035676 + MSTA LTR MaLR 1 428 0 5097 261 21 18 chrX 84564254 84565781 -78034149 - L1PA13 LINE L1 -3957 2840 1269 2454 300 18 50 chrX 84565836 84566743 -78033187 - L1PA13 LINE L1 -5909 878 1 3761 247 39 31 chrX 84566751 84568968 -78030962 + L1MB3 LINE L1 3946 6182 -1 27 62 0 0 chrX 84569562 84569610 -78030320 + AT_rich Low_complexity Low_complexity 1 48 0 34 24 0 0 chrX 84569785 84569826 -78030104 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrX 84570031 84570063 -78029867 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 84570893 84570921 -78029009 + AT_rich Low_complexity Low_complexity 1 28 0 1523 234 86 57 chrX 84570955 84571218 -78028712 + L1M4b LINE L1 968 1222 -5637 2053 243 79 33 chrX 84571218 84571876 -78028054 - MER76 LTR ERV 0 688 1 1523 234 86 57 chrX 84571876 84572227 -78027703 + L1M4b LINE L1 1222 1600 -5259 2978 193 9 28 chrX 84572258 84572342 -78027588 - L1PA15 LINE L1 -3 6162 6078 2528 50 0 0 chrX 84572342 84572644 -78027286 - AluY SINE Alu -9 302 1 2978 193 9 28 chrX 84572644 84573207 -78026723 - L1PA15 LINE L1 -87 6078 5527 4522 240 28 9 chrX 84573211 84574780 -78025150 - L1PA13 LINE L1 -3932 2865 1259 1896 322 38 13 chrX 84574843 84575530 -78024400 - L1PA13 LINE L1 -6083 704 1 656 297 29 4 chrX 84575700 84575973 -78023957 - L1M4 LINE L1 -3551 2595 2316 2747 224 51 87 chrX 84575977 84578036 -78021894 - L1MC1 LINE L1 0 6613 4636 6229 190 101 95 chrX 84578075 84579686 -78020244 - L1MC1 LINE L1 -3960 2647 1048 1795 161 68 8 chrX 84579686 84580040 -78019890 + THE1C LTR MaLR 1 375 0 6229 190 101 95 chrX 84580040 84580132 -78019798 - L1MC1 LINE L1 -5559 1048 958 201 74 0 0 chrX 84580132 84580159 -78019771 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6229 190 101 95 chrX 84580159 84580775 -78019155 - L1MC1 LINE L1 -5649 958 244 413 177 24 81 chrX 84580778 84580902 -78019028 + L1MC3 LINE L1 7668 7784 -1 308 279 70 0 chrX 84580976 84581062 -78018868 - MER81 DNA DNA -22 92 1 566 294 55 0 chrX 84581891 84582054 -78017876 + MER5B DNA MER1_type 7 178 0 29 47 0 0 chrX 84583164 84583207 -78016723 + AT_rich Low_complexity Low_complexity 1 43 0 1367 257 77 26 chrX 84583752 84584205 -78015725 + MLT2B1 LTR ERVL 1 483 -37 554 41 14 0 chrX 84584205 84584278 -78015652 + (CA)n Simple_repeat Simple_repeat 1 74 0 1367 257 77 26 chrX 84584278 84584319 -78015611 + MLT2B1 LTR ERVL 483 520 0 517 248 83 0 chrX 84585151 84585272 -78014658 + MER63 DNA MER1_type 656 786 -274 303 71 0 0 chrX 84585300 84585342 -78014588 + (TG)n Simple_repeat Simple_repeat 2 43 0 296 338 42 38 chrX 84586461 84586674 -78013256 + MIR SINE MIR 48 261 -1 438 244 81 52 chrX 84586784 84586956 -78012974 - MER5B DNA MER1_type -1 177 1 198 0 0 0 chrX 84587333 84587355 -78012575 + (CA)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chrX 84587355 84587385 -78012545 + (GA)n Simple_repeat Simple_repeat 1 30 0 447 265 104 14 chrX 84589784 84590063 -78009867 - L1M4 LINE L1 -1661 4485 4182 618 264 68 0 chrX 84590093 84590313 -78009617 - L1M4 LINE L1 -2029 4117 3883 868 233 0 0 chrX 84590328 84590491 -78009439 - MLT1A1 LTR MaLR -4 361 199 240 191 0 21 chrX 84590489 84590536 -78009394 - MLT1A1 LTR MaLR -328 46 1 * 805 274 31 0 chrX 84590589 84590844 -78009086 - L1M4 LINE L1 -2278 3868 3606 2172 247 55 14 chrX 84590856 84591645 -78008285 + L1M4 LINE L1 2584 3404 -2742 1038 248 38 35 chrX 84591649 84591967 -78007963 - MLT1C LTR MaLR -90 377 59 324 285 15 15 chrX 84591967 84592097 -78007833 - L1MEc LINE L1 -4706 1690 1561 3404 43 0 0 chrX 84592108 84592547 -78007383 + L1PA5 LINE L1 5721 6159 0 340 269 21 11 chrX 84592668 84592761 -78007169 + Zaphod DNA AcHobo 3937 4030 -1 465 210 266 42 chrX 84595130 84595344 -78004586 + MIR SINE MIR 1 262 0 2880 155 17 4 chrX 84595351 84595887 -78004043 - L1MA2 LINE L1 0 7723 7181 2278 182 34 2 chrX 84595887 84596294 -78003636 - MSTA LTR MaLR -1 427 8 280 136 0 0 chrX 84596300 84596344 -78003586 - L1MA2 LINE L1 -534 7187 7144 13656 174 47 51 chrX 84596401 84601478 -77998452 - L1MA2 LINE L1 -578 7145 2088 * 21086 176 8 7 chrX 84601477 84606381 -77993549 - L1PA11 LINE L1 0 6174 1271 9109 227 23 11 chrX 84606370 84606808 -77993122 - L1MA2 LINE L1 -5657 1908 1477 * 216 0 0 0 chrX 84606808 84606832 -77993098 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9109 227 23 11 chrX 84606832 84608278 -77991652 - L1MA2 LINE L1 -6088 1477 1 246 336 64 8 chrX 84608300 84608425 -77991505 + MIR SINE MIR 18 149 -113 312 140 0 0 chrX 84609123 84609173 -77990757 - AluSx SINE Alu -2 299 250 1570 110 0 0 chrX 84609175 84609384 -77990546 - AluSx SINE Alu -103 209 1 2058 117 7 0 chrX 84609638 84609940 -77989990 + AluSq SINE Alu 1 304 0 904 276 73 9 chrX 84610357 84610698 -77989232 - L1MB7 LINE L1 0 6184 5822 601 197 7 14 chrX 84610705 84610847 -77989083 - L1MB4 LINE L1 -1 6179 6039 672 244 21 17 chrX 84610861 84611099 -77988831 - L1M4 LINE L1 -2879 3267 3029 4278 199 12 23 chrX 84611110 84612025 -77987905 - L1MA5 LINE L1 -9 6291 5387 8738 213 40 37 chrX 84612037 84612979 -77986951 - L1MA4 LINE L1 -5 6477 5539 1988 106 34 7 chrX 84612979 84613272 -77986658 - AluSc SINE Alu -8 301 1 8738 213 40 37 chrX 84613272 84614608 -77985322 - L1MA4 LINE L1 -943 5539 4209 1931 149 16 7 chrX 84614608 84614917 -77985013 + AluSx SINE Alu 1 312 0 8738 213 40 37 chrX 84614917 84617462 -77982468 - L1MA4 LINE L1 -2273 4209 1659 2302 110 0 0 chrX 84617462 84617771 -77982159 + AluSg1 SINE Alu 1 309 0 8738 213 40 37 chrX 84617771 84619434 -77980496 - L1MA4 LINE L1 -4823 1659 3 2319 213 56 3 chrX 84619436 84620042 -77979888 - L1MA5 LINE L1 -746 5400 4763 3406 200 15 52 chrX 84620178 84620560 -77979370 - L1MA4 LINE L1 -308 5992 5598 1502 197 21 7 chrX 84620560 84620844 -77979086 - AluJb SINE Alu -19 293 6 3406 200 15 52 chrX 84620844 84621164 -77978766 - L1MA4 LINE L1 -702 5598 5268 1568 109 0 0 chrX 84621164 84621374 -77978556 - AluSq SINE Alu -103 210 1 3406 200 15 52 chrX 84621374 84621958 -77977972 - L1MA4 LINE L1 -1032 5268 4746 213 39 0 0 chrX 84621958 84621984 -77977946 + (TA)n Simple_repeat Simple_repeat 2 27 0 6662 72 7 0 chrX 84621989 84623415 -77976515 - L1PA7 LINE L1 -16 6138 4705 319 378 81 18 chrX 84623419 84623641 -77976289 - L1M4 LINE L1 -6012 530 295 4273 188 49 13 chrX 84623643 84624505 -77975425 + MER4D LTR ERV1 3 895 -8 380 196 85 72 chrX 84624590 84624743 -77975187 - L1M4 LINE L1 -6327 215 61 1215 303 60 11 chrX 84624824 84625455 -77974475 - L1M4c LINE L1 -4726 2233 1572 2950 142 66 6 chrX 84625461 84626040 -77973890 - MER4B LTR ERV1 0 779 1 677 234 79 36 chrX 84626041 84626293 -77973637 - L1M4c LINE L1 -5282 1577 1315 1784 123 13 23 chrX 84626328 84626636 -77973294 - MER61B-int LTR ERV1 -4507 710 406 302 147 120 13 chrX 84626638 84626713 -77973217 - MER61B-int LTR ERV1 -6336 755 673 725 219 16 49 chrX 84626734 84626917 -77973013 - MER61B-int LTR ERV1 -5039 178 2 1562 157 26 31 chrX 84626917 84627254 -77972676 - MER61B LTR ERV1 0 425 1 587 322 40 6 chrX 84627356 84627530 -77972400 - L1M4c LINE L1 -6435 424 245 4299 220 25 10 chrX 84627588 84628593 -77971337 + L1P LINE L1 3952 4971 -1175 2226 263 15 27 chrX 84628590 84629262 -77970668 + L1PB2 LINE L1 859 1522 -5341 * 9301 221 16 11 chrX 84629261 84631265 -77968665 + L1PB2 LINE L1 3297 5317 -1545 2463 80 0 3 chrX 84631265 84631577 -77968353 + AluY SINE Alu 1 311 0 9301 221 16 11 chrX 84631577 84631875 -77968055 + L1PB2 LINE L1 5317 5612 -1250 1946 160 129 11 chrX 84631878 84632259 -77967671 + MSTA LTR MaLR 1 426 -2 8771 152 23 35 chrX 84632263 84633859 -77966071 + MSTA-int LTR MaLR 3 1580 0 1868 157 128 11 chrX 84633860 84634242 -77965688 + MSTA LTR MaLR 2 428 0 3976 154 25 1 chrX 84634250 84635383 -77964547 + L1PB2 LINE L1 5619 6865 -2 2125 118 0 0 chrX 84635489 84635778 -77964152 + AluSc SINE Alu 1 289 -20 358 281 79 22 chrX 84635832 84635971 -77963959 + L2 LINE L2 3158 3304 -9 207 0 0 0 chrX 84636280 84636303 -77963627 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4391 201 28 12 chrX 84636303 84637948 -77961982 - L1PA16 LINE L1 -24 6142 4476 2053 216 11 0 chrX 84637947 84638409 -77961521 + L1PA16 LINE L1 4018 4484 -1662 * 2772 206 64 38 chrX 84638724 84639485 -77960445 - L1MC3 LINE L1 -8 7777 6997 4449 140 47 16 chrX 84639781 84640120 -77959810 - L1PB3 LINE L1 0 6154 5827 351 44 0 0 chrX 84640120 84640165 -77959765 + (TG)n Simple_repeat Simple_repeat 2 46 0 4449 140 47 16 chrX 84640165 84640620 -77959310 - L1PB3 LINE L1 -327 5827 5336 431 180 0 0 chrX 84640579 84640668 -77959262 + L1MCa LINE L1 1937 2025 -4401 * 21 36 0 0 chrX 84640674 84640702 -77959228 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrX 84640808 84640832 -77959098 + AT_rich Low_complexity Low_complexity 1 24 0 2341 74 0 0 chrX 84641204 84641534 -77958396 - AluY SINE Alu 0 330 1 10085 217 112 26 chrX 84641536 84642355 -77957575 - L1PA15 LINE L1 -5 6811 6064 2148 108 14 0 chrX 84642355 84642652 -77957278 + AluY SINE Alu 2 302 -9 10085 217 112 26 chrX 84642652 84643720 -77956210 - L1PA15 LINE L1 -752 6064 5089 2199 123 0 0 chrX 84643720 84644013 -77955917 - AluSx SINE Alu -19 293 1 10085 217 112 26 chrX 84644013 84646367 -77953563 - L1PA15 LINE L1 -1727 5089 2172 2385 260 10 17 chrX 84646368 84646944 -77952986 - L1PA15 LINE L1 -4985 1802 1231 263 350 15 7 chrX 84646968 84647105 -77952825 - L1PA12 LINE L1 -5262 2319 2182 508 299 52 54 chrX 84648070 84648458 -77951472 - L1PA12 LINE L1 -7188 393 7 2655 52 0 0 chrX 84649507 84649816 -77950114 - AluY SINE Alu -2 309 1 3346 238 61 7 chrX 84650167 84651289 -77948641 + L1PBb LINE L1 782 2045 -4158 5793 213 15 9 chrX 84651305 84653617 -77946313 - L1PA16 LINE L1 -9 6157 3840 2473 122 0 3 chrX 84653635 84654004 -77945926 - L1PB1 LINE L1 -3 6148 5781 258 141 31 16 chrX 84654004 84654068 -77945862 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 3428 111 14 41 chrX 84654071 84654760 -77945170 - L1PB1 LINE L1 -367 5784 5107 7896 199 35 14 chrX 84654762 84656591 -77943339 + L1 LINE L1 3100 4967 -1179 978 232 36 0 chrX 84656599 84656819 -77943111 + L1PBb LINE L1 2031 2258 -3945 * 3095 225 19 14 chrX 84656808 84657617 -77942313 - L1PB1 LINE L1 -1568 4578 3766 1161 261 23 51 chrX 84657620 84658146 -77941784 - L1PB1 LINE L1 -3186 2960 2450 4640 157 27 27 chrX 84658149 84659076 -77940854 + L1PA16 LINE L1 5224 6140 -26 521 273 11 71 chrX 84659264 84659447 -77940483 + MIR SINE MIR 81 252 -10 2484 65 0 3 chrX 84659469 84659776 -77940154 - AluY SINE Alu -5 306 1 245 343 87 19 chrX 84660223 84660430 -77939500 + MIR SINE MIR 31 251 -11 964 220 6 0 chrX 84661031 84661213 -77938717 + MER5A DNA MER1_type 1 183 -6 351 0 0 0 chrX 84661245 84661254 -77938676 + (TG)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chrX 84661254 84661293 -77938637 + (TG)n Simple_repeat Simple_repeat 1 39 0 241 213 200 0 chrX 84661471 84661551 -77938379 - L1ME3A LINE L1 -5 6165 6070 6422 201 29 16 chrX 84662076 84664025 -77935905 - HERVL74 LTR ERVL -2389 3296 1291 650 191 25 44 chrX 84664127 84664332 -77935598 - HERVL74 LTR ERVL -2345 1211 1020 222 114 45 23 chrX 84664346 84664420 -77935510 + CT-rich Low_complexity Low_complexity 1 75 0 691 258 45 17 chrX 84664424 84664602 -77935328 - HERVL74 LTR ERVL -2594 962 780 2781 180 92 43 chrX 84715057 84716238 -77883692 + MER4A-int LTR ERV1 924 2046 -4552 4376 23 6 0 chrX 84716238 84716758 -77883172 + L1PA4 LINE L1 5631 6153 -2 2781 180 92 43 chrX 84716758 84717193 -77882737 + MER4A-int LTR ERV1 2046 3681 -2917 * 13667 148 42 36 chrX 84717192 84717553 -77882377 + MER4A-int LTR ERV1 3837 4194 -2404 2408 93 0 0 chrX 84717553 84717865 -77882065 + AluSq SINE Alu 1 312 -1 13667 148 42 36 chrX 84717865 84720249 -77879681 + MER4A-int LTR ERV1 4194 6598 0 601 143 0 10 chrX 84720250 84720348 -77879582 + MER4A LTR ERV1 1 97 -567 * 1959 133 3 16 chrX 84720345 84720699 -77879231 + MER4A LTR ERV1 257 664 0 22 35 0 0 chrX 84720777 84720806 -77879124 + AT_rich Low_complexity Low_complexity 1 29 0 223 290 314 8 chrX 84720916 84721040 -77878890 - MIR3 SINE MIR -44 164 3 2311 192 24 4 chrX 84721153 84721613 -77878317 + MER34C LTR ERV1 1 470 -115 657 128 39 0 chrX 84721613 84721715 -77878215 + MER83 LTR ERV1 1 106 -342 * 1215 172 86 135 chrX 84721704 84722135 -77877795 + MER83 LTR ERV1 39 448 0 5021 177 14 63 chrX 84722179 84722278 -77877652 + MER83-int LTR ERV1 18 120 -4165 3393 160 18 74 chrX 84722278 84723009 -77876921 - LTR8 LTR ERV1 -1 690 1 5021 177 14 63 chrX 84723009 84723931 -77875999 + MER83-int LTR ERV1 120 989 -3296 3789 156 57 56 chrX 84723913 84724304 -77875626 + MER83-int LTR ERV1 1080 1469 -317 * 192 40 0 0 chrX 84724304 84724329 -77875601 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3789 156 57 56 chrX 84724329 84724541 -77875389 + MER83-int LTR ERV1 1469 1059 -727 2377 89 0 0 chrX 84724541 84724843 -77875087 + AluSq SINE Alu 1 302 -11 3789 156 57 56 chrX 84724843 84725384 -77874546 + MER83-int LTR ERV1 1058 1597 -189 2878 148 64 48 chrX 84725382 84725950 -77873980 + MER83-int LTR ERV1 2231 2811 -2069 * 1809 139 82 23 chrX 84725950 84726303 -77873627 - THE1C LTR MaLR -1 374 1 2878 148 64 48 chrX 84726303 84726342 -77873588 + MER83-int LTR ERV1 2811 2848 -2032 272 141 203 0 chrX 84726338 84726402 -77873528 + MER83-int LTR ERV1 2987 3063 -1817 * 1687 188 59 112 chrX 84726397 84727041 -77872889 + MER83-int LTR ERV1 4065 4674 -1272 1941 201 32 88 chrX 84727041 84727232 -77872698 + LTR8 LTR ERV1 1 201 -490 275 0 0 28 chrX 84727232 84727268 -77872662 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1941 201 32 88 chrX 84727268 84727667 -77872263 + LTR8 LTR ERV1 201 558 -133 1212 137 59 0 chrX 84727667 84727871 -77872059 + MER83-int LTR ERV1 4944 5159 -1172 476 167 53 9 chrX 84727871 84727985 -77871945 + MER83 LTR ERV1 298 416 -32 464 154 86 60 chrX 84727989 84728106 -77871824 + MER34C LTR ERV1 466 585 0 3590 185 62 51 chrX 84728757 84729652 -77870278 - MER4D LTR ERV1 0 866 1 285 109 0 0 chrX 84731411 84731457 -77868473 + (TG)n Simple_repeat Simple_repeat 1 46 0 831 149 0 0 chrX 84731884 84732005 -77867925 - FLAM_C SINE Alu -12 131 11 224 230 46 11 chrX 84732017 84732104 -77867826 + (CATA)n Simple_repeat Simple_repeat 3 92 0 25 65 0 0 chrX 84732604 84732650 -77867280 + AT_rich Low_complexity Low_complexity 1 46 0 383 351 107 30 chrX 84733138 84733540 -77866390 + L1M4 LINE L1 3366 3798 -2348 1565 221 0 10 chrX 84733720 84734027 -77865903 - AluJo SINE Alu -7 305 2 520 172 0 0 chrX 84734152 84734239 -77865691 + AluJ/FLAM SINE Alu 1 87 -225 2035 167 45 6 chrX 84734239 84734592 -77865338 - MER39B LTR ERV1 -284 369 3 631 315 106 14 chrX 84734660 84734952 -77864978 + MLT1L LTR MaLR 297 615 0 2280 121 0 0 chrX 84735044 84735357 -77864573 + AluSq SINE Alu 1 313 0 225 365 21 21 chrX 84735365 84735461 -77864469 - MIR SINE MIR -160 102 7 305 281 156 12 chrX 84735484 84735644 -77864286 - L1ME LINE L1 -318 5803 5621 21 57 0 0 chrX 84736869 84736904 -77863026 + AT_rich Low_complexity Low_complexity 1 35 0 367 261 39 2 chrX 84736905 84737063 -77862867 - L1ME LINE L1 -715 5436 5263 825 231 60 37 chrX 84737195 84737464 -77862466 - L1ME3 LINE L1 0 6162 5888 438 273 58 13 chrX 84737599 84737753 -77862177 - MLT1L LTR MaLR -339 276 116 23 54 0 0 chrX 84737920 84737957 -77861973 + AT_rich Low_complexity Low_complexity 1 37 0 24 91 0 0 chrX 84738263 84738329 -77861601 + AT_rich Low_complexity Low_complexity 1 66 0 24 91 0 0 chrX 84738517 84738583 -77861347 + AT_rich Low_complexity Low_complexity 1 66 0 29 28 0 0 chrX 84738884 84738920 -77861010 + AT_rich Low_complexity Low_complexity 1 36 0 1555 241 123 2 chrX 84738920 84739344 -77860586 + MLT1D LTR MaLR 29 503 -2 219 114 0 0 chrX 84741340 84741375 -77858555 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 159 0 0 chrX 84741966 84742010 -77857920 + (TA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chrX 84742791 84742813 -77857117 + AT_rich Low_complexity Low_complexity 1 22 0 312 305 52 63 chrX 84743167 84743296 -77856634 + L1M4 LINE L1 3900 4029 -2117 2436 62 0 0 chrX 84743296 84743586 -77856344 + AluY SINE Alu 1 290 -21 312 305 52 63 chrX 84743586 84743725 -77856205 + L1M4 LINE L1 4029 4165 -1981 25 51 0 0 chrX 84743962 84744001 -77855929 + AT_rich Low_complexity Low_complexity 1 39 0 1405 193 0 87 chrX 84744378 84744700 -77855230 - AluJo SINE Alu -18 294 1 25 65 0 0 chrX 84745502 84745548 -77854382 + AT_rich Low_complexity Low_complexity 1 46 0 712 225 0 0 chrX 84745905 84746034 -77853896 - FLAM_C SINE Alu -4 129 1 189 0 0 0 chrX 84746065 84746086 -77853844 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chrX 84746565 84746586 -77853344 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chrX 84746785 84746833 -77853097 + AT_rich Low_complexity Low_complexity 1 48 0 206 189 0 19 chrX 84747082 84747135 -77852795 + (TA)n Simple_repeat Simple_repeat 1 52 0 624 227 8 0 chrX 84747156 84747284 -77852646 - FLAM_C SINE Alu -14 129 1 1648 225 14 15 chrX 84747805 84748167 -77851763 + MLT1A1 LTR MaLR 1 365 0 335 250 0 13 chrX 84748171 84748247 -77851683 - MER5B DNA MER1_type -20 158 84 5664 168 50 8 chrX 84748820 84750720 -77849210 + L1MA2 LINE L1 4320 6303 -1 1396 197 25 18 chrX 84751389 84751673 -77848257 + AluJo SINE Alu 1 286 -16 2006 142 2 5 chrX 84753186 84753737 -77846193 - MER4B LTR ERV1 0 610 1 455 313 28 86 chrX 84753826 84754117 -77845813 - L2 LINE L2 -1058 2256 1983 755 196 0 0 chrX 84754117 84754250 -77845680 + AluJ SINE Alu 1 133 -169 971 172 0 33 chrX 84754252 84754295 -77845635 + AluJ SINE Alu 128 171 -141 3249 124 2 4 chrX 84754295 84754756 -77845174 - LTR46 LTR ERV1 0 460 1 971 172 0 33 chrX 84754756 84754892 -77845038 + AluJ SINE Alu 171 301 -11 453 288 19 39 chrX 84754894 84754938 -77844992 - L2 LINE L2 -1327 1987 1944 1771 194 48 8 chrX 84754938 84755289 -77844641 - MLT1A1 LTR MaLR 0 365 1 453 288 19 39 chrX 84755289 84755449 -77844481 - L2 LINE L2 -1370 1944 1787 601 228 192 30 chrX 84755595 84755929 -77844001 - L1MC5 LINE L1 -76 7885 7498 573 313 0 34 chrX 84755929 84756108 -77843822 + MER5B DNA MER1_type 1 173 -5 661 225 8 0 chrX 84756342 84756471 -77843459 - FLAM_C SINE Alu -11 132 3 8244 189 65 79 chrX 84756689 84757068 -77842862 - L1PB3 LINE L1 -8 7208 6825 354 44 0 0 chrX 84757068 84757113 -77842817 - U5 snRNA snRNA -71 45 1 8244 189 65 79 chrX 84757113 84759932 -77839998 - L1PB3 LINE L1 -391 6825 4014 1421 210 10 21 chrX 84759960 84760251 -77839679 + AluJo SINE Alu 6 293 -19 2148 245 30 13 chrX 84760294 84760903 -77839027 - L1PB3 LINE L1 -3264 3944 3326 1923 146 7 10 chrX 84760926 84761228 -77838702 + AluJb SINE Alu 5 305 -7 1177 241 7 7 chrX 84761287 84761612 -77838318 - AluJo SINE Alu 0 325 1 3897 231 66 16 chrX 84761618 84763107 -77836823 - L1PBb LINE L1 -3944 2260 698 322 200 25 25 chrX 84763110 84763190 -77836740 - L1PBb LINE L1 -5540 664 585 605 76 0 0 chrX 84763190 84763269 -77836661 - MSTA LTR MaLR -349 79 1 8507 190 25 5 chrX 84763269 84764887 -77835043 - MSTA-int LTR MaLR 0 1651 1 1699 209 103 3 chrX 84764909 84765287 -77834643 - MSTA LTR MaLR -12 416 1 2012 271 10 4 chrX 84765288 84765775 -77834155 - L1PBb LINE L1 -5704 500 11 668 306 5 0 chrX 84765752 84765958 -77833972 - L1PB3 LINE L1 -5226 978 772 * 304 340 5 12 chrX 84766248 84766434 -77833496 - L1PB3 LINE L1 -6699 4294966801 -983 * 1867 325 36 51 chrX 84766421 84766797 -77833133 - L1PBa LINE L1 -5419 1443 1063 1760 164 4 0 chrX 84766797 84767071 -77832859 - AluSx SINE Alu -37 275 1 1867 325 36 51 chrX 84767071 84768221 -77831709 - L1PBa LINE L1 -5799 1063 39 357 260 35 0 chrX 84768350 84768519 -77831411 + (TA)n Simple_repeat Simple_repeat 1 175 0 26 50 0 0 chrX 84768636 84768676 -77831254 + AT_rich Low_complexity Low_complexity 1 40 0 529 252 0 9 chrX 84768680 84768795 -77831135 - FLAM_A SINE Alu -16 117 4 180 365 19 0 chrX 84768868 84768920 -77831010 - L2 LINE L2 -58 3214 3162 6376 144 25 15 chrX 84768929 84769980 -77829950 + THE1-int LTR MaLR 107 1167 -413 1405 209 22 25 chrX 84769983 84770303 -77829627 + THE1C LTR MaLR 54 372 -3 4941 217 16 6 chrX 84770306 84771448 -77828482 - L1P LINE L1 -2912 3234 2082 * 10558 206 31 19 chrX 84771434 84772239 -77827691 - L1M1 LINE L1 -743 5403 4609 1894 141 0 3 chrX 84772239 84772564 -77827366 + AluSq SINE Alu 3 326 0 10558 206 31 19 chrX 84772564 84774449 -77825481 - L1M1 LINE L1 -1537 4609 2772 22 0 0 0 chrX 84774449 84774471 -77825459 + AT_rich Low_complexity Low_complexity 1 22 0 1740 172 3 35 chrX 84774489 84774803 -77825127 + AluJo SINE Alu 1 304 -8 247 139 0 0 chrX 84774824 84774860 -77825070 - Alu SINE Alu -265 36 1 2591 232 40 55 chrX 84774867 84775850 -77824080 - L1M4 LINE L1 -2164 3982 3015 1389 222 10 26 chrX 84775850 84776152 -77823778 - AluJo SINE Alu -11 301 5 2591 232 40 55 chrX 84776152 84776257 -77823673 - L1M4 LINE L1 -3131 3015 2910 293 238 20 79 chrX 84776277 84776378 -77823552 - MLT1J2 LTR MaLR -289 161 67 203 281 0 18 chrX 84776602 84776659 -77823271 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 1577 189 4 25 chrX 84777176 84777457 -77822473 + AluJo SINE Alu 3 277 -35 203 0 37 0 chrX 84777613 84777640 -77822290 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 285 346 0 12 chrX 84778194 84778275 -77821655 - MER91B DNA MER1_type -110 80 1 279 79 0 0 chrX 84779140 84779178 -77820752 + (TA)n Simple_repeat Simple_repeat 2 39 0 1549 183 17 24 chrX 84779178 84779467 -77820463 - AluJb SINE Alu -20 292 6 513 239 151 21 chrX 84781671 84781895 -77818035 + MLT1F1 LTR MaLR 294 547 -2 323 315 45 0 chrX 84781947 84782036 -77817894 - MIR SINE MIR -74 134 42 1225 250 29 44 chrX 84782199 84782405 -77817525 - MLT1F LTR MaLR 0 542 334 2451 116 16 5 chrX 84782405 84782776 -77817154 - THE1C LTR MaLR 0 375 1 9180 131 31 40 chrX 84782776 84784370 -77815560 - THE1C-int LTR MaLR 0 1580 1 2229 151 11 5 chrX 84784372 84784742 -77815188 - THE1C LTR MaLR -2 373 2 1225 250 29 44 chrX 84784742 84784960 -77814970 - MLT1F LTR MaLR -208 334 122 550 211 64 75 chrX 84785468 84785734 -77814196 + HERVL40 LTR ERVL 625 887 -2150 382 203 129 37 chrX 84785942 84786153 -77813777 + HERVL40 LTR ERVL 2669 2938 -2592 953 237 40 4 chrX 84786298 84786526 -77813404 + HERVL40 LTR ERVL 4425 4660 -870 1124 250 59 68 chrX 84786597 84787021 -77812909 + HERVL40 LTR ERVL 2297 2716 -321 299 136 30 45 chrX 84787189 84787255 -77812675 + HERVL40 LTR ERVL 2719 2783 -254 749 270 55 12 chrX 84787322 84787640 -77812290 + HERVL40 LTR ERVL 2780 5503 -27 343 257 118 15 chrX 84787821 84787957 -77811973 - LTR68 LTR ERV1 -303 437 288 421 333 33 6 chrX 84788107 84788287 -77811643 - LTR68 LTR ERV1 -555 185 1 460 319 36 35 chrX 84788289 84788552 -77811378 - MLT1F-int LTR MaLR -878 493 215 863 260 71 50 chrX 84788562 84789115 -77810815 + LTR48B LTR ERV1 25 629 -15 269 336 8 0 chrX 84789136 84789255 -77810675 - MLT1F-int LTR MaLR -1250 121 2 817 281 14 0 chrX 84789292 84789502 -77810428 - MLT1F LTR MaLR -61 481 269 1136 219 47 86 chrX 84789508 84790010 -77809920 - MER39 LTR ERV1 -5 686 1 506 268 42 13 chrX 84790018 84790231 -77809699 - MLT1F LTR MaLR -280 262 1 13317 25 0 1 chrX 84790506 84792080 -77807850 - L1PA3 LINE L1 -951 5195 3623 7283 41 2 3 chrX 84792081 84793055 -77806875 + L1PA3 LINE L1 5178 6150 -5 803 161 0 0 chrX 84794384 84794508 -77805422 + FLAM_C SINE Alu 1 124 -9 380 341 93 16 chrX 84794929 84795111 -77804819 + MER91A DNA MER1_type 1 196 0 32 81 0 0 chrX 84795187 84795261 -77804669 + AT_rich Low_complexity Low_complexity 1 74 0 1571 184 13 67 chrX 84796135 84796448 -77803482 + MER92A LTR ERV1 57 349 -63 1830 125 3 21 chrX 84796448 84796776 -77803154 - AluSx SINE Alu 0 323 1 1571 184 13 67 chrX 84796776 84796837 -77803093 + MER92A LTR ERV1 349 412 0 2347 81 0 3 chrX 84798169 84798465 -77801465 + AluSc SINE Alu 1 295 -14 26 0 0 0 chrX 84798556 84798582 -77801348 + AT_rich Low_complexity Low_complexity 1 26 0 595 177 10 0 chrX 84798788 84798884 -77801046 - Tigger7 DNA MER2_type -1 2490 2394 1247 196 89 0 chrX 84798886 84799111 -77800819 - Tigger7 DNA MER2_type -2224 263 19 575 120 0 60 chrX 84799673 84799773 -77800157 + LTR29 LTR ERV1 1 94 -528 * 1607 144 20 4 chrX 84799756 84800006 -77799924 + LTR29 LTR ERV1 369 622 0 1753 201 30 80 chrX 84800009 84800756 -77799174 + LTR29-int LTR ERV1 3 1610 -4653 784 179 75 71 chrX 84800755 84801007 -77798923 + LTR49-int LTR ERV1 771 1023 -5308 * 917 137 0 39 chrX 84801015 84801168 -77798762 - MER4D LTR ERV1 -9 894 748 1803 208 75 102 chrX 84801168 84801915 -77798015 - LTR8A LTR ERV1 0 727 1 2049 181 24 19 chrX 84801915 84802334 -77797596 - LTR8A LTR ERV1 -306 421 1 3242 191 26 39 chrX 84802341 84803083 -77796847 - MER4D LTR ERV1 -171 732 1 1259 215 74 15 chrX 84803109 84803435 -77796495 + LTR49-int LTR ERV1 1054 1398 -4933 1079 204 67 41 chrX 84803531 84803801 -77796129 + LTR49-int LTR ERV1 1392 1668 -4663 2252 163 10 20 chrX 84803801 84804200 -77795730 - MER57A LTR ERV1 -8 395 1 1620 88 118 0 chrX 84804201 84804439 -77795491 - MER57A-int LTR ERV1 -2 7535 7270 695 136 25 8 chrX 84804440 84804558 -77795372 - LTR54B LTR ERV1 -374 124 5 11363 87 12 0 chrX 84804558 84806331 -77793599 - MER57A-int LTR ERV1 -387 7150 5315 30956 120 18 20 chrX 84806331 84807299 -77792631 - MER57A-int LTR ERV1 -2331 5206 4237 1714 51 0 0 chrX 84807299 84807516 -77792414 + L1PA5 LINE L1 5938 6154 0 30956 120 18 20 chrX 84807516 84811483 -77788447 - MER57A-int LTR ERV1 -3300 4237 1 1928 194 20 20 chrX 84811483 84811886 -77788044 - MER57A LTR ERV1 0 403 1 362 162 10 50 chrX 84811906 84812005 -77787925 + LTR49-int LTR ERV1 1673 1767 -4564 434 236 19 38 chrX 84812068 84812174 -77787756 + LTR49-int LTR ERV1 2058 2161 -4170 8050 194 59 81 chrX 84812182 84814688 -77785242 + LTR49-int LTR ERV1 2595 5039 -1292 183 42 0 0 chrX 84814688 84814712 -77785218 + (TG)n Simple_repeat Simple_repeat 1 24 0 8050 194 59 81 chrX 84814712 84814881 -77785049 + LTR49-int LTR ERV1 5039 5210 -1121 2547 233 44 2 chrX 84814881 84815513 -77784417 + L1 LINE L1 4497 5155 -991 * 3968 248 63 41 chrX 84815501 84817052 -77782878 + L1MB7 LINE L1 3546 5137 -1009 221 56 0 28 chrX 84817052 84817088 -77782842 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3968 248 63 41 chrX 84817088 84817177 -77782753 + L1MB7 LINE L1 5137 5223 -923 2977 196 42 3 chrX 84817197 84817839 -77782091 + L1MB7 LINE L1 5256 5922 -262 3195 74 2 0 chrX 84817839 84818242 -77781688 + MLT2A1 LTR ERVL 1 404 -40 260 155 0 17 chrX 84818242 84818300 -77781630 + (TA)n Simple_repeat Simple_repeat 2 58 0 308 85 0 68 chrX 84818352 84818411 -77781519 + MLT2A1 LTR ERVL 390 444 0 1453 80 0 5 chrX 84818411 84818610 -77781320 + HERVL-A1 LTR ERVL 1 198 -5456 1888 112 7 14 chrX 84818610 84818886 -77781044 + AluSx SINE Alu 19 292 -20 318 47 0 0 chrX 84819159 84819202 -77780728 + MADE1 DNA Mariner 38 80 0 3371 269 39 23 chrX 84819202 84820753 -77779177 - L1M4c LINE L1 -4560 2086 519 255 31 0 0 chrX 84820754 84820786 -77779144 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5266 49 22 10 chrX 84820797 84821474 -77778456 - L1PA7 LINE L1 -5 6149 5465 3125 71 57 0 chrX 84821474 84821896 -77778034 + L1P LINE L1 3953 4398 -1748 1369 284 70 21 chrX 84821890 84822359 -77777571 - L1M4c LINE L1 -6018 524 33 * 21 71 0 0 chrX 84822393 84822435 -77777495 + AT_rich Low_complexity Low_complexity 1 42 0 840 202 0 22 chrX 84822781 84822959 -77776971 - AluJb SINE Alu -1 311 138 872 338 58 8 chrX 84823362 84823759 -77776171 + ERVL LTR ERVL 2083 2499 -3265 * 1195 308 30 17 chrX 84823751 84824324 -77775606 + ERVL LTR ERVL 3351 3982 -1782 1278 214 50 70 chrX 84824353 84824751 -77775179 + MLT1B LTR MaLR 1 390 0 411 205 12 0 chrX 84824751 84824834 -77775096 + MLT1B-int LTR MaLR 1 84 -1287 878 190 0 65 chrX 84825883 84826067 -77773863 + AluJ SINE Alu 7 178 -134 1994 139 0 23 chrX 84826092 84826402 -77773528 - AluSx SINE Alu -9 303 1 622 184 18 0 chrX 84826437 84826546 -77773384 + AluJ SINE Alu 169 279 -33 207 0 0 0 chrX 84826555 84826578 -77773352 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 387 361 46 48 chrX 84826843 84827236 -77772694 + HAL1 LINE L1 1025 1416 -1091 281 279 12 0 chrX 84827381 84827467 -77772463 - MLT1J2 LTR MaLR -23 427 341 238 213 47 93 chrX 84827738 84827888 -77772042 - HAL1 LINE L1 -1359 1148 1006 307 298 53 18 chrX 84828149 84828377 -77771553 + L1ME LINE L1 4417 4652 -1494 308 322 26 0 chrX 84828444 84828559 -77771371 - L1MC/D LINE L1 -907 5452 5335 23 68 0 0 chrX 84828571 84828615 -77771315 + AT_rich Low_complexity Low_complexity 1 44 0 235 194 15 15 chrX 84828615 84828682 -77771248 + T-rich Low_complexity Low_complexity 3 69 0 506 261 92 11 chrX 84828722 84829041 -77770889 + L1ME LINE L1 5130 5474 -688 296 233 33 33 chrX 84829059 84829179 -77770751 - L1M4c LINE L1 -3069 3313 3194 10835 177 40 50 chrX 84829213 84829975 -77769955 - L1PBa LINE L1 -4466 2397 1629 2377 74 3 3 chrX 84829975 84830286 -77769644 - AluY SINE Alu 0 311 1 10835 177 40 50 chrX 84830286 84831944 -77767986 - L1PBa LINE L1 -5234 1629 1 496 325 149 54 chrX 84832091 84832673 -77767257 - L1M4c LINE L1 -4512 1870 1345 705 171 0 0 chrX 84832673 84832802 -77767128 - L1MA10 LINE L1 0 6334 6206 496 325 149 54 chrX 84832802 84833072 -77766858 - L1M4c LINE L1 -5037 1345 803 906 377 30 21 chrX 84833421 84833989 -77765941 + ERVL LTR ERVL 2020 2592 -3172 1037 251 8 8 chrX 84834098 84834333 -77765597 - MER74C LTR ERVL -26 434 200 2167 137 91 8 chrX 84834349 84834743 -77765187 - MSTA LTR MaLR 0 428 2 6102 166 8 36 chrX 84834744 84835935 -77763995 - MSTA-int LTR MaLR 0 1580 426 234 230 46 35 chrX 84836245 84836332 -77763598 - HAL1 LINE L1 -1026 1481 1394 505 292 130 9 chrX 84836357 84836672 -77763258 - L1MEd LINE L1 -4862 1257 905 1916 141 10 3 chrX 84836761 84837058 -77762872 - AluSc SINE Alu -10 299 1 277 368 86 25 chrX 84837266 84837581 -77762349 - L1MEd LINE L1 -5538 581 248 24 0 0 0 chrX 84837644 84837668 -77762262 + AT_rich Low_complexity Low_complexity 1 24 0 306 325 27 53 chrX 84837685 84837873 -77762057 - L1MEd LINE L1 -5918 201 19 21 0 0 0 chrX 84837885 84837906 -77762024 + AT_rich Low_complexity Low_complexity 1 21 0 201 146 0 0 chrX 84839142 84839190 -77760740 + (TA)n Simple_repeat Simple_repeat 2 49 0 228 250 0 0 chrX 84839221 84839285 -77760645 - L1MC4 LINE L1 -1339 6703 6640 301 89 0 36 chrX 84839349 84839405 -77760525 - LTR66 LTR ERVL -163 447 394 305 267 11 11 chrX 84839462 84839552 -77760378 + L1MC4 LINE L1 6616 6705 -1337 3812 139 65 63 chrX 84839966 84840749 -77759181 - LTR1 LTR ERV1 0 785 1 24 0 0 0 chrX 84840984 84841008 -77758922 + AT_rich Low_complexity Low_complexity 1 24 0 1383 195 0 21 chrX 84841234 84841516 -77758414 + AluJo SINE Alu 21 296 -16 206 179 18 0 chrX 84841825 84841881 -77758049 + (TA)n Simple_repeat Simple_repeat 1 57 0 27 49 0 0 chrX 84842497 84842538 -77757392 + AT_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chrX 84842755 84842798 -77757132 + AT_rich Low_complexity Low_complexity 1 43 0 526 290 125 13 chrX 84843167 84843391 -77756539 - MIR SINE MIR -13 249 1 24 53 0 0 chrX 84844226 84844264 -77755666 + AT_rich Low_complexity Low_complexity 1 38 0 4312 43 2 0 chrX 84844826 84845358 -77754572 + L1PA4 LINE L1 5621 6153 -2 25 31 0 0 chrX 84845701 84845733 -77754197 + AT_rich Low_complexity Low_complexity 1 32 0 369 303 48 69 chrX 84845853 84846041 -77753889 - MIR SINE MIR -45 217 34 350 285 95 15 chrX 84846030 84846167 -77753763 + MIR3 SINE MIR 60 207 -1 * 1040 239 11 21 chrX 84846209 84846489 -77753441 - L1MD2 LINE L1 -5 6354 6078 1821 129 0 14 chrX 84846521 84846799 -77753131 - THE1C LTR MaLR 0 375 102 8955 137 60 4 chrX 84846803 84848299 -77751631 - THE1C-int LTR MaLR 0 1580 1 2276 147 22 3 chrX 84848299 84848667 -77751263 - THE1C LTR MaLR 0 375 1 2049 259 68 24 chrX 84848668 84849638 -77750292 - L1M4 LINE L1 -2466 3680 2668 1361 192 25 182 chrX 84849632 84850196 -77749734 + L1 LINE L1 4559 4987 -1159 * 1208 227 70 3 chrX 84850196 84850308 -77749622 + AluJo SINE Alu 1 104 -208 356 0 0 22 chrX 84850308 84850353 -77749577 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1208 227 70 3 chrX 84850353 84850526 -77749404 + AluJo SINE Alu 104 305 -7 1361 192 25 182 chrX 84850526 84850681 -77749249 + L1 LINE L1 4987 5165 -981 2778 172 17 4 chrX 84850686 84851206 -77748724 - L1MA2 LINE L1 0 6304 5775 1883 167 0 10 chrX 84851206 84851518 -77748412 - AluSx SINE Alu -3 309 1 18514 216 33 51 chrX 84851527 84859287 -77740643 - L1PA13 LINE L1 -12 7589 1 13190 195 19 28 chrX 84859263 84860264 -77739666 - L1M1 LINE L1 -500 7242 6234 * 2233 109 0 0 chrX 84860264 84860567 -77739363 - AluSc SINE Alu -3 306 4 13190 195 19 28 chrX 84860567 84863985 -77735945 - L1M1 LINE L1 -1508 6234 2861 351 113 0 0 chrX 84863986 84864039 -77735891 + (TA)n Simple_repeat Simple_repeat 2 54 0 5031 83 6 3 chrX 84864041 84864729 -77735201 - L1PA7 LINE L1 -7 6147 5458 891 82 0 49 chrX 84864729 84864912 -77735018 + (TA)n Simple_repeat Simple_repeat 1 174 0 3081 110 7 0 chrX 84864990 84865418 -77734512 + MER57B LTR ERV1 1 431 -3 952 263 43 66 chrX 84865425 84865820 -77734110 - MER97c DNA MER1_type? -703 387 2 527 129 52 0 chrX 84865870 84865986 -77733944 + CT-rich Low_complexity Low_complexity 3 124 0 240 299 49 49 chrX 84866107 84866251 -77733679 - MIR SINE MIR -48 214 71 207 191 32 16 chrX 84866461 84866524 -77733406 + (TAA)n Simple_repeat Simple_repeat 3 66 0 420 307 33 13 chrX 84866798 84866948 -77732982 - MLT2E LTR ERVL -475 153 1 22 35 0 0 chrX 84867444 84867473 -77732457 + AT_rich Low_complexity Low_complexity 1 29 0 1038 191 100 20 chrX 84867922 84868173 -77731757 + MSTD-int LTR MaLR 1462 1732 -3 1195 250 68 45 chrX 84868176 84868556 -77731374 + MSTD LTR MaLR 1 389 -7 46 54 0 0 chrX 84869091 84869165 -77730765 + AT_rich Low_complexity Low_complexity 1 74 0 501 280 153 6 chrX 84870522 84870679 -77729251 + MER5A DNA MER1_type 9 188 -1 291 54 0 0 chrX 84871284 84871321 -77728609 + (CA)n Simple_repeat Simple_repeat 1 37 0 548 287 49 6 chrX 84872329 84872493 -77727437 + LTR50 LTR ERVL 11 181 -614 658 259 144 0 chrX 84872689 84872925 -77727005 + LTR50 LTR ERVL 515 784 -11 384 281 33 25 chrX 84873666 84873787 -77726143 + MLT1H LTR MaLR 412 533 -16 309 68 0 0 chrX 84873913 84873957 -77725973 + (TG)n Simple_repeat Simple_repeat 2 45 0 182 344 54 86 chrX 84874040 84874133 -77725797 + MIR SINE MIR 32 121 -87 10582 89 3 0 chrX 84874597 84876855 -77723075 + L1PA7 LINE L1 3876 6149 -5 532 252 22 0 chrX 84877678 84877813 -77722117 + HsTC2 DNA Tc2 6 143 -1755 982 284 71 11 chrX 84877832 84878198 -77721732 + HsTC2 DNA Tc2 1281 1668 -230 2210 174 5 47 chrX 84878198 84878628 -77721302 + L1PA15 LINE L1 5657 6068 -97 988 171 6 0 chrX 84878628 84878792 -77721138 + MSTB1 LTR MaLR 268 432 0 216 163 0 0 chrX 84878858 84878901 -77721029 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 289 0 0 chrX 84879132 84879177 -77720753 + L2 LINE L2 3261 3305 -8 23 0 0 0 chrX 84880154 84880177 -77719753 + AT_rich Low_complexity Low_complexity 1 23 0 1307 188 92 7 chrX 84880202 84880473 -77719457 + AluJo SINE Alu 1 294 -18 1204 329 63 58 chrX 84881309 84881609 -77718321 + MER45C DNA AcHobo 10 307 -646 3055 126 16 14 chrX 84881609 84882119 -77717811 + MER9 LTR ERVK 1 511 0 1204 329 63 58 chrX 84882119 84882439 -77717491 + MER45C DNA AcHobo 307 633 -320 270 214 0 36 chrX 84882435 84882491 -77717439 + MER45C DNA AcHobo 900 953 0 * 399 301 68 41 chrX 84882548 84882767 -77717163 + L3 LINE CR1 1351 1575 -2 46 68 0 0 chrX 84883007 84883095 -77716835 + AT_rich Low_complexity Low_complexity 1 88 0 2296 257 81 30 chrX 84884113 84884977 -77714953 - L1ME3A LINE L1 -8 6162 5255 1382 89 5 0 chrX 84886330 84886532 -77713398 + L1PA13 LINE L1 5961 6163 0 862 153 74 0 chrX 84886921 84887097 -77712833 - MER53 DNA DNA 0 189 1 382 292 107 38 chrX 84887159 84887358 -77712572 + MIR SINE MIR 3 208 -52 293 287 7 0 chrX 84887709 84887845 -77712085 + (TA)n Simple_repeat Simple_repeat 2 138 0 12619 200 98 24 chrX 84887935 84889388 -77710542 - L1MA5 LINE L1 -4 6611 5268 2027 154 28 30 chrX 84889388 84889751 -77710179 - THE1B LTR MaLR 0 364 3 12619 200 98 24 chrX 84889751 84890880 -77709050 - L1MA5 LINE L1 -1347 5268 4225 1693 166 7 11 chrX 84890880 84891189 -77708741 - AluSx SINE Alu 0 310 3 12619 200 98 24 chrX 84891189 84893454 -77706476 - L1MA5 LINE L1 -2390 4225 2130 183 42 0 0 chrX 84893454 84893478 -77706452 + (TTG)n Simple_repeat Simple_repeat 1 24 0 12619 200 98 24 chrX 84893478 84894681 -77705249 - L1MA5 LINE L1 -4485 2130 15 1957 163 145 40 chrX 84894700 84895196 -77704734 - LTR10A LTR ERV1 -61 548 1 427 246 8 8 chrX 84895426 84895544 -77704386 + HUERS-P1 LTR ERV1 3460 3577 -2686 27 87 0 0 chrX 84895544 84895613 -77704317 + AT_rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chrX 84895650 84895673 -77704257 + AT_rich Low_complexity Low_complexity 1 23 0 1139 132 26 0 chrX 84895698 84895887 -77704043 + L1PB1 LINE L1 5 198 -6665 * 13208 171 22 17 chrX 84895884 84901828 -77698102 + L1PB1 LINE L1 904 6865 -2 28 0 0 0 chrX 84901833 84901861 -77698069 + AT_rich Low_complexity Low_complexity 1 28 0 6777 211 76 50 chrX 84901873 84902417 -77697513 + HUERS-P1 LTR ERV1 3823 4351 -1980 1786 232 28 76 chrX 84902417 84902995 -77696935 + MLT2B3 LTR ERVL 2 551 -3 6777 211 76 50 chrX 84902995 84904287 -77695643 + HUERS-P1 LTR ERV1 4351 5734 -597 2281 102 0 10 chrX 84904287 84904600 -77695330 - AluSg SINE Alu 0 310 1 6777 211 76 50 chrX 84904600 84905046 -77694884 + HUERS-P1 LTR ERV1 5734 6167 -164 180 0 0 0 chrX 84905102 84905122 -77694808 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 554 126 0 32 chrX 84905124 84905219 -77694711 - AluSg/x SINE Alu -32 280 189 1039 218 5 0 chrX 84905219 84905416 -77694514 + LTR48B LTR ERV1 435 632 -12 1399 216 83 6 chrX 84905425 84905787 -77694143 - MER63C DNA MER1_type -532 398 9 270 0 0 0 chrX 84906134 84906164 -77693766 + (TG)n Simple_repeat Simple_repeat 2 31 0 600 166 283 0 chrX 84907318 84907463 -77692467 + MER5A DNA MER1_type 2 187 -2 2099 177 29 8 chrX 84907477 84907855 -77692075 - MER61D LTR ERV1 0 501 116 256 206 55 14 chrX 84907863 84907936 -77691994 - LTR28 LTR ERV1 -944 76 1 1823 128 45 7 chrX 84907936 84908225 -77691705 - LTR28-int LTR ERV1 0 5217 4918 2228 138 11 6 chrX 84908228 84908575 -77691355 - LTR28-int LTR ERV1 -1224 3993 3645 1611 147 4 0 chrX 84908581 84908826 -77691104 - AluSx SINE Alu -64 248 3 8757 160 36 26 chrX 84908826 84912780 -77687150 - MER61D-int LTR ERV1 -390 4827 400 2124 125 3 0 chrX 84912780 84913075 -77686855 - AluSg SINE Alu -14 296 1 8757 160 36 26 chrX 84913075 84913234 -77686696 - MER61D-int LTR ERV1 -4817 400 244 274 213 125 0 chrX 84913414 84913494 -77686436 - MER61D-int LTR ERV1 -6593 498 409 420 295 23 8 chrX 84913517 84913646 -77686284 - MER61D-int LTR ERV1 -5068 149 19 1868 162 220 5 chrX 84913663 84914045 -77685885 - MER61D LTR ERV1 0 501 38 306 174 58 0 chrX 84914012 84914081 -77685849 - LTR28 LTR ERV1 -947 73 1 * 206 301 24 24 chrX 84914825 84914908 -77685022 - MIR3 SINE MIR 0 208 126 24 32 0 0 chrX 84915912 84915943 -77683987 + AT_rich Low_complexity Low_complexity 1 31 0 786 276 0 0 chrX 84916464 84916638 -77683292 + MER41D LTR ERV1 384 557 0 1940 140 33 0 chrX 84916693 84916993 -77682937 - AluSx SINE Alu -2 310 1 514 304 25 21 chrX 84917803 84918013 -77681917 - MIR SINE MIR -52 210 3 3341 224 118 18 chrX 84919350 84919917 -77680013 + L1MC4 LINE L1 6460 6968 -1074 180 77 0 0 chrX 84919917 84919943 -77679987 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 3341 224 118 18 chrX 84919943 84920347 -77679583 + L1MC4 LINE L1 6968 7529 -513 1431 228 92 28 chrX 84920347 84920781 -77679149 - MLT1C LTR MaLR 0 467 6 526 195 8 0 chrX 84920785 84920903 -77679027 + L1MC4 LINE L1 7524 7642 -400 343 248 106 80 chrX 84920903 84921401 -77678529 + MER34B LTR ERV1 5 565 0 856 261 69 0 chrX 84921402 84921620 -77678310 + L1MC4 LINE L1 7635 7867 -175 37 0 0 0 chrX 84921649 84921686 -77678244 + AT_rich Low_complexity Low_complexity 1 37 0 3416 65 2 2 chrX 84921785 84922233 -77677697 + LTR7 LTR ERV1 1 448 -2 2288 106 7 0 chrX 84922560 84922861 -77677069 + AluSg SINE Alu 3 305 -5 21 36 0 0 chrX 84923500 84923528 -77676402 + AT_rich Low_complexity Low_complexity 1 28 0 519 268 128 8 chrX 84923617 84923852 -77676078 - L1M4 LINE L1 -920 5226 4964 3951 266 30 6 chrX 84923964 84925237 -77674693 - L1M4 LINE L1 -1471 4675 3373 844 155 14 0 chrX 84925251 84925399 -77674531 + MLT2D LTR ERVL 1 150 -264 274 275 148 7 chrX 84925402 84925544 -77674386 - L1MCa LINE L1 -4095 2331 2170 4879 239 22 19 chrX 84925609 84926375 -77673555 + L1P LINE L1 1432 2353 -3793 1784 133 56 0 chrX 84926375 84926660 -77673270 + AluSp SINE Alu 7 307 -6 4879 239 22 19 chrX 84926660 84927266 -77672664 + L1P LINE L1 2353 2956 -3190 5543 141 9 2 chrX 84927266 84928438 -77671492 + L1PA15 LINE L1 4975 6155 -10 236 261 0 0 chrX 84928488 84928553 -77671377 - L1M LINE L1 -781 5381 5317 24 0 0 0 chrX 84928553 84928577 -77671353 + AT_rich Low_complexity Low_complexity 1 24 0 1922 95 59 59 chrX 84929005 84929311 -77670619 - AluSg1 SINE Alu -3 306 1 3462 219 51 11 chrX 84929532 84930561 -77669369 - L1MB7 LINE L1 -19 6165 5107 275 248 32 16 chrX 84930926 84931051 -77668879 + (TA)n Simple_repeat Simple_repeat 1 127 0 931 221 6 0 chrX 84931248 84931420 -77668510 - MER2 DNA MER2_type -172 173 1 358 85 85 0 chrX 84931622 84931751 -77668179 + (TA)n Simple_repeat Simple_repeat 2 141 0 484 125 39 29 chrX 84931763 84932051 -77667879 + (TA)n Simple_repeat Simple_repeat 1 291 0 22 0 0 0 chrX 84938720 84938742 -77661188 + AT_rich Low_complexity Low_complexity 1 22 0 182 60 60 20 chrX 84938756 84938806 -77661124 + (TA)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chrX 84939237 84939258 -77660672 + AT_rich Low_complexity Low_complexity 1 21 0 230 300 82 18 chrX 84940351 84940461 -77659469 + MER117 DNA MER1_type 1 117 -80 265 262 287 8 chrX 84940679 84940801 -77659129 - MIR SINE MIR -7 255 100 973 137 5 63 chrX 84942424 84942587 -77657343 + MER34 LTR ERV1 11 163 -379 2563 116 6 3 chrX 84942587 84942950 -77656980 + THE1B LTR MaLR 1 364 0 973 137 5 63 chrX 84942950 84942976 -77656954 + MER34 LTR ERV1 163 189 -353 757 257 44 75 chrX 84943112 84943431 -77656499 + L2 LINE L2 3005 3313 0 2055 108 7 4 chrX 84943589 84943867 -77656063 + AluSx SINE Alu 3 281 -31 491 0 0 17 chrX 84943870 84943930 -77656000 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 22 70 0 0 chrX 84944135 84944178 -77655752 + AT_rich Low_complexity Low_complexity 1 43 0 308 288 97 44 chrX 84944372 84944598 -77655332 - L1MC/D LINE L1 -844 5515 5278 713 278 17 0 chrX 84944872 84945052 -77654878 + MER5A DNA MER1_type 2 184 -5 1931 200 19 17 chrX 84945171 84945623 -77654307 + MER89 LTR ERV1 6 559 0 21 0 0 0 chrX 84946441 84946462 -77653468 + AT_rich Low_complexity Low_complexity 1 21 0 2034 99 27 20 chrX 84946785 84947079 -77652851 - AluY SINE Alu -15 296 1 236 296 42 74 chrX 84947210 84947399 -77652531 + MLT1K LTR MaLR 403 585 -3 2809 3 0 0 chrX 84947439 84947740 -77652190 - AluYa5 SINE Alu -10 301 1 249 293 0 0 chrX 84948124 84948182 -77651748 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 280 161 36 0 chrX 84948492 84948548 -77651382 + Alu SINE Alu 245 302 0 28 0 0 0 chrX 84948581 84948609 -77651321 + AT_rich Low_complexity Low_complexity 1 28 0 1406 246 31 30 chrX 84948642 84949095 -77650835 + MER31B LTR ERV1 13 661 0 240 222 16 0 chrX 84949107 84949170 -77650760 - L1ME1 LINE L1 -86 6080 6017 25 31 0 0 chrX 84949183 84949215 -77650715 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chrX 84950622 84950655 -77649275 + AT_rich Low_complexity Low_complexity 1 33 0 2351 92 3 0 chrX 84951245 84951551 -77648379 - AluY SINE Alu -4 307 1 240 86 0 0 chrX 84952304 84952339 -77647591 + (TG)n Simple_repeat Simple_repeat 2 36 0 2137 93 3 7 chrX 84952409 84952700 -77647230 + AluSq SINE Alu 1 290 -23 189 325 48 36 chrX 84952812 84952895 -77647035 + L2 LINE L2 3189 3272 0 187 284 40 14 chrX 84952972 84953046 -77646884 - MIR3 SINE MIR -3 205 130 2198 181 31 5 chrX 84953047 84953468 -77646462 + MSTB1 LTR MaLR 1 432 0 210 358 92 17 chrX 84953881 84954054 -77645876 - L2 LINE L2 -427 2887 2702 452 250 56 19 chrX 84954118 84954278 -77645652 - HAL1 LINE L1 -131 2376 2211 521 316 6 6 chrX 84954327 84954485 -77645445 + LTR16B LTR ERVL 2 159 -305 304 305 12 0 chrX 84954489 84954571 -77645359 - Charlie1 DNA MER1_type -2678 83 1 227 125 0 0 chrX 84954651 84954683 -77645247 - Tigger1 DNA MER2_type 0 2418 2387 * 568 171 0 18 chrX 84954681 84954792 -77645138 + MSTB1 LTR MaLR 172 280 -152 * 12875 165 25 14 chrX 84954791 84955991 -77643939 - Tigger1 DNA MER2_type -30 2388 1149 2821 7 0 0 chrX 84955991 84956296 -77643634 - AluYa5 SINE Alu -6 305 1 12875 165 25 14 chrX 84956296 84957414 -77642516 - Tigger1 DNA MER2_type -1269 1149 45 1827 294 27 13 chrX 84957436 84958056 -77641874 + L1MA4A LINE L1 1 629 -6580 233 147 0 0 chrX 84958062 84958096 -77641834 + L1MA4A LINE L1 998 1031 -6178 1914 169 12 0 chrX 84958622 84958948 -77640982 + L1PB3 LINE L1 5825 6154 0 28 0 0 0 chrX 84958952 84958980 -77640950 + AT_rich Low_complexity Low_complexity 1 28 0 4910 188 64 6 chrX 84958998 84961021 -77638909 + L1MA4A LINE L1 5211 7350 -15 366 169 0 0 chrX 84961042 84961101 -77638829 - Tigger1 DNA MER2_type -2359 59 1 190 375 93 32 chrX 84961102 84961318 -77638612 - L2 LINE L2 -642 2672 2444 372 357 55 11 chrX 84962282 84962464 -77637466 + L3 LINE CR1 1379 1568 -9 527 366 4 9 chrX 84962514 84962746 -77637184 + L2 LINE L2 2160 2390 -924 326 315 16 8 chrX 84962835 84962962 -77636968 - MER91B DNA MER1_type -61 129 2 564 305 83 62 chrX 84962977 84963315 -77636615 + L2 LINE L2 2384 2728 -586 456 331 160 27 chrX 84963984 84964477 -77635453 + L2 LINE L2 2737 3300 -13 2175 92 34 0 chrX 84964788 84965080 -77634850 - AluY SINE Alu -9 302 1 245 300 55 27 chrX 84965081 84965191 -77634739 - L2 LINE L2 -22 3291 3179 1473 188 193 0 chrX 84965373 84965735 -77634195 + MER66A LTR ERV1 2 433 -45 22 0 0 0 chrX 84966352 84966374 -77633556 + AT_rich Low_complexity Low_complexity 1 22 0 1450 171 48 0 chrX 84966914 84967165 -77632765 - Tigger3(Golem) DNA MER2_type -2 3027 2765 1110 184 138 30 chrX 84967991 84968295 -77631635 - L1MC3 LINE L1 -21 7764 7428 2403 51 0 10 chrX 84968306 84968601 -77631329 - AluY SINE Alu -19 292 1 1379 253 121 13 chrX 84968602 84968998 -77630932 + MER31B LTR ERV1 7 445 -21 2407 182 22 53 chrX 84969001 84969507 -77630423 + MLT2B1 LTR ERVL 21 510 -10 4139 219 45 20 chrX 84969539 84970576 -77629354 - L1MC3 LINE L1 -352 7433 6371 2234 153 48 10 chrX 84970576 84970988 -77628942 + MSTA LTR MaLR 1 428 0 8773 184 22 7 chrX 84970988 84972615 -77627315 + MSTA-int LTR MaLR 1 1651 0 1945 152 53 6 chrX 84972618 84972960 -77626970 + MSTA LTR MaLR 4 361 -67 324 217 0 54 chrX 84972960 84973052 -77626878 - L1MC4 LINE L1 -1342 6700 6614 21 0 0 0 chrX 84973056 84973077 -77626853 + AT_rich Low_complexity Low_complexity 1 21 0 396 103 0 0 chrX 84973077 84973135 -77626795 + (CA)n Simple_repeat Simple_repeat 2 59 0 343 115 0 0 chrX 84973137 84973189 -77626741 + MSTA LTR MaLR 377 428 0 4167 227 39 37 chrX 84973212 84974041 -77625889 - L1MC3 LINE L1 -748 5398 4572 6618 57 0 7 chrX 84974041 84974880 -77625050 + L1PA6 LINE L1 5321 6153 -1 4167 227 39 37 chrX 84974880 84974907 -77625023 - L1MC3 LINE L1 -1574 4572 4547 1354 174 39 88 chrX 84974907 84975291 -77624639 - MLT1A1 LTR MaLR 0 365 1 4167 227 39 37 chrX 84975291 84976131 -77623799 - L1MC3 LINE L1 -1599 4547 4656 1937 157 0 0 chrX 84976131 84976431 -77623499 + AluSx SINE Alu 1 300 -12 4167 227 39 37 chrX 84976431 84976700 -77623230 - L1MC3 LINE L1 -1489 4657 4390 3036 150 85 5 chrX 84976768 84977354 -77622576 - L1PA16 LINE L1 -2 6164 5532 1912 206 28 65 chrX 84977355 84977886 -77622044 + MLT2B3 LTR ERVL 1 398 -55 8515 52 6 0 chrX 84977886 84979738 -77620192 - L1PA5 LINE L1 0 6154 4291 1803 29 0 0 chrX 84979748 84979957 -77619973 + L1P LINE L1 4037 4245 -1901 482 137 13 3 chrX 84979958 84980061 -77619869 + MLT2A2 LTR ERVL 386 453 0 3778 202 12 10 chrX 84980061 84981143 -77618787 - L1PA16 LINE L1 -631 5535 4448 186 71 0 0 chrX 84981143 84981171 -77618759 + (TG)n Simple_repeat Simple_repeat 1 28 0 3778 202 12 10 chrX 84981171 84981211 -77618719 - L1PA16 LINE L1 -1718 4448 4410 971 251 43 16 chrX 84981334 84981841 -77618089 - L1MC3 LINE L1 -2877 3269 2749 644 288 31 31 chrX 84981869 84982095 -77617835 + L1M4 LINE L1 24 249 -6293 9620 208 17 16 chrX 84982266 84982909 -77617021 + L1 LINE L1 17 658 -6907 2180 125 3 0 chrX 84982909 84983212 -77616718 + AluSq SINE Alu 1 304 -9 9620 208 17 16 chrX 84983212 84983894 -77616036 + L1 LINE L1 658 1347 -6218 189 0 0 0 chrX 84983894 84983915 -77616015 + (TGG)n Simple_repeat Simple_repeat 1 21 0 9620 208 17 16 chrX 84983915 84984501 -77615429 + L1 LINE L1 1347 1931 -5634 959 192 4 73 chrX 84984503 84984592 -77615338 + L1 LINE L1 5235 5329 -2236 2375 95 0 0 chrX 84984592 84984897 -77615033 + AluSg SINE Alu 1 305 -5 959 192 4 73 chrX 84984897 84985052 -77614878 + L1 LINE L1 5329 5462 -2103 243 143 0 0 chrX 84985053 84985088 -77614842 + MER61E LTR ERV1 531 565 -4 1643 271 54 34 chrX 84985101 84985898 -77614032 - L1ME3A LINE L1 -180 5990 5176 44 56 0 0 chrX 84987840 84987912 -77612018 + AT_rich Low_complexity Low_complexity 1 72 0 393 315 27 0 chrX 84988188 84988299 -77611631 - LTR16C LTR ERVL -314 177 64 259 208 208 9 chrX 84988409 84988515 -77611415 + MIR SINE MIR 122 248 -14 26 82 0 0 chrX 84988723 84988784 -77611146 + AT_rich Low_complexity Low_complexity 1 61 0 488 348 105 20 chrX 84989263 84989614 -77610316 + L2 LINE L2 2295 2675 -639 253 282 70 0 chrX 84989618 84989689 -77610241 + L2 LINE L2 3228 3303 -10 552 354 32 59 chrX 84989903 84990344 -77609586 + L2 LINE L2 2844 3272 0 1100 320 27 19 chrX 84990445 84990858 -77609072 + LTR16A LTR ERVL 30 445 -5 258 236 18 0 chrX 84991019 84991074 -77608856 + MER39 LTR ERV1 1 56 -651 * 845 261 71 47 chrX 84991069 84991433 -77608497 + MER39 LTR ERV1 335 707 0 248 283 74 30 chrX 84991920 84992054 -77607876 + LTR33A LTR ERVL 294 433 -88 191 167 24 0 chrX 84993229 84993271 -77606659 + CT-rich Low_complexity Low_complexity 2 44 0 4375 175 18 44 chrX 84993732 84994696 -77605234 - L1MA10 LINE L1 0 6334 5396 408 240 202 0 chrX 84994700 84994829 -77605101 + MER50 LTR ERV1 14 168 -566 1482 222 89 40 chrX 84994893 84995343 -77604587 + MER50 LTR ERV1 241 712 -22 3389 217 20 45 chrX 84995359 84996357 -77603573 - L1MA10 LINE L1 -745 5401 4443 1920 142 58 18 chrX 84996357 84996687 -77603243 - MER61A LTR ERV1 0 343 1 3389 217 20 45 chrX 84996687 84996698 -77603232 - L1MA10 LINE L1 -1703 4443 4433 24894 97 34 22 chrX 84996698 84999323 -77600607 - MER61A-int LTR ERV1 -11 5206 2518 5288 86 6 0 chrX 84999323 85000007 -77599923 - LTR12 LTR ERV1 0 688 1 24894 97 34 22 chrX 85000007 85001133 -77598797 - MER61A-int LTR ERV1 -2699 2518 1408 321 47 0 0 chrX 85001132 85001175 -77598755 - MER61A-int LTR ERV1 -3855 1362 1320 * 338 156 39 39 chrX 85001202 85001279 -77598651 - MER61A-int LTR ERV1 -4510 707 631 1242 213 25 24 chrX 85001349 85001792 -77598138 - MER61A-int LTR ERV1 -4719 498 1 1427 153 150 3 chrX 85001792 85002086 -77597844 - MER61A LTR ERV1 0 343 7 6699 222 69 33 chrX 85002093 85004289 -77595641 - L1MA10 LINE L1 -1700 4446 2172 24 0 0 0 chrX 85004300 85004324 -77595606 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 85004342 85004364 -77595566 + AT_rich Low_complexity Low_complexity 1 22 0 4853 185 2 9 chrX 85004364 85005274 -77594656 - L1PA16 LINE L1 -6 6160 5257 1908 242 14 2 chrX 85005625 85006042 -77593888 + MLT1C LTR MaLR 25 446 -21 1889 199 67 21 chrX 85006042 85006474 -77593456 - MER66A LTR ERV1 0 478 27 818 220 0 0 chrX 85006481 85006622 -77593308 - MER66A-int LTR ERV1 0 6676 6536 490 174 52 111 chrX 85006638 85006810 -77593120 + L1M4c LINE L1 1481 2022 -4361 249 370 8 16 chrX 85007539 85007666 -77592264 + L1PBb LINE L1 768 893 -5957 293 283 11 11 chrX 85008125 85008217 -77591713 + L1PBb LINE L1 1473 1564 -5285 * 10620 233 27 33 chrX 85008201 85013472 -77586458 + L1PA16 LINE L1 1335 6682 -187 33 97 0 0 chrX 85013503 85013606 -77586324 + AT_rich Low_complexity Low_complexity 1 103 0 351 148 148 9 chrX 85013611 85013726 -77586204 + L1MA7 LINE L1 6086 6216 -75 246 32 0 0 chrX 85013727 85013758 -77586172 + (TG)n Simple_repeat Simple_repeat 2 32 0 219 69 0 0 chrX 85013758 85013787 -77586143 + (CA)n Simple_repeat Simple_repeat 2 30 0 11259 167 29 3 chrX 85013788 85015610 -77584320 - L1PA12 LINE L1 -5712 1869 1 1414 321 66 99 chrX 85016188 85016929 -77583001 - L2 LINE L2 -2016 1298 534 1974 138 52 25 chrX 85016929 85017292 -77582638 + THE1C LTR MaLR 1 373 -2 229 62 31 0 chrX 85017292 85017324 -77582606 + THE1B LTR MaLR 332 364 0 1414 321 66 99 chrX 85017324 85017784 -77582146 - L2 LINE L2 -2778 536 106 36 70 0 0 chrX 85018183 85018254 -77581676 + AT_rich Low_complexity Low_complexity 1 71 0 4041 129 69 37 chrX 85018283 85019018 -77580912 - LTR1 LTR ERV1 0 785 27 600 303 65 58 chrX 85019128 85019528 -77580402 + L1ME1 LINE L1 2 404 -5641 1663 258 202 43 chrX 85019554 85020536 -77579394 + L1ME1 LINE L1 542 1366 -5198 1319 180 4 174 chrX 85020536 85021035 -77578895 - MLT2D LTR ERVL 0 414 1 1663 258 202 43 chrX 85021035 85021735 -77578195 + L1ME1 LINE L1 1366 1953 -4611 2335 107 3 0 chrX 85021735 85022044 -77577886 + AluSp SINE Alu 1 310 -3 1663 258 202 43 chrX 85022044 85022131 -77577799 + L1ME1 LINE L1 1953 2608 -3956 835 118 0 15 chrX 85022128 85022263 -77577667 - L1PA16 LINE L1 -263 5903 5771 * 785 140 17 22 chrX 85022250 85022477 -77577453 + L1PA16 LINE L1 5905 6165 -1 * 390 344 32 26 chrX 85022497 85022905 -77577025 + L1ME3 LINE L1 5482 5888 -274 * 42523 36 22 2 chrX 85022893 85028921 -77571009 + L1PA3 LINE L1 2 6155 0 1430 266 40 37 chrX 85029152 85029852 -77570078 + L1ME1 LINE L1 2618 3319 -3245 881 224 77 35 chrX 85029854 85030120 -77569810 + L1ME1 LINE L1 4120 4404 -2160 1984 219 41 5 chrX 85030120 85030531 -77569399 - MSTB LTR MaLR 0 426 1 881 224 77 35 chrX 85030531 85030604 -77569326 + L1ME1 LINE L1 4404 4473 -2091 * 3045 213 57 8 chrX 85030602 85031395 -77568535 + L1MC3 LINE L1 6945 7776 -9 1135 275 24 36 chrX 85031737 85032235 -77567695 - L1M4 LINE L1 -743 5403 4912 2317 267 35 34 chrX 85032260 85033444 -77566486 + L1ME1 LINE L1 5388 6569 -15 4054 151 26 1 chrX 85033597 85034293 -77565637 - L1MA1 LINE L1 -4 6298 5586 614 112 11 0 chrX 85034293 85034382 -77565548 - L1M1 LINE L1 -606 5696 5607 * 1803 205 14 0 chrX 85034381 85034751 -77565179 - L1M1 LINE L1 -1083 5063 4689 1563 211 8 51 chrX 85034851 85035206 -77564724 + MLT1A1 LTR MaLR 1 340 -25 6599 48 1 5 chrX 85035209 85036027 -77563903 - L1PA7 LINE L1 -13 6141 5327 2637 303 36 20 chrX 85036046 85036951 -77562979 - L1M4 LINE L1 -5621 921 2 3516 256 56 64 chrX 85037024 85039017 -77560913 - L1MDb LINE L1 -1525 4881 2904 4165 208 62 21 chrX 85039130 85040208 -77559722 - L1MC3 LINE L1 -9 7776 6655 1683 199 21 3 chrX 85040209 85040540 -77559390 + MLT1A1 LTR MaLR 1 337 -28 198 71 0 0 chrX 85040571 85040599 -77559331 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1712 175 3 0 chrX 85040602 85040887 -77559043 - AluJb SINE Alu -26 286 1 2539 228 58 8 chrX 85040891 85041550 -77558380 - L1 LINE L1 -1146 5000 4309 478 250 68 0 chrX 85041540 85041732 -77558198 - L1M4 LINE L1 -807 5339 5135 * 859 260 49 6 chrX 85041711 85042057 -77557873 - L1MDb LINE L1 -3937 2469 2109 23 68 0 0 chrX 85042115 85042159 -77557771 + AT_rich Low_complexity Low_complexity 1 44 0 1055 134 23 18 chrX 85042163 85042334 -77557596 - AluSg/x SINE Alu -12 300 129 2760 243 46 64 chrX 85042334 85043823 -77556107 - L1MDb LINE L1 -4458 1948 468 370 204 11 23 chrX 85044939 85045027 -77554903 + MER103 DNA DNA 6 92 -74 470 282 98 74 chrX 85045400 85045871 -77554059 + L1ME3A LINE L1 4364 4845 -1301 293 286 41 27 chrX 85045879 85046026 -77553904 + L1ME3A LINE L1 4904 5052 -1094 400 228 40 106 chrX 85046073 85046401 -77553529 + L1ME3A LINE L1 5185 5491 -680 1908 184 2 58 chrX 85046401 85046814 -77553116 - MLT1B LTR MaLR 0 390 1 400 228 40 106 chrX 85046814 85046832 -77553098 + L1ME3A LINE L1 5491 5509 -662 414 305 92 8 chrX 85046934 85047256 -77552674 + L1ME3A LINE L1 5525 5883 -287 3069 171 53 23 chrX 85047282 85047983 -77551947 - L1M1 LINE L1 -4096 3469 2748 6637 217 22 15 chrX 85048051 85049663 -77550267 - L1 LINE L1 -1186 4960 3337 267 105 53 0 chrX 85049663 85049720 -77550210 + (TA)n Simple_repeat Simple_repeat 2 61 0 303 241 96 0 chrX 85049721 85049804 -77550126 + L1MC4 LINE L1 6613 6703 -1339 331 208 0 99 chrX 85049833 85049934 -77549996 + L1MC4 LINE L1 6613 6703 -1339 977 134 6 0 chrX 85049964 85050136 -77549794 + (TA)n Simple_repeat Simple_repeat 2 174 0 198 0 0 0 chrX 85050139 85050161 -77549769 + (TG)n Simple_repeat Simple_repeat 2 23 0 1786 149 0 21 chrX 85050180 85050469 -77549461 - AluSx SINE Alu -29 283 1 2797 239 38 16 chrX 85050469 85051315 -77548615 - L1 LINE L1 -2801 3345 2482 12022 185 29 46 chrX 85051349 85051969 -77547961 + L1P LINE L1 2392 3021 -3125 1886 137 7 13 chrX 85051969 85052269 -77547661 + AluSx SINE Alu 6 303 -9 12022 185 29 46 chrX 85052269 85054561 -77545369 + L1P LINE L1 3021 5253 -893 6992 53 4 10 chrX 85054561 85055465 -77544465 + L1PA7 LINE L1 5254 6152 -2 2926 275 32 21 chrX 85055478 85055945 -77543985 - L1PBb LINE L1 -3654 2549 2089 1716 253 41 5 chrX 85055945 85056356 -77543574 + MSTB LTR MaLR 1 426 0 2926 275 32 21 chrX 85056356 85057100 -77542830 - L1PBb LINE L1 -4114 2089 1318 4661 107 44 33 chrX 85057124 85058230 -77541700 + MER11A LTR ERVK 1 1071 0 1216 290 45 13 chrX 85058251 85059209 -77540721 - L1PBb LINE L1 -4913 1290 347 373 404 17 10 chrX 85059327 85059629 -77540301 - L1PBb LINE L1 -5848 356 53 333 314 67 43 chrX 85059653 85059863 -77540067 - L1PBa LINE L1 -5220 1643 1429 281 448 15 8 chrX 85059918 85060311 -77539619 - L1PBa LINE L1 -6397 466 71 3992 133 15 124 chrX 85060311 85061866 -77538064 - pTR5 LTR ERV1 0 2606 1524 22 0 0 0 chrX 85062106 85062128 -77537802 + AT_rich Low_complexity Low_complexity 1 22 0 482 210 158 55 chrX 85062860 85063132 -77536798 - L1ME1 LINE L1 -8 6158 5859 26 30 0 0 chrX 85063154 85063187 -77536743 + AT_rich Low_complexity Low_complexity 1 33 0 33 66 0 0 chrX 85064134 85064195 -77535735 + AT_rich Low_complexity Low_complexity 1 61 0 29 0 0 0 chrX 85064408 85064437 -77535493 + AT_rich Low_complexity Low_complexity 1 29 0 2281 138 58 35 chrX 85064592 85065111 -77534819 - MLT2A2 LTR ERVL 0 554 2 8293 214 28 21 chrX 85065635 85067851 -77532079 + L1M3 LINE L1 3289 5533 -647 486 227 10 0 chrX 85067822 85067919 -77532011 + L1MCa LINE L1 407 504 -5922 * 1929 240 79 15 chrX 85067920 85067961 -77531969 - MLT2B3 LTR ERVL 0 554 517 194 0 39 0 chrX 85067961 85067987 -77531943 + (GA)n Simple_repeat Simple_repeat 2 28 0 1929 240 79 15 chrX 85067987 85068465 -77531465 - MLT2B3 LTR ERVL -37 517 2 7776 222 52 45 chrX 85068466 85071399 -77528531 - ERVL LTR ERVL -7 5757 2813 362 176 47 0 chrX 85071399 85071547 -77528383 + (TA)n Simple_repeat Simple_repeat 1 155 0 28 0 0 0 chrX 85071919 85071947 -77527983 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 85072649 85072672 -77527258 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 85072693 85072728 -77527202 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chrX 85072928 85072965 -77526965 + AT_rich Low_complexity Low_complexity 1 37 0 457 312 81 5 chrX 85072981 85073167 -77526763 - MIR SINE MIR -14 248 49 557 358 97 12 chrX 85073235 85073803 -77526127 - L2 LINE L2 -60 3253 2636 387 296 166 21 chrX 85073772 85074056 -77525874 - L2 LINE L2 -857 2457 2133 * 243 0 0 0 chrX 85074310 85074337 -77525593 + (TG)n Simple_repeat Simple_repeat 2 28 0 195 377 31 25 chrX 85074374 85074533 -77525397 - L2 LINE L2 -1646 1668 1509 223 146 36 0 chrX 85074701 85074756 -77525174 + (TA)n Simple_repeat Simple_repeat 1 57 0 310 129 14 29 chrX 85074816 85074886 -77525044 - L1PA16 LINE L1 0 7604 7536 12216 244 32 22 chrX 85074887 85078552 -77521378 - L1PA16 LINE L1 -105 7499 3753 2500 146 26 5 chrX 85078552 85078971 -77520959 + MSTA LTR MaLR 1 428 0 12216 244 32 22 chrX 85078971 85080525 -77519405 - L1PA16 LINE L1 -3851 3753 2217 276 284 0 0 chrX 85080792 85080873 -77519057 - L1PA16 LINE L1 -5398 2183 2103 708 346 59 41 chrX 85080990 85081579 -77518351 - L1PA16 LINE L1 -6187 1387 788 411 325 102 35 chrX 85081605 85081919 -77518011 - L2 LINE L2 -1812 1502 1168 534 354 113 44 chrX 85081986 85082489 -77517441 - L2 LINE L2 -2509 805 268 231 133 0 0 chrX 85082519 85082564 -77517366 + (TG)n Simple_repeat Simple_repeat 1 45 0 273 317 10 48 chrX 85082816 85082920 -77517010 + MER5A DNA MER1_type 90 189 0 267 161 0 0 chrX 85082957 85083013 -77516917 + (TA)n Simple_repeat Simple_repeat 1 56 0 27 0 0 0 chrX 85083106 85083133 -77516797 + AT_rich Low_complexity Low_complexity 1 27 0 454 301 57 20 chrX 85083453 85083699 -77516231 - MIR SINE MIR -3 259 5 30 27 0 0 chrX 85084391 85084428 -77515502 + AT_rich Low_complexity Low_complexity 1 37 0 1485 217 0 11 chrX 85084960 85085258 -77514672 - AluJo SINE Alu 0 307 13 634 239 89 72 chrX 85086310 85086753 -77513177 - L1MC4 LINE L1 -130 7912 7357 495 252 7 13 chrX 85087079 85087230 -77512700 + L1PBa LINE L1 43 192 -6671 24 53 0 0 chrX 85087771 85087809 -77512121 + AT_rich Low_complexity Low_complexity 1 38 0 3680 184 35 9 chrX 85087964 85088713 -77511217 - L1MB1 LINE L1 0 5992 5225 4475 225 43 20 chrX 85089185 85089903 -77510027 - L1MB1 LINE L1 -1188 4782 4082 2041 104 4 4 chrX 85089903 85090181 -77509749 + AluSc SINE Alu 1 298 0 181 0 0 0 chrX 85090181 85090201 -77509729 + (CAAA)n Simple_repeat Simple_repeat 1 160 0 4475 225 43 20 chrX 85090201 85090912 -77509018 - L1MB1 LINE L1 -1888 4082 3321 962 326 22 62 chrX 85091008 85091511 -77508419 - L1MB1 LINE L1 -5406 485 3 3117 182 28 45 chrX 85091717 85092420 -77507510 - LTR8 LTR ERV1 0 691 1 29 78 0 0 chrX 85093246 85093310 -77506620 + AT_rich Low_complexity Low_complexity 1 64 0 337 263 178 42 chrX 85093600 85093782 -77506148 - MLT1J LTR MaLR -89 526 238 437 357 45 20 chrX 85094099 85094343 -77505587 - MIR SINE MIR -12 250 1 1668 309 30 18 chrX 85094528 85094630 -77505300 - MLT1H1 LTR MaLR 0 555 456 1495 247 58 36 chrX 85094630 85095161 -77504769 - MER67A LTR ERV1 0 543 1 1668 309 30 18 chrX 85095161 85095601 -77504329 - MLT1H1 LTR MaLR -99 456 7 250 191 12 36 chrX 85095934 85096018 -77503912 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 180 0 0 0 chrX 85097484 85097504 -77502426 + (T)n Simple_repeat Simple_repeat 1 20 0 1471 343 70 29 chrX 85098274 85099222 -77500708 + ERVL LTR ERVL 3645 4631 -1133 913 333 46 27 chrX 85099256 85099902 -77500028 + ERVL LTR ERVL 4681 5333 -321 1676 309 30 10 chrX 85100087 85100595 -77499335 + LTR33 LTR ERVL 3 520 -1 12432 62 10 0 chrX 85100910 85102911 -77497019 + L1P2 LINE L1 3725 5741 -413 360 0 0 0 chrX 85103260 85103300 -77496630 + (CA)n Simple_repeat Simple_repeat 1 40 0 240 86 0 0 chrX 85104752 85104787 -77495143 + (TG)n Simple_repeat Simple_repeat 2 36 0 234 0 0 0 chrX 85105413 85105439 -77494491 + (A)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chrX 85106067 85106088 -77493842 + AT_rich Low_complexity Low_complexity 1 21 0 411 280 8 8 chrX 85107535 85107660 -77492270 - L1ME1 LINE L1 -21 6145 6021 241 235 0 0 chrX 85107659 85107712 -77492218 + L1M3 LINE L1 5720 5769 -399 * 274 390 43 0 chrX 85107762 85107903 -77492027 + L2 LINE L2 1061 1207 -2107 21 36 0 0 chrX 85108857 85108885 -77491045 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 85109287 85109310 -77490620 + AT_rich Low_complexity Low_complexity 1 23 0 1848 119 0 0 chrX 85110581 85110841 -77489089 - MER4D LTR ERV1 -2 870 611 1488 183 11 15 chrX 85110841 85111115 -77488815 - AluJb SINE Alu -39 273 1 408 308 21 7 chrX 85111130 85111273 -77488657 - L1ME LINE L1 -4598 1663 1519 575 249 75 124 chrX 85111291 85111813 -77488117 - L1ME LINE L1 -4670 1410 822 313 314 114 0 chrX 85111837 85111977 -77487953 - L1ME LINE L1 -5379 691 536 1005 331 46 36 chrX 85111982 85112135 -77487795 - L1ME LINE L1 -5580 490 340 2020 79 86 0 chrX 85112135 85112413 -77487517 - AluSq SINE Alu -11 302 1 1005 331 46 36 chrX 85112413 85112733 -77487197 - L1ME LINE L1 -5730 340 12 232 284 78 78 chrX 85112887 85112989 -77486941 + L3 LINE CR1 1329 1430 -147 185 265 20 0 chrX 85113010 85113059 -77486871 - L2 LINE L2 -6 3266 3217 303 245 19 38 chrX 85113569 85113675 -77486255 - L1MCa LINE L1 -4362 2064 1961 5857 175 8 2 chrX 85114541 85116387 -77483543 - L1PB1 LINE L1 0 6867 5012 2676 199 42 0 chrX 85116385 85116907 -77483023 - L1PB1 LINE L1 -6188 675 132 * 21 36 0 0 chrX 85116930 85116958 -77482972 + AT_rich Low_complexity Low_complexity 1 28 0 1829 148 0 38 chrX 85117021 85117339 -77482591 - AluJo SINE Alu -6 306 1 836 189 13 6 chrX 85117657 85117816 -77482114 + MLT1E2 LTR MaLR 1 160 -466 1108 257 16 26 chrX 85117819 85118126 -77481804 + MLT1E2 LTR MaLR 319 622 -4 21 36 0 0 chrX 85120071 85120099 -77479831 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrX 85120278 85120320 -77479610 + AT_rich Low_complexity Low_complexity 1 42 0 199 295 26 39 chrX 85120615 85120693 -77479237 + L3b LINE CR1 1434 1510 -73 783 292 68 14 chrX 85121910 85122191 -77477739 - L2 LINE L2 -22 3291 2996 208 206 65 122 chrX 85122484 85122582 -77477348 - MIR3 SINE MIR -15 193 100 330 26 0 0 chrX 85122582 85122621 -77477309 + (TG)n Simple_repeat Simple_repeat 1 39 0 681 100 0 0 chrX 85122934 85123034 -77476896 - L1MA1 LINE L1 0 6302 6203 1904 229 51 70 chrX 85123167 85123795 -77476135 + MLT1E2 LTR MaLR 11 626 0 15116 155 28 45 chrX 85124398 85131231 -77468699 - L1PB1 LINE L1 -5 6862 127 193 392 65 30 chrX 85131299 85131531 -77468399 - L2 LINE L2 -582 2732 2493 38 39 0 0 chrX 85131642 85131694 -77468236 + AT_rich Low_complexity Low_complexity 1 52 0 307 298 33 8 chrX 85132405 85132526 -77467404 + L2 LINE L2 2934 3057 -215 199 139 28 0 chrX 85133170 85133206 -77466724 - L2 LINE L2 -5 3308 3272 4096 216 53 27 chrX 85135880 85136373 -77463557 - L1MC2 LINE L1 -2 6342 5863 2399 68 13 0 chrX 85136373 85136682 -77463248 - AluSp SINE Alu 0 313 1 4096 216 53 27 chrX 85136682 85137886 -77462044 - L1MC2 LINE L1 -481 5863 4600 24 0 0 0 chrX 85137912 85137936 -77461994 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chrX 85138404 85138429 -77461501 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chrX 85138517 85138541 -77461389 + (TG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrX 85139079 85139110 -77460820 + AT_rich Low_complexity Low_complexity 1 31 0 399 119 0 15 chrX 85139743 85139810 -77460120 - AluS SINE Alu -11 290 225 935 171 7 0 chrX 85139810 85139962 -77459968 - AluSq SINE Alu -160 153 1 2550 58 0 7 chrX 85140761 85141071 -77458859 - AluY SINE Alu -3 308 1 1018 284 44 19 chrX 85141109 85141426 -77458504 + L1MCc LINE L1 892 1216 -5207 288 213 40 13 chrX 85141488 85141563 -77458367 + Zaphod DNA AcHobo 3854 3930 -101 304 292 87 39 chrX 85141798 85142104 -77457826 - L1P4 LINE L1 -483 5683 5361 243 266 63 25 chrX 85142110 85142189 -77457741 - L2 LINE L2 -1 3312 3231 1092 267 48 23 chrX 85143722 85144163 -77455767 - MLT1H LTR MaLR 0 549 75 3690 220 22 14 chrX 85144174 85145248 -77454682 + L1P4 LINE L1 4398 5476 -689 635 124 10 0 chrX 85145288 85145385 -77454545 + AluY SINE Alu 95 192 -119 2550 125 13 35 chrX 85145386 85145815 -77454115 - L1PA16 LINE L1 -261 5905 5485 2292 98 7 0 chrX 85145815 85146120 -77453810 - AluSp SINE Alu -6 307 1 2550 125 13 35 chrX 85146120 85146146 -77453784 - L1PA16 LINE L1 -681 5485 5460 1510 97 0 0 chrX 85146146 85146360 -77453570 + L1PA14 LINE L1 5942 6157 -4 1027 299 31 5 chrX 85146488 85146912 -77453018 - L1M4 LINE L1 -2448 3698 3264 192 40 0 0 chrX 85146969 85146994 -77452936 + (ATG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chrX 85147048 85147071 -77452859 + AT_rich Low_complexity Low_complexity 1 23 0 248 288 0 15 chrX 85147107 85147173 -77452757 - MIR SINE MIR -165 97 33 881 186 48 52 chrX 85147218 85147470 -77452460 + pTR5 LTR ERV1 743 993 -1445 3945 112 72 35 chrX 85147538 85148200 -77451730 + LTR12 LTR ERV1 1 687 -1 1610 159 11 11 chrX 85148280 85148551 -77451379 + AluSx SINE Alu 1 271 -41 237 108 31 31 chrX 85148553 85148618 -77451312 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 329 313 66 28 chrX 85149122 85149333 -77450597 - L1ME4a LINE L1 -205 5916 5698 315 0 0 0 chrX 85149335 85149370 -77450560 + (TG)n Simple_repeat Simple_repeat 2 36 0 1630 179 13 13 chrX 85149574 85149886 -77450044 - AluJo SINE Alu 0 312 1 31 26 0 0 chrX 85149945 85149983 -77449947 + AT_rich Low_complexity Low_complexity 1 38 0 1984 179 54 81 chrX 85150340 85150898 -77449032 - MLT2B3 LTR ERVL -11 543 1 283 245 106 21 chrX 85151330 85151424 -77448506 + MIR SINE MIR 124 225 -37 321 201 43 30 chrX 85152727 85152891 -77447039 + (TA)n Simple_repeat Simple_repeat 2 167 0 210 208 0 0 chrX 85152897 85152945 -77446985 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 1463 161 36 25 chrX 85153056 85153336 -77446594 + AluJo SINE Alu 12 294 -18 1007 197 16 42 chrX 85153518 85153740 -77446190 + L1MDa LINE L1 1106 1319 -5221 1874 218 5 20 chrX 85153740 85154140 -77445790 + MSTD LTR MaLR 3 396 0 1007 197 16 42 chrX 85154140 85154226 -77445704 + L1MDa LINE L1 1319 1406 -5134 315 202 36 24 chrX 85154246 85154330 -77445600 + MER45C DNA AcHobo 528 612 -341 1072 251 31 0 chrX 85154545 85154968 -77444962 - L1M4 LINE L1 -2961 3185 2750 719 256 86 0 chrX 85154991 85155225 -77444705 + L1MDa LINE L1 2934 3187 -3353 213 175 0 0 chrX 85155314 85155354 -77444576 + (TA)n Simple_repeat Simple_repeat 1 40 0 486 170 98 45 chrX 85155356 85155468 -77444462 + Tigger7 DNA MER2_type 2374 2491 0 673 209 12 127 chrX 85155468 85155655 -77444275 - L1M4 LINE L1 -3712 2434 2302 424 171 0 0 chrX 85155655 85155743 -77444187 - L1MA4 LINE L1 0 6300 6213 673 209 12 127 chrX 85155743 85155895 -77444035 - L1M4 LINE L1 -3844 2302 2134 800 266 40 0 chrX 85156139 85156316 -77443614 + L1PA13 LINE L1 1 184 -6603 2246 232 13 13 chrX 85156328 85156879 -77443051 + L1PA13 LINE L1 1728 2278 -4509 309 201 4 37 chrX 85156918 85157013 -77442917 - L1MCa LINE L1 -1339 6983 2006 300 108 27 122 chrX 85156989 85157063 -77442867 - L1MCa LINE L1 -4354 2072 2006 * 234 144 33 67 chrX 85157067 85157247 -77442683 + (TA)n Simple_repeat Simple_repeat 2 175 0 208 231 58 10 chrX 85157250 85157354 -77442576 + (TTATA)n Simple_repeat Simple_repeat 5 113 0 291 154 66 0 chrX 85157369 85157505 -77442425 + (CATAT)n Simple_repeat Simple_repeat 1 145 0 223 135 0 39 chrX 85157510 85157562 -77442368 + (TA)n Simple_repeat Simple_repeat 2 51 0 326 257 0 0 chrX 85157562 85157636 -77442294 + L1PA13 LINE L1 2376 2449 -4348 5436 143 6 2 chrX 85157636 85159182 -77440748 + L1PA15 LINE L1 4593 6146 -19 233 291 50 25 chrX 85159261 85159460 -77440470 - L1 LINE L1 -1559 4587 4384 24 0 0 0 chrX 85159471 85159495 -77440435 + AT_rich Low_complexity Low_complexity 1 24 0 5220 205 15 18 chrX 85159583 85161727 -77438203 - L1PA15 LINE L1 -16 6149 4020 * 7630 205 16 72 chrX 85161721 85162516 -77437414 - L1P LINE L1 -972 5174 4336 1824 151 16 13 chrX 85162516 85162820 -77437110 - AluJb SINE Alu -3 309 5 7630 205 16 72 chrX 85162820 85163027 -77436903 - L1P LINE L1 -1810 4336 4119 3915 105 30 11 chrX 85163027 85163655 -77436275 + MER51C LTR ERV1 1 640 0 7630 205 16 72 chrX 85163655 85164915 -77435015 - L1P LINE L1 -2027 4119 3039 2131 292 74 31 chrX 85164920 85166298 -77433632 - L1M4b LINE L1 -5331 1528 12 2005 118 20 3 chrX 85166694 85166998 -77432932 + AluSg SINE Alu 1 309 -1 407 202 26 44 chrX 85168074 85168188 -77431742 + Charlie4 DNA MER1_type 1835 1946 -15 400 335 24 52 chrX 85168200 85168448 -77431482 + LTR33 LTR ERVL 260 500 -21 891 320 74 18 chrX 85169718 85170108 -77429822 - L2 LINE L2 -447 2867 2456 207 204 0 0 chrX 85170196 85170240 -77429690 + GA-rich Low_complexity Low_complexity 3 46 0 514 179 28 9 chrX 85170403 85170509 -77429421 - L1MA1 LINE L1 -4 6298 6191 822 253 5 5 chrX 85170708 85170906 -77429024 - L2 LINE L2 -853 2461 2264 208 267 0 0 chrX 85171329 85171374 -77428556 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 2903 119 23 6 chrX 85173057 85173537 -77426393 - L1MA3 LINE L1 0 6305 5818 265 167 50 0 chrX 85173972 85174032 -77425898 - MLT2B3 LTR ERVL 0 520 458 273 57 0 0 chrX 85174037 85174072 -77425858 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 2150 243 35 14 chrX 85174074 85174602 -77425328 - MLT2B3 LTR ERVL -19 507 1 1018 99 25 19 chrX 85174852 85175013 -77424917 - L1MA3 LINE L1 0 6305 6144 225 94 0 0 chrX 85175014 85175046 -77424884 + L1MA3 LINE L1 5929 5960 -345 180 0 0 0 chrX 85175093 85175113 -77424817 + (A)n Simple_repeat Simple_repeat 1 20 0 1507 199 42 52 chrX 85175235 85175641 -77424289 - MER39 LTR ERV1 0 707 306 1429 167 51 42 chrX 85175842 85176062 -77423868 - MER44D DNA MER2_type -1883 608 391 213 39 0 0 chrX 85176062 85176088 -77423842 + (TC)n Simple_repeat Simple_repeat 1 26 0 1429 167 51 42 chrX 85176088 85176202 -77423728 - MER44D DNA MER2_type -2100 391 1 541 176 11 0 chrX 85176798 85176889 -77423041 + MLT1D LTR MaLR 1 92 -413 265 294 55 9 chrX 85177049 85177158 -77422772 - L1ME LINE L1 -477 5644 5531 405 0 0 0 chrX 85177272 85177317 -77422613 + (TG)n Simple_repeat Simple_repeat 2 46 0 677 243 87 0 chrX 85177382 85177555 -77422375 + MER20 DNA MER1_type 31 218 -1 232 140 18 18 chrX 85177935 85177992 -77421938 + (TG)n Simple_repeat Simple_repeat 2 58 0 532 297 25 29 chrX 85178175 85178427 -77421503 - L1ME3A LINE L1 -290 5880 5669 329 259 133 7 chrX 85178443 85178578 -77421352 - Charlie2a DNA MER1_type 0 2862 2711 * 519 236 63 23 chrX 85178574 85178748 -77421182 - Charlie2a DNA MER1_type -1200 1662 1482 399 325 81 10 chrX 85178960 85179157 -77420773 - Charlie2a DNA MER1_type -2475 307 97 610 278 99 57 chrX 85179419 85179822 -77420108 - LTR38 LTR ERV1 0 556 137 308 335 94 32 chrX 85179881 85180601 -77419329 - L1ME LINE L1 -749 5397 4633 390 307 65 22 chrX 85180667 85181081 -77418849 - L1ME LINE L1 -3158 2988 2557 404 236 11 0 chrX 85181136 85181225 -77418705 - Tigger5 DNA MER2_type 0 2323 2234 338 247 0 0 chrX 85181278 85181351 -77418579 - Tigger5 DNA MER2_type 0 2323 2251 243 200 18 18 chrX 85181320 85181375 -77418555 - Tigger5 DNA MER2_type -2268 55 1 * 241 269 0 13 chrX 85181375 85181453 -77418477 + (TA)n Simple_repeat Simple_repeat 1 77 0 22 56 0 0 chrX 85181532 85181568 -77418362 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chrX 85181985 85182023 -77417907 + AT_rich Low_complexity Low_complexity 1 38 0 9304 206 15 17 chrX 85182372 85183635 -77416295 + L1P LINE L1 2304 3563 -2583 255 103 0 0 chrX 85183635 85183674 -77416256 + (TG)n Simple_repeat Simple_repeat 2 40 0 9304 206 15 17 chrX 85183674 85184464 -77415466 + L1P LINE L1 3563 4353 -1793 488 302 82 40 chrX 85184632 85185204 -77414726 - L1ME3A LINE L1 -299 5871 5276 268 250 125 25 chrX 85185241 85185441 -77414489 - L1ME3A LINE L1 -913 5233 5014 334 77 0 0 chrX 85185456 85185508 -77414422 - AluSp/q SINE Alu -5 298 247 2294 107 0 0 chrX 85185772 85186081 -77413849 - AluSx SINE Alu -3 309 1 786 224 72 57 chrX 85186691 85187049 -77412881 + MLT2B2 LTR ERVL 1 453 -62 533 12 62 0 chrX 85187049 85187130 -77412800 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 786 224 72 57 chrX 85187130 85187194 -77412736 + MLT2B2 LTR ERVL 453 515 0 315 258 88 57 chrX 85187232 85187426 -77412504 - L1ME3A LINE L1 -1664 4482 4283 342 358 95 15 chrX 85187724 85187998 -77411932 - L1ME3A LINE L1 -1834 4312 4017 276 330 88 15 chrX 85188121 85188463 -77411467 - L1ME3A LINE L1 -2227 3919 3553 443 236 191 24 chrX 85188591 85188837 -77411093 - L1ME3A LINE L1 -2664 3482 3196 537 255 91 87 chrX 85188849 85189276 -77410654 + LTR68 LTR ERV1 1 429 -311 377 221 108 54 chrX 85189426 85189630 -77410300 - L1ME3A LINE L1 -2961 3185 2971 1272 257 34 47 chrX 85189934 85190146 -77409784 - L1MD2 LINE L1 -2 6357 6144 1896 160 3 6 chrX 85190146 85190458 -77409472 - AluSx SINE Alu -1 311 1 1272 257 34 47 chrX 85190458 85190688 -77409242 - L1MD2 LINE L1 -215 6144 5921 552 106 12 0 chrX 85190770 85190855 -77409075 - L1P4 LINE L1 -523 5638 5553 514 136 15 0 chrX 85190865 85190997 -77408933 + (TA)n Simple_repeat Simple_repeat 2 135 0 2992 129 12 12 chrX 85190997 85191499 -77408431 + L1PA14 LINE L1 5658 6159 -2 642 254 229 43 chrX 85191768 85192048 -77407882 + L1M4b LINE L1 91 422 -6437 527 265 73 0 chrX 85192059 85192195 -77407735 + L1M4b LINE L1 1130 1275 -5584 2222 270 43 14 chrX 85192227 85193193 -77406737 - L1MDb LINE L1 -2935 3471 2477 232 192 39 0 chrX 85193173 85193225 -77406705 + L1MA9 LINE L1 6254 6307 -5 * 1203 257 49 46 chrX 85193233 85194103 -77405827 - L1MDb LINE L1 -3900 2508 1543 2306 146 50 13 chrX 85194126 85194591 -77405339 - L1MA3 LINE L1 0 6305 5824 212 158 0 0 chrX 85194633 85194671 -77405259 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6327 217 46 10 chrX 85194749 85196135 -77403795 + L1M3 LINE L1 118 1553 -5310 4435 119 0 3 chrX 85196134 85196791 -77403139 + L1PB2 LINE L1 5380 6034 -117 * 2251 197 31 15 chrX 85196798 85197644 -77402286 + L1M3 LINE L1 5564 6426 -458 381 287 41 0 chrX 85197643 85197815 -77402115 - L1MDb LINE L1 -5542 867 663 * 276 329 116 12 chrX 85197845 85198009 -77401921 - L1MDb LINE L1 -5852 557 377 * 1292 310 60 32 chrX 85197995 85198557 -77401373 - L1MDb LINE L1 -5810 599 22 371 320 13 44 chrX 85198594 85198734 -77401196 - L1MEc LINE L1 -3611 2518 2386 1331 245 137 54 chrX 85198734 85199310 -77400620 - MLT1E2 LTR MaLR -2 624 1 371 320 13 44 chrX 85199310 85199397 -77400533 - L1MEc LINE L1 -3743 2386 2298 428 325 78 11 chrX 85199435 85199703 -77400227 - L1MEc LINE L1 -4049 2261 1976 322 347 136 6 chrX 85200017 85200334 -77399596 - L1MEc LINE L1 -4642 1668 1311 383 301 51 10 chrX 85200450 85200646 -77399284 - L1MEc LINE L1 -4969 1150 947 22 0 0 0 chrX 85200650 85200672 -77399258 + AT_rich Low_complexity Low_complexity 1 22 0 351 298 68 58 chrX 85201641 85202011 -77397919 - L1MEc LINE L1 -5146 989 571 302 296 17 0 chrX 85202290 85202405 -77397525 - MER103 DNA DNA -48 118 2 231 61 0 0 chrX 85202662 85202695 -77397235 + (CA)n Simple_repeat Simple_repeat 2 34 0 1309 151 45 17 chrX 85204615 85204907 -77395023 + L1MA8 LINE L1 5987 6286 -5 1874 128 113 30 chrX 85205663 85205999 -77393931 + THE1B LTR MaLR 1 364 0 395 283 34 34 chrX 85206425 85206602 -77393328 + MER112 DNA MER1_type 84 260 0 22 70 0 0 chrX 85206725 85206768 -77393162 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chrX 85206902 85206930 -77393000 + AT_rich Low_complexity Low_complexity 1 28 0 226 327 93 9 chrX 85207241 85207348 -77392582 + L2 LINE L2 3194 3309 -4 192 150 50 0 chrX 85207412 85207452 -77392478 + L2 LINE L2 3271 3312 -1 755 236 35 70 chrX 85208104 85208363 -77391567 - L1ME2 LINE L1 -1 6163 5914 415 268 50 39 chrX 85208366 85208646 -77391284 - L1ME2 LINE L1 -329 5835 5553 254 368 36 42 chrX 85209126 85209319 -77390611 + MIR SINE MIR 2 193 -69 180 314 87 48 chrX 85209724 85209931 -77389999 + L2 LINE L2 3093 3307 -6 954 237 59 8 chrX 85210537 85210889 -77389041 - L1MC4 LINE L1 -201 6143 5742 662 154 8 24 chrX 85210899 85211022 -77388908 - L1PA15 LINE L1 -6 6159 6039 4336 101 38 0 chrX 85211204 85211835 -77388095 + HERVL-A2 LTR ERVL 5000 5654 0 440 85 0 0 chrX 85211835 85211894 -77388036 + MLT2A2 LTR ERVL 1 59 -394 3144 142 5 8 chrX 85211894 85212454 -77387476 - L1PA15 LINE L1 -386 5779 5220 * 3681 217 29 1 chrX 85212451 85213256 -77386674 + L1P LINE L1 1831 2657 -3489 522 265 114 25 chrX 85213296 85213654 -77386276 - MER52A LTR ERV1 -148 488 202 * 702 251 29 11 chrX 85213630 85213805 -77386125 - LTR28 LTR ERV1 -842 178 1 1293 245 17 0 chrX 85213807 85214154 -77385776 + L1P LINE L1 2660 3012 -3134 226 343 44 7 chrX 85215098 85215235 -77384695 + L2 LINE L2 1917 2058 -1256 2018 129 46 34 chrX 85215888 85216237 -77383693 - THE1B LTR MaLR -11 353 1 9556 137 70 0 chrX 85216237 85217714 -77382216 - THE1B-int LTR MaLR 0 1580 1 1933 149 36 36 chrX 85217714 85218077 -77381853 - THE1B LTR MaLR 0 364 2 379 325 34 3 chrX 85218156 85218296 -77381634 - MIR SINE MIR -63 145 25 1122 268 55 14 chrX 85218825 85219076 -77380854 + L1ME1 LINE L1 4822 5061 -1085 498 108 0 0 chrX 85219076 85219150 -77380780 + (TA)n Simple_repeat Simple_repeat 1 74 0 1122 268 55 14 chrX 85219150 85219387 -77380543 + L1ME1 LINE L1 5061 5330 -816 2099 147 43 0 chrX 85219395 85219742 -77380188 - THE1B LTR MaLR -2 362 1 7103 167 87 18 chrX 85219742 85221219 -77378711 - THE1B-int LTR MaLR 0 1580 1 2585 123 0 3 chrX 85221219 85221584 -77378346 - THE1B LTR MaLR 0 364 1 1861 283 70 22 chrX 85221588 85221921 -77378009 + L1ME1 LINE L1 5333 5649 -517 432 0 0 0 chrX 85221921 85221969 -77377961 + (CA)n Simple_repeat Simple_repeat 2 49 0 1861 283 70 22 chrX 85221969 85222412 -77377518 + L1ME1 LINE L1 5649 6146 -20 18117 179 30 14 chrX 85222562 85230147 -77369783 - L1MA1 LINE L1 0 7721 14 307 363 13 32 chrX 85230287 85230444 -77369486 - L2 LINE L2 -12 3301 3148 2803 200 34 15 chrX 85230444 85231058 -77368872 - MSTB-int LTR MaLR -992 659 34 1610 223 78 13 chrX 85231077 85231472 -77368458 - MSTB LTR MaLR -5 421 1 21 36 0 0 chrX 85232135 85232163 -77367767 + AT_rich Low_complexity Low_complexity 1 28 0 1162 204 97 60 chrX 85232710 85233062 -77366868 + MLT1A1 LTR MaLR 1 365 0 1506 223 0 13 chrX 85233316 85233630 -77366300 + AluJo SINE Alu 1 310 -2 23 78 0 0 chrX 85234144 85234195 -77365735 + AT_rich Low_complexity Low_complexity 1 51 0 34 0 0 0 chrX 85234692 85234726 -77365204 + AT_rich Low_complexity Low_complexity 1 34 0 2235 150 39 0 chrX 85234970 85235331 -77364599 - THE1C LTR MaLR 0 375 1 8853 132 58 37 chrX 85235331 85236880 -77363050 - THE1C-int LTR MaLR 0 1580 1 2587 116 8 0 chrX 85236880 85237252 -77362678 - THE1C LTR MaLR 0 375 1 28 86 0 0 chrX 85237798 85237868 -77362062 + AT_rich Low_complexity Low_complexity 1 70 0 38 39 0 0 chrX 85237946 85237998 -77361932 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chrX 85238623 85238651 -77361279 + AT_rich Low_complexity Low_complexity 1 28 0 1553 212 0 19 chrX 85238950 85239261 -77360669 - AluJb SINE Alu -5 307 3 1990 131 3 10 chrX 85239274 85239572 -77360358 - AluSp SINE Alu -17 296 1 8331 197 20 2 chrX 85239792 85241317 -77358613 - THE1C-int LTR MaLR -98 1553 1 1713 203 129 8 chrX 85241317 85241696 -77358234 - THE1C LTR MaLR -2 426 2 409 282 95 37 chrX 85243136 85243726 -77356204 + L1MEc LINE L1 1904 2487 -3728 2529 274 46 6 chrX 85243825 85244747 -77355183 - L1MB8 LINE L1 -2 7136 6174 3181 168 68 19 chrX 85244817 85245496 -77354434 - L1MA8 LINE L1 -22 6269 5558 2140 151 108 55 chrX 85245510 85245578 -77354352 + LOR1a LTR ERV1 1 64 -433 2637 147 95 42 chrX 85245578 85246157 -77353773 + LTR66 LTR ERVL 1 610 0 2140 151 108 55 chrX 85246157 85246178 -77353752 + LOR1a LTR ERV1 64 82 -415 2173 118 3 0 chrX 85246178 85246482 -77353448 - AluSp SINE Alu -8 305 1 2140 151 108 55 chrX 85246482 85246861 -77353069 + LOR1a LTR ERV1 82 495 -2 826 230 16 5 chrX 85246862 85247053 -77352877 - L1MB8 LINE L1 -2103 5003 4811 192 77 0 0 chrX 85247053 85247079 -77352851 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1493 222 0 7 chrX 85247081 85247365 -77352565 - AluJo SINE Alu -30 282 1 531 171 27 0 chrX 85247373 85247484 -77352446 - L1MB8 LINE L1 -4977 2053 1940 2361 269 57 16 chrX 85247513 85248564 -77351366 - L1MCc LINE L1 -1201 5740 4647 1870 172 15 6 chrX 85248628 85248971 -77350959 - L1PA15 LINE L1 -4 6812 6467 201 39 0 0 chrX 85248972 85248998 -77350932 + (TTA)n Simple_repeat Simple_repeat 3 28 0 6951 57 10 0 chrX 85248998 85250137 -77349793 - L1PA7 LINE L1 -18 6136 5000 13774 230 28 10 chrX 85250138 85255305 -77344625 - L1PA15 LINE L1 -339 6477 1212 986 269 65 27 chrX 85255319 85255981 -77343949 - L1MCc LINE L1 -2354 4587 3901 26 30 0 0 chrX 85255981 85256014 -77343916 + AT_rich Low_complexity Low_complexity 1 33 0 1188 210 0 46 chrX 85256341 85256603 -77343327 + AluJb SINE Alu 1 250 -62 570 251 12 0 chrX 85256622 85256789 -77343141 + L1MA7 LINE L1 6111 6279 -12 21 0 0 0 chrX 85256790 85256811 -77343119 + AT_rich Low_complexity Low_complexity 1 21 0 470 304 86 34 chrX 85256935 85257532 -77342398 + L1MC/D LINE L1 4991 5613 -569 635 245 128 15 chrX 85257542 85257738 -77342192 - L1MCa LINE L1 -6105 321 104 293 262 69 0 chrX 85257871 85258016 -77341914 - L1MCc LINE L1 -4458 2483 2329 3216 140 29 20 chrX 85258035 85258584 -77341346 - MER41A LTR ERV1 0 554 1 1894 123 30 7 chrX 85258584 85258884 -77341046 - MER41A-int LTR ERV1 -2 5944 5638 * 10100 139 41 25 chrX 85258881 85261635 -77338295 - MER41A-int LTR ERV1 -462 4553 2167 674 158 0 0 chrX 85261634 85261748 -77338182 - MER41A-int LTR ERV1 -3932 2014 1901 * 2486 154 36 11 chrX 85261750 85262335 -77337595 - MER41A-int LTR ERV1 -4231 3585 648 * 5296 140 47 5 chrX 85262318 85263141 -77336789 - MER41B-int LTR ERV1 -5087 859 2 1306 132 5 0 chrX 85263142 85263339 -77336591 - MER41B LTR ERV1 0 635 438 4560 68 108 2 chrX 85263383 85264005 -77335925 + LTR12 LTR ERV1 1 688 0 21 0 0 0 chrX 85264012 85264033 -77335897 + AT_rich Low_complexity Low_complexity 1 21 0 1188 210 306 10 chrX 85264065 85264460 -77335470 + MER101B LTR ERV1 8 519 -51 204 135 0 0 chrX 85264602 85264639 -77335291 + (CA)n Simple_repeat Simple_repeat 2 38 0 877 297 80 43 chrX 85264639 85265411 -77334519 - L1MCc LINE L1 -4903 1520 817 336 288 37 122 chrX 85265599 85266002 -77333928 - L1MCc LINE L1 -5629 793 84 1803 247 103 21 chrX 85266129 85267322 -77332608 - L1MC4 LINE L1 -130 7912 6472 2280 102 0 3 chrX 85268097 85268392 -77331538 + AluSx SINE Alu 1 294 -18 2034 249 89 73 chrX 85268566 85269520 -77330410 + L1MC2 LINE L1 69 985 -5579 2107 128 24 3 chrX 85269520 85269856 -77330074 + MER61A LTR ERV1 1 343 0 2034 249 89 73 chrX 85269856 85270666 -77329264 + L1MC2 LINE L1 985 1781 -4783 1250 239 93 71 chrX 85270673 85271438 -77328492 + L1MC2 LINE L1 4222 4977 -1587 541 290 94 27 chrX 85271489 85271817 -77328113 - LTR43 LTR ERV1 -66 536 187 1307 244 55 30 chrX 85272164 85272693 -77327237 + L1MC2 LINE L1 4975 5516 -1048 1973 234 27 12 chrX 85272696 85273175 -77326755 + L1MC2 LINE L1 6275 6760 -2 838 216 16 0 chrX 85273176 85273366 -77326564 + L1MC3 LINE L1 5823 6015 -1770 313 242 79 36 chrX 85273391 85273647 -77326283 - L1ME LINE L1 -389 5773 5403 546 275 58 55 chrX 85273781 85273863 -77326067 - L1ME LINE L1 -875 5271 5191 186 43 0 0 chrX 85273863 85273886 -77326044 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2010 99 26 4 chrX 85273888 85274161 -77325769 - AluSx SINE Alu -31 281 3 546 275 58 55 chrX 85274161 85274475 -77325455 - L1ME LINE L1 -955 5191 4871 588 188 25 5 chrX 85274542 85274685 -77325245 - L1 LINE L1 -2047 4099 3959 943 148 25 5 chrX 85274685 85274881 -77325049 + L1MA7 LINE L1 6092 6291 0 246 284 78 10 chrX 85275091 85275193 -77324737 - MIR SINE MIR -2 260 152 447 299 9 0 chrX 85275195 85275302 -77324628 + L2 LINE L2 3164 3271 -1 1678 176 71 31 chrX 85275348 85275672 -77324258 + MER1B DNA MER1_type 1 337 0 233 371 35 35 chrX 85276005 85276148 -77323782 + MER5B DNA MER1_type 3 145 -33 708 321 69 17 chrX 85276180 85276526 -77323404 + LTR16A LTR ERVL 46 409 -41 541 291 39 43 chrX 85276552 85276806 -77323124 + L1MDa LINE L1 17 269 -6271 476 278 0 6 chrX 85277031 85277211 -77322719 + L1MDa LINE L1 2746 2924 -3616 558 191 21 7 chrX 85277216 85277357 -77322573 + L1MB8 LINE L1 6017 6159 -19 1587 98 74 0 chrX 85277371 85277627 -77322303 - L1MA2 LINE L1 0 6304 6030 243 250 150 20 chrX 85277730 85277830 -77322100 + L2 LINE L2 3189 3301 -12 1751 188 21 47 chrX 85278248 85278673 -77321257 - MLT2D LTR ERVL 0 414 1 6264 196 30 40 chrX 85278673 85279125 -77320805 - ERVL-D LTR ERVL -7 5757 5302 1027 215 225 0 chrX 85279125 85279423 -77320507 + MER47A DNA MER2_type 1 365 -1 6264 196 30 40 chrX 85279423 85280361 -77319569 - ERVL-D LTR ERVL -462 5302 4382 11412 238 29 12 chrX 85280393 85282350 -77317580 + ERVL LTR ERVL 172 2093 -3671 1971 114 75 36 chrX 85282350 85282711 -77317219 - THE1C LTR MaLR 0 375 1 11412 238 29 12 chrX 85282711 85282742 -77317188 + ERVL LTR ERVL 2093 2122 -3642 2434 62 7 0 chrX 85282742 85283051 -77316879 + AluY SINE Alu 1 311 0 11412 238 29 12 chrX 85283051 85284369 -77315561 + ERVL LTR ERVL 2122 3650 -2114 1754 213 43 5 chrX 85284386 85284780 -77315150 + MER39 LTR ERV1 299 707 0 296 135 19 0 chrX 85285027 85285079 -77314851 + LTR49-int LTR ERV1 1318 1370 -4961 1159 199 128 78 chrX 85285291 85285451 -77314479 + LTR49-int LTR ERV1 1372 1523 -4808 2157 122 3 6 chrX 85285451 85285763 -77314167 + AluSx SINE Alu 1 311 -1 1159 199 128 78 chrX 85285763 85286104 -77313826 + LTR49-int LTR ERV1 1523 1898 -4433 1169 285 19 6 chrX 85286183 85286502 -77313428 + LTR49-int LTR ERV1 1908 2230 -4101 447 132 5 257 chrX 85286719 85286818 -77313112 - MER54A LTR ERVL -491 153 103 1153 71 7 0 chrX 85286818 85286973 -77312957 - L1MA1 LINE L1 -4 6298 6143 447 132 5 257 chrX 85286973 85287056 -77312874 - MER54A LTR ERVL -541 103 1 356 237 58 53 chrX 85287175 85287365 -77312565 + LTR49-int LTR ERV1 1290 1480 -3456 426 257 9 18 chrX 85287499 85287612 -77312318 + LTR49-int LTR ERV1 3260 3371 -2960 307 288 48 14 chrX 85287801 85287947 -77311983 + L1PA15-16 LINE L1 3 151 -6712 3704 161 6 28 chrX 85287953 85288625 -77311305 + L1PB3 LINE L1 5440 6096 -58 1142 61 0 249 chrX 85288625 85288918 -77311012 + L1PA5 LINE L1 5929 6148 -6 361 169 0 0 chrX 85288918 85288989 -77310941 + L1PB3 LINE L1 6081 6151 -3 312 130 0 43 chrX 85289069 85289138 -77310792 + MER39B-int LTR ERV1 2822 2887 -3871 579 243 16 58 chrX 85289173 85289362 -77310568 + MER39B-int LTR ERV1 6002 6182 -149 941 151 76 12 chrX 85289421 85289593 -77310337 + MER39B LTR ERV1 3 185 -468 460 211 53 23 chrX 85289598 85289731 -77310199 - LTR49-int LTR ERV1 -200 6131 5995 261 102 41 20 chrX 85289739 85289788 -77310142 + MER39B LTR ERV1 191 240 -413 1962 237 124 25 chrX 85289875 85290526 -77309404 - MER50 LTR ERV1 0 734 19 * 1965 193 24 15 chrX 85290523 85290932 -77308998 + MER39 LTR ERV1 295 707 0 3167 159 56 16 chrX 85291069 85291676 -77308254 + LTR29 LTR ERV1 6 653 0 1698 136 11 39 chrX 85292311 85292656 -77307274 - MER61B LTR ERV1 0 425 1 1824 169 73 14 chrX 85292818 85293162 -77306768 - THE1B LTR MaLR 0 364 1 11645 95 10 0 chrX 85293162 85294726 -77305204 - THE1B-int LTR MaLR 0 1580 1 236 135 0 0 chrX 85294726 85294763 -77305167 - THE1B LTR MaLR 0 355 319 1826 118 72 66 chrX 85294763 85295110 -77304820 - THE1B LTR MaLR -15 349 1 330 252 89 24 chrX 85295178 85295301 -77304629 + LTR48 LTR ERV1 1 131 -656 788 219 0 0 chrX 85295319 85295465 -77304465 - AluJb SINE Alu -18 294 149 2171 133 48 20 chrX 85295465 85295819 -77304111 - THE1B LTR MaLR 0 364 1 4252 131 17 6 chrX 85295826 85296520 -77303410 - MER4E LTR ERV1 0 779 78 553 237 17 0 chrX 85296520 85296638 -77303292 - AluJb SINE Alu -190 122 3 716 260 71 21 chrX 85296650 85297015 -77302915 + LTR29 LTR ERV1 152 569 -75 2188 215 53 70 chrX 85297015 85297542 -77302388 + LTR8A LTR ERV1 1 513 -214 2705 213 31 83 chrX 85297542 85298316 -77301614 - MER50 LTR ERV1 0 734 1 2188 215 53 70 chrX 85298316 85298528 -77301402 + LTR8A LTR ERV1 513 727 0 316 208 13 13 chrX 85298528 85298604 -77301326 + LTR49 LTR ERV1 520 595 0 973 208 82 88 chrX 85298605 85299013 -77300917 - LTR48 LTR ERV1 -69 718 205 2251 74 0 0 chrX 85299013 85299296 -77300634 - AluY SINE Alu -2 309 27 973 208 82 88 chrX 85299296 85299496 -77300434 - LTR48 LTR ERV1 -582 205 5 323 169 0 26 chrX 85299733 85299810 -77300120 + (TATG)n Simple_repeat Simple_repeat 2 76 0 184 226 217 78 chrX 85300136 85300251 -77299679 + MER5A DNA MER1_type 37 167 -22 1060 216 5 0 chrX 85300744 85300957 -77298973 - MER101B LTR ERV1 -355 215 2 27 73 0 0 chrX 85301120 85301175 -77298755 + AT_rich Low_complexity Low_complexity 1 55 0 1428 169 33 3 chrX 85301980 85302282 -77297648 - L1MA6 LINE L1 0 6300 5990 370 272 54 92 chrX 85302354 85302538 -77297392 + MER5B DNA MER1_type 2 178 0 26 30 0 0 chrX 85302549 85302582 -77297348 + AT_rich Low_complexity Low_complexity 1 33 0 22 94 0 0 chrX 85302909 85302973 -77296957 + AT_rich Low_complexity Low_complexity 1 64 0 2180 172 3 0 chrX 85303045 85303429 -77296501 - L1PB3 LINE L1 -3 6151 5767 4856 243 30 21 chrX 85303429 85306112 -77293818 - L1PBa LINE L1 -4208 2655 878 2236 108 74 0 chrX 85306112 85306463 -77293467 + MER51B LTR ERV1 1 377 0 4856 243 30 21 chrX 85306463 85307344 -77292586 - L1PBa LINE L1 -5985 878 6 508 224 10 0 chrX 85307556 85307654 -77292276 + FLAM_A SINE Alu 10 108 -34 361 339 99 48 chrX 85308477 85308769 -77291161 - L1MEd LINE L1 -5377 742 436 2057 148 0 3 chrX 85308797 85309095 -77290835 - AluJb SINE Alu -15 297 1 290 248 8 104 chrX 85309180 85309305 -77290625 - LTR4-int LTR ERV1 -2134 2057 1945 36860 129 20 14 chrX 85309320 85315263 -77284667 - LTR4-int LTR ERV1 -696 7730 1754 694 130 0 0 chrX 85315263 85315371 -77284559 - LTR4-int LTR ERV1 -6565 1861 1754 * 10851 123 32 39 chrX 85315346 85317254 -77282676 - LTR4-int LTR ERV1 -6531 1895 2 921 151 151 21 chrX 85317254 85317492 -77282438 - LTR4 LTR ERV1 0 596 328 2651 156 13 0 chrX 85317774 85318228 -77281702 + L1PA15 LINE L1 5705 6164 -1 262 379 23 0 chrX 85318391 85318478 -77281452 + MER91A DNA MER1_type 2 90 -106 229 200 43 0 chrX 85318717 85318787 -77281143 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 0 0 0 chrX 85319173 85319195 -77280735 + AT_rich Low_complexity Low_complexity 1 22 0 317 308 69 13 chrX 85319618 85319777 -77280153 + L1M4 LINE L1 3605 3772 -2374 1717 244 82 28 chrX 85319778 85320389 -77279541 + LTR48B LTR ERV1 1 644 0 1973 138 13 26 chrX 85320702 85321014 -77278916 - AluSx SINE Alu -4 308 1 2108 136 0 0 chrX 85321175 85321469 -77278461 - AluSg SINE Alu -16 294 1 2185 110 0 3 chrX 85321633 85321934 -77277996 + AluY SINE Alu 3 302 -9 963 299 51 9 chrX 85321935 85322466 -77277464 - L1ME2 LINE L1 -231 5933 5381 2905 148 4 54 chrX 85322732 85323375 -77276555 + MER4B LTR ERV1 1 779 0 506 302 94 97 chrX 85323543 85323947 -77275983 + L1ME LINE L1 427 829 -5376 1178 174 0 48 chrX 85323947 85324177 -77275753 + AluJo SINE Alu 86 304 -8 342 261 0 0 chrX 85324189 85324281 -77275649 + L1ME LINE L1 832 923 -5282 2033 256 61 19 chrX 85324322 85325544 -77274386 + L1ME LINE L1 2061 3301 -2914 21 36 0 0 chrX 85325673 85325701 -77274229 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 85326956 85326981 -77272949 + AT_rich Low_complexity Low_complexity 1 25 0 2250 112 3 3 chrX 85327421 85327733 -77272197 - AluSx SINE Alu 0 312 1 2595 115 43 17 chrX 85327928 85328345 -77271585 - MSTA LTR MaLR 0 428 1 22 0 0 0 chrX 85328525 85328547 -77271383 + AT_rich Low_complexity Low_complexity 1 22 0 1913 131 68 14 chrX 85329353 85329704 -77270226 - THE1C LTR MaLR -5 370 1 9956 112 35 35 chrX 85329705 85331284 -77268646 - THE1C-int LTR MaLR -1 1579 1 1905 140 86 17 chrX 85331284 85331635 -77268295 - THE1C LTR MaLR 0 375 1 861 382 27 15 chrX 85331699 85332110 -77267820 - L2 LINE L2 -2891 423 8 2104 171 60 7 chrX 85332432 85332835 -77267095 + MSTB LTR MaLR 3 426 0 7146 195 27 53 chrX 85332841 85333021 -77266909 + MSTB-int LTR MaLR 7 190 -1461 1360 158 143 15 chrX 85333021 85333286 -77266644 + AluSq SINE Alu 1 299 -4 7146 195 27 53 chrX 85333286 85334465 -77265465 + MSTB-int LTR MaLR 190 1315 -336 2302 99 0 0 chrX 85334465 85334759 -77265171 + AluSg SINE Alu 1 294 -16 7146 195 27 53 chrX 85334759 85335082 -77264848 + MSTB-int LTR MaLR 1315 1645 -6 1566 190 119 22 chrX 85335088 85335457 -77264473 + MSTB LTR MaLR 1 405 -21 2714 102 6 0 chrX 85336818 85337180 -77262750 + THE1B LTR MaLR 1 364 0 22 35 0 0 chrX 85337183 85337212 -77262718 + AT_rich Low_complexity Low_complexity 1 29 0 474 18 0 0 chrX 85337274 85337329 -77262601 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 378 0 0 0 chrX 85337590 85337632 -77262298 + (TTCTC)n Simple_repeat Simple_repeat 3 44 0 1268 155 0 16 chrX 85337632 85337826 -77262104 - AluSg/x SINE Alu -31 281 91 576 179 194 51 chrX 85337827 85338023 -77261907 - MER95 LTR ERV -199 232 9 350 284 94 66 chrX 85338025 85338419 -77261511 - L1M4 LINE L1 -1120 5026 4622 24 85 0 0 chrX 85338516 85338575 -77261355 + AT_rich Low_complexity Low_complexity 1 59 0 304 348 9 0 chrX 85338664 85338776 -77261154 - L1MC4 LINE L1 -1105 6937 6825 46 19 0 0 chrX 85338830 85338883 -77261047 + AT_rich Low_complexity Low_complexity 1 53 0 4045 189 28 5 chrX 85338913 85339895 -77260035 + L1 LINE L1 4369 5372 -774 3560 203 23 87 chrX 85339895 85341086 -77258844 + MER39B-int LTR ERV1 5074 6188 -143 2991 171 14 36 chrX 85341150 85341789 -77258141 + MER39B LTR ERV1 29 653 0 2401 220 96 14 chrX 85341789 85342589 -77257341 - L1MB7 LINE L1 -63 6121 5256 301 250 13 98 chrX 85342595 85342831 -77257099 - L1MB7 LINE L1 -1459 4687 4472 927 145 30 30 chrX 85342931 85343131 -77256799 - L1MA7 LINE L1 -3 6288 6089 212 230 14 27 chrX 85343439 85343513 -77256417 + A-rich Low_complexity Low_complexity 3 75 0 876 251 52 0 chrX 85343767 85344058 -77255872 + L1M4 LINE L1 2639 2944 -3202 * 2813 121 26 0 chrX 85344048 85344580 -77255350 - L1PA14 LINE L1 -481 5680 5139 2339 96 14 14 chrX 85344574 85344938 -77254992 + L1PA14 LINE L1 5671 6034 -127 * 3266 102 10 10 chrX 85344580 85345063 -77254867 + L1PA14 LINE L1 5671 6159 -2 4872 246 15 62 chrX 85345064 85345162 -77254768 + L1M4 LINE L1 2928 3029 -3117 954 202 83 0 chrX 85345162 85345380 -77254550 - MER46A DNA MER2_type 0 236 1 4872 246 15 62 chrX 85345380 85345841 -77254089 + L1M4 LINE L1 3029 3510 -2636 1875 141 73 17 chrX 85345841 85346196 -77253734 - THE1C LTR MaLR 0 375 1 4872 246 15 62 chrX 85346196 85347470 -77252460 + L1M4 LINE L1 3510 4677 -1469 22 56 0 0 chrX 85348451 85348487 -77251443 + AT_rich Low_complexity Low_complexity 1 36 0 9701 64 0 0 chrX 85348490 85349740 -77250190 - L1P LINE L1 -3679 2467 1218 7203 50 1 0 chrX 85349740 85351329 -77248601 + L1PA5 LINE L1 4566 6154 0 618 259 92 6 chrX 85352044 85352218 -77247712 + MIR SINE MIR 72 260 -2 27 29 0 0 chrX 85352396 85352430 -77247500 + AT_rich Low_complexity Low_complexity 1 34 0 459 0 0 0 chrX 85352727 85352778 -77247152 + (TG)n Simple_repeat Simple_repeat 1 51 0 233 230 90 70 chrX 85352930 85353030 -77246900 + MLT1I LTR MaLR 308 409 0 199 188 0 50 chrX 85354371 85354451 -77245479 + GA-rich Low_complexity Low_complexity 2 77 0 1169 80 0 0 chrX 85354480 85354631 -77245299 - AluY SINE Alu -7 304 154 28 71 0 0 chrX 85355371 85355427 -77244503 + AT_rich Low_complexity Low_complexity 1 56 0 504 321 81 24 chrX 85356270 85356516 -77243414 - MIR SINE MIR -1 261 2 13757 180 43 18 chrX 85356598 85358300 -77241630 - L1PB1 LINE L1 0 6867 5208 351 0 0 0 chrX 85358300 85358339 -77241591 + (TTTTA)n Simple_repeat Simple_repeat 4 42 0 13757 180 43 18 chrX 85358339 85360123 -77239807 - L1PB1 LINE L1 -1659 5208 3469 1663 113 4 4 chrX 85360123 85360354 -77239576 - AluSx SINE Alu -81 231 1 13757 180 43 18 chrX 85360354 85363401 -77236529 - L1PB1 LINE L1 -3398 3469 1 776 167 0 14 chrX 85364725 85364863 -77235067 + AluJb SINE Alu 1 136 -176 23 0 0 0 chrX 85365982 85366005 -77233925 + AT_rich Low_complexity Low_complexity 1 23 0 7097 172 75 35 chrX 85366012 85367399 -77232531 + L1PA16 LINE L1 16 1458 -6107 6725 51 1 0 chrX 85367401 85368229 -77231701 - L1PA5 LINE L1 0 6154 5326 4415 60 12 5 chrX 85368225 85368821 -77231109 + L1PA5 LINE L1 4718 5317 -829 * 6753 148 23 8 chrX 85368817 85371227 -77228703 + L1PA16 LINE L1 1444 3927 -3638 1948 163 73 24 chrX 85371231 85371763 -77228167 + MLT2A2 LTR ERVL 1 554 0 4989 224 17 10 chrX 85371766 85373025 -77226905 + L1PA16 LINE L1 3930 5196 -2369 2121 82 0 0 chrX 85373019 85373329 -77226601 + L1PA7 LINE L1 5851 6160 0 * 2273 200 25 8 chrX 85373329 85373809 -77226121 + L1PA16 LINE L1 5198 5685 -1880 928 152 0 0 chrX 85373806 85373964 -77225966 + L1 LINE L1 3650 3807 -2339 * 4898 177 39 45 chrX 85373990 85375211 -77224719 + L1PA16 LINE L1 5704 6894 -691 2318 72 3 7 chrX 85375211 85375515 -77224415 - AluY SINE Alu -8 303 1 4898 177 39 45 chrX 85375515 85376195 -77223735 + L1PA16 LINE L1 6894 7577 -8 1043 238 64 81 chrX 85376208 85376900 -77223030 + L1M4 LINE L1 2977 3656 -3909 * 1969 166 90 44 chrX 85376897 85377242 -77222688 + L1MA9 LINE L1 5765 6093 -219 1685 158 81 113 chrX 85377242 85377684 -77222246 + MSTA LTR MaLR 1 428 0 1969 166 90 44 chrX 85377684 85377787 -77222143 + L1MA9 LINE L1 6093 6190 -122 246 62 0 0 chrX 85377787 85377819 -77222111 + (TA)n Simple_repeat Simple_repeat 2 33 0 1969 166 90 44 chrX 85377819 85377893 -77222037 + L1MA9 LINE L1 6190 6312 0 867 284 58 40 chrX 85377909 85378201 -77221729 + HAL1 LINE L1 2020 2326 -181 1903 192 45 33 chrX 85378201 85378622 -77221308 + MSTB LTR MaLR 1 426 0 867 284 58 40 chrX 85378622 85378808 -77221122 + HAL1 LINE L1 2326 2507 0 2332 150 16 60 chrX 85379870 85380317 -77219613 + MSTB1 LTR MaLR 1 427 -5 24 53 0 0 chrX 85381010 85381048 -77218882 + AT_rich Low_complexity Low_complexity 1 38 0 239 326 20 20 chrX 85381417 85381515 -77218415 + MER5B DNA MER1_type 1 98 -80 8509 216 82 24 chrX 85382077 85382426 -77217504 - L1MC2 LINE L1 -11 7747 7419 2358 81 0 10 chrX 85382426 85382735 -77217195 + AluSc SINE Alu 1 306 -3 8509 216 82 24 chrX 85382735 85384635 -77215295 - L1MC2 LINE L1 -339 7419 5403 5129 211 50 14 chrX 85384738 85386573 -77213357 - L1MC1 LINE L1 0 6613 4711 2480 133 3 3 chrX 85386573 85386935 -77212995 + THE1B LTR MaLR 1 362 -2 5129 211 50 14 chrX 85386935 85387048 -77212882 - L1MC1 LINE L1 -1902 4711 4604 644 302 37 0 chrX 85387117 85387306 -77212624 - MLT2B1 LTR ERVL -322 198 3 2295 105 0 0 chrX 85387307 85387603 -77212327 + AluSg SINE Alu 1 296 -14 2702 98 5 8 chrX 85387619 85387995 -77211935 + THE1C LTR MaLR 1 375 0 369 286 50 0 chrX 85387996 85388136 -77211794 + L1M4 LINE L1 4840 4986 -2579 1052 252 7 29 chrX 85388149 85388427 -77211503 + AluJo SINE Alu 11 282 -30 2588 241 30 1 chrX 85388455 85389114 -77210816 + L1M4 LINE L1 4980 5657 -1908 264 191 16 32 chrX 85389176 85389239 -77210691 + MLT2B1 LTR ERVL 298 359 -161 3219 220 79 28 chrX 85389247 85391255 -77208675 - L1MC1 LINE L1 -2751 3675 1479 907 138 50 0 chrX 85391270 85391430 -77208500 - L1MA3 LINE L1 -8 6297 6130 11590 182 29 7 chrX 85391471 85394886 -77205044 - L1MA3 LINE L1 -102 7265 3772 8054 208 27 126 chrX 85394882 85397415 -77202515 - L1MA3 LINE L1 -4564 2645 1 * 1570 244 97 58 chrX 85398659 85399445 -77200485 - L1M4 LINE L1 -1171 5786 4961 191 36 36 0 chrX 85399445 85399473 -77200457 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1570 244 97 58 chrX 85399473 85399563 -77200367 - L1M4 LINE L1 -1996 4961 4876 1062 297 93 40 chrX 85399731 85399952 -77199978 - L1M4 LINE L1 -4536 2423 2215 186 103 0 0 chrX 85399952 85399981 -77199949 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1062 297 93 40 chrX 85399981 85400767 -77199163 - L1M4 LINE L1 -4744 2215 1356 279 232 61 0 chrX 85400778 85400860 -77199070 + L1M4b LINE L1 1330 1416 -5443 283 302 0 0 chrX 85400879 85400975 -77198955 - L1M4 LINE L1 -5555 1304 1209 375 121 0 0 chrX 85401098 85401156 -77198774 + (TG)n Simple_repeat Simple_repeat 1 58 0 895 333 38 10 chrX 85401513 85401906 -77198024 - L1M4 LINE L1 -5922 937 534 710 124 0 0 chrX 85402177 85402282 -77197648 - L1PA8A LINE L1 -29 6102 5998 23 0 0 0 chrX 85402693 85402716 -77197214 + AT_rich Low_complexity Low_complexity 1 23 0 2033 135 3 3 chrX 85403697 85403985 -77195945 - AluSx SINE Alu -22 290 3 30847 110 13 65 chrX 85404089 85410588 -77189342 + L1PA7 LINE L1 12 6153 -1 226 286 0 65 chrX 85411280 85411357 -77188573 + MER5B DNA MER1_type 4 75 -103 233 0 0 59 chrX 85411500 85411534 -77188396 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 273 346 0 20 chrX 85411624 85411725 -77188205 + MLT1K LTR MaLR 166 264 -324 356 354 0 0 chrX 85411864 85411991 -77187939 + MLT1K LTR MaLR 354 480 -108 665 332 46 11 chrX 85411999 85412261 -77187669 + LTR33 LTR ERVL 1 271 -250 309 234 102 55 chrX 85413511 85413767 -77186163 - L1MC5 LINE L1 -158 7803 7536 1493 249 20 9 chrX 85414394 85414739 -77185191 + MLT1A1 LTR MaLR 14 362 -3 369 338 116 5 chrX 85415977 85416175 -77183755 - MIR SINE MIR -6 256 37 26 30 0 0 chrX 85416834 85416867 -77183063 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 85417182 85417205 -77182725 + AT_rich Low_complexity Low_complexity 1 23 0 275 259 0 24 chrX 85417373 85417458 -77182472 + L2 LINE L2 2152 2234 -1080 195 365 47 0 chrX 85417700 85417785 -77182145 + L2 LINE L2 2723 2811 -503 24 32 0 0 chrX 85418013 85418044 -77181886 + AT_rich Low_complexity Low_complexity 1 31 0 234 309 32 43 chrX 85418056 85418150 -77181780 - MLT1H1 LTR MaLR -82 473 381 10615 219 52 42 chrX 85418246 85419389 -77180541 - L1PA16 LINE L1 -5 7599 6469 1714 191 7 3 chrX 85419389 85419683 -77180247 + AluJb SINE Alu 2 296 -16 10615 219 52 42 chrX 85419683 85420778 -77179152 - L1PA16 LINE L1 -1135 6469 5386 1281 70 0 0 chrX 85420778 85420934 -77178996 + AluSg SINE Alu 1 156 -154 10615 219 52 42 chrX 85420934 85423884 -77176046 - L1PA16 LINE L1 -2218 5386 2199 307 297 0 20 chrX 85424136 85424237 -77175693 - L1PA16 LINE L1 -5399 2182 2084 928 347 35 44 chrX 85424350 85424958 -77174972 - L1PA16 LINE L1 -6185 1389 788 13644 154 25 16 chrX 85424970 85425170 -77174760 - Tigger1 DNA MER2_type 0 2418 2221 1646 185 14 7 chrX 85425170 85425456 -77174474 + AluJo SINE Alu 1 288 -24 192 40 0 0 chrX 85425460 85425485 -77174445 + (CAA)n Simple_repeat Simple_repeat 2 26 0 13644 154 25 16 chrX 85425485 85427104 -77172826 - Tigger1 DNA MER2_type -199 2219 564 2682 10 0 0 chrX 85427104 85427394 -77172536 + AluY SINE Alu 17 306 -5 13644 154 25 16 chrX 85427394 85427957 -77171973 - Tigger1 DNA MER2_type -1854 564 8 220 270 36 117 chrX 85428430 85428541 -77171389 - MIR SINE MIR -98 164 63 222 118 0 0 chrX 85429887 85429921 -77170009 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1771 177 10 6 chrX 85430032 85430343 -77169587 + AluJb SINE Alu 1 312 0 448 310 23 12 chrX 85430442 85430613 -77169317 + CT-rich Low_complexity Low_complexity 3 175 0 349 129 0 0 chrX 85430887 85430949 -77168981 + L1PA13 LINE L1 6096 6157 -6 559 244 119 6 chrX 85431174 85431334 -77168596 - MIR SINE MIR -49 213 36 21 0 0 0 chrX 85432064 85432085 -77167845 + AT_rich Low_complexity Low_complexity 1 21 0 239 339 18 46 chrX 85432094 85432203 -77167727 - MER5A DNA MER1_type -72 117 12 6824 178 24 4 chrX 85482352 85484418 -77115512 - L1MA3 LINE L1 -240 6781 4674 3616 87 11 30 chrX 85484422 85484963 -77114967 - L1PA13 LINE L1 -5 6158 5628 519 197 31 16 chrX 85485063 85485190 -77114740 - L1MA3 LINE L1 -6734 129 1 21 0 0 0 chrX 85485376 85485397 -77114533 + AT_rich Low_complexity Low_complexity 1 21 0 325 339 75 11 chrX 85485409 85485583 -77114347 + L1M4 LINE L1 4040 4224 -1922 1695 306 73 35 chrX 85486082 85487489 -77112441 + L1M4 LINE L1 2641 4100 -2046 433 312 155 4 chrX 85487616 85488087 -77111843 + L1M4 LINE L1 4110 4651 -1495 26 50 0 0 chrX 85488107 85488147 -77111783 + AT_rich Low_complexity Low_complexity 1 40 0 674 44 11 0 chrX 85488195 85488285 -77111645 + (TTATG)n Simple_repeat Simple_repeat 4 94 0 1915 78 0 37 chrX 85488285 85488553 -77111377 - AluSx SINE Alu -51 261 4 2098 70 0 22 chrX 85488688 85488960 -77110970 + AluY SINE Alu 37 302 -9 273 300 0 10 chrX 85488961 85489061 -77110869 - L1MEd LINE L1 -1973 4156 4058 25 0 0 0 chrX 85489148 85489173 -77110757 + AT_rich Low_complexity Low_complexity 1 25 0 410 281 59 23 chrX 85489278 85489499 -77110431 - L1MEd LINE L1 -2370 3759 3531 1467 200 14 0 chrX 85489589 85489869 -77110061 - AluJb SINE Alu -28 284 1 295 273 120 9 chrX 85490092 85490426 -77109504 - L1MEd LINE L1 -2919 3210 2840 415 325 55 73 chrX 85490546 85490930 -77109000 - L1MEd LINE L1 -5643 476 100 262 273 61 10 chrX 85491608 85491707 -77108223 - MLT1I LTR MaLR -2 407 304 22 35 0 0 chrX 85492235 85492264 -77107666 + AT_rich Low_complexity Low_complexity 1 29 0 2549 210 35 7 chrX 85492276 85492848 -77107082 + L1MB3 LINE L1 5586 6173 -10 10364 186 34 5 chrX 85492892 85494576 -77105354 - L1PB1 LINE L1 -1 6866 5231 504 0 0 0 chrX 85494576 85494632 -77105298 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 10364 186 34 5 chrX 85494632 85496236 -77103694 - L1PB1 LINE L1 -1636 5231 3494 249 227 42 8 chrX 85496237 85496356 -77103574 + (TA)n Simple_repeat Simple_repeat 1 123 0 6118 111 39 6 chrX 85496356 85497345 -77102585 - L1PB1 LINE L1 -4458 2405 1384 498 215 26 97 chrX 85497345 85497540 -77102390 - MER4B-int LTR ERV1 -3751 2195 2015 198 103 0 0 chrX 85497571 85497600 -77102330 + (CA)n Simple_repeat Simple_repeat 2 30 0 828 127 22 0 chrX 85497633 85497767 -77102163 - MER4B-int LTR ERV1 -5698 1060 924 3365 202 8 5 chrX 85497796 85498411 -77101519 - MER4B-int LTR ERV1 -5917 841 225 1692 131 51 11 chrX 85498434 85498511 -77101419 - MER4B-int LTR ERV1 -6473 285 213 182 31 0 62 chrX 85498511 85498543 -77101387 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1692 131 51 11 chrX 85498543 85498739 -77101191 - MER4B-int LTR ERV1 -6545 213 1 3245 152 18 8 chrX 85498739 85499353 -77100577 - MER4B LTR ERV1 0 779 3 844 241 44 0 chrX 85499355 85499583 -77100347 - L1MCb LINE L1 -2311 4115 3878 * 2295 213 107 8 chrX 85499581 85500284 -77099646 - L1MCb LINE L1 -3953 2473 1702 1760 152 3 46 chrX 85500288 85500649 -77099281 - MER4A LTR ERV1 0 664 261 239 111 22 22 chrX 85500649 85500694 -77099236 - MER4A LTR ERV1 -566 98 54 1917 222 49 49 chrX 85500725 85500801 -77099129 - L1MCb LINE L1 -4821 1605 1531 2547 60 0 0 chrX 85500801 85501100 -77098830 - AluY SINE Alu -12 299 1 1917 222 49 49 chrX 85501100 85502040 -77097890 - L1MCb LINE L1 -4895 1531 609 422 223 40 2 chrX 85502078 85502191 -77097739 - LTR9B LTR ERV1 0 644 557 290 250 0 0 chrX 85502315 85502375 -77097555 + LTR4 LTR ERV1 298 357 -239 1256 167 7 92 chrX 85502461 85502767 -77097163 + LTR4 LTR ERV1 317 596 0 2097 234 65 13 chrX 85502767 85503292 -77096638 - LTR9B LTR ERV1 -86 558 7 1442 167 7 11 chrX 85503298 85503563 -77096367 - HUERS-P3 LTR ERV1 0 8919 6828 780 149 30 6 chrX 85503873 85504041 -77095889 - HUERS-P3 LTR ERV1 -3691 4125 3954 490 212 0 9 chrX 85504042 85504155 -77095775 - HUERS-P3 LTR ERV1 -1934 6985 6874 3474 198 13 5 chrX 85504165 85504800 -77095130 - HUERS-P3 LTR ERV1 -2007 6912 6273 1544 152 64 0 chrX 85504791 85505041 -77094889 - HUERS-P3 LTR ERV1 -3753 5166 4901 * 742 167 91 0 chrX 85505042 85505174 -77094756 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 9197 165 14 2 chrX 85505167 85506643 -77093287 - HUERS-P3 LTR ERV1 -5635 3284 1791 4922 176 30 12 chrX 85506640 85507525 -77092405 - HUERS-P3 LTR ERV1 -7267 1652 752 * 2868 203 34 19 chrX 85507562 85508187 -77091743 - HUERS-P3 LTR ERV1 -8285 634 1 2760 211 58 7 chrX 85508187 85508794 -77091136 - LTR9B LTR ERV1 0 644 7 2657 221 11 81 chrX 85508796 85509264 -77090666 - L1MCa LINE L1 -5342 754 389 2120 45 0 0 chrX 85509264 85509564 -77090366 + AluY SINE Alu 34 333 0 2657 221 11 81 chrX 85509564 85509902 -77090028 - L1MCa LINE L1 -5707 389 29 306 204 97 11 chrX 85510032 85510125 -77089805 - L1MD1 LINE L1 -39 6203 6103 471 290 26 0 chrX 85510143 85510336 -77089594 - L1MDa LINE L1 -2934 3472 3275 * 2010 273 98 24 chrX 85510335 85511266 -77088664 - L1MDa LINE L1 -4168 2238 1239 257 29 0 0 chrX 85511301 85511336 -77088594 - L1MA7 LINE L1 -21 6270 6236 1149 152 23 8 chrX 85511339 85511639 -77088291 + L1M2 LINE L1 5180 5482 -743 2371 257 63 116 chrX 85511730 85512873 -77087057 - L1MDa LINE L1 -5299 1110 28 3012 196 80 48 chrX 85512878 85513368 -77086562 - L1MC3 LINE L1 -16 7769 7237 3306 175 30 57 chrX 85513368 85514175 -77085755 + LTR1 LTR ERV1 1 785 0 3012 196 80 48 chrX 85514175 85514561 -77085369 - L1MC3 LINE L1 -548 7237 6865 3104 261 58 8 chrX 85514579 85514957 -77084973 - L1M4 LINE L1 -1164 4982 4624 1854 149 133 16 chrX 85514957 85515340 -77084590 + MSTA LTR MaLR 1 428 0 3104 261 58 8 chrX 85515340 85516060 -77083870 - L1M4 LINE L1 -1522 4624 3829 1517 212 5 81 chrX 85516106 85516526 -77083404 + MLT1B LTR MaLR 1 388 -2 478 234 86 82 chrX 85516527 85516831 -77083099 - L1MCa LINE L1 -5026 1400 1096 1258 207 102 110 chrX 85517127 85517537 -77082393 + MLT1A1-int LTR MaLR 1237 1643 -92 2369 267 60 67 chrX 85517538 85519352 -77080578 + L1MB7 LINE L1 2568 4368 -1778 2230 228 75 2 chrX 85519363 85520180 -77079750 + L1MB7 LINE L1 4944 5827 -357 32 75 0 0 chrX 85520531 85520598 -77079332 + AT_rich Low_complexity Low_complexity 1 67 0 27 73 0 0 chrX 85520679 85520734 -77079196 + AT_rich Low_complexity Low_complexity 1 55 0 185 280 96 88 chrX 85521183 85521308 -77078622 - MIR SINE MIR -19 243 118 2162 211 35 7 chrX 85521320 85521751 -77078179 + Tigger5 DNA MER2_type 10 452 -1871 429 165 25 0 chrX 85521762 85521841 -77078089 + Tigger5 DNA MER2_type 2243 2323 0 22 35 0 0 chrX 85521941 85521970 -77077960 + AT_rich Low_complexity Low_complexity 1 29 0 924 213 105 0 chrX 85522455 85522732 -77077198 + MER33 DNA MER1_type 15 320 -4 7110 234 13 9 chrX 85523694 85525208 -77074722 + ERVL LTR ERVL 417 1936 -3828 835 223 163 56 chrX 85525210 85525529 -77074401 + MLT1A1 LTR MaLR 1 353 -12 634 72 0 108 chrX 85525580 85525691 -77074239 + L1MA3 LINE L1 6198 6296 -9 393 311 0 0 chrX 85525704 85525826 -77074104 + MLT1A1-int LTR MaLR 44 165 -1570 2012 131 77 14 chrX 85525826 85526177 -77073753 - THE1C LTR MaLR 0 375 3 446 107 0 13 chrX 85526179 85526254 -77073676 - THE1C-int LTR MaLR 0 1580 1507 1412 256 98 19 chrX 85526261 85526691 -77073239 + MLT2B1 LTR ERVL 1 464 -56 13901 184 24 9 chrX 85526708 85530523 -77069407 + L1MA1 LINE L1 2150 6023 -279 295 288 25 0 chrX 85530623 85530703 -77069227 - MLT1E2 LTR MaLR -379 247 166 473 157 0 0 chrX 85530714 85530784 -77069146 + AluS SINE Alu 221 290 -22 358 297 34 46 chrX 85530820 85530995 -77068935 + L1ME LINE L1 5618 5790 -331 1105 298 47 14 chrX 85531006 85531499 -77068431 - L1MCb LINE L1 -5104 941 433 1004 273 37 56 chrX 85531481 85531907 -77068023 - L1M4 LINE L1 -1925 4221 3788 * 2309 64 4 0 chrX 85531907 85532234 -77067696 - AluY SINE Alu 0 328 1 1004 273 37 56 chrX 85532234 85532371 -77067559 - L1M4 LINE L1 -2358 3788 3668 543 31 0 0 chrX 85532371 85532436 -77067494 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1004 273 37 56 chrX 85532436 85532497 -77067433 - L1M4 LINE L1 -2478 3668 3607 2704 156 2 45 chrX 85532500 85533007 -77066923 - L1PA15 LINE L1 0 6165 5681 21 0 0 0 chrX 85533011 85533032 -77066898 + AT_rich Low_complexity Low_complexity 1 21 0 442 238 66 13 chrX 85533261 85533412 -77066518 - L1M4 LINE L1 -2915 3231 3073 2710 181 45 15 chrX 85533428 85533964 -77065966 + MER7C DNA MER2_type 2 553 -49 * 2837 185 87 0 chrX 85533961 85534490 -77065440 - Tigger4(Zombi) DNA MER2_type -2153 578 4 3666 176 46 92 chrX 85534496 85535817 -77064113 + L1MA7 LINE L1 5042 6290 -1 301 382 15 34 chrX 85535845 85536107 -77063823 + L1ME4a LINE L1 5641 5897 -224 438 94 16 0 chrX 85536725 85536789 -77063141 - THE1C LTR MaLR 0 364 300 1740 149 44 16 chrX 85536889 85537210 -77062720 - THE1C LTR MaLR -43 332 3 9773 132 11 37 chrX 85537216 85538826 -77061104 - THE1C-int LTR MaLR -4 1576 8 1701 142 65 39 chrX 85538826 85539164 -77060766 - THE1C LTR MaLR -28 347 1 26 64 0 0 chrX 85540885 85540932 -77058998 + AT_rich Low_complexity Low_complexity 1 47 0 535 279 181 21 chrX 85541067 85541354 -77058576 + LTR16C LTR ERVL 157 489 -2 189 0 0 0 chrX 85542010 85542031 -77057899 + (TC)n Simple_repeat Simple_repeat 2 22 0 1486 240 67 5 chrX 85542053 85542424 -77057506 + MSTD LTR MaLR 3 396 0 4813 263 53 47 chrX 85542427 85543092 -77056838 + MSTD-int LTR MaLR 3 662 -1073 2308 64 0 0 chrX 85543092 85543402 -77056528 + AluY SINE Alu 1 310 0 4813 263 53 47 chrX 85543402 85544457 -77055473 + MSTD-int LTR MaLR 662 1735 0 1082 261 82 13 chrX 85544457 85544763 -77055167 + MSTD LTR MaLR 1 327 -69 23 33 0 0 chrX 85544854 85544884 -77055046 + AT_rich Low_complexity Low_complexity 1 30 0 211 71 48 0 chrX 85544950 85544992 -77054938 + (TA)n Simple_repeat Simple_repeat 2 45 0 183 80 0 0 chrX 85544993 85545018 -77054912 + (TC)n Simple_repeat Simple_repeat 1 25 0 1919 214 100 25 chrX 85546569 85547050 -77052880 - MLT2B1 LTR ERVL -1 519 3 7725 182 44 11 chrX 85547051 85548504 -77051426 - ERVL-B1 LTR ERVL -6 5758 4258 7342 222 12 23 chrX 85548506 85550056 -77049874 - ERVL-B1 LTR ERVL -3846 1918 385 340 169 27 47 chrX 85550056 85550204 -77049726 + (TA)n Simple_repeat Simple_repeat 1 145 0 582 170 13 7 chrX 85550216 85550369 -77049561 + (TA)n Simple_repeat Simple_repeat 2 155 0 1044 293 10 7 chrX 85550395 85550702 -77049228 - ERVL-B1 LTR ERVL -5346 308 1 1785 222 48 44 chrX 85550702 85551220 -77048710 - MLT2B1 LTR ERVL 0 520 1 48 53 0 0 chrX 85551309 85551385 -77048545 + AT_rich Low_complexity Low_complexity 1 76 0 381 279 23 64 chrX 85551403 85551575 -77048355 - MIR SINE MIR -26 236 72 5063 138 31 3 chrX 85552479 85553549 -77046381 - L1PA16 LINE L1 0 6166 5107 23 0 0 0 chrX 85553677 85553700 -77046230 + AT_rich Low_complexity Low_complexity 1 23 0 762 179 0 15 chrX 85554326 85554460 -77045470 + FLAM_C SINE Alu 2 133 0 21 71 0 0 chrX 85554460 85554502 -77045428 + AT_rich Low_complexity Low_complexity 1 42 0 293 109 109 0 chrX 85554526 85554581 -77045349 - L1MA3 LINE L1 -1 6304 6244 258 212 0 15 chrX 85555193 85555259 -77044671 - L1MD1 LINE L1 -1 6241 6177 * 2889 90 0 2 chrX 85555257 85555658 -77044272 - L1PA7 LINE L1 -1227 4919 4520 6557 61 7 40 chrX 85555658 85556926 -77043004 + L1PA7 LINE L1 4911 6146 -8 456 211 42 0 chrX 85556926 85557021 -77042909 - L1MD1 LINE L1 -59 6183 6085 1102 252 95 5 chrX 85557027 85557456 -77042474 - L1MD1 LINE L1 -396 5963 5484 984 201 63 22 chrX 85557473 85557824 -77042106 - MSTD LTR MaLR -9 423 1 521 258 37 53 chrX 85558068 85558258 -77041672 - L2 LINE L2 -16 3297 3111 182 333 0 63 chrX 85558282 85558345 -77041585 - L2 LINE L2 -325 2988 2930 258 278 0 0 chrX 85558353 85558425 -77041505 - L2 LINE L2 -1015 2299 2228 294 356 88 21 chrX 85559489 85559728 -77040202 - MLT1J2 LTR MaLR -145 305 51 2084 163 20 3 chrX 85561556 85561912 -77038018 + MER57A LTR ERV1 1 362 -41 8444 148 28 41 chrX 85561912 85563362 -77036568 + MER57A-int LTR ERV1 14 1444 -6093 3460 127 4 0 chrX 85563359 85563849 -77036081 + MER57A-int LTR ERV1 6655 7146 -391 * 690 90 90 33 chrX 85563849 85563971 -77035959 + LTR54B LTR ERV1 3 131 -367 1495 121 43 31 chrX 85563971 85564066 -77035864 + MER57A-int LTR ERV1 7279 7371 -166 186 43 0 0 chrX 85564066 85564089 -77035841 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1495 121 43 31 chrX 85564089 85564249 -77035681 + MER57A-int LTR ERV1 7371 7537 0 2165 166 10 27 chrX 85564249 85564659 -77035271 + MER57A LTR ERV1 1 403 0 338 219 68 41 chrX 85565623 85565769 -77034161 + L1MC4 LINE L1 7892 8041 -1 7103 208 32 16 chrX 85565802 85568281 -77031649 - L1PA16 LINE L1 -144 6022 3479 22 0 0 0 chrX 85568424 85568446 -77031484 + AT_rich Low_complexity Low_complexity 1 22 0 20983 162 23 6 chrX 85568544 85571172 -77028758 + L1M1 LINE L1 22 2728 -4837 2320 81 10 0 chrX 85571172 85571470 -77028460 + AluSc SINE Alu 1 301 -8 20983 162 23 6 chrX 85571470 85572480 -77027450 + L1M1 LINE L1 2728 3720 -3845 290 225 0 28 chrX 85572480 85572551 -77027379 + L1P LINE L1 4890 4958 -1188 1288 128 0 0 chrX 85572567 85572747 -77027183 + AluJb SINE Alu 117 296 -16 2939 219 29 20 chrX 85572763 85573267 -77026663 + L1M1 LINE L1 4624 5137 -2428 2877 102 0 5 chrX 85573267 85573680 -77026250 - L1PA13 LINE L1 -5 6158 5748 2939 219 29 20 chrX 85573680 85573912 -77026018 + L1M1 LINE L1 5137 5366 -2199 232 209 0 0 chrX 85573916 85573959 -77025971 + L1P LINE L1 5231 5273 -873 899 130 26 7 chrX 85574060 85574214 -77025716 + L1MA3 LINE L1 6148 6304 -1 227 333 14 0 chrX 85574683 85574752 -77025178 + MIR3 SINE MIR 124 193 -15 851 264 23 5 chrX 85574766 85574982 -77024948 - MER58A DNA MER1_type -4 220 1 2027 230 45 2 chrX 85575432 85576087 -77023843 - L1MB7 LINE L1 -301 5883 5197 2046 218 27 57 chrX 85576106 85576619 -77023311 - LTR53 LTR ERVL -21 498 1 4148 239 34 10 chrX 85576843 85577431 -77022499 - HERVL74 LTR ERVL -2335 3350 2728 2225 172 86 40 chrX 85577431 85577793 -77022137 + LTR49 LTR ERV1 1 400 -195 1919 157 0 16 chrX 85577793 85578098 -77021832 - AluJo SINE Alu -4 308 9 2225 172 86 40 chrX 85578098 85578304 -77021626 + LTR49 LTR ERV1 400 595 0 4148 239 34 10 chrX 85578304 85578700 -77021230 - HERVL74 LTR ERVL -2957 2728 2343 4150 115 14 62 chrX 85578708 85579419 -77020511 - LTR8 LTR ERV1 -14 677 1 816 195 6 17 chrX 85579431 85579605 -77020325 - HERVL74 LTR ERVL -3423 2262 2091 2414 210 23 6 chrX 85579761 85580233 -77019697 - HERVL74 LTR ERVL -3583 2102 1623 2004 258 62 81 chrX 85580247 85580999 -77018931 - MER21B LTR ERV1 -109 754 17 461 218 24 19 chrX 85581296 85581508 -77018422 - HERVL74 LTR ERVL -4061 1624 1313 3999 164 20 8 chrX 85581508 85582211 -77017719 + MER50 LTR ERV1 1 711 -23 707 199 41 14 chrX 85582293 85582439 -77017491 - HERVL74 LTR ERVL -4368 1317 1168 2427 228 26 33 chrX 85582439 85582655 -77017275 + L1M3 LINE L1 4896 5112 -1071 1683 125 50 43 chrX 85582655 85582935 -77016995 - AluSx SINE Alu -27 285 4 2427 228 26 33 chrX 85582935 85583627 -77016303 + L1M3 LINE L1 5112 5787 -396 1863 263 32 4 chrX 85584879 85585384 -77014546 - LTR53 LTR ERVL 0 519 1 2367 220 133 70 chrX 85585384 85586356 -77013574 - L1MB7 LINE L1 -944 5202 4144 1585 160 53 27 chrX 85586356 85586656 -77013274 - AluJo SINE Alu -2 310 3 2367 220 133 70 chrX 85586656 85586847 -77013083 - L1MB7 LINE L1 -2002 4144 3966 29 70 0 0 chrX 85586909 85586966 -77012964 + AT_rich Low_complexity Low_complexity 1 57 0 781 233 16 112 chrX 85588539 85588818 -77011112 + MLT2D LTR ERVL 83 423 -97 194 0 39 0 chrX 85588818 85588844 -77011086 + (TC)n Simple_repeat Simple_repeat 2 28 0 781 233 16 112 chrX 85588844 85588922 -77011008 + MLT2D LTR ERVL 423 507 -13 718 110 20 9 chrX 85589661 85589778 -77010152 - L1PA13 LINE L1 -238 5913 5802 1759 116 0 0 chrX 85589779 85590037 -77009893 + L1PA13 LINE L1 5902 6159 -4 269 51 26 0 chrX 85590063 85590102 -77009828 + (TA)n Simple_repeat Simple_repeat 2 41 0 2207 93 0 7 chrX 85590474 85590764 -77009166 - AluSx SINE Alu -24 288 1 24 0 0 0 chrX 85591051 85591075 -77008855 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrX 85592440 85592461 -77007469 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 85593089 85593119 -77006811 + AT_rich Low_complexity Low_complexity 1 30 0 213 318 124 39 chrX 85593173 85593302 -77006628 - MIR SINE MIR -52 210 71 312 191 119 79 chrX 85593396 85593522 -77006408 + L1MC3 LINE L1 5342 5472 -861 450 0 0 0 chrX 85593525 85593575 -77006355 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 5614 220 80 61 chrX 85593578 85594045 -77005885 + L1MC3 LINE L1 5660 6117 -1668 2155 104 14 0 chrX 85594045 85594342 -77005588 + AluSp SINE Alu 1 301 -12 5614 220 80 61 chrX 85594342 85595313 -77004617 + L1MC3 LINE L1 6117 7185 -600 238 234 0 0 chrX 85595313 85595360 -77004570 + MLT1H LTR MaLR 85 131 -418 5614 220 80 61 chrX 85595360 85595633 -77004297 + L1MC3 LINE L1 7185 7451 -334 8452 192 21 5 chrX 85595642 85597650 -77002280 + L1 LINE L1 13 2251 -5314 1963 145 7 0 chrX 85598041 85598338 -77001592 + AluSx SINE Alu 1 299 -13 1739 163 16 28 chrX 85599091 85599410 -77000520 - MER47A DNA MER2_type 0 366 52 323 188 100 25 chrX 85600195 85600275 -76999655 + MIR SINE MIR 103 188 -74 642 268 76 39 chrX 85600810 85601273 -76998657 - L1M4 LINE L1 -2982 3164 2685 321 271 0 66 chrX 85601375 85601541 -76998389 - L1M4 LINE L1 -3654 2492 2338 513 169 7 81 chrX 85601578 85601714 -76998216 - L1MB8 LINE L1 -1 6177 6052 * 4805 253 40 11 chrX 85601713 85603198 -76996732 - L1MEc LINE L1 -874 5341 3815 1638 198 73 0 chrX 85603199 85603557 -76996373 + Tigger2 DNA MER2_type 2 385 -2333 1436 116 26 0 chrX 85603555 85603788 -76996142 + Tigger2 DNA MER2_type 2404 2642 -76 * 267 205 27 89 chrX 85603788 85603900 -76996030 + L1 LINE L1 5062 5166 -2399 301 323 0 0 chrX 85603900 85603965 -76995965 - Tigger2 DNA MER2_type 0 2718 2654 3666 252 71 12 chrX 85603965 85605466 -76994464 - L1MEc LINE L1 -2501 3714 2171 370 286 14 48 chrX 85605498 85605708 -76994222 + L1M4 LINE L1 2514 2716 -3430 400 303 109 49 chrX 85605779 85606145 -76993785 - L1MEc LINE L1 -4298 2098 1711 265 330 0 0 chrX 85606276 85606388 -76993542 - L1M4 LINE L1 -3522 3326 3215 34 42 0 0 chrX 85607169 85607217 -76992713 + AT_rich Low_complexity Low_complexity 1 48 0 2358 86 0 19 chrX 85608137 85608452 -76991478 + AluSg SINE Alu 1 309 -1 509 245 35 0 chrX 85608637 85608780 -76991150 - MER63 DNA MER1_type 0 1062 915 591 219 39 0 chrX 85608796 85608924 -76991006 + L1M4b LINE L1 10 142 -6717 252 212 0 0 chrX 85608926 85608992 -76990938 + (TA)n Simple_repeat Simple_repeat 1 66 0 949 240 19 23 chrX 85609273 85609738 -76990192 + L1M4b LINE L1 400 921 -5938 7076 240 27 84 chrX 85609743 85610548 -76989382 - L1PA15-16 LINE L1 -1910 4939 4089 2395 85 0 0 chrX 85610548 85610855 -76989075 + AluSc SINE Alu 1 307 -2 7076 240 27 84 chrX 85610855 85611201 -76988729 - L1PA15-16 LINE L1 -2760 4089 3725 1731 100 0 0 chrX 85611201 85611430 -76988500 + AluSq SINE Alu 1 229 -84 7076 240 27 84 chrX 85611430 85614388 -76985542 - L1PA15-16 LINE L1 -3124 3725 1246 4089 100 20 3 chrX 85614560 85615150 -76984780 - MER4A LTR ERV1 0 600 1 351 278 54 135 chrX 85615275 85615667 -76984263 - L1M4 LINE L1 -5781 1068 709 970 328 40 12 chrX 85616335 85616735 -76983195 - L1M4 LINE L1 -6429 420 10 6721 153 44 69 chrX 85616738 85618180 -76981750 - Tigger2 DNA MER2_type -756 1962 557 285 237 0 0 chrX 85618181 85618240 -76981690 + Ricksha DNA DNA 296 354 -1692 1461 279 51 14 chrX 85618241 85618728 -76981202 + MLT2B2 LTR ERVL 11 515 0 9370 168 39 12 chrX 85618728 85620466 -76979464 + Ricksha DNA DNA 905 2689 -557 324 100 0 0 chrX 85620466 85620516 -76979414 + L1 LINE L1 4784 4833 -1313 1427 276 31 51 chrX 85620639 85621203 -76978727 + L1MCb LINE L1 75 628 -5417 1802 151 27 3 chrX 85621203 85621541 -76978389 - L1MA9 LINE L1 -2 6310 5965 1427 276 31 51 chrX 85621541 85621563 -76978367 + L1MCb LINE L1 628 649 -5396 987 247 74 11 chrX 85621543 85622048 -76977882 + L1MCb LINE L1 2285 2835 -3729 * 1880 119 0 34 chrX 85622048 85622369 -76977561 + AluSq SINE Alu 1 311 0 987 247 74 11 chrX 85622369 85622448 -76977482 + L1MCb LINE L1 2835 2908 -3656 2204 273 30 14 chrX 85623568 85624619 -76975311 + L1MB8 LINE L1 1621 2695 -4473 2477 11 0 0 chrX 85624623 85624894 -76975036 + AluYa5 SINE Alu 28 298 -13 6429 208 51 7 chrX 85624894 85626509 -76973421 + L1MB8 LINE L1 4449 6135 -1032 521 200 61 0 chrX 85626508 85626623 -76973307 + L1MB8 LINE L1 6596 6717 -616 * 1913 148 0 0 chrX 85626654 85626938 -76972992 - AluSx SINE Alu -28 284 1 589 224 0 19 chrX 85626938 85627060 -76972870 + L1MB8 LINE L1 6707 6826 -373 863 102 8 0 chrX 85627060 85627188 -76972742 + L1MA2 LINE L1 6169 6297 -7 589 224 0 19 chrX 85627188 85627222 -76972708 + L1MB8 LINE L1 6826 6859 -340 236 224 35 0 chrX 85627214 85627299 -76972631 + L1MA9 LINE L1 6223 6310 -2 * 180 0 0 0 chrX 85627417 85627437 -76972493 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2590 134 27 2 chrX 85627750 85628197 -76971733 - L1MA2 LINE L1 -8 7715 7258 8600 192 27 7 chrX 85628197 85629133 -76970797 - L1MA2 LINE L1 -679 7044 6128 450 0 0 0 chrX 85629133 85629183 -76970747 + (TG)n Simple_repeat Simple_repeat 1 50 0 8600 192 27 7 chrX 85629183 85630431 -76969499 - L1MA2 LINE L1 -1595 6128 4814 5808 220 42 14 chrX 85630436 85631705 -76968225 - L1MA2 LINE L1 -6240 1325 22 2135 120 0 0 chrX 85632292 85632592 -76967338 - AluSx SINE Alu -12 300 1 284 274 24 0 chrX 85633034 85633118 -76966812 + MIR3 SINE MIR 121 206 -2 22 56 0 0 chrX 85633675 85633711 -76966219 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chrX 85634680 85634702 -76965228 + AT_rich Low_complexity Low_complexity 1 22 0 366 91 0 0 chrX 85636003 85636058 -76963872 + (CA)n Simple_repeat Simple_repeat 2 56 0 526 282 45 6 chrX 85636218 85636374 -76963556 - MIR SINE MIR -55 207 46 297 370 0 17 chrX 85636435 85636554 -76963376 + L2 LINE L2 3197 3313 0 2809 222 32 10 chrX 85636828 85637514 -76962416 - L1MC3 LINE L1 -2 7783 7083 23 33 0 0 chrX 85687564 85687594 -76912336 + AT_rich Low_complexity Low_complexity 1 30 0 3192 175 7 5 chrX 85687594 85688176 -76911754 - L1PA16 LINE L1 -8 6158 5576 3441 228 23 21 chrX 85688184 85689108 -76910822 - L1 LINE L1 -1306 4840 3915 181 79 0 53 chrX 85692105 85692143 -76907787 + (TTC)n Simple_repeat Simple_repeat 1 36 0 3063 213 3 21 chrX 85692393 85693152 -76906778 - L1 LINE L1 -2228 3918 3174 2610 235 63 6 chrX 85693178 85693825 -76906105 - MER50 LTR ERV1 0 734 51 2114 256 22 18 chrX 85693844 85694513 -76905417 - L1PA15-16 LINE L1 -3411 3438 2767 876 179 13 7 chrX 85694519 85694670 -76905260 - L1PA15-16 LINE L1 -6486 363 212 262 115 33 0 chrX 85695626 85695687 -76904243 + (TA)n Simple_repeat Simple_repeat 2 64 0 1537 191 61 40 chrX 85695855 85696231 -76903699 - MER39 LTR ERV1 0 707 324 644 156 80 76 chrX 85696228 85696409 -76903521 - MER39 LTR ERV1 -509 178 1 * 2161 93 38 0 chrX 85696481 85696770 -76903160 - AluY SINE Alu -9 302 3 2268 95 0 0 chrX 85696778 85697062 -76902868 - AluSx SINE Alu -25 287 4 203 313 24 12 chrX 85697074 85697157 -76902773 - MIR SINE MIR -109 153 70 449 194 7 115 chrX 85697159 85697298 -76902632 + MLT1D LTR MaLR 1 109 -396 283 299 84 9 chrX 85697311 85697418 -76902512 + MER34B LTR ERV1 10 124 -441 586 243 54 38 chrX 85697549 85697788 -76902142 + MER34B LTR ERV1 320 562 -3 255 170 196 71 chrX 85698545 85698657 -76901273 + LTR49-int LTR ERV1 1371 1496 -4835 1848 189 53 3 chrX 85699225 85699600 -76900330 + MER57A LTR ERV1 8 401 -2 2280 244 88 47 chrX 85699602 85699793 -76900137 + MER57A-int LTR ERV1 1 183 -7354 2139 118 3 0 chrX 85699793 85700089 -76899841 - AluSx SINE Alu -15 297 1 2280 244 88 47 chrX 85700089 85700688 -76899242 + MER57A-int LTR ERV1 183 824 -6713 496 273 0 20 chrX 85700799 85700949 -76898981 + MER57A-int LTR ERV1 842 988 -4135 556 292 90 0 chrX 85700949 85701127 -76898803 + MER34C LTR ERV1 155 348 -237 851 213 0 0 chrX 85701405 85701555 -76898375 + FAM SINE Alu 10 159 -26 2142 91 7 17 chrX 85701573 85701871 -76898059 + AluSx SINE Alu 1 295 -17 423 203 39 112 chrX 85701873 85702126 -76897804 + MER57A-int LTR ERV1 1252 3578 -3730 1039 203 14 0 chrX 85702155 85702362 -76897568 + MER34B-int LTR ERV1 3141 3350 -2981 441 257 9 0 chrX 85702409 85702514 -76897416 + MER34B-int LTR ERV1 3348 3453 -2878 1720 212 45 89 chrX 85702619 85703117 -76896813 + MER34B-int LTR ERV1 1554 2072 -4259 4128 30 0 6 chrX 85703117 85703615 -76896315 + L1PA4 LINE L1 5661 6155 0 1720 212 45 89 chrX 85703615 85704251 -76895679 + MER34B-int LTR ERV1 2072 4253 -2078 381 180 40 10 chrX 85704293 85704393 -76895537 + MER34B-int LTR ERV1 1976 2078 -3045 909 266 48 86 chrX 85704445 85704544 -76895386 + MER34B-int LTR ERV1 343 444 -5887 752 131 17 91 chrX 85704544 85704720 -76895210 + L1PB3 LINE L1 5983 6145 -9 909 266 48 86 chrX 85704720 85705043 -76894887 + MER34B-int LTR ERV1 444 2100 -4231 549 189 26 37 chrX 85705062 85705291 -76894639 + MER34B-int LTR ERV1 1299 3128 -3203 344 188 14 90 chrX 85705448 85705592 -76894338 + MER34B-int LTR ERV1 1711 1843 -3093 2874 103 13 74 chrX 85705592 85705960 -76893970 + L1PA11 LINE L1 5681 6009 -165 2328 77 3 3 chrX 85705960 85706260 -76893670 + AluY SINE Alu 1 300 -11 2874 103 13 74 chrX 85706260 85706416 -76893514 + L1PA11 LINE L1 6009 6173 -1 421 141 71 40 chrX 85706557 85706656 -76893274 + MER34B-int LTR ERV1 3455 3556 -2775 1896 185 36 30 chrX 85706668 85707211 -76892719 - MLT2A2 LTR ERVL -11 543 1 8608 203 60 54 chrX 85707276 85708206 -76891724 + MER34B-int LTR ERV1 3625 4548 -1783 1427 218 3 33 chrX 85708206 85708513 -76891417 - AluJb SINE Alu -14 298 1 8608 203 60 54 chrX 85708513 85710272 -76889658 + MER34B-int LTR ERV1 4548 6330 -1 391 278 49 45 chrX 85710317 85710605 -76889325 + MER34B LTR ERV1 277 565 0 313 204 0 0 chrX 85710607 85710661 -76889269 + MLT1D LTR MaLR 129 182 -323 1505 199 12 45 chrX 85710770 85711107 -76888823 + MLT1D LTR MaLR 180 505 0 441 153 25 76 chrX 85711277 85711395 -76888535 + MER34B-int LTR ERV1 6219 6330 -1 225 295 147 0 chrX 85711402 85711497 -76888433 + MER34B LTR ERV1 7 115 -450 1936 168 13 13 chrX 85711502 85711877 -76888053 + THE1C LTR MaLR 1 375 0 2142 167 64 12 chrX 85712398 85712805 -76887125 + MSTA LTR MaLR 1 428 0 28 29 0 0 chrX 85713603 85713638 -76886292 + AT_rich Low_complexity Low_complexity 1 35 0 209 105 0 26 chrX 85713785 85713823 -76886107 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 2193 179 98 33 chrX 85714230 85714779 -76885151 - MER34C LTR ERV1 0 585 1 47 44 0 0 chrX 85715370 85715438 -76884492 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chrX 85715645 85715667 -76884263 + AT_rich Low_complexity Low_complexity 1 22 0 2231 100 3 0 chrX 85716147 85716448 -76883482 + AluY SINE Alu 1 302 -9 565 246 21 0 chrX 85716791 85716932 -76882998 - Tigger7 DNA MER2_type -11 2476 2333 2051 238 77 25 chrX 85716932 85717224 -76882706 + LTR48B LTR ERV1 1 276 -368 4802 171 26 10 chrX 85717224 85718113 -76881817 - MER4D LTR ERV1 0 903 1 2051 238 77 25 chrX 85718113 85718430 -76881500 + LTR48B LTR ERV1 276 642 -2 380 128 103 0 chrX 85718430 85718506 -76881424 - Tigger7 DNA MER2_type -149 2438 2355 15971 227 25 16 chrX 85718749 85720599 -76879331 - L1PA15 LINE L1 0 6816 4983 2411 80 10 3 chrX 85720599 85720910 -76879020 - AluSq SINE Alu 0 313 1 15971 227 25 16 chrX 85720910 85721869 -76878061 - L1PA15 LINE L1 -1833 4983 4033 2851 92 52 34 chrX 85721869 85722270 -76877660 + MLT2A2 LTR ERVL 1 412 -41 453 90 0 0 chrX 85722270 85722337 -76877593 + (CA)n Simple_repeat Simple_repeat 2 68 0 2851 92 52 34 chrX 85722337 85722380 -76877550 + MLT2A2 LTR ERVL 412 453 0 15971 227 25 16 chrX 85722380 85726086 -76873844 - L1PA15 LINE L1 -2783 4033 81 297 338 0 0 chrX 85726090 85726167 -76873763 + L2 LINE L2 3186 3262 -10 1455 175 108 74 chrX 85729457 85729874 -76870056 + LTR49 LTR ERV1 4 434 -161 248 264 22 11 chrX 85729868 85729959 -76869971 + LTR48 LTR ERV1 614 705 -82 * 3068 136 63 22 chrX 85730206 85730757 -76869173 + MER4B LTR ERV1 1 574 -36 4669 161 65 11 chrX 85730788 85731587 -76868343 + MER4B-int LTR ERV1 1 842 -5916 1199 126 28 28 chrX 85731615 85731829 -76868101 + MER4B-int LTR ERV1 924 1137 -5621 213 65 0 0 chrX 85731830 85731861 -76868069 + (TG)n Simple_repeat Simple_repeat 2 32 0 2243 255 65 19 chrX 85732055 85732748 -76867182 - MER50 LTR ERV1 0 734 10 5156 123 69 51 chrX 85732754 85734664 -76865266 + MER4B-int LTR ERV1 1410 2511 -4109 1355 244 36 15 chrX 85734664 85735000 -76864930 - MER61A LTR ERV1 0 343 1 25589 107 31 20 chrX 85735000 85739014 -76860916 - MER61A-int LTR ERV1 0 5217 1224 878 137 0 7 chrX 85739010 85739149 -76860781 - MER61A-int LTR ERV1 -3929 2017 1880 * 2532 138 45 19 chrX 85739149 85739614 -76860316 - MER61A-int LTR ERV1 -4377 840 364 1087 182 122 28 chrX 85739646 85739703 -76860227 - MER61A-int LTR ERV1 -4946 271 221 2182 125 70 14 chrX 85739703 85740048 -76859882 - THE1B LTR MaLR 0 364 1 1087 182 122 28 chrX 85740048 85740237 -76859693 - MER61A-int LTR ERV1 -4996 221 2 1515 212 58 6 chrX 85740237 85740562 -76859368 - MER61A LTR ERV1 0 343 2 3006 133 32 26 chrX 85740562 85741147 -76858783 + MER4B-int LTR ERV1 2507 3095 -3663 * 4015 151 53 62 chrX 85741133 85741333 -76858597 + MER4B-int LTR ERV1 3421 3621 -3137 287 89 0 22 chrX 85741333 85741378 -76858552 + MADE1 DNA Mariner 3 46 -34 4015 151 53 62 chrX 85741378 85741907 -76858023 + MER4B-int LTR ERV1 3621 4187 -2571 * 6852 131 61 18 chrX 85741906 85743072 -76856858 + MER4B-int LTR ERV1 4321 5536 -1222 3123 154 37 0 chrX 85743072 85743590 -76856340 + MER4B-int LTR ERV1 5736 6272 -486 2581 121 5 19 chrX 85743628 85744007 -76855923 + MER4B-int LTR ERV1 6381 6754 -4 2790 147 74 11 chrX 85744009 85744585 -76855345 + MER4B LTR ERV1 1 766 0 234 0 0 0 chrX 85745037 85745063 -76854867 + (A)n Simple_repeat Simple_repeat 1 26 0 983 74 7 15 chrX 85745205 85745340 -76854590 - AluSp/q SINE Alu -12 301 168 595 258 58 54 chrX 85745358 85745618 -76854312 + L1MCc LINE L1 1119 1379 -5044 314 248 143 0 chrX 85745683 85745788 -76854142 - LTR49 LTR ERV1 0 595 476 1999 154 16 39 chrX 85745790 85746174 -76853756 + THE1C LTR MaLR 1 375 0 7343 148 29 46 chrX 85746174 85747362 -76852568 + THE1C-int LTR MaLR 1 1167 -413 2326 98 0 0 chrX 85747362 85747658 -76852272 + AluSg SINE Alu 1 296 -14 7343 148 29 46 chrX 85747658 85747761 -76852169 + THE1C-int LTR MaLR 1167 1270 -310 6020 125 30 20 chrX 85747773 85748863 -76851067 + L1MA2 LINE L1 5206 6304 0 1116 274 44 24 chrX 85748875 85749696 -76850234 - L1M4 LINE L1 -3455 2927 2092 2698 263 60 28 chrX 85749764 85750921 -76849009 - L1M4 LINE L1 -4485 1899 777 927 239 96 49 chrX 85751368 85751815 -76848115 + L1ME1 LINE L1 4709 5176 -970 * 24969 155 25 17 chrX 85751809 85756046 -76843884 - L1PA10 LINE L1 -16 6467 2172 2197 60 0 0 chrX 85756046 85756311 -76843619 + AluY SINE Alu 36 300 -11 24969 155 25 17 chrX 85756311 85757726 -76842204 - L1PA10 LINE L1 -4311 2172 771 2544 192 12 4 chrX 85757732 85758227 -76841703 - L1PA10 LINE L1 -5373 502 4 1115 275 68 20 chrX 85758239 85758922 -76841008 + L1ME1 LINE L1 5159 5898 -268 2370 221 13 2 chrX 85758924 85759377 -76840553 + MLT2B2 LTR ERVL 1 458 -57 220 278 0 28 chrX 85759377 85759449 -76840481 + (TCTCTG)n Simple_repeat Simple_repeat 6 75 0 2771 107 19 0 chrX 85760261 85760680 -76839250 - L1PA8 LINE L1 -1089 5057 4631 6555 73 18 9 chrX 85760682 85761767 -76838163 + L1PA8 LINE L1 5060 6156 -16 2237 104 3 0 chrX 85761770 85762067 -76837863 - AluSg SINE Alu -12 298 1 2943 149 20 0 chrX 85762092 85762583 -76837347 - L1PA13 LINE L1 -11 6152 5652 3430 210 23 0 chrX 85762633 85763377 -76836553 + L1P4 LINE L1 3991 4751 -1395 2173 74 47 10 chrX 85763379 85763678 -76836252 + AluSg SINE Alu 1 310 0 23 54 0 0 chrX 85765947 85765984 -76833946 + AT_rich Low_complexity Low_complexity 1 37 0 751 174 40 29 chrX 85767875 85768058 -76831872 + MIR SINE MIR 31 213 -49 2881 186 6 6 chrX 85768157 85769024 -76830906 + L1P4 LINE L1 4739 5603 -558 229 260 0 0 chrX 85769854 85769904 -76830026 - L1MD3 LINE L1 -1328 6667 6618 23 33 0 0 chrX 85770154 85770184 -76829746 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chrX 85770339 85770370 -76829560 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chrX 85770409 85770456 -76829474 + AT_rich Low_complexity Low_complexity 1 47 0 297 0 0 0 chrX 85770459 85770492 -76829438 + (TG)n Simple_repeat Simple_repeat 2 34 0 502 353 16 5 chrX 85770588 85770775 -76829155 - MIR SINE MIR -56 206 18 2107 132 3 0 chrX 85771059 85771362 -76828568 + AluSx SINE Alu 1 304 -8 1032 255 46 35 chrX 85771829 85772186 -76827744 + MSTD LTR MaLR 1 396 0 1890 155 117 8 chrX 85772429 85772815 -76827115 + MSTA LTR MaLR 1 428 0 31 26 0 0 chrX 85773077 85773115 -76826815 + AT_rich Low_complexity Low_complexity 1 38 0 369 322 40 35 chrX 85773500 85773870 -76826060 + L1MCc LINE L1 28 399 -6024 431 282 56 31 chrX 85773947 85774234 -76825696 + L1ME2 LINE L1 4960 5253 -893 1511 225 61 30 chrX 85774243 85774312 -76825618 + L1ME2 LINE L1 5663 5728 -436 2220 109 0 0 chrX 85774312 85774614 -76825316 + AluSc SINE Alu 2 303 -6 1511 225 61 30 chrX 85774614 85775019 -76824911 + L1ME2 LINE L1 5728 6152 -12 324 374 0 8 chrX 85775062 85775185 -76824745 + MER5A DNA MER1_type 64 185 -4 2064 279 71 49 chrX 85775305 85776062 -76823868 - L1MEc LINE L1 -4923 1473 678 2175 87 3 3 chrX 85776062 85776371 -76823559 + AluY SINE Alu 1 309 -2 2064 279 71 49 chrX 85776371 85776807 -76823123 - L1MEc LINE L1 -5718 678 253 476 268 61 17 chrX 85776835 85777066 -76822864 - L1MDb LINE L1 -5000 1083 843 5140 127 15 1 chrX 85777365 85778161 -76821769 - L1PA16 LINE L1 0 6166 5360 444 301 81 56 chrX 85778221 85778630 -76821300 - L1MDb LINE L1 -5416 654 236 35 63 0 0 chrX 85779694 85779757 -76820173 + AT_rich Low_complexity Low_complexity 1 63 0 187 259 12 111 chrX 85779903 85779984 -76819946 - L2 LINE L2 -4 3309 3237 42 0 0 0 chrX 85780160 85780202 -76819728 + AT_rich Low_complexity Low_complexity 1 42 0 1586 136 59 95 chrX 85780485 85780874 -76819056 + THE1C LTR MaLR 1 375 0 7413 147 106 51 chrX 85780876 85782371 -76817559 + THE1B-int LTR MaLR 3 1580 0 1666 160 50 47 chrX 85782371 85782734 -76817196 + THE1B LTR MaLR 1 364 0 1678 265 40 19 chrX 85782735 85783207 -76816723 + LTR40a LTR ERVL 37 518 -1 2647 187 67 64 chrX 85784089 85784309 -76815621 + MER67B LTR ERV1 1 219 -442 2779 120 45 2 chrX 85784309 85784775 -76815155 - LTR19A LTR ERV1 0 486 1 2647 187 67 64 chrX 85784775 85784874 -76815056 + MER67B LTR ERV1 219 316 -345 2553 68 0 0 chrX 85784874 85785185 -76814745 - AluY SINE Alu 0 311 1 2647 187 67 64 chrX 85785185 85785523 -76814407 + MER67B LTR ERV1 316 661 0 285 347 54 7 chrX 85786166 85786313 -76813617 + MIR SINE MIR 30 183 -79 1844 166 88 111 chrX 85786315 85786929 -76813001 + MER4A LTR ERV1 1 600 0 350 347 138 15 chrX 85787917 85788113 -76811817 + L3 LINE CR1 473 692 -885 334 386 88 16 chrX 85788202 85788510 -76811420 + L3 LINE CR1 1235 1564 -13 24 0 0 0 chrX 85788558 85788582 -76811348 + AT_rich Low_complexity Low_complexity 1 24 0 2451 92 42 50 chrX 85788760 85789140 -76810790 + MER51B LTR ERV1 1 377 0 2591 146 44 17 chrX 85789410 85789883 -76810047 - LTR19A LTR ERV1 0 486 1 258 376 11 0 chrX 85790201 85790294 -76809636 - MIR3 SINE MIR -102 106 13 25 31 0 0 chrX 85792294 85792326 -76807604 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chrX 85792380 85792418 -76807512 + AT_rich Low_complexity Low_complexity 1 38 0 266 318 118 23 chrX 85793895 85794172 -76805758 - L1MC/D LINE L1 -2015 5793 5468 710 251 62 10 chrX 85794754 85794949 -76804981 - MIR SINE MIR -57 205 1 1568 194 51 23 chrX 85795124 85795516 -76804414 + L1MB1 LINE L1 5761 6163 -5 351 0 0 0 chrX 85796175 85796214 -76803716 + (CA)n Simple_repeat Simple_repeat 2 40 0 363 330 46 0 chrX 85796356 85796465 -76803465 - L2 LINE L2 -1 3271 3158 323 365 52 16 chrX 85796992 85797184 -76802746 - MIR SINE MIR -19 243 45 1542 80 0 68 chrX 85797819 85797902 -76802028 + L1MA1 LINE L1 6057 6144 -158 2163 116 0 3 chrX 85797902 85798212 -76801718 - AluSx SINE Alu -3 309 1 1542 80 0 68 chrX 85798212 85798392 -76801538 + L1MA1 LINE L1 6144 6302 0 1323 158 36 0 chrX 85798954 85799176 -76800754 + MER30 DNA MER1_type 1 230 0 3156 209 53 48 chrX 85799602 85800434 -76799496 - L1MA10 LINE L1 -3 6331 5496 1993 88 67 7 chrX 85800434 85800718 -76799212 - AluSx SINE Alu -11 301 1 2154 214 74 137 chrX 85800744 85802051 -76797879 - L1MA9 LINE L1 0 6312 5092 832 241 10 0 chrX 85802040 85802235 -76797695 + L1 LINE L1 4030 4226 -1920 * 5310 211 64 18 chrX 85802260 85803443 -76796487 + L1M1 LINE L1 13 1250 -6315 3122 211 28 0 chrX 85803440 85804008 -76795922 + L1M1 LINE L1 1463 2046 -5519 * 10492 190 59 46 chrX 85804005 85805095 -76794835 + L1M1 LINE L1 2565 3639 -3926 210 37 0 0 chrX 85805095 85805122 -76794808 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 10492 190 59 46 chrX 85805122 85805965 -76793965 + L1M1 LINE L1 3639 4469 -3096 1009 127 22 6 chrX 85805965 85806146 -76793784 + L1MA1 LINE L1 6119 6302 0 10492 190 59 46 chrX 85806146 85806933 -76792997 + L1M1 LINE L1 4469 5244 -2321 639 140 0 0 chrX 85806933 85807033 -76792897 - FLAM_C SINE Alu -12 131 32 10492 190 59 46 chrX 85807033 85808347 -76791583 + L1M1 LINE L1 5244 6753 -812 236 164 0 55 chrX 85808376 85808431 -76791499 + Alu SINE Alu 251 302 0 2980 176 9 7 chrX 85808449 85809024 -76790906 + L1 LINE L1 4553 5128 -1018 2074 134 0 3 chrX 85809063 85809081 -76790849 - AluSx SINE Alu 0 312 295 297 51 0 0 chrX 85809081 85809120 -76790810 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2074 134 0 3 chrX 85809120 85809414 -76790516 - AluSx SINE Alu -17 295 1 30 0 0 0 chrX 85809819 85809849 -76790081 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrX 85810075 85810096 -76789834 + AT_rich Low_complexity Low_complexity 1 21 0 218 303 64 20 chrX 85810384 85810520 -76789410 - MIR SINE MIR -2 206 57 181 191 0 111 chrX 85811250 85811313 -76788617 - L2 LINE L2 -306 2966 2911 6122 153 6 1 chrX 85811584 85812547 -76787383 - L1PA14 LINE L1 -4895 2686 1719 9949 241 39 9 chrX 85812554 85813891 -76786039 + L1PA14 LINE L1 2702 3999 -3585 2010 164 13 24 chrX 85813891 85814268 -76785662 - THE1C LTR MaLR -2 373 1 9949 241 39 9 chrX 85814268 85815578 -76784352 + L1PA14 LINE L1 3999 5426 -2158 1799 184 83 18 chrX 85815578 85816096 -76783834 + MLT2A2 LTR ERVL 1 546 -8 6631 188 31 3 chrX 85816099 85817554 -76782376 + L1PA14 LINE L1 5421 6950 -649 351 0 0 0 chrX 85817554 85817593 -76782337 + (TAA)n Simple_repeat Simple_repeat 1 39 0 6631 188 31 3 chrX 85817593 85818261 -76781669 + L1PA14 LINE L1 6950 7598 -1 33 0 0 0 chrX 85819048 85819081 -76780849 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 85819329 85819350 -76780580 + AT_rich Low_complexity Low_complexity 1 21 0 2284 77 0 32 chrX 85819604 85819917 -76780013 - AluY SINE Alu -8 303 1 457 321 56 34 chrX 85820808 85821132 -76778798 + L1MCb LINE L1 41 371 -5674 1701 222 32 21 chrX 85821145 85821822 -76778108 + L1M4 LINE L1 4880 5566 -618 1520 237 133 7 chrX 85821815 85822364 -76777566 + L1MC3 LINE L1 5376 5993 -2049 * 1082 198 90 19 chrX 85822377 85822645 -76777285 - MLT1C LTR MaLR -153 314 28 3153 222 54 20 chrX 85822670 85823518 -76776412 + L1MC3 LINE L1 6785 7661 -124 608 159 18 9 chrX 85823518 85823631 -76776299 - MER57A LTR ERV1 -289 114 1 1385 153 7 64 chrX 85823631 85823913 -76776017 - MER57A-int LTR ERV1 0 7537 7272 638 163 24 8 chrX 85823913 85824036 -76775894 - LTR54B LTR ERV1 -371 127 3 4802 85 12 0 chrX 85824036 85824686 -76775244 - MER57A-int LTR ERV1 -391 7146 6489 2853 90 10 0 chrX 85824697 85825087 -76774843 + L1PB1 LINE L1 5397 5790 -361 37 23 0 0 chrX 85825087 85825131 -76774799 + AT_rich Low_complexity Low_complexity 1 44 0 2288 96 27 32 chrX 85825157 85825345 -76774585 + L1PB1 LINE L1 5779 5966 -185 2431 72 0 0 chrX 85825345 85825649 -76774281 + AluY SINE Alu 1 304 -7 2288 96 27 32 chrX 85825649 85825835 -76774095 + L1PB1 LINE L1 5966 6151 0 14505 102 26 18 chrX 85825848 85827705 -76772225 - MER57A-int LTR ERV1 -1423 6114 4273 207 0 0 0 chrX 85827705 85827728 -76772202 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1794 157 0 0 chrX 85827735 85828003 -76771927 - AluSx SINE Alu -37 275 8 14505 102 26 18 chrX 85828003 85828343 -76771587 - MER57A-int LTR ERV1 -3269 4268 3892 6706 136 23 16 chrX 85828345 85829444 -76770486 - MER57A-int LTR ERV1 -3761 2185 1079 1725 137 4 11 chrX 85829428 85829690 -76770240 - MER57A-int LTR ERV1 -5326 620 361 * 5358 133 7 12 chrX 85829683 85830493 -76769437 - MER57A-int LTR ERV1 -6731 806 1 2399 148 10 2 chrX 85830493 85830893 -76769037 - MER57A LTR ERV1 0 403 1 23 33 0 0 chrX 85831597 85831627 -76768303 + AT_rich Low_complexity Low_complexity 1 30 0 3725 108 11 0 chrX 85831765 85832313 -76767617 + MER41A LTR ERV1 1 554 0 1174 195 0 9 chrX 85832360 85832591 -76767339 + L1PB4 LINE L1 5928 6156 0 5901 58 1 19 chrX 85833139 85833919 -76766011 + MER4E LTR ERV1 1 766 0 21 82 0 0 chrX 85834608 85834657 -76765273 + AT_rich Low_complexity Low_complexity 1 49 0 21 100 0 0 chrX 85836282 85836352 -76763578 + AT_rich Low_complexity Low_complexity 1 70 0 880 327 198 35 chrX 85836763 85837195 -76762735 + L2 LINE L2 1755 2115 -1198 360 0 0 0 chrX 85837195 85837235 -76762695 + (TG)n Simple_repeat Simple_repeat 1 40 0 880 327 198 35 chrX 85837235 85837447 -76762483 + L2 LINE L2 2115 2291 -1022 2145 69 3 20 chrX 85837447 85837750 -76762180 + L1MA1 LINE L1 6004 6301 -1 880 327 198 35 chrX 85837750 85838237 -76761693 + L2 LINE L2 2291 3068 -245 180 382 0 11 chrX 85838452 85838541 -76761389 + L2 LINE L2 3220 3307 -6 26 74 0 0 chrX 85840898 85840952 -76758978 + AT_rich Low_complexity Low_complexity 1 54 0 1822 178 3 0 chrX 85841577 85842048 -76757882 + AluJo SINE Alu 8 479 0 508 183 107 23 chrX 85842134 85842265 -76757665 + L1MC5 LINE L1 7305 7446 -515 1378 171 0 0 chrX 85842273 85842495 -76757435 - AluJo SINE Alu -7 305 84 510 193 40 88 chrX 85842522 85842630 -76757300 + L1MC5 LINE L1 7478 7590 -371 291 93 0 0 chrX 85842630 85842673 -76757257 + (TG)n Simple_repeat Simple_repeat 1 43 0 510 193 40 88 chrX 85842673 85842695 -76757235 + L1MC5 LINE L1 7590 7612 -349 2374 85 0 3 chrX 85842695 85843001 -76756929 + AluY SINE Alu 1 305 -6 510 193 40 88 chrX 85843001 85843118 -76756812 + L1MC5 LINE L1 7612 7714 -247 1311 227 39 3 chrX 85843121 85843429 -76756501 - L1MD2 LINE L1 -13 6346 6028 748 242 7 0 chrX 85843451 85843604 -76756326 - AluJb SINE Alu -22 290 137 2876 224 38 11 chrX 85843607 85844321 -76755609 - L1MD2 LINE L1 -323 6036 5304 15480 92 8 5 chrX 85844332 85847317 -76752613 - L1PA7 LINE L1 -3 6151 3148 15032 138 7 67 chrX 85847365 85850073 -76749857 + L1PA12 LINE L1 483 4270 -3314 2202 88 7 0 chrX 85850073 85850356 -76749574 + AluY SINE Alu 1 285 -26 15032 138 7 67 chrX 85850356 85850584 -76749346 + L1PA12 LINE L1 4270 4510 -3074 530 167 28 9 chrX 85850579 85850687 -76749243 - L1MD2 LINE L1 -850 5296 5187 * 11719 154 16 38 chrX 85900767 85902924 -76697006 - MER50-int LTR ERV1 -5094 2111 1 1822 185 0 22 chrX 85902926 85903288 -76696642 - MER50 LTR ERV1 -24 710 357 409 105 0 0 chrX 85903288 85903345 -76696585 + AluSp/q SINE Alu 181 237 -76 1331 81 34 64 chrX 85903346 85903686 -76696244 + MER4A-int LTR ERV1 764 1149 -5609 372 119 0 0 chrX 85903686 85903745 -76696185 + (TG)n Simple_repeat Simple_repeat 2 60 0 3925 106 48 13 chrX 85903756 85904472 -76695458 + MER4A-int LTR ERV1 1761 2501 -4097 542 183 122 0 chrX 85904466 85904581 -76695349 - LTR8 LTR ERV1 -434 257 129 * 3008 125 79 21 chrX 85904581 85905286 -76694644 + MER4A-int LTR ERV1 2840 3677 -2921 14942 117 51 10 chrX 85905289 85907778 -76692152 + MER4A-int LTR ERV1 3837 6428 -170 2187 115 7 0 chrX 85908061 85908365 -76691565 - AluSq SINE Alu -2 311 6 1072 160 11 5 chrX 85909928 85910116 -76689814 + MER4A-int LTR ERV1 6405 6593 -5 480 177 21 10 chrX 85910127 85910223 -76689707 + MER4A LTR ERV1 1 97 -567 * 1591 176 3 27 chrX 85910220 85910578 -76689352 + MER4A LTR ERV1 257 664 0 897 212 42 19 chrX 85910578 85910910 -76689020 - L1M1 LINE L1 -2704 4861 2678 1112 300 61 28 chrX 85910978 85911597 -76688333 - L1MEc LINE L1 -3151 3064 2408 2045 128 3 0 chrX 85911597 85911887 -76688043 - AluY SINE Alu -20 291 1 1112 300 61 28 chrX 85911887 85912104 -76687826 - L1MEc LINE L1 -3807 2408 2200 861 292 95 23 chrX 85912274 85912884 -76687046 - L1MEc LINE L1 -4358 2038 1385 508 285 55 80 chrX 85913081 85913393 -76686537 - L1MEc LINE L1 -5090 1115 812 313 365 42 23 chrX 85913689 85913903 -76686027 - MIR SINE MIR -11 251 34 22 0 0 0 chrX 85914527 85914549 -76685381 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 85915696 85915717 -76684213 + AT_rich Low_complexity Low_complexity 1 21 0 696 293 106 24 chrX 85915773 85916319 -76683611 + HAL1 LINE L1 659 1249 -1258 3432 154 41 0 chrX 85916456 85917042 -76682888 - MER4B LTR ERV1 0 610 1 1615 160 15 15 chrX 85917042 85917310 -76682620 - MER4B-int LTR ERV1 0 6758 6491 * 6934 151 31 67 chrX 85917302 85918812 -76681118 - MER4B-int LTR ERV1 -181 6577 5122 3769 195 7 28 chrX 85918812 85919556 -76680374 - MER50 LTR ERV1 -6 728 1 1660 142 11 36 chrX 85919556 85920035 -76679895 - MER50-int LTR ERV1 -8 7197 4041 626 137 0 0 chrX 85920046 85920141 -76679789 - MER50-int LTR ERV1 -3212 3546 3452 7373 168 43 51 chrX 85920148 85921066 -76678864 - MER50-int LTR ERV1 -3431 3327 2403 2207 112 0 0 chrX 85921066 85921360 -76678570 + AluY SINE Alu 1 294 -17 7373 168 43 51 chrX 85921360 85921440 -76678490 - MER50-int LTR ERV1 -4355 2403 2324 2167 120 0 0 chrX 85921440 85921741 -76678189 - AluSg SINE Alu -9 301 1 7373 168 43 51 chrX 85921741 85922265 -76677665 - MER50-int LTR ERV1 -4434 2324 1797 2137 124 0 3 chrX 85922265 85922571 -76677359 - AluSg SINE Alu -5 305 1 7373 168 43 51 chrX 85922571 85924115 -76675815 - MER50-int LTR ERV1 -4961 1797 180 3307 146 48 2 chrX 85924203 85924744 -76675186 - MER4B LTR ERV1 0 610 45 689 134 23 227 chrX 85924744 85924985 -76674945 - MLT2A2 LTR ERVL 0 444 287 281 296 162 51 chrX 85925012 85925654 -76674276 + HAL1 LINE L1 1792 2504 -3 507 279 92 85 chrX 85926242 85926525 -76673405 + L2 LINE L2 3029 3313 0 184 264 75 0 chrX 85926590 85926643 -76673287 + MIR SINE MIR 85 141 -121 1567 223 76 49 chrX 85927031 85927256 -76672674 + MLT1D LTR MaLR 4 222 -283 186 71 0 0 chrX 85927256 85927284 -76672646 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1567 223 76 49 chrX 85927284 85927547 -76672383 + MLT1D LTR MaLR 222 505 0 25 0 0 0 chrX 85927922 85927947 -76671983 + AT_rich Low_complexity Low_complexity 1 25 0 216 388 72 26 chrX 85928183 85928572 -76671358 - L2 LINE L2 -642 2672 2266 1635 178 165 8 chrX 85928729 85929099 -76670831 - MSTA LTR MaLR 0 428 1 8314 161 8 56 chrX 85929099 85930035 -76669895 - MSTA-int LTR MaLR 0 1580 756 2668 29 0 3 chrX 85930035 85930347 -76669583 + AluY SINE Alu 1 311 0 8314 161 8 56 chrX 85930347 85931067 -76668863 - MSTA-int LTR MaLR -824 756 3 1774 168 146 8 chrX 85931070 85931446 -76668484 - MSTA LTR MaLR 0 428 1 1337 288 65 17 chrX 85931446 85931926 -76668004 - LTR40a LTR ERVL -16 503 1 912 286 73 21 chrX 85932091 85932731 -76667199 - L1ME LINE L1 -519 5643 4961 1544 292 69 51 chrX 85932873 85934593 -76665337 - L1ME LINE L1 -1987 4159 2409 1308 266 58 76 chrX 85934597 85935319 -76664611 + L1ME3A LINE L1 5462 6170 0 26 0 0 0 chrX 85935753 85935779 -76664151 + AT_rich Low_complexity Low_complexity 1 26 0 3178 141 41 23 chrX 85935874 85936436 -76663494 + MER4B LTR ERV1 3 574 -36 22 70 0 0 chrX 85937046 85937089 -76662841 + AT_rich Low_complexity Low_complexity 1 43 0 250 381 15 8 chrX 85937152 85937286 -76662644 - MIR SINE MIR -47 215 81 2458 138 58 22 chrX 85937521 85937970 -76661960 - MER4C LTR ERV1 0 465 1 2411 75 0 3 chrX 85938281 85938589 -76661341 + AluY SINE Alu 1 307 -4 31 76 0 0 chrX 85938742 85938808 -76661122 + AT_rich Low_complexity Low_complexity 1 66 0 23 33 0 0 chrX 85939279 85939309 -76660621 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 85939552 85939574 -76660356 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chrX 85940042 85940073 -76659857 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chrX 85940223 85940260 -76659670 + AT_rich Low_complexity Low_complexity 1 37 0 1458 277 123 11 chrX 85940472 85941035 -76658895 - MLT1E2 LTR MaLR 0 626 1 1877 171 3 0 chrX 85941467 85941776 -76658154 + AluSx SINE Alu 1 310 -2 1363 235 17 32 chrX 85942146 85942295 -76657635 + L1MB3 LINE L1 3392 3542 -2604 2014 152 91 15 chrX 85942295 85942691 -76657239 - MSTA LTR MaLR 0 428 3 7950 163 34 42 chrX 85942693 85943773 -76656157 - MSTA-int LTR MaLR 0 1580 516 213 39 0 0 chrX 85943773 85943799 -76656131 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 7950 163 34 42 chrX 85943799 85944309 -76655621 - MSTA-int LTR MaLR -1064 516 3 1812 149 79 82 chrX 85944311 85944549 -76655381 - MSTA LTR MaLR 0 428 190 2129 101 50 3 chrX 85944549 85944846 -76655084 - AluY SINE Alu 0 311 1 1812 149 79 82 chrX 85944846 85945036 -76654894 - MSTA LTR MaLR -238 190 1 1363 235 17 32 chrX 85945036 85945344 -76654586 + L1MB3 LINE L1 3544 3848 -2298 8487 216 15 2 chrX 85945354 85946910 -76653020 + L1PA13 LINE L1 9 1585 -5996 3616 210 15 17 chrX 85946913 85948050 -76651880 + L1PA13 LINE L1 2405 3560 -4024 * 9882 174 18 25 chrX 85948038 85951006 -76648924 + L1PA13 LINE L1 4648 7595 -6 4135 230 52 30 chrX 85951032 85951250 -76648680 + L1MB3 LINE L1 3876 4088 -2095 1718 225 10 20 chrX 85951250 85951650 -76648280 - MSTD LTR MaLR 0 396 1 4135 230 52 30 chrX 85951650 85951842 -76648088 + L1MB3 LINE L1 4088 4274 -1909 234 0 0 0 chrX 85951842 85951868 -76648062 + (CA)n Simple_repeat Simple_repeat 2 27 0 4135 230 52 30 chrX 85951868 85952832 -76647098 + L1MB3 LINE L1 4274 5216 -967 1073 248 39 19 chrX 85952832 85953195 -76646735 - MLT1A2 LTR MaLR -4 370 1 4135 230 52 30 chrX 85953195 85954091 -76645839 + L1MB3 LINE L1 5216 6183 0 180 329 13 13 chrX 85955199 85955275 -76644655 + MIR SINE MIR 187 262 0 572 383 82 21 chrX 85955728 85956557 -76643373 - L2 LINE L2 -213 3059 2180 394 299 57 53 chrX 85956655 85956956 -76642974 + L1M4 LINE L1 3684 3985 -2161 614 213 164 7 chrX 85956988 85957195 -76642735 - MER66A LTR ERV1 -257 341 97 1512 179 51 0 chrX 85957263 85957536 -76642394 - MER66A-int LTR ERV1 0 6676 6390 324 172 16 0 chrX 85957525 85957589 -76642341 - MER66A-int LTR ERV1 -1735 4941 4877 * 7545 196 107 86 chrX 85957591 85960109 -76639821 - MER66A-int LTR ERV1 -1758 4918 2348 13155 143 16 11 chrX 85960139 85963229 -76636701 - L1PA10 LINE L1 -3 6165 3044 10099 193 49 29 chrX 85963251 85965369 -76634561 - MER66A-int LTR ERV1 -4516 2160 1 1334 202 48 94 chrX 85965369 85965803 -76634127 - MER66A LTR ERV1 0 478 97 360 287 33 16 chrX 85965905 85966027 -76633903 + L1MC4 LINE L1 6580 6703 -1339 216 278 0 14 chrX 85966027 85966063 -76633867 + (TA)n Simple_repeat Simple_repeat 1 36 -35 1249 209 62 38 chrX 85966063 85966402 -76633528 + MER7A DNA MER2_type 1 345 -1 216 278 0 14 chrX 85966402 85966437 -76633493 + (TA)n Simple_repeat Simple_repeat 36 71 0 1179 176 0 39 chrX 85966517 85966750 -76633180 + Tigger5 DNA MER2_type 2085 2308 -15 192 40 0 0 chrX 85966761 85966786 -76633144 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 0 0 chrX 85966787 85966845 -76633085 + (TATG)n Simple_repeat Simple_repeat 3 60 0 1951 119 0 17 chrX 85967093 85967431 -76632499 + AluY SINE Alu 1 311 0 29 0 0 0 chrX 85967469 85967498 -76632432 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrX 85967727 85967751 -76632179 + AT_rich Low_complexity Low_complexity 1 24 0 651 259 95 69 chrX 85967859 85968553 -76631377 + L1MC/D LINE L1 3997 4708 -1438 459 215 117 78 chrX 85968597 85968802 -76631128 - L2 LINE L2 0 3313 3101 321 245 1 95 chrX 85969138 85969261 -76630669 + L1MC/D LINE L1 5476 5589 -540 591 211 37 0 chrX 85969441 85969550 -76630380 - FLAM_A SINE Alu -18 115 3 2827 297 128 38 chrX 85969735 85971286 -76628644 + L2 LINE L2 1171 2861 -453 529 290 26 59 chrX 85971345 85971617 -76628313 + L2 LINE L2 3051 3313 0 3464 215 96 17 chrX 85972762 85973122 -76626808 - L1MB7 LINE L1 -8 6176 5846 1788 198 40 0 chrX 85973122 85973471 -76626459 + MLT1A1 LTR MaLR 1 363 -2 3464 215 96 17 chrX 85973471 85974191 -76625739 - L1MB7 LINE L1 -338 5846 5028 435 19 0 0 chrX 85975199 85975251 -76624679 + (CA)n Simple_repeat Simple_repeat 1 52 0 378 315 129 18 chrX 85975673 85976013 -76623917 - L1ME4a LINE L1 -14 6107 5730 21 57 0 0 chrX 85976781 85976816 -76623114 + AT_rich Low_complexity Low_complexity 1 35 0 2201 90 0 0 chrX 85979123 85979411 -76620519 - AluY SINE Alu -23 288 1 1362 207 82 4 chrX 85979460 85979740 -76620190 + AluJb SINE Alu 1 302 -10 30 27 0 0 chrX 85979740 85979777 -76620153 + AT_rich Low_complexity Low_complexity 1 37 0 615 12 0 0 chrX 85979805 85979885 -76620045 + AluYa5/8 SINE Alu 231 310 -1 22 56 0 0 chrX 85981239 85981275 -76618655 + AT_rich Low_complexity Low_complexity 1 36 0 1590 261 76 32 chrX 85981576 85982144 -76617786 + MLT1E LTR MaLR 1 593 0 13461 170 25 47 chrX 85982300 85982504 -76617426 - L1PA13 LINE L1 0 6163 5956 2072 128 0 0 chrX 85982504 85982793 -76617137 - AluSg SINE Alu -21 289 1 13461 170 25 47 chrX 85982793 85984261 -76615669 - L1PA13 LINE L1 -207 5956 4458 2534 33 13 0 chrX 85984261 85984563 -76615367 - AluY SINE Alu 0 311 6 13461 170 25 47 chrX 85984563 85984657 -76615273 - L1PA13 LINE L1 -1705 4458 4363 2296 96 0 6 chrX 85984657 85984969 -76614961 - AluSx SINE Alu -2 310 1 13461 170 25 47 chrX 85984969 85986244 -76613686 - L1PA13 LINE L1 -1800 4363 3062 1832 180 0 0 chrX 85986244 85986555 -76613375 - AluSx SINE Alu -1 311 1 13461 170 25 47 chrX 85986555 85986575 -76613355 - L1PA13 LINE L1 -3101 3062 3043 1773 182 3 0 chrX 85986575 85986883 -76613047 - AluSx SINE Alu -3 309 1 13461 170 25 47 chrX 85986883 85987720 -76612210 - L1PA13 LINE L1 -3120 3043 2341 204 111 0 0 chrX 85987824 85987860 -76612070 + (A)n Simple_repeat Simple_repeat 1 36 0 774 297 36 5 chrX 85988684 85988906 -76611024 + MER69 DNA AcHobo 304 532 -1994 449 200 30 20 chrX 85988912 85989012 -76610918 + MER69 DNA AcHobo 801 901 -1625 1382 207 121 12 chrX 85989022 85989519 -76610411 + MER69 DNA AcHobo 1708 2258 -268 4807 181 16 12 chrX 85989568 85989998 -76609932 - L1PA16 LINE L1 -8 6158 5731 5869 61 30 13 chrX 85989998 85990765 -76609165 - LTR17 LTR ERV1 0 780 1 4807 181 16 12 chrX 85990765 85991293 -76608637 - L1PA16 LINE L1 -435 5731 5199 421 217 19 83 chrX 85991293 85991450 -76608480 + MER69 DNA AcHobo 2371 2517 -9 194 366 78 35 chrX 85991471 85991613 -76608317 + MIR3 SINE MIR 33 180 -28 2192 188 49 79 chrX 85991619 85992275 -76607655 + MER92B LTR ERV1 1 636 0 395 289 157 38 chrX 85993652 85993811 -76606119 + MER5A DNA MER1_type 11 188 -1 1049 302 132 21 chrX 85993928 85994110 -76605820 - L2 LINE L2 -4 3309 3149 1549 219 7 47 chrX 85994110 85994516 -76605414 + MLT1B LTR MaLR 1 390 0 1049 302 132 21 chrX 85994516 85994945 -76604985 - L2 LINE L2 -164 3149 2621 472 110 14 0 chrX 85995091 85995164 -76604766 - MADE1 DNA Mariner -1 79 6 310 274 176 19 chrX 85995184 85995714 -76604216 - L1M4 LINE L1 -901 5245 4633 2356 84 0 7 chrX 85995716 85996026 -76603904 + AluY SINE Alu 1 308 -3 1609 142 76 44 chrX 85996076 85996420 -76603510 - THE1C LTR MaLR -20 355 1 345 304 104 55 chrX 85996715 85996916 -76603014 - MIR SINE MIR -3 259 49 21 36 0 0 chrX 85997025 85997053 -76602877 + AT_rich Low_complexity Low_complexity 1 28 0 504 0 0 0 chrX 85998087 85998143 -76601787 + (TA)n Simple_repeat Simple_repeat 2 57 0 1442 238 85 25 chrX 85998190 85998633 -76601297 - MLT2B1 LTR ERVL -40 461 4 16474 190 32 20 chrX 85998640 86001845 -76598085 - ERVL-B1 LTR ERVL -11 5753 2510 953 238 32 69 chrX 86001849 86002126 -76597804 - MLT2B1 LTR ERVL -253 267 1 408 273 187 16 chrX 86002322 86002509 -76597421 - MIR SINE MIR -5 257 39 315 248 134 13 chrX 86003122 86003271 -76596659 - MER58C DNA MER1_type -1 214 48 25 75 0 0 chrX 86003694 86003747 -76596183 + AT_rich Low_complexity Low_complexity 1 53 0 671 119 0 0 chrX 86003866 86003967 -76595963 - LTR12 LTR ERV1 -133 581 481 378 224 42 0 chrX 86003968 86004074 -76595856 - LTR30 LTR ERV1 -79 677 544 660 218 8 77 chrX 86004074 86004308 -76595622 - LTR12 LTR ERV1 -444 270 53 235 269 0 0 chrX 86004308 86004360 -76595570 - LTR30 LTR ERV1 -670 52 1 22 56 0 0 chrX 86004922 86004958 -76594972 + AT_rich Low_complexity Low_complexity 1 36 0 192 179 0 0 chrX 86004995 86005034 -76594896 + (TAA)n Simple_repeat Simple_repeat 1 39 0 331 224 67 101 chrX 86005172 86005351 -76594579 + L1M4 LINE L1 2380 2552 -3594 335 342 97 51 chrX 86005398 86005635 -76594295 + L1M4 LINE L1 -260 4294967283 -6293 265 149 21 0 chrX 86005984 86006031 -76593899 + L1M4 LINE L1 619 666 -5718 2506 234 68 40 chrX 86006032 86006192 -76593738 + L1M4 LINE L1 777 931 -5372 198 0 0 0 chrX 86006192 86006214 -76593716 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2506 234 68 40 chrX 86006214 86007009 -76592921 + L1M4 LINE L1 931 1786 -4517 1202 256 36 31 chrX 86007009 86007362 -76592568 - MSTD LTR MaLR 0 396 44 405 0 0 0 chrX 86007362 86007407 -76592523 + (CA)n Simple_repeat Simple_repeat 2 46 0 1202 256 36 31 chrX 86007407 86007420 -76592510 - MSTD LTR MaLR -352 44 33 4773 208 44 12 chrX 86007420 86008489 -76591441 + L1MC3 LINE L1 6573 7675 -110 2090 115 0 26 chrX 86008493 86008797 -76591133 + AluSg SINE Alu 1 296 -14 205 184 0 0 chrX 86009161 86009199 -76590731 + (CATA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chrX 86009415 86009453 -76590477 + AT_rich Low_complexity Low_complexity 1 38 0 715 108 0 0 chrX 86009460 86009562 -76590368 - LTR12 LTR ERV1 -132 582 481 314 293 10 0 chrX 86009563 86009662 -76590268 - LTR30 LTR ERV1 -79 643 544 652 168 153 31 chrX 86009665 86009861 -76590069 - LTR12 LTR ERV1 -440 274 55 961 148 6 22 chrX 86009862 86010044 -76589886 - LTR12 LTR ERV1 -483 231 53 236 250 0 0 chrX 86010044 86010096 -76589834 - LTR30 LTR ERV1 -670 52 1 192 77 0 0 chrX 86011821 86011847 -76588083 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 21 57 0 0 chrX 86012071 86012106 -76587824 + AT_rich Low_complexity Low_complexity 1 35 0 537 241 103 0 chrX 86012148 86012293 -76587637 - MLT1A1 LTR MaLR 0 624 465 2226 86 3 16 chrX 86012577 86012881 -76587049 + AluY SINE Alu 12 311 0 1036 156 28 104 chrX 86012881 86013131 -76586799 - LOR1b LTR ERV1 -203 258 41 32 43 0 0 chrX 86013463 86013509 -76586421 + AT_rich Low_complexity Low_complexity 1 46 0 228 283 0 0 chrX 86013678 86013731 -76586199 - MIR SINE MIR -187 75 23 2209 113 3 6 chrX 86013731 86014042 -76585888 - AluSg SINE Alu 0 310 1 1592 199 35 11 chrX 86014138 86014485 -76585445 - MLT1A1 LTR MaLR -10 355 1 1861 109 0 0 chrX 86014804 86015052 -76584878 - AluSc SINE Alu -23 286 39 1328 291 85 6 chrX 86015571 86016041 -76583889 + L2 LINE L2 1780 2286 -1028 255 355 57 28 chrX 86016040 86016181 -76583749 + L2 LINE L2 3168 3312 -1 * 694 211 75 12 chrX 86017243 86017404 -76582526 + MER5B DNA MER1_type 2 172 -6 322 256 33 11 chrX 86017799 86017889 -76582041 + MER5A DNA MER1_type 96 187 -2 1815 207 56 25 chrX 86017966 86018410 -76581520 + LOR1b LTR ERV1 1 458 -3 21 36 0 0 chrX 86018873 86018901 -76581029 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 86019027 86019048 -76580882 + AT_rich Low_complexity Low_complexity 1 21 0 287 321 38 46 chrX 86019057 86019297 -76580633 - L1MC/D LINE L1 -2019 5789 5552 1768 324 62 15 chrX 86019442 86020220 -76579710 - ERVL LTR ERVL -1533 4231 3418 625 331 65 20 chrX 86020589 86020837 -76579093 - LTR33 LTR ERVL -237 284 26 329 204 49 21 chrX 86020852 86020994 -76578936 + (TA)n Simple_repeat Simple_repeat 1 146 0 739 319 61 55 chrX 86021005 86021698 -76578232 - L1MC/D LINE L1 -1430 4716 4020 1321 219 50 14 chrX 86021741 86022019 -76577911 + AluJo SINE Alu 1 288 -24 2211 261 16 8 chrX 86022403 86023111 -76576819 - L1MC/D LINE L1 -2402 3744 3032 417 338 76 60 chrX 86023174 86023952 -76575978 + L1M4 LINE L1 3604 4393 -1753 10393 175 18 65 chrX 86023964 86026042 -76573888 + L1PA15-16 LINE L1 5 1986 -4863 259 100 0 0 chrX 86026127 86026167 -76573763 - L1PA8 LINE L1 -5 6167 6128 6915 230 29 29 chrX 86026269 86028830 -76571100 - L1MA9 LINE L1 -372 5940 3393 221 252 0 8 chrX 86028853 86028984 -76570946 + (TA)n Simple_repeat Simple_repeat 2 131 0 280 314 21 0 chrX 86029010 86029150 -76570780 + (TA)n Simple_repeat Simple_repeat 2 144 0 451 252 125 22 chrX 86029156 86029525 -76570405 - L1MC/D LINE L1 -3506 2640 2234 255 103 0 0 chrX 86029571 86029610 -76570320 + (CA)n Simple_repeat Simple_repeat 2 40 0 1143 221 42 26 chrX 86029621 86029928 -76570002 - L1MD1 LINE L1 -159 6083 5772 16864 194 40 27 chrX 86029936 86036782 -76563148 - L1M1 LINE L1 -743 6822 17 260 350 36 29 chrX 86037013 86037153 -76562777 + L2 LINE L2 3101 3241 -31 22 35 0 0 chrX 86037904 86037933 -76561997 + AT_rich Low_complexity Low_complexity 1 29 0 2240 96 0 39 chrX 86038081 86038393 -76561537 + AluY SINE Alu 1 300 -11 2004 134 0 10 chrX 86038446 86038736 -76561194 + AluSx SINE Alu 1 287 -25 1573 209 0 20 chrX 86038852 86039153 -76560777 + AluJo SINE Alu 1 295 -17 1652 171 0 4 chrX 86039495 86039770 -76560160 - L1PB3 LINE L1 -2 6152 5879 2023 205 24 7 chrX 86039771 86040186 -76559744 - MER50 LTR ERV1 -23 711 290 1467 138 5 9 chrX 86040186 86040410 -76559520 - MER4A LTR ERV1 0 664 442 10069 123 43 23 chrX 86040410 86042254 -76557676 - MER4A-int LTR ERV1 -874 5724 3844 30508 107 8 24 chrX 86042254 86048044 -76551886 + L1PA7 LINE L1 1 5778 -698 2387 83 0 3 chrX 86048044 86048345 -76551585 + AluSc SINE Alu 4 303 -6 30508 107 8 24 chrX 86048345 86049034 -76550896 + L1PA7 LINE L1 5778 6476 0 1418 174 45 34 chrX 86049044 86049423 -76550507 - MER4A-int LTR ERV1 -2912 3686 3304 1563 160 70 3 chrX 86049451 86049839 -76550091 - MER4A-int LTR ERV1 -3448 3150 2737 1197 194 5 0 chrX 86049839 86050055 -76549875 + LTR8 LTR ERV1 1 217 -474 11413 118 118 45 chrX 86050061 86052395 -76547535 - MER4A-int LTR ERV1 -4095 2503 1 1932 128 171 20 chrX 86052398 86052749 -76547181 - MER4A LTR ERV1 0 664 261 640 131 0 10 chrX 86052749 86052848 -76547082 - MER4A LTR ERV1 -566 98 1 1657 157 29 0 chrX 86052849 86053129 -76546801 - MER50 LTR ERV1 -446 288 1 1461 121 8 15 chrX 86053129 86053394 -76546536 - MER50-int LTR ERV1 -8 7197 6849 6920 114 29 42 chrX 86053394 86054549 -76545381 - MER50-int LTR ERV1 -1007 6198 5059 330 115 37 7 chrX 86054539 86054607 -76545323 - MER50-int LTR ERV1 -1499 4962 4381 * 1784 142 17 10 chrX 86054607 86054902 -76545028 + THE1A LTR MaLR 1 297 -58 1718 101 0 0 chrX 86054908 86055145 -76544785 + THE1A-int LTR MaLR 206 442 -1138 6707 206 33 19 chrX 86055151 86056629 -76543301 - MER50-int LTR ERV1 -2612 4593 3095 271 167 65 29 chrX 86256635 86256773 -76343157 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 400 265 17 2 chrX 86257088 86257210 -76342720 - MER5A DNA MER1_type -51 138 3 431 225 0 17 chrX 86257394 86257514 -76342416 + L1M2 LINE L1 5402 5519 -778 217 184 20 0 chrX 86257809 86257858 -76342072 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2647 228 36 46 chrX 86258009 86259080 -76340850 + L1MA6 LINE L1 5289 6300 0 1200 196 34 44 chrX 86259888 86260271 -76339659 + Tigger2 DNA MER2_type 2 380 -2338 1517 222 13 3 chrX 86260277 86260579 -76339351 + AluJb SINE Alu 7 311 -1 1572 206 16 32 chrX 86260638 86261011 -76338919 + Tigger2 DNA MER2_type 365 731 -1987 482 231 0 60 chrX 86261032 86261149 -76338781 - FRAM SINE Alu -19 157 48 5531 209 38 33 chrX 86261333 86262119 -76337811 + L1P LINE L1 2059 2857 -3289 2044 132 3 0 chrX 86262119 86262407 -76337523 + AluSc SINE Alu 1 289 -20 5531 209 38 33 chrX 86262407 86263153 -76336777 + L1P LINE L1 2857 3598 -2548 6596 80 3 1 chrX 86263168 86264880 -76335050 + L1PA7 LINE L1 4440 6151 -3 21 0 0 0 chrX 86264882 86264903 -76335027 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chrX 86265712 86265746 -76334184 + AT_rich Low_complexity Low_complexity 1 34 0 617 215 7 14 chrX 86266211 86266379 -76333551 - L1MB3 LINE L1 -88 6095 5930 277 244 13 0 chrX 86267310 86267388 -76332542 + MER116 DNA Mariner 1 79 -1 817 275 83 33 chrX 86267585 86267951 -76331979 + L1M4 LINE L1 2711 3120 -3026 1083 279 49 14 chrX 86267951 86268378 -76331552 + LTR47B LTR ERVL 1 442 -1 817 275 83 33 chrX 86268378 86268611 -76331319 + L1M4 LINE L1 3120 3340 -2806 500 241 76 19 chrX 86268686 86268844 -76331086 + MER58A DNA MER1_type 42 208 -16 663 227 69 66 chrX 86268861 86269037 -76330893 + L1M4 LINE L1 3385 3564 -2582 1935 162 0 0 chrX 86269037 86269334 -76330596 + AluSc SINE Alu 2 298 -11 663 227 69 66 chrX 86269334 86269474 -76330456 + L1M4 LINE L1 3564 3702 -2444 370 291 102 16 chrX 86270139 86270266 -76329664 + L2 LINE L2 3162 3299 -14 21 0 0 0 chrX 86272453 86272474 -76327456 + AT_rich Low_complexity Low_complexity 1 21 0 301 147 80 27 chrX 86272587 86272662 -76327268 + L1M3 LINE L1 5685 5763 -420 2181 124 58 22 chrX 86272664 86273028 -76326902 + MER51B LTR ERV1 1 377 0 1133 81 5 48 chrX 86273028 86273214 -76326716 + MER51B-int LTR ERV1 1 178 -7638 2808 83 21 3 chrX 86273214 86273729 -76326201 - LTR10C LTR ERV1 0 591 1 3621 288 46 42 chrX 86273979 86275676 -76324254 - Harlequin LTR ERV1 -585 6064 4362 3339 113 24 13 chrX 86275852 86276473 -76323457 - Harlequin LTR ERV1 -4350 2546 1919 320 317 4 8 chrX 86276483 86276625 -76323305 + CT-rich Low_complexity Low_complexity 1 239 0 2889 178 45 13 chrX 86277649 86278249 -76321681 + MER51B-int LTR ERV1 176 794 -7022 1070 157 5 0 chrX 86278254 86278439 -76321491 + MER51B-int LTR ERV1 1038 1223 -6593 1035 152 25 0 chrX 86278442 86278640 -76321290 + MER51B-int LTR ERV1 936 1138 -6982 607 166 50 68 chrX 86278697 86278896 -76321034 + MER4A LTR ERV1 281 534 -130 7002 126 77 15 chrX 86278897 86279586 -76320344 + MER51B-int LTR ERV1 1807 2452 -5364 1913 183 93 30 chrX 86279586 86280046 -76319884 - LTR2B LTR ERV1 -1 489 1 7002 126 77 15 chrX 86280046 86280772 -76319158 + MER51B-int LTR ERV1 2452 3310 -4506 1640 150 73 34 chrX 86280775 86281212 -76318718 + MER51B-int LTR ERV1 1487 3172 -2774 1704 131 20 9 chrX 86281224 86281621 -76318309 + MER51B-int LTR ERV1 2217 2662 -2555 * 6935 150 64 34 chrX 86281598 86281748 -76318182 + MER51B-int LTR ERV1 5407 5551 -2265 1591 144 89 0 chrX 86281748 86282018 -76317912 + AluSg1 SINE Alu 1 294 -15 6935 150 64 34 chrX 86282018 86282934 -76316996 + MER51B-int LTR ERV1 5551 6438 -1378 2282 89 0 23 chrX 86282934 86283237 -76316693 + AluY SINE Alu 5 300 -11 6935 150 64 34 chrX 86283237 86284300 -76315630 + MER51B-int LTR ERV1 6438 7814 -2 2048 110 119 3 chrX 86284304 86284640 -76315290 + MER51B LTR ERV1 1 375 -2 911 199 127 4 chrX 86284646 86284913 -76315017 + L1MB2 LINE L1 5766 6065 -106 * 37091 68 2 2 chrX 86284909 86290817 -76309113 + L1PA5 LINE L1 254 6165 0 21 0 0 0 chrX 86291901 86291922 -76308008 + AT_rich Low_complexity Low_complexity 1 21 0 1072 263 68 16 chrX 86292124 86292884 -76307046 + L1MB5 LINE L1 4817 5648 -686 1932 147 0 7 chrX 86292950 86293272 -76306658 - AluSg SINE Alu 0 310 1 405 213 103 13 chrX 86293274 86293429 -76306501 + L1MB5 LINE L1 5662 5830 -344 765 182 98 0 chrX 86293429 86293572 -76306358 + FRAM SINE Alu 5 161 -5 1414 181 0 40 chrX 86293576 86293880 -76306050 + AluSg SINE Alu 5 296 -14 4668 190 35 8 chrX 86293882 86294863 -76305067 + L1MC1 LINE L1 5326 6332 -1 1000 224 39 39 chrX 86294879 86295214 -76304716 + L1MB5 LINE L1 5840 6174 0 1387 221 62 25 chrX 86295403 86295886 -76304044 - L1MB4 LINE L1 -1 6179 5679 581 231 49 0 chrX 86295900 86296043 -76303887 - Tigger2 DNA MER2_type -3 2715 2566 1498 183 61 4 chrX 86296045 86296307 -76303623 - AluSx SINE Alu -15 297 21 1843 121 4 8 chrX 86296392 86296656 -76303274 + AluSg SINE Alu 35 297 -13 1819 181 17 3 chrX 86297040 86297338 -76302592 + AluSx SINE Alu 9 310 -2 1367 204 8 8 chrX 86297338 86297583 -76302347 + AluJb SINE Alu 38 282 -30 588 98 43 11 chrX 86298516 86298608 -76301322 + THE1B LTR MaLR 257 351 -13 890 302 13 10 chrX 86298688 86298999 -76300931 + MLT1J2 LTR MaLR 15 326 -124 10530 144 23 30 chrX 86300717 86303566 -76296364 + L1P3 LINE L1 10 2906 -3555 2789 288 54 94 chrX 86303685 86303843 -76296087 - L1M2 LINE L1 -5119 1730 1567 243 0 0 0 chrX 86303843 86303870 -76296060 + (CA)n Simple_repeat Simple_repeat 2 28 0 2789 288 54 94 chrX 86303870 86305513 -76294417 - L1M2 LINE L1 -5282 1567 1 272 26 0 26 chrX 86305992 86306030 -76293900 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 375 277 40 0 chrX 86306532 86306633 -76293297 - MIR SINE MIR -70 192 88 449 238 0 0 chrX 86309444 86309549 -76290381 - L1MA5 LINE L1 -404 5896 5792 425 155 0 0 chrX 86309549 86309630 -76290300 + L1MA7 LINE L1 6189 6272 -19 28 29 0 0 chrX 86309638 86309673 -76290257 + AT_rich Low_complexity Low_complexity 1 35 0 304 282 32 34 chrX 86309673 86309791 -76290139 - MER5A DNA MER1_type -50 128 21 2154 101 0 3 chrX 86309837 86310159 -76289771 - AluSc SINE Alu 0 309 1 242 131 16 66 chrX 86310328 86310389 -76289541 + CT-rich Low_complexity Low_complexity 1 58 0 551 167 0 12 chrX 86310484 86310650 -76289280 + CT-rich Low_complexity Low_complexity 1 163 0 763 265 25 0 chrX 86310658 86310862 -76289068 - MER58A DNA MER1_type -12 212 4 287 304 78 17 chrX 86310962 86311077 -76288853 + FLAM_A SINE Alu 2 123 -10 2124 117 4 0 chrX 86311658 86311964 -76287966 + AluSq SINE Alu 1 307 0 349 325 42 0 chrX 86312800 86312920 -76287010 - L2 LINE L2 -3 3310 3186 323 387 43 18 chrX 86312986 86313314 -76286616 - L2 LINE L2 -1172 2142 1807 1555 234 47 20 chrX 86313743 86314188 -76285742 + MSTB2 LTR MaLR 1 457 0 277 205 55 16 chrX 86314654 86314781 -76285149 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 35 0 0 chrX 86315708 86315737 -76284193 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chrX 86315773 86315810 -76284120 + AT_rich Low_complexity Low_complexity 1 37 0 2549 111 22 3 chrX 86316229 86316597 -76283333 + THE1C LTR MaLR 1 375 0 3057 162 62 29 chrX 86317309 86317937 -76281993 - MER39B LTR ERV1 -4 649 1 373 267 163 12 chrX 86318092 86318264 -76281666 + MIR SINE MIR 58 255 -7 863 171 46 5 chrX 86318423 86318640 -76281290 - L1MA7 LINE L1 -11 6280 6055 239 262 0 0 chrX 86318766 86318827 -76281103 + MIR SINE MIR 199 259 -3 1517 143 57 0 chrX 86318891 86319156 -76280774 + MER7A DNA MER2_type 1 278 -68 499 174 54 0 chrX 86319248 86319340 -76280590 + MER7A DNA MER2_type 240 336 -1 25348 133 20 22 chrX 86319884 86326257 -76273673 - L1PA7 LINE L1 -1 6468 119 300 151 110 0 chrX 86326363 86326436 -76273494 - L1M4 LINE L1 -825 5321 5241 267 324 43 22 chrX 86327320 86327459 -76272471 - MIR3 SINE MIR -14 194 53 31 26 0 0 chrX 86328083 86328121 -76271809 + AT_rich Low_complexity Low_complexity 1 38 0 351 282 6 61 chrX 86329327 86329490 -76270440 - MER20 DNA MER1_type -64 155 2 190 268 0 54 chrX 86330130 86330186 -76269744 - MIR SINE MIR -140 122 70 1307 92 10 10 chrX 86331313 86331519 -76268411 - L1PA8A LINE L1 -223 5908 5703 20952 56 50 3 chrX 86331526 86334432 -76265498 + L1P LINE L1 8 3050 -3096 12357 155 20 19 chrX 86334556 86336863 -76263067 - L1P LINE L1 -3826 2320 11 21 36 0 0 chrX 86337250 86337278 -76262652 + AT_rich Low_complexity Low_complexity 1 28 0 642 236 10 51 chrX 86338294 86338489 -76261441 + MER5A DNA MER1_type 1 187 -2 753 224 49 2 chrX 86338761 86338955 -76260975 - MER20 DNA MER1_type 0 219 1 1259 254 17 17 chrX 86339294 86339653 -76260277 + MLT1A1 LTR MaLR 1 359 -6 292 245 167 52 chrX 86339700 86339892 -76260038 + MER41C LTR ERV1 1 214 -340 184 309 36 0 chrX 86341480 86341535 -76258395 + L2 LINE L2 3194 3250 -22 238 270 87 8 chrX 86341674 86341800 -76258130 + L1ME4a LINE L1 5967 6102 -19 30 0 0 0 chrX 86342059 86342089 -76257841 + AT_rich Low_complexity Low_complexity 1 30 0 610 276 109 0 chrX 86342118 86342310 -76257620 + MER20 DNA MER1_type 1 213 -6 9743 177 26 8 chrX 86342834 86344716 -76255214 + L1P LINE L1 1322 3248 -2898 8482 47 2 0 chrX 86344716 86345680 -76254250 - LTR5 LTR ERVK -3 966 1 9743 177 26 8 chrX 86345680 86345975 -76253955 + L1P LINE L1 3248 3536 -2610 207 0 0 0 chrX 86345987 86346010 -76253920 + (CTATT)n Simple_repeat Simple_repeat 4 26 0 1726 126 11 0 chrX 86346010 86346288 -76253642 + L1PB1 LINE L1 5866 6146 -5 1206 218 11 79 chrX 86346877 86347244 -76252686 - MLT1E2 LTR MaLR 0 626 285 657 100 0 0 chrX 86347663 86347763 -76252167 + L1MA1 LINE L1 6203 6302 0 384 22 0 0 chrX 86348076 86348121 -76251809 + (CA)n Simple_repeat Simple_repeat 1 45 0 211 203 89 51 chrX 86348121 86348191 -76251739 + MIR3 SINE MIR 99 174 -34 774 271 75 18 chrX 86348511 86348791 -76251139 + L2 LINE L2 2996 3291 -22 28 48 0 0 chrX 86350380 86350422 -76249508 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chrX 86350601 86350629 -76249301 + AT_rich Low_complexity Low_complexity 1 28 0 2351 84 0 0 chrX 86351341 86351627 -76248303 - AluY SINE Alu -17 294 9 304 145 16 0 chrX 86351971 86352033 -76247897 + MER96B DNA MER1_type? 307 369 -48 2689 92 102 0 chrX 86352100 86352503 -76247427 - MLT2A1 LTR ERVL 0 444 1 3804 75 60 0 chrX 86352503 86353051 -76246879 - HERVL-A1 LTR ERVL 0 5654 5074 1404 150 0 61 chrX 86353051 86353210 -76246720 - AluSx SINE Alu -20 292 152 2108 138 0 3 chrX 86353210 86353508 -76246422 - AluSq SINE Alu -16 297 1 1404 150 0 61 chrX 86353508 86353594 -76246336 - AluSx SINE Alu -160 152 62 16645 94 5 2 chrX 86353594 86355922 -76244008 - HERVL LTR ERVL -566 5088 2754 768 129 26 13 chrX 86355922 86356077 -76243853 + CT-rich Low_complexity Low_complexity 3 159 0 2311 104 0 0 chrX 86356079 86356386 -76243544 - AluY SINE Alu -4 307 1 1646 177 48 28 chrX 86356405 86356761 -76243169 + THE1B LTR MaLR 2 364 0 504 209 11 28 chrX 86356781 86356963 -76242967 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 442 232 32 32 chrX 86356983 86357108 -76242822 - FRAM SINE Alu -46 130 6 254 268 31 10 chrX 86357113 86357210 -76242720 - L1M4 LINE L1 -874 5272 5174 1394 140 25 21 chrX 86357244 86357480 -76242450 - AluSg/x SINE Alu -10 302 66 613 200 72 90 chrX 86357513 86357566 -76242364 - L1M4 LINE L1 -1014 5132 5080 1533 161 26 71 chrX 86357566 86357876 -76242054 + AluSq SINE Alu 1 296 -17 613 200 72 90 chrX 86357876 86358112 -76241818 - L1M4 LINE L1 -1066 5080 4848 715 221 221 5 chrX 86358116 86358324 -76241606 + AluJb SINE Alu 5 257 -55 1835 145 39 0 chrX 86358344 86358626 -76241304 - AluSx SINE Alu -19 293 1 2026 148 0 0 chrX 86358664 86358968 -76240962 + AluSx SINE Alu 7 310 -2 4795 171 24 12 chrX 86359086 86360453 -76239477 + L1PB1 LINE L1 4770 6146 -5 521 161 21 0 chrX 86360476 86360569 -76239361 + MER66A LTR ERV1 384 478 0 1359 188 22 16 chrX 86360569 86360883 -76239047 + L1MA8 LINE L1 5954 6269 -22 213 167 24 0 chrX 86360965 86361007 -76238923 + (TA)n Simple_repeat Simple_repeat 1 43 0 4947 102 48 7 chrX 86361321 86362129 -76237801 - L1PA7 LINE L1 -1 6153 5313 210 129 48 0 chrX 86362133 86362195 -76237735 + (TA)n Simple_repeat Simple_repeat 2 66 0 21699 80 5 6 chrX 86362198 86366004 -76233926 - L1PA6 LINE L1 -17 6137 2310 1344 54 73 5 chrX 86366112 86366317 -76233613 - L1PA7 LINE L1 -184 5970 5752 470 158 181 8 chrX 86366330 86366463 -76233467 - MER53 DNA DNA -33 156 1 10336 106 9 8 chrX 86366768 86369105 -76230825 - L1PA7 LINE L1 -1 6153 3809 9553 86 203 6 chrX 86369105 86371464 -76228466 + L1P2 LINE L1 2916 5778 -377 273 282 28 0 chrX 86373744 86373815 -76226115 + CT-rich Low_complexity Low_complexity 6 78 0 227 328 42 25 chrX 86374229 86374348 -76225582 + MIR SINE MIR 86 206 -56 421 341 52 6 chrX 86374770 86374943 -76224987 + MIR SINE MIR 72 252 -10 184 333 0 19 chrX 86376357 86376411 -76223519 + MIR3 SINE MIR 143 195 -13 221 335 40 40 chrX 86376655 86376807 -76223123 + MIR3 SINE MIR 30 181 -27 1947 151 0 38 chrX 86376920 86377239 -76222691 + AluSq SINE Alu 1 307 -6 198 103 0 0 chrX 86377354 86377383 -76222547 + (A)n Simple_repeat Simple_repeat 1 29 0 313 281 116 30 chrX 86377542 86377706 -76222224 + MIR SINE MIR 85 262 0 4856 163 25 24 chrX 86379332 86380266 -76219664 + L1PA8A LINE L1 205 1139 -4736 19406 147 15 96 chrX 86380270 86382480 -76217450 + L1PA8A LINE L1 1187 3574 -2872 2086 127 105 8 chrX 86382480 86382881 -76217049 + LTR7 LTR ERV1 1 440 -10 19406 147 15 96 chrX 86382881 86385557 -76214373 + L1PA8A LINE L1 3574 6030 -416 2030 37 4 0 chrX 86385562 86385808 -76214122 - L1PA2 LINE L1 0 6155 5909 1148 203 0 5 chrX 86386484 86386681 -76213249 - AluJo SINE Alu -114 198 3 4397 65 7 0 chrX 86387034 86387650 -76212280 + L1P LINE L1 4203 4822 -1324 2046 115 37 21 chrX 86387650 86387996 -76211934 - LTR6A LTR ERV1 -248 316 1 15808 181 15 4 chrX 86387996 86391654 -76208276 - HERVS71 LTR ERV1 -69 8909 5198 3629 87 29 16 chrX 86391654 86392138 -76207792 - LTR2B LTR ERV1 0 490 1 15808 181 15 4 chrX 86392138 86392164 -76207766 - HERVS71 LTR ERV1 -3780 5198 5174 1709 146 4 0 chrX 86392161 86392407 -76207523 - HERVS71 LTR ERV1 -6040 2938 2692 * 198 0 0 0 chrX 86393147 86393169 -76206761 + (A)n Simple_repeat Simple_repeat 1 22 0 1549 175 11 11 chrX 86393169 86393472 -76206458 + AluSq SINE Alu 21 323 0 590 248 23 61 chrX 86393554 86393768 -76206162 + MER20 DNA MER1_type 1 206 -13 1830 185 36 15 chrX 86393796 86394126 -76205804 + MER1B DNA MER1_type 1 337 0 1229 169 24 59 chrX 86395129 86395419 -76204511 - AluJo SINE Alu -21 291 12 2050 112 0 48 chrX 86395582 86395894 -76204036 - AluSg SINE Alu -13 297 1 267 257 82 105 chrX 86395938 86396109 -76203821 - L1ME1 LINE L1 -17 6149 5983 2503 218 24 12 chrX 86396157 86396656 -76203274 + LTR10B LTR ERV1 1 505 0 2692 118 56 12 chrX 86397737 86398151 -76201779 - LTR3 LTR ERVK 0 432 1 298 140 80 0 chrX 86398557 86398607 -76201323 - AluSc SINE Alu -10 289 236 3325 126 116 8 chrX 86398607 86399181 -76200749 - LTR12 LTR ERV1 0 1794 118 1416 212 0 19 chrX 86399880 86400196 -76199734 + AluJo SINE Alu 3 312 0 2092 133 0 7 chrX 86400380 86400681 -76199249 + AluSq SINE Alu 1 299 -14 300 271 0 12 chrX 86400861 86400946 -76198984 + L1M4 LINE L1 83 166 -6376 696 190 0 36 chrX 86401640 86401777 -76198153 + FLAM_C SINE Alu 11 142 -1 764 285 63 0 chrX 86401838 86402045 -76197885 + MER58A DNA MER1_type 1 220 -4 347 291 101 7 chrX 86402133 86402281 -76197649 - L1M4 LINE L1 -6376 166 5 926 253 8 8 chrX 86402291 86402552 -76197378 - AluJo SINE Alu -8 304 44 339 281 61 0 chrX 86402555 86402637 -76197293 - AluJo SINE Alu -127 175 89 946 230 19 5 chrX 86402638 86402847 -76197083 - AluJo SINE Alu -90 222 11 40 37 0 0 chrX 86402987 86403041 -76196889 + AT_rich Low_complexity Low_complexity 1 54 0 269 199 30 23 chrX 86403249 86403380 -76196550 + (TATAA)n Simple_repeat Simple_repeat 3 134 0 311 219 45 26 chrX 86403447 86403602 -76196328 + (TTATA)n Simple_repeat Simple_repeat 2 159 0 799 261 4 4 chrX 86403721 86403951 -76195979 + L1PA15 LINE L1 2257 2486 -3660 * 4283 209 15 25 chrX 86403944 86404321 -76195609 + L1PA15 LINE L1 5228 5607 -558 2221 89 14 0 chrX 86404321 86404601 -76195329 + AluY SINE Alu 1 284 -27 4283 209 15 25 chrX 86404601 86405171 -76194759 + L1PA15 LINE L1 5607 6165 0 1331 279 105 43 chrX 86405162 86405513 -76194417 + L1M4 LINE L1 1082 1410 -5236 * 1210 272 3 3 chrX 86405513 86405814 -76194116 + AluJo SINE Alu 1 301 -11 1331 279 105 43 chrX 86405814 86406459 -76193471 + L1M4 LINE L1 1410 2140 -4506 4765 130 55 12 chrX 86406641 86407446 -76192484 - L1PA8 LINE L1 -1 6171 5333 1935 81 0 0 chrX 86407446 86407704 -76192226 + HUERS-P1 LTR ERV1 3649 3906 -2357 976 125 15 0 chrX 86407704 86407840 -76192090 + AluSq/x SINE Alu 1 138 -174 2279 175 71 24 chrX 86407942 86408850 -76191080 - L1PBa LINE L1 -5147 1716 621 903 176 28 34 chrX 86408850 86409026 -76190904 - HUERS-P3b LTR ERV1 -1382 6036 5862 224 307 117 24 chrX 86409339 86409544 -76190386 + L2 LINE L2 1758 1981 -1333 516 342 22 19 chrX 86409589 86409858 -76190072 + HERVI LTR ERV1 7378 7647 -138 212 140 0 40 chrX 86411666 86411716 -76188214 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 19143 33 2 1 chrX 86411846 86414671 -76185259 + L1PA3 LINE L1 3098 5926 -229 1237 195 53 28 chrX 86414773 86414933 -76184997 - AluJo SINE Alu -23 289 118 2170 142 0 0 chrX 86414933 86415243 -76184687 - AluSx SINE Alu -2 310 1 1237 195 53 28 chrX 86415243 86415364 -76184566 - AluJo SINE Alu -194 118 1 1667 222 109 36 chrX 86415412 86415881 -76184049 - MLT2B1 LTR ERVL -15 505 3 619 198 9 0 chrX 86415883 86415999 -76183931 + MLT1D LTR MaLR 389 505 0 309 158 13 13 chrX 86416336 86416412 -76183518 - MER96B DNA MER1_type? -246 171 96 2055 104 7 27 chrX 86416602 86416899 -76183031 + AluSp SINE Alu 1 291 -22 225 0 0 0 chrX 86417038 86417063 -76182867 + (A)n Simple_repeat Simple_repeat 1 25 0 245 265 118 0 chrX 86417189 86417291 -76182639 - L2 LINE L2 -5 3308 3195 214 339 110 9 chrX 86417769 86417878 -76182052 + MIR3 SINE MIR 66 185 -23 183 186 0 0 chrX 86417997 86418040 -76181890 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 388 216 191 56 chrX 86418109 86418271 -76181659 - MER3 DNA MER1_type -17 192 9 1209 236 109 11 chrX 86418321 86418596 -76181334 + AluJo SINE Alu 1 302 0 1753 165 0 14 chrX 86418615 86418920 -76181010 + AluSx SINE Alu 3 303 0 235 312 12 4 chrX 86419162 86419249 -76180681 + MIR SINE MIR 60 144 -64 480 165 66 0 chrX 86420092 86420183 -76179747 + L1PA7 LINE L1 6058 6154 0 3843 252 62 71 chrX 86420187 86421454 -76178476 + L1P3 LINE L1 24 1277 -5184 189 0 0 0 chrX 86421454 86421475 -76178455 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3843 252 62 71 chrX 86421475 86421715 -76178215 + L1P3 LINE L1 1277 1518 -4943 3936 238 39 39 chrX 86421817 86423422 -76176508 - L1 LINE L1 -2807 3339 1703 269 261 45 3 chrX 86423541 86423665 -76176265 + MLT1E LTR MaLR 277 410 -216 791 245 0 0 chrX 86423678 86423833 -76176097 - AluJb SINE Alu -18 294 140 1678 128 25 41 chrX 86423833 86423883 -76176047 - HUERS-P1 LTR ERV1 -2063 4200 4151 2078 140 0 0 chrX 86423883 86424176 -76175754 - AluSg SINE Alu -17 293 1 1678 128 25 41 chrX 86424176 86424445 -76175485 - HUERS-P1 LTR ERV1 -2112 4151 3886 1840 174 3 0 chrX 86424449 86424748 -76175182 - AluSg SINE Alu -5 305 6 21 36 0 0 chrX 86424753 86424781 -76175149 + AT_rich Low_complexity Low_complexity 1 28 0 826 234 63 50 chrX 86424885 86425107 -76174823 - AluJo SINE Alu -85 227 3 2507 77 3 3 chrX 86425296 86425607 -76174323 + AluY SINE Alu 1 311 0 8587 111 24 15 chrX 86425997 86427377 -76172553 + L1PA7 LINE L1 2674 4065 -2081 243 0 0 0 chrX 86429399 86429426 -76170504 + (T)n Simple_repeat Simple_repeat 1 27 0 1332 126 5 0 chrX 86430455 86430646 -76169284 + AluSq SINE Alu 1 192 -121 8608 109 6 1 chrX 86430746 86431995 -76167935 + L1PA7 LINE L1 3983 5237 -909 1031 99 0 0 chrX 86431994 86432135 -76167795 + L1PA7 LINE L1 5959 6099 -55 * 1362 225 13 0 chrX 86432273 86432588 -76167342 + L1P3 LINE L1 2361 2679 -3782 2803 182 19 39 chrX 86432600 86433188 -76166742 + LTR22 LTR ERVK 5 580 0 567 163 22 0 chrX 86433205 86433297 -76166633 + AluSg/x SINE Alu 189 282 -30 15960 47 36 2 chrX 86633297 86635366 -75964564 - L1P LINE L1 -1055 5091 2954 207 69 0 0 chrX 86635375 86635404 -75964526 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1182 144 10 5 chrX 86635410 86635618 -75964312 - L1MA1 LINE L1 0 6302 6094 211 360 18 9 chrX 86635955 86636066 -75963864 + L2 LINE L2 1875 1986 -1328 2421 117 48 0 chrX 86636066 86636424 -75963506 + THE1C LTR MaLR 1 375 0 2586 131 101 5 chrX 86636424 86636859 -75963071 + THE1C-int LTR MaLR 1 477 -1103 1152 139 30 2 chrX 86636861 86637049 -75962881 - LTR12 LTR ERV1 -156 558 276 362 271 17 0 chrX 86637051 86637169 -75962761 - LTR30 LTR ERV1 -79 643 524 1813 124 127 19 chrX 86637169 86637491 -75962439 - pTR5 LTR ERV1 -432 2006 1650 833 201 52 34 chrX 86637583 86637851 -75962079 - pTR5 LTR ERV1 -1410 1028 756 7021 147 14 9 chrX 86637851 86638964 -75960966 + THE1C-int LTR MaLR 463 1580 0 2366 137 16 8 chrX 86638964 86639336 -75960594 + THE1C LTR MaLR 1 375 0 25 31 0 0 chrX 86640631 86640663 -75959267 + AT_rich Low_complexity Low_complexity 1 32 0 268 301 13 78 chrX 86641004 86641157 -75958773 + MER5B DNA MER1_type 2 144 -34 313 209 64 122 chrX 86641573 86641745 -75958185 + HAL1b LINE L1 1187 1348 0 362 306 8 8 chrX 86642691 86642812 -75957118 + MLT1L LTR MaLR 133 253 -362 228 322 119 0 chrX 86642882 86643000 -75956930 + MLT1L LTR MaLR 482 613 -2 323 327 125 48 chrX 86643565 86643837 -75956093 - L1MC/D LINE L1 -2005 5803 5511 791 235 89 0 chrX 86644382 86644561 -75955369 + MER58A DNA MER1_type 1 195 -29 266 320 107 40 chrX 86646088 86646313 -75953617 + L2 LINE L2 1549 1788 -1526 5721 217 34 10 chrX 86646743 86649348 -75950582 - L1MC1 LINE L1 -18 6595 3931 1652 230 19 74 chrX 86649384 86650126 -75949804 - L1MC1 LINE L1 -3382 3044 2346 1453 128 0 0 chrX 86650126 86650337 -75949593 - AluSg/x SINE Alu -5 305 95 620 223 51 0 chrX 86650425 86650582 -75949348 - L1PA16 LINE L1 0 6166 6002 9421 238 16 13 chrX 86650776 86653253 -75946677 - L1PA16 LINE L1 -178 5988 3500 207 0 0 0 chrX 86653253 86653276 -75946654 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9421 238 16 13 chrX 86653276 86654263 -75945667 - L1PA16 LINE L1 -2666 3500 2517 4256 91 34 0 chrX 86654278 86654897 -75945033 + L1PBa LINE L1 2102 2741 -4122 5111 193 12 5 chrX 86654909 86656121 -75943809 + L1PBa LINE L1 2799 4019 -2843 657 241 78 5 chrX 86656112 86656303 -75943627 + L1PA16 LINE L1 5960 6164 -2 * 26 50 0 0 chrX 86656303 86656343 -75943587 + AT_rich Low_complexity Low_complexity 1 40 0 329 315 41 0 chrX 86656434 86656580 -75943350 - HAL1 LINE L1 -1242 1265 1114 2075 92 17 3 chrX 86657814 86658107 -75941823 + AluSx SINE Alu 1 297 -15 515 267 28 6 chrX 86659131 86659307 -75940623 + MER104 DNA MER2_type 1 180 0 21 36 0 0 chrX 86659535 86659563 -75940367 + AT_rich Low_complexity Low_complexity 1 28 0 182 33 67 0 chrX 86659929 86659959 -75939971 + T-rich Low_complexity Low_complexity 4 35 0 22301 181 16 21 chrX 86659960 86666323 -75933607 - L1PA10 LINE L1 -19 6464 1 315 319 70 32 chrX 86666885 86667042 -75932888 - MIR SINE MIR -28 234 72 1522 265 185 4 chrX 86667045 86667558 -75932372 + MLT2F LTR ERVL 1 606 -57 256 130 58 29 chrX 86667563 86667632 -75932298 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 203 373 13 0 chrX 86667840 86667915 -75932015 + MIR3 SINE MIR 85 160 -48 2503 118 6 3 chrX 86667921 86668284 -75931646 - THE1B LTR MaLR 0 364 1 4480 109 69 8 chrX 86668284 86668952 -75930978 - THE1B-int LTR MaLR 0 1580 872 2176 175 27 3 chrX 86669536 86669908 -75930022 - MER54A LTR ERVL -1 900 520 343 244 12 12 chrX 86669892 86669978 -75929952 - MER54A LTR ERVL -815 86 1 * 21 57 0 0 chrX 86671205 86671240 -75928690 + AT_rich Low_complexity Low_complexity 1 35 0 6958 50 0 4 chrX 86671444 86672431 -75927499 - L1PA6 LINE L1 0 6154 5154 186 341 24 12 chrX 86673406 86673491 -75926439 + L3b LINE CR1 1352 1437 -146 451 276 65 0 chrX 86673559 86673682 -75926248 - MIR SINE MIR -15 247 117 562 264 214 0 chrX 86673950 86674109 -75925821 + MIR SINE MIR 1 193 -69 188 236 42 69 chrX 86674150 86674222 -75925708 + MIR SINE MIR 193 262 0 8080 221 57 10 chrX 86674330 86676182 -75923748 - L1MB1 LINE L1 0 6168 4116 342 0 0 0 chrX 86676182 86676220 -75923710 + (TG)n Simple_repeat Simple_repeat 2 39 0 8080 221 57 10 chrX 86676220 86677324 -75922606 - L1MB1 LINE L1 -2052 4116 3065 2047 110 26 19 chrX 86678092 86678401 -75921529 + AluSq SINE Alu 1 311 -2 21 0 0 0 chrX 86679087 86679108 -75920822 + AT_rich Low_complexity Low_complexity 1 21 0 720 262 6 6 chrX 86679835 86680003 -75919927 + MER69 DNA AcHobo 401 568 -1958 * 1745 195 127 2 chrX 86680001 86680457 -75919473 + MER69 DNA AcHobo 2010 2522 -4 204 196 0 39 chrX 86680849 86680900 -75919030 + GA-rich Low_complexity Low_complexity 3 51 0 251 350 80 31 chrX 86681250 86681413 -75918517 - L3b LINE CR1 -110 1473 1303 256 186 34 0 chrX 86681748 86681807 -75918123 + A-rich Low_complexity Low_complexity 4 64 0 218 347 100 18 chrX 86682086 86682256 -75917674 + MIR SINE MIR 69 252 -10 1852 155 6 9 chrX 86682546 86682863 -75917067 - Tigger1 DNA MER2_type -25 2393 2078 4351 133 22 14 chrX 86682875 86683606 -75916324 - L1PB2 LINE L1 -3 6864 6128 2938 217 13 20 chrX 86683613 86684370 -75915560 - L1PB2 LINE L1 -1637 5225 4474 8740 169 44 12 chrX 86684379 86685629 -75914301 - L1PB2 LINE L1 -3737 3125 1916 2200 93 0 20 chrX 86685629 86685929 -75914001 - AluSg SINE Alu 0 310 17 8740 169 44 12 chrX 86685929 86688633 -75911297 - L1PB2 LINE L1 -4946 1916 1 11382 163 17 31 chrX 86688652 86688916 -75911014 - Tigger1 DNA MER2_type -327 2091 1825 189 74 0 0 chrX 86688916 86688943 -75910987 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 11382 163 17 31 chrX 86688943 86688962 -75910968 - Tigger1 DNA MER2_type -593 1825 1807 194 0 95 24 chrX 86688962 86689004 -75910926 + T-rich Low_complexity Low_complexity 1 45 0 9662 65 78 0 chrX 86689007 86690231 -75909699 - SVA Other Other -17 1369 50 228 35 0 0 chrX 86690231 86690260 -75909670 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 11382 163 17 31 chrX 86690260 86690615 -75909315 - Tigger1 DNA MER2_type -612 1806 1448 884 209 0 0 chrX 86690615 86690773 -75909157 - FRAM SINE Alu -6 160 3 11382 163 17 31 chrX 86690773 86691612 -75908318 - Tigger1 DNA MER2_type -970 1448 643 2363 50 0 0 chrX 86691612 86691892 -75908038 - AluY SINE Alu 0 311 32 11382 163 17 31 chrX 86691892 86692527 -75907403 - Tigger1 DNA MER2_type -1775 643 1 4520 180 32 17 chrX 86692530 86693471 -75906459 - Tigger3b DNA MER2_type 0 1231 277 483 204 65 0 chrX 86693475 86693568 -75906362 - Tigger3b DNA MER2_type -1132 99 1 1870 193 96 37 chrX 86694306 86694819 -75905111 + L1PA16 LINE L1 5624 6166 0 3540 225 27 23 chrX 86694821 86695816 -75904114 + L1P LINE L1 2956 3954 -2192 1232 220 51 20 chrX 86695818 86696113 -75903817 - MLT1C LTR MaLR -163 304 1 24 53 0 0 chrX 86696181 86696219 -75903711 + AT_rich Low_complexity Low_complexity 1 38 0 4519 303 65 30 chrX 86696372 86696463 -75903467 + L2 LINE L2 687 773 -2541 1882 143 51 40 chrX 86696463 86696834 -75903096 + THE1C LTR MaLR 1 375 0 4519 303 65 30 chrX 86696834 86696873 -75903057 + L2 LINE L2 773 809 -2505 1331 168 73 103 chrX 86696873 86697337 -75902593 - LTR7 LTR ERV1 0 450 1 4519 303 65 30 chrX 86697337 86698269 -75901661 + L2 LINE L2 809 1707 -1607 2286 152 39 20 chrX 86698269 86698711 -75901219 - LTR7 LTR ERV1 0 450 1 4519 303 65 30 chrX 86698711 86699536 -75900394 + L2 LINE L2 1707 2642 -672 249 264 0 0 chrX 86699636 86699689 -75900241 + L2 LINE L2 939 991 -2323 9516 214 12 16 chrX 86700856 86702547 -75897383 - L1PA15-16 LINE L1 -1861 4988 3307 2067 198 63 58 chrX 86702547 86703098 -75896832 + MLT2B3 LTR ERVL 1 554 0 9516 214 12 16 chrX 86703098 86703642 -75896288 - L1PA15-16 LINE L1 -3542 3307 2762 3200 103 16 0 chrX 86703653 86704099 -75895831 + MLT2A2 LTR ERVL 1 453 0 38046 95 4 6 chrX 86704099 86709235 -75890695 + HERVL-A2 LTR ERVL 1 5125 -529 399 103 0 0 chrX 86709235 86709303 -75890627 + MLT2A2 LTR ERVL 386 453 0 3187 188 8 8 chrX 86709309 86710232 -75889698 + L1PA12 LINE L1 2552 3481 -4103 307 349 28 0 chrX 86710248 86710357 -75889573 - Charlie1 DNA MER1_type -2643 118 7 206 151 27 55 chrX 86710619 86710692 -75889238 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 1271 94 6 0 chrX 86710693 86710864 -75889066 - L1PA15 LINE L1 -46 6119 5948 2822 60 52 86 chrX 86710868 86711371 -75888559 - LTR21A LTR ERV1 -19 486 1 4295 117 3 0 chrX 86711371 86712004 -75887926 - L1PA15 LINE L1 -218 5947 5313 1455 147 119 75 chrX 86712233 86712662 -75887268 - LTR7 LTR ERV1 -2 448 1 425 324 7 7 chrX 86712781 86712923 -75887007 - MIR SINE MIR -26 236 95 5806 213 31 54 chrX 86712993 86713486 -75886444 - L1 LINE L1 -1015 5131 4628 2492 149 24 14 chrX 86713486 86713909 -75886021 + MSTA LTR MaLR 1 427 -1 7836 205 34 9 chrX 86713911 86715519 -75884411 + MSTA-int LTR MaLR 2 1650 -1 2543 143 21 14 chrX 86715520 86715945 -75883985 + MSTA LTR MaLR 1 428 0 5806 213 31 54 chrX 86715945 86717205 -75882725 - L1 LINE L1 -1518 4628 3414 3933 214 49 18 chrX 86717211 86718322 -75881608 + L1MA9 LINE L1 5137 6282 -30 320 301 32 26 chrX 86718474 86718630 -75881300 + L1M4 LINE L1 2197 2353 -3793 2395 69 0 3 chrX 86719062 86719367 -75880563 - AluY SINE Alu -7 304 1 26 0 0 0 chrX 86720030 86720056 -75879874 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chrX 86720524 86720547 -75879383 + AT_rich Low_complexity Low_complexity 1 23 0 517 268 73 12 chrX 86721496 86721660 -75878270 - MER45A DNA AcHobo -3 175 2 1266 172 3 77 chrX 86722061 86722358 -75877572 - AluJb SINE Alu -5 307 33 26 30 0 0 chrX 86722537 86722570 -75877360 + AT_rich Low_complexity Low_complexity 1 33 0 234 270 14 27 chrX 86724069 86724143 -75875787 + GA-rich Low_complexity Low_complexity 1 73 0 350 312 37 28 chrX 86724346 86724561 -75875369 - L1MC4a LINE L1 -1778 6030 5814 449 271 23 8 chrX 86724562 86724695 -75875235 - L1ME3A LINE L1 -42 6128 5994 279 227 62 39 chrX 86725489 86725617 -75874313 - L1ME4a LINE L1 0 6121 5991 32 0 0 0 chrX 86725809 86725841 -75874089 + AT_rich Low_complexity Low_complexity 1 32 0 2131 79 40 0 chrX 86725844 86726122 -75873808 - AluY SINE Alu -22 289 1 448 323 62 6 chrX 86726257 86726675 -75873255 - L1MC4a LINE L1 -525 5639 5198 3850 266 55 45 chrX 86726689 86728640 -75871290 - L1MC4a LINE L1 0 7808 5837 1266 258 54 16 chrX 86728641 86729029 -75870901 - L1MD2 LINE L1 -10 6349 5947 1214 264 21 49 chrX 86729039 86729573 -75870357 - L1MC4a LINE L1 -2364 3782 3264 829 171 11 6 chrX 86729576 86729751 -75870179 + CT-rich Low_complexity Low_complexity 3 178 0 459 144 119 0 chrX 86729764 86729882 -75870048 - AluSg/x SINE Alu -2 307 176 1543 121 0 0 chrX 86729908 86730123 -75869807 - AluSq SINE Alu -94 219 5 1957 278 73 24 chrX 86730134 86730178 -75869752 - L1MC4a LINE L1 -2875 3271 3231 396 0 0 0 chrX 86730178 86730222 -75869708 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1625 172 0 41 chrX 86730222 86730512 -75869418 - AluJb SINE Alu -34 278 1 1957 278 73 24 chrX 86730512 86731455 -75868475 - L1MC4a LINE L1 -2914 3232 2235 445 284 57 5 chrX 86731441 86731635 -75868295 - L1M4 LINE L1 -1039 5107 4904 * 384 290 114 16 chrX 86731639 86731956 -75867974 - L1M4 LINE L1 -1088 5058 4711 418 263 52 34 chrX 86731995 86732304 -75867626 - L1M4 LINE L1 -1537 4609 4303 1463 187 137 57 chrX 86732353 86732754 -75867176 + MLT2B1 LTR ERVL 1 433 -87 581 304 92 39 chrX 86732866 86733312 -75866618 - L1M4 LINE L1 -1897 4249 3828 261 0 0 0 chrX 86733312 86733341 -75866589 + (TG)n Simple_repeat Simple_repeat 2 30 0 581 304 92 39 chrX 86733341 86733976 -75865954 - L1M4 LINE L1 -2318 3828 3111 24 32 0 0 chrX 86734101 86734132 -75865798 + AT_rich Low_complexity Low_complexity 1 31 0 402 259 56 0 chrX 86734135 86734243 -75865687 - L1MC4a LINE L1 -970 6838 6725 * 10702 203 51 105 chrX 86734227 86735449 -75864481 - L1P3 LINE L1 -2316 4145 2858 1853 150 64 9 chrX 86735449 86735776 -75864154 - THE1B LTR MaLR -19 345 1 10702 203 51 105 chrX 86735776 86738511 -75861419 - L1P3 LINE L1 -3603 2858 8 1413 115 96 0 chrX 86738590 86738799 -75861131 + AluSq SINE Alu 3 231 -82 24 32 0 0 chrX 86739109 86739140 -75860790 + AT_rich Low_complexity Low_complexity 1 31 0 288 299 41 0 chrX 86739348 86739445 -75860485 + Charlie7 DNA MER1_type 1 101 -2511 751 225 45 30 chrX 86739527 86739727 -75860203 + MER3 DNA MER1_type 2 204 -5 27 49 0 0 chrX 86740578 86740619 -75859311 + AT_rich Low_complexity Low_complexity 1 41 0 11659 234 47 29 chrX 86740808 86747257 -75852673 + L1MA5 LINE L1 1 7356 -6 2040 191 87 2 chrX 86747501 86747926 -75852004 - LOR1b LTR ERV1 0 461 1 596 124 0 0 chrX 86747936 86748025 -75851905 - LOR1b-int LTR ERV1 -2 8118 8030 1611 157 20 0 chrX 86748027 86748282 -75851648 - LOR1b-int LTR ERV1 -2060 6060 5801 * 9878 135 28 33 chrX 86748268 86750063 -75849867 - LOR1b-int LTR ERV1 -2592 5528 3743 8792 124 13 31 chrX 86750103 86751602 -75848328 - LOR1b-int LTR ERV1 -4287 3833 2363 1276 247 136 42 chrX 86751602 86752391 -75847539 + LTR28 LTR ERV1 1 993 -27 12547 98 7 6 chrX 86752394 86754225 -75845705 - L1P LINE L1 -2531 3615 1783 2857 47 0 50 chrX 86754244 86754628 -75845302 + L1PA7 LINE L1 5784 6148 -6 908 152 35 0 chrX 86754630 86754801 -75845129 - LOR1b-int LTR ERV1 -5869 2251 2075 * 3354 150 81 15 chrX 86754793 86755408 -75844522 - LOR1b-int LTR ERV1 -7262 858 203 650 132 88 37 chrX 86755400 86755536 -75844394 - LOR1b-int LTR ERV1 -7712 408 266 * 1857 204 69 14 chrX 86755539 86755976 -75843954 - LOR1b LTR ERV1 0 461 1 218 222 0 0 chrX 86757221 86757266 -75842664 + (TA)n Simple_repeat Simple_repeat 1 45 0 191 267 22 67 chrX 86758089 86758179 -75841751 + MIR3 SINE MIR 110 195 -13 23 33 0 0 chrX 86759374 86759404 -75840526 + AT_rich Low_complexity Low_complexity 1 30 0 278 276 38 9 chrX 86759632 86759737 -75840193 - MER103 DNA DNA -3 163 56 9195 32 0 1 chrX 86761161 86763048 -75836882 + L1PA3 LINE L1 4271 6153 -2 323 246 30 12 chrX 86763074 86763241 -75836689 + (TA)n Simple_repeat Simple_repeat 2 171 0 451 279 31 8 chrX 86764071 86764200 -75835730 - MIR SINE MIR -70 192 61 184 0 0 88 chrX 86764217 86764251 -75835679 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 186 344 133 0 chrX 86764393 86764483 -75835447 - MIR SINE MIR -8 254 153 12768 238 23 10 chrX 86764485 86769342 -75830588 - L1PA16 LINE L1 -6 7598 2676 312 98 78 0 chrX 86769373 86769424 -75830506 - MLT2A1 LTR ERVL 0 453 399 594 131 5 41 chrX 86769428 86769801 -75830129 + (TA)n Simple_repeat Simple_repeat 1 359 0 2882 103 0 5 chrX 86769809 86770215 -75829715 - MLT2A1 LTR ERVL -40 404 1 11046 87 8 1 chrX 86770252 86771710 -75828220 - HERVL-A1 LTR ERVL -76 5578 4110 4706 83 2 0 chrX 86771708 86772323 -75827607 - HERVL-A2 LTR ERVL -5038 616 1 * 2991 114 14 9 chrX 86772325 86772771 -75827159 - MLT2A2 LTR ERVL -5 448 1 2507 63 3 0 chrX 86772824 86773127 -75826803 - AluY SINE Alu -7 304 1 810 302 65 18 chrX 86773133 86773227 -75826703 - L1PA16 LINE L1 -4983 2598 2510 225 0 0 0 chrX 86773227 86773252 -75826678 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 810 302 65 18 chrX 86773252 86773554 -75826376 - L1PA16 LINE L1 -5071 2510 2183 1832 134 7 0 chrX 86773870 86774145 -75825785 - AluSx SINE Alu -35 277 1 718 344 35 29 chrX 86774466 86774917 -75825013 - L1PA16 LINE L1 -6332 1242 789 524 209 38 0 chrX 86775298 86775403 -75824527 - Tigger5 DNA MER2_type 0 2323 2215 1281 208 137 77 chrX 86775454 86775973 -75823957 - MLT2B3 LTR ERVL -4 550 1 771 311 72 43 chrX 86776163 86776633 -75823297 + MLT1H LTR MaLR 65 548 -1 198 0 0 0 chrX 86777040 86777062 -75822868 + (TC)n Simple_repeat Simple_repeat 1 22 0 414 0 0 0 chrX 86777063 86777109 -75822821 + (TG)n Simple_repeat Simple_repeat 2 47 0 2723 194 24 9 chrX 86777380 86777958 -75821972 - L1MA7 LINE L1 -355 5936 5350 * 4596 236 47 54 chrX 86777941 86779227 -75820703 + MLT1A1-int LTR MaLR 458 1735 0 1681 228 20 0 chrX 86779227 86779583 -75820347 + MLT1A1 LTR MaLR 1 363 -2 2111 151 32 3 chrX 86779585 86779955 -75819975 - L1M3 LINE L1 -399 5784 5404 7289 255 60 34 chrX 86779990 86780688 -75819242 - L1M3 LINE L1 -872 5274 4596 1518 220 31 11 chrX 86780688 86781042 -75818888 - MLT1A1 LTR MaLR 0 365 5 7289 255 60 34 chrX 86781042 86781271 -75818659 - L1M3 LINE L1 -1550 4596 4374 2292 88 0 0 chrX 86781271 86781567 -75818363 + AluSq SINE Alu 1 296 -17 7289 255 60 34 chrX 86781567 86781680 -75818250 - L1M3 LINE L1 -1772 4374 4265 2171 130 0 9 chrX 86781680 86781995 -75817935 - AluSx SINE Alu 0 312 1 7289 255 60 34 chrX 86781995 86783695 -75816235 - L1M3 LINE L1 -1881 4265 2461 305 254 45 18 chrX 86784366 86784476 -75815454 + L1MA9 LINE L1 6027 6139 -173 3219 174 63 30 chrX 86785046 86785888 -75814042 + pTR5 LTR ERV1 5 253 -461 1728 209 3 3 chrX 86785888 86786199 -75813731 + L1MA3 LINE L1 415 725 -6840 * 8680 185 65 15 chrX 86786197 86788436 -75811494 + L1MA3 LINE L1 4027 6623 -1101 221 56 0 28 chrX 86788436 86788472 -75811458 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 8680 185 65 15 chrX 86788472 86789405 -75810525 + L1MA3 LINE L1 6623 7509 -215 240 279 31 105 chrX 86790000 86790173 -75809757 - MER5A DNA MER1_type -14 164 2 424 259 103 87 chrX 86790240 86790425 -75809505 + MIR SINE MIR 50 237 -25 26 0 0 0 chrX 86790549 86790575 -75809355 + AT_rich Low_complexity Low_complexity 1 26 0 2190 99 0 0 chrX 86790839 86791159 -75808771 + AluSc SINE Alu 1 320 0 24 53 0 0 chrX 86791739 86791777 -75808153 + AT_rich Low_complexity Low_complexity 1 38 0 2152 143 75 36 chrX 86791867 86792279 -75807651 + MSTA LTR MaLR 1 428 0 1754 29 0 0 chrX 86793788 86793996 -75805934 + L1PA4 LINE L1 5940 6147 -8 22 35 0 0 chrX 86794783 86794812 -75805118 + AT_rich Low_complexity Low_complexity 1 29 0 207 333 67 44 chrX 86795187 86795277 -75804653 - L2 LINE L2 -8 3264 3173 215 348 16 76 chrX 86795394 86795578 -75804352 - L2 LINE L2 -189 3083 2911 1155 230 44 4 chrX 86796532 86796780 -75803150 + Tigger7 DNA MER2_type 7 264 -2223 483 214 10 10 chrX 86796780 86796878 -75803052 + Tigger7 DNA MER2_type 2390 2487 0 341 361 37 45 chrX 86796906 86797150 -75802780 + MIR SINE MIR 2 243 -19 300 339 89 9 chrX 86797341 86797453 -75802477 + L2 LINE L2 3188 3308 -5 2321 75 20 32 chrX 86797524 86797871 -75802059 + L1PA12 LINE L1 5824 6166 -2 430 335 45 0 chrX 86798466 86798621 -75801309 + L2 LINE L2 1079 1240 -2074 346 141 109 16 chrX 86799066 86799194 -75800736 + (TTATA)n Simple_repeat Simple_repeat 1 140 0 28 0 0 0 chrX 86799203 86799231 -75800699 + AT_rich Low_complexity Low_complexity 1 28 0 2268 96 0 3 chrX 86799242 86799535 -75800395 + AluY SINE Alu 1 292 -19 16712 167 19 16 chrX 86799684 86802655 -75797275 - L1PA15-16 LINE L1 -3870 2979 1 496 256 48 57 chrX 86802678 86802905 -75797025 - HAL1 LINE L1 0 2507 2283 21 0 0 0 chrX 86803086 86803107 -75796823 + AT_rich Low_complexity Low_complexity 1 21 0 738 295 91 21 chrX 86804075 86804316 -75795614 + MIR SINE MIR 5 262 0 22 0 0 0 chrX 86805080 86805102 -75794828 + AT_rich Low_complexity Low_complexity 1 22 0 220 329 71 32 chrX 86805605 86805760 -75794170 + MIR SINE MIR 92 252 -10 626 164 10 0 chrX 86806020 86806124 -75793806 + U6 snRNA snRNA 1 105 -2 9258 242 80 18 chrX 86806144 86810312 -75789618 + L1PA16 LINE L1 1706 6144 -22 29 28 0 0 chrX 86810312 86810348 -75789582 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrX 86810799 86810827 -75789103 + AT_rich Low_complexity Low_complexity 1 28 0 376 325 29 21 chrX 86811365 86811671 -75788259 + L1 LINE L1 3519 3822 -2324 350 252 19 0 chrX 86811679 86811782 -75788148 + L1MA10 LINE L1 6228 6332 -2 346 278 77 18 chrX 86811955 86812124 -75787806 - L1MCa LINE L1 -4197 2229 2051 1885 246 27 8 chrX 86812161 86812971 -75786959 + L1MC2 LINE L1 2247 3073 -3353 * 2628 247 74 15 chrX 86812964 86814281 -75785649 + L1MC2 LINE L1 4477 5873 -750 7025 204 12 7 chrX 86814281 86816782 -75783148 - L1PA16 LINE L1 0 6166 3658 3336 171 47 27 chrX 86816782 86817456 -75782474 + L1MC2 LINE L1 5859 6566 -58 2384 59 0 26 chrX 86817456 86817761 -75782169 - AluY SINE Alu -14 297 1 3336 171 47 27 chrX 86817761 86817811 -75782119 + L1MC2 LINE L1 6566 6614 -10 280 275 68 2 chrX 86817905 86818008 -75781922 + MIR SINE MIR 36 143 -65 29 28 0 0 chrX 86819514 86819550 -75780380 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chrX 86820297 86820327 -75779603 + AT_rich Low_complexity Low_complexity 1 30 0 834 242 23 104 chrX 86821260 86821653 -75778277 - MLT1A1 LTR MaLR 0 365 5 1957 87 83 4 chrX 86822614 86822890 -75777040 + AluSq SINE Alu 1 298 -15 24 67 0 0 chrX 86823102 86823147 -75776783 + AT_rich Low_complexity Low_complexity 1 45 0 2002 201 124 92 chrX 86824369 86825120 -75774810 - LTR48 LTR ERV1 0 787 13 22 35 0 0 chrX 86825423 86825452 -75774478 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chrX 86826307 86826344 -75773586 + AT_rich Low_complexity Low_complexity 1 37 0 3736 151 29 52 chrX 86826457 86826937 -75772993 + MER50 LTR ERV1 1 459 -275 2426 72 7 0 chrX 86826937 86827244 -75772686 + AluSc SINE Alu 1 309 0 3736 151 29 52 chrX 86827244 86827514 -75772416 + MER50 LTR ERV1 459 734 0 4878 146 8 4 chrX 86827514 86828269 -75771661 + MER50-int LTR ERV1 1 758 -6447 297 79 0 0 chrX 86828268 86828306 -75771624 - MER50-int LTR ERV1 -6411 794 757 * 851 96 15 37 chrX 86828320 86828455 -75771475 + MER50-int LTR ERV1 763 894 -6311 5786 94 8 24 chrX 86828455 86829299 -75770631 - L1PA10 LINE L1 -17 6151 5321 1414 161 11 72 chrX 86829299 86829578 -75770352 - AluSx SINE Alu -13 299 38 13160 146 9 2 chrX 86829591 86831792 -75768138 - L1PA10 LINE L1 -847 5299 3082 19895 150 29 31 chrX 86831792 86835999 -75763931 + MER41-int LTR ERV1 446 5653 -1552 189 265 61 0 chrX 86835999 86836048 -75763882 - MIR SINE MIR -88 120 69 19895 150 29 31 chrX 86836048 86836424 -75763506 + MER41-int LTR ERV1 5653 6028 -1177 2095 110 13 13 chrX 86836421 86836738 -75763192 + MER50-int LTR ERV1 6881 7197 -8 * 3914 180 16 8 chrX 86836738 86837444 -75762486 + MER50 LTR ERV1 1 711 -23 2552 221 58 24 chrX 86837451 86838031 -75761899 - LTR39 LTR ERV1 -29 754 150 1451 186 72 31 chrX 86838031 86838391 -75761539 - THE1C LTR MaLR 0 375 1 2552 221 58 24 chrX 86838391 86838429 -75761501 - LTR39 LTR ERV1 -633 150 115 9145 146 13 35 chrX 86838429 86840006 -75759924 - THE1C-int LTR MaLR -36 1544 4 984 150 13 53 chrX 86840009 86840210 -75759720 - THE1B LTR MaLR 0 364 193 1297 257 49 60 chrX 86840211 86840681 -75759249 - L1MCa LINE L1 -5915 511 47 10858 225 21 40 chrX 86841223 86844871 -75755059 + L1PA15 LINE L1 1459 5072 -1725 1974 200 56 12 chrX 86844876 86845286 -75754644 - MSTA LTR MaLR 0 428 1 7468 228 15 8 chrX 86845289 86846927 -75753003 - MSTA-int LTR MaLR -3 1648 1 1964 190 80 3 chrX 86846927 86847316 -75752614 - MSTA LTR MaLR 0 428 10 980 223 119 7 chrX 86847325 86847603 -75752327 + L1PA15 LINE L1 5074 5382 -1415 1589 195 13 6 chrX 86847637 86847950 -75751980 + L1PA15 LINE L1 6502 6816 0 720 252 0 43 chrX 86847950 86848160 -75751770 + L1PA16 LINE L1 5961 6161 -5 1954 86 0 4 chrX 86848532 86848788 -75751142 + AluY SINE Alu 44 298 -13 2243 128 17 3 chrX 86848975 86849335 -75750595 - L1PB1 LINE L1 -1 6866 6502 327 104 0 0 chrX 86849335 86849383 -75750547 + (TA)n Simple_repeat Simple_repeat 2 49 0 13446 202 47 20 chrX 86849385 86849558 -75750372 - L1PB1 LINE L1 -409 6458 6291 4623 98 140 26 chrX 86849558 86850299 -75749631 + LTR12 LTR ERV1 1 826 0 13446 202 47 20 chrX 86850299 86854280 -75745650 - L1PB1 LINE L1 -576 6291 2418 274 81 0 0 chrX 86854280 86854317 -75745613 + MADE1 DNA Mariner 3 39 -41 13446 202 47 20 chrX 86854317 86854747 -75745183 - L1PB1 LINE L1 -4449 2418 2001 207 0 0 0 chrX 86854747 86854770 -75745160 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 13446 202 47 20 chrX 86854770 86855123 -75744807 - L1PB1 LINE L1 -4866 2001 1326 7372 235 44 41 chrX 86855230 86857033 -75742897 - L1MC1 LINE L1 -17 6596 4799 1591 190 67 22 chrX 86857033 86857208 -75742722 - THE1C LTR MaLR -1 374 208 414 39 0 0 chrX 86857208 86857260 -75742670 + (TG)n Simple_repeat Simple_repeat 2 53 0 1591 190 67 22 chrX 86857260 86857442 -75742488 - THE1C LTR MaLR -167 208 1 7372 235 44 41 chrX 86857442 86858499 -75741431 - L1MC1 LINE L1 -1814 4799 3727 2298 90 6 3 chrX 86858499 86858810 -75741120 - AluSx SINE Alu 0 312 1 7372 235 44 41 chrX 86858810 86859647 -75740283 - L1MC1 LINE L1 -2886 3727 2894 441 215 54 0 chrX 86859665 86859758 -75740172 - L1MC1 LINE L1 -6310 116 19 189 147 0 0 chrX 86859983 86860017 -75739913 + (TA)n Simple_repeat Simple_repeat 1 34 0 3911 180 10 1 chrX 86860202 86860873 -75739057 + Tigger1 DNA MER2_type 1 677 -1741 7888 157 19 41 chrX 86860890 86862382 -75737548 + Tigger1 DNA MER2_type 959 2417 -1 794 324 76 10 chrX 86862428 86862912 -75737018 - Charlie7 DNA MER1_type -2054 558 43 2322 61 3 16 chrX 86863020 86863332 -75736598 - AluY SINE Alu -3 308 1 343 345 40 23 chrX 86863399 86863576 -75736354 - MIR SINE MIR -82 180 1 559 311 46 41 chrX 86863683 86863786 -75736144 - MIR SINE MIR -3 259 158 890 223 43 114 chrX 86863786 86864181 -75735749 - MLT1A2 LTR MaLR -4 370 4 559 311 46 41 chrX 86864181 86864296 -75735634 - MIR SINE MIR -104 158 40 23 86 0 0 chrX 86864931 86864989 -75734941 + AT_rich Low_complexity Low_complexity 1 58 0 38 22 0 0 chrX 86865183 86865228 -75734702 + AT_rich Low_complexity Low_complexity 1 45 0 667 138 0 28 chrX 86865819 86865928 -75734002 + FLAM_C SINE Alu 23 128 -15 200 206 0 0 chrX 86866045 86866079 -75733851 + polypyrimidine Low_complexity Low_complexity 1 34 0 2712 222 26 22 chrX 86866153 86866798 -75733132 - MER82 DNA MER2_type -4 649 2 5082 169 0 19 chrX 86866905 86867578 -75732352 - L1PA15 LINE L1 -2 6163 5498 207 0 0 0 chrX 86867578 86867601 -75732329 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5082 169 0 19 chrX 86867601 86868003 -75731927 - L1PA15 LINE L1 -667 5498 5090 2423 242 18 11 chrX 86868804 86869313 -75730617 + MLT2B3 LTR ERVL 1 516 -38 240 35 0 0 chrX 86869313 86869342 -75730588 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2423 242 18 11 chrX 86869342 86869382 -75730548 + MLT2B3 LTR ERVL 516 554 0 6071 120 42 12 chrX 86870815 86871835 -75728095 - L1MA2 LINE L1 0 6304 5254 945 255 93 18 chrX 86872585 86872973 -75726957 + Charlie4a DNA MER1_type 2 418 -90 1661 145 3 77 chrX 86872984 86873357 -75726573 - MER4A LTR ERV1 0 664 261 580 121 10 20 chrX 86873357 86873456 -75726474 - MER4A LTR ERV1 -566 98 1 13245 121 52 71 chrX 86873483 86876297 -75723633 - MER4A-int LTR ERV1 -2 6596 3837 3288 171 76 25 chrX 86876296 86877174 -75722756 - MER4A-int LTR ERV1 -2917 3681 2759 * 900 180 218 0 chrX 86877180 86877391 -75722539 + LTR8 LTR ERV1 1 257 -434 3726 99 96 18 chrX 86877391 86878070 -75721860 - MER4A-int LTR ERV1 -4103 2495 1764 1424 125 42 27 chrX 86878067 86878342 -75721588 - MER4A-int LTR ERV1 -5573 1185 794 * 3966 156 12 24 chrX 86878363 86879030 -75720900 - MER4A-int LTR ERV1 -5911 847 189 1207 260 85 3 chrX 86879050 86879369 -75720561 - MER4A-int LTR ERV1 -4127 2204 1860 2519 124 172 8 chrX 86879540 86880089 -75719841 - MER4A-int LTR ERV1 -5912 686 1 1560 136 157 118 chrX 86880092 86880481 -75719449 - MER4A LTR ERV1 0 664 261 521 192 0 10 chrX 86880481 86880580 -75719350 - MER4A LTR ERV1 -566 98 1 312 262 0 12 chrX 86880580 86880663 -75719267 + Charlie4a DNA MER1_type 426 507 -1 3433 158 131 20 chrX 86880843 86882209 -75717721 - pTR5 LTR ERV1 0 2606 1524 224 206 82 41 chrX 86883029 86883102 -75716828 - L2 LINE L2 -88 3225 3150 1805 142 29 0 chrX 86883272 86883568 -75716362 + AluSx SINE Alu 1 304 0 21 0 0 0 chrX 86883670 86883691 -75716239 + AT_rich Low_complexity Low_complexity 1 21 0 13207 184 28 16 chrX 86883691 86888689 -75711241 - L1MA1 LINE L1 0 7721 2529 405 0 0 0 chrX 86888792 86888837 -75711093 + (CA)n Simple_repeat Simple_repeat 2 46 0 12896 205 36 15 chrX 86888850 86890984 -75708946 - L1PB1 LINE L1 -8 6859 4772 2116 114 0 29 chrX 86890984 86891291 -75708639 - AluSc SINE Alu -8 301 4 12896 205 36 15 chrX 86891291 86891531 -75708399 - L1PB1 LINE L1 -2095 4772 4539 1863 166 3 0 chrX 86891531 86891883 -75708047 - AluSx SINE Alu 0 353 1 12896 205 36 15 chrX 86891883 86896057 -75703873 - L1PB1 LINE L1 -2328 4539 3 10092 191 50 1 chrX 86896066 86896830 -75703100 - L1MA1 LINE L1 -5004 2561 1836 237 33 0 0 chrX 86896830 86896860 -75703070 + (TC)n Simple_repeat Simple_repeat 1 30 0 10092 191 50 1 chrX 86896860 86897980 -75701950 - L1MA1 LINE L1 -5729 1836 584 346 217 43 0 chrX 86898121 86898213 -75701717 + L1ME LINE L1 5713 5808 -354 31 44 0 0 chrX 86898587 86898632 -75701298 + AT_rich Low_complexity Low_complexity 1 45 0 3677 152 33 45 chrX 86899299 86899778 -75700152 + LTR62 LTR ERVK 6 476 -243 2555 46 0 0 chrX 86899778 86900082 -75699848 - AluY SINE Alu -7 304 1 3677 152 33 45 chrX 86900082 86900320 -75699610 + LTR62 LTR ERVK 476 715 -4 318 301 21 21 chrX 86902101 86902194 -75697736 - L2 LINE L2 -78 3194 3102 233 284 84 11 chrX 86904797 86904892 -75695038 - MIR SINE MIR -2 260 159 6720 76 1 8 chrX 86904893 86906561 -75693369 + L1PA8 LINE L1 4510 6172 0 26 74 0 0 chrX 86906586 86906640 -75693290 + AT_rich Low_complexity Low_complexity 1 54 0 305 366 0 9 chrX 86906676 86906788 -75693142 - MIR SINE MIR -150 112 2 549 316 76 17 chrX 86906834 86907071 -75692859 - MIR SINE MIR -7 255 5 348 279 98 66 chrX 86907304 86907548 -75692382 - L2 LINE L2 -28 3285 3034 1460 244 123 34 chrX 86907661 86908132 -75691798 - MLT1E LTR MaLR -73 520 8 185 0 40 0 chrX 86908158 86908183 -75691747 + (TA)n Simple_repeat Simple_repeat 1 26 0 2928 216 55 19 chrX 86908665 86909405 -75690525 + L1MC3 LINE L1 5384 6150 -1635 24 53 0 0 chrX 86909417 86909455 -75690475 + AT_rich Low_complexity Low_complexity 1 38 0 1113 116 33 0 chrX 86909853 86910034 -75689896 + L1MA6 LINE L1 6114 6300 0 26 64 0 0 chrX 86910456 86910503 -75689427 + AT_rich Low_complexity Low_complexity 1 47 0 223 321 12 0 chrX 86910631 86910715 -75689215 - MIR SINE MIR -2 260 176 6383 164 43 3 chrX 86911407 86912815 -75687115 - L1MA1 LINE L1 0 6302 4832 11685 188 9 43 chrX 86912912 86913065 -75686865 + ERVL-B2 LTR ERVL 3505 3662 -2102 2106 218 24 5 chrX 86913065 86913483 -75686447 + MSTB LTR MaLR 1 426 0 11685 188 9 43 chrX 86913483 86914245 -75685685 + ERVL-B2 LTR ERVL 3662 4448 -1316 2002 211 16 23 chrX 86914245 86914680 -75685250 + MSTB1 LTR MaLR 1 432 0 11685 188 9 43 chrX 86914680 86916092 -75683838 + ERVL-B2 LTR ERVL 4448 5755 -9 1837 224 116 9 chrX 86916094 86916541 -75683389 + MLT2B2 LTR ERVL 1 495 -20 252 174 0 0 chrX 86916541 86916587 -75683343 + MLT2B2 LTR ERVL 464 509 -6 610 58 0 0 chrX 86916647 86916733 -75683197 - L1MA1 LINE L1 -4 6298 6213 195 324 127 12 chrX 86916891 86917064 -75682866 + L2 LINE L2 3121 3313 0 21 36 0 0 chrX 86917212 86917240 -75682690 + AT_rich Low_complexity Low_complexity 1 28 0 2326 279 61 13 chrX 86917258 86918113 -75681817 + L1MEc LINE L1 255 940 -4968 1296 122 0 0 chrX 86918178 86918358 -75681572 + AluSg/x SINE Alu 110 289 -20 310 204 10 87 chrX 86918358 86918461 -75681469 + L1MC4 LINE L1 6609 6703 -1339 341 253 23 0 chrX 86918472 86918559 -75681371 + L1MC4 LINE L1 6615 6703 -1339 555 265 96 48 chrX 86918561 86918584 -75681346 + L1MEc LINE L1 1277 1297 -5129 1528 221 14 19 chrX 86918584 86918951 -75680979 + MLT1A1 LTR MaLR 1 365 0 555 265 96 48 chrX 86918951 86919235 -75680695 + L1MEc LINE L1 1297 1554 -4872 1363 247 76 83 chrX 86919258 86919556 -75680374 - MLT1F1 LTR MaLR -4 563 244 3718 164 110 17 chrX 86919556 86920312 -75679618 + LTR1B LTR ERV1 1 826 0 1363 247 76 83 chrX 86920312 86920555 -75679375 - MLT1F1 LTR MaLR -323 244 1 384 272 5 82 chrX 86920573 86920768 -75679162 + L1MEc LINE L1 1428 1607 -4819 296 280 20 0 chrX 86920825 86920925 -75679005 + L1M4 LINE L1 3827 3928 -2218 558 224 67 11 chrX 86921891 86922073 -75677857 - L1MC3 LINE L1 -2 7764 6129 2033 196 43 20 chrX 86922103 86922593 -75677337 - L1MB8 LINE L1 -4 6174 5674 1184 238 90 6 chrX 86922598 86922909 -75677021 + MLT2C1 LTR ERVL 5 341 -56 276 337 17 12 chrX 86922959 86923131 -75676799 + MERVL LTR ERVL 765 937 -4548 69 72 0 0 chrX 86923156 86923295 -75676635 + AT_rich Low_complexity Low_complexity 1 139 0 514 263 18 0 chrX 86923295 86923409 -75676521 + MERVL LTR ERVL 1062 1177 -4587 * 7255 242 51 5 chrX 86923389 86925076 -75674854 + MERVL LTR ERVL 1851 3615 -2149 2150 259 20 67 chrX 86925079 86926006 -75673924 - L1M4b LINE L1 -1958 4999 4116 210 71 0 0 chrX 86926038 86926066 -75673864 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 618 189 0 0 chrX 86926066 86926177 -75673753 - FLAM_C SINE Alu -24 119 9 2594 248 54 49 chrX 86926185 86926567 -75673363 - L1M4b LINE L1 -2851 4106 3727 1540 106 8 0 chrX 86926567 86926804 -75673126 - L1MA3 LINE L1 0 6305 6067 2594 248 54 49 chrX 86926804 86926933 -75672997 - L1M4b LINE L1 -3230 3727 3600 2177 124 0 0 chrX 86926933 86927231 -75672699 - AluSg SINE Alu -12 298 1 2594 248 54 49 chrX 86927231 86928245 -75671685 - L1M4b LINE L1 -3357 3600 2623 22 35 0 0 chrX 86928249 86928278 -75671652 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chrX 86928319 86928355 -75671575 + AT_rich Low_complexity Low_complexity 1 36 0 254 224 24 94 chrX 86928786 86928871 -75671059 + LTR25 LTR ERV1 280 358 -436 254 284 0 95 chrX 86928873 86928968 -75670962 + MER61E LTR ERV1 100 185 -384 916 142 32 1 chrX 86929050 86929233 -75670697 + MER61E LTR ERV1 340 774 -20 3315 287 106 35 chrX 86929250 86931414 -75668516 - L1M4b LINE L1 -4628 2331 6 2313 53 7 13 chrX 86931431 86931733 -75668197 + AluY SINE Alu 1 300 -11 1373 197 21 4 chrX 86931733 86932012 -75667918 - L1MC3 LINE L1 -198 7587 7304 3209 242 91 118 chrX 86932016 86933683 -75666247 - L1MCb LINE L1 -4785 1779 1 2202 105 3 7 chrX 86934182 86934478 -75665452 + AluSp SINE Alu 1 295 -18 1887 140 25 69 chrX 86934787 86935125 -75664805 - THE1C LTR MaLR 0 375 55 2780 123 75 6 chrX 86935125 86935603 -75664327 + MER9 LTR ERVK 1 511 0 1887 140 25 69 chrX 86935603 86935656 -75664274 - THE1C LTR MaLR -320 55 1 283 213 25 25 chrX 86935717 86935797 -75664133 + MIR SINE MIR 183 262 0 944 275 134 10 chrX 86935856 86936209 -75663721 + MSTD LTR MaLR 4 394 -2 258 270 70 0 chrX 86936212 86936312 -75663618 + L1MC4a LINE L1 5556 5662 -459 44 20 0 0 chrX 86936312 86936363 -75663567 + AT_rich Low_complexity Low_complexity 1 51 0 688 283 57 16 chrX 86936388 86936719 -75663211 + MLT1E1 LTR MaLR 1 392 -262 789 208 13 0 chrX 86936774 86936928 -75663002 + AluSg/x SINE Alu 155 310 0 2509 254 55 43 chrX 86936996 86937771 -75662159 + L1MB7 LINE L1 8 792 -5750 320 293 29 0 chrX 86937768 86937942 -75661988 + L1MB7 LINE L1 3263 3441 -3203 * 325 231 154 28 chrX 86937938 86938081 -75661849 + L1MB7 LINE L1 4129 4289 -2355 3806 155 65 9 chrX 86938083 86938755 -75661175 + MER50 LTR ERV1 1 710 -24 2712 259 72 16 chrX 86938764 86940014 -75659916 + L1MB7 LINE L1 4295 5474 -1208 2423 62 0 16 chrX 86940014 86940319 -75659611 - AluY SINE Alu -11 300 1 2712 259 72 16 chrX 86940319 86940643 -75659287 + L1MB7 LINE L1 5474 5779 -903 204 97 0 0 chrX 86940643 86940674 -75659256 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2712 259 72 16 chrX 86940674 86941086 -75658844 + L1MB7 LINE L1 5779 6401 -281 1504 192 23 169 chrX 86941086 86941607 -75658323 + MER21A LTR ERV1 1 445 -486 287 259 48 24 chrX 86941712 86941878 -75658052 + L1ME4a LINE L1 5884 6053 -68 828 271 20 10 chrX 86941990 86942193 -75657737 + MLT1E1 LTR MaLR 450 654 0 324 333 8 0 chrX 86942194 86942311 -75657619 + L1MC4a LINE L1 5769 5886 -1922 389 313 14 20 chrX 86942404 86942551 -75657379 - MLT1L LTR MaLR -36 579 434 421 313 108 23 chrX 86942577 86942791 -75657139 - MIR SINE MIR 0 262 31 626 267 114 25 chrX 86943232 86943468 -75656462 - MIR SINE MIR -3 259 3 22 35 0 0 chrX 86943624 86943653 -75656277 + AT_rich Low_complexity Low_complexity 1 29 0 269 311 55 70 chrX 86943819 86944005 -75655925 - MIR SINE MIR -56 206 18 246 316 48 42 chrX 86944217 86944385 -75655545 + PABL_B LTR ERV1 1 169 -498 760 202 123 18 chrX 86944429 86944657 -75655273 + PABL_B LTR ERV1 416 667 0 2324 151 129 59 chrX 86944757 86945314 -75654616 + LTR4 LTR ERV1 1 596 0 345 245 84 39 chrX 86945357 86945512 -75654418 + LTR43 LTR ERV1 184 345 -257 323 148 49 0 chrX 86945550 86945611 -75654319 + LTR35 LTR ERV1 471 534 -84 1968 228 23 37 chrX 86945611 86946139 -75653791 + MLT2B3 LTR ERVL 1 409 -44 247 132 44 15 chrX 86946188 86946256 -75653674 + (TA)n Simple_repeat Simple_repeat 1 70 0 291 125 88 6 chrX 86946269 86946429 -75653501 + (TA)n Simple_repeat Simple_repeat 2 174 0 31 44 0 0 chrX 86946447 86946492 -75653438 + AT_rich Low_complexity Low_complexity 1 45 0 312 136 53 15 chrX 86946492 86946624 -75653306 + (TA)n Simple_repeat Simple_repeat 1 137 0 310 253 0 42 chrX 86946625 86946720 -75653210 + L1MC4 LINE L1 6614 6704 -1338 335 286 0 0 chrX 86946736 86946827 -75653103 + L1MC4 LINE L1 6615 6705 -1337 560 155 25 0 chrX 86946827 86946988 -75652942 + (TA)n Simple_repeat Simple_repeat 2 166 0 307 172 0 17 chrX 86946989 86947047 -75652883 + MLT2B3 LTR ERVL 397 453 0 * 619 140 0 11 chrX 86947047 86947137 -75652793 + LTR35 LTR ERV1 530 618 0 1972 147 16 0 chrX 86947239 86947546 -75652384 + AluSx SINE Alu 1 312 0 2298 176 70 50 chrX 86947833 86948317 -75651613 - LTR26B LTR ERV1 -37 494 1 1473 161 50 50 chrX 86948480 86948822 -75651108 + MER4A LTR ERV1 1 342 -322 432 153 266 16 chrX 86948970 86949094 -75650836 + MER4C LTR ERV1 291 445 -20 1246 231 116 54 chrX 86949094 86949786 -75650144 + MER61E LTR ERV1 1 777 -2 2290 153 135 41 chrX 86949883 86950400 -75649530 - LTR49 LTR ERV1 -29 566 1 664 269 5 46 chrX 86950468 86950684 -75649246 + MLT1E1 LTR MaLR 448 654 0 40 72 0 18 chrX 86951002 86951043 -75648887 + AT_rich Low_complexity Low_complexity 1 41 -68 1367 182 93 11 chrX 86951043 86951312 -75648618 - AluJb SINE Alu -21 291 1 40 72 0 18 chrX 86951312 86951381 -75648549 + AT_rich Low_complexity Low_complexity 41 109 0 1107 293 84 61 chrX 86951394 86951667 -75648263 + L1ME3A LINE L1 3898 4163 -1983 2375 86 0 0 chrX 86951667 86951971 -75647959 - AluSq SINE Alu -9 304 1 1107 293 84 61 chrX 86951971 86952015 -75647915 + L1ME3A LINE L1 4163 4204 -1942 1765 195 3 0 chrX 86952015 86952317 -75647613 - AluJb SINE Alu -9 303 1 1107 293 84 61 chrX 86952317 86952550 -75647380 + L1ME3A LINE L1 4204 4430 -1716 1999 95 21 7 chrX 86952550 86952867 -75647063 - AluY SINE Alu 0 311 1 1107 293 84 61 chrX 86952867 86953627 -75646303 + L1ME3A LINE L1 4430 5241 -905 1732 198 31 33 chrX 86953735 86954160 -75645770 - MLT2D LTR ERVL 0 464 10 693 277 32 25 chrX 86954434 86954716 -75645214 + L1ME3A LINE L1 5668 5951 -219 384 281 47 23 chrX 86955998 86956126 -75643804 + MIR SINE MIR 122 252 -10 378 284 63 0 chrX 86956315 86956410 -75643520 + MER99 DNA DNA 1 101 -727 39 92 0 0 chrX 86956647 86956756 -75643174 + AT_rich Low_complexity Low_complexity 1 109 0 2226 236 69 20 chrX 86957094 86957699 -75642231 + MER99 DNA DNA 192 826 -2 265 124 83 18 chrX 86957893 86958062 -75641868 + (TA)n Simple_repeat Simple_repeat 1 180 0 502 107 88 0 chrX 86958104 86958263 -75641667 + (TA)n Simple_repeat Simple_repeat 1 173 0 25 65 0 0 chrX 86958481 86958527 -75641403 + AT_rich Low_complexity Low_complexity 1 46 0 1533 176 22 6 chrX 86958734 86959225 -75640705 + LTR27 LTR ERV1 1 501 0 518 110 0 0 chrX 86959253 86959326 -75640604 + Alu SINE Alu 226 298 -11 222 113 0 57 chrX 86959342 86959395 -75640535 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 224 271 0 0 chrX 86960135 86960183 -75639747 - L2 LINE L2 -12 3260 3213 1113 219 8 61 chrX 86962063 86962437 -75637493 + MER31B LTR ERV1 1 466 0 1339 128 44 0 chrX 86962989 86963192 -75636738 - MER30 DNA MER1_type -18 212 1 21 71 0 0 chrX 86963414 86963456 -75636474 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chrX 86963599 86963621 -75636309 + AT_rich Low_complexity Low_complexity 1 22 0 383 167 0 0 chrX 86963793 86963853 -75636077 + L1PB3 LINE L1 5818 5877 -277 3647 163 33 35 chrX 86963853 86964589 -75635341 + MER50 LTR ERV1 1 734 0 3862 160 42 33 chrX 86964589 86966115 -75633815 + MER50-int LTR ERV1 1 1712 -5493 2226 98 10 7 chrX 86966115 86966425 -75633505 - AluSp SINE Alu 0 311 1 3862 160 42 33 chrX 86966425 86966565 -75633365 + MER50-int LTR ERV1 1712 1849 -5356 * 8196 212 30 18 chrX 86966562 86968346 -75631584 + MER50-int LTR ERV1 2788 4593 -2612 1718 101 0 0 chrX 86968352 86968589 -75631341 - THE1A-int LTR MaLR -1138 442 206 1784 142 17 10 chrX 86968595 86968890 -75631040 - THE1A LTR MaLR -58 297 1 330 115 37 7 chrX 86968890 86968958 -75630972 + MER50-int LTR ERV1 4381 4447 -1499 * 6920 114 29 42 chrX 86968948 86970103 -75629827 + MER50-int LTR ERV1 5059 6198 -1007 1461 121 8 15 chrX 86970103 86970368 -75629562 + MER50-int LTR ERV1 6849 7197 -8 1657 157 29 0 chrX 86970368 86970648 -75629282 + MER50 LTR ERV1 1 288 -446 640 131 0 10 chrX 86970649 86970748 -75629182 + MER4A LTR ERV1 1 98 -566 1932 128 171 20 chrX 86970748 86971099 -75628831 + MER4A LTR ERV1 261 664 0 11413 118 118 45 chrX 86971102 86973436 -75626494 + MER4A-int LTR ERV1 1 2503 -4095 1197 194 5 0 chrX 86973442 86973658 -75626272 - LTR8 LTR ERV1 -474 217 1 1563 160 70 3 chrX 86973658 86974046 -75625884 + MER4A-int LTR ERV1 2737 3150 -3448 1418 174 45 34 chrX 86974074 86974453 -75625477 + MER4A-int LTR ERV1 3304 3686 -2912 192 40 0 0 chrX 86974463 86974488 -75625442 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 30508 110 8 25 chrX 86974488 86975152 -75624778 - L1PA7 LINE L1 -18 6451 5778 2387 83 0 3 chrX 86975152 86975453 -75624477 - AluSc SINE Alu -6 303 4 30508 110 8 25 chrX 86975453 86981243 -75618687 - L1PA7 LINE L1 -691 5778 1 10302 118 43 21 chrX 86981244 86983083 -75616847 + MER4A-int LTR ERV1 3845 5724 -874 1448 143 5 9 chrX 86983083 86983307 -75616623 + MER4A LTR ERV1 442 664 0 2056 202 24 7 chrX 86983307 86983722 -75616208 + MER50 LTR ERV1 290 711 -23 1646 174 0 4 chrX 86983723 86983998 -75615932 + L1PB3 LINE L1 5879 6152 -2 1579 209 0 20 chrX 86984340 86984641 -75615289 - AluJo SINE Alu -17 295 1 2004 134 0 10 chrX 86984757 86985047 -75614883 - AluSx SINE Alu -25 287 1 2287 83 0 42 chrX 86985100 86985412 -75614518 - AluY SINE Alu -8 303 5 29 0 0 0 chrX 86985564 86985593 -75614337 + AT_rich Low_complexity Low_complexity 1 29 0 260 350 36 29 chrX 86986345 86986485 -75613445 - L2 LINE L2 -31 3241 3101 17073 194 40 25 chrX 86986716 86991685 -75608245 + L1M1 LINE L1 17 5122 -2578 216 0 0 0 chrX 86991685 86991709 -75608221 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 17073 194 40 25 chrX 86991709 86993574 -75606356 + L1M1 LINE L1 5122 6957 -743 1144 221 42 26 chrX 86993582 86993889 -75606041 + L1MD1 LINE L1 5772 6083 -159 291 93 0 0 chrX 86993900 86993943 -75605987 + (TG)n Simple_repeat Simple_repeat 2 44 0 415 258 125 22 chrX 86993989 86994358 -75605572 + L1MC/D LINE L1 2234 2640 -3506 280 314 21 0 chrX 86994364 86994504 -75605426 + (TA)n Simple_repeat Simple_repeat 2 144 0 326 230 0 7 chrX 86994530 86994669 -75605261 + (TA)n Simple_repeat Simple_repeat 2 139 0 7015 229 31 29 chrX 86994692 86997248 -75602682 + L1MA9 LINE L1 3393 5940 -372 254 103 0 0 chrX 86997345 86997384 -75602546 + L1PA7 LINE L1 6110 6148 -6 10272 174 23 65 chrX 86997468 86999539 -75600391 - L1PA15-16 LINE L1 -4862 1987 5 450 311 34 77 chrX 86999931 87000371 -75599559 - L1M4 LINE L1 -2162 3984 3564 2144 263 17 10 chrX 87000392 87001100 -75598830 + L1MC/D LINE L1 3032 3744 -2402 31 44 0 0 chrX 87001310 87001355 -75598575 + AT_rich Low_complexity Low_complexity 1 45 0 1303 223 50 14 chrX 87001484 87001762 -75598168 - AluJo SINE Alu -24 288 1 767 325 52 51 chrX 87001805 87002491 -75597439 + L1MC/D LINE L1 4020 4706 -1440 320 204 49 21 chrX 87002509 87002651 -75597279 + (TA)n Simple_repeat Simple_repeat 1 146 0 637 327 65 20 chrX 87002666 87002914 -75597016 + LTR33 LTR ERVL 26 284 -237 1769 324 62 15 chrX 87003295 87004073 -75595857 + ERVL LTR ERVL 3418 4231 -1533 268 333 26 36 chrX 87004266 87004458 -75595472 + L1MC/D LINE L1 5600 5789 -2019 21 0 0 0 chrX 87004467 87004488 -75595442 + AT_rich Low_complexity Low_complexity 1 21 0 1815 207 56 25 chrX 87005105 87005549 -75594381 - LOR1b LTR ERV1 -3 458 1 322 256 33 11 chrX 87005626 87005716 -75594214 - MER5A DNA MER1_type -2 187 96 737 207 55 12 chrX 87006111 87006275 -75593655 - MER5B DNA MER1_type -6 172 2 248 355 57 28 chrX 87007337 87007478 -75592452 - L2 LINE L2 -1 3312 3168 * 1330 295 83 6 chrX 87007477 87007948 -75591982 - L2 LINE L2 -1028 2286 1780 1834 113 0 0 chrX 87008467 87008715 -75591215 + AluSc SINE Alu 39 286 -23 1630 193 35 11 chrX 87009034 87009381 -75590549 + MLT1A1 LTR MaLR 1 355 -10 2179 106 3 7 chrX 87009477 87009778 -75590152 + AluSg SINE Alu 1 300 -10 219 289 0 0 chrX 87009778 87009830 -75590100 + MIR SINE MIR 24 75 -187 32 43 0 0 chrX 87009999 87010045 -75589885 + AT_rich Low_complexity Low_complexity 1 46 0 1053 176 66 96 chrX 87010347 87010619 -75589311 + LOR1b LTR ERV1 1 258 -203 2261 86 3 13 chrX 87010619 87010922 -75589008 - AluY SINE Alu 0 311 12 537 241 103 0 chrX 87011206 87011351 -75588579 + MLT1A1 LTR MaLR 465 624 0 21 57 0 0 chrX 87011393 87011428 -75588502 + AT_rich Low_complexity Low_complexity 1 35 0 198 103 0 0 chrX 87011653 87011682 -75588248 + (A)n Simple_repeat Simple_repeat 1 29 0 252 231 0 0 chrX 87013407 87013459 -75586471 + LTR30 LTR ERV1 1 52 -670 565 191 9 17 chrX 87013459 87013574 -75586356 + LTR12 LTR ERV1 53 166 -548 841 117 13 180 chrX 87013574 87013813 -75586117 + LTR12 LTR ERV1 76 274 -440 324 283 10 0 chrX 87013816 87013915 -75586015 + LTR30 LTR ERV1 544 643 -79 728 98 0 0 chrX 87013916 87014018 -75585912 + LTR12 LTR ERV1 481 582 -132 224 255 10 29 chrX 87014275 87014377 -75585553 + (TATG)n Simple_repeat Simple_repeat 4 103 0 2102 116 0 26 chrX 87014679 87014990 -75584940 - AluSg SINE Alu -7 303 1 4899 209 42 11 chrX 87014994 87016067 -75583863 - L1MC3 LINE L1 -110 7675 6570 207 0 0 0 chrX 87016087 87016110 -75583820 + (TG)n Simple_repeat Simple_repeat 2 24 0 1232 256 43 28 chrX 87016111 87016463 -75583467 + MSTD LTR MaLR 40 396 0 2728 217 58 52 chrX 87016463 87017437 -75582493 - L1M4c LINE L1 -4517 2048 1039 249 228 18 0 chrX 87017431 87017488 -75582442 - L1M4c LINE L1 -5833 709 652 * 365 343 93 42 chrX 87017834 87018070 -75581860 - L1M4c LINE L1 -6293 249 2 192 179 0 0 chrX 87018429 87018468 -75581462 + (TTA)n Simple_repeat Simple_repeat 1 39 0 22 56 0 0 chrX 87018505 87018541 -75581389 + AT_rich Low_complexity Low_complexity 1 36 0 260 231 0 0 chrX 87019099 87019151 -75580779 + LTR30 LTR ERV1 1 52 -670 660 218 8 77 chrX 87019151 87019385 -75580545 + LTR12 LTR ERV1 53 270 -444 378 214 42 0 chrX 87019385 87019491 -75580439 + LTR30 LTR ERV1 544 643 -79 671 119 0 0 chrX 87019492 87019593 -75580337 + LTR12 LTR ERV1 481 581 -133 29 70 0 0 chrX 87019713 87019770 -75580160 + AT_rich Low_complexity Low_complexity 1 57 0 375 248 134 13 chrX 87020193 87020342 -75579588 + MER58C DNA MER1_type 48 214 -1 395 278 187 16 chrX 87020954 87021141 -75578789 + MIR SINE MIR 39 257 -5 943 238 32 69 chrX 87021337 87021614 -75578316 + MLT2B1 LTR ERVL 1 267 -253 16532 190 31 20 chrX 87021618 87024826 -75575104 + ERVL-B1 LTR ERVL 2510 5753 -11 1404 245 88 25 chrX 87024833 87025284 -75574646 + MLT2B1 LTR ERVL 4 387 -27 26 30 0 0 chrX 87025926 87025959 -75573971 + AT_rich Low_complexity Low_complexity 1 33 0 360 299 104 55 chrX 87026496 87026697 -75573233 + MIR SINE MIR 49 259 -3 1620 142 76 44 chrX 87026992 87027336 -75572594 + THE1C LTR MaLR 1 355 -20 2399 77 0 6 chrX 87027384 87027696 -75572234 - AluY SINE Alu -1 310 1 413 273 167 15 chrX 87027698 87028230 -75571700 + L1M4 LINE L1 4633 5245 -901 508 57 57 0 chrX 87028250 87028320 -75571610 + MADE1 DNA Mariner 6 79 -1 1097 291 149 19 chrX 87028468 87028897 -75571033 + L2 LINE L2 2621 3152 -161 1494 224 7 47 chrX 87028897 87029303 -75570627 - MLT1B LTR MaLR 0 390 1 1097 291 149 19 chrX 87029303 87029488 -75570442 + L2 LINE L2 3152 3312 -1 369 302 157 38 chrX 87029602 87029761 -75570169 - MER5A DNA MER1_type -1 188 11 24 67 0 0 chrX 87030430 87030475 -75569455 + AT_rich Low_complexity Low_complexity 1 45 0 2224 194 48 69 chrX 87031143 87031793 -75568137 - MER92B LTR ERV1 0 636 1 218 352 78 35 chrX 87031799 87031941 -75567989 - MIR3 SINE MIR -28 180 33 455 204 19 83 chrX 87031962 87032119 -75567811 - MER69 DNA AcHobo -9 2517 2371 4941 174 15 12 chrX 87032119 87032647 -75567283 + L1PA16 LINE L1 5199 5730 -436 5856 57 30 22 chrX 87032647 87033421 -75566509 + LTR17 LTR ERV1 1 780 0 4941 174 15 12 chrX 87033421 87033852 -75566078 + L1PA16 LINE L1 5730 6158 -8 1383 202 120 16 chrX 87033901 87034400 -75565530 - MER69 DNA AcHobo -268 2258 1708 430 210 30 20 chrX 87034411 87034511 -75565419 - MER69 DNA AcHobo -1625 901 801 756 302 36 5 chrX 87034517 87034739 -75565191 - MER69 DNA AcHobo -1994 532 304 195 114 0 0 chrX 87035563 87035598 -75564332 + (T)n Simple_repeat Simple_repeat 1 35 0 13208 173 21 28 chrX 87035702 87036535 -75563395 + L1PA13 LINE L1 2341 3179 -2984 1740 188 3 0 chrX 87036535 87036843 -75563087 + AluSx SINE Alu 1 309 -3 13208 173 21 28 chrX 87036843 87036863 -75563067 + L1PA13 LINE L1 3179 3198 -2965 1878 170 0 0 chrX 87036863 87037174 -75562756 + AluSx SINE Alu 1 311 -1 13208 173 21 28 chrX 87037174 87038451 -75561479 + L1PA13 LINE L1 3198 4483 -1680 2337 93 0 6 chrX 87038451 87038764 -75561166 + AluSx SINE Alu 1 311 -1 13208 173 21 28 chrX 87038764 87038845 -75561085 + L1PA13 LINE L1 4483 4563 -1600 2439 47 13 0 chrX 87038845 87039144 -75560786 + AluY SINE Alu 6 308 -3 13208 173 21 28 chrX 87039144 87040611 -75559319 + L1PA13 LINE L1 4563 5959 -204 2097 121 0 0 chrX 87040611 87040900 -75559030 + AluSg SINE Alu 1 289 -21 13208 173 21 28 chrX 87040900 87041104 -75558826 + L1PA13 LINE L1 5959 6163 0 1645 241 91 49 chrX 87041260 87041829 -75558101 - MLT1E LTR MaLR 0 593 1 22 56 0 0 chrX 87042130 87042166 -75557764 + AT_rich Low_complexity Low_complexity 1 36 0 40 21 0 0 chrX 87043537 87043584 -75556346 + AT_rich Low_complexity Low_complexity 1 47 0 1326 208 84 4 chrX 87043584 87043858 -75556072 - AluJb SINE Alu -16 296 1 2239 87 0 0 chrX 87043907 87044195 -75555735 + AluY SINE Alu 1 288 -23 21 57 0 0 chrX 87046505 87046540 -75553390 + AT_rich Low_complexity Low_complexity 1 35 0 354 314 130 18 chrX 87047311 87047649 -75552281 + L1ME4a LINE L1 5732 6107 -14 327 25 0 0 chrX 87048071 87048111 -75551819 + (TG)n Simple_repeat Simple_repeat 1 40 0 3397 217 73 18 chrX 87049119 87049844 -75550086 + L1MB7 LINE L1 5028 5837 -347 1801 195 40 0 chrX 87049844 87050193 -75549737 - MLT1A1 LTR MaLR -2 363 1 3397 217 73 18 chrX 87050193 87050553 -75549377 + L1MB7 LINE L1 5837 6176 -8 27 0 0 0 chrX 87051369 87051396 -75548534 + AT_rich Low_complexity Low_complexity 1 27 0 422 263 89 73 chrX 87051704 87051850 -75548080 - L2 LINE L2 0 3313 3160 198 0 0 0 chrX 87051850 87051872 -75548058 + (TA)n Simple_repeat Simple_repeat 1 22 0 422 263 89 73 chrX 87051872 87051984 -75547946 - L2 LINE L2 -153 3160 3051 2838 294 130 39 chrX 87052043 87053592 -75546338 - L2 LINE L2 -453 2861 1171 591 211 37 0 chrX 87053777 87053886 -75546044 + FLAM_A SINE Alu 3 115 -18 338 206 1 97 chrX 87054071 87054189 -75545741 - L1M4 LINE L1 -540 5581 5476 306 293 101 74 chrX 87054218 87054515 -75545415 - L1M4 LINE L1 -1103 5043 4739 468 206 123 78 chrX 87054525 87054729 -75545201 + L2 LINE L2 3101 3313 0 614 263 102 68 chrX 87054773 87055462 -75544468 - L1M4 LINE L1 -1438 4708 3997 29 0 0 0 chrX 87055570 87055599 -75544331 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chrX 87055828 87055857 -75544073 + AT_rich Low_complexity Low_complexity 1 29 0 2071 102 0 17 chrX 87055895 87056245 -75543685 - AluY SINE Alu 0 311 1 247 276 0 0 chrX 87056493 87056551 -75543379 + (CATA)n Simple_repeat Simple_repeat 3 60 0 192 40 0 0 chrX 87056552 87056577 -75543353 + (GA)n Simple_repeat Simple_repeat 2 26 0 1158 180 0 39 chrX 87056588 87056821 -75543109 - Tigger5 DNA MER2_type -15 2308 2085 1253 212 56 32 chrX 87056936 87057275 -75542655 - MER7A DNA MER2_type -1 345 1 252 0 0 0 chrX 87057290 87057318 -75542612 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 261 0 0 0 chrX 87057317 87057346 -75542584 + (CA)n Simple_repeat Simple_repeat 2 30 0 1345 200 56 87 chrX 87057467 87057901 -75542029 + MER66A LTR ERV1 97 478 0 10108 192 48 30 chrX 87057901 87060023 -75539907 + MER66A-int LTR ERV1 1 2160 -4516 12436 135 20 6 chrX 87060045 87060504 -75539426 + L1PA10 LINE L1 3044 3495 -2673 180 0 0 0 chrX 87060504 87060524 -75539406 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 12436 135 20 6 chrX 87060524 87063138 -75536792 + L1PA10 LINE L1 3495 6165 -3 7203 188 111 96 chrX 87063168 87065700 -75534230 + MER66A-int LTR ERV1 2348 4918 -1758 324 172 16 0 chrX 87065702 87065766 -75534164 + MER66A-int LTR ERV1 4877 4941 -1735 * 1487 183 51 0 chrX 87065755 87066028 -75533902 + MER66A-int LTR ERV1 6390 6676 0 621 225 94 9 chrX 87066096 87066306 -75533624 + MER66A LTR ERV1 97 420 -215 412 296 57 53 chrX 87066335 87066636 -75533294 - L1M4 LINE L1 -2161 3985 3684 600 377 88 26 chrX 87066734 87067562 -75532368 + L2 LINE L2 2180 3059 -213 180 329 13 13 chrX 87068015 87068091 -75531839 - MIR SINE MIR 0 262 187 4301 228 53 24 chrX 87069200 87070097 -75529833 - L1MB3 LINE L1 0 6183 5314 1098 245 39 19 chrX 87070097 87070460 -75529470 + MLT1A2 LTR MaLR 1 370 -4 4301 228 53 24 chrX 87070460 87071428 -75528502 - L1MB3 LINE L1 -869 5314 4376 234 0 0 0 chrX 87071428 87071454 -75528476 + (TG)n Simple_repeat Simple_repeat 2 27 0 4301 228 53 24 chrX 87071454 87071622 -75528308 - L1MB3 LINE L1 -1807 4376 4214 1786 235 2 12 chrX 87071622 87072022 -75527908 + MSTD LTR MaLR 1 396 0 4301 228 53 24 chrX 87072022 87072240 -75527690 - L1MB3 LINE L1 -1969 4214 3876 10005 174 16 25 chrX 87072266 87075241 -75524689 - L1PA13 LINE L1 -6 7595 4648 3646 208 15 17 chrX 87075229 87076366 -75523564 - L1PA13 LINE L1 -4024 3560 2405 * 8530 215 15 2 chrX 87076369 87077925 -75522005 - L1PA13 LINE L1 -5996 1585 9 1370 238 17 30 chrX 87077935 87078242 -75521688 - L1MB3 LINE L1 -2298 3848 3539 1747 149 78 94 chrX 87078242 87078432 -75521498 + MSTA LTR MaLR 1 193 -235 2090 111 50 3 chrX 87078432 87078729 -75521201 + AluY SINE Alu 1 311 0 1747 149 78 94 chrX 87078729 87078973 -75520957 + MSTA LTR MaLR 193 428 0 8035 162 33 42 chrX 87078975 87079486 -75520444 + MSTA-int LTR MaLR 3 517 -1063 234 0 0 0 chrX 87079486 87079512 -75520418 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 8035 162 33 42 chrX 87079512 87080593 -75519337 + MSTA-int LTR MaLR 517 1580 0 2029 154 88 15 chrX 87080595 87080992 -75518938 + MSTA LTR MaLR 3 428 0 1370 238 17 30 chrX 87080992 87081141 -75518789 - L1MB3 LINE L1 -2609 3537 3392 1916 165 3 0 chrX 87081511 87081820 -75518110 - AluSx SINE Alu -2 310 1 1428 275 129 11 chrX 87082252 87082812 -75517118 + MLT1E2 LTR MaLR 1 626 0 23 54 0 0 chrX 87083024 87083061 -75516869 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chrX 87083211 87083242 -75516688 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 87083711 87083732 -75516198 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chrX 87083975 87084005 -75515925 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 87084499 87084524 -75515406 + AT_rich Low_complexity Low_complexity 1 25 0 2446 65 0 3 chrX 87084694 87085001 -75514929 - AluY SINE Alu -5 306 1 2441 140 58 22 chrX 87085312 87085761 -75514169 + MER4C LTR ERV1 1 465 0 232 388 15 8 chrX 87085996 87086130 -75513800 + MIR SINE MIR 81 215 -47 22 70 0 0 chrX 87086193 87086236 -75513694 + AT_rich Low_complexity Low_complexity 1 43 0 3084 140 40 37 chrX 87086846 87087217 -75512713 - MER4B LTR ERV1 -36 574 199 2778 19 0 0 chrX 87087217 87087532 -75512398 - AluYb8 SINE Alu -3 315 1 3084 140 40 37 chrX 87087532 87087730 -75512200 - MER4B LTR ERV1 -411 199 3 26 0 0 0 chrX 87087825 87087851 -75512079 + AT_rich Low_complexity Low_complexity 1 26 0 1307 270 57 75 chrX 87088285 87089007 -75510923 - L1ME3A LINE L1 0 6170 5462 1691 295 62 46 chrX 87089011 87090735 -75509195 + L1ME LINE L1 2409 4159 -1987 957 289 71 19 chrX 87090877 87091517 -75508413 + L1ME LINE L1 4961 5643 -519 1389 279 65 17 chrX 87091682 87092162 -75507768 + LTR40a LTR ERVL 1 503 -16 1731 163 171 8 chrX 87092162 87092530 -75507400 + MSTA LTR MaLR 1 428 0 8584 162 9 39 chrX 87092533 87094160 -75505770 + MSTA-int LTR MaLR 3 1580 0 1637 176 165 8 chrX 87094160 87094530 -75505400 + MSTA LTR MaLR 1 428 0 205 388 72 26 chrX 87094687 87095076 -75504854 + L2 LINE L2 2266 2672 -642 25 0 0 0 chrX 87095312 87095337 -75504593 + AT_rich Low_complexity Low_complexity 1 25 0 1525 245 25 50 chrX 87095712 87096227 -75503703 - MLT1D LTR MaLR 0 505 4 203 227 45 0 chrX 87096318 87096362 -75503568 + polypyrimidine Low_complexity Low_complexity 2 47 0 184 264 75 0 chrX 87096616 87096669 -75503261 - MIR SINE MIR -121 141 85 524 276 92 85 chrX 87096734 87097017 -75502913 - L2 LINE L2 0 3313 3029 310 301 163 44 chrX 87097601 87098238 -75501692 - HAL1 LINE L1 -3 2504 1792 895 173 100 2 chrX 87098265 87098411 -75501519 + MLT2A2 LTR ERVL 287 417 -36 207 0 0 0 chrX 87098411 87098434 -75501496 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 333 0 0 0 chrX 87098433 87098470 -75501460 + (TA)n Simple_repeat Simple_repeat 1 37 0 895 173 100 2 chrX 87098434 87098510 -75501420 + MLT2A2 LTR ERVL 417 453 0 3253 152 48 2 chrX 87098510 87099051 -75500879 + MER4B LTR ERV1 45 610 0 7567 165 40 50 chrX 87099139 87100690 -75499240 + MER4B-int LTR ERV1 180 1744 -5014 2158 121 0 3 chrX 87100690 87100996 -75498934 + AluSg SINE Alu 1 305 -5 7567 165 40 50 chrX 87100996 87101517 -75498413 + MER4B-int LTR ERV1 1744 2268 -4490 2308 100 0 0 chrX 87101517 87101818 -75498112 + AluSg SINE Alu 1 301 -9 7567 165 40 50 chrX 87101818 87101898 -75498032 + MER4B-int LTR ERV1 2268 2347 -4411 2210 106 0 0 chrX 87101898 87102190 -75497740 - AluY SINE Alu -19 292 1 7567 165 40 50 chrX 87102190 87103108 -75496822 + MER4B-int LTR ERV1 2347 3327 -3431 626 137 0 0 chrX 87103115 87103210 -75496720 + MER4B-int LTR ERV1 3452 3546 -3212 1072 168 8 2 chrX 87103221 87103458 -75496472 + MER4B-int LTR ERV1 4041 4326 -2432 * 1654 130 16 0 chrX 87103453 87103700 -75496230 + MER50-int LTR ERV1 6947 7197 -8 3753 194 7 31 chrX 87103700 87104446 -75495484 + MER50 LTR ERV1 1 728 -6 7032 154 28 62 chrX 87104446 87105954 -75493976 + MER4B-int LTR ERV1 5122 6577 -181 1617 157 15 15 chrX 87105946 87106214 -75493716 + MER4B-int LTR ERV1 6491 6758 0 * 3437 154 41 0 chrX 87106214 87106800 -75493130 + MER4B LTR ERV1 1 610 0 697 294 108 24 chrX 87106937 87107482 -75492448 - HAL1 LINE L1 -1258 1249 659 22 0 0 0 chrX 87108710 87108732 -75491198 + AT_rich Low_complexity Low_complexity 1 22 0 301 369 42 23 chrX 87109358 87109572 -75490358 + MIR SINE MIR 34 251 -11 228 234 39 109 chrX 87109868 87110125 -75489805 + L1ME LINE L1 812 1050 -5155 1098 294 79 36 chrX 87110381 87111394 -75488536 + L1ME LINE L1 1385 2470 -3745 2140 128 0 0 chrX 87111394 87111692 -75488238 + AluY SINE Alu 1 298 -13 1098 294 79 36 chrX 87111692 87112314 -75487616 + L1ME LINE L1 2470 3064 -3151 25 0 0 0 chrX 87112503 87112528 -75487402 + AT_rich Low_complexity Low_complexity 1 25 0 896 133 7 7 chrX 87112563 87112714 -75487216 + L1M1 LINE L1 2678 2828 -4737 1672 162 3 29 chrX 87112714 87113073 -75486857 - MER4A LTR ERV1 0 664 257 480 177 21 10 chrX 87113070 87113166 -75486764 - MER4A LTR ERV1 -567 97 1 * 1129 144 11 5 chrX 87113177 87113365 -75486565 - MER4A-int LTR ERV1 -5 6593 6405 2216 113 7 0 chrX 87114928 87115229 -75484701 + AluSq SINE Alu 6 308 -5 14811 116 52 10 chrX 87115502 87117994 -75481936 - MER4A-int LTR ERV1 -166 6432 3837 2992 121 79 24 chrX 87117997 87118704 -75481226 - MER4A-int LTR ERV1 -2921 3677 2840 540 183 122 0 chrX 87118704 87118819 -75481111 + LTR8 LTR ERV1 129 257 -434 4121 103 48 13 chrX 87118819 87119529 -75480401 - MER4A-int LTR ERV1 -4103 2495 1761 405 70 0 0 chrX 87119540 87119597 -75480333 + (CA)n Simple_repeat Simple_repeat 2 58 0 1358 85 34 64 chrX 87119597 87119937 -75479993 - MER4A-int LTR ERV1 -5609 1149 764 415 88 0 0 chrX 87119938 87119995 -75479935 - AluSg/x SINE Alu -75 235 179 1969 188 0 19 chrX 87119995 87120357 -75479573 + MER50 LTR ERV1 357 711 -23 19072 246 49 52 chrX 87120358 87126706 -75473224 + MER50-int LTR ERV1 1 6158 -933 2240 131 0 6 chrX 87127097 87127410 -75472520 + AluSx SINE Alu 1 311 -1 21 36 0 0 chrX 87127688 87127716 -75472214 + AT_rich Low_complexity Low_complexity 1 28 0 404 241 11 115 chrX 87129275 87129553 -75470377 + L1MC5 LINE L1 7662 7910 -51 4832 153 32 35 chrX 87130145 87131325 -75468605 - L1PB4 LINE L1 0 6156 4975 433 301 7 29 chrX 87131809 87131945 -75467985 - L2 LINE L2 -3 3310 3178 1636 182 101 56 chrX 87132425 87132871 -75467059 - MER31B LTR ERV1 0 466 1 972 168 6 12 chrX 87133139 87133300 -75466630 - FRAM SINE Alu -19 157 1 267 31 0 0 chrX 87133316 87133348 -75466582 + (TA)n Simple_repeat Simple_repeat 2 33 0 1824 141 37 0 chrX 87133348 87133618 -75466312 - AluSx SINE Alu -32 280 1 377 181 24 0 chrX 87133750 87133833 -75466097 + (CATA)n Simple_repeat Simple_repeat 3 87 0 278 209 26 17 chrX 87133843 87133958 -75465972 + (TTATA)n Simple_repeat Simple_repeat 5 120 0 185 257 14 54 chrX 87134465 87134539 -75465391 + MER5A DNA MER1_type 33 103 -86 311 227 55 86 chrX 87135007 87135208 -75464722 - L1ME LINE L1 -280 5884 5674 445 204 7 44 chrX 87135517 87135654 -75464276 - L1MC5 LINE L1 -29 7932 7801 25 31 0 0 chrX 87135863 87135895 -75464035 + AT_rich Low_complexity Low_complexity 1 32 0 747 154 0 22 chrX 87136519 87136655 -75463275 + FLAM_C SINE Alu 1 133 0 1475 241 61 0 chrX 87137481 87137825 -75462105 - MLT1A1 LTR MaLR 0 365 1 297 0 0 0 chrX 87137829 87137862 -75462068 + (TG)n Simple_repeat Simple_repeat 2 34 0 481 309 98 37 chrX 87138792 87139200 -75460730 - L1ME4a LINE L1 -286 5835 5403 182 363 128 0 chrX 87140161 87140263 -75459667 + L2 LINE L2 3199 3313 0 217 333 105 35 chrX 87140639 87140753 -75459177 - L2 LINE L2 -8 3264 3143 2356 243 31 30 chrX 87141705 87142123 -75457807 + L1MD2 LINE L1 5495 5916 -443 1049 230 129 9 chrX 87142123 87142449 -75457481 + MLT1A1 LTR MaLR 1 365 0 2356 243 31 30 chrX 87142449 87142668 -75457262 + L1MD2 LINE L1 5916 6133 -226 432 193 0 0 chrX 87142679 87142762 -75457168 + L1MD1 LINE L1 6081 6163 -79 2431 134 0 19 chrX 87142762 87143128 -75456802 + THE1B LTR MaLR 1 359 -5 21 36 0 0 chrX 87143170 87143198 -75456732 + AT_rich Low_complexity Low_complexity 1 28 0 682 224 37 5 chrX 87143237 87143400 -75456530 + MER45A DNA AcHobo 1 178 0 27 29 0 0 chrX 87144452 87144486 -75455444 + AT_rich Low_complexity Low_complexity 1 34 0 10701 202 32 14 chrX 87144497 87147223 -75452707 - L1PB3 LINE L1 0 6857 4182 2184 129 28 28 chrX 87147223 87147587 -75452343 + THE1B LTR MaLR 1 364 0 10545 114 4 32 chrX 87147587 87149212 -75450718 + THE1B-int LTR MaLR 1 1580 0 2449 117 19 6 chrX 87149212 87149571 -75450359 + THE1B LTR MaLR 1 364 0 10701 202 32 14 chrX 87149571 87150343 -75449587 - L1PB3 LINE L1 -2675 4182 3285 189 107 0 0 chrX 87150343 87150371 -75449559 + (TTG)n Simple_repeat Simple_repeat 1 28 0 10701 202 32 14 chrX 87150371 87150472 -75449458 - L1PB3 LINE L1 -3572 3285 3187 * 18190 192 45 4 chrX 87150464 87151893 -75448037 - L1PA13 LINE L1 -2 6812 5443 203 79 26 0 chrX 87151893 87151931 -75447999 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 18190 192 45 4 chrX 87151931 87155725 -75444205 - L1PA13 LINE L1 -1371 5443 1399 4419 283 91 5 chrX 87155736 87156892 -75443038 - L1PA13 LINE L1 -5532 1255 1 5396 230 66 37 chrX 87156900 87157263 -75442667 - L1PB3 LINE L1 -3650 3199 2848 1642 196 19 26 chrX 87157263 87157641 -75442289 + THE1C LTR MaLR 1 375 0 8752 139 72 9 chrX 87157642 87159128 -75440802 + THE1C-int LTR MaLR 2 1580 0 2041 152 24 22 chrX 87159130 87159499 -75440431 + THE1C LTR MaLR 3 372 -3 5396 230 66 37 chrX 87159499 87161000 -75438930 - L1PB3 LINE L1 -4001 2848 2004 387 0 0 0 chrX 87161000 87161043 -75438887 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5396 230 66 37 chrX 87161043 87163098 -75436832 - L1PB3 LINE L1 -4845 2004 10 189 74 0 0 chrX 87163099 87163126 -75436804 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1235 188 0 9 chrX 87165064 87165282 -75434648 + AluJb SINE Alu 6 221 -91 23 97 0 0 chrX 87165455 87165527 -75434403 + AT_rich Low_complexity Low_complexity 1 72 0 379 284 99 35 chrX 87165777 87165918 -75434012 - L2 LINE L2 -1 3312 3163 238 340 78 0 chrX 87165942 87166045 -75433885 - L2 LINE L2 -661 2653 2543 648 246 118 10 chrX 87167104 87167307 -75432623 - AluJo SINE Alu -4 308 84 4431 66 2 0 chrX 87167801 87168350 -75431580 - HERVFH19I LTR ERV1 -5003 2716 2167 1328 66 33 0 chrX 87168350 87168533 -75431397 - LTR19A LTR ERV1 -297 189 1 1657 208 0 6 chrX 87168570 87168882 -75431048 + AluJb SINE Alu 1 310 -2 385 285 81 8 chrX 87172413 87172536 -75427394 + MIR3 SINE MIR 70 201 -7 233 267 67 0 chrX 87173074 87173134 -75426796 - L2 LINE L2 -4 3268 3205 2050 169 23 16 chrX 87173247 87173708 -75426222 - MLT2A2 LTR ERVL -89 461 1 408 299 59 17 chrX 87173974 87174398 -75425532 + L1ME LINE L1 5255 5699 -471 839 251 66 39 chrX 87174466 87174803 -75425127 - MER76 LTR ERV -2 686 318 3203 191 68 0 chrX 87174803 87175422 -75424508 - MER67B LTR ERV1 0 661 1 839 251 66 39 chrX 87175422 87175500 -75424430 - MER76 LTR ERV -370 318 244 1096 228 77 34 chrX 87175509 87175887 -75424043 - MER110A LTR ERV1 -53 415 22 1851 207 28 8 chrX 87176655 87177046 -75422884 + MER74A LTR ERVL 130 528 -30 1242 100 0 0 chrX 87177089 87177603 -75422327 + (TA)n Simple_repeat Simple_repeat 1 514 0 309 242 11 33 chrX 87177604 87177695 -75422235 - L1MC4 LINE L1 -1340 6702 6614 1092 42 0 48 chrX 87177705 87177894 -75422036 + (TA)n Simple_repeat Simple_repeat 1 180 0 658 321 46 8 chrX 87178021 87178258 -75421672 - MIR SINE MIR 0 262 17 236 111 22 0 chrX 87178318 87178363 -75421567 + (TA)n Simple_repeat Simple_repeat 1 46 0 2791 150 28 2 chrX 87178842 87179348 -75420582 - L1MA9 LINE L1 0 6312 5794 567 181 19 0 chrX 87179354 87179459 -75420471 + L1MA9 LINE L1 5990 6096 -216 1020 129 0 0 chrX 87179496 87179651 -75420279 - L1MA9 LINE L1 -498 5793 5639 2949 101 50 14 chrX 87179652 87180096 -75419834 + LTR46 LTR ERV1 1 460 0 3603 117 11 16 chrX 87180096 87180641 -75419289 + LTR46-int LTR ERV1 1 542 -6443 19102 120 11 12 chrX 87180833 87183949 -75415981 + LTR46-int LTR ERV1 658 3790 -3195 18208 118 14 4 chrX 87183945 87186654 -75413276 + LTR46-int LTR ERV1 3938 6673 -312 * 2079 130 3 7 chrX 87186976 87187284 -75412646 + LTR46-int LTR ERV1 6679 6985 0 3005 101 31 18 chrX 87187284 87187738 -75412192 + LTR46 LTR ERV1 1 460 0 3015 209 21 7 chrX 87187738 87188693 -75411237 - L1M2 LINE L1 -649 5642 4670 583 189 114 11 chrX 87188960 87189078 -75410852 - L1MDa LINE L1 -4784 1756 1613 5884 133 33 15 chrX 87189078 87190030 -75409900 - LTR5 LTR ERVK 0 969 1 583 189 114 11 chrX 87190030 87190086 -75409844 - L1MDa LINE L1 -4927 1613 1564 4374 140 53 8 chrX 87190086 87190827 -75409103 + Tigger1 DNA MER2_type 1 774 -1644 8214 204 38 18 chrX 87190833 87192933 -75406997 - L1M2 LINE L1 -1632 4514 2373 457 326 28 6 chrX 87195190 87195368 -75404562 + MIR SINE MIR 75 256 -6 1000 233 79 98 chrX 87195375 87195782 -75404148 + MLT1E2 LTR MaLR 1 399 -106 240 180 16 16 chrX 87195782 87195843 -75404087 + MLT1E2 LTR MaLR 564 624 -2 23 0 0 0 chrX 87195890 87195913 -75404017 + AT_rich Low_complexity Low_complexity 1 23 0 1271 279 113 10 chrX 87196068 87196563 -75403367 - MLT1H LTR MaLR -3 546 1 373 222 132 21 chrX 87197061 87197205 -75402725 - L1MC5 LINE L1 -51 7910 7751 952 269 8 0 chrX 87197358 87197607 -75402323 + L1MDb LINE L1 772 1022 -5387 330 212 0 0 chrX 87197612 87197678 -75402252 + MLT2B3 LTR ERVL 6 71 -483 7735 180 19 2 chrX 87197737 87199062 -75400868 + ERVL-B3 LTR ERVL 3896 5242 -522 1690 182 13 31 chrX 87199062 87199571 -75400359 + AluJo SINE Alu 1 503 0 498 33 0 0 chrX 87199610 87199670 -75400260 + (GGAA)n Simple_repeat Simple_repeat 2 61 0 1050 126 0 0 chrX 87199736 87199903 -75400027 + (GAAA)n Simple_repeat Simple_repeat 4 170 0 1438 164 33 9 chrX 87199944 87200431 -75399499 + ERVL-B3 LTR ERVL 5233 5764 0 990 156 92 28 chrX 87200431 87200494 -75399436 + Ricksha DNA DNA 340 416 -1630 1913 206 79 7 chrX 87200592 87200995 -75398935 + MLT2B3 LTR ERVL 77 508 -46 243 204 0 0 chrX 87201145 87201194 -75398736 + MLT2B3 LTR ERVL 472 520 0 1145 138 15 196 chrX 87201209 87201466 -75398464 + L1MDb LINE L1 1033 1170 -5239 1511 206 15 4 chrX 87201466 87201733 -75398197 + AluJb SINE Alu 5 274 -38 1145 138 15 196 chrX 87201733 87201939 -75397991 + L1MDb LINE L1 1170 1412 -4997 * 2279 282 137 26 chrX 87201930 87203352 -75396578 + L1M4 LINE L1 3525 5104 -1042 670 245 33 80 chrX 87203355 87203774 -75396156 - MER39 LTR ERV1 -2 705 259 359 136 233 68 chrX 87203741 87203844 -75396086 - MER34 LTR ERV1 -417 125 6 * 1383 124 5 0 chrX 87403844 87404053 -75195877 - L1P3 LINE L1 -6251 210 1 8659 243 33 13 chrX 87404056 87407304 -75192626 + L1PA16 LINE L1 2002 5308 -1541 2922 85 20 10 chrX 87407305 87407705 -75192225 + MLT2A1 LTR ERVL 1 404 -40 334 214 71 0 chrX 87407711 87407795 -75192135 + L1MC4 LINE L1 6614 6703 -1339 329 113 38 0 chrX 87407798 87407851 -75192079 + MLT2A2 LTR ERVL 399 453 0 2828 191 13 41 chrX 87407855 87408743 -75191187 + L1PA16 LINE L1 5309 6187 -682 * 4213 22 0 0 chrX 87408739 87409231 -75190699 - L1P2 LINE L1 -373 5782 5291 261 0 0 0 chrX 87409227 87409281 -75190649 + L1PA3 LINE L1 6109 6162 0 * 3211 203 12 18 chrX 87409283 87409942 -75189988 + L1PA16 LINE L1 6181 6835 -34 32 57 0 0 chrX 87410515 87410568 -75189362 + AT_rich Low_complexity Low_complexity 1 53 0 1578 169 70 0 chrX 87410711 87410983 -75188947 + AluSx SINE Alu 3 293 -19 273 165 25 13 chrX 87412135 87412214 -75187716 + (TA)n Simple_repeat Simple_repeat 1 80 0 997 211 81 30 chrX 87413193 87413525 -75186405 - MER4B-int LTR ERV1 -4421 2337 1989 2114 32 0 0 chrX 87413549 87413801 -75186129 - L1PA4 LINE L1 -3 6152 5901 477 237 101 0 chrX 87414503 87414672 -75185258 - MER53 DNA DNA 0 189 4 403 305 24 60 chrX 87414694 87414987 -75184943 - L1MEc LINE L1 -5112 1127 863 1748 144 63 28 chrX 87415000 87415362 -75184568 - THE1C LTR MaLR 0 375 1 3303 211 44 15 chrX 87416030 87417302 -75182628 + L1MB8 LINE L1 4854 6164 -14 302 44 0 22 chrX 87418289 87418334 -75181596 + (TTATA)n Simple_repeat Simple_repeat 2 45 0 287 150 17 0 chrX 87418729 87418789 -75181141 - L1 LINE L1 -969 5177 5117 1539 220 8 16 chrX 87418794 87419171 -75180759 + L1MA10 LINE L1 5959 6332 -2 1065 238 143 30 chrX 87419190 87419361 -75180569 + L1MD3 LINE L1 812 962 -5444 6658 85 6 2 chrX 87419361 87420588 -75179342 + L1PA8 LINE L1 4936 6165 -7 1065 238 143 30 chrX 87420588 87421089 -75178841 + L1MD3 LINE L1 962 1512 -4894 1000 278 66 44 chrX 87421113 87421718 -75178212 + L1MD3 LINE L1 2989 3616 -2790 2376 93 0 0 chrX 87421718 87422019 -75177911 + AluSg1 SINE Alu 1 301 -8 1000 278 66 44 chrX 87422019 87422202 -75177728 + L1MD3 LINE L1 3616 3794 -2612 2409 121 22 8 chrX 87422262 87422625 -75177305 + MLT2A1 LTR ERVL 1 368 -76 42511 75 13 6 chrX 87422625 87428125 -75171805 + HERVL-A1-A1 LTR ERVL 116 5654 0 2867 97 35 14 chrX 87428125 87428504 -75171426 + MLT2A1 LTR ERVL 1 371 -73 303 28 0 0 chrX 87428504 87428540 -75171390 + (TA)n Simple_repeat Simple_repeat 1 36 0 288 0 0 0 chrX 87428539 87428571 -75171359 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 2867 97 35 14 chrX 87428540 87428626 -75171304 + MLT2A1 LTR ERVL 371 444 0 1418 236 53 34 chrX 87428627 87429157 -75170773 + L1MD3 LINE L1 4204 4743 -1663 1312 318 24 34 chrX 87429167 87429752 -75170178 + L1PA16 LINE L1 790 1368 -6206 340 356 0 8 chrX 87429834 87430022 -75169908 + L1PA16 LINE L1 2084 2297 -5277 11512 229 50 17 chrX 87430254 87435404 -75164526 + L1PA16 LINE L1 2182 7516 -88 4104 110 45 98 chrX 87435404 87436233 -75163697 - LTR1 LTR ERV1 0 785 1 512 138 0 0 chrX 87436292 87436379 -75163551 + L1PA16 LINE L1 7516 7602 -2 2136 265 72 14 chrX 87436387 87437741 -75162189 + L1MD3 LINE L1 4755 5651 -755 616 276 41 18 chrX 87437902 87438123 -75161807 + L1ME1 LINE L1 5918 6143 -23 2329 250 50 38 chrX 87438149 87439303 -75160627 + L1ME1 LINE L1 4981 6157 -9 407 311 36 14 chrX 87439502 87439721 -75160209 + L1MEc LINE L1 1850 2073 -4323 1007 317 63 18 chrX 87439753 87440173 -75159757 + LTR16A LTR ERVL 8 450 0 937 334 68 32 chrX 87440348 87440908 -75159022 + HERV16 LTR ERVL 263 842 -4154 419 189 9 28 chrX 87441073 87441179 -75158751 + L1M4 LINE L1 3803 3906 -2240 299 217 12 12 chrX 87441178 87441261 -75158669 + L1PA16 LINE L1 6068 6150 -16 * 647 172 8 0 chrX 87441338 87441460 -75158470 - MLT2B2 LTR ERVL -390 125 3 29 28 0 0 chrX 87441480 87441516 -75158414 + AT_rich Low_complexity Low_complexity 1 36 0 671 277 19 34 chrX 87441730 87441997 -75157933 + L1M4 LINE L1 3988 4250 -1896 369 93 0 0 chrX 87442288 87442342 -75157588 + (CA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chrX 87442825 87442847 -75157083 + AT_rich Low_complexity Low_complexity 1 22 0 2004 154 125 8 chrX 87444198 87444581 -75155349 - MSTA LTR MaLR 0 428 1 4031 168 117 18 chrX 87444581 87445368 -75154562 - MSTA-int LTR MaLR 0 1580 716 8646 184 83 19 chrX 87445368 87447017 -75152913 + MER52A LTR ERV1 1 1755 0 3383 178 39 61 chrX 87447017 87447368 -75152562 - MSTA-int LTR MaLR -880 771 414 189 0 0 0 chrX 87447368 87447389 -75152541 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3383 178 39 61 chrX 87447389 87447824 -75152106 - MSTA-int LTR MaLR -1237 414 2 1886 140 187 11 chrX 87447824 87448188 -75151742 - MSTA LTR MaLR 0 428 1 294 214 89 45 chrX 87448451 87448563 -75151367 - MIR SINE MIR -74 188 72 333 306 45 50 chrX 87450049 87450248 -75149682 + MIR SINE MIR 57 254 -8 7836 217 45 21 chrX 87451005 87451018 -75148912 - L1PA12 LINE L1 -2730 4854 4843 5658 115 35 46 chrX 87451018 87451686 -75148244 - L1PA14 LINE L1 0 6161 5487 2024 125 0 44 chrX 87451686 87452005 -75147925 - AluSq SINE Alu -8 305 1 5658 115 35 46 chrX 87452005 87452176 -75147754 - L1PA14 LINE L1 -674 5487 5316 1858 117 0 23 chrX 87452176 87452348 -75147582 - AluSg SINE Alu -13 297 132 189 0 0 0 chrX 87452348 87452369 -75147561 + (TA)n Simple_repeat Simple_repeat 2 22 0 1858 117 0 23 chrX 87452369 87452461 -75147469 - AluSg SINE Alu -178 132 39 5658 115 35 46 chrX 87452461 87452755 -75147175 - L1PA14 LINE L1 -845 5316 5030 2023 127 3 10 chrX 87452755 87453054 -75146876 - AluSx SINE Alu -15 297 1 5658 115 35 46 chrX 87453054 87453228 -75146702 - L1PA14 LINE L1 -1131 5030 4856 7836 217 45 21 chrX 87453228 87456377 -75143553 - L1PA12 LINE L1 -2741 4843 1624 22 70 0 0 chrX 87457846 87457889 -75142041 + AT_rich Low_complexity Low_complexity 1 43 0 1670 238 132 44 chrX 87458173 87458867 -75141063 - L1MC4 LINE L1 0 8042 7327 7600 132 44 21 chrX 87460555 87461495 -75138435 - HSMAR1 DNA Mariner -2 1285 367 2182 99 0 7 chrX 87461495 87461798 -75138132 - AluSx SINE Alu -11 301 1 7600 132 44 21 chrX 87461798 87461914 -75138016 - HSMAR1 DNA Mariner -920 367 255 1994 114 10 29 chrX 87461914 87462220 -75137710 - AluSx SINE Alu -12 300 1 1976 129 17 0 chrX 87462220 87462514 -75137416 - AluSq SINE Alu -14 299 1 7600 132 44 21 chrX 87462514 87462710 -75137220 - HSMAR1 DNA Mariner -1031 256 3 1573 182 0 39 chrX 87463183 87463490 -75136440 - AluJo SINE Alu -17 295 1 208 364 0 23 chrX 87464175 87464263 -75135667 + L2 LINE L2 3186 3271 -1 3340 97 50 30 chrX 87464319 87464858 -75135072 - L1PA10 LINE L1 -4 6164 5615 185 338 26 0 chrX 87464939 87465016 -75134914 - MIR SINE MIR -27 235 157 24 32 0 0 chrX 87466200 87466231 -75133699 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 87466741 87466762 -75133168 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chrX 87466860 87466889 -75133041 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 87467052 87467080 -75132850 + AT_rich Low_complexity Low_complexity 1 28 0 13033 193 16 20 chrX 87467117 87467494 -75132436 - L1PB1 LINE L1 0 6867 6490 1032 156 0 0 chrX 87467494 87467674 -75132256 + (TA)n Simple_repeat Simple_repeat 1 180 0 13033 193 16 20 chrX 87467674 87471053 -75128877 - L1PB1 LINE L1 -377 6490 3098 2483 58 3 10 chrX 87471053 87471364 -75128566 - AluY SINE Alu -1 310 2 13033 193 16 20 chrX 87471364 87471636 -75128294 - L1PB1 LINE L1 -3769 3098 2788 2270 68 0 3 chrX 87471636 87471928 -75128002 + AluY SINE Alu 1 291 -20 13033 193 16 20 chrX 87471928 87472099 -75127831 - L1PB1 LINE L1 -4079 2788 2618 936 160 23 6 chrX 87472134 87472309 -75127621 - MER61E LTR ERV1 -51 518 341 411 208 108 8 chrX 87472469 87472599 -75127331 - LTR25 LTR ERV1 -431 363 221 10109 139 30 8 chrX 87472711 87474447 -75125483 - L1PB1 LINE L1 -4244 2619 846 3990 255 94 25 chrX 87474520 87475564 -75124366 + L1ME1 LINE L1 3279 4250 -1896 3866 162 11 1 chrX 87475564 87476225 -75123705 + L1PA16 LINE L1 5491 6157 -9 3990 255 94 25 chrX 87476225 87476502 -75123428 + L1ME1 LINE L1 4250 4507 -1639 353 224 0 0 chrX 87476502 87476587 -75123343 + L1MB8 LINE L1 6093 6177 -1 3990 255 94 25 chrX 87476587 87476953 -75122977 + L1ME1 LINE L1 4507 5083 -1063 1540 272 11 22 chrX 87476975 87477435 -75122495 + MLT1D LTR MaLR 21 475 -30 610 214 115 25 chrX 87477457 87477839 -75122091 + L1ME1 LINE L1 5072 5481 -681 * 921 257 100 10 chrX 87477826 87478235 -75121695 + L1ME1 LINE L1 5721 6166 0 603 282 54 36 chrX 87478838 87479115 -75120815 + HAL1 LINE L1 73 354 -2153 2710 145 9 5 chrX 87479122 87479569 -75120361 + L1PA15 LINE L1 5714 6162 -3 22 0 0 0 chrX 87479569 87479591 -75120339 + AT_rich Low_complexity Low_complexity 1 22 0 26 19 0 58 chrX 87479740 87479792 -75120138 + AT_rich Low_complexity Low_complexity 1 49 0 2672 291 60 37 chrX 87479793 87481149 -75118781 + HAL1 LINE L1 362 1749 -758 3228 83 42 43 chrX 87481255 87481423 -75118507 - L1MA1 LINE L1 -5 6297 6130 1860 117 7 29 chrX 87481423 87481730 -75118200 - AluSx SINE Alu -12 300 1 3228 83 42 43 chrX 87481730 87482090 -75117840 - L1MA1 LINE L1 -172 6130 5770 1439 94 10 5 chrX 87482179 87482381 -75117549 + L1M1 LINE L1 5557 5759 -543 191 186 40 16 chrX 87484169 87484293 -75115637 + (TA)n Simple_repeat Simple_repeat 1 127 0 1248 149 17 50 chrX 87486338 87486579 -75113351 + MER50 LTR ERV1 1 233 -501 * 1431 179 25 7 chrX 87486568 87486842 -75113088 + MER50 LTR ERV1 433 711 -23 3493 146 25 19 chrX 87486927 87487635 -75112295 + MER50-int LTR ERV1 1 775 -6430 1352 111 27 31 chrX 87487617 87487842 -75112088 + MER50-int LTR ERV1 6974 7197 -8 * 1016 176 30 52 chrX 87487843 87488076 -75111854 + MER50 LTR ERV1 2 229 -505 * 1586 120 34 72 chrX 87488074 87488365 -75111565 + MER50 LTR ERV1 455 734 0 26 30 0 0 chrX 87488574 87488607 -75111323 + AT_rich Low_complexity Low_complexity 1 33 0 29 47 0 0 chrX 87488783 87488826 -75111104 + AT_rich Low_complexity Low_complexity 1 43 0 216 171 71 0 chrX 87488947 87489017 -75110913 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 654 178 16 0 chrX 87489020 87489149 -75110781 - L1MB2 LINE L1 -7 6164 6034 2598 42 0 6 chrX 87490004 87490315 -75109615 - AluY SINE Alu -2 309 1 1866 144 46 31 chrX 87491040 87491309 -75108621 + L1PA16 LINE L1 5716 5979 -184 2756 76 3 0 chrX 87491309 87491663 -75108267 - THE1A LTR MaLR 0 355 1 11365 106 3 1 chrX 87491663 87493239 -75106691 - THE1A-int LTR MaLR 0 1580 1 1918 184 6 8 chrX 87493241 87493595 -75106335 - THE1A LTR MaLR -2 353 1 1866 144 46 31 chrX 87493595 87493726 -75106204 + L1PA16 LINE L1 5979 6155 -8 3710 145 57 2 chrX 87493733 87494366 -75105564 + L1PA16 LINE L1 5318 5985 -181 2300 136 5 19 chrX 87494766 87495134 -75104796 + THE1B LTR MaLR 2 364 0 28 61 0 0 chrX 87495641 87495690 -75104240 + AT_rich Low_complexity Low_complexity 1 49 0 2154 139 19 25 chrX 87495739 87496105 -75103825 + THE1B LTR MaLR 1 364 0 3743 56 4 65 chrX 87496105 87496509 -75103421 + THE1B-int LTR MaLR 1 365 -1215 1932 155 0 17 chrX 87496509 87496805 -75103125 + AluSx SINE Alu 1 291 -21 3743 56 4 65 chrX 87496805 87496936 -75102994 + THE1B-int LTR MaLR 365 503 -1077 1255 159 7 67 chrX 87496941 87497211 -75102719 + AluSx SINE Alu 57 310 -2 972 116 73 30 chrX 87497222 87497386 -75102544 + THE1B LTR MaLR 194 364 0 10477 105 42 1 chrX 87497386 87498905 -75101025 + THE1B-int LTR MaLR 1 1580 0 1964 127 21 78 chrX 87498905 87499291 -75100639 + THE1B LTR MaLR 1 364 0 3432 144 55 0 chrX 87500227 87500825 -75099105 + L1MA4 LINE L1 5661 6291 -9 801 158 0 15 chrX 87500853 87500986 -75098944 + FLAM_C SINE Alu 3 133 0 2375 185 37 37 chrX 87501868 87502260 -75097670 - MER34 LTR ERV1 -6 536 142 2352 200 12 6 chrX 87502260 87502769 -75097161 + L1PB4 LINE L1 5643 6154 -2 2375 185 37 37 chrX 87502769 87502912 -75097018 - MER34 LTR ERV1 -399 143 1 299 292 0 0 chrX 87503484 87503556 -75096374 - MIR3 SINE MIR -25 183 112 518 183 70 14 chrX 87503800 87503942 -75095988 - L1MB8 LINE L1 0 6178 6029 3522 130 38 13 chrX 87504016 87504646 -75095284 - L1MA3 LINE L1 -7 6298 5653 5062 134 8 6 chrX 87504727 87505552 -75094378 - L1PA15 LINE L1 -2 6814 5988 5992 111 12 9 chrX 87505552 87507223 -75092707 + L1PA11 LINE L1 4495 6174 0 276 110 0 171 chrX 87507224 87507306 -75092624 + L1MA9 LINE L1 6245 6312 0 10602 233 16 3 chrX 87507309 87509965 -75089965 - L1PA15 LINE L1 -796 6001 3313 8733 250 49 17 chrX 87509951 87512468 -75087462 - L1PA15 LINE L1 -4183 2614 1 * 435 255 25 0 chrX 87512482 87512639 -75087291 - Zaphod DNA AcHobo -2981 1050 890 24 53 0 0 chrX 87512643 87512681 -75087249 + AT_rich Low_complexity Low_complexity 1 38 0 265 224 141 12 chrX 87512931 87513016 -75086914 - MIR SINE MIR -71 191 96 353 338 32 32 chrX 87514495 87514711 -75085219 + MIR SINE MIR 40 255 -7 468 226 0 0 chrX 87515574 87515658 -75084272 - AluJ/FLAM SINE Alu -228 84 1 681 282 15 58 chrX 87515688 87515947 -75083983 - MIR SINE MIR 0 262 15 21 36 0 0 chrX 87516619 87516647 -75083283 + AT_rich Low_complexity Low_complexity 1 28 0 406 258 22 32 chrX 87516852 87516989 -75082941 + L1MC5 LINE L1 6766 6900 -908 413 250 28 75 chrX 87517013 87517225 -75082705 + L1MC5 LINE L1 6908 7109 -852 303 28 0 0 chrX 87517301 87517337 -75082593 + (TG)n Simple_repeat Simple_repeat 1 36 0 387 254 71 22 chrX 87517512 87517780 -75082150 + L1MC5 LINE L1 7472 7752 -209 933 317 60 30 chrX 87517784 87518254 -75081676 + L1PA16 LINE L1 1 484 -7097 8860 223 37 15 chrX 87518262 87521806 -75078124 + L1PA16 LINE L1 3954 7600 -4 24 0 0 0 chrX 87521827 87521851 -75078079 + AT_rich Low_complexity Low_complexity 1 24 0 198 226 113 32 chrX 87521896 87521958 -75077972 - MIR SINE MIR -152 110 44 22 0 0 0 chrX 87522184 87522206 -75077724 + AT_rich Low_complexity Low_complexity 1 22 0 328 68 34 0 chrX 87523128 87523187 -75076743 - L1MA7 LINE L1 0 6291 6231 6022 127 17 14 chrX 87523431 87524416 -75075514 - L1MA2 LINE L1 0 7723 6736 183 42 0 0 chrX 87524416 87524440 -75075490 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1007 136 0 0 chrX 87524440 87524587 -75075343 - AluSg/x SINE Alu -31 281 135 17836 193 21 29 chrX 87524587 87526157 -75073773 - L1MA2 LINE L1 -1376 6189 4608 2093 140 0 0 chrX 87526157 87526449 -75073481 - AluSx SINE Alu -18 294 3 17836 193 21 29 chrX 87526449 87528198 -75071732 - L1MA2 LINE L1 -2957 4608 2846 243 0 0 0 chrX 87528198 87528225 -75071705 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 17836 193 21 29 chrX 87528225 87528838 -75071092 - L1MA2 LINE L1 -4719 2846 2230 2940 168 17 42 chrX 87528838 87529433 -75070497 - LTR22 LTR ERVK 0 580 1 17836 193 21 29 chrX 87529433 87529802 -75070128 - L1MA2 LINE L1 -5335 2230 1860 2336 73 0 35 chrX 87529802 87530115 -75069815 - AluY SINE Alu -9 302 1 17836 193 21 29 chrX 87530115 87532029 -75067901 - L1MA2 LINE L1 -5705 1860 22 8352 183 14 19 chrX 87532152 87533681 -75066249 - L1MA2 LINE L1 0 7723 6188 3454 190 16 77 chrX 87533681 87534712 -75065218 + LTR5 LTR ERVK 1 969 0 8352 183 14 19 chrX 87534712 87534799 -75065131 - L1MA2 LINE L1 -1535 6188 6102 227 31 31 0 chrX 87534799 87534831 -75065099 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8352 183 14 19 chrX 87534831 87534937 -75064993 - L1MA2 LINE L1 -1621 6102 5997 2019 106 0 34 chrX 87534937 87535263 -75064667 - AluSg SINE Alu 0 316 1 8352 183 14 19 chrX 87535263 87536454 -75063476 - L1MA2 LINE L1 -1726 5997 4820 494 187 80 21 chrX 87536471 87536658 -75063272 - L1MA2 LINE L1 -2805 4760 4563 10436 169 137 5 chrX 87536666 87538829 -75061101 - L1MA2 LINE L1 -4287 3278 831 2145 148 11 16 chrX 87538829 87539193 -75060737 + THE1B LTR MaLR 1 362 -2 9674 128 34 37 chrX 87539199 87540780 -75059150 + THE1B-int LTR MaLR 6 1580 0 2287 142 11 0 chrX 87540780 87541140 -75058790 + THE1B LTR MaLR 1 364 0 3483 232 39 20 chrX 87541141 87541937 -75057993 - L1MA2 LINE L1 -6731 834 24 243 88 0 0 chrX 87541968 87542002 -75057928 + (T)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chrX 87542141 87542171 -75057759 + AT_rich Low_complexity Low_complexity 1 30 0 325 303 27 90 chrX 87542385 87542496 -75057434 + L1MDa LINE L1 34 130 -6410 2562 61 0 3 chrX 87542496 87542807 -75057123 + AluY SINE Alu 1 310 -1 325 303 27 90 chrX 87542807 87542883 -75057047 + L1MDa LINE L1 130 209 -6331 959 259 132 59 chrX 87543451 87544495 -75055435 + L1MDa LINE L1 882 2756 -3784 * 3866 196 37 1 chrX 87544492 87545300 -75054630 - L1P LINE L1 -1004 5142 4306 1907 94 27 20 chrX 87545289 87545586 -75054344 + L1PA13 LINE L1 5746 6044 -119 * 2001 181 28 14 chrX 87545586 87545945 -75053985 + THE1B LTR MaLR 1 364 0 10584 117 25 3 chrX 87545945 87547478 -75052452 + THE1B-int LTR MaLR 11 1580 0 2115 161 28 17 chrX 87547478 87547838 -75052092 + THE1B LTR MaLR 1 364 0 803 107 8 0 chrX 87547838 87547959 -75051971 + L1PA13 LINE L1 6040 6161 -2 3928 224 28 6 chrX 87547962 87549030 -75050900 + L1MDa LINE L1 2740 3831 -2709 * 4344 179 57 16 chrX 87549021 87549990 -75049940 + L1MA8 LINE L1 5277 6285 -6 662 294 58 10 chrX 87549993 87550286 -75049644 + L1ME1 LINE L1 1895 2201 -4339 6284 157 26 2 chrX 87550308 87551402 -75048528 + HSMAR2 DNA Mariner 180 1300 -2 4291 237 80 111 chrX 87551460 87552678 -75047252 + L1ME1 LINE L1 2415 3669 -2871 2083 123 0 0 chrX 87552678 87552970 -75046960 + AluSc SINE Alu 1 292 -17 4291 237 80 111 chrX 87552970 87553049 -75046881 + L1ME1 LINE L1 3669 3749 -2791 261 0 0 0 chrX 87553049 87553078 -75046852 + (CA)n Simple_repeat Simple_repeat 2 30 0 4291 237 80 111 chrX 87553078 87553093 -75046837 + L1ME1 LINE L1 3749 3763 -2777 813 254 6 0 chrX 87553093 87553270 -75046660 + FRAM SINE Alu 1 174 -2 4291 237 80 111 chrX 87553270 87555069 -75044861 + L1ME1 LINE L1 3763 5589 -951 11473 135 7 14 chrX 87555070 87555930 -75044000 + L1PA11 LINE L1 3412 4276 -1898 2452 80 0 0 chrX 87555930 87556241 -75043689 - AluY SINE Alu 0 311 1 11473 135 7 14 chrX 87556241 87557982 -75041948 + L1PA11 LINE L1 4276 5994 -180 545 125 0 0 chrX 87557983 87558071 -75041859 + L1PA11 LINE L1 6086 6173 -1 2022 260 38 86 chrX 87558071 87559075 -75040855 + L1ME1 LINE L1 5584 6541 -19 360 323 90 26 chrX 87559557 87559792 -75040138 + L1MEc LINE L1 815 1046 -5338 1449 153 16 0 chrX 87559910 87560158 -75039772 + L1PA16 LINE L1 5909 6160 -6 21 57 0 0 chrX 87560173 87560208 -75039722 + AT_rich Low_complexity Low_complexity 1 35 0 2216 236 44 6 chrX 87560581 87561085 -75038845 + Tigger7 DNA MER2_type 44 566 -1921 2212 292 91 15 chrX 87561130 87562772 -75037158 + L1M4 LINE L1 2758 4525 -1621 978 141 68 56 chrX 87562911 87563145 -75036785 - MLT1B LTR MaLR 0 390 154 755 219 17 16 chrX 87563156 87563362 -75036568 + L1ME2 LINE L1 5732 5942 -252 3779 124 57 81 chrX 87563382 87564186 -75035744 + LTR1 LTR ERV1 1 785 0 353 176 68 0 chrX 87564386 87564460 -75035470 + L1ME2 LINE L1 6077 6155 -9 908 251 44 24 chrX 87564541 87564792 -75035138 - MIR SINE MIR 0 262 7 193 322 8 68 chrX 87565481 87565523 -75034407 - L2 LINE L2 0 3313 3270 304 228 13 0 chrX 87565523 87565602 -75034328 - MER116 DNA Mariner 0 80 1 193 322 8 68 chrX 87565602 87565677 -75034253 - L2 LINE L2 -43 3270 3203 5968 97 3 6 chrX 87565918 87566987 -75032943 - L1PA13 LINE L1 -3 6160 5075 341 169 0 0 chrX 87566987 87567046 -75032884 + L1M4 LINE L1 3901 3959 -2187 266 321 19 28 chrX 87568159 87568265 -75031665 - L3b LINE CR1 -87 1496 1392 1016 107 7 0 chrX 87568550 87568690 -75031240 + AluSq/x SINE Alu 1 141 -172 2055 89 7 18 chrX 87568691 87568971 -75030959 + AluSg SINE Alu 7 283 -27 2281 78 3 0 chrX 87569197 87569491 -75030439 - AluSg SINE Alu -15 295 1 4058 149 33 16 chrX 87570045 87570513 -75029417 + MER50 LTR ERV1 1 486 -248 2209 90 3 31 chrX 87570513 87570834 -75029096 + AluSx SINE Alu 1 312 0 4058 149 33 16 chrX 87570834 87571064 -75028866 + MER50 LTR ERV1 486 711 -23 556 341 45 0 chrX 87574221 87574400 -75025530 + MIR SINE MIR 76 262 0 346 357 51 0 chrX 87575879 87576036 -75023894 - MIR SINE MIR 0 262 98 249 57 0 0 chrX 87576736 87576771 -75023159 + (CA)n Simple_repeat Simple_repeat 2 36 0 2417 222 50 10 chrX 87576884 87577403 -75022527 - LTR9B LTR ERV1 0 644 105 525 302 108 13 chrX 87577659 87577891 -75022039 - MIR SINE MIR -8 254 1 306 273 157 0 chrX 87577968 87578089 -75021841 - MIR SINE MIR -3 259 120 2786 0 0 0 chrX 87578424 87578726 -75021204 - AluYa5 SINE Alu -9 302 1 785 251 16 5 chrX 87578889 87579076 -75020854 + MER5A DNA MER1_type 1 189 0 24 53 0 0 chrX 87579260 87579298 -75020632 + AT_rich Low_complexity Low_complexity 1 38 0 37 23 0 0 chrX 87579666 87579710 -75020220 + AT_rich Low_complexity Low_complexity 1 44 0 5679 61 4 7 chrX 87579788 87580540 -75019390 - L1PA7 LINE L1 0 6154 5405 5350 77 3 1 chrX 87582372 87583083 -75016847 - L1PA7 LINE L1 -4 6150 5439 521 155 58 57 chrX 87583213 87583396 -75016534 + L1MC/D LINE L1 5338 5518 -724 2989 257 65 57 chrX 87583551 87586700 -75013230 + L1MD3 LINE L1 3998 7413 -582 501 240 16 24 chrX 87586700 87586825 -75013105 + MLT1F1 LTR MaLR 2 125 -442 2989 257 65 57 chrX 87586825 87587098 -75012832 + L1MD3 LINE L1 7413 7682 -313 2067 123 0 0 chrX 87587260 87587579 -75012351 + AluSx SINE Alu 1 319 0 73 23 0 0 chrX 87587669 87587756 -75012174 + AT_rich Low_complexity Low_complexity 1 87 0 39 22 0 0 chrX 87589314 87589360 -75010570 + AT_rich Low_complexity Low_complexity 1 46 0 268 293 54 42 chrX 87589603 87589770 -75010160 + MIR SINE MIR 78 246 -16 408 208 40 0 chrX 87589780 87589881 -75010049 - Ricksha_b DNA DNA -8 1643 1539 18286 182 36 20 chrX 87589901 87593648 -75006282 + L1MA2 LINE L1 18 3833 -3732 6868 148 15 5 chrX 87593652 87595674 -75004256 + L1MA2 LINE L1 5684 7723 0 6133 163 45 3 chrX 87595744 87596822 -75003108 - Ricksha_b DNA DNA -131 1123 1 254 283 100 0 chrX 87597103 87597163 -75002767 + MIR3 SINE MIR 91 156 -52 27 0 0 0 chrX 87598432 87598459 -75001471 + AT_rich Low_complexity Low_complexity 1 27 0 219 36 0 0 chrX 87599324 87599352 -75000578 + (A)n Simple_repeat Simple_repeat 1 28 0 691 244 67 114 chrX 87599839 87600408 -74999522 + MLT1F LTR MaLR 1 542 0 777 124 8 0 chrX 87601295 87601424 -74998506 - L1MA5 LINE L1 -11 6289 6160 1115 158 10 0 chrX 87601625 87601821 -74998109 - L1MA4 LINE L1 -152 6148 5951 16837 171 29 14 chrX 87601830 87602954 -74996976 - L1PB1 LINE L1 -7 7165 6059 2144 112 0 3 chrX 87602954 87603088 -74996842 + AluSx SINE Alu 1 134 -178 741 23 0 0 chrX 87603088 87603175 -74996755 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 2144 112 0 3 chrX 87603175 87603343 -74996587 + AluSx SINE Alu 134 302 -10 16837 171 29 14 chrX 87603343 87603992 -74995938 - L1PB1 LINE L1 -1113 6059 5421 189 0 0 0 chrX 87603992 87604013 -74995917 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 16837 171 29 14 chrX 87604013 87608991 -74990939 - L1PB1 LINE L1 -1751 5421 308 264 59 0 0 chrX 87609160 87609194 -74990736 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 7207 155 23 35 chrX 87609957 87610246 -74989684 - L1MA3 LINE L1 -2 6303 6012 189 0 0 0 chrX 87610246 87610267 -74989663 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7207 155 23 35 chrX 87610267 87612516 -74987414 - L1MA3 LINE L1 -293 6012 3797 821 201 22 6 chrX 87612615 87612794 -74987136 + L1PBa LINE L1 419 600 -6263 2261 236 74 21 chrX 87612794 87613588 -74986342 - L1M4c LINE L1 -4520 1793 866 2248 70 3 7 chrX 87613588 87613886 -74986044 - AluY SINE Alu -14 297 1 2261 236 74 21 chrX 87613886 87613933 -74985997 - L1M4c LINE L1 -5447 866 823 368 286 16 8 chrX 87614504 87614630 -74985300 - L1PB1 LINE L1 -7041 127 1 23 0 0 0 chrX 87615535 87615558 -74984372 + AT_rich Low_complexity Low_complexity 1 23 0 349 320 26 33 chrX 87615780 87615933 -74983997 + MER5A DNA MER1_type 9 160 -29 5773 149 28 26 chrX 87616915 87617782 -74982148 - L1PB1 LINE L1 0 6151 5269 3238 45 2 2 chrX 87617782 87618184 -74981746 - L1PA7 LINE L1 0 6154 5753 5773 149 28 26 chrX 87618184 87618950 -74980980 - L1PB1 LINE L1 -882 5269 4506 214 143 36 54 chrX 87619104 87619160 -74980770 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1339 284 143 2 chrX 87619208 87619684 -74980246 + MLT1E LTR MaLR 1 543 -50 27 29 0 0 chrX 87620528 87620562 -74979368 + AT_rich Low_complexity Low_complexity 1 34 0 2186 156 53 11 chrX 87620849 87621227 -74978703 + MLT2D LTR ERVL 1 394 -20 333 68 0 0 chrX 87621257 87621301 -74978629 + (CA)n Simple_repeat Simple_repeat 2 45 0 1659 275 23 33 chrX 87621332 87621903 -74978027 + ERVL-D LTR ERVL 4 568 -5196 1223 46 0 0 chrX 87621906 87622057 -74977873 - L1P LINE L1 -4212 1934 1784 1060 228 0 5 chrX 87622099 87622314 -74977616 + ERVL-D LTR ERVL 758 971 -4793 355 325 77 58 chrX 87622525 87622680 -74977250 + L2 LINE L2 2147 2298 -1016 2127 125 3 10 chrX 87622680 87622992 -74976938 - AluSx SINE Alu 0 312 3 355 325 77 58 chrX 87622992 87623147 -74976783 + L2 LINE L2 2298 2463 -851 517 376 53 42 chrX 87623358 87623619 -74976311 + L2 LINE L2 2891 3159 -113 452 123 0 12 chrX 87623619 87623700 -74976230 + MADE1 DNA Mariner 1 80 0 517 376 53 42 chrX 87623700 87623816 -74976114 + L2 LINE L2 3159 3272 0 183 162 0 0 chrX 87623820 87623857 -74976073 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 228 163 0 0 chrX 87624438 87624481 -74975449 + (TA)n Simple_repeat Simple_repeat 2 44 0 5719 234 26 8 chrX 87624623 87626190 -74973740 - L1PB1 LINE L1 -1649 4497 2903 222 91 0 0 chrX 87626198 87626231 -74973699 + (TG)n Simple_repeat Simple_repeat 2 34 0 1991 244 18 3 chrX 87626237 87626816 -74973114 - L1PB1 LINE L1 -3775 2371 1785 495 248 0 0 chrX 87626810 87626923 -74973007 + L1PA16 LINE L1 6023 6135 -31 * 965 111 0 7 chrX 87626921 87627074 -74972856 - L1PA15-16 LINE L1 -4656 2193 2042 408 291 51 39 chrX 87627072 87627405 -74972525 - L1M4 LINE L1 -1243 4903 4567 * 400 313 10 5 chrX 87627426 87627621 -74972309 - L1MC4 LINE L1 -156 7886 7691 235 327 31 9 chrX 87627727 87627950 -74971980 - L1M4 LINE L1 -1602 4544 4317 6469 173 28 6 chrX 87627993 87630013 -74969917 - L1PA13 LINE L1 -19 6144 4068 2149 225 56 51 chrX 87630018 87630852 -74969078 - L1MD2 LINE L1 -381 5978 5130 34 55 0 0 chrX 87630852 87630907 -74969023 + AT_rich Low_complexity Low_complexity 1 55 0 341 305 32 7 chrX 87630960 87631114 -74968816 - L1MD2 LINE L1 -1089 5057 4900 554 238 41 0 chrX 87631320 87631442 -74968488 - AluJb SINE Alu -185 127 1 202 326 20 14 chrX 87631873 87632020 -74967910 + (TATATG)n Simple_repeat Simple_repeat 4 151 0 265 100 25 0 chrX 87632020 87632060 -74967870 + MER83B-int LTR ERV1 4246 4286 -594 263 132 19 19 chrX 87632060 87632113 -74967817 - L1MA3 LINE L1 -44 6261 6209 10082 182 21 7 chrX 87632220 87635393 -74964537 - L1MA3 LINE L1 -2 7722 4503 1468 149 36 7 chrX 87635378 87635654 -74964276 - L1MA3 LINE L1 -4644 2921 2638 * 1297 321 23 8 chrX 87636272 87636745 -74963185 - HERVL40 LTR ERVL -886 4644 4165 3391 307 33 33 chrX 87637008 87638331 -74961599 - HERVL40 LTR ERVL -1502 4028 2706 709 368 56 16 chrX 87638350 87639082 -74960848 + HERVL LTR ERVL 3735 4498 -990 606 319 34 31 chrX 87639291 87639617 -74960313 + HERVL LTR ERVL 4752 5078 -576 4456 154 13 89 chrX 87640693 87641608 -74958322 - LTR27-int LTR ERV1 -1805 5613 4784 2589 58 0 0 chrX 87641608 87641917 -74958013 + AluY SINE Alu 1 309 -2 4456 154 13 89 chrX 87641917 87642031 -74957899 - LTR27-int LTR ERV1 -2634 4784 4663 4034 138 36 105 chrX 87642041 87642966 -74956964 - LTR27-int LTR ERV1 -3572 1645 785 1040 241 57 53 chrX 87643037 87643646 -74956284 - LTR27-int LTR ERV1 -2507 601 2 2498 174 37 17 chrX 87643646 87644166 -74955764 - LTR27 LTR ERV1 0 501 3 1469 138 69 0 chrX 87645182 87645471 -74954459 - L1MA2 LINE L1 0 6304 5996 697 232 21 103 chrX 87645576 87645809 -74954121 - MER58A DNA MER1_type -6 218 5 246 250 14 0 chrX 87646082 87646154 -74953776 - L1MA6 LINE L1 -1 6299 6227 32 57 0 0 chrX 87646278 87646331 -74953599 + AT_rich Low_complexity Low_complexity 1 53 0 369 258 0 34 chrX 87647034 87647123 -74952807 + MLT1F1 LTR MaLR 35 120 -447 529 275 60 16 chrX 87647128 87647310 -74952620 + L1MD3 LINE L1 7404 7593 -402 25 31 0 0 chrX 87647310 87647342 -74952588 + AT_rich Low_complexity Low_complexity 1 32 0 354 264 155 8 chrX 87647843 87647972 -74951958 - L2 LINE L2 -4 3309 3162 2326 83 0 3 chrX 87648074 87648374 -74951556 - AluSq SINE Alu -14 299 1 623 182 61 0 chrX 87648815 87648947 -74950983 + MLT1B LTR MaLR 1 140 -250 277 290 74 37 chrX 87648947 87649271 -74950659 - L1MCb LINE L1 -4802 1943 1608 225 204 0 0 chrX 87649281 87649325 -74950605 + L1MC4 LINE L1 6660 6703 -1339 * 230 241 108 0 chrX 87649305 87649388 -74950542 - L1MC4 LINE L1 -1339 6703 6612 * 444 259 68 50 chrX 87649383 87649842 -74950088 - L1MCb LINE L1 -4849 1196 907 12489 195 63 12 chrX 87649949 87653830 -74946100 + L1M1 LINE L1 1113 5211 -2354 2249 241 38 27 chrX 87653842 87654215 -74945715 + L1M3 LINE L1 4741 5127 -2438 2434 64 6 16 chrX 87654215 87654527 -74945403 - AluSg SINE Alu -1 309 1 2249 241 38 27 chrX 87654527 87654858 -74945072 + L1M3 LINE L1 5127 5453 -2112 6537 174 28 11 chrX 87654868 87657179 -74942751 - L1PB3 LINE L1 -2 6152 3805 2319 260 8 18 chrX 87657191 87657910 -74942020 + L1M3 LINE L1 5442 6153 -1412 29500 108 7 17 chrX 87657910 87661640 -74938290 - L1PA7 LINE L1 -1 6468 2793 248 0 31 0 chrX 87661640 87661672 -74938258 + (TA)n Simple_repeat Simple_repeat 1 33 0 29500 108 7 17 chrX 87661672 87663683 -74936247 - L1PA7 LINE L1 -3676 2793 763 1530 226 70 24 chrX 87663692 87663728 -74936202 + L1M3 LINE L1 6146 6179 -1420 2153 131 0 6 chrX 87663728 87664042 -74935888 + AluSx SINE Alu 1 312 0 1530 226 70 24 chrX 87664042 87664790 -74935140 + L1M3 LINE L1 6179 6970 -629 14641 194 53 3 chrX 87664790 87669132 -74930798 + L1M1 LINE L1 697 5259 -2306 10603 207 85 10 chrX 87669131 87669801 -74930129 - L1M1 LINE L1 -5096 2469 1851 * 258 32 0 0 chrX 87669801 87669832 -74930098 + (TC)n Simple_repeat Simple_repeat 2 32 0 10603 207 85 10 chrX 87669832 87671447 -74928483 - L1M1 LINE L1 -5714 1851 12 183 42 0 0 chrX 87671667 87671691 -74928239 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2215 118 21 0 chrX 87671691 87672030 -74927900 + L1PA11 LINE L1 5829 6174 0 445 338 25 15 chrX 87672139 87672340 -74927590 - LTR16A LTR ERVL -223 227 25 410 372 30 66 chrX 87672403 87672766 -74927164 - L1MEd LINE L1 -5555 564 215 545 248 0 0 chrX 87673571 87673688 -74926242 - FLAM_A SINE Alu -13 120 4 34 65 0 0 chrX 87673805 87673867 -74926063 + AT_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chrX 87673891 87673915 -74926015 + AT_rich Low_complexity Low_complexity 1 24 0 1920 64 4 0 chrX 87674155 87674389 -74925541 - AluY SINE Alu -17 294 60 283 349 58 48 chrX 87674733 87675063 -74924867 + L2 LINE L2 2313 2645 -669 3232 205 45 11 chrX 87675146 87675898 -74924032 - L1MB7 LINE L1 0 6184 5407 1933 179 33 34 chrX 87677580 87678133 -74921797 - MLT2A2 LTR ERVL 0 554 4 297 353 116 17 chrX 87678306 87678479 -74921451 + MIR3 SINE MIR 16 205 -3 34 24 0 0 chrX 87678638 87678679 -74921251 + AT_rich Low_complexity Low_complexity 1 41 0 296 325 32 16 chrX 87678792 87678915 -74921015 + MLT1I LTR MaLR 19 143 -266 562 219 17 17 chrX 87679245 87679364 -74920566 - L2 LINE L2 -15 3298 3180 1242 293 44 30 chrX 87679371 87679873 -74920057 + LTR33 LTR ERVL 11 519 -2 279 0 0 0 chrX 87679877 87679908 -74920022 + (CA)n Simple_repeat Simple_repeat 2 32 0 695 331 100 3 chrX 87679908 87680198 -74919732 - L2 LINE L2 -160 3153 2836 640 330 124 21 chrX 87680194 87680524 -74919406 - L2 LINE L2 -584 2730 2367 * 1253 292 66 25 chrX 87680611 87681117 -74918813 + MLT1G LTR MaLR 1 589 -1 234 247 126 29 chrX 87681349 87681523 -74918407 + L1ME3 LINE L1 2114 2304 -4092 216 0 0 0 chrX 87681552 87681576 -74918354 + (T)n Simple_repeat Simple_repeat 1 24 0 217 258 8 45 chrX 87681590 87681722 -74918208 + A-rich Low_complexity Low_complexity 1 127 0 314 272 0 0 chrX 87681747 87681828 -74918102 + L1ME3 LINE L1 2539 2619 -3596 1436 296 45 61 chrX 87681845 87682179 -74917751 + L1ME3 LINE L1 3866 4204 -2011 2166 108 0 0 chrX 87682179 87682504 -74917426 + AluSg SINE Alu 1 325 0 1436 296 45 61 chrX 87682504 87683428 -74916502 + L1ME3 LINE L1 4204 5080 -1135 8101 104 5 1 chrX 87683435 87684620 -74915310 - L1PA7 LINE L1 -3537 2609 1420 18509 101 11 2 chrX 87684627 87687479 -74912451 + L1PA7 LINE L1 2627 5501 -671 2081 60 0 0 chrX 87687457 87687722 -74912208 + L1PA5 LINE L1 5888 6152 -2 * 5283 57 3 5 chrX 87687726 87688399 -74911531 + L1PA7 LINE L1 5476 6147 -7 717 286 125 23 chrX 87688502 87688811 -74911119 + L1ME3 LINE L1 5191 5467 -764 1704 168 14 12 chrX 87688811 87689157 -74910773 + L1MA4 LINE L1 5954 6300 0 717 286 125 23 chrX 87689157 87689541 -74910389 + L1ME3 LINE L1 5467 5963 -268 1702 151 154 3 chrX 87689556 87689874 -74910056 - MER47A DNA MER2_type 0 366 1 317 329 19 6 chrX 87690033 87690194 -74909736 + L1ME3 LINE L1 6066 6228 -3 386 358 68 5 chrX 87690349 87690539 -74909391 + MER20 DNA MER1_type 1 202 -17 414 39 0 0 chrX 87691746 87691798 -74908132 + (GA)n Simple_repeat Simple_repeat 1 52 0 252 342 110 29 chrX 87691895 87692167 -74907763 - L2 LINE L2 -1156 2158 1865 343 299 21 21 chrX 87692186 87692283 -74907647 + L2 LINE L2 3171 3267 -5 183 262 0 0 chrX 87692767 87692809 -74907121 - MIR SINE MIR -108 154 113 287 333 89 22 chrX 87693323 87693458 -74906472 - L2 LINE L2 -5 3308 3165 466 281 106 0 chrX 87693973 87694133 -74905797 - MLT1J LTR MaLR -279 232 56 1017 176 10 15 chrX 87694366 87694565 -74905365 + L1PBa LINE L1 3 200 -6663 6365 117 113 2 chrX 87694565 87696168 -74903762 + L1PBa LINE L1 634 2505 -4358 281 151 19 19 chrX 87696228 87696281 -74903649 + MER4A LTR ERV1 261 313 -351 26099 34 2 0 chrX 87696317 87699490 -74900440 - L1P LINE L1 -1340 4806 1629 6478 36 0 0 chrX 87699490 87700257 -74899673 + L1PA3 LINE L1 5388 6154 -1 1524 153 0 75 chrX 87700263 87700558 -74899372 + MER4A LTR ERV1 392 664 0 8040 217 12 11 chrX 87700561 87702044 -74897886 + L1PBa LINE L1 2554 4035 -2827 2111 216 33 69 chrX 87702044 87702679 -74897251 - LTR9 LTR ERV1 0 612 1 8040 217 12 11 chrX 87702679 87703353 -74896577 + L1PBa LINE L1 4035 4707 -2155 3455 118 4 2 chrX 87703384 87703909 -74896021 + L1PB1 LINE L1 5626 6151 0 1097 171 45 42 chrX 87703912 87704199 -74895731 + MER49 LTR ERV1 3 290 -633 626 152 10 0 chrX 87704184 87704283 -74895647 + MER49 LTR ERV1 616 715 -208 * 883 213 129 15 chrX 87704291 87704493 -74895437 + MER41D-int LTR ERV1 4604 4828 -1848 2386 264 20 15 chrX 87704797 87705446 -74894484 + MER41D-int LTR ERV1 5945 6596 -80 277 175 88 62 chrX 87705535 87705615 -74894315 + MER41D-int LTR ERV1 5858 5939 -7 2345 221 58 8 chrX 87705619 87706149 -74893781 + MER41D LTR ERV1 1 557 0 2382 65 10 0 chrX 87706767 87707059 -74892871 + AluY SINE Alu 2 296 -15 231 114 0 0 chrX 87707661 87707705 -74892225 + (A)n Simple_repeat Simple_repeat 1 44 0 3929 158 47 3 chrX 87708969 87709737 -74890193 - L1MA5A LINE L1 -3 6294 5493 15342 103 6 2 chrX 87709737 87711823 -74888107 + HERVL-A2 LTR ERVL 3327 5420 -234 786 96 82 34 chrX 87711866 87712012 -74887918 + HERVL-A2 LTR ERVL 5394 5546 -108 304 60 20 20 chrX 87712112 87712162 -74887768 + HERVL-A2 LTR ERVL 5605 5654 0 2058 176 35 32 chrX 87712162 87712713 -74887217 + MLT2A2 LTR ERVL 1 554 0 1341 213 52 11 chrX 87712713 87712985 -74886945 - L1M2c LINE L1 -6499 290 8 2126 112 0 3 chrX 87713926 87714248 -74885682 - AluSx SINE Alu 0 321 1 1439 226 3 3 chrX 87714354 87714675 -74885255 + AluJo SINE Alu 1 321 0 1277 239 6 3 chrX 87714685 87715012 -74884918 + L1 LINE L1 4126 4453 -1693 * 1896 214 71 6 chrX 87715010 87715505 -74884425 + L1PA16 LINE L1 4607 5133 -1013 * 4677 126 56 14 chrX 87715503 87716290 -74883640 + L1PA16 LINE L1 5347 6166 0 2147 248 49 59 chrX 87716469 87717268 -74882662 - L1ME3A LINE L1 -12 6158 5368 1782 257 47 17 chrX 87717620 87718216 -74881714 + L1M4 LINE L1 4331 4944 -1202 * 4256 182 38 8 chrX 87718214 87719503 -74880427 + L1MC1 LINE L1 4758 6089 -244 9187 142 63 57 chrX 87719503 87721464 -74878466 - MER4-int LTR ERV1 -822 5776 3805 14522 30 3 1 chrX 87721464 87723214 -74876716 - L1PA3 LINE L1 -1177 4969 3217 7853 16 0 0 chrX 87723214 87724409 -74875521 + L1PA3 LINE L1 4961 6155 0 760 140 62 25 chrX 87724414 87724587 -74875343 - MER4-int LTR ERV1 -4316 2015 1269 335 141 33 43 chrX 87724628 87724837 -74875093 - MER4-int LTR ERV1 -5758 840 524 1472 178 56 11 chrX 87724843 87725130 -74874800 - MER50 LTR ERV1 0 734 435 1326 146 18 5 chrX 87725133 87725352 -74874578 - MER50 LTR ERV1 -512 222 1 1521 117 23 31 chrX 87725385 87725642 -74874288 - MER4-int LTR ERV1 -6169 429 175 1063 191 5 29 chrX 87725770 87725980 -74873950 + L1MC1 LINE L1 6093 6297 -36 1107 260 58 27 chrX 87726021 87726530 -74873400 - L1M4 LINE L1 -1390 4756 4222 1307 176 4 7 chrX 87726530 87726803 -74873127 - L1MA4 LINE L1 -1 6299 6028 1107 260 58 27 chrX 87726803 87726928 -74873002 - L1M4 LINE L1 -1924 4222 4102 1075 268 56 45 chrX 87727167 87727222 -74872708 + LTR40a LTR ERVL 139 192 -327 1686 125 16 43 chrX 87727222 87727393 -74872537 + L1PA15 LINE L1 5864 6028 -137 2243 90 0 3 chrX 87727393 87727709 -74872221 + AluSg SINE Alu 2 316 0 1686 125 16 43 chrX 87727709 87727839 -74872091 + L1PA15 LINE L1 6028 6160 -5 1075 268 56 45 chrX 87727839 87728160 -74871770 + LTR40a LTR ERVL 192 519 0 24 0 0 0 chrX 87728215 87728239 -74871691 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 87728511 87728542 -74871388 + AT_rich Low_complexity Low_complexity 1 31 0 759 388 39 8 chrX 87729124 87729508 -74870422 - LTR33 LTR ERVL -14 507 112 349 248 26 60 chrX 87729648 87729765 -74870165 - MLT-int LTR MaLR -958 777 665 651 198 12 66 chrX 87729782 87729949 -74869981 - MLT1A1 LTR MaLR -207 158 1 1184 238 74 7 chrX 87729953 87730251 -74869679 + MLT1A1 LTR MaLR 48 365 0 324 263 66 29 chrX 87730611 87730748 -74869182 - L1M4 LINE L1 -1930 4216 4075 747 194 45 7 chrX 87730865 87731020 -74868910 + L1MCa LINE L1 20 180 -6246 2773 176 52 18 chrX 87731042 87731736 -74868194 - L1MC3 LINE L1 -743 5403 5156 5271 260 60 8 chrX 87731838 87733809 -74866121 - L1MC3 LINE L1 -1278 4868 2795 1770 238 12 31 chrX 87733818 87734238 -74865692 + ERVL LTR ERVL 1174 1585 -4179 338 321 37 49 chrX 87734279 87734734 -74865196 + L1PA12 LINE L1 1542 2073 -5508 10324 229 20 30 chrX 87734754 87735936 -74863994 + L1PA15 LINE L1 1607 2799 -4785 4319 112 23 10 chrX 87735936 87736631 -74863299 + L1MA1 LINE L1 5599 6302 0 10324 229 20 30 chrX 87736631 87739553 -74860377 + L1PA15 LINE L1 2799 5676 -1908 4745 175 16 3 chrX 87739708 87741379 -74858551 + L1PA15 LINE L1 5920 7603 0 4561 155 26 73 chrX 87741381 87742387 -74857543 + ERVL-B1 LTR ERVL 4799 5757 -7 1251 261 74 32 chrX 87742387 87742790 -74857140 + MLT2B1 LTR ERVL 1 420 -100 434 103 0 0 chrX 87742897 87742955 -74856975 - Tigger3(Golem) DNA MER2_type -79 2950 2893 5107 167 42 11 chrX 87742955 87743833 -74856097 + L1M1 LINE L1 1342 2246 -5319 10718 219 23 8 chrX 87943833 87945924 -74654006 + L1PB1 LINE L1 2144 4375 -2413 423 0 0 0 chrX 87945924 87945971 -74653959 + (CTA)n Simple_repeat Simple_repeat 3 49 0 10718 219 23 8 chrX 87945971 87946906 -74653024 + L1PB1 LINE L1 4375 5295 -1493 5546 147 17 13 chrX 87946907 87948075 -74651855 + L1PB1 LINE L1 5606 6786 -7 23 33 0 0 chrX 87948758 87948788 -74651142 + AT_rich Low_complexity Low_complexity 1 30 0 227 204 0 175 chrX 87949331 87949434 -74650496 + MLT1I LTR MaLR 318 402 -7 362 307 44 9 chrX 87950330 87950444 -74649486 - L2 LINE L2 -6 3266 3149 186 43 0 0 chrX 87952187 87952210 -74647720 + (GA)n Simple_repeat Simple_repeat 2 24 0 2103 136 9 0 chrX 87952648 87952987 -74646943 - L1MA1 LINE L1 0 6302 5961 6153 72 40 7 chrX 87952987 87953831 -74646099 - L1PA7 LINE L1 -2 6152 5281 2941 107 0 0 chrX 87953829 87954250 -74645680 - L1PA7 LINE L1 -2413 3733 3313 * 367 127 0 0 chrX 87954246 87954301 -74645629 + L1P4 LINE L1 5435 5489 -679 * 22174 198 18 29 chrX 87954315 87960150 -74639780 - L1P4 LINE L1 -685 5804 10 254 158 246 0 chrX 87960158 87960215 -74639715 - L1PB2 LINE L1 -115 6036 5966 * 2139 145 8 36 chrX 87960207 87960431 -74639499 - L1ME LINE L1 -297 5824 5613 2149 69 43 40 chrX 87960431 87960735 -74639195 - AluY SINE Alu -6 305 1 2139 145 8 36 chrX 87960735 87960934 -74638996 - L1ME LINE L1 -508 5613 5410 2491 70 0 3 chrX 87960935 87961247 -74638683 - AluY SINE Alu 0 311 1 19239 185 34 32 chrX 87961263 87963221 -74636709 - L1 LINE L1 -1222 6343 4391 2552 97 11 3 chrX 87963221 87963573 -74636357 + THE1A LTR MaLR 1 355 0 10750 105 35 1 chrX 87963573 87965100 -74634830 + THE1A-int LTR MaLR 1 1580 0 2658 94 11 0 chrX 87965100 87965451 -74634479 + THE1A LTR MaLR 1 355 0 19239 185 34 32 chrX 87965451 87966791 -74633139 - L1 LINE L1 -3174 4391 3055 1486 141 0 8 chrX 87966791 87967025 -74632905 - AluSg/x SINE Alu 0 310 79 19239 185 34 32 chrX 87967025 87967771 -74632159 - L1 LINE L1 -4510 3055 2312 2220 67 3 25 chrX 87967771 87968053 -74631877 - AluY SINE Alu -19 292 17 19239 185 34 32 chrX 87968053 87970326 -74629604 - L1 LINE L1 -5253 2312 8 325 262 186 14 chrX 87970504 87970649 -74629281 + MER5A DNA MER1_type 9 178 -11 972 242 152 28 chrX 87970931 87971253 -74628677 + MLT1D LTR MaLR 127 488 -17 201 208 0 21 chrX 87971360 87971408 -74628522 + (TAA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chrX 87971587 87971611 -74628319 + AT_rich Low_complexity Low_complexity 1 24 0 254 264 109 9 chrX 87971731 87971841 -74628089 + L2 LINE L2 2933 3053 -219 835 290 49 4 chrX 87972143 87972388 -74627542 - MIR SINE MIR 0 262 7 243 255 255 0 chrX 87972929 87973027 -74626903 + MIR SINE MIR 20 142 -66 1272 60 0 6 chrX 87974758 87974924 -74625006 - L1PA4 LINE L1 -8 6147 5983 294 87 0 0 chrX 87975384 87975430 -74624500 + (GA)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chrX 87976365 87976385 -74623545 + (T)n Simple_repeat Simple_repeat 1 20 0 267 330 11 0 chrX 87976630 87976718 -74623212 - MIR3 SINE MIR -17 191 103 522 255 163 33 chrX 87976730 87976883 -74623047 + MER5A DNA MER1_type 16 188 -1 1132 163 28 23 chrX 87977538 87977753 -74622177 + MER20 DNA MER1_type 3 218 -1 42302 38 21 1 chrX 87978646 87984674 -74615256 + L1PA3 LINE L1 2 6155 0 186 43 0 0 chrX 87985586 87985609 -74614321 + (TA)n Simple_repeat Simple_repeat 1 23 0 2407 219 44 25 chrX 87986576 87987210 -74612720 - MLT1E2 LTR MaLR 0 626 1 255 320 39 0 chrX 87987253 87987331 -74612599 - MER91A DNA MER1_type -115 81 1 268 374 123 19 chrX 87988417 87988572 -74611358 + MIR3 SINE MIR 5 175 -33 295 307 68 43 chrX 87988692 87988876 -74611054 + MIR3 SINE MIR 33 216 -31 256 245 18 25 chrX 87988948 87989043 -74610887 + MIR3 SINE MIR 66 160 -48 204 40 0 0 chrX 87990097 87990122 -74609808 + (TA)n Simple_repeat Simple_repeat 2 26 0 2577 180 22 54 chrX 87990310 87990903 -74609027 + MER4B LTR ERV1 1 574 -36 981 209 55 121 chrX 87991263 87991843 -74608087 + MER34 LTR ERV1 1 542 0 334 241 23 0 chrX 87992401 87992488 -74607442 + MER103 DNA DNA 22 110 -56 3890 137 14 2 chrX 87993401 87994028 -74605902 - MER41B LTR ERV1 0 635 1 862 204 74 0 chrX 87995032 87995263 -74604667 - MER69 DNA AcHobo -1 2525 2278 523 196 0 0 chrX 87995270 87995362 -74604568 - Tigger7 DNA MER2_type -29 2558 2467 420 152 13 0 chrX 87995353 87995432 -74604498 - MER69 DNA AcHobo -235 2291 2212 * 488 173 0 0 chrX 87995432 87995507 -74604423 - MER69 DNA AcHobo -2450 76 2 210 220 51 0 chrX 87995911 87995970 -74603960 + L2 LINE L2 3252 3313 0 275 349 97 11 chrX 87996109 87996284 -74603646 - MIR SINE MIR -34 228 39 490 315 45 50 chrX 88000505 88000630 -74599300 - MIR SINE MIR -29 233 109 999 169 113 36 chrX 88000630 88000790 -74599140 - MER33 DNA MER1_type -2261 324 178 249 33 0 0 chrX 88000790 88000820 -74599110 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 1607 203 4 0 chrX 88000821 88001102 -74598828 - AluJo SINE Alu -28 284 3 999 169 113 36 chrX 88001102 88001120 -74598810 - MER33 DNA MER1_type -2407 178 163 333 47 0 0 chrX 88001120 88001163 -74598767 + (TG)n Simple_repeat Simple_repeat 1 43 0 999 169 113 36 chrX 88001163 88001282 -74598648 - MER33 DNA MER1_type -2422 163 1 490 315 45 50 chrX 88001282 88001378 -74598552 - MIR SINE MIR -153 109 13 357 237 158 40 chrX 88002322 88002499 -74597431 + MIR SINE MIR 50 247 -15 384 331 27 14 chrX 88002900 88003048 -74596882 + MIR SINE MIR 47 196 -66 312 279 49 103 chrX 88004191 88004395 -74595535 + L1M2 LINE L1 821 1013 -5836 378 0 0 0 chrX 88004435 88004477 -74595453 + (CA)n Simple_repeat Simple_repeat 1 42 0 297 89 0 0 chrX 88007486 88007531 -74592399 + (TG)n Simple_repeat Simple_repeat 2 46 0 23 54 0 0 chrX 88012459 88012496 -74587434 + AT_rich Low_complexity Low_complexity 1 37 0 394 242 44 0 chrX 88013353 88013444 -74586486 + MIR3 SINE MIR 86 180 -28 180 244 12 85 chrX 88013642 88013724 -74586206 - L2 LINE L2 -97 3216 3141 415 229 10 0 chrX 88013784 88013880 -74586050 - MIR3 SINE MIR -11 197 101 22 0 0 0 chrX 88014251 88014273 -74585657 + AT_rich Low_complexity Low_complexity 1 22 0 2403 71 0 13 chrX 88014763 88015074 -74584856 + AluSc SINE Alu 1 307 -2 437 264 189 7 chrX 88015713 88015861 -74584069 - MER5A DNA MER1_type -2 187 13 2338 112 117 5 chrX 88017071 88017456 -74582474 - MSTA LTR MaLR 0 428 1 2505 24 41 0 chrX 88017703 88017994 -74581936 - AluY SINE Alu -8 303 1 312 272 48 32 chrX 88018967 88019092 -74580838 - MIR SINE MIR -71 191 65 25 65 0 0 chrX 88019184 88019230 -74580700 + AT_rich Low_complexity Low_complexity 1 46 0 208 187 45 187 chrX 88020025 88020188 -74579742 - MIR SINE MIR -50 212 73 2274 111 22 33 chrX 88020613 88020981 -74578949 + THE1B LTR MaLR 1 364 0 320 184 91 24 chrX 88021128 88021226 -74578704 - MIR SINE MIR -100 108 1 256 356 121 27 chrX 88022638 88022787 -74577143 - MIR SINE MIR -91 171 9 23 86 0 0 chrX 88022788 88022846 -74577084 + AT_rich Low_complexity Low_complexity 1 58 0 1459 86 0 0 chrX 88023938 88024125 -74575805 + U2 snRNA snRNA 1 187 -1 2373 81 3 0 chrX 88024152 88024449 -74575481 + AluSq SINE Alu 1 298 -15 27 81 0 0 chrX 88024761 88024823 -74575107 + AT_rich Low_complexity Low_complexity 1 62 0 2044 115 0 14 chrX 88025648 88025944 -74573986 + AluSx SINE Alu 1 292 -20 1809 152 17 3 chrX 88026748 88027044 -74572886 + AluJb SINE Alu 2 301 -11 322 230 14 0 chrX 88028534 88028608 -74571322 - MER116 DNA Mariner -2 78 4 264 91 0 0 chrX 88028791 88028824 -74571106 + U2 snRNA snRNA 1 33 -155 668 318 89 13 chrX 88029362 88029598 -74570332 + MIR SINE MIR 9 262 0 26 30 0 0 chrX 88030218 88030251 -74569679 + AT_rich Low_complexity Low_complexity 1 33 0 1378 206 0 37 chrX 88031378 88031674 -74568256 + AluJo SINE Alu 1 285 -27 1459 186 13 42 chrX 88032902 88033214 -74566716 + AluJo SINE Alu 1 303 -9 192 77 0 0 chrX 88033319 88033345 -74566585 + (GA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chrX 88033858 88033881 -74566049 + AT_rich Low_complexity Low_complexity 1 23 0 2366 88 0 0 chrX 88034060 88034355 -74565575 + AluSg SINE Alu 1 295 -15 1051 148 64 35 chrX 88035446 88035649 -74564281 - MER3 DNA MER1_type 0 209 1 26 0 0 0 chrX 88037978 88038004 -74561926 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chrX 88040036 88040063 -74559867 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chrX 88040195 88040224 -74559706 + AT_rich Low_complexity Low_complexity 1 29 0 428 277 37 41 chrX 88040551 88040709 -74559221 - MIR3 SINE MIR -9 199 41 21 36 0 0 chrX 88040762 88040790 -74559140 + AT_rich Low_complexity Low_complexity 1 28 0 880 228 59 25 chrX 88040823 88041025 -74558905 - MIR SINE MIR -31 231 23 24 0 0 0 chrX 88041033 88041057 -74558873 + AT_rich Low_complexity Low_complexity 1 24 0 2040 94 0 0 chrX 88041718 88041973 -74557957 + AluSx SINE Alu 28 282 -30 21 89 0 0 chrX 88042031 88042087 -74557843 + AT_rich Low_complexity Low_complexity 1 56 0 712 253 56 5 chrX 88043370 88043568 -74556362 + MER3 DNA MER1_type 2 209 0 2159 92 20 20 chrX 88044265 88044558 -74555372 + AluY SINE Alu 3 295 -16 22 0 0 0 chrX 88045178 88045200 -74554730 + AT_rich Low_complexity Low_complexity 1 22 0 219 146 0 0 chrX 88045472 88045513 -74554417 + (T)n Simple_repeat Simple_repeat 1 41 0 42545 36 21 1 chrX 88045516 88051548 -74548382 - L1PA3 LINE L1 0 6155 1 5761 121 35 1 chrX 88052307 88053912 -74546018 - L1PA14 LINE L1 -2 6159 4522 2179 39 0 4 chrX 88053963 88054221 -74545709 - AluY SINE Alu -10 301 45 282 29 0 0 chrX 88055259 88055294 -74544636 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chrX 88055583 88055606 -74544324 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 88057446 88057474 -74542456 + AT_rich Low_complexity Low_complexity 1 28 0 464 233 0 0 chrX 88057627 88057713 -74542217 + L2 LINE L2 3225 3310 -3 4909 37 0 5 chrX 88057911 88058504 -74541426 + L1PA5 LINE L1 5565 6154 0 1779 68 24 8 chrX 88058692 88058941 -74540989 - L1PA13 LINE L1 0 6163 5911 334 345 100 65 chrX 88060394 88060823 -74539107 - L3 LINE CR1 -2 1575 1132 21 0 0 0 chrX 88060974 88060995 -74538935 + AT_rich Low_complexity Low_complexity 1 21 0 703 79 0 10 chrX 88063143 88063244 -74536686 + L1M1 LINE L1 5505 5604 -698 213 362 76 19 chrX 88063326 88063431 -74536499 + MIR SINE MIR 36 146 -62 644 214 102 36 chrX 88063605 88063801 -74536129 + MER3 DNA MER1_type 1 209 0 300 357 18 9 chrX 88064974 88065086 -74534844 - MIR SINE MIR -65 143 31 1670 117 87 53 chrX 88065179 88065478 -74534452 + AluSx SINE Alu 3 311 -1 351 0 0 0 chrX 88069109 88069148 -74530782 + (TG)n Simple_repeat Simple_repeat 2 40 0 1785 157 10 35 chrX 88069151 88069463 -74530467 - AluSx SINE Alu -8 304 1 216 0 0 0 chrX 88070148 88070172 -74529758 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrX 88070489 88070520 -74529410 + AT_rich Low_complexity Low_complexity 1 31 0 2370 63 0 3 chrX 88072181 88072484 -74527446 + AluY SINE Alu 1 302 -9 189 0 0 0 chrX 88072991 88073012 -74526918 + (TG)n Simple_repeat Simple_repeat 2 22 0 844 209 0 0 chrX 88073017 88073175 -74526755 - FAM SINE Alu -17 158 1 1030 110 13 13 chrX 88074039 88074194 -74525736 - AluY SINE Alu -4 307 153 1258 137 4 22 chrX 88075125 88075352 -74524578 - L1PA14 LINE L1 -1 6160 5938 27 29 0 0 chrX 88077065 88077099 -74522831 + AT_rich Low_complexity Low_complexity 1 34 0 805 82 0 0 chrX 88077314 88077424 -74522506 - L1MA3 LINE L1 0 6305 6196 2463 74 0 3 chrX 88077851 88078160 -74521770 - AluSq SINE Alu -5 308 1 968 194 5 46 chrX 88078464 88078660 -74521270 - MER20 DNA MER1_type -1 218 31 9009 150 15 5 chrX 88079716 88082313 -74517617 - L1MA2 LINE L1 0 7723 5098 12453 134 11 13 chrX 88082316 88082855 -74517075 - L1PA10 LINE L1 -16 6152 5613 2435 102 17 14 chrX 88082855 88083216 -74516714 - THE1B LTR MaLR 0 364 3 10228 118 10 33 chrX 88083218 88084835 -74515095 - THE1B-int LTR MaLR 0 1580 1 12453 134 11 13 chrX 88084835 88087195 -74512735 - L1PA10 LINE L1 -556 5612 3279 1400 272 29 42 chrX 88087197 88087876 -74512054 - L1P3 LINE L1 -5088 787 2 14502 186 28 14 chrX 88087901 88090222 -74509708 - L1MA2 LINE L1 -2449 5116 2830 264 30 0 0 chrX 88090222 88090255 -74509675 + (TG)n Simple_repeat Simple_repeat 2 34 0 14502 186 28 14 chrX 88090255 88092674 -74507256 - L1MA2 LINE L1 -4735 2830 15 566 355 11 6 chrX 88095204 88095387 -74504543 + MIR3 SINE MIR 16 199 -9 190 315 0 19 chrX 88098300 88098354 -74501576 - L2 LINE L2 0 3272 3220 808 232 9 24 chrX 88099062 88099273 -74500657 + MER3 DNA MER1_type 2 209 0 212 231 0 0 chrX 88100878 88100917 -74499013 + (TG)n Simple_repeat Simple_repeat 2 40 0 2412 38 3 29 chrX 88101123 88101436 -74498494 - AluY SINE Alu -6 305 1 1505 141 0 27 chrX 88101961 88102224 -74497706 + L1PB1 LINE L1 5895 6150 -1 367 341 73 43 chrX 88102304 88102468 -74497462 - MIR3 SINE MIR -10 198 30 45 19 0 0 chrX 88102539 88102591 -74497339 + AT_rich Low_complexity Low_complexity 1 52 0 183 80 0 0 chrX 88104686 88104711 -74495219 + (GAA)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chrX 88107290 88107323 -74492607 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 88108200 88108221 -74491709 + AT_rich Low_complexity Low_complexity 1 21 0 2530 37 0 0 chrX 88109369 88109663 -74490267 + AluY SINE Alu 1 294 -17 2465 80 0 3 chrX 88109753 88110066 -74489864 + AluSx SINE Alu 1 312 0 21 82 0 0 chrX 88112398 88112447 -74487483 + AT_rich Low_complexity Low_complexity 1 49 0 2585 51 0 0 chrX 88112535 88112846 -74487084 + AluY SINE Alu 1 311 0 1706 151 0 33 chrX 88114214 88114513 -74485417 + AluSx SINE Alu 1 289 -23 24 0 0 0 chrX 88114513 88114537 -74485393 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chrX 88115044 88115071 -74484859 + AT_rich Low_complexity Low_complexity 1 27 0 2088 117 20 0 chrX 88115159 88115458 -74484472 - AluSx SINE Alu -7 305 1 21 36 0 0 chrX 88116533 88116561 -74483369 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chrX 88117778 88117803 -74482127 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chrX 88117858 88117892 -74482038 + (TG)n Simple_repeat Simple_repeat 2 35 0 235 350 135 23 chrX 88117972 88118415 -74481515 + L2 LINE L2 2438 2930 -384 849 67 0 0 chrX 88118550 88118654 -74481276 - AluSx SINE Alu -15 294 191 992 100 0 7 chrX 88118657 88118797 -74481133 - AluSx SINE Alu -173 139 1 699 12 0 0 chrX 88119193 88119276 -74480654 - AluY SINE Alu -12 299 217 21 0 0 0 chrX 88119678 88119699 -74480231 + AT_rich Low_complexity Low_complexity 1 21 0 191 94 57 19 chrX 88121578 88121631 -74478299 + (TA)n Simple_repeat Simple_repeat 2 56 0 400 169 52 7 chrX 88121703 88121839 -74478091 + (TA)n Simple_repeat Simple_repeat 1 142 0 1636 153 28 25 chrX 88121982 88122264 -74477666 - AluJb SINE Alu -24 288 6 346 218 10 89 chrX 88122398 88122499 -74477431 - MIR3 SINE MIR -18 190 98 217 329 38 0 chrX 88122487 88122566 -74477364 - MIR SINE MIR -3 259 178 * 268 241 0 0 chrX 88123718 88123776 -74476154 - L2 LINE L2 -4 3268 3211 267 337 166 5 chrX 88123807 88124000 -74475930 + MIR SINE MIR 28 251 -11 306 243 90 36 chrX 88124009 88124120 -74475810 - MIR SINE MIR -56 206 90 250 365 39 10 chrX 88124438 88124542 -74475388 - MIR SINE MIR -72 136 30 294 266 40 65 chrX 88124661 88124785 -74475145 + MIR SINE MIR 30 150 -112 2206 146 61 28 chrX 88124872 88125376 -74474554 - MLT2A2 LTR ERVL -8 546 5 7377 96 8 6 chrX 88125380 88126446 -74473484 - HERVL-A2 LTR ERVL 0 5654 4545 353 356 34 13 chrX 88126851 88127067 -74472863 + MIR SINE MIR 18 241 -21 245 331 50 36 chrX 88127085 88127275 -74472655 - MIR3 SINE MIR -66 196 5 23 0 0 0 chrX 88127605 88127628 -74472302 + AT_rich Low_complexity Low_complexity 1 23 0 687 339 86 29 chrX 88128054 88128754 -74471176 + L2 LINE L2 1806 2545 -769 591 312 68 17 chrX 88128760 88128997 -74470933 - MIR SINE MIR 0 262 14 392 382 27 23 chrX 88129017 88129276 -74470654 + L2 LINE L2 2560 2819 -495 345 47 0 0 chrX 88129497 88129540 -74470390 + (TG)n Simple_repeat Simple_repeat 2 44 0 473 93 0 70 chrX 88130024 88130110 -74469820 - MADE1 DNA Mariner 0 80 1 546 222 25 49 chrX 88130347 88130509 -74469421 - L1ME4a LINE L1 -4 6117 5960 432 271 68 11 chrX 88130512 88130689 -74469241 - L1ME4a LINE L1 -264 5857 5671 307 353 154 5 chrX 88130693 88130894 -74469036 + L1M4 LINE L1 4018 4248 -1898 1225 190 0 0 chrX 88130923 88131190 -74468740 - AluJb SINE Alu 0 312 86 288 331 162 7 chrX 88132294 88132448 -74467482 - MER5B DNA MER1_type 0 178 1 192 40 0 0 chrX 88132619 88132644 -74467286 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 387 0 0 0 chrX 88133216 88133259 -74466671 + (CA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chrX 88133258 88133288 -74466642 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 25 51 0 0 chrX 88133294 88133333 -74466597 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chrX 88133364 88133397 -74466533 + AT_rich Low_complexity Low_complexity 1 33 0 3223 80 2 0 chrX 88133477 88133916 -74466014 - L1PA13 LINE L1 -7 6156 5717 2728 123 8 47 chrX 88133916 88134367 -74465563 + L1P4 LINE L1 5041 5473 -695 2121 114 0 3 chrX 88134367 88134665 -74465265 + AluSx SINE Alu 1 297 -15 2728 123 8 47 chrX 88134665 88134871 -74465059 + L1P4 LINE L1 5473 5685 -483 23 0 0 0 chrX 88135435 88135458 -74464472 + AT_rich Low_complexity Low_complexity 1 23 0 1466 90 70 4 chrX 88135617 88135861 -74464069 - L1MA9 LINE L1 0 6312 6053 2464 123 7 19 chrX 88137161 88137583 -74462347 - L1MA3 LINE L1 0 6305 5889 4535 180 26 4 chrX 88137583 88138496 -74461434 - L1 LINE L1 -1445 4701 3769 14248 201 21 12 chrX 88138518 88143848 -74456082 + L1PBa LINE L1 1 5531 -1331 705 188 30 0 chrX 88143942 88144075 -74455855 - MLT1E2 LTR MaLR 0 626 490 25 0 0 0 chrX 88144075 88144100 -74455830 + AT_rich Low_complexity Low_complexity 1 25 0 4476 131 26 12 chrX 88146988 88147753 -74452177 - L1MC1 LINE L1 0 6333 5558 688 264 151 9 chrX 88148017 88148229 -74451701 - MIR SINE MIR 0 262 21 1830 122 27 111 chrX 88148271 88148639 -74451291 + MER1B DNA MER1_type 1 337 0 911 99 23 0 chrX 88148928 88149059 -74450871 + HERVL-A2 LTR ERVL 5520 5653 -1 2082 162 50 28 chrX 88149060 88149603 -74450327 + MLT2A2 LTR ERVL 1 554 0 1936 80 59 17 chrX 88149608 88149897 -74450033 + L1PA16 LINE L1 5864 6164 -2 1686 226 100 28 chrX 88149919 88150380 -74449550 + MLT1D LTR MaLR 12 505 0 1993 158 22 8 chrX 88150919 88151280 -74448650 - MER47A DNA MER2_type 0 366 1 1202 239 14 58 chrX 88151852 88151905 -74448025 - MLT2D LTR ERVL 0 414 360 441 36 0 0 chrX 88151905 88151960 -74447970 + (CA)n Simple_repeat Simple_repeat 2 56 0 1202 239 14 58 chrX 88151960 88152254 -74447676 - MLT2D LTR ERVL -54 360 82 251 194 101 93 chrX 88152155 88152284 -74447646 - MLT1E1 LTR MaLR -408 246 117 * 21 57 0 0 chrX 88152499 88152534 -74447396 + AT_rich Low_complexity Low_complexity 1 35 0 2071 146 40 3 chrX 88152534 88152911 -74447019 - L1MA5A LINE L1 -5 6292 5902 854 288 46 0 chrX 88153146 88153365 -74446565 - MIR SINE MIR -29 233 5 294 252 97 29 chrX 88153429 88153532 -74446398 - MIR3 SINE MIR -5 203 94 24 85 0 0 chrX 88154919 88154978 -74444952 + AT_rich Low_complexity Low_complexity 1 59 0 21 71 0 0 chrX 88155083 88155125 -74444805 + AT_rich Low_complexity Low_complexity 1 42 0 713 278 104 9 chrX 88155181 88155411 -74444519 - MIR SINE MIR -9 253 2 304 260 10 40 chrX 88156331 88156431 -74443499 - L1MC4 LINE L1 -1311 6731 6635 374 56 0 19 chrX 88156973 88157027 -74442903 + (TG)n Simple_repeat Simple_repeat 1 53 0 421 333 128 9 chrX 88157235 88157454 -74442476 + L3 LINE CR1 1331 1575 -2 2453 103 13 13 chrX 88157662 88158041 -74441889 - L1PA11 LINE L1 -3 6171 5793 358 321 9 32 chrX 88158177 88158475 -74441455 + GA-rich Low_complexity Low_complexity 1 291 0 299 96 19 0 chrX 88158494 88158546 -74441384 + (TG)n Simple_repeat Simple_repeat 1 53 0 3181 145 64 9 chrX 88161442 88162020 -74437910 - MER4B LTR ERV1 0 610 1 257 51 26 0 chrX 88162390 88162429 -74437501 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 41 72 0 0 chrX 88162720 88162803 -74437127 + AT_rich Low_complexity Low_complexity 1 83 0 4902 266 58 51 chrX 88164065 88165807 -74434123 + L1MEc LINE L1 22 1751 -4645 2031 143 110 15 chrX 88165807 88166198 -74433732 + MSTA LTR MaLR 1 428 0 4902 266 58 51 chrX 88166198 88166388 -74433542 + L1MEc LINE L1 1751 1938 -4458 1452 184 24 35 chrX 88166388 88166676 -74433254 - AluJb SINE Alu -25 287 3 4902 266 58 51 chrX 88166676 88166853 -74433077 + L1MEc LINE L1 1938 2146 -4250 803 100 0 0 chrX 88166855 88166965 -74432965 + L1MA1 LINE L1 6099 6208 -94 4909 262 57 34 chrX 88166967 88167944 -74431986 + L1MEc LINE L1 2153 3106 -3109 195 42 0 0 chrX 88167944 88167968 -74431962 + (GAAAA)n Simple_repeat Simple_repeat 5 28 0 4909 262 57 34 chrX 88167968 88168757 -74431173 + L1MEc LINE L1 3106 3914 -2301 3133 119 32 26 chrX 88168757 88169288 -74430642 + L1MC1 LINE L1 5798 6331 -2 4909 262 57 34 chrX 88169288 88169535 -74430395 + L1MEc LINE L1 3914 4154 -2061 351 0 0 0 chrX 88169869 88169908 -74430022 + (TG)n Simple_repeat Simple_repeat 2 40 0 213 39 0 0 chrX 88170888 88170914 -74429016 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chrX 88171509 88171539 -74428391 + AT_rich Low_complexity Low_complexity 1 30 0 378 288 54 9 chrX 88171980 88172091 -74427839 - MIR SINE MIR -76 186 71 22 0 0 0 chrX 88172152 88172174 -74427756 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chrX 88172404 88172445 -74427485 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chrX 88172514 88172535 -74427395 + AT_rich Low_complexity Low_complexity 1 21 0 1687 170 83 65 chrX 88174441 88174899 -74425031 - MER31B LTR ERV1 0 466 1 298 352 82 0 chrX 88175393 88175552 -74424378 + MIR3 SINE MIR 32 203 -5 26 104 0 0 chrX 88175557 88175653 -74424277 + AT_rich Low_complexity Low_complexity 1 96 0 2477 114 13 11 chrX 88175998 88176376 -74423554 - L1PB3 LINE L1 0 6154 5776 304 94 0 31 chrX 88176390 88176454 -74423476 + (TA)n Simple_repeat Simple_repeat 1 62 0 613 63 0 0 chrX 88176463 88176542 -74423388 - L1PB3 LINE L1 -366 5788 5710 372 261 76 0 chrX 88176589 88176681 -74423249 + L2 LINE L2 3179 3277 -36 4967 96 20 12 chrX 88178432 88179183 -74420747 + L1MA1 LINE L1 5542 6298 -4 6137 99 13 1 chrX 88179797 88181247 -74418683 - L1PA11 LINE L1 0 6174 4705 9924 229 20 17 chrX 88181251 88184632 -74415298 - L1PA12 LINE L1 -3121 4463 9 4495 175 70 29 chrX 88184996 88185522 -74414408 - L1MA9 LINE L1 0 6312 5809 225 0 0 0 chrX 88185522 88185547 -74414383 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4495 175 70 29 chrX 88185547 88186261 -74413669 - L1MA9 LINE L1 -503 5809 5005 2105 127 3 0 chrX 88186261 88186569 -74413361 - AluSx SINE Alu -3 309 1 4495 175 70 29 chrX 88186569 88186885 -74413045 - L1MA9 LINE L1 -1307 5005 4703 4776 181 43 10 chrX 88186886 88187555 -74412375 + L1 LINE L1 3695 4340 -1806 2672 87 16 3 chrX 88187555 88187924 -74412006 - THE1C LTR MaLR -1 374 1 9602 144 10 29 chrX 88187924 88189535 -74410395 - THE1C-int LTR MaLR 0 1580 1 2609 120 0 3 chrX 88189535 88189911 -74410019 - THE1C LTR MaLR 0 375 1 4776 181 43 10 chrX 88189911 88190210 -74409720 + L1 LINE L1 4339 4697 -1449 2332 175 28 30 chrX 88191685 88192147 -74407783 - LOR1b LTR ERV1 0 461 1 1781 54 8 8 chrX 88192263 88192503 -74407427 + L1PA6 LINE L1 5912 6151 -3 22 0 0 0 chrX 88192582 88192604 -74407326 + AT_rich Low_complexity Low_complexity 1 22 0 2203 96 0 27 chrX 88192650 88192984 -74406946 - L1PA8 LINE L1 0 6172 5848 2055 109 17 54 chrX 88193104 88193454 -74406476 + MER1B DNA MER1_type 1 337 0 218 284 136 0 chrX 88193758 88193846 -74406084 - MIR SINE MIR -111 151 52 213 349 32 0 chrX 88194240 88194365 -74405565 - MIR SINE MIR -67 141 21 1712 168 13 3 chrX 88195362 88195671 -74404259 + AluJo SINE Alu 1 312 0 432 263 51 0 chrX 88195688 88195825 -74404105 + MIR SINE MIR 10 153 -109 1660 83 181 258 chrX 88195825 88196453 -74403477 - LTR12 LTR ERV1 -134 580 1 262 276 181 0 chrX 88196623 88196739 -74403191 + MIR SINE MIR 120 256 -6 822 159 53 0 chrX 88197738 88197889 -74402041 + L1MA8 LINE L1 5968 6126 -165 * 5370 23 12 10 chrX 88197880 88198734 -74401196 - L1PA2 LINE L1 -588 5567 4712 5247 17 0 0 chrX 88198696 88199296 -74400634 + L1PA2 LINE L1 5555 6154 -1 * 879 103 35 46 chrX 88199312 88199459 -74400471 + L1MA8 LINE L1 6115 6261 -30 2442 83 0 0 chrX 88199459 88199760 -74400170 - AluSx SINE Alu -11 301 1 879 103 35 46 chrX 88199760 88199786 -74400144 + L1MA8 LINE L1 6261 6286 -5 23 0 0 0 chrX 88199913 88199936 -74399994 + AT_rich Low_complexity Low_complexity 1 23 0 2964 264 88 27 chrX 88200206 88200590 -74399340 - L2 LINE L2 -214 3099 2740 2268 91 10 0 chrX 88200590 88200897 -74399033 - AluSp SINE Alu -3 310 1 2964 264 88 27 chrX 88200897 88201627 -74398303 - L2 LINE L2 -573 2740 1922 1165 156 0 0 chrX 88201894 88202080 -74397850 - AluJb SINE Alu -8 304 119 379 333 42 83 chrX 88204077 88204437 -74395493 + L2 LINE L2 2927 3271 -1 559 281 2 0 chrX 88205323 88205463 -74394467 - MIR SINE MIR -66 142 1 1131 152 193 16 chrX 88206337 88206580 -74393350 - AluJo SINE Alu -16 286 1 321 239 11 23 chrX 88206793 88206881 -74393049 - L1MC4 LINE L1 -1342 6700 6614 246 145 0 40 chrX 88206888 88206964 -74392966 + (TA)n Simple_repeat Simple_repeat 1 73 0 1196 120 10 36 chrX 88207430 88207622 -74392308 - THE1B LTR MaLR -2 362 176 182 271 35 71 chrX 88209200 88209285 -74390645 - L3 LINE CR1 -622 955 874 1151 115 33 25 chrX 88209408 88209624 -74390306 - THE1B LTR MaLR -161 214 1 1295 305 88 50 chrX 88210216 88211035 -74388895 - L1MEd LINE L1 -5267 852 3 2257 89 0 0 chrX 88211070 88211387 -74388543 + AluSg SINE Alu 1 317 0 1760 214 72 21 chrX 88212283 88212756 -74387174 - MLT1D LTR MaLR -6 499 3 1915 151 11 0 chrX 88212942 88213227 -74386703 - AluSx SINE Alu -24 288 1 25 31 0 0 chrX 88213389 88213421 -74386509 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrX 88213873 88213894 -74386036 + AT_rich Low_complexity Low_complexity 1 21 0 350 268 24 16 chrX 88214025 88214152 -74385778 + CT-rich Low_complexity Low_complexity 3 130 0 198 47 0 70 chrX 88215092 88215126 -74384804 + (GAAAA)n Simple_repeat Simple_repeat 2 34 -7 2320 90 0 3 chrX 88215126 88215437 -74384493 + AluY SINE Alu 1 310 -1 198 47 0 70 chrX 88215437 88215445 -74384485 + (GAAAA)n Simple_repeat Simple_repeat 34 41 0 246 240 53 0 chrX 88215562 88215637 -74384293 - MER103 DNA DNA -58 108 30 4713 216 35 89 chrX 88215637 88216002 -74383928 - L1MDa LINE L1 -4905 1635 1252 552 203 0 0 chrX 88216002 88216130 -74383800 - L1MA6 LINE L1 -5 6295 6168 4713 216 35 89 chrX 88216130 88217356 -74382574 - L1MDa LINE L1 -5288 1252 131 248 250 0 12 chrX 88217446 88217530 -74382400 - HAL1b LINE L1 -1029 319 237 23 68 0 0 chrX 88217632 88217676 -74382254 + AT_rich Low_complexity Low_complexity 1 44 0 315 277 185 0 chrX 88218587 88218706 -74381224 - MIR SINE MIR -65 197 57 251 406 0 0 chrX 88218843 88218939 -74380991 - L2 LINE L2 -16 3256 3161 4829 184 40 32 chrX 88219890 88221689 -74378241 - L1MA9 LINE L1 0 6312 4528 2305 71 30 3 chrX 88221689 88221986 -74377944 - AluY SINE Alu -6 305 1 2377 81 3 10 chrX 88221986 88222294 -74377636 - AluSq SINE Alu -7 306 1 4829 184 40 32 chrX 88222294 88222375 -74377555 - L1MA9 LINE L1 -1783 4529 4411 2359 176 7 25 chrX 88222375 88222812 -74377118 + Tigger2a DNA MER2_type 1 429 -5 5029 180 28 22 chrX 88222832 88223768 -74376162 - L1MA9 LINE L1 -1754 4392 3447 2209 129 0 0 chrX 88223768 88224078 -74375852 - AluSx SINE Alu -1 311 2 5029 180 28 22 chrX 88224078 88224297 -74375633 - L1MA9 LINE L1 -2699 3447 3231 200 412 22 29 chrX 88224561 88224697 -74375233 + L2 LINE L2 3119 3253 -19 1602 181 7 7 chrX 88224740 88225060 -74374870 - AluJb SINE Alu 0 320 1 23 78 0 0 chrX 88226194 88226245 -74373685 + AT_rich Low_complexity Low_complexity 1 51 0 19554 175 17 16 chrX 88226284 88227304 -74372626 - L1MA1 LINE L1 -5 7716 6698 2307 104 3 0 chrX 88227304 88227613 -74372317 - AluSp SINE Alu -3 310 1 19554 175 17 16 chrX 88227613 88230614 -74369316 - L1MA1 LINE L1 -1023 6698 3701 2485 69 3 0 chrX 88230614 88230919 -74369011 - AluY SINE Alu -5 306 1 19554 175 17 16 chrX 88230919 88234576 -74365354 - L1MA1 LINE L1 -4020 3701 14 2173 102 3 7 chrX 88235546 88235850 -74364080 - AluSx SINE Alu -9 303 1 4005 164 20 0 chrX 88236571 88237260 -74362670 - L1PA16 LINE L1 -2 6164 5462 318 364 52 13 chrX 88237631 88237785 -74362145 - MIR3 SINE MIR -14 194 35 13469 139 12 73 chrX 88238585 88238758 -74361172 - Tigger1 DNA MER2_type -1 2417 2235 11307 35 0 1 chrX 88238758 88240894 -74359036 + L1PA4 LINE L1 4022 6155 0 13469 139 12 73 chrX 88240894 88243011 -74356919 - Tigger1 DNA MER2_type -183 2235 -9 1270 104 10 0 chrX 88243011 88243212 -74356718 + L1MA2 LINE L1 6102 6304 0 13469 139 12 73 chrX 88243212 88243266 -74356664 - Tigger1 DNA MER2_type -2427 4294967287 238 1689 157 7 28 chrX 88243266 88243553 -74356377 + AluSx SINE Alu 5 285 -27 13469 139 12 73 chrX 88243553 88243779 -74356151 - Tigger1 DNA MER2_type -2179 239 1 374 366 6 22 chrX 88244316 88244499 -74355431 - MARNA DNA Mariner -398 188 9 1752 190 30 3 chrX 88244835 88245135 -74354795 + L1PA13 LINE L1 2 309 -6478 * 2050 251 16 0 chrX 88245123 88245610 -74354320 + L1P LINE L1 2551 3045 -3101 18637 141 19 13 chrX 88245614 88251174 -74348756 + L1PA13 LINE L1 339 5990 -807 5916 106 12 2 chrX 88251173 88252038 -74347892 + L1PA13 LINE L1 5266 6138 -25 * 1143 184 40 0 chrX 88252038 88252266 -74347664 + MER58B DNA MER1_type 90 326 -15 21 0 0 0 chrX 88253840 88253861 -74346069 + AT_rich Low_complexity Low_complexity 1 21 0 970 265 109 3 chrX 88254232 88254545 -74345385 + L2 LINE L2 2556 2901 -413 2209 104 0 0 chrX 88255819 88256106 -74343824 - AluSc SINE Alu -22 287 1 7898 158 15 6 chrX 88256198 88258704 -74341226 - L1MA2 LINE L1 0 7723 5194 1291 187 39 4 chrX 88258721 88258951 -74340979 - AluJb SINE Alu -73 239 2 9410 174 20 12 chrX 88258952 88262149 -74337781 - L1MA2 LINE L1 -2360 5205 1983 2081 146 30 25 chrX 88262149 88262511 -74337419 + THE1B LTR MaLR 1 364 0 2742 71 11 0 chrX 88262511 88262875 -74337055 + THE1B-int LTR MaLR 1 368 -1212 285 29 0 0 chrX 88262877 88262911 -74337019 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 5999 99 20 16 chrX 88262911 88263855 -74336075 - L1PA8 LINE L1 -24 6148 5199 4294 127 16 0 chrX 88263844 88264468 -74335462 + THE1B-int LTR MaLR 350 983 -597 * 283 75 0 0 chrX 88264460 88264500 -74335430 + THE1B-int LTR MaLR 1541 1580 0 * 2177 143 34 14 chrX 88264500 88264856 -74335074 + THE1B LTR MaLR 1 363 -1 450 219 0 0 chrX 88264884 88264966 -74334964 - L1MA2 LINE L1 -5656 1909 1828 8771 190 40 10 chrX 88264975 88266612 -74333318 - L1MA2 LINE L1 -5859 1706 21 1102 146 9 9 chrX 88266817 88267030 -74332900 - L1MA4A LINE L1 -1 6302 6090 2208 112 3 0 chrX 88267535 88267829 -74332101 + AluSg SINE Alu 1 295 -15 28 0 0 0 chrX 88267998 88268026 -74331904 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrX 88268053 88268085 -74331845 + AT_rich Low_complexity Low_complexity 1 32 0 2189 99 3 13 chrX 88268480 88268784 -74331146 - AluSg1 SINE Alu -8 301 1 26 0 0 0 chrX 88269956 88269982 -74329948 + AT_rich Low_complexity Low_complexity 1 26 0 184 290 43 43 chrX 88271017 88271110 -74328820 - L2 LINE L2 -50 3263 3171 2198 106 3 0 chrX 88271503 88271796 -74328134 + AluSx SINE Alu 1 294 -18 763 272 30 5 chrX 88271903 88272105 -74327825 - MER63A DNA MER1_type -3 207 1 5518 64 21 18 chrX 88274559 88275323 -74324607 - MER4E LTR ERV1 0 766 1 25 51 0 0 chrX 88275477 88275516 -74324414 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chrX 88275545 88275581 -74324349 + AT_rich Low_complexity Low_complexity 1 36 0 2169 108 3 3 chrX 88275613 88275920 -74324010 - AluSq SINE Alu -6 307 1 658 233 14 20 chrX 88276308 88276454 -74323476 + MIR SINE MIR 4 148 -114 197 339 34 42 chrX 88276503 88276621 -74323309 + L2 LINE L2 3192 3308 -5 408 236 9 0 chrX 88277635 88277741 -74322189 + L1MB7 LINE L1 6066 6172 -12 2284 89 7 0 chrX 88279420 88279711 -74320219 - AluSg SINE Alu -14 296 4 312 364 0 8 chrX 88279799 88279920 -74320010 - MIR SINE MIR -109 153 34 2583 65 3 0 chrX 88280385 88280695 -74319235 + AluSp SINE Alu 2 312 -1 5839 84 19 12 chrX 88281408 88282551 -74317379 - L1PA13 LINE L1 -2 6161 4980 805 225 17 12 chrX 88284083 88284256 -74315674 + L1PB4 LINE L1 5980 6153 -3 22 0 0 0 chrX 88284476 88284498 -74315432 + AT_rich Low_complexity Low_complexity 1 22 0 261 233 48 78 chrX 88285135 88285238 -74314692 - MIR SINE MIR -56 206 107 5971 182 25 7 chrX 88286172 88287630 -74312300 - L1PA15 LINE L1 -3 6813 5298 180 97 0 0 chrX 88287630 88287661 -74312269 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5971 182 25 7 chrX 88287661 88288378 -74311552 - L1PA15 LINE L1 -1518 5298 4595 6654 43 12 0 chrX 88288378 88289194 -74310736 + L1PA7 LINE L1 5329 6154 0 3310 281 27 6 chrX 88289219 88290122 -74309808 - L1PA15 LINE L1 -4818 1969 1048 880 217 4 76 chrX 88290202 88290333 -74309597 - L1ME2 LINE L1 -16 6148 6044 369 0 0 0 chrX 88290333 88290374 -74309556 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 880 217 4 76 chrX 88290374 88290505 -74309425 - L1ME2 LINE L1 -120 6044 5905 13404 173 33 48 chrX 88290985 88292668 -74307262 - L1MA2 LINE L1 -450 7273 5568 1974 145 3 0 chrX 88292668 88292958 -74306972 + AluSx SINE Alu 2 292 -20 13404 173 33 48 chrX 88292958 88294401 -74305529 - L1MA2 LINE L1 -2155 5568 4106 2117 127 0 0 chrX 88294401 88294685 -74305245 - AluSx SINE Alu -28 284 1 13404 173 33 48 chrX 88294685 88295538 -74304392 - L1MA2 LINE L1 -3617 4106 3242 1979 147 0 14 chrX 88295538 88295831 -74304099 - AluSx SINE Alu -23 289 1 13404 173 33 48 chrX 88295831 88296645 -74303285 - L1MA2 LINE L1 -4481 3242 2418 2190 109 0 23 chrX 88296645 88296949 -74302981 - AluSg SINE Alu -12 298 2 13404 173 33 48 chrX 88296949 88299227 -74300703 - L1MA2 LINE L1 -5305 2418 11 327 383 10 31 chrX 88301092 88301285 -74298645 - MER5A DNA MER1_type 0 189 1 265 274 86 26 chrX 88301607 88301724 -74298206 - MIR SINE MIR -66 196 73 412 330 27 0 chrX 88302901 88303013 -74296917 - L2 LINE L2 -2 3270 3156 182 365 16 0 chrX 88303084 88303147 -74296783 + L2 LINE L2 3205 3268 -4 188 466 0 8 chrX 88303164 88303297 -74296633 + MIR SINE MIR 16 147 -61 543 31 0 0 chrX 88303451 88303516 -74296414 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 645 158 88 0 chrX 88304904 88305018 -74294912 - MLT1D LTR MaLR -22 483 360 772 263 29 10 chrX 88305052 88305257 -74294673 - MER82 DNA MER2_type -1 652 444 327 338 45 25 chrX 88305288 88305489 -74294441 + MIR SINE MIR 1 205 -57 393 250 0 21 chrX 88305509 88305605 -74294325 - MER82 DNA MER2_type -559 94 1 1505 226 83 37 chrX 88305716 88306199 -74293731 + MLT1D LTR MaLR 1 505 0 2755 171 38 6 chrX 88306436 88306961 -74292969 - MER34 LTR ERV1 0 542 1 239 158 49 85 chrX 88306986 88307068 -74292862 + MER69 DNA AcHobo 67 145 -2381 260 224 0 0 chrX 88307094 88307152 -74292778 + MER69 DNA AcHobo 2469 2526 0 333 140 0 0 chrX 88307557 88307614 -74292316 + (CA)n Simple_repeat Simple_repeat 2 58 0 613 306 5 24 chrX 88307797 88308003 -74291927 - MIR SINE MIR -48 214 13 2046 115 3 10 chrX 88309654 88309971 -74289959 + AluSg SINE Alu 1 310 0 2131 99 34 0 chrX 88310111 88310404 -74289526 + AluSp SINE Alu 1 303 -10 653 261 147 8 chrX 88310821 88311145 -74288785 - MER57A LTR ERV1 -4 399 60 238 338 12 0 chrX 88311140 88311220 -74288710 - MER93a LTR ERV1 -321 81 1 * 1187 215 56 34 chrX 88311667 88311990 -74287940 + MER33 DNA MER1_type 1 316 -8 218 167 37 0 chrX 88312088 88312142 -74287788 + A-rich Low_complexity Low_complexity 1 56 0 3809 93 50 32 chrX 88312606 88312935 -74286995 - LTR66 LTR ERVL 0 610 264 2084 113 13 3 chrX 88312935 88313237 -74286693 - AluSp SINE Alu -8 305 1 3809 93 50 32 chrX 88313237 88313506 -74286424 - LTR66 LTR ERVL -346 264 1 204 125 57 11 chrX 88313751 88313839 -74286091 + (TA)n Simple_repeat Simple_repeat 1 92 0 189 0 0 0 chrX 88314772 88314793 -74285137 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2443 92 0 0 chrX 88315363 88315667 -74284263 - AluSq SINE Alu -8 305 2 5644 68 14 14 chrX 88317265 88318031 -74281899 - MER4E LTR ERV1 0 766 1 1468 162 17 70 chrX 88318192 88318556 -74281374 - MER4A LTR ERV1 0 664 262 529 143 22 11 chrX 88318558 88318649 -74281281 - MER4A LTR ERV1 -572 92 1 2114 150 66 17 chrX 88318651 88319058 -74280872 + MSTA LTR MaLR 2 428 0 387 0 0 0 chrX 88319979 88320022 -74279908 + (TG)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chrX 88320022 88320053 -74279877 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chrX 88321267 88321300 -74278630 + AT_rich Low_complexity Low_complexity 1 33 0 405 58 0 0 chrX 88322273 88322325 -74277605 + (TG)n Simple_repeat Simple_repeat 2 53 0 2017 127 41 39 chrX 88322359 88322722 -74277208 - THE1B LTR MaLR 0 364 1 1539 179 35 7 chrX 88322983 88323273 -74276657 + AluJo SINE Alu 3 300 -12 213 208 13 52 chrX 88323522 88323577 -74276353 + (TA)n Simple_repeat Simple_repeat 2 55 -20 1297 193 83 31 chrX 88323577 88323904 -74276026 + MER2 DNA MER2_type 1 344 0 213 208 13 52 chrX 88323904 88323925 -74276005 + (TA)n Simple_repeat Simple_repeat 55 75 0 22 0 0 0 chrX 88324249 88324271 -74275659 + AT_rich Low_complexity Low_complexity 1 22 0 2329 97 3 7 chrX 88324482 88324792 -74275138 - AluSp SINE Alu -4 309 1 24 0 0 0 chrX 88325943 88325967 -74273963 + AT_rich Low_complexity Low_complexity 1 24 0 3364 62 0 7 chrX 88326085 88326536 -74273394 - LTR7 LTR ERV1 -2 448 1 2354 80 67 16 chrX 88326536 88326909 -74273021 - HERVH LTR ERV1 0 7713 7322 1438 110 18 9 chrX 88326907 88327125 -74272805 - HERVH LTR ERV1 -1894 5819 5600 * 4168 149 11 1 chrX 88327126 88327782 -74272148 - HERVH LTR ERV1 -2564 5149 4488 3296 117 4 6 chrX 88327784 88328287 -74271643 - HERVH LTR ERV1 -3720 3993 3492 848 151 20 0 chrX 88328279 88328425 -74271505 - HERVH LTR ERV1 -4425 3288 3140 * 15807 106 37 9 chrX 88328419 88331280 -74268650 - HERVH LTR ERV1 -4726 2987 1 3200 50 2 71 chrX 88331282 88331763 -74268167 - LTR7 LTR ERV1 -2 448 1 246 269 169 50 chrX 88331842 88332002 -74267928 - L1MC/D LINE L1 -2016 5792 5614 3275 124 53 50 chrX 88332617 88333221 -74266709 + MER4B LTR ERV1 5 610 0 1630 72 5 5 chrX 88333300 88333507 -74266423 + AluSp SINE Alu 1 207 -106 1875 72 0 0 chrX 88333508 88333743 -74266187 + MER4E LTR ERV1 532 766 0 2989 144 29 108 chrX 88334752 88334948 -74264982 - LTR8 LTR ERV1 0 691 481 2019 100 50 11 chrX 88334948 88335229 -74264701 + AluSx SINE Alu 1 292 -20 2989 144 29 108 chrX 88335229 88335782 -74264148 - LTR8 LTR ERV1 -210 481 1 556 122 260 8 chrX 88336233 88336356 -74263574 - MER4C LTR ERV1 -21 444 291 1132 162 139 32 chrX 88336413 88336722 -74263208 - MER4A LTR ERV1 -322 342 1 288 0 0 0 chrX 88337065 88337097 -74262833 + (A)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chrX 88337332 88337363 -74262567 + AT_rich Low_complexity Low_complexity 1 31 0 391 288 76 0 chrX 88337448 88337566 -74262364 - MIR3 SINE MIR -25 183 57 2348 50 3 3 chrX 88337594 88337902 -74262028 - AluY SINE Alu 0 308 1 1810 100 93 4 chrX 88340669 88340952 -74258978 - AluSx SINE Alu 0 308 3 1955 221 69 41 chrX 88341271 88341810 -74258120 - MLT2B3 LTR ERVL 0 554 1 180 77 0 0 chrX 88342414 88342440 -74257490 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1697 173 3 7 chrX 88342444 88342733 -74257197 - AluJo SINE Alu -24 288 1 26 0 0 0 chrX 88342736 88342762 -74257168 + AT_rich Low_complexity Low_complexity 1 26 0 295 403 0 0 chrX 88342818 88342957 -74256973 + MIR3 SINE MIR 64 202 -6 1998 117 7 3 chrX 88343005 88343295 -74256635 + AluSq SINE Alu 6 296 -17 2714 39 0 0 chrX 88344577 88344886 -74255044 - AluY SINE Alu -2 309 1 202 147 53 53 chrX 88344906 88344963 -74254967 + (TTAA)n Simple_repeat Simple_repeat 1 60 -15 1918 145 7 3 chrX 88344963 88345252 -74254678 - AluJb SINE Alu -22 290 1 202 147 53 53 chrX 88345252 88345269 -74254661 + (TTAA)n Simple_repeat Simple_repeat 59 75 0 25 75 0 0 chrX 88345495 88345548 -74254382 + AT_rich Low_complexity Low_complexity 1 53 0 2364 87 0 0 chrX 88345994 88346303 -74253627 - AluSg1 SINE Alu 0 309 1 2311 97 3 3 chrX 88346989 88347297 -74252633 - AluSx SINE Alu 0 312 5 1579 79 0 0 chrX 88347564 88347777 -74252153 - AluSc SINE Alu 0 305 93 2237 108 10 0 chrX 88347821 88348127 -74251803 - AluSq SINE Alu -4 309 1 2088 116 0 0 chrX 88348508 88348792 -74251138 + AluSx SINE Alu 9 292 -20 330 333 47 0 chrX 88349208 88349337 -74250593 + L2 LINE L2 2098 2232 -1082 677 324 124 26 chrX 88349337 88349962 -74249968 + L2 LINE L2 2358 3066 -247 579 259 60 88 chrX 88350040 88350110 -74249820 - MER102b DNA MER1_type -1087 341 271 2121 122 7 0 chrX 88350110 88350406 -74249524 + AluSp SINE Alu 1 298 -15 579 259 60 88 chrX 88350406 88350686 -74249244 - MER102b DNA MER1_type -1157 271 1 624 253 32 7 chrX 88350692 88350846 -74249084 + L2 LINE L2 3156 3313 0 1248 77 0 0 chrX 88351494 88351662 -74248268 - L1PA5 LINE L1 0 6154 5987 2225 106 0 0 chrX 88351690 88351974 -74247956 + AluSq SINE Alu 1 284 -29 404 73 0 0 chrX 88351974 88352004 -74247926 + AluYa8 SINE Alu 1 314 0 2231 114 7 0 chrX 88352176 88352483 -74247447 + AluSp SINE Alu 3 311 -2 30 59 0 0 chrX 88352483 88352534 -74247396 + AT_rich Low_complexity Low_complexity 1 51 0 252 0 0 0 chrX 88352556 88352584 -74247346 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chrX 88352630 88352652 -74247278 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 88353038 88353068 -74246862 + AT_rich Low_complexity Low_complexity 1 30 0 2160 116 0 7 chrX 88353364 88353666 -74246264 - AluSg SINE Alu -10 300 1 2158 110 0 7 chrX 88354244 88354544 -74245386 - AluSx SINE Alu -14 298 1 26 30 0 0 chrX 88354582 88354615 -74245315 + AT_rich Low_complexity Low_complexity 1 33 0 2141 93 4 4 chrX 88354956 88355236 -74244694 + AluSg SINE Alu 1 280 -30 1112 295 86 26 chrX 88355262 88355753 -74244177 - MER34 LTR ERV1 -18 524 5 219 139 0 0 chrX 88355810 88355846 -74244084 + (CA)n Simple_repeat Simple_repeat 1 36 0 2344 75 7 16 chrX 88356210 88356515 -74243415 + AluSp SINE Alu 1 302 -11 4594 68 54 34 chrX 88357274 88357835 -74242095 - PABL_A LTR ERV1 0 660 112 2479 64 0 40 chrX 88357835 88358161 -74241769 + AluSq SINE Alu 1 313 0 2267 84 0 17 chrX 88358169 88358468 -74241462 + AluSc SINE Alu 1 294 -15 684 67 0 0 chrX 88358468 88358558 -74241372 + (TA)n Simple_repeat Simple_repeat 2 91 0 4594 68 54 34 chrX 88358558 88358633 -74241297 - PABL_A LTR ERV1 -553 107 1 24 53 0 0 chrX 88358889 88358927 -74241003 + AT_rich Low_complexity Low_complexity 1 38 0 2164 102 7 0 chrX 88359206 88359511 -74240419 - AluSp SINE Alu -6 307 1 3685 98 21 70 chrX 88359636 88360267 -74239663 - MER4A LTR ERV1 0 600 1 3578 109 57 0 chrX 88360364 88360888 -74239042 - MER41A LTR ERV1 0 554 1 318 87 0 0 chrX 88361589 88361635 -74238295 + (TG)n Simple_repeat Simple_repeat 1 46 0 783 250 69 5 chrX 88362026 88362242 -74237688 - L2 LINE L2 -280 3033 2804 1123 237 24 14 chrX 88362260 88362555 -74237375 + MER58B DNA MER1_type 44 341 0 537 276 0 47 chrX 88362562 88362732 -74237198 - L2 LINE L2 -507 2807 2646 986 186 12 0 chrX 88362830 88363002 -74236928 - FAM SINE Alu 0 175 2 1532 143 10 45 chrX 88363374 88363688 -74236242 - L1MB8 LINE L1 -15 6163 5861 3272 91 9 2 chrX 88363693 88364155 -74235775 - L1PA10 LINE L1 -2 6166 5702 221 169 15 31 chrX 88364304 88364369 -74235561 + A-rich Low_complexity Low_complexity 1 64 0 2153 93 42 3 chrX 88365108 88365397 -74234533 - AluSg SINE Alu 0 310 11 230 286 18 18 chrX 88365973 88366085 -74233845 + (TA)n Simple_repeat Simple_repeat 2 113 0 21 0 0 0 chrX 88367485 88367506 -74232424 + AT_rich Low_complexity Low_complexity 1 21 0 2124 91 3 66 chrX 88368004 88368216 -74231714 - AluSp SINE Alu -15 298 111 300 91 0 0 chrX 88368216 88368260 -74231670 + (CA)n Simple_repeat Simple_repeat 1 44 0 2124 91 3 66 chrX 88368260 88368365 -74231565 - AluSp SINE Alu -202 111 1 323 219 10 0 chrX 88368706 88368802 -74231128 + (CA)n Simple_repeat Simple_repeat 2 98 0 1530 198 3 14 chrX 88368840 88369123 -74230807 + AluJb SINE Alu 1 280 -32 7444 102 5 4 chrX 88369125 88370149 -74229781 + THE1A-int LTR MaLR 556 1580 0 2453 91 3 0 chrX 88370149 88370479 -74229451 + THE1A LTR MaLR 1 331 -24 22 0 0 0 chrX 88371426 88371448 -74228482 + AT_rich Low_complexity Low_complexity 1 22 0 2145 121 0 0 chrX 88372562 88372860 -74227070 + AluSx SINE Alu 1 298 -14 198 0 0 0 chrX 88372958 88372980 -74226950 + (TTA)n Simple_repeat Simple_repeat 1 22 0 940 113 0 38 chrX 88373623 88373809 -74226121 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 392 158 13 0 chrX 88373810 88373886 -74226044 + CT-rich Low_complexity Low_complexity 1 77 0 1184 91 11 0 chrX 88373887 88374062 -74225868 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 2078 100 17 3 chrX 88374080 88374371 -74225559 - AluSx SINE Alu -17 295 1 23 33 0 0 chrX 88374470 88374500 -74225430 + AT_rich Low_complexity Low_complexity 1 30 0 229 156 0 0 chrX 88374606 88374651 -74225279 - LTR66 LTR ERVL -172 438 394 333 47 0 0 chrX 88375259 88375302 -74224628 + (TC)n Simple_repeat Simple_repeat 2 44 0 303 175 0 0 chrX 88375303 88375360 -74224570 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2987 251 29 23 chrX 88375427 88376331 -74223599 - L1ME1 LINE L1 -1 6165 5257 1143 261 123 20 chrX 88376412 88377014 -74222916 - L1ME1 LINE L1 -1465 4681 3937 2366 74 0 0 chrX 88377014 88377337 -74222593 - AluY SINE Alu 0 311 1 1143 261 123 20 chrX 88377337 88377436 -74222494 - L1ME1 LINE L1 -2209 3937 3850 21 0 0 0 chrX 88378242 88378263 -74221667 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chrX 88378538 88378583 -74221347 + AT_rich Low_complexity Low_complexity 1 45 0 432 51 0 0 chrX 88378597 88378656 -74221274 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2171 84 42 0 chrX 88378656 88378931 -74220999 - AluSx SINE Alu -22 290 1 225 0 0 0 chrX 88379183 88379208 -74220722 + (CA)n Simple_repeat Simple_repeat 2 26 0 3858 130 71 46 chrX 88380276 88381040 -74218890 + LTR1 LTR ERV1 1 783 -2 1131 237 98 117 chrX 88381247 88381463 -74218467 + L2 LINE L2 2374 2593 -720 2419 65 0 7 chrX 88381463 88381772 -74218158 - AluY SINE Alu -3 308 2 1131 237 98 117 chrX 88381772 88382516 -74217414 + L2 LINE L2 2593 3313 0 26 74 0 0 chrX 88383636 88383690 -74216240 + AT_rich Low_complexity Low_complexity 1 54 0 2145 118 0 3 chrX 88383778 88384082 -74215848 + AluSq SINE Alu 1 303 -10 1525 140 0 0 chrX 88384159 88384381 -74215549 + AluSg/x SINE Alu 85 306 -4 2225 95 0 0 chrX 88384495 88384779 -74215151 - AluSc SINE Alu -25 284 1 26 50 0 0 chrX 88385247 88385287 -74214643 + AT_rich Low_complexity Low_complexity 1 40 0 1606 154 164 18 chrX 88385485 88385919 -74214011 - LTR54B LTR ERV1 -1 497 1 183 129 0 0 chrX 88385928 88385959 -74213971 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5657 119 11 21 chrX 88386006 88386975 -74212955 - L1PB1 LINE L1 0 6867 5911 * 14017 129 109 8 chrX 88386956 88388037 -74211893 - L1PB1 LINE L1 -4152 2711 1740 2253 117 0 0 chrX 88388037 88388335 -74211595 - AluSx SINE Alu -12 300 3 14017 129 109 8 chrX 88388335 88389715 -74210215 - L1PB1 LINE L1 -5123 1740 2 2362 120 5 35 chrX 88390550 88390925 -74209005 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrX 88391945 88391966 -74207964 + AT_rich Low_complexity Low_complexity 1 21 0 1479 216 14 7 chrX 88392461 88392757 -74207173 + AluJo SINE Alu 1 298 -14 1557 193 0 0 chrX 88393839 88394093 -74205837 - AluJb SINE Alu -58 254 1 1463 180 88 11 chrX 88394126 88394410 -74205520 + AluJb SINE Alu 5 310 -2 514 321 65 0 chrX 88394526 88394710 -74205220 - MIR3 SINE MIR -5 203 8 246 234 0 0 chrX 88395537 88395584 -74204346 - L2 LINE L2 -9 3263 3217 337 259 21 159 chrX 88395654 88395843 -74204087 - L2 LINE L2 -55 3217 3055 1220 175 20 123 chrX 88396430 88396624 -74203306 - AluJo SINE Alu -5 307 161 2328 105 0 0 chrX 88396624 88396937 -74202993 - AluSq SINE Alu 0 313 1 1220 175 20 123 chrX 88396937 88397084 -74202846 - AluJo SINE Alu -151 161 1 223 180 0 0 chrX 88397171 88397209 -74202721 - MIR SINE MIR -63 145 111 293 259 47 12 chrX 88397254 88397339 -74202591 - MER5B DNA MER1_type -2 176 89 1365 221 13 22 chrX 88397343 88397445 -74202485 - L1M4 LINE L1 -1439 6126 6025 1983 136 17 3 chrX 88397445 88397740 -74202190 - AluSx SINE Alu -13 299 1 1365 221 13 22 chrX 88397740 88398321 -74201609 - L1M4 LINE L1 -1540 6025 5366 1180 127 23 0 chrX 88398366 88398539 -74201391 - FRAM SINE Alu -4 172 1 1847 166 20 3 chrX 88399690 88399992 -74199938 + AluJb SINE Alu 3 309 -3 2313 95 0 3 chrX 88400959 88401255 -74198675 - AluSp SINE Alu -18 295 1 213 65 0 0 chrX 88401580 88401611 -74198319 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 198 0 0 0 chrX 88401738 88401760 -74198170 + (TG)n Simple_repeat Simple_repeat 2 23 0 205 337 20 50 chrX 88401955 88402056 -74197874 - MIR3 SINE MIR -103 105 8 1808 171 0 7 chrX 88402964 88403257 -74196673 - AluSx SINE Alu -21 291 1 210 252 29 19 chrX 88403768 88403871 -74196059 + (TA)n Simple_repeat Simple_repeat 1 104 0 506 265 95 16 chrX 88405783 88405972 -74193958 + L2 LINE L2 1843 2046 -1268 12648 132 28 43 chrX 88406079 88406274 -74193656 - L1PA8A LINE L1 -340 5791 5595 2368 111 17 14 chrX 88406274 88406635 -74193295 - THE1B LTR MaLR 0 364 3 10048 122 14 30 chrX 88406637 88408244 -74191686 - THE1B-int LTR MaLR 0 1580 1 565 136 0 11 chrX 88408244 88408332 -74191598 - THE1B LTR MaLR 0 364 278 12648 132 28 43 chrX 88408332 88410603 -74189327 - L1PA8A LINE L1 -535 5596 3279 1393 270 36 43 chrX 88410605 88411284 -74188646 - L1P3 LINE L1 -5088 787 2 14229 188 30 15 chrX 88411308 88413626 -74186304 - L1M4 LINE L1 -2449 5116 2835 297 0 0 0 chrX 88413626 88413659 -74186271 + (TG)n Simple_repeat Simple_repeat 2 34 0 14229 188 30 15 chrX 88413659 88416077 -74183853 - L1M4 LINE L1 -4730 2835 15 558 351 12 0 chrX 88418623 88418791 -74181139 + MIR3 SINE MIR 30 199 -9 190 315 0 19 chrX 88421713 88421767 -74178163 - L2 LINE L2 0 3272 3220 780 237 9 24 chrX 88422459 88422670 -74177260 + MER3 DNA MER1_type 2 209 0 345 47 0 0 chrX 88424279 88424322 -74175608 + (TG)n Simple_repeat Simple_repeat 2 44 0 2404 47 3 31 chrX 88424538 88424858 -74175072 - AluY SINE Alu 0 311 1 186 103 0 0 chrX 88424990 88425019 -74174911 + (A)n Simple_repeat Simple_repeat 1 29 0 1547 133 0 27 chrX 88425396 88425659 -74174271 + L1PB1 LINE L1 5895 6150 -1 378 335 73 43 chrX 88425738 88425902 -74174028 - MIR3 SINE MIR -10 198 30 38 39 0 0 chrX 88425973 88426025 -74173905 + AT_rich Low_complexity Low_complexity 1 52 0 183 80 0 0 chrX 88428120 88428145 -74171785 + (GAA)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chrX 88430727 88430760 -74169170 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 88431637 88431658 -74168272 + AT_rich Low_complexity Low_complexity 1 21 0 2510 44 0 0 chrX 88432806 88433100 -74166830 + AluY SINE Alu 1 294 -17 2446 80 0 3 chrX 88433190 88433503 -74166427 + AluSx SINE Alu 1 312 0 2630 36 0 0 chrX 88435623 88435930 -74164000 + AluY SINE Alu 1 307 -4 22 115 0 0 chrX 88436110 88436223 -74163707 + AT_rich Low_complexity Low_complexity 1 113 0 2586 51 0 0 chrX 88436311 88436622 -74163308 + AluY SINE Alu 1 311 0 1675 157 0 33 chrX 88437995 88438294 -74161636 + AluSx SINE Alu 1 289 -23 24 0 0 0 chrX 88438294 88438318 -74161612 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chrX 88438824 88438851 -74161079 + AT_rich Low_complexity Low_complexity 1 27 0 2006 112 22 0 chrX 88438941 88439243 -74160687 - AluSx SINE Alu 0 308 1 21 36 0 0 chrX 88440318 88440346 -74159584 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chrX 88441563 88441588 -74158342 + (A)n Simple_repeat Simple_repeat 1 25 0 252 0 0 0 chrX 88441643 88441671 -74158259 + (TG)n Simple_repeat Simple_repeat 2 29 0 232 348 135 23 chrX 88441751 88442194 -74157736 + L2 LINE L2 2438 2930 -384 918 54 0 0 chrX 88442328 88442440 -74157490 - AluSx SINE Alu -7 303 192 981 100 0 7 chrX 88442443 88442583 -74157347 - AluSx SINE Alu -173 139 1 716 43 0 0 chrX 88442979 88443072 -74156858 - AluY SINE Alu -2 309 217 2676 26 0 0 chrX 88443579 88443885 -74156045 - AluY SINE Alu -5 306 1 421 182 64 11 chrX 88445663 88445943 -74153987 + (TA)n Simple_repeat Simple_repeat 1 295 0 1573 167 28 24 chrX 88446086 88446373 -74153557 - AluJb SINE Alu -24 288 1 346 218 10 89 chrX 88446497 88446598 -74153332 - MIR3 SINE MIR -18 190 98 217 329 38 0 chrX 88446586 88446665 -74153265 - MIR SINE MIR -3 259 178 * 266 241 0 0 chrX 88447817 88447875 -74152055 - L2 LINE L2 -4 3268 3211 230 350 160 5 chrX 88447906 88448100 -74151830 + MIR SINE MIR 28 251 -11 306 243 90 36 chrX 88448109 88448220 -74151710 - MIR SINE MIR -56 206 90 250 365 39 10 chrX 88448539 88448643 -74151287 - MIR SINE MIR -72 136 30 294 266 40 65 chrX 88448762 88448886 -74151044 + MIR SINE MIR 30 150 -112 2206 149 61 28 chrX 88448973 88449477 -74150453 - MLT2A2 LTR ERVL -8 546 5 7340 97 10 5 chrX 88449481 88450544 -74149386 - HERVL-A2 LTR ERVL 0 5654 4545 367 351 34 13 chrX 88450948 88451164 -74148766 + MIR SINE MIR 18 241 -21 248 333 46 32 chrX 88451182 88451372 -74148558 - MIR SINE MIR -66 196 5 23 0 0 0 chrX 88451702 88451725 -74148205 + AT_rich Low_complexity Low_complexity 1 23 0 698 339 86 29 chrX 88452151 88452851 -74147079 + L2 LINE L2 1806 2545 -769 443 325 110 18 chrX 88452857 88453085 -74146845 - MIR SINE MIR 0 262 14 387 382 27 23 chrX 88453105 88453364 -74146566 + L2 LINE L2 2560 2819 -495 198 209 0 0 chrX 88453585 88453628 -74146302 + (TG)n Simple_repeat Simple_repeat 2 44 0 488 81 0 70 chrX 88454113 88454199 -74145731 - MADE1 DNA Mariner 0 80 1 546 222 25 49 chrX 88454436 88454598 -74145332 - L1ME4a LINE L1 -4 6117 5960 433 267 74 11 chrX 88454601 88454777 -74145153 - L1ME4a LINE L1 -264 5857 5671 1187 189 0 5 chrX 88455011 88455264 -74144666 - AluJb SINE Alu 0 312 89 298 325 162 7 chrX 88456369 88456523 -74143407 - MER5B DNA MER1_type 0 178 1 192 40 0 0 chrX 88456694 88456719 -74143211 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 315 49 0 0 chrX 88457284 88457325 -74142605 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrX 88457324 88457356 -74142574 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 25 51 0 0 chrX 88457362 88457401 -74142529 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chrX 88457432 88457465 -74142465 + AT_rich Low_complexity Low_complexity 1 33 0 3146 89 2 0 chrX 88457545 88457984 -74141946 - L1PA13 LINE L1 -7 6156 5717 2768 124 2 47 chrX 88457984 88458445 -74141485 + L1P4 LINE L1 5041 5471 -697 2034 119 3 3 chrX 88458445 88458739 -74141191 + AluSx SINE Alu 1 294 -18 2768 124 2 47 chrX 88458739 88458945 -74140985 + L1P4 LINE L1 5471 5685 -483 23 0 0 0 chrX 88459509 88459532 -74140398 + AT_rich Low_complexity Low_complexity 1 23 0 1402 94 70 4 chrX 88459690 88459934 -74139996 - L1MA9 LINE L1 0 6312 6053 2540 118 5 19 chrX 88461233 88461656 -74138274 - L1MA3 LINE L1 0 6305 5889 4536 176 27 8 chrX 88461656 88462571 -74137359 - L1 LINE L1 -1445 4701 3769 14240 204 21 9 chrX 88462593 88467921 -74132009 + L1PBa LINE L1 1 5531 -1331 688 188 30 0 chrX 88468015 88468148 -74131782 - MLT1E2 LTR MaLR 0 626 490 6018 14 1 0 chrX 88468691 88469381 -74130549 - L1HS LINE L1 0 6155 5465 5287 20 10 0 chrX 88469371 88470104 -74129826 + L1P1 LINE L1 4753 5489 -666 * 4459 136 26 11 chrX 88472490 88473254 -74126676 - L1MC1 LINE L1 0 6333 5558 662 269 151 9 chrX 88473518 88473730 -74126200 - MIR SINE MIR 0 262 21 1903 125 33 111 chrX 88473772 88474140 -74125790 + Charlie3 DNA MER1_type 1 2712 0 902 107 23 0 chrX 88474429 88474560 -74125370 + HERVL-A2 LTR ERVL 5520 5653 -1 2077 160 49 31 chrX 88474561 88475104 -74124826 + MLT2A2 LTR ERVL 1 554 0 1865 100 55 17 chrX 88475109 88475399 -74124531 + L1PA16 LINE L1 5864 6164 -2 1590 239 100 28 chrX 88475421 88475882 -74124048 + MLT1D LTR MaLR 12 505 0 1964 163 22 8 chrX 88476421 88476782 -74123148 - MER47A DNA MER2_type 0 366 1 1182 241 14 58 chrX 88477354 88477407 -74122523 - MLT2D LTR ERVL 0 414 360 408 20 0 0 chrX 88477407 88477456 -74122474 + (CA)n Simple_repeat Simple_repeat 2 50 0 1182 241 14 58 chrX 88477456 88477750 -74122180 - MLT2D LTR ERVL -54 360 82 2095 143 40 3 chrX 88478029 88478406 -74121524 - L1MA5A LINE L1 -5 6292 5902 900 274 46 0 chrX 88478641 88478860 -74121070 - MIR SINE MIR -29 233 5 306 243 97 29 chrX 88478924 88479027 -74120903 - MIR3 SINE MIR -5 203 94 22 88 0 0 chrX 88480414 88480471 -74119459 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chrX 88480577 88480619 -74119311 + AT_rich Low_complexity Low_complexity 1 42 0 723 274 104 9 chrX 88480675 88480905 -74119025 - MIR SINE MIR -9 253 2 347 155 0 14 chrX 88481842 88481913 -74118017 + (TA)n Simple_repeat Simple_repeat 2 71 0 311 65 22 0 chrX 88482472 88482518 -74117412 + (TG)n Simple_repeat Simple_repeat 1 47 0 433 329 128 9 chrX 88482726 88482945 -74116985 + L3 LINE CR1 1331 1575 -2 2400 108 13 13 chrX 88483153 88483532 -74116398 - L1PA11 LINE L1 -3 6171 5793 358 321 9 32 chrX 88483668 88483966 -74115964 + GA-rich Low_complexity Low_complexity 1 291 0 296 111 19 0 chrX 88483985 88484039 -74115891 + (TG)n Simple_repeat Simple_repeat 1 55 0 3118 147 66 9 chrX 88486923 88487500 -74112430 - MER4B LTR ERV1 0 610 1 491 0 17 0 chrX 88487870 88487929 -74112001 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 41 72 0 0 chrX 88488220 88488303 -74111627 + AT_rich Low_complexity Low_complexity 1 83 0 4891 266 59 52 chrX 88489566 88491308 -74108622 + L1MEc LINE L1 22 1751 -4645 1966 153 110 15 chrX 88491308 88491699 -74108231 + MSTA LTR MaLR 1 428 0 4891 266 59 52 chrX 88491699 88491889 -74108041 + L1MEc LINE L1 1751 1938 -4458 1432 194 25 18 chrX 88491889 88492172 -74107758 - AluJb SINE Alu -25 287 3 4891 266 59 52 chrX 88492172 88492349 -74107581 + L1MEc LINE L1 1938 2146 -4250 782 109 0 0 chrX 88492351 88492461 -74107469 + L1MA1 LINE L1 6099 6208 -94 4725 262 44 39 chrX 88492463 88494251 -74105679 + L1MEc LINE L1 2153 3910 -2305 3117 121 32 26 chrX 88494251 88494782 -74105148 + L1MC1 LINE L1 5798 6331 -2 4725 262 44 39 chrX 88494782 88495029 -74104901 + L1MEc LINE L1 3910 4154 -2061 405 0 0 0 chrX 88495363 88495408 -74104522 + (TG)n Simple_repeat Simple_repeat 2 46 0 363 44 0 0 chrX 88496388 88496433 -74103497 + (TA)n Simple_repeat Simple_repeat 2 46 0 208 333 135 10 chrX 88547205 88547301 -74052629 + L2 LINE L2 3126 3233 -39 705 332 17 13 chrX 88547395 88547627 -74052303 + MIR SINE MIR 19 251 -11 1312 231 104 3 chrX 88548208 88548572 -74051358 + MER57A LTR ERV1 3 403 0 183 353 0 98 chrX 88549138 88549271 -74050659 - L2 LINE L2 -12 3260 3141 259 189 113 0 chrX 88549535 88549588 -74050342 - MIR SINE MIR -109 99 41 2682 174 14 124 chrX 88549883 88550595 -74049335 - MER39 LTR ERV1 0 707 74 630 315 8 43 chrX 88552275 88552510 -74047420 + MIR SINE MIR 2 228 -34 549 60 84 0 chrX 88554206 88554417 -74045513 + (TA)n Simple_repeat Simple_repeat 1 228 0 28 0 0 0 chrX 88556501 88556529 -74043401 + AT_rich Low_complexity Low_complexity 1 28 0 2253 67 3 0 chrX 88556529 88556811 -74043119 - AluY SINE Alu -28 283 1 186 43 0 0 chrX 88558362 88558385 -74041545 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chrX 88558964 88558987 -74040943 + AT_rich Low_complexity Low_complexity 1 23 0 31 82 0 0 chrX 88560952 88561025 -74038905 + AT_rich Low_complexity Low_complexity 1 73 0 584 273 20 87 chrX 88561099 88561352 -74038578 + MIR SINE MIR 27 262 0 253 317 14 63 chrX 88562267 88562409 -74037521 + MIR SINE MIR 125 259 -3 253 252 96 61 chrX 88562483 88562598 -74037332 + MIR SINE MIR 143 261 -1 1067 230 197 111 chrX 88563796 88564384 -74035546 - MLT1E2 LTR MaLR -9 617 7 24 53 0 0 chrX 88564493 88564531 -74035399 + AT_rich Low_complexity Low_complexity 1 38 0 328 248 96 0 chrX 88565559 88565684 -74034246 - L1MD1 LINE L1 -2 6240 6104 * 589 153 0 20 chrX 88565683 88565781 -74034149 - L1MD2 LINE L1 -197 6162 6067 965 88 0 8 chrX 88565781 88565906 -74034024 + AluSg/x SINE Alu 171 294 -18 3409 236 67 17 chrX 88565906 88566061 -74033869 - L1MD2 LINE L1 -282 6077 5931 703 203 0 0 chrX 88566061 88566179 -74033751 + FLAM_A SINE Alu 1 118 -15 3409 236 67 17 chrX 88566179 88566568 -74033362 - L1MD2 LINE L1 -428 5931 5563 180 0 0 0 chrX 88566568 88566588 -74033342 + (TTA)n Simple_repeat Simple_repeat 1 20 0 3409 236 67 17 chrX 88566588 88567431 -74032499 - L1MD2 LINE L1 -796 5563 4617 782 253 43 40 chrX 88568361 88568614 -74031316 - MIR SINE MIR 0 262 9 256 167 21 0 chrX 88568611 88568659 -74031271 + L2 LINE L2 3265 3313 0 * 231 385 37 30 chrX 88569299 88569434 -74030496 + L2 LINE L2 3137 3272 0 2175 109 6 6 chrX 88570135 88570447 -74029483 - AluSx SINE Alu 0 312 1 28 48 0 0 chrX 88570551 88570593 -74029337 + AT_rich Low_complexity Low_complexity 1 42 0 252 275 125 0 chrX 88570724 88570804 -74029126 - MIR SINE MIR -94 168 79 1519 203 97 32 chrX 88571239 88571672 -74028258 - MLT1C LTR MaLR 0 467 7 1358 117 26 9 chrX 88572232 88572462 -74027468 - L1MA4 LINE L1 0 6300 6067 2012 95 6 44 chrX 88572484 88572800 -74027130 - AluSx SINE Alu -8 304 1 267 103 0 0 chrX 88572881 88572920 -74027010 + (TA)n Simple_repeat Simple_repeat 1 39 0 2634 185 14 84 chrX 88574096 88574824 -74025106 + L1MB7 LINE L1 5499 6175 -9 453 290 173 14 chrX 88574839 88575053 -74024877 - MIR SINE MIR 0 262 15 363 239 0 104 chrX 88575134 88575268 -74024662 - L2 LINE L2 -1 3312 3193 587 294 36 26 chrX 88575275 88575469 -74024461 + MIR SINE MIR 18 213 -49 186 133 0 0 chrX 88575550 88575580 -74024350 + (CAT)n Simple_repeat Simple_repeat 3 32 0 224 367 13 25 chrX 88575631 88575710 -74024220 - MIR SINE MIR -115 93 16 222 37 0 0 chrX 88576171 88576198 -74023732 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 238 0 0 chrX 88576240 88576282 -74023648 - L2 LINE L2 0 3313 3272 6108 160 20 3 chrX 88576940 88578044 -74021886 - L1 LINE L1 -1195 4951 3829 * 17326 48 58 4 chrX 88578038 88580266 -74019664 - L1P LINE L1 -3797 2349 1 447 145 0 0 chrX 88580267 88580336 -74019594 - L1 LINE L1 -2301 3845 3777 2497 115 6 0 chrX 88580342 88580699 -74019231 - L1PA11 LINE L1 -2 6172 5814 2426 142 49 2 chrX 88580745 88581154 -74018776 - MSTA LTR MaLR 0 428 1 8615 178 42 6 chrX 88581154 88582160 -74017770 - MSTA-int LTR MaLR 0 1651 566 2352 89 0 0 chrX 88582160 88582463 -74017467 - AluY SINE Alu -8 303 1 8615 178 42 6 chrX 88582463 88583050 -74016880 - MSTA-int LTR MaLR -1085 566 1 2580 134 34 2 chrX 88583056 88583465 -74016465 - MSTA LTR MaLR -6 422 1 4709 216 25 15 chrX 88583477 88584496 -74015434 - L1M1 LINE L1 -6535 1030 1 514 114 0 0 chrX 88587457 88587536 -74012394 - MADE1 DNA Mariner -1 79 1 180 152 0 0 chrX 88588327 88588360 -74011570 + GA-rich Low_complexity Low_complexity 2 34 0 606 169 19 52 chrX 88588693 88588847 -74011083 - MER92A LTR ERV1 0 412 264 769 200 0 27 chrX 88588880 88589030 -74010900 - FRAM SINE Alu -30 146 1 598 284 6 12 chrX 88589089 88589258 -74010672 - MER92A LTR ERV1 -234 178 11 204 231 0 0 chrX 88589364 88589416 -74010514 + (TA)n Simple_repeat Simple_repeat 1 52 0 655 217 132 0 chrX 88589429 88589581 -74010349 - MIR SINE MIR -59 203 32 2224 114 3 0 chrX 88590535 88590841 -74009089 - AluSq SINE Alu -6 307 1 1123 223 109 30 chrX 88591492 88591859 -74008071 - MSTA LTR MaLR 0 396 1 1519 122 5 5 chrX 88592092 88592305 -74007625 - AluSg/x SINE Alu -15 295 83 25 0 0 0 chrX 88593501 88593526 -74006404 + AT_rich Low_complexity Low_complexity 1 25 0 1843 117 22 50 chrX 88593904 88594221 -74005709 - AluSx SINE Alu -4 308 1 2929 103 64 0 chrX 88594286 88594723 -74005207 - MER4C LTR ERV1 0 465 1 2167 161 35 54 chrX 88594723 88595128 -74004802 - MER34C LTR ERV1 -134 451 55 2151 145 53 3 chrX 88595128 88595487 -74004443 - MER51B LTR ERV1 0 377 1 2167 161 35 54 chrX 88595487 88595541 -74004389 - MER34C LTR ERV1 -530 55 1 205 368 0 0 chrX 88596512 88596580 -74003350 - L2 LINE L2 -2 3270 3203 2555 99 58 21 chrX 88596881 88597313 -74002617 - LTR7 LTR ERV1 -2 448 1 2396 78 65 5 chrX 88597313 88597683 -74002247 - HERVH LTR ERV1 0 7713 7322 1351 131 18 9 chrX 88597681 88597902 -74002028 - HERVH LTR ERV1 -1894 5819 5597 * 4235 147 3 1 chrX 88597899 88598560 -74001370 - HERVH LTR ERV1 -2564 5149 4488 3259 122 6 2 chrX 88598562 88599062 -74000868 - HERVH LTR ERV1 -3720 3993 3492 788 170 27 0 chrX 88599052 88599199 -74000731 - HERVH LTR ERV1 -4423 3290 3140 * 20262 100 15 7 chrX 88599196 88602157 -73997773 - HERVH LTR ERV1 -4729 2984 1 2545 99 58 21 chrX 88602159 88602591 -73997339 - LTR7 LTR ERV1 -2 448 1 2417 82 3 0 chrX 88602603 88602907 -73997023 - AluSp SINE Alu -8 305 1 1821 123 3 134 chrX 88603683 88604064 -73995866 + MER7A DNA MER2_type 1 329 -17 1619 138 107 0 chrX 88604065 88604360 -73995570 + AluSg SINE Alu 1 322 0 28 29 0 0 chrX 88604564 88604599 -73995331 + AT_rich Low_complexity Low_complexity 1 35 0 253 211 0 0 chrX 88605649 88605701 -73994229 - L2 LINE L2 0 3313 3262 197 255 0 21 chrX 88605807 88605901 -73994029 + GA-rich Low_complexity Low_complexity 1 92 0 23 33 0 0 chrX 88606198 88606228 -73993702 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrX 88608204 88608225 -73991705 + AT_rich Low_complexity Low_complexity 1 21 0 2403 72 3 0 chrX 88609043 88609349 -73990581 - AluSp SINE Alu -6 307 1 2966 107 77 8 chrX 88609512 88609990 -73989940 - MER9 LTR ERVK 0 511 1 277 218 36 18 chrX 88610233 88610343 -73989587 + A-rich Low_complexity Low_complexity 3 114 0 401 191 0 135 chrX 88610663 88610789 -73989141 + MIR SINE MIR 124 232 -30 1954 119 3 0 chrX 88610967 88611261 -73988669 - L1PA8 LINE L1 0 6172 5878 2086 145 119 10 chrX 88611548 88611934 -73987996 + MSTA LTR MaLR 1 428 0 1089 79 118 0 chrX 88612184 88612336 -73987594 - AluJb SINE Alu -10 302 133 23 0 0 0 chrX 88612981 88613004 -73986926 + AT_rich Low_complexity Low_complexity 1 23 0 1788 166 0 25 chrX 88614686 88615006 -73984924 - AluJb SINE Alu 0 312 1 216 135 0 0 chrX 88615664 88615701 -73984229 + (A)n Simple_repeat Simple_repeat 1 37 0 2383 57 3 0 chrX 88617139 88617438 -73982492 + AluY SINE Alu 1 300 -11 1631 168 63 20 chrX 88617545 88617896 -73982034 + L1MC3 LINE L1 7400 7765 -20 1891 136 0 7 chrX 88617919 88618240 -73981690 - AluSq SINE Alu 0 319 1 1941 231 49 49 chrX 88619108 88619529 -73980401 - L1M4 LINE L1 -1815 5142 4722 381 22 0 0 chrX 88619529 88619575 -73980355 + (TG)n Simple_repeat Simple_repeat 2 47 0 1941 231 49 49 chrX 88619575 88619594 -73980336 - L1M4 LINE L1 -2235 4722 4704 2173 97 3 10 chrX 88619594 88619893 -73980037 + AluSq SINE Alu 1 297 -16 1941 231 49 49 chrX 88619893 88620044 -73979886 - L1M4 LINE L1 -2252 4705 4550 * 5139 130 5 0 chrX 88620036 88620815 -73979115 - L1PA15 LINE L1 -2 6814 6032 11601 208 13 8 chrX 88620820 88622513 -73977417 - L1PA15 LINE L1 -869 5928 4216 4671 79 23 24 chrX 88622513 88623174 -73976756 - PABL_A LTR ERV1 0 660 1 11601 208 13 8 chrX 88623174 88624046 -73975884 - L1PA15 LINE L1 -2581 4216 3350 286 24 0 0 chrX 88624051 88624092 -73975838 + L1MA3 LINE L1 6265 6305 0 1172 206 0 72 chrX 88624100 88624246 -73975684 - L1PA15 LINE L1 -5026 1761 1606 2023 119 14 3 chrX 88624246 88624572 -73975358 - AluSg SINE Alu 0 330 2 1172 206 0 72 chrX 88624572 88624758 -73975172 - L1PA15 LINE L1 -5181 1606 1451 * 2791 247 9 28 chrX 88624750 88625429 -73974501 - L1PA15 LINE L1 -5920 867 202 360 0 0 0 chrX 88625443 88625483 -73974447 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 986 208 22 18 chrX 88625483 88625701 -73974229 - L1M4 LINE L1 -2406 4551 4330 1683 310 49 19 chrX 88625702 88626318 -73973612 - L1M4 LINE L1 -6215 644 11 195 359 28 21 chrX 88626422 88626564 -73973366 - L2 LINE L2 -498 2816 2674 380 370 57 30 chrX 88626791 88627194 -73972736 - L2 LINE L2 -924 2390 1977 25 0 0 0 chrX 88628003 88628028 -73971902 + AT_rich Low_complexity Low_complexity 1 25 0 320 333 0 39 chrX 88628360 88628513 -73971417 - MIR3 SINE MIR -1 207 61 1248 193 43 114 chrX 88629057 88629451 -73970479 - MLT1B LTR MaLR -24 366 1 7535 224 49 29 chrX 88629748 88630458 -73969472 + L1MB3 LINE L1 2667 3362 -2821 2006 102 0 35 chrX 88630458 88630743 -73969187 + AluSg SINE Alu 3 277 -33 7535 224 49 29 chrX 88630743 88633481 -73966449 + L1MB3 LINE L1 3362 6183 0 1795 118 78 0 chrX 88634208 88634479 -73965451 - AluSq SINE Alu -15 298 7 183 269 0 77 chrX 88636931 88637009 -73962921 - L3 LINE CR1 -1328 249 178 330 287 80 40 chrX 88637067 88637217 -73962713 - MIR SINE MIR -98 164 9 6728 145 49 8 chrX 88637379 88638561 -73961369 - Tigger3b DNA MER2_type 0 1231 1 1660 197 3 0 chrX 88639337 88639632 -73960298 - AluJb SINE Alu -16 296 1 255 276 89 49 chrX 88639876 88639999 -73959931 - L2 LINE L2 -9 3263 3136 21 57 0 0 chrX 88639999 88640034 -73959896 + AT_rich Low_complexity Low_complexity 1 35 0 333 322 73 8 chrX 88641494 88641739 -73958191 + MIR SINE MIR 2 262 0 231 170 0 0 chrX 88641741 88641788 -73958142 + (TAG)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chrX 88643114 88643135 -73956795 + AT_rich Low_complexity Low_complexity 1 21 0 828 152 8 0 chrX 88643330 88643455 -73956475 - FLAM_C SINE Alu -17 126 1 341 309 27 40 chrX 88643455 88643604 -73956326 + MIR SINE MIR 116 262 0 24 32 0 0 chrX 88643614 88643645 -73956285 + AT_rich Low_complexity Low_complexity 1 31 0 291 54 0 0 chrX 88644191 88644228 -73955702 + (TC)n Simple_repeat Simple_repeat 2 38 0 5208 141 18 21 chrX 88644450 88644981 -73954949 - MER49 LTR ERV1 -1 922 392 2528 51 0 13 chrX 88644981 88645292 -73954638 - AluY SINE Alu -4 307 1 5208 141 18 21 chrX 88645292 88645684 -73954246 - MER49 LTR ERV1 -531 392 1 232 326 72 36 chrX 88646150 88646343 -73953587 - MIR SINE MIR -52 210 11 21 0 0 0 chrX 88647351 88647372 -73952558 + AT_rich Low_complexity Low_complexity 1 21 0 835 20 0 0 chrX 88647372 88647470 -73952460 - L1PA3 LINE L1 -3 6152 6055 2703 137 50 0 chrX 88648482 88648920 -73951010 - L1PA15 LINE L1 -13 6152 5693 796 228 106 129 chrX 88649811 88650342 -73949588 - MLT1H1 LTR MaLR -3 552 3 31 44 0 0 chrX 88650391 88650436 -73949494 + AT_rich Low_complexity Low_complexity 1 45 0 258 32 0 0 chrX 88650436 88650467 -73949463 + (GA)n Simple_repeat Simple_repeat 2 32 0 743 332 19 25 chrX 88651785 88652104 -73947826 + L1ME1 LINE L1 35 351 -6045 * 3380 257 37 13 chrX 88652101 88653189 -73946741 + L1ME1 LINE L1 3056 4169 -2046 4877 115 8 1 chrX 88653189 88653931 -73945999 + L1MA3 LINE L1 5559 6305 0 2779 245 57 26 chrX 88653946 88654887 -73945043 + L1ME1 LINE L1 5260 6230 -5 655 189 7 7 chrX 88655060 88655213 -73944717 + CT-rich Low_complexity Low_complexity 2 154 0 215 200 44 0 chrX 88656179 88656224 -73943706 + (CATG)n Simple_repeat Simple_repeat 4 50 0 363 44 0 0 chrX 88656517 88656562 -73943368 + (CAG)n Simple_repeat Simple_repeat 1 45 0 545 275 23 0 chrX 88656566 88656697 -73943233 + MER5A DNA MER1_type 50 183 -6 389 353 5 33 chrX 88656893 88657077 -73942853 + MIR SINE MIR 41 219 -43 4330 150 23 1 chrX 88657775 88658501 -73941429 + Tigger2 DNA MER2_type 3 744 -1974 1625 123 20 4 chrX 88658568 88658821 -73941109 + Tigger2 DNA MER2_type 2462 2718 0 345 281 141 8 chrX 88661261 88661382 -73938548 - L2 LINE L2 -2 3270 3134 1993 228 0 0 chrX 88662726 88663195 -73936735 + L1 LINE L1 4652 5120 -1026 2628 137 31 0 chrX 88663196 88663611 -73936319 - MSTA LTR MaLR 0 428 1 8029 189 45 2 chrX 88663611 88665190 -73934740 - MSTA-int LTR MaLR 0 1651 6 2552 143 34 0 chrX 88665195 88665609 -73934321 - MSTA LTR MaLR 0 428 1 4863 156 14 21 chrX 88665609 88666664 -73933266 + L1PA16 LINE L1 5117 6165 -1 23 33 0 0 chrX 88668071 88668101 -73931829 + AT_rich Low_complexity Low_complexity 1 30 0 185 370 41 0 chrX 88668176 88668249 -73931681 - MIR SINE MIR -114 94 19 28 0 0 0 chrX 88670922 88670950 -73928980 + AT_rich Low_complexity Low_complexity 1 28 0 267 247 13 26 chrX 88672132 88672209 -73927721 - MIR SINE MIR -183 79 4 2031 122 3 3 chrX 88672302 88672633 -73927297 - AluSq SINE Alu 0 331 1 711 255 35 53 chrX 88673201 88673422 -73926508 + L2 LINE L2 2633 2849 -465 2040 151 5 45 chrX 88673422 88673800 -73926130 + MER47A DNA MER2_type 4 366 0 711 255 35 53 chrX 88673800 88673860 -73926070 + L2 LINE L2 2849 2909 -405 2917 145 58 2 chrX 88673868 88674399 -73925531 - L1PBa LINE L1 -4921 1942 1382 978 223 0 0 chrX 88674385 88674582 -73925348 - L1PBa LINE L1 -6666 197 1 * 245 286 11 44 chrX 88676002 88676093 -73923837 - MIR3 SINE MIR -4 204 117 3032 153 46 9 chrX 88676125 88676842 -73923088 - L1PBa LINE L1 -4921 1942 1 375 346 73 28 chrX 88678243 88678422 -73921508 - MIR3 SINE MIR -7 201 15 329 259 56 19 chrX 88678678 88678786 -73921144 - MARNA DNA Mariner -355 231 120 2632 17 30 0 chrX 88678942 88679244 -73920686 + AluYa5 SINE Alu 1 311 0 1982 176 19 3 chrX 88681191 88681550 -73918380 + MLT1A1 LTR MaLR 1 365 0 326 277 119 64 chrX 88681858 88682060 -73917870 - L2 LINE L2 -903 2411 2199 190 245 20 0 chrX 88682096 88682145 -73917785 - L2 LINE L2 0 3313 3264 211 233 33 17 chrX 88684496 88684556 -73915374 - L2 LINE L2 -3 3310 3250 5954 215 34 27 chrX 88685446 88687960 -73911970 - L1MB3 LINE L1 -9 7593 5052 3485 135 31 3 chrX 88687960 88688536 -73911394 - Tigger3b DNA MER2_type -1 1230 639 811 155 72 61 chrX 88688553 88688734 -73911196 + FAM SINE Alu 1 47 -2 2636 129 27 18 chrX 88688734 88689184 -73910746 - Tigger3b DNA MER2_type -605 626 173 729 176 0 0 chrX 88689219 88689338 -73910592 - FLAM_C SINE Alu -24 119 1 592 153 0 0 chrX 88689338 88689423 -73910507 - Tigger3b DNA MER2_type -1050 181 97 19967 146 10 86 chrX 88689426 88693759 -73906171 - L1P LINE L1 -2140 4006 2 1990 252 49 56 chrX 88693753 88694247 -73905683 - L1MB3 LINE L1 -3053 4512 4016 * 2411 94 0 0 chrX 88694247 88694554 -73905376 - AluSg SINE Alu -3 307 1 1990 252 49 56 chrX 88694554 88695064 -73904866 - L1MB3 LINE L1 -3549 4016 3514 531 277 87 31 chrX 88695369 88695564 -73904366 - L2 LINE L2 -5 3308 3103 205 250 0 0 chrX 88696361 88696413 -73903517 + (CAG)n Simple_repeat Simple_repeat 1 52 0 2879 173 23 8 chrX 88696844 88697375 -73902555 - MER34 LTR ERV1 -3 539 1 24 0 0 0 chrX 88697875 88697899 -73902031 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrX 88698865 88698886 -73901044 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chrX 88698939 88698964 -73900966 + (TA)n Simple_repeat Simple_repeat 1 25 0 2358 90 0 10 chrX 88698964 88699274 -73900656 - AluY SINE Alu -4 307 1 2338 88 0 0 chrX 88699410 88699718 -73900212 - AluSg1 SINE Alu -1 308 1 180 0 0 0 chrX 88700536 88700556 -73899374 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chrX 88701669 88701696 -73898234 + AT_rich Low_complexity Low_complexity 1 27 0 2198 164 8 14 chrX 88702335 88702702 -73897228 - MLT1A1 LTR MaLR 0 365 1 5309 183 155 49 chrX 88702787 88704289 -73895641 + MER52A LTR ERV1 1 1755 0 206 136 23 0 chrX 88704706 88704750 -73895180 + (TG)n Simple_repeat Simple_repeat 1 45 0 1148 211 4 21 chrX 88706807 88707049 -73892881 + MER58B DNA MER1_type 103 340 -1 5434 51 1 0 chrX 88707123 88707793 -73892137 - L1PA7 LINE L1 0 6154 5484 7100 54 9 0 chrX 88707125 88708099 -73891831 - L1PA7 LINE L1 0 6154 5176 5099 79 13 1 chrX 88708192 88708875 -73891055 - LTR8 LTR ERV1 0 691 1 1594 164 52 4 chrX 88709349 88709640 -73890290 + AluJb SINE Alu 1 304 0 780 291 44 63 chrX 88710226 88710655 -73889275 - MLT1G LTR MaLR 0 590 170 21 36 0 0 chrX 88710861 88710889 -73889041 + AT_rich Low_complexity Low_complexity 1 28 0 34 55 0 0 chrX 88712055 88712110 -73887820 + AT_rich Low_complexity Low_complexity 1 55 0 288 0 0 0 chrX 88714167 88714199 -73885731 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chrX 88714835 88714856 -73885074 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chrX 88716058 88716108 -73883822 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chrX 88717362 88717402 -73882528 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrX 88718569 88718598 -73881332 + AT_rich Low_complexity Low_complexity 1 29 0 403 248 58 29 chrX 88719252 88719397 -73880533 + MIR3 SINE MIR 55 188 -27 331 264 0 0 chrX 88719443 88719515 -73880415 - MIR3 SINE MIR -17 191 120 2120 103 10 13 chrX 88720358 88720659 -73879271 + AluSx SINE Alu 1 300 -12 471 84 24 84 chrX 88721265 88721348 -73878582 - AluSg/x SINE Alu -18 294 217 609 289 36 6 chrX 88722496 88722662 -73877268 + MIR SINE MIR 34 204 -58 2441 54 0 3 chrX 88722707 88723005 -73876925 + AluY SINE Alu 1 297 -14 363 215 21 21 chrX 88723086 88723179 -73876751 - MER5A DNA MER1_type -88 101 9 2297 51 0 34 chrX 88723534 88723847 -73876083 - AluY SINE Alu 0 303 1 3495 184 26 4 chrX 88725934 88726637 -73873293 + L1P LINE L1 4492 5209 -937 246 32 0 0 chrX 88727126 88727157 -73872773 + (T)n Simple_repeat Simple_repeat 1 31 0 330 316 33 13 chrX 88728868 88729020 -73870910 + MIR SINE MIR 84 238 -24 2511 39 0 16 chrX 88729609 88729914 -73870016 + AluY SINE Alu 1 300 -11 433 264 90 68 chrX 88729961 88730299 -73869631 - L1MC4a LINE L1 -171 5950 5603 2038 114 13 19 chrX 88730438 88730753 -73869177 + AluSq SINE Alu 1 313 0 333 303 105 24 chrX 88730889 88731186 -73868744 - L1ME3A LINE L1 -245 5925 5605 358 278 118 38 chrX 88731198 88731521 -73868409 - L1ME3A LINE L1 -747 5399 5189 350 331 12 0 chrX 88731538 88731656 -73868274 - L1MC4a LINE L1 -532 5589 5483 2221 106 3 0 chrX 88731673 88731974 -73867956 - AluSg SINE Alu -3 307 6 2396 73 0 13 chrX 88732363 88732678 -73867252 - AluY SINE Alu 0 311 1 25 0 0 0 chrX 88734485 88734510 -73865420 + AT_rich Low_complexity Low_complexity 1 25 0 3283 72 13 17 chrX 88735069 88735528 -73864402 - L1PA8 LINE L1 -13 6159 5703 261 139 0 0 chrX 88735651 88735694 -73864236 + (GAA)n Simple_repeat Simple_repeat 2 44 0 930 137 0 16 chrX 88735699 88735881 -73864049 + (GGA)n Simple_repeat Simple_repeat 2 180 0 261 98 0 0 chrX 88735899 88735940 -73863990 + (CAG)n Simple_repeat Simple_repeat 2 42 0 231 114 0 0 chrX 88735940 88735975 -73863955 + (GGA)n Simple_repeat Simple_repeat 3 37 0 417 20 0 0 chrX 88736306 88736356 -73863574 + (TA)n Simple_repeat Simple_repeat 1 50 0 979 88 7 0 chrX 88736856 88737004 -73862926 - L1PBa LINE L1 -6692 171 23 432 159 11 119 chrX 88737019 88737195 -73862735 - L1MCa LINE L1 -5226 1200 1044 3920 174 21 21 chrX 88737385 88738107 -73861823 - MER72 LTR ERV1 0 722 1 350 320 40 0 chrX 88738238 88738363 -73861567 - MIR SINE MIR -72 190 61 186 143 0 0 chrX 88739853 88739888 -73860042 + (TG)n Simple_repeat Simple_repeat 2 36 0 2129 102 29 9 chrX 88739926 88740269 -73859661 + L1MA1 LINE L1 5953 6302 0 804 203 6 0 chrX 88740377 88740554 -73859376 + L1MA4 LINE L1 6121 6298 -2 189 175 0 0 chrX 88741594 88741634 -73858296 + T-rich Low_complexity Low_complexity 1 40 0 225 222 28 0 chrX 88742321 88742393 -73857537 - L1MDa LINE L1 -2930 3610 3537 884 209 0 12 chrX 88742393 88742556 -73857374 - FRAM SINE Alu -19 157 1 484 232 149 8 chrX 88742559 88742800 -73857130 - L1MDa LINE L1 -3007 3533 3259 * 808 220 23 27 chrX 88742783 88743042 -73856888 - L1MDa LINE L1 -3617 2923 2666 716 205 8 0 chrX 88743087 88743214 -73856716 - FLAM_A SINE Alu -5 128 1 1547 248 71 101 chrX 88743262 88743466 -73856464 - L1MDa LINE L1 -3905 2635 2426 2294 93 3 3 chrX 88743466 88743776 -73856154 - AluY SINE Alu -1 310 1 1547 248 71 101 chrX 88743776 88744874 -73855056 - L1MDa LINE L1 -4114 2426 1372 3857 132 26 5 chrX 88744918 88745756 -73854174 - L1PA15 LINE L1 -2 6163 5254 233 213 40 0 chrX 88745763 88745838 -73854092 - L1MDa LINE L1 -5185 1355 1278 201 74 0 0 chrX 88745922 88745949 -73853981 + (T)n Simple_repeat Simple_repeat 1 27 0 5925 149 35 3 chrX 88745964 88746617 -73853313 - L1PB1 LINE L1 -3 6148 5517 199 70 23 23 chrX 88746617 88746660 -73853270 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2283 70 0 7 chrX 88746660 88746946 -73852984 - AluY SINE Alu -27 284 1 5925 149 35 3 chrX 88746946 88747123 -73852807 - L1PB1 LINE L1 -634 5517 5347 189 74 0 0 chrX 88747123 88747150 -73852780 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 5925 149 35 3 chrX 88747150 88747954 -73851976 - L1PB1 LINE L1 -804 5347 4472 254 297 39 47 chrX 88748511 88748639 -73851291 - L1MDa LINE L1 -5882 648 522 546 270 159 0 chrX 88748709 88748898 -73851032 - LTR50 LTR ERVL -291 504 286 2330 283 48 49 chrX 88748940 88749878 -73850052 - L2 LINE L2 -569 2745 1809 297 385 17 0 chrX 88750596 88750713 -73849217 - MIR3 SINE MIR -29 179 61 293 274 0 14 chrX 88750803 88750876 -73849054 + CT-rich Low_complexity Low_complexity 2 73 0 305 377 7 7 chrX 88751255 88751393 -73848537 + MIR SINE MIR 40 177 -85 21 36 0 0 chrX 88756139 88756167 -73843763 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrX 88756660 88756702 -73843228 + AT_rich Low_complexity Low_complexity 1 42 0 216 205 205 13 chrX 88757484 88757562 -73842368 + MIR SINE MIR 133 225 -37 341 75 19 0 chrX 88757909 88757962 -73841968 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 655 212 0 15 chrX 88758339 88758471 -73841459 - FRAM SINE Alu -15 161 32 893 110 0 8 chrX 88758510 88758637 -73841293 - THE1B LTR MaLR 0 364 239 3413 174 77 7 chrX 88758637 88759791 -73840139 + L1PA12 LINE L1 2393 3631 -3953 5925 109 14 2 chrX 88759791 88760779 -73839151 + L1PA14 LINE L1 5161 6161 0 1111 86 0 25 chrX 88760784 88760946 -73838984 + L1MA2 LINE L1 6143 6300 -4 1061 233 59 79 chrX 88762204 88762759 -73837171 + MER39 LTR ERV1 1 707 0 215 277 0 31 chrX 88763505 88763570 -73836360 + CT-rich Low_complexity Low_complexity 4 66 0 7993 192 10 60 chrX 88763959 88764204 -73835726 - L1PA16 LINE L1 -4 6162 5906 2113 119 51 17 chrX 88764204 88764556 -73835374 + THE1B LTR MaLR 1 364 0 11235 104 11 0 chrX 88764556 88766118 -73833812 + THE1B-int LTR MaLR 1 1580 0 1875 148 98 21 chrX 88766118 88766456 -73833474 + THE1B LTR MaLR 1 364 0 7993 192 10 60 chrX 88766456 88769206 -73830724 - L1PA16 LINE L1 -257 5909 3319 240 328 132 35 chrX 88769348 88769659 -73830271 + L3b LINE CR1 1129 1469 -114 2219 130 14 27 chrX 88770135 88770504 -73829426 + THE1B LTR MaLR 1 364 0 10763 116 12 0 chrX 88770504 88772065 -73827865 + THE1B-int LTR MaLR 1 1580 0 2123 149 5 35 chrX 88772065 88772440 -73827490 + THE1B LTR MaLR 1 364 0 265 383 13 7 chrX 88773291 88773440 -73826490 - MIR3 SINE MIR -21 187 38 397 294 204 27 chrX 88773512 88773733 -73826197 + MIR SINE MIR 2 261 -1 204 289 99 25 chrX 88775162 88775283 -73824647 - MER5B DNA MER1_type -48 130 1 327 130 0 0 chrX 88776241 88776295 -73823635 + (TA)n Simple_repeat Simple_repeat 2 55 0 2258 95 0 3 chrX 88776296 88776592 -73823338 - AluSc SINE Alu -13 296 2 26 0 0 0 chrX 88776595 88776621 -73823309 + AT_rich Low_complexity Low_complexity 1 26 0 325 203 26 7 chrX 88777961 88778114 -73821816 + (TA)n Simple_repeat Simple_repeat 1 156 0 238 306 41 20 chrX 88778131 88778229 -73821701 + L2 LINE L2 3170 3269 -3 806 181 13 13 chrX 88779215 88779370 -73820560 - FRAM SINE Alu -16 160 6 21 0 0 0 chrX 88780320 88780341 -73819589 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chrX 88780827 88780867 -73819063 + AT_rich Low_complexity Low_complexity 1 40 0 28 71 0 0 chrX 88781393 88781449 -73818481 + AT_rich Low_complexity Low_complexity 1 56 0 4870 160 9 9 chrX 88782024 88782916 -73817014 - L1MA3 LINE L1 0 7724 6833 2128 199 37 25 chrX 88782919 88783406 -73816524 + L1 LINE L1 3964 4456 -1690 4810 170 23 3 chrX 88784815 88785733 -73814197 + L1 LINE L1 4441 5376 -770 397 297 42 36 chrX 88787297 88787462 -73812468 + MIR3 SINE MIR 43 208 0 2604 121 3 0 chrX 88788041 88788413 -73811517 + THE1C LTR MaLR 3 375 0 647 197 84 14 chrX 88788818 88788960 -73810970 + FRAM SINE Alu 10 161 -15 23 33 0 0 chrX 88789805 88789835 -73810095 + AT_rich Low_complexity Low_complexity 1 30 0 14678 182 25 38 chrX 88793197 88794904 -73805026 - L1MA3 LINE L1 -996 6569 4841 5869 111 16 34 chrX 88794904 88796897 -73803033 - L1PA13 LINE L1 0 6814 4836 14678 182 25 38 chrX 88796897 88798680 -73801250 - L1MA3 LINE L1 -2724 4841 3036 2798 10 0 0 chrX 88798680 88798990 -73800940 + AluYa5 SINE Alu 1 310 -1 14678 182 25 38 chrX 88798990 88799763 -73800167 - L1MA3 LINE L1 -4529 3036 2254 2368 125 17 8 chrX 88799763 88800124 -73799806 + THE1B LTR MaLR 1 364 0 14678 182 25 38 chrX 88800124 88801576 -73798354 - L1MA3 LINE L1 -5311 2254 931 12458 211 28 8 chrX 88801575 88801696 -73798234 - L1PA13 LINE L1 -2793 4004 3887 * 1618 162 49 85 chrX 88801696 88802085 -73797845 + THE1C LTR MaLR 1 375 0 12458 211 28 8 chrX 88802085 88805081 -73794849 - L1PA13 LINE L1 -2910 3887 772 295 41 41 0 chrX 88805081 88805130 -73794800 + (CA)n Simple_repeat Simple_repeat 1 51 0 12458 211 28 8 chrX 88805130 88805918 -73794012 - L1PA13 LINE L1 -6025 772 1 202 299 30 0 chrX 88805927 88805994 -73793936 + MIR SINE MIR 98 166 -96 23 54 0 0 chrX 88807520 88807557 -73792373 + AT_rich Low_complexity Low_complexity 1 37 0 1250 74 0 0 chrX 88807717 88807880 -73792050 + L1PB1 LINE L1 5615 5777 -374 224 57 0 29 chrX 88807883 88808098 -73791832 + (TG)n Simple_repeat Simple_repeat 1 34 0 1106 113 0 5 chrX 88807909 88808121 -73791809 + (TA)n Simple_repeat Simple_repeat 1 210 0 1232 141 0 0 chrX 88808121 88808312 -73791618 - L1P5 LINE L1 -524 5627 5437 2503 83 0 0 chrX 88808317 88808644 -73791286 + L1PB1 LINE L1 5782 6108 -43 1532 138 0 0 chrX 88810845 88811069 -73788861 - AluSg/x SINE Alu -8 304 81 827 164 29 0 chrX 88811755 88811895 -73788035 - FRAM SINE Alu -31 145 2 519 281 0 0 chrX 88812096 88812217 -73787713 + L2 LINE L2 3189 3309 -4 25 0 0 0 chrX 88812359 88812384 -73787546 + AT_rich Low_complexity Low_complexity 1 25 0 303 169 0 0 chrX 88813548 88813619 -73786311 + (TA)n Simple_repeat Simple_repeat 1 71 0 215 211 35 0 chrX 88813721 88813778 -73786152 + (TAA)n Simple_repeat Simple_repeat 3 61 0 681 122 14 14 chrX 88814498 88814637 -73785293 + GA-rich Low_complexity Low_complexity 3 141 0 2158 200 15 19 chrX 88815252 88815605 -73784325 - L1MA9 LINE L1 -38 6274 5922 256 312 38 19 chrX 88815605 88815762 -73784168 - L1ME3A LINE L1 -244 5926 5767 711 119 59 0 chrX 88817072 88817190 -73782740 + L1MB1 LINE L1 6042 6166 -2 2200 107 3 3 chrX 88817443 88817743 -73782187 - AluSx SINE Alu -12 300 1 254 321 22 35 chrX 88818746 88818859 -73781071 - MIR SINE MIR -74 134 20 283 278 83 56 chrX 88819315 88819414 -73780516 - L1MA10 LINE L1 -4 6330 6224 2329 118 8 8 chrX 88819414 88819769 -73780161 - THE1A LTR MaLR 0 355 1 283 278 83 56 chrX 88819769 88819813 -73780117 - L1MA10 LINE L1 -110 6224 6183 779 210 54 34 chrX 88820782 88821167 -73778763 - MER31B LTR ERV1 0 466 3 381 273 111 29 chrX 88821167 88821339 -73778591 + L2 LINE L2 3120 3305 -8 31 26 0 0 chrX 88822697 88822735 -73777195 + AT_rich Low_complexity Low_complexity 1 38 0 1458 182 0 97 chrX 88823314 88823686 -73776244 + AluJb SINE Alu 1 340 0 13720 157 31 6 chrX 88824367 88826687 -73773243 + L1PA11 LINE L1 2820 5230 -944 243 0 0 0 chrX 88826687 88826714 -73773216 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 13720 157 31 6 chrX 88826714 88827679 -73772251 + L1PA11 LINE L1 5230 6169 -5 8471 187 30 68 chrX 88827916 88831245 -73768685 - L1PA15 LINE L1 -13 6152 2928 2043 113 7 10 chrX 88831618 88831909 -73768021 - AluSx SINE Alu -20 292 3 402 182 0 0 chrX 88831913 88831990 -73767940 + Tigger7 DNA MER2_type 2454 2530 -57 2075 130 3 3 chrX 88832010 88832317 -73767613 - AluSg SINE Alu -3 307 1 23 78 0 0 chrX 88832422 88832473 -73767457 + AT_rich Low_complexity Low_complexity 1 51 0 27 49 0 0 chrX 88832519 88832560 -73767370 + AT_rich Low_complexity Low_complexity 1 41 0 23 54 0 0 chrX 88832589 88832626 -73767304 + AT_rich Low_complexity Low_complexity 1 37 0 800 284 66 8 chrX 88836571 88836814 -73763116 + MIR SINE MIR 2 258 -4 2577 187 111 15 chrX 88837535 88838128 -73761802 - L1MB8 LINE L1 -1 6177 5528 2153 90 0 3 chrX 88838254 88838543 -73761387 + AluSx SINE Alu 11 298 -14 2527 64 0 0 chrX 88838562 88838873 -73761057 + AluY SINE Alu 1 311 0 2252 68 0 4 chrX 88842545 88842825 -73757105 - AluY SINE Alu -4 307 29 352 281 150 31 chrX 88842833 88842993 -73756937 + MIR SINE MIR 53 231 -31 240 301 41 0 chrX 88842988 88843061 -73756869 - MIR SINE MIR -127 135 60 * 13365 136 22 60 chrX 88843942 88846456 -73753474 - Tigger1 DNA MER2_type -1 2417 1 239 305 75 70 chrX 88846467 88846680 -73753250 - MIR SINE MIR -15 247 34 196 342 75 25 chrX 88847482 88847643 -73752287 - L3b LINE CR1 -104 1479 1311 2328 95 0 0 chrX 88849145 88849449 -73750481 + AluSq SINE Alu 1 304 -9 6600 121 21 1 chrX 88850152 88851217 -73748713 + L1MA1 LINE L1 5216 6301 -1 21 36 0 0 chrX 88851217 88851245 -73748685 + AT_rich Low_complexity Low_complexity 1 28 0 2251 92 3 7 chrX 88852080 88852386 -73747544 - AluSp SINE Alu -4 309 5 1999 153 22 27 chrX 88856518 88856884 -73743046 - THE1B LTR MaLR 0 364 1 422 339 49 27 chrX 88857146 88857370 -73742560 - L2 LINE L2 -231 3082 2854 185 304 0 0 chrX 88857453 88857509 -73742421 - L2 LINE L2 -152 3161 3106 8745 70 2 28 chrX 88857509 88858749 -73741181 + L1P LINE L1 830 2036 -4110 4533 126 21 0 chrX 88858749 88859457 -73740473 + L1PA13 LINE L1 5422 6144 -19 2190 160 5 36 chrX 88859819 88860238 -73739692 - L1PA13 LINE L1 -4641 2146 1741 1122 160 0 24 chrX 88860237 88860450 -73739480 - L1M1 LINE L1 -632 7092 6885 * 1440 142 5 0 chrX 88860450 88860669 -73739261 - AluJb SINE Alu -8 304 85 1281 203 5 12 chrX 88860669 88861099 -73738831 - L1M1 LINE L1 -745 6820 6472 2240 172 17 27 chrX 88861100 88861577 -73738353 + L1 LINE L1 4430 4901 -1245 1076 181 5 9 chrX 88861576 88861791 -73738139 - L1M1 LINE L1 -1777 5788 5575 * 3920 189 35 5 chrX 88861803 88865437 -73734493 - L1M1 LINE L1 -3641 3924 11 1674 86 32 0 chrX 88865542 88865762 -73734168 + AluSg/x SINE Alu 71 297 -13 21 0 0 0 chrX 88865875 88865896 -73734034 + AT_rich Low_complexity Low_complexity 1 21 0 1140 93 25 0 chrX 88867425 88867587 -73732343 + AluSg/x SINE Alu 132 297 -15 2015 135 3 0 chrX 88869186 88869497 -73730433 - AluSx SINE Alu 0 312 1 347 355 32 8 chrX 88869937 88870061 -73729869 - MIR3 SINE MIR -30 178 52 234 208 0 0 chrX 88871290 88871343 -73728587 + CT-rich Low_complexity Low_complexity 2 54 0 914 176 0 0 chrX 88871515 88871685 -73728245 - AluSg/x SINE Alu 0 312 143 1682 177 13 3 chrX 88871967 88872267 -73727663 - AluJb SINE Alu -9 303 1 29 28 0 0 chrX 88872631 88872667 -73727263 + AT_rich Low_complexity Low_complexity 1 36 0 219 175 25 0 chrX 88872980 88873020 -73726910 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 2439 159 20 0 chrX 88873611 88874052 -73725878 - L1MA5 LINE L1 -6 6294 5845 10402 173 30 8 chrX 88874238 88876791 -73723139 - L1MA2 LINE L1 0 7723 5079 360 0 0 0 chrX 88876791 88876831 -73723099 + (TG)n Simple_repeat Simple_repeat 2 41 0 10402 173 30 8 chrX 88876831 88877572 -73722358 - L1MA2 LINE L1 -2644 5079 4356 233 182 0 0 chrX 88877571 88877615 -73722315 - L1MA2 LINE L1 -7508 57 14 * 34 24 0 0 chrX 88878180 88878221 -73721709 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrX 88878403 88878435 -73721495 + AT_rich Low_complexity Low_complexity 1 32 0 347 324 9 9 chrX 88878923 88879031 -73720899 - MIR3 SINE MIR -16 192 85 2190 159 22 3 chrX 88879625 88879990 -73719940 - THE1C LTR MaLR 0 375 4 8855 143 34 46 chrX 88879993 88881592 -73718338 - THE1C-int LTR MaLR 0 1580 1 2196 160 19 3 chrX 88881592 88881961 -73717969 - THE1C LTR MaLR 0 375 1 23 0 0 0 chrX 88882796 88882819 -73717111 + AT_rich Low_complexity Low_complexity 1 23 0 12484 200 85 6 chrX 88883151 88883237 -73716693 + L1MA2 LINE L1 11 89 -7476 270 0 0 0 chrX 88883237 88883267 -73716663 + (CA)n Simple_repeat Simple_repeat 2 31 0 12484 200 85 6 chrX 88883267 88885739 -73714191 + L1MA2 LINE L1 89 2772 -4793 2520 181 5 0 chrX 88885739 88886147 -73713783 - MSTA LTR MaLR 0 428 19 785 157 0 8 chrX 88886156 88886290 -73713640 - MSTA-int LTR MaLR 0 1651 1519 * 3264 166 2 2 chrX 88886287 88886843 -73713087 - MSTA-int LTR MaLR -1088 563 8 306 0 0 0 chrX 88886844 88886878 -73713052 + (T)n Simple_repeat Simple_repeat 1 34 0 2217 188 5 5 chrX 88886880 88887278 -73712652 - MSTA LTR MaLR -30 398 1 2443 130 22 0 chrX 88887278 88887686 -73712244 + L1MA2 LINE L1 2768 3184 -4381 6256 166 8 11 chrX 88887688 88889739 -73710191 + L1MA2 LINE L1 5677 7723 0 22 35 0 0 chrX 88890048 88890077 -73709853 + AT_rich Low_complexity Low_complexity 1 29 0 5056 135 5 7 chrX 88890749 88891563 -73708367 - L1P LINE L1 -1322 4824 4013 1923 84 4 0 chrX 88891563 88891821 -73708109 + L1PA11 LINE L1 5912 6173 -1 2272 71 3 7 chrX 88891936 88892233 -73707697 + AluY SINE Alu 1 296 -15 21 0 0 0 chrX 88892884 88892905 -73707025 + AT_rich Low_complexity Low_complexity 1 21 0 423 257 48 91 chrX 88892935 88893122 -73706808 + MIR SINE MIR 13 191 -71 397 156 78 0 chrX 88893384 88893474 -73706456 - L1ME4a LINE L1 -237 5884 5788 2404 82 0 0 chrX 88893532 88893835 -73706095 + AluSg SINE Alu 1 303 -7 43 76 0 0 chrX 88895136 88895228 -73704702 + AT_rich Low_complexity Low_complexity 1 92 0 2030 130 0 0 chrX 88896398 88896703 -73703227 + AluSx SINE Alu 1 305 0 303 280 152 0 chrX 88896929 88897061 -73702869 + MIR3 SINE MIR 34 185 -23 50 75 0 0 chrX 88899145 88899251 -73700679 + AT_rich Low_complexity Low_complexity 1 106 0 254 83 0 0 chrX 88899694 88899742 -73700188 + LTR66 LTR ERVL 391 438 -172 225 0 0 0 chrX 88899742 88899767 -73700163 + (CA)n Simple_repeat Simple_repeat 1 25 0 251 128 0 0 chrX 88899771 88899818 -73700112 - LTR66 LTR ERVL -170 440 394 3431 184 20 27 chrX 88899849 88900827 -73699103 - L1 LINE L1 -3663 3902 2934 12600 218 26 39 chrX 88900837 88901945 -73697985 - L1PA12 LINE L1 -2491 5093 3973 1720 67 0 0 chrX 88901945 88902169 -73697761 + L1PA7 LINE L1 5931 6154 0 12600 218 26 39 chrX 88902169 88904874 -73695056 - L1M4 LINE L1 -3611 3973 1 2396 268 43 29 chrX 88904874 88905078 -73694852 + L1M4 LINE L1 3971 4171 -3413 2171 133 33 25 chrX 88905078 88905439 -73694491 + THE1B LTR MaLR 1 364 0 10801 115 12 12 chrX 88905439 88906900 -73693030 + THE1B-int LTR MaLR 1 1464 -116 2229 101 0 3 chrX 88906900 88907197 -73692733 - AluSx SINE Alu -16 296 1 10801 115 12 12 chrX 88907197 88907315 -73692615 + THE1B-int LTR MaLR 1463 1580 0 1917 147 42 33 chrX 88907316 88907676 -73692254 + THE1B LTR MaLR 2 364 0 2396 268 43 29 chrX 88907676 88908572 -73691358 + L1M4 LINE L1 4170 5090 -2494 1511 122 9 0 chrX 88908577 88908798 -73691132 - AluSp SINE Alu 0 313 91 1666 168 90 6 chrX 88908799 88909120 -73690810 - MSTA LTR MaLR -80 348 1 2489 59 3 0 chrX 88909160 88909466 -73690464 - AluY SINE Alu -4 307 1 180 0 0 0 chrX 88910774 88910794 -73689136 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chrX 88912021 88912051 -73687879 + AT_rich Low_complexity Low_complexity 1 30 0 253 148 0 33 chrX 88912178 88912239 -73687691 + L1MC4 LINE L1 6640 6698 -1344 * 6333 135 27 38 chrX 88912238 88913456 -73686474 + L1MA2 LINE L1 2263 3467 -4098 2927 181 78 26 chrX 88913456 88914147 -73685783 + LTR8A LTR ERV1 1 727 0 553 269 99 16 chrX 88914147 88914329 -73685601 + HUERS-P1 LTR ERV1 1 197 -6066 4147 181 97 60 chrX 88914480 88915622 -73684308 + HUERS-P1 LTR ERV1 3 1624 -4639 * 11264 150 39 33 chrX 88915619 88916246 -73683684 + HUERS-P1 LTR ERV1 768 1390 -4934 2108 113 0 0 chrX 88916246 88916547 -73683383 + AluY SINE Alu 1 301 -10 11264 150 39 33 chrX 88916547 88919584 -73680346 + HUERS-P1 LTR ERV1 1390 5790 -534 1078 176 63 82 chrX 88919606 88919925 -73680005 + HUERS-P1 LTR ERV1 5914 6226 -105 843 247 111 16 chrX 88919930 88920173 -73679757 + HUERS-P1 LTR ERV1 5994 6259 -4 268 143 0 0 chrX 88920175 88920224 -73679706 + LTR8A LTR ERV1 1 49 -678 8678 178 23 17 chrX 88920226 88923101 -73676829 + L1MA2 LINE L1 4778 7682 -41 2288 128 34 3 chrX 88923101 88923454 -73676476 + THE1B LTR MaLR 1 364 0 9750 120 32 31 chrX 88923454 88925033 -73674897 + THE1B-int LTR MaLR 1 1580 0 1090 134 0 0 chrX 88925033 88925190 -73674740 + THE1B LTR MaLR 1 157 -207 1153 186 16 36 chrX 88925209 88925457 -73674473 + L1M3 LINE L1 5503 5745 -435 * 5251 259 81 43 chrX 88925456 88927678 -73672252 + L1MB7 LINE L1 115 2420 -4539 234 285 24 8 chrX 88927739 88927862 -73672068 + (CATATA)n Simple_repeat Simple_repeat 6 130 0 25 0 0 0 chrX 88927981 88928006 -73671924 + AT_rich Low_complexity Low_complexity 1 25 0 233 195 0 0 chrX 88928221 88928262 -73671668 + (CA)n Simple_repeat Simple_repeat 2 42 0 2241 250 72 4 chrX 88928385 88929154 -73670776 + L1MB7 LINE L1 2921 3741 -3216 * 3228 248 102 25 chrX 88929148 88929746 -73670184 + L1MB7 LINE L1 4844 5395 -1600 2380 81 3 3 chrX 88929746 88930054 -73669876 + AluSp SINE Alu 1 308 -5 3228 248 102 25 chrX 88930054 88931433 -73668497 + L1MB7 LINE L1 5395 6986 -9 2515 278 35 19 chrX 88932557 88933402 -73666528 - L1ME1 LINE L1 -19 6147 5289 12027 204 80 16 chrX 88933413 88937342 -73662588 - L1PA16 LINE L1 -3 6866 2354 351 0 0 0 chrX 88937342 88937381 -73662549 + (TG)n Simple_repeat Simple_repeat 2 40 0 12027 204 80 16 chrX 88937381 88939897 -73660033 - L1PA16 LINE L1 -4515 2354 2 2369 258 27 25 chrX 88939927 88940776 -73659154 - L1ME1 LINE L1 -886 5260 4410 671 276 70 8 chrX 88940777 88941020 -73658910 - L1ME1 LINE L1 -1932 4214 3957 862 273 58 6 chrX 88941027 88941372 -73658558 - L1ME1 LINE L1 -3489 2657 2295 24 0 0 0 chrX 88942022 88942046 -73657884 + AT_rich Low_complexity Low_complexity 1 24 0 288 77 0 0 chrX 88944926 88944965 -73654965 + (CA)n Simple_repeat Simple_repeat 2 40 0 203 151 27 68 chrX 88946279 88946352 -73653578 + T-rich Low_complexity Low_complexity 2 71 0 22 0 0 0 chrX 88946990 88947012 -73652918 + AT_rich Low_complexity Low_complexity 1 22 0 2280 169 32 28 chrX 88948401 88948868 -73651062 - L1MC3 LINE L1 -21 7764 7296 1808 161 0 35 chrX 88949585 88949722 -73650208 + AluJo SINE Alu 1 141 -171 2222 88 0 7 chrX 88949722 88950018 -73649912 + AluY SINE Alu 1 294 -17 1808 161 0 35 chrX 88950018 88950196 -73649734 + AluJo SINE Alu 141 305 -7 31 0 0 0 chrX 88950364 88950395 -73649535 + AT_rich Low_complexity Low_complexity 1 31 0 2022 92 33 0 chrX 88950399 88950725 -73649205 + AluSc SINE Alu 1 335 0 1867 193 25 3 chrX 88951307 88951665 -73648265 + MLT2D LTR ERVL 1 366 -48 540 172 15 26 chrX 88951665 88951942 -73647988 + CT-rich Low_complexity Low_complexity 1 274 0 240 350 56 14 chrX 88952107 88952250 -73647680 + MIR SINE MIR 2 150 -112 1558 249 22 3 chrX 88952515 88952873 -73647057 - MLT1A1 LTR MaLR 0 365 1 7171 239 37 11 chrX 88952874 88954565 -73645365 - MLT1A1-int LTR MaLR -1 1734 1 1649 206 49 9 chrX 88954572 88954916 -73645014 - MLT1A1 LTR MaLR -7 358 1 513 263 28 65 chrX 88955148 88955365 -73644565 - L2 LINE L2 -1 3312 3104 302 289 35 9 chrX 88955393 88955507 -73644423 - MLT1L LTR MaLR 0 615 499 472 284 156 9 chrX 88955592 88955803 -73644127 - MLT1L LTR MaLR -228 387 146 1939 292 117 14 chrX 88956028 88956843 -73643087 + L2 LINE L2 1215 2113 -1201 3974 212 18 16 chrX 88956872 88957202 -73642728 - L1MB7 LINE L1 -21 6163 5835 9120 101 17 0 chrX 88957202 88958468 -73641462 - HSMAR1 DNA Mariner 0 1287 1 3974 212 18 16 chrX 88958468 88958627 -73641303 - L1MB7 LINE L1 -349 5835 5678 1407 210 49 0 chrX 88958627 88958746 -73641184 + AluJb SINE Alu 1 113 -199 198 0 0 0 chrX 88958746 88958768 -73641162 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1407 210 49 0 chrX 88958768 88958957 -73640973 + AluJb SINE Alu 113 312 0 3974 212 18 16 chrX 88958957 88959519 -73640411 - L1MB7 LINE L1 -506 5678 5107 1295 241 58 47 chrX 88959521 88959968 -73639962 - L1MB7 LINE L1 -1447 4699 4244 306 0 0 0 chrX 88959968 88960002 -73639928 + (TG)n Simple_repeat Simple_repeat 2 35 0 1295 241 58 47 chrX 88960002 88960084 -73639846 - L1MB7 LINE L1 -1902 4244 4164 1698 182 17 57 chrX 88960100 88960506 -73639424 - MLT1B LTR MaLR 0 390 1 5252 229 19 48 chrX 88960506 88961365 -73638565 - L1M4c LINE L1 -1844 5113 4316 264 30 0 0 chrX 88961365 88961398 -73638532 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5252 229 19 48 chrX 88961398 88962090 -73637840 - L1M4c LINE L1 -2641 4316 3606 4631 144 39 3 chrX 88962106 88963211 -73636719 + L1PA12 LINE L1 4903 6040 -128 2103 123 71 6 chrX 88963211 88963551 -73636379 + THE1B LTR MaLR 1 362 -2 6150 119 7 4 chrX 88963553 88964452 -73635478 + THE1B-int LTR MaLR 1 901 -679 955 186 48 48 chrX 88964454 88964664 -73635266 + THE1B LTR MaLR 153 362 -2 831 63 18 0 chrX 88964666 88964777 -73635153 + L1PA13 LINE L1 6036 6148 -15 2299 38 0 4 chrX 88964779 88965045 -73634885 - AluY SINE Alu -9 302 38 23 68 0 0 chrX 88965077 88965121 -73634809 + AT_rich Low_complexity Low_complexity 1 44 0 4813 261 40 24 chrX 88965131 88969398 -73630532 - L1PBa LINE L1 -3387 3475 27 438 278 73 39 chrX 88969438 88969877 -73630053 - L1M4c LINE L1 -4099 3039 2586 910 272 53 57 chrX 88970027 88970289 -73629641 - L1M4c LINE L1 -4452 2686 2425 2232 98 0 23 chrX 88970289 88970595 -73629335 - AluSp SINE Alu -14 299 1 910 272 53 57 chrX 88970595 88970962 -73628968 - L1M4c LINE L1 -4713 2425 1907 * 3538 289 24 14 chrX 88970960 88971978 -73627952 - L1M4c LINE L1 -5782 1077 50 4301 171 37 29 chrX 88972263 88972544 -73627386 + L1MA5 LINE L1 4728 5005 -1295 778 247 0 25 chrX 88972544 88972706 -73627224 + FAM SINE Alu 1 158 -17 4301 171 37 29 chrX 88972706 88973820 -73626110 + L1MA5 LINE L1 5005 6119 -181 1049 195 106 50 chrX 88973822 88974241 -73625689 + LTR22 LTR ERVK 1 509 0 2038 131 0 0 chrX 88974241 88974556 -73625374 - AluY SINE Alu 0 315 1 1019 133 39 0 chrX 88974556 88974736 -73625194 + L1MA5 LINE L1 6108 6294 -6 4654 198 33 25 chrX 88974981 88976258 -73623672 - L1MA10 LINE L1 -14 6320 5038 235 303 104 36 chrX 88976405 88976818 -73623112 + L1 LINE L1 3718 4158 -1988 400 313 91 26 chrX 88976961 88977191 -73622739 + L1 LINE L1 4311 4555 -1591 6251 68 2 0 chrX 88977284 88978084 -73621846 - L1PA8 LINE L1 -5 6167 5366 1761 102 0 4 chrX 88978081 88978346 -73621584 + L1PA8 LINE L1 5076 5339 -807 * 992 268 118 39 chrX 88978536 88979003 -73620927 - MLT1J LTR MaLR -7 504 1 205 194 0 0 chrX 88979043 88979079 -73620851 - MER5A DNA MER1_type 0 189 154 1639 229 66 8 chrX 88979082 88979445 -73620485 + MLT1E LTR MaLR 206 589 -4 225 296 0 0 chrX 88979720 88979731 -73620199 + MER3 DNA MER1_type 37 47 -162 425 267 5 121 chrX 88979731 88979937 -73619993 - MER3 DNA MER1_type 0 209 28 971 262 118 58 chrX 88980257 88980722 -73619208 + HsTC2a DNA Tc2 3 495 -249 849 206 0 0 chrX 88980731 88980872 -73619058 - FRAM SINE Alu -23 153 13 627 204 93 14 chrX 88980880 88981096 -73618834 + HsTC2a DNA Tc2 499 731 -11 280 247 0 22 chrX 88981108 88981197 -73618733 + (TAA)n Simple_repeat Simple_repeat 3 89 0 21 0 0 0 chrX 88981772 88981793 -73618137 + AT_rich Low_complexity Low_complexity 1 21 0 578 307 79 41 chrX 88981813 88982207 -73617723 + MLT1H1 LTR MaLR 1 409 -146 2528 164 14 23 chrX 88982322 88982842 -73617088 + L1MA4 LINE L1 5786 6300 0 494 277 84 19 chrX 88983044 88983217 -73616713 + L1MC4 LINE L1 7446 7637 -405 1753 196 28 6 chrX 88983217 88983574 -73616356 - MLT1A1 LTR MaLR 0 365 1 494 277 84 19 chrX 88983574 88983613 -73616317 + L1MC4 LINE L1 7637 7672 -370 676 211 66 13 chrX 88983628 88983780 -73616150 + MER31B LTR ERV1 1 160 -306 3685 176 73 73 chrX 88983824 88984738 -73615192 + MER21A LTR ERV1 1 914 -17 629 232 58 48 chrX 88984770 88984977 -73614953 + MER31B LTR ERV1 254 462 -4 25 0 0 0 chrX 88985123 88985148 -73614782 + AT_rich Low_complexity Low_complexity 1 25 0 261 98 0 0 chrX 88985192 88985233 -73614697 + (TG)n Simple_repeat Simple_repeat 2 42 0 840 259 29 86 chrX 88985471 88985845 -73614085 - HsTC2c DNA Tc2 -3 726 374 385 234 0 27 chrX 88985987 88986081 -73613849 + L1 LINE L1 5203 5298 -848 189 0 0 0 chrX 88986081 88986102 -73613828 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4089 146 18 84 chrX 88986105 88987010 -73612920 + L1PA6 LINE L1 5309 6153 -1 385 234 0 27 chrX 88987010 88987022 -73612908 + L1 LINE L1 5300 5310 -836 421 280 95 74 chrX 88987192 88987435 -73612495 - MLT1G1 LTR MaLR -185 410 163 346 296 76 41 chrX 88987651 88988114 -73611816 + L1 LINE L1 4759 5237 -909 321 325 17 0 chrX 88988380 88988500 -73611430 + CT-rich Low_complexity Low_complexity 1 122 0 4473 270 35 22 chrX 88988615 88989601 -73610329 + L1PBa LINE L1 7 1065 -5798 333 47 0 0 chrX 88989601 88989644 -73610286 + (CA)n Simple_repeat Simple_repeat 2 44 0 4473 270 35 22 chrX 88989644 88990216 -73609714 + L1PBa LINE L1 1065 1628 -5235 * 4645 192 64 10 chrX 88990192 88991131 -73608799 + L1PA15 LINE L1 660 1649 -5214 33 25 0 0 chrX 88991132 88991172 -73608758 + AT_rich Low_complexity Low_complexity 1 40 0 7137 215 25 81 chrX 88991172 88992788 -73607142 + L1PA15 LINE L1 1952 3657 -3205 839 191 34 0 chrX 88992788 88992935 -73606995 + AluSp SINE Alu 132 283 -30 180 0 0 0 chrX 88992938 88992958 -73606972 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7137 215 25 81 chrX 88992958 88994311 -73605619 + L1PA15 LINE L1 3659 4982 -1880 2892 280 58 10 chrX 88994299 88995655 -73604275 + L1M4 LINE L1 2367 3788 -2358 * 5252 186 7 10 chrX 88995748 88997203 -73602727 + L1PA15 LINE L1 5068 6519 -362 570 100 0 0 chrX 88997203 88997283 -73602647 - MADE1 DNA Mariner 0 80 1 5252 186 7 10 chrX 88997283 88997623 -73602307 + L1PA15 LINE L1 6519 6858 -23 243 0 0 0 chrX 88997630 88997657 -73602273 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 530 254 81 11 chrX 88997659 88997962 -73601968 + MSTD LTR MaLR 32 396 0 1488 221 64 8 chrX 88998031 88998389 -73601541 + MSTB1 LTR MaLR 3 380 -52 1859 276 36 3 chrX 88998397 88998705 -73601225 - L1 LINE L1 -3380 2766 2470 357 24 0 0 chrX 88998705 88998747 -73601183 + (TA)n Simple_repeat Simple_repeat 2 43 0 1859 276 36 3 chrX 88998747 88999014 -73600916 - L1 LINE L1 -3676 2470 2172 6248 146 17 5 chrX 88999024 89000264 -73599666 - L1MA1 LINE L1 -7 7714 6461 7107 200 27 19 chrX 89000811 89000890 -73599040 - L1MA1 LINE L1 -1097 6468 6391 1662 145 48 58 chrX 89000890 89001269 -73598661 - THE1C LTR MaLR 0 375 1 7107 200 27 19 chrX 89001269 89002851 -73597079 - L1MA1 LINE L1 -1174 6391 4793 * 18272 193 24 20 chrX 89002849 89005429 -73594501 - L1MA1 LINE L1 -3198 4367 1762 201 39 0 0 chrX 89005429 89005455 -73594475 + (TC)n Simple_repeat Simple_repeat 1 26 0 18272 193 24 20 chrX 89005455 89007145 -73592785 - L1MA1 LINE L1 -5803 1762 80 406 174 30 46 chrX 89007161 89007279 -73592651 + MSTB1 LTR MaLR 249 432 0 187 255 78 98 chrX 89008814 89008916 -73591014 + MIR SINE MIR 137 236 -26 297 275 12 12 chrX 89009598 89009678 -73590252 + HAL1 LINE L1 757 836 -1671 322 271 42 10 chrX 89009752 89009848 -73590082 + L1MEc LINE L1 380 478 -5918 1387 286 36 32 chrX 89009876 89010377 -73589553 + L1MEc LINE L1 46 595 -5801 2380 85 0 7 chrX 89010377 89010682 -73589248 - AluSq SINE Alu -8 305 3 1387 286 36 32 chrX 89010682 89010861 -73589069 + L1MEc LINE L1 595 772 -5624 350 240 160 56 chrX 89010880 89011168 -73588762 + L1MEc LINE L1 980 1297 -5099 1274 251 89 32 chrX 89011195 89011671 -73588259 - LTR40b LTR ERVL 0 462 3 607 221 7 20 chrX 89011671 89011819 -73588111 - MER3 DNA MER1_type -51 158 13 350 325 40 8 chrX 89011862 89011988 -73587942 - MIR SINE MIR -76 186 57 809 271 138 83 chrX 89012026 89012126 -73587804 + MLT1G1 LTR MaLR 1 94 -501 1674 91 27 5 chrX 89012126 89012346 -73587584 + AluSg SINE Alu 1 225 -85 809 271 138 83 chrX 89012346 89012809 -73587121 + MLT1G1 LTR MaLR 94 595 0 2287 171 56 9 chrX 89014046 89014474 -73585456 + MER83 LTR ERV1 1 448 0 1241 188 27 12 chrX 89014474 89014730 -73585200 + MER83-int LTR ERV1 12 271 -4014 509 105 0 0 chrX 89014730 89014806 -73585124 + MSTA LTR MaLR 353 428 0 3893 116 64 11 chrX 89014806 89015451 -73584479 + MSTA-int LTR MaLR 1 679 -901 846 103 76 19 chrX 89015455 89015637 -73584293 + THE1C LTR MaLR 221 375 0 737 313 54 33 chrX 89015975 89016501 -73583429 - HUERS-P3 LTR ERV1 -2070 6556 4611 428 325 10 20 chrX 89016998 89017251 -73582679 - HUERS-P3 LTR ERV1 -2976 4146 3971 252 341 0 7 chrX 89017494 89017629 -73582301 - HUERS-P3 LTR ERV1 -4280 4639 4506 4793 127 7 0 chrX 89017679 89018797 -73581133 - THE1C-int LTR MaLR -413 1167 3 1695 144 92 18 chrX 89018799 89019126 -73580804 - THE1C LTR MaLR 0 375 25 313 109 0 0 chrX 89019126 89019172 -73580758 - THE1C LTR MaLR -324 51 6 2008 184 26 3 chrX 89019963 89020354 -73579576 + HERVR LTR ERV1 1927 2326 -1959 391 315 0 0 chrX 89021607 89021753 -73578177 + HERVR LTR ERV1 6956 7101 -291 216 0 0 0 chrX 89021766 89021790 -73578140 + (A)n Simple_repeat Simple_repeat 1 24 0 2110 146 39 5 chrX 89021958 89022391 -73577539 - L1M1 LINE L1 -5073 2492 2045 4779 105 58 69 chrX 89022391 89023826 -73576104 - pTR5 LTR ERV1 0 2606 1524 10343 194 19 9 chrX 89023826 89025839 -73574091 - L1M1 LINE L1 -5516 2049 17 198 91 0 0 chrX 89026905 89026938 -73572992 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 228 238 0 0 chrX 89026955 89027018 -73572912 + MLT2B1 LTR ERVL 458 520 0 618 375 98 18 chrX 89027833 89028270 -73571660 - L2 LINE L2 -653 2661 2190 594 256 26 67 chrX 89028615 89028741 -73571189 + MIR SINE MIR 4 116 -146 1779 157 4 0 chrX 89028741 89029064 -73570866 - AluJb SINE Alu 0 324 1 594 256 26 67 chrX 89029064 89029206 -73570724 + MIR SINE MIR 116 262 0 501 364 68 14 chrX 89029722 89030151 -73569779 - L2 LINE L2 -1195 2119 1668 2260 106 0 6 chrX 89030203 89030514 -73569416 + AluSg SINE Alu 1 309 -1 258 387 9 0 chrX 89031843 89031949 -73567981 - MIR SINE MIR -105 157 51 499 278 8 0 chrX 89032381 89032514 -73567416 + MLT1E3 LTR MaLR 64 197 -427 429 243 0 0 chrX 89032542 89032649 -73567281 - L1MA9 LINE L1 -34 6278 6172 892 206 30 0 chrX 89032653 89032852 -73567078 - L1MA9 LINE L1 -241 6071 5867 1272 237 68 24 chrX 89032887 89033267 -73566663 + MLT1E3 LTR MaLR 223 619 -5 1106 225 35 25 chrX 89033549 89033865 -73566065 - PABL_B LTR ERV1 0 667 349 865 227 22 85 chrX 89034757 89035206 -73564724 + L1MB4 LINE L1 609 1029 -5251 451 261 0 67 chrX 89035206 89035250 -73564680 + MER21B LTR ERV1 328 373 -490 2358 116 78 10 chrX 89035250 89035647 -73564283 - MSTA LTR MaLR 0 428 5 451 261 0 67 chrX 89035647 89035721 -73564209 + MER21B LTR ERV1 373 438 -425 2002 193 5 12 chrX 89035858 89036263 -73563667 + MER21B LTR ERV1 455 856 -7 1214 167 9 0 chrX 89036288 89036503 -73563427 + MER21B-int LTR ERV1 7 223 -3968 2894 147 36 9 chrX 89036503 89037100 -73562830 + MER4B LTR ERV1 1 779 0 1994 166 8 26 chrX 89037100 89037486 -73562444 + MER21B-int LTR ERV1 220 598 -3593 3499 153 9 74 chrX 89037486 89038225 -73561705 - LTR8 LTR ERV1 0 691 1 1274 203 13 0 chrX 89038225 89038462 -73561468 + MER21B-int LTR ERV1 1561 1800 -2391 3342 206 22 44 chrX 89038491 89038797 -73561133 + MER21B-int LTR ERV1 1644 1955 -2236 2110 147 47 28 chrX 89038797 89039225 -73560705 + LTR23 LTR ERV1 2 437 0 3342 206 22 44 chrX 89039225 89039734 -73560196 + MER21B-int LTR ERV1 1955 2441 -1750 18279 83 10 12 chrX 89039740 89045468 -73554462 + L1PA6 LINE L1 378 6153 -1 8480 168 42 23 chrX 89045567 89047243 -73552687 + MER21B-int LTR ERV1 2431 4139 -52 2218 227 58 0 chrX 89047325 89047792 -73552138 + MER21B LTR ERV1 1 494 -369 4419 261 101 8 chrX 89047797 89051163 -73548767 + L1MB4 LINE L1 1030 4721 -1661 3314 106 2 0 chrX 89051169 89051621 -73548309 + MLT2A2 LTR ERVL 1 453 0 39407 97 9 2 chrX 89051622 89057233 -73542697 + HERVL-A2-A2 LTR ERVL 2 5654 0 3362 100 4 0 chrX 89057233 89057684 -73542246 + MLT2A2 LTR ERVL 1 453 0 231 213 0 16 chrX 89057699 89057760 -73542170 + L1MB4 LINE L1 4769 4828 -1554 659 192 42 0 chrX 89057784 89057904 -73542026 - FLAM_C SINE Alu -18 125 1 2974 209 99 11 chrX 89057961 89059388 -73540542 + L1MB4 LINE L1 4875 6416 0 304 259 91 57 chrX 89059493 89059844 -73540086 + L1ME3A LINE L1 1210 1572 -4958 24 120 0 0 chrX 89059919 89060069 -73539861 + AT_rich Low_complexity Low_complexity 1 150 0 242 283 33 0 chrX 89060106 89060226 -73539704 + L1ME3A LINE L1 1675 1798 -4923 331 331 99 11 chrX 89060728 89061059 -73538871 + L1ME3A LINE L1 2334 2684 -3856 449 251 118 32 chrX 89061205 89061612 -73538318 + L1MC5 LINE L1 7338 7779 -182 1795 111 37 65 chrX 89061745 89062097 -73537833 + L1MA9 LINE L1 5971 6312 0 21 0 0 0 chrX 89062100 89062121 -73537809 + AT_rich Low_complexity Low_complexity 1 21 0 396 321 16 27 chrX 89062271 89062458 -73537472 - MLT1K LTR MaLR -12 576 392 581 256 126 28 chrX 89064893 89065249 -73534681 + L1ME3A LINE L1 4955 5345 -1195 365 282 37 37 chrX 89065311 89065474 -73534456 + LTR65 LTR ERV1 2 164 -505 339 241 14 47 chrX 89065659 89065779 -73534151 + LTR65 LTR ERV1 534 604 -10 522 249 15 85 chrX 89065789 89066130 -73533800 + L1ME3A LINE L1 5402 5718 -822 1188 258 23 37 chrX 89066178 89066613 -73533317 + L1ME3A LINE L1 5945 6373 -191 1776 207 24 11 chrX 89067274 89067656 -73532274 - MLT1B LTR MaLR -3 387 1 27 0 0 0 chrX 89067698 89067725 -73532205 + AT_rich Low_complexity Low_complexity 1 27 0 1131 185 129 40 chrX 89067835 89068007 -73531923 + MLT1B LTR MaLR 1 156 -234 315 0 0 0 chrX 89068007 89068042 -73531888 + (CA)n Simple_repeat Simple_repeat 2 36 0 213 39 0 0 chrX 89068041 89068067 -73531863 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1131 185 129 40 chrX 89068042 89068195 -73531735 + MLT1B LTR MaLR 156 328 -62 716 259 26 11 chrX 89068195 89068384 -73531546 - MLT1A1 LTR MaLR 0 365 174 437 198 102 114 chrX 89068452 89068619 -73531311 - MLT1A1 LTR MaLR -171 194 30 286 203 17 0 chrX 89068632 89068691 -73531239 + MLT1B LTR MaLR 331 390 0 5058 149 4 0 chrX 89068835 89070355 -73529575 - L1PA13 LINE L1 0 6814 5282 1136 124 0 0 chrX 89070355 89070508 -73529422 - AluSp SINE Alu -27 286 134 13171 221 24 16 chrX 89070513 89075735 -73524195 - L1PA13 LINE L1 -1510 5287 1 557 188 9 13 chrX 89075774 89075905 -73524025 + L1ME LINE L1 5607 5727 -439 264 212 0 0 chrX 89076033 89076099 -73523831 + (TA)n Simple_repeat Simple_repeat 2 67 0 384 349 90 18 chrX 89076284 89076728 -73523202 + L1MEc LINE L1 55 530 -5866 303 259 22 49 chrX 89076836 89077021 -73522909 + L1MEc LINE L1 688 867 -5529 * 2242 254 30 27 chrX 89077002 89077894 -73522036 + L1MEc LINE L1 2345 3239 -2976 231 163 0 0 chrX 89077915 89077958 -73521972 - L1PA15-16 LINE L1 -4015 2834 2792 3083 114 29 44 chrX 89078003 89078529 -73521401 + L1PA13 LINE L1 5645 6162 -1 3068 253 41 23 chrX 89078539 89079652 -73520278 + L1 LINE L1 2148 3280 -2866 2387 131 24 5 chrX 89079651 89080026 -73519904 + MSTA-int LTR MaLR 1270 1651 0 * 2205 133 84 30 chrX 89080026 89080086 -73519844 + MSTA LTR MaLR 1 56 -372 2107 135 0 0 chrX 89080086 89080382 -73519548 + AluSx SINE Alu 1 296 -16 2205 133 84 30 chrX 89080382 89080727 -73519203 + MSTA LTR MaLR 56 428 0 433 128 26 0 chrX 89081394 89081472 -73518458 + MADE1 DNA Mariner 1 80 0 228 35 0 0 chrX 89081883 89081912 -73518018 + (TC)n Simple_repeat Simple_repeat 2 30 0 252 234 28 28 chrX 89081912 89082053 -73517877 + (TATAA)n Simple_repeat Simple_repeat 5 145 0 21 57 0 0 chrX 89082507 89082542 -73517388 + AT_rich Low_complexity Low_complexity 1 35 0 381 285 71 38 chrX 89082566 89082833 -73517097 - L1MC5 LINE L1 -192 7769 7494 622 204 184 14 chrX 89082859 89083006 -73516924 + MER5A DNA MER1_type 17 188 -1 252 337 0 0 chrX 89083008 89083097 -73516833 - L1MC5 LINE L1 -527 7434 7346 1226 286 90 48 chrX 89083275 89084822 -73515108 - L1MC4 LINE L1 -735 7226 5612 1456 251 72 88 chrX 89084843 89085398 -73514532 + MLT2B3 LTR ERVL 1 546 -8 1601 227 37 27 chrX 89085402 89085803 -73514127 - LTR52 LTR ERVL -10 411 7 553 248 100 38 chrX 89085803 89085897 -73514033 - L1MC4 LINE L1 -2215 5593 5506 243 0 0 0 chrX 89085897 89085924 -73514006 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 553 248 100 38 chrX 89085924 89086039 -73513891 - L1MC4 LINE L1 -2302 5506 5371 23 0 0 0 chrX 89086157 89086180 -73513750 + AT_rich Low_complexity Low_complexity 1 23 0 396 222 65 0 chrX 89088161 89088269 -73511661 - L1MC/D LINE L1 -2323 5554 5440 272 336 80 28 chrX 89088614 89089039 -73510891 - L1MC/D LINE L1 -1167 5048 4602 3715 138 44 64 chrX 89089099 89089803 -73510127 + LTR8 LTR ERV1 2 691 0 688 196 161 12 chrX 89089811 89089979 -73509951 - MER6B DNA MER2_type -3 207 15 245 326 0 11 chrX 89092231 89092320 -73507610 - Charlie8 DNA MER1_type -2199 218 131 698 258 7 40 chrX 89093599 89093983 -73505947 - L1MEc LINE L1 -3660 2555 688 396 358 36 45 chrX 89094009 89094341 -73505589 - L1MEc LINE L1 -5830 566 238 327 219 94 42 chrX 89095943 89096039 -73503891 + L1MC4 LINE L1 6602 6702 -1340 2246 107 7 7 chrX 89096136 89096444 -73503486 + AluSg1 SINE Alu 1 308 -1 493 184 50 1 chrX 89096500 89096615 -73503315 - L1MC/D LINE L1 -439 5727 5620 17158 206 28 10 chrX 89096677 89103297 -73496633 + L1PA13 LINE L1 1 6812 -2 5716 204 24 29 chrX 89104384 89105884 -73494046 + L1PB1 LINE L1 3871 5363 -783 894 106 0 8 chrX 89105877 89106009 -73493921 + L1PA11 LINE L1 5725 5855 -319 * 5130 102 26 5 chrX 89106008 89106771 -73493159 + L1PB1 LINE L1 5367 6145 -6 249 362 75 32 chrX 89106808 89106996 -73492934 - MLT1K LTR MaLR -188 400 205 2915 155 8 10 chrX 89107246 89107743 -73492187 + L1PA13 LINE L1 5668 6163 0 243 277 24 0 chrX 89107745 89107828 -73492102 - L1M4 LINE L1 -1587 4559 4475 1942 243 33 19 chrX 89107852 89108298 -73491632 - L1M3 LINE L1 -393 5790 5333 2135 126 3 3 chrX 89108298 89108599 -73491331 - AluSx SINE Alu -11 301 1 1942 243 33 19 chrX 89108599 89108759 -73491171 - L1M3 LINE L1 -850 5333 5177 5117 201 9 38 chrX 89108760 89109461 -73490469 - MSTA-int LTR MaLR -610 1041 321 2186 117 0 10 chrX 89109461 89109760 -73490170 - AluSx SINE Alu -13 299 4 5117 201 9 38 chrX 89109760 89109776 -73490154 - MSTA-int LTR MaLR -1330 321 306 2090 104 0 60 chrX 89109776 89110092 -73489838 - AluSg SINE Alu -13 297 1 5117 201 9 38 chrX 89110092 89110257 -73489673 - MSTA-int LTR MaLR -1345 306 192 3132 178 22 2 chrX 89110257 89110803 -73489127 - MER41D LTR ERV1 0 557 1 5117 201 9 38 chrX 89110803 89110990 -73488940 - MSTA-int LTR MaLR -1459 192 1 2228 167 54 2 chrX 89110990 89111397 -73488533 - MSTA LTR MaLR 0 428 1 2089 130 10 0 chrX 89111672 89111972 -73487958 - AluSg SINE Alu -7 303 1 21 0 0 0 chrX 89112016 89112037 -73487893 + AT_rich Low_complexity Low_complexity 1 21 0 585 256 69 13 chrX 89112074 89112379 -73487551 - L1M3 LINE L1 -1446 4700 4379 670 215 27 16 chrX 89112677 89112863 -73487067 - MER53 DNA DNA 0 189 2 812 283 109 45 chrX 89113253 89114320 -73485610 - L1M3 LINE L1 -2576 3570 2437 1327 232 73 59 chrX 89114392 89114826 -73485104 - MLT2C2 LTR ERVL -20 534 1 328 242 171 40 chrX 89114832 89115130 -73484800 - L1M3 LINE L1 -3700 2446 2110 25 0 0 0 chrX 89115520 89115545 -73484385 + AT_rich Low_complexity Low_complexity 1 25 0 995 102 0 0 chrX 89115558 89115686 -73484244 + AluSq/x SINE Alu 6 133 -180 255 61 0 0 chrX 89115686 89115719 -73484211 + (A)n Simple_repeat Simple_repeat 1 33 0 645 275 45 6 chrX 89116136 89116314 -73483616 - MER20 DNA MER1_type -1 218 34 252 93 93 0 chrX 89116347 89116390 -73483540 - MLT1D LTR MaLR -9 496 450 17382 179 35 38 chrX 89116394 89119906 -73480024 + L1MA2 LINE L1 12 3533 -4190 195 42 0 0 chrX 89119906 89119930 -73480000 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 17382 179 35 38 chrX 89119930 89120036 -73479894 + L1MA2 LINE L1 3533 3638 -4085 2321 69 0 0 chrX 89120036 89120385 -73479545 + AluY SINE Alu 1 311 0 17382 179 35 38 chrX 89120385 89122946 -73476984 + L1MA2 LINE L1 3638 6205 -1518 1921 80 0 0 chrX 89122946 89123185 -73476745 + AluY SINE Alu 1 239 -72 17382 179 35 38 chrX 89123185 89123738 -73476192 + L1MA2 LINE L1 6205 6758 -965 333 47 0 0 chrX 89123738 89123781 -73476149 + (TA)n Simple_repeat Simple_repeat 2 44 0 17382 179 35 38 chrX 89123781 89124754 -73475176 + L1MA2 LINE L1 6758 7723 0 279 79 0 0 chrX 89124811 89124849 -73475081 + (A)n Simple_repeat Simple_repeat 1 38 0 4918 174 71 20 chrX 89124864 89125298 -73474632 + L1MA4 LINE L1 4681 5091 -1209 219 114 0 0 chrX 89125298 89125333 -73474597 + (CA)n Simple_repeat Simple_repeat 2 36 0 4918 174 71 20 chrX 89125333 89125486 -73474444 + L1MA4 LINE L1 5091 5235 -1065 2217 114 0 0 chrX 89125486 89125792 -73474138 + AluSc SINE Alu 1 306 -3 4918 174 71 20 chrX 89125792 89126724 -73473206 + L1MA4 LINE L1 5235 6284 -16 2301 75 3 0 chrX 89126727 89127022 -73472908 - AluY SINE Alu -15 296 1 1577 263 49 29 chrX 89127101 89127546 -73472384 - MLT1D LTR MaLR -51 454 1 366 333 13 47 chrX 89127547 89127697 -73472233 - MLT1H LTR MaLR -210 339 195 388 191 53 11 chrX 89127967 89128061 -73471869 - L1MEd LINE L1 -4867 1252 1155 282 234 55 21 chrX 89128099 89128244 -73471686 - HAL1 LINE L1 -335 2172 2023 1414 86 10 0 chrX 89128632 89128830 -73471100 + L1PB1 LINE L1 5950 6149 -2 22 0 0 0 chrX 89128831 89128853 -73471077 + AT_rich Low_complexity Low_complexity 1 22 0 1480 257 126 31 chrX 89128881 89129582 -73470348 + HAL1 LINE L1 1010 1776 -731 4838 226 15 10 chrX 89129660 89131331 -73468599 - L1PA15-16 LINE L1 -3154 3695 2014 6257 45 7 0 chrX 89231362 89232137 -73367793 - L1PA4 LINE L1 -15 6140 5361 * 7630 31 0 0 chrX 89232136 89233060 -73366870 + L1P LINE L1 4357 5280 -866 5270 106 31 0 chrX 89233052 89233900 -73366030 + L1PBa LINE L1 1116 2132 -4731 * 5550 246 17 19 chrX 89234078 89236116 -73363814 + L1M3de LINE L1 2004 4124 -2608 3663 120 16 17 chrX 89236262 89237016 -73362914 + L1P5 LINE L1 5037 5795 -356 2789 95 5 17 chrX 89237016 89237419 -73362511 + L1PB1 LINE L1 5745 6150 -1 265 174 0 0 chrX 89237434 89237480 -73362450 + MER63 DNA MER1_type 949 994 -68 1006 313 27 12 chrX 89237759 89238094 -73361836 - MLT1J LTR MaLR -171 340 1 434 317 73 8 chrX 89238095 89238354 -73361576 - L1 LINE L1 -2451 3695 3420 500 300 110 28 chrX 89238366 89238660 -73361270 - L1 LINE L1 -2754 3392 3074 570 184 9 0 chrX 89238769 89238878 -73361052 - L1PA10 LINE L1 -17 6151 6042 357 257 115 9 chrX 89240689 89240802 -73359128 - MIR SINE MIR -91 171 47 250 348 20 100 chrX 89241045 89241295 -73358635 - L2 LINE L2 -90 3182 2953 773 171 160 6 chrX 89241672 89241847 -73358083 - AluSg SINE Alu -108 202 1 255 364 27 9 chrX 89242042 89242152 -73357778 - MIR SINE MIR -44 218 107 648 224 0 0 chrX 89242490 89242615 -73357315 + FLAM_A SINE Alu 1 125 -8 556 289 58 14 chrX 89242800 89243146 -73356784 - L1ME LINE L1 -299 5891 5397 1743 243 96 48 chrX 89244021 89244851 -73355079 - L1ME LINE L1 -4924 1472 603 270 29 0 0 chrX 89244851 89244885 -73355045 - L1P LINE L1 -811 5352 5319 4584 105 41 3 chrX 89244887 89245571 -73354359 + L1PA14 LINE L1 5450 6159 -2 9287 189 43 11 chrX 89245571 89248232 -73351698 + L1MA8 LINE L1 3263 6008 -283 247 271 0 2 chrX 89248346 89248450 -73351480 + L1P LINE L1 4944 5046 -1100 540 295 40 77 chrX 89248737 89249049 -73350881 + L1ME4a LINE L1 5415 5708 -413 2156 86 0 0 chrX 89249049 89249328 -73350602 + AluSx SINE Alu 2 280 -32 540 295 40 77 chrX 89249328 89249445 -73350485 + L1ME4a LINE L1 5708 5828 -293 189 107 0 0 chrX 89251761 89251789 -73348141 + (CAT)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chrX 89252205 89252236 -73347694 + AT_rich Low_complexity Low_complexity 1 31 0 809 230 0 72 chrX 89252389 89252624 -73347306 - MER20 DNA MER1_type 0 219 2 363 270 214 0 chrX 89252674 89252794 -73347136 + MIR SINE MIR 2 148 -114 890 291 44 0 chrX 89252794 89253045 -73346885 + MIR SINE MIR 1 262 0 320 332 48 37 chrX 89253332 89253519 -73346411 + MIR SINE MIR 32 220 -42 2224 111 0 3 chrX 89253546 89253852 -73346078 + AluSc SINE Alu 1 305 -4 32 57 0 0 chrX 89254186 89254239 -73345691 + AT_rich Low_complexity Low_complexity 1 53 0 1953 233 99 6 chrX 89255974 89256490 -73343440 + MLT1F1 LTR MaLR 1 564 -3 377 205 62 18 chrX 89256726 89256838 -73343092 + L1ME4a LINE L1 5983 6099 -22 207 227 0 0 chrX 89256839 89256883 -73343047 - L2 LINE L2 -8 3305 3262 757 306 123 19 chrX 89256909 89257357 -73342573 - L2 LINE L2 -44 3269 2768 3757 159 22 0 chrX 89258136 89258829 -73341101 + L1MA4 LINE L1 5589 6296 -4 191 394 19 19 chrX 89259009 89259164 -73340766 + L2 LINE L2 1153 1307 -2007 256 305 110 24 chrX 89259233 89259315 -73340615 - L2 LINE L2 -16 3256 3168 1511 216 36 36 chrX 89259330 89259806 -73340124 - Charlie1 DNA MER1_type -1 2760 2285 232 231 19 0 chrX 89259980 89260032 -73339898 + C-rich Low_complexity Low_complexity 5 57 0 5751 155 14 25 chrX 89263384 89263523 -73336407 - L1MA7 LINE L1 -1 6290 6151 1381 206 6 60 chrX 89263523 89263839 -73336091 - AluJo SINE Alu -3 299 1 5751 155 14 25 chrX 89263839 89265033 -73334897 - L1MA7 LINE L1 -140 6151 4970 1873 145 3 3 chrX 89265069 89265359 -73334571 + AluSx SINE Alu 1 290 -22 475 187 110 35 chrX 89265797 89265943 -73333987 - L1MB7 LINE L1 0 6184 6027 597 315 116 40 chrX 89266005 89266478 -73333452 + LTR33 LTR ERVL 2 510 -11 679 333 44 27 chrX 89268038 89268335 -73331595 + MLT1J2 LTR MaLR 1 302 -148 2024 113 7 0 chrX 89268783 89269094 -73330836 - AluSq SINE Alu 0 313 1 330 75 19 0 chrX 89269734 89269787 -73330143 + L1PA2 LINE L1 6102 6155 0 2817 153 8 20 chrX 89269788 89270286 -73329644 - L1PBa LINE L1 -5738 1125 634 599 168 8 16 chrX 89270279 89270404 -73329526 - L1PBa LINE L1 -6658 205 82 * 887 310 89 29 chrX 89270392 89271556 -73328374 + L1M4 LINE L1 3815 5048 -1098 719 193 153 0 chrX 89271530 89271732 -73328198 + L1MC4 LINE L1 7558 7790 -252 * 32 26 0 0 chrX 89271732 89271771 -73328159 + AT_rich Low_complexity Low_complexity 1 39 0 1847 113 0 0 chrX 89271974 89272257 -73327673 - L1P LINE L1 -1277 4869 4587 2159 38 4 0 chrX 89272257 89272519 -73327411 + L1PA7 LINE L1 5743 6005 -149 1496 145 0 13 chrX 89272532 89272759 -73327171 + AluSg/x SINE Alu 69 292 -18 354 252 59 0 chrX 89272932 89273051 -73326879 + L1M4 LINE L1 5614 5739 -445 458 284 70 76 chrX 89273052 89273566 -73326364 + L1M4 LINE L1 2670 3180 -2966 641 286 15 5 chrX 89274007 89274210 -73325720 - L1ME2 LINE L1 -9 6155 5951 275 143 63 16 chrX 89274212 89274275 -73325655 - L1M4 LINE L1 -1967 4179 4114 1093 245 59 40 chrX 89274277 89274747 -73325183 + MLT1F1 LTR MaLR 3 560 -7 2554 272 74 32 chrX 89274751 89275079 -73324851 - L1M4 LINE L1 -2038 4108 3795 2115 247 87 18 chrX 89275079 89275634 -73324296 + MLT1E LTR MaLR 1 593 0 2554 272 74 32 chrX 89275634 89276689 -73323241 - L1M4 LINE L1 -2351 3795 2667 228 135 0 0 chrX 89276704 89276741 -73323189 + (TA)n Simple_repeat Simple_repeat 1 37 0 256 250 34 11 chrX 89276786 89276874 -73323056 - L1M4 LINE L1 -3642 2504 2415 264 235 44 52 chrX 89276895 89277031 -73322899 - L1M4 LINE L1 -3830 2316 2182 405 238 50 0 chrX 89277684 89277785 -73322145 + FRAM SINE Alu 63 168 -8 2086 114 39 0 chrX 89277911 89278192 -73321738 - AluSc SINE Alu -17 292 1 6395 166 24 56 chrX 89278431 89279752 -73320178 - MER52C LTR ERV1 0 1278 1 792 145 16 91 chrX 89279939 89280125 -73319805 - MER52C-int LTR ERV1 -4097 2166 1995 780 171 6 43 chrX 89280127 89280291 -73319639 - MER52C-int LTR ERV1 -4799 1147 990 * 3747 172 28 18 chrX 89280290 89280975 -73318955 - MER52C-int LTR ERV1 -5593 1498 807 6639 169 18 3 chrX 89280991 89282343 -73317587 - MER52C-int LTR ERV1 -3885 3206 1757 3378 150 32 14 chrX 89282492 89283052 -73316878 - MER52C-int LTR ERV1 -6520 571 2 6765 147 22 62 chrX 89283052 89284383 -73315547 - MER52C LTR ERV1 0 1278 1 6431 170 10 1 chrX 89285234 89287066 -73312864 - L1MA1 LINE L1 0 6302 4456 810 98 21 91 chrX 89287174 89287317 -73312613 - MER57-int LTR ERV1 -67 7024 6892 4494 152 52 29 chrX 89287319 89288919 -73311011 - MER57-int LTR ERV1 -3023 4514 592 1424 170 87 21 chrX 89288897 89289185 -73310745 - MER57-int LTR ERV1 -3926 3611 3305 * 46 33 0 0 chrX 89289383 89289443 -73310487 + AT_rich Low_complexity Low_complexity 1 60 0 208 102 41 0 chrX 89289443 89289492 -73310438 + A-rich Low_complexity Low_complexity 1 51 0 51 58 0 0 chrX 89289492 89289578 -73310352 + AT_rich Low_complexity Low_complexity 1 86 0 2099 128 0 3 chrX 89289986 89290282 -73309648 - AluSg SINE Alu -15 295 1 25 51 0 0 chrX 89290285 89290324 -73309606 + AT_rich Low_complexity Low_complexity 1 39 0 327 269 174 0 chrX 89290341 89290553 -73309377 - L1M4 LINE L1 -748 6817 6569 389 306 80 48 chrX 89290791 89291563 -73308367 - L1M4 LINE L1 -1300 6265 5469 342 211 28 0 chrX 89291576 89291647 -73308283 + MIR SINE MIR 188 260 -2 287 269 54 0 chrX 89291960 89292053 -73307877 + L2 LINE L2 2014 2111 -1203 3569 206 35 9 chrX 89292413 89293584 -73306346 - L1M4 LINE L1 -3021 4544 3338 6201 134 20 30 chrX 89293587 89294663 -73305267 - MER11C LTR ERVK -5 1066 1 4299 142 21 24 chrX 89294663 89295466 -73304464 - L1M4 LINE L1 -4219 3346 2546 * 11810 218 16 7 chrX 89295463 89297773 -73302157 - L1M4 LINE L1 -5222 2343 12 22 0 0 0 chrX 89297892 89297914 -73302016 + AT_rich Low_complexity Low_complexity 1 22 0 201 196 0 0 chrX 89297917 89297963 -73301967 + (TA)n Simple_repeat Simple_repeat 2 47 0 390 43 0 0 chrX 89298081 89298127 -73301803 + L1MA1 LINE L1 6173 6218 -84 293 262 57 97 chrX 89298126 89298424 -73301506 - L1MC4 LINE L1 -277 7765 7480 * 572 255 154 69 chrX 89298562 89298830 -73301100 - MLT1J LTR MaLR -173 338 39 2549 47 0 0 chrX 89298830 89299130 -73300800 + AluY SINE Alu 1 300 -11 572 255 154 69 chrX 89299130 89299167 -73300763 - MLT1J LTR MaLR -472 39 7 983 284 172 11 chrX 89300050 89300487 -73299443 - MLT1J LTR MaLR -4 507 1 543 182 10 0 chrX 89301506 89301605 -73298325 + AluJ/FLAM SINE Alu 1 100 -212 2049 171 43 7 chrX 89301635 89302051 -73297879 - L1MA4A LINE L1 -340 5963 5533 * 2196 204 12 14 chrX 89302049 89302493 -73297437 - L1MA4A LINE L1 -955 5191 4747 2092 136 0 0 chrX 89302493 89302788 -73297142 - AluSg SINE Alu -15 295 1 2196 204 12 14 chrX 89302788 89302829 -73297101 - L1MA4A LINE L1 -1399 4747 4707 3752 141 48 12 chrX 89302829 89303089 -73296841 - L1PA16 LINE L1 0 6166 5917 198 118 0 0 chrX 89303089 89303123 -73296807 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3752 141 48 12 chrX 89303123 89303508 -73296422 - L1PA16 LINE L1 -249 5917 5498 2761 224 41 2 chrX 89303508 89304323 -73295607 + L1PA16 LINE L1 4643 5484 -682 * 10606 232 46 35 chrX 89304321 89309541 -73290389 - L1 LINE L1 -1435 5413 11 2611 84 0 17 chrX 89309851 89310206 -73289724 + THE1A LTR MaLR 3 351 -4 10739 112 27 1 chrX 89310211 89311751 -73288179 + THE1A-int LTR MaLR 1 1580 0 2704 89 0 0 chrX 89311751 89312101 -73287829 + THE1A LTR MaLR 1 350 -5 234 313 60 12 chrX 89312168 89312251 -73287679 - MIR SINE MIR -169 93 7 522 305 65 65 chrX 89312431 89312880 -73287050 - MLT1J LTR MaLR -62 449 1 2652 152 96 50 chrX 89313175 89313833 -73286097 - LTR12 LTR ERV1 0 688 1 215 382 20 10 chrX 89313919 89314021 -73285909 - L2 LINE L2 -212 3060 2958 2112 125 0 0 chrX 89314427 89314724 -73285206 - AluSg SINE Alu -13 297 1 23 0 0 0 chrX 89314807 89314830 -73285100 + AT_rich Low_complexity Low_complexity 1 23 0 311 298 19 30 chrX 89315256 89315423 -73284507 + MIR SINE MIR 21 260 -2 289 265 0 29 chrX 89316306 89316374 -73283556 + MIR SINE MIR 48 113 -149 587 308 32 39 chrX 89317488 89317796 -73282134 + L1ME4a LINE L1 177 482 -6081 1800 287 41 11 chrX 89317860 89318737 -73281193 - L1M4b LINE L1 -3355 3602 2742 1940 258 43 30 chrX 89319133 89319874 -73280056 - L1M4b LINE L1 -4491 2468 1719 2434 152 52 2 chrX 89319874 89320282 -73279648 - MSTA LTR MaLR 0 428 1 1940 258 43 30 chrX 89320282 89320477 -73279453 - L1M4b LINE L1 -5240 1719 1528 1375 240 5 56 chrX 89320480 89320893 -73279037 - L1M4b LINE L1 -5479 1380 989 4058 269 45 22 chrX 89320953 89322964 -73276966 + L1ME4a LINE L1 1046 3247 -3135 1486 217 59 48 chrX 89322964 89323425 -73276505 - MLT1C LTR MaLR 0 467 2 4058 269 45 22 chrX 89323425 89324100 -73275830 + L1ME4a LINE L1 3247 3905 -2477 1038 227 28 49 chrX 89324104 89324390 -73275540 - MLT1A1 LTR MaLR 0 365 86 * 1258 242 61 15 chrX 89324389 89324732 -73275198 - MLT1A1 LTR MaLR -6 359 1 4231 255 45 18 chrX 89324732 89325764 -73274166 - MLT1A1-int LTR MaLR 0 1735 677 1511 167 27 20 chrX 89325769 89326063 -73273867 - MLT1A1-int LTR MaLR -1439 296 1 1019 231 9 13 chrX 89326063 89326288 -73273642 - MLT1A1 LTR MaLR 0 365 142 21137 104 7 0 chrX 89326293 89330190 -73269740 - L1PA8A LINE L1 -13 6118 2195 2123 122 0 0 chrX 89330199 89330495 -73269435 - AluSc SINE Alu -13 296 1 624 216 26 26 chrX 89330498 89330651 -73269279 - MLT1A1 LTR MaLR -212 153 1 499 186 0 59 chrX 89330651 89330751 -73269179 - MLT1A1 LTR MaLR -280 94 1 1150 231 29 29 chrX 89330770 89331112 -73268818 + L1ME4a LINE L1 3928 4269 -2113 2406 253 41 22 chrX 89331112 89332014 -73267916 + L1ME4a LINE L1 4594 5512 -870 * 4115 225 30 14 chrX 89331990 89333754 -73266176 + L1MB7 LINE L1 4625 6417 -3 304 357 55 42 chrX 89334193 89334451 -73265479 - L2 LINE L2 -121 3192 2926 2224 169 45 24 chrX 89334451 89334870 -73265060 - MSTC LTR MaLR 0 428 1 304 357 55 42 chrX 89334870 89334995 -73264935 - L2 LINE L2 -387 2926 2804 1232 268 133 55 chrX 89336554 89337066 -73262864 + MLT1G1 LTR MaLR 44 595 0 842 294 106 31 chrX 89337066 89337426 -73262504 + L2 LINE L2 2270 2656 -658 1339 223 140 28 chrX 89337426 89337825 -73262105 - MSTB2 LTR MaLR -13 444 1 334 343 14 7 chrX 89337899 89338042 -73261888 + L2 LINE L2 2782 2925 -389 300 216 0 0 chrX 89338026 89338077 -73261853 + L2 LINE L2 3253 3303 -10 * 187 303 119 94 chrX 89338366 89338643 -73261287 - L2 LINE L2 -173 3099 2816 390 284 84 26 chrX 89338999 89339189 -73260741 + L1ME4a LINE L1 5954 6154 -203 397 58 0 0 chrX 89339249 89339301 -73260629 - MLT2A1 LTR ERVL -2 451 400 474 50 76 35 chrX 89339310 89339655 -73260275 + (TA)n Simple_repeat Simple_repeat 1 359 0 2608 101 43 13 chrX 89339655 89340052 -73259878 - MLT2A1 LTR ERVL -35 409 1 1270 310 17 8 chrX 89340061 89340413 -73259517 + MLT1F LTR MaLR 39 393 -149 237 121 136 45 chrX 89340489 89340555 -73259375 - LTR48 LTR ERV1 -46 741 670 550 229 20 39 chrX 89340919 89341072 -73258858 + MLT1F LTR MaLR 390 539 -3 24 0 0 0 chrX 89341115 89341139 -73258791 + AT_rich Low_complexity Low_complexity 1 24 0 642 187 0 8 chrX 89341172 89341295 -73258635 + FLAM_C SINE Alu 1 122 -21 357 181 4 40 chrX 89341409 89341513 -73258417 + LTR24B LTR ERV1 1 99 -366 513 247 138 28 chrX 89341588 89341885 -73258045 + LTR24B LTR ERV1 145 569 0 578 227 24 81 chrX 89341899 89342209 -73257721 + LTR24B-int LTR ERV1 16 451 -4672 216 58 39 39 chrX 89342212 89342264 -73257666 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 23 0 0 0 chrX 89343158 89343181 -73256749 + AT_rich Low_complexity Low_complexity 1 23 0 5235 157 29 33 chrX 89343800 89344643 -73255287 - L1PA16 LINE L1 -9 6157 5312 1918 165 17 25 chrX 89344643 89345001 -73254929 - L1PA15 LINE L1 0 6165 5811 5235 157 29 33 chrX 89345001 89345735 -73254195 - L1PA16 LINE L1 -854 5312 4576 578 116 0 0 chrX 89345785 89345871 -73254059 - L1PA15 LINE L1 -568 5598 5513 451 329 41 0 chrX 89346015 89346161 -73253769 + LTR24B-int LTR ERV1 351 502 -4145 270 327 47 54 chrX 89346418 89346696 -73253234 + PABL_B-int LTR ERV1 3207 3482 -3640 326 343 20 36 chrX 89347185 89347436 -73252494 + PABL_B-int LTR ERV1 4718 4964 -3771 200 118 29 0 chrX 89347527 89347561 -73252369 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 285 334 37 40 chrX 89347915 89348204 -73251726 + PABL_B-int LTR ERV1 2142 2373 -2274 192 40 0 0 chrX 89348579 89348604 -73251326 + (A)n Simple_repeat Simple_repeat 1 25 0 349 362 49 41 chrX 89348980 89349488 -73250442 + PABL_B-int LTR ERV1 5633 6144 -978 328 330 9 9 chrX 89349705 89349814 -73250116 + PABL_B-int LTR ERV1 6231 6339 -783 1069 256 65 41 chrX 89350483 89350517 -73249413 + L1PA16 LINE L1 2266 2298 -5276 243 0 0 0 chrX 89350517 89350544 -73249386 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1069 256 65 41 chrX 89350544 89350938 -73248992 + L1PA16 LINE L1 2298 2639 -4935 1900 181 20 88 chrX 89350938 89351130 -73248800 + MSTB LTR MaLR 1 204 -222 2628 108 7 12 chrX 89351130 89351536 -73248394 + L1MA1 LINE L1 5890 6293 -9 1900 181 20 88 chrX 89351536 89351784 -73248146 + MSTB LTR MaLR 204 411 -15 7470 230 11 22 chrX 89351805 89353468 -73246462 + MSTB-int LTR MaLR 7 1651 0 1726 229 57 7 chrX 89353468 89353874 -73246056 + MSTB LTR MaLR 1 426 0 11316 235 32 33 chrX 89353874 89354744 -73245186 + L1PA16 LINE L1 2654 3523 -4081 1922 110 4 0 chrX 89354744 89354999 -73244931 - AluSq SINE Alu -24 289 34 11316 235 32 33 chrX 89354999 89355948 -73243982 + L1PA16 LINE L1 3523 4471 -3133 913 100 0 0 chrX 89355948 89356078 -73243852 + L1PB1 LINE L1 6016 6145 -6 11316 235 32 33 chrX 89356078 89359178 -73240752 + L1PA16 LINE L1 4471 7596 -8 517 231 86 110 chrX 89359411 89359783 -73240147 + LTR24B LTR ERV1 207 569 -7 535 277 48 12 chrX 89360643 89360809 -73239121 - MIR SINE MIR 0 262 91 674 310 41 20 chrX 89361447 89361692 -73238238 - MIR SINE MIR -10 252 3 1927 158 134 11 chrX 89363496 89363877 -73236053 - MSTA LTR MaLR 0 428 1 1799 83 4 19 chrX 89363883 89364147 -73235783 - MSTA-int LTR MaLR -6 1574 1315 1817 175 116 13 chrX 89364174 89364562 -73235368 - MSTA LTR MaLR 0 428 1 658 263 43 11 chrX 89364874 89365060 -73234870 - L1ME3A LINE L1 0 6170 5979 260 295 22 58 chrX 89365072 89365211 -73234719 - L1ME3A LINE L1 -70 6100 5967 1945 256 49 45 chrX 89365304 89366199 -73233731 - L1MC5 LINE L1 -431 7530 6632 2097 190 26 14 chrX 89366497 89366913 -73233017 + MSTA LTR MaLR 1 421 -7 3021 161 45 23 chrX 89366917 89367490 -73232440 - LTR49 LTR ERV1 -7 588 3 8766 172 51 37 chrX 89367497 89370240 -73229690 - LTR49-int LTR ERV1 -4 6327 3625 260 53 0 0 chrX 89370240 89370278 -73229652 + L1PB3 LINE L1 6083 6120 -34 384 40 0 0 chrX 89370278 89370328 -73229602 + (CA)n Simple_repeat Simple_repeat 1 50 0 8766 172 51 37 chrX 89370328 89370595 -73229335 - LTR49-int LTR ERV1 -2705 3626 3259 17015 198 52 10 chrX 89370611 89374067 -73225863 + L1PB3 LINE L1 12 3611 -3954 326 155 0 0 chrX 89374067 89374125 -73225805 - MSTA LTR MaLR 0 428 371 1405 200 12 25 chrX 89374154 89374509 -73225421 - MSTA-int LTR MaLR -14 1637 631 * 1629 158 20 10 chrX 89374502 89374794 -73225136 - MSTA-int LTR MaLR -1282 298 4 1925 150 137 8 chrX 89374797 89375176 -73224754 - MSTA LTR MaLR 0 428 1 12800 200 43 12 chrX 89375177 89375818 -73224112 + L1PB3 LINE L1 3608 4227 -3357 2525 127 3 0 chrX 89375818 89376181 -73223749 + THE1B LTR MaLR 1 364 0 12800 200 43 12 chrX 89376181 89378673 -73221257 + L1PB3 LINE L1 4227 6841 -743 997 172 47 23 chrX 89378678 89378985 -73220945 - LTR49-int LTR ERV1 -5980 351 1 2579 168 53 74 chrX 89378992 89379192 -73220738 - LTR29 LTR ERV1 -5 648 445 2223 124 3 14 chrX 89379192 89379539 -73220391 + L1PB3 LINE L1 7230 7572 -1 2579 168 53 74 chrX 89379539 89379552 -73220378 - LTR29 LTR ERV1 -208 445 433 1608 173 3 14 chrX 89379552 89379913 -73220017 + AluSx SINE Alu 3 360 0 2579 168 53 74 chrX 89379913 89380336 -73219594 - LTR29 LTR ERV1 -220 433 1 2065 179 59 2 chrX 89380346 89380770 -73219160 - LTR49 LTR ERV1 -147 448 1 236 167 0 24 chrX 89381049 89381091 -73218839 + MSTA LTR MaLR 388 428 0 876 243 64 74 chrX 89381724 89382020 -73217910 - L2 LINE L2 -2 3311 3019 708 215 31 0 chrX 89382176 89382339 -73217591 - MER5B DNA MER1_type 0 178 11 2181 102 28 0 chrX 89383310 89383595 -73216335 - AluSq SINE Alu -20 293 1 1970 135 14 0 chrX 89383748 89384044 -73215886 - AluSq SINE Alu -13 300 1 238 330 78 43 chrX 89384457 89384572 -73215358 - MIR3 SINE MIR -44 164 46 250 67 4 0 chrX 89384576 89384618 -73215312 - L1M1 LINE L1 -490 5801 5767 13457 182 22 12 chrX 89384896 89389394 -73210536 - L1MA2 LINE L1 0 7723 3177 5261 29 0 0 chrX 89389394 89390009 -73209921 + L1PA4 LINE L1 5540 6154 -1 277 193 0 18 chrX 89390017 89390074 -73209856 - MLT1G1 LTR MaLR -533 62 7 409 240 193 7 chrX 89390126 89390276 -73209654 + MER2 DNA MER2_type 168 345 0 7054 174 33 15 chrX 89390354 89391791 -73208139 - L1MA2 LINE L1 -4376 3189 1728 5508 124 6 1 chrX 89391837 89392689 -73207241 - L1PA13 LINE L1 -1 6162 5307 2804 248 17 7 chrX 89392682 89394291 -73205639 - L1MA2 LINE L1 -5835 1730 1 * 222 37 0 0 chrX 89394471 89394498 -73205432 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chrX 89394716 89394738 -73205192 + AT_rich Low_complexity Low_complexity 1 22 0 2361 260 35 14 chrX 89395157 89396064 -73203866 - L1PA15-16 LINE L1 -3597 3252 2334 1362 206 31 9 chrX 89396248 89396573 -73203357 - L1PA15-16 LINE L1 -4523 2326 1995 24148 32 0 0 chrX 89396602 89400294 -73199636 - L1PA4 LINE L1 -3 6152 2460 7477 102 40 8 chrX 89400394 89401510 -73198420 - HERVH LTR ERV1 -6561 1152 1 2652 88 98 5 chrX 89401512 89401922 -73198008 - LTR7 LTR ERV1 -2 448 1 2756 216 29 21 chrX 89401922 89402648 -73197282 - L1 LINE L1 -1369 4777 4046 * 4598 269 35 73 chrX 89402644 89406669 -73193261 - L1PA12 LINE L1 -3180 4404 9 180 0 0 0 chrX 89407093 89407113 -73192817 + (TAA)n Simple_repeat Simple_repeat 1 20 0 695 331 29 16 chrX 89407113 89407358 -73192572 - MIR SINE MIR -12 250 3 236 297 75 51 chrX 89409194 89409363 -73190567 + MIR SINE MIR 19 192 -66 213 39 0 0 chrX 89409804 89409830 -73190100 + (T)n Simple_repeat Simple_repeat 1 26 0 2460 171 54 51 chrX 89409943 89410552 -73189378 - LTR36 LTR ERV1 0 611 1 778 253 6 0 chrX 89411220 89411402 -73188528 - MER3 DNA MER1_type -26 183 1 207 0 0 0 chrX 89411548 89411571 -73188359 + (TG)n Simple_repeat Simple_repeat 2 24 0 573 344 103 48 chrX 89411601 89412266 -73187664 - L2 LINE L2 0 3313 2584 2487 69 0 0 chrX 89412266 89412572 -73187358 + AluY SINE Alu 1 306 -5 573 344 103 48 chrX 89412572 89412775 -73187155 - L2 LINE L2 -729 2584 2394 2152 157 46 3 chrX 89412814 89413202 -73186728 - Tigger1 DNA MER2_type -63 2355 1951 1482 208 12 0 chrX 89413213 89413468 -73186462 + L1PA13 LINE L1 2 259 -6528 6504 226 30 5 chrX 89413583 89416060 -73183870 + L1PA13 LINE L1 1174 3727 -3070 1976 189 60 36 chrX 89416078 89416527 -73183403 + LTR2B LTR ERV1 31 490 0 8501 197 14 15 chrX 89416527 89416913 -73183017 + L1PA13 LINE L1 3724 4109 -2688 1916 140 88 20 chrX 89416913 89417264 -73182666 + THE1C LTR MaLR 1 375 0 9300 123 40 43 chrX 89417264 89418848 -73181082 + THE1C-int LTR MaLR 1 1580 0 1917 144 61 19 chrX 89418848 89419208 -73180722 + THE1C LTR MaLR 1 375 0 8501 197 14 15 chrX 89419208 89419861 -73180069 + L1PA13 LINE L1 4107 4759 -2038 1940 190 51 10 chrX 89419861 89420272 -73179658 - MSTA LTR MaLR 0 428 1 8501 197 14 15 chrX 89420272 89420889 -73179041 + L1PA13 LINE L1 4759 5375 -1422 1943 203 124 70 chrX 89420889 89421673 -73178257 - LTR1B LTR ERV1 0 826 1 8501 197 14 15 chrX 89421673 89422334 -73177596 + L1PA13 LINE L1 5375 6035 -762 11218 164 13 9 chrX 89422367 89424322 -73175608 - Tigger1 DNA MER2_type -454 1964 1 199 279 59 0 chrX 89424354 89424422 -73175508 - L2 LINE L2 -955 2359 2288 1816 182 5 32 chrX 89424948 89425321 -73174609 - MLT1A1 LTR MaLR 0 365 3 2338 207 29 53 chrX 89426240 89426335 -73173595 - L1MB7 LINE L1 -8 6176 6080 568 76 13 0 chrX 89426335 89426414 -73173516 + MADE1 DNA Mariner 1 80 0 2338 207 29 53 chrX 89426414 89426942 -73172988 - L1MB7 LINE L1 -104 6080 5568 718 252 108 25 chrX 89426940 89427254 -73172676 + L1M4c LINE L1 1406 1745 -4639 * 2107 162 19 19 chrX 89427256 89427620 -73172310 - THE1B LTR MaLR 0 364 1 10745 98 52 1 chrX 89427620 89429123 -73170807 - THE1B-int LTR MaLR 0 1580 1 2170 156 14 19 chrX 89429123 89429489 -73170441 - THE1B LTR MaLR 0 364 1 291 250 22 0 chrX 89429494 89429586 -73170344 + L1M4c LINE L1 1748 1841 -4543 832 191 6 6 chrX 89429760 89429922 -73170008 - AluJb SINE Alu -150 162 1 4625 167 15 6 chrX 89429956 89431250 -73168680 - L1PA16 LINE L1 -1 6165 4870 239 217 0 0 chrX 89431267 89431343 -73168587 - L1M4c LINE L1 -3939 2445 2370 * 934 278 63 4 chrX 89431337 89431827 -73168103 + L1M4c LINE L1 3179 3697 -2685 21 36 0 0 chrX 89431870 89431898 -73168032 + AT_rich Low_complexity Low_complexity 1 28 0 433 225 75 43 chrX 89431904 89432134 -73167796 + L1M4c LINE L1 3989 4221 -2161 183 129 0 0 chrX 89432175 89432206 -73167724 + (TA)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chrX 89432257 89432283 -73167647 + (GA)n Simple_repeat Simple_repeat 2 27 0 373 252 0 36 chrX 89432296 89432407 -73167523 + L1M4c LINE L1 4255 4361 -2021 18498 69 3 16 chrX 89432507 89435110 -73164820 - L1P LINE L1 -3524 2622 55 507 240 37 89 chrX 89435111 89435319 -73164611 - L1PA15-16 LINE L1 -4839 1364 1172 2134 113 16 26 chrX 89435319 89435628 -73164302 + AluSp SINE Alu 1 306 -7 507 240 37 89 chrX 89435628 89435690 -73164240 - L1PA15-16 LINE L1 -5031 1172 1108 328 216 67 52 chrX 89435826 89435960 -73163970 - L1PA15-16 LINE L1 -5243 961 826 316 232 36 27 chrX 89436970 89437082 -73162848 + L2 LINE L2 2684 2796 -518 2248 117 0 0 chrX 89437672 89437970 -73161960 - AluSq SINE Alu -15 298 1 23 33 0 0 chrX 89438197 89438227 -73161703 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chrX 89438885 89438908 -73161022 + (T)n Simple_repeat Simple_repeat 1 23 0 9143 197 82 42 chrX 89439416 89441190 -73158740 + L1MC1 LINE L1 27 1943 -4483 1843 237 21 7 chrX 89441190 89441608 -73158322 + MSTB LTR MaLR 3 426 0 9143 197 82 42 chrX 89441608 89442416 -73157514 + L1MC1 LINE L1 1943 2717 -3709 5391 227 15 19 chrX 89442425 89443830 -73156100 + L1MC1 LINE L1 4143 5551 -1062 4730 49 5 2 chrX 89443830 89444419 -73155511 + LTR10C LTR ERV1 1 591 0 5391 227 15 19 chrX 89444419 89445473 -73154457 + L1MC1 LINE L1 5551 6607 -6 375 335 60 0 chrX 89446233 89446415 -73153515 - LTR67 LTR ERVL -2 555 363 2196 274 98 29 chrX 89446483 89447320 -73152610 + L1M4b LINE L1 -244 650 -5896 1599 112 0 0 chrX 89447340 89447573 -73152357 - L1PA13 LINE L1 -16 6147 5915 715 152 32 0 chrX 89447573 89447698 -73152232 + MSTA-int LTR MaLR 1523 1651 0 1855 149 23 3 chrX 89447700 89448001 -73151929 + MSTA LTR MaLR 3 309 -119 5701 217 19 11 chrX 89448001 89449153 -73150777 - MSTA-int LTR MaLR -490 1161 1 2526 160 24 2 chrX 89449153 89449572 -73150358 - MSTA LTR MaLR 0 428 1 316 179 183 17 chrX 89449582 89449737 -73150193 + L1M4b LINE L1 1250 1435 -5107 593 29 0 0 chrX 89449766 89449836 -73150094 - L1P1 LINE L1 -385 5770 5701 1222 35 0 0 chrX 89449836 89449980 -73149950 + L1PA3 LINE L1 6009 6152 -3 1017 308 49 13 chrX 89449990 89450617 -73149313 + L1M4b LINE L1 1446 2095 -4551 1147 229 37 160 chrX 89450846 89452096 -73147834 + L1M4b LINE L1 3250 4345 -2299 1259 220 65 7 chrX 89452329 89452606 -73147324 + AluJo SINE Alu 1 293 -9 2916 253 46 6 chrX 89453180 89454632 -73145298 + L1M2 LINE L1 2077 3590 -3258 1988 135 33 3 chrX 89454635 89454939 -73144991 + MER41C LTR ERV1 1 313 -241 340 255 0 43 chrX 89454957 89455051 -73144879 + L1MC4 LINE L1 6614 6703 -1339 356 235 47 0 chrX 89455057 89455142 -73144788 - L1MC4 LINE L1 -1339 6703 6615 310 287 0 11 chrX 89455143 89455230 -73144700 - L1MC4 LINE L1 -1341 6701 6616 309 308 0 11 chrX 89455151 89455242 -73144688 + L1MC4 LINE L1 6614 6703 -1339 * 243 279 47 0 chrX 89455248 89455334 -73144596 - L1MC4 LINE L1 -1339 6703 6614 1161 182 29 0 chrX 89455343 89455354 -73144576 + MER41C LTR ERV1 340 349 -205 288 77 0 0 chrX 89455354 89455393 -73144537 + (CA)n Simple_repeat Simple_repeat 2 40 0 1161 182 29 0 chrX 89455393 89455590 -73144340 + MER41C LTR ERV1 349 554 0 3186 193 40 21 chrX 89455592 89456399 -73143531 + L1M2 LINE L1 3592 4417 -2431 2100 108 20 0 chrX 89456399 89456694 -73143236 + AluSg SINE Alu 1 301 -9 3186 193 40 21 chrX 89456694 89456735 -73143195 + L1M2 LINE L1 4417 4456 -2392 1654 101 0 16 chrX 89456750 89456997 -73142933 + L1MA1 LINE L1 6060 6302 0 26 30 0 0 chrX 89456997 89457030 -73142900 + AT_rich Low_complexity Low_complexity 1 33 0 441 356 14 0 chrX 89457158 89457304 -73142626 + LTR16B LTR ERVL 4 151 -313 301 337 0 0 chrX 89457337 89457429 -73142501 + LTR16B LTR ERVL 233 324 -140 504 211 57 86 chrX 89457801 89457976 -73141954 + MER58C DNA MER1_type 44 213 -2 279 152 0 0 chrX 89458049 89458095 -73141835 + MER4A LTR ERV1 46 91 -573 1635 143 168 76 chrX 89458102 89458472 -73141458 + MER4A LTR ERV1 261 664 0 25 51 0 0 chrX 89459237 89459276 -73140654 + AT_rich Low_complexity Low_complexity 1 39 0 560 257 47 18 chrX 89459907 89460078 -73139852 - MER69A DNA AcHobo 0 177 2 265 315 22 11 chrX 89460085 89460177 -73139753 + MER20B DNA MER1_type 60 152 -631 3360 171 65 24 chrX 89460368 89461042 -73138888 - L1PA16 LINE L1 -1 6165 5464 * 10510 58 10 5 chrX 89461038 89462394 -73137536 - L1P LINE L1 -4110 2036 675 25751 31 3 19 chrX 89462394 89466295 -73133635 + L1PA3 LINE L1 2268 6155 0 2067 216 60 14 chrX 89466321 89466997 -73132933 - L1PA16 LINE L1 -691 5475 4774 2624 86 100 5 chrX 89467000 89467409 -73132521 - LTR7 LTR ERV1 -2 448 1 2334 101 53 13 chrX 89467409 89467786 -73132144 - HERVH LTR ERV1 0 7713 7322 1318 113 25 5 chrX 89467784 89467988 -73131942 - HERVH LTR ERV1 -1894 5819 5612 * 4337 143 0 3 chrX 89468003 89468667 -73131263 - HERVH LTR ERV1 -2564 5149 4488 3463 102 4 6 chrX 89468669 89469171 -73130759 - HERVH LTR ERV1 -3720 3993 3493 808 157 27 0 chrX 89469162 89469309 -73130621 - HERVH LTR ERV1 -4423 3290 3140 * 2471 157 5 11 chrX 89469303 89469742 -73130188 - HERVH LTR ERV1 -4726 2987 2552 2397 76 3 0 chrX 89669747 89670063 -72929867 + L1PA7 LINE L1 5833 6149 -5 1023 194 97 24 chrX 89670067 89670356 -72929574 + L1MA7 LINE L1 5953 6262 -29 224 98 0 24 chrX 89670384 89670425 -72929505 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 22 0 0 0 chrX 89671002 89671024 -72928906 + AT_rich Low_complexity Low_complexity 1 22 0 2243 61 4 0 chrX 89671748 89672050 -72927880 + AluY SINE Alu 1 303 0 537 168 25 17 chrX 89672247 89672366 -72927564 - L1MA9 LINE L1 -13 6299 6180 1092 229 29 0 chrX 89672368 89672612 -72927318 - L1MA9 LINE L1 -231 6081 5831 555 99 42 0 chrX 89672675 89672790 -72927140 - L1MA9 LINE L1 -796 5350 5232 1627 172 26 19 chrX 89672905 89673213 -72926717 + MER52C-int LTR ERV1 1189 1498 -5593 780 171 6 43 chrX 89673212 89673376 -72926554 + MER52C-int LTR ERV1 990 1147 -4799 * 2272 183 56 31 chrX 89673378 89674031 -72925899 + MER52C-int LTR ERV1 1431 1992 -3594 * 4494 152 52 30 chrX 89674023 89675624 -72924306 + MER52C-int LTR ERV1 592 4514 -3023 1310 118 9 62 chrX 89675626 89675837 -72924093 + MER52C-int LTR ERV1 6892 7091 0 3496 206 30 15 chrX 89675837 89676571 -72923359 + MER52C LTR ERV1 1 745 -533 32 57 0 0 chrX 89676771 89676824 -72923106 + AT_rich Low_complexity Low_complexity 1 53 0 2071 113 3 0 chrX 89677826 89678138 -72921792 + AluSq SINE Alu 1 313 0 680 333 44 27 chrX 89678587 89678884 -72921046 - MLT1J2 LTR MaLR -148 302 1 637 321 112 36 chrX 89680443 89680916 -72919014 - LTR33 LTR ERVL -11 510 2 469 187 110 35 chrX 89680978 89681124 -72918806 + L1MB8 LINE L1 6027 6184 0 2045 139 3 3 chrX 89681236 89681545 -72918385 - AluSx SINE Alu -3 309 1 5725 153 14 25 chrX 89681581 89682775 -72917155 + L1MA7 LINE L1 4970 6151 -140 1404 205 6 60 chrX 89682775 89683092 -72916838 + AluJo SINE Alu 1 300 -2 5725 153 14 25 chrX 89683092 89683231 -72916699 + L1MA7 LINE L1 6151 6290 -1 8390 153 10 133 chrX 89684743 89686562 -72913368 - L1P1 LINE L1 -374 5781 4484 1994 129 27 7 chrX 89686562 89686857 -72913073 - AluSg SINE Alu -9 301 1 8390 153 10 133 chrX 89686857 89687985 -72911945 - L1P1 LINE L1 -1671 4484 3219 812 215 14 5 chrX 89687982 89688191 -72911739 + L1 LINE L1 2968 3178 -2968 * 340 378 25 25 chrX 89688191 89688387 -72911543 - L3 LINE CR1 -1021 556 361 21 36 0 0 chrX 89689258 89689286 -72910644 + AT_rich Low_complexity Low_complexity 1 28 0 395 333 112 61 chrX 89689626 89690525 -72909405 - L2 LINE L2 -181 3091 2147 2977 145 21 100 chrX 89691444 89692112 -72907818 + MER52C LTR ERV1 664 1278 0 2072 117 39 0 chrX 89692351 89692633 -72907297 + AluSc SINE Alu 1 293 -16 405 238 50 0 chrX 89692759 89692860 -72907070 - FRAM SINE Alu -8 168 63 264 235 44 52 chrX 89693513 89693649 -72906281 + L1M4 LINE L1 2182 2316 -3830 256 250 34 11 chrX 89693670 89693758 -72906172 + L1M4 LINE L1 2415 2504 -3642 228 135 0 0 chrX 89693803 89693840 -72906090 + (TA)n Simple_repeat Simple_repeat 2 38 0 2613 276 72 28 chrX 89693855 89694907 -72905023 + L1M4 LINE L1 2667 3796 -2350 2115 247 87 18 chrX 89694907 89695462 -72904468 - MLT1E LTR MaLR 0 593 1 2613 276 72 28 chrX 89695462 89695790 -72904140 + L1M4 LINE L1 3796 4108 -2038 1078 244 60 39 chrX 89695814 89696264 -72903666 - MLT1F1 LTR MaLR -27 540 3 275 143 63 16 chrX 89696266 89696329 -72903601 + L1M4 LINE L1 4114 4179 -1967 641 286 15 5 chrX 89696331 89696534 -72903396 + L1ME2 LINE L1 5951 6155 -9 468 284 70 76 chrX 89696975 89697489 -72902441 - L1M4 LINE L1 -2966 3180 2670 354 252 59 0 chrX 89697490 89697609 -72902321 - L1M4 LINE L1 -445 5739 5614 1483 150 0 13 chrX 89697782 89698009 -72901921 - AluSg/x SINE Alu -18 292 69 2197 38 0 0 chrX 89698022 89698285 -72901645 - L1PA7 LINE L1 -149 6005 5743 1824 117 0 0 chrX 89698285 89698568 -72901362 + L1P LINE L1 4587 4869 -1277 33 25 0 0 chrX 89698772 89698812 -72901118 + AT_rich Low_complexity Low_complexity 1 40 0 665 193 166 0 chrX 89698933 89699120 -72900810 - L1MC4 LINE L1 -267 7775 7558 * 848 310 90 29 chrX 89699094 89700257 -72899673 - L1M4 LINE L1 -1098 5048 3815 599 168 8 16 chrX 89700245 89700370 -72899560 + L1PB1 LINE L1 82 205 -6658 * 2838 151 8 20 chrX 89700363 89700861 -72899069 + L1PB1 LINE L1 634 1125 -5738 6611 40 0 0 chrX 89700862 89701657 -72898273 - L1PA4 LINE L1 0 6155 5361 * 7634 32 0 0 chrX 89701656 89702580 -72897350 + L1P LINE L1 4357 5280 -866 * 13284 189 36 21 chrX 89702572 89704369 -72895561 + L1PB1 LINE L1 1116 2883 -3984 189 0 0 0 chrX 89704369 89704390 -72895540 + (TA)n Simple_repeat Simple_repeat 1 21 0 13284 189 36 21 chrX 89704390 89708105 -72891825 + L1PB1 LINE L1 2883 6866 -1 259 174 0 0 chrX 89708120 89708166 -72891764 + MER63 DNA MER1_type 947 992 -68 1004 313 27 12 chrX 89708445 89708780 -72891150 - MLT1J LTR MaLR -171 340 1 358 255 28 9 chrX 89708781 89708887 -72891043 - L1 LINE L1 -2451 3695 3588 390 223 85 23 chrX 89709048 89709178 -72890752 + MIR SINE MIR 125 262 0 675 319 23 5 chrX 89709999 89710215 -72889715 + MIR SINE MIR 30 249 -13 210 427 10 0 chrX 89710247 89710350 -72889580 - L2 LINE L2 -6 3266 3163 180 111 0 0 chrX 89710355 89710382 -72889548 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1244 236 64 17 chrX 89710615 89710959 -72888971 + MLT1A1 LTR MaLR 6 365 0 25 51 0 0 chrX 89711154 89711193 -72888737 + AT_rich Low_complexity Low_complexity 1 39 0 210 297 31 47 chrX 89711331 89711459 -72888471 - MIR SINE MIR 0 262 137 10518 204 28 8 chrX 89712235 89712615 -72887315 - L1M1 LINE L1 -743 6822 6451 2021 139 45 31 chrX 89712615 89712974 -72886956 - THE1B LTR MaLR 0 364 1 10772 119 16 2 chrX 89712974 89714532 -72885398 - THE1B-int LTR MaLR 0 1580 1 1974 123 71 31 chrX 89714532 89714882 -72885048 - THE1B LTR MaLR 0 364 1 10518 204 28 8 chrX 89714882 89717120 -72882810 - L1M1 LINE L1 -1113 6452 4245 4419 255 130 5 chrX 89717114 89719370 -72880560 - L1M1 LINE L1 -4584 2981 13 * 741 301 122 20 chrX 89719371 89719845 -72880085 + L2 LINE L2 2656 3171 -142 21 0 0 0 chrX 89719846 89719867 -72880063 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 89719900 89719930 -72880000 + AT_rich Low_complexity Low_complexity 1 30 0 932 41 74 0 chrX 89720000 89720122 -72879808 + L1PA8 LINE L1 5723 5853 -319 667 213 0 73 chrX 89720121 89720271 -72879659 - L1M1 LINE L1 -5663 1902 1764 * 6390 198 28 16 chrX 89720281 89721545 -72878385 - L1M1 LINE L1 -6286 1279 1 326 330 116 14 chrX 89723175 89723606 -72876324 - L1M4 LINE L1 -2590 3556 3082 837 204 6 0 chrX 89723686 89723848 -72876082 - MER34B LTR ERV1 -29 536 374 728 149 8 0 chrX 89723911 89724032 -72875898 - L1PA10 LINE L1 -5 6163 6042 357 257 115 9 chrX 89725842 89725955 -72873975 - MIR SINE MIR -91 171 47 250 348 20 100 chrX 89726198 89726448 -72873482 - L2 LINE L2 -90 3182 2953 1602 142 100 0 chrX 89726703 89726963 -72872967 - AluSg SINE Alu -24 286 1 648 224 0 0 chrX 89727606 89727731 -72872199 + FLAM_A SINE Alu 1 125 -8 556 289 58 14 chrX 89727916 89728262 -72871668 - L1ME LINE L1 -299 5891 5397 1743 243 96 48 chrX 89729140 89729970 -72869960 - L1ME LINE L1 -4924 1472 603 270 29 0 0 chrX 89729970 89730004 -72869926 - L1P LINE L1 -809 5352 5319 4550 108 41 3 chrX 89730006 89730690 -72869240 + L1PA14 LINE L1 5450 6159 -2 8604 195 40 39 chrX 89730690 89733438 -72866492 + L1MA6 LINE L1 3263 6009 -291 262 271 0 0 chrX 89733565 89733650 -72866280 + L1ME4a LINE L1 4962 5046 -1100 565 293 40 77 chrX 89733937 89734249 -72865681 + L1ME4a LINE L1 5415 5708 -413 2209 79 0 0 chrX 89734249 89734528 -72865402 + AluSx SINE Alu 2 280 -32 565 293 40 77 chrX 89734528 89734645 -72865285 + L1ME4a LINE L1 5708 5828 -293 189 107 0 0 chrX 89736938 89736966 -72862964 + (CAT)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chrX 89737382 89737413 -72862517 + AT_rich Low_complexity Low_complexity 1 31 0 809 230 0 72 chrX 89737566 89737801 -72862129 - MER20 DNA MER1_type 0 219 2 364 278 214 0 chrX 89737851 89737971 -72861959 + MIR SINE MIR 2 148 -114 914 283 44 0 chrX 89737971 89738222 -72861708 + MIR SINE MIR 1 262 0 320 332 48 37 chrX 89738509 89738696 -72861234 + MIR SINE MIR 32 220 -42 1951 123 0 4 chrX 89738723 89738999 -72860931 + AluSc SINE Alu 1 275 -34 1689 212 3 3 chrX 89739099 89739439 -72860491 + HSMAR1 DNA Mariner 221 560 -727 24 0 0 0 chrX 89739452 89739476 -72860454 + AT_rich Low_complexity Low_complexity 1 24 0 4367 128 3 3 chrX 89739494 89740126 -72859804 + HSMAR1 DNA Mariner 560 1191 -96 1944 164 75 43 chrX 89740142 89740557 -72859373 + MSTC LTR MaLR 1 428 0 26 0 0 0 chrX 89742136 89742162 -72857768 + AT_rich Low_complexity Low_complexity 1 26 0 2417 147 49 2 chrX 89742460 89742869 -72857061 + MSTA LTR MaLR 1 428 0 22 0 0 0 chrX 89743640 89743662 -72856268 + AT_rich Low_complexity Low_complexity 1 22 0 269 26 26 0 chrX 89743845 89743883 -72856047 + (CA)n Simple_repeat Simple_repeat 2 40 0 1908 180 9 3 chrX 89745186 89745531 -72854399 + MER7A DNA MER2_type 2 346 0 964 309 9 0 chrX 89745715 89745948 -72853982 + MIR SINE MIR 7 241 -21 1677 181 13 13 chrX 89746390 89746419 -72853511 - MLT2B3 LTR ERVL -10 544 516 586 0 13 13 chrX 89746419 89746494 -72853436 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 2067 93 0 24 chrX 89746499 89746812 -72853118 - AluY SINE Alu 0 306 1 1677 181 13 13 chrX 89746812 89747084 -72852846 - MLT2B3 LTR ERVL -41 513 236 459 223 0 0 chrX 89747084 89747178 -72852752 - MLT2B3 LTR ERVL -442 112 19 * 659 214 42 9 chrX 89747175 89747304 -72852626 - MSTB LTR MaLR -79 347 195 23 0 0 0 chrX 89747656 89747679 -72852251 + AT_rich Low_complexity Low_complexity 1 23 0 18030 169 40 14 chrX 89747679 89752155 -72847775 - L1MA3 LINE L1 0 7724 18 1269 226 69 17 chrX 89752277 89752626 -72847304 - L1MC1 LINE L1 0 6333 5967 25 65 0 0 chrX 89753414 89753460 -72846470 + AT_rich Low_complexity Low_complexity 1 46 0 26 55 0 41 chrX 89753868 89753941 -72845989 + AT_rich Low_complexity Low_complexity 1 70 0 25 0 0 0 chrX 89754235 89754260 -72845670 + AT_rich Low_complexity Low_complexity 1 25 0 335 261 46 54 chrX 89754315 89754445 -72845485 + HAL1b LINE L1 417 545 -803 385 263 86 57 chrX 89755037 89755246 -72844684 + L1ME LINE L1 2143 2357 -3789 1596 171 18 25 chrX 89755573 89755691 -72844239 - AluJb SINE Alu -26 286 169 4562 67 5 0 chrX 89755691 89756275 -72843655 + LTR14C LTR ERVK 1 587 0 1596 171 18 25 chrX 89756275 89756442 -72843488 - AluJb SINE Alu -143 169 3 234 337 12 0 chrX 89756991 89757077 -72842853 - L1ME LINE L1 -519 5602 5516 33 43 0 0 chrX 89757305 89757352 -72842578 + AT_rich Low_complexity Low_complexity 1 47 0 301 340 78 5 chrX 89757353 89757544 -72842386 + L1ME LINE L1 3877 4081 -2065 911 247 107 33 chrX 89757554 89757919 -72842011 - L1MC4 LINE L1 -168 7874 7483 24 0 0 0 chrX 89758478 89758502 -72841428 + AT_rich Low_complexity Low_complexity 1 24 0 413 259 83 0 chrX 89758535 89758643 -72841287 + L2 LINE L2 3187 3303 -10 309 335 82 54 chrX 89758651 89758967 -72840963 + L1ME LINE L1 4693 5017 -1129 342 330 52 47 chrX 89759307 89759676 -72840254 + L1ME LINE L1 5453 5824 -297 201 239 0 0 chrX 89759753 89759799 -72840131 + (TG)n Simple_repeat Simple_repeat 1 46 0 771 218 150 96 chrX 89760924 89761265 -72838665 - MER65B LTR ERV1 -11 520 80 2110 153 22 8 chrX 89761265 89761624 -72838306 + THE1B LTR MaLR 1 364 0 771 218 150 96 chrX 89761624 89761708 -72838222 - MER65B LTR ERV1 -451 80 2 869 328 34 18 chrX 89761842 89762447 -72837483 - MER65B-int LTR ERV1 -147 6685 4212 288 291 87 0 chrX 89763688 89763791 -72836139 - MER110-int LTR ERV1 -2089 2558 2447 378 0 0 0 chrX 89763821 89763863 -72836067 + (TG)n Simple_repeat Simple_repeat 1 42 0 300 103 0 0 chrX 89763863 89763902 -72836028 - Alu SINE Alu -23 279 241 778 78 0 0 chrX 89765182 89765284 -72834646 - THE1B LTR MaLR 0 364 263 430 363 0 12 chrX 89765541 89765712 -72834218 + HERV16 LTR ERVL 1284 1452 -3544 * 1457 349 63 11 chrX 89765702 89766496 -72833434 + HERV16 LTR ERVL 4075 4894 -760 1333 122 50 14 chrX 89766502 89766724 -72833206 + MER30 DNA MER1_type 1 230 0 269 281 16 31 chrX 89767473 89767601 -72832329 + LTR16C LTR ERVL 355 480 -11 1226 287 24 88 chrX 89767604 89768366 -72831564 + L1ME3A LINE L1 5345 6057 -113 1749 153 7 3 chrX 89768816 89769098 -72830832 + AluJb SINE Alu 3 286 -21 198 0 0 0 chrX 89769098 89769120 -72830810 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2158 180 13 3 chrX 89769589 89769973 -72829957 + MLT1B LTR MaLR 1 388 -2 21 0 0 0 chrX 89770428 89770449 -72829481 + AT_rich Low_complexity Low_complexity 1 21 0 1647 205 46 3 chrX 89771038 89771428 -72828502 - L1MA9 LINE L1 -38 6274 5868 408 311 44 0 chrX 89771427 89771697 -72828233 - L1M4c LINE L1 -4024 2360 2079 * 23 0 0 0 chrX 89771721 89771744 -72828186 + AT_rich Low_complexity Low_complexity 1 23 0 * 414 151 0 14 chrX 89771743 89771816 -72828114 + MLT2B3 LTR ERVL 1 72 -482 1678 185 27 84 chrX 89771829 89772235 -72827695 + MSTD LTR MaLR 1 383 -13 259 105 0 0 chrX 89772245 89772283 -72827647 + MSTD LTR MaLR 340 377 -19 385 95 79 0 chrX 89772285 89772348 -72827582 + MSTD LTR MaLR 327 394 -2 2087 223 45 36 chrX 89772350 89772727 -72827203 + MLT2B3 LTR ERVL 80 452 -102 1568 219 50 88 chrX 89772727 89773363 -72826567 - LTR9 LTR ERV1 0 612 1 2087 223 45 36 chrX 89773363 89773404 -72826526 + MLT2B3 LTR ERVL 452 491 -63 404 77 15 0 chrX 89773404 89773469 -72826461 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 2087 223 45 36 chrX 89773469 89773520 -72826410 + MLT2B3 LTR ERVL 491 554 0 10276 194 53 6 chrX 89773521 89775454 -72824476 + ERVL-B3 LTR ERVL 2 2025 -3739 276 379 0 7 chrX 89775461 89775614 -72824316 - L1M4c LINE L1 -5731 572 421 532 281 35 26 chrX 89775901 89776132 -72823798 + L1M4 LINE L1 3625 3857 -2289 309 333 83 0 chrX 89776143 89776287 -72823643 + L1M4 LINE L1 3983 4138 -2008 3402 196 74 42 chrX 89776300 89777378 -72822552 + L1MA1 LINE L1 5181 6298 -4 2516 161 17 27 chrX 89777388 89777915 -72822015 + L1MA7 LINE L1 5770 6291 0 320 306 14 14 chrX 89777996 89778140 -72821790 - L1ME LINE L1 -280 5841 5698 284 301 60 42 chrX 89778147 89778529 -72821401 + L1M4 LINE L1 4156 4544 -1602 30 27 0 0 chrX 89778765 89778802 -72821128 + AT_rich Low_complexity Low_complexity 1 37 0 460 259 18 0 chrX 89779062 89779174 -72820756 - MER94 DNA DNA -15 119 6 225 0 0 0 chrX 89779974 89779999 -72819931 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 288 0 0 0 chrX 89779998 89780030 -72819900 + (TG)n Simple_repeat Simple_repeat 2 33 0 213 196 22 0 chrX 89780941 89780987 -72818943 - MIR SINE MIR -120 142 96 379 309 83 37 chrX 89781103 89781452 -72818478 + L1M4 LINE L1 3086 3450 -2696 30 0 0 0 chrX 89782265 89782295 -72817635 + AT_rich Low_complexity Low_complexity 1 30 0 612 301 137 41 chrX 89782354 89782958 -72816972 + L1M4 LINE L1 2791 3452 -2694 3401 42 12 0 chrX 89782990 89783414 -72816516 + L1PA3 LINE L1 5724 6152 -3 272 350 38 12 chrX 89783601 89783761 -72816169 + MLT1I LTR MaLR 114 277 -132 2151 104 0 7 chrX 89783856 89784164 -72815766 + AluSc SINE Alu 1 306 -3 485 282 94 60 chrX 89784169 89784701 -72815229 - L1M4 LINE L1 -3151 2995 2446 12705 215 32 21 chrX 89784752 89785056 -72814874 - L1PB2 LINE L1 -1 6852 6553 1772 132 29 65 chrX 89785056 89785366 -72814564 - AluSx SINE Alu -13 299 1 12705 215 32 21 chrX 89785366 89786395 -72813535 - L1PB2 LINE L1 -300 6553 5537 4973 126 42 0 chrX 89786395 89787157 -72812773 - LTR25 LTR ERV1 0 794 1 12705 215 32 21 chrX 89787157 89790123 -72809807 - L1PB2 LINE L1 -1316 5537 2411 1775 200 91 28 chrX 89790123 89790584 -72809346 - LTR2B LTR ERV1 0 490 1 12705 215 32 21 chrX 89790584 89790625 -72809305 - L1PB2 LINE L1 -4442 2411 2372 15429 103 12 3 chrX 89790625 89792881 -72807049 - Harlequin LTR ERV1 -41 6855 4713 2119 205 8 28 chrX 89792900 89793395 -72806535 - L1PB2 LINE L1 -5219 1630 646 4169 137 10 39 chrX 89793395 89794219 -72805711 - pTR5 LTR ERV1 -896 1542 743 763 161 7 0 chrX 89794219 89794356 -72805574 - L1MA4 LINE L1 -139 6161 6024 1210 208 12 8 chrX 89794356 89794596 -72805334 + MLT1B LTR MaLR 150 390 0 21 0 0 0 chrX 89794658 89794679 -72805251 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 89794764 89794794 -72805136 + AT_rich Low_complexity Low_complexity 1 30 0 276 123 39 45 chrX 89794794 89794948 -72804982 + A-rich Low_complexity Low_complexity 4 156 0 31 58 0 0 chrX 89794948 89795000 -72804930 + AT_rich Low_complexity Low_complexity 1 52 0 1395 129 5 5 chrX 89795408 89795617 -72804313 - AluSq SINE Alu -15 298 90 293 333 29 43 chrX 89795749 89795887 -72804043 + L2 LINE L2 3177 3312 -1 1953 233 99 6 chrX 89797624 89798140 -72801790 + MLT1F1 LTR MaLR 1 564 -3 377 205 62 18 chrX 89798376 89798488 -72801442 + L1ME4a LINE L1 5983 6099 -22 207 227 0 0 chrX 89798489 89798533 -72801397 - L2 LINE L2 -8 3305 3262 750 304 123 19 chrX 89798559 89799007 -72800923 - L2 LINE L2 -44 3269 2768 3740 160 22 0 chrX 89799786 89800479 -72799451 + L1MA4 LINE L1 5589 6296 -4 191 394 19 19 chrX 89800659 89800814 -72799116 + L2 LINE L2 1153 1307 -2007 256 305 110 24 chrX 89800883 89800965 -72798965 - L2 LINE L2 -16 3256 3168 1535 214 36 36 chrX 89800980 89801456 -72798474 - Charlie1 DNA MER1_type -1 2760 2285 232 231 19 0 chrX 89801630 89801682 -72798248 + C-rich Low_complexity Low_complexity 5 57 0 14648 74 5 2 chrX 89803711 89806174 -72793756 - L1PA7 LINE L1 -310 5844 3378 794 234 33 44 chrX 89806191 89806465 -72793465 - Charlie7 DNA MER1_type -1402 1210 940 322 259 76 57 chrX 89806773 89806931 -72792999 - MLT1J LTR MaLR -117 394 234 428 288 83 43 chrX 89806956 89807425 -72792505 - L1M4 LINE L1 -2664 3482 2995 * 3583 92 0 17 chrX 89807424 89807967 -72791963 - L1P LINE L1 -2753 3393 2860 6130 119 1 5 chrX 89807972 89808865 -72791065 + L1P3 LINE L1 5 894 -5567 1250 262 30 2 chrX 89808901 89809302 -72790628 - L1 LINE L1 -2365 5200 4789 265 292 88 18 chrX 89809295 89809408 -72790522 + L1 LINE L1 5223 5343 -2222 * 4430 135 24 0 chrX 89809455 89810174 -72789756 - L1MA1 LINE L1 -9 6293 5558 965 131 131 25 chrX 89810179 89810378 -72789552 + MSTA LTR MaLR 209 428 0 5923 238 31 16 chrX 89810378 89811737 -72788193 - L1 LINE L1 -6177 1388 10 4059 223 25 12 chrX 89811735 89813811 -72786119 + L1MB4 LINE L1 3913 6180 0 * 1605 239 94 42 chrX 89814294 89814887 -72785043 - MLT1E2 LTR MaLR -2 624 1 186 118 0 0 chrX 89814952 89814986 -72784944 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 248 220 80 0 chrX 89815075 89815125 -72784805 + L2 LINE L2 3219 3272 0 243 0 0 0 chrX 89816794 89816821 -72783109 + (TG)n Simple_repeat Simple_repeat 2 28 0 719 283 155 27 chrX 89816852 89817227 -72782703 - L2 LINE L2 -7 3306 2884 452 296 26 64 chrX 89817652 89817916 -72782014 - MLT1K LTR MaLR -20 568 315 203 250 138 12 chrX 89817960 89818040 -72781890 + MER91C DNA MER1_type 35 124 -16 1058 349 94 52 chrX 89818463 89819083 -72780847 + L2 LINE L2 1519 2111 -1203 2194 104 13 3 chrX 89819083 89819390 -72780540 - AluSp SINE Alu -3 310 1 1058 349 94 52 chrX 89819390 89820146 -72779784 + L2 LINE L2 2111 2954 -360 221 300 50 75 chrX 89820741 89820861 -72779069 + L2 LINE L2 3196 3312 -1 21 57 0 0 chrX 89821212 89821247 -72778683 + AT_rich Low_complexity Low_complexity 1 35 0 321 230 30 11 chrX 89822044 89822161 -72777769 - MLT1H1 LTR MaLR 0 576 428 743 301 28 19 chrX 89822379 89822665 -72777265 - MLT1H1 LTR MaLR -294 296 11 22 0 0 0 chrX 89823491 89823513 -72776417 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 89825082 89825103 -72774827 + AT_rich Low_complexity Low_complexity 1 21 0 2072 113 0 3 chrX 89826785 89827068 -72772862 + AluSx SINE Alu 1 282 -30 1947 242 82 34 chrX 89827397 89828109 -72771821 + L1ME2 LINE L1 5418 6163 -1 22 0 0 0 chrX 89828117 89828139 -72771791 + AT_rich Low_complexity Low_complexity 1 22 0 4395 154 19 3 chrX 89828160 89828905 -72771025 + Tigger2 DNA MER2_type 1 757 -1961 1152 176 59 8 chrX 89828954 89829193 -72770737 + Tigger2 DNA MER2_type 2461 2711 -7 4325 184 29 1 chrX 89829280 89830147 -72769783 - L1MB8 LINE L1 -3 6175 5285 1964 277 41 19 chrX 89830153 89830353 -72769577 - L1M4b LINE L1 -6331 528 334 1149 250 53 37 chrX 89830353 89830809 -72769121 - MLT1C LTR MaLR 0 467 5 1964 277 41 19 chrX 89830809 89831124 -72768806 - L1M4b LINE L1 -6525 334 2 278 371 20 0 chrX 89831150 89831301 -72768629 - MIR SINE MIR -30 232 79 594 136 10 0 chrX 89831370 89831473 -72768457 - L1MA2 LINE L1 0 7723 7620 5200 146 14 6 chrX 89831573 89833232 -72766698 - L1MA2 LINE L1 -271 7452 5774 315 0 0 0 chrX 89833233 89833268 -72766662 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1843 117 0 4 chrX 89833273 89833529 -72766401 - AluSq SINE Alu -20 293 39 233 196 0 0 chrX 89833529 89833580 -72766350 - L1MA2 LINE L1 -3325 4240 4190 * 13307 196 42 28 chrX 89833575 89836408 -72763522 - L1MA2 LINE L1 -4671 2894 22 1463 204 28 11 chrX 89836410 89836695 -72763235 - AluJo SINE Alu -22 290 1 2135 174 69 42 chrX 89837066 89837572 -72762358 - MLT2B1 LTR ERVL 0 520 1 284 241 23 0 chrX 89837666 89837753 -72762177 - L1MB2 LINE L1 -864 5282 5194 3497 215 74 2 chrX 89837754 89838574 -72761356 + L1MB2 LINE L1 5285 6163 -8 563 273 61 10 chrX 89838586 89838784 -72761146 + L1M4 LINE L1 4194 4401 -1745 * 2000 212 107 12 chrX 89838776 89839484 -72760446 - L1MCb LINE L1 -4794 1770 946 236 190 69 0 chrX 89839588 89839646 -72760284 - L1PA14 LINE L1 -5 6156 6095 2666 246 86 32 chrX 89839649 89840549 -72759381 - L1MCb LINE L1 -5096 949 2 21 0 0 0 chrX 89841328 89841349 -72758581 + AT_rich Low_complexity Low_complexity 1 21 0 673 204 38 48 chrX 89841758 89841944 -72757986 - AluSg SINE Alu -126 184 1 25 51 0 0 chrX 89841947 89841986 -72757944 + AT_rich Low_complexity Low_complexity 1 39 0 314 274 174 0 chrX 89842003 89842215 -72757715 - L1M4 LINE L1 -748 5398 5150 457 308 80 48 chrX 89842453 89843225 -72756705 - L1M4 LINE L1 -1300 4846 4050 346 211 28 0 chrX 89843238 89843309 -72756621 + MIR SINE MIR 188 260 -2 21 57 0 0 chrX 89843452 89843487 -72756443 + AT_rich Low_complexity Low_complexity 1 35 0 2188 284 103 30 chrX 89843622 89844604 -72755326 + L2 LINE L2 2014 3079 -234 1654 102 12 8 chrX 89844604 89844850 -72755080 + AluSq SINE Alu 1 247 -66 332 276 122 50 chrX 89844975 89845396 -72754534 + L1MEc LINE L1 2152 2556 -3659 21 36 0 0 chrX 89845499 89845527 -72754403 + AT_rich Low_complexity Low_complexity 1 28 0 2588 181 45 81 chrX 89846152 89846869 -72753061 + LTR8 LTR ERV1 1 691 0 2740 180 37 23 chrX 89847348 89847919 -72752011 + L1MA7 LINE L1 5536 6114 -177 2031 123 18 60 chrX 89847934 89848317 -72751613 - L1PB1 LINE L1 -3 6148 5782 323 92 0 83 chrX 89848317 89848437 -72751493 + (TA)n Simple_repeat Simple_repeat 1 110 0 3562 103 4 26 chrX 89848437 89849055 -72750875 - L1PB1 LINE L1 -360 5791 5187 820 201 0 3 chrX 89849057 89849239 -72750691 + L1MA7 LINE L1 6101 6287 -10 21 0 0 0 chrX 89849239 89849260 -72750670 + AT_rich Low_complexity Low_complexity 1 21 0 1820 148 36 7 chrX 89849260 89849563 -72750367 + AluSx SINE Alu 1 312 0 5266 193 20 12 chrX 89850198 89852222 -72747708 + L1PA16 LINE L1 4127 6166 0 1440 168 56 16 chrX 89852369 89852672 -72747258 + L1MA8 LINE L1 5938 6252 -39 296 119 17 0 chrX 89852691 89852750 -72747180 + L1MA8 LINE L1 6232 6291 0 195 42 0 0 chrX 89854386 89854410 -72745520 + (TC)n Simple_repeat Simple_repeat 1 24 0 249 57 0 0 chrX 89854440 89854475 -72745455 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 193 400 0 19 chrX 89854574 89854679 -72745251 - L2 LINE L2 -171 3101 2999 1634 124 12 8 chrX 89854679 89854936 -72744994 - L1P4 LINE L1 -570 5591 5334 1699 116 72 7 chrX 89854936 89855225 -72744705 + L1PA13 LINE L1 5851 6161 -2 399 229 0 83 chrX 89905241 89905337 -72694593 + Tigger5 DNA MER2_type 107 194 -2129 * 464 84 70 0 chrX 89905336 89905407 -72694523 + Tigger5 DNA MER2_type 2169 2244 -79 322 234 0 6 chrX 89905654 89905792 -72694138 + MER3 DNA MER1_type 1 209 0 354 320 10 0 chrX 89907085 89907182 -72692748 + MIR SINE MIR 86 183 -79 245 345 12 0 chrX 89907244 89907328 -72692602 + L3 LINE CR1 1083 1167 -410 394 333 9 18 chrX 89907497 89907611 -72692319 + MIR SINE MIR 16 128 -80 1739 151 14 11 chrX 89908197 89908496 -72691434 + AluSx SINE Alu 3 302 0 1529 261 14 0 chrX 89909246 89909606 -72690324 + MLT1A1 LTR MaLR 1 365 0 646 233 0 0 chrX 89910050 89910183 -72689747 + L1PB4 LINE L1 6022 6154 -2 300 324 28 21 chrX 89910212 89910354 -72689576 - MIR SINE MIR 0 262 120 8786 178 21 16 chrX 89911369 89913707 -72686223 + L1PB4 LINE L1 3440 5780 -376 381 22 0 0 chrX 89913707 89913753 -72686177 + (TG)n Simple_repeat Simple_repeat 2 47 0 8786 178 21 16 chrX 89913753 89914130 -72685800 + L1PB4 LINE L1 5780 6154 -2 258 240 13 13 chrX 89914162 89914237 -72685693 + HAL1b LINE L1 1230 1304 -44 1344 84 0 0 chrX 89914851 89915029 -72684901 - L1M1 LINE L1 -746 5556 5379 * 3268 112 112 30 chrX 89915026 89915596 -72684334 - THE1B-int LTR MaLR -963 617 1 2486 111 11 6 chrX 89915596 89915958 -72683972 - THE1B LTR MaLR 0 364 1 1014 221 4 12 chrX 89915958 89916202 -72683728 - L1 LINE L1 -2022 5543 5302 213 338 14 0 chrX 89916805 89916875 -72683055 + MIR3 SINE MIR 91 161 -47 196 281 125 42 chrX 89916875 89916971 -72682959 + MER5B DNA MER1_type 2 105 -73 1118 149 21 16 chrX 89916983 89917171 -72682759 - MER5A DNA MER1_type 0 189 1 252 0 0 0 chrX 89917190 89917204 -72682726 + (TC)n Simple_repeat Simple_repeat 1 42 0 252 0 0 0 chrX 89917204 89917232 -72682698 + (TC)n Simple_repeat Simple_repeat 1 28 0 204 40 0 0 chrX 89918306 89918331 -72681599 + (T)n Simple_repeat Simple_repeat 1 25 0 6627 217 43 8 chrX 89919009 89919355 -72680575 - L1 LINE L1 -2250 5315 4983 243 0 0 0 chrX 89919355 89919382 -72680548 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6627 217 43 8 chrX 89919382 89920693 -72679237 - L1 LINE L1 -2582 4983 3600 5557 152 32 12 chrX 89920702 89921811 -72678119 - L1 LINE L1 -4098 3467 2337 * 6428 81 0 7 chrX 89921805 89922474 -72677456 + L1PA8 LINE L1 4820 5476 -696 2295 76 13 23 chrX 89922474 89922775 -72677155 + AluSc SINE Alu 1 298 -11 6428 81 0 7 chrX 89922775 89923453 -72676477 + L1PA8 LINE L1 5476 6158 -14 10611 205 35 13 chrX 89923461 89925759 -72674171 - L1 LINE L1 -5205 2360 13 317 250 0 13 chrX 89925760 89925836 -72674094 + MER45 DNA AcHobo 1507 1581 0 24 85 0 0 chrX 89925878 89925937 -72673993 + AT_rich Low_complexity Low_complexity 1 59 0 2339 107 0 3 chrX 89926877 89927187 -72672743 + AluSg SINE Alu 1 309 -1 23 0 0 0 chrX 89927264 89927287 -72672643 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chrX 89927612 89927642 -72672288 + AT_rich Low_complexity Low_complexity 1 30 0 226 191 15 15 chrX 89928863 89928931 -72670999 + (TA)n Simple_repeat Simple_repeat 1 68 0 414 317 80 41 chrX 89929184 89929547 -72670383 - L1M4 LINE L1 -1234 4912 4536 2394 170 5 37 chrX 89929658 89930093 -72669837 + MSTB LTR MaLR 6 426 0 6461 224 63 8 chrX 89930097 89931658 -72668272 + MSTB-int LTR MaLR 5 1651 0 2288 184 19 7 chrX 89931660 89932079 -72667851 + MSTB LTR MaLR 3 426 0 24 91 0 0 chrX 89932308 89932374 -72667556 + AT_rich Low_complexity Low_complexity 1 66 0 2456 131 14 0 chrX 89932462 89932821 -72667109 - THE1B LTR MaLR 0 364 1 10125 123 30 5 chrX 89932821 89934363 -72665567 - THE1B-int LTR MaLR 0 1580 1 2442 135 3 0 chrX 89934363 89934726 -72665204 - THE1B LTR MaLR 0 364 1 522 278 141 34 chrX 89935070 89935304 -72664626 - MIR SINE MIR -2 260 2 752 202 85 38 chrX 89936143 89936460 -72663470 + MER33 DNA MER1_type 1 324 0 288 0 0 0 chrX 89936470 89936502 -72663428 + (CA)n Simple_repeat Simple_repeat 2 33 0 340 275 96 56 chrX 89937878 89938129 -72661801 + MLT1L LTR MaLR 348 608 -7 844 122 144 6 chrX 89938131 89938312 -72661618 - L1MA4A LINE L1 -117 6186 5981 490 130 56 19 chrX 89938312 89938420 -72661510 + L1MA4A LINE L1 6190 6301 -2 28 29 0 0 chrX 89938470 89938505 -72661425 + AT_rich Low_complexity Low_complexity 1 35 0 1418 165 35 9 chrX 89939518 89939833 -72660097 + MER33 DNA MER1_type 1 323 -1 933 113 0 35 chrX 89940205 89940347 -72659583 - AluSp/q SINE Alu -1 312 176 15426 172 10 7 chrX 89940608 89943387 -72656543 + L1M1 LINE L1 13 2799 -4766 14918 184 35 9 chrX 89943380 89946649 -72653281 + L1M1 LINE L1 532 3885 -3680 * 1218 188 29 25 chrX 89946650 89946739 -72653191 + AluJo SINE Alu 43 130 -182 603 74 0 0 chrX 89946739 89946820 -72653110 + (TA)n Simple_repeat Simple_repeat 2 82 0 1218 188 29 25 chrX 89946820 89946975 -72652955 + AluJo SINE Alu 130 288 -24 267 182 0 0 chrX 89946980 89947035 -72652895 + MER67C LTR ERV1 349 403 -307 * 567 218 146 15 chrX 89947013 89947219 -72652711 + MER67D LTR ERV1 282 514 0 383 293 0 0 chrX 89947219 89947318 -72652612 + MIR SINE MIR 159 257 -5 1784 216 107 62 chrX 89947646 89948340 -72651590 - MER50 LTR ERV1 0 734 10 1752 158 97 27 chrX 89948341 89948777 -72651153 - MER50-int LTR ERV1 -3 7202 4866 340 78 78 0 chrX 89948781 89948832 -72651098 - MER50-int LTR ERV1 -3815 3390 3336 * 524 199 27 0 chrX 89948829 89948942 -72650988 - MER50-int LTR ERV1 -3800 2887 992 * 2722 180 58 45 chrX 89948935 89950162 -72649768 - MER50-int LTR ERV1 -436 4781 389 471 169 68 8 chrX 89950149 89950267 -72649663 - MER50-int LTR ERV1 -7077 128 4 * 1491 227 105 65 chrX 89950269 89950966 -72648964 - MER50 LTR ERV1 0 734 10 190 297 16 31 chrX 89951066 89951130 -72648800 + MER5A DNA MER1_type 112 174 -15 189 229 29 71 chrX 89951150 89951220 -72648710 + MIR SINE MIR 18 84 -178 615 266 11 11 chrX 89951475 89951652 -72648278 + MER5B DNA MER1_type 2 178 0 1053 252 8 13 chrX 89953966 89954204 -72645726 - MIR SINE MIR -21 241 5 380 302 97 65 chrX 89955497 89955785 -72644145 - HAL1b LINE L1 -737 611 299 1468 66 33 14 chrX 89955785 89955996 -72643934 + L1PA7 LINE L1 5940 6154 0 380 302 97 65 chrX 89955996 89956203 -72643727 - HAL1b LINE L1 -1049 299 100 661 254 92 0 chrX 89956214 89956387 -72643543 + MIR SINE MIR 45 233 -29 24 32 0 0 chrX 89956591 89956622 -72643308 + AT_rich Low_complexity Low_complexity 1 31 0 359 267 79 20 chrX 89957385 89957486 -72642444 + L2 LINE L2 3191 3297 -16 210 71 0 0 chrX 89957489 89957517 -72642413 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2293 122 3 0 chrX 89958582 89958894 -72641036 + AluSq SINE Alu 1 313 0 1738 184 44 42 chrX 89959191 89959599 -72640331 + LTR2 LTR ERV1 41 449 0 61349 48 3 6 chrX 89959599 89967433 -72632497 + HERVE LTR ERV1 1 7812 -1 1587 213 50 37 chrX 89967522 89967926 -72632004 + LTR2 LTR ERV1 41 449 0 2031 257 159 3 chrX 89968609 89969282 -72630648 + L1MA4A LINE L1 13 790 -6059 2505 260 56 3 chrX 89969364 89970003 -72629927 + L1MA4A LINE L1 610 1282 -5567 9856 196 19 10 chrX 89970004 89971042 -72628888 + L1MA4A LINE L1 3670 4698 -2307 1814 224 33 14 chrX 89971042 89971466 -72628464 + MSTB1 LTR MaLR 1 432 0 9856 196 19 10 chrX 89971466 89972567 -72627363 + L1MA4A LINE L1 4698 5788 -1217 180 0 0 0 chrX 89972567 89972587 -72627343 + (CA)n Simple_repeat Simple_repeat 1 20 0 9856 196 19 10 chrX 89972587 89973666 -72626264 + L1MA4A LINE L1 5788 6981 -24 464 268 75 77 chrX 89973955 89974405 -72625525 - MLT1I LTR MaLR -2 425 1 520 286 49 5 chrX 89974418 89974603 -72625327 + MIR SINE MIR 67 259 -3 183 42 0 0 chrX 89975357 89975381 -72624549 + (T)n Simple_repeat Simple_repeat 1 24 0 201 308 159 28 chrX 89975439 89975621 -72624309 + L2 LINE L2 2331 2536 -778 454 345 69 14 chrX 89976717 89976992 -72622938 + L2 LINE L2 2685 2974 -340 10689 226 19 7 chrX 89977932 89981599 -72618331 - L1PA16 LINE L1 -9 6157 2445 315 0 0 0 chrX 89981599 89981634 -72618296 + (TA)n Simple_repeat Simple_repeat 2 36 0 10689 226 19 7 chrX 89981634 89981728 -72618202 - L1PA16 LINE L1 -3721 2445 2354 2388 161 26 9 chrX 89982006 89982427 -72617503 + MSTA LTR MaLR 1 428 0 21 0 0 0 chrX 89982988 89983009 -72616921 + AT_rich Low_complexity Low_complexity 1 21 0 893 293 4 16 chrX 89983349 89983602 -72616328 - MIR SINE MIR -1 261 12 372 247 0 0 chrX 89984963 89985036 -72614894 + AluJo SINE Alu 2 74 -228 3617 70 26 22 chrX 89985036 89985534 -72614396 + LTR3b LTR ERVK 1 500 0 1545 139 0 4 chrX 89985559 89985796 -72614134 + AluJo SINE Alu 68 303 -9 603 325 30 30 chrX 89985950 89986181 -72613749 - MIR SINE MIR -15 247 17 268 349 47 0 chrX 89987187 89987273 -72612657 + MIR SINE MIR 3 92 -170 19866 100 29 11 chrX 89987307 89990160 -72609770 - MER61A-int LTR ERV1 0 5217 2313 2095 83 23 60 chrX 89990154 89990505 -72609425 - MER61A-int LTR ERV1 -3162 2055 1718 * 456 66 132 13 chrX 89990499 89990575 -72609355 - MER61A-int LTR ERV1 -3722 1495 1411 * 272 72 0 130 chrX 89990612 89990681 -72609249 - MER61A-int LTR ERV1 -5244 2293 2234 * 2266 190 35 46 chrX 89990650 89991283 -72608647 - MER61A-int LTR ERV1 -4510 707 1 1758 129 69 45 chrX 89991283 89991365 -72608565 - MER61A LTR ERV1 0 343 264 2726 32 0 0 chrX 89991365 89991673 -72608257 + AluY SINE Alu 1 308 -3 1758 129 69 45 chrX 89991673 89991924 -72608006 - MER61A LTR ERV1 -79 264 2 1399 161 172 7 chrX 89991933 89992224 -72607706 - MSTA LTR MaLR -89 339 1 236 186 29 86 chrX 89992225 89992295 -72607635 + MIR SINE MIR 185 250 -12 511 204 14 14 chrX 89994075 89994222 -72605708 + L1MB8 LINE L1 6031 6177 -1 201 310 17 0 chrX 89995396 89995454 -72604476 + L3 LINE CR1 540 598 -979 1599 197 54 3 chrX 89995668 89995983 -72603947 - MER2 DNA MER2_type 0 345 15 216 0 0 0 chrX 89996177 89996201 -72603729 + (TA)n Simple_repeat Simple_repeat 2 25 0 1267 240 0 30 chrX 89996320 89996624 -72603306 + AluJo SINE Alu 1 295 -17 12106 251 31 49 chrX 89996894 90004118 -72595812 + L1PA16 LINE L1 9 7594 -10 216 158 0 0 chrX 90004251 90004289 -72595641 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 880 232 70 81 chrX 90004351 90004820 -72595110 + L1MB7 LINE L1 2487 2950 -3196 1711 85 0 0 chrX 90004826 90005049 -72594881 - L1PA8A LINE L1 -1970 4176 3954 7814 121 2 6 chrX 90005049 90007045 -72592885 + L1PA8A LINE L1 4145 6130 -1 2224 243 85 13 chrX 90007050 90007130 -72592800 + L1MB7 LINE L1 2962 3035 -3111 2188 102 14 0 chrX 90007130 90007425 -72592505 + AluSq SINE Alu 1 299 -14 2224 243 85 13 chrX 90007425 90008177 -72591753 + L1MB7 LINE L1 3035 3854 -2292 1158 225 37 48 chrX 90008223 90008597 -72591333 + L1MC2 LINE L1 4880 5249 -897 3999 174 32 14 chrX 90008608 90009475 -72590455 + L1MC2 LINE L1 5451 6333 -11 2625 244 36 17 chrX 90009480 90010312 -72589618 + L1MB7 LINE L1 3891 4738 -1408 * 3534 189 87 27 chrX 90010308 90011459 -72588471 + L1MB7 LINE L1 4945 6167 -17 22 80 0 0 chrX 90012382 90012432 -72587498 + AT_rich Low_complexity Low_complexity 1 50 0 276 238 0 0 chrX 90012596 90012659 -72587271 + CT-rich Low_complexity Low_complexity 1 63 0 219 106 21 21 chrX 90013502 90013549 -72586381 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 274 269 0 0 chrX 90014073 90014140 -72585790 + (TATG)n Simple_repeat Simple_repeat 1 67 0 189 0 0 0 chrX 90014452 90014473 -72585457 + (A)n Simple_repeat Simple_repeat 1 21 0 1445 169 60 70 chrX 90014891 90015222 -72584708 + MLT1A2 LTR MaLR 1 328 -46 529 304 95 81 chrX 90015222 90015886 -72584044 + L3 LINE CR1 902 1574 -3 345 312 104 8 chrX 90016123 90016248 -72583682 + MIR SINE MIR 20 156 -106 285 338 185 9 chrX 90016235 90016451 -72583479 - MIR SINE MIR -6 256 3 * 193 222 0 0 chrX 90016458 90016494 -72583436 + MIR SINE MIR 111 146 -62 255 61 0 0 chrX 90016830 90016863 -72583067 + (CA)n Simple_repeat Simple_repeat 1 33 0 918 255 86 53 chrX 90016894 90017112 -72582818 + L1ME4a LINE L1 5527 5736 -385 2395 83 0 0 chrX 90017112 90017414 -72582516 + AluSc SINE Alu 1 302 -7 918 255 86 53 chrX 90017414 90017704 -72582226 + L1ME4a LINE L1 5736 6052 -69 2659 60 6 6 chrX 90017713 90018064 -72581866 - L1PA8 LINE L1 -5 6167 5817 2024 174 68 32 chrX 90019504 90019947 -72579983 + LTR2B LTR ERV1 32 490 0 284 383 70 0 chrX 90020504 90020619 -72579311 + MIR3 SINE MIR 37 159 -49 861 310 34 4 chrX 90020771 90021039 -72578891 - Charlie8 DNA MER1_type -2141 276 1 306 235 78 0 chrX 90021669 90021771 -72578159 - L1MA9 LINE L1 -23 6289 6180 1782 191 32 57 chrX 90021774 90022213 -72577717 - MSTC LTR MaLR 0 428 1 250 172 31 16 chrX 90022214 90022278 -72577652 - L1MA9 LINE L1 -229 6083 6019 1862 246 6 2 chrX 90022281 90022788 -72577142 + L1PA14 LINE L1 2834 3342 -2804 24289 166 10 22 chrX 90023237 90025315 -72574615 + L1PA10 LINE L1 706 2807 -3676 2611 61 0 0 chrX 90025315 90025626 -72574304 + AluY SINE Alu 1 311 0 24289 166 10 22 chrX 90025626 90026063 -72573867 + L1PA10 LINE L1 2807 3248 -3235 2144 108 0 10 chrX 90026063 90026381 -72573549 - AluSq SINE Alu 0 315 1 24289 166 10 22 chrX 90026381 90027243 -72572687 + L1PA10 LINE L1 3248 4119 -2364 200 35 35 0 chrX 90027243 90027272 -72572658 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 24289 166 10 22 chrX 90027272 90029742 -72570188 + L1PA10 LINE L1 4119 6479 -4 9934 194 16 11 chrX 90029750 90031804 -72568126 + L1PA14 LINE L1 3324 5387 -759 2755 133 18 37 chrX 90031815 90032327 -72567603 + L1PA14 LINE L1 5651 6152 -9 973 153 0 0 chrX 90032345 90032508 -72567422 - L1MA9 LINE L1 -288 6024 5862 1448 249 20 18 chrX 90032581 90032974 -72566956 - MSTD LTR MaLR 0 396 3 332 286 183 0 chrX 90032997 90033123 -72566807 + L2 LINE L2 3124 3272 0 661 138 0 0 chrX 90033889 90033998 -72565932 - L1PA11 LINE L1 -1 6173 6065 397 308 137 22 chrX 90034108 90034335 -72565595 - MIR SINE MIR -7 255 3 383 323 39 112 chrX 90034934 90035194 -72564736 - L2 LINE L2 -12 3260 3020 2061 187 15 36 chrX 90035417 90035898 -72564032 + L1ME1 LINE L1 5672 6137 -29 714 227 39 0 chrX 90036499 90036653 -72563277 - MIR SINE MIR -56 206 47 5028 217 39 66 chrX 90036970 90037782 -72562148 + L1MD2 LINE L1 3370 4202 -2157 535 224 8 32 chrX 90037782 90037907 -72562023 + FLAM_A SINE Alu 1 122 -11 5028 217 39 66 chrX 90037907 90037978 -72561952 + L1MD2 LINE L1 4202 4273 -2086 414 57 0 0 chrX 90037978 90038031 -72561899 + (CA)n Simple_repeat Simple_repeat 2 54 0 5028 217 39 66 chrX 90038031 90039490 -72560440 + L1MD2 LINE L1 4273 5602 -757 2264 101 3 0 chrX 90039490 90039786 -72560144 + AluSp SINE Alu 1 297 -16 5028 217 39 66 chrX 90039786 90040524 -72559406 + L1MD2 LINE L1 5602 6358 -1 5328 120 0 4 chrX 90040548 90041325 -72558605 - L1PA15 LINE L1 -3 6162 5389 229 203 80 109 chrX 90041459 90041597 -72558333 - MIR SINE MIR 0 262 129 230 279 13 0 chrX 90042539 90042618 -72557312 + CT-rich Low_complexity Low_complexity 2 81 0 261 0 0 0 chrX 90042620 90042649 -72557281 + (CA)n Simple_repeat Simple_repeat 2 30 0 621 221 62 7 chrX 90042840 90042985 -72556945 - MIR3 SINE MIR -9 199 47 595 298 75 48 chrX 90043804 90044056 -72555874 - MIR SINE MIR 0 262 4 195 328 94 0 chrX 90045629 90045693 -72554237 + L2 LINE L2 3151 3220 -52 601 324 36 5 chrX 90045817 90046036 -72553894 + MIR SINE MIR 5 230 -32 254 325 77 26 chrX 90047181 90047298 -72552632 + MIR SINE MIR 23 145 -63 188 184 132 0 chrX 90047743 90047781 -72552149 - MIR SINE MIR -218 44 2 338 287 58 46 chrX 90048779 90048953 -72550977 - MIR SINE MIR 0 262 87 267 54 0 0 chrX 90049464 90049501 -72550429 + (CA)n Simple_repeat Simple_repeat 2 38 0 810 249 20 10 chrX 90049883 90050080 -72549850 + L1MC4a LINE L1 6390 6588 -1220 441 0 0 0 chrX 90050112 90050161 -72549769 + (TG)n Simple_repeat Simple_repeat 2 50 0 3333 139 28 2 chrX 90050164 90050704 -72549226 - MER41C LTR ERV1 0 554 1 1886 136 56 6 chrX 90050707 90051031 -72548899 + MER2 DNA MER2_type 4 343 -1 315 0 0 0 chrX 90051032 90051067 -72548863 + (TG)n Simple_repeat Simple_repeat 2 36 0 387 196 100 45 chrX 90051085 90051195 -72548735 + L1MC4 LINE L1 7900 7994 -1 609 269 81 0 chrX 90051882 90052042 -72547888 - MER5B DNA MER1_type -3 175 3 469 301 84 7 chrX 90052051 90052194 -72547736 + MER5A DNA MER1_type 1 154 -35 254 350 124 7 chrX 90052087 90052224 -72547706 - MER5A DNA MER1_type -25 164 12 * 6575 124 22 28 chrX 90053482 90054779 -72545151 - L1MA2 LINE L1 0 6304 5017 255 333 11 0 chrX 90055111 90055198 -72544732 - L2 LINE L2 -1 3312 3225 1567 230 80 41 chrX 90055913 90056352 -72543578 + MLT1D LTR MaLR 44 499 -6 432 301 60 6 chrX 90057220 90057386 -72542544 - MER5B DNA MER1_type 0 178 4 446 252 212 13 chrX 90057413 90057564 -72542366 - MER5A DNA MER1_type 0 189 9 375 343 112 12 chrX 90058773 90058834 -72541096 - MIR3 SINE MIR -1 207 154 441 0 0 0 chrX 90058834 90058883 -72541047 + (TA)n Simple_repeat Simple_repeat 1 49 0 375 343 112 12 chrX 90058883 90058990 -72540940 - MIR3 SINE MIR -54 154 22 735 143 0 0 chrX 90060021 90060147 -72539783 - L1PB3 LINE L1 0 6154 6029 2543 47 0 3 chrX 90060148 90060449 -72539481 - AluY SINE Alu -11 300 1 439 272 13 38 chrX 90060507 90060665 -72539265 - L1ME2 LINE L1 -9 6155 6002 841 263 0 5 chrX 90060676 90060881 -72539049 - L1ME2 LINE L1 -454 5712 5509 736 164 35 7 chrX 90060882 90061063 -72538867 - L1MA6 LINE L1 -54 6246 6055 2516 99 8 0 chrX 90061655 90062007 -72537923 + THE1A LTR MaLR 1 355 0 1585 88 3 166 chrX 90062297 90062628 -72537302 + LTR12 LTR ERV1 1 277 -437 359 253 10 0 chrX 90062628 90062727 -72537203 + LTR30 LTR ERV1 544 643 -79 690 130 0 0 chrX 90062729 90062829 -72537101 + LTR12 LTR ERV1 615 714 0 22 56 0 0 chrX 90063018 90063054 -72536876 + AT_rich Low_complexity Low_complexity 1 36 0 633 242 0 0 chrX 90063105 90063237 -72536693 - FLAM_A SINE Alu -1 132 1 224 30 30 0 chrX 90063816 90063849 -72536081 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 265 288 186 28 chrX 90065156 90065333 -72534597 - MIR SINE MIR -10 252 48 189 304 152 11 chrX 90065349 90065441 -72534489 - MIR SINE MIR -110 152 48 479 320 58 6 chrX 90065600 90065772 -72534158 + MIR SINE MIR 3 183 -79 507 308 111 30 chrX 90065792 90066026 -72533904 - MIR SINE MIR -3 259 7 353 243 0 0 chrX 90066275 90066345 -72533585 - L2 LINE L2 -3 3269 3200 207 277 0 0 chrX 90066351 90066416 -72533514 + A-rich Low_complexity Low_complexity 1 65 0 2092 93 7 0 chrX 90066663 90066941 -72532989 + AluSg SINE Alu 30 309 -1 259 130 0 0 chrX 90067585 90067631 -72532299 - MADE1 DNA Mariner -34 46 1 252 143 0 0 chrX 90067798 90067840 -72532090 + (TG)n Simple_repeat Simple_repeat 1 42 0 22 35 0 0 chrX 90069791 90069820 -72530110 + AT_rich Low_complexity Low_complexity 1 29 0 316 264 141 9 chrX 90070063 90070227 -72529703 - MIR SINE MIR 0 262 38 718 364 57 22 chrX 90070258 90070896 -72529034 - L2 LINE L2 -168 3104 2430 208 293 154 0 chrX 90071048 90071171 -72528759 - L2 LINE L2 -6 3307 3166 1923 163 34 3 chrX 90071271 90071621 -72528309 + MER46B DNA MER2_type 1 236 0 730 308 31 9 chrX 90071929 90072156 -72527774 - MIR SINE MIR -27 235 4 1892 141 152 11 chrX 90072311 90072686 -72527244 - MSTA LTR MaLR 0 428 1 8397 172 26 16 chrX 90072686 90074248 -72525682 - MSTA-int LTR MaLR 0 1580 3 2063 127 153 10 chrX 90074250 90074636 -72525294 - MSTA LTR MaLR 0 428 1 260 140 40 0 chrX 90074869 90074919 -72525011 - L2 LINE L2 -6 3307 3256 1229 183 6 78 chrX 90075596 90075898 -72524032 + L1PA15 LINE L1 4737 5059 -1087 2167 203 19 64 chrX 90075898 90076478 -72523452 - MLT2B3 LTR ERVL 0 554 1 5370 148 14 1 chrX 90076478 90077683 -72522247 + L1PA15 LINE L1 4946 6164 -1 1229 183 6 78 chrX 90077683 90077701 -72522229 + L1PA15 LINE L1 5017 5035 -1111 333 125 0 0 chrX 90077721 90077777 -72522153 + (CA)n Simple_repeat Simple_repeat 2 57 0 2533 53 3 0 chrX 90078738 90079042 -72520888 + AluY SINE Alu 1 305 -6 2066 128 30 7 chrX 90079811 90080116 -72519814 + AluSx SINE Alu 1 312 0 183 319 0 64 chrX 90080840 90080934 -72518996 - L2 LINE L2 -5 3308 3221 490 157 34 0 chrX 90081759 90081848 -72518082 - MLT1B LTR MaLR 0 390 299 3433 123 34 21 chrX 90082126 90082792 -72517138 - MER4E LTR ERV1 0 766 1 22 0 0 0 chrX 90082911 90082933 -72516997 + AT_rich Low_complexity Low_complexity 1 22 0 1853 89 76 32 chrX 90084502 90084817 -72515113 - MER4C LTR ERV1 0 465 137 234 349 28 42 chrX 90085401 90085616 -72514314 + L1PBb LINE L1 349 560 -5644 5114 237 37 18 chrX 90085706 90086262 -72513668 + L1PBb LINE L1 691 1235 -4968 180 111 0 0 chrX 90086262 90086289 -72513641 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5114 237 37 18 chrX 90086289 90088038 -72511892 + L1PBb LINE L1 1235 3082 -3121 4747 151 8 20 chrX 90088045 90088947 -72510983 + L1PB4 LINE L1 5265 6155 -1 216 339 37 55 chrX 90088991 90089100 -72510830 + MIR3 SINE MIR 81 187 -21 416 356 66 61 chrX 90090341 90090768 -72509162 - L2 LINE L2 -1 3271 2843 191 162 68 0 chrX 90091133 90091207 -72508723 + CT-rich Low_complexity Low_complexity 6 84 0 562 76 65 11 chrX 90091723 90091815 -72508115 + L1MA1 LINE L1 5521 5617 -685 2050 122 31 14 chrX 90091815 90092152 -72507778 + L1MA1 LINE L1 5943 6302 0 1486 104 189 31 chrX 90092207 90092488 -72507442 + AluSg SINE Alu 1 322 0 941 244 62 15 chrX 90092488 90092812 -72507118 + L1MC3 LINE L1 6808 7146 -639 1280 141 4 20 chrX 90092822 90093074 -72506856 + L1MB3 LINE L1 5691 5934 -271 408 211 8 62 chrX 90093063 90093177 -72506753 + L1MC3 LINE L1 7143 7251 -534 * 4068 128 21 51 chrX 90093177 90093889 -72506041 + LTR8 LTR ERV1 1 691 0 408 211 8 62 chrX 90093889 90093902 -72506028 + L1MC3 LINE L1 7251 7263 -522 2647 144 7 42 chrX 90093904 90094565 -72505365 + LTR8A LTR ERV1 1 727 0 418 220 11 0 chrX 90094565 90094656 -72505274 + L1MC3 LINE L1 7263 7354 -431 1555 115 12 4 chrX 90094656 90094900 -72505030 - MER4-int LTR ERV1 -26 6572 6327 578 179 45 45 chrX 90094989 90095145 -72504785 - LTR1B LTR ERV1 -328 498 343 431 206 38 8 chrX 90095370 90095501 -72504429 - LTR1B LTR ERV1 -658 168 34 8327 112 20 10 chrX 90095630 90097023 -72502907 - LTR1B-int LTR ERV1 -237 4778 3372 1322 143 0 103 chrX 90097038 90097241 -72502689 - L1PB1 LINE L1 -2 6149 5985 2291 121 0 6 chrX 90097241 90097556 -72502374 - AluSq SINE Alu 0 313 1 1322 143 0 103 chrX 90097556 90097653 -72502277 - L1PB1 LINE L1 -166 5985 5880 691 129 23 94 chrX 90097794 90097877 -72502053 - L1PB1 LINE L1 -210 5941 5875 2385 95 3 0 chrX 90097877 90098181 -72501749 + AluSp SINE Alu 1 305 -8 691 129 23 94 chrX 90098181 90098268 -72501662 - L1PB1 LINE L1 -276 5875 5783 517 111 16 24 chrX 90098269 90098395 -72501535 + (TA)n Simple_repeat Simple_repeat 2 126 0 3314 174 24 1 chrX 90098396 90099555 -72500375 - L1PB1 LINE L1 -362 5789 4603 1902 88 41 16 chrX 90099556 90099876 -72500054 - MER4A-int LTR ERV1 -1719 4879 4552 1120 53 0 0 chrX 90099882 90100015 -72499915 - AluY SINE Alu -178 133 1 1100 97 28 23 chrX 90100019 90100236 -72499694 - MER4A-int LTR ERV1 -4633 1965 1748 291 54 0 0 chrX 90100239 90100276 -72499654 + (CA)n Simple_repeat Simple_repeat 2 38 0 4112 124 22 10 chrX 90100276 90101162 -72498768 - MER4A-int LTR ERV1 -5609 1149 198 1146 253 72 12 chrX 90101202 90101534 -72498396 - MER4A-int LTR ERV1 -4128 2203 1852 1971 161 26 76 chrX 90101586 90101890 -72498040 - MER4A-int LTR ERV1 -5762 836 518 234 0 0 0 chrX 90101890 90101916 -72498014 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1971 161 26 76 chrX 90101916 90102230 -72497700 - MER4A-int LTR ERV1 -6080 518 1 1746 123 158 75 chrX 90102233 90102606 -72497324 - MER4A LTR ERV1 0 664 261 573 124 0 10 chrX 90102608 90102705 -72497225 - MER4A LTR ERV1 -568 96 1 413 260 0 0 chrX 90102706 90102802 -72497128 + L1MD3 LINE L1 7873 7968 -27 223 279 0 29 chrX 90103220 90103288 -72496642 - MIR SINE MIR -91 171 106 253 231 121 33 chrX 90103338 90103429 -72496501 + MLT1D LTR MaLR 21 119 -386 858 236 212 33 chrX 90104289 90104624 -72495306 + MLT1D LTR MaLR 111 505 0 383 283 11 0 chrX 90104634 90104726 -72495204 - MIR SINE MIR -167 95 3 1539 205 14 0 chrX 90105311 90105589 -72494341 + AluJo SINE Alu 1 282 -30 244 186 39 47 chrX 90105589 90105718 -72494212 + (TTATA)n Simple_repeat Simple_repeat 3 130 0 295 257 8 165 chrX 90105764 90105779 -72494151 - MIR SINE MIR -53 209 193 935 213 62 86 chrX 90105779 90106150 -72493780 + MLT1A1 LTR MaLR 4 365 0 295 257 8 165 chrX 90106150 90106371 -72493559 - MIR SINE MIR -69 193 10 525 141 48 26 chrX 90106915 90107024 -72492906 - MLT1B LTR MaLR -260 105 1 305 190 0 0 chrX 90107234 90107292 -72492638 + MER52A LTR ERV1 1 58 -1697 6228 205 139 16 chrX 90108106 90109621 -72490309 + MER52A LTR ERV1 56 1755 0 5402 160 52 20 chrX 90109621 90110961 -72488969 - MER50-int LTR ERV1 -5739 1466 4 2505 236 44 103 chrX 90111003 90111783 -72488147 - MER50 LTR ERV1 0 734 1 200 237 0 0 chrX 90111820 90111858 -72488072 - MIR SINE MIR -212 50 13 22 0 0 0 chrX 90112026 90112048 -72487882 + AT_rich Low_complexity Low_complexity 1 22 0 2058 214 41 20 chrX 90112223 90112713 -72487217 - MLT1D LTR MaLR -5 500 1 28 29 0 0 chrX 90112992 90113027 -72486903 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chrX 90113073 90113108 -72486822 + AT_rich Low_complexity Low_complexity 1 35 0 302 330 11 85 chrX 90113243 90113419 -72486511 + L1MDa LINE L1 409 571 -5969 1675 241 71 18 chrX 90113613 90114231 -72485699 + L1MDa LINE L1 900 1550 -4993 376 259 65 0 chrX 90114229 90114368 -72485562 + L1MDa LINE L1 2288 2435 -4105 * 519 206 23 15 chrX 90114411 90114542 -72485388 + MLT1D LTR MaLR 52 183 -322 1648 130 3 7 chrX 90114657 90114938 -72484992 - Tigger3(Golem) DNA MER2_type -72 2957 2678 330 54 0 26 chrX 90114938 90115010 -72484920 - MLT2A2 LTR ERVL 0 453 390 202 102 20 41 chrX 90115013 90115062 -72484868 + (TA)n Simple_repeat Simple_repeat 2 49 0 2608 94 43 13 chrX 90115063 90115482 -72484448 - MLT2A1 LTR ERVL -35 480 1 3987 121 37 24 chrX 90115482 90115771 -72484159 - Tigger3(Golem) DNA MER2_type -347 2682 2398 180 111 0 0 chrX 90115771 90115798 -72484132 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 726 198 0 0 chrX 90115800 90115916 -72484014 - FLAM_A SINE Alu -17 116 1 3987 121 37 24 chrX 90115916 90116378 -72483552 - Tigger3(Golem) DNA MER2_type -631 2398 1918 3498 147 59 29 chrX 90116370 90116537 -72483393 - Tigger3(Golem) DNA MER2_type -2313 716 556 * 2141 124 3 0 chrX 90116537 90116836 -72483094 - AluSq SINE Alu -13 300 1 3498 147 59 29 chrX 90116836 90117363 -72482567 - Tigger3(Golem) DNA MER2_type -2473 556 1 381 317 76 53 chrX 90117383 90117724 -72482206 + L1M4 LINE L1 88 436 -6106 2072 234 78 80 chrX 90117783 90118787 -72481143 + L1M4 LINE L1 485 1477 -5169 2613 24 7 0 chrX 90118787 90119084 -72480846 + AluY SINE Alu 1 299 -12 2072 234 78 80 chrX 90119084 90119487 -72480443 + L1M4 LINE L1 1477 1879 -4767 443 226 51 44 chrX 90119645 90119782 -72480148 - MSTB1 LTR MaLR -120 312 175 680 170 13 25 chrX 90119985 90120144 -72479786 + L1MB8 LINE L1 6021 6177 -1 23 0 0 0 chrX 90120146 90120169 -72479761 + AT_rich Low_complexity Low_complexity 1 23 0 1866 195 19 48 chrX 90120194 90120670 -72479260 - MLT1D LTR MaLR 0 505 44 21 36 0 0 chrX 90120983 90121011 -72478919 + AT_rich Low_complexity Low_complexity 1 28 0 299 328 30 30 chrX 90121238 90121369 -72478561 + L2 LINE L2 2512 2642 -672 510 303 0 0 chrX 90121384 90121529 -72478401 - MIR SINE MIR 0 262 118 346 338 101 49 chrX 90121609 90122212 -72477718 + L2 LINE L2 2616 3242 -30 972 248 82 33 chrX 90122379 90122887 -72477043 + MLT1F1 LTR MaLR 1 565 -2 22 0 0 0 chrX 90123934 90123956 -72475974 + AT_rich Low_complexity Low_complexity 1 22 0 242 246 18 0 chrX 90124723 90124780 -72475150 + MLT1I LTR MaLR 294 351 -58 350 178 0 41 chrX 90124830 90124903 -72475027 - MER2 DNA MER2_type -8 337 268 1024 163 12 17 chrX 90124989 90125161 -72474769 - MER2 DNA MER2_type -173 172 2 544 234 28 21 chrX 90125233 90125374 -72474556 + MIR SINE MIR 112 253 -9 1271 81 0 0 chrX 90126528 90126689 -72473241 - AluSp SINE Alu -18 295 135 1562 130 77 69 chrX 90126708 90126906 -72473024 + L1MA7 LINE L1 5923 6127 -164 2095 112 27 0 chrX 90126906 90127202 -72472728 + AluSx SINE Alu 1 304 -8 1562 130 77 69 chrX 90127202 90127365 -72472565 + L1MA7 LINE L1 6127 6287 -4 21 0 0 0 chrX 90127365 90127386 -72472544 + AT_rich Low_complexity Low_complexity 1 21 0 701 316 78 0 chrX 90127641 90127859 -72472071 - MIR SINE MIR -26 236 2 695 213 0 0 chrX 90127929 90128051 -72471879 + FLAM_A SINE Alu 2 123 -10 787 271 107 29 chrX 90128788 90129338 -72470592 + L1ME1 LINE L1 3213 3805 -2341 1967 229 73 81 chrX 90129380 90130386 -72469544 + L1ME1 LINE L1 4384 5374 -792 2053 188 36 9 chrX 90130386 90130807 -72469123 + MSTB1 LTR MaLR 1 432 0 1967 229 73 81 chrX 90130807 90130859 -72469071 + L1ME1 LINE L1 5374 5425 -741 2472 57 0 3 chrX 90130859 90131158 -72468772 + AluY SINE Alu 1 298 -13 2921 189 54 5 chrX 90131200 90131793 -72468137 - MER67B LTR ERV1 -27 634 13 282 154 46 46 chrX 90131793 90131858 -72468072 + L1ME1 LINE L1 5546 5610 -554 957 205 0 0 chrX 90131860 90132016 -72467914 + AluJb SINE Alu 134 289 -23 1563 238 142 12 chrX 90132016 90132517 -72467413 + L1ME1 LINE L1 5595 6160 -6 905 268 77 65 chrX 90132533 90133084 -72466846 + L1ME4a LINE L1 4305 4848 -1298 2240 117 0 0 chrX 90133084 90133391 -72466539 + AluSc SINE Alu 1 307 -2 1334 200 79 45 chrX 90133393 90133748 -72466182 - MER93b LTR ERV1 -4 369 3 905 268 77 65 chrX 90133748 90133947 -72465983 + L1ME4a LINE L1 4848 5067 -1079 31 44 0 0 chrX 90134143 90134188 -72465742 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chrX 90134354 90134377 -72465553 + AT_rich Low_complexity Low_complexity 1 23 0 617 231 45 0 chrX 90134705 90134839 -72465091 + MIR SINE MIR 87 226 -36 22 35 0 0 chrX 90134891 90134920 -72465010 + AT_rich Low_complexity Low_complexity 1 29 0 17960 168 75 13 chrX 90134971 90138420 -72461510 + L1M1 LINE L1 9 3670 -3895 430 281 83 38 chrX 90138395 90138636 -72461294 + L1ME3A LINE L1 7066 7324 -265 * 1395 243 45 63 chrX 90138636 90139163 -72460767 + MLT2B1 LTR ERVL 1 518 -2 430 281 83 38 chrX 90139163 90139209 -72460721 + L1ME3A LINE L1 7324 7366 -223 266 294 72 59 chrX 90139252 90139405 -72460525 + L1ME3A LINE L1 7343 7497 -92 3875 149 3 0 chrX 90139680 90140311 -72459619 + L1PA13 LINE L1 5528 6160 -3 497 208 27 13 chrX 90140497 90140646 -72459284 + L1MCa LINE L1 1458 1608 -4818 816 298 78 28 chrX 90140701 90141134 -72458796 + L1ME4a LINE L1 5255 5709 -2099 5925 113 12 34 chrX 90141139 90142415 -72457515 - L1PA13 LINE L1 -2 6161 4896 258 277 212 36 chrX 90143066 90143198 -72456732 - MIR SINE MIR -27 181 41 215 266 0 31 chrX 90143229 90143293 -72456637 + (TTCA)n Simple_repeat Simple_repeat 3 64 0 228 238 133 19 chrX 90143519 90143624 -72456306 + L1ME4a LINE L1 5993 6109 -12 455 339 42 53 chrX 90143655 90144110 -72455820 - L2 LINE L2 -1068 2246 1797 243 0 0 0 chrX 90144111 90144138 -72455792 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2324 106 0 0 chrX 90144815 90145116 -72454814 + AluSx SINE Alu 1 301 -11 485 290 97 43 chrX 90145294 90145501 -72454429 - MIR SINE MIR -32 230 13 259 220 101 110 chrX 90145555 90145773 -72454157 - L1MC4 LINE L1 -1 8041 7826 1762 213 29 39 chrX 90145811 90146299 -72453631 - L1ME2 LINE L1 -9 6155 5673 372 290 28 0 chrX 90146518 90146625 -72453305 + MIR SINE MIR 103 212 -50 22996 36 4 1 chrX 90146644 90150262 -72449668 - L1PA4 LINE L1 -1 6154 2531 21 0 0 31 chrX 90150618 90150631 -72449299 + AT_rich Low_complexity Low_complexity 1 13 -18 10460 26 0 0 chrX 90150631 90152632 -72447298 - L1PA3 LINE L1 -3 6152 4152 21 0 0 31 chrX 90152632 90152650 -72447280 + AT_rich Low_complexity Low_complexity 13 31 0 251 377 132 6 chrX 90152807 90152966 -72446964 - L2 LINE L2 -18 3254 3076 202 282 12 0 chrX 90153332 90153417 -72446513 + (TA)n Simple_repeat Simple_repeat 2 87 0 24 32 0 0 chrX 90153670 90153701 -72446229 + AT_rich Low_complexity Low_complexity 1 31 0 543 352 53 8 chrX 90154555 90154802 -72445128 - MIR SINE MIR -3 259 2 300 233 0 0 chrX 90155413 90155473 -72444457 + L2 LINE L2 3209 3268 -4 25 0 0 0 chrX 90155562 90155587 -72444343 + AT_rich Low_complexity Low_complexity 1 25 0 374 70 35 0 chrX 90155835 90155892 -72444038 + (TATG)n Simple_repeat Simple_repeat 2 60 0 228 224 0 35 chrX 90155892 90155977 -72443953 + L1MCa LINE L1 1995 2076 -4350 22 56 0 0 chrX 90156493 90156529 -72443401 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chrX 90157292 90157328 -72442602 + AT_rich Low_complexity Low_complexity 1 36 0 218 353 52 52 chrX 90159293 90159409 -72440521 + L2 LINE L2 3137 3252 -20 651 288 14 0 chrX 90159674 90159820 -72440110 - MIR SINE MIR -83 179 32 218 325 26 13 chrX 90161485 90161562 -72438368 - MIR SINE MIR -160 102 25 44241 38 1 1 chrX 90161624 90167775 -72432155 + L1PA3 LINE L1 7 6152 -3 367 278 68 19 chrX 90168775 90168937 -72430993 - MIR SINE MIR 0 262 93 438 79 40 0 chrX 90169219 90169295 -72430635 + (CA)n Simple_repeat Simple_repeat 2 80 0 531 82 0 0 chrX 90169297 90169370 -72430560 + (TG)n Simple_repeat Simple_repeat 2 74 0 1577 238 77 42 chrX 90169573 90170069 -72429861 - MLT2B1 LTR ERVL -7 513 1 2573 147 16 5 chrX 90170691 90171114 -72428816 + MSTA LTR MaLR 1 428 0 8642 178 41 10 chrX 90171114 90171286 -72428644 + MSTA-int LTR MaLR 1 166 -1485 2132 112 0 30 chrX 90171286 90171589 -72428341 + AluSx SINE Alu 1 294 -18 8642 178 41 10 chrX 90171589 90173018 -72426912 + MSTA-int LTR MaLR 166 1651 0 2277 164 42 17 chrX 90173021 90173430 -72426500 + MSTA LTR MaLR 10 428 0 1426 216 38 65 chrX 90173865 90174360 -72425570 + L1MC4 LINE L1 4351 4832 -1314 389 169 0 14 chrX 90174348 90174419 -72425511 + L1P LINE L1 1698 1767 -4379 * 479 239 0 0 chrX 90174426 90174518 -72425412 + L1PA12 LINE L1 1118 1209 -6372 6055 152 11 31 chrX 90174528 90176587 -72423343 + L1MA1 LINE L1 4321 6302 0 1697 195 48 155 chrX 90176599 90176981 -72422949 + L1MC4 LINE L1 5188 4748 -1398 486 98 37 0 chrX 90176981 90177063 -72422867 + L1MA5 LINE L1 6216 6300 0 1697 195 48 155 chrX 90177063 90177657 -72422273 + L1MC4 LINE L1 4747 5403 -743 * 2988 197 47 28 chrX 90177074 90177753 -72422177 + L1MB8 LINE L1 5476 6167 -11 21 36 0 0 chrX 90178197 90178225 -72421705 + AT_rich Low_complexity Low_complexity 1 28 0 11184 131 12 7 chrX 90178711 90181329 -72418601 - L1PA10 LINE L1 0 6168 3540 6588 193 21 10 chrX 90181330 90182772 -72417158 + L1MA3 LINE L1 3907 5364 -782 2134 156 78 2 chrX 90182772 90183170 -72416760 + MSTA LTR MaLR 1 428 0 7618 194 70 7 chrX 90183181 90184715 -72415215 + MSTA-int LTR MaLR 22 1651 0 2482 146 39 5 chrX 90184718 90185128 -72414802 + MSTA LTR MaLR 3 426 -2 5424 117 72 2 chrX 90185130 90186014 -72413916 + L1MA3 LINE L1 5360 6305 0 194 345 23 35 chrX 90186289 90186376 -72413554 + MIR SINE MIR 68 153 -55 6678 142 48 9 chrX 90186779 90187953 -72411977 + Tigger3b DNA MER2_type 1 1219 -12 842 285 50 18 chrX 90187953 90188335 -72411595 - L1ME4a LINE L1 -209 5912 5519 21 0 0 0 chrX 90188341 90188362 -72411568 + AT_rich Low_complexity Low_complexity 1 21 0 4625 129 32 8 chrX 90189749 90190521 -72409409 + L1MA3 LINE L1 5515 6305 0 701 294 25 10 chrX 90191164 90191365 -72408565 - MIR SINE MIR 0 262 59 582 228 26 0 chrX 90191914 90192028 -72407902 + MIR SINE MIR 4 120 -142 234 0 0 0 chrX 90192110 90192136 -72407794 + (T)n Simple_repeat Simple_repeat 1 26 0 2034 213 72 37 chrX 90192203 90192770 -72407160 + L1MD2 LINE L1 5760 6346 -13 230 213 128 0 chrX 90192987 90193034 -72406896 - MER5B DNA MER1_type -3 175 123 384 276 26 6 chrX 90193815 90193971 -72405959 + L1 LINE L1 4458 4616 -1530 234 289 89 33 chrX 90194255 90194435 -72405495 + L1 LINE L1 4903 5092 -1054 390 160 0 40 chrX 90194654 90194729 -72405201 + L1MA6 LINE L1 6210 6281 -19 12096 107 31 24 chrX 90194737 90196948 -72402982 + L1PA7 LINE L1 11 2266 -4195 * 21648 89 8 6 chrX 90196943 90200905 -72399025 + L1PA7 LINE L1 2504 6468 -1 256 115 98 49 chrX 90201112 90201173 -72398757 + L1ME4a LINE L1 6054 6117 -4 22 35 0 0 chrX 90201254 90201283 -72398647 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chrX 90201358 90201389 -72398541 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chrX 90202432 90202474 -72397456 + AT_rich Low_complexity Low_complexity 1 42 0 328 231 92 31 chrX 90203532 90203662 -72396268 + L1ME4a LINE L1 5971 6108 -13 1818 96 100 0 chrX 90203944 90204195 -72395735 + AluSp SINE Alu 1 276 -37 375 41 0 0 chrX 90204199 90204248 -72395682 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 437 375 0 6 chrX 90204849 90205025 -72394905 + C-rich Low_complexity Low_complexity 2 176 0 564 165 0 0 chrX 90207382 90207497 -72392433 + (CTG)n Simple_repeat Simple_repeat 1 115 0 343 293 7 7 chrX 90207672 90207812 -72392118 + (CGG)n Simple_repeat Simple_repeat 3 142 0 22 56 0 0 chrX 90208118 90208154 -72391776 + AT_rich Low_complexity Low_complexity 1 36 0 243 0 0 0 chrX 90208282 90208309 -72391621 + (A)n Simple_repeat Simple_repeat 1 27 0 406 271 83 79 chrX 90209491 90210008 -72389922 - L1ME4a LINE L1 -78 6043 5525 212 353 20 20 chrX 90210022 90210124 -72389806 - L2 LINE L2 -6 3266 3165 300 308 59 54 chrX 90210251 90210472 -72389458 - L1ME4a LINE L1 -1127 5019 4798 364 230 62 9 chrX 90210521 90210634 -72389296 - HAL1b LINE L1 0 1348 1230 307 230 195 0 chrX 90210671 90210758 -72389172 - L1M LINE L1 -2385 5423 5320 2867 215 75 27 chrX 90211793 90212669 -72387261 - L1ME1 LINE L1 -72 6094 5131 539 78 133 0 chrX 90212669 90212759 -72387171 - L1MA4 LINE L1 -4 6296 6195 2867 215 75 27 chrX 90212759 90213107 -72386823 - L1ME1 LINE L1 -1035 5131 4801 711 161 45 0 chrX 90213858 90214013 -72385917 - L1MA8 LINE L1 -6 6285 6124 4133 167 30 16 chrX 90214019 90214041 -72385889 - L1MA8 LINE L1 -244 6047 6027 1818 113 3 94 chrX 90214041 90214370 -72385560 - AluSc SINE Alu -10 299 1 4133 167 30 16 chrX 90214370 90215292 -72384638 - L1MA8 LINE L1 -264 6027 5091 239 130 43 29 chrX 90215508 90215577 -72384353 + (TA)n Simple_repeat Simple_repeat 2 71 0 258 32 0 0 chrX 90215577 90215608 -72384322 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chrX 90216022 90216044 -72383886 + AT_rich Low_complexity Low_complexity 1 22 0 746 246 26 11 chrX 90216376 90216567 -72383363 + MIR SINE MIR 32 225 -37 2228 108 3 0 chrX 90216912 90217208 -72382722 - AluSq SINE Alu -16 297 1 2894 145 40 4 chrX 90217868 90218673 -72381257 - L1M2 LINE L1 -698 5599 4776 225 325 0 0 chrX 90218807 90218887 -72381043 + L1MC/D LINE L1 5852 5931 -1877 26 0 0 0 chrX 90219044 90219070 -72380860 + AT_rich Low_complexity Low_complexity 1 26 0 2266 105 3 0 chrX 90220121 90220427 -72379503 + AluSx SINE Alu 2 308 -4 321 287 11 0 chrX 90220621 90220715 -72379215 + MIR SINE MIR 60 154 -108 361 270 88 19 chrX 90220721 90220880 -72379050 - LTR67 LTR ERVL 0 557 388 2969 99 45 2 chrX 90221342 90221786 -72378144 + L1PB2 LINE L1 5686 6148 -3 26 0 0 0 chrX 90221786 90221812 -72378118 + AT_rich Low_complexity Low_complexity 1 26 0 4145 148 23 29 chrX 90221820 90222608 -72377322 - L1MA6 LINE L1 -11 6289 5507 217 315 82 55 chrX 90222749 90222895 -72377035 + L2 LINE L2 3161 3310 -3 191 275 84 70 chrX 90222970 90223112 -72376818 - L2 LINE L2 -2 3311 3168 24 67 0 0 chrX 90223132 90223177 -72376753 + AT_rich Low_complexity Low_complexity 1 45 0 2217 82 34 0 chrX 90223344 90223635 -72376295 - AluSx SINE Alu -11 301 1 27 0 0 0 chrX 90223644 90223671 -72376259 + AT_rich Low_complexity Low_complexity 1 27 0 368 238 88 27 chrX 90223677 90223824 -72376106 + L1ME4a LINE L1 5751 5906 -215 2906 220 56 30 chrX 90224504 90226159 -72373771 - L1MB7 LINE L1 0 6995 5252 349 289 73 28 chrX 90226178 90226349 -72373581 - L1MB7 LINE L1 -6612 247 62 1325 187 4 0 chrX 90226349 90226584 -72373346 - MER46A DNA MER2_type 0 236 1 349 289 73 28 chrX 90226584 90226630 -72373300 - L1MB7 LINE L1 -6797 62 20 495 263 0 25 chrX 90227064 90227182 -72372748 + L2 LINE L2 3199 3313 0 232 324 40 34 chrX 90227841 90227989 -72371941 - MIR SINE MIR -64 198 50 419 289 16 55 chrX 90229496 90229541 -72370389 - MER5A DNA MER1_type 0 189 144 2271 85 3 3 chrX 90229541 90229846 -72370084 - AluSx SINE Alu -7 305 1 419 289 16 55 chrX 90229846 90229928 -72370002 - MER5A DNA MER1_type -45 144 67 2575 45 0 10 chrX 90229928 90230237 -72369693 - AluY SINE Alu -5 306 1 2472 53 0 0 chrX 90230932 90231232 -72368698 + AluY SINE Alu 1 300 -11 306 333 39 31 chrX 90231322 90231451 -72368479 - MER5A DNA MER1_type -6 183 54 230 0 33 0 chrX 90231461 90231491 -72368439 + (TA)n Simple_repeat Simple_repeat 1 31 0 34 24 0 0 chrX 90231501 90231542 -72368388 + AT_rich Low_complexity Low_complexity 1 41 0 1611 188 48 51 chrX 90231592 90232006 -72367924 - Charlie1 DNA MER1_type -6 2755 2343 294 246 16 0 chrX 90232005 90232066 -72367864 - Charlie1 DNA MER1_type -2691 70 9 * 21 0 0 0 chrX 90232197 90232218 -72367712 + AT_rich Low_complexity Low_complexity 1 21 0 1484 270 18 16 chrX 90232682 90233126 -72366804 - L2 LINE L2 -1209 2105 1661 277 355 88 38 chrX 90233140 90233511 -72366419 - L2 LINE L2 -70 3202 2770 392 264 28 0 chrX 90233994 90234100 -72365830 - L1MC4 LINE L1 -144 7898 7790 363 292 95 7 chrX 90234185 90234322 -72365608 - L1MB7 LINE L1 -9 6175 6027 347 258 73 53 chrX 90234365 90234516 -72365414 - L1MC5 LINE L1 -442 7519 7366 278 173 0 0 chrX 90234652 90234704 -72365226 + L2 LINE L2 3262 3313 0 3546 180 112 117 chrX 90236415 90236866 -72363064 + L1MC3 LINE L1 6641 7092 -693 277 273 34 23 chrX 90236866 90236954 -72362976 + MLT1F1 LTR MaLR 45 133 -434 3546 180 112 117 chrX 90236954 90237199 -72362731 + L1MC3 LINE L1 7092 7337 -448 1955 156 0 3 chrX 90237199 90237507 -72362423 + AluJb SINE Alu 1 307 -5 3546 180 112 117 chrX 90237507 90237872 -72362058 + L1MC3 LINE L1 7337 7785 0 200 304 0 0 chrX 90239133 90239179 -72360751 + L2 LINE L2 2925 2970 -344 442 349 83 93 chrX 90239803 90241364 -72358566 + L2 LINE L2 1293 2837 -477 309 406 10 8 chrX 90241737 90242053 -72357877 + L2 LINE L2 2707 3059 -213 459 299 26 81 chrX 90242101 90242372 -72357558 - L2 LINE L2 -1 3312 3057 325 289 235 5 chrX 90242448 90242758 -72357172 - L2 LINE L2 -227 3045 2616 683 305 8 47 chrX 90242793 90243029 -72356901 + MIR SINE MIR 34 260 -2 467 346 12 8 chrX 90243028 90243271 -72356659 - L2 LINE L2 -698 2616 2373 * 186 133 0 0 chrX 90243979 90244009 -72355921 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 204 185 0 0 chrX 90244379 90244433 -72355497 + GA-rich Low_complexity Low_complexity 2 55 0 615 279 43 75 chrX 90246270 90246618 -72353312 + MLT1I LTR MaLR 71 407 -2 669 284 29 29 chrX 90247711 90247822 -72352108 + MIR SINE MIR 48 161 -101 2542 153 21 5 chrX 90247822 90248241 -72351689 - MSTB LTR MaLR 0 426 1 669 284 29 29 chrX 90248241 90248333 -72351597 + MIR SINE MIR 160 251 -11 520 151 0 0 chrX 90248619 90248705 -72351225 - L1MB7 LINE L1 -10 6174 6089 863 222 34 8 chrX 90248811 90249050 -72350880 - L1MB8 LINE L1 -103 6075 5831 524 239 49 54 chrX 90250251 90250435 -72349495 - LTR33 LTR ERVL 0 521 339 783 242 31 21 chrX 90250515 90250709 -72349221 - LTR33 LTR ERVL -324 197 2 1434 288 56 37 chrX 90250935 90251564 -72348366 - ERVL LTR ERVL -384 5380 4740 1701 325 84 15 chrX 90251667 90252543 -72347387 - ERVL LTR ERVL -1102 4552 3569 750 217 25 0 chrX 90252599 90252756 -72347174 - L1MC1 LINE L1 -2 6331 6171 3551 26 0 5 chrX 90252758 90253181 -72346749 + L1PA3 LINE L1 5731 6151 -4 3286 164 11 5 chrX 90253236 90253804 -72346126 - L1MC1 LINE L1 -148 6185 5615 906 338 59 9 chrX 90253995 90254301 -72345629 - ERVL LTR ERVL -2460 3304 2966 369 0 0 0 chrX 90254301 90254342 -72345588 + (TG)n Simple_repeat Simple_repeat 1 41 0 906 338 59 9 chrX 90254342 90254491 -72345439 - ERVL LTR ERVL -2798 2966 2826 295 301 140 0 chrX 90254502 90254595 -72345335 + MER5C DNA MER1_type 1 106 -218 205 156 141 0 chrX 90254642 90254676 -72345254 + MER5C DNA MER1_type 210 238 -86 1424 190 0 19 chrX 90254676 90254945 -72344985 + L1PA16 LINE L1 5897 6160 -6 205 156 141 0 chrX 90254945 90254974 -72344956 + MER5C DNA MER1_type 238 282 -42 22 35 0 0 chrX 90254974 90255003 -72344927 + AT_rich Low_complexity Low_complexity 1 29 0 2288 336 58 35 chrX 90255050 90256405 -72343525 - ERVL LTR ERVL -2952 2812 1312 780 242 5 21 chrX 90256479 90256665 -72343265 - MER5A DNA MER1_type 0 189 7 310 296 24 72 chrX 90258667 90258683 -72341247 + MER5A DNA MER1_type 2 11 -178 344 310 28 42 chrX 90258683 90258825 -72341105 - MER5A DNA MER1_type -3 186 47 334 344 126 41 chrX 90258969 90259263 -72340667 - L2 LINE L2 -3 3269 2951 186 356 107 23 chrX 90259480 90259789 -72340141 + L2 LINE L2 676 1010 -2304 301 301 27 41 chrX 90260054 90260200 -72339730 + L2 LINE L2 2225 2368 -946 229 229 67 140 chrX 90260285 90260464 -72339466 + MIR SINE MIR 97 262 0 1176 262 20 33 chrX 90261063 90261456 -72338474 - MLT1E2 LTR MaLR -238 388 1 2743 263 31 100 chrX 90261457 90262927 -72337003 - MLT1E2-int LTR MaLR -1 1370 2 1375 257 31 44 chrX 90262931 90263474 -72336456 - MLT1E2 LTR MaLR -3 623 1 314 231 29 39 chrX 90263531 90263635 -72336295 - L1MDa LINE L1 -6420 120 18 987 248 48 24 chrX 90264435 90264685 -72335245 + MIR SINE MIR 7 262 0 186 167 0 0 chrX 90264953 90264989 -72334941 + GA-rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chrX 90265041 90265061 -72334869 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 287 241 12 60 chrX 90265062 90265145 -72334785 + L2 LINE L2 3235 3313 0 687 245 31 0 chrX 90265502 90265665 -72334265 - MER5A DNA MER1_type -1 188 21 670 260 139 0 chrX 90265664 90265887 -72334043 - L2 LINE L2 -37 3276 3023 * 23 33 0 0 chrX 90265960 90265990 -72333940 + AT_rich Low_complexity Low_complexity 1 30 0 1956 136 3 23 chrX 90266137 90266439 -72333491 + AluJb SINE Alu 1 296 -16 195 364 0 13 chrX 90267007 90267084 -72332846 + MIR3 SINE MIR 98 173 -35 14943 220 22 18 chrX 90267799 90268516 -72331414 - L1PA15 LINE L1 -4 6812 6100 1518 179 32 11 chrX 90268516 90268801 -72331129 - AluJb SINE Alu -21 291 1 14943 220 22 18 chrX 90268801 90273522 -72326408 - L1PA15 LINE L1 -716 6100 1330 892 305 68 49 chrX 90273509 90273935 -72325995 - L1PA15 LINE L1 -6076 711 278 * 729 152 0 30 chrX 90273968 90274100 -72325830 - FLAM_C SINE Alu 0 143 16 328 343 57 7 chrX 90275035 90275175 -72324755 - L2 LINE L2 0 3313 3167 1834 151 3 14 chrX 90275828 90276120 -72323810 + AluSx SINE Alu 1 315 0 235 0 0 0 chrX 90276120 90276146 -72323784 + (TAAA)n Simple_repeat Simple_repeat 3 136 0 2275 245 65 35 chrX 90276389 90276763 -72323167 + L1ME1 LINE L1 5401 5762 -404 2018 113 0 55 chrX 90276763 90277074 -72322856 + AluSg SINE Alu 1 294 -16 2275 245 65 35 chrX 90277074 90277436 -72322494 + L1ME1 LINE L1 5762 6157 -9 623 247 21 11 chrX 90277753 90277939 -72321991 - MER112 DNA MER1_type -7 253 66 472 81 0 0 chrX 90279239 90279313 -72320617 + L1PA10 LINE L1 6095 6168 0 195 354 53 0 chrX 90279460 90279573 -72320357 + L2 LINE L2 3150 3268 -4 369 43 0 0 chrX 90280052 90280099 -72319831 + (TG)n Simple_repeat Simple_repeat 2 48 0 205 297 22 44 chrX 90280569 90280660 -72319270 - MIR SINE MIR 0 262 174 480 352 48 13 chrX 90280745 90280975 -72318955 + MIR SINE MIR 25 262 0 636 315 72 76 chrX 90281199 90281935 -72317995 - L2 LINE L2 -676 2638 1906 335 191 0 0 chrX 90281935 90281998 -72317932 + LTR33 LTR ERVL 1 63 -458 583 318 97 19 chrX 90282030 90282338 -72317592 + LTR33 LTR ERVL 117 448 -73 371 369 45 34 chrX 90282401 90282753 -72317177 - L2 LINE L2 -1426 1888 1533 2209 99 3 26 chrX 90283424 90283737 -72316193 + AluSg SINE Alu 1 306 -4 24 0 0 0 chrX 90284024 90284048 -72315882 + AT_rich Low_complexity Low_complexity 1 24 0 869 277 29 0 chrX 90284665 90284903 -72315027 + MIR SINE MIR 6 250 -12 363 276 60 0 chrX 90284903 90285019 -72314911 - MIR SINE MIR -92 170 48 500 141 22 0 chrX 90285314 90285406 -72314524 + MER5A DNA MER1_type 13 106 -83 21 0 0 0 chrX 90286390 90286411 -72313519 + AT_rich Low_complexity Low_complexity 1 21 0 2189 121 3 0 chrX 90286463 90286768 -72313162 + AluSg SINE Alu 1 306 -4 27 81 0 0 chrX 90286775 90286837 -72313093 + AT_rich Low_complexity Low_complexity 1 62 0 408 319 73 34 chrX 90287106 90287310 -72312620 - MIR SINE MIR -49 213 2 2211 95 3 3 chrX 90287596 90287891 -72312039 + AluSx SINE Alu 1 295 -17 317 316 60 47 chrX 90287912 90288132 -72311798 - MIR SINE MIR -18 244 32 349 207 11 46 chrX 90288351 90288438 -72311492 - L2 LINE L2 -5 3308 3225 180 0 0 0 chrX 90288493 90288513 -72311417 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 218 286 52 39 chrX 90289334 90289411 -72310519 + L2 LINE L2 3227 3304 -9 434 295 83 26 chrX 90289516 90289709 -72310221 - MIR SINE MIR 0 262 59 622 333 28 10 chrX 90289713 90289947 -72309983 + MIR SINE MIR 17 256 -6 231 304 0 27 chrX 90290350 90290462 -72309468 - L1M4 LINE L1 -1832 4314 4206 198 0 0 0 chrX 90290937 90290959 -72308971 + (T)n Simple_repeat Simple_repeat 1 22 0 516 245 13 45 chrX 90291214 90291369 -72308561 - Charlie2 DNA MER1_type 0 2862 2713 1939 45 0 24 chrX 90291431 90291677 -72308253 - AluY SINE Alu -3 308 69 490 46 0 0 chrX 90291859 90291924 -72308006 - AluS SINE Alu -248 65 1 635 235 64 39 chrX 90291924 90292128 -72307802 - L1ME3 LINE L1 -32 6130 5922 1926 216 111 31 chrX 90292238 90292983 -72306947 - Charlie2 DNA MER1_type -188 2674 1870 244 188 0 0 chrX 90292990 90293038 -72306892 - Charlie2 DNA MER1_type -2540 322 275 995 275 12 9 chrX 90293052 90293379 -72306551 - L1ME1 LINE L1 -5 6161 5834 586 249 138 58 chrX 90293380 90293641 -72306289 - Charlie2 DNA MER1_type -2574 288 7 358 250 0 0 chrX 90293719 90293795 -72306135 + MIR SINE MIR 110 185 -77 662 222 34 34 chrX 90295397 90295604 -72304326 - L1MC5 LINE L1 -44 7917 7711 599 261 157 0 chrX 90295680 90295833 -72304097 - MER5A DNA MER1_type 0 189 13 255 21 85 0 chrX 90295847 90295894 -72304036 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1004 157 176 70 chrX 90296245 90296557 -72303373 + MER4A LTR ERV1 2 346 -318 253 82 0 197 chrX 90296561 90296622 -72303308 + MER4A LTR ERV1 306 354 -310 535 128 256 8 chrX 90296682 90296807 -72303123 + MER4C LTR ERV1 291 446 -19 1145 259 31 62 chrX 90296808 90297325 -72302605 - MLT1D LTR MaLR -4 501 1 1354 203 130 27 chrX 90297553 90297967 -72301963 - MSTB2 LTR MaLR 0 457 1 2029 130 0 20 chrX 90298302 90298619 -72301311 + AluSc SINE Alu 3 313 0 1749 266 100 38 chrX 90298737 90299363 -72300567 - L1ME3A LINE L1 -120 6050 5340 2312 72 3 3 chrX 90299363 90299653 -72300277 - AluSp SINE Alu -20 293 4 1749 266 100 38 chrX 90299653 90299843 -72300087 - L1ME3A LINE L1 -830 5340 5163 242 324 10 39 chrX 90300127 90300177 -72299753 + L2 LINE L2 3174 3221 -51 721 255 65 20 chrX 90300177 90300424 -72299506 - MIR SINE MIR 0 262 5 242 324 10 39 chrX 90300424 90300475 -72299455 + L2 LINE L2 3221 3272 0 201 321 19 0 chrX 90300523 90300576 -72299354 - MIR SINE MIR -208 54 1 332 352 19 25 chrX 90300641 90300800 -72299130 - MIR3 SINE MIR -36 172 15 1600 247 34 54 chrX 90302013 90302684 -72297246 - L1MC5 LINE L1 -34 7927 7270 463 229 45 32 chrX 90302881 90303038 -72296892 - L1MC5 LINE L1 -844 7117 6959 * 4656 262 81 22 chrX 90303031 90304761 -72295169 - L1MEc LINE L1 -4541 1855 25 450 227 77 68 chrX 90304785 90304930 -72295000 - L1MC5 LINE L1 -1004 6957 6808 4190 58 51 9 chrX 90304930 90305497 -72294433 - LTR10C LTR ERV1 0 591 1 450 227 77 68 chrX 90305497 90305571 -72294359 - L1MC5 LINE L1 -1153 6808 6736 207 167 0 0 chrX 90305758 90305800 -72294130 + (CA)n Simple_repeat Simple_repeat 2 43 0 2165 119 50 19 chrX 90305859 90306221 -72293709 - THE1C LTR MaLR -2 373 1 21 57 0 0 chrX 90307608 90307643 -72292287 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chrX 90307722 90307748 -72292182 + AT_rich Low_complexity Low_complexity 1 26 0 180 111 0 0 chrX 90308202 90308229 -72291701 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 511 246 90 19 chrX 90310081 90310292 -72289638 + L1MC5 LINE L1 7729 7954 -7 2158 116 3 0 chrX 90310354 90310657 -72289273 - AluSg SINE Alu -5 305 2 21 36 0 0 chrX 90310925 90310953 -72288977 + AT_rich Low_complexity Low_complexity 1 28 0 2657 238 63 28 chrX 90311992 90312016 -72287914 - L1ME1 LINE L1 -19 6147 6125 1472 194 0 46 chrX 90312016 90312341 -72287589 + AluJo SINE Alu 2 311 -1 2657 238 63 28 chrX 90312341 90313144 -72286786 - L1ME1 LINE L1 -41 6125 5291 256 207 138 23 chrX 90313155 90313193 -72286737 - L1MC5 LINE L1 -1997 5811 5779 2482 111 5 19 chrX 90313193 90313562 -72286368 - THE1B LTR MaLR 0 364 1 256 207 138 23 chrX 90313562 90313610 -72286320 - L1MC5 LINE L1 -2029 5779 5715 537 322 25 4 chrX 90313752 90313997 -72285933 - L1ME4a LINE L1 -232 5889 5640 1824 138 3 18 chrX 90314045 90314327 -72285603 - AluJb SINE Alu -32 280 3 22 35 0 0 chrX 90314332 90314361 -72285569 + AT_rich Low_complexity Low_complexity 1 29 0 598 298 113 11 chrX 90316502 90316857 -72283073 - L2 LINE L2 -190 3123 2723 229 238 0 57 chrX 90317237 90317342 -72282588 + L1MC4 LINE L1 6605 6703 -1339 228 197 0 16 chrX 90317300 90317361 -72282569 - L1MC4 LINE L1 -1339 6703 6644 * 399 113 0 0 chrX 90317709 90317771 -72282159 + (CA)n Simple_repeat Simple_repeat 2 63 0 180 0 0 0 chrX 90317956 90317976 -72281954 + (T)n Simple_repeat Simple_repeat 1 20 0 466 333 130 0 chrX 90318422 90318614 -72281316 - MIR SINE MIR -10 252 36 198 0 0 0 chrX 90318876 90318898 -72281032 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 487 323 96 50 chrX 90318906 90319344 -72280586 - L2 LINE L2 -46 3267 2742 2347 83 0 22 chrX 90319718 90320032 -72279898 + AluSx SINE Alu 1 307 -5 243 61 0 0 chrX 90320194 90320227 -72279703 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1161 128 10 5 chrX 90320302 90320497 -72279433 - L1MA1 LINE L1 -138 6164 5969 857 265 98 8 chrX 90320586 90320820 -72279110 + MIR SINE MIR 5 259 -3 2431 172 129 2 chrX 90322298 90322834 -72277096 - L1MB7 LINE L1 -13 6171 5568 271 236 48 109 chrX 90322856 90323021 -72276909 - MIR SINE MIR -78 184 30 314 351 42 7 chrX 90323285 90323470 -72276460 + MIR SINE MIR 43 230 -32 1902 161 25 0 chrX 90324341 90324657 -72275273 + MER44D DNA MER2_type 5 598 -11 470 259 9 35 chrX 90326445 90326561 -72273369 + MIR3 SINE MIR 82 194 -14 423 296 28 42 chrX 90326900 90327258 -72272672 - L1MC4 LINE L1 0 8042 7690 1298 232 58 58 chrX 90327299 90327765 -72272165 - L1MC4 LINE L1 -480 7562 7097 520 249 40 40 chrX 90327784 90327985 -72271945 - L1MC5 LINE L1 -50 7911 7711 2034 118 7 26 chrX 90328947 90329251 -72270679 - AluSg SINE Alu -12 298 1 332 201 84 71 chrX 90330372 90330526 -72269404 - L1ME4a LINE L1 -2 6119 5964 1293 177 8 36 chrX 90330659 90330907 -72269023 + AluJo SINE Alu 35 275 -37 1149 300 48 33 chrX 90331114 90331718 -72268212 - L1ME4a LINE L1 -222 5948 5336 329 281 43 14 chrX 90331742 90331881 -72268049 - L1ME4a LINE L1 -856 5290 5148 358 290 11 0 chrX 90331948 90332041 -72267889 - L2 LINE L2 -6 3307 3214 1034 71 0 7 chrX 90332042 90332182 -72267748 + AluSp/q SINE Alu 172 310 -3 695 304 64 46 chrX 90332193 90332584 -72267346 - L2 LINE L2 -96 3217 2820 231 265 276 0 chrX 90332727 90332825 -72267105 - MIR SINE MIR -92 170 46 627 264 0 57 chrX 90332873 90333066 -72266864 - MER5A DNA MER1_type -1 188 7 200 304 14 14 chrX 90333269 90333338 -72266592 + MER5B DNA MER1_type 12 80 -98 378 0 0 0 chrX 90334928 90334970 -72264960 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 367 229 33 46 chrX 90335280 90335298 -72264632 - L1MA10 LINE L1 -4 6330 6313 3263 223 60 14 chrX 90335298 90336253 -72263677 - L1ME2 LINE L1 -12 6152 5165 3451 130 5 27 chrX 90336255 90336816 -72263114 - MER101B LTR ERV1 0 570 22 493 259 107 20 chrX 90336817 90337213 -72262717 - L1P4 LINE L1 -707 5458 5039 519 279 82 53 chrX 90337322 90337734 -72262196 - L1ME4a LINE L1 -1 6120 5697 2276 191 122 20 chrX 90337766 90338325 -72261605 - L1MC3 LINE L1 -42 7743 7128 671 246 171 26 chrX 90338734 90338962 -72260968 + MIR SINE MIR 2 262 0 253 278 43 64 chrX 90339194 90339381 -72260549 - HAL1 LINE L1 -100 2407 2225 510 275 81 33 chrX 90339525 90339736 -72260194 - L1ME4a LINE L1 -513 5608 5388 610 285 95 16 chrX 90339760 90340002 -72259928 + MIR SINE MIR 2 262 0 752 325 118 23 chrX 90340028 90340806 -72259124 - L1ME4a LINE L1 -822 5324 4473 263 306 25 66 chrX 90341140 90341261 -72258669 + MIR SINE MIR 58 173 -89 2814 174 19 54 chrX 90341396 90342021 -72257909 + MER6A DNA MER2_type 3 605 0 30 0 0 0 chrX 90342489 90342519 -72257411 + AT_rich Low_complexity Low_complexity 1 30 0 312 212 50 30 chrX 90343143 90343242 -72256688 + L1M4 LINE L1 3084 3184 -2962 327 265 60 26 chrX 90344587 90344704 -72255226 - MIR SINE MIR -44 218 98 23 0 0 0 chrX 90345027 90345050 -72254880 + AT_rich Low_complexity Low_complexity 1 23 0 451 196 31 0 chrX 90345155 90345252 -72254678 - MER113 DNA MER1_type? -421 100 1 230 177 97 16 chrX 90345257 90345319 -72254611 - MIR SINE MIR -111 151 85 438 53 0 0 chrX 90346513 90346570 -72253360 + (TG)n Simple_repeat Simple_repeat 1 57 0 659 234 143 0 chrX 90346727 90346902 -72253028 - MIR SINE MIR -2 260 61 289 280 21 105 chrX 90346947 90347090 -72252840 - MIR3 SINE MIR -64 144 14 195 69 0 0 chrX 90347601 90347630 -72252300 + (GA)n Simple_repeat Simple_repeat 1 29 0 9082 205 20 36 chrX 90348306 90349949 -72249981 + L1MA2 LINE L1 2293 3960 -3763 222 116 0 0 chrX 90349949 90349992 -72249938 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 9082 205 20 36 chrX 90349992 90350949 -72248981 + L1MA2 LINE L1 3960 4930 -2793 1816 152 0 4 chrX 90350949 90351218 -72248712 - MER1B DNA MER1_type -71 268 1 9082 205 20 36 chrX 90351218 90354115 -72245815 + L1MA2 LINE L1 4930 7723 0 263 167 141 51 chrX 90356377 90356455 -72243475 + L2 LINE L2 3228 3312 -1 2831 6 0 0 chrX 90357741 90358052 -72241878 - AluYa5 SINE Alu 0 311 1 242 218 0 0 chrX 90358526 90358581 -72241349 + L1MC4 LINE L1 6648 6702 -1340 4976 129 66 47 chrX 90358592 90359564 -72240366 + Tigger3b DNA MER2_type 10 999 -232 947 188 0 0 chrX 90359565 90359714 -72240216 + AluJb SINE Alu 145 293 -19 482 203 25 17 chrX 90359736 90359854 -72240076 + L1MC/D LINE L1 5625 5743 -616 1348 231 39 60 chrX 90360467 90360987 -72238943 - L1ME2 LINE L1 -31 6133 5625 1526 171 3 38 chrX 90361009 90361301 -72238629 - AluJo SINE Alu -19 293 12 1333 229 74 3 chrX 90361323 90361703 -72238227 - L1ME2 LINE L1 -1207 4939 4533 266 273 0 0 chrX 90361730 90361796 -72238134 - L1ME2 LINE L1 -1594 4552 4487 472 200 11 0 chrX 90361890 90361985 -72237945 - L1MA4A LINE L1 -25 6278 6183 1620 159 3 10 chrX 90361990 90362285 -72237645 - L1MA4A LINE L1 -188 6115 5823 2599 249 37 23 chrX 90362315 90363183 -72236747 - L1ME2 LINE L1 -2962 3184 2305 680 174 67 34 chrX 90363206 90363292 -72236638 + MLT1B LTR MaLR 3 98 -292 1479 216 27 3 chrX 90363292 90363593 -72236337 + AluJo SINE Alu 1 308 -4 680 174 67 34 chrX 90363593 90363655 -72236275 + MLT1B LTR MaLR 98 156 -234 276 146 0 0 chrX 90363640 90363688 -72236242 - MADE1 DNA Mariner -32 48 1 * 184 339 116 27 chrX 90365396 90365456 -72234474 - MIR SINE MIR -43 219 166 2985 222 17 5 chrX 90365456 90366101 -72233829 + MER82 DNA MER2_type 1 653 0 184 339 116 27 chrX 90366101 90366152 -72233778 - MIR SINE MIR -96 166 98 1327 209 32 44 chrX 90366546 90366862 -72233068 - AluJo SINE Alu 0 312 1 1009 194 16 41 chrX 90368363 90368605 -72231325 - MER106A DNA MER1_type 0 236 1 414 224 27 27 chrX 90369986 90370030 -72229900 - L1MA10 LINE L1 -14 6320 6277 2232 244 51 39 chrX 90370030 90370654 -72229276 - L1ME1 LINE L1 -48 6118 5482 1782 210 66 52 chrX 90370654 90371198 -72228732 - MLT2B3 LTR ERVL 0 554 3 2232 244 51 39 chrX 90371198 90371294 -72228636 - L1ME1 LINE L1 -684 5482 5389 2170 131 34 26 chrX 90371294 90371676 -72228254 - L1PA15 LINE L1 -6 6159 5775 225 108 0 0 chrX 90371691 90371728 -72228202 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 5197 164 25 21 chrX 90371728 90372543 -72227387 - L1PB3 LINE L1 -6 6148 5314 2330 75 14 0 chrX 90372543 90372838 -72227092 - AluY SINE Alu -12 299 1 5197 164 25 21 chrX 90372838 90373471 -72226459 - L1PB3 LINE L1 -840 5314 4685 2285 146 32 24 chrX 90373473 90373981 -72225949 + MLT2A2 LTR ERVL 2 514 -40 228 86 0 0 chrX 90374002 90374037 -72225893 + (TG)n Simple_repeat Simple_repeat 2 36 0 243 152 0 0 chrX 90374037 90374083 -72225847 + LTR66 LTR ERVL 394 439 -171 455 116 0 0 chrX 90374102 90374171 -72225759 + L1M4 LINE L1 4115 4183 -1963 383 93 0 0 chrX 90374181 90374235 -72225695 + MLT2A2 LTR ERVL 399 452 -1 3736 210 11 0 chrX 90374238 90375067 -72224863 - L1PB3 LINE L1 -1459 4687 3850 * 4068 188 3 15 chrX 90375064 90376423 -72223507 - L1PA15 LINE L1 -430 5736 4397 494 154 0 0 chrX 90376434 90376525 -72223405 + L1MA2 LINE L1 6057 6147 -157 1322 226 0 10 chrX 90376588 90376902 -72223028 - L1 LINE L1 -1763 4383 4073 * 2907 230 10 15 chrX 90376899 90377630 -72222300 + L1P LINE L1 3342 4068 -2078 21 57 0 0 chrX 90377752 90377787 -72222143 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chrX 90378923 90378946 -72220984 + AT_rich Low_complexity Low_complexity 1 23 0 880 197 70 66 chrX 90378947 90379191 -72220739 + L1PA16 LINE L1 5922 6166 0 328 208 75 0 chrX 90379185 90379291 -72220639 + L1M4 LINE L1 4623 4736 -1410 * 348 151 0 55 chrX 90379298 90379371 -72220559 + AluJ/FRAM SINE Alu 231 299 -3 2246 283 29 21 chrX 90379396 90380504 -72219426 - L1MEc LINE L1 -3927 2469 1353 1397 221 20 57 chrX 90380523 90380926 -72219004 + MLT1B LTR MaLR 1 388 -2 685 251 62 14 chrX 90380937 90381212 -72218718 - L1MEc LINE L1 -5067 1329 1042 4011 142 14 13 chrX 90381258 90381954 -72217976 - L1MA4A LINE L1 -15 6288 5592 6802 211 13 36 chrX 90381955 90382146 -72217784 - L1M2 LINE L1 -4775 2074 1880 872 149 0 26 chrX 90382146 90382300 -72217630 - L1PB4 LINE L1 -3 6153 6004 6802 211 13 36 chrX 90382300 90383537 -72216393 - L1M2 LINE L1 -4969 1880 680 2193 238 47 2 chrX 90383608 90384074 -72215856 - L1M2 LINE L1 -6362 487 1 684 220 0 0 chrX 90384094 90384212 -72215718 - FLAM_A SINE Alu -12 121 4 3220 136 0 4 chrX 90384236 90384735 -72215195 + L1PA15 LINE L1 5664 6160 -5 496 319 179 5 chrX 90386409 90386616 -72213314 - MIR SINE MIR -16 246 4 511 340 53 0 chrX 90386754 90386960 -72212970 - MIR SINE MIR 0 262 46 2204 174 31 15 chrX 90387435 90387920 -72212010 - L1PA16 LINE L1 -6 6159 5644 * 4463 262 14 23 chrX 90387919 90390004 -72209926 - L1PA12 LINE L1 -3325 4259 2182 355 293 0 0 chrX 90390244 90390343 -72209587 - L1PA12 LINE L1 -5398 2183 2085 956 350 34 37 chrX 90390400 90391068 -72208862 - L1PA12 LINE L1 -6121 1453 788 25 0 0 0 chrX 90392081 90392106 -72207824 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chrX 90392165 90392197 -72207733 + AT_rich Low_complexity Low_complexity 1 32 0 292 316 124 42 chrX 90392337 90392530 -72207400 + MER63A DNA MER1_type 1 209 -1 362 335 37 25 chrX 90392628 90392789 -72207141 + L2 LINE L2 2568 2730 -584 2462 230 26 1 chrX 90392859 90393520 -72206410 - L1P LINE L1 -2752 3394 2718 8425 150 20 41 chrX 90393533 90395016 -72204914 + THE1C-int LTR MaLR 129 1580 0 1627 170 58 30 chrX 90395017 90395381 -72204549 + THE1C LTR MaLR 2 375 0 305 104 0 0 chrX 90395386 90395434 -72204496 + L1PA15 LINE L1 5399 5446 -728 310 119 4 13 chrX 90395449 90395508 -72204422 - THE1C LTR MaLR -53 313 246 4027 150 28 3 chrX 90395516 90396202 -72203728 + L1PA15 LINE L1 5463 6165 0 22 0 0 89 chrX 90396241 90396286 -72203644 + AT_rich Low_complexity Low_complexity 1 41 0 378 351 11 48 chrX 90396299 90396487 -72203443 + MER5A DNA MER1_type 2 182 -7 356 293 113 0 chrX 90396547 90396653 -72203277 + MIR SINE MIR 72 189 -73 2775 169 24 0 chrX 90397009 90397543 -72202387 + L1MA4 LINE L1 5747 6293 -7 5162 101 27 65 chrX 90398138 90399182 -72200748 + L1PB1 LINE L1 5144 6151 0 1044 259 127 23 chrX 90399237 90399669 -72200261 - MLT1J LTR MaLR -34 477 1 534 279 0 36 chrX 90400265 90400430 -72199500 + MIR SINE MIR 32 190 -72 781 301 96 16 chrX 90400465 90400787 -72199143 + L1ME3 LINE L1 23 370 -6026 1842 272 49 35 chrX 90400790 90401657 -72198273 + L1ME3 LINE L1 485 1224 -4993 3381 253 57 19 chrX 90401673 90402616 -72197314 + L1PA12 LINE L1 6 984 -6597 3691 123 8 55 chrX 90402618 90403242 -72196688 - LTR25 LTR ERV1 -199 595 1 2790 207 15 27 chrX 90403248 90403924 -72196006 - HUERS-P3b LTR ERV1 -2 6994 6327 2410 81 7 3 chrX 90403925 90404235 -72195695 + AluY SINE Alu 1 311 0 5907 143 55 93 chrX 90404252 90405577 -72194353 - HUERS-P3b LTR ERV1 -970 6034 4770 2399 83 3 0 chrX 90405577 90405879 -72194051 + AluSp SINE Alu 1 303 -10 5907 143 55 93 chrX 90405879 90406138 -72193792 - HUERS-P3b LTR ERV1 -2234 4770 4503 13977 197 28 25 chrX 90406138 90409728 -72190202 - HUERS-P3b LTR ERV1 -3037 3959 259 355 179 12 71 chrX 90409732 90409816 -72190114 - HUERS-P3b LTR ERV1 -6905 91 13 2913 146 11 7 chrX 90409816 90410537 -72189393 - LTR25 LTR ERV1 0 794 5 15554 166 11 2 chrX 90410538 90414161 -72185769 + L1PA11 LINE L1 2537 6172 -2 2091 258 45 11 chrX 90414268 90414961 -72184969 + L1ME3 LINE L1 1519 2234 -4162 1570 232 119 44 chrX 90414973 90416209 -72183721 + L1ME3 LINE L1 4947 6203 -32 24 32 0 0 chrX 90416386 90416417 -72183513 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chrX 90416633 90416672 -72183258 + AT_rich Low_complexity Low_complexity 1 39 0 388 330 97 4 chrX 90416713 90416992 -72182938 + L1ME LINE L1 5496 5800 -321 224 284 40 20 chrX 90417104 90417252 -72182678 + (TATATG)n Simple_repeat Simple_repeat 6 156 0 32 75 0 0 chrX 90417374 90417441 -72182489 + AT_rich Low_complexity Low_complexity 1 67 0 25652 34 14 6 chrX 90417478 90421449 -72178481 - L1PA4 LINE L1 -1 6154 2150 2108 134 36 25 chrX 90422845 90423203 -72176727 - THE1B LTR MaLR 0 364 3 3772 133 18 5 chrX 90424286 90424909 -72175021 - L1MA1 LINE L1 0 6302 5672 11954 188 41 10 chrX 90424910 90429678 -72170252 - L1 LINE L1 -2667 4898 15 25 31 0 0 chrX 90430098 90430130 -72169800 + AT_rich Low_complexity Low_complexity 1 32 0 484 283 7 0 chrX 90430257 90430395 -72169535 - MIR SINE MIR 0 262 124 22 35 0 0 chrX 90430597 90430626 -72169304 + AT_rich Low_complexity Low_complexity 1 29 0 378 234 95 51 chrX 90431678 90431815 -72168115 + MIR SINE MIR 104 246 -16 21 0 0 0 chrX 90433227 90433248 -72166682 + AT_rich Low_complexity Low_complexity 1 21 0 203 290 67 101 chrX 90434347 90434585 -72165345 + L2 LINE L2 1676 1905 -1409 415 259 54 0 chrX 90434612 90434724 -72165206 + MIR SINE MIR 51 168 -94 183 42 0 0 chrX 90434724 90434748 -72165182 + (TTG)n Simple_repeat Simple_repeat 2 25 0 271 145 0 116 chrX 90434750 90434819 -72165111 - AluJo SINE Alu -10 292 232 1221 188 0 26 chrX 90434832 90435061 -72164869 - AluJo SINE Alu -67 245 23 476 308 6 24 chrX 90435337 90435506 -72164424 + MIR SINE MIR 48 213 -49 371 317 70 21 chrX 90435482 90435668 -72164262 - L2 LINE L2 0 3313 3119 * 2680 162 8 23 chrX 90435690 90436171 -72163759 + THE1C-int LTR MaLR 1107 1580 0 1706 170 50 19 chrX 90436171 90436535 -72163395 + THE1C LTR MaLR 1 375 0 11387 186 42 6 chrX 90436535 90440869 -72159061 - L1PBa LINE L1 -1257 5605 1119 8559 170 29 17 chrX 90440884 90443806 -72156124 - L1 LINE L1 -1955 5610 2645 246 348 67 22 chrX 90443810 90443945 -72155985 - MIR3 SINE MIR -57 151 11 3651 191 76 64 chrX 90443965 90444021 -72155909 - L1MC2 LINE L1 -22 6322 6268 2322 67 0 54 chrX 90444021 90444336 -72155594 + AluY SINE Alu 1 298 -13 3651 191 76 64 chrX 90444336 90445344 -72154586 - L1MC2 LINE L1 -76 6268 5246 228 86 0 0 chrX 90445337 90445372 -72154558 - L1M4 LINE L1 -738 5440 5406 * 1231 135 47 9 chrX 90445640 90445855 -72154075 + L1PA11 LINE L1 5948 6170 -4 612 253 75 11 chrX 90447629 90447815 -72152115 + MIR SINE MIR 15 212 -50 228 318 112 19 chrX 90448215 90448322 -72151608 - MER5A DNA MER1_type -17 167 45 548 209 0 0 chrX 90448339 90448430 -72151500 + FLAM_A SINE Alu 6 96 -46 216 245 0 20 chrX 90448457 90448506 -72151424 + MER5A DNA MER1_type 139 186 -3 5418 183 21 17 chrX 90448901 90450900 -72149030 + L1PA16 LINE L1 4125 6165 -1 344 276 88 93 chrX 90450978 90451409 -72148521 + MLT1H LTR MaLR 104 532 -17 234 0 0 0 chrX 90451503 90451529 -72148401 + (CA)n Simple_repeat Simple_repeat 2 27 0 195 42 0 0 chrX 90451529 90451553 -72148377 + (GA)n Simple_repeat Simple_repeat 1 24 0 426 297 81 18 chrX 90451962 90452321 -72147609 - L1P3 LINE L1 -387 5785 5386 1176 180 26 0 chrX 90452322 90452550 -72147380 - L1PA16 LINE L1 0 6166 5933 4193 179 56 20 chrX 90452573 90452882 -72147048 + L1MC1 LINE L1 4639 4935 -1398 2181 66 44 4 chrX 90452882 90453190 -72146740 + AluY SINE Alu 1 319 0 4193 179 56 20 chrX 90453190 90453889 -72146041 + L1MC1 LINE L1 4935 5713 -620 858 150 39 6 chrX 90453889 90454069 -72145861 + L1MA4A LINE L1 6118 6303 0 4193 179 56 20 chrX 90454069 90454477 -72145453 + L1MC1 LINE L1 5713 6105 -228 1281 155 5 0 chrX 90455006 90455225 -72144705 + L1MC1 LINE L1 6103 6322 -11 2077 117 11 0 chrX 90455230 90455574 -72144356 + AluSq SINE Alu 1 347 0 230 330 43 11 chrX 90455589 90455683 -72144247 - L2 LINE L2 -1285 2029 1933 669 215 45 25 chrX 90456221 90456282 -72143648 - MER3 DNA MER1_type -5 204 146 1513 214 7 3 chrX 90456282 90456585 -72143345 + AluJb SINE Alu 1 304 -8 669 215 45 25 chrX 90456585 90456723 -72143207 - MER3 DNA MER1_type -63 146 1 6011 149 40 48 chrX 90457538 90458779 -72141151 - Tigger3b DNA MER2_type 0 1231 1 21 0 0 0 chrX 90458794 90458815 -72141115 + AT_rich Low_complexity Low_complexity 1 21 0 2558 51 0 22 chrX 90458826 90459139 -72140791 + AluY SINE Alu 3 308 -3 359 244 16 63 chrX 90459336 90459463 -72140467 + MER103 DNA DNA 1 121 -45 23 33 0 0 chrX 90459610 90459640 -72140290 + AT_rich Low_complexity Low_complexity 1 30 0 232 239 0 0 chrX 90459684 90459730 -72140200 + GA-rich Low_complexity Low_complexity 2 47 0 1170 216 52 4 chrX 90459851 90460082 -72139848 - MLT1H1 LTR MaLR -60 495 254 347 236 81 32 chrX 90461526 90461649 -72138281 - L1ME LINE L1 -496 5625 5497 22 0 0 0 chrX 90463029 90463051 -72136879 + AT_rich Low_complexity Low_complexity 1 22 0 4663 93 58 51 chrX 90463066 90464114 -72135816 - MER11A LTR ERVK 0 1266 1 306 261 126 36 chrX 90464385 90464496 -72135434 - L2 LINE L2 0 3313 3193 264 295 39 13 chrX 90464493 90464571 -72135359 + L2 LINE L2 3188 3267 -5 * 249 33 0 0 chrX 90464636 90464666 -72135264 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 669 49 29 0 chrX 90464688 90464790 -72135140 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 1966 161 103 3 chrX 90464792 90465170 -72134760 - MLT2C2 LTR ERVL -48 416 1 615 247 118 57 chrX 90466277 90466540 -72133390 - L2 LINE L2 0 3313 3035 202 215 25 0 chrX 90466559 90466638 -72133292 + (TA)n Simple_repeat Simple_repeat 1 81 0 269 220 34 17 chrX 90466649 90466708 -72133222 - MER5A DNA MER1_type -69 120 61 187 245 43 128 chrX 90466703 90466891 -72133039 + L2 LINE L2 1639 1810 -1504 * 225 0 0 0 chrX 90467476 90467501 -72132429 + (TG)n Simple_repeat Simple_repeat 2 26 0 3313 171 10 6 chrX 90468746 90469684 -72130246 - L1M2 LINE L1 -580 5720 4777 2114 166 36 11 chrX 90469805 90470250 -72129680 + L1MA4 LINE L1 5840 6295 -5 225 65 0 0 chrX 90472772 90472803 -72127127 + (TG)n Simple_repeat Simple_repeat 2 32 0 585 86 11 0 chrX 90473016 90473109 -72126821 + L1P4 LINE L1 5337 5430 -736 * 708 206 7 0 chrX 90473106 90473261 -72126669 + L1PA13 LINE L1 3392 3547 -2599 3157 139 3 28 chrX 90473270 90473403 -72126527 + L1PA13 LINE L1 5192 5327 -834 2420 93 3 0 chrX 90473403 90473705 -72126225 + AluSp SINE Alu 1 303 -10 3157 139 3 28 chrX 90473705 90474176 -72125754 + L1PA13 LINE L1 5327 5782 -379 38151 37 0 1 chrX 90474177 90479487 -72120443 + L1P LINE L1 1 5305 -841 7649 26 0 0 chrX 90479587 90480538 -72119392 + L1PA2 LINE L1 5202 6152 -3 1814 176 40 3 chrX 90480570 90480816 -72119114 + L1PA13 LINE L1 5769 6035 -128 180 0 0 0 chrX 90480816 90480836 -72119094 + (CA)n Simple_repeat Simple_repeat 1 20 0 1814 176 40 3 chrX 90480836 90480965 -72118965 + L1PA13 LINE L1 6035 6158 -5 963 35 0 0 chrX 90480973 90481088 -72118842 + L1PA3 LINE L1 6041 6155 0 2307 80 10 3 chrX 90481101 90481402 -72118528 + AluSq SINE Alu 1 303 -10 3660 159 38 8 chrX 90481404 90482109 -72117821 + L1PA16 LINE L1 5432 6157 -9 464 357 31 34 chrX 90482126 90482417 -72117513 + L2 LINE L2 1797 2086 -1228 2374 144 2 10 chrX 90482593 90482990 -72116940 + L1PA11 LINE L1 5773 6166 -8 2096 112 0 7 chrX 90482991 90483308 -72116622 + AluSp SINE Alu 1 315 0 214 297 72 0 chrX 90483406 90483477 -72116453 + MIR SINE MIR 75 149 -65 24 0 0 0 chrX 90483579 90483603 -72116327 + AT_rich Low_complexity Low_complexity 1 24 0 181 360 12 0 chrX 90484367 90484453 -72115477 + L2 LINE L2 2459 2545 -769 1331 103 125 0 chrX 90484466 90484690 -72115240 - MER4A-int LTR ERV1 -6346 252 1 1507 145 17 41 chrX 90484692 90485044 -72114886 - MER4A LTR ERV1 0 664 263 496 93 12 35 chrX 90485044 90485130 -72114800 - MER4A LTR ERV1 -566 98 15 1507 182 20 0 chrX 90485136 90485432 -72114498 - L1PA16 LINE L1 -119 6047 5746 468 154 0 11 chrX 90485447 90485538 -72114392 - L1 LINE L1 -1419 5430 5341 6226 210 34 26 chrX 90485557 90486296 -72113634 - L1PA16 LINE L1 -440 5726 4995 2051 147 0 3 chrX 90486296 90486603 -72113327 - AluSx SINE Alu -3 309 4 6226 210 34 26 chrX 90486603 90488177 -72111753 - L1PA16 LINE L1 -1171 4995 3405 2298 155 3 11 chrX 90488177 90488544 -72111386 + THE1B LTR MaLR 1 364 0 8699 109 12 133 chrX 90488545 90489044 -72110886 + THE1B-int LTR MaLR 2 560 -1020 1442 77 0 0 chrX 90489044 90489226 -72110704 + AluY SINE Alu 124 305 -6 8699 109 12 133 chrX 90489226 90490339 -72109591 + THE1B-int LTR MaLR 560 1578 -2 2483 130 6 0 chrX 90490341 90490703 -72109227 + THE1B LTR MaLR 1 364 0 2921 225 26 62 chrX 90490705 90491280 -72108650 - L1 LINE L1 -2739 4110 3593 747 169 0 0 chrX 90491280 90491416 -72108514 - L1MA2 LINE L1 0 6304 6169 2921 225 26 62 chrX 90491416 90491950 -72107980 - L1 LINE L1 -3256 3593 3041 2143 141 0 22 chrX 90491952 90492313 -72107617 + MLT2A2 LTR ERVL 2 354 -99 288 0 0 0 chrX 90492432 90492464 -72107466 + (TG)n Simple_repeat Simple_repeat 2 33 0 281 119 0 0 chrX 90492464 90492506 -72107424 + MLT2A2 LTR ERVL 403 444 0 39819 95 6 3 chrX 90492506 90498145 -72101785 + HERVL-A2-A2 LTR ERVL 1 5654 0 2940 117 44 2 chrX 90498145 90498580 -72101350 + MLT2A2 LTR ERVL 1 453 0 3624 231 127 8 chrX 90498591 90499960 -72099970 - L1PBb LINE L1 -3816 3033 1427 2669 78 0 0 chrX 90500489 90500833 -72099097 + LTR14A LTR ERVK 1 344 0 2757 230 40 40 chrX 90500837 90501454 -72098476 - L1PBb LINE L1 -6143 706 87 2186 91 10 7 chrX 90501454 90501751 -72098179 - AluY SINE Alu -13 298 1 2757 230 40 40 chrX 90501751 90501838 -72098092 - L1PBb LINE L1 -6761 88 2 25 0 0 0 chrX 90502192 90502217 -72097713 + AT_rich Low_complexity Low_complexity 1 25 0 437 303 11 22 chrX 90502218 90502403 -72097527 - L1MC4a LINE L1 -1937 5871 5689 2219 188 76 8 chrX 90503203 90503704 -72096226 + L1MA4A LINE L1 5576 6110 -193 465 194 10 0 chrX 90503710 90503808 -72096122 + L1MA4A LINE L1 6181 6279 -24 1117 182 100 62 chrX 90503820 90504111 -72095819 + AluJo SINE Alu 1 302 0 23 0 0 0 chrX 90504665 90504688 -72095242 + AT_rich Low_complexity Low_complexity 1 23 0 780 326 84 26 chrX 90504996 90505425 -72094505 + L2 LINE L2 2847 3300 -13 502 239 170 11 chrX 90505413 90505601 -72094329 - MIR SINE MIR 0 262 45 * 472 208 153 14 chrX 90505816 90505960 -72093970 - MIR SINE MIR -19 243 80 349 222 0 52 chrX 90506003 90506138 -72093792 + MER104 DNA Tc2 36 163 -17 8749 154 30 27 chrX 90506387 90506898 -72093032 - L1P LINE L1 -1105 5356 4848 2340 110 0 3 chrX 90506898 90507208 -72092722 - AluSq SINE Alu 0 313 5 8749 154 30 27 chrX 90507208 90508426 -72091504 - L1P LINE L1 -1613 4848 3622 777 199 46 51 chrX 90508426 90508622 -72091308 + pTR5 LTR ERV1 744 938 -1500 6079 228 25 54 chrX 90508623 90511471 -72088459 - L1P3 LINE L1 -3667 2794 10 511 293 44 24 chrX 90511849 90512054 -72087876 + MER63A DNA MER1_type 2 210 0 705 184 41 41 chrX 90512246 90512393 -72087537 - MER20 DNA MER1_type -44 175 29 186 71 0 0 chrX 90512414 90512442 -72087488 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 207 0 0 0 chrX 90512992 90513015 -72086915 + (TC)n Simple_repeat Simple_repeat 2 24 0 23 97 0 0 chrX 90514745 90514817 -72085113 + AT_rich Low_complexity Low_complexity 1 72 0 222 300 0 17 chrX 90515141 90515201 -72084729 - L2 LINE L2 -9 3263 3205 1081 240 8 0 chrX 90515594 90515840 -72084090 - MLT1A1 LTR MaLR 0 365 118 419 73 0 0 chrX 90515840 90515895 -72084035 - HERV17 LTR ERV1 -8571 55 1 6199 53 16 3 chrX 90515895 90516665 -72083265 - LTR17 LTR ERV1 0 780 1 6138 112 93 3 chrX 90516665 90517871 -72082059 - L1PBa LINE L1 -3802 3060 1745 1767 127 28 0 chrX 90517863 90518154 -72081776 + L1PBa LINE L1 865 1163 -5700 * 2126 126 6 0 chrX 90518185 90518518 -72081412 + L1PBa LINE L1 1400 1734 -5129 21 0 0 0 chrX 90519019 90519040 -72080890 + AT_rich Low_complexity Low_complexity 1 21 0 837 268 49 15 chrX 90519149 90519414 -72080516 + MLT1H LTR MaLR 18 291 -258 555 225 14 14 chrX 90519496 90519634 -72080296 + MLT1H LTR MaLR 412 549 0 325 302 38 25 chrX 90519709 90519868 -72080062 - L2 LINE L2 -27 3286 3126 318 295 83 26 chrX 90519883 90520039 -72079891 - L2 LINE L2 -1532 1782 1618 186 294 165 0 chrX 90520575 90520660 -72079270 + MIR SINE MIR 35 133 -75 206 32 32 0 chrX 90520768 90520799 -72079131 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9799 191 7 22 chrX 90520898 90522107 -72077823 + L1PA8 LINE L1 3 1228 -5233 369 0 0 0 chrX 90522107 90522148 -72077782 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2213 96 0 0 chrX 90522148 90522478 -72077452 + AluY SINE Alu 1 330 0 9799 191 7 22 chrX 90522478 90524554 -72075376 + L1PA8 LINE L1 1226 3307 -3154 6648 128 9 2 chrX 90524558 90526433 -72073497 + L1PA8 LINE L1 4605 6486 -1 225 317 114 24 chrX 90527070 90527193 -72072737 - L2 LINE L2 0 3272 3139 279 280 16 124 chrX 90527396 90527589 -72072341 + MLT1I LTR MaLR 161 332 -77 435 341 46 29 chrX 90527982 90528155 -72071775 - MIR3 SINE MIR -2 206 31 427 325 162 0 chrX 90528227 90528418 -72071512 - MIR SINE MIR -27 235 14 335 356 7 14 chrX 90529398 90529544 -72070386 + MIR SINE MIR 21 165 -97 1320 277 92 50 chrX 90529555 90530289 -72069641 - L2 LINE L2 -1 3271 2214 299 326 0 0 chrX 90530267 90530353 -72069577 + MIR SINE MIR 169 254 -8 * 25 0 0 0 chrX 90530563 90530588 -72069342 + AT_rich Low_complexity Low_complexity 1 25 0 4559 133 8 13 chrX 90530588 90531361 -72068569 - L1MA2 LINE L1 0 6304 5536 16519 192 53 20 chrX 90531361 90537128 -72062802 - L1PA13 LINE L1 -94 7488 1103 454 189 47 31 chrX 90537120 90537247 -72062683 - L1M1 LINE L1 -7428 137 9 * 867 207 35 0 chrX 90537511 90537685 -72062245 - MER58A DNA MER1_type 0 224 45 1425 208 51 25 chrX 90537786 90538142 -72061788 - MLT1A1 LTR MaLR 0 365 1 951 291 38 9 chrX 90538256 90538600 -72061330 - L1MC4a LINE L1 -1943 5865 5512 569 178 0 0 chrX 90538618 90538708 -72061222 - U6 snRNA snRNA -17 90 1 180 0 0 0 chrX 90539152 90539172 -72060758 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1397 168 0 50 chrX 90539250 90539378 -72060552 - Tigger5 DNA MER2_type 0 2323 2215 2066 139 24 32 chrX 90539378 90539752 -72060178 + THE1C LTR MaLR 5 375 0 1397 168 0 50 chrX 90539752 90539903 -72060027 - Tigger5 DNA MER2_type -108 2215 2058 308 299 94 8 chrX 90539928 90540045 -72059885 - MIR SINE MIR -17 245 119 15032 108 10 78 chrX 90540071 90542663 -72057267 - HUERS-P1 LTR ERV1 -3847 2416 1 3649 123 0 18 chrX 90542663 90543206 -72056724 - LTR8 LTR ERV1 0 691 159 2123 135 0 0 chrX 90543215 90543511 -72056419 - AluSx SINE Alu -13 299 4 2122 74 37 106 chrX 90543544 90543681 -72056249 - PABL_B LTR ERV1 -316 351 206 2107 103 4 7 chrX 90543681 90543962 -72055968 + AluSp SINE Alu 7 286 -27 270 0 0 0 chrX 90543967 90543997 -72055933 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2122 74 37 106 chrX 90543997 90544134 -72055796 - PABL_B LTR ERV1 -465 202 101 2122 118 3 10 chrX 90544134 90544447 -72055483 - AluSp SINE Alu 0 313 3 2122 74 37 106 chrX 90544447 90544542 -72055388 - PABL_B LTR ERV1 -566 101 1 46656 136 16 20 chrX 90544542 90550338 -72049592 - PABL_B-int LTR ERV1 0 7122 1326 229 111 0 0 chrX 90550338 90550374 -72049556 + U2 snRNA snRNA 1 36 -152 46656 136 16 20 chrX 90550374 90551694 -72048236 - PABL_B-int LTR ERV1 -5796 1326 2 4657 104 5 10 chrX 90551695 90552366 -72047564 - PABL_B LTR ERV1 0 667 1 2062 148 8 40 chrX 90552375 90552746 -72047184 + THE1C LTR MaLR 15 373 -2 863 142 7 0 chrX 90552747 90552895 -72047035 - Tigger5 DNA MER2_type -113 2210 2062 304 291 94 8 chrX 90552924 90553041 -72046889 - MIR SINE MIR -17 245 119 509 259 22 22 chrX 90554136 90554275 -72045655 - MIR SINE MIR -14 248 110 306 244 0 0 chrX 90554811 90554889 -72045041 - MER116 DNA Mariner -2 78 1 386 281 82 27 chrX 90555328 90555474 -72044456 + L2 LINE L2 3158 3311 -2 680 253 73 65 chrX 90555483 90555954 -72043976 - L1MC/D LINE L1 -298 5823 5349 458 174 31 31 chrX 90555951 90556100 -72043830 + L1ME2 LINE L1 5683 5831 -333 * 286 177 0 0 chrX 90556129 90556191 -72043739 - L1MA4A LINE L1 -5 6298 6237 1148 161 19 9 chrX 90556193 90556404 -72043526 - L1MA4 LINE L1 -215 6085 5873 395 239 37 37 chrX 90556836 90556945 -72042985 + MER81 DNA DNA 1 109 -5 350 268 45 9 chrX 90556952 90557064 -72042866 + MIR SINE MIR 125 240 -22 2613 158 19 6 chrX 90557167 90557647 -72042283 + L1MA4 LINE L1 5527 6012 -288 311 217 39 54 chrX 90557615 90557744 -72042186 + L1MB4 LINE L1 6053 6179 -1 * 213 228 10 40 chrX 90558230 90558331 -72041599 + (TAA)n Simple_repeat Simple_repeat 2 99 0 260 231 39 0 chrX 90558512 90558590 -72041340 - L1ME3A LINE L1 -232 5938 5858 670 104 30 52 chrX 90559354 90559489 -72040441 - Tigger7 DNA MER2_type -142 2345 2214 503 179 0 0 chrX 90559482 90559560 -72040370 - Tigger7 DNA MER2_type -520 185 108 * 396 75 0 0 chrX 90559557 90559610 -72040320 - MADE1 DNA Mariner -27 53 1 * 366 255 53 0 chrX 90559648 90559742 -72040188 - Tigger7 DNA MER2_type -606 99 1 267 273 35 0 chrX 90559743 90559844 -72040086 + L1ME4a LINE L1 1198 6040 -41 24 0 0 0 chrX 90560969 90560993 -72038937 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chrX 90560993 90561020 -72038910 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2180 90 4 0 chrX 90561021 90561300 -72038630 - AluSc SINE Alu -29 280 1 215 61 30 0 chrX 90561612 90561645 -72038285 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1134 189 43 30 chrX 90561647 90561880 -72038050 - MER46A DNA MER2_type 0 236 1 2172 107 0 0 chrX 90562143 90562434 -72037496 + AluSg SINE Alu 1 291 -19 521 256 1 4 chrX 90562437 90562584 -72037346 - L1ME1 LINE L1 0 6334 6033 674 294 127 3 chrX 90563631 90563930 -72036000 - L2 LINE L2 -44 3269 2934 1424 169 20 66 chrX 90563960 90564309 -72035621 + AluJo SINE Alu 24 358 0 756 317 26 15 chrX 90564310 90564581 -72035349 - L2 LINE L2 -449 2865 2592 209 273 0 0 chrX 90564581 90564636 -72035294 + L2 LINE L2 2907 2961 -311 899 292 8 23 chrX 90564788 90564855 -72035075 + MIR SINE MIR 7 74 -188 2433 189 31 4 chrX 90564855 90565310 -72034620 + MLT1C LTR MaLR 1 467 0 899 292 8 23 chrX 90565310 90565502 -72034428 + MIR SINE MIR 74 262 0 329 318 37 0 chrX 90565515 90565622 -72034308 + L2 LINE L2 3158 3268 -4 339 344 0 0 chrX 90565781 90565871 -72034059 + MIR3 SINE MIR 102 191 -17 258 272 33 128 chrX 90566364 90566426 -72033504 - MER5A DNA MER1_type -1 188 122 2270 76 0 0 chrX 90566426 90566703 -72033227 + AluY SINE Alu 16 292 -19 258 272 33 128 chrX 90566703 90566820 -72033110 - MER5A DNA MER1_type -67 122 26 30 45 0 0 chrX 90566853 90566897 -72033033 + AT_rich Low_complexity Low_complexity 1 44 0 271 114 0 0 chrX 90566973 90567017 -72032913 - L1MA9 LINE L1 -40 6272 6229 2264 102 0 13 chrX 90567041 90567356 -72032574 + AluY SINE Alu 1 311 0 445 281 78 100 chrX 90567611 90567985 -72031945 - MLT1I LTR MaLR -6 403 63 239 306 0 47 chrX 90568293 90568378 -72031552 + L2 LINE L2 3192 3272 0 531 187 0 9 chrX 90568861 90568968 -72030962 - FRAM SINE Alu -2 174 69 1355 185 105 33 chrX 90569823 90570185 -72029745 - MLT1B LTR MaLR -2 388 1 4684 184 35 19 chrX 90570726 90572278 -72027652 - L1MB1 LINE L1 -6 6162 4598 456 304 7 15 chrX 90572287 90572422 -72027508 - L1M3c LINE L1 -6005 136 3 328 304 20 31 chrX 90572426 90572634 -72027296 - L1M4 LINE L1 -747 5399 5193 22 0 0 0 chrX 90572641 90572663 -72027267 + AT_rich Low_complexity Low_complexity 1 22 0 1473 189 129 9 chrX 90572665 90572998 -72026932 - LOR1b LTR ERV1 -88 373 1 21 0 0 0 chrX 90573012 90573033 -72026897 + AT_rich Low_complexity Low_complexity 1 21 0 2220 56 0 4 chrX 90573033 90573301 -72026629 + AluY SINE Alu 38 304 -7 1405 241 30 48 chrX 90573949 90574028 -72025902 - L1ME3 LINE L1 -7 6155 6076 2096 196 13 0 chrX 90574028 90574426 -72025504 + MER57A LTR ERV1 1 403 0 1405 241 30 48 chrX 90574426 90574820 -72025110 - L1ME3 LINE L1 -86 6076 5691 2542 57 0 0 chrX 90574827 90575126 -72024804 + AluY SINE Alu 3 301 -10 867 130 28 51 chrX 90575133 90575310 -72024620 - L1MC1 LINE L1 -2 6331 6159 1333 188 129 26 chrX 90575310 90575650 -72024280 + THE1C LTR MaLR 1 375 0 9129 145 9 39 chrX 90575652 90577279 -72022651 + MSTA-int LTR MaLR 3 1580 0 1473 174 234 11 chrX 90577279 90577443 -72022487 + MSTA LTR MaLR 1 127 -301 180 0 0 0 chrX 90577443 90577463 -72022467 + (TC)n Simple_repeat Simple_repeat 1 20 0 1473 174 234 11 chrX 90577463 90577648 -72022282 + MSTA LTR MaLR 127 428 0 1356 215 31 62 chrX 90577649 90578068 -72021862 - L1MC1 LINE L1 -423 5910 5505 1491 170 29 22 chrX 90578554 90578895 -72021035 - MER4A LTR ERV1 0 664 263 557 135 21 10 chrX 90578895 90578991 -72020939 - MER4A LTR ERV1 -566 98 2 657 120 10 0 chrX 90579004 90579104 -72020826 - MER4A-int LTR ERV1 -6 6592 6492 * 2480 108 14 36 chrX 90579101 90579516 -72020414 - MER83B-int LTR ERV1 -2358 4240 3835 1236 187 34 45 chrX 90579516 90579895 -72020035 - MER83B-int LTR ERV1 -2920 3678 3304 1434 76 0 0 chrX 90579907 90580078 -72019852 + AluSq SINE Alu 1 171 -142 616 206 7 22 chrX 90580099 90580235 -72019695 - MER83B-int LTR ERV1 -559 4321 4188 1577 107 12 0 chrX 90580237 90580480 -72019450 + MER4-int LTR ERV1 1785 2030 -4568 790 199 88 59 chrX 90580479 90580785 -72019145 + pTR5 LTR ERV1 741 1055 -1383 * 4752 93 91 49 chrX 90580840 90581633 -72018297 + LTR12 LTR ERV1 1 826 0 2541 89 89 0 chrX 90581634 90582063 -72017867 + MER4-int LTR ERV1 2029 2495 -4103 1181 133 97 60 chrX 90582063 90582219 -72017711 - LTR8 LTR ERV1 -434 257 87 2123 110 3 0 chrX 90582219 90582511 -72017419 + AluSg SINE Alu 4 296 -14 1181 133 97 60 chrX 90582511 90582602 -72017328 - LTR8 LTR ERV1 -604 87 1 1221 130 108 71 chrX 90582602 90582653 -72017277 + MER4-int LTR ERV1 2737 2785 -3813 2172 128 0 0 chrX 90582653 90582957 -72016973 + AluSx SINE Alu 1 304 -8 1221 130 108 71 chrX 90582957 90583128 -72016802 + MER4-int LTR ERV1 2785 2948 -3650 2078 135 0 0 chrX 90583128 90583432 -72016498 - AluSg SINE Alu -6 304 1 1221 130 108 71 chrX 90583432 90583616 -72016314 + MER4-int LTR ERV1 2948 3159 -3439 * 5948 135 183 83 chrX 90583595 90584911 -72015019 - MER4A-int LTR ERV1 -4785 1813 296 183 42 0 0 chrX 90584911 90584935 -72014995 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5948 135 183 83 chrX 90584935 90585265 -72014665 - MER4A-int LTR ERV1 -6302 296 1 1750 144 6 51 chrX 90585268 90585630 -72014300 - MER4A LTR ERV1 0 664 261 604 113 21 10 chrX 90585630 90585727 -72014203 - MER4A LTR ERV1 -566 98 1 2294 87 0 23 chrX 90585787 90586097 -72013833 + AluY SINE Alu 5 307 -4 1984 100 64 8 chrX 90586842 90587215 -72012715 + LTR7 LTR ERV1 1 450 0 277 157 0 29 chrX 90587568 90587638 -72012292 + CT-rich Low_complexity Low_complexity 1 68 0 432 37 0 0 chrX 90588332 90588386 -72011544 + (TA)n Simple_repeat Simple_repeat 2 55 0 825 317 59 48 chrX 90589004 90589547 -72010383 + LTR38 LTR ERV1 1 549 -7 195 69 0 0 chrX 90589877 90589906 -72010024 + (CA)n Simple_repeat Simple_repeat 2 30 0 358 263 10 10 chrX 90590183 90590282 -72009648 + MIR SINE MIR 46 144 -118 180 0 0 0 chrX 90591023 90591043 -72008887 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 25 0 0 0 chrX 90591675 90591700 -72008230 + AT_rich Low_complexity Low_complexity 1 25 0 364 174 87 11 chrX 90591752 90591844 -72008086 - L1ME LINE L1 -465 5656 5558 357 307 80 20 chrX 90592562 90592712 -72007218 - MIR SINE MIR -55 207 49 189 259 296 28 chrX 90593448 90593556 -72006374 + MER5B DNA MER1_type 40 176 -2 1260 216 52 21 chrX 90593940 90594269 -72005661 + MER2 DNA MER2_type 1 339 -6 724 281 62 72 chrX 90595095 90595626 -72004304 + HAL1 LINE L1 1761 2286 -221 735 240 98 56 chrX 90595630 90595988 -72003942 - LTR50 LTR ERVL 0 795 423 303 355 26 20 chrX 90596042 90596194 -72003736 - LTR16B LTR ERVL -181 283 131 452 278 85 11 chrX 90596244 90596495 -72003435 - L2 LINE L2 -1007 2307 1954 273 240 62 93 chrX 90596535 90596636 -72003294 - L2 LINE L2 -1495 1819 1716 228 35 0 0 chrX 90596636 90596665 -72003265 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1499 177 0 0 chrX 90596670 90596913 -72003017 - AluSx SINE Alu -69 243 1 273 240 62 93 chrX 90596913 90596934 -72002996 - L2 LINE L2 -1602 1712 1695 4202 193 33 28 chrX 90596976 90598060 -72001870 + L1MA9 LINE L1 5189 6274 -38 245 269 13 13 chrX 90598100 90598178 -72001752 - L2 LINE L2 -1635 1679 1602 665 222 8 0 chrX 90598183 90598309 -72001621 + AluJb SINE Alu 1 127 -185 337 315 172 43 chrX 90598342 90598408 -72001522 - L2 LINE L2 -1753 1561 1505 2347 82 0 10 chrX 90598408 90598713 -72001217 + AluSc SINE Alu 1 302 -7 337 315 172 43 chrX 90598713 90598878 -72001052 - L2 LINE L2 -1809 1505 1300 396 336 14 14 chrX 90598932 90599072 -72000858 - MIR3 SINE MIR -64 144 5 242 346 26 32 chrX 90599577 90599733 -72000197 - MIR3 SINE MIR -31 177 23 349 309 34 34 chrX 90599855 90599957 -71999973 + MIR SINE MIR 52 153 -109 1663 131 37 113 chrX 90599957 90600363 -71999567 + THE1C LTR MaLR 1 375 0 349 309 34 34 chrX 90600363 90600464 -71999466 + MIR SINE MIR 152 255 -7 234 91 0 0 chrX 90600592 90600625 -71999305 + (T)n Simple_repeat Simple_repeat 1 33 0 205 319 84 17 chrX 90600793 90600912 -71999018 + MER5A DNA MER1_type 36 162 -27 40 49 0 0 chrX 90601318 90601379 -71998551 + AT_rich Low_complexity Low_complexity 1 61 0 1756 222 72 53 chrX 90601756 90602287 -71997643 + LTR38 LTR ERV1 2 542 -14 750 321 128 13 chrX 90602748 90603224 -71996706 + L2 LINE L2 1855 2385 -929 2318 77 17 7 chrX 90603638 90603936 -71995994 - AluSp SINE Alu -12 301 1 2291 110 0 0 chrX 90604027 90604337 -71995593 - AluSg SINE Alu 0 310 1 596 237 13 20 chrX 90604546 90604701 -71995229 + MLT1J2 LTR MaLR 15 166 -243 499 114 13 0 chrX 90605223 90605302 -71994628 - MADE1 DNA Mariner 0 80 1 2313 51 0 44 chrX 90605684 90606022 -71993908 + AluY SINE Alu 1 325 0 2450 148 21 30 chrX 90606835 90607267 -71992663 + MSTA LTR MaLR 1 428 0 541 357 16 36 chrX 90607610 90607862 -71992068 + MIR SINE MIR 3 249 -13 216 219 0 0 chrX 90608419 90608460 -71991470 + L2 LINE L2 3228 3268 -4 368 364 112 16 chrX 90608678 90608928 -71991002 - MLT1K LTR MaLR -192 396 123 2125 125 3 3 chrX 90609535 90609839 -71990091 - AluSg SINE Alu -6 304 1 491 266 55 15 chrX 90610097 90610261 -71989669 - MER5A DNA MER1_type 0 189 10 460 257 37 0 chrX 90610676 90610785 -71989145 - MIR SINE MIR -69 193 81 1723 170 141 24 chrX 90611357 90611527 -71988403 + MSTA LTR MaLR 1 150 -278 2404 85 0 0 chrX 90611527 90611820 -71988110 + AluSc SINE Alu 1 293 -16 1723 170 141 24 chrX 90611820 90612032 -71987898 + MSTA LTR MaLR 150 428 0 3180 199 51 6 chrX 90612032 90612696 -71987234 + MSTA-int LTR MaLR 1 694 -957 * 4969 172 26 5 chrX 90612695 90614073 -71985857 + L1MA4 LINE L1 4801 6200 -100 1569 134 0 4 chrX 90614162 90614401 -71985529 - L1PB3 LINE L1 -1 6153 5916 6056 103 64 1 chrX 90614401 90615272 -71984658 - HERVL LTR ERVL -1085 4569 3644 283 140 193 0 chrX 90615282 90615339 -71984591 - L1PB3 LINE L1 -234 5920 5853 1087 203 239 23 chrX 90615339 90615649 -71984281 + MSTB LTR MaLR 50 426 0 1436 122 8 42 chrX 90615782 90616020 -71983910 - MER1A DNA MER1_type -7 522 293 2475 226 11 8 chrX 90616020 90616634 -71983296 - L1PB1 LINE L1 -904 5242 4627 6069 107 8 0 chrX 90616649 90617539 -71982391 + L1PB1 LINE L1 5254 6150 -1 1989 165 0 9 chrX 90617553 90617869 -71982061 - MER1A DNA MER1_type -216 313 1 244 305 11 32 chrX 90617869 90617964 -71981966 + MIR SINE MIR 162 254 -8 1343 209 32 0 chrX 90618248 90618501 -71981429 - AluJo SINE Alu -21 291 31 869 115 6 1 chrX 90618670 90618809 -71981121 + L1MA5 LINE L1 5855 5938 -236 3387 154 11 2 chrX 90618972 90619524 -71980406 + MER41D LTR ERV1 1 557 0 7405 30 7 0 chrX 90620310 90621648 -71978282 - L1PA5 LINE L1 -5 6149 4806 31 76 0 0 chrX 90622286 90622352 -71977578 + AT_rich Low_complexity Low_complexity 1 66 0 406 306 52 8 chrX 90622433 90622567 -71977363 + MER5A DNA MER1_type 50 189 0 2347 143 14 2 chrX 90622823 90623242 -71976688 + L1MA5 LINE L1 5874 6297 -3 349 290 71 24 chrX 90623908 90624025 -71975905 + MIR SINE MIR 79 208 -54 1494 220 30 30 chrX 90624025 90624388 -71975542 - MLT1A1 LTR MaLR -2 363 1 349 290 71 24 chrX 90624388 90624439 -71975491 + MIR SINE MIR 208 255 -7 244 232 24 49 chrX 90624611 90624693 -71975237 - MIR SINE MIR 0 262 183 24 53 0 0 chrX 90624863 90624901 -71975029 + AT_rich Low_complexity Low_complexity 1 38 0 1651 218 61 46 chrX 90626991 90627469 -71972461 + MLT1D LTR MaLR 1 485 -20 1008 154 34 99 chrX 90627730 90627963 -71971967 - MER20 DNA MER1_type -1 218 1 2253 82 0 0 chrX 90628625 90628941 -71970989 - AluSg1 SINE Alu 0 316 1 333 276 16 100 chrX 90630118 90630368 -71969562 - HERVL LTR ERVL -522 4474 4246 628 287 77 16 chrX 90630447 90630747 -71969183 - HERVL LTR ERVL -1077 4408 4077 268 309 40 20 chrX 90630735 90630887 -71969043 - HERVL LTR ERVL -1208 3788 3634 * 434 266 71 39 chrX 90631559 90631713 -71968217 + MIR SINE MIR 75 233 -29 * 676 264 50 38 chrX 90631711 90631950 -71967980 + MIR SINE MIR 21 262 0 369 299 45 30 chrX 90632267 90632401 -71967529 + MIR SINE MIR 18 153 -109 2063 101 3 36 chrX 90633924 90634230 -71965700 - AluSg SINE Alu -4 306 11 376 331 65 0 chrX 90634564 90634688 -71965242 + L2 LINE L2 3137 3268 -4 5701 100 4 0 chrX 90634875 90635677 -71964253 + L1PA13 LINE L1 5348 6152 -11 243 0 0 0 chrX 90636565 90636592 -71963338 + (CA)n Simple_repeat Simple_repeat 1 27 0 187 139 0 28 chrX 90636902 90636938 -71962992 - L2 LINE L2 -4 3268 3234 737 325 156 45 chrX 90637000 90637886 -71962044 - L2 LINE L2 -836 2478 1495 2495 122 22 8 chrX 90638979 90639349 -71960581 - THE1C LTR MaLR 0 375 1 1658 111 4 4 chrX 90639351 90639595 -71960335 - THE1C-int LTR MaLR -2 1578 1335 3901 104 14 3 chrX 90640057 90640631 -71959299 - L1PA13 LINE L1 -10 6153 5574 5269 64 22 1 chrX 90641180 90641872 -71958058 + L1PA8 LINE L1 5463 6168 -4 27 62 0 0 chrX 90642385 90642433 -71957497 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chrX 90642790 90642811 -71957119 + AT_rich Low_complexity Low_complexity 1 21 0 1677 162 0 4 chrX 90643175 90643446 -71956484 - AluSx SINE Alu -5 307 38 1676 117 87 15 chrX 90643691 90643983 -71955947 + AluSx SINE Alu 1 311 0 2383 121 25 0 chrX 90643986 90644341 -71955589 - THE1B LTR MaLR 0 364 1 24 67 0 0 chrX 90646274 90646319 -71953611 + AT_rich Low_complexity Low_complexity 1 45 0 198 103 0 0 chrX 90646518 90646547 -71953383 + (GA)n Simple_repeat Simple_repeat 1 29 0 189 0 0 0 chrX 90646752 90646773 -71953157 + (CA)n Simple_repeat Simple_repeat 2 22 0 394 107 0 0 chrX 90646781 90646837 -71953093 - L1MA7 LINE L1 -423 5868 5813 2490 172 39 62 chrX 90646886 90647479 -71952451 - L1MA7 LINE L1 -61 6230 5652 389 280 39 28 chrX 90647477 90647659 -71952271 - L1MC/D LINE L1 -2039 5769 5586 * 276 208 57 0 chrX 90648579 90648632 -71951298 + L2 LINE L2 3217 3272 0 2521 59 0 0 chrX 90649736 90650040 -71949890 - AluY SINE Alu -7 304 1 4711 158 57 8 chrX 90650620 90651473 -71948457 - MER4D LTR ERV1 -8 895 1 389 266 22 71 chrX 90651738 90651922 -71948008 + MLT1J LTR MaLR 4 178 -333 344 242 54 26 chrX 90652239 90652420 -71947510 + L1MC4 LINE L1 1880 6983 -1339 3248 198 27 4 chrX 90652472 90653215 -71946715 + L1 LINE L1 4000 4759 -1387 7568 77 17 5 chrX 90653215 90654201 -71945729 + HERVL LTR ERVL 4238 5235 -419 19202 190 30 13 chrX 90654225 90655702 -71944228 - L1 LINE L1 -2631 4934 3483 1855 144 49 0 chrX 90655702 90655986 -71943944 - AluSx SINE Alu -14 298 1 19202 190 30 13 chrX 90655986 90657313 -71942617 - L1 LINE L1 -4082 3483 2180 1889 151 3 7 chrX 90657313 90657604 -71942326 - AluSx SINE Alu -21 291 2 19202 190 30 13 chrX 90657604 90659637 -71940293 - L1 LINE L1 -5385 2180 12 255 333 40 0 chrX 90659945 90660044 -71939886 + MIR SINE MIR 2 104 -158 473 375 40 0 chrX 90660277 90660429 -71939501 - MER91A DNA MER1_type -27 169 12 487 329 93 29 chrX 90660830 90661076 -71938854 + MIR SINE MIR 1 262 0 248 280 32 32 chrX 90661550 90661643 -71938287 - MIR SINE MIR -135 127 35 2252 99 16 0 chrX 90661940 90662244 -71937686 + AluSc SINE Alu 1 309 0 24 0 0 0 chrX 90663089 90663113 -71936817 + AT_rich Low_complexity Low_complexity 1 24 0 677 301 57 5 chrX 90663290 90663483 -71936447 + MER63A DNA MER1_type 2 204 -6 464 313 83 14 chrX 90663629 90663846 -71936084 - MIR SINE MIR 0 262 31 330 388 82 11 chrX 90663887 90664155 -71935775 - L2 LINE L2 -99 3173 2887 1010 262 109 28 chrX 90664163 90664420 -71935510 - L2 LINE L2 0 3313 3012 668 268 61 0 chrX 90664420 90664584 -71935346 - MER96 DNA MER1_type -1 174 1 1010 262 109 28 chrX 90664584 90664719 -71935211 - L2 LINE L2 -301 3012 2889 2326 48 3 20 chrX 90665331 90665625 -71934305 - AluY SINE Alu -22 289 1 330 26 0 0 chrX 90665712 90665751 -71934179 + (TG)n Simple_repeat Simple_repeat 1 39 0 578 175 10 0 chrX 90665753 90665850 -71934080 - MLT1B LTR MaLR -291 99 2 245 233 23 35 chrX 90666277 90666363 -71933567 - MLT1K LTR MaLR 0 588 504 370 271 0 0 chrX 90666366 90666462 -71933468 + MIR SINE MIR 166 261 -1 192 191 21 43 chrX 90666469 90666516 -71933414 - L2 LINE L2 -4 3268 3223 * 411 250 40 16 chrX 90666513 90666637 -71933293 - MIR SINE MIR -83 179 53 542 296 65 0 chrX 90666825 90667028 -71932902 - MIR SINE MIR -11 251 38 2097 166 13 20 chrX 90667122 90667514 -71932416 + MLT1B LTR MaLR 2 390 0 2942 166 19 0 chrX 90667515 90668034 -71931896 + MLT1B-int LTR MaLR 2 530 -841 1587 233 34 29 chrX 90668080 90668556 -71931374 - L1MA9 LINE L1 -38 6274 5797 387 0 0 0 chrX 90668558 90668601 -71931329 + (TA)n Simple_repeat Simple_repeat 1 43 0 1577 233 35 3 chrX 90668601 90668944 -71930986 + MLT1B-int LTR MaLR 534 887 -484 1830 253 39 25 chrX 90669050 90669532 -71930398 + MLT1B-int LTR MaLR 882 1370 -1 1975 199 5 15 chrX 90669534 90669927 -71930003 + MLT1B LTR MaLR 2 390 0 28 0 0 0 chrX 90669987 90670015 -71929915 + AT_rich Low_complexity Low_complexity 1 28 0 216 97 0 0 chrX 90670024 90670055 -71929875 + (TA)n Simple_repeat Simple_repeat 2 32 0 1042 186 51 21 chrX 90670265 90670501 -71929429 - L1MA10 LINE L1 -11 6323 6081 2488 65 0 31 chrX 90670881 90671202 -71928728 + AluY SINE Alu 1 311 0 372 43 0 0 chrX 90671208 90671254 -71928676 + (TA)n Simple_repeat Simple_repeat 2 47 0 412 229 64 0 chrX 90671274 90671383 -71928547 - MIR SINE MIR -113 149 34 36 0 0 0 chrX 90673107 90673143 -71926787 + AT_rich Low_complexity Low_complexity 1 36 0 2305 172 13 3 chrX 90673873 90674263 -71925667 + MER57A LTR ERV1 8 401 -2 189 0 0 0 chrX 90674286 90674307 -71925623 + (A)n Simple_repeat Simple_repeat 1 21 0 411 302 119 13 chrX 90674480 90674715 -71925215 - L1MC/D LINE L1 -2053 5755 5496 22 80 0 0 chrX 90674757 90674807 -71925123 + AT_rich Low_complexity Low_complexity 1 50 0 2277 93 7 3 chrX 90675054 90675354 -71924576 + AluSp SINE Alu 1 301 -12 433 0 35 0 chrX 90675368 90675425 -71924505 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 410 274 97 24 chrX 90675512 90675760 -71924170 + L1M4 LINE L1 2 267 -6275 3947 235 35 24 chrX 90675878 90677156 -71922774 + L1M4 LINE L1 4513 5805 -846 824 332 40 50 chrX 90677156 90677779 -71922151 + L1PA15-16 LINE L1 5 621 -6228 1586 135 32 21 chrX 90677992 90678274 -71921656 - MST-int LTR MaLR -1048 603 319 1552 239 62 14 chrX 90678281 90678331 -71921599 - L1MCa LINE L1 -3069 3357 3311 286 22 0 44 chrX 90678331 90678376 -71921554 + (TA)n Simple_repeat Simple_repeat 1 43 0 1552 239 62 14 chrX 90678376 90678871 -71921059 - L1MCa LINE L1 -3115 3311 2744 305 173 12 25 chrX 90678932 90679013 -71920917 - L1MA7 LINE L1 -24 6267 6188 292 179 0 15 chrX 90679008 90679075 -71920855 - L1MCa LINE L1 -4008 2599 2534 * 1769 208 17 9 chrX 90679075 90679537 -71920393 + MLT2B2 LTR ERVL 1 513 -2 3256 190 104 115 chrX 90679538 90680141 -71919789 - L1MCa LINE L1 -3926 2500 1892 547 215 33 0 chrX 90680141 90680262 -71919668 - MER92B LTR ERV1 -29 607 483 3256 190 104 115 chrX 90680262 90681407 -71918523 - L1MCa LINE L1 -4534 1892 932 2436 85 0 0 chrX 90681407 90681713 -71918217 - AluSg SINE Alu -4 306 1 3256 190 104 115 chrX 90681713 90682562 -71917368 - L1MCa LINE L1 -5494 932 75 * 5251 89 15 28 chrX 90682558 90683352 -71916578 - L1PA10 LINE L1 -114 6054 5271 18844 49 0 6 chrX 90683754 90686466 -71913464 + L1P2 LINE L1 2974 5667 -487 929 114 0 0 chrX 90686482 90686613 -71913317 - L1PA6 LINE L1 -111 6043 5913 3582 87 0 0 chrX 90686613 90687094 -71912836 + L1PA6 LINE L1 5673 6154 0 378 85 0 0 chrX 90687281 90687340 -71912590 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 1214 254 3 3 chrX 90687880 90688179 -71911751 - AluJo SINE Alu -11 301 3 21 0 0 0 chrX 90688234 90688255 -71911675 + AT_rich Low_complexity Low_complexity 1 21 0 36 19 0 19 chrX 90688993 90689029 -71910901 + AT_rich Low_complexity Low_complexity 1 37 -16 1624 72 4 91 chrX 90689029 90689292 -71910638 - AluY SINE Alu -71 240 1 36 19 0 19 chrX 90689292 90689309 -71910621 + AT_rich Low_complexity Low_complexity 37 53 0 383 119 15 0 chrX 90689349 90689416 -71910514 + (TC)n Simple_repeat Simple_repeat 1 68 0 621 242 77 77 chrX 90689544 90689792 -71910138 - MLT1L LTR MaLR -340 275 28 33 0 0 0 chrX 90690256 90690289 -71909641 + AT_rich Low_complexity Low_complexity 1 33 0 221 194 0 0 chrX 90690491 90690527 -71909403 + L3b LINE CR1 1535 1570 -13 5989 191 11 10 chrX 90690566 90691866 -71908064 - L1 LINE L1 -768 5378 4077 308 250 0 12 chrX 90692395 90692479 -71907451 + MIR SINE MIR 168 250 -12 319 223 20 128 chrX 90692681 90692717 -71907213 + L1ME LINE L1 5528 5566 -555 2119 83 55 0 chrX 90692717 90693007 -71906923 - AluSp SINE Alu -7 306 1 319 223 20 128 chrX 90693007 90693118 -71906812 + L1ME LINE L1 5566 5659 -462 1475 340 87 31 chrX 90693640 90694668 -71905262 - L2 LINE L2 -661 2653 1569 550 309 81 9 chrX 90694843 90695066 -71904864 + MIR SINE MIR 3 241 -21 319 273 36 9 chrX 90695219 90695329 -71904601 + Charlie8 DNA MER1_type 32 144 -2273 2081 175 0 3 chrX 90695731 90696097 -71903833 - L1PA15 LINE L1 -1 6164 5800 841 138 6 11 chrX 90696097 90696252 -71903678 + L1PA15 LINE L1 5680 5831 -290 364 234 54 9 chrX 90696769 90696880 -71903050 + LTR33A LTR ERVL 406 521 -2 2056 161 114 5 chrX 90696926 90697312 -71902618 + MSTA LTR MaLR 1 428 0 26 0 0 0 chrX 90697700 90697726 -71902204 + AT_rich Low_complexity Low_complexity 1 26 0 3452 176 32 24 chrX 90698467 90699178 -71900752 - L1MB1 LINE L1 -2 5990 5274 3482 206 20 4 chrX 90699178 90699926 -71900004 - L1MB1 LINE L1 -1055 4915 4156 1459 303 77 42 chrX 90699927 90700623 -71899307 - L1MB1 LINE L1 -4986 905 402 2248 100 0 0 chrX 90700623 90700922 -71899008 - AluSq SINE Alu -14 299 1 1459 303 77 42 chrX 90700922 90701339 -71898591 - L1MB1 LINE L1 -5489 402 1 180 0 0 0 chrX 90701703 90701723 -71898207 + (TA)n Simple_repeat Simple_repeat 2 21 0 25 102 0 0 chrX 90701911 90701999 -71897931 + AT_rich Low_complexity Low_complexity 1 88 0 2462 176 7 2 chrX 90702788 90703214 -71896716 + MSTA LTR MaLR 1 428 0 2313 135 10 0 chrX 90703214 90703637 -71896293 + MSTA-int LTR MaLR 1 423 -5 234 344 36 0 chrX 90703640 90703815 -71896115 - L1ME LINE L1 -460 5661 5481 324 0 0 0 chrX 90703854 90703890 -71896040 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 228 333 48 0 chrX 90706003 90706108 -71893822 + MIR SINE MIR 138 247 -15 305 234 0 0 chrX 90706828 90706892 -71893038 + L1MC4 LINE L1 6640 6703 -1339 25 0 0 0 chrX 90707693 90707718 -71892212 + AT_rich Low_complexity Low_complexity 1 25 0 1261 144 31 16 chrX 90707718 90707975 -71891955 - L1MA8 LINE L1 -6 6285 6025 567 215 23 0 chrX 90707975 90708105 -71891825 - MSTB1-int LTR MaLR -1518 133 1 1298 147 22 22 chrX 90708105 90708337 -71891593 - MSTB1 LTR MaLR 0 432 201 561 367 62 29 chrX 90708960 90709394 -71890536 - L2 LINE L2 -195 3077 2638 1232 152 14 9 chrX 90709756 90709973 -71889957 + L1PB4 LINE L1 5938 6155 -1 244 303 91 0 chrX 90710087 90710153 -71889777 - L2 LINE L2 -364 2950 2879 1501 299 73 27 chrX 90710199 90710832 -71889098 - L2 LINE L2 -578 2736 2075 2127 294 124 22 chrX 90710832 90711336 -71888594 - L2 LINE L2 -1669 1645 1194 1976 196 53 66 chrX 90711336 90711954 -71887976 + LTR38B LTR ERV1 1 610 0 2127 294 124 22 chrX 90711954 90712350 -71887580 - L2 LINE L2 -2120 1194 653 267 169 13 143 chrX 90712359 90712436 -71887494 + MER8 DNA MER2_type 1 67 -172 250 296 0 0 chrX 90712450 90712504 -71887426 + MER8 DNA MER2_type 186 239 0 574 286 109 5 chrX 90712505 90712697 -71887233 - L2 LINE L2 -2670 644 433 264 296 14 0 chrX 90712692 90712763 -71887167 + MIR SINE MIR 188 259 -3 * 29 59 0 15 chrX 90712765 90712792 -71887138 + AT_rich Low_complexity Low_complexity 1 27 -40 571 165 0 0 chrX 90712792 90712889 -71887041 + HY3 scRNA scRNA 3 99 -2 29 59 0 15 chrX 90712889 90712929 -71887001 + AT_rich Low_complexity Low_complexity 27 67 0 23 0 0 0 chrX 90713772 90713795 -71886135 + AT_rich Low_complexity Low_complexity 1 23 0 948 135 35 0 chrX 90713802 90713972 -71885958 - L1MA8 LINE L1 -4 6287 6112 457 304 76 11 chrX 90714521 90714705 -71885225 + MIR3 SINE MIR 4 199 -9 1785 202 29 0 chrX 90715049 90715400 -71884530 + MLT1A1 LTR MaLR 1 361 -4 6564 140 38 25 chrX 90715728 90716943 -71882987 - Tigger3b DNA MER2_type 0 1231 1 335 281 119 42 chrX 90717554 90717814 -71882116 - MLT1L LTR MaLR -4 611 332 617 295 136 50 chrX 90718125 90718786 -71881144 - L1 LINE L1 -1325 4821 4104 356 245 61 20 chrX 90718958 90719056 -71880874 - MER5A DNA MER1_type -1 188 87 566 319 111 32 chrX 90719191 90719928 -71880002 - L1 LINE L1 -2410 3736 2915 6369 83 16 1 chrX 90719928 90721616 -71878314 - L1PA10 LINE L1 -2 6166 4441 566 319 111 32 chrX 90721616 90721738 -71878192 - L1 LINE L1 -3231 2915 2804 2125 178 3 0 chrX 90721830 90722195 -71877735 + MER47A DNA MER2_type 1 366 0 828 261 59 20 chrX 90722301 90722604 -71877326 - HAL1 LINE L1 -125 2382 2068 1684 274 114 28 chrX 90722605 90723010 -71876920 - HAL1 LINE L1 -519 1988 1619 1368 197 13 52 chrX 90723010 90723319 -71876611 - AluJo SINE Alu -15 297 1 1684 274 114 28 chrX 90723319 90723767 -71876163 - HAL1 LINE L1 -888 1619 1062 466 287 83 6 chrX 90723814 90723971 -71875959 - HAL1 LINE L1 -1555 952 784 1224 198 4 21 chrX 90724019 90724257 -71875673 + Tigger4(Zombi) DNA MER2_type 2 235 -2496 * 3495 125 22 12 chrX 90724252 90724830 -71875100 + Tigger4(Zombi) DNA MER2_type 2148 2731 0 1058 315 163 16 chrX 90724830 90725443 -71874487 - HAL1 LINE L1 -1804 703 1 1454 137 20 31 chrX 90725668 90725916 -71874014 + L1MA9 LINE L1 6019 6265 -47 1938 158 3 0 chrX 90725916 90726213 -71873717 - AluJb SINE Alu -14 298 1 1454 137 20 31 chrX 90726213 90726256 -71873674 + L1MA9 LINE L1 6265 6307 -5 24 0 0 0 chrX 90726259 90726283 -71873647 + AT_rich Low_complexity Low_complexity 1 24 0 344 202 106 11 chrX 90726338 90726432 -71873498 - MER103 DNA DNA -63 103 1 335 278 184 33 chrX 90726903 90727067 -71872863 + MIR SINE MIR 3 207 -55 2695 177 23 16 chrX 90727067 90727625 -71872305 + MER34B LTR ERV1 1 562 -3 335 278 184 33 chrX 90727625 90727672 -71872258 + MIR SINE MIR 207 246 -16 492 270 57 26 chrX 90728693 90728923 -71871007 - L1MC4 LINE L1 -690 7352 7116 21 0 0 0 chrX 90729055 90729076 -71870854 + AT_rich Low_complexity Low_complexity 1 21 0 2414 82 0 0 chrX 90729533 90729837 -71870093 - AluY SINE Alu -6 305 2 394 223 64 0 chrX 90730281 90730375 -71869555 - LTR67 LTR ERVL 0 557 458 2625 113 0 0 chrX 90730385 90730747 -71869183 + THE1B LTR MaLR 1 362 -2 10614 103 23 27 chrX 90730749 90732336 -71867594 + THE1B-int LTR MaLR 1 1580 0 2357 146 3 0 chrX 90732336 90732699 -71867231 + THE1B LTR MaLR 1 364 0 492 366 78 33 chrX 90732699 90733122 -71866808 - LTR67 LTR ERVL -105 452 11 207 157 39 39 chrX 90733151 90733202 -71866728 + (CATA)n Simple_repeat Simple_repeat 4 54 0 644 280 50 0 chrX 90733232 90733414 -71866516 + MIR SINE MIR 51 241 -21 1398 81 0 0 chrX 90734215 90734388 -71865542 - AluSp SINE Alu -9 304 132 369 0 0 0 chrX 90734614 90734655 -71865275 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 79 0 0 chrX 90734655 90734693 -71865237 + MLT2B2 LTR ERVL 478 515 0 819 258 71 4 chrX 90734693 90734933 -71864997 + L1M4 LINE L1 4551 4806 -1340 1713 218 95 24 chrX 90734933 90735387 -71864543 - MLT2B1 LTR ERVL -34 486 1 948 192 29 37 chrX 90735387 90735632 -71864298 - HERVL-B1 LTR ERVL 0 5654 5412 943 229 5 5 chrX 90735633 90735838 -71864092 + MER2 DNA MER2_type 1 205 -140 366 206 41 0 chrX 90735874 90735947 -71863983 + MER2 DNA MER2_type 269 344 -1 941 220 5 14 chrX 90735958 90736181 -71863749 - L1M4 LINE L1 -1876 4270 4050 403 218 45 30 chrX 90736230 90736409 -71863521 + MER20 DNA MER1_type 1 216 -3 452 315 39 0 chrX 90736979 90737106 -71862824 + L2 LINE L2 3137 3268 -4 1118 205 223 12 chrX 90737653 90737980 -71861950 - MSTD LTR MaLR 0 396 1 349 187 67 80 chrX 90739126 90739276 -71860654 - TAR1 Satellite telomeric -1930 181 34 * 2432 196 14 34 chrX 90739149 90739709 -71860221 - LTR60 LTR ERV1 -37 549 1 294 289 30 89 chrX 90740215 90740350 -71859580 + L2 LINE L2 2933 3059 -213 986 278 66 42 chrX 90740386 90740811 -71859119 - L2 LINE L2 0 3313 2879 352 284 7 142 chrX 90740973 90741248 -71858682 - MIR SINE MIR -5 257 20 2600 98 17 6 chrX 90741646 90742004 -71857926 + THE1B LTR MaLR 2 363 -1 204 40 0 0 chrX 90742004 90742029 -71857901 + (GA)n Simple_repeat Simple_repeat 2 26 0 366 299 65 0 chrX 90742298 90742452 -71857478 - L1ME4a LINE L1 -213 5908 5745 346 300 0 0 chrX 90742809 90742899 -71857031 + L1MEc LINE L1 1648 1737 -4659 28 29 0 0 chrX 90742913 90742948 -71856982 + AT_rich Low_complexity Low_complexity 1 35 0 955 124 174 18 chrX 90743016 90743234 -71856696 + LTR1 LTR ERV1 1 252 -533 6279 219 48 17 chrX 90743311 90744570 -71855360 - L1 LINE L1 -980 5166 3843 2275 97 0 0 chrX 90744570 90744858 -71855072 - AluSx SINE Alu -24 288 1 6279 219 48 17 chrX 90744858 90745211 -71854719 - L1 LINE L1 -2303 3843 3503 1009 261 29 0 chrX 90745214 90745520 -71854410 + L1MEc LINE L1 2618 2932 -3283 820 103 27 109 chrX 90746391 90746434 -71853496 + L1MA8 LINE L1 6101 6146 -145 4196 143 29 12 chrX 90746434 90747168 -71852762 - L1PA16 LINE L1 -1 6165 5420 820 103 27 109 chrX 90747168 90747308 -71852622 + L1MA8 LINE L1 6146 6269 -22 21 0 0 0 chrX 90747320 90747341 -71852589 + AT_rich Low_complexity Low_complexity 1 21 0 597 39 39 0 chrX 90747876 90747953 -71851977 - MADE1 DNA Mariner 0 80 1 343 286 152 23 chrX 90748075 90748246 -71851684 - MIR SINE MIR -69 193 1 2392 83 3 0 chrX 90748264 90748565 -71851365 - AluSp SINE Alu -11 302 1 219 270 0 27 chrX 90748666 90748740 -71851190 + A-rich Low_complexity Low_complexity 3 74 0 676 235 33 52 chrX 90749244 90749457 -71850473 - MER63A DNA MER1_type 0 210 2 364 195 11 0 chrX 90750127 90750214 -71849716 + L1PB4 LINE L1 6065 6152 -4 24 0 0 0 chrX 90750422 90750446 -71849484 + AT_rich Low_complexity Low_complexity 1 24 0 2092 147 0 27 chrX 90752496 90752721 -71847209 + MER46B DNA MER2_type 2 90 -2641 2503 60 13 0 chrX 90752721 90753023 -71846907 + AluSp SINE Alu 1 306 -7 2092 147 0 27 chrX 90753023 90753165 -71846765 + MER46B DNA MER2_type 90 234 -2 280 360 18 0 chrX 90753665 90753779 -71846151 - L2 LINE L2 -14 3299 3184 366 256 12 0 chrX 90753808 90753894 -71846036 + MLT1J1 LTR MaLR 347 433 -13 683 307 16 67 chrX 90753899 90754215 -71845715 + L2 LINE L2 1042 1341 -1973 1501 165 13 0 chrX 90754234 90754471 -71845459 - LTR32 LTR ERVL 0 471 232 309 93 0 0 chrX 90754510 90754553 -71845377 - LTR32 LTR ERVL -414 57 15 2483 269 62 66 chrX 90754554 90755655 -71844275 + L2 LINE L2 1386 2481 -833 650 266 269 25 chrX 90755674 90756031 -71843899 + L2 LINE L2 2851 3294 -19 200 366 46 23 chrX 90756044 90756175 -71843755 - L2 LINE L2 -410 2904 2771 2192 91 31 6 chrX 90756504 90756894 -71843036 + LTR7 LTR ERV1 1 450 0 232 338 0 13 chrX 90757451 90757528 -71842402 - L2 LINE L2 -6 3307 3232 671 310 12 16 chrX 90757540 90757798 -71842132 + MIR SINE MIR 4 260 -2 200 261 0 0 chrX 90757956 90758002 -71841928 + L2 LINE L2 2163 2208 -1106 220 185 37 0 chrX 90758383 90758437 -71841493 + (TTATA)n Simple_repeat Simple_repeat 4 59 0 410 128 52 23 chrX 90758438 90758610 -71841320 + (TA)n Simple_repeat Simple_repeat 1 177 0 291 325 38 50 chrX 90759233 90759393 -71840537 + MER5A DNA MER1_type 10 167 -22 222 176 0 0 chrX 90759582 90759633 -71840297 + (CA)n Simple_repeat Simple_repeat 2 52 0 1961 161 6 0 chrX 90759977 90760328 -71839602 + L1PB3 LINE L1 5813 6165 0 2176 153 53 13 chrX 90760375 90760754 -71839176 + MSTD LTR MaLR 1 394 -2 35 41 0 0 chrX 90761476 90761525 -71838405 + AT_rich Low_complexity Low_complexity 1 49 0 180 111 0 0 chrX 90761978 90762005 -71837925 + (GGAGAA)n Simple_repeat Simple_repeat 2 28 0 267 264 64 18 chrX 90762518 90762628 -71837302 + MER103 DNA DNA 3 117 -49 23 0 0 0 chrX 90762756 90762779 -71837151 + AT_rich Low_complexity Low_complexity 1 23 0 1907 194 25 39 chrX 90762961 90763398 -71836532 - MSTB1 LTR MaLR 0 432 2 22 0 0 0 chrX 90764037 90764059 -71835871 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 90764103 90764133 -71835797 + AT_rich Low_complexity Low_complexity 1 30 0 4749 192 24 7 chrX 90764250 90764755 -71835175 - L1PA13 LINE L1 0 6163 5668 2295 100 3 0 chrX 90764755 90765054 -71834876 - AluSx SINE Alu -12 300 1 4749 192 24 7 chrX 90765054 90769231 -71830699 - L1PA13 LINE L1 -495 5668 1305 3554 204 40 0 chrX 90769366 90769992 -71829938 + L1PA13 LINE L1 2 652 -6135 664 208 58 49 chrX 90770005 90770288 -71829642 + L1MEc LINE L1 648 895 -5175 9108 172 119 63 chrX 90770300 90771257 -71828673 - L1PBa LINE L1 -3972 2891 1989 2091 114 3 20 chrX 90771257 90771556 -71828374 - AluSx SINE Alu -18 294 1 9108 172 119 63 chrX 90771556 90773211 -71826719 - L1PBa LINE L1 -4874 1989 29 4833 203 8 1 chrX 90773204 90774229 -71825701 + L1MEc LINE L1 2085 3116 -2964 * 4378 243 37 9 chrX 90774231 90775798 -71824132 - L1M1 LINE L1 -5261 2304 16 601 173 13 33 chrX 90775845 90775995 -71823935 + L1MB8 LINE L1 6032 6178 0 391 298 70 45 chrX 90776001 90776265 -71823665 + L1ME LINE L1 904 1209 -4986 198 0 0 0 chrX 90776287 90776309 -71823621 + (CA)n Simple_repeat Simple_repeat 1 22 0 1177 177 25 53 chrX 90776314 90776597 -71823333 - LTR8A LTR ERV1 -44 683 409 1689 170 43 0 chrX 90776648 90776977 -71822953 + L1MA8 LINE L1 5946 6288 -3 268 230 207 0 chrX 90777248 90777335 -71822595 - MER70B LTR ERVL -18 560 456 893 213 60 58 chrX 90778074 90778477 -71821453 - MLT1E3 LTR MaLR 0 624 137 2539 57 0 13 chrX 90778477 90778792 -71821138 - AluY SINE Alu 0 311 1 893 213 60 58 chrX 90778792 90778930 -71821000 - MLT1E3 LTR MaLR -487 137 1 340 276 226 28 chrX 90778982 90779199 -71820731 + MIR SINE MIR 2 261 -1 280 307 162 9 chrX 90779229 90779457 -71820473 - HAL1 LINE L1 0 2507 2245 227 277 109 17 chrX 90779583 90779702 -71820228 - HAL1b LINE L1 -435 913 784 2142 120 48 28 chrX 90779814 90780171 -71819759 + THE1B LTR MaLR 1 364 0 10405 115 21 15 chrX 90780172 90781741 -71818189 + THE1B-int LTR MaLR 2 1579 -1 1924 138 63 29 chrX 90781744 90782093 -71817837 + THE1B LTR MaLR 4 364 0 932 250 0 0 chrX 90782965 90783173 -71816757 + L1PA16 LINE L1 5954 6161 -5 227 164 0 36 chrX 90783216 90783271 -71816659 + A-rich Low_complexity Low_complexity 6 58 0 437 277 87 41 chrX 90786778 90786973 -71812957 + MIR SINE MIR 4 207 -55 424 264 72 8 chrX 90787153 90787278 -71812652 + MIR SINE MIR 29 161 -101 614 338 67 47 chrX 90787450 90788003 -71811927 + L2 LINE L2 2726 3287 -26 597 319 90 31 chrX 90788019 90788474 -71811456 + LTR33 LTR ERVL 37 518 -3 1667 202 174 9 chrX 90788488 90788918 -71811012 - MLT1D LTR MaLR -4 501 1 774 297 5 1 chrX 90788999 90789220 -71810710 - MIR SINE MIR -5 257 38 284 343 10 0 chrX 90789218 90789317 -71810613 - L3 LINE CR1 -231 1346 1247 * 4387 290 101 54 chrX 90789327 90791899 -71808031 + L1PA12 LINE L1 2 2695 -4886 18325 183 29 32 chrX 90791905 90797924 -71802006 + L1PB1 LINE L1 5 6030 -837 210 71 0 0 chrX 90797924 90797952 -71801978 + (TAA)n Simple_repeat Simple_repeat 1 28 0 18325 183 29 32 chrX 90797952 90798780 -71801150 + L1PB1 LINE L1 6030 6859 -8 13443 234 45 25 chrX 90798763 90802846 -71797084 + L1PA12 LINE L1 2664 6830 -754 * 2109 138 0 0 chrX 90802850 90803162 -71796768 + AluSx SINE Alu 1 312 0 1615 224 39 23 chrX 90803177 90803354 -71796576 + MSTB LTR MaLR 5 178 -248 2267 104 0 0 chrX 90803354 90803663 -71796267 + AluSc SINE Alu 1 309 0 1615 224 39 23 chrX 90803663 90803874 -71796056 + MSTB LTR MaLR 178 399 -27 707 255 19 39 chrX 90803889 90804097 -71795833 + MSTD LTR MaLR 193 396 0 719 282 28 37 chrX 90805454 90805843 -71794087 + MLT2D LTR ERVL 21 407 -57 2332 159 33 21 chrX 90805856 90806277 -71793653 + MSTC LTR MaLR 3 428 0 3514 270 113 74 chrX 90806279 90806590 -71793340 + THE1B-int LTR MaLR 2 299 -1436 2697 107 0 3 chrX 90806590 90806955 -71792975 + THE1B LTR MaLR 1 364 0 3514 270 113 74 chrX 90806955 90808112 -71791818 + THE1B-int LTR MaLR 299 1527 -208 358 252 35 17 chrX 90808116 90808231 -71791699 + MSTC-int LTR MaLR 1619 1735 0 2273 171 16 35 chrX 90808231 90808665 -71791265 + MSTC LTR MaLR 1 426 -2 346 141 0 0 chrX 90808665 90808721 -71791209 + MLT2D LTR ERVL 366 414 0 407 278 9 9 chrX 90809470 90809585 -71790345 + MIR3 SINE MIR 93 207 -1 234 150 0 0 chrX 90810142 90810182 -71789748 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 82 0 0 chrX 90810216 90810265 -71789665 + AT_rich Low_complexity Low_complexity 1 49 0 186 71 0 0 chrX 90811154 90811182 -71788748 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1011 172 97 0 chrX 90811525 90811711 -71788219 + MER20 DNA MER1_type 16 219 0 324 308 0 0 chrX 90811784 90811875 -71788055 - MIR SINE MIR -10 252 162 346 260 13 40 chrX 90812758 90812908 -71787022 + GA-rich Low_complexity Low_complexity 4 149 0 568 260 58 0 chrX 90812922 90813095 -71786835 + MIR SINE MIR 80 262 0 395 318 0 0 chrX 90813303 90813432 -71786498 - MER94 DNA DNA -4 130 2 270 116 0 0 chrX 90813773 90813816 -71786114 + (CA)n Simple_repeat Simple_repeat 2 44 0 2090 153 49 0 chrX 90813923 90814290 -71785640 - L1PB3 LINE L1 0 6154 5770 2410 99 11 0 chrX 90814299 90814652 -71785278 - L1PB1 LINE L1 -1 6866 6510 339 25 0 0 chrX 90814652 90814692 -71785238 + (TG)n Simple_repeat Simple_repeat 1 40 0 207 197 14 28 chrX 90814708 90814779 -71785151 + (TA)n Simple_repeat Simple_repeat 1 70 0 261 150 0 17 chrX 90814779 90814839 -71785091 + LTR66 LTR ERVL 376 434 -176 228 140 0 40 chrX 90814799 90814849 -71785081 - LTR66 LTR ERVL -178 432 385 * 240 143 0 0 chrX 90814857 90814899 -71785031 + (TG)n Simple_repeat Simple_repeat 2 43 0 12625 163 79 13 chrX 90814912 90820413 -71779517 - L1PB1 LINE L1 -360 6507 634 953 180 16 0 chrX 90820416 90820605 -71779325 - L1PB1 LINE L1 -6668 195 4 2683 146 39 4 chrX 90820611 90820892 -71779038 - L1PB3 LINE L1 -373 5781 5476 399 41 0 0 chrX 90820892 90820941 -71778989 + (TA)n Simple_repeat Simple_repeat 2 50 0 2683 146 39 4 chrX 90820941 90821119 -71778811 - L1PB3 LINE L1 -678 5476 5306 27 29 0 0 chrX 90822309 90822343 -71777587 + AT_rich Low_complexity Low_complexity 1 34 0 771 301 23 19 chrX 90822524 90822780 -71777150 - MIR SINE MIR 0 262 6 599 258 157 22 chrX 90824432 90824661 -71775269 + MIR SINE MIR 2 261 -1 780 261 15 15 chrX 90824757 90824952 -71774978 - MIR SINE MIR -55 207 13 1132 171 104 106 chrX 90825258 90825709 -71774221 + LTR7 LTR ERV1 1 450 0 200 315 31 47 chrX 90825876 90826003 -71773927 + L2 LINE L2 2371 2495 -819 383 215 97 11 chrX 90827272 90827365 -71772565 - MER2 DNA MER2_type 0 345 245 21 57 0 0 chrX 90828815 90828850 -71771080 + AT_rich Low_complexity Low_complexity 1 35 0 220 385 49 16 chrX 90830521 90830643 -71769287 + L2 LINE L2 2905 3030 -242 1398 233 11 0 chrX 90831047 90831330 -71768600 + AluJb SINE Alu 1 286 -16 26 64 0 0 chrX 90831359 90831406 -71768524 + AT_rich Low_complexity Low_complexity 1 47 0 13450 188 40 16 chrX 90831507 90838073 -71761857 - L1PB1 LINE L1 -1 6866 1 434 306 7 21 chrX 90838125 90838269 -71761661 + L2 LINE L2 3168 3309 -4 189 107 0 0 chrX 90838542 90838570 -71761360 + (A)n Simple_repeat Simple_repeat 1 28 0 2027 167 77 15 chrX 90838619 90839020 -71760910 - MSTB LTR MaLR 0 426 1 8564 197 28 2 chrX 90839022 90840604 -71759326 - MSTB-int LTR MaLR -2 1649 27 4784 98 15 10 chrX 90840605 90841332 -71758598 + L1MA1 LINE L1 5572 6302 0 28 0 0 0 chrX 90841993 90842021 -71757909 + AT_rich Low_complexity Low_complexity 1 28 0 7469 30 0 1 chrX 90842063 90843727 -71756203 + L1PA4 LINE L1 4530 6155 0 1356 306 44 16 chrX 90844029 90844480 -71755450 - LTR16C LTR ERVL 0 491 28 2736 13 0 13 chrX 90844828 90845143 -71754787 - AluYb8 SINE Alu -7 311 1 468 346 122 55 chrX 90845315 90846175 -71753755 - L2 LINE L2 0 3272 2352 611 319 4 33 chrX 90846183 90846456 -71753474 - L1MEd LINE L1 -1992 4652 4388 925 305 4 86 chrX 90846676 90847128 -71752802 + L2 LINE L2 2868 3282 -31 2289 88 0 0 chrX 90847514 90847808 -71752122 - AluSc SINE Alu -15 294 1 5488 168 35 4 chrX 90848109 90849495 -71750435 - L1MA5 LINE L1 -6 6294 4867 1672 180 33 35 chrX 90849495 90849530 -71750400 + LTR49 LTR ERV1 1 35 -560 1936 105 58 0 chrX 90849530 90849806 -71750124 - AluSc SINE Alu -17 292 1 1672 180 33 35 chrX 90849806 90850277 -71749653 + LTR49 LTR ERV1 35 592 -3 1576 209 11 14 chrX 90850285 90850654 -71749276 - L1MA5 LINE L1 -1280 4866 4499 228 275 37 28 chrX 90850650 90850740 -71749190 - L1M4 LINE L1 -4206 2440 2347 * 1651 220 5 14 chrX 90850740 90851108 -71748822 - MLT1A1 LTR MaLR 0 365 1 228 275 37 28 chrX 90851108 90851126 -71748804 - L1M4 LINE L1 -4299 2347 2331 * 1975 203 7 33 chrX 90851113 90851537 -71748393 - MLT1A1-int LTR MaLR -5 1730 1318 440 376 35 12 chrX 90851677 90851850 -71748080 - MLT1A1-int LTR MaLR -463 1272 1096 3400 234 6 26 chrX 90851850 90852644 -71747286 - MLT1A1-int LTR MaLR -956 779 2 1809 192 3 30 chrX 90852649 90853018 -71746912 - MLT1A1 LTR MaLR -4 361 3 800 297 31 6 chrX 90853119 90853439 -71746491 - L1M4 LINE L1 -4480 2166 1839 1217 210 77 32 chrX 90853442 90853885 -71746045 - L1M4 LINE L1 -5045 1497 1035 3249 241 34 62 chrX 90855033 90855486 -71744444 - L1M4 LINE L1 -5512 1030 566 1962 158 0 13 chrX 90855486 90855802 -71744128 + AluSx SINE Alu 1 312 0 3249 241 34 62 chrX 90855802 90856394 -71743536 - L1M4 LINE L1 -5976 566 14 426 268 135 22 chrX 90856419 90857043 -71742887 - L1MEd LINE L1 -2698 3946 3253 817 176 57 0 chrX 90857056 90857215 -71742715 - L1PA16 LINE L1 -9 6157 5990 2136 211 55 98 chrX 90857231 90857956 -71741974 + LTR8A LTR ERV1 34 727 0 266 218 0 0 chrX 90857958 90858013 -71741917 - L1PA16 LINE L1 -176 5990 5936 334 276 90 19 chrX 90858013 90858169 -71741761 - L1MEd LINE L1 -3395 3249 3083 738 289 48 14 chrX 90858204 90858412 -71741518 - MER58A DNA MER1_type -3 221 7 372 291 31 24 chrX 90858441 90858733 -71741197 - L1MEd LINE L1 -3604 3040 2747 1814 198 18 3 chrX 90858835 90859169 -71740761 - MER7A DNA MER2_type -9 337 1 39 22 0 0 chrX 90859329 90859375 -71740555 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chrX 90859434 90859470 -71740460 + AT_rich Low_complexity Low_complexity 1 36 0 311 313 122 14 chrX 90859572 90859850 -71740080 - L1MEd LINE L1 -4648 2177 1870 23 0 0 0 chrX 90859914 90859937 -71739993 + AT_rich Low_complexity Low_complexity 1 23 0 819 233 38 74 chrX 90859940 90860275 -71739655 - L1MC5 LINE L1 -67 7894 7577 2603 148 24 5 chrX 90860275 90860693 -71739237 - MSTB LTR MaLR 0 426 1 819 233 38 74 chrX 90860693 90860803 -71739127 - L1MC5 LINE L1 -384 7577 7465 389 252 108 41 chrX 90860808 90861027 -71738903 - L1MEd LINE L1 -4867 1767 1477 429 332 10 40 chrX 90861029 90861228 -71738702 - L1MEd LINE L1 -5488 1146 954 354 23 0 0 chrX 90861621 90861664 -71738266 + (TG)n Simple_repeat Simple_repeat 2 44 0 310 324 47 27 chrX 90861914 90862062 -71737868 + MIR SINE MIR 66 216 -46 273 342 54 40 chrX 90863336 90863485 -71736445 - L2 LINE L2 0 3272 3122 1245 169 16 4 chrX 90863764 90864012 -71735918 + L1MA4 LINE L1 6041 6291 -9 609 279 23 6 chrX 90864134 90864306 -71735624 - MIR3 SINE MIR -14 194 20 32 0 0 0 chrX 90864668 90864700 -71735230 + AT_rich Low_complexity Low_complexity 1 32 0 368 338 119 37 chrX 90864813 90865082 -71734848 - L2 LINE L2 -71 3242 2952 713 144 48 218 chrX 90865192 90865504 -71734426 + Tigger3(Golem) DNA MER2_type 20 278 -2751 612 200 37 7 chrX 90865548 90865683 -71734247 - Tigger3(Golem) DNA MER2_type -2773 256 118 254 290 0 0 chrX 90865702 90865764 -71734166 + MIR SINE MIR 56 117 -91 510 200 0 0 chrX 90865765 90865850 -71734080 - Tigger3(Golem) DNA MER2_type -2925 104 20 2577 135 9 2 chrX 90866066 90866496 -71733434 + Tigger3b DNA MER2_type 225 657 -574 943 78 78 0 chrX 90866500 90866629 -71733301 - MER85 DNA T2_type 0 139 1 * 2967 159 55 7 chrX 90866629 90867173 -71732757 + Tigger3b DNA MER2_type 659 1228 -3 1633 253 93 39 chrX 90867783 90868377 -71731553 - MLT1E2 LTR MaLR 0 626 1 2179 138 8 8 chrX 90869273 90869628 -71730302 + THE1A LTR MaLR 1 355 0 11079 110 4 2 chrX 90869628 90871205 -71728725 + THE1A-int LTR MaLR 1 1580 0 2285 121 8 11 chrX 90871205 90871561 -71728369 + THE1A LTR MaLR 1 355 0 512 281 144 0 chrX 90872102 90872248 -71727682 + L2 LINE L2 2583 2749 -565 312 287 40 20 chrX 90872291 90872392 -71727538 - MER5A DNA MER1_type 0 189 87 2206 89 24 0 chrX 90872875 90873168 -71726762 - AluSp SINE Alu 0 313 14 428 100 129 0 chrX 90875113 90875183 -71724747 + MADE1 DNA Mariner 2 80 0 319 316 68 0 chrX 90875518 90875635 -71724295 - L2 LINE L2 -1 3312 3188 406 371 78 12 chrX 90875745 90876001 -71723929 + L2 LINE L2 2640 2912 -402 180 111 0 0 chrX 90876192 90876219 -71723711 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 298 331 21 70 chrX 90876219 90876361 -71723569 + L2 LINE L2 3137 3271 -1 3331 147 86 16 chrX 90876416 90877022 -71722908 + MER51A LTR ERV1 1 640 0 2569 30 0 0 chrX 90878221 90878520 -71721410 - AluY SINE Alu -12 299 1 240 318 39 39 chrX 90878667 90878796 -71721134 - MIR SINE MIR -46 216 88 184 262 97 97 chrX 90880239 90880342 -71719588 + MIR3 SINE MIR 2 104 -104 301 360 26 13 chrX 90880378 90880531 -71719399 - MIR SINE MIR -74 188 34 2047 167 44 113 chrX 90880647 90880681 -71719249 + MLT2B3 LTR ERVL 1 36 -518 2058 131 33 41 chrX 90880681 90881048 -71718882 - THE1B LTR MaLR 0 364 1 2047 167 44 113 chrX 90881048 90881606 -71718324 + MLT2B3 LTR ERVL 36 552 -2 1184 258 52 58 chrX 90882140 90882605 -71717325 - MLT1C LTR MaLR 0 467 6 1443 356 46 23 chrX 90882610 90883113 -71716817 + ERVL LTR ERVL 4167 4702 -1062 2108 181 31 17 chrX 90883113 90883533 -71716397 - MSTB LTR MaLR 0 426 1 1443 356 46 23 chrX 90883533 90883936 -71715994 + ERVL LTR ERVL 4702 5094 -670 404 255 250 21 chrX 90884392 90884584 -71715346 + LTR16C LTR ERVL 97 332 -159 3325 279 40 21 chrX 90884720 90886175 -71713755 + L1MD1 LINE L1 2230 3712 -2434 859 253 119 67 chrX 90886178 90886891 -71713039 + L1MD1 LINE L1 4366 5115 -1031 660 181 0 4 chrX 90886919 90887065 -71712865 + L1MD1 LINE L1 5342 5481 -770 3128 200 34 22 chrX 90887066 90887796 -71712134 + L1MC3 LINE L1 7039 7777 -8 2986 206 35 30 chrX 90887798 90888568 -71711362 + L1MD1 LINE L1 5467 6240 -2 308 333 11 0 chrX 90888749 90888839 -71711091 + MER5A DNA MER1_type 78 168 -21 227 319 44 35 chrX 90888756 90888869 -71711061 - MER5A DNA MER1_type -74 115 2 * 1004 107 0 0 chrX 90888897 90889028 -71710902 + AluSg SINE Alu 1 131 -179 305 101 43 29 chrX 90889033 90889102 -71710828 - L1MC3 LINE L1 -17 7768 7699 936 120 0 0 chrX 90889105 90889260 -71710670 + AluSg/x SINE Alu 157 311 0 458 256 38 0 chrX 90889260 90889393 -71710537 - MER112 DNA MER1_type -34 226 89 252 86 0 0 chrX 90889395 90889430 -71710500 + (TG)n Simple_repeat Simple_repeat 1 35 0 3398 129 2 4 chrX 90890296 90890809 -71709121 - MER75 DNA T2_type -2 512 1 4934 163 33 16 chrX 90890881 90891848 -71708082 + L1MC1 LINE L1 5350 6332 -1 25 51 0 0 chrX 90891915 90891954 -71707976 + AT_rich Low_complexity Low_complexity 1 39 0 2609 26 3 0 chrX 90892256 90892584 -71707346 + L1PA4 LINE L1 5831 6159 0 2440 62 0 34 chrX 90892952 90893274 -71706656 + AluY SINE Alu 1 311 0 900 209 71 24 chrX 90894242 90894453 -71705477 + L1M4b LINE L1 12 232 -6627 1242 286 5 29 chrX 90894464 90895035 -71704895 - MER76 LTR ERV -34 654 6 1465 126 9 9 chrX 90895376 90895599 -71704331 + LTR8 LTR ERV1 1 223 -468 1134 166 51 33 chrX 90895599 90896035 -71703895 - MER61D LTR ERV1 0 501 1 * 2389 132 4 133 chrX 90896035 90896575 -71703355 + LTR8 LTR ERV1 222 690 -1 23 33 0 0 chrX 90896760 90896790 -71703140 + AT_rich Low_complexity Low_complexity 1 30 0 1204 309 55 30 chrX 90896831 90897303 -71702627 + L1M4b LINE L1 341 824 -6035 1786 191 42 12 chrX 90897621 90898045 -71701885 - LTR23 LTR ERV1 0 437 1 1143 171 0 61 chrX 90898758 90898986 -71700944 - AluJo SINE Alu -14 298 85 1219 208 101 125 chrX 90899030 90899124 -71700806 + LTR36 LTR ERV1 1 96 -515 4704 124 19 32 chrX 90899124 90899913 -71700017 + MER4E LTR ERV1 1 779 0 1219 208 101 125 chrX 90899913 90900444 -71699486 + LTR36 LTR ERV1 96 611 0 3223 118 36 84 chrX 90900492 90901122 -71698808 + MER4A LTR ERV1 1 600 0 3167 136 87 33 chrX 90901398 90902009 -71697921 + LTR9B LTR ERV1 1 644 0 23 54 0 0 chrX 90902910 90902947 -71696983 + AT_rich Low_complexity Low_complexity 1 37 0 19509 175 27 19 chrX 90903264 90906963 -71692967 + L1MA1 LINE L1 17 3744 -3821 1641 203 0 7 chrX 90906963 90907264 -71692666 + AluSx SINE Alu 2 300 -12 19509 175 27 19 chrX 90907264 90907367 -71692563 + L1MA1 LINE L1 3744 3845 -3720 5839 163 5 3 chrX 90907362 90908801 -71691129 + L1MA1 LINE L1 6185 7624 -97 * 23 68 0 0 chrX 90908827 90908871 -71691059 + AT_rich Low_complexity Low_complexity 1 44 0 460 361 6 0 chrX 90909995 90910161 -71689769 + L2 LINE L2 1821 1987 -1327 5440 161 26 8 chrX 90910162 90911353 -71688577 + L1MA7 LINE L1 5070 6286 -5 203 274 206 0 chrX 90911703 90911805 -71688125 + L2 LINE L2 3187 3309 -4 673 252 0 0 chrX 90911888 90912015 -71687915 + FLAM_A SINE Alu 1 127 -6 471 320 43 20 chrX 90912160 90912460 -71687470 + L1ME1 LINE L1 17 323 -6100 1099 265 97 78 chrX 90912950 90913307 -71686623 + L1ME1 LINE L1 740 1089 -5334 2568 118 3 0 chrX 90913307 90913670 -71686260 - THE1B LTR MaLR 0 364 1 1099 265 97 78 chrX 90913670 90914015 -71685915 + L1ME1 LINE L1 1089 1455 -4968 970 191 37 131 chrX 90914016 90914399 -71685531 - MLT1A1 LTR MaLR 0 365 19 305 262 30 73 chrX 90914443 90914679 -71685251 + L1ME1 LINE L1 1436 1654 -4896 1955 172 46 31 chrX 90914686 90915228 -71684702 - MLT2A2 LTR ERVL 0 554 1 311 307 40 30 chrX 90915250 90915452 -71684478 + L1ME1 LINE L1 1702 1905 -5036 767 263 43 28 chrX 90915469 90915864 -71684066 + L1ME1 LINE L1 2600 3000 -4122 913 266 5 5 chrX 90915865 90916083 -71683847 + MER58A DNA MER1_type 1 218 -6 693 168 30 0 chrX 90916156 90916287 -71683643 - MER73 LTR ERVL 0 644 510 633 282 51 15 chrX 90916317 90916590 -71683340 + L1ME1 LINE L1 4365 4647 -2294 4392 241 58 55 chrX 90916619 90917819 -71682111 + L1MB8 LINE L1 33 1241 -5301 2322 101 3 0 chrX 90917819 90918127 -71681803 + AluSc SINE Alu 1 309 0 4392 241 58 55 chrX 90918127 90918590 -71681340 + L1MB8 LINE L1 1241 1701 -4841 616 252 116 31 chrX 90918610 90918928 -71681002 + L1MB8 LINE L1 1845 2189 -4457 3264 226 79 16 chrX 90919025 90920301 -71679629 + L1MB8 LINE L1 5321 6676 0 1619 266 74 25 chrX 90920298 90920604 -71679326 + L1ME1 LINE L1 4636 4925 -2016 * 345 82 0 0 chrX 90920604 90920653 -71679277 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1619 266 74 25 chrX 90920653 90921411 -71678519 + L1ME1 LINE L1 4925 5789 -1152 4721 171 17 17 chrX 90921417 90922380 -71677550 - L1 LINE L1 -1226 4920 3958 1067 234 87 21 chrX 90922594 90922975 -71676955 + L1ME1 LINE L1 6416 6796 -165 797 208 94 10 chrX 90922976 90923168 -71676762 - LTR49 LTR ERV1 0 595 388 2616 198 24 26 chrX 90923171 90923746 -71676184 + LTR60 LTR ERV1 7 580 -6 456 237 79 97 chrX 90923547 90923826 -71676104 + TAR1 Satellite telomeric 6 279 -1832 * 2310 133 43 3 chrX 90923864 90924239 -71675691 - LTR49 LTR ERV1 -205 390 1 278 236 10 55 chrX 90924272 90924419 -71675511 + L1ME1 LINE L1 6834 6956 -5 463 169 11 0 chrX 90924423 90924512 -71675418 + L1MA6 LINE L1 4940 5029 -1117 4339 173 66 8 chrX 90924522 90924551 -71675379 - L1 LINE L1 -1201 4945 4919 5999 78 42 1 chrX 90924551 90925345 -71674585 - LTR12 LTR ERV1 0 826 1 4339 173 66 8 chrX 90925345 90926212 -71673718 - L1 LINE L1 -1227 4919 3997 2307 162 78 25 chrX 90926223 90926294 -71673636 + L1MA6 LINE L1 5541 5607 -693 2230 124 0 0 chrX 90926294 90926601 -71673329 - AluSq SINE Alu -6 307 1 2307 162 78 25 chrX 90926601 90927016 -71672914 + L1MA6 LINE L1 5607 6053 -247 714 215 0 0 chrX 90927019 90927154 -71672776 + AluJb SINE Alu 134 268 -44 354 23 0 0 chrX 90927164 90927207 -71672723 + (CA)n Simple_repeat Simple_repeat 2 44 0 679 229 39 0 chrX 90927277 90927456 -71672474 - L1MA8 LINE L1 -36 6255 6070 802 171 0 0 chrX 90927514 90927637 -71672293 - FLAM_C SINE Alu -20 123 1 1660 251 63 23 chrX 90927637 90928259 -71671671 - L1ME1 LINE L1 -50 6116 5538 540 179 0 0 chrX 90928267 90928362 -71671568 - L1 LINE L1 -1195 4951 4857 8190 173 21 49 chrX 90928435 90929486 -71670444 - L1MA2 LINE L1 -4 7719 6640 1846 204 59 5 chrX 90929486 90929892 -71670038 + MSTA LTR MaLR 1 428 0 8190 173 21 49 chrX 90929892 90931897 -71668033 - L1MA2 LINE L1 -1083 6640 4757 2504 74 0 0 chrX 90931897 90932196 -71667734 - AluSg SINE Alu -9 301 3 8190 173 21 49 chrX 90932196 90932281 -71667649 - L1MA2 LINE L1 -2966 4757 4671 1372 209 4 4 chrX 90932291 90932554 -71667376 - AluJb SINE Alu -1 311 49 9947 196 46 59 chrX 90932555 90933967 -71665963 - L1MA2 LINE L1 -2837 4728 3300 306 67 0 0 chrX 90933967 90934012 -71665918 + (CA)n Simple_repeat Simple_repeat 2 46 0 9947 196 46 59 chrX 90934012 90937064 -71662866 - L1MA2 LINE L1 -4265 3300 14 21 0 0 0 chrX 90937325 90937346 -71662584 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrX 90938611 90938639 -71661291 + AT_rich Low_complexity Low_complexity 1 28 0 300 271 121 29 chrX 90939230 90939437 -71660493 - L1MCa LINE L1 -4874 1552 1327 183 259 35 82 chrX 90939471 90939556 -71660374 - MIR3 SINE MIR -46 162 82 1285 177 31 12 chrX 90939695 90939949 -71659981 - AluJo SINE Alu -33 279 21 1723 180 106 11 chrX 90939959 90940336 -71659594 + LOR1b LTR ERV1 49 461 0 275 352 48 0 chrX 90940756 90940881 -71659049 - L2 LINE L2 -598 2716 2586 2530 105 17 8 chrX 90941026 90941387 -71658543 + THE1B LTR MaLR 1 364 0 290 293 64 77 chrX 90941763 90942017 -71657913 - MER41E LTR ERV1 -62 450 199 213 94 0 0 chrX 90942017 90942049 -71657881 + (TTG)n Simple_repeat Simple_repeat 2 33 0 290 293 64 77 chrX 90942049 90942091 -71657839 - MER41E LTR ERV1 -313 199 158 336 302 111 11 chrX 90943207 90943396 -71656534 + L1MEd LINE L1 521 728 -5391 26 93 0 0 chrX 90943523 90943598 -71656332 + AT_rich Low_complexity Low_complexity 1 75 0 213 121 0 0 chrX 90944448 90944481 -71655449 + (T)n Simple_repeat Simple_repeat 1 33 0 2448 283 55 19 chrX 90944673 90945557 -71654373 + L1MEc LINE L1 22 937 -5459 5304 74 34 5 chrX 90945702 90946446 -71653484 + MER4E LTR ERV1 1 765 -1 2770 159 26 0 chrX 90946446 90946904 -71653026 - Tigger3b DNA MER2_type -761 470 1 2402 69 0 0 chrX 90947084 90947389 -71652541 - AluY SINE Alu -6 305 1 2490 200 11 33 chrX 90948724 90949319 -71650611 - ERVL LTR ERVL -1690 4074 3446 2311 87 13 7 chrX 90949319 90949629 -71650301 - AluSx SINE Alu 0 312 1 2490 200 11 33 chrX 90949629 90949741 -71650189 - ERVL LTR ERVL -2318 3446 3333 274 77 90 39 chrX 90949741 90949819 -71650111 + CT-rich Low_complexity Low_complexity 2 83 0 1751 162 34 0 chrX 90949822 90950119 -71649811 - AluJb SINE Alu -1 311 5 1545 231 26 0 chrX 90950144 90950452 -71649478 - ERVL LTR ERVL -2426 3338 3023 * 2562 204 49 4 chrX 90950449 90950958 -71648972 - ERVL LTR ERVL -3431 2333 1802 21 36 0 0 chrX 90951202 90951230 -71648700 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chrX 90951296 90951340 -71648590 + AT_rich Low_complexity Low_complexity 1 44 0 201 74 0 0 chrX 90951987 90952014 -71647916 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2621 186 29 29 chrX 90952043 90952635 -71647295 - L1MB3 LINE L1 -2 6417 5826 4897 254 53 12 chrX 90952641 90955001 -71644929 - L1MB3 LINE L1 -1280 5102 2125 11709 185 59 9 chrX 90955017 90955175 -71644755 - L1 LINE L1 -1705 5860 5711 2273 88 0 10 chrX 90955175 90955481 -71644449 - AluY SINE Alu -5 306 4 11709 185 59 9 chrX 90955481 90957930 -71642000 - L1 LINE L1 -1854 5711 2941 276 36 36 36 chrX 90957930 90957985 -71641945 + (TTTAA)n Simple_repeat Simple_repeat 1 55 0 11709 185 59 9 chrX 90957985 90959741 -71640189 - L1 LINE L1 -4624 2941 1274 2266 106 3 0 chrX 90960012 90960324 -71639606 - AluSp SINE Alu 0 313 1 864 222 61 22 chrX 90960375 90960686 -71639244 - L1 LINE L1 -1661 4485 4163 1882 258 57 16 chrX 90961226 90961843 -71638087 - L1MC4 LINE L1 -141 7901 7260 738 264 25 21 chrX 90961863 90962105 -71637825 - L1MC4 LINE L1 -956 7086 6844 586 110 25 43 chrX 90962105 90962268 -71637662 + (TA)n Simple_repeat Simple_repeat 2 161 0 404 301 36 16 chrX 90962753 90962946 -71636984 - MER117 DNA MER1_type 0 197 1 1175 183 56 3 chrX 90964225 90964509 -71635421 - L1MA7 LINE L1 -1 6290 5992 1356 127 238 0 chrX 90965586 90965830 -71634100 - AluSq SINE Alu 0 303 2 561 361 5 0 chrX 90966179 90966370 -71633560 + MIR SINE MIR 63 254 -8 1152 126 30 0 chrX 90967620 90967818 -71632112 - L1MA6 LINE L1 0 6300 6097 725 169 47 14 chrX 90967818 90967966 -71631964 + L1MA6 LINE L1 5948 6100 -200 24 0 0 0 chrX 90967992 90968016 -71631914 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chrX 90968126 90968169 -71631761 + AT_rich Low_complexity Low_complexity 1 43 0 2120 108 0 23 chrX 90968363 90968668 -71631262 - AluY SINE Alu -13 298 1 4917 164 22 12 chrX 90970031 90970925 -71629005 - MER4D LTR ERV1 0 903 1 1454 197 15 0 chrX 90971606 90971880 -71628050 + AluJo SINE Alu 17 294 -18 269 220 17 0 chrX 90972459 90972518 -71627412 + L2 LINE L2 3251 3310 -3 27 29 0 0 chrX 90972753 90972787 -71627143 + AT_rich Low_complexity Low_complexity 1 34 0 1569 216 18 36 chrX 90972793 90972986 -71626944 + L1MB7 LINE L1 5642 5826 -358 2302 75 3 25 chrX 90972986 90973304 -71626626 + AluY SINE Alu 1 311 0 1569 216 18 36 chrX 90973304 90973498 -71626432 + L1MB7 LINE L1 5826 6022 -162 2969 150 89 46 chrX 90973498 90973837 -71626093 - LTR9 LTR ERV1 0 612 236 5965 13 3 0 chrX 90973837 90974521 -71625409 - L1PA3 LINE L1 -1 6154 5469 2969 150 89 46 chrX 90974521 90974768 -71625162 - LTR9 LTR ERV1 -376 236 1 1295 134 26 5 chrX 90974768 90974962 -71624968 - HUERS-P3 LTR ERV1 -1 8918 8721 418 222 18 0 chrX 90975117 90975236 -71624694 - HUERS-P3 LTR ERV1 -571 4309 2446 * 751 189 11 11 chrX 90975229 90975414 -71624516 - HUERS-P3 LTR ERV1 -2443 2572 2388 8158 130 12 4 chrX 90975422 90976640 -71623290 - HUERS-P3 LTR ERV1 -473 6945 5718 2738 166 18 4 chrX 90976634 90977092 -71622838 - HUERS-P3 LTR ERV1 -8453 466 3 * 3171 150 64 35 chrX 90977094 90977689 -71622241 - LTR9 LTR ERV1 0 612 1 615 190 7 15 chrX 90977691 90977828 -71622102 + L1MB8 LINE L1 6040 6175 -3 30 0 0 0 chrX 90978150 90978180 -71621750 + AT_rich Low_complexity Low_complexity 1 30 0 183 375 42 0 chrX 90978449 90978545 -71621385 - L2 LINE L2 -4 3309 3210 266 236 0 0 chrX 90979649 90979704 -71620226 + L3 LINE CR1 1505 1559 -18 936 270 8 38 chrX 90979929 90980196 -71619734 + MLT2B1 LTR ERVL 9 267 -253 7643 188 33 5 chrX 90980225 90981626 -71618304 + ERVL-B3 LTR ERVL 2129 3568 -2196 7078 195 57 18 chrX 90981646 90983321 -71616609 + ERVL-B3 LTR ERVL 3921 5757 -7 1635 273 21 62 chrX 90983321 90983897 -71616033 + MLT2B3 LTR ERVL 1 552 -2 827 169 37 16 chrX 90984296 90984485 -71615445 - L1MB3 LINE L1 -8 6175 5983 1245 150 9 0 chrX 90984502 90984715 -71615215 + L1PB1 LINE L1 5934 6148 -3 1410 128 44 0 chrX 90984735 90984961 -71614969 + L1MA3 LINE L1 5593 5828 -477 4188 118 12 20 chrX 90985399 90986058 -71613872 - MER4D LTR ERV1 -218 654 1 433 327 32 48 chrX 90986202 90986453 -71613477 + MLT1I LTR MaLR 161 407 -2 25 31 0 0 chrX 90986879 90986911 -71613019 + AT_rich Low_complexity Low_complexity 1 32 0 206 157 0 96 chrX 90987222 90987305 -71612625 + A-rich Low_complexity Low_complexity 1 75 0 183 132 40 40 chrX 90987432 90987508 -71612422 + (TA)n Simple_repeat Simple_repeat 1 76 0 21 71 0 0 chrX 90987551 90987593 -71612337 + AT_rich Low_complexity Low_complexity 1 42 0 203 152 0 0 chrX 90987811 90987844 -71612086 + A-rich Low_complexity Low_complexity 4 36 0 702 249 12 23 chrX 90988503 90988676 -71611254 + MIR SINE MIR 59 229 -33 3100 160 35 30 chrX 90988783 90989390 -71610540 - MER4B LTR ERV1 0 610 1 3314 121 42 73 chrX 90989392 90990011 -71609919 + MER4A LTR ERV1 1 600 0 29 0 0 0 chrX 90990198 90990227 -71609703 + AT_rich Low_complexity Low_complexity 1 29 0 3477 146 12 8 chrX 90990556 90991147 -71608783 - LTR49 LTR ERV1 0 595 3 23 0 0 0 chrX 90991751 90991774 -71608156 + AT_rich Low_complexity Low_complexity 1 23 0 4957 147 14 43 chrX 90991791 90992719 -71607211 - MER4D LTR ERV1 -2 901 1 219 167 56 37 chrX 90992759 90992813 -71607117 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 672 259 24 6 chrX 90992813 90992979 -71606951 - MIR SINE MIR -76 186 18 260 275 0 0 chrX 90993699 90993768 -71606162 + L1ME LINE L1 5523 5591 -530 294 173 86 12 chrX 90993771 90993852 -71606078 - MLT1J LTR MaLR -3 508 422 345 304 43 0 chrX 90993968 90994083 -71605847 + Charlie8 DNA MER1_type 114 233 -2184 1012 172 17 4 chrX 90995678 90995916 -71604014 - L1MA8 LINE L1 -1 6290 6050 23 33 0 0 chrX 90995940 90995970 -71603960 + AT_rich Low_complexity Low_complexity 1 30 0 2084 113 14 0 chrX 90996365 90996658 -71603272 + AluSx SINE Alu 1 297 -15 27 0 0 0 chrX 90996915 90996942 -71602988 + AT_rich Low_complexity Low_complexity 1 27 0 2112 93 0 27 chrX 90996942 90997243 -71602687 - AluSc SINE Alu -16 293 1 23 33 0 0 chrX 90997362 90997392 -71602538 + AT_rich Low_complexity Low_complexity 1 30 0 1880 218 55 84 chrX 90997899 90998422 -71601508 + LTR53 LTR ERVL 10 517 -2 298 340 30 10 chrX 90998540 90998640 -71601290 - L2 LINE L2 -17 3255 3154 6666 168 14 18 chrX 91000038 91002322 -71597608 + L1PA14 LINE L1 4100 6333 0 466 246 24 24 chrX 91003137 91003304 -71596626 + L1MEc LINE L1 1965 2131 -4265 1080 266 46 84 chrX 91003313 91003835 -71596095 - MER68 LTR ERV1 -15 547 46 1799 252 66 32 chrX 91003908 91004883 -71595047 + L1MEc LINE L1 2135 3091 -3124 1865 161 98 15 chrX 91004892 91005228 -71594702 + THE1B LTR MaLR 1 364 0 10884 109 13 18 chrX 91005228 91006810 -71593120 + THE1B-int LTR MaLR 1 1574 -6 1828 152 83 37 chrX 91006815 91007163 -71592767 + THE1B LTR MaLR 1 364 0 2141 138 32 22 chrX 91007168 91007539 -71592391 + THE1C LTR MaLR 1 375 0 9649 133 43 7 chrX 91007539 91009063 -71590867 + THE1C-int LTR MaLR 1 1580 0 1998 175 8 13 chrX 91009063 91009440 -71590490 + THE1C LTR MaLR 1 375 0 601 191 16 0 chrX 91009440 91009566 -71590364 + L1MA8 LINE L1 6139 6266 -25 419 266 52 94 chrX 91009574 91009882 -71590048 + L1MEc LINE L1 3097 3391 -2824 25 31 0 0 chrX 91010896 91010928 -71589002 + AT_rich Low_complexity Low_complexity 1 32 0 229 216 54 54 chrX 91011583 91011657 -71588273 + Zaphod DNA AcHobo 3946 4019 -12 12531 104 21 1 chrX 91012359 91014079 -71585851 + HERVL LTR ERVL 3488 5242 -412 658 101 0 10 chrX 91014609 91014708 -71585222 + MER4A LTR ERV1 1 98 -566 2768 116 5 10 chrX 91014708 91015114 -71584816 + MER4A LTR ERV1 261 664 0 3469 161 132 32 chrX 91015118 91015967 -71583963 + MER4A-int LTR ERV1 3 936 -5662 21538 126 13 25 chrX 91015982 91019785 -71580145 - L1PA8A LINE L1 -638 5847 2099 394 206 33 0 chrX 91019768 91019860 -71580070 - L1PA8A LINE L1 -5778 97 3 * 2492 154 136 16 chrX 91019865 91020167 -71579763 + MER4A-int LTR ERV1 1815 2079 -4519 1798 167 0 14 chrX 91020167 91020461 -71579469 + AluSx SINE Alu 1 290 -22 2492 154 136 16 chrX 91020461 91020730 -71579200 + MER4A-int LTR ERV1 2079 2455 -4143 2850 136 21 19 chrX 91020730 91021322 -71578608 - MER4E LTR ERV1 0 766 1 2205 170 96 64 chrX 91021322 91022328 -71577602 + MER4A-int LTR ERV1 1611 3686 -2912 * 13126 149 53 27 chrX 91022322 91025014 -71574916 + MER4A-int LTR ERV1 3837 6598 0 677 111 0 10 chrX 91025015 91025114 -71574816 + MER4A LTR ERV1 1 98 -566 333 73 18 55 chrX 91025114 91025167 -71574763 + MER4A LTR ERV1 261 311 -353 627 130 174 21 chrX 91025167 91025303 -71574627 + LTR22 LTR ERVK 1 172 -373 1362 61 0 17 chrX 91025303 91025484 -71574446 - L1PA5 LINE L1 -4 6150 5973 7452 60 0 24 chrX 91025484 91026487 -71573443 - L1P LINE L1 -1347 4799 3821 1115 203 27 31 chrX 91026516 91026772 -71573158 + LTR22 LTR ERVK 252 506 -3 4694 140 1 1 chrX 91026776 91027469 -71572461 + HERVK22 LTR ERVK 3 695 -6142 671 212 0 0 chrX 91027830 91027948 -71571982 + HERVK22 LTR ERVK 2329 2446 -4391 20170 100 4 0 chrX 91027951 91030695 -71569235 + HERVK22 LTR ERVK 2623 5377 -1460 1990 63 0 20 chrX 91030695 91030949 -71568981 - AluY SINE Alu -62 249 1 2407 83 3 0 chrX 91030950 91031252 -71568678 - AluSp SINE Alu -10 303 1 10555 90 5 29 chrX 91031337 91032809 -71567121 + HERVK22 LTR ERVK 5401 6837 0 2087 191 76 11 chrX 91032811 91033283 -71566647 + LTR22 LTR ERVK 3 505 -4 644 126 0 0 chrX 91033288 91033383 -71566547 + MER4A LTR ERV1 305 399 -265 10344 190 56 21 chrX 91233385 91234246 -71365684 + L1M1 LINE L1 2190 3020 -4666 2118 65 8 0 chrX 91234246 91234509 -71365421 + AluY SINE Alu 39 303 -8 10344 190 56 21 chrX 91234509 91234973 -71364957 + L1M1 LINE L1 3020 3467 -4219 2128 141 3 0 chrX 91234973 91235285 -71364645 + AluSq SINE Alu 1 313 0 10344 190 56 21 chrX 91235285 91236004 -71363926 + L1M1 LINE L1 3467 4160 -3526 2831 16 0 0 chrX 91236004 91236318 -71363612 - AluYb8 SINE Alu -4 314 1 10344 190 56 21 chrX 91236318 91238849 -71361081 + L1M1 LINE L1 4160 6943 -743 759 305 9 5 chrX 91238999 91239222 -71360708 - MER58A DNA MER1_type 0 224 1 399 301 175 11 chrX 91240360 91240835 -71359095 + HAL1 LINE L1 1233 1785 -722 3960 103 0 0 chrX 91241469 91242023 -71357907 - MER41A LTR ERV1 0 554 1 22 35 0 0 chrX 91242911 91242940 -71356990 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chrX 91243113 91243151 -71356779 + AT_rich Low_complexity Low_complexity 1 38 0 493 115 0 0 chrX 91243885 91243963 -71355967 - L1MA6 LINE L1 0 6300 6223 265 273 130 25 chrX 91243975 91244136 -71355794 - MER112 DNA MER1_type -7 253 76 2142 112 3 0 chrX 91245357 91245653 -71354277 - AluSx SINE Alu -15 297 1 21 71 0 0 chrX 91245719 91245761 -71354169 + AT_rich Low_complexity Low_complexity 1 42 0 717 232 66 11 chrX 91247016 91247197 -71352733 + MLT1D LTR MaLR 314 504 -1 402 294 117 44 chrX 91247205 91247453 -71352477 - L1MC4a LINE L1 -1158 6650 6385 1782 249 28 36 chrX 91247823 91248318 -71351612 - L1MD2 LINE L1 -13 6346 5856 1332 133 0 0 chrX 91248327 91248522 -71351408 + L1PA12 LINE L1 20 214 -7367 1052 172 6 0 chrX 91248513 91248682 -71351248 + L1PA12 LINE L1 891 1060 -6521 * 3481 238 60 24 chrX 91248682 91250318 -71349612 + L1MD2 LINE L1 4651 6346 -13 218 297 0 0 chrX 91250357 91250421 -71349509 + (TA)n Simple_repeat Simple_repeat 1 64 0 293 171 0 14 chrX 91251508 91251578 -71348352 + (TA)n Simple_repeat Simple_repeat 2 70 0 1505 240 96 51 chrX 91251735 91252327 -71347603 + L1M4 LINE L1 3618 4236 -1910 1554 102 0 0 chrX 91253008 91253214 -71346716 + AluSc SINE Alu 88 293 -16 275 51 0 0 chrX 91253214 91253253 -71346677 + MADE1 DNA Mariner 42 80 0 693 183 0 0 chrX 91253256 91253376 -71346554 + L1PA15 LINE L1 5562 5681 -484 1587 45 0 15 chrX 91253380 91253582 -71346348 + AluY SINE Alu 1 199 -112 991 58 22 0 chrX 91253582 91253720 -71346210 + AluY SINE Alu 152 292 -19 2480 179 37 0 chrX 91253720 91254183 -71345747 + L1PA15 LINE L1 5677 6156 -9 4386 216 50 12 chrX 91254186 91254298 -71345632 + L1 LINE L1 2927 3033 -3113 1902 130 3 29 chrX 91254298 91254606 -71345324 - AluJb SINE Alu -12 300 1 4386 216 50 12 chrX 91254606 91255658 -71344272 + L1 LINE L1 3033 4135 -2011 2070 267 64 20 chrX 91255656 91257104 -71342826 - L1MCb LINE L1 -4336 2409 695 * 1710 243 28 10 chrX 91257246 91257637 -71342293 + MLT1C LTR MaLR 70 467 0 1197 101 27 5 chrX 91257662 91257850 -71342080 - L1PA14 LINE L1 0 6161 5970 330 266 99 47 chrX 91257912 91258295 -71341635 - L1MEc LINE L1 -3882 2514 2112 21 36 0 0 chrX 91258661 91258689 -71341241 + AT_rich Low_complexity Low_complexity 1 28 0 398 321 24 0 chrX 91258696 91258861 -71341069 - L1MEc LINE L1 -4788 1608 1440 2082 100 4 4 chrX 91259128 91259437 -71340493 + AluSg SINE Alu 1 309 0 218 301 97 11 chrX 91260192 91260285 -71339645 + L2 LINE L2 2948 3048 -224 1017 283 104 27 chrX 91260308 91260824 -71339106 + MLT1E2 LTR MaLR 21 611 -15 1359 200 3 52 chrX 91260865 91261170 -71338760 + MLT1F1 LTR MaLR 278 567 0 261 316 0 0 chrX 91261171 91261247 -71338683 + MLT1F1-int LTR MaLR 2 77 -1294 * 2582 210 5 10 chrX 91261245 91261825 -71338105 - L1 LINE L1 -3281 2865 2289 2576 114 65 37 chrX 91261821 91262286 -71337644 - L1PBa LINE L1 -5751 1112 635 * 1057 184 0 5 chrX 91262287 91262483 -71337447 - L1PBa LINE L1 -6663 200 6 * 3356 253 3 5 chrX 91262482 91263402 -71336528 + L1 LINE L1 2864 3781 -2365 2797 109 23 5 chrX 91263396 91263828 -71336102 + L1PB1 LINE L1 5352 5791 -360 * 307 119 24 36 chrX 91263828 91263912 -71336018 + (TA)n Simple_repeat Simple_repeat 1 83 0 2090 151 0 19 chrX 91264060 91264424 -71335506 + L1PB1 LINE L1 5791 6147 -4 457 262 201 23 chrX 91264435 91264649 -71335281 - MIR SINE MIR 0 262 11 365 319 29 15 chrX 91264837 91265041 -71334889 + MLT1F1-int LTR MaLR 311 517 -854 335 283 0 40 chrX 91265072 91265089 -71334841 - MER81 DNA DNA -16 98 82 2369 86 0 0 chrX 91265089 91265391 -71334539 - AluY SINE Alu -9 302 1 335 283 0 40 chrX 91265391 91265472 -71334458 - MER81 DNA DNA -32 82 4 320 299 0 0 chrX 91265480 91265567 -71334363 + MLT1F1-int LTR MaLR 524 610 -761 278 247 140 40 chrX 91266516 91266666 -71333264 - MIR SINE MIR 0 262 98 660 248 78 9 chrX 91266731 91266949 -71332981 - L1 LINE L1 -2133 4249 4017 1580 184 34 79 chrX 91266951 91266992 -71332938 - THE1B LTR MaLR 0 364 323 2049 129 0 7 chrX 91266992 91267294 -71332636 + AluSx SINE Alu 1 300 -12 1580 184 34 79 chrX 91267294 91267633 -71332297 - THE1B LTR MaLR -41 323 1 9047 145 25 47 chrX 91267639 91269246 -71330684 - THE1B-int LTR MaLR -6 1574 3 1491 157 40 105 chrX 91269248 91269649 -71330281 - THE1C LTR MaLR 0 375 1 958 257 45 16 chrX 91269650 91270031 -71329899 - L1 LINE L1 -2364 4018 3627 578 224 61 0 chrX 91270028 91270175 -71329755 - L1 LINE L1 -3439 2943 2788 * 1311 201 136 6 chrX 91270175 91270498 -71329432 + MLT1A1 LTR MaLR 1 365 0 2684 267 101 64 chrX 91270498 91272092 -71327838 + MLT1A1-int LTR MaLR 2 1622 -29 1680 237 3 8 chrX 91272115 91272482 -71327448 + MLT1A1 LTR MaLR 1 365 0 1324 248 44 15 chrX 91272493 91273355 -71326575 - L1 LINE L1 -3601 2781 1792 1452 201 6 31 chrX 91273376 91273497 -71326433 - L1PA16 LINE L1 -6 6160 6038 2260 133 8 22 chrX 91273497 91273866 -71326064 - THE1B LTR MaLR 0 364 1 1452 201 6 31 chrX 91273866 91274068 -71325862 - L1PA16 LINE L1 -128 6038 5845 10275 223 40 41 chrX 91274068 91277947 -71321983 - L1PA12 LINE L1 -2622 4962 1 17720 202 28 27 chrX 91277956 91278947 -71320983 - L1 LINE L1 -2960 4605 3617 258 32 0 0 chrX 91278947 91278978 -71320952 + (TG)n Simple_repeat Simple_repeat 2 32 0 17720 202 28 27 chrX 91278978 91282575 -71317355 - L1 LINE L1 -3948 3617 17 312 261 63 28 chrX 91282575 91282717 -71317213 - L1M4 LINE L1 -1152 4994 4848 259 229 0 0 chrX 91282737 91282785 -71317145 - AluJ/monomer SINE Alu -254 48 1 674 196 59 0 chrX 91282785 91282938 -71316992 - L1M4 LINE L1 -1763 4383 4222 2297 127 16 21 chrX 91282941 91283318 -71316612 + THE1C LTR MaLR 1 375 0 9126 129 46 57 chrX 91283318 91284927 -71315003 + THE1C-int LTR MaLR 1 1580 0 2380 135 8 19 chrX 91284927 91285306 -71314624 + THE1C LTR MaLR 1 375 0 2566 242 38 1 chrX 91285306 91285989 -71313941 - L1M4 LINE L1 -1931 4215 3508 5191 167 10 45 chrX 91286187 91287349 -71312581 - L1PA13 LINE L1 -2 6161 5085 2168 99 0 3 chrX 91287349 91287632 -71312298 - AluSx SINE Alu -30 282 1 5191 167 10 45 chrX 91287632 91288105 -71311825 - L1PA13 LINE L1 -1078 5085 4597 816 232 11 5 chrX 91288449 91288639 -71311291 - MLT1B LTR MaLR -3 387 197 204 339 0 0 chrX 91288651 91288707 -71311223 + polypurine Low_complexity Low_complexity 2 57 0 1259 198 63 95 chrX 91288758 91289165 -71310765 + L1MC1 LINE L1 1749 2168 -4214 2353 45 0 52 chrX 91289165 91289474 -71310456 - AluY SINE Alu -18 293 1 1259 198 63 95 chrX 91289474 91289856 -71310074 + L1MC1 LINE L1 2168 2607 -3775 3304 214 23 0 chrX 91289856 91290584 -71309346 + L1MC1 LINE L1 5819 6563 -6 1259 198 63 95 chrX 91290584 91290597 -71309333 + L1MC1 LINE L1 2607 2619 -3763 231 170 0 0 chrX 91291220 91291267 -71308663 + (TA)n Simple_repeat Simple_repeat 1 47 0 1381 225 21 8 chrX 91292380 91292762 -71307168 + L1M4 LINE L1 4352 4738 -1408 184 111 44 0 chrX 91292852 91292897 -71307033 + (TA)n Simple_repeat Simple_repeat 1 47 0 320 290 30 6 chrX 91292943 91293112 -71306818 + (TA)n Simple_repeat Simple_repeat 2 174 0 740 255 161 56 chrX 91293170 91294023 -71305907 + L1MEc LINE L1 1968 2899 -3316 3412 102 35 96 chrX 91294023 91294670 -71305260 - LTR66 LTR ERVL 0 610 3 740 255 161 56 chrX 91294670 91294747 -71305183 + L1MEc LINE L1 2899 2967 -3248 2267 95 3 0 chrX 91294928 91295234 -71304696 + AluSq SINE Alu 1 307 -6 253 295 0 0 chrX 91295876 91295937 -71303993 - MLT1A1-int LTR MaLR -639 732 672 761 104 30 0 chrX 91295937 91296072 -71303858 + (TA)n Simple_repeat Simple_repeat 1 139 0 3007 208 12 30 chrX 91296073 91296728 -71303202 - MLT1A1-int LTR MaLR -1092 643 1 1323 268 6 23 chrX 91296741 91297095 -71302835 - MLT1A1 LTR MaLR -17 348 1 3692 239 42 16 chrX 91297101 91298655 -71301275 - L1M3 LINE L1 -407 5776 4147 1653 189 21 40 chrX 91299399 91299822 -71300108 - L1MB4 LINE L1 -2 6178 5764 322 283 19 0 chrX 91299818 91299924 -71300006 + L1M4 LINE L1 4513 4620 -1526 * 1582 161 73 3 chrX 91300033 91300349 -71299581 - L1MA10 LINE L1 -8 6326 5989 2930 182 22 40 chrX 91300366 91300618 -71299312 - L1ME1 LINE L1 -325 5841 5586 3544 121 19 9 chrX 91300618 91301188 -71298742 - L1MA1 LINE L1 -8 6294 5719 2930 182 22 40 chrX 91301188 91302061 -71297869 - L1ME1 LINE L1 -580 5586 4779 6004 148 37 6 chrX 91302061 91303076 -71296854 + MER50-int LTR ERV1 4981 6027 -1178 1950 174 0 3 chrX 91303075 91303392 -71296538 + MER50-int LTR ERV1 6882 7197 -8 * 2335 163 17 4 chrX 91303392 91304043 -71295887 + MER50 LTR ERV1 1 711 -23 836 186 9 91 chrX 91304094 91304315 -71295615 - LTR29 LTR ERV1 -236 386 184 1554 183 48 0 chrX 91305705 91305978 -71293952 - AluJo SINE Alu -26 286 1 1881 144 77 14 chrX 91306020 91306373 -71293557 + THE1C LTR MaLR 1 375 0 9067 143 58 9 chrX 91306373 91307879 -71292051 + THE1C-int LTR MaLR 1 1580 0 1730 160 83 11 chrX 91307879 91308229 -71291701 + THE1C LTR MaLR 1 375 0 330 383 16 21 chrX 91308231 91308419 -71291511 - MIR SINE MIR -70 192 6 1122 231 131 27 chrX 91308667 91308793 -71291137 + MER31B LTR ERV1 1 113 -548 1757 186 24 37 chrX 91308793 91309169 -71290761 - MER93b LTR ERV1 0 373 3 1122 231 131 27 chrX 91309169 91309462 -71290468 + MER31B LTR ERV1 113 661 0 231 186 0 0 chrX 91310058 91310101 -71289829 + L2 LINE L2 3255 3297 -16 883 265 70 59 chrX 91310946 91311402 -71288528 - LTR38 LTR ERV1 0 556 96 216 0 0 0 chrX 91311440 91311464 -71288466 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 27 81 0 0 chrX 91311659 91311721 -71288209 + AT_rich Low_complexity Low_complexity 1 62 0 195 129 0 0 chrX 91311790 91311821 -71288109 + (TATG)n Simple_repeat Simple_repeat 2 32 0 346 113 0 0 chrX 91311904 91311917 -71288013 - L1P5 LINE L1 -662 5489 5477 2377 97 0 67 chrX 91311917 91312319 -71287611 - L1PB1 LINE L1 0 6151 5777 346 113 0 0 chrX 91312319 91312358 -71287572 - L1P5 LINE L1 -673 5478 5437 * 1512 225 23 27 chrX 91312349 91312981 -71286949 - L1 LINE L1 -3618 3947 3316 395 327 25 13 chrX 91313192 91313351 -71286579 - L1 LINE L1 -7007 559 399 307 305 85 8 chrX 91313349 91313585 -71286345 - L1M4 LINE L1 -944 5202 4949 * 30 0 0 0 chrX 91313623 91313653 -71286277 + AT_rich Low_complexity Low_complexity 1 30 0 1878 262 43 11 chrX 91313653 91314320 -71285610 - L1M4 LINE L1 -1358 4788 4100 589 298 67 30 chrX 91314314 91314884 -71285046 - L1M4 LINE L1 -2375 3771 3181 * 1141 240 47 6 chrX 91314954 91315275 -71284655 - L1MC3 LINE L1 -44 7741 7408 2027 217 48 32 chrX 91315278 91315868 -71284062 + MLT2B3 LTR ERVL 5 515 0 4385 209 113 56 chrX 91315868 91317200 -71282730 - L1MC3 LINE L1 -372 7413 6006 432 267 59 0 chrX 91317205 91317343 -71282587 + AluJb SINE Alu 179 322 0 543 256 62 22 chrX 91317361 91317635 -71282295 - L1M4 LINE L1 -743 5403 5119 * 6269 177 28 14 chrX 91317631 91320088 -71279842 - L1MA2 LINE L1 0 7723 5234 1390 170 112 32 chrX 91320088 91320435 -71279495 - THE1C LTR MaLR 0 375 1 8471 158 14 71 chrX 91320436 91320673 -71279257 - THE1C-int LTR MaLR -1 1579 1330 1318 102 76 4 chrX 91320673 91320896 -71279034 + L1PA10 LINE L1 5928 6168 0 8471 158 14 71 chrX 91320896 91322331 -71277599 - THE1C-int LTR MaLR -250 1330 3 1557 150 74 49 chrX 91322333 91322699 -71277231 - THE1C LTR MaLR 0 375 1 1207 241 10 3 chrX 91322699 91322994 -71276936 - L1MA2 LINE L1 -2327 5238 4942 24 0 0 0 chrX 91323008 91323032 -71276898 + AT_rich Low_complexity Low_complexity 1 24 0 1186 115 0 0 chrX 91323032 91323189 -71276741 - AluSg/x SINE Alu -23 289 133 4270 132 24 13 chrX 91323208 91323971 -71275959 - L1MA2 LINE L1 -4102 3463 2693 1496 182 7 7 chrX 91323976 91324245 -71275685 - THE1C LTR MaLR 0 375 107 8022 149 51 51 chrX 91324263 91325842 -71274088 - THE1C-int LTR MaLR 0 1580 1 1817 160 52 19 chrX 91325842 91326205 -71273725 - THE1C LTR MaLR 0 375 1 3746 179 5 14 chrX 91326205 91326943 -71272987 - L1MA2 LINE L1 -4873 2692 1961 4216 217 30 17 chrX 91326946 91328164 -71271766 - L1MA2 LINE L1 -5659 1906 575 4500 246 34 14 chrX 91328269 91329690 -71270240 - L1M1 LINE L1 -5411 2154 16 2773 210 39 21 chrX 91329692 91330526 -71269404 - LTR48B-int LTR ERV1 -918 4205 3361 466 141 0 0 chrX 91330531 91330609 -71269321 - LTR48B-int LTR ERV1 -1945 4386 4309 1679 249 63 5 chrX 91330613 91331007 -71268923 - MSTB LTR MaLR -9 417 1 1347 195 15 8 chrX 91331007 91331274 -71268656 - MSTB-int LTR MaLR 0 1651 1383 3628 229 70 29 chrX 91331297 91332019 -71267911 - MSTB-int LTR MaLR -535 1045 281 453 19 0 0 chrX 91332019 91332073 -71267857 + (TG)n Simple_repeat Simple_repeat 1 54 0 3628 229 70 29 chrX 91332073 91332366 -71267564 - MSTB-int LTR MaLR -1299 281 1 528 148 102 31 chrX 91332366 91332432 -71267498 - MSTB LTR MaLR 0 432 372 2000 150 3 0 chrX 91332432 91332725 -71267205 + AluSx SINE Alu 1 294 -18 528 148 102 31 chrX 91332725 91332786 -71267144 - MSTB LTR MaLR -60 372 296 827 181 22 53 chrX 91332795 91333022 -71266908 - LTR48B-int LTR ERV1 -2016 4315 4096 * 10857 188 83 130 chrX 91333014 91335746 -71264184 - LTR48B-int LTR ERV1 -1874 3698 839 640 156 0 0 chrX 91335746 91335855 -71264075 + L1P LINE L1 3874 3982 -2164 10857 188 83 130 chrX 91335855 91336111 -71263819 - LTR48B-int LTR ERV1 -4733 839 573 1967 136 3 3 chrX 91336111 91336405 -71263525 - AluSx SINE Alu -18 294 1 10857 188 83 130 chrX 91336405 91337651 -71262279 - LTR48B-int LTR ERV1 -4999 573 1 1495 251 108 10 chrX 91337653 91338239 -71261691 - LTR48B LTR ERV1 0 644 2 1715 102 4 0 chrX 91338355 91338581 -71261349 - AluSq SINE Alu -56 257 31 30 0 0 0 chrX 91338736 91338766 -71261164 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chrX 91338797 91338834 -71261096 + AT_rich Low_complexity Low_complexity 1 37 0 221 282 128 13 chrX 91339214 91339292 -71260638 - MER5A DNA MER1_type 0 189 103 180 0 0 0 chrX 91340242 91340262 -71259668 + (TA)n Simple_repeat Simple_repeat 2 21 0 10716 60 5 9 chrX 91340324 91342539 -71257391 - L1PA6 LINE L1 -1 6153 3945 21 36 0 0 chrX 91342706 91342734 -71257196 + AT_rich Low_complexity Low_complexity 1 28 0 973 242 63 16 chrX 91343091 91343533 -71256397 + L1M4 LINE L1 3031 3493 -2653 17659 206 32 14 chrX 91343554 91350711 -71249219 - L1MA1 LINE L1 -421 7300 16 869 254 37 28 chrX 91350714 91351246 -71248684 - L1M4 LINE L1 -3820 2562 2029 1780 173 32 22 chrX 91351352 91351723 -71248207 - THE1C LTR MaLR 0 375 1 6791 161 12 9 chrX 91351723 91353236 -71246694 - THE1C-int LTR MaLR 0 1580 3 1657 173 76 15 chrX 91353238 91353594 -71246336 - THE1C LTR MaLR 0 375 1 1163 269 40 20 chrX 91353636 91353986 -71245944 + MLT1E3 LTR MaLR 260 616 -8 33 80 0 0 chrX 91354014 91354089 -71245841 + AT_rich Low_complexity Low_complexity 1 75 0 32 0 0 0 chrX 91354225 91354257 -71245673 + AT_rich Low_complexity Low_complexity 1 32 0 21 89 0 0 chrX 91354461 91354517 -71245413 + AT_rich Low_complexity Low_complexity 1 56 0 2663 171 38 0 chrX 91354838 91355369 -71244561 - Tigger3(Golem) DNA MER2_type -1 3028 2478 272 263 13 26 chrX 91355377 91355453 -71244477 + Tigger3b DNA MER2_type 1 75 -1156 24 32 0 0 chrX 91355690 91355721 -71244209 + AT_rich Low_complexity Low_complexity 1 31 0 2366 122 3 17 chrX 91356351 91356527 -71243403 - THE1A LTR MaLR 0 355 178 2732 10 0 0 chrX 91356527 91356830 -71243100 + AluYa5 SINE Alu 1 303 -8 2366 122 3 17 chrX 91356830 91357013 -71242917 - THE1A LTR MaLR -177 178 1 11079 106 5 1 chrX 91357013 91358587 -71241343 - THE1A-int LTR MaLR 0 1580 1 2445 96 6 30 chrX 91358587 91358951 -71240979 - THE1A LTR MaLR 0 355 1 2816 122 16 0 chrX 91359020 91359492 -71240438 + L1PA10 LINE L1 5709 6187 0 2338 183 31 76 chrX 91360025 91360632 -71239298 - LTR25 LTR ERV1 0 794 215 327 258 0 113 chrX 91360613 91360737 -71239193 - MER61E LTR ERV1 -459 110 1 * 180 91 68 0 chrX 91360859 91360903 -71239027 + (TA)n Simple_repeat Simple_repeat 2 48 0 5519 162 52 37 chrX 91360923 91361409 -71238521 - Tigger3b DNA MER2_type -1817 1211 733 2130 133 0 0 chrX 91361409 91361709 -71238221 - AluSq SINE Alu -12 301 2 5519 162 52 37 chrX 91361709 91362124 -71237806 - Tigger3b DNA MER2_type -2295 733 287 2235 110 3 3 chrX 91362124 91362433 -71237497 + AluSq SINE Alu 1 309 -4 5519 162 52 37 chrX 91362433 91362707 -71237223 - Tigger3b DNA MER2_type -2741 287 18 183 162 0 0 chrX 91362720 91362757 -71237173 + (TG)n Simple_repeat Simple_repeat 2 38 0 401 269 161 11 chrX 91363584 91363770 -71236160 + MER67C LTR ERV1 1 214 -496 2335 194 89 0 chrX 91363798 91364294 -71235636 + MER67C LTR ERV1 171 710 0 1032 257 173 18 chrX 91364518 91364860 -71235070 - MSTD LTR MaLR 0 396 2 383 313 37 0 chrX 91364860 91364994 -71234936 + MIR SINE MIR 52 190 -72 48 72 0 0 chrX 91365026 91365123 -71234807 + AT_rich Low_complexity Low_complexity 1 97 0 21 0 0 0 chrX 91365161 91365182 -71234748 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chrX 91365864 91365889 -71234041 + AT_rich Low_complexity Low_complexity 1 25 0 719 158 0 0 chrX 91366181 91366301 -71233629 - L1MC/D LINE L1 -838 5495 5376 3846 205 24 31 chrX 91366943 91367852 -71232078 + MER4D LTR ERV1 1 903 0 207 0 0 0 chrX 91368491 91368514 -71231416 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 182 301 130 41 chrX 91368937 91369060 -71230870 + L2 LINE L2 2594 2727 -587 21 36 0 0 chrX 91369156 91369184 -71230746 + AT_rich Low_complexity Low_complexity 1 28 0 194 0 39 0 chrX 91370117 91370143 -71229787 + (TA)n Simple_repeat Simple_repeat 2 28 0 351 0 0 0 chrX 91370146 91370185 -71229745 + (GA)n Simple_repeat Simple_repeat 2 40 0 27 49 0 0 chrX 91370463 91370504 -71229426 + AT_rich Low_complexity Low_complexity 1 41 0 2113 163 22 5 chrX 91370650 91371019 -71228911 + THE1C LTR MaLR 1 375 0 9451 121 38 36 chrX 91371020 91372596 -71227334 + THE1C-int LTR MaLR 2 1580 0 2259 153 8 3 chrX 91372596 91372969 -71226961 + THE1C LTR MaLR 1 375 0 13196 97 3 0 chrX 91374037 91375916 -71224014 + L1P LINE L1 3268 5151 -995 21 0 0 0 chrX 91376299 91376320 -71223610 + AT_rich Low_complexity Low_complexity 1 21 0 636 261 70 37 chrX 91376798 91377013 -71222917 + MIR SINE MIR 5 226 -36 193 293 0 0 chrX 91377050 91377091 -71222839 - MIR SINE MIR -164 98 58 210 288 38 0 chrX 91377267 91377347 -71222583 + MIR SINE MIR 123 205 -57 272 280 100 0 chrX 91377593 91377693 -71222237 - MARNA DNA Mariner -308 278 169 940 301 28 4 chrX 91378273 91378759 -71221171 - MLT1E LTR MaLR -1 592 1 1898 102 0 92 chrX 91379713 91380038 -71219892 + AluY SINE Alu 13 307 -4 308 286 120 69 chrX 91380671 91381178 -71218752 + L1ME4a LINE L1 5348 5880 -241 22 70 0 0 chrX 91381753 91381796 -71218134 + AT_rich Low_complexity Low_complexity 1 43 0 1597 134 12 8 chrX 91382512 91382766 -71217164 - AluSx SINE Alu -57 255 1 5568 199 39 58 chrX 91382770 91383016 -71216914 - L1 LINE L1 -860 5286 5037 2279 103 3 0 chrX 91383016 91383327 -71216603 - AluSp SINE Alu -1 312 1 5568 199 39 58 chrX 91383327 91383946 -71215984 - L1 LINE L1 -1109 5037 4408 387 41 0 0 chrX 91383946 91383995 -71215935 + (TG)n Simple_repeat Simple_repeat 1 49 0 5568 199 39 58 chrX 91383995 91385261 -71214669 - L1 LINE L1 -1738 4408 3209 678 221 0 0 chrX 91385282 91385436 -71214494 - L1P LINE L1 -3597 2549 2396 478 271 21 14 chrX 91385444 91385588 -71214342 - MSTA LTR MaLR -153 275 131 387 167 0 14 chrX 91385572 91385644 -71214286 - MER51A LTR ERV1 -148 486 416 * 576 82 26 171 chrX 91385644 91385896 -71214034 + MER4B-int LTR ERV1 1780 4079 -801 * 599 174 16 37 chrX 91385893 91386083 -71213847 - MER4B-int LTR ERV1 -4598 2160 1975 * 2144 187 35 33 chrX 91386075 91386556 -71213374 + MER4B-int LTR ERV1 421 902 -6914 1471 174 17 65 chrX 91386566 91386968 -71212962 - MER41-int LTR ERV1 -6948 1172 790 264 244 44 69 chrX 91387025 91387103 -71212827 - MER41-int LTR ERV1 -3736 3022 2944 2333 122 6 25 chrX 91387103 91387463 -71212467 + THE1A LTR MaLR 3 355 0 11474 101 10 3 chrX 91387463 91389032 -71210898 + THE1A-int LTR MaLR 1 1580 0 2373 102 11 33 chrX 91389034 91389395 -71210535 + THE1A LTR MaLR 3 355 0 264 244 44 69 chrX 91389395 91389472 -71210458 - MER41-int LTR ERV1 -3814 2944 2867 515 182 0 10 chrX 91389472 91389571 -71210359 + MER4A LTR ERV1 1 98 -566 1633 124 146 77 chrX 91389571 91389619 -71210311 + MER4A LTR ERV1 261 304 -360 1978 162 30 30 chrX 91389619 91389983 -71209947 + THE1B LTR MaLR 1 364 0 1633 124 146 77 chrX 91389983 91390312 -71209618 + MER4A LTR ERV1 304 664 0 1188 190 33 56 chrX 91390312 91390754 -71209176 - MER41-int LTR ERV1 -3825 1298 1190 198 0 0 0 chrX 91390845 91390867 -71209063 + (A)n Simple_repeat Simple_repeat 1 22 0 439 201 23 0 chrX 91390927 91391024 -71208906 - MER41-int LTR ERV1 -3224 2722 857 928 228 65 27 chrX 91391035 91391076 -71208854 - MER41-int LTR ERV1 -4061 2270 2232 3871 64 14 0 chrX 91391076 91391559 -71208371 - LTR2B LTR ERV1 0 490 1 928 228 65 27 chrX 91391559 91391780 -71208150 - MER41-int LTR ERV1 -4099 2232 1998 3584 42 0 7 chrX 91391816 91392267 -71207663 + LTR7 LTR ERV1 1 448 -2 3516 54 0 7 chrX 91392279 91392727 -71207203 + LTR7 LTR ERV1 2 446 -4 3735 82 20 2 chrX 91392731 91393291 -71206639 + HERVH LTR ERV1 1 570 -7143 1285 186 0 90 chrX 91393437 91393716 -71206214 - AluJb SINE Alu -54 258 5 5716 228 26 30 chrX 91393721 91394310 -71205620 - L1PA16 LINE L1 -128 6038 5448 1810 179 147 5 chrX 91394310 91394685 -71205245 + MSTA LTR MaLR 1 428 0 5716 228 26 30 chrX 91394685 91397024 -71202906 - L1PA16 LINE L1 -718 5448 3129 3856 139 13 2 chrX 91397026 91397629 -71202301 - MER4B LTR ERV1 0 610 1 3663 163 18 25 chrX 91397629 91398689 -71201241 - MER4B-int LTR ERV1 0 6758 5658 2610 96 3 3 chrX 91398689 91399044 -71200886 + THE1A LTR MaLR 1 355 0 2321 114 16 3 chrX 91399045 91399414 -71200516 + THE1A-int LTR MaLR 2 375 -1205 2556 136 74 58 chrX 91399416 91399954 -71199976 - MER4B-int LTR ERV1 -1202 5556 5010 * 4798 143 18 6 chrX 91399951 91400926 -71199004 - MER4B-int LTR ERV1 -2276 4482 3421 405 81 14 0 chrX 91400912 91400986 -71198944 - MER4B-int LTR ERV1 -3663 3095 3021 * 953 174 0 0 chrX 91400986 91401153 -71198777 - MER4B-int LTR ERV1 -2871 3887 3721 6558 143 39 33 chrX 91401161 91402873 -71197057 - MER4B-int LTR ERV1 -3745 3013 924 232 118 0 0 chrX 91402881 91402915 -71197015 + THE1B LTR MaLR 1 34 -330 * 1007 145 16 47 chrX 91402909 91403102 -71196828 + THE1B LTR MaLR 178 364 0 10610 122 13 5 chrX 91403102 91404669 -71195261 + THE1B-int LTR MaLR 1 1580 0 2028 129 66 26 chrX 91404669 91405019 -71194911 + THE1B LTR MaLR 1 364 0 1906 175 54 37 chrX 91405020 91405482 -71194448 - MER4B-int LTR ERV1 -5569 1189 720 1014 133 118 28 chrX 91405473 91405684 -71194246 - MER4B-int LTR ERV1 -6368 230 1 * 1678 176 7 4 chrX 91405711 91405983 -71193947 + AluJb SINE Alu 1 273 -39 3491 141 15 5 chrX 91406013 91406607 -71193323 - MER4B LTR ERV1 -10 600 1 3860 254 30 17 chrX 91406607 91408646 -71191284 - L1PA13 LINE L1 -3019 3778 1696 419 356 10 26 chrX 91408647 91408841 -71191089 - L1PA13 LINE L1 -6576 211 21 484 189 19 0 chrX 91408960 91409066 -71190864 - L1M4 LINE L1 -1194 4952 4845 444 275 39 29 chrX 91409109 91409316 -71190614 - L1M4 LINE L1 -3401 2745 2537 592 253 0 19 chrX 91409317 91409475 -71190455 + MLT1B LTR MaLR 1 155 -235 661 240 0 0 chrX 91409476 91409630 -71190300 + MLT2B1 LTR ERVL 3 156 -364 2613 138 31 13 chrX 91409763 91410218 -71189712 + MER4C LTR ERV1 3 465 0 1985 162 81 11 chrX 91410221 91410704 -71189226 + MER4C-int LTR ERV1 1 562 -6036 2321 142 22 10 chrX 91410735 91411143 -71188787 - MER4A LTR ERV1 0 664 252 692 265 26 22 chrX 91411698 91411928 -71188002 + PABL_B LTR ERV1 437 667 0 1122 120 6 6 chrX 91411932 91412107 -71187823 - MER4A LTR ERV1 -489 175 1 293 139 0 101 chrX 91412151 91412230 -71187700 + MER4C-int LTR ERV1 751 821 -5777 270 196 31 52 chrX 91412261 91412358 -71187572 + MER4C-int LTR ERV1 1255 1349 -5249 3612 40 0 7 chrX 91412358 91412809 -71187121 - LTR7 LTR ERV1 -2 448 1 2291 77 74 0 chrX 91412809 91413172 -71186758 - HERVH LTR ERV1 0 7713 7324 1292 124 23 9 chrX 91413172 91413389 -71186541 - HERVH LTR ERV1 -1894 5819 5600 4045 147 1 1 chrX 91413390 91414052 -71185878 - HERVH LTR ERV1 -2564 5149 4488 3124 110 4 4 chrX 91414053 91414545 -71185385 - HERVH LTR ERV1 -3719 3994 3503 862 140 7 0 chrX 91414547 91414697 -71185233 - HERVH LTR ERV1 -4423 3290 3140 * 15297 89 10 19 chrX 91414676 91417087 -71182843 - HERVH LTR ERV1 -4718 2995 607 20806 78 30 5 chrX 91417202 91420276 -71179654 - L1P LINE L1 -2303 3843 693 676 191 0 0 chrX 91420276 91420402 -71179528 - L1P LINE L1 -5792 354 229 308 361 0 8 chrX 91420991 91421124 -71178806 - MIR SINE MIR -130 132 1 334 258 117 95 chrX 91421168 91421376 -71178554 - MIR3 SINE MIR 0 262 28 2198 117 3 16 chrX 91421382 91421691 -71178239 + AluSg SINE Alu 1 305 -5 591 403 51 11 chrX 91421809 91422419 -71177511 + L2 LINE L2 2039 2672 -642 1165 245 48 54 chrX 91422495 91422887 -71177043 + MLT1B LTR MaLR 1 390 0 2787 224 56 10 chrX 91422887 91423587 -71176343 + MLT1B-int LTR MaLR 1 732 -639 495 163 138 0 chrX 91424051 91424174 -71175756 + Ricksha DNA DNA 1 140 -3106 1524 178 67 0 chrX 91424183 91424481 -71175449 + Ricksha DNA DNA 242 559 -2687 688 183 30 89 chrX 91424492 91424694 -71175236 + MLT2B3 LTR ERVL 358 547 -7 2084 186 28 0 chrX 91424694 91425118 -71174812 + Ricksha DNA DNA 902 1337 -1909 404 247 0 0 chrX 91525118 91525195 -71074735 + L1MA2 LINE L1 1833 1909 -5656 1288 201 34 0 chrX 91525196 91525465 -71074465 + L1MA2 LINE L1 1962 2239 -5326 4521 211 45 23 chrX 91525467 91525791 -71074139 + L1PB3 LINE L1 4076 4391 -1763 184 30 61 0 chrX 91525791 91525824 -71074106 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4521 211 45 23 chrX 91525824 91527490 -71072440 + L1PB3 LINE L1 4391 6121 -33 240 86 0 0 chrX 91527490 91527525 -71072405 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4521 211 45 23 chrX 91527525 91527558 -71072372 + L1PB3 LINE L1 6121 6152 -2 * 5995 162 35 21 chrX 91527539 91529187 -71070743 + L1MA2 LINE L1 2271 3894 -3829 1763 167 45 31 chrX 91529187 91529546 -71070384 - THE1B LTR MaLR 0 364 1 10879 114 15 1 chrX 91529546 91531103 -71068827 - THE1B-int LTR MaLR 0 1580 1 1915 144 56 31 chrX 91531103 91531458 -71068472 - THE1B LTR MaLR 0 364 1 5995 162 35 21 chrX 91531458 91531881 -71068049 + L1MA2 LINE L1 3894 4310 -3413 1923 155 10 7 chrX 91531881 91532190 -71067740 + AluSx SINE Alu 3 312 0 5995 162 35 21 chrX 91532190 91533122 -71066808 + L1MA2 LINE L1 4310 7723 0 1216 217 65 50 chrX 91533121 91533581 -71066349 - L1M4 LINE L1 -1053 5093 4627 * 4124 231 81 13 chrX 91533614 91535478 -71064452 - L1MB2 LINE L1 -4 6236 4222 4387 161 64 57 chrX 91535478 91536542 -71063388 - MER11C LTR ERVK 0 1071 1 4124 231 81 13 chrX 91536542 91536780 -71063150 - L1MB2 LINE L1 -2018 4222 4002 23 54 0 0 chrX 91536996 91537033 -71062897 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chrX 91537231 91537254 -71062676 + AT_rich Low_complexity Low_complexity 1 23 0 1497 276 79 32 chrX 91537784 91538460 -71061470 - L1ME3A LINE L1 -51 6188 5456 3950 70 2 6 chrX 91538460 91538991 -71060939 - L1PA7 LINE L1 -2 6152 5624 1497 276 79 32 chrX 91538991 91539119 -71060811 - L1ME3A LINE L1 -783 5456 5335 254 227 31 0 chrX 91539146 91539243 -71060687 + (TA)n Simple_repeat Simple_repeat 1 100 0 1029 183 147 65 chrX 91539289 91539421 -71060509 - AluJb SINE Alu 0 302 182 279 0 0 0 chrX 91539421 91539452 -71060478 + (TG)n Simple_repeat Simple_repeat 2 32 0 1029 183 147 65 chrX 91539452 91539598 -71060332 - AluJb SINE Alu -120 182 1 1186 304 74 27 chrX 91539606 91540677 -71059253 - L1ME3A LINE L1 -946 5269 4149 25 0 0 0 chrX 91540706 91540731 -71059199 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chrX 91540765 91540804 -71059126 + AT_rich Low_complexity Low_complexity 1 39 0 305 286 36 9 chrX 91540864 91540976 -71058954 - L1MB2 LINE L1 -2376 3839 3725 813 309 60 29 chrX 91541213 91542379 -71057551 - L1MB2 LINE L1 -3145 3070 1914 2071 112 3 9 chrX 91542395 91542716 -71057214 - L1PB1 LINE L1 0 6151 5833 3496 225 2 1 chrX 91542716 91543525 -71056405 + L1 LINE L1 4522 5331 -815 195 42 0 0 chrX 91543741 91543765 -71056165 + (CACCAT)n Simple_repeat Simple_repeat 1 24 0 1647 247 10 0 chrX 91543805 91544189 -71055741 - MLT1B LTR MaLR 0 390 3 1580 194 0 14 chrX 91544209 91544497 -71055433 + AluJo SINE Alu 7 290 -22 335 335 17 0 chrX 91544507 91544680 -71055250 - L1ME3A LINE L1 -4598 1798 1623 * 3154 216 23 45 chrX 91544672 91545099 -71054831 - L1MC1 LINE L1 0 6333 5929 2600 45 0 3 chrX 91545099 91545411 -71054519 + AluY SINE Alu 1 311 0 3154 216 23 45 chrX 91545411 91545756 -71054174 - L1MC1 LINE L1 -404 5929 5578 569 263 8 0 chrX 91545758 91545891 -71054039 + AluJo SINE Alu 1 134 -178 8370 260 42 23 chrX 91545894 91548566 -71051364 - L1MC1 LINE L1 -743 5403 2843 436 129 9 103 chrX 91548566 91548682 -71051248 + L1MA10 LINE L1 6230 6334 0 8370 260 42 23 chrX 91548682 91549356 -71050574 - L1MC1 LINE L1 -3303 2843 2184 2227 219 73 20 chrX 91549357 91549485 -71050445 - L1MA10 LINE L1 -1 6333 6213 371 38 19 0 chrX 91549485 91549538 -71050392 + (TA)n Simple_repeat Simple_repeat 1 54 0 2227 219 73 20 chrX 91549538 91550015 -71049915 - L1MA10 LINE L1 -121 6213 5696 2011 199 42 10 chrX 91550042 91550448 -71049482 + MSTB1 LTR MaLR 1 419 -13 3820 296 65 28 chrX 91550476 91550826 -71049104 - L1M2 LINE L1 -4356 1855 1519 2048 136 0 19 chrX 91550826 91551142 -71048788 - AluSx SINE Alu -2 310 1 3820 296 65 28 chrX 91551142 91552622 -71047308 - L1M2 LINE L1 -4692 1519 6 49 32 0 0 chrX 91552949 91553012 -71046918 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chrX 91553696 91553731 -71046199 + AT_rich Low_complexity Low_complexity 1 35 0 215 253 13 0 chrX 91554553 91554632 -71045298 + (TA)n Simple_repeat Simple_repeat 2 81 0 473 309 52 44 chrX 91555132 91555381 -71044549 + MIR SINE MIR 1 251 -11 2372 298 77 25 chrX 91555477 91557704 -71042226 + L1MB3 LINE L1 1 2084 -4126 1246 179 46 0 chrX 91557704 91557967 -71041963 + L1MA8 LINE L1 6017 6291 0 2372 298 77 25 chrX 91557967 91558491 -71041439 + L1MB3 LINE L1 2084 2579 -3631 8132 115 64 1 chrX 91558491 91559697 -71040233 - HSMAR1 DNA Mariner -5 1282 1 1817 239 27 10 chrX 91559705 91560191 -71039739 + L1MB3 LINE L1 2588 3081 -3129 * 2447 201 38 89 chrX 91560186 91561329 -71038601 + L1MB3 LINE L1 5042 6128 -119 1766 240 109 50 chrX 91561341 91562084 -71037846 + LTR48 LTR ERV1 1 787 0 956 122 77 22 chrX 91562084 91562306 -71037624 + L1MA9 LINE L1 6073 6306 -6 676 308 21 13 chrX 91563461 91563698 -71036232 + LTR16A LTR ERVL 206 444 -6 3977 173 30 12 chrX 91563850 91564649 -71035281 - L1MA9 LINE L1 -38 6456 5644 199 187 22 132 chrX 91564705 91564796 -71035134 - MIR SINE MIR -68 194 114 23 0 0 0 chrX 91565020 91565043 -71034887 + AT_rich Low_complexity Low_complexity 1 23 0 2325 78 19 0 chrX 91565570 91565877 -71034053 - AluSp SINE Alu 0 313 1 1974 200 93 36 chrX 91565908 91566139 -71033791 - MER39 LTR ERV1 0 707 491 2269 169 43 12 chrX 91566139 91566554 -71033376 + MSTA LTR MaLR 1 428 0 1974 200 93 36 chrX 91566554 91566945 -71032985 - MER39 LTR ERV1 -216 491 1 6912 214 22 18 chrX 91567426 91569137 -71030793 + L1P LINE L1 2507 4224 -1922 552 104 0 0 chrX 91569134 91569211 -71030719 - L1P4 LINE L1 -465 5696 5620 * 854 137 7 0 chrX 91569208 91569354 -71030576 - L1PA14 LINE L1 -785 5361 5215 * 5372 128 2 1 chrX 91569348 91570160 -71029770 + L1PA14 LINE L1 5346 6158 -3 32 0 0 0 chrX 91570160 91570192 -71029738 + AT_rich Low_complexity Low_complexity 1 32 0 34 55 0 0 chrX 91570270 91570325 -71029605 + AT_rich Low_complexity Low_complexity 1 55 0 4638 213 25 3 chrX 91570338 91571422 -71028508 - L1MA9 LINE L1 -1254 5074 3967 1912 211 45 5 chrX 91571430 91571832 -71028098 + MSTB1 LTR MaLR 15 432 0 3741 194 77 10 chrX 91571833 91572800 -71027130 - L1MA9 LINE L1 -2345 3983 2953 1461 211 37 120 chrX 91572810 91573275 -71026655 - MSTB1 LTR MaLR -6 426 1 5594 242 85 20 chrX 91573275 91575735 -71024195 - L1MA9 LINE L1 -3375 2953 256 1678 129 3 71 chrX 91575735 91576030 -71023900 + AluSx SINE Alu 1 275 -37 5594 242 85 20 chrX 91576030 91576301 -71023629 - L1MA9 LINE L1 -6072 256 4 2491 232 13 16 chrX 91576303 91576330 -71023600 - L1P5 LINE L1 -660 5491 5465 2517 177 44 15 chrX 91576330 91576690 -71023240 - L1MB1 LINE L1 0 6168 5785 276 91 0 0 chrX 91576690 91576734 -71023196 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2517 177 44 15 chrX 91576734 91576921 -71023009 - L1MB1 LINE L1 -383 5785 5605 2491 232 13 16 chrX 91576921 91577430 -71022500 - L1P5 LINE L1 -686 5465 4946 189 0 0 0 chrX 91577430 91577451 -71022479 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2491 232 13 16 chrX 91577451 91577717 -71022213 - L1P5 LINE L1 -1205 4946 4681 231 314 58 12 chrX 91577766 91577852 -71022078 - L1M3de LINE L1 -5248 1405 1316 332 22 22 0 chrX 91578939 91578984 -71020946 + (CA)n Simple_repeat Simple_repeat 2 47 0 428 298 109 39 chrX 91579031 91579397 -71020533 - MLT1I LTR MaLR -19 390 47 6285 194 26 67 chrX 91581606 91583301 -71016629 + L1 LINE L1 3205 4829 -1317 2211 112 3 16 chrX 91583322 91583636 -71016294 - AluSx SINE Alu -2 310 1 422 223 80 0 chrX 91583636 91583748 -71016182 + Ricksha DNA DNA 6 126 -1920 * 823 113 0 35 chrX 91583745 91583886 -71016044 + Ricksha DNA DNA 233 368 -2878 * 16549 195 51 22 chrX 91583880 91586827 -71013103 + L1MA7 LINE L1 1 2863 -4702 1898 124 16 42 chrX 91586827 91587134 -71012796 + AluSx SINE Alu 11 309 -3 16549 195 51 22 chrX 91587134 91588098 -71011832 + L1MA7 LINE L1 2863 3798 -3767 339 25 0 0 chrX 91588098 91588138 -71011792 + (CAA)n Simple_repeat Simple_repeat 3 42 0 16549 195 51 22 chrX 91588138 91590142 -71009788 + L1MA7 LINE L1 3798 6086 -1479 2280 96 3 16 chrX 91590143 91590455 -71009475 + AluSg SINE Alu 1 308 -2 1635 91 8 4 chrX 91590456 91590708 -71009222 + L1MA1 LINE L1 6050 6302 0 1890 179 35 41 chrX 91590732 91591101 -71008829 + Ricksha DNA DNA 357 723 -2523 3042 171 21 14 chrX 91591101 91591315 -71008615 + Ricksha DNA DNA 2675 2886 -368 1971 215 50 59 chrX 91591315 91591874 -71008056 + MLT2B3 LTR ERVL 1 554 0 3042 171 21 14 chrX 91591874 91592228 -71007702 + Ricksha DNA DNA 2886 3247 -7 4830 177 49 9 chrX 91592231 91593642 -71006288 + L1MA7 LINE L1 6240 7709 -1 24 32 0 0 chrX 91593647 91593678 -71006252 + AT_rich Low_complexity Low_complexity 1 31 0 1280 229 85 74 chrX 91593880 91594243 -71005687 - MER70-int LTR ERVL -2849 2174 1808 * 2510 258 19 36 chrX 91594241 91594989 -71004941 - MER70-int LTR ERVL -3832 1191 457 193 400 50 0 chrX 91597211 91597331 -71002599 - MIR3 SINE MIR 0 208 83 22 0 0 0 chrX 91597436 91597458 -71002472 + AT_rich Low_complexity Low_complexity 1 22 0 346 333 51 8 chrX 91597706 91597823 -71002107 + L2 LINE L2 3146 3267 -5 258 340 0 0 chrX 91598259 91598362 -71001568 - MLT1I LTR MaLR 0 409 307 294 275 92 109 chrX 91598519 91598748 -71001182 - MLT1I LTR MaLR -184 225 1 255 371 62 51 chrX 91598780 91598958 -71000972 - MIR3 SINE MIR -19 189 10 415 273 236 6 chrX 91601577 91601742 -70998188 - MIR SINE MIR -7 255 53 769 61 0 0 chrX 91601934 91602033 -70997897 + L1MA1 LINE L1 6204 6302 0 315 324 46 56 chrX 91602266 91602482 -70997448 - MIR SINE MIR -46 216 3 514 315 65 60 chrX 91602897 91603352 -70996578 + L1ME LINE L1 5254 5720 -450 378 298 91 44 chrX 91603434 91603817 -70996113 + L1MCc LINE L1 25 425 -5998 2109 244 57 48 chrX 91603963 91605010 -70994920 + L1M4 LINE L1 2356 3412 -2734 592 301 5 12 chrX 91605015 91605226 -70994704 + MLT1D LTR MaLR 1 178 -327 1639 243 119 11 chrX 91605238 91605690 -70994240 + MLT1D LTR MaLR 5 505 0 902 223 82 53 chrX 91605690 91605796 -70994134 + MLT1D LTR MaLR 214 316 -189 243 79 0 0 chrX 91605796 91605834 -70994096 + (CAA)n Simple_repeat Simple_repeat 1 38 0 902 223 82 53 chrX 91605834 91606009 -70993921 + MLT1D LTR MaLR 316 503 -2 1718 265 87 22 chrX 91606014 91607344 -70992586 + L1M4 LINE L1 3416 4867 -1279 417 251 38 6 chrX 91607461 91607644 -70992286 + L1 LINE L1 3074 3262 -2884 12676 205 26 16 chrX 91607656 91610596 -70989334 + L1M1 LINE L1 17 5814 -1751 1738 71 17 0 chrX 91610598 91610836 -70989094 + L1PA8 LINE L1 5925 6166 -6 26 30 0 0 chrX 91610836 91610869 -70989061 + AT_rich Low_complexity Low_complexity 1 33 0 214 270 0 0 chrX 91611201 91611264 -70988666 + A-rich Low_complexity Low_complexity 1 63 0 1183 126 37 0 chrX 91611264 91611455 -70988475 + L1PBa LINE L1 3 200 -6663 9859 137 51 8 chrX 91611457 91613806 -70986124 + L1PBa LINE L1 636 3241 -3621 2508 208 69 18 chrX 91613806 91614416 -70985514 - LTR9B LTR ERV1 0 644 4 1247 175 6 15 chrX 91614429 91614688 -70985242 - HUERS-P3 LTR ERV1 -26 8893 7163 582 166 28 14 chrX 91614978 91615123 -70984807 - HUERS-P3 LTR ERV1 -3693 4123 3977 448 248 0 16 chrX 91615133 91615258 -70984672 - HUERS-P3 LTR ERV1 -1937 6982 6860 * 3801 191 22 7 chrX 91615256 91615943 -70983987 - HUERS-P3 LTR ERV1 -2009 6910 6214 2646 144 39 5 chrX 91615927 91616336 -70983594 - HUERS-P3 LTR ERV1 -3596 5323 4901 * 891 166 22 0 chrX 91616335 91616474 -70983456 - HUERS-P3 LTR ERV1 -4239 4680 4539 * 7956 178 21 10 chrX 91616467 91618636 -70981294 - HUERS-P3 LTR ERV1 -5314 2104 742 1470 189 44 24 chrX 91618648 91618944 -70980986 - HUERS-P3 LTR ERV1 -6844 574 273 294 200 129 0 chrX 91618971 91619041 -70980889 - HUERS-P3 LTR ERV1 -8840 79 1 2241 217 79 43 chrX 91619041 91619557 -70980373 - LTR9B LTR ERV1 0 644 148 2141 123 13 0 chrX 91619557 91619866 -70980064 + AluSq SINE Alu 1 313 0 354 45 0 0 chrX 91619868 91619912 -70980018 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 2241 217 79 43 chrX 91619912 91620014 -70979916 - LTR9B LTR ERV1 -496 148 1 10822 229 34 3 chrX 91620015 91622299 -70977631 + L1PB1 LINE L1 2523 4912 -1234 180 0 0 0 chrX 91622299 91622319 -70977611 + (CAA)n Simple_repeat Simple_repeat 2 21 0 10822 229 34 3 chrX 91622319 91622827 -70977103 + L1PB1 LINE L1 4912 5403 -743 1758 108 16 42 chrX 91622835 91623142 -70976788 - MER4A-int LTR ERV1 -4496 2102 1804 1412 94 56 82 chrX 91623140 91623521 -70976409 - MER4A-int LTR ERV1 -4210 1268 503 * 2747 102 128 85 chrX 91623507 91624083 -70975847 - MER4A-int LTR ERV1 -5997 601 1 1572 148 37 50 chrX 91624086 91624383 -70975547 - MER4A LTR ERV1 0 664 372 1758 120 0 41 chrX 91624512 91624803 -70975127 + L1PB1 LINE L1 5504 5782 -369 1605 147 24 0 chrX 91624803 91625055 -70974875 - THE1C LTR MaLR -111 264 7 8817 133 46 52 chrX 91625061 91626651 -70973279 - THE1C-int LTR MaLR 0 1580 1 2368 121 34 0 chrX 91626659 91627014 -70972916 - THE1C LTR MaLR -8 367 1 2065 105 6 6 chrX 91627014 91627329 -70972601 + L1PB1 LINE L1 5794 6108 -43 447 186 0 0 chrX 91627329 91627431 -70972499 + (TA)n Simple_repeat Simple_repeat 2 103 0 11648 196 22 42 chrX 91627436 91630731 -70969199 + L1M1 LINE L1 2754 6112 -1453 526 196 0 0 chrX 91630731 91630823 -70969107 + AluJ/FLAM SINE Alu 10 101 -211 11648 196 22 42 chrX 91630823 91631354 -70968576 + L1M1 LINE L1 6112 6591 -974 1365 167 23 16 chrX 91631354 91631659 -70968271 + L1MA2 LINE L1 5998 6304 0 11648 196 22 42 chrX 91631659 91631683 -70968247 + L1M1 LINE L1 6591 6614 -951 4400 240 56 19 chrX 91631666 91632261 -70967669 + L1 LINE L1 3841 4412 -1742 * 186 43 0 0 chrX 91632261 91632284 -70967646 + (CA)n Simple_repeat Simple_repeat 2 24 0 4400 240 56 19 chrX 91632284 91632355 -70967575 + L1 LINE L1 4412 4479 -1675 3503 58 0 7 chrX 91632355 91632806 -70967124 + LTR7 LTR ERV1 1 448 -2 4400 240 56 19 chrX 91632806 91633621 -70966309 + L1 LINE L1 4479 5381 -773 1372 312 97 28 chrX 91633621 91634301 -70965629 + L1M3a LINE L1 2 728 -5227 1066 377 70 18 chrX 91634335 91635227 -70964703 + L1M3a LINE L1 304 1107 -4848 2402 157 4 82 chrX 91635312 91635809 -70964121 + THE1-int LTR MaLR 174 631 -949 1927 157 58 3 chrX 91635815 91636222 -70963708 + THE1C-int LTR MaLR 1167 1580 0 686 196 55 40 chrX 91636195 91636222 -70963708 + L1MA1 LINE L1 6009 6034 -268 * 1701 180 55 17 chrX 91636222 91636583 -70963347 + THE1C LTR MaLR 1 375 0 686 196 55 40 chrX 91636583 91636754 -70963176 + L1MA1 LINE L1 6034 6210 -92 2062 250 31 0 chrX 91636754 91636911 -70963019 + L1PA16 LINE L1 5609 5760 -406 222 37 0 0 chrX 91636911 91636938 -70962992 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 270 0 0 0 chrX 91636937 91636967 -70962963 + (CA)n Simple_repeat Simple_repeat 2 31 0 2062 250 31 0 chrX 91636938 91637325 -70962605 + L1PA16 LINE L1 5760 6140 -26 180 0 0 0 chrX 91637325 91637345 -70962585 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1110 272 45 26 chrX 91637359 91637406 -70962524 + L1MB3 LINE L1 4798 4843 -1303 1454 161 43 66 chrX 91637406 91637753 -70962177 - MER44D DNA MER2_type 0 609 1 1110 272 45 26 chrX 91637753 91638132 -70961798 + L1MB3 LINE L1 4843 5232 -914 1054 194 118 4 chrX 91638165 91638428 -70961502 + L1MA9 LINE L1 5776 6068 -244 369 235 40 7 chrX 91638438 91638581 -70961349 + L1MA9 LINE L1 6183 6333 -1 3460 210 22 28 chrX 91638582 91639406 -70960524 + L1MB3 LINE L1 5365 6183 0 3169 278 62 45 chrX 91639499 91641102 -70958828 + L1MD3 LINE L1 5648 7278 -717 516 204 106 0 chrX 91641102 91641215 -70958715 + MLT1F1 LTR MaLR 1 125 -442 983 229 49 4 chrX 91641221 91641465 -70958465 + L1MD3 LINE L1 7411 7665 -330 4671 142 12 27 chrX 91641481 91642283 -70957647 - LTR25 LTR ERV1 0 794 5 1116 250 31 9 chrX 91642291 91642615 -70957315 + L1MD3 LINE L1 7645 7975 -20 440 273 14 14 chrX 91642825 91642964 -70956966 + L1MC4a LINE L1 5548 5686 -476 2881 146 63 2 chrX 91642964 91643440 -70956490 - LTR1 LTR ERV1 0 785 280 1044 118 12 6 chrX 91643440 91643610 -70956320 - MER9 LTR ERVK 0 511 341 7316 67 0 0 chrX 91643611 91644527 -70955403 - HERVK9 LTR ERVK -1373 4543 3628 3666 96 0 2 chrX 91644527 91645029 -70954901 - HERVK9 LTR ERVK -3019 2897 2397 7537 68 139 3 chrX 91645029 91646104 -70953826 + MER11B LTR ERVK 1 1222 -14 15479 102 25 25 chrX 91646143 91647718 -70952212 - HERVK9 LTR ERVK -3514 2402 757 196 246 0 87 chrX 91647718 91647787 -70952143 - MER5B DNA MER1_type -61 117 55 15479 102 25 25 chrX 91647787 91648545 -70951385 - HERVK9 LTR ERVK -5158 758 1 3269 120 14 6 chrX 91648545 91649052 -70950878 - MER9 LTR ERVK 0 511 1 1179 179 16 16 chrX 91649149 91649400 -70950530 - LTR1 LTR ERV1 -534 251 1 308 277 52 71 chrX 91649510 91649854 -70950076 + L1MC4a LINE L1 5754 5947 -223 25 0 0 0 chrX 91650264 91650289 -70949641 + AT_rich Low_complexity Low_complexity 1 25 0 444 145 0 0 chrX 91650404 91650473 -70949457 + FRAM SINE Alu 30 98 -78 1053 233 12 17 chrX 91650764 91651004 -70948926 - MER8 DNA MER2_type 0 239 1 956 48 16 0 chrX 91651395 91651521 -70948409 + L1PA4 LINE L1 6027 6154 -1 249 33 0 0 chrX 91652194 91652224 -70947706 + (TA)n Simple_repeat Simple_repeat 1 30 0 336 384 25 20 chrX 91652421 91652619 -70947311 + MIR3 SINE MIR 5 203 -5 23 0 0 0 chrX 91652867 91652890 -70947040 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 91652911 91652939 -70946991 + AT_rich Low_complexity Low_complexity 1 28 0 192 412 15 30 chrX 91653058 91653189 -70946741 - L2 LINE L2 -248 3024 2896 20444 208 23 26 chrX 91653199 91655955 -70943975 - L1PA11 LINE L1 -2 7610 4847 1980 140 10 0 chrX 91655955 91656248 -70943682 - AluSx SINE Alu -6 306 11 20444 208 23 26 chrX 91656248 91660538 -70939392 - L1PA11 LINE L1 -2765 4847 39 22 0 0 0 chrX 91661779 91661801 -70938129 + AT_rich Low_complexity Low_complexity 1 22 0 5788 170 22 3 chrX 91661814 91663659 -70936271 + L1MA2 LINE L1 4355 6235 -69 230 175 0 0 chrX 91664313 91664353 -70935577 + Tigger6b DNA MER2_type 789 828 -769 203 303 15 0 chrX 91665460 91665526 -70934404 + GA-rich Low_complexity Low_complexity 3 69 0 922 225 41 4 chrX 91666118 91666362 -70933568 - L1 LINE L1 -1828 4318 4066 1151 140 57 0 chrX 91666366 91666559 -70933371 + MLT2A2 LTR ERVL 1 204 -249 5904 164 19 15 chrX 91666559 91668181 -70931749 + L1MA3 LINE L1 4676 6302 -3 3659 215 32 39 chrX 91668201 91670022 -70929908 + L1MB1 LINE L1 4369 6167 -1 330 324 24 17 chrX 91670139 91670279 -70929651 + MIR SINE MIR 2 143 -77 8915 94 9 149 chrX 91670342 91672210 -70927720 + L1P LINE L1 3743 5348 -798 595 260 88 15 chrX 91673748 91673952 -70925978 + L1ME2 LINE L1 5935 6153 -11 537 104 0 0 chrX 91674160 91674237 -70925693 - MADE1 DNA Mariner 0 80 4 23 0 0 0 chrX 91675159 91675182 -70924748 + AT_rich Low_complexity Low_complexity 1 23 0 2478 264 50 32 chrX 91675312 91676418 -70923512 + L1MC4a LINE L1 5266 6391 -1417 1916 254 38 56 chrX 91676437 91677152 -70922778 - L1MB8 LINE L1 -1 6763 6062 1439 236 29 46 chrX 91677171 91677491 -70922439 - L1MD1 LINE L1 0 6242 5931 2394 85 0 0 chrX 91677491 91677798 -70922132 + AluSc SINE Alu 1 307 -2 1439 236 29 46 chrX 91677798 91677930 -70922000 - L1MD1 LINE L1 -311 5931 5798 248 151 0 38 chrX 91677941 91677994 -70921936 - MLT2D LTR ERVL -6 514 464 273 98 0 0 chrX 91678039 91678080 -70921850 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 270 51 0 26 chrX 91678080 91678119 -70921811 + L1MC/D LINE L1 5851 5888 -354 3263 174 40 11 chrX 91678131 91678757 -70921173 - LTR48B LTR ERV1 0 644 1 35 41 0 0 chrX 91678757 91678806 -70921124 + AT_rich Low_complexity Low_complexity 1 49 0 241 139 76 32 chrX 91678980 91679138 -70920792 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 22 56 0 0 chrX 91679160 91679196 -70920734 + AT_rich Low_complexity Low_complexity 1 36 0 1572 223 16 16 chrX 91679277 91679641 -70920289 - MLT2D LTR ERVL -48 366 3 6809 195 27 6 chrX 91679641 91680729 -70919201 - ERVL-D LTR ERVL -6 5758 4637 2177 209 86 29 chrX 91680729 91681215 -70918715 + MLT2B3 LTR ERVL 3 522 -32 561 54 11 33 chrX 91681215 91681307 -70918623 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 2177 209 86 29 chrX 91681307 91681342 -70918588 + MLT2B3 LTR ERVL 522 554 0 6809 195 27 6 chrX 91681342 91681553 -70918377 - ERVL-D LTR ERVL -1127 4637 4432 5058 221 28 3 chrX 91681555 91682748 -70917182 - L1MB8 LINE L1 -961 5771 4550 1958 182 8 0 chrX 91682797 91683159 -70916771 + MER47A DNA MER2_type 2 366 0 1724 258 23 12 chrX 91683191 91683730 -70916200 - L1MB8 LINE L1 -4176 2557 2025 227 333 67 0 chrX 91883731 91883791 -70716139 - L2 LINE L2 -35 3237 3174 295 283 9 26 chrX 91884715 91884828 -70715102 - L1ME LINE L1 -543 5578 5468 22 0 0 0 chrX 91887980 91888002 -70711928 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chrX 91888078 91888103 -70711827 + (T)n Simple_repeat Simple_repeat 1 25 0 280 311 46 57 chrX 91888164 91888345 -70711585 + MIR SINE MIR 38 212 -50 275 353 71 24 chrX 91889403 91889573 -70710357 - L2 LINE L2 -182 3090 2913 808 199 37 12 chrX 91889820 91889981 -70709949 + FRAM SINE Alu 4 168 -8 2345 89 3 10 chrX 91890043 91890356 -70709574 + AluSp SINE Alu 1 311 -2 1924 163 0 3 chrX 91891787 91892100 -70707830 - AluJo SINE Alu 0 312 1 181 211 0 105 chrX 91892456 91892513 -70707417 + L2 LINE L2 3214 3264 -8 2253 107 0 0 chrX 91893160 91893459 -70706471 + AluSg SINE Alu 1 299 -11 300 82 20 20 chrX 91893581 91893630 -70706300 - Alu SINE Alu -5 297 249 28 0 0 0 chrX 91895726 91895754 -70704176 + AT_rich Low_complexity Low_complexity 1 28 0 432 0 0 0 chrX 91896542 91896590 -70703340 + (ATG)n Simple_repeat Simple_repeat 2 49 0 2158 96 7 0 chrX 91896590 91896872 -70703058 - AluSq SINE Alu -29 284 1 1404 205 0 25 chrX 91897181 91897498 -70702432 - AluJo SINE Alu -3 309 1 2133 89 7 3 chrX 91900710 91901044 -70698886 - AluSq SINE Alu 0 335 1 249 196 0 0 chrX 91901132 91901188 -70698742 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 2120 105 3 14 chrX 91901358 91901652 -70698278 + AluSx SINE Alu 1 291 -21 187 255 170 11 chrX 91901799 91901893 -70698037 - L2 LINE L2 -1 3312 3204 1716 178 3 3 chrX 91902282 91902569 -70697361 - AluJo SINE Alu -25 287 1 210 341 93 59 chrX 91903747 91904122 -70695808 - L2 LINE L2 -694 2620 2233 334 239 19 19 chrX 91904127 91904286 -70695644 + (TATAA)n Simple_repeat Simple_repeat 5 163 0 193 304 81 37 chrX 91904287 91904448 -70695482 - L2 LINE L2 -1087 2227 2060 1875 128 31 3 chrX 91904926 91905215 -70694715 - AluSq SINE Alu -16 297 1 331 285 131 30 chrX 91905222 91905395 -70694535 - MIR SINE MIR -67 141 4 203 298 70 70 chrX 91906328 91906499 -70693431 + L2 LINE L2 679 849 -2465 2105 112 28 0 chrX 91906608 91906895 -70693035 - AluSx SINE Alu -17 295 1 257 212 26 88 chrX 91907380 91907493 -70692437 + L2 LINE L2 3134 3239 -74 642 247 110 0 chrX 91907639 91907821 -70692109 + MIR SINE MIR 2 203 -59 24 0 0 0 chrX 91908137 91908161 -70691769 + AT_rich Low_complexity Low_complexity 1 24 0 2418 76 0 22 chrX 91908415 91908729 -70691201 + AluSp SINE Alu 6 312 -1 186 358 74 0 chrX 91908738 91908833 -70691097 + MIR3 SINE MIR 78 179 -29 1914 185 3 6 chrX 91908860 91909201 -70690729 - MER58B DNA MER1_type 0 341 2 2202 114 7 0 chrX 91909692 91910000 -70689930 + AluSg SINE Alu 1 310 0 355 260 160 0 chrX 91910015 91910115 -70689815 + L2 LINE L2 2730 2845 -469 2654 38 0 13 chrX 91910897 91911211 -70688719 - AluY SINE Alu 0 311 2 2381 67 0 16 chrX 91911933 91912249 -70687681 - AluY SINE Alu 0 311 1 354 45 0 0 chrX 91914203 91914247 -70685683 + (TC)n Simple_repeat Simple_repeat 1 44 0 23 33 0 0 chrX 91914319 91914349 -70685581 + AT_rich Low_complexity Low_complexity 1 30 0 2472 68 0 0 chrX 91914693 91914989 -70684941 + AluY SINE Alu 1 296 -15 572 309 56 6 chrX 91915251 91915454 -70684476 - MIR SINE MIR -49 213 2 554 198 45 0 chrX 91915597 91915708 -70684222 + MIR SINE MIR 147 262 0 2321 80 0 7 chrX 91915730 91916030 -70683900 - AluSc SINE Alu -11 298 1 305 287 128 52 chrX 91916051 91916204 -70683726 + L3 LINE CR1 1174 1355 -222 2465 73 0 0 chrX 91916204 91916506 -70683424 - AluSc SINE Alu -7 302 1 305 287 128 52 chrX 91916506 91916603 -70683327 + L3 LINE CR1 1355 1443 -134 2275 104 0 7 chrX 91916799 91917098 -70682832 - AluSx SINE Alu -15 297 1 767 217 22 54 chrX 91917140 91917208 -70682722 - MER45A DNA AcHobo -1403 178 109 2438 84 0 0 chrX 91917208 91917518 -70682412 - AluY SINE Alu -1 310 1 767 217 22 54 chrX 91917518 91917633 -70682297 - MER45A DNA AcHobo -1472 109 1 267 342 75 0 chrX 91918333 91918453 -70681477 - L2 LINE L2 -4 3309 3181 692 234 67 54 chrX 91918877 91919212 -70680718 - MER39 LTR ERV1 -5 684 174 2334 85 0 7 chrX 91919241 91919535 -70680395 + AluSc SINE Alu 1 292 -17 1134 177 5 25 chrX 91919692 91919895 -70680035 - AluJo SINE Alu -103 209 11 372 318 0 0 chrX 91919934 91920041 -70679889 - MER34 LTR ERV1 -431 111 5 2308 87 0 35 chrX 91920096 91920406 -70679524 - AluSq SINE Alu -14 299 1 204 274 0 0 chrX 91922489 91922540 -70677390 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 2483 62 13 0 chrX 91924011 91924316 -70675614 + AluSp SINE Alu 1 309 -4 229 354 53 0 chrX 91924665 91924778 -70675152 - L2 LINE L2 -2 3311 3193 382 219 146 0 chrX 91924812 91924894 -70675036 + L2 LINE L2 3171 3264 -8 232 258 48 0 chrX 91924890 91924952 -70674978 - MIR3 SINE MIR -8 200 136 * 221 56 0 28 chrX 91925119 91925155 -70674775 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1230 193 167 31 chrX 91925316 91925628 -70674302 - MER39 LTR ERV1 -26 681 413 2167 84 35 0 chrX 91925628 91925915 -70674015 - AluSx SINE Alu -15 297 1 1230 193 167 31 chrX 91925915 91926164 -70673766 - MER39 LTR ERV1 -294 413 1 201 39 0 0 chrX 91926904 91926930 -70673000 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2069 107 4 14 chrX 91927199 91927480 -70672450 + AluSx SINE Alu 1 278 -34 237 33 0 0 chrX 91927480 91927510 -70672420 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 2249 105 0 13 chrX 91927658 91927972 -70671958 + AluSg SINE Alu 1 310 0 2002 191 45 24 chrX 91928000 91928402 -70671528 - MER31B LTR ERV1 -4 657 48 2424 95 0 0 chrX 91928402 91928707 -70671223 + AluSq SINE Alu 1 305 -8 2002 191 45 24 chrX 91928707 91928757 -70671173 - MER31B LTR ERV1 -613 48 1 355 330 11 78 chrX 91928842 91928877 -70671053 - MIR SINE MIR -83 179 143 1748 107 91 23 chrX 91928877 91929196 -70670734 - AluSg SINE Alu 0 337 1 355 330 11 78 chrX 91929196 91929350 -70670580 - MIR SINE MIR -119 143 2 23 0 0 0 chrX 91929782 91929805 -70670125 + AT_rich Low_complexity Low_complexity 1 23 0 2114 127 0 0 chrX 91930834 91931153 -70668777 - AluSg SINE Alu 0 310 1 207 0 0 0 chrX 91932148 91932171 -70667759 + (A)n Simple_repeat Simple_repeat 1 23 0 2313 80 3 0 chrX 91932482 91932771 -70667159 + AluSx SINE Alu 1 290 -22 2584 43 0 7 chrX 91932778 91933082 -70666848 + AluY SINE Alu 1 302 -9 1357 92 0 223 chrX 91933208 91933535 -70666395 + AluSx SINE Alu 47 300 -12 2124 113 3 3 chrX 91934020 91934320 -70665610 - AluSx SINE Alu -12 300 1 640 362 33 33 chrX 91934357 91934661 -70665269 - L2 LINE L2 0 3272 2969 192 152 0 0 chrX 91935385 91935418 -70664512 + (TG)n Simple_repeat Simple_repeat 1 33 0 929 152 0 0 chrX 91935765 91935897 -70664033 - FLAM_C SINE Alu -1 132 1 193 296 0 0 chrX 91935987 91936031 -70663899 + MIR3 SINE MIR 144 187 -21 828 279 46 100 chrX 91936183 91936682 -70663248 - L2 LINE L2 0 3313 2842 1264 252 40 40 chrX 91936760 91937181 -70662749 - L2 LINE L2 -904 2410 1990 215 268 0 0 chrX 91937652 91937693 -70662237 - L2 LINE L2 -22 3250 3210 2302 84 0 0 chrX 91937747 91938077 -70661853 - AluSx SINE Alu 0 330 1 1282 166 0 5 chrX 91938091 91938329 -70661601 - AluJb SINE Alu 0 321 85 210 37 0 0 chrX 91938617 91938644 -70661286 + (CA)n Simple_repeat Simple_repeat 2 28 0 2257 103 7 0 chrX 91938894 91939195 -70660735 + AluSg1 SINE Alu 1 303 -6 767 324 96 22 chrX 91939523 91939992 -70659938 - L2 LINE L2 -35 3278 2776 251 311 95 0 chrX 91940367 91940441 -70659489 - L2 LINE L2 -38 3234 3154 201 250 139 28 chrX 91942783 91942855 -70657075 + MIR SINE MIR 61 140 -68 2417 90 0 0 chrX 91943035 91943345 -70656585 - AluSg SINE Alu 0 310 1 241 278 74 19 chrX 91943346 91943454 -70656476 - L2 LINE L2 -43 3229 3116 232 263 26 0 chrX 91943647 91943723 -70656207 - MIR SINE MIR -5 257 180 2359 92 0 31 chrX 91943936 91944116 -70655814 - AluSp SINE Alu -6 307 123 180 0 0 0 chrX 91944116 91944136 -70655794 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2144 109 7 0 chrX 91944136 91944419 -70655511 - AluSp SINE Alu -28 285 1 2359 92 0 31 chrX 91944419 91944554 -70655376 - AluSp SINE Alu -188 125 1 686 209 51 6 chrX 91944555 91944713 -70655217 - MIR SINE MIR -96 166 2 796 269 115 19 chrX 91944761 91945021 -70654909 - L3 LINE CR1 -61 1516 1232 278 304 94 43 chrX 91945324 91945462 -70654468 + L2 LINE L2 3126 3270 -2 348 200 0 0 chrX 91946004 91946079 -70653851 + (CA)n Simple_repeat Simple_repeat 1 75 0 2399 78 7 0 chrX 91946192 91946487 -70653443 - AluSq SINE Alu -16 297 1 2323 106 3 0 chrX 91947064 91947376 -70652554 + AluSp SINE Alu 1 313 0 432 0 0 0 chrX 91948197 91948245 -70651685 + (TG)n Simple_repeat Simple_repeat 2 49 0 2425 83 0 0 chrX 91948418 91948719 -70651211 + AluSg SINE Alu 1 301 -9 953 52 0 0 chrX 91948835 91948951 -70650979 - SVA Other Other -3 1383 1268 2616 76 3 0 chrX 91948951 91949280 -70650650 - LTR5 LTR ERVK -639 330 1 6236 140 19 21 chrX 91949280 91950571 -70649359 - SVA Other Other -518 936 14 30 27 0 0 chrX 91950576 91950613 -70649317 + AT_rich Low_complexity Low_complexity 1 37 0 358 294 0 0 chrX 91950861 91950953 -70648977 - MER117 DNA MER1_type -98 99 8 2205 112 0 10 chrX 91951317 91951631 -70648299 + AluSx SINE Alu 1 311 -1 209 264 70 85 chrX 91951685 91951814 -70648116 - L2 LINE L2 -188 3084 2958 2109 87 0 0 chrX 91952136 91952402 -70647528 - AluSc SINE Alu -39 270 5 2938 142 66 4 chrX 91952429 91952956 -70646974 - L1MC2 LINE L1 -1 6343 5784 403 331 16 0 chrX 91953184 91953305 -70646625 + MIR3 SINE MIR 76 198 -10 304 373 8 0 chrX 91953299 91953425 -70646505 - MIR3 SINE MIR -44 164 38 * 1863 104 22 22 chrX 91953559 91953829 -70646101 - AluSx SINE Alu -5 307 38 2099 71 25 14 chrX 91954455 91954762 -70645168 + AluY SINE Alu 1 310 0 2453 68 0 0 chrX 91955724 91956019 -70643911 + AluY SINE Alu 1 295 -16 2066 84 0 57 chrX 91956545 91956870 -70643060 - AluSg SINE Alu 0 308 1 196 304 0 24 chrX 91957330 91957406 -70642524 - MIR SINE MIR -83 125 53 204 125 0 0 chrX 91957545 91957577 -70642353 + (ATG)n Simple_repeat Simple_repeat 1 32 0 258 264 14 14 chrX 91957612 91957684 -70642246 - MIR SINE MIR -135 127 56 2425 88 3 0 chrX 91957923 91958230 -70641700 + AluSp SINE Alu 2 309 -4 2349 103 3 0 chrX 91958590 91958892 -70641038 + AluSp SINE Alu 1 303 -10 290 316 154 0 chrX 91959070 91959187 -70640743 + L2 LINE L2 3137 3271 -1 1146 53 0 0 chrX 91959519 91959650 -70640280 + AluSg SINE Alu 1 131 -179 2314 99 0 3 chrX 91959864 91960158 -70639772 - AluSx SINE Alu -19 293 1 2292 85 0 33 chrX 91960303 91960610 -70639320 - AluSg SINE Alu -13 297 1 1223 165 19 0 chrX 91961374 91961580 -70638350 + AluSg/x SINE Alu 85 294 -16 183 129 0 0 chrX 91961985 91962016 -70637914 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 1666 97 18 0 chrX 91962016 91962242 -70637688 + AluSg/x SINE Alu 81 310 -2 186 392 39 35 chrX 91962430 91962685 -70637245 - L2 LINE L2 -2063 1251 996 2326 98 3 0 chrX 91962723 91963019 -70636911 + AluSg SINE Alu 1 297 -13 493 211 38 53 chrX 91963776 91963909 -70636021 - MER5B DNA MER1_type 0 178 48 1832 145 47 3 chrX 91963977 91964273 -70635657 - AluSx SINE Alu -3 309 1 207 0 0 0 chrX 91964336 91964359 -70635571 + (TA)n Simple_repeat Simple_repeat 2 24 0 851 198 10 83 chrX 91964709 91964901 -70635029 - MER45A DNA AcHobo 0 178 1 1746 114 29 58 chrX 91965059 91965367 -70634563 + AluSx SINE Alu 1 299 -13 2119 93 3 42 chrX 91965367 91965678 -70634252 + AluSq SINE Alu 1 300 -13 2124 98 3 17 chrX 91965801 91966098 -70633832 - AluSx SINE Alu -18 294 2 403 273 98 43 chrX 91966101 91966309 -70633621 - MIR SINE MIR -49 213 1 489 51 0 0 chrX 91966334 91966393 -70633537 - AluJo SINE Alu -12 298 240 984 152 0 30 chrX 91966393 91966557 -70633373 - AluJo SINE Alu -115 197 39 1424 65 0 0 chrX 91966810 91966980 -70632950 - AluSc SINE Alu -13 296 127 2396 87 0 6 chrX 91967501 91967812 -70632118 - AluSc SINE Alu 0 309 1 359 319 0 0 chrX 91968572 91968666 -70631264 - MIR3 SINE MIR -19 189 96 725 294 6 4 chrX 91969776 91969971 -70629959 - MIR SINE MIR -62 146 2 2177 134 0 0 chrX 91969988 91970293 -70629637 - AluSq SINE Alu -8 305 1 268 365 109 0 chrX 91970299 91970436 -70629494 + L2 LINE L2 2521 2672 -642 21 36 0 0 chrX 91970668 91970696 -70629234 + AT_rich Low_complexity Low_complexity 1 28 0 2486 70 3 0 chrX 91971038 91971338 -70628592 - AluSp SINE Alu -12 301 1 315 0 0 0 chrX 91971338 91971373 -70628557 + (T)n Simple_repeat Simple_repeat 1 35 0 289 246 0 31 chrX 91971386 91971451 -70628479 - tRNA-Ile-ATT tRNA tRNA -3 74 12 188 320 124 0 chrX 91972111 91972208 -70627722 + MIR SINE MIR 86 194 -68 2325 81 0 13 chrX 91972872 91973179 -70626751 - AluY SINE Alu -8 303 1 258 236 47 78 chrX 91973786 91973904 -70626026 - MIR SINE MIR -61 147 20 26 50 0 0 chrX 91974856 91974896 -70625034 + AT_rich Low_complexity Low_complexity 1 40 0 2772 32 0 0 chrX 91974912 91975223 -70624707 + AluY SINE Alu 1 311 0 862 176 106 6 chrX 91975268 91975438 -70624492 + AluSg/x SINE Alu 120 306 -4 2495 83 0 0 chrX 91976194 91976495 -70623435 + AluSc SINE Alu 1 301 -8 2162 117 0 7 chrX 91976508 91976806 -70623124 + AluSq SINE Alu 1 296 -17 189 0 0 0 chrX 91976810 91976831 -70623099 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2120 105 3 14 chrX 91976960 91977255 -70622675 + AluSx SINE Alu 1 292 -20 193 49 0 73 chrX 91977380 91977421 -70622509 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 616 235 39 0 chrX 91977929 91978082 -70621848 + MER103 DNA DNA 4 162 -4 2144 119 0 0 chrX 91979472 91979758 -70620172 + AluSq SINE Alu 1 286 -27 1003 125 0 0 chrX 91979622 91979758 -70620172 + AluSq SINE Alu 151 311 0 186 0 40 0 chrX 91979758 91979783 -70620147 + (CAAA)n Simple_repeat Simple_repeat 2 128 0 2370 98 0 13 chrX 91979799 91980115 -70619815 + AluSx SINE Alu 1 312 0 2509 87 3 0 chrX 91981888 91982200 -70617730 + AluSp SINE Alu 1 313 0 1342 103 13 67 chrX 91982761 91982876 -70617054 + AluSx SINE Alu 1 100 -212 1840 58 0 5 chrX 91982876 91983100 -70616830 - AluY SINE Alu -6 305 83 1342 103 13 67 chrX 91983100 91983208 -70616722 + AluSx SINE Alu 100 212 -100 332 88 0 0 chrX 91983308 91983365 -70616565 + AluSp/q SINE Alu 247 303 0 2320 92 7 7 chrX 91983422 91983727 -70616203 - AluSx SINE Alu -7 305 1 1220 245 80 80 chrX 91984547 91985058 -70614872 - L2 LINE L2 0 3313 2795 2240 97 3 10 chrX 91985058 91985366 -70614564 + AluSx SINE Alu 6 311 -1 1220 245 80 80 chrX 91985366 91985628 -70614302 - L2 LINE L2 -518 2795 2535 4517 102 31 22 chrX 91985630 91986154 -70613776 - LTR8 LTR ERV1 0 691 158 2109 84 7 33 chrX 91986154 91986453 -70613477 - AluY SINE Alu -20 291 1 4517 102 31 22 chrX 91986453 91986613 -70613317 - LTR8 LTR ERV1 -533 158 1 251 196 0 0 chrX 91986618 91986669 -70613261 + MER116 DNA Mariner 3 53 -27 2160 106 23 0 chrX 91986672 91986974 -70612956 - AluSq SINE Alu -3 310 2 424 277 14 28 chrX 91987008 91987149 -70612781 - L2 LINE L2 -781 2533 2395 2349 78 0 23 chrX 91987223 91987532 -70612398 + AluY SINE Alu 1 302 -9 2192 99 0 7 chrX 91987974 91988267 -70611663 - AluSx SINE Alu -21 291 1 1867 158 0 14 chrX 91988454 91988746 -70611184 + AluJb SINE Alu 1 288 -24 671 265 29 0 chrX 91989485 91989655 -70610275 + FAM SINE Alu 1 175 0 2120 87 0 52 chrX 91990787 91991096 -70608834 + AluSg SINE Alu 1 293 -17 1218 168 131 7 chrX 91992263 91992560 -70607370 - L1MA6 LINE L1 -2 6298 5965 2361 86 0 0 chrX 91992563 91992864 -70607066 - AluSg SINE Alu -9 301 1 2337 93 26 0 chrX 91992910 91993212 -70606718 - AluSq SINE Alu -3 310 1 2381 68 7 0 chrX 91993819 91994113 -70605817 - AluY SINE Alu -15 296 1 230 306 16 0 chrX 91994146 91994208 -70605722 + L2 LINE L2 3210 3272 0 56 34 0 11 chrX 91994220 91994245 -70605685 + AT_rich Low_complexity Low_complexity 1 25 -62 2213 113 0 0 chrX 91994245 91994537 -70605393 + AluSx SINE Alu 1 292 -20 56 34 0 11 chrX 91994537 91994599 -70605331 + AT_rich Low_complexity Low_complexity 25 87 0 343 273 0 34 chrX 91994752 91994840 -70605090 + MER81 DNA DNA 29 113 -1 2177 114 0 3 chrX 91994859 91995166 -70604764 + AluSx SINE Alu 1 306 -6 21 71 0 0 chrX 91995833 91995875 -70604055 + AT_rich Low_complexity Low_complexity 1 42 0 1187 217 81 12 chrX 91996554 91996876 -70603054 - MER2 DNA MER2_type 0 344 1 2273 112 3 0 chrX 91997111 91997416 -70602514 + AluSq SINE Alu 1 306 -7 2655 39 0 0 chrX 91998468 91998773 -70601157 + AluY SINE Alu 1 305 -6 2486 69 3 0 chrX 91998780 91999084 -70600846 + AluSp SINE Alu 1 305 -8 2288 92 3 13 chrX 91999952 92000258 -70599672 - AluSx SINE Alu -9 303 1 2351 57 0 0 chrX 92000702 92001035 -70598895 - AluY SINE Alu 0 333 1 2362 91 0 3 chrX 92002249 92002557 -70597373 - AluSx SINE Alu -5 307 1 2170 109 6 22 chrX 92002585 92002898 -70597032 - AluSx SINE Alu -4 308 1 1163 73 0 0 chrX 92002898 92003034 -70596896 - AluSq/x SINE Alu -176 136 1 1998 131 7 0 chrX 92003311 92003623 -70596307 + AluSx SINE Alu 1 314 0 28 0 0 0 chrX 92003881 92003909 -70596021 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chrX 92005050 92005096 -70594834 + (CA)n Simple_repeat Simple_repeat 2 47 0 393 58 0 0 chrX 92005239 92005291 -70594639 + (TG)n Simple_repeat Simple_repeat 2 53 0 2802 132 40 22 chrX 92005330 92005663 -70594267 - L1MB1 LINE L1 -2 6166 5819 2379 114 0 0 chrX 92005663 92005971 -70593959 - AluSx SINE Alu -4 308 1 2802 132 40 22 chrX 92005971 92006143 -70593787 - L1MB1 LINE L1 -349 5819 5652 227 284 15 0 chrX 92007364 92007431 -70592499 - MIR3 SINE MIR -3 205 138 304 358 94 44 chrX 92008457 92008727 -70591203 + L2 LINE L2 2282 2584 -730 2390 81 0 0 chrX 92008727 92009023 -70590907 - AluSx SINE Alu -16 296 1 304 358 94 44 chrX 92009023 92009188 -70590742 + L2 LINE L2 2584 2739 -575 2640 33 0 3 chrX 92009339 92009644 -70590286 + AluY SINE Alu 1 304 -7 223 367 86 16 chrX 92009662 92009790 -70590140 + L2 LINE L2 2931 3067 -205 183 42 0 0 chrX 92009831 92009855 -70590075 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2266 108 0 0 chrX 92009862 92010169 -70589761 + AluSg SINE Alu 4 310 0 569 298 42 46 chrX 92010173 92010411 -70589519 + MIR SINE MIR 20 256 -6 200 259 0 35 chrX 92010432 92010490 -70589440 + L2 LINE L2 3172 3227 -86 249 326 98 27 chrX 92011000 92011184 -70588746 + L2 LINE L2 2709 2905 -409 2525 54 0 16 chrX 92011392 92011707 -70588223 - AluY SINE Alu -1 310 1 474 252 33 33 chrX 92011744 92011895 -70588035 + L2 LINE L2 3163 3313 0 207 139 0 0 chrX 92012271 92012307 -70587623 + (T)n Simple_repeat Simple_repeat 1 36 0 2103 108 64 22 chrX 92012454 92012814 -70587116 + THE1C LTR MaLR 1 375 0 2221 114 7 0 chrX 92013032 92013330 -70586600 - AluSx SINE Alu -12 300 1 22 0 0 0 chrX 92013507 92013529 -70586401 + AT_rich Low_complexity Low_complexity 1 22 0 1925 159 7 13 chrX 92014389 92014698 -70585232 + AluSx SINE Alu 1 307 -5 2121 120 10 0 chrX 92015808 92016107 -70583823 - AluSx SINE Alu -6 306 5 189 0 0 0 chrX 92016145 92016166 -70583764 + (T)n Simple_repeat Simple_repeat 1 21 0 1931 201 0 0 chrX 92016205 92016519 -70583411 + 7SLRNA srpRNA srpRNA 2 315 -5 2235 166 49 66 chrX 92016604 92017133 -70582797 - MLT2B1 LTR ERVL 0 520 1 378 250 48 3 chrX 92017517 92017688 -70582242 + MIR SINE MIR 1 230 -32 931 258 114 58 chrX 92017767 92018289 -70581641 - L2 LINE L2 -32 3281 2733 800 238 150 48 chrX 92018291 92018547 -70581383 - L2 LINE L2 -952 2362 2134 2436 82 0 22 chrX 92018547 92018864 -70581066 + AluSx SINE Alu 3 312 0 800 238 150 48 chrX 92018864 92019028 -70580902 - L2 LINE L2 -1180 2134 1899 1094 156 0 0 chrX 92019421 92019575 -70580355 + FRAM SINE Alu 1 153 -23 27 49 0 0 chrX 92019575 92019616 -70580314 + AT_rich Low_complexity Low_complexity 1 41 0 318 248 161 0 chrX 92020986 92021123 -70578807 + L1ME4a LINE L1 5961 6119 -2 549 171 152 13 chrX 92021312 92021447 -70578483 + MER5A DNA MER1_type 4 159 -30 281 162 61 20 chrX 92021501 92021600 -70578330 + CT-rich Low_complexity Low_complexity 5 107 0 1406 228 57 47 chrX 92021632 92022146 -70577784 - MER39 LTR ERV1 -7 681 1 2249 116 0 7 chrX 92022244 92022547 -70577383 - AluSg SINE Alu -9 301 1 1134 140 37 7 chrX 92022816 92023155 -70576775 + MLT1B LTR MaLR 1 390 0 309 307 23 0 chrX 92024152 92024240 -70575690 - L1MC4 LINE L1 -1339 6703 6614 2399 76 0 7 chrX 92024241 92024532 -70575398 - AluSx SINE Alu -8 304 16 1984 56 0 0 chrX 92025186 92025418 -70574512 + AluSq SINE Alu 1 232 -81 211 139 0 23 chrX 92025445 92025488 -70574442 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 475 268 14 56 chrX 92025755 92025897 -70574033 + MIR3 SINE MIR 44 179 -29 294 287 0 11 chrX 92026284 92026371 -70573559 + MIR SINE MIR 68 153 -109 223 263 0 132 chrX 92026626 92026692 -70573238 - L2 LINE L2 -189 3083 3035 2243 37 45 0 chrX 92026692 92026984 -70572946 + AluY SINE Alu 1 304 0 223 263 0 132 chrX 92026984 92027030 -70572900 - L2 LINE L2 -237 3035 2985 2456 78 0 3 chrX 92027746 92028055 -70571875 + AluY SINE Alu 1 308 -3 781 231 0 11 chrX 92028128 92028314 -70571616 + L1PB4 LINE L1 5969 6152 -4 1753 177 7 3 chrX 92028991 92029274 -70570656 - AluJo SINE Alu -28 284 1 372 316 16 77 chrX 92029287 92029534 -70570396 + L2 LINE L2 2542 2773 -541 2325 86 0 3 chrX 92029541 92029832 -70570098 - AluSx SINE Alu -22 290 1 295 189 0 19 chrX 92031043 92031096 -70568834 - L2 LINE L2 -50 3263 3212 23 78 0 0 chrX 92032006 92032057 -70567873 + AT_rich Low_complexity Low_complexity 1 51 0 194 363 99 6 chrX 92032600 92032771 -70567159 + L2 LINE L2 2959 3145 -127 262 227 31 93 chrX 92032872 92032969 -70566961 - L2 LINE L2 -74 3239 3149 1204 190 14 0 chrX 92033412 92033628 -70566302 + MER20 DNA MER1_type 1 219 0 26 0 0 0 chrX 92033649 92033675 -70566255 + AT_rich Low_complexity Low_complexity 1 26 0 428 274 50 6 chrX 92033858 92034037 -70565893 - L1ME4a LINE L1 -4 6117 5931 186 43 0 0 chrX 92034603 92034626 -70565304 + (TG)n Simple_repeat Simple_repeat 2 24 0 2401 85 3 0 chrX 92034729 92035034 -70564896 - AluSg SINE Alu -4 306 1 23 33 0 0 chrX 92035309 92035339 -70564591 + AT_rich Low_complexity Low_complexity 1 30 0 2143 101 0 39 chrX 92035492 92035799 -70564131 + AluSg SINE Alu 3 297 -13 1693 155 7 71 chrX 92036040 92036350 -70563580 - AluJo SINE Alu -22 290 1 1305 230 92 40 chrX 92036661 92037087 -70562843 - MLT1L LTR MaLR -8 607 160 2385 82 0 7 chrX 92037117 92037422 -70562508 + AluSx SINE Alu 1 303 -9 488 177 42 126 chrX 92037754 92037969 -70561961 - L2 LINE L2 0 3313 3117 2258 110 0 28 chrX 92038533 92038851 -70561079 + AluSx SINE Alu 1 309 -3 208 319 66 105 chrX 92040024 92040585 -70559345 + L2 LINE L2 2220 2758 -556 186 133 0 0 chrX 92040821 92040851 -70559079 + (T)n Simple_repeat Simple_repeat 1 30 0 1881 139 51 0 chrX 92040853 92041147 -70558783 - AluSx SINE Alu -1 311 3 240 434 81 0 chrX 92041189 92041325 -70558605 + L2 LINE L2 3119 3265 -7 2375 75 0 26 chrX 92042861 92043169 -70556761 - AluSq SINE Alu -13 300 1 225 232 29 0 chrX 92043578 92043647 -70556283 - MER69 DNA AcHobo 0 2526 2456 475 176 185 0 chrX 92043667 92043786 -70556144 - MER69 DNA AcHobo -2385 141 1 181 293 17 0 chrX 92043927 92043985 -70555945 - L2 LINE L2 -1 3312 3254 1412 165 19 15 chrX 92045326 92045593 -70554337 - L1PA12 LINE L1 -7307 274 7 292 114 0 0 chrX 92045605 92045649 -70554281 - Alu SINE Alu -13 289 246 278 226 40 73 chrX 92045662 92045839 -70554091 - L1 LINE L1 -2123 4023 3853 1493 152 62 70 chrX 92045854 92046223 -70553707 - LTR10A LTR ERV1 -63 546 181 241 251 145 63 chrX 92046225 92046432 -70553498 - LTR10A LTR ERV1 -374 235 12 4687 173 35 5 chrX 92046463 92047440 -70552490 - Tigger3b DNA MER2_type 0 1231 226 403 220 9 28 chrX 92048681 92048790 -70551140 - MIR SINE MIR 0 262 156 1852 141 32 18 chrX 92048790 92049130 -70550800 - Tigger3b DNA MER2_type 0 1231 887 2900 154 32 9 chrX 92049133 92049660 -70550270 - Tigger3b DNA MER2_type -691 540 2 229 315 35 49 chrX 92049662 92049805 -70550125 - MIR SINE MIR -121 141 1 23 54 0 0 chrX 92049994 92050031 -70549899 + AT_rich Low_complexity Low_complexity 1 37 0 2309 101 0 0 chrX 92050356 92050653 -70549277 + AluSx SINE Alu 1 297 -15 1340 166 25 116 chrX 92050655 92050975 -70548955 + AluJo SINE Alu 1 291 -21 787 289 25 33 chrX 92051650 92051892 -70548038 - MIR SINE MIR 0 262 23 204 40 0 0 chrX 92052035 92052060 -70547870 + (TGG)n Simple_repeat Simple_repeat 1 25 0 205 290 58 0 chrX 92053067 92053136 -70546794 - MIR SINE MIR -133 129 57 22 56 0 0 chrX 92054328 92054364 -70545566 + AT_rich Low_complexity Low_complexity 1 36 0 361 111 14 14 chrX 92054487 92054559 -70545371 + LTR26 LTR ERV1 1 72 -531 1026 151 0 0 chrX 92054559 92054738 -70545192 + AluSg/x SINE Alu 135 313 0 2037 150 13 0 chrX 92054740 92055047 -70544883 + AluJb SINE Alu 1 311 -1 1060 91 15 86 chrX 92055050 92055248 -70544682 + LTR26 LTR ERV1 43 226 -377 475 62 49 0 chrX 92055350 92055431 -70544499 + L1PA4 LINE L1 6066 6150 -5 6193 92 15 31 chrX 92055452 92056521 -70543409 + L1PA11 LINE L1 5120 6174 0 588 96 0 12 chrX 92056768 92056851 -70543079 - AluSg SINE Alu -227 83 2 837 215 56 0 chrX 92056854 92057049 -70542881 - MIR SINE MIR -56 206 1 1066 197 45 0 chrX 92057066 92057289 -70542641 - MIR SINE MIR 0 262 30 2449 90 0 0 chrX 92057709 92058010 -70541920 + AluSg SINE Alu 1 301 -9 872 90 82 0 chrX 92058118 92058252 -70541678 - L1PA7 LINE L1 0 6154 6010 553 156 0 0 chrX 92058376 92058472 -70541458 - AluSg/x SINE Alu -2 308 213 309 366 30 0 chrX 92058477 92058608 -70541322 - L2 LINE L2 -613 2701 2567 1261 278 23 43 chrX 92058630 92059167 -70540763 - MLT2D LTR ERVL 0 520 3 278 358 75 0 chrX 92059324 92059444 -70540486 - L2 LINE L2 -962 2352 2224 1108 223 120 29 chrX 92059470 92059779 -70540151 - MLT1C LTR MaLR 0 467 131 961 201 0 0 chrX 92059779 92059943 -70539987 - FRAM SINE Alu -13 163 1 1905 184 44 16 chrX 92060061 92060557 -70539373 - Charlie1b DNA MER1_type 0 523 14 2463 73 0 0 chrX 92060613 92060913 -70539017 + AluSg1 SINE Alu 1 300 -9 472 62 15 0 chrX 92061021 92061086 -70538844 - MSTA LTR MaLR -362 66 1 235 369 0 0 chrX 92061171 92061255 -70538675 - L2 LINE L2 -50 3263 3180 214 190 38 63 chrX 92061446 92061604 -70538326 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 524 42 14 0 chrX 92061608 92061679 -70538251 + (TA)n Simple_repeat Simple_repeat 1 72 0 261 347 74 0 chrX 92062249 92062344 -70537586 - MIR SINE MIR -9 253 152 751 121 18 174 chrX 92062905 92063129 -70536801 + MER53 DNA DNA 1 189 0 496 298 78 45 chrX 92063143 92063388 -70536542 + MIR SINE MIR 10 262 0 255 194 32 0 chrX 92063767 92063829 -70536101 - L1MB7 LINE L1 -16 6168 6105 834 90 0 0 chrX 92063829 92063940 -70535990 + AluSq/x SINE Alu 1 111 -202 786 152 41 0 chrX 92063941 92064086 -70535844 + MER20 DNA MER1_type 69 219 0 211 200 0 0 chrX 92064809 92064849 -70535081 + (CACCAT)n Simple_repeat Simple_repeat 5 44 0 347 281 67 18 chrX 92064852 92065016 -70534914 - MIR SINE MIR -7 255 84 1915 144 3 0 chrX 92066105 92066424 -70533506 + AluSx SINE Alu 1 320 0 2341 87 3 0 chrX 92066752 92067052 -70532878 - AluSx SINE Alu -11 301 1 255 331 24 16 chrX 92067061 92067185 -70532745 + L2 LINE L2 1838 1962 -1352 1259 137 0 5 chrX 92067199 92067396 -70532534 - L1PB4 LINE L1 -7 6149 5954 244 139 0 0 chrX 92067397 92067440 -70532490 - L1PB4 LINE L1 -165 5991 5949 186 306 62 104 chrX 92067444 92067566 -70532364 + L2 LINE L2 1959 2085 -1229 2458 85 0 3 chrX 92067566 92067873 -70532057 - AluSq SINE Alu -7 306 1 186 306 62 104 chrX 92067873 92067921 -70532009 + L2 LINE L2 2085 2133 -1181 396 356 6 11 chrX 92067921 92068098 -70531832 - MER5B DNA MER1_type -2 176 1 186 306 62 104 chrX 92068098 92068214 -70531716 + L2 LINE L2 2133 2234 -1080 1737 155 0 61 chrX 92068427 92068585 -70531345 - AluJo SINE Alu -21 291 160 2460 70 10 0 chrX 92068585 92068886 -70531044 - AluSg SINE Alu -2 308 5 1737 155 0 61 chrX 92068886 92069037 -70530893 - AluJo SINE Alu -152 160 1 1836 161 0 35 chrX 92069511 92069827 -70530103 + AluJb SINE Alu 6 310 -2 491 319 67 69 chrX 92069858 92070046 -70529884 + L2 LINE L2 1855 2042 -1272 661 171 120 0 chrX 92070046 92070163 -70529767 - FLAM_A SINE Alu -2 131 1 491 319 67 69 chrX 92070163 92070379 -70529551 + L2 LINE L2 2042 2258 -1056 306 0 0 0 chrX 92070387 92070421 -70529509 + (TG)n Simple_repeat Simple_repeat 2 35 0 452 331 148 32 chrX 92070447 92070819 -70529111 + L2 LINE L2 2855 3269 -3 2456 71 7 0 chrX 92072078 92072387 -70527543 + AluY SINE Alu 1 311 0 254 240 0 80 chrX 92072849 92072924 -70527006 + L2 LINE L2 3200 3268 -4 390 169 0 0 chrX 92073400 92073477 -70526453 + L1 LINE L1 4780 4856 -1290 2269 128 12 2 chrX 92073483 92073886 -70526044 + L1P4 LINE L1 5221 5627 -541 602 277 23 17 chrX 92074174 92074351 -70525579 + MER5B DNA MER1_type 1 178 0 8393 68 8 1 chrX 92074541 92075713 -70524217 - L1P LINE L1 -768 5378 4198 1497 88 0 0 chrX 92075813 92076005 -70523925 - AluSp SINE Alu -121 192 1 257 392 42 0 chrX 92076464 92076630 -70523300 + L3 LINE CR1 216 388 -1189 242 320 117 0 chrX 92076832 92076935 -70522995 + L2 LINE L2 3199 3313 0 667 323 72 6 chrX 92077367 92077729 -70522201 - MARNA DNA Mariner -122 464 79 353 231 109 27 chrX 92078216 92078363 -70521567 + L3b LINE CR1 1278 1436 -147 2348 81 0 19 chrX 92079486 92079796 -70520134 + AluSp SINE Alu 1 304 -9 384 232 288 24 chrX 92080282 92080401 -70519529 - L2 LINE L2 -182 3131 3045 2450 60 20 0 chrX 92080401 92080699 -70519231 - AluSp SINE Alu -9 304 1 384 232 288 24 chrX 92080699 92080881 -70519049 - L2 LINE L2 -268 3045 2758 4578 158 6 12 chrX 92081981 92082876 -70517054 - Harlequin LTR ERV1 -618 6031 3375 930 213 31 1 chrX 92082919 92083165 -70516765 - Harlequin LTR ERV1 -1924 4725 2767 653 313 79 0 chrX 92085263 92085477 -70514453 + MIR SINE MIR 31 261 -1 1775 67 0 0 chrX 92086755 92086965 -70512965 + AluSq SINE Alu 1 210 -103 317 130 0 0 chrX 92086966 92087020 -70512910 + AluSq SINE Alu 247 300 -1 198 184 0 0 chrX 92087082 92087120 -70512810 - L2 LINE L2 -5 3308 3271 2263 83 3 20 chrX 92089107 92089409 -70510521 - AluSg1 SINE Alu -12 297 1 2273 128 58 0 chrX 92090749 92091147 -70508783 - L1MA9 LINE L1 0 6312 5892 737 173 8 8 chrX 92091262 92091395 -70508535 - FLAM_A SINE Alu 0 133 1 849 191 0 19 chrX 92091966 92092123 -70507807 + MER5A DNA MER1_type 32 185 -4 270 0 0 0 chrX 92092573 92092603 -70507327 + (TG)n Simple_repeat Simple_repeat 2 31 0 1065 162 0 0 chrX 92093319 92093486 -70506444 - MER45A DNA AcHobo -4 174 8 2346 87 3 3 chrX 92094219 92094517 -70505413 - AluSp SINE Alu -15 298 1 356 203 13 0 chrX 92096098 92096177 -70503753 + MER116 DNA Mariner 1 80 0 25 75 0 0 chrX 92097329 92097382 -70502548 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chrX 92098938 92098967 -70500963 + AT_rich Low_complexity Low_complexity 1 29 0 36100 82 9 11 chrX 92099777 92104743 -70495187 + L1PA6 LINE L1 11 4959 -1195 2341 86 0 13 chrX 92104743 92105044 -70494886 + AluY SINE Alu 3 299 -12 36100 82 9 11 chrX 92105044 92106238 -70493692 + L1PA6 LINE L1 4959 6154 0 381 43 0 0 chrX 92107741 92107788 -70492142 + (CA)n Simple_repeat Simple_repeat 1 47 0 1784 122 0 4 chrX 92107820 92108074 -70491856 + AluSx SINE Alu 57 309 -3 714 196 32 32 chrX 92108113 92108302 -70491628 - Tigger7 DNA MER2_type 0 2487 2299 * 998 225 177 4 chrX 92108299 92108570 -70491360 - Tigger7 DNA MER2_type -2169 318 1 659 215 0 23 chrX 92109466 92109596 -70490334 - FLAM_A SINE Alu -6 127 1 1034 211 67 7 chrX 92109636 92109937 -70489993 - MER58B DNA MER1_type 0 341 11 520 256 183 0 chrX 92109961 92110141 -70489789 + MIR SINE MIR 50 262 0 22 0 0 0 chrX 92110344 92110366 -70489564 + AT_rich Low_complexity Low_complexity 1 22 0 222 360 24 8 chrX 92111765 92111890 -70488040 - L3 LINE CR1 -864 713 587 182 396 25 25 chrX 92112126 92112285 -70487645 + L2 LINE L2 2717 2875 -439 689 226 100 0 chrX 92112384 92112574 -70487356 + L1ME2 LINE L1 5937 6145 -19 2193 195 25 57 chrX 92113205 92113732 -70486198 - LTR40a LTR ERVL -2 517 8 959 186 25 51 chrX 92114675 92114911 -70485019 + MER106A DNA MER1_type 7 236 0 2003 132 0 33 chrX 92114993 92115297 -70484633 - AluJb SINE Alu -18 294 1 1295 124 120 22 chrX 92115633 92115869 -70484061 + L1MA8 LINE L1 5986 6197 -94 2115 117 0 20 chrX 92115869 92116169 -70483761 + AluSx SINE Alu 5 298 -14 1295 124 120 22 chrX 92116169 92116180 -70483750 + L1MA8 LINE L1 6197 6206 -85 279 79 0 0 chrX 92116180 92116218 -70483712 + (TG)n Simple_repeat Simple_repeat 2 39 0 1295 124 120 22 chrX 92116218 92116243 -70483687 + L1MA8 LINE L1 6206 6286 -5 307 336 8 8 chrX 92116330 92116458 -70483472 + L2 LINE L2 2209 2336 -978 2232 97 0 17 chrX 92116662 92116962 -70482968 - AluSx SINE Alu -17 295 1 622 214 168 30 chrX 92117065 92117267 -70482663 + MER33 DNA MER1_type 1 167 -2457 2349 81 0 3 chrX 92117267 92117563 -70482367 + AluSx SINE Alu 1 295 -17 622 214 168 30 chrX 92117563 92117633 -70482297 + MER33 DNA MER1_type 167 341 -22 191 200 73 18 chrX 92117840 92117895 -70482035 + MIR SINE MIR 152 209 -53 2090 125 0 25 chrX 92118041 92118360 -70481570 - AluSx SINE Alu -1 311 1 21 36 0 0 chrX 92118510 92118538 -70481392 + AT_rich Low_complexity Low_complexity 1 28 0 2373 72 3 20 chrX 92118621 92118925 -70481005 + AluSp SINE Alu 1 299 -14 25 31 0 0 chrX 92120364 92120396 -70479534 + AT_rich Low_complexity Low_complexity 1 32 0 1898 137 0 55 chrX 92122658 92122849 -70477081 - AluSx SINE Alu -2 310 143 2236 122 0 0 chrX 92122849 92123160 -70476770 - AluSx SINE Alu -1 311 1 1898 137 0 55 chrX 92123160 92123296 -70476634 - AluSx SINE Alu -169 143 1 24 0 0 0 chrX 92123572 92123596 -70476334 + AT_rich Low_complexity Low_complexity 1 24 0 1951 153 0 16 chrX 92123602 92123909 -70476021 + AluJb SINE Alu 1 302 -10 204 331 29 66 chrX 92124325 92124461 -70475469 - L2 LINE L2 -261 3011 2881 252 319 150 59 chrX 92124701 92124783 -70475147 - L2 LINE L2 -827 2487 2414 2284 97 0 10 chrX 92124783 92125083 -70474847 - AluSc SINE Alu -12 297 1 252 319 150 59 chrX 92125083 92125574 -70474356 - L2 LINE L2 -900 2414 1862 258 281 124 50 chrX 92125634 92125755 -70474175 - L2 LINE L2 -4 3268 3139 2442 71 7 0 chrX 92126169 92126478 -70473452 - AluY SINE Alu 0 311 1 448 331 148 32 chrX 92127737 92128109 -70471821 - L2 LINE L2 -3 3269 2855 306 0 0 0 chrX 92128135 92128169 -70471761 + (CA)n Simple_repeat Simple_repeat 2 35 0 490 319 67 69 chrX 92128177 92128393 -70471537 - L2 LINE L2 -1056 2258 2042 655 171 120 0 chrX 92128393 92128510 -70471420 + FLAM_A SINE Alu 1 131 -2 490 319 67 69 chrX 92128510 92128698 -70471232 - L2 LINE L2 -1272 2042 1855 1805 165 0 35 chrX 92128729 92129045 -70470885 - AluJb SINE Alu -2 310 6 1707 160 0 52 chrX 92129519 92129667 -70470263 + AluJo SINE Alu 1 126 -186 2235 71 27 0 chrX 92129667 92129963 -70469967 + AluSg SINE Alu 5 308 -2 1707 160 0 52 chrX 92129963 92130121 -70469809 + AluJo SINE Alu 126 291 -21 413 356 6 11 chrX 92130450 92130627 -70469303 + MER5B DNA MER1_type 1 176 -2 2475 87 0 0 chrX 92130675 92130985 -70468945 + AluSq SINE Alu 1 310 -3 257 139 0 0 chrX 92131111 92131154 -70468776 + L1PB4 LINE L1 5949 5991 -165 1240 142 0 5 chrX 92131155 92131352 -70468578 + L1PB4 LINE L1 5954 6149 -7 252 331 24 16 chrX 92131366 92131490 -70468440 - L2 LINE L2 -1352 1962 1838 1734 58 5 0 chrX 92131499 92131704 -70468226 + AluSp SINE Alu 1 206 -107 23 33 0 0 chrX 92131864 92131894 -70468036 + AT_rich Low_complexity Low_complexity 1 30 0 2397 78 7 0 chrX 92131901 92132208 -70467722 + AluSc SINE Alu 1 309 0 1424 188 7 65 chrX 92133258 92133566 -70466364 - AluJo SINE Alu -22 290 1 1878 116 0 98 chrX 92135776 92136113 -70463817 - AluY SINE Alu -7 304 1 314 301 98 30 chrX 92141584 92141717 -70458213 + L2 LINE L2 2708 2849 -465 232 220 0 0 chrX 92143161 92143211 -70456719 + L2 LINE L2 3264 3313 0 826 252 128 8 chrX 92143327 92143738 -70456192 - L1ME4a LINE L1 -4 6117 5658 22 0 0 0 chrX 92143891 92143913 -70456017 + AT_rich Low_complexity Low_complexity 1 22 0 229 224 194 0 chrX 92143999 92144066 -70455864 + MER116 DNA Mariner 1 80 0 393 273 50 0 chrX 92144709 92144870 -70455060 + L1ME4a LINE L1 5880 6048 -73 23 0 0 29 chrX 92144920 92144939 -70454991 + AT_rich Low_complexity Low_complexity 1 20 -13 2377 81 0 3 chrX 92144939 92145234 -70454696 + AluSc SINE Alu 1 294 -15 23 0 0 29 chrX 92145234 92145248 -70454682 + AT_rich Low_complexity Low_complexity 20 33 0 2559 24 3 3 chrX 92146471 92146767 -70453163 + AluY SINE Alu 1 296 -15 747 222 102 44 chrX 92147073 92147374 -70452556 - L1MC5 LINE L1 -50 7911 7582 2197 101 20 0 chrX 92147374 92147680 -70452250 - AluSx SINE Alu 0 312 1 747 222 102 44 chrX 92147680 92147761 -70452169 - L1MC5 LINE L1 -379 7582 7507 1985 230 116 29 chrX 92147793 92148048 -70451882 - MLT1F LTR MaLR -3 539 308 1370 166 213 0 chrX 92148048 92148349 -70451581 + MLT1A1 LTR MaLR 1 365 0 1985 230 116 29 chrX 92148349 92148585 -70451345 - MLT1F LTR MaLR -234 308 5 243 189 0 0 chrX 92148632 92148685 -70451245 + T-rich Low_complexity Low_complexity 1 53 0 537 191 0 0 chrX 92148685 92148769 -70451161 - AluJ/FLAM SINE Alu -228 84 1 828 206 127 79 chrX 92148774 92149245 -70450685 - L1MC5 LINE L1 -493 7468 6975 197 319 0 14 chrX 92149276 92149348 -70450582 + MER5B DNA MER1_type 86 156 -22 189 241 93 0 chrX 92149371 92149425 -70450505 - MER5A DNA MER1_type -68 121 63 819 224 55 23 chrX 92149627 92149846 -70450084 + MIR SINE MIR 3 228 -34 461 274 95 24 chrX 92149958 92150126 -70449804 - MIR SINE MIR -12 250 71 1263 194 23 35 chrX 92150157 92150377 -70449553 + MIR SINE MIR 8 226 -36 1359 140 214 11 chrX 92150377 92150662 -70449268 - MER61A LTR ERV1 0 343 1 1263 194 23 35 chrX 92150662 92150699 -70449231 + MIR SINE MIR 226 262 0 510 342 16 22 chrX 92151213 92151397 -70448533 + MIR3 SINE MIR 20 202 -6 2085 106 7 0 chrX 92153748 92154030 -70445900 - AluSx SINE Alu -3 309 26 588 221 2 21 chrX 92154056 92154204 -70445726 - MIR SINE MIR -61 201 60 256 318 47 12 chrX 92154195 92154280 -70445650 + MIR SINE MIR 37 124 -84 * 1766 74 12 62 chrX 92154548 92154806 -70445124 + AluY SINE Alu 1 245 -66 2311 97 6 0 chrX 92155201 92155512 -70444418 - AluSp SINE Alu 0 313 1 207 234 0 21 chrX 92155520 92155567 -70444363 - L2 LINE L2 -13 3300 3255 192 40 0 0 chrX 92155635 92155660 -70444270 + (CA)n Simple_repeat Simple_repeat 1 25 0 1633 175 55 6 chrX 92155691 92156016 -70443914 - MER2 DNA MER2_type 0 344 4 2226 120 3 0 chrX 92156050 92156351 -70443579 - AluSq SINE Alu -9 304 3 559 300 121 6 chrX 92156402 92156725 -70443205 + MARNA DNA Mariner 197 556 -30 205 259 52 17 chrX 92158719 92158777 -70441153 + L2 LINE L2 3203 3262 -10 225 232 18 18 chrX 92160559 92160615 -70439315 + (CATA)n Simple_repeat Simple_repeat 1 56 0 2487 70 6 3 chrX 92161775 92162087 -70437843 + AluSq SINE Alu 1 313 0 644 320 26 4 chrX 92162112 92162340 -70437590 - MIR SINE MIR -10 252 20 201 405 43 17 chrX 92162533 92162649 -70437281 - L3b LINE CR1 -27 1556 1438 510 333 59 0 chrX 92163061 92163214 -70436716 + L2 LINE L2 3111 3272 0 1426 187 79 29 chrX 92163633 92163678 -70436252 + MER58B DNA MER1_type 11 52 -2368 2130 97 0 23 chrX 92163678 92163692 -70436238 - AluSg SINE Alu -17 293 280 183 42 0 0 chrX 92163692 92163716 -70436214 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2130 97 0 23 chrX 92163716 92164000 -70435930 - AluSg SINE Alu -30 280 2 1426 187 79 29 chrX 92164000 92164045 -70435885 + MER58B DNA MER1_type 52 93 -2327 1983 124 14 0 chrX 92164045 92164328 -70435602 + AluSx SINE Alu 1 287 -25 1426 187 79 29 chrX 92164328 92164551 -70435379 + MER58B DNA MER1_type 93 341 0 2285 98 0 3 chrX 92164848 92165145 -70434785 + AluSx SINE Alu 1 296 -16 23 33 0 0 chrX 92166847 92166877 -70433053 + AT_rich Low_complexity Low_complexity 1 30 0 2230 62 65 10 chrX 92167043 92167335 -70432595 + AluSp SINE Alu 1 308 -5 456 19 0 0 chrX 92167350 92167403 -70432527 + (CA)n Simple_repeat Simple_repeat 2 54 0 2042 115 7 3 chrX 92167413 92167700 -70432230 + AluSx SINE Alu 1 288 -24 1932 96 74 0 chrX 92167708 92167978 -70431952 + AluSx SINE Alu 1 290 -22 239 196 0 0 chrX 92167992 92168043 -70431887 + L1MC4 LINE L1 6649 6699 -1343 543 234 39 8 chrX 92169945 92170073 -70429857 + MIR3 SINE MIR 74 205 -3 1895 214 33 7 chrX 92170396 92170850 -70429080 + MLT1C LTR MaLR 2 467 0 2035 194 44 16 chrX 92171568 92172021 -70427909 - MER31B LTR ERV1 0 466 1 22 35 0 0 chrX 92172361 92172390 -70427540 + AT_rich Low_complexity Low_complexity 1 29 0 244 362 0 0 chrX 92172949 92173043 -70426887 + GA-rich Low_complexity Low_complexity 1 94 0 373 255 57 96 chrX 92174351 92174382 -70425548 + MER5A DNA MER1_type 36 67 -122 439 136 0 0 chrX 92174382 92174463 -70425467 + L1MA7 LINE L1 6207 6287 -4 373 255 57 96 chrX 92174463 92174588 -70425342 + MER5A DNA MER1_type 67 186 -3 694 298 48 5 chrX 92174592 92174800 -70425130 + MIR SINE MIR 10 226 -36 2242 76 35 0 chrX 92174982 92175270 -70424660 + AluSc SINE Alu 1 298 -11 359 266 135 14 chrX 92175655 92175806 -70424124 + MIR SINE MIR 55 216 -46 13287 188 24 32 chrX 92177121 92177633 -70422297 - L1MB1 LINE L1 0 7587 7073 2217 97 0 10 chrX 92177633 92177941 -70421989 - AluSg SINE Alu -5 305 1 13287 188 24 32 chrX 92177941 92178339 -70421591 - L1MB1 LINE L1 -514 7073 6673 2201 113 3 0 chrX 92178339 92178660 -70421270 - AluSp SINE Alu 0 313 1 13287 188 24 32 chrX 92178660 92181773 -70418157 - L1MB1 LINE L1 -914 6673 3561 2135 92 45 3 chrX 92181773 92182065 -70417865 - AluSc SINE Alu -5 304 1 13287 188 24 32 chrX 92182065 92182524 -70417406 - L1MB1 LINE L1 -4026 3561 3100 1072 197 92 5 chrX 92182527 92182745 -70417185 + AluJb SINE Alu 1 237 -75 2328 103 0 3 chrX 92183863 92184175 -70415755 - AluSx SINE Alu -1 311 1 180 0 0 0 chrX 92184176 92184196 -70415734 + (T)n Simple_repeat Simple_repeat 1 20 0 269 185 7 233 chrX 92184595 92184645 -70415285 - L2 LINE L2 -9 3304 3306 741 196 184 6 chrX 92184645 92184824 -70415106 + MER58C DNA MER1_type 1 211 -4 269 185 7 233 chrX 92184824 92184919 -70415011 - L2 LINE L2 -6 3307 3192 182 260 100 0 chrX 92184969 92185019 -70414911 + L2 LINE L2 3259 3313 0 396 193 37 123 chrX 92186610 92186667 -70413263 - MER39 LTR ERV1 0 707 647 213 39 0 0 chrX 92186667 92186693 -70413237 + (CAA)n Simple_repeat Simple_repeat 2 27 0 396 193 37 123 chrX 92186693 92186737 -70413193 - MER39 LTR ERV1 -60 647 601 2312 94 0 0 chrX 92186737 92187071 -70412859 - AluSx SINE Alu 0 334 1 396 193 37 123 chrX 92187071 92187153 -70412777 - MER39 LTR ERV1 -106 601 537 21 0 0 0 chrX 92187161 92187182 -70412748 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chrX 92187196 92187221 -70412709 + (T)n Simple_repeat Simple_repeat 1 25 0 43029 32 21 1 chrX 92187233 92193248 -70406682 - L1PA3 LINE L1 -3 6152 13 715 231 22 76 chrX 92193248 92193591 -70406339 - MER39 LTR ERV1 -156 551 1 2234 101 0 10 chrX 92193694 92194002 -70405928 + AluSg SINE Alu 1 305 -5 857 204 51 0 chrX 92194438 92194614 -70405316 - AluJ SINE Alu -6 306 122 710 130 81 0 chrX 92194677 92194800 -70405130 - L1MA9 LINE L1 -9 6303 6171 378 237 0 0 chrX 92196204 92196301 -70403629 + (TA)n Simple_repeat Simple_repeat 2 98 0 2110 73 66 0 chrX 92197441 92197729 -70402201 - AluSg SINE Alu -3 307 1 2018 153 42 8 chrX 92198678 92199031 -70400899 + MLT1A1 LTR MaLR 1 365 0 1939 123 83 9 chrX 92199211 92199560 -70400370 + THE1C LTR MaLR 1 375 0 310 308 224 6 chrX 92199737 92199893 -70400037 - MIR3 SINE MIR -3 205 16 752 157 8 15 chrX 92200032 92200166 -70399764 - AluJ SINE Alu -169 133 1 545 222 83 74 chrX 92201769 92201985 -70397945 + L2 LINE L2 3094 3311 -2 245 235 0 0 chrX 92202206 92202257 -70397673 - L2 LINE L2 0 3313 3263 982 353 80 15 chrX 92202405 92203006 -70396924 + L2 LINE L2 2026 2665 -649 419 357 91 31 chrX 92203028 92203347 -70396583 + L2 LINE L2 2935 3272 0 2504 153 33 24 chrX 92206034 92206460 -70393470 - MSTB1 LTR MaLR 0 432 3 1651 114 29 8 chrX 92206559 92206804 -70393126 + AluSg SINE Alu 44 293 -17 309 281 36 114 chrX 92207136 92207303 -70392627 - L2 LINE L2 -3 3269 3116 269 344 50 0 chrX 92207561 92207721 -70392209 + L1ME LINE L1 2 169 -5901 181 234 92 119 chrX 92208561 92208779 -70391151 - L2 LINE L2 -1300 2014 1803 314 300 50 0 chrX 92208911 92209051 -70390879 + CT-rich Low_complexity Low_complexity 4 150 0 2074 253 132 14 chrX 92210748 92211520 -70388410 - L1MC4 LINE L1 -4 8038 7176 23 0 0 0 chrX 92211970 92211993 -70387937 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chrX 92212164 92212207 -70387723 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chrX 92212288 92212319 -70387611 + AT_rich Low_complexity Low_complexity 1 31 0 2797 174 26 11 chrX 92212526 92213065 -70386865 + L1MC3 LINE L1 7237 7783 -2 2332 96 6 6 chrX 92213154 92213466 -70386464 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 92214107 92214135 -70385795 + AT_rich Low_complexity Low_complexity 1 28 0 225 303 104 132 chrX 92214576 92214969 -70384961 - L2 LINE L2 -20 3252 2871 1340 229 114 54 chrX 92215195 92215600 -70384330 + MLT1F LTR MaLR 1 443 -99 2580 40 7 0 chrX 92215600 92215900 -70384030 - AluY SINE Alu -9 302 1 1340 229 114 54 chrX 92215900 92215993 -70383937 + MLT1F LTR MaLR 443 529 -13 1088 254 116 13 chrX 92220698 92221156 -70378774 - MLT1H LTR MaLR 0 590 1 2279 111 0 10 chrX 92221212 92221518 -70378412 - AluSx SINE Alu -6 306 4 389 94 0 0 chrX 92222693 92222746 -70377184 - Alu SINE Alu -249 53 1 252 0 0 0 chrX 92223249 92223277 -70376653 + (TA)n Simple_repeat Simple_repeat 2 29 0 2206 116 0 0 chrX 92224270 92224563 -70375367 + AluSx SINE Alu 2 294 -18 617 316 24 6 chrX 92225447 92225615 -70374315 - MIR SINE MIR -64 198 28 1782 203 58 19 chrX 92227057 92227485 -70372445 - L1MC4 LINE L1 -3 8039 7595 571 125 104 0 chrX 92227483 92227579 -70372351 + L1MC4 LINE L1 7464 7569 -473 * 2311 102 0 0 chrX 92227791 92228096 -70371834 + AluSq SINE Alu 1 305 -8 2151 107 0 17 chrX 92229025 92229325 -70370605 + AluSq SINE Alu 4 298 -15 38 0 0 0 chrX 92229325 92229363 -70370567 + AT_rich Low_complexity Low_complexity 1 38 0 320 329 114 24 chrX 92229705 92229872 -70370058 + MIR3 SINE MIR 20 201 -7 198 103 0 0 chrX 92230274 92230303 -70369627 + (T)n Simple_repeat Simple_repeat 1 29 0 1477 168 180 9 chrX 92230493 92230826 -70369104 - MLT1B LTR MaLR 0 390 1 210 143 0 0 chrX 92231382 92231417 -70368513 + (A)n Simple_repeat Simple_repeat 1 35 0 259 233 60 13 chrX 92231509 92231649 -70368281 + MIR SINE MIR 34 258 -4 247 237 21 0 chrX 92231672 92231765 -70368165 + (TA)n Simple_repeat Simple_repeat 2 96 0 800 263 67 5 chrX 92232329 92232553 -70367377 + MIR SINE MIR 2 239 -23 1408 190 58 48 chrX 92234071 92234476 -70365454 - MLT1C LTR MaLR 0 467 1 358 380 32 63 chrX 92234477 92234919 -70365011 - L2 LINE L2 -28 3244 2817 2322 66 0 0 chrX 92234971 92235245 -70364685 + AluSq SINE Alu 1 274 -39 332 320 88 67 chrX 92235767 92236343 -70363587 - L2 LINE L2 -1 3271 2686 420 195 31 12 chrX 92236602 92236728 -70363202 + Tigger5 DNA MER2_type 13 193 -2130 414 145 0 0 chrX 92236728 92236790 -70363140 + Tigger5 DNA MER2_type 2262 2323 0 2314 101 0 0 chrX 92236924 92237220 -70362710 + AluSc SINE Alu 1 296 -13 204 356 106 10 chrX 92237969 92238073 -70361857 - L2 LINE L2 -5 3267 3154 2248 102 0 0 chrX 92238212 92238507 -70361423 - AluSq SINE Alu -18 295 1 372 277 42 122 chrX 92239808 92239928 -70360002 - MIR SINE MIR -42 220 127 2088 60 3 121 chrX 92239928 92240260 -70359670 + AluSq SINE Alu 1 293 -20 372 277 42 122 chrX 92240260 92240377 -70359553 - MIR SINE MIR -135 127 2 239 155 0 138 chrX 92241848 92241906 -70358024 + MLT1A1 LTR MaLR 147 196 -169 1578 179 26 100 chrX 92242027 92242418 -70357512 - MLT1A1 LTR MaLR -3 362 1 21 36 0 0 chrX 92242693 92242721 -70357209 + AT_rich Low_complexity Low_complexity 1 28 0 526 343 28 0 chrX 92242912 92243090 -70356840 + MIR SINE MIR 66 248 -14 200 387 32 8 chrX 92245215 92245339 -70354591 - MIR SINE MIR -17 245 119 2093 82 0 4 chrX 92245587 92245854 -70354076 + AluSx SINE Alu 41 306 -6 353 234 15 88 chrX 92247616 92247753 -70352177 + MIR3 SINE MIR 81 207 -1 432 0 0 0 chrX 92247790 92247838 -70352092 + (TA)n Simple_repeat Simple_repeat 2 49 0 333 0 0 0 chrX 92247842 92247879 -70352051 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 242 250 98 27 chrX 92247886 92247998 -70351932 - L1MC4 LINE L1 -1311 6731 6612 271 261 155 43 chrX 92248072 92248233 -70351697 + L3b LINE CR1 1172 1350 -233 2416 93 0 0 chrX 92251363 92251675 -70348255 - AluSq SINE Alu -1 312 1 376 351 107 38 chrX 92252187 92252789 -70347141 - L2 LINE L2 -91 3181 2456 2224 191 21 26 chrX 92252822 92253289 -70346641 - MLT1C LTR MaLR 0 467 3 468 238 104 63 chrX 92253606 92253949 -70345981 - LTR31 LTR ERV1 0 783 263 234 333 37 12 chrX 92254128 92254290 -70345640 - L2 LINE L2 -1216 2098 1933 37 39 0 0 chrX 92254423 92254474 -70345456 + AT_rich Low_complexity Low_complexity 1 51 0 196 349 102 28 chrX 92255234 92255449 -70344481 - L2 LINE L2 -214 3058 2828 192 77 0 0 chrX 92255799 92255825 -70344105 + (T)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chrX 92255860 92255885 -70344045 + AT_rich Low_complexity Low_complexity 1 25 0 42632 32 22 2 chrX 92255885 92261903 -70338027 - L1PA3 LINE L1 -1 6154 13 1105 331 76 17 chrX 92263441 92264072 -70335858 + L2 LINE L2 1811 2478 -836 287 263 62 12 chrX 92264761 92264841 -70335089 + L2 LINE L2 3185 3268 -4 339 335 110 45 chrX 92265475 92265720 -70334210 - MIR SINE MIR -1 261 1 386 252 158 8 chrX 92265789 92265916 -70334014 - MIR SINE MIR -11 251 106 279 0 0 0 chrX 92266711 92266742 -70333188 + (TA)n Simple_repeat Simple_repeat 2 32 0 2221 105 3 0 chrX 92266758 92267053 -70332877 + AluSx SINE Alu 9 304 -8 2528 229 62 23 chrX 92267193 92267915 -70332015 - L1M4c LINE L1 -4516 1787 1095 409 40 0 0 chrX 92267915 92267965 -70331965 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 2313 68 7 0 chrX 92267965 92268246 -70331684 - AluSp SINE Alu -30 283 1 21 0 0 0 chrX 92268249 92268270 -70331660 + AT_rich Low_complexity Low_complexity 1 21 0 1935 139 7 26 chrX 92268283 92268586 -70331344 + AluSx SINE Alu 1 297 -15 899 137 0 15 chrX 92268619 92268750 -70331180 + AluSx SINE Alu 1 129 -184 297 207 0 0 chrX 92268752 92268834 -70331096 + (TA)n Simple_repeat Simple_repeat 1 82 0 1179 131 0 0 chrX 92268849 92269017 -70330913 + AluSx SINE Alu 129 296 -16 1331 223 30 3 chrX 92269027 92269391 -70330539 - L1M3c LINE L1 -4869 1412 1039 678 311 52 52 chrX 92269610 92270034 -70329896 - L1M3c LINE L1 -5768 513 4 2512 75 3 0 chrX 92270853 92271158 -70328772 - AluSp SINE Alu -6 307 2 350 167 0 0 chrX 92271341 92271407 -70328523 - AluSp/q SINE Alu 0 303 238 825 84 9 0 chrX 92271414 92271521 -70328409 - AluSq/x SINE Alu -205 108 1 1697 154 0 0 chrX 92272207 92272453 -70327477 + AluSx SINE Alu 1 246 -66 671 224 17 11 chrX 92273346 92273525 -70326405 - MER104 DNA MER2_type 0 180 1 526 195 57 0 chrX 92274095 92274218 -70325712 - L1PA16 LINE L1 -6 6160 6031 * 1448 151 4 3 chrX 92274191 92274460 -70325470 + L1P5 LINE L1 5552 5814 -342 360 0 0 0 chrX 92275447 92275487 -70324443 + (TA)n Simple_repeat Simple_repeat 2 41 0 2142 113 0 0 chrX 92276475 92276786 -70323144 - AluSx SINE Alu 0 311 1 22 0 0 0 chrX 92276786 92276808 -70323122 + AT_rich Low_complexity Low_complexity 1 22 0 360 300 73 0 chrX 92277828 92277938 -70321992 - L2 LINE L2 -16 3256 3139 685 286 12 6 chrX 92278090 92278258 -70321672 - MIR3 SINE MIR -18 190 22 2352 103 0 3 chrX 92280822 92281134 -70318796 - AluSx SINE Alu -1 311 1 180 0 0 0 chrX 92281135 92281155 -70318775 + (T)n Simple_repeat Simple_repeat 1 20 0 271 185 7 233 chrX 92281554 92281604 -70318326 - L2 LINE L2 -9 3304 3306 735 190 184 6 chrX 92281604 92281783 -70318147 + MER58C DNA MER1_type 1 211 -4 271 185 7 233 chrX 92281783 92281878 -70318052 - L2 LINE L2 -6 3307 3192 348 193 37 123 chrX 92283569 92283626 -70316304 - MER39 LTR ERV1 0 707 647 213 39 0 0 chrX 92283626 92283652 -70316278 + (CAA)n Simple_repeat Simple_repeat 2 27 0 348 193 37 123 chrX 92283652 92283696 -70316234 - MER39 LTR ERV1 -60 647 601 2323 94 0 0 chrX 92283696 92284030 -70315900 - AluSx SINE Alu 0 334 1 348 193 37 123 chrX 92284030 92284112 -70315818 - MER39 LTR ERV1 -106 601 537 21 0 0 0 chrX 92284120 92284141 -70315789 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chrX 92284155 92284180 -70315750 + (T)n Simple_repeat Simple_repeat 1 25 0 40943 33 22 2 chrX 92284192 92290208 -70309722 - L1PA3 LINE L1 -3 6152 13 1107 331 76 17 chrX 92291746 92292377 -70307553 + L2 LINE L2 1811 2478 -836 289 263 62 12 chrX 92293066 92293146 -70306784 + L2 LINE L2 3185 3268 -4 333 335 110 45 chrX 92293780 92294025 -70305905 - MIR SINE MIR -1 261 1 385 252 158 8 chrX 92294094 92294221 -70305709 - MIR SINE MIR -11 251 106 279 0 0 0 chrX 92295016 92295047 -70304883 + (TA)n Simple_repeat Simple_repeat 2 32 0 2239 105 3 0 chrX 92295063 92295358 -70304572 + AluSx SINE Alu 9 304 -8 265 259 133 29 chrX 92295363 92295672 -70304258 - L1MC4a LINE L1 -95 6026 5686 27 29 0 0 chrX 92296904 92296938 -70302992 + AT_rich Low_complexity Low_complexity 1 34 0 595 309 109 56 chrX 92299198 92300081 -70299849 + L1ME4a LINE L1 4710 5637 -752 322 214 183 0 chrX 92300108 92300239 -70299691 + L1ME4a LINE L1 5820 5974 -147 360 48 65 0 chrX 92301579 92301641 -70298289 + CT-rich Low_complexity Low_complexity 3 68 0 2454 78 16 0 chrX 92301643 92301951 -70297979 - AluSp SINE Alu 0 313 1 212 250 0 0 chrX 92303198 92303242 -70296688 + GA-rich Low_complexity Low_complexity 1 44 0 189 258 21 113 chrX 92304301 92304398 -70295532 + MIR SINE MIR 127 214 -48 195 162 0 0 chrX 92307044 92307081 -70292849 + (CA)n Simple_repeat Simple_repeat 2 38 0 959 220 131 61 chrX 92307776 92308196 -70291734 - MLT1D LTR MaLR -16 451 3 1354 204 34 108 chrX 92308198 92308643 -70291287 - MLT1D-int LTR MaLR 0 1371 960 1125 335 64 50 chrX 92308856 92309314 -70290616 - MLT1D-int LTR MaLR -488 883 406 1715 163 4 7 chrX 92309314 92309591 -70290339 - AluJo SINE Alu -36 276 1 1125 335 64 50 chrX 92309591 92310003 -70289927 - MLT1D-int LTR MaLR -965 406 1 1375 206 149 44 chrX 92310003 92310460 -70289470 - MLT1D LTR MaLR 0 505 1 201 62 94 0 chrX 92311307 92311339 -70288591 + T-rich Low_complexity Low_complexity 1 35 0 253 274 95 11 chrX 92311389 92311484 -70288446 + L3b LINE CR1 1401 1503 -80 21 0 0 0 chrX 92312110 92312131 -70287799 + AT_rich Low_complexity Low_complexity 1 21 0 299 330 70 10 chrX 92312232 92312332 -70287598 - L2 LINE L2 -65 3207 3102 429 331 8 0 chrX 92312510 92312634 -70287296 - L2 LINE L2 -6 3307 3183 221 349 66 38 chrX 92312752 92312964 -70286966 - L2 LINE L2 -531 2783 2566 2209 83 6 45 chrX 92313009 92313321 -70286609 - AluSx SINE Alu -12 300 1 315 159 0 45 chrX 92313490 92313578 -70286352 + CT-rich Low_complexity Low_complexity 3 86 0 191 284 27 14 chrX 92314569 92314643 -70285287 + L2 LINE L2 1878 1952 -1362 1346 114 0 0 chrX 92314763 92314956 -70284974 - L1PB1 LINE L1 -3 6148 5956 215 312 78 97 chrX 92315578 92315847 -70284083 + L2 LINE L2 2939 3202 -70 749 271 72 62 chrX 92317312 92317530 -70282400 - L2 LINE L2 -2 3311 3088 504 45 0 0 chrX 92317530 92317597 -70282333 + (TG)n Simple_repeat Simple_repeat 1 67 0 749 271 72 62 chrX 92317597 92317699 -70282231 - L2 LINE L2 -225 3088 2988 522 300 92 27 chrX 92317762 92318055 -70281875 - MLT1I LTR MaLR 0 409 98 196 274 55 22 chrX 92318122 92318233 -70281697 + MIR SINE MIR 26 144 -64 297 263 0 26 chrX 92318398 92318474 -70281456 + MIR SINE MIR 51 124 -84 2163 102 0 0 chrX 92318611 92318945 -70280985 + AluSx SINE Alu 1 334 0 493 307 169 45 chrX 92318996 92319523 -70280407 + L2 LINE L2 2325 2916 -398 1028 187 96 16 chrX 92319532 92319836 -70280094 - MER33 DNA MER1_type -1 323 1 366 310 47 51 chrX 92320089 92320344 -70279586 - L1MC4a LINE L1 -1736 6072 5819 181 331 84 49 chrX 92320367 92320509 -70279421 + L2 LINE L2 3118 3264 -8 1833 91 0 12 chrX 92320620 92320862 -70279068 - AluSg/x SINE Alu -4 306 68 781 278 57 0 chrX 92321580 92321825 -70278105 - MIR SINE MIR -1 261 3 686 199 160 0 chrX 92322063 92322219 -70277711 + MER5A DNA MER1_type 4 184 -5 321 289 77 10 chrX 92324823 92324927 -70275003 + L2 LINE L2 3126 3236 -36 249 108 0 0 chrX 92324933 92324970 -70274960 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 771 212 78 26 chrX 92325475 92325706 -70274224 - MER5C DNA MER1_type -16 308 66 1052 266 16 8 chrX 92325952 92326204 -70273726 + MIR SINE MIR 8 261 -1 1801 189 67 3 chrX 92326215 92326558 -70273372 - MLT1A1 LTR MaLR 0 365 1 530 266 31 8 chrX 92326914 92327042 -70272888 - MER5A DNA MER1_type 0 189 59 467 331 86 60 chrX 92327402 92328140 -70271790 + L2 LINE L2 2575 3312 -1 2386 46 0 0 chrX 92329253 92329578 -70270352 - AluY SINE Alu 0 325 1 198 283 0 0 chrX 92330487 92330533 -70269397 - MIR SINE MIR -132 76 31 199 294 0 0 chrX 92331224 92331275 -70268655 + MIR SINE MIR 102 152 -110 215 288 0 17 chrX 92331799 92331858 -70268072 + MER5A DNA MER1_type 20 77 -112 258 257 38 0 chrX 92332070 92332144 -70267786 - MER5A DNA MER1_type -75 114 21 234 0 0 0 chrX 92332296 92332322 -70267608 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 2413 55 3 0 chrX 92332549 92332842 -70267088 - AluY SINE Alu -17 294 1 183 202 36 95 chrX 92332867 92332951 -70266979 + L2 LINE L2 3183 3261 -52 516 251 30 78 chrX 92333443 92333610 -70266320 + MIR SINE MIR 9 167 -95 478 202 70 9 chrX 92333605 92333719 -70266211 - L2 LINE L2 -1 3312 3192 * 2505 118 3 6 chrX 92334137 92334502 -70265428 + THE1B LTR MaLR 1 364 0 185 244 0 0 chrX 92335481 92335522 -70264408 - L3b LINE CR1 -83 1500 1460 232 246 87 0 chrX 92335937 92336006 -70263924 + MIR SINE MIR 124 198 -64 969 169 5 5 chrX 92336328 92336517 -70263413 + MER53 DNA DNA 1 189 0 467 264 75 31 chrX 92336840 92336999 -70262931 - MER5B DNA MER1_type -3 175 10 21 0 0 0 chrX 92338008 92338029 -70261901 + AT_rich Low_complexity Low_complexity 1 21 0 213 114 0 68 chrX 92338350 92338394 -70261536 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 451 308 57 6 chrX 92339531 92339690 -70260240 - L2 LINE L2 -2 3311 3145 198 0 0 0 chrX 92339875 92339897 -70260033 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1567 315 74 58 chrX 92339906 92341070 -70258860 - L2 LINE L2 -433 2881 1699 417 39 0 0 chrX 92341412 92341463 -70258467 + (CA)n Simple_repeat Simple_repeat 1 51 0 2127 139 0 0 chrX 92342044 92342345 -70257585 + AluSx SINE Alu 2 302 -10 1132 38 0 15 chrX 92343776 92343909 -70256021 + AluSg/x SINE Alu 79 209 -103 234 156 0 0 chrX 92344360 92344405 -70255525 + A-rich Low_complexity Low_complexity 1 45 0 507 249 151 44 chrX 92346191 92346416 -70253514 + MIR SINE MIR 14 262 0 2219 91 0 38 chrX 92346647 92346966 -70252964 - AluSx SINE Alu -5 307 1 208 358 82 15 chrX 92346966 92347100 -70252830 - MER5A DNA MER1_type -38 151 9 506 302 29 119 chrX 92348215 92348668 -70251262 + L2 LINE L2 2550 2961 -353 473 301 130 0 chrX 92348726 92348849 -70251081 + L2 LINE L2 3134 3272 0 2119 187 2 2 chrX 92349106 92349560 -70250370 + L1P LINE L1 4685 5138 -1008 248 281 180 0 chrX 92349590 92349679 -70250251 + L2 LINE L2 3207 3311 -2 5248 150 41 18 chrX 92349754 92349902 -70250028 - L1MA9 LINE L1 -3 6309 6166 189 0 0 0 chrX 92349902 92349923 -70250007 + (TG)n Simple_repeat Simple_repeat 2 22 0 5248 150 41 18 chrX 92349923 92350715 -70249215 - L1MA9 LINE L1 -146 6166 5324 2186 106 0 3 chrX 92350715 92351053 -70248877 - AluSg SINE Alu 0 310 1 5248 150 41 18 chrX 92351053 92351390 -70248540 - L1MA9 LINE L1 -988 5324 4996 261 0 0 0 chrX 92351396 92351425 -70248505 + (TA)n Simple_repeat Simple_repeat 1 29 0 3467 219 29 68 chrX 92351447 92352208 -70247722 - L1M4c LINE L1 -2493 4151 3463 1739 177 3 17 chrX 92352208 92352533 -70247397 - AluJo SINE Alu 0 312 1 3467 219 29 68 chrX 92352533 92353107 -70246823 - L1M4c LINE L1 -3181 3463 2868 2371 103 0 0 chrX 92353119 92353431 -70246499 - AluSq SINE Alu -1 312 1 743 143 79 16 chrX 92353431 92353550 -70246380 - FLAM_C SINE Alu -182 130 1 2538 228 35 56 chrX 92353554 92354694 -70245236 - L1M4c LINE L1 -3762 2890 1718 7592 25 0 7 chrX 92354694 92355875 -70244055 + L1PA3 LINE L1 4979 6153 -2 2538 228 35 56 chrX 92355875 92356695 -70243235 - L1M4c LINE L1 -4934 1718 882 1970 257 59 69 chrX 92356693 92357190 -70242740 - L1ME LINE L1 -2831 3551 3050 * 2001 173 34 18 chrX 92357190 92357636 -70242294 - L1MA9 LINE L1 0 6312 5860 1970 257 59 69 chrX 92357636 92357674 -70242256 - L1ME LINE L1 -3332 3050 3013 3737 60 0 0 chrX 92357674 92358140 -70241790 - L1PA5 LINE L1 -7 6147 5682 1970 257 59 69 chrX 92358140 92358930 -70241000 - L1ME LINE L1 -3369 3013 2286 1637 164 15 7 chrX 92358946 92359215 -70240715 - AluJo SINE Alu -41 271 1 2373 87 0 3 chrX 92359222 92359521 -70240409 - AluSq SINE Alu -15 298 1 328 276 39 24 chrX 92359526 92359653 -70240277 - L1ME LINE L1 -4248 2315 2187 440 220 35 51 chrX 92359686 92359902 -70240028 - L1ME LINE L1 -4826 1556 1251 949 224 34 0 chrX 92359932 92360137 -70239793 + MER58C DNA MER1_type 3 214 -1 492 261 0 24 chrX 92360285 92360450 -70239480 - L1ME LINE L1 -5860 512 352 357 315 142 8 chrX 92360732 92360859 -70239071 - L3 LINE CR1 -3 1574 1431 222 105 0 0 chrX 92362123 92362161 -70237769 + (GA)n Simple_repeat Simple_repeat 2 39 0 365 81 16 0 chrX 92362291 92362353 -70237577 + (TG)n Simple_repeat Simple_repeat 1 63 0 275 305 17 17 chrX 92364002 92364176 -70235754 + L1ME LINE L1 5632 5805 -316 189 74 0 0 chrX 92364266 92364293 -70235637 + (TG)n Simple_repeat Simple_repeat 1 27 0 370 193 13 127 chrX 92364415 92364565 -70235365 - MLT1H LTR MaLR -53 496 364 4657 134 13 28 chrX 92364714 92365569 -70234361 - L1MB2 LINE L1 -3 6168 5327 333 47 0 0 chrX 92365573 92365616 -70234314 + (TG)n Simple_repeat Simple_repeat 2 44 0 310 298 44 9 chrX 92368761 92368875 -70231055 - MIR SINE MIR -113 149 32 332 243 39 0 chrX 92369438 92369541 -70230389 + L1ME3A LINE L1 5158 5264 -882 333 47 0 0 chrX 92369554 92369597 -70230333 + (CA)n Simple_repeat Simple_repeat 2 44 0 404 129 14 0 chrX 92369709 92369779 -70230151 + MSTB1 LTR MaLR 362 432 0 362 288 122 10 chrX 92369794 92369999 -70229931 + L1ME3A LINE L1 5724 5951 -219 207 0 0 0 chrX 92370275 92370298 -70229632 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2191 89 0 7 chrX 92370300 92370582 -70229348 - AluSg SINE Alu -30 280 1 2721 119 23 14 chrX 92372045 92372473 -70227457 + MSTB1 LTR MaLR 1 432 0 198 280 296 0 chrX 92373383 92373515 -70226415 - MIR SINE MIR -90 172 2 1197 270 125 4 chrX 92375154 92375610 -70224320 + MLT1J LTR MaLR 1 511 0 2284 89 17 0 chrX 92376959 92377251 -70222679 + AluSx SINE Alu 6 302 -10 400 273 25 56 chrX 92377479 92377640 -70222290 - MIR SINE MIR -7 255 100 378 296 37 9 chrX 92377657 92377765 -70222165 + L2 LINE L2 3187 3297 -16 742 193 122 70 chrX 92378380 92378593 -70221337 - MER58A DNA MER1_type 0 224 1 266 118 20 0 chrX 92380057 92380108 -70219822 - L1MC4 LINE L1 -2 8040 7989 1581 244 68 44 chrX 92380122 92380695 -70219235 - L1MC4 LINE L1 -149 7893 7307 333 217 75 0 chrX 92380705 92380811 -70219119 - L1MD3 LINE L1 -10 7985 7872 2821 181 12 0 chrX 92380973 92381486 -70218444 - L1MB5 LINE L1 -8 6166 5648 4007 188 26 66 chrX 92381595 92383063 -70216867 - L1MB5 LINE L1 -536 5644 4215 1581 221 18 63 chrX 92383072 92383519 -70216411 - L1MC4 LINE L1 -1030 7012 6586 2414 81 3 0 chrX 92383657 92383955 -70215975 + AluSq SINE Alu 1 299 -14 352 261 45 27 chrX 92384411 92384522 -70215408 + MER5B DNA MER1_type 62 174 -4 556 271 152 0 chrX 92384534 92384685 -70215245 - MER5A DNA MER1_type 0 189 16 228 263 202 26 chrX 92385528 92385642 -70214288 + MIR SINE MIR 1 134 -128 235 211 100 67 chrX 92385877 92385967 -70213963 + L2 LINE L2 3162 3254 -18 560 112 0 11 chrX 92386126 92386215 -70213715 - AluS SINE Alu -225 88 1 307 227 52 52 chrX 92386468 92386565 -70213365 - MIR3 SINE MIR -2 206 110 247 222 56 0 chrX 92388205 92388259 -70211671 + L2 LINE L2 3250 3306 -7 239 0 32 0 chrX 92388269 92388300 -70211630 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2084 64 3 39 chrX 92389470 92389752 -70210178 - AluY SINE Alu 0 311 40 2121 151 0 0 chrX 92390430 92390741 -70209189 + AluSq SINE Alu 1 311 -2 201 171 0 0 chrX 92390743 92390778 -70209152 - MER5A DNA MER1_type -52 137 103 21 0 0 0 chrX 92390778 92390799 -70209131 + AT_rich Low_complexity Low_complexity 1 21 0 4812 124 44 7 chrX 92390822 92391660 -70208270 - L1MA8 LINE L1 -6 6285 5417 2328 86 0 46 chrX 92391842 92392168 -70207762 - AluY SINE Alu 0 311 1 524 259 79 80 chrX 92392261 92392698 -70207232 - MLT1F LTR MaLR -5 537 125 185 32 0 65 chrX 92392698 92392729 -70207201 + (GGGTG)n Simple_repeat Simple_repeat 1 29 0 524 259 79 80 chrX 92392729 92392854 -70207076 - MLT1F LTR MaLR -417 125 1 203 363 65 16 chrX 92392956 92393080 -70206850 - L2 LINE L2 -20 3293 3164 1941 120 0 15 chrX 92393671 92393945 -70205985 + AluSx SINE Alu 24 293 -19 420 288 36 0 chrX 92394885 92394996 -70204934 + L2 LINE L2 3199 3313 0 285 342 65 35 chrX 92395015 92395246 -70204684 - L3b LINE CR1 -24 1559 1322 253 97 32 16 chrX 92396157 92396219 -70203711 - L1M4 LINE L1 -799 5347 5285 495 65 0 0 chrX 92396224 92396286 -70203644 - MER5A DNA MER1_type -126 63 2 1018 234 55 51 chrX 92396656 92396912 -70203018 - MIR SINE MIR -3 259 3 324 70 0 0 chrX 92396946 92396989 -70202941 + (GA)n Simple_repeat Simple_repeat 1 43 0 714 301 36 5 chrX 92397316 92397535 -70202395 + MIR SINE MIR 24 249 -13 744 197 37 48 chrX 92397603 92397791 -70202139 + MER5A DNA MER1_type 3 188 -1 711 182 104 19 chrX 92397792 92397946 -70201984 - MIR SINE MIR -46 216 50 22 0 0 0 chrX 92397947 92397969 -70201961 + AT_rich Low_complexity Low_complexity 1 22 0 2429 56 0 0 chrX 92398641 92398943 -70200987 + AluY SINE Alu 1 302 -9 687 121 61 15 chrX 92399433 92399565 -70200365 - L1MB5 LINE L1 0 6174 6037 484 88 12 0 chrX 92399674 92399754 -70200176 + L1M LINE L1 5345 5425 -875 6336 94 15 7 chrX 92399754 92401271 -70198659 - L1PA16 LINE L1 -5 6161 4642 306 0 0 0 chrX 92401271 92401305 -70198625 + (T)n Simple_repeat Simple_repeat 1 34 0 1183 174 17 22 chrX 92401305 92401535 -70198395 + AluSq SINE Alu 1 229 -84 369 247 89 68 chrX 92402676 92402711 -70197219 + MIR3 SINE MIR 44 77 -131 2058 124 14 0 chrX 92402711 92403001 -70196929 + AluSx SINE Alu 1 294 -18 369 247 89 68 chrX 92403001 92403111 -70196819 + MIR3 SINE MIR 77 192 -16 273 163 0 0 chrX 92403526 92403575 -70196355 + (TA)n Simple_repeat Simple_repeat 2 50 0 24 53 0 0 chrX 92403677 92403715 -70196215 + AT_rich Low_complexity Low_complexity 1 38 0 306 164 0 0 chrX 92403719 92403774 -70196156 + (TA)n Simple_repeat Simple_repeat 2 56 0 3501 161 15 26 chrX 92405002 92405340 -70194590 - L1MB5 LINE L1 -8 6166 5839 2529 63 0 0 chrX 92405340 92405640 -70194290 - AluY SINE Alu -11 300 1 3501 161 15 26 chrX 92405640 92405984 -70193946 - L1MB5 LINE L1 -335 5839 5492 454 305 42 39 chrX 92406840 92407099 -70192831 + HAL1 LINE L1 1 260 -2247 1442 123 0 25 chrX 92407126 92407330 -70192600 + AluJb SINE Alu 86 284 -28 2788 251 109 45 chrX 92407399 92408707 -70191223 + HAL1 LINE L1 420 1810 -697 24 0 0 0 chrX 92408791 92408815 -70191115 + AT_rich Low_complexity Low_complexity 1 24 0 522 213 31 0 chrX 92408964 92409091 -70190839 + MER3 DNA MER1_type 38 168 -41 * 1467 183 78 3 chrX 92409078 92409460 -70190470 + MER3 DNA MER1_type 2214 2624 0 312 40 40 0 chrX 92409616 92409666 -70190264 - L1MA4A LINE L1 -6 6297 6246 1038 237 114 13 chrX 92409770 92410087 -70189843 + LTR16A LTR ERVL 102 450 0 180 0 0 0 chrX 92410130 92410150 -70189780 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 6468 80 0 3 chrX 92410150 92411246 -70188684 - L1PA10 LINE L1 -19 6149 5060 457 306 61 61 chrX 92411268 92411558 -70188372 + L1MC/D LINE L1 5067 5359 -787 1723 103 18 129 chrX 92411558 92411898 -70188032 + AluSx SINE Alu 1 302 0 457 306 61 61 chrX 92411898 92411937 -70187993 + L1MC/D LINE L1 5358 5396 -750 382 302 68 16 chrX 92411994 92412246 -70187684 + L1MC/D LINE L1 5467 5731 -2077 246 231 29 58 chrX 92412235 92412339 -70187591 + L1 LINE L1 4919 5019 -1127 * 36 0 0 0 chrX 92412673 92412709 -70187221 + AT_rich Low_complexity Low_complexity 1 36 0 482 333 24 12 chrX 92412786 92412951 -70186979 + MIR3 SINE MIR 21 187 -21 1701 183 0 20 chrX 92413601 92413902 -70186028 + AluJo SINE Alu 1 295 -17 2301 103 0 0 chrX 92413969 92414269 -70185661 - AluSc SINE Alu -9 300 1 787 312 8 20 chrX 92415082 92415332 -70184598 - MIR SINE MIR 0 262 16 459 266 0 0 chrX 92416505 92416614 -70183316 - MLT1A1 LTR MaLR -72 293 185 740 226 133 18 chrX 92416701 92416927 -70183003 - L2 LINE L2 -4 3309 3058 832 209 125 79 chrX 92416929 92417336 -70182594 + MLT1A1 LTR MaLR 1 363 -2 217 313 0 0 chrX 92417339 92417387 -70182543 - L2 LINE L2 -258 3055 3008 * 555 245 43 105 chrX 92417355 92417612 -70182318 + MIR SINE MIR 18 258 -4 845 149 7 7 chrX 92417623 92417766 -70182164 + Tigger2 DNA MER2_type 1 143 -2575 2686 181 64 27 chrX 92417766 92418525 -70181405 - LTR1B LTR ERV1 0 826 1 * 3324 118 55 15 chrX 92418525 92419107 -70180823 + Tigger2 DNA MER2_type 140 744 -1974 1454 156 8 4 chrX 92419173 92419430 -70180500 + Tigger2 DNA MER2_type 2451 2708 -10 182 364 87 47 chrX 92421032 92421285 -70178645 + L2 LINE L2 453 715 -2599 203 355 76 47 chrX 92421288 92421460 -70178470 + MER5B DNA MER1_type 1 177 -1 3070 133 113 44 chrX 92421540 92422219 -70177711 - LTR8A LTR ERV1 -1 726 1 210 341 47 8 chrX 92422227 92422356 -70177574 + L2 LINE L2 825 958 -2356 324 323 69 64 chrX 92422470 92422883 -70177047 + L2 LINE L2 2638 3037 -235 241 283 170 28 chrX 92423508 92423614 -70176316 + L2 LINE L2 3193 3313 0 2273 125 36 26 chrX 92423918 92424390 -70175540 - L1M4 LINE L1 -499 5675 5197 851 247 65 50 chrX 92424486 92424765 -70175165 + MLT1I LTR MaLR 127 409 0 417 330 57 96 chrX 92424871 92424968 -70174962 + L2 LINE L2 2628 2727 -586 1880 125 98 0 chrX 92424968 92425295 -70174635 - MER46B DNA MER2_type -2 234 1 417 330 57 96 chrX 92425295 92425887 -70174043 + L2 LINE L2 2727 3282 -31 188 367 102 0 chrX 92426439 92426537 -70173393 - L2 LINE L2 -7 3265 3158 300 352 0 0 chrX 92427161 92427269 -70172661 - MER58A DNA MER1_type 0 108 1 275 353 8 8 chrX 92427468 92427587 -70172343 - L2 LINE L2 -237 3035 2917 562 281 18 55 chrX 92429255 92429472 -70170458 - MIR SINE MIR -28 234 26 315 253 191 25 chrX 92429484 92429646 -70170284 - MER5A DNA MER1_type 0 189 1 344 316 41 47 chrX 92429780 92429951 -70169979 + L1ME LINE L1 2667 2836 -3310 482 260 26 13 chrX 92431575 92431729 -70168201 + L1ME LINE L1 5537 5692 -429 788 240 61 49 chrX 92431817 92431897 -70168033 - L1ME4a LINE L1 -80 6041 5963 2051 188 59 45 chrX 92431897 92432391 -70167539 - MLT1D LTR MaLR -4 501 1 788 240 61 49 chrX 92432391 92432719 -70167211 - L1ME4a LINE L1 -158 5963 5628 444 324 50 65 chrX 92432819 92433321 -70166609 + L2 LINE L2 2554 3046 -226 284 279 10 0 chrX 92433432 92433536 -70166394 + L1M4 LINE L1 2395 2499 -3647 28 0 0 0 chrX 92433614 92433642 -70166288 + AT_rich Low_complexity Low_complexity 1 28 0 467 287 73 52 chrX 92433720 92434197 -70165733 - L1MEc LINE L1 -4644 1752 1266 1700 225 35 7 chrX 92434466 92434901 -70165029 - L1ME3A LINE L1 -3 6167 5721 517 256 7 0 chrX 92434912 92435049 -70164881 - L1ME3A LINE L1 -548 5622 5485 3858 93 3 71 chrX 92435050 92435463 -70164467 + L1MA2 LINE L1 5392 5741 -563 7073 55 3 1 chrX 92435463 92436507 -70163423 + L1PA7 LINE L1 5104 6149 -5 3858 93 3 71 chrX 92436507 92436781 -70163149 + L1MA2 LINE L1 5741 6032 -272 859 238 40 40 chrX 92437489 92437737 -70162193 - MIR SINE MIR -13 249 2 186 189 0 0 chrX 92437753 92437790 -70162140 + CT-rich Low_complexity Low_complexity 2 38 0 589 257 28 35 chrX 92438133 92438277 -70161653 - L2 LINE L2 0 3313 3171 2091 132 36 33 chrX 92438291 92438654 -70161276 - THE1B LTR MaLR 0 364 1 1407 272 98 24 chrX 92438686 92439019 -70160911 - L2 LINE L2 -341 2973 2589 2381 74 0 7 chrX 92439019 92439317 -70160613 + AluSq SINE Alu 1 296 -17 1407 272 98 24 chrX 92439317 92439483 -70160447 - L2 LINE L2 -725 2589 2437 251 183 226 0 chrX 92439492 92439585 -70160345 - MER69 DNA AcHobo -9 2517 2404 645 160 67 33 chrX 92439596 92439746 -70160184 + MLT1F LTR MaLR 355 509 -33 1057 244 25 17 chrX 92439787 92440263 -70159667 + MLT1F-int LTR MaLR 3 599 -772 254 320 105 17 chrX 92440462 92440634 -70159296 + MLT1F-int LTR MaLR 699 885 -486 2228 24 0 0 chrX 92440650 92440900 -70159030 - AluY SINE Alu -6 305 56 1720 109 49 86 chrX 92441200 92441585 -70158345 + THE1C LTR MaLR 3 373 -2 308 289 59 20 chrX 92441674 92441826 -70158104 + MLT1F-int LTR MaLR 1214 1371 0 2304 251 21 4 chrX 92441826 92442343 -70157587 + MLT1F LTR MaLR 1 526 -16 3213 159 123 14 chrX 92442393 92443219 -70156711 - MER69 DNA AcHobo -117 2409 1489 2648 155 42 76 chrX 92443219 92443748 -70156182 + MLT2B2 LTR ERVL 1 511 -4 3213 159 123 14 chrX 92443748 92443761 -70156169 - MER69 DNA AcHobo -1037 1489 1479 431 258 48 8 chrX 92443810 92443934 -70155996 - MER69 DNA AcHobo -1097 129 1 2822 274 70 46 chrX 92443937 92444053 -70155877 - L2 LINE L2 -873 2441 2329 434 246 79 16 chrX 92444053 92444179 -70155751 + MER94 DNA DNA 1 134 0 2822 274 70 46 chrX 92444179 92444563 -70155367 - L2 LINE L2 -985 2329 1956 916 221 0 22 chrX 92444563 92444744 -70155186 - MER45A DNA AcHobo -1 177 1 2822 274 70 46 chrX 92444744 92444835 -70155095 - L2 LINE L2 -1358 1956 1869 2395 166 0 0 chrX 92444835 92445238 -70154692 + MER57A LTR ERV1 1 403 0 2822 274 70 46 chrX 92445238 92445738 -70154192 - L2 LINE L2 -1445 1869 1321 200 250 139 42 chrX 92445723 92445795 -70154135 + L2 LINE L2 3207 3285 -28 * 225 0 0 0 chrX 92446072 92446097 -70153833 + (T)n Simple_repeat Simple_repeat 1 25 0 185 94 31 0 chrX 92446191 92446223 -70153707 + GA-rich Low_complexity Low_complexity 2 34 0 427 246 88 0 chrX 92446510 92446681 -70153249 - L1ME4a LINE L1 -198 5923 5738 22 0 0 0 chrX 92446947 92446969 -70152961 + AT_rich Low_complexity Low_complexity 1 22 0 2597 209 91 55 chrX 92447619 92448445 -70151485 - MER21B LTR ERV1 0 863 8 196 235 15 88 chrX 92448551 92448619 -70151311 - MIR SINE MIR -116 146 84 406 269 113 0 chrX 92448921 92449062 -70150868 + MIR SINE MIR 90 246 -16 2233 93 3 3 chrX 92449237 92449558 -70150372 + THE1C LTR MaLR 1 321 -54 10865 101 30 12 chrX 92449582 92451134 -70148796 + THE1C-int LTR MaLR 1 1580 0 2690 111 0 13 chrX 92451134 92451514 -70148416 + THE1C LTR MaLR 1 375 0 1997 193 97 63 chrX 92453988 92454689 -70145241 - MER50 LTR ERV1 0 734 10 199 178 0 67 chrX 92454903 92454948 -70144982 - MIR3 SINE MIR -54 154 113 2147 118 0 38 chrX 92454960 92455275 -70144655 - AluSx SINE Alu -9 303 1 247 88 0 0 chrX 92455342 92455376 -70144554 + L2 LINE L2 3270 3303 -10 1363 183 8 16 chrX 92456411 92456662 -70143268 - AluJb SINE Alu -22 290 42 243 294 105 21 chrX 92456895 92457038 -70142892 + MLT1J1 LTR MaLR 286 440 -6 2032 119 90 0 chrX 92457345 92457680 -70142250 + MER47A DNA MER2_type 2 366 0 643 260 101 35 chrX 92458692 92458919 -70141011 + MIR SINE MIR 19 260 -2 768 99 0 0 chrX 92659078 92659189 -69940741 + (TA)n Simple_repeat Simple_repeat 1 111 0 1699 145 16 68 chrX 92659189 92659499 -69940431 - AluSx SINE Alu -18 294 1 319 330 0 27 chrX 92659562 92659674 -69940256 + L3 LINE CR1 1468 1576 -1 292 287 11 11 chrX 92660035 92660129 -69939801 + (TATG)n Simple_repeat Simple_repeat 1 94 0 335 341 133 61 chrX 92661610 92662217 -69937713 + L2 LINE L2 2257 2907 -407 2333 63 7 0 chrX 92662775 92663088 -69936842 + AluSp SINE Alu 1 315 0 1689 157 11 15 chrX 92663120 92663388 -69936542 + AluSx SINE Alu 7 273 -39 264 30 0 0 chrX 92663394 92663427 -69936503 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5401 96 4 2 chrX 92663427 92664411 -69935519 + L1PA8A LINE L1 4600 5649 -482 2115 124 38 12 chrX 92664411 92664757 -69935173 + THE1A LTR MaLR 1 355 0 5401 96 4 2 chrX 92664757 92665242 -69934688 + L1PA8A LINE L1 5649 6131 0 1406 183 34 93 chrX 92665392 92665780 -69934150 - MLT1A1 LTR MaLR 0 365 1 1807 84 0 0 chrX 92665816 92666041 -69933889 + AluSg/x SINE Alu 83 307 -3 1574 147 3 97 chrX 92666238 92666558 -69933372 - AluJb SINE Alu -22 290 1 344 326 43 38 chrX 92667078 92667262 -69932668 + MIR3 SINE MIR 18 202 -6 2056 140 10 3 chrX 92667339 92667653 -69932277 - MER2 DNA MER2_type -3 342 27 2382 53 0 0 chrX 92667658 92667984 -69931946 + AluY SINE Alu 1 326 0 334 320 31 8 chrX 92670206 92670334 -69929596 + MIR SINE MIR 76 206 -56 214 125 77 39 chrX 92670356 92670460 -69929470 + (TTATA)n Simple_repeat Simple_repeat 5 112 0 1766 172 7 14 chrX 92670554 92670850 -69929080 - AluJb SINE Alu -18 294 1 21 57 0 0 chrX 92671034 92671069 -69928861 + AT_rich Low_complexity Low_complexity 1 35 0 1382 200 32 28 chrX 92671069 92671354 -69928576 - AluJb SINE Alu -26 286 1 2511 44 0 0 chrX 92672520 92672814 -69927116 - AluY SINE Alu -17 294 1 210 300 22 78 chrX 92673018 92673108 -69926822 - L3 LINE CR1 -400 1177 1093 477 294 156 36 chrX 92673125 92673299 -69926631 + L1ME4a LINE L1 5683 5835 -286 2025 122 11 0 chrX 92673299 92673604 -69926326 + AluSx SINE Alu 1 308 0 477 294 156 36 chrX 92673604 92673819 -69926111 + L1ME4a LINE L1 5835 6120 -1 3095 278 64 43 chrX 92673867 92674587 -69925343 + L2 LINE L2 1795 2556 -757 1669 195 3 13 chrX 92674587 92674890 -69925040 - AluJb SINE Alu -12 300 1 3095 278 64 43 chrX 92674890 92675355 -69924575 + L2 LINE L2 2556 3009 -304 967 244 20 49 chrX 92675398 92675817 -69924113 + MLT1A2 LTR MaLR 1 372 -2 465 239 6 75 chrX 92675819 92675978 -69923952 + L2 LINE L2 3161 3308 -5 626 277 87 60 chrX 92675978 92676086 -69923844 + L1ME3A LINE L1 5039 5143 -1027 2095 108 10 10 chrX 92676086 92676383 -69923547 + AluSx SINE Alu 1 297 -15 626 277 87 60 chrX 92676383 92676865 -69923065 + L1ME3A LINE L1 5143 5643 -527 785 208 29 102 chrX 92676876 92677121 -69922809 + Charlie1 DNA MER1_type 1 227 -2534 382 240 32 32 chrX 92677128 92677253 -69922677 + Charlie1 DNA MER1_type 2635 2759 -2 534 283 32 58 chrX 92677254 92677551 -69922379 + L1ME3A LINE L1 5649 5937 -225 308 308 8 33 chrX 92677634 92677754 -69922176 + L1ME3A LINE L1 5963 6079 -91 21 95 0 0 chrX 92678343 92678406 -69921524 + AT_rich Low_complexity Low_complexity 1 63 0 185 208 0 19 chrX 92678526 92678579 -69921351 + GA-rich Low_complexity Low_complexity 1 52 0 761 139 90 0 chrX 92678681 92678803 -69921127 + AluSq/x SINE Alu 1 133 -180 2345 89 3 10 chrX 92679405 92679718 -69920212 - AluSp SINE Alu -2 311 1 808 199 37 12 chrX 92679780 92679941 -69919989 - FRAM SINE Alu -8 168 4 275 353 71 24 chrX 92680188 92680358 -69919572 + L2 LINE L2 2913 3090 -182 280 311 46 57 chrX 92681416 92681597 -69918333 - MIR SINE MIR -50 212 38 192 40 0 0 chrX 92681658 92681683 -69918247 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chrX 92681759 92681781 -69918149 + AT_rich Low_complexity Low_complexity 1 22 0 295 283 9 26 chrX 92684933 92685046 -69914884 + L1ME LINE L1 5468 5578 -543 227 333 67 0 chrX 92685970 92686030 -69913900 + L2 LINE L2 3174 3237 -35 1730 151 57 0 chrX 92686130 92686395 -69913535 - AluSg SINE Alu -30 280 1 863 246 36 0 chrX 92686630 92686825 -69913105 + MIR SINE MIR 50 251 -11 28646 131 19 53 chrX 92687931 92694339 -69905591 - L1PA8 LINE L1 0 6172 4 223 161 16 32 chrX 92694867 92694929 -69905001 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 213 121 0 0 chrX 92695012 92695045 -69904885 + (CA)n Simple_repeat Simple_repeat 2 34 0 231 204 0 0 chrX 92695913 92695962 -69903968 + (TA)n Simple_repeat Simple_repeat 2 50 0 351 0 0 0 chrX 92695962 92696001 -69903929 + (TG)n Simple_repeat Simple_repeat 2 40 0 2160 113 3 10 chrX 92697194 92697494 -69902436 + AluSq SINE Alu 16 313 0 378 107 0 0 chrX 92698011 92698067 -69901863 + (TG)n Simple_repeat Simple_repeat 2 57 0 2490 83 0 0 chrX 92698585 92698886 -69901044 - AluSx SINE Alu -11 301 1 21 0 0 0 chrX 92698981 92699002 -69900928 + AT_rich Low_complexity Low_complexity 1 21 0 2447 50 7 10 chrX 92699681 92699980 -69899950 + AluY SINE Alu 1 298 -13 395 273 14 81 chrX 92700093 92700298 -69899632 + MIR SINE MIR 15 206 -56 24 53 0 0 chrX 92700333 92700371 -69899559 + AT_rich Low_complexity Low_complexity 1 38 0 1907 131 3 3 chrX 92700951 92701233 -69898697 + AluJb SINE Alu 1 282 -30 366 360 7 22 chrX 92701330 92701469 -69898461 + MIR3 SINE MIR 23 159 -49 193 288 0 55 chrX 92701684 92701757 -69898173 - MER5C DNA MER1_type -238 86 18 2290 109 0 13 chrX 92701950 92702263 -69897667 - AluSg SINE Alu 0 310 2 296 56 0 0 chrX 92702880 92702916 -69897014 - U2 snRNA snRNA -152 36 1 2267 101 10 0 chrX 92702919 92703227 -69896703 - AluSp SINE Alu -2 311 1 2138 101 45 0 chrX 92703419 92703707 -69896223 - AluSg SINE Alu -9 301 1 22 0 0 0 chrX 92705472 92705494 -69894436 + AT_rich Low_complexity Low_complexity 1 22 0 2053 119 37 0 chrX 92706697 92706991 -69892939 + AluSx SINE Alu 1 305 -7 1573 321 50 61 chrX 92707811 92708748 -69891182 + L3 LINE CR1 450 1376 -201 633 90 0 0 chrX 92708752 92708841 -69891089 + (TA)n Simple_repeat Simple_repeat 2 90 0 672 101 0 10 chrX 92708943 92709065 -69890865 + AluSg/x SINE Alu 185 305 0 484 284 90 63 chrX 92709256 92709555 -69890375 + L2 LINE L2 3006 3312 -1 249 316 76 55 chrX 92710678 92710915 -69889015 + L1MEd LINE L1 110 351 -5768 1526 170 0 61 chrX 92711063 92711392 -69888538 + AluJo SINE Alu 1 309 -3 347 330 46 25 chrX 92711436 92711633 -69888297 + L1MEd LINE L1 599 799 -5320 1766 138 0 35 chrX 92711745 92712027 -69887903 + AluJb SINE Alu 8 279 -33 1074 224 34 4 chrX 92712103 92712340 -69887590 - MIR SINE MIR -17 245 2 256 252 36 27 chrX 92712524 92712635 -69887295 + L1MEd LINE L1 1044 1155 -4964 184 397 0 0 chrX 92712828 92712901 -69887029 + L2 LINE L2 2685 2757 -557 1123 170 38 14 chrX 92712938 92713150 -69886780 + AluSg/x SINE Alu 85 301 -11 302 340 0 10 chrX 92713296 92713396 -69886534 - MIR SINE MIR -65 143 45 234 81 0 0 chrX 92713485 92713522 -69886408 + (A)n Simple_repeat Simple_repeat 1 37 0 266 26 53 0 chrX 92714068 92714106 -69885824 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 1632 238 58 49 chrX 92714108 92714641 -69885289 + LTR26 LTR ERV1 66 603 0 2892 107 159 16 chrX 92716809 92717183 -69882747 - MER41C LTR ERV1 0 554 93 2203 88 7 0 chrX 92717183 92717517 -69882413 - AluSp SINE Alu 0 336 1 2892 107 159 16 chrX 92717517 92717626 -69882304 - MER41C LTR ERV1 -461 93 1 2358 80 3 0 chrX 92719028 92719328 -69880602 - AluSg SINE Alu -9 301 1 26 50 0 0 chrX 92720143 92720183 -69879747 + AT_rich Low_complexity Low_complexity 1 40 0 310 250 0 0 chrX 92720265 92720333 -69879597 + MIR SINE MIR 74 141 -67 2389 80 0 6 chrX 92720936 92721247 -69878683 - AluSq SINE Alu -2 311 3 297 348 27 0 chrX 92721464 92721576 -69878354 - MIR SINE MIR -67 141 27 2071 175 15 35 chrX 92721711 92722110 -69877820 + MSTD LTR MaLR 1 391 -5 863 220 34 0 chrX 92723281 92723490 -69876440 - L1ME3A LINE L1 -14 6156 5941 779 91 25 8 chrX 92724410 92724531 -69875399 + L1MB1 LINE L1 6046 6168 0 2443 60 0 0 chrX 92724799 92725100 -69874830 - AluY SINE Alu -10 301 1 418 154 128 0 chrX 92725875 92725953 -69873977 - 5S rRNA rRNA -32 89 2 422 278 37 0 chrX 92726364 92726472 -69873458 + MIR3 SINE MIR 71 182 -26 188 265 0 20 chrX 92726474 92726523 -69873407 + L3 LINE CR1 1525 1572 -5 28 29 0 0 chrX 92726760 92726795 -69873135 + AT_rich Low_complexity Low_complexity 1 35 0 188 185 19 0 chrX 92727119 92727173 -69872757 + (TA)n Simple_repeat Simple_repeat 1 55 0 270 136 0 0 chrX 92728516 92728560 -69871370 + (A)n Simple_repeat Simple_repeat 1 44 0 25 65 0 0 chrX 92729011 92729057 -69870873 + AT_rich Low_complexity Low_complexity 1 46 0 609 14 0 0 chrX 92729209 92729279 -69870651 + (CTA)n Simple_repeat Simple_repeat 2 71 0 407 330 45 11 chrX 92729305 92729484 -69870446 - MIR SINE MIR -25 237 53 2141 92 0 7 chrX 92729497 92729813 -69870117 + AluSg SINE Alu 1 314 0 239 137 0 20 chrX 92729922 92729973 -69869957 + (TA)n Simple_repeat Simple_repeat 2 51 0 4033 136 19 18 chrX 92729980 92730215 -69869715 - L1MA4A LINE L1 -5 6298 6065 1277 154 108 29 chrX 92730215 92730494 -69869436 - AluJo SINE Alu -11 301 1 4033 136 19 18 chrX 92730494 92730941 -69868989 - L1MA4A LINE L1 -238 6065 5615 285 293 13 13 chrX 92730955 92731112 -69868818 + (TA)n Simple_repeat Simple_repeat 1 157 0 25 51 0 0 chrX 92734779 92734818 -69865112 + AT_rich Low_complexity Low_complexity 1 39 0 42 36 0 0 chrX 92735212 92735268 -69864662 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chrX 92735895 92735923 -69864007 + AT_rich Low_complexity Low_complexity 1 28 0 606 308 84 24 chrX 92736437 92736687 -69863243 - L3b LINE CR1 -167 1416 1152 474 315 139 34 chrX 92736749 92737193 -69862737 + L2 LINE L2 2771 3265 -7 336 48 0 0 chrX 92737254 92737296 -69862634 + (TA)n Simple_repeat Simple_repeat 1 42 0 184 333 65 43 chrX 92737953 92738091 -69861839 + L2 LINE L2 2645 2785 -529 648 304 21 10 chrX 92738095 92738289 -69861641 + MIR SINE MIR 8 203 -59 393 300 0 18 chrX 92738449 92738559 -69861371 + L2 LINE L2 3206 3313 0 304 311 143 41 chrX 92738711 92738907 -69861023 - MIR SINE MIR -6 256 41 2027 95 0 44 chrX 92739050 92739375 -69860555 + AluSx SINE Alu 1 312 0 212 317 129 0 chrX 92739423 92739524 -69860406 + L2 LINE L2 3124 3237 -76 869 148 0 116 chrX 92739887 92740076 -69859854 + MER5A DNA MER1_type 4 170 -19 2223 116 3 0 chrX 92740975 92741285 -69858645 + AluSq SINE Alu 1 311 -2 21 36 0 0 chrX 92742814 92742842 -69857088 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 92743309 92743330 -69856600 + AT_rich Low_complexity Low_complexity 1 21 0 1824 150 7 3 chrX 92743432 92743719 -69856211 - AluJb SINE Alu -4 308 21 446 253 32 0 chrX 92743719 92743814 -69856116 - AluJ/FLAM SINE Alu -211 101 4 4840 174 20 6 chrX 92743816 92744773 -69855157 - L1MB3 LINE L1 -44 6139 5173 289 312 127 13 chrX 92744776 92745013 -69854917 - L1ME LINE L1 -467 5703 5440 1882 131 0 0 chrX 92745097 92745364 -69854566 + AluSg SINE Alu 1 267 -43 789 19 19 9 chrX 92745364 92745472 -69854458 + (GAAAA)n Simple_repeat Simple_repeat 4 112 0 1709 207 149 33 chrX 92745472 92745994 -69853936 + L1ME1 LINE L1 5552 6134 -32 4185 78 4 0 chrX 92746011 92746551 -69853379 + MER41A LTR ERV1 1 542 -12 1713 157 11 3 chrX 92746551 92746837 -69853093 - AluJb SINE Alu -24 288 1 258 350 33 42 chrX 92747967 92748087 -69851843 + L2 LINE L2 3137 3255 -17 2561 55 0 0 chrX 92749062 92749369 -69850561 - AluSg1 SINE Alu -2 307 1 291 244 0 0 chrX 92749478 92749556 -69850374 + CT-rich Low_complexity Low_complexity 1 78 0 200 229 66 16 chrX 92750777 92750838 -69849092 + L3 LINE CR1 1232 1295 -282 270 265 112 29 chrX 92752035 92752153 -69847777 + MIR SINE MIR 37 160 -66 436 307 7 22 chrX 92752512 92752649 -69847281 + MIR SINE MIR 30 164 -98 879 217 11 5 chrX 92753185 92753369 -69846561 + MLT1B LTR MaLR 206 390 0 258 302 16 0 chrX 92753376 92753439 -69846491 + MIR3 SINE MIR 98 161 -47 1140 92 0 46 chrX 92753821 92753994 -69845936 + MER30 DNA MER1_type 1 165 -65 3682 190 87 12 chrX 92754002 92755635 -69844295 + L1PBa LINE L1 6 1906 -4957 182 400 0 12 chrX 92755644 92755729 -69844201 - MIR SINE MIR -81 127 44 2208 108 0 0 chrX 92759003 92759308 -69840622 - AluSx SINE Alu -7 305 1 21 0 0 0 chrX 92759425 92759446 -69840484 + AT_rich Low_complexity Low_complexity 1 21 0 371 131 0 0 chrX 92759452 92759513 -69840417 - L1MB7 LINE L1 -19 6165 6105 21 89 0 0 chrX 92760318 92760374 -69839556 + AT_rich Low_complexity Low_complexity 1 56 0 281 211 26 0 chrX 92761466 92761482 -69838448 + AluYa8 SINE Alu 116 133 -167 2356 86 0 6 chrX 92761482 92761796 -69838134 + AluSx SINE Alu 1 312 0 237 284 0 27 chrX 92761796 92761870 -69838060 + GA-rich Low_complexity Low_complexity 1 72 0 723 291 69 12 chrX 92762559 92762806 -69837124 - MIR SINE MIR 0 262 2 203 284 104 0 chrX 92763266 92763333 -69836597 + MIR SINE MIR 77 150 -112 2420 86 0 0 chrX 92763555 92763859 -69836071 - AluY SINE Alu -6 305 2 230 298 42 85 chrX 92765063 92765134 -69834796 + MIR SINE MIR 12 84 -178 1764 161 0 10 chrX 92765134 92765425 -69834505 - AluJb SINE Alu -24 288 1 230 298 42 85 chrX 92765425 92765609 -69834321 + MIR SINE MIR 84 262 0 405 91 0 0 chrX 92767294 92767349 -69832581 + Alu SINE Alu 1 55 -255 213 121 0 0 chrX 92767367 92767400 -69832530 + (A)n Simple_repeat Simple_repeat 1 33 0 2236 113 0 0 chrX 92767617 92767908 -69832022 - AluSg SINE Alu -17 293 3 1790 157 23 0 chrX 92769406 92769706 -69830224 - AluJb SINE Alu -5 307 1 1398 174 49 19 chrX 92769881 92770146 -69829784 + AluJo SINE Alu 1 273 -39 758 334 70 74 chrX 92770359 92771055 -69828875 - L2 LINE L2 -75 3197 2508 201 394 59 0 chrX 92771072 92771242 -69828688 - L2 LINE L2 -1433 1881 1702 649 286 29 53 chrX 92771488 92771610 -69828320 + MIR SINE MIR 8 123 -139 2322 82 0 0 chrX 92771610 92771903 -69828027 - AluSx SINE Alu -18 294 2 649 286 29 53 chrX 92771903 92772025 -69827905 + MIR SINE MIR 123 246 -16 1664 49 5 0 chrX 92775181 92775384 -69824546 - AluY SINE Alu -14 297 94 774 225 0 7 chrX 92775683 92775834 -69824096 + MLT1A1 LTR MaLR 4 153 -212 1506 63 0 0 chrX 92775837 92776011 -69823919 + AluSp SINE Alu 1 174 -139 1551 198 25 8 chrX 92776017 92776376 -69823554 + L1MB4 LINE L1 5815 6179 -1 34 42 0 0 chrX 92779028 92779076 -69820854 + AT_rich Low_complexity Low_complexity 1 48 0 2677 42 0 0 chrX 92779146 92779457 -69820473 + AluY SINE Alu 1 311 0 192 377 0 0 chrX 92779707 92779776 -69820154 - L2 LINE L2 0 3272 3204 275 314 126 36 chrX 92780263 92780652 -69819278 + L2 LINE L2 2166 2589 -725 1402 128 26 35 chrX 92781080 92781307 -69818623 + LTR28 LTR ERV1 1 225 -795 213 121 0 0 chrX 92781321 92781354 -69818576 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 1688 189 13 10 chrX 92781358 92781659 -69818271 - AluJb SINE Alu -10 302 1 308 252 32 32 chrX 92782223 92782346 -69817584 + L1MEd LINE L1 414 536 -5994 361 303 48 3 chrX 92782783 92782992 -69816938 + L1MEd LINE L1 1763 1994 -4551 923 227 60 24 chrX 92783015 92783266 -69816664 + AluJo SINE Alu 29 288 -24 32 0 0 0 chrX 92783266 92783298 -69816632 + AT_rich Low_complexity Low_complexity 1 32 0 834 128 0 8 chrX 92783435 92783560 -69816370 + AluJb SINE Alu 181 304 -8 186 171 0 0 chrX 92783941 92783976 -69815954 - L3b LINE CR1 -288 1295 1261 324 0 0 0 chrX 92784227 92784263 -69815667 + (A)n Simple_repeat Simple_repeat 1 36 0 2337 82 0 3 chrX 92784534 92784837 -69815093 + AluY SINE Alu 1 302 -9 221 258 152 66 chrX 92786888 92787039 -69812891 - MIR SINE MIR -50 212 49 216 337 53 63 chrX 92787773 92787868 -69812062 + MIR3 SINE MIR 108 201 -7 2370 138 83 19 chrX 92787891 92788363 -69811567 - L1MA8 LINE L1 -5 6286 5785 1969 110 29 0 chrX 92788845 92789146 -69810784 + AluSx SINE Alu 1 309 0 565 299 98 15 chrX 92790194 92790398 -69809532 - MIR SINE MIR -11 251 31 871 194 26 62 chrX 92790879 92791106 -69808824 + MER20 DNA MER1_type 1 219 0 236 234 47 0 chrX 92791319 92791383 -69808547 + (TTATA)n Simple_repeat Simple_repeat 1 67 0 2022 112 0 40 chrX 92791901 92792224 -69807706 - AluSx SINE Alu 0 311 1 2267 46 64 0 chrX 92792438 92792720 -69807210 - AluY SINE Alu -11 300 1 2365 80 3 3 chrX 92792722 92793024 -69806906 - AluSq SINE Alu -11 302 1 403 354 101 13 chrX 92793728 92793886 -69806044 + L3b LINE CR1 1376 1547 -36 515 192 6 26 chrX 92794261 92794417 -69805513 + GA-rich Low_complexity Low_complexity 4 156 0 185 0 40 0 chrX 92794429 92794454 -69805476 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 92795116 92795139 -69804791 + AT_rich Low_complexity Low_complexity 1 23 0 1636 192 44 0 chrX 92795823 92796208 -69803722 - Charlie4a DNA MER1_type -90 418 17 21 82 0 0 chrX 92796767 92796816 -69803114 + AT_rich Low_complexity Low_complexity 1 49 0 1996 121 0 7 chrX 92797997 92798312 -69801618 - AluSc SINE Alu 0 313 1 181 356 34 0 chrX 92798548 92798607 -69801323 - MIR SINE MIR -58 150 90 607 179 137 90 chrX 92798627 92798839 -69801091 + MIR SINE MIR 31 252 -10 299 336 22 29 chrX 92798906 92799043 -69800887 + MIR SINE MIR 86 221 -41 212 311 33 0 chrX 92799077 92799138 -69800792 - MIR SINE MIR -172 90 28 2308 92 10 0 chrX 92800130 92800436 -69799494 - AluSq SINE Alu -3 310 2 22 35 0 0 chrX 92803170 92803199 -69796731 + AT_rich Low_complexity Low_complexity 1 29 0 247 282 115 0 chrX 92804909 92804987 -69794943 - L2 LINE L2 0 3272 3186 2175 82 3 3 chrX 92805322 92805604 -69794326 + AluSq SINE Alu 24 305 -8 258 294 87 0 chrX 92806261 92806353 -69793577 - MIR SINE MIR -75 187 88 715 293 104 29 chrX 92806353 92806902 -69793028 + L1ME3A LINE L1 5365 5954 -216 7006 127 56 4 chrX 92808039 92809199 -69790731 - Tigger3b DNA MER2_type -10 1221 2 253 241 56 65 chrX 92810439 92810515 -69789415 + MIR SINE MIR 150 226 -36 1070 239 9 0 chrX 92810515 92810733 -69789197 - MER58A DNA MER1_type -4 220 1 253 241 56 65 chrX 92810733 92810764 -69789166 + MIR SINE MIR 226 256 -6 21 0 0 0 chrX 92811067 92811088 -69788842 + AT_rich Low_complexity Low_complexity 1 21 0 2272 103 3 3 chrX 92811501 92811811 -69788119 - AluSq SINE Alu -3 310 1 299 182 27 109 chrX 92812086 92812196 -69787734 + MER5B DNA MER1_type 72 172 -6 2286 94 0 23 chrX 92812726 92813035 -69786895 - AluSg SINE Alu -8 302 1 224 233 0 0 chrX 92813547 92813590 -69786340 + (TG)n Simple_repeat Simple_repeat 2 44 0 2245 150 20 54 chrX 92814662 92815110 -69784820 + Tigger2a DNA MER2_type 1 433 -1 220 393 0 0 chrX 92815501 92815590 -69784340 + L2 LINE L2 2970 3058 -214 231 326 92 43 chrX 92815920 92816245 -69783685 - L2 LINE L2 -1211 2103 1763 255 306 152 12 chrX 92817548 92817706 -69782224 - MIR SINE MIR -67 141 16 318 343 126 21 chrX 92818734 92819122 -69780808 + L2 LINE L2 1990 2418 -896 571 147 164 26 chrX 92819346 92819462 -69780468 + FLAM_C SINE Alu 2 133 0 294 29 0 0 chrX 92819517 92819552 -69780378 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 463 330 91 86 chrX 92819880 92820274 -69779656 + L2 LINE L2 2869 3264 -8 808 300 85 55 chrX 92821132 92821782 -69778148 + L1MEd LINE L1 4 672 -5447 203 330 43 43 chrX 92822484 92822599 -69777331 + L2 LINE L2 3199 3313 0 195 191 21 43 chrX 92824646 92824693 -69775237 + L2 LINE L2 3251 3296 -17 32 26 0 0 chrX 92825327 92825366 -69774564 + AT_rich Low_complexity Low_complexity 1 39 0 1544 259 177 32 chrX 92825522 92826295 -69773635 + L1MC4 LINE L1 6743 7627 -415 269 312 11 11 chrX 92826296 92826389 -69773541 + GA-rich Low_complexity Low_complexity 3 95 0 265 158 24 98 chrX 92826410 92826492 -69773438 + L1MC4 LINE L1 7966 8041 -1 251 317 49 0 chrX 92826770 92826852 -69773078 - MIR3 SINE MIR -6 202 117 243 0 0 0 chrX 92826992 92827019 -69772911 + (A)n Simple_repeat Simple_repeat 1 27 0 34 0 0 0 chrX 92827074 92827108 -69772822 + AT_rich Low_complexity Low_complexity 1 34 0 2243 299 162 36 chrX 92827375 92828405 -69771525 + L2 LINE L2 546 1445 -1869 1950 120 16 26 chrX 92828405 92828713 -69771217 + AluSx SINE Alu 1 305 -7 2243 299 162 36 chrX 92828713 92829464 -69770466 + L2 LINE L2 1445 2552 -762 1338 288 111 30 chrX 92829472 92830128 -69769802 - L2 LINE L2 -1227 2087 1379 423 308 151 0 chrX 92832416 92832588 -69767342 - MIR SINE MIR -50 212 15 1053 173 42 8 chrX 92833518 92833755 -69766175 + L1MC2 LINE L1 6087 6331 -13 189 74 0 0 chrX 92833817 92833844 -69766086 + (TTA)n Simple_repeat Simple_repeat 1 27 0 201 315 96 0 chrX 92834653 92834726 -69765204 + MIR3 SINE MIR 111 190 -18 21 36 0 0 chrX 92835253 92835281 -69764649 + AT_rich Low_complexity Low_complexity 1 28 0 404 286 95 41 chrX 92835311 92835711 -69764219 + L1ME4a LINE L1 5317 5634 -487 1306 122 10 7 chrX 92835714 92835940 -69763990 + L1PB3 LINE L1 5270 5491 -663 581 95 0 0 chrX 92835940 92836024 -69763906 + AluSg/x SINE Alu 211 294 -15 4065 144 10 10 chrX 92836024 92836702 -69763228 + L1PB3 LINE L1 5476 6153 -1 265 236 138 16 chrX 92836709 92836832 -69763098 + L1ME4a LINE L1 5770 5907 -214 483 330 5 39 chrX 92837463 92837666 -69762264 + MIR SINE MIR 51 246 -16 25 0 0 0 chrX 92838271 92838296 -69761634 + AT_rich Low_complexity Low_complexity 1 25 0 1287 171 0 0 chrX 92838628 92838833 -69761097 - AluJo SINE Alu -105 207 3 531 318 42 95 chrX 92842267 92842974 -69756956 + L2 LINE L2 2598 3262 -10 880 188 90 16 chrX 92844663 92844908 -69755022 + L1MB7 LINE L1 4695 4957 -1189 3843 169 61 26 chrX 92844909 92845154 -69754776 + L1MB7 LINE L1 5022 5257 -927 1833 139 0 7 chrX 92845154 92845428 -69754502 + AluJb SINE Alu 41 312 0 3843 169 61 26 chrX 92845428 92846139 -69753791 + L1MB7 LINE L1 5257 6036 -148 249 57 0 0 chrX 92848868 92848903 -69751027 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2363 45 0 3 chrX 92848905 92849192 -69750738 - AluY SINE Alu -25 286 1 2122 116 3 0 chrX 92849199 92849493 -69750437 - AluSx SINE Alu -17 295 1 946 248 43 13 chrX 92850966 92851200 -69748730 + MIR SINE MIR 22 262 0 1779 167 18 0 chrX 92851513 92851789 -69748141 - AluJo SINE Alu -30 282 2 22 35 0 0 chrX 92851842 92851871 -69748059 + AT_rich Low_complexity Low_complexity 1 29 0 427 263 56 12 chrX 92852311 92852473 -69747457 - MIR SINE MIR -62 146 28 213 386 53 9 chrX 92852631 92852745 -69747185 + L2 LINE L2 3147 3265 -7 30 69 0 0 chrX 92852888 92852946 -69746984 + AT_rich Low_complexity Low_complexity 1 58 0 1750 156 3 3 chrX 92853074 92853363 -69746567 + AluJb SINE Alu 11 299 -13 2773 181 49 6 chrX 92853642 92854168 -69745762 + MER44D DNA MER2_type 2 605 0 210 231 0 0 chrX 92854228 92854267 -69745663 + (CA)n Simple_repeat Simple_repeat 2 40 0 2860 161 139 27 chrX 92855281 92855950 -69743980 + L1MC2 LINE L1 5592 6335 -9 608 81 0 0 chrX 92858755 92858842 -69741088 - AluSg/x SINE Alu -11 299 213 21 36 0 0 chrX 92859487 92859515 -69740415 + AT_rich Low_complexity Low_complexity 1 28 0 668 269 74 16 chrX 92859652 92859894 -69740036 - MIR SINE MIR 0 262 7 713 289 43 21 chrX 92862080 92862315 -69737615 + MIR SINE MIR 22 261 -1 261 310 60 99 chrX 92862571 92862642 -69737288 + L2 LINE L2 2932 3004 -268 2102 124 0 13 chrX 92862642 92862956 -69736974 - AluSx SINE Alu -2 310 1 261 310 60 99 chrX 92862956 92863236 -69736694 + L2 LINE L2 3004 3269 -3 21011 187 67 20 chrX 92863994 92866500 -69733430 + L1MA3 LINE L1 13 2398 -5326 2505 84 0 0 chrX 92866500 92866811 -69733119 + AluY SINE Alu 1 311 0 21011 187 67 20 chrX 92866811 92868727 -69731203 + L1MA3 LINE L1 2398 4221 -3503 2370 74 0 3 chrX 92868727 92869023 -69730907 + AluY SINE Alu 5 299 -12 21011 187 67 20 chrX 92869023 92871913 -69728017 + L1MA3 LINE L1 4221 7723 -1 195 42 0 0 chrX 92872250 92872274 -69727656 + (TA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chrX 92872798 92872821 -69727109 + AT_rich Low_complexity Low_complexity 1 23 0 2134 96 0 11 chrX 92872888 92873197 -69726733 - AluSg SINE Alu 0 308 3 288 0 0 0 chrX 92873909 92873941 -69725989 + (TG)n Simple_repeat Simple_repeat 2 33 0 567 218 0 0 chrX 92873956 92874057 -69725873 - FLAM_A SINE Alu -27 115 15 2527 121 3 6 chrX 92874470 92874835 -69725095 - THE1B LTR MaLR 0 364 1 2198 69 52 0 chrX 92875041 92875329 -69724601 - AluY SINE Alu -8 303 1 210 314 93 0 chrX 92875331 92875429 -69724501 + MIR SINE MIR 54 160 -48 742 283 78 5 chrX 92875623 92875828 -69724102 - MIR SINE MIR -27 235 16 21 0 0 0 chrX 92878965 92878986 -69720944 + AT_rich Low_complexity Low_complexity 1 21 0 889 335 94 55 chrX 92879259 92879607 -69720323 + L2 LINE L2 1831 2164 -1150 2340 113 13 26 chrX 92879607 92879987 -69719943 + THE1C LTR MaLR 1 375 0 889 335 94 55 chrX 92879987 92880628 -69719302 + L2 LINE L2 2164 2859 -455 1968 142 152 8 chrX 92880857 92881231 -69718699 + MSTA LTR MaLR 1 428 0 21 57 0 0 chrX 92882987 92883022 -69716908 + AT_rich Low_complexity Low_complexity 1 35 0 812 249 0 52 chrX 92883032 92883144 -69716786 + MIR SINE MIR 40 137 -125 2271 100 0 10 chrX 92883144 92883443 -69716487 + AluSp SINE Alu 1 296 -17 812 249 0 52 chrX 92883443 92883543 -69716387 + MIR SINE MIR 137 241 -21 564 152 0 9 chrX 92883875 92883980 -69715950 + L1MA4 LINE L1 6196 6299 -1 477 358 67 0 chrX 92884114 92884279 -69715651 - MER91A DNA MER1_type -2 194 19 206 313 10 52 chrX 92886082 92886178 -69713752 + L2 LINE L2 2436 2527 -787 335 335 89 37 chrX 92886200 92886469 -69713461 + L2 LINE L2 3014 3296 -17 240 250 36 0 chrX 92887169 92887225 -69712705 + L2 LINE L2 3256 3313 0 468 331 29 47 chrX 92889512 92889729 -69710201 + MIR SINE MIR 38 249 -13 278 300 0 0 chrX 92891165 92891225 -69708705 + tRNA-Ile-ATT tRNA tRNA 1 60 -17 418 311 7 0 chrX 92892905 92893040 -69706890 + MIR SINE MIR 117 252 -10 1715 166 3 42 chrX 92893375 92893683 -69706247 - AluJb SINE Alu -16 296 1 204 154 26 0 chrX 92893844 92893883 -69706047 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 2016 226 87 68 chrX 92893916 92894667 -69705263 + LTR1B LTR ERV1 1 765 -61 227 363 80 9 chrX 92894869 92894982 -69704948 - L2 LINE L2 -36 3236 3116 203 293 0 0 chrX 92895245 92895303 -69704627 - L2 LINE L2 -659 2655 2598 1115 228 95 120 chrX 92895340 92895888 -69704042 + MLT1E LTR MaLR 1 580 -8 37 0 0 0 chrX 92895888 92895925 -69704005 + AT_rich Low_complexity Low_complexity 1 37 0 213 39 0 0 chrX 92896187 92896213 -69703717 + (TAA)n Simple_repeat Simple_repeat 1 26 0 2232 123 0 0 chrX 92896578 92896880 -69703050 + AluSx SINE Alu 1 302 -10 463 307 164 0 chrX 92897502 92897727 -69702203 + MIR SINE MIR 1 262 0 758 171 0 0 chrX 92898140 92898257 -69701673 + AluJb SINE Alu 1 117 -195 701 73 0 0 chrX 92898252 92898348 -69701582 - AluY SINE Alu -8 303 208 * 1070 174 0 6 chrX 92898348 92898520 -69701410 + AluJb SINE Alu 100 270 -42 393 75 0 0 chrX 92898527 92898580 -69701350 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1878 199 8 0 chrX 92898605 92898967 -69700963 + MLT1A1 LTR MaLR 1 365 0 902 229 52 58 chrX 92900497 92900567 -69699363 + MER2 DNA MER2_type 2 71 -273 2517 65 3 0 chrX 92900567 92900873 -69699057 + AluSp SINE Alu 1 307 -6 902 229 52 58 chrX 92900873 92901053 -69698877 + MER2 DNA MER2_type 71 252 -92 1711 181 34 10 chrX 92901053 92901345 -69698585 - AluJb SINE Alu -12 300 2 902 229 52 58 chrX 92901345 92901438 -69698492 + MER2 DNA MER2_type 252 344 0 21 36 0 0 chrX 92902722 92902750 -69697180 + AT_rich Low_complexity Low_complexity 1 28 0 280 277 0 0 chrX 92903276 92903341 -69696589 + L2 LINE L2 2992 3056 -216 185 362 184 7 chrX 92903596 92903900 -69696030 - L2 LINE L2 -597 2717 2360 820 285 36 0 chrX 92903943 92904192 -69695738 + MIR SINE MIR 5 262 0 248 273 30 0 chrX 92904314 92904380 -69695550 + (TATG)n Simple_repeat Simple_repeat 3 70 0 359 313 80 20 chrX 92905566 92905716 -69694214 + MIR SINE MIR 27 185 -77 1754 129 20 8 chrX 92906023 92906316 -69693614 + AluSx SINE Alu 24 319 0 229 380 65 0 chrX 92906708 92906816 -69693114 + L2 LINE L2 3138 3252 -20 22 35 0 0 chrX 92906869 92906898 -69693032 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chrX 92906945 92906976 -69692954 + AT_rich Low_complexity Low_complexity 1 31 0 369 75 0 0 chrX 92907839 92907892 -69692038 + (CA)n Simple_repeat Simple_repeat 2 54 0 320 244 87 35 chrX 92907919 92908034 -69691896 - MIR SINE MIR -41 221 101 306 321 9 18 chrX 92908117 92908226 -69691704 + MIR3 SINE MIR 101 208 0 9360 190 20 22 chrX 92908339 92908932 -69690998 + L1PA16 LINE L1 2915 3508 -2658 234 0 0 0 chrX 92908932 92908958 -69690972 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9360 190 20 22 chrX 92908958 92910790 -69689140 + L1PA16 LINE L1 3508 5342 -824 2270 104 0 0 chrX 92910790 92911110 -69688820 + AluSq SINE Alu 1 313 0 9360 190 20 22 chrX 92911110 92911592 -69688338 + L1PA16 LINE L1 5342 5828 -338 2242 98 10 0 chrX 92911592 92911874 -69688056 + AluSq SINE Alu 1 288 -25 375 78 0 0 chrX 92911874 92911925 -69688005 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 2242 98 10 0 chrX 92911925 92911939 -69687991 + AluSq SINE Alu 288 300 -13 9360 190 20 22 chrX 92911939 92912269 -69687661 + L1PA16 LINE L1 5828 6157 -9 503 330 108 19 chrX 92912391 92912761 -69687169 + L1MC4 LINE L1 5495 5897 -1911 21 0 0 0 chrX 92914076 92914097 -69685833 + AT_rich Low_complexity Low_complexity 1 21 0 750 228 93 33 chrX 92914622 92914837 -69685093 - MIR SINE MIR -23 239 12 2645 218 37 14 chrX 92915502 92916127 -69683803 + L1MA4A LINE L1 1 639 -6570 2586 164 30 13 chrX 92916124 92916795 -69683135 + L1MA4A LINE L1 2776 3465 -3743 * 241 156 0 0 chrX 92916786 92916850 -69683080 + L1MC4 LINE L1 6640 6703 -1339 * 317 314 0 0 chrX 92916850 92916936 -69682994 - L1MC4 LINE L1 -1343 6699 6614 * 345 192 128 0 chrX 92916859 92916937 -69682993 + L1MC4 LINE L1 6615 6702 -1340 966 116 0 0 chrX 92917037 92917184 -69682746 + (TA)n Simple_repeat Simple_repeat 2 148 0 9226 192 33 22 chrX 92917185 92920736 -69679194 + L1MA4A LINE L1 3471 7086 -279 7881 123 9 4 chrX 92920837 92921967 -69677963 + THE1C-int LTR MaLR 446 1580 0 2086 124 68 8 chrX 92921967 92922321 -69677609 + THE1C LTR MaLR 1 375 0 357 238 0 119 chrX 92922605 92922748 -69677182 - MIR SINE MIR -56 206 81 1448 197 29 0 chrX 92924270 92924544 -69675386 - AluJo SINE Alu -30 282 1 2199 74 7 3 chrX 92924620 92924931 -69674999 - AluSq SINE Alu 0 312 1 23 33 0 0 chrX 92925201 92925231 -69674699 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chrX 92925516 92925559 -69674371 + AT_rich Low_complexity Low_complexity 1 43 0 392 145 13 40 chrX 92925768 92925844 -69674086 + FRAM/FAM SINE Alu 14 87 -79 195 231 194 56 chrX 92925909 92926017 -69673913 - L2 LINE L2 -44 3228 3106 474 229 65 0 chrX 92926242 92926395 -69673535 + MER103 DNA DNA 2 164 -2 206 143 0 0 chrX 92927446 92927481 -69672449 - L2 LINE L2 -6 3307 3273 2215 80 0 52 chrX 92927499 92927823 -69672107 - AluY SINE Alu -4 307 1 22 0 0 0 chrX 92928649 92928671 -69671259 + AT_rich Low_complexity Low_complexity 1 22 0 2155 102 3 3 chrX 92928683 92928968 -69670962 - AluSx SINE Alu -27 285 1 490 278 98 39 chrX 92929431 92929686 -69670244 - MARNA DNA Mariner -80 506 237 200 208 104 21 chrX 92929802 92929850 -69670080 + L2 LINE L2 1363 1414 -1900 631 312 11 21 chrX 92930092 92930278 -69669652 - MIR3 SINE MIR 0 208 25 23 33 0 0 chrX 92931860 92931890 -69668040 + AT_rich Low_complexity Low_complexity 1 30 0 1655 220 39 68 chrX 92932247 92932807 -69667123 + L1ME1 LINE L1 5618 6161 -5 180 0 0 0 chrX 92932811 92932831 -69667099 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 305 311 113 26 chrX 92932833 92932984 -69666946 - L2 LINE L2 -445 2869 2706 292 272 3 0 chrX 92933208 92933287 -69666643 - MIR SINE MIR -66 142 70 787 221 153 13 chrX 92933729 92934036 -69665894 + L1ME4a LINE L1 5547 5896 -225 235 376 98 26 chrX 92934272 92934538 -69665392 + L3b LINE CR1 1291 1575 -8 2563 20 3 0 chrX 92937200 92937494 -69662436 + AluY SINE Alu 1 295 -16 347 300 0 0 chrX 92937651 92937741 -69662189 - L1MC4 LINE L1 -1339 6703 6614 200 350 153 30 chrX 92938932 92939135 -69660795 - L2 LINE L2 -2 3270 3043 21 36 0 0 chrX 92941599 92941627 -69658303 + AT_rich Low_complexity Low_complexity 1 28 0 855 190 87 15 chrX 92941643 92941838 -69658092 - MER6B DNA MER2_type -1 209 1 218 213 0 0 chrX 92941838 92941885 -69658045 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 29 0 0 chrX 92942601 92942635 -69657295 + AT_rich Low_complexity Low_complexity 1 34 0 2054 90 0 47 chrX 92943247 92943547 -69656383 + AluSc SINE Alu 19 304 -5 308 253 44 33 chrX 92943550 92943641 -69656289 - L1MC4 LINE L1 -1337 6705 6614 1151 164 11 0 chrX 92943643 92943896 -69656034 + AluJb SINE Alu 127 381 0 1580 158 22 9 chrX 92944188 92944504 -69655426 + L1MA4 LINE L1 5977 6296 -4 28 29 0 0 chrX 92944504 92944539 -69655391 + AT_rich Low_complexity Low_complexity 1 35 0 189 107 0 0 chrX 92945478 92945506 -69654424 + (CA)n Simple_repeat Simple_repeat 1 28 0 557 291 31 53 chrX 92946731 92946968 -69652962 + MIR SINE MIR 19 251 -11 1148 125 14 19 chrX 92947826 92948034 -69651896 - L1MA8 LINE L1 -53 6238 6032 496 285 12 42 chrX 92951409 92951574 -69648356 - MIR SINE MIR -26 236 77 840 199 118 0 chrX 92952045 92952231 -69647699 - MER3 DNA MER1_type 0 209 2 180 0 0 0 chrX 92952420 92952440 -69647490 + (A)n Simple_repeat Simple_repeat 1 20 0 513 331 28 17 chrX 92952462 92952643 -69647287 - MIR3 SINE MIR -9 199 17 21 0 0 0 chrX 92953316 92953337 -69646593 + AT_rich Low_complexity Low_complexity 1 21 0 2033 122 189 0 chrX 92954774 92955134 -69644796 + MSTA LTR MaLR 1 428 0 477 282 69 8 chrX 92956715 92956846 -69643084 - MIR3 SINE MIR -68 140 2 613 204 132 7 chrX 92958464 92958616 -69641314 + L1PA10 LINE L1 5997 6167 -1 21 71 0 0 chrX 92958961 92959003 -69640927 + AT_rich Low_complexity Low_complexity 1 42 0 292 346 67 54 chrX 92959040 92959355 -69640575 + L2 LINE L2 2185 2503 -811 * 977 275 119 38 chrX 92959353 92959797 -69640133 - L2 LINE L2 0 3313 2834 23 0 0 0 chrX 92960565 92960588 -69639342 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chrX 92961068 92961105 -69638825 + AT_rich Low_complexity Low_complexity 1 37 0 918 210 22 0 chrX 92962019 92962200 -69637730 + MER5A DNA MER1_type 5 189 0 2404 59 0 3 chrX 92962344 92962651 -69637279 + AluY SINE Alu 1 306 -5 2640 203 127 6 chrX 92962985 92963617 -69636313 - L1ME1 LINE L1 -3 6163 5456 401 302 24 24 chrX 92963623 92963749 -69636181 - MIR SINE MIR -123 139 14 591 332 18 14 chrX 92964540 92964757 -69635173 + MIR SINE MIR 6 223 -39 24 0 0 0 chrX 92964898 92964922 -69635008 + AT_rich Low_complexity Low_complexity 1 24 0 412 217 22 22 chrX 92964969 92965061 -69634869 + FRAM/FAM SINE Alu 1 84 -92 2323 61 7 0 chrX 92965101 92965395 -69634535 - AluY SINE Alu -15 296 1 22 0 0 0 chrX 92968436 92968458 -69631472 + AT_rich Low_complexity Low_complexity 1 22 0 868 132 24 12 chrX 92968565 92968732 -69631198 - L1MA8 LINE L1 0 6291 6123 9171 200 25 26 chrX 92968734 92969409 -69630521 + L1 LINE L1 2421 3095 -3051 2150 96 33 10 chrX 92969409 92969710 -69630220 + AluSx SINE Alu 1 308 -4 9171 200 25 26 chrX 92969710 92971185 -69628745 + L1 LINE L1 3095 4568 -1578 13203 25 0 1 chrX 92971186 92973517 -69626413 + L1PA3 LINE L1 3822 6152 -3 31 26 0 0 chrX 92973517 92973555 -69626375 + AT_rich Low_complexity Low_complexity 1 38 0 1009 101 6 25 chrX 92973901 92974060 -69625870 + L1PB2 LINE L1 5989 6144 -7 853 123 0 0 chrX 92974078 92974208 -69625722 - L1MA8 LINE L1 -152 6139 6010 264 348 116 0 chrX 92974753 92974865 -69625065 - MIR SINE MIR -62 146 22 2119 108 0 46 chrX 92975942 92976267 -69623663 + AluSx SINE Alu 3 312 0 26 0 0 0 chrX 92980602 92980628 -69619302 + AT_rich Low_complexity Low_complexity 1 26 0 268 207 215 25 chrX 92980959 92981080 -69618850 - MIR3 SINE MIR -5 203 60 432 113 14 14 chrX 92981093 92981164 -69618766 - MER52A LTR ERV1 0 1755 1685 671 284 172 7 chrX 92981190 92981548 -69618382 + L2 LINE L2 2683 3101 -212 480 269 135 39 chrX 92982329 92982537 -69617393 + MIR SINE MIR 13 240 -22 199 137 20 20 chrX 92982550 92982601 -69617329 + (TA)n Simple_repeat Simple_repeat 1 51 0 348 290 0 0 chrX 92982601 92982694 -69617236 - L1MC4 LINE L1 -1336 6706 6614 293 188 12 0 chrX 92982694 92982774 -69617156 + (TA)n Simple_repeat Simple_repeat 2 82 0 198 240 160 96 chrX 92982802 92982885 -69617045 - L2 LINE L2 -958 2356 2261 2208 102 10 0 chrX 92982885 92983188 -69616742 + AluSq SINE Alu 1 306 -7 198 240 160 96 chrX 92983188 92983229 -69616701 - L2 LINE L2 -1053 2261 2224 416 104 15 0 chrX 92983233 92983300 -69616630 + (CA)n Simple_repeat Simple_repeat 1 68 0 229 209 0 0 chrX 92983309 92983352 -69616578 + MIR SINE MIR 210 252 -10 27 87 0 0 chrX 92984899 92984968 -69614962 + AT_rich Low_complexity Low_complexity 1 69 0 234 62 0 0 chrX 92985768 92985800 -69614130 + (T)n Simple_repeat Simple_repeat 1 32 0 252 154 0 0 chrX 92987233 92987272 -69612658 + tRNA-Thr-ACT tRNA tRNA 2 40 -37 2276 103 3 0 chrX 92987563 92987875 -69612055 + AluSq SINE Alu 1 313 0 1997 134 0 6 chrX 92988254 92988568 -69611362 - AluJb SINE Alu 0 312 1 24 67 0 0 chrX 92988580 92988625 -69611305 + AT_rich Low_complexity Low_complexity 1 45 0 2255 113 0 0 chrX 92988894 92989196 -69610734 + AluSg SINE Alu 1 302 -8 26 0 0 0 chrX 92989222 92989248 -69610682 + AT_rich Low_complexity Low_complexity 1 26 0 1948 121 4 0 chrX 92991214 92991495 -69608435 + AluSx SINE Alu 1 282 -30 626 269 209 24 chrX 92991899 92992230 -69607700 + L2 LINE L2 2922 3313 0 204 97 0 0 chrX 92992230 92992261 -69607669 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 323 325 150 6 chrX 92992787 92992947 -69606983 - MIR3 SINE MIR -10 198 16 45 34 0 0 chrX 92994246 92994305 -69605625 + AT_rich Low_complexity Low_complexity 1 59 0 7350 40 13 0 chrX 92994323 92995468 -69604462 - L1PA5 LINE L1 -3 6151 5002 2087 139 25 3 chrX 92995973 92996326 -69603604 - MER46B DNA MER2_type 0 236 1 1207 190 102 30 chrX 92996999 92997331 -69602599 + Charlie4a DNA MER1_type 1 356 -152 1348 139 71 177 chrX 92997336 92997817 -69602113 - L1MD2 LINE L1 -20 6339 5910 * 6183 99 73 20 chrX 92997802 92998449 -69601481 + L1MA3 LINE L1 5135 5872 -433 2318 100 0 6 chrX 92998449 92998760 -69601170 + AluSx SINE Alu 1 309 -3 6183 99 73 20 chrX 92998760 92999211 -69600719 + L1MA3 LINE L1 5872 6298 -7 1397 207 18 7 chrX 92999212 92999497 -69600433 - L1MD2 LINE L1 -424 5935 5648 697 199 20 0 chrX 92999519 92999665 -69600265 + Charlie4a DNA MER1_type 359 507 -1 2545 49 0 7 chrX 92999748 93000056 -69599874 - AluY SINE Alu -5 306 1 2163 74 0 50 chrX 93000687 93000986 -69598944 + AluY SINE Alu 21 304 -7 245 302 66 38 chrX 93001069 93001175 -69598755 - MIR SINE MIR -108 154 46 558 242 59 43 chrX 93001294 93001480 -69598450 + MIR SINE MIR 73 261 -1 259 330 52 10 chrX 93001543 93001640 -69598290 + L3 LINE CR1 1421 1521 -56 456 51 0 0 chrX 93001642 93001701 -69598229 + (TAG)n Simple_repeat Simple_repeat 1 59 0 1981 80 0 0 chrX 93001710 93001961 -69597969 - AluSg SINE Alu -59 251 1 22 56 0 0 chrX 93003238 93003274 -69596656 + AT_rich Low_complexity Low_complexity 1 36 0 2183 89 0 3 chrX 93003723 93004033 -69595897 + AluSx SINE Alu 1 309 0 322 317 186 32 chrX 93005167 93005388 -69594542 + MIR SINE MIR 2 256 -6 460 269 115 19 chrX 93005409 93005617 -69594313 - MIR SINE MIR 0 262 35 455 327 56 29 chrX 93005614 93005896 -69594034 + L2 LINE L2 2782 3077 -236 * 786 71 102 8 chrX 93005903 93006030 -69593900 - MER85 DNA T2_type 0 139 1 243 310 142 19 chrX 93006299 93006454 -69593476 - MIR SINE MIR -76 186 13 596 299 45 45 chrX 93006851 93007176 -69592754 + L1ME4a LINE L1 5505 5832 -289 1848 150 0 3 chrX 93007176 93007463 -69592467 - AluJb SINE Alu -26 286 1 596 299 45 45 chrX 93007463 93007555 -69592375 + L1ME4a LINE L1 5831 5922 -199 23 54 0 0 chrX 93007791 93007828 -69592102 + AT_rich Low_complexity Low_complexity 1 37 0 227 312 7 21 chrX 93007886 93008027 -69591903 + A-rich Low_complexity Low_complexity 4 142 0 222 293 219 0 chrX 93008709 93008791 -69591139 - L2 LINE L2 -15 3298 3199 205 357 48 0 chrX 93008868 93008952 -69590978 - L2 LINE L2 0 3272 3185 448 360 94 58 chrX 93009017 93009412 -69590518 - L2 LINE L2 -4 3268 2860 836 322 88 12 chrX 93009536 93009943 -69589987 - L2 LINE L2 -502 2812 2375 248 320 23 76 chrX 93009948 93010120 -69589810 - L3 LINE CR1 -198 1379 1217 316 294 149 38 chrX 93010488 93010723 -69589207 - L1ME LINE L1 -303 5818 5558 2198 82 0 0 chrX 93011305 93011632 -69588298 + AluY SINE Alu 4 330 0 32 0 0 0 chrX 93012141 93012173 -69587757 + AT_rich Low_complexity Low_complexity 1 32 0 217 224 0 20 chrX 93013369 93013418 -69586512 - MIR SINE MIR -50 212 165 2164 104 0 7 chrX 93014190 93014488 -69585442 - AluSx SINE Alu -16 296 1 23 0 0 0 chrX 93014647 93014670 -69585260 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrX 93015424 93015448 -69584482 + AT_rich Low_complexity Low_complexity 1 24 0 352 314 57 0 chrX 93015475 93015580 -69584350 + L2 LINE L2 2969 3079 -193 213 151 0 0 chrX 93015636 93015689 -69584241 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 57 0 0 chrX 93015766 93015801 -69584129 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chrX 93016140 93016164 -69583766 + AT_rich Low_complexity Low_complexity 1 24 0 1433 219 0 22 chrX 93016328 93016598 -69583332 + Tigger7 DNA MER2_type 1 264 -469 396 0 0 0 chrX 93016600 93016644 -69583286 + (TA)n Simple_repeat Simple_repeat 2 45 0 195 42 0 0 chrX 93016686 93016710 -69583220 + (GA)n Simple_repeat Simple_repeat 2 25 0 586 136 0 11 chrX 93016710 93016798 -69583132 + Tigger7 DNA MER2_type 2405 2491 0 410 283 50 56 chrX 93018116 93018314 -69581616 + MIR SINE MIR 2 198 -64 1814 163 58 0 chrX 93019493 93019818 -69580112 - MER2 DNA MER2_type 0 344 1 1896 152 0 3 chrX 93019840 93020137 -69579793 + AluSx SINE Alu 1 296 -16 899 232 69 8 chrX 93020694 93020940 -69578990 + MIR SINE MIR 2 262 0 2096 126 0 0 chrX 93021777 93022063 -69577867 + AluSx SINE Alu 1 286 -26 21 0 0 0 chrX 93022116 93022137 -69577793 + AT_rich Low_complexity Low_complexity 1 21 0 1601 195 3 7 chrX 93022902 93023194 -69576736 + AluJo SINE Alu 1 291 -21 28 29 0 0 chrX 93023194 93023229 -69576701 + AT_rich Low_complexity Low_complexity 1 35 0 1263 118 11 0 chrX 93023409 93023595 -69576335 + L1PA15 LINE L1 5954 6141 -24 486 309 45 32 chrX 93023647 93023867 -69576063 - MIR SINE MIR -6 256 34 201 361 160 0 chrX 93023910 93024079 -69575851 - L3 LINE CR1 -140 1437 1242 2268 99 3 3 chrX 93024795 93025099 -69574831 + AluSq SINE Alu 1 304 -9 2018 107 3 72 chrX 93025139 93025458 -69574472 + AluSx SINE Alu 1 297 -15 23 33 0 0 chrX 93026280 93026310 -69573620 + AT_rich Low_complexity Low_complexity 1 30 0 289 276 161 40 chrX 93027089 93027263 -69572667 + MIR SINE MIR 1 195 -67 899 228 117 16 chrX 93027403 93027692 -69572238 + MER61B LTR ERV1 1 396 -28 2241 139 72 8 chrX 93027843 93028245 -69571685 - MSTA LTR MaLR 0 428 1 462 274 111 26 chrX 93028492 93028682 -69571248 + MIR SINE MIR 30 235 -27 2262 83 206 3 chrX 93029119 93029493 -69570437 + LTR7 LTR ERV1 1 450 0 2460 59 0 16 chrX 93030330 93030637 -69569293 + AluY SINE Alu 1 302 -9 1582 153 52 0 chrX 93031011 93031319 -69568611 + MER33 DNA MER1_type 1 324 0 774 277 78 45 chrX 93032817 93033174 -69566756 + MARNA DNA Mariner 18 386 -200 208 345 68 58 chrX 93033176 93033382 -69566548 + MIR SINE MIR 43 250 -12 297 0 0 0 chrX 93033776 93033809 -69566121 + (CA)n Simple_repeat Simple_repeat 2 34 0 468 165 0 0 chrX 93033809 93033900 -69566030 + GA-rich Low_complexity Low_complexity 1 91 0 2860 7 0 0 chrX 93034217 93034524 -69565406 + AluY SINE Alu 2 308 -3 297 0 0 0 chrX 93034524 93034557 -69565373 + (TA)n Simple_repeat Simple_repeat 1 33 0 409 77 0 39 chrX 93035058 93035136 -69564794 + L1PB1 LINE L1 6077 6151 0 1620 145 0 23 chrX 93035169 93035431 -69564499 + AluJb SINE Alu 43 298 -14 263 299 0 13 chrX 93035895 93035972 -69563958 + MIR SINE MIR 176 251 -11 855 186 5 1 chrX 93036886 93037091 -69562839 - MER46A DNA MER2_type 0 236 2 1976 130 7 11 chrX 93037281 93037589 -69562341 + AluSx SINE Alu 1 307 0 36 23 0 0 chrX 93037872 93037915 -69562015 + AT_rich Low_complexity Low_complexity 1 43 0 641 247 56 15 chrX 93039182 93039491 -69560439 + MLT1I LTR MaLR 16 367 -42 269 304 16 8 chrX 93039502 93039627 -69560303 - L1MC/D LINE L1 -1925 5883 5758 635 277 51 47 chrX 93039627 93039880 -69560050 - MIR SINE MIR -7 255 2 840 345 74 3 chrX 93039887 93040223 -69559707 - L2 LINE L2 -114 3199 2840 242 289 73 67 chrX 93040303 93040645 -69559285 - L1MC/D LINE L1 -743 5403 5294 2720 39 0 0 chrX 93040645 93040953 -69558977 - AluY SINE Alu -3 308 1 242 289 73 67 chrX 93040953 93041040 -69558890 - L1MC/D LINE L1 -852 5294 5209 2010 141 0 3 chrX 93041448 93041752 -69558178 + AluSx SINE Alu 1 303 -9 264 59 0 0 chrX 93041781 93041815 -69558115 + (TA)n Simple_repeat Simple_repeat 1 34 0 322 340 29 0 chrX 93042099 93042202 -69557728 - L2 LINE L2 -228 3085 2980 535 213 7 47 chrX 93042628 93042778 -69557152 + MER103 DNA DNA 16 159 -7 439 271 9 9 chrX 93043065 93043172 -69556758 + Charlie1 DNA MER1_type 1 107 -2654 1270 109 0 6 chrX 93043173 93043347 -69556583 + AluSq SINE Alu 1 173 -140 377 119 15 0 chrX 93043348 93043415 -69556515 + AluS SINE Alu 226 293 -7 * 653 176 103 0 chrX 93043410 93043546 -69556384 + Charlie1 DNA MER1_type 95 244 -2517 553 176 38 0 chrX 93043524 93043655 -69556275 + Charlie1 DNA MER1_type 2619 2754 -7 * 214 216 101 144 chrX 93044296 93044357 -69555573 + MIR3 SINE MIR 76 138 -70 769 211 0 0 chrX 93044357 93044490 -69555440 + FLAM_A SINE Alu 1 133 0 214 216 101 144 chrX 93044490 93044567 -69555363 + MIR3 SINE MIR 138 208 0 2217 117 0 0 chrX 93044810 93045108 -69554822 - AluSx SINE Alu -14 298 1 21 36 0 0 chrX 93045253 93045281 -69554649 + AT_rich Low_complexity Low_complexity 1 28 0 204 40 0 0 chrX 93045868 93045893 -69554037 + (A)n Simple_repeat Simple_repeat 1 25 0 2129 121 0 31 chrX 93045987 93046309 -69553621 + AluSx SINE Alu 1 312 0 299 228 20 10 chrX 93047217 93047318 -69552612 + (TTTA)n Simple_repeat Simple_repeat 1 102 0 362 236 45 25 chrX 93047595 93047752 -69552178 - L1ME4a LINE L1 -2 6119 5960 746 294 100 3 chrX 93047871 93048232 -69551698 - L1ME4a LINE L1 -338 5783 5388 1021 322 57 23 chrX 93050116 93050591 -69549339 + L2 LINE L2 2804 3294 -19 1982 170 0 0 chrX 93050749 93051055 -69548875 - AluSx SINE Alu -6 306 1 448 281 0 35 chrX 93051321 93051435 -69548495 + L2 LINE L2 3189 3298 -15 237 108 0 0 chrX 93051437 93051474 -69548456 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 1932 132 32 47 chrX 93052081 93052423 -69547507 + MER1B DNA MER1_type 1 337 0 643 184 66 7 chrX 93052594 93052730 -69547200 + MER3 DNA MER1_type 54 197 -12 309 79 222 0 chrX 93052863 93052926 -69547004 - MADE1 DNA Mariner -2 78 2 292 242 67 33 chrX 93052930 93052966 -69546964 + MER103 DNA DNA 20 53 -113 2356 68 10 3 chrX 93052966 93053273 -69546657 + AluY SINE Alu 3 311 0 292 242 67 33 chrX 93053273 93053356 -69546574 + MER103 DNA DNA 53 143 -23 1266 171 72 78 chrX 93053371 93053717 -69546213 + MLT1A1 LTR MaLR 10 353 -12 6250 94 19 11 chrX 93053864 93054783 -69545147 - L1MA2 LINE L1 0 6304 5379 1772 204 24 8 chrX 93054889 93055272 -69544658 + L1MB1 LINE L1 5631 6019 -149 1831 123 13 23 chrX 93055272 93055573 -69544357 + AluSx SINE Alu 1 298 -14 38554 77 8 7 chrX 93055584 93061724 -69538206 + L1PA6 LINE L1 11 6153 -1 766 215 0 0 chrX 93061732 93061895 -69538035 + L1MB1 LINE L1 5993 6155 -13 351 0 0 0 chrX 93063259 93063298 -69536632 + (T)n Simple_repeat Simple_repeat 1 39 0 1870 166 30 35 chrX 93063573 93063941 -69535989 + MER93b LTR ERV1 1 366 -7 2328 71 0 7 chrX 93064201 93064498 -69535432 + AluY SINE Alu 1 295 -16 2383 103 3 0 chrX 93064566 93064878 -69535052 - AluSp SINE Alu 0 313 1 537 256 60 30 chrX 93065823 93066022 -69533908 + L2 LINE L2 2975 3179 -134 249 283 0 0 chrX 93066022 93066082 -69533848 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 32 43 0 0 chrX 93066466 93066512 -69533418 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chrX 93066646 93066668 -69533262 + AT_rich Low_complexity Low_complexity 1 22 0 204 341 118 44 chrX 93066862 93067219 -69532711 - L2 LINE L2 -909 2405 1999 2148 71 0 4 chrX 93067219 93067485 -69532445 - AluSg SINE Alu -45 265 1 204 341 118 44 chrX 93067485 93067629 -69532301 - L2 LINE L2 -1315 1999 1867 26 30 0 0 chrX 93067898 93067931 -69531999 + AT_rich Low_complexity Low_complexity 1 33 0 2049 167 38 33 chrX 93068031 93068581 -69531349 + MLT2A2 LTR ERVL 1 554 0 484 249 200 10 chrX 93068581 93068786 -69531144 + L1ME3A LINE L1 5562 5805 -365 724 253 126 0 chrX 93068823 93069013 -69530917 + MER58A DNA MER1_type 9 222 -2 915 276 63 9 chrX 93069036 93069355 -69530575 + L1ME3A LINE L1 5825 6160 -10 24 53 0 0 chrX 93069481 93069519 -69530411 + AT_rich Low_complexity Low_complexity 1 38 0 39 38 0 0 chrX 93071342 93071395 -69528535 + AT_rich Low_complexity Low_complexity 1 53 0 2235 92 0 0 chrX 93071411 93071715 -69528215 - AluSg SINE Alu 0 304 1 2349 287 71 35 chrX 93071833 93073133 -69526797 + L1MEc LINE L1 35 1381 -5015 305 279 0 0 chrX 93073133 93073194 -69526736 - MER2 DNA MER2_type 0 345 285 * 488 217 46 23 chrX 93073189 93073320 -69526610 - MER2 DNA MER2_type -101 138 2 352 319 25 6 chrX 93073339 93073486 -69526444 + L1MEc LINE L1 1393 1545 -4851 406 123 68 0 chrX 93073486 93073559 -69526371 + L1PA11 LINE L1 6097 6174 0 838 147 112 18 chrX 93073574 93073744 -69526186 + MSTA LTR MaLR 179 364 -64 2269 110 0 0 chrX 93073744 93074044 -69525886 - AluSx SINE Alu -12 300 1 1508 217 50 76 chrX 93074071 93074769 -69525161 + L1MEc LINE L1 1533 2213 -4183 2115 109 0 0 chrX 93074769 93075096 -69524834 + AluSx SINE Alu 7 333 0 1508 217 50 76 chrX 93075096 93075137 -69524793 + L1MEc LINE L1 2213 2254 -4142 534 149 0 4 chrX 93075137 93075229 -69524701 + MER2 DNA MER2_type 1 89 -150 1478 246 52 38 chrX 93075308 93075918 -69524012 + L1MEc LINE L1 2209 2827 -3388 1139 259 71 40 chrX 93076088 93076536 -69523394 + MLT1C LTR MaLR 6 467 0 248 368 0 9 chrX 93076577 93076691 -69523239 - L1MC/D LINE L1 -2174 5634 5522 188 214 54 18 chrX 93076794 93076850 -69523080 + MIR3 SINE MIR 150 207 -1 298 258 0 65 chrX 93076854 93076925 -69523005 - L2 LINE L2 0 3313 3248 1800 211 17 6 chrX 93076925 93077286 -69522644 + MLT1A1 LTR MaLR 1 365 0 298 258 0 65 chrX 93077286 93077307 -69522623 - L2 LINE L2 -65 3248 3227 1336 179 31 74 chrX 93077435 93077765 -69522165 + MLT1A2 LTR MaLR 4 346 -50 2005 119 0 32 chrX 93077774 93078085 -69521845 + AluSx SINE Alu 1 301 -11 27 29 0 0 chrX 93078355 93078389 -69521541 + AT_rich Low_complexity Low_complexity 1 34 0 550 266 72 19 chrX 93079268 93079490 -69520440 + MIR SINE MIR 14 252 -10 654 157 19 0 chrX 93079713 93079821 -69520109 - FRAM SINE Alu -36 140 31 2504 80 0 3 chrX 93080872 93081186 -69518744 + AluSp SINE Alu 1 313 0 2222 228 32 30 chrX 93081713 93082274 -69517656 + MER68 LTR ERV1 1 562 0 194 331 115 43 chrX 93082415 93082554 -69517376 - L2 LINE L2 -2 3270 3122 2178 103 3 61 chrX 93083233 93083563 -69516367 + AluSx SINE Alu 1 311 -1 861 214 38 81 chrX 93085311 93085466 -69514464 + MLT1A1 LTR MaLR 1 161 -265 2133 76 47 30 chrX 93085466 93085767 -69514163 + AluSq SINE Alu 1 306 -7 861 214 38 81 chrX 93085767 93086003 -69513927 + MLT1A1 LTR MaLR 161 424 -2 375 221 290 28 chrX 93086174 93086319 -69513611 - MIR SINE MIR -72 190 8 189 245 0 41 chrX 93088436 93088485 -69511445 + MIR SINE MIR 206 252 -10 1634 170 3 28 chrX 93088509 93088644 -69511286 + AluJb SINE Alu 1 138 -174 2367 31 0 28 chrX 93088644 93088973 -69510957 + AluY SINE Alu 1 321 0 1634 170 3 28 chrX 93088973 93089125 -69510805 + AluJb SINE Alu 138 282 -30 216 0 0 0 chrX 93089128 93089152 -69510778 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 26 74 0 0 chrX 93089510 93089564 -69510366 + AT_rich Low_complexity Low_complexity 1 54 0 2005 119 3 7 chrX 93090135 93090428 -69509502 + AluSx SINE Alu 1 292 -20 2332 87 0 16 chrX 93090465 93090775 -69509155 + AluSc SINE Alu 5 309 0 2879 232 70 29 chrX 93091991 93092962 -69506968 + L1MC4 LINE L1 7032 8042 0 2834 36 0 0 chrX 93093021 93093358 -69506572 + L1PA4 LINE L1 5816 6152 -3 42 48 0 0 chrX 93094634 93094697 -69505233 + AT_rich Low_complexity Low_complexity 1 63 0 2273 116 0 0 chrX 93094732 93095042 -69504888 + AluSx SINE Alu 1 310 -2 272 277 0 50 chrX 93095444 93095545 -69504385 - MIR SINE MIR -70 138 43 360 43 0 0 chrX 93095850 93095896 -69504034 + (CA)n Simple_repeat Simple_repeat 2 47 0 329 323 148 19 chrX 93096008 93096265 -69503665 + L3b LINE CR1 1176 1465 -118 813 234 114 9 chrX 93096993 93097220 -69502710 + MIR SINE MIR 12 262 0 1301 178 65 114 chrX 93097254 93097366 -69502564 - MLT1B LTR MaLR 0 467 351 1950 148 10 3 chrX 93097366 93097676 -69502254 - AluSx SINE Alu 0 312 1 1301 178 65 114 chrX 93097676 93098025 -69501905 - MLT1B LTR MaLR -116 351 1 235 222 0 0 chrX 93098169 93098223 -69501707 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 1861 131 3 7 chrX 93099194 93099476 -69500454 - AluJb SINE Alu -19 293 13 2291 94 0 0 chrX 93101030 93101327 -69498603 - AluSx SINE Alu -15 297 1 1068 274 139 58 chrX 93101930 93102840 -69497090 + L2 LINE L2 2338 3313 0 192 236 167 28 chrX 93102840 93102912 -69497018 - MIR SINE MIR -135 127 46 479 225 43 80 chrX 93103788 93103926 -69496004 - MIR SINE MIR -105 157 25 245 95 0 24 chrX 93104998 93105040 -69494890 + (TA)n Simple_repeat Simple_repeat 1 41 0 1612 270 108 18 chrX 93105238 93106107 -69493823 + L1M4 LINE L1 2289 3235 -2911 591 263 0 0 chrX 93106614 93106747 -69493183 + FLAM_A SINE Alu 1 133 0 239 181 125 69 chrX 93106752 93106824 -69493106 + MIR3 SINE MIR 133 208 0 1743 181 0 0 chrX 93107067 93107365 -69492565 - AluSx SINE Alu -14 298 1 952 192 6 0 chrX 93107600 93107767 -69492163 - FRAM SINE Alu -9 167 1 2377 109 0 0 chrX 93108710 93109022 -69490908 - AluSx SINE Alu 0 312 1 3548 130 6 13 chrX 93109022 93109882 -69490048 - L1M1 LINE L1 -523 5782 4927 239 332 101 42 chrX 93110054 93110337 -69489593 - L2 LINE L2 -223 3049 2690 1476 142 123 29 chrX 93110337 93110548 -69489382 - MER44D DNA MER2_type -1883 608 418 2190 122 0 3 chrX 93110548 93110851 -69489079 + AluJb SINE Alu 3 304 -8 1476 142 123 29 chrX 93110851 93110948 -69488982 - MER44D DNA MER2_type -2073 418 1 239 332 101 42 chrX 93110948 93111092 -69488838 - L2 LINE L2 -582 2690 2556 3836 139 36 23 chrX 93112442 93112635 -69487295 + L1MB7 LINE L1 5166 5355 -823 2504 75 0 0 chrX 93112635 93112942 -69486988 + AluY SINE Alu 1 307 -4 3836 139 36 23 chrX 93112942 93113525 -69486405 + L1MB7 LINE L1 5355 5957 -221 898 166 0 0 chrX 93113625 93113776 -69486154 + AluJb SINE Alu 162 312 0 310 104 0 0 chrX 93113789 93113837 -69486093 + L1MB7 LINE L1 6118 6165 -19 2378 90 0 0 chrX 93113954 93114255 -69485675 - AluY SINE Alu -9 302 2 2270 107 10 7 chrX 93114675 93114984 -69484946 - AluSx SINE Alu -1 311 2 257 293 9 38 chrX 93114993 93115099 -69484831 - L3 LINE CR1 -123 1454 1352 268 243 29 0 chrX 93115240 93115310 -69484620 + MIR SINE MIR 184 255 -7 714 313 15 34 chrX 93115482 93115747 -69484183 + LTR67 LTR ERVL 2 261 -296 231 233 100 11 chrX 93115892 93115982 -69483948 + LTR67 LTR ERVL 431 528 -29 405 306 49 22 chrX 93116182 93116365 -69483565 - L3 LINE CR1 -503 1074 887 322 68 0 0 chrX 93116914 93116958 -69482972 + Alu SINE Alu 238 281 -20 327 65 0 0 chrX 93116960 93117006 -69482924 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 862 112 0 0 chrX 93117008 93117124 -69482806 - AluSq/x SINE Alu -192 120 5 230 209 0 0 chrX 93117290 93117333 -69482597 - L1MA4A LINE L1 -8 6295 6253 260 311 0 0 chrX 93117798 93117872 -69482058 - Charlie8 DNA MER1_type -3 2414 2341 928 258 20 63 chrX 93117899 93118201 -69481729 - Charlie8 DNA MER1_type -2128 289 1 396 279 63 32 chrX 93118210 93118368 -69481562 - MER5A DNA MER1_type -1 188 26 26 82 0 0 chrX 93118550 93118611 -69481319 + AT_rich Low_complexity Low_complexity 1 61 0 560 136 0 29 chrX 93118767 93118870 -69481060 - FRAM SINE Alu -3 173 74 1332 77 18 0 chrX 93118876 93119044 -69480886 + AluSg SINE Alu 1 171 -139 258 250 0 0 chrX 93119642 93119690 -69480240 + L2 LINE L2 3252 3299 -14 455 316 6 23 chrX 93120008 93120182 -69479748 - MIR3 SINE MIR 0 208 38 246 329 12 0 chrX 93124698 93124783 -69475147 + (TA)n Simple_repeat Simple_repeat 1 86 0 6006 80 42 5 chrX 93125680 93126559 -69473371 + L1PB1 LINE L1 5235 6149 -2 2250 79 7 0 chrX 93128733 93129023 -69470907 + AluSg1 SINE Alu 4 295 -14 646 269 39 19 chrX 93129678 93129935 -69469995 - HAL1 LINE L1 -1 2506 2245 4299 141 38 12 chrX 93130638 93131405 -69468525 - L1MC1 LINE L1 0 6333 5547 2270 87 10 0 chrX 93131578 93131876 -69468054 - AluSp SINE Alu -12 301 1 502 329 0 28 chrX 93131892 93132035 -69467895 + L2 LINE L2 3134 3272 0 514 251 84 32 chrX 93133779 93133992 -69465938 - L1MA10 LINE L1 0 6334 5956 2632 218 109 18 chrX 93134072 93134952 -69464978 - L1M4 LINE L1 -2911 3235 2276 401 0 0 20 chrX 93135124 93135174 -69464756 + (TA)n Simple_repeat Simple_repeat 1 49 0 2928 122 42 63 chrX 93135174 93135658 -69464272 - L1MA3 LINE L1 -43 6262 5788 1235 242 10 3 chrX 93135658 93135964 -69463966 - AluSx SINE Alu 0 312 5 2928 122 42 63 chrX 93135964 93136045 -69463885 - L1MA3 LINE L1 -517 5788 5707 207 196 54 0 chrX 93136299 93136355 -69463575 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 1493 239 115 30 chrX 93136355 93137082 -69462848 + Charlie7 DNA MER1_type 759 1602 -1010 1762 96 118 7 chrX 93137082 93137354 -69462576 + AluSg SINE Alu 1 302 -8 1493 239 115 30 chrX 93137354 93137421 -69462509 + Charlie7 DNA MER1_type 1602 1662 -950 1533 212 110 41 chrX 93137709 93138241 -69461689 + Charlie7 DNA MER1_type 1987 2564 -48 198 0 0 0 chrX 93138241 93138263 -69461667 + (TA)n Simple_repeat Simple_repeat 2 23 0 1533 212 110 41 chrX 93138263 93138311 -69461619 + Charlie7 DNA MER1_type 2564 2607 -5 1329 180 90 0 chrX 93138324 93138591 -69461339 - MER58B DNA MER1_type 0 341 51 401 317 0 0 chrX 93138749 93138853 -69461077 + L2 LINE L2 3180 3283 -30 295 361 49 49 chrX 93138995 93139178 -69460752 + L2 LINE L2 3082 3264 -8 1380 196 25 0 chrX 93140590 93140865 -69459065 + AluJo SINE Alu 30 311 -1 1375 188 59 10 chrX 93141208 93141496 -69458434 + AluJo SINE Alu 1 302 -10 2291 91 3 0 chrX 93142102 93142400 -69457530 + AluSp SINE Alu 1 299 -14 548 293 29 39 chrX 93142988 93143196 -69456734 + MIR SINE MIR 45 250 -12 2164 127 55 41 chrX 93143429 93143847 -69456083 - L1MA8 LINE L1 -3 6288 5865 1335 161 9 0 chrX 93143847 93144070 -69455860 + L1M2 LINE L1 5422 5646 -654 2254 106 10 0 chrX 93144444 93144747 -69455183 + AluSx SINE Alu 1 306 -6 4105 248 146 36 chrX 93144795 93145626 -69454304 - L2 LINE L2 -429 2885 2146 1927 147 0 26 chrX 93145626 93145933 -69453997 + AluJo SINE Alu 3 301 -11 4105 248 146 36 chrX 93145933 93146591 -69453339 - L2 LINE L2 -1168 2146 1233 183 211 246 0 chrX 93147749 93147806 -69452124 - L2 LINE L2 -11 3302 3232 977 201 38 19 chrX 93149288 93149497 -69450433 + MIR SINE MIR 2 214 -48 352 222 0 25 chrX 93150181 93150262 -69449668 - MIR3 SINE MIR -2 206 128 1941 109 7 53 chrX 93150705 93151009 -69448921 + AluSg SINE Alu 1 290 -20 27 29 0 0 chrX 93151715 93151749 -69448181 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chrX 93152177 93152222 -69447708 + AT_rich Low_complexity Low_complexity 1 45 0 237 315 27 0 chrX 93153440 93153513 -69446417 - MIR3 SINE MIR -5 203 129 1422 255 84 18 chrX 93153658 93154342 -69445588 + L2 LINE L2 2581 3307 -6 250 361 31 8 chrX 93154344 93154474 -69445456 + L2 LINE L2 2716 2848 -466 393 224 17 132 chrX 93156126 93156172 -69443758 - L2 LINE L2 -1 3312 3262 3179 78 9 9 chrX 93156172 93156622 -69443308 + LTR7 LTR ERV1 1 450 0 393 224 17 132 chrX 93156622 93156749 -69443181 - L2 LINE L2 -51 3262 3159 1715 124 20 47 chrX 93158186 93158541 -69441389 + MER4A LTR ERV1 261 664 0 2089 114 0 13 chrX 93158898 93159196 -69440734 + AluSx SINE Alu 1 294 -18 540 308 56 20 chrX 93159275 93159340 -69440590 + L2 LINE L2 3108 3169 -144 2193 82 4 0 chrX 93159340 93159621 -69440309 - AluSg1 SINE Alu -6 303 22 540 308 56 20 chrX 93159621 93159750 -69440180 + L2 LINE L2 3169 3309 -4 595 281 125 10 chrX 93160123 93160426 -69439504 - MER46C DNA MER2_type 0 338 1 547 274 91 21 chrX 93160511 93160752 -69439178 - MIR SINE MIR -2 260 3 276 380 9 0 chrX 93161016 93161124 -69438806 + L2 LINE L2 3181 3289 -24 201 147 0 0 chrX 93161159 93161193 -69438737 + (GA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chrX 93161999 93162021 -69437909 + AT_rich Low_complexity Low_complexity 1 22 0 244 232 80 45 chrX 93162073 93162185 -69437745 - Zaphod DNA AcHobo -430 3601 3486 2288 97 0 7 chrX 93163183 93163492 -69436438 + AluSx SINE Alu 1 307 -5 967 153 77 0 chrX 93164740 93164923 -69435007 + LTR55 LTR ERV 1 197 -351 225 286 29 0 chrX 93164960 93165030 -69434900 + GA-rich Low_complexity Low_complexity 4 75 0 2251 95 0 3 chrX 93165039 93165335 -69434595 - AluSx SINE Alu -17 295 1 537 263 66 0 chrX 93165473 93165610 -69434320 - MIR SINE MIR -13 249 104 1315 155 32 41 chrX 93167553 93167869 -69432061 + L1 LINE L1 4582 4894 -1252 404 273 87 27 chrX 93167987 93168137 -69431793 + MIR SINE MIR 98 256 -6 869 63 0 0 chrX 93168337 93168448 -69431482 + HY1 scRNA scRNA 1 111 -1 310 380 100 30 chrX 93168464 93168735 -69431195 + L2 LINE L2 2978 3267 -5 243 152 0 0 chrX 93169235 93169281 -69430649 + (TG)n Simple_repeat Simple_repeat 2 47 0 1939 129 21 0 chrX 93169654 93169934 -69429996 + AluJb SINE Alu 1 286 -26 1097 182 53 5 chrX 93170365 93170574 -69429356 - MER20 DNA MER1_type 0 219 1 1714 157 16 33 chrX 93170926 93171231 -69428699 + AluJo SINE Alu 1 300 -12 2259 99 3 0 chrX 93172300 93172593 -69427337 - AluSx SINE Alu -18 294 1 946 207 129 43 chrX 93172719 93173139 -69426791 + LTR40c LTR ERVL 6 461 -4 435 245 26 54 chrX 93173529 93173662 -69426268 - MIR3 SINE MIR -8 200 70 1014 173 0 23 chrX 93173683 93173856 -69426074 - AluJb SINE Alu -7 305 137 2076 142 0 10 chrX 93174707 93175009 -69424921 + AluSx SINE Alu 2 300 -12 2273 98 0 0 chrX 93175316 93175611 -69424319 + AluSx SINE Alu 1 295 -17 2181 114 0 0 chrX 93175974 93176254 -69423676 - AluSq SINE Alu -31 282 3 358 304 152 0 chrX 93176315 93176440 -69423490 - MER91A DNA MER1_type -10 186 43 276 250 128 47 chrX 93177699 93177871 -69422059 + L1MC4 LINE L1 7840 8025 -17 203 255 0 0 chrX 93179134 93179181 -69420749 + MIR SINE MIR 103 149 -113 280 263 42 53 chrX 93179688 93179783 -69420147 - MIR SINE MIR -98 110 17 491 319 141 41 chrX 93180575 93181007 -69418923 + L2 LINE L2 2624 3093 -179 850 210 19 6 chrX 93181043 93181205 -69418725 - FRAM SINE Alu -13 163 1 334 268 0 0 chrX 93181266 93181337 -69418593 + L2 LINE L2 3242 3312 -1 2213 108 3 10 chrX 93181372 93181678 -69418252 + AluSx SINE Alu 1 304 -8 273 29 0 0 chrX 93232438 93232472 -69367458 + (CCGGG)n Simple_repeat Simple_repeat 4 37 0 378 294 114 68 chrX 93232560 93233015 -69366915 + L1M2 LINE L1 529 1004 -5845 414 85 0 0 chrX 93234049 93234108 -69365822 + (TC)n Simple_repeat Simple_repeat 2 60 0 387 0 0 0 chrX 93234712 93234755 -69365175 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 927 224 107 22 chrX 93237070 93237342 -69362588 - MLT1C LTR MaLR -168 299 5 1972 125 51 0 chrX 93237599 93237894 -69362036 + AluSx SINE Alu 1 310 -2 544 159 0 0 chrX 93238684 93238772 -69361158 + L1MA5 LINE L1 6211 6298 -2 253 336 130 30 chrX 93239135 93239397 -69360533 + L2 LINE L2 1063 1350 -1964 323 294 50 50 chrX 93239408 93239568 -69360362 + HAL1b LINE L1 183 342 -1006 434 240 74 65 chrX 93239576 93239793 -69360137 + HAL1b LINE L1 381 599 -749 479 195 202 54 chrX 93239862 93240139 -69359791 + L1MC5 LINE L1 7204 7521 -440 350 311 90 34 chrX 93240221 93240398 -69359532 + L1ME3A LINE L1 5962 6148 -22 351 159 0 32 chrX 93240399 93240462 -69359468 + AluSc SINE Alu 122 182 -117 1079 182 0 26 chrX 93240731 93240923 -69359007 - AluJo SINE Alu -125 187 1 680 155 56 50 chrX 93241421 93241582 -69358348 - L1MC5 LINE L1 -60 7901 7740 222 350 92 25 chrX 93241900 93242020 -69357910 + MIR3 SINE MIR 5 132 -76 1954 146 0 17 chrX 93242230 93242525 -69357405 + AluJo SINE Alu 1 290 -22 260 53 26 0 chrX 93242526 93242564 -69357366 + (TA)n Simple_repeat Simple_repeat 2 40 0 2438 96 21 44 chrX 93243243 93243587 -69356343 + THE1C LTR MaLR 1 337 -38 2133 104 0 3 chrX 93243587 93243901 -69356029 - AluSg SINE Alu 0 310 1 2438 96 21 44 chrX 93243901 93243940 -69355990 + THE1C LTR MaLR 337 375 0 2247 106 3 3 chrX 93244839 93245141 -69354789 + AluSx SINE Alu 1 302 -10 2098 116 3 7 chrX 93245904 93246196 -69353734 + AluSx SINE Alu 6 296 -16 1276 246 94 43 chrX 93248463 93249256 -69350674 - L2 LINE L2 -9 3304 2483 645 229 148 11 chrX 93249554 93249737 -69350193 + MIR SINE MIR 34 241 -21 345 176 38 145 chrX 93249837 93249968 -69349962 + L1MA9 LINE L1 6159 6275 -37 1914 155 10 3 chrX 93250598 93250894 -69349036 - AluJo SINE Alu -3 309 12 534 274 100 46 chrX 93251061 93251302 -69348628 - MIR SINE MIR -4 258 5 271 254 45 0 chrX 93251559 93251626 -69348304 - MIR SINE MIR -110 152 83 2039 155 58 34 chrX 93251832 93252100 -69347830 - MLT1B LTR MaLR 0 390 109 1966 149 3 3 chrX 93252100 93252396 -69347534 - AluJb SINE Alu -16 296 1 2039 155 58 34 chrX 93252396 93252508 -69347422 - MLT1B LTR MaLR -281 109 1 23 33 0 0 chrX 93254214 93254244 -69345686 + AT_rich Low_complexity Low_complexity 1 30 0 1516 205 134 33 chrX 93254331 93254755 -69345175 + MLT1C LTR MaLR 1 467 0 1798 150 69 46 chrX 93254822 93255205 -69344725 + THE1B LTR MaLR 1 407 -21 296 89 0 22 chrX 93255207 93255252 -69344678 + THE1B LTR MaLR 293 336 -28 1369 213 20 55 chrX 93255578 93255925 -69344005 + MLT1A1 LTR MaLR 1 335 -30 855 91 0 0 chrX 93256532 93256642 -69343288 + AluSg SINE Alu 1 110 -200 282 137 0 39 chrX 93256644 93256695 -69343235 - AluSp SINE Alu -134 169 121 2168 97 7 27 chrX 93256826 93257124 -69342806 - AluSx SINE Alu -20 292 1 2177 128 0 0 chrX 93258129 93258427 -69341503 - AluSx SINE Alu -14 298 1 1852 161 10 20 chrX 93258481 93258786 -69341144 - AluJo SINE Alu -10 302 1 2230 100 0 0 chrX 93260112 93260425 -69339505 - AluSx SINE Alu 0 313 1 1529 132 0 5 chrX 93260515 93260727 -69339203 + AluJb SINE Alu 86 296 -16 25 0 0 0 chrX 93260874 93260899 -69339031 + AT_rich Low_complexity Low_complexity 1 25 0 535 209 29 81 chrX 93261041 93261092 -69338838 + MER103 DNA DNA 2 54 -112 2484 48 0 10 chrX 93261092 93261384 -69338546 + AluY SINE Alu 1 289 -22 1369 169 66 80 chrX 93261387 93261688 -69338242 - AluJo SINE Alu -13 299 3 535 209 29 81 chrX 93261688 93261804 -69338126 + MER103 DNA DNA 56 164 -2 331 309 117 31 chrX 93261967 93262129 -69337801 - MER5A DNA MER1_type -11 178 3 1062 163 0 18 chrX 93262254 93262420 -69337510 + FRAM SINE Alu 1 163 -3 206 293 30 71 chrX 93264894 93264993 -69334937 + L2 LINE L2 3199 3293 -20 310 320 41 20 chrX 93266337 93266484 -69333446 + L2 LINE L2 3164 3313 0 27 0 0 0 chrX 93266849 93266876 -69333054 + AT_rich Low_complexity Low_complexity 1 27 0 920 211 65 0 chrX 93266877 93267062 -69332868 - AluJo SINE Alu -30 282 86 348 224 143 0 chrX 93267291 93267389 -69332541 + L2 LINE L2 3201 3312 -1 686 312 48 25 chrX 93267415 93267729 -69332201 + L2 LINE L2 2876 3196 -117 570 270 81 38 chrX 93267769 93268220 -69331710 - LTR33 LTR ERVL 0 523 14 362 316 0 11 chrX 93268224 93268319 -69331611 + L2 LINE L2 3174 3267 -5 192 264 104 88 chrX 93268798 93268923 -69331007 - L2 LINE L2 -598 2716 2590 418 266 186 0 chrX 93269375 93269488 -69330442 - MIR SINE MIR -56 152 19 418 158 149 8 chrX 93269847 93269975 -69329955 - L1ME3A LINE L1 -265 5901 5763 1019 198 11 0 chrX 93270135 93270322 -69329608 + MER5A DNA MER1_type 1 189 0 237 151 0 0 chrX 93270356 93270409 -69329521 + CT-rich Low_complexity Low_complexity 2 54 0 429 20 0 0 chrX 93270714 93270764 -69329166 + (TG)n Simple_repeat Simple_repeat 1 50 0 204 364 119 14 chrX 93271484 93271627 -69328303 + L2 LINE L2 2569 2726 -588 520 318 47 86 chrX 93271898 93272477 -69327453 + L2 LINE L2 2710 3268 -4 286 247 41 21 chrX 93276134 93276231 -69323699 + MER103 DNA DNA 21 119 -47 502 274 40 162 chrX 93276734 93277266 -69322664 - L2 LINE L2 0 3313 2847 856 225 47 0 chrX 93277444 93277613 -69322317 + MER5A DNA MER1_type 1 177 -12 594 273 32 0 chrX 93277799 93277953 -69321977 - MIR SINE MIR -37 225 67 444 257 10 20 chrX 93278127 93278228 -69321702 - MIR SINE MIR -84 124 25 249 111 0 0 chrX 93278688 93278724 -69321206 + U2 snRNA snRNA 1 36 -152 11701 103 18 39 chrX 93279255 93281684 -69318246 + L1PA7 LINE L1 8 2418 -4043 1939 132 38 3 chrX 93281668 93282008 -69317922 + L1PA7 LINE L1 2738 3089 -3372 * 6880 68 6 1 chrX 93282014 93283701 -69316229 + L1PA7 LINE L1 4777 6469 0 470 243 9 9 chrX 93284507 93284618 -69315312 + MER81 DNA DNA 1 111 -3 733 281 99 14 chrX 93285502 93285723 -69314207 + MIR SINE MIR 2 241 -21 1841 120 29 80 chrX 93286145 93286519 -69313411 - MER46B DNA MER2_type 0 236 7 1843 171 47 54 chrX 93286837 93286890 -69313040 + MSTC LTR MaLR 1 53 -375 2314 110 0 0 chrX 93286890 93287198 -69312732 + AluSx SINE Alu 1 308 -4 1843 171 47 54 chrX 93287198 93287572 -69312358 + MSTC LTR MaLR 53 425 -3 1434 203 50 39 chrX 93287574 93287933 -69311997 + MLT1A1 LTR MaLR 3 365 0 501 219 82 15 chrX 93287934 93288130 -69311800 - L1MC5 LINE L1 -48 7913 7705 27 29 0 0 chrX 93288430 93288464 -69311466 + AT_rich Low_complexity Low_complexity 1 34 0 225 338 12 0 chrX 93290238 93290318 -69309612 + MIR SINE MIR 76 156 -106 1490 114 101 0 chrX 93290458 93290677 -69309253 + AluJb SINE Alu 57 297 -15 309 273 11 0 chrX 93290955 93291043 -69308887 - MER81 DNA DNA -2 112 24 1971 132 31 0 chrX 93291224 93291511 -69308419 + AluSx SINE Alu 1 296 -16 2001 186 131 34 chrX 93291583 93292055 -69307875 - MLT2B1 LTR ERVL 0 520 3 2032 95 37 0 chrX 93294432 93294728 -69305202 - AluSx SINE Alu 0 306 1 402 143 104 143 chrX 93295585 93295739 -69304191 + MLT1B LTR MaLR 1 148 -226 713 144 65 33 chrX 93295740 93295893 -69304037 + MLT1A1 LTR MaLR 1 158 -207 461 98 0 0 chrX 93295893 93295954 -69303976 + Alu SINE Alu 1 61 -257 958 197 44 0 chrX 93296003 93296206 -69303724 + MLT1A1 LTR MaLR 154 365 0 882 215 0 80 chrX 93296206 93296456 -69303474 + MLT1B LTR MaLR 145 390 0 2401 49 39 26 chrX 93296974 93297281 -69302649 - AluY SINE Alu 0 311 1 27 29 0 0 chrX 93297294 93297328 -69302602 + AT_rich Low_complexity Low_complexity 1 34 0 228 225 0 0 chrX 93297897 93297937 -69301993 + (CAT)n Simple_repeat Simple_repeat 2 41 0 870 143 0 164 chrX 93298564 93298795 -69301135 + 7SK RNA RNA 1 193 0 204 303 97 51 chrX 93298970 93299145 -69300785 - MER5A DNA MER1_type -6 183 1 1858 151 0 26 chrX 93299845 93300023 -69299907 - AluSx SINE Alu -16 296 128 3383 145 19 73 chrX 93300023 93300753 -69299177 - LTR8 LTR ERV1 0 691 1 1858 151 0 26 chrX 93300753 93300878 -69299052 - AluSx SINE Alu -184 128 1 3115 184 52 21 chrX 93302795 93303500 -69296430 - LTR8A LTR ERV1 0 727 1 2287 102 23 0 chrX 93303839 93304143 -69295787 + AluSq SINE Alu 1 311 -2 181 179 0 26 chrX 93304145 93304184 -69295746 + MIR SINE MIR 7 44 -218 505 203 32 107 chrX 93304204 93304391 -69295539 - L2 LINE L2 -16 3297 3125 771 293 38 43 chrX 93304392 93304756 -69295174 - L2 LINE L2 -308 3005 2644 386 253 0 11 chrX 93304802 93304893 -69295037 + MIR SINE MIR 66 155 -107 1204 150 39 21 chrX 93304893 93305201 -69294729 + MER61B LTR ERV1 1 396 -28 253 274 158 11 chrX 93305205 93305300 -69294630 + MIR SINE MIR 146 254 -8 255 224 35 35 chrX 93305360 93305445 -69294485 - L2 LINE L2 -665 2649 2565 488 282 68 6 chrX 93307287 93307468 -69292462 - MIR SINE MIR -35 227 38 529 274 86 11 chrX 93307504 93307679 -69292251 + L2 LINE L2 3121 3308 -5 1010 151 0 24 chrX 93307847 93308035 -69291895 + FRAM SINE Alu 1 52 0 258 189 11 53 chrX 93308168 93308263 -69291667 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 216 366 159 31 chrX 93308400 93308657 -69291273 - L2 LINE L2 -138 3134 2845 202 331 116 60 chrX 93308732 93308880 -69291050 - L2 LINE L2 -662 2652 2514 2207 122 0 49 chrX 93308880 93309208 -69290722 + AluSx SINE Alu 1 312 0 202 331 116 60 chrX 93309208 93309440 -69290490 - L2 LINE L2 -800 2514 2251 962 294 39 53 chrX 93309455 93310006 -69289924 - L2 LINE L2 -2 3311 2771 2217 107 33 0 chrX 93310023 93310323 -69289607 - AluSx SINE Alu -2 310 1 419 338 91 24 chrX 93310418 93310714 -69289216 - L2 LINE L2 -1100 2214 1899 238 236 0 146 chrX 93311228 93311351 -69288579 + L2 LINE L2 3207 3311 -2 301 274 25 25 chrX 93311691 93311848 -69288082 + (TA)n Simple_repeat Simple_repeat 2 158 0 22 35 0 0 chrX 93312043 93312072 -69287858 + AT_rich Low_complexity Low_complexity 1 29 0 1631 108 58 41 chrX 93312449 93312642 -69287288 - Tigger3b DNA MER2_type -1798 1230 1029 2452 64 3 0 chrX 93312642 93312938 -69286992 + AluSp SINE Alu 1 297 -16 1631 108 58 41 chrX 93312938 93313039 -69286891 - Tigger3b DNA MER2_type -1999 1029 931 * 3661 128 43 0 chrX 93313038 93313662 -69286268 - Tigger3b DNA MER2_type -580 651 1 271 300 12 12 chrX 93314090 93314170 -69285760 + MIR SINE MIR 3 82 -180 794 266 150 97 chrX 93314187 93314714 -69285216 + MLT1K LTR MaLR 16 570 -18 230 237 102 0 chrX 93314737 93314796 -69285134 + MIR SINE MIR 87 151 -57 218 387 0 0 chrX 93316467 93316560 -69283370 - MIR SINE MIR -121 141 49 324 341 30 23 chrX 93316812 93316944 -69282986 - MIR SINE MIR -56 152 20 236 149 21 0 chrX 93317082 93317129 -69282801 + (TA)n Simple_repeat Simple_repeat 1 48 0 662 249 190 40 chrX 93317282 93317754 -69282176 - LTR50 LTR ERVL -169 626 1 1189 337 78 35 chrX 93317954 93318755 -69281175 + L2 LINE L2 1854 2694 -620 2244 143 23 3 chrX 93318755 93319141 -69280789 + L1MA4 LINE L1 5901 6294 -6 1189 337 78 35 chrX 93319141 93319184 -69280746 + L2 LINE L2 2694 2734 -580 442 321 36 30 chrX 93319414 93319579 -69280351 + L2 LINE L2 3107 3272 0 1689 127 92 13 chrX 93320403 93320717 -69279213 - MER44D DNA MER2_type 0 609 1 391 262 28 62 chrX 93322686 93322831 -69277099 + MIR SINE MIR 1 140 -122 201 265 0 0 chrX 93323017 93323066 -69276864 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 786 249 118 0 chrX 93323122 93323359 -69276571 - MLT1H1 LTR MaLR 0 555 291 264 59 0 0 chrX 93323636 93323670 -69276260 + (TG)n Simple_repeat Simple_repeat 1 34 0 227 308 15 8 chrX 93323682 93323815 -69276115 + HAL1b LINE L1 1207 1340 -8 737 262 52 14 chrX 93323838 93324182 -69275748 - L1ME4a LINE L1 -94 6027 5543 1932 176 67 3 chrX 93324408 93324795 -69275135 + MER63B DNA MER1_type 2 413 -23 230 278 42 0 chrX 93325620 93325692 -69274238 - MIR3 SINE MIR -1 207 133 2166 115 17 0 chrX 93326284 93326579 -69273351 + AluSq SINE Alu 1 300 -13 194 281 0 73 chrX 93327086 93327168 -69272762 - MIR SINE MIR -140 122 47 1969 255 108 16 chrX 93327393 93327696 -69272234 + MER90 LTR ERV1 11 285 -329 2292 101 48 28 chrX 93327696 93328053 -69271877 + THE1B LTR MaLR 1 364 0 1969 255 108 16 chrX 93328053 93328302 -69271628 + MER90 LTR ERV1 285 614 0 501 319 25 12 chrX 93328556 93328719 -69271211 + MIR3 SINE MIR 39 203 -5 218 81 27 0 chrX 93329542 93329579 -69270351 + (TG)n Simple_repeat Simple_repeat 1 38 0 465 258 8 0 chrX 93331786 93331918 -69268012 + MER103 DNA DNA 31 163 -3 1544 166 27 40 chrX 93331976 93332277 -69267653 + AluJo SINE Alu 1 297 -15 560 194 69 57 chrX 93333547 93333625 -69266305 - MER69A DNA AcHobo -2349 177 101 2398 78 0 0 chrX 93333625 93333933 -69265997 + AluY SINE Alu 1 308 -3 560 194 69 57 chrX 93333933 93334029 -69265901 - MER69A DNA AcHobo -2425 101 1 312 319 0 22 chrX 93334062 93334177 -69265753 - MER5A DNA MER1_type -18 171 50 1189 185 37 116 chrX 93334241 93334620 -69265310 + L1MA10 LINE L1 5986 6334 0 986 183 53 153 chrX 93335236 93335672 -69264258 - MLT2C2 LTR ERVL 0 464 63 286 336 24 16 chrX 93336121 93336246 -69263684 + L2 LINE L2 3138 3263 -9 22 0 0 0 chrX 93338094 93338116 -69261814 + AT_rich Low_complexity Low_complexity 1 22 0 1039 269 24 40 chrX 93338903 93339056 -69260874 + L2 LINE L2 2941 3095 -218 267 54 0 0 chrX 93339056 93339093 -69260837 + (CA)n Simple_repeat Simple_repeat 1 37 0 1039 269 24 40 chrX 93339093 93339318 -69260612 + L2 LINE L2 3095 3313 0 5599 124 44 105 chrX 93339775 93340150 -69259780 - Tigger3b DNA MER2_type -1801 1227 831 203 61 30 0 chrX 93340150 93340183 -69259747 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5599 124 44 105 chrX 93340183 93340444 -69259486 - Tigger3b DNA MER2_type -2197 831 556 2272 104 0 0 chrX 93340444 93340741 -69259189 - AluSp SINE Alu -16 297 1 5599 124 44 105 chrX 93340741 93341408 -69258522 - Tigger3b DNA MER2_type -2472 556 2 6350 141 5 3 chrX 93341683 93343196 -69256734 + L1PB1 LINE L1 4635 6150 -1 399 275 53 29 chrX 93343822 93343993 -69255937 - MARNA DNA Mariner -14 572 398 * 566 274 32 37 chrX 93343860 93344050 -69255880 + MARNA DNA Mariner 50 238 -348 296 309 75 0 chrX 93344235 93344329 -69255601 + L2 LINE L2 3207 3307 -6 2249 166 35 2 chrX 93344599 93344997 -69254933 - MSTB LTR MaLR -15 411 1 502 246 56 60 chrX 93345007 93345222 -69254708 + MLT1L LTR MaLR 6 219 -396 26 0 0 0 chrX 93345421 93345447 -69254483 + AT_rich Low_complexity Low_complexity 1 26 0 5079 27 0 0 chrX 93345454 93346045 -69253885 - L1PA4 LINE L1 -8 6147 5557 272 108 0 0 chrX 93346094 93346131 -69253799 + MLT1L LTR MaLR 573 609 -6 200 279 16 16 chrX 93347346 93347407 -69252523 - MIR SINE MIR -3 259 199 5672 75 13 8 chrX 93347838 93348609 -69251321 - L1PA8 LINE L1 0 6172 5398 2427 77 0 3 chrX 93348620 93348919 -69251011 - AluY SINE Alu -13 298 1 854 114 0 0 chrX 93349685 93349808 -69250122 - L1MA3 LINE L1 0 6305 6183 240 170 0 0 chrX 93349808 93349855 -69250075 + U5 snRNA snRNA 1 47 -69 2126 121 3 0 chrX 93350021 93350318 -69249612 - AluSx SINE Alu -14 298 1 192 293 134 0 chrX 93351028 93351110 -69248820 - MIR SINE MIR -55 207 115 390 226 242 16 chrX 93351256 93351440 -69248490 + MIR SINE MIR 20 244 -18 386 32 32 65 chrX 93351665 93351758 -69248172 + (TATAA)n Simple_repeat Simple_repeat 1 90 0 259 287 43 21 chrX 93351773 93351867 -69248063 - MIR SINE MIR -26 236 141 4821 169 29 11 chrX 93352483 93353641 -69246289 - L1MB4 LINE L1 0 6678 5504 6397 240 60 20 chrX 93353650 93357275 -69242655 - L1MB4 LINE L1 -2283 4361 350 232 269 0 0 chrX 93357498 93357550 -69242380 - L1M3d LINE L1 -5839 52 1 326 308 8 17 chrX 93357977 93358097 -69241833 + L1M4 LINE L1 3589 3707 -2439 1473 97 14 0 chrX 93358144 93358361 -69241569 + L1PA13 LINE L1 5690 5909 -259 750 83 0 0 chrX 93358360 93358456 -69241474 + L1PA5 LINE L1 3 98 -6048 * 37225 57 4 0 chrX 93358454 93363972 -69235958 + L1PA5 LINE L1 623 6154 0 1942 61 30 0 chrX 93363972 93364231 -69235699 + L1PA13 LINE L1 5891 6161 -2 573 126 0 0 chrX 93364231 93364318 -69235612 - L1MC/D LINE L1 -546 5787 5701 2243 96 7 0 chrX 93364575 93364867 -69235063 + AluSc SINE Alu 1 294 -15 13378 187 25 13 chrX 93365566 93370097 -69229833 + L1P4 LINE L1 2 5158 -2426 303 28 0 0 chrX 93370097 93370133 -69229797 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 13378 187 25 13 chrX 93370133 93371441 -69228489 + L1P4 LINE L1 5158 6449 -1135 1895 149 33 0 chrX 93372259 93372737 -69227193 + L1P4 LINE L1 6415 6907 -699 * 2170 234 72 20 chrX 93372734 93373370 -69226560 - L1MC4 LINE L1 -120 7922 7254 458 209 110 28 chrX 93373376 93373558 -69226372 + L1ME4a LINE L1 5723 5919 -202 580 282 0 0 chrX 93373599 93373741 -69226189 - LTR16A LTR ERVL 0 450 309 518 325 48 15 chrX 93373859 93374065 -69225865 - LTR16A LTR ERVL -222 228 16 2095 199 24 65 chrX 93375659 93376201 -69223729 + MLT2B1 LTR ERVL 1 520 0 406 292 56 39 chrX 93376276 93376454 -69223476 - MIR SINE MIR -77 185 5 2368 171 7 67 chrX 93376763 93376823 -69223107 - L1 LINE L1 -788 5358 5296 246 32 0 0 chrX 93376823 93376854 -69223076 + (TC)n Simple_repeat Simple_repeat 2 32 0 2368 171 7 67 chrX 93376854 93377332 -69222598 - L1 LINE L1 -850 5296 4852 5045 138 8 2 chrX 93377333 93378138 -69221792 + L1MB1 LINE L1 5360 6168 0 276 348 29 51 chrX 93379436 93379574 -69220356 - MLT1K LTR MaLR -348 240 106 423 261 261 0 chrX 93379698 93379932 -69219998 + L1ME3A LINE L1 3106 3400 -2746 474 299 15 34 chrX 93380235 93380439 -69219491 + LTR16C LTR ERVL 261 460 -31 379 292 80 68 chrX 93380521 93381104 -69218826 + L1ME3A LINE L1 3440 5856 -314 2291 145 22 20 chrX 93381207 93381613 -69218317 - L1PB4 LINE L1 -8 6148 5742 21 0 0 0 chrX 93381775 93381796 -69218134 + AT_rich Low_complexity Low_complexity 1 21 0 2153 96 21 0 chrX 93381907 93382189 -69217741 - AluSc SINE Alu -21 288 1 273 197 0 0 chrX 93382447 93382513 -69217417 + (TATG)n Simple_repeat Simple_repeat 3 68 0 186 103 0 0 chrX 93382548 93382577 -69217353 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 686 269 196 17 chrX 93382580 93382905 -69217025 + L1ME4a LINE L1 5491 5756 -365 465 76 38 0 chrX 93382905 93382984 -69216946 + (TA)n Simple_repeat Simple_repeat 1 82 0 686 269 196 17 chrX 93382984 93383193 -69216737 + L1ME4a LINE L1 5756 6121 0 26 0 0 0 chrX 93384106 93384132 -69215798 + AT_rich Low_complexity Low_complexity 1 26 0 5459 106 17 38 chrX 93384961 93385996 -69213934 - L1PB2 LINE L1 -1 6150 5169 3156 172 0 4 chrX 93385996 93386508 -69213422 + L1PB2 LINE L1 160 669 -5535 * 12597 183 9 18 chrX 93386507 93387139 -69212791 + L1PB2 LINE L1 2550 3187 -3021 2122 42 0 0 chrX 93387139 93387400 -69212530 + L1PA5 LINE L1 5894 6154 0 12597 183 9 18 chrX 93387400 93387782 -69212148 + L1PB2 LINE L1 3187 3571 -2637 5861 56 0 0 chrX 93387782 93388515 -69211415 + L1PA7 LINE L1 5417 6149 -5 12597 183 9 18 chrX 93388515 93389287 -69210643 + L1PB2 LINE L1 3571 4349 -1859 2373 53 10 10 chrX 93389287 93389589 -69210341 + AluY SINE Alu 1 302 -9 12597 183 9 18 chrX 93389589 93391499 -69208431 + L1PB2 LINE L1 4349 6208 0 4899 118 14 16 chrX 93392468 93392789 -69207141 + L1PB1 LINE L1 4854 5174 -977 189 0 0 0 chrX 93392789 93392810 -69207120 + (TAA)n Simple_repeat Simple_repeat 2 22 0 4899 118 14 16 chrX 93392810 93393563 -69206367 + L1PB1 LINE L1 5174 5935 -216 1580 171 67 76 chrX 93393693 93393789 -69206141 + MSTC LTR MaLR 1 96 -332 2060 128 7 0 chrX 93393789 93394085 -69205845 + AluSx SINE Alu 1 298 -14 1580 171 67 76 chrX 93394085 93394420 -69205510 + MSTC LTR MaLR 96 428 0 183 42 0 0 chrX 93394428 93394452 -69205478 + (TCTCTG)n Simple_repeat Simple_repeat 5 28 0 242 203 31 0 chrX 93394458 93394586 -69205344 + (TA)n Simple_repeat Simple_repeat 2 133 0 232 250 9 111 chrX 93394589 93394697 -69205233 - MLT1K LTR MaLR -158 430 334 373 241 0 0 chrX 93394779 93394866 -69205064 - L1MC/D LINE L1 -2511 5531 5445 405 0 0 0 chrX 93394866 93394911 -69205019 + (TA)n Simple_repeat Simple_repeat 1 45 0 365 308 42 0 chrX 93394975 93395118 -69204812 - L1MC/D LINE L1 -2275 3871 3723 257 310 0 0 chrX 93396539 93396626 -69203304 - L1MC4 LINE L1 -1339 6703 6617 * 259 266 0 53 chrX 93396565 93396659 -69203271 + L1MC4 LINE L1 6614 6702 -1340 1670 183 118 11 chrX 93396741 93397097 -69202833 + MSTD LTR MaLR 1 394 -2 1900 109 112 40 chrX 93397640 93397988 -69201942 + THE1C LTR MaLR 1 373 -2 339 156 0 65 chrX 93398240 93398317 -69201613 + MER94 DNA DNA 1 72 -62 1080 285 101 41 chrX 93398628 93399161 -69200769 - HAL1 LINE L1 -1865 642 78 7508 189 26 58 chrX 93399182 93401093 -69198837 - L1MC2 LINE L1 -11 6333 4580 2359 59 0 0 chrX 93401093 93401380 -69198550 - AluY SINE Alu -8 303 17 7508 189 26 58 chrX 93401380 93402796 -69197134 - L1MC2 LINE L1 -1764 4580 3120 1254 177 88 8 chrX 93402868 93403117 -69196813 - LTR48B LTR ERV1 -375 269 1 375 243 9 9 chrX 93403117 93403228 -69196702 - L1MC2 LINE L1 -3127 3019 2909 770 123 16 0 chrX 93403235 93403357 -69196573 - AluSg/x SINE Alu -1 311 188 601 213 12 6 chrX 93403365 93403525 -69196405 - L1MC2 LINE L1 -3243 2903 2743 * 7199 181 22 3 chrX 93403521 93405124 -69194806 + L1M1 LINE L1 3357 4994 -2571 491 270 33 19 chrX 93405131 93405346 -69194584 - L1M4 LINE L1 -2206 3940 3723 32 0 0 0 chrX 93405397 93405429 -69194501 + AT_rich Low_complexity Low_complexity 1 32 0 316 258 56 17 chrX 93405429 93405450 -69194480 - L1P LINE L1 -2440 3706 3687 7333 39 0 2 chrX 93405450 93406778 -69193152 - L1PA5 LINE L1 -2 6152 4824 316 258 56 17 chrX 93406778 93406901 -69193029 - L1P LINE L1 -2459 3687 3555 935 273 26 8 chrX 93406913 93407180 -69192750 - MLT1E2 LTR MaLR 0 626 355 320 162 95 76 chrX 93407193 93407298 -69192632 - MLT1E2 LTR MaLR -517 109 3 268 309 72 5 chrX 93407298 93407492 -69192438 - L1M4 LINE L1 -2596 3786 3580 12034 173 48 5 chrX 93407504 93410370 -69189560 - L1PA16 LINE L1 -9 7595 4583 315 0 0 0 chrX 93410370 93410405 -69189525 + (TG)n Simple_repeat Simple_repeat 2 36 0 12034 173 48 5 chrX 93410405 93410775 -69189155 - L1PA16 LINE L1 -3021 4583 4230 5785 238 31 5 chrX 93410790 93412419 -69187511 - L1PA16 LINE L1 -3452 4132 2471 1929 243 9 20 chrX 93412442 93413061 -69186869 - L1PA16 LINE L1 -5871 1710 1073 4081 223 10 14 chrX 93413093 93413974 -69185956 - L1M4 LINE L1 -2940 3442 2563 1903 148 0 0 chrX 93413974 93414291 -69185639 + AluSx SINE Alu 1 317 0 4081 223 10 14 chrX 93414291 93414414 -69185516 - L1M4 LINE L1 -3819 2563 2441 15268 108 6 3 chrX 93414416 93417501 -69182429 - L1PA7 LINE L1 -3 6466 3376 2605 132 42 38 chrX 93417501 93417948 -69181982 - L1PA7 LINE L1 -6011 450 2 2264 236 47 25 chrX 93417961 93418675 -69181255 - L1M4 LINE L1 -4520 1783 1047 1057 260 4 30 chrX 93418796 93419065 -69180865 + LTR53 LTR ERVL 258 519 0 262 267 0 0 chrX 93419111 93419171 -69180759 - L1ME LINE L1 -572 5661 5602 276 283 48 40 chrX 93419177 93419449 -69180481 - L1ME LINE L1 -4078 2318 2045 396 311 7 0 chrX 93419503 93419654 -69180276 - L1ME LINE L1 -302 5819 5668 311 133 67 0 chrX 93419695 93419755 -69180175 - L1MB1 LINE L1 -1 6167 6104 1310 181 8 0 chrX 93419756 93419994 -69179936 + L1MB1 LINE L1 5870 6109 -59 532 333 157 33 chrX 93420561 93421198 -69178732 - L2 LINE L2 -1890 1424 709 29 28 0 0 chrX 93421535 93421571 -69178359 + AT_rich Low_complexity Low_complexity 1 36 0 21 89 0 0 chrX 93422057 93422113 -69177817 + AT_rich Low_complexity Low_complexity 1 56 0 6917 188 16 11 chrX 93423871 93423892 -69176038 - L1MA9 LINE L1 -46 6266 6247 2272 101 0 7 chrX 93423892 93424189 -69175741 - AluSq SINE Alu -18 295 1 6917 188 16 11 chrX 93424189 93426606 -69173324 - L1MA9 LINE L1 -65 6247 3809 709 171 1 2 chrX 93426601 93426840 -69173090 - L1P LINE L1 -1245 4901 3693 * 182 302 16 16 chrX 93426949 93427012 -69172918 + MIR SINE MIR 92 154 -108 23 33 0 0 chrX 93427827 93427857 -69172073 + AT_rich Low_complexity Low_complexity 1 30 0 1160 170 14 5 chrX 93427857 93428069 -69171861 - L1PB3 LINE L1 -1 6153 5940 2624 222 14 3 chrX 93428069 93428735 -69171195 - L1PB3 LINE L1 -776 5370 4698 2428 86 0 6 chrX 93428738 93429051 -69170879 - AluY SINE Alu 0 311 1 14018 219 16 7 chrX 93429067 93433572 -69166358 - L1PB1 LINE L1 -5 6146 1630 731 241 0 0 chrX 93433624 93433811 -69166119 - L1PB3 LINE L1 -1463 4683 4497 221 56 0 28 chrX 93433815 93433851 -69166079 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 43669 41 5 1 chrX 93433851 93439959 -69159971 - L1PA3 LINE L1 -24 6131 7 2226 194 39 0 chrX 93439964 93440449 -69159481 - L1PB3 LINE L1 -1628 4518 4015 1371 220 0 0 chrX 93440465 93440720 -69159210 - AluJb SINE Alu -16 296 42 216 364 0 15 chrX 93440817 93440883 -69159047 - L2 LINE L2 -4 3268 3204 1137 222 15 110 chrX 93442905 93443306 -69156624 + MLT1A2 LTR MaLR 1 363 -11 2937 210 123 59 chrX 93443321 93443479 -69156451 + MLT1A2-int LTR MaLR 5 151 -1220 2081 109 0 0 chrX 93443479 93443754 -69156176 + AluSq SINE Alu 37 311 -2 2937 210 123 59 chrX 93443754 93444753 -69155177 + MLT1A2-int LTR MaLR 151 1250 -121 982 217 13 41 chrX 93444760 93445005 -69154925 + MLT1A2 LTR MaLR 137 505 0 1817 165 108 0 chrX 93445078 93445430 -69154500 + MLT1B LTR MaLR 1 390 0 2123 122 20 18 chrX 93446029 93446619 -69153311 - LTR8 LTR ERV1 0 691 1 25 65 0 0 chrX 93446721 93446767 -69153163 + AT_rich Low_complexity Low_complexity 1 46 0 2947 245 57 31 chrX 93447169 93447474 -69152456 + L1M4 LINE L1 5 301 -6241 4228 37 10 0 chrX 93447474 93447986 -69151944 - L1PA5 LINE L1 0 6154 5638 2947 245 57 31 chrX 93447986 93448524 -69151406 + L1M4 LINE L1 301 870 -5672 669 255 26 56 chrX 93448531 93448762 -69151168 - L1M4 LINE L1 -2007 4139 3916 * 2843 178 59 28 chrX 93448761 93449401 -69150529 + L1MB7 LINE L1 5509 6168 -16 180 179 0 0 chrX 93449496 93449535 -69150395 + (TA)n Simple_repeat Simple_repeat 1 39 0 330 98 20 0 chrX 93449896 93449947 -69149983 + tRNA-Arg-AGG tRNA tRNA 2 53 -23 4074 114 41 5 chrX 93450264 93450894 -69149036 + MER39B LTR ERV1 1 653 0 25100 55 9 8 chrX 93450976 93455137 -69144793 + L1PA5 LINE L1 1988 6152 -2 21 0 0 0 chrX 93455251 93455272 -69144658 + AT_rich Low_complexity Low_complexity 1 21 0 247 313 81 55 chrX 93455672 93456182 -69143748 + L1M4 LINE L1 4087 4582 -2062 1985 175 19 22 chrX 93456182 93456548 -69143382 - MLT1A1 LTR MaLR 0 365 1 247 313 81 55 chrX 93456548 93456711 -69143219 + L1M4 LINE L1 4582 4739 -1905 1076 229 9 5 chrX 93456711 93456934 -69142996 - MER58A DNA MER1_type 0 224 1 247 313 81 55 chrX 93456934 93456956 -69142974 + L1M4 LINE L1 4739 4759 -1885 799 153 15 0 chrX 93456956 93457087 -69142843 + FLAM_C SINE Alu 1 133 0 247 313 81 55 chrX 93457087 93457344 -69142586 + L1M4 LINE L1 4759 5066 -1578 331 302 9 9 chrX 93457494 93457600 -69142330 - MLT1L LTR MaLR -13 602 497 1178 172 0 60 chrX 93457652 93457884 -69142046 + MER20 DNA MER1_type 1 218 -1 372 244 14 68 chrX 93458096 93458317 -69141613 - L1M4 LINE L1 -3728 2418 2210 2374 82 3 0 chrX 93458611 93458903 -69141027 + AluSp SINE Alu 1 293 -20 7511 30 2 0 chrX 93459058 93460344 -69139586 - L1PA4 LINE L1 -3 6152 4865 338 308 96 8 chrX 93460426 93460676 -69139254 + L1ME4a LINE L1 5612 5883 -238 251 288 32 8 chrX 93460688 93460813 -69139117 + L1ME4a LINE L1 5951 6078 -43 1610 176 30 37 chrX 93460820 93461115 -69138815 - AluJo SINE Alu -19 293 1 363 335 56 35 chrX 93462195 93462472 -69137458 + L2 LINE L2 2771 3053 -219 527 311 60 13 chrX 93462543 93462778 -69137152 + L2 LINE L2 2120 2365 -949 684 313 21 21 chrX 93463023 93463266 -69136664 + MIR SINE MIR 20 262 0 4206 132 27 24 chrX 93465054 93465752 -69134178 + MER50 LTR ERV1 12 711 -23 2969 179 36 64 chrX 93466300 93467048 -69132882 - LTR8A LTR ERV1 0 727 1 1030 258 136 143 chrX 93467259 93468466 -69131464 + L3 LINE CR1 38 1235 -342 1911 211 54 77 chrX 93468527 93468661 -69131269 - L1MC5 LINE L1 -44 7917 7782 2085 108 27 7 chrX 93468661 93468956 -69130974 - AluSp SINE Alu -11 302 2 1911 211 54 77 chrX 93468956 93469098 -69130832 - L1MC5 LINE L1 -179 7782 7638 2237 103 0 0 chrX 93469098 93469389 -69130541 + AluSg SINE Alu 1 291 -19 1911 211 54 77 chrX 93469389 93469961 -69129969 - L1MC5 LINE L1 -323 7638 7087 9700 69 12 1 chrX 93470119 93472259 -69127671 + L1PA7 LINE L1 3985 6146 -8 1393 112 28 16 chrX 93472267 93472518 -69127412 - L1MA8 LINE L1 -10 6281 6028 570 327 86 19 chrX 93472539 93472808 -69127122 + L3 LINE CR1 1289 1575 -2 324 127 0 0 chrX 93473355 93473410 -69126520 - MLT2B2 LTR ERVL -2 518 464 195 204 0 0 chrX 93473413 93473462 -69126468 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 2281 180 16 68 chrX 93473473 93473972 -69125958 - MLT2B2 LTR ERVL -42 473 1 10327 152 31 5 chrX 93473972 93475795 -69124135 - ERVL-B2 LTR ERVL -7 5757 3887 6643 140 28 5 chrX 93475801 93476903 -69123027 - ERVL-B2 LTR ERVL -2031 3733 2607 4223 187 17 20 chrX 93476903 93477733 -69122197 - ERVL-B2 LTR ERVL -4209 1555 729 1107 186 0 0 chrX 93477733 93477921 -69122009 - MLT2B2 LTR ERVL -325 190 3 207 182 0 0 chrX 93477921 93477954 -69121976 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 306 202 48 48 chrX 93478139 93478223 -69121707 + L2 LINE L2 2453 2536 -778 1189 147 6 0 chrX 93478224 93478394 -69121536 + AluSq SINE Alu 1 171 -142 729 98 43 110 chrX 93478616 93478780 -69121150 - L1MA3 LINE L1 -1 6304 6152 587 211 7 0 chrX 93478782 93478924 -69121006 - L1 LINE L1 -3258 4307 4165 * 6027 197 28 4 chrX 93478922 93480099 -69119831 - L1 LINE L1 -6351 1214 10 644 235 36 30 chrX 93480099 93480265 -69119665 + L2 LINE L2 3147 3313 0 291 284 37 0 chrX 93480345 93480426 -69119504 + MIR SINE MIR 37 120 -142 2622 89 0 11 chrX 93480942 93481301 -69118629 + THE1A LTR MaLR 1 355 0 9479 92 2 0 chrX 93481337 93482643 -69117287 + THE1A-int LTR MaLR 272 1580 0 2701 65 11 6 chrX 93482643 93482996 -69116934 + THE1A LTR MaLR 1 355 0 1173 269 62 0 chrX 93482997 93483387 -69116543 + MARNA DNA Mariner 166 579 -7 420 249 77 47 chrX 93484129 93484298 -69115632 + MER69A DNA AcHobo 1 174 -3 302 288 186 7 chrX 93484533 93484678 -69115252 + MIR SINE MIR 21 187 -68 273 370 74 19 chrX 93485628 93485797 -69114133 + MIR SINE MIR 31 204 -58 22 35 0 0 chrX 93486398 93486427 -69113503 + AT_rich Low_complexity Low_complexity 1 29 0 2007 157 0 0 chrX 93486845 93487132 -69112798 - AluSx SINE Alu -23 289 3 1833 121 81 6 chrX 93488360 93488683 -69111247 + THE1C LTR MaLR 1 347 -28 28786 116 14 57 chrX 93488683 93494709 -69105221 - L1PA7 LINE L1 -3 6151 434 189 0 0 0 chrX 93494709 93494730 -69105200 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 28786 116 14 57 chrX 93494730 93495136 -69104794 - L1PA7 LINE L1 -5720 434 12 274 128 0 21 chrX 93495136 93495183 -69104747 + THE1C LTR MaLR 382 427 -1 9737 128 38 15 chrX 93495184 93496729 -69103201 + THE1C-int LTR MaLR 1 1580 0 1702 128 125 6 chrX 93496729 93497057 -69102873 + THE1C LTR MaLR 1 367 -8 723 320 9 4 chrX 93497789 93498020 -69101910 + MIR SINE MIR 24 255 -7 1370 206 10 37 chrX 93498150 93498446 -69101484 - AluJb SINE Alu -24 288 1 259 307 35 26 chrX 93499262 93499376 -69100554 - L1ME3A LINE L1 -90 6080 5966 523 259 60 7 chrX 93499434 93499675 -69100255 - L1ME3A LINE L1 -213 5951 5705 25 0 0 0 chrX 93500222 93500247 -69099683 + AT_rich Low_complexity Low_complexity 1 25 0 17256 168 30 12 chrX 93500248 93502155 -69097775 - L1MA1 LINE L1 -5 7716 5844 2218 119 3 3 chrX 93502155 93502465 -69097465 - AluSx SINE Alu -2 310 1 17256 168 30 12 chrX 93502465 93508126 -69091804 - L1MA1 LINE L1 -1877 5844 6 413 244 128 33 chrX 93508304 93508484 -69091446 - L1ME3A LINE L1 -489 5695 5499 616 114 0 0 chrX 93508491 93508579 -69091351 - AluSg/x SINE Alu -15 297 210 5877 167 21 43 chrX 93508582 93510524 -69089406 - L1MA9 LINE L1 -416 5953 4043 1593 153 8 0 chrX 93510518 93510779 -69089151 - L1MA9 LINE L1 -5710 494 232 * 1921 120 7 17 chrX 93510804 93511104 -69088826 - L1PA8 LINE L1 -2 6170 5874 706 218 0 0 chrX 93511104 93511251 -69088679 - L1M4c LINE L1 -4618 1766 1620 465 171 0 57 chrX 93511251 93511356 -69088574 + Tigger1 DNA MER2_type 1 99 -2319 * 1348 165 4 0 chrX 93511349 93511592 -69088338 + Tigger1 DNA MER2_type 1823 2066 -352 2047 88 4 0 chrX 93511602 93511865 -69088065 - AluSp SINE Alu 0 313 50 287 206 0 16 chrX 93511865 93511928 -69088002 + L1PBa LINE L1 144 205 -6658 * 3959 259 56 82 chrX 93511923 93513402 -69086528 - L1PA12 LINE L1 -5013 2571 9 21 0 0 0 chrX 93513622 93513643 -69086287 + AT_rich Low_complexity Low_complexity 1 21 0 274 246 118 11 chrX 93514028 93514236 -69085694 - L1MC/D LINE L1 -602 5564 5383 418 240 39 11 chrX 93514240 93514419 -69085511 - L1MC/D LINE L1 -3106 3040 2857 3086 88 35 7 chrX 93514427 93514818 -69085112 + MLT2A1 LTR ERVL 1 407 -37 506 104 10 0 chrX 93514818 93514914 -69085016 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 3086 88 35 7 chrX 93514914 93514954 -69084976 + MLT2A1 LTR ERVL 407 444 0 29 0 0 0 chrX 93515194 93515223 -69084707 + AT_rich Low_complexity Low_complexity 1 29 0 597 361 47 27 chrX 93515632 93516036 -69083894 - L2 LINE L2 -1084 2230 1819 368 330 10 67 chrX 93516281 93516490 -69083440 + MIR SINE MIR 20 216 -46 420 271 41 0 chrX 93517113 93517235 -69082695 + MER20B DNA MER1_type 47 173 -610 311 250 134 18 chrX 93517391 93517503 -69082427 + L2 LINE L2 3189 3313 0 415 314 49 43 chrX 93517564 93517749 -69082181 + MIR3 SINE MIR 12 197 -11 489 250 25 103 chrX 93518179 93518348 -69081582 + MER5A DNA MER1_type 2 154 -35 776 188 5 127 chrX 93518348 93518545 -69081385 + MER45A DNA AcHobo 5 177 -1 489 250 25 103 chrX 93518545 93518579 -69081351 + MER5A DNA MER1_type 154 189 0 23520 32 3 0 chrX 93518683 93522314 -69077616 - L1PA3 LINE L1 -1 6154 2519 262 336 9 18 chrX 93522329 93522442 -69077488 - L2 LINE L2 -654 2660 2549 1965 226 153 43 chrX 93525907 93526574 -69073356 - LTR68 LTR ERV1 0 740 1 692 228 94 17 chrX 93526770 93526950 -69072980 + MLT1A1 LTR MaLR 172 365 0 420 302 20 7 chrX 93526953 93527102 -69072828 + LTR16B LTR ERVL 314 464 0 2122 161 3 9 chrX 93527239 93527587 -69072343 - MLT1A1 LTR MaLR 0 365 20 1551 174 33 4 chrX 93527587 93527863 -69072067 - MER61D LTR ERV1 -2 499 216 624 58 5 271 chrX 93527918 93528106 -69071824 - MER61B LTR ERV1 -287 138 1 247 300 75 25 chrX 93528139 93528259 -69071671 + MLT1L LTR MaLR 482 607 -8 709 264 165 0 chrX 93528338 93528550 -69071380 + MIR SINE MIR 14 260 -2 258 206 22 22 chrX 93528570 93528662 -69071268 + (TTA)n Simple_repeat Simple_repeat 3 94 0 1481 200 3 39 chrX 93529510 93529726 -69070204 + L1PB4 LINE L1 5831 6032 -124 2092 208 65 25 chrX 93529726 93530293 -69069637 + LTR49 LTR ERV1 3 592 -3 1481 200 3 39 chrX 93530293 93530411 -69069519 + L1PB4 LINE L1 6032 6153 -3 2331 88 0 3 chrX 93530578 93530872 -69069058 - AluSg SINE Alu -17 293 1 1508 128 25 12 chrX 93530924 93531167 -69068763 - L1PA16 LINE L1 -2 6164 5919 1146 244 92 15 chrX 93531190 93531870 -69068060 - L1MD3 LINE L1 -15 7980 7147 365 293 109 8 chrX 93532767 93533006 -69066924 - L1ME LINE L1 -298 5823 5561 1126 172 5 5 chrX 93533024 93533216 -69066714 + LTR8A LTR ERV1 1 192 -535 1704 139 49 40 chrX 93533227 93533551 -69066379 + LTR8A LTR ERV1 401 727 0 23 0 0 0 chrX 93533643 93533666 -69066264 + AT_rich Low_complexity Low_complexity 1 23 0 7769 20 0 0 chrX 93533670 93534768 -69065162 - L1PA3 LINE L1 0 6155 5058 233 279 54 0 chrX 93534770 93534899 -69065031 - L1P LINE L1 -767 5389 5254 311 334 42 13 chrX 93535106 93535308 -69064622 - L1ME LINE L1 -1854 4292 4085 234 191 0 0 chrX 93536538 93536585 -69063345 + CT-rich Low_complexity Low_complexity 3 49 0 765 99 6 0 chrX 93536618 93536740 -69063190 + L1PA10 LINE L1 6023 6164 -4 210 306 0 0 chrX 93536866 93536928 -69063002 + GA-rich Low_complexity Low_complexity 1 62 0 258 32 0 0 chrX 93536928 93536959 -69062971 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 424 270 9 27 chrX 93537063 93537174 -69062756 + MIR SINE MIR 43 151 -57 615 260 0 0 chrX 93537188 93537311 -69062619 + L2 LINE L2 3189 3311 -2 261 293 0 103 chrX 93537535 93537651 -69062279 + MIR SINE MIR 40 143 -65 188 250 19 19 chrX 93537693 93537745 -69062185 - L2 LINE L2 0 3272 3221 24 32 0 0 chrX 93537895 93537926 -69062004 + AT_rich Low_complexity Low_complexity 1 31 0 247 268 78 67 chrX 93539617 93539796 -69060134 + L2 LINE L2 1703 1883 -1431 1108 317 53 0 chrX 93539796 93540134 -69059796 + MLT1J LTR MaLR 156 511 0 186 329 151 26 chrX 93540137 93540289 -69059641 + L2 LINE L2 2181 2351 -963 232 352 58 55 chrX 93540374 93540701 -69059229 + L2 LINE L2 2518 2845 -469 237 282 12 71 chrX 93540987 93541072 -69058858 + L2 LINE L2 3193 3272 0 410 340 20 15 chrX 93541123 93541323 -69058607 - L2 LINE L2 -787 2527 2327 279 307 102 11 chrX 93542119 93542207 -69057723 - L2 LINE L2 -36 3236 3141 379 309 43 33 chrX 93542913 93543076 -69056854 - MIR SINE MIR -45 163 1 1008 126 21 46 chrX 93544152 93544334 -69055596 - MER39B LTR ERV1 0 629 465 2801 116 162 24 chrX 93544334 93544870 -69055060 - MER4B LTR ERV1 0 610 1 1008 126 21 46 chrX 93544870 93544884 -69055046 - MER39B LTR ERV1 -164 465 452 734 206 21 0 chrX 93546106 93546247 -69053683 - LTR1B LTR ERV1 0 826 683 * 834 164 25 6 chrX 93546239 93546398 -69053532 + PABL_B LTR ERV1 506 667 0 3006 152 24 117 chrX 93546428 93546619 -69053311 + LTR8 LTR ERV1 1 208 -483 339 33 67 0 chrX 93546619 93546679 -69053251 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 3006 152 24 117 chrX 93546679 93547249 -69052681 + LTR8 LTR ERV1 208 691 0 1736 165 0 7 chrX 93547249 93547528 -69052402 + HUERS-P1 LTR ERV1 1 277 -5986 553 282 8 8 chrX 93547714 93547845 -69052085 - MER5B DNA MER1_type 0 178 48 592 316 52 4 chrX 93547848 93548120 -69051810 + L1M4 LINE L1 3695 3979 -2167 230 307 44 36 chrX 93548307 93548532 -69051398 + L1M4 LINE L1 4240 4466 -1680 2416 191 55 102 chrX 93548599 93549327 -69050603 + LTR8A LTR ERV1 34 727 0 296 252 56 71 chrX 93549521 93549787 -69050143 + L1M4 LINE L1 4786 5047 -1099 16923 142 12 10 chrX 93550035 93550388 -69049542 - Tigger2 DNA MER2_type 0 2718 2367 2514 109 0 11 chrX 93550388 93550756 -69049174 - THE1B LTR MaLR 0 364 1 16923 142 12 10 chrX 93550756 93553114 -69046816 - Tigger2 DNA MER2_type -351 2367 1 635 304 68 5 chrX 93553617 93553837 -69046093 - MIR SINE MIR -7 255 22 378 0 0 0 chrX 93554000 93554042 -69045888 + (CA)n Simple_repeat Simple_repeat 2 43 0 327 49 0 0 chrX 93556175 93556216 -69043714 + (TC)n Simple_repeat Simple_repeat 2 42 0 264 59 0 0 chrX 93556215 93556249 -69043681 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 1766 148 3 0 chrX 93556657 93556960 -69042970 - L1MA5 LINE L1 0 6300 5997 331 368 15 23 chrX 93557012 93557145 -69042785 + MIR3 SINE MIR 23 154 -54 2293 33 0 0 chrX 93557712 93557987 -69041943 - L1PA2 LINE L1 0 6155 5881 938 50 33 0 chrX 93557987 93558108 -69041822 + L1PA3 LINE L1 5797 5921 -234 598 288 45 61 chrX 93558617 93558815 -69041115 - L1ME2 LINE L1 -210 5954 5754 2620 136 34 10 chrX 93558815 93559233 -69040697 + MSTA LTR MaLR 1 428 0 598 288 45 61 chrX 93559233 93559506 -69040424 - L1ME2 LINE L1 -410 5754 5491 700 246 107 57 chrX 93559563 93560007 -69039923 - L1ME2 LINE L1 -2575 3571 3085 2044 149 7 0 chrX 93560007 93560316 -69039614 - AluSx SINE Alu -1 311 1 700 246 107 57 chrX 93560316 93560500 -69039430 - L1ME2 LINE L1 -3061 3085 2912 1022 215 5 0 chrX 93561787 93561992 -69037938 + MLT2B1 LTR ERVL 1 206 -314 333 47 0 0 chrX 93562000 93562043 -69037887 + (CA)n Simple_repeat Simple_repeat 1 43 0 243 135 0 0 chrX 93562046 93562083 -69037847 + MLT2B1 LTR ERVL 357 393 -4 5367 156 24 85 chrX 93562461 93564436 -69035494 - L1PA15 LINE L1 0 6165 4295 376 160 0 43 chrX 93564838 93564932 -69034998 - L1MB8 LINE L1 0 6178 6089 5880 193 34 23 chrX 93564946 93567219 -69032711 - L1MB4 LINE L1 -6 6174 3865 1401 232 3 10 chrX 93567282 93567579 -69032351 - AluJo SINE Alu -13 299 5 394 303 94 56 chrX 93567593 93567953 -69031977 - L1 LINE L1 -1011 5135 4762 560 306 126 68 chrX 93568059 93568471 -69031459 + MLT1H LTR MaLR 114 549 0 2370 84 0 0 chrX 93569713 93570012 -69029918 + AluSc SINE Alu 1 299 -10 186 250 0 23 chrX 93570532 93570576 -69029354 + MIR SINE MIR 216 258 -4 2218 145 57 8 chrX 93571682 93572054 -69027876 - MSTA LTR MaLR -38 390 1 458 256 113 6 chrX 93572965 93573125 -69026805 + MIR SINE MIR 26 202 -60 1949 140 104 3 chrX 93573839 93574167 -69025763 + MER46B DNA MER2_type 1 236 0 212 0 36 0 chrX 93574598 93574626 -69025304 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 181 283 19 0 chrX 93575396 93575449 -69024481 + MIR SINE MIR 84 137 -71 1506 163 37 19 chrX 93576743 93577013 -69022917 - AluJb SINE Alu -37 275 1 369 43 0 0 chrX 93577647 93577694 -69022236 + (TG)n Simple_repeat Simple_repeat 2 48 0 375 299 19 0 chrX 93577805 93577912 -69022018 + L2 LINE L2 2215 2323 -991 254 384 114 17 chrX 93577960 93578197 -69021733 + L2 LINE L2 2491 2750 -564 381 299 56 90 chrX 93578207 93578585 -69021345 + HAL1 LINE L1 25 389 -2118 198 276 67 57 chrX 93579397 93579502 -69020428 - MIR SINE MIR -75 187 82 2032 119 3 0 chrX 93580766 93581104 -69018826 + AluSq SINE Alu 1 339 0 423 298 16 3 chrX 93581203 93581386 -69018544 - MIR SINE MIR -7 255 13 674 174 58 17 chrX 93582016 93582188 -69017742 + MER53 DNA DNA 1 179 -10 6266 157 15 6 chrX 93585913 93588041 -69011889 - L1PB2 LINE L1 -7 6860 4714 2244 59 3 0 chrX 93588046 93588333 -69011597 - L1PA7 LINE L1 -8 6146 5859 5179 49 3 0 chrX 93588333 93589169 -69010761 + L1PA7 LINE L1 5051 5888 -266 * 7790 184 53 29 chrX 93589164 93591176 -69008754 - L1PB2 LINE L1 -2135 4727 2671 6661 126 8 16 chrX 93591564 93592957 -69006973 + L1MA2 LINE L1 4922 6304 0 22 0 0 0 chrX 93592957 93592979 -69006951 + AT_rich Low_complexity Low_complexity 1 22 0 254 220 20 0 chrX 93593440 93593490 -69006440 - L2 LINE L2 -5 3308 3258 7774 187 22 22 chrX 93593523 93593998 -69005932 - L1MA9 LINE L1 -10 6302 5828 1610 208 10 0 chrX 93593998 93594296 -69005634 - AluJo SINE Alu -11 301 1 7774 187 22 22 chrX 93594296 93596384 -69003546 - L1MA9 LINE L1 -484 5828 3734 4156 250 29 21 chrX 93596373 93597671 -69002259 + L1M4 LINE L1 2926 4233 -1913 * 1536 235 34 22 chrX 93597745 93598157 -69001773 + MLT1C LTR MaLR 51 467 0 4096 219 90 13 chrX 93598158 93598586 -69001344 + MLT1C-int LTR MaLR 2 396 -975 1591 230 41 79 chrX 93598586 93599222 -69000708 + LTR9 LTR ERV1 1 612 0 4096 219 90 13 chrX 93599222 93599856 -69000074 + MLT1C-int LTR MaLR 396 1264 -107 593 210 99 6 chrX 93599841 93600022 -68999908 + L1M4 LINE L1 5133 5330 -816 * 423 97 32 43 chrX 93600026 93600119 -68999811 + L1MB7 LINE L1 6093 6184 0 492 68 0 14 chrX 93600316 93600389 -68999541 - L1PA11 LINE L1 0 6174 6103 2286 205 29 80 chrX 93600389 93600964 -68998966 + L1MC4 LINE L1 5080 5683 -463 371 22 0 0 chrX 93600964 93601009 -68998921 + MADE1 DNA Mariner 1 45 -35 2286 205 29 80 chrX 93601009 93601807 -68998123 + L1MC4 LINE L1 5682 5400 -746 1819 176 10 0 chrX 93601445 93601746 -68998184 + AluJb SINE Alu 3 306 -6 233 184 135 99 chrX 93601746 93601858 -68998072 + L1MA10 LINE L1 6213 6332 -2 228 287 110 29 chrX 93602538 93602674 -68997256 - MIR SINE MIR -70 192 46 2362 67 3 10 chrX 93603347 93603660 -68996270 - AluY SINE Alu 0 311 1 1100 281 85 18 chrX 93604924 93605372 -68994558 - MLT1L LTR MaLR -33 582 105 1813 214 100 120 chrX 93605571 93606413 -68993517 + LTR28 LTR ERV1 1 1019 -1 648 214 48 21 chrX 93606506 93606693 -68993237 - L1ME1 LINE L1 -6 6229 6038 * 1215 263 42 27 chrX 93606690 93607225 -68992705 - L1ME1 LINE L1 -586 5649 5110 588 241 103 20 chrX 93607225 93607420 -68992510 - MER58C DNA MER1_type -4 211 1 1215 263 42 27 chrX 93607420 93607522 -68992408 - L1ME1 LINE L1 -1125 5110 5011 3792 147 149 14 chrX 93607537 93608331 -68991599 - Tigger3b DNA MER2_type -5 1226 326 393 223 209 20 chrX 93608431 93608579 -68991351 + L1M4 LINE L1 3926 4101 -2045 333 372 77 16 chrX 93608634 93608817 -68991113 - L1ME LINE L1 -5607 463 270 1635 265 108 14 chrX 93608847 93610077 -68989853 - L1ME1 LINE L1 -3309 2906 1485 1700 304 92 17 chrX 93610108 93611255 -68988675 - L1ME1 LINE L1 -5145 1251 18 195 42 0 0 chrX 93612424 93612448 -68987482 + (CA)n Simple_repeat Simple_repeat 2 25 0 809 265 0 5 chrX 93612455 93612640 -68987290 - MIR SINE MIR -15 247 64 504 269 35 98 chrX 93612720 93612976 -68986954 - MIR SINE MIR -10 252 13 212 163 47 0 chrX 93613713 93613756 -68986174 + T-rich Low_complexity Low_complexity 3 47 0 251 214 76 76 chrX 93615265 93615396 -68984534 + L2 LINE L2 3118 3248 -65 14752 211 18 12 chrX 93615534 93620560 -68979370 - L1PB3 LINE L1 -6 6205 1168 5739 179 8 20 chrX 93620583 93621642 -68978288 - L1PB3 LINE L1 -5146 1058 13 4294 284 31 23 chrX 93621615 93623242 -68976688 - L1PBa LINE L1 -5220 1643 3 * 4228 86 7 5 chrX 93623503 93624094 -68975836 + L1PA12 LINE L1 5577 6168 0 259 266 65 81 chrX 93624952 93625336 -68974594 + HAL1 LINE L1 975 1352 -1155 2761 181 18 74 chrX 93625380 93626044 -68973886 - LTR8 LTR ERV1 0 691 65 8676 226 28 44 chrX 93626045 93626555 -68973375 - L1MA4 LINE L1 -279 6203 5686 708 224 0 0 chrX 93626555 93626680 -68973250 - FLAM_A SINE Alu -8 125 1 8676 226 28 44 chrX 93626680 93626744 -68973186 - L1MA4 LINE L1 -796 5686 5623 479 0 0 53 chrX 93626744 93626819 -68973111 + (TA)n Simple_repeat Simple_repeat 1 71 0 1576 213 7 0 chrX 93626825 93627107 -68972823 - AluJo SINE Alu -28 284 1 8676 226 28 44 chrX 93627107 93627301 -68972629 - L1MA4 LINE L1 -864 5618 5422 207 0 0 0 chrX 93627301 93627324 -68972606 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8676 226 28 44 chrX 93627324 93628611 -68971319 - L1MA4 LINE L1 -1060 5422 4116 297 0 0 0 chrX 93628611 93628644 -68971286 + (TA)n Simple_repeat Simple_repeat 1 33 0 8676 226 28 44 chrX 93628644 93628951 -68970979 - L1MA4 LINE L1 -2366 4116 3806 279 0 0 0 chrX 93628951 93628982 -68970948 + (TG)n Simple_repeat Simple_repeat 2 32 0 8676 226 28 44 chrX 93628982 93629133 -68970797 - L1MA4 LINE L1 -2676 3806 3654 10148 24 3 0 chrX 93629133 93631100 -68968830 - L1PA2 LINE L1 0 6155 4185 8676 226 28 44 chrX 93631100 93632785 -68967145 - L1MA4 LINE L1 -2828 3654 2108 1621 203 0 7 chrX 93632804 93633100 -68966830 + AluJo SINE Alu 2 295 -17 1515 120 29 4 chrX 93633130 93633404 -68966526 - L1MA4 LINE L1 -4095 1233 953 1117 52 0 0 chrX 93633404 93633539 -68966391 - L1PA7 LINE L1 -500 5654 5520 3878 68 2 4 chrX 93633539 93634042 -68965888 + L1PA7 LINE L1 5647 6148 -6 4743 188 18 36 chrX 93634047 93635012 -68964918 - L1MA4 LINE L1 -4366 962 16 23 33 0 0 chrX 93635196 93635226 -68964704 + AT_rich Low_complexity Low_complexity 1 30 0 1669 157 22 0 chrX 93635226 93635493 -68964437 - AluJb SINE Alu -26 286 14 25 31 0 0 chrX 93635813 93635845 -68964085 + AT_rich Low_complexity Low_complexity 1 32 0 2346 100 0 0 chrX 93636176 93636475 -68963455 + AluSg SINE Alu 1 299 -11 24 0 0 0 chrX 93636610 93636634 -68963296 + AT_rich Low_complexity Low_complexity 1 24 0 2382 80 0 7 chrX 93637798 93638098 -68961832 + AluSc SINE Alu 1 298 -11 2368 95 3 0 chrX 93639348 93639654 -68960276 - AluSp SINE Alu -6 307 1 449 233 17 52 chrX 93640999 93641171 -68958759 - HAL1b LINE L1 0 1348 1183 249 245 0 0 chrX 93641194 93641243 -68958687 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 233 236 14 0 chrX 93641230 93641302 -68958628 + (TA)n Simple_repeat Simple_repeat 2 74 0 * 388 225 165 46 chrX 93641365 93641528 -68958402 - HAL1b LINE L1 -238 1110 968 2406 197 32 81 chrX 93641528 93642255 -68957675 - LTR8 LTR ERV1 0 691 1 388 225 165 46 chrX 93642255 93642269 -68957661 - HAL1b LINE L1 -380 968 957 3455 154 54 11 chrX 93642269 93642937 -68956993 - LTR34 LTR ERV1 0 699 3 388 225 165 46 chrX 93642937 93643104 -68956826 - HAL1b LINE L1 -391 957 724 * 6999 207 18 11 chrX 93643101 93644697 -68955233 + L1MA1 LINE L1 2328 3934 -2212 6624 24 5 0 chrX 93644697 93645506 -68954424 + L1PA3 LINE L1 2330 3142 -3004 43162 30 21 1 chrX 93645507 93651538 -68948392 + L1HS LINE L1 2 6155 0 207 69 0 0 chrX 93651540 93651569 -68948361 + (A)n Simple_repeat Simple_repeat 1 29 0 18690 31 1 8 chrX 93651569 93654606 -68945324 + L1PA3 LINE L1 3122 6155 0 7256 161 15 7 chrX 93654606 93656388 -68943542 + L1MA1 LINE L1 3912 5700 -602 3168 117 46 8 chrX 93656389 93656909 -68943021 + L1MA1 LINE L1 5763 6302 0 2926 211 200 66 chrX 93657546 93658081 -68941849 - L1MC4 LINE L1 -7 8035 7573 6959 63 5 52 chrX 93658081 93659043 -68940887 + SVA Other Other 433 1324 -62 330 26 0 0 chrX 93659043 93659082 -68940848 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6959 63 5 52 chrX 93659082 93659143 -68940787 + SVA Other Other 1324 1386 0 2926 211 200 66 chrX 93659143 93659777 -68940153 - L1MC4 LINE L1 -469 7573 7025 225 0 0 0 chrX 93659777 93659802 -68940128 + (TG)n Simple_repeat Simple_repeat 1 25 0 2926 211 200 66 chrX 93659802 93660006 -68939924 - L1MC4 LINE L1 -1017 7025 6850 302 45 23 0 chrX 93660006 93660050 -68939880 + (CA)n Simple_repeat Simple_repeat 2 46 0 2926 211 200 66 chrX 93660050 93660111 -68939819 - L1MC4 LINE L1 -1192 6850 6799 450 0 0 0 chrX 93660111 93660161 -68939769 + (TG)n Simple_repeat Simple_repeat 2 51 0 2926 211 200 66 chrX 93660161 93660578 -68939352 - L1MC4 LINE L1 -1243 6799 5907 1663 292 72 36 chrX 93660588 93661012 -68938918 - L1MC4 LINE L1 -801 5345 4938 198 103 0 0 chrX 93661012 93661041 -68938889 + (TA)n Simple_repeat Simple_repeat 1 29 0 1663 292 72 36 chrX 93661041 93662265 -68937665 - L1MC4 LINE L1 -1208 4938 4089 2516 114 8 13 chrX 93662265 93662642 -68937288 - THE1C LTR MaLR 0 375 1 1663 292 72 36 chrX 93662642 93662712 -68937218 - L1MC4 LINE L1 -2057 4089 4023 332 337 99 0 chrX 93662725 93662897 -68937033 - L2 LINE L2 -657 2657 2469 211 340 62 21 chrX 93662972 93663069 -68936861 + MIR SINE MIR 5 105 -157 207 69 0 0 chrX 93663240 93663269 -68936661 + (ATG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chrX 93663836 93663857 -68936073 + AT_rich Low_complexity Low_complexity 1 21 0 374 280 106 53 chrX 93665537 93665902 -68934028 + MLT1K LTR MaLR 168 588 0 31 0 0 0 chrX 93666144 93666175 -68933755 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chrX 93666840 93666872 -68933058 + AT_rich Low_complexity Low_complexity 1 32 0 937 291 114 12 chrX 93668585 93669015 -68930915 - ERVL LTR ERVL -259 5505 5032 2201 191 99 14 chrX 93669015 93669642 -68930288 + L1M3f LINE L1 679 1368 -4069 2291 168 11 5 chrX 93669642 93670077 -68929853 + L1MA4 LINE L1 5861 6298 -2 232 256 67 33 chrX 93670499 93670589 -68929341 + MER5A DNA MER1_type 94 186 -3 31 88 0 0 chrX 93671157 93671237 -68928693 + AT_rich Low_complexity Low_complexity 1 80 0 317 294 5 65 chrX 93671729 93671818 -68928112 - L1M4 LINE L1 -1096 5050 4976 770 256 67 0 chrX 93671818 93672013 -68927917 - MER63A DNA MER1_type -1 209 2 317 294 5 65 chrX 93672013 93672107 -68927823 - L1M4 LINE L1 -1170 4976 4878 1426 181 127 46 chrX 93672161 93672745 -68927185 - MER76 LTR ERV 0 688 1 822 300 52 32 chrX 93672920 93673267 -68926663 - L1MEd LINE L1 -5491 628 275 621 326 68 29 chrX 93673303 93673681 -68926249 - LTR16A LTR ERVL -51 399 4 1583 75 0 5 chrX 93673781 93673995 -68925935 - L1PA7 LINE L1 -1 6153 5941 710 258 29 42 chrX 93674077 93674531 -68925399 - LTR16A1 LTR ERVL 0 457 44 2273 93 0 10 chrX 93674620 93674931 -68924999 - AluSg SINE Alu -2 308 1 1982 150 3 89 chrX 93675072 93675453 -68924477 + MER7A DNA MER2_type 1 346 0 799 267 9 9 chrX 93675833 93676050 -68923880 - MER20 DNA MER1_type -2 217 1 29 0 0 0 chrX 93676989 93677018 -68922912 + AT_rich Low_complexity Low_complexity 1 29 0 248 0 0 0 chrX 93677137 93677168 -68922762 + HY3 scRNA scRNA 66 96 -5 302 344 15 38 chrX 93677394 93677525 -68922405 + MIR SINE MIR 17 144 -64 310 292 17 101 chrX 93677673 93677851 -68922079 - MER5A DNA MER1_type -6 183 21 475 275 34 24 chrX 93678599 93678806 -68921124 - L1ME3A LINE L1 -2 6160 5963 975 211 19 46 chrX 93678870 93678904 -68921026 - L1ME3A LINE L1 -214 5956 5923 1565 166 0 80 chrX 93678904 93679218 -68920712 + AluJb SINE Alu 1 289 -23 975 211 19 46 chrX 93679218 93679444 -68920486 - L1ME3A LINE L1 -247 5923 5703 303 164 55 0 chrX 93679454 93679509 -68920421 - MADE1 DNA Mariner 0 80 23 249 105 0 0 chrX 93679542 93679580 -68920350 - MADE1 DNA Mariner -42 38 1 920 257 82 14 chrX 93679598 93680199 -68919731 - L1ME3A LINE L1 -525 5637 4999 214 175 16 32 chrX 93683153 93683216 -68916714 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 26 0 0 0 chrX 93683236 93683262 -68916668 + AT_rich Low_complexity Low_complexity 1 26 0 314 202 0 24 chrX 93683336 93683420 -68916510 + (CATA)n Simple_repeat Simple_repeat 3 84 0 5029 177 16 33 chrX 93684691 93685679 -68914251 - L1MB2 LINE L1 0 6171 5220 1527 225 19 0 chrX 93685679 93685990 -68913940 - 7SLRNA srpRNA srpRNA -3 317 1 5029 177 16 33 chrX 93685990 93686357 -68913573 - L1MB2 LINE L1 -951 5220 4848 715 222 0 0 chrX 93686371 93686506 -68913424 + FLAM_A SINE Alu 8 142 0 4895 216 33 21 chrX 93686561 93687833 -68912097 - L1MB2 LINE L1 -1298 4848 3562 5124 25 3 2 chrX 93687840 93688445 -68911485 - L1PA3 LINE L1 -3 6152 5547 3472 27 0 0 chrX 93688445 93688858 -68911072 + L1P LINE L1 1579 1991 -4155 278 232 0 0 chrX 93688857 93688913 -68911017 - L1MB2 LINE L1 -2576 3570 3515 * 396 0 0 0 chrX 93688919 93688963 -68910967 + (TG)n Simple_repeat Simple_repeat 2 45 0 3986 185 67 14 chrX 93688998 93689598 -68910332 - L1MB1 LINE L1 -38 5954 5387 1875 141 43 35 chrX 93689598 93689968 -68909962 - THE1C LTR MaLR -2 373 1 3986 185 67 14 chrX 93689968 93690569 -68909361 - L1MB1 LINE L1 -605 5387 4689 558 227 40 20 chrX 93690573 93690887 -68909043 - L1MB1 LINE L1 -3851 2119 1686 * 1891 235 54 27 chrX 93690886 93691706 -68908224 - L1MB1 LINE L1 -4522 1369 388 608 281 54 72 chrX 93691778 93692169 -68907761 - L1MB1 LINE L1 -5503 388 5 2073 141 26 61 chrX 93692185 93692612 -68907318 - L1MA8 LINE L1 -4 6287 5876 645 110 12 147 chrX 93692652 93692815 -68907115 - L1MA8 LINE L1 -403 5888 5748 597 311 121 17 chrX 93692927 93693400 -68906530 - L1ME3 LINE L1 -287 5875 5354 1514 183 82 92 chrX 93693975 93694316 -68905614 + MSTD LTR MaLR 1 339 -57 206 93 0 23 chrX 93694316 93694359 -68905571 + (TA)n Simple_repeat Simple_repeat 2 43 0 1514 183 82 92 chrX 93694359 93694417 -68905513 + MSTD LTR MaLR 339 396 0 308 280 85 8 chrX 93694688 93694806 -68905124 + L1M4 LINE L1 4117 4243 -1903 365 212 40 32 chrX 93694807 93695002 -68904928 - LTR37B LTR ERV1 -3 464 222 684 180 31 12 chrX 93695002 93695163 -68904767 + L1 LINE L1 2256 2419 -3727 20501 91 8 5 chrX 93695163 93697615 -68902315 - L1PA7 LINE L1 -6 6148 3682 405 0 0 0 chrX 93697615 93697660 -68902270 + (TG)n Simple_repeat Simple_repeat 2 46 0 20501 91 8 5 chrX 93697660 93698950 -68900980 - L1PA7 LINE L1 -2472 3682 2397 13937 171 123 5 chrX 93698950 93699334 -68900596 - L1P LINE L1 -868 5278 4940 2459 128 3 11 chrX 93699334 93699701 -68900229 - THE1B LTR MaLR 0 364 1 13937 171 123 5 chrX 93699701 93702252 -68897678 - L1P LINE L1 -1206 4940 1999 5118 258 34 30 chrX 93702291 93704024 -68895906 - L1PA12 LINE L1 -4782 2802 2 270 246 18 88 chrX 93704028 93704142 -68895788 + L1MC4 LINE L1 7811 7916 -126 232 238 40 0 chrX 93704147 93704248 -68895682 + (TA)n Simple_repeat Simple_repeat 2 106 0 27 29 0 0 chrX 93704325 93704359 -68895571 + AT_rich Low_complexity Low_complexity 1 34 0 1536 273 29 133 chrX 93704709 93705358 -68894572 - MLT1G LTR MaLR -13 577 1 209 254 16 48 chrX 93705564 93705627 -68894303 + MER5A DNA MER1_type 93 153 -36 * 414 268 32 96 chrX 93705625 93705782 -68894148 + MER5A DNA MER1_type 40 186 -3 232 148 37 0 chrX 93705788 93705842 -68894088 + HSMAR1 DNA Mariner 1232 1287 0 191 294 12 82 chrX 93705905 93705990 -68893940 + MER5A DNA MER1_type 110 188 -1 840 201 19 6 chrX 93706039 93706198 -68893732 + MER5A DNA MER1_type 29 189 0 387 228 101 44 chrX 93707242 93707400 -68892530 + L1ME4a LINE L1 5941 6107 -14 360 122 257 0 chrX 93707497 93707571 -68892359 + MER5A DNA MER1_type 14 106 -83 207 152 0 0 chrX 93708434 93708480 -68891450 + (TG)n Simple_repeat Simple_repeat 1 46 0 229 242 65 0 chrX 93708517 93708579 -68891351 - MER5A DNA MER1_type 0 189 124 620 354 16 48 chrX 93710418 93710729 -68889201 - L3 LINE CR1 -112 1465 1165 456 243 50 57 chrX 93711831 93711971 -68887959 - L2 LINE L2 0 3272 3134 388 367 58 0 chrX 93712220 93712359 -68887571 + L2 LINE L2 3126 3272 0 22 35 0 0 chrX 93712594 93712623 -68887307 + AT_rich Low_complexity Low_complexity 1 29 0 279 79 0 0 chrX 93714118 93714156 -68885774 + (TG)n Simple_repeat Simple_repeat 1 38 0 216 374 61 0 chrX 93715504 93715603 -68884327 + L2 LINE L2 2943 3047 -225 222 306 129 0 chrX 93716264 93716349 -68883581 + L2 LINE L2 2927 3022 -250 1389 187 44 54 chrX 93716361 93716676 -68883254 - AluJo SINE Alu 0 312 1 237 377 164 0 chrX 93716957 93717079 -68882851 + L2 LINE L2 3122 3263 -9 215 349 64 46 chrX 93717124 93717233 -68882697 + L2 LINE L2 3182 3292 -21 1898 119 0 11 chrX 93717255 93717548 -68882382 - AluSg SINE Alu 0 306 17 24 77 0 0 chrX 93719189 93719241 -68880689 + AT_rich Low_complexity Low_complexity 1 52 0 187 326 84 21 chrX 93719276 93719371 -68880559 + MIR SINE MIR 39 139 -69 324 0 0 0 chrX 93719828 93719864 -68880066 + (CA)n Simple_repeat Simple_repeat 1 36 0 1692 209 29 54 chrX 93721795 93722273 -68877657 - MLT1C LTR MaLR -1 466 1 1647 198 99 8 chrX 93722562 93722925 -68877005 - MSTD LTR MaLR 0 396 1 47 44 0 0 chrX 93723264 93723332 -68876598 + AT_rich Low_complexity Low_complexity 1 68 0 3735 223 33 9 chrX 93723522 93724369 -68875561 + L1PB1 LINE L1 22 888 -6677 13971 181 24 19 chrX 93724372 93728592 -68871338 + L1PB1 LINE L1 3327 7570 0 21 0 0 0 chrX 93728597 93728618 -68871312 + AT_rich Low_complexity Low_complexity 1 21 0 789 263 0 5 chrX 93728636 93728860 -68871070 + L1 LINE L1 2376 2598 -3548 * 12924 182 49 9 chrX 93728858 93732204 -68867726 - L1 LINE L1 -990 6575 3092 6036 199 19 31 chrX 93732205 93733382 -68866548 - L1 LINE L1 -6295 1270 108 207 0 0 0 chrX 93733382 93733405 -68866525 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6036 199 19 31 chrX 93733405 93733498 -68866432 - L1 LINE L1 -7457 108 15 222 389 87 19 chrX 93733587 93733852 -68866078 - L2 LINE L2 -469 2845 2563 1765 230 108 17 chrX 93734165 93734674 -68865256 - L1PBa LINE L1 -6052 811 231 288 0 0 0 chrX 93734674 93734706 -68865224 + (TG)n Simple_repeat Simple_repeat 2 33 0 1765 230 108 17 chrX 93734706 93734836 -68865094 - L1PBa LINE L1 -6632 231 114 550 208 84 19 chrX 93734843 93734997 -68864933 + L1MA8 LINE L1 4849 5012 -1134 225 0 0 0 chrX 93737609 93737634 -68862296 + (A)n Simple_repeat Simple_repeat 1 25 0 3484 217 54 14 chrX 93737634 93738815 -68861115 + L1MA8 LINE L1 5016 6251 -40 255 209 39 71 chrX 93739248 93739430 -68860500 + (TTAA)n Simple_repeat Simple_repeat 4 179 0 36 53 0 0 chrX 93739572 93739629 -68860301 + AT_rich Low_complexity Low_complexity 1 57 0 228 250 0 0 chrX 93739716 93739776 -68860154 + A-rich Low_complexity Low_complexity 1 60 0 22 35 0 0 chrX 93739920 93739949 -68859981 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chrX 93740771 93740803 -68859127 + AT_rich Low_complexity Low_complexity 1 32 0 5673 290 80 21 chrX 93741040 93741103 -68858827 - L2 LINE L2 -5 3308 3250 285 29 0 0 chrX 93741103 93741137 -68858793 + (TA)n Simple_repeat Simple_repeat 1 34 0 5673 290 80 21 chrX 93741137 93743435 -68856495 - L2 LINE L2 -63 3250 792 3017 96 0 17 chrX 93743435 93743853 -68856077 + MLT2A1 LTR ERVL 1 411 -33 216 148 49 0 chrX 93743870 93743931 -68855999 + (TA)n Simple_repeat Simple_repeat 1 64 0 327 148 0 0 chrX 93743938 93743992 -68855938 + MLT2A1 LTR ERVL 391 444 0 1160 94 0 44 chrX 93743994 93744174 -68855756 + HERVL-A1-A1 LTR ERVL 4 175 -5479 * 25736 78 5 5 chrX 93744170 93747504 -68852426 + HERVL-A1-A1 LTR ERVL 104 3436 -2218 953 73 0 8 chrX 93747511 93747634 -68852296 - HERVL LTR ERVL -1240 4414 4293 * 16907 76 6 19 chrX 93747620 93749866 -68850064 + HERVL-A1-A1 LTR ERVL 3437 5654 0 3238 62 55 0 chrX 93749866 93750250 -68849680 + MLT2A1 LTR ERVL 1 411 -33 255 31 0 0 chrX 93750250 93750282 -68849648 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 3238 62 55 0 chrX 93750282 93750318 -68849612 + MLT2A1 LTR ERVL 411 444 0 699 268 63 29 chrX 93750318 93750626 -68849304 - L2 LINE L2 -2518 796 408 2048 159 122 8 chrX 93750635 93751012 -68848918 - MSTA LTR MaLR -1 427 8 1837 165 49 32 chrX 93751012 93751381 -68848549 + THE1C LTR MaLR 1 375 0 7920 139 21 66 chrX 93751399 93752944 -68846986 - MSTA-int LTR MaLR -6 1574 3 21 0 0 0 chrX 93753594 93753615 -68846315 + AT_rich Low_complexity Low_complexity 1 21 0 675 198 39 11 chrX 93754559 93754741 -68845189 - MER53 DNA DNA -2 187 1 315 378 5 31 chrX 93755124 93755321 -68844609 + MIR SINE MIR 13 201 -61 256 200 17 0 chrX 93756159 93756219 -68843711 + CT-rich Low_complexity Low_complexity 2 62 0 298 298 33 41 chrX 93757222 93757343 -68842587 + L2 LINE L2 3192 3311 -2 279 266 38 0 chrX 93757356 93757435 -68842495 - L1ME4a LINE L1 -80 6041 5960 198 103 0 0 chrX 93757464 93757493 -68842437 + (CA)n Simple_repeat Simple_repeat 2 30 0 183 139 0 0 chrX 93757676 93757712 -68842218 + (TC)n Simple_repeat Simple_repeat 1 36 0 260 269 37 19 chrX 93757866 93757974 -68841956 - L1ME4a LINE L1 -369 5752 5643 383 369 162 18 chrX 93758428 93758865 -68841065 - L2 LINE L2 -9 3263 2765 706 227 91 25 chrX 93758994 93759192 -68840738 - L2 LINE L2 0 3313 3103 861 260 25 0 chrX 93759239 93759435 -68840495 - LTR16A1 LTR ERVL -9 448 248 1725 307 71 44 chrX 93759525 93760430 -68839500 - HERV16 LTR ERVL -3870 1126 198 1380 232 55 44 chrX 93760547 93760982 -68838948 - LTR16A1 LTR ERVL -14 443 4 1569 302 34 16 chrX 93761009 93761520 -68838410 - L2 LINE L2 -411 2903 2378 610 133 0 0 chrX 93761520 93761618 -68838312 + L1MB1 LINE L1 6068 6165 -3 1569 302 34 16 chrX 93761618 93761732 -68838198 - L2 LINE L2 -936 2378 2267 316 281 41 25 chrX 93761732 93761853 -68838077 - L1ME LINE L1 -343 5778 5656 2430 138 18 0 chrX 93761960 93762343 -68837587 - MLT1B LTR MaLR 0 390 1 1488 199 79 19 chrX 93762415 93762782 -68837148 - MLT1B LTR MaLR -1 389 1 317 317 75 55 chrX 93763224 93763517 -68836413 - L1ME LINE L1 -1665 4481 4183 256 285 68 122 chrX 93764013 93764234 -68835696 - L2 LINE L2 -123 3149 2941 23 33 0 0 chrX 93764339 93764369 -68835561 + AT_rich Low_complexity Low_complexity 1 30 0 1049 276 91 57 chrX 93764540 93765015 -68834915 + MLT1J LTR MaLR 4 494 -17 302 269 75 21 chrX 93766142 93766235 -68833695 + MIR SINE MIR 16 113 -95 200 188 0 0 chrX 93766217 93766249 -68833681 + MIR3 SINE MIR 168 199 -9 * 2162 196 26 15 chrX 93767562 93768022 -68831908 + MLT1C LTR MaLR 3 467 0 192 77 0 0 chrX 93768175 93768201 -68831729 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1569 140 9 11 chrX 93768338 93769099 -68830831 - L1PBa LINE L1 -5324 1539 634 1109 156 5 0 chrX 93769101 93769287 -68830643 - L1PBa LINE L1 -6665 198 12 * 14127 184 25 18 chrX 93769280 93773272 -68826658 + L1PB1 LINE L1 2479 6441 -426 197 33 33 0 chrX 93773272 93773302 -68826628 + (TA)n Simple_repeat Simple_repeat 1 31 0 14127 184 25 18 chrX 93773302 93773342 -68826588 + L1PB1 LINE L1 6441 6479 -388 180 0 0 0 chrX 93773342 93773362 -68826568 + (GA)n Simple_repeat Simple_repeat 1 20 0 14127 184 25 18 chrX 93773362 93773684 -68826246 + L1PB1 LINE L1 6479 6867 0 333 47 0 0 chrX 93774994 93775037 -68824893 + (TG)n Simple_repeat Simple_repeat 2 44 0 798 224 55 51 chrX 93775436 93775690 -68824240 + MER112 DNA MER1_type 1 255 -1 232 288 30 0 chrX 93776906 93776972 -68822958 - L2 LINE L2 -5 3308 3241 489 249 75 29 chrX 93777352 93777525 -68822405 + MIR SINE MIR 81 261 -1 227 356 0 30 chrX 93777539 93777650 -68822280 - MIR SINE MIR -55 153 45 1758 268 118 6 chrX 93777680 93778359 -68821571 - L1ME3A LINE L1 -7 6163 5409 2038 115 29 23 chrX 93778542 93778921 -68821009 - Tigger3(Golem) DNA MER2_type 0 3029 1 23 54 0 0 chrX 93779410 93779447 -68820483 + AT_rich Low_complexity Low_complexity 1 37 0 748 292 11 82 chrX 93780175 93780456 -68819474 + MIR SINE MIR 2 262 0 612 161 0 0 chrX 93781205 93781298 -68818632 + FRAM SINE Alu 59 151 -25 185 304 0 0 chrX 93781348 93781394 -68818536 + MIR SINE MIR 33 78 -130 331 338 117 21 chrX 93781441 93781586 -68818344 - MIR3 SINE MIR -28 180 22 2084 179 13 3 chrX 93781718 93782104 -68817826 - MLT1B LTR MaLR 0 390 1 2435 128 15 5 chrX 93782144 93782543 -68817387 - MER57A LTR ERV1 0 403 1 2191 111 3 0 chrX 93782818 93783111 -68816819 + AluSx SINE Alu 1 295 -13 207 0 0 0 chrX 93783111 93783134 -68816796 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 442 300 62 8 chrX 93783138 93783268 -68816662 - MIR SINE MIR -118 144 8 21 0 0 0 chrX 93783553 93783574 -68816356 + AT_rich Low_complexity Low_complexity 1 21 0 664 315 83 48 chrX 93783775 93784150 -68815780 - L2 LINE L2 0 3313 2926 1902 96 0 60 chrX 93784727 93785009 -68814921 - AluSx SINE Alu -9 303 39 397 270 270 0 chrX 93785355 93785507 -68814423 - MIR SINE MIR -9 253 61 487 277 133 21 chrX 93785540 93785728 -68814202 - MIR SINE MIR -6 256 48 5269 129 5 21 chrX 93785908 93786712 -68813218 - MER54B LTR ERVL -2 791 1 275 278 56 0 chrX 93787262 93787352 -68812578 - L2 LINE L2 -18 3254 3160 792 226 110 138 chrX 93787360 93787951 -68811979 + MLT1H1 LTR MaLR 1 555 0 2144 124 3 0 chrX 93788114 93788420 -68811510 - AluSq SINE Alu -6 307 1 323 280 175 6 chrX 93790720 93790883 -68809047 + MIR3 SINE MIR 5 195 -13 200 258 15 136 chrX 93791999 93792108 -68807822 + MIR SINE MIR 91 183 -79 3050 123 10 4 chrX 93792108 93792589 -68807341 + MER31A LTR ERV1 2 485 0 200 258 15 136 chrX 93792589 93792611 -68807319 + MIR SINE MIR 183 206 -56 2106 121 3 3 chrX 93794291 93794589 -68805341 + AluSq SINE Alu 1 298 -15 2177 82 0 21 chrX 93795303 93795594 -68804336 - AluSc SINE Alu -24 285 1 279 198 11 110 chrX 93796151 93796242 -68803688 + MER39 LTR ERV1 1 82 -562 301 78 20 20 chrX 93796264 93796315 -68803615 - MER57A LTR ERV1 -218 185 135 597 84 19 19 chrX 93796571 93796678 -68803252 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 2633 292 130 38 chrX 93796837 93798514 -68801416 - L2 LINE L2 -14 3299 1474 288 0 0 0 chrX 93798554 93798586 -68801344 + (TG)n Simple_repeat Simple_repeat 2 33 0 596 289 0 13 chrX 93798601 93798750 -68801180 + MIR SINE MIR 116 262 0 192 315 158 8 chrX 93798770 93798897 -68801033 - L2 LINE L2 -1828 1486 1341 23 54 0 0 chrX 93799864 93799901 -68800029 + AT_rich Low_complexity Low_complexity 1 37 0 14969 181 57 12 chrX 93801476 93805414 -68794516 - L1PB1 LINE L1 -5 6862 2476 5949 45 5 11 chrX 93805414 93806161 -68793769 - L1PA7 LINE L1 -2 6152 5410 14969 181 57 12 chrX 93806161 93808752 -68791178 - L1PB1 LINE L1 -4391 2476 4 1836 184 25 6 chrX 93808940 93809298 -68790632 + MLT1A1 LTR MaLR 1 365 0 2006 154 30 9 chrX 93809298 93809626 -68790304 + MER1B DNA MER1_type 1 337 0 26 82 0 0 chrX 93809650 93809711 -68790219 + AT_rich Low_complexity Low_complexity 1 61 0 540 308 72 21 chrX 93809951 93810188 -68789742 + MIR SINE MIR 1 249 -13 22 56 0 0 chrX 93810663 93810699 -68789231 + AT_rich Low_complexity Low_complexity 1 36 0 1077 104 6 22 chrX 93811742 93811925 -68788005 + L1MA3 LINE L1 6125 6304 -1 604 290 108 49 chrX 93812261 93812648 -68787282 - LTR33 LTR ERVL 0 521 58 2112 117 3 25 chrX 93812648 93812965 -68786965 + AluSx SINE Alu 1 310 -2 604 290 108 49 chrX 93812965 93813027 -68786903 - LTR33 LTR ERVL -463 58 1 193 361 10 10 chrX 93814178 93814275 -68785655 - L2 LINE L2 -208 3064 2968 31 0 0 0 chrX 93814373 93814404 -68785526 + AT_rich Low_complexity Low_complexity 1 31 0 242 194 14 28 chrX 93814954 93815026 -68784904 - L1PA13 LINE L1 -2 6161 6091 2382 80 0 7 chrX 93816757 93817057 -68782873 + AluSc SINE Alu 1 298 -11 2398 91 3 0 chrX 93818307 93818614 -68781316 - AluSp SINE Alu -5 308 1 430 238 17 52 chrX 93819959 93820131 -68779799 - HAL1b LINE L1 0 1348 1183 249 245 0 0 chrX 93820154 93820203 -68779727 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 233 236 14 0 chrX 93820190 93820262 -68779668 + (TA)n Simple_repeat Simple_repeat 2 74 0 * 370 231 165 46 chrX 93820325 93820488 -68779442 - HAL1b LINE L1 -238 1110 968 2406 197 32 81 chrX 93820488 93821215 -68778715 - LTR8 LTR ERV1 0 691 1 370 231 165 46 chrX 93821215 93821229 -68778701 - HAL1b LINE L1 -380 968 957 3455 154 54 11 chrX 93821229 93821897 -68778033 - LTR34 LTR ERV1 0 699 3 370 231 165 46 chrX 93821897 93822064 -68777866 - HAL1b LINE L1 -391 957 724 * 7014 206 18 11 chrX 93822061 93823657 -68776273 + L1MA1 LINE L1 2328 3934 -2212 25054 27 3 3 chrX 93823657 93827484 -68772446 + L1PA3 LINE L1 2330 6155 0 7537 162 15 7 chrX 93827484 93829266 -68770664 + L1MA1 LINE L1 3912 5700 -602 3417 117 46 8 chrX 93829267 93829787 -68770143 + L1MA1 LINE L1 5763 6302 0 1476 223 67 50 chrX 93830417 93830893 -68769037 - L1MC4 LINE L1 0 8042 7559 771 169 0 27 chrX 93830893 93831041 -68768889 + SVA Other Other 446 589 -797 461 263 83 0 chrX 93831497 93831653 -68768277 + MIR SINE MIR 94 262 0 309 299 88 29 chrX 93831670 93831807 -68768123 + MIR3 SINE MIR 64 208 0 395 204 23 11 chrX 93832236 93832324 -68767606 - MIR SINE MIR -56 206 118 421 299 99 19 chrX 93834695 93834906 -68765024 - MIR SINE MIR -25 237 10 417 39 0 0 chrX 93835473 93835524 -68764406 + (CA)n Simple_repeat Simple_repeat 1 51 0 493 249 122 27 chrX 93837991 93838212 -68761718 - MIR SINE MIR 0 262 21 190 73 49 0 chrX 93838476 93838517 -68761413 + (CAA)n Simple_repeat Simple_repeat 1 43 0 467 313 112 21 chrX 93840227 93840460 -68759470 - MIR SINE MIR -8 254 1 353 235 265 22 chrX 93841584 93841720 -68758210 + MIR SINE MIR 13 181 -81 338 252 152 101 chrX 93842732 93843250 -68756680 - L2 LINE L2 0 3272 2709 229 330 0 40 chrX 93844150 93844250 -68755680 - MER20B DNA MER1_type -604 179 84 522 233 38 38 chrX 93844831 93844990 -68754940 + MIR SINE MIR 34 192 -70 424 202 8 78 chrX 93845319 93845448 -68754482 - MIR SINE MIR -83 179 60 664 235 54 54 chrX 93845485 93845706 -68754224 - L1MC4 LINE L1 -1 8041 7821 3099 220 75 57 chrX 93845716 93846408 -68753522 - L1MC4 LINE L1 -274 7768 7053 642 104 0 0 chrX 93846408 93846504 -68753426 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 3099 220 75 57 chrX 93846504 93846762 -68753168 - L1MC4 LINE L1 -989 7053 6801 257 323 126 24 chrX 93847216 93847343 -68752587 - MIR SINE MIR -74 188 49 676 236 93 0 chrX 93847592 93847753 -68752177 - MER5B DNA MER1_type -2 176 1 1579 188 13 19 chrX 93847928 93848236 -68751694 - AluJb SINE Alu -4 308 3 22 35 0 0 chrX 93848246 93848275 -68751655 + AT_rich Low_complexity Low_complexity 1 29 0 2066 145 36 3 chrX 93848540 93848872 -68751058 + MER2 DNA MER2_type 1 343 -1 267 266 0 0 chrX 93848891 93848955 -68750975 - L2 LINE L2 -259 3054 2991 262 238 50 89 chrX 93849730 93849831 -68750099 - L2 LINE L2 -39 3233 3137 214 307 13 13 chrX 93850032 93850107 -68749823 - L2 LINE L2 -45 3268 3194 672 301 12 24 chrX 93851642 93851888 -68748042 - MIR SINE MIR -1 261 19 338 322 126 17 chrX 93852345 93852519 -68747411 + MIR SINE MIR 22 214 -48 314 163 0 0 chrX 93852630 93852679 -68747251 - L2 LINE L2 -2 3311 3263 227 335 66 28 chrX 93852897 93853079 -68746851 - L2 LINE L2 -193 3079 2891 1256 316 147 22 chrX 93853198 93854087 -68745843 + L3 LINE CR1 576 1575 -2 672 242 28 51 chrX 93855273 93855451 -68744479 - MIR3 SINE MIR -15 193 20 502 195 121 40 chrX 93856510 93856659 -68743271 + MIR SINE MIR 31 191 -71 1911 149 74 31 chrX 93856676 93856999 -68742931 + MER1B DNA MER1_type 1 337 0 1660 191 0 35 chrX 93857343 93857658 -68742272 + AluJo SINE Alu 1 304 -8 323 280 175 6 chrX 93908493 93908656 -68691274 - MIR3 SINE MIR -13 195 5 2144 124 3 0 chrX 93910954 93911260 -68688670 + AluSq SINE Alu 1 307 -6 792 226 110 138 chrX 93911423 93912014 -68687916 - MLT1H1 LTR MaLR 0 555 1 275 278 56 0 chrX 93912022 93912112 -68687818 + L2 LINE L2 3160 3254 -18 5269 129 5 21 chrX 93912662 93913466 -68686464 + MER54B LTR ERVL 1 791 -2 487 277 133 21 chrX 93913646 93913834 -68686096 + MIR SINE MIR 48 256 -6 397 270 270 0 chrX 93913867 93914019 -68685911 + MIR SINE MIR 61 253 -9 1902 96 0 60 chrX 93914365 93914647 -68685283 + AluSx SINE Alu 39 303 -9 664 315 83 48 chrX 93915224 93915599 -68684331 + L2 LINE L2 2926 3313 0 21 0 0 0 chrX 93915800 93915821 -68684109 + AT_rich Low_complexity Low_complexity 1 21 0 442 300 62 8 chrX 93916106 93916236 -68683694 + MIR SINE MIR 8 144 -118 207 0 0 0 chrX 93916240 93916263 -68683667 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2191 111 3 0 chrX 93916263 93916556 -68683374 - AluSx SINE Alu -18 294 1 2435 128 15 5 chrX 93916831 93917230 -68682700 + MER57A LTR ERV1 1 403 0 2084 179 13 3 chrX 93917270 93917656 -68682274 + MLT1B LTR MaLR 1 390 0 331 338 117 21 chrX 93917788 93917933 -68681997 + MIR3 SINE MIR 22 180 -28 185 304 0 0 chrX 93917980 93918026 -68681904 - MIR SINE MIR -130 78 33 612 161 0 0 chrX 93918076 93918169 -68681761 - FRAM SINE Alu -25 151 59 748 292 11 82 chrX 93918918 93919199 -68680731 - MIR SINE MIR 0 262 2 23 54 0 0 chrX 93919927 93919964 -68679966 + AT_rich Low_complexity Low_complexity 1 37 0 2038 115 29 23 chrX 93920453 93920832 -68679098 + Tigger3(Golem) DNA MER2_type 1 3028 -1 1758 268 118 6 chrX 93921015 93921694 -68678236 + L1ME3A LINE L1 5409 6163 -7 1021 149 0 11 chrX 93921846 93922021 -68677909 + MER31A LTR ERV1 309 481 -4 2106 121 3 3 chrX 93923724 93924022 -68675908 + AluSq SINE Alu 1 298 -15 2177 82 0 21 chrX 93924737 93925028 -68674902 - AluSc SINE Alu -24 285 1 279 198 11 110 chrX 93925585 93925676 -68674254 + MER39 LTR ERV1 1 82 -562 213 296 11 23 chrX 93925717 93925805 -68674125 + CT-rich Low_complexity Low_complexity 1 87 0 290 209 75 0 chrX 93926190 93926257 -68673673 + LTR48 LTR ERV1 353 424 -363 523 165 65 51 chrX 93926277 93926501 -68673429 + LTR48 LTR ERV1 566 707 0 833 254 53 20 chrX 93926549 93926852 -68673078 + MER46C DNA MER2_type 1 313 -25 399 21 0 0 chrX 93927729 93927777 -68672153 + (TG)n Simple_repeat Simple_repeat 1 48 0 242 194 14 28 chrX 93929306 93929378 -68670552 + L1PA13 LINE L1 6091 6161 -2 31 0 0 0 chrX 93929928 93929959 -68669971 + AT_rich Low_complexity Low_complexity 1 31 0 604 290 108 49 chrX 93931047 93931109 -68668821 + LTR33 LTR ERVL 1 58 -463 2112 117 3 25 chrX 93931109 93931426 -68668504 - AluSx SINE Alu -2 310 1 604 290 108 49 chrX 93931426 93931813 -68668117 + LTR33 LTR ERVL 58 521 0 1077 104 6 22 chrX 93932149 93932332 -68667598 - L1MA3 LINE L1 -1 6304 6125 22 56 0 0 chrX 93933375 93933411 -68666519 + AT_rich Low_complexity Low_complexity 1 36 0 540 308 72 21 chrX 93933886 93934123 -68665807 - MIR SINE MIR -13 249 1 26 82 0 0 chrX 93934363 93934424 -68665506 + AT_rich Low_complexity Low_complexity 1 61 0 2006 154 30 9 chrX 93934448 93934778 -68665152 - MER1B DNA MER1_type 0 337 1 1836 184 25 6 chrX 93934778 93935134 -68664796 - MLT1A1 LTR MaLR 0 365 1 8185 142 164 10 chrX 93935322 93936869 -68663061 + L1PBa LINE L1 4 1788 -5075 199 358 0 32 chrX 93937058 93937153 -68662777 + MIR SINE MIR 45 136 -126 470 243 69 28 chrX 93937214 93937358 -68662572 - MIR SINE MIR -32 230 81 232 288 30 0 chrX 93937738 93937804 -68662126 + L2 LINE L2 3241 3308 -5 798 224 55 51 chrX 93939020 93939274 -68660656 - MER112 DNA MER1_type -1 255 1 333 47 0 0 chrX 93939674 93939717 -68660213 + (CA)n Simple_repeat Simple_repeat 2 44 0 294 273 0 0 chrX 93940986 93941052 -68658878 + GA-rich Low_complexity Low_complexity 1 66 0 2358 64 0 10 chrX 93943592 93943888 -68656042 + AluY SINE Alu 1 293 -18 759 286 19 23 chrX 93944035 93944297 -68655633 + MIR SINE MIR 2 262 0 371 357 14 7 chrX 93945057 93945200 -68654730 + MIR SINE MIR 52 195 -67 1024 267 129 19 chrX 93945228 93945529 -68654401 - MLT1G1 LTR MaLR 0 595 329 510 61 0 0 chrX 93945529 93945595 -68654335 + (GA)n Simple_repeat Simple_repeat 2 67 0 1024 267 129 19 chrX 93945595 93945745 -68654185 - MLT1G1 LTR MaLR -266 329 1 282 298 78 50 chrX 93946191 93946332 -68653598 - MIR SINE MIR -112 150 6 206 431 52 0 chrX 93948907 93949060 -68650870 + L2 LINE L2 3112 3272 0 214 321 101 9 chrX 93949228 93949337 -68650593 - L2 LINE L2 -1365 1949 1831 451 309 120 5 chrX 93949406 93949597 -68650333 + MIR SINE MIR 32 244 -18 2105 133 3 0 chrX 93950344 93950646 -68649284 + AluSx SINE Alu 1 303 -9 2223 238 52 7 chrX 93950685 93951245 -68648685 - L1ME1 LINE L1 -6 6160 5576 * 4983 156 34 59 chrX 93951243 93952185 -68647745 + L1MA9 LINE L1 5256 6170 -142 207 100 0 0 chrX 93952185 93952215 -68647715 + (CA)n Simple_repeat Simple_repeat 1 30 0 4983 156 34 59 chrX 93952215 93952334 -68647596 + L1MA9 LINE L1 6170 6290 -22 670 286 25 37 chrX 93952375 93952616 -68647314 - L1ME LINE L1 -5589 481 244 1384 231 31 96 chrX 93952870 93953410 -68646520 - MLT1D LTR MaLR 0 505 1 351 307 146 25 chrX 93953632 93953906 -68646024 - L3 LINE CR1 -749 828 522 384 147 0 0 chrX 93953982 93954050 -68645880 - L1PB4 LINE L1 0 6156 6089 482 222 20 0 chrX 93954050 93954149 -68645781 - L1MC2 LINE L1 -38 6306 6206 1453 210 0 0 chrX 93954154 93954425 -68645505 + MLT1B LTR MaLR 1 271 -119 1897 128 54 3 chrX 93954430 93954853 -68645077 + AluSq SINE Alu 1 438 0 1691 210 18 6 chrX 93954895 93955229 -68644701 + MLT1A2 LTR MaLR 26 363 -11 746 142 0 17 chrX 93955228 93955348 -68644582 + MLT1B LTR MaLR 273 390 0 * 4285 188 39 29 chrX 93955379 93956029 -68643901 - L1MC2 LINE L1 -148 6196 5554 2385 140 89 2 chrX 93956029 93956444 -68643486 - LTR47A LTR ERVL -1 451 1 4285 188 39 29 chrX 93956444 93956782 -68643148 - L1MC2 LINE L1 -790 5554 5221 237 33 0 0 chrX 93956782 93956812 -68643118 + (TC)n Simple_repeat Simple_repeat 1 30 0 1733 151 11 7 chrX 93956813 93957097 -68642833 - AluJb SINE Alu -12 300 16 4285 188 39 29 chrX 93957097 93957392 -68642538 - L1MC2 LINE L1 -1122 5222 4906 5196 142 28 8 chrX 93957422 93958513 -68641417 - L1PB3 LINE L1 -8 6146 5031 * 26086 138 13 14 chrX 93958509 93963647 -68636283 - L1PA8A LINE L1 -4 6843 1634 204 111 0 0 chrX 93963647 93963683 -68636247 + (TTG)n Simple_repeat Simple_repeat 1 36 0 26086 138 13 14 chrX 93963683 93964464 -68635466 - L1PA8A LINE L1 -5213 1634 854 1727 135 8 15 chrX 93964508 93964774 -68635156 - L1PA8A LINE L1 -5423 853 590 * 4244 212 35 19 chrX 93964771 93967170 -68632760 - L1PBa LINE L1 -2684 4178 1687 1023 300 42 45 chrX 93967164 93967760 -68632170 - L1PA8A LINE L1 -6267 596 3 * 212 86 29 0 chrX 93967769 93967804 -68632126 + (CAA)n Simple_repeat Simple_repeat 2 37 0 885 142 0 15 chrX 93967840 93967974 -68631956 + FLAM_C SINE Alu 1 132 -1 4868 241 41 11 chrX 93967980 93969382 -68630548 - L1M4 LINE L1 -1241 4905 3463 960 71 0 0 chrX 93969502 93969628 -68630302 - L1MA1 LINE L1 0 6302 6177 348 243 154 36 chrX 93969717 93969880 -68630050 + MLT1H LTR MaLR 415 548 -1 557 352 65 47 chrX 93969904 93970393 -68629537 + L2 LINE L2 317 814 -2500 1620 342 97 18 chrX 93970395 93971541 -68628389 + L2 LINE L2 2073 3312 -1 395 306 141 67 chrX 93972511 93973367 -68626563 + L1ME4a LINE L1 4300 5219 -927 303 293 48 39 chrX 93973391 93973599 -68626331 + L1ME4a LINE L1 5255 5464 -2344 697 270 64 26 chrX 93973660 93973927 -68626003 + L1ME4a LINE L1 5584 5860 -261 262 237 26 13 chrX 93973986 93974062 -68625868 + L1ME4a LINE L1 5963 6039 -82 293 314 16 48 chrX 93974115 93974239 -68625691 - MIR SINE MIR -56 206 87 249 204 0 20 chrX 93974240 93974289 -68625641 + L2 LINE L2 3264 3311 -2 202 167 83 21 chrX 93974773 93974821 -68625109 + MIR SINE MIR 201 251 -11 6690 129 22 7 chrX 93975251 93977101 -68622829 - L1MA1 LINE L1 0 7721 5839 5376 27 3 0 chrX 93977103 93977730 -68622200 - L1PA4 LINE L1 -2 6153 5525 1654 15 0 0 chrX 93977730 93977926 -68622004 + L1PA4 LINE L1 5327 5522 -633 * 19258 182 27 9 chrX 93977924 93979423 -68620507 - L1MA1 LINE L1 -1715 5850 4379 7827 16 0 0 chrX 93979423 93980794 -68619136 - L1PA3 LINE L1 -3 6152 4784 19258 182 27 9 chrX 93980794 93985004 -68614926 - L1MA1 LINE L1 -3186 4379 37 1321 182 71 83 chrX 93985126 93985521 -68614409 + MLT1B LTR MaLR 1 390 0 270 270 153 18 chrX 93986484 93986595 -68613335 - L2 LINE L2 -2 3311 3186 1168 191 28 32 chrX 93986787 93987107 -68612823 - MER33 DNA MER1_type -22 302 1 273 264 217 9 chrX 93987429 93987535 -68612395 + MIR SINE MIR 24 151 -111 1013 140 17 2 chrX 93987535 93987777 -68612153 + AluSx SINE Alu 1 294 -18 238 177 65 0 chrX 93987813 93987875 -68612055 + L1MC4 LINE L1 6638 6703 -1339 34 24 0 0 chrX 93987943 93987984 -68611946 + AT_rich Low_complexity Low_complexity 1 41 0 216 319 11 0 chrX 93988506 93988597 -68611333 + (CA)n Simple_repeat Simple_repeat 2 93 0 253 311 87 29 chrX 93989192 93989295 -68610635 + MIR SINE MIR 2 110 -152 227 222 0 0 chrX 93989346 93989391 -68610539 + (TTA)n Simple_repeat Simple_repeat 2 46 0 432 217 70 0 chrX 93989492 93989607 -68610323 + L1MC4 LINE L1 7920 8042 0 28 29 0 0 chrX 93991995 93992030 -68607900 + AT_rich Low_complexity Low_complexity 1 35 0 239 297 148 8 chrX 93992130 93992258 -68607672 - L2 LINE L2 -534 2780 2635 2039 244 162 11 chrX 93992275 93993110 -68606820 + Zaphod DNA AcHobo 7 967 -3064 4309 119 6 11 chrX 93993149 93993806 -68606124 - L1PA16 LINE L1 -9 6157 5504 423 103 0 0 chrX 93993809 93993877 -68606053 - L1PA16 LINE L1 -740 5426 5359 474 214 0 10 chrX 93993877 93993975 -68605955 + MER4A LTR ERV1 2 98 -566 * 1492 163 8 76 chrX 93993971 93994346 -68605584 + MER4A LTR ERV1 257 664 0 982 181 20 0 chrX 93994346 93994550 -68605380 - L1P LINE L1 -783 5363 5156 16509 178 56 12 chrX 93994553 93997151 -68602779 + L1PA14 LINE L1 3 2485 -5114 2082 117 0 30 chrX 93997151 93997493 -68602437 + AluSx SINE Alu 2 312 0 16509 178 56 12 chrX 93997493 94002379 -68597551 + L1PA14 LINE L1 2485 7590 -9 4053 239 16 2 chrX 94002392 94003419 -68596511 - L1P LINE L1 -981 5165 4125 1741 204 45 9 chrX 94003444 94003866 -68596064 + Zaphod DNA AcHobo 3595 4031 0 3187 207 48 46 chrX 94003948 94005020 -68594910 - L1ME2 LINE L1 -13 6151 5083 2337 93 3 0 chrX 94005020 94005321 -68594609 + AluSp SINE Alu 1 302 -11 3187 207 48 46 chrX 94005321 94005364 -68594566 - L1ME2 LINE L1 -1081 5083 5042 1855 141 9 30 chrX 94005366 94005699 -68594231 - L1MC1 LINE L1 0 6333 6008 231 284 42 32 chrX 94005777 94005872 -68594058 - MIR SINE MIR -123 139 44 234 261 15 0 chrX 94006128 94006193 -68593737 + CT-rich Low_complexity Low_complexity 3 68 0 4146 142 25 3 chrX 94006217 94006912 -68593018 - L1MC1 LINE L1 -304 6029 5320 242 90 15 45 chrX 94006949 94007016 -68592914 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 2962 212 30 57 chrX 94007528 94008727 -68591203 - L1MB4 LINE L1 -27 6153 4992 203 171 66 26 chrX 94008772 94008848 -68591082 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 1279 184 82 121 chrX 94010017 94010057 -68589873 + MSTD LTR MaLR 1 41 -355 2639 151 9 2 chrX 94010057 94010495 -68589435 + L1PA16 LINE L1 5717 6157 -9 1279 184 82 121 chrX 94010495 94010866 -68589064 + MSTD LTR MaLR 41 396 0 339 208 250 0 chrX 94010954 94011074 -68588856 + MER103 DNA DNA 12 161 -5 187 365 29 19 chrX 94011563 94011667 -68588263 + L2 LINE L2 2398 2502 -812 288 0 0 0 chrX 94013006 94013038 -68586892 + (TG)n Simple_repeat Simple_repeat 2 33 0 301 351 45 98 chrX 94014004 94014380 -68585550 - L2 LINE L2 -1 3271 2916 258 298 69 38 chrX 94014450 94014581 -68585349 - MER5B DNA MER1_type -37 141 7 491 267 147 7 chrX 94014594 94014744 -68585186 - MER5A DNA MER1_type -1 188 18 433 327 93 70 chrX 94014782 94014845 -68585085 - L2 LINE L2 -568 2746 2686 2008 125 7 0 chrX 94014845 94015166 -68584764 + AluSx SINE Alu 4 326 0 433 327 93 70 chrX 94015166 94015502 -68584428 - L2 LINE L2 -628 2686 2321 2035 183 24 40 chrX 94015502 94015923 -68584007 - MLT2D LTR ERVL 0 414 1 433 327 93 70 chrX 94015923 94016218 -68583712 - L2 LINE L2 -993 2321 2034 195 270 23 132 chrX 94016216 94016299 -68583631 + L2 LINE L2 2440 2496 -818 * 2115 128 18 15 chrX 94016299 94016635 -68583295 + MER1B DNA MER1_type 1 337 0 195 270 23 132 chrX 94016635 94016725 -68583205 + L2 LINE L2 2496 2594 -720 637 204 23 0 chrX 94016774 94016906 -68583024 + MLT1C-int LTR MaLR 1237 1371 0 1169 229 36 24 chrX 94016912 94017317 -68582613 + MLT1C LTR MaLR 7 390 0 195 382 40 7 chrX 94017323 94017475 -68582455 + L2 LINE L2 2716 2872 -442 547 250 9 66 chrX 94017545 94017757 -68582173 + L2 LINE L2 3114 3313 0 885 118 7 0 chrX 94018449 94018585 -68581345 - L1PB2 LINE L1 -3 6148 6012 2717 261 46 17 chrX 94018585 94019647 -68580283 - L1MEc LINE L1 -4109 2287 1192 10648 19 0 0 chrX 94019656 94020892 -68579038 - L1HS LINE L1 -1481 4665 3430 7902 18 1 0 chrX 94020887 94022399 -68577531 + L1HS LINE L1 4641 6153 -2 * 1256 206 127 16 chrX 94022415 94022857 -68577073 - L1MEc LINE L1 -5222 1174 684 1560 226 45 8 chrX 94022898 94023274 -68576656 + MLT1C LTR MaLR 54 443 -24 2167 165 3 3 chrX 94023462 94023825 -68576105 - Tigger1 DNA MER2_type 0 2418 2056 18016 179 24 14 chrX 94024224 94025296 -68574634 - L1M1 LINE L1 -4200 3365 2306 2066 119 4 0 chrX 94025296 94025573 -68574357 - AluSp SINE Alu -17 296 19 18016 179 24 14 chrX 94025573 94027816 -68572114 - L1M1 LINE L1 -5259 2306 15 10395 145 13 10 chrX 94027819 94028601 -68571329 - Tigger1 DNA MER2_type -329 2089 1311 2454 76 0 10 chrX 94028601 94028915 -68571015 + AluY SINE Alu 1 311 0 10395 145 13 10 chrX 94028915 94030215 -68569715 - Tigger1 DNA MER2_type -1107 1311 2 245 263 0 0 chrX 94030398 94030455 -68569475 + MIR SINE MIR 169 225 -37 1860 297 64 28 chrX 94030611 94031302 -68568628 - L2 LINE L2 -338 2976 2261 542 269 93 19 chrX 94031322 94031538 -68568392 - L2 LINE L2 -1262 2052 1821 2098 192 35 66 chrX 94031554 94032126 -68567804 - MLT2B3 LTR ERVL 0 554 1 263 167 15 45 chrX 94032253 94032319 -68567611 + L1MC4a LINE L1 7223 7286 -522 2054 211 18 56 chrX 94032320 94032930 -68567000 + L1MC4 LINE L1 7456 8042 0 396 257 107 0 chrX 94032930 94033070 -68566860 - L2 LINE L2 -1482 1832 1678 442 266 14 103 chrX 94033096 94033310 -68566620 - MIR SINE MIR -2 260 66 201 241 19 0 chrX 94033307 94033361 -68566569 - L2 LINE L2 -1618 1696 1642 * 2268 140 75 8 chrX 94033363 94033764 -68566166 - MSTA LTR MaLR 0 428 1 8996 170 51 1 chrX 94033768 94035335 -68564595 - MSTA-int LTR MaLR -5 1646 1 2769 120 26 2 chrX 94035335 94035753 -68564177 - MSTA LTR MaLR 0 428 1 2314 278 43 14 chrX 94035755 94036478 -68563452 - L2 LINE L2 -1911 1403 660 625 289 226 44 chrX 94036507 94037125 -68562805 - L2 LINE L2 0 3313 2586 782 216 0 0 chrX 94037455 94037603 -68562327 - FRAM SINE Alu -12 164 17 655 227 0 31 chrX 94037907 94038070 -68561860 + L1PB4 LINE L1 5999 6156 0 335 345 54 7 chrX 94039105 94039253 -68560677 + MIR3 SINE MIR 16 170 -38 1729 130 76 0 chrX 94039631 94039908 -68560022 - AluSx SINE Alu -14 298 1 592 215 12 6 chrX 94040648 94040811 -68559119 + CT-rich Low_complexity Low_complexity 3 166 0 234 111 0 0 chrX 94041254 94041299 -68558631 - LTR66 LTR ERVL -172 438 394 1684 218 22 76 chrX 94041305 94041806 -68558124 - MLT2B1 LTR ERVL -40 480 7 185 294 59 15 chrX 94041832 94041900 -68558030 - MIR SINE MIR -73 189 119 712 291 64 10 chrX 94041905 94042108 -68557822 - MIR SINE MIR -34 228 15 183 74 0 0 chrX 94042322 94042332 -68557598 + (TAAAAA)n Simple_repeat Simple_repeat 2 11 -17 2383 72 0 31 chrX 94042332 94042652 -68557278 + AluY SINE Alu 1 310 -1 183 74 0 0 chrX 94042652 94042668 -68557262 + (TAAAAA)n Simple_repeat Simple_repeat 10 28 0 271 282 73 27 chrX 94043381 94043491 -68556439 + L1M4c LINE L1 550 664 -5720 384 287 26 5 chrX 94043510 94043680 -68556250 + L1M4c LINE L1 777 1280 -5023 623 150 9 0 chrX 94043758 94043871 -68556059 + L1MB3 LINE L1 6062 6175 -8 2145 113 0 0 chrX 94044479 94044794 -68555136 + AluSx SINE Alu 1 315 0 2178 148 37 5 chrX 94045236 94045641 -68554289 + L1MC3 LINE L1 7368 7785 0 1953 136 35 35 chrX 94045740 94046115 -68553815 - THE1C LTR MaLR 0 375 1 22 56 0 0 chrX 94046711 94046747 -68553183 + AT_rich Low_complexity Low_complexity 1 36 0 2758 104 0 5 chrX 94046747 94047151 -68552779 - L1MA3 LINE L1 -1 6304 5903 249 281 34 11 chrX 94047268 94047357 -68552573 + MIR SINE MIR 172 262 0 184 241 37 37 chrX 94047698 94047752 -68552178 - MIR SINE MIR -51 211 158 599 325 68 30 chrX 94048645 94048940 -68550990 + L2 LINE L2 3008 3313 0 23 33 0 0 chrX 94049175 94049205 -68550725 + AT_rich Low_complexity Low_complexity 1 30 0 306 259 70 65 chrX 94049437 94049622 -68550308 + L1M4 LINE L1 4335 4520 -1626 1476 244 67 31 chrX 94049626 94050215 -68549715 - L1MEc LINE L1 -3641 2574 2008 3014 162 24 13 chrX 94050215 94050759 -68549171 - MER44D DNA MER2_type 0 605 1 1476 244 67 31 chrX 94050759 94052145 -68547785 - L1MEc LINE L1 -4207 2008 512 200 33 0 33 chrX 94052749 94052779 -68547151 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 1091 178 42 13 chrX 94053903 94054008 -68545922 - MLT2C1 LTR ERVL 0 464 364 360 0 0 0 chrX 94054008 94054048 -68545882 + (CA)n Simple_repeat Simple_repeat 1 40 0 1091 178 42 13 chrX 94054048 94054226 -68545704 - MLT2C1 LTR ERVL -100 364 161 870 19 0 0 chrX 94055796 94055899 -68544031 + L1PA3 LINE L1 6053 6155 0 1179 111 0 18 chrX 94057067 94057238 -68542692 + AluSg/x SINE Alu 137 304 -8 21 0 0 0 chrX 94058616 94058637 -68541293 + AT_rich Low_complexity Low_complexity 1 21 0 725 153 42 0 chrX 94058708 94058826 -68541104 + FLAM_C SINE Alu 2 124 -9 8565 172 80 89 chrX 94058944 94059283 -68540647 - Tigger1 DNA MER2_type -1 2417 2076 2369 57 0 14 chrX 94059283 94059580 -68540350 - AluY SINE Alu 0 311 19 8565 172 80 89 chrX 94059580 94059704 -68540226 - Tigger1 DNA MER2_type -342 2076 1952 2019 147 0 0 chrX 94059704 94060004 -68539926 + AluSx SINE Alu 1 300 -12 8565 172 80 89 chrX 94060004 94060598 -68539332 - Tigger1 DNA MER2_type -466 1952 1354 7142 49 18 5 chrX 94060598 94061947 -68537983 - L1PA6 LINE L1 -11 6143 4786 8565 172 80 89 chrX 94061947 94062840 -68537090 - Tigger1 DNA MER2_type -1064 1354 490 2349 51 14 0 chrX 94062840 94063135 -68536795 - AluY SINE Alu -12 299 1 8565 172 80 89 chrX 94063135 94063621 -68536309 - Tigger1 DNA MER2_type -1928 490 1 210 37 0 0 chrX 94065473 94065500 -68534430 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chrX 94067700 94067723 -68532207 + AT_rich Low_complexity Low_complexity 1 23 0 1457 172 21 21 chrX 94067840 94068125 -68531805 - L1MC1 LINE L1 0 6333 6049 21 36 0 0 chrX 94068439 94068467 -68531463 + AT_rich Low_complexity Low_complexity 1 28 0 917 154 124 97 chrX 94069137 94069526 -68530404 - MLT1A2 LTR MaLR -1 389 12 6555 143 50 10 chrX 94069704 94069989 -68529941 + Tigger3b DNA MER2_type 1 273 -2755 216 0 0 0 chrX 94069989 94070013 -68529917 + (CTATA)n Simple_repeat Simple_repeat 3 26 0 6555 143 50 10 chrX 94070013 94070911 -68529019 + Tigger3b DNA MER2_type 273 1231 0 24 53 0 0 chrX 94071046 94071084 -68528846 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chrX 94071314 94071338 -68528592 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrX 94072163 94072186 -68527744 + (T)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chrX 94072300 94072322 -68527608 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chrX 94072869 94072892 -68527038 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5555 101 12 5 chrX 94072894 94073718 -68526212 - L1PB1 LINE L1 -7 6144 5315 4611 215 12 3 chrX 94073709 94074768 -68525162 + L1PB1 LINE L1 4260 5328 -818 * 887 284 37 21 chrX 94074937 94075368 -68524562 - L1MC4a LINE L1 -104 6017 5583 6198 105 19 4 chrX 94075477 94076975 -68522955 + L1PA10 LINE L1 4626 6144 -24 272 368 0 0 chrX 94077018 94077094 -68522836 - L2 LINE L2 0 3313 3238 9915 145 80 8 chrX 94078029 94080755 -68519175 + L1PA11 LINE L1 3239 6170 -4 2055 182 18 40 chrX 94080745 94080972 -68518958 + L1MA8 LINE L1 5569 5783 -508 * 321 26 0 0 chrX 94080972 94081010 -68518920 + (CA)n Simple_repeat Simple_repeat 1 38 0 2055 182 18 40 chrX 94081010 94081233 -68518697 + L1MA8 LINE L1 5783 6009 -282 265 98 0 4 chrX 94082287 94082328 -68517602 + MADE1 DNA Mariner 4 37 -43 270 56 0 0 chrX 94082643 94082679 -68517251 + (TG)n Simple_repeat Simple_repeat 1 36 0 1094 111 0 0 chrX 94083301 94083454 -68516476 - AluSg/x SINE Alu -1 311 159 2170 102 27 0 chrX 94083602 94083896 -68516034 + AluSq SINE Alu 1 302 -11 3593 139 98 1 chrX 94084475 94085137 -68514793 - Tigger3b DNA MER2_type -504 727 2 834 192 45 20 chrX 94085194 94085392 -68514538 - MLT1G LTR MaLR 0 590 388 201 121 0 0 chrX 94085406 94085439 -68514491 + (TC)n Simple_repeat Simple_repeat 1 33 0 1579 102 4 4 chrX 94085487 94085722 -68514208 - L1PA11 LINE L1 -2 6172 5938 9897 199 14 7 chrX 94085724 94087862 -68512068 - L1M1 LINE L1 -2139 5426 2865 426 288 83 18 chrX 94088087 94088570 -68511360 - L1MEc LINE L1 -3604 2611 2134 583 275 57 76 chrX 94088794 94088961 -68510969 - L1MEc LINE L1 -4594 1802 1633 1689 157 17 37 chrX 94088961 94089261 -68510669 - AluJb SINE Alu -18 294 1 583 275 57 76 chrX 94089261 94089794 -68510136 - L1MEc LINE L1 -4763 1633 1115 2391 103 0 0 chrX 94090050 94090352 -68509578 + AluSx SINE Alu 1 302 -10 1499 150 0 105 chrX 94091819 94092133 -68507797 + AluJb SINE Alu 1 281 -31 28 0 0 0 chrX 94092641 94092669 -68507261 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 94092783 94092806 -68507124 + AT_rich Low_complexity Low_complexity 1 23 0 3911 92 47 18 chrX 94092806 94093656 -68506274 - L1MA1 LINE L1 -4 6298 5353 * 12678 155 76 6 chrX 94093655 94095969 -68503961 - L1M1 LINE L1 -3986 3579 1103 475 211 30 38 chrX 94095946 94096079 -68503851 - L1M1 LINE L1 -7417 148 17 * 442 381 46 0 chrX 94096401 94096595 -68503335 + L3 LINE CR1 1373 1575 -2 274 264 44 22 chrX 94096953 94097044 -68502886 - MIR3 SINE MIR 0 208 116 6861 21 1 0 chrX 94097052 94097847 -68502083 - L1PA2 LINE L1 0 6155 5360 202 318 32 48 chrX 94097972 94098098 -68501832 - L2 LINE L2 -497 2817 2694 1088 178 14 46 chrX 94099721 94099940 -68499990 + MER20 DNA MER1_type 8 219 0 535 256 158 23 chrX 94100118 94100333 -68499597 - MIR SINE MIR -11 251 8 2050 132 3 3 chrX 94101306 94101601 -68498329 - AluSq SINE Alu -14 299 5 313 310 11 0 chrX 94105008 94105095 -68494835 - L2 LINE L2 -7 3265 3178 605 315 167 21 chrX 94105820 94106347 -68493583 + L2 LINE L2 2715 3313 0 229 302 115 10 chrX 94106697 94106793 -68493137 - L2 LINE L2 -19 3253 3148 885 262 17 21 chrX 94106934 94107167 -68492763 + MIR SINE MIR 31 262 0 532 249 139 0 chrX 94108367 94108540 -68491390 - MIR SINE MIR -57 205 9 1222 209 93 8 chrX 94108847 94109105 -68490825 + AluJo SINE Alu 2 281 -31 441 173 0 12 chrX 94112272 94112353 -68487577 - LTR52-int LTR ERVL -261 3295 3216 1872 203 58 11 chrX 94112377 94112810 -68487120 - MLT1C LTR MaLR -8 459 7 3838 216 88 6 chrX 94112816 94113634 -68486296 - LTR52-int LTR ERVL -2710 2975 2091 1299 175 88 21 chrX 94113729 94114014 -68485916 - LTR52-int LTR ERVL -3875 1810 1507 1017 168 130 112 chrX 94114014 94114584 -68485346 + MER4C LTR ERV1 1 465 0 1563 239 53 28 chrX 94114585 94115015 -68484915 - LTR52-int LTR ERVL -4176 1509 1069 645 128 0 0 chrX 94115049 94115151 -68484779 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 511 254 8 0 chrX 94115252 94115374 -68484556 - LTR52-int LTR ERVL -2641 915 793 280 284 0 14 chrX 94115453 94115527 -68484403 + tRNA-Met-i tRNA tRNA 1 73 -2 2939 81 15 76 chrX 94116375 94116413 -68483517 - MLT2A1 LTR ERVL -2 442 403 487 40 13 13 chrX 94116413 94116488 -68483442 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 2939 81 15 76 chrX 94116488 94116920 -68483010 - MLT2A1 LTR ERVL -41 403 1 11599 69 12 0 chrX 94116920 94118376 -68481554 - HERVL-A1 LTR ERVL 0 5654 4182 2083 71 7 0 chrX 94118369 94118649 -68481281 - HERVL-A1 LTR ERVL -5372 282 1 * 1055 96 17 6 chrX 94118688 94118865 -68481065 + (TA)n Simple_repeat Simple_repeat 2 180 0 2788 74 19 5 chrX 94118869 94119236 -68480694 - MLT2A1 LTR ERVL -72 372 1 950 239 0 0 chrX 94119522 94119706 -68480224 - LTR53 LTR ERVL 0 519 336 4281 227 29 12 chrX 94119718 94120937 -68478993 + L1MB7 LINE L1 3862 5100 -1046 1575 199 56 35 chrX 94120951 94121379 -68478551 + L1MB7 LINE L1 5584 6020 -164 2516 38 6 16 chrX 94121406 94121720 -68478210 - AluY SINE Alu 0 311 1 852 177 20 64 chrX 94121728 94121769 -68478161 - L1MB3 LINE L1 -9 6174 6133 2461 151 18 22 chrX 94121769 94122219 -68477711 - L1PA16 LINE L1 -2 6164 5717 852 177 20 64 chrX 94122219 94122380 -68477550 - L1MB3 LINE L1 -50 6133 5981 525 276 102 9 chrX 94122381 94122606 -68477324 + L1M4 LINE L1 4741 4986 -1160 1620 216 22 11 chrX 94122637 94122998 -68476932 - MLT1A1 LTR MaLR 0 365 1 319 362 92 13 chrX 94123029 94123258 -68476672 - L2 LINE L2 -1216 2098 1852 1805 291 48 24 chrX 94123265 94123850 -68476080 + MLT2F LTR ERVL 17 620 -43 333 118 0 0 chrX 94123850 94123901 -68476029 + (TG)n Simple_repeat Simple_repeat 2 52 0 1805 291 48 24 chrX 94123901 94123947 -68475983 + MLT2F LTR ERVL 620 663 0 192 361 0 0 chrX 94124240 94124312 -68475618 - L2 LINE L2 -15 3257 3186 205 405 0 0 chrX 94124453 94124537 -68475393 - L2 LINE L2 -184 3088 3005 544 294 125 57 chrX 94124706 94125131 -68474799 + HAL1 LINE L1 5 458 -2049 1382 271 45 32 chrX 94125213 94125898 -68474032 + HAL1 LINE L1 769 1462 -1045 2417 195 15 6 chrX 94125901 94126450 -68473480 - L1 LINE L1 -2946 4619 4066 3943 198 72 50 chrX 94126457 94126612 -68473318 - L1 LINE L1 -6528 1037 887 2451 58 0 0 chrX 94126612 94126905 -68473025 - AluY SINE Alu -18 293 1 3943 198 72 50 chrX 94126905 94127749 -68472181 - L1 LINE L1 -6678 887 16 957 225 130 31 chrX 94128232 94128623 -68471307 - MER57B LTR ERV1 -4 430 1 34 65 0 0 chrX 94128704 94128766 -68471164 + AT_rich Low_complexity Low_complexity 1 62 0 287 317 55 6 chrX 94128776 94128959 -68470971 - L1M4 LINE L1 -1908 4238 4047 7012 197 28 27 chrX 94128989 94130500 -68469430 + L1PB1 LINE L1 3047 4561 -1585 2492 72 3 0 chrX 94130500 94130805 -68469125 + AluSp SINE Alu 1 306 -7 7012 197 28 27 chrX 94130805 94131017 -68468913 + L1PB1 LINE L1 4561 4771 -1375 500 172 11 0 chrX 94131025 94131118 -68468812 - L1 LINE L1 -1279 4867 4774 2486 163 8 3 chrX 94131121 94132419 -68467511 + L1PB1 LINE L1 4802 6151 0 24 0 0 0 chrX 94132520 94132544 -68467386 + AT_rich Low_complexity Low_complexity 1 24 0 1708 163 58 25 chrX 94133671 94134034 -68465896 - THE1C LTR MaLR 0 375 1 7813 130 25 15 chrX 94134034 94135548 -68464382 - THE1C-int LTR MaLR 0 1580 5 1679 134 52 68 chrX 94135553 94135934 -68463996 - THE1C LTR MaLR 0 375 1 933 270 15 8 chrX 94136053 94136312 -68463618 - MIR SINE MIR -1 261 1 227 157 0 0 chrX 94136953 94137004 -68462926 - L1MC4 LINE L1 -1378 6664 6614 347 281 83 16 chrX 94137010 94137131 -68462799 - MIR SINE MIR -88 174 46 188 361 37 65 chrX 94137453 94137561 -68462369 + L2 LINE L2 3150 3254 -18 468 292 73 15 chrX 94137825 94137962 -68461968 - L2 LINE L2 -7 3265 3121 329 328 139 8 chrX 94140254 94140376 -68459554 + MER5A DNA MER1_type 4 141 -48 235 190 0 35 chrX 94140397 94140455 -68459475 + L2 LINE L2 3258 3313 0 375 331 144 7 chrX 94141765 94141904 -68458026 - MER5A DNA MER1_type 0 189 32 315 0 0 0 chrX 94143096 94143131 -68456799 + (TG)n Simple_repeat Simple_repeat 1 35 0 231 36 0 0 chrX 94143130 94143158 -68456772 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 21 0 0 0 chrX 94143490 94143511 -68456419 + AT_rich Low_complexity Low_complexity 1 21 0 273 341 102 24 chrX 94145070 94145237 -68454693 + MIR3 SINE MIR 16 195 -13 23 33 0 0 chrX 94147305 94147335 -68452595 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chrX 94147469 94147500 -68452430 + AT_rich Low_complexity Low_complexity 1 31 0 1166 174 99 7 chrX 94147585 94147841 -68452089 - MLT1D LTR MaLR -2 503 240 1574 189 9 0 chrX 94147841 94148159 -68451771 - L1P LINE L1 -851 5295 4975 309 180 0 112 chrX 94148161 94148250 -68451680 - MLT1D LTR MaLR -25 480 402 818 218 63 62 chrX 94148255 94148551 -68451379 - MLT1D LTR MaLR -170 297 1 21 36 0 0 chrX 94148699 94148727 -68451203 + AT_rich Low_complexity Low_complexity 1 28 0 1142 6 49 0 chrX 94148969 94149131 -68450799 + (TCTA)n Simple_repeat Simple_repeat 2 171 0 22 0 0 0 chrX 94150064 94150086 -68449844 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 94151097 94151118 -68448812 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 94151152 94151181 -68448749 + AT_rich Low_complexity Low_complexity 1 29 0 1292 222 10 36 chrX 94151239 94151545 -68448385 + AluJo SINE Alu 1 298 -14 225 0 0 0 chrX 94152536 94152561 -68447369 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chrX 94152928 94152949 -68446981 + AT_rich Low_complexity Low_complexity 1 21 0 836 100 0 0 chrX 94153917 94154027 -68445903 - MSTA LTR MaLR 0 428 319 590 117 0 11 chrX 94154110 94154204 -68445726 - MSTA LTR MaLR -335 93 1 396 355 7 67 chrX 94154376 94154675 -68445255 - L2 LINE L2 -243 3070 2791 182 300 0 50 chrX 94155307 94155387 -68444543 + L2 LINE L2 3176 3251 -62 364 329 158 29 chrX 94156192 94156539 -68443391 + MLT1H LTR MaLR 107 498 -51 509 114 0 57 chrX 94156862 94156950 -68442980 + LTR23 LTR ERV1 320 402 -35 23 0 0 0 chrX 94158518 94158541 -68441389 + AT_rich Low_complexity Low_complexity 1 23 0 39 22 0 0 chrX 94158937 94158983 -68440947 + AT_rich Low_complexity Low_complexity 1 46 0 234 305 63 0 chrX 94159086 94159181 -68440749 - L2 LINE L2 -51 3221 3121 6252 127 10 1 chrX 94160566 94161501 -68438429 + Tigger1 DNA MER2_type 1476 2418 0 19024 203 23 26 chrX 94161818 94166447 -68433483 - L1P3 LINE L1 -1444 5017 404 2378 63 7 0 chrX 94166447 94166747 -68433183 - AluY SINE Alu -9 302 1 19024 203 23 26 chrX 94166747 94167141 -68432789 - L1P3 LINE L1 -6057 404 10 4375 160 24 13 chrX 94167164 94167946 -68431984 - Tigger1 DNA MER2_type -1627 791 1 1775 53 0 0 chrX 94168593 94168820 -68431110 - L1PA7 LINE L1 0 6154 5928 225 65 0 0 chrX 94170716 94170747 -68429183 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 300 342 158 0 chrX 94170835 94170987 -68428943 - L2 LINE L2 -218 3054 2879 262 302 156 10 chrX 94171225 94171321 -68428609 - MIR3 SINE MIR -17 191 82 1874 188 103 33 chrX 94171350 94171808 -68428122 - LTR2B LTR ERV1 0 490 1 312 283 42 63 chrX 94172294 94172485 -68427445 - L1M4 LINE L1 -3669 2477 2291 2137 241 23 6 chrX 94172588 94173070 -68426860 - MLT1E2 LTR MaLR 0 626 137 21 0 0 0 chrX 94173301 94173322 -68426608 + AT_rich Low_complexity Low_complexity 1 21 0 2189 110 0 13 chrX 94173808 94174109 -68425821 - AluSc SINE Alu -12 297 1 1836 203 25 3 chrX 94175922 94176277 -68423653 - MLT1A1 LTR MaLR -2 363 1 712 148 52 30 chrX 94176745 94176880 -68423050 + THE1C LTR MaLR 1 138 -237 646 122 73 8 chrX 94176881 94177004 -68422926 + THE1C-int LTR MaLR 1446 1576 -4 1898 157 47 14 chrX 94177008 94177371 -68422559 + THE1C LTR MaLR 1 375 0 407 241 96 24 chrX 94178793 94178959 -68420971 - MER5B DNA MER1_type 0 178 1 469 313 55 16 chrX 94178965 94179147 -68420783 - MER5A DNA MER1_type 0 189 1 1372 254 73 65 chrX 94179431 94180017 -68419913 - MLT1E LTR MaLR -2 591 1 924 113 0 0 chrX 94181108 94181232 -68418698 - FLAM_C SINE Alu -19 124 1 1038 181 30 20 chrX 94181252 94181451 -68418479 + MER1B DNA MER1_type 1 201 -96 54 40 0 0 chrX 94181460 94181535 -68418395 + AT_rich Low_complexity Low_complexity 1 75 0 411 349 42 5 chrX 94181696 94181911 -68418019 - L1M4 LINE L1 -1310 4836 4614 360 0 0 0 chrX 94182167 94182207 -68417723 + (TG)n Simple_repeat Simple_repeat 2 41 0 507 257 99 31 chrX 94182253 94182475 -68417455 - L1MC4 LINE L1 -2 8040 7804 1107 263 75 28 chrX 94182526 94182822 -68417108 - L1MC4 LINE L1 -427 7615 7282 762 257 44 68 chrX 94182822 94183234 -68416696 - MER93a LTR ERV1 0 402 1 1107 263 75 28 chrX 94183234 94183469 -68416461 - L1MC4 LINE L1 -760 7282 7059 201 171 24 0 chrX 94185083 94185124 -68414806 + CT-rich Low_complexity Low_complexity 1 42 0 2231 94 11 0 chrX 94185438 94185724 -68414206 - AluSx SINE Alu -21 291 3 331 336 62 34 chrX 94185955 94186148 -68413782 + MIR SINE MIR 16 210 -52 24 67 0 0 chrX 94186177 94186222 -68413708 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 94187331 94187352 -68412578 + AT_rich Low_complexity Low_complexity 1 21 0 343 264 75 63 chrX 94187961 94188135 -68411795 + MER5B DNA MER1_type 3 178 0 198 103 0 0 chrX 94188695 94188724 -68411206 + (CATATA)n Simple_repeat Simple_repeat 6 34 0 4592 32 0 5 chrX 94188954 94189512 -68410418 - L1P LINE L1 -1366 4780 4226 11260 102 8 1 chrX 94189521 94191075 -68408855 + THE1B-int LTR MaLR 17 1580 0 2185 131 33 19 chrX 94191075 94191434 -68408496 + THE1B LTR MaLR 1 364 0 681 223 31 13 chrX 94191434 94191658 -68408272 + Charlie5 DNA MER1_type 2336 2563 -49 186 43 0 0 chrX 94192233 94192256 -68407674 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 493 111 0 0 chrX 94192568 94192649 -68407281 + AluS SINE Alu 224 304 -8 1907 94 4 22 chrX 94192760 94193035 -68406895 + AluSq SINE Alu 3 272 -41 441 0 0 0 chrX 94193047 94193096 -68406834 + (TAA)n Simple_repeat Simple_repeat 2 50 0 309 298 24 0 chrX 94199290 94199374 -68400556 - L2 LINE L2 -1 3271 3186 3785 228 65 74 chrX 94199823 94201395 -68398535 - LTR8-int LTR ERV1 -2476 5644 4087 276 30 0 0 chrX 94201400 94201433 -68398497 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1415 140 0 14 chrX 94201433 94201641 -68398289 - AluJb SINE Alu -32 280 76 2624 132 50 11 chrX 94201642 94202369 -68397561 - LTR8-int LTR ERV1 -1798 3565 2705 899 181 69 0 chrX 94202379 94202567 -68397363 - LTR8-int LTR ERV1 -569 4311 4111 8584 171 44 79 chrX 94202575 94203883 -68396047 - LTR8-int LTR ERV1 -3813 2450 1240 348 43 0 0 chrX 94203883 94203929 -68396001 + (CA)n Simple_repeat Simple_repeat 1 46 0 8584 171 44 79 chrX 94203929 94204719 -68395211 - LTR8-int LTR ERV1 -5023 1240 424 1257 209 0 5 chrX 94204767 94204987 -68394943 - LTR8-int LTR ERV1 -6044 219 1 3490 146 47 65 chrX 94204987 94205691 -68394239 - LTR8 LTR ERV1 0 691 1 1776 192 86 22 chrX 94205695 94206158 -68393772 - L1MC3 LINE L1 -120 7665 7173 3626 142 53 3 chrX 94206748 94207370 -68392560 - MER39B LTR ERV1 0 653 1 1966 143 3 29 chrX 94209216 94209530 -68390400 - AluJb SINE Alu -4 308 3 2662 114 37 2 chrX 94210442 94210872 -68389058 + LTR56 LTR ERV1 1 445 0 370 238 0 0 chrX 94211712 94211792 -68388138 + MER57A LTR ERV1 284 363 -40 1426 133 22 13 chrX 94211816 94212041 -68387889 + AluJb SINE Alu 3 229 -83 268 253 13 13 chrX 94212257 94212332 -68387598 + LTR49-int LTR ERV1 1116 1190 -5141 353 282 0 0 chrX 94212364 94212435 -68387495 + tRNA-Glu-GAG tRNA tRNA 3 73 -2 791 172 37 12 chrX 94212488 94212651 -68387279 + LTR49-int LTR ERV1 1501 1667 -4664 30768 115 15 58 chrX 94212922 94219354 -68380576 + L1PA7 LINE L1 14 6154 0 485 116 0 0 chrX 94219442 94219511 -68380419 + L1P LINE L1 4948 5016 -1130 * 1153 107 0 0 chrX 94219507 94219684 -68380246 - L1P LINE L1 -805 5341 5165 6659 180 80 68 chrX 94219698 94221359 -68378571 + LTR49-int LTR ERV1 1943 3622 -2709 231 361 28 56 chrX 94223426 94223503 -68376427 + MER91C DNA MER1_type 1 76 -64 1511 212 51 29 chrX 94223503 94223589 -68376341 - LTR52 LTR ERVL -2 419 336 243 61 0 0 chrX 94223589 94223622 -68376308 + (CA)n Simple_repeat Simple_repeat 1 33 0 1511 212 51 29 chrX 94223622 94223945 -68375985 - LTR52 LTR ERVL -85 336 1 231 361 28 56 chrX 94223945 94223975 -68375955 + MER91C DNA MER1_type 76 105 -35 22 35 0 0 chrX 94223989 94224018 -68375912 + AT_rich Low_complexity Low_complexity 1 29 0 815 144 43 21 chrX 94224022 94224210 -68375720 - L1MA4 LINE L1 -6 6294 6103 214 364 45 9 chrX 94224486 94224596 -68375334 - L2 LINE L2 -5 3267 3154 609 170 126 13 chrX 94225519 94225678 -68374252 - MER104 DNA MER2_type -3 177 1 180 97 0 0 chrX 94227487 94227518 -68372412 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 348 64 0 0 chrX 94227580 94227627 -68372303 + (TG)n Simple_repeat Simple_repeat 2 48 0 7323 156 18 8 chrX 94227769 94230077 -68369853 - L1MA1 LINE L1 -105 7616 5287 207 0 0 0 chrX 94230077 94230100 -68369830 + (T)n Simple_repeat Simple_repeat 1 23 0 32 26 0 0 chrX 94230152 94230191 -68369739 + AT_rich Low_complexity Low_complexity 1 39 0 5901 6 0 0 chrX 94230191 94230847 -68369083 - L1HS LINE L1 0 6155 5500 * 7007 22 0 0 chrX 94230836 94231755 -68368175 + L1P1 LINE L1 4557 5475 -680 * 14057 171 22 13 chrX 94231753 94235910 -68364020 - L1MA1 LINE L1 -2260 5305 1109 439 192 58 19 chrX 94235956 94236060 -68363870 - L1MA1 LINE L1 -7442 123 16 4624 202 10 11 chrX 94236887 94237930 -68362000 - L1MB3 LINE L1 0 6183 5142 1686 174 10 20 chrX 94237930 94238092 -68361838 - AluJb SINE Alu -17 295 136 2375 58 0 32 chrX 94238092 94238400 -68361530 - AluY SINE Alu -13 298 1 1686 174 10 20 chrX 94238400 94238535 -68361395 - AluJb SINE Alu -176 136 1 4624 202 10 11 chrX 94238535 94238707 -68361223 - L1MB3 LINE L1 -1041 5142 4971 512 335 39 26 chrX 94238764 94238994 -68360936 - MIR SINE MIR -28 234 2 2035 221 92 13 chrX 94239377 94239974 -68359956 + LTR48B LTR ERV1 1 644 0 315 281 111 30 chrX 94240208 94240343 -68359587 + MIR SINE MIR 102 247 -15 638 147 39 23 chrX 94240586 94240715 -68359215 + MER46C DNA MER2_type 207 337 -1 21 0 0 0 chrX 94241180 94241201 -68358729 + AT_rich Low_complexity Low_complexity 1 21 0 331 328 26 9 chrX 94241479 94241595 -68358335 - MIR3 SINE MIR -43 165 48 601 321 170 0 chrX 94242010 94242234 -68357696 - MIR SINE MIR 0 262 1 788 336 38 50 chrX 94242489 94242965 -68356965 - LTR33 LTR ERVL -8 513 44 1336 97 5 48 chrX 94244223 94244430 -68355500 + Tigger2a DNA MER2_type 11 208 -226 349 141 0 47 chrX 94244618 94244682 -68355248 - MLT1J LTR MaLR -52 459 399 308 226 12 24 chrX 94245281 94245365 -68354565 - L1MB1 LINE L1 -55 6134 6052 * 820 122 26 131 chrX 94245360 94245589 -68354341 + L1MA10 LINE L1 6111 6315 -19 699 269 185 23 chrX 94245609 94245955 -68353975 - MLT1J LTR MaLR -108 403 2 277 247 82 0 chrX 94246211 94246284 -68353646 - MER116 DNA Mariner -1 79 1 1858 215 85 58 chrX 94246499 94247108 -68352822 + MLT1E2 LTR MaLR 1 626 0 1137 148 25 5 chrX 94248089 94248285 -68351645 + Tigger2a DNA MER2_type 205 404 -40 25 51 0 0 chrX 94248773 94248812 -68351118 + AT_rich Low_complexity Low_complexity 1 39 0 1106 243 37 52 chrX 94249108 94249590 -68350340 + L1M4 LINE L1 4074 4548 -1598 319 329 68 84 chrX 94249601 94250027 -68349903 - L2 LINE L2 -42 3230 2812 2815 38 9 0 chrX 94250219 94250566 -68349364 - L1P LINE L1 -1156 4990 4641 * 12159 92 1 1 chrX 94250561 94252266 -68347664 + L1P LINE L1 3430 5135 -1011 5464 42 7 3 chrX 94252366 94253054 -68346876 - L1P LINE L1 -2184 3962 3272 7880 15 0 0 chrX 94253055 94254102 -68345828 + L1HS LINE L1 5107 6153 -2 1290 206 127 16 chrX 94254118 94254560 -68345370 - L1MEc LINE L1 -5222 1174 684 844 208 63 10 chrX 94254601 94254808 -68345122 + MLT1C LTR MaLR 54 271 -196 1568 154 53 113 chrX 94304809 94305224 -68294706 + L1MC1 LINE L1 339 728 -5698 2119 200 65 0 chrX 94305224 94305624 -68294306 - MSTB LTR MaLR 0 426 1 8202 191 7 16 chrX 94305629 94306362 -68293568 - MSTB-int LTR MaLR -5 1646 908 2707 27 0 0 chrX 94306362 94306661 -68293269 - AluYa5 SINE Alu -12 299 1 8202 191 7 16 chrX 94306661 94307588 -68292342 - MSTB-int LTR MaLR -743 908 1 2150 196 44 2 chrX 94307588 94307997 -68291933 - MSTB LTR MaLR 0 426 1 524 200 8 8 chrX 94308004 94308124 -68291806 + L1MC1 LINE L1 732 851 -5575 562 194 83 0 chrX 94308127 94308307 -68291623 + L1MC1 LINE L1 1988 2182 -4244 817 154 8 0 chrX 94308307 94308430 -68291500 + FLAM_C SINE Alu 1 124 -19 348 24 0 0 chrX 94308431 94308472 -68291458 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4797 252 46 13 chrX 94308472 94310612 -68289318 + L1MC1 LINE L1 2175 4385 -2041 319 154 0 0 chrX 94310622 94310687 -68289243 - L1MA3 LINE L1 0 6305 6241 282 193 0 0 chrX 94310692 94310749 -68289181 - L1 LINE L1 -988 5158 5102 11818 176 25 33 chrX 94310752 94310815 -68289115 - L1MA2 LINE L1 -48 6256 6194 1215 147 89 0 chrX 94310815 94311040 -68288890 + L1PA11 LINE L1 5930 6174 0 11818 176 25 33 chrX 94311040 94313060 -68286870 - L1MA2 LINE L1 -110 6194 4160 2011 114 13 57 chrX 94313060 94313376 -68286554 - AluSx SINE Alu -10 302 1 11818 176 25 33 chrX 94313376 94313594 -68286336 - L1MA2 LINE L1 -2144 4160 3942 2145 114 10 3 chrX 94313594 94313900 -68286030 - AluSc SINE Alu -1 308 1 11818 176 25 33 chrX 94313900 94315409 -68284521 - L1MA2 LINE L1 -2362 3942 2423 324 0 0 0 chrX 94315409 94315445 -68284485 + (TG)n Simple_repeat Simple_repeat 2 37 0 11818 176 25 33 chrX 94315445 94315503 -68284427 - L1MA2 LINE L1 -3881 2423 2414 2100 113 0 3 chrX 94315503 94315822 -68284108 - AluY SINE Alu 0 318 1 11818 176 25 33 chrX 94315822 94315873 -68284057 - L1MA2 LINE L1 -3890 2414 2364 3522 229 32 9 chrX 94315879 94317586 -68282344 + L1MC1 LINE L1 4391 6141 -472 3001 171 19 19 chrX 94317596 94317646 -68282284 - MER1A DNA MER1_type -2173 527 478 2198 139 0 0 chrX 94317646 94317949 -68281981 - AluSx SINE Alu -9 303 1 3001 171 19 19 chrX 94317949 94318425 -68281505 - MER1A DNA MER1_type -2221 479 1 2772 174 10 4 chrX 94318638 94319121 -68280809 + MER66B LTR ERV1 1 486 0 10484 221 75 88 chrX 94319121 94321739 -68278191 + MER66B-int LTR ERV1 1 2536 -4140 6266 58 5 0 chrX 94321739 94322530 -68277400 + L1PA7 LINE L1 5360 6154 0 10484 221 75 88 chrX 94322530 94324372 -68275558 + MER66B-int LTR ERV1 2536 4401 -2275 229 147 0 73 chrX 94324372 94324440 -68275490 - MER4D LTR ERV1 -805 67 5 353 327 7 7 chrX 94324543 94324693 -68275237 - LOR1-int LTR ERV1 -1142 6978 6829 6800 134 11 34 chrX 94324773 94325931 -68273999 + MER66B-int LTR ERV1 4539 5670 -1006 1129 82 48 0 chrX 94325932 94326103 -68273827 + AluSq SINE Alu 131 308 0 5746 143 31 7 chrX 94326103 94327066 -68272864 + MER66B-int LTR ERV1 5684 6669 -7 2686 161 38 19 chrX 94327073 94327550 -68272380 + MER66B LTR ERV1 1 486 0 948 278 94 0 chrX 94327550 94327838 -68272092 + MER45B DNA AcHobo 9 323 -717 1517 148 74 89 chrX 94327853 94328164 -68271766 + MLT2C1 LTR ERVL 12 317 -80 213 65 0 0 chrX 94328164 94328195 -68271735 + (TG)n Simple_repeat Simple_repeat 2 32 0 1517 148 74 89 chrX 94328195 94328275 -68271655 + MLT2C1 LTR ERVL 317 397 0 3102 302 61 41 chrX 94328276 94329040 -68270890 + ERVL-C1 LTR ERVL 2 749 -5015 2504 84 0 0 chrX 94329040 94329349 -68270581 - AluSc SINE Alu 0 309 1 3102 302 61 41 chrX 94329349 94330384 -68269546 + ERVL-C1 LTR ERVL 749 1837 -3927 974 214 0 12 chrX 94330399 94330642 -68269288 + ERVL-C1 LTR ERVL 5518 5757 -7 1310 171 0 0 chrX 94330642 94330876 -68269054 + MLT2C1 LTR ERVL 3 236 -161 25288 32 19 2 chrX 94330876 94336889 -68263041 + L1PA3 LINE L1 5 6155 0 26 30 0 0 chrX 94336891 94336924 -68263006 + AT_rich Low_complexity Low_complexity 1 33 0 262 141 0 10 chrX 94336924 94337017 -68262913 + MLT2C1 LTR ERVL 216 393 -4 263 296 0 14 chrX 94337024 94337095 -68262835 + MER45B DNA AcHobo 313 382 -658 661 217 0 0 chrX 94337126 94337246 -68262684 - FLAM_C SINE Alu -23 120 1 2081 209 18 5 chrX 94337246 94337691 -68262239 + MER45B DNA AcHobo 390 840 -200 3804 200 35 23 chrX 94337698 94338432 -68261498 - L1MB7 LINE L1 -129 6055 5297 1893 128 54 8 chrX 94338432 94338784 -68261146 - L1MA1 LINE L1 0 6302 5935 3804 200 35 23 chrX 94338784 94339370 -68260560 - L1MB7 LINE L1 -887 5297 4719 1576 235 50 31 chrX 94339379 94339962 -68259968 - L1MB7 LINE L1 -2347 3799 3206 1359 208 80 10 chrX 94339951 94340264 -68259666 - L1MB5 LINE L1 0 6174 5840 * 2962 221 114 21 chrX 94340261 94341238 -68258692 - L1MB7 LINE L1 -2906 3240 2174 1797 194 24 64 chrX 94341247 94341700 -68258230 + LTR55 LTR ERV 1 435 -113 343 235 97 51 chrX 94341798 94342015 -68257915 - L1MDa LINE L1 -4295 2426 2200 24 32 0 0 chrX 94342066 94342097 -68257833 + AT_rich Low_complexity Low_complexity 1 31 0 582 265 71 27 chrX 94342258 94342594 -68257336 - L1MDa LINE L1 -4459 2132 1792 2297 169 5 5 chrX 94342614 94343017 -68256913 + MER57A LTR ERV1 1 403 0 4068 206 11 30 chrX 94343017 94343875 -68256055 + MER57A-int LTR ERV1 1 841 -6696 291 233 0 41 chrX 94343982 94344055 -68255875 + MER57-int LTR ERV1 2836 2905 -3358 375 127 0 0 chrX 94344118 94344173 -68255757 + MER34C LTR ERV1 156 210 -375 245 88 0 0 chrX 94344176 94344210 -68255720 - MER34C LTR ERV1 -383 202 169 290 302 6 63 chrX 94344285 94344444 -68255486 + MER34C LTR ERV1 278 427 -158 404 212 9 0 chrX 94344445 94344555 -68255375 + MER57-int LTR ERV1 1096 1172 -3699 425 230 60 0 chrX 94344736 94344836 -68255094 + MER57-int LTR ERV1 3236 3341 -2990 375 261 0 0 chrX 94344892 94344984 -68254946 + MER57-int LTR ERV1 3354 3445 -2886 3781 157 108 126 chrX 94345111 94346216 -68253714 + MER57-int LTR ERV1 1721 2844 -4205 230 203 130 0 chrX 94346216 94346285 -68253645 - MER109 Unknown Unknown -1845 587 510 3781 157 108 126 chrX 94346285 94346828 -68253102 + MER57-int LTR ERV1 2844 5437 -1612 306 114 0 0 chrX 94346821 94346865 -68253065 - MER57-int LTR ERV1 -222 7315 7272 * 719 136 24 8 chrX 94346865 94346990 -68252940 - LTR54B LTR ERV1 -371 127 1 2512 148 36 7 chrX 94346990 94347428 -68252502 - MER57-int LTR ERV1 -393 7144 6694 2221 182 10 0 chrX 94347436 94347832 -68252098 - MER57A LTR ERV1 0 403 4 1196 174 40 43 chrX 94347840 94348093 -68251837 - MER57A-int LTR ERV1 -5 7532 7281 724 135 23 30 chrX 94348094 94348227 -68251703 - LTR54B LTR ERV1 -366 132 1 1171 156 13 22 chrX 94348333 94348557 -68251373 - AluJb SINE Alu -5 307 86 1340 215 98 29 chrX 94348585 94349073 -68250857 - L1M4 LINE L1 -5131 1724 1203 2431 294 63 23 chrX 94349604 94350477 -68249453 - L1M4 LINE L1 -5923 936 29 1569 230 36 48 chrX 94350519 94351040 -68248890 - L1M4 LINE L1 -1850 4296 3782 490 206 7 14 chrX 94351093 94351239 -68248691 - L1M4 LINE L1 -2974 3172 3028 13484 185 17 9 chrX 94351260 94355237 -68244693 - L1MA1 LINE L1 0 7721 3712 19597 175 30 7 chrX 94355344 94356570 -68243360 - L1MA1 LINE L1 -3853 3712 2516 1993 112 0 7 chrX 94356570 94356886 -68243044 - AluSg SINE Alu 0 322 9 19597 175 30 7 chrX 94356886 94359270 -68240660 - L1MA1 LINE L1 -5049 2516 18 23 33 0 0 chrX 94359529 94359559 -68240371 + AT_rich Low_complexity Low_complexity 1 30 0 1790 159 55 25 chrX 94359695 94360059 -68239871 + THE1C LTR MaLR 1 375 0 1865 98 0 0 chrX 94360232 94360477 -68239453 + AluSg SINE Alu 40 284 -26 189 0 0 0 chrX 94360480 94360501 -68239429 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 219 303 152 38 chrX 94360754 94360886 -68239044 - MIR SINE MIR -6 256 110 235 95 119 0 chrX 94360952 94360994 -68238936 - L1PA15 LINE L1 -7 6158 6112 * 655 47 0 12 chrX 94360990 94361075 -68238855 - L1PA3 LINE L1 -205 5949 5866 1847 40 0 0 chrX 94361075 94361296 -68238634 + L1PA3 LINE L1 5933 6155 0 4212 105 16 0 chrX 94361303 94361921 -68238009 - L1PA13 LINE L1 -43 6120 5493 24 0 0 0 chrX 94362059 94362083 -68237847 + AT_rich Low_complexity Low_complexity 1 24 0 327 293 101 30 chrX 94362242 94362440 -68237490 - MIR SINE MIR -49 213 2 25 0 0 0 chrX 94364553 94364578 -68235352 + AT_rich Low_complexity Low_complexity 1 25 0 1276 237 25 0 chrX 94364578 94364857 -68235073 - AluJo SINE Alu -22 290 5 24 53 0 0 chrX 94365837 94365875 -68234055 + AT_rich Low_complexity Low_complexity 1 38 0 654 279 5 11 chrX 94365991 94366181 -68233749 - MER5A DNA MER1_type 0 189 1 186 374 55 0 chrX 94366185 94366276 -68233654 + MIR SINE MIR 16 111 -97 523 284 84 38 chrX 94366347 94366586 -68233344 - L2 LINE L2 0 3313 3064 539 321 32 21 chrX 94366587 94366774 -68233156 - MIR SINE MIR -69 193 5 249 325 35 11 chrX 94366875 94367009 -68232921 - MIR SINE MIR -67 141 3 263 296 0 28 chrX 94370004 94370075 -68229855 + L2 LINE L2 3244 3312 -1 2350 74 3 3 chrX 94371527 94371825 -68228105 - AluY SINE Alu -10 301 4 496 329 154 37 chrX 94371838 94372198 -68227732 - L1MC/D LINE L1 -2011 5797 5364 240 35 0 0 chrX 94372198 94372227 -68227703 + (CA)n Simple_repeat Simple_repeat 1 29 0 496 329 154 37 chrX 94372227 94372352 -68227578 - L1MC/D LINE L1 -2444 5364 5255 22 0 0 0 chrX 94372528 94372550 -68227380 + AT_rich Low_complexity Low_complexity 1 22 0 1189 121 16 0 chrX 94372598 94372788 -68227142 + L1MA4 LINE L1 5736 5928 -372 346 240 16 23 chrX 94372821 94372950 -68226980 + (TA)n Simple_repeat Simple_repeat 1 128 0 272 180 108 58 chrX 94373034 94373173 -68226757 - L1MC/D LINE L1 -1526 4620 4475 365 98 0 0 chrX 94373467 94373518 -68226412 - MADE1 DNA Mariner 0 80 30 245 290 0 0 chrX 94373593 94373662 -68226268 - L1MC/D LINE L1 -2061 4085 4017 381 258 23 15 chrX 94373726 94373858 -68226072 - L1MEc LINE L1 -1446 4769 4637 1070 172 84 5 chrX 94373884 94374099 -68225831 + MER46A DNA MER2_type 5 236 0 608 281 0 0 chrX 94374121 94374267 -68225663 - L1MEc LINE L1 -2006 4209 4064 1790 254 38 38 chrX 94374385 94375467 -68224463 + L1MA6 LINE L1 11 2458 -5107 301 200 0 0 chrX 94375467 94375522 -68224408 + AluJ/FLAM SINE Alu 25 79 -223 3559 212 20 16 chrX 94375536 94377407 -68222523 + L1MA6 LINE L1 3140 5502 -2063 1808 227 58 58 chrX 94377419 94378172 -68221758 + L1MA6 LINE L1 6967 7719 0 1349 247 56 49 chrX 94378186 94378871 -68221059 - L1MEc LINE L1 -2317 3898 3205 2693 83 88 5 chrX 94378871 94379239 -68220691 + MLT2A1 LTR ERVL 2 409 -35 195 42 0 0 chrX 94379239 94379263 -68220667 + (TA)n Simple_repeat Simple_repeat 2 25 0 2693 83 88 5 chrX 94379263 94379303 -68220627 + MLT2A1 LTR ERVL 409 444 0 1349 247 56 49 chrX 94379303 94379419 -68220511 - L1MEc LINE L1 -3010 3205 3091 826 217 49 12 chrX 94379399 94379618 -68220312 - L1PA16 LINE L1 -10 6156 5936 * 320 290 62 13 chrX 94379638 94379862 -68220068 - L1MEc LINE L1 -3149 3066 2832 215 31 31 0 chrX 94381358 94381390 -68218540 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1254 51 0 0 chrX 94381390 94381548 -68218382 - L1PA5 LINE L1 -16 6138 5981 6005 28 12 0 chrX 94381548 94382329 -68217601 + L1PA5 LINE L1 5184 5972 -182 772 278 39 39 chrX 94382327 94382787 -68217143 - L1MEc LINE L1 -3372 2843 2384 * 642 277 24 10 chrX 94382896 94383102 -68216828 - L1ME3A LINE L1 -1 6169 5961 1181 278 38 5 chrX 94383136 94383507 -68216423 + L1ME3A LINE L1 5514 5896 -274 237 244 104 7 chrX 94383549 94383684 -68216246 - L1MEc LINE L1 -4110 2286 2139 249 242 61 45 chrX 94384102 94384234 -68215696 - L1M4 LINE L1 -3789 2357 2224 209 56 0 28 chrX 94384495 94384531 -68215399 + (CA)n Simple_repeat Simple_repeat 2 36 0 589 339 46 56 chrX 94384853 94385283 -68214647 - HAL1b LINE L1 -674 1655 1222 2443 113 3 3 chrX 94385283 94385636 -68214294 - THE1A LTR MaLR 0 355 3 11287 99 6 2 chrX 94385638 94387211 -68212719 - THE1A-int LTR MaLR 0 1580 1 2656 70 6 6 chrX 94387211 94387566 -68212364 - THE1A LTR MaLR 0 355 1 589 339 46 56 chrX 94387566 94387721 -68212209 - HAL1b LINE L1 -1106 1223 278 266 306 148 0 chrX 94389551 94389659 -68210271 - L2 LINE L2 -7 3306 3183 283 335 55 88 chrX 94389737 94390044 -68209886 - L2 LINE L2 -10 3262 2966 204 176 0 39 chrX 94390261 94390312 -68209618 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 518 328 10 10 chrX 94390319 94390511 -68209419 + MIR SINE MIR 71 262 0 399 348 23 7 chrX 94390571 94390720 -68209210 + MIR3 SINE MIR 4 154 -68 312 310 55 50 chrX 94391597 94391797 -68208133 + L2 LINE L2 3113 3313 0 24 0 0 0 chrX 94391884 94391908 -68208022 + AT_rich Low_complexity Low_complexity 1 24 0 675 262 0 7 chrX 94392106 94392251 -68207679 - LTR16A LTR ERVL -148 302 159 697 361 25 28 chrX 94392635 94393067 -68206863 - ERVL LTR ERVL -507 5257 4827 431 70 35 12 chrX 94393091 94393177 -68206753 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 3934 303 58 61 chrX 94393743 94395501 -68204429 - ERVL LTR ERVL -1212 3784 2022 2742 142 7 2 chrX 94395501 94395925 -68204005 + MSTA LTR MaLR 2 427 -1 3934 303 58 61 chrX 94395925 94396073 -68203857 - ERVL LTR ERVL -2974 2022 1875 2574 123 12 7 chrX 94396073 94396487 -68203443 - L1MA3 LINE L1 0 6305 5890 3934 303 58 61 chrX 94396487 94396870 -68203060 - ERVL LTR ERVL -3121 1875 1433 414 129 0 29 chrX 94397048 94397118 -68202812 + (TG)n Simple_repeat Simple_repeat 1 68 0 634 163 0 43 chrX 94397118 94397302 -68202628 + (TA)n Simple_repeat Simple_repeat 1 176 0 314 268 10 21 chrX 94397333 94397430 -68202500 + L1MC4 LINE L1 6614 6709 -1333 253 239 56 14 chrX 94397592 94397663 -68202267 - MER58 DNA MER1_type 0 2420 2347 664 325 116 51 chrX 94398464 94399177 -68200753 - L2 LINE L2 0 3313 2544 447 307 15 15 chrX 94400150 94400287 -68199643 + MIR SINE MIR 11 147 -115 280 314 59 10 chrX 94400305 94400407 -68199523 - L2 LINE L2 -4 3268 3162 298 274 19 57 chrX 94400415 94400521 -68199409 + MIR SINE MIR 150 251 -11 22 0 0 0 chrX 94400640 94400662 -68199268 + AT_rich Low_complexity Low_complexity 1 22 0 617 204 9 0 chrX 94400957 94401070 -68198860 + Tigger3(Golem) DNA MER2_type 4 117 -2912 * 3616 139 61 33 chrX 94401052 94401347 -68198583 + Tigger3(Golem) DNA MER2_type 2277 2562 -466 2212 93 0 13 chrX 94401347 94401659 -68198271 + AluSx SINE Alu 3 310 -2 3616 139 61 33 chrX 94401659 94402082 -68197848 + Tigger3(Golem) DNA MER2_type 2562 3015 -13 4700 180 45 7 chrX 94402093 94403370 -68196560 - L1M2 LINE L1 -664 5648 4329 3282 185 88 9 chrX 94403391 94404072 -68195858 - L1PA8 LINE L1 -20 6152 5418 460 157 0 0 chrX 94404071 94404154 -68195776 - L1M2 LINE L1 -1811 4335 4253 * 450 330 145 15 chrX 94404278 94404656 -68195274 + L2 LINE L2 2721 3150 -163 1052 57 17 16 chrX 94404677 94404922 -68195008 + (TCTA)n Simple_repeat Simple_repeat 1 245 0 241 372 45 26 chrX 94405978 94406134 -68193796 + MIR SINE MIR 48 206 -56 408 40 0 0 chrX 94406427 94406477 -68193453 + (TA)n Simple_repeat Simple_repeat 2 51 0 312 357 53 58 chrX 94406484 94406896 -68193034 - L2 LINE L2 -1192 2122 1713 620 241 138 6 chrX 94407273 94407447 -68192483 + MIR SINE MIR 54 250 -12 184 360 84 36 chrX 94407529 94407804 -68192126 - L2 LINE L2 -2422 892 605 24 0 0 0 chrX 94407955 94407979 -68191951 + AT_rich Low_complexity Low_complexity 1 24 0 1794 164 24 46 chrX 94407986 94408357 -68191573 + MLT1A1 LTR MaLR 1 363 -2 25 0 0 0 chrX 94409720 94409745 -68190185 + AT_rich Low_complexity Low_complexity 1 25 0 2513 226 9 51 chrX 94410070 94410335 -68189595 + MER90 LTR ERV1 7 281 -333 1425 192 86 150 chrX 94410335 94411001 -68188929 - MLT1E2 LTR MaLR -2 624 2 2513 226 9 51 chrX 94411001 94411035 -68188895 + MER90 LTR ERV1 281 315 -299 3070 63 78 0 chrX 94411035 94411410 -68188520 + MLT2A1 LTR ERVL 1 412 -32 294 29 0 0 chrX 94411410 94411445 -68188485 + (TA)n Simple_repeat Simple_repeat 2 36 0 3070 63 78 0 chrX 94411445 94411481 -68188449 + MLT2A1 LTR ERVL 412 444 0 2513 226 9 51 chrX 94411481 94411695 -68188235 + MER90 LTR ERV1 315 493 -121 540 203 55 16 chrX 94411695 94411877 -68188053 - MER53 DNA DNA 0 189 1 2513 226 9 51 chrX 94411877 94411993 -68187937 + MER90 LTR ERV1 493 612 -2 1828 164 24 32 chrX 94411999 94412376 -68187554 - THE1C LTR MaLR -1 374 1 189 147 0 0 chrX 94412551 94412585 -68187345 + (CA)n Simple_repeat Simple_repeat 2 35 0 240 200 0 0 chrX 94412631 94412691 -68187239 + (TATG)n Simple_repeat Simple_repeat 4 63 0 3130 283 60 14 chrX 94412692 94413935 -68185995 + L1ME LINE L1 123 1423 -4973 1435 261 109 14 chrX 94414061 94414900 -68185030 + L1ME LINE L1 4697 5603 -632 2124 255 31 26 chrX 94414902 94415638 -68184292 - L1M4c LINE L1 -2295 4087 3348 22 80 0 0 chrX 94416165 94416215 -68183715 + AT_rich Low_complexity Low_complexity 1 50 0 832 195 35 6 chrX 94416343 94416512 -68183418 - MER45A DNA AcHobo -4 174 1 2772 211 46 21 chrX 94416729 94417528 -68182402 - L1M4c LINE L1 -3038 3344 2526 505 228 94 6 chrX 94417500 94417680 -68182250 - L1M4c LINE L1 -4183 2201 2006 * 760 256 223 9 chrX 94417687 94417896 -68182034 - L1M4c LINE L1 -4606 1778 1615 1066 39 0 0 chrX 94417896 94418026 -68181904 - L1PA5 LINE L1 -2 6152 6023 760 256 223 9 chrX 94418026 94418152 -68181778 - L1M4c LINE L1 -4769 1615 1371 1207 276 29 9 chrX 94418196 94418537 -68181393 - MER41E LTR ERV1 -152 360 13 27 29 0 0 chrX 94418786 94418820 -68181110 + AT_rich Low_complexity Low_complexity 1 34 0 413 209 0 0 chrX 94418942 94419028 -68180902 - L1M4c LINE L1 -5031 1353 1268 261 174 0 0 chrX 94419135 94419181 -68180749 - L1MC4 LINE L1 -1340 6702 6657 180 0 0 0 chrX 94420263 94420283 -68179647 + (A)n Simple_repeat Simple_repeat 1 20 0 292 152 62 27 chrX 94420963 94421075 -68178855 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 21 0 0 0 chrX 94421163 94421184 -68178746 + AT_rich Low_complexity Low_complexity 1 21 0 384 316 5 77 chrX 94423481 94423677 -68176253 + MIR3 SINE MIR 17 198 -10 307 317 40 0 chrX 94424052 94424153 -68175777 - L1ME3A LINE L1 -24 6146 6042 279 0 0 0 chrX 94424190 94424221 -68175709 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1461 183 45 11 chrX 94424226 94424494 -68175436 - AluJo SINE Alu -35 277 1 198 0 0 0 chrX 94424703 94424725 -68175205 + (T)n Simple_repeat Simple_repeat 1 22 0 351 0 0 0 chrX 94425327 94425366 -68174564 + (TTG)n Simple_repeat Simple_repeat 1 39 0 771 187 0 60 chrX 94425366 94425532 -68174398 - FAM SINE Alu -19 156 1 3799 114 2 5 chrX 94426300 94426870 -68173060 + L1PA13 LINE L1 5593 6160 -3 222 267 27 0 chrX 94428164 94428239 -68171691 + (TA)n Simple_repeat Simple_repeat 2 78 0 6015 162 10 17 chrX 94428817 94430340 -68169590 + L1MA2 LINE L1 4127 5639 -665 5620 92 8 39 chrX 94430340 94431904 -68168026 - L1PA8 LINE L1 -13 6159 4702 6015 162 10 17 chrX 94431904 94432292 -68167638 + L1MA2 LINE L1 5639 6028 -276 1251 179 89 53 chrX 94432293 94432651 -68167279 + THE1C LTR MaLR 5 375 0 8048 162 89 13 chrX 94432653 94434119 -68165811 + THE1C-int LTR MaLR 3 1580 0 1628 171 52 30 chrX 94434119 94434481 -68165449 + THE1C LTR MaLR 1 370 -5 4167 139 26 16 chrX 94434485 94434722 -68165208 + L1MA2 LINE L1 5541 5774 -530 1862 164 0 20 chrX 94434722 94435026 -68164904 + AluSx SINE Alu 1 298 -14 4167 139 26 16 chrX 94435026 94435544 -68164386 + L1MA2 LINE L1 5774 6304 0 1706 224 46 49 chrX 94435552 94436477 -68163453 + L1MEc LINE L1 1415 2419 -3965 729 218 5 48 chrX 94436481 94436687 -68163243 + L1M3 LINE L1 4482 4678 -1468 628 234 21 0 chrX 94436685 94436826 -68163104 + L1MB3 LINE L1 5963 6106 -77 * 1601 231 30 14 chrX 94436824 94437402 -68162528 + L1M3 LINE L1 5045 5633 -547 254 325 12 0 chrX 94437410 94437490 -68162440 - L2 LINE L2 -8 3305 3225 21 0 0 0 chrX 94439062 94439083 -68160847 + AT_rich Low_complexity Low_complexity 1 21 0 7615 26 3 0 chrX 94440749 94441835 -68158095 - L1PA3 LINE L1 -3 6152 5066 1633 255 22 15 chrX 94442169 94442581 -68157349 - MLT1C LTR MaLR 0 467 53 1535 226 48 64 chrX 94442607 94443028 -68156902 + MLT2D LTR ERVL 1 414 0 2048 201 84 9 chrX 94443031 94443597 -68156333 + MLT1-int LTR MaLR 4 732 -639 242 314 35 0 chrX 94443717 94443803 -68156127 + MLT1-int LTR MaLR 676 764 -971 523 323 43 47 chrX 94495254 94495554 -68104376 - LTR16A LTR ERVL -8 442 144 550 287 38 0 chrX 94495987 94496144 -68103786 + MIR SINE MIR 80 242 -20 451 305 35 5 chrX 94496602 94496802 -68103128 + L1ME LINE L1 5534 5739 -382 1058 40 0 0 chrX 94496899 94497023 -68102907 + L1P2 LINE L1 5522 5645 -509 1905 139 0 30 chrX 94498195 94498496 -68101434 + AluSx SINE Alu 3 294 -18 24 0 0 0 chrX 94499009 94499033 -68100897 + AT_rich Low_complexity Low_complexity 1 24 0 295 297 158 0 chrX 94500474 94500575 -68099355 + L2 LINE L2 3155 3271 -1 1923 127 0 7 chrX 94500744 94501027 -68098903 + AluSx SINE Alu 1 281 -31 10986 92 15 1 chrX 94501499 94503838 -68096092 - L1PA7 LINE L1 -2 6152 3786 293 164 75 25 chrX 94504538 94504697 -68095233 + (TA)n Simple_repeat Simple_repeat 2 168 0 203 132 77 0 chrX 94504754 94504845 -68095085 + (TA)n Simple_repeat Simple_repeat 2 99 0 1513 163 163 29 chrX 94504851 94505226 -68094704 + MSTB1 LTR MaLR 4 428 -4 216 184 0 0 chrX 94505236 94505274 -68094656 + GA-rich Low_complexity Low_complexity 2 39 0 290 65 0 22 chrX 94505285 94505331 -68094599 + (TG)n Simple_repeat Simple_repeat 2 46 0 301 242 72 65 chrX 94505577 94505730 -68094200 - L1MEd LINE L1 -5017 1102 949 2858 151 71 20 chrX 94505810 94506347 -68093583 + L1PB3 LINE L1 5584 6147 -7 927 245 121 57 chrX 94506795 94507167 -68092763 + MSTD LTR MaLR 1 396 0 4462 181 26 8 chrX 94507238 94508262 -68091668 + L1PBa LINE L1 972 2198 -4665 6137 222 19 13 chrX 94508262 94509993 -68089937 + L1PBa LINE L1 2563 4297 -2565 351 0 0 0 chrX 94510385 94510424 -68089506 + (TG)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chrX 94511572 94511600 -68088330 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chrX 94511717 94511743 -68088187 + (TG)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 94512650 94512673 -68087257 + AT_rich Low_complexity Low_complexity 1 23 0 4882 204 22 15 chrX 94513382 94514486 -68085444 - L1MC2 LINE L1 -9 6335 5225 13492 226 26 71 chrX 94514538 94516107 -68083823 - L1PA13 LINE L1 -1 7600 5962 1909 120 33 0 chrX 94516107 94516381 -68083549 + AluSx SINE Alu 22 304 -8 13492 226 26 71 chrX 94516381 94518287 -68081643 - L1PA13 LINE L1 -1639 5962 3972 1942 133 23 72 chrX 94518287 94518678 -68081252 - THE1C LTR MaLR 0 375 4 13492 226 26 71 chrX 94518678 94522770 -68077160 - L1PA13 LINE L1 -3629 3972 7 2253 276 16 3 chrX 94522768 94523474 -68076456 - L1MC2 LINE L1 -926 5220 4506 * 736 199 20 152 chrX 94523640 94523942 -68075988 + MLT1A1 LTR MaLR 104 365 0 5927 227 67 43 chrX 94523943 94525637 -68074293 + MLT1A1-int LTR MaLR 2 1735 0 1093 206 27 124 chrX 94525639 94526041 -68073889 + MLT1A1 LTR MaLR 3 365 0 2130 269 64 33 chrX 94526049 94526723 -68073207 - L1MC4a LINE L1 -329 7666 6963 252 0 0 0 chrX 94526723 94526751 -68073179 + (TG)n Simple_repeat Simple_repeat 2 29 0 2130 269 64 33 chrX 94526751 94527103 -68072827 - L1MC4a LINE L1 -1032 6963 6623 369 0 0 0 chrX 94527149 94527190 -68072740 + (TA)n Simple_repeat Simple_repeat 2 42 0 1846 273 81 19 chrX 94527307 94527973 -68071957 + L1ME4a LINE L1 962 1585 -4799 183 42 0 0 chrX 94527973 94527997 -68071933 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1846 273 81 19 chrX 94527997 94528153 -68071777 + L1ME4a LINE L1 1585 1730 -4654 2394 65 3 3 chrX 94528153 94528462 -68071468 + AluY SINE Alu 1 309 -2 1846 273 81 19 chrX 94528462 94528526 -68071404 + L1ME4a LINE L1 1730 1904 -4480 2897 258 39 65 chrX 94528555 94529657 -68070273 + L1ME4a LINE L1 3034 4094 -2288 2214 116 0 0 chrX 94529657 94529968 -68069962 + AluSx SINE Alu 1 311 -1 2897 258 39 65 chrX 94529968 94530260 -68069670 + L1ME4a LINE L1 4094 4392 -1990 2265 209 27 1 chrX 94530253 94530990 -68068940 + L1ME4a LINE L1 5141 5902 -576 * 1059 196 24 125 chrX 94530996 94531284 -68068646 + MLT1B LTR MaLR 87 338 -52 1943 129 0 45 chrX 94531284 94531595 -68068335 + AluSx SINE Alu 1 297 -15 1059 196 24 125 chrX 94531595 94531643 -68068287 + MLT1B LTR MaLR 338 389 -1 530 199 168 3 chrX 94531648 94531780 -68068150 + MLT2D LTR ERVL 1 138 -276 2336 288 37 18 chrX 94532058 94532845 -68067085 + L1M3b LINE L1 859 1660 -4621 2779 78 0 0 chrX 94532945 94533315 -68066615 + L1PA6 LINE L1 5785 6154 0 1259 227 92 6 chrX 94533334 94533651 -68066279 + MER2 DNA MER2_type 1 344 0 307 227 86 74 chrX 94533742 94533878 -68066052 + L1ME4a LINE L1 6189 6329 -28 2085 126 26 9 chrX 94533878 94534227 -68065703 + THE1A LTR MaLR 1 355 0 307 227 86 74 chrX 94534227 94534253 -68065677 + L1ME4a LINE L1 6329 6353 -4 22 0 0 0 chrX 94534687 94534709 -68065221 + AT_rich Low_complexity Low_complexity 1 22 0 234 136 0 0 chrX 94535864 94535908 -68064022 + (GA)n Simple_repeat Simple_repeat 1 44 0 220 276 60 75 chrX 94536323 94536457 -68063473 - MIR SINE MIR -50 212 81 249 337 111 23 chrX 94536652 94536824 -68063106 + MIR SINE MIR 70 256 -6 22 35 0 0 chrX 94537696 94537725 -68062205 + AT_rich Low_complexity Low_complexity 1 29 0 17572 215 36 8 chrX 94538433 94544932 -68054998 - L1PA13 LINE L1 -3 6811 2 1507 180 56 51 chrX 94544986 94545359 -68054571 + THE1C LTR MaLR 1 375 0 8965 146 52 10 chrX 94545361 94546868 -68053062 + THE1C-int LTR MaLR 3 1572 -8 1660 146 54 43 chrX 94546875 94547244 -68052686 + THE1C LTR MaLR 3 375 0 257 140 40 0 chrX 94547714 94547764 -68052166 + L1MC4 LINE L1 6652 6703 -1339 246 229 0 62 chrX 94547790 94547886 -68052044 + L1MC4 LINE L1 6614 6703 -1339 203 133 0 0 chrX 94547973 94548003 -68051927 + (GAA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chrX 94548455 94548477 -68051453 + AT_rich Low_complexity Low_complexity 1 22 0 2642 96 3 6 chrX 94548526 94548891 -68051039 + THE1B LTR MaLR 1 364 0 1481 107 21 160 chrX 94548891 94549228 -68050702 + THE1B-int LTR MaLR 1 290 -1290 315 116 0 0 chrX 94549234 94549277 -68050653 - THE1-int LTR MaLR -1235 345 303 * 5328 118 32 4 chrX 94549271 94550051 -68049879 + THE1B-int LTR MaLR 779 1580 0 2413 130 6 6 chrX 94550053 94550415 -68049515 + THE1B LTR MaLR 3 364 0 184 289 0 0 chrX 94551048 94551093 -68048837 + MIR SINE MIR 216 260 -2 267 103 0 0 chrX 94551271 94551310 -68048620 + (CA)n Simple_repeat Simple_repeat 2 40 0 6511 170 28 16 chrX 94551317 94552602 -68047328 - HSMAR2 DNA Mariner -1 1301 1 1603 201 46 0 chrX 94552634 94552983 -68046947 + MER47A DNA MER2_type 2 366 0 746 219 0 66 chrX 94553229 94553412 -68046518 - MER5B DNA MER1_type -7 171 1 767 344 188 16 chrX 94553412 94554150 -68045780 + L3 LINE CR1 551 1415 -162 565 217 127 53 chrX 94554530 94554719 -68045211 - MSTD LTR MaLR 0 396 194 2303 87 0 3 chrX 94554754 94555103 -68044827 + AluSg SINE Alu 1 348 0 329 243 0 0 chrX 94555113 94555183 -68044747 - MSTD LTR MaLR -219 177 108 7301 171 31 39 chrX 94555289 94557800 -68042130 + L1PB2 LINE L1 3663 6150 -1 507 73 0 0 chrX 94557803 94558088 -68041842 + (CA)n Simple_repeat Simple_repeat 1 285 0 3600 104 39 0 chrX 94557840 94558020 -68041910 + L1PB1 LINE L1 5593 5765 -386 507 73 0 0 chrX 94558020 94558088 -68041842 + (CA)n Simple_repeat Simple_repeat 2 69 0 3600 104 39 0 chrX 94558088 94558445 -68041485 + L1PB1 LINE L1 5765 6151 0 258 257 71 107 chrX 94558945 94559085 -68040845 - MIR SINE MIR -47 215 81 279 0 0 0 chrX 94559894 94559925 -68040005 + (TG)n Simple_repeat Simple_repeat 2 32 0 27 29 0 0 chrX 94560008 94560042 -68039888 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chrX 94560220 94560251 -68039679 + AT_rich Low_complexity Low_complexity 1 31 0 1638 285 63 61 chrX 94560950 94562003 -68037927 + L1MDa LINE L1 19 1216 -5324 2793 189 42 71 chrX 94562012 94562839 -68037091 + L1MDa LINE L1 1516 2318 -4222 461 186 124 0 chrX 94562843 94562956 -68036974 - L1M1 LINE L1 -3988 3577 3451 * 478 208 30 18 chrX 94562955 94563123 -68036807 + L1MDa LINE L1 2326 2495 -4045 801 188 0 7 chrX 94563177 94563321 -68036609 - Tigger4(Zombi) DNA MER2_type -1 2730 2588 18796 193 24 8 chrX 94563337 94570915 -68029015 - L1MA1 LINE L1 -4 7717 16 12955 161 26 41 chrX 94570915 94572995 -68026935 - Tigger4(Zombi) DNA MER2_type -130 2601 484 2125 133 0 0 chrX 94572995 94573297 -68026633 - AluSx SINE Alu -10 302 1 12955 161 26 41 chrX 94573297 94573774 -68026156 - Tigger4(Zombi) DNA MER2_type -2247 484 1 1961 262 59 29 chrX 94573774 94574485 -68025445 + L1MDa LINE L1 2524 3212 -3328 2227 114 0 7 chrX 94574485 94574792 -68025138 + AluSq SINE Alu 1 305 -8 180 0 0 0 chrX 94574792 94574812 -68025118 + (TA)n Simple_repeat Simple_repeat 2 21 0 1961 262 59 29 chrX 94574812 94575098 -68024832 + L1MDa LINE L1 3211 3552 -2988 407 345 90 43 chrX 94575185 94575761 -68024169 + L2 LINE L2 2214 2816 -498 234 337 111 6 chrX 94576093 94576265 -68023665 + MIR SINE MIR 73 262 0 4273 109 2 5 chrX 94576432 94577055 -68022875 - L1PA14 LINE L1 -3 6158 5538 378 304 107 0 chrX 94577147 94577259 -68022671 - L2 LINE L2 -8 3305 3182 862 198 0 0 chrX 94578221 94578388 -68021542 - L1MB1 LINE L1 -1 6167 6001 1594 170 50 29 chrX 94578389 94578809 -68021121 + MLT2B1 LTR ERVL 2 480 -40 189 0 0 0 chrX 94578914 94578935 -68020995 + (TG)n Simple_repeat Simple_repeat 2 22 0 24552 128 51 33 chrX 94578935 94584779 -68015151 - L1PA8 LINE L1 -11 6161 12 204 40 0 0 chrX 94585535 94585560 -68014370 + (TG)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chrX 94586907 94586935 -68012995 + AT_rich Low_complexity Low_complexity 1 28 0 876 165 6 12 chrX 94587321 94587485 -68012445 - L1MA4A LINE L1 -33 6270 6108 3435 129 52 16 chrX 94588009 94588588 -68011342 + MER4A LTR ERV1 1 600 0 5452 127 14 9 chrX 94589720 94590853 -68009077 + L1PA13 LINE L1 5021 6155 -8 1430 279 68 59 chrX 94590894 94591882 -68008048 - HAL1 LINE L1 -111 2396 1400 1839 142 156 13 chrX 94591898 94592271 -68007659 + MSTA LTR MaLR 1 426 -2 8045 188 19 31 chrX 94592273 94593944 -68005986 + MSTA-int LTR MaLR 1 1651 0 1730 174 148 11 chrX 94593947 94594320 -68005610 + MSTA LTR MaLR 5 428 0 552 247 0 70 chrX 94594343 94594529 -68005401 + MIR SINE MIR 81 253 -9 1770 280 147 46 chrX 94594539 94594903 -68005027 - HAL1 LINE L1 -1120 1387 1061 231 36 0 0 chrX 94594903 94594931 -68004999 + (TA)n Simple_repeat Simple_repeat 2 29 0 1770 280 147 46 chrX 94594931 94595185 -68004745 - HAL1 LINE L1 -1446 1061 834 490 180 10 0 chrX 94595185 94595285 -68004645 - L1MA6 LINE L1 -5 6295 6195 1770 280 147 46 chrX 94595285 94595597 -68004333 - HAL1 LINE L1 -1673 834 555 218 31 0 31 chrX 94595597 94595629 -68004301 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 1770 280 147 46 chrX 94595629 94595956 -68003974 - HAL1 LINE L1 -1952 555 1 22 70 0 0 chrX 94596557 94596600 -68003330 + AT_rich Low_complexity Low_complexity 1 43 0 2156 96 6 6 chrX 94597999 94598312 -68001618 - AluSq SINE Alu 0 313 1 445 331 107 29 chrX 94598701 94598943 -68000987 - MIR SINE MIR -1 261 1 5392 171 20 19 chrX 94599576 94601017 -67998913 - L1MA8 LINE L1 -3 6288 4844 1144 128 25 10 chrX 94601014 94601210 -67998720 - L1MC2 LINE L1 -140 6204 6006 * 7565 206 8 8 chrX 94601207 94602861 -67997069 - L1 LINE L1 -776 5370 3716 2379 250 44 12 chrX 94602881 94604212 -67995718 - L1MC2 LINE L1 -525 5819 4442 2834 137 23 2 chrX 94604351 94604824 -67995106 - L1PA13 LINE L1 -15 6799 6317 1430 137 7 3 chrX 94604824 94605109 -67994821 - THE1B LTR MaLR 0 364 1 9967 123 40 3 chrX 94605109 94606632 -67993298 - THE1B-int LTR MaLR 0 1580 1 2201 157 6 3 chrX 94606632 94606995 -67992935 - THE1B LTR MaLR 0 364 1 17279 222 20 12 chrX 94606995 94612186 -67987744 - L1PA13 LINE L1 -491 6321 1080 2721 278 30 6 chrX 94612216 94613203 -67986727 - L1MC2 LINE L1 -1696 4450 3440 * 13863 199 50 9 chrX 94613197 94619055 -67980875 - L1PB1 LINE L1 -1 6866 775 1742 292 43 17 chrX 94619061 94619934 -67979996 - L1MC2 LINE L1 -2994 3152 2257 3346 119 10 6 chrX 94619934 94620438 -67979492 + MER9 LTR ERVK 1 506 -5 8634 214 16 100 chrX 94620461 94622861 -67977069 + L1M2 LINE L1 2 2199 -4650 723 245 7 7 chrX 94622862 94623017 -67976913 - L1PB1 LINE L1 -6632 220 66 2461 161 19 23 chrX 94623139 94623569 -67976361 - MSTA LTR MaLR 0 428 1 260 222 16 32 chrX 94623715 94623778 -67976152 + L1M4c LINE L1 2 63 -7105 271 295 29 36 chrX 94624237 94624376 -67975554 + L1M4c LINE L1 1323 1460 -5709 2179 215 54 14 chrX 94624513 94625261 -67974669 + L1MB3 LINE L1 5064 5848 -335 1054 167 14 5 chrX 94625270 94625485 -67974445 + L1MB3 LINE L1 5952 6168 -15 1197 102 0 0 chrX 94625581 94625738 -67974192 + AluSg/x SINE Alu 145 301 -9 473 261 73 14 chrX 94625881 94626099 -67973831 + L1MD3 LINE L1 7765 7995 0 27 0 0 0 chrX 94626276 94626303 -67973627 + AT_rich Low_complexity Low_complexity 1 27 0 617 206 27 73 chrX 94626431 94626650 -67973280 - L1MC5 LINE L1 -52 7909 7701 1150 246 65 43 chrX 94626655 94627208 -67972722 - L1MC5 LINE L1 -123 7838 7274 954 216 0 0 chrX 94627435 94627625 -67972305 - AluSx SINE Alu -2 308 119 225 213 0 0 chrX 94627641 94627688 -67972242 - AluSq/x SINE Alu -135 165 119 802 149 0 0 chrX 94627720 94627841 -67972089 - AluSq/x SINE Alu -190 123 3 1710 63 5 0 chrX 94627912 94628134 -67971796 + AluY SINE Alu 87 309 -2 378 218 142 76 chrX 94628146 94628343 -67971587 - L1MC5 LINE L1 -843 7118 6909 1848 220 23 10 chrX 94628462 94628853 -67971077 + MSTD LTR MaLR 1 396 0 21 82 0 0 chrX 94629130 94629179 -67970751 + AT_rich Low_complexity Low_complexity 1 49 0 4002 60 4 0 chrX 94629201 94629722 -67970208 - L1PA5 LINE L1 -930 5216 4694 7024 57 5 1 chrX 94629722 94630643 -67969287 + L1PA5 LINE L1 5228 6151 -3 538 226 28 40 chrX 94630782 94630959 -67968971 - L1MC5 LINE L1 -1872 5936 5762 432 200 18 10 chrX 94631154 94631273 -67968657 - L1MA4A LINE L1 0 6269 6044 294 143 0 0 chrX 94631255 94631304 -67968626 - L1MA4A LINE L1 -180 6123 6075 * 3626 208 22 41 chrX 94631471 94632417 -67967513 - L1MB3 LINE L1 -2 6181 5254 1380 115 0 0 chrX 94632439 94632630 -67967300 + AluSg/x SINE Alu 122 312 0 5918 107 55 23 chrX 94632637 94633605 -67966325 + L1MA2 LINE L1 5297 6295 -9 566 313 64 12 chrX 94633616 94633961 -67965969 - L1MB3 LINE L1 -1240 4906 4544 391 279 153 11 chrX 94633961 94634144 -67965786 + MIR SINE MIR 42 250 -12 2426 271 204 3 chrX 94634218 94634971 -67964959 + L1M2 LINE L1 2 906 -5943 4195 237 75 9 chrX 94634971 94636126 -67963804 - L1MB3 LINE L1 -2214 3932 2703 * 6101 120 14 6 chrX 94636125 94636182 -67963748 + L1PB1 LINE L1 5109 5164 -987 192 97 0 0 chrX 94636182 94636213 -67963717 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 6101 120 14 6 chrX 94636213 94637189 -67962741 + L1PB1 LINE L1 5164 6151 0 2000 190 20 0 chrX 94637199 94637381 -67962549 + L1MA4A LINE L1 5593 5770 -533 207 0 0 0 chrX 94637381 94637404 -67962526 + (TA)n Simple_repeat Simple_repeat 2 24 0 2000 190 20 0 chrX 94637404 94637616 -67962314 + L1MA4A LINE L1 5770 5995 -308 1519 36 27 22 chrX 94837623 94837848 -67762082 + HERVH LTR ERV1 7488 7713 0 1328 154 85 111 chrX 94837848 94838308 -67761622 + LTR7 LTR ERV1 1 448 -2 1209 69 0 38 chrX 94838310 94838469 -67761461 - AluY SINE Alu -158 153 1 3182 133 6 8 chrX 94838649 94839136 -67760794 - LTR29 LTR ERV1 0 622 137 1526 240 104 43 chrX 94839721 94840329 -67759601 - MER50 LTR ERV1 0 734 90 214 174 0 0 chrX 94840485 94840531 -67759399 + (TA)n Simple_repeat Simple_repeat 2 47 0 1898 196 144 37 chrX 94840597 94841306 -67758624 - LTR1B LTR ERV1 -13 772 2 457 391 13 13 chrX 94842221 94842446 -67757484 - MIR SINE MIR -35 227 3 3188 128 61 50 chrX 94842543 94843146 -67756784 - MER4B LTR ERV1 0 610 1 2806 152 48 29 chrX 94843162 94843742 -67756188 - LTR49 LTR ERV1 -4 591 1 251 241 0 0 chrX 94844197 94844251 -67755679 + (TAA)n Simple_repeat Simple_repeat 3 56 0 678 277 98 18 chrX 94844259 94844388 -67755542 - MIR SINE MIR -6 256 139 4014 139 10 2 chrX 94844388 94845015 -67754915 + MER41B LTR ERV1 4 635 0 678 277 98 18 chrX 94845015 94845109 -67754821 - MIR SINE MIR -123 139 15 222 118 0 0 chrX 94845742 94845776 -67754154 + (CA)n Simple_repeat Simple_repeat 1 34 0 517 223 185 32 chrX 94846214 94846371 -67753559 - MER5A DNA MER1_type 0 189 9 284 238 107 12 chrX 94846474 94846558 -67753372 + MER5A DNA MER1_type 98 189 0 810 223 18 6 chrX 94846640 94846806 -67753124 + MER5B DNA MER1_type 11 178 0 33 0 0 0 chrX 94847067 94847100 -67752830 + AT_rich Low_complexity Low_complexity 1 33 0 206 271 0 0 chrX 94847645 94847693 -67752237 - L2 LINE L2 -10 3303 3256 279 321 0 18 chrX 94849280 94849392 -67750538 + LTR40a LTR ERVL 6 115 -404 31621 43 35 2 chrX 94849392 94853381 -67746549 + L1P LINE L1 13 4130 -2016 639 123 66 0 chrX 94853539 94853645 -67746285 - L1PA14 LINE L1 -280 5881 5769 8464 137 2 2 chrX 94853706 94855797 -67744133 - L1PA10 LINE L1 -16 6152 4038 1226 83 52 0 chrX 94855797 94855989 -67743941 + L1MA1 LINE L1 6100 6302 0 8626 199 16 4 chrX 94855989 94858845 -67741085 + L1PA16 LINE L1 3279 6165 -1 234 0 0 0 chrX 94859220 94859246 -67740684 + (CA)n Simple_repeat Simple_repeat 1 26 0 461 312 29 0 chrX 94859756 94859894 -67740036 - L2 LINE L2 0 3313 3172 3790 111 66 4 chrX 94860082 94860679 -67739251 - MER39B LTR ERV1 0 625 8 219 88 0 0 chrX 94860910 94860944 -67738986 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 302 19 0 chrX 94861287 94861340 -67738590 + L2 LINE L2 3154 3207 -65 * 416 235 59 10 chrX 94861336 94861438 -67738492 - L2 LINE L2 0 3313 3207 215 304 25 13 chrX 94861757 94861836 -67738094 - MIR SINE MIR -4 258 179 3706 101 15 5 chrX 94862617 94863233 -67736697 + L1PB1 LINE L1 5163 5782 -369 2601 99 0 3 chrX 94863344 94863356 -67736574 + L1PB1 LINE L1 5781 5792 -359 285 29 0 0 chrX 94863356 94863390 -67736540 + (CA)n Simple_repeat Simple_repeat 2 35 0 2601 99 0 3 chrX 94863390 94863749 -67736181 + L1PB1 LINE L1 5792 6151 0 438 243 29 0 chrX 94863783 94863886 -67736044 - Charlie8 DNA MER1_type -2231 186 81 623 254 66 41 chrX 94864464 94864661 -67735269 - MLT1B LTR MaLR 0 390 173 225 263 18 0 chrX 94864692 94864749 -67735181 + (TG)n Simple_repeat Simple_repeat 2 59 0 243 133 0 0 chrX 94864749 94864794 -67735136 + (GA)n Simple_repeat Simple_repeat 1 45 0 586 188 8 8 chrX 94864821 94864938 -67734992 - MLT1B LTR MaLR -218 156 40 786 177 14 7 chrX 94865716 94865863 -67734067 + L1ME LINE L1 5459 5606 -558 1788 134 27 30 chrX 94865864 94866193 -67733737 + L1MB4 LINE L1 5846 6173 -7 302 183 70 14 chrX 94866273 94866344 -67733586 + L1ME LINE L1 5601 5675 -489 257 0 30 0 chrX 94867151 94867184 -67732746 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chrX 94868290 94868319 -67731611 + AT_rich Low_complexity Low_complexity 1 29 0 506 206 79 32 chrX 94870343 94870469 -67729461 + MIR SINE MIR 28 159 -103 1922 197 105 13 chrX 94870697 94871153 -67728777 - MLT1D LTR MaLR 0 505 8 380 225 79 0 chrX 94871160 94871249 -67728681 - MIR SINE MIR -71 137 42 12155 203 87 36 chrX 94871256 94877720 -67722210 - L1MA4A LINE L1 -4 7001 1 440 259 163 11 chrX 94878452 94878722 -67721208 + L1ME4a LINE L1 5594 5904 -217 2096 218 21 34 chrX 94879288 94879849 -67720081 + L1MB7 LINE L1 5620 6173 -11 707 254 20 55 chrX 94880318 94880519 -67719411 - MER63A DNA MER1_type 0 210 17 1642 180 120 16 chrX 94881223 94881673 -67718257 - LTR54B LTR ERV1 -1 497 1 1133 218 95 30 chrX 94881961 94882361 -67717569 + LTR37A LTR ERV1 1 426 0 199 209 105 95 chrX 94882866 94882971 -67716959 - MER5B DNA MER1_type 0 178 73 25 31 0 0 chrX 94884103 94884135 -67715795 + AT_rich Low_complexity Low_complexity 1 32 0 480 297 40 0 chrX 94884558 94884706 -67715224 - MIR SINE MIR -4 258 105 233 163 0 0 chrX 94884982 94885025 -67714905 - MARNA DNA Mariner -343 243 201 957 178 61 20 chrX 94885304 94885501 -67714429 + MER3 DNA MER1_type 5 209 0 2020 167 5 38 chrX 94886299 94886671 -67713259 + L1MC1 LINE L1 5 364 -6062 945 228 14 24 chrX 94886668 94886962 -67712968 + L1MC1 LINE L1 3077 3367 -3059 * 6031 158 34 8 chrX 94886965 94888113 -67711817 + L1MC1 LINE L1 5433 6613 0 316 340 19 0 chrX 94888337 94888440 -67711490 - MER5B DNA MER1_type -43 135 31 284 105 0 0 chrX 94888964 94889002 -67710928 + L1MC/D LINE L1 5524 5561 -2434 22 56 0 0 chrX 94890285 94890321 -67709609 + AT_rich Low_complexity Low_complexity 1 36 0 13795 25 0 0 chrX 94890602 94892662 -67707268 + L1P1 LINE L1 3736 5794 -361 763 246 26 30 chrX 94893252 94893484 -67706446 - L1MB8 LINE L1 0 6178 5948 253 185 0 37 chrX 94893574 94893628 -67706302 - L2 LINE L2 0 3313 3262 21 36 0 0 chrX 94893934 94893962 -67705968 + AT_rich Low_complexity Low_complexity 1 28 0 720 187 8 0 chrX 94893963 94894086 -67705844 - FLAM_C SINE Alu -18 125 2 22 35 0 0 chrX 94894086 94894115 -67705815 + AT_rich Low_complexity Low_complexity 1 29 0 1600 247 78 37 chrX 94894248 94895028 -67704902 - L2 LINE L2 0 3313 2494 2145 100 4 0 chrX 94895183 94895508 -67704422 - AluSg SINE Alu 0 326 1 477 304 81 49 chrX 94895640 94896045 -67703885 - MLT1J LTR MaLR 0 511 56 2327 173 56 42 chrX 94896061 94896559 -67703371 - MLT1D LTR MaLR 0 505 1 212 356 122 9 chrX 94896800 94896915 -67703015 + L2 LINE L2 2383 2510 -804 250 300 36 36 chrX 94897571 94897681 -67702249 + L2 LINE L2 3198 3307 -6 1199 87 12 0 chrX 94898259 94898431 -67701499 + L1PA14 LINE L1 5985 6158 -3 767 287 34 34 chrX 94898431 94898699 -67701231 + MLT1A1 LTR MaLR 43 310 -55 2460 74 0 7 chrX 94898818 94899128 -67700802 - AluY SINE Alu -3 308 1 1615 162 61 4 chrX 94899129 94899288 -67700642 - AluJb SINE Alu -18 294 111 281 47 23 0 chrX 94899288 94899331 -67700599 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 1615 162 61 4 chrX 94899331 94899449 -67700481 - AluJb SINE Alu -201 111 1 21 36 0 0 chrX 94899885 94899913 -67700017 + AT_rich Low_complexity Low_complexity 1 28 0 2175 108 7 0 chrX 94900563 94900870 -67699060 - AluSx SINE Alu -3 309 1 1617 184 24 40 chrX 94901460 94901830 -67698100 - MLT1A1 LTR MaLR 0 365 2 2441 54 0 17 chrX 94902252 94902548 -67697382 - AluY SINE Alu -19 292 2 626 312 139 72 chrX 94903461 94904514 -67695416 - L2 LINE L2 -14 3299 2170 258 185 111 62 chrX 94904646 94904727 -67695203 + MIR SINE MIR 86 170 -92 262 323 10 0 chrX 94904819 94904915 -67695015 + MER103 DNA DNA 3 99 -67 237 156 22 0 chrX 94904915 94904960 -67694970 + MIR3 SINE MIR 150 195 -13 1062 239 91 18 chrX 94904966 94905315 -67694615 - LTR40b LTR ERVL -2 460 124 42668 35 21 1 chrX 94905351 94911383 -67688547 - L1PA3 LINE L1 0 6155 1 22 0 0 0 chrX 94911521 94911543 -67688387 + AT_rich Low_complexity Low_complexity 1 22 0 821 275 138 50 chrX 94911633 94912134 -67687796 + MLT1K LTR MaLR 26 570 -18 * 1501 195 7 24 chrX 94912130 94912428 -67687502 + MER58B DNA MER1_type 11 303 -38 2587 53 0 3 chrX 94912466 94912770 -67687160 - AluY SINE Alu -8 303 1 443 289 151 6 chrX 94913136 94913295 -67686635 - MIR SINE MIR -61 201 20 438 273 0 0 chrX 94913456 94913555 -67686375 + MER94 DNA DNA 36 134 0 188 271 42 0 chrX 94916848 94916896 -67683034 - MIR3 SINE MIR -51 157 108 2081 92 0 4 chrX 94917264 94917562 -67682368 - AluSg SINE Alu 0 320 24 4344 91 17 11 chrX 94917952 94918592 -67681338 - L1MA1 LINE L1 -2 6300 5657 1451 129 7 0 chrX 94918612 94918947 -67680983 - L1MA1 LINE L1 -743 5403 5103 327 256 0 0 chrX 94919002 94919080 -67680850 + L1MC4 LINE L1 6615 6692 -1350 310 227 0 52 chrX 94919081 94919137 -67680793 - L1MA1 LINE L1 -1047 5099 5049 183 42 0 0 chrX 94919137 94919161 -67680769 + (TTG)n Simple_repeat Simple_repeat 1 24 0 310 227 0 52 chrX 94919161 94919201 -67680729 - L1MA1 LINE L1 -1097 5049 5008 * 1055 92 0 11 chrX 94919198 94919372 -67680558 - L1M1 LINE L1 -4287 3278 3107 * 1297 226 24 66 chrX 94919369 94919746 -67680184 - L1M1 LINE L1 -7124 441 81 823 332 16 8 chrX 94920174 94920430 -67679500 + MLT1I LTR MaLR 152 409 0 14633 174 25 5 chrX 94920778 94926793 -67673137 + L1PB1 LINE L1 726 6861 -6 625 320 22 9 chrX 94926874 94927096 -67672834 - MIR SINE MIR -35 227 3 2370 93 0 6 chrX 94928074 94928386 -67671544 - AluSx SINE Alu 0 312 3 203 139 83 0 chrX 94928540 94928576 -67671354 + L2 LINE L2 3272 3310 -3 1528 144 32 129 chrX 94928603 94929005 -67670925 - MLT1A1 LTR MaLR 0 365 3 1261 148 0 0 chrX 94930217 94930406 -67669524 - MER5A DNA MER1_type 0 189 1 2292 180 50 5 chrX 94931712 94932156 -67667774 + MLT1C LTR MaLR 1 464 -3 1291 230 18 43 chrX 94932369 94932760 -67667170 - Charlie7 DNA MER1_type -144 2468 2088 705 286 72 102 chrX 94932768 94933623 -67666307 - L1MC4 LINE L1 -133 7909 7080 458 223 50 50 chrX 94933618 94933757 -67666173 + L1MC4 LINE L1 6841 6979 -1063 * 258 202 160 43 chrX 94933781 94933875 -67666055 - L1MC4a LINE L1 -1133 6675 6571 3217 139 57 5 chrX 94933888 94934465 -67665465 - L1MB2 LINE L1 -2 6169 5563 2969 129 0 10 chrX 94934873 94935353 -67664577 - L1MA5 LINE L1 -2 6298 5824 319 289 78 49 chrX 94935401 94935605 -67664325 - L1MC4a LINE L1 -1322 6486 6277 2225 83 7 0 chrX 94935693 94935982 -67663948 - AluSx SINE Alu -21 291 1 259 389 135 11 chrX 94936624 94937149 -67662781 - L2 LINE L2 -568 2746 2157 327 313 75 66 chrX 94937155 94937593 -67662337 - L2 LINE L2 -1 3312 2871 388 252 17 0 chrX 94937613 94937728 -67662202 + L1MEd LINE L1 11 127 -5992 437 267 20 0 chrX 94937740 94937890 -67662040 - LTR37B LTR ERV1 0 468 316 479 257 53 0 chrX 94937974 94938087 -67661843 + L2 LINE L2 3195 3313 0 1212 328 69 23 chrX 94938109 94938628 -67661302 + L1MEd LINE L1 216 758 -5361 464 240 13 39 chrX 94938703 94938857 -67661073 + L1MEd LINE L1 1094 1243 -4876 924 358 68 29 chrX 94938956 94939439 -67660491 - L2 LINE L2 -497 2817 2316 1518 151 69 105 chrX 94941050 94941499 -67658431 + L1MA9 LINE L1 5840 6276 -36 1165 177 123 58 chrX 94941513 94941790 -67658140 + AluJo SINE Alu 3 297 -5 231 299 79 95 chrX 94941874 94942115 -67657815 + L2 LINE L2 2942 3178 -94 893 159 87 31 chrX 94942201 94942396 -67657534 + MER3 DNA MER1_type 2 207 -2 416 306 74 0 chrX 94943711 94943819 -67656111 + L2 LINE L2 3138 3253 -19 216 306 185 23 chrX 94944949 94945122 -67654808 + L2 LINE L2 2190 2390 -924 208 293 211 16 chrX 94945189 94945312 -67654618 + L2 LINE L2 2692 2838 -476 859 210 40 33 chrX 94945314 94945590 -67654340 - MER92B LTR ERV1 0 636 359 1908 166 15 49 chrX 94945610 94946020 -67653910 - MER61B LTR ERV1 -29 396 1 25587 104 29 39 chrX 94946024 94946052 -67653878 - MER61B-int LTR ERV1 -4 5213 5186 2381 103 3 0 chrX 94946052 94946364 -67653566 + AluSp SINE Alu 1 313 0 25587 104 29 39 chrX 94946364 94951123 -67648807 - MER61B-int LTR ERV1 -31 5186 181 2191 135 12 39 chrX 94951285 94951692 -67648238 - MER61B LTR ERV1 -29 396 1 1386 185 86 10 chrX 94951698 94952012 -67647918 - MER92B LTR ERV1 -298 338 1 1395 227 12 9 chrX 94952231 94952412 -67647518 + MER92B LTR ERV1 1 185 -451 2586 161 28 85 chrX 94952412 94952447 -67647483 - MLT2B2 LTR ERVL -4 511 476 300 91 0 0 chrX 94952447 94952491 -67647439 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 2586 161 28 85 chrX 94952491 94952997 -67646933 - MLT2B2 LTR ERVL -39 476 1 1395 227 12 9 chrX 94952997 94953136 -67646794 + MER92B LTR ERV1 185 322 -314 3196 143 114 19 chrX 94953163 94953811 -67646119 + MER50 LTR ERV1 2 711 -23 398 141 30 50 chrX 94953877 94953976 -67645954 - MER92B LTR ERV1 -229 407 311 2030 218 13 52 chrX 94954004 94954563 -67645367 - MER67B LTR ERV1 -136 525 1 342 181 42 0 chrX 94954568 94954640 -67645290 - MER31B LTR ERV1 -391 75 1 696 157 44 105 chrX 94954666 94954895 -67645035 + MER92B LTR ERV1 422 636 0 397 348 188 0 chrX 94954912 94955050 -67644880 + L2 LINE L2 3104 3267 -5 250 248 30 40 chrX 94955301 94955402 -67644528 - MER34 LTR ERV1 0 542 443 1772 130 167 23 chrX 94955404 94955757 -67644173 - MER4A LTR ERV1 0 664 261 628 80 10 30 chrX 94955757 94955857 -67644073 - MER4A LTR ERV1 -566 98 1 907 250 45 88 chrX 94955877 94956321 -67643609 - MER34 LTR ERV1 -117 425 1 1599 214 31 79 chrX 94957810 94958393 -67641537 - MER34B LTR ERV1 0 565 11 1331 296 114 11 chrX 94958764 94959324 -67640606 + L2 LINE L2 1537 2154 -1160 1033 297 36 27 chrX 94959348 94959678 -67640252 + LTR16C LTR ERVL 91 423 -68 850 305 58 17 chrX 94959711 94960072 -67639858 - LTR16A LTR ERVL -23 427 52 180 0 0 0 chrX 94961865 94961885 -67638045 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 6437 184 44 15 chrX 94961934 94964200 -67635730 - L1PA15 LINE L1 0 6165 3865 323 178 41 0 chrX 94964287 94964456 -67635474 + (TA)n Simple_repeat Simple_repeat 2 177 0 296 183 24 32 chrX 94964475 94964601 -67635329 + (TA)n Simple_repeat Simple_repeat 2 126 0 28 79 0 0 chrX 94964607 94964670 -67635260 + AT_rich Low_complexity Low_complexity 1 63 0 14925 92 5 0 chrX 94964673 94967597 -67632333 + L1PA7 LINE L1 3213 6135 -19 297 68 0 0 chrX 94967597 94967641 -67632289 + (TA)n Simple_repeat Simple_repeat 1 44 0 212 192 51 64 chrX 94967664 94967742 -67632188 + L3 LINE CR1 1187 1263 -314 197 189 27 9 chrX 94968074 94968185 -67631745 + (TA)n Simple_repeat Simple_repeat 1 113 0 248 257 143 0 chrX 94968206 94968276 -67631654 + MER21B LTR ERV1 17 96 -767 1896 259 122 20 chrX 94968315 94968956 -67630974 + MER21B LTR ERV1 98 803 -60 1331 200 38 61 chrX 94969172 94969299 -67630631 + MLT1B LTR MaLR 5 133 -257 1692 164 161 11 chrX 94969299 94969671 -67630259 + MSTA LTR MaLR 1 428 0 1331 200 38 61 chrX 94969671 94969938 -67629992 + MLT1B LTR MaLR 133 390 0 1166 214 55 58 chrX 94969972 94970369 -67629561 - MSTD LTR MaLR 0 396 1 797 183 11 50 chrX 94970689 94970869 -67629061 + MLT1E2 LTR MaLR 19 191 -435 1138 58 0 0 chrX 94970869 94971008 -67628922 + AluYa5/8 SINE Alu 171 309 -1 1714 233 35 0 chrX 94971018 94971413 -67628517 + MLT1E2 LTR MaLR 218 626 0 1028 371 36 16 chrX 94971417 94972145 -67627785 - ERVL LTR ERVL -880 4884 4143 1035 371 9 5 chrX 94972211 94972849 -67627081 - ERVL LTR ERVL -1719 4045 3405 1493 275 18 57 chrX 94972926 94972966 -67626964 + L2 LINE L2 2665 2705 -608 1501 180 79 53 chrX 94972966 94973024 -67626906 + MLT1A1 LTR MaLR 1 56 -309 1992 43 0 9 chrX 94973024 94973257 -67626673 + AluY SINE Alu 74 304 -7 1501 180 79 53 chrX 94973257 94973554 -67626376 + MLT1A1 LTR MaLR 56 365 0 1493 275 18 57 chrX 94973554 94973709 -67626221 + L2 LINE L2 2705 2864 -449 1930 133 0 0 chrX 94973709 94973973 -67625957 + AluSx SINE Alu 1 264 -48 345 47 0 0 chrX 94973983 94974026 -67625904 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1493 275 18 57 chrX 94974026 94974491 -67625439 + L2 LINE L2 2873 3313 0 1249 282 96 12 chrX 94974521 94975111 -67624819 + L2 LINE L2 2677 3313 0 1859 188 43 6 chrX 94975172 94975524 -67624406 - MLT1A1 LTR MaLR 0 365 1 405 269 10 81 chrX 94975588 94975785 -67624145 + LTR67 LTR ERVL 375 557 0 2436 334 54 9 chrX 94976024 94977186 -67622744 + HERVL LTR ERVL 3090 4303 -1351 1940 112 30 0 chrX 94977232 94977499 -67622431 - AluSx SINE Alu -3 309 35 437 0 19 0 chrX 94977504 94977557 -67622373 + (TTA)n Simple_repeat Simple_repeat 2 55 0 957 341 20 39 chrX 94977601 94978193 -67621737 + HERVL LTR ERVL 4469 5049 -715 1100 207 173 54 chrX 94978302 94978825 -67621105 + MER39 LTR ERV1 12 680 -27 636 261 17 0 chrX 94978851 94979031 -67620899 + HERVL LTR ERVL 5198 5380 -384 22 70 0 0 chrX 94979384 94979427 -67620503 + AT_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chrX 94980081 94980121 -67619809 + AT_rich Low_complexity Low_complexity 1 40 0 281 280 11 32 chrX 94981971 94982064 -67617866 - MER5A DNA MER1_type -3 186 96 446 141 0 0 chrX 94983324 94983402 -67616528 + MADE1 DNA Mariner 1 78 -2 702 19 94 10 chrX 94984397 94984600 -67615330 + (TA)n Simple_repeat Simple_repeat 1 220 0 321 289 0 0 chrX 94984794 94984884 -67615046 + MER81 DNA DNA 1 90 -24 21 0 0 0 chrX 94985355 94985376 -67614554 + AT_rich Low_complexity Low_complexity 1 21 0 303 301 0 0 chrX 94985517 94985590 -67614340 + L2 LINE L2 3241 3313 0 185 275 0 0 chrX 94985630 94985670 -67614260 - L2 LINE L2 -10 3262 3223 14068 50 10 0 chrX 94985775 94987601 -67612329 + L1P LINE L1 1 1844 -4302 6132 21 6 5 chrX 94987600 94988614 -67611316 + L1PA3 LINE L1 4999 6013 -142 * 1165 42 0 0 chrX 94988734 94988876 -67611054 + L1PA3 LINE L1 6011 6152 -3 364 278 106 45 chrX 94988932 94989177 -67610753 - L1ME4a LINE L1 -95 6026 5767 1894 171 0 7 chrX 94989352 94989661 -67610269 - AluJo SINE Alu -2 310 4 183 367 111 33 chrX 94989815 94989995 -67609935 - L3 LINE CR1 -1192 385 192 1214 183 95 12 chrX 94990245 94990486 -67609444 - MSTA LTR MaLR 0 428 168 208 293 106 72 chrX 94992652 94992860 -67607070 - L2 LINE L2 -419 2895 2681 462 125 10 67 chrX 94993152 94993256 -67606674 - AluSc SINE Alu 0 309 212 270 154 39 0 chrX 94994008 94994060 -67605870 + MSTA LTR MaLR 1 54 -374 2009 118 3 14 chrX 94994213 94994509 -67605421 + AluSx SINE Alu 1 293 -19 1035 276 114 5 chrX 94994680 94995104 -67604826 - L1ME4a LINE L1 -362 5802 5339 1578 236 52 24 chrX 94995125 94995621 -67604309 - Charlie7 DNA MER1_type -672 1940 1431 603 345 41 30 chrX 94996057 94996396 -67603534 + MLT1K LTR MaLR 146 488 -100 1487 127 45 0 chrX 94996422 94996689 -67603241 - L1MA7 LINE L1 -2 6289 6011 3750 146 27 9 chrX 94996691 94997383 -67602547 - L1MA7 LINE L1 -366 5925 5222 1392 194 59 0 chrX 94997386 94997659 -67602271 + L1 LINE L1 4868 5156 -990 235 254 70 0 chrX 94997665 94997736 -67602194 + MLT1K LTR MaLR 494 569 -19 345 229 115 0 chrX 94997961 94998057 -67601873 + MLT1J2 LTR MaLR 344 450 0 4272 196 41 29 chrX 94998296 94998819 -67601111 - L1MB8 LINE L1 -5 6173 5658 888 133 0 15 chrX 94998819 94998954 -67600976 - FLAM_C SINE Alu 0 133 1 4272 196 41 29 chrX 94998954 95000385 -67599545 - L1MB8 LINE L1 -520 5658 4196 211 260 302 31 chrX 95001180 95001276 -67598654 + MIR SINE MIR 49 170 -92 759 324 49 54 chrX 95001704 95002152 -67597778 + MLT1K LTR MaLR 143 588 0 1287 220 26 0 chrX 95002942 95003215 -67596715 + MER58 DNA MER1_type 2 281 -60 489 311 182 0 chrX 95003291 95003500 -67596430 + MIR SINE MIR 14 260 -2 2147 62 33 4 chrX 95003692 95004009 -67595921 - AluY SINE Alu 0 325 1 25 0 0 0 chrX 95006398 95006423 -67593507 + AT_rich Low_complexity Low_complexity 1 25 0 6179 88 17 2 chrX 95006431 95007364 -67592566 + L1PA13 LINE L1 5203 6148 -15 189 256 116 0 chrX 95007813 95007899 -67592031 + MIR SINE MIR 117 212 -50 1904 147 109 3 chrX 95008058 95008378 -67591552 - MLT1A1 LTR MaLR -11 354 1 2350 98 3 0 chrX 95008832 95009139 -67590791 - AluSq SINE Alu -5 308 1 675 351 12 4 chrX 95010350 95010592 -67589338 + MIR SINE MIR 19 262 0 887 339 42 31 chrX 95010749 95011174 -67588756 - LTR16B LTR ERVL 0 464 35 1475 253 52 38 chrX 95011432 95012111 -67587819 - L1MB8 LINE L1 -2902 3244 2557 1226 194 43 18 chrX 95012115 95012394 -67587536 - MLT1A1 LTR MaLR 0 365 80 294 323 15 23 chrX 95012394 95012524 -67587406 + MIR SINE MIR 134 262 0 417 200 0 0 chrX 95012568 95012638 -67587292 - MLT1A1 LTR MaLR -304 70 1 1410 220 12 3 chrX 95012803 95013148 -67586782 - L1MB8 LINE L1 -3642 2504 2157 2027 156 0 7 chrX 95013161 95013468 -67586462 + MER1B DNA MER1_type 35 339 0 5688 255 49 36 chrX 95013468 95014141 -67585789 - L1MEc LINE L1 -4121 2275 1612 562 254 23 0 chrX 95014141 95014271 -67585659 + FLAM_A SINE Alu 1 133 0 5688 255 49 36 chrX 95014271 95015343 -67584587 - L1MEc LINE L1 -4784 1612 494 441 54 0 0 chrX 95015343 95015399 -67584531 + (TA)n Simple_repeat Simple_repeat 2 57 0 5688 255 49 36 chrX 95015399 95015850 -67584080 - L1MEc LINE L1 -5902 494 50 435 235 20 0 chrX 95017931 95018029 -67581901 + MER5A DNA MER1_type 10 109 -80 225 235 265 10 chrX 95017950 95018052 -67581878 - MER5A DNA MER1_type -16 173 46 * 2088 134 7 0 chrX 95018169 95018476 -67581454 + AluSx SINE Alu 1 309 -3 1826 150 6 20 chrX 95018615 95018968 -67580962 - L1MA5 LINE L1 0 6300 5953 258 262 0 16 chrX 95019052 95019113 -67580817 + L2 LINE L2 3254 3313 0 949 279 16 12 chrX 95019405 95019652 -67580278 + MIR SINE MIR 7 254 -8 429 297 57 23 chrX 95021813 95021988 -67577942 + MIR3 SINE MIR 21 201 -7 1589 149 217 11 chrX 95023550 95023717 -67576213 + MSTA LTR MaLR 1 132 -296 468 0 0 0 chrX 95023717 95023769 -67576161 + (TC)n Simple_repeat Simple_repeat 1 52 0 1589 149 217 11 chrX 95023769 95023956 -67575974 + MSTA LTR MaLR 132 428 0 6240 279 66 31 chrX 95024260 95025555 -67574375 - L2 LINE L2 0 3313 2064 752 181 0 158 chrX 95025555 95025814 -67574116 - MER20 DNA MER1_type -1 218 1 6240 279 66 31 chrX 95025814 95026611 -67573319 - L2 LINE L2 -1249 2064 1117 1750 162 61 29 chrX 95026611 95026988 -67572942 - MLT1B LTR MaLR -1 389 1 6240 279 66 31 chrX 95026988 95027323 -67572607 - L2 LINE L2 -2196 1117 795 696 291 27 19 chrX 95027324 95027733 -67572197 + LTR16A LTR ERVL 1 450 0 532 303 56 0 chrX 95027734 95027912 -67572018 + HERV16 LTR ERVL 2 189 -4807 353 125 12 62 chrX 95028283 95028363 -67571567 + L1MB8 LINE L1 5837 5912 -272 595 194 34 40 chrX 95028382 95028557 -67571373 + L1MB8 LINE L1 5999 6172 -6 3125 280 27 39 chrX 95028559 95029565 -67570365 + HERV16 LTR ERVL 587 1580 -3416 290 173 160 27 chrX 95029589 95029664 -67570266 - LTR16A1 LTR ERVL 0 457 373 538 240 23 31 chrX 95029717 95029846 -67570084 - LTR16A1 LTR ERVL -74 383 256 407 336 0 0 chrX 95029860 95029982 -67569948 - MER63A DNA MER1_type -25 185 64 299 157 0 176 chrX 95029982 95030090 -67569840 + MER21B LTR ERV1 1 89 -774 3958 217 32 5 chrX 95030093 95030871 -67569059 + MER21B LTR ERV1 43 841 -22 587 221 124 60 chrX 95030928 95031177 -67568753 - LTR16A1 LTR ERVL -192 265 1 187 220 160 0 chrX 95033304 95033354 -67566576 + L2 LINE L2 3171 3228 -44 * 425 296 102 29 chrX 95033342 95033548 -67566382 + MIR SINE MIR 23 243 -19 32 86 0 0 chrX 95033774 95033855 -67566075 + AT_rich Low_complexity Low_complexity 1 81 0 230 250 0 0 chrX 95033960 95034004 -67565926 + (CATA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chrX 95034112 95034135 -67565795 + AT_rich Low_complexity Low_complexity 1 23 0 1301 199 107 15 chrX 95034145 95034417 -67565513 + AluJo SINE Alu 1 297 -15 314 181 0 14 chrX 95034427 95034499 -67565431 + (TATG)n Simple_repeat Simple_repeat 2 72 0 300 346 8 8 chrX 95034561 95034691 -67565239 - L1ME LINE L1 -298 5823 5694 280 303 46 44 chrX 95034728 95035014 -67564916 + L2 LINE L2 1400 1736 -1578 1296 215 133 14 chrX 95035025 95035379 -67564551 + MSTD LTR MaLR 1 396 0 520 325 51 93 chrX 95035432 95036315 -67563615 + L2 LINE L2 2435 3272 0 1718 343 53 43 chrX 95036321 95037737 -67562193 + L2 LINE L2 1841 3271 -1 193 345 58 0 chrX 95037923 95038010 -67561920 + MIR3 SINE MIR 81 172 -36 195 162 0 0 chrX 95038998 95039035 -67560895 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 991 263 125 28 chrX 95039039 95039472 -67560458 - L2 LINE L2 -1 3312 2838 2126 84 3 14 chrX 95041423 95041751 -67558179 + AluSq SINE Alu 1 325 0 638 373 161 7 chrX 95041777 95042391 -67557539 + L2 LINE L2 2269 2977 -337 2081 144 0 25 chrX 95043405 95043725 -67556205 + AluSx SINE Alu 1 312 0 2329 91 0 3 chrX 95044043 95044341 -67555589 - AluSx SINE Alu -15 297 1 243 61 0 0 chrX 95044539 95044572 -67555358 + (TA)n Simple_repeat Simple_repeat 2 34 0 365 291 45 82 chrX 95044572 95044816 -67555114 + L1MEd LINE L1 935 1169 -4950 2117 124 7 3 chrX 95044878 95045176 -67554754 + AluSx SINE Alu 1 299 -13 775 158 113 45 chrX 95045277 95045499 -67554431 - L1MDa LINE L1 -3563 2977 2741 355 299 0 0 chrX 95045504 95045591 -67554339 + Tigger3b DNA MER2_type 16 102 -1129 * 5771 108 38 12 chrX 95045589 95046523 -67553407 + Tigger3b DNA MER2_type 274 1231 0 2201 235 42 14 chrX 95046526 95047185 -67552745 - L1MDa LINE L1 -4322 2218 1541 1962 66 52 36 chrX 95047191 95047496 -67552434 - MER11A LTR ERVK 0 1266 957 1648 46 40 25 chrX 95047493 95047767 -67552163 - MER11A LTR ERVK -892 374 1 * 1527 232 55 17 chrX 95047768 95048032 -67551898 - L1MDa LINE L1 -5001 1542 1289 2286 82 48 0 chrX 95048032 95048325 -67551605 - AluSc SINE Alu 0 309 3 1527 232 55 17 chrX 95048325 95048590 -67551340 - L1MDa LINE L1 -5254 1289 993 301 343 35 47 chrX 95048665 95048834 -67551096 - L1MDa LINE L1 -5814 726 560 824 278 57 47 chrX 95049503 95049992 -67549938 - L1MDa LINE L1 -6013 527 34 308 276 43 0 chrX 95050307 95050423 -67549507 + L1ME4a LINE L1 5991 6111 -10 1483 131 9 9 chrX 95050728 95050957 -67548973 + AluSq SINE Alu 85 313 0 235 259 37 0 chrX 95051668 95051722 -67548208 + MIR SINE MIR 195 250 -12 218 29 59 0 chrX 95051787 95051821 -67548109 - L2 LINE L2 -8 3305 3270 332 299 51 57 chrX 95051936 95052113 -67547817 + MIR SINE MIR 1 176 -86 185 318 16 0 chrX 95054200 95054263 -67545667 + MIR SINE MIR 85 148 -114 186 209 0 0 chrX 95054374 95054417 -67545513 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chrX 95055140 95055161 -67544769 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chrX 95055328 95055359 -67544571 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chrX 95057145 95057175 -67542755 + AT_rich Low_complexity Low_complexity 1 30 0 890 217 0 30 chrX 95057654 95057798 -67542132 + MER58A DNA MER1_type 1 141 -200 2054 181 3 3 chrX 95057798 95058162 -67541768 - MER47A DNA MER2_type -1 365 2 890 217 0 30 chrX 95058162 95058183 -67541747 + MER58A DNA MER1_type 141 161 -63 2211 116 0 0 chrX 95058198 95058500 -67541430 + AluSg SINE Alu 1 302 -8 462 273 61 49 chrX 95058570 95058999 -67540931 + L1M4 LINE L1 2392 2825 -3321 210 347 60 73 chrX 95060079 95060229 -67539701 + L2 LINE L2 3125 3272 0 1554 155 35 21 chrX 95061545 95061589 -67538341 + MER49 LTR ERV1 1 43 -880 4960 82 3 8 chrX 95061589 95062259 -67537671 - PABL_B LTR ERV1 0 667 1 1554 155 35 21 chrX 95062259 95062504 -67537426 + MER49 LTR ERV1 43 294 -629 3585 157 22 34 chrX 95062557 95063231 -67536699 + MER4D LTR ERV1 238 903 0 3410 60 0 9 chrX 95063327 95063779 -67536151 - LTR7 LTR ERV1 -2 448 1 2557 74 45 13 chrX 95063779 95064159 -67535771 - HERVH LTR ERV1 0 7713 7322 1379 114 18 14 chrX 95064157 95064376 -67535554 - HERVH LTR ERV1 -1894 5819 5600 * 4405 136 1 1 chrX 95064377 95065039 -67534891 - HERVH LTR ERV1 -2564 5149 4488 3399 111 0 6 chrX 95065041 95065546 -67534384 - HERVH LTR ERV1 -3720 3993 3492 1023 107 7 0 chrX 95065536 95065686 -67534244 - HERVH LTR ERV1 -4423 3290 3140 * 20164 96 10 23 chrX 95065665 95068700 -67531230 - HERVH LTR ERV1 -4718 2995 1 3425 60 0 7 chrX 95068702 95069153 -67530777 - LTR7 LTR ERV1 -2 448 1 189 0 0 0 chrX 95070029 95070050 -67529880 + (T)n Simple_repeat Simple_repeat 1 21 0 707 174 109 38 chrX 95070172 95070356 -67529574 - MER21B LTR ERV1 -22 841 645 14062 190 55 24 chrX 95070367 95072400 -67527530 + L1MA1 LINE L1 16 1985 -5736 2303 97 0 7 chrX 95072400 95072699 -67527231 - AluSg SINE Alu -13 297 1 14062 190 55 24 chrX 95072699 95073123 -67526807 + L1MA1 LINE L1 1985 2394 -5327 234 0 0 0 chrX 95073123 95073149 -67526781 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 336 48 0 0 chrX 95073148 95073190 -67526740 + (GA)n Simple_repeat Simple_repeat 2 43 0 14062 190 55 24 chrX 95073149 95073315 -67526615 + L1MA1 LINE L1 2394 2553 -5168 288 0 0 0 chrX 95073315 95073347 -67526583 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 318 50 0 0 chrX 95073346 95073386 -67526544 + (GA)n Simple_repeat Simple_repeat 2 41 0 14062 190 55 24 chrX 95073347 95073605 -67526325 + L1MA1 LINE L1 2553 2802 -4919 2488 67 0 3 chrX 95073605 95073917 -67526013 + AluY SINE Alu 1 311 0 14062 190 55 24 chrX 95073917 95076488 -67523442 + L1MA1 LINE L1 2802 5692 -2029 3363 83 11 0 chrX 95076488 95076936 -67522994 + MLT2A2 LTR ERVL 1 453 0 14062 190 55 24 chrX 95076936 95079031 -67520899 + L1MA1 LINE L1 5692 7721 0 814 171 88 60 chrX 95079047 95079070 -67520860 - MER21B LTR ERV1 -225 638 617 2191 127 7 0 chrX 95079070 95079378 -67520552 + AluSq SINE Alu 1 310 -3 814 171 88 60 chrX 95079378 95079570 -67520360 - MER21B LTR ERV1 -246 617 417 3175 143 8 53 chrX 95079599 95080200 -67519730 - MER4B LTR ERV1 -36 574 1 1875 235 16 30 chrX 95080200 95080626 -67519304 - MER21B LTR ERV1 -443 420 1 472 354 0 0 chrX 95081947 95082105 -67517825 + MIR SINE MIR 49 206 -56 283 339 44 48 chrX 95082124 95082375 -67517555 - MLT1K LTR MaLR -10 578 329 220 239 28 84 chrX 95082587 95082658 -67517272 - MER5B DNA MER1_type 0 178 112 28 48 0 0 chrX 95082872 95082914 -67517016 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chrX 95083076 95083104 -67516826 + AT_rich Low_complexity Low_complexity 1 28 0 1077 298 120 29 chrX 95083112 95083588 -67516342 - L2 LINE L2 -3 3310 2793 565 191 22 15 chrX 95083598 95083734 -67516196 - Cheshire DNA MER1_type -11 2409 2273 2132 119 0 0 chrX 95083779 95084065 -67515865 - AluSx SINE Alu -22 290 5 1065 97 0 0 chrX 95084089 95084223 -67515707 + AluSp/q SINE Alu 160 293 -20 5581 220 103 26 chrX 95084232 95085577 -67514353 - Cheshire DNA MER1_type -794 1626 152 1950 135 7 3 chrX 95085577 95085873 -67514057 - AluJb SINE Alu -15 297 1 5581 220 103 26 chrX 95085873 95086038 -67513892 - Cheshire DNA MER1_type -2268 152 1 458 240 25 180 chrX 95086038 95086355 -67513575 - L2 LINE L2 -514 2800 2533 21 0 0 0 chrX 95087039 95087060 -67512870 + AT_rich Low_complexity Low_complexity 1 21 0 520 219 65 7 chrX 95087062 95087085 -67512845 - L1MA10 LINE L1 -2 6332 6310 1440 209 119 59 chrX 95087085 95087607 -67512323 - L1ME2 LINE L1 -31 6133 5581 320 244 23 47 chrX 95087614 95087700 -67512230 + MLT1C LTR MaLR 1 84 -421 545 294 89 85 chrX 95087709 95088261 -67511669 + MER34B LTR ERV1 12 565 0 957 257 64 44 chrX 95088261 95088604 -67511326 + MLT1C LTR MaLR 118 467 0 302 203 0 0 chrX 95088607 95088666 -67511264 - L1ME2 LINE L1 -592 5574 5516 * 5713 169 1 11 chrX 95088662 95089697 -67510233 - L1P LINE L1 -1105 5041 4017 1918 197 34 25 chrX 95089702 95090246 -67509684 - MLT2A2 LTR ERVL -4 550 1 1681 148 40 3 chrX 95090246 95090543 -67509387 + MSTB1 LTR MaLR 125 432 0 321 281 16 70 chrX 95090674 95090802 -67509128 + MIR3 SINE MIR 82 202 -6 21 0 0 0 chrX 95091094 95091115 -67508815 + AT_rich Low_complexity Low_complexity 1 21 0 222 355 0 35 chrX 95091205 95091331 -67508599 - MIR SINE MIR -72 136 16 683 156 14 35 chrX 95091457 95091598 -67508332 + Cheshire DNA MER1_type 2084 2221 -199 1476 225 87 6 chrX 95091901 95092247 -67507683 + Cheshire DNA MER1_type 3 376 -2044 * 1670 157 77 26 chrX 95092244 95092595 -67507335 + Cheshire DNA MER1_type 2052 2420 0 27 29 0 0 chrX 95092995 95093029 -67506901 + AT_rich Low_complexity Low_complexity 1 34 0 2080 118 7 10 chrX 95093242 95093547 -67506383 - AluSx SINE Alu -8 304 1 283 408 34 0 chrX 95093770 95093917 -67506013 - L2 LINE L2 -218 3054 2903 224 224 0 35 chrX 95094324 95094382 -67505548 - MIR SINE MIR -63 145 90 318 243 43 0 chrX 95095316 95095386 -67504544 + L2 LINE L2 3225 3297 -16 2257 118 87 6 chrX 95095487 95095834 -67504096 - THE1C LTR MaLR 0 375 1 4114 220 33 1 chrX 95095843 95096758 -67503172 + Charlie1a DNA MER1_type 43 986 -469 2051 122 33 3 chrX 95096795 95097132 -67502798 + L1PB3 LINE L1 5808 6154 0 216 333 40 16 chrX 95097132 95097258 -67502672 - L2 LINE L2 -313 2959 2831 393 339 37 41 chrX 95097376 95097594 -67502336 - L2 LINE L2 -674 2640 2424 466 281 36 48 chrX 95097627 95097792 -67502138 - L1MEc LINE L1 -2641 3574 3411 1504 195 18 0 chrX 95097792 95098074 -67501856 - AluJo SINE Alu -25 287 1 466 281 36 48 chrX 95098074 95098157 -67501773 - L1MEc LINE L1 -2804 3411 3329 284 247 0 35 chrX 95098151 95098236 -67501694 - L1MEc LINE L1 -5117 1279 1198 * 204 135 0 0 chrX 95098245 95098282 -67501648 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 969 245 57 8 chrX 95098285 95098530 -67501400 - MIR SINE MIR 0 262 6 215 266 133 18 chrX 95098712 95098825 -67501105 + L2 LINE L2 1943 2068 -1246 * 347 263 113 32 chrX 95098821 95099007 -67500923 - L2 LINE L2 0 3313 3113 21 36 0 0 chrX 95099275 95099303 -67500627 + AT_rich Low_complexity Low_complexity 1 28 0 37701 47 2 1 chrX 95099303 95104819 -67495111 - L1PA4 LINE L1 -11 6144 623 716 112 0 0 chrX 95104817 95104915 -67495015 - L1PA4 LINE L1 -6048 98 1 * 418 208 84 104 chrX 95104920 95105074 -67494856 - L1P3 LINE L1 -350 5771 5630 204 135 0 0 chrX 95105518 95105555 -67494375 + (TG)n Simple_repeat Simple_repeat 1 37 0 485 283 90 62 chrX 95105991 95106538 -67493392 - L1ME LINE L1 -526 5595 5065 1199 141 12 35 chrX 95106538 95106667 -67493263 - L1MA8 LINE L1 0 6291 6169 1691 188 7 0 chrX 95106667 95106959 -67492971 - AluJb SINE Alu -18 294 1 1199 141 12 35 chrX 95106959 95107084 -67492846 - L1MA8 LINE L1 -122 6169 6043 485 283 90 62 chrX 95107084 95108055 -67491875 - L1ME LINE L1 -1056 5065 4027 336 306 137 20 chrX 95108190 95108438 -67491492 - L1ME LINE L1 -2214 3932 3656 184 310 14 0 chrX 95108485 95108556 -67491374 + MIR SINE MIR 63 134 -128 378 285 84 75 chrX 95108862 95109328 -67490602 - L1ME LINE L1 -2954 3192 2723 246 271 57 21 chrX 95110345 95110537 -67489393 + L1ME3A LINE L1 1315 1513 -4883 1181 268 74 54 chrX 95110538 95111332 -67488598 + L1ME3A LINE L1 4525 5334 -881 1757 271 67 23 chrX 95111366 95112071 -67487859 + L1ME3A LINE L1 5385 6120 -119 22 35 0 0 chrX 95112340 95112369 -67487561 + AT_rich Low_complexity Low_complexity 1 29 0 1256 183 110 14 chrX 95112639 95112929 -67487001 + LTR49 LTR ERV1 1 318 -277 765 81 32 0 chrX 95112930 95113053 -67486877 - AluY SINE Alu 0 311 185 897 240 9 18 chrX 95113072 95113293 -67486637 + LTR29 LTR ERV1 404 622 0 554 245 80 0 chrX 95113379 95113542 -67486388 + MIR SINE MIR 3 178 -84 333 250 12 71 chrX 95113658 95113826 -67486104 - TAR1 Satellite telomeric -1926 185 28 * 2495 184 10 68 chrX 95113679 95114016 -67485914 - LTR60 LTR ERV1 -31 555 265 1276 13 0 0 chrX 95114016 95114165 -67485765 - L1PA4 LINE L1 0 6155 6007 2495 184 10 68 chrX 95114165 95114414 -67485516 - LTR60 LTR ERV1 -321 265 3 298 212 59 59 chrX 95114416 95114501 -67485429 - LTR60-int LTR ERV1 -9 7196 7112 894 160 7 0 chrX 95115269 95115413 -67484517 - MER52-int LTR ERV1 -3681 3856 3712 301 287 55 39 chrX 95115486 95115667 -67484263 - MER52-int LTR ERV1 -1720 6906 6723 2450 243 41 22 chrX 95115848 95117010 -67482920 - MER52-int LTR ERV1 -843 4037 2257 414 246 8 0 chrX 95117018 95117140 -67482790 - MER52-int LTR ERV1 -5035 1961 1734 198 0 0 0 chrX 95118329 95118351 -67481579 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5821 169 10 5 chrX 95118351 95120402 -67479528 - L1PB1 LINE L1 -5 6146 4090 888 220 42 37 chrX 95120430 95120671 -67479259 - MER52-int LTR ERV1 -3476 1322 1081 491 248 68 82 chrX 95120862 95121156 -67478774 - TAR1 Satellite telomeric -1820 291 2 * 2310 189 41 60 chrX 95120977 95121308 -67478622 - LTR60 LTR ERV1 -31 555 238 2333 96 0 3 chrX 95121308 95121611 -67478319 - AluSc SINE Alu -7 302 1 2310 189 41 60 chrX 95121611 95121845 -67478085 - LTR60 LTR ERV1 -348 238 1 263 273 15 0 chrX 95121894 95121960 -67477970 + MIR SINE MIR 196 262 0 447 388 42 48 chrX 95122097 95122432 -67477498 - L2 LINE L2 -8 3264 2932 1266 192 4 2 chrX 95122433 95122739 -67477191 + MLT1A1 LTR MaLR 1 365 0 319 319 22 60 chrX 95122768 95122953 -67476977 + HAL1b LINE L1 552 729 -619 2040 216 81 34 chrX 95123039 95123567 -67476363 - MLT2B3 LTR ERVL -1 553 1 250 239 154 8 chrX 95123824 95123941 -67475989 - MER103 DNA DNA -21 145 12 2198 103 0 0 chrX 95124441 95124731 -67475199 + AluSx SINE Alu 1 290 -22 198 413 22 0 chrX 95124866 95124958 -67474972 + MIR3 SINE MIR 8 101 -107 4410 230 41 15 chrX 95125403 95127114 -67472816 - L1MEc LINE L1 -2340 3875 2042 20443 91 16 19 chrX 95127114 95130147 -67469783 - MER57A-int LTR ERV1 -1735 5802 2777 3870 130 42 29 chrX 95130179 95130999 -67468931 - MER57A-int LTR ERV1 -3929 2017 1083 * 4199 143 8 11 chrX 95130989 95131658 -67468272 - MER57A-int LTR ERV1 -6262 1275 609 2462 174 7 2 chrX 95131767 95132180 -67467750 - MER57A-int LTR ERV1 -7120 417 3 2126 153 47 3 chrX 95132182 95132568 -67467362 - MER57A LTR ERV1 0 403 1 3366 240 30 47 chrX 95132600 95133030 -67466900 + L1MCb LINE L1 77 513 -5578 7898 26 0 0 chrX 95133030 95134731 -67465199 - L1PA3 LINE L1 -5 6150 4450 3366 240 30 47 chrX 95134731 95135019 -67464911 + L1MCb LINE L1 513 804 -5287 2544 99 8 0 chrX 95135019 95135371 -67464559 - THE1A LTR MaLR 0 355 1 10848 103 24 4 chrX 95135371 95136920 -67463010 - THE1A-int LTR MaLR 0 1580 1 2400 109 17 3 chrX 95136921 95137270 -67462660 - THE1A LTR MaLR -1 354 1 3366 240 30 47 chrX 95137270 95137730 -67462200 + L1MCb LINE L1 802 1239 -4852 248 33 0 0 chrX 95137730 95137760 -67462170 - MSTB LTR MaLR -396 30 1 4609 180 63 8 chrX 95137775 95137816 -67462114 + L1MA4 LINE L1 5254 5291 -1009 180 0 0 0 chrX 95137816 95137836 -67462094 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4609 180 63 8 chrX 95137836 95138786 -67461144 + L1MA4 LINE L1 5291 6300 0 2602 183 28 0 chrX 95138794 95139298 -67460632 + L1MC3 LINE L1 7268 7785 0 24 32 0 0 chrX 95139765 95139796 -67460134 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 95140204 95140226 -67459704 + AT_rich Low_complexity Low_complexity 1 22 0 361 143 0 16 chrX 95140255 95140318 -67459612 + MSTD LTR MaLR 1 62 -334 1215 288 16 22 chrX 95140422 95140790 -67459140 + MSTD LTR MaLR 31 396 0 22 0 0 0 chrX 95140797 95140819 -67459111 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 95140847 95140878 -67459052 + AT_rich Low_complexity Low_complexity 1 31 0 3194 146 6 8 chrX 95140878 95141591 -67458339 - L1PB4 LINE L1 -12 6144 5617 487 283 17 29 chrX 95141194 95141239 -67458691 - L1MC3 LINE L1 -1960 5825 5781 1042 97 0 27 chrX 95141239 95141424 -67458506 + (TA)n Simple_repeat Simple_repeat 1 180 0 487 283 17 29 chrX 95141424 95141618 -67458312 - L1MC3 LINE L1 -2004 5781 5589 311 259 245 7 chrX 95141598 95141745 -67458185 + MIR SINE MIR 79 260 -2 * 210 91 0 0 chrX 95142004 95142037 -67457893 + (TC)n Simple_repeat Simple_repeat 1 33 0 280 286 0 22 chrX 95142105 95142196 -67457734 + MLT1K LTR MaLR 492 580 -8 220 302 198 0 chrX 95144878 95144994 -67454936 + L2 LINE L2 3175 3313 0 201 375 77 0 chrX 95145170 95145274 -67454656 - L2 LINE L2 -5 3267 3156 575 313 83 23 chrX 95148667 95148967 -67450963 - L3 LINE CR1 -151 1426 1109 295 257 0 14 chrX 95148985 95149059 -67450871 - Tigger5 DNA MER2_type 0 2323 2251 449 215 0 0 chrX 95149081 95149160 -67450770 - Tigger5 DNA MER2_type -2244 79 1 831 134 99 1 chrX 95149162 95149239 -67450691 + Tigger7 DNA MER2_type 1 69 -2418 198 0 0 0 chrX 95149239 95149261 -67450669 + (GA)n Simple_repeat Simple_repeat 1 22 0 831 134 99 1 chrX 95149261 95149404 -67450526 + Tigger7 DNA MER2_type 69 2408 -79 245 138 0 17 chrX 95149413 95149471 -67450459 + (TA)n Simple_repeat Simple_repeat 1 57 0 469 230 0 0 chrX 95149471 95149558 -67450372 + Tigger7 DNA MER2_type 2401 2487 0 593 100 24 56 chrX 95149884 95150219 -67449711 + (TATAA)n Simple_repeat Simple_repeat 1 324 0 194 324 27 45 chrX 95150352 95150463 -67449467 - L3 LINE CR1 -538 1039 931 185 226 0 57 chrX 95150683 95150736 -67449194 - L2 LINE L2 -2 3311 3262 661 313 96 13 chrX 95150784 95151014 -67448916 - L3 LINE CR1 -929 648 400 264 297 69 10 chrX 95151841 95151942 -67447988 + MIR3 SINE MIR 85 191 -17 6321 89 8 1 chrX 95152442 95154091 -67445839 - L1PA13 LINE L1 0 7601 5941 13964 210 32 19 chrX 95154199 95157872 -67442058 - L1PA13 LINE L1 -2029 5555 1933 2500 109 14 0 chrX 95157872 95158231 -67441699 - THE1B LTR MaLR 0 364 1 9469 112 54 42 chrX 95158231 95159793 -67440137 - THE1B-int LTR MaLR 0 1580 1 2487 119 11 0 chrX 95159793 95160153 -67439777 - THE1B LTR MaLR 0 364 1 13964 210 32 19 chrX 95160153 95160619 -67439311 - L1PA13 LINE L1 -5650 1934 6 306 336 39 16 chrX 95160683 95160811 -67439119 + MIR SINE MIR 20 150 -58 1973 202 74 7 chrX 95160988 95161423 -67438507 - MLT2C2 LTR ERVL 0 464 1 365 205 13 13 chrX 95163525 95163603 -67436327 + MER94 DNA DNA 1 78 -56 476 102 41 10 chrX 95164023 95164121 -67435809 + CT-rich Low_complexity Low_complexity 3 103 0 200 119 0 48 chrX 95164225 95164267 -67435663 + (TTCCC)n Simple_repeat Simple_repeat 2 41 0 856 208 0 0 chrX 95164267 95164426 -67435504 - AluJb SINE Alu -6 306 148 1296 49 0 22 chrX 95164434 95164618 -67435312 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 308 156 0 0 chrX 95165516 95165561 -67434369 + MLT1C LTR MaLR 423 467 0 304 336 82 0 chrX 95165594 95165716 -67434214 + L1ME LINE L1 485 616 -5503 735 235 0 0 chrX 95165721 95165857 -67434073 - FLAM_A SINE Alu -6 136 1 282 275 47 34 chrX 95165897 95166046 -67433884 + L1ME LINE L1 657 807 -5312 348 319 24 12 chrX 95166780 95166946 -67432984 + L1ME LINE L1 2295 2462 -3667 772 284 131 36 chrX 95166965 95167835 -67432095 + L1ME LINE L1 2522 3474 -2655 22 0 0 0 chrX 95218071 95218093 -67381837 + AT_rich Low_complexity Low_complexity 1 22 0 1159 282 107 15 chrX 95218255 95218649 -67381281 + L1MCb LINE L1 83 512 -5613 1901 201 18 23 chrX 95218878 95219267 -67380663 - MSTD LTR MaLR 0 396 10 677 347 14 18 chrX 95219313 95219815 -67380115 + L1ME LINE L1 4676 5175 -954 6843 213 25 19 chrX 95219945 95221395 -67378535 + L1MA2 LINE L1 15 1474 -6091 10538 168 19 17 chrX 95221398 95224639 -67375291 + L1MA2 LINE L1 4476 7723 0 255 290 0 0 chrX 95224692 95224754 -67375176 + L1ME LINE L1 5562 5623 -530 334 274 0 0 chrX 95224951 95225024 -67374906 - MER5C DNA MER1_type -248 76 4 260 238 0 0 chrX 95225067 95225130 -67374800 + L1M1 LINE L1 5713 5775 -527 1815 204 17 27 chrX 95225185 95225596 -67374334 + LTR52 LTR ERVL 14 420 -1 208 341 0 66 chrX 95225710 95225801 -67374129 + L2 LINE L2 2978 3062 -251 23 68 0 0 chrX 95225950 95225994 -67373936 + AT_rich Low_complexity Low_complexity 1 44 0 1378 247 62 33 chrX 95226245 95226699 -67373231 + MLT1C LTR MaLR 1 467 0 884 383 31 18 chrX 95226880 95227600 -67372330 + HERVL LTR ERVL 3637 4365 -1289 1643 216 31 7 chrX 95227696 95228140 -67371790 + L1MCb LINE L1 1095 1549 -4993 548 228 35 32 chrX 95228124 95228334 -67371596 + L1MCb LINE L1 3391 3600 -3044 * 4998 193 23 38 chrX 95228342 95229397 -67370533 + L1MB4 LINE L1 4114 5145 -1038 3436 44 2 2 chrX 95229397 95229854 -67370076 + L1PA7 LINE L1 5705 6161 0 4998 193 23 38 chrX 95229854 95230158 -67369772 + L1MB4 LINE L1 5145 5452 -731 246 143 48 0 chrX 95230161 95230203 -67369727 + MLT1A2 LTR MaLR 331 374 0 1953 174 15 10 chrX 95230204 95230594 -67369336 + L1MB4 LINE L1 5787 6178 -2 308 382 27 21 chrX 95230755 95230941 -67368989 - MER5A DNA MER1_type -2 187 1 384 148 0 0 chrX 95231266 95231327 -67368603 - L1PA16 LINE L1 -11 6155 6095 * 1087 173 23 1 chrX 95231302 95231515 -67368415 - L1PA16 LINE L1 -74 6087 5868 243 326 51 41 chrX 95231652 95231750 -67368180 + L2 LINE L2 3122 3220 -52 309 282 68 8 chrX 95232680 95232797 -67367133 + MIR SINE MIR 80 203 -59 1278 277 44 73 chrX 95232974 95233497 -67366433 + L2 LINE L2 2806 3313 0 758 275 96 4 chrX 95233498 95233727 -67366203 - MIR SINE MIR -11 251 2 399 275 215 0 chrX 95233739 95233888 -67366042 - MIR SINE MIR -13 249 69 240 306 35 12 chrX 95234129 95234214 -67365716 - MIR SINE MIR -85 123 37 1661 150 80 3 chrX 95234372 95234685 -67365245 + MER1B DNA MER1_type 1 337 0 883 294 24 0 chrX 95236216 95236464 -67363466 + MIR SINE MIR 3 256 -6 762 284 22 39 chrX 95237017 95237145 -67362785 + MIR SINE MIR 35 159 -103 2108 143 83 10 chrX 95237145 95237544 -67362386 + MSTA LTR MaLR 1 428 0 762 284 22 39 chrX 95237544 95237647 -67362283 + MIR SINE MIR 159 262 0 238 308 64 0 chrX 95237682 95237760 -67362170 - MIR SINE MIR -111 151 69 273 196 98 49 chrX 95238321 95238382 -67361548 - MER103 DNA DNA -7 159 94 385 179 26 0 chrX 95238382 95238460 -67361470 - MLT1K LTR MaLR 0 588 509 362 243 0 39 chrX 95238460 95238485 -67361445 - LTR67 LTR ERVL 0 557 459 283 256 14 14 chrX 95238715 95238812 -67361118 - MER5A DNA MER1_type -78 106 4 1912 172 49 6 chrX 95239010 95239359 -67360571 + MLT1A1 LTR MaLR 1 364 -1 268 205 39 39 chrX 95239428 95239506 -67360424 - MER103 DNA DNA -81 85 8 504 248 50 0 chrX 95239789 95239930 -67360000 - MER103 DNA DNA -6 160 13 336 143 0 0 chrX 95241429 95241485 -67358445 + (CA)n Simple_repeat Simple_repeat 1 56 0 615 51 104 6 chrX 95242809 95243201 -67356729 + (TA)n Simple_repeat Simple_repeat 1 430 0 38 39 0 0 chrX 95243228 95243280 -67356650 + AT_rich Low_complexity Low_complexity 1 52 0 * 213 104 78 0 chrX 95243231 95243308 -67356622 + (TA)n Simple_repeat Simple_repeat 2 84 0 195 42 0 0 chrX 95243308 95243332 -67356598 + (GA)n Simple_repeat Simple_repeat 2 25 0 407 343 60 12 chrX 95243472 95243723 -67356207 + L1ME4a LINE L1 5381 5643 -478 3315 69 2 39 chrX 95243740 95244201 -67355729 + MLT2A1 LTR ERVL 1 444 0 43412 78 7 1 chrX 95244201 95249823 -67350107 + HERVL-A1-A1 LTR ERVL 1 5654 0 3440 81 0 2 chrX 95249823 95250268 -67349662 + MLT2A1 LTR ERVL 1 444 0 310 248 183 30 chrX 95250293 95250495 -67349435 + L1ME4a LINE L1 5683 5915 -206 197 340 90 50 chrX 95250568 95250768 -67349162 - L2 LINE L2 -168 3104 2897 282 354 88 0 chrX 95250785 95250898 -67349032 - L2 LINE L2 -561 2753 2631 198 259 0 17 chrX 95251029 95251087 -67348843 + L2 LINE L2 3244 3300 -13 1477 173 83 20 chrX 95251562 95251914 -67348016 - MER47B DNA MER2_type 0 418 1 21 82 0 0 chrX 95252126 95252175 -67347755 + AT_rich Low_complexity Low_complexity 1 49 0 3423 121 39 3 chrX 95253468 95254064 -67345866 - L1PBa LINE L1 -4548 2315 1699 1516 116 62 0 chrX 95254081 95254322 -67345608 + L1PBa LINE L1 1 256 -6607 * 11741 183 18 36 chrX 95254316 95254832 -67345098 - L1 LINE L1 -1256 6309 5785 438 86 0 0 chrX 95254832 95254919 -67345011 - Alu SINE Alu 0 310 224 11741 183 18 36 chrX 95254919 95256976 -67342954 - L1 LINE L1 -1780 5785 3761 13617 24 5 0 chrX 95256976 95259345 -67340585 + L1PA3 LINE L1 3777 6150 -5 11741 183 18 36 chrX 95259345 95260260 -67339670 - L1 LINE L1 -3804 3761 2831 6128 217 94 15 chrX 95260273 95260581 -67339349 - L1 LINE L1 -6076 1489 1207 2117 141 125 8 chrX 95260581 95260964 -67338966 - MSTA LTR MaLR 0 428 1 6128 217 94 15 chrX 95260964 95262021 -67337909 - L1 LINE L1 -6358 1207 16 729 244 42 6 chrX 95262021 95262189 -67337741 - MSTD LTR MaLR -220 176 3 236 91 0 0 chrX 95262461 95262494 -67337436 + MER11A LTR ERVK 1 33 -1233 279 349 18 9 chrX 95264381 95264490 -67335440 - L2 LINE L2 0 3313 3204 673 282 110 4 chrX 95264502 95264729 -67335201 + MIR SINE MIR 12 262 0 184 323 30 120 chrX 95264741 95264908 -67335022 - L2 LINE L2 -107 3165 3014 1911 117 0 69 chrX 95265068 95265385 -67334545 + AluSx SINE Alu 1 295 -17 545 251 90 18 chrX 95267421 95267588 -67332342 - MIR SINE MIR 0 262 84 252 366 40 0 chrX 95268462 95268563 -67331367 + L2 LINE L2 3163 3267 -5 459 300 125 42 chrX 95268733 95268973 -67330957 - MIR SINE MIR -2 260 1 261 0 0 0 chrX 95269428 95269457 -67330473 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrX 95269909 95269932 -67329998 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 95270266 95270287 -67329643 + AT_rich Low_complexity Low_complexity 1 21 0 2242 117 0 0 chrX 95271102 95271411 -67328519 + AluSg SINE Alu 1 309 -1 351 0 0 0 chrX 95272054 95272093 -67327837 + (TG)n Simple_repeat Simple_repeat 2 40 0 5767 147 25 29 chrX 95272093 95273794 -67326136 - L1PA15 LINE L1 -11 6154 4470 2548 153 50 7 chrX 95274516 95274953 -67324977 + MER74C LTR ERVL 1 456 -4 810 277 44 17 chrX 95275035 95275281 -67324649 + MIR SINE MIR 9 262 0 2910 72 0 0 chrX 95275751 95276126 -67323804 - L1PA7 LINE L1 -11 6143 5769 225 146 0 0 chrX 95276126 95276174 -67323756 + (T)n Simple_repeat Simple_repeat 1 48 0 43117 31 21 1 chrX 95276174 95282194 -67317736 - L1PA2 LINE L1 0 6155 13 30964 112 15 60 chrX 95282195 95288248 -67311682 - L1PA7 LINE L1 -369 5785 12 243 349 24 24 chrX 95288766 95288849 -67311081 - L3 LINE CR1 -15 1562 1480 199 329 103 27 chrX 95289152 95289298 -67310632 - L2 LINE L2 -435 2879 2723 569 332 102 15 chrX 95289298 95289632 -67310298 - L3 LINE CR1 -251 1326 964 432 309 126 22 chrX 95289651 95289874 -67310056 - MLT1I LTR MaLR -2 407 162 994 316 138 45 chrX 95290016 95290683 -67309247 - L3 LINE CR1 -669 908 180 8610 207 48 35 chrX 95291052 95292864 -67307066 - L1MA4A LINE L1 -23 7342 5555 1247 172 4 22 chrX 95292864 95293091 -67306839 + AluJo SINE Alu 87 309 -3 8610 207 48 35 chrX 95293091 95297002 -67302928 - L1MA4A LINE L1 -1810 5555 1423 756 313 16 8 chrX 95297387 95297630 -67302300 - L1MA4A LINE L1 -6566 643 399 * 12046 205 20 30 chrX 95297624 95301310 -67298620 - L1PA12 LINE L1 -1720 5864 2225 373 107 29 136 chrX 95301310 95301413 -67298517 + THE1A LTR MaLR 1 92 -263 9877 109 7 1 chrX 95301413 95302770 -67297160 + THE1B-int LTR MaLR 216 1580 0 2017 124 75 23 chrX 95302770 95303116 -67296814 + THE1B LTR MaLR 1 364 0 2920 274 34 65 chrX 95303116 95304427 -67295503 - L1PA12 LINE L1 -5352 2229 959 1321 150 8 26 chrX 95304425 95304601 -67295329 - L1PA12 LINE L1 -7351 230 57 * 2108 165 62 7 chrX 95304601 95305007 -67294923 + MSTA LTR MaLR 1 428 0 1321 150 8 26 chrX 95305007 95305064 -67294866 - L1PA12 LINE L1 -7524 57 1 1162 312 60 31 chrX 95305761 95306348 -67293582 + L1MC/D LINE L1 242 845 -5274 483 242 0 0 chrX 95306525 95306616 -67293314 + MER58A DNA MER1_type 1 91 -16 1279 251 71 51 chrX 95306674 95307180 -67292750 + MLT2B1 LTR ERVL 5 520 0 608 259 22 0 chrX 95307180 95307315 -67292615 + MER58A DNA MER1_type 86 223 -1 28 71 0 0 chrX 95307607 95307663 -67292267 + AT_rich Low_complexity Low_complexity 1 56 0 1645 285 70 37 chrX 95307691 95308981 -67290949 + L1MC/D LINE L1 3306 4637 -1492 239 171 0 0 chrX 95308983 95309024 -67290906 - MLT2B1 LTR ERVL 0 520 480 307 344 0 0 chrX 95309031 95309121 -67290809 + (CA)n Simple_repeat Simple_repeat 2 91 0 1567 195 148 75 chrX 95309121 95309546 -67290384 - MLT2B1 LTR ERVL -62 458 3 383 256 143 55 chrX 95309547 95310113 -67289817 + L1MC/D LINE L1 4635 5250 -879 303 252 66 26 chrX 95310134 95310285 -67289645 + L1MC/D LINE L1 5311 5467 -2324 28 0 0 0 chrX 95310356 95310384 -67289546 + AT_rich Low_complexity Low_complexity 1 28 0 361 101 14 14 chrX 95310399 95310468 -67289462 - L1MA2 LINE L1 0 6304 6236 7080 184 25 9 chrX 95310468 95313354 -67286576 + L1M1 LINE L1 2382 5316 -2249 * 11036 203 25 45 chrX 95313343 95314483 -67285447 - L1M1 LINE L1 -5182 2383 1222 2259 123 0 0 chrX 95314483 95314793 -67285137 - AluSx SINE Alu -2 310 1 11036 203 25 45 chrX 95314793 95315890 -67284040 - L1M1 LINE L1 -6343 1222 195 183 42 0 0 chrX 95315890 95315914 -67284016 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 11036 203 25 45 chrX 95315914 95316095 -67283835 - L1M1 LINE L1 -7370 195 12 257 266 114 52 chrX 95316095 95316384 -67283546 - L1ME3A LINE L1 -222 5948 5642 993 213 32 5 chrX 95316405 95316626 -67283304 + L1M1 LINE L1 16 242 -7323 * 3526 107 6 0 chrX 95316624 95317121 -67282809 - THE1B-int LTR MaLR -1080 500 1 2176 131 48 14 chrX 95317121 95317473 -67282457 - THE1B LTR MaLR 0 364 1 2146 140 31 8 chrX 95317631 95317987 -67281943 + THE1B LTR MaLR 1 364 0 21 36 0 0 chrX 95318067 95318095 -67281835 + AT_rich Low_complexity Low_complexity 1 28 0 1548 218 57 11 chrX 95319120 95319469 -67280461 - MLT1A1 LTR MaLR 0 365 1 384 40 0 0 chrX 95319857 95319907 -67280023 + (CA)n Simple_repeat Simple_repeat 2 51 0 192 77 0 0 chrX 95319908 95319934 -67279996 + (GA)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chrX 95320897 95320927 -67279003 + AT_rich Low_complexity Low_complexity 1 30 0 2277 99 3 3 chrX 95321035 95321339 -67278591 - AluSq SINE Alu -9 304 1 25 65 0 0 chrX 95321704 95321750 -67278180 + AT_rich Low_complexity Low_complexity 1 46 0 2546 194 89 19 chrX 95321939 95322269 -67277661 - L1MB7 LINE L1 0 6184 5879 2446 75 0 3 chrX 95322269 95322576 -67277354 - AluY SINE Alu -5 306 1 2546 194 89 19 chrX 95322576 95322839 -67277091 - L1MB7 LINE L1 -305 5879 5549 30 0 0 0 chrX 95323288 95323318 -67276612 + AT_rich Low_complexity Low_complexity 1 30 0 1898 239 68 78 chrX 95324325 95324916 -67275014 - MLT1E LTR MaLR -1 592 8 181 277 15 31 chrX 95326205 95326270 -67273660 + L3 LINE CR1 638 701 -876 1500 196 13 42 chrX 95326415 95326726 -67273204 - AluSx SINE Alu -10 302 1 225 0 0 0 chrX 95327257 95327282 -67272648 + (CA)n Simple_repeat Simple_repeat 1 25 0 300 264 104 56 chrX 95327378 95327522 -67272408 - MIR3 SINE MIR -6 202 52 1411 132 128 12 chrX 95327522 95327765 -67272165 - AluSg SINE Alu -17 293 23 479 352 106 0 chrX 95328020 95328219 -67271711 - MIR SINE MIR -21 241 22 25 0 0 0 chrX 95328704 95328729 -67271201 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chrX 95329139 95329165 -67270765 + AT_rich Low_complexity Low_complexity 1 26 0 539 307 70 33 chrX 95329280 95329739 -67270191 - L1MC/D LINE L1 -2078 5730 5255 1264 147 9 39 chrX 95330065 95330179 -67269751 - MER96B DNA MER1_type? -180 237 132 2198 78 46 0 chrX 95330179 95330460 -67269470 - AluSg SINE Alu -14 296 3 1264 147 9 39 chrX 95330460 95330576 -67269354 - MER96B DNA MER1_type? -285 132 14 2287 283 45 52 chrX 95330588 95331636 -67268294 + L2 LINE L2 2109 3131 -182 405 0 0 0 chrX 95331636 95331681 -67268249 + (TG)n Simple_repeat Simple_repeat 2 46 0 2287 283 45 52 chrX 95331681 95331863 -67268067 + L2 LINE L2 3131 3313 0 542 236 50 34 chrX 95332156 95332313 -67267617 + MIR SINE MIR 52 205 -57 212 371 9 0 chrX 95332341 95332446 -67267484 - MIR SINE MIR -10 252 147 24 0 0 0 chrX 95333240 95333264 -67266666 + AT_rich Low_complexity Low_complexity 1 24 0 14331 176 28 7 chrX 95333270 95333818 -67266112 - L1MA2 LINE L1 0 7723 7188 2081 138 26 32 chrX 95333818 95334195 -67265735 + THE1C LTR MaLR 1 375 0 14331 176 28 7 chrX 95334195 95337624 -67262306 - L1MA2 LINE L1 -535 7188 3575 2274 97 10 0 chrX 95337624 95337922 -67262008 - AluSq SINE Alu -10 303 3 14331 176 28 7 chrX 95337922 95339781 -67260149 - L1MA2 LINE L1 -4148 3575 1756 1799 154 41 35 chrX 95339786 95340155 -67259775 - THE1C LTR MaLR -4 371 1 9732 138 10 32 chrX 95340155 95341768 -67258162 - THE1C-int LTR MaLR 0 1580 3 2141 144 36 17 chrX 95341770 95342131 -67257799 - THE1C LTR MaLR 0 375 8 8164 214 63 6 chrX 95342134 95343794 -67256136 - L1MA2 LINE L1 -5798 1767 14 215 278 83 83 chrX 95345187 95345295 -67254635 + L2 LINE L2 3122 3229 -43 373 332 164 30 chrX 95345300 95345604 -67254326 + MLT1H LTR MaLR 10 354 -195 21 36 0 0 chrX 95345926 95345954 -67253976 + AT_rich Low_complexity Low_complexity 1 28 0 365 307 141 0 chrX 95346020 95346183 -67253747 - MIR SINE MIR -11 251 66 221 328 16 0 chrX 95346419 95346480 -67253450 - L2 LINE L2 -13 3300 3239 387 269 70 19 chrX 95346491 95346647 -67253283 + L1MC4a LINE L1 2006 2169 -4227 1190 272 55 2 chrX 95346690 95347091 -67252839 + L1MC4a LINE L1 2218 2639 -3576 546 67 0 0 chrX 95347134 95347209 -67252721 + (TA)n Simple_repeat Simple_repeat 1 75 0 28 29 0 0 chrX 95347356 95347391 -67252539 + AT_rich Low_complexity Low_complexity 1 35 0 267 268 15 25 chrX 95347720 95347823 -67252107 + MER58 DNA MER1_type 1 283 -58 208 210 16 16 chrX 95348178 95348240 -67251690 + (TA)n Simple_repeat Simple_repeat 1 62 0 458 279 72 94 chrX 95348941 95349084 -67250846 + L1MC4a LINE L1 3873 4018 -2197 3696 151 14 11 chrX 95349084 95349722 -67250208 - L1PA15 LINE L1 -4 6161 5522 458 279 72 94 chrX 95349722 95349940 -67249990 + L1MC4a LINE L1 4018 4226 -1989 323 298 89 24 chrX 95350442 95350690 -67249240 + L1MC4a LINE L1 4252 4515 -1700 3498 167 17 65 chrX 95350720 95351109 -67248821 + L1PA16 LINE L1 4697 5103 -1063 2676 17 0 0 chrX 95351109 95351409 -67248521 + AluYa5 SINE Alu 1 300 -11 3498 167 17 65 chrX 95351409 95352234 -67247696 + L1PA16 LINE L1 5103 5838 -328 2356 81 64 3 chrX 95352239 95352583 -67247347 - L1PA7 LINE L1 -13 6141 5777 626 62 0 0 chrX 95352583 95352661 -67247269 + L1M3 LINE L1 5649 5727 -428 1681 146 48 30 chrX 95352661 95352995 -67246935 + L1PA16 LINE L1 5825 6166 0 554 347 84 34 chrX 95353084 95353706 -67246224 + L1MC4a LINE L1 4646 5298 -917 1107 271 24 87 chrX 95353789 95354534 -67245396 + L1MC4a LINE L1 5368 6101 -89 220 350 17 26 chrX 95354758 95354875 -67245055 - MIR SINE MIR -1 261 146 * 581 292 34 30 chrX 95354868 95355101 -67244829 - MIR SINE MIR -26 236 3 1515 257 32 64 chrX 95357257 95357817 -67242113 + MLT1F1 LTR MaLR 1 567 0 1439 231 62 33 chrX 95358685 95359135 -67240795 - MLT1C LTR MaLR 0 467 5 1692 95 0 4 chrX 95359519 95359750 -67240180 + MER30 DNA MER1_type 1 230 0 772 296 57 33 chrX 95359902 95360291 -67239639 + L1ME4a LINE L1 5490 5887 -234 27 0 0 0 chrX 95360427 95360454 -67239476 + AT_rich Low_complexity Low_complexity 1 27 0 1353 187 76 0 chrX 95360818 95360945 -67238985 + AluJb SINE Alu 3 119 -193 248 0 31 0 chrX 95360945 95360977 -67238953 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1353 187 76 0 chrX 95360977 95361111 -67238819 + AluJb SINE Alu 119 284 -28 26 0 0 0 chrX 95361727 95361753 -67238177 + AT_rich Low_complexity Low_complexity 1 26 0 295 288 51 17 chrX 95362041 95362159 -67237771 + MIR SINE MIR 81 202 -60 23 0 0 0 chrX 95362797 95362820 -67237110 + AT_rich Low_complexity Low_complexity 1 23 0 2460 117 13 16 chrX 95363668 95364043 -67235887 + THE1C LTR MaLR 1 374 -1 9855 115 28 38 chrX 95364045 95365640 -67234290 + THE1C-int LTR MaLR 2 1580 0 2466 91 19 19 chrX 95365640 95366015 -67233915 + THE1C LTR MaLR 1 375 0 224 193 123 0 chrX 95366582 95366639 -67233291 + L2 LINE L2 3206 3269 -3 288 307 0 45 chrX 95368425 95368513 -67231417 + MIR SINE MIR 45 128 -80 2998 198 7 31 chrX 95368513 95369119 -67230811 - LTR39 LTR ERV1 0 783 193 425 298 175 73 chrX 95369146 95369545 -67230385 + MLT1K LTR MaLR 80 519 -69 204 158 0 0 chrX 95369555 95369593 -67230337 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2404 73 3 19 chrX 95371841 95372157 -67227773 + AluY SINE Alu 1 311 0 595 306 73 20 chrX 95372353 95373144 -67226786 - L1ME3A LINE L1 -213 5940 4988 589 273 128 34 chrX 95373313 95373663 -67226267 + MLT1G LTR MaLR 21 358 -232 234 227 11 91 chrX 95373718 95373806 -67226124 + MLT1G LTR MaLR 475 555 0 352 241 45 27 chrX 95373839 95373951 -67225979 + MIR SINE MIR 91 204 -58 338 301 16 43 chrX 95374006 95374262 -67225668 - L1ME3A LINE L1 -1367 4762 4514 843 196 0 0 chrX 95374299 95374442 -67225488 - MER58B DNA MER1_type -1 340 198 2131 65 0 29 chrX 95374665 95374941 -67224989 - AluY SINE Alu -8 303 36 274 253 14 103 chrX 95375054 95375200 -67224730 - L1ME3A LINE L1 -5301 818 686 23 54 0 0 chrX 95375583 95375620 -67224310 + AT_rich Low_complexity Low_complexity 1 37 0 293 297 41 40 chrX 95375621 95375781 -67224149 - L1ME LINE L1 -503 5618 5453 198 0 0 0 chrX 95376622 95376644 -67223286 + (A)n Simple_repeat Simple_repeat 1 22 0 23 68 0 0 chrX 95377059 95377103 -67222827 + AT_rich Low_complexity Low_complexity 1 44 0 5428 162 17 17 chrX 95377765 95379332 -67220598 + L1PA16 LINE L1 4569 6145 -21 228 35 0 0 chrX 95379338 95379367 -67220563 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 725 258 32 5 chrX 95379380 95379566 -67220364 + MIR SINE MIR 72 262 0 241 245 0 0 chrX 95380343 95380396 -67219534 - L2 LINE L2 0 3313 3261 309 217 0 29 chrX 95380779 95380848 -67219082 + 7SK RNA RNA 126 192 -1 1548 204 6 16 chrX 95381016 95381329 -67218601 - AluJo SINE Alu -2 310 1 600 271 30 12 chrX 95385511 95385677 -67214253 - MIR SINE MIR -73 189 21 32 26 0 0 chrX 95385942 95385981 -67213949 + AT_rich Low_complexity Low_complexity 1 39 0 229 284 75 15 chrX 95386259 95386393 -67213537 + MLT1K LTR MaLR 375 516 -72 311 289 48 19 chrX 95387135 95387239 -67212691 - MIR SINE MIR -128 134 28 196 153 12 59 chrX 95387298 95387383 -67212547 + GA-rich Low_complexity Low_complexity 1 81 0 191 345 92 8 chrX 95388328 95388447 -67211483 - L2 LINE L2 -212 3060 2932 463 335 115 33 chrX 95388543 95389057 -67210873 - L2 LINE L2 -493 2821 2266 354 194 0 15 chrX 95390451 95390518 -67209412 + MIR SINE MIR 88 153 -55 661 252 116 76 chrX 95392623 95393227 -67206703 + L1ME4a LINE L1 5460 6087 -34 429 318 87 37 chrX 95393651 95394280 -67205650 - L1ME4a LINE L1 -278 5843 5185 265 256 158 0 chrX 95395141 95395223 -67204707 - MIR3 SINE MIR -42 166 72 195 42 0 0 chrX 95395806 95395830 -67204100 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2292 83 3 0 chrX 95395834 95396124 -67203806 - AluSp SINE Alu -22 291 1 564 288 65 22 chrX 95396152 95396336 -67203594 - MIR3 SINE MIR -14 194 3 239 296 11 11 chrX 95396440 95396528 -67203402 + CT-rich Low_complexity Low_complexity 2 89 0 2726 134 12 0 chrX 95397996 95398415 -67201515 - MSTA LTR MaLR 0 428 5 3854 106 10 5 chrX 95398417 95399003 -67200927 - L1PB2 LINE L1 -6 6145 5557 1686 207 16 45 chrX 95399050 95399426 -67200504 + MLT1A1 LTR MaLR 1 365 0 234 62 0 0 chrX 95399532 95399564 -67200366 + (GGGAGA)n Simple_repeat Simple_repeat 4 35 0 346 347 21 7 chrX 95400113 95400257 -67199673 + L2 LINE L2 3167 3312 -1 231 267 12 23 chrX 95400260 95400346 -67199584 + GA-rich Low_complexity Low_complexity 4 88 0 301 167 0 0 chrX 95400446 95400500 -67199430 + L1ME3A LINE L1 6116 6169 -1 12353 132 20 19 chrX 95400617 95401300 -67198630 - Tigger1 DNA MER2_type 0 2418 1737 1902 163 3 7 chrX 95401300 95401606 -67198324 - AluJb SINE Alu -7 305 1 12353 132 20 19 chrX 95401606 95402938 -67196992 - Tigger1 DNA MER2_type -681 1737 401 181 322 81 0 chrX 95402943 95403030 -67196900 - MIR SINE MIR -92 170 77 1891 164 81 8 chrX 95403373 95403770 -67196160 - MSTB LTR MaLR 0 426 1 227 200 0 0 chrX 95404586 95404636 -67195294 + T-rich Low_complexity Low_complexity 1 50 0 3475 31 7 2 chrX 95404636 95405056 -67194874 - L1PA3 LINE L1 0 6155 5734 8773 25 0 0 chrX 95405156 95406317 -67193613 - L1PA3 LINE L1 -644 5511 4351 * 11178 26 0 0 chrX 95406310 95407673 -67192257 + L1P LINE L1 2070 3432 -2714 318 280 76 17 chrX 95407798 95407916 -67192014 + L2 LINE L2 3148 3272 0 346 336 73 36 chrX 95408065 95408202 -67191728 + L2 LINE L2 3127 3268 -4 204 67 0 0 chrX 95408449 95408479 -67191451 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 186 273 80 57 chrX 95408615 95408703 -67191227 + L3 LINE CR1 920 1009 -568 350 262 29 0 chrX 95408756 95408859 -67191071 - MIR SINE MIR -85 177 72 229 381 8 24 chrX 95409557 95409683 -67190247 + L2 LINE L2 2926 3049 -223 879 236 104 64 chrX 95409717 95410043 -67189887 + MLT1E3 LTR MaLR 3 341 -283 236 192 15 58 chrX 95410039 95410108 -67189822 + MLT1E3 LTR MaLR 431 495 -10 * 201 105 0 53 chrX 95411313 95411351 -67188579 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 187 152 196 0 chrX 95411633 95411679 -67188251 - L2 LINE L2 -1262 2052 1998 393 367 53 50 chrX 95412123 95412779 -67187151 + L2 LINE L2 2275 2932 -382 452 64 81 36 chrX 95415819 95416239 -67183691 + (TA)n Simple_repeat Simple_repeat 1 438 0 325 116 85 0 chrX 95416258 95416422 -67183508 + (TA)n Simple_repeat Simple_repeat 1 178 0 26 50 0 0 chrX 95416423 95416463 -67183467 + AT_rich Low_complexity Low_complexity 1 40 0 270 81 0 0 chrX 95416463 95416500 -67183430 + (CA)n Simple_repeat Simple_repeat 2 38 0 453 76 0 0 chrX 95417177 95417243 -67182687 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 186 209 0 0 chrX 95417267 95417310 -67182620 + CT-rich Low_complexity Low_complexity 3 45 0 933 232 79 70 chrX 95417584 95417899 -67182031 + MLT1E LTR MaLR 1 318 -275 552 309 0 6 chrX 95417897 95418062 -67181868 + MER58B DNA MER1_type 178 341 0 * 236 162 0 81 chrX 95418068 95418142 -67181788 + Zaphod DNA AcHobo 3595 3662 -369 8911 208 19 7 chrX 95418142 95420996 -67178934 - L1PA15 LINE L1 0 6816 3938 5343 242 25 42 chrX 95420998 95423629 -67176301 - L1PA15 LINE L1 -2983 3814 1244 2566 271 56 30 chrX 95423596 95424387 -67175543 - L1PA15 LINE L1 -5936 851 41 * 1274 236 47 0 chrX 95424592 95424790 -67175140 + Zaphod DNA AcHobo 3655 3842 -189 387 0 0 0 chrX 95424790 95424833 -67175097 + (TA)n Simple_repeat Simple_repeat 2 44 0 1274 236 47 0 chrX 95424833 95424994 -67174936 + Zaphod DNA AcHobo 3842 4031 0 2295 187 29 19 chrX 95425918 95426431 -67173499 - L1MC2 LINE L1 -11 6333 5816 13992 201 35 23 chrX 95426490 95427100 -67172830 - L1MA4 LINE L1 -35 6447 5846 477 0 0 0 chrX 95427100 95427153 -67172777 + (TA)n Simple_repeat Simple_repeat 1 53 0 13992 201 35 23 chrX 95427153 95432235 -67167695 - L1MA4 LINE L1 -636 5846 693 2132 118 3 23 chrX 95432235 95432540 -67167390 - AluSq SINE Alu -13 300 2 13992 201 35 23 chrX 95432540 95432698 -67167232 - L1MA4 LINE L1 -5789 693 538 385 122 0 0 chrX 95432698 95432779 -67167151 - MLT2A2 LTR ERVL 0 458 399 500 156 22 17 chrX 95432788 95432967 -67166963 + (TA)n Simple_repeat Simple_repeat 1 180 0 729 138 0 30 chrX 95432981 95433360 -67166570 + (TA)n Simple_repeat Simple_repeat 1 367 0 304 287 35 35 chrX 95433360 95433475 -67166455 + L1MC4 LINE L1 6589 6703 -1339 304 287 35 35 chrX 95433500 95433615 -67166315 + L1MC4 LINE L1 6589 6703 -1339 22 56 0 0 chrX 95433616 95433652 -67166278 + AT_rich Low_complexity Low_complexity 1 36 0 636 108 41 14 chrX 95433657 95434011 -67165919 + (TA)n Simple_repeat Simple_repeat 1 363 0 2643 93 44 13 chrX 95434025 95434412 -67165518 - MLT2A1 LTR ERVL -45 399 1 35473 77 7 4 chrX 95434412 95438975 -67160955 - HERVL-A1-A1 LTR ERVL 0 5654 1079 3039 74 0 0 chrX 95438959 95439349 -67160581 - HERVL-A1-A1 LTR ERVL -5264 390 1 * 2711 100 47 14 chrX 95439349 95439779 -67160151 - MLT2A1 LTR ERVL 0 444 1 1937 176 13 0 chrX 95439779 95440086 -67159844 - L1MA4 LINE L1 -4786 542 232 3978 156 21 24 chrX 95440086 95440799 -67159131 + MER50 LTR ERV1 1 711 -23 6202 139 55 12 chrX 95440842 95442488 -67157442 + MER50-int LTR ERV1 1 1804 -5401 207 0 0 0 chrX 95442488 95442511 -67157419 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6202 139 55 12 chrX 95442511 95442561 -67157369 + MER50-int LTR ERV1 1804 1850 -5355 2932 174 5 4 chrX 95442557 95443266 -67156664 + MER50-int LTR ERV1 1004 3744 -1136 * 2552 129 0 0 chrX 95443266 95443630 -67156300 + THE1B LTR MaLR 1 364 0 6266 101 43 146 chrX 95443630 95444906 -67155024 + THE1B-int LTR MaLR 1 1145 -435 12922 143 26 19 chrX 95444961 95445240 -67154690 + MER50-int LTR ERV1 1353 1629 -5576 191 284 63 21 chrX 95445240 95445335 -67154595 + MIR SINE MIR 23 121 -141 12922 143 26 19 chrX 95445335 95448837 -67151093 + MER50-int LTR ERV1 1629 6205 -1000 1665 208 10 3 chrX 95448839 95449133 -67150797 - AluSx SINE Alu -16 296 1 2594 108 0 8 chrX 95449145 95449506 -67150424 + MER50-int LTR ERV1 6840 7197 -8 3202 158 36 7 chrX 95449506 95449554 -67150376 + MER50 LTR ERV1 1 46 -688 305 24 24 0 chrX 95449554 95449596 -67150334 + (CA)n Simple_repeat Simple_repeat 2 44 0 3202 158 36 7 chrX 95449596 95450122 -67149808 + MER50 LTR ERV1 46 592 -142 890 107 15 0 chrX 95450122 95450253 -67149677 + MER50-int LTR ERV1 5932 6064 -1141 771 134 25 0 chrX 95450261 95450380 -67149550 + MER50 LTR ERV1 598 719 -15 1060 178 13 78 chrX 95450385 95450616 -67149314 - L1M3f LINE L1 -5103 225 10 2459 216 31 14 chrX 95450626 95450840 -67149090 - L1MC2 LINE L1 -519 5825 5616 1974 149 42 25 chrX 95450840 95451195 -67148735 - THE1B LTR MaLR -3 361 1 2459 216 31 14 chrX 95451195 95451963 -67147967 - L1MC2 LINE L1 -728 5616 4829 25 31 0 0 chrX 95452622 95452654 -67147276 + AT_rich Low_complexity Low_complexity 1 32 0 226 115 39 0 chrX 95453486 95453538 -67146392 + (TA)n Simple_repeat Simple_repeat 1 54 0 14836 215 28 30 chrX 95454253 95454590 -67145340 - L1PA15 LINE L1 -6 6810 6474 180 0 0 0 chrX 95454590 95454610 -67145320 + (TTG)n Simple_repeat Simple_repeat 2 21 0 14836 215 28 30 chrX 95454610 95454920 -67145010 - L1PA15 LINE L1 -342 6474 6165 2163 115 3 3 chrX 95454920 95455225 -67144705 - AluSg SINE Alu -5 305 1 14836 215 28 30 chrX 95455225 95457528 -67142402 - L1PA15 LINE L1 -651 6165 3860 1905 140 73 25 chrX 95457528 95457886 -67142044 + THE1C LTR MaLR 1 375 0 14836 215 28 30 chrX 95457886 95460582 -67139348 - L1PA15 LINE L1 -2956 3860 1158 216 0 0 0 chrX 95461069 95461093 -67138837 + (T)n Simple_repeat Simple_repeat 1 24 0 356 301 94 24 chrX 95461580 95461793 -67138137 + MIR SINE MIR 29 256 -6 188 318 32 0 chrX 95462734 95462797 -67137133 - MIR SINE MIR -121 141 77 1194 288 62 22 chrX 95463040 95463488 -67136442 + MLT1J LTR MaLR 4 469 -42 285 333 17 8 chrX 95463874 95463991 -67135939 + MER117 DNA MER1_type 1 118 -79 26 64 0 0 chrX 95464696 95464743 -67135187 + AT_rich Low_complexity Low_complexity 1 47 0 348 281 89 7 chrX 95464746 95464881 -67135049 + L1ME4a LINE L1 5959 6104 -17 470 129 0 0 chrX 95465042 95465112 -67134818 - THE1C LTR MaLR -2 373 304 25882 141 14 14 chrX 95465112 95471486 -67128444 + L1PA8A LINE L1 3 6471 -9 504 132 0 0 chrX 95471486 95471562 -67128368 - THE1C LTR MaLR -57 318 243 569 209 108 48 chrX 95471958 95472230 -67127700 - MER39 LTR ERV1 -195 481 9 2299 73 0 32 chrX 95472849 95473164 -67126766 - AluY SINE Alu -6 305 1 1110 277 89 41 chrX 95523279 95523741 -67076189 + MLT1H LTR MaLR 50 533 -16 240 35 0 0 chrX 95523880 95523909 -67076021 + (TG)n Simple_repeat Simple_repeat 2 30 0 2356 42 0 3 chrX 95525392 95525708 -67074222 - AluY SINE Alu 0 315 1 1083 88 0 22 chrX 95526481 95526663 -67073267 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 249 33 0 0 chrX 95526667 95526697 -67073233 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 1162 113 6 0 chrX 95526699 95526859 -67073071 - FRAM SINE Alu -23 153 1 599 189 0 27 chrX 95526950 95527061 -67072869 - FLAM_C SINE Alu -32 111 4 282 335 20 33 chrX 95527247 95527399 -67072531 + MIR SINE MIR 57 206 -56 237 243 47 75 chrX 95529007 95529114 -67070816 - MIR SINE MIR -47 215 112 445 198 16 0 chrX 95529925 95530051 -67069879 + (TAG)n Simple_repeat Simple_repeat 3 130 0 523 267 60 69 chrX 95530073 95530126 -67069804 - MIR SINE MIR -3 259 207 1389 12 0 0 chrX 95530126 95530286 -67069644 - L1PA2 LINE L1 0 6155 5996 523 267 60 69 chrX 95530286 95530464 -67069466 - MIR SINE MIR -55 207 30 198 103 0 0 chrX 95534754 95534783 -67065147 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 8405 246 52 29 chrX 95535870 95536492 -67063438 + L1MD2 LINE L1 2408 3014 -3345 1775 173 10 19 chrX 95536492 95536805 -67063125 + AluJb SINE Alu 2 311 -1 8405 246 52 29 chrX 95536805 95540032 -67059898 + L1MD2 LINE L1 3014 6356 -3 366 194 19 9 chrX 95540225 95540333 -67059597 + GA-rich Low_complexity Low_complexity 5 113 0 21 36 0 0 chrX 95540789 95540817 -67059113 + AT_rich Low_complexity Low_complexity 1 28 0 3121 175 87 49 chrX 95541114 95541870 -67058060 + LTR1 LTR ERV1 1 785 0 266 217 0 0 chrX 95542087 95542147 -67057783 - L1ME3A LINE L1 -5 6165 6106 1692 268 60 13 chrX 95542176 95542714 -67057216 - L1ME1 LINE L1 -6 6143 5581 911 300 87 39 chrX 95543012 95543758 -67056172 - L1ME1 LINE L1 -1820 4309 3528 436 246 91 27 chrX 95543829 95544126 -67055804 - L1ME1 LINE L1 -2734 3395 3080 247 294 96 7 chrX 95544135 95544271 -67055659 - L1M2 LINE L1 -4319 2530 2383 529 303 75 44 chrX 95544497 95544910 -67055020 - L1ME1 LINE L1 -5233 886 461 24 32 0 0 chrX 95545188 95545219 -67054711 + AT_rich Low_complexity Low_complexity 1 31 0 4286 126 5 1 chrX 95545268 95545928 -67054002 + L1MA4A LINE L1 5630 6291 -12 360 223 43 32 chrX 95545991 95546085 -67053845 - L1MD2 LINE L1 -69 6290 6196 1055 209 117 15 chrX 95546100 95546373 -67053557 - MER2 DNA MER2_type -1 344 44 270 293 135 0 chrX 95546622 95546755 -67053175 + L2 LINE L2 2124 2274 -1040 1566 151 195 19 chrX 95546847 95547211 -67052719 - MSTA LTR MaLR 0 428 1 214 348 149 62 chrX 95547650 95548038 -67051892 + L2 LINE L2 2851 3272 0 23 0 0 0 chrX 95548227 95548250 -67051680 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 95548395 95548417 -67051513 + AT_rich Low_complexity Low_complexity 1 22 0 321 89 0 0 chrX 95548916 95548961 -67050969 + (CA)n Simple_repeat Simple_repeat 2 46 0 703 325 24 8 chrX 95550853 95551099 -67048831 - MIR SINE MIR -1 261 12 2474 119 6 0 chrX 95551624 95551984 -67047946 - THE1B LTR MaLR -2 362 1 9707 135 35 3 chrX 95551984 95553516 -67046414 - THE1B-int LTR MaLR 0 1580 1 2521 95 11 6 chrX 95553520 95553879 -67046051 - THE1B LTR MaLR -3 361 1 373 291 78 28 chrX 95554077 95554256 -67045674 + L2 LINE L2 3015 3202 -111 666 118 0 0 chrX 95554273 95554375 -67045555 + (TA)n Simple_repeat Simple_repeat 2 103 0 2237 78 0 20 chrX 95554432 95554727 -67045203 + AluY SINE Alu 1 289 -22 704 259 190 20 chrX 95554891 95555227 -67044703 - L1ME2 LINE L1 -3 6097 5705 1380 234 77 14 chrX 95555230 95555644 -67044286 - L1ME2 LINE L1 -426 5672 5233 1490 208 93 44 chrX 95555644 95556096 -67043834 + MLT1D LTR MaLR 1 474 -31 2334 71 3 3 chrX 95556096 95556392 -67043538 - AluY SINE Alu -15 296 1 756 223 78 72 chrX 95556429 95556711 -67043219 - L1ME2 LINE L1 -847 5233 4947 659 127 0 0 chrX 95556711 95556821 -67043109 - L1PA13 LINE L1 -3 6160 6051 756 223 78 72 chrX 95556821 95556870 -67043060 - L1ME2 LINE L1 -1133 4947 4900 1099 184 73 21 chrX 95556870 95557103 -67042827 - MER58 DNA MER1_type -2174 246 2 1194 295 73 32 chrX 95557120 95558371 -67041559 - L1ME2 LINE L1 -4377 1703 142 2390 119 8 22 chrX 95559366 95559735 -67040195 + THE1B LTR MaLR 1 364 0 2406 110 302 0 chrX 95559735 95560179 -67039751 + THE1B-int LTR MaLR 1 578 -1002 * 6360 107 1 0 chrX 95560176 95561042 -67038888 + THE1B-int LTR MaLR 710 1576 -4 409 41 0 0 chrX 95561046 95561095 -67038835 + THE1B LTR MaLR 1 49 -315 * 1298 138 48 24 chrX 95561094 95561304 -67038626 + THE1B LTR MaLR 150 364 0 355 314 20 0 chrX 95561593 95561695 -67038235 - L2 LINE L2 -5 3308 3205 290 277 28 124 chrX 95561824 95562001 -67037929 - MER5A DNA MER1_type 0 189 30 * 341 231 24 142 chrX 95561847 95562016 -67037914 + MER5A DNA MER1_type 35 183 -6 1926 148 0 23 chrX 95562082 95562386 -67037544 - AluJb SINE Alu -15 297 1 352 323 100 54 chrX 95562484 95562815 -67037115 + L1MCb LINE L1 58 403 -5642 314 269 46 39 chrX 95563050 95563180 -67036750 + L1MCb LINE L1 443 573 -5473 1202 146 31 1 chrX 95563242 95563519 -67036411 + MER2 DNA MER2_type 23 345 0 1548 240 74 6 chrX 95563520 95564096 -67035834 + L1MCb LINE L1 679 1293 -4889 1176 190 112 34 chrX 95564119 95564387 -67035543 + MLT1D LTR MaLR 114 402 -103 1499 204 90 57 chrX 95564574 95565063 -67034867 + MLT1D LTR MaLR 1 505 0 22 35 0 0 chrX 95565260 95565289 -67034641 + AT_rich Low_complexity Low_complexity 1 29 0 368 297 80 14 chrX 95566355 95566493 -67033437 + MER20B DNA MER1_type 1 147 -636 2271 122 30 22 chrX 95566544 95566905 -67033025 - THE1B LTR MaLR 0 364 1 1814 181 14 24 chrX 95567289 95567659 -67032271 + MER47A DNA MER2_type 1 366 0 365 270 35 63 chrX 95568181 95568355 -67031575 - MIR SINE MIR -5 257 89 217 326 0 21 chrX 95570332 95570427 -67029503 + L3b LINE CR1 1177 1269 -314 471 298 159 5 chrX 95570808 95571016 -67028914 + MIR SINE MIR 2 241 -21 207 0 0 0 chrX 95571276 95571299 -67028631 + (TG)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chrX 95571305 95571326 -67028604 + (CA)n Simple_repeat Simple_repeat 2 22 0 2254 128 34 11 chrX 95571378 95571731 -67028199 + THE1B LTR MaLR 3 363 -1 722 171 23 11 chrX 95572065 95572241 -67027689 + GA-rich Low_complexity Low_complexity 3 180 0 2289 83 6 13 chrX 95574555 95574867 -67025063 - AluSq SINE Alu -3 310 1 25 31 0 0 chrX 95575491 95575523 -67024407 + AT_rich Low_complexity Low_complexity 1 32 0 396 86 0 0 chrX 95575529 95575587 -67024343 - Alu SINE Alu -1 299 242 12600 152 58 11 chrX 95575978 95578287 -67021643 + Tigger1 DNA MER2_type 1 2418 0 2217 249 42 17 chrX 95578319 95579089 -67020841 + L1M4 LINE L1 2235 3023 -3123 746 269 84 24 chrX 95579126 95579461 -67020469 + L1ME1 LINE L1 5794 6148 -18 1048 228 55 14 chrX 95580148 95580495 -67019435 - LTR37B LTR ERV1 -6 462 102 255 316 95 32 chrX 95582078 95582236 -67017694 - MIR SINE MIR -28 234 67 315 0 0 0 chrX 95582638 95582673 -67017257 + (CA)n Simple_repeat Simple_repeat 2 36 0 228 330 44 0 chrX 95583076 95583167 -67016763 - MIR3 SINE MIR -24 184 90 267 281 0 0 chrX 95583621 95583685 -67016245 + L2 LINE L2 3250 3313 0 21 36 0 0 chrX 95584309 95584337 -67015593 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chrX 95584783 95584811 -67015119 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chrX 95585442 95585464 -67014466 + AT_rich Low_complexity Low_complexity 1 22 0 1145 126 20 118 chrX 95585902 95586156 -67013774 - L1MA9 LINE L1 -84 6228 6000 813 236 101 19 chrX 95586244 95586502 -67013428 - L1ME3 LINE L1 -9 6153 5875 4486 186 76 9 chrX 95586511 95588353 -67011577 - L1MB1 LINE L1 0 6168 4195 2837 139 41 40 chrX 95588366 95588897 -67011033 + Tigger1 DNA MER2_type 1322 1853 -565 2366 84 0 0 chrX 95588900 95589198 -67010732 + AluSg SINE Alu 2 299 -11 657 148 0 0 chrX 95589198 95589299 -67010631 - L1MA4 LINE L1 -533 5767 5667 2772 143 29 4 chrX 95589299 95589784 -67010146 + L1MA4 LINE L1 5799 6300 0 3648 155 7 2 chrX 95589796 95590390 -67009540 + Tigger1 DNA MER2_type 1822 2418 0 1692 167 27 10 chrX 95590438 95590738 -67009192 - AluSx SINE Alu -7 305 1 22 0 0 0 chrX 95591996 95592018 -67007912 + AT_rich Low_complexity Low_complexity 1 22 0 816 323 90 29 chrX 95592754 95593175 -67006755 - MLT1K LTR MaLR -6 582 136 350 295 115 6 chrX 95593276 95593432 -67006498 + MIR SINE MIR 83 255 -7 340 239 84 42 chrX 95594453 95594666 -67005264 + L1M4 LINE L1 2131 2352 -3794 1566 231 98 91 chrX 95594722 95595484 -67004446 + L1MC4 LINE L1 7042 7809 -233 24 32 0 0 chrX 95595689 95595720 -67004210 + AT_rich Low_complexity Low_complexity 1 31 0 202 128 0 26 chrX 95596033 95596072 -67003858 + (TCTCTG)n Simple_repeat Simple_repeat 6 43 0 2527 57 0 10 chrX 95597186 95597500 -67002430 + AluY SINE Alu 1 311 0 316 300 16 21 chrX 95597569 95597759 -67002171 + L1M4 LINE L1 3846 4034 -2112 352 361 78 5 chrX 95597825 95598030 -67001900 + L1M4 LINE L1 2890 3109 -3037 608 203 65 124 chrX 95598032 95598249 -67001681 + MIR SINE MIR 1 204 -58 644 313 49 40 chrX 95598295 95599047 -67000883 + L1M4 LINE L1 3115 3873 -2273 254 315 256 30 chrX 95599526 95599729 -67000201 + MIR SINE MIR 3 251 -11 564 298 50 28 chrX 95600981 95601199 -66998731 - MIR SINE MIR -28 234 12 21 36 0 0 chrX 95601775 95601803 -66998127 + AT_rich Low_complexity Low_complexity 1 28 0 6216 161 21 2 chrX 95601803 95603928 -66996002 - L1PB2 LINE L1 -1 6150 3995 * 10671 233 29 17 chrX 95603911 95608947 -66990983 - L1MC1 LINE L1 -7 6395 1334 1847 159 130 16 chrX 95608947 95609331 -66990599 - MSTA LTR MaLR 0 428 1 7827 137 11 30 chrX 95609332 95610639 -66989291 - MSTA-int LTR MaLR -16 1564 282 5371 242 34 19 chrX 95610620 95610756 -66989174 - L1 LINE L1 -1814 4332 4200 * 2924 133 2 0 chrX 95610756 95611183 -66988747 - MSTA LTR MaLR 0 428 1 5371 242 34 19 chrX 95611183 95612766 -66987164 - L1 LINE L1 -1946 4200 2587 30 45 0 0 chrX 95613701 95613745 -66986185 + AT_rich Low_complexity Low_complexity 1 44 0 2693 74 11 3 chrX 95614167 95614519 -66985411 + THE1A LTR MaLR 1 355 0 10918 106 24 1 chrX 95614519 95616040 -66983890 + THE1A-int LTR MaLR 1 1557 -23 786 182 25 13 chrX 95616118 95616277 -66983653 - MLT1A2 LTR MaLR -213 161 1 1655 179 31 31 chrX 95616490 95616843 -66983087 + MLT1A1 LTR MaLR 13 365 0 1052 298 14 11 chrX 95616992 95617271 -66982659 + ERVL LTR ERVL 4510 4789 -975 4595 128 16 13 chrX 95617340 95617546 -66982384 - Tigger1 DNA MER2_type -127 2291 2087 2773 20 0 0 chrX 95617546 95617851 -66982079 - AluYa5 SINE Alu -6 305 1 4595 128 16 13 chrX 95617851 95618391 -66981539 - Tigger1 DNA MER2_type -331 2087 1543 2360 81 7 0 chrX 95618447 95618743 -66981187 - AluSc SINE Alu -11 298 1 280 258 0 0 chrX 95618743 95618809 -66981121 + Ricksha DNA DNA 275 340 -2906 1353 320 53 29 chrX 95618817 95619463 -66980467 + MLT2F LTR ERVL 3 663 0 340 273 173 20 chrX 95620092 95620242 -66979688 + L2 LINE L2 3097 3269 -3 219 69 0 0 chrX 95622819 95622848 -66977082 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 85 0 21 chrX 95623345 95623392 -66976538 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 245 212 76 15 chrX 95623647 95623713 -66976217 + MIR3 SINE MIR 10 79 -129 357 367 75 50 chrX 95623863 95624567 -66975363 - L2 LINE L2 -3 3269 2545 294 194 0 0 chrX 95624578 95624645 -66975285 + GA-rich Low_complexity Low_complexity 2 68 0 977 368 92 36 chrX 95624645 95626090 -66973840 - L2 LINE L2 -775 2539 1014 310 228 65 0 chrX 95626433 95626525 -66973405 - L1MC4 LINE L1 -1331 6711 6614 213 39 0 0 chrX 95626847 95626873 -66973057 + (TA)n Simple_repeat Simple_repeat 2 27 0 4632 163 41 69 chrX 95626992 95628544 -66971386 + L1MA10 LINE L1 4673 6324 -10 23 0 0 0 chrX 95628560 95628583 -66971347 + AT_rich Low_complexity Low_complexity 1 23 0 203 242 65 16 chrX 95628583 95628645 -66971285 - MIR SINE MIR -151 111 47 197 132 26 0 chrX 95629331 95629369 -66970561 + (TA)n Simple_repeat Simple_repeat 2 40 0 532 220 0 0 chrX 95630587 95630696 -66969234 - MER3 DNA MER1_type 0 209 101 356 345 48 67 chrX 95631125 95631499 -66968431 - L2 LINE L2 -29 3284 2918 302 304 87 29 chrX 95633087 95633225 -66966705 - MIR SINE MIR -114 148 3 356 203 13 0 chrX 95633981 95634060 -66965870 - MER116 DNA Mariner 0 80 1 735 259 127 0 chrX 95634425 95634614 -66965316 - MER58C DNA MER1_type -2 213 1 340 293 79 7 chrX 95634734 95634874 -66965056 + MIR3 SINE MIR 54 203 -5 322 358 51 7 chrX 95635613 95635761 -66964169 - MIR3 SINE MIR -48 160 4 308 151 0 0 chrX 95635961 95636014 -66963916 - L1PB1 LINE L1 -662 5489 5437 4612 79 21 3 chrX 95636014 95636641 -66963289 + L1PB1 LINE L1 5505 6147 -4 212 330 85 11 chrX 95636904 95636998 -66962932 + L2 LINE L2 3196 3296 -17 22 0 0 0 chrX 95639132 95639154 -66960776 + AT_rich Low_complexity Low_complexity 1 22 0 3597 49 4 0 chrX 95639164 95639614 -66960316 - L1PA6 LINE L1 -2 6152 5701 2331 102 68 23 chrX 95639796 95640216 -66959714 + LTR25 LTR ERV1 408 794 0 1729 117 4 0 chrX 95642472 95642721 -66957209 + AluSg SINE Alu 56 305 -5 425 333 21 21 chrX 95643540 95643726 -66956204 - MER5A DNA MER1_type -2 187 2 248 327 12 130 chrX 95644659 95644913 -66955017 - L2 LINE L2 -15 3257 3034 405 0 0 0 chrX 95645245 95645290 -66954640 + (TG)n Simple_repeat Simple_repeat 2 46 0 244 312 65 11 chrX 95646354 95646447 -66953483 + MIR SINE MIR 44 141 -67 19728 190 29 20 chrX 95646643 95653388 -66946542 + L1PA13 LINE L1 1 7600 -1 23 54 0 0 chrX 95653390 95653427 -66946503 + AT_rich Low_complexity Low_complexity 1 37 0 372 292 91 13 chrX 95653736 95653890 -66946040 + L1ME LINE L1 5266 5431 -690 9385 168 63 34 chrX 95654066 95657063 -66942867 - L1PBa LINE L1 -2052 4810 1685 2157 117 0 0 chrX 95657063 95657346 -66942584 + AluY SINE Alu 7 289 -22 9385 168 63 34 chrX 95657346 95657936 -66941994 - L1PBa LINE L1 -5177 1685 1113 867 220 20 0 chrX 95657927 95658127 -66941803 - L1PBa LINE L1 -6659 204 1 * 730 249 18 0 chrX 95658255 95658420 -66941510 - HERVL40 LTR ERVL 0 5530 5363 555 179 57 29 chrX 95658470 95658715 -66941215 - MLT1B LTR MaLR 0 374 22 180 77 0 0 chrX 95658767 95658793 -66941137 + (T)n Simple_repeat Simple_repeat 1 26 0 575 162 0 9 chrX 95658807 95658918 -66941012 + L1PA15 LINE L1 6044 6153 -12 2094 125 0 13 chrX 95658919 95659230 -66940700 + AluY SINE Alu 1 307 -4 658 137 60 71 chrX 95659233 95659416 -66940514 - L1MA8 LINE L1 -22 6269 6089 264 316 20 53 chrX 95659435 95659587 -66940343 - HERVL40 LTR ERVL -353 4670 4524 566 263 36 103 chrX 95659678 95660036 -66939894 - HERVL40 LTR ERVL -327 2710 2377 319 274 0 21 chrX 95660289 95660384 -66939546 - HERVL40 LTR ERVL -909 2128 2036 5902 266 31 12 chrX 95660384 95661949 -66937981 - HERVL40 LTR ERVL -1237 4293 2699 5322 101 21 5 chrX 95661953 95662718 -66937212 + L1PA10 LINE L1 5382 6158 -10 583 226 15 15 chrX 95662727 95662860 -66937070 - HERVL40 LTR ERVL -2876 2654 2522 * 1655 294 77 26 chrX 95662859 95663212 -66936718 - HERVL40 LTR ERVL -3919 1611 1277 2652 70 8 17 chrX 95663212 95663570 -66936360 - THE1A LTR MaLR 0 355 1 1655 294 77 26 chrX 95663570 95663866 -66936064 - HERVL40 LTR ERVL -4253 1277 929 362 307 51 6 chrX 95663987 95664163 -66935767 - HERVL40 LTR ERVL -5344 186 3 1858 253 35 16 chrX 95664167 95664676 -66935254 - LTR40a LTR ERVL 0 519 1 229 279 0 0 chrX 95665206 95665292 -66934638 + L1MC4 LINE L1 6618 6703 -1339 336 133 0 0 chrX 95665296 95665356 -66934574 + (TA)n Simple_repeat Simple_repeat 2 61 0 484 333 176 0 chrX 95665520 95665799 -66934131 - L2 LINE L2 0 3313 2986 380 375 44 25 chrX 95666546 95666863 -66933067 + LTR16C LTR ERVL 159 481 -10 1231 229 6 6 chrX 95667164 95667496 -66932434 + MLT1A1 LTR MaLR 1 365 0 419 242 48 32 chrX 95667633 95667819 -66932111 - L1MC5 LINE L1 -450 7511 7323 395 319 30 12 chrX 95667825 95667994 -66931936 - L1MC4 LINE L1 -557 7485 7314 3575 75 4 6 chrX 95668298 95668776 -66931154 + L1PA6 LINE L1 5667 6143 -11 186 133 0 0 chrX 95668799 95668829 -66931101 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1585 189 0 11 chrX 95668855 95669141 -66930789 + AluJb SINE Alu 1 283 -29 1999 74 3 81 chrX 95669467 95669776 -66930154 + AluY SINE Alu 27 311 0 4576 161 9 26 chrX 95669792 95671683 -66928247 + L1PA16 LINE L1 4446 6285 -6 1447 304 45 27 chrX 95671858 95672441 -66927489 - MLT1E LTR MaLR 0 593 1 27 0 0 0 chrX 95672528 95672555 -66927375 + AT_rich Low_complexity Low_complexity 1 27 0 552 271 100 9 chrX 95672556 95672906 -66927024 - L1ME4a LINE L1 -28 6093 5712 1677 157 39 11 chrX 95673117 95673403 -66926527 + AluJo SINE Alu 16 309 -3 25 0 0 0 chrX 95673799 95673824 -66926106 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chrX 95674011 95674041 -66925889 + AT_rich Low_complexity Low_complexity 1 30 0 228 235 153 10 chrX 95674685 95674783 -66925147 + L2 LINE L2 3128 3239 -74 252 324 0 0 chrX 95674783 95674857 -66925073 + CT-rich Low_complexity Low_complexity 2 75 0 268 132 94 19 chrX 95674868 95674921 -66925009 + L2 LINE L2 3216 3272 0 183 129 0 0 chrX 95675909 95675940 -66923990 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 24 0 0 0 chrX 95676205 95676229 -66923701 + AT_rich Low_complexity Low_complexity 1 24 0 280 277 76 17 chrX 95677314 95677433 -66922497 - MIR SINE MIR -90 172 47 1997 127 0 22 chrX 95678151 95678467 -66921463 + AluSq SINE Alu 1 309 -4 246 264 27 108 chrX 95680362 95680510 -66919420 + L3 LINE CR1 547 682 -895 651 254 16 11 chrX 95680644 95680829 -66919101 + L1M4 LINE L1 16 201 -6341 979 83 145 0 chrX 95680836 95680981 -66918949 - L1PA7 LINE L1 -13 6141 5976 9688 231 54 49 chrX 95680987 95685205 -66914725 + L1M4 LINE L1 1476 5725 -919 319 191 36 0 chrX 95685255 95685339 -66914591 - L1MA10 LINE L1 -7 6327 6241 441 197 74 39 chrX 95685355 95685512 -66914418 + L1M4c LINE L1 2237 2404 -3980 2771 91 3 0 chrX 95685512 95685873 -66914057 + THE1B LTR MaLR 1 362 -2 441 197 74 39 chrX 95685873 95685918 -66914012 + L1M4c LINE L1 2404 2446 -3938 2050 131 0 0 chrX 95685930 95686212 -66913718 + AluSx SINE Alu 1 282 -30 189 0 0 0 chrX 95686219 95686240 -66913690 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 924 200 4 92 chrX 95686275 95686422 -66913508 + MLT2B1 LTR ERVL 302 422 -98 183 42 0 0 chrX 95686422 95686446 -66913484 + (TG)n Simple_repeat Simple_repeat 1 24 0 924 200 4 92 chrX 95686446 95686538 -66913392 + MLT2B1 LTR ERVL 422 520 0 3318 231 48 15 chrX 95686539 95687287 -66912643 + ERVL-B1-B1 LTR ERVL 2 774 -4990 1565 184 8 4 chrX 95687270 95687525 -66912405 + ERVL-B1-B1 LTR ERVL 686 941 -4823 * 22923 182 25 16 chrX 95687514 95691686 -66908244 + ERVL-B1-B1 LTR ERVL 1547 5757 -7 2402 196 67 18 chrX 95691686 95692182 -66907748 + MLT2B1 LTR ERVL 1 520 0 315 85 0 0 chrX 95692239 95692286 -66907644 + (CA)n Simple_repeat Simple_repeat 1 47 0 186 348 120 0 chrX 95692498 95692590 -66907340 - L2 LINE L2 -8 3264 3162 221 303 45 15 chrX 95693044 95693110 -66906820 - L3b LINE CR1 -2 1581 1514 251 369 30 42 chrX 95693117 95693285 -66906645 + MER5A DNA MER1_type 24 189 0 200 154 49 57 chrX 95693344 95693467 -66906463 + (TTTAA)n Simple_repeat Simple_repeat 1 122 0 335 289 57 22 chrX 95694223 95694565 -66905365 + L1M4b LINE L1 1371 1848 -5099 240 376 15 38 chrX 95695489 95695622 -66904308 + MIR SINE MIR 14 143 -119 197 206 0 16 chrX 95697289 95697352 -66902578 + (TA)n Simple_repeat Simple_repeat 2 63 0 599 284 104 0 chrX 95697354 95697537 -66902393 - MIR SINE MIR -13 249 48 211 255 64 0 chrX 95697755 95697802 -66902128 + MIR SINE MIR 70 119 -89 1099 280 103 23 chrX 95697879 95698307 -66901623 + MLT1H LTR MaLR 61 522 -27 518 320 53 5 chrX 95698975 95699138 -66900792 + MIR SINE MIR 34 210 -52 288 77 0 0 chrX 95699138 95699177 -66900753 + (CA)n Simple_repeat Simple_repeat 1 39 0 518 320 53 5 chrX 95699177 95699219 -66900711 + MIR SINE MIR 210 249 -13 547 345 57 4 chrX 95700759 95700988 -66898942 - MIR SINE MIR 0 262 22 1803 217 55 47 chrX 95701323 95701829 -66898101 - MLT2B1 LTR ERVL -10 510 1 479 314 117 16 chrX 95702009 95702197 -66897733 - L3 LINE CR1 -10 1567 1361 184 304 0 18 chrX 95702304 95702360 -66897570 - MIR SINE MIR -138 70 16 3474 190 111 24 chrX 95702384 95703177 -66896753 - MER21B LTR ERV1 -1 862 1 320 277 155 79 chrX 95703203 95703506 -66896424 - L3 LINE CR1 -296 1281 956 531 363 49 29 chrX 95705097 95705447 -66894483 + L1MEd LINE L1 264 620 -5499 11524 228 31 17 chrX 95706178 95707926 -66892004 - L1 LINE L1 -2624 4224 2503 207 0 0 0 chrX 95707926 95707949 -66891981 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 11524 228 31 17 chrX 95707949 95708523 -66891407 - L1 LINE L1 -4345 2503 1939 225 0 0 0 chrX 95708523 95708548 -66891382 + (TG)n Simple_repeat Simple_repeat 2 26 0 11524 228 31 17 chrX 95708548 95710378 -66889552 - L1 LINE L1 -4909 1939 10 1043 302 58 24 chrX 95710528 95711418 -66888512 - L1ME3A LINE L1 -224 5946 5087 2191 106 3 13 chrX 95711418 95711729 -66888201 - AluSq SINE Alu -5 308 1 591 297 0 21 chrX 95711733 95711925 -66888005 + MER5A DNA MER1_type 1 188 -1 1043 302 58 24 chrX 95711925 95711948 -66887982 - L1ME3A LINE L1 -1085 5085 5064 2235 113 3 3 chrX 95711948 95712248 -66887682 - AluSq SINE Alu -13 300 1 1043 302 58 24 chrX 95712248 95712352 -66887578 - L1ME3A LINE L1 -1106 5064 4885 368 198 124 23 chrX 95712454 95712631 -66887299 - L1M4 LINE L1 -3152 2994 2800 208 300 56 81 chrX 95712868 95713028 -66886902 + MER5A DNA MER1_type 34 189 0 2026 127 0 22 chrX 95713463 95713779 -66886151 - AluSq SINE Alu -4 309 1 280 277 76 17 chrX 95714497 95714616 -66885314 + MIR SINE MIR 47 172 -90 24 0 0 0 chrX 95715701 95715725 -66884205 + AT_rich Low_complexity Low_complexity 1 24 0 183 129 0 0 chrX 95715990 95716021 -66883909 + (TAAAAA)n Simple_repeat Simple_repeat 4 34 0 266 132 94 19 chrX 95717009 95717062 -66882868 - L2 LINE L2 0 3272 3216 252 324 0 0 chrX 95717073 95717147 -66882783 + GA-rich Low_complexity Low_complexity 2 75 0 230 235 153 10 chrX 95717147 95717245 -66882685 - L2 LINE L2 -74 3239 3128 30 0 0 0 chrX 95717887 95717917 -66882013 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 95718104 95718129 -66881801 + AT_rich Low_complexity Low_complexity 1 25 0 1711 157 39 11 chrX 95718525 95718811 -66881119 - AluJo SINE Alu -3 309 16 463 274 100 9 chrX 95719022 95719372 -66880558 + L1ME4a LINE L1 5712 6093 -28 27 0 0 0 chrX 95719373 95719400 -66880530 + AT_rich Low_complexity Low_complexity 1 27 0 1416 308 45 26 chrX 95719487 95720069 -66879861 + MLT1E LTR MaLR 1 593 0 4344 161 9 27 chrX 95720244 95722137 -66877793 - L1PA16 LINE L1 -6 6285 4446 2020 72 3 81 chrX 95722152 95722459 -66877471 - AluY SINE Alu -2 309 27 1601 189 0 11 chrX 95722785 95723071 -66876859 - AluJb SINE Alu -29 283 1 186 133 0 0 chrX 95723097 95723127 -66876803 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 17270 34 3 1 chrX 95723150 95726006 -66873924 - L1PA6 LINE L1 -11 6143 3283 8747 202 15 10 chrX 95726126 95728515 -66871415 + L1P5 LINE L1 3191 5591 -563 5609 202 20 31 chrX 95728986 95730231 -66869699 - ERVL LTR ERVL -1326 4438 3208 195 107 0 71 chrX 95730331 95730387 -66869543 + (TCTCC)n Simple_repeat Simple_repeat 4 55 0 232 292 0 45 chrX 95730387 95730476 -66869454 + C-rich Low_complexity Low_complexity 2 86 0 2161 122 18 42 chrX 95730537 95730921 -66869009 + THE1C LTR MaLR 1 375 0 23 33 0 0 chrX 95731356 95731386 -66868544 + AT_rich Low_complexity Low_complexity 1 30 0 6787 203 12 17 chrX 95732463 95734143 -66865787 + L1 LINE L1 3288 4958 -1188 1632 149 54 3 chrX 95734143 95734474 -66865456 + L1MA4A LINE L1 5951 6303 0 21 36 0 0 chrX 95734588 95734616 -66865314 + AT_rich Low_complexity Low_complexity 1 28 0 42 20 0 0 chrX 95734806 95734855 -66865075 + AT_rich Low_complexity Low_complexity 1 49 0 13874 230 18 18 chrX 95734860 95740992 -66858938 + L1PA15 LINE L1 1 6670 -146 2726 72 120 0 chrX 95740998 95741398 -66858532 - LTR7 LTR ERV1 -2 448 1 2252 106 45 13 chrX 95741398 95741776 -66858154 - HERVH LTR ERV1 0 7713 7324 1302 139 19 0 chrX 95741776 95741992 -66857938 - HERVH LTR ERV1 -1894 5819 5600 30862 104 39 22 chrX 95741993 95747061 -66852869 - HERVH LTR ERV1 -2564 5149 1 2770 68 120 0 chrX 95747063 95747463 -66852467 - LTR7 LTR ERV1 -2 448 1 672 208 0 0 chrX 95747467 95747611 -66852319 + L1PA16 LINE L1 6023 6166 0 257 103 44 88 chrX 95747612 95747680 -66852250 - L1MA9 LINE L1 -33 6279 6215 2244 232 19 2 chrX 95748950 95749515 -66850415 + L1PB3 LINE L1 2413 2987 -3159 * 8326 175 14 11 chrX 95749513 95752119 -66847811 + L1PB3 LINE L1 3541 6152 -2 198 71 0 0 chrX 95752123 95752151 -66847779 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 24 32 0 0 chrX 95752579 95752610 -66847320 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chrX 95752634 95752659 -66847271 + AT_rich Low_complexity Low_complexity 1 25 0 339 221 156 16 chrX 95754596 95754718 -66845212 + MIR SINE MIR 91 229 -33 2023 145 34 29 chrX 95755056 95755407 -66844523 - Tigger1 DNA MER2_type 0 2418 2066 4801 198 30 16 chrX 95755407 95756820 -66843110 + L1PA13 LINE L1 1186 2749 -4048 1689 88 4 0 chrX 95756820 95757048 -66842882 - THE1A LTR MaLR 0 355 127 303 93 0 0 chrX 95757048 95757091 -66842839 - THE1A-int LTR MaLR -103 1477 1435 1802 87 0 0 chrX 95757098 95757329 -66842601 + THE1-int LTR MaLR 848 1078 -502 9077 190 51 3 chrX 95757329 95759903 -66840027 + L1PA13 LINE L1 4171 6809 -5 9811 140 40 10 chrX 95759904 95760426 -66839504 - Tigger1 DNA MER2_type -345 2073 1568 2938 6 0 0 chrX 95760426 95760744 -66839186 - AluYb8 SINE Alu 0 318 1 9811 140 40 10 chrX 95760744 95762165 -66837765 - Tigger1 DNA MER2_type -850 1568 1 1137 316 104 39 chrX 95762200 95762836 -66837094 + L2 LINE L2 2456 3167 -146 1604 111 141 0 chrX 95762836 95763098 -66836832 - AluSx SINE Alu -3 299 1 1137 316 104 39 chrX 95763098 95763256 -66836674 + L2 LINE L2 3167 3313 0 402 330 34 50 chrX 95763269 95763508 -66836422 - MIR SINE MIR -24 238 4 1168 332 93 34 chrX 95763534 95764338 -66835592 + L3 LINE CR1 681 1532 -45 242 319 11 33 chrX 95764563 95764654 -66835276 + L2 LINE L2 3176 3264 -8 1039 230 71 66 chrX 95764929 95765337 -66834593 - MLT1C LTR MaLR -53 414 5 545 282 196 9 chrX 95765371 95765591 -66834339 - MIR SINE MIR 0 262 2 663 287 114 17 chrX 95765623 95765860 -66834070 - MIR SINE MIR 0 262 3 203 405 45 0 chrX 95765860 95765962 -66833968 + L2 LINE L2 3165 3271 -1 398 269 39 10 chrX 95766607 95766711 -66833219 - MER91C DNA MER1_type -33 107 1 1734 91 0 0 chrX 95767546 95767776 -66832154 - AluY SINE Alu -8 303 74 244 238 88 0 chrX 95768847 95768927 -66831003 - MIR SINE MIR -76 186 100 200 347 28 0 chrX 95768990 95769062 -66830868 - L3b LINE CR1 -214 1369 1296 395 228 6 32 chrX 95769661 95769819 -66830111 + CT-rich Low_complexity Low_complexity 4 157 0 2145 122 18 42 chrX 95769885 95770269 -66829661 + THE1C LTR MaLR 1 375 0 24 0 0 0 chrX 95775765 95775789 -66824141 + AT_rich Low_complexity Low_complexity 1 24 0 11403 218 45 22 chrX 95776552 95778388 -66821542 - L1MB1 LINE L1 -1 7586 5793 1315 237 10 19 chrX 95778388 95778700 -66821230 - AluJo SINE Alu -3 309 1 11403 218 45 22 chrX 95778700 95781099 -66818831 - L1MB1 LINE L1 -1794 5793 3450 2385 91 0 3 chrX 95781099 95781407 -66818523 - AluSg SINE Alu -3 307 1 11403 218 45 22 chrX 95781407 95781617 -66818313 - L1MB1 LINE L1 -4137 3450 3246 543 113 0 0 chrX 95781617 95781697 -66818233 + MADE1 DNA Mariner 1 80 0 11403 218 45 22 chrX 95781697 95781823 -66818107 - L1MB1 LINE L1 -4341 3246 2901 * 19162 176 50 13 chrX 95781821 95782332 -66817598 - L1MA3 LINE L1 0 7724 7233 2006 153 42 31 chrX 95782332 95782692 -66817238 + THE1B LTR MaLR 1 364 0 11634 85 10 1 chrX 95782692 95784257 -66815673 + THE1B-int LTR MaLR 1 1580 0 2064 129 41 39 chrX 95784257 95784620 -66815310 + THE1B LTR MaLR 1 364 0 19162 176 50 13 chrX 95784620 95787159 -66812771 - L1MA3 LINE L1 -491 7233 4787 201 94 0 0 chrX 95787159 95787191 -66812739 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 19162 176 50 13 chrX 95787191 95791551 -66808379 - L1MA3 LINE L1 -2937 4787 14 916 299 60 13 chrX 95791551 95792003 -66807927 - L1M2 LINE L1 -4327 2406 1934 242 96 0 39 chrX 95792744 95792796 -66807134 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 239 306 14 7 chrX 95792862 95793006 -66806924 - L1M2 LINE L1 -4910 1743 1599 307 299 21 10 chrX 95793101 95793198 -66806732 - L1M2 LINE L1 -5103 1550 1453 541 228 36 46 chrX 95793321 95793540 -66806390 - HAL1 LINE L1 -295 2212 1996 22 0 0 0 chrX 95793571 95793593 -66806337 + AT_rich Low_complexity Low_complexity 1 22 0 946 218 0 0 chrX 95793603 95793791 -66806139 + MER2 DNA MER2_type 22 209 -136 446 0 0 18 chrX 95794021 95794076 -66805854 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2182 86 4 4 chrX 95794078 95794358 -66805572 - AluY SINE Alu -31 280 1 803 313 55 8 chrX 95794394 95794794 -66805136 - L1ME3A LINE L1 -264 5906 5488 25 0 0 0 chrX 95794832 95794857 -66805073 + AT_rich Low_complexity Low_complexity 1 25 0 626 326 66 50 chrX 95794938 95795395 -66804535 - HAL1 LINE L1 -1572 935 472 337 303 71 74 chrX 95795403 95795769 -66804161 - HAL1 LINE L1 -2100 407 43 1780 188 78 42 chrX 95796244 95796653 -66803277 + MSTB1 LTR MaLR 9 432 0 1310 328 84 22 chrX 95797027 95797673 -66802257 + MER115 DNA AcHobo 8 693 0 29 90 0 0 chrX 95798393 95798471 -66801459 + AT_rich Low_complexity Low_complexity 1 78 0 3945 230 88 34 chrX 95799020 95800526 -66799404 + L1MD2 LINE L1 1152 2732 -3808 1213 213 152 20 chrX 95800529 95800872 -66799058 - MSTD LTR MaLR -8 388 1 5769 249 63 36 chrX 95800872 95802449 -66797481 - MSTD-int LTR MaLR 0 1735 117 641 279 106 3 chrX 95802480 95802763 -66797167 + MER50 LTR ERV1 10 321 -413 3370 145 13 27 chrX 95802765 95803539 -66796391 + L1MA6 LINE L1 5280 6020 -280 2467 123 6 0 chrX 95803307 95803672 -66796258 + L1PB1 LINE L1 5783 6149 -2 * 1181 277 45 62 chrX 95803692 95803843 -66796087 + LTR40a LTR ERVL 105 257 -262 2065 104 10 0 chrX 95803843 95804132 -66795798 + AluSc SINE Alu 1 292 -17 354 80 0 0 chrX 95804140 95804190 -66795740 + (TA)n Simple_repeat Simple_repeat 1 50 0 1181 277 45 62 chrX 95804190 95804451 -66795479 + LTR40a LTR ERVL 264 519 0 393 282 88 8 chrX 95804461 95804654 -66795276 - L1MC/D LINE L1 -297 5824 5625 229 96 19 39 chrX 95804903 95804955 -66794975 + (TA)n Simple_repeat Simple_repeat 2 52 0 1103 109 71 0 chrX 95805301 95805484 -66794446 - L1PA13 LINE L1 0 6163 5968 852 255 36 0 chrX 95805484 95805786 -66794144 + L1MD2 LINE L1 3377 3689 -2851 902 211 33 9 chrX 95805786 95805999 -66793931 + L1MA9 LINE L1 6035 6252 -60 1777 168 9 6 chrX 95806000 95806315 -66793615 + L1PA16 LINE L1 5848 6163 -3 2120 261 33 62 chrX 95806487 95807430 -66792500 + L1MD2 LINE L1 3795 4710 -1830 30 0 0 0 chrX 95807431 95807461 -66792469 + AT_rich Low_complexity Low_complexity 1 30 0 2759 130 2 2 chrX 95807467 95807890 -66792040 - L1PA15 LINE L1 -10 6155 5733 1980 186 84 114 chrX 95807890 95808650 -66791280 + LTR1B LTR ERV1 1 737 -89 2608 269 69 6 chrX 95808822 95809834 -66790096 + L1MD2 LINE L1 4719 5794 -746 297 0 0 0 chrX 95809868 95809891 -66790039 + (TG)n Simple_repeat Simple_repeat 1 56 0 297 0 0 0 chrX 95809891 95809924 -66790006 + (TG)n Simple_repeat Simple_repeat 2 34 0 1507 216 31 50 chrX 95809970 95810354 -66789576 - MLT2D LTR ERVL -37 377 1 3628 220 36 27 chrX 95810356 95811288 -66788642 + L1MD2 LINE L1 5810 6750 -3 242 160 20 0 chrX 95811321 95811371 -66788559 + L1MB7 LINE L1 6132 6182 -2 1415 72 5 10 chrX 95811589 95811796 -66788134 + L1MA2 LINE L1 6099 6304 0 25 31 0 0 chrX 95812860 95812892 -66787038 + AT_rich Low_complexity Low_complexity 1 32 0 1477 218 48 14 chrX 95812920 95813273 -66786657 + MLT1A1 LTR MaLR 1 365 0 323 289 80 80 chrX 95813334 95813683 -66786247 - L1ME4a LINE L1 -78 6043 5695 25 0 0 0 chrX 95813702 95813727 -66786203 + AT_rich Low_complexity Low_complexity 1 25 0 1211 287 80 44 chrX 95813727 95814356 -66785574 - MLT1E3 LTR MaLR -2 622 1 387 268 193 33 chrX 95814565 95814778 -66785152 + MIR SINE MIR 13 259 -3 279 111 0 0 chrX 95815422 95815467 -66784463 + L1PB1 LINE L1 6106 6150 -1 266 293 72 23 chrX 95815749 95816012 -66783918 - HAL1b LINE L1 -22 1326 1051 21 36 0 0 chrX 95816045 95816073 -66783857 + AT_rich Low_complexity Low_complexity 1 28 0 248 258 204 0 chrX 95816132 95816264 -66783666 - HAL1b LINE L1 -452 896 738 301 275 65 29 chrX 95816274 95816412 -66783518 + L1M4 LINE L1 4514 4656 -1490 816 97 14 62 chrX 95816764 95816908 -66783022 - L1MB7 LINE L1 -20 6164 6028 43806 40 2 1 chrX 95816910 95823051 -66776879 + L1PA4 LINE L1 21 6166 0 2665 172 54 11 chrX 95823006 95823576 -66776354 - L1MB7 LINE L1 -141 6043 5485 * 1238 241 92 34 chrX 95823571 95824007 -66775923 - L1MB7 LINE L1 -897 5249 4789 * 824 335 53 43 chrX 95824243 95824774 -66775156 + L1PB4 LINE L1 727 1262 -5587 * 910 268 12 27 chrX 95824767 95825095 -66774835 + L1PB4 LINE L1 1464 1786 -5063 7461 184 19 9 chrX 95825095 95827479 -66772451 - L1PB3 LINE L1 0 6154 3746 3345 243 21 29 chrX 95827475 95828968 -66770962 + L1PB4 LINE L1 1771 3251 -3597 * 7618 185 38 5 chrX 95828966 95831415 -66768515 + L1PB4 LINE L1 4342 6856 -2 3806 241 34 47 chrX 95831426 95832626 -66767304 - L1M4 LINE L1 -5350 1192 8 287 254 28 39 chrX 95832768 95832949 -66766981 + L1MC/D LINE L1 5182 5360 -786 368 297 57 9 chrX 95833457 95833624 -66766306 + L1MC/D LINE L1 5378 5553 -569 3792 128 27 17 chrX 95833642 95834049 -66765881 - L1MA1 LINE L1 0 6302 5900 213 39 0 0 chrX 95834049 95834075 -66765855 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1778 133 0 60 chrX 95834075 95834248 -66765682 - AluSx SINE Alu -30 282 133 279 54 0 0 chrX 95834248 95834285 -66765645 + (TG)n Simple_repeat Simple_repeat 2 38 0 1778 133 0 60 chrX 95834285 95834411 -66765519 - AluSx SINE Alu -179 133 1 3792 128 27 17 chrX 95834411 95834634 -66765296 - L1MA1 LINE L1 -401 5901 5665 6544 187 9 9 chrX 95834634 95834876 -66765054 - L1 LINE L1 -1564 4582 4341 1994 170 89 5 chrX 95834876 95835271 -66764659 - MSTA LTR MaLR 0 428 1 8535 182 24 15 chrX 95835271 95836907 -66763023 - MSTA-int LTR MaLR 0 1651 1 2040 143 97 8 chrX 95836907 95837300 -66762630 - MSTA LTR MaLR 0 428 1 6544 187 9 9 chrX 95837300 95838386 -66761544 - L1 LINE L1 -1802 4344 3252 * 7472 170 19 4 chrX 95838375 95840847 -66759083 - L1PB1 LINE L1 0 6867 4355 9527 150 52 4 chrX 95840852 95843458 -66756472 - L1PB1 LINE L1 -2819 4043 1311 586 131 353 0 chrX 95843460 95843582 -66756348 - L1PB1 LINE L1 -5704 1159 995 * 1246 131 0 0 chrX 95843578 95843776 -66756154 - L1PB1 LINE L1 -6665 198 1 2906 204 37 10 chrX 95843782 95844482 -66755448 - L1 LINE L1 -2871 3991 3273 226 344 0 0 chrX 95844481 95844571 -66755359 + L1ME LINE L1 5537 5626 -544 * 774 252 5 36 chrX 95844849 95845071 -66754859 + AluJo SINE Alu 1 215 -97 291 277 12 36 chrX 95845072 95845155 -66754775 + MLT2D LTR ERVL 273 353 -61 216 97 0 0 chrX 95845168 95845199 -66754731 + (TC)n Simple_repeat Simple_repeat 1 31 0 225 0 0 0 chrX 95845290 95845315 -66754615 + (TC)n Simple_repeat Simple_repeat 2 26 0 294 148 0 0 chrX 95845320 95845374 -66754556 - MLT2A1 LTR ERVL 0 444 391 189 195 0 0 chrX 95845374 95845415 -66754515 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 331 220 25 10 chrX 95845415 95845514 -66754416 + L1MC4 LINE L1 2006 6983 -1339 2914 82 5 20 chrX 95845523 95845558 -66754372 - MLT2A1 LTR ERVL -45 399 365 315 0 0 0 chrX 95845558 95845593 -66754337 + (CA)n Simple_repeat Simple_repeat 2 36 0 2914 82 5 20 chrX 95845593 95845961 -66753969 - MLT2A1 LTR ERVL -79 365 2 330 75 0 188 chrX 95845965 95845984 -66753946 + MLT2B3 LTR ERVL 456 477 -77 207 0 0 0 chrX 95845984 95846007 -66753923 + (GA)n Simple_repeat Simple_repeat 2 24 0 330 75 0 188 chrX 95846007 95846067 -66753863 + MLT2B3 LTR ERVL 477 554 0 273 89 0 0 chrX 95846664 95846709 -66753221 + (TG)n Simple_repeat Simple_repeat 2 46 0 626 335 27 15 chrX 95846805 95847065 -66752865 - MLT1J LTR MaLR -248 263 1 252 0 0 0 chrX 95848075 95848103 -66751827 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 405 0 0 0 chrX 95848102 95848147 -66751783 + (TG)n Simple_repeat Simple_repeat 2 46 0 14483 194 41 13 chrX 95848629 95848973 -66750957 - L1PB1 LINE L1 -17 6850 6517 198 0 0 0 chrX 95848973 95848995 -66750935 + (TA)n Simple_repeat Simple_repeat 1 22 0 14483 194 41 13 chrX 95848995 95854319 -66745611 - L1PB1 LINE L1 -350 6517 872 684 266 5 0 chrX 95854295 95854483 -66745447 - L1PB1 LINE L1 -6669 194 6 * 38 85 0 0 chrX 95854811 95854905 -66745025 + AT_rich Low_complexity Low_complexity 1 94 0 18611 184 37 16 chrX 95855468 95863011 -66736919 + L1MA2 LINE L1 13 7723 0 1593 201 7 24 chrX 95864556 95864854 -66735076 + AluJb SINE Alu 3 295 -17 2386 71 10 0 chrX 95864991 95865288 -66734642 + AluSg SINE Alu 1 300 -10 402 322 14 28 chrX 95865627 95865770 -66734160 - MIR SINE MIR -108 154 14 1751 230 81 81 chrX 95867543 95868444 -66731486 + L1MC5 LINE L1 6625 7470 -491 251 28 28 0 chrX 95868455 95868491 -66731439 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 9802 24 0 14 chrX 95868523 95870473 -66729457 - L1PA3 LINE L1 -3 6152 4222 412 311 39 39 chrX 95870631 95870811 -66729119 + L1ME3A LINE L1 5976 6155 -15 878 301 101 14 chrX 95870981 95871337 -66728593 - LTR16A LTR ERVL -7 443 57 182 229 0 42 chrX 95871493 95871541 -66728389 - MIR SINE MIR -113 149 104 457 352 77 0 chrX 95871578 95871774 -66728156 - MIR SINE MIR -48 214 4 309 232 110 97 chrX 95872764 95873001 -66726929 + L2 LINE L2 3074 3313 0 2427 70 0 3 chrX 95874609 95874909 -66725021 - AluSq SINE Alu -14 299 1 315 122 0 0 chrX 95876045 95876094 -66723836 + (CA)n Simple_repeat Simple_repeat 2 50 0 200 268 14 0 chrX 95876439 95876510 -66723420 + (ATG)n Simple_repeat Simple_repeat 3 74 0 29 47 0 0 chrX 95878056 95878099 -66721831 + AT_rich Low_complexity Low_complexity 1 43 0 273 289 0 0 chrX 95880436 95880512 -66719418 + MIR SINE MIR 187 262 0 28 0 0 0 chrX 95880911 95880939 -66718991 + AT_rich Low_complexity Low_complexity 1 28 0 451 286 9 0 chrX 95881966 95882071 -66717859 - L2 LINE L2 -9 3304 3199 24 0 0 0 chrX 95882131 95882155 -66717775 + AT_rich Low_complexity Low_complexity 1 24 0 268 298 24 0 chrX 95885972 95886056 -66713874 + MIR SINE MIR 61 146 -62 194 272 61 35 chrX 95887614 95887728 -66712202 + MIR SINE MIR 109 225 -37 277 307 139 15 chrX 95887793 95887930 -66712000 - MIR SINE MIR -78 184 31 216 171 0 0 chrX 95888292 95888327 -66711603 + (CA)n Simple_repeat Simple_repeat 2 36 0 674 97 0 0 chrX 95888657 95888760 -66711170 + L1MA5 LINE L1 6196 6298 -2 221 234 21 0 chrX 95890889 95890936 -66708994 + GA-rich Low_complexity Low_complexity 3 50 0 195 162 0 0 chrX 95891103 95891140 -66708790 + CT-rich Low_complexity Low_complexity 6 42 0 1939 68 32 0 chrX 95891845 95892038 -66707892 - AluY SINE Alu 0 311 117 489 34 0 0 chrX 95892038 95892097 -66707833 + (TG)n Simple_repeat Simple_repeat 2 60 0 1939 68 32 0 chrX 95892097 95892183 -66707747 - AluY SINE Alu -194 117 35 22 0 0 0 chrX 95892343 95892365 -66707565 + AT_rich Low_complexity Low_complexity 1 22 0 2143 148 62 30 chrX 95892707 95893223 -66706707 - MLT2A2 LTR ERVL 0 554 1 221 245 0 0 chrX 95893908 95893961 -66705969 + (ATG)n Simple_repeat Simple_repeat 1 53 0 2023 266 63 20 chrX 95895261 95895946 -66703984 + L1MEc LINE L1 63 776 -5620 1263 182 50 17 chrX 95895948 95896005 -66703925 - MER45B DNA AcHobo -546 1035 981 1497 24 9 76 chrX 95896005 95896216 -66703714 + L1PA4 LINE L1 5959 6155 0 1263 182 50 17 chrX 95896216 95896455 -66703475 - MER45B DNA AcHobo -600 981 729 775 334 63 34 chrX 95896571 95896951 -66702979 - MER45C DNA AcHobo -177 776 386 378 330 96 62 chrX 95898330 95898748 -66701182 + L2 LINE L2 2839 3270 -43 538 281 75 19 chrX 95899562 95899722 -66700208 + MIR SINE MIR 6 174 -88 2409 135 6 3 chrX 95899732 95900095 -66699835 + THE1B LTR MaLR 1 364 0 956 100 20 0 chrX 95900097 95900247 -66699683 + THE1B-int LTR MaLR 3 155 -1496 * 7001 140 10 0 chrX 95900233 95901277 -66698653 + THE1B-int LTR MaLR 523 1576 -4 2281 160 6 3 chrX 95901281 95901644 -66698286 + THE1B LTR MaLR 1 364 0 325 253 0 12 chrX 95901644 95901727 -66698203 + MIR SINE MIR 177 258 -4 591 225 23 8 chrX 95902246 95902375 -66697555 + MIR3 SINE MIR 68 198 -10 455 189 21 11 chrX 95903967 95904062 -66695868 + MER4A LTR ERV1 1 96 -568 1655 143 159 73 chrX 95904064 95904436 -66695494 + MER4A LTR ERV1 261 664 0 7038 119 71 56 chrX 95904438 95904887 -66695043 + MER4A-int LTR ERV1 1 442 -4573 7730 110 14 0 chrX 95904887 95906841 -66693089 + L1PA8 LINE L1 4200 6172 0 7038 119 71 56 chrX 95906841 95908534 -66691396 + MER4A-int LTR ERV1 442 1638 -3377 1174 197 75 0 chrX 95908542 95908781 -66691149 - LTR8 LTR ERV1 -434 257 1 3949 140 82 20 chrX 95908781 95909667 -66690263 + MER4A-int LTR ERV1 2737 3677 -2921 15155 109 51 26 chrX 95909670 95912207 -66687723 + MER4A-int LTR ERV1 3837 6437 -161 524 212 38 33 chrX 95912981 95913165 -66686765 - MER41B LTR ERV1 -205 430 112 367 301 46 80 chrX 95913599 95913861 -66686069 + L2 LINE L2 2552 2804 -510 968 293 69 57 chrX 95913938 95914528 -66685402 - L2 LINE L2 -4 3309 2709 1577 241 52 8 chrX 95914552 95914933 -66684997 + L1M1 LINE L1 14 411 -7154 1347 255 57 17 chrX 95914943 95915578 -66684352 - L1M4 LINE L1 -2607 3539 2880 3081 185 25 35 chrX 95915654 95915833 -66684097 - L1PB4 LINE L1 -7 6149 5970 2626 28 6 25 chrX 95915833 95916150 -66683780 - AluY SINE Alu 0 311 1 3081 185 25 35 chrX 95916150 95916652 -66683278 - L1PB4 LINE L1 -186 5970 5475 25 31 0 0 chrX 95916652 95916684 -66683246 + AT_rich Low_complexity Low_complexity 1 32 0 8256 204 25 2 chrX 95917341 95920116 -66679814 - L1PA13 LINE L1 -13 6150 3326 348 313 7 20 chrX 95920118 95920268 -66679662 - L1 LINE L1 -2884 3262 3115 31 26 0 0 chrX 95920272 95920310 -66679620 + AT_rich Low_complexity Low_complexity 1 38 0 1297 39 0 0 chrX 95920355 95920509 -66679421 - L1PA3 LINE L1 -3 6152 5999 5804 103 24 34 chrX 95920509 95921277 -66678653 + L1P LINE L1 2776 3533 -2613 1079 117 0 0 chrX 95921277 95921440 -66678490 - L1MA1 LINE L1 -1 6301 6139 5804 103 24 34 chrX 95921440 95921670 -66678260 + L1P LINE L1 3533 3764 -2382 1775 90 8 4 chrX 95921697 95921953 -66677977 + L1PB1 LINE L1 5895 6151 0 4406 116 24 6 chrX 95922160 95922860 -66677070 - L1MA1 LINE L1 -162 6140 5428 13600 182 34 11 chrX 95922874 95927152 -66672778 - L1MA1 LINE L1 0 7721 3361 3725 285 22 7 chrX 95927170 95928460 -66671470 - L1PA12 LINE L1 -3114 4470 3161 1976 28 36 0 chrX 95928460 95928707 -66671223 - L1PA5 LINE L1 0 6154 5899 3168 35 3 0 chrX 95928707 95929082 -66670848 + L1PA5 LINE L1 5543 5918 -236 2588 253 29 17 chrX 95929077 95930055 -66669875 - L1PA12 LINE L1 -4407 3177 2179 * 321 105 19 15 chrX 95930479 95930557 -66669373 + L1M1 LINE L1 2345 2809 -4740 512 372 48 10 chrX 95930986 95931384 -66668546 - L1PA12 LINE L1 -7168 413 1 1084 201 39 0 chrX 95931384 95931755 -66668175 - L1P5 LINE L1 -672 5484 5100 6346 239 27 11 chrX 95931777 95932640 -66667290 - L1MEc LINE L1 -1412 5529 4681 2061 150 126 5 chrX 95932640 95933020 -66666910 - MSTA LTR MaLR 0 428 3 6346 239 27 11 chrX 95933020 95933962 -66665968 - L1MEc LINE L1 -2260 4681 3696 4538 245 71 10 chrX 95933967 95935635 -66664295 - L1PBb LINE L1 -3699 2504 690 270 0 0 0 chrX 95936152 95936182 -66663748 + (CA)n Simple_repeat Simple_repeat 1 30 0 840 240 36 14 chrX 95936817 95937096 -66662834 - L1MEc LINE L1 -3250 3691 3407 1384 175 19 0 chrX 95937097 95937366 -66662564 + L1PA10 LINE L1 3094 3367 -2779 3758 111 29 6 chrX 95937381 95937929 -66662001 + LTR9B LTR ERV1 1 561 -83 11025 139 39 4 chrX 95937945 95940663 -66659267 + L1PA10 LINE L1 3369 6177 0 1678 303 74 46 chrX 95940663 95943801 -66656129 - L1MEc LINE L1 -3524 3417 37 1937 312 47 22 chrX 95943821 95944596 -66655334 - L2 LINE L2 -599 2715 1922 638 311 145 16 chrX 95944596 95944746 -66655184 - L2 LINE L2 -1723 1591 1462 198 71 0 0 chrX 95944746 95944774 -66655156 + (TG)n Simple_repeat Simple_repeat 1 28 0 638 311 145 16 chrX 95944774 95944941 -66654989 - L2 LINE L2 -1852 1462 1233 928 284 85 39 chrX 95945050 95945487 -66654443 + MLT1H LTR MaLR 73 625 -1 295 347 45 63 chrX 95945586 95945808 -66654122 + L2 LINE L2 3015 3232 -40 13173 187 26 11 chrX 95945879 95946101 -66653829 + L1M1 LINE L1 15 232 -7333 396 0 0 0 chrX 95946101 95946145 -66653785 + (CA)n Simple_repeat Simple_repeat 1 44 0 13173 187 26 11 chrX 95946145 95949048 -66650882 + L1M1 LINE L1 232 4922 -2643 22 0 0 0 chrX 95949764 95949786 -66650144 + AT_rich Low_complexity Low_complexity 1 22 0 339 25 0 0 chrX 95949841 95949881 -66650049 + (TG)n Simple_repeat Simple_repeat 1 40 0 337 234 71 7 chrX 95949911 95950052 -66649878 + L1ME4a LINE L1 5971 6120 -1 1013 212 27 117 chrX 95950360 95950761 -66649169 + MLT1A1 LTR MaLR 1 365 0 662 211 92 133 chrX 95950847 95951184 -66648746 - MER5C DNA MER1_type -1 323 1 361 309 34 63 chrX 95951445 95951652 -66648278 - L1ME3A LINE L1 -8 6162 5962 542 250 201 30 chrX 95951693 95952165 -66647765 - L1MC5 LINE L1 -462 7499 6947 251 297 117 62 chrX 95952841 95952986 -66646944 + L3b LINE CR1 1421 1573 -10 2061 210 26 5 chrX 95953070 95953485 -66646445 + MSTB LTR MaLR 3 426 0 4966 102 54 37 chrX 95953513 95954854 -66645076 - pTR5 LTR ERV1 0 2438 743 724 319 87 35 chrX 95955367 95955802 -66644128 + L3 LINE CR1 1041 1498 -79 22 35 0 0 chrX 95956154 95956183 -66643747 + AT_rich Low_complexity Low_complexity 1 29 0 368 287 37 37 chrX 95956248 95956436 -66643494 + L1MD1 LINE L1 6043 6230 -12 407 238 9 9 chrX 95956437 95956542 -66643388 + L1MD1 LINE L1 6128 6232 -10 530 203 8 8 chrX 95956624 95956747 -66643183 - Charlie1 DNA MER1_type -22 2739 2617 638 141 102 0 chrX 95957092 95957220 -66642710 + L1MB1 LINE L1 6028 6168 0 1269 237 128 5 chrX 95957546 95957977 -66641953 - Charlie1 DNA MER1_type -164 2597 2114 25 31 0 0 chrX 95958086 95958118 -66641812 + AT_rich Low_complexity Low_complexity 1 32 0 1493 213 65 14 chrX 95958240 95958593 -66641337 - MLT1C LTR MaLR -33 434 64 1581 213 87 8 chrX 95958648 95959015 -66640915 - MLT1C-int LTR MaLR -6 1365 970 3009 214 47 3 chrX 95959036 95959715 -66640215 - MLT1C-int LTR MaLR -660 711 3 890 220 34 34 chrX 95959722 95959933 -66639997 - L1ME3A LINE L1 -339 5827 5614 2215 243 21 32 chrX 95959933 95960146 -66639784 + MLT2B3 LTR ERVL 1 215 -339 294 29 0 0 chrX 95960146 95960181 -66639749 + (TC)n Simple_repeat Simple_repeat 1 35 0 2215 243 21 32 chrX 95960181 95960527 -66639403 + MLT2B3 LTR ERVL 215 554 0 890 220 34 34 chrX 95960527 95960551 -66639379 - L1ME3A LINE L1 -551 5615 5592 * 5844 194 19 2 chrX 95960547 95962011 -66637919 - L1MC1 LINE L1 0 6333 4843 1523 193 39 75 chrX 95962023 95962113 -66637817 + L1M4 LINE L1 4365 4457 -1689 411 92 0 0 chrX 95962113 95962178 -66637752 + (TA)n Simple_repeat Simple_repeat 1 65 0 264 100 0 0 chrX 95962185 95962225 -66637705 + (TG)n Simple_repeat Simple_repeat 2 41 0 1523 193 39 75 chrX 95962225 95962634 -66637296 + L1M4 LINE L1 4463 4854 -1292 463 226 89 7 chrX 95962615 95962761 -66637169 - L1ME3A LINE L1 -550 5614 5457 * 186 43 0 0 chrX 95965104 95965127 -66634803 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 254 86 0 0 chrX 95965504 95965539 -66634391 + L1P4 LINE L1 5702 5736 -425 1000 219 8 68 chrX 95965547 95965784 -66634146 - MER52A LTR ERV1 -158 1597 1375 2785 86 39 12 chrX 95965784 95966076 -66633854 + L1PA13 LINE L1 5740 6048 -115 6091 196 194 29 chrX 95966076 95967582 -66632348 - MER52A LTR ERV1 0 1755 1 2785 86 39 12 chrX 95967582 95967698 -66632232 + L1PA13 LINE L1 6048 6159 -4 185 237 51 68 chrX 95968405 95968464 -66631466 + L3b LINE CR1 1421 1478 -105 1704 195 32 0 chrX 95968637 95968980 -66630950 - L1MB7 LINE L1 -171 6013 5660 231 170 19 0 chrX 95968988 95969041 -66630889 - LTR66 LTR ERVL -163 447 394 270 248 7 13 chrX 95969042 95969191 -66630739 + (TA)n Simple_repeat Simple_repeat 1 148 0 818 197 6 18 chrX 95969202 95969376 -66630554 - L1MB7 LINE L1 -530 5639 5471 237 33 0 0 chrX 95969376 95969406 -66630524 + (TG)n Simple_repeat Simple_repeat 1 30 0 818 197 6 18 chrX 95969406 95969420 -66630510 - L1MB7 LINE L1 -698 5471 5458 * 1736 278 45 12 chrX 95969419 95969567 -66630363 - L1M4 LINE L1 -2727 3419 3277 201 39 0 0 chrX 95969567 95969593 -66630337 + (TC)n Simple_repeat Simple_repeat 1 26 0 1736 278 45 12 chrX 95969593 95969845 -66630085 - L1M4 LINE L1 -2869 3277 3035 2299 96 0 10 chrX 95969845 95970147 -66629783 + AluSc SINE Alu 1 299 -10 252 0 0 0 chrX 95970147 95970175 -66629755 + (TA)n Simple_repeat Simple_repeat 2 29 0 1736 278 45 12 chrX 95970175 95970629 -66629301 - L1M4 LINE L1 -3110 3036 2534 13349 186 41 7 chrX 95970641 95977215 -66622715 - L1MA3 LINE L1 0 7724 925 * 18443 185 35 8 chrX 95977211 95981500 -66618430 - L1 LINE L1 -3124 4441 36 1172 286 60 65 chrX 95981469 95982070 -66617860 - L1MDa LINE L1 -5912 628 31 * 336 143 0 0 chrX 95982960 95983016 -66616914 + (CATA)n Simple_repeat Simple_repeat 3 58 0 788 350 0 12 chrX 95983595 95983838 -66616092 - MIR SINE MIR 0 262 23 6841 24 0 0 chrX 95984021 95984811 -66615119 - L1PA3 LINE L1 -3 6152 5363 11410 25 0 0 chrX 95984811 95986156 -66613774 + L1PA3 LINE L1 4012 5356 -790 309 365 94 10 chrX 95986177 95986380 -66613550 + L3 LINE CR1 542 761 -816 24 32 0 0 chrX 95986385 95986416 -66613514 + AT_rich Low_complexity Low_complexity 1 31 0 935 141 38 38 chrX 95986580 95986764 -66613166 - THE1C LTR MaLR 0 375 192 371 343 96 6 chrX 95987040 95987206 -66612724 + L3 LINE CR1 1318 1498 -79 2073 167 8 3 chrX 95987267 95987627 -66612303 - L1PB4 LINE L1 -12 6144 5783 187 79 53 0 chrX 95987687 95987725 -66612205 + (CTATA)n Simple_repeat Simple_repeat 2 41 0 * 188 159 48 16 chrX 95987720 95987783 -66612147 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 2151 152 13 16 chrX 95987800 95988175 -66611755 + THE1C LTR MaLR 1 374 -1 9617 120 37 38 chrX 95988176 95989749 -66610181 + THE1C-int LTR MaLR 1 1571 -9 2360 134 11 8 chrX 95989759 95990131 -66609799 + THE1C LTR MaLR 3 375 0 248 91 23 0 chrX 95990143 95990187 -66609743 - MADE1 DNA Mariner 0 80 36 234 59 35 71 chrX 95990188 95990273 -66609657 + (TA)n Simple_repeat Simple_repeat 2 83 0 23 0 0 0 chrX 95990532 95990555 -66609375 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chrX 95991355 95991378 -66608552 + (CA)n Simple_repeat Simple_repeat 2 24 0 2269 166 5 12 chrX 95991858 95992269 -66607661 + L1MB2 LINE L1 5734 6141 -30 37 39 0 0 chrX 95992307 95992358 -66607572 + AT_rich Low_complexity Low_complexity 1 51 0 378 342 157 26 chrX 95992364 95992893 -66607037 + L2 LINE L2 2374 2971 -343 1568 261 105 40 chrX 95992987 95993823 -66606107 - L1ME3A LINE L1 -16 6957 6067 369 168 18 11 chrX 95993820 95993911 -66606019 + L1MB2 LINE L1 6079 6183 0 * 26 0 0 0 chrX 95993915 95993941 -66605989 + AT_rich Low_complexity Low_complexity 1 26 0 181 375 99 0 chrX 95993941 95994093 -66605837 + L2 LINE L2 2349 2515 -799 2320 91 0 23 chrX 95994186 95994493 -66605437 - AluSx SINE Alu -12 300 1 544 299 66 44 chrX 95994493 95995011 -66604919 - L1ME3A LINE L1 -955 6002 5474 5870 261 45 27 chrX 95995210 95998725 -66601205 - L1PA16 LINE L1 -2812 3985 4 4516 197 15 4 chrX 95998720 96000180 -66599750 + L1PA16 LINE L1 3989 6809 -8 * 277 288 103 0 chrX 96000188 96000334 -66599596 - L1ME3A LINE L1 -2228 4729 4569 448 281 115 22 chrX 96000386 96000802 -66599128 - L1ME3A LINE L1 -2471 4486 4032 517 301 7 62 chrX 96000959 96001231 -66598699 - MLT1H LTR MaLR -240 309 53 405 260 62 31 chrX 96001288 96001611 -66598319 - L1ME3A LINE L1 -2925 4032 3700 4323 211 30 1 chrX 96001672 96002515 -66597415 - ERVL LTR ERVL -3553 2211 1345 1988 288 31 6 chrX 96002515 96003368 -66596562 - L1ME3A LINE L1 -4555 2404 1537 1051 241 37 64 chrX 96003347 96003721 -66596209 - L1ME3A LINE L1 -5567 1292 929 * 195 42 0 0 chrX 96004310 96004334 -66595596 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 315 316 71 31 chrX 96004369 96004565 -66595365 - L1ME3A LINE L1 -6643 216 13 275 335 122 0 chrX 96004640 96004837 -66595093 - L1MEc LINE L1 -4586 1810 1590 395 327 60 23 chrX 96004906 96005123 -66594807 - L1MEc LINE L1 -4924 1472 1248 226 244 47 23 chrX 96005299 96005385 -66594545 - L1MEc LINE L1 -5147 1071 984 21 0 0 0 chrX 96005434 96005455 -66594475 + AT_rich Low_complexity Low_complexity 1 21 0 348 328 74 18 chrX 96005455 96005684 -66594246 - L1MEc LINE L1 -5407 989 748 241 277 223 27 chrX 96006394 96006506 -66593424 + L2 LINE L2 3137 3270 -2 30 0 0 0 chrX 96006565 96006595 -66593335 + AT_rich Low_complexity Low_complexity 1 30 0 1343 189 96 7 chrX 96007614 96007895 -66592035 + AluJb SINE Alu 1 306 -6 24 0 0 0 chrX 96007921 96007945 -66591985 + AT_rich Low_complexity Low_complexity 1 24 0 866 289 28 55 chrX 96008446 96008844 -66591086 + L1MDa LINE L1 57 443 -6097 305 361 103 68 chrX 96008914 96009460 -66590470 + L1MDa LINE L1 387 951 -5589 497 176 20 33 chrX 96009694 96009847 -66590083 + (TA)n Simple_repeat Simple_repeat 2 152 0 262 289 0 0 chrX 96009852 96009942 -66589988 - L1MC4 LINE L1 -1339 6703 6614 315 213 0 0 chrX 96009942 96010017 -66589913 + (TA)n Simple_repeat Simple_repeat 2 76 0 270 231 0 44 chrX 96010025 96010116 -66589814 - L1MC4 LINE L1 -1342 6700 6614 * 325 217 0 22 chrX 96010036 96010128 -66589802 + L1MC4 LINE L1 6614 6703 -1339 285 98 0 0 chrX 96010359 96010400 -66589530 + (CA)n Simple_repeat Simple_repeat 2 42 0 903 215 57 27 chrX 96010422 96010720 -66589210 + L1MDa LINE L1 1002 1308 -5235 302 312 69 58 chrX 96010728 96010901 -66589029 + L1MDa LINE L1 151 325 -6218 240 160 0 20 chrX 96011420 96011470 -66588460 + L1MDa LINE L1 1462 1510 -5032 426 212 26 18 chrX 96011595 96011708 -66588222 + L1MDb LINE L1 845 958 -5451 1805 286 42 38 chrX 96012726 96013558 -66586372 + L1PB4 LINE L1 1545 2372 -4726 2223 152 72 5 chrX 96013558 96013959 -66585971 + MSTA LTR MaLR 1 428 0 8558 181 26 4 chrX 96013959 96015575 -66584355 + MSTA-int LTR MaLR 1 1651 0 1993 159 117 3 chrX 96015575 96015959 -66583971 + MSTA LTR MaLR 1 428 0 1805 286 42 38 chrX 96015959 96016039 -66583891 + L1PB4 LINE L1 2371 2503 -4595 1720 168 136 34 chrX 96016042 96016424 -66583506 - MSTA LTR MaLR -7 421 1 1314 288 60 26 chrX 96016427 96017122 -66582808 + L1M1 LINE L1 2558 3276 -4289 884 229 35 41 chrX 96017139 96017454 -66582476 + L1M1 LINE L1 3344 3656 -3909 7132 199 69 11 chrX 96017454 96018910 -66581020 - ERVL LTR ERVL -875 4889 3350 4643 145 17 20 chrX 96018918 96019752 -66580178 - L1PA16 LINE L1 0 6166 5334 * 7180 226 38 23 chrX 96019738 96019893 -66580037 + L1PB4 LINE L1 2706 2857 -4310 180 0 0 0 chrX 96019893 96019913 -66580017 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 7180 226 38 23 chrX 96019913 96020304 -66579626 + L1PB4 LINE L1 2857 3240 -3927 2147 107 7 13 chrX 96020304 96020602 -66579328 + AluY SINE Alu 1 296 -15 7180 226 38 23 chrX 96020602 96020652 -66579278 + L1PB4 LINE L1 3240 3288 -3879 1267 243 10 33 chrX 96020652 96020953 -66578977 + AluJo SINE Alu 1 294 -8 7180 226 38 23 chrX 96020953 96022722 -66577208 + L1PB4 LINE L1 3288 5059 -2108 2590 172 37 14 chrX 96022735 96023397 -66576533 + L1PB4 LINE L1 6150 6825 -352 304 262 0 19 chrX 96023468 96023571 -66576359 + L1MC1 LINE L1 4755 4855 -1291 1274 244 23 20 chrX 96023571 96023916 -66576014 + L1PB4 LINE L1 6829 7174 -3 495 279 25 20 chrX 96023917 96024121 -66575809 + L1MD1 LINE L1 3386 3590 -2556 970 294 18 21 chrX 96024122 96024448 -66575482 - LTR53 LTR ERVL 0 519 195 3956 238 67 25 chrX 96024636 96027170 -66572760 + L1MD1 LINE L1 3587 6242 0 464 176 0 0 chrX 96028659 96028744 -66571186 - L1MC1 LINE L1 -866 5778 5694 4846 189 62 20 chrX 96028753 96028862 -66571068 + L1MC1 LINE L1 5768 5871 -960 1353 206 21 63 chrX 96028862 96029241 -66570689 - MLT1A1 LTR MaLR 0 365 3 4846 189 62 20 chrX 96029241 96029652 -66570278 + L1MC1 LINE L1 5871 6263 -568 4170 105 46 0 chrX 96029652 96030259 -66569671 + MER41B LTR ERV1 1 635 0 4846 189 62 20 chrX 96030259 96030752 -66569178 + L1MC1 LINE L1 6263 6825 -6 195 69 0 0 chrX 96030756 96030785 -66569145 + (TAAAAA)n Simple_repeat Simple_repeat 1 29 0 2726 193 9 6 chrX 96030882 96031410 -66568520 + L1PB4 LINE L1 5615 6144 -12 551 250 0 0 chrX 96031527 96031639 -66568291 - FLAM_A SINE Alu -21 121 10 563 257 94 21 chrX 96031694 96031982 -66567948 - L1M4 LINE L1 -1340 5304 4996 * 4471 229 108 41 chrX 96031981 96033806 -66566124 - L1M4 LINE L1 -3898 2748 802 330 321 46 32 chrX 96034086 96034304 -66565626 - L1M4 LINE L1 -6318 224 4 330 342 115 58 chrX 96036731 96036987 -66562943 + MLT1K LTR MaLR 8 248 -340 2056 108 0 33 chrX 96036987 96037294 -66562636 - AluSx SINE Alu -15 297 1 330 342 115 58 chrX 96037294 96037516 -66562414 + MLT1K LTR MaLR 248 513 -75 22 0 0 0 chrX 96037520 96037542 -66562388 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chrX 96038095 96038128 -66561802 + AT_rich Low_complexity Low_complexity 1 33 0 500 356 45 8 chrX 96038304 96038551 -66561379 - MIR SINE MIR 0 262 7 24 0 0 0 chrX 96039090 96039114 -66560816 + AT_rich Low_complexity Low_complexity 1 24 0 398 279 173 46 chrX 96039972 96040255 -66559675 - L2 LINE L2 -1215 2099 1781 222 286 131 0 chrX 96040197 96040281 -66559649 - MIR SINE MIR -109 153 59 * 1536 57 0 52 chrX 96040282 96040492 -66559438 - AluY SINE Alu -14 297 99 191 284 211 11 chrX 96042418 96042513 -66557417 + MIR3 SINE MIR 95 208 0 246 32 0 0 chrX 96044401 96044432 -66555498 + (GA)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chrX 96045015 96045040 -66554890 + (TG)n Simple_repeat Simple_repeat 2 26 0 3722 194 38 50 chrX 96046763 96048032 -66551898 - L1MB1 LINE L1 -691 5621 4343 1625 237 92 7 chrX 96048028 96048475 -66551455 + L1MB1 LINE L1 5616 6100 -89 * 1805 200 190 106 chrX 96048908 96049459 -66550471 - L1MD3 LINE L1 0 7995 7492 242 194 11 161 chrX 96049459 96049552 -66550378 - MLT1F1 LTR MaLR -448 119 41 1805 200 190 106 chrX 96049552 96049922 -66550008 - L1MD3 LINE L1 -503 7492 6685 7061 179 36 133 chrX 96050438 96052281 -66547649 + L1PA15-16 LINE L1 3 1660 -5189 189 0 0 0 chrX 96052281 96052302 -66547628 + (TAA)n Simple_repeat Simple_repeat 3 23 0 7061 179 36 133 chrX 96052302 96052346 -66547584 + L1PA15-16 LINE L1 1660 1707 -5142 856 162 0 7 chrX 96052346 96052488 -66547442 + AluSg/x SINE Alu 169 309 -1 6227 226 108 13 chrX 96052489 96054891 -66545039 + L1PA15-16 LINE L1 1982 4541 -2308 411 211 56 11 chrX 96055243 96055333 -66544597 + MLT1A2 LTR MaLR 1 94 -280 * 465 148 74 0 chrX 96055332 96055413 -66544517 + MLT1B LTR MaLR 302 388 -2 290 398 76 12 chrX 96056028 96056199 -66543731 + L2 LINE L2 2707 2888 -426 1859 178 116 10 chrX 96056199 96056586 -66543344 + MSTA LTR MaLR 1 428 0 4086 137 11 40 chrX 96056588 96057305 -66542625 + MSTA-int LTR MaLR 3 698 -882 791 161 141 0 chrX 96057305 96057454 -66542476 + MSTA LTR MaLR 259 428 0 360 432 62 25 chrX 96057454 96057822 -66542108 + L2 LINE L2 2882 3263 -9 377 171 12 0 chrX 96059475 96059557 -66540373 - L1MA9 LINE L1 -2 6310 6228 586 183 32 0 chrX 96059558 96059684 -66540246 + L1MA9 LINE L1 5936 6065 -247 21 57 0 0 chrX 96059976 96060011 -66539919 + AT_rich Low_complexity Low_complexity 1 35 0 2766 152 15 27 chrX 96060058 96060583 -66539347 - L1MA6 LINE L1 0 6300 5782 288 31 115 10 chrX 96060585 96060681 -66539249 + (TA)n Simple_repeat Simple_repeat 2 107 0 420 113 69 6 chrX 96060708 96060867 -66539063 + (TA)n Simple_repeat Simple_repeat 2 170 0 * 500 71 38 82 chrX 96060830 96061013 -66538917 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 40 0 0 0 chrX 96061013 96061053 -66538877 + AT_rich Low_complexity Low_complexity 1 40 0 432 34 116 7 chrX 96061053 96061199 -66538731 + (TA)n Simple_repeat Simple_repeat 2 163 0 932 141 32 0 chrX 96061206 96061362 -66538568 - L1MA6 LINE L1 -494 5806 5646 5641 194 44 8 chrX 96061368 96062811 -66537119 + L1MA6 LINE L1 4134 5621 -679 * 6546 263 99 39 chrX 96062806 96067684 -66532246 - L1MD3 LINE L1 -20 8255 3095 4470 17 0 2 chrX 96067763 96068281 -66531649 - L1PA3 LINE L1 0 6155 5639 8449 23 0 2 chrX 96068281 96069556 -66530374 + L1PA3 LINE L1 4365 5636 -519 462 249 11 22 chrX 96069639 96069824 -66530106 + L1M4 LINE L1 2783 2965 -3181 24 53 0 0 chrX 96069824 96069862 -66530068 + AT_rich Low_complexity Low_complexity 1 38 0 1186 280 87 12 chrX 96069864 96070730 -66529200 - L1MD3 LINE L1 -3423 3003 2064 363 23 0 0 chrX 96070730 96070774 -66529156 + (CA)n Simple_repeat Simple_repeat 1 44 0 1186 280 87 12 chrX 96070774 96071003 -66528927 - L1MD3 LINE L1 -4362 2064 1853 714 259 89 58 chrX 96071009 96071114 -66528816 - L1MD3 LINE L1 -4891 1535 1435 300 27 0 0 chrX 96071114 96071151 -66528779 + (TG)n Simple_repeat Simple_repeat 2 38 0 714 259 89 58 chrX 96071151 96071473 -66528457 - L1MD3 LINE L1 -4991 1435 1095 183 42 0 0 chrX 96071510 96071534 -66528396 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 4877 177 21 7 chrX 96071569 96072621 -66527309 - L1MA4 LINE L1 -94 6206 5148 185 333 0 0 chrX 96074052 96074112 -66525818 + MIR SINE MIR 66 125 -137 432 255 133 43 chrX 96074267 96074455 -66525475 - MER63A DNA MER1_type -5 205 1 337 246 87 8 chrX 96074961 96075087 -66524843 - L1ME4a LINE L1 -26 6095 5960 5808 172 23 6 chrX 96075602 96077118 -66522812 - L1MA4A LINE L1 -5 6298 4759 23 0 0 0 chrX 96077163 96077186 -66522744 + AT_rich Low_complexity Low_complexity 1 23 0 2105 209 44 61 chrX 96077476 96078111 -66521819 + MLT1E3 LTR MaLR 1 624 0 192 413 36 32 chrX 96078145 96078392 -66521538 + L2 LINE L2 201 448 -2866 404 288 36 7 chrX 96078552 96078691 -66521239 + MLT1J LTR MaLR 37 179 -332 645 185 25 64 chrX 96078920 96078974 -66520956 - MSTA LTR MaLR -277 151 96 1624 193 10 7 chrX 96078974 96079279 -66520651 + AluJb SINE Alu 1 306 -6 645 185 25 64 chrX 96079279 96079381 -66520549 - MSTA LTR MaLR -332 96 1 608 209 27 0 chrX 96079436 96079546 -66520384 - AluJo SINE Alu -128 184 72 5540 266 35 38 chrX 96079553 96081444 -66518486 + L1PA15 LINE L1 999 2884 -4697 4725 229 30 14 chrX 96081445 96081755 -66518175 + L1PA15 LINE L1 2963 3266 -4318 1681 135 113 11 chrX 96081755 96082037 -66517893 - AluSx SINE Alu -1 311 1 4725 229 30 14 chrX 96082037 96082907 -66517023 + L1PA15 LINE L1 3266 4163 -3421 4520 185 17 2 chrX 96082912 96084209 -66515721 + L1PA15 LINE L1 6170 7489 -114 665 60 60 0 chrX 96084192 96084292 -66515638 + L1MA1 LINE L1 6092 6197 -105 * 783 145 8 0 chrX 96084306 96084437 -66515493 + L1PA15 LINE L1 7467 7598 -5 682 267 62 0 chrX 96084532 96084727 -66515203 - MIR SINE MIR -55 207 1 2473 87 0 0 chrX 96084894 96085206 -66514724 - AluSx SINE Alu 0 312 1 199 389 9 9 chrX 96085538 96085651 -66514279 + L2 LINE L2 1125 1237 -2077 389 259 48 48 chrX 96088056 96088203 -66511727 + MIR SINE MIR 60 206 -56 329 176 121 22 chrX 96088381 96088472 -66511458 + MER53 DNA DNA 1 100 -89 191 314 29 0 chrX 96089655 96089725 -66510205 + MIR SINE MIR 73 144 -118 4294 156 13 7 chrX 96091509 96091868 -66508062 - L1PB4 LINE L1 -3 6153 5798 198 0 0 0 chrX 96091868 96091890 -66508040 + (TG)n Simple_repeat Simple_repeat 2 23 0 4294 156 13 7 chrX 96091890 96092293 -66507637 - L1PB4 LINE L1 -358 5798 5386 * 21986 109 10 2 chrX 96092288 96096454 -66503476 - L1PA8 LINE L1 -4 6168 1970 10109 225 106 93 chrX 96096445 96099352 -66500578 + L1PB3 LINE L1 373 3496 -2650 * 497 268 8 0 chrX 96099352 96099479 -66500451 + MLT1A1 LTR MaLR 6 133 -232 10109 225 106 93 chrX 96099479 96101412 -66498518 + L1PB3 LINE L1 3496 5403 -743 1911 126 3 3 chrX 96101412 96101713 -66498217 + L1P4 LINE L1 5470 5770 -396 12199 236 35 19 chrX 96101746 96107687 -66492243 + L1PA16 LINE L1 3 5213 -1657 3569 94 14 20 chrX 96107687 96108240 -66491690 + L1MA1 LINE L1 5753 6302 0 12199 236 35 19 chrX 96108240 96109553 -66490377 + L1PA16 LINE L1 5213 6504 -366 2057 143 82 31 chrX 96109581 96109633 -66490297 + L1PB3 LINE L1 5658 5706 -448 2057 179 0 0 chrX 96109633 96109990 -66489940 + L1PB3 LINE L1 5792 6148 -6 2057 143 82 31 chrX 96109990 96110112 -66489818 + L1PB3 LINE L1 5706 6148 -6 1199 129 29 5 chrX 96110131 96110340 -66489590 + L1PA16 LINE L1 6660 6873 -9 27 49 0 0 chrX 96110340 96110381 -66489549 + AT_rich Low_complexity Low_complexity 1 41 0 240 282 24 16 chrX 96110494 96110618 -66489312 + L1P5 LINE L1 5328 5452 -702 1548 141 0 12 chrX 96110680 96110929 -66489001 - L1P LINE L1 -2007 4139 3894 260 233 167 33 chrX 96161897 96161987 -66437943 - MER5A DNA MER1_type -38 151 50 22 35 0 0 chrX 96162421 96162450 -66437480 + AT_rich Low_complexity Low_complexity 1 29 0 217 338 103 24 chrX 96162501 96162673 -66437257 + MIR3 SINE MIR 3 181 -69 760 220 98 19 chrX 96163372 96163586 -66436344 - L1ME1 LINE L1 -18 6148 5918 * 1447 195 49 0 chrX 96163566 96163873 -66436057 - L1ME1 LINE L1 -784 5575 5254 818 172 62 29 chrX 96164078 96164287 -66435643 - MER33 DNA MER1_type -107 217 2 258 297 25 39 chrX 96165071 96165155 -66434775 + MIR SINE MIR 6 88 -120 2393 261 52 87 chrX 96165331 96166594 -66433336 - L1MCc LINE L1 -4966 1456 237 9159 33 0 9 chrX 96166750 96167919 -66432011 + L1P LINE L1 2457 3615 -2531 703 257 114 16 chrX 96167973 96168411 -66431519 + L1M4 LINE L1 4226 4704 -1442 1686 163 6 31 chrX 96169406 96169725 -66430205 + AluJo SINE Alu 1 311 -1 308 320 123 35 chrX 96170353 96170556 -66429374 - MIR SINE MIR -40 222 2 23 0 0 0 chrX 96170566 96170589 -66429341 + AT_rich Low_complexity Low_complexity 1 23 0 398 299 184 16 chrX 96171247 96171491 -66428439 - L2 LINE L2 -1311 2003 1719 406 0 0 36 chrX 96172422 96172478 -66427452 + (TA)n Simple_repeat Simple_repeat 1 54 0 299 283 87 11 chrX 96172997 96173089 -66426841 - MIR SINE MIR -133 129 31 394 0 0 125 chrX 96173160 96173224 -66426706 + L1PA4 LINE L1 6099 6154 -1 24 32 0 0 chrX 96173655 96173686 -66426244 + AT_rich Low_complexity Low_complexity 1 31 0 8970 39 0 2 chrX 96174483 96175596 -66424334 + L1P LINE L1 1396 2506 -3640 6312 134 11 7 chrX 96175696 96176707 -66423223 + L1PB1 LINE L1 4775 5794 -357 387 0 0 0 chrX 96176707 96176750 -66423180 + (TA)n Simple_repeat Simple_repeat 1 43 0 6312 134 11 7 chrX 96176750 96177107 -66422823 + L1PB1 LINE L1 5794 6148 -3 2145 212 22 52 chrX 96177114 96177961 -66421969 + L1MA4 LINE L1 4734 5548 -743 3035 166 37 12 chrX 96177972 96178616 -66421314 + L1MA4 LINE L1 5640 6299 -1 2765 244 23 5 chrX 96178633 96179547 -66420383 - L1M4 LINE L1 -708 5476 4545 492 201 19 0 chrX 96180741 96180850 -66419080 - L1MA4A LINE L1 -1 6279 6046 475 160 9 9 chrX 96180853 96180959 -66418971 - L1MA4A LINE L1 -196 6107 6002 1005 271 4 12 chrX 96180961 96181219 -66418711 + L1MC4a LINE L1 6712 6967 -841 183 42 0 0 chrX 96181563 96181587 -66418343 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 734 97 73 16 chrX 96181587 96181706 -66418224 - AluSg/x SINE Alu -29 283 158 599 289 154 44 chrX 96182089 96182633 -66417297 + L1MC4a LINE L1 5991 6594 -1214 * 1574 248 75 46 chrX 96182628 96183254 -66416676 + L1MC4 LINE L1 6702 7345 -697 476 88 44 29 chrX 96183474 96183610 -66416320 + (TA)n Simple_repeat Simple_repeat 1 138 0 246 143 0 20 chrX 96183667 96183716 -66416214 - L1MC4a LINE L1 -543 7265 7218 256 294 44 20 chrX 96183894 96184146 -66415784 + L1 LINE L1 4777 5034 -1112 258 32 0 0 chrX 96184146 96184177 -66415753 + (A)n Simple_repeat Simple_repeat 1 31 0 5086 122 39 40 chrX 96184187 96185320 -66414610 + L1PA15 LINE L1 5042 6165 0 390 298 18 36 chrX 96185592 96185760 -66414170 - MIR SINE MIR 0 262 98 209 308 0 0 chrX 96185882 96185934 -66413996 + GA-rich Low_complexity Low_complexity 4 55 0 29 60 0 0 chrX 96187177 96187227 -66412703 + AT_rich Low_complexity Low_complexity 1 50 0 342 0 0 0 chrX 96187317 96187355 -66412575 + (CA)n Simple_repeat Simple_repeat 2 39 0 468 0 0 0 chrX 96188221 96188273 -66411657 + (TA)n Simple_repeat Simple_repeat 2 53 0 264 253 24 24 chrX 96188726 96188896 -66411034 + C-rich Low_complexity Low_complexity 6 175 0 257 209 68 6 chrX 96188813 96188976 -66410954 + (CA)n Simple_repeat Simple_repeat 1 173 0 * 2558 206 25 8 chrX 96189591 96190182 -66409748 + L1MB5 LINE L1 3563 4163 -1983 1114 173 5 0 chrX 96190183 96190403 -66409527 - L1 LINE L1 -1401 4745 4525 2298 153 6 6 chrX 96190502 96190861 -66409069 + THE1B LTR MaLR 6 364 0 2096 234 70 0 chrX 96190871 96191383 -66408547 + L1MB5 LINE L1 5581 6128 -46 225 160 40 0 chrX 96191409 96191459 -66408471 + L1MB5 LINE L1 6115 6166 -8 2459 229 8 8 chrX 96194772 96195391 -66404539 - L1 LINE L1 -2337 3809 3191 224 206 0 41 chrX 96196094 96196167 -66403763 + (TTG)n Simple_repeat Simple_repeat 3 72 0 342 314 85 27 chrX 96197250 96197473 -66402457 + L2 LINE L2 1901 2136 -1178 246 311 22 0 chrX 96197610 96197700 -66402230 - MLT1H LTR MaLR 0 555 464 389 206 211 86 chrX 96197776 96197928 -66402002 - MLT1H LTR MaLR -221 328 132 482 232 79 30 chrX 96197962 96198126 -66401804 + L2 LINE L2 2205 2376 -938 703 299 97 19 chrX 96198150 96198471 -66401459 - L2 LINE L2 0 3313 2968 455 306 122 38 chrX 96198569 96198628 -66401302 + L2 LINE L2 2515 2568 -746 1825 152 18 3 chrX 96198628 96198956 -66400974 - L1MA1 LINE L1 -1 6301 5969 455 306 122 38 chrX 96198956 96199216 -66400714 + L2 LINE L2 2568 2861 -453 224 420 132 14 chrX 96199291 96199503 -66400427 + L2 LINE L2 2963 3199 -73 * 317 273 62 62 chrX 96199491 96199667 -66400263 + L2 LINE L2 3114 3289 -24 2498 257 42 21 chrX 96199674 96200519 -66399411 - L1ME3A LINE L1 0 6170 5307 5074 99 0 9 chrX 96200547 96201296 -66398634 - L1PA8 LINE L1 -961 5185 4444 6491 79 12 7 chrX 96201296 96202284 -66397646 + L1PA8 LINE L1 5178 6170 -2 5303 47 1 6 chrX 96202835 96203523 -66396407 + L1P LINE L1 4242 4926 -1220 22 0 0 0 chrX 96203547 96203569 -66396361 + AT_rich Low_complexity Low_complexity 1 22 0 750 313 100 70 chrX 96204197 96204779 -66395151 - L2 LINE L2 0 3313 2721 820 109 0 0 chrX 96205021 96205131 -66394799 - MSTA LTR MaLR 0 428 319 390 176 0 0 chrX 96205826 96205945 -66393985 + T-rich Low_complexity Low_complexity 1 119 0 22882 30 14 0 chrX 96206060 96209587 -66390343 + L1PA3 LINE L1 2614 6152 -3 6831 163 9 9 chrX 96209866 96210224 -66389706 - L1PB1 LINE L1 0 6151 5795 279 0 0 0 chrX 96210224 96210255 -66389675 + (TA)n Simple_repeat Simple_repeat 2 32 0 6831 163 9 9 chrX 96210255 96212233 -66387697 - L1PB1 LINE L1 -356 5795 3814 1365 214 40 27 chrX 96212239 96212684 -66387246 + L1 LINE L1 2829 3279 -2867 1708 254 27 20 chrX 96212854 96213444 -66386486 - L1 LINE L1 -1712 4434 3841 459 180 10 40 chrX 96213526 96213626 -66386304 + MER4A LTR ERV1 2 98 -566 1984 125 3 22 chrX 96213626 96213978 -66385952 + MER4A LTR ERV1 261 664 0 2562 135 181 8 chrX 96213980 96214460 -66385470 + MER4A-int LTR ERV1 1 563 -6035 1219 176 9 9 chrX 96214574 96214795 -66385135 - MER4B LTR ERV1 -1 609 389 275 48 0 24 chrX 96214846 96214888 -66385042 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1333 227 67 36 chrX 96214927 96214970 -66384960 + MER4-int LTR ERV1 1845 1885 -4446 2164 123 49 22 chrX 96214970 96215335 -66384595 - THE1C LTR MaLR 0 375 1 9676 137 35 5 chrX 96215335 96216869 -66383061 - THE1C-int LTR MaLR 0 1580 1 1912 130 76 20 chrX 96216869 96217224 -66382706 - THE1C LTR MaLR 0 375 1 1333 227 67 36 chrX 96217224 96217535 -66382395 + MER4-int LTR ERV1 1884 2212 -4119 3156 172 9 6 chrX 96217572 96218107 -66381823 + MER4-int LTR ERV1 199 735 -6023 1215 47 0 0 chrX 96218117 96218265 -66381665 + L1PA3 LINE L1 6008 6155 0 2315 140 38 41 chrX 96218289 96218865 -66381065 + MER4-int LTR ERV1 732 1404 -5354 1033 207 78 53 chrX 96218544 96218901 -66381029 + LTR57-int LTR ERVL 812 1177 -4166 * 1296 180 0 0 chrX 96218941 96219158 -66380772 - LTR8 LTR ERV1 -474 217 1 3031 139 175 23 chrX 96219158 96219956 -66379974 + MER4-int LTR ERV1 2737 3656 -2942 9696 139 59 33 chrX 96219985 96221889 -66378041 + MER4-int LTR ERV1 3817 5769 -829 4356 124 11 0 chrX 96221892 96222595 -66377335 + L1P LINE L1 2507 3217 -2929 7505 120 4 13 chrX 96222595 96223837 -66376093 + L1PA7 LINE L1 2776 4006 -2140 9860 102 6 0 chrX 96224094 96226286 -66373644 + L1PA7 LINE L1 3955 6152 -2 1541 301 92 55 chrX 96226290 96227404 -66372526 - L1M4 LINE L1 -5374 1168 14 327 238 26 20 chrX 96228092 96228243 -66371687 + L1M LINE L1 5259 5410 -752 575 186 10 10 chrX 96228327 96228429 -66371501 + Tigger3b DNA MER2_type 1 102 -1129 * 5360 133 36 8 chrX 96228427 96229358 -66370572 + Tigger3b DNA MER2_type 274 1231 0 489 196 0 0 chrX 96229794 96229886 -66370044 - L1PA15 LINE L1 -13 6152 6061 4864 176 21 5 chrX 96230012 96231259 -66368671 - L1PA15 LINE L1 -111 6054 4786 3249 235 18 29 chrX 96231644 96232204 -66367726 - L1 LINE L1 -1251 4895 4374 2211 123 3 7 chrX 96232204 96232514 -66367416 - AluSq SINE Alu -4 309 1 3249 235 18 29 chrX 96232514 96233016 -66366914 - L1 LINE L1 -1772 4374 3868 * 3428 247 17 6 chrX 96233002 96233983 -66365947 - L1PA15 LINE L1 -2367 3779 2788 660 254 61 33 chrX 96233999 96234212 -66365718 + MER20 DNA MER1_type 1 219 0 3768 250 55 41 chrX 96235516 96238565 -66361365 + L1M2a LINE L1 1631 4420 -2747 1261 152 121 9 chrX 96238684 96238915 -66361015 - MSTA LTR MaLR -171 257 1 202 381 8 24 chrX 96239040 96239166 -66360764 + L2 LINE L2 2857 2980 -292 1519 226 19 25 chrX 96239343 96239710 -66360220 - MLT1A1 LTR MaLR 0 365 1 281 208 111 28 chrX 96243007 96243079 -66356851 + MER81 DNA DNA 1 78 -36 360 232 54 18 chrX 96243190 96243373 -66356557 + MLT1E1 LTR MaLR 49 234 -390 4550 179 27 19 chrX 96243430 96244343 -66355587 - MER49 LTR ERV1 -2 921 1 1269 159 86 0 chrX 96244343 96244563 -66355367 + MLT1E1 LTR MaLR 411 649 -5 1576 174 37 27 chrX 96244930 96245229 -66354701 - AluJb SINE Alu -10 302 1 721 229 57 12 chrX 96245234 96245479 -66354451 - MER112 DNA MER1_type 0 256 1 357 273 85 42 chrX 96245506 96245671 -66354259 + MER5B DNA MER1_type 7 178 0 201 74 0 0 chrX 96245685 96245712 -66354218 + (T)n Simple_repeat Simple_repeat 1 27 0 222 319 0 0 chrX 96245771 96245843 -66354087 + MIR SINE MIR 117 188 -74 592 269 26 26 chrX 96246373 96246566 -66353364 - MIR SINE MIR -12 250 58 1000 182 50 146 chrX 96246572 96246935 -66352995 - MLT2D LTR ERVL -5 409 82 662 267 89 25 chrX 96246995 96247231 -66352699 - MIR SINE MIR -10 252 2 22 35 0 0 chrX 96247332 96247361 -66352569 + AT_rich Low_complexity Low_complexity 1 29 0 252 328 0 0 chrX 96247541 96247599 -66352331 - MIR SINE MIR -185 77 20 243 0 0 0 chrX 96248541 96248568 -66351362 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 341 136 0 12 chrX 96249097 96249178 -66350752 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 24 41 0 20 chrX 96250443 96250468 -66349462 + AT_rich Low_complexity Low_complexity 1 26 -22 2327 87 3 3 chrX 96250468 96250777 -66349153 + AluSc SINE Alu 1 309 0 24 41 0 20 chrX 96250777 96250800 -66349130 + AT_rich Low_complexity Low_complexity 26 48 0 310 304 0 0 chrX 96251461 96251563 -66348367 - Tigger3(Golem) DNA MER2_type -2 3027 2926 238 183 33 52 chrX 96252363 96252516 -66347414 + (CACAA)n Simple_repeat Simple_repeat 2 151 0 351 0 0 0 chrX 96253570 96253609 -66346321 + (CA)n Simple_repeat Simple_repeat 2 40 0 287 240 104 10 chrX 96254297 96254393 -66345537 + L1MCa LINE L1 3 107 -6319 3771 230 108 28 chrX 96254395 96254609 -66345321 + L1MCa LINE L1 84 279 -6147 488 45 15 0 chrX 96254609 96254675 -66345255 - L1PA7 LINE L1 -3 6151 6085 3771 230 108 28 chrX 96254675 96255556 -66344374 + L1MCa LINE L1 279 1088 -5338 2456 75 0 0 chrX 96255556 96255864 -66344066 + AluY SINE Alu 1 308 -3 3771 230 108 28 chrX 96255864 96256105 -66343825 + L1MCa LINE L1 1088 1308 -5118 183 42 0 0 chrX 96256105 96256129 -66343801 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3771 230 108 28 chrX 96256129 96257850 -66342080 + L1MCa LINE L1 1308 3380 -3046 * 6168 159 13 14 chrX 96257833 96259276 -66340654 + L1P4 LINE L1 4184 5619 -544 1109 189 12 150 chrX 96259311 96259718 -66340212 + L1MCa LINE L1 3873 4223 -2203 451 241 60 18 chrX 96259729 96259895 -66340035 + L1MCa LINE L1 4752 4924 -1502 1573 184 130 20 chrX 96259911 96260265 -66339665 - MSTA LTR MaLR -35 393 1 8761 128 20 83 chrX 96260265 96261950 -66337980 - MSTA-int LTR MaLR 0 1580 3 1189 179 132 32 chrX 96261952 96262293 -66337637 - THE1C LTR MaLR 0 375 1 5229 203 29 36 chrX 96262293 96263537 -66336393 - L1P LINE L1 -1248 4898 3664 9487 240 41 5 chrX 96263551 96267237 -66332693 + L1MB3 LINE L1 2245 6071 -112 1413 200 116 37 chrX 96267237 96267764 -66332166 + MLT2A2 LTR ERVL 1 554 0 528 124 9 38 chrX 96267764 96267869 -66332061 + L1MB3 LINE L1 6067 6168 -15 1456 270 83 24 chrX 96267924 96270439 -66329491 + L1ME3A LINE L1 2806 5482 -680 521 258 63 0 chrX 96270441 96270631 -66329299 - L1ME LINE L1 -448 5714 5513 878 206 52 52 chrX 96270668 96270916 -66329014 + L1ME3A LINE L1 5762 6009 -161 340 329 49 49 chrX 96271013 96271256 -66328674 + MIR SINE MIR 20 262 0 214 361 59 59 chrX 96271413 96271668 -66328262 - L2 LINE L2 -557 2757 2503 372 271 107 0 chrX 96273839 96273961 -66325969 - MER58B DNA MER1_type 0 341 207 13884 124 11 17 chrX 96273975 96277081 -66322849 - L1PA8 LINE L1 -4 6168 3071 2522 82 0 6 chrX 96277082 96277423 -66322507 - L1PA7 LINE L1 0 6154 5816 1475 147 80 0 chrX 96277423 96277709 -66322221 - L1PA8 LINE L1 -3075 3071 2763 282 255 0 0 chrX 96277717 96277768 -66322162 - MER58B DNA MER1_type -287 54 4 1994 176 36 28 chrX 96279423 96279971 -66319959 - MLT2A2 LTR ERVL 0 554 1 1268 122 5 0 chrX 96280049 96280238 -66319692 - HERVL LTR ERVL -4553 1101 912 1735 235 130 92 chrX 96280547 96280801 -66319129 - MLT1E2 LTR MaLR 0 626 383 3039 72 5 0 chrX 96280801 96281206 -66318724 - L1PA7 LINE L1 0 6154 5748 1735 235 130 92 chrX 96281206 96281581 -66318349 - MLT1E2 LTR MaLR -243 383 1 238 263 0 0 chrX 96281605 96281662 -66318268 - L2 LINE L2 0 3313 3257 580 343 57 16 chrX 96281721 96281966 -66317964 + MIR SINE MIR 1 255 -7 183 80 0 0 chrX 96282318 96282343 -66317587 + (CA)n Simple_repeat Simple_repeat 1 25 0 1018 241 46 28 chrX 96283696 96284030 -66315900 + MLT1I LTR MaLR 6 409 0 21 57 0 0 chrX 96284870 96284905 -66315025 + AT_rich Low_complexity Low_complexity 1 35 0 1736 15 0 0 chrX 96285407 96285603 -66314327 - L1P2 LINE L1 -381 5774 5579 1447 22 38 5 chrX 96285603 96285774 -66314156 + L1PA4 LINE L1 5964 6154 -1 410 0 0 20 chrX 96287923 96287974 -66311956 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chrX 96287989 96288012 -66311918 + AT_rich Low_complexity Low_complexity 1 23 0 296 283 87 11 chrX 96288492 96288584 -66311346 - MIR SINE MIR -133 129 31 397 0 0 125 chrX 96288655 96288719 -66311211 + L1PA4 LINE L1 6099 6154 -1 698 303 75 4 chrX 96289311 96289552 -66310378 - MIR SINE MIR -1 261 4 187 283 98 11 chrX 96290198 96290290 -66309640 - MIR SINE MIR -93 169 70 219 273 61 0 chrX 96290320 96290386 -66309544 - MIR SINE MIR -8 254 185 620 216 170 0 chrX 96291495 96291648 -66308282 + MER5A DNA MER1_type 9 187 -2 279 244 0 26 chrX 96291659 96291737 -66308193 - MER5B DNA MER1_type -1 177 102 396 0 0 0 chrX 96291795 96291839 -66308091 + (TA)n Simple_repeat Simple_repeat 2 45 0 309 26 0 0 chrX 96292706 96292744 -66307186 + (TG)n Simple_repeat Simple_repeat 2 39 0 29 60 0 0 chrX 96292834 96292884 -66307046 + AT_rich Low_complexity Low_complexity 1 50 0 209 308 0 0 chrX 96294127 96294179 -66305751 + CT-rich Low_complexity Low_complexity 4 55 0 403 298 18 36 chrX 96294301 96294469 -66305461 + MIR SINE MIR 98 262 0 5519 195 10 39 chrX 96294741 96296895 -66303035 - L1PA15 LINE L1 0 6165 4058 23 33 0 0 chrX 96297862 96297892 -66302038 + AT_rich Low_complexity Low_complexity 1 30 0 1874 121 0 0 chrX 96299705 96299977 -66299953 - L1PA8 LINE L1 -1355 4791 4520 6730 57 23 10 chrX 96299977 96301355 -66298575 + L1PA8 LINE L1 4787 6172 0 2268 168 10 0 chrX 96302042 96302460 -66297470 - L1PA14 LINE L1 -909 5237 4816 5977 106 12 10 chrX 96302470 96303092 -66296838 + L1PA14 LINE L1 5254 5880 -281 3782 82 0 23 chrX 96303092 96303615 -66296315 - MER9 LTR ERVK 0 511 1 5977 106 12 10 chrX 96303615 96303898 -66296032 + L1PA14 LINE L1 5880 6161 0 305 134 134 0 chrX 96303904 96303971 -66295959 + MER34B LTR ERV1 407 482 -83 6215 126 25 5 chrX 96304956 96305853 -66294077 - L1PA8A LINE L1 -584 5547 4620 185 0 40 0 chrX 96305853 96305878 -66294052 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 6215 126 25 5 chrX 96305878 96306182 -66293748 - L1PA8A LINE L1 -1511 4620 4324 4021 70 47 14 chrX 96306182 96306735 -66293195 + L1PA8A LINE L1 5558 6131 0 22 70 0 0 chrX 96306977 96307020 -66292910 + AT_rich Low_complexity Low_complexity 1 43 0 222 208 0 0 chrX 96308753 96308806 -66291124 + (TG)n Simple_repeat Simple_repeat 2 54 0 242 320 123 16 chrX 96308987 96309109 -66290821 - MIR3 SINE MIR -12 196 62 957 291 43 46 chrX 96309233 96309604 -66290326 + L2 LINE L2 1484 1853 -1461 1135 157 12 13 chrX 96309613 96309818 -66290112 - MSTB LTR MaLR -5 421 243 1198 109 29 0 chrX 96310459 96310634 -66289296 + L1PA7 LINE L1 5974 6153 -1 193 301 0 55 chrX 96310914 96310987 -66288943 - L3 LINE CR1 -13 1564 1496 360 261 127 100 chrX 96310987 96311278 -66288652 - L3 LINE CR1 -214 1363 1065 24 0 0 0 chrX 96311610 96311634 -66288296 + AT_rich Low_complexity Low_complexity 1 24 0 1962 56 28 0 chrX 96311997 96312248 -66287682 + L1PA7 LINE L1 5893 6150 -4 25 31 0 0 chrX 96312297 96312329 -66287601 + AT_rich Low_complexity Low_complexity 1 32 0 2554 192 4 11 chrX 96315065 96315528 -66284402 + L1PA12 LINE L1 258 717 -6864 5929 115 6 1 chrX 96315529 96317107 -66282823 + L1PA12 LINE L1 4585 6168 0 21 71 0 0 chrX 96317147 96317189 -66282741 + AT_rich Low_complexity Low_complexity 1 42 0 234 310 0 0 chrX 96317243 96317314 -66282616 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 29 0 0 0 chrX 96317499 96317528 -66282402 + AT_rich Low_complexity Low_complexity 1 29 0 658 187 0 9 chrX 96317980 96318087 -66281843 + Tigger3(Golem) DNA MER2_type 2 107 -2922 * 2862 132 81 6 chrX 96318079 96318702 -66281228 + Tigger3(Golem) DNA MER2_type 2278 3028 -1 2128 279 63 40 chrX 96319485 96320316 -66279614 - L2 LINE L2 -272 3041 2189 287 241 43 103 chrX 96321337 96321453 -66278477 - MIR3 SINE MIR -3 205 97 387 41 0 0 chrX 96322171 96322220 -66277710 + (TG)n Simple_repeat Simple_repeat 1 49 0 649 192 45 68 chrX 96324336 96324513 -66275417 + MIR SINE MIR 80 252 -10 350 276 168 65 chrX 96324521 96324753 -66275177 - MIR SINE MIR -1 261 6 180 111 0 0 chrX 96325152 96325179 -66274751 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 304 341 47 42 chrX 96325318 96325532 -66274398 - LTR67 LTR ERVL -341 216 2 276 30 0 0 chrX 96325785 96325818 -66274112 + (TG)n Simple_repeat Simple_repeat 2 34 0 364 298 127 25 chrX 96327895 96328053 -66271877 - L2 LINE L2 0 3272 3099 249 183 33 0 chrX 96328386 96328446 -66271484 + (TA)n Simple_repeat Simple_repeat 2 63 0 231 36 0 0 chrX 96328447 96328475 -66271455 + (TG)n Simple_repeat Simple_repeat 2 29 0 1810 154 25 0 chrX 96330475 96330799 -66269131 + L1MA4A LINE L1 5966 6297 -6 339 275 42 52 chrX 96330904 96331097 -66268833 - LTR33 LTR ERVL 0 521 331 609 325 15 19 chrX 96331174 96331380 -66268550 - LTR33 LTR ERVL -306 215 11 293 278 135 38 chrX 96331416 96331549 -66268381 - MIR3 SINE MIR -29 179 34 510 350 6 6 chrX 96331883 96332046 -66267884 + MIR SINE MIR 13 175 -87 193 167 17 17 chrX 96332812 96332872 -66267058 + (TATG)n Simple_repeat Simple_repeat 4 63 0 386 267 70 116 chrX 96333140 96333485 -66266445 - L1MC4a LINE L1 -1959 5849 5521 255 173 0 0 chrX 96333573 96333625 -66266305 + (TG)n Simple_repeat Simple_repeat 2 53 0 330 292 20 55 chrX 96334370 96334572 -66265358 + L1ME4a LINE L1 5723 5917 -204 402 284 50 78 chrX 96334888 96335106 -66264824 + MIR SINE MIR 26 237 -25 802 276 42 6 chrX 96335106 96335353 -66264577 + MLT1J2 LTR MaLR 1 255 -191 591 269 86 0 chrX 96335332 96335507 -66264423 + MLT1J1 LTR MaLR 255 444 -2 * 473 337 23 0 chrX 96338105 96338280 -66261650 - LTR33 LTR ERVL 0 521 343 289 242 32 0 chrX 96338296 96338358 -66261572 + LTR33 LTR ERVL 153 216 -305 * 500 355 33 0 chrX 96338355 96338538 -66261392 - LTR33 LTR ERVL -330 191 3 1987 232 57 98 chrX 96338879 96339561 -66260369 - MLT1E3 LTR MaLR 0 624 1 1824 165 3 19 chrX 96340758 96341067 -66258863 + AluJo SINE Alu 1 304 -8 405 0 0 0 chrX 96341118 96341163 -66258767 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 522 279 72 68 chrX 96342422 96342464 -66257466 + MIR SINE MIR 40 80 -182 2451 161 14 18 chrX 96342464 96342898 -66257032 + MSTB1 LTR MaLR 1 432 0 522 279 72 68 chrX 96342898 96343077 -66256853 + MIR SINE MIR 80 262 0 1159 259 62 20 chrX 96343834 96344189 -66255741 - MLT1I LTR MaLR -39 370 1 2002 138 75 26 chrX 96344460 96344807 -66255123 - THE1B LTR MaLR 0 364 1 4703 97 18 5 chrX 96344807 96345465 -66254465 - THE1B-int LTR MaLR 0 1580 914 6538 234 73 45 chrX 96346585 96349162 -66250768 + L1M3e LINE L1 460 2976 -4520 28 0 0 0 chrX 96349173 96349201 -66250729 + AT_rich Low_complexity Low_complexity 1 28 0 1159 182 20 170 chrX 96351267 96351761 -66248169 + L1M3e LINE L1 2785 3527 -4039 12778 214 56 33 chrX 96351763 96356659 -66243271 + L1PA13 LINE L1 2 4267 -3317 3803 207 7 1 chrX 96356655 96357478 -66242452 - L1P5 LINE L1 -749 5397 4570 * 2948 87 7 5 chrX 96357473 96357897 -66242033 + L1P5 LINE L1 5368 5792 -359 * 338 266 0 32 chrX 96357898 96357992 -66241938 - L1MC4 LINE L1 -1340 6702 6612 2291 122 3 21 chrX 96357994 96358370 -66241560 + L1PB1 LINE L1 5782 6150 -1 13021 173 6 0 chrX 96358399 96359366 -66240564 + L1PA13 LINE L1 4252 5212 -2389 2094 112 21 0 chrX 96359366 96359653 -66240277 + AluSq SINE Alu 1 293 -20 13021 173 6 0 chrX 96359653 96362024 -66237906 + L1PA13 LINE L1 5212 7596 -5 446 250 128 13 chrX 96362334 96362490 -66237440 + MIR SINE MIR 59 232 -30 526 295 101 30 chrX 96362612 96362849 -66237081 + MIR SINE MIR 6 259 -3 5188 151 20 4 chrX 96362953 96364253 -66235677 - L1PA16 LINE L1 -6 6160 4848 542 259 0 9 chrX 96364550 96364666 -66235264 - LTR67 LTR ERVL -112 445 331 1955 134 10 7 chrX 96364690 96364980 -66234950 + AluSx SINE Alu 5 295 -17 7076 131 36 21 chrX 96366012 96367216 -66232714 + Tigger3b DNA MER2_type 1 1222 -9 22 35 0 0 chrX 96368382 96368411 -66231519 + AT_rich Low_complexity Low_complexity 1 29 0 666 289 67 10 chrX 96369709 96369917 -66230013 - MIR SINE MIR -33 229 10 262 289 0 13 chrX 96371061 96371137 -66228793 + MIR SINE MIR 175 249 -13 1142 208 0 0 chrX 96372511 96372727 -66227203 - AluSg/x SINE Alu -1 311 96 269 278 0 0 chrX 96372764 96372818 -66227112 - L2 LINE L2 -19 3253 3200 330 221 39 0 chrX 96373454 96373531 -66226399 - MER116 DNA Mariner 0 80 1 2393 82 3 16 chrX 96374185 96374500 -66225430 - AluSp SINE Alu 0 313 3 982 323 82 11 chrX 96374866 96375303 -66224627 - L3 LINE CR1 0 1577 1110 1573 230 25 15 chrX 96375415 96375819 -66224111 + L1ME2 LINE L1 5689 6096 -68 5053 138 1 12 chrX 96375998 96376821 -66223109 - L1PA16 LINE L1 -9 6157 5344 3804 217 11 13 chrX 96376813 96377716 -66222214 + L1PA16 LINE L1 4433 5333 -813 * 629 165 0 60 chrX 96379031 96379164 -66220766 + FLAM_C SINE Alu 2 126 -7 2362 184 8 2 chrX 96379185 96379582 -66220348 + MSTB LTR MaLR 1 399 -27 1895 101 0 4 chrX 96379582 96379840 -66220090 + THE1A LTR MaLR 1 257 -98 2162 94 103 8 chrX 96379840 96380207 -66219723 - LTR7 LTR ERV1 0 450 1 818 73 18 0 chrX 96380207 96380309 -66219621 + THE1A LTR MaLR 252 355 0 4480 170 44 6 chrX 96380341 96381142 -66218788 + MSTB-int LTR MaLR 1 831 -820 203 189 0 0 chrX 96382239 96382276 -66217654 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 421 360 75 21 chrX 96383642 96384012 -66215918 + L2 LINE L2 2695 3083 -189 565 333 38 6 chrX 96384466 96384649 -66215281 + MIR SINE MIR 4 192 -70 270 0 0 0 chrX 96385348 96385378 -66214552 + (CA)n Simple_repeat Simple_repeat 1 30 0 7634 26 0 2 chrX 96386137 96387607 -66212323 + L1PA3 LINE L1 4685 6155 0 292 69 0 86 chrX 96387615 96387673 -66212257 + L1P5 LINE L1 5385 5437 -717 9383 161 32 13 chrX 96387685 96389369 -66210561 + L1MB1 LINE L1 1274 2989 -4576 6486 171 22 23 chrX 96389789 96390794 -66209136 - L1P LINE L1 -1464 4682 3677 338 0 0 23 chrX 96390794 96390837 -66209093 + (TTG)n Simple_repeat Simple_repeat 3 44 0 6486 171 22 23 chrX 96390837 96391128 -66208802 - L1P LINE L1 -2469 3677 3387 4424 245 15 19 chrX 96391161 96392183 -66207747 + L1MA1 LINE L1 168 1185 -6380 2375 121 22 11 chrX 96392183 96392554 -66207376 + THE1C LTR MaLR 1 375 0 9564 120 26 37 chrX 96392554 96394094 -66205836 + THE1C-int LTR MaLR 1 1523 -57 1011 158 171 74 chrX 96394256 96394554 -66205376 + THE1C LTR MaLR 1 327 -48 529 133 0 11 chrX 96394557 96394647 -66205283 + THE1C-int LTR MaLR 1492 1580 0 2122 154 19 8 chrX 96394647 96395018 -66204912 + THE1C LTR MaLR 1 375 0 14077 174 21 12 chrX 96395018 96401396 -66198534 + L1MA1 LINE L1 1181 7615 -106 7441 202 26 39 chrX 96401400 96404250 -66195680 + L1MB1 LINE L1 4772 7587 0 508 313 82 53 chrX 96404362 96404848 -66195082 + L1 LINE L1 2721 3220 -2926 381 208 8 24 chrX 96404863 96404988 -66194942 + GA-rich Low_complexity Low_complexity 3 125 0 19744 176 24 10 chrX 96405321 96411166 -66188764 - L1MA1 LINE L1 0 7721 1729 279 0 0 0 chrX 96411166 96411197 -66188733 + (TC)n Simple_repeat Simple_repeat 2 32 0 19744 176 24 10 chrX 96411197 96412940 -66186990 - L1MA1 LINE L1 -5992 1729 13 2090 179 60 5 chrX 96412983 96413385 -66186545 - MSTA LTR MaLR -4 424 1 8786 197 12 2 chrX 96413399 96415020 -66184910 - MSTA-int LTR MaLR -15 1636 1 1773 206 103 0 chrX 96415020 96415408 -66184522 - MSTA LTR MaLR 0 428 1 208 200 0 0 chrX 96418135 96418175 -66181755 - L2 LINE L2 0 3313 3274 4514 196 29 11 chrX 96418707 96420178 -66179752 - L1MB2 LINE L1 -13 6158 4655 28 0 0 0 chrX 96420215 96420243 -66179687 + AT_rich Low_complexity Low_complexity 1 28 0 419 260 29 46 chrX 96420616 96420789 -66179141 - HAL1 LINE L1 -4 2503 2334 21 0 0 0 chrX 96420865 96420886 -66179044 + AT_rich Low_complexity Low_complexity 1 21 0 12338 216 27 15 chrX 96420886 96423300 -66176630 - L1PA16 LINE L1 -12 6857 4472 209 32 0 32 chrX 96423300 96423331 -66176599 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 12338 216 27 15 chrX 96423331 96425308 -66174622 - L1PA16 LINE L1 -2397 4472 2393 2435 143 0 3 chrX 96425308 96425673 -66174257 - THE1B LTR MaLR 0 364 1 12338 216 27 15 chrX 96425673 96426210 -66173720 - L1PA16 LINE L1 -4476 2393 1864 5341 138 38 28 chrX 96426218 96426342 -66173588 - L1PB2 LINE L1 -1 6150 6029 2275 88 0 39 chrX 96426342 96426650 -66173280 - AluSg SINE Alu -13 297 2 5341 138 38 28 chrX 96426650 96426833 -66173097 - L1PB2 LINE L1 -122 6029 5849 7266 101 8 23 chrX 96426833 96427920 -66172010 + MER11C LTR ERVK 1 1071 0 5341 138 38 28 chrX 96427920 96428627 -66171303 - L1PB2 LINE L1 -302 5849 5120 183 42 0 0 chrX 96428627 96428651 -66171279 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5341 138 38 28 chrX 96428651 96428885 -66171045 - L1PB2 LINE L1 -1031 5120 4890 * 6783 204 14 13 chrX 96428860 96431036 -66168894 - L1PA16 LINE L1 -5001 1848 1 266 302 52 0 chrX 96431039 96431155 -66168775 - HAL1 LINE L1 -166 2341 2220 22 0 0 0 chrX 96431247 96431269 -66168661 + AT_rich Low_complexity Low_complexity 1 22 0 1204 274 56 29 chrX 96431327 96431877 -66168053 - HAL1 LINE L1 -441 2066 1502 * 1486 292 129 41 chrX 96431876 96432879 -66167051 - HAL1 LINE L1 -1378 1129 39 21 0 0 0 chrX 96433566 96433587 -66166343 + AT_rich Low_complexity Low_complexity 1 21 0 23 92 0 0 chrX 96434797 96434862 -66165068 + AT_rich Low_complexity Low_complexity 1 65 0 27 62 0 0 chrX 96434949 96434997 -66164933 + AT_rich Low_complexity Low_complexity 1 48 0 673 297 65 45 chrX 96435047 96435674 -66164256 + L1ME4a LINE L1 5480 6119 -2 322 190 190 0 chrX 96436092 96436192 -66163738 - MER112 DNA MER1_type -83 177 59 1281 129 5 0 chrX 96436252 96436469 -66163461 + L1MA5 LINE L1 6083 6300 0 2346 97 0 3 chrX 96437296 96437606 -66162324 + AluSp SINE Alu 3 311 -2 308 331 0 53 chrX 96437683 96437816 -66162114 + MIR SINE MIR 76 201 -61 21 36 0 0 chrX 96437829 96437857 -66162073 + AT_rich Low_complexity Low_complexity 1 28 0 1482 288 24 46 chrX 96438322 96438781 -66161149 - MLT1H1 LTR MaLR 0 555 107 40605 45 1 1 chrX 96439056 96444844 -66155086 + L1PA5 LINE L1 361 6147 -7 22 35 0 0 chrX 96444850 96444879 -66155051 + AT_rich Low_complexity Low_complexity 1 29 0 376 340 58 21 chrX 96444976 96445167 -66154763 - MIR SINE MIR -54 208 11 214 319 52 52 chrX 96446951 96447067 -66152863 + L2 LINE L2 3149 3264 -8 23 86 0 0 chrX 96447067 96447125 -66152805 + AT_rich Low_complexity Low_complexity 1 58 0 232 146 0 0 chrX 96447722 96447770 -66152160 + L1PBa LINE L1 2695 2742 -4121 3753 55 2 2 chrX 96447829 96448300 -66151630 - L1PA7 LINE L1 -8 6146 5676 15282 168 54 54 chrX 96448509 96449598 -66150332 + L1M1 LINE L1 13 1101 -6464 2441 74 3 0 chrX 96449598 96449895 -66150035 - AluY SINE Alu -13 298 1 15282 168 54 54 chrX 96449895 96450015 -66149915 + L1M1 LINE L1 1101 1220 -6345 6626 25 0 4 chrX 96450015 96450798 -66149132 + L1PA3 LINE L1 5376 6155 0 15282 168 54 54 chrX 96450798 96452805 -66147125 + L1M1 LINE L1 1219 3230 -4335 5024 235 64 3 chrX 96452819 96454521 -66145409 + L1PA13 LINE L1 1 1934 -4853 386 264 0 0 chrX 96454515 96454621 -66145309 + L1M1 LINE L1 3863 3968 -3597 * 6159 142 24 12 chrX 96454617 96455904 -66144026 + L1MA2 LINE L1 4985 6286 -18 957 232 80 10 chrX 96456157 96456459 -66143471 - MER5C DNA MER1_type 0 324 2 316 258 0 0 chrX 96456795 96456861 -66143069 - L2 LINE L2 -1 3271 3206 1991 127 0 7 chrX 96456992 96457310 -66142620 + AluSx SINE Alu 1 283 -29 699 317 89 19 chrX 96457367 96457695 -66142235 + L1MC4a LINE L1 5419 5723 -2085 234 0 0 0 chrX 96457695 96457721 -66142209 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 246 32 0 0 chrX 96457720 96457751 -66142179 + (GA)n Simple_repeat Simple_repeat 2 32 0 699 317 89 19 chrX 96457721 96457883 -66142047 + L1MC4a LINE L1 5723 5911 -1897 1073 8 0 0 chrX 96459514 96459637 -66140293 + AluYa5/8 SINE Alu 187 309 -2 366 61 0 0 chrX 96459776 96459825 -66140105 + (CA)n Simple_repeat Simple_repeat 2 50 0 26 0 0 0 chrX 96460636 96460662 -66139268 + AT_rich Low_complexity Low_complexity 1 26 0 214 25 125 0 chrX 96460859 96460899 -66139031 + T-rich Low_complexity Low_complexity 1 45 0 11767 187 11 5 chrX 96460899 96462645 -66137285 - L1PB1 LINE L1 -1 6866 5090 261 0 0 0 chrX 96462645 96462674 -66137256 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 11767 187 11 5 chrX 96462674 96464368 -66135562 - L1PB1 LINE L1 -1777 5090 3408 7259 186 24 7 chrX 96464368 96466600 -66133330 + L1PA13 LINE L1 3895 6159 -4 3382 196 13 14 chrX 96466610 96467751 -66132179 + L1M1 LINE L1 3217 4360 -3205 * 8697 188 63 5 chrX 96467732 96470876 -66129054 - L1PB1 LINE L1 -3386 3476 6 2779 289 51 25 chrX 96471310 96471485 -66128445 + L1MEc LINE L1 70 239 -5976 2118 122 54 23 chrX 96471485 96471838 -66128092 + THE1B LTR MaLR 1 364 0 2779 289 51 25 chrX 96471838 96471957 -66127973 + L1MEc LINE L1 239 353 -5862 216 0 0 0 chrX 96471957 96471981 -66127949 + (GA)n Simple_repeat Simple_repeat 2 25 0 2779 289 51 25 chrX 96471981 96472982 -66126948 + L1MEc LINE L1 353 1362 -4853 2182 228 109 45 chrX 96472981 96473298 -66126632 + L1M1 LINE L1 2857 3152 -4413 * 1528 201 16 43 chrX 96473298 96473671 -66126259 + MLT1A1 LTR MaLR 3 365 0 2182 228 109 45 chrX 96473671 96474092 -66125838 + L1M1 LINE L1 3152 3545 -4020 13304 49 6 2 chrX 96474092 96476535 -66123395 + L1PA5 LINE L1 3693 6148 -6 2182 228 109 45 chrX 96476535 96477244 -66122686 + L1M1 LINE L1 3545 4451 -3114 758 305 26 4 chrX 96477242 96477565 -66122365 + L1ME1 LINE L1 5766 6099 -79 * 307 393 40 24 chrX 96477658 96477910 -66122020 - MIR SINE MIR 0 262 7 2333 31 42 10 chrX 96479152 96479441 -66120489 + AluY SINE Alu 2 299 -12 3613 136 11 14 chrX 96479511 96480078 -66119852 - MER7C DNA MER2_type 0 602 38 21 57 0 0 chrX 96480972 96481007 -66118923 + AT_rich Low_complexity Low_complexity 1 35 0 967 86 29 0 chrX 96481055 96481195 -66118735 + L1MA3 LINE L1 6162 6305 0 279 0 0 0 chrX 96482041 96482072 -66117858 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chrX 96482954 96482984 -66116946 + AT_rich Low_complexity Low_complexity 1 30 0 351 252 106 19 chrX 96483305 96483431 -66116499 + L1ME LINE L1 5654 5792 -378 973 134 13 0 chrX 96483433 96483582 -66116348 + MSTA LTR MaLR 1 151 -277 183 129 0 0 chrX 96483619 96483650 -66116280 + (TA)n Simple_repeat Simple_repeat 2 32 0 5370 141 30 19 chrX 96483804 96484760 -66115170 + L1MA5 LINE L1 5333 6299 -1 21 0 0 0 chrX 96485122 96485143 -66114787 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chrX 96485640 96485685 -66114245 + AT_rich Low_complexity Low_complexity 1 45 0 430 284 96 36 chrX 96485727 96486030 -66113900 + MLT1I LTR MaLR 70 390 -19 702 262 56 75 chrX 96486109 96486985 -66112945 - L1MEd LINE L1 -741 1749 783 1455 174 0 0 chrX 96487040 96487287 -66112643 - L1PB4 LINE L1 -1 6155 5909 318 380 17 6 chrX 96487354 96487533 -66112397 - L1MEd LINE L1 -5934 185 5 1341 301 108 35 chrX 96487547 96489270 -66110660 - L1MEc LINE L1 -2306 3909 2102 664 299 106 53 chrX 96489446 96490308 -66109622 - L1MEc LINE L1 -4971 1234 328 1725 300 49 19 chrX 96492452 96492986 -66106944 - MLT1E LTR MaLR -14 579 30 849 287 74 45 chrX 96494028 96494718 -66105212 + L1M4 LINE L1 3438 4147 -1999 226 242 32 16 chrX 96494732 96494794 -66105136 + L1MA2 LINE L1 9 71 -7494 10666 213 48 6 chrX 96494809 96496903 -66103027 + L1MA2 LINE L1 157 2338 -5227 7773 31 3 1 chrX 96496895 96497858 -66102072 - L1P LINE L1 -2341 3805 2841 * 8444 24 0 0 chrX 96497858 96499623 -66100307 + L1PA3 LINE L1 4391 6155 0 13268 161 50 23 chrX 96499666 96500198 -66099732 + L1MA2 LINE L1 2319 2835 -4888 2725 103 0 5 chrX 96500198 96500575 -66099355 + THE1C LTR MaLR 1 375 0 9650 120 32 46 chrX 96500575 96502177 -66097753 + THE1C-int LTR MaLR 1 1580 0 2770 98 0 3 chrX 96502177 96502553 -66097377 + THE1C LTR MaLR 1 375 0 13268 161 50 23 chrX 96502553 96507279 -66092651 + L1MA2 LINE L1 2834 7719 -4 28 48 0 0 chrX 96507299 96507341 -66092589 + AT_rich Low_complexity Low_complexity 1 42 0 379 265 144 36 chrX 96507349 96507891 -66092039 + L1M4 LINE L1 4165 4769 -1377 493 192 10 0 chrX 96508067 96508171 -66091759 + L1MD1 LINE L1 6125 6229 -13 343 250 14 21 chrX 96508362 96508506 -66091424 + L1M4 LINE L1 4917 5059 -1087 24 32 0 0 chrX 96508535 96508566 -66091364 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chrX 96508611 96508652 -66091278 + AT_rich Low_complexity Low_complexity 1 41 0 4490 111 0 5 chrX 96508792 96509442 -66090488 - L1PA11 LINE L1 0 6174 5528 29 28 0 0 chrX 96509683 96509719 -66090211 + AT_rich Low_complexity Low_complexity 1 36 0 7024 105 5 0 chrX 96510773 96512585 -66087345 + L1PA7 LINE L1 4342 6154 0 31 0 0 0 chrX 96512771 96512802 -66087128 + AT_rich Low_complexity Low_complexity 1 31 0 23769 171 24 19 chrX 96513799 96520151 -66079779 + L1PA10 LINE L1 10 6477 -6 315 0 0 0 chrX 96521328 96521363 -66078567 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2661 253 34 34 chrX 96521908 96522196 -66077734 + L1M4 LINE L1 3035 3322 -2824 2081 139 10 0 chrX 96522196 96522505 -66077425 + AluSx SINE Alu 1 312 0 2661 253 34 34 chrX 96522505 96523036 -66076894 + L1M4 LINE L1 3322 3857 -2289 941 189 59 145 chrX 96523036 96523443 -66076487 - MLT1A2 LTR MaLR 0 374 3 2661 253 34 34 chrX 96523443 96523676 -66076254 + L1M4 LINE L1 3856 4088 -2058 1988 177 16 44 chrX 96523676 96524251 -66075679 + L1MA8 LINE L1 5749 6290 -22 1402 232 34 3 chrX 96524265 96524649 -66075281 + L1M4 LINE L1 4076 4471 -1675 1299 296 51 65 chrX 96524841 96525662 -66074268 - L2 LINE L2 -1 3312 2484 2241 169 23 29 chrX 96525662 96526140 -66073790 + L1PB1 LINE L1 3613 4087 -2059 1076 101 42 65 chrX 96526140 96526357 -66073573 + L1MB8 LINE L1 5934 6145 -33 4576 171 16 10 chrX 96526357 96526402 -66073528 + L1MA10 LINE L1 5444 5487 -847 462 36 0 0 chrX 96526402 96526458 -66073472 + (GA)n Simple_repeat Simple_repeat 2 57 0 4576 171 16 10 chrX 96526458 96527297 -66072633 + L1MA10 LINE L1 5487 6333 -1 203 269 19 0 chrX 96527298 96527350 -66072580 - L2 LINE L2 -841 2473 2421 247 320 10 48 chrX 96528244 96528347 -66071583 - MIR SINE MIR -64 144 46 8020 128 7 27 chrX 96529096 96529807 -66070123 - HSMAR2 DNA Mariner -3 1299 626 2576 44 0 25 chrX 96529807 96530123 -66069807 - AluY SINE Alu -3 308 1 8020 128 7 27 chrX 96530123 96530735 -66069195 - HSMAR2 DNA Mariner -676 626 3 2661 137 76 8 chrX 96533245 96533719 -66066211 + MER84 LTR ERV1 2 507 0 1926 122 36 4 chrX 96533950 96534228 -66065702 - AluSx SINE Alu -25 287 1 256 297 11 33 chrX 96534243 96534334 -66065596 + L2 LINE L2 3184 3272 0 741 127 0 0 chrX 96534500 96534610 -66065320 - LTR8 LTR ERV1 0 691 582 4198 195 61 23 chrX 96534661 96535736 -66064194 - L1PBa LINE L1 -5700 1163 6 5174 167 7 4 chrX 96535745 96537324 -66062606 + L1PB1 LINE L1 4201 5784 -367 238 130 0 0 chrX 96537324 96537370 -66062560 + LTR66 LTR ERVL 394 439 -171 468 208 0 0 chrX 96537372 96537473 -66062457 + (CATA)n Simple_repeat Simple_repeat 2 102 0 2294 123 0 39 chrX 96537473 96537854 -66062076 + L1PB1 LINE L1 5782 6147 -4 4367 79 31 12 chrX 96537879 96538484 -66061446 - LTR8 LTR ERV1 -74 617 1 251 341 39 50 chrX 96539320 96539578 -66060352 + MIR SINE MIR 8 262 0 216 182 0 0 chrX 96539578 96539622 -66060308 + (CTA)n Simple_repeat Simple_repeat 3 46 0 2175 176 45 33 chrX 96539826 96540251 -66059679 - MSTB1 LTR MaLR 0 432 3 317 295 128 60 chrX 96541229 96541463 -66058467 - MIR SINE MIR -10 252 3 213 274 0 0 chrX 96542083 96542134 -66057796 + L2 LINE L2 3251 3301 -12 380 303 34 45 chrX 96547408 96547586 -66052344 + MIR SINE MIR 46 221 -41 24 0 0 0 chrX 96548836 96548860 -66051070 + AT_rich Low_complexity Low_complexity 1 24 0 210 37 0 0 chrX 96548936 96548963 -66050967 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2292 96 0 0 chrX 96548966 96549257 -66050673 - AluSq SINE Alu -22 291 1 2268 87 3 0 chrX 96549784 96550070 -66049860 - AluSg SINE Alu -23 287 1 439 305 38 8 chrX 96551030 96551161 -66048769 - MIR SINE MIR -57 151 17 2147 173 19 131 chrX 96551305 96551847 -66048083 + MLT2B3 LTR ERVL 1 466 -88 396 0 0 0 chrX 96551847 96551891 -66048039 + (CA)n Simple_repeat Simple_repeat 1 44 0 2147 173 19 131 chrX 96551891 96551972 -66047958 + MLT2B3 LTR ERVL 466 554 0 434 287 66 17 chrX 96551999 96552157 -66047773 + MIR3 SINE MIR 2 167 -41 409 298 77 82 chrX 96552494 96552934 -66046996 - MLT1K LTR MaLR 0 588 151 379 311 60 30 chrX 96553193 96553723 -66046207 - L1M4 LINE L1 -743 5403 4858 744 278 71 23 chrX 96554512 96554899 -66045031 + L1ME4a LINE L1 5224 5634 -487 1820 230 59 36 chrX 96554899 96555241 -66044689 + LTR40a LTR ERVL 3 361 -158 234 91 0 0 chrX 96555241 96555274 -66044656 + (CA)n Simple_repeat Simple_repeat 2 34 0 1820 230 59 36 chrX 96555274 96555426 -66044504 + LTR40a LTR ERVL 361 508 -11 357 294 62 30 chrX 96555485 96555761 -66044169 + L1ME4a LINE L1 5676 5972 -149 336 24 0 0 chrX 96555761 96555802 -66044128 + (CA)n Simple_repeat Simple_repeat 1 41 0 357 294 62 30 chrX 96555802 96555957 -66043973 + L1ME4a LINE L1 5972 6121 0 21 0 0 0 chrX 96556376 96556397 -66043533 + AT_rich Low_complexity Low_complexity 1 21 0 223 401 37 16 chrX 96556569 96556756 -66043174 + L2 LINE L2 2892 3082 -190 192 377 151 9 chrX 96556788 96556894 -66043036 - L2 LINE L2 -1 3271 3151 271 361 49 8 chrX 96556934 96557056 -66042874 + L2 LINE L2 3137 3263 -9 252 0 0 0 chrX 96557369 96557397 -66042533 + (TG)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chrX 96557396 96557420 -66042510 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 225 171 0 0 chrX 96557969 96558010 -66041920 + CT-rich Low_complexity Low_complexity 1 41 0 225 0 0 0 chrX 96558011 96558036 -66041894 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 56 0 0 chrX 96558122 96558158 -66041772 + AT_rich Low_complexity Low_complexity 1 36 0 1979 122 3 3 chrX 96559474 96559761 -66040169 - AluSx SINE Alu -25 287 1 1221 244 72 28 chrX 96559785 96560286 -66039644 - L1ME4a LINE L1 -16 6105 5583 10207 92 0 1 chrX 96560287 96562483 -66037447 + L1PA7 LINE L1 3948 6143 -11 272 27 27 0 chrX 96562485 96562522 -66037408 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 488 267 17 9 chrX 96564511 96564627 -66035303 - L2 LINE L2 -4 3309 3193 553 331 147 29 chrX 96564949 96565290 -66034640 - L2 LINE L2 -21 3251 2871 188 309 41 89 chrX 96565346 96565469 -66034461 - L2 LINE L2 -564 2750 2634 372 302 124 0 chrX 96565780 96565909 -66034021 - L2 LINE L2 -44 3269 3125 882 277 22 38 chrX 96565974 96566292 -66033638 + MER83C LTR ERV1 49 361 -12 482 343 61 39 chrX 96566323 96566703 -66033227 - L2 LINE L2 -185 3128 2749 280 356 43 0 chrX 96567846 96567961 -66031969 - MIR SINE MIR -131 131 12 5438 179 36 48 chrX 96568238 96569827 -66030103 - L1PBa LINE L1 -2694 4168 2607 2060 114 13 0 chrX 96569830 96570137 -66029793 + L1PB2 LINE L1 5836 6146 -5 2162 181 42 43 chrX 96570448 96570977 -66028953 - LTR55 LTR ERV -11 537 10 2275 143 37 30 chrX 96571301 96571706 -66028224 + Tigger2a DNA MER2_type 1 408 -26 22 0 0 0 chrX 96571762 96571784 -66028146 + AT_rich Low_complexity Low_complexity 1 22 0 1347 54 0 0 chrX 96573826 96573993 -66025937 - L1P2 LINE L1 -426 5729 5563 1174 53 0 0 chrX 96573993 96574140 -66025790 + L1PA4 LINE L1 6004 6154 -1 752 231 151 68 chrX 96574157 96574494 -66025436 + MLT1A1 LTR MaLR 1 365 0 1840 91 0 0 chrX 96574977 96575218 -66024712 + AluSx SINE Alu 62 302 -10 285 302 23 0 chrX 96575460 96575589 -66024341 + L1ME LINE L1 5731 5862 -259 23 33 0 0 chrX 96575775 96575805 -66024125 + AT_rich Low_complexity Low_complexity 1 30 0 398 173 0 12 chrX 96576111 96576192 -66023738 - L1P LINE L1 -1516 4630 4551 * 4791 44 0 14 chrX 96576165 96576755 -66023175 + L1PA7 LINE L1 5562 6143 -11 223 332 85 30 chrX 96577072 96577271 -66022659 + L2 LINE L2 1039 1248 -2066 505 263 136 18 chrX 96578752 96578980 -66020950 - L2 LINE L2 0 3313 3059 243 0 0 0 chrX 96580929 96580956 -66018974 + (A)n Simple_repeat Simple_repeat 1 27 0 3803 59 6 8 chrX 96582642 96582712 -66017218 - L1PA7 LINE L1 -2 6152 6083 1537 112 0 0 chrX 96582712 96582927 -66017003 - AluSc SINE Alu 0 309 95 3803 59 6 8 chrX 96582927 96583361 -66016569 - L1PA7 LINE L1 -71 6083 5649 251 316 38 15 chrX 96583962 96584095 -66015835 + L2 LINE L2 2211 2346 -968 208 353 79 14 chrX 96584652 96584791 -66015139 + L2 LINE L2 2457 2604 -710 503 238 37 24 chrX 96584827 96584991 -66014939 - L1ME4a LINE L1 0 6121 5956 519 143 18 9 chrX 96585013 96585125 -66014805 + CT-rich Low_complexity Low_complexity 1 113 0 691 291 113 41 chrX 96585136 96585456 -66014474 - L2 LINE L2 -14 3299 2957 458 266 19 38 chrX 96585833 96585991 -66013939 + MLT1I LTR MaLR 240 394 -15 839 231 11 11 chrX 96585991 96586177 -66013753 - MER5A DNA MER1_type -1 188 3 368 292 62 96 chrX 96586211 96586598 -66013332 - L1M4 LINE L1 -1216 4930 4557 204 330 55 46 chrX 96586613 96586722 -66013208 + L2 LINE L2 2535 2644 -670 546 269 44 51 chrX 96587379 96587728 -66012202 - MLT1J2 LTR MaLR 0 450 69 485 240 16 8 chrX 96588612 96588733 -66011197 - MER94 DNA DNA -12 122 1 26 30 0 0 chrX 96589464 96589497 -66010433 + AT_rich Low_complexity Low_complexity 1 33 0 191 35 0 35 chrX 96589557 96589586 -66010344 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 231 36 0 0 chrX 96590465 96590493 -66009437 + (CA)n Simple_repeat Simple_repeat 1 28 0 358 256 215 7 chrX 96591044 96591187 -66008743 + MIR SINE MIR 38 204 -58 283 287 87 48 chrX 96591607 96591753 -66008177 - MLT1I LTR MaLR -244 165 66 1131 218 0 0 chrX 96592812 96593009 -66006921 - MER8 DNA MER2_type 0 239 43 3233 176 16 5 chrX 96593235 96593864 -66006066 - L1MB3 LINE L1 -3 6180 5545 195 42 0 0 chrX 96594243 96594267 -66005663 + (CA)n Simple_repeat Simple_repeat 2 25 0 2043 98 25 4 chrX 96594457 96594731 -66005199 - AluSq SINE Alu -13 300 21 320 206 0 0 chrX 96595334 96595402 -66004528 + LTR67 LTR ERVL 488 555 -2 26 30 0 0 chrX 96596065 96596098 -66003832 + AT_rich Low_complexity Low_complexity 1 33 0 713 279 82 10 chrX 96596256 96596464 -66003466 + MIR SINE MIR 27 249 -13 3538 49 2 7 chrX 96597940 96598391 -66001539 + L1PA4 LINE L1 5706 6154 -1 240 341 121 23 chrX 96598406 96598579 -66001351 + MIR SINE MIR 46 235 -27 218 330 33 22 chrX 96598565 96598656 -66001274 - MIR SINE MIR -169 93 2 * 315 286 143 0 chrX 96598791 96598924 -66001006 - MIR SINE MIR -21 241 90 234 158 0 0 chrX 96598928 96598966 -66000964 - U2 snRNA snRNA -150 38 1 2324 89 3 19 chrX 96599120 96599435 -66000495 - AluSp SINE Alu -1 312 3 239 106 0 0 chrX 96599708 96599755 -66000175 - L1MA3 LINE L1 -4 6301 6255 * 21963 155 25 21 chrX 96599736 96603161 -65996769 - L1 LINE L1 -2423 5142 1685 453 19 0 0 chrX 96603161 96603215 -65996715 + (TG)n Simple_repeat Simple_repeat 1 54 0 21963 155 25 21 chrX 96603215 96604884 -65995046 - L1 LINE L1 -5880 1685 25 657 259 124 25 chrX 96604940 96605222 -65994708 + L2 LINE L2 3004 3313 0 770 323 60 30 chrX 96605887 96606286 -65993644 + MLT1J LTR MaLR 99 509 -2 2073 152 22 50 chrX 96606314 96606715 -65993215 - MLT1B LTR MaLR 0 390 1 698 233 69 35 chrX 96607240 96607442 -65992488 - MER63A DNA MER1_type -1 209 1 405 269 195 0 chrX 96608237 96608386 -65991544 - MIR SINE MIR -26 236 59 385 340 42 38 chrX 96608472 96608663 -65991267 - MIR SINE MIR -59 203 8 596 283 55 40 chrX 96608987 96609259 -65990671 - L2 LINE L2 -19 3294 3019 208 200 73 0 chrX 96609425 96609480 -65990450 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 2172 146 73 10 chrX 96609982 96610394 -65989536 + L1PA16 LINE L1 5727 6164 -2 216 0 0 0 chrX 96611454 96611478 -65988452 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 248 196 143 0 chrX 96611507 96611563 -65988367 + MER5C DNA MER1_type 52 115 -209 22 56 0 0 chrX 96611857 96611893 -65988037 + AT_rich Low_complexity Low_complexity 1 36 0 253 215 13 38 chrX 96612587 96612666 -65987264 + GA-rich Low_complexity Low_complexity 5 81 0 2386 80 0 0 chrX 96613000 96613301 -65986629 + AluSg SINE Alu 1 301 -9 1080 140 0 0 chrX 96613301 96613490 -65986440 + AluSc SINE Alu 132 320 0 254 242 75 0 chrX 96613945 96614024 -65985906 + MIR SINE MIR 34 116 -92 496 368 65 23 chrX 96614184 96614570 -65985360 + L2 LINE L2 2460 2861 -453 409 330 76 49 chrX 96614619 96614883 -65985047 + L2 LINE L2 3016 3286 -27 347 285 53 53 chrX 96614874 96615025 -65984905 + MIR SINE MIR 26 176 -86 * 278 309 12 48 chrX 96615709 96615793 -65984137 + L2 LINE L2 3190 3270 -2 232 273 23 11 chrX 96616481 96616569 -65983361 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 2261 154 18 3 chrX 96617927 96618311 -65981619 - MLT1B LTR MaLR 0 390 1 210 71 0 0 chrX 96620356 96620384 -65979546 + (A)n Simple_repeat Simple_repeat 1 28 0 801 333 19 8 chrX 96621040 96621298 -65978632 - MIR SINE MIR -1 261 1 2215 107 7 3 chrX 96621910 96622220 -65977710 + AluSq SINE Alu 1 311 -2 512 147 0 11 chrX 96622220 96622315 -65977615 + (GGAAA)n Simple_repeat Simple_repeat 2 95 0 347 335 27 21 chrX 96622712 96622900 -65977030 + L2 LINE L2 2719 2907 -407 271 345 26 0 chrX 96622957 96623073 -65976857 + L2 LINE L2 2577 2695 -619 216 375 0 11 chrX 96623120 96623208 -65976722 + L2 LINE L2 2702 2788 -526 23 0 0 0 chrX 96623644 96623667 -65976263 + AT_rich Low_complexity Low_complexity 1 23 0 235 356 43 26 chrX 96624814 96624929 -65975001 - L2 LINE L2 0 3313 3197 351 312 39 28 chrX 96625945 96626125 -65973805 + MIR SINE MIR 36 216 -46 201 233 0 0 chrX 96626273 96626316 -65973614 + (CA)n Simple_repeat Simple_repeat 2 44 0 730 272 50 20 chrX 96628078 96628279 -65971651 + LTR16B LTR ERVL 17 223 -241 2731 189 36 4 chrX 96628279 96628776 -65971154 + MER54B LTR ERVL 1 513 -280 1960 150 3 3 chrX 96628776 96629103 -65970827 - L1M2 LINE L1 -520 5780 5454 450 137 0 7 chrX 96629618 96629709 -65970221 - L1M2 LINE L1 -723 5445 5355 297 284 91 40 chrX 96629760 96630056 -65969874 - L1MEc LINE L1 -4852 1544 1234 647 270 36 36 chrX 96630733 96630929 -65969001 - MLT1H LTR MaLR -282 267 72 528 248 37 50 chrX 96631003 96631221 -65968709 - LTR16B LTR ERVL -3 461 247 3340 307 37 28 chrX 96631224 96632771 -65967159 - HERV16 LTR ERVL -3251 1745 125 691 241 79 19 chrX 96632864 96633080 -65966850 - LTR16B LTR ERVL -2 462 234 1827 127 22 4 chrX 96633094 96633362 -65966568 - MER54B LTR ERVL 0 793 521 14471 136 35 8 chrX 96633368 96634908 -65965022 + Tigger1 DNA MER2_type 7 1636 -782 2120 83 69 0 chrX 96634908 96635185 -65964745 + AluSq SINE Alu 1 296 -17 14471 136 35 8 chrX 96635185 96635988 -65963942 + Tigger1 DNA MER2_type 1636 2415 -3 2730 130 14 62 chrX 96635989 96636549 -65963381 + L1MA9 LINE L1 5779 6311 -1 208 353 30 42 chrX 96636715 96636882 -65963048 - L2 LINE L2 -410 2904 2740 663 346 4 13 chrX 96637066 96637300 -65962630 - L3 LINE CR1 -387 1190 959 241 281 0 90 chrX 96637948 96638037 -65961893 - L2 LINE L2 -33 3239 3159 244 317 48 29 chrX 96639000 96639104 -65960826 - MIR SINE MIR -1 261 156 542 271 92 82 chrX 96640599 96640806 -65959124 - MIR SINE MIR -5 257 49 239 318 0 0 chrX 96640987 96641050 -65958880 + L2 LINE L2 3201 3263 -9 490 287 60 18 chrX 96643358 96643525 -65956405 - MIR SINE MIR -6 256 83 1843 158 3 3 chrX 96643885 96644189 -65955741 - AluJb SINE Alu -8 304 1 180 342 0 40 chrX 96644434 96644510 -65955420 + L2 LINE L2 3198 3270 -2 180 77 0 0 chrX 96644538 96644564 -65955366 + (CA)n Simple_repeat Simple_repeat 1 26 0 317 325 191 6 chrX 96645012 96645169 -65954761 + MIR3 SINE MIR 16 201 -7 642 301 140 28 chrX 96645794 96646499 -65953431 + L1ME4a LINE L1 5337 6120 -1 338 320 62 8 chrX 96646501 96646629 -65953301 + MIR SINE MIR 25 159 -103 431 307 107 28 chrX 96646933 96647148 -65952782 + Charlie8 DNA MER1_type 70 286 -2131 1041 199 19 4 chrX 96647468 96647724 -65952206 + L1MA4 LINE L1 6037 6296 -4 279 54 0 0 chrX 96647924 96647961 -65951969 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2466 113 5 24 chrX 96648678 96649049 -65950881 + THE1B LTR MaLR 1 364 0 9948 95 58 55 chrX 96649049 96650625 -65949305 + THE1B-int LTR MaLR 1 1580 0 2403 119 8 27 chrX 96650625 96650996 -65948934 + THE1B LTR MaLR 1 364 0 22 35 0 0 chrX 96651960 96651989 -65947941 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chrX 96652322 96652358 -65947572 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 56 0 0 chrX 96653196 96653232 -65946698 + AT_rich Low_complexity Low_complexity 1 36 0 232 363 0 18 chrX 96653262 96653375 -65946555 + L3 LINE CR1 899 1009 -568 669 315 17 39 chrX 96653591 96653823 -65946107 - MIR SINE MIR -26 236 10 4174 249 69 24 chrX 96653892 96655194 -65944736 + L1M4 LINE L1 24 1384 -5158 428 182 0 0 chrX 96655199 96655276 -65944654 + L1M4 LINE L1 3149 3225 -3419 * 8234 191 33 10 chrX 96655266 96656688 -65943242 + L1MA2 LINE L1 3153 4645 -2920 2382 53 3 0 chrX 96656688 96657001 -65942929 - AluY SINE Alu 0 314 1 8234 191 33 10 chrX 96657001 96657915 -65942015 + L1MA2 LINE L1 4645 5537 -2028 6655 122 16 6 chrX 96657926 96659046 -65940884 + L1MA2 LINE L1 6593 7723 0 2447 182 10 12 chrX 96659057 96659556 -65940374 + L1MB7 LINE L1 5679 6176 -8 738 167 0 0 chrX 96660124 96660238 -65939692 + FLAM_C SINE Alu 10 123 -20 315 239 0 0 chrX 96660269 96660317 -65939613 - L1MC4 LINE L1 -1337 6705 6655 261 0 0 0 chrX 96660317 96660346 -65939584 + (GA)n Simple_repeat Simple_repeat 2 30 0 315 239 0 0 chrX 96660346 96660368 -65939562 - L1MC4 LINE L1 -1386 6656 6635 687 236 0 0 chrX 96660369 96660513 -65939417 + FRAM SINE Alu 1 144 -32 596 167 13 26 chrX 96660515 96660671 -65939259 + GA-rich Low_complexity Low_complexity 4 157 0 230 196 65 0 chrX 96660684 96660791 -65939139 + GA-rich Low_complexity Low_complexity 2 115 0 323 77 0 0 chrX 96660927 96660966 -65938964 - tRNA-Thr-ACA tRNA tRNA -37 39 1 198 71 0 0 chrX 96660995 96661023 -65938907 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 316 272 7 88 chrX 96661428 96661575 -65938355 - MIR SINE MIR -50 212 78 423 0 0 0 chrX 96661909 96661956 -65937974 + (T)n Simple_repeat Simple_repeat 1 47 0 441 296 52 7 chrX 96662145 96662280 -65937650 + L3 LINE CR1 219 359 -1218 300 316 0 0 chrX 96662425 96662501 -65937429 - L2 LINE L2 -4 3268 3193 22 70 0 0 chrX 96662520 96662563 -65937367 + AT_rich Low_complexity Low_complexity 1 43 0 629 320 87 21 chrX 96662567 96663036 -65936894 - L1ME LINE L1 -304 5817 5318 289 375 0 0 chrX 96663319 96663423 -65936507 + L3 LINE CR1 364 467 -1110 22 0 0 0 chrX 96663490 96663512 -65936418 + AT_rich Low_complexity Low_complexity 1 22 0 484 316 139 17 chrX 96663512 96663806 -65936124 + L2 LINE L2 1991 2320 -994 290 402 73 39 chrX 96663950 96664306 -65935624 + L2 LINE L2 2903 3270 -2 248 229 0 0 chrX 96664299 96664347 -65935583 + L3 LINE CR1 463 510 -1067 * 365 322 53 35 chrX 96664363 96664534 -65935396 - MER5B DNA MER1_type -3 175 2 404 293 84 11 chrX 96664794 96664985 -65934945 + L1ME LINE L1 5599 5803 -318 22 0 0 0 chrX 96665057 96665079 -65934851 + AT_rich Low_complexity Low_complexity 1 22 0 784 269 69 5 chrX 96665144 96665360 -65934570 + MIR SINE MIR 3 232 -30 263 300 12 0 chrX 96665377 96665457 -65934473 - MIR SINE MIR -22 240 160 3126 114 28 14 chrX 96665640 96666133 -65933797 + L1PA13 LINE L1 5662 6161 -2 471 322 97 31 chrX 96666534 96666823 -65933107 + L2 LINE L2 3003 3310 -3 588 322 79 77 chrX 96667399 96667853 -65932077 + L3b LINE CR1 1111 1565 -18 2763 111 2 0 chrX 96668982 96669396 -65930534 - L1PA13 LINE L1 0 6163 5749 963 88 0 0 chrX 96671018 96671154 -65928776 + L1PB1 LINE L1 6016 6151 0 186 103 0 0 chrX 96672165 96672194 -65927736 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1337 197 194 47 chrX 96673360 96673543 -65926387 - L1MC3 LINE L1 -10 7775 7620 1497 206 13 27 chrX 96673543 96673844 -65926086 + AluJb SINE Alu 1 297 -15 1337 197 194 47 chrX 96673844 96674187 -65925743 - L1MC3 LINE L1 -165 7620 7172 1941 175 113 13 chrX 96674195 96674584 -65925346 - MSTA LTR MaLR 0 428 1 4919 187 186 27 chrX 96674584 96675946 -65923984 - MSTA-int LTR MaLR 0 1580 3 279 215 46 0 chrX 96675947 96676012 -65923918 - MLT1F1 LTR MaLR -462 105 38 1313 188 68 46 chrX 96676012 96676379 -65923551 - L1MD3 LINE L1 -684 7101 6727 2385 81 0 0 chrX 96676832 96677129 -65922801 + AluY SINE Alu 1 297 -14 7616 23 0 0 chrX 96677201 96678230 -65921700 - L1PA4 LINE L1 -3 6152 5125 477 34 0 0 chrX 96680164 96680223 -65919707 + (CA)n Simple_repeat Simple_repeat 2 60 0 231 188 21 0 chrX 96680229 96680277 -65919653 - MLT2B1 LTR ERVL -3 551 503 444 118 0 0 chrX 96680285 96680353 -65919577 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 2373 175 19 48 chrX 96680353 96680834 -65919096 - MLT2B1 LTR ERVL -42 478 12 1900 164 133 18 chrX 96680885 96681268 -65918662 + MSTA LTR MaLR 1 427 -1 8344 141 45 47 chrX 96681271 96682777 -65917153 + MSTA-int LTR MaLR 3 1506 -74 1395 187 176 10 chrX 96682777 96683102 -65916828 + MSTA LTR MaLR 58 428 0 2194 135 0 0 chrX 96683542 96683845 -65916085 + AluSx SINE Alu 3 305 -7 484 270 0 24 chrX 96684054 96684180 -65915750 + MIR3 SINE MIR 85 207 -1 44229 38 1 0 chrX 96684286 96690429 -65909501 + L1PA4 LINE L1 7 6155 0 198 0 0 0 chrX 96690438 96690460 -65909470 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 356 342 125 29 chrX 96691281 96691626 -65908304 + MLT1J2 LTR MaLR 73 450 0 513 310 12 58 chrX 96691850 96692092 -65907838 - LTR33 LTR ERVL 0 521 291 643 273 38 11 chrX 96692126 96692309 -65907621 - LTR33 LTR ERVL -330 191 4 353 337 97 40 chrX 96693607 96693936 -65905994 + L2 LINE L2 2366 2713 -601 213 121 0 0 chrX 96694698 96694731 -65905199 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 31 0 0 0 chrX 96695990 96696021 -65903909 + AT_rich Low_complexity Low_complexity 1 31 0 278 298 114 0 chrX 96696268 96696382 -65903548 - L2 LINE L2 -7 3306 3180 3876 114 6 0 chrX 96696743 96697267 -65902663 + MER1A DNA MER1_type 1 527 0 625 301 33 6 chrX 96697308 96697491 -65902439 + MIR3 SINE MIR 18 205 -3 2012 137 7 0 chrX 96699005 96699290 -65900640 - AluSx SINE Alu -25 287 1 499 302 80 17 chrX 96699290 96699468 -65900462 - MIR SINE MIR -62 146 5 1228 103 15 39 chrX 96699490 96699693 -65900237 + L1PA15 LINE L1 5960 6157 -8 2397 61 7 29 chrX 96701918 96702228 -65897702 - AluSg SINE Alu -7 303 1 252 325 41 77 chrX 96702257 96702503 -65897427 + L3 LINE CR1 733 969 -608 272 290 37 28 chrX 96702540 96702647 -65897283 - MIR SINE MIR -3 259 152 193 158 26 0 chrX 96703724 96703762 -65896168 + MIR SINE MIR 224 262 0 428 280 128 62 chrX 96704510 96704799 -65895131 - L3 LINE CR1 -7 1570 1263 414 57 0 0 chrX 96705423 96705476 -65894454 + (ATG)n Simple_repeat Simple_repeat 2 54 0 552 231 160 22 chrX 96705479 96705685 -65894245 - MIR SINE MIR -6 256 25 216 224 129 95 chrX 96706468 96706584 -65893346 + MIR SINE MIR 23 142 -120 195 221 35 0 chrX 96706584 96706670 -65893260 + (TA)n Simple_repeat Simple_repeat 2 90 0 23 33 0 0 chrX 96706679 96706709 -65893221 + AT_rich Low_complexity Low_complexity 1 30 0 387 0 0 0 chrX 96707076 96707119 -65892811 + (CA)n Simple_repeat Simple_repeat 2 44 0 521 202 81 0 chrX 96707634 96707733 -65892197 - MER81 DNA DNA -7 107 1 1303 148 78 34 chrX 96708067 96708325 -65891605 + L1PB4 LINE L1 5871 6141 -15 530 183 8 114 chrX 96708331 96708462 -65891468 + MER5B DNA MER1_type 61 177 -1 256 154 0 77 chrX 96709456 96709521 -65890409 + L1 LINE L1 4916 4975 -1171 388 78 0 0 chrX 96710215 96710272 -65889658 - MLT2D LTR ERVL 0 414 367 331 208 40 0 chrX 96710278 96710403 -65889527 + (TA)n Simple_repeat Simple_repeat 1 130 0 261 188 69 0 chrX 96710418 96710519 -65889411 + (TA)n Simple_repeat Simple_repeat 2 109 0 55 40 0 0 chrX 96710567 96710643 -65889287 + AT_rich Low_complexity Low_complexity 1 76 0 1557 228 95 31 chrX 96710643 96711094 -65888836 - MLT2B1 LTR ERVL -40 480 1 21 36 0 0 chrX 96711168 96711196 -65888734 + AT_rich Low_complexity Low_complexity 1 28 0 639 279 110 35 chrX 96712552 96713007 -65886923 + L1ME4a LINE L1 5452 5940 -181 840 219 20 133 chrX 96713959 96714416 -65885514 - MLT1I LTR MaLR -1 408 4 2357 138 40 30 chrX 96714416 96714844 -65885086 + MSTB1 LTR MaLR 1 432 0 504 300 143 14 chrX 96717805 96718015 -65881915 + MIR SINE MIR 20 256 -6 464 260 12 58 chrX 96719083 96719176 -65880754 + MLT1K LTR MaLR 420 503 -85 1845 184 28 8 chrX 96719176 96719534 -65880396 + MLT1A1 LTR MaLR 1 365 0 464 260 12 58 chrX 96719534 96719613 -65880317 + MLT1K LTR MaLR 503 584 -4 27 29 0 0 chrX 96719783 96719817 -65880113 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chrX 96719980 96720010 -65879920 + AT_rich Low_complexity Low_complexity 1 30 0 255 93 47 0 chrX 96720750 96720793 -65879137 + L1MCc LINE L1 1282 1326 -5097 831 286 75 75 chrX 96720793 96721187 -65878743 + L1MCc LINE L1 1656 2049 -5073 2312 82 0 25 chrX 96721187 96721502 -65878428 + AluSc SINE Alu 1 307 -2 831 286 75 75 chrX 96721502 96722313 -65877617 + L1MCc LINE L1 2049 3019 -4103 1439 232 60 50 chrX 96722439 96722977 -65876953 + L1ME3A LINE L1 5623 6165 -5 212 282 56 42 chrX 96723039 96723110 -65876820 - L2 LINE L2 0 3313 3242 1807 170 0 0 chrX 96723116 96723441 -65876489 + AluJo SINE Alu 1 325 0 18507 171 22 8 chrX 96724001 96729047 -65870883 + L1PA14 LINE L1 1 5443 -2156 1606 213 0 7 chrX 96729047 96729357 -65870573 + AluJb SINE Alu 1 308 -4 18507 171 22 8 chrX 96729357 96731545 -65868385 + L1PA14 LINE L1 5443 7598 -1 2244 130 19 3 chrX 96731545 96731903 -65868027 + L1MB3 LINE L1 5814 6181 -2 1719 212 61 20 chrX 96732636 96733080 -65866850 + LTR40b LTR ERVL 1 462 0 209 128 26 0 chrX 96733139 96733178 -65866752 + (TAA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chrX 96733731 96733754 -65866176 + AT_rich Low_complexity Low_complexity 1 23 0 2618 176 13 34 chrX 96733761 96734296 -65865634 + L1MD3 LINE L1 7462 7985 -10 2256 102 0 3 chrX 96736073 96736368 -65863562 + AluY SINE Alu 1 294 -17 300 161 0 0 chrX 96736518 96736580 -65863350 + (TTA)n Simple_repeat Simple_repeat 2 63 0 595 306 63 0 chrX 96736738 96736945 -65862985 + MIR SINE MIR 38 256 -6 261 182 45 0 chrX 96737099 96737165 -65862765 + (TA)n Simple_repeat Simple_repeat 1 69 0 1040 224 40 9 chrX 96737872 96738100 -65861830 + MIR SINE MIR 11 245 -17 2815 3 0 0 chrX 96738599 96738902 -65861028 + AluYa5 SINE Alu 1 303 -8 344 268 98 12 chrX 96739292 96739437 -65860493 - MIR SINE MIR -47 215 52 1057 277 46 35 chrX 96740266 96740634 -65859296 - L1MC4a LINE L1 -1929 5879 5508 1918 166 84 55 chrX 96740634 96741037 -65858893 + MSTA LTR MaLR 1 415 -13 637 247 130 14 chrX 96741049 96741445 -65858485 - L1MC4a LINE L1 -749 5397 5073 197 263 0 70 chrX 96741945 96742002 -65857928 + L3 LINE CR1 324 376 -1201 22 0 0 0 chrX 96742019 96742041 -65857889 + AT_rich Low_complexity Low_complexity 1 22 0 384 293 125 50 chrX 96742149 96742446 -65857484 + L3 LINE CR1 553 871 -706 306 277 0 32 chrX 96742793 96742887 -65857043 + GA-rich Low_complexity Low_complexity 1 91 0 14139 86 5 8 chrX 96742904 96744654 -65855276 - L1PA7 LINE L1 -3 6151 4404 2320 76 0 23 chrX 96744654 96744956 -65854974 - AluY SINE Alu -16 295 1 14139 86 5 8 chrX 96744956 96745963 -65853967 - L1PA7 LINE L1 -1750 4404 3396 25 0 0 0 chrX 96746238 96746263 -65853667 + AT_rich Low_complexity Low_complexity 1 25 0 354 263 121 5 chrX 96746508 96746698 -65853232 - L1ME4a LINE L1 -206 5915 5704 250 262 98 0 chrX 96746833 96746894 -65853036 - L1ME4a LINE L1 -543 5578 5512 230 308 120 0 chrX 96747239 96747372 -65852558 - L1MC4a LINE L1 -1083 5063 4915 209 260 0 50 chrX 96747852 96747952 -65851978 + GA-rich Low_complexity Low_complexity 3 97 0 244 307 0 0 chrX 96748338 96748413 -65851517 - L1PA13 LINE L1 -5088 1699 1625 1525 72 14 0 chrX 96748454 96748661 -65851269 + L1PA6 LINE L1 5943 6152 -2 1989 156 0 0 chrX 96748723 96749012 -65850918 - AluSx SINE Alu -22 290 2 1568 176 94 80 chrX 96749012 96749479 -65850451 + LTR54 LTR ERV1 18 478 -20 629 369 157 10 chrX 96749876 96750250 -65849680 - L2 LINE L2 -194 3078 2761 2473 73 84 0 chrX 96750250 96750605 -65849325 + L1PA13 LINE L1 5779 6163 0 629 369 157 10 chrX 96750605 96750955 -65848975 - L2 LINE L2 -511 2761 2233 211 250 0 0 chrX 96751557 96751601 -65848329 + T-rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chrX 96751924 96751958 -65847972 + AT_rich Low_complexity Low_complexity 1 34 0 1858 172 0 3 chrX 96752278 96752581 -65847349 + AluJb SINE Alu 11 312 0 307 343 0 34 chrX 96752590 96752736 -65847194 + L1ME4a LINE L1 5309 5449 -2359 846 259 79 25 chrX 96752780 96753147 -65846783 + L1ME4a LINE L1 5537 5923 -198 184 365 0 14 chrX 96754786 96754860 -65845070 + MIR SINE MIR 13 85 -177 240 35 0 0 chrX 96755186 96755215 -65844715 + (TG)n Simple_repeat Simple_repeat 2 30 0 2222 95 0 0 chrX 96755217 96755500 -65844430 - AluSx SINE Alu -29 283 1 1514 235 49 86 chrX 96755747 96756314 -65843616 + MLT1E LTR MaLR 48 593 0 235 241 205 0 chrX 96756421 96756504 -65843426 + MIR SINE MIR 51 150 -112 887 253 33 46 chrX 96756575 96756816 -65843114 - MIR SINE MIR -23 239 2 189 0 0 0 chrX 96757326 96757347 -65842583 + (A)n Simple_repeat Simple_repeat 1 21 0 243 326 70 23 chrX 96757421 96757550 -65842380 - L3b LINE CR1 -115 1468 1334 26 0 0 0 chrX 96757669 96757695 -65842235 + AT_rich Low_complexity Low_complexity 1 26 0 183 333 0 39 chrX 96757724 96757789 -65842141 + L2 LINE L2 3193 3256 -16 2287 116 3 0 chrX 96757789 96758100 -65841830 - AluSx SINE Alu 0 312 1 183 333 0 39 chrX 96758100 96758112 -65841818 + L2 LINE L2 3256 3267 -5 465 291 101 21 chrX 96758568 96758757 -65841173 + MIR SINE MIR 2 205 -57 235 282 36 36 chrX 96758909 96759019 -65840911 - L3 LINE CR1 -625 952 843 382 300 120 31 chrX 96760349 96760867 -65839063 + L1MC4a LINE L1 4736 5315 -831 910 283 59 10 chrX 96761107 96761414 -65838516 + MER102a DNA MER1_type 8 329 -1 261 338 0 0 chrX 96761969 96762046 -65837884 + L2 LINE L2 3186 3262 -10 235 372 113 16 chrX 96762055 96762375 -65837555 - L2 LINE L2 -976 2338 1988 490 289 49 58 chrX 96762585 96762893 -65837037 + L1MC4a LINE L1 5622 5926 -1882 215 315 77 94 chrX 96763088 96763428 -65836502 - L2 LINE L2 -1366 1948 1615 23 0 0 0 chrX 96763875 96763898 -65836032 + AT_rich Low_complexity Low_complexity 1 23 0 2515 246 17 23 chrX 96765081 96765728 -65834202 - MER82 DNA MER2_type -10 643 1 2243 291 83 21 chrX 96765973 96767604 -65832326 + L1MEc LINE L1 473 2205 -4191 584 234 35 12 chrX 96767596 96767852 -65832078 + L1MEc LINE L1 3152 3413 -2802 * 40859 34 22 1 chrX 96768559 96774586 -65825344 + L1PA2 LINE L1 1 6155 0 842 197 27 5 chrX 96774586 96774774 -65825156 + L1MB8 LINE L1 5936 6127 -51 2836 242 73 45 chrX 96774814 96775558 -65824372 + L1ME LINE L1 384 1106 -4974 1606 224 82 74 chrX 96775558 96776179 -65823751 - MLT1E2 LTR MaLR 0 626 1 2836 242 73 45 chrX 96776179 96777658 -65822272 + L1ME LINE L1 1106 2651 -3429 2783 82 19 0 chrX 96777659 96778024 -65821906 + THE1C LTR MaLR 1 372 -3 6396 140 108 8 chrX 96778029 96779476 -65820454 + THE1C-int LTR MaLR 3 1580 0 2595 111 3 13 chrX 96779476 96779855 -65820075 + THE1C LTR MaLR 1 375 0 3803 248 31 14 chrX 96779855 96781199 -65818731 + L1ME LINE L1 2648 4014 -2066 1226 244 65 24 chrX 96781196 96781734 -65818196 + L1ME LINE L1 4385 4944 -1136 * 5241 106 23 6 chrX 96781767 96782579 -65817351 - L1MA1 LINE L1 -12 6290 5465 1495 104 0 5 chrX 96782606 96782818 -65817112 + L1PA8 LINE L1 5956 6166 -6 240 35 0 0 chrX 96784174 96784203 -65815727 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1894 75 0 0 chrX 96784215 96784456 -65815474 - L1PA7 LINE L1 -13 6141 5901 5688 227 37 30 chrX 96785149 96787965 -65811965 - L1PA12 LINE L1 -4215 3369 6 5431 179 21 10 chrX 96787971 96789154 -65810776 - L1 LINE L1 -1818 5747 4552 2073 89 0 0 chrX 96789154 96789436 -65810494 - L1PA8 LINE L1 0 6172 5891 27349 128 16 57 chrX 96790472 96796637 -65803293 - L1PA8 LINE L1 -244 5910 12 6129 157 10 6 chrX 96796647 96798595 -65801335 - L1 LINE L1 -3001 4564 2570 837 226 5 0 chrX 96798611 96798801 -65801129 + L1M1 LINE L1 398 588 -6977 7715 16 6 2 chrX 96798801 96800246 -65799684 + L1PA2 LINE L1 4708 6155 0 1620 200 29 18 chrX 96800253 96800633 -65799297 - L1 LINE L1 -7170 395 12 2482 211 76 43 chrX 96800633 96800755 -65799175 + L1ME1 LINE L1 4996 5112 -1054 11328 25 0 0 chrX 96800755 96802859 -65797071 + L1PA2 LINE L1 4045 6151 -4 2482 211 76 43 chrX 96802859 96803861 -65796069 + L1ME1 LINE L1 5112 6161 -5 246 81 0 0 chrX 96804178 96804215 -65795715 + (CA)n Simple_repeat Simple_repeat 2 38 0 430 250 2 1 chrX 96804811 96804913 -65795017 + MIR SINE MIR 62 165 -43 192 77 0 0 chrX 96804915 96804941 -65794989 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 96806904 96806927 -65793003 + AT_rich Low_complexity Low_complexity 1 23 0 452 280 76 38 chrX 96807113 96807245 -65792685 - L2 LINE L2 0 3272 3136 540 272 95 0 chrX 96807554 96807701 -65792229 - L2 LINE L2 -1 3271 3111 1590 54 0 0 chrX 96810100 96810284 -65789646 - AluSc SINE Alu -100 209 26 537 211 60 54 chrX 96810895 96811061 -65788869 - MIR SINE MIR -10 252 86 2351 93 7 0 chrX 96811081 96811391 -65788539 - AluSx SINE Alu 0 312 1 1476 118 45 0 chrX 96811752 96811972 -65787958 - MER30 DNA MER1_type 0 230 1 779 188 81 92 chrX 96811982 96812080 -65787850 + MLT1B LTR MaLR 1 99 -291 1672 169 107 13 chrX 96812080 96812388 -65787542 - MER1B DNA MER1_type 0 337 1 779 188 81 92 chrX 96812388 96812457 -65787473 + MLT1B LTR MaLR 99 167 -223 2266 105 7 0 chrX 96812457 96812763 -65787167 + AluSx SINE Alu 1 308 -4 779 188 81 92 chrX 96812763 96812855 -65787075 + MLT1B LTR MaLR 167 258 -132 234 263 23 103 chrX 96812970 96813145 -65786785 - L2 LINE L2 -214 3058 2898 1222 176 35 27 chrX 96813658 96813914 -65786016 - THE1-int LTR MaLR -532 1048 791 1276 245 82 24 chrX 96814496 96814875 -65785055 - MLT1D LTR MaLR -18 487 87 558 160 8 42 chrX 96815152 96815271 -65784659 + MLT1C LTR MaLR 1 115 -352 2183 154 22 3 chrX 96815389 96815746 -65784184 - THE1B LTR MaLR 0 364 1 5047 119 1 1 chrX 96815746 96816496 -65783434 - THE1B-int LTR MaLR 0 1580 831 712 294 123 41 chrX 96818009 96818501 -65781429 + MLT1H1 LTR MaLR 23 578 -17 12335 178 4 26 chrX 96818605 96820823 -65779107 + L1PB1 LINE L1 2330 4427 -1724 2842 75 23 102 chrX 96820823 96821262 -65778668 + MLT2A1 LTR ERVL 1 400 -44 267 31 0 0 chrX 96821262 96821294 -65778636 + (TA)n Simple_repeat Simple_repeat 2 33 0 2842 75 23 102 chrX 96821294 96821336 -65778594 + MLT2A1 LTR ERVL 400 444 0 12335 178 4 26 chrX 96821336 96823024 -65776906 + L1PB1 LINE L1 4427 6150 -1 22 0 0 0 chrX 96823024 96823046 -65776884 + AT_rich Low_complexity Low_complexity 1 22 0 986 324 75 23 chrX 96823413 96824121 -65775809 + L2 LINE L2 2563 3312 -1 198 118 0 0 chrX 96824784 96824818 -65775112 + (CAT)n Simple_repeat Simple_repeat 1 34 0 193 306 30 97 chrX 96825503 96825637 -65774293 + L2 LINE L2 3179 3303 -10 280 317 8 89 chrX 96825995 96826118 -65773812 - L2 LINE L2 -3 3269 3157 234 133 108 0 chrX 96826134 96826217 -65773713 + (CTAAA)n Simple_repeat Simple_repeat 2 93 0 265 284 45 45 chrX 96826305 96826393 -65773537 - L2 LINE L2 -225 3047 2960 1178 172 14 46 chrX 96826447 96826865 -65773065 - MLT1D LTR MaLR -3 502 47 844 271 74 7 chrX 96826901 96827170 -65772760 - LTR33 LTR ERVL -234 287 1 249 274 44 35 chrX 96827170 96827283 -65772647 - L2 LINE L2 -517 2797 2684 509 250 51 61 chrX 96827781 96827977 -65771953 - L2 LINE L2 -2 3311 3118 1820 165 3 17 chrX 96828995 96829310 -65770620 + AluSx SINE Alu 1 311 0 865 271 65 1 chrX 96830193 96830426 -65769504 - MIR SINE MIR -15 247 2 1470 160 2 15 chrX 96830469 96830990 -65768940 + LTR60 LTR ERV1 1 586 0 446 207 24 138 chrX 96830822 96831112 -65768818 + TAR1 Satellite telomeric 35 291 -1820 * 242 28 0 28 chrX 96831305 96831341 -65768589 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 735 314 31 27 chrX 96831981 96832239 -65767691 + MIR SINE MIR 2 260 -2 1890 92 88 0 chrX 96832574 96832847 -65767083 + AluSq SINE Alu 1 297 -16 345 307 132 28 chrX 96833626 96833838 -65766092 - L2 LINE L2 0 3313 3080 1676 170 23 85 chrX 96836680 96837069 -65762861 + MLT1A1 LTR MaLR 1 365 0 5164 227 85 43 chrX 96837070 96838701 -65761229 + MLT1A1-int LTR MaLR 1 1700 -35 374 176 0 0 chrX 96838701 96838769 -65761161 + MLT1A1-int LTR MaLR 1668 1735 0 2151 154 3 14 chrX 96838769 96839138 -65760792 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chrX 96839168 96839197 -65760733 + AT_rich Low_complexity Low_complexity 1 29 0 957 239 177 3 chrX 96840121 96840443 -65759487 - LTR16C LTR ERVL -2 489 112 299 197 0 16 chrX 96840565 96840626 -65759304 + MER5A DNA MER1_type 30 89 -100 418 68 0 27 chrX 96840665 96840738 -65759192 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 578 268 56 52 chrX 96841606 96841819 -65758111 - MIR SINE MIR -30 232 19 679 390 39 17 chrX 96845352 96845996 -65753934 + L2 LINE L2 546 1203 -2111 2121 140 3 0 chrX 96846210 96846517 -65753413 - AluSx SINE Alu -4 308 1 188 294 0 0 chrX 96846616 96846667 -65753263 - MIR SINE MIR -65 143 93 621 316 16 16 chrX 96848731 96848921 -65751009 + MIR SINE MIR 2 191 -71 198 269 75 0 chrX 96848931 96848998 -65750932 - MIR SINE MIR -6 256 185 29911 104 13 57 chrX 96849002 96855426 -65744504 - L1PA7 LINE L1 -7 6147 13 452 212 51 34 chrX 96855453 96855571 -65744359 - MIR SINE MIR -141 121 2 544 257 86 7 chrX 96855696 96855848 -65744082 + MIR SINE MIR 20 183 -79 701 329 28 4 chrX 96857380 96857632 -65742298 - MIR SINE MIR -3 259 2 762 313 31 27 chrX 96857755 96858011 -65741919 + MIR SINE MIR 6 262 0 718 290 20 98 chrX 96859024 96859431 -65740499 + L2 LINE L2 2862 3236 -36 498 331 0 0 chrX 96859569 96859696 -65740234 + L2 LINE L2 3146 3272 0 1880 285 33 90 chrX 96859805 96860831 -65739099 + L3 LINE CR1 609 1576 -1 1232 93 49 0 chrX 96860859 96861042 -65738888 + MER30 DNA MER1_type 1 192 -38 5582 121 34 30 chrX 96861229 96861848 -65738082 + L1MA5 LINE L1 5163 5778 -522 665 82 0 0 chrX 96861851 96862165 -65737765 + AluSg SINE Alu 4 317 0 * 5582 121 34 30 chrX 96862132 96862675 -65737255 + L1MA5 LINE L1 5778 6300 0 2234 112 0 7 chrX 96862699 96863002 -65736928 + AluSx SINE Alu 1 301 -11 316 326 23 8 chrX 96863042 96863174 -65736756 + MIR SINE MIR 20 153 -109 248 98 137 0 chrX 96863500 96863551 -65736379 - L1PA16 LINE L1 -8 6158 6101 1668 84 0 12 chrX 96863572 96863821 -65736109 - L1P4 LINE L1 -560 5601 5356 427 162 8 0 chrX 96863821 96863921 -65736009 + L1P4 LINE L1 5248 5353 -793 5491 65 1 0 chrX 96864389 96865078 -65734852 + LTR8 LTR ERV1 1 690 -1 422 333 28 7 chrX 96865848 96865989 -65733941 + MIR3 SINE MIR 17 160 -48 201 234 0 21 chrX 96866311 96866358 -65733572 + MIR3 SINE MIR 154 199 -9 198 0 0 0 chrX 96866528 96866550 -65733380 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 360 77 0 0 chrX 96866763 96866815 -65733115 + (GA)n Simple_repeat Simple_repeat 2 53 0 433 248 7 36 chrX 96867846 96867983 -65731947 + MER94 DNA DNA 2 134 0 4816 120 17 30 chrX 96869441 96870281 -65729649 - L1MA4 LINE L1 -7 6293 5465 206 388 62 0 chrX 96870369 96870498 -65729432 + MIR3 SINE MIR 58 194 -14 376 284 97 3 chrX 96870591 96870709 -65729221 + MIR SINE MIR 24 150 -58 1848 173 3 23 chrX 96871044 96871391 -65728539 - MER58B DNA MER1_type 0 341 2 397 315 23 8 chrX 96871525 96871655 -65728275 + MIR SINE MIR 5 136 -126 944 280 47 6 chrX 96871657 96871975 -65727955 + L1MC4a LINE L1 5506 5836 -1972 281 213 107 0 chrX 96872073 96872148 -65727782 + MIR SINE MIR 139 221 -41 273 217 109 43 chrX 96872148 96872240 -65727690 + L2 LINE L2 3196 3293 -20 723 283 0 35 chrX 96872263 96872461 -65727469 + MIR SINE MIR 16 206 -56 826 274 55 5 chrX 96872483 96872702 -65727228 + LTR33 LTR ERVL 6 235 -286 448 254 109 0 chrX 96872783 96872921 -65727009 + LTR33 LTR ERVL 368 520 -1 205 182 0 0 chrX 96873405 96873438 -65726492 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 294 287 23 60 chrX 96873690 96873798 -65726132 + L1ME4a LINE L1 5757 5855 -266 1314 93 51 14 chrX 96873798 96874014 -65725916 + L1PA11 LINE L1 5947 6170 -4 294 287 23 60 chrX 96874014 96874121 -65725809 + L1ME4a LINE L1 5855 5964 -157 432 55 0 0 chrX 96874121 96874165 -65725765 + (TG)n Simple_repeat Simple_repeat 1 99 0 432 55 0 0 chrX 96874165 96874220 -65725710 + (TG)n Simple_repeat Simple_repeat 2 56 0 1527 215 64 26 chrX 96874240 96874631 -65725299 + MLT1D LTR MaLR 5 410 -95 234 213 0 16 chrX 96874762 96874823 -65725107 + (TA)n Simple_repeat Simple_repeat 2 61 0 189 0 0 0 chrX 96874823 96874844 -65725086 + (CA)n Simple_repeat Simple_repeat 2 22 0 311 264 11 0 chrX 96875184 96875275 -65724655 - L1MC/D LINE L1 -2013 5795 5704 6593 71 0 8 chrX 96875277 96876288 -65723642 + L1PA8A LINE L1 5127 6130 -1 4778 100 0 18 chrX 96876411 96877130 -65722800 - L1P3 LINE L1 -5755 706 1 925 277 100 79 chrX 96877203 96877579 -65722351 - L1MEd LINE L1 -952 1538 1171 237 33 0 0 chrX 96877579 96877609 -65722321 + (CA)n Simple_repeat Simple_repeat 2 31 0 925 277 100 79 chrX 96877609 96878429 -65721501 - L1MEd LINE L1 -1319 1171 214 2210 145 53 51 chrX 96878429 96878883 -65721047 - MSTB2 LTR MaLR -2 455 1 925 277 100 79 chrX 96878883 96879037 -65720893 - L1MEd LINE L1 -2276 214 65 259 266 128 17 chrX 96879350 96879558 -65720372 + L1ME LINE L1 5254 5486 -635 192 125 0 0 chrX 96879771 96879803 -65720127 + (TAA)n Simple_repeat Simple_repeat 2 33 0 856 228 25 39 chrX 96880374 96880615 -65719315 + MIR SINE MIR 11 251 -11 202 205 0 0 chrX 96881176 96881215 -65718715 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 278 260 240 58 chrX 96881328 96881482 -65718448 + MER5A DNA MER1_type 5 186 -3 4460 184 17 25 chrX 96881654 96881929 -65718001 + L1MA9 LINE L1 4826 5102 -1210 204 40 0 0 chrX 96881929 96881954 -65717976 + (CA)n Simple_repeat Simple_repeat 2 26 0 4460 184 17 25 chrX 96881954 96883071 -65716859 + L1MA9 LINE L1 5102 6205 -107 2525 134 35 28 chrX 96883071 96883116 -65716814 - MSTA LTR MaLR 0 428 385 2520 47 0 10 chrX 96883116 96883417 -65716513 + AluY SINE Alu 1 298 -13 2525 134 35 28 chrX 96883417 96883796 -65716134 - MSTA LTR MaLR -43 385 1 4460 184 17 25 chrX 96883796 96883866 -65716064 + L1MA9 LINE L1 6205 6274 -38 485 260 112 18 chrX 96883903 96884072 -65715858 + MIR SINE MIR 75 259 -3 352 224 9 86 chrX 96884161 96884277 -65715653 + L2 LINE L2 3196 3302 -11 805 283 58 18 chrX 96884624 96884900 -65715030 - L3 LINE CR1 -66 1511 1225 231 383 63 18 chrX 96885749 96885971 -65713959 + L2 LINE L2 2865 3096 -176 312 219 134 12 chrX 96886132 96886214 -65713716 - L2 LINE L2 -4 3309 3218 820 227 13 40 chrX 96886281 96886506 -65713424 - L2 LINE L2 -856 2458 2240 202 353 0 39 chrX 96887417 96887519 -65712411 + L2 LINE L2 3007 3104 -168 1947 120 0 31 chrX 96887613 96887905 -65712025 + AluSg SINE Alu 15 297 -13 279 287 58 0 chrX 96888839 96888926 -65711004 - MIR3 SINE MIR -14 194 103 550 65 13 0 chrX 96889415 96889492 -65710438 - MADE1 DNA Mariner -2 78 1 386 253 233 0 chrX 96889668 96889814 -65710116 + MLT1L LTR MaLR 1 180 -435 1866 206 31 35 chrX 96889889 96890345 -65709585 - LTR40b LTR ERVL -5 457 4 18961 182 19 25 chrX 96890428 96891300 -65708630 + L1PA13 LINE L1 1128 2004 -4793 2573 63 0 0 chrX 96891300 96891602 -65708328 + AluY SINE Alu 1 302 -9 18961 182 19 25 chrX 96891602 96895673 -65704257 + L1PA13 LINE L1 2004 6053 -744 42236 35 2 2 chrX 96895673 96901839 -65698091 + L1PA3 LINE L1 8 6155 0 4967 109 4 5 chrX 96901834 96902610 -65697320 + L1PA13 LINE L1 6039 6813 -1 * 26 0 0 0 chrX 96902611 96902637 -65697293 + AT_rich Low_complexity Low_complexity 1 26 0 588 321 27 14 chrX 96903022 96903243 -65696687 + MIR SINE MIR 37 260 -2 1338 286 78 24 chrX 96903489 96904191 -65695739 - L1ME4a LINE L1 -4 6117 5378 224 280 13 0 chrX 96905846 96905921 -65694009 + (AATTG)n Simple_repeat Simple_repeat 3 78 0 12215 113 14 51 chrX 96906712 96909747 -65690183 + L1PA7 LINE L1 2 3055 -3406 * 13455 82 13 1 chrX 96909740 96912558 -65687372 + L1PA7 LINE L1 3616 6468 -1 2728 207 50 23 chrX 96912872 96914320 -65685610 + L1MD2 LINE L1 4739 6343 -16 284 283 28 47 chrX 96915421 96915525 -65684405 + MER5B DNA MER1_type 8 109 -69 923 258 39 16 chrX 96915525 96915781 -65684149 + MIR SINE MIR 1 262 0 364 339 0 15 chrX 96918781 96918911 -65681019 - MIR SINE MIR -133 129 2 2182 106 3 0 chrX 96918969 96919261 -65680669 + AluSx SINE Alu 1 293 -19 479 292 7 14 chrX 96919571 96919715 -65680215 + MIR SINE MIR 117 259 -3 489 303 109 0 chrX 96919814 96919979 -65679951 + MIR SINE MIR 2 184 -78 452 304 9 0 chrX 96919980 96920092 -65679838 + L2 LINE L2 3193 3305 -8 325 275 0 12 chrX 96920153 96920233 -65679697 + L2 LINE L2 3194 3272 0 2519 62 0 3 chrX 96920387 96920696 -65679234 - AluY SINE Alu -3 308 1 34 0 0 0 chrX 96920813 96920847 -65679083 + AT_rich Low_complexity Low_complexity 1 34 0 11912 150 25 5 chrX 96920847 96924233 -65675697 - L1MA2 LINE L1 0 7723 4268 773 230 10 0 chrX 96924371 96924575 -65675355 + L1 LINE L1 4189 4394 -1752 * 1182 208 27 17 chrX 96924572 96924866 -65675064 - L1MA2 LINE L1 -7254 311 15 324 215 15 133 chrX 96924876 96925011 -65674919 - L2 LINE L2 -6 3307 3189 313 222 69 14 chrX 96925011 96925083 -65674847 + MIR3 SINE MIR 108 183 -25 819 296 61 8 chrX 96925092 96925282 -65674648 + MIR SINE MIR 3 210 -52 180 0 0 0 chrX 96925282 96925302 -65674628 + (TA)n Simple_repeat Simple_repeat 2 21 0 819 296 61 8 chrX 96925302 96925358 -65674572 + MIR SINE MIR 210 262 0 192 97 0 0 chrX 96926190 96926221 -65673709 + (CA)n Simple_repeat Simple_repeat 1 31 0 266 185 22 33 chrX 96926854 96926946 -65672984 + L1MC5 LINE L1 7827 7917 -44 506 206 0 0 chrX 96927614 96927711 -65672219 + L2 LINE L2 2548 2644 -670 1464 208 31 3 chrX 96927717 96928107 -65671823 - L1 LINE L1 -1557 4589 4189 537 226 0 0 chrX 96928328 96928430 -65671500 + MER58B DNA MER1_type 240 341 0 471 233 67 0 chrX 96928436 96928586 -65671344 - MER112 DNA MER1_type -99 161 2 618 291 63 5 chrX 96928586 96928809 -65671121 - L2 LINE L2 -513 2801 2566 635 263 82 16 chrX 96930025 96930219 -65669711 + MIR SINE MIR 49 255 -7 22 0 0 0 chrX 96934473 96934495 -65665435 + AT_rich Low_complexity Low_complexity 1 22 0 226 115 39 0 chrX 96938341 96938393 -65661537 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chrX 96940622 96940643 -65659287 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 96941270 96941291 -65658639 + AT_rich Low_complexity Low_complexity 1 21 0 617 249 91 87 chrX 96942164 96942625 -65657305 + MLT1J LTR MaLR 5 467 -44 221 356 14 14 chrX 96942685 96942758 -65657172 + L2 LINE L2 3001 3073 -199 388 157 0 14 chrX 96942805 96942875 -65657055 + Tigger2 DNA MER2_type 4 72 -2646 706 241 0 64 chrX 96942911 96943098 -65656832 - MER8 DNA MER2_type -64 175 1 192 372 93 16 chrX 96943107 96943236 -65656694 + L2 LINE L2 3133 3271 -1 479 93 0 13 chrX 96943626 96943701 -65656229 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 13626 175 34 7 chrX 96944400 96949511 -65650419 + L1PB1 LINE L1 1090 6519 -348 243 0 0 0 chrX 96949511 96949538 -65650392 + (CA)n Simple_repeat Simple_repeat 1 27 0 13626 175 34 7 chrX 96949538 96949896 -65650034 + L1PB1 LINE L1 6519 6866 -1 33 25 0 0 chrX 96951179 96951219 -65648711 + AT_rich Low_complexity Low_complexity 1 40 0 1091 196 82 61 chrX 96951223 96951503 -65648427 - AluJo SINE Alu -16 286 1 26 0 0 0 chrX 96952109 96952135 -65647795 + AT_rich Low_complexity Low_complexity 1 26 0 271 44 44 0 chrX 96952462 96952507 -65647423 + (GA)n Simple_repeat Simple_repeat 1 47 0 450 0 0 0 chrX 96954215 96954265 -65645665 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chrX 96957948 96957970 -65641960 + AT_rich Low_complexity Low_complexity 1 22 0 466 226 74 58 chrX 96958492 96958749 -65641181 + MIR SINE MIR 2 262 0 481 299 81 9 chrX 96960606 96960785 -65639145 - MIR3 SINE MIR -13 195 4 5743 150 17 17 chrX 96961147 96962135 -65637795 - L1PB1 LINE L1 -1 6150 5164 2688 45 0 0 chrX 96962135 96962445 -65637485 - AluY SINE Alu -1 310 1 5743 150 17 17 chrX 96962445 96963190 -65636740 - L1PB1 LINE L1 -987 5164 4400 297 0 0 0 chrX 96963190 96963223 -65636707 + (TA)n Simple_repeat Simple_repeat 1 33 0 5743 150 17 17 chrX 96963223 96963345 -65636585 - L1PB1 LINE L1 -1751 4400 4280 685 255 0 12 chrX 96965159 96965320 -65634610 - MIR SINE MIR -15 247 89 447 19 0 0 chrX 96965482 96965534 -65634396 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 210 380 79 0 chrX 96965575 96965687 -65634243 - MIR SINE MIR -82 126 32 2496 64 3 0 chrX 96965726 96966024 -65633906 - AluSg SINE Alu -11 299 1 486 305 99 22 chrX 96967553 96967776 -65632154 - MIR SINE MIR -21 241 2 2217 92 0 13 chrX 96969984 96970290 -65629640 + AluSg SINE Alu 1 302 -8 1893 146 36 60 chrX 96971899 96972283 -65627647 + THE1C LTR MaLR 1 375 0 2272 86 24 0 chrX 96972596 96972887 -65627043 + AluSx SINE Alu 1 298 -14 1753 159 47 10 chrX 96973086 96973387 -65626543 + AluJo SINE Alu 1 312 0 975 183 5 0 chrX 96973388 96973607 -65626323 + GA-rich Low_complexity Low_complexity 1 220 0 2218 140 0 6 chrX 96974132 96974446 -65625484 - AluSx SINE Alu 0 312 1 24 32 0 0 chrX 96974455 96974486 -65625444 + AT_rich Low_complexity Low_complexity 1 31 0 524 129 21 0 chrX 96974600 96974693 -65625237 + L1MA6 LINE L1 6105 6199 -101 275 70 0 23 chrX 96975112 96975155 -65624775 + (TG)n Simple_repeat Simple_repeat 2 43 0 318 217 193 0 chrX 96975162 96975245 -65624685 - L1MC4 LINE L1 -1339 6703 6605 211 163 61 0 chrX 96976101 96976150 -65623780 + L2 LINE L2 3262 3313 0 1266 162 8 4 chrX 96978073 96978308 -65621622 + L1MA6 LINE L1 6065 6300 0 2441 62 0 7 chrX 96978415 96978721 -65621209 + AluY SINE Alu 1 304 -7 1320 119 0 0 chrX 96978723 96978900 -65621030 + AluSg/x SINE Alu 128 304 -8 222 118 0 0 chrX 96980265 96980299 -65619631 + (TG)n Simple_repeat Simple_repeat 2 35 0 227 208 21 0 chrX 96980549 96980597 -65619333 + (CATA)n Simple_repeat Simple_repeat 2 50 0 845 235 19 45 chrX 96982768 96983036 -65616894 - MIR SINE MIR 0 262 2 2663 177 39 25 chrX 96983215 96983728 -65616202 + MLT2B1 LTR ERVL 1 520 0 842 185 120 25 chrX 96985093 96985293 -65614637 - MER20 DNA MER1_type 0 219 1 482 290 118 34 chrX 96985311 96985549 -65614381 + MIR SINE MIR 5 262 0 439 239 254 14 chrX 96986762 96986904 -65613026 + MER5A DNA MER1_type 14 189 0 306 310 0 0 chrX 96986969 96987040 -65612890 - L2 LINE L2 0 3272 3202 485 273 0 0 chrX 96987550 96987671 -65612259 + LTR33 LTR ERVL 100 220 -301 425 200 23 46 chrX 96987794 96987924 -65612006 + LTR33 LTR ERVL 392 518 -3 2390 105 0 10 chrX 96988135 96988449 -65611481 + AluSx SINE Alu 1 311 -1 26 0 0 0 chrX 96989259 96989285 -65610645 + AT_rich Low_complexity Low_complexity 1 26 0 620 191 0 0 chrX 96989318 96989428 -65610502 - FLAM_C SINE Alu -32 111 2 377 202 32 0 chrX 96990783 96990877 -65609053 + L1ME4a LINE L1 5991 6087 -34 225 329 55 14 chrX 96992167 96992240 -65607690 - L2 LINE L2 -86 3186 3111 2859 119 9 14 chrX 96992834 96993264 -65606666 + MSTA LTR MaLR 1 428 0 418 242 6 0 chrX 96993314 96993417 -65606513 + MIR SINE MIR 79 183 -25 256 290 0 0 chrX 96994399 96994461 -65605469 - tRNA-Ile-ATT tRNA tRNA -15 62 1 590 248 0 119 chrX 96994671 96994873 -65605057 - MER5B DNA MER1_type 0 178 1 273 75 0 0 chrX 96997159 96997199 -65602731 + (CA)n Simple_repeat Simple_repeat 1 40 0 459 328 21 21 chrX 96997202 96997391 -65602539 + MIR3 SINE MIR 14 202 -6 792 183 0 0 chrX 96999991 97000122 -65599808 + FLAM_C SINE Alu 1 131 -2 248 170 19 0 chrX 97000122 97000175 -65599755 + (TA)n Simple_repeat Simple_repeat 1 54 0 324 48 0 0 chrX 97000178 97000220 -65599710 + (TG)n Simple_repeat Simple_repeat 2 43 0 259 315 102 25 chrX 97001989 97002186 -65597744 - MIR SINE MIR -47 215 4 2319 70 3 17 chrX 97002897 97003197 -65596733 + AluY SINE Alu 1 296 -15 351 266 0 0 chrX 97003328 97003407 -65596523 + MIR SINE MIR 73 151 -111 2343 77 10 3 chrX 97003409 97003706 -65596224 + AluSq SINE Alu 1 299 -14 411 114 70 6 chrX 97004001 97004159 -65595771 + (TA)n Simple_repeat Simple_repeat 1 168 0 318 50 0 0 chrX 97004233 97004273 -65595657 + (TG)n Simple_repeat Simple_repeat 1 40 0 207 100 0 0 chrX 97004273 97004303 -65595627 + (GA)n Simple_repeat Simple_repeat 2 31 0 1058 162 35 10 chrX 97004695 97004893 -65595037 - MER3 DNA MER1_type -2 207 5 294 314 66 25 chrX 97005022 97005143 -65594787 + L2 LINE L2 3141 3266 -6 307 310 85 16 chrX 97005599 97005728 -65594202 - MIR3 SINE MIR -60 148 11 28 48 0 0 chrX 97005818 97005860 -65594070 + AT_rich Low_complexity Low_complexity 1 42 0 266 252 92 61 chrX 97006124 97006255 -65593675 - MIR3 SINE MIR -66 142 8 446 321 62 12 chrX 97007581 97007743 -65592187 - L2 LINE L2 -1 3271 3102 1451 191 5 110 chrX 97007757 97008165 -65591765 - MLT1A1 LTR MaLR 0 365 1 198 103 0 0 chrX 97009464 97009493 -65590437 + (TTA)n Simple_repeat Simple_repeat 1 29 0 744 315 9 5 chrX 97010089 97010308 -65589622 - L3 LINE CR1 -389 1188 969 438 94 0 0 chrX 97011368 97011432 -65588498 + (TG)n Simple_repeat Simple_repeat 2 65 0 200 388 61 0 chrX 97011742 97011840 -65588090 + L2 LINE L2 3117 3220 -52 777 250 28 36 chrX 97011940 97012188 -65587742 + L2 LINE L2 3034 3279 -34 336 24 0 0 chrX 97012235 97012276 -65587654 + (CA)n Simple_repeat Simple_repeat 2 42 0 2084 139 3 0 chrX 97012340 97012641 -65587289 + AluSx SINE Alu 1 302 -10 526 302 114 7 chrX 97013138 97013358 -65586572 + MIR SINE MIR 10 248 -14 2209 94 27 0 chrX 97013389 97013686 -65586244 - AluSc SINE Alu -4 305 1 2424 83 0 0 chrX 97015043 97015343 -65584587 + AluY SINE Alu 1 300 -11 4697 43 48 0 chrX 97015506 97016091 -65583839 - L1PA5 LINE L1 0 6154 5542 2458 90 7 0 chrX 97016340 97016650 -65583280 + AluSp SINE Alu 1 312 -1 287 256 13 0 chrX 97017103 97017181 -65582749 + MIR SINE MIR 172 250 -12 234 280 90 30 chrX 97017843 97017943 -65581987 + L2 LINE L2 3186 3291 -22 420 20 0 0 chrX 97019685 97019734 -65580196 + (CA)n Simple_repeat Simple_repeat 2 50 0 233 336 136 43 chrX 97020651 97020886 -65579044 + L2 LINE L2 2966 3222 -50 602 192 152 0 chrX 97023540 97023691 -65576239 - MIR SINE MIR -10 252 79 557 289 90 32 chrX 97023854 97024507 -65575423 + L1ME4a LINE L1 4357 5047 -1099 1284 253 150 33 chrX 97024781 97025261 -65574669 - L1MC4a LINE L1 -696 5648 5541 2151 125 0 3 chrX 97025261 97025565 -65574365 + AluSx SINE Alu 1 303 -9 1284 253 150 33 chrX 97025565 97025638 -65574292 - L1MC4a LINE L1 -803 5541 5478 749 272 102 26 chrX 97025668 97025998 -65573932 + L1ME4a LINE L1 5512 5876 -245 2240 108 3 0 chrX 97025998 97026295 -65573635 + AluSx SINE Alu 1 298 -14 749 272 102 26 chrX 97026295 97026346 -65573584 + L1ME4a LINE L1 5876 5922 -199 480 249 57 23 chrX 97028411 97028588 -65571342 - L1ME4a LINE L1 -4 6117 5935 189 171 0 0 chrX 97028603 97028638 -65571292 + (CA)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chrX 97028648 97028683 -65571247 + AT_rich Low_complexity Low_complexity 1 35 0 1010 257 102 29 chrX 97028735 97029147 -65570783 - L1ME4a LINE L1 -223 5898 5457 342 200 158 36 chrX 97029308 97029473 -65570457 - L1ME4a LINE L1 -758 5410 5266 445 219 73 41 chrX 97029595 97029718 -65570212 + L2 LINE L2 3187 3313 0 2242 127 25 3 chrX 97029735 97030090 -65569840 + L1MA9 LINE L1 5949 6311 -1 517 346 60 16 chrX 97030098 97030468 -65569462 - L1ME4a LINE L1 -883 5263 4878 216 268 79 16 chrX 97030493 97030620 -65569310 + L2 LINE L2 3179 3313 0 182 289 0 0 chrX 97032016 97032061 -65567869 - MIR3 SINE MIR -22 186 142 201 178 22 22 chrX 97033817 97033862 -65566068 + CT-rich Low_complexity Low_complexity 2 46 0 456 67 0 0 chrX 97033862 97033922 -65566008 + (CA)n Simple_repeat Simple_repeat 1 60 0 2253 109 0 3 chrX 97034269 97034572 -65565358 + AluSx SINE Alu 1 302 -10 2842 10 0 0 chrX 97035269 97035572 -65564358 - AluYa5 SINE Alu -8 303 1 288 77 0 0 chrX 97038378 97038417 -65561513 + (CA)n Simple_repeat Simple_repeat 1 39 0 287 325 42 33 chrX 97038997 97039117 -65560813 + L2 LINE L2 3142 3262 -10 202 404 83 0 chrX 97039350 97039506 -65560424 + L2 LINE L2 3104 3272 0 325 244 199 0 chrX 97039754 97039910 -65560020 + L2 LINE L2 3127 3313 0 264 272 104 33 chrX 97041338 97041491 -65558439 + MIR SINE MIR 55 216 -46 2271 98 10 0 chrX 97041756 97042052 -65557878 + AluSp SINE Alu 1 299 -14 796 127 7 70 chrX 97042139 97042281 -65557649 - FLAM_C SINE Alu 0 133 1 182 133 0 67 chrX 97045908 97045953 -65553977 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 206 277 0 15 chrX 97046306 97046371 -65553559 + CT-rich Low_complexity Low_complexity 2 65 0 252 86 0 0 chrX 97046499 97046534 -65553396 + (TC)n Simple_repeat Simple_repeat 2 36 0 25 31 0 0 chrX 97049115 97049147 -65550783 + GC_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chrX 97049176 97049215 -65550715 + GC_rich Low_complexity Low_complexity 1 39 0 279 0 0 0 chrX 97050095 97050126 -65549804 + (CCG)n Simple_repeat Simple_repeat 3 33 0 32 26 0 0 chrX 97102522 97102561 -65497369 + AT_rich Low_complexity Low_complexity 1 39 0 2184 166 22 11 chrX 97104462 97104823 -65495107 + MLT1A1 LTR MaLR 1 365 0 549 325 177 23 chrX 97104832 97105266 -65494664 + L2 LINE L2 2197 2697 -617 654 291 42 29 chrX 97105312 97105495 -65494435 - MIR SINE MIR -17 245 57 2164 127 3 3 chrX 97105495 97105802 -65494128 + AluSx SINE Alu 1 307 -5 654 291 42 29 chrX 97105802 97105859 -65494071 - MIR SINE MIR -205 57 2 367 320 40 13 chrX 97105887 97106037 -65493893 + L2 LINE L2 3155 3308 -5 270 140 0 88 chrX 97108415 97108472 -65491458 - L2 LINE L2 0 3313 3262 265 238 0 16 chrX 97108963 97109026 -65490904 - MIR SINE MIR 0 262 201 711 269 53 14 chrX 97109263 97109471 -65490459 - MIR SINE MIR -31 231 16 253 267 86 52 chrX 97109536 97109652 -65490278 + MIR SINE MIR 72 191 -71 646 260 186 44 chrX 97109833 97110171 -65489759 + L2 LINE L2 2925 3310 -3 2537 181 85 6 chrX 97110175 97110707 -65489223 + MER50 LTR ERV1 1 574 -160 246 197 197 0 chrX 97111359 97111420 -65488510 + LTR16A LTR ERVL 337 409 -41 534 216 39 59 chrX 97111428 97111581 -65488349 - MIR SINE MIR -54 208 59 21 0 0 0 chrX 97112446 97112467 -65487463 + AT_rich Low_complexity Low_complexity 1 21 0 235 291 35 35 chrX 97112909 97112995 -65486935 + L2 LINE L2 3187 3272 0 2518 67 3 0 chrX 97113244 97113544 -65486386 - AluSg SINE Alu -9 301 1 2325 87 0 10 chrX 97113597 97113896 -65486034 - AluSx SINE Alu -16 296 1 256 242 16 0 chrX 97114608 97114670 -65485260 + (TA)n Simple_repeat Simple_repeat 2 64 0 * 473 230 149 40 chrX 97114636 97114915 -65485015 - L1MC4a LINE L1 -157 5964 5656 3238 166 51 33 chrX 97114932 97115565 -65484365 + L1MB7 LINE L1 5541 6184 0 2315 225 121 44 chrX 97115826 97116417 -65483513 - L1ME4a LINE L1 0 6121 5452 2442 80 0 13 chrX 97116417 97116730 -65483200 - AluSq SINE Alu -2 311 3 2315 225 121 44 chrX 97116730 97116934 -65482996 - L1ME4a LINE L1 -669 5452 5265 1341 229 68 37 chrX 97117730 97118084 -65481846 + MLT1A1 LTR MaLR 1 365 0 572 227 23 8 chrX 97118552 97118684 -65481246 - MIR SINE MIR -21 241 108 964 286 0 20 chrX 97118913 97119158 -65480772 + MIR SINE MIR 13 252 -10 255 296 91 11 chrX 97119704 97119792 -65480138 + MIR SINE MIR 68 162 -100 23 0 0 0 chrX 97119886 97119909 -65480021 + AT_rich Low_complexity Low_complexity 1 23 0 334 322 33 20 chrX 97120599 97120751 -65479179 + L1MC4a LINE L1 5574 5727 -2081 249 368 22 0 chrX 97120854 97120990 -65478940 + L1MC4a LINE L1 5792 5930 -1878 187 289 133 33 chrX 97121413 97121503 -65478427 - L2 LINE L2 0 3313 3215 422 321 7 0 chrX 97121598 97121735 -65478195 + MIR SINE MIR 115 252 -10 548 304 32 53 chrX 97121795 97122170 -65477760 + L1PA15 LINE L1 1 367 -7214 4774 218 18 17 chrX 97123283 97124935 -65474995 + L1PA15 LINE L1 2319 3991 -3593 8840 112 108 19 chrX 97124935 97126384 -65473546 + THE1C-int LTR MaLR 2 1579 -1 2022 150 18 71 chrX 97126384 97126778 -65473152 + THE1C LTR MaLR 3 375 0 1772 225 11 40 chrX 97126778 97127056 -65472874 + L1PA15 LINE L1 3987 4272 -3312 2183 138 0 0 chrX 97127056 97127353 -65472577 + AluSx SINE Alu 1 297 -15 963 135 0 0 chrX 97127353 97127509 -65472421 + (GGGA)n Simple_repeat Simple_repeat 2 157 0 1028 40 20 13 chrX 97127510 97127661 -65472269 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 1772 225 11 40 chrX 97127661 97127854 -65472076 + L1PA15 LINE L1 4270 4447 -3137 1041 92 0 0 chrX 97127873 97128014 -65471916 - L1PA13 LINE L1 -2 6161 6021 12591 172 4 29 chrX 97128017 97129962 -65469968 + L1PA15 LINE L1 4433 6424 -1179 2538 144 11 3 chrX 97129962 97130323 -65469607 - THE1B LTR MaLR 0 364 1 12591 172 4 29 chrX 97130323 97130870 -65469060 + L1PA15 LINE L1 6424 6983 -620 2324 138 30 16 chrX 97130870 97131240 -65468690 + THE1C LTR MaLR 1 375 0 12591 172 4 29 chrX 97131240 97131962 -65467968 + L1PA15 LINE L1 6983 7602 -1 1048 197 114 0 chrX 97132008 97132236 -65467694 - MIR SINE MIR -1 261 8 445 226 78 0 chrX 97132308 97132410 -65467520 - L2 LINE L2 -1 3312 3203 2404 76 0 7 chrX 97132419 97132723 -65467207 + AluSx SINE Alu 1 302 -10 801 237 172 0 chrX 97133546 97133761 -65466169 + MIR SINE MIR 4 255 -7 325 341 29 0 chrX 97133752 97133890 -65466040 + L2 LINE L2 2115 2256 -1058 * 433 224 35 17 chrX 97135257 97135373 -65464557 + L2 LINE L2 3194 3311 -2 2079 260 71 25 chrX 97135712 97136300 -65463630 + MLT2E LTR ERVL 11 625 -3 843 290 87 35 chrX 97136571 97137372 -65462558 - L1ME3 LINE L1 -95 6026 5192 228 169 0 51 chrX 97137606 97137665 -65462265 + T-rich Low_complexity Low_complexity 3 58 0 312 265 56 43 chrX 97137925 97138087 -65461843 - L1ME3 LINE L1 -1310 4836 4673 885 151 41 0 chrX 97138110 97138256 -65461674 - L1PA13 LINE L1 0 6163 6012 5408 226 143 18 chrX 97138256 97138410 -65461520 - L1PA13 LINE L1 -2704 4093 3960 2100 122 0 3 chrX 97138410 97138706 -65461224 - AluSx SINE Alu -17 295 1 5408 226 143 18 chrX 97138706 97140615 -65459315 - L1PA13 LINE L1 -2837 3960 1545 182 88 0 29 chrX 97140615 97140649 -65459281 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5408 226 143 18 chrX 97140649 97141061 -65458869 - L1PA13 LINE L1 -5252 1545 1186 295 156 0 0 chrX 97141069 97141114 -65458816 + MSTC LTR MaLR 384 428 0 1926 127 56 3 chrX 97141114 97141287 -65458643 - L1 LINE L1 -1699 4447 4285 225 0 0 0 chrX 97141287 97141312 -65458618 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1926 127 56 3 chrX 97141312 97141478 -65458452 - L1 LINE L1 -1861 4285 4090 6199 149 14 23 chrX 97141480 97142842 -65457088 + L1MA7 LINE L1 4776 6120 -171 2340 85 3 0 chrX 97142842 97143136 -65456794 + AluSp SINE Alu 1 295 -18 6199 149 14 23 chrX 97143136 97143307 -65456623 + L1MA7 LINE L1 6120 6291 0 1529 283 47 28 chrX 97143364 97143873 -65456057 + LTR33 LTR ERVL 3 521 0 362 319 136 25 chrX 97143934 97144213 -65455717 - LTR33 LTR ERVL -211 310 1 453 240 10 20 chrX 97144224 97144324 -65455606 + L2 LINE L2 3203 3301 -12 538 317 29 17 chrX 97144324 97144564 -65455366 + HAL1b LINE L1 446 688 -660 245 231 0 15 chrX 97144583 97144648 -65455282 + L1ME4a LINE L1 5636 5699 -422 351 243 135 9 chrX 97144648 97144759 -65455171 + MLT1J LTR MaLR 1 125 -386 277 163 0 0 chrX 97144936 97144979 -65454951 - L1PA13 LINE L1 -4912 1875 1833 * 4055 184 19 6 chrX 97144964 97145730 -65454200 + L1PA13 LINE L1 4113 4868 -1278 1458 30 0 0 chrX 97145730 97145896 -65454034 + L1PA4 LINE L1 5990 6155 0 * 6522 86 35 10 chrX 97145888 97147164 -65452766 + L1PA13 LINE L1 4869 6163 0 4055 184 19 6 chrX 97145896 97147207 -65452723 + L1PA13 LINE L1 4868 4925 -1221 262 162 40 54 chrX 97147235 97147309 -65452621 + MLT1J1 LTR MaLR 353 425 -21 598 246 92 49 chrX 97147320 97147669 -65452261 + L1ME4a LINE L1 5752 6115 -6 2507 51 0 0 chrX 97147671 97147964 -65451966 + AluY SINE Alu 1 293 -18 724 284 117 12 chrX 97152269 97152526 -65447404 + L2 LINE L2 1875 2158 -1156 868 204 33 6 chrX 97152537 97152718 -65447212 + MIR SINE MIR 6 191 -71 2378 70 0 3 chrX 97152724 97153023 -65446907 + AluY SINE Alu 3 300 -11 1163 132 0 0 chrX 97153023 97153182 -65446748 + AluSg/x SINE Alu 134 292 -20 180 0 0 0 chrX 97153190 97153210 -65446720 + (TA)n Simple_repeat Simple_repeat 2 21 0 221 167 36 12 chrX 97153244 97153328 -65446602 + (TA)n Simple_repeat Simple_repeat 1 86 0 223 200 117 0 chrX 97153340 97153400 -65446530 + MIR SINE MIR 196 262 0 224 265 0 0 chrX 97153400 97153449 -65446481 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2304 297 61 24 chrX 97153449 97153569 -65446361 + L2 LINE L2 2152 2266 -1047 3018 209 9 34 chrX 97153569 97154137 -65445793 - MLT2B3 LTR ERVL 0 554 1 2304 297 61 24 chrX 97154137 97155137 -65444793 + L2 LINE L2 2266 3313 0 465 326 92 0 chrX 97155156 97155340 -65444590 - MIR SINE MIR -42 220 20 198 103 0 0 chrX 97155355 97155384 -65444546 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 316 371 30 8 chrX 97155385 97155517 -65444413 - L2 LINE L2 -16 3256 3122 1022 246 54 9 chrX 97155588 97155812 -65444118 + MIR SINE MIR 29 262 0 190 237 35 133 chrX 97155815 97155988 -65443942 - L2 LINE L2 -184 3088 2933 253 318 12 0 chrX 97157715 97157800 -65442130 - MIR SINE MIR -14 248 163 323 237 17 85 chrX 97158715 97158764 -65441166 - MIR3 SINE MIR -6 202 151 936 158 152 0 chrX 97158764 97158928 -65441002 - MER5A DNA MER1_type 0 189 1 323 237 17 85 chrX 97158928 97158996 -65440934 - MIR3 SINE MIR -57 151 93 311 270 79 8 chrX 97158989 97159108 -65440822 - MIR SINE MIR -103 105 21 * 565 273 154 50 chrX 97159127 97159347 -65440583 + MIR SINE MIR 19 261 -1 233 196 18 18 chrX 97159876 97159932 -65439998 - MIR SINE MIR -129 79 24 545 185 101 0 chrX 97160005 97160124 -65439806 - L1ME3A LINE L1 -9 6161 6031 225 196 0 0 chrX 97160954 97161010 -65438920 + CT-rich Low_complexity Low_complexity 1 56 0 671 312 131 32 chrX 97161047 97161390 -65438540 + L2 LINE L2 2937 3313 0 436 269 31 31 chrX 97161461 97161591 -65438339 + MIR SINE MIR 21 150 -112 226 163 23 0 chrX 97162089 97162132 -65437798 + CT-rich Low_complexity Low_complexity 3 46 0 1835 125 12 22 chrX 97162202 97162545 -65437385 - MER4A LTR ERV1 -6 658 261 620 82 31 21 chrX 97162545 97162642 -65437288 - MER4A LTR ERV1 -566 98 1 576 267 34 14 chrX 97162697 97162843 -65437087 - MIR3 SINE MIR -20 188 40 2308 51 3 17 chrX 97162858 97163174 -65436756 - AluY SINE Alu 0 334 23 1425 264 129 11 chrX 97163342 97163808 -65436122 - LTR33 LTR ERVL 0 521 1 435 248 7 80 chrX 97163819 97163966 -65435964 - MIR SINE MIR -65 143 32 195 198 70 116 chrX 97165534 97165620 -65434310 - L2 LINE L2 -1 3312 3231 239 310 0 28 chrX 97167862 97167933 -65431997 - L2 LINE L2 0 3313 3245 1483 146 0 0 chrX 97168867 97169113 -65430817 + L1 LINE L1 4078 4323 -1823 7670 132 17 19 chrX 97169880 97170503 -65429427 + L1MA5 LINE L1 3960 4583 -1717 1769 172 0 10 chrX 97170503 97170800 -65429130 + AluJb SINE Alu 12 305 -7 7670 132 17 19 chrX 97170800 97172527 -65427403 + L1MA5 LINE L1 4583 6300 0 223 314 196 20 chrX 97172537 97172639 -65427291 + MIR SINE MIR 24 143 -65 347 297 63 58 chrX 97172967 97173268 -65426662 - HAL1 LINE L1 -963 1544 1239 9208 25 1 0 chrX 97173268 97175151 -65424779 - L1PA3 LINE L1 0 6155 4291 347 297 63 58 chrX 97175151 97175276 -65424654 - HAL1 LINE L1 -1268 1239 1116 1698 169 3 50 chrX 97175334 97175636 -65424294 - AluJb SINE Alu -22 290 3 24 32 0 0 chrX 97175646 97175677 -65424253 + AT_rich Low_complexity Low_complexity 1 31 0 4289 251 45 37 chrX 97175684 97177064 -65422866 + L1MEc LINE L1 37 1405 -4991 2321 79 3 0 chrX 97177064 97177356 -65422574 + AluSp SINE Alu 1 293 -20 4289 251 45 37 chrX 97177356 97177478 -65422452 + L1MEc LINE L1 1405 1525 -4871 3597 51 0 9 chrX 97177478 97177874 -65422056 + MLT2A1 LTR ERVL 1 394 -50 330 26 0 0 chrX 97177874 97177913 -65422017 + (CA)n Simple_repeat Simple_repeat 2 40 0 3597 51 0 9 chrX 97177913 97177964 -65421966 + MLT2A1 LTR ERVL 394 444 0 4289 251 45 37 chrX 97177964 97178124 -65421806 + L1MEc LINE L1 1525 1713 -4683 * 5443 164 22 24 chrX 97178123 97179032 -65420898 + L1MC3 LINE L1 6705 7614 -171 2507 52 0 10 chrX 97179032 97179341 -65420589 + AluY SINE Alu 1 306 -5 5443 164 22 24 chrX 97179341 97179370 -65420560 + L1MC3 LINE L1 7614 7642 -143 2657 97 106 7 chrX 97179370 97179793 -65420137 - MER4C LTR ERV1 0 465 1 5443 164 22 24 chrX 97179793 97179858 -65420072 + L1MC3 LINE L1 7642 7707 -78 387 0 0 0 chrX 97179876 97179919 -65420011 + (TG)n Simple_repeat Simple_repeat 2 44 0 2531 46 0 7 chrX 97179928 97180230 -65419700 - AluY SINE Alu -11 300 1 723 270 73 0 chrX 97180876 97181080 -65418850 - MIR SINE MIR -24 238 20 2286 95 0 3 chrX 97181194 97181488 -65418442 + AluSc SINE Alu 3 295 -14 770 282 123 53 chrX 97181767 97182403 -65417527 + L1MC4a LINE L1 5346 6028 -93 200 182 0 0 chrX 97182488 97182521 -65417409 + GA-rich Low_complexity Low_complexity 1 33 0 222 118 0 0 chrX 97182855 97182889 -65417041 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 499 226 203 0 chrX 97183936 97184069 -65415861 + MER5A DNA MER1_type 12 171 -18 209 276 103 52 chrX 97184222 97184338 -65415592 - L2 LINE L2 -10 3303 3182 28 79 0 0 chrX 97185136 97185199 -65414731 + AT_rich Low_complexity Low_complexity 1 63 0 186 337 61 37 chrX 97185227 97185473 -65414457 + L2 LINE L2 1746 1997 -1317 321 256 51 0 chrX 97185496 97185613 -65414317 - L1MC4 LINE L1 -2 8040 7918 210 204 0 41 chrX 97185616 97185665 -65414265 + CT-rich Low_complexity Low_complexity 2 48 0 422 221 241 11 chrX 97185949 97186211 -65413719 - L1ME4a LINE L1 -9 6112 5791 550 293 93 43 chrX 97186233 97186748 -65413182 + L1ME4a LINE L1 5297 5837 -284 2482 60 0 3 chrX 97186777 97187077 -65412853 + AluY SINE Alu 11 309 -2 4055 175 70 17 chrX 97187265 97188611 -65411319 - L1MB8 LINE L1 -2 6176 4761 495 296 37 19 chrX 97188678 97188894 -65411036 - L1ME4a LINE L1 -318 5803 5584 221 196 0 22 chrX 97188898 97188944 -65410986 + GA-rich Low_complexity Low_complexity 4 48 0 228 323 11 22 chrX 97188996 97189087 -65410843 + MIR SINE MIR 59 147 -64 22 0 0 0 chrX 97189272 97189294 -65410636 + AT_rich Low_complexity Low_complexity 1 22 0 764 202 144 0 chrX 97189943 97190116 -65409814 + LTR40a LTR ERVL 3 200 -319 * 2206 220 16 5 chrX 97190098 97190530 -65409400 + LTR53 LTR ERVL 83 519 0 1392 203 77 31 chrX 97190539 97190864 -65409066 + LTR40b LTR ERVL 123 462 0 228 67 0 0 chrX 97191105 97191135 -65408795 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 265 246 18 0 chrX 97192072 97192129 -65407801 - MER113 DNA MER1_type? 0 521 464 25 51 0 0 chrX 97192269 97192308 -65407622 + AT_rich Low_complexity Low_complexity 1 39 0 2425 67 3 3 chrX 97192664 97192961 -65406969 - AluSp SINE Alu -16 297 1 206 245 20 0 chrX 97193107 97193156 -65406774 + (TG)n Simple_repeat Simple_repeat 1 50 0 1170 167 4 52 chrX 97193258 97193491 -65406439 + L1MB3 LINE L1 5661 5882 -301 962 168 47 0 chrX 97193494 97193684 -65406246 + L1MB3 LINE L1 5975 6173 -10 203 176 39 0 chrX 97193698 97193749 -65406181 + GA-rich Low_complexity Low_complexity 3 55 0 400 307 168 24 chrX 97193751 97194174 -65405756 + HAL1 LINE L1 228 711 -1796 1167 285 145 24 chrX 97194306 97195394 -65404536 - L1MC4a LINE L1 -743 5403 4787 2381 81 0 0 chrX 97195394 97195691 -65404239 - AluSp SINE Alu -16 297 1 1167 285 145 24 chrX 97195691 97196270 -65403660 - L1MC4a LINE L1 -1359 4787 4280 325 250 52 17 chrX 97196347 97196463 -65403467 + HAL1 LINE L1 947 1066 -1441 241 322 45 25 chrX 97196595 97196754 -65403176 + MIR SINE MIR 40 201 -43 4048 171 38 13 chrX 97197003 97197474 -65402456 - L1MA9 LINE L1 -38 6274 5773 5394 118 10 9 chrX 97197474 97198888 -65401042 - L1PA16 LINE L1 0 6166 4718 4048 171 38 13 chrX 97198888 97199212 -65400718 - L1MA9 LINE L1 -539 5773 5459 2312 141 77 83 chrX 97199209 97199936 -65399994 + L1MA9 LINE L1 4757 5455 -743 * 1960 183 55 24 chrX 97199957 97200372 -65399558 + MSTA LTR MaLR 1 428 0 708 323 36 12 chrX 97200609 97200857 -65399073 - MIR SINE MIR -1 261 8 594 240 82 6 chrX 97201176 97201347 -65398583 - MER46C DNA MER2_type -153 185 2 23 33 0 0 chrX 97201356 97201386 -65398544 + AT_rich Low_complexity Low_complexity 1 30 0 10686 186 61 81 chrX 97201387 97202141 -65397789 - L1MB1 LINE L1 -4 5988 5220 3002 145 19 21 chrX 97202141 97202713 -65397217 - L1MA4 LINE L1 -9 6291 5721 10686 186 61 81 chrX 97202713 97203541 -65396389 - L1MB1 LINE L1 -772 5220 4377 2712 82 27 0 chrX 97203541 97203917 -65396013 - L1PA11 LINE L1 -2 6172 5787 10686 186 61 81 chrX 97203917 97205392 -65394538 - L1MB1 LINE L1 -1615 4377 2874 839 167 0 22 chrX 97205392 97205530 -65394400 + FRAM SINE Alu 18 152 -24 10686 186 61 81 chrX 97205530 97206329 -65393601 - L1MB1 LINE L1 -3118 2874 2061 5778 53 4 0 chrX 97206329 97207045 -65392885 + L1PA6 LINE L1 5435 6153 -1 10686 186 61 81 chrX 97207045 97207439 -65392491 - L1MB1 LINE L1 -3931 2061 1661 294 50 0 0 chrX 97207439 97207479 -65392451 + (CA)n Simple_repeat Simple_repeat 2 41 0 10686 186 61 81 chrX 97207479 97209513 -65390417 - L1MB1 LINE L1 -4331 1661 188 4696 61 20 0 chrX 97209513 97210120 -65389810 - L1PA6 LINE L1 -11 6143 5525 10686 186 61 81 chrX 97210120 97210304 -65389626 - L1MB1 LINE L1 -5804 188 2 5963 56 0 4 chrX 97210368 97211117 -65388813 - L1PA7 LINE L1 -14 6140 5395 1043 187 30 10 chrX 97211165 97211363 -65388567 + MSTB LTR MaLR 225 426 0 732 238 0 0 chrX 97211363 97211531 -65388399 + L1MC1 LINE L1 4518 4685 -1461 2211 111 18 9 chrX 97211531 97211864 -65388066 - L1PA13 LINE L1 -3 6160 5825 31 0 0 0 chrX 97211864 97211895 -65388035 + AT_rich Low_complexity Low_complexity 1 31 0 7071 55 30 0 chrX 97211895 97212855 -65387075 - L1PA8 LINE L1 -7 6165 5200 3628 146 16 3 chrX 97212855 97213875 -65386055 - L1PA13 LINE L1 -324 5837 4810 2535 207 29 4 chrX 97213875 97213990 -65385940 + L1PA13 LINE L1 4679 4790 -1383 2340 71 10 19 chrX 97213990 97214299 -65385631 + AluSg SINE Alu 1 306 -4 2535 207 29 4 chrX 97214299 97214922 -65385008 + L1MC1 LINE L1 4790 5430 -743 21051 163 19 18 chrX 97214923 97215969 -65383961 + L1MA2 LINE L1 27 1071 -6494 2446 84 0 3 chrX 97215976 97216286 -65383644 + AluY SINE Alu 1 309 -2 21051 163 19 18 chrX 97216011 97217186 -65382744 + L1MA2 LINE L1 1071 2244 -5321 2395 103 3 0 chrX 97217186 97217498 -65382432 - AluSp SINE Alu 0 313 1 21051 163 19 18 chrX 97217498 97220619 -65379311 + L1MA2 LINE L1 2244 5363 -2202 2299 96 3 37 chrX 97220619 97220943 -65378987 + AluSp SINE Alu 1 313 0 21051 163 19 18 chrX 97220943 97221219 -65378711 + L1MA2 LINE L1 5363 5637 -1928 2161 121 7 0 chrX 97221219 97221509 -65378421 + AluSc SINE Alu 1 292 -17 21051 163 19 18 chrX 97221509 97222599 -65377331 + L1MA2 LINE L1 5637 6470 -1095 42986 37 25 2 chrX 97222626 97227816 -65372114 + L1P LINE L1 1 5311 -835 6516 67 16 35 chrX 97227860 97229053 -65370877 + SVA Other Other 433 1398 0 8002 12 0 0 chrX 97229053 97229905 -65370025 + L1PA2 LINE L1 5304 6155 0 7447 113 10 1 chrX 97229907 97231158 -65368772 + L1MA2 LINE L1 6461 7722 -1 5619 158 3 13 chrX 97231199 97232111 -65367819 + L1MC1 LINE L1 5428 6330 -3 777 223 69 9 chrX 97232113 97232346 -65367584 + HAL1 LINE L1 1140 1386 -1121 694 296 5 11 chrX 97233977 97234163 -65365767 + MIR3 SINE MIR 14 198 -10 2171 152 58 9 chrX 97234472 97234820 -65365110 - MLT1A1 LTR MaLR 0 365 1 480 267 20 20 chrX 97235135 97235285 -65364645 - MER5A DNA MER1_type -3 186 37 2368 107 0 0 chrX 97235645 97235954 -65363976 - AluSx SINE Alu -3 309 1 683 306 80 30 chrX 97235986 97236349 -65363581 + L2 LINE L2 1979 2359 -955 343 249 12 17 chrX 97236400 97236573 -65363357 + GA-rich Low_complexity Low_complexity 4 175 0 4034 166 95 41 chrX 97236605 97237766 -65362164 + L1MB7 LINE L1 4151 5248 -936 483 18 0 0 chrX 97237766 97237822 -65362108 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 4034 166 95 41 chrX 97237822 97237859 -65362071 + L1MB7 LINE L1 5248 5282 -902 2095 115 0 17 chrX 97237859 97238154 -65361776 + AluSx SINE Alu 1 290 -22 4034 166 95 41 chrX 97238154 97238694 -65361236 + L1MB7 LINE L1 5282 5997 -187 302 169 0 0 chrX 97238697 97238756 -65361174 + L1MB7 LINE L1 6110 6168 -16 2022 128 0 26 chrX 97238783 97239087 -65360843 + AluSx SINE Alu 1 296 -16 304 294 21 88 chrX 97239148 97239342 -65360588 + L1ME4a LINE L1 5427 5607 -2201 1831 188 38 28 chrX 97239375 97239801 -65360129 + MLT1C LTR MaLR 10 439 -28 628 269 42 62 chrX 97239831 97240091 -65359839 + L1ME4a LINE L1 5635 5889 -232 565 115 0 0 chrX 97240112 97240190 -65359740 - MLT1A1 LTR MaLR 0 365 288 1804 296 70 60 chrX 97240812 97242021 -65357909 - HERVI LTR ERV1 -138 6511 5290 385 269 0 28 chrX 97242424 97242532 -65357398 - HERVI LTR ERV1 -3768 3128 3024 439 283 0 0 chrX 97242754 97242867 -65357063 - HERVI LTR ERV1 -2029 5756 5644 192 259 111 37 chrX 97242872 97242953 -65356977 - MIR SINE MIR -160 102 16 2410 89 0 13 chrX 97243016 97243329 -65356601 + AluY SINE Alu 1 309 -2 2267 322 34 31 chrX 97243384 97244745 -65355185 - HERVI LTR ERV1 -2320 5465 4101 2541 323 39 32 chrX 97244809 97244957 -65354973 - HERVI LTR ERV1 -3673 4112 3967 2132 73 0 0 chrX 97244957 97245216 -65354714 - L1PA7 LINE L1 -2 6152 5894 2541 323 39 32 chrX 97245216 97246718 -65353212 - HERVI LTR ERV1 -3818 3967 2450 933 305 59 62 chrX 97246720 97247496 -65352434 - HERVI LTR ERV1 -4687 2083 1187 2031 145 0 23 chrX 97247496 97247806 -65352124 + AluSx SINE Alu 1 303 -9 933 305 59 62 chrX 97247806 97247842 -65352088 - HERVI LTR ERV1 -5583 1187 1152 207 100 0 0 chrX 97247926 97247956 -65351974 + (T)n Simple_repeat Simple_repeat 1 30 0 1507 71 0 0 chrX 97248126 97248310 -65351620 - AluY SINE Alu -20 291 108 577 320 13 9 chrX 97248343 97248568 -65351362 - HERVI LTR ERV1 -6782 1003 778 438 256 64 13 chrX 97248806 97248962 -65350968 - HERVI LTR ERV1 -6279 370 207 1405 167 58 51 chrX 97249601 97249894 -65350036 - MLT1A1 LTR MaLR -70 295 1 22 0 0 0 chrX 97249905 97249927 -65350003 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chrX 97249946 97249970 -65349960 + (CA)n Simple_repeat Simple_repeat 2 25 0 457 270 48 137 chrX 97250152 97250467 -65349463 + L2 LINE L2 2872 3158 -114 227 311 76 38 chrX 97250757 97250889 -65349041 + L2 LINE L2 2869 3005 -267 1427 237 81 17 chrX 97251088 97251498 -65348432 + HAL1b LINE L1 440 875 -473 931 203 17 68 chrX 97251507 97251743 -65348187 - MIR SINE MIR -24 238 15 589 245 80 5 chrX 97251745 97251933 -65347997 + HAL1b LINE L1 884 1085 -263 1532 199 7 4 chrX 97252074 97252408 -65347522 - AluJo SINE Alu 0 336 2 403 200 63 21 chrX 97252412 97252507 -65347423 - MIR SINE MIR -49 213 115 246 213 46 28 chrX 97252507 97252615 -65347315 + HAL1b LINE L1 1238 1347 -1 1587 300 66 12 chrX 97252655 97253261 -65346669 + L2 LINE L2 2120 2758 -556 565 233 29 0 chrX 97253292 97253395 -65346535 + FLAM_A SINE Alu 13 118 -24 749 235 126 91 chrX 97253433 97253927 -65346003 + MLT1J LTR MaLR 1 511 0 995 301 18 86 chrX 97253938 97254427 -65345503 + L2 LINE L2 2816 3271 -1 367 356 26 21 chrX 97254712 97254903 -65345027 - L2 LINE L2 -215 3057 2866 764 363 99 14 chrX 97255217 97255784 -65344146 - L2 LINE L2 -475 2839 2225 186 261 145 0 chrX 97255895 97255964 -65343966 - L2 LINE L2 -798 2516 2438 560 315 80 52 chrX 97256006 97256042 -65343888 - L2 LINE L2 -866 2448 2414 2434 169 18 5 chrX 97256042 97256427 -65343503 + MLT1B LTR MaLR 1 390 0 560 315 80 52 chrX 97256427 97256752 -65343178 - L2 LINE L2 -900 2414 2077 327 276 0 11 chrX 97256881 97256968 -65342962 + L2 LINE L2 3227 3312 -1 21 0 0 0 chrX 97258473 97258494 -65341436 + AT_rich Low_complexity Low_complexity 1 21 0 312 83 0 0 chrX 97260642 97260690 -65339240 + (CA)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chrX 97261726 97261746 -65338184 + (A)n Simple_repeat Simple_repeat 1 20 0 338 253 0 33 chrX 97262161 97262252 -65337678 - MIR SINE MIR -135 127 40 388 77 0 0 chrX 97263194 97263246 -65336684 - MADE1 DNA Mariner 0 80 29 894 256 54 16 chrX 97266759 97267001 -65332929 - MIR SINE MIR -9 253 3 207 0 0 0 chrX 97267631 97267654 -65332276 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1003 65 24 0 chrX 97267654 97267778 -65332152 - AluY SINE Alu -184 127 1 226 70 0 47 chrX 97267813 97267856 -65332074 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 1899 128 44 0 chrX 97268405 97268524 -65331406 + AluSx SINE Alu 1 113 -199 216 0 0 0 chrX 97268524 97268548 -65331382 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1899 128 44 0 chrX 97268548 97268726 -65331204 + AluSx SINE Alu 113 311 -1 1397 139 32 0 chrX 97270719 97270970 -65328960 + L1MD3 LINE L1 7729 7987 -8 191 268 99 14 chrX 97271027 97271098 -65328832 - L2 LINE L2 0 3313 3237 2095 92 42 0 chrX 97272342 97272648 -65327282 + MER39B LTR ERV1 1 319 -334 26 0 0 0 chrX 97273865 97273891 -65326039 + AT_rich Low_complexity Low_complexity 1 26 0 2222 104 0 66 chrX 97273897 97274088 -65325842 - L1PB1 LINE L1 0 6151 5949 2327 55 0 45 chrX 97274088 97274398 -65325532 - AluY SINE Alu -15 296 1 2222 104 0 66 chrX 97274398 97274513 -65325417 - L1PB1 LINE L1 -202 5949 5874 2323 66 3 7 chrX 97274513 97274814 -65325116 + AluY SINE Alu 1 300 -11 2222 104 0 66 chrX 97274814 97274899 -65325031 - L1PB1 LINE L1 -277 5874 5785 665 233 0 6 chrX 97274920 97275100 -65324830 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 2670 84 0 0 chrX 97275101 97275481 -65324449 - L1PB1 LINE L1 -360 5791 5412 2212 87 43 10 chrX 97275923 97276223 -65323707 + AluSg SINE Alu 1 310 0 1287 129 5 14 chrX 97277094 97277304 -65322626 + MER2 DNA MER2_type 3 210 -135 209 216 0 20 chrX 97277561 97277612 -65322318 + GA-rich Low_complexity Low_complexity 1 50 0 247 235 15 15 chrX 97279696 97279764 -65320166 - MLT1J LTR MaLR -7 504 437 730 259 101 58 chrX 97279790 97280137 -65319793 - MLT1J LTR MaLR -149 362 1 431 284 15 56 chrX 97282468 97282665 -65317265 - MER5A DNA MER1_type 0 189 1 3526 105 13 11 chrX 97282702 97283177 -65316753 + MER41A LTR ERV1 1 479 -75 4223 78 4 0 chrX 97283177 97283728 -65316202 - MER41A LTR ERV1 -1 553 1 3526 105 13 11 chrX 97283728 97283805 -65316125 + MER41A LTR ERV1 479 554 0 800 183 120 42 chrX 97283998 97284239 -65315691 - MIR SINE MIR 0 262 3 3916 129 24 2 chrX 97284425 97285044 -65314886 + MER41B LTR ERV1 3 635 0 366 302 0 0 chrX 97285161 97285257 -65314673 + MER34 LTR ERV1 1 96 -446 1374 218 92 23 chrX 97285264 97285699 -65314231 + LTR48B LTR ERV1 151 615 -29 556 249 49 92 chrX 97286660 97287045 -65312885 + L1ME LINE L1 5435 5804 -317 1504 207 27 127 chrX 97287164 97287802 -65312128 + L1MB7 LINE L1 -246 327 -5953 1675 128 0 0 chrX 97287803 97288029 -65311901 + AluSg/x SINE Alu 71 296 -14 2509 253 64 44 chrX 97288037 97289052 -65310878 + L1MB7 LINE L1 1030 2197 -4366 2201 61 11 4 chrX 97289052 97289367 -65310563 - AluSx SINE Alu 0 317 1 2509 253 64 44 chrX 97289367 97289705 -65310225 + L1MB7 LINE L1 2197 2527 -4036 1188 119 0 0 chrX 97289687 97289880 -65310050 + L1 LINE L1 4630 4822 -1324 * 6379 84 5 27 chrX 97289880 97290744 -65309186 + L1PA11 LINE L1 4979 5818 -356 2173 110 0 0 chrX 97290744 97291082 -65308848 + AluSc SINE Alu 1 338 0 6379 84 5 27 chrX 97291082 97291431 -65308499 + L1PA11 LINE L1 5818 6173 -1 21 36 0 0 chrX 97291460 97291488 -65308442 + AT_rich Low_complexity Low_complexity 1 28 0 3664 232 28 21 chrX 97291609 97292449 -65307481 + L1MB7 LINE L1 3394 4247 -2135 2714 26 0 0 chrX 97292449 97292753 -65307177 + AluY SINE Alu 8 311 0 3664 232 28 21 chrX 97292753 97293077 -65306853 + L1MB7 LINE L1 4247 4567 -1815 3270 211 38 29 chrX 97293063 97294227 -65305703 + L1MB7 LINE L1 5178 6329 -91 * 1783 41 0 5 chrX 97294227 97294446 -65305484 + AluY SINE Alu 77 294 -17 3270 211 38 29 chrX 97294446 97294462 -65305468 + L1MB7 LINE L1 6329 6343 -77 2217 117 3 3 chrX 97294462 97294771 -65305159 + AluJb SINE Alu 1 309 -3 3270 211 38 29 chrX 97294771 97294811 -65305119 + L1MB7 LINE L1 6343 6405 -15 1046 214 15 10 chrX 97294839 97295045 -65304885 - MIR SINE MIR -41 221 15 5128 49 3 0 chrX 97296107 97296740 -65303190 - L1PA5 LINE L1 0 6154 5520 1984 84 53 11 chrX 97296821 97297088 -65302842 + AluSg SINE Alu 1 282 -28 276 100 0 0 chrX 97297088 97297128 -65302802 + (CA)n Simple_repeat Simple_repeat 1 40 0 1984 84 53 11 chrX 97297128 97297144 -65302786 + AluSg SINE Alu 282 296 -14 2237 88 3 3 chrX 97297196 97297490 -65302440 - AluSp SINE Alu -19 294 1 180 273 45 30 chrX 97298565 97298631 -65301299 - L2 LINE L2 0 3272 3206 2438 46 0 3 chrX 97299037 97299346 -65300584 - AluY SINE Alu 0 308 1 2258 114 0 0 chrX 97300177 97300475 -65299455 - AluSq SINE Alu -15 298 1 739 32 11 0 chrX 97301123 97301217 -65298713 - L1PA8 LINE L1 -6 6166 6072 455 217 153 19 chrX 97303613 97303770 -65296160 + MER3 DNA MER1_type 23 200 -9 1053 8 48 0 chrX 97304238 97304364 -65295566 - L1PA7 LINE L1 -2 6152 6021 2144 101 3 7 chrX 97304494 97304781 -65295149 + AluSx SINE Alu 9 294 -18 614 157 0 33 chrX 97305202 97305323 -65294607 + FRAM SINE Alu 60 176 0 2410 70 0 10 chrX 97305400 97305699 -65294231 + AluY SINE Alu 1 296 -15 2305 57 7 33 chrX 97306862 97307162 -65292768 - AluY SINE Alu -19 292 1 190 286 0 0 chrX 97310114 97310156 -65289774 + L2 LINE L2 3180 3221 -92 434 313 22 33 chrX 97311231 97311413 -65288517 - MIR SINE MIR 0 262 83 21 0 0 0 chrX 97312529 97312550 -65287380 + AT_rich Low_complexity Low_complexity 1 21 0 225 94 0 0 chrX 97312652 97312684 -65287246 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2464 58 0 0 chrX 97313126 97313420 -65286510 - AluY SINE Alu -17 294 1 254 318 80 82 chrX 97314016 97314441 -65285489 - L2 LINE L2 -31 3241 2818 305 80 0 20 chrX 97314564 97314614 -65285316 + (TC)n Simple_repeat Simple_repeat 2 50 0 318 107 0 0 chrX 97314614 97314670 -65285260 + (CA)n Simple_repeat Simple_repeat 1 56 0 282 347 126 0 chrX 97315019 97315114 -65284816 + L2 LINE L2 3150 3256 -16 596 216 67 15 chrX 97315145 97315279 -65284651 + L2 LINE L2 3169 3309 -4 286 238 200 0 chrX 97315296 97315376 -65284554 + L2 LINE L2 3175 3270 -2 2266 98 7 13 chrX 97315394 97315701 -65284229 - AluSg SINE Alu -5 305 1 191 267 0 0 chrX 97315718 97315763 -65284167 + L2 LINE L2 3256 3300 -13 205 204 41 0 chrX 97316810 97316859 -65283071 + GA-rich Low_complexity Low_complexity 4 54 0 210 304 0 25 chrX 97317355 97317434 -65282496 + CT-rich Low_complexity Low_complexity 4 80 0 697 243 6 34 chrX 97318034 97318211 -65281719 - MIR SINE MIR -84 178 7 218 188 0 21 chrX 97320367 97320415 -65279515 - L2 LINE L2 0 3313 3267 424 272 67 39 chrX 97321263 97321443 -65278487 + MIR SINE MIR 35 219 -43 180 323 0 16 chrX 97323339 97323401 -65276529 + MIR SINE MIR 32 92 -116 245 355 65 18 chrX 97323641 97323858 -65276072 - L2 LINE L2 -215 3057 2831 2084 132 0 26 chrX 97323862 97324172 -65275758 + AluSx SINE Alu 1 302 -10 290 307 18 26 chrX 97324234 97324348 -65275582 + L3 LINE CR1 1462 1574 -3 242 356 84 34 chrX 97324350 97324648 -65275282 - L2 LINE L2 -511 2803 2491 347 317 41 45 chrX 97324829 97325119 -65274811 - L2 LINE L2 -1158 2156 1868 223 328 144 20 chrX 97325519 97325714 -65274216 + L2 LINE L2 2249 2467 -847 344 258 184 12 chrX 97326933 97327096 -65272834 - MIR SINE MIR -49 213 23 219 276 0 0 chrX 97327505 97327563 -65272367 - MIR SINE MIR -21 241 184 445 255 13 33 chrX 97327579 97327732 -65272198 + L1MC4a LINE L1 5833 5982 -1826 567 252 112 47 chrX 97327933 97328147 -65271783 + MIR SINE MIR 21 248 -14 2302 98 10 0 chrX 97328219 97328524 -65271406 - AluSq SINE Alu -5 308 1 4226 133 26 1 chrX 97328549 97329233 -65270697 - L1MA4A LINE L1 0 6303 5603 417 42 56 14 chrX 97329234 97329305 -65270625 + CT-rich Low_complexity Low_complexity 1 74 0 2365 80 0 0 chrX 97329305 97329591 -65270339 - AluSq SINE Alu -27 286 1 1906 89 32 10 chrX 97329593 97329713 -65270217 - L1MA4A LINE L1 -699 5604 5488 2227 123 0 0 chrX 97329713 97330014 -65269916 - AluSx SINE Alu -11 301 1 1906 89 32 10 chrX 97330014 97330206 -65269724 - L1MA4A LINE L1 -815 5488 5292 595 67 0 0 chrX 97330215 97330290 -65269640 - Alu SINE Alu -234 76 2 5204 164 20 6 chrX 97330291 97331252 -65268678 - L1 LINE L1 -814 5332 4359 518 328 111 22 chrX 97331282 97331651 -65268279 - L3 LINE CR1 -1017 560 159 3513 220 66 54 chrX 97332526 97332911 -65267019 - L1ME1 LINE L1 -22 6144 5765 2295 86 0 46 chrX 97332911 97333235 -65266695 + AluSc SINE Alu 1 309 0 3513 220 66 54 chrX 97333235 97333853 -65266077 - L1ME1 LINE L1 -401 5765 5112 2319 76 10 0 chrX 97333853 97334142 -65265788 + AluY SINE Alu 1 292 -19 3513 220 66 54 chrX 97334142 97334508 -65265422 - L1ME1 LINE L1 -1054 5112 4752 506 265 113 0 chrX 97336430 97336581 -65263349 - MIR SINE MIR -58 204 37 1451 161 16 4 chrX 97336627 97336876 -65263054 - L1MC1 LINE L1 -5 6328 6077 1076 220 111 20 chrX 97338421 97338816 -65261114 - L1ME4a LINE L1 -4 6117 5687 1086 181 33 21 chrX 97340112 97340355 -65259575 - MIR SINE MIR -5 257 12 267 31 0 0 chrX 97340691 97340723 -65259207 + (A)n Simple_repeat Simple_repeat 1 32 0 278 228 51 13 chrX 97341901 97341980 -65257950 + MER5B DNA MER1_type 2 83 -95 2317 106 3 0 chrX 97342133 97342435 -65257495 - AluSq SINE Alu -10 303 1 2414 71 3 0 chrX 97343805 97344101 -65255829 - AluY SINE Alu -14 297 1 1145 176 17 17 chrX 97344771 97345004 -65254926 - MIR SINE MIR -28 234 2 273 323 10 0 chrX 97345854 97345953 -65253977 + CT-rich Low_complexity Low_complexity 5 104 0 272 259 198 0 chrX 97346190 97346306 -65253624 + MIR SINE MIR 117 255 -7 393 75 0 0 chrX 97348253 97348306 -65251624 + (CA)n Simple_repeat Simple_repeat 2 54 0 2371 81 0 13 chrX 97348840 97349148 -65250782 - AluSc SINE Alu -5 304 1 1413 279 81 8 chrX 97349248 97349848 -65250082 - L2 LINE L2 0 3313 2674 730 272 217 29 chrX 97349905 97350526 -65249404 - L2 LINE L2 -1149 2165 1428 275 100 0 0 chrX 97350589 97350629 -65249301 + L2 LINE L2 3267 3306 -7 229 218 179 39 chrX 97351875 97351953 -65247977 + L2 LINE L2 3157 3245 -27 420 274 89 0 chrX 97351970 97352118 -65247812 - MIR SINE MIR 0 262 97 259 292 108 77 chrX 97352147 97352602 -65247328 + L2 LINE L2 1542 2010 -1304 629 234 27 36 chrX 97354035 97354264 -65245666 + L1MC4a LINE L1 5693 5930 -248 1151 198 33 4 chrX 97354321 97354563 -65245367 - MIR SINE MIR -12 250 2 1809 156 7 23 chrX 97354790 97355091 -65244839 + AluSx SINE Alu 1 296 -16 440 306 14 20 chrX 97355175 97355322 -65244608 + L2 LINE L2 3122 3267 -5 1885 135 40 26 chrX 97355497 97355801 -65244129 - AluJb SINE Alu -4 308 1 194 61 0 30 chrX 97355991 97356024 -65243906 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 769 131 278 0 chrX 97356428 97356604 -65243326 - L1MA4 LINE L1 -4 6296 6072 565 256 94 90 chrX 97356668 97357050 -65242880 + L1MC4a LINE L1 5579 5965 -156 2392 100 0 0 chrX 97357050 97357360 -65242570 - AluSx SINE Alu -2 310 1 565 256 94 90 chrX 97357360 97357422 -65242508 + L1MC4a LINE L1 5965 6025 -96 231 291 101 0 chrX 97357801 97357880 -65242050 - MIR SINE MIR -174 88 2 186 43 0 0 chrX 97360784 97360807 -65239123 + (TTC)n Simple_repeat Simple_repeat 1 23 0 2491 86 0 0 chrX 97360924 97361228 -65238702 - AluSp SINE Alu -9 304 1 1835 165 0 13 chrX 97361454 97361757 -65238173 + AluJo SINE Alu 1 299 -13 2158 78 0 4 chrX 97361757 97362027 -65237903 + AluSq SINE Alu 39 307 -6 288 225 9 18 chrX 97362792 97362903 -65237027 + GA-rich Low_complexity Low_complexity 2 111 0 224 296 23 136 chrX 97363611 97363721 -65236209 + L2 LINE L2 2634 2755 -559 819 169 0 96 chrX 97363721 97363899 -65236031 - FAM SINE Alu -14 161 1 2510 55 0 3 chrX 97363908 97364201 -65235729 - AluY SINE Alu -19 292 1 224 296 23 136 chrX 97364201 97364344 -65235586 + L2 LINE L2 2763 2867 -447 354 263 44 36 chrX 97364664 97364801 -65235129 + L2 LINE L2 3172 3309 -4 2376 274 95 13 chrX 97365057 97365291 -65234639 + L2 LINE L2 2008 2221 -1092 2247 106 17 0 chrX 97365291 97365593 -65234337 - AluSx SINE Alu -5 307 1 2376 274 95 13 chrX 97365593 97366011 -65233919 + L2 LINE L2 2221 2603 -710 2789 172 40 16 chrX 97366011 97366568 -65233362 + L1MB5 LINE L1 5605 6174 0 2376 274 95 13 chrX 97366568 97367131 -65232799 + L2 LINE L2 2603 3312 -1 212 264 0 19 chrX 97367629 97367682 -65232248 + MIR3 SINE MIR 124 175 -33 247 326 21 0 chrX 97367944 97368039 -65231891 + L1ME4a LINE L1 5771 5867 -1941 2876 207 25 73 chrX 97368053 97368983 -65230947 - L1ME1 LINE L1 0 6166 5272 2223 217 46 96 chrX 97370274 97370461 -65229469 + HAL1b LINE L1 143 338 -1010 2432 72 0 3 chrX 97370461 97370766 -65229164 - AluY SINE Alu -7 304 1 2223 217 46 96 chrX 97370766 97371404 -65228526 + HAL1b LINE L1 338 927 -421 2379 115 0 0 chrX 97371447 97371760 -65228170 + AluSq SINE Alu 1 313 0 2724 140 36 40 chrX 97371783 97371845 -65228085 + L1MB8 LINE L1 5652 5713 -465 2380 84 0 22 chrX 97371845 97372156 -65227774 - AluSc SINE Alu -5 304 1 2724 140 36 40 chrX 97372156 97372622 -65227308 + L1MB8 LINE L1 5713 6178 0 985 233 109 0 chrX 97372641 97372954 -65226976 + HAL1b LINE L1 938 1284 -64 529 167 80 33 chrX 97373040 97373190 -65226740 + L1ME4a LINE L1 5962 6118 -3 477 285 66 20 chrX 97375043 97375194 -65224736 - L2 LINE L2 -8 3264 3107 29 37 0 19 chrX 97375402 97375433 -65224497 + AT_rich Low_complexity Low_complexity 1 32 -21 1568 179 0 43 chrX 97375433 97375735 -65224195 + AluJb SINE Alu 1 289 -23 29 37 0 19 chrX 97375735 97375757 -65224173 + AT_rich Low_complexity Low_complexity 32 53 0 518 272 133 25 chrX 97375903 97376274 -65223656 + L1MC4a LINE L1 5568 5991 -130 886 167 8 0 chrX 97376495 97376627 -65223303 - FLAM_A SINE Alu 0 133 1 376 381 32 26 chrX 97376802 97377114 -65222816 - L2 LINE L2 -774 2540 2227 231 326 11 33 chrX 97377417 97377509 -65222421 + L2 LINE L2 3184 3273 -40 841 238 70 5 chrX 97377569 97377783 -65222147 - MIR SINE MIR -14 248 21 221 328 179 31 chrX 97378183 97378768 -65221162 + L2 LINE L2 805 1476 -1838 1046 257 100 52 chrX 97378924 97379752 -65220178 + L1MEc LINE L1 2156 2983 -3232 2381 28 28 7 chrX 97380313 97380596 -65219334 + L1PA7 LINE L1 5866 6154 0 370 284 60 6 chrX 97380652 97380835 -65219095 + L1M4 LINE L1 2477 2669 -3477 336 158 70 0 chrX 97381035 97381092 -65218838 + MIR SINE MIR 37 97 -165 320 306 81 9 chrX 97381324 97381435 -65218495 + L2 LINE L2 3147 3265 -7 1023 215 27 69 chrX 97381552 97381574 -65218356 + MIR SINE MIR 14 35 -227 1960 122 6 32 chrX 97381574 97381885 -65218045 + AluSx SINE Alu 1 303 -9 1023 215 27 69 chrX 97381885 97382122 -65217808 + MIR SINE MIR 35 262 0 496 103 103 0 chrX 97382270 97382357 -65217573 - L1PB3 LINE L1 0 6154 6059 6236 228 68 39 chrX 97382904 97384704 -65215226 + L1ME1 LINE L1 68 1920 -4476 2039 185 147 42 chrX 97384696 97385524 -65214406 + L1ME1 LINE L1 4769 5738 -497 * 2196 112 3 3 chrX 97385525 97385828 -65214102 + AluSq SINE Alu 1 303 -10 1216 136 0 0 chrX 97385829 97385998 -65213932 + AluSg/x SINE Alu 134 302 -10 1988 191 36 54 chrX 97385999 97386465 -65213465 + L1ME1 LINE L1 5732 6189 -46 594 187 101 0 chrX 97386362 97386501 -65213429 + L1MA10 LINE L1 6244 6396 -7 * 2513 54 7 0 chrX 97386627 97386921 -65213009 - AluY SINE Alu -15 296 1 1078 209 205 32 chrX 97387066 97387383 -65212547 + Charlie7 DNA MER1_type 2095 2508 -104 2009 149 0 7 chrX 97387383 97387685 -65212245 - AluJb SINE Alu -12 300 1 1078 209 205 32 chrX 97387685 97387802 -65212128 + Charlie7 DNA MER1_type 2508 2604 -8 1699 144 69 28 chrX 97388010 97388120 -65211810 + AluJb SINE Alu 1 105 -207 195 69 0 0 chrX 97388120 97388149 -65211781 + (CA)n Simple_repeat Simple_repeat 2 30 0 1699 144 69 28 chrX 97388149 97388329 -65211601 + AluJb SINE Alu 105 303 -9 2370 83 3 3 chrX 97388529 97388830 -65211100 + AluSp SINE Alu 1 301 -12 231 36 0 0 chrX 97388892 97388920 -65211010 + (A)n Simple_repeat Simple_repeat 1 28 0 353 332 116 71 chrX 97389489 97389911 -65210019 - L2 LINE L2 -26 3246 2806 787 216 82 41 chrX 97390242 97390487 -65209443 + MIR SINE MIR 1 255 -7 2157 114 3 0 chrX 97391145 97391442 -65208488 - AluSg SINE Alu -12 298 1 1104 188 84 36 chrX 97391489 97391739 -65208191 - MIR SINE MIR 0 262 1 24 0 0 0 chrX 97393197 97393221 -65206709 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chrX 97393249 97393303 -65206627 + AT_rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chrX 97393430 97393466 -65206464 + AT_rich Low_complexity Low_complexity 1 36 0 650 198 32 0 chrX 97393750 97393876 -65206054 + L2 LINE L2 3182 3311 -2 913 289 181 58 chrX 97393908 97394140 -65205790 + L2 LINE L2 796 998 -2316 2266 110 13 0 chrX 97394140 97394448 -65205482 - AluSx SINE Alu 0 312 1 913 289 181 58 chrX 97394448 97395010 -65204920 + L2 LINE L2 998 1752 -1562 243 0 0 0 chrX 97395010 97395037 -65204893 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 913 289 181 58 chrX 97395037 97395290 -65204640 + L2 LINE L2 1752 1973 -1341 268 317 91 25 chrX 97395296 97395495 -65204435 + L1ME4a LINE L1 5614 5825 -1983 5103 67 77 1 chrX 97395496 97396200 -65203730 + SVA Other Other 58 814 -572 6490 65 5 58 chrX 97396226 97397235 -65202695 + SVA Other Other 430 1385 -1 228 248 124 35 chrX 97397290 97397435 -65202495 + L1ME4a LINE L1 5869 6026 -95 349 136 68 0 chrX 97398616 97398675 -65201255 - L1MA8 LINE L1 -12 6279 6217 1038 191 50 0 chrX 97399142 97399341 -65200589 - L1PB4 LINE L1 -2 6154 5946 752 280 113 23 chrX 97399586 97400004 -65199926 + L1ME LINE L1 5256 5707 -463 1602 268 22 30 chrX 97400009 97400509 -65199421 - L2 LINE L2 -719 2595 2100 2423 75 0 0 chrX 97401110 97401405 -65198525 + AluY SINE Alu 1 295 -16 413 329 150 7 chrX 97401603 97401877 -65198053 - L2 LINE L2 0 3313 3001 335 267 0 100 chrX 97402141 97402291 -65197639 - L2 LINE L2 -219 3053 2919 420 246 95 0 chrX 97402817 97402943 -65196987 + MIR SINE MIR 93 230 -32 558 229 143 61 chrX 97404963 97405194 -65194736 + L1ME LINE L1 5385 5634 -487 1315 292 122 24 chrX 97405198 97405935 -65193995 + L2 LINE L2 1612 2420 -894 5911 94 29 34 chrX 97405949 97406150 -65193780 + Tigger1 DNA MER2_type 1550 1751 -667 2506 61 0 0 chrX 97406150 97406444 -65193486 + AluY SINE Alu 1 294 -17 5911 94 29 34 chrX 97406444 97406606 -65193324 + Tigger1 DNA MER2_type 1751 1912 -506 2445 57 3 7 chrX 97406606 97406906 -65193024 + AluY SINE Alu 1 299 -12 5911 94 29 34 chrX 97406906 97407237 -65192693 + Tigger1 DNA MER2_type 1912 2241 -177 1714 141 13 27 chrX 97407237 97407536 -65192394 - AluJo SINE Alu -17 295 1 5911 94 29 34 chrX 97407536 97407713 -65192217 + Tigger1 DNA MER2_type 2241 2418 0 252 262 57 49 chrX 97407728 97407747 -65192183 + L1ME4a LINE L1 5988 6005 -116 2388 64 0 0 chrX 97407747 97408029 -65191901 + AluY SINE Alu 9 290 -21 273 75 0 0 chrX 97408029 97408069 -65191861 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 252 262 57 49 chrX 97408069 97408170 -65191760 + L1ME4a LINE L1 6004 6110 -11 22 0 0 0 chrX 97408204 97408226 -65191704 + AT_rich Low_complexity Low_complexity 1 22 0 719 55 143 0 chrX 97408367 97408486 -65191444 + L1PA8 LINE L1 6056 6187 0 395 322 58 0 chrX 97409546 97409717 -65190213 - L1ME3A LINE L1 -239 5931 5751 877 171 117 63 chrX 97409914 97410119 -65189811 - MER20 DNA MER1_type -3 216 1 186 313 30 30 chrX 97410122 97410189 -65189741 - L2 LINE L2 -16 3256 3190 496 314 38 90 chrX 97410266 97410639 -65189291 - L2 LINE L2 -101 3171 2833 2793 154 49 5 chrX 97410639 97411086 -65188844 - MLT1C LTR MaLR 0 467 1 496 314 38 90 chrX 97411086 97411183 -65188747 - L2 LINE L2 -439 2833 2733 3045 179 18 5 chrX 97411225 97411778 -65188152 - L1MB7 LINE L1 -358 5826 5267 255 335 59 25 chrX 97412136 97412339 -65187591 + L2 LINE L2 1912 2121 -1193 222 262 196 28 chrX 97412385 97412492 -65187438 - L2 LINE L2 -13 3300 3176 225 159 0 0 chrX 97412553 97412597 -65187333 + (CA)n Simple_repeat Simple_repeat 2 45 0 676 227 184 0 chrX 97412597 97412760 -65187170 - MIR SINE MIR -69 193 1 252 280 19 9 chrX 97412769 97412876 -65187054 + (TA)n Simple_repeat Simple_repeat 2 109 0 256 275 175 0 chrX 97414086 97414166 -65185764 - L2 LINE L2 -243 3070 2977 231 355 118 7 chrX 97414238 97414390 -65185540 - L2 LINE L2 -493 2821 2653 901 327 145 49 chrX 97414415 97415312 -65184618 + L2 LINE L2 2224 3222 -50 972 222 76 0 chrX 97415480 97415678 -65184252 + MER20 DNA MER1_type 7 219 0 534 194 0 0 chrX 97416047 97416150 -65183780 - MIR SINE MIR -61 201 99 2373 79 0 0 chrX 97416579 97416870 -65183060 - AluSg SINE Alu -19 291 1 390 207 156 22 chrX 97419083 97419218 -65180712 + L1ME4a LINE L1 5956 6108 -13 920 267 98 45 chrX 97419416 97419907 -65180023 - LTR33 LTR ERVL -2 519 3 2932 176 20 7 chrX 97419927 97420467 -65179463 - L1MA10 LINE L1 -7 6327 5781 5571 128 14 30 chrX 97420467 97421104 -65178826 + Tigger7 DNA MER2_type 2 623 -1864 2189 119 3 0 chrX 97421104 97421414 -65178516 + AluSx SINE Alu 1 311 -1 5571 128 14 30 chrX 97421414 97421628 -65178302 + Tigger7 DNA MER2_type 623 839 -1648 1771 89 16 8 chrX 97421627 97421885 -65178045 + Tigger7 DNA MER2_type 2227 2486 -1 * 3304 143 20 18 chrX 97421885 97422180 -65177750 - L1MA10 LINE L1 -528 5784 5491 2139 111 4 0 chrX 97422180 97422498 -65177432 - AluSx SINE Alu 0 320 2 3304 143 20 18 chrX 97422498 97423092 -65176838 - L1MA10 LINE L1 -821 5491 4895 362 353 57 60 chrX 97423437 97424001 -65175929 + HERVL LTR ERVL 784 1345 -4309 1615 53 0 0 chrX 97424523 97424713 -65175217 - L1PA6 LINE L1 -5 6149 5960 2437 226 44 9 chrX 97425625 97425775 -65174155 + L1MC4 LINE L1 6482 6625 -1417 2425 69 0 0 chrX 97425775 97426065 -65173865 + AluY SINE Alu 1 290 -21 198 0 0 0 chrX 97426065 97426087 -65173843 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 2437 226 44 9 chrX 97426087 97426133 -65173797 + L1MC4 LINE L1 6625 6668 -1374 279 0 0 0 chrX 97426133 97426164 -65173766 + (CA)n Simple_repeat Simple_repeat 2 32 0 2437 226 44 9 chrX 97426164 97426532 -65173398 + L1MC4 LINE L1 6668 7068 -974 1405 157 5 0 chrX 97426532 97426755 -65173175 - Tigger5 DNA MER2_type 0 2323 2100 1301 224 123 0 chrX 97426754 97427022 -65172908 - Tigger5 DNA MER2_type -2022 301 1 * 5305 145 6 5 chrX 97427023 97427828 -65172102 - ERVL-B3 LTR ERVL -323 5441 4636 411 166 0 4 chrX 97427828 97427907 -65172023 + L1PA16 LINE L1 5799 5875 -256 2217 151 11 0 chrX 97427910 97428261 -65171669 - ERVL-B3 LTR ERVL -1761 4003 3649 * 7299 128 14 3 chrX 97428257 97429298 -65170632 - ERVL-B3 LTR ERVL -3037 2727 1675 6821 169 19 41 chrX 97429298 97430043 -65169887 + L1PB1 LINE L1 3644 4404 -1747 306 0 0 0 chrX 97430043 97430077 -65169853 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6821 169 19 41 chrX 97430077 97430138 -65169792 + L1PB1 LINE L1 4404 4465 -1686 2541 84 0 0 chrX 97430138 97430449 -65169481 + AluY SINE Alu 1 311 0 6821 169 19 41 chrX 97430449 97430607 -65169323 + L1PB1 LINE L1 4465 4625 -1526 8126 28 0 0 chrX 97430607 97431880 -65168050 - L1PA4 LINE L1 -3 6152 4881 6821 169 19 41 chrX 97431880 97433294 -65166636 + L1PB1 LINE L1 4625 5965 -186 2101 123 0 0 chrX 97433294 97433605 -65166325 + AluSx SINE Alu 1 311 0 6821 169 19 41 chrX 97433605 97433783 -65166147 + L1PB1 LINE L1 5965 6145 -6 9082 186 42 17 chrX 97433804 97435461 -65164469 - ERVL-B3 LTR ERVL -4065 1699 2 3567 160 9 28 chrX 97435462 97435505 -65164425 - MLT2B3 LTR ERVL 0 554 512 413 65 0 16 chrX 97435505 97435567 -65164363 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 3567 160 9 28 chrX 97435567 97436087 -65163843 - MLT2B3 LTR ERVL -42 512 2 417 347 92 26 chrX 97436107 97436378 -65163552 - HERVL LTR ERVL -4008 1646 1358 26 0 0 0 chrX 97436392 97436418 -65163512 + AT_rich Low_complexity Low_complexity 1 26 0 1655 185 74 59 chrX 97436473 97436894 -65163036 - L1MC4 LINE L1 -142 7900 7474 1079 198 26 1 chrX 97436895 97437239 -65162691 + MLT2F LTR ERVL 1 398 -265 680 114 0 0 chrX 97437259 97437347 -65162583 + AluSg/x SINE Alu 213 300 -12 2502 53 0 16 chrX 97437363 97437666 -65162264 + AluY SINE Alu 1 298 -13 471 131 0 101 chrX 97437666 97437765 -65162165 - L1M1 LINE L1 -4437 3128 3040 * 12298 153 30 16 chrX 97437763 97439788 -65160142 - L1M1 LINE L1 -5501 2064 13 518 180 9 0 chrX 97439796 97439907 -65160023 - L1M4c LINE L1 -4172 2562 2451 3645 225 35 32 chrX 97440004 97441163 -65158767 - L1M4c LINE L1 -4516 2137 1150 260 271 43 93 chrX 97441451 97441591 -65158339 - L1M4c LINE L1 -5315 1338 1206 189 0 0 0 chrX 97441648 97441669 -65158261 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 10427 89 14 0 chrX 97441669 97443814 -65156116 - L1PA8 LINE L1 -18 6154 3985 10979 183 15 9 chrX 97443814 97446035 -65153895 - L1 LINE L1 -1827 4555 2320 5707 128 29 6 chrX 97446031 97446945 -65152985 - L1PA16 LINE L1 -2 6164 5230 * 354 254 23 23 chrX 97446918 97447091 -65152839 - L1 LINE L1 -4049 2333 2161 * 1203 158 0 0 chrX 97447093 97447257 -65152673 + FAM SINE Alu 1 164 -11 2547 98 2 117 chrX 97447281 97447742 -65152188 + L1PB2 LINE L1 5743 6150 -1 1083 176 0 0 chrX 97447768 97447938 -65151992 + AluJo SINE Alu 118 287 -25 31 0 0 0 chrX 97447938 97447969 -65151961 + AT_rich Low_complexity Low_complexity 1 31 0 4146 222 39 16 chrX 97447978 97449461 -65150469 - L1 LINE L1 -4216 2166 797 15069 200 9 28 chrX 97449462 97452632 -65147298 - L1P5 LINE L1 -510 6283 3253 2256 91 3 0 chrX 97452632 97452946 -65146984 - AluSp SINE Alu 0 315 1 15069 200 9 28 chrX 97452946 97453969 -65145961 - L1P5 LINE L1 -3540 3253 2212 2013 83 0 26 chrX 97453977 97454242 -65145688 - AluSq SINE Alu -52 261 4 5680 149 54 15 chrX 97454256 97455543 -65144387 - L1MC2 LINE L1 0 6344 5009 1298 235 27 24 chrX 97455545 97455839 -65144091 + MLT1A2 LTR MaLR 80 374 0 1165 171 9 31 chrX 97455839 97456061 -65143869 - L1MCb LINE L1 -4951 1094 878 693 139 0 9 chrX 97456071 97456186 -65143744 + L1MD3 LINE L1 6866 6979 -1016 397 200 52 61 chrX 97456221 97456336 -65143594 + MLT1F1 LTR MaLR 35 148 -419 2603 156 100 39 chrX 97456336 97456875 -65143055 + L1MC3 LINE L1 7214 7785 0 30 27 0 0 chrX 97456891 97456928 -65143002 + AT_rich Low_complexity Low_complexity 1 37 0 233 338 88 0 chrX 97456931 97457011 -65142919 + MIR SINE MIR 54 140 -122 247 240 0 0 chrX 97457029 97457079 -65142851 + L1M3d LINE L1 1 50 -5841 1301 142 129 50 chrX 97457089 97457406 -65142524 + MER4A LTR ERV1 1 342 -322 583 178 284 13 chrX 97457428 97457653 -65142277 + MER4C LTR ERV1 159 444 -21 649 184 122 79 chrX 97457672 97458163 -65141767 + MER4C-int LTR ERV1 1 640 -5958 645 69 0 0 chrX 97458163 97458250 -65141680 + (TG)n Simple_repeat Simple_repeat 2 88 0 649 184 122 79 chrX 97458250 97458285 -65141645 + MER4C-int LTR ERV1 640 672 -5926 347 313 40 67 chrX 97458299 97458523 -65141407 + MER4B-int LTR ERV1 359 576 -6182 270 182 0 0 chrX 97458647 97458691 -65141239 + MER4B-int LTR ERV1 751 794 -5804 960 92 7 20 chrX 97458971 97459123 -65140807 - LTR7 LTR ERV1 0 450 301 3669 110 14 11 chrX 97459142 97459696 -65140234 - HERVH LTR ERV1 -1 7712 7157 2317 159 19 5 chrX 97459689 97460110 -65139820 - HERVH LTR ERV1 -1697 6016 5590 * 10034 114 15 42 chrX 97460101 97461685 -65138245 - HERVH LTR ERV1 -2564 5149 3609 * 10240 134 5 28 chrX 97461678 97463339 -65136591 - HERVH LTR ERV1 -5290 2423 801 2136 179 42 26 chrX 97463405 97463857 -65136073 - HERVH LTR ERV1 -7254 459 1 2124 96 245 6 chrX 97463857 97464220 -65135710 - LTR7 LTR ERV1 0 450 1 295 222 0 0 chrX 97466443 97466506 -65133424 + MER4A-int LTR ERV1 3104 3166 -1788 548 315 61 59 chrX 97466810 97467856 -65132074 + MER4A-int LTR ERV1 3222 4930 -2826 2362 54 0 78 chrX 97467856 97468190 -65131740 + AluY SINE Alu 1 308 -3 548 315 61 59 chrX 97468190 97468273 -65131657 + MER4A-int LTR ERV1 4930 5011 -2745 2196 117 3 0 chrX 97468588 97468888 -65131042 + AluSq SINE Alu 1 301 -12 185 243 0 86 chrX 97469201 97469271 -65130659 + L2 LINE L2 2528 2591 -723 413 334 47 49 chrX 97469276 97469785 -65130145 + MER4A-int LTR ERV1 2390 2897 -1750 1599 327 33 19 chrX 97470095 97471113 -65128817 + MER4A-int LTR ERV1 5633 6665 -457 379 250 56 50 chrX 97470954 97471134 -65128796 + HERVL18 LTR ERVL 5621 5801 -246 * 228 241 0 0 chrX 97471472 97471530 -65128400 + T-rich Low_complexity Low_complexity 1 58 0 441 208 0 139 chrX 97471587 97471760 -65128170 + MER4A-int LTR ERV1 6450 6598 0 1058 164 126 54 chrX 97471763 97472080 -65127850 + MER4A LTR ERV1 3 342 -322 2417 60 0 0 chrX 97472114 97472441 -65127489 - AluSp SINE Alu 0 327 1 608 191 266 0 chrX 97473180 97473421 -65126509 + MER4C LTR ERV1 143 447 -18 235 301 68 38 chrX 97476990 97477123 -65122807 + L1M4 LINE L1 -170 4294967262 -6314 225 0 0 0 chrX 97477500 97477525 -65122405 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2472 187 26 108 chrX 97477615 97478575 -65121355 + L1M4 LINE L1 777 1776 -4537 9219 191 24 53 chrX 97478595 97480501 -65119429 - L1PB1 LINE L1 -8 6859 4899 1413 190 174 41 chrX 97480501 97480985 -65118945 - LTR10A LTR ERV1 -61 548 1 9219 191 24 53 chrX 97480985 97481912 -65118018 - L1PB1 LINE L1 -1968 4899 3947 2316 85 3 7 chrX 97481912 97482217 -65117713 - AluY SINE Alu -7 304 1 9219 191 24 53 chrX 97482217 97484648 -65115282 - L1PB1 LINE L1 -2920 3947 1094 2512 231 94 6 chrX 97484652 97485437 -65114493 - L1PB1 LINE L1 -5817 1046 193 403 185 0 0 chrX 97485454 97485535 -65114395 + L1MB3 LINE L1 1604 1684 -4700 * 5347 171 28 16 chrX 97485532 97487028 -65112902 + L1MB3 LINE L1 4345 5866 -553 2339 144 150 40 chrX 97487028 97487527 -65112403 - MLT2B3 LTR ERVL 0 554 1 5347 171 28 16 chrX 97487527 97488087 -65111843 + L1MB3 LINE L1 5866 6418 -1 193 119 119 0 chrX 97488104 97488146 -65111784 + MIR SINE MIR 161 207 -55 335 268 106 16 chrX 97489935 97490058 -65109872 + MIR SINE MIR 11 144 -118 2019 184 140 23 chrX 97490071 97490662 -65109268 + MLT1E2 LTR MaLR 27 626 0 192 200 0 0 chrX 97490668 97490703 -65109227 + MIR SINE MIR 228 262 0 259 263 144 25 chrX 97490879 97490997 -65108933 - MER20B DNA MER1_type -616 167 36 334 307 32 45 chrX 97491094 97491274 -65108656 - MER5A DNA MER1_type 0 189 1 2186 79 10 0 chrX 97491578 97491868 -65108062 - AluSp SINE Alu -20 293 1 22 0 0 0 chrX 97493540 97493562 -65106368 + AT_rich Low_complexity Low_complexity 1 22 0 244 137 39 0 chrX 97494074 97494125 -65105805 - L1MB8 LINE L1 -2 6176 6124 2254 107 3 0 chrX 97494167 97494466 -65105464 + AluSx SINE Alu 1 300 -12 28 48 0 0 chrX 97494928 97494970 -65104960 + AT_rich Low_complexity Low_complexity 1 42 0 424 53 0 0 chrX 97495163 97495220 -65104710 + Alu SINE Alu 248 304 -7 463 207 0 74 chrX 97496861 97496982 -65102948 - MIR SINE MIR -34 228 117 406 250 146 6 chrX 97497146 97497310 -65102620 + L1ME3 LINE L1 5681 5867 -295 234 219 23 132 chrX 97497683 97497902 -65102028 + L1MC/D LINE L1 5272 5466 -2342 1095 211 32 5 chrX 97497913 97498131 -65101799 - MER58A DNA MER1_type 0 224 1 333 229 49 83 chrX 97498148 97498292 -65101638 - MIR SINE MIR -120 142 4 32 0 0 0 chrX 97498547 97498579 -65101351 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chrX 97498647 97498667 -65101263 + (T)n Simple_repeat Simple_repeat 1 20 0 282 250 0 0 chrX 97500496 97500556 -65099374 + MER3 DNA MER1_type 31 90 -119 * 1196 157 0 5 chrX 97500519 97500723 -65099207 - MER3 DNA MER1_type -6 203 1 275 283 275 14 chrX 97501138 97501276 -65098654 - MIR SINE MIR -17 245 72 304 179 90 39 chrX 97501326 97501404 -65098526 - MIR SINE MIR -124 84 3 1948 158 0 10 chrX 97501563 97501854 -65098076 + AluJb SINE Alu 1 288 -24 240 200 0 0 chrX 97501854 97501904 -65098026 + (CATA)n Simple_repeat Simple_repeat 3 52 0 2327 102 0 0 chrX 97504290 97504595 -65095335 + AluSq SINE Alu 1 305 -8 966 279 45 0 chrX 97504605 97504849 -65095081 - MIR SINE MIR 0 262 8 366 299 34 26 chrX 97506152 97506269 -65093661 + MER5B DNA MER1_type 61 178 0 506 265 44 0 chrX 97506658 97506794 -65093136 - MIR3 SINE MIR -17 191 50 743 192 32 13 chrX 97507025 97507181 -65092749 - L2 LINE L2 0 3313 3155 40 21 0 0 chrX 97507390 97507437 -65092493 + AT_rich Low_complexity Low_complexity 1 47 0 905 198 17 6 chrX 97507475 97507647 -65092283 + FAM SINE Alu 1 174 -1 552 154 0 39 chrX 97507660 97507764 -65092166 + FLAM_A SINE Alu 21 120 -22 361 274 111 0 chrX 97508015 97508132 -65091798 + MER94 DNA DNA 1 130 -4 352 60 0 0 chrX 97508274 97508324 -65091606 + L1PB1 LINE L1 6101 6150 -1 26 30 0 0 chrX 97508557 97508590 -65091340 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chrX 97510395 97510420 -65089510 + AT_rich Low_complexity Low_complexity 1 25 0 1797 183 7 10 chrX 97511321 97511622 -65088308 + AluJb SINE Alu 1 300 -12 453 191 259 19 chrX 97512308 97512514 -65087416 - L1MD3 LINE L1 -11 7984 6115 1122 136 31 75 chrX 97512657 97512885 -65087045 + MER20 DNA MER1_type 2 219 0 36 70 0 0 chrX 97515815 97515886 -65084044 + AT_rich Low_complexity Low_complexity 1 71 0 1061 175 20 87 chrX 97516672 97516777 -65083153 + MIR SINE MIR 6 117 -145 2332 110 3 0 chrX 97516777 97517087 -65082843 - AluSx SINE Alu 0 312 2 1061 175 20 87 chrX 97517087 97517233 -65082697 + MIR SINE MIR 117 240 -22 3329 168 31 31 chrX 97517410 97517967 -65081963 - L1MB7 LINE L1 -19 6165 5609 2251 94 0 50 chrX 97517967 97518149 -65081781 - AluSg SINE Alu -8 302 141 2288 68 14 10 chrX 97518149 97518441 -65081489 - AluY SINE Alu -18 293 1 2251 94 0 50 chrX 97518441 97518515 -65081415 - AluSg SINE Alu -169 141 1 466 115 0 0 chrX 97518515 97518576 -65081354 - AluS SINE Alu -257 61 1 3329 168 31 31 chrX 97518576 97518726 -65081204 - L1MB7 LINE L1 -574 5610 5458 246 62 0 0 chrX 97518977 97519009 -65080921 + (TC)n Simple_repeat Simple_repeat 1 32 0 495 214 49 116 chrX 97519051 97519262 -65080668 - MIR SINE MIR -1 261 70 2194 114 3 3 chrX 97519262 97519561 -65080369 + AluSx SINE Alu 1 299 -13 495 214 49 116 chrX 97519561 97519616 -65080314 - MIR SINE MIR -192 70 13 2260 106 0 3 chrX 97519838 97520141 -65079789 + AluSq SINE Alu 1 302 -11 2293 96 0 7 chrX 97520647 97520948 -65078982 - AluSq SINE Alu -14 299 1 2319 106 6 3 chrX 97521150 97521462 -65078468 + AluSp SINE Alu 1 313 0 1275 226 33 42 chrX 97522771 97523107 -65076823 - MER102b DNA MER1_type -8 333 1 1975 130 20 0 chrX 97523194 97523487 -65076443 - AluSx SINE Alu -11 301 3 22 70 0 0 chrX 97523951 97523994 -65075936 + AT_rich Low_complexity Low_complexity 1 43 0 1783 138 31 17 chrX 97523994 97524285 -65075645 + AluSx SINE Alu 1 295 -17 2070 105 22 0 chrX 97524542 97524847 -65075083 + AluSx SINE Alu 1 311 0 473 280 64 84 chrX 97525154 97525497 -65074433 + L1ME LINE L1 5357 5692 -429 1477 202 50 7 chrX 97525579 97526055 -65073875 - AluSx SINE Alu 0 312 2 939 141 0 0 chrX 97526056 97526191 -65073739 - AluSq/x SINE Alu -177 135 1 2252 102 7 0 chrX 97526216 97526510 -65073420 + AluSx SINE Alu 1 296 -16 356 208 52 10 chrX 97526560 97526656 -65073274 + L1ME4a LINE L1 6011 6110 -11 292 363 0 0 chrX 97528005 97528151 -65071779 + (CCA)n Simple_repeat Simple_repeat 3 148 0 1942 152 0 0 chrX 97528935 97529224 -65070706 - AluJo SINE Alu -19 293 5 11953 162 4 34 chrX 97529237 97532227 -65067703 - L1PA15 LINE L1 -3 6162 3230 1534 274 108 13 chrX 97532420 97533040 -65066890 - L1MC4a LINE L1 -1876 5932 5254 1789 134 88 0 chrX 97533111 97533394 -65066536 - AluJb SINE Alu -4 308 1 479 285 81 37 chrX 97534031 97534277 -65065653 + MIR SINE MIR 6 262 0 294 148 0 0 chrX 97534430 97534484 -65065446 + (TAA)n Simple_repeat Simple_repeat 1 54 0 284 153 17 51 chrX 97535381 97535440 -65064490 + L2 LINE L2 3250 3306 -7 2033 137 0 0 chrX 97536352 97536645 -65063285 - AluJb SINE Alu -19 293 1 1020 199 14 63 chrX 97538044 97538265 -65061665 + MER63A DNA MER1_type 1 210 0 2201 121 0 3 chrX 97538294 97538599 -65061331 + AluSx SINE Alu 1 304 -8 256 279 0 0 chrX 97538688 97538756 -65061174 + L1ME1 LINE L1 6080 6147 -19 327 65 0 0 chrX 97538831 97538877 -65061053 + (TG)n Simple_repeat Simple_repeat 2 47 0 356 106 136 0 chrX 97538937 97539003 -65060927 + MADE1 DNA Mariner 6 80 0 1111 141 6 0 chrX 97539081 97539251 -65060679 + L1PB4 LINE L1 5958 6128 -28 754 148 22 37 chrX 97539253 97539379 -65060551 + FLAM_C SINE Alu 3 129 -183 2283 41 44 0 chrX 97539379 97539674 -65060256 - AluY SINE Alu 0 308 2 227 196 0 0 chrX 97539799 97539845 -65060085 + L1ME LINE L1 5760 5805 -316 1059 170 0 6 chrX 97539935 97540279 -65059651 + AluJb SINE Alu 132 474 0 21 36 0 0 chrX 97540311 97540339 -65059591 + AT_rich Low_complexity Low_complexity 1 28 0 12606 24 1 0 chrX 97541166 97542610 -65057320 - L1P LINE L1 -1143 5003 3559 806 206 26 26 chrX 97542787 97542976 -65056954 + MER53 DNA DNA 1 189 0 1578 156 58 52 chrX 97543374 97543702 -65056228 + MER58B DNA MER1_type 4 333 -8 713 307 66 17 chrX 97544218 97544459 -65055471 + MIR SINE MIR 5 257 -5 27 49 0 0 chrX 97544831 97544872 -65055058 + AT_rich Low_complexity Low_complexity 1 41 0 288 319 52 44 chrX 97545112 97545247 -65054683 - MIR3 SINE MIR -53 155 20 321 251 166 86 chrX 97545642 97545751 -65054179 + MIR3 SINE MIR 30 158 -50 1500 191 25 9 chrX 97545751 97546070 -65053860 + MER33 DNA MER1_type 1 324 0 321 251 166 86 chrX 97546070 97546123 -65053807 + MIR3 SINE MIR 158 205 -3 199 217 96 52 chrX 97547113 97547228 -65052702 + L3 LINE CR1 765 884 -693 901 275 133 58 chrX 97547584 97548553 -65051377 - L1MB8 LINE L1 -231 5947 4857 2055 150 0 0 chrX 97548553 97548860 -65051070 - AluSx SINE Alu -5 307 1 901 275 133 58 chrX 97548860 97549073 -65050857 - L1MB8 LINE L1 -1321 4857 4661 2520 59 0 3 chrX 97549192 97549499 -65050431 - AluY SINE Alu -5 306 1 951 270 61 15 chrX 97549499 97549726 -65050204 - L1MB8 LINE L1 -1715 4431 4175 2260 82 36 7 chrX 97549726 97550029 -65049901 - AluSq SINE Alu -1 312 1 951 270 61 15 chrX 97550029 97550208 -65049722 - L1MB8 LINE L1 -1971 4175 4006 273 143 16 32 chrX 97550239 97550302 -65049628 - MER69 DNA AcHobo -91 2435 2374 270 196 93 41 chrX 97550360 97550457 -65049473 - MER69 DNA AcHobo -134 2392 2291 * 1700 216 18 6 chrX 97550454 97550788 -65049142 - MER69 DNA AcHobo -785 441 104 755 315 120 25 chrX 97550794 97551027 -65048903 + L3 LINE CR1 1091 1300 -277 2031 144 0 13 chrX 97551027 97551339 -65048591 + AluSx SINE Alu 1 308 -4 755 315 120 25 chrX 97551339 97551546 -65048384 + L3 LINE CR1 1300 1573 -4 7200 44 0 1 chrX 97551867 97552688 -65047242 + L1PA8 LINE L1 5345 6164 -8 225 94 0 0 chrX 97553359 97553391 -65046539 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2239 53 42 7 chrX 97553394 97553678 -65046252 - AluY SINE Alu -17 294 1 295 276 46 0 chrX 97553877 97553964 -65045966 + MIR SINE MIR 48 138 -124 272 266 31 0 chrX 97554058 97554122 -65045808 + MIR SINE MIR 2 67 -195 404 247 0 0 chrX 97554136 97554229 -65045701 + MIR SINE MIR 169 261 -1 213 261 0 58 chrX 97554648 97554717 -65045213 + MIR SINE MIR 156 220 -42 189 210 97 65 chrX 97554834 97554896 -65045034 + L2 LINE L2 2991 3054 -218 2131 154 126 32 chrX 97555109 97555571 -65044359 + MLT1D LTR MaLR 1 505 0 2272 104 0 16 chrX 97555646 97555963 -65043967 + AluSx SINE Alu 1 312 0 231 88 0 0 chrX 97556345 97556379 -65043551 + (A)n Simple_repeat Simple_repeat 1 34 0 206 219 246 79 chrX 97557030 97557144 -65042786 + MER5A DNA MER1_type 50 182 -7 2341 107 0 3 chrX 97557708 97558018 -65041912 + AluSg SINE Alu 1 309 -1 2079 131 0 22 chrX 97558026 97558339 -65041591 + AluSx SINE Alu 1 306 -6 722 237 65 49 chrX 97558787 97559032 -65040898 - L2 LINE L2 0 3313 3065 320 359 6 0 chrX 97560179 97560346 -65039584 + (CCA)n Simple_repeat Simple_repeat 1 168 0 546 303 80 5 chrX 97561029 97561217 -65038713 - L2 LINE L2 -229 3084 2883 2491 131 20 95 chrX 97561218 97561312 -65038618 + MLT1C LTR MaLR 2 102 -365 2259 119 0 3 chrX 97561312 97561623 -65038307 + AluSx SINE Alu 1 310 -2 2491 131 20 95 chrX 97561623 97561734 -65038196 + MLT1C LTR MaLR 102 220 -247 201 94 0 0 chrX 97561734 97561766 -65038164 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 674 244 0 0 chrX 97561768 97561891 -65038039 - FLAM_A SINE Alu -10 123 1 2491 131 20 95 chrX 97561891 97562080 -65037850 + MLT1C LTR MaLR 221 357 -110 1913 146 0 0 chrX 97562080 97562355 -65037575 + AluJb SINE Alu 4 278 -34 2491 131 20 95 chrX 97562355 97562459 -65037471 + MLT1C LTR MaLR 357 467 0 221 302 70 0 chrX 97562460 97562546 -65037384 - L2 LINE L2 -427 2887 2796 673 63 0 0 chrX 97562759 97562838 -65037092 - MADE1 DNA Mariner -1 79 1 334 134 60 15 chrX 97562985 97563052 -65036878 - MLT1F LTR MaLR -4 538 469 959 227 31 10 chrX 97563295 97563602 -65036328 + Charlie4a DNA MER1_type 1 334 -174 1957 165 33 3 chrX 97563602 97563965 -65035965 + L1MA8 LINE L1 4548 4921 -1225 857 128 7 54 chrX 97563965 97564159 -65035771 + FLAM_C SINE Alu 1 187 0 5384 142 19 38 chrX 97564166 97564567 -65035363 + L1MA8 LINE L1 4906 5313 -978 1900 90 0 0 chrX 97564567 97564819 -65035111 + L1MA2 LINE L1 6048 6303 -1 5384 142 19 38 chrX 97564819 97565732 -65034198 + L1MA8 LINE L1 5313 6196 -95 3543 177 12 14 chrX 97565702 97566342 -65033588 + L1PB4 LINE L1 5529 6036 -120 * 2272 92 0 0 chrX 97566342 97566626 -65033304 + AluSg SINE Alu 1 284 -26 3543 177 12 14 chrX 97566626 97566745 -65033185 + L1PB4 LINE L1 6036 6154 -2 229 205 64 13 chrX 97566767 97566845 -65033085 + Charlie4a DNA MER1_type 312 393 -115 810 172 27 152 chrX 97566851 97567107 -65032823 - AluJo SINE Alu -68 244 21 533 189 90 8 chrX 97567109 97567231 -65032699 + Charlie4a DNA MER1_type 377 508 0 205 210 32 0 chrX 97567461 97567523 -65032407 + L2 LINE L2 2520 2583 -731 769 190 29 11 chrX 97567577 97567751 -65032179 - MER104 DNA Tc2 -3 177 1 741 249 171 29 chrX 97568481 97569021 -65030909 + L1MC4a LINE L1 5505 5743 -499 904 178 18 24 chrX 97569022 97569191 -65030739 + AluJb SINE Alu 121 288 -24 22 0 0 0 chrX 97569198 97569220 -65030710 + AT_rich Low_complexity Low_complexity 1 22 0 1378 246 67 96 chrX 97569244 97569658 -65030272 + L1MC4a LINE L1 6195 6620 -1188 1842 146 4 4 chrX 97569658 97569926 -65030004 + AluSq SINE Alu 1 268 -45 1378 246 67 96 chrX 97569926 97569949 -65029981 + L1MC4a LINE L1 6620 6642 -1166 423 0 0 0 chrX 97569949 97569996 -65029934 + (TG)n Simple_repeat Simple_repeat 2 48 0 1378 246 67 96 chrX 97569996 97570305 -65029625 + L1MC4a LINE L1 6642 6920 -888 2494 261 65 69 chrX 97570363 97571572 -65028358 + L1M4 LINE L1 7 1193 -5349 1908 163 0 0 chrX 97571588 97571888 -65028042 + AluSx SINE Alu 1 300 -12 2136 203 45 10 chrX 97571899 97572416 -65027514 + L1M4 LINE L1 4668 5202 -1442 340 132 0 0 chrX 97572416 97572475 -65027455 + Alu SINE Alu 1 44 -257 1607 141 8 4 chrX 97572475 97572716 -65027214 - AluJb SINE Alu -70 242 1 816 153 0 29 chrX 97572875 97573012 -65026918 + FLAM_C SINE Alu 1 133 0 212 248 141 50 chrX 97573088 97573144 -65026786 + MER5A DNA MER1_type 58 108 -81 2584 50 0 3 chrX 97573144 97573445 -65026485 - AluY SINE Alu -11 300 1 212 248 141 50 chrX 97573445 97573509 -65026421 + MER5A DNA MER1_type 108 189 0 231 204 0 0 chrX 97573509 97573553 -65026377 + (TATG)n Simple_repeat Simple_repeat 2 45 0 2823 205 74 16 chrX 97573587 97574073 -65025857 + L1M4c LINE L1 2713 3245 -3399 2199 122 3 0 chrX 97574073 97574368 -65025562 + AluSq SINE Alu 1 296 -17 2823 205 74 16 chrX 97574368 97574691 -65025239 + L1M4c LINE L1 3245 3548 -3096 * 2958 203 30 80 chrX 97574687 97575113 -65024817 + L1M4c LINE L1 4067 4432 -2212 2339 72 3 0 chrX 97575113 97575404 -65024526 - AluY SINE Alu -19 292 1 2958 203 30 80 chrX 97575404 97575819 -65024111 + L1M4c LINE L1 4432 4866 -1778 1740 126 38 0 chrX 97575827 97576090 -65023840 - L1MC/D LINE L1 -690 5643 5371 * 3298 216 30 0 chrX 97576083 97576638 -65023292 + L1M4c LINE L1 4880 5466 -1178 233 29 29 0 chrX 97576638 97576672 -65023258 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3298 216 30 0 chrX 97576672 97576874 -65023056 + L1M4c LINE L1 5466 5660 -984 664 304 96 0 chrX 97577443 97577673 -65022257 + MIR SINE MIR 3 254 -8 853 163 24 81 chrX 97578009 97578255 -65021675 - LTR37B LTR ERV1 0 468 237 2417 130 6 3 chrX 97578436 97578782 -65021148 - L1MC1 LINE L1 0 6333 5987 2095 181 79 44 chrX 97578981 97579462 -65020468 - MLT1D LTR MaLR 0 505 8 655 289 85 68 chrX 97579520 97579552 -65020378 - L1MC1 LINE L1 -1911 5897 5867 1864 165 0 13 chrX 97579552 97579855 -65020075 - AluJo SINE Alu -13 299 1 655 289 85 68 chrX 97579855 97580248 -65019682 - L1MC1 LINE L1 -1941 5867 5470 288 0 0 0 chrX 97580462 97580494 -65019436 + (TG)n Simple_repeat Simple_repeat 2 33 0 2035 97 25 4 chrX 97580494 97580772 -65019158 - AluSx SINE Alu -28 284 1 993 215 49 41 chrX 97581797 97581977 -65017953 + MIR SINE MIR 15 199 -63 2428 93 3 0 chrX 97581977 97582288 -65017642 + AluSx SINE Alu 1 312 0 993 215 49 41 chrX 97582288 97582353 -65017577 + MIR SINE MIR 199 262 0 2412 90 3 0 chrX 97582659 97582958 -65016972 + AluSp SINE Alu 1 300 -13 2371 96 0 0 chrX 97585271 97585573 -65014357 + AluSx SINE Alu 1 302 -10 399 41 0 0 chrX 97585725 97585774 -65014156 + (CA)n Simple_repeat Simple_repeat 2 50 0 225 0 0 0 chrX 97587444 97587469 -65012461 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 5230 147 57 2 chrX 97587602 97588033 -65011897 + L1MA9 LINE L1 5333 5739 -573 369 75 0 0 chrX 97588033 97588086 -65011844 + (TG)n Simple_repeat Simple_repeat 1 53 0 5230 147 57 2 chrX 97588086 97588433 -65011497 + L1MA9 LINE L1 5739 6169 -143 300 53 0 0 chrX 97588433 97588471 -65011459 + (CA)n Simple_repeat Simple_repeat 1 38 0 5230 147 57 2 chrX 97588471 97588584 -65011346 + L1MA9 LINE L1 6169 6274 -38 306 278 83 35 chrX 97588602 97588746 -65011184 + L1ME4a LINE L1 5968 6118 -3 566 183 35 26 chrX 97589038 97589153 -65010777 + L2 LINE L2 3197 3312 -1 2185 126 0 0 chrX 97589192 97589493 -65010437 + AluSx SINE Alu 1 301 -11 1201 127 12 0 chrX 97589493 97589666 -65010264 + AluSg/x SINE Alu 132 306 -4 1225 96 0 6 chrX 97589697 97589854 -65010076 + AluSx SINE Alu 8 163 -149 249 211 0 0 chrX 97589858 97589915 -65010015 + GA-rich Low_complexity Low_complexity 1 57 0 1078 48 30 12 chrX 97589915 97590081 -65009849 + (GAAA)n Simple_repeat Simple_repeat 4 172 0 194 170 57 57 chrX 97590091 97590144 -65009786 + MIR SINE MIR 79 131 -131 832 218 89 15 chrX 97590909 97591111 -65008819 + MIR SINE MIR 25 241 -21 246 209 11 22 chrX 97591121 97591212 -65008718 + CT-rich Low_complexity Low_complexity 1 90 0 285 266 24 53 chrX 97591374 97591543 -65008387 + L1ME4a LINE L1 4456 4619 -1527 683 273 121 43 chrX 97591846 97592335 -65007595 + L1ME4a LINE L1 5222 5742 -379 22 70 0 0 chrX 97592613 97592656 -65007274 + AT_rich Low_complexity Low_complexity 1 43 0 395 230 84 45 chrX 97592750 97592928 -65007002 + L1ME4a LINE L1 5936 6120 -1 1991 115 0 47 chrX 97593112 97593283 -65006647 - AluSx SINE Alu 0 302 150 1847 120 79 0 chrX 97593283 97593549 -65006381 - AluSx SINE Alu -21 291 5 1991 115 0 47 chrX 97593549 97593693 -65006237 - AluSx SINE Alu -152 150 1 2638 58 0 0 chrX 97594180 97594488 -65005442 - AluY SINE Alu -3 308 1 228 272 224 20 chrX 97594536 97594683 -65005247 - MER5B DNA MER1_type 0 178 2 1064 174 79 0 chrX 97594894 97595084 -65004846 + MER3 DNA MER1_type 1 205 -4 1625 177 13 43 chrX 97595511 97595816 -65004114 - AluJo SINE Alu -16 296 1 2431 80 0 46 chrX 97596180 97596507 -65003423 - AluSx SINE Alu 0 312 1 213 289 0 0 chrX 97597052 97597104 -65002826 + L2 LINE L2 3261 3312 -1 675 311 19 19 chrX 97598169 97598426 -65001504 + Charlie8 DNA MER1_type 19 275 -2142 462 182 0 0 chrX 97598487 97598564 -65001366 + Charlie8 DNA MER1_type 2341 2417 0 322 273 0 133 chrX 97598564 97598729 -65001201 - MIR3 SINE MIR -48 160 18 288 164 104 15 chrX 97598777 97598844 -65001086 - L1MA9 LINE L1 0 6312 6240 1376 133 137 52 chrX 97599448 97599539 -65000391 + AluJo SINE Alu 1 83 -229 2196 83 31 7 chrX 97599539 97599827 -65000103 - AluSx SINE Alu -17 295 1 1376 133 137 52 chrX 97599827 97600006 -64999924 + AluJo SINE Alu 83 294 -18 2167 107 0 0 chrX 97602362 97602689 -64997241 + AluSx SINE Alu 1 327 0 2316 111 0 6 chrX 97603205 97603520 -64996410 + AluSq SINE Alu 1 313 0 2096 133 6 16 chrX 97605238 97605553 -64994377 + AluJb SINE Alu 1 312 0 2116 133 7 3 chrX 97605554 97605856 -64994074 + AluSx SINE Alu 1 303 -9 1986 167 56 10 chrX 97606217 97606607 -64993323 - L1MB7 LINE L1 0 6184 5777 2203 143 108 17 chrX 97606607 97607013 -64992917 - MLT2C2 LTR ERVL -21 443 1 1120 148 224 41 chrX 97607013 97607303 -64992627 - L1MB7 LINE L1 -442 5742 5400 300 119 0 0 chrX 97607308 97607367 -64992563 + (GA)n Simple_repeat Simple_repeat 1 59 0 246 283 225 32 chrX 97607552 97607739 -64992191 + LTR67 LTR ERVL 2 224 -333 1307 283 49 27 chrX 97607755 97608201 -64991729 + LTR16B LTR ERVL 8 463 -1 632 214 23 8 chrX 97608383 97608514 -64991416 + LTR67 LTR ERVL 415 547 -10 300 104 18 18 chrX 97608573 97608614 -64991316 - THE1C LTR MaLR 0 428 388 2324 112 0 0 chrX 97608614 97608926 -64991004 + AluSx SINE Alu 1 312 0 300 104 18 18 chrX 97608926 97608943 -64990987 - THE1C LTR MaLR -39 389 297 180 125 0 0 chrX 97608944 97608976 -64990954 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 1598 132 109 22 chrX 97608984 97609295 -64990635 - THE1C LTR MaLR -37 338 1 2271 104 3 0 chrX 97609349 97609646 -64990284 - AluSx SINE Alu -14 298 1 2387 88 0 0 chrX 97610702 97610999 -64988931 + AluSx SINE Alu 1 297 -15 243 211 39 0 chrX 97611049 97611101 -64988829 + MIR3 SINE MIR 147 200 -8 702 241 111 65 chrX 97611188 97611603 -64988327 + L1MC4a LINE L1 5640 6073 -1735 832 272 39 4 chrX 97612476 97612708 -64987222 - MIR SINE MIR -2 260 21 190 256 0 0 chrX 97612836 97612875 -64987055 + L2 LINE L2 2607 2645 -669 547 254 15 15 chrX 97612984 97613118 -64986812 - MER5A DNA MER1_type -1 188 55 912 109 79 94 chrX 97613540 97613620 -64986310 - MER3 DNA MER1_type -4 205 125 2287 108 0 7 chrX 97613620 97613916 -64986014 + AluSx SINE Alu 1 294 -18 912 109 79 94 chrX 97613916 97614037 -64985893 - MER3 DNA MER1_type -84 125 7 2019 60 0 0 chrX 97614268 97614503 -64985427 - AluSx SINE Alu -77 235 1 427 260 59 33 chrX 97614515 97614636 -64985294 - MIR SINE MIR -62 146 35 193 256 0 0 chrX 97615418 97615461 -64984469 + MIR SINE MIR 37 79 -129 240 35 0 0 chrX 97615464 97615493 -64984437 + (TG)n Simple_repeat Simple_repeat 2 30 0 2414 64 0 0 chrX 97615748 97616059 -64983871 - AluSq SINE Alu 0 311 1 1761 263 18 20 chrX 97616091 97616590 -64983340 - L1ME3A LINE L1 -319 5851 5354 2359 95 0 0 chrX 97616713 97617018 -64982912 - AluSq SINE Alu -8 305 1 1800 175 13 10 chrX 97617424 97617603 -64982327 - AluJb SINE Alu -3 309 127 387 0 0 0 chrX 97617603 97617646 -64982284 + (CA)n Simple_repeat Simple_repeat 2 44 0 1800 175 13 10 chrX 97617646 97617774 -64982156 - AluJb SINE Alu -185 127 1 497 268 232 0 chrX 97617775 97617917 -64982013 - MER5A DNA MER1_type -3 186 12 487 326 8 8 chrX 97617920 97618052 -64981878 + MIR SINE MIR 18 149 -113 1068 68 0 0 chrX 97618055 97618187 -64981743 + AluSc SINE Alu 174 305 -4 296 238 40 87 chrX 97618187 97618259 -64981671 + MIR SINE MIR 143 208 -54 2301 83 7 3 chrX 97618259 97618559 -64981371 + AluSx SINE Alu 1 301 -11 296 238 40 87 chrX 97618559 97618612 -64981318 + MIR SINE MIR 208 262 0 1546 242 92 30 chrX 97618794 97619285 -64980645 - LTR33 LTR ERVL 0 521 1 249 355 7 43 chrX 97619523 97619661 -64980269 + L2 LINE L2 2918 3050 -222 368 290 25 6 chrX 97620046 97620208 -64979722 + L1M4 LINE L1 2854 3018 -3128 1928 143 3 13 chrX 97620260 97620561 -64979369 - AluJb SINE Alu -14 298 1 3148 223 86 107 chrX 97620690 97621710 -64978220 + L1MDa LINE L1 45 1020 -5520 2248 99 3 22 chrX 97621710 97622023 -64977907 - AluSx SINE Alu -5 307 1 3148 223 86 107 chrX 97622023 97622589 -64977341 + L1MDa LINE L1 1020 1597 -4943 442 221 8 0 chrX 97622592 97622719 -64977211 + L1MDa LINE L1 2290 2417 -4123 * 4792 186 106 91 chrX 97622697 97623306 -64976624 + L1MDa LINE L1 2830 3428 -3112 2294 102 0 3 chrX 97623306 97623610 -64976320 + AluSq SINE Alu 1 303 -10 1020 152 6 6 chrX 97623611 97623776 -64976154 + L1PA16 LINE L1 5992 6156 -10 4792 186 106 91 chrX 97623776 97624435 -64975495 + L1MDa LINE L1 3428 4137 -2403 192 40 0 0 chrX 97624435 97624460 -64975470 + (TAA)n Simple_repeat Simple_repeat 2 26 0 4792 186 106 91 chrX 97624460 97624980 -64974950 + L1MDa LINE L1 4137 4648 -1892 1300 185 122 0 chrX 97624999 97625286 -64974644 + L1MD2 LINE L1 5811 6132 -227 4317 172 35 38 chrX 97625287 97625375 -64974555 + L1MB8 LINE L1 4918 5005 -1173 1738 132 64 14 chrX 97625375 97625685 -64974245 + AluJo SINE Alu 1 324 0 4317 172 35 38 chrX 97625685 97625982 -64973948 + L1MB8 LINE L1 5005 5301 -877 2367 93 17 0 chrX 97625982 97626284 -64973646 + AluSx SINE Alu 1 307 -5 4317 172 35 38 chrX 97626284 97626492 -64973438 + L1MB8 LINE L1 5301 5508 -670 2415 88 0 0 chrX 97626492 97626788 -64973142 + AluSx SINE Alu 1 296 -16 4317 172 35 38 chrX 97626788 97627446 -64972484 + L1MB8 LINE L1 5508 6173 -5 1039 221 31 0 chrX 97627520 97627746 -64972184 + L1MD2 LINE L1 6113 6345 -14 2217 120 0 0 chrX 97627746 97628045 -64971885 + AluSx SINE Alu 1 299 -13 940 187 56 9 chrX 97628070 97628284 -64971646 + L1ME3A LINE L1 5675 5898 -266 3078 101 21 2 chrX 97628294 97628731 -64971199 + L1PA11 LINE L1 5725 6169 -5 385 161 0 0 chrX 97628746 97628808 -64971122 + AluJ/FRAM SINE Alu 232 293 -9 456 206 24 13 chrX 97628810 97628938 -64970992 + L1MD1 LINE L1 5880 6011 -164 21 0 0 0 chrX 97631665 97631686 -64968244 + AT_rich Low_complexity Low_complexity 1 21 0 446 318 112 12 chrX 97631833 97632075 -64967855 + L1M4 LINE L1 2 267 -6275 474 90 0 77 chrX 97632150 97632228 -64967702 - MSTA LTR MaLR 0 428 357 2200 127 0 9 chrX 97632228 97632543 -64967387 + AluSx SINE Alu 1 312 0 641 184 88 16 chrX 97632567 97632692 -64967238 + FLAM_A SINE Alu 1 134 -8 1884 161 226 38 chrX 97632692 97633172 -64966758 + L1M4 LINE L1 1848 2435 -4211 2870 3 0 7 chrX 97633172 97633479 -64966451 + AluYa5 SINE Alu 1 305 -6 1884 161 226 38 chrX 97633479 97633519 -64966411 + L1M4 LINE L1 2435 2466 -4180 445 205 80 75 chrX 97633616 97633816 -64966114 + L1ME3A LINE L1 5970 6170 0 306 286 13 0 chrX 97633851 97633928 -64966002 - L2 LINE L2 -217 3055 2978 2238 103 3 0 chrX 97633932 97634223 -64965707 + AluSq SINE Alu 1 292 -21 633 167 0 0 chrX 97634500 97634602 -64965328 - AluSx SINE Alu -15 297 196 1212 89 0 0 chrX 97634603 97634749 -64965181 - AluSx SINE Alu -167 146 1 381 320 72 7 chrX 97634749 97634902 -64965028 - L2 LINE L2 -566 2748 2586 718 185 0 22 chrX 97635214 97635394 -64964536 + FLAM_A SINE Alu 1 133 0 2456 73 0 25 chrX 97635569 97635883 -64964047 + AluY SINE Alu 1 306 -5 2154 182 92 0 chrX 97636289 97636679 -64963251 + MSTB LTR MaLR 1 426 0 9763 157 16 12 chrX 97636680 97638322 -64961608 + MSTB-int LTR MaLR 2 1651 0 2014 133 111 40 chrX 97638324 97638375 -64961555 + MSTA LTR MaLR 3 49 -379 2320 99 3 0 chrX 97638375 97638668 -64961262 + AluSq SINE Alu 1 294 -19 2014 133 111 40 chrX 97638668 97639014 -64960916 + MSTA LTR MaLR 49 428 0 344 250 0 0 chrX 97639440 97639516 -64960414 + MER94 DNA DNA 5 80 -54 749 192 126 0 chrX 97639518 97639669 -64960261 - MER58C DNA MER1_type -2 213 44 2284 108 3 6 chrX 97639673 97639987 -64959943 + AluSq SINE Alu 1 313 0 2137 127 7 0 chrX 97640130 97640429 -64959501 + AluSx SINE Alu 1 301 -11 1030 139 74 19 chrX 97640434 97640650 -64959280 + L1MC3 LINE L1 6858 7085 -700 228 309 11 11 chrX 97640650 97640744 -64959186 + MLT1F1 LTR MaLR 24 117 -450 1871 167 116 9 chrX 97640744 97641025 -64958905 + L1MC3 LINE L1 7181 7430 -565 1812 167 7 10 chrX 97641025 97641330 -64958600 + AluJo SINE Alu 1 304 -8 1871 167 116 9 chrX 97641330 97641550 -64958380 + L1MC3 LINE L1 7430 7995 0 855 268 27 0 chrX 97641646 97641870 -64958060 + MIR SINE MIR 23 252 -10 1238 165 57 26 chrX 97642896 97643126 -64956804 + MER8 DNA MER2_type 1 237 -2 1413 154 65 2 chrX 97643126 97643438 -64956492 + L1M4 LINE L1 5399 5743 -441 185 138 0 0 chrX 97643494 97643523 -64956407 - MER5B DNA MER1_type -18 160 132 207 233 17 33 chrX 97643543 97643603 -64956327 + L3 LINE CR1 1491 1549 -28 187 217 0 22 chrX 97643579 97643625 -64956305 + MIR3 SINE MIR 153 197 -11 * 23 68 0 0 chrX 97643933 97643977 -64955953 + AT_rich Low_complexity Low_complexity 1 44 0 6755 60 14 52 chrX 97644078 97645070 -64954860 - SVA Other Other 0 1386 433 693 26 0 26 chrX 97645087 97645203 -64954727 - SVA Other Other -520 866 754 2824 92 36 88 chrX 97645221 97645723 -64954207 - SVA Other Other -518 868 393 21 36 0 0 chrX 97645774 97645802 -64954128 + GC_rich Low_complexity Low_complexity 1 28 0 248 137 20 0 chrX 97646707 97646758 -64953172 + CT-rich Low_complexity Low_complexity 2 53 0 627 320 66 10 chrX 97647287 97647590 -64952340 + L2 LINE L2 2564 2883 -431 2236 119 0 3 chrX 97647977 97648288 -64951642 - AluSx SINE Alu -1 311 2 219 247 27 14 chrX 97648562 97648635 -64951295 + MER5B DNA MER1_type 104 177 -1 1949 107 57 4 chrX 97648972 97649253 -64950677 - AluSq SINE Alu -17 296 1 4886 114 34 29 chrX 97649397 97649725 -64950205 - L1MA3 LINE L1 -5 6300 5975 2542 84 0 0 chrX 97649725 97650036 -64949894 - AluSx SINE Alu -1 311 1 4886 114 34 29 chrX 97650036 97650508 -64949422 - L1MA3 LINE L1 -330 5975 5496 5080 125 37 41 chrX 97650510 97651815 -64948115 - L1 LINE L1 -3440 4125 2820 * 13048 171 38 13 chrX 97651814 97653881 -64946049 - L1 LINE L1 -5279 2286 157 1853 144 13 30 chrX 97653881 97654179 -64945751 + AluJb SINE Alu 5 297 -15 13048 171 38 13 chrX 97654179 97654340 -64945590 - L1 LINE L1 -7408 157 2 348 277 24 33 chrX 97654443 97654564 -64945366 + MER5B DNA MER1_type 2 123 -66 1954 101 0 4 chrX 97654564 97654822 -64945108 + AluSq SINE Alu 1 257 -56 351 0 0 0 chrX 97654826 97654865 -64945065 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 348 277 24 33 chrX 97654865 97654909 -64945021 + MER5B DNA MER1_type 126 186 -3 214 203 165 13 chrX 97654916 97654995 -64944935 - MER5B DNA MER1_type -29 149 59 933 151 0 50 chrX 97655000 97655159 -64944771 - AluJb SINE Alu -9 303 153 206 271 0 0 chrX 97655167 97655215 -64944715 + MER5A DNA MER1_type 128 175 -14 287 271 78 104 chrX 97655240 97655432 -64944498 - MER5A DNA MER1_type -1 188 2 214 315 41 0 chrX 97655433 97655506 -64944424 - L2 LINE L2 -59 3254 3179 2374 85 0 3 chrX 97655719 97656012 -64943918 - AluSx SINE Alu -20 292 1 2204 101 0 74 chrX 97656456 97656794 -64943136 - AluSq SINE Alu 0 313 1 208 214 408 0 chrX 97656970 97657068 -64942862 - L2 LINE L2 -13 3300 3163 212 365 83 57 chrX 97657240 97657541 -64942389 - L2 LINE L2 -50 3222 2914 375 290 10 0 chrX 97659425 97659525 -64940405 - MIR SINE MIR -80 182 82 300 36 18 36 chrX 97661181 97661237 -64938693 + (TA)n Simple_repeat Simple_repeat 1 55 0 724 282 28 35 chrX 97661244 97661563 -64938367 + L1ME4a LINE L1 5599 5915 -206 2472 68 0 0 chrX 97661685 97661980 -64937950 + AluSc SINE Alu 1 295 -14 1331 122 43 26 chrX 97663427 97663657 -64936273 - MER46A DNA MER2_type -1 235 2 557 256 25 49 chrX 97663680 97663730 -64936200 - MIR SINE MIR -4 258 208 2283 51 22 0 chrX 97663730 97664029 -64935901 - AluY SINE Alu 0 305 1 557 256 25 49 chrX 97664029 97664180 -64935750 - MIR SINE MIR -54 208 61 1383 154 145 44 chrX 97664180 97664524 -64935406 + L1MA4 LINE L1 5911 6289 -11 2115 113 28 0 chrX 97664662 97664946 -64934984 + AluSx SINE Alu 1 292 -20 539 288 56 13 chrX 97665024 97665257 -64934673 - MIR SINE MIR -14 248 6 683 255 0 16 chrX 97665450 97665634 -64934296 - MIR3 SINE MIR -14 194 14 399 286 29 14 chrX 97666214 97666354 -64933576 + MIR SINE MIR 121 262 0 863 227 0 0 chrX 97667127 97667290 -64932640 - FRAM SINE Alu -3 163 1 302 234 104 65 chrX 97668078 97668232 -64931698 + L1ME4a LINE L1 5786 5945 -176 2853 116 40 2 chrX 97668461 97668910 -64931020 + L1MA4 LINE L1 5829 6294 -6 1274 162 14 0 chrX 97669070 97669286 -64930644 + AluJo SINE Alu 85 303 -9 1057 204 24 24 chrX 97669610 97669865 -64930065 - L1MD3 LINE L1 -10 7985 7731 2453 90 0 16 chrX 97670328 97670640 -64929290 + AluSx SINE Alu 1 307 -5 1323 105 0 0 chrX 97670757 97670929 -64929001 + AluSg/x SINE Alu 130 301 -11 835 263 8 60 chrX 97670929 97671195 -64928735 - MIR SINE MIR -9 253 2 500 323 30 8 chrX 97671200 97671333 -64928597 - L2 LINE L2 -24 3248 3113 681 264 17 17 chrX 97671916 97672090 -64927840 - MER5B DNA MER1_type -2 176 3 857 147 0 78 chrX 97672099 97672290 -64927640 + MER5B DNA MER1_type 1 176 -2 2227 97 0 3 chrX 97672477 97672777 -64927153 - AluSq SINE Alu -14 299 1 624 247 76 0 chrX 97673109 97673267 -64926663 + MER5B DNA MER1_type 3 172 -6 907 196 71 0 chrX 97673281 97673449 -64926481 - MER5A DNA MER1_type 0 189 10 541 168 48 80 chrX 97673467 97673592 -64926338 + MER5B DNA MER1_type 4 124 -54 1617 181 3 3 chrX 97673592 97673891 -64926039 - AluJo SINE Alu -13 299 1 1166 188 56 22 chrX 97673891 97674211 -64925719 + L1MC4 LINE L1 6774 7104 -938 2420 139 47 68 chrX 97674223 97674690 -64925240 - LTR32 LTR ERVL 0 471 15 226 299 40 70 chrX 97674724 97674853 -64925077 + L1MC5 LINE L1 7000 7122 -839 2228 97 3 0 chrX 97674853 97675152 -64924778 + AluSq SINE Alu 1 300 -13 226 299 40 70 chrX 97675152 97675223 -64924707 + L1MC5 LINE L1 7122 7194 -767 1476 192 0 20 chrX 97675274 97675571 -64924359 - AluJb SINE Alu -21 291 1 29 0 0 0 chrX 97675571 97675600 -64924330 + AT_rich Low_complexity Low_complexity 1 29 0 516 273 86 55 chrX 97675600 97675704 -64924226 + L1MC4 LINE L1 7190 7289 -753 2268 96 0 3 chrX 97675704 97676005 -64923925 - AluSq SINE Alu -13 300 1 516 273 86 55 chrX 97676005 97676156 -64923774 + L1MC4 LINE L1 7289 7453 -589 1383 154 6 122 chrX 97676172 97676521 -64923409 - AluJo SINE Alu 0 314 3 295 173 0 0 chrX 97676522 97676574 -64923356 - AluJb SINE Alu -166 136 85 261 0 0 0 chrX 97676619 97676648 -64923282 + (CAA)n Simple_repeat Simple_repeat 2 30 0 326 158 3 83 chrX 97676709 97676798 -64923132 - AluJb SINE Alu -196 106 44 309 183 50 150 chrX 97676814 97676844 -64923086 + L1MC5 LINE L1 7273 7304 -657 2274 106 3 0 chrX 97676844 97677156 -64922774 - AluSp SINE Alu 0 313 1 309 183 50 150 chrX 97677156 97677245 -64922685 + L1MC5 LINE L1 7304 7380 -581 614 184 39 0 chrX 97677256 97677359 -64922571 + MER81 DNA DNA 8 114 0 238 264 168 20 chrX 97677361 97677466 -64922464 + L1MC4 LINE L1 7505 7593 -449 2028 113 7 10 chrX 97677466 97677759 -64922171 + AluSx SINE Alu 1 292 -20 238 264 168 20 chrX 97677759 97677850 -64922080 + L1MC4 LINE L1 7593 7730 -312 1914 110 0 14 chrX 97677983 97678264 -64921666 + AluSx SINE Alu 34 310 -2 2161 98 0 28 chrX 97678294 97678611 -64921319 + AluSx SINE Alu 1 308 -4 1770 171 0 0 chrX 97678876 97679169 -64920761 + AluJo SINE Alu 1 293 -19 1309 151 30 9 chrX 97679169 97679401 -64920529 + Tigger1 DNA MER2_type 2174 2410 -8 216 350 72 0 chrX 97679542 97679639 -64920291 - L2 LINE L2 -298 2974 2871 1941 122 0 30 chrX 97679720 97680015 -64919915 + AluSx SINE Alu 1 286 -26 672 162 26 0 chrX 97680095 97680212 -64919718 - FLAM_A SINE Alu -17 125 6 460 289 202 30 chrX 97680212 97680548 -64919382 - L2 LINE L2 -644 2670 2277 202 333 27 13 chrX 97680542 97680617 -64919313 - L2 LINE L2 -842 2472 2397 * 1977 91 4 7 chrX 97680725 97681000 -64918930 + AluSx SINE Alu 31 304 -8 1288 247 89 18 chrX 97681007 97681400 -64918530 + MER74B LTR ERVL 128 548 -74 1184 100 0 0 chrX 97681892 97682052 -64917878 - AluSg/x SINE Alu -8 304 145 2170 93 7 0 chrX 97682485 97682775 -64917155 + AluSx SINE Alu 1 292 -20 359 210 128 97 chrX 97683261 97683457 -64916473 - L1MC/D LINE L1 -484 5637 5513 1654 153 41 0 chrX 97683476 97683744 -64916186 - Tigger3b DNA MER2_type 0 1231 953 268 132 0 0 chrX 97683750 97683788 -64916142 + FLAM SINE Alu 86 123 -10 694 225 0 0 chrX 97683825 97683954 -64915976 + FLAM_A SINE Alu 4 132 -1 1659 147 0 0 chrX 97683969 97684227 -64915703 + AluJo SINE Alu 3 260 -52 2608 106 37 68 chrX 97684227 97684674 -64915256 - Tigger3b DNA MER2_type -2529 499 65 2600 47 38 3 chrX 97684681 97685024 -64914906 - L1PA3 LINE L1 -4 6151 5797 1321 7 0 0 chrX 97685024 97685172 -64914758 + L1PA2 LINE L1 5716 5863 -292 2144 105 3 10 chrX 97685172 97685476 -64914454 - AluSx SINE Alu -10 302 1 501 185 0 0 chrX 97685476 97685557 -64914373 - Tigger3b DNA MER2_type -1150 81 1 361 330 119 30 chrX 97685567 97685803 -64914127 + L1M4 LINE L1 4056 4312 -1834 2147 109 30 0 chrX 97685825 97686127 -64913803 + AluSx SINE Alu 1 311 -1 1633 181 3 14 chrX 97686161 97686454 -64913476 + AluJo SINE Alu 1 290 -22 966 207 0 0 chrX 97686692 97686856 -64913074 - FRAM SINE Alu -1 165 2 1798 143 7 17 chrX 97686893 97687193 -64912737 - AluJb SINE Alu -15 297 1 561 235 9 17 chrX 97687231 97687346 -64912584 + FLAM_A SINE Alu 11 124 -18 312 138 0 0 chrX 97687346 97687404 -64912526 + L1MB7 LINE L1 6127 6184 0 1441 280 59 35 chrX 97687405 97687945 -64911985 - L1MC4a LINE L1 -1943 5865 5313 1328 153 19 67 chrX 97688108 97688145 -64911785 - L1MB8 LINE L1 0 6178 6141 2141 114 3 0 chrX 97688145 97688453 -64911477 + AluSx SINE Alu 2 310 -2 1328 153 19 67 chrX 97688453 97688728 -64911202 - L1MB8 LINE L1 -37 6141 5881 368 184 73 37 chrX 97688728 97688837 -64911093 - L1MC4a LINE L1 -884 5262 5150 877 168 67 0 chrX 97688837 97688986 -64910944 - FRAM SINE Alu -17 159 1 1140 90 0 38 chrX 97688998 97689209 -64910721 - AluSq SINE Alu -9 304 3 22 35 0 0 chrX 97689209 97689238 -64910692 + AT_rich Low_complexity Low_complexity 1 29 0 2213 96 3 0 chrX 97689248 97689540 -64910390 + AluSg SINE Alu 1 293 -17 517 269 87 32 chrX 97689549 97689802 -64910128 - L1M4 LINE L1 -2828 3318 3052 615 228 99 90 chrX 97689992 97690304 -64909626 - MER96B DNA MER1_type? 0 417 103 939 133 0 14 chrX 97690304 97690447 -64909483 + AluJo SINE Alu 1 141 -171 1644 140 4 8 chrX 97690447 97690711 -64909219 + AluJb SINE Alu 34 296 -16 391 215 0 65 chrX 97690771 97690798 -64909132 - MER96B DNA MER1_type? -330 87 60 2057 93 0 32 chrX 97690798 97691108 -64908822 - AluSx SINE Alu -12 300 1 391 215 0 65 chrX 97691108 97691173 -64908757 - MER96B DNA MER1_type? -357 60 1 2174 95 3 0 chrX 97691991 97692285 -64907645 - AluSg1 SINE Alu -14 295 1 1721 164 4 0 chrX 97692997 97693324 -64906606 - AluJb SINE Alu 0 328 1 2274 99 0 0 chrX 97693710 97694014 -64905916 + AluSx SINE Alu 9 312 0 1775 172 3 10 chrX 97694562 97694696 -64905234 + AluJo SINE Alu 1 134 -178 2261 101 0 0 chrX 97694696 97695003 -64904927 + AluSx SINE Alu 3 309 -3 1775 172 3 10 chrX 97695003 97695170 -64904760 + AluJo SINE Alu 134 300 -12 587 255 126 71 chrX 97695243 97695482 -64904448 + MIR SINE MIR 11 262 0 1589 181 29 76 chrX 97696044 97696201 -64903729 + MLT1B LTR MaLR 1 164 -226 2200 94 0 0 chrX 97696201 97696498 -64903432 - AluSx SINE Alu -10 302 6 1589 181 29 76 chrX 97696498 97696749 -64903181 + MLT1B LTR MaLR 164 390 0 1477 161 63 18 chrX 97696769 97696897 -64903033 + AluJb SINE Alu 1 122 -190 1988 118 13 3 chrX 97696897 97697203 -64902727 + AluSx SINE Alu 1 309 -3 1477 161 63 18 chrX 97697203 97697360 -64902570 + AluJb SINE Alu 122 299 -13 1869 141 37 0 chrX 97698034 97698333 -64901597 + AluSx SINE Alu 3 312 0 482 185 0 30 chrX 97698333 97698468 -64901462 + GA-rich Low_complexity Low_complexity 2 132 0 1997 122 3 13 chrX 97698546 97698849 -64901081 + AluSx SINE Alu 1 300 -12 2998 200 101 146 chrX 97699145 97699584 -64900346 + L2 LINE L2 1579 2036 -1277 2124 83 0 40 chrX 97699584 97699886 -64900044 - AluSc SINE Alu -8 301 12 2998 200 101 146 chrX 97699886 97700289 -64899641 + L2 LINE L2 2036 2456 -857 566 184 54 54 chrX 97700289 97700457 -64899473 - L1MA10 LINE L1 0 6334 6167 2998 200 101 146 chrX 97700457 97700468 -64899462 + L2 LINE L2 2456 2466 -847 2312 92 0 0 chrX 97700468 97700774 -64899156 - AluSq SINE Alu -7 306 1 2998 200 101 146 chrX 97700774 97701058 -64898872 + L2 LINE L2 2466 2805 -508 1577 175 82 25 chrX 97701058 97701413 -64898517 + THE1C LTR MaLR 1 375 0 2998 200 101 146 chrX 97701413 97701622 -64898308 + L2 LINE L2 2805 3022 -291 512 184 0 0 chrX 97701622 97701709 -64898221 - MER20 DNA MER1_type 0 219 133 234 0 0 0 chrX 97701779 97701805 -64898125 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 656 254 53 35 chrX 97701816 97702044 -64897886 + L2 LINE L2 3082 3313 0 1162 264 108 75 chrX 97702046 97702333 -64897597 + HAL1 LINE L1 110 386 -2121 1929 133 0 14 chrX 97702333 97702638 -64897292 + AluSx SINE Alu 1 301 0 1162 264 108 75 chrX 97702638 97702807 -64897123 + HAL1 LINE L1 386 548 -1959 2040 107 10 0 chrX 97702807 97703096 -64896834 - AluSg SINE Alu -13 297 6 1162 264 108 75 chrX 97703096 97703332 -64896598 + HAL1 LINE L1 548 775 -1732 1696 167 0 10 chrX 97703332 97703625 -64896305 - AluJo SINE Alu -17 295 6 1162 264 108 75 chrX 97703625 97703781 -64896149 + HAL1 LINE L1 775 924 -1583 2114 135 0 0 chrX 97703781 97704093 -64895837 + AluSq SINE Alu 1 312 -1 1162 264 108 75 chrX 97704093 97704367 -64895563 + HAL1 LINE L1 924 1274 -1233 1853 122 4 0 chrX 97704379 97704649 -64895281 + AluSx SINE Alu 21 291 -21 2243 103 0 0 chrX 97704661 97704971 -64894959 + AluY SINE Alu 1 310 -1 1322 87 0 0 chrX 97704977 97705150 -64894780 + AluSq SINE Alu 129 301 -12 455 227 98 110 chrX 97705164 97705329 -64894601 + HAL1 LINE L1 1815 1980 -527 2226 110 0 0 chrX 97705329 97705639 -64894291 + AluSq SINE Alu 1 310 -3 455 227 98 110 chrX 97705639 97705668 -64894262 + HAL1 LINE L1 1980 2008 -499 2127 113 0 3 chrX 97705668 97705979 -64893951 + AluSx SINE Alu 1 310 -2 455 227 98 110 chrX 97705979 97706047 -64893883 + HAL1 LINE L1 2008 2075 -432 346 232 192 36 chrX 97706096 97706194 -64893736 + L1MC4a LINE L1 5863 5944 -1864 2349 86 3 0 chrX 97706194 97706497 -64893433 - AluSp SINE Alu -9 304 1 2133 118 0 0 chrX 97706501 97706797 -64893133 - AluSx SINE Alu -16 296 1 346 232 192 36 chrX 97706797 97706943 -64892987 + L1MC4a LINE L1 5946 6151 -1657 23 54 0 0 chrX 97706943 97706980 -64892950 + AT_rich Low_complexity Low_complexity 1 37 0 2089 117 7 0 chrX 97707105 97707405 -64892525 + AluSx SINE Alu 1 302 -10 652 196 15 23 chrX 97707418 97707551 -64892379 + FLAM_C SINE Alu 1 132 -1 2255 96 3 0 chrX 97708519 97708821 -64891109 + AluSx SINE Alu 1 303 -9 208 229 0 0 chrX 97709068 97709103 -64890827 - MIR SINE MIR -8 254 220 1341 182 0 4 chrX 97709623 97709848 -64890082 - MER58A DNA MER1_type 0 224 1 767 290 45 20 chrX 97709970 97710215 -64889715 + MIR SINE MIR 6 256 -6 2345 83 0 10 chrX 97710441 97710754 -64889176 + AluSp SINE Alu 1 310 -3 641 162 29 104 chrX 97710972 97711105 -64888825 + MER3 DNA MER1_type 1 142 -20 1798 159 0 7 chrX 97711105 97711406 -64888524 - AluJo SINE Alu -13 299 1 2339 70 0 13 chrX 97711412 97711726 -64888204 - AluSg SINE Alu 0 310 1 641 162 29 104 chrX 97711726 97711758 -64888172 + MER3 DNA MER1_type 147 160 -49 1754 172 3 7 chrX 97711971 97712279 -64887651 + AluJb SINE Alu 1 307 -5 2154 116 0 0 chrX 97712367 97712668 -64887262 + AluSx SINE Alu 1 301 -11 283 261 80 0 chrX 97712995 97713083 -64886847 - MER3 DNA MER1_type -72 137 43 210 312 43 21 chrX 97713142 97713235 -64886695 - L2 LINE L2 -1000 2314 2220 2093 104 19 10 chrX 97713283 97713592 -64886338 + AluSx SINE Alu 1 312 0 181 260 20 0 chrX 97713749 97713799 -64886131 - L2 LINE L2 0 3313 3263 186 105 132 0 chrX 97714756 97714794 -64885136 + L2 LINE L2 3210 3252 -20 219 268 0 98 chrX 97714961 97715043 -64884887 - L2 LINE L2 -3 3269 3196 1469 163 26 72 chrX 97715166 97715340 -64884590 - AluJo SINE Alu -20 292 112 2037 119 3 3 chrX 97715340 97715642 -64884288 + AluSq SINE Alu 1 302 -11 2143 100 0 0 chrX 97715649 97715939 -64883991 + AluSg SINE Alu 5 294 -16 1469 163 26 72 chrX 97715939 97716062 -64883868 - AluJo SINE Alu -206 106 1 227 225 0 0 chrX 97716102 97716142 -64883788 - L2 LINE L2 -365 2907 2868 2245 104 0 0 chrX 97716317 97716624 -64883306 + AluSg SINE Alu 1 307 -3 1962 98 6 76 chrX 97716796 97716931 -64882999 + AluSq SINE Alu 1 144 -169 2148 77 56 0 chrX 97716931 97717217 -64882713 + AluSg SINE Alu 1 302 -8 1962 98 6 76 chrX 97717217 97717396 -64882534 + AluSq SINE Alu 144 293 -20 759 153 16 0 chrX 97717401 97717525 -64882405 + AluJo/FLAM SINE Alu 5 130 -172 2387 80 3 0 chrX 97717528 97717840 -64882090 + AluSp SINE Alu 1 313 0 1976 129 7 0 chrX 97717843 97717972 -64881958 + AluSx SINE Alu 1 128 -184 246 32 0 0 chrX 97717972 97718003 -64881927 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1976 129 7 0 chrX 97718003 97718159 -64881771 + AluSx SINE Alu 128 288 -24 45 34 0 0 chrX 97718159 97718218 -64881712 + AT_rich Low_complexity Low_complexity 1 59 0 2258 90 3 0 chrX 97718220 97718521 -64881409 + AluSx SINE Alu 1 302 -10 584 263 45 50 chrX 97718800 97718998 -64880932 + MIR SINE MIR 18 214 -48 2211 75 3 20 chrX 97719001 97719296 -64880634 + AluSp SINE Alu 2 291 -22 1611 134 90 7 chrX 97719303 97719580 -64880350 + AluJo SINE Alu 1 300 -12 2012 107 17 0 chrX 97719905 97720194 -64879736 + AluSx SINE Alu 1 294 -18 831 128 0 0 chrX 97720195 97720312 -64879618 - AluJo/FLAM SINE Alu -195 117 1 384 22 0 0 chrX 97720463 97720508 -64879422 + (CA)n Simple_repeat Simple_repeat 2 46 0 1703 142 4 4 chrX 97720820 97721095 -64878835 - AluSx SINE Alu -37 275 1 552 317 25 35 chrX 97721103 97721305 -64878625 + MIR SINE MIR 52 251 -11 1840 139 26 7 chrX 97721566 97721867 -64878063 + AluJo SINE Alu 1 307 -5 1948 101 38 3 chrX 97721867 97722155 -64877775 + AluSx SINE Alu 1 298 -14 2317 87 3 0 chrX 97722798 97723109 -64876821 + AluSp SINE Alu 1 312 -1 2230 87 0 0 chrX 97723117 97723417 -64876513 + AluSg SINE Alu 1 300 -10 2189 96 0 0 chrX 97725068 97725359 -64874571 + AluSq SINE Alu 5 295 -18 251 211 56 100 chrX 97725441 97725531 -64874399 - L2 LINE L2 -1 3312 3227 732 184 94 85 chrX 97725567 97725604 -64874326 + MIR SINE MIR 37 72 -190 2288 92 0 0 chrX 97725604 97725907 -64874023 - AluSp SINE Alu -9 304 2 732 184 94 85 chrX 97725907 97726092 -64873838 + MIR SINE MIR 72 261 -1 1996 189 137 22 chrX 97726131 97726483 -64873447 + LTR49 LTR ERV1 1 311 -284 2295 66 0 10 chrX 97726483 97726786 -64873144 - AluY SINE Alu -11 300 1 2290 48 14 3 chrX 97726786 97727074 -64872856 - AluSc SINE Alu -18 291 1 1996 189 137 22 chrX 97727074 97727255 -64872675 + LTR49 LTR ERV1 599 595 0 399 21 0 0 chrX 97727255 97727303 -64872627 + (CA)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chrX 97727677 97727705 -64872225 + AT_rich Low_complexity Low_complexity 1 28 0 511 111 0 0 chrX 97728215 97728287 -64871643 + LTR19A LTR ERV1 3 74 -412 1453 94 5 5 chrX 97728287 97728488 -64871442 + AluSx SINE Alu 1 201 -111 2239 109 0 3 chrX 97728517 97728828 -64871102 - AluSq SINE Alu -3 310 1 700 158 0 0 chrX 97728829 97728949 -64870981 + AluSp/q SINE Alu 192 311 -2 2008 127 10 4 chrX 97728951 97729331 -64870599 + LTR19A LTR ERV1 62 486 0 1267 177 6 114 chrX 97729888 97729975 -64869955 - LTR8A LTR ERV1 0 727 632 2214 107 0 0 chrX 97729975 97730274 -64869656 + AluSx SINE Alu 1 299 -13 1267 177 6 114 chrX 97730274 97730519 -64869411 - LTR8A LTR ERV1 -95 632 431 300 258 32 11 chrX 97730534 97730627 -64869303 - MER5A DNA MER1_type -88 101 7 3668 144 79 20 chrX 97730721 97731408 -64868522 + LTR8A LTR ERV1 1 727 0 1882 100 0 19 chrX 97731535 97731806 -64868124 + AluSq SINE Alu 1 266 -47 545 275 81 62 chrX 97732039 97732250 -64867680 + L1ME LINE L1 5270 5493 -628 1644 146 13 23 chrX 97732250 97732551 -64867379 + AluJb SINE Alu 2 299 -13 545 275 81 62 chrX 97732551 97732724 -64867206 + L1ME LINE L1 5493 5661 -460 1781 155 7 19 chrX 97732732 97733041 -64866889 + AluSx SINE Alu 1 305 -7 2104 92 3 0 chrX 97733044 97733367 -64866563 + AluSp SINE Alu 3 326 0 219 36 0 0 chrX 97733534 97733562 -64866368 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2077 91 0 0 chrX 97733567 97733842 -64866088 - AluSq SINE Alu -38 275 1 249 59 0 0 chrX 97734946 97734980 -64864950 - HY3 scRNA scRNA -2 99 66 1631 163 0 42 chrX 97734989 97735150 -64864780 - AluJb SINE Alu -18 294 151 2121 114 0 3 chrX 97735150 97735448 -64864482 - AluSx SINE Alu -15 297 1 1631 163 0 42 chrX 97735448 97735593 -64864337 - AluJb SINE Alu -161 151 1 2524 95 102 38 chrX 97735601 97735742 -64864188 - L1PA15 LINE L1 -3 6162 6032 2142 121 0 6 chrX 97735742 97736056 -64863874 - AluSx SINE Alu 0 312 1 2524 95 102 38 chrX 97736056 97736334 -64863596 - L1PA15 LINE L1 -133 6032 5716 2041 108 34 0 chrX 97736379 97736674 -64863256 + AluSp SINE Alu 1 305 -8 1948 140 3 0 chrX 97736742 97737035 -64862895 - AluSx SINE Alu -18 294 1 652 304 61 9 chrX 97737127 97737341 -64862589 - MIR SINE MIR -3 259 35 2326 83 0 0 chrX 97737352 97737653 -64862277 - AluSg SINE Alu -9 301 1 1044 157 67 6 chrX 97737687 97737865 -64862065 - MER5A DNA MER1_type 0 189 1 427 246 36 90 chrX 97738571 97738598 -64861332 + MER5B DNA MER1_type 17 44 -134 2330 77 0 13 chrX 97738598 97738909 -64861021 - AluSq SINE Alu -5 308 2 427 246 36 90 chrX 97738909 97739048 -64860882 + MER5B DNA MER1_type 44 174 -4 2863 44 0 0 chrX 97739071 97739411 -64860519 + L1PA6 LINE L1 5810 6149 -5 617 271 9 72 chrX 97739431 97739652 -64860278 + MIR SINE MIR 51 257 -5 2172 120 0 0 chrX 97739673 97739974 -64859956 + AluSx SINE Alu 1 301 -11 2330 74 3 3 chrX 97740162 97740472 -64859458 + AluSp SINE Alu 1 310 -3 2172 109 0 0 chrX 97740982 97741285 -64858645 + AluSx SINE Alu 1 303 -9 303 77 0 0 chrX 97741291 97741330 -64858600 - U2 snRNA snRNA -149 39 1 893 94 0 58 chrX 97741516 97741654 -64858276 + AluJb SINE Alu 5 134 -178 369 325 153 0 chrX 97741654 97741817 -64858113 + MIR SINE MIR 60 247 -15 2130 99 0 39 chrX 97741817 97742129 -64857801 - AluSx SINE Alu -12 300 1 1973 252 78 2 chrX 97742238 97742711 -64857219 + Zaphod DNA AcHobo 1 509 -3522 283 294 0 0 chrX 97742713 97742781 -64857149 + MER115 DNA AcHobo 626 693 0 394 351 89 15 chrX 97742781 97743052 -64856878 + L1M4 LINE L1 4133 4423 -1723 1151 155 14 23 chrX 97743057 97743276 -64856654 - AluJo SINE Alu -95 217 1 24705 53 21 37 chrX 97743320 97743368 -64856562 + HUERS-P1 LTR ERV1 2913 2960 -3303 447 19 0 0 chrX 97743368 97743420 -64856510 + (TG)n Simple_repeat Simple_repeat 1 52 0 24705 53 21 37 chrX 97743420 97743447 -64856483 + HUERS-P1 LTR ERV1 2960 2986 -3277 2054 95 7 7 chrX 97743447 97743786 -64856144 + AluSq SINE Alu 2 340 0 24705 53 21 37 chrX 97743786 97744339 -64855591 + HUERS-P1 LTR ERV1 2986 3546 -2717 2290 82 0 7 chrX 97744339 97744643 -64855287 - AluSc SINE Alu -7 302 1 24705 53 21 37 chrX 97744643 97745231 -64854699 + HUERS-P1 LTR ERV1 3546 4142 -2121 2260 89 0 3 chrX 97745231 97745535 -64854395 - AluSx SINE Alu -9 303 1 24705 53 21 37 chrX 97745535 97745653 -64854277 + HUERS-P1 LTR ERV1 4142 4260 -2003 2382 70 13 0 chrX 97745653 97745954 -64853976 + AluSp SINE Alu 1 305 -8 24705 53 21 37 chrX 97745954 97746194 -64853736 + HUERS-P1 LTR ERV1 4260 4502 -1761 2391 91 0 0 chrX 97746194 97746503 -64853427 - AluSc SINE Alu 0 309 1 24705 53 21 37 chrX 97746503 97748328 -64851602 + HUERS-P1 LTR ERV1 4502 6263 0 5490 66 6 17 chrX 97748328 97748864 -64851066 + LTR8 LTR ERV1 1 529 -162 2192 115 0 6 chrX 97748864 97749178 -64850752 + AluSx SINE Alu 1 312 0 5490 66 6 17 chrX 97749178 97749340 -64850590 + LTR8 LTR ERV1 529 691 0 808 102 0 0 chrX 97749340 97749448 -64850482 - AluSq/x SINE Alu -205 108 1 265 243 6 48 chrX 97749451 97749586 -64850344 + L1MC/D LINE L1 5700 5827 -294 1052 172 0 78 chrX 97749588 97749832 -64850098 + AluJo SINE Alu 1 225 -87 1162 177 5 0 chrX 97749877 97750080 -64849850 + AluJo SINE Alu 1 204 -108 868 269 65 0 chrX 97750190 97750435 -64849495 + MIR SINE MIR 2 262 0 181 174 43 116 chrX 97750446 97750515 -64849415 - L2 LINE L2 -190 3082 3019 186 43 0 0 chrX 97752102 97752125 -64847805 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 188 227 23 0 chrX 97753754 97753798 -64846132 + L2 LINE L2 3262 3306 -7 319 281 39 67 chrX 97754103 97754281 -64845649 - MIR SINE MIR -62 200 28 329 282 73 68 chrX 97754364 97754570 -64845360 - L1 LINE L1 -2873 3273 3067 275 220 51 0 chrX 97754714 97754773 -64845157 + MIR SINE MIR 109 170 -92 281 301 65 0 chrX 97754810 97754903 -64845027 + MIR SINE MIR 154 252 -10 2108 112 0 0 chrX 97755004 97755300 -64844630 - AluSq SINE Alu -17 296 1 292 199 55 57 chrX 97755956 97756107 -64843823 - MIR SINE MIR -36 226 80 1778 87 4 0 chrX 97756329 97756571 -64843359 + AluSp SINE Alu 68 310 -3 1134 139 31 125 chrX 97756824 97756939 -64842991 - L1ME3A LINE L1 -9 6161 6037 2115 126 0 0 chrX 97756939 97757248 -64842682 + AluSx SINE Alu 2 310 -2 1134 139 31 125 chrX 97757248 97757419 -64842511 - L1ME3A LINE L1 -133 6037 5902 2069 125 0 6 chrX 97757674 97757987 -64841943 + AluSx SINE Alu 1 311 -1 2253 82 0 32 chrX 97758002 97758317 -64841613 + AluSc SINE Alu 1 305 -4 2024 141 0 0 chrX 97758477 97758776 -64841154 - AluSx SINE Alu -13 299 1 204 315 130 22 chrX 97758890 97758982 -64840948 - MIR SINE MIR -77 131 30 2241 95 3 0 chrX 97759305 97759611 -64840319 - AluSp SINE Alu -6 307 1 1656 114 0 30 chrX 97760132 97760396 -64839534 + AluSg SINE Alu 54 309 -1 1263 128 0 0 chrX 97760396 97760583 -64839347 + AluSg/x SINE Alu 124 310 0 1735 110 7 18 chrX 97760692 97760965 -64838965 + AluJb SINE Alu 8 277 -35 1821 133 25 0 chrX 97760979 97761265 -64838665 + AluSx SINE Alu 1 293 -19 397 193 7 17 chrX 97761696 97761831 -64838099 - MER96B DNA MER1_type? -238 179 5 870 186 0 50 chrX 97761909 97762129 -64837801 + AluJo SINE Alu 93 301 -11 268 203 27 81 chrX 97762130 97762204 -64837726 - MIR SINE MIR -181 81 12 631 314 158 57 chrX 97762363 97762513 -64837417 + L2 LINE L2 1940 2073 -1240 1866 113 32 48 chrX 97762513 97762823 -64837107 - AluSx SINE Alu -7 305 1 631 314 158 57 chrX 97762823 97763192 -64836738 + L2 LINE L2 2073 2403 -910 2260 82 0 13 chrX 97763192 97763496 -64836434 - AluSx SINE Alu -12 300 1 631 314 158 57 chrX 97763496 97763658 -64836272 + L2 LINE L2 2403 2547 -766 1881 139 3 10 chrX 97763658 97763960 -64835970 - AluJo SINE Alu -12 300 1 631 314 158 57 chrX 97763960 97764521 -64835409 + L2 LINE L2 2547 3297 -16 180 152 0 0 chrX 97764551 97764584 -64835346 + A-rich Low_complexity Low_complexity 1 33 0 249 242 202 24 chrX 97764796 97764920 -64835010 + L2 LINE L2 3163 3308 -5 1923 94 31 35 chrX 97764933 97765253 -64834677 + AluSx SINE Alu 1 319 0 2197 84 0 0 chrX 97765642 97765969 -64833961 - AluSx SINE Alu 0 327 1 2243 143 8 8 chrX 97766059 97766424 -64833506 - MLT1A1 LTR MaLR 0 365 1 2024 113 10 0 chrX 97766479 97766770 -64833160 - AluSx SINE Alu -18 294 1 216 0 0 0 chrX 97767643 97767667 -64832263 + (TG)n Simple_repeat Simple_repeat 1 24 0 202 216 0 0 chrX 97767667 97767704 -64832226 + (CACG)n Simple_repeat Simple_repeat 3 39 0 1939 149 3 0 chrX 97768875 97769183 -64830747 - AluJb SINE Alu -3 309 1 350 258 117 16 chrX 97769414 97769542 -64830388 + MIR3 SINE MIR 65 205 -3 975 316 54 26 chrX 97770924 97771390 -64828540 + L2 LINE L2 2425 2903 -411 388 182 10 10 chrX 97771390 97771489 -64828441 + CT-rich Low_complexity Low_complexity 2 100 0 2219 85 10 26 chrX 97771500 97771809 -64828121 + AluSx SINE Alu 1 301 -11 352 154 0 0 chrX 97771825 97771877 -64828053 - Alu SINE Alu -247 52 1 869 284 86 54 chrX 97771881 97772133 -64827797 + L2 LINE L2 2893 3164 -149 1779 181 3 3 chrX 97772133 97772443 -64827487 - AluJb SINE Alu -2 310 1 869 284 86 54 chrX 97772443 97772598 -64827332 + L2 LINE L2 3164 3313 0 2031 117 7 29 chrX 97772771 97773078 -64826852 - AluSx SINE Alu -12 300 1 188 345 0 36 chrX 97773289 97773344 -64826586 - L2 LINE L2 -19 3253 3201 264 260 164 0 chrX 97773759 97773832 -64826098 - L2 LINE L2 -1 3312 3228 251 178 44 0 chrX 97773842 97773887 -64826043 - MER5B DNA MER1_type -1 177 131 600 240 7 34 chrX 97773926 97774072 -64825858 - MER5B DNA MER1_type -36 142 1 1659 192 24 0 chrX 97774240 97774527 -64825403 - AluJo SINE Alu -16 296 3 27 39 0 19 chrX 97774813 97774852 -64825078 + AT_rich Low_complexity Low_complexity 1 40 -11 189 0 0 0 chrX 97774852 97774873 -64825057 + (CA)n Simple_repeat Simple_repeat 2 22 0 27 39 0 19 chrX 97774873 97774885 -64825045 + AT_rich Low_complexity Low_complexity 40 51 0 943 124 0 16 chrX 97774886 97775015 -64824915 - FLAM_C SINE Alu -5 128 2 2132 105 0 35 chrX 97775030 97775345 -64824585 - AluY SINE Alu -7 304 1 2278 91 0 7 chrX 97775352 97775649 -64824281 - AluSg1 SINE Alu -14 295 1 2284 101 3 13 chrX 97775680 97775996 -64823934 - AluSp SINE Alu 0 313 1 184 174 152 22 chrX 97776265 97776311 -64823619 - MIR3 SINE MIR -17 191 140 2251 122 3 0 chrX 97776318 97776629 -64823301 - AluSx SINE Alu 0 312 1 306 211 100 11 chrX 97776771 97776861 -64823069 - MIR3 SINE MIR -21 187 90 1689 146 54 27 chrX 97776934 97777229 -64822701 + AluJo SINE Alu 1 303 -9 189 200 0 67 chrX 97777487 97777547 -64822383 - L3 LINE CR1 -1302 275 220 2440 67 3 0 chrX 97777598 97777898 -64822032 + AluY SINE Alu 1 301 -10 1035 186 0 0 chrX 97777938 97778094 -64821836 - FRAM SINE Alu -10 156 1 2039 66 0 0 chrX 97778773 97779014 -64820916 - AluSq SINE Alu -14 299 59 2142 138 3 0 chrX 97779135 97779440 -64820490 + AluJo SINE Alu 1 306 -6 33 25 0 0 chrX 97779493 97779533 -64820397 + AT_rich Low_complexity Low_complexity 1 40 0 243 77 0 26 chrX 97779666 97779705 -64820225 - L1MB7 LINE L1 -13 6171 6134 2393 96 0 0 chrX 97779705 97780008 -64819922 - AluSq SINE Alu -6 307 5 1252 136 0 10 chrX 97780023 97780222 -64819708 - AluSq SINE Alu -12 301 105 253 105 0 26 chrX 97780241 97780279 -64819651 - AluSg/x SINE Alu -136 164 128 832 181 0 0 chrX 97780282 97780409 -64819521 - AluJo/FLAM SINE Alu -174 128 2 1623 176 0 4 chrX 97780436 97780692 -64819238 - AluJb SINE Alu -18 294 40 901 168 7 19 chrX 97780696 97780851 -64819079 - AluJb SINE Alu -159 153 1 642 126 0 29 chrX 97780854 97780957 -64818973 - L1MB7 LINE L1 -67 6117 6018 1964 133 0 7 chrX 97781004 97781297 -64818633 - AluJb SINE Alu -16 296 6 2423 88 3 0 chrX 97781431 97781736 -64818194 - AluSp SINE Alu -7 306 1 191 369 117 24 chrX 97783344 97783634 -64816296 - L2 LINE L2 -404 2910 2594 6007 162 63 23 chrX 97783648 97784107 -64815823 + Charlie1a DNA MER1_type 7 446 -2315 2399 86 0 0 chrX 97784107 97784398 -64815532 + AluSc SINE Alu 1 291 -18 6007 162 63 23 chrX 97784398 97785075 -64814855 + Charlie1a DNA MER1_type 446 1189 -266 471 125 0 0 chrX 97785101 97785165 -64814765 - AluS SINE Alu -243 70 7 272 164 18 0 chrX 97785184 97785239 -64814691 - Alu SINE Alu -6 302 247 209 194 0 0 chrX 97785502 97785538 -64814392 + T-rich Low_complexity Low_complexity 1 36 0 369 0 0 0 chrX 97785638 97785679 -64814251 + (CA)n Simple_repeat Simple_repeat 2 42 0 2044 97 68 4 chrX 97785686 97785965 -64813965 - AluSp SINE Alu -16 297 1 401 308 117 1 chrX 97786096 97786320 -64813610 - L1MEc LINE L1 -4661 1829 1467 2078 108 3 7 chrX 97786330 97786645 -64813285 + AluSx SINE Alu 1 314 0 1813 143 23 46 chrX 97786646 97786997 -64812933 - L1MB8 LINE L1 -9 6169 5827 2251 104 0 3 chrX 97786997 97787294 -64812636 - AluSp SINE Alu -15 298 3 2282 102 0 7 chrX 97787314 97787619 -64812311 - AluSq SINE Alu -10 303 1 560 108 20 49 chrX 97787625 97787727 -64812203 - AluJ/FRAM SINE Alu 0 312 214 286 125 21 0 chrX 97787732 97787780 -64812150 + Alu SINE Alu 252 300 -2 1122 198 0 0 chrX 97787832 97788019 -64811911 - AluJo SINE Alu -125 187 1 2087 154 6 6 chrX 97788020 97788384 -64811546 - L1MB4 LINE L1 -35 6145 5782 1319 191 103 58 chrX 97788385 97788565 -64811365 - MER2 DNA MER2_type 0 345 175 1223 103 175 0 chrX 97788565 97788759 -64811171 - MER30 DNA MER1_type 0 230 3 1319 191 103 58 chrX 97788759 97788907 -64811023 - MER2 DNA MER2_type -170 175 2 2890 175 13 14 chrX 97788907 97789465 -64810465 - L1MB4 LINE L1 -397 5783 5230 277 273 58 124 chrX 97789473 97789563 -64810367 - L1MEc LINE L1 -5538 834 740 2200 84 28 7 chrX 97789563 97789850 -64810080 - AluSp SINE Alu -20 293 1 277 273 58 124 chrX 97789850 97790089 -64809841 - L1MEc LINE L1 -5632 740 527 384 320 70 54 chrX 97790361 97790692 -64809238 - L2 LINE L2 -2554 760 425 386 77 62 46 chrX 97790913 97790978 -64808952 - MADE1 DNA Mariner -14 66 1 2329 97 3 0 chrX 97791254 97791553 -64808377 + AluSp SINE Alu 1 300 -13 1043 181 121 0 chrX 97791768 97791967 -64807963 - MER58A DNA MER1_type -1 223 1 300 182 68 23 chrX 97792086 97792174 -64807756 + L1ME LINE L1 5766 5857 -264 849 143 0 0 chrX 97792228 97792347 -64807583 + FLAM_C SINE Alu 1 119 -24 386 322 177 31 chrX 97793173 97793232 -64806698 - L2 LINE L2 -33 3239 3190 2309 87 3 3 chrX 97793232 97793531 -64806399 - AluSx SINE Alu -13 299 1 386 322 177 31 chrX 97793531 97793641 -64806289 - L2 LINE L2 -82 3190 3097 2236 92 10 10 chrX 97793641 97793944 -64805986 - AluSq SINE Alu -10 303 1 386 322 177 31 chrX 97793944 97794124 -64805806 - L2 LINE L2 -175 3097 2838 2296 96 0 7 chrX 97794158 97794460 -64805470 - AluSx SINE Alu -12 300 1 303 216 0 52 chrX 97794734 97794831 -64805099 - HAL1 LINE L1 -1455 1052 961 2094 82 37 0 chrX 97794953 97795253 -64804677 + AluSg SINE Alu 3 312 0 290 268 74 53 chrX 97795852 97795940 -64803990 - HAL1 LINE L1 -1554 953 868 2023 125 0 10 chrX 97795940 97796235 -64803695 - AluJo SINE Alu -12 300 9 290 268 74 53 chrX 97796235 97796336 -64803594 - HAL1 LINE L1 -1639 868 760 414 0 0 0 chrX 97796446 97796492 -64803438 + (TG)n Simple_repeat Simple_repeat 2 47 0 1434 192 70 67 chrX 97796500 97796901 -64803029 - MLT2C2 LTR ERVL -59 405 4 2807 96 11 16 chrX 97796901 97797278 -64802652 + THE1C LTR MaLR 1 375 0 1098 246 134 50 chrX 97797350 97797741 -64802189 - HAL1 LINE L1 -1982 525 84 2167 138 0 3 chrX 97797741 97798053 -64801877 - AluSx SINE Alu -1 311 1 1098 246 134 50 chrX 97798053 97798145 -64801785 - HAL1 LINE L1 -2423 84 1 1447 161 73 47 chrX 97800074 97800271 -64799659 - AluJo SINE Alu 0 318 110 2152 111 0 16 chrX 97800271 97800408 -64799522 + AluSx SINE Alu 1 139 -173 2328 88 7 0 chrX 97800408 97800704 -64799226 + AluSp SINE Alu 1 298 -15 2152 111 0 16 chrX 97800704 97800872 -64799058 + AluSx SINE Alu 139 301 -11 1447 161 73 47 chrX 97800872 97800985 -64798945 - AluJo SINE Alu -208 110 1 21 0 0 0 chrX 97801549 97801570 -64798360 + AT_rich Low_complexity Low_complexity 1 21 0 2135 130 3 0 chrX 97802510 97802810 -64797120 + AluJb SINE Alu 3 303 -9 219 246 0 0 chrX 97803044 97803101 -64796829 - L2 LINE L2 0 3272 3216 322 371 81 5 chrX 97803101 97803311 -64796619 + L2 LINE L2 2980 3205 -67 1693 164 0 66 chrX 97803348 97803666 -64796264 - AluJb SINE Alu -15 297 1 761 274 119 22 chrX 97803698 97804059 -64795871 - L2 LINE L2 -815 2499 2104 22 35 0 0 chrX 97804250 97804279 -64795651 + AT_rich Low_complexity Low_complexity 1 29 0 403 208 75 42 chrX 97805133 97805253 -64794677 - L2 LINE L2 0 3313 3190 189 0 0 0 chrX 97805673 97805694 -64794236 + (T)n Simple_repeat Simple_repeat 1 21 0 367 210 0 12 chrX 97805773 97805854 -64794076 - MER116 DNA Mariner 0 80 1 615 337 95 71 chrX 97805906 97807097 -64792833 - L2 LINE L2 -1135 2179 935 2238 92 35 0 chrX 97807097 97807381 -64792549 + AluSx SINE Alu 1 294 -18 615 337 95 71 chrX 97807381 97807853 -64792077 - L2 LINE L2 -2379 935 476 2234 91 0 7 chrX 97808082 97808378 -64791552 - AluSx SINE Alu -18 294 1 230 250 92 55 chrX 97809237 97809268 -64790662 - L1ME LINE L1 -337 5784 5756 1974 173 0 0 chrX 97809268 97809568 -64790362 - AluJo SINE Alu -12 300 1 230 250 92 55 chrX 97809568 97809700 -64790230 - L1ME LINE L1 -365 5756 5615 465 327 173 22 chrX 97809934 97810292 -64789638 + L3 LINE CR1 1094 1505 -72 2320 110 0 0 chrX 97810335 97810643 -64789287 - AluSq SINE Alu -5 308 1 2123 99 35 0 chrX 97810698 97810981 -64788949 - AluSc SINE Alu -16 293 1 1989 155 0 0 chrX 97810985 97811281 -64788649 - AluJb SINE Alu -16 296 1 1130 53 0 0 chrX 97811311 97811444 -64788486 - AluSq/x SINE Alu -179 133 1 2419 85 0 7 chrX 97811444 97811750 -64788180 - AluSx SINE Alu -8 304 1 244 111 0 0 chrX 97811777 97811813 -64788117 + L1MA3 LINE L1 6270 6305 0 242 274 18 110 chrX 97811941 97812105 -64787825 + L3 LINE CR1 1381 1529 -48 2536 67 0 6 chrX 97812178 97812491 -64787439 - AluY SINE Alu 0 311 1 22 35 0 0 chrX 97813423 97813452 -64786478 + AT_rich Low_complexity Low_complexity 1 29 0 1832 131 21 38 chrX 97813709 97813999 -64785931 - AluSc SINE Alu -24 285 1 1727 175 18 0 chrX 97814101 97814387 -64785543 - AluJo SINE Alu -21 291 1 309 268 39 78 chrX 97814905 97815071 -64784859 + MER20B DNA MER1_type 56 218 -1 2211 96 11 0 chrX 97815162 97815442 -64784488 + AluSx SINE Alu 17 299 -13 2177 97 7 17 chrX 97815895 97816184 -64783746 - AluSx SINE Alu -26 286 1 2270 118 16 0 chrX 97816432 97816738 -64783192 - AluSx SINE Alu -1 311 1 1667 186 14 0 chrX 97816742 97817038 -64782892 - AluJb SINE Alu -12 300 1 618 114 0 0 chrX 97817982 97818061 -64781869 - MADE1 DNA Mariner -1 79 1 2342 73 14 3 chrX 97819102 97819391 -64780539 - AluSq SINE Alu -21 292 1 2250 54 0 0 chrX 97819572 97819832 -64780098 - L1PA8 LINE L1 0 6172 5913 287 387 60 13 chrX 97820628 97820778 -64779152 - L2 LINE L2 -20 3252 3096 560 311 98 52 chrX 97820874 97821202 -64778728 + L3 LINE CR1 461 803 -774 269 341 139 44 chrX 97821227 97821537 -64778393 - L2 LINE L2 -4 3268 2916 1090 249 4 9 chrX 97821537 97821762 -64778168 - MER58A DNA MER1_type 0 224 1 269 341 139 44 chrX 97821762 97821814 -64778116 - L2 LINE L2 -356 2916 2871 278 253 132 109 chrX 97821814 97821857 -64778073 - MER5B DNA MER1_type 0 178 137 2444 95 0 0 chrX 97821857 97822162 -64777768 - AluSx SINE Alu -7 305 1 278 253 132 109 chrX 97822162 97822292 -64777638 - MER5B DNA MER1_type -41 137 1 1647 163 10 33 chrX 97822724 97823025 -64776905 - AluJb SINE Alu -18 294 1 30 45 0 0 chrX 97823027 97823071 -64776859 + AT_rich Low_complexity Low_complexity 1 44 0 298 327 83 30 chrX 97823153 97823279 -64776651 - L1MEd LINE L1 -5235 884 766 180 0 0 0 chrX 97823279 97823299 -64776631 + (TG)n Simple_repeat Simple_repeat 1 20 0 298 327 83 30 chrX 97823299 97823511 -64776419 - L1MEd LINE L1 -5353 766 528 2309 92 0 13 chrX 97823903 97824219 -64775711 + AluSx SINE Alu 1 312 0 6105 187 46 48 chrX 97824230 97824425 -64775505 - L1MB8 LINE L1 -55 6123 5929 2283 72 7 7 chrX 97824425 97824718 -64775212 - AluSg SINE Alu -17 293 1 6105 187 46 48 chrX 97824718 97824772 -64775158 - L1MB8 LINE L1 -249 5929 5876 1841 99 78 18 chrX 97824772 97825055 -64774875 - AluSx SINE Alu -10 302 3 6105 187 46 48 chrX 97825055 97825638 -64774292 - L1MB8 LINE L1 -302 5876 5293 1548 178 49 23 chrX 97825638 97825942 -64773988 - AluJb SINE Alu 0 312 1 6105 187 46 48 chrX 97825942 97826641 -64773289 - L1MB8 LINE L1 -885 5293 4594 2112 119 0 41 chrX 97826641 97826959 -64772971 + AluSx SINE Alu 1 305 -7 6105 187 46 48 chrX 97826959 97827558 -64772372 - L1MB8 LINE L1 -1584 4594 3962 2258 98 7 0 chrX 97827558 97827845 -64772085 - AluSq SINE Alu -24 289 1 6105 187 46 48 chrX 97827845 97828045 -64771885 - L1MB8 LINE L1 -2216 3962 3763 2210 108 10 0 chrX 97828365 97828662 -64771268 - AluSq SINE Alu -10 303 4 240 35 0 0 chrX 97828824 97828853 -64771077 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 5311 79 6 6 chrX 97828863 97829547 -64770383 - L1PB1 LINE L1 -3 6148 5465 262 287 53 11 chrX 97829615 97829709 -64770221 - MIR SINE MIR -92 170 73 1775 188 0 7 chrX 97829721 97830025 -64769905 + AluJo SINE Alu 1 302 -10 3160 141 16 4 chrX 97830059 97830569 -64769361 - L1MA4 LINE L1 -40 6260 5745 348 203 0 0 chrX 97830569 97830628 -64769302 - L1P LINE L1 -1533 4613 4555 2376 99 3 0 chrX 97830628 97830932 -64768998 - AluSq SINE Alu -8 305 1 931 270 35 93 chrX 97830940 97830988 -64768942 - L2 LINE L2 -575 2739 2690 2143 128 0 0 chrX 97830988 97831286 -64768644 - AluSx SINE Alu -14 298 1 931 270 35 93 chrX 97831286 97831527 -64768403 - L2 LINE L2 -624 2690 2436 2488 48 0 3 chrX 97831527 97831817 -64768113 - AluY SINE Alu -22 289 1 2256 103 0 10 chrX 97831817 97832117 -64767813 - AluSq SINE Alu -16 297 1 931 270 35 93 chrX 97832117 97832373 -64767557 - L2 LINE L2 -876 2438 2224 1752 218 89 20 chrX 97832516 97832728 -64767202 + HsTC2 DNA Tc2 1279 1475 -423 2271 102 6 29 chrX 97832728 97833043 -64766887 - AluSg SINE Alu -2 308 1 1752 218 89 20 chrX 97833043 97833064 -64766866 + HsTC2 DNA Tc2 1475 1493 -405 1066 145 38 0 chrX 97833064 97833250 -64766680 + L1MA6 LINE L1 6108 6300 0 1752 218 89 20 chrX 97833250 97833510 -64766420 + HsTC2 DNA Tc2 1493 1807 -91 816 141 23 23 chrX 97833515 97833643 -64766287 - FLAM_C SINE Alu -14 129 2 208 51 26 26 chrX 97833840 97833879 -64766051 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1658 162 6 48 chrX 97834215 97834290 -64765640 + AluJo SINE Alu 1 78 -234 1986 118 4 0 chrX 97834290 97834593 -64765337 - AluSx SINE Alu 0 306 3 1658 162 6 48 chrX 97834593 97834830 -64765100 + AluJo SINE Alu 78 301 -11 23 0 0 0 chrX 97834830 97834853 -64765077 + AT_rich Low_complexity Low_complexity 1 23 0 230 179 18 0 chrX 97835924 97835980 -64763950 + (TG)n Simple_repeat Simple_repeat 2 58 0 2168 81 50 3 chrX 97836110 97836393 -64763537 + AluSg SINE Alu 2 297 -13 598 193 0 76 chrX 97836583 97836682 -64763248 - L2 LINE L2 0 3313 3227 2112 144 3 0 chrX 97836682 97836987 -64762943 - AluSx SINE Alu -6 306 1 598 193 0 76 chrX 97836987 97837032 -64762898 - L2 LINE L2 -86 3227 3180 930 137 8 0 chrX 97837083 97837240 -64762690 - L1M4 LINE L1 -2202 3944 3785 2073 260 184 13 chrX 97837240 97838201 -64761729 - L2 LINE L2 -230 3083 1957 2347 97 0 10 chrX 97838500 97838809 -64761121 - AluSc SINE Alu -3 306 1 2257 99 14 0 chrX 97839116 97839409 -64760521 - AluSc SINE Alu -12 297 1 21 0 0 0 chrX 97839805 97839826 -64760104 + AT_rich Low_complexity Low_complexity 1 21 0 401 323 95 22 chrX 97839957 97840189 -64759741 + L1MB8 LINE L1 11 259 -6600 500 221 37 104 chrX 97840353 97840516 -64759414 + L1MB8 LINE L1 1066 1217 -5642 2206 90 4 0 chrX 97840639 97840916 -64759014 + AluSx SINE Alu 1 278 -34 261 0 0 0 chrX 97840917 97840946 -64758984 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1420 196 100 10 chrX 97841084 97841659 -64758271 + L1MB8 LINE L1 1217 1956 -4899 629 217 0 29 chrX 97841654 97841691 -64758239 + L1MB8 LINE L1 4547 4584 -2373 * 5972 128 151 10 chrX 97841691 97842769 -64757161 + Tigger3b DNA MER2_type 1 1230 -1 629 217 0 29 chrX 97842769 97842869 -64757061 + L1MB8 LINE L1 4584 4680 -2277 * 3217 203 81 66 chrX 97842866 97842991 -64756939 + L1MB8 LINE L1 5275 5397 -1592 1752 180 14 0 chrX 97842991 97843286 -64756644 - AluJo SINE Alu -13 299 1 3217 203 81 66 chrX 97843286 97843798 -64756132 + L1MB8 LINE L1 5397 5900 -1089 1514 194 42 0 chrX 97843798 97844082 -64755848 - AluJb SINE Alu -16 296 1 3217 203 81 66 chrX 97844082 97845119 -64754811 + L1MB8 LINE L1 5900 6969 -20 2448 73 3 0 chrX 97845367 97845668 -64754262 - AluSc SINE Alu -7 302 1 1093 118 0 0 chrX 97845670 97845822 -64754108 - FRAM SINE Alu -5 171 20 1030 209 22 7 chrX 97845943 97846220 -64753710 + L1 LINE L1 3278 3558 -2588 3858 135 30 36 chrX 97846225 97847176 -64752754 + L1PA16 LINE L1 5254 6157 -9 2314 87 10 0 chrX 97847181 97847481 -64752449 + AluSp SINE Alu 1 303 -10 23 54 0 0 chrX 97847489 97847526 -64752404 + AT_rich Low_complexity Low_complexity 1 37 0 331 137 21 0 chrX 97847614 97847684 -64752246 - L1 LINE L1 -927 5219 5143 6109 125 62 14 chrX 97848009 97849263 -64750667 - L1MA4A LINE L1 0 6303 4970 * 6835 219 29 21 chrX 97849260 97850720 -64749210 - L1M2 LINE L1 -5377 1472 2 2544 79 0 6 chrX 97850751 97851066 -64748864 - AluSq SINE Alu 0 313 1 4553 165 43 24 chrX 97851364 97851866 -64748064 - L1MB5 LINE L1 -14 6658 6167 2521 62 3 3 chrX 97851866 97852175 -64747755 - AluY SINE Alu -2 309 1 4553 165 43 24 chrX 97852175 97852492 -64747438 - L1MB5 LINE L1 -505 6167 5858 1978 157 0 13 chrX 97852492 97852792 -64747138 - AluJb SINE Alu -16 296 1 4553 165 43 24 chrX 97852792 97853121 -64746809 - L1MB5 LINE L1 -814 5858 5482 1076 201 5 0 chrX 97853123 97853322 -64746608 - AluJo SINE Alu -13 299 100 6315 212 28 33 chrX 97853322 97854305 -64745625 - L1MB5 LINE L1 -1161 5483 4497 1605 161 29 7 chrX 97854305 97854579 -64745351 - AluJb SINE Alu -3 309 30 6315 212 28 33 chrX 97854579 97854602 -64745328 - L1MB5 LINE L1 -2147 4497 4475 2000 134 51 0 chrX 97854602 97854894 -64745036 - AluSx SINE Alu -5 307 1 6315 212 28 33 chrX 97854894 97855476 -64744454 - L1MB5 LINE L1 -2169 4475 3902 972 80 0 0 chrX 97855476 97855601 -64744329 - AluSg SINE Alu -11 299 175 3028 44 3 0 chrX 97855601 97855944 -64743986 - LTR14A LTR ERVK 0 344 1 763 67 8 76 chrX 97855947 97856066 -64743864 - HERVK14 LTR ERVK 0 5945 5835 331 180 0 36 chrX 97856066 97856137 -64743793 - MER41C LTR ERV1 -493 61 6 48941 42 6 3 chrX 97856139 97861887 -64738043 - HERVK14 LTR ERVK -183 5762 1 2910 53 12 0 chrX 97861887 97862227 -64737703 - LTR14A LTR ERVK 0 344 1 1192 86 0 86 chrX 97862228 97862403 -64737527 - AluSg SINE Alu -128 182 23 28 29 0 0 chrX 97862413 97862448 -64737482 + AT_rich Low_complexity Low_complexity 1 35 0 1961 160 34 8 chrX 97862455 97862811 -64737119 - L1MA6 LINE L1 0 6300 5936 23 33 0 0 chrX 97863793 97863823 -64736107 + GC_rich Low_complexity Low_complexity 1 30 0 3595 121 30 87 chrX 97864106 97864867 -64735063 - L1MA6 LINE L1 -349 5951 5235 769 330 15 21 chrX 97864864 97865194 -64734736 - L1M2a LINE L1 -6838 330 3 * 2515 239 66 7 chrX 97865195 97866233 -64733697 - L1MB5 LINE L1 -2741 3903 2927 2104 101 36 0 chrX 97866233 97866511 -64733419 + AluSx SINE Alu 1 288 -24 228 67 0 0 chrX 97866511 97866541 -64733389 + (TA)n Simple_repeat Simple_repeat 2 31 0 2515 239 66 7 chrX 97866541 97866620 -64733310 - L1MB5 LINE L1 -3716 2928 2702 2197 101 0 19 chrX 97866636 97866965 -64732965 + AluSx SINE Alu 2 312 0 701 280 41 16 chrX 97866984 97867298 -64732632 - L1MB5 LINE L1 -4123 2523 2202 1909 171 0 7 chrX 97867310 97867614 -64732316 - AluSx SINE Alu -10 302 1 4881 200 46 23 chrX 97867614 97868682 -64731248 - L1MB5 LINE L1 -5447 1095 4 848 226 144 14 chrX 97868710 97869078 -64730852 - L1MC5 LINE L1 -278 7683 7268 2526 80 0 0 chrX 97869162 97869473 -64730457 + AluSx SINE Alu 1 311 -1 1903 166 0 0 chrX 97869758 97870048 -64729882 + AluJb SINE Alu 1 290 -22 336 310 72 29 chrX 97870118 97870278 -64729652 - MIR SINE MIR -63 145 5 2589 56 0 0 chrX 97870319 97870621 -64729309 - AluSg SINE Alu -8 302 1 2285 105 0 0 chrX 97870623 97870918 -64729012 - AluSx SINE Alu -15 297 3 831 211 0 0 chrX 97871995 97872155 -64727775 - FLAM_A SINE Alu 0 160 1 2847 230 52 38 chrX 97872267 97872501 -64727429 - L1ME3 LINE L1 -71 6091 5862 2441 87 7 3 chrX 97872501 97872811 -64727119 - AluSx SINE Alu -1 311 1 2847 230 52 38 chrX 97872811 97873395 -64726535 - L1ME3 LINE L1 -300 5862 5288 1777 168 0 38 chrX 97873395 97873710 -64726220 - AluJo SINE Alu -9 303 1 2847 230 52 38 chrX 97873710 97873941 -64725989 - L1ME3 LINE L1 -874 5288 5062 1065 211 98 0 chrX 97873941 97874145 -64725785 + MER58A DNA MER1_type 1 224 0 2847 230 52 38 chrX 97874145 97874461 -64725469 - L1ME3 LINE L1 -1100 5062 4752 2415 53 0 0 chrX 97874461 97874774 -64725156 - AluY SINE Alu 0 313 1 2847 230 52 38 chrX 97874774 97874841 -64725089 - L1ME3 LINE L1 -1410 4752 4687 614 113 10 0 chrX 97874841 97874938 -64724992 - L1MA7 LINE L1 -2 6289 6192 2847 230 52 38 chrX 97874938 97875116 -64724814 - L1ME3 LINE L1 -1475 4687 4456 26 0 0 0 chrX 97875129 97875155 -64724775 + AT_rich Low_complexity Low_complexity 1 26 0 465 300 0 65 chrX 97876443 97876613 -64723317 - L3 LINE CR1 -215 1362 1204 630 213 49 6 chrX 97876728 97876892 -64723038 + L1ME3A LINE L1 5781 5951 -219 292 122 0 0 chrX 97876912 97876961 -64722969 + Alu SINE Alu 254 302 0 519 211 48 27 chrX 97877085 97877232 -64722698 + L1ME3A LINE L1 6020 6169 -1 2066 139 3 3 chrX 97877232 97877542 -64722388 + AluSx SINE Alu 1 310 -2 324 253 25 0 chrX 97877667 97877746 -64722184 - LTR33A LTR ERVL -1 522 442 2382 96 0 0 chrX 97877746 97878047 -64721883 + AluSx SINE Alu 1 301 -11 1756 142 14 11 chrX 97878053 97878328 -64721602 + AluJo SINE Alu 1 276 -36 675 128 0 0 chrX 97878348 97878442 -64721488 + L1PB2 LINE L1 6025 6118 -33 432 206 63 8 chrX 97878729 97878855 -64721075 + MIR SINE MIR 130 262 0 257 274 0 16 chrX 97878871 97878933 -64720997 - L2 LINE L2 -6 3307 3247 229 263 0 0 chrX 97878928 97878985 -64720945 + MIR SINE MIR 167 223 -39 * 1523 162 42 0 chrX 97879095 97879213 -64720717 - AluSq SINE Alu -62 251 139 279 0 0 0 chrX 97879213 97879244 -64720686 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1523 162 42 0 chrX 97879244 97879366 -64720564 - AluSq SINE Alu -174 139 1 2198 126 0 0 chrX 97879376 97879678 -64720252 - AluSx SINE Alu -10 302 1 897 166 7 7 chrX 97879999 97880150 -64719780 - MLT1B LTR MaLR 0 390 240 475 338 86 37 chrX 97880205 97880673 -64719257 + L2 LINE L2 2543 3035 -237 196 304 63 38 chrX 97881666 97881745 -64718185 + L2 LINE L2 3216 3296 -17 2411 80 0 22 chrX 97881939 97882251 -64717679 - AluSx SINE Alu -7 305 1 707 245 185 0 chrX 97882740 97882956 -64716974 - MIR SINE MIR 0 262 7 184 313 0 0 chrX 97883408 97883456 -64716474 + MIR SINE MIR 100 147 -61 3047 161 81 11 chrX 97884339 97884898 -64715032 + L1MB7 LINE L1 5433 6030 -154 1656 173 0 11 chrX 97884898 97885170 -64714760 - AluJo SINE Alu -20 292 24 2313 117 0 0 chrX 97885377 97885685 -64714245 - AluSg SINE Alu -2 308 1 738 260 43 34 chrX 97886456 97886691 -64713239 + MIR SINE MIR 20 256 -6 2288 113 13 0 chrX 97886818 97887127 -64712803 - AluSq SINE Alu 0 313 1 248 343 0 14 chrX 97887601 97887674 -64712256 - MIR3 SINE MIR -131 77 6 932 148 0 0 chrX 97888441 97888569 -64711361 - FLAM_C SINE Alu -5 128 1 199 343 79 7 chrX 97889179 97889319 -64710611 + L2 LINE L2 2525 2674 -640 * 395 346 84 6 chrX 97889300 97889479 -64710451 + L2 LINE L2 3075 3267 -5 357 291 137 63 chrX 97889479 97889750 -64710180 + L2 LINE L2 2681 2971 -343 1185 174 0 5 chrX 97890509 97890727 -64709203 + L1MA7 LINE L1 6074 6290 -1 2265 90 6 16 chrX 97890894 97891205 -64708725 - AluSg SINE Alu -2 308 1 283 173 0 19 chrX 97891469 97891521 -64708409 - L2 LINE L2 0 3313 3263 251 247 0 12 chrX 97892047 97892132 -64707798 + CT-rich Low_complexity Low_complexity 3 86 0 227 259 0 17 chrX 97892319 97892377 -64707553 + GA-rich Low_complexity Low_complexity 5 61 0 339 25 0 0 chrX 97892630 97892670 -64707260 + (TG)n Simple_repeat Simple_repeat 2 41 0 180 77 0 0 chrX 97893444 97893470 -64706460 + (GGGTG)n Simple_repeat Simple_repeat 2 27 0 186 133 0 0 chrX 97894413 97894443 -64705487 + (TG)n Simple_repeat Simple_repeat 2 31 0 636 214 14 7 chrX 97894462 97894607 -64705323 - MER103 DNA DNA -19 147 2 186 128 0 0 chrX 97894667 97894706 -64705224 + (A)n Simple_repeat Simple_repeat 1 39 0 1099 257 66 52 chrX 97895285 97895362 -64704568 - L1ME3A LINE L1 -208 5962 5888 1410 179 58 34 chrX 97895362 97895653 -64704277 - AluJo SINE Alu -11 301 4 1099 257 66 52 chrX 97895653 97896015 -64703915 - L1ME3A LINE L1 -282 5888 5517 414 165 29 58 chrX 97896116 97896219 -64703711 + MIR3 SINE MIR 108 207 -1 318 26 0 0 chrX 97896538 97896577 -64703353 + (T)n Simple_repeat Simple_repeat 1 39 0 560 306 169 5 chrX 97946818 97947037 -64652893 - MIR SINE MIR -2 260 6 397 227 18 57 chrX 97947050 97947187 -64652743 - L1MC/D LINE L1 -462 5780 5651 1001 268 52 8 chrX 97947550 97947800 -64652130 + MIR SINE MIR 2 262 0 517 252 64 30 chrX 97948285 97948519 -64651411 - L1MC4a LINE L1 -1909 5899 5658 2411 134 49 0 chrX 97949025 97949398 -64650532 - MSTC LTR MaLR 0 428 42 213 244 13 77 chrX 97949674 97949752 -64650178 + MIR SINE MIR 114 186 -76 258 221 147 0 chrX 97949839 97949907 -64650023 - MIR SINE MIR -65 143 66 1538 242 120 54 chrX 97950059 97950529 -64649401 + L1ME4a LINE L1 5293 5731 -390 847 248 36 12 chrX 97950529 97950779 -64649151 - MIR SINE MIR -4 258 3 1538 242 120 54 chrX 97950779 97950809 -64649121 + L1ME4a LINE L1 5731 5758 -363 1716 134 24 14 chrX 97950809 97951099 -64648831 + AluJb SINE Alu 1 293 -19 1538 242 120 54 chrX 97951099 97951373 -64648557 + L1ME4a LINE L1 5758 6119 -2 371 308 169 57 chrX 97952073 97952425 -64647505 + L2 LINE L2 2298 2712 -602 2199 70 0 7 chrX 97952425 97952733 -64647197 + AluSq SINE Alu 1 306 0 371 308 169 57 chrX 97952733 97952817 -64647113 + L2 LINE L2 2712 2785 -529 438 329 63 31 chrX 97953207 97953429 -64646501 + L2 LINE L2 2871 3099 -173 204 154 26 0 chrX 97954729 97954768 -64645162 + GA-rich Low_complexity Low_complexity 4 43 0 245 298 40 136 chrX 97958361 97958538 -64641392 + MIR SINE MIR 34 192 -70 460 291 70 26 chrX 97958861 97959098 -64640832 + MIR SINE MIR 3 262 0 220 273 91 11 chrX 97959985 97960073 -64639857 - L3 LINE CR1 -49 1528 1434 639 219 86 41 chrX 97960177 97960446 -64639484 + L1ME4a LINE L1 5835 6115 -6 1123 197 19 89 chrX 97960467 97960792 -64639138 + L1ME3A LINE L1 5793 6094 -76 29 0 0 0 chrX 97960813 97960842 -64639088 + AT_rich Low_complexity Low_complexity 1 29 0 1765 154 0 23 chrX 97961643 97961765 -64638165 + AluJo SINE Alu 1 124 -188 2327 75 0 0 chrX 97961765 97962059 -64637871 - AluY SINE Alu -17 294 1 1765 154 0 23 chrX 97962059 97962235 -64637695 + AluJo SINE Alu 124 292 -20 1698 160 3 38 chrX 97962398 97962717 -64637213 - AluJb SINE Alu -4 308 1 1510 167 7 47 chrX 97963364 97963663 -64636267 + L1MD2 LINE L1 6073 6359 0 227 255 0 0 chrX 97963720 97963767 -64636163 + (CA)n Simple_repeat Simple_repeat 2 48 0 230 229 98 59 chrX 97963978 97964131 -64635799 + MLT1G LTR MaLR 190 348 -242 501 295 19 81 chrX 97965292 97965327 -64634603 + MIR SINE MIR 1 37 -225 1972 77 110 0 chrX 97965327 97965599 -64634331 + AluSq SINE Alu 1 302 -11 501 295 19 81 chrX 97965599 97965773 -64634157 + MIR SINE MIR 37 197 -65 * 1461 255 119 18 chrX 97965768 97966472 -64633458 - L2 LINE L2 -1 3312 2554 293 278 14 0 chrX 97966485 97966557 -64633373 + MIR SINE MIR 186 258 -4 2966 175 8 20 chrX 97967684 97968285 -64631645 + L1MA10 LINE L1 5740 6333 -1 613 285 77 23 chrX 97968534 97968755 -64631175 - L1ME3A LINE L1 -294 5876 5644 355 207 129 43 chrX 97968902 97969018 -64630912 - MER112 DNA MER1_type -134 126 1 565 304 63 10 chrX 97969036 97969243 -64630687 - L1ME3A LINE L1 -535 5627 5410 214 297 153 9 chrX 97971322 97971433 -64628497 - L2 LINE L2 -21 3251 3125 857 143 0 0 chrX 97971658 97971777 -64628153 + FLAM_C SINE Alu 1 119 -14 367 328 9 10 chrX 97971777 97971901 -64628029 - MIR SINE MIR -67 141 19 261 183 0 0 chrX 97972318 97972378 -64627552 + CT-rich Low_complexity Low_complexity 2 61 0 245 241 0 0 chrX 97972778 97972832 -64627098 + GA-rich Low_complexity Low_complexity 1 54 0 2075 183 50 10 chrX 97973539 97973955 -64625975 + MER63B DNA MER1_type 2 434 -2 241 279 13 51 chrX 97974165 97974251 -64625679 - MIR3 SINE MIR -120 88 5 186 43 0 0 chrX 97975168 97975191 -64624739 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chrX 97975675 97975715 -64624215 + AT_rich Low_complexity Low_complexity 1 40 0 1073 93 14 0 chrX 97975723 97975863 -64624067 - AluSg/x SINE Alu -5 305 164 860 137 0 8 chrX 97976182 97976306 -64623624 + FLAM_C SINE Alu 1 123 -20 913 252 0 17 chrX 97978473 97978711 -64621219 + MIR SINE MIR 28 261 -1 2271 98 0 33 chrX 97978735 97979041 -64620889 - AluSx SINE Alu -16 296 1 445 218 179 19 chrX 97979367 97979523 -64620407 - MER5A DNA MER1_type 0 189 9 460 201 0 75 chrX 97979539 97979673 -64620257 + MER5C DNA MER1_type 1 124 -200 221 275 101 0 chrX 97979808 97979877 -64620053 + MER5C DNA MER1_type 249 324 0 219 69 0 0 chrX 97980350 97980379 -64619551 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 829 258 22 9 chrX 97981223 97981452 -64618478 + MIR SINE MIR 31 262 0 237 33 0 0 chrX 97981665 97981695 -64618235 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2321 75 4 0 chrX 97981699 97981980 -64617950 - AluSp SINE Alu -31 282 1 199 277 0 0 chrX 97982518 97982565 -64617365 - L2 LINE L2 -12 3301 3255 237 33 0 0 chrX 97987085 97987115 -64612815 + (CA)n Simple_repeat Simple_repeat 2 31 0 419 162 8 26 chrX 97987115 97987232 -64612698 + (TA)n Simple_repeat Simple_repeat 1 115 0 221 0 0 33 chrX 97987265 97987295 -64612635 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 386 167 17 17 chrX 97987305 97987425 -64612505 + (TA)n Simple_repeat Simple_repeat 2 121 0 942 121 0 0 chrX 97987457 97987589 -64612341 - AluSg/x SINE Alu -5 307 176 827 122 128 10 chrX 97987601 97987797 -64612133 - MER33 DNA MER1_type 0 363 145 * 1877 242 45 23 chrX 97987793 97987831 -64612099 - REP3 LTR ERV -21 541 505 288 0 0 0 chrX 97987831 97987863 -64612067 + (CA)n Simple_repeat Simple_repeat 2 33 0 1877 242 45 23 chrX 97987863 97988353 -64611577 - REP3 LTR ERV -57 505 1 644 154 39 0 chrX 97988353 97988457 -64611473 - MER33 DNA MER1_type -215 109 2 2317 101 0 0 chrX 97989419 97989716 -64610214 + AluSx SINE Alu 1 297 -15 1818 184 40 6 chrX 97989999 97990352 -64609578 + MLT1A1 LTR MaLR 1 365 0 766 165 0 0 chrX 97991004 97991119 -64608811 + FLAM_A SINE Alu 5 119 -14 2319 84 78 29 chrX 97991648 97991995 -64607935 - THE1B LTR MaLR 0 364 1 225 299 124 11 chrX 97992754 97992931 -64606999 + L2 LINE L2 2330 2526 -788 257 378 61 0 chrX 97993083 97993263 -64606667 + L2 LINE L2 2922 3112 -160 3391 154 77 0 chrX 97993434 97993768 -64606162 - MER7C DNA MER2_type -2427 601 205 191 88 29 0 chrX 97993768 97993802 -64606128 + (TGAG)n Simple_repeat Simple_repeat 4 38 0 3391 154 77 0 chrX 97993802 97994025 -64605905 - MER7C DNA MER2_type -2823 205 1 480 291 99 34 chrX 97994456 97994748 -64605182 + L1MC4a LINE L1 5618 5928 -1880 * 2353 157 26 29 chrX 97994510 97994963 -64604967 + L1MB8 LINE L1 5688 6139 -39 1775 139 40 0 chrX 97994983 97995257 -64604673 - AluJb SINE Alu -27 285 1 475 315 20 0 chrX 97995332 97995481 -64604449 + L2 LINE L2 2554 2705 -609 2207 102 0 0 chrX 97995491 97995802 -64604128 + AluY SINE Alu 1 311 0 5676 176 68 32 chrX 97995811 97997465 -64602465 + L1MD2 LINE L1 4669 6359 0 366 219 9 57 chrX 97997671 97997776 -64602154 + L2 LINE L2 3214 3313 0 2461 83 0 0 chrX 97998037 97998337 -64601593 - AluSx SINE Alu -12 300 1 1940 155 14 7 chrX 97998917 97999213 -64600717 - AluJb SINE Alu -14 298 1 2323 108 0 13 chrX 98000500 98000816 -64599114 - AluSx SINE Alu 0 312 1 291 54 0 0 chrX 98001013 98001050 -64598880 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1262 125 108 35 chrX 98001067 98001299 -64598631 - L1MA7 LINE L1 -423 5868 5620 811 105 0 0 chrX 98051299 98051404 -64548526 + AluSg/x SINE Alu 187 291 -19 425 324 139 15 chrX 98051407 98051859 -64548071 + L2 LINE L2 2708 3215 -98 372 137 0 0 chrX 98051860 98051909 -64548021 + MER6B DNA MER2_type 64 112 -164 3007 120 17 37 chrX 98051909 98052023 -64547907 + MER6B DNA MER2_type 1 4294967019 -1142 1877 156 28 0 chrX 98052023 98052311 -64547619 - AluJb SINE Alu -16 296 1 3007 120 17 37 chrX 98052311 98052791 -64547139 + MER6B DNA MER2_type -278 210 0 237 266 203 0 chrX 98052792 98052871 -64547059 + L2 LINE L2 3178 3272 0 1410 121 5 0 chrX 98053174 98053372 -64546558 - AluSg/x SINE Alu -13 299 101 526 242 36 48 chrX 98053407 98053572 -64546358 + MIR SINE MIR 84 246 -16 312 125 0 0 chrX 98054224 98054288 -64545642 + (CAT)n Simple_repeat Simple_repeat 3 66 0 2096 116 0 67 chrX 98054652 98054981 -64544949 + AluSx SINE Alu 1 307 -5 2148 112 24 0 chrX 98054981 98055275 -64544655 + AluSx SINE Alu 1 301 -11 183 167 0 0 chrX 98056933 98056963 -64542967 + MIR SINE MIR 227 256 -6 5742 179 63 37 chrX 98056986 98057144 -64542786 + L1MD2 LINE L1 4515 4668 -1691 2280 81 3 0 chrX 98057144 98057455 -64542475 + AluSx SINE Alu 1 312 0 5742 179 63 37 chrX 98057455 98059118 -64540812 + L1MD2 LINE L1 4668 6359 0 398 219 9 57 chrX 98059324 98059429 -64540501 + L2 LINE L2 3214 3313 0 2441 83 0 0 chrX 98059690 98059990 -64539940 - AluSx SINE Alu -12 300 1 1923 155 14 7 chrX 98060570 98060866 -64539064 - AluJb SINE Alu -14 298 1 2306 108 0 13 chrX 98062153 98062469 -64537461 - AluSx SINE Alu 0 312 1 291 54 0 0 chrX 98062666 98062703 -64537227 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 3483 123 41 39 chrX 98062720 98063018 -64536912 - L1MA8 LINE L1 -423 5868 5572 2412 92 0 7 chrX 98063018 98063324 -64536606 + AluSx SINE Alu 1 304 -8 3483 123 41 39 chrX 98063324 98063670 -64536260 - L1MA8 LINE L1 -719 5572 5224 2486 90 0 0 chrX 98063705 98064015 -64535915 + AluSg SINE Alu 1 310 0 357 278 56 40 chrX 98064236 98064362 -64535568 + L2 LINE L2 3145 3272 0 2338 97 0 3 chrX 98065946 98066246 -64533684 - AluSx SINE Alu -12 300 2 252 326 0 0 chrX 98066365 98066454 -64533476 - MIR SINE MIR -4 258 170 25 0 0 0 chrX 98066506 98066531 -64533399 + AT_rich Low_complexity Low_complexity 1 25 0 569 165 83 0 chrX 98066567 98066688 -64533242 - L1MA7 LINE L1 -5 6286 6156 560 126 0 35 chrX 98066729 98066816 -64533114 - HY4 scRNA scRNA -9 84 1 2438 151 34 11 chrX 98066816 98067254 -64532676 - L1MA8 LINE L1 -251 6040 5593 2041 107 0 31 chrX 98067382 98067693 -64532237 - AluSq SINE Alu 0 302 1 1894 109 68 0 chrX 98067737 98068031 -64531899 + AluSx SINE Alu 1 312 0 183 129 0 0 chrX 98068123 98068154 -64531776 + (TA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chrX 98068501 98068523 -64531407 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chrX 98069168 98069217 -64530713 + GC_rich Low_complexity Low_complexity 1 49 0 2376 72 0 3 chrX 98069389 98069681 -64530249 + AluSc SINE Alu 1 291 -18 2627 42 0 6 chrX 98069760 98070073 -64529857 + AluY SINE Alu 1 311 0 1368 81 12 0 chrX 98070092 98070265 -64529665 + AluSq SINE Alu 132 306 -7 2199 91 7 10 chrX 98071619 98071916 -64528014 + AluSx SINE Alu 1 296 -16 533 165 28 0 chrX 98071917 98072026 -64527904 + GA-rich Low_complexity Low_complexity 5 116 0 197 204 45 0 chrX 98072106 98072150 -64527780 - L2 LINE L2 0 3313 3268 385 246 64 0 chrX 98072639 98072749 -64527181 - MIR SINE MIR -2 260 144 2210 128 17 48 chrX 98072797 98073464 -64526466 + L1MA4 LINE L1 4952 5608 -692 811 121 17 0 chrX 98073464 98073580 -64526350 + FLAM_C SINE Alu 2 119 -24 360 0 0 0 chrX 98073580 98073620 -64526310 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 4403 110 30 39 chrX 98073621 98073817 -64526113 + L1MA4 LINE L1 5596 5792 -508 2138 72 0 129 chrX 98073817 98074166 -64525764 + AluSc SINE Alu 1 304 -5 4403 110 30 39 chrX 98074166 98074680 -64525250 + L1MA4 LINE L1 5792 6299 -1 21 95 0 0 chrX 98074778 98074841 -64525089 + AT_rich Low_complexity Low_complexity 1 63 0 465 270 0 86 chrX 98075006 98075180 -64524750 - MER5B DNA MER1_type -19 159 1 1577 185 14 20 chrX 98075609 98075901 -64524029 + AluJb SINE Alu 1 290 -22 32 43 0 0 chrX 98075990 98076036 -64523894 + AT_rich Low_complexity Low_complexity 1 46 0 223 257 0 71 chrX 98076036 98076106 -64523824 - MIR SINE MIR -150 112 48 3855 166 9 15 chrX 98076170 98076280 -64523650 - L1MB4 LINE L1 -165 6015 5906 2215 126 42 9 chrX 98076280 98076613 -64523317 - MER2 DNA MER2_type 0 344 1 3855 166 9 15 chrX 98076613 98077184 -64522746 - L1MB4 LINE L1 -274 5906 5338 282 114 0 0 chrX 98077186 98077230 -64522700 + L1M LINE L1 5345 5388 -790 533 171 50 69 chrX 98077255 98077466 -64522464 - L1MB4 LINE L1 -826 5340 4251 1020 111 64 58 chrX 98077466 98077637 -64522293 + AluSq SINE Alu 1 172 -141 1208 159 0 0 chrX 98077637 98077844 -64522086 - L1M4 LINE L1 -959 5187 4981 8021 167 21 51 chrX 98077851 98078587 -64521343 - L1 LINE L1 -992 5336 4580 2085 124 10 0 chrX 98078587 98078877 -64521053 - AluSg SINE Alu -17 293 1 8021 167 21 51 chrX 98078877 98078974 -64520956 - L1 LINE L1 -1748 4580 4482 2359 75 7 0 chrX 98078974 98079266 -64520664 - AluY SINE Alu -16 295 2 8021 167 21 51 chrX 98079266 98080063 -64519867 - L1 LINE L1 -1846 4482 3756 2312 92 7 10 chrX 98080063 98080368 -64519562 - AluY SINE Alu -7 304 1 8021 167 21 51 chrX 98080368 98080467 -64519463 - L1 LINE L1 -2572 3756 3656 2184 130 3 0 chrX 98080467 98080775 -64519155 - AluSx SINE Alu -3 309 1 5114 215 59 22 chrX 98080775 98081249 -64518681 - L1 LINE L1 -4250 1078 623 2103 138 3 0 chrX 98081249 98081553 -64518377 - AluSx SINE Alu -7 305 1 5114 215 59 22 chrX 98081553 98082947 -64516983 - L1 LINE L1 -4705 623 14 1017 190 0 80 chrX 98083067 98083179 -64516751 + MER3 DNA MER1_type 2 89 -120 2138 135 0 0 chrX 98083179 98083490 -64516440 + AluSx SINE Alu 1 311 -1 1017 190 0 80 chrX 98083490 98083603 -64516327 + MER3 DNA MER1_type 89 209 0 2145 108 4 0 chrX 98083789 98084087 -64515843 + AluSg SINE Alu 1 299 0 429 272 28 22 chrX 98084087 98084267 -64515663 - L1MB4 LINE L1 -2178 3968 3788 212 51 51 102 chrX 98084290 98084302 -64515628 + A-rich Low_complexity Low_complexity 3 14 -44 3287 121 4 58 chrX 98084302 98084437 -64515493 + L1MA5 LINE L1 5773 5914 -386 2173 106 31 0 chrX 98084437 98084730 -64515200 + AluSq SINE Alu 1 302 -11 3287 121 4 58 chrX 98084730 98085148 -64514782 + L1MA5 LINE L1 5914 6296 -4 212 51 51 102 chrX 98085148 98085194 -64514736 + A-rich Low_complexity Low_complexity 14 58 0 2147 94 7 20 chrX 98085675 98085973 -64513957 + AluSx SINE Alu 1 294 -18 2316 90 7 3 chrX 98087109 98087409 -64512521 + AluSg SINE Alu 1 301 -9 2056 123 0 7 chrX 98087466 98087778 -64512152 - AluSx SINE Alu 0 310 1 2796 179 62 50 chrX 98087793 98088195 -64511735 - L1MC/D LINE L1 -467 5775 5379 2327 97 0 7 chrX 98088195 98088505 -64511425 - AluSg SINE Alu -2 308 1 2796 179 62 50 chrX 98088505 98088830 -64511100 - L1MC/D LINE L1 -863 5379 5059 2443 82 0 0 chrX 98088830 98089123 -64510807 - AluSq SINE Alu -18 295 3 2796 179 62 50 chrX 98089123 98089518 -64510412 - L1MC/D LINE L1 -1183 5059 4670 2407 81 0 0 chrX 98089518 98089814 -64510116 + AluSp SINE Alu 1 296 -17 2204 83 6 42 chrX 98089816 98090163 -64509767 + AluY SINE Alu 1 311 0 2796 179 62 50 chrX 98090163 98090176 -64509754 - L1MC/D LINE L1 -1572 4670 4659 2203 98 14 0 chrX 98090176 98090461 -64509469 - AluSx SINE Alu -22 290 2 2796 179 62 50 chrX 98090461 98090562 -64509368 - L1MC/D LINE L1 -1583 4659 4506 309 295 0 0 chrX 98090562 98090640 -64509290 - L2 LINE L2 -566 2748 2671 1526 196 4 4 chrX 98090644 98090924 -64509006 - AluJo SINE Alu -10 302 23 708 143 0 0 chrX 98090998 98091103 -64508827 + AluY SINE Alu 207 311 0 2356 90 3 0 chrX 98091682 98091981 -64507949 + AluSg SINE Alu 1 300 -10 2412 90 3 0 chrX 98092076 98092375 -64507555 + AluSq SINE Alu 1 300 -13 606 233 15 15 chrX 98092603 98092736 -64507194 + L1M4 LINE L1 2 134 -6408 1294 308 98 33 chrX 98092749 98093483 -64506447 + L1M4 LINE L1 3 784 -5758 235 254 0 0 chrX 98093506 98093561 -64506369 + T-rich Low_complexity Low_complexity 1 55 0 8221 148 26 47 chrX 98093566 98094426 -64505504 - L1MA3 LINE L1 -11 6294 5417 2149 106 3 3 chrX 98094426 98094901 -64505029 - AluSx SINE Alu 0 312 1 8221 148 26 47 chrX 98094901 98095785 -64504145 - L1MA3 LINE L1 -888 5417 4516 2267 121 0 3 chrX 98095785 98096091 -64503839 - AluSq SINE Alu -8 305 1 8221 148 26 47 chrX 98096091 98096192 -64503738 - L1MA3 LINE L1 -1789 4516 4414 546 55 11 132 chrX 98096192 98096241 -64503689 - MADE1 DNA Mariner 0 80 45 2245 105 14 0 chrX 98096241 98096537 -64503393 + AluSx SINE Alu 1 300 -12 546 55 11 132 chrX 98096537 98096578 -64503352 - MADE1 DNA Mariner -35 45 1 8221 148 26 47 chrX 98096578 98097156 -64502774 - L1MA3 LINE L1 -1891 4414 3825 1175 153 0 0 chrX 98097156 98097333 -64502597 - AluSg/x SINE Alu -2 308 132 2389 58 41 0 chrX 98097333 98097624 -64502306 - AluY SINE Alu -4 307 5 8221 148 26 47 chrX 98097624 98098963 -64500967 - L1MA3 LINE L1 -2478 3827 2544 445 192 0 0 chrX 98098965 98099043 -64500887 + AluJ/FRAM SINE Alu 232 309 -3 2528 120 22 18 chrX 98099043 98099444 -64500486 + L1MA4A LINE L1 5777 6179 -124 2275 104 0 3 chrX 98099445 98099754 -64500176 + AluSg SINE Alu 2 309 -1 740 258 64 34 chrX 98099764 98100059 -64499871 + L1ME4a LINE L1 5522 5825 -296 2342 79 0 7 chrX 98100065 98100405 -64499525 + AluSg SINE Alu 1 338 0 524 330 62 22 chrX 98100416 98100640 -64499290 + MIR SINE MIR 1 233 -29 2456 80 0 0 chrX 98100668 98100967 -64498963 + AluSq SINE Alu 5 303 -10 562 287 104 0 chrX 98100978 98101142 -64498788 - MIR SINE MIR -81 181 1 539 267 34 11 chrX 98101182 98101358 -64498572 + L1ME4a LINE L1 5839 6018 -103 188 225 25 0 chrX 98101360 98101400 -64498530 + MIR SINE MIR 206 246 -16 1718 273 134 35 chrX 98101473 98101525 -64498405 - L1MEd LINE L1 -4862 1257 1212 2291 87 0 19 chrX 98101525 98101837 -64498093 - AluSg SINE Alu -4 306 1 1718 273 134 35 chrX 98101837 98102126 -64497804 - L1MEd LINE L1 -4907 1212 953 1129 144 10 59 chrX 98102126 98102202 -64497728 + L1PB4 LINE L1 5962 6040 -116 2335 90 0 3 chrX 98102202 98102501 -64497429 + AluSq SINE Alu 1 298 -15 1129 144 10 59 chrX 98102501 98102626 -64497304 + L1PB4 LINE L1 6040 6153 -3 1718 273 134 35 chrX 98102626 98103204 -64496726 - L1MEd LINE L1 -5166 953 246 751 155 0 0 chrX 98103208 98103311 -64496619 + U6 snRNA snRNA 1 103 -4 15462 190 22 23 chrX 98103340 98103840 -64496090 + L1PB1 LINE L1 6 505 -6362 2353 74 0 0 chrX 98103840 98104156 -64495774 + AluSx SINE Alu 1 316 0 15462 190 22 23 chrX 98104156 98105283 -64494647 + L1PB1 LINE L1 505 1631 -5236 2438 87 0 3 chrX 98105283 98105595 -64494335 + AluY SINE Alu 1 311 0 15462 190 22 23 chrX 98105595 98105619 -64494311 + L1PB1 LINE L1 1631 1654 -5213 2429 74 3 0 chrX 98105619 98105915 -64494015 + AluSp SINE Alu 3 299 -14 15462 190 22 23 chrX 98105915 98106539 -64493391 + L1PB1 LINE L1 1654 2277 -4590 2343 92 3 0 chrX 98106539 98106834 -64493096 - AluSp SINE Alu -17 296 1 15462 190 22 23 chrX 98106834 98107049 -64492881 + L1PB1 LINE L1 2277 2491 -4376 2257 103 16 7 chrX 98107049 98107359 -64492571 + AluSq SINE Alu 1 313 0 15462 190 22 23 chrX 98107359 98107644 -64492286 + L1PB1 LINE L1 2491 2775 -4092 2361 94 0 0 chrX 98107644 98107942 -64491988 - AluSg SINE Alu -12 298 1 15462 190 22 23 chrX 98107942 98109134 -64490796 + L1PB1 LINE L1 2775 3966 -2901 2335 80 0 10 chrX 98109134 98109433 -64490497 + AluSq SINE Alu 1 296 -17 2320 82 3 25 chrX 98109434 98109749 -64490181 + AluSg SINE Alu 1 308 -2 15462 190 22 23 chrX 98109749 98110016 -64489914 + L1PB1 LINE L1 3966 4232 -2635 2181 100 10 3 chrX 98110016 98110317 -64489613 + AluSp SINE Alu 1 303 -10 15462 190 22 23 chrX 98110317 98112670 -64487260 + L1PB1 LINE L1 4232 6865 -2 855 169 27 43 chrX 98112776 98112960 -64486970 - L1MEd LINE L1 -5932 187 7 201 278 133 11 chrX 98113282 98113372 -64486558 - L2 LINE L2 -468 2846 2746 2374 79 0 10 chrX 98113549 98113854 -64486076 - AluY SINE Alu -8 303 2 245 328 103 9 chrX 98114168 98114284 -64485646 + L2 LINE L2 2731 2857 -457 2036 106 7 7 chrX 98114364 98114669 -64485261 - AluSx SINE Alu 0 305 1 1950 133 6 25 chrX 98114679 98114996 -64484934 - AluSx SINE Alu -1 311 1 945 109 0 0 chrX 98115304 98115441 -64484489 + AluSg/x SINE Alu 172 308 -4 546 212 0 26 chrX 98115461 98115574 -64484356 + FLAM_C SINE Alu 1 110 -33 209 210 16 0 chrX 98115848 98115910 -64484020 + CT-rich Low_complexity Low_complexity 2 64 0 2619 34 0 0 chrX 98116139 98116432 -64483498 + AluY SINE Alu 1 293 -18 2233 103 0 3 chrX 98116536 98116836 -64483094 + AluSg SINE Alu 1 299 -11 1146 116 15 135 chrX 98117032 98117182 -64482748 + MER96B DNA MER1_type? 190 298 -119 2418 74 0 7 chrX 98117182 98117491 -64482439 + AluY SINE Alu 1 307 -4 1146 116 15 135 chrX 98117491 98117599 -64482331 + MER96B DNA MER1_type? 298 417 0 1994 99 0 0 chrX 98117785 98118037 -64481893 + AluSx SINE Alu 45 296 -16 1262 105 0 0 chrX 98118091 98118253 -64481677 + AluSg/x SINE Alu 133 294 -18 247 194 29 7 chrX 98118253 98118392 -64481538 + (TA)n Simple_repeat Simple_repeat 1 142 0 1343 83 0 0 chrX 98119011 98119179 -64480751 + AluSp SINE Alu 137 304 -9 21 57 0 0 chrX 98119367 98119402 -64480528 + AT_rich Low_complexity Low_complexity 1 35 0 311 242 142 17 chrX 98119562 98119682 -64480248 - L1MC4a LINE L1 -1844 5964 5830 673 24 0 0 chrX 98119686 98119768 -64480162 + MLT2A1 LTR ERVL 1 82 -362 351 132 0 0 chrX 98119847 98119900 -64480030 + Alu SINE Alu 243 295 -7 2234 89 25 0 chrX 98120660 98120941 -64478989 + AluSc SINE Alu 5 292 -17 28 48 0 0 chrX 98120942 98120984 -64478946 + AT_rich Low_complexity Low_complexity 1 42 0 2002 148 7 3 chrX 98121032 98121329 -64478601 - AluJb SINE Alu -14 298 1 1117 229 62 108 chrX 98121485 98121667 -64478263 + L2 LINE L2 2681 2870 -443 2116 98 56 3 chrX 98121667 98121954 -64477976 - AluSx SINE Alu -10 302 1 1117 229 62 108 chrX 98121954 98122125 -64477805 + L2 LINE L2 2870 3047 -266 2166 91 0 14 chrX 98122125 98122434 -64477496 - AluY SINE Alu 0 306 2 1117 229 62 108 chrX 98122434 98122724 -64477206 + L2 LINE L2 3047 3298 -15 2554 63 0 0 chrX 98122758 98123057 -64476873 + AluSg SINE Alu 1 299 -11 572 228 55 8 chrX 98124645 98124772 -64475158 - MIR SINE MIR -72 190 58 2030 99 51 3 chrX 98125066 98125359 -64474571 - AluSx SINE Alu -4 308 2 207 0 0 0 chrX 98128206 98128229 -64471701 + (T)n Simple_repeat Simple_repeat 1 23 0 2263 104 20 0 chrX 98128254 98128551 -64471379 - AluSx SINE Alu -9 303 1 424 260 50 72 chrX 98128689 98128809 -64471121 + MER5B DNA MER1_type 1 117 -61 2156 121 0 0 chrX 98128809 98129098 -64470832 - AluSg SINE Alu -21 289 1 424 260 50 72 chrX 98129098 98129158 -64470772 + MER5B DNA MER1_type 117 177 -1 2530 60 0 0 chrX 98129686 98129986 -64469944 + AluY SINE Alu 1 300 -11 2208 124 0 13 chrX 98130287 98130421 -64469509 + AluSx SINE Alu 1 135 -177 2343 103 0 0 chrX 98130421 98130721 -64469209 + AluSx SINE Alu 1 300 -12 2208 124 0 13 chrX 98130721 98130900 -64469030 + AluSx SINE Alu 135 310 -2 271 328 67 25 chrX 98131332 98131451 -64468479 + L2 LINE L2 3149 3272 0 215 333 71 32 chrX 98131449 98131575 -64468355 + L2 LINE L2 3178 3308 -5 * 220 263 0 18 chrX 98132036 98132093 -64467837 + CT-rich Low_complexity Low_complexity 4 59 0 2188 97 7 0 chrX 98132801 98133120 -64466810 + AluSx SINE Alu 1 321 0 569 247 193 40 chrX 98133209 98133505 -64466425 - MER102b DNA MER1_type 0 341 1 239 327 18 18 chrX 98135754 98135867 -64464063 + L2 LINE L2 3197 3309 -4 2512 79 0 0 chrX 98136660 98136964 -64462966 + AluSx SINE Alu 1 304 -8 501 204 19 0 chrX 98137684 98137841 -64462089 + (TA)n Simple_repeat Simple_repeat 1 160 0 446 300 6 50 chrX 98138712 98138762 -64461168 + MER5B DNA MER1_type 1 52 -126 1859 127 7 18 chrX 98138762 98139045 -64460885 + AluSx SINE Alu 27 306 -6 446 300 6 50 chrX 98139045 98139174 -64460756 + MER5B DNA MER1_type 52 172 -6 197 227 0 0 chrX 98139215 98139259 -64460671 + MIR SINE MIR 111 154 -108 2113 93 66 3 chrX 98139437 98139726 -64460204 + AluSg SINE Alu 1 307 -3 400 300 122 33 chrX 98140112 98140292 -64459638 - MER91A DNA MER1_type 0 196 1 2251 76 45 0 chrX 98141243 98141533 -64458397 + AluSg SINE Alu 1 303 -7 614 219 0 0 chrX 98141692 98141858 -64458072 - FLAM_A SINE Alu 0 167 2 2235 131 0 0 chrX 98141931 98142244 -64457686 + AluSq SINE Alu 1 313 0 701 213 27 77 chrX 98142477 98142552 -64457378 + MER97a DNA MER1_type? 6 83 -811 2178 108 0 14 chrX 98142552 98142848 -64457082 - AluSg SINE Alu -18 292 1 701 213 27 77 chrX 98142848 98142955 -64456975 + MER97a DNA MER1_type? 83 179 -715 2071 118 51 0 chrX 98143809 98144105 -64455825 + AluSx SINE Alu 1 311 -1 456 134 317 14 chrX 98144105 98144247 -64455683 - L1ME3 LINE L1 -8 6154 5970 2307 120 0 0 chrX 98144766 98145075 -64454855 + AluSx SINE Alu 1 309 -3 2276 85 3 0 chrX 98145159 98145491 -64454439 + AluSq SINE Alu 1 333 0 239 306 72 9 chrX 98145687 98145798 -64454132 - L2 LINE L2 -6 3266 3149 874 234 89 0 chrX 98145824 98146038 -64453892 + MIR SINE MIR 6 238 -24 893 222 42 34 chrX 98146237 98146476 -64453454 + MIR SINE MIR 22 262 0 296 277 0 0 chrX 98146493 98146576 -64453354 + MIR SINE MIR 168 250 -12 466 231 24 88 chrX 98147052 98147263 -64452667 - MIR SINE MIR -46 216 20 339 229 17 34 chrX 98147580 98147759 -64452171 + CT-rich Low_complexity Low_complexity 3 178 0 205 329 49 37 chrX 98148488 98148570 -64451360 - L2 LINE L2 -35 3237 3155 24 0 0 0 chrX 98148595 98148619 -64451311 + AT_rich Low_complexity Low_complexity 1 24 0 363 339 53 44 chrX 98149712 98150072 -64449858 + L1ME4a LINE L1 4877 5239 -907 1274 279 61 75 chrX 98150098 98150258 -64449672 + L1ME4a LINE L1 5267 5428 -693 2409 52 7 3 chrX 98150258 98150545 -64449385 - AluSg SINE Alu -18 292 5 1274 279 61 75 chrX 98150545 98150606 -64449324 + L1ME4a LINE L1 5428 5488 -633 2211 95 7 0 chrX 98150606 98150916 -64449014 + AluSx SINE Alu 1 312 0 1274 279 61 75 chrX 98150916 98151550 -64448380 + L1ME4a LINE L1 5488 6118 -3 2313 95 0 10 chrX 98151574 98151879 -64448051 + AluSx SINE Alu 11 312 0 2412 80 6 6 chrX 98154151 98154464 -64445466 + AluSq SINE Alu 1 313 0 2388 103 0 0 chrX 98155888 98156188 -64443742 - AluSx SINE Alu -12 300 1 342 45 0 0 chrX 98156325 98156369 -64443561 + (CA)n Simple_repeat Simple_repeat 2 45 0 2190 78 65 3 chrX 98156698 98156991 -64442939 + AluSq SINE Alu 3 313 0 256 179 410 0 chrX 98157260 98157355 -64442575 - MIR SINE MIR -50 212 79 1967 155 0 3 chrX 98157922 98158212 -64441718 - AluJb SINE Alu -23 289 1 2032 102 40 16 chrX 98158535 98158838 -64441092 + AluSp SINE Alu 1 310 -3 458 249 60 34 chrX 98158838 98159071 -64440859 - L1ME3 LINE L1 -233 5929 5691 2426 89 0 13 chrX 98159552 98159866 -64440064 + AluSg SINE Alu 1 310 0 878 195 0 0 chrX 98160116 98160296 -64439634 - AluSg/x SINE Alu 0 315 136 381 93 18 0 chrX 98160296 98160359 -64439571 - Alu SINE Alu -259 49 1 693 172 0 9 chrX 98160688 98160833 -64439097 + FLAM_A SINE Alu 1 144 0 324 225 275 0 chrX 98160833 98161011 -64438919 - L1ME4a LINE L1 -26 6095 5869 261 57 0 0 chrX 98161012 98161047 -64438883 + (TATG)n Simple_repeat Simple_repeat 2 36 0 325 259 46 52 chrX 98161111 98161285 -64438645 - L1ME4a LINE L1 -451 5670 5498 2438 63 3 38 chrX 98162124 98162441 -64437489 + AluSp SINE Alu 5 310 -3 447 171 11 0 chrX 98162798 98162886 -64437044 - MIR SINE MIR -21 241 153 226 269 45 0 chrX 98162893 98162960 -64436970 + GA-rich Low_complexity Low_complexity 5 74 0 252 330 0 10 chrX 98163041 98163138 -64436792 + GA-rich Low_complexity Low_complexity 3 98 0 1016 113 13 0 chrX 98164971 98164995 -64434935 - L1PA8A LINE L1 0 6131 6109 189 74 0 0 chrX 98164995 98165022 -64434908 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1016 113 13 0 chrX 98165022 98165148 -64434782 - L1PA8A LINE L1 -22 6109 5979 2134 135 0 0 chrX 98165152 98165456 -64434474 - AluJb SINE Alu -8 304 1 2515 65 0 0 chrX 98165675 98165968 -64433962 - AluY SINE Alu -16 295 3 1194 318 50 23 chrX 98166166 98166766 -64433164 + L3 LINE CR1 525 1140 -437 1416 124 66 27 chrX 98166807 98167064 -64432866 + L1MA9 LINE L1 6024 6290 -22 909 231 23 31 chrX 98167518 98167778 -64432152 + MIR SINE MIR 4 261 -1 674 269 33 14 chrX 98167797 98168009 -64431921 + MIR SINE MIR 2 217 -45 303 257 29 0 chrX 98168272 98168342 -64431588 + L2 LINE L2 3237 3308 -5 3586 86 62 20 chrX 98170461 98170645 -64429285 + L1MA1 LINE L1 5600 5775 -527 2250 88 29 10 chrX 98170645 98170951 -64428979 + AluSx SINE Alu 1 312 0 3586 86 62 20 chrX 98170951 98171326 -64428604 + L1MA1 LINE L1 5775 6183 -119 2383 132 146 2 chrX 98171331 98171810 -64428120 + L1MC3 LINE L1 7208 7755 -30 2102 109 36 10 chrX 98171852 98172156 -64427774 + AluSq SINE Alu 1 312 -1 691 99 36 18 chrX 98172242 98172353 -64427577 - AluJb SINE Alu -177 135 23 377 83 48 0 chrX 98172511 98172595 -64427335 + (TA)n Simple_repeat Simple_repeat 1 88 0 2179 97 13 20 chrX 98172595 98172893 -64427037 - AluSg SINE Alu -14 296 1 1278 201 56 7 chrX 98174116 98174400 -64425530 - AluJo SINE Alu -14 298 1 2081 117 7 3 chrX 98174479 98174777 -64425153 - AluSg SINE Alu -11 299 1 2058 140 0 3 chrX 98174965 98175258 -64424672 - AluSx SINE Alu -20 292 1 2130 109 14 0 chrX 98175258 98175541 -64424389 - AluSx SINE Alu -14 298 11 2291 77 18 0 chrX 98177089 98177375 -64422555 + AluSx SINE Alu 1 291 -21 905 265 93 51 chrX 98177459 98178294 -64421636 - L2 LINE L2 -4 3309 2449 243 271 0 0 chrX 98178294 98178353 -64421577 - L2 LINE L2 -717 2597 2539 2036 141 3 0 chrX 98178629 98178940 -64420990 - AluSx SINE Alu 0 312 1 1328 164 191 54 chrX 98179927 98180287 -64419643 + MER31B LTR ERV1 1 425 -41 2393 72 7 3 chrX 98180287 98180577 -64419353 + AluSg SINE Alu 1 291 -19 1328 164 191 54 chrX 98180577 98180624 -64419306 + MER31B LTR ERV1 425 464 -2 2573 70 0 0 chrX 98180822 98181124 -64418806 + AluY SINE Alu 1 302 -9 2404 100 0 3 chrX 98181222 98181533 -64418397 - AluSq SINE Alu -3 310 1 345 267 177 48 chrX 98182033 98182347 -64417583 + L1M4 LINE L1 4255 4609 -1537 2227 120 7 0 chrX 98182363 98182672 -64417258 - AluSx SINE Alu -1 311 1 2426 88 7 0 chrX 98182760 98183067 -64416863 + AluSp SINE Alu 1 309 -4 2142 107 10 0 chrX 98183443 98183732 -64416198 + AluSx SINE Alu 1 292 -20 2263 63 30 27 chrX 98183736 98184037 -64415893 + AluY SINE Alu 1 302 -9 248 250 83 24 chrX 98184039 98184123 -64415807 - MIR SINE MIR -159 103 15 426 219 65 50 chrX 98184137 98184338 -64415592 + L1ME4a LINE L1 5911 6114 -7 180 307 67 0 chrX 98184689 98184764 -64415166 - MIR SINE MIR -35 227 148 400 77 0 0 chrX 98185144 98185196 -64414734 + MER66B LTR ERV1 295 346 -140 391 130 26 0 chrX 98185213 98185290 -64414640 + GA-rich Low_complexity Low_complexity 2 80 0 230 191 0 0 chrX 98187061 98187103 -64412827 + L2 LINE L2 3223 3264 -8 235 193 119 18 chrX 98187276 98187385 -64412545 - L1ME4a LINE L1 0 6121 6002 616 234 193 27 chrX 98187521 98187855 -64412075 - L1MC4a LINE L1 -137 5984 5591 244 190 89 38 chrX 98187892 98187971 -64411959 - L1ME LINE L1 -242 5879 5797 250 240 250 0 chrX 98188010 98188106 -64411824 - L1ME LINE L1 -434 5687 5568 196 329 13 0 chrX 98188458 98188537 -64411393 + L2 LINE L2 2626 2705 -609 2396 71 19 16 chrX 98189209 98189519 -64410411 - AluSq SINE Alu -2 311 1 703 284 92 12 chrX 98192015 98192342 -64407588 - L1ME LINE L1 -385 5736 5384 707 213 163 0 chrX 98192651 98192811 -64407119 - MER5A DNA MER1_type 0 189 4 322 151 34 223 chrX 98193885 98194036 -64405894 + MER5A DNA MER1_type 1 104 -85 1950 128 10 10 chrX 98194036 98194326 -64405604 - AluJo SINE Alu -9 303 14 322 151 34 223 chrX 98194326 98194380 -64405550 + MER5A DNA MER1_type 104 167 -22 1895 115 71 166 chrX 98194839 98195333 -64404597 - MER83 LTR ERV1 -1 447 1 188 189 0 0 chrX 98195693 98195730 -64404200 - MIR SINE MIR -118 144 108 218 268 0 0 chrX 98196597 98196653 -64403277 + L2 LINE L2 3205 3260 -12 776 202 16 16 chrX 98197100 98197283 -64402647 + L1MB7 LINE L1 5993 6175 -9 1661 163 173 18 chrX 98197395 98197782 -64402148 + MER31B LTR ERV1 1 447 -19 2314 96 10 3 chrX 98197885 98198187 -64401743 + AluSg SINE Alu 1 304 -6 338 328 66 19 chrX 98198201 98198460 -64401470 - L2 LINE L2 -40 3273 3003 394 359 35 41 chrX 98198596 98198720 -64401210 - L2 LINE L2 -494 2820 2697 2481 79 0 16 chrX 98198720 98199038 -64400892 + AluSp SINE Alu 1 313 0 394 359 35 41 chrX 98199038 98199258 -64400672 - L2 LINE L2 -617 2697 2478 1020 146 353 248 chrX 98199288 98199634 -64400296 - MLT1A1 LTR MaLR -4 361 53 3173 148 44 86 chrX 98199634 98199796 -64400134 - LTR8 LTR ERV1 0 691 524 2360 74 0 3 chrX 98199796 98200121 -64399809 - AluSx SINE Alu 0 324 1 3173 148 44 86 chrX 98200121 98200678 -64399252 - LTR8 LTR ERV1 -167 524 1 1020 146 353 248 chrX 98200678 98200727 -64399203 - MLT1A1 LTR MaLR -312 53 52 2211 102 0 0 chrX 98200727 98201010 -64398920 - AluSx SINE Alu -25 287 5 1020 146 353 248 chrX 98201010 98201068 -64398862 - MLT1A1 LTR MaLR -313 52 1 * 4137 180 58 50 chrX 98201068 98201148 -64398782 + MER21B LTR ERV1 26 104 -759 2347 95 3 0 chrX 98201148 98201452 -64398478 + AluSq SINE Alu 9 313 0 4137 180 58 50 chrX 98201452 98201657 -64398273 + MER21B LTR ERV1 104 306 -557 2280 113 3 0 chrX 98201657 98201967 -64397963 - AluSp SINE Alu -2 311 1 4137 180 58 50 chrX 98201967 98202500 -64397430 + MER21B LTR ERV1 306 852 -11 1516 299 38 66 chrX 98202519 98203198 -64396732 - L2 LINE L2 -832 2482 1785 2500 76 0 3 chrX 98203198 98203499 -64396431 - AluSq SINE Alu -13 300 1 1516 299 38 66 chrX 98203499 98203624 -64396306 - L2 LINE L2 -1529 1785 1658 1926 162 0 7 chrX 98203624 98203927 -64396003 - AluJo SINE Alu -11 301 1 1516 299 38 66 chrX 98203927 98204424 -64395506 - L2 LINE L2 -1656 1658 1217 699 238 56 61 chrX 98204421 98204652 -64395278 - MIR SINE MIR -26 236 7 * 2013 239 40 16 chrX 98205015 98205038 -64394892 + L1ME2 LINE L1 5594 5615 -549 2987 104 19 53 chrX 98205038 98205189 -64394741 - MSTB2 LTR MaLR 0 457 302 2228 112 0 10 chrX 98205189 98205485 -64394445 - AluSx SINE Alu -19 293 1 2987 104 19 53 chrX 98205485 98205806 -64394124 - MSTB2 LTR MaLR -155 302 1 2013 239 40 16 chrX 98205806 98206339 -64393591 + L1ME2 LINE L1 5615 6163 -1 1895 132 61 7 chrX 98206668 98206964 -64392966 - AluJb SINE Alu 0 312 1 547 246 22 49 chrX 98206998 98207137 -64392793 + MIR SINE MIR 35 169 -93 2450 92 0 0 chrX 98207137 98207440 -64392490 - AluSq SINE Alu -10 303 1 547 246 22 49 chrX 98207440 98207483 -64392447 + MIR SINE MIR 169 212 -50 279 254 0 0 chrX 98208536 98208599 -64391331 - L2 LINE L2 -1 3312 3250 2494 75 0 0 chrX 98209352 98209647 -64390283 - AluY SINE Alu -16 295 1 2193 108 3 0 chrX 98210185 98210472 -64389458 + AluSg SINE Alu 1 288 -22 372 164 0 0 chrX 98210476 98210543 -64389387 + (TA)n Simple_repeat Simple_repeat 1 67 0 267 229 0 62 chrX 98210546 98210642 -64389288 + L1MC4 LINE L1 6614 6703 -1339 225 260 14 0 chrX 98210618 98210691 -64389239 + L1MCa LINE L1 1995 2068 -4358 * 278 237 11 0 chrX 98210715 98210808 -64389122 - L1MCa LINE L1 -1340 6982 2007 230 263 0 0 chrX 98210780 98210856 -64389074 + L1MC3 LINE L1 6571 6646 -1139 * 240 250 28 0 chrX 98210856 98210928 -64389002 + L1MC3 LINE L1 6573 6646 -1139 * 241 318 23 0 chrX 98210880 98210968 -64388962 - L1MC4 LINE L1 -1339 6703 6614 203 242 30 0 chrX 98210968 98211034 -64388896 + (CATA)n Simple_repeat Simple_repeat 4 71 0 * 690 229 0 0 chrX 98211020 98211199 -64388731 + (TA)n Simple_repeat Simple_repeat 2 180 0 253 283 0 0 chrX 98211199 98211259 -64388671 + (CATA)n Simple_repeat Simple_repeat 1 60 0 399 196 32 122 chrX 98211300 98211489 -64388441 + MIR SINE MIR 91 262 0 1860 162 3 3 chrX 98211752 98212048 -64387882 - AluSx SINE Alu -14 298 3 2108 105 24 3 chrX 98212056 98212350 -64387580 - AluSg SINE Alu -10 300 1 44733 39 1 8 chrX 98212408 98216087 -64383843 - L1PA4 LINE L1 0 6155 2562 2259 81 0 24 chrX 98216087 98216382 -64383548 + AluY SINE Alu 1 288 -23 44733 39 1 8 chrX 98216382 98218927 -64381003 - L1PA4 LINE L1 -3593 2562 1 509 249 53 49 chrX 98218931 98219176 -64380754 - MIR SINE MIR -7 255 10 231 204 0 0 chrX 98219360 98219414 -64380516 + (CA)n Simple_repeat Simple_repeat 2 55 0 651 216 6 62 chrX 98219612 98219788 -64380142 + MER5A DNA MER1_type 2 167 -22 1229 172 10 159 chrX 98220595 98220655 -64379275 + MLT1A1 LTR MaLR 1 68 -297 2471 82 3 0 chrX 98220655 98220959 -64378971 + AluY SINE Alu 1 305 -6 1229 172 10 159 chrX 98220959 98221300 -64378630 + MLT1A1 LTR MaLR 68 342 -23 271 192 0 0 chrX 98222014 98222066 -64377864 + MLT1A1 LTR MaLR 314 365 0 * 1643 196 123 45 chrX 98222056 98222479 -64377451 + MER31B LTR ERV1 2 457 -9 1330 133 9 21 chrX 98222489 98222722 -64377208 - L1MA9 LINE L1 -6 6306 6077 2278 202 94 28 chrX 98224311 98224478 -64375452 - MLT1F1 LTR MaLR -2 565 410 2296 105 0 0 chrX 98224478 98224772 -64375158 + AluSg SINE Alu 1 294 -16 2278 202 94 28 chrX 98224772 98225134 -64374796 - MLT1F1 LTR MaLR -157 410 1 313 247 0 26 chrX 98225163 98225240 -64374690 - L2 LINE L2 -4 3268 3194 6324 84 5 15 chrX 98225501 98226383 -64373547 - L1MA2 LINE L1 0 6304 5432 2292 109 0 10 chrX 98226385 98226698 -64373232 - AluSg SINE Alu 0 310 1 2074 120 30 0 chrX 98226707 98227008 -64372922 - AluSx SINE Alu 0 312 3 14892 144 83 7 chrX 98227021 98229464 -64370466 - L1M1 LINE L1 -4925 2640 11 2958 165 31 20 chrX 98229628 98230199 -64369731 - LTR24B LTR ERV1 -7 569 1 2241 138 0 0 chrX 98230348 98230660 -64369270 - AluSx SINE Alu 0 312 1 207 0 0 0 chrX 98230672 98230695 -64369235 + (TTA)n Simple_repeat Simple_repeat 2 24 0 458 294 31 19 chrX 98230761 98230921 -64369009 - MIR SINE MIR -55 207 46 438 281 170 7 chrX 98231184 98231337 -64368593 - MER5A DNA MER1_type -3 186 9 241 320 43 121 chrX 98231805 98231963 -64367967 - L2 LINE L2 -86 3186 3017 1070 207 9 63 chrX 98231963 98232071 -64367859 + MER63A DNA MER1_type 1 92 -1596 2482 60 0 35 chrX 98232071 98232390 -64367540 - AluY SINE Alu -3 308 1 1070 207 9 63 chrX 98232390 98232503 -64367427 + MER63A DNA MER1_type 92 210 0 241 320 43 121 chrX 98232503 98232529 -64367401 - L2 LINE L2 -255 3017 2991 1717 184 44 44 chrX 98232529 98232894 -64367036 - MLT1A1 LTR MaLR 0 365 1 241 320 43 121 chrX 98232894 98233030 -64366900 - L2 LINE L2 -281 2991 2890 5518 127 20 11 chrX 98233463 98234353 -64365577 - L1PA16 LINE L1 -3 6163 5266 317 221 63 21 chrX 98234378 98234473 -64365457 - L1MC5 LINE L1 -54 7907 7809 1706 176 89 145 chrX 98234501 98234748 -64365182 - L1MC5 LINE L1 -271 7690 7431 808 209 0 0 chrX 98234748 98234877 -64365053 - FLAM_A SINE Alu -4 129 1 1706 176 89 145 chrX 98234877 98235257 -64364673 - L1MC5 LINE L1 -530 7431 7031 2048 104 28 0 chrX 98235257 98235544 -64364386 + AluSx SINE Alu 6 300 -12 1706 176 89 145 chrX 98235544 98235559 -64364371 - L1MC5 LINE L1 -930 7031 7017 2182 104 3 0 chrX 98235559 98235846 -64364084 - AluSx SINE Alu -24 288 1 1706 176 89 145 chrX 98235846 98236132 -64363798 - L1MC5 LINE L1 -944 7017 6812 2003 95 0 0 chrX 98236339 98236591 -64363339 - AluSq SINE Alu -61 252 1 191 59 0 29 chrX 98236670 98236704 -64363226 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 991 184 56 0 chrX 98237698 98237877 -64362053 - MER5A DNA MER1_type 0 189 1 24 85 0 0 chrX 98238427 98238486 -64361444 + AT_rich Low_complexity Low_complexity 1 59 0 394 214 11 34 chrX 98238620 98238709 -64361221 + MLT1E LTR MaLR 1 87 -506 4187 136 34 14 chrX 98238882 98239579 -64360351 - L1MB3 LINE L1 -23 6160 5450 32 95 0 0 chrX 98239579 98239674 -64360256 + AT_rich Low_complexity Low_complexity 1 95 0 2374 96 3 0 chrX 98240165 98240468 -64359462 + AluSc SINE Alu 1 304 -5 271 274 48 0 chrX 98241304 98241388 -64358542 - MIR SINE MIR -72 190 103 1719 147 0 34 chrX 98241549 98241862 -64358068 - AluSx SINE Alu 0 303 1 2122 101 0 11 chrX 98241895 98242204 -64357726 + AluSq SINE Alu 1 306 0 267 189 54 14 chrX 98242207 98242281 -64357649 - L1ME4a LINE L1 -28 6093 6017 1426 261 50 43 chrX 98242787 98243681 -64356249 + L1ME1 LINE L1 2040 2886 -3329 985 249 21 18 chrX 98243684 98244010 -64355920 + L1ME1 LINE L1 5084 5410 -805 3355 195 64 6 chrX 98244014 98244687 -64355243 + L1ME1 LINE L1 5519 6230 -5 290 333 75 0 chrX 98244742 98244835 -64355095 + MER91A DNA MER1_type 96 195 -1 23 68 0 0 chrX 98244856 98244900 -64355030 + AT_rich Low_complexity Low_complexity 1 44 0 2067 133 0 3 chrX 98244962 98245255 -64354675 - AluSx SINE Alu -20 292 1 367 223 25 95 chrX 98245429 98245646 -64354284 - L1MC4 LINE L1 -777 7184 7029 621 268 105 42 chrX 98245939 98246084 -64353846 + L1ME4a LINE L1 4886 5020 -1201 2124 123 10 7 chrX 98246084 98246394 -64353536 - AluJb SINE Alu -1 311 1 621 268 105 42 chrX 98246394 98246406 -64353524 + L1ME4a LINE L1 5020 5030 -1191 1727 81 0 0 chrX 98246406 98246644 -64353286 - AluY SINE Alu 0 311 74 621 268 105 42 chrX 98246644 98247045 -64352885 + L1ME4a LINE L1 5030 5478 -743 * 726 299 51 12 chrX 98247038 98247369 -64352561 + L1ME4a LINE L1 5688 6031 -90 3548 221 56 35 chrX 98247372 98247530 -64352400 - L1ME2 LINE L1 -9 6155 6002 2716 146 90 14 chrX 98247530 98247974 -64351956 + MER66A LTR ERV1 1 478 0 3548 221 56 35 chrX 98247974 98248109 -64351821 - L1ME2 LINE L1 -162 6002 5871 2013 140 0 29 chrX 98248109 98248423 -64351507 - AluSx SINE Alu -7 305 1 3548 221 56 35 chrX 98248423 98249260 -64350670 - L1ME2 LINE L1 -293 5871 5008 28180 42 39 3 chrX 98249349 98252833 -64347097 + L1P LINE L1 604 4214 -1932 1770 153 7 23 chrX 98252833 98253133 -64346797 + AluJb SINE Alu 3 297 -15 28180 42 39 3 chrX 98253133 98253159 -64346771 + L1P LINE L1 4214 4238 -1908 306 301 79 39 chrX 98253199 98253428 -64346502 + L1MDa LINE L1 2366 2603 -3937 454 301 91 30 chrX 98253452 98253857 -64346073 + L1MDa LINE L1 2670 3099 -3441 656 300 81 26 chrX 98253969 98254134 -64345796 - L2 LINE L2 0 3313 3126 630 80 11 0 chrX 98254134 98254222 -64345708 + L1MA1 LINE L1 6214 6302 0 656 300 81 26 chrX 98254222 98254329 -64345601 - L2 LINE L2 -187 3126 3026 1491 266 94 71 chrX 98254333 98254962 -64344968 + L1MDa LINE L1 3192 3805 -2735 2271 106 30 0 chrX 98254962 98255265 -64344665 + AluSx SINE Alu 1 312 0 1491 266 94 71 chrX 98255265 98256175 -64343755 + L1MDa LINE L1 3805 4767 -1773 249 167 0 0 chrX 98256746 98256794 -64343136 - L1MC4 LINE L1 -1337 6705 6658 337 279 0 0 chrX 98256872 98256976 -64342954 + HAL1b LINE L1 1245 1348 0 470 280 76 80 chrX 98257031 98257109 -64342821 + L1MDa LINE L1 4776 4853 -1687 459 0 0 0 chrX 98257109 98257160 -64342770 + (CA)n Simple_repeat Simple_repeat 1 51 0 470 280 76 80 chrX 98257160 98257289 -64342641 + L1MDa LINE L1 4853 4981 -1559 2206 122 0 0 chrX 98257289 98257585 -64342345 - AluSx SINE Alu -16 296 1 470 280 76 80 chrX 98257585 98257928 -64342002 + L1MDa LINE L1 4981 5327 -1213 477 0 0 0 chrX 98257928 98257981 -64341949 + (CA)n Simple_repeat Simple_repeat 2 54 0 470 280 76 80 chrX 98257981 98257992 -64341938 + L1MDa LINE L1 5327 5337 -1203 1977 129 7 0 chrX 98258102 98258382 -64341548 + AluJo SINE Alu 13 294 -18 330 278 103 52 chrX 98258391 98258644 -64341286 + L1MDa LINE L1 5567 5806 -709 2011 142 0 10 chrX 98258644 98258946 -64340984 + AluJb SINE Alu 2 300 -12 330 278 103 52 chrX 98258946 98258990 -64340940 + L1MDa LINE L1 5806 5846 -669 2259 159 28 6 chrX 98258990 98259348 -64340582 + MER47A DNA MER2_type 1 366 0 330 278 103 52 chrX 98259348 98259755 -64340175 + L1MDa LINE L1 5846 6325 -190 2198 110 0 0 chrX 98259755 98260045 -64339885 + AluSx SINE Alu 1 290 -22 330 278 103 52 chrX 98260045 98260112 -64339818 + L1MDa LINE L1 6325 6387 -128 1286 209 21 38 chrX 98260192 98260503 -64339427 - AluJo SINE Alu 0 306 1 962 249 54 53 chrX 98260625 98260694 -64339236 - L1MC/D LINE L1 -748 5398 5331 2262 109 7 0 chrX 98260694 98260997 -64338933 - AluSg SINE Alu -5 305 1 962 249 54 53 chrX 98260997 98261480 -64338450 - L1MC/D LINE L1 -815 5331 5243 35 24 0 0 chrX 98264132 98264174 -64335756 + AT_rich Low_complexity Low_complexity 1 42 0 1671 184 4 0 chrX 98264453 98264782 -64335148 + AluJo SINE Alu 5 334 0 380 339 0 18 chrX 98269778 98269946 -64329984 + (CTGGGG)n Simple_repeat Simple_repeat 1 165 0 237 353 0 17 chrX 98270218 98270391 -64329539 + (CTGGGG)n Simple_repeat Simple_repeat 3 172 0 948 70 0 0 chrX 98271814 98271943 -64327987 + (CTGGGG)n Simple_repeat Simple_repeat 2 130 0 657 299 81 19 chrX 98274560 98274913 -64325017 + L1ME4a LINE L1 5498 5897 -224 2470 73 0 6 chrX 98275029 98275342 -64324588 - AluSx SINE Alu -1 311 1 412 226 85 9 chrX 98275439 98275545 -64324385 - MER115 DNA AcHobo 0 693 580 336 194 132 14 chrX 98275530 98275674 -64324256 - Zaphod DNA AcHobo -3232 799 639 * 1015 193 49 8 chrX 98275693 98276036 -64323894 + LTR16A LTR ERVL 21 450 0 11301 199 43 10 chrX 98276036 98279046 -64320884 + HERV16 LTR ERVL 1 3096 -1900 739 194 39 17 chrX 98279117 98279297 -64320633 - MER66B LTR ERV1 -10 476 293 231 36 0 0 chrX 98279337 98279365 -64320565 + (CAG)n Simple_repeat Simple_repeat 2 29 0 660 184 269 57 chrX 98279408 98279690 -64320240 - MER41B LTR ERV1 -148 487 146 582 333 31 11 chrX 98279797 98280041 -64319889 + HERV16 LTR ERVL 3200 3455 -2030 1755 172 13 7 chrX 98280041 98280343 -64319587 - AluJb SINE Alu -8 304 1 582 333 31 11 chrX 98280343 98280449 -64319481 + HERV16 LTR ERVL 3455 3557 -1928 230 175 0 0 chrX 98280483 98280523 -64319407 - Zaphod DNA AcHobo -3895 136 97 208 147 0 0 chrX 98280523 98280557 -64319373 + (T)n Simple_repeat Simple_repeat 1 34 0 7488 27 0 0 chrX 98280599 98282219 -64317711 - L1PA4 LINE L1 -3 6152 4525 180 0 0 0 chrX 98282237 98282257 -64317673 + (TG)n Simple_repeat Simple_repeat 1 20 0 361 283 19 69 chrX 98282746 98282813 -64317117 - L2 LINE L2 -927 2387 2318 1207 224 108 33 chrX 98282813 98283238 -64316692 + MSTB2 LTR MaLR 1 457 0 361 283 19 69 chrX 98283238 98283329 -64316601 - L2 LINE L2 -996 2318 2237 1567 112 79 36 chrX 98283522 98283641 -64316289 - L1MB3 LINE L1 -7 6176 6064 2271 108 0 3 chrX 98283641 98283946 -64315984 - AluSq SINE Alu -9 304 1 1567 112 79 36 chrX 98283946 98284129 -64315801 - L1MB3 LINE L1 -119 6064 5861 1464 190 61 50 chrX 98284133 98284320 -64315610 - MLT1A2 LTR MaLR -4 370 176 231 36 0 0 chrX 98284320 98284348 -64315582 + (GA)n Simple_repeat Simple_repeat 1 28 0 1464 190 61 50 chrX 98284348 98284523 -64315407 - MLT1A2 LTR MaLR -198 176 4 726 189 94 42 chrX 98284733 98284998 -64314932 - HAL1 LINE L1 -125 2382 2104 748 268 101 0 chrX 98285014 98285212 -64314718 + MIR SINE MIR 19 236 -26 1200 261 39 0 chrX 98285266 98285603 -64314327 - HAL1 LINE L1 -608 1899 1550 2287 232 56 45 chrX 98285605 98285655 -64314275 - HAL1 LINE L1 -1 2506 2458 1631 136 31 128 chrX 98285655 98286037 -64313893 + MER7A DNA MER2_type 1 343 -3 2287 232 56 45 chrX 98286037 98286057 -64313873 - HAL1 LINE L1 -49 2458 2440 1604 204 33 41 chrX 98286057 98286450 -64313480 - MLT1B LTR MaLR 0 390 1 2287 232 56 45 chrX 98286450 98287250 -64312680 - HAL1 LINE L1 -67 2440 1625 742 145 32 8 chrX 98287374 98287498 -64312432 - AluJb SINE Alu -179 133 7 744 214 67 0 chrX 98287590 98287768 -64312162 - HAL1 LINE L1 -865 1642 1453 232 250 14 54 chrX 98287870 98288018 -64311912 - L1MC4a LINE L1 -1785 6023 5882 560 239 53 5 chrX 98288050 98288238 -64311692 - L1MC4a LINE L1 -1922 5886 5690 * 1038 251 124 13 chrX 98288222 98288600 -64311330 - HAL1 LINE L1 -2045 462 43 560 236 96 93 chrX 98288645 98289320 -64310610 - HAL1 LINE L1 -943 1564 888 598 193 83 0 chrX 98289443 98289552 -64310378 - FRAM SINE Alu -17 159 42 758 264 85 87 chrX 98289554 98289903 -64310027 - HAL1 LINE L1 -1810 697 348 2127 110 38 0 chrX 98289903 98290195 -64309735 + AluSx SINE Alu 1 303 -9 758 264 85 87 chrX 98290195 98290270 -64309660 - HAL1 LINE L1 -2159 348 274 265 222 44 0 chrX 98290539 98290629 -64309301 - L1MC4 LINE L1 -1335 6707 6614 229 250 23 0 chrX 98290585 98290673 -64309257 + L1MC4 LINE L1 6614 6703 -1339 * 266 0 29 0 chrX 98290675 98290709 -64309221 + (GA)n Simple_repeat Simple_repeat 2 36 0 1989 192 44 0 chrX 98290714 98291100 -64308830 - MLT2C2 LTR ERVL -61 403 1 5211 202 26 90 chrX 98291112 98292618 -64307312 - HERVL-C2 LTR ERVL -22 5632 4224 993 210 7 37 chrX 98292637 98293089 -64306841 - ERVL LTR ERVL -5061 703 191 860 148 6 22 chrX 98293109 98293291 -64306639 + CT-rich Low_complexity Low_complexity 1 179 0 308 136 0 0 chrX 98293291 98293335 -64306595 + (TC)n Simple_repeat Simple_repeat 1 44 0 1829 174 7 10 chrX 98293335 98293645 -64306285 - AluSx SINE Alu -3 309 1 2910 115 30 2 chrX 98294386 98294820 -64305110 + MER83 LTR ERV1 3 448 0 1078 179 22 0 chrX 98295142 98295326 -64304604 - AluJb SINE Alu -8 304 117 284 207 0 16 chrX 98295326 98295401 -64304529 - AluJ/monomer SINE Alu -249 52 1 447 265 103 31 chrX 98295652 98295973 -64303957 + HAL1 LINE L1 1270 1613 -894 440 290 65 46 chrX 98296265 98296599 -64303331 + L1MDa LINE L1 2416 2753 -3787 32 26 0 0 chrX 98296657 98296696 -64303234 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chrX 98296748 98296779 -64303151 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 98296854 98296875 -64303055 + AT_rich Low_complexity Low_complexity 1 21 0 5183 125 11 8 chrX 98297026 98297890 -64302040 - L1MB1 LINE L1 -66 6913 6047 6194 231 80 16 chrX 98297892 98298733 -64301197 - L1MB1 LINE L1 -1748 5209 4424 2199 123 0 13 chrX 98298733 98299035 -64300895 - AluSq SINE Alu -15 298 1 6194 231 80 16 chrX 98299035 98300649 -64299281 - L1MB1 LINE L1 -2533 4424 2584 260 213 0 100 chrX 98301046 98301126 -64298804 + L1M4b LINE L1 1154 1225 -5634 763 202 10 40 chrX 98301360 98301558 -64298372 + L1M4b LINE L1 1205 1396 -5463 850 296 30 11 chrX 98301701 98301971 -64297959 - L1MB1 LINE L1 -6040 819 545 535 230 42 0 chrX 98301967 98302132 -64297798 + L1ME4a LINE L1 1972 2143 -4814 * 37805 72 8 9 chrX 98302148 98308300 -64291630 + L1PA6 LINE L1 11 6154 0 1299 244 61 5 chrX 98308323 98308732 -64291198 + L1ME4a LINE L1 2178 2609 -4529 1685 148 192 35 chrX 98308736 98309168 -64290762 - MLT1D LTR MaLR -5 500 1 2015 315 70 19 chrX 98309464 98310443 -64289487 + ERVL LTR ERVL 4180 5207 -557 1272 275 59 21 chrX 98310827 98311300 -64288630 + LTR33 LTR ERVL 27 517 -4 470 283 81 31 chrX 98311539 98311924 -64288006 + L1ME4a LINE L1 4842 5245 -1712 316 222 0 0 chrX 98311939 98312002 -64287928 - L2 LINE L2 0 3313 3251 454 355 33 25 chrX 98312021 98312387 -64287543 + L1ME4a LINE L1 5290 5658 -1299 245 337 24 12 chrX 98313112 98313195 -64286735 + MER5A DNA MER1_type 106 189 0 22 0 0 0 chrX 98313618 98313640 -64286290 + AT_rich Low_complexity Low_complexity 1 22 0 1997 125 34 10 chrX 98314399 98314696 -64285234 - AluSx SINE Alu -8 304 1 6206 43 1 0 chrX 98317458 98318662 -64281268 + L1PA5 LINE L1 4837 6041 -113 762 22 0 0 chrX 98318663 98318755 -64281175 + L1PA3 LINE L1 1 92 -6054 35781 34 23 1 chrX 98318755 98324171 -64275759 + L1PA3 LINE L1 617 6155 0 1096 30 0 0 chrX 98324171 98324302 -64275628 + L1PA5 LINE L1 6023 6154 0 260 291 74 20 chrX 98324412 98324560 -64275370 + L1ME4a LINE L1 6073 6228 -2391 204 226 0 0 chrX 98324584 98324637 -64275293 + (TA)n Simple_repeat Simple_repeat 1 53 0 469 284 142 36 chrX 98324638 98324998 -64274932 + L1ME4a LINE L1 6379 6775 -157 393 22 0 0 chrX 98325317 98325363 -64274567 + (TG)n Simple_repeat Simple_repeat 1 46 0 198 283 0 33 chrX 98325391 98325451 -64274479 + L2 LINE L2 3164 3221 -51 370 301 15 29 chrX 98325592 98325866 -64274064 + L1ME LINE L1 4010 4276 -1870 2063 125 0 0 chrX 98326329 98326610 -64273320 - AluSx SINE Alu -3 309 29 691 130 0 35 chrX 98327593 98327708 -64272222 - FRAM SINE Alu -22 154 44 218 204 0 20 chrX 98329134 98329183 -64270747 + G-rich Low_complexity Low_complexity 1 48 0 704 266 156 3 chrX 98333417 98333706 -64266224 + L1ME LINE L1 5492 5824 -297 1915 87 0 8 chrX 98333767 98334031 -64265899 - L1MA2 LINE L1 0 6304 6043 934 91 39 13 chrX 98334031 98334042 -64265888 - L1MA3 LINE L1 -237 6068 6059 7009 71 10 0 chrX 98334042 98334964 -64264966 - L1PA8A LINE L1 -2 6129 5207 934 91 39 13 chrX 98334964 98335106 -64264824 - L1MA3 LINE L1 -246 6059 5911 402 260 33 13 chrX 98335263 98335413 -64264517 + L1ME4a LINE L1 5773 5925 -196 422 175 73 95 chrX 98336280 98336379 -64263551 + MER104 DNA Tc2 7 104 -1794 2394 73 0 17 chrX 98336379 98336720 -64263210 - AluSq SINE Alu 0 313 1 422 175 73 95 chrX 98336720 98336757 -64263173 + MER104 DNA Tc2 104 140 -40 1957 95 0 0 chrX 98336757 98337028 -64262902 + AluSx SINE Alu 44 314 0 21 57 0 0 chrX 98337545 98337580 -64262350 + AT_rich Low_complexity Low_complexity 1 35 0 466 298 53 18 chrX 98337778 98337949 -64261981 - MIR SINE MIR -22 240 64 207 329 26 0 chrX 98338379 98338455 -64261475 + CT-rich Low_complexity Low_complexity 2 79 0 1977 141 0 7 chrX 98339069 98339368 -64260562 + AluJb SINE Alu 1 297 -15 3177 164 28 116 chrX 98339733 98340199 -64259731 - LTR8 LTR ERV1 0 691 316 1939 137 3 0 chrX 98340199 98340484 -64259446 - AluSx SINE Alu -26 286 1 3177 164 28 116 chrX 98340484 98340775 -64259155 - LTR8 LTR ERV1 -375 316 1 940 216 204 16 chrX 98342983 98343233 -64256697 + AluYa8 SINE Alu 1 297 -3 23 33 0 0 chrX 98343323 98343353 -64256577 + AT_rich Low_complexity Low_complexity 1 30 0 2420 233 55 30 chrX 98343461 98343985 -64255945 - L1M4 LINE L1 -991 5155 4602 360 43 0 0 chrX 98343985 98344031 -64255899 + (CA)n Simple_repeat Simple_repeat 2 47 0 2420 233 55 30 chrX 98344031 98344325 -64255605 - L1M4 LINE L1 -1544 4602 4317 23101 114 13 80 chrX 98344355 98348582 -64251348 + L1P LINE L1 12 3954 -2192 2038 91 55 0 chrX 98348582 98348855 -64251075 + L1PA7 LINE L1 5851 6139 -15 298 204 23 0 chrX 98348855 98348943 -64250987 + (TA)n Simple_repeat Simple_repeat 1 90 0 768 155 0 54 chrX 98348962 98349091 -64250839 + FLAM_C SINE Alu 2 123 -20 1796 274 40 16 chrX 98349101 98349744 -64250186 - L1M4 LINE L1 -1804 4342 3684 380 275 0 78 chrX 98349729 98349896 -64250034 - L1M4 LINE L1 -1946 4200 4047 * 1375 119 11 88 chrX 98349934 98350035 -64249895 + MLT2D LTR ERVL 1 108 -306 2112 123 10 7 chrX 98350035 98350337 -64249593 - AluSx SINE Alu -9 303 1 1375 119 11 88 chrX 98350337 98350496 -64249434 + MLT2D LTR ERVL 108 241 -173 2229 155 28 0 chrX 98350502 98350890 -64249040 - L1 LINE L1 -1984 5122 4724 1491 270 65 20 chrX 98350862 98351413 -64248517 - L1 LINE L1 -4632 2405 1830 * 2502 231 150 47 chrX 98351424 98352422 -64247508 - L1 LINE L1 -5865 1165 65 213 39 0 0 chrX 98352553 98352579 -64247351 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2344 94 3 3 chrX 98352683 98352992 -64246938 + AluSg SINE Alu 2 310 0 12028 202 19 22 chrX 98353046 98354935 -64244995 - L1PA16 LINE L1 -4 6162 4270 4912 33 0 0 chrX 98354935 98355481 -64244449 - L1PA4 LINE L1 -2 6153 5608 12028 202 19 22 chrX 98355481 98357431 -64242499 - L1PA16 LINE L1 -1896 4270 2344 439 284 37 16 chrX 98357525 98357715 -64242215 - L1MEd LINE L1 -4655 1655 1462 45260 38 1 1 chrX 98357829 98363986 -64235944 - L1PA3 LINE L1 0 6155 1 629 271 92 75 chrX 98364031 98364789 -64235141 - L1MEd LINE L1 -4785 1344 569 1742 104 27 4 chrX 98365197 98365457 -64234473 - L1PA13 LINE L1 0 7601 7336 21952 177 27 17 chrX 98365458 98365927 -64234003 - L1PA13 LINE L1 -380 7221 6758 198 0 0 0 chrX 98365927 98365949 -64233981 + (TTG)n Simple_repeat Simple_repeat 3 24 0 21952 177 27 17 chrX 98365949 98369980 -64229950 - L1PA13 LINE L1 -843 6758 2769 1968 133 13 3 chrX 98369980 98370280 -64229650 - AluSq SINE Alu -10 303 1 2179 133 3 0 chrX 98370281 98370582 -64229348 - AluSx SINE Alu -10 302 1 21952 177 27 17 chrX 98370582 98372435 -64227495 - L1PA13 LINE L1 -4831 2770 5 1774 201 159 7 chrX 98372476 98372929 -64227001 - L1ME3A LINE L1 -4 6166 5645 450 0 0 0 chrX 98379779 98379829 -64220101 + (TG)n Simple_repeat Simple_repeat 2 51 0 223 171 24 0 chrX 98380226 98380267 -64219663 + CT-rich Low_complexity Low_complexity 3 44 0 300 83 0 0 chrX 98380382 98380430 -64219500 + (TG)n Simple_repeat Simple_repeat 2 49 0 264 314 0 0 chrX 98380493 98380579 -64219351 - L1M4 LINE L1 -1513 4633 4548 2165 103 0 0 chrX 98382142 98382449 -64217481 - AluSx SINE Alu 0 307 1 225 163 0 0 chrX 98382627 98382676 -64217254 + (CA)n Simple_repeat Simple_repeat 2 50 0 297 241 35 85 chrX 98382737 98382878 -64217052 - L1MC/D LINE L1 -1994 5814 5681 548 303 16 31 chrX 98382972 98383292 -64216638 - HAL1b LINE L1 -415 933 619 312 295 135 0 chrX 98384272 98384428 -64215502 + L2 LINE L2 3114 3290 -23 560 288 128 45 chrX 98384657 98385015 -64214915 + L2 LINE L2 2140 2527 -787 21 0 0 0 chrX 98385023 98385044 -64214886 + AT_rich Low_complexity Low_complexity 1 21 0 986 165 203 0 chrX 98385195 98385377 -64214553 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chrX 98385508 98385529 -64214401 + AT_rich Low_complexity Low_complexity 1 21 0 249 273 189 30 chrX 98385529 98385661 -64214269 - L2 LINE L2 -2 3311 3159 289 220 0 0 chrX 98385909 98385968 -64213962 + HAL1 LINE L1 2093 2151 -356 870 228 101 69 chrX 98386692 98386893 -64213037 - MLT1H LTR MaLR -3 546 353 757 229 5 0 chrX 98386893 98387081 -64212849 + MER53 DNA DNA 1 189 0 870 228 101 69 chrX 98387081 98387349 -64212581 - MLT1H LTR MaLR -196 353 21 839 310 81 57 chrX 98387485 98388014 -64211916 - HAL1 LINE L1 -614 1893 1352 290 287 51 36 chrX 98388276 98388408 -64211522 - L1ME3A LINE L1 -209 5961 5824 2190 114 3 3 chrX 98388408 98388716 -64211214 - AluSp SINE Alu -5 308 1 290 287 51 36 chrX 98388716 98388778 -64211152 - L1ME3A LINE L1 -346 5824 5764 275 321 108 5 chrX 98388818 98389030 -64210900 + L1M4 LINE L1 4063 4296 -1850 450 0 0 0 chrX 98389561 98389611 -64210319 + (CA)n Simple_repeat Simple_repeat 2 51 0 257 222 0 0 chrX 98394262 98394325 -64205605 + CT-rich Low_complexity Low_complexity 2 64 0 273 246 0 15 chrX 98398397 98398462 -64201468 - LTR67 LTR ERVL 0 557 494 231 290 0 14 chrX 98399808 98399877 -64200053 - LTR67 LTR ERVL -4 553 486 183 129 0 0 chrX 98403050 98403081 -64196849 + (CTAGGG)n Simple_repeat Simple_repeat 4 34 0 182 37 37 0 chrX 98404279 98404306 -64195624 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 451 282 32 13 chrX 98404863 98405019 -64194911 + L1ME LINE L1 5647 5805 -316 320 197 120 34 chrX 98405397 98405514 -64194416 + MIR SINE MIR 122 248 -14 296 333 41 55 chrX 98405938 98406229 -64193701 - L2 LINE L2 -901 2413 2127 234 224 13 40 chrX 98406593 98406669 -64193261 + CT-rich Low_complexity Low_complexity 2 75 0 4456 140 29 54 chrX 98408133 98408612 -64191318 - L1MA7 LINE L1 -3 6288 5838 742 170 0 71 chrX 98408612 98408753 -64191177 - FLAM_A SINE Alu -2 131 1 4456 140 29 54 chrX 98408753 98409130 -64190800 - L1MA7 LINE L1 -453 5838 5453 1579 74 5 0 chrX 98409181 98409383 -64190547 + L1MA1 LINE L1 6099 6301 -1 257 294 105 44 chrX 98409941 98410370 -64189560 - L1MEd LINE L1 -1800 4329 3875 1982 109 4 11 chrX 98410374 98410649 -64189281 - AluSp SINE Alu -3 310 38 985 156 7 0 chrX 98410753 98410907 -64189023 + AluJb SINE Alu 156 310 -2 466 302 119 42 chrX 98411025 98411409 -64188521 - L1MEd LINE L1 -2389 3740 3387 209 57 29 0 chrX 98411409 98411444 -64188486 + (TAA)n Simple_repeat Simple_repeat 2 37 0 466 302 119 42 chrX 98411444 98411597 -64188333 - L1MEd LINE L1 -2742 3387 3247 1639 80 14 0 chrX 98411597 98411810 -64188120 - L1PA7 LINE L1 -5 6149 5934 966 37 0 0 chrX 98411810 98411917 -64188013 - U6 snRNA snRNA 0 107 1 466 302 119 42 chrX 98411917 98412846 -64187084 - L1MEd LINE L1 -2881 3248 2159 554 289 70 4 chrX 98413214 98413442 -64186488 + MIR SINE MIR 10 252 -10 263 342 82 23 chrX 98413473 98413947 -64185983 - HAL1 LINE L1 -845 1662 1161 2436 84 0 3 chrX 98414490 98414798 -64185132 - AluSq SINE Alu -2 311 5 591 274 36 32 chrX 98415430 98415682 -64184248 - L1MEd LINE L1 -4896 1223 971 440 323 156 32 chrX 98415782 98416218 -64183712 - L1MEd LINE L1 -5629 490 1 397 310 100 65 chrX 98416787 98417077 -64182853 + L2 LINE L2 3014 3313 0 2055 147 0 6 chrX 98418183 98418497 -64181433 - AluSx SINE Alu 0 312 1 2153 106 7 7 chrX 98418604 98418897 -64181033 - AluSx SINE Alu -19 293 1 896 241 98 74 chrX 98419272 98419691 -64180239 + MLT1J2 LTR MaLR 1 429 -21 793 312 36 52 chrX 98419894 98420572 -64179358 - L1ME2 LINE L1 -170 6063 5398 1519 165 3 84 chrX 98420572 98420909 -64179021 - AluJo SINE Alu 0 312 1 793 312 36 52 chrX 98420909 98421355 -64178575 - L1ME2 LINE L1 -835 5398 4946 286 292 45 11 chrX 98421491 98421580 -64178350 + MLT1J1 LTR MaLR 71 162 -284 536 214 112 73 chrX 98421618 98421796 -64178134 + MLT1J2 LTR MaLR 266 450 0 949 274 106 70 chrX 98421915 98422673 -64177257 - L1ME2 LINE L1 -2295 3920 3190 1221 180 23 19 chrX 98422673 98422929 -64177001 - L1MB8 LINE L1 -1 6177 5921 949 274 106 70 chrX 98422929 98422976 -64176954 - L1ME2 LINE L1 -3025 3190 3146 1210 124 21 36 chrX 98422976 98423169 -64176761 + L1PA8A LINE L1 5942 6131 0 949 274 106 70 chrX 98423169 98423328 -64176602 - L1ME2 LINE L1 -3069 3146 2921 297 79 0 0 chrX 98423336 98423374 -64176556 + AluJb SINE Alu 9 46 -256 404 105 18 0 chrX 98423374 98423431 -64176499 - Alu SINE Alu -259 59 2 240 179 36 0 chrX 98423515 98423571 -64176359 - L1MD1 LINE L1 -10 6232 6175 1488 157 8 4 chrX 98423572 98423834 -64176096 + AluJb SINE Alu 50 312 0 15712 35 1 2 chrX 98423839 98426412 -64173518 + L1PA2 LINE L1 3560 6130 -25 1819 47 0 25 chrX 98426518 98426753 -64173177 + L1PA5 LINE L1 5921 6149 -5 404 287 38 97 chrX 98426789 98427162 -64172768 - L1ME2 LINE L1 -3320 2895 2552 1970 128 3 10 chrX 98427162 98427450 -64172480 - AluSx SINE Alu -26 286 1 404 287 38 97 chrX 98427450 98427529 -64172401 - L1ME2 LINE L1 -3663 2552 2470 712 218 7 7 chrX 98427538 98427685 -64172245 - L1MD2 LINE L1 -18 6341 6195 724 206 69 17 chrX 98427710 98427885 -64172045 - L1MD2 LINE L1 -261 6098 5915 * 4943 133 29 24 chrX 98427874 98428811 -64171119 + L1MA4A LINE L1 5267 6208 -95 1181 150 82 13 chrX 98428916 98429149 -64170781 + L1MA4 LINE L1 6052 6300 0 1066 148 6 6 chrX 98429147 98429329 -64170601 - L1MD2 LINE L1 -424 5935 5754 452 264 7 7 chrX 98429328 98429472 -64170458 - L1ME2 LINE L1 -3762 2453 2310 * 428 291 132 22 chrX 98429514 98429741 -64170189 - L1ME2 LINE L1 -4122 2274 2023 3257 198 42 10 chrX 98431535 98432252 -64167678 - Charlie1a DNA MER1_type -711 744 5 1038 122 30 10 chrX 98432435 98432632 -64167298 - L1MA8 LINE L1 -5 6286 6086 225 327 91 0 chrX 98433079 98433189 -64166741 + L2 LINE L2 2571 2690 -624 242 258 203 33 chrX 98433309 98433491 -64166439 + L2 LINE L2 2838 3050 -222 24 0 0 0 chrX 98433570 98433594 -64166336 + AT_rich Low_complexity Low_complexity 1 24 0 183 184 0 0 chrX 98435814 98435852 -64164078 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 1382 307 52 14 chrX 98440947 98441571 -64158359 + L2 LINE L2 2632 3296 -17 192 77 0 0 chrX 98441573 98441599 -64158331 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1389 217 20 86 chrX 98444089 98444578 -64155352 - LTR16A1 LTR ERVL 0 457 1 192 77 0 0 chrX 98445640 98445666 -64154264 + (TTG)n Simple_repeat Simple_repeat 2 27 0 347 237 219 9 chrX 98447138 98447252 -64152678 - MIR SINE MIR -123 139 2 323 327 123 50 chrX 98447453 98447836 -64152094 + L2 LINE L2 2125 2479 -835 1898 194 11 11 chrX 98447836 98448201 -64151729 + MLT1A1 LTR MaLR 1 365 0 323 327 123 50 chrX 98448201 98448597 -64151333 + L2 LINE L2 2479 2961 -353 252 0 0 0 chrX 98448782 98448810 -64151120 + (TG)n Simple_repeat Simple_repeat 1 28 0 313 244 45 51 chrX 98449789 98449965 -64149965 + Charlie7 DNA MER1_type 2438 2612 0 2844 195 31 27 chrX 98451028 98451741 -64148189 - L1MB7 LINE L1 -5 6179 5464 1140 228 61 26 chrX 98451743 98452168 -64147762 - L1MB7 LINE L1 -982 5164 4725 211 264 115 23 chrX 98452378 98452465 -64147465 + L2 LINE L2 3178 3272 0 1910 298 111 22 chrX 98452499 98453362 -64146568 + L2 LINE L2 415 1354 -1960 309 360 48 36 chrX 98453603 98453853 -64146077 + L1MEd LINE L1 58 310 -5809 722 248 33 0 chrX 98454045 98454287 -64145643 + L1MEd LINE L1 2318 2567 -3562 1058 263 28 50 chrX 98454540 98454936 -64144994 - L2 LINE L2 -4 3309 2923 911 297 31 20 chrX 98455021 98455414 -64144516 + LTR16A1 LTR ERVL 73 457 0 237 308 83 0 chrX 98455649 98455782 -64144148 - L1ME4a LINE L1 -28 6093 5950 23 33 0 0 chrX 98455834 98455864 -64144066 + AT_rich Low_complexity Low_complexity 1 30 0 5852 140 10 10 chrX 98456605 98457767 -64142163 + L1MA7 LINE L1 5132 6290 -1 2945 128 4 0 chrX 98457872 98458325 -64141605 + L1PA16 LINE L1 5703 6157 -9 21 0 0 0 chrX 98458453 98458474 -64141456 + AT_rich Low_complexity Low_complexity 1 21 0 530 261 107 20 chrX 98458494 98458935 -64140995 - L1ME4a LINE L1 -89 6032 5554 1350 136 5 0 chrX 98459025 98459239 -64140691 + L1PA16 LINE L1 5707 5921 -245 302 163 133 44 chrX 98459314 98459427 -64140503 - L1P LINE L1 -738 5413 5291 2566 44 0 0 chrX 98459624 98459920 -64140010 + AluY SINE Alu 1 296 -15 2059 154 7 0 chrX 98460059 98460365 -64139565 + AluSx SINE Alu 1 308 -4 566 274 84 46 chrX 98462807 98463044 -64136886 - MIR SINE MIR -5 257 12 2406 219 42 26 chrX 98463342 98464062 -64135868 - L1M4 LINE L1 -1892 4254 3524 719 306 5 5 chrX 98465512 98465721 -64134209 + MIR SINE MIR 53 261 -1 486 113 31 0 chrX 98469042 98469139 -64130791 + (TA)n Simple_repeat Simple_repeat 1 100 0 284 0 28 0 chrX 98469143 98469179 -64130751 + (GA)n Simple_repeat Simple_repeat 1 37 0 1751 150 4 4 chrX 98469179 98469453 -64130477 - AluJb SINE Alu -38 274 1 24 0 0 0 chrX 98469685 98469709 -64130221 + AT_rich Low_complexity Low_complexity 1 24 0 649 155 10 0 chrX 98469801 98469904 -64130026 + U6 snRNA snRNA 1 104 -3 456 114 13 0 chrX 98470426 98470505 -64129425 + MER53 DNA DNA 5 84 -105 442 112 56 11 chrX 98470438 98470527 -64129403 - MER53 DNA DNA -7 182 90 * 323 288 142 26 chrX 98470951 98471346 -64128584 + L1 LINE L1 3725 4162 -1984 242 315 154 23 chrX 98474069 98474199 -64125731 - MIR SINE MIR -111 151 5 3957 67 0 10 chrX 98474632 98475152 -64124778 - L1PA7 LINE L1 -3 6151 5637 567 0 0 0 chrX 98481772 98481835 -64118095 + (TA)n Simple_repeat Simple_repeat 1 63 0 6340 56 2 0 chrX 98481835 98482740 -64117190 - L1PA7 LINE L1 -118 6036 5130 2681 56 11 6 chrX 98482736 98483095 -64116835 + L1P LINE L1 4625 4985 -1161 * 973 178 20 0 chrX 98483127 98483329 -64116601 + L1MA4 LINE L1 2958 3163 -2983 746 184 38 0 chrX 98483304 98483462 -64116468 + L1MA4 LINE L1 4465 4628 -1518 * 1866 149 58 9 chrX 98483458 98483800 -64116130 + L1MA4 LINE L1 5662 6020 -280 360 163 35 12 chrX 98483810 98483896 -64116034 + L1MB4 LINE L1 6093 6180 0 498 98 0 128 chrX 98484429 98484531 -64115399 + L1M1 LINE L1 5573 5661 -639 4165 185 65 24 chrX 98485481 98486001 -64113929 - L1M3b LINE L1 -3309 3041 2544 2206 103 7 10 chrX 98486001 98486301 -64113629 + AluSq SINE Alu 1 299 -14 4165 185 65 24 chrX 98486301 98487268 -64112662 - L1M3b LINE L1 -3806 2544 1503 251 275 46 28 chrX 98487355 98487464 -64112466 + MER20B DNA MER1_type 27 137 -646 439 123 386 9 chrX 98487579 98487693 -64112237 - MER4C LTR ERV1 -18 447 291 237 69 0 207 chrX 98487758 98487816 -64112114 - MER4A LTR ERV1 -313 351 306 1543 149 58 50 chrX 98487821 98488164 -64111766 - MER4A LTR ERV1 -318 346 1 3319 109 30 4 chrX 98488180 98488684 -64111246 - MER4A-int LTR ERV1 -4 6594 6078 228 75 0 0 chrX 98488784 98488824 -64111106 + L1PB1 LINE L1 6112 6151 0 427 307 88 74 chrX 98490058 98490301 -64109629 - L2 LINE L2 0 3272 3034 228 100 0 0 chrX 98490301 98490341 -64109589 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2220 100 0 0 chrX 98490341 98490621 -64109309 - AluSx SINE Alu -32 280 1 427 307 88 74 chrX 98490621 98490659 -64109271 - L2 LINE L2 -237 3035 2986 325 382 19 19 chrX 98490767 98490979 -64108951 - L2 LINE L2 -411 2903 2692 7066 22 19 0 chrX 98491142 98491968 -64107962 - L1PA4 LINE L1 -3 6152 5308 10584 136 27 40 chrX 98492217 98494250 -64105680 - L1P3 LINE L1 -4428 2033 6 2147 213 13 2 chrX 98494263 98494727 -64105203 - L1P LINE L1 -1488 4658 4190 481 333 73 19 chrX 98494767 98495178 -64104752 + L1M4 LINE L1 4388 4820 -1326 709 185 94 107 chrX 98496335 98496739 -64103191 - MER66A LTR ERV1 -153 340 97 452 281 91 25 chrX 98496943 98497142 -64102788 - MER58C DNA MER1_type -3 212 1 1089 258 50 0 chrX 98497211 98497529 -64102401 + L1MCc LINE L1 17 350 -6073 4125 127 66 14 chrX 98497608 98498276 -64101654 + L1PA12 LINE L1 5466 6168 0 290 167 17 0 chrX 98498343 98498403 -64101527 + GA-rich Low_complexity Low_complexity 3 63 0 200 248 29 76 chrX 98498667 98498772 -64101158 - L2 LINE L2 -60 3253 3154 21 0 0 0 chrX 98498898 98498919 -64101011 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 98499032 98499055 -64100875 + AT_rich Low_complexity Low_complexity 1 23 0 683 132 0 0 chrX 98499096 98499187 -64100743 - FLAM_A SINE Alu -16 126 36 2949 186 38 36 chrX 98499222 98499798 -64100132 - LTR22 LTR ERVK -3 577 1 969 122 44 17 chrX 98499842 98500022 -64099908 - L1MA8 LINE L1 -48 6243 6059 3758 73 0 0 chrX 98500025 98500492 -64099438 - MER41A LTR ERV1 -87 467 1 1117 84 7 0 chrX 98500492 98500635 -64099295 - MER41A-int LTR ERV1 -2 5944 5801 774 206 75 20 chrX 98500985 98501184 -64098746 - LTR36 LTR ERV1 -401 210 1 * 4840 131 60 9 chrX 98501184 98501984 -64097946 + MER49 LTR ERV1 83 923 0 836 190 99 62 chrX 98501984 98502219 -64097711 + MER90 LTR ERV1 365 608 -6 189 200 0 100 chrX 98502724 98502747 -64097183 - L2 LINE L2 -86 3186 3169 5190 109 28 37 chrX 98502747 98503533 -64096397 + LTR19C LTR ERV1 1 779 0 189 200 0 100 chrX 98503533 98503559 -64096371 - L2 LINE L2 -103 3169 3142 381 256 30 45 chrX 98503562 98503695 -64096235 - L2 LINE L2 0 3313 3183 341 277 36 15 chrX 98504790 98504947 -64094983 - L1ME LINE L1 -319 5802 5645 1924 155 3 0 chrX 98504950 98505240 -64094690 - AluJb SINE Alu -19 293 3 739 250 150 59 chrX 98505367 98505916 -64094014 + MLT1F1 LTR MaLR 1 595 0 534 291 35 9 chrX 98506516 98506743 -64093187 + L1MCa LINE L1 1054 1286 -5140 26 64 0 0 chrX 98507584 98507631 -64092299 + AT_rich Low_complexity Low_complexity 1 47 0 720 257 69 0 chrX 98508561 98508736 -64091194 + MIR SINE MIR 11 197 -65 6583 26 0 1 chrX 98508739 98509499 -64090431 - L1P1 LINE L1 -1500 4646 3888 6315 31 6 1 chrX 98509486 98510642 -64089288 + L1P1 LINE L1 4644 5803 -352 * 10561 31 2 2 chrX 98510742 98512017 -64087913 - L1P LINE L1 -2143 4003 2729 7499 42 15 1 chrX 98512012 98513189 -64086741 + L1P2 LINE L1 4459 5648 -506 * 200 338 0 0 chrX 98513643 98513723 -64086207 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 387 113 0 0 chrX 98515381 98515443 -64084487 + (TG)n Simple_repeat Simple_repeat 1 62 0 15767 87 9 1 chrX 98517909 98520076 -64079854 - L1P LINE L1 -1740 4406 2222 7371 153 55 54 chrX 98520178 98521353 -64078577 - MER4-int LTR ERV1 -499 6099 4680 2359 151 6 6 chrX 98521353 98521690 -64078240 + MER1B DNA MER1_type 1 337 0 7371 153 55 54 chrX 98521690 98522210 -64077720 - MER4-int LTR ERV1 -1918 4680 4162 804 178 0 0 chrX 98522436 98522565 -64077365 + FRAM SINE Alu 38 166 -10 2480 63 0 28 chrX 98523025 98523344 -64076586 + AluY SINE Alu 1 310 -1 25 0 0 0 chrX 98523373 98523398 -64076532 + AT_rich Low_complexity Low_complexity 1 25 0 4862 91 7 46 chrX 98523414 98524105 -64075825 - MER4A LTR ERV1 0 664 1 2491 118 3 21 chrX 98524114 98524495 -64075435 - MER4A-int LTR ERV1 -4 6594 6221 876 10 10 0 chrX 98524495 98524595 -64075335 + AluY SINE Alu 1 101 -209 745 307 172 46 chrX 98524751 98525409 -64074521 + L2 LINE L2 2010 2750 -564 641 334 28 74 chrX 98525532 98526024 -64073906 + L2 LINE L2 2749 3211 -61 1023 119 31 6 chrX 98527401 98527560 -64072370 + MLT1A1 LTR MaLR 1 163 -202 1302 229 59 41 chrX 98527704 98528166 -64071764 + LTR19C LTR ERV1 130 779 0 3085 184 9 3 chrX 98528166 98528742 -64071188 - L1 LINE L1 -2115 4031 3453 8587 132 21 37 chrX 98528746 98530636 -64069294 - L1P3 LINE L1 -4130 2331 433 22 0 0 0 chrX 98530727 98530749 -64069181 + AT_rich Low_complexity Low_complexity 1 22 0 14440 73 5 4 chrX 98531123 98533171 -64066759 - L1P LINE L1 -1562 4584 2535 207 0 0 0 chrX 98533526 98533549 -64066381 + (A)n Simple_repeat Simple_repeat 1 23 0 180 179 0 0 chrX 98534377 98534416 -64065514 + (TATG)n Simple_repeat Simple_repeat 4 42 0 518 256 96 19 chrX 98534586 98534742 -64065188 + MIR SINE MIR 28 195 -67 1956 47 8 8 chrX 98535386 98535640 -64064290 + L1PA5 LINE L1 5901 6154 0 304 241 80 0 chrX 98535930 98536042 -64063888 + MIR SINE MIR 20 140 -122 820 109 0 0 chrX 98536295 98536423 -64063507 - L1MB3 LINE L1 -352 5831 5704 260 309 8 73 chrX 98536424 98536481 -64063449 + L2 LINE L2 2518 2564 -750 2566 148 29 7 chrX 98536481 98536928 -64063002 + MER65C LTR ERV1 1 457 -4 260 309 8 73 chrX 98536928 98536993 -64062937 + L2 LINE L2 2564 2632 -682 26 74 0 0 chrX 98536994 98537048 -64062882 + AT_rich Low_complexity Low_complexity 1 54 0 651 164 0 0 chrX 98537535 98537645 -64062285 + MER66A LTR ERV1 369 478 0 2110 92 3 34 chrX 98538933 98539228 -64060702 + AluSx SINE Alu 3 288 -24 1321 225 68 24 chrX 98539482 98539946 -64059984 + MER110A LTR ERV1 19 479 -12 783 159 18 31 chrX 98540247 98540410 -64059520 + AluJo SINE Alu 45 205 -107 1148 155 63 158 chrX 98541008 98541128 -64058802 + MER2 DNA MER2_type 1 131 -214 1335 192 15 0 chrX 98541128 98541389 -64058541 + L1PB4 LINE L1 5892 6156 0 1148 155 63 158 chrX 98541389 98541649 -64058281 + MER2 DNA MER2_type 131 345 0 13648 152 20 7 chrX 98542099 98544387 -64055543 + L1MA1 LINE L1 19 2337 -5228 2445 123 19 31 chrX 98544387 98544808 -64055122 + MSTB LTR MaLR 1 416 -10 4704 97 14 10 chrX 98544818 98545236 -64054694 + L1MA1 LINE L1 2333 2759 -4806 2092 118 0 0 chrX 98545236 98545558 -64054372 + AluSq SINE Alu 5 326 0 4704 97 14 10 chrX 98545558 98545907 -64054023 + L1MA1 LINE L1 2759 3105 -4460 * 12663 151 11 11 chrX 98545890 98549036 -64050894 + L1MA1 LINE L1 4181 7328 -393 22 0 0 0 chrX 98549063 98549085 -64050845 + AT_rich Low_complexity Low_complexity 1 22 0 2052 125 3 7 chrX 98549098 98549394 -64050536 + AluSq SINE Alu 2 296 -17 2758 75 16 8 chrX 98549412 98549800 -64050130 + L1MA1 LINE L1 7331 7721 0 4946 124 16 12 chrX 98549818 98550632 -64049298 + L1MA3 LINE L1 5476 6292 -13 233 305 0 12 chrX 98551411 98551493 -64048437 + CT-rich Low_complexity Low_complexity 2 82 0 367 308 25 0 chrX 98552312 98552432 -64047498 - MIR SINE MIR -10 252 130 305 330 58 0 chrX 98552584 98552687 -64047243 - MIR SINE MIR -145 117 9 2104 131 3 0 chrX 98552843 98553141 -64046789 - AluSg SINE Alu -10 300 2 270 0 0 0 chrX 98553289 98553319 -64046611 + (CA)n Simple_repeat Simple_repeat 2 31 0 290 302 129 64 chrX 98553474 98553916 -64046014 - L2 LINE L2 -276 2996 2492 2009 186 8 8 chrX 98553916 98554281 -64045649 - MLT1A1 LTR MaLR 0 365 1 290 302 129 64 chrX 98554281 98554570 -64045360 - L2 LINE L2 -780 2492 2223 185 306 0 0 chrX 98555685 98555721 -64044209 - L2 LINE L2 -27 3245 3210 277 239 106 56 chrX 98556440 98556620 -64043310 - L1ME4a LINE L1 -2 6119 5931 3916 98 9 0 chrX 98556869 98557418 -64042512 + MER41A LTR ERV1 1 554 0 198 0 0 0 chrX 98557717 98557739 -64042191 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 40245 40 21 1 chrX 98557739 98563763 -64036167 - L1PA3 LINE L1 -10 6145 1 26 30 0 0 chrX 98563767 98563800 -64036130 + AT_rich Low_complexity Low_complexity 1 33 0 204 97 0 0 chrX 98563899 98563930 -64036000 + (TC)n Simple_repeat Simple_repeat 2 32 0 411 68 0 0 chrX 98563930 98563989 -64035941 + (CA)n Simple_repeat Simple_repeat 1 59 0 278 321 48 11 chrX 98564194 98564381 -64035549 - L1ME4a LINE L1 -400 5721 5528 4391 181 18 35 chrX 98564443 98565320 -64034610 + MER21B LTR ERV1 1 862 -1 328 216 14 14 chrX 98565584 98565658 -64034272 - L1MC/D LINE L1 -2135 5673 5600 227 299 65 0 chrX 98565678 98565755 -64034175 + L2 LINE L2 2218 2299 -1015 2819 91 9 35 chrX 98565756 98566035 -64033895 + L1MA1 LINE L1 5864 6128 -174 1886 166 0 0 chrX 98566035 98566325 -64033605 + AluJb SINE Alu 9 298 -14 2819 91 9 35 chrX 98566325 98566496 -64033434 + L1MA1 LINE L1 6128 6302 0 23 54 0 0 chrX 98566496 98566533 -64033397 + AT_rich Low_complexity Low_complexity 1 37 0 321 282 64 10 chrX 98566537 98566661 -64033269 - L1MC/D LINE L1 -708 5454 5338 310 148 10 109 chrX 98566996 98567097 -64032833 + L2 LINE L2 2328 2418 -896 449 374 11 0 chrX 98568425 98568604 -64031326 + L2 LINE L2 2465 2645 -669 1629 193 29 29 chrX 98568785 98569159 -64030771 + MLT1A2 LTR MaLR 1 374 0 4386 152 63 12 chrX 98569553 98570332 -64029598 + MER21B LTR ERV1 1 819 -44 198 220 22 22 chrX 98570393 98570484 -64029446 + CT-rich Low_complexity Low_complexity 3 93 0 4701 173 21 17 chrX 98570501 98571681 -64028249 - L1MB7 LINE L1 -18 6166 4986 3508 206 14 14 chrX 98571746 98572314 -64027616 - L1MB7 LINE L1 -1171 4975 4405 1608 188 3 26 chrX 98572314 98572623 -64027307 - AluJo SINE Alu -10 302 1 3508 206 14 14 chrX 98572623 98572964 -64026966 - L1MB7 LINE L1 -1740 4406 4066 267 330 124 33 chrX 98572993 98573175 -64026755 + L2 LINE L2 2667 2884 -430 1193 122 53 32 chrX 98573175 98573366 -64026564 - L1MA8 LINE L1 0 6291 6092 1518 175 64 12 chrX 98573366 98573692 -64026238 + MER2 DNA MER2_type 2 344 0 1193 122 53 32 chrX 98573692 98573747 -64026183 - L1MA8 LINE L1 -199 6092 6040 267 330 124 33 chrX 98573747 98573837 -64026093 + L2 LINE L2 2884 2964 -350 671 316 81 45 chrX 98574126 98574633 -64025297 + L2 LINE L2 1528 2052 -1262 1280 193 104 11 chrX 98574848 98575117 -64024813 - AluJb SINE Alu -13 299 6 338 269 82 16 chrX 98575131 98575313 -64024617 - L1MC4a LINE L1 -1928 5880 5687 6181 21 3 3 chrX 98575397 98576117 -64023813 - L1PA4 LINE L1 -13 6142 5423 462 327 29 39 chrX 98576204 98576409 -64023521 - MIR SINE MIR -4 258 56 470 288 30 15 chrX 98576454 98576586 -64023344 - MIR SINE MIR -109 153 20 692 266 133 51 chrX 98576805 98577158 -64022772 + L2 LINE L2 2924 3305 -8 600 264 11 23 chrX 98577375 98577549 -64022381 + L2 LINE L2 3142 3313 0 506 295 65 0 chrX 98577749 98577888 -64022042 - MIR SINE MIR -87 175 28 408 266 80 103 chrX 98578223 98578562 -64021368 + L1MC4a LINE L1 5315 5450 -671 1742 178 10 7 chrX 98578562 98578865 -64021065 + AluJo SINE Alu 1 304 -8 408 266 80 103 chrX 98578865 98579051 -64020879 + L1MC4a LINE L1 5450 5639 -482 30 45 0 0 chrX 98579188 98579232 -64020698 + AT_rich Low_complexity Low_complexity 1 44 0 2186 119 0 0 chrX 98580048 98580343 -64019587 + AluSc SINE Alu 1 295 -14 952 260 9 5 chrX 98581942 98582165 -64017765 + MER58A DNA MER1_type 1 224 0 2086 128 0 3 chrX 98582396 98582692 -64017238 - AluSx SINE Alu -17 295 1 22 0 0 0 chrX 98582698 98582720 -64017210 + AT_rich Low_complexity Low_complexity 1 22 0 2242 102 0 0 chrX 98582720 98583024 -64016906 - AluSc SINE Alu -5 304 1 199 326 22 11 chrX 98584693 98584785 -64015145 + L2 LINE L2 2864 2956 -316 362 73 0 18 chrX 98585024 98585079 -64014851 + (TCCCC)n Simple_repeat Simple_repeat 4 57 0 8038 100 30 43 chrX 98585079 98586342 -64013588 + SVA Other Other 1 1246 -140 23 0 0 0 chrX 98586342 98586365 -64013565 + AT_rich Low_complexity Low_complexity 1 23 0 320 229 57 19 chrX 98586365 98586470 -64013460 + MIR SINE MIR 122 230 -32 332 208 0 0 chrX 98587045 98587117 -64012813 - MER116 DNA Mariner 0 80 9 193 289 0 0 chrX 98587280 98587325 -64012605 - L2 LINE L2 -15 3257 3213 359 300 50 33 chrX 98587388 98587576 -64012354 - MIR SINE MIR -64 198 9 209 306 0 47 chrX 98587694 98587779 -64012151 - L2 LINE L2 -1000 2314 2234 202 255 20 0 chrX 98587784 98587835 -64012095 + L2 LINE L2 3262 3313 0 248 225 90 0 chrX 98589639 98589750 -64010180 - L1M4 LINE L1 -851 5295 5175 197 360 45 0 chrX 98589916 98590005 -64009925 + MIR SINE MIR 30 122 -86 297 89 0 0 chrX 98590116 98590161 -64009769 + (CAT)n Simple_repeat Simple_repeat 1 45 0 239 358 90 8 chrX 98590229 98590416 -64009514 + MIR SINE MIR 14 214 -48 1449 288 104 13 chrX 98590703 98591242 -64008688 + MLT1G1 LTR MaLR 1 588 -7 376 308 7 28 chrX 98593043 98593192 -64006738 - MIR SINE MIR -63 145 3 2207 123 3 0 chrX 98593335 98593637 -64006293 + AluSq SINE Alu 9 311 -2 196 263 35 0 chrX 98593666 98593723 -64006207 + L2 LINE L2 3254 3312 -1 23 68 0 0 chrX 98594042 98594086 -64005844 + AT_rich Low_complexity Low_complexity 1 44 0 203 317 119 10 chrX 98594345 98594446 -64005484 + MIR SINE MIR 31 142 -66 343 286 169 43 chrX 98594538 98594769 -64005161 + MIR SINE MIR 3 262 0 272 298 149 29 chrX 98595205 98595413 -64004517 + L1ME LINE L1 5421 5653 -513 407 258 78 0 chrX 98597170 98597298 -64002632 + L1ME LINE L1 5541 5678 -443 389 0 0 0 chrX 98597571 98597617 -64002313 - MADE1 DNA Mariner -34 46 1 506 306 24 90 chrX 98598071 98598326 -64001604 - L2 LINE L2 -69 3203 2966 282 95 0 0 chrX 98598922 98598964 -64000966 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1758 90 22 2 chrX 98598965 98599274 -64000656 - THE1B LTR MaLR 0 364 1 6665 74 12 1 chrX 98599390 98600416 -63999514 + L1PA13 LINE L1 5128 6163 0 327 65 0 0 chrX 98600708 98600754 -63999176 + (TG)n Simple_repeat Simple_repeat 1 46 0 424 279 93 0 chrX 98601516 98601677 -63998253 + MIR SINE MIR 21 196 -66 2442 71 3 0 chrX 98601938 98602246 -63997684 - AluSc SINE Alu 0 309 1 352 248 114 0 chrX 98602472 98602577 -63997353 + MIR SINE MIR 13 129 -133 631 168 30 12 chrX 98602577 98602744 -63997186 + CT-rich Low_complexity Low_complexity 2 171 0 401 317 0 0 chrX 98602765 98602885 -63997045 + MIR SINE MIR 143 262 0 540 279 89 38 chrX 98602906 98603064 -63996866 - MER96 DNA MER1_type? 0 175 10 491 286 44 31 chrX 98603122 98603327 -63996603 - MIR SINE MIR -19 243 34 404 349 33 7 chrX 98603446 98603598 -63996332 + MIR3 SINE MIR 52 207 -1 265 239 0 14 chrX 98603887 98603958 -63995972 - MARNA DNA Mariner -342 244 175 706 157 9 0 chrX 98604094 98604209 -63995721 + FLAM_A SINE Alu 1 116 -17 253 93 65 37 chrX 98604582 98604690 -63995240 + (TATAA)n Simple_repeat Simple_repeat 2 112 0 23 0 0 0 chrX 98605031 98605054 -63994876 + AT_rich Low_complexity Low_complexity 1 23 0 1039 165 0 0 chrX 98606819 98606995 -63992935 - L1PA16 LINE L1 -9 6157 5982 3658 153 75 11 chrX 98606996 98608193 -63991737 - L1PA16 LINE L1 -419 5746 4495 415 285 116 12 chrX 98609001 98609173 -63990757 + MIR SINE MIR 67 256 -6 571 317 25 5 chrX 98609573 98609772 -63990158 + MIR SINE MIR 50 252 -10 303 323 11 0 chrX 98609874 98609967 -63989963 + L1ME4a LINE L1 4743 4836 -1310 346 287 54 72 chrX 98610078 98610357 -63989573 + L1ME4a LINE L1 5847 6120 -1 241 276 70 58 chrX 98610410 98610566 -63989364 + MIR SINE MIR 20 177 -85 199 236 18 0 chrX 98610657 98610712 -63989218 + MIR SINE MIR 96 151 -111 257 256 179 8 chrX 98611507 98611624 -63988306 - MIR SINE MIR -19 243 107 232 254 0 0 chrX 98611627 98611690 -63988240 - HsTC2 DNA Tc2 -25 1873 1811 241 225 28 0 chrX 98611945 98612016 -63987914 + (TA)n Simple_repeat Simple_repeat 2 74 0 300 270 81 9 chrX 98612060 98612171 -63987759 + MIR3 SINE MIR 81 199 -9 26 0 0 0 chrX 98612611 98612637 -63987293 + AT_rich Low_complexity Low_complexity 1 26 0 522 253 41 107 chrX 98613447 98613578 -63986352 - L1M4 LINE L1 -880 5266 5128 690 183 0 0 chrX 98613578 98613693 -63986237 - FLAM_A SINE Alu -18 115 1 522 253 41 107 chrX 98613693 98614075 -63985855 - L1M4 LINE L1 -1018 5128 4787 361 94 0 0 chrX 98614110 98614163 -63985767 + MER53 DNA DNA 134 186 -3 477 235 27 20 chrX 98614187 98614336 -63985594 - L1M4 LINE L1 -1374 4772 4623 21027 156 24 11 chrX 98614446 98614918 -63985012 - L1MA1 LINE L1 0 7721 7257 2153 93 0 59 chrX 98614918 98615239 -63984691 - AluSx SINE Alu -10 302 1 21027 156 24 11 chrX 98615239 98616473 -63983457 - L1MA1 LINE L1 -464 7257 6041 2623 126 44 0 chrX 98616473 98616879 -63983051 + MSTA LTR MaLR 5 428 0 21027 156 24 11 chrX 98616879 98621054 -63978876 - L1MA1 LINE L1 -1680 6041 1707 297 0 0 0 chrX 98621054 98621087 -63978843 + (TC)n Simple_repeat Simple_repeat 2 34 0 21027 156 24 11 chrX 98621087 98622804 -63977126 - L1MA1 LINE L1 -6014 1707 14 866 272 34 34 chrX 98622834 98623282 -63976648 - L1MDa LINE L1 -3494 3046 2599 341 298 106 34 chrX 98623305 98623513 -63976417 - L1MDa LINE L1 -3899 2641 2419 235 45 68 0 chrX 98623622 98623666 -63976264 + T-rich Low_complexity Low_complexity 2 48 0 2248 237 28 34 chrX 98627499 98628182 -63971748 - L1ME1 LINE L1 -6 6160 5482 2863 3 0 0 chrX 98628445 98628752 -63971178 + AluYb8 SINE Alu 1 307 -11 1785 91 0 4 chrX 98628948 98629179 -63970751 + AluSq SINE Alu 1 230 -83 459 143 0 0 chrX 98629294 98629364 -63970566 - L1M1 LINE L1 -5488 2077 2008 214 318 24 24 chrX 98629615 98629700 -63970230 - L2 LINE L2 -222 3050 2966 183 100 0 0 chrX 98630400 98630430 -63969500 + (TG)n Simple_repeat Simple_repeat 1 30 0 257 290 0 0 chrX 98630447 98630509 -63969421 + (CATA)n Simple_repeat Simple_repeat 2 63 0 26 0 0 0 chrX 98630635 98630661 -63969269 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chrX 98631053 98631081 -63968849 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 98631183 98631211 -63968719 + AT_rich Low_complexity Low_complexity 1 28 0 1796 159 0 31 chrX 98631458 98631749 -63968181 + AluJb SINE Alu 1 280 -32 185 81 0 27 chrX 98631754 98631791 -63968139 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 281 268 36 36 chrX 98632053 98632165 -63967765 + L2 LINE L2 3011 3122 -191 439 230 291 12 chrX 98632209 98632374 -63967556 - MIR SINE MIR -35 227 17 317 333 0 26 chrX 98632409 98632526 -63967404 + L2 LINE L2 3139 3252 -61 768 255 21 52 chrX 98632565 98632854 -63967076 - L1ME LINE L1 -3798 2282 1994 493 176 0 76 chrX 98632854 98632973 -63966957 - L1PA15 LINE L1 -3 6162 2070 2026 210 41 86 chrX 98632974 98633554 -63966376 - MLT2B3 LTR ERVL 0 554 1 917 141 0 0 chrX 98633554 98633696 -63966234 - HERVL-B3 LTR ERVL 0 5654 5513 1845 142 94 9 chrX 98633696 98634027 -63965903 - L1PA16 LINE L1 -119 6047 5689 580 169 34 34 chrX 98634783 98634901 -63965029 + MER74A LTR ERVL 436 553 -5 5759 127 15 0 chrX 98634908 98636108 -63963822 - L1PA16 LINE L1 0 6166 4935 1096 294 45 22 chrX 98636112 98636649 -63963281 - L1ME LINE L1 -4233 2028 1480 2490 113 3 23 chrX 98636677 98637021 -63962909 + MER1B DNA MER1_type 1 337 0 814 269 34 69 chrX 98637072 98637493 -63962437 - L1ME LINE L1 -5565 505 96 1284 152 14 0 chrX 98637722 98637939 -63961991 - L1MA4 LINE L1 -7 6293 6074 3174 136 18 2 chrX 98637939 98638433 -63961497 + L1MA4 LINE L1 5575 6076 -224 281 307 40 10 chrX 98638432 98638533 -63961397 - L1ME LINE L1 -5955 115 12 * 303 175 0 0 chrX 98639227 98639284 -63960646 + (TG)n Simple_repeat Simple_repeat 2 58 0 2111 185 24 0 chrX 98639337 98639710 -63960220 - L1MB5 LINE L1 -186 5988 5607 825 163 0 16 chrX 98640621 98640750 -63959180 + FLAM_A SINE Alu 1 127 -6 344 106 15 0 chrX 98640759 98640825 -63959105 - L1MA7 LINE L1 0 6291 6225 241 182 0 61 chrX 98640825 98640891 -63959039 - LTR66 LTR ERVL -171 439 378 374 149 95 0 chrX 98640891 98640965 -63958965 - L1MA7 LINE L1 -87 6204 6124 782 270 107 36 chrX 98640965 98641302 -63958628 - Charlie8 DNA MER1_type -2056 361 1 881 171 29 69 chrX 98643114 98643360 -63956570 + L1PA15 LINE L1 4241 4476 -1670 587 29 0 0 chrX 98643361 98643429 -63956501 + AluSp/q SINE Alu 235 302 -11 5836 117 25 26 chrX 98643429 98644974 -63954956 + L1PA15 LINE L1 4480 6033 -132 1941 132 51 48 chrX 98644974 98645346 -63954584 + THE1C LTR MaLR 1 373 -2 5836 117 25 26 chrX 98645346 98645479 -63954451 + L1PA15 LINE L1 6033 6165 0 249 313 12 0 chrX 98645834 98645917 -63954013 - L2 LINE L2 -998 2316 2233 1687 218 59 43 chrX 98646583 98647080 -63952850 - L1MA9 LINE L1 -33 6279 5779 1722 196 13 65 chrX 98647420 98647807 -63952123 + MLT1A2 LTR MaLR 1 367 -7 223 285 79 48 chrX 98648237 98648402 -63951528 + MIR SINE MIR 46 215 -47 185 280 203 42 chrX 98648718 98648836 -63951094 + MIR SINE MIR 56 192 -70 332 279 64 14 chrX 98649332 98649472 -63950458 + L1ME4a LINE L1 5964 6110 -11 782 168 0 8 chrX 98649892 98650023 -63949907 + MER5A DNA MER1_type 3 132 -57 190 235 0 59 chrX 98650079 98650130 -63949800 - MER5A DNA MER1_type -130 59 12 2216 109 3 0 chrX 98650896 98651190 -63948740 + AluSp SINE Alu 1 295 -18 21 36 0 0 chrX 98651765 98651793 -63948137 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 98652368 98652389 -63947541 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 98652576 98652606 -63947324 + AT_rich Low_complexity Low_complexity 1 30 0 25053 42 1 5 chrX 98652609 98656317 -63943613 - L1PA5 LINE L1 -7 6147 2450 17371 58 4 4 chrX 98656317 98658492 -63941438 - L1PA5 LINE L1 -3972 2174 1 8151 115 33 8 chrX 98658493 98659694 -63940236 - L1P LINE L1 -4904 1242 11 367 188 0 14 chrX 98659724 98659793 -63940137 - Tigger3(Golem) DNA MER2_type 0 3038 2971 4582 190 58 109 chrX 98659795 98661115 -63938815 + MER52A LTR ERV1 1 1253 -502 2126 119 102 15 chrX 98661115 98661450 -63938480 - THE1B LTR MaLR 0 364 1 12503 102 2 0 chrX 98661450 98663027 -63936903 - THE1B-int LTR MaLR 0 1580 1 1169 127 51 35 chrX 98663027 98663224 -63936706 - THE1B LTR MaLR 0 364 165 29598 123 22 58 chrX 98663226 98669630 -63930300 - L1PA8 LINE L1 -13 6159 2 1040 139 90 0 chrX 98669635 98669801 -63930129 - THE1B LTR MaLR -183 181 1 * 2901 185 18 6 chrX 98669801 98670302 -63929628 + MER52A LTR ERV1 1249 1755 0 1624 91 37 21 chrX 98670302 98670596 -63929334 - Tigger3(Golem) DNA MER2_type -66 2963 18 384 82 0 0 chrX 98670604 98670665 -63929265 + (CA)n Simple_repeat Simple_repeat 2 62 0 347 258 164 19 chrX 98671079 98671238 -63928692 + MIR SINE MIR 56 237 -25 250 384 42 19 chrX 98671637 98671853 -63928077 + MIR SINE MIR 2 222 -40 1954 138 111 75 chrX 98671853 98672266 -63927664 - MSTA LTR MaLR 0 428 1 2370 39 7 0 chrX 98672566 98672851 -63927079 + L1PA5 LINE L1 4204 4490 -1656 323 29 0 0 chrX 98672851 98672885 -63927045 + L1PA6 LINE L1 6105 6139 -15 7701 47 20 1 chrX 98672897 98674547 -63925383 + L1PA5 LINE L1 4488 6151 -3 268 258 50 41 chrX 98675251 98675383 -63924547 - L1ME LINE L1 -303 5818 5705 255 191 34 11 chrX 98675442 98675502 -63924428 + MER5A DNA MER1_type 4 66 -123 360 0 0 0 chrX 98675516 98675556 -63924374 + (TG)n Simple_repeat Simple_repeat 2 41 0 1656 163 41 66 chrX 98675559 98675921 -63924009 - MLT2D LTR ERVL -61 353 1 217 244 0 0 chrX 98675921 98675966 -63923964 + MER5A DNA MER1_type 47 91 -98 619 150 0 117 chrX 98676659 98676779 -63923151 + FLAM_A SINE Alu 18 123 -19 238 224 0 0 chrX 98677195 98677244 -63922686 + (TA)n Simple_repeat Simple_repeat 1 49 0 282 56 0 0 chrX 98677436 98677472 -63922458 + (TG)n Simple_repeat Simple_repeat 2 37 0 4826 202 26 13 chrX 98679545 98681473 -63918457 - L1MB7 LINE L1 -16 6168 4211 4410 73 29 26 chrX 98681575 98682578 -63917352 - MER11A LTR ERVK 0 1266 1 503 337 39 0 chrX 98683082 98683263 -63916667 - MIR SINE MIR -74 188 1 482 196 170 33 chrX 98683691 98683844 -63916086 - MIR SINE MIR -71 191 18 208 159 68 0 chrX 98685531 98685575 -63914355 + CT-rich Low_complexity Low_complexity 6 52 0 221 0 35 0 chrX 98686992 98687021 -63912909 + (GA)n Simple_repeat Simple_repeat 2 31 0 267 31 0 0 chrX 98688021 98688053 -63911877 + (TGG)n Simple_repeat Simple_repeat 1 32 0 702 144 27 7 chrX 98688896 98689042 -63910888 + CT-rich Low_complexity Low_complexity 1 149 0 2044 154 0 0 chrX 98689042 98689353 -63910577 - AluSx SINE Alu -1 311 1 456 249 45 63 chrX 98690572 98690793 -63909137 + L1M4 LINE L1 2549 2765 -3381 1352 185 22 37 chrX 98691029 98691353 -63908577 + L2 LINE L2 2428 2746 -568 302 220 11 33 chrX 98691404 98691495 -63908435 + L1MC5 LINE L1 6962 7050 -911 251 272 89 51 chrX 98692119 98692277 -63907653 - MIR SINE MIR -79 183 20 521 279 57 82 chrX 98694166 98694410 -63905520 + MIR SINE MIR 12 249 -13 383 328 62 58 chrX 98694842 98695242 -63904688 + L1M3d LINE L1 413 814 -5489 3199 241 85 25 chrX 98695295 98695342 -63904588 + L1M3d LINE L1 801 844 -5538 2369 89 0 0 chrX 98695342 98695644 -63904286 - AluY SINE Alu -9 302 1 3199 241 85 25 chrX 98695644 98697210 -63902720 + L1M3d LINE L1 844 2450 -3932 3092 81 0 10 chrX 98697228 98697623 -63902307 - L1PA8A LINE L1 -13 6118 5728 5274 224 30 11 chrX 98697628 98698303 -63901627 + L1M3d LINE L1 2587 3248 -3134 2536 62 0 0 chrX 98698303 98698607 -63901323 + AluY SINE Alu 1 304 -7 5274 224 30 11 chrX 98698607 98699339 -63900591 + L1M3d LINE L1 3248 4021 -2361 862 157 5 4 chrX 98699341 98699557 -63900373 + AluJb SINE Alu 2 294 -18 1436 191 15 0 chrX 98699560 98699832 -63900098 + L1M3d LINE L1 4018 4293 -2089 249 163 0 0 chrX 98699832 98699881 -63900049 + (CA)n Simple_repeat Simple_repeat 2 50 0 699 282 67 52 chrX 98700064 98700198 -63899732 - L1M4 LINE L1 -1829 4317 4186 381 43 0 0 chrX 98700198 98700245 -63899685 + (TG)n Simple_repeat Simple_repeat 2 48 0 699 282 67 52 chrX 98700245 98700681 -63899249 - L1M4 LINE L1 -1960 4186 3739 25 65 0 0 chrX 98700747 98700793 -63899137 + AT_rich Low_complexity Low_complexity 1 46 0 11443 29 1 0 chrX 98700877 98702920 -63897010 - L1PA4 LINE L1 -1 6154 4110 337 206 0 0 chrX 98703343 98703406 -63896524 + MLT1I LTR MaLR 347 409 0 234 282 105 16 chrX 98703407 98703531 -63896399 + MIR SINE MIR 128 262 0 30 0 0 0 chrX 98703865 98703895 -63896035 + AT_rich Low_complexity Low_complexity 1 30 0 648 0 0 0 chrX 98704984 98705055 -63894875 - L1P1 LINE L1 -583 5572 5502 * 2601 3 0 0 chrX 98705051 98705336 -63894594 + L1HS LINE L1 5871 6155 0 234 0 0 0 chrX 98705485 98705511 -63894419 + (CA)n Simple_repeat Simple_repeat 2 27 0 817 347 20 46 chrX 98706813 98707514 -63892416 + PABL_B-int LTR ERV1 988 1670 -5452 362 329 61 37 chrX 98707922 98708250 -63891680 + PABL_B-int LTR ERV1 1994 2329 -4793 2457 321 50 42 chrX 98708496 98710029 -63889901 + PABL_B-int LTR ERV1 2765 4308 -2814 12391 155 94 15 chrX 98710335 98712285 -63887645 + L1MA2 LINE L1 1184 3424 -4141 2195 118 0 0 chrX 98712285 98712573 -63887357 + AluSg SINE Alu 2 289 -21 12391 155 94 15 chrX 98712573 98713416 -63886514 + L1MA2 LINE L1 3424 4199 -3366 6265 24 0 0 chrX 98713415 98714392 -63885538 - L1P2 LINE L1 -513 5642 4666 * 2462 48 0 33 chrX 98714355 98714686 -63885244 + L1PA4 LINE L1 5833 6152 -3 * 1011 227 59 128 chrX 98714703 98714959 -63884971 + L1M4 LINE L1 2111 2383 -3763 1747 144 61 0 chrX 98714959 98715237 -63884693 - AluSq SINE Alu -18 295 1 1011 227 59 128 chrX 98715237 98715693 -63884237 + L1M4 LINE L1 2383 2774 -3372 8030 28 6 0 chrX 98715767 98717226 -63882704 + L1PA3 LINE L1 4693 6155 0 11555 147 29 25 chrX 98717246 98718370 -63881560 + L1MA2 LINE L1 4492 5610 -2113 180 0 0 0 chrX 98718370 98718390 -63881540 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6829 60 21 0 chrX 98718390 98719446 -63880484 - L1PA8A LINE L1 -6 6125 5059 11555 147 29 25 chrX 98719446 98719651 -63880279 + L1MA2 LINE L1 5610 5813 -1910 7726 48 1 0 chrX 98719651 98721222 -63878708 + L1PA4 LINE L1 4589 6152 -3 11555 147 29 25 chrX 98721222 98723008 -63876922 + L1MA2 LINE L1 5813 7617 -106 1498 191 10 96 chrX 98723795 98724193 -63875737 - MLT1A1 LTR MaLR -1 364 1 423 0 0 0 chrX 98724350 98724397 -63875533 + (CA)n Simple_repeat Simple_repeat 2 48 0 677 236 87 17 chrX 98724508 98724710 -63875220 - HERV16 LTR ERVL -4147 849 626 581 171 119 45 chrX 98724710 98724886 -63875044 + MER53 DNA DNA 1 189 0 677 236 87 17 chrX 98724886 98724924 -63875006 - HERV16 LTR ERVL -4370 626 592 331 224 71 0 chrX 98724925 98725010 -63874920 - HERV16 LTR ERVL -4585 411 321 309 306 111 61 chrX 98725051 98725231 -63874699 - HERV16 LTR ERVL -4734 262 74 753 311 87 10 chrX 98725283 98725595 -63874335 - LTR16A LTR ERVL -1 449 114 485 301 128 14 chrX 98726389 98726671 -63873259 - L2 LINE L2 -709 2605 2292 192 287 116 112 chrX 98726693 98726951 -63872979 + L2 LINE L2 3011 3269 -3 246 350 96 0 chrX 98726955 98727112 -63872818 - L3 LINE CR1 -154 1423 1252 259 264 33 11 chrX 98727248 98727339 -63872591 - L3 LINE CR1 -738 839 747 230 381 60 0 chrX 98728092 98728226 -63871704 - L3 LINE CR1 -1019 558 417 800 153 0 0 chrX 98728288 98728399 -63871531 - FLAM_C SINE Alu -25 118 8 230 328 0 0 chrX 98728503 98728570 -63871360 - MIR SINE MIR -114 94 28 966 167 25 0 chrX 98732037 98732199 -63867731 + FAM SINE Alu 1 166 -9 1405 185 67 15 chrX 98732318 98732622 -63867308 - AluJo SINE Alu 0 318 1 285 283 87 15 chrX 98732750 98732923 -63867007 - MIR SINE MIR -10 252 9 553 231 75 44 chrX 98733431 98733591 -63866339 - MIR3 SINE MIR -6 202 38 233 303 125 26 chrX 98733627 98733779 -63866151 + L2 LINE L2 2245 2411 -903 233 364 40 28 chrX 98734633 98734809 -63865121 + MER5A DNA MER1_type 9 186 -3 717 275 12 6 chrX 98735091 98735262 -63864668 + MER5B DNA MER1_type 2 173 -5 1434 133 50 0 chrX 98735273 98735491 -63864439 - MER30 DNA MER1_type 0 230 2 654 236 52 58 chrX 98736170 98736344 -63863586 - MER5B DNA MER1_type -5 173 1 1088 73 7 7 chrX 98736405 98736555 -63863375 + L1PA11 LINE L1 6021 6170 -4 189 336 180 8 chrX 98736648 98736770 -63863160 - MIR SINE MIR -6 256 114 416 339 94 74 chrX 98737171 98737510 -63862420 - L2 LINE L2 -4 3268 2923 710 339 73 62 chrX 98737562 98738394 -63861536 - L2 LINE L2 -467 2847 2007 262 336 87 50 chrX 98738648 98739005 -63860925 - L2 LINE L2 -1877 1437 1068 279 366 83 16 chrX 98739037 98739291 -63860639 - L2 LINE L2 -735 2579 2309 21 0 0 0 chrX 98739328 98739349 -63860581 + AT_rich Low_complexity Low_complexity 1 21 0 336 246 52 52 chrX 98740223 98740357 -63859573 - L2 LINE L2 0 3313 3180 316 336 92 31 chrX 98740566 98740795 -63859135 - L2 LINE L2 -458 2856 2614 564 181 201 27 chrX 98740798 98740947 -63858983 - MER5A DNA MER1_type -6 183 9 182 300 89 56 chrX 98742046 98742136 -63857794 + MIR3 SINE MIR 113 205 -3 2939 15 3 0 chrX 98743814 98744154 -63855776 + L1PA2 LINE L1 5813 6153 -2 1055 251 64 59 chrX 98745087 98745423 -63854507 + MLT1J LTR MaLR 10 350 -161 2327 70 18 0 chrX 98745423 98745707 -63854223 + AluSg SINE Alu 2 290 -20 1055 251 64 59 chrX 98745707 98745793 -63854137 + MLT1J LTR MaLR 350 434 -77 35 0 0 0 chrX 98745935 98745970 -63853960 + AT_rich Low_complexity Low_complexity 1 35 0 6144 157 8 5 chrX 98745972 98748114 -63851816 - L1PB1 LINE L1 -8 6143 4001 450 317 112 22 chrX 98748403 98748902 -63851028 - L1ME3A LINE L1 -242 5928 5385 271 250 100 14 chrX 98748908 98749048 -63850882 - L1ME3A LINE L1 -804 5342 5191 578 266 104 3 chrX 98749170 98749505 -63850425 + L1ME4a LINE L1 4801 5169 -977 438 342 43 11 chrX 98749849 98750033 -63849897 - MIR SINE MIR -44 218 29 343 333 102 23 chrX 98750268 98750445 -63849485 + MIR3 SINE MIR 14 204 -4 271 331 136 13 chrX 98750650 98750804 -63849126 + MIR SINE MIR 20 192 -70 1780 134 44 24 chrX 98751314 98751612 -63848318 + AluJo SINE Alu 1 304 -8 323 257 104 28 chrX 98752179 98752323 -63847607 + L1ME4a LINE L1 5870 6024 -97 6235 198 141 34 chrX 98752432 98754552 -63845378 + L1M3e LINE L1 1 2346 -4691 17222 164 19 9 chrX 98754986 98758182 -63841748 + L1MA1 LINE L1 16 3243 -4322 14782 159 14 12 chrX 98759678 98762243 -63837687 + L1MA1 LINE L1 3238 5797 -1924 758 123 0 0 chrX 98762243 98762349 -63837581 + U6 snRNA snRNA 2 107 0 5054 92 8 7 chrX 98762350 98763074 -63836856 + L1PA8 LINE L1 5447 6171 -1 14782 159 14 12 chrX 98763074 98764977 -63834953 + L1MA1 LINE L1 5796 7720 -1 2256 96 13 7 chrX 98764977 98765099 -63834831 + AluSc SINE Alu 1 121 -188 351 0 0 0 chrX 98765099 98765138 -63834792 + (CA)n Simple_repeat Simple_repeat 2 40 0 2256 96 13 7 chrX 98765138 98765318 -63834612 + AluSc SINE Alu 121 305 -4 186 125 31 0 chrX 98765920 98765952 -63833978 - L2 LINE L2 -12 3260 3228 224 427 24 55 chrX 98766175 98766428 -63833502 - L2 LINE L2 -87 3185 2941 1888 149 7 20 chrX 98766697 98766998 -63832932 - AluJb SINE Alu -15 297 1 205 329 66 13 chrX 98767695 98767771 -63832159 + MER5A DNA MER1_type 60 139 -50 485 189 88 95 chrX 98767831 98767979 -63831951 + MER5B DNA MER1_type 1 147 -31 247 183 33 17 chrX 98767985 98768045 -63831885 - L3 LINE CR1 -278 1299 1239 196 317 50 0 chrX 98768238 98768298 -63831632 + MIR SINE MIR 66 128 -80 440 119 71 0 chrX 98768390 98768474 -63831456 - L1MB2 LINE L1 0 6171 6082 538 290 30 61 chrX 98768477 98768774 -63831156 - L3 LINE CR1 -555 1022 735 440 258 41 4 chrX 98768928 98769034 -63830896 - MIR SINE MIR -84 124 19 2158 105 4 0 chrX 98769049 98769326 -63830604 - AluSx SINE Alu -14 298 21 215 298 125 19 chrX 98769907 98770011 -63829919 + MIR SINE MIR 13 127 -135 2337 104 0 0 chrX 98770767 98771065 -63828865 - AluSx SINE Alu -14 298 1 733 140 91 0 chrX 98771536 98771679 -63828251 + L1MB4 LINE L1 6023 6178 -2 21 36 0 0 chrX 98771680 98771708 -63828222 + AT_rich Low_complexity Low_complexity 1 28 0 240 333 120 38 chrX 98772153 98772336 -63827594 + MIR SINE MIR 51 248 -14 369 183 0 56 chrX 98772414 98772434 -63827496 - MIR3 SINE MIR -36 172 152 1105 187 38 5 chrX 98772434 98772643 -63827287 - MER20 DNA MER1_type 0 219 4 369 183 0 56 chrX 98772643 98772693 -63827237 - MIR3 SINE MIR -56 152 106 24 0 0 0 chrX 98774836 98774860 -63825070 + AT_rich Low_complexity Low_complexity 1 24 0 326 245 53 64 chrX 98774894 98774988 -63824942 + L2 LINE L2 3179 3271 -1 2072 130 0 0 chrX 98775003 98775310 -63824620 - AluY SINE Alu -4 307 1 358 75 30 0 chrX 98776044 98776111 -63823819 + (TA)n Simple_repeat Simple_repeat 2 70 0 279 0 0 0 chrX 98776116 98776147 -63823783 + (GA)n Simple_repeat Simple_repeat 2 32 0 214 323 21 65 chrX 98776535 98776628 -63823302 - MIR3 SINE MIR -52 156 68 183 129 0 0 chrX 98778449 98778480 -63821450 + (CCG)n Simple_repeat Simple_repeat 1 31 0 267 31 0 0 chrX 98778531 98778563 -63821367 + (CCG)n Simple_repeat Simple_repeat 3 34 0 2268 96 13 19 chrX 98779063 98779375 -63820555 - AluSg SINE Alu 0 310 1 386 179 0 0 chrX 98779756 98779823 -63820107 - AluSp SINE Alu -100 203 137 258 211 92 0 chrX 98779829 98779905 -63820025 - L1ME LINE L1 -281 5889 5807 2460 65 0 3 chrX 98780283 98780577 -63819353 + AluY SINE Alu 2 294 -17 329 223 134 9 chrX 98781015 98781127 -63818803 + Charlie8 DNA MER1_type 98 223 -2194 317 225 0 0 chrX 98781474 98781545 -63818385 - LTR33A LTR ERVL -1 522 452 22 35 0 0 chrX 98782057 98782086 -63817844 + AT_rich Low_complexity Low_complexity 1 29 0 525 130 76 0 chrX 98782966 98783058 -63816872 - MLT1A1 LTR MaLR -266 99 1 336 48 0 0 chrX 98784199 98784241 -63815689 + (TG)n Simple_repeat Simple_repeat 2 43 0 2889 324 46 24 chrX 98784614 98785099 -63814831 + HERV16 LTR ERVL 1794 2267 -3102 1854 133 0 53 chrX 98785099 98785430 -63814500 + AluSx SINE Alu 1 315 0 2889 324 46 24 chrX 98785430 98786539 -63813391 + HERV16 LTR ERVL 2267 3464 -1905 6454 29 1 0 chrX 98786544 98787337 -63812593 - L1PA3 LINE L1 -2 6153 5360 * 14558 29 0 1 chrX 98787336 98789175 -63810755 + L1P LINE L1 3547 5378 -786 914 345 19 26 chrX 98789190 98789917 -63810013 + HERV16 LTR ERVL 3456 4177 -1477 387 0 0 0 chrX 98790170 98790213 -63809717 + (CA)n Simple_repeat Simple_repeat 2 44 0 276 220 37 73 chrX 98790264 98790373 -63809557 + MIR3 SINE MIR 10 114 -94 1891 148 0 24 chrX 98791063 98791360 -63808570 - AluSg SINE Alu -20 290 1 190 356 29 0 chrX 98791628 98791732 -63808198 + MIR SINE MIR 129 235 -27 817 50 0 0 chrX 98791981 98792082 -63807848 + L1PA8 LINE L1 6066 6166 -6 1984 193 0 21 chrX 98792128 98792501 -63807429 + MLT1A1 LTR MaLR 1 365 0 1369 167 0 0 chrX 98792501 98792735 -63807195 + MLT1A1-int LTR MaLR 1 234 -1501 233 315 79 31 chrX 98792964 98793091 -63806839 - MIR SINE MIR -6 256 124 370 181 0 0 chrX 98794685 98794757 -63805173 - MLT1A2 LTR MaLR -302 72 1 450 36 0 0 chrX 98795602 98795658 -63804272 + (TC)n Simple_repeat Simple_repeat 1 56 0 515 338 7 0 chrX 98796245 98796381 -63803549 - L2 LINE L2 0 3272 3136 27516 117 13 28 chrX 98796525 98802994 -63796936 + L1PA8 LINE L1 3 6487 0 253 265 129 98 chrX 98803556 98803688 -63796242 - MIR SINE MIR -83 179 44 366 337 37 18 chrX 98803828 98803991 -63795939 - MIR3 SINE MIR -5 203 38 2426 120 83 10 chrX 98804204 98804603 -63795327 + MSTA LTR MaLR 1 428 0 610 300 6 24 chrX 98805412 98805582 -63794348 - MIR SINE MIR -80 182 16 442 310 142 7 chrX 98805584 98805739 -63794191 + MER5B DNA MER1_type 1 176 -2 2236 177 57 101 chrX 98805777 98806502 -63793428 - LTR8A LTR ERV1 0 727 35 318 318 53 20 chrX 98806710 98806861 -63793069 - L1MC4a LINE L1 -1949 5859 5704 665 217 73 68 chrX 98807456 98807924 -63792006 - LTR68 LTR ERV1 -24 686 346 273 282 0 24 chrX 98808401 98808486 -63791444 + GA-rich Low_complexity Low_complexity 2 84 0 319 287 73 37 chrX 98808767 98808784 -63791146 - MIR3 SINE MIR -10 198 183 3799 167 33 4 chrX 98808784 98809483 -63790447 + LTR62 LTR ERVK 1 719 0 319 287 73 37 chrX 98809483 98809601 -63790329 - MIR3 SINE MIR -25 183 58 1272 140 67 95 chrX 98809824 98810109 -63789821 - MSTA LTR MaLR 0 428 99 732 186 16 0 chrX 98860111 98860235 -63739695 - MER20 DNA MER1_type -93 126 1 21 0 0 0 chrX 98860386 98860407 -63739523 + AT_rich Low_complexity Low_complexity 1 21 0 486 296 116 38 chrX 98860415 98860733 -63739197 - L2 LINE L2 -787 2527 2185 270 295 135 0 chrX 98861002 98861158 -63738772 - L2 LINE L2 -23 3290 3114 529 303 16 31 chrX 98862138 98862458 -63737472 + HAL1b LINE L1 619 933 -415 284 241 35 85 chrX 98862552 98862693 -63737237 + L1MC/D LINE L1 5681 5814 -1994 225 163 0 0 chrX 98862754 98862803 -63737127 + (TG)n Simple_repeat Simple_repeat 2 50 0 2192 103 0 0 chrX 98862981 98863288 -63736642 + AluSx SINE Alu 1 307 0 257 314 0 0 chrX 98864851 98864937 -63734993 + L1M4 LINE L1 4548 4633 -1513 300 83 0 0 chrX 98865000 98865048 -63734882 + (CA)n Simple_repeat Simple_repeat 2 49 0 223 171 24 0 chrX 98865163 98865204 -63734726 + GA-rich Low_complexity Low_complexity 3 44 0 342 0 0 0 chrX 98865601 98865639 -63734291 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 222 0 0 chrX 98870290 98870353 -63729577 + CT-rich Low_complexity Low_complexity 2 64 0 269 246 0 15 chrX 98874425 98874490 -63725440 - LTR67 LTR ERVL 0 557 494 227 290 0 14 chrX 98875834 98875903 -63724027 - LTR67 LTR ERVL -4 553 486 183 129 0 0 chrX 98879076 98879107 -63720823 + (CTAGGG)n Simple_repeat Simple_repeat 4 34 0 182 298 60 0 chrX 98880320 98880404 -63719526 - L2 LINE L2 -77 3236 3148 443 282 32 13 chrX 98880889 98881045 -63718885 + L1ME LINE L1 5647 5805 -316 295 207 37 24 chrX 98881458 98881540 -63718390 + MIR SINE MIR 166 248 -14 272 375 50 8 chrX 98881964 98882204 -63717726 - L2 LINE L2 -901 2413 2164 234 224 13 40 chrX 98882619 98882695 -63717235 + CT-rich Low_complexity Low_complexity 2 75 0 4200 136 19 55 chrX 98884159 98884638 -63715292 - L1MA7 LINE L1 -3 6288 5850 698 169 0 70 chrX 98884638 98884780 -63715150 - FLAM_A SINE Alu -1 132 1 4200 136 19 55 chrX 98884780 98885129 -63714801 - L1MA7 LINE L1 -441 5850 5490 1463 74 5 0 chrX 98885208 98885410 -63714520 + L1MA1 LINE L1 6099 6301 -1 528 306 93 46 chrX 98885967 98886400 -63713530 - L1MEc LINE L1 -1800 4415 3957 1993 109 4 11 chrX 98886400 98886675 -63713255 - AluSp SINE Alu -3 310 38 528 306 93 46 chrX 98886675 98886702 -63713228 - L1MEc LINE L1 -2258 3957 3933 994 156 7 0 chrX 98886779 98886933 -63712997 + AluJb SINE Alu 156 310 -2 237 316 67 5 chrX 98887052 98887261 -63712669 - L1P LINE L1 -2390 3756 3535 1356 308 96 41 chrX 98887327 98887435 -63712495 - L1MEc LINE L1 -2685 3530 3429 209 57 29 0 chrX 98887435 98887470 -63712460 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1356 308 96 41 chrX 98887470 98887630 -63712300 - L1MEc LINE L1 -2786 3429 3279 1530 78 10 0 chrX 98887630 98887836 -63712094 - L1PA7 LINE L1 -13 6141 5934 907 37 0 0 chrX 98887836 98887943 -63711987 - U6 snRNA snRNA 0 107 1 1356 308 96 41 chrX 98887943 98888997 -63710933 - L1MEc LINE L1 -2935 3280 2168 580 289 70 4 chrX 98889240 98889468 -63710462 + MIR SINE MIR 10 252 -10 313 378 32 18 chrX 98889485 98889702 -63710228 - HAL1 LINE L1 -831 1676 1457 236 302 47 21 chrX 98889774 98889966 -63709964 - HAL1 LINE L1 -1142 1365 1169 2433 84 0 3 chrX 98890516 98890824 -63709106 - AluSq SINE Alu -2 311 5 493 274 36 32 chrX 98891456 98891708 -63708222 - L1MEc LINE L1 -4896 1309 1057 467 321 156 32 chrX 98891808 98892244 -63707686 - L1MEc LINE L1 -5629 576 87 421 307 100 65 chrX 98892813 98893103 -63706827 + L2 LINE L2 3014 3313 0 2076 147 0 6 chrX 98894209 98894523 -63705407 - AluSx SINE Alu 0 312 1 2152 106 7 7 chrX 98894630 98894923 -63705007 - AluSx SINE Alu -19 293 1 748 241 77 71 chrX 98895298 98895622 -63704308 + MLT1J2 LTR MaLR 1 326 -124 674 329 34 38 chrX 98895920 98896598 -63703332 - L1ME2 LINE L1 -170 6063 5393 1545 166 3 81 chrX 98896598 98896934 -63702996 - AluJo SINE Alu 0 312 1 674 329 34 38 chrX 98896934 98897380 -63702550 - L1ME2 LINE L1 -840 5393 4946 255 292 45 11 chrX 98897516 98897605 -63702325 + MLT1J1 LTR MaLR 71 162 -284 473 214 112 73 chrX 98897643 98897821 -63702109 + MLT1J2 LTR MaLR 266 450 0 621 279 105 69 chrX 98897940 98898698 -63701232 - L1ME2 LINE L1 -2295 3920 3190 1101 180 23 19 chrX 98898698 98898954 -63700976 - L1MB8 LINE L1 -1 6177 5921 621 279 105 69 chrX 98898954 98899001 -63700929 - L1ME2 LINE L1 -3025 3190 3146 1124 124 21 36 chrX 98899001 98899194 -63700736 + L1PA8A LINE L1 5942 6131 0 621 279 105 69 chrX 98899194 98899353 -63700577 - L1ME2 LINE L1 -3069 3146 2921 294 75 0 0 chrX 98899361 98899401 -63700529 + AluJb SINE Alu 9 48 -251 * 361 143 16 0 chrX 98899399 98899474 -63700456 - AluS SINE Alu -244 59 1 1498 157 8 4 chrX 98899597 98899859 -63700071 + AluJb SINE Alu 50 312 0 15290 31 1 1 chrX 98899864 98902452 -63697478 + L1PA5 LINE L1 3560 6149 -5 278 326 20 50 chrX 98902452 98902848 -63697082 - L1ME2 LINE L1 -3285 2930 2547 1990 125 3 10 chrX 98902859 98903147 -63696783 - AluSx SINE Alu -26 286 1 641 218 7 7 chrX 98903235 98903382 -63696548 - L1MD2 LINE L1 -18 6341 6195 639 208 71 12 chrX 98903414 98903582 -63696348 - L1MD2 LINE L1 -267 6092 5915 * 5571 133 30 6 chrX 98903571 98904584 -63695346 + L1MA4A LINE L1 5267 6303 0 998 148 6 6 chrX 98904582 98904764 -63695166 - L1MD2 LINE L1 -424 5935 5754 * 386 254 7 7 chrX 98904763 98904901 -63695029 - L1ME2 LINE L1 -3762 2453 2316 * 428 291 132 22 chrX 98904949 98905176 -63694754 - L1ME2 LINE L1 -4122 2274 2023 22 0 0 0 chrX 98905377 98905399 -63694531 + AT_rich Low_complexity Low_complexity 1 22 0 3257 198 42 10 chrX 98906969 98907686 -63692244 - Charlie1a DNA MER1_type -711 744 5 1038 122 30 10 chrX 98907869 98908066 -63691864 - L1MA8 LINE L1 -5 6286 6086 225 327 91 0 chrX 98908513 98908623 -63691307 + L2 LINE L2 2571 2690 -624 242 258 203 33 chrX 98908743 98908925 -63691005 + L2 LINE L2 2838 3050 -222 24 0 0 0 chrX 98909004 98909028 -63690902 + AT_rich Low_complexity Low_complexity 1 24 0 183 184 0 0 chrX 98911248 98911286 -63688644 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 1370 310 52 14 chrX 98916553 98917177 -63682753 + L2 LINE L2 2632 3296 -17 192 77 0 0 chrX 98917179 98917205 -63682725 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1369 219 20 86 chrX 98919695 98920184 -63679746 - LTR16A1 LTR ERVL 0 457 1 192 77 0 0 chrX 98921246 98921272 -63678658 + (TTG)n Simple_repeat Simple_repeat 2 27 0 347 237 219 9 chrX 98922744 98922858 -63677072 - MIR SINE MIR -123 139 2 322 327 123 50 chrX 98923059 98923442 -63676488 + L2 LINE L2 2125 2479 -835 1937 189 11 11 chrX 98923442 98923807 -63676123 + MLT1A1 LTR MaLR 1 365 0 322 327 123 50 chrX 98923807 98924203 -63675727 + L2 LINE L2 2479 2961 -353 324 0 0 0 chrX 98924388 98924424 -63675506 + (TG)n Simple_repeat Simple_repeat 1 36 0 313 244 45 51 chrX 98925405 98925581 -63674349 + Charlie7 DNA MER1_type 2438 2612 0 2830 196 31 27 chrX 98926644 98927357 -63672573 - L1MB7 LINE L1 -5 6179 5464 1140 228 61 26 chrX 98927359 98927784 -63672146 - L1MB7 LINE L1 -982 5164 4725 211 264 115 23 chrX 98927994 98928081 -63671849 + L2 LINE L2 3178 3272 0 1920 297 111 22 chrX 98928115 98928978 -63670952 + L2 LINE L2 415 1354 -1960 309 360 48 36 chrX 98929219 98929469 -63670461 + L1MEd LINE L1 58 310 -5809 722 248 33 0 chrX 98929661 98929903 -63670027 + L1MEd LINE L1 2318 2567 -3562 1058 263 28 50 chrX 98930156 98930552 -63669378 - L2 LINE L2 -4 3309 2923 922 294 31 20 chrX 98930637 98931030 -63668900 + LTR16A1 LTR ERVL 73 457 0 237 308 83 0 chrX 98931265 98931398 -63668532 - L1ME4a LINE L1 -28 6093 5950 23 33 0 0 chrX 98931450 98931480 -63668450 + AT_rich Low_complexity Low_complexity 1 30 0 5852 140 10 10 chrX 98932221 98933383 -63666547 + L1MA7 LINE L1 5132 6290 -1 2928 130 4 0 chrX 98933488 98933941 -63665989 + L1PA16 LINE L1 5703 6157 -9 21 0 0 0 chrX 98934069 98934090 -63665840 + AT_rich Low_complexity Low_complexity 1 21 0 530 261 107 20 chrX 98934110 98934551 -63665379 - L1ME4a LINE L1 -89 6032 5554 1324 145 5 0 chrX 98934641 98934855 -63665075 + L1PA16 LINE L1 5707 5921 -245 302 163 133 44 chrX 98934930 98935043 -63664887 - L1P LINE L1 -738 5413 5291 2576 44 0 0 chrX 98935240 98935537 -63664393 + AluY SINE Alu 1 297 -14 2082 152 7 0 chrX 98935676 98935985 -63663945 + AluSx SINE Alu 1 311 -1 566 274 84 46 chrX 98938427 98938664 -63661266 - MIR SINE MIR -5 257 12 2432 219 42 26 chrX 98938962 98939682 -63660248 - L1M4 LINE L1 -1892 4254 3524 719 306 5 5 chrX 98941132 98941341 -63658589 + MIR SINE MIR 53 261 -1 358 114 29 0 chrX 98944662 98944732 -63655198 + (TA)n Simple_repeat Simple_repeat 1 72 0 284 0 28 0 chrX 98944736 98944772 -63655158 + (GA)n Simple_repeat Simple_repeat 1 37 0 1751 150 4 4 chrX 98944772 98945046 -63654884 - AluJb SINE Alu -38 274 1 24 0 0 0 chrX 98945278 98945302 -63654628 + AT_rich Low_complexity Low_complexity 1 24 0 633 165 10 0 chrX 98945394 98945497 -63654433 + U6 snRNA snRNA 1 104 -3 192 268 36 0 chrX 99046099 99046155 -63553775 + L2 LINE L2 3215 3272 0 486 276 48 14 chrX 99046176 99046321 -63553609 - LTR41 LTR ERVL -175 598 449 687 163 62 17 chrX 99046330 99046508 -63553422 - MER53 DNA DNA 0 189 4 753 211 0 0 chrX 99046615 99046743 -63553187 + AluJb SINE Alu 155 282 -30 446 319 81 0 chrX 99046768 99046953 -63552977 - Charlie1b DNA MER1_type -280 243 44 184 57 29 29 chrX 99047292 99047327 -63552603 + (TA)n Simple_repeat Simple_repeat 2 36 0 250 202 34 22 chrX 99048394 99048483 -63551447 - L1MC4 LINE L1 -1339 6703 6614 226 211 0 28 chrX 99048489 99048560 -63551370 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 2205 149 14 3 chrX 99048566 99048921 -63551009 - Tigger3(Golem) DNA MER2_type -6 3023 2665 6409 103 66 12 chrX 99048924 99049953 -63549977 - Tigger3(Golem) DNA MER2_type -187 2842 1758 698 171 18 0 chrX 99049952 99050063 -63549867 - Tigger3(Golem) DNA MER2_type -2914 115 3 * 279 0 0 0 chrX 99050063 99050094 -63549836 + (TG)n Simple_repeat Simple_repeat 2 32 0 25 51 0 0 chrX 99050510 99050549 -63549381 + AT_rich Low_complexity Low_complexity 1 39 0 1488 192 58 20 chrX 99050860 99051152 -63548778 + AluJo SINE Alu 1 303 -9 20309 29 0 1 chrX 99052106 99055321 -63544609 + L1PA3 LINE L1 2954 6168 0 379 424 19 12 chrX 99055813 99056070 -63543860 + L1MEd LINE L1 256 514 -5605 188 122 24 0 chrX 99056275 99056316 -63543614 + CT-rich Low_complexity Low_complexity 4 45 0 639 333 76 30 chrX 99056359 99056819 -63543111 + L1MB5 LINE L1 2 482 -6060 442 274 7 0 chrX 99056828 99056974 -63542956 + L1M4 LINE L1 3033 3179 -3465 14741 207 30 49 chrX 99057088 99059352 -63540578 + L1PA15 LINE L1 2 2307 -4509 2245 96 7 0 chrX 99059352 99059645 -63540285 + AluSq SINE Alu 2 296 -17 14741 207 30 49 chrX 99059645 99061188 -63538742 + L1PA15 LINE L1 2307 3878 -2938 1599 104 0 22 chrX 99061188 99061410 -63538520 + AluSc SINE Alu 1 217 -92 657 113 57 0 chrX 99061410 99061516 -63538414 + AluSc SINE Alu 186 297 -12 14741 207 30 49 chrX 99061516 99064526 -63535404 + L1PA15 LINE L1 3876 6815 -1 430 111 7 0 chrX 99064733 99064803 -63535127 + L1P4 LINE L1 5730 5803 -348 300 300 200 0 chrX 99065276 99065406 -63534524 + MER5A DNA MER1_type 34 189 0 209 311 0 0 chrX 99065482 99065543 -63534387 + (TA)n Simple_repeat Simple_repeat 2 62 0 2328 236 28 54 chrX 99065677 99066380 -63533550 + L1MB5 LINE L1 591 1275 -5267 23 54 0 0 chrX 99066632 99066669 -63533261 + AT_rich Low_complexity Low_complexity 1 37 0 377 221 0 0 chrX 99069895 99069972 -63529958 + L1ME3A LINE L1 6089 6165 -5 703 34 0 0 chrX 99070144 99070232 -63529698 + L1PA8 LINE L1 6083 6170 -2 6910 261 42 36 chrX 99070319 99073206 -63526724 + L1MB5 LINE L1 3066 5965 -711 312 219 0 0 chrX 99073227 99073291 -63526639 - L1MC4 LINE L1 -1339 6703 6640 297 0 0 0 chrX 99073291 99073324 -63526606 + (CA)n Simple_repeat Simple_repeat 2 34 0 2434 195 41 14 chrX 99073352 99073860 -63526070 + L1MB5 LINE L1 5976 6497 -175 1768 240 34 38 chrX 99073861 99074395 -63525535 + LTR55 LTR ERV 1 532 -16 700 213 62 0 chrX 99074408 99074568 -63525362 + L1MB5 LINE L1 6503 6672 0 482 292 22 0 chrX 99074564 99074701 -63525229 + L1MD2 LINE L1 5894 6033 -326 * 593 184 48 0 chrX 99074887 99075012 -63524918 + MLT1A1 LTR MaLR 212 342 -23 4752 206 34 43 chrX 99075092 99076177 -63523753 + MLT1A1-int LTR MaLR 1 1075 -660 308 278 28 35 chrX 99076180 99076324 -63523606 - LTR27 LTR ERV1 0 636 494 2521 183 20 39 chrX 99076388 99076924 -63523006 - LTR27 LTR ERV1 -109 527 2 3310 237 6 8 chrX 99076925 99077588 -63522342 + MLT1A1-int LTR MaLR 1074 1735 0 2554 144 37 18 chrX 99077590 99078178 -63521752 + MER4E LTR ERV1 1 766 0 1029 212 113 61 chrX 99078183 99078527 -63521403 + MLT1A1 LTR MaLR 4 365 0 4786 196 85 16 chrX 99079062 99079968 -63519962 + L1M3c LINE L1 1357 2199 -5362 1799 170 143 8 chrX 99079968 99080345 -63519585 + MSTA LTR MaLR 1 428 0 4786 196 85 16 chrX 99080345 99081017 -63518913 + L1M3c LINE L1 2199 3041 -4520 8873 213 43 27 chrX 99081063 99083680 -63516250 + L1M3c LINE L1 3313 5969 -1596 8194 221 54 41 chrX 99083705 99086725 -63513205 + L1M2 LINE L1 3 3038 -4171 6780 188 11 23 chrX 99086724 99089349 -63510581 + L1PA8 LINE L1 79 2736 -3725 * 41578 46 3 0 chrX 99089352 99095488 -63504442 + L1PA4 LINE L1 1 6152 -3 17667 119 13 2 chrX 99095542 99099269 -63500661 + L1PA8 LINE L1 2726 6484 -3 463 266 0 0 chrX 99099267 99099391 -63500539 + L1M4 LINE L1 4068 4191 -1955 * 1806 208 90 7 chrX 99099388 99100136 -63499794 + L1M2 LINE L1 3022 3840 -3368 9219 181 27 91 chrX 99100137 99104409 -63495521 + L1PA12 LINE L1 1 3471 -4113 5206 74 2 6 chrX 99104409 99105215 -63494715 - L1P LINE L1 -743 5403 4623 25660 28 2 2 chrX 99105230 99109222 -63490708 - L1PA3 LINE L1 0 6155 2163 663 12 0 0 chrX 99109221 99109305 -63490625 + L1PA3 LINE L1 2071 2154 -3992 * 8994 108 1 2 chrX 99109287 99110679 -63489251 - L1P LINE L1 -1492 4654 3264 5708 51 3 0 chrX 99110679 99111413 -63488517 + L1PA7 LINE L1 5438 6174 0 9927 209 10 9 chrX 99111413 99113709 -63486221 + L1P LINE L1 2030 4327 -1819 1977 133 7 27 chrX 99113717 99114018 -63485912 - AluSq SINE Alu -17 296 2 6216 176 28 26 chrX 99114084 99114469 -63485461 - L1PB1 LINE L1 -2 6865 6482 248 62 0 0 chrX 99114469 99114517 -63485413 + LTR66 LTR ERVL 394 441 -169 6216 176 28 26 chrX 99114517 99115304 -63484626 - L1PB1 LINE L1 -385 6482 5698 1993 138 43 27 chrX 99115304 99115673 -63484257 + THE1C LTR MaLR 1 375 0 6216 176 28 26 chrX 99115673 99116993 -63482937 - L1PB1 LINE L1 -1169 5698 4384 671 147 0 31 chrX 99116967 99117096 -63482834 - L1PB1 LINE L1 -6737 126 2 * 527 198 0 8 chrX 99117109 99117235 -63482695 + L1P LINE L1 4319 4443 -1703 657 223 87 0 chrX 99117237 99117474 -63482456 + L1M4 LINE L1 3729 4011 -2135 609 127 24 40 chrX 99117530 99117656 -63482274 - MLT1C LTR MaLR -343 124 1 464 147 53 21 chrX 99118256 99118351 -63481579 + MER4A LTR ERV1 1 98 -566 1564 162 6 27 chrX 99118351 99118704 -63481226 + MER4A LTR ERV1 261 664 0 6313 90 131 113 chrX 99118706 99121855 -63478075 + MER4A-int LTR ERV1 1 3534 -3064 13045 92 46 20 chrX 99121919 99124533 -63475397 + MER4A-int LTR ERV1 3198 6596 -2 489 116 53 21 chrX 99124541 99124636 -63475294 + MER4A LTR ERV1 1 98 -566 1758 137 3 27 chrX 99124686 99124986 -63474944 + MER4A LTR ERV1 372 664 0 497 354 95 25 chrX 99125333 99125774 -63474156 + L1MC4a LINE L1 5409 5880 -1928 192 125 0 0 chrX 99127706 99127738 -63472192 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 200 384 27 0 chrX 99128608 99128720 -63471210 - MIR SINE MIR -70 192 78 215 315 101 34 chrX 99129030 99129208 -63470722 - MIR SINE MIR -26 236 47 2317 309 40 35 chrX 99129396 99130355 -63469575 + L1PA13 LINE L1 1 963 -5824 10917 240 47 21 chrX 99130429 99134528 -63465402 + L1PA13 LINE L1 1216 5432 -1365 1765 177 0 17 chrX 99136124 99136424 -63463506 + AluJo SINE Alu 1 295 -17 29 47 0 0 chrX 99136447 99136490 -63463440 + AT_rich Low_complexity Low_complexity 1 43 0 1042 275 47 7 chrX 99136507 99137083 -63462847 + L1MC5 LINE L1 5257 5899 -1909 937 234 0 0 chrX 99137093 99137294 -63462636 - MER3 DNA MER1_type -4 205 5 1249 214 66 90 chrX 99137473 99138098 -63461832 + L1MC5 LINE L1 6619 7228 -733 405 244 87 21 chrX 99138124 99138475 -63461455 + L1MC5 LINE L1 7258 7519 -442 * 1207 242 61 5 chrX 99138459 99138851 -63461079 + L1ME LINE L1 5383 5796 -374 372 291 92 7 chrX 99139025 99139166 -63460764 + MIR SINE MIR 17 169 -93 27 0 0 0 chrX 99139169 99139196 -63460734 + AT_rich Low_complexity Low_complexity 1 27 0 2081 110 0 0 chrX 99139203 99139513 -63460417 - AluSg SINE Alu 0 310 1 556 283 22 28 chrX 99139599 99139779 -63460151 + MIR SINE MIR 84 262 0 733 310 158 20 chrX 99139964 99140746 -63459184 + L2 LINE L2 2400 3297 -16 357 336 15 15 chrX 99140886 99141023 -63458907 - MER5A DNA MER1_type 0 189 53 335 261 62 39 chrX 99141749 99141879 -63458051 - MIR SINE MIR -6 256 124 911 257 14 4 chrX 99141888 99142168 -63457762 + L1MC4 LINE L1 6893 7175 -867 483 63 0 0 chrX 99142286 99142349 -63457581 + (TC)n Simple_repeat Simple_repeat 1 63 0 273 146 0 0 chrX 99142348 99142396 -63457534 + (CA)n Simple_repeat Simple_repeat 1 48 0 * 208 378 30 0 chrX 99143459 99143594 -63456336 - MIR SINE MIR -71 191 53 914 105 0 8 chrX 99143642 99143775 -63456155 - FLAM_C SINE Alu 0 133 2 1017 203 8 33 chrX 99143784 99144026 -63455904 + MER106A DNA MER1_type 1 236 0 180 179 0 0 chrX 99144127 99144166 -63455764 + (ATG)n Simple_repeat Simple_repeat 3 41 0 240 149 0 95 chrX 99144519 99144593 -63455337 - MER106B DNA MER1_type -5 1054 988 1508 222 84 48 chrX 99144774 99145297 -63454633 + MLT1F LTR MaLR 1 542 0 32 43 0 0 chrX 99145428 99145474 -63454456 + AT_rich Low_complexity Low_complexity 1 46 0 28 91 0 0 chrX 99145608 99145685 -63454245 + AT_rich Low_complexity Low_complexity 1 77 0 493 291 61 0 chrX 99145898 99146046 -63453884 + MIR SINE MIR 25 181 -81 261 66 82 0 chrX 99146214 99146264 -63453666 + (TTTA)n Simple_repeat Simple_repeat 2 59 -8 2972 31 0 0 chrX 99146264 99146613 -63453317 - L1PA3 LINE L1 -1 6154 5806 261 66 82 0 chrX 99146613 99146623 -63453307 + (TTTA)n Simple_repeat Simple_repeat 59 67 0 912 251 51 25 chrX 99146665 99147151 -63452779 + L1MDa LINE L1 2074 2572 -3968 3007 212 67 53 chrX 99147163 99147766 -63452164 - L1MDa LINE L1 -3570 2970 2377 4475 162 20 11 chrX 99147766 99148620 -63451310 - L1MA4 LINE L1 -2 6298 5437 3007 212 67 53 chrX 99148620 99149612 -63450318 - L1MDa LINE L1 -4163 2377 1348 5072 192 19 7 chrX 99149801 99150937 -63448993 - L1MC2 LINE L1 -9 6335 5185 411 304 79 40 chrX 99150946 99151440 -63448490 - L1MC2 LINE L1 -1949 4197 3685 6120 163 35 69 chrX 99151441 99152306 -63447624 - ERVL LTR ERVL -814 4950 4087 253 161 71 0 chrX 99152306 99152362 -63447568 + L1MA9 LINE L1 6253 6312 0 6120 163 35 69 chrX 99152362 99152766 -63447164 - ERVL LTR ERVL -1677 4087 3671 239 203 16 0 chrX 99152791 99152855 -63447075 + (CA)n Simple_repeat Simple_repeat 2 66 0 3813 117 15 46 chrX 99152862 99153327 -63446603 - Tigger3(Golem) DNA MER2_type 0 3029 2551 4478 160 17 21 chrX 99153327 99154200 -63445730 + L1MA5 LINE L1 5431 6300 0 3813 117 15 46 chrX 99154200 99154427 -63445503 - Tigger3(Golem) DNA MER2_type -478 2551 2357 2351 64 3 7 chrX 99154427 99154723 -63445207 - AluY SINE Alu -16 295 1 3813 117 15 46 chrX 99154723 99154750 -63445180 - Tigger3(Golem) DNA MER2_type -672 2357 2331 13144 181 23 62 chrX 99154750 99158381 -63441549 + L1P3 LINE L1 2 3521 -2940 225 65 0 0 chrX 99158381 99158412 -63441518 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 13144 181 23 62 chrX 99158412 99158990 -63440940 + L1P3 LINE L1 3521 4120 -2341 1068 81 19 0 chrX 99158988 99159149 -63440781 + L1P LINE L1 5569 5732 -755 * 1543 220 104 24 chrX 99159149 99159562 -63440368 - MLT2B1 LTR ERVL -74 446 1 838 285 101 54 chrX 99159604 99160289 -63439641 - L1MC2 LINE L1 -2527 3619 2903 213 65 0 0 chrX 99160677 99160708 -63439222 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2404 112 27 0 chrX 99160708 99161073 -63438857 - L1PB1 LINE L1 -9 6142 5768 1144 139 0 0 chrX 99161227 99161385 -63438545 - AluSq SINE Alu -22 291 134 7138 50 4 2 chrX 99161385 99162649 -63437281 - L1PA7 LINE L1 0 6154 4894 1249 97 52 0 chrX 99162649 99163019 -63436911 - L1PB1 LINE L1 -372 5779 5256 7419 122 42 9 chrX 99163030 99164432 -63435498 + L1PBa LINE L1 1456 2956 -3906 3094 220 22 25 chrX 99164431 99165299 -63434631 + L1 LINE L1 3111 3975 -2887 * 334 194 51 97 chrX 99165293 99165489 -63434441 + L1P LINE L1 4276 4462 -1684 * 1377 173 19 52 chrX 99166446 99166753 -63433177 + THE1B LTR MaLR 68 364 0 8764 101 10 29 chrX 99166753 99167050 -63432880 + THE1B-int LTR MaLR 1 302 -1278 2504 87 0 3 chrX 99167050 99167362 -63432568 + AluY SINE Alu 1 311 0 8764 101 10 29 chrX 99167362 99168417 -63431513 + THE1B-int LTR MaLR 302 1328 -252 651 62 10 0 chrX 99168418 99168514 -63431416 + THE1B-int LTR MaLR 1483 1579 -1 1980 152 39 36 chrX 99168515 99168878 -63431052 + THE1B LTR MaLR 1 364 0 6538 17 1 0 chrX 99169326 99170073 -63429857 - L1PA3 LINE L1 -3 6152 5405 3890 26 2 0 chrX 99170073 99170569 -63429361 + L1PA3 LINE L1 4903 5399 -747 2475 204 51 89 chrX 99171587 99171891 -63428039 - L1M1 LINE L1 -6842 723 409 616 14 0 0 chrX 99171891 99171962 -63427968 + L1PA5 LINE L1 6071 6141 -13 591 51 0 0 chrX 99171965 99172044 -63427886 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 2475 204 51 89 chrX 99172044 99172474 -63427456 - L1M1 LINE L1 -7158 407 13 343 246 33 61 chrX 99172593 99172764 -63427166 - L1MC/D LINE L1 -692 5429 5309 199 238 0 0 chrX 99172815 99172857 -63427073 - L2 LINE L2 -9 3304 3263 208 288 121 0 chrX 99172866 99172932 -63426998 + L2 LINE L2 2244 2317 -997 1761 171 36 0 chrX 99173030 99173311 -63426619 - AluJb SINE Alu -21 291 1 15890 207 10 11 chrX 99174240 99176130 -63423800 + L1PA15 LINE L1 1532 3421 -3395 2571 63 0 0 chrX 99176130 99176431 -63423499 + AluY SINE Alu 1 301 -10 15890 207 10 11 chrX 99176431 99179824 -63420106 + L1PA15 LINE L1 3421 6816 0 715 229 58 17 chrX 99180136 99180376 -63419554 + L1MD2 LINE L1 6108 6357 -2 206 268 0 0 chrX 99180417 99180473 -63419457 - MIR SINE MIR -17 245 190 1746 218 48 36 chrX 99180639 99181134 -63418796 - MLT1D LTR MaLR -4 501 1 2447 167 2 2 chrX 99181176 99181626 -63418304 - L1P LINE L1 -2041 4105 3656 264 250 0 0 chrX 99182462 99182542 -63417388 + (TA)n Simple_repeat Simple_repeat 2 81 0 215 234 13 0 chrX 99182610 99182687 -63417243 + GA-rich Low_complexity Low_complexity 2 79 0 335 316 117 29 chrX 99182822 99183129 -63416801 - L2 LINE L2 -873 2441 2108 318 352 62 64 chrX 99183404 99183859 -63416071 - L1M2 LINE L1 -5945 904 451 491 306 0 0 chrX 99184927 99185087 -63414843 + GA-rich Low_complexity Low_complexity 4 163 0 327 224 128 8 chrX 99185643 99185768 -63414162 + L1ME4a LINE L1 5982 6121 0 650 220 113 6 chrX 99186684 99186852 -63413078 + MER5A DNA MER1_type 1 186 -3 283 246 20 118 chrX 99186960 99187163 -63412767 - MER112 DNA MER1_type -1 259 77 208 250 75 50 chrX 99187241 99187321 -63412609 + L2 LINE L2 3226 3307 -6 310 380 121 18 chrX 99187479 99187645 -63412285 + MER5A DNA MER1_type 7 189 0 452 224 0 26 chrX 99188607 99188723 -63411207 + LTR33 LTR ERVL 6 118 -403 353 275 97 48 chrX 99188773 99189042 -63410888 + LTR33 LTR ERVL 221 502 -19 684 340 40 24 chrX 99189633 99190003 -63409927 + ERVL LTR ERVL 1374 1749 -4015 456 332 35 15 chrX 99190041 99190239 -63409691 + ERVL LTR ERVL 1791 2031 -3495 1461 337 66 14 chrX 99190326 99191027 -63408903 + ERVL LTR ERVL 3315 4051 -1603 5814 144 13 9 chrX 99191522 99192441 -63407489 - MER49 LTR ERV1 0 923 1 993 258 25 12 chrX 99192441 99192681 -63407249 + MLT1E2 LTR MaLR 382 624 -2 1330 258 55 0 chrX 99192684 99193133 -63406797 + MLT1E3-int LTR MaLR 2 602 -769 565 221 28 48 chrX 99193329 99193474 -63406456 + MLT1E2 LTR MaLR 217 358 -268 245 322 17 73 chrX 99193474 99193651 -63406279 + MLT1E3-int LTR MaLR 709 875 -496 816 275 75 70 chrX 99193816 99194202 -63405728 + MLT1E3-int LTR MaLR 984 1371 0 1567 222 47 66 chrX 99194202 99194688 -63405242 + MLT1E3 LTR MaLR 1 477 -147 1447 331 57 33 chrX 99194722 99195565 -63404365 - ERVL LTR ERVL -1808 3956 3094 1875 99 0 28 chrX 99195824 99196076 -63403854 - AluSq SINE Alu -68 245 1 234 282 56 14 chrX 99196422 99196493 -63403437 - L2 LINE L2 -17 3296 3223 728 183 21 115 chrX 99196522 99196801 -63403129 + MER112 DNA MER1_type 1 253 -3 560 250 151 7 chrX 99196916 99197068 -63402862 - MER5A DNA MER1_type 0 189 16 250 302 95 26 chrX 99197723 99197839 -63402091 - MIR SINE MIR -19 243 120 236 356 0 0 chrX 99199063 99199195 -63400735 + CT-rich Low_complexity Low_complexity 5 136 0 210 272 0 64 chrX 99200109 99200234 -63399696 + C-rich Low_complexity Low_complexity 5 121 0 24 0 0 0 chrX 99200377 99200401 -63399529 + GC_rich Low_complexity Low_complexity 1 24 0 322 315 102 20 chrX 99200804 99201001 -63398929 + L2 LINE L2 2108 2320 -994 3842 241 102 54 chrX 99201534 99202379 -63397551 - L1M4 LINE L1 -4865 1677 874 1909 133 0 7 chrX 99202379 99202687 -63397243 + AluSx SINE Alu 1 306 0 3842 241 102 54 chrX 99202687 99203439 -63396491 - L1M4 LINE L1 -5668 874 2 2993 252 78 38 chrX 99203444 99205107 -63394823 - L1MEc LINE L1 -2695 3949 2231 1694 207 89 63 chrX 99205107 99205599 -63394331 - MLT1D LTR MaLR 0 505 1 2993 252 78 38 chrX 99205599 99205912 -63394018 - L1MEc LINE L1 -4413 2231 1932 748 290 7 27 chrX 99205901 99206198 -63393732 - L1MEc LINE L1 -4915 1627 1337 * 1874 198 30 33 chrX 99206203 99206813 -63393117 + L1MB3 LINE L1 4880 5498 -680 2315 175 16 35 chrX 99206814 99207266 -63392664 + MSTB2 LTR MaLR 15 457 0 3620 178 24 13 chrX 99207269 99207939 -63391991 + L1MB3 LINE L1 5505 6181 -2 886 225 5 0 chrX 99207946 99208133 -63391797 - L1MB5 LINE L1 -32 6142 5955 1067 177 6 0 chrX 99208135 99208310 -63391620 - MLT1B LTR MaLR -2 388 213 1357 140 32 4 chrX 99208331 99208581 -63391349 - L1MA8 LINE L1 -5 6286 6030 25 65 0 0 chrX 99208675 99208721 -63391209 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chrX 99208773 99208801 -63391129 + AT_rich Low_complexity Low_complexity 1 28 0 398 255 106 35 chrX 99208841 99208982 -63390948 - MER5A DNA MER1_type -1 188 38 422 292 62 25 chrX 99209194 99209355 -63390575 - MER5B DNA MER1_type -6 172 6 249 292 0 14 chrX 99209645 99209717 -63390213 - MER5A DNA MER1_type -118 71 1 255 330 64 11 chrX 99209901 99209995 -63389935 - L2 LINE L2 -31 3241 3143 1904 141 73 24 chrX 99210706 99211047 -63388883 + MER46B DNA MER2_type 4 236 0 427 16 16 16 chrX 99211512 99211573 -63388357 + (TA)n Simple_repeat Simple_repeat 2 62 0 2113 117 7 3 chrX 99214572 99214951 -63384979 + AluSg SINE Alu 1 380 0 446 43 57 0 chrX 99215171 99215241 -63384689 + L1PA12 LINE L1 5951 6024 -144 437 83 0 0 chrX 99215241 99215299 -63384631 + L1PA13 LINE L1 6099 6158 -5 485 281 59 59 chrX 99215649 99215870 -63384060 - LTR16C LTR ERVL -167 324 104 477 0 0 0 chrX 99216008 99216061 -63383869 + (TTC)n Simple_repeat Simple_repeat 2 54 0 279 0 0 0 chrX 99216061 99216092 -63383838 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3664 53 5 7 chrX 99216092 99216529 -63383401 - L1PA7 LINE L1 -8 6146 5711 2176 144 39 36 chrX 99216787 99217149 -63382781 - THE1B LTR MaLR -1 363 1 203 137 59 20 chrX 99217154 99217205 -63382725 + T-rich Low_complexity Low_complexity 2 54 0 283 332 122 12 chrX 99217237 99217402 -63382528 - MER5A DNA MER1_type -1 188 1 488 195 83 53 chrX 99217477 99217646 -63382284 - L1MC4 LINE L1 -3 8039 7866 21 36 0 0 chrX 99217684 99217712 -63382218 + AT_rich Low_complexity Low_complexity 1 28 0 1319 318 41 5 chrX 99217799 99218240 -63381690 + LTR16B LTR ERVL 8 464 0 1036 317 48 41 chrX 99218242 99218567 -63381363 + HERV16 LTR ERVL 3 335 -4661 2118 125 16 0 chrX 99218567 99218695 -63381235 + AluSg SINE Alu 1 125 -185 180 0 0 0 chrX 99218695 99218715 -63381215 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2118 125 16 0 chrX 99218715 99218891 -63381039 + AluSg SINE Alu 125 310 0 1036 317 48 41 chrX 99218891 99219124 -63380806 + HERV16 LTR ERVL 335 565 -4431 1209 140 30 55 chrX 99219124 99219359 -63380571 - MSTA LTR MaLR 0 428 200 * 1540 184 8 4 chrX 99219343 99219604 -63380326 - MSTB LTR MaLR -164 262 1 9633 182 14 7 chrX 99219604 99221243 -63378687 - MSTB-int LTR MaLR 0 1651 1 2474 166 49 7 chrX 99221243 99221652 -63378278 - MSTB LTR MaLR 0 426 1 1748 310 53 14 chrX 99221654 99222296 -63377634 + HERV16 LTR ERVL 563 1229 -3767 3895 263 45 5 chrX 99222311 99223601 -63376329 + HERV16 LTR ERVL 1622 3009 -1987 17466 0 0 0 chrX 99223601 99225467 -63374463 + HERV16 LTR ERVL 3131 4996 0 2071 225 47 13 chrX 99225467 99225916 -63374014 + LTR16B LTR ERVL 1 464 0 1832 159 0 25 chrX 99226059 99226379 -63373551 + AluJb SINE Alu 1 312 0 16455 180 8 6 chrX 99226418 99230249 -63369681 - L1PA13 LINE L1 -2 6161 2344 249 268 24 49 chrX 99230393 99230475 -63369455 - MIR3 SINE MIR -116 92 13 2140 112 7 0 chrX 99230698 99230985 -63368945 - AluSg1 SINE Alu -20 289 1 2252 98 0 10 chrX 99231556 99231862 -63368068 + AluY SINE Alu 9 311 0 224 290 65 93 chrX 99232946 99233053 -63366877 + MIR3 SINE MIR 2 105 -103 2266 186 76 11 chrX 99233096 99233568 -63366362 - LTR22 LTR ERVK -4 505 3 1889 100 0 22 chrX 99233570 99233839 -63366091 - HERVK22 LTR ERVK 0 6837 6575 * 39848 97 5 4 chrX 99233827 99239092 -63360838 - HERVK22 LTR ERVK -1568 5269 1 2199 194 78 11 chrX 99239097 99239570 -63360360 - LTR22 LTR ERVK -4 505 1 195 205 0 0 chrX 99239582 99239621 -63360309 + L3 LINE CR1 1538 1576 -1 2847 39 3 6 chrX 99242304 99242634 -63357296 + L1PA5 LINE L1 5825 6153 -1 2085 142 26 58 chrX 99243253 99243669 -63356261 - LTR57 LTR ERVL -8 403 1 20566 59 4 171 chrX 99244296 99248969 -63350961 - L1PA6 LINE L1 -205 5949 2061 * 40900 69 5 4 chrX 99248965 99255114 -63344816 - L1PA3 LINE L1 0 6155 1 303 119 0 0 chrX 99255114 99255156 -63344774 + MSTA LTR MaLR 387 428 0 232 120 40 0 chrX 99255382 99255432 -63344498 + CT-rich Low_complexity Low_complexity 2 53 0 507 269 14 21 chrX 99255789 99255934 -63343996 - MIR SINE MIR -107 155 12 2332 137 46 3 chrX 99256646 99256996 -63342934 + MLT1A1 LTR MaLR 1 365 0 597 279 61 15 chrX 99257596 99257793 -63342137 - MIR SINE MIR -44 218 13 27 49 0 0 chrX 99257997 99258038 -63341892 + AT_rich Low_complexity Low_complexity 1 41 0 5610 202 54 48 chrX 99258894 99260028 -63339902 - L1MB7 LINE L1 -19 6663 5537 1688 194 19 33 chrX 99260028 99260394 -63339536 + MLT1A1 LTR MaLR 1 361 -4 5610 202 54 48 chrX 99260394 99260810 -63339120 - L1MB7 LINE L1 -1145 5537 5125 1938 137 153 16 chrX 99260810 99261183 -63338747 + MSTA LTR MaLR 5 428 0 5610 202 54 48 chrX 99261183 99262356 -63337574 - L1MB7 LINE L1 -1557 5125 3929 1134 281 29 64 chrX 99262367 99262828 -63337102 - L1M3de LINE L1 -5198 1455 331 2181 164 7 34 chrX 99262855 99263412 -63336518 - L1M1 LINE L1 -743 5403 4954 4346 233 19 20 chrX 99263412 99264468 -63335462 - L1MB7 LINE L1 -5487 1055 1 1692 185 17 0 chrX 99264792 99265089 -63334841 + AluJb SINE Alu 1 302 -10 1346 192 4 48 chrX 99265379 99265629 -63334301 - MER8 DNA MER2_type 0 239 1 3019 132 65 4 chrX 99266196 99266675 -63333255 - MER89 LTR ERV1 -2 557 50 507 275 95 80 chrX 99266837 99267302 -63332628 - L2 LINE L2 0 3313 2842 726 212 8 8 chrX 99267578 99267710 -63332220 + FLAM_A SINE Alu 1 132 -1 2482 193 30 65 chrX 99267797 99268366 -63331564 + MLT2B3 LTR ERVL 4 552 -2 251 296 30 83 chrX 99268504 99268673 -63331257 + MIR3 SINE MIR 44 203 -5 3278 121 6 12 chrX 99268949 99269633 -63330297 - L1M1 LINE L1 -600 7123 6445 6068 194 11 13 chrX 99269641 99270898 -63329032 - L1M1 LINE L1 -2034 5531 4277 2595 188 24 29 chrX 99270897 99271441 -63328489 - L1M1 LINE L1 -7016 549 9 * 196 213 21 0 chrX 99272365 99272412 -63327518 - MIR3 SINE MIR -32 176 129 211 269 0 128 chrX 99273332 99273488 -63326442 + MIR3 SINE MIR 1 136 -72 21 0 0 0 chrX 99275130 99275151 -63324779 + AT_rich Low_complexity Low_complexity 1 21 0 819 146 236 50 chrX 99276199 99276341 -63323589 + MER46A DNA MER2_type 1 115 -2616 1858 138 0 28 chrX 99276341 99276656 -63323274 + AluJb SINE Alu 1 307 0 819 146 236 50 chrX 99276656 99276711 -63323219 + MER46A DNA MER2_type 115 236 0 386 342 153 29 chrX 99277666 99278393 -63321537 - L2 LINE L2 -3 3269 2453 250 291 0 0 chrX 99278524 99278603 -63321327 - L1MC4 LINE L1 -1350 6692 6614 2499 78 0 0 chrX 99278612 99278921 -63321009 - AluSc SINE Alu 0 309 1 305 259 0 25 chrX 99278984 99279065 -63320865 - L2 LINE L2 -926 2388 2310 277 244 24 49 chrX 99279156 99279238 -63320692 - MIR3 SINE MIR -116 92 13 180 380 0 0 chrX 99280896 99280946 -63318984 - MIR SINE MIR -67 141 92 293 318 155 7 chrX 99281088 99281236 -63318694 + MIR3 SINE MIR 39 208 0 2368 99 0 10 chrX 99283402 99283715 -63316215 - AluSg SINE Alu 0 310 1 2296 114 31 26 chrX 99284882 99285269 -63314661 - LTR57 LTR ERVL -8 403 15 304 224 71 0 chrX 99286925 99287010 -63312920 - MIR SINE MIR 0 262 172 209 176 0 0 chrX 99287082 99287116 -63312814 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 209 239 65 0 chrX 99287135 99287181 -63312749 + MIR SINE MIR 94 142 -66 191 37 0 37 chrX 99287344 99287371 -63312559 + MIR3 SINE MIR 151 176 -32 1724 189 67 89 chrX 99287386 99287894 -63312036 - MLT1D LTR MaLR -8 497 1 1471 277 90 21 chrX 99287894 99288363 -63311567 - MLT1D-int LTR MaLR 0 1371 871 44846 41 1 0 chrX 99288406 99294541 -63305389 - L1PA3 LINE L1 -2 6153 14 618 124 0 21 chrX 99294541 99294638 -63305292 - PABL_A LTR ERV1 -565 95 1 1718 206 58 13 chrX 99294772 99295151 -63304779 + MSTD LTR MaLR 1 396 0 1457 192 120 31 chrX 99296772 99296819 -63303111 - MSTD LTR MaLR 0 396 355 1896 146 61 28 chrX 99296819 99297182 -63302748 - THE1C LTR MaLR 0 375 1 1457 192 120 31 chrX 99297182 99297493 -63302437 - MSTD LTR MaLR -41 355 6 4882 241 47 44 chrX 99297502 99298842 -63301088 - MSTD-int LTR MaLR 0 1735 392 9690 140 22 7 chrX 99298858 99301423 -63298507 - L1MA2 LINE L1 0 6304 3697 24 0 0 0 chrX 99301832 99301856 -63298074 + AT_rich Low_complexity Low_complexity 1 24 0 811 287 56 56 chrX 99302110 99302667 -63297263 + L1MDa LINE L1 1 557 -5983 455 189 0 0 chrX 99303250 99303324 -63296606 - Tigger3(Golem) DNA MER2_type -2955 74 1 345 332 40 13 chrX 99303325 99303492 -63296438 - MIR SINE MIR -59 203 34 278 303 151 40 chrX 99303648 99303800 -63296130 - L2 LINE L2 -273 3040 2872 364 234 102 89 chrX 99303808 99304043 -63295887 - L2 LINE L2 0 3313 3076 2228 94 3 3 chrX 99304367 99304721 -63295209 + AluSc SINE Alu 1 354 0 209 308 0 26 chrX 99304820 99304937 -63294993 + CT-rich Low_complexity Low_complexity 2 115 0 2335 82 10 0 chrX 99305218 99305523 -63294407 - AluSp SINE Alu -5 308 1 8355 227 54 72 chrX 99306094 99306571 -63293359 - L1MC4a LINE L1 0 7808 7324 2367 212 27 18 chrX 99306571 99307085 -63292845 - LTR53 LTR ERVL 0 519 1 8355 227 54 72 chrX 99307085 99307500 -63292430 - L1MC4a LINE L1 -484 7324 6903 849 151 14 27 chrX 99307500 99307646 -63292284 + L1PA11 LINE L1 6028 6171 -3 8355 227 54 72 chrX 99307646 99308869 -63291061 - L1MC4a LINE L1 -905 6903 5659 1620 137 3 93 chrX 99308869 99309190 -63290740 - AluJo SINE Alu -20 292 1 8355 227 54 72 chrX 99309190 99309891 -63290039 - L1MC4a LINE L1 -2149 5659 5055 2175 98 0 13 chrX 99309891 99310222 -63289708 - AluSx SINE Alu 0 327 1 8355 227 54 72 chrX 99310222 99310747 -63289183 - L1MC4a LINE L1 -2753 5055 4522 2035 131 10 93 chrX 99310755 99311070 -63288860 - MLT1A1 LTR MaLR -5 360 81 482 36 0 0 chrX 99311070 99311126 -63288804 + L1PA3 LINE L1 6097 6152 -3 2035 131 10 93 chrX 99311126 99311198 -63288732 - MLT1A1 LTR MaLR -284 81 5 479 276 62 31 chrX 99311210 99311533 -63288397 - L1MC4a LINE L1 -1632 4514 4182 2437 178 40 110 chrX 99311549 99312795 -63287135 - L1MA9 LINE L1 -38 6274 5153 999 281 85 56 chrX 99312839 99313768 -63286162 - L1M4 LINE L1 -2008 4138 3238 279 0 0 0 chrX 99313768 99313799 -63286131 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1475 175 0 45 chrX 99313804 99314096 -63285834 - AluJo SINE Alu -32 280 2 999 281 85 56 chrX 99314096 99314566 -63285364 - L1M4 LINE L1 -2911 3235 2676 205 213 0 33 chrX 99314990 99315051 -63284879 + CT-rich Low_complexity Low_complexity 1 59 0 291 207 35 0 chrX 99315202 99315260 -63284670 - MER58 DNA MER1_type -5 2415 2356 1758 153 3 3 chrX 99315903 99316209 -63283721 - AluJb SINE Alu 0 306 1 437 125 11 0 chrX 99316708 99316796 -63283134 + (CA)n Simple_repeat Simple_repeat 2 90 0 249 33 0 0 chrX 99318533 99318563 -63281367 + (CAGT)n Simple_repeat Simple_repeat 1 30 0 185 284 46 101 chrX 99318563 99318666 -63281264 - L2 LINE L2 -34 3238 3142 284 319 26 0 chrX 99318927 99319040 -63280890 - MIR SINE MIR -75 187 72 346 339 0 0 chrX 99319952 99320082 -63279848 + MLT1K LTR MaLR 141 270 -318 228 340 104 0 chrX 99320300 99320406 -63279524 - L2 LINE L2 -6 3266 3150 369 0 0 0 chrX 99320486 99320527 -63279403 + (T)n Simple_repeat Simple_repeat 1 41 0 224 130 0 43 chrX 99320533 99320579 -63279351 + L2 LINE L2 2855 2898 -374 219 245 0 19 chrX 99320596 99320649 -63279281 + L2 LINE L2 3008 3059 -213 904 204 0 7 chrX 99320776 99320969 -63278961 + MER33 DNA MER1_type 1 185 -99 772 286 19 23 chrX 99321054 99321313 -63278617 + L1ME1 LINE L1 4082 4339 -1807 1768 250 101 45 chrX 99321313 99322072 -63277858 + Tigger6a DNA MER2_type 5 806 -277 22 56 0 0 chrX 99322365 99322401 -63277529 + AT_rich Low_complexity Low_complexity 1 36 0 2078 100 0 52 chrX 99322445 99322754 -63277176 + AluSx SINE Alu 1 293 -19 31752 34 0 1 chrX 99322827 99327385 -63272545 + L1PA4 LINE L1 1600 6153 -2 6572 104 1 36 chrX 99327476 99328897 -63271033 - L1PA10 LINE L1 0 6168 4763 2027 254 70 18 chrX 99328897 99329524 -63270406 + L1ME1 LINE L1 5484 6143 -23 206 359 30 30 chrX 99329988 99330119 -63269811 - L2 LINE L2 -5 3267 3137 2547 182 14 23 chrX 99330123 99330639 -63269291 + MER74A LTR ERVL 3 513 -45 825 330 94 8 chrX 99330676 99331028 -63268902 + LTR16A LTR ERVL 25 406 -44 1620 271 84 7 chrX 99331038 99331595 -63268335 + HERV16 LTR ERVL 200 799 -4197 1149 296 47 28 chrX 99331885 99332378 -63267552 + HERV16 LTR ERVL 1716 2217 -2779 969 23 0 23 chrX 99332407 99332538 -63267392 + (TTC)n Simple_repeat Simple_repeat 3 130 0 20633 156 11 22 chrX 99332538 99339695 -63260235 - L1MA1 LINE L1 -109 7612 535 2522 51 0 29 chrX 99339695 99340008 -63259922 - AluY SINE Alu -7 304 1 20633 156 11 22 chrX 99340008 99340344 -63259586 - L1MA1 LINE L1 -7186 535 197 9739 234 12 58 chrX 99340339 99344768 -63255162 - L1PA13 LINE L1 -2061 4736 2 * 596 189 20 24 chrX 99344774 99344935 -63254995 - L1M1 LINE L1 -4612 1770 1536 4292 232 35 9 chrX 99344970 99346028 -63253902 + L1 LINE L1 3472 4556 -1590 6139 110 4 38 chrX 99346078 99347173 -63252757 - L1PB2 LINE L1 -1 6150 5082 * 6256 38 0 0 chrX 99347167 99347912 -63252018 - L1PA4 LINE L1 -849 5297 4553 1376 18 18 0 chrX 99347912 99348078 -63251852 + L1PA4 LINE L1 5304 5472 -683 6004 18 7 0 chrX 99398078 99398758 -63201172 + L1PA4 LINE L1 5469 6153 -2 3074 187 9 17 chrX 99398764 99399428 -63200502 - L1PB2 LINE L1 -1056 5090 4432 734 293 108 71 chrX 99399470 99400876 -63199054 - L1M4 LINE L1 -1160 4986 3632 1008 137 44 16 chrX 99400876 99401059 -63198871 - L1PA16 LINE L1 -1 6165 5978 734 293 108 71 chrX 99401059 99401397 -63198533 - L1M4 LINE L1 -2514 3632 3308 2133 92 0 11 chrX 99401397 99401419 -63198511 - AluSg SINE Alu -8 302 281 414 0 0 0 chrX 99401419 99401465 -63198465 + (TA)n Simple_repeat Simple_repeat 2 47 0 220 27 54 0 chrX 99401464 99401501 -63198429 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 * 2133 92 0 11 chrX 99401465 99401759 -63198171 - AluSg SINE Alu -29 281 25 734 293 108 71 chrX 99401759 99401863 -63198067 - L1M4 LINE L1 -2838 3308 3070 1439 18 12 0 chrX 99401931 99402100 -63197830 + L1PA4 LINE L1 5985 6155 0 1671 218 60 25 chrX 99403889 99404335 -63195595 + MLT1C LTR MaLR 6 467 0 5667 197 39 59 chrX 99404335 99405733 -63194197 + MLT1C-int LTR MaLR 1 1371 0 1923 188 36 47 chrX 99405738 99406205 -63193725 + MLT1C LTR MaLR 6 467 0 207 0 0 0 chrX 99406362 99406385 -63193545 + (A)n Simple_repeat Simple_repeat 1 23 0 1339 143 28 8 chrX 99406826 99407077 -63192853 - L1MA7 LINE L1 -1 6290 6035 339 248 46 26 chrX 99407475 99407628 -63192302 + L1MB7 LINE L1 2334 2489 -3657 231 333 12 0 chrX 99407748 99407832 -63192098 - L2 LINE L2 -2569 745 661 292 291 41 61 chrX 99408108 99408304 -63191626 - MLT1L LTR MaLR -416 199 8 2276 78 10 10 chrX 99408769 99409065 -63190865 + AluSc SINE Alu 1 296 -13 286 77 0 0 chrX 99411156 99411195 -63188735 + 5S rRNA rRNA 1 39 -82 461 237 36 14 chrX 99411984 99412123 -63187807 + MIR SINE MIR 32 173 -89 2599 46 7 7 chrX 99412404 99412710 -63187220 + AluSq SINE Alu 1 306 -7 231 124 82 10 chrX 99413717 99413814 -63186116 + (GGGTG)n Simple_repeat Simple_repeat 3 106 0 207 100 0 0 chrX 99413908 99413938 -63185992 + (TG)n Simple_repeat Simple_repeat 1 30 0 504 289 53 53 chrX 99415602 99415714 -63184216 - MIR SINE MIR -18 244 133 726 300 14 56 chrX 99415714 99416141 -63183789 - MLT1I LTR MaLR 0 409 1 504 289 53 53 chrX 99416141 99416253 -63183677 - MIR SINE MIR -128 134 20 234 202 101 50 chrX 99416758 99416877 -63183053 + L1MB7 LINE L1 3331 3455 -2691 649 299 27 67 chrX 99416947 99417398 -63182532 + L1MB7 LINE L1 3719 4151 -1995 252 59 0 0 chrX 99417796 99417830 -63182100 + (TC)n Simple_repeat Simple_repeat 2 35 0 363 89 0 0 chrX 99417830 99417886 -63182044 + (CA)n Simple_repeat Simple_repeat 1 56 0 477 287 36 26 chrX 99418099 99418294 -63181636 + LTR67 LTR ERVL 359 555 -2 554 215 52 23 chrX 99418530 99418702 -63181228 - MER5B DNA MER1_type 0 178 2 27 0 0 0 chrX 99418738 99418765 -63181165 + AT_rich Low_complexity Low_complexity 1 27 0 290 282 0 0 chrX 99419218 99419289 -63180641 + HAL1 LINE L1 12 82 -2425 * 892 227 135 25 chrX 99419287 99419569 -63180361 + L1ME1 LINE L1 5763 6075 -91 419 290 50 92 chrX 99420391 99420653 -63179277 - MIR SINE MIR 0 262 12 241 216 0 0 chrX 99422269 99422320 -63177610 - L2 LINE L2 0 3313 3263 310 245 14 61 chrX 99423324 99423413 -63176517 - L1MC5 LINE L1 -911 7050 6969 195 42 0 0 chrX 99423413 99423437 -63176493 + (TTG)n Simple_repeat Simple_repeat 1 24 0 310 245 14 61 chrX 99423437 99423494 -63176436 - L1MC5 LINE L1 -992 6969 6911 1220 186 28 35 chrX 99423495 99423813 -63176117 - L2 LINE L2 -571 2743 2428 369 246 57 105 chrX 99424042 99424270 -63175660 - L1M4 LINE L1 -3381 2765 2549 218 32 32 0 chrX 99426300 99426331 -63173599 + (CCA)n Simple_repeat Simple_repeat 1 32 0 257 0 30 0 chrX 99427331 99427364 -63172566 + (TC)n Simple_repeat Simple_repeat 2 35 0 208 159 68 0 chrX 99428780 99428824 -63171106 + GA-rich Low_complexity Low_complexity 6 52 0 441 179 192 33 chrX 99430524 99430675 -63169255 + MIR SINE MIR 17 191 -71 601 289 32 0 chrX 99431111 99431298 -63168632 + MIR SINE MIR 2 194 -68 4688 210 30 15 chrX 99431890 99433816 -63166114 + L1MB7 LINE L1 4211 6168 -16 198 0 0 0 chrX 99435903 99435925 -63164005 + (CAT)n Simple_repeat Simple_repeat 1 22 0 604 102 0 127 chrX 99436574 99436692 -63163238 - FLAM_A SINE Alu -18 124 22 1508 154 88 66 chrX 99437217 99437542 -63162388 + MLT2D LTR ERVL 43 378 -36 353 39 0 19 chrX 99437542 99437594 -63162336 + (CA)n Simple_repeat Simple_repeat 1 51 0 1508 154 88 66 chrX 99437594 99437632 -63162298 + MLT2D LTR ERVL 378 414 0 237 178 0 0 chrX 99437632 99437680 -63162250 - MER5A DNA MER1_type -138 51 4 255 346 15 15 chrX 99437739 99437872 -63162058 + L1ME LINE L1 5705 5837 -333 23 0 0 0 chrX 99438466 99438489 -63161441 + AT_rich Low_complexity Low_complexity 1 23 0 1738 133 119 100 chrX 99438840 99439260 -63160670 + MSTA LTR MaLR 1 428 0 205 390 7 7 chrX 99439261 99439397 -63160533 - MIR SINE MIR -41 221 86 283 255 149 19 chrX 99439879 99440040 -63159890 - MIR SINE MIR -25 237 56 2651 224 51 46 chrX 99640589 99641536 -62958394 + L1M3b LINE L1 1142 2083 -4299 2470 63 7 0 chrX 99641536 99641838 -62958092 + AluSp SINE Alu 1 304 -9 2651 224 51 46 chrX 99641838 99642872 -62957058 + L1M3b LINE L1 2083 3186 -3196 12742 127 21 15 chrX 99642874 99644689 -62955241 + Tigger1 DNA MER2_type 1 1896 -522 2379 71 0 3 chrX 99644689 99644984 -62954946 + AluY SINE Alu 1 294 -17 12742 127 21 15 chrX 99644984 99645383 -62954547 + Tigger1 DNA MER2_type 1896 2291 -127 1231 174 4 42 chrX 99645380 99645495 -62954435 - MER54B LTR ERVL -566 227 124 * 2456 97 3 0 chrX 99645495 99645806 -62954124 + AluSx SINE Alu 1 312 0 1231 174 4 42 chrX 99645806 99645926 -62954004 - MER54B LTR ERVL -669 124 1 2845 241 46 19 chrX 99645927 99647738 -62952192 + L1ME2 LINE L1 4295 6155 -9 407 330 58 35 chrX 99647824 99648280 -62951650 + MLT1K LTR MaLR 12 565 -23 24 32 0 0 chrX 99648486 99648517 -62951413 + AT_rich Low_complexity Low_complexity 1 31 0 622 251 38 90 chrX 99648584 99648851 -62951079 + MER77 LTR ERV1 62 314 -291 1170 125 0 0 chrX 99648851 99649019 -62950911 + AluSg/x SINE Alu 127 294 -18 2422 63 3 13 chrX 99649021 99649323 -62950607 + AluSq SINE Alu 1 299 -14 782 218 124 23 chrX 99649325 99649615 -62950315 + MER77 LTR ERV1 309 599 -6 805 173 11 50 chrX 99649836 99650015 -62949915 + MER69 DNA AcHobo 1 172 -1054 371 196 120 0 chrX 99650018 99650110 -62949820 + MER69 DNA AcHobo 2424 2526 0 351 0 0 0 chrX 99650608 99650647 -62949283 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 396 0 0 0 chrX 99650646 99650690 -62949240 + (TA)n Simple_repeat Simple_repeat 1 44 0 1761 143 14 7 chrX 99650714 99650994 -62948936 - AluSx SINE Alu -30 282 1 258 56 0 0 chrX 99651226 99651262 -62948668 + (CA)n Simple_repeat Simple_repeat 2 37 0 233 75 25 0 chrX 99651624 99651664 -62948266 + (TC)n Simple_repeat Simple_repeat 1 41 0 355 347 70 26 chrX 99652446 99652832 -62947098 - MLT1K LTR MaLR -7 581 179 505 339 55 14 chrX 99652873 99653165 -62946765 - MER102b DNA MER1_type -9 332 29 319 273 0 50 chrX 99653722 99653861 -62946069 - MLT1K LTR MaLR -11 577 446 344 313 42 0 chrX 99654004 99654100 -62945830 - MLT1K LTR MaLR -348 240 141 1305 25 0 6 chrX 99654238 99654433 -62945497 + L1PA2 LINE L1 5998 6155 0 766 69 35 0 chrX 99656030 99656146 -62943784 + (TTCC)n Simple_repeat Simple_repeat 4 123 0 1149 146 19 15 chrX 99657304 99657509 -62942421 - AluSc SINE Alu -9 300 95 614 178 12 35 chrX 99657615 99657784 -62942146 + CT-rich Low_complexity Low_complexity 3 167 0 337 333 67 33 chrX 99657977 99658157 -62941773 - MER5A DNA MER1_type -3 186 1 1001 228 64 10 chrX 99658330 99658642 -62941288 - MER113 DNA MER1_type? -158 363 35 767 254 11 58 chrX 99659122 99659205 -62940725 + MER34 LTR ERV1 1 86 -456 4354 144 50 0 chrX 99659205 99659891 -62940039 + MER72 LTR ERV1 1 720 -2 767 254 11 58 chrX 99659891 99660082 -62939848 + MER34 LTR ERV1 86 262 -280 39102 66 8 3 chrX 99660096 99666216 -62933714 - L1PA5 LINE L1 -5 6149 1 2410 153 57 0 chrX 99666262 99666667 -62933263 - MSTA LTR MaLR 0 428 1 285 247 82 14 chrX 99666685 99666831 -62933099 + MER34 LTR ERV1 339 494 -48 329 278 0 46 chrX 99666862 99666970 -62932960 - MIR SINE MIR -7 255 153 223 235 296 20 chrX 99666975 99667073 -62932857 - MIR SINE MIR -11 251 127 585 261 72 7 chrX 99667118 99667256 -62932674 - MIR SINE MIR -115 147 1 270 81 0 0 chrX 99667879 99667916 -62932014 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 506 228 36 16 chrX 99669837 99670030 -62929900 - L1MC5 LINE L1 -26 7935 7739 1799 94 4 0 chrX 99670522 99670756 -62929174 - AluSp SINE Alu -78 235 1 1244 163 9 4 chrX 99671082 99671118 -62928812 - MSTD LTR MaLR -167 229 195 2368 101 3 0 chrX 99671118 99671426 -62928504 - AluSg SINE Alu -1 309 1 1244 163 9 4 chrX 99671426 99671616 -62928314 - MSTD LTR MaLR -201 195 2 214 241 0 37 chrX 99671697 99671751 -62928179 + (TATG)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chrX 99672044 99672067 -62927863 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1732 121 4 0 chrX 99672069 99672308 -62927622 - AluSq SINE Alu -30 283 44 204 97 0 0 chrX 99672309 99672340 -62927590 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1455 145 0 0 chrX 99672680 99672908 -62927022 + L1PB4 LINE L1 5924 6151 -5 2311 115 0 0 chrX 99673059 99673372 -62926558 - AluSq SINE Alu 0 313 1 217 340 0 21 chrX 99673397 99673491 -62926439 + MIR3 SINE MIR 90 181 -27 2117 115 0 32 chrX 99674027 99674340 -62925590 + AluSc SINE Alu 1 303 -6 1090 254 97 42 chrX 99675548 99676024 -62923906 + LTR26 LTR ERV1 102 603 0 206 156 22 0 chrX 99677565 99677610 -62922320 + GA-rich Low_complexity Low_complexity 1 46 0 218 222 0 19 chrX 99678715 99678769 -62921161 - MIR SINE MIR -51 211 159 4253 157 48 5 chrX 99678778 99679561 -62920369 - LTR1B LTR ERV1 -9 817 1 1103 237 102 52 chrX 99679564 99680120 -62919810 - MER34C LTR ERV1 -1 584 1 220 315 9 63 chrX 99680137 99680248 -62919682 - MIR SINE MIR -64 144 40 1262 217 17 54 chrX 99680249 99680599 -62919331 + MLT1D LTR MaLR 5 341 -164 1508 203 61 3 chrX 99680599 99680958 -62918972 - MLT1D LTR MaLR 0 505 126 726 184 40 7 chrX 99680954 99681106 -62918824 + MLT1D LTR MaLR 349 505 0 * 351 280 127 17 chrX 99682423 99682541 -62917389 - MIR SINE MIR -62 146 16 3067 240 85 44 chrX 99682910 99683048 -62916882 - L1MC4 LINE L1 0 8042 7911 222 62 0 0 chrX 99683048 99683080 -62916850 + (TA)n Simple_repeat Simple_repeat 2 33 0 3067 240 85 44 chrX 99683080 99684359 -62915571 - L1MC4 LINE L1 -131 7911 6413 424 298 17 10 chrX 99685139 99685278 -62914652 - MIR3 SINE MIR -5 203 63 269 250 25 25 chrX 99685278 99685358 -62914572 + L3 LINE CR1 1488 1567 -10 693 286 97 36 chrX 99686253 99686582 -62913348 - L2 LINE L2 -5 3267 2919 337 303 0 41 chrX 99686664 99686786 -62913144 + L2 LINE L2 3191 3307 -6 540 228 9 128 chrX 99686823 99687042 -62912888 - MIR SINE MIR -28 234 42 1514 325 48 44 chrX 99687155 99687979 -62911951 - L2 LINE L2 -624 2690 1863 758 276 90 34 chrX 99688852 99689297 -62910633 - L1MEc LINE L1 -4134 2262 1793 1155 303 122 23 chrX 99689324 99690060 -62909870 - L2 LINE L2 -1216 2098 1290 1064 184 28 56 chrX 99690214 99690482 -62909448 + MIR SINE MIR 2 262 0 311 330 0 0 chrX 99690867 99690955 -62908975 - L3 LINE CR1 -3 1574 1487 2329 94 3 3 chrX 99692263 99692561 -62907369 - AluSq SINE Alu -15 298 1 455 178 8 68 chrX 99692927 99693045 -62906885 - L1MC4 LINE L1 0 8042 7932 2027 210 8 36 chrX 99693111 99693544 -62906386 - L1MC4 LINE L1 -133 7909 7490 2509 158 70 0 chrX 99693544 99693942 -62905988 + MSTB LTR MaLR 1 426 0 2027 210 8 36 chrX 99693942 99694013 -62905917 - L1MC4 LINE L1 -552 7490 7419 1967 206 35 51 chrX 99694009 99694495 -62905435 - L1MC4 LINE L1 -890 7152 6675 * 267 31 0 0 chrX 99694510 99694542 -62905388 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 1649 179 16 77 chrX 99694542 99694921 -62905009 - MLT1A1 LTR MaLR -5 360 5 525 32 0 0 chrX 99694923 99694986 -62904944 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2645 188 33 48 chrX 99695019 99695689 -62904241 - L1MC4a LINE L1 -1210 6598 5939 268 178 0 0 chrX 99697372 99697417 -62902513 - L2 LINE L2 0 3313 3269 339 341 45 69 chrX 99697685 99697931 -62901999 - L2 LINE L2 -5 3267 3028 248 274 0 0 chrX 99697943 99697994 -62901936 + L2 LINE L2 3189 3239 -33 285 336 71 9 chrX 99698071 99698184 -62901746 + L2 LINE L2 2945 3064 -208 1531 302 128 23 chrX 99698269 99699038 -62900892 + L2 LINE L2 2201 3050 -263 1862 148 70 50 chrX 99699060 99699417 -62900513 - MLT1A1 LTR MaLR -1 364 1 195 242 76 15 chrX 99699936 99700002 -62899928 + L2 LINE L2 2567 2636 -678 542 300 44 74 chrX 99700047 99700609 -62899321 + L2 LINE L2 2733 3269 -3 21 0 0 0 chrX 99700813 99700834 -62899096 + AT_rich Low_complexity Low_complexity 1 21 0 710 301 23 12 chrX 99700845 99701101 -62898829 - MIR SINE MIR -3 259 1 970 234 144 16 chrX 99703154 99703590 -62896340 + L1ME4a LINE L1 5582 6073 -48 2607 315 53 55 chrX 99704375 99709104 -62890826 + PABL_B-int LTR ERV1 596 5130 -1855 400 316 7 7 chrX 99710731 99710883 -62889047 + PABL_B-int LTR ERV1 8023 8174 -452 310 219 20 0 chrX 99711156 99711233 -62888697 + PABL_B-int LTR ERV1 6459 6529 0 455 243 65 49 chrX 99711655 99711845 -62888085 + MIR SINE MIR 56 248 -14 217 260 144 29 chrX 99712442 99712546 -62887384 - L2 LINE L2 -2 3311 3196 384 22 0 0 chrX 99712850 99712895 -62887035 + (CAA)n Simple_repeat Simple_repeat 1 45 0 660 246 41 99 chrX 99713474 99713794 -62886136 + L2 LINE L2 2779 3083 -189 191 217 17 33 chrX 99713799 99713859 -62886071 - L2 LINE L2 -367 2905 2847 1643 131 67 73 chrX 99713863 99714206 -62885724 - THE1C LTR MaLR -34 341 1 807 297 71 32 chrX 99714206 99714670 -62885260 - L2 LINE L2 -481 2833 2352 325 274 12 0 chrX 99714765 99714849 -62885081 - MIR SINE MIR 0 262 178 30 0 0 0 chrX 99715346 99715376 -62884554 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chrX 99715781 99715801 -62884129 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 233 301 120 71 chrX 99716945 99717128 -62882802 + L2 LINE L2 3073 3264 -8 185 296 25 25 chrX 99717523 99717604 -62882326 + L2 LINE L2 3004 3084 -188 180 0 0 0 chrX 99718294 99718314 -62881616 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 542 85 0 12 chrX 99718316 99718398 -62881532 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 2000 143 3 13 chrX 99718408 99718723 -62881207 - AluSx SINE Alu 0 312 1 2402 144 58 26 chrX 99719225 99719642 -62880288 - MSTB1 LTR MaLR -2 430 1 204 40 0 0 chrX 99719943 99719968 -62879962 + (CAA)n Simple_repeat Simple_repeat 2 26 0 195 167 0 0 chrX 99720594 99720636 -62879294 + (TG)n Simple_repeat Simple_repeat 2 43 0 646 287 15 31 chrX 99722235 99722430 -62877500 + MIR3 SINE MIR 17 208 0 21 0 0 0 chrX 99723494 99723515 -62876415 + AT_rich Low_complexity Low_complexity 1 21 0 292 311 111 33 chrX 99723765 99723945 -62875985 - L2 LINE L2 -6 3266 3073 339 113 0 0 chrX 99725200 99725253 -62874677 + (CAG)n Simple_repeat Simple_repeat 1 53 0 2635 221 59 48 chrX 99727547 99727722 -62872208 + MER82 DNA MER2_type 1 173 -480 2187 115 3 0 chrX 99727722 99728046 -62871884 + AluSx SINE Alu 1 312 0 2635 221 59 48 chrX 99728046 99728516 -62871414 + MER82 DNA MER2_type 173 653 0 30 0 0 0 chrX 99728900 99728930 -62871000 + AT_rich Low_complexity Low_complexity 1 30 0 702 264 15 25 chrX 99730387 99730588 -62869342 - MIR SINE MIR -2 260 62 21 0 0 0 chrX 99731369 99731390 -62868540 + AT_rich Low_complexity Low_complexity 1 21 0 246 260 52 0 chrX 99731415 99731492 -62868438 + (CATA)n Simple_repeat Simple_repeat 4 84 0 242 187 99 99 chrX 99731750 99731841 -62868089 - L3 LINE CR1 -2 1575 1485 320 310 51 107 chrX 99731899 99732442 -62867488 - L2 LINE L2 0 3272 2731 305 288 88 56 chrX 99732482 99732697 -62867233 - L3 LINE CR1 -173 1404 1183 789 244 104 80 chrX 99732968 99733417 -62866513 - MLT1J LTR MaLR -6 495 15 2331 101 0 0 chrX 99733592 99733889 -62866041 + AluSx SINE Alu 2 298 -14 326 271 71 21 chrX 99734909 99735049 -62864881 + MLT1J1 LTR MaLR 70 216 -230 263 268 0 0 chrX 99736513 99736584 -62863346 + T-rich Low_complexity Low_complexity 1 71 0 822 206 38 0 chrX 99737172 99737356 -62862574 - MER20 DNA MER1_type 0 219 29 2520 221 54 111 chrX 99737434 99737658 -62862272 - MER97c DNA MER1_type? -1 1089 854 502 83 24 0 chrX 99737658 99737742 -62862188 + L1MA2 LINE L1 6219 6304 0 2520 221 54 111 chrX 99737742 99738459 -62861471 - MER97c DNA MER1_type? -236 854 220 1186 176 38 0 chrX 99738459 99738669 -62861261 + MER20B DNA MER1_type 2 219 0 2520 221 54 111 chrX 99738669 99738866 -62861064 - MER97c DNA MER1_type? -870 220 14 2031 131 24 0 chrX 99739598 99739896 -62860034 - AluSx SINE Alu -7 305 1 927 280 66 3 chrX 99739964 99740364 -62859566 + MLT1K LTR MaLR 128 586 -2 272 371 38 9 chrX 99740880 99740985 -62858945 + L2 LINE L2 3157 3264 -8 701 158 98 37 chrX 99741014 99741178 -62858752 + MER3 DNA MER1_type 19 192 -17 207 345 0 0 chrX 99741329 99741384 -62858546 + L2 LINE L2 3001 3055 -217 180 179 26 0 chrX 99741541 99741580 -62858350 - L2 LINE L2 -1 3312 3273 396 136 30 0 chrX 99741594 99741660 -62858270 + MLT1B LTR MaLR 323 390 0 213 308 60 43 chrX 99741700 99741817 -62858113 - L2 LINE L2 -178 3094 2976 2185 86 7 0 chrX 99741902 99742232 -62857698 + AluSc SINE Alu 1 332 0 434 349 128 29 chrX 99742235 99742516 -62857414 - L2 LINE L2 -429 2885 2577 305 250 0 0 chrX 99742521 99742577 -62857353 + L2 LINE L2 3203 3258 -14 23 33 0 0 chrX 99748142 99748172 -62851758 + AT_rich Low_complexity Low_complexity 1 30 0 344 268 21 21 chrX 99749127 99749183 -62850747 - L1MA10 LINE L1 0 6334 6279 4547 226 75 44 chrX 99749183 99749632 -62850298 - L1ME1 LINE L1 -47 6188 5755 1912 125 58 7 chrX 99749632 99749927 -62850003 + AluSx SINE Alu 1 310 -2 4547 226 75 44 chrX 99749927 99751905 -62848025 - L1ME1 LINE L1 -480 5755 3664 3824 246 56 17 chrX 99751907 99753182 -62846748 - L1ME1 LINE L1 -2695 3520 2197 389 55 0 0 chrX 99753190 99753245 -62846685 - L1MA3 LINE L1 0 6305 6251 9451 164 17 6 chrX 99753254 99753624 -62846306 - L1PB1 LINE L1 0 6867 6502 501 17 0 0 chrX 99753624 99753682 -62846248 + (TA)n Simple_repeat Simple_repeat 1 58 0 9451 164 17 6 chrX 99753682 99756174 -62843756 - L1PB1 LINE L1 -365 6502 3982 448 161 0 23 chrX 99756167 99756254 -62843676 - L1PB1 LINE L1 -6730 133 49 * 2197 73 35 3 chrX 99756268 99756583 -62843347 - L1MA1 LINE L1 -42 6260 5936 3782 103 22 7 chrX 99756594 99757175 -62842755 - L1MA1 LINE L1 -10 6292 5703 833 283 46 50 chrX 99757175 99757279 -62842651 - L1ME1 LINE L1 -4154 2242 2139 1917 180 24 0 chrX 99757279 99757618 -62842312 + MER7A DNA MER2_type 1 345 -1 833 283 46 50 chrX 99757618 99758120 -62841810 - L1ME1 LINE L1 -4257 2139 1651 29 47 0 0 chrX 99758497 99758540 -62841390 + AT_rich Low_complexity Low_complexity 1 43 0 669 257 27 9 chrX 99761781 99762003 -62837927 + L1MC4 LINE L1 7688 7913 -129 310 207 52 67 chrX 99762051 99762186 -62837744 + L1MC4 LINE L1 7902 8034 -8 1577 144 16 105 chrX 99762847 99763229 -62836701 - MER7A DNA MER2_type 0 346 1 1471 275 103 42 chrX 99763241 99763635 -62836295 - L2 LINE L2 -4 3309 2941 2356 83 7 0 chrX 99763635 99763936 -62835994 - AluSc SINE Alu -6 303 1 1471 275 103 42 chrX 99763936 99764388 -62835542 - L2 LINE L2 -372 2941 2413 806 205 5 43 chrX 99764388 99764598 -62835332 - MER69 DNA AcHobo 0 2526 2325 2082 263 92 57 chrX 99764638 99764892 -62835038 - HAL1 LINE L1 -1431 1076 832 3033 131 25 2 chrX 99764892 99765366 -62834564 + MER31A LTR ERV1 1 485 0 2082 263 92 57 chrX 99765366 99766138 -62833792 - HAL1 LINE L1 -1675 832 14 254 279 0 0 chrX 99766330 99766391 -62833539 - L2 LINE L2 -2 3311 3251 28 79 0 0 chrX 99766409 99766472 -62833458 + AT_rich Low_complexity Low_complexity 1 63 0 446 388 51 41 chrX 99767025 99767595 -62832335 - L2 LINE L2 -8 3264 2687 606 224 148 9 chrX 99767599 99767822 -62832108 + L1MC5 LINE L1 7154 7407 -554 254 370 0 30 chrX 99770245 99770345 -62829585 - L2 LINE L2 -18 3254 3158 2887 3 0 0 chrX 99770555 99770866 -62829064 + AluYa5 SINE Alu 1 311 0 605 307 67 13 chrX 99770878 99771116 -62828814 - MIR SINE MIR -11 251 1 298 307 21 79 chrX 99771116 99771394 -62828536 - L2 LINE L2 -680 2634 2373 1536 275 83 47 chrX 99771899 99773496 -62826434 - L1MEc LINE L1 -2455 3760 2144 419 286 38 8 chrX 99773810 99773943 -62825987 + MER117 DNA MER1_type 47 183 -14 445 291 30 67 chrX 99776316 99776481 -62823449 + MIR3 SINE MIR 19 177 -31 246 32 0 0 chrX 99776861 99776892 -62823038 + (TA)n Simple_repeat Simple_repeat 2 32 0 481 326 14 0 chrX 99776994 99777138 -62822792 + MIR SINE MIR 12 157 -105 31429 112 15 67 chrX 99777145 99779281 -62820649 + L1P3 LINE L1 12 2257 -3915 2153 86 0 7 chrX 99779281 99779561 -62820369 - AluY SINE Alu -12 299 22 31429 112 15 67 chrX 99779561 99783251 -62816679 + L1P3 LINE L1 2257 5525 -647 * 33036 84 4 9 chrX 99783230 99789379 -62810551 + L1PA6 LINE L1 11 6147 -3 210 91 0 0 chrX 99789379 99789412 -62810518 + (CA)n Simple_repeat Simple_repeat 2 34 0 5511 46 4 0 chrX 99789490 99790165 -62809765 + L1PA7 LINE L1 5476 6153 -1 329 330 46 0 chrX 99790165 99790274 -62809656 + MIR SINE MIR 147 260 -2 266 368 9 35 chrX 99790345 99790459 -62809471 + L2 LINE L2 3150 3260 -12 918 255 5 0 chrX 99790706 99790906 -62809024 + MIR SINE MIR 44 244 -18 279 79 0 0 chrX 99790923 99790961 -62808969 + (TAG)n Simple_repeat Simple_repeat 3 40 0 706 137 0 0 chrX 99791256 99791373 -62808557 - L1MA10 LINE L1 -14 6320 6204 1887 163 0 3 chrX 99792205 99792494 -62807436 + AluJb SINE Alu 1 288 -24 347 300 117 38 chrX 99794720 99794960 -62804970 + MIR SINE MIR 3 261 -1 25 0 0 0 chrX 99795049 99795074 -62804856 + AT_rich Low_complexity Low_complexity 1 25 0 1934 149 0 37 chrX 99795657 99795980 -62803950 - AluSx SINE Alu -1 311 1 207 302 43 79 chrX 99796326 99796465 -62803465 + MIR3 SINE MIR 73 206 -2 222 37 0 0 chrX 99796566 99796593 -62803337 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 288 158 0 0 chrX 99799211 99799268 -62800662 + GA-rich Low_complexity Low_complexity 2 58 0 467 163 0 0 chrX 99800054 99800134 -62799796 - MER116 DNA Mariner 0 80 1 572 247 91 16 chrX 99800163 99800349 -62799581 + MIR SINE MIR 7 206 -56 1057 176 44 13 chrX 99800360 99800587 -62799343 + L1MB7 LINE L1 5951 6184 0 252 0 0 0 chrX 99800693 99800721 -62799209 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 331 257 20 20 chrX 99802176 99802277 -62797653 + L1MC4 LINE L1 6603 6703 -1339 * 339 248 9 38 chrX 99802249 99802354 -62797576 - L1MC4 LINE L1 -1339 6703 6602 197 326 54 31 chrX 99803486 99803615 -62796315 - L2 LINE L2 -11 3302 3171 2315 92 3 0 chrX 99803807 99804110 -62795820 - AluSp SINE Alu -9 304 1 283 277 58 89 chrX 99805102 99805326 -62794604 + L1ME LINE L1 276 492 -5578 687 260 26 38 chrX 99805560 99805906 -62794024 + L1ME LINE L1 553 894 -5176 9638 223 66 15 chrX 99805919 99807372 -62792558 + L1PA13 LINE L1 1 1378 -5419 297 0 0 0 chrX 99807372 99807405 -62792525 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 9638 223 66 15 chrX 99807405 99809292 -62790638 + L1PA13 LINE L1 1378 3521 -3276 5588 176 31 26 chrX 99809296 99809817 -62790113 - L1MEc LINE L1 -2120 4095 3579 210 37 0 0 chrX 99809817 99809844 -62790086 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5588 176 31 26 chrX 99809844 99810530 -62789400 - L1MEc LINE L1 -2636 3579 2881 6826 107 9 5 chrX 99810534 99811559 -62788371 + L1MA2 LINE L1 5276 6304 0 22 0 0 0 chrX 99811559 99811581 -62788349 + AT_rich Low_complexity Low_complexity 1 22 0 2251 96 3 17 chrX 99811584 99811953 -62787977 + AluSp SINE Alu 1 313 0 420 242 36 99 chrX 99811990 99812466 -62787464 + L1M4 LINE L1 1344 1881 -4763 1073 282 48 19 chrX 99812513 99813028 -62786902 + L1M4 LINE L1 2062 2591 -4234 423 216 79 36 chrX 99813027 99813166 -62786764 - L1M4 LINE L1 -4107 2289 2145 * 835 196 78 81 chrX 99813182 99813579 -62786351 + L1M4 LINE L1 2269 2664 -3551 1263 297 21 27 chrX 99813605 99814261 -62785669 + L1M4 LINE L1 3265 3916 -2299 * 2320 137 5 0 chrX 99814255 99814649 -62785281 + L1P LINE L1 2805 3200 -2946 593 296 22 4 chrX 99814647 99814873 -62785057 + L1PBa LINE L1 129 358 -6505 * 476 235 0 0 chrX 99814990 99815075 -62784855 - FLAM_A SINE Alu -57 85 1 523 240 40 23 chrX 99815761 99815936 -62783994 - L1MC4 LINE L1 0 8042 7865 1644 160 3 10 chrX 99816287 99816575 -62783355 + AluSx SINE Alu 24 309 -3 520 218 82 54 chrX 99817107 99817254 -62782676 - MIR SINE MIR -14 248 98 2090 215 56 52 chrX 99817413 99817464 -62782466 - MLT1E2 LTR MaLR -2 624 575 671 232 0 0 chrX 99817464 99817589 -62782341 - FLAM_A SINE Alu -5 128 4 2090 215 56 52 chrX 99817589 99818156 -62781774 - MLT1E2 LTR MaLR -51 575 1 2384 227 33 4 chrX 99818534 99819019 -62780911 - MLT1E2 LTR MaLR -115 511 13 245 255 9 104 chrX 99819174 99819280 -62780650 - L2 LINE L2 -647 2667 2572 33 43 0 0 chrX 99821067 99821114 -62778816 + AT_rich Low_complexity Low_complexity 1 47 0 1328 129 74 0 chrX 99821116 99821372 -62778558 - L1MA7 LINE L1 -7 6284 6010 1686 291 80 52 chrX 99821888 99822700 -62777230 + L3 LINE CR1 405 1239 -338 192 280 60 0 chrX 99822764 99822814 -62777116 + L2 LINE L2 3241 3293 -20 544 254 32 60 chrX 99822830 99823015 -62776915 - L2 LINE L2 -4 3309 3130 * 1130 233 29 8 chrX 99823001 99823246 -62776684 + MIR SINE MIR 13 262 0 685 303 28 5 chrX 99823605 99823816 -62776114 + MIR SINE MIR 9 224 -38 532 277 136 5 chrX 99823810 99823994 -62775936 + MIR SINE MIR 50 257 -5 * 321 293 140 20 chrX 99824010 99824160 -62775770 + L3 LINE CR1 1387 1554 -23 269 286 0 0 chrX 99824690 99824753 -62775177 + MIR SINE MIR 84 146 -116 6598 65 4 7 chrX 99825234 99826263 -62773667 - L1PA8A LINE L1 -28 6103 5076 247 239 34 34 chrX 99827488 99827576 -62772354 - L3 LINE CR1 -1067 510 423 5191 138 5 12 chrX 99828243 99829253 -62770677 - L1PB4 LINE L1 -5 6151 5151 518 113 0 0 chrX 99829253 99829333 -62770597 - MADE1 DNA Mariner 0 80 1 5191 138 5 12 chrX 99829333 99829713 -62770217 - L1PB4 LINE L1 -1005 5151 4770 378 115 0 0 chrX 99830231 99830292 -62769638 + (CA)n Simple_repeat Simple_repeat 2 62 0 467 236 0 9 chrX 99833196 99833302 -62766628 + MIR SINE MIR 56 160 -102 635 263 41 100 chrX 99833861 99834200 -62765730 + MLT1J LTR MaLR 156 474 -37 3135 201 77 36 chrX 99834734 99835339 -62764591 - L1MD2 LINE L1 -23 6336 5692 2403 77 0 0 chrX 99835339 99835638 -62764292 - AluY SINE Alu -11 300 2 3135 201 77 36 chrX 99835638 99835799 -62764131 - L1MD2 LINE L1 -667 5692 5539 988 177 6 11 chrX 99835826 99836001 -62763929 - L1MDa LINE L1 -6363 177 4 2191 115 0 0 chrX 99838185 99838489 -62761441 - AluSx SINE Alu -8 304 1 2385 109 0 0 chrX 99842271 99842575 -62757355 + AluSx SINE Alu 1 304 -8 746 272 55 45 chrX 99842703 99843107 -62756823 - MER20B DNA MER1_type -36 747 340 2756 247 51 43 chrX 99843158 99844281 -62755649 - L2 LINE L2 -8 3305 2180 269 170 20 80 chrX 99844689 99844789 -62755141 + L2 LINE L2 792 885 -2429 573 263 26 13 chrX 99844863 99845015 -62754915 - MER20B DNA MER1_type -623 160 7 205 268 0 0 chrX 99845701 99845742 -62754188 - L2 LINE L2 -16 3297 3257 23 0 0 0 chrX 99849232 99849255 -62750675 + AT_rich Low_complexity Low_complexity 1 23 0 202 120 0 40 chrX 99849260 99849310 -62750620 + (TAAAAA)n Simple_repeat Simple_repeat 1 48 0 406 224 9 9 chrX 99849933 99850040 -62749890 + MIR SINE MIR 149 255 -7 359 257 52 43 chrX 99850148 99850427 -62749503 + MLT1I LTR MaLR 63 359 -50 1168 235 33 18 chrX 99850664 99850996 -62748934 - MER113 DNA MER1_type? -94 427 91 347 397 0 0 chrX 99852305 99852451 -62747479 - L2 LINE L2 -4 3309 3164 1482 101 186 73 chrX 99852497 99852824 -62747106 - THE1B LTR MaLR 0 364 1 10524 107 9 61 chrX 99852824 99854491 -62745439 - THE1B-int LTR MaLR 0 1580 1 1343 144 61 43 chrX 99854491 99854819 -62745111 - THE1C LTR MaLR 0 375 1 399 162 54 0 chrX 99854857 99854931 -62744999 - L2 LINE L2 -239 3074 2997 329 284 176 62 chrX 99854932 99855108 -62744822 + L2 LINE L2 2817 3012 -301 878 351 71 15 chrX 99855109 99855852 -62744078 - L2 LINE L2 -786 2528 1744 714 230 32 37 chrX 99857487 99857704 -62742226 - MIR SINE MIR -14 248 33 2405 70 3 22 chrX 99858357 99858669 -62741261 + AluY SINE Alu 1 306 -5 24 0 0 0 chrX 99858725 99858749 -62741181 + AT_rich Low_complexity Low_complexity 1 24 0 429 300 17 1 chrX 99858887 99859037 -62740893 + MIR SINE MIR 47 197 -62 503 270 93 72 chrX 99859056 99859492 -62740438 + MLT1H LTR MaLR 21 497 -52 2632 43 0 0 chrX 99859510 99859810 -62740120 - AluY SINE Alu -11 300 1 2488 63 0 0 chrX 99860643 99860942 -62738988 + AluY SINE Alu 1 299 -12 2364 96 0 0 chrX 99861032 99861345 -62738585 - AluSq SINE Alu 0 313 1 769 362 114 22 chrX 99861806 99862267 -62737663 + L2 LINE L2 1553 1970 -1344 2313 82 0 3 chrX 99862267 99862559 -62737371 - AluY SINE Alu -20 291 1 769 362 114 22 chrX 99862559 99862945 -62736985 + L2 LINE L2 1970 2478 -836 1973 269 34 17 chrX 99863106 99863443 -62736487 + L1MB7 LINE L1 4269 4599 -1547 180 77 0 0 chrX 99863443 99863469 -62736461 + (TG)n Simple_repeat Simple_repeat 2 27 0 1973 269 34 17 chrX 99863469 99863892 -62736038 + L1MB7 LINE L1 4599 5042 -1104 1121 222 9 0 chrX 99863893 99864105 -62735825 + MER58A DNA MER1_type 11 224 0 21 0 0 0 chrX 99864148 99864169 -62735761 + AT_rich Low_complexity Low_complexity 1 21 0 4632 184 9 12 chrX 99864259 99865177 -62734753 + L1MB7 LINE L1 5257 6171 -13 804 211 12 147 chrX 99865298 99865625 -62734305 + L1ME LINE L1 5420 5702 -460 192 302 179 0 chrX 99865699 99865805 -62734125 + L2 LINE L2 2631 2755 -559 382 262 74 8 chrX 99865817 99865939 -62733991 + MER5B DNA MER1_type 1 130 -48 247 326 189 48 chrX 99866016 99866307 -62733623 + L2 LINE L2 2941 3272 0 3513 222 20 22 chrX 99870613 99871157 -62728773 - L1ME2 LINE L1 -11 6222 5679 1591 167 18 107 chrX 99871157 99871558 -62728372 - MLT1A1 LTR MaLR 0 365 1 3513 222 20 22 chrX 99871558 99871910 -62728020 - L1ME2 LINE L1 -554 5679 5328 2170 128 27 24 chrX 99871921 99872295 -62727635 + THE1C LTR MaLR 1 375 0 7952 110 9 5 chrX 99872295 99873808 -62726122 + THE1C-int LTR MaLR 1 1580 0 2224 141 16 16 chrX 99873808 99874183 -62725747 + THE1C LTR MaLR 1 375 0 3118 275 53 27 chrX 99874183 99876280 -62723650 - L1ME2 LINE L1 -894 5321 3138 5847 103 23 2 chrX 99876295 99877934 -62721996 - L1PA16 LINE L1 -3 6163 4509 1765 166 13 7 chrX 99877935 99878236 -62721694 - MLT1A1 LTR MaLR -58 307 5 1367 243 9 9 chrX 99878240 99878659 -62721271 - L1ME2 LINE L1 -3481 2734 2316 * 1699 299 102 38 chrX 99878651 99880292 -62719638 - L1ME2 LINE L1 -4612 1784 39 2077 265 82 21 chrX 99880323 99881191 -62718739 - L1MC4 LINE L1 -15 8027 7107 1164 228 46 23 chrX 99881360 99881707 -62718223 - L1ME2 LINE L1 -111 6053 5699 1096 264 104 28 chrX 99881718 99882036 -62717894 + MLT1E LTR MaLR 9 350 -243 14503 164 87 4 chrX 99882038 99882821 -62717109 - L1 LINE L1 -3274 4291 3574 186 43 0 0 chrX 99882821 99882844 -62717086 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 14503 164 87 4 chrX 99882844 99882905 -62717025 - L1 LINE L1 -3991 3574 3519 1653 184 7 29 chrX 99882905 99883214 -62716716 - AluJb SINE Alu -10 302 1 14503 164 87 4 chrX 99883214 99884770 -62715160 - L1 LINE L1 -4046 3519 1557 222 37 0 0 chrX 99884770 99884797 -62715133 + (TC)n Simple_repeat Simple_repeat 2 28 0 14503 164 87 4 chrX 99884797 99885589 -62714341 - L1 LINE L1 -6008 1557 832 630 179 29 21 chrX 99885590 99885730 -62714200 - L1 LINE L1 -7424 141 1 368 214 58 71 chrX 99885724 99885791 -62714139 - L1ME2 LINE L1 -821 5325 5259 * 894 122 0 0 chrX 99885791 99885971 -62713959 + (TA)n Simple_repeat Simple_repeat 1 180 0 368 214 58 71 chrX 99885971 99886057 -62713873 - L1ME2 LINE L1 -887 5259 5174 10058 155 4 7 chrX 99886064 99886591 -62713339 - L1PA14 LINE L1 -6 7593 7066 2066 131 35 41 chrX 99886591 99886957 -62712973 + THE1B LTR MaLR 1 364 0 10058 155 4 7 chrX 99886957 99889029 -62710901 - L1PA14 LINE L1 -533 7066 5016 2183 140 27 16 chrX 99889029 99889400 -62710530 - THE1C LTR MaLR 0 375 1 7080 226 46 101 chrX 99889400 99892731 -62707199 - L1PA14 LINE L1 -4429 3155 1 542 240 129 7 chrX 99892734 99892947 -62706983 - L1ME2 LINE L1 -979 5167 4932 878 165 76 6 chrX 99892952 99893110 -62706820 - AluJb SINE Alu -7 305 137 1529 239 78 14 chrX 99893110 99893662 -62706268 - L1ME2 LINE L1 -1226 4920 4334 382 212 52 101 chrX 99894453 99894647 -62705283 + MIR SINE MIR 36 216 -46 3602 71 2 0 chrX 99895208 99895675 -62704255 + L1PA7 LINE L1 5679 6146 -8 25 31 0 0 chrX 99895830 99895862 -62704068 + AT_rich Low_complexity Low_complexity 1 32 0 197 302 19 0 chrX 99896792 99896845 -62703085 + L2 LINE L2 3208 3261 -11 717 296 80 38 chrX 99896903 99897779 -62702151 + L1ME3 LINE L1 5031 5952 -210 223 192 14 123 chrX 99899519 99899592 -62700338 - L3 LINE CR1 -2 1575 1511 238 309 31 52 chrX 99900983 99900996 -62698934 - L2 LINE L2 -19 3253 3241 188 86 29 0 chrX 99900996 99901031 -62698899 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 238 309 31 52 chrX 99901031 99901114 -62698816 - L2 LINE L2 -31 3241 3159 21 0 0 0 chrX 99901579 99901600 -62698330 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrX 99903318 99903345 -62696585 + AT_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chrX 99903515 99903564 -62696366 + AT_rich Low_complexity Low_complexity 1 49 0 203 271 103 37 chrX 99904006 99904113 -62695817 + L2 LINE L2 2479 2592 -722 613 221 15 23 chrX 99904369 99904543 -62695387 - MER104 DNA Tc2 -3 177 1 364 328 15 15 chrX 99904581 99904715 -62695215 + L2 LINE L2 3180 3313 0 22 0 0 0 chrX 99904796 99904818 -62695112 + AT_rich Low_complexity Low_complexity 1 22 0 301 336 32 36 chrX 99905250 99905470 -62694460 - L1MC4a LINE L1 -1911 5897 5679 30997 113 14 55 chrX 99905568 99911984 -62687946 - L1PA7 LINE L1 -3 6151 13 833 314 149 17 chrX 99912273 99912965 -62686965 - L1MC4a LINE L1 -1092 5054 4272 410 361 54 11 chrX 99913010 99913290 -62686640 - L1MC4a LINE L1 -1950 4196 3905 17993 157 37 40 chrX 99913303 99917491 -62682439 - L1MA2 LINE L1 0 7723 3567 411 21 0 0 chrX 99917491 99917539 -62682391 + (TG)n Simple_repeat Simple_repeat 1 48 0 17993 157 37 40 chrX 99917539 99921080 -62678850 - L1MA2 LINE L1 -4156 3567 18 298 266 77 70 chrX 99921101 99921872 -62678058 - L1MC4a LINE L1 -2693 3453 2678 2366 181 55 7 chrX 99921925 99922446 -62677484 - Tigger7 DNA MER2_type -1 2486 1 24 32 0 0 chrX 99922958 99922989 -62676941 + AT_rich Low_complexity Low_complexity 1 31 0 1315 268 64 15 chrX 99923031 99923438 -62676492 - L2 LINE L2 -1069 2245 1819 392 259 26 30 chrX 99923487 99923661 -62676269 + L1M4 LINE L1 91 522 -6333 189 0 0 0 chrX 99924191 99924212 -62675718 + (CA)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chrX 99924212 99924233 -62675697 + (A)n Simple_repeat Simple_repeat 1 21 0 2179 142 13 51 chrX 99924367 99924715 -62675215 - MST-int LTR MaLR -39 1612 1279 2212 110 0 0 chrX 99924715 99925005 -62674925 + AluSx SINE Alu 1 290 -22 2179 142 13 51 chrX 99925005 99925051 -62674879 - MST-int LTR MaLR -372 1279 1233 528 198 60 0 chrX 99925051 99925167 -62674763 - MLT2B2 LTR ERVL -390 125 3 239 271 57 0 chrX 99925168 99925238 -62674692 + L1M4 LINE L1 2296 2369 -4590 1794 183 0 7 chrX 99925240 99925546 -62674384 + AluJb SINE Alu 1 304 -8 734 283 47 29 chrX 99925546 99925822 -62674108 + LTR40a LTR ERVL 239 519 0 1348 281 34 3 chrX 99926651 99927035 -62672895 - L2 LINE L2 -1863 1451 1056 281 230 333 0 chrX 99927024 99927111 -62672819 + L2 LINE L2 3193 3308 -5 * 376 275 108 45 chrX 99927111 99927398 -62672532 - HAL1 LINE L1 -1056 1451 1147 1923 173 3 0 chrX 99929199 99929528 -62670402 + L1MB1 LINE L1 5816 6145 -23 575 303 48 5 chrX 99931367 99931555 -62668375 - MIR SINE MIR -65 197 2 638 256 35 17 chrX 99933151 99933323 -62666607 + MIR SINE MIR 73 247 -15 374 0 22 0 chrX 99934717 99934763 -62665167 + (TG)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chrX 99937374 99937395 -62662535 + AT_rich Low_complexity Low_complexity 1 21 0 717 157 0 8 chrX 99938474 99938595 -62661335 + FLAM_C SINE Alu 5 124 -9 24 32 0 0 chrX 99938595 99938626 -62661304 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 99939340 99939362 -62660568 + AT_rich Low_complexity Low_complexity 1 22 0 5901 120 46 14 chrX 99939478 99940882 -62659048 - L1PA13 LINE L1 -1 6162 4706 670 254 106 16 chrX 99943806 99943995 -62655935 - MER63A DNA MER1_type -2 208 3 253 327 195 13 chrX 99944307 99944466 -62655464 + MIR3 SINE MIR 20 207 -1 23 86 0 0 chrX 99945167 99945225 -62654705 + AT_rich Low_complexity Low_complexity 1 58 0 706 285 5 32 chrX 99945262 99945285 -62654645 - LTR33 LTR ERVL -1 520 498 1655 202 19 27 chrX 99945285 99945441 -62654489 + MLT1A1 LTR MaLR 1 157 -208 2300 82 0 38 chrX 99945441 99945757 -62654173 + AluSx SINE Alu 1 304 -8 1655 202 19 27 chrX 99945757 99945966 -62653964 + MLT1A1 LTR MaLR 157 363 -2 706 285 5 32 chrX 99945966 99946163 -62653767 - LTR33 LTR ERVL -23 498 306 819 307 65 7 chrX 99946279 99946556 -62653374 - LTR33 LTR ERVL -228 293 1 847 351 69 9 chrX 99946617 99947039 -62652891 - L2 LINE L2 0 3313 2867 1102 323 94 6 chrX 99947123 99947593 -62652337 - MLT1H1 LTR MaLR 0 555 45 1263 308 21 25 chrX 99947610 99948087 -62651843 - L2 LINE L2 -492 2822 2348 2444 114 14 3 chrX 99948159 99948528 -62651402 - THE1C LTR MaLR 0 375 3 577 96 0 11 chrX 99948530 99948624 -62651306 - THE1C-int LTR MaLR 0 1580 1488 448 86 0 111 chrX 99948624 99948705 -62651225 - THE1C LTR MaLR -303 72 1 949 281 4 12 chrX 99948728 99948977 -62650953 - MIR SINE MIR -13 249 3 259 91 23 0 chrX 99949275 99949319 -62650611 - L1MB7 LINE L1 -7 6177 6133 * 341 269 0 15 chrX 99949306 99949436 -62650494 + L1M4 LINE L1 5124 5251 -895 2246 116 3 45 chrX 99949436 99949790 -62650140 - MER1B DNA MER1_type 0 339 1 744 126 8 0 chrX 99949790 99949909 -62650021 + L1M4 LINE L1 5244 5363 -783 6538 207 36 58 chrX 99949957 99951816 -62648114 - L1M4 LINE L1 -1136 5010 3193 519 334 81 32 chrX 99951979 99952350 -62647580 - MLT1J LTR MaLR -104 407 19 21 71 0 0 chrX 99952443 99952485 -62647445 + AT_rich Low_complexity Low_complexity 1 42 0 360 353 13 27 chrX 99952682 99952832 -62647098 - MER5A DNA MER1_type -3 186 39 250 283 65 51 chrX 99952711 99952849 -62647081 + MER5A DNA MER1_type 44 183 -6 * 5532 116 25 3 chrX 99953503 99954960 -62644970 - L1PA15 LINE L1 -7 6158 4666 252 259 0 0 chrX 99954983 99955041 -62644889 - L1ME LINE L1 -456 5665 5608 361 350 35 0 chrX 99955044 99955244 -62644686 + L1ME4a LINE L1 5617 5823 -298 * 431 48 2 0 chrX 99955242 99955305 -62644625 - L1PA7 LINE L1 -442 5713 5650 3471 44 16 0 chrX 99955305 99955737 -62644193 + L1PA7 LINE L1 5715 6153 -1 222 91 0 0 chrX 99955884 99955917 -62644013 + (CA)n Simple_repeat Simple_repeat 2 34 0 380 182 74 41 chrX 99955947 99956068 -62643862 + L1ME4a LINE L1 5950 6074 -47 24 77 0 0 chrX 99956127 99956179 -62643751 + AT_rich Low_complexity Low_complexity 1 52 0 196 262 0 0 chrX 99956949 99956991 -62642939 - MIR SINE MIR -6 256 215 592 263 63 33 chrX 99957204 99957474 -62642456 - HAL1 LINE L1 0 2507 2230 586 270 40 9 chrX 99957507 99957729 -62642201 - HAL1 LINE L1 -340 2167 1939 2320 224 49 8 chrX 99957785 99958392 -62641538 - HAL1 LINE L1 -760 1747 1116 2132 296 112 24 chrX 99958433 99959346 -62640584 - HAL1 LINE L1 -1513 994 2 398 315 92 61 chrX 99959469 99959764 -62640166 + L2 LINE L2 3009 3312 -1 412 85 0 0 chrX 99960867 99960926 -62639004 - L1MD3 LINE L1 -10 7985 7927 1458 212 40 71 chrX 99960928 99961327 -62638603 + MLT1B LTR MaLR 3 394 -2 1846 204 118 44 chrX 99961327 99961828 -62638102 - L1MD3 LINE L1 -67 7928 7391 411 243 10 19 chrX 99961834 99961937 -62637993 - MLT1F1 LTR MaLR -465 102 1 500 221 87 0 chrX 99961944 99962071 -62637859 - L1MD3 LINE L1 -728 7267 7130 17417 168 57 13 chrX 99962072 99969440 -62630490 - L1MA2 LINE L1 -7 7716 12 1635 186 81 16 chrX 99969443 99969815 -62630115 - L1MD3 LINE L1 -831 7164 6769 429 70 0 0 chrX 99969815 99969872 -62630058 + (TG)n Simple_repeat Simple_repeat 2 58 0 1252 218 52 23 chrX 99969872 99970215 -62629715 - L1MC4a LINE L1 -1195 6613 6261 248 355 8 8 chrX 99970228 99970349 -62629581 - MER5A DNA MER1_type -68 121 1 183 306 0 47 chrX 99973160 99973245 -62626685 - MIR SINE MIR -18 244 164 555 330 47 50 chrX 99973443 99973740 -62626190 + L2 LINE L2 254 549 -2765 226 200 13 53 chrX 99974930 99975005 -62624925 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 254 29 29 0 chrX 99975005 99975040 -62624890 + (GA)n Simple_repeat Simple_repeat 2 37 0 3349 208 62 14 chrX 99975121 99975841 -62624089 + MER21B LTR ERV1 98 852 -11 1183 313 46 32 chrX 99975919 99976728 -62623202 + HAL1b LINE L1 89 908 -440 555 331 58 22 chrX 99976864 99977227 -62622703 + L1M4 LINE L1 2148 2523 -3623 434 293 100 48 chrX 99977320 99977590 -62622340 + L1M4 LINE L1 2857 3140 -3006 287 107 41 4 chrX 99977647 99977701 -62622229 - MST-int LTR MaLR -13 1722 1586 412 185 87 0 chrX 99977705 99977797 -62622133 - MLT2B1 LTR ERVL -418 102 3 1735 198 29 9 chrX 99977851 99978199 -62621731 - MST-int LTR MaLR -64 1587 1233 579 164 60 0 chrX 99978199 99978315 -62621615 - MLT2B2 LTR ERVL -390 125 3 613 223 8 0 chrX 99978390 99978511 -62621419 + FLAM_C SINE Alu 2 123 -10 1091 223 17 0 chrX 99978522 99978755 -62621175 + AluJo SINE Alu 3 239 -73 234 239 28 0 chrX 99978766 99978837 -62621093 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 1660 249 92 15 chrX 99978885 99978964 -62620966 + L1M4c LINE L1 3208 3280 -4285 1747 204 0 3 chrX 99978964 99979277 -62620653 - AluJo SINE Alu 0 312 1 1660 249 92 15 chrX 99979277 99980106 -62619824 + L1M4c LINE L1 3280 4185 -3380 9371 177 9 24 chrX 99980110 99981795 -62618135 + L1M1 LINE L1 13 1673 -5892 * 9606 161 110 20 chrX 99981794 99982430 -62617500 + L1M1 LINE L1 4270 4847 -2874 324 0 0 0 chrX 99982430 99982466 -62617464 + (TAA)n Simple_repeat Simple_repeat 1 36 0 9606 161 110 20 chrX 99982466 99982632 -62617298 + L1M1 LINE L1 4847 4997 -2724 246 32 0 0 chrX 99982632 99982663 -62617267 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9606 161 110 20 chrX 99982663 99984446 -62615484 + L1M1 LINE L1 4997 7105 -616 358 117 17 0 chrX 99984455 99984515 -62615415 + L1MA2 LINE L1 3926 3986 -2160 3400 114 67 20 chrX 99984525 99985121 -62614809 + L1MA2 LINE L1 5681 6304 0 201 88 0 70 chrX 99985166 99985223 -62614707 + (TTAAA)n Simple_repeat Simple_repeat 4 56 0 4139 234 62 58 chrX 99985223 99985727 -62614203 + L1MB7 LINE L1 2802 3303 -2881 339 34 356 0 chrX 99985727 99985786 -62614144 + MADE1 DNA Mariner 1 80 0 4139 234 62 58 chrX 99985786 99986240 -62613690 + L1MB7 LINE L1 3303 3754 -2430 536 42 14 0 chrX 99986240 99986311 -62613619 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 4139 234 62 58 chrX 99986311 99987838 -62612092 + L1MB7 LINE L1 3754 5325 -859 17598 89 4 1 chrX 99987838 99991115 -62608815 - L1PA7 LINE L1 0 6154 2872 4139 234 62 58 chrX 99991115 99991925 -62608005 + L1MB7 LINE L1 5325 6131 -53 249 73 49 0 chrX 99991928 99991969 -62607961 + L1PA11 LINE L1 6132 6174 0 228 191 0 0 chrX 99991966 99992008 -62607922 + L1MB7 LINE L1 6127 6168 -16 * 736 301 77 24 chrX 99992018 99992614 -62607316 + L1M4 LINE L1 3729 4353 -1793 363 181 0 0 chrX 99992808 99992880 -62607050 - L1MB2 LINE L1 -3 6168 6097 6142 102 22 2 chrX 99992912 99994231 -62605699 - L1PA16 LINE L1 -9 6157 4812 1749 250 138 18 chrX 99996839 99997547 -62602383 + L1MC4a LINE L1 6488 7280 -528 6686 50 24 3 chrX 99998025 99999132 -62600798 - L1PA8 LINE L1 -6 6166 5025 543 235 67 0 chrX 99999150 99999299 -62600631 - L1PBa LINE L1 -6546 317 159 * 5998 159 16 5 chrX 99999294 100001288 -62598642 + L1PB2 LINE L1 4140 6150 -1 1625 220 49 12 chrX 100001288 100001633 -62598297 + MLT1F LTR MaLR 154 511 -31 570 280 65 6 chrX 100002104 100002272 -62597658 + MIR SINE MIR 48 225 -37 461 262 62 13 chrX 100003174 100003399 -62596531 - L1ME4a LINE L1 -233 5888 5653 277 308 19 9 chrX 100003449 100003556 -62596374 + MLT1J LTR MaLR 108 215 -296 698 263 124 2 chrX 100003891 100004093 -62595837 + MIR SINE MIR 3 210 -52 225 244 167 0 chrX 100005234 100005312 -62594618 - L2 LINE L2 0 3272 3182 760 171 9 148 chrX 100006948 100007101 -62592829 + MER5A DNA MER1_type 1 117 -72 2642 160 14 0 chrX 100007101 100007544 -62592386 - L1PA16 LINE L1 -9 6157 5709 760 171 9 148 chrX 100007544 100007606 -62592324 + MER5A DNA MER1_type 117 186 -3 1083 319 28 39 chrX 100007829 100008443 -62591487 + L2 LINE L2 2714 3312 -1 229 217 22 0 chrX 100008445 100008491 -62591439 + GA-rich Low_complexity Low_complexity 3 49 0 4821 84 6 0 chrX 100008795 100009449 -62590481 - L1PA10 LINE L1 -1 6167 5510 403 66 0 0 chrX 100009450 100009511 -62590419 + AluSp/q SINE Alu 243 303 -10 992 95 0 0 chrX 100009511 100009648 -62590282 - L1PA10 LINE L1 -641 5527 5391 * 13849 127 6 24 chrX 100009647 100011652 -62588278 + L1P LINE L1 3080 5041 -1105 1864 119 14 38 chrX 100011652 100011968 -62587962 + AluSq SINE Alu 1 309 0 13849 127 6 24 chrX 100011968 100012270 -62587660 + L1P LINE L1 5041 5347 -799 819 133 0 0 chrX 100012266 100012394 -62587536 + L1PA15 LINE L1 3312 3439 -2707 * 21 36 0 0 chrX 100012597 100012625 -62587305 + AT_rich Low_complexity Low_complexity 1 28 0 7731 175 13 10 chrX 100012630 100014981 -62584949 - L1MB1 LINE L1 -1 6167 3808 3735 255 34 20 chrX 100014984 100015333 -62584597 - L1MB1 LINE L1 -2779 3367 3024 1500 197 48 22 chrX 100015333 100015689 -62584241 + MLT1A1 LTR MaLR 1 365 0 3735 255 34 20 chrX 100015689 100016559 -62583371 - L1MB1 LINE L1 -3122 3024 2131 2489 102 14 0 chrX 100016561 100016922 -62583008 - L1PB1 LINE L1 -4 6147 5782 474 77 0 58 chrX 100016922 100017026 -62582904 + (TA)n Simple_repeat Simple_repeat 1 98 0 3699 152 13 1 chrX 100017026 100018154 -62581776 - L1PB1 LINE L1 -360 5791 4656 6005 204 29 11 chrX 100018165 100020488 -62579442 + L1PA15 LINE L1 3620 6160 -5 223 186 0 0 chrX 100020500 100020543 -62579387 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 34 42 0 0 chrX 100020780 100020828 -62579102 + AT_rich Low_complexity Low_complexity 1 48 0 222 191 0 0 chrX 100020887 100020934 -62578996 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 231 322 0 23 chrX 100020938 100021025 -62578905 + L1 LINE L1 2659 2743 -3403 9782 193 29 24 chrX 100021060 100023014 -62576916 + L1M1 LINE L1 36 2000 -5565 1403 109 74 31 chrX 100023014 100023271 -62576659 + L1MA2 LINE L1 6037 6304 0 21 0 0 0 chrX 100023271 100023292 -62576638 + AT_rich Low_complexity Low_complexity 1 21 0 2313 98 3 0 chrX 100023455 100023751 -62576179 + AluSq SINE Alu 1 297 -16 228 67 0 0 chrX 100025787 100025817 -62574113 + (CA)n Simple_repeat Simple_repeat 2 31 0 287 283 133 8 chrX 100026294 100026414 -62573516 - MLT1I LTR MaLR -203 346 212 612 246 34 34 chrX 100026881 100027056 -62572874 - MLT1I LTR MaLR -228 181 7 237 139 0 0 chrX 100029166 100029209 -62570721 + (TG)n Simple_repeat Simple_repeat 1 43 0 2389 84 0 0 chrX 100030366 100030662 -62569268 - AluSx SINE Alu -16 296 1 351 336 23 46 chrX 100031702 100031833 -62568097 - L2 LINE L2 -7 3265 3138 457 308 28 14 chrX 100032943 100033086 -62566844 + MIR SINE MIR 1 145 -117 217 248 211 18 chrX 100033093 100033202 -62566728 + L2 LINE L2 3179 3308 -5 247 315 90 0 chrX 100033429 100033540 -62566390 - MIR SINE MIR -13 249 129 313 336 0 0 chrX 100033626 100033736 -62566194 + MIR SINE MIR 143 252 -10 24 0 0 0 chrX 100034227 100034251 -62565679 + AT_rich Low_complexity Low_complexity 1 24 0 428 277 13 50 chrX 100034463 100034645 -62565285 - MIR SINE MIR -71 191 17 278 341 0 0 chrX 100034690 100034781 -62565149 + MIR SINE MIR 63 153 -109 192 360 0 12 chrX 100034812 100034898 -62565032 - MIR SINE MIR -113 149 65 206 183 28 176 chrX 100035375 100035517 -62564413 + L2 LINE L2 2933 3053 -219 242 331 173 38 chrX 100035978 100036111 -62563819 + L2 LINE L2 3121 3271 -1 240 329 70 109 chrX 100036397 100036865 -62563065 + L2 LINE L2 2807 3256 -16 24 0 0 0 chrX 100036865 100036889 -62563041 + AT_rich Low_complexity Low_complexity 1 24 0 262 381 56 25 chrX 100036974 100037134 -62562796 + L2 LINE L2 3108 3272 0 230 190 17 17 chrX 100038277 100038335 -62561595 + CT-rich Low_complexity Low_complexity 1 58 0 193 370 0 14 chrX 100038589 100038662 -62561268 + L3 LINE CR1 1160 1231 -346 186 43 0 0 chrX 100038667 100038690 -62561240 + (TG)n Simple_repeat Simple_repeat 2 24 0 188 321 0 0 chrX 100038834 100038887 -62561043 + MIR3 SINE MIR 153 205 -3 456 317 145 14 chrX 100039082 100039303 -62560627 + MIR SINE MIR 10 259 -3 264 299 68 34 chrX 100040772 100040889 -62559041 + L2 LINE L2 3139 3259 -13 231 61 0 0 chrX 100040890 100040923 -62559007 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 204 40 0 0 chrX 100043706 100043731 -62556199 + (TG)n Simple_repeat Simple_repeat 1 25 0 2336 187 41 68 chrX 100045108 100045648 -62554282 - MLT2B3 LTR ERVL -2 552 28 371 156 0 0 chrX 100045949 100046013 -62553917 - L1PA14 LINE L1 -9 6152 6089 495 274 82 23 chrX 100046083 100046277 -62553653 - MIR3 SINE MIR -61 147 2 2011 144 0 10 chrX 100046410 100046715 -62553215 - AluSc SINE Alu -7 302 1 211 274 0 68 chrX 100046754 100046827 -62553103 + L2 LINE L2 3234 3301 -12 471 339 15 0 chrX 100047786 100047916 -62552014 + L2 LINE L2 3137 3268 -4 1579 124 21 109 chrX 100049904 100050243 -62549687 - AluYb8 SINE Alu -9 309 1 356 298 0 53 chrX 100050866 100050937 -62548993 + L2 LINE L2 3199 3263 -50 1673 211 5 22 chrX 100050937 100051306 -62548624 + MLT1A1 LTR MaLR 2 364 -1 356 298 0 53 chrX 100051306 100051348 -62548582 + L2 LINE L2 3263 3306 -7 21 0 0 0 chrX 100052239 100052260 -62547670 + AT_rich Low_complexity Low_complexity 1 21 0 490 273 109 70 chrX 100052267 100052707 -62547223 - L1MEd LINE L1 -2362 3767 3311 619 268 141 17 chrX 100052709 100053307 -62546623 - L1MEd LINE L1 -2884 3245 2574 361 330 29 22 chrX 100053375 100053651 -62546279 - L1MEd LINE L1 -3661 2468 2191 2147 70 70 3 chrX 100053680 100053965 -62545965 - AluY SINE Alu -7 304 1 2148 196 26 0 chrX 100054205 100054634 -62545296 - L1MD1 LINE L1 -2 6240 5801 450 271 114 28 chrX 100054987 100055341 -62544589 - L1MEd LINE L1 -905 1585 1151 1273 234 31 11 chrX 100055343 100055698 -62544232 - Zaphod DNA AcHobo -1 4030 3669 * 1970 229 98 37 chrX 100055694 100056213 -62543717 + MLT1E LTR MaLR 43 593 0 234 206 147 29 chrX 100056292 100056360 -62543570 - MER58 DNA MER1_type 0 2420 2345 386 229 114 9 chrX 100056367 100056472 -62543458 - MER58 DNA MER1_type -99 116 1 1069 171 20 7 chrX 100056680 100056896 -62543034 - MLT1C-int LTR MaLR -1040 331 1 1760 196 138 12 chrX 100056896 100057310 -62542620 - MLT1C LTR MaLR 0 467 2 225 179 45 0 chrX 100057310 100057377 -62542553 + (TA)n Simple_repeat Simple_repeat 1 70 0 1165 204 68 71 chrX 100057378 100057774 -62542156 - L1MC4 LINE L1 -143 7899 7505 2211 253 48 31 chrX 100057801 100058409 -62541521 - Zaphod DNA AcHobo -3413 618 1 382 237 43 94 chrX 100058440 100058624 -62541306 - L1MEd LINE L1 -4970 1149 988 2225 118 18 0 chrX 100058624 100058955 -62540975 - L1PB4 LINE L1 -3 6153 5817 382 237 43 94 chrX 100058955 100059099 -62540831 - L1MEd LINE L1 -5131 988 838 411 246 0 55 chrX 100059286 100059396 -62540534 + MIR SINE MIR 33 136 -126 217 179 18 54 chrX 100059934 100059990 -62539940 - L2 LINE L2 0 3272 3219 283 197 38 0 chrX 100060008 100060066 -62539864 - AluSx SINE Alu -2 298 280 264 231 0 0 chrX 100060066 100060118 -62539812 + LTR30 LTR ERV1 1 52 -670 1406 73 7 153 chrX 100060118 100060393 -62539537 + LTR12 LTR ERV1 53 287 -427 348 209 12 0 chrX 100060395 100060481 -62539449 + LTR30 LTR ERV1 556 642 -80 695 83 42 0 chrX 100060484 100060580 -62539350 + LTR12 LTR ERV1 615 714 0 1635 154 0 0 chrX 100060580 100060826 -62539104 - AluSx SINE Alu -66 246 1 228 222 102 85 chrX 100061065 100061241 -62538689 + L2 LINE L2 1796 1974 -1340 189 322 0 0 chrX 100061222 100061281 -62538649 + L2 LINE L2 3214 3272 0 * 808 334 82 52 chrX 100061487 100062160 -62537770 + L2 LINE L2 2215 2907 -407 299 293 53 0 chrX 100062272 100062347 -62537583 + L2 LINE L2 3194 3272 0 652 292 73 21 chrX 100062485 100062556 -62537374 - MIR SINE MIR -35 227 161 2487 53 0 3 chrX 100062556 100062855 -62537075 - AluY SINE Alu -13 298 1 652 292 73 21 chrX 100062855 100062975 -62536955 - MIR SINE MIR -101 161 26 1858 157 0 10 chrX 100063191 100063496 -62536434 - AluSx SINE Alu -10 302 1 1474 188 20 60 chrX 100063585 100063936 -62535994 - MLT1A2 LTR MaLR -37 337 1 2601 61 0 3 chrX 100064568 100064878 -62535052 + AluSc SINE Alu 1 309 0 22 35 0 0 chrX 100066917 100066946 -62532984 + AT_rich Low_complexity Low_complexity 1 29 0 437 299 31 0 chrX 100067335 100067462 -62532468 + L2 LINE L2 3178 3308 -5 2524 150 8 0 chrX 100067687 100068074 -62531856 - MLT1B LTR MaLR 0 390 1 318 226 0 0 chrX 100069456 100069518 -62530412 + Tigger2 DNA MER2_type 7 68 -2650 * 2299 111 85 38 chrX 100069509 100069931 -62529999 + Tigger2 DNA MER2_type 2273 2714 -4 1778 283 75 24 chrX 100070624 100071456 -62528474 + L2 LINE L2 2447 3312 -1 369 196 93 0 chrX 100071544 100071650 -62528280 - MIR SINE MIR -83 179 58 18640 158 53 25 chrX 100071907 100076225 -62523705 + L1M1 LINE L1 17 4450 -3115 2047 111 0 24 chrX 100076257 100076585 -62523345 + AluSg1 SINE Alu 1 321 0 998 235 16 1 chrX 100077384 100077626 -62522304 - MLT1H LTR MaLR -255 294 1 331 341 43 90 chrX 100077672 100077995 -62521935 - L2 LINE L2 -497 2817 2510 21 0 0 0 chrX 100078051 100078072 -62521858 + AT_rich Low_complexity Low_complexity 1 21 0 237 302 0 0 chrX 100079771 100079824 -62520106 + L2 LINE L2 3251 3303 -10 451 210 322 7 chrX 100079973 100080116 -62519814 + MIR SINE MIR 72 259 -3 254 267 20 0 chrX 100080170 100080271 -62519659 - LTR33A LTR ERVL -17 506 404 507 223 51 91 chrX 100080435 100080632 -62519298 - LTR33A LTR ERVL -333 190 2 2132 93 4 4 chrX 100080864 100081198 -62518732 - AluSc SINE Alu 0 335 2 225 94 0 0 chrX 100081551 100081583 -62518347 + (CA)n Simple_repeat Simple_repeat 1 32 0 431 174 61 0 chrX 100081614 100081712 -62518218 + MER112 DNA MER1_type 156 259 -1 575 286 83 9 chrX 100082874 100083091 -62516839 + MIR SINE MIR 21 253 -9 26 64 0 0 chrX 100084476 100084523 -62515407 + AT_rich Low_complexity Low_complexity 1 47 0 2140 179 6 3 chrX 100085344 100085707 -62514223 + MLT1A1 LTR MaLR 1 364 -1 220 136 23 0 chrX 100086701 100086745 -62513185 + (TA)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chrX 100087215 100087237 -62512693 + (T)n Simple_repeat Simple_repeat 1 22 0 1645 191 17 11 chrX 100087446 100087803 -62512127 + MLT1A1 LTR MaLR 7 365 0 323 153 69 28 chrX 100088357 100088429 -62511501 - L1ME LINE L1 -493 5671 5597 1579 178 27 7 chrX 100088514 100088807 -62511123 - AluJb SINE Alu -13 299 1 479 206 31 0 chrX 100089279 100089376 -62510554 + FRAM SINE Alu 56 155 -21 643 270 64 41 chrX 100089557 100089816 -62510114 - L1M4 LINE L1 -3451 2695 2419 1722 133 9 95 chrX 100089816 100089961 -62509969 + AluJb SINE Alu 1 107 -205 2216 82 11 0 chrX 100089961 100090273 -62509657 + AluY SINE Alu 1 315 0 1722 133 9 95 chrX 100090273 100090442 -62509488 + AluJb SINE Alu 107 289 -23 643 270 64 41 chrX 100090442 100090648 -62509282 - L1M4 LINE L1 -3727 2419 2219 565 195 23 17 chrX 100090693 100090867 -62509063 - L1MD3 LINE L1 -31 7964 7790 7395 141 81 8 chrX 100090982 100092372 -62507558 + Tigger2 DNA MER2_type 1192 2683 -35 1572 164 49 7 chrX 100092775 100093061 -62506869 - AluJb SINE Alu -14 298 1 217 276 78 135 chrX 100094671 100094863 -62505067 - MIR SINE MIR -18 244 64 759 74 37 0 chrX 100094992 100095100 -62504830 + AluSq/x SINE Alu 1 112 -200 1695 44 0 10 chrX 100095536 100095740 -62504190 + AluY SINE Alu 97 298 -13 619 246 42 50 chrX 100095750 100095990 -62503940 - LTR40c LTR ERVL -197 268 31 1197 145 4 88 chrX 100096424 100096673 -62503257 + AluJb SINE Alu 1 228 -84 332 302 65 16 chrX 100097049 100097294 -62502636 - L1 LINE L1 -1155 4991 4735 313 218 99 56 chrX 100097373 100097515 -62502415 - L1 LINE L1 -1549 4597 4450 1504 182 14 14 chrX 100097584 100097870 -62502060 + AluJb SINE Alu 6 291 -21 1067 187 5 19 chrX 100097914 100098123 -62501807 + AluJo SINE Alu 1 206 -106 216 0 0 0 chrX 100098706 100098730 -62501200 + (T)n Simple_repeat Simple_repeat 1 24 0 2234 108 3 0 chrX 100099707 100099995 -62499935 - AluSx SINE Alu -12 300 12 628 239 127 9 chrX 100100548 100100761 -62499169 - L2 LINE L2 -40 3273 3036 191 233 0 96 chrX 100101054 100101127 -62498803 - MIR SINE MIR -10 252 187 2401 86 0 10 chrX 100101674 100101987 -62497943 - AluSg SINE Alu 0 310 1 37 23 0 0 chrX 100102428 100102472 -62497458 + AT_rich Low_complexity Low_complexity 1 44 0 1763 159 3 31 chrX 100102548 100102838 -62497092 + AluSx SINE Alu 1 282 -30 244 230 40 0 chrX 100103110 100103184 -62496746 + L1M4 LINE L1 2072 2148 -4236 681 91 0 0 chrX 100103248 100103336 -62496594 + AluS SINE Alu 9 96 -217 1430 179 7 69 chrX 100103342 100103672 -62496258 + L1M4 LINE L1 5123 5423 -959 2189 107 7 0 chrX 100103672 100103970 -62495960 + AluSp SINE Alu 4 303 -10 1430 179 7 69 chrX 100103970 100104059 -62495871 + L1M4 LINE L1 5423 5516 -866 809 242 164 48 chrX 100104275 100105126 -62494804 + L1M4 LINE L1 4490 5445 -733 542 182 0 0 chrX 100105147 100105235 -62494695 - FLAM_A SINE Alu -54 88 1 180 339 15 0 chrX 100105405 100105470 -62494460 - MIR SINE MIR -111 151 86 189 329 41 0 chrX 100105594 100105667 -62494263 - MIR3 SINE MIR -35 173 98 549 244 41 154 chrX 100107611 100107832 -62492098 - MER91A DNA MER1_type 0 196 1 1974 137 13 10 chrX 100107893 100108199 -62491731 - AluSx SINE Alu -5 307 1 298 211 0 0 chrX 100109054 100109111 -62490819 - L2 LINE L2 0 3313 3257 2773 10 0 0 chrX 100109111 100109415 -62490515 + AluYa5 SINE Alu 1 304 -7 2199 66 0 28 chrX 100109524 100109852 -62490078 + AluSg SINE Alu 1 320 0 330 123 0 0 chrX 100109985 100110042 -62489888 + (TA)n Simple_repeat Simple_repeat 2 58 0 721 274 9 9 chrX 100110064 100110283 -62489647 + AluSc SINE Alu 1 219 -90 216 516 8 8 chrX 100110357 100110485 -62489445 + polypyrimidine Low_complexity Low_complexity 2 129 0 289 276 198 66 chrX 100110862 100111119 -62488811 + L3 LINE CR1 1150 1440 -137 590 296 37 56 chrX 100111272 100111352 -62488578 + L1M4c LINE L1 3024 3104 -3278 2085 91 14 0 chrX 100111352 100111656 -62488274 + AluSg SINE Alu 1 308 0 590 296 37 56 chrX 100111656 100111983 -62487947 + L1M4c LINE L1 3104 3424 -2958 2135 122 3 3 chrX 100112574 100112868 -62487062 + AluSx SINE Alu 1 294 -18 912 113 84 0 chrX 100112868 100113010 -62486920 + AluSg/x SINE Alu 135 288 -22 722 161 74 12 chrX 100113030 100113192 -62486738 - AluSg/x SINE Alu -4 306 135 2212 108 3 14 chrX 100113192 100113487 -62486443 - AluSg SINE Alu -18 292 1 432 148 12 0 chrX 100113535 100113616 -62486314 + Charlie5 DNA MER1_type 2536 2617 0 1054 198 0 0 chrX 100113756 100113928 -62486002 - AluJb SINE Alu -9 303 132 7510 31 20 2 chrX 100113928 100115234 -62484696 - L1PA4 LINE L1 0 6155 4840 1106 46 0 13 chrX 100115342 100115493 -62484437 - L1PA4 LINE L1 -1808 4338 4190 * 8688 87 11 0 chrX 100115492 100116769 -62483161 - L1PA4 LINE L1 -2900 3246 1956 1877 148 3 31 chrX 100117415 100117733 -62482197 + AluSx SINE Alu 1 309 -3 477 261 82 10 chrX 100117764 100117959 -62481971 + L1MC4 LINE L1 7685 7893 -149 27 0 0 0 chrX 100118315 100118342 -62481588 + AT_rich Low_complexity Low_complexity 1 27 0 336 311 111 36 chrX 100118394 100118619 -62481311 + L1ME LINE L1 5385 5626 -495 1722 203 45 5 chrX 100118782 100119161 -62480769 + L1MC4a LINE L1 7316 7709 -99 1585 187 0 17 chrX 100120198 100120498 -62479432 + AluJo SINE Alu 1 295 -17 409 173 0 0 chrX 100120504 100120579 -62479351 - L1MB4 LINE L1 -60 6120 6046 765 141 83 0 chrX 100120580 100120701 -62479229 + AluJo SINE Alu 6 136 -176 1095 241 58 84 chrX 100121495 100122058 -62477872 + L1M4 LINE L1 3048 3589 -2557 2138 117 70 3 chrX 100122058 100122399 -62477531 + THE1B LTR MaLR 1 364 0 1095 241 58 84 chrX 100122399 100122562 -62477368 + L1M4 LINE L1 3589 3755 -2391 1056 147 71 9 chrX 100122564 100122788 -62477142 + L1MA8 LINE L1 6050 6287 -4 368 43 0 0 chrX 100122816 100122862 -62477068 + L1MA6 LINE L1 6147 6192 -108 1427 102 28 114 chrX 100122862 100123294 -62476636 + MER4B LTR ERV1 1 610 0 260 128 21 0 chrX 100123294 100123341 -62476589 + L1MA6 LINE L1 6189 6236 -64 402 21 0 0 chrX 100123615 100123662 -62476268 + (CA)n Simple_repeat Simple_repeat 2 48 0 9690 95 20 0 chrX 100124198 100126412 -62473518 - L1PA6 LINE L1 -5 6149 3904 850 283 83 11 chrX 100127142 100127693 -62472237 - L1MEc LINE L1 -4766 1630 1040 1873 142 0 10 chrX 100127758 100128047 -62471883 - AluSx SINE Alu -26 286 1 1124 153 0 0 chrX 100128145 100128308 -62471622 - AluSg/x SINE Alu -13 297 135 1620 164 0 0 chrX 100128308 100128571 -62471359 - AluSg SINE Alu -12 298 36 3629 91 13 2 chrX 100128571 100129098 -62470832 - L1P LINE L1 -780 5366 4834 2308 100 3 0 chrX 100129786 100130095 -62469835 - AluSg SINE Alu 0 310 1 1842 145 32 7 chrX 100130107 100130390 -62469540 - AluSx SINE Alu -22 290 1 300 279 29 81 chrX 100130764 100130900 -62469030 + MIR3 SINE MIR 8 136 -72 327 208 52 0 chrX 100131110 100131187 -62468743 - MLT1F1 LTR MaLR -486 81 1 1204 154 8 43 chrX 100131188 100131422 -62468508 - L1MD3 LINE L1 -718 7277 7052 255 306 16 0 chrX 100131429 100131553 -62468377 - L1MEc LINE L1 -4104 2292 2167 4203 221 30 10 chrX 100131739 100132832 -62467098 + L1 LINE L1 4136 5205 -941 7031 55 6 1 chrX 100132832 100133729 -62466201 + L1PA7 LINE L1 5254 6154 0 1669 121 51 16 chrX 100133731 100134045 -62465885 + L1MA8 LINE L1 5959 6283 -8 4203 221 30 10 chrX 100134045 100134062 -62465868 + L1 LINE L1 5205 5272 -874 225 175 25 0 chrX 100134062 100134102 -62465828 + (TG)n Simple_repeat Simple_repeat 2 42 0 201 139 0 0 chrX 100134103 100134146 -62465784 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 342 0 0 0 chrX 100134152 100134190 -62465740 + (GA)n Simple_repeat Simple_repeat 2 39 0 269 296 99 21 chrX 100134830 100134972 -62464958 + MIR SINE MIR 47 199 -63 1084 204 115 70 chrX 100136516 100136889 -62463041 - MLT1B LTR MaLR 0 390 1 421 285 118 50 chrX 100137202 100137405 -62462525 - L1ME4a LINE L1 -276 5845 5657 1967 165 79 27 chrX 100137405 100137810 -62462120 + MSTC LTR MaLR 1 426 -2 421 285 118 50 chrX 100137810 100138121 -62461809 - L1ME4a LINE L1 -464 5657 5296 21 0 0 0 chrX 100138596 100138617 -62461313 + AT_rich Low_complexity Low_complexity 1 21 0 1801 191 18 3 chrX 100139083 100139419 -62460511 + MLT2C1 LTR ERVL 6 346 -51 2087 123 3 7 chrX 100139425 100139725 -62460205 + AluSx SINE Alu 1 299 -13 1668 171 16 19 chrX 100139762 100140084 -62459846 - Tigger2 DNA MER2_type -5 2713 2393 203 161 0 0 chrX 100140084 100140115 -62459815 + (TG)n Simple_repeat Simple_repeat 1 31 0 263 95 0 24 chrX 100140115 100140157 -62459773 + MLT2C1 LTR ERVL 357 397 0 272 250 120 40 chrX 100140939 100141039 -62458891 - LTR65 LTR ERV1 -10 659 552 873 243 29 25 chrX 100141493 100141736 -62458194 - MER110-int LTR ERV1 -3 4644 4401 213 218 127 0 chrX 100142120 100142175 -62457755 + MIR SINE MIR 40 101 -161 1120 239 8 56 chrX 100142195 100142555 -62457375 - L1MA9 LINE L1 -32 6280 5938 582 214 50 14 chrX 100142574 100142714 -62457216 + MIR SINE MIR 110 254 -8 1846 62 0 4 chrX 100142727 100142954 -62456976 - AluY SINE Alu -3 308 83 13208 95 6 27 chrX 100142980 100145611 -62454319 + L1PA7 LINE L1 1 2625 -3836 21715 91 20 0 chrX 100145711 100149580 -62450350 + L1PA7 LINE L1 2557 6469 0 351 349 71 18 chrX 100149654 100149823 -62450107 + MER5B DNA MER1_type 1 178 0 1474 219 15 0 chrX 100150018 100150346 -62449584 + L1P LINE L1 4097 4429 -1717 7618 197 201 11 chrX 100150347 100152893 -62447037 - L1P4 LINE L1 -581 5582 2528 1164 226 63 8 chrX 100152893 100153198 -62446732 + MER31B LTR ERV1 145 543 0 871 267 74 29 chrX 100153604 100154023 -62445907 - L1MC4a LINE L1 -1850 5958 5521 487 204 68 11 chrX 100154030 100154221 -62445709 - L1MC4a LINE L1 -2340 5468 5267 321 314 135 31 chrX 100154235 100154464 -62445466 - L1MC4a LINE L1 -894 5252 5000 339 296 70 23 chrX 100154497 100154842 -62445088 - L1MC4a LINE L1 -1298 4848 4488 238 320 56 8 chrX 100155631 100155756 -62444174 + L2 LINE L2 2724 2854 -460 2323 149 18 3 chrX 100155871 100156367 -62443563 - MER34B LTR ERV1 -29 536 3 297 289 0 0 chrX 100156374 100156450 -62443480 + MER63 DNA MER1_type 677 752 -84 345 330 54 107 chrX 100156480 100156834 -62443096 + L2 LINE L2 2938 3272 0 1974 132 3 31 chrX 100156924 100157243 -62442687 + AluSx SINE Alu 1 310 -2 702 263 6 0 chrX 100157698 100157858 -62442072 + FRAM SINE Alu 2 162 -4 523 87 70 23 chrX 100159863 100160035 -62439895 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 35 0 0 chrX 100160035 100160064 -62439866 + AT_rich Low_complexity Low_complexity 1 29 0 751 110 11 22 chrX 100160064 100160246 -62439684 + (TA)n Simple_repeat Simple_repeat 1 180 0 341 22 0 0 chrX 100160365 100160411 -62439519 + L1PA3 LINE L1 6110 6155 0 1176 240 106 34 chrX 100160447 100160797 -62439133 + LTR40a LTR ERVL 143 517 -2 237 156 22 0 chrX 100160803 100160848 -62439082 - MIR3 SINE MIR -13 195 150 270 316 11 0 chrX 100160848 100160943 -62438987 - MER103 DNA DNA -67 99 4 270 234 95 43 chrX 100161036 100161129 -62438801 - MIR SINE MIR -67 141 75 692 270 50 54 chrX 100161311 100161570 -62438360 + LTR16A1 LTR ERVL 198 455 -2 392 0 21 0 chrX 100161629 100161677 -62438253 + (TG)n Simple_repeat Simple_repeat 2 50 0 180 0 0 0 chrX 100161787 100161807 -62438123 + (A)n Simple_repeat Simple_repeat 1 20 0 217 243 14 108 chrX 100162125 100162199 -62437731 - L2 LINE L2 0 3272 3206 766 229 78 16 chrX 100162200 100162392 -62437538 + MER63A DNA MER1_type 1 204 -6 491 276 26 0 chrX 100162839 100162995 -62436935 + MER103 DNA DNA 5 164 -2 244 297 36 45 chrX 100164497 100164608 -62435322 - L2 LINE L2 -6 3307 3198 212 356 122 9 chrX 100165264 100165379 -62434551 - L2 LINE L2 -804 2510 2383 2327 173 56 42 chrX 100165620 100166118 -62433812 + MLT1D LTR MaLR 1 505 0 477 304 81 49 chrX 100166134 100166539 -62433391 + MLT1J LTR MaLR 56 511 0 2146 100 4 0 chrX 100166671 100166950 -62432980 + AluSg SINE Alu 1 326 0 394 22 0 0 chrX 100166950 100166996 -62432934 + (TAA)n Simple_repeat Simple_repeat 1 180 0 654 312 139 71 chrX 100167084 100168136 -62431794 + L2 LINE L2 2170 3299 -14 2441 54 0 17 chrX 100169049 100169345 -62430585 + AluY SINE Alu 2 292 -19 1617 184 24 40 chrX 100169767 100170137 -62429793 + MLT1A1 LTR MaLR 2 365 0 2175 108 7 0 chrX 100170727 100171034 -62428896 + AluSx SINE Alu 1 309 -3 21 36 0 0 chrX 100171684 100171712 -62428218 + AT_rich Low_complexity Low_complexity 1 28 0 1628 166 61 0 chrX 100172148 100172265 -62427665 + AluJb SINE Alu 1 109 -203 314 23 23 0 chrX 100172265 100172308 -62427622 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 1628 166 61 0 chrX 100172308 100172467 -62427463 + AluJb SINE Alu 109 294 -18 2460 74 0 7 chrX 100172468 100172778 -62427152 + AluY SINE Alu 1 308 -3 839 276 34 34 chrX 100172897 100173165 -62426765 - MLT1A1 LTR MaLR -55 310 43 2525 105 26 0 chrX 100173165 100173545 -62426385 - L1PA14 LINE L1 -3 6158 5769 8464 137 2 2 chrX 100173606 100175697 -62424233 - L1PA10 LINE L1 -16 6152 4038 1226 83 52 0 chrX 100175697 100175889 -62424041 + L1MA1 LINE L1 6100 6302 0 8626 199 16 4 chrX 100175889 100178745 -62421185 + L1PA16 LINE L1 3279 6165 -1 234 0 0 0 chrX 100179120 100179146 -62420784 + (CA)n Simple_repeat Simple_repeat 1 26 0 513 297 29 0 chrX 100181698 100181836 -62418094 - L2 LINE L2 0 3313 3172 3887 108 64 2 chrX 100182024 100182621 -62417309 - MER39B LTR ERV1 0 625 8 219 88 0 0 chrX 100182852 100182886 -62417044 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 302 19 0 chrX 100183229 100183282 -62416648 + L2 LINE L2 3154 3207 -65 * 416 235 59 10 chrX 100183278 100183380 -62416550 - L2 LINE L2 0 3313 3207 215 304 25 13 chrX 100183699 100183778 -62416152 - MIR SINE MIR -4 258 179 3645 103 15 6 chrX 100184559 100185175 -62414755 + L1PB1 LINE L1 5163 5781 -370 2567 97 0 0 chrX 100185298 100185659 -62414271 + L1PB1 LINE L1 5791 6151 0 438 243 29 0 chrX 100185693 100185796 -62414134 - Charlie8 DNA MER1_type -2231 186 81 951 179 61 31 chrX 100186374 100186570 -62413360 - MLT1A2 LTR MaLR 0 374 173 227 190 17 0 chrX 100186601 100186659 -62413271 + (TG)n Simple_repeat Simple_repeat 1 59 0 * 297 89 0 0 chrX 100186658 100186703 -62413227 + (GA)n Simple_repeat Simple_repeat 1 45 0 586 188 8 8 chrX 100186730 100186847 -62413083 - MLT1A2 LTR MaLR -218 156 40 786 177 14 7 chrX 100187623 100187770 -62412160 + L1ME LINE L1 5459 5606 -558 1788 134 27 30 chrX 100187771 100188100 -62411830 + L1MB4 LINE L1 5846 6173 -7 302 183 70 14 chrX 100188180 100188251 -62411679 + L1ME LINE L1 5601 5675 -489 257 0 30 0 chrX 100189058 100189091 -62410839 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chrX 100190198 100190227 -62409703 + AT_rich Low_complexity Low_complexity 1 29 0 506 206 79 32 chrX 100192251 100192377 -62407553 + MIR SINE MIR 28 159 -103 1729 195 108 14 chrX 100192605 100193020 -62406910 - MLT1D LTR MaLR 0 505 52 269 296 99 21 chrX 100194089 100194231 -62405699 - MIR SINE MIR -63 199 47 342 0 0 0 chrX 100194871 100194909 -62405021 + (TC)n Simple_repeat Simple_repeat 2 39 0 201 139 0 0 chrX 100194915 100194958 -62404972 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 * 227 200 0 17 chrX 100194955 100195015 -62404915 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1669 121 51 16 chrX 100195016 100195330 -62404600 - L1MA8 LINE L1 -8 6283 5959 7031 55 24 14 chrX 100195332 100196294 -62403636 - L1PA7 LINE L1 0 6154 5191 967 113 0 0 chrX 100196294 100196436 -62403494 - L1MA8 LINE L1 -348 5943 5802 24 0 0 0 chrX 100197351 100197375 -62402555 + AT_rich Low_complexity Low_complexity 1 24 0 476 330 109 14 chrX 100198069 100198417 -62401513 + L3 LINE CR1 1093 1473 -104 591 280 72 16 chrX 100198504 100198697 -62401233 - MIR SINE MIR -54 208 5 211 189 0 0 chrX 100198869 100198906 -62401024 + (TG)n Simple_repeat Simple_repeat 2 38 0 549 228 78 24 chrX 100198979 100199146 -62400784 + L2 LINE L2 2149 2324 -990 1158 305 72 38 chrX 100199378 100199879 -62400051 + L1MA6 LINE L1 7 524 -6265 * 12322 173 35 57 chrX 100199859 100203685 -62396245 + L1MA6 LINE L1 1356 6425 -517 674 194 69 62 chrX 100203691 100203851 -62396079 + FRAM SINE Alu 2 162 -4 218 156 22 0 chrX 100203880 100203925 -62396005 + GA-rich Low_complexity Low_complexity 2 47 0 2650 175 27 6 chrX 100203935 100204449 -62395481 + L1MA6 LINE L1 6411 6935 -7 410 289 209 14 chrX 100204651 100204862 -62395068 + MIR SINE MIR 1 252 -10 578 260 98 17 chrX 100205990 100206163 -62393767 + MER5A DNA MER1_type 1 187 -2 317 358 88 36 chrX 100206668 100206998 -62392932 - L2 LINE L2 -38 3234 2888 2268 127 104 8 chrX 100207152 100207538 -62392392 - MSTA LTR MaLR -5 423 1 308 256 146 0 chrX 100207925 100208007 -62391923 - L2 LINE L2 -19 3294 3201 257 352 0 11 chrX 100208071 100208162 -62391768 + MIR SINE MIR 11 100 -162 12547 190 69 15 chrX 100208326 100209680 -62390250 + L1MA4A LINE L1 408 1688 -5317 1705 180 23 10 chrX 100209680 100209980 -62389950 + AluJb SINE Alu 1 304 -8 12547 190 69 15 chrX 100209980 100211730 -62388200 + L1MA4A LINE L1 1688 3343 -3662 2156 113 3 3 chrX 100211730 100212030 -62387900 + AluSc SINE Alu 1 300 -9 12547 190 69 15 chrX 100212030 100212359 -62387571 + L1MA4A LINE L1 3343 3653 -3352 1977 124 3 0 chrX 100212359 100212641 -62387289 + AluSp SINE Alu 1 283 -30 12547 190 69 15 chrX 100212641 100213428 -62386502 + L1MA4A LINE L1 3653 4396 -2609 7357 99 5 26 chrX 100213428 100214523 -62385407 + MER11C LTR ERVK 1 1071 0 12547 190 69 15 chrX 100214523 100216530 -62383400 + L1MA4A LINE L1 4396 7001 -4 352 302 28 34 chrX 100216531 100216710 -62383220 + L1ME LINE L1 1646 1823 -4573 388 287 76 10 chrX 100217026 100217316 -62382614 + L1ME LINE L1 2141 2396 -3819 320 317 82 0 chrX 100217386 100217569 -62382361 + L1ME LINE L1 2732 2929 -3286 * 533 294 88 51 chrX 100217551 100218116 -62381814 + L1ME LINE L1 4559 5144 -1071 2359 58 0 0 chrX 100218129 100218430 -62381500 - AluY SINE Alu 0 306 6 404 278 56 28 chrX 100218525 100218765 -62381165 + L1ME LINE L1 5360 5605 -634 6798 216 17 14 chrX 100218787 100220386 -62379544 + L1P LINE L1 3573 5175 -971 351 0 0 0 chrX 100220543 100220582 -62379348 + (CA)n Simple_repeat Simple_repeat 1 39 0 274 234 68 127 chrX 100220582 100220834 -62379096 + L1ME LINE L1 5684 5920 -311 21 57 0 0 chrX 100220928 100220963 -62378967 + AT_rich Low_complexity Low_complexity 1 35 0 2372 83 0 3 chrX 100221242 100221543 -62378387 + AluSp SINE Alu 3 302 -11 5646 147 55 14 chrX 100221545 100222659 -62377271 - L1MC1 LINE L1 -27 6306 5149 21 0 0 0 chrX 100224453 100224474 -62375456 + AT_rich Low_complexity Low_complexity 1 21 0 351 44 0 0 chrX 100224503 100224548 -62375382 + (TG)n Simple_repeat Simple_repeat 2 46 0 398 314 50 88 chrX 100224731 100225072 -62374858 + MLT1H LTR MaLR 57 384 -25 1831 163 58 13 chrX 100225115 100225508 -62374422 - L1MB8 LINE L1 -1 6177 5767 276 30 0 0 chrX 100225646 100225679 -62374251 + (GA)n Simple_repeat Simple_repeat 2 34 0 700 246 35 0 chrX 100226061 100226232 -62373698 - MIR SINE MIR 0 262 86 21 0 0 0 chrX 100227077 100227098 -62372832 + AT_rich Low_complexity Low_complexity 1 21 0 399 328 29 23 chrX 100227441 100227612 -62372318 + L2 LINE L2 2609 2780 -534 21 82 0 0 chrX 100228110 100228159 -62371771 + AT_rich Low_complexity Low_complexity 1 49 0 187 361 21 41 chrX 100228301 100228398 -62371532 - L2 LINE L2 -22 3250 3156 294 309 91 0 chrX 100228550 100228660 -62371270 + L2 LINE L2 3194 3313 0 191 36 36 0 chrX 100229387 100229415 -62370515 + (CAA)n Simple_repeat Simple_repeat 3 31 0 2588 141 34 0 chrX 100229470 100229882 -62370048 + MSTB LTR MaLR 1 426 0 225 83 0 0 chrX 100230240 100230276 -62369654 + (T)n Simple_repeat Simple_repeat 1 36 0 1316 62 0 0 chrX 100231190 100231352 -62368578 - AluY SINE Alu -1 310 149 2002 163 41 0 chrX 100231352 100231690 -62368240 + HERVH LTR ERV1 4798 5149 -2564 1297 126 33 5 chrX 100231691 100231905 -62368025 + HERVH LTR ERV1 5600 5819 -1894 * 2484 77 48 13 chrX 100231903 100232282 -62367648 + HERVH LTR ERV1 7322 7713 0 1328 154 85 111 chrX 100232282 100232742 -62367188 + LTR7 LTR ERV1 1 448 -2 1209 69 0 38 chrX 100232744 100232903 -62367027 - AluY SINE Alu -158 153 1 3182 133 6 8 chrX 100233083 100233570 -62366360 - LTR29 LTR ERV1 0 622 137 1526 240 104 43 chrX 100234155 100234763 -62365167 - MER50 LTR ERV1 0 734 90 214 174 0 0 chrX 100234919 100234965 -62364965 + (TA)n Simple_repeat Simple_repeat 2 47 0 1802 206 143 36 chrX 100235032 100235741 -62364189 - LTR1B LTR ERV1 -13 772 2 457 391 13 13 chrX 100236656 100236881 -62363049 - MIR SINE MIR -35 227 3 3214 126 61 50 chrX 100236978 100237581 -62362349 - MER4B LTR ERV1 0 610 1 2806 152 48 29 chrX 100237597 100238177 -62361753 - LTR49 LTR ERV1 -4 591 1 251 241 0 0 chrX 100238632 100238686 -62361244 + (TAA)n Simple_repeat Simple_repeat 3 56 0 375 272 136 8 chrX 100238694 100238819 -62361111 - MIR SINE MIR -6 256 116 3577 154 12 3 chrX 100238821 100239417 -62360513 + MER41B LTR ERV1 2 602 -33 511 138 12 0 chrX 100239521 100239601 -62360329 + MER41A LTR ERV1 474 554 0 311 298 53 0 chrX 100239601 100239695 -62360235 - MIR SINE MIR -149 113 15 * 421 296 143 23 chrX 100239675 100239891 -62360039 + MIR SINE MIR 21 262 0 222 118 0 0 chrX 100240348 100240382 -62359548 + (CA)n Simple_repeat Simple_repeat 1 34 0 517 223 185 32 chrX 100240820 100240977 -62358953 - MER5A DNA MER1_type 0 189 9 284 238 107 12 chrX 100241080 100241164 -62358766 + MER5A DNA MER1_type 98 189 0 810 223 18 6 chrX 100241246 100241412 -62358518 + MER5B DNA MER1_type 11 178 0 33 0 0 0 chrX 100241673 100241706 -62358224 + AT_rich Low_complexity Low_complexity 1 33 0 206 271 0 0 chrX 100242251 100242299 -62357631 - L2 LINE L2 -10 3303 3256 279 321 0 18 chrX 100243887 100243999 -62355931 + LTR40a LTR ERVL 6 115 -404 41975 41 26 2 chrX 100243999 100249472 -62350458 + L1P1 LINE L1 13 5613 -542 12202 208 103 37 chrX 100249572 100254196 -62345734 - L1 LINE L1 -1704 5144 1 440 259 163 11 chrX 100254928 100255198 -62344732 + L1ME4a LINE L1 5594 5904 -217 1718 233 23 36 chrX 100255764 100256291 -62343639 + L1MB7 LINE L1 5620 6139 -45 679 259 20 55 chrX 100256568 100256769 -62343161 - MER63A DNA MER1_type 0 210 17 1599 184 120 16 chrX 100257472 100257922 -62342008 - LTR54B LTR ERV1 -1 497 1 1133 218 95 30 chrX 100258210 100258610 -62341320 + LTR37A LTR ERV1 1 426 0 199 209 105 95 chrX 100259115 100259220 -62340710 - MER5B DNA MER1_type 0 178 73 25 31 0 0 chrX 100260352 100260384 -62339546 + AT_rich Low_complexity Low_complexity 1 32 0 480 297 40 0 chrX 100260806 100260954 -62338976 - MIR SINE MIR -4 258 105 233 163 0 0 chrX 100261230 100261273 -62338657 - MARNA DNA Mariner -343 243 201 957 178 61 20 chrX 100261552 100261749 -62338181 + MER3 DNA MER1_type 5 209 0 1850 181 48 13 chrX 100462202 100462594 -62137336 + L1MB8 LINE L1 5772 6177 -1 192 275 80 80 chrX 100462594 100462732 -62137198 - L2 LINE L2 -239 3033 2896 183 162 27 187 chrX 100462817 100462904 -62137026 + MIR SINE MIR 70 154 -60 25 0 0 0 chrX 100463013 100463038 -62136892 + AT_rich Low_complexity Low_complexity 1 25 0 235 235 0 0 chrX 100463134 100463185 -62136745 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 460 145 3 9 chrX 100463279 100463398 -62136532 + L1MC4a LINE L1 5309 5423 -742 1459 228 52 43 chrX 100463982 100464443 -62135487 + LTR40c LTR ERVL 1 465 0 354 238 43 61 chrX 100464521 100464685 -62135245 + MER113 DNA MER1_type? 44 204 -317 2005 127 3 33 chrX 100465319 100465626 -62134304 + AluSx SINE Alu 1 298 -14 645 80 0 0 chrX 100465629 100465717 -62134213 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 2420 61 7 0 chrX 100466375 100466670 -62133260 - AluY SINE Alu -14 297 1 204 226 145 16 chrX 100466790 100466852 -62133078 - MIR SINE MIR -69 193 124 294 217 0 0 chrX 100467030 100467099 -62132831 - L1ME4a LINE L1 -42 6079 6011 251 277 28 11 chrX 100467257 100467434 -62132496 + L1M4 LINE L1 2173 2352 -3794 207 220 0 20 chrX 100467767 100467817 -62132113 + CT-rich Low_complexity Low_complexity 2 50 0 254 274 0 27 chrX 100468140 100468213 -62131717 + G-rich Low_complexity Low_complexity 4 74 0 225 0 0 0 chrX 100469439 100469464 -62130466 + (TC)n Simple_repeat Simple_repeat 2 26 0 1925 146 16 7 chrX 100469469 100469777 -62130153 - AluJo SINE Alu 0 312 2 268 94 57 38 chrX 100469830 100469883 -62130047 + MIR SINE MIR 188 241 -21 234 169 68 34 chrX 100470039 100470098 -62129832 + MIR SINE MIR 114 174 -88 506 320 73 14 chrX 100470108 100470585 -62129345 + L1MC4a LINE L1 5425 5653 -468 23 65 0 16 chrX 100471010 100471038 -62128892 + AT_rich Low_complexity Low_complexity 1 28 -33 7239 38 8 1 chrX 100471038 100472207 -62127723 + L1PA6 LINE L1 4977 6151 -3 23 65 0 16 chrX 100472207 100472240 -62127690 + AT_rich Low_complexity Low_complexity 28 61 0 351 0 0 0 chrX 100473786 100473825 -62126105 + (TG)n Simple_repeat Simple_repeat 2 40 0 208 165 73 18 chrX 100473829 100473938 -62125992 + (TA)n Simple_repeat Simple_repeat 1 115 0 318 273 104 32 chrX 100474062 100474282 -62125648 - L1ME LINE L1 -366 5991 5756 2713 106 120 0 chrX 100475253 100475670 -62124260 + LTR24 LTR ERV1 1 467 0 361 281 170 8 chrX 100478182 100478417 -62121513 + L1ME4a LINE L1 5835 6107 -14 191 370 83 19 chrX 100479511 100479619 -62120311 + L2 LINE L2 3142 3256 -16 204 48 71 24 chrX 100479728 100479770 -62120160 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2314 88 0 0 chrX 100479777 100480062 -62119868 - AluSg SINE Alu -24 286 2 182 313 95 56 chrX 100480135 100480314 -62119616 + MER5A DNA MER1_type 4 189 0 2584 94 59 15 chrX 100480452 100480858 -62119072 + MSTA LTR MaLR 3 426 -2 640 308 59 4 chrX 100481243 100481480 -62118450 - MIR SINE MIR 0 262 13 33 25 0 0 chrX 100481547 100481587 -62118343 + AT_rich Low_complexity Low_complexity 1 40 0 363 354 16 20 chrX 100482159 100482413 -62117517 - L2 LINE L2 -909 2405 2153 1915 143 0 17 chrX 100482646 100482940 -62116990 - AluJb SINE Alu -20 292 4 2117 258 80 12 chrX 100483028 100483977 -62115953 + L1MEc LINE L1 2179 3134 -3081 1053 221 96 30 chrX 100484078 100484570 -62115360 + L1M4 LINE L1 823 1346 -5196 382 23 0 0 chrX 100484643 100484687 -62115243 - THE1B LTR MaLR -320 44 1 273 29 0 0 chrX 100485817 100485851 -62114079 + (TG)n Simple_repeat Simple_repeat 1 34 0 972 140 0 0 chrX 100485890 100486033 -62113897 + FLAM_C SINE Alu 1 143 0 306 133 0 111 chrX 100486033 100486123 -62113807 - L1M LINE L1 -847 5333 5254 39 0 0 0 chrX 100486123 100486162 -62113768 + AT_rich Low_complexity Low_complexity 1 39 0 718 257 20 0 chrX 100486168 100486370 -62113560 - L1ME LINE L1 -897 5485 5280 2715 217 27 6 chrX 100486389 100487238 -62112692 - L1M3d LINE L1 -5084 807 1 2873 230 47 56 chrX 100487240 100488253 -62111677 - L1ME LINE L1 -2985 3397 2394 2063 232 19 41 chrX 100488256 100488587 -62111343 + MER74A LTR ERVL 6 322 -236 306 0 0 0 chrX 100488587 100488621 -62111309 + (CA)n Simple_repeat Simple_repeat 1 34 0 2063 232 19 41 chrX 100488621 100488854 -62111076 + MER74A LTR ERVL 322 558 0 1101 232 54 20 chrX 100488854 100489409 -62110521 - L1ME LINE L1 -3984 2400 1735 398 286 107 22 chrX 100489457 100489635 -62110295 - L1MC/D LINE L1 -2011 5797 5605 489 272 115 9 chrX 100490095 100490359 -62109571 - L1MC4a LINE L1 -297 5824 5600 1080 167 0 0 chrX 100491367 100491535 -62108395 - FAM SINE Alu -7 168 1 184 238 24 0 chrX 100491536 100491578 -62108352 + MER5A DNA MER1_type 125 167 -22 258 183 40 8 chrX 100491979 100492105 -62107825 + (TA)n Simple_repeat Simple_repeat 2 131 0 273 230 0 0 chrX 100492169 100492243 -62107687 + (TA)n Simple_repeat Simple_repeat 2 75 0 297 0 0 0 chrX 100492243 100492276 -62107654 + (CA)n Simple_repeat Simple_repeat 2 34 0 285 217 0 14 chrX 100493474 100493543 -62106387 - L1ME4a LINE L1 -208 5913 5846 350 304 23 60 chrX 100495298 100495515 -62104415 - L1MC4a LINE L1 -607 5557 5349 347 249 113 80 chrX 100496685 100496898 -62103032 + MIR SINE MIR 9 228 -34 2543 171 11 69 chrX 100496906 100497468 -62102462 - L1M3e LINE L1 -6501 529 1 435 255 7 26 chrX 100497481 100497634 -62102296 + L1MEc LINE L1 2141 2290 -4106 440 176 0 33 chrX 100497640 100497731 -62102199 + MLT2B3 LTR ERVL 1 88 -466 2487 164 9 93 chrX 100497808 100498332 -62101598 + MLT2B3 LTR ERVL 75 554 0 527 215 10 75 chrX 100498333 100498404 -62101526 + L1MEc LINE L1 2252 2326 -3889 1769 97 0 59 chrX 100498404 100498456 -62101474 - L1PA15 LINE L1 -1 6164 6111 2575 58 0 0 chrX 100498456 100498767 -62101163 - AluY SINE Alu 0 311 1 1769 97 0 59 chrX 100498767 100499003 -62100927 - L1PA15 LINE L1 -54 6111 5893 527 215 10 75 chrX 100499003 100499131 -62100799 + L1MEc LINE L1 2326 2438 -3777 2835 130 0 2 chrX 100499131 100499569 -62100361 + L1MB3 LINE L1 5743 6179 -4 1127 221 73 34 chrX 100499580 100499992 -62099938 + L1MC5 LINE L1 7481 7908 -53 908 230 104 111 chrX 100500029 100500651 -62099279 + L1ME3A LINE L1 5538 6155 -15 229 224 118 0 chrX 100501098 100501183 -62098747 + L1ME LINE L1 5725 5819 -302 259 259 52 26 chrX 100501510 100501626 -62098304 - MIR SINE MIR -27 235 117 27 49 0 0 chrX 100501842 100501883 -62098047 + AT_rich Low_complexity Low_complexity 1 41 0 1906 186 16 16 chrX 100501964 100502340 -62097590 - MLT2D LTR ERVL 0 414 39 737 228 116 21 chrX 100502474 100502803 -62097127 + L1MEc LINE L1 2846 3205 -3010 389 167 14 111 chrX 100502771 100502915 -62097015 + L1M4 LINE L1 4546 4675 -1540 * 877 96 0 9 chrX 100502924 100503039 -62096891 + AluSq/x SINE Alu 1 114 -198 9273 136 40 10 chrX 100503039 100505685 -62094245 + L1MA2 LINE L1 3643 6373 0 347 281 96 27 chrX 100505715 100505861 -62094069 - L1ME3A LINE L1 -53 6117 5962 522 267 123 25 chrX 100505982 100506259 -62093671 - L1MC5 LINE L1 -453 7508 7205 240 226 0 0 chrX 100506395 100506457 -62093473 + (CATA)n Simple_repeat Simple_repeat 3 64 0 280 235 15 15 chrX 100506946 100507014 -62092916 - MIR SINE MIR -147 115 48 445 258 38 108 chrX 100507920 100508015 -62091915 + MLT1J LTR MaLR 3 103 -347 1502 153 97 0 chrX 100508015 100508283 -62091647 - AluJo SINE Alu -13 299 6 445 258 38 108 chrX 100508283 100508535 -62091395 + MLT1J LTR MaLR 103 295 -155 2446 44 34 0 chrX 100508583 100508880 -62091050 - AluY SINE Alu -4 307 1 585 309 55 9 chrX 100509232 100509652 -62090278 - L1ME3A LINE L1 -154 5967 5529 1844 249 59 75 chrX 100509717 100510664 -62089266 - L1ME3A LINE L1 -15 6155 5194 2107 108 10 7 chrX 100510664 100510961 -62088969 - AluSx SINE Alu -14 298 1 1844 249 59 75 chrX 100510961 100511516 -62088414 - L1ME3A LINE L1 -976 5194 4666 2081 124 3 0 chrX 100511516 100511815 -62088115 - AluSg SINE Alu -10 300 1 1844 249 59 75 chrX 100511815 100512074 -62087856 - L1ME3A LINE L1 -1504 4666 4404 2877 241 42 17 chrX 100512087 100513575 -62086355 - L1ME2 LINE L1 -9 6155 4631 321 239 42 84 chrX 100513576 100513743 -62086187 - L1ME3A LINE L1 -1833 4313 4154 21 0 0 0 chrX 100514694 100514715 -62085215 + GC_rich Low_complexity Low_complexity 1 21 0 441 95 0 0 chrX 100516150 100516213 -62083717 + (TA)n Simple_repeat Simple_repeat 2 64 0 183 283 150 0 chrX 100516444 100516504 -62083426 + MIR SINE MIR 129 197 -65 1118 186 127 16 chrX 100517252 100517559 -62082371 + MER58B DNA MER1_type 1 341 0 216 292 0 0 chrX 100518434 100518482 -62081448 + L2 LINE L2 3266 3313 0 711 235 9 33 chrX 100518832 100519045 -62080885 + L1MD2 LINE L1 16 223 -6173 1280 198 117 0 chrX 100519092 100519450 -62080480 + L1MD2 LINE L1 1927 2326 -4070 1910 29 0 4 chrX 100519466 100519696 -62080234 - L1PA6 LINE L1 -252 5902 5672 1120 71 0 19 chrX 100519696 100519850 -62080080 + L1PA7 LINE L1 6001 6152 -2 2066 248 71 19 chrX 100519860 100520682 -62079248 + L1MD2 LINE L1 2271 3134 -3081 2679 235 30 56 chrX 100520687 100521524 -62078406 + L1MD2 LINE L1 3566 4423 -1792 1265 213 124 33 chrX 100521524 100521952 -62077978 - MLT1C LTR MaLR 0 467 1 2679 235 30 56 chrX 100521952 100522383 -62077547 + L1MD2 LINE L1 4423 4901 -1314 1476 207 41 0 chrX 100522383 100522654 -62077276 - AluJo SINE Alu -30 282 1 2679 235 30 56 chrX 100522654 100522999 -62076931 + L1MD2 LINE L1 4901 5253 -962 2409 88 0 7 chrX 100523077 100523384 -62076546 + AluSg SINE Alu 1 305 -5 677 282 34 63 chrX 100523507 100523858 -62076072 + L1MDa LINE L1 20 360 -6180 1700 189 86 12 chrX 100523861 100524269 -62075661 + L1MD2 LINE L1 5936 6373 -55 1026 195 17 48 chrX 100524278 100524389 -62075541 - L1MB8 LINE L1 -5 6173 6060 2102 88 3 11 chrX 100524389 100524672 -62075258 - AluSc SINE Alu -26 283 3 1026 195 17 48 chrX 100524672 100524852 -62075078 - L1MB8 LINE L1 -118 6060 5891 627 96 0 0 chrX 100524953 100525047 -62074883 - L1MB3 LINE L1 -12 6171 6078 2278 171 0 8 chrX 100525048 100525438 -62074492 + MER66B LTR ERV1 5 391 -95 374 41 0 0 chrX 100525438 100525487 -62074443 - MLT2A1 LTR ERVL 0 444 396 12823 106 12 1 chrX 100525489 100526239 -62073691 + MER66B-int LTR ERV1 4804 5544 -1132 192 40 0 0 chrX 100526239 100526264 -62073666 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 12823 106 12 1 chrX 100526264 100527365 -62072565 + MER66B-int LTR ERV1 5544 6676 0 2904 156 17 6 chrX 100527365 100527846 -62072084 + MER66B LTR ERV1 1 486 0 293 140 0 0 chrX 100527846 100527896 -62072034 - L1MB3 LINE L1 -100 6083 6034 625 299 71 73 chrX 100528278 100528856 -62071074 - L2 LINE L2 -581 2733 2157 457 306 21 31 chrX 100528873 100529066 -62070864 + MIR SINE MIR 1 191 -71 530 280 73 26 chrX 100529468 100529700 -62070230 + L1M4 LINE L1 13 255 -6287 506 206 29 7 chrX 100529765 100529987 -62069943 + L1M4 LINE L1 1906 2276 -4370 1211 244 9 9 chrX 100530032 100530377 -62069553 + L1M4 LINE L1 4765 5109 -1535 18713 169 12 15 chrX 100530509 100530747 -62069183 + HERVL74 LTR ERVL 1177 1414 -4271 1734 166 25 0 chrX 100530747 100531024 -62068906 + AluJo SINE Alu 6 289 -23 18713 169 12 15 chrX 100531024 100534126 -62065804 + HERVL74 LTR ERVL 1414 4505 -1180 2977 234 30 7 chrX 100534126 100535038 -62064892 + L1MB5 LINE L1 3537 4469 -2175 334 179 0 48 chrX 100535038 100535122 -62064808 + MSTB1 LTR MaLR 1 80 -352 2843 212 12 36 chrX 100535127 100535341 -62064589 + L1ME4a LINE L1 5036 5253 -1391 1415 186 49 98 chrX 100535341 100535749 -62064181 - MLT1B LTR MaLR 0 390 3 2843 212 12 36 chrX 100535749 100536349 -62063581 + L1ME4a LINE L1 5253 5831 -813 1285 207 4 0 chrX 100536347 100536613 -62063317 + L1MB5 LINE L1 4525 4791 -1853 * 768 120 17 0 chrX 100536619 100536736 -62063194 - FLAM_C SINE Alu -19 124 6 185 59 59 0 chrX 100536776 100536810 -62063120 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 41715 42 2 2 chrX 100536811 100542947 -62056983 - L1PA4 LINE L1 -18 6137 2 1005 277 48 18 chrX 100542951 100543443 -62056487 + HERVL74 LTR ERVL 5071 5670 -15 2552 166 22 7 chrX 100543449 100543902 -62056028 + MER74C LTR ERVL 1 460 0 1690 168 21 0 chrX 100543903 100544279 -62055651 + L1MB5 LINE L1 5458 5841 -803 * 3900 143 6 7 chrX 100544256 100545309 -62054621 + L1PA14 LINE L1 5420 6656 -3 4276 176 33 2 chrX 100545318 100546133 -62053797 + L1MB5 LINE L1 5817 6656 -16 1489 212 0 4 chrX 100546309 100546583 -62053347 + AluJo SINE Alu 3 275 -37 306 0 0 0 chrX 100546588 100546622 -62053308 + (CA)n Simple_repeat Simple_repeat 1 34 0 553 252 13 0 chrX 100546805 100546956 -62052974 + L1ME4a LINE L1 6155 6307 -369 441 0 0 0 chrX 100547867 100547916 -62052014 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chrX 100548170 100548192 -62051738 + AT_rich Low_complexity Low_complexity 1 22 0 301 339 12 12 chrX 100550906 100551074 -62048856 + GA-rich Low_complexity Low_complexity 5 172 0 316 321 74 37 chrX 100551693 100551908 -62048022 + L1ME4a LINE L1 6344 6566 -53 240 293 0 0 chrX 100552729 100552787 -62047143 + MIR SINE MIR 37 94 -114 353 303 0 49 chrX 100552898 100553040 -62046890 + MER5A DNA MER1_type 2 136 -53 2217 173 32 46 chrX 100553090 100553304 -62046626 - L1M4 LINE L1 0 5734 5519 1894 169 3 17 chrX 100553304 100553659 -62046271 - L1MB7 LINE L1 -9 6175 5826 2217 173 32 46 chrX 100553659 100554125 -62045805 - L1M4 LINE L1 -215 5519 2308 385 252 91 7 chrX 100554306 100554449 -62045481 - MLT1I LTR MaLR 0 409 255 340 331 40 14 chrX 100554627 100554775 -62045155 - MIR SINE MIR -96 166 15 2251 122 0 0 chrX 100554791 100555095 -62044835 - AluSx SINE Alu -8 304 1 511 288 18 57 chrX 100556168 100556501 -62043429 + L1MCb LINE L1 423 742 -5680 307 307 7 36 chrX 100556751 100556891 -62043039 + L1MCb LINE L1 814 949 -5474 769 238 33 4 chrX 100557006 100557279 -62042651 + L1MCb LINE L1 1177 1457 -4966 3738 237 119 22 chrX 100557290 100558166 -62041764 + L1M4b LINE L1 20 1030 -5829 2108 116 7 3 chrX 100558166 100558458 -62041472 + AluSx SINE Alu 1 293 -19 3738 237 119 22 chrX 100558458 100558694 -62041236 + L1M4b LINE L1 1030 1241 -5618 1264 228 26 92 chrX 100558816 100559709 -62040221 + L1M4b LINE L1 2643 3456 -3501 * 2220 222 39 18 chrX 100559695 100560417 -62039513 + L1M4b LINE L1 4671 5407 -1550 936 143 19 91 chrX 100560406 100560671 -62039259 - L1M4 LINE L1 -1332 4814 4569 * 1350 237 86 19 chrX 100560772 100561249 -62038681 + L1MD3 LINE L1 4908 5416 -1541 212 59 29 0 chrX 100561277 100561311 -62038619 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3569 84 4 6 chrX 100561311 100561833 -62038097 - L1PA8 LINE L1 -24 6148 5628 5340 205 114 55 chrX 100561843 100564398 -62035532 + L1MD3 LINE L1 5427 8307 -499 560 236 0 24 chrX 100564398 100564525 -62035405 + MLT1F1 LTR MaLR 1 124 -443 5340 205 114 55 chrX 100564525 100565057 -62034873 + L1MD3 LINE L1 8307 8806 0 251 234 100 25 chrX 100565351 100565515 -62034415 - L1MC/D LINE L1 -339 5782 5729 186 359 62 0 chrX 100565545 100565609 -62034321 - L2 LINE L2 -68 3204 3137 759 250 13 0 chrX 100565953 100566105 -62033825 + AluJb SINE Alu 136 289 -23 342 0 0 0 chrX 100567620 100567658 -62032272 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chrX 100567899 100567930 -62032000 + AT_rich Low_complexity Low_complexity 1 31 0 1685 225 62 31 chrX 100568210 100568663 -62031267 + L1MD2 LINE L1 5681 6147 -212 301 276 50 30 chrX 100571827 100572026 -62027904 - L1M4 LINE L1 -3794 2352 2150 271 304 61 36 chrX 100572023 100572270 -62027660 + L1ME4a LINE L1 5846 6098 -23 * 401 310 32 13 chrX 100573611 100573769 -62026161 + MER5A DNA MER1_type 28 188 -1 285 304 20 20 chrX 100575213 100575315 -62024615 + MIR SINE MIR 13 114 -148 342 0 0 0 chrX 100575427 100575465 -62024465 + (CAT)n Simple_repeat Simple_repeat 1 38 0 259 286 126 17 chrX 100575639 100575758 -62024172 + MIR SINE MIR 123 254 -8 262 156 31 0 chrX 100575766 100575830 -62024100 + (CAT)n Simple_repeat Simple_repeat 3 68 0 324 244 51 71 chrX 100576167 100576221 -62023709 + L1ME4a LINE L1 5926 5980 -141 231 61 0 0 chrX 100576221 100576254 -62023676 + (CA)n Simple_repeat Simple_repeat 2 34 0 324 244 51 71 chrX 100576254 100576396 -62023534 + L1ME4a LINE L1 5980 6118 -3 287 196 36 0 chrX 100576840 100576896 -62023034 - L2 LINE L2 0 3272 3215 295 229 94 21 chrX 100577345 100577441 -62022489 - L2 LINE L2 -17 3296 3194 2541 192 104 16 chrX 100577453 100578067 -62021863 - L1ME2 LINE L1 -1 6163 5496 788 213 83 45 chrX 100578054 100578316 -62021614 + L1MC4 LINE L1 7555 7912 -130 * 194 0 39 0 chrX 100578316 100578342 -62021588 + (TA)n Simple_repeat Simple_repeat 2 28 0 788 213 83 45 chrX 100578342 100578478 -62021452 + L1MC4 LINE L1 7912 8041 -1 219 213 75 106 chrX 100579361 100579455 -62020475 + MIR SINE MIR 96 186 -76 285 318 135 2 chrX 100579507 100579849 -62020081 - L2 LINE L2 -655 2659 2196 1982 163 148 35 chrX 100579861 100580315 -62019615 + MLT1D LTR MaLR 1 505 0 626 296 79 12 chrX 100580383 100580623 -62019307 + MIR SINE MIR 1 256 -6 2076 90 47 13 chrX 100580825 100581124 -62018806 + AluSc SINE Alu 1 309 0 1805 131 21 25 chrX 100581146 100581464 -62018466 + AluSx SINE Alu 1 317 0 270 0 0 0 chrX 100581482 100581512 -62018418 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 369 0 0 0 chrX 100581511 100581552 -62018378 + (TG)n Simple_repeat Simple_repeat 2 42 0 366 184 0 0 chrX 100583746 100583822 -62016108 + GA-rich Low_complexity Low_complexity 1 76 0 200 274 0 36 chrX 100583935 100584019 -62015911 + T-rich Low_complexity Low_complexity 1 81 0 313 270 130 32 chrX 100584181 100584366 -62015564 + L1ME4a LINE L1 5901 6103 -18 2385 55 14 3 chrX 100584366 100584659 -62015271 + AluY SINE Alu 1 296 -15 384 22 0 0 chrX 100585534 100585579 -62014351 + (TG)n Simple_repeat Simple_repeat 2 46 0 302 190 35 0 chrX 100585603 100585661 -62014269 + L2 LINE L2 3254 3313 0 237 297 194 12 chrX 100585652 100585817 -62014113 - MIR SINE MIR -58 204 10 * 328 329 80 14 chrX 100586119 100586332 -62013598 + L1ME LINE L1 5319 5545 -576 * 1315 186 20 22 chrX 100586331 100586710 -62013220 - L1MC/D LINE L1 -745 5401 5175 203 179 0 0 chrX 100586710 100586749 -62013181 + T-rich Low_complexity Low_complexity 1 39 0 583 240 15 36 chrX 100586765 100586779 -62013151 - L1MC/D LINE L1 -946 5200 5187 3845 24 5 0 chrX 100586779 100587200 -62012730 - L1PA3 LINE L1 -3 6152 5730 583 240 15 36 chrX 100587200 100587381 -62012549 - L1MC/D LINE L1 -959 5187 5009 1850 261 32 4 chrX 100587532 100588026 -62011904 - L1MC/D LINE L1 -1894 4252 3745 2201 162 35 56 chrX 100588032 100588520 -62011410 + MLT2A2 LTR ERVL 1 466 -88 2291 94 0 0 chrX 100588520 100588806 -62011124 + AluSg SINE Alu 1 286 -24 2201 162 35 56 chrX 100588806 100588894 -62011036 + MLT2A2 LTR ERVL 466 554 0 347 236 28 19 chrX 100588894 100589000 -62010930 - L1 LINE L1 -2433 3713 3607 887 226 157 0 chrX 100589000 100589235 -62010695 - MLT1E2 LTR MaLR 0 626 355 21 57 0 0 chrX 100589485 100589520 -62010410 + AT_rich Low_complexity Low_complexity 1 35 0 259 232 0 18 chrX 100589569 100589625 -62010305 - L1MC4 LINE L1 -139 7903 7849 256 274 0 0 chrX 100589625 100589676 -62010254 + MLT1E2 LTR MaLR 1 51 -603 2493 178 36 11 chrX 100589715 100590188 -62009742 + MLT1E2 LTR MaLR 138 622 -4 1669 249 89 18 chrX 100590195 100590569 -62009361 - L1MC4 LINE L1 -193 7849 7422 2359 81 0 0 chrX 100590569 100590867 -62009063 - AluY SINE Alu -13 298 1 1669 249 89 18 chrX 100590867 100591045 -62008885 - L1MC4 LINE L1 -620 7422 7258 2143 226 48 24 chrX 100591052 100591640 -62008290 - L1MC4 LINE L1 -953 7089 6488 246 174 0 0 chrX 100592635 100592681 -62007249 + (CA)n Simple_repeat Simple_repeat 2 47 0 216 0 0 0 chrX 100593450 100593474 -62006456 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1631 127 0 69 chrX 100593475 100593751 -62006179 - AluJb SINE Alu -55 257 1 266 264 55 11 chrX 100594575 100594666 -62005264 + MERVL LTR ERVL 863 957 -4528 376 313 18 0 chrX 100594680 100594792 -62005138 + L2 LINE L2 2910 3023 -290 364 276 129 0 chrX 100594802 100594849 -62005081 + L2 LINE L2 3175 3215 -98 198 0 0 0 chrX 100594849 100594871 -62005059 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 364 276 129 0 chrX 100594871 100594939 -62004991 + L2 LINE L2 3215 3305 -8 51 42 0 0 chrX 100594939 100595011 -62004919 + AT_rich Low_complexity Low_complexity 1 72 0 293 360 45 0 chrX 100595029 100595207 -62004723 + MERVL LTR ERVL 1066 1251 -4403 255 209 15 15 chrX 100595212 100595279 -62004651 + L1MC4 LINE L1 6664 6730 -1312 981 278 62 24 chrX 100595584 100596002 -62003928 + MLT1J1 LTR MaLR 3 436 -10 2356 128 66 43 chrX 100596033 100596555 -62003375 + MLT2A2 LTR ERVL 1 554 0 331 289 100 0 chrX 100596778 100596891 -62003039 - MIR SINE MIR -63 145 33 2988 127 8 29 chrX 100596923 100597404 -62002526 - HSMAR2 DNA Mariner -829 473 3 2190 192 28 22 chrX 100597405 100597868 -62002062 - L1MB7 LINE L1 -264 5920 5455 2611 240 64 26 chrX 100597905 100598919 -62001011 + L1ME1 LINE L1 5145 6170 -8 15134 176 12 4 chrX 100598985 100602510 -61997420 - L1PA15 LINE L1 0 6816 3263 12796 182 38 9 chrX 100602510 100605280 -61994650 - L1PA15 LINE L1 -3930 2867 2 1844 163 77 34 chrX 100605372 100605563 -61994367 - MLT1A1 LTR MaLR 0 365 184 2291 80 10 17 chrX 100605563 100605864 -61994066 - AluSc SINE Alu -10 299 1 1844 163 77 34 chrX 100605864 100606022 -61993908 - MLT1A1 LTR MaLR -181 184 1 248 253 148 14 chrX 100607389 100607506 -61992424 + MIR3 SINE MIR 3 140 -102 285 256 187 36 chrX 100607524 100607743 -61992187 + MER112 DNA MER1_type 2 253 -7 395 219 88 9 chrX 100607973 100608087 -61991843 + MIR SINE MIR 89 211 -51 201 291 0 18 chrX 100608284 100608339 -61991591 + (CA)n Simple_repeat Simple_repeat 2 55 0 253 278 62 31 chrX 100608339 100608436 -61991494 - MER5A DNA MER1_type 0 189 90 279 196 10 59 chrX 100609818 100609920 -61990010 + C-rich Low_complexity Low_complexity 3 99 0 27 0 0 0 chrX 100610072 100610099 -61989831 + GC_rich Low_complexity Low_complexity 1 27 0 674 170 21 14 chrX 100610648 100610789 -61989141 + MER96B DNA MER1_type? 41 182 -235 2407 22 22 0 chrX 100610948 100611224 -61988706 - AluY SINE Alu -29 282 1 1649 230 73 36 chrX 100611259 100611863 -61988067 - L1MC5 LINE L1 -31 7930 7305 648 306 84 29 chrX 100611955 100612302 -61987628 - LTR16A1 LTR ERVL 0 457 92 1528 156 51 4 chrX 100612307 100612412 -61987518 + AluJo SINE Alu 13 112 -200 387 60 0 0 chrX 100612412 100612462 -61987468 + (CA)n Simple_repeat Simple_repeat 1 50 0 1528 156 51 4 chrX 100612462 100612612 -61987318 + AluJo SINE Alu 112 280 -32 562 238 25 0 chrX 100612665 100612787 -61987143 + MER45 DNA AcHobo 1 125 -1456 434 77 0 0 chrX 100613041 100613093 -61986837 + Alu SINE Alu 6 57 -261 296 238 63 0 chrX 100613156 100613219 -61986711 + MER21A LTR ERV1 4 70 -861 2365 82 7 0 chrX 100613321 100613614 -61986316 + AluY SINE Alu 1 295 -16 280 106 43 0 chrX 100613569 100613616 -61986314 + Alu SINE Alu 249 297 -4 * 646 184 7 58 chrX 100613615 100613841 -61986089 + MER21A LTR ERV1 34 341 -366 1104 194 165 43 chrX 100613841 100614279 -61985651 - MER66A LTR ERV1 0 478 98 2593 168 14 85 chrX 100614317 100614988 -61984942 + MER21A LTR ERV1 210 814 -117 285 29 0 0 chrX 100615007 100615041 -61984889 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1229 102 51 0 chrX 100615622 100615799 -61984131 + AluSg/x SINE Alu 123 308 -2 2099 119 3 13 chrX 100615856 100616178 -61983752 + AluSx SINE Alu 1 312 0 2408 250 24 25 chrX 100616178 100617582 -61982348 + L1M4 LINE L1 2479 4435 -1711 1836 156 17 13 chrX 100617612 100617913 -61982017 + AluJo SINE Alu 1 302 -10 1261 232 36 33 chrX 100617914 100618458 -61981472 + L1M4c LINE L1 2125 2673 -3709 4816 225 29 46 chrX 100619500 100619836 -61980094 + L1M4c LINE L1 2656 2996 -3386 2270 91 0 13 chrX 100619836 100620134 -61979796 - AluY SINE Alu -17 294 1 4816 225 29 46 chrX 100620134 100620856 -61979074 + L1M4c LINE L1 2996 3686 -2696 2416 75 0 7 chrX 100620856 100621151 -61978779 + AluY SINE Alu 1 293 -18 4816 225 29 46 chrX 100621151 100621532 -61978398 + L1M4c LINE L1 3686 4072 -2310 1603 162 69 56 chrX 100621535 100621911 -61978019 + L1MB7 LINE L1 5743 6123 -61 819 173 0 0 chrX 100621911 100622044 -61977886 - AluSg/x SINE Alu -12 300 168 576 176 9 4 chrX 100622044 100622163 -61977767 - L1M4 LINE L1 -847 5299 5184 615 278 9 23 chrX 100622163 100622379 -61977551 - L1MC5 LINE L1 -1138 6823 6611 2399 71 3 0 chrX 100622500 100622795 -61977135 + AluY SINE Alu 1 296 -15 1140 124 0 0 chrX 100622795 100622973 -61976957 + (TA)n Simple_repeat Simple_repeat 2 179 0 1028 249 12 116 chrX 100622985 100623057 -61976873 - L1MC5 LINE L1 -1841 5967 5889 483 219 60 102 chrX 100623057 100623272 -61976658 + MER3 DNA MER1_type 4 209 0 1028 249 12 116 chrX 100623272 100623322 -61976608 - L1MC5 LINE L1 -1919 5889 5835 1772 173 0 0 chrX 100623322 100623606 -61976324 + AluJb SINE Alu 1 284 -28 1028 249 12 116 chrX 100623606 100623618 -61976312 - L1MC5 LINE L1 -1973 5835 5823 228 67 0 0 chrX 100623618 100623648 -61976282 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 1028 249 12 116 chrX 100623648 100623985 -61975945 - L1MC5 LINE L1 -1985 5823 5546 2662 171 27 25 chrX 100623985 100624470 -61975460 - MER66B LTR ERV1 0 486 1 1028 249 12 116 chrX 100624470 100624496 -61975434 - L1MC5 LINE L1 -2262 5546 5519 1802 143 10 0 chrX 100624600 100624893 -61975037 - L1MA4 LINE L1 -6 6294 5999 393 273 109 55 chrX 100624915 100625171 -61974759 - L1MC5 LINE L1 -789 5357 5088 1599 167 3 67 chrX 100625576 100625713 -61974217 + AluJo SINE Alu 1 110 -202 7560 57 0 8 chrX 100625713 100626928 -61973002 + L1PA5 LINE L1 4947 6154 0 1599 167 3 67 chrX 100626928 100627089 -61972841 + AluJo SINE Alu 110 280 -32 504 0 0 0 chrX 100627109 100627165 -61972765 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 239 77 0 26 chrX 100627166 100627205 -61972725 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 246 206 16 16 chrX 100627707 100627770 -61972160 - L1ME4a LINE L1 -177 5944 5882 209 108 27 0 chrX 100627883 100627920 -61972010 + (CA)n Simple_repeat Simple_repeat 2 39 0 212 0 36 0 chrX 100627920 100627948 -61971982 + (GA)n Simple_repeat Simple_repeat 2 30 0 2364 95 0 0 chrX 100628476 100628772 -61971158 - AluY SINE Alu -15 296 1 995 191 6 0 chrX 100628790 100628947 -61970983 - FAM SINE Alu -17 158 1 1758 193 0 0 chrX 100628952 100629253 -61970677 - AluJo SINE Alu -11 301 1 24 32 0 0 chrX 100629356 100629387 -61970543 + AT_rich Low_complexity Low_complexity 1 31 0 884 156 8 0 chrX 100629470 100629598 -61970332 - FLAM_C SINE Alu -4 129 1 221 263 81 30 chrX 100629912 100630011 -61969919 + MIR SINE MIR 89 192 -70 4019 169 30 14 chrX 100630354 100631093 -61968837 - L1MB3 LINE L1 -2 6181 5431 228 321 136 0 chrX 100631100 100631240 -61968690 + MIR SINE MIR 79 237 -25 220 339 73 18 chrX 100631470 100631579 -61968351 + MIR3 SINE MIR 8 122 -86 22 0 0 0 chrX 100631752 100631774 -61968156 + AT_rich Low_complexity Low_complexity 1 22 0 2003 94 54 60 chrX 100631774 100631887 -61968043 + L1MA8 LINE L1 5915 6027 -264 1970 107 30 40 chrX 100631887 100632185 -61967745 + AluSx SINE Alu 1 295 -17 2003 94 54 60 chrX 100632185 100632423 -61967507 + L1MA8 LINE L1 6027 6264 -27 3680 150 27 17 chrX 100632429 100633064 -61966866 + L1MA7 LINE L1 5634 6274 -17 817 197 34 132 chrX 100633065 100633481 -61966449 + L1MC5 LINE L1 6854 7228 -733 534 240 91 16 chrX 100633488 100633781 -61966149 + L1MC5 LINE L1 7223 7406 -402 183 42 0 0 chrX 100633816 100633840 -61966090 + (GA)n Simple_repeat Simple_repeat 2 25 0 1728 239 45 16 chrX 100633892 100634382 -61965548 + L1ME3A LINE L1 5416 5919 -251 2538 78 0 0 chrX 100635017 100635325 -61964605 + AluY SINE Alu 1 308 -3 186 359 19 9 chrX 100635351 100635457 -61964473 + MIR SINE MIR 55 161 -101 722 153 53 24 chrX 100635561 100635731 -61964199 + MIR SINE MIR 77 251 -11 759 195 14 122 chrX 100636846 100637250 -61962680 + L1MC4 LINE L1 6867 7225 -799 183 184 0 0 chrX 100637427 100637465 -61962465 + (CATA)n Simple_repeat Simple_repeat 2 39 0 3009 215 38 52 chrX 100637670 100638389 -61961541 + L1MD1 LINE L1 4525 5230 -936 2467 72 0 0 chrX 100638389 100638409 -61961521 - AluY SINE Alu -5 306 287 480 18 0 0 chrX 100638409 100638466 -61961464 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 2467 72 0 0 chrX 100638466 100638749 -61961181 - AluY SINE Alu -23 288 3 3009 215 38 52 chrX 100638749 100639068 -61960862 + L1MD1 LINE L1 5230 5552 -614 1019 48 0 0 chrX 100639068 100639193 -61960737 + AluY SINE Alu 176 300 -11 346 211 56 117 chrX 100639201 100639414 -61960516 + L1MD1 LINE L1 5894 6093 -149 321 244 39 87 chrX 100639352 100639479 -61960451 + L1MA10 LINE L1 6172 6292 -42 * 353 250 23 0 chrX 100640420 100640508 -61959422 + L1ME LINE L1 5501 5590 -531 260 317 83 7 chrX 100640752 100640897 -61959033 - MIR SINE MIR -57 205 50 2655 166 29 29 chrX 100640994 100641483 -61958447 + LTR22B LTR ERVK 1 489 -3 291 317 97 16 chrX 100641963 100642149 -61957781 - MIR SINE MIR -12 250 50 986 214 21 29 chrX 100642169 100642407 -61957523 + MER106A DNA MER1_type 1 236 0 25 0 0 0 chrX 100642691 100642716 -61957214 + AT_rich Low_complexity Low_complexity 1 25 0 2480 61 0 0 chrX 100642783 100643079 -61956851 - AluY SINE Alu -15 296 1 428 299 8 0 chrX 100643301 100643428 -61956502 + MIR SINE MIR 25 152 -110 2613 58 0 0 chrX 100643435 100643746 -61956184 + AluY SINE Alu 1 311 0 899 256 42 36 chrX 100644009 100644481 -61955449 + L1MDa LINE L1 2079 2553 -3987 2265 276 62 34 chrX 100644501 100645262 -61954668 + MER21B LTR ERV1 13 794 -69 1061 250 39 33 chrX 100645311 100645609 -61954321 - L1M4 LINE L1 -3561 2585 2283 1654 160 45 77 chrX 100645609 100645984 -61953946 + MLT1A1 LTR MaLR 3 365 0 1061 250 39 33 chrX 100645984 100646049 -61953881 - L1M4 LINE L1 -3863 2283 2220 249 181 56 14 chrX 100646077 100646149 -61953781 - L1P5 LINE L1 -717 5434 5360 981 151 7 0 chrX 100646152 100646304 -61953626 - AluJb SINE Alu -23 289 137 288 261 36 80 chrX 100646520 100646658 -61953272 - L1ME LINE L1 -522 5599 5468 459 298 43 0 chrX 100646960 100647121 -61952809 + L1ME LINE L1 5529 5696 -425 2111 78 42 3 chrX 100647128 100647441 -61952489 - AluY SINE Alu 0 311 1 225 65 0 0 chrX 100647572 100647603 -61952327 + (GA)n Simple_repeat Simple_repeat 2 32 0 1706 168 0 65 chrX 100648002 100648311 -61951619 - AluJb SINE Alu -23 289 1 325 333 48 21 chrX 100648377 100648563 -61951367 + L1MC/D LINE L1 5630 5820 -1988 189 107 0 0 chrX 100649512 100649540 -61950390 + (A)n Simple_repeat Simple_repeat 1 28 0 2190 101 16 13 chrX 100649543 100649850 -61950080 + AluSg1 SINE Alu 1 308 -1 889 137 0 0 chrX 100649964 100650133 -61949797 - FLAM_C SINE Alu 0 169 1 253 338 108 0 chrX 100650574 100650707 -61949223 + MIR SINE MIR 44 191 -63 2553 42 7 3 chrX 100651508 100651814 -61948116 + AluY SINE Alu 2 308 -3 1219 246 68 25 chrX 100651847 100652424 -61947506 + LTR29 LTR ERV1 1 591 -4 1238 161 8 36 chrX 100652523 100652771 -61947159 + LTR1B LTR ERV1 1 241 -585 456 174 37 28 chrX 100652775 100652884 -61947046 + LTR1B LTR ERV1 717 826 0 1800 154 20 3 chrX 100652892 100653191 -61946739 + AluJb SINE Alu 1 304 -8 406 313 95 6 chrX 100653390 100653569 -61946361 - MER74B LTR ERVL -75 547 353 1293 234 47 17 chrX 100653747 100654046 -61945884 - MER74B LTR ERVL -254 368 61 2394 69 0 0 chrX 100654051 100654339 -61945591 + AluY SINE Alu 5 292 -19 459 0 0 0 chrX 100654351 100654402 -61945528 + (TG)n Simple_repeat Simple_repeat 2 52 0 2113 115 0 3 chrX 100654413 100654709 -61945221 + AluSg SINE Alu 1 295 -15 255 103 0 0 chrX 100654710 100654749 -61945181 + (CA)n Simple_repeat Simple_repeat 2 40 0 1690 92 116 63 chrX 100655286 100655409 -61944521 + AluSq SINE Alu 1 116 -197 2433 83 0 3 chrX 100655409 100655721 -61944209 + AluY SINE Alu 1 311 0 1690 92 116 63 chrX 100655721 100655881 -61944049 + AluSq SINE Alu 116 299 -14 230 352 40 16 chrX 100656074 100656199 -61943731 - MIR SINE MIR -79 183 56 203 188 0 16 chrX 100656206 100656270 -61943660 + (TA)n Simple_repeat Simple_repeat 1 63 0 359 308 38 0 chrX 100656270 100656429 -61943501 - L1M4 LINE L1 -1491 4655 4491 28 48 0 0 chrX 100656495 100656537 -61943393 + AT_rich Low_complexity Low_complexity 1 42 0 2110 110 4 0 chrX 100656613 100656914 -61943016 - AluSx SINE Alu 0 302 1 893 213 0 0 chrX 100656943 100657103 -61942827 - AluJb SINE Alu -17 295 136 2054 97 0 14 chrX 100657221 100657543 -61942387 + AluSx SINE Alu 1 318 0 1807 128 0 52 chrX 100657675 100657980 -61941950 - AluSx SINE Alu 0 312 24 544 305 19 29 chrX 100658650 100658860 -61941070 + L1MC4a LINE L1 5354 5561 -2247 604 255 37 33 chrX 100658863 100659050 -61940880 + MLT1D LTR MaLR 2 187 -318 2134 107 3 3 chrX 100659050 100659340 -61940590 + AluSc SINE Alu 1 290 -19 2012 72 30 4 chrX 100659344 100659607 -61940323 + AluSc SINE Alu 1 270 -39 604 255 37 33 chrX 100659607 100659657 -61940273 + MLT1D LTR MaLR 189 245 -260 523 90 45 0 chrX 100659667 100659756 -61940174 + GA-rich Low_complexity Low_complexity 1 93 0 1045 216 72 101 chrX 100659756 100660062 -61939868 + MLT1D LTR MaLR 171 505 0 227 184 0 0 chrX 100660062 100660100 -61939830 + L1MC4a LINE L1 5559 5596 -2212 501 282 55 18 chrX 100660103 100660376 -61939554 + L1MC4a LINE L1 5700 5982 -1826 * 5019 232 96 41 chrX 100660361 100661339 -61938591 + L1MDa LINE L1 1 924 -5616 2605 30 7 0 chrX 100661339 100661638 -61938292 - AluY SINE Alu -10 301 1 5019 232 96 41 chrX 100661638 100662013 -61937917 + L1MDa LINE L1 924 1277 -5263 762 194 0 8 chrX 100662013 100662142 -61937788 + FLAM_A SINE Alu 2 129 -4 5019 232 96 41 chrX 100662142 100662964 -61936966 + L1MDa LINE L1 1277 2250 -4290 315 214 126 19 chrX 100665046 100665149 -61934781 - MIR SINE MIR -50 212 99 27 39 0 19 chrX 100665260 100665279 -61934651 + AT_rich Low_complexity Low_complexity 1 19 -32 1457 142 57 79 chrX 100665279 100665595 -61934335 - AluJo SINE Alu -3 309 1 27 39 0 19 chrX 100665595 100665627 -61934303 + AT_rich Low_complexity Low_complexity 19 51 0 2313 83 27 0 chrX 100665656 100665957 -61933973 - AluY SINE Alu -2 309 1 498 76 0 0 chrX 100666106 100666172 -61933758 + Alu SINE Alu 238 303 -7 181 231 0 39 chrX 100667498 100667550 -61932380 + L2 LINE L2 2234 2283 -1031 516 292 45 69 chrX 100668029 100668361 -61931569 + L2 LINE L2 2986 3309 -4 351 346 33 33 chrX 100668489 100668671 -61931259 - MER5A DNA MER1_type 0 189 8 1621 198 40 0 chrX 100668906 100669235 -61930695 + MER74A LTR ERVL 28 369 -189 618 105 12 0 chrX 100669234 100669320 -61930610 + HY4 scRNA scRNA 1 87 -6 * 505 241 0 0 chrX 100669332 100669444 -61930486 - L1 LINE L1 -3115 3031 2920 628 119 0 103 chrX 100669447 100669573 -61930357 - Tigger2a DNA MER2_type -311 123 11 2894 175 32 47 chrX 100669574 100670191 -61929739 + L1MB2 LINE L1 5555 6162 -9 1366 159 36 11 chrX 100670200 100670477 -61929453 + L1ME1 LINE L1 5304 5587 -575 551 53 0 13 chrX 100670477 100670553 -61929377 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 1203 83 30 12 chrX 100670553 100670722 -61929208 - AluSg/x SINE Alu -9 303 132 274 154 0 0 chrX 100670725 100670764 -61929166 - Alu SINE Alu -263 39 1 1244 220 47 57 chrX 100670765 100671010 -61928920 + L1ME1 LINE L1 5580 5822 -344 2243 92 3 0 chrX 100671010 100671334 -61928596 + AluSp SINE Alu 1 325 0 1244 220 47 57 chrX 100671334 100671510 -61928420 + L1ME1 LINE L1 5822 5998 -168 226 223 160 0 chrX 100671564 100671658 -61928272 - MIR SINE MIR -45 217 109 353 134 0 15 chrX 100671997 100672064 -61927866 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1086 91 0 32 chrX 100672065 100672251 -61927679 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2120 110 82 72 chrX 100672253 100672670 -61927260 - MSTA LTR MaLR -7 421 1 317 123 55 0 chrX 100672670 100672923 -61927007 + CT-rich Low_complexity Low_complexity 1 180 0 665 255 93 6 chrX 100672923 100673084 -61926846 - AluJb SINE Alu 0 564 137 275 336 0 0 chrX 100673413 100673532 -61926398 - L1MC4 LINE L1 -600 7442 7324 826 164 0 8 chrX 100673666 100673794 -61926136 + FLAM_C SINE Alu 1 127 -16 195 39 0 0 chrX 100673794 100673803 -61926127 + (TAA)n Simple_repeat Simple_repeat 3 11 -17 1683 181 0 27 chrX 100673803 100674095 -61925835 + AluJo SINE Alu 1 284 -28 195 39 0 0 chrX 100674095 100674111 -61925819 + (TAA)n Simple_repeat Simple_repeat 10 28 0 927 243 44 85 chrX 100674124 100674642 -61925288 - L1MC5 LINE L1 -826 7135 6639 473 185 0 11 chrX 100674721 100674813 -61925117 + MER3 DNA MER1_type 119 209 0 919 271 31 37 chrX 100674813 100675167 -61924763 - L1MC5 LINE L1 -1901 5907 5556 4356 163 19 17 chrX 100675167 100675917 -61924013 - ERVL LTR ERVL -1134 4630 3880 717 196 68 90 chrX 100675932 100676299 -61923631 - L1MDa LINE L1 -4661 1879 1505 2078 165 31 53 chrX 100676299 100676717 -61923213 + MLT2D LTR ERVL 2 410 -4 717 196 68 90 chrX 100676717 100676742 -61923188 - L1MDa LINE L1 -5035 1505 1481 792 194 0 15 chrX 100676742 100676876 -61923054 + FLAM_A SINE Alu 1 132 -1 717 196 68 90 chrX 100676876 100676953 -61922977 - L1MDa LINE L1 -5059 1481 1259 533 171 0 76 chrX 100676977 100677082 -61922848 - Tigger7 DNA MER2_type -1 2490 2394 1583 189 8 4 chrX 100677083 100677347 -61922583 - Tigger7 DNA MER2_type -466 267 3 1268 268 48 27 chrX 100677347 100677997 -61921933 - L1MDa LINE L1 -5321 1219 1 1025 251 20 41 chrX 100678021 100678412 -61921518 - L1MC4a LINE L1 -1867 5941 5559 561 229 0 0 chrX 100678412 100678534 -61921396 - MLT1D LTR MaLR 0 505 384 2213 126 10 0 chrX 100678692 100679001 -61920929 - AluSx SINE Alu 0 312 1 447 285 90 70 chrX 100679069 100679613 -61920317 - L1MC4a LINE L1 -962 5184 4630 1778 85 17 0 chrX 100679621 100679857 -61920073 - AluY SINE Alu -6 305 66 913 26 34 0 chrX 100679857 100679974 -61919956 + AluY SINE Alu 171 291 -20 21 57 0 0 chrX 100679981 100680016 -61919914 + AT_rich Low_complexity Low_complexity 1 35 0 1197 151 9 18 chrX 100680049 100680267 -61919663 + LTR49 LTR ERV1 1 216 -379 206 236 18 0 chrX 100680463 100680518 -61919412 + (CA)n Simple_repeat Simple_repeat 1 56 0 1614 215 3 52 chrX 100680729 100681096 -61918834 - MLT1A2 LTR MaLR -15 359 11 2094 101 45 3 chrX 100681676 100681963 -61917967 - AluSx SINE Alu -12 300 2 1479 175 3 21 chrX 100682004 100682290 -61917640 + AluJo SINE Alu 1 281 -31 444 318 10 65 chrX 100682690 100682820 -61917110 + MIR SINE MIR 29 146 -116 2708 36 0 0 chrX 100682820 100683129 -61916801 + AluY SINE Alu 1 309 -2 444 318 10 65 chrX 100683129 100683199 -61916731 + MIR SINE MIR 146 218 -44 975 254 68 69 chrX 100683256 100683476 -61916454 - MLT1C LTR MaLR -2 450 242 1965 142 0 40 chrX 100683476 100683799 -61916131 - AluJo SINE Alu -2 310 1 975 254 68 69 chrX 100683799 100684000 -61915930 - MLT1C LTR MaLR -210 242 42 22 35 0 0 chrX 100684009 100684038 -61915892 + AT_rich Low_complexity Low_complexity 1 29 0 718 195 0 8 chrX 100684038 100684161 -61915769 - FLAM_C SINE Alu -7 126 5 31 0 0 0 chrX 100684830 100684861 -61915069 + AT_rich Low_complexity Low_complexity 1 31 0 1947 120 42 3 chrX 100685253 100685536 -61914394 + AluSx SINE Alu 1 294 -18 419 315 53 61 chrX 100685536 100685840 -61914090 + L1ME LINE L1 2144 2447 -3699 2330 59 0 21 chrX 100685840 100686153 -61913777 + AluY SINE Alu 1 307 0 419 315 53 61 chrX 100686153 100686225 -61913705 + L1ME LINE L1 2447 2518 -3628 2217 67 3 57 chrX 100686510 100686824 -61913106 + AluSc SINE Alu 1 297 -12 296 306 11 82 chrX 100686888 100686962 -61912968 + L1ME LINE L1 3321 3399 -2747 1423 19 0 0 chrX 100686962 100687118 -61912812 + L1PA2 LINE L1 6000 6155 0 296 306 11 82 chrX 100687118 100687311 -61912619 + L1ME LINE L1 3399 3569 -2577 426 294 29 56 chrX 100687328 100687364 -61912566 + L1ME LINE L1 3655 3690 -2456 1681 159 114 0 chrX 100687364 100687635 -61912295 + AluJo SINE Alu 1 302 0 426 294 29 56 chrX 100687635 100687902 -61912028 + L1ME LINE L1 3690 3945 -2201 43837 50 1 0 chrX 100687902 100694038 -61905892 - L1PA4 LINE L1 -1 6154 13 36 0 0 0 chrX 100694094 100694130 -61905800 + AT_rich Low_complexity Low_complexity 1 36 0 1951 148 0 7 chrX 100694130 100694421 -61905509 - AluSx SINE Alu -23 289 1 738 227 0 0 chrX 100694424 100694552 -61905378 - FLAM_A SINE Alu -5 128 1 2474 80 0 0 chrX 100694576 100694878 -61905052 - AluY SINE Alu -9 302 1 777 307 110 34 chrX 100694946 100695511 -61904419 + L1ME LINE L1 4023 4544 -1602 2531 62 3 0 chrX 100695511 100695816 -61904114 + AluY SINE Alu 1 306 -5 777 307 110 34 chrX 100695816 100696112 -61903818 + L1ME LINE L1 4544 4816 -1330 1754 166 7 29 chrX 100696112 100696420 -61903510 + AluJo SINE Alu 1 301 -11 777 307 110 34 chrX 100696420 100696560 -61903370 + L1ME LINE L1 4816 5101 -1045 243 143 0 0 chrX 100696992 100697027 -61902903 - 5S rRNA rRNA -86 35 1 274 250 0 18 chrX 100697324 100697380 -61902550 - MIR SINE MIR -135 73 19 368 263 6 56 chrX 100697520 100697680 -61902250 + L1ME LINE L1 5541 5692 -429 1049 179 28 28 chrX 100698063 100698281 -61901649 - MER6A DNA MER2_type 0 605 388 2275 160 92 2 chrX 100698281 100698674 -61901256 + MSTA LTR MaLR 1 428 0 * 2303 182 5 10 chrX 100698674 100699066 -61900864 - MER6A DNA MER2_type -213 392 3 2142 115 0 22 chrX 100699497 100699810 -61900120 + AluSx SINE Alu 1 306 -6 2154 116 0 0 chrX 100699998 100700302 -61899628 + AluSx SINE Alu 1 304 0 764 244 13 30 chrX 100700490 100700724 -61899206 - MER106A DNA MER1_type -5 231 2 298 326 88 11 chrX 100700751 100700932 -61898998 + MIR SINE MIR 56 250 -12 241 296 96 15 chrX 100701466 100701601 -61898329 + MIR SINE MIR 60 205 -57 243 220 82 132 chrX 100701757 100701916 -61898014 + MIR SINE MIR 39 189 -73 186 167 0 48 chrX 100702051 100702093 -61897837 + MER5B DNA MER1_type 15 54 -124 2341 102 0 0 chrX 100702483 100702787 -61897143 - AluSx SINE Alu -8 304 1 2429 83 0 3 chrX 100703133 100703435 -61896495 - AluY SINE Alu -10 301 1 861 145 0 0 chrX 100703470 100703587 -61896343 - FLAM_C SINE Alu -16 117 1 229 211 58 0 chrX 100703994 100704046 -61895884 - MIR3 SINE MIR -140 68 14 5760 145 7 40 chrX 100704885 100705424 -61894506 + L1PB3 LINE L1 4681 5236 -918 2884 70 0 0 chrX 100705424 100705768 -61894162 + LTR14A LTR ERVK 1 344 0 5760 145 7 40 chrX 100705768 100706757 -61893173 + L1PB3 LINE L1 5236 6152 -2 2288 93 0 0 chrX 100707006 100707307 -61892623 - AluY SINE Alu -10 301 1 180 135 0 0 chrX 100707457 100707494 -61892436 + (CA)n Simple_repeat Simple_repeat 2 38 0 762 206 15 0 chrX 100707637 100707768 -61892162 - FLAM_A SINE Alu 0 133 1 5415 115 73 65 chrX 100707818 100708942 -61890988 + pTR5 LTR ERV1 741 2025 -413 363 227 36 54 chrX 100708942 100709053 -61890877 + LTR30 LTR ERV1 375 642 -80 1611 70 0 5 chrX 100709053 100709266 -61890664 + pTR5 LTR ERV1 181 392 -2046 5038 91 118 8 chrX 100709645 100710348 -61889582 + LTR17 LTR ERV1 1 780 0 312 250 0 28 chrX 100711827 100711896 -61888034 - MER90 LTR ERV1 0 575 509 3077 128 52 77 chrX 100711896 100712368 -61887562 - MER4D LTR ERV1 0 872 455 2158 79 0 4 chrX 100712368 100712634 -61887296 + AluSc SINE Alu 34 298 -11 3077 128 52 77 chrX 100712634 100712822 -61887108 - MER4D LTR ERV1 -417 455 264 2378 143 3 26 chrX 100712828 100713219 -61886711 - LTR8 LTR ERV1 0 691 310 1681 120 10 35 chrX 100713237 100713523 -61886407 - LTR8 LTR ERV1 -127 600 310 21 71 0 0 chrX 100713607 100713649 -61886281 + AT_rich Low_complexity Low_complexity 1 42 0 2023 211 94 75 chrX 100714064 100714626 -61885304 - MER50 LTR ERV1 0 734 154 2483 74 0 0 chrX 100714626 100714922 -61885008 + AluY SINE Alu 1 296 -15 2023 211 94 75 chrX 100714922 100715070 -61884860 - MER50 LTR ERV1 -580 154 10 7321 67 134 48 chrX 100715101 100716267 -61883663 + MER11A LTR ERVK 1 1266 0 195 327 0 18 chrX 100716300 100716355 -61883575 - L2 LINE L2 -251 3062 3009 2015 182 27 100 chrX 100716365 100716471 -61883459 + LTR54 LTR ERV1 1 113 -397 2066 107 7 0 chrX 100716471 100716761 -61883169 - AluSx SINE Alu -20 292 1 2015 182 27 100 chrX 100716761 100717204 -61882726 + LTR54 LTR ERV1 113 510 0 573 254 14 7 chrX 100717228 100717366 -61882564 + MER57-int LTR ERV1 2005 2143 -4188 7306 127 134 92 chrX 100717531 100719181 -61880749 + pTR5 LTR ERV1 375 2438 0 253 253 11 115 chrX 100719203 100719377 -61880553 + MER57-int LTR ERV1 327 482 -7055 2389 83 0 3 chrX 100719452 100719764 -61880166 - AluY SINE Alu 0 311 1 1267 174 82 35 chrX 100719844 100720126 -61879804 + AluJo SINE Alu 1 295 -17 10766 38 5 67 chrX 100720127 100721597 -61878333 + SVA Other Other 8 1386 0 280 226 0 0 chrX 100721602 100721655 -61878275 + MER57-int LTR ERV1 558 610 -6927 1998 138 0 7 chrX 100721988 100722293 -61877637 + AluSq SINE Alu 1 303 -10 2371 64 0 0 chrX 100722413 100722711 -61877219 + AluY SINE Alu 1 298 -13 740 176 84 21 chrX 100722754 100722896 -61877034 - FRAM SINE Alu -25 151 1 1950 128 3 0 chrX 100722925 100723214 -61876716 - AluSx SINE Alu -22 290 1 4714 40 45 0 chrX 100723332 100723887 -61876043 - LTR19B LTR ERV1 0 580 1 436 237 36 29 chrX 100724250 100724352 -61875578 + MER57-int LTR ERV1 851 956 -4167 1474 189 27 0 chrX 100724352 100724648 -61875282 + AluJo SINE Alu 1 304 -8 436 237 36 29 chrX 100724648 100724684 -61875246 + MER57-int LTR ERV1 956 990 -4133 587 265 112 15 chrX 100724686 100724882 -61875048 + MER34C LTR ERV1 160 374 -211 1023 228 147 61 chrX 100724947 100725438 -61874492 + MER57-int LTR ERV1 1228 1760 -3363 558 233 43 43 chrX 100725294 100725457 -61874473 + LTR57-int LTR ERVL 1274 1436 -3907 * 3070 161 36 125 chrX 100725893 100726699 -61873231 + MER50 LTR ERV1 1 734 0 3561 150 15 14 chrX 100727150 100727668 -61872262 - LTR49 LTR ERV1 0 595 74 2628 85 65 0 chrX 100727668 100728022 -61871908 - MER51B LTR ERV1 0 377 1 3561 150 15 14 chrX 100728022 100728097 -61871833 - LTR49 LTR ERV1 -521 74 1 31 58 0 0 chrX 100728179 100728231 -61871699 + AT_rich Low_complexity Low_complexity 1 52 0 6300 51 14 14 chrX 100728267 100729047 -61870883 - LTR17 LTR ERV1 0 780 1 2919 121 21 33 chrX 100729159 100729762 -61870168 - MER4B LTR ERV1 0 766 1 703 195 70 32 chrX 100729773 100730232 -61869698 + LTR49-int LTR ERV1 1815 2558 -2378 1362 169 117 72 chrX 100730259 100730661 -61869269 + LTR49-int LTR ERV1 4075 4494 -1837 964 88 0 0 chrX 100730711 100730836 -61869094 - AluSq/x SINE Alu -187 125 1 688 230 0 8 chrX 100730894 100731020 -61868910 + MSTC LTR MaLR 1 125 -303 1630 163 2 49 chrX 100731020 100731532 -61868398 - pTR5 LTR ERV1 -1170 1268 732 532 254 124 34 chrX 100732774 100733097 -61866833 - L1MEc LINE L1 -3385 2830 2479 2440 68 0 0 chrX 100733434 100733742 -61866188 - AluY SINE Alu -3 308 1 1153 169 172 55 chrX 100733821 100734129 -61865801 + MER2 DNA MER2_type 1 344 0 229 176 0 39 chrX 100734744 100734795 -61865135 - L1PA3 LINE L1 -137 6018 5970 288 281 80 13 chrX 100738560 100738859 -61861071 - L1MEc LINE L1 -3711 2504 2186 338 343 51 17 chrX 100738867 100739045 -61860885 - L1MEc LINE L1 -4190 2206 2023 1813 55 42 4 chrX 100739063 100739299 -61860631 - AluY SINE Alu -58 253 9 22 0 0 0 chrX 100739307 100739329 -61860601 + AT_rich Low_complexity Low_complexity 1 22 0 649 128 0 0 chrX 100739335 100739429 -61860501 + AluS SINE Alu 2 95 -217 2287 84 7 0 chrX 100739515 100739824 -61860106 - AluY SINE Alu 0 311 1 298 343 45 0 chrX 100739968 100740102 -61859828 - MIR SINE MIR -66 196 57 1067 193 19 0 chrX 100740268 100740475 -61859455 + AluJb SINE Alu 84 294 -18 522 225 195 25 chrX 100746430 100746630 -61853300 + MIR SINE MIR 17 250 -12 392 276 73 83 chrX 100746991 100747019 -61852911 + MIR SINE MIR 1 28 -234 1494 186 39 4 chrX 100747019 100747299 -61852631 + AluJo SINE Alu 1 290 -22 392 276 73 83 chrX 100747299 100747462 -61852468 + MIR SINE MIR 28 190 -72 2449 55 0 6 chrX 100747894 100748205 -61851725 + AluY SINE Alu 1 309 -2 1834 156 117 39 chrX 100748396 100748963 -61850967 - MER4A LTR ERV1 0 465 1 239 329 35 0 chrX 100749623 100749708 -61850222 - MIR SINE MIR -77 185 98 1986 132 10 10 chrX 100750090 100750401 -61849529 + AluSx SINE Alu 1 311 -1 1235 232 124 24 chrX 100750589 100751007 -61848923 - MLT1C LTR MaLR 0 467 8 1807 225 49 69 chrX 100751018 100751385 -61848545 - MLT1C-int LTR MaLR -4 1367 1011 2109 119 0 3 chrX 100751385 100751687 -61848243 + AluSx SINE Alu 2 302 -10 1807 225 49 69 chrX 100751687 100751826 -61848104 - MLT1C-int LTR MaLR -360 1011 871 1071 275 11 14 chrX 100751902 100752178 -61847752 - MLT1C-int LTR MaLR -487 884 610 6625 216 44 6 chrX 100752182 100753192 -61846738 - L1 LINE L1 -756 5390 4293 1623 186 3 17 chrX 100753192 100753488 -61846442 - AluJo SINE Alu -20 292 1 6625 216 44 6 chrX 100753488 100754117 -61845813 - L1 LINE L1 -1853 4293 3689 10875 120 30 49 chrX 100754140 100754207 -61845723 - Tigger1 DNA MER2_type -105 2313 2246 2439 62 7 0 chrX 100754207 100754514 -61845416 + AluY SINE Alu 1 309 -2 10875 120 30 49 chrX 100754514 100754721 -61845209 - Tigger1 DNA MER2_type -172 2246 2036 631 191 0 29 chrX 100754721 100754857 -61845073 + FLAM_A SINE Alu 1 132 -1 2167 94 3 3 chrX 100754866 100755164 -61844766 - AluY SINE Alu -13 298 1 10875 120 30 49 chrX 100755164 100755503 -61844427 - Tigger1 DNA MER2_type -390 2028 1684 2087 105 0 0 chrX 100755503 100755789 -61844141 - AluSg SINE Alu -24 286 1 10875 120 30 49 chrX 100755789 100756927 -61843003 - Tigger1 DNA MER2_type -734 1684 586 1873 115 0 0 chrX 100756927 100757188 -61842742 - AluSg SINE Alu -49 261 1 10875 120 30 49 chrX 100757188 100757290 -61842640 - Tigger1 DNA MER2_type -1832 586 484 1987 136 0 7 chrX 100757290 100757599 -61842331 - AluSx SINE Alu -5 307 1 2242 187 16 47 chrX 100757599 100757994 -61841936 + L1ME4a LINE L1 4802 5148 -1030 2158 112 0 3 chrX 100757994 100758297 -61841633 - AluSx SINE Alu -10 302 1 2242 187 16 47 chrX 100758297 100758744 -61841186 + L1ME4a LINE L1 5148 5607 -571 1282 219 16 9 chrX 100758752 100759072 -61840858 + L1MB8 LINE L1 5851 6172 -6 1766 146 3 17 chrX 100759091 100759386 -61840544 + AluSx SINE Alu 1 291 -21 423 0 0 0 chrX 100759395 100759442 -61840488 + (CA)n Simple_repeat Simple_repeat 2 48 0 262 143 0 20 chrX 100759589 100759638 -61840292 + (GA)n Simple_repeat Simple_repeat 1 48 0 480 33 11 54 chrX 100759639 100759731 -61840199 + (GAA)n Simple_repeat Simple_repeat 3 90 0 22 0 0 0 chrX 100761354 100761376 -61838554 + GC_rich Low_complexity Low_complexity 1 22 0 472 234 70 78 chrX 100762678 100762935 -61836995 + L1ME4a LINE L1 5793 6047 -74 2719 104 25 55 chrX 100763011 100763482 -61836448 + L1PA14 LINE L1 5705 6161 0 200 365 27 0 chrX 100763804 100763878 -61836052 + MIR SINE MIR 31 106 -102 413 265 97 76 chrX 100763927 100764112 -61835818 + MER5A DNA MER1_type 1 189 0 271 51 0 0 chrX 100764139 100764178 -61835752 - AluY SINE Alu -4 298 260 1743 55 0 5 chrX 100764180 100764398 -61835532 - AluY SINE Alu -94 217 1 2170 222 59 55 chrX 100764738 100765283 -61834647 + MLT1E LTR MaLR 47 593 0 276 203 38 13 chrX 100765284 100765363 -61834567 - L1MC5 LINE L1 -242 7719 7639 396 0 0 0 chrX 100765385 100765429 -61834501 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 405 0 0 0 chrX 100765428 100765473 -61834457 + (GA)n Simple_repeat Simple_repeat 2 46 0 2119 103 7 0 chrX 100765474 100765746 -61834184 - AluSq SINE Alu -35 278 5 2157 91 42 0 chrX 100766164 100766450 -61833480 + AluSg SINE Alu 7 304 -6 1049 223 59 39 chrX 100766715 100767052 -61832878 - MER2 DNA MER2_type 0 344 1 731 244 77 0 chrX 100767857 100768025 -61831905 + MER63A DNA MER1_type 1 181 -29 206 121 0 0 chrX 100768238 100768271 -61831659 + (TG)n Simple_repeat Simple_repeat 1 33 0 460 294 7 43 chrX 100768340 100768548 -61831382 + MIR SINE MIR 2 260 -2 673 244 34 79 chrX 100768705 100768996 -61830934 + MER102a DNA MER1_type 44 321 -9 1253 184 66 7 chrX 100769105 100769409 -61830521 + MER33 DNA MER1_type 1 322 -2 372 251 86 82 chrX 100769500 100769683 -61830247 - L1ME4a LINE L1 -68 6053 5867 2500 78 0 0 chrX 100769683 100769990 -61829940 + AluY SINE Alu 1 307 -4 372 251 86 82 chrX 100769990 100770049 -61829881 - L1ME4a LINE L1 -254 5867 5810 1569 188 59 39 chrX 100770424 100770780 -61829150 - MLT1A2 LTR MaLR -11 363 1 283 294 266 5 chrX 100770860 100771044 -61828886 - MIR SINE MIR -6 256 25 394 212 110 77 chrX 100771069 100771224 -61828706 + L1P1 LINE L1 5498 5660 -495 531 246 34 64 chrX 100771500 100771736 -61828194 - MLT1L LTR MaLR -17 598 370 180 0 0 0 chrX 100772219 100772239 -61827691 + (GA)n Simple_repeat Simple_repeat 2 21 0 608 318 84 19 chrX 100773027 100773117 -61826813 + L2 LINE L2 2606 2689 -583 2075 119 3 10 chrX 100773117 100773412 -61826518 - AluSc SINE Alu -16 293 1 608 318 84 19 chrX 100773412 100773726 -61826204 + L2 LINE L2 2689 3029 -243 2327 99 120 67 chrX 100773733 100774198 -61825732 + LTR21A LTR ERV1 1 490 -15 555 100 0 0 chrX 100774198 100774278 -61825652 + HERVFH21 LTR ERV1 5 84 -6445 2132 178 22 20 chrX 100774278 100774723 -61825207 + L1MCa LINE L1 77 522 -5904 2141 108 4 0 chrX 100774728 100775029 -61824901 + AluSg SINE Alu 1 302 0 14613 158 20 22 chrX 100775029 100775794 -61824136 + L1MA3 LINE L1 2666 3431 -4293 2501 60 0 0 chrX 100775794 100776092 -61823838 - AluY SINE Alu -13 298 1 14613 158 20 22 chrX 100776092 100777007 -61822923 + L1MA3 LINE L1 3431 4347 -3377 2374 91 3 3 chrX 100777007 100777316 -61822614 + AluY SINE Alu 1 309 -2 14613 158 20 22 chrX 100777316 100778491 -61821439 + L1MA3 LINE L1 4347 5523 -2201 2153 113 153 5 chrX 100778491 100778864 -61821066 - MSTA LTR MaLR 0 428 1 14613 158 20 22 chrX 100778864 100779554 -61820376 + L1MA3 LINE L1 5523 6213 -1511 2219 97 0 3 chrX 100779554 100779842 -61820088 + AluSx SINE Alu 9 295 -17 14613 158 20 22 chrX 100779842 100781362 -61818568 + L1MA3 LINE L1 6213 7724 0 2470 228 67 12 chrX 100781373 100782729 -61817201 + L1MCa LINE L1 1742 3170 -3256 * 4790 178 10 15 chrX 100782719 100784349 -61815581 + L1PB4 LINE L1 4533 6153 -3 5644 209 36 107 chrX 100784356 100784780 -61815150 + L1MA4 LINE L1 2113 2565 -3735 2144 73 0 0 chrX 100784780 100785039 -61814891 + AluSc SINE Alu 39 297 -12 5644 209 36 107 chrX 100785039 100786272 -61813658 + L1MA4 LINE L1 2565 3884 -2416 3772 66 6 4 chrX 100786272 100786771 -61813159 + L1PA8 LINE L1 5666 6166 -6 5644 209 36 107 chrX 100786771 100787041 -61812889 + L1MA4 LINE L1 3884 4172 -2128 2165 114 3 0 chrX 100787041 100787331 -61812599 + AluSc SINE Alu 1 291 -18 5644 209 36 107 chrX 100787331 100787788 -61812142 + L1MA4 LINE L1 4172 4660 -1640 240 35 0 0 chrX 100787788 100787817 -61812113 + (TG)n Simple_repeat Simple_repeat 2 30 0 5644 209 36 107 chrX 100787817 100788139 -61811791 + L1MA4 LINE L1 4660 5003 -1297 1800 148 14 0 chrX 100788139 100788422 -61811508 - AluSx SINE Alu -25 287 1 5644 209 36 107 chrX 100788422 100788819 -61811111 + L1MA4 LINE L1 5003 5426 -874 2497 68 3 0 chrX 100788819 100789127 -61810803 + AluY SINE Alu 1 309 -2 5644 209 36 107 chrX 100789127 100790249 -61809681 + L1MA4 LINE L1 5426 5755 -545 252 77 0 0 chrX 100790249 100790288 -61809642 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 5644 209 36 107 chrX 100790288 100790793 -61809137 + L1MA4 LINE L1 5755 6294 -6 1592 142 59 9 chrX 100790793 100791124 -61808806 + L1MA8 LINE L1 5935 6288 -3 24 0 0 0 chrX 100791124 100791148 -61808782 + AT_rich Low_complexity Low_complexity 1 24 0 386 315 74 15 chrX 100791348 100791551 -61808379 - L1M4 LINE L1 -3005 3141 2927 6434 89 0 6 chrX 100791556 100792823 -61807107 - L1PA10 LINE L1 -5 6163 4890 2244 179 39 7 chrX 100793980 100794393 -61805537 - MSTB LTR MaLR 0 426 1 582 239 141 53 chrX 100794923 100795134 -61804796 - MIR SINE MIR -10 252 18 2527 68 3 0 chrX 100795134 100795444 -61804486 - AluY SINE Alu 0 311 1 582 239 141 53 chrX 100795444 100795459 -61804471 - MIR SINE MIR -244 18 6 8795 85 17 2 chrX 100795976 100797985 -61801945 - L1PA6 LINE L1 -3 6151 4124 3151 56 5 0 chrX 100798427 100798822 -61801108 + L1PA7 LINE L1 5708 6104 -50 44273 38 1 1 chrX 100798829 100804986 -61794944 + L1PA3 LINE L1 2 6155 0 9679 157 10 24 chrX 100804988 100806140 -61793790 + L1P LINE L1 1969 3135 -3011 225 0 0 0 chrX 100806140 100806165 -61793765 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9679 157 10 24 chrX 100806165 100806243 -61793687 + L1P LINE L1 3135 3213 -2933 234 0 0 0 chrX 100806243 100806269 -61793661 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9679 157 10 24 chrX 100806269 100806858 -61793072 + L1P LINE L1 3213 3764 -2382 2065 70 54 7 chrX 100806858 100807150 -61792780 + L1PA11 LINE L1 5861 6172 -2 258 56 0 0 chrX 100808558 100808594 -61791336 + (CA)n Simple_repeat Simple_repeat 2 37 0 184 261 113 52 chrX 100809446 100809495 -61790435 + MIR SINE MIR 100 145 -117 2351 119 57 38 chrX 100809495 100809915 -61790015 - MSTA LTR MaLR 0 428 1 184 261 113 52 chrX 100809915 100809980 -61789950 + MIR SINE MIR 145 221 -41 239 326 130 0 chrX 100810286 100810424 -61789506 + MIR SINE MIR 58 213 -49 27 0 0 0 chrX 100811383 100811410 -61788520 + AT_rich Low_complexity Low_complexity 1 27 0 227 303 13 13 chrX 100811503 100811579 -61788351 + MIR SINE MIR 31 106 -156 332 236 91 36 chrX 100811579 100811689 -61788241 - MIR SINE MIR -44 218 103 1756 192 167 16 chrX 100811834 100812282 -61787648 + MLT1E2 LTR MaLR 111 626 0 1648 271 48 12 chrX 100812282 100812798 -61787132 - L1MEc LINE L1 -5574 822 288 313 343 73 11 chrX 100812800 100812978 -61786952 - L1MEc LINE L1 -6173 223 35 440 228 138 24 chrX 100812978 100813101 -61786829 - MER5B DNA MER1_type -36 142 6 699 170 95 0 chrX 100813136 100813283 -61786647 + LTR57-int LTR ERVL 1179 1339 -4004 321 93 0 0 chrX 100813283 100813326 -61786604 + MADE1 DNA Mariner 2 44 -36 2367 102 32 30 chrX 100813327 100813727 -61786203 + MER4-int LTR ERV1 1299 1699 -6421 3255 156 86 76 chrX 100813731 100814227 -61785703 + MER4-int LTR ERV1 2950 3440 -3158 2093 55 11 11 chrX 100814227 100814499 -61785431 + L1PA11 LINE L1 5903 6174 0 3255 156 86 76 chrX 100814499 100815064 -61784866 + MER4-int LTR ERV1 3440 4021 -2577 1592 102 23 0 chrX 100815240 100815455 -61784475 - AluSg/x SINE Alu -8 304 85 1122 251 65 41 chrX 100816179 100816205 -61783725 - MER4D LTR ERV1 0 903 879 234 0 0 0 chrX 100816205 100816231 -61783699 + (TA)n Simple_repeat Simple_repeat 2 27 0 2578 68 0 6 chrX 100816232 100816543 -61783387 - AluSc SINE Alu 0 309 1 1122 251 65 41 chrX 100816543 100816881 -61783049 - MER4D LTR ERV1 -23 880 528 1681 142 29 11 chrX 100816892 100817173 -61782757 - MER49 LTR ERV1 -637 286 1 970 289 138 26 chrX 100818499 100819035 -61780895 + L3 LINE CR1 329 924 -653 199 329 0 13 chrX 100819314 100819390 -61780540 - MIR3 SINE MIR -27 181 107 2428 98 0 0 chrX 100819771 100820076 -61779854 + AluSx SINE Alu 1 305 -7 449 17 0 17 chrX 100820474 100820533 -61779397 + (CA)n Simple_repeat Simple_repeat 2 59 0 402 310 62 25 chrX 100821050 100821292 -61778638 - MIR SINE MIR -11 251 1 447 294 51 15 chrX 100821547 100821744 -61778186 - HAL1 LINE L1 -31 2476 2273 1561 181 139 62 chrX 100824131 100824563 -61775367 + MLT1D LTR MaLR 12 476 -29 191 292 62 35 chrX 100824612 100824725 -61775205 + L2 LINE L2 2866 2981 -291 2248 111 0 0 chrX 100825019 100825316 -61774614 - AluSg SINE Alu -13 297 1 649 285 103 5 chrX 100825560 100825774 -61774156 + MIR SINE MIR 20 254 -8 300 339 54 0 chrX 100826175 100826305 -61773625 - L2 LINE L2 -582 2732 2596 1006 309 110 32 chrX 100828054 100828792 -61771138 - ERVL LTR ERVL -722 5042 4248 278 308 19 0 chrX 100828976 100829083 -61770847 - ERVL LTR ERVL -1679 3975 3867 313 294 6 136 chrX 100829150 100829327 -61770603 + LTR67 LTR ERVL 21 174 -383 387 0 0 0 chrX 100830104 100830147 -61769783 + (CA)n Simple_repeat Simple_repeat 2 44 0 1799 159 64 15 chrX 100832617 100832944 -61766986 - MER61A LTR ERV1 0 343 1 700 316 85 25 chrX 100833751 100834496 -61765434 + LOR1a-int LTR ERV1 3499 4601 -2482 3240 216 54 61 chrX 100834934 100835963 -61763967 + LOR1a-int LTR ERV1 6063 7847 -273 953 163 56 0 chrX 100835981 100836141 -61763789 + LOR1a-int LTR ERV1 7950 8118 -2 2078 207 82 13 chrX 100836142 100836606 -61763324 + LOR1a LTR ERV1 2 497 0 2374 74 10 10 chrX 100838452 100838749 -61761181 + AluSc SINE Alu 1 297 -12 229 250 0 16 chrX 100840108 100840172 -61759758 + MER65A LTR ERV1 257 319 -126 1726 136 6 93 chrX 100840174 100840497 -61759433 + AluJb SINE Alu 7 301 -11 265 234 58 78 chrX 100840716 100840870 -61759060 - LTR26E LTR ERV1 -12 610 460 233 313 93 37 chrX 100842789 100843003 -61756927 + L2 LINE L2 2715 2940 -374 279 238 16 0 chrX 100843073 100843136 -61756794 - MER5B DNA MER1_type -56 122 59 272 309 100 9 chrX 100843498 100843608 -61756322 + L2 LINE L2 3143 3262 -10 252 351 54 7 chrX 100843618 100843766 -61756164 - MIR3 SINE MIR -48 160 6 849 214 16 6 chrX 100844049 100844231 -61755699 + MER5A DNA MER1_type 1 184 -5 5035 112 3 11 chrX 100847301 100848015 -61751915 - LTR17 LTR ERV1 -72 708 1 2054 189 105 2 chrX 100848662 100849081 -61750849 - LTR24 LTR ERV1 0 467 6 1463 135 79 143 chrX 100849152 100849619 -61750311 - LTR23 LTR ERV1 0 437 1 5183 204 71 12 chrX 100849624 100851686 -61748244 - L1PA16 LINE L1 -3 6879 4647 2814 99 0 0 chrX 100851762 100852124 -61747806 - THE1B LTR MaLR -2 362 1 10474 98 24 42 chrX 100852124 100853732 -61746198 - THE1B-int LTR MaLR 0 1580 2 2015 120 42 63 chrX 100853733 100854116 -61745814 - THE1C LTR MaLR 0 375 1 4352 205 35 14 chrX 100854117 100855168 -61744762 - L1 LINE L1 -2910 3952 2880 284 234 13 13 chrX 100855246 100855323 -61744607 + L1PBa LINE L1 2796 2872 -3991 * 5121 164 107 5 chrX 100855281 100856328 -61743602 - L1PA16 LINE L1 -3975 2888 1735 242 252 27 0 chrX 100856982 100857071 -61742859 + L2 LINE L2 2891 2980 -292 503 161 49 0 chrX 100857233 100857314 -61742616 - MER45A DNA AcHobo 0 178 94 348 214 11 0 chrX 100857314 100857403 -61742527 - L1MA4 LINE L1 -184 6116 6027 * 540 209 92 0 chrX 100857401 100857554 -61742376 + L1MA4 LINE L1 6090 6256 -44 1131 143 37 230 chrX 100857578 100857771 -61742159 + L1MC3 LINE L1 7390 7565 -220 753 161 0 0 chrX 100857771 100857883 -61742047 + AluJb SINE Alu 174 285 -27 1131 143 37 230 chrX 100857883 100858069 -61741861 + L1MC3 LINE L1 7565 7785 0 2331 88 10 0 chrX 100858082 100858377 -61741553 + AluSp SINE Alu 1 298 -15 865 162 202 7 chrX 100858578 100858774 -61741156 + L1MB7 LINE L1 5872 6113 -71 2612 47 0 0 chrX 100859507 100859804 -61740126 - AluY SINE Alu -14 297 1 1482 158 0 38 chrX 100861619 100861884 -61738046 + AluJo SINE Alu 2 256 -56 503 253 0 37 chrX 100861963 100862125 -61737805 - L1MA9 LINE L1 -38 6274 6119 220 337 118 6 chrX 100862189 100862367 -61737563 + L2 LINE L2 1728 1925 -1389 491 339 10 10 chrX 100862477 100862669 -61737261 + MIR SINE MIR 27 218 -44 235 253 55 11 chrX 100862779 100862870 -61737060 + L1ME4a LINE L1 5872 5966 -155 195 281 0 0 chrX 100863904 100863961 -61735969 - MIR SINE MIR -150 112 56 980 186 34 42 chrX 100863987 100864224 -61735706 + MER106A DNA MER1_type 1 235 -1 14432 212 44 31 chrX 100864509 100866945 -61732985 + L1PA15 LINE L1 260 2664 -4939 2195 129 0 0 chrX 100866945 100867254 -61732676 + AluSx SINE Alu 1 309 -3 14432 212 44 31 chrX 100867254 100868693 -61731237 + L1PA15 LINE L1 2664 4083 -3520 1999 127 18 0 chrX 100868693 100869047 -61730883 + AluSx SINE Alu 1 359 0 14432 212 44 31 chrX 100869047 100869209 -61730721 + L1PA15 LINE L1 4083 4241 -3362 1697 92 18 9 chrX 100869209 100869437 -61730493 - AluSg/x SINE Alu -13 297 68 14432 212 44 31 chrX 100869437 100871585 -61728345 + L1PA15 LINE L1 4241 6528 -1075 2580 68 0 0 chrX 100871585 100871896 -61728034 + AluY SINE Alu 1 311 0 14432 212 44 31 chrX 100871896 100872979 -61726951 + L1PA15 LINE L1 6528 7596 -7 22 0 0 0 chrX 100873088 100873110 -61726820 + AT_rich Low_complexity Low_complexity 1 22 0 1810 92 8 4 chrX 100874598 100874836 -61725094 + AluSq SINE Alu 56 294 -19 264 307 148 6 chrX 100875598 100875769 -61724161 + MIR SINE MIR 1 192 -40 200 172 0 31 chrX 100876626 100876690 -61723240 + CT-rich Low_complexity Low_complexity 2 63 0 5333 139 15 18 chrX 100877406 100878332 -61721598 + MER49 LTR ERV1 1 923 0 206 256 116 35 chrX 100878898 100878984 -61720946 - MIR SINE MIR -76 132 40 237 320 112 22 chrX 100879319 100879497 -61720433 - MIR SINE MIR -11 251 58 427 89 13 13 chrX 100879509 100879588 -61720342 + (TA)n Simple_repeat Simple_repeat 2 80 0 2394 87 0 0 chrX 100879723 100880023 -61719907 - AluSg SINE Alu -10 300 1 528 229 70 5 chrX 100880062 100880263 -61719667 + L1MDa LINE L1 2017 2230 -4310 736 291 25 0 chrX 100881739 100882017 -61717913 + L1MC5 LINE L1 5617 5901 -1907 777 219 10 44 chrX 100882028 100882233 -61717697 - MER3 DNA MER1_type -4 205 8 1035 193 0 38 chrX 100882340 100882552 -61717378 + AluJo SINE Alu 87 290 -22 545 243 71 7 chrX 100882632 100882917 -61717013 + L1MC5 LINE L1 6638 7011 -1031 21 36 0 0 chrX 100883710 100883738 -61716192 + AT_rich Low_complexity Low_complexity 1 28 0 592 319 11 11 chrX 100883816 100884004 -61715926 + MIR SINE MIR 27 214 -48 7485 155 8 0 chrX 100984297 100986636 -61613294 + L1PA14 LINE L1 3873 6152 -9 235 235 0 0 chrX 100988085 100988136 -61611794 + (CATA)n Simple_repeat Simple_repeat 4 54 0 14536 31 5 0 chrX 100988738 100991171 -61608759 - L1PA3 LINE L1 -177 5978 3536 340 284 28 64 chrX 100991298 100991548 -61608382 - L1ME2 LINE L1 -13 6151 5911 6097 62 1 0 chrX 100991647 100992442 -61607488 + L1PA6 LINE L1 5366 6161 0 3769 129 25 42 chrX 100992445 100993127 -61606803 + L1PA15 LINE L1 5496 6165 0 237 105 53 0 chrX 100993143 100993181 -61606749 - Alu SINE Alu -177 125 86 233 333 0 23 chrX 100993247 100993334 -61606596 + CT-rich Low_complexity Low_complexity 3 87 0 9536 173 25 13 chrX 100993738 100996452 -61603478 - L1PA15 LINE L1 -141 6024 3276 323 36 25 0 chrX 100996556 100996613 -61603317 - AluY SINE Alu -256 46 1 1200 194 0 13 chrX 100996613 100997000 -61602930 - L1M4 LINE L1 -689 5485 5107 * 3823 150 1 8 chrX 100996995 100997700 -61602230 - L1M4 LINE L1 -1437 4709 4010 1629 158 38 8 chrX 100997699 100998066 -61601864 - L1 LINE L1 -1534 4612 4235 * 3258 159 23 3 chrX 100998072 100998690 -61601240 - L1MC3 LINE L1 0 7785 7156 17197 47 2 4 chrX 100998791 101001102 -61598828 - L1P LINE L1 -1368 4778 2472 3871 76 26 0 chrX 101001102 101001640 -61598290 - HERVL LTR ERVL -4740 914 363 3006 55 3 0 chrX 101002128 101002507 -61597423 - L1PA7 LINE L1 -6 6148 5769 12724 34 8 0 chrX 101002524 101004837 -61595093 - L1PA4 LINE L1 -1 6154 3822 7857 147 30 15 chrX 101007902 101008911 -61591019 + L1M1 LINE L1 2271 3263 -4302 2280 84 47 0 chrX 101008911 101009210 -61590720 - AluSp SINE Alu 0 313 1 7857 147 30 15 chrX 101009210 101010244 -61589686 + L1M1 LINE L1 3263 4352 -3213 2052 44 0 0 chrX 101010345 101010615 -61589315 - L1P LINE L1 -904 5242 4973 189 269 26 64 chrX 101011530 101011608 -61588322 - MIR SINE MIR -108 100 26 672 268 15 5 chrX 101011906 101012104 -61587826 - L1ME LINE L1 -499 5667 5468 3748 202 20 46 chrX 101012117 101013008 -61586922 - L1MA7 LINE L1 -5 6286 5427 2013 125 7 0 chrX 101013008 101013297 -61586633 + AluSg SINE Alu 1 291 -19 3748 202 20 46 chrX 101013297 101013501 -61586429 - L1MA7 LINE L1 -864 5427 5219 306 297 14 14 chrX 101013740 101013888 -61586042 - MER41B LTR ERV1 -205 430 283 * 323 252 32 32 chrX 101013861 101013984 -61585946 - MER41E LTR ERV1 -336 176 54 579 182 27 14 chrX 101014088 101014236 -61585694 - L1MA7 LINE L1 -938 5208 5059 229 327 57 15 chrX 101014284 101014547 -61585383 + L1MEd LINE L1 965 1238 -4881 300 329 64 16 chrX 101014891 101015140 -61584790 + LTR16A LTR ERVL 172 432 -18 8236 160 2 11 chrX 101015348 101017628 -61582302 + L1PA12 LINE L1 3673 5889 -279 2265 138 11 16 chrX 101017628 101018005 -61581925 + THE1C LTR MaLR 1 375 0 8236 160 2 11 chrX 101018005 101018273 -61581657 + L1PA12 LINE L1 5889 6158 -10 1983 144 17 0 chrX 101018328 101018626 -61581304 + AluSx SINE Alu 1 303 -9 28 0 0 0 chrX 101019504 101019532 -61580398 + AT_rich Low_complexity Low_complexity 1 28 0 300 324 9 0 chrX 101021015 101021120 -61578810 + Charlie1b DNA MER1_type 104 209 -314 256 267 19 9 chrX 101022003 101022108 -61577822 + L1MCc LINE L1 25 130 -6293 378 256 0 0 chrX 101023579 101023665 -61576265 - MLT1H1 LTR MaLR 0 467 382 710 253 17 0 chrX 101023667 101023841 -61576089 - MLT1B LTR MaLR -210 180 4 1191 292 46 10 chrX 101023870 101024260 -61575670 - MLT1B-int LTR MaLR -18 1353 950 2857 249 35 28 chrX 101024573 101025007 -61574923 - MLT1B-int LTR MaLR -484 887 457 3197 204 27 2 chrX 101025007 101025644 -61574286 - MER39B LTR ERV1 0 653 1 2857 249 35 28 chrX 101025644 101026090 -61573840 - MLT1B-int LTR MaLR -914 457 1 751 189 8 121 chrX 101026095 101026344 -61573586 - MLT1B LTR MaLR -5 385 165 449 270 52 16 chrX 101026994 101027214 -61572716 + MIR3 SINE MIR 13 258 -4 184 341 32 24 chrX 101027545 101027668 -61572262 + L2 LINE L2 2965 3088 -184 386 238 43 91 chrX 101028751 101028961 -61570969 - MLT1H1 LTR MaLR -154 401 202 203 88 29 0 chrX 101030053 101030087 -61569843 + (TA)n Simple_repeat Simple_repeat 1 35 0 1320 217 27 14 chrX 101030102 101030270 -61569660 - AluJb SINE Alu -13 299 124 441 0 0 0 chrX 101030270 101030319 -61569611 + (TG)n Simple_repeat Simple_repeat 2 50 0 1320 217 27 14 chrX 101030319 101030445 -61569485 - AluJb SINE Alu -188 124 1 27 0 0 0 chrX 101031164 101031191 -61568739 + AT_rich Low_complexity Low_complexity 1 27 0 854 228 37 75 chrX 101031355 101031748 -61568182 + MLT1B LTR MaLR 21 465 -2 1538 231 24 19 chrX 101031766 101032190 -61567740 + MLT1B-int LTR MaLR 17 442 -929 3141 181 51 3 chrX 101032197 101032789 -61567141 + MER39B LTR ERV1 1 620 -33 2751 193 39 31 chrX 101032792 101033408 -61566522 + MER39B-int LTR ERV1 1 621 -5710 3110 155 8 21 chrX 101033410 101033944 -61565986 + MER1A DNA MER1_type 1 527 0 1880 219 92 18 chrX 101033996 101034508 -61565422 + MER39B-int LTR ERV1 833 1382 -4949 1022 186 75 81 chrX 101034632 101034927 -61565003 + MER39B-int LTR ERV1 1371 1663 -4668 4922 140 19 5 chrX 101034940 101035343 -61564587 + L1P3 LINE L1 5 426 -6035 329 43 21 0 chrX 101035343 101035390 -61564540 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4922 140 19 5 chrX 101035390 101035755 -61564175 + L1P3 LINE L1 426 784 -5677 258 215 0 31 chrX 101035757 101035822 -61564108 - MLT1B LTR MaLR -28 439 377 * 740 259 16 5 chrX 101035811 101035996 -61563934 - MLT1B LTR MaLR -203 187 1 1416 272 47 5 chrX 101036010 101036414 -61563516 - MLT1B-int LTR MaLR -1 1370 950 1330 270 47 26 chrX 101036729 101037151 -61562779 - MLT1B-int LTR MaLR -487 884 454 3474 166 17 12 chrX 101037162 101037812 -61562118 - MER39B LTR ERV1 0 653 1 678 245 8 68 chrX 101037874 101038111 -61561819 - MER39B-int LTR ERV1 -148 6183 5961 11809 168 39 41 chrX 101038169 101039517 -61560413 - MER39B-int LTR ERV1 -386 5945 4595 2181 136 0 0 chrX 101039517 101039827 -61560103 + AluSg SINE Alu 1 310 0 11809 168 39 41 chrX 101039827 101041386 -61558544 - MER39B-int LTR ERV1 -1736 4595 2963 502 229 81 88 chrX 101041134 101041418 -61558512 - LTR57-int LTR ERVL -4181 1162 881 * 633 225 12 36 chrX 101041432 101041662 -61558268 - MER39B-int LTR ERV1 -4231 2921 1350 263 133 100 17 chrX 101041733 101041793 -61558137 - MER83B-int LTR ERV1 -2614 2266 2202 363 73 0 0 chrX 101041794 101041849 -61558081 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 6744 83 9 2 chrX 101041870 101044532 -61555398 - L1PA7 LINE L1 -1 6153 3300 230 140 20 0 chrX 101044829 101044879 -61555051 + LTR66 LTR ERVL 403 453 -157 244 316 20 0 chrX 101044891 101044989 -61554941 - L1M4 LINE L1 -3353 2793 2694 1398 207 27 14 chrX 101046068 101046194 -61553736 + AluJb SINE Alu 1 124 -188 279 0 0 0 chrX 101046194 101046225 -61553705 + (CA)n Simple_repeat Simple_repeat 2 32 0 1398 207 27 14 chrX 101046225 101046393 -61553537 + AluJb SINE Alu 124 299 -13 216 155 56 14 chrX 101046394 101046465 -61553465 + (TA)n Simple_repeat Simple_repeat 2 75 0 427 248 116 85 chrX 101047347 101047666 -61552264 + MLT1H1 LTR MaLR 37 365 -190 527 262 19 19 chrX 101049303 101049463 -61550467 - MIR SINE MIR -34 174 13 300 243 19 48 chrX 101049730 101049833 -61550097 - MER94 DNA DNA -34 100 1 553 248 50 71 chrX 101050439 101050637 -61549293 - LTR49-int LTR ERV1 -4766 1565 1372 1906 207 98 14 chrX 101050762 101051250 -61548680 - LTR49-int LTR ERV1 -4948 1383 855 2050 117 7 13 chrX 101051335 101051643 -61548287 - MER1A DNA MER1_type 0 529 224 1060 199 12 107 chrX 101051688 101052034 -61547896 + MLT1B LTR MaLR 76 388 -2 2600 271 34 27 chrX 101052036 101052483 -61547447 + MLT1B-int LTR MaLR 1 443 -928 3285 199 19 3 chrX 101052483 101053126 -61546804 + MER39B LTR ERV1 1 653 0 2600 271 34 27 chrX 101053126 101053559 -61546371 + MLT1B-int LTR MaLR 443 887 -484 1251 293 38 8 chrX 101053872 101054264 -61545666 + MLT1B-int LTR MaLR 950 1353 -18 583 264 63 6 chrX 101054293 101054467 -61545463 + MLT1B LTR MaLR 4 187 -280 309 202 48 48 chrX 101054469 101054553 -61545377 + MLT1B LTR MaLR 305 388 -2 284 264 19 9 chrX 101056040 101056146 -61543784 - L1MCc LINE L1 -6293 130 24 432 262 9 0 chrX 101057032 101057139 -61542791 - Charlie1b DNA MER1_type -314 209 102 2066 123 0 17 chrX 101059032 101059332 -61540598 - AluJb SINE Alu -17 295 1 369 62 0 0 chrX 101059394 101059442 -61540488 + (TA)n Simple_repeat Simple_repeat 2 49 0 282 73 0 0 chrX 101059507 101059548 -61540382 + (CA)n Simple_repeat Simple_repeat 2 42 0 2975 143 15 0 chrX 101060144 101060611 -61539319 - MER101 LTR ERV1 0 474 1 2232 97 10 0 chrX 101060651 101060949 -61538981 + AluSc SINE Alu 2 302 -7 298 197 53 0 chrX 101061274 101061350 -61538580 - MER94 DNA DNA -34 100 21 517 246 69 34 chrX 101061654 101061829 -61538101 - MIR SINE MIR -74 188 8 334 154 0 0 chrX 101062160 101062212 -61537718 + Tigger5 DNA MER2_type 1 52 -2271 332 233 0 0 chrX 101062184 101062257 -61537673 + Tigger5 DNA MER2_type 2251 2323 0 * 1251 182 85 133 chrX 101062451 101062825 -61537105 + MLT2D LTR ERVL 23 377 -37 545 0 15 0 chrX 101062825 101062890 -61537040 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 1251 182 85 133 chrX 101062890 101062927 -61537003 + MLT2D LTR ERVL 377 414 0 553 297 49 0 chrX 101063371 101063556 -61536374 - MIR SINE MIR -17 245 52 6766 80 7 3 chrX 101063573 101064579 -61535351 + L1PA8 LINE L1 5161 6170 -2 270 247 41 0 chrX 101065427 101065500 -61534430 + L3 LINE CR1 679 754 -823 279 270 115 46 chrX 101065570 101065744 -61534186 + L3 LINE CR1 1189 1374 -203 2084 125 0 0 chrX 101066016 101066392 -61533538 + AluSg SINE Alu 1 376 0 1922 149 3 7 chrX 101066555 101066850 -61533080 + AluJo SINE Alu 1 294 -18 1162 213 108 28 chrX 101066927 101067288 -61532642 - MLT1B LTR MaLR 0 390 1 237 267 38 57 chrX 101067539 101067644 -61532286 + MIR3 SINE MIR 92 194 -14 2286 95 0 3 chrX 101069323 101069618 -61530312 - AluSx SINE Alu -16 296 3 203 160 0 60 chrX 101073322 101073372 -61526558 - L2 LINE L2 -4 3309 3263 20845 188 34 28 chrX 101073575 101075950 -61523980 - L1PA13 LINE L1 -14 7587 5229 225 0 0 0 chrX 101075950 101075975 -61523955 + (TTG)n Simple_repeat Simple_repeat 3 27 0 20845 188 34 28 chrX 101075975 101080887 -61519043 - L1PA13 LINE L1 -2372 5229 7 5167 229 65 150 chrX 101081014 101081617 -61518313 + L2 LINE L2 19 671 -2642 467 239 68 8 chrX 101081617 101081734 -61518196 + FLAM_A SINE Alu 1 124 -9 5167 229 65 150 chrX 101081734 101082539 -61517391 + L2 LINE L2 671 1542 -1771 1758 139 187 9 chrX 101082539 101082870 -61517060 + MLT1B LTR MaLR 1 390 0 5167 229 65 150 chrX 101082870 101085056 -61514874 + L2 LINE L2 1542 3309 -4 1019 293 113 21 chrX 101085146 101085614 -61514316 - L1ME3A LINE L1 -289 5881 5338 2606 70 43 13 chrX 101085614 101085988 -61513942 - L1PA7 LINE L1 -1 6153 5769 1019 293 113 21 chrX 101085988 101086150 -61513780 - L1ME3A LINE L1 -832 5338 5192 2426 188 84 31 chrX 101086290 101086870 -61513060 - L1ME3A LINE L1 -9 6161 5551 248 311 25 83 chrX 101087218 101087358 -61512572 - L1ME3A LINE L1 -1497 4649 4502 1429 249 49 24 chrX 101087358 101087808 -61512122 + LTR40c LTR ERVL 1 461 -4 248 311 25 83 chrX 101087808 101087992 -61511938 - L1ME3A LINE L1 -1644 4502 4344 195 254 103 63 chrX 101088126 101088156 -61511774 - L2 LINE L2 -3 3310 3283 1664 180 81 54 chrX 101088156 101088601 -61511329 + MSTB2 LTR MaLR 1 457 0 195 254 103 63 chrX 101088601 101088696 -61511234 - L2 LINE L2 -30 3283 3180 1915 122 56 0 chrX 101088735 101089023 -61510907 + AluSx SINE Alu 1 304 -8 301 272 257 25 chrX 101089361 101089563 -61510367 + MIR SINE MIR 2 250 -12 308 357 55 26 chrX 101089892 101090256 -61509674 - L2 LINE L2 -173 3099 2725 381 271 31 0 chrX 101090431 101090527 -61509403 - L2 LINE L2 0 3272 3174 388 280 107 0 chrX 101090555 101090705 -61509225 - L2 LINE L2 -880 2434 2269 1556 276 49 19 chrX 101091214 101092244 -61507686 + L1ME3A LINE L1 4672 5734 -436 * 2343 138 2 23 chrX 101092237 101092634 -61507296 + L1MA4 LINE L1 5436 5824 -476 30925 105 8 25 chrX 101092645 101093051 -61506879 + L1PA7 LINE L1 8 419 -6050 384 59 0 0 chrX 101093051 101093102 -61506828 + (TTG)n Simple_repeat Simple_repeat 2 52 0 30925 105 8 25 chrX 101093102 101097667 -61502263 + L1PA7 LINE L1 419 4942 -1527 2378 93 3 0 chrX 101097667 101097969 -61501961 + AluSp SINE Alu 1 303 -10 30925 105 8 25 chrX 101097969 101099472 -61500458 + L1PA7 LINE L1 4942 6469 0 2788 126 23 29 chrX 101099472 101099952 -61499978 + L1MA4 LINE L1 5814 6293 -7 192 152 0 0 chrX 101099964 101099997 -61499933 + A-rich Low_complexity Low_complexity 1 33 0 417 246 101 39 chrX 101099998 101100177 -61499753 + L1ME3A LINE L1 5723 5912 -254 483 272 56 12 chrX 101100407 101100569 -61499361 - L2 LINE L2 -1878 1436 1268 4657 164 51 10 chrX 101101343 101102171 -61497759 - MER21B LTR ERV1 -1 862 1 418 215 42 105 chrX 101102297 101102488 -61497442 + L1MC4 LINE L1 7864 8042 0 342 123 0 0 chrX 101103044 101103101 -61496829 + (TTA)n Simple_repeat Simple_repeat 1 57 0 317 332 47 16 chrX 101103458 101103648 -61496282 - L2 LINE L2 -204 3068 2873 1054 41 0 0 chrX 101103794 101103954 -61495976 + L1PA3 LINE L1 6011 6170 0 821 238 14 31 chrX 101106418 101106641 -61493289 - MER20 DNA MER1_type 0 219 1 262 259 32 65 chrX 101107270 101107455 -61492475 + (CATCC)n Simple_repeat Simple_repeat 2 180 0 249 342 26 0 chrX 101108141 101108255 -61491675 + MIR3 SINE MIR 64 180 -28 406 259 54 36 chrX 101108485 101108651 -61491279 + MIR SINE MIR 18 186 -76 502 274 149 19 chrX 101109632 101109840 -61490090 + MIR SINE MIR 25 259 -3 7809 47 6 0 chrX 101109859 101111583 -61488347 + L1PA5 LINE L1 4409 6139 -15 217 0 29 29 chrX 101111588 101111622 -61488308 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 621 148 0 0 chrX 101111635 101111736 -61488194 + AluY SINE Alu 211 311 0 530 279 30 19 chrX 101111843 101112050 -61487880 + MIR SINE MIR 16 218 -44 348 295 12 58 chrX 101113354 101113527 -61486403 + MER5A DNA MER1_type 3 167 -22 235 343 128 0 chrX 101113546 101113648 -61486282 + MIR SINE MIR 15 129 -133 332 231 0 44 chrX 101113975 101114066 -61485864 + MIR SINE MIR 67 153 -109 234 0 0 0 chrX 101116121 101116147 -61483783 + (TA)n Simple_repeat Simple_repeat 1 26 0 222 37 0 0 chrX 101116149 101116176 -61483754 + (TG)n Simple_repeat Simple_repeat 2 28 0 1104 196 35 136 chrX 101116318 101116746 -61483184 + MLT1B LTR MaLR 4 388 -2 1592 239 10 7 chrX 101116772 101117182 -61482748 + MLT1B-int LTR MaLR 32 442 -929 3358 158 46 22 chrX 101117189 101117731 -61482199 + MER39B LTR ERV1 1 561 -92 2354 59 21 0 chrX 101117731 101118019 -61481911 - AluY SINE Alu -17 294 1 3358 158 46 22 chrX 101118019 101118079 -61481851 + MER39B LTR ERV1 561 618 -35 2937 178 44 42 chrX 101118084 101118702 -61481228 + MER39B-int LTR ERV1 1 613 -5718 3153 163 29 8 chrX 101118702 101119218 -61480712 + MER1A DNA MER1_type 1 527 0 2937 178 44 42 chrX 101119218 101119257 -61480673 + MER39B-int LTR ERV1 613 650 -5681 2102 200 80 10 chrX 101119313 101119798 -61480132 + MER39B-int LTR ERV1 871 1389 -4942 1021 231 62 55 chrX 101120748 101120909 -61479021 - Charlie1b DNA MER1_type -2254 507 349 2338 64 0 7 chrX 101120909 101121236 -61478694 + AluY SINE Alu 2 311 0 1021 231 62 55 chrX 101121236 101121477 -61478453 - Charlie1b DNA MER1_type -2412 349 102 1282 223 41 16 chrX 101121784 101122102 -61477828 - MER101 LTR ERV1 0 474 149 192 152 0 0 chrX 101124448 101124481 -61475449 + GA-rich Low_complexity Low_complexity 3 35 0 375 282 212 26 chrX 101125096 101125307 -61474623 + L1MDa LINE L1 1658 1829 -4711 1639 267 42 2 chrX 101125307 101125738 -61474192 + LTR16A LTR ERVL 1 448 -2 375 282 212 26 chrX 101125738 101125866 -61474064 + L1MDa LINE L1 1829 2060 -4480 2402 156 32 40 chrX 101126043 101126517 -61473413 + MER101 LTR ERV1 5 474 0 1930 199 80 14 chrX 101126610 101127033 -61472897 + MSTB2 LTR MaLR 7 457 0 1806 39 0 0 chrX 101127785 101128013 -61471917 + L1PA4 LINE L1 5940 6167 0 260 279 101 57 chrX 101129488 101129646 -61470284 + Charlie1b DNA MER1_type 47 211 -312 44350 45 2 1 chrX 101130201 101136349 -61463581 + L1PA3 LINE L1 3 6155 0 33049 112 25 25 chrX 101136372 101137085 -61462845 - LTR25-int LTR ERV1 -1489 5507 4796 2553 25 0 0 chrX 101137085 101137367 -61462563 + L1PA4 LINE L1 5871 6152 -3 33049 112 25 25 chrX 101137367 101142158 -61457772 - LTR25-int LTR ERV1 -2200 4796 1 5425 103 39 1 chrX 101142163 101142942 -61456988 - LTR25 LTR ERV1 -3 788 1 2669 210 51 27 chrX 101142980 101143528 -61456402 + REP3 LTR ERV 2 562 0 315 281 70 44 chrX 101143662 101143776 -61456154 - MIR SINE MIR -126 136 20 487 243 64 1 chrX 101144224 101144395 -61455535 + L1MC4a LINE L1 5680 5856 -322 659 279 74 9 chrX 101144706 101144921 -61455009 + MER102b DNA MER1_type 84 312 -29 454 136 0 0 chrX 101145265 101145331 -61454599 + L1PA16 LINE L1 6090 6155 -11 579 236 92 20 chrX 101145558 101145753 -61454177 + MER3 DNA MER1_type 1 209 0 653 224 73 20 chrX 101145928 101146153 -61453777 + MIR SINE MIR 1 236 -26 16222 114 37 12 chrX 101146159 101147903 -61452027 + Tigger1 DNA MER2_type 1 1821 -597 7289 57 6 0 chrX 101147903 101149516 -61450414 - L1PA6 LINE L1 -11 6143 4516 16222 114 37 12 chrX 101149516 101150130 -61449800 + Tigger1 DNA MER2_type 1821 2418 0 314 305 0 0 chrX 101150561 101150643 -61449287 + MIR SINE MIR 61 142 -120 1896 166 3 3 chrX 101150936 101151243 -61448687 - AluJo SINE Alu -3 309 3 792 263 136 5 chrX 101151303 101151516 -61448414 - MIR SINE MIR -20 242 2 641 253 82 0 chrX 101151519 101151665 -61448265 - MIR SINE MIR -70 192 35 235 235 82 0 chrX 101151716 101151801 -61448129 + MER113 DNA MER1_type? 44 135 -386 1378 139 39 10 chrX 101151888 101152096 -61447834 + L1PB4 LINE L1 5942 6155 -1 261 295 0 0 chrX 101152106 101152167 -61447763 + MER113 DNA MER1_type? 453 513 -8 1647 164 57 97 chrX 101152558 101153053 -61446877 + L1MA9 LINE L1 5676 6150 -162 183 100 0 0 chrX 101153054 101153084 -61446846 + (CA)n Simple_repeat Simple_repeat 1 30 0 317 146 0 0 chrX 101153109 101153157 -61446773 + MER101 LTR ERV1 152 199 -275 1590 217 6 3 chrX 101153189 101153507 -61446423 + MER101 LTR ERV1 152 470 -4 21 0 0 0 chrX 101153550 101153571 -61446359 + AT_rich Low_complexity Low_complexity 1 21 0 365 260 49 61 chrX 101153578 101153824 -61446106 + L1M4 LINE L1 2703 2945 -3201 201 278 0 0 chrX 101153860 101153914 -61446016 + T-rich Low_complexity Low_complexity 1 54 0 463 195 26 78 chrX 101153914 101154068 -61445862 + L1MA7 LINE L1 6054 6199 -92 3375 39 3 0 chrX 101154087 101154472 -61445458 - L1PA4 LINE L1 0 6155 5770 24860 27 0 0 chrX 101154476 101158032 -61441898 - L1PA2 LINE L1 0 6155 2600 447 209 42 105 chrX 101158254 101158445 -61441485 + L1MC4 LINE L1 7864 8042 0 396 111 0 0 chrX 101159001 101159064 -61440866 + (TTA)n Simple_repeat Simple_repeat 1 63 0 370 332 47 16 chrX 101159421 101159611 -61440319 - L2 LINE L2 -204 3068 2873 1055 41 0 0 chrX 101159757 101159917 -61440013 + L1PA3 LINE L1 6011 6170 0 892 238 14 31 chrX 101162382 101162605 -61437325 - MER20 DNA MER1_type 0 219 1 262 259 32 65 chrX 101163234 101163419 -61436511 + (CATCC)n Simple_repeat Simple_repeat 2 180 0 284 331 38 8 chrX 101164086 101164219 -61435711 + MIR3 SINE MIR 44 180 -28 457 253 54 36 chrX 101164449 101164615 -61435315 + MIR SINE MIR 18 186 -76 190 317 83 110 chrX 101165112 101165484 -61434446 - L2 LINE L2 -13 3259 2898 567 274 149 19 chrX 101165596 101165804 -61434126 + MIR SINE MIR 25 259 -3 8165 47 6 0 chrX 101165823 101167547 -61432383 + L1PA5 LINE L1 4409 6139 -15 217 0 29 29 chrX 101167552 101167586 -61432344 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 678 82 0 0 chrX 101167599 101167684 -61432246 + AluY SINE Alu 211 295 -16 585 279 30 19 chrX 101167807 101168014 -61431916 + MIR SINE MIR 16 218 -44 400 295 12 58 chrX 101169320 101169493 -61430437 + MER5A DNA MER1_type 3 167 -22 265 343 128 0 chrX 101169512 101169614 -61430316 + MIR SINE MIR 15 129 -133 359 231 0 44 chrX 101169941 101170032 -61429898 + MIR SINE MIR 67 153 -109 342 0 0 0 chrX 101172087 101172125 -61427805 + (TA)n Simple_repeat Simple_repeat 1 38 0 222 37 0 0 chrX 101172127 101172154 -61427776 + (TG)n Simple_repeat Simple_repeat 2 28 0 1181 206 28 127 chrX 101172294 101172721 -61427209 + MLT1B LTR MaLR 4 388 -2 1608 239 10 7 chrX 101172747 101173157 -61426773 + MLT1B-int LTR MaLR 32 442 -929 3367 163 43 18 chrX 101173164 101173706 -61426224 + MER39B LTR ERV1 1 561 -92 2371 59 17 0 chrX 101173706 101173995 -61425935 - AluY SINE Alu -17 294 1 3367 163 43 18 chrX 101173995 101174055 -61425875 + MER39B LTR ERV1 561 618 -35 2961 184 35 47 chrX 101174060 101174678 -61425252 + MER39B-int LTR ERV1 1 612 -5719 3153 163 29 8 chrX 101174678 101175194 -61424736 + MER1A DNA MER1_type 1 527 0 2961 184 35 47 chrX 101175194 101175233 -61424697 + MER39B-int LTR ERV1 612 650 -5681 2102 200 80 10 chrX 101175289 101175774 -61424156 + MER39B-int LTR ERV1 871 1389 -4942 1021 231 62 55 chrX 101176724 101176885 -61423045 - Charlie1b DNA MER1_type -2254 507 349 2338 64 0 7 chrX 101176885 101177212 -61422718 + AluY SINE Alu 2 311 0 1021 231 62 55 chrX 101177212 101177453 -61422477 - Charlie1b DNA MER1_type -2412 349 102 1188 208 39 57 chrX 101177760 101177804 -61422126 - MER101 LTR ERV1 0 474 431 2930 6 0 0 chrX 101177804 101178116 -61421814 - AluYb8 SINE Alu -6 312 1 1188 208 39 57 chrX 101178116 101178403 -61421527 - MER101 LTR ERV1 -43 431 149 192 152 0 0 chrX 101180749 101180782 -61419148 + GA-rich Low_complexity Low_complexity 3 35 0 375 282 212 26 chrX 101181398 101181609 -61418321 + L1MDa LINE L1 1658 1829 -4711 1661 264 42 2 chrX 101181609 101182040 -61417890 + LTR16A LTR ERVL 1 448 -2 375 282 212 26 chrX 101182040 101182168 -61417762 + L1MDa LINE L1 1829 2060 -4480 2402 156 32 40 chrX 101182345 101182819 -61417111 + MER101 LTR ERV1 5 474 0 1930 199 80 14 chrX 101182912 101183335 -61416595 + MSTB2 LTR MaLR 7 457 0 1806 39 0 0 chrX 101184087 101184315 -61415615 + L1PA4 LINE L1 5940 6167 0 265 338 57 6 chrX 101185789 101185946 -61413984 + Charlie1b DNA MER1_type 47 211 -312 43840 54 8 1 chrX 101186501 101192229 -61407701 + L1PA4 LINE L1 3 5784 -347 43740 33 21 1 chrX 101192230 101198261 -61401669 + L1PA2 LINE L1 1 6155 0 3375 39 3 0 chrX 101198265 101198650 -61401280 + L1PA4 LINE L1 5770 6155 0 476 188 26 78 chrX 101198669 101198823 -61401107 - L1MA7 LINE L1 -92 6199 6054 201 278 0 0 chrX 101198823 101198877 -61401053 + A-rich Low_complexity Low_complexity 1 54 0 365 260 49 61 chrX 101198913 101199159 -61400771 - L1M4 LINE L1 -3201 2945 2703 21 0 0 0 chrX 101199166 101199187 -61400743 + AT_rich Low_complexity Low_complexity 1 21 0 1590 217 6 3 chrX 101199230 101199548 -61400382 - MER101 LTR ERV1 -4 470 152 317 146 0 0 chrX 101199580 101199628 -61400302 - MER101 LTR ERV1 -275 199 152 1731 163 56 95 chrX 101199673 101200177 -61399753 - L1MA9 LINE L1 -153 6159 5676 261 295 0 0 chrX 101200568 101200629 -61399301 - MER113 DNA MER1_type? -8 513 453 1378 139 39 10 chrX 101200639 101200847 -61399083 - L1PB4 LINE L1 -1 6155 5942 235 235 82 0 chrX 101200934 101201019 -61398911 - MER113 DNA MER1_type? -386 135 44 641 253 82 0 chrX 101201070 101201216 -61398714 + MIR SINE MIR 35 192 -70 792 263 136 5 chrX 101201219 101201432 -61398498 + MIR SINE MIR 2 242 -20 1896 166 3 3 chrX 101201492 101201799 -61398131 + AluJo SINE Alu 3 309 -3 314 305 0 0 chrX 101202092 101202174 -61397756 - MIR SINE MIR -120 142 61 16165 115 37 12 chrX 101202605 101203219 -61396711 - Tigger1 DNA MER2_type 0 2418 1821 7289 57 17 0 chrX 101203219 101204832 -61395098 + L1PA6 LINE L1 4516 6143 -11 16165 115 37 12 chrX 101204832 101206576 -61393354 - Tigger1 DNA MER2_type -597 1821 1 653 224 73 20 chrX 101206582 101206807 -61393123 - MIR SINE MIR -26 236 1 579 236 92 20 chrX 101206982 101207177 -61392753 - MER3 DNA MER1_type 0 209 1 454 136 0 0 chrX 101207404 101207470 -61392460 - L1PA16 LINE L1 -11 6155 6090 659 279 74 9 chrX 101207814 101208029 -61391901 - MER102a DNA MER1_type -29 301 73 228 233 55 0 chrX 101208189 101208262 -61391668 - L1ME4a LINE L1 -82 6039 5963 487 243 64 1 chrX 101208340 101208511 -61391419 - L1MC4a LINE L1 -322 5856 5680 315 281 70 44 chrX 101208959 101209073 -61390857 + MIR SINE MIR 20 136 -126 2669 210 51 27 chrX 101209207 101209755 -61390175 - REP3 LTR ERV 0 562 2 5420 103 39 1 chrX 101209793 101210572 -61389358 + LTR25 LTR ERV1 1 566 -3 33079 111 25 25 chrX 101210577 101215372 -61384558 + LTR25-int LTR ERV1 1 4795 -2201 2553 25 0 0 chrX 101215372 101215654 -61384276 - L1PA4 LINE L1 -3 6152 5871 33079 111 25 25 chrX 101215654 101216367 -61383563 + LTR25-int LTR ERV1 4795 5507 -1489 25897 31 6 1 chrX 101216390 101222066 -61377864 - L1PA3 LINE L1 0 6155 442 8024 112 6 35 chrX 101222079 101222869 -61377061 + LTR25-int LTR ERV1 4332 5143 -1853 2226 108 7 3 chrX 101222869 101223175 -61376755 + AluSx SINE Alu 2 308 -4 279 0 0 0 chrX 101223175 101223206 -61376724 + (TA)n Simple_repeat Simple_repeat 2 32 0 8024 112 6 35 chrX 101223206 101223660 -61376270 + LTR25-int LTR ERV1 5142 5607 -1389 2405 70 0 10 chrX 101223660 101223958 -61375972 + AluY SINE Alu 1 295 -16 8024 112 6 35 chrX 101223958 101224276 -61375654 + LTR25-int LTR ERV1 5607 6996 0 4255 152 29 25 chrX 101224276 101225061 -61374869 + LTR25 LTR ERV1 1 788 -6 744 278 17 6 chrX 101225175 101225348 -61374582 + MIR SINE MIR 23 197 -65 375 278 47 38 chrX 101225708 101225920 -61374010 + L1ME LINE L1 5384 5597 -524 294 237 66 0 chrX 101225920 101225996 -61373934 + MIR SINE MIR 97 177 -85 636 140 0 0 chrX 101225998 101226098 -61373832 - LTR40b LTR ERVL -2 460 361 723 175 0 2 chrX 101226100 101226343 -61373587 + AluJb SINE Alu 5 298 -14 1232 276 25 35 chrX 101226343 101226778 -61373152 - LTR40a LTR ERVL -88 431 1 1387 202 37 12 chrX 101226778 101227106 -61372824 - HERVL40 LTR ERVL 0 5530 2783 391 379 22 6 chrX 101227075 101227397 -61372533 - MER89-int LTR ERV1 -395 6406 6080 * 16752 193 50 17 chrX 101227460 101230471 -61369459 - HERVL40 LTR ERVL -1670 3860 688 196 225 0 0 chrX 101230471 101230511 -61369419 + L2 LINE L2 1629 1668 -1646 16752 193 50 17 chrX 101230511 101230785 -61369145 - HERVL40 LTR ERVL -4842 688 425 1963 161 68 32 chrX 101230785 101231226 -61368704 - LTR2B LTR ERV1 0 490 34 2099 177 28 26 chrX 101231250 101231679 -61368251 - HERVL40 LTR ERVL -5100 430 1 839 303 73 20 chrX 101231705 101232062 -61367868 - LTR40a LTR ERVL -49 470 95 3545 98 96 7 chrX 101232064 101232648 -61367282 + LTR9B LTR ERV1 9 644 0 609 167 0 0 chrX 101232648 101232749 -61367181 - LTR40b LTR ERVL -361 101 1 1842 152 19 0 chrX 101233395 101233718 -61366212 + L1MC3 LINE L1 6685 7013 -772 180 111 0 0 chrX 101233720 101233747 -61366183 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 3799 154 19 4 chrX 101233748 101234451 -61365479 + L1MC3 LINE L1 7063 7775 -10 202 286 209 22 chrX 101234492 101234583 -61365347 + L2 LINE L2 2949 3056 -216 424 321 51 7 chrX 101234751 101234888 -61365042 - L2 LINE L2 -2 3270 3128 497 290 162 11 chrX 101234935 101235135 -61364795 - MIR SINE MIR -27 235 10 311 185 19 0 chrX 101235140 101235194 -61364736 + L2 LINE L2 3257 3311 -2 200 322 0 0 chrX 101235563 101235622 -61364308 - L2 LINE L2 -3 3310 3252 13330 42 0 1 chrX 101235686 101238097 -61361833 - L1PA5 LINE L1 -4 6150 3747 1192 50 0 0 chrX 101238099 101238260 -61361670 - L1PA5 LINE L1 -3063 3083 2923 2121 227 58 0 chrX 101238295 101238846 -61361084 + L1ME3A LINE L1 5396 5978 -192 636 122 0 0 chrX 101238848 101238938 -61360992 + 5S rRNA rRNA 1 90 -31 476 174 204 36 chrX 101238942 101239109 -61360821 + L1ME3A LINE L1 5970 6164 -6 228 341 8 53 chrX 101239153 101239285 -61360645 - MER5A DNA MER1_type -1 188 63 208 281 79 34 chrX 101239444 101239533 -61360397 - MIR3 SINE MIR -27 181 89 419 283 14 58 chrX 101240306 101240444 -61359486 - MER5A DNA MER1_type -2 187 56 2296 88 7 14 chrX 101240768 101241065 -61358865 + AluSp SINE Alu 1 295 -18 275 178 82 14 chrX 101241279 101241352 -61358578 - MIR SINE MIR -139 123 46 530 172 0 10 chrX 101241753 101241852 -61358078 + MIR SINE MIR 90 187 -75 726 305 88 36 chrX 101241871 101242258 -61357672 - LTR33 LTR ERVL 0 521 115 2997 168 74 30 chrX 101242441 101242686 -61357244 - L1MB8 LINE L1 -140 6536 6303 4209 156 46 1 chrX 101242686 101243384 -61356546 - MER44D DNA MER2_type -3 602 2 2997 168 74 30 chrX 101243384 101244168 -61355762 - L1MB8 LINE L1 -373 6303 5465 198 71 0 0 chrX 101244725 101244753 -61355177 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 213 308 64 0 chrX 101245035 101245113 -61354817 + L2 LINE L2 3170 3252 -20 353 304 10 10 chrX 101245130 101245232 -61354698 + MIR SINE MIR 51 152 -110 344 269 85 35 chrX 101245677 101245818 -61354112 - MER5A DNA MER1_type -36 153 6 2181 117 0 22 chrX 101245972 101246288 -61353642 + AluSc SINE Alu 1 309 0 22 56 0 0 chrX 101246595 101246631 -61353299 + AT_rich Low_complexity Low_complexity 1 36 0 303 253 13 13 chrX 101247595 101247674 -61352256 - Charlie4 DNA MER1_type -1 1960 1882 2294 219 13 18 chrX 101247977 101248593 -61351337 - L1MB8 LINE L1 -1279 5365 4753 4000 206 34 7 chrX 101248604 101249517 -61350413 - L1MA9 LINE L1 -38 6274 5337 1389 232 13 13 chrX 101249551 101249930 -61350000 - L1MB8 LINE L1 -1875 4769 4391 * 1815 260 4 22 chrX 101249927 101250420 -61349510 - L1MB8 LINE L1 -5951 591 108 340 314 32 32 chrX 101251381 101251537 -61348393 - MIR SINE MIR -83 179 24 3870 181 41 22 chrX 101251830 101253485 -61346445 - L1MB8 LINE L1 -144 6034 4349 205 115 19 19 chrX 101253542 101253594 -61346336 + (CA)n Simple_repeat Simple_repeat 2 53 0 2157 221 56 47 chrX 101253610 101254449 -61345481 - L1MC5 LINE L1 -540 7421 6564 462 220 40 20 chrX 101254902 101255052 -61344878 + MER103 DNA DNA 4 156 -10 276 30 0 0 chrX 101255218 101255251 -61344679 + (TG)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chrX 101255332 101255355 -61344575 + (TG)n Simple_repeat Simple_repeat 2 24 0 247 304 0 0 chrX 101255768 101255847 -61344083 + L3b LINE CR1 1144 1222 -361 291 114 19 177 chrX 101255938 101256096 -61343834 + Charlie7 DNA MER1_type 2440 2572 -40 22 0 0 0 chrX 101256230 101256252 -61343678 + AT_rich Low_complexity Low_complexity 1 22 0 672 321 32 56 chrX 101256271 101256679 -61343251 - L2 LINE L2 0 3313 2916 32 43 0 0 chrX 101257454 101257500 -61342430 + GC_rich Low_complexity Low_complexity 1 46 0 274 163 20 0 chrX 101260449 101260498 -61339432 + L3 LINE CR1 1520 1569 -8 367 301 42 57 chrX 101260730 101260923 -61339007 - MIR SINE MIR -71 191 2 24 67 0 0 chrX 101261707 101261752 -61338178 + AT_rich Low_complexity Low_complexity 1 45 0 2049 154 0 10 chrX 101261794 101262106 -61337824 + AluJb SINE Alu 2 310 -2 23 33 0 0 chrX 101262430 101262460 -61337470 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chrX 101262630 101262660 -61337270 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chrX 101264735 101264764 -61335166 + AT_rich Low_complexity Low_complexity 1 29 0 749 300 104 21 chrX 101265539 101265819 -61334111 + L3 LINE CR1 1274 1576 -1 269 336 9 0 chrX 101267486 101267593 -61332337 - MER117 DNA MER1_type -53 144 37 532 198 19 0 chrX 101267662 101267768 -61332162 - FRAM SINE Alu -5 171 64 808 111 24 0 chrX 101267851 101267977 -61331953 + L1PB4 LINE L1 6028 6156 0 1065 172 0 0 chrX 101268582 101268745 -61331185 - AluJb SINE Alu -19 293 131 546 16 0 0 chrX 101268745 101268808 -61331122 + (TG)n Simple_repeat Simple_repeat 2 64 0 2020 114 4 0 chrX 101268808 101269089 -61330841 - AluSx SINE Alu -28 284 3 183 351 157 8 chrX 101269164 101269298 -61330632 + L3b LINE CR1 1430 1583 0 1884 162 36 19 chrX 101269528 101269887 -61330043 - MLT1A1 LTR MaLR 0 365 1 956 258 114 63 chrX 101270852 101271597 -61328333 - L1ME4a LINE L1 -1 6120 5338 223 140 0 40 chrX 101272124 101272174 -61327756 + (TA)n Simple_repeat Simple_repeat 1 48 0 24343 78 5 7 chrX 101272174 101276206 -61323724 - L1PA7 LINE L1 -9 6145 2123 613 140 0 0 chrX 101276207 101276307 -61323623 + AluSc SINE Alu 209 308 -1 261 255 19 85 chrX 101276471 101276540 -61323390 - MIR3 SINE MIR -20 188 127 1785 132 64 17 chrX 101276540 101276835 -61323095 + AluSg SINE Alu 2 310 0 261 255 19 85 chrX 101276835 101276871 -61323059 - MIR3 SINE MIR -81 127 90 737 201 38 19 chrX 101277442 101277601 -61322329 + MLT1A1 LTR MaLR 1 162 -212 837 197 0 0 chrX 101277605 101277742 -61322188 + AluJb SINE Alu 140 276 -36 999 172 54 54 chrX 101277777 101277998 -61321932 + MLT1A1 LTR MaLR 145 365 0 483 316 129 45 chrX 101278506 101278863 -61321067 - L3 LINE CR1 -39 1538 1152 467 269 43 28 chrX 101279242 101279383 -61320547 + MER5A DNA MER1_type 25 167 -22 345 344 65 62 chrX 101279517 101279831 -61320099 + L2 LINE L2 2949 3266 -6 765 220 0 0 chrX 101279831 101279963 -61319967 + FLAM_A SINE Alu 1 132 -1 1443 193 46 85 chrX 101280093 101280160 -61319770 - MLT1A2 LTR MaLR 0 374 306 2224 90 4 0 chrX 101280160 101280439 -61319491 + AluSp SINE Alu 1 280 -33 186 43 0 0 chrX 101280439 101280462 -61319468 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1443 193 46 85 chrX 101280462 101280782 -61319148 - MLT1A2 LTR MaLR -66 308 1 639 263 171 0 chrX 101281386 101281591 -61318339 - MIR SINE MIR -3 259 20 348 269 8 82 chrX 101281626 101281760 -61318170 - MIR3 SINE MIR -78 130 7 238 352 14 21 chrX 101282342 101282487 -61317443 - L2 LINE L2 -565 2749 2606 248 365 19 9 chrX 101282814 101282921 -61317009 - L3 LINE CR1 -1053 524 417 8939 187 54 75 chrX 101282965 101283637 -61316293 + L1MB8 LINE L1 2450 3135 -3043 852 211 0 32 chrX 101283637 101283822 -61316108 + AluJo SINE Alu 123 301 -11 8939 187 54 75 chrX 101283822 101285196 -61314734 + L1MB8 LINE L1 3135 4536 -1642 204 40 0 0 chrX 101285196 101285221 -61314709 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 8939 187 54 75 chrX 101285221 101285884 -61314046 + L1MB8 LINE L1 4536 5211 -967 2075 129 3 0 chrX 101285884 101286186 -61313744 + AluSg SINE Alu 1 303 -7 8939 187 54 75 chrX 101286186 101287116 -61312814 + L1MB8 LINE L1 5211 6177 -1 622 120 8 8 chrX 101287459 101287576 -61312354 + (TC)n Simple_repeat Simple_repeat 2 118 0 873 255 17 26 chrX 101287977 101288208 -61311722 + MIR SINE MIR 6 234 -28 274 207 11 81 chrX 101289979 101290066 -61309864 + L1MC5 LINE L1 7831 7911 -50 266 202 161 101 chrX 101290239 101290407 -61309523 + Charlie7 DNA MER1_type 8 185 -2427 * 633 212 55 0 chrX 101290404 101290550 -61309380 + Charlie7 DNA MER1_type 1741 1894 -718 29 28 0 0 chrX 101290595 101290631 -61309299 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chrX 101290716 101290744 -61309186 + AT_rich Low_complexity Low_complexity 1 28 0 1453 217 119 18 chrX 101290790 101290821 -61309109 + Charlie7 DNA MER1_type 1988 2014 -598 2380 92 3 0 chrX 101290821 101291116 -61308814 + AluSg SINE Alu 1 296 -14 1453 217 119 18 chrX 101291116 101291572 -61308358 + Charlie7 DNA MER1_type 2014 2524 -88 536 223 176 7 chrX 101291641 101291789 -61308141 - MER5A DNA MER1_type -8 181 9 2208 136 77 54 chrX 101291954 101292381 -61307549 + MER101 LTR ERV1 6 442 -32 1720 135 55 17 chrX 101292384 101292673 -61307257 + AluJb SINE Alu 1 300 -12 883 219 0 0 chrX 101292710 101292897 -61307033 - AluJb SINE Alu -6 306 120 302 214 60 48 chrX 101293123 101293207 -61306723 + MIR SINE MIR 144 228 -34 1748 135 43 21 chrX 101293287 101293568 -61306362 - AluSx SINE Alu -25 287 1 396 267 9 9 chrX 101294639 101294744 -61305186 + L2 LINE L2 3199 3303 -10 300 316 12 71 chrX 101296893 101297061 -61302869 + MIR SINE MIR 45 202 -60 24 32 0 0 chrX 101297158 101297189 -61302741 + AT_rich Low_complexity Low_complexity 1 31 0 273 364 27 9 chrX 101299702 101299812 -61300118 + MIR SINE MIR 34 145 -63 22 0 0 0 chrX 101302624 101302646 -61297284 + AT_rich Low_complexity Low_complexity 1 22 0 2279 103 6 10 chrX 101304392 101304703 -61295227 + AluSq SINE Alu 1 310 -3 33 0 0 0 chrX 101304727 101304760 -61295170 + AT_rich Low_complexity Low_complexity 1 33 0 329 354 31 23 chrX 101304844 101304974 -61294956 - L2 LINE L2 -1 3271 3141 219 114 0 0 chrX 101305800 101305835 -61294095 + (TA)n Simple_repeat Simple_repeat 2 36 0 273 57 0 0 chrX 101309295 101309330 -61290600 + (CA)n Simple_repeat Simple_repeat 2 36 0 597 250 57 7 chrX 101310759 101310899 -61289031 + L3 LINE CR1 1425 1571 -6 539 231 97 43 chrX 101311515 101311701 -61288229 - MIR SINE MIR -46 216 21 189 171 0 0 chrX 101312165 101312200 -61287730 + (CA)n Simple_repeat Simple_repeat 1 35 0 200 263 0 0 chrX 101312977 101313015 -61286915 + C-rich Low_complexity Low_complexity 2 39 0 278 136 0 17 chrX 101315072 101315131 -61284799 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 1228 130 104 0 chrX 101316912 101317104 -61282826 + AluSg/x SINE Alu 90 301 -11 186 43 0 0 chrX 101317157 101317180 -61282750 + (TAA)n Simple_repeat Simple_repeat 3 25 0 601 176 17 59 chrX 101317441 101317560 -61282370 + MER81 DNA DNA 1 114 0 879 165 48 43 chrX 101317725 101317913 -61282017 - MER53 DNA DNA 0 189 1 200 339 0 0 chrX 101318157 101318219 -61281711 + MIR SINE MIR 10 71 -191 1970 139 3 7 chrX 101318268 101318563 -61281367 + AluJb SINE Alu 3 296 -16 1822 164 3 3 chrX 101319002 101319294 -61280636 - AluJb SINE Alu -14 298 7 2569 166 46 0 chrX 101319448 101319905 -61280025 + MER90 LTR ERV1 69 546 -68 257 239 165 9 chrX 101319906 101320015 -61279915 - MIR SINE MIR -64 198 73 423 0 0 0 chrX 101320250 101320297 -61279633 + (TG)n Simple_repeat Simple_repeat 2 48 0 2460 77 3 0 chrX 101320837 101321136 -61278794 + AluSg SINE Alu 1 300 -10 4339 93 4 86 chrX 101321438 101322161 -61277769 + MER4A LTR ERV1 1 664 0 2340 85 197 3 chrX 101322463 101322838 -61277092 + LTR7 LTR ERV1 1 448 -2 13794 125 11 27 chrX 101322840 101325671 -61274259 + HERVH LTR ERV1 1 2994 -4719 6010 151 130 111 chrX 101325655 101326709 -61273221 + HERVH LTR ERV1 3140 4408 -3305 * 1098 143 0 0 chrX 101326709 101326870 -61273060 + AluSq SINE Alu 148 308 -5 6010 151 130 111 chrX 101326870 101327627 -61272303 + HERVH LTR ERV1 4408 5149 -2564 1407 106 13 18 chrX 101327624 101327851 -61272079 + HERVH LTR ERV1 5594 5819 -1894 * 2615 82 13 13 chrX 101327851 101328241 -61271689 + HERVH LTR ERV1 7324 7713 0 2127 82 53 6 chrX 101328241 101328611 -61271319 + LTR7 LTR ERV1 1 448 -2 2106 138 3 0 chrX 101328986 101329284 -61270646 + AluJb SINE Alu 2 300 -12 360 0 0 0 chrX 101329422 101329462 -61270468 + (A)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chrX 101329523 101329550 -61270380 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 783 218 19 19 chrX 101329561 101329717 -61270213 + FRAM SINE Alu 1 154 -22 2389 69 0 13 chrX 101329726 101330029 -61269901 + AluY SINE Alu 1 299 -12 1404 126 0 0 chrX 101330041 101330224 -61269706 + AluSp SINE Alu 1 183 -130 306 283 152 0 chrX 101330299 101330398 -61269532 - MIR SINE MIR -12 250 137 1860 150 67 25 chrX 101330600 101330960 -61268970 + THE1C LTR MaLR 1 375 0 952 210 0 6 chrX 101330960 101331141 -61268789 - LTR8 LTR ERV1 -5 686 507 2759 134 26 22 chrX 101331279 101331773 -61268157 - LTR8A LTR ERV1 -231 496 1 4352 143 20 4 chrX 101332033 101332731 -61267199 + MER50 LTR ERV1 1 709 -25 3908 184 36 40 chrX 101333263 101334087 -61265843 + MER21B LTR ERV1 40 860 -3 607 281 20 0 chrX 101334402 101334555 -61265375 - MIR SINE MIR -2 260 105 1308 82 0 0 chrX 101334616 101334774 -61265156 - AluSg/x SINE Alu -5 307 150 227 292 0 0 chrX 101335949 101335997 -61263933 + L2 LINE L2 3246 3293 -20 349 317 131 7 chrX 101336492 101336637 -61263293 - MIR3 SINE MIR -23 185 23 259 290 30 50 chrX 101336681 101336781 -61263149 - MIR SINE MIR -59 203 106 2352 88 3 0 chrX 101336803 101337115 -61262815 + AluSp SINE Alu 1 313 0 703 289 22 26 chrX 101337173 101337405 -61262525 + MIR SINE MIR 17 247 -15 189 0 0 0 chrX 101338310 101338331 -61261599 + (TTCTC)n Simple_repeat Simple_repeat 5 25 0 2252 110 7 3 chrX 101338563 101338973 -61260957 - AluSp SINE Alu 0 411 1 1044 193 208 50 chrX 101339396 101339738 -61260192 + MSTD LTR MaLR 1 396 0 231 333 0 13 chrX 101339820 101339898 -61260032 - MIR SINE MIR 0 262 186 182 65 65 0 chrX 101340019 101340050 -61259880 + T-rich Low_complexity Low_complexity 3 35 0 2364 92 0 3 chrX 101340111 101340403 -61259527 - AluSq SINE Alu -22 291 1 398 301 43 12 chrX 101340427 101340683 -61259247 - L1ME2 LINE L1 -235 5929 5666 931 74 25 0 chrX 101340713 101340834 -61259096 + AluSg SINE Alu 1 124 -186 834 107 0 0 chrX 101340833 101340954 -61258976 - AluSg SINE Alu -189 121 1 * 300 343 47 30 chrX 101340963 101341132 -61258798 - L1ME2 LINE L1 -1103 5043 4872 215 211 35 0 chrX 101341742 101341799 -61258131 + (TAA)n Simple_repeat Simple_repeat 2 60 0 205 278 167 0 chrX 101343655 101343709 -61256221 + L2 LINE L2 3190 3252 -20 1292 152 0 36 chrX 101343714 101343938 -61255992 - AluJo SINE Alu -10 302 87 475 328 57 29 chrX 101344026 101344258 -61255672 - MIR SINE MIR -12 250 17 412 310 21 8 chrX 101344498 101344661 -61255269 - MIR SINE MIR -63 145 31 556 218 36 0 chrX 101344759 101344869 -61255061 + FLAM_A SINE Alu 10 123 -19 2514 76 0 0 chrX 101345478 101345782 -61254148 + AluSx SINE Alu 1 304 -8 2250 110 7 0 chrX 101345782 101346091 -61253839 + AluSp SINE Alu 1 311 -2 2302 92 17 0 chrX 101346165 101346459 -61253471 + AluSg SINE Alu 1 299 -11 284 282 71 0 chrX 101346718 101346803 -61253127 + MIR SINE MIR 20 110 -152 1964 123 3 36 chrX 101346809 101347111 -61252819 + AluJb SINE Alu 11 302 -10 2332 120 8 1 chrX 101347150 101347520 -61252410 - LTR49 LTR ERV1 -175 447 1 657 200 20 13 chrX 101347520 101347669 -61252261 + MLT1A1 LTR MaLR 216 365 0 464 288 4 83 chrX 101347796 101348025 -61251905 - L2 LINE L2 0 3313 3103 1958 136 17 0 chrX 101348048 101348349 -61251581 + AluSx SINE Alu 1 306 -6 192 333 12 12 chrX 101348572 101348653 -61251277 + MER5A DNA MER1_type 7 87 -102 * 336 260 20 30 chrX 101348597 101348697 -61251233 - MER5A DNA MER1_type -20 169 71 182 220 186 17 chrX 101348717 101348776 -61251154 + MER5A DNA MER1_type 115 183 -6 2333 107 3 3 chrX 101348776 101349085 -61250845 - AluSx SINE Alu -3 309 1 2409 78 0 50 chrX 101349275 101349597 -61250333 - AluSp SINE Alu -7 306 1 415 224 24 0 chrX 101349626 101349711 -61250219 - MER81 DNA DNA 0 114 28 206 322 35 9 chrX 101350307 101350422 -61249508 + CT-rich Low_complexity Low_complexity 5 122 0 633 269 4 113 chrX 101350704 101350816 -61249114 - MIR SINE MIR -14 248 178 1725 133 0 0 chrX 101350816 101351057 -61248873 - AluSx SINE Alu -28 284 44 633 269 4 113 chrX 101351057 101351201 -61248729 - MIR SINE MIR -84 178 20 199 314 0 0 chrX 101351437 101351488 -61248442 - L2 LINE L2 -1 3271 3221 357 321 126 6 chrX 101352498 101352657 -61247273 + MIR3 SINE MIR 30 207 -1 1678 178 28 7 chrX 101353277 101353564 -61246366 + AluJb SINE Alu 1 293 -19 2290 103 3 3 chrX 101354364 101354666 -61245264 - AluSq SINE Alu -11 302 1 309 301 10 0 chrX 101356114 101356217 -61243713 + GA-rich Low_complexity Low_complexity 3 106 0 694 185 0 31 chrX 101356638 101356768 -61243162 + L2 LINE L2 3188 3313 0 216 280 191 94 chrX 101358989 101359361 -61240569 - L2 LINE L2 -6 3266 2859 236 283 11 70 chrX 101360103 101360290 -61239640 + GA-rich Low_complexity Low_complexity 2 177 0 482 288 16 0 chrX 101362642 101362767 -61237163 - MIR3 SINE MIR -20 188 62 735 333 5 5 chrX 101363350 101363569 -61236361 + MIR SINE MIR 6 224 -38 527 272 53 44 chrX 101364376 101364582 -61235348 + MIR SINE MIR 21 228 -34 351 259 103 46 chrX 101365926 101366100 -61233830 - MIR3 SINE MIR -5 203 20 249 257 131 91 chrX 101366623 101366798 -61233132 - MIR SINE MIR -3 259 78 587 297 115 19 chrX 101367696 101367905 -61232025 - MIR SINE MIR -14 248 20 635 275 16 48 chrX 101368461 101368650 -61231280 - MER5A DNA MER1_type 0 189 7 374 321 68 26 chrX 101368660 101368971 -61230959 + L1ME4a LINE L1 5592 5915 -206 749 280 44 16 chrX 101369050 101369300 -61230630 + MIR SINE MIR 3 259 -3 203 256 0 0 chrX 101369372 101369411 -61230519 + polypurine Low_complexity Low_complexity 2 40 0 713 286 100 12 chrX 101370005 101370246 -61229684 - MIR SINE MIR 0 262 1 329 333 15 0 chrX 101370961 101371091 -61228839 - MIR3 SINE MIR -3 205 73 433 268 45 0 chrX 101371405 101371517 -61228413 - L2 LINE L2 0 3313 3197 606 241 94 69 chrX 101371684 101371830 -61228100 + MIR SINE MIR 12 168 -94 2212 113 3 7 chrX 101371830 101372131 -61227799 + AluSg SINE Alu 2 301 -9 606 241 94 69 chrX 101372131 101372229 -61227701 + MIR SINE MIR 168 262 0 663 283 87 21 chrX 101373403 101373689 -61226241 - L2 LINE L2 -1 3271 2967 517 289 45 0 chrX 101373816 101373972 -61225958 - L2 LINE L2 -548 2766 2604 2139 125 6 10 chrX 101374015 101374327 -61225603 - AluSx SINE Alu -1 311 1 348 158 0 0 chrX 101374640 101374697 -61225233 - MER20 DNA MER1_type 0 219 163 450 161 0 0 chrX 101374697 101374790 -61225140 + (TG)n Simple_repeat Simple_repeat 2 94 0 824 187 7 26 chrX 101374808 101374963 -61224967 - MER20 DNA MER1_type -67 152 1 225 255 133 31 chrX 101375550 101375648 -61224282 + MIR SINE MIR 30 137 -71 257 283 0 22 chrX 101375759 101375851 -61224079 + GA-rich Low_complexity Low_complexity 1 90 0 2478 75 3 0 chrX 101376384 101376690 -61223240 + AluSp SINE Alu 5 311 -2 2088 86 52 0 chrX 101376942 101377237 -61222693 + AluSg SINE Alu 2 310 0 2678 42 0 0 chrX 101378257 101378567 -61221363 - AluY SINE Alu -1 310 1 236 53 26 0 chrX 101379964 101380002 -61219928 + (CA)n Simple_repeat Simple_repeat 1 39 0 2458 94 0 0 chrX 101380661 101380970 -61218960 - AluSg SINE Alu 0 310 2 499 240 0 0 chrX 101381161 101381261 -61218669 - MER81 DNA DNA -1 113 14 396 71 0 0 chrX 101381520 101381576 -61218354 + (TC)n Simple_repeat Simple_repeat 1 56 0 303 214 0 0 chrX 101384144 101384214 -61215716 + CT-rich Low_complexity Low_complexity 1 70 0 244 280 75 56 chrX 101385953 101385990 -61213940 + L2 LINE L2 3158 3193 -79 873 138 0 0 chrX 101385990 101386120 -61213810 - FLAM_C SINE Alu -2 131 2 244 280 75 56 chrX 101386120 101386189 -61213741 + L2 LINE L2 3193 3266 -6 185 154 26 0 chrX 101386301 101386340 -61213590 + (CA)n Simple_repeat Simple_repeat 1 40 0 1070 224 50 8 chrX 101386428 101386687 -61213243 + MER50 LTR ERV1 335 604 -130 424 281 23 16 chrX 101387359 101387487 -61212443 + MIR SINE MIR 6 134 -128 626 193 0 179 chrX 101387526 101387651 -61212279 + MIR SINE MIR 78 224 -38 2163 140 0 7 chrX 101387651 101387958 -61211972 + AluJo SINE Alu 3 307 -5 626 193 0 179 chrX 101387958 101387993 -61211937 + MIR SINE MIR 224 192 -70 2402 46 3 3 chrX 101387993 101388309 -61211621 - AluY SINE Alu 0 316 1 626 193 0 179 chrX 101388309 101388369 -61211561 + MIR SINE MIR 191 260 -2 225 269 0 0 chrX 101388589 101388656 -61211274 + GA-rich Low_complexity Low_complexity 1 67 0 2351 106 7 0 chrX 101388790 101389093 -61210837 - AluSx SINE Alu -7 305 1 2354 66 0 60 chrX 101389236 101389554 -61210376 - AluY SINE Alu -12 299 1 2443 71 10 10 chrX 101389885 101390196 -61209734 + AluSq SINE Alu 1 311 -2 360 293 134 55 chrX 101390264 101390829 -61209101 + L2 LINE L2 2440 3055 -217 264 238 69 20 chrX 101391211 101391312 -61208618 - MIR SINE MIR -72 190 85 2622 62 0 0 chrX 101392099 101392405 -61207525 + AluY SINE Alu 1 306 -5 257 286 12 12 chrX 101392408 101392492 -61207438 - MIR3 SINE MIR -6 202 119 445 304 37 42 chrX 101394467 101394658 -61205272 - L2 LINE L2 -4 3268 3079 241 333 31 0 chrX 101394696 101394792 -61205138 - L2 LINE L2 -569 2745 2647 301 328 8 32 chrX 101394845 101394970 -61204960 - L2 LINE L2 -181 3091 2970 219 230 58 46 chrX 101395265 101395352 -61204578 + L2 LINE L2 3185 3272 0 423 0 0 0 chrX 101396167 101396214 -61203716 + (TG)n Simple_repeat Simple_repeat 1 47 0 2327 96 6 3 chrX 101396320 101396632 -61203298 + AluSq SINE Alu 1 313 0 306 155 93 72 chrX 101397212 101397309 -61202621 - L1MC5 LINE L1 -26 7935 7837 257 329 133 14 chrX 101398237 101398380 -61201550 + MER91A DNA MER1_type 1 160 -36 258 196 0 0 chrX 101398434 101398480 -61201450 + MER91A DNA MER1_type 151 196 0 232 233 82 14 chrX 101398998 101399071 -61200859 + MIR SINE MIR 37 114 -94 290 357 55 5 chrX 101399139 101399210 -61200720 - MIR SINE MIR -11 251 185 1144 178 46 0 chrX 101399210 101399407 -61200523 + MER3 DNA MER1_type 1 206 -3 290 357 55 5 chrX 101399407 101399534 -61200396 - MIR SINE MIR -77 185 43 272 337 134 0 chrX 101399576 101399748 -61200182 + MIR SINE MIR 58 252 -10 2072 68 9 110 chrX 101399798 101400124 -61199806 + AluSx SINE Alu 1 293 -19 250 289 62 0 chrX 101400443 101400540 -61199390 + MIR SINE MIR 52 154 -108 957 228 0 21 chrX 101400652 101400845 -61199085 - MER5A DNA MER1_type 0 189 1 194 352 29 9 chrX 101401015 101401120 -61198810 - MIR SINE MIR -72 136 30 213 121 0 0 chrX 101402653 101402686 -61197244 + (A)n Simple_repeat Simple_repeat 1 33 0 410 241 89 0 chrX 101403232 101403344 -61196586 + MIR SINE MIR 48 169 -93 23 0 0 0 chrX 101403448 101403471 -61196459 + AT_rich Low_complexity Low_complexity 1 23 0 1011 216 26 84 chrX 101403687 101404117 -61195813 + L1MC5 LINE L1 7527 7931 -30 524 226 24 30 chrX 101404154 101404322 -61195608 + L1MC5 LINE L1 7783 7949 -12 815 203 146 14 chrX 101404886 101405098 -61194832 + MIR SINE MIR 2 241 -21 23 0 0 0 chrX 101405205 101405228 -61194702 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chrX 101406137 101406165 -61193765 + AT_rich Low_complexity Low_complexity 1 28 0 2161 68 75 0 chrX 101406414 101406692 -61193238 + AluSg1 SINE Alu 2 300 -9 24 53 0 0 chrX 101407060 101407098 -61192832 + AT_rich Low_complexity Low_complexity 1 38 0 737 270 134 27 chrX 101407248 101407689 -61192241 + L1ME4a LINE L1 5477 5964 -157 351 282 138 69 chrX 101408032 101408497 -61191433 + L1ME4a LINE L1 5481 5977 -144 586 128 35 0 chrX 101408891 101408977 -61190953 + Tigger4(Zombi) DNA MER2_type 32 120 -2611 * 1185 94 99 5 chrX 101408976 101409167 -61190763 + Tigger4(Zombi) DNA MER2_type 2523 2731 0 2166 112 13 7 chrX 101409563 101409866 -61190064 - AluSx SINE Alu -7 305 1 297 75 0 0 chrX 101409869 101409909 -61190021 + (T)n Simple_repeat Simple_repeat 1 40 0 2017 97 13 68 chrX 101410237 101410546 -61189384 - AluSg SINE Alu -18 292 1 408 297 57 42 chrX 101410558 101410795 -61189135 - L1MC4a LINE L1 -201 5920 5679 359 229 76 34 chrX 101410849 101410967 -61188963 - MIR SINE MIR -77 185 63 285 343 98 29 chrX 101411333 101411648 -61188282 + L2 LINE L2 1939 2275 -1039 1783 122 103 43 chrX 101414517 101414885 -61185045 - MLT1B LTR MaLR 0 390 1 347 284 89 74 chrX 101414886 101415224 -61184706 - LTR33 LTR ERVL -156 365 23 201 259 0 19 chrX 101416421 101416475 -61183455 + L2 LINE L2 3215 3267 -5 1758 160 42 7 chrX 101417304 101417592 -61182338 + AluJo SINE Alu 1 298 -14 1449 162 19 38 chrX 101417709 101417975 -61181955 - AluJo SINE Alu -12 300 40 192 113 0 57 chrX 101418707 101418760 -61181170 + (TTTC)n Simple_repeat Simple_repeat 4 53 0 241 232 21 0 chrX 101418904 101418999 -61180931 + (TA)n Simple_repeat Simple_repeat 1 97 0 715 197 8 0 chrX 101419102 101419234 -61180696 + FLAM_A SINE Alu 1 133 0 2206 117 7 0 chrX 101419238 101419536 -61180394 + AluSx SINE Alu 1 300 -12 2018 171 52 13 chrX 101419577 101419958 -61179972 - MSTD LTR MaLR 0 396 1 390 279 46 25 chrX 101420072 101420312 -61179618 + L1M4 LINE L1 2112 2356 -3790 2334 68 26 26 chrX 101420867 101421177 -61178753 + AluY SINE Alu 1 310 -1 418 299 26 87 chrX 101421804 101422068 -61177862 + MIR SINE MIR 9 256 -6 252 0 0 0 chrX 101422508 101422536 -61177394 + (CAA)n Simple_repeat Simple_repeat 3 30 0 668 200 219 19 chrX 101422538 101422753 -61177177 - MIR SINE MIR -3 259 2 964 303 62 3 chrX 101422828 101423165 -61176765 - LTR16B LTR ERVL -10 454 98 585 261 57 64 chrX 101424634 101424914 -61175016 + MLT1I LTR MaLR 81 358 -51 1998 187 111 57 chrX 101426499 101427146 -61172784 - MER69 DNA AcHobo 0 2526 1845 404 284 68 31 chrX 101427487 101427649 -61172281 - MER69 DNA AcHobo -2170 356 189 1124 152 166 9 chrX 101427784 101427995 -61171935 + MER66A LTR ERV1 104 347 -131 196 246 16 33 chrX 101428002 101428063 -61171867 + MER5B DNA MER1_type 90 149 -29 5210 110 24 3 chrX 101428139 101428893 -61171037 - L1PA15 LINE L1 -2 6163 5394 422 75 0 0 chrX 101428894 101428947 -61170983 + L1PA15 LINE L1 5825 5877 -288 2245 176 162 5 chrX 101428951 101429371 -61170559 + MER66B LTR ERV1 1 486 0 5441 233 101 103 chrX 101429371 101429784 -61170146 + MER66B-int LTR ERV1 1 413 -6263 1447 152 287 15 chrX 101429784 101429966 -61169964 - MSTB LTR MaLR 0 426 295 863 109 15 0 chrX 101429966 101430103 -61169827 + (GAAA)n Simple_repeat Simple_repeat 4 142 0 1447 152 287 15 chrX 101430103 101430255 -61169675 - MSTB LTR MaLR -131 295 1 5441 233 101 103 chrX 101430255 101432402 -61167528 + MER66B-int LTR ERV1 413 2558 -4118 2058 153 0 0 chrX 101432402 101432703 -61167227 - AluSx SINE Alu -11 301 1 5441 233 101 103 chrX 101432703 101433131 -61166799 + MER66B-int LTR ERV1 2558 2985 -3691 449 193 44 88 chrX 101433148 101433262 -61166668 + MER4D LTR ERV1 52 160 -712 13990 121 17 25 chrX 101433265 101433380 -61166550 + MER66B-int LTR ERV1 4560 4674 -2002 2854 139 9 19 chrX 101433380 101433611 -61166319 - MSTA LTR MaLR 0 428 201 2317 96 3 0 chrX 101433611 101433904 -61166026 - AluSg SINE Alu -16 294 1 2854 139 9 19 chrX 101433904 101434102 -61165828 - MSTA LTR MaLR -227 201 3 13990 121 17 25 chrX 101434102 101434237 -61165693 + MER66B-int LTR ERV1 4674 4809 -1867 2387 127 36 28 chrX 101434237 101434598 -61165332 + THE1B LTR MaLR 1 364 0 13990 121 17 25 chrX 101434598 101436480 -61163450 + MER66B-int LTR ERV1 4809 6676 0 3203 159 0 22 chrX 101436480 101436977 -61162953 + MER66B LTR ERV1 1 486 0 365 150 0 0 chrX 101436977 101437037 -61162893 - L1P LINE L1 -786 5379 5320 2284 87 10 0 chrX 101437050 101437338 -61162592 + AluY SINE Alu 1 291 -20 1053 164 99 0 chrX 101437342 101437357 -61162573 - L1MA2 LINE L1 -12 7711 7699 510 17 0 0 chrX 101437357 101437416 -61162514 + (TA)n Simple_repeat Simple_repeat 2 60 0 1053 164 99 0 chrX 101437416 101437601 -61162329 - L1MA2 LINE L1 -24 7699 7491 28 0 0 0 chrX 101438703 101438731 -61161199 + AT_rich Low_complexity Low_complexity 1 28 0 5565 102 12 19 chrX 101439376 101440270 -61159660 - L1MA2 LINE L1 -238 7485 6600 1891 106 6 77 chrX 101440284 101440623 -61159307 + MER66-int LTR ERV1 6362 6676 0 20305 158 35 17 chrX 101440633 101444177 -61155753 - L1MA2 LINE L1 -956 6609 2933 1760 196 10 0 chrX 101444177 101444483 -61155447 - AluJo SINE Alu -3 309 1 20305 158 35 17 chrX 101444483 101447122 -61152808 - L1MA2 LINE L1 -4632 2933 343 730 184 24 18 chrX 101447123 101447291 -61152639 + LTR23 LTR ERV1 269 437 0 2167 203 39 72 chrX 101447353 101448020 -61151910 - MLT1E3 LTR MaLR -3 621 1 402 221 0 13 chrX 101448032 101448109 -61151821 - MER69 DNA AcHobo -1150 76 1 1759 158 48 24 chrX 101448619 101448910 -61151020 + AluJb SINE Alu 1 298 -14 2018 152 0 0 chrX 101449798 101450101 -61149829 - AluJb SINE Alu -9 303 1 312 328 103 0 chrX 101450231 101450379 -61149551 - MIR3 SINE MIR -63 145 15 288 0 0 0 chrX 101451061 101451093 -61148837 + (CA)n Simple_repeat Simple_repeat 2 33 0 194 237 0 0 chrX 101451360 101451398 -61148532 + L3 LINE CR1 1540 1577 0 313 370 162 40 chrX 101451662 101451965 -61147965 - L2 LINE L2 -9 3263 2924 518 274 135 21 chrX 101452033 101452367 -61147563 + L1MC4a LINE L1 5568 5931 -239 259 198 25 16 chrX 101452384 101452505 -61147425 + (TA)n Simple_repeat Simple_repeat 1 122 0 230 143 0 0 chrX 101452506 101452548 -61147382 - LTR66 LTR ERVL -171 439 398 * 243 133 0 0 chrX 101452513 101452558 -61147372 + LTR66 LTR ERVL 395 439 -171 566 266 85 17 chrX 101452934 101453111 -61146819 + MIR SINE MIR 3 191 -71 2110 103 29 29 chrX 101453386 101453697 -61146233 + AluY SINE Alu 1 311 0 201 237 40 0 chrX 101453714 101453790 -61146140 + (TA)n Simple_repeat Simple_repeat 1 79 0 188 200 20 40 chrX 101454439 101454489 -61145441 - L2 LINE L2 0 3272 3224 324 244 37 0 chrX 101454496 101454578 -61145352 + L2 LINE L2 2233 2317 -997 1637 189 79 69 chrX 101455087 101455138 -61144792 - MSTD LTR MaLR 0 396 347 2017 135 13 10 chrX 101455138 101455442 -61144488 - AluJo SINE Alu -7 305 1 1637 189 79 69 chrX 101455442 101455782 -61144148 - MSTD LTR MaLR -49 347 1 28 0 0 0 chrX 101457232 101457260 -61142670 + AT_rich Low_complexity Low_complexity 1 28 0 2255 71 10 14 chrX 101457941 101458237 -61141693 - AluY SINE Alu -16 295 1 372 279 71 26 chrX 101458928 101459154 -61140776 - L1ME4a LINE L1 -36 6085 5850 260 179 60 15 chrX 101461528 101461595 -61138335 + L1MCa LINE L1 1995 2064 -4362 249 247 14 14 chrX 101461539 101461612 -61138318 - L1MCa LINE L1 -4362 2064 1992 * 496 254 20 117 chrX 101462404 101462601 -61137329 - L3 LINE CR1 -113 1464 1287 730 251 9 52 chrX 101462635 101462866 -61137064 + MIR SINE MIR 41 261 -1 205 308 64 0 chrX 101462923 101463001 -61136929 - MIR SINE MIR -2 260 178 * 608 316 181 25 chrX 101462971 101463456 -61136474 - L3 LINE CR1 -295 1282 722 236 247 31 52 chrX 101464079 101464176 -61135754 - MIR SINE MIR -118 144 50 1368 172 47 35 chrX 101464179 101464435 -61135495 + AluJb SINE Alu 1 259 -53 214 286 0 32 chrX 101464442 101464455 -61135475 - MIR SINE MIR -200 62 50 197 33 33 0 chrX 101464455 101464485 -61135445 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 214 286 0 32 chrX 101464485 101464534 -61135396 - MIR SINE MIR -212 50 2 462 36 0 0 chrX 101465020 101465076 -61134854 + (CA)n Simple_repeat Simple_repeat 2 57 0 732 176 59 13 chrX 101465635 101465788 -61134142 - MER45 DNA AcHobo 0 1581 1422 1512 182 14 10 chrX 101465788 101466084 -61133846 - L1MC3 LINE L1 -4 7781 7485 * 3691 220 68 24 chrX 101466079 101466517 -61133413 - L1M4 LINE L1 -1538 4608 4191 2404 99 0 0 chrX 101466517 101466830 -61133100 - AluSq SINE Alu 0 313 1 3691 220 68 24 chrX 101466830 101467488 -61132442 - L1M4 LINE L1 -1955 4191 3464 2467 50 0 3 chrX 101467498 101467797 -61132133 + AluY SINE Alu 1 298 -13 642 286 55 0 chrX 101467805 101467987 -61131943 - MER63A DNA MER1_type 0 210 19 577 273 12 6 chrX 101467995 101468167 -61131763 - L1M4 LINE L1 -2685 3461 3289 3749 169 49 13 chrX 101468172 101468860 -61131070 - L1MB7 LINE L1 0 6995 6283 1517 172 19 0 chrX 101468893 101469149 -61130781 + MLT1A1 LTR MaLR 105 365 0 8085 221 28 30 chrX 101469155 101470304 -61129626 - L1MB7 LINE L1 -1948 5009 3859 800 213 0 0 chrX 101470304 101470431 -61129499 - FLAM_A SINE Alu -6 127 1 8085 221 28 30 chrX 101470431 101471003 -61128927 - L1MB7 LINE L1 -3098 3859 3287 2302 125 0 0 chrX 101471003 101471315 -61128615 - AluSq SINE Alu -1 312 1 8085 221 28 30 chrX 101471315 101472074 -61127856 - L1MB7 LINE L1 -3670 3287 2565 2290 241 23 3 chrX 101472180 101473069 -61126861 - L1MB7 LINE L1 -5030 1825 814 2188 253 37 33 chrX 101473090 101473327 -61126603 - MER21B LTR ERV1 -60 803 568 1391 171 84 105 chrX 101473327 101473802 -61126128 - MER4C LTR ERV1 0 465 1 2188 253 37 33 chrX 101473802 101474382 -61125548 - MER21B LTR ERV1 -295 568 16 625 242 6 37 chrX 101474409 101474570 -61125360 - L1MB7 LINE L1 -6041 818 663 263 186 17 0 chrX 101474563 101474622 -61125308 - L1MEc LINE L1 -4331 2065 2006 * 871 219 41 58 chrX 101474622 101474864 -61125066 + MER8 DNA MER2_type 2 239 0 2101 152 56 30 chrX 101474939 101475456 -61124474 - MLT2A2 LTR ERVL -1 553 1 4118 186 45 5 chrX 101475533 101477371 -61122559 - L1MB8 LINE L1 -3 6175 4258 276 127 0 0 chrX 101477377 101477432 -61122498 - L1MA7 LINE L1 -2 6289 6235 766 282 11 37 chrX 101477439 101477712 -61122218 - ERVL LTR ERVL -1445 4319 4054 487 141 61 0 chrX 101477890 101477989 -61121941 - L1M4 LINE L1 -1612 4534 4430 312 320 80 10 chrX 101478113 101478213 -61121717 - MER5A DNA MER1_type -11 178 72 206 175 333 0 chrX 101478355 101478418 -61121512 - MIR SINE MIR -94 114 31 302 268 47 63 chrX 101479176 101479303 -61120627 - MIR SINE MIR -18 244 120 261 246 48 107 chrX 101479725 101479912 -61120018 - L1ME4a LINE L1 -100 6021 5846 276 360 0 0 chrX 101480513 101480663 -61119267 + CT-rich Low_complexity Low_complexity 5 154 0 24 0 0 0 chrX 101481830 101481854 -61118076 + GC_rich Low_complexity Low_complexity 1 24 0 344 230 122 34 chrX 101482254 101482402 -61117528 + L2 LINE L2 2118 2278 -1036 588 273 125 20 chrX 101482407 101483096 -61116834 - L1ME4a LINE L1 -763 5383 4777 451 324 79 50 chrX 101483220 101483600 -61116330 + L2 LINE L2 2272 2662 -652 480 296 96 6 chrX 101484386 101484583 -61115347 + MIR SINE MIR 32 249 -13 195 222 0 0 chrX 101484551 101484587 -61115343 + L2 LINE L2 3263 3298 -15 * 2536 64 0 0 chrX 101484638 101484934 -61114996 + AluY SINE Alu 1 296 -15 240 157 191 90 chrX 101485149 101485238 -61114692 + MIR3 SINE MIR 10 107 -101 347 291 45 15 chrX 101485482 101485616 -61114314 - MIR SINE MIR -78 184 47 273 314 58 0 chrX 101486201 101486287 -61113643 + L2 LINE L2 2569 2659 -655 243 88 0 0 chrX 101486749 101486783 -61113147 + (TG)n Simple_repeat Simple_repeat 1 34 0 240 311 87 87 chrX 101487022 101487205 -61112725 + L2 LINE L2 3027 3209 -63 570 67 0 0 chrX 101487251 101487326 -61112604 + (TG)n Simple_repeat Simple_repeat 2 76 0 347 376 57 48 chrX 101487710 101487810 -61112120 + L1ME3A LINE L1 487 585 -5534 2439 99 0 6 chrX 101487810 101488122 -61111808 - AluSg SINE Alu 0 310 1 347 376 57 48 chrX 101488122 101488353 -61111577 + L1ME3A LINE L1 585 821 -5298 191 36 36 0 chrX 101488402 101488430 -61111500 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1605 260 122 67 chrX 101488450 101489849 -61110081 + L1ME3A LINE L1 3479 4954 -1175 1030 192 67 97 chrX 101489856 101490216 -61109714 + MLT2D LTR ERVL 1 349 -65 279 0 0 0 chrX 101490220 101490251 -61109679 + (TC)n Simple_repeat Simple_repeat 2 32 0 272 155 19 107 chrX 101490279 101490382 -61109548 + L1MC4 LINE L1 6652 6745 -1297 959 260 162 22 chrX 101490502 101491145 -61108785 + L1ME3A LINE L1 5127 5856 -295 1163 141 66 14 chrX 101491148 101491445 -61108485 - MLT1A1 LTR MaLR -11 354 9 509 186 28 164 chrX 101491453 101491807 -61108123 + L1ME3A LINE L1 5847 6152 -1 272 277 123 57 chrX 101491803 101492153 -61107777 + L1M4 LINE L1 2491 2863 -3283 * 260 303 194 37 chrX 101492273 101492439 -61107491 - MIR SINE MIR -20 188 1 3847 179 93 46 chrX 101492611 101493268 -61106662 + L1MCb LINE L1 427 1052 -5512 1900 172 3 0 chrX 101493268 101493570 -61106360 + AluJo SINE Alu 5 307 -5 3847 179 93 46 chrX 101493570 101494106 -61105824 + L1MCb LINE L1 1052 1561 -5003 3277 101 38 10 chrX 101494106 101494603 -61105327 - MER9 LTR ERVK 0 511 1 3847 179 93 46 chrX 101494603 101494759 -61105171 + L1MCb LINE L1 1561 1708 -4856 1889 157 10 3 chrX 101494759 101495064 -61104866 - AluJb SINE Alu -5 307 1 3847 179 93 46 chrX 101495064 101495334 -61104596 + L1MCb LINE L1 1708 2137 -4427 2421 73 0 17 chrX 101495443 101495745 -61104185 + AluY SINE Alu 1 297 -14 1217 108 6 0 chrX 101495745 101495911 -61104019 + AluSg/x SINE Alu 134 300 -12 2000 240 51 29 chrX 101495911 101496195 -61103735 + L1MCb LINE L1 2371 2647 -3917 2106 145 0 0 chrX 101496195 101496492 -61103438 + AluJb SINE Alu 1 297 -15 2000 240 51 29 chrX 101496492 101497178 -61102752 + L1MCb LINE L1 2647 3336 -3228 3182 72 7 0 chrX 101497178 101497597 -61102333 + L1PA7 LINE L1 5733 6154 0 745 178 17 29 chrX 101497597 101497771 -61102159 + MLT1A1 LTR MaLR 188 359 -6 1399 209 66 29 chrX 101498327 101498427 -61101503 + L1MCb LINE L1 3179 3274 -3290 2505 64 0 0 chrX 101498427 101498724 -61101206 - AluY SINE Alu -14 297 1 1399 209 66 29 chrX 101498724 101499140 -61100790 + L1MCb LINE L1 3274 3714 -2850 747 139 90 0 chrX 101499140 101499262 -61100668 + FLAM_C SINE Alu 1 133 -10 301 270 96 0 chrX 101499263 101499378 -61100552 + L1MCb LINE L1 3707 3832 -2732 603 199 209 0 chrX 101499391 101499587 -61100343 + L1MCb LINE L1 4577 4813 -1751 5727 141 128 87 chrX 101499594 101500492 -61099438 + L1MC3 LINE L1 6188 7273 -512 275 196 49 59 chrX 101500492 101500594 -61099336 + MLT1F1 LTR MaLR 25 125 -442 5727 141 128 87 chrX 101500594 101501129 -61098801 + L1MC3 LINE L1 7273 7785 0 21 0 0 0 chrX 101502051 101502072 -61097858 + AT_rich Low_complexity Low_complexity 1 21 0 270 279 22 34 chrX 101502132 101502311 -61097619 - L1ME4a LINE L1 -100 6021 5845 432 322 10 21 chrX 101502779 101502972 -61096958 + CT-rich Low_complexity Low_complexity 1 190 0 1521 207 47 19 chrX 101504714 101505161 -61094769 + MER89 LTR ERV1 1 559 0 888 155 19 7 chrX 101505188 101505343 -61094587 - Tigger3(Golem) DNA MER2_type -2 3027 2871 301 253 73 73 chrX 101505431 101505542 -61094388 + L1ME LINE L1 5491 5604 -517 2348 89 0 0 chrX 101505542 101505835 -61094095 + AluSx SINE Alu 1 293 -19 301 253 73 73 chrX 101505835 101505873 -61094057 + L1ME LINE L1 5603 5640 -481 13093 140 22 11 chrX 101505893 101508990 -61090940 - L1PA11 LINE L1 -1 6173 3028 1626 155 0 16 chrX 101509047 101509305 -61090625 + AluJb SINE Alu 35 288 -24 4581 198 41 9 chrX 101509996 101511959 -61087971 + L1MB8 LINE L1 4148 6177 -1 250 220 10 30 chrX 101512076 101512176 -61087754 - L1ME4a LINE L1 -449 5672 5575 438 243 77 30 chrX 101512264 101512539 -61087391 - L1ME4a LINE L1 -151 5970 5681 809 274 52 75 chrX 101512608 101512987 -61086943 + MLT1H1 LTR MaLR 31 388 -154 2118 113 7 0 chrX 101513006 101513288 -61086642 - AluSx SINE Alu -28 284 1 275 239 372 0 chrX 101513289 101513402 -61086528 + MLT1H1 LTR MaLR 400 554 -13 377 150 0 0 chrX 101513468 101513528 -61086402 + MER58 DNA MER1_type 2361 2420 0 2055 130 13 0 chrX 101513675 101513975 -61085955 - AluSx SINE Alu -8 304 1 196 167 106 61 chrX 101514114 101514180 -61085750 + MIR SINE MIR 88 156 -106 878 242 112 12 chrX 101514182 101514538 -61085392 + L1ME3A LINE L1 5478 5868 -302 203 318 61 38 chrX 101514900 101515032 -61084898 + MIR3 SINE MIR 10 144 -64 333 0 0 0 chrX 101515737 101515774 -61084156 + (TG)n Simple_repeat Simple_repeat 2 38 0 1187 212 86 52 chrX 101515803 101516152 -61083778 + MLT1A1 LTR MaLR 1 361 -4 821 226 63 24 chrX 101519444 101519776 -61080154 + Charlie1b DNA MER1_type 94 438 -85 551 227 68 6 chrX 101519867 101520043 -61079887 - LTR37A LTR ERV1 -239 187 1 401 286 26 7 chrX 101520071 101520225 -61079705 - MER31-int LTR ERV1 -712 4224 4068 5520 172 30 6 chrX 101520246 101522359 -61077571 - L1MB3 LINE L1 -19 6164 3999 1646 230 84 62 chrX 101522388 101523092 -61076838 - MER31-int LTR ERV1 -881 4055 3337 1747 142 13 41 chrX 101523123 101523261 -61076669 + AluJo SINE Alu 1 141 -171 207 69 0 0 chrX 101523261 101523290 -61076640 + (CAA)n Simple_repeat Simple_repeat 1 29 0 1747 142 13 41 chrX 101523290 101523469 -61076461 + AluJo SINE Alu 141 309 -3 1075 272 23 10 chrX 101523534 101523835 -61076095 + REP3 LTR ERV 4 308 -254 596 177 7 30 chrX 101523835 101523996 -61075934 - L1MA6 LINE L1 -123 6177 6014 541 165 0 0 chrX 101523996 101524078 -61075852 + L1MA6 LINE L1 6198 6300 0 329 287 23 0 chrX 101524089 101524176 -61075754 + REP3 LTR ERV 292 380 -182 283 213 0 0 chrX 101524216 101524277 -61075653 + REP3 LTR ERV 455 515 -47 322 259 35 17 chrX 101524331 101524447 -61075483 - MER31-int LTR ERV1 -1648 3288 3171 459 254 53 29 chrX 101524890 101525099 -61074831 - L1ME3A LINE L1 -289 5881 5668 230 206 55 14 chrX 101525072 101525145 -61074785 - L1ME3A LINE L1 -218 5952 5877 * 2234 122 14 6 chrX 101525165 101525525 -61074405 - L1MA2 LINE L1 0 6304 5942 1023 190 133 30 chrX 101525539 101525908 -61074022 + L1MC5 LINE L1 7511 7917 -44 339 308 23 23 chrX 101526149 101526282 -61073648 + MIR SINE MIR 15 147 -115 193 239 131 69 chrX 101526675 101526805 -61073125 + MIR3 SINE MIR 9 146 -62 192 235 0 0 chrX 101526846 101526880 -61073050 - L2 LINE L2 -23 3249 3216 493 277 77 31 chrX 101526955 101527299 -61072631 - L2 LINE L2 -186 3086 2731 336 98 78 0 chrX 101527693 101527904 -61072026 + (TA)n Simple_repeat Simple_repeat 1 227 0 1628 148 47 14 chrX 101527904 101528181 -61071749 - AluJo SINE Alu -26 286 1 725 265 14 9 chrX 101528808 101529031 -61070899 - L1ME1 LINE L1 -3 6163 5940 2241 207 58 47 chrX 101529047 101530170 -61069760 - L1MDa LINE L1 -3187 3353 2211 22 35 0 0 chrX 101530196 101530225 -61069705 + AT_rich Low_complexity Low_complexity 1 29 0 33 0 0 0 chrX 101530676 101530709 -61069221 + AT_rich Low_complexity Low_complexity 1 33 0 192 152 0 0 chrX 101530893 101530926 -61069004 + (CAT)n Simple_repeat Simple_repeat 3 35 0 897 200 16 76 chrX 101531032 101531282 -61068648 - MER106A DNA MER1_type -1 235 1 368 116 0 58 chrX 101532362 101532431 -61067499 + MER53 DNA DNA 1 65 -124 317 120 380 0 chrX 101532391 101532491 -61067439 - MER53 DNA DNA -15 174 37 * 308 259 185 35 chrX 101532522 101532781 -61067149 + MLT1G1 LTR MaLR 289 586 -9 1779 52 4 0 chrX 101533669 101533901 -61066029 - L1MA4A LINE L1 -12 6291 6059 316 173 0 0 chrX 101534108 101534160 -61065770 + Tigger5 DNA MER2_type 4 55 -2268 489 176 0 11 chrX 101534167 101534258 -61065672 + Tigger5 DNA MER2_type 2234 2323 0 270 221 78 0 chrX 101535102 101535179 -61064751 + MIR SINE MIR 109 191 -71 208 161 0 0 chrX 101535380 101535411 -61064519 + L2 LINE L2 3207 3237 -35 22 0 0 0 chrX 101535988 101536010 -61063920 + AT_rich Low_complexity Low_complexity 1 22 0 510 263 6 25 chrX 101536418 101536467 -61063463 - L1MA10 LINE L1 -3 6331 6283 463 239 14 114 chrX 101536467 101536747 -61063183 - L1ME1 LINE L1 -44 6122 5871 1746 213 70 58 chrX 101536754 101537337 -61062593 - LTR34 LTR ERV1 -6 693 104 345 216 17 8 chrX 101537361 101537467 -61062463 - LTR24B LTR ERV1 -507 69 1 2334 233 33 15 chrX 101537545 101538276 -61061654 - L1ME1 LINE L1 -1034 5112 4369 1366 197 0 45 chrX 101538280 101538549 -61061381 - AluJo SINE Alu -55 257 1 1401 198 42 114 chrX 101538698 101539198 -61060732 - MLT2C2 LTR ERVL 0 464 1 209 204 0 0 chrX 101539454 101539498 -61060432 + (TATG)n Simple_repeat Simple_repeat 2 45 0 727 250 110 13 chrX 101539713 101539832 -61060098 - L1MC4 LINE L1 -820 7222 7116 2435 92 0 0 chrX 101539832 101540138 -61059792 - AluSq SINE Alu -7 306 1 727 250 110 13 chrX 101540138 101540318 -61059612 - L1MC4 LINE L1 -926 7116 6894 193 345 9 26 chrX 101540334 101540450 -61059480 + MIR SINE MIR 145 258 -4 2038 130 0 59 chrX 101540505 101540829 -61059101 + AluSx SINE Alu 7 311 -1 29 28 0 0 chrX 101540888 101540924 -61059006 + AT_rich Low_complexity Low_complexity 1 36 0 7471 197 35 40 chrX 101540928 101543757 -61056173 - L1MA9 LINE L1 -31 6345 3504 288 0 0 0 chrX 101543757 101543789 -61056141 + (TA)n Simple_repeat Simple_repeat 2 33 0 2006 139 3 19 chrX 101543789 101544099 -61055831 - AluSx SINE Alu -7 305 1 7471 197 35 40 chrX 101544099 101544740 -61055190 - L1MA9 LINE L1 -2870 3506 2736 367 321 29 22 chrX 101545438 101545575 -61054355 - L1MA9 LINE L1 -5991 150 13 2728 141 46 2 chrX 101545803 101546236 -61053694 - LTR47A LTR ERVL 0 452 1 2305 167 52 7 chrX 101546919 101547327 -61052603 - MSTB LTR MaLR 0 426 1 21 36 0 0 chrX 101547644 101547672 -61052258 + AT_rich Low_complexity Low_complexity 1 28 0 334 311 97 35 chrX 101547699 101547784 -61052146 - L1ME4a LINE L1 -45 6076 5998 1383 198 114 14 chrX 101547784 101548142 -61051788 + MSTD LTR MaLR 1 394 -2 334 311 97 35 chrX 101548142 101548284 -61051646 - L1ME4a LINE L1 -123 5998 5835 378 0 0 0 chrX 101548337 101548379 -61051551 + (TAA)n Simple_repeat Simple_repeat 3 44 0 576 301 114 0 chrX 101548380 101548599 -61051331 - MIR SINE MIR -8 254 11 212 250 0 0 chrX 101549039 101549091 -61050839 + (TATG)n Simple_repeat Simple_repeat 4 55 0 1589 226 44 22 chrX 101549142 101549594 -61050336 + MLT1C LTR MaLR 6 467 0 601 283 31 26 chrX 101549750 101549941 -61049989 - MIR SINE MIR -44 218 27 198 361 53 6 chrX 101550050 101550219 -61049711 - L2 LINE L2 -1388 1926 1750 200 337 35 0 chrX 101551054 101551140 -61048790 - MIR SINE MIR -70 192 104 819 164 0 8 chrX 101551522 101551656 -61048274 - FLAM_C SINE Alu -10 133 1 222 128 0 0 chrX 101552237 101552276 -61047654 + (TG)n Simple_repeat Simple_repeat 2 40 0 304 291 147 0 chrX 101553663 101553803 -61046127 - MIR SINE MIR -55 207 50 834 155 0 0 chrX 101554146 101554275 -61045655 - FLAM_C SINE Alu -4 139 11 236 346 20 0 chrX 101557302 101557455 -61042475 - L1ME4a LINE L1 -426 5695 5540 2039 217 58 15 chrX 101557788 101558377 -61041553 - L1MB7 LINE L1 0 6184 5571 860 181 151 9 chrX 101558373 101558605 -61041325 - L1MD3 LINE L1 -323 7672 7408 * 2014 168 41 59 chrX 101559758 101560198 -61039732 - MSTB1 LTR MaLR 0 432 1 1859 123 47 65 chrX 101561360 101561742 -61038188 + THE1C LTR MaLR 1 375 0 296 157 0 0 chrX 101562443 101562494 -61037436 + MER53 DNA DNA 2 52 -137 1593 228 20 35 chrX 101562512 101562543 -61037387 - MLT2D LTR ERVL -17 397 367 270 0 0 0 chrX 101562543 101562573 -61037357 + (CA)n Simple_repeat Simple_repeat 2 31 0 1593 228 20 35 chrX 101562573 101562944 -61036986 - MLT2D LTR ERVL -47 367 1 394 200 0 0 chrX 101562944 101563020 -61036910 + MER53 DNA DNA 114 189 0 322 217 132 13 chrX 101563042 101563257 -61036673 + MLT1G1 LTR MaLR 270 489 -53 495 0 0 0 chrX 101564803 101564858 -61035072 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 272 176 73 0 chrX 101565269 101565337 -61034593 + MIR SINE MIR 109 181 -81 3301 227 35 28 chrX 101566445 101567751 -61032179 - L1ME1 LINE L1 -172 5992 4681 1821 160 166 8 chrX 101567751 101568119 -61031811 + MSTA LTR MaLR 1 426 -2 3301 227 35 28 chrX 101568119 101568431 -61031499 - L1ME1 LINE L1 -1483 4681 4373 1270 232 15 11 chrX 101568737 101569000 -61030930 - AluJo SINE Alu -47 265 2 778 216 63 8 chrX 101569554 101569808 -61030122 - L1ME3A LINE L1 -251 5919 5652 1040 45 0 8 chrX 101570443 101570577 -61029353 + L1PA7 LINE L1 6016 6148 -6 290 200 106 0 chrX 101570583 101570668 -61029262 - L1MC5 LINE L1 -610 7351 7258 1155 217 62 95 chrX 101570803 101571411 -61028519 - L1MC5 LINE L1 -736 7225 6638 894 204 36 5 chrX 101571621 101571817 -61028113 + MER3 DNA MER1_type 8 209 0 835 259 31 10 chrX 101571817 101572106 -61027824 - L1MC5 LINE L1 -1901 5907 5613 211 296 93 28 chrX 101572314 101572422 -61027508 + MIR3 SINE MIR 8 122 -86 203 350 17 33 chrX 101572444 101572564 -61027366 + MIR SINE MIR 2 119 -143 402 117 0 52 chrX 101573181 101573258 -61026672 - Tigger5 DNA MER2_type -9 2314 2242 * 1366 223 33 13 chrX 101573243 101573544 -61026386 - Tigger5 DNA MER2_type -2016 307 1 223 250 190 0 chrX 101574151 101574267 -61025663 + MIR SINE MIR 114 251 -11 1930 169 0 3 chrX 101575119 101575420 -61024510 + AluJb SINE Alu 1 300 -12 228 35 0 0 chrX 101575845 101575874 -61024056 + (TG)n Simple_repeat Simple_repeat 2 30 0 867 145 0 0 chrX 101575897 101576021 -61023909 - FAM SINE Alu -36 149 26 429 333 127 0 chrX 101577177 101577405 -61022525 - MIR SINE MIR -3 259 3 501 94 24 0 chrX 101577482 101577567 -61022363 - MLT1C LTR MaLR 0 505 419 997 228 49 54 chrX 101577638 101577918 -61022012 - MLT1C LTR MaLR -93 374 95 3631 47 15 23 chrX 101577918 101578245 -61021685 - L1PA7 LINE L1 -3 6151 5828 2484 62 0 16 chrX 101578245 101578553 -61021377 - AluY SINE Alu -8 303 1 3631 47 15 23 chrX 101578553 101578698 -61021232 - L1PA7 LINE L1 -326 5828 5683 997 228 49 54 chrX 101578698 101578786 -61021144 - MLT1C LTR MaLR -372 95 8 559 319 16 11 chrX 101579390 101579581 -61020349 - MIR SINE MIR -44 218 27 2405 96 0 0 chrX 101579666 101579959 -61019971 + AluSg SINE Alu 1 293 -17 267 291 46 34 chrX 101580042 101580217 -61019713 - L2 LINE L2 -1417 1897 1721 704 153 12 25 chrX 101580226 101580389 -61019541 + G-rich Low_complexity Low_complexity 1 161 0 378 57 0 0 chrX 101580427 101580480 -61019450 + (GA)n Simple_repeat Simple_repeat 2 54 0 233 323 134 0 chrX 101581310 101581437 -61018493 - MIR SINE MIR -70 192 49 2566 52 6 9 chrX 101582534 101582862 -61017068 + L1PA8A LINE L1 5805 6131 0 1006 144 5 53 chrX 101583445 101583632 -61016298 + L1PB3 LINE L1 5969 6146 -8 349 270 13 25 chrX 101583659 101583818 -61016112 + L1ME3 LINE L1 4748 4904 -1242 427 328 83 13 chrX 101583843 101584072 -61015858 + L1ME3 LINE L1 4977 5221 -925 1256 267 117 28 chrX 101584114 101584796 -61015134 + L1ME3 LINE L1 5313 6055 -107 22 35 0 0 chrX 101584890 101584919 -61015011 + AT_rich Low_complexity Low_complexity 1 29 0 2063 109 0 0 chrX 101584948 101585223 -61014707 + AluSx SINE Alu 1 275 -37 216 0 0 0 chrX 101585229 101585253 -61014677 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2370 109 17 0 chrX 101585430 101585777 -61014153 - L1PA16 LINE L1 -9 6157 5805 226 353 134 0 chrX 101586912 101587031 -61012899 - MIR SINE MIR -70 192 58 351 267 62 25 chrX 101587973 101588134 -61011796 - L1MC/D LINE L1 -2329 5479 5313 275 329 53 7 chrX 101588501 101588653 -61011277 + MIR SINE MIR 97 255 -7 262 356 7 27 chrX 101591108 101591257 -61008673 - MIR SINE MIR -67 195 50 257 329 7 50 chrX 101591593 101591733 -61008197 - L1ME LINE L1 -520 5601 5468 450 53 0 0 chrX 101592374 101592431 -61007499 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 384 242 102 0 chrX 101592900 101593057 -61006873 - LTR37A LTR ERV1 -249 177 5 295 248 39 16 chrX 101593432 101593561 -61006369 + L1MC3 LINE L1 6981 7112 -673 249 214 12 71 chrX 101593562 101593646 -61006284 + MLT1F1 LTR MaLR 47 125 -442 946 180 11 0 chrX 101593652 101593835 -61006095 + L1MD3 LINE L1 7411 7595 -400 1861 188 96 7 chrX 101593867 101594324 -61005606 + L1MB8 LINE L1 5565 6062 -116 7069 117 17 3 chrX 101594333 101596481 -61003449 + L1MA2 LINE L1 4126 6304 0 308 248 39 6 chrX 101596483 101596616 -61003314 + L1MB7 LINE L1 6049 6184 0 282 320 20 0 chrX 101596981 101597134 -61002796 + L1ME LINE L1 5540 5695 -426 2305 155 74 2 chrX 101597174 101597607 -61002323 + MER101 LTR ERV1 11 474 0 225 167 0 0 chrX 101597688 101597742 -61002188 + (CA)n Simple_repeat Simple_repeat 1 54 0 372 319 123 29 chrX 101598000 101598118 -61001812 + L1ME4a LINE L1 5406 5511 -2297 1375 160 108 134 chrX 101598118 101598618 -61001312 - LTR45B LTR ERV1 0 489 3 372 319 123 29 chrX 101598618 101598881 -61001049 + L1ME4a LINE L1 5511 5823 -1985 1729 146 3 45 chrX 101598944 101599089 -61000841 + AluJb SINE Alu 1 130 -182 2404 50 7 20 chrX 101599089 101599392 -61000538 + AluY SINE Alu 1 299 -12 1729 146 3 45 chrX 101599392 101599534 -61000396 + AluJb SINE Alu 130 276 -36 1880 14 27 0 chrX 101599893 101600115 -60999815 + L1PA2 LINE L1 5925 6152 -3 323 116 75 35 chrX 101600584 101600757 -60999173 + (TA)n Simple_repeat Simple_repeat 1 180 0 394 100 75 29 chrX 101600789 101601101 -60998829 + (TA)n Simple_repeat Simple_repeat 1 326 0 25 0 0 0 chrX 101601184 101601209 -60998721 + AT_rich Low_complexity Low_complexity 1 25 0 264 30 0 0 chrX 101601475 101601508 -60998422 + (CA)n Simple_repeat Simple_repeat 2 34 0 244 188 0 0 chrX 101602024 101602072 -60997858 - L1 LINE L1 -883 5263 5216 351 256 141 0 chrX 101602723 101602863 -60997067 + MIR SINE MIR 35 192 -40 200 362 43 0 chrX 101603719 101603860 -60996070 + L2 LINE L2 1750 1896 -1418 491 328 17 11 chrX 101604015 101604189 -60995741 + MIR SINE MIR 27 201 -61 575 187 182 49 chrX 101604329 101604717 -60995213 - MLT1C LTR MaLR 0 467 1 2087 129 3 7 chrX 101604901 101605210 -60994720 - AluSq SINE Alu -5 308 1 2465 86 3 6 chrX 101605452 101605766 -60994164 + AluSq SINE Alu 1 313 0 483 292 134 9 chrX 101605868 101606084 -60993846 + MIR SINE MIR 10 252 -10 343 292 42 81 chrX 101606178 101606285 -60993645 + L1ME4a LINE L1 5870 5980 -141 6443 115 70 39 chrX 101606285 101606898 -60993032 + Tigger3b DNA MER2_type 2 594 -2434 1878 157 0 22 chrX 101606898 101607210 -60992720 + AluJb SINE Alu 1 305 -7 6443 115 70 39 chrX 101607210 101607511 -60992419 + Tigger3b DNA MER2_type 594 884 -2144 2189 132 0 0 chrX 101607511 101607821 -60992109 - AluSx SINE Alu -2 310 1 6443 115 70 39 chrX 101607821 101608097 -60991833 + Tigger3b DNA MER2_type 884 1231 0 343 292 42 81 chrX 101608097 101608249 -60991681 + L1ME4a LINE L1 5980 6119 -2 241 235 102 31 chrX 101609899 101609997 -60989933 - MIR SINE MIR -76 132 28 291 340 80 19 chrX 101610333 101610495 -60989435 - MIR SINE MIR -33 229 58 811 265 51 52 chrX 101611062 101611622 -60988308 + PABL_B LTR ERV1 97 667 0 350 279 25 19 chrX 101611682 101611907 -60988023 + L1M4 LINE L1 2206 2432 -3714 256 211 18 0 chrX 101612073 101612130 -60987800 + L1M4 LINE L1 2678 2735 -3411 396 286 146 14 chrX 101612168 101612381 -60987549 + L1M4 LINE L1 2915 3155 -2991 369 0 0 0 chrX 101612536 101612577 -60987353 + (TG)n Simple_repeat Simple_repeat 1 41 0 32 0 0 0 chrX 101613517 101613549 -60986381 + AT_rich Low_complexity Low_complexity 1 32 0 544 286 113 9 chrX 101613744 101613975 -60985955 + MIR SINE MIR 8 262 0 194 356 48 10 chrX 101614488 101614592 -60985338 - MIR SINE MIR -83 125 18 490 279 39 21 chrX 101614848 101615081 -60984849 + L1MC4a LINE L1 5671 5907 -1901 239 133 0 22 chrX 101615081 101615126 -60984804 - Charlie5 DNA MER1_type -2403 209 166 6342 219 56 46 chrX 101615126 101615446 -60984484 - MSTD-int LTR MaLR -29 1706 1391 1869 168 7 7 chrX 101615446 101615749 -60984181 - AluJb SINE Alu -9 303 1 6342 219 56 46 chrX 101615749 101616799 -60983131 - MSTD-int LTR MaLR -344 1391 313 2149 101 30 7 chrX 101616799 101617097 -60982833 - AluSq SINE Alu -6 307 3 6342 219 56 46 chrX 101617097 101617413 -60982517 - MSTD-int LTR MaLR -1422 313 2 1470 212 72 32 chrX 101617417 101617794 -60982136 - MSTD LTR MaLR -4 392 1 28 71 0 0 chrX 101618329 101618385 -60981545 + AT_rich Low_complexity Low_complexity 1 56 0 1314 234 153 11 chrX 101618521 101619023 -60980907 + MLT1F1 LTR MaLR 1 567 0 3696 88 43 20 chrX 101619362 101619898 -60980032 + LTR14 LTR ERVK 1 548 0 294 106 0 0 chrX 101620643 101620690 -60979240 + (TG)n Simple_repeat Simple_repeat 1 47 0 219 178 0 22 chrX 101621065 101621110 -60978820 - L2 LINE L2 -1052 2262 2219 552 216 147 16 chrX 101621563 101621808 -60978122 - LTR37A LTR ERV1 -149 277 1 287 264 0 25 chrX 101622178 101622299 -60977631 + L1MC3 LINE L1 6986 7103 -682 243 254 127 0 chrX 101622302 101622373 -60977557 + MLT1F1 LTR MaLR 45 124 -443 944 167 154 0 chrX 101622380 101622607 -60977323 + L1MD3 LINE L1 7412 7673 -322 * 2134 216 64 5 chrX 101622603 101623167 -60976763 + L1MB8 LINE L1 5572 6168 -10 365 288 17 0 chrX 101623522 101623640 -60976290 + L1MC/D LINE L1 5541 5660 -461 263 299 46 62 chrX 101624255 101624449 -60975481 + L1MC/D LINE L1 5629 5819 -1989 414 0 0 0 chrX 101625771 101625817 -60974113 + (CA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chrX 101625885 101625908 -60974022 + AT_rich Low_complexity Low_complexity 1 23 0 244 338 52 33 chrX 101626264 101626477 -60973453 + L2 LINE L2 1710 1926 -1388 469 283 8 0 chrX 101626582 101626702 -60973228 + MIR SINE MIR 27 147 -115 751 155 44 33 chrX 101626748 101626929 -60973001 - L1MA4 LINE L1 -3 6297 6115 615 318 123 27 chrX 101627027 101627851 -60972079 + L2 LINE L2 2403 3308 -5 359 354 17 22 chrX 101627980 101628158 -60971772 - MER5A DNA MER1_type 0 189 13 2147 117 0 17 chrX 101628752 101629051 -60970879 + AluSg SINE Alu 1 294 -16 45013 39 3 0 chrX 101629098 101635225 -60964705 + L1PA4 LINE L1 9 6155 0 209 273 78 55 chrX 101635352 101635480 -60964450 - MIR SINE MIR -6 256 126 1187 252 9 12 chrX 101635492 101635825 -60964105 + L1MC4 LINE L1 6894 7225 -817 3468 218 29 36 chrX 101636446 101637492 -60962438 + L1ME1 LINE L1 4367 5392 -774 2200 120 0 0 chrX 101637492 101637783 -60962147 + AluSg SINE Alu 1 291 -19 3468 218 29 36 chrX 101637783 101638548 -60961382 + L1ME1 LINE L1 5392 6161 -5 214 234 78 0 chrX 101639565 101639629 -60960301 - MIR SINE MIR -85 177 109 2083 96 0 4 chrX 101639936 101640207 -60959723 + AluSx SINE Alu 30 299 -13 6055 143 32 18 chrX 101640216 101640784 -60959146 + L1PB2 LINE L1 4084 4643 -1508 2144 121 7 0 chrX 101640784 101641081 -60958849 + AluSx SINE Alu 1 299 -13 6055 143 32 18 chrX 101641081 101642556 -60957374 + L1PB2 LINE L1 4643 6151 0 237 224 276 0 chrX 101644243 101644341 -60955589 - MLT1H LTR MaLR -9 540 416 237 294 11 65 chrX 101644430 101644522 -60955408 - MLT1G1 LTR MaLR -207 388 302 477 210 204 0 chrX 101644538 101644695 -60955235 - MER53 DNA DNA 0 189 1 1790 174 39 7 chrX 101646139 101646444 -60953486 - MSTD LTR MaLR 0 396 82 757 182 145 19 chrX 101646454 101646613 -60953317 - FRAM SINE Alu 0 176 1 494 188 0 40 chrX 101646613 101646646 -60953284 - MSTD LTR MaLR -331 97 64 1148 191 64 0 chrX 101646646 101646866 -60953064 + MER46A DNA MER2_type 1 234 -2 494 188 0 40 chrX 101646866 101646933 -60952997 - MSTD LTR MaLR -364 64 1 6208 214 23 85 chrX 101646942 101648224 -60951706 - MSTD-int LTR MaLR -9 1726 561 2094 128 7 0 chrX 101648224 101648522 -60951408 - AluSx SINE Alu -12 300 1 6208 214 23 85 chrX 101648522 101648844 -60951086 - MSTD-int LTR MaLR -1174 561 221 312 51 0 0 chrX 101648845 101648884 -60951046 + MER84-int LTR ERV1 4915 4953 -1 453 107 40 13 chrX 101648887 101648962 -60950968 + MER84 LTR ERVI 3 79 -428 2099 107 37 6 chrX 101648967 101649403 -60950527 + MER84 LTR ERVI 2 507 0 1003 190 66 5 chrX 101649406 101649617 -60950313 - MSTD-int LTR MaLR -1511 224 1 1345 206 98 7 chrX 101649618 101649905 -60950025 - MSTD LTR MaLR 0 396 84 5076 129 60 41 chrX 101649912 101650662 -60949268 + MER4D LTR ERV1 1 772 -131 1570 140 19 23 chrX 101650662 101650926 -60949004 + AluSx SINE Alu 42 304 -8 5076 129 60 41 chrX 101650926 101651061 -60948869 + MER4D LTR ERV1 772 903 0 3187 128 100 37 chrX 101651099 101651416 -60948514 - MER4B LTR ERV1 -2 608 312 2155 97 7 3 chrX 101651416 101651714 -60948216 - AluSg SINE Alu 0 310 12 3187 128 100 37 chrX 101651714 101651968 -60947962 - MER4B LTR ERV1 -298 312 1 272 240 0 0 chrX 101652518 101652568 -60947362 + LTR60 LTR ERV1 280 329 -257 614 274 39 53 chrX 101652665 101652873 -60947057 + LTR35 LTR ERV1 414 618 0 366 198 0 49 chrX 101652873 101652954 -60946976 - MSTD LTR MaLR -351 77 1 285 306 66 8 chrX 101653426 101653547 -60946383 - MIR SINE MIR -79 183 56 244 361 87 0 chrX 101654087 101654270 -60945660 - MIR SINE MIR -12 250 52 2965 65 128 5 chrX 101654331 101654730 -60945200 + LTR7 LTR ERV1 1 448 -2 15104 149 54 66 chrX 101654732 101658495 -60941435 + HERVH LTR ERV1 1 3747 -3966 1864 148 3 7 chrX 101658502 101658799 -60941131 + HERVH LTR ERV1 3995 4290 -3423 * 6545 116 2 1 chrX 101658797 101659725 -60940205 + HERVH LTR ERV1 4221 5149 -2564 1368 117 40 9 chrX 101659716 101659939 -60939991 + HERVH LTR ERV1 5590 5819 -1894 * 2473 90 48 13 chrX 101659939 101660316 -60939614 + HERVH LTR ERV1 7324 7713 0 2333 78 16 9 chrX 101660316 101660715 -60939215 + LTR7 LTR ERV1 1 448 -2 719 206 34 39 chrX 101660715 101660918 -60939012 + MER106A DNA MER1_type 35 236 0 35 54 0 0 chrX 101661449 101661505 -60938425 + AT_rich Low_complexity Low_complexity 1 56 0 1302 262 105 56 chrX 101661643 101662158 -60937772 + MLT1F1 LTR MaLR 3 567 0 318 300 18 32 chrX 101662404 101662557 -60937373 - MIR SINE MIR -67 141 16 273 29 0 0 chrX 101662651 101662685 -60937245 + (CATA)n Simple_repeat Simple_repeat 1 34 0 377 195 37 0 chrX 101662753 101662835 -60937095 + LTR37A LTR ERV1 93 177 -249 258 311 24 66 chrX 101662896 101663108 -60936822 - L2 LINE L2 -1398 1916 1714 240 183 56 28 chrX 101663252 101663323 -60936607 - LTR37A LTR ERV1 -353 73 1 321 240 24 40 chrX 101663680 101663805 -60936125 + L1MD3 LINE L1 6994 7116 -879 280 244 11 56 chrX 101663805 101663895 -60936035 + MLT1F1 LTR MaLR 35 120 -447 843 228 26 0 chrX 101663895 101664088 -60935842 + L1MD3 LINE L1 7398 7595 -400 2023 239 52 14 chrX 101664126 101664316 -60935614 + L1MB7 LINE L1 5571 5752 -432 2002 133 0 14 chrX 101664316 101664648 -60935282 + AluSg SINE Alu 1 328 0 2023 239 52 14 chrX 101664648 101665038 -60934892 + L1MB7 LINE L1 5752 6174 -10 9170 153 31 51 chrX 101665057 101666990 -60932940 + L1M1 LINE L1 16 2040 -5525 6081 177 11 9 chrX 101666986 101668203 -60931727 + L1M1 LINE L1 3331 4544 -3021 * 2012 132 3 3 chrX 101668203 101668499 -60931431 + AluJb SINE Alu 1 296 -16 198 0 0 0 chrX 101668499 101668521 -60931409 + (CAAG)n Simple_repeat Simple_repeat 2 23 0 6081 177 11 9 chrX 101668521 101668862 -60931068 + L1M1 LINE L1 4543 4895 -2670 2235 179 5 12 chrX 101668865 101669267 -60930663 + MST-int LTR MaLR 837 1235 -416 1549 144 82 94 chrX 101669411 101669682 -60930248 + MSTA LTR MaLR 92 360 -68 2640 48 0 0 chrX 101669682 101669993 -60929937 + AluY SINE Alu 1 311 0 1549 144 82 94 chrX 101669993 101670062 -60929868 + MSTA LTR MaLR 360 428 0 1477 259 56 47 chrX 101670598 101671006 -60928924 + L1MC4a LINE L1 5493 5909 -1899 1026 212 15 5 chrX 101671006 101671209 -60928721 - MER3 DNA MER1_type -4 205 1 1477 259 56 47 chrX 101671209 101671333 -60928597 + L1MC4a LINE L1 5909 6030 -1778 1214 230 71 88 chrX 101671382 101671991 -60927939 + L1MC5 LINE L1 6605 7217 -744 1343 199 49 57 chrX 101672130 101672437 -60927493 + MLT1A1 LTR MaLR 2 307 -58 2420 129 126 5 chrX 101672437 101672817 -60927113 + MSTA LTR MaLR 1 426 -2 1343 199 49 57 chrX 101672817 101672876 -60927054 + MLT1A1 LTR MaLR 307 365 0 7622 128 31 26 chrX 101672897 101674122 -60925808 + Tigger3b DNA MER2_type 1 1231 0 396 177 207 37 chrX 101674199 101674363 -60925567 + L1MC5 LINE L1 7330 7521 -440 708 241 38 72 chrX 101674382 101674672 -60925258 + L1ME3A LINE L1 5417 5696 -474 6851 192 49 18 chrX 101674683 101675988 -60923942 + L1PA13 LINE L1 1 1345 -5442 6423 166 27 1 chrX 101675988 101676109 -60923821 + L1PA13 LINE L1 4856 4972 -1842 2338 103 0 0 chrX 101676109 101676409 -60923521 + AluSx SINE Alu 1 300 -12 6423 166 27 1 chrX 101676409 101678213 -60921717 + L1PA13 LINE L1 4972 6810 -4 573 275 72 14 chrX 101678213 101678435 -60921495 + L1ME3A LINE L1 5682 5916 -254 189 210 20 130 chrX 101678625 101678725 -60921205 + MIR SINE MIR 24 112 -96 282 376 34 7 chrX 101678749 101678898 -60921032 + MIR SINE MIR 9 161 -101 740 293 104 37 chrX 101679152 101679519 -60920411 + L2 LINE L2 2403 2744 -569 2092 61 86 14 chrX 101679519 101679797 -60920133 + AluY SINE Alu 2 299 -12 740 293 104 37 chrX 101679797 101680282 -60919648 + L2 LINE L2 2744 3313 0 1977 171 22 22 chrX 101680423 101680786 -60919144 + MLT1A1 LTR MaLR 1 363 -2 255 286 45 53 chrX 101680788 101680921 -60919009 + MER5A DNA MER1_type 34 165 -24 * 384 266 26 18 chrX 101680836 101680949 -60918981 - MER5A DNA MER1_type -69 120 7 2307 104 3 0 chrX 101680974 101681273 -60918657 + AluSx SINE Alu 1 300 -12 3038 214 31 24 chrX 101681930 101682828 -60917102 + L1ME1 LINE L1 5096 6000 -166 926 256 69 20 chrX 101683834 101684080 -60915850 - LTR33 LTR ERVL -263 258 1 2243 181 69 21 chrX 101684096 101684528 -60915402 + MLT1D LTR MaLR 1 453 -52 236 188 78 0 chrX 101684634 101684698 -60915232 - MIR SINE MIR -85 177 109 2320 85 7 26 chrX 101685739 101686045 -60913885 - AluSp SINE Alu -13 300 1 241 303 214 4 chrX 101686875 101687109 -60912821 - MLT1H1 LTR MaLR 0 555 273 472 139 13 0 chrX 101687136 101687211 -60912719 - MER53 DNA DNA 0 189 114 1791 203 12 53 chrX 101687211 101687624 -60912306 + MLT2D LTR ERVL 1 396 -18 330 134 134 0 chrX 101687635 101687702 -60912228 - MER53 DNA DNA -113 76 1 2067 114 123 0 chrX 101689597 101689905 -60910025 + MER7A DNA MER2_type 2 345 -1 1332 236 165 108 chrX 101690347 101690966 -60908964 - MLT1E2 LTR MaLR 0 626 1 323 260 63 24 chrX 101691881 101692008 -60907922 + MLT1I LTR MaLR 104 235 -174 363 322 39 64 chrX 101692640 101692873 -60907057 - MIR SINE MIR -6 256 30 525 178 10 0 chrX 101692934 101693035 -60906895 - MER20 DNA MER1_type 0 219 118 2408 67 0 0 chrX 101693609 101693908 -60906022 + AluY SINE Alu 1 299 -12 2398 75 3 0 chrX 101694234 101694527 -60905403 + AluSx SINE Alu 1 294 -18 497 296 98 5 chrX 101695685 101695888 -60904042 - MIR SINE MIR -23 239 18 3431 225 43 22 chrX 101696207 101696678 -60903252 - L1M4 LINE L1 -1893 4253 3753 4492 65 2 24 chrX 101696678 101697166 -60902764 - L1PA13 LINE L1 -1 6162 5688 2103 136 0 0 chrX 101697166 101697468 -60902462 - AluSx SINE Alu -10 302 1 4492 65 2 24 chrX 101697468 101697566 -60902364 - L1PA13 LINE L1 -475 5688 5589 3431 225 43 22 chrX 101697566 101697992 -60901938 - L1M4 LINE L1 -2393 3753 3337 1875 137 9 35 chrX 101698001 101698344 -60901586 - L1MA7 LINE L1 0 6291 5958 2239 92 3 10 chrX 101698373 101698677 -60901253 - AluSc SINE Alu -5 304 3 671 214 23 29 chrX 101698684 101698857 -60901073 - L1MB8 LINE L1 -116 6062 5891 243 211 0 46 chrX 101698845 101698954 -60900976 - L1MB8 LINE L1 -907 5393 5290 * 679 96 0 0 chrX 101698958 101699052 -60900878 - L1MB3 LINE L1 -12 6171 6078 2450 171 0 8 chrX 101699053 101699443 -60900487 + MER66B LTR ERV1 5 391 -95 401 63 0 0 chrX 101699443 101699502 -60900428 - MLT2A1 LTR ERVL 0 444 396 13705 105 12 1 chrX 101699505 101700244 -60899686 + MER66B-int LTR ERV1 4815 5544 -1132 192 40 0 0 chrX 101700244 101700269 -60899661 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 13705 105 12 1 chrX 101700269 101701370 -60898560 + MER66B-int LTR ERV1 5544 6676 0 3120 158 17 6 chrX 101701370 101701851 -60898079 + MER66B LTR ERV1 1 486 0 316 140 0 0 chrX 101701851 101701901 -60898029 - L1MB3 LINE L1 -100 6083 6034 594 299 71 73 chrX 101702283 101702861 -60897069 - L2 LINE L2 -581 2733 2157 443 306 21 31 chrX 101702878 101703071 -60896859 + MIR SINE MIR 1 191 -71 620 285 72 25 chrX 101703470 101703705 -60896225 + L1M4 LINE L1 -252 4294967289 -6287 551 200 34 14 chrX 101703770 101703992 -60895938 + L1M4 LINE L1 1644 1920 -4464 233 258 0 0 chrX 101703986 101704048 -60895882 + L1M4 LINE L1 3669 3730 -2652 * 1382 220 11 43 chrX 101704037 101704410 -60895520 + L1M4 LINE L1 4503 4863 -1519 20251 169 12 15 chrX 101704514 101704752 -60895178 + HERVL74 LTR ERVL 1177 1414 -4271 1714 166 25 0 chrX 101704752 101705029 -60894901 + AluJo SINE Alu 6 289 -23 20251 169 12 15 chrX 101705029 101708131 -60891799 + HERVL74 LTR ERVL 1414 4505 -1180 3349 234 30 7 chrX 101708131 101709043 -60890887 + L1MB5 LINE L1 3275 4207 -2175 364 179 0 48 chrX 101709043 101709127 -60890803 + MSTB1 LTR MaLR 1 80 -352 3190 212 12 36 chrX 101709132 101709346 -60890584 + L1M1 LINE L1 4774 4991 -1391 1590 186 49 98 chrX 101709346 101709754 -60890176 - MLT1B LTR MaLR 0 390 3 3190 212 12 36 chrX 101709754 101710354 -60889576 + L1M1 LINE L1 4991 5569 -813 1365 211 4 0 chrX 101710352 101710613 -60889317 + L1MB5 LINE L1 4263 4524 -1858 * 845 141 16 0 chrX 101710613 101710741 -60889189 - AluJo SINE Alu -177 135 6 185 59 59 0 chrX 101710781 101710815 -60889115 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 44613 42 2 2 chrX 101710816 101716952 -60882978 - L1PA4 LINE L1 -18 6137 2 1161 275 48 18 chrX 101716956 101717448 -60882482 + HERVL74 LTR ERVL 5071 5670 -15 2751 166 22 7 chrX 101717454 101717907 -60882023 + MER74C LTR ERVL 1 460 0 1866 168 21 0 chrX 101717908 101718284 -60881646 + L1MB5 LINE L1 5196 5579 -803 * 4208 143 6 7 chrX 101718261 101719314 -60880616 + L1PA14 LINE L1 5158 6394 -3 4653 172 33 2 chrX 101719323 101720138 -60879792 + L1MB5 LINE L1 5555 6394 -16 1464 212 0 4 chrX 101720314 101720588 -60879342 + AluJo SINE Alu 3 275 -37 306 0 0 0 chrX 101720593 101720627 -60879303 + (CA)n Simple_repeat Simple_repeat 1 34 0 619 252 13 0 chrX 101720813 101720964 -60878966 + L1ME4a LINE L1 5657 5809 -369 408 20 0 0 chrX 101721875 101721924 -60878006 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chrX 101722178 101722200 -60877730 + AT_rich Low_complexity Low_complexity 1 22 0 301 339 12 12 chrX 101724914 101725082 -60874848 + GA-rich Low_complexity Low_complexity 5 172 0 316 321 74 37 chrX 101725701 101725916 -60874014 + L1ME4a LINE L1 5846 6068 -53 240 293 0 0 chrX 101726737 101726795 -60873135 + MIR SINE MIR 37 94 -114 353 303 0 49 chrX 101726906 101727048 -60872882 + MER5A DNA MER1_type 2 136 -53 2217 173 32 46 chrX 101727098 101727312 -60872618 - L1M4 LINE L1 0 5734 5519 1894 169 3 17 chrX 101727312 101727667 -60872263 - L1MB7 LINE L1 -9 6175 5826 2217 173 32 46 chrX 101727667 101728133 -60871797 - L1M4 LINE L1 -215 5519 2308 385 252 91 7 chrX 101728314 101728457 -60871473 - MLT1I LTR MaLR 0 409 255 340 331 40 14 chrX 101728635 101728783 -60871147 - MIR SINE MIR -96 166 15 2251 122 0 0 chrX 101728799 101729103 -60870827 - AluSx SINE Alu -8 304 1 511 288 18 57 chrX 101730176 101730509 -60869421 + L1MCb LINE L1 423 742 -5680 307 307 7 36 chrX 101730759 101730899 -60869031 + L1MCb LINE L1 814 949 -5474 769 238 33 4 chrX 101731014 101731287 -60868643 + L1MCb LINE L1 1177 1457 -4966 3738 237 119 22 chrX 101731298 101732174 -60867756 + L1M4b LINE L1 20 1030 -5829 2118 120 7 0 chrX 101732174 101732465 -60867465 + AluSx SINE Alu 1 293 -19 3738 237 119 22 chrX 101732465 101732701 -60867229 + L1M4b LINE L1 1030 1241 -5618 1264 228 26 92 chrX 101732823 101733716 -60866214 + L1M4b LINE L1 2643 3456 -3501 * 2220 222 39 18 chrX 101733702 101734424 -60865506 + L1M4b LINE L1 4671 5407 -1550 936 143 19 91 chrX 101734413 101734678 -60865252 - L1M4 LINE L1 -1332 4814 4569 * 1341 237 86 19 chrX 101734779 101735256 -60864674 + L1MD3 LINE L1 4908 5416 -1541 212 59 29 0 chrX 101735284 101735318 -60864612 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3569 84 4 6 chrX 101735318 101735840 -60864090 - L1PA8 LINE L1 -24 6148 5628 6707 199 114 64 chrX 101735850 101738404 -60861526 + L1MD3 LINE L1 5427 8299 -507 508 236 0 24 chrX 101738404 101738531 -60861399 + MLT1F1 LTR MaLR 1 124 -443 6707 199 114 64 chrX 101738531 101739058 -60860872 + L1MD3 LINE L1 8299 8798 -8 232 173 0 0 chrX 101739469 101739521 -60860409 - L1ME LINE L1 -339 5782 5731 706 250 13 0 chrX 101739959 101740111 -60859819 + AluJb SINE Alu 136 289 -23 342 0 0 0 chrX 101741626 101741664 -60858266 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chrX 101741905 101741936 -60857994 + AT_rich Low_complexity Low_complexity 1 31 0 1494 225 62 31 chrX 101742216 101742669 -60857261 + L1MD2 LINE L1 5681 6147 -212 445 276 50 30 chrX 101745833 101746032 -60853898 - L1M4 LINE L1 -3794 2352 2150 390 316 57 32 chrX 101746029 101746276 -60853654 + L1ME4a LINE L1 5846 6098 -23 * 406 310 32 13 chrX 101747617 101747775 -60852155 + MER5A DNA MER1_type 28 188 -1 299 294 20 20 chrX 101749219 101749321 -60850609 + MIR SINE MIR 13 114 -148 315 0 0 0 chrX 101749433 101749468 -60850462 + (CAT)n Simple_repeat Simple_repeat 1 35 0 268 286 126 17 chrX 101749642 101749761 -60850169 + MIR SINE MIR 123 254 -8 191 146 24 0 chrX 101749769 101749810 -60850120 + (CAT)n Simple_repeat Simple_repeat 3 44 0 231 61 0 0 chrX 101750201 101750234 -60849696 + (CA)n Simple_repeat Simple_repeat 2 34 0 264 283 43 22 chrX 101750238 101750376 -60849554 + L1ME4a LINE L1 5978 6118 -3 291 196 36 0 chrX 101750820 101750876 -60849054 - L2 LINE L2 0 3272 3215 299 229 94 21 chrX 101751325 101751421 -60848509 - L2 LINE L2 -17 3296 3194 2268 192 104 16 chrX 101751433 101752047 -60847883 - L1ME2 LINE L1 -1 6163 5496 649 222 88 34 chrX 101752042 101752296 -60847634 + L1MC4 LINE L1 7561 7800 -242 * 230 0 33 0 chrX 101752296 101752326 -60847604 + (TA)n Simple_repeat Simple_repeat 2 32 0 649 222 88 34 chrX 101752326 101752458 -60847472 + L1MC4 LINE L1 7800 8041 -1 858 191 5 11 chrX 101802758 101802946 -60796984 + MLT1-int LTR MaLR 256 442 -929 3141 181 51 3 chrX 101802953 101803545 -60796385 + MER39B LTR ERV1 1 620 -33 2751 193 39 31 chrX 101803548 101804164 -60795766 + MER39B-int LTR ERV1 1 621 -5710 3110 155 8 21 chrX 101804166 101804700 -60795230 + MER1A DNA MER1_type 1 527 0 1895 217 92 18 chrX 101804752 101805264 -60794666 + MER39B-int LTR ERV1 833 1382 -4949 1022 186 75 81 chrX 101805388 101805683 -60794247 + MER39B-int LTR ERV1 1371 1663 -4668 4941 140 19 5 chrX 101805696 101806099 -60793831 + L1P3 LINE L1 5 426 -6035 293 47 23 0 chrX 101806099 101806142 -60793788 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4941 140 19 5 chrX 101806142 101806507 -60793423 + L1P3 LINE L1 426 784 -5677 258 215 0 31 chrX 101806509 101806574 -60793356 - MLT1B LTR MaLR -28 439 377 * 740 259 16 5 chrX 101806563 101806748 -60793182 - MLT1B LTR MaLR -203 187 1 1414 265 48 5 chrX 101806762 101807155 -60792775 - MLT1B-int LTR MaLR -1 1370 961 1330 270 47 26 chrX 101807481 101807903 -60792027 - MLT1B-int LTR MaLR -487 884 454 3474 166 17 12 chrX 101807914 101808564 -60791366 - MER39B LTR ERV1 0 653 1 678 245 8 68 chrX 101808626 101808863 -60791067 - MER39B-int LTR ERV1 -148 6183 5961 11809 168 39 41 chrX 101808921 101810269 -60789661 - MER39B-int LTR ERV1 -386 5945 4595 2181 136 0 0 chrX 101810269 101810579 -60789351 + AluSg SINE Alu 1 310 0 11809 168 39 41 chrX 101810579 101812138 -60787792 - MER39B-int LTR ERV1 -1736 4595 2963 502 229 81 88 chrX 101811886 101812170 -60787760 - LTR57-int LTR ERVL -4181 1162 881 * 649 223 12 36 chrX 101812184 101812414 -60787516 - MER39B-int LTR ERV1 -4231 2921 1350 411 78 0 0 chrX 101812539 101812603 -60787327 + (TC)n Simple_repeat Simple_repeat 2 65 0 6773 82 9 2 chrX 101812628 101815290 -60784640 - L1PA7 LINE L1 -1 6153 3300 235 135 0 19 chrX 101815587 101815639 -60784291 + LTR66 LTR ERVL 403 453 -157 244 316 20 0 chrX 101815651 101815749 -60784181 - L1M4 LINE L1 -3353 2793 2694 1345 214 27 14 chrX 101816828 101816954 -60782976 + AluJb SINE Alu 1 124 -188 423 0 0 0 chrX 101816954 101817001 -60782929 + (CA)n Simple_repeat Simple_repeat 2 48 0 1345 214 27 14 chrX 101817001 101817169 -60782761 + AluJb SINE Alu 124 299 -13 203 88 29 0 chrX 101817184 101817218 -60782712 + (TA)n Simple_repeat Simple_repeat 2 36 0 386 238 43 91 chrX 101818307 101818517 -60781413 + MLT1H1 LTR MaLR 202 401 -154 184 341 32 24 chrX 101819600 101819723 -60780207 - L2 LINE L2 -184 3088 2965 449 270 52 16 chrX 101820054 101820274 -60779656 - MIR3 SINE MIR -4 258 13 713 205 8 121 chrX 101820924 101821173 -60778757 + MLT1B LTR MaLR 165 385 -5 2850 249 35 28 chrX 101821178 101821624 -60778306 + MLT1B-int LTR MaLR 1 442 -929 3197 204 27 2 chrX 101821624 101822261 -60777669 + MER39B LTR ERV1 1 653 0 2850 249 35 28 chrX 101822261 101822695 -60777235 + MLT1B-int LTR MaLR 442 887 -484 1195 290 46 10 chrX 101823008 101823398 -60776532 + MLT1B-int LTR MaLR 950 1353 -18 710 253 17 0 chrX 101823427 101823601 -60776329 + MLT1B LTR MaLR 4 180 -210 378 256 0 0 chrX 101823603 101823689 -60776241 + MLT1H1 LTR MaLR 382 467 0 256 267 19 9 chrX 101825160 101825265 -60774665 - L1MCc LINE L1 -6293 130 25 300 324 9 0 chrX 101826148 101826253 -60773677 - Charlie1b DNA MER1_type -314 209 104 28 0 0 0 chrX 101827734 101827762 -60772168 + AT_rich Low_complexity Low_complexity 1 28 0 1983 144 17 0 chrX 101828640 101828938 -60770992 - AluSx SINE Alu -9 303 1 8726 161 11 45 chrX 101828993 101829261 -60770669 - L1PA12 LINE L1 -10 6158 5883 2250 141 11 16 chrX 101829261 101829638 -60770292 - THE1C LTR MaLR 0 375 1 8726 161 11 45 chrX 101829638 101831922 -60768008 - L1PA12 LINE L1 -285 5883 3673 370 329 64 16 chrX 101832130 101832379 -60767551 - LTR16A LTR ERVL -18 432 172 294 316 90 18 chrX 101832723 101833001 -60766929 - L1MEd LINE L1 -4881 1238 941 661 180 27 13 chrX 101833034 101833184 -60766746 + L1MA7 LINE L1 5059 5210 -936 374 252 32 32 chrX 101833286 101833409 -60766521 + MER41E LTR ERV1 54 176 -336 358 297 14 14 chrX 101833382 101833530 -60766400 + MER41B LTR ERV1 283 430 -205 * 4241 203 16 45 chrX 101833751 101833973 -60765957 + L1MA7 LINE L1 5202 5429 -862 2035 125 7 0 chrX 101833973 101834262 -60765668 - AluSg SINE Alu -19 291 1 4241 203 16 45 chrX 101834262 101835157 -60764773 + L1MA7 LINE L1 5429 6286 -5 758 269 18 9 chrX 101835170 101835391 -60764539 + L1M3 LINE L1 5468 5689 -482 7357 54 0 1 chrX 101836659 101837841 -60762089 + L1PA5 LINE L1 4973 6154 0 21 0 0 0 chrX 101838186 101838207 -60761723 + AT_rich Low_complexity Low_complexity 1 21 0 44038 31 21 1 chrX 101840322 101846353 -60753577 - L1PA2 LINE L1 0 6155 2 1016 301 72 7 chrX 101847080 101847496 -60752434 - LTR16A LTR ERVL -7 443 1 244 218 18 0 chrX 101847513 101847568 -60752362 - HAL1 LINE L1 -898 1609 1554 404 257 43 51 chrX 101847707 101847983 -60751947 - L1MEd LINE L1 -4881 1238 965 6883 73 17 0 chrX 101848027 101849034 -60750896 - L1PA8 LINE L1 0 6172 5161 539 265 53 12 chrX 101849076 101849246 -60750684 + MIR SINE MIR 77 253 -9 1216 178 73 152 chrX 101849682 101850109 -60749821 - MLT2D LTR ERVL 0 414 22 283 233 14 14 chrX 101850307 101850380 -60749550 - Tigger5 DNA MER2_type 0 2323 2251 400 250 77 48 chrX 101850744 101850912 -60749018 + MIR SINE MIR 18 190 -72 311 219 14 0 chrX 101851217 101851290 -60748640 + MER94 DNA DNA 27 100 -34 2619 169 24 9 chrX 101851641 101852108 -60747822 + MER101 LTR ERV1 1 474 0 333 0 0 0 chrX 101852714 101852751 -60747179 + (TG)n Simple_repeat Simple_repeat 2 38 0 1403 191 22 4 chrX 101852884 101853000 -60746930 + AluJb SINE Alu 2 114 -198 213 39 0 0 chrX 101853000 101853026 -60746904 + (CA)n Simple_repeat Simple_repeat 1 26 0 1403 191 22 4 chrX 101853026 101853182 -60746748 + AluJb SINE Alu 114 279 -33 452 252 9 0 chrX 101854229 101854336 -60745594 + Charlie1b DNA MER1_type 102 209 -314 327 236 19 9 chrX 101855218 101855324 -60744606 + L1MCc LINE L1 24 130 -6293 367 229 12 0 chrX 101856804 101856887 -60743043 - MLT1B LTR MaLR -2 465 382 688 221 76 23 chrX 101856891 101857063 -60742867 - MLT1B LTR MaLR -223 167 4 1265 300 26 8 chrX 101857105 101857485 -60742445 - MLT1B-int LTR MaLR -35 1336 950 2738 247 39 35 chrX 101857801 101858233 -60741697 - MLT1B-int LTR MaLR -488 883 454 3063 203 27 9 chrX 101858233 101858873 -60741057 - MER39B LTR ERV1 0 653 3 2738 247 39 35 chrX 101858873 101859320 -60740610 - MLT1B-int LTR MaLR -917 454 1 1037 209 41 98 chrX 101859322 101859710 -60740220 - MLT1B LTR MaLR -2 388 23 2111 120 0 7 chrX 101859713 101860021 -60739909 + MER1A DNA MER1_type 224 529 0 1222 208 213 11 chrX 101860057 101860432 -60739498 + LTR49-int LTR ERV1 765 1215 -5116 489 189 111 105 chrX 101860428 101860581 -60739349 + LTR49-int LTR ERV1 1412 1565 -4766 * 496 291 132 14 chrX 101861558 101861778 -60738152 + MIR SINE MIR 13 258 -4 1147 102 0 0 chrX 101862881 101863038 -60736892 - L1P LINE L1 -2690 3456 3300 431 78 16 0 chrX 101863311 101863375 -60736555 + (TA)n Simple_repeat Simple_repeat 2 66 0 273 306 20 0 chrX 101863399 101863497 -60736433 - L1M4 LINE L1 -3353 2793 2694 1377 210 27 14 chrX 101864572 101864698 -60735232 + AluJb SINE Alu 1 124 -188 261 0 0 0 chrX 101864698 101864727 -60735203 + (CA)n Simple_repeat Simple_repeat 2 30 0 1377 210 27 14 chrX 101864727 101864895 -60735035 + AluJb SINE Alu 124 299 -13 203 88 29 0 chrX 101864910 101864944 -60734986 + (TA)n Simple_repeat Simple_repeat 2 36 0 427 248 116 85 chrX 101865852 101866171 -60733759 + MLT1H1 LTR MaLR 37 365 -190 527 262 19 19 chrX 101867808 101867968 -60731962 - MIR SINE MIR -34 174 13 300 243 19 48 chrX 101868235 101868338 -60731592 - MER94 DNA DNA -34 100 1 553 248 50 71 chrX 101868944 101869142 -60730788 - LTR49-int LTR ERV1 -4766 1565 1372 1905 207 98 14 chrX 101869267 101869755 -60730175 - LTR49-int LTR ERV1 -4948 1383 855 2056 117 7 13 chrX 101869840 101870148 -60729782 - MER1A DNA MER1_type 0 529 224 1060 199 12 107 chrX 101870193 101870539 -60729391 + MLT1B LTR MaLR 76 388 -2 2585 272 34 27 chrX 101870541 101870988 -60728942 + MLT1B-int LTR MaLR 1 443 -928 3285 199 19 3 chrX 101870988 101871631 -60728299 + MER39B LTR ERV1 1 653 0 2585 272 34 27 chrX 101871631 101872064 -60727866 + MLT1B-int LTR MaLR 443 887 -484 1251 293 38 8 chrX 101872377 101872769 -60727161 + MLT1B-int LTR MaLR 950 1353 -18 583 264 63 6 chrX 101872798 101872972 -60726958 + MLT1B LTR MaLR 4 187 -280 309 202 48 48 chrX 101872974 101873058 -60726872 + MLT1B LTR MaLR 305 388 -2 284 264 19 9 chrX 101874545 101874651 -60725279 - L1MCc LINE L1 -6293 130 24 432 262 9 0 chrX 101875535 101875642 -60724288 - Charlie1b DNA MER1_type -314 209 102 2066 123 0 17 chrX 101877537 101877837 -60722093 - AluJb SINE Alu -17 295 1 351 65 0 0 chrX 101877899 101877945 -60721985 + (TA)n Simple_repeat Simple_repeat 2 47 0 282 73 0 0 chrX 101878010 101878051 -60721879 + (CA)n Simple_repeat Simple_repeat 2 42 0 2975 143 15 0 chrX 101878647 101879114 -60720816 - MER101 LTR ERV1 0 474 1 2232 97 10 0 chrX 101879154 101879452 -60720478 + AluSc SINE Alu 2 302 -7 298 197 53 0 chrX 101879777 101879853 -60720077 - MER94 DNA DNA -34 100 21 517 246 69 34 chrX 101880157 101880332 -60719598 - MIR SINE MIR -74 188 8 334 154 0 0 chrX 101880663 101880715 -60719215 + Tigger5 DNA MER2_type 1 52 -2271 332 233 0 0 chrX 101880687 101880760 -60719170 + Tigger5 DNA MER2_type 2251 2323 0 * 1251 182 85 133 chrX 101880954 101881328 -60718602 + MLT2D LTR ERVL 23 377 -37 581 0 14 0 chrX 101881328 101881397 -60718533 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 1251 182 85 133 chrX 101881397 101881434 -60718496 + MLT2D LTR ERVL 377 414 0 553 297 49 0 chrX 101881878 101882063 -60717867 - MIR SINE MIR -17 245 52 6761 81 7 3 chrX 101882080 101883086 -60716844 + L1PA8 LINE L1 5161 6170 -2 14179 33 2 1 chrX 101883222 101885667 -60714263 - L1PA2 LINE L1 0 6155 3711 7742 210 111 11 chrX 101885667 101888334 -60711596 - L1PA13 LINE L1 -3510 3287 339 * 8046 150 10 1 chrX 101888332 101890193 -60709737 - L1PA12 LINE L1 -5577 2004 7 5165 240 66 128 chrX 101890321 101890924 -60709006 + L2 LINE L2 19 658 -2655 442 239 68 8 chrX 101890924 101891041 -60708889 + FLAM_A SINE Alu 1 124 -9 5165 240 66 128 chrX 101891041 101891834 -60708096 + L2 LINE L2 658 1499 -1814 1688 124 193 15 chrX 101891834 101892165 -60707765 + MLT1B LTR MaLR 1 390 0 5165 240 66 128 chrX 101892165 101894281 -60705649 + L2 LINE L2 1499 3309 -4 1170 293 52 40 chrX 101894302 101894840 -60705090 - L1ME4a LINE L1 -190 5931 5395 2652 49 9 0 chrX 101894840 101895164 -60704766 - L1PA7 LINE L1 -1 6153 5827 1170 293 52 40 chrX 101895164 101895377 -60704553 - L1ME4a LINE L1 -726 5395 5186 2549 182 73 37 chrX 101895516 101896104 -60703826 - L1ME3A LINE L1 -9 6161 5553 349 273 34 95 chrX 101896446 101896585 -60703345 - L1ME3A LINE L1 -1497 4649 4503 1556 236 49 24 chrX 101896585 101897035 -60702895 + LTR40c LTR ERVL 1 461 -4 349 273 34 95 chrX 101897035 101897221 -60702709 - L1ME3A LINE L1 -1643 4503 4344 246 236 102 63 chrX 101897354 101897384 -60702546 - L2 LINE L2 -3 3310 3283 1676 173 83 54 chrX 101897384 101897828 -60702102 + MSTB2 LTR MaLR 1 457 0 246 236 102 63 chrX 101897828 101897924 -60702006 - L2 LINE L2 -30 3283 3179 1884 112 59 30 chrX 101897962 101898265 -60701665 + AluSx SINE Alu 1 312 0 322 320 0 10 chrX 101898606 101898706 -60701224 + MIR SINE MIR 2 100 -162 2030 133 3 0 chrX 101898978 101899264 -60700666 + AluSx SINE Alu 1 287 -25 198 103 0 0 chrX 101899264 101899293 -60700637 + (TA)n Simple_repeat Simple_repeat 2 30 0 193 304 0 29 chrX 101899359 101899428 -60700502 + MIR3 SINE MIR 141 207 -1 231 366 67 22 chrX 101899471 101899739 -60700191 - L2 LINE L2 -189 3083 2804 395 260 29 10 chrX 101899988 101900092 -60699838 - L2 LINE L2 0 3313 3208 329 277 115 7 chrX 101900112 101900260 -60699670 - L2 LINE L2 -880 2434 2271 2167 117 0 0 chrX 101900693 101900999 -60698931 + AluSg SINE Alu 1 306 0 1604 276 45 34 chrX 101901088 101902117 -60697813 + L1ME3A LINE L1 4672 5718 -452 5383 114 19 29 chrX 101902117 101902984 -60696946 + L1MA4 LINE L1 5436 6293 -7 1604 276 45 34 chrX 101902984 101903164 -60696766 + L1ME3A LINE L1 5718 5895 -275 534 259 56 12 chrX 101903418 101903580 -60696350 - L2 LINE L2 -1878 1436 1268 4644 160 57 10 chrX 101904338 101905161 -60694769 - MER21B LTR ERV1 -1 862 1 493 233 31 90 chrX 101905257 101905480 -60694450 + L1MC4 LINE L1 7833 8042 0 183 204 0 0 chrX 101906034 101906083 -60693847 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2465 66 3 13 chrX 101906424 101906728 -60693202 + AluSp SINE Alu 1 301 -12 289 359 33 16 chrX 101906763 101906947 -60692983 - L2 LINE L2 -213 3059 2873 1029 207 9 22 chrX 101909525 101909747 -60690183 - MER20 DNA MER1_type 0 219 1 236 302 0 88 chrX 101910371 101910563 -60689367 + C-rich Low_complexity Low_complexity 6 180 0 199 377 26 0 chrX 101911397 101911511 -60688419 + MIR3 SINE MIR 64 180 -28 424 256 73 30 chrX 101911738 101911902 -60688028 + MIR SINE MIR 17 187 -75 546 251 164 6 chrX 101912860 101913043 -60686887 + MIR SINE MIR 21 232 -30 500 301 71 12 chrX 101913197 101913436 -60686494 + MIR SINE MIR 16 262 0 382 319 16 39 chrX 101914723 101914905 -60685025 - MER5A DNA MER1_type -1 188 11 253 312 140 0 chrX 101914903 101914996 -60684934 + MIR SINE MIR 15 120 -142 * 240 200 0 0 chrX 101915064 101915124 -60684806 + A-rich Low_complexity Low_complexity 1 60 0 285 204 23 68 chrX 101915350 101915438 -60684492 + MIR SINE MIR 67 150 -112 272 274 184 36 chrX 101915519 101915742 -60684188 + MIR SINE MIR 1 256 -6 221 194 15 30 chrX 101915947 101916014 -60683916 + (CCCG)n Simple_repeat Simple_repeat 2 67 0 324 311 82 12 chrX 101919152 101919409 -60680521 - L1ME4a LINE L1 -12 6109 1152 205 288 38 30 chrX 101921890 101922022 -60677908 + L2 LINE L2 1985 2117 -1197 189 283 65 43 chrX 101922056 101922148 -60677782 - MIR SINE MIR -13 249 156 295 338 28 7 chrX 101922178 101922320 -60677610 - MIR SINE MIR -101 161 17 210 255 108 20 chrX 101922339 101922441 -60677489 - MIR SINE MIR -83 179 69 340 222 28 37 chrX 101923125 101923233 -60676697 - MIR SINE MIR -4 258 152 1614 232 52 87 chrX 101923286 101923962 -60675968 - L1ME3A LINE L1 -34 6136 5485 * 2475 260 60 9 chrX 101923960 101924775 -60675155 - L1ME3A LINE L1 -1669 4477 3621 446 261 39 43 chrX 101924835 101925042 -60674888 - L1ME LINE L1 -298 5823 5618 382 246 80 40 chrX 101925271 101925446 -60674484 - L1MC5 LINE L1 -33 7928 7747 501 47 0 0 chrX 101925459 101925523 -60674407 + (TA)n Simple_repeat Simple_repeat 2 65 0 745 172 0 8 chrX 101925523 101925645 -60674285 - FLAM_C SINE Alu -21 122 2 456 96 60 24 chrX 101925697 101925780 -60674150 - L1MB4 LINE L1 -1 6179 6094 330 78 0 39 chrX 101925737 101925788 -60674142 - L1MB5 LINE L1 -39 6135 6087 553 115 0 0 chrX 101925872 101925959 -60673971 - AluS SINE Alu 0 312 226 660 255 13 0 chrX 101926497 101926650 -60673280 + MIR SINE MIR 87 241 -21 6963 60 9 0 chrX 101927144 101928012 -60671918 - L1PA7 LINE L1 -3 6151 5276 2021 131 3 20 chrX 101928041 101928338 -60671592 + AluJo SINE Alu 1 292 -20 2365 99 6 6 chrX 101928407 101928719 -60671211 - AluSx SINE Alu 0 312 1 334 248 51 57 chrX 101929057 101929214 -60670716 - MIR SINE MIR 0 262 107 206 217 203 14 chrX 101929276 101929345 -60670585 - MIR SINE MIR -70 192 111 549 272 6 6 chrX 101929424 101929597 -60670333 + L1MD2 LINE L1 4465 4637 -1509 1792 153 0 8 chrX 101929597 101929865 -60670065 + AluJo SINE Alu 1 266 -46 4373 189 66 36 chrX 101929892 101929944 -60669986 + L1MD2 LINE L1 5272 5321 -1038 1792 182 10 0 chrX 101929944 101930241 -60669689 + AluJo SINE Alu 1 300 -12 4373 189 66 36 chrX 101930241 101931242 -60668688 + L1MD2 LINE L1 5321 6357 -2 2279 122 0 0 chrX 101931254 101931566 -60668364 + AluSx SINE Alu 1 312 0 30 27 0 0 chrX 101931771 101931808 -60668122 + AT_rich Low_complexity Low_complexity 1 37 0 1534 160 91 9 chrX 101931835 101932166 -60667764 - Charlie1 DNA MER1_type -58 2703 2346 249 211 0 70 chrX 101932177 101932234 -60667696 - Charlie1 DNA MER1_type -2704 57 5 292 229 0 0 chrX 101932240 101932310 -60667620 + L1MC5 LINE L1 7713 7782 -179 360 103 0 0 chrX 101932312 101932370 -60667560 + (CA)n Simple_repeat Simple_repeat 2 59 0 1074 188 30 0 chrX 101932382 101932579 -60667351 + MER82 DNA MER2_type 2 204 -449 2096 208 50 11 chrX 101932872 101933309 -60666621 + MER82 DNA MER2_type 199 652 -1 254 184 0 11 chrX 101933312 101933399 -60666531 + (TA)n Simple_repeat Simple_repeat 1 86 0 321 26 0 0 chrX 101933429 101933467 -60666463 + (TG)n Simple_repeat Simple_repeat 1 38 0 323 184 40 13 chrX 101933492 101933568 -60666362 + L1MC5 LINE L1 7836 7913 -48 254 328 57 42 chrX 101934135 101934397 -60665533 + L2 LINE L2 1497 1762 -1552 1900 206 71 48 chrX 101934451 101934987 -60664943 - MLT1H1 LTR MaLR 0 555 11 565 317 174 35 chrX 101934991 101935593 -60664337 + L2 LINE L2 1820 2505 -809 2224 250 45 72 chrX 101936115 101936939 -60662991 + L1ME LINE L1 1 802 -5268 204 409 23 0 chrX 101937051 101937139 -60662791 + L2 LINE L2 2558 2647 -667 420 294 38 63 chrX 101937378 101937616 -60662314 - MLT1K LTR MaLR -188 400 169 246 130 22 0 chrX 101937821 101937867 -60662063 + MLT1J LTR MaLR 5 51 -460 735 212 120 0 chrX 101938048 101938232 -60661698 + MIR SINE MIR 17 222 -40 334 313 68 44 chrX 101938348 101938597 -60661333 + L2 LINE L2 2654 2908 -406 685 325 151 16 chrX 101938634 101939324 -60660606 + L2 LINE L2 1986 2768 -546 195 433 117 8 chrX 101939351 101939471 -60660459 - L2 LINE L2 -25 3247 3115 248 155 56 0 chrX 101939723 101939794 -60660136 + (TA)n Simple_repeat Simple_repeat 1 75 0 796 275 55 5 chrX 101940542 101940760 -60659170 - MIR SINE MIR -10 252 24 195 42 0 0 chrX 101940769 101940793 -60659137 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2129 175 134 0 chrX 101941035 101941453 -60658477 + MER101 LTR ERV1 1 474 0 1183 173 19 9 chrX 101941703 101941917 -60658013 + AluJo SINE Alu 7 222 -90 4096 128 63 50 chrX 101941917 101942662 -60657268 - LTR1 LTR ERV1 0 785 31 520 160 0 0 chrX 101942729 101942804 -60657126 + AluSg/x SINE Alu 219 293 -19 2059 129 3 7 chrX 101942806 101943100 -60656830 + AluSx SINE Alu 1 293 -19 2263 93 0 0 chrX 101943104 101943436 -60656494 + AluSc SINE Alu 1 332 0 689 290 50 5 chrX 101943459 101943680 -60656250 - MIR SINE MIR -28 234 4 1160 168 0 15 chrX 101943695 101943891 -60656039 - AluJb SINE Alu -14 298 106 252 0 0 0 chrX 101943893 101943921 -60656009 + (TG)n Simple_repeat Simple_repeat 2 29 0 224 313 24 24 chrX 101944053 101944136 -60655794 + L2 LINE L2 2977 3059 -213 1317 180 17 13 chrX 101944590 101944829 -60655101 + L1M4 LINE L1 14 253 -6289 398 266 80 1 chrX 101944868 101945035 -60654895 + L1M4 LINE L1 4915 5092 -1054 1887 132 36 0 chrX 101945178 101945458 -60654472 - AluJb SINE Alu -22 290 1 1343 161 14 0 chrX 101945609 101945820 -60654110 + AluJb SINE Alu 77 290 -22 470 123 161 0 chrX 101946191 101946239 -60653691 + L1P3 LINE L1 6 45 -6416 1901 80 0 51 chrX 101946239 101946514 -60653416 + AluY SINE Alu 44 304 -7 470 123 161 0 chrX 101946514 101946546 -60653384 + L1P3 LINE L1 45 99 -6362 * 9622 120 7 11 chrX 101946537 101948047 -60651883 + L1P3 LINE L1 1178 2680 -3781 240 121 0 0 chrX 101948049 101948082 -60651848 - L1P3 LINE L1 -5251 1210 1178 * 698 67 11 0 chrX 101948073 101948163 -60651767 - L1P3 LINE L1 -6362 99 9 24652 55 0 0 chrX 101948268 101952033 -60647897 + L1PA3 LINE L1 2370 6153 -2 3235 65 0 0 chrX 101952033 101952416 -60647514 + L1PA6 LINE L1 5770 6154 0 2168 233 74 17 chrX 101952807 101953402 -60646528 - MLT1G LTR MaLR 0 590 2 2280 127 0 0 chrX 101953521 101953829 -60646101 + AluSx SINE Alu 1 308 -4 2699 181 63 9 chrX 101953964 101954501 -60645429 + MER90 LTR ERV1 9 574 -1 3464 29 0 0 chrX 101955651 101956033 -60643897 - L1PA4 LINE L1 -4 6151 5770 2302 70 0 0 chrX 101956035 101956308 -60643622 - AluSq SINE Alu -40 273 1 716 223 157 66 chrX 101956710 101957029 -60642901 - MER7A DNA MER2_type 0 346 1 4649 134 26 0 chrX 101957419 101958375 -60641555 + L1MA7 LINE L1 4999 5976 -315 249 161 36 0 chrX 101958386 101958442 -60641488 + L1MA7 LINE L1 6104 6161 -130 491 167 79 0 chrX 101958474 101958600 -60641330 + L1MA7 LINE L1 6156 6291 0 838 75 0 9 chrX 101958731 101958838 -60641092 - AluSg/x SINE Alu -14 298 193 910 222 5 0 chrX 101958883 101959068 -60640862 + MER5A DNA MER1_type 4 189 0 2245 89 0 37 chrX 101959332 101959656 -60640274 + AluSx SINE Alu 1 312 0 202 348 62 62 chrX 101959795 101960019 -60639911 + L2 LINE L2 3027 3250 -22 747 270 22 22 chrX 101960979 101961201 -60638729 + MIR SINE MIR 17 238 -24 365 213 38 159 chrX 101961440 101961679 -60638251 - MIR SINE MIR -8 254 45 1341 193 89 71 chrX 101963231 101963656 -60636274 + LTR16A1 LTR ERVL 14 446 -11 28 61 0 0 chrX 101964604 101964653 -60635277 + AT_rich Low_complexity Low_complexity 1 49 0 2169 119 23 0 chrX 101965138 101965441 -60634489 + AluSg SINE Alu 1 310 0 2726 107 112 7 chrX 101965526 101965955 -60633975 - MER101 LTR ERV1 0 474 1 483 234 0 9 chrX 101966201 101966308 -60633622 + L1M4 LINE L1 4847 4952 -1194 1152 240 45 13 chrX 101966323 101966631 -60633299 + MER110A LTR ERV1 151 468 0 396 0 0 0 chrX 101966666 101966710 -60633220 + (CA)n Simple_repeat Simple_repeat 2 45 0 1989 108 90 0 chrX 101967259 101967538 -60632392 - AluSx SINE Alu -8 304 1 1920 137 7 0 chrX 101968172 101968481 -60631449 + AluSx SINE Alu 3 313 0 218 271 17 0 chrX 101968957 101969016 -60630914 + CT-rich Low_complexity Low_complexity 4 63 0 367 291 107 19 chrX 101969361 101969567 -60630363 - L2 LINE L2 -179 3093 2870 279 190 70 80 chrX 101969596 101969696 -60630234 + L2 LINE L2 3166 3264 -8 245 266 181 0 chrX 101969707 101969801 -60630129 + MIR SINE MIR 20 130 -78 336 258 161 85 chrX 101969904 101970334 -60629596 - L1M2 LINE L1 -5453 1396 650 232 319 19 9 chrX 101970672 101970838 -60629092 + CT-rich Low_complexity Low_complexity 1 215 0 21 0 0 0 chrX 101972449 101972470 -60627460 + AT_rich Low_complexity Low_complexity 1 21 0 2176 131 0 0 chrX 101973140 101973438 -60626492 - AluSx SINE Alu -14 298 1 26 0 0 0 chrX 101974828 101974854 -60625076 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chrX 101975103 101975131 -60624799 + AT_rich Low_complexity Low_complexity 1 28 0 267 294 65 0 chrX 101975148 101975240 -60624690 - L1ME4a LINE L1 -73 6048 5951 681 263 84 37 chrX 101975317 101975614 -60624316 - L1ME4a LINE L1 -292 5829 5519 1657 181 0 55 chrX 101975691 101976017 -60623913 + AluJb SINE Alu 2 309 -3 375 235 0 0 chrX 101976378 101976446 -60623484 + L2 LINE L2 3205 3272 0 1078 222 9 9 chrX 101976544 101976765 -60623165 - AluJo SINE Alu -15 297 77 21 57 0 0 chrX 101976909 101976944 -60622986 + AT_rich Low_complexity Low_complexity 1 35 0 1245 179 24 0 chrX 101977568 101977780 -60622150 + AluJo SINE Alu 6 222 -90 614 160 0 10 chrX 101977785 101977885 -60622045 + AluJb SINE Alu 190 288 -24 1137 226 82 10 chrX 101977935 101978324 -60621606 + L1ME4a LINE L1 5492 5908 -213 487 259 284 0 chrX 101978590 101978791 -60621139 - MIR SINE MIR 0 262 5 760 221 46 9 chrX 101978865 101979082 -60620848 - L1MC5 LINE L1 -49 7912 7688 365 278 0 23 chrX 101980316 101980449 -60619481 - L1MC4a LINE L1 -1983 5825 5696 3507 177 33 33 chrX 101980548 101981720 -60618210 - L1MB7 LINE L1 -20 6164 4993 2104 104 0 13 chrX 101981720 101982018 -60617912 - AluSq SINE Alu 0 313 20 788 200 0 0 chrX 101982020 101982150 -60617780 - FLAM_A SINE Alu -3 130 1 3507 177 33 33 chrX 101982150 101982429 -60617501 - L1MB7 LINE L1 -1192 4992 4714 1604 171 0 8 chrX 101982429 101982687 -60617243 + AluJb SINE Alu 14 269 -43 3507 177 33 33 chrX 101982687 101983311 -60616619 - L1MB7 LINE L1 -1470 4714 4050 710 225 0 0 chrX 101983305 101983474 -60616456 - L1MB7 LINE L1 -2369 3777 3609 * 1930 154 0 10 chrX 101983540 101983851 -60616079 - AluJo SINE Alu -4 308 1 189 0 0 0 chrX 101983859 101983880 -60616050 + (T)n Simple_repeat Simple_repeat 1 21 0 247 195 0 126 chrX 101984936 101985023 -60614907 + L2 LINE L2 2250 2325 -989 369 264 189 20 chrX 101985263 101985411 -60614519 + MIR3 SINE MIR 25 197 -11 2337 109 0 3 chrX 101985546 101985857 -60614073 - AluSg SINE Alu 0 310 1 532 269 144 1 chrX 101986391 101986578 -60613352 - MIR SINE MIR -14 248 38 2309 102 13 0 chrX 101987031 101987335 -60612595 - AluSx SINE Alu -4 308 1 184 308 168 28 chrX 101987668 101987811 -60612119 + L2 LINE L2 3127 3289 -24 26 0 0 0 chrX 101988036 101988062 -60611868 + AT_rich Low_complexity Low_complexity 1 26 0 283 180 110 80 chrX 101988069 101988169 -60611761 + L1MA10 LINE L1 6184 6286 -48 1352 187 60 42 chrX 101988347 101988630 -60611300 - AluJb SINE Alu -8 304 17 914 118 0 15 chrX 101988642 101988777 -60611153 - FLAM_C SINE Alu 0 133 1 2187 91 27 10 chrX 101989177 101989475 -60610455 - AluSx SINE Alu -9 303 1 2149 98 42 0 chrX 101990666 101990952 -60608978 - AluSg SINE Alu -12 298 1 739 231 16 5 chrX 101993469 101993655 -60606275 + MER5A DNA MER1_type 1 188 -1 25 51 0 0 chrX 101997611 101997650 -60602280 + AT_rich Low_complexity Low_complexity 1 39 0 239 204 0 37 chrX 101999496 101999550 -60600380 - Charlie5 DNA MER1_type -2559 53 2 963 188 29 29 chrX 101999553 101999761 -60600169 - MER3 DNA MER1_type -1 208 1 1785 174 3 33 chrX 101999889 102000194 -60599736 - AluJo SINE Alu -16 296 1 2143 98 3 44 chrX 102000534 102000851 -60599079 - AluSx SINE Alu -8 304 1 1975 128 10 0 chrX 102001167 102001456 -60598474 + AluSx SINE Alu 1 292 -20 413 218 60 81 chrX 102001471 102001664 -60598266 - L1MC5 LINE L1 -68 7893 7704 1678 163 17 33 chrX 102001664 102001964 -60597966 - AluJb SINE Alu -17 295 1 413 218 60 81 chrX 102001964 102002004 -60597926 - L1MC5 LINE L1 -257 7704 7665 28 61 0 0 chrX 102002006 102002055 -60597875 + AT_rich Low_complexity Low_complexity 1 49 0 349 244 62 145 chrX 102002631 102002678 -60597252 - MIR3 SINE MIR -9 199 150 889 174 56 11 chrX 102002678 102002856 -60597074 - MER5A DNA MER1_type -3 186 1 349 244 62 145 chrX 102002856 102003001 -60596929 - MIR3 SINE MIR -58 150 23 543 256 84 53 chrX 102003245 102003566 -60596364 - MARNA DNA Mariner -238 348 18 554 297 16 0 chrX 102003700 102003828 -60596102 - MIR3 SINE MIR -39 169 40 781 212 42 62 chrX 102003937 102004064 -60595866 + MER5A DNA MER1_type 1 124 -65 1871 161 3 0 chrX 102004064 102004363 -60595567 - AluJb SINE Alu -12 300 1 781 212 42 62 chrX 102004363 102004428 -60595502 + MER5A DNA MER1_type 124 189 0 331 191 16 175 chrX 102004444 102004496 -60595434 + MER5B DNA MER1_type 14 36 -142 2284 109 0 3 chrX 102004496 102004800 -60595130 + AluSq SINE Alu 1 303 -10 331 191 16 175 chrX 102004800 102004873 -60595057 + MER5B DNA MER1_type 36 119 -59 2373 173 174 114 chrX 102004879 102005184 -60594746 - L1MD3 LINE L1 -1 7994 7709 2375 112 0 6 chrX 102005184 102005498 -60594432 - AluSx SINE Alu 0 312 1 2373 173 174 114 chrX 102005498 102005762 -60594168 - L1MD3 LINE L1 -286 7709 7462 432 153 46 15 chrX 102005762 102005855 -60594075 - MLT1F1 LTR MaLR -445 122 35 2373 173 174 114 chrX 102005855 102005911 -60594019 - L1MD3 LINE L1 -533 7462 7411 2305 99 0 13 chrX 102005911 102006223 -60593707 - AluSx SINE Alu -4 308 1 2373 173 174 114 chrX 102006223 102006468 -60593462 - L1MD3 LINE L1 -584 7411 6761 1708 184 7 3 chrX 102006482 102006775 -60593155 - AluJo SINE Alu -18 294 1 250 200 280 10 chrX 102007026 102007126 -60592804 + MER5A DNA MER1_type 45 171 -18 * 518 198 15 8 chrX 102007048 102007156 -60592774 - MER5A DNA MER1_type -77 112 4 1381 214 136 29 chrX 102007284 102007794 -60592136 + MLT1F1 LTR MaLR 1 567 0 444 248 80 18 chrX 102007878 102007991 -60591939 - L2 LINE L2 -1 3312 3193 2503 89 0 0 chrX 102007992 102008305 -60591625 - AluSq SINE Alu 0 313 1 2141 137 0 9 chrX 102009384 102009699 -60590231 + AluSx SINE Alu 1 312 0 2254 92 0 0 chrX 102009751 102010059 -60589871 + AluSx SINE Alu 1 308 0 1195 142 4 91 chrX 102010061 102010372 -60589558 - MER66-int LTR ERV1 -2255 4421 3497 303 240 52 0 chrX 102010391 102010487 -60589443 - MER66-int LTR ERV1 -2495 4181 4081 535 196 25 127 chrX 102010513 102010802 -60589128 - MER66A LTR ERV1 -139 339 108 1417 228 90 27 chrX 102010852 102011330 -60588600 + L1ME3A LINE L1 5654 6161 -9 39 50 0 0 chrX 102011403 102011463 -60588467 + AT_rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chrX 102011635 102011663 -60588267 + AT_rich Low_complexity Low_complexity 1 28 0 1382 296 59 12 chrX 102011737 102012632 -60587298 + L1M4 LINE L1 2230 3166 -2980 928 123 74 49 chrX 102012659 102012822 -60587108 - AluSg/x SINE Alu -9 303 137 605 243 7 0 chrX 102012822 102012958 -60586972 + L2 LINE L2 2462 2598 -716 589 305 19 74 chrX 102012968 102013332 -60586598 - LTR16B LTR ERVL -120 344 1 1105 182 72 5 chrX 102013381 102013590 -60586340 + MER58A DNA MER1_type 1 223 -1 1381 261 319 20 chrX 102013731 102014529 -60585401 - L2 LINE L2 -569 2745 1709 438 69 0 0 chrX 102015139 102015197 -60584733 + (TG)n Simple_repeat Simple_repeat 2 59 0 789 211 20 0 chrX 102015784 102015931 -60583999 + FRAM SINE Alu 1 150 -16 260 120 27 27 chrX 102015934 102016009 -60583921 + (TA)n Simple_repeat Simple_repeat 2 76 0 496 272 29 22 chrX 102016022 102016158 -60583772 - MIR SINE MIR -95 167 31 609 291 67 11 chrX 102016187 102016366 -60583564 - MIR SINE MIR -57 205 17 350 241 56 28 chrX 102016582 102016690 -60583240 + MIR SINE MIR 76 186 -76 2234 111 0 9 chrX 102016948 102017263 -60582667 - AluSx SINE Alu 0 312 1 445 268 153 82 chrX 102017560 102017914 -60582016 - L2 LINE L2 0 3313 2935 206 339 0 0 chrX 102017899 102017961 -60581969 + L2 LINE L2 3209 3270 -2 * 2275 115 0 0 chrX 102018285 102018589 -60581341 + AluSq SINE Alu 1 304 -9 1277 146 60 9 chrX 102018589 102018987 -60580943 + L1ME LINE L1 5110 5924 -242 479 114 13 0 chrX 102018987 102019064 -60580866 + L1PA16 LINE L1 6071 6150 -16 4701 118 13 47 chrX 102019065 102019124 -60580806 + L1MA5 LINE L1 5469 5528 -772 2253 110 3 0 chrX 102019124 102019424 -60580506 - AluSx SINE Alu -11 301 1 4701 118 13 47 chrX 102019424 102020222 -60579708 + L1MA5 LINE L1 5528 6297 -3 395 107 13 0 chrX 102020234 102020309 -60579621 + (GA)n Simple_repeat Simple_repeat 1 76 0 600 198 12 99 chrX 102020309 102020344 -60579586 + MER5B DNA MER1_type 31 67 -111 1947 126 11 18 chrX 102020344 102020651 -60579279 + AluSx SINE Alu 1 305 0 600 198 12 99 chrX 102020651 102020776 -60579154 + MER5B DNA MER1_type 67 178 0 1499 165 41 0 chrX 102021178 102021421 -60578509 - AluJo SINE Alu -59 253 1 713 219 20 0 chrX 102021428 102021574 -60578356 - MIR SINE MIR -70 192 44 841 171 40 126 chrX 102021587 102021937 -60577993 + MER33 DNA MER1_type 1 320 -4 504 346 33 49 chrX 102022237 102022604 -60577326 - L2 LINE L2 -459 2855 2495 2111 105 0 23 chrX 102022712 102023017 -60576913 - AluSq SINE Alu -15 298 1 195 129 0 0 chrX 102023090 102023121 -60576809 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 249 242 74 11 chrX 102023133 102023228 -60576702 + MIR3 SINE MIR 82 182 -26 2744 137 31 2 chrX 102023848 102024300 -60575630 - MER101 LTR ERV1 0 474 10 403 275 20 75 chrX 102024744 102024944 -60574986 + MER5A DNA MER1_type 1 189 0 556 229 50 50 chrX 102025229 102025469 -60574461 - L1M4 LINE L1 -2079 4067 3828 1572 164 26 55 chrX 102026841 102027151 -60572779 - AluJb SINE Alu -11 301 1 22 0 0 0 chrX 102027151 102027173 -60572757 + AT_rich Low_complexity Low_complexity 1 22 0 4264 176 30 19 chrX 102027356 102028199 -60571731 + L1MB7 LINE L1 5320 6171 -13 207 100 0 0 chrX 102028199 102028229 -60571701 + (CATA)n Simple_repeat Simple_repeat 3 32 0 825 266 28 14 chrX 102028230 102028448 -60571482 - MLT1H LTR MaLR -328 221 1 1916 148 10 7 chrX 102028732 102029035 -60570895 - AluJb SINE Alu -8 304 1 246 32 0 0 chrX 102029145 102029176 -60570754 + (TC)n Simple_repeat Simple_repeat 2 32 0 465 183 0 21 chrX 102029176 102029318 -60570612 + (TA)n Simple_repeat Simple_repeat 1 139 0 207 100 0 0 chrX 102029351 102029381 -60570549 + (TA)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chrX 102029431 102029453 -60570477 + (TGAG)n Simple_repeat Simple_repeat 2 23 0 871 187 0 0 chrX 102029454 102029593 -60570337 - FRAM SINE Alu -37 139 1 28 61 0 0 chrX 102029806 102029855 -60570075 + AT_rich Low_complexity Low_complexity 1 49 0 309 243 0 0 chrX 102029855 102029925 -60570005 - L1ME LINE L1 -424 5697 5628 816 123 0 0 chrX 102029925 102030031 -60569899 + AluJb SINE Alu 1 106 -206 2104 137 0 0 chrX 102030266 102030577 -60569353 + AluSx SINE Alu 1 311 0 234 261 31 0 chrX 102030598 102030663 -60569267 + L1ME4a LINE L1 5574 5640 -481 848 160 8 0 chrX 102030672 102030797 -60569133 - FLAM_C SINE Alu -17 126 1 808 285 49 23 chrX 102030797 102030859 -60569071 + L1ME4a LINE L1 5628 5687 -434 441 163 0 0 chrX 102030859 102030939 -60568991 + MER116 DNA Mariner 1 80 0 808 285 49 23 chrX 102030939 102031266 -60568664 + L1ME4a LINE L1 5687 6027 -94 2139 122 19 50 chrX 102031267 102031643 -60568287 + THE1B LTR MaLR 1 364 0 1817 162 0 11 chrX 102031677 102032003 -60567927 - AluJb SINE Alu 0 323 1 22 0 0 0 chrX 102032030 102032052 -60567878 + AT_rich Low_complexity Low_complexity 1 22 0 1003 188 32 5 chrX 102032116 102032302 -60567628 + AluJb SINE Alu 108 298 -14 211 333 90 65 chrX 102032489 102032843 -60567087 + L2 LINE L2 2865 3227 -45 623 278 57 20 chrX 102032886 102033131 -60566799 + L2 LINE L2 2808 3061 -211 919 201 159 65 chrX 102033749 102033799 -60566131 + MER102b DNA MER1_type 1 45 -1383 386 19 0 19 chrX 102033799 102033851 -60566079 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2131 95 3 11 chrX 102033853 102034137 -60565793 - AluSx SINE Alu -28 284 3 919 201 159 65 chrX 102034137 102034337 -60565593 + MER102b DNA MER1_type 45 290 -1138 2420 104 3 0 chrX 102034337 102034646 -60565284 - AluSx SINE Alu -2 310 1 919 201 159 65 chrX 102034646 102034700 -60565230 + MER102b DNA MER1_type 290 338 -3 2157 119 7 0 chrX 102034700 102035002 -60564928 - AluSq SINE Alu -6 307 4 180 0 0 0 chrX 102035040 102035060 -60564870 + (TGG)n Simple_repeat Simple_repeat 3 22 0 219 36 0 0 chrX 102035061 102035089 -60564841 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1795 156 4 4 chrX 102035096 102035372 -60564558 - AluJb SINE Alu -32 280 5 916 208 32 67 chrX 102035383 102035695 -60564235 - L1MC5 LINE L1 -37 7924 7624 221 333 27 0 chrX 102036013 102036088 -60563842 - MIR3 SINE MIR -123 85 9 399 284 103 37 chrX 102036143 102036386 -60563544 - MIR SINE MIR -1 261 3 347 200 296 22 chrX 102036390 102036525 -60563405 + MIR SINE MIR 21 192 -70 844 61 0 0 chrX 102036535 102036634 -60563296 + AluS SINE Alu 1 99 -213 342 109 164 0 chrX 102036634 102036689 -60563241 - AluJ/FLAM SINE Alu -238 64 1 1464 144 58 21 chrX 102036689 102036932 -60562998 + AluSx SINE Alu 30 281 -31 976 16 0 16 chrX 102036935 102037059 -60562871 + (GAAA)n Simple_repeat Simple_repeat 2 123 0 258 237 0 0 chrX 102037064 102037123 -60562807 + MIR SINE MIR 199 257 -5 1941 147 14 0 chrX 102037798 102038090 -60561840 - AluJo SINE Alu -16 296 1 339 179 45 0 chrX 102038187 102038254 -60561676 - MLT1D LTR MaLR -1 504 435 1432 201 15 4 chrX 102038266 102038540 -60561390 + AluJo SINE Alu 3 279 -33 718 178 142 67 chrX 102038557 102038782 -60561148 - MLT1D LTR MaLR -125 380 139 905 196 0 49 chrX 102038853 102039037 -60560893 - AluJo SINE Alu -1 311 137 512 153 0 147 chrX 102039037 102039187 -60560743 - MLT1D LTR MaLR -498 128 1 1154 106 19 6 chrX 102039886 102040047 -60559883 + AluSq SINE Alu 1 163 -150 201 119 48 0 chrX 102040047 102040089 -60559841 + A-rich Low_complexity Low_complexity 3 46 0 2198 110 0 10 chrX 102040209 102040532 -60559398 + AluSx SINE Alu 1 320 0 485 183 0 21 chrX 102040776 102040869 -60559061 - AluJo SINE Alu -169 143 53 2217 105 3 3 chrX 102040870 102041164 -60558766 + AluSx SINE Alu 1 294 -18 418 264 25 8 chrX 102041254 102041375 -60558555 - MIR SINE MIR -79 183 61 1750 92 131 8 chrX 102041407 102041667 -60558263 - AluSg1 SINE Alu -17 292 1 296 259 62 0 chrX 102041706 102041787 -60558143 + L1ME LINE L1 5578 5663 -458 183 162 0 0 chrX 102041815 102041852 -60558078 + (TA)n Simple_repeat Simple_repeat 1 37 0 1507 186 41 17 chrX 102041987 102042277 -60557653 + AluJo SINE Alu 1 297 -15 404 106 0 30 chrX 102043462 102043548 -60556382 + L1PA10 LINE L1 6089 6168 0 225 256 0 0 chrX 102043556 102043599 -60556331 + (TG)n Simple_repeat Simple_repeat 1 43 0 1349 179 0 0 chrX 102044073 102044297 -60555633 - AluJb SINE Alu -4 308 85 700 180 0 50 chrX 102044340 102044479 -60555451 + FLAM_A SINE Alu 1 132 -1 2189 117 20 0 chrX 102044479 102044777 -60555153 + AluJb SINE Alu 1 304 -8 234 205 0 0 chrX 102045041 102045080 -60554850 + Alu SINE Alu 131 169 -133 1996 153 0 0 chrX 102045154 102045455 -60554475 + AluJb SINE Alu 2 302 -10 397 306 6 2 chrX 102045953 102046126 -60553804 + MIR SINE MIR 47 260 -2 234 325 0 12 chrX 102046346 102046429 -60553501 + GA-rich Low_complexity Low_complexity 2 83 0 360 303 17 17 chrX 102048893 102049012 -60550918 + MIR3 SINE MIR 66 184 -24 1400 186 87 25 chrX 102049532 102049807 -60550123 - AluJo SINE Alu -20 292 1 803 207 61 6 chrX 102050620 102050737 -60549193 + AluJo SINE Alu 1 131 -181 209 57 29 0 chrX 102050737 102050772 -60549158 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 803 207 61 6 chrX 102050772 102050818 -60549112 + AluJo SINE Alu 131 173 -139 185 0 0 39 chrX 102050924 102050950 -60548980 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1806 182 0 7 chrX 102050953 102051261 -60548669 - AluJb SINE Alu -6 306 1 2191 95 0 7 chrX 102051881 102052177 -60547753 + AluSq SINE Alu 1 294 -19 1890 129 24 17 chrX 102052875 102053170 -60546760 + AluJo SINE Alu 1 297 -15 23 0 0 0 chrX 102055805 102055828 -60544102 + AT_rich Low_complexity Low_complexity 1 23 0 220 183 0 56 chrX 102055999 102056070 -60543860 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 1850 92 48 0 chrX 102056472 102056723 -60543207 + AluSx SINE Alu 30 292 -20 249 242 0 0 chrX 102056724 102056786 -60543144 + LTR66 LTR ERVL 412 473 -137 893 155 22 33 chrX 102057362 102057543 -60542387 + MER96B DNA MER1_type? 1 179 -238 200 255 0 0 chrX 102058863 102058910 -60541020 + (CGGG)n Simple_repeat Simple_repeat 2 48 0 949 117 21 14 chrX 102059796 102059941 -60539989 + AluJb SINE Alu 158 303 -9 2488 21 43 0 chrX 102060036 102060318 -60539612 - AluY SINE Alu -17 294 1 1110 130 146 61 chrX 102060793 102060962 -60538968 + ORSL DNA AcHobo 1 199 -76 1365 185 44 27 chrX 102060962 102061260 -60538670 - AluJo SINE Alu -9 303 1 1110 130 146 61 chrX 102061260 102061337 -60538593 + ORSL DNA AcHobo 199 268 -7 385 260 16 39 chrX 102061611 102061738 -60538192 + MER113 DNA MER1_type? 1 124 -397 669 251 75 10 chrX 102061822 102062021 -60537909 + MIR SINE MIR 3 214 -48 549 242 91 15 chrX 102062029 102062227 -60537703 - MIR SINE MIR -2 260 48 3875 192 17 9 chrX 102062295 102063036 -60536894 - L1MB7 LINE L1 -59 6125 5376 2339 88 27 0 chrX 102063036 102063330 -60536600 - AluSq SINE Alu -11 302 1 3875 192 17 9 chrX 102063330 102063350 -60536580 - L1MB7 LINE L1 -808 5376 5358 2400 90 0 3 chrX 102063594 102063895 -60536035 - AluSg SINE Alu -10 300 1 2074 137 3 3 chrX 102064279 102064579 -60535351 - AluSq SINE Alu -13 300 1 1891 147 0 26 chrX 102064742 102065048 -60534882 - AluJo SINE Alu -14 298 1 475 91 0 0 chrX 102066404 102066470 -60533460 - MER41B LTR ERV1 -88 547 482 1719 152 0 55 chrX 102066634 102066943 -60532987 - AluJo SINE Alu -20 292 1 25 0 0 0 chrX 102066943 102066968 -60532962 + AT_rich Low_complexity Low_complexity 1 25 0 233 302 10 0 chrX 102066975 102067071 -60532859 - L1ME4a LINE L1 -1 6120 6024 2441 88 0 0 chrX 102067212 102067506 -60532424 + AluSx SINE Alu 1 294 -18 229 175 0 0 chrX 102067529 102067569 -60532361 - Alu SINE Alu -88 78 39 2054 128 3 0 chrX 102068030 102068313 -60531617 + AluSx SINE Alu 1 287 -25 357 102 0 0 chrX 102068313 102068372 -60531558 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1135 130 34 0 chrX 102068397 102068574 -60531356 + MER20 DNA MER1_type 35 217 -2 482 229 24 59 chrX 102068576 102068746 -60531184 + L1MD3 LINE L1 7822 7985 -10 198 0 0 0 chrX 102068765 102068787 -60531143 + (CTA)n Simple_repeat Simple_repeat 1 22 0 2020 127 0 3 chrX 102068857 102069140 -60530790 + AluSx SINE Alu 3 284 -28 25 0 0 0 chrX 102069140 102069165 -60530765 + AT_rich Low_complexity Low_complexity 1 25 0 653 110 43 0 chrX 102069172 102069335 -60530595 + (TA)n Simple_repeat Simple_repeat 2 171 0 1121 107 0 19 chrX 102069406 102069565 -60530365 - AluSg/x SINE Alu -31 279 124 309 51 0 0 chrX 102069589 102069628 -60530302 + (TG)n Simple_repeat Simple_repeat 2 40 0 3089 169 95 33 chrX 102069628 102070354 -60529576 - L1MD2 LINE L1 -226 6133 5359 2011 121 0 39 chrX 102070354 102070661 -60529269 - AluSx SINE Alu -17 295 1 809 256 60 47 chrX 102070689 102071075 -60528855 - L2 LINE L2 -664 2650 2260 1575 189 6 19 chrX 102071173 102071486 -60528444 + AluJb SINE Alu 1 309 -3 1464 183 28 12 chrX 102072005 102072257 -60527673 - AluJb SINE Alu -56 256 1 974 138 0 0 chrX 102072287 102072425 -60527505 + AluSq/x SINE Alu 1 138 -174 2042 132 0 0 chrX 102072925 102073231 -60526699 + AluSx SINE Alu 1 306 0 1896 140 18 0 chrX 102073503 102073831 -60526099 + L1MA4 LINE L1 5966 6299 -1 27 29 0 0 chrX 102074961 102074995 -60524935 + AT_rich Low_complexity Low_complexity 1 34 0 2900 187 21 18 chrX 102075082 102075703 -60524227 - L1MC3 LINE L1 -5 8037 7426 901 147 0 27 chrX 102076272 102076446 -60523484 - AluJo/FRAM SINE Alu 0 306 137 1373 104 158 138 chrX 102076446 102076744 -60523186 - AluSg SINE Alu -6 304 1 1799 154 24 17 chrX 102076822 102077114 -60522816 - AluJo SINE Alu -18 294 1 1044 222 44 52 chrX 102077257 102077617 -60522313 + MLT2C1 LTR ERVL 1 426 -38 750 154 14 42 chrX 102077705 102077848 -60522082 + AluJo SINE Alu 7 145 -167 2349 95 0 0 chrX 102077848 102078144 -60521786 + AluSx SINE Alu 1 296 -16 470 332 23 0 chrX 102078188 102078447 -60521483 - L1ME3A LINE L1 -284 5886 5622 1397 208 35 28 chrX 102078566 102078855 -60521075 - MLT1D LTR MaLR 0 505 215 189 0 0 0 chrX 102078862 102078883 -60521047 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 32 26 0 0 chrX 102079427 102079466 -60520464 + AT_rich Low_complexity Low_complexity 1 39 0 198 259 37 0 chrX 102079467 102079521 -60520409 - L2 LINE L2 -1 3312 3257 263 277 85 28 chrX 102079683 102079824 -60520106 + L2 LINE L2 2492 2640 -674 * 316 272 97 10 chrX 102079820 102079923 -60520007 + L2 LINE L2 3186 3297 -16 1987 126 0 17 chrX 102079936 102080230 -60519700 - AluJb SINE Alu -23 289 1 1637 174 0 65 chrX 102080244 102080583 -60519347 - AluJb SINE Alu 0 319 1 504 300 100 30 chrX 102080820 102081232 -60518698 - L2 LINE L2 -85 3228 2749 467 286 106 13 chrX 102081240 102081499 -60518431 + L2 LINE L2 2753 3035 -278 1850 149 7 7 chrX 102081503 102081791 -60518139 + AluJo SINE Alu 1 288 -24 1333 219 61 49 chrX 102081807 102082217 -60517713 - MLT1C LTR MaLR 0 467 53 711 235 16 27 chrX 102082302 102082489 -60517441 + L2 LINE L2 3124 3308 -5 2249 106 7 0 chrX 102083296 102083599 -60516331 - AluSq SINE Alu -6 307 3 1639 200 3 3 chrX 102083681 102083986 -60515944 + AluJo SINE Alu 1 305 -7 1746 176 13 19 chrX 102084470 102084783 -60515147 - AluJo SINE Alu -1 311 1 1984 139 20 0 chrX 102084801 102085102 -60514828 - AluJb SINE Alu -1 311 5 523 295 76 0 chrX 102086303 102086513 -60513417 - MIR SINE MIR -35 227 2 2399 106 0 0 chrX 102086695 102086997 -60512933 + AluSx SINE Alu 1 302 -10 321 228 0 0 chrX 102087237 102087316 -60512614 - MIR SINE MIR 0 262 184 721 181 19 31 chrX 102087316 102087476 -60512454 - FRAM SINE Alu 0 40 1 186 263 71 126 chrX 102087503 102087581 -60512349 + L2 LINE L2 2461 2542 -772 2473 90 3 0 chrX 102087581 102087892 -60512038 - AluSq SINE Alu -1 312 1 186 263 71 126 chrX 102087892 102088068 -60511862 + L2 LINE L2 2542 2701 -613 1550 171 7 43 chrX 102089787 102090086 -60509844 + AluJb SINE Alu 1 288 -24 181 278 170 88 chrX 102090129 102090323 -60509607 - L2 LINE L2 -195 3077 2868 562 176 10 0 chrX 102090329 102090431 -60509499 + MER58B DNA MER1_type 168 270 -71 437 125 34 68 chrX 102090441 102090529 -60509401 + MER58B DNA MER1_type 248 332 -9 1322 123 0 0 chrX 102090529 102090716 -60509214 + AluSg/x SINE Alu 125 311 -1 640 272 123 24 chrX 102091033 102091775 -60508155 - L1ME LINE L1 -367 5754 4939 3971 163 113 20 chrX 102091888 102092678 -60507252 + MER21B LTR ERV1 1 863 0 5319 196 75 44 chrX 102092685 102093784 -60506146 + MER21B-int LTR ERV1 2 1138 -3053 2389 71 10 0 chrX 102093784 102094079 -60505851 - AluSx SINE Alu -14 298 1 5319 196 75 44 chrX 102094079 102094229 -60505701 + MER21B-int LTR ERV1 1138 1282 -2909 1581 134 4 4 chrX 102094230 102094462 -60505468 + AluJb SINE Alu 1 232 -80 10140 160 75 27 chrX 102094500 102095402 -60504528 + MER21B-int LTR ERV1 2160 3018 -1173 2186 107 30 0 chrX 102095402 102095525 -60504405 + AluSp SINE Alu 1 119 -194 257 67 0 22 chrX 102095525 102095570 -60504360 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2186 107 30 0 chrX 102095570 102095745 -60504185 + AluSp SINE Alu 119 308 -5 10140 160 75 27 chrX 102095745 102096732 -60503198 + MER21B-int LTR ERV1 3018 4139 -52 918 205 30 0 chrX 102096812 102096978 -60502952 + MER21B LTR ERV1 1 171 -692 2067 122 0 0 chrX 102097401 102097679 -60502251 - AluSx SINE Alu -19 293 16 448 314 20 0 chrX 102097681 102097834 -60502096 - MIR SINE MIR -35 227 72 259 263 42 21 chrX 102098251 102098346 -60501584 + L1MC/D LINE L1 5679 5775 -389 1716 85 18 9 chrX 102098390 102098614 -60501316 - AluSg/x SINE Alu -2 308 83 2265 112 0 0 chrX 102098742 102099038 -60500892 + AluSx SINE Alu 1 296 -16 1698 188 197 36 chrX 102099853 102099956 -60499974 + MLT1F1 LTR MaLR 1 86 -481 2167 144 0 0 chrX 102099956 102100262 -60499668 - AluSx SINE Alu -6 306 1 1698 188 197 36 chrX 102100262 102100631 -60499299 + MLT1F1 LTR MaLR 86 549 -18 270 0 0 0 chrX 102101933 102101963 -60497967 + (T)n Simple_repeat Simple_repeat 1 30 0 810 286 114 52 chrX 102102424 102102844 -60497086 + MLT1J2 LTR MaLR 1 450 0 510 252 0 35 chrX 102102998 102103141 -60496789 - L2 LINE L2 0 3313 3176 233 275 53 61 chrX 102103190 102103321 -60496609 + MER5A DNA MER1_type 2 131 -58 248 281 88 66 chrX 102103335 102103563 -60496367 - L2 LINE L2 -780 2534 2302 199 250 0 0 chrX 102103650 102103690 -60496240 - L2 LINE L2 -85 3187 3148 22 0 0 0 chrX 102103795 102103817 -60496113 + AT_rich Low_complexity Low_complexity 1 22 0 404 311 99 18 chrX 102104658 102104880 -60495050 - MIR SINE MIR -6 256 17 2156 80 0 0 chrX 102105193 102105457 -60494473 - AluSg1 SINE Alu -18 291 28 189 147 0 0 chrX 102105563 102105597 -60494333 + (TG)n Simple_repeat Simple_repeat 1 34 0 523 301 56 26 chrX 102106496 102106765 -60493165 + L2 LINE L2 2554 2830 -484 2264 99 0 3 chrX 102106784 102107110 -60492820 - AluSx SINE Alu 0 325 1 180 292 0 0 chrX 102107670 102107718 -60492212 - MIR SINE MIR -110 152 105 2331 122 0 0 chrX 102107783 102108095 -60491835 - AluSx SINE Alu 0 312 1 1135 154 0 6 chrX 102108095 102108270 -60491660 - AluJb SINE Alu -4 308 135 321 82 0 0 chrX 102108584 102108633 -60491297 + (GA)n Simple_repeat Simple_repeat 2 50 0 804 239 0 0 chrX 102109289 102109477 -60490453 + MER5A DNA MER1_type 2 189 0 472 299 115 9 chrX 102109740 102109957 -60489973 + MIR SINE MIR 3 242 -20 186 250 0 0 chrX 102110145 102110193 -60489737 + MIR SINE MIR 5 52 -210 2211 110 0 0 chrX 102110201 102110492 -60489438 - AluSx SINE Alu -21 291 1 655 228 90 0 chrX 102110521 102110688 -60489242 + MIR SINE MIR 50 231 -31 500 280 19 13 chrX 102111384 102111541 -60488389 + MIR3 SINE MIR 30 187 -21 248 200 55 0 chrX 102111553 102111608 -60488322 - MIR SINE MIR -2 260 203 1186 148 42 25 chrX 102111611 102111848 -60488082 + Tigger2a DNA MER2_type 2 242 -192 413 0 39 0 chrX 102111848 102111900 -60488030 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 1328 120 29 45 chrX 102111900 102111917 -60488013 + Tigger2a DNA MER2_type 196 212 -2506 1850 148 16 23 chrX 102111917 102112221 -60487709 - AluJo SINE Alu -10 302 1 1328 120 29 45 chrX 102112221 102112281 -60487649 + Tigger2a DNA MER2_type 212 271 -2447 2196 126 0 0 chrX 102112281 102112583 -60487347 + AluSx SINE Alu 1 302 -10 1328 120 29 45 chrX 102112583 102112746 -60487184 + Tigger2a DNA MER2_type 271 433 -11 238 236 18 0 chrX 102113343 102113398 -60486532 - MIR SINE MIR -192 70 15 678 300 29 12 chrX 102113447 102113690 -60486240 + MIR SINE MIR 3 249 -13 236 191 0 0 chrX 102114083 102114130 -60485800 + (TG)n Simple_repeat Simple_repeat 1 47 0 414 57 0 0 chrX 102114407 102114460 -60485470 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 189 0 0 0 chrX 102114736 102114757 -60485173 + (T)n Simple_repeat Simple_repeat 1 21 0 2299 122 0 0 chrX 102115088 102115449 -60484481 - AluSx SINE Alu 0 361 1 1395 116 10 24 chrX 102115463 102115670 -60484260 - AluSg/x SINE Alu -12 300 97 1592 115 0 0 chrX 102115673 102115882 -60484048 - AluSx SINE Alu -103 209 1 747 220 59 5 chrX 102116037 102116223 -60483707 - MIR SINE MIR 0 262 67 617 163 81 81 chrX 102116579 102116751 -60483179 + MLT1B LTR MaLR 1 172 -218 269 265 13 19 chrX 102116771 102116931 -60482999 + CT-rich Low_complexity Low_complexity 1 159 0 644 204 7 42 chrX 102116940 102117082 -60482848 + MLT1B LTR MaLR 192 328 -62 1354 146 5 5 chrX 102117088 102117293 -60482637 - AluJo SINE Alu -107 205 1 1241 187 44 40 chrX 102117296 102117429 -60482501 - AluJb SINE Alu -38 274 143 1897 95 125 0 chrX 102117429 102117693 -60482237 - AluSx SINE Alu -15 297 1 1241 187 44 40 chrX 102117693 102117832 -60482098 - AluJb SINE Alu -169 143 1 2458 90 0 0 chrX 102117850 102118162 -60481768 - AluSx SINE Alu 0 312 1 1166 184 133 29 chrX 102118660 102118969 -60480961 - MER58B DNA MER1_type 0 341 1 559 220 151 13 chrX 102118985 102119144 -60480786 + MER5A DNA MER1_type 9 189 0 2288 110 0 22 chrX 102119689 102120007 -60479923 - AluSx SINE Alu -1 311 1 2247 123 0 0 chrX 102120807 102121116 -60478814 - AluSx SINE Alu -3 309 1 726 241 123 18 chrX 102121258 102121478 -60478452 - MIR SINE MIR 0 262 20 525 159 0 58 chrX 102121510 102121585 -60478345 - L1MA7 LINE L1 0 6291 6226 1889 145 122 18 chrX 102121585 102121971 -60477959 - MSTB LTR MaLR 0 426 1 525 159 0 58 chrX 102121971 102122033 -60477897 - L1MA7 LINE L1 -65 6226 6162 827 173 53 1 chrX 102122035 102122202 -60477728 - L1MA7 LINE L1 -151 6003 5875 866 244 15 48 chrX 102122230 102122500 -60477430 - MIR SINE MIR 0 262 2 486 247 130 7 chrX 102122584 102122738 -60477192 - Charlie8 DNA MER1_type -2192 225 53 1817 154 0 49 chrX 102122899 102123224 -60476706 + AluJo SINE Alu 4 312 0 264 242 106 15 chrX 102123531 102123597 -60476333 - Charlie8 DNA MER1_type -2345 72 1 257 279 0 0 chrX 102123930 102123991 -60475939 + MER5B DNA MER1_type 1 61 -117 448 212 23 45 chrX 102124025 102124157 -60475773 - MER5B DNA MER1_type -44 134 6 2253 122 0 10 chrX 102124333 102124645 -60475285 - AluSx SINE Alu -1 311 3 1746 234 92 55 chrX 102124731 102125296 -60474634 + MLT1E LTR MaLR 1 586 -7 512 269 16 21 chrX 102125342 102125528 -60474402 - MER5A DNA MER1_type -1 188 4 2192 98 14 0 chrX 102125702 102125987 -60473943 + AluSg SINE Alu 1 289 -21 206 81 27 0 chrX 102125987 102126024 -60473906 + (TA)n Simple_repeat Simple_repeat 2 39 0 1697 176 7 7 chrX 102126028 102126306 -60473624 - AluJo SINE Alu -30 282 5 361 177 16 0 chrX 102126594 102126656 -60473274 + MER5A DNA MER1_type 1 63 -126 2194 128 0 0 chrX 102127469 102127766 -60472164 - AluSg SINE Alu -13 297 1 404 250 62 0 chrX 102128112 102128240 -60471690 + L2 LINE L2 560 695 -2619 1156 306 163 35 chrX 102128530 102129456 -60470474 + L2 LINE L2 632 1721 -1593 2023 131 3 22 chrX 102129456 102129638 -60470292 - AluSx SINE Alu 0 312 137 2293 107 3 0 chrX 102129638 102129936 -60469994 - AluSq SINE Alu -14 299 1 2023 131 3 22 chrX 102129936 102130067 -60469863 - AluSx SINE Alu -175 137 5 1156 306 163 35 chrX 102130067 102130233 -60469697 + L2 LINE L2 1721 1864 -1450 441 272 18 26 chrX 102130318 102130432 -60469498 - MIR SINE MIR -126 136 24 242 258 21 82 chrX 102130520 102130617 -60469313 + L2 LINE L2 3181 3271 -1 208 304 0 14 chrX 102130633 102130702 -60469228 - L3b LINE CR1 -247 1336 1269 381 173 356 10 chrX 102130703 102130807 -60469123 - MIR3 SINE MIR -1 207 68 1751 178 31 67 chrX 102131489 102131877 -60468053 - MLT1A2 LTR MaLR 0 374 1 1839 143 52 0 chrX 102131908 102132194 -60467736 - AluSx SINE Alu -11 301 1 801 151 0 43 chrX 102132196 102132335 -60467595 - AluJo/FLAM SINE Alu -179 133 1 1988 153 0 3 chrX 102132378 102132685 -60467245 + AluJo SINE Alu 1 306 -6 27 49 0 0 chrX 102132843 102132884 -60467046 + AT_rich Low_complexity Low_complexity 1 41 0 813 333 50 28 chrX 102133065 102133428 -60466502 - MER115 DNA AcHobo -137 556 186 532 246 31 68 chrX 102133440 102133631 -60466299 + MIR SINE MIR 49 232 -30 264 333 9 38 chrX 102133599 102133704 -60466226 + MIR SINE MIR 46 147 -115 * 743 261 169 52 chrX 102133716 102134194 -60465736 - MLT1H LTR MaLR -15 534 1 200 385 52 0 chrX 102134198 102134294 -60465636 + MIR SINE MIR 150 250 -12 265 253 11 0 chrX 102134420 102134511 -60465419 + A-rich Low_complexity Low_complexity 3 94 0 701 204 0 0 chrX 102134903 102135045 -60464885 - Charlie1 DNA MER1_type 0 2761 2620 * 1196 215 12 24 chrX 102135025 102135271 -60464659 - Charlie1 DNA MER1_type -2518 243 1 340 180 171 27 chrX 102135354 102135465 -60464465 + MIR SINE MIR 120 246 -16 203 281 260 0 chrX 102135533 102135629 -60464301 - L3 LINE CR1 -140 1437 1317 775 244 151 39 chrX 102135760 102136071 -60463859 - L2 LINE L2 -3 3310 2965 5036 277 155 27 chrX 102136080 102136504 -60463426 - L2 LINE L2 -534 2780 2411 2028 119 3 11 chrX 102136504 102136840 -60463090 + AluSx SINE Alu 1 334 0 5036 277 155 27 chrX 102136840 102138825 -60461105 - L2 LINE L2 -903 2411 63 451 266 111 20 chrX 102139188 102139387 -60460543 - L1MC4 LINE L1 -2 8040 7824 975 272 200 23 chrX 102139409 102139799 -60460131 - L3 LINE CR1 -461 1116 658 448 303 75 15 chrX 102140470 102140697 -60459233 + MIR SINE MIR 20 261 -1 1710 154 7 18 chrX 102140895 102141181 -60458749 + AluJb SINE Alu 1 283 -29 5314 204 116 48 chrX 102141711 102142977 -60456953 - L1MC4a LINE L1 -2 7806 6393 282 73 0 0 chrX 102142977 102143018 -60456912 + (TA)n Simple_repeat Simple_repeat 1 41 0 5314 204 116 48 chrX 102143018 102143454 -60456476 - L1MC4a LINE L1 -1415 6393 5988 620 242 38 0 chrX 102143481 102143638 -60456292 - L1MC4a LINE L1 -448 5794 5632 2296 116 3 0 chrX 102143712 102144023 -60455907 + AluSx SINE Alu 1 312 0 220 185 0 37 chrX 102144785 102144839 -60455091 + L2 LINE L2 3262 3313 0 1057 232 14 28 chrX 102145146 102145431 -60454499 - L2 LINE L2 -536 2778 2498 243 88 0 0 chrX 102146847 102146881 -60453049 + MARNA DNA Mariner 182 215 -371 883 152 119 0 chrX 102146881 102146992 -60452938 + AluJ SINE Alu 1 136 -176 243 0 0 0 chrX 102146992 102147019 -60452911 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 883 152 119 0 chrX 102147019 102147058 -60452872 + AluJ SINE Alu 136 169 -143 1184 187 162 78 chrX 102147058 102147561 -60452369 - MER66A LTR ERV1 0 478 97 852 133 74 0 chrX 102147561 102147696 -60452234 + AluJ SINE Alu 166 310 -2 970 299 54 68 chrX 102147807 102148571 -60451359 - L2 LINE L2 -1 3312 2309 438 352 132 15 chrX 102148692 102149019 -60450911 + L2 LINE L2 2260 2624 -690 * 645 296 25 114 chrX 102149017 102149385 -60450545 + L2 LINE L2 2938 3272 0 1921 151 24 0 chrX 102150721 102151019 -60448911 + AluJb SINE Alu 2 306 -6 763 114 0 15 chrX 102151019 102151151 -60448779 + (GGAA)n Simple_repeat Simple_repeat 1 130 0 205 306 42 0 chrX 102151246 102151318 -60448612 - MIR SINE MIR -118 144 70 205 254 15 30 chrX 102151365 102151432 -60448498 - MIR SINE MIR -155 107 42 628 224 0 8 chrX 102151600 102151734 -60448196 - MER94 DNA DNA -1 133 1 180 0 0 0 chrX 102152266 102152286 -60447644 + (CATTA)n Simple_repeat Simple_repeat 3 22 0 2267 96 0 3 chrX 102152500 102152801 -60447129 - AluSq SINE Alu -9 304 5 234 0 0 0 chrX 102153027 102153053 -60446877 + (TG)n Simple_repeat Simple_repeat 1 26 0 1709 160 0 52 chrX 102153169 102153475 -60446455 - AluJb SINE Alu -22 290 1 597 264 20 56 chrX 102154030 102154280 -60445650 + L2 LINE L2 3073 3313 0 271 188 0 0 chrX 102154296 102154341 -60445589 - MIR3 SINE MIR -11 197 153 874 236 48 26 chrX 102154341 102154570 -60445360 + MIR SINE MIR 2 235 -27 1061 243 168 22 chrX 102154574 102155037 -60444893 - LTR33A LTR ERVL 0 523 35 422 355 64 69 chrX 102156259 102156681 -60443249 - L2 LINE L2 -16 3256 2837 1098 238 110 88 chrX 102157010 102157328 -60442602 - L1ME4a LINE L1 -3 6118 5809 1866 163 7 3 chrX 102157328 102157629 -60442301 - AluJb SINE Alu -10 302 1 1098 238 110 88 chrX 102157629 102158143 -60441787 - L1ME4a LINE L1 -312 5809 5267 1315 181 96 48 chrX 102158400 102158692 -60441238 - AluJo SINE Alu -6 306 1 380 274 34 8 chrX 102158990 102159107 -60440823 - L1ME4a LINE L1 -1453 4693 4574 252 200 0 0 chrX 102159678 102159733 -60440197 + (CA)n Simple_repeat Simple_repeat 2 56 0 993 198 21 143 chrX 102160248 102160546 -60439384 + L1MB7 LINE L1 5848 6090 -94 1307 174 94 11 chrX 102160546 102160811 -60439119 + AluJb SINE Alu 1 287 -25 993 198 21 143 chrX 102160811 102160896 -60439034 + L1MB7 LINE L1 6090 6184 0 416 293 50 7 chrX 102160950 102161090 -60438840 + MIR SINE MIR 90 235 -27 3913 144 17 5 chrX 102161477 102162073 -60437857 - LTR26 LTR ERV1 0 603 1 640 289 37 5 chrX 102163586 102163773 -60436157 - MIR SINE MIR -68 194 2 330 245 128 80 chrX 102163933 102164182 -60435748 - MLT1H LTR MaLR -288 261 1 42869 60 3 3 chrX 102164210 102170358 -60429572 - L1PA5 LINE L1 0 6154 11 459 358 120 22 chrX 102170366 102170732 -60429198 + L2 LINE L2 2871 3272 0 1512 158 32 4 chrX 102172216 102172469 -60427461 - AluJo SINE Alu -52 260 1 998 257 70 75 chrX 102172717 102172882 -60427048 - L1MC4a LINE L1 -1800 6008 5844 897 128 0 0 chrX 102172882 102172999 -60426931 + FLAM_C SINE Alu 2 118 -15 998 257 70 75 chrX 102172999 102173542 -60426388 - L1MC4a LINE L1 -1964 5844 5303 1167 166 25 4 chrX 102174062 102174294 -60425636 - MER33 DNA MER1_type -255 69 1 2372 84 0 0 chrX 102174312 102174609 -60425321 - AluY SINE Alu -14 297 1 1304 282 72 53 chrX 102174732 102175470 -60424460 - HAL1 LINE L1 -1310 1197 446 734 306 20 49 chrX 102175491 102175837 -60424093 - HAL1 LINE L1 -2170 337 2 189 244 0 0 chrX 102176073 102176118 -60423812 - MIR3 SINE MIR -5 203 159 240 206 93 10 chrX 102176187 102176284 -60423646 - MER103 DNA DNA -2 164 60 237 298 75 11 chrX 102176477 102176571 -60423359 + L1ME LINE L1 267 366 -5753 2210 272 79 42 chrX 102176585 102176968 -60422962 + L1ME LINE L1 3442 3809 -2320 2116 118 47 0 chrX 102176968 102177265 -60422665 + AluSx SINE Alu 1 311 -1 2210 272 79 42 chrX 102177265 102177466 -60422464 + L1ME LINE L1 3809 4001 -2128 1305 219 19 32 chrX 102177466 102177777 -60422153 - AluJb SINE Alu -5 307 1 2210 272 79 42 chrX 102177777 102178357 -60421573 + L1ME LINE L1 4001 4650 -1479 1956 159 0 6 chrX 102178505 102178819 -60421111 - AluJb SINE Alu 0 312 1 273 304 0 0 chrX 102178916 102178995 -60420935 - L1ME1 LINE L1 -148 6018 5940 332 255 133 0 chrX 102179004 102179102 -60420828 + L1ME LINE L1 5545 5655 -498 279 245 11 32 chrX 102179201 102179295 -60420635 + T-rich Low_complexity Low_complexity 2 93 0 368 152 91 0 chrX 102179788 102179854 -60420076 + Tigger2 DNA MER2_type 1 72 -2646 * 1555 70 74 4 chrX 102179849 102180047 -60419883 + Tigger2 DNA MER2_type 2280 2498 -220 2050 123 9 25 chrX 102180047 102180364 -60419566 - AluSx SINE Alu 0 312 1 1555 70 74 4 chrX 102180364 102180395 -60419535 + Tigger2 DNA MER2_type 2498 2525 -193 244 283 211 24 chrX 102180433 102180684 -60419246 + L2 LINE L2 1975 2272 -1042 521 249 5 78 chrX 102180895 102181088 -60418842 + MIR SINE MIR 84 262 0 1661 218 30 0 chrX 102181264 102181595 -60418335 - MER58B DNA MER1_type 0 341 1 518 279 8 0 chrX 102181971 102182100 -60417830 - L2 LINE L2 -5 3308 3179 1574 291 45 45 chrX 102182184 102183094 -60416836 + L2 LINE L2 2292 3214 -99 349 226 0 24 chrX 102183103 102183187 -60416743 - L2 LINE L2 -950 2364 2283 2031 134 0 29 chrX 102183387 102183700 -60416230 - AluSx SINE Alu -8 304 1 2107 138 0 0 chrX 102185752 102186049 -60413881 - AluSx SINE Alu -15 297 1 1129 175 168 35 chrX 102186159 102186445 -60413485 - MLT2B1 LTR ERVL -5 515 192 234 254 14 0 chrX 102186499 102186570 -60413360 + CT-rich Low_complexity Low_complexity 2 73 0 1626 216 60 76 chrX 102186770 102187283 -60412647 - MLT1D LTR MaLR 0 505 1 328 157 108 24 chrX 102187437 102187520 -60412410 + MER3 DNA MER1_type 82 124 -85 484 200 31 39 chrX 102187846 102187976 -60411954 + MIR SINE MIR 131 259 -3 480 313 92 21 chrX 102187997 102188056 -60411874 + MIR SINE MIR 6 59 -203 2292 99 3 0 chrX 102188056 102188358 -60411572 - AluSg SINE Alu -7 303 1 480 313 92 21 chrX 102188358 102188538 -60411392 + MIR SINE MIR 59 262 0 1481 322 54 50 chrX 102189085 102189258 -60410672 - L2 LINE L2 -831 2483 2312 601 273 190 0 chrX 102189258 102189474 -60410456 - MIR SINE MIR -3 259 3 1481 322 54 50 chrX 102189474 102189856 -60410074 - L2 LINE L2 -1002 2312 1933 2138 125 0 0 chrX 102189856 102190152 -60409778 + AluSx SINE Alu 1 296 -16 1481 322 54 50 chrX 102190152 102190736 -60409194 - L2 LINE L2 -1381 1933 1338 1568 191 13 16 chrX 102190980 102191284 -60408646 - AluJo SINE Alu -9 303 1 2204 113 7 0 chrX 102191458 102191750 -60408180 - AluSq SINE Alu -19 294 1 454 243 98 69 chrX 102192031 102192094 -60407836 - MER5B DNA MER1_type 0 178 118 2470 32 0 0 chrX 102192094 102192371 -60407559 + AluY SINE Alu 17 293 -18 454 243 98 69 chrX 102192371 102192480 -60407450 - MER5B DNA MER1_type -60 118 1 2090 118 10 3 chrX 102193581 102193887 -60406043 - AluSx SINE Alu -4 308 1 235 279 16 0 chrX 102194198 102194259 -60405671 - MIR3 SINE MIR -52 156 95 2183 290 76 27 chrX 102196799 102198056 -60401874 - L2 LINE L2 -1 3312 1988 1067 245 119 72 chrX 102198056 102198628 -60401302 + MLT1G LTR MaLR 8 590 0 685 301 77 10 chrX 102198630 102198942 -60400988 - L2 LINE L2 -1368 1946 1614 181 291 0 18 chrX 102198956 102199011 -60400919 + L2 LINE L2 2594 2647 -667 189 200 111 0 chrX 102199157 102199202 -60400728 - MIR3 SINE MIR -22 186 137 2647 259 59 12 chrX 102199267 102199930 -60400000 - Zaphod DNA AcHobo -3337 694 1 231 318 45 0 chrX 102200033 102200121 -60399809 + L2 LINE L2 2555 2646 -668 245 105 0 0 chrX 102200185 102200223 -60399707 + Charlie7 DNA MER1_type 64 101 -2511 229 235 44 59 chrX 102200207 102200343 -60399587 + Charlie7 DNA MER1_type 2427 2560 -52 * 899 251 46 0 chrX 102201362 102201601 -60398329 - MIR SINE MIR 0 262 13 195 290 41 76 chrX 102201732 102201877 -60398053 + L2 LINE L2 2931 3070 -202 280 322 78 28 chrX 102202612 102202792 -60397138 + L2 LINE L2 3114 3302 -11 2264 102 0 0 chrX 102202792 102203085 -60396845 + AluSc SINE Alu 1 293 -16 1545 171 6 75 chrX 102203295 102203617 -60396313 + AluJb SINE Alu 1 300 -2 308 280 122 0 chrX 102203874 102203981 -60395949 - MIR SINE MIR -110 152 33 199 276 152 29 chrX 102203938 102204043 -60395887 + MIR3 SINE MIR 37 154 -54 * 2184 196 75 105 chrX 102204172 102204412 -60395518 - L1ME1 LINE L1 -54 6112 5866 298 79 0 0 chrX 102204412 102204450 -60395480 + Charlie4 DNA MER1_type 151 188 -1773 3119 48 24 0 chrX 102204451 102204822 -60395108 - L1PA7 LINE L1 0 6154 5775 2184 196 75 105 chrX 102204822 102204837 -60395093 - L1ME1 LINE L1 -300 5866 5852 2093 105 0 0 chrX 102204837 102205103 -60394827 - AluSx SINE Alu -46 266 1 2184 196 75 105 chrX 102205103 102205338 -60394592 - L1ME1 LINE L1 -314 5852 5611 1932 171 0 3 chrX 102205338 102205631 -60394299 - AluJb SINE Alu -20 292 1 2184 196 75 105 chrX 102205631 102205985 -60393945 - L1ME1 LINE L1 -555 5611 5254 1459 241 45 9 chrX 102205997 102206333 -60393597 - MLT1E2 LTR MaLR 0 626 279 3689 219 35 21 chrX 102206333 102207133 -60392797 - L1ME1 LINE L1 -1227 4919 4101 2868 67 11 3 chrX 102207133 102207494 -60392436 - L1PA13 LINE L1 0 6163 5800 3689 219 35 21 chrX 102207494 102207687 -60392243 - L1ME1 LINE L1 -2045 4101 3912 2523 46 3 13 chrX 102207696 102208000 -60391930 - L1PA4 LINE L1 -3 6152 5852 40016 50 5 3 chrX 102208000 102212937 -60386993 - L1PA4 LINE L1 -1198 4948 3 820 269 42 11 chrX 102212942 102213228 -60386702 - L1ME1 LINE L1 -2305 3841 3547 479 243 0 29 chrX 102213225 102213361 -60386569 - L1ME1 LINE L1 -2560 3586 3455 * 244 281 61 53 chrX 102214856 102214970 -60384960 + MIR SINE MIR 29 143 -119 22531 159 34 20 chrX 102214980 102218635 -60381295 + L1M1 LINE L1 13 3613 -3952 2526 74 0 0 chrX 102218635 102218944 -60380986 + AluY SINE Alu 1 309 -2 22531 159 34 20 chrX 102218944 102219741 -60380189 + L1M1 LINE L1 3613 4397 -3168 2325 105 0 0 chrX 102219741 102220036 -60379894 + AluSc SINE Alu 1 295 -14 22531 159 34 20 chrX 102220036 102220466 -60379464 + L1M1 LINE L1 4397 4819 -2746 4635 16 0 0 chrX 102220466 102220965 -60378965 + L1PA2 LINE L1 5657 6155 0 22531 159 34 20 chrX 102220965 102220978 -60378952 + L1M1 LINE L1 4819 4830 -2735 253 0 54 0 chrX 102220978 102221015 -60378915 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 22531 159 34 20 chrX 102221015 102222830 -60377100 + L1M1 LINE L1 4830 6822 -743 255 273 154 0 chrX 102223820 102223930 -60376000 + L2 LINE L2 3137 3263 -9 387 341 83 42 chrX 102224100 102224534 -60375396 - L1MC4a LINE L1 -1752 6056 5605 428 122 200 11 chrX 102225121 102225211 -60374719 - L1MB1 LINE L1 -307 5882 5776 298 194 58 0 chrX 102225211 102225314 -60374616 + (TA)n Simple_repeat Simple_repeat 2 110 0 504 220 89 135 chrX 102225333 102225406 -60374524 + L1MA9 LINE L1 5881 5956 -335 1773 185 0 3 chrX 102225406 102225704 -60374226 + AluJo SINE Alu 1 297 -15 504 220 89 135 chrX 102225704 102226036 -60373894 + L1MA9 LINE L1 5956 6291 0 229 296 89 17 chrX 102226081 102226260 -60373670 + L1MC5 LINE L1 7607 7798 -163 537 251 86 31 chrX 102226260 102226423 -60373507 + FRAM SINE Alu 1 172 -4 184 254 119 30 chrX 102226685 102226752 -60373178 + MIR3 SINE MIR 132 204 -4 22 0 0 0 chrX 102226833 102226855 -60373075 + AT_rich Low_complexity Low_complexity 1 22 0 520 303 67 27 chrX 102227177 102227477 -60372453 - L1ME3A LINE L1 -238 5932 5621 733 254 34 11 chrX 102227524 102227701 -60372229 - L1MEd LINE L1 -5492 627 447 470 256 8 8 chrX 102227705 102227822 -60372108 - L1MEd LINE L1 -5940 179 63 488 335 18 13 chrX 102229727 102229954 -60369976 + L2 LINE L2 1727 1954 -1360 2531 159 56 49 chrX 102231657 102231723 -60368207 - MER44D DNA MER2_type -1882 605 541 252 0 0 0 chrX 102231723 102231751 -60368179 + (TA)n Simple_repeat Simple_repeat 1 28 0 2531 159 56 49 chrX 102231751 102232103 -60367827 - MER44D DNA MER2_type -1946 541 125 2296 94 3 0 chrX 102232103 102232400 -60367530 + AluSq SINE Alu 1 298 -15 2531 159 56 49 chrX 102232400 102232494 -60367436 - MER44D DNA MER2_type -2362 125 33 620 238 101 89 chrX 102232829 102233077 -60366853 - MIR SINE MIR 0 262 12 473 300 51 93 chrX 102234204 102234557 -60365373 + L2 LINE L2 2935 3272 0 939 206 109 8 chrX 102234623 102234861 -60365069 + MIR SINE MIR 1 262 0 610 292 89 17 chrX 102235628 102235864 -60364066 + MIR SINE MIR 8 260 -2 523 268 96 6 chrX 102235898 102236055 -60363875 - MIR SINE MIR -28 234 64 208 298 144 19 chrX 102236335 102236439 -60363491 + MIR SINE MIR 2 118 -144 960 229 112 0 chrX 102236439 102236653 -60363277 + Charlie1 DNA MER1_type 1 238 -2523 575 210 14 35 chrX 102236640 102236783 -60363147 + Charlie1 DNA MER1_type 2622 2761 0 * 478 287 42 0 chrX 102236783 102236926 -60363004 + MIR SINE MIR 111 259 -3 246 282 70 66 chrX 102237441 102237668 -60362262 + MIR SINE MIR 24 251 -11 523 313 26 15 chrX 102238298 102238493 -60361437 + MIR SINE MIR 65 261 -1 21 36 0 0 chrX 102239431 102239459 -60360471 + AT_rich Low_complexity Low_complexity 1 28 0 794 240 82 0 chrX 102239460 102239631 -60360299 - MIR SINE MIR -66 196 12 237 209 0 0 chrX 102240851 102240894 -60359036 + MARNA DNA Mariner 8 50 -536 1327 208 30 15 chrX 102242315 102242580 -60357350 - AluJo SINE Alu -23 289 21 488 204 21 0 chrX 102242927 102243020 -60356910 - MER58 DNA MER1_type -57 284 190 1435 150 81 75 chrX 102243020 102243354 -60356576 - MER101 LTR ERV1 0 474 139 326 143 0 63 chrX 102243385 102243448 -60356482 - MER5B DNA MER1_type -113 65 7 483 201 308 24 chrX 102243828 102243997 -60355933 + MIR SINE MIR 46 262 0 866 150 0 21 chrX 102244393 102244533 -60355397 + FLAM_C SINE Alu 5 141 -2 2489 70 0 6 chrX 102244828 102245140 -60354790 + AluY SINE Alu 1 310 -1 414 299 109 0 chrX 102245327 102245464 -60354466 + MIR3 SINE MIR 44 195 -13 275 234 62 0 chrX 102246425 102246489 -60353441 - MIR SINE MIR -103 105 38 623 224 37 43 chrX 102246565 102246726 -60353204 + MER97c DNA MER1_type? 20 179 -911 245 331 73 32 chrX 102246923 102247047 -60352883 - L2 LINE L2 -6 3307 3179 399 259 7 59 chrX 102247167 102247302 -60352628 + MIR SINE MIR 65 192 -70 300 217 43 14 chrX 102247330 102247399 -60352531 - L2 LINE L2 -2 3270 3200 947 276 19 27 chrX 102247454 102247715 -60352215 + MIR SINE MIR 4 262 0 2520 44 3 0 chrX 102248216 102248510 -60351420 - AluY SINE Alu -15 296 2 641 209 145 17 chrX 102248794 102248966 -60350964 + MER3 DNA MER1_type 2 195 -14 1725 184 34 3 chrX 102248992 102249285 -60350645 + AluJo SINE Alu 1 302 -10 404 318 61 35 chrX 102251045 102251243 -60348687 - MER115 DNA AcHobo -260 433 231 423 0 0 0 chrX 102251362 102251409 -60348521 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 587 263 146 19 chrX 102251747 102251960 -60347970 - MIR SINE MIR -21 241 2 207 287 31 78 chrX 102252594 102252723 -60347207 + L2 LINE L2 3179 3301 -12 1523 185 14 38 chrX 102253087 102253474 -60346456 + L1MB7 LINE L1 5655 6039 -145 414 250 67 55 chrX 102253485 102253616 -60346314 - MIR SINE MIR -74 188 53 621 173 7 67 chrX 102253616 102253662 -60346268 + L1MB8 LINE L1 6026 6073 -105 1981 138 0 0 chrX 102253662 102253986 -60345944 + AluSx SINE Alu 1 324 0 621 173 7 67 chrX 102253986 102254088 -60345842 + L1MB8 LINE L1 6073 6166 -12 414 250 67 55 chrX 102254088 102254120 -60345810 - MIR SINE MIR -209 53 23 286 303 0 34 chrX 102254148 102254237 -60345693 + MER5B DNA MER1_type 87 172 -6 1670 146 39 71 chrX 102254332 102254641 -60345289 - AluJb SINE Alu -13 299 1 2524 61 0 0 chrX 102255484 102255781 -60344149 + AluY SINE Alu 1 297 -14 267 79 0 0 chrX 102256247 102256285 -60343645 + (CA)n Simple_repeat Simple_repeat 1 38 0 8432 72 4 3 chrX 102256718 102258582 -60341348 + L1PA7 LINE L1 4318 6154 0 823 207 16 42 chrX 102258598 102258759 -60341171 - MER5A DNA MER1_type 0 189 32 648 189 18 0 chrX 102258759 102258870 -60341060 + MER81 DNA DNA 1 113 -1 823 207 16 42 chrX 102258870 102258901 -60341029 - MER5A DNA MER1_type -157 32 2 2046 186 122 13 chrX 102258996 102259465 -60340465 + MLT2B1 LTR ERVL 1 520 0 1940 118 0 64 chrX 102259746 102260066 -60339864 - AluSx SINE Alu 0 305 5 497 248 81 76 chrX 102260070 102260280 -60339650 + MIR SINE MIR 39 249 -13 4608 146 17 12 chrX 102260303 102261063 -60338867 + L1MA4A LINE L1 5531 6294 -9 2595 67 134 3 chrX 102261360 102261734 -60338196 + MER11A LTR ERVK 844 1266 0 637 214 0 16 chrX 102261791 102261917 -60338013 + MER20 DNA MER1_type 95 218 -1 4413 163 64 14 chrX 102262158 102263016 -60336914 - L1MB3 LINE L1 -1 6182 5282 361 344 149 27 chrX 102263820 102264041 -60335889 + MER115 DNA AcHobo 194 441 -252 2161 94 10 25 chrX 102264052 102264174 -60335756 + MER4A LTR ERV1 1 123 -541 279 0 0 0 chrX 102264174 102264205 -60335725 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2161 94 10 25 chrX 102264205 102264603 -60335327 + MER4A LTR ERV1 123 664 0 865 221 106 5 chrX 102264610 102264809 -60335121 + MER115 DNA AcHobo 470 688 -5 682 272 13 0 chrX 102264973 102265131 -60334799 + MIR SINE MIR 13 172 -90 4079 52 2 2 chrX 102265909 102266393 -60333537 - L1PA8 LINE L1 -7 6165 5682 478 328 54 11 chrX 102266696 102266882 -60333048 - MER115 DNA AcHobo -484 209 16 644 317 45 5 chrX 102267588 102267809 -60332121 - MIR SINE MIR -17 245 16 932 209 60 10 chrX 102268223 102268424 -60331506 + MIR SINE MIR 48 258 -4 198 118 0 0 chrX 102268554 102268588 -60331342 + (CA)n Simple_repeat Simple_repeat 2 35 0 2234 107 10 0 chrX 102268778 102269086 -60330844 - AluSx SINE Alu -1 311 1 216 0 0 0 chrX 102269094 102269118 -60330812 + (T)n Simple_repeat Simple_repeat 1 24 0 1026 173 0 35 chrX 102269228 102269430 -60330500 + AluJo SINE Alu 1 195 -117 352 36 0 36 chrX 102269513 102269569 -60330361 + (TTAAA)n Simple_repeat Simple_repeat 2 55 0 718 246 5 30 chrX 102270705 102270904 -60329026 - MIR SINE MIR -38 224 31 391 301 144 0 chrX 102270914 102271067 -60328863 - MIR SINE MIR -21 241 67 379 217 0 0 chrX 102271588 102271657 -60328273 + L2 LINE L2 3239 3307 -6 293 294 11 11 chrX 102271679 102271771 -60328159 - L2 LINE L2 -1738 1576 1485 419 277 92 0 chrX 102271814 102271955 -60327975 - MIR SINE MIR -48 214 61 2650 33 0 0 chrX 102271956 102272255 -60327675 - AluY SINE Alu -12 299 1 1324 340 117 15 chrX 102272338 102273287 -60326643 - L2 LINE L2 -1890 1424 379 324 48 0 0 chrX 102273846 102273888 -60326042 + (GA)n Simple_repeat Simple_repeat 1 42 0 499 285 40 20 chrX 102274379 102274530 -60325400 + MIR SINE MIR 3 156 -106 25 0 0 0 chrX 102275599 102275624 -60324306 + AT_rich Low_complexity Low_complexity 1 25 0 614 271 71 45 chrX 102275726 102276046 -60323884 - L2 LINE L2 -232 3040 2696 1001 248 127 32 chrX 102277057 102277460 -60322470 - MLT1J2 LTR MaLR -7 443 3 339 96 0 0 chrX 102277758 102277810 -60322120 + (TC)n Simple_repeat Simple_repeat 2 53 0 639 250 48 78 chrX 102279087 102279355 -60320575 + MIR SINE MIR 2 261 -1 528 59 0 0 chrX 102280100 102280168 -60319762 + (TA)n Simple_repeat Simple_repeat 1 68 0 209 329 0 29 chrX 102280636 102280706 -60319224 - L2 LINE L2 -17 3296 3229 377 278 130 30 chrX 102280827 102280996 -60318934 - MER5A DNA MER1_type 0 189 4 1014 265 96 17 chrX 102281154 102281561 -60318369 + MLT1J1 LTR MaLR 1 439 -7 25 0 0 0 chrX 102283057 102283082 -60316848 + AT_rich Low_complexity Low_complexity 1 25 0 808 251 31 12 chrX 102284421 102284676 -60315254 - MIR SINE MIR 0 262 3 232 261 46 9 chrX 102284809 102284927 -60315003 + MIR SINE MIR 63 146 -62 675 222 0 0 chrX 102285538 102285664 -60314266 + FLAM_A SINE Alu 1 126 -7 412 304 55 22 chrX 102285826 102286007 -60313923 - MIR SINE MIR 0 262 76 557 285 98 25 chrX 102286029 102286264 -60313666 + L2 LINE L2 3060 3311 -2 317 179 0 0 chrX 102286368 102286424 -60313506 - L1MC4 LINE L1 -1339 6703 6648 270 304 0 0 chrX 102287358 102287414 -60312516 + L2 LINE L2 3246 3301 -12 1585 163 0 35 chrX 102287421 102287515 -60312415 - AluJo SINE Alu -15 297 201 2096 117 21 56 chrX 102287515 102287891 -60312039 + THE1B LTR MaLR 2 364 0 1585 163 0 35 chrX 102287891 102288079 -60311851 - AluJo SINE Alu -111 201 25 1500 90 17 43 chrX 102288304 102288538 -60311392 - MER30 DNA MER1_type 0 230 3 682 297 43 23 chrX 102290116 102290372 -60309558 + MIR SINE MIR 2 262 0 504 291 128 6 chrX 102290807 102290979 -60308951 + L3 LINE CR1 1231 1423 -154 27 0 0 0 chrX 102291460 102291487 -60308443 + AT_rich Low_complexity Low_complexity 1 27 0 665 187 41 8 chrX 102291491 102291614 -60308316 - FLAM_C SINE Alu -6 127 1 185 195 158 61 chrX 102292139 102292221 -60307709 + L2 LINE L2 3195 3284 -29 475 294 124 23 chrX 102292875 102293140 -60306790 + L2 LINE L2 2541 2832 -482 267 245 0 71 chrX 102293202 102293300 -60306630 - L2 LINE L2 -77 3236 3146 213 221 88 0 chrX 102293631 102293699 -60306231 - L2 LINE L2 -204 3109 3036 * 505 322 33 119 chrX 102293690 102294177 -60305753 + L2 LINE L2 2827 3271 -1 225 77 26 26 chrX 102294393 102294432 -60305498 + L1ME2 LINE L1 6103 6141 -23 261 0 0 0 chrX 102294611 102294640 -60305290 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 50 18 0 0 chrX 102294647 102294704 -60305226 + AT_rich Low_complexity Low_complexity 1 57 0 202 143 55 0 chrX 102294704 102294795 -60305135 + (TA)n Simple_repeat Simple_repeat 1 96 0 239 0 0 31 chrX 102294996 102295028 -60304902 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2013 145 122 13 chrX 102295121 102295507 -60304423 + MSTA LTR MaLR 1 428 0 607 339 67 0 chrX 102297436 102297675 -60302255 + L3 LINE CR1 1312 1566 -11 531 227 27 7 chrX 102297788 102297938 -60301992 - L1MD2 LINE L1 -2 6357 6205 22 0 0 0 chrX 102297945 102297967 -60301963 + AT_rich Low_complexity Low_complexity 1 22 0 2136 122 0 19 chrX 102298120 102298431 -60301499 - AluSx SINE Alu -7 305 1 1143 199 28 5 chrX 102298431 102298822 -60301108 - L1MD2 LINE L1 -226 6133 5555 530 265 161 54 chrX 102298850 102299073 -60300857 - MIR SINE MIR -13 249 3 729 284 16 21 chrX 102299251 102299445 -60300485 + MIR SINE MIR 20 212 -50 324 222 14 0 chrX 102299692 102299764 -60300166 - MER58A DNA MER1_type -10 214 142 938 222 52 73 chrX 102299765 102300108 -60299822 + MER2 DNA MER2_type 2 337 -8 389 264 93 8 chrX 102300134 102300263 -60299667 - MER58A DNA MER1_type 0 141 2 916 124 15 0 chrX 102300405 102300542 -60299388 - MSTA LTR MaLR 0 428 290 1978 127 50 28 chrX 102300542 102300905 -60299025 - THE1C LTR MaLR 0 375 5 183 306 0 41 chrX 102301246 102301295 -60298635 - L2 LINE L2 -3251 63 17 436 369 6 6 chrX 102302075 102302235 -60297695 + MIR SINE MIR 2 161 -101 291 311 107 28 chrX 102304348 102304525 -60295405 + MIR3 SINE MIR 26 216 -46 194 272 110 52 chrX 102304813 102304949 -60294981 + MER5A DNA MER1_type 1 144 -45 2243 101 3 10 chrX 102305037 102305333 -60294597 + AluSq SINE Alu 1 294 -19 560 139 0 46 chrX 102305594 102305702 -60294228 + MER5A DNA MER1_type 1 103 -86 486 165 47 0 chrX 102305814 102305899 -60294031 + MER5A DNA MER1_type 101 189 0 189 175 0 0 chrX 102306164 102306204 -60293726 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 197 389 0 0 chrX 102306322 102306376 -60293554 + L3 LINE CR1 40 93 -1484 454 343 28 11 chrX 102307462 102307643 -60292287 + MIR3 SINE MIR 16 199 -9 2270 120 0 0 chrX 102307857 102308158 -60291772 + AluSx SINE Alu 1 301 -11 403 183 12 12 chrX 102308454 102308536 -60291394 - MLT1J2 LTR MaLR -301 149 68 815 223 38 5 chrX 102308629 102308813 -60291117 - MIR SINE MIR -26 236 47 894 244 53 23 chrX 102308904 102309207 -60290723 + MER20B DNA MER1_type 23 334 -449 1409 202 10 31 chrX 102309211 102309503 -60290427 - AluJo SINE Alu -25 287 2 1151 20 0 7 chrX 102309648 102309794 -60290136 - L1PA4 LINE L1 -147 6008 5864 833 192 24 0 chrX 102309855 102310022 -60289908 - MIR SINE MIR -24 238 68 852 247 30 8 chrX 102310069 102310336 -60289594 - L1MEc LINE L1 -4583 1813 1541 771 239 157 10 chrX 102310346 102310652 -60289278 + MER20B DNA MER1_type 433 783 0 1851 228 98 18 chrX 102311073 102311574 -60288356 - MLT1F LTR MaLR -1 541 1 229 317 0 0 chrX 102311630 102311690 -60288240 + (CATG)n Simple_repeat Simple_repeat 3 62 0 607 305 45 6 chrX 102311947 102312124 -60287806 + MIR SINE MIR 12 195 -67 183 185 185 31 chrX 102313846 102313911 -60286019 - MER5A DNA MER1_type -114 75 1 289 308 140 72 chrX 102314203 102314524 -60285406 - L2 LINE L2 -88 3184 2842 631 317 122 27 chrX 102314563 102314891 -60285039 + L2 LINE L2 2941 3299 -14 1589 169 50 14 chrX 102314929 102315207 -60284723 + AluJo SINE Alu 1 288 -24 789 255 31 35 chrX 102315207 102315497 -60284433 - L1MA10 LINE L1 -37 6297 6009 208 109 18 36 chrX 102315720 102315775 -60284155 + (TTTTTA)n Simple_repeat Simple_repeat 1 54 0 5477 86 0 3 chrX 102315775 102316516 -60283414 - L1PA8 LINE L1 -3 6169 5431 1536 179 35 27 chrX 102317717 102318089 -60281841 - MLT1A2 LTR MaLR 0 467 1 778 212 111 18 chrX 102318212 102318438 -60281492 + MIR SINE MIR 6 252 -10 980 164 12 0 chrX 102319215 102319386 -60280544 + MLT1B LTR MaLR 218 390 0 2867 219 34 22 chrX 102319410 102320789 -60279141 - L1MC/D LINE L1 -673 6080 4683 1763 176 0 7 chrX 102320821 102321117 -60278813 - AluJb SINE Alu -18 294 1 2372 227 59 38 chrX 102321212 102321804 -60278126 - L1MC/D LINE L1 -2031 4509 3896 2435 63 0 10 chrX 102321804 102322105 -60277825 - AluY SINE Alu -13 298 1 2372 227 59 38 chrX 102322105 102322256 -60277674 - L1MC/D LINE L1 -2644 3896 3750 1617 225 55 70 chrX 102322284 102322822 -60277108 - L1MC/D LINE L1 -4031 2509 1983 7678 23 0 0 chrX 102322822 102323849 -60276081 - L1PA2 LINE L1 0 6155 5128 1617 225 55 70 chrX 102323849 102324051 -60275879 - L1MC/D LINE L1 -4557 1983 1780 5963 75 45 4 chrX 102324076 102324977 -60274953 - L1MA2 LINE L1 0 6304 5367 1865 208 81 56 chrX 102324976 102325036 -60274894 - L1MC/D LINE L1 -4748 1792 1735 * 369 0 0 0 chrX 102325036 102325077 -60274853 + (TG)n Simple_repeat Simple_repeat 2 42 0 1865 208 81 56 chrX 102325077 102325771 -60274159 - L1MC/D LINE L1 -4805 1735 1019 225 0 0 0 chrX 102325773 102325798 -60274132 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 350 306 38 130 chrX 102325832 102326194 -60273736 - L1MDa LINE L1 -5545 995 555 236 247 65 0 chrX 102326199 102326276 -60273654 - L1MDa LINE L1 -5898 642 561 321 390 43 30 chrX 102326394 102326625 -60273305 - L1MDa LINE L1 -5813 727 494 586 312 131 51 chrX 102326646 102327081 -60272849 - L2 LINE L2 -94 3219 2726 2656 55 0 0 chrX 102327081 102327392 -60272538 - AluY SINE Alu 0 311 1 586 312 131 51 chrX 102327392 102327610 -60272320 - L2 LINE L2 -587 2726 2527 645 377 32 51 chrX 102329368 102329952 -60269978 - L1ME3 LINE L1 -308 5854 5282 469 177 0 0 chrX 102329956 102330052 -60269878 + L1MA5A LINE L1 6202 6297 0 23 0 0 0 chrX 102330058 102330081 -60269849 + AT_rich Low_complexity Low_complexity 1 23 0 1354 287 63 26 chrX 102330249 102330754 -60269176 + L1M4c LINE L1 17 540 -6249 2523 193 25 35 chrX 102330807 102331645 -60268285 + L1M4c LINE L1 2586 3415 -3373 * 4323 189 21 13 chrX 102331641 102332642 -60267288 + L1MA6 LINE L1 4155 5163 -983 5192 154 15 10 chrX 102332646 102333734 -60266196 + L1MA6 LINE L1 5202 6295 -5 580 304 64 29 chrX 102333785 102334607 -60265323 - L1 LINE L1 -1086 5060 4204 1703 294 61 33 chrX 102334718 102335568 -60264362 - L1 LINE L1 -1951 4195 3297 4435 14 2 0 chrX 102335568 102336073 -60263857 - L1PA3 LINE L1 -4 6151 5646 1703 294 61 33 chrX 102336073 102336474 -60263456 - L1 LINE L1 -2849 3297 2909 2310 290 71 28 chrX 102336485 102337762 -60262168 - ERVL LTR ERVL -2344 3141 1828 303 315 35 21 chrX 102338100 102338243 -60261687 - L1ME3A LINE L1 0 6170 6026 21 0 0 0 chrX 102338324 102338345 -60261585 + AT_rich Low_complexity Low_complexity 1 21 0 267 246 118 71 chrX 102338359 102338570 -60261360 - L1ME3A LINE L1 -202 5968 5748 1915 172 16 19 chrX 102338605 102338837 -60261093 - MLT1A1 LTR MaLR 0 365 133 1323 191 87 77 chrX 102338837 102339229 -60260701 + MSTD LTR MaLR 1 396 0 1915 172 16 19 chrX 102339229 102339362 -60260568 - MLT1A1 LTR MaLR -232 133 1 246 281 50 32 chrX 102339461 102339802 -60260128 - L1MEd LINE L1 -5039 1080 734 207 0 0 0 chrX 102339861 102339884 -60260046 + (T)n Simple_repeat Simple_repeat 1 23 0 1972 163 7 0 chrX 102339893 102340199 -60259731 + AluSx SINE Alu 1 308 -4 1404 155 44 56 chrX 102340969 102341311 -60258619 - L1MA7 LINE L1 -20 6271 5934 385 129 0 2 chrX 102341334 102341419 -60258511 + L1MA8 LINE L1 5874 5957 -343 1923 130 0 27 chrX 102341454 102341766 -60258164 + AluSx SINE Alu 1 304 0 303 222 22 67 chrX 102341853 102341943 -60257987 + L2 LINE L2 3165 3250 -63 729 208 63 0 chrX 102342865 102343024 -60256906 - MER97a DNA MER1_type? -724 170 2 197 308 19 0 chrX 102343063 102343115 -60256815 - MIR SINE MIR -30 232 180 14192 63 23 3 chrX 102343144 102345821 -60254109 - L1PA4 LINE L1 -1 6154 3439 5987 55 1 0 chrX 102345823 102346572 -60253358 + L1PA7 LINE L1 5405 6154 0 565 227 22 60 chrX 102346625 102346810 -60253120 - MER5B DNA MER1_type 0 178 1 448 288 0 30 chrX 102347245 102347377 -60252553 - MER5B DNA MER1_type 0 178 51 1471 272 91 5 chrX 102347659 102348170 -60251760 + L2 LINE L2 2531 3080 -233 5401 144 39 8 chrX 102348170 102348749 -60251181 + L1MC1 LINE L1 5322 5945 -388 1179 198 68 50 chrX 102348749 102349087 -60250843 - MER2 DNA MER2_type 0 344 1 5401 144 39 8 chrX 102349087 102349489 -60250441 + L1MC1 LINE L1 5945 6333 0 755 229 28 23 chrX 102349520 102349738 -60250192 + L2 LINE L2 3094 3312 -1 629 257 36 86 chrX 102349807 102350077 -60249853 - MIR SINE MIR -7 255 1 712 117 8 0 chrX 102350439 102350559 -60249371 + L1MA7 LINE L1 6161 6281 -10 9819 32 2 1 chrX 102351313 102352575 -60247355 - L1PA3 LINE L1 -1831 4315 3053 8993 24 0 1 chrX 102352575 102354405 -60245525 + L1PA3 LINE L1 4327 6155 0 267 103 0 0 chrX 102354408 102354447 -60245483 + (A)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chrX 102355295 102355316 -60244614 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 102357361 102357383 -60242547 + AT_rich Low_complexity Low_complexity 1 22 0 203 306 47 24 chrX 102357506 102357591 -60242339 + L3b LINE CR1 1351 1437 -146 901 301 61 47 chrX 102358017 102358512 -60241418 + L2 LINE L2 2812 3313 0 255 286 184 0 chrX 102358518 102358616 -60241314 + L2 LINE L2 2942 3057 -215 1935 120 52 73 chrX 102358771 102359154 -60240776 - THE1C LTR MaLR 0 375 1 3606 209 66 35 chrX 102359203 102359289 -60240641 + L1M4b LINE L1 5 87 -6772 180 0 0 0 chrX 102359289 102359309 -60240621 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3606 209 66 35 chrX 102359309 102360649 -60239281 + L1M4b LINE L1 87 1558 -5301 591 264 59 25 chrX 102360643 102360882 -60239048 + L1M4b LINE L1 2080 2326 -4633 * 914 180 0 28 chrX 102360903 102361081 -60238849 + MER2 DNA MER2_type 2 174 -171 1978 119 22 0 chrX 102361206 102361484 -60238446 - AluSq SINE Alu -29 284 1 350 254 0 0 chrX 102361484 102361555 -60238375 + MER2 DNA MER2_type 274 344 -1 624 274 57 22 chrX 102361840 102362242 -60237688 + L1M4b LINE L1 2565 2980 -4158 399 73 0 0 chrX 102362245 102362300 -60237630 + (CA)n Simple_repeat Simple_repeat 2 56 0 324 270 40 10 chrX 102362494 102362594 -60237336 + MIR SINE MIR 87 189 -73 9134 32 0 7 chrX 102362729 102364595 -60235335 - L1PA4 LINE L1 0 6155 4277 1768 163 27 3 chrX 102364653 102364954 -60234976 - AluJo SINE Alu -4 308 1 22 0 0 0 chrX 102364960 102364982 -60234948 + AT_rich Low_complexity Low_complexity 1 22 0 678 288 22 0 chrX 102365135 102365361 -60234569 - L1MC4a LINE L1 -1846 5962 5732 349 325 20 13 chrX 102365955 102366106 -60233824 - L1MC4a LINE L1 -2195 5613 5462 240 216 86 43 chrX 102366135 102366251 -60233679 - L1MC4a LINE L1 -797 5387 5267 211 284 69 88 chrX 102366430 102366532 -60233398 - MER5A DNA MER1_type -70 119 20 585 184 231 7 chrX 102367158 102367305 -60232625 - MER5A DNA MER1_type -6 183 4 285 125 0 0 chrX 102367786 102367826 -60232104 + Alu SINE Alu 238 277 -25 198 103 0 0 chrX 102368379 102368408 -60231522 + (A)n Simple_repeat Simple_repeat 1 29 0 858 116 0 25 chrX 102374025 102374146 -60225784 + AluJb SINE Alu 1 118 -194 2463 112 28 6 chrX 102375006 102375362 -60224568 + THE1B LTR MaLR 1 364 0 1854 161 3 26 chrX 102376210 102376521 -60223409 - AluJb SINE Alu -7 305 2 894 197 6 6 chrX 102376887 102377065 -60222865 - MER3 DNA MER1_type -30 179 2 500 296 69 61 chrX 102377265 102377626 -60222304 + L1ME4a LINE L1 4670 5033 -1113 315 250 300 20 chrX 102377864 102378064 -60221866 + L1ME4a LINE L1 5258 5513 -2295 362 298 87 24 chrX 102378084 102378416 -60221514 + L1ME4a LINE L1 5544 5896 -225 840 253 29 29 chrX 102379657 102379902 -60220028 - MIR SINE MIR 0 262 18 242 179 0 0 chrX 102379956 102380012 -60219918 + L1ME4a LINE L1 6062 6117 -4 202 374 93 51 chrX 102380304 102380636 -60219294 + L2 LINE L2 999 1344 -1970 342 340 82 42 chrX 102380851 102381301 -60218629 - L2 LINE L2 -1981 1333 866 1622 230 71 14 chrX 102381451 102381947 -60217983 + L1MC4 LINE L1 6450 6973 -1069 252 187 53 0 chrX 102382121 102382196 -60217734 - LTR33 LTR ERVL -442 79 1 602 208 223 39 chrX 102382204 102382540 -60217390 + HAL1 LINE L1 1751 2148 -359 3477 129 12 17 chrX 102382815 102383390 -60216540 + L1PA15 LINE L1 5591 6162 -3 276 272 48 32 chrX 102384460 102384585 -60215345 + MIR3 SINE MIR 76 202 -6 571 141 47 0 chrX 102385364 102385449 -60214481 - AluS SINE Alu -223 89 1 1064 83 11 38 chrX 102386127 102386492 -60213438 + (TTTC)n Simple_repeat Simple_repeat 1 536 0 2019 153 3 10 chrX 102386495 102386808 -60213122 - AluSx SINE Alu -1 311 1 2102 166 26 28 chrX 102386853 102387311 -60212619 - L1MB7 LINE L1 -17 6167 5711 342 295 9 27 chrX 102387597 102387628 -60212302 - MIR3 SINE MIR -18 190 160 506 268 5 32 chrX 102387628 102387818 -60212112 + MER5A DNA MER1_type 5 189 0 342 295 9 27 chrX 102387818 102387898 -60212032 - MIR3 SINE MIR -48 160 81 192 250 0 0 chrX 102388039 102388079 -60211851 + L2 LINE L2 3262 3301 -12 23 54 0 0 chrX 102388542 102388579 -60211351 + AT_rich Low_complexity Low_complexity 1 37 0 312 303 11 0 chrX 102388771 102388860 -60211070 - L1MC4 LINE L1 -1339 6703 6614 521 0 109 5 chrX 102388861 102389044 -60210886 + (TA)n Simple_repeat Simple_repeat 1 202 0 6151 91 19 7 chrX 102389077 102390087 -60209843 - L1PA13 LINE L1 -19 6144 5131 641 270 6 25 chrX 102390734 102390893 -60209037 + MIR SINE MIR 70 225 -37 238 284 20 49 chrX 102390933 102391035 -60208895 - MER5A DNA MER1_type -54 135 37 231 216 0 0 chrX 102391044 102391081 -60208849 - MER5A DNA MER1_type 0 189 153 3047 80 25 16 chrX 102392626 102392664 -60207266 - MLT2A2 LTR ERVL 0 453 417 808 95 79 0 chrX 102392664 102392790 -60207140 + MER85 DNA T2_type 4 139 0 3047 80 25 16 chrX 102392790 102393200 -60206730 - MLT2A2 LTR ERVL -36 417 1 2192 137 0 0 chrX 102393658 102393965 -60205965 - AluSx SINE Alu -5 307 1 391 326 63 23 chrX 102394276 102394451 -60205479 + MIR3 SINE MIR 14 195 -13 243 0 0 0 chrX 102395658 102395685 -60204245 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 444 37 0 0 chrX 102395761 102395815 -60204115 + (TG)n Simple_repeat Simple_repeat 2 55 0 314 313 97 22 chrX 102396999 102397133 -60202797 + MIR3 SINE MIR 19 162 -46 221 305 53 83 chrX 102397130 102397528 -60202402 + L2 LINE L2 2608 3062 -210 * 471 202 10 19 chrX 102397676 102397780 -60202150 - L2 LINE L2 -11 3302 3200 267 272 0 43 chrX 102397773 102397865 -60202065 + L2 LINE L2 3217 3304 -9 * 886 301 148 31 chrX 102398135 102398972 -60200958 - L2 LINE L2 0 3313 2379 192 179 0 0 chrX 102399017 102399056 -60200874 + (TGG)n Simple_repeat Simple_repeat 1 39 0 297 298 81 16 chrX 102399409 102399533 -60200397 + MER5A DNA MER1_type 1 132 -57 1908 182 47 4 chrX 102399583 102400033 -60199897 - Charlie4a DNA MER1_type -1 507 39 24 0 0 0 chrX 102400171 102400195 -60199735 + AT_rich Low_complexity Low_complexity 1 24 0 431 311 105 72 chrX 102400408 102400674 -60199256 - L2 LINE L2 -339 2975 2719 1990 122 3 39 chrX 102400674 102400985 -60198945 + AluSx SINE Alu 1 300 -12 431 311 105 72 chrX 102400985 102401319 -60198611 - L2 LINE L2 -595 2719 2355 464 287 33 39 chrX 102401329 102401510 -60198420 - L2 LINE L2 -832 2482 2303 21 0 0 0 chrX 102402507 102402528 -60197402 + AT_rich Low_complexity Low_complexity 1 21 0 187 319 115 9 chrX 102402723 102402836 -60197094 + L2 LINE L2 3187 3311 -2 25 0 0 0 chrX 102402860 102402885 -60197045 + AT_rich Low_complexity Low_complexity 1 25 0 1726 174 39 4 chrX 102402885 102403166 -60196764 - AluJb SINE Alu -19 293 3 405 0 0 0 chrX 102403271 102403316 -60196614 + (CA)n Simple_repeat Simple_repeat 1 45 0 3373 120 17 4 chrX 102404137 102404662 -60195268 - L1PA16 LINE L1 -4 6865 6334 2236 43 7 0 chrX 102404749 102405027 -60194903 - L1PA5 LINE L1 0 6154 5875 678 128 0 0 chrX 102405043 102405152 -60194778 - L1PA16 LINE L1 -4 6162 6054 1083 109 6 0 chrX 102405163 102405328 -60194602 - L1PA16 LINE L1 -540 6329 6164 1810 142 36 0 chrX 102405347 102405650 -60194280 + L1P4 LINE L1 5470 5783 -382 29661 107 22 54 chrX 102405662 102411969 -60187961 + L1PA7 LINE L1 12 6112 -42 10348 113 3 17 chrX 102411968 102413688 -60186242 - L1P3 LINE L1 -3509 2952 1257 * 6325 32 5 0 chrX 102413729 102414516 -60185414 + L1P LINE L1 3967 4757 -1389 4226 139 23 8 chrX 102414513 102415176 -60184754 - L1P3 LINE L1 -5224 1237 561 * 2613 58 0 0 chrX 102415176 102415485 -60184445 + AluY SINE Alu 1 309 -2 4226 139 23 8 chrX 102415485 102415546 -60184384 - L1P3 LINE L1 -5900 561 502 17465 178 51 10 chrX 102415576 102418840 -60181090 - L1PA16 LINE L1 -757 6092 2965 6751 79 17 12 chrX 102418840 102419819 -60180111 - L1PA10 LINE L1 -4 6164 5191 200 33 0 33 chrX 102419819 102419849 -60180081 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6751 79 17 12 chrX 102419849 102419878 -60180052 - L1PA10 LINE L1 -977 5191 5164 4837 112 4 13 chrX 102419878 102420575 -60179355 + LTR8 LTR ERV1 1 691 0 6751 79 17 12 chrX 102420575 102420744 -60179186 - L1PA10 LINE L1 -1004 5164 4982 17465 178 51 10 chrX 102420744 102423291 -60176639 - L1PA16 LINE L1 -3884 2965 1 430 356 57 15 chrX 102423509 102423788 -60176142 - L2 LINE L2 -203 3069 2778 763 96 9 0 chrX 102423836 102423951 -60175979 + L1PB2 LINE L1 6030 6145 -6 2524 67 0 3 chrX 102423978 102424290 -60175640 + AluY SINE Alu 1 311 0 276 116 70 23 chrX 102424527 102424613 -60175317 + (TATAA)n Simple_repeat Simple_repeat 5 94 0 246 156 78 0 chrX 102424861 102424938 -60174992 + (TA)n Simple_repeat Simple_repeat 2 84 0 1367 143 107 98 chrX 102424940 102425276 -60174654 + L1PA15-16 LINE L1 560 898 -5951 878 260 10 5 chrX 102427010 102427218 -60172712 - MER63A DNA MER1_type -1 209 1 464 285 128 44 chrX 102427967 102428315 -60171615 + L1MC4a LINE L1 5281 5242 -904 186 43 0 0 chrX 102428315 102428338 -60171592 + (CATATA)n Simple_repeat Simple_repeat 5 27 0 464 285 128 44 chrX 102428338 102428509 -60171421 + L1MC4a LINE L1 5241 5396 -750 224 130 22 0 chrX 102428793 102428839 -60171091 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 215 194 0 0 chrX 102429160 102429196 -60170734 + polypyrimidine Low_complexity Low_complexity 5 40 0 506 287 69 32 chrX 102429454 102429642 -60170288 + MIR SINE MIR 4 198 -64 207 269 77 0 chrX 102429636 102429688 -60170242 - MIR SINE MIR -1 261 206 * 368 315 98 21 chrX 102429748 102429891 -60170039 + L2 LINE L2 3118 3271 -1 309 89 0 0 chrX 102429917 102429962 -60169968 + (TG)n Simple_repeat Simple_repeat 2 46 0 2129 103 7 3 chrX 102430445 102430727 -60169203 - AluSc SINE Alu -16 293 11 728 46 0 5 chrX 102430821 102430911 -60169019 - L1PA4 LINE L1 -208 5946 5859 1691 29 5 0 chrX 102430911 102431113 -60168817 + L1PA4 LINE L1 5948 6152 -3 728 46 0 5 chrX 102431113 102431133 -60168797 - L1PA5 LINE L1 -295 5859 5840 22 0 0 0 chrX 102431652 102431674 -60168256 + AT_rich Low_complexity Low_complexity 1 22 0 3263 111 17 6 chrX 102431675 102432198 -60167732 - L1MA4A LINE L1 -6 6297 5769 1280 163 15 1 chrX 102432200 102432461 -60167469 - L1MA4A LINE L1 -465 5715 5451 346 294 80 38 chrX 102432410 102432648 -60167282 + L1MC4a LINE L1 5620 5867 -1941 * 4466 144 8 17 chrX 102432815 102433597 -60166333 - L1M1 LINE L1 -743 6105 5415 2153 104 0 61 chrX 102433597 102433771 -60166159 - AluSx SINE Alu -5 307 161 2229 105 0 3 chrX 102433771 102434066 -60165864 - AluSg SINE Alu -15 295 2 2153 104 0 61 chrX 102434066 102434218 -60165712 - AluSx SINE Alu -151 161 1 4466 144 8 17 chrX 102434218 102434459 -60165471 - L1M1 LINE L1 -1433 5415 5173 41574 46 1 1 chrX 102434461 102440610 -60159320 - L1PA4 LINE L1 -2 6153 3 12415 198 27 44 chrX 102440613 102441393 -60158537 - L1M1 LINE L1 -1669 5179 4388 510 57 0 0 chrX 102441393 102441463 -60158467 + (TG)n Simple_repeat Simple_repeat 1 70 0 12415 198 27 44 chrX 102441463 102445949 -60153981 - L1M1 LINE L1 -2460 4388 2 514 247 35 23 chrX 102445951 102446105 -60153825 - L1ME LINE L1 -299 5822 5664 2135 113 13 7 chrX 102446105 102446405 -60153525 - AluSq SINE Alu -11 302 1 514 247 35 23 chrX 102446405 102446424 -60153506 - L1ME LINE L1 -457 5664 5647 252 288 25 62 chrX 102446616 102446776 -60153154 - L1ME LINE L1 -515 5606 5453 567 40 0 0 chrX 102447716 102447790 -60152140 - L1PA3 LINE L1 -3 6152 6079 738 305 111 88 chrX 102447959 102448312 -60151618 + L2 LINE L2 1335 1678 -1594 229 164 55 18 chrX 102448312 102448367 -60151563 + L1MC3 LINE L1 7333 7389 -396 738 305 111 88 chrX 102448367 102449402 -60150528 + L2 LINE L2 1678 3272 0 993 296 120 30 chrX 102449404 102449870 -60150060 + L3 LINE CR1 331 838 -739 261 283 81 30 chrX 102449884 102449983 -60149947 - L2 LINE L2 0 3313 3210 195 378 56 0 chrX 102450008 102450098 -60149832 + L3 LINE CR1 1004 1098 -479 1112 271 45 37 chrX 102450156 102450559 -60149371 - MLT1I LTR MaLR -1 408 3 395 281 113 34 chrX 102451793 102452121 -60147809 - L1MC/D LINE L1 -304 5817 5514 229 294 0 35 chrX 102452256 102452341 -60147589 - L3 LINE CR1 -227 1350 1269 324 325 8 8 chrX 102452375 102452501 -60147429 - MLT1J LTR MaLR -339 172 47 421 331 89 0 chrX 102452846 102453015 -60146915 + L3 LINE CR1 1381 1564 -13 604 258 127 9 chrX 102454468 102454681 -60145249 + MIR SINE MIR 12 249 -13 554 251 58 23 chrX 102455529 102455846 -60144084 - LTR16C LTR ERVL -1 490 89 540 188 87 47 chrX 102456074 102456223 -60143707 - L2 LINE L2 -1 3312 3158 493 311 139 14 chrX 102457889 102458203 -60141727 - L2 LINE L2 -169 3144 2792 18880 67 2 3 chrX 102458205 102460842 -60139088 - L1PA6 LINE L1 -1405 4741 2106 6755 66 9 3 chrX 102460842 102462251 -60137679 + L1PA6 LINE L1 4740 6154 0 359 284 0 11 chrX 102462263 102462351 -60137579 - L2 LINE L2 -518 2796 2710 362 201 20 20 chrX 102464159 102464286 -60135644 + (TA)n Simple_repeat Simple_repeat 2 128 -22 1610 165 19 0 chrX 102464286 102464552 -60135378 + AluJb SINE Alu 11 281 -31 362 201 20 20 chrX 102464552 102464568 -60135362 + (TA)n Simple_repeat Simple_repeat 123 146 0 258 32 0 0 chrX 102464568 102464599 -60135331 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 182 36 0 chrX 102465025 102465080 -60134850 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 23 54 0 0 chrX 102465228 102465265 -60134665 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chrX 102466962 102466992 -60132938 + AT_rich Low_complexity Low_complexity 1 30 0 424 383 70 8 chrX 102467848 102468234 -60131696 - L1MEc LINE L1 -5929 467 58 1315 248 114 25 chrX 102468374 102469040 -60130890 - L1MC4a LINE L1 -1233 6575 5851 23 0 0 0 chrX 102469098 102469121 -60130809 + AT_rich Low_complexity Low_complexity 1 23 0 479 260 68 44 chrX 102469235 102469620 -60130310 - L1ME4a LINE L1 -180 5941 5548 216 0 0 0 chrX 102469717 102469741 -60130189 + (TG)n Simple_repeat Simple_repeat 2 25 0 778 220 121 27 chrX 102471043 102471266 -60128664 - MIR SINE MIR -6 256 13 467 307 57 0 chrX 102471292 102471432 -60128498 - MIR SINE MIR -109 153 6 180 330 57 52 chrX 102471540 102471734 -60128196 - L2 LINE L2 -213 3059 2865 1602 55 0 0 chrX 102471946 102472145 -60127785 - L1PA3 LINE L1 0 6155 5957 328 354 114 25 chrX 102472917 102473148 -60126782 + L2 LINE L2 1983 2192 -1122 493 191 48 112 chrX 102473148 102473336 -60126594 - MER5B DNA MER1_type -2 176 1 328 354 114 25 chrX 102473336 102473593 -60126337 + L2 LINE L2 2192 2515 -799 2170 186 50 71 chrX 102473626 102474192 -60125738 - MLT2B3 LTR ERVL 0 554 1 807 166 40 7 chrX 102474221 102474372 -60125558 - L1PA16 LINE L1 -9 6157 6002 182 274 26 142 chrX 102474561 102474674 -60125256 + L2 LINE L2 2727 2826 -488 23 0 0 0 chrX 102474726 102474749 -60125181 + AT_rich Low_complexity Low_complexity 1 23 0 192 179 0 0 chrX 102474761 102474800 -60125130 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 261 57 0 0 chrX 102474800 102474835 -60125095 + (CA)n Simple_repeat Simple_repeat 2 36 0 422 316 56 114 chrX 102474968 102475344 -60124586 + L2 LINE L2 2919 3272 0 40226 39 23 2 chrX 102475720 102481743 -60118187 - L1PA2 LINE L1 -2 6153 1 262 111 0 0 chrX 102482343 102482379 -60117551 - L1PA7 LINE L1 -230 5942 5907 1568 87 5 0 chrX 102482388 102482606 -60117324 + L1PA7 LINE L1 5936 6154 0 474 371 121 4 chrX 102483648 102483888 -60116042 - L3 LINE CR1 -7 1570 1303 781 256 6 0 chrX 102484049 102484213 -60115717 + MER45A DNA AcHobo 1 165 -13 230 291 0 13 chrX 102485076 102485155 -60114775 + L3b LINE CR1 1155 1232 -351 208 233 142 75 chrX 102485259 102485379 -60114551 + L3b LINE CR1 1456 1583 0 359 260 79 92 chrX 102485554 102485923 -60114007 - MARNA DNA Mariner -69 517 154 203 318 15 0 chrX 102486079 102486145 -60113785 - MIR3 SINE MIR 0 208 142 321 279 0 0 chrX 102486233 102486301 -60113629 + L2 LINE L2 3246 3313 0 264 314 74 25 chrX 102486875 102486996 -60112934 + MIR3 SINE MIR 30 156 -52 209 271 48 127 chrX 102487923 102488089 -60111841 - MIR3 SINE MIR -40 168 16 194 351 11 43 chrX 102489073 102489167 -60110763 + MIR SINE MIR 31 121 -141 1278 50 0 0 chrX 102489240 102489399 -60110531 + L1PA5 LINE L1 5992 6150 -4 1238 87 0 29 chrX 102489399 102489607 -60110323 + AluY SINE Alu 133 311 0 298 315 22 0 chrX 102490539 102490631 -60109299 - MIR SINE MIR -16 246 153 2550 139 26 5 chrX 102490777 102491200 -60108730 - MSTB1 LTR MaLR 0 432 1 442 318 124 51 chrX 102491427 102491890 -60108040 + L2 LINE L2 2579 3074 -198 373 202 11 11 chrX 102491901 102491990 -60107940 + MER103 DNA DNA 32 120 -46 633 238 135 16 chrX 102491998 102492183 -60107747 + L2 LINE L2 3105 3311 -2 48 53 0 0 chrX 102492388 102492464 -60107466 + AT_rich Low_complexity Low_complexity 1 76 0 228 325 0 12 chrX 102495561 102495641 -60104289 - MIR SINE MIR -63 145 67 5752 33 14 0 chrX 102495981 102496670 -60103260 - L1PA4 LINE L1 -7 6148 5450 268 305 145 15 chrX 102498131 102498400 -60101530 - L2 LINE L2 -1666 1648 1345 297 51 0 0 chrX 102498957 102498996 -60100934 + (GA)n Simple_repeat Simple_repeat 1 39 0 628 260 44 54 chrX 102499325 102499426 -60100504 - MIR SINE MIR -16 246 146 2223 116 0 0 chrX 102499426 102499727 -60100203 - AluSx SINE Alu -10 302 2 628 260 44 54 chrX 102499727 102499829 -60100101 - MIR SINE MIR -116 146 45 214 278 56 14 chrX 102499874 102499946 -60099984 - MIR SINE MIR -93 115 41 391 230 126 0 chrX 102499977 102500064 -60099866 + MER5A DNA MER1_type 4 101 -88 412 296 133 7 chrX 102501180 102501315 -60098615 - L2 LINE L2 0 3272 3121 1720 259 33 62 chrX 102501422 102502033 -60097897 - MLT1E LTR MaLR 0 593 1 214 270 14 14 chrX 102502556 102502630 -60097300 + CT-rich Low_complexity Low_complexity 1 74 0 406 304 61 45 chrX 102502650 102502729 -60097201 - MLT1J LTR MaLR -117 394 318 3540 129 8 8 chrX 102502729 102503256 -60096674 - MER1A DNA MER1_type 0 527 1 406 304 61 45 chrX 102503256 102503268 -60096662 - MLT1J LTR MaLR -193 318 308 906 210 128 5 chrX 102503268 102503463 -60096467 + MER58A DNA MER1_type 5 223 -1 406 304 61 45 chrX 102503463 102503683 -60096247 - MLT1J LTR MaLR -203 308 77 199 341 0 0 chrX 102503719 102503804 -60096126 - MIR SINE MIR -105 157 73 1013 242 14 5 chrX 102504809 102505020 -60094910 - MIR SINE MIR -19 243 31 392 296 112 8 chrX 102507080 102507205 -60092725 + L2 LINE L2 3117 3254 -18 689 265 65 9 chrX 102507262 102507477 -60092453 - MIR SINE MIR -4 258 32 340 328 22 54 chrX 102507829 102508014 -60091916 - L2 LINE L2 -336 2977 2800 695 237 75 35 chrX 102508717 102508945 -60090985 - MIR SINE MIR -6 256 20 328 278 93 19 chrX 102509467 102509575 -60090355 + L2 LINE L2 3189 3304 -9 533 236 8 21 chrX 102509702 102509865 -60090065 + MIR SINE MIR 6 150 -58 263 296 86 0 chrX 102509947 102510028 -60089902 - MIR SINE MIR -57 205 118 189 309 25 62 chrX 102511717 102511798 -60088132 + MIR SINE MIR 63 140 -68 236 316 74 11 chrX 102512680 102512775 -60087155 + MIR SINE MIR 5 105 -157 3490 204 59 13 chrX 102513315 102514257 -60085673 + L1MB5 LINE L1 5185 6166 -8 2395 125 48 0 chrX 102514303 102514695 -60085235 + Tigger3b DNA MER2_type 28 438 -793 1226 87 22 0 chrX 102514695 102514878 -60085052 + Tigger3b DNA MER2_type 970 1156 -75 259 225 22 56 chrX 102516451 102516540 -60083390 + L3b LINE CR1 1290 1375 -208 186 262 143 36 chrX 102516817 102516901 -60083029 + L3b LINE CR1 1482 1574 -9 207 184 0 0 chrX 102517214 102517252 -60082678 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 376 256 60 0 chrX 102517278 102517431 -60082499 - MLT1J2 LTR MaLR -15 428 272 243 279 44 73 chrX 102517443 102517579 -60082351 - MLT1J2 LTR MaLR -293 157 26 5670 169 12 20 chrX 102517620 102517914 -60082016 - L1P LINE L1 -1873 4273 3978 1807 157 65 14 chrX 102517914 102518270 -60081660 + THE1C LTR MaLR 1 374 -1 5670 169 12 20 chrX 102518270 102519149 -60080781 - L1P LINE L1 -2168 3978 3110 6045 90 16 26 chrX 102519150 102521077 -60078853 + L1PA13 LINE L1 4244 6163 0 6158 25 9 0 chrX 102521232 102521993 -60077937 - L1PA4 LINE L1 -1 6154 5387 1829 146 58 22 chrX 102522002 102522364 -60077566 + THE1C LTR MaLR 1 375 0 867 230 11 5 chrX 102522427 102522614 -60077316 - MER58A DNA MER1_type -1 223 36 277 272 44 53 chrX 102523130 102523244 -60076686 - MLT1K LTR MaLR -362 226 114 5639 108 13 0 chrX 102524478 102525321 -60074609 + L1PA10 LINE L1 5315 6168 0 1240 237 37 6 chrX 102525732 102526053 -60073877 - MER58B DNA MER1_type 0 341 11 1275 288 98 36 chrX 102527108 102527955 -60071975 + L1ME1 LINE L1 242 1156 -4963 1130 29 0 0 chrX 102527955 102528092 -60071838 + L1PA4 LINE L1 6013 6149 -6 1275 288 98 36 chrX 102528092 102528196 -60071734 + L1ME1 LINE L1 1156 1252 -4867 1380 207 10 0 chrX 102528348 102528511 -60071419 - L1 LINE L1 -1196 4950 4781 7908 86 6 3 chrX 102528511 102530399 -60069531 - L1PA7 LINE L1 -4 6150 4256 1380 207 10 0 chrX 102530399 102530539 -60069391 - L1 LINE L1 -1365 4781 4644 * 5010 143 32 32 chrX 102530531 102531733 -60068197 + L1PB4 LINE L1 4955 6156 0 429 332 84 11 chrX 102531745 102532007 -60067923 + L1ME1 LINE L1 1451 1731 -4579 1913 182 76 29 chrX 102532057 102532503 -60067427 + MLT1C LTR MaLR 1 467 0 281 105 0 0 chrX 102533087 102533125 -60066805 + MER58 DNA MER1_type 50 87 -254 2355 125 5 3 chrX 102533126 102533494 -60066436 - L1PA13 LINE L1 -6 6157 5789 266 316 90 14 chrX 102533539 102533817 -60066113 + L1ME1 LINE L1 2231 2529 -3600 5555 25 2 0 chrX 102533854 102534498 -60065432 - L1PA3 LINE L1 -11 6144 5500 3527 16 13 0 chrX 102584498 102585126 -60014804 - L1P2 LINE L1 -556 5599 4967 1927 138 0 17 chrX 102585131 102585427 -60014503 - AluSx SINE Alu -21 291 1 1343 310 73 31 chrX 102585586 102586876 -60013054 + L1ME1 LINE L1 2659 4002 -2127 22 0 0 0 chrX 102587005 102587027 -60012903 + AT_rich Low_complexity Low_complexity 1 22 0 1899 114 25 18 chrX 102587032 102587163 -60012767 + AluSx SINE Alu 3 132 -194 186 103 0 0 chrX 102587163 102587192 -60012738 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1899 114 25 18 chrX 102587192 102587382 -60012548 + AluSx SINE Alu 132 326 0 281 256 0 0 chrX 102587431 102587513 -60012417 + L1ME1 LINE L1 4993 5074 -1055 3920 208 20 21 chrX 102587514 102588511 -60011419 + L1ME1 LINE L1 5130 6131 -18 29 0 0 0 chrX 102588511 102588540 -60011390 + AT_rich Low_complexity Low_complexity 1 29 0 368 264 99 0 chrX 102588573 102588694 -60011236 - MER94 DNA DNA -1 133 1 21 57 0 0 chrX 102588890 102588925 -60011005 + AT_rich Low_complexity Low_complexity 1 35 0 281 350 106 26 chrX 102589620 102589915 -60010015 + L2 LINE L2 2773 3087 -185 180 222 22 22 chrX 102590068 102590113 -60009817 + L2 LINE L2 3269 3313 0 401 198 12 12 chrX 102591897 102591978 -60007952 + MER94 DNA DNA 1 81 -53 1862 167 0 7 chrX 102592378 102592677 -60007253 + AluJo SINE Alu 1 297 -15 22 0 0 0 chrX 102593030 102593052 -60006878 + AT_rich Low_complexity Low_complexity 1 22 0 740 179 64 35 chrX 102593079 102593252 -60006678 - MER5B DNA MER1_type 0 178 1 26 30 0 0 chrX 102594430 102594463 -60005467 + AT_rich Low_complexity Low_complexity 1 33 0 291 160 20 0 chrX 102596218 102596268 -60003662 + L2 LINE L2 3216 3266 -6 273 196 0 0 chrX 102598281 102598332 -60001598 - L2 LINE L2 0 3313 3263 200 256 0 0 chrX 102598342 102598385 -60001545 - L2 LINE L2 0 3313 3271 25 0 0 0 chrX 102598487 102598512 -60001418 + AT_rich Low_complexity Low_complexity 1 25 0 254 240 0 40 chrX 102599639 102599689 -60000241 + L2 LINE L2 3212 3259 -13 250 333 163 7 chrX 102599826 102599979 -59999951 - MIR SINE MIR -10 252 76 25 0 0 0 chrX 102600209 102600234 -59999696 + AT_rich Low_complexity Low_complexity 1 25 0 591 276 43 102 chrX 102601080 102601471 -59998459 - L2 LINE L2 -2 3270 2903 1231 288 126 15 chrX 102602131 102602607 -59997323 + MLT1G1 LTR MaLR 61 589 -6 341 308 103 8 chrX 102604632 102604749 -59995181 + MIR3 SINE MIR 65 192 -16 643 261 113 19 chrX 102604940 102605197 -59994733 - L2 LINE L2 0 3313 3033 331 200 27 0 chrX 102605584 102605659 -59994271 + MIR SINE MIR 176 252 -10 189 0 0 0 chrX 102606001 102606022 -59993908 + (TG)n Simple_repeat Simple_repeat 1 21 0 236 301 117 19 chrX 102607775 102607878 -59992052 - MIR3 SINE MIR -94 114 2 255 244 0 39 chrX 102609000 102609078 -59990852 - MIR SINE MIR -88 174 100 748 107 8 16 chrX 102609134 102609255 -59990675 + L1PA15 LINE L1 6036 6155 -10 2106 253 124 18 chrX 102610239 102611299 -59988631 - L2 LINE L2 -1 3312 2135 487 206 99 0 chrX 102611356 102611497 -59988433 + L1ME4a LINE L1 5962 6116 -5 235 349 35 35 chrX 102612923 102613009 -59986921 + MIR SINE MIR 22 107 -155 312 355 53 13 chrX 102613093 102613245 -59986685 + MIR SINE MIR 75 232 -30 6763 136 24 2 chrX 102613385 102614832 -59985098 - L1MA1 LINE L1 0 6302 4821 2684 101 3 8 chrX 102614832 102615209 -59984721 - THE1C LTR MaLR 0 375 1 9456 103 59 56 chrX 102615209 102615523 -59984407 - THE1C-int LTR MaLR -1 1579 1268 1229 78 0 17 chrX 102615523 102615703 -59984227 + (TTCTCC)n Simple_repeat Simple_repeat 3 179 0 9456 103 59 56 chrX 102615703 102615717 -59984213 - THE1C-int LTR MaLR -312 1268 1256 2166 126 0 3 chrX 102615717 102616019 -59983911 - AluSx SINE Alu -11 301 1 9456 103 59 56 chrX 102616019 102617263 -59982667 - THE1C-int LTR MaLR -324 1256 1 2227 104 104 17 chrX 102617263 102617608 -59982322 - THE1C LTR MaLR 0 375 1 8189 149 10 11 chrX 102617608 102619064 -59980866 - L1MA1 LINE L1 -1321 4825 3371 360 0 0 0 chrX 102620089 102620129 -59979801 + (CCTG)n Simple_repeat Simple_repeat 2 41 0 261 180 0 0 chrX 102620131 102620181 -59979749 + CT-rich Low_complexity Low_complexity 4 53 0 696 276 158 0 chrX 102620263 102620484 -59979446 - MIR SINE MIR -1 261 6 27 29 0 0 chrX 102621683 102621717 -59978213 + AT_rich Low_complexity Low_complexity 1 34 0 1097 154 52 7 chrX 102621738 102621985 -59977945 - L1MA8 LINE L1 -26 6286 6032 314 281 39 65 chrX 102621996 102622149 -59977781 + L2 LINE L2 2610 2758 -556 293 328 118 15 chrX 102622262 102622457 -59977473 + MER20B DNA MER1_type 1 215 -4 625 283 5 88 chrX 102622664 102622869 -59977061 + MIR3 SINE MIR 9 196 -12 186 143 0 0 chrX 102624140 102624175 -59975755 + (CCA)n Simple_repeat Simple_repeat 1 35 0 753 274 79 0 chrX 102624177 102624418 -59975512 - MIR SINE MIR -1 261 2 1430 60 0 0 chrX 102624459 102624641 -59975289 - L1PA13 LINE L1 -5 6158 5977 276 308 8 34 chrX 102625750 102625867 -59974063 + MIR3 SINE MIR 83 196 -12 1972 168 3 0 chrX 102626626 102626929 -59973001 - AluJb SINE Alu -8 304 1 559 276 176 31 chrX 102627137 102627627 -59972303 + MLT1K LTR MaLR 17 604 -11 192 326 153 0 chrX 102627815 102627913 -59972017 - L2 LINE L2 -17 3255 3143 414 243 14 81 chrX 102630125 102630273 -59969657 + MIR SINE MIR 59 196 -66 1643 171 31 11 chrX 102630419 102630770 -59969160 - L1MC3 LINE L1 -6 7779 7422 * 5080 149 37 14 chrX 102630756 102631262 -59968668 - L1MB3 LINE L1 -8 6175 5682 459 0 0 0 chrX 102631262 102631313 -59968617 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1704 131 0 19 chrX 102631313 102631572 -59968358 - AluSx SINE Alu -28 284 31 5080 149 37 14 chrX 102631572 102631965 -59967965 - L1MB3 LINE L1 -500 5683 5255 28 29 0 0 chrX 102632108 102632143 -59967787 + AT_rich Low_complexity Low_complexity 1 35 0 1001 132 0 0 chrX 102632147 102632283 -59967647 + AluJb SINE Alu 150 285 -27 219 36 0 0 chrX 102632285 102632313 -59967617 + (TA)n Simple_repeat Simple_repeat 2 29 0 443 157 0 0 chrX 102632313 102632383 -59967547 - L1M3 LINE L1 -448 5723 5654 36 70 0 0 chrX 102632383 102632454 -59967476 + AT_rich Low_complexity Low_complexity 1 71 0 549 304 70 15 chrX 102633292 102633493 -59966437 - MIR SINE MIR -35 227 16 22 0 0 0 chrX 102634358 102634380 -59965550 + AT_rich Low_complexity Low_complexity 1 22 0 574 316 101 9 chrX 102634890 102635108 -59964822 - MIR SINE MIR -10 252 15 988 265 80 51 chrX 102635153 102635533 -59964397 - MLT1J LTR MaLR -36 475 78 2003 199 0 3 chrX 102635533 102635899 -59964031 + MLT1A1 LTR MaLR 1 365 0 988 265 80 51 chrX 102635899 102635971 -59963959 - MLT1J LTR MaLR -433 78 10 281 290 122 0 chrX 102638192 102638299 -59961631 + MIR SINE MIR 122 241 -21 182 360 0 0 chrX 102638658 102638708 -59961222 - L2 LINE L2 -18 3295 3246 1709 128 36 56 chrX 102638737 102639041 -59960889 - AluJb SINE Alu -14 298 1 306 248 231 50 chrX 102640170 102640291 -59959639 - MIR SINE MIR -58 204 62 315 303 40 51 chrX 102640360 102640535 -59959395 - L2 LINE L2 -5 3308 3136 576 0 0 0 chrX 102640639 102640703 -59959227 + (TC)n Simple_repeat Simple_repeat 1 64 0 808 235 125 26 chrX 102640781 102641045 -59958885 - L2 LINE L2 -1 3312 3023 546 330 62 34 chrX 102641242 102641429 -59958501 - L2 LINE L2 -2395 919 739 309 266 32 85 chrX 102641429 102641617 -59958313 - MER5B DNA MER1_type 0 178 1 546 330 62 34 chrX 102641617 102641784 -59958146 - L2 LINE L2 -2575 739 555 462 293 78 16 chrX 102642573 102642764 -59957166 + MIR SINE MIR 46 248 -14 1705 118 19 4 chrX 102642865 102643127 -59956803 - L1PA16 LINE L1 -9 6157 5892 22 56 0 0 chrX 102643844 102643880 -59956050 + AT_rich Low_complexity Low_complexity 1 36 0 405 186 37 93 chrX 102644331 102644492 -59955438 - L1ME4a LINE L1 -2 6119 5968 743 256 0 0 chrX 102644655 102644811 -59955119 - MIR SINE MIR -13 249 94 290 107 18 0 chrX 102644880 102644936 -59954994 + (CCCTG)n Simple_repeat Simple_repeat 2 58 0 306 256 12 0 chrX 102645465 102645547 -59954383 + MIR3 SINE MIR 75 157 -51 244 212 20 0 chrX 102645833 102645894 -59954036 - MIR SINE MIR -62 146 91 296 325 32 32 chrX 102645955 102646078 -59953852 - MIR3 SINE MIR -54 154 32 363 336 0 49 chrX 102647001 102647144 -59952786 + L2 LINE L2 3137 3272 0 199 311 106 43 chrX 102647454 102647615 -59952315 - MIR SINE MIR -78 184 14 364 324 53 57 chrX 102649794 102649951 -59949979 + MIR3 SINE MIR 31 184 -48 2113 112 0 7 chrX 102650470 102650795 -59949135 - AluSq SINE Alu 0 324 2 637 220 13 0 chrX 102651171 102651321 -59948609 - MER103 DNA DNA -2 164 13 639 308 36 5 chrX 102651611 102651835 -59948095 - MIR SINE MIR -11 251 21 2375 57 0 27 chrX 102652100 102652398 -59947532 + AluY SINE Alu 1 290 -21 922 234 58 5 chrX 102652690 102652895 -59947035 - MIR SINE MIR 0 262 47 714 189 63 84 chrX 102653072 102653262 -59946668 - MER5A DNA MER1_type -3 186 1 1210 143 43 0 chrX 102653411 102653642 -59946288 - L1MA7 LINE L1 -2 6289 6049 540 279 100 11 chrX 102653876 102654066 -59945864 + MIR SINE MIR 2 208 -54 2424 103 0 0 chrX 102655786 102656098 -59943832 + AluSx SINE Alu 1 312 0 27 0 0 0 chrX 102656205 102656232 -59943698 + AT_rich Low_complexity Low_complexity 1 27 0 241 231 140 35 chrX 102656302 102656445 -59943485 - L1ME LINE L1 -212 5909 5752 223 356 42 17 chrX 102658474 102658592 -59941338 - L2 LINE L2 -14 3299 3179 826 42 127 0 chrX 102658947 102659065 -59940865 - MER85 DNA T2_type -6 133 1 252 367 67 27 chrX 102659077 102659227 -59940703 + L2 LINE L2 3117 3272 0 673 299 94 8 chrX 102659436 102659670 -59940260 - MIR SINE MIR -1 261 8 849 208 6 17 chrX 102659670 102659848 -59940082 - MER5B DNA MER1_type -1 177 2 326 302 0 0 chrX 102660539 102660645 -59939285 + MIR SINE MIR 148 253 -9 343 353 44 0 chrX 102661594 102661730 -59938200 - MIR SINE MIR -120 142 1 270 194 32 65 chrX 102661794 102661856 -59938074 - L3 LINE CR1 -13 1564 1505 329 231 77 69 chrX 102662026 102662156 -59937774 - MIR SINE MIR -87 175 45 324 279 147 16 chrX 102662674 102662803 -59937127 - MIR3 SINE MIR -31 177 32 245 259 0 0 chrX 102662924 102662978 -59936952 + MLT1I LTR MaLR 81 134 -275 3041 19 0 3 chrX 102662978 102663578 -59936352 - L1P1 LINE L1 -530 5625 5027 4916 33 0 0 chrX 102663578 102664150 -59935780 + L1PA3 LINE L1 5579 6155 0 768 266 85 30 chrX 102664157 102664428 -59935502 + MLT1I LTR MaLR 124 409 0 512 262 29 17 chrX 102664432 102664604 -59935326 + Charlie8 DNA MER1_type 55 228 -2189 247 250 0 0 chrX 102664704 102664756 -59935174 + Charlie8 DNA MER1_type 1374 1425 -992 479 321 45 32 chrX 102666869 102667115 -59932815 - L2 LINE L2 -212 3060 2812 185 212 61 61 chrX 102667229 102667295 -59932635 + L2 LINE L2 2162 2227 -1087 211 363 37 44 chrX 102668129 102668264 -59931666 + L2 LINE L2 3137 3270 -2 1283 179 12 4 chrX 102668904 102669150 -59930780 - MLT1D LTR MaLR 0 505 258 359 264 136 39 chrX 102670415 102670570 -59929360 + MIR SINE MIR 4 173 -89 4005 112 11 3 chrX 102670628 102671244 -59928686 - MER39B LTR ERV1 -32 621 1 940 258 64 4 chrX 102671301 102671534 -59928396 + MIR SINE MIR 2 248 -14 873 311 91 27 chrX 102671599 102671797 -59928133 - L2 LINE L2 -831 2483 2299 2358 48 41 0 chrX 102671797 102672087 -59927843 + AluY SINE Alu 1 302 -9 873 311 91 27 chrX 102672087 102672374 -59927556 - L2 LINE L2 -1015 2299 1967 299 330 107 21 chrX 102672375 102672608 -59927322 - L2 LINE L2 -1498 1816 1564 280 191 0 0 chrX 102672629 102672676 -59927254 + MIR SINE MIR 203 249 -13 477 153 24 0 chrX 102672868 102672953 -59926977 - Tigger5 DNA MER2_type 0 2323 2237 523 193 0 0 chrX 102672963 102673051 -59926879 + Tigger5 DNA MER2_type 1 88 -2235 380 355 45 7 chrX 102674349 102674573 -59925357 + MIR SINE MIR 2 231 -31 7231 94 4 14 chrX 102674963 102676830 -59923100 - L1PA7 LINE L1 0 6154 4303 5476 25 3 0 chrX 102676830 102677467 -59922463 - L1PA2 LINE L1 -3 6152 5510 7603 100 7 2 chrX 102677467 102678641 -59921289 - L1PA7 LINE L1 -1851 4295 3116 482 246 120 6 chrX 102679460 102679635 -59920295 - MLT1H LTR MaLR 0 595 346 14068 141 14 109 chrX 102679856 102683307 -59916623 - L1P LINE L1 -3012 3134 11 506 290 98 40 chrX 102683539 102683763 -59916167 - MIR SINE MIR -6 256 20 354 311 60 13 chrX 102684372 102684523 -59915407 + MIR SINE MIR 50 207 -55 1102 248 0 4 chrX 102685049 102685279 -59914651 - MIR SINE MIR -5 257 29 30 45 0 0 chrX 102685984 102686028 -59913902 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chrX 102686677 102686707 -59913223 + AT_rich Low_complexity Low_complexity 1 30 0 1170 180 0 10 chrX 102686856 102687072 -59912858 - AluJo SINE Alu 0 306 93 3514 104 10 0 chrX 102689771 102690289 -59909641 + L1MA2 LINE L1 5782 6304 0 28066 131 16 67 chrX 102690441 102692562 -59907368 - L1PA8 LINE L1 0 6172 3943 2170 126 3 0 chrX 102692562 102692871 -59907059 - AluSx SINE Alu -2 310 1 28066 131 16 67 chrX 102692871 102694398 -59905532 - L1PA8 LINE L1 -2229 3943 2339 2189 102 0 48 chrX 102694398 102694712 -59905218 - AluSp SINE Alu -14 299 1 28066 131 16 67 chrX 102694712 102697579 -59902351 - L1PA8 LINE L1 -3833 2339 3 393 173 25 0 chrX 102698139 102698220 -59901710 + MER103 DNA DNA 59 141 -25 1270 160 0 57 chrX 102698221 102698465 -59901465 + MER30 DNA MER1_type 1 230 0 303 316 53 26 chrX 102698571 102698685 -59901245 + MIR3 SINE MIR 43 159 -49 2321 138 77 2 chrX 102699081 102699495 -59900435 - MER65A LTR ERV1 0 445 1 1398 283 7 26 chrX 102699495 102699922 -59900008 - MER65A-int LTR ERV1 0 4871 4453 10380 40 4 0 chrX 102699922 102701965 -59897965 - L1PA5 LINE L1 -3 6151 4104 854 171 151 96 chrX 102701983 102702132 -59897798 - MER65A-int LTR ERV1 -3309 3289 3150 378 0 0 0 chrX 102702132 102702174 -59897756 + (TA)n Simple_repeat Simple_repeat 1 42 0 854 171 151 96 chrX 102702174 102702513 -59897417 - MER65A-int LTR ERV1 -3448 3150 1546 24 32 0 0 chrX 102702534 102702565 -59897365 + AT_rich Low_complexity Low_complexity 1 31 0 11902 99 29 33 chrX 102702618 102702729 -59897201 - MER65A-int LTR ERV1 -2377 2494 2384 1576 142 0 125 chrX 102702729 102703066 -59896864 - AluJb SINE Alu -11 301 7 11902 99 29 33 chrX 102703066 102705398 -59894532 - MER65A-int LTR ERV1 -2487 2384 11 2162 151 122 7 chrX 102705398 102705808 -59894122 - MSTB2 LTR MaLR 0 457 1 2579 142 18 9 chrX 102705848 102706285 -59893645 - MER65A LTR ERV1 -4 441 1 1523 240 62 37 chrX 102706290 102706723 -59893207 - LTR16A1 LTR ERVL -13 444 1 191 210 48 81 chrX 102706818 102706880 -59893050 - L2 LINE L2 -8 3305 3246 2582 11 0 0 chrX 102707366 102707646 -59892284 + AluY SINE Alu 23 302 -9 559 302 33 58 chrX 102709286 102709404 -59890526 + MIR SINE MIR 8 118 -144 1647 156 56 17 chrX 102709404 102709692 -59890238 - AluJb SINE Alu -13 299 1 559 302 33 58 chrX 102709692 102709815 -59890115 + MIR SINE MIR 118 243 -19 341 260 39 39 chrX 102713169 102713296 -59886634 + MIR SINE MIR 100 226 -36 1179 140 53 18 chrX 102714259 102714487 -59885443 - MER46A DNA MER2_type 0 236 1 387 289 59 30 chrX 102715015 102715150 -59884780 - L2 LINE L2 -12 3260 3122 374 229 0 0 chrX 102715155 102715225 -59884705 + Tigger5 DNA MER2_type 2 71 -2252 229 200 60 0 chrX 102715235 102715285 -59884645 - Tigger5 DNA MER2_type -3 2320 2268 * 259 226 57 0 chrX 102715242 102715295 -59884635 + Tigger5 DNA MER2_type 2268 2323 0 1330 208 112 10 chrX 102715332 102715644 -59884286 + MER2 DNA MER2_type 2 345 0 357 359 77 14 chrX 102715655 102715875 -59884055 - L2 LINE L2 -213 3059 2826 1999 181 31 3 chrX 102716053 102716412 -59883518 + MLT1B LTR MaLR 21 389 -1 22 0 0 0 chrX 102716452 102716474 -59883456 + AT_rich Low_complexity Low_complexity 1 22 0 241 342 32 32 chrX 102716535 102716693 -59883237 - L2 LINE L2 -539 2775 2618 1590 137 8 4 chrX 102718242 102718491 -59881439 + MLT2A2 LTR ERVL 2 251 -202 3451 81 13 15 chrX 102718491 102718960 -59880970 + HERVL-A2 LTR ERVL 1868 2335 -3319 1381 125 14 0 chrX 102718968 102719184 -59880746 + HERVL-A2 LTR ERVL 5436 5654 0 2060 169 37 31 chrX 102719184 102719730 -59880200 + MLT2A2 LTR ERVL 1 554 0 547 328 47 0 chrX 102719918 102720153 -59879777 - MER112 DNA MER1_type -3 257 12 907 271 9 0 chrX 102720153 102720371 -59879559 + MER58A DNA MER1_type 3 222 -2 1743 76 0 9 chrX 102720760 102720984 -59878946 + AluY SINE Alu 84 305 -6 534 301 65 45 chrX 102721265 102721574 -59878356 - L2 LINE L2 -433 2881 2567 284 348 204 0 chrX 102721640 102721841 -59878089 - L2 LINE L2 -454 2860 2619 993 138 37 41 chrX 102722935 102723181 -59876749 - L1MA7 LINE L1 0 6291 6047 1075 58 0 0 chrX 102723281 102723420 -59876510 - L1PA4 LINE L1 -1 6154 6016 441 234 28 0 chrX 102723885 102723992 -59875938 - MIR SINE MIR 0 262 153 599 214 200 29 chrX 102724112 102724322 -59875608 - MIR SINE MIR 0 262 17 308 289 12 0 chrX 102725147 102725230 -59874700 + MIR3 SINE MIR 108 191 -17 241 314 124 9 chrX 102725605 102725710 -59874220 + L2 LINE L2 3186 3302 -11 327 328 78 22 chrX 102725758 102725938 -59873992 + L1MEd LINE L1 12 201 -5918 716 174 27 54 chrX 102726016 102726220 -59873710 - MER69 DNA AcHobo 0 2526 1 940 207 217 30 chrX 102726800 102727104 -59872826 - MLT1A1 LTR MaLR 0 365 5 982 272 98 14 chrX 102727157 102727503 -59872427 - MLT1I LTR MaLR -16 393 19 342 0 0 0 chrX 102728003 102728041 -59871889 + (TC)n Simple_repeat Simple_repeat 2 39 0 342 268 101 36 chrX 102729024 102729162 -59870768 - L2 LINE L2 -20 3293 3147 763 228 22 137 chrX 102729326 102729690 -59870240 + L2 LINE L2 2952 3273 -40 252 0 0 0 chrX 102730442 102730470 -59869460 + (TTA)n Simple_repeat Simple_repeat 3 30 0 5494 25 0 0 chrX 102730470 102731105 -59868825 - L1PA3 LINE L1 -18 6137 5503 1054 39 0 0 chrX 102731105 102731234 -59868696 + L1P LINE L1 3576 3704 -2442 693 268 0 6 chrX 102732032 102732211 -59867719 - MIR SINE MIR 0 262 85 22 0 0 0 chrX 102735311 102735333 -59864597 + AT_rich Low_complexity Low_complexity 1 22 0 248 200 18 0 chrX 102736109 102736164 -59863766 - MLT1H1 LTR MaLR -7 588 533 5968 51 7 3 chrX 102736182 102736920 -59863010 + pTR5 LTR ERV1 393 2468 0 * 31515 101 10 12 chrX 102736920 102741889 -59858041 + HERV30 LTR ERV1 66 5045 -3212 510 92 23 119 chrX 102741882 102742142 -59857788 + Harlequin LTR ERV1 840 1074 -5822 * 10165 76 6 12 chrX 102742141 102743528 -59856402 + Harlequin LTR ERV1 6470 7847 -552 41792 69 4 1 chrX 102743528 102749659 -59850271 - L1PA5 LINE L1 -5 6149 1 4180 98 2 0 chrX 102749659 102750218 -59849712 + Harlequin LTR ERV1 7840 8399 0 4886 88 83 2 chrX 102750218 102750854 -59849076 + LTR12 LTR ERV1 1 688 0 763 236 74 101 chrX 102750951 102751328 -59848602 - MLT1H1 LTR MaLR -188 367 1 22 0 0 0 chrX 102752162 102752184 -59847746 + AT_rich Low_complexity Low_complexity 1 22 0 675 189 60 27 chrX 102753846 102754031 -59845899 - HsTC2 DNA Tc2 -1 1897 1707 358 181 117 11 chrX 102754205 102754299 -59845631 - MLT1I LTR MaLR -25 384 281 * 793 263 42 67 chrX 102754285 102754616 -59845314 - MLT1H LTR MaLR -198 351 29 2576 49 0 3 chrX 102754924 102755231 -59844699 - AluY SINE Alu -1 310 5 771 269 66 31 chrX 102755399 102755626 -59844304 + MIR SINE MIR 21 255 -7 22 35 0 0 chrX 102756578 102756607 -59843323 + AT_rich Low_complexity Low_complexity 1 29 0 379 268 7 85 chrX 102757264 102757293 -59842637 - MIR SINE MIR -90 172 142 2154 136 0 3 chrX 102757293 102757603 -59842327 - AluSx SINE Alu -3 309 1 379 268 7 85 chrX 102757603 102757726 -59842204 - MIR SINE MIR -120 142 32 236 150 33 33 chrX 102757953 102758013 -59841917 - L1MC4 LINE L1 -1339 6703 6644 42338 41 23 8 chrX 102758026 102763560 -59836370 - L1PA2 LINE L1 0 6155 517 180 0 0 0 chrX 102763560 102763580 -59836350 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 42338 41 23 8 chrX 102763580 102764103 -59835827 - L1PA2 LINE L1 -5638 517 3 1621 85 0 0 chrX 102764106 102764305 -59835625 - L1PA7 LINE L1 -13 6141 5943 439 284 82 68 chrX 102764629 102765118 -59834812 + L1M4 LINE L1 3250 3745 -2401 1044 312 125 28 chrX 102765133 102765862 -59834068 + L2 LINE L2 2434 3261 -52 321 109 0 0 chrX 102765862 102765917 -59834013 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 1044 312 125 28 chrX 102765917 102765976 -59833954 + L2 LINE L2 3261 3313 0 449 269 92 14 chrX 102765974 102766115 -59833815 - MIR3 SINE MIR -48 160 9 * 186 337 92 0 chrX 102766568 102766666 -59833264 - L2 LINE L2 -10 3303 3197 21 36 0 0 chrX 102767720 102767748 -59832182 + AT_rich Low_complexity Low_complexity 1 28 0 352 253 52 103 chrX 102767765 102767959 -59831971 + MER5A DNA MER1_type 1 184 -5 26 30 0 0 chrX 102768183 102768216 -59831714 + AT_rich Low_complexity Low_complexity 1 33 0 17245 26 1 1 chrX 102768290 102770984 -59828946 - L1PA3 LINE L1 0 6155 3462 7391 23 0 1 chrX 102871301 102872242 -59727688 - L1PA3 LINE L1 -2927 3219 2280 2917 53 0 10 chrX 102872241 102872637 -59727293 - L1PA3 LINE L1 -5441 705 314 * 1336 57 11 6 chrX 102872650 102872827 -59727103 - AluY SINE Alu -3 308 131 2420 58 3 0 chrX 102872827 102873152 -59726778 - L1PA3 LINE L1 -5816 330 5 455 326 131 5 chrX 102873574 102873795 -59726135 + MIR SINE MIR 2 250 -12 21 36 0 0 chrX 102873981 102874009 -59725921 + AT_rich Low_complexity Low_complexity 1 28 0 239 277 12 0 chrX 102874938 102875021 -59724909 - MARNA DNA Mariner -342 244 161 433 274 129 8 chrX 102876304 102876428 -59723502 - L2 LINE L2 0 3272 3134 1091 164 28 0 chrX 102876480 102876657 -59723273 - FRAM SINE Alu 0 176 1 1783 194 102 15 chrX 102876737 102877149 -59722781 - MER66A LTR ERV1 -3 475 28 269 182 40 0 chrX 102877430 102877529 -59722401 + (TA)n Simple_repeat Simple_repeat 1 103 0 422 244 42 34 chrX 102878171 102878290 -59721640 + MIR SINE MIR 30 149 -59 1825 115 67 0 chrX 102878290 102878412 -59721518 + AluSx SINE Alu 1 113 -199 306 0 0 0 chrX 102878412 102878446 -59721484 + (TG)n Simple_repeat Simple_repeat 2 35 0 1825 115 67 0 chrX 102878446 102878617 -59721313 + AluSx SINE Alu 113 312 0 1768 151 3 36 chrX 102879751 102880055 -59719875 + AluJo SINE Alu 1 294 -18 531 196 0 10 chrX 102880065 102880167 -59719763 + MER45A DNA AcHobo 77 177 -1 27 0 0 0 chrX 102880657 102880684 -59719246 + AT_rich Low_complexity Low_complexity 1 27 0 477 319 43 0 chrX 102882257 102882395 -59717535 - MIR SINE MIR -109 153 10 180 289 0 0 chrX 102882434 102882479 -59717451 - L3 LINE CR1 -450 1127 1083 619 275 36 74 chrX 102883477 102883786 -59716144 + L2 LINE L2 3005 3301 -12 249 33 0 0 chrX 102883788 102883818 -59716112 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 207 182 36 52 chrX 102884761 102884845 -59715085 + MIR3 SINE MIR 97 169 -39 252 59 0 0 chrX 102885885 102885919 -59714011 + (GA)n Simple_repeat Simple_repeat 1 34 0 2445 57 0 0 chrX 102886230 102886561 -59713369 - AluY SINE Alu 0 331 1 291 240 27 0 chrX 102886672 102886747 -59713183 + L1MEd LINE L1 16 92 -6027 918 150 6 58 chrX 102886748 102886921 -59713009 - FRAM SINE Alu -11 165 2 1697 307 94 30 chrX 102886923 102888008 -59711922 + L1MEd LINE L1 87 1241 -4878 704 266 64 46 chrX 102888197 102888633 -59711297 + L1MEd LINE L1 2114 2557 -3572 1086 223 52 31 chrX 102888691 102888982 -59710948 - MER58B DNA MER1_type -43 298 2 3160 275 72 49 chrX 102889051 102890930 -59709000 + L1MEd LINE L1 2659 4610 -1537 405 0 0 0 chrX 102890930 102890975 -59708955 + (TG)n Simple_repeat Simple_repeat 2 46 0 3160 275 72 49 chrX 102890975 102892205 -59707725 + L1MEd LINE L1 4610 5811 -336 2610 150 87 0 chrX 102892239 102892686 -59707244 - MER66B LTR ERV1 0 486 1 41625 128 40 24 chrX 102892686 102893016 -59706914 - MER66A-int LTR ERV1 0 6676 6353 2315 98 0 0 chrX 102893016 102893322 -59706608 + AluSx SINE Alu 1 306 -6 41625 128 40 24 chrX 102893322 102899559 -59700371 - MER66A-int LTR ERV1 -323 6353 1 2990 164 0 17 chrX 102899564 102900045 -59699885 - MER66A LTR ERV1 -5 473 1 297 316 78 14 chrX 102900472 102900690 -59699240 + L1MC4a LINE L1 4081 4312 -1834 415 288 176 34 chrX 102900825 102901148 -59698782 + L1MC4a LINE L1 4483 4851 -1295 248 216 49 39 chrX 102901524 102901626 -59698304 + L1MC4a LINE L1 5326 5428 -2380 661 295 56 42 chrX 102901687 102901722 -59698208 + L1MC4a LINE L1 5622 5655 -466 1232 178 19 0 chrX 102901722 102901936 -59697994 + MER20 DNA MER1_type 2 219 0 661 295 56 42 chrX 102901936 102902347 -59697583 + L1MC4a LINE L1 5655 6066 -55 4389 192 46 19 chrX 102902563 102903006 -59696924 - L1P LINE L1 -1296 4850 4420 408 20 0 0 chrX 102903006 102903055 -59696875 + (TG)n Simple_repeat Simple_repeat 2 50 0 4389 192 46 19 chrX 102903055 102903078 -59696852 - L1P LINE L1 -1726 4420 4399 1356 149 22 4 chrX 102903078 102903306 -59696624 - L1PA15 LINE L1 0 6165 5934 4389 192 46 19 chrX 102903306 102903841 -59696089 - L1P LINE L1 -1747 4399 3821 1513 126 19 34 chrX 102903841 102904110 -59695820 + L1PA15 LINE L1 5900 6164 -1 207 194 0 97 chrX 102904464 102904526 -59695404 + L2 LINE L2 3257 3312 -1 273 128 92 9 chrX 102905289 102905398 -59694532 + (TA)n Simple_repeat Simple_repeat 1 118 0 568 118 17 39 chrX 102905398 102905576 -59694354 + (TTATA)n Simple_repeat Simple_repeat 5 178 0 310 139 41 25 chrX 102905557 102905679 -59694251 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 * 2279 105 0 10 chrX 102907026 102907339 -59692591 - AluSg SINE Alu 0 310 1 487 301 13 13 chrX 102908188 102908344 -59691586 + MIR SINE MIR 107 262 0 698 330 26 52 chrX 102913605 102914252 -59685678 - L2 LINE L2 -3 3269 2656 796 280 58 16 chrX 102915595 102915838 -59684092 - MIR SINE MIR -9 253 1 2494 208 44 2 chrX 102915933 102916483 -59683447 + L1ME2 LINE L1 5583 6155 -9 180 318 95 0 chrX 102916748 102916811 -59683119 + L2 LINE L2 3154 3222 -50 963 196 9 133 chrX 102916965 102917311 -59682619 + L2 LINE L2 3002 3304 -9 287 330 91 72 chrX 102918158 102918434 -59681496 - L2 LINE L2 -5 3267 2987 3443 284 109 42 chrX 102918593 102919080 -59680850 - L2 LINE L2 0 3272 2819 1115 151 95 98 chrX 102919080 102919405 -59680525 + MER33 DNA MER1_type 1 324 0 3443 284 109 42 chrX 102919405 102920444 -59679486 - L2 LINE L2 -453 2819 1851 1684 164 25 11 chrX 102920444 102920725 -59679205 + AluJo SINE Alu 3 287 -25 3443 284 109 42 chrX 102920725 102920748 -59679182 - L2 LINE L2 -1421 1851 1831 1666 198 10 7 chrX 102920748 102921051 -59678879 - AluJo SINE Alu -8 304 1 3443 284 109 42 chrX 102921051 102921464 -59678466 - L2 LINE L2 -1441 1831 1170 356 269 0 0 chrX 102925823 102925901 -59674029 - MIR SINE MIR -3 259 182 21 36 0 0 chrX 102926592 102926620 -59673310 + AT_rich Low_complexity Low_complexity 1 28 0 270 301 124 0 chrX 102927129 102927242 -59672688 + L2 LINE L2 3177 3303 -10 487 261 183 0 chrX 102927332 102927474 -59672456 + MER5A DNA MER1_type 22 189 0 223 281 62 0 chrX 102929248 102929312 -59670618 - MIR3 SINE MIR -48 160 93 195 328 47 0 chrX 102929496 102929560 -59670370 + L3 LINE CR1 1500 1566 -11 1307 229 128 46 chrX 102929968 102930334 -59669596 - MSTD LTR MaLR 0 396 1 7348 39 3 0 chrX 102930435 102931711 -59668219 + L1PA4 LINE L1 4873 6152 -3 34 42 0 0 chrX 102931914 102931962 -59667968 + AT_rich Low_complexity Low_complexity 1 48 0 502 213 164 0 chrX 102933006 102933128 -59666802 + MIR SINE MIR 15 156 -106 1992 173 165 4 chrX 102933307 102933586 -59666344 - L1MB7 LINE L1 -1 6183 5905 720 199 37 54 chrX 102933586 102933827 -59666103 - L1PB1 LINE L1 -319 5832 5596 471 35 0 0 chrX 102934541 102934598 -59665332 + (TC)n Simple_repeat Simple_repeat 1 57 0 270 0 0 0 chrX 102934597 102934627 -59665303 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 239 196 59 0 chrX 102934963 102935014 -59664916 + MER5A DNA MER1_type 136 189 0 544 93 0 0 chrX 102936132 102936218 -59663712 - L1MA4A LINE L1 -1 6302 6217 15923 88 9 1 chrX 102936266 102939278 -59660652 - L1PA7 LINE L1 0 6154 3125 204 274 151 0 chrX 102940169 102940242 -59659688 + L2 LINE L2 2798 2881 -433 342 297 10 0 chrX 102940563 102940664 -59659266 + MIR SINE MIR 104 205 -57 487 251 13 121 chrX 102941848 102941948 -59657982 + MIR SINE MIR 20 83 -179 1165 222 83 38 chrX 102941948 102942236 -59657694 - AluJo SINE Alu -1 301 1 487 251 13 121 chrX 102942236 102942366 -59657564 + MIR SINE MIR 83 225 -37 422 207 52 67 chrX 102942467 102942602 -59657328 + MIR SINE MIR 130 262 0 202 204 61 0 chrX 102942610 102942659 -59657271 + MIR SINE MIR 211 262 0 215 257 18 124 chrX 102943770 102943883 -59656047 - L2 LINE L2 -3 3269 3169 22 35 0 0 chrX 102944038 102944067 -59655863 + AT_rich Low_complexity Low_complexity 1 29 0 238 179 36 0 chrX 102944086 102944142 -59655788 + (TA)n Simple_repeat Simple_repeat 2 59 0 317 364 51 0 chrX 102945079 102945197 -59654733 + L2 LINE L2 3133 3256 -16 829 245 99 27 chrX 102945248 102945542 -59654388 + L2 LINE L2 2996 3310 -3 1239 126 16 5 chrX 102948159 102948350 -59651580 - MER46A DNA MER2_type 0 236 44 7463 127 16 7 chrX 102948350 102950437 -59649493 + L1MA1 LINE L1 4188 6302 0 386 161 0 0 chrX 102950450 102950512 -59649418 - MER46A DNA MER2_type -174 62 1 181 0 69 0 chrX 102951173 102951202 -59648728 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 43289 41 6 3 chrX 102951205 102957344 -59642586 - L1PA4 LINE L1 -3 6152 1 275 197 227 45 chrX 102957426 102957558 -59642372 - MER103 DNA DNA -10 156 1 244 273 113 0 chrX 102958235 102958325 -59641605 - MIR SINE MIR -66 142 45 291 257 95 9 chrX 102959436 102959541 -59640389 - MIR SINE MIR -6 256 143 * 503 315 215 10 chrX 102959539 102959850 -59640080 + L2 LINE L2 1467 1841 -1473 825 283 41 10 chrX 102960104 102960397 -59639533 + L2 LINE L2 1826 2127 -1187 1176 159 0 5 chrX 102960491 102960686 -59639244 - L1PA15 LINE L1 -2 6163 5970 15830 32 4 1 chrX 102961538 102963467 -59636463 - L1PA3 LINE L1 -1696 4450 2516 8054 30 0 3 chrX 102963468 102965197 -59634733 + L1PA3 LINE L1 4430 6155 0 238 326 0 54 chrX 102966132 102966224 -59633706 + MIR3 SINE MIR 11 97 -111 1777 264 26 47 chrX 102966273 102966932 -59632998 + HAL1 LINE L1 8 652 -1855 1440 233 78 73 chrX 102966914 102967507 -59632423 + HAL1 LINE L1 1860 2458 -49 * 1766 152 3 55 chrX 102967507 102967817 -59632113 - AluJo SINE Alu -17 295 2 1440 233 78 73 chrX 102967817 102967863 -59632067 + HAL1 LINE L1 2458 2502 -5 1364 203 42 3 chrX 102970317 102970628 -59629302 - MER33 DNA MER1_type 0 324 2 661 189 108 0 chrX 102970712 102970860 -59629070 - MER3 DNA MER1_type 0 209 46 6146 125 108 25 chrX 102972540 102973720 -59626210 - MER52C LTR ERV1 0 1278 1 1265 85 6 6 chrX 102973758 102973934 -59625996 + L1PA8A LINE L1 5928 6103 -28 1479 234 117 20 chrX 102973975 102974427 -59625503 - MLT1J LTR MaLR -10 501 6 2081 98 10 0 chrX 102974664 102974970 -59624960 - L1PA8 LINE L1 0 6172 5864 673 91 0 0 chrX 102974979 102975067 -59624863 - L1P3 LINE L1 -6366 95 8 689 299 83 5 chrX 102975315 102975532 -59624398 - MIR SINE MIR 0 262 29 1287 135 4 25 chrX 102975566 102975803 -59624127 - MER6 DNA MER2_type 0 865 634 1020 209 0 0 chrX 102975804 102975981 -59623949 + FRAM SINE Alu 1 172 -4 1192 202 120 2 chrX 102975982 102976108 -59623822 - MER6 DNA MER2_type -245 620 510 282 95 0 0 chrX 102976108 102976150 -59623780 + (CA)n Simple_repeat Simple_repeat 2 43 0 1192 202 120 2 chrX 102976150 102976327 -59623603 - MER6 DNA MER2_type -355 510 1 671 231 8 0 chrX 102976410 102976540 -59623390 - FLAM_A SINE Alu -2 131 1 626 245 50 0 chrX 102976556 102976715 -59623215 - MER3 DNA MER1_type -42 167 1 2128 135 58 9 chrX 102977016 102977364 -59622566 - MLT1A1 LTR MaLR 0 365 1 276 317 52 30 chrX 102978530 102978687 -59621243 + MIR3 SINE MIR 12 173 -35 26 0 0 0 chrX 102979056 102979082 -59620848 + AT_rich Low_complexity Low_complexity 1 26 0 287 297 0 0 chrX 102979612 102979676 -59620254 + L2 LINE L2 3191 3254 -18 2079 112 7 18 chrX 102979720 102979904 -59620026 - AluSx SINE Alu 0 317 136 2435 63 0 10 chrX 102979904 102980206 -59619724 - AluY SINE Alu -12 299 1 2079 112 7 18 chrX 102980206 102980341 -59619589 - AluSx SINE Alu -181 136 1 188 179 26 0 chrX 102980551 102980590 -59619340 + L2 LINE L2 3270 3309 -4 447 169 14 0 chrX 102980862 102980933 -59618997 - Tigger2 DNA MER2_type -10 2708 2637 5207 116 14 35 chrX 102980940 102981475 -59618455 - L1MA3 LINE L1 -11 6294 5784 2159 126 7 0 chrX 102981475 102981784 -59618146 - AluSx SINE Alu -1 311 1 5207 116 14 35 chrX 102981784 102982135 -59617795 - L1MA3 LINE L1 -521 5784 5427 9297 162 52 15 chrX 102982163 102985427 -59614503 - L1 LINE L1 -2099 5466 2078 655 252 21 0 chrX 102985428 102985571 -59614359 - L1 LINE L1 -7256 309 164 4365 175 45 8 chrX 102985572 102986325 -59613605 - L1M1 LINE L1 -5490 2075 1295 694 193 23 29 chrX 102986323 102986494 -59613436 - L1 LINE L1 -7387 178 9 * 1575 155 106 6 chrX 102986494 102986842 -59613088 - Tigger2 DNA MER2_type -63 2655 2273 21 0 0 0 chrX 102987321 102987342 -59612588 + AT_rich Low_complexity Low_complexity 1 21 0 249 254 0 0 chrX 102989163 102989234 -59610696 + (CA)n Simple_repeat Simple_repeat 2 72 0 397 274 9 35 chrX 102989253 102989366 -59610564 - MER5B DNA MER1_type -68 110 1 653 208 21 14 chrX 102989422 102989566 -59610364 - MIR SINE MIR -6 256 112 243 267 0 0 chrX 102989728 102989803 -59610127 + (CA)n Simple_repeat Simple_repeat 2 76 0 472 245 88 20 chrX 102990290 102990451 -59609479 + MIR3 SINE MIR 28 197 -11 33 43 0 0 chrX 102991243 102991290 -59608640 + AT_rich Low_complexity Low_complexity 1 47 0 2163 111 0 0 chrX 102992390 102992669 -59607261 + AluSx SINE Alu 24 302 -10 225 0 0 0 chrX 102992685 102992710 -59607220 + (TG)n Simple_repeat Simple_repeat 2 26 0 674 204 46 0 chrX 102992867 102993019 -59606911 + MER3 DNA MER1_type 9 167 -42 4131 170 38 5 chrX 102993029 102993952 -59605978 + L1MA7 LINE L1 4168 5120 -1026 1913 166 36 11 chrX 102993952 102994314 -59605616 + THE1C LTR MaLR 1 371 -4 1715 115 4 4 chrX 102994320 102994589 -59605341 + THE1C-int LTR MaLR 3 271 -1309 2651 75 8 47 chrX 102994592 102994994 -59604936 - L1PA7 LINE L1 0 6154 5769 41791 39 3 1 chrX 102995001 103001105 -59598825 - L1PA4 LINE L1 -2 6153 32 2018 70 0 0 chrX 103001128 103001399 -59598531 + L1P3 LINE L1 5496 5766 -388 8879 83 6 10 chrX 103001417 103003295 -59596635 - L1PA7 LINE L1 -261 5893 4031 5520 100 12 1 chrX 103003542 103004389 -59595541 - L1PA7 LINE L1 -2102 4044 3189 7481 141 16 47 chrX 103004413 103005921 -59594009 + L1P LINE L1 678 2138 -4008 5027 143 0 15 chrX 103005922 103006743 -59593187 + THE1C-int LTR MaLR 772 1580 0 * 5246 137 43 20 chrX 103006731 103006743 -59593187 + L1MA7 LINE L1 5104 5114 -1177 2064 153 24 19 chrX 103006743 103007116 -59592814 + THE1C LTR MaLR 1 375 0 5246 137 43 20 chrX 103007116 103007630 -59592300 + L1MA7 LINE L1 5114 5615 -676 2270 156 30 28 chrX 103007630 103008061 -59591869 - Tigger2a DNA MER2_type 0 434 3 5246 137 43 20 chrX 103008061 103008216 -59591714 + L1MA7 LINE L1 5615 5765 -526 207 0 0 0 chrX 103008216 103008239 -59591691 + (CA)n Simple_repeat Simple_repeat 2 24 0 5246 137 43 20 chrX 103008239 103008650 -59591280 + L1MA7 LINE L1 5765 6234 -57 231 114 0 0 chrX 103008650 103008685 -59591245 + (TG)n Simple_repeat Simple_repeat 2 36 0 5246 137 43 20 chrX 103008685 103008745 -59591185 + L1MA7 LINE L1 6234 6291 0 29 0 0 0 chrX 103008745 103008774 -59591156 + AT_rich Low_complexity Low_complexity 1 29 0 309 252 206 45 chrX 103008896 103009051 -59590879 - MIR SINE MIR -51 211 32 311 336 0 25 chrX 103009128 103009247 -59590683 + MIR SINE MIR 48 163 -99 507 250 43 0 chrX 103009573 103009689 -59590241 + MIR SINE MIR 32 152 -110 433 234 262 7 chrX 103011639 103011780 -59588150 - MIR SINE MIR -16 246 70 218 306 0 16 chrX 103011965 103012027 -59587903 + GA-rich Low_complexity Low_complexity 6 66 0 1199 187 30 25 chrX 103012148 103012383 -59587547 + MER8 DNA MER2_type 1 236 -3 535 257 9 0 chrX 103013399 103013512 -59586418 - MER81 DNA DNA 0 114 1 532 318 26 10 chrX 103013621 103013813 -59586117 + L2 LINE L2 3119 3313 0 187 286 163 20 chrX 103013815 103013913 -59586017 + MIR SINE MIR 95 206 -56 214 261 106 28 chrX 103013984 103014126 -59585804 - MIR SINE MIR 0 262 110 232 245 19 0 chrX 103014148 103014201 -59585729 - MER21A LTR ERV1 -195 736 683 1359 262 82 23 chrX 103014203 103014642 -59585288 - MER77 LTR ERV1 -9 596 132 257 292 146 0 chrX 103014711 103014800 -59585130 - MIR SINE MIR -142 120 19 237 139 0 0 chrX 103015127 103015170 -59584760 + (CA)n Simple_repeat Simple_repeat 1 43 0 535 317 34 24 chrX 103015695 103015900 -59584030 + MIR SINE MIR 1 207 -55 524 266 40 0 chrX 103016074 103016198 -59583732 + MIR SINE MIR 30 158 -104 242 200 17 17 chrX 103016328 103016388 -59583542 + (TA)n Simple_repeat Simple_repeat 1 60 0 3290 228 45 20 chrX 103016388 103017407 -59582523 - L1M4 LINE L1 -1239 4907 3863 * 4075 182 28 18 chrX 103017404 103018834 -59581096 + L1MB7 LINE L1 4741 6181 -3 21 0 0 0 chrX 103018852 103018873 -59581057 + AT_rich Low_complexity Low_complexity 1 21 0 2458 68 3 0 chrX 103019002 103019310 -59580620 + AluY SINE Alu 1 309 -2 298 329 0 0 chrX 103020974 103021059 -59578871 - L2 LINE L2 0 3272 3188 2158 179 44 12 chrX 103021179 103021409 -59578521 - MSTB LTR MaLR 0 426 176 2583 48 0 6 chrX 103021409 103021721 -59578209 - AluY SINE Alu -1 310 1 2158 179 44 12 chrX 103021721 103021897 -59578033 - MSTB LTR MaLR -250 176 7 1656 119 90 32 chrX 103021928 103022239 -59577691 + MER44D DNA MER2_type 11 609 0 21 0 0 0 chrX 103023961 103023982 -59575948 + AT_rich Low_complexity Low_complexity 1 21 0 295 106 21 0 chrX 103024422 103024469 -59575461 - MLT2D LTR ERVL 0 414 367 486 202 0 0 chrX 103024612 103024711 -59575219 - MLT2B1 LTR ERVL -40 480 382 951 253 60 14 chrX 103024713 103024994 -59574936 - L2 LINE L2 -688 2626 2333 221 295 16 0 chrX 103025033 103025094 -59574836 + L2 LINE L2 3211 3272 0 191 36 36 0 chrX 103026585 103026613 -59573317 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 315 311 92 18 chrX 103026614 103026778 -59573152 - L2 LINE L2 -12 3301 3126 188 296 141 67 chrX 103026903 103027038 -59572892 + L2 LINE L2 3169 3313 0 * 204 217 22 98 chrX 103027028 103027120 -59572810 - MIR SINE MIR -61 201 117 690 286 0 0 chrX 103027174 103027349 -59572581 - MIR SINE MIR -2 260 86 311 308 131 0 chrX 103027520 103027627 -59572303 - MIR SINE MIR -70 138 18 544 277 0 0 chrX 103028253 103028383 -59571547 + MIR SINE MIR 15 144 -118 23 54 0 0 chrX 103028393 103028430 -59571500 + AT_rich Low_complexity Low_complexity 1 37 0 323 264 47 9 chrX 103028668 103028774 -59571156 + MIR SINE MIR 153 262 0 338 344 94 0 chrX 103028832 103028960 -59570970 - L2 LINE L2 -17 3255 3116 308 305 9 19 chrX 103029236 103029343 -59570587 + MIR SINE MIR 20 123 -102 1540 311 192 34 chrX 103029713 103030275 -59569655 + L2 LINE L2 1848 2320 -952 1766 168 3 34 chrX 103030275 103030596 -59569334 - AluSx SINE Alu -1 311 1 1540 311 192 34 chrX 103030596 103031257 -59568673 + L2 LINE L2 2320 3263 -9 2404 165 25 6 chrX 103031257 103031736 -59568194 + L1MB7 LINE L1 5688 6175 -9 1540 311 192 34 chrX 103031736 103031748 -59568182 + L2 LINE L2 3263 3272 0 224 240 20 0 chrX 103031913 103031963 -59567967 - L3b LINE CR1 -4 1579 1529 * 531 295 23 35 chrX 103031932 103032105 -59567825 - MIR3 SINE MIR -28 180 10 286 228 13 20 chrX 103032168 103032262 -59567668 - MLT1J LTR MaLR -351 95 1 2163 119 3 19 chrX 103032616 103032927 -59567003 + AluSg SINE Alu 4 309 -1 21 36 0 0 chrX 103032953 103032981 -59566949 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chrX 103033045 103033076 -59566854 + AT_rich Low_complexity Low_complexity 1 31 0 241 143 0 0 chrX 103033078 103033120 -59566810 + Alu SINE Alu 1 42 -260 317 344 33 8 chrX 103035855 103035977 -59563953 + MIR SINE MIR 20 144 -118 1956 163 11 17 chrX 103035983 103036344 -59563586 + MLT1A1 LTR MaLR 7 365 0 298 312 0 0 chrX 103036851 103036928 -59563002 + MIR SINE MIR 167 243 -19 4319 96 178 85 chrX 103036980 103038230 -59561700 - pTR5 LTR ERV1 0 2438 343 321 340 140 0 chrX 103038231 103038381 -59561549 + MIR SINE MIR 91 261 -1 2468 97 22 19 chrX 103039439 103039801 -59560129 + THE1C LTR MaLR 13 375 0 800 239 51 20 chrX 103041866 103042063 -59557867 - MIR SINE MIR -39 223 21 375 346 31 0 chrX 103044685 103044812 -59555118 - L2 LINE L2 0 3313 3183 23 0 0 0 chrX 103046455 103046478 -59553452 + AT_rich Low_complexity Low_complexity 1 23 0 543 269 56 6 chrX 103046487 103046647 -59553283 + LTR16B LTR ERVL 297 464 0 207 125 18 36 chrX 103046868 103046924 -59553006 + CT-rich Low_complexity Low_complexity 2 56 0 478 225 9 36 chrX 103047151 103047262 -59552668 + L2 LINE L2 3163 3270 -2 1103 194 90 14 chrX 103047602 103047824 -59552106 - MER8 DNA MER2_type 0 239 1 616 319 194 7 chrX 103047909 103048182 -59551748 - L3 LINE CR1 -2 1575 1252 185 365 76 28 chrX 103049437 103049582 -59550348 - MIR3 SINE MIR -6 202 51 257 364 55 0 chrX 103050403 103050568 -59549362 - L1MC4a LINE L1 -1880 5928 5755 1636 198 3 64 chrX 103051042 103051431 -59548499 - MLT1A1 LTR MaLR 0 365 1 235 348 0 37 chrX 103051772 103051907 -59548023 + L2 LINE L2 2724 2853 -461 618 274 172 5 chrX 103051950 103052165 -59547765 - MIR SINE MIR -1 261 11 398 264 71 39 chrX 103052167 103052349 -59547581 - MER5A DNA MER1_type 0 189 2 418 254 142 65 chrX 103052358 103052527 -59547403 - MER5A DNA MER1_type 0 189 8 369 360 20 0 chrX 103052914 103053061 -59546869 - MIR3 SINE MIR -14 194 45 180 0 0 0 chrX 103053088 103053108 -59546822 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 1029 202 89 83 chrX 103053234 103053570 -59546360 - MER58B DNA MER1_type -2 339 2 28 0 0 0 chrX 103054216 103054244 -59545686 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrX 103055369 103055393 -59544537 + AT_rich Low_complexity Low_complexity 1 24 0 1928 171 43 3 chrX 103055541 103055892 -59544038 - MLT1A1 LTR MaLR 0 365 1 365 257 0 0 chrX 103056342 103056416 -59543514 - L2 LINE L2 0 3272 3199 209 343 69 10 chrX 103057526 103057628 -59542302 + L2 LINE L2 3190 3297 -16 996 216 20 0 chrX 103059134 103059338 -59540592 - MER3 DNA MER1_type -1 208 1 1926 149 0 24 chrX 103059740 103060035 -59539895 + AluJo SINE Alu 1 288 -24 186 143 0 0 chrX 103060430 103060465 -59539465 + (A)n Simple_repeat Simple_repeat 1 35 0 1556 202 32 9 chrX 103061422 103061764 -59538166 - MLT1A1 LTR MaLR -11 354 5 477 277 45 82 chrX 103062268 103062560 -59537370 + MLT1J LTR MaLR 231 511 0 3792 37 2 0 chrX 103064584 103065041 -59534889 - L1PA4 LINE L1 0 6155 5698 3973 22 0 0 chrX 103065041 103065629 -59534301 + L1PA4 LINE L1 5132 5719 -436 1851 62 0 0 chrX 103065718 103065959 -59533971 + L1PA4 LINE L1 5915 6155 0 432 0 0 0 chrX 103066051 103066099 -59533831 + (TG)n Simple_repeat Simple_repeat 2 49 0 252 357 59 40 chrX 103066402 103066670 -59533260 + L2 LINE L2 2719 2993 -279 197 275 29 29 chrX 103066696 103066765 -59533165 + L2 LINE L2 3245 3313 0 339 295 54 27 chrX 103066923 103067035 -59532895 + L2 LINE L2 3155 3269 -3 2222 152 28 3 chrX 103067788 103068143 -59531787 + MLT1A1 LTR MaLR 1 364 -1 2753 137 27 47 chrX 103068511 103068598 -59531332 - L1MB8 LINE L1 -11 6167 6080 4061 170 37 17 chrX 103068598 103069364 -59530566 - LTR39 LTR ERV1 -2 781 1 2753 137 27 47 chrX 103069364 103069830 -59530100 - L1MB8 LINE L1 -98 6080 5625 1879 185 28 3 chrX 103070664 103071020 -59528910 + MLT1A1 LTR MaLR 1 365 0 621 244 52 10 chrX 103071284 103071476 -59528454 + MIR SINE MIR 6 204 -58 2112 112 0 7 chrX 103071506 103071830 -59528100 + AluSx SINE Alu 1 322 0 28 29 0 0 chrX 103071839 103071874 -59528056 + AT_rich Low_complexity Low_complexity 1 35 0 216 191 0 0 chrX 103073462 103073509 -59526421 + T-rich Low_complexity Low_complexity 1 47 0 2631 119 0 19 chrX 103073696 103074106 -59525824 + L1PB1 LINE L1 5742 6143 -8 1382 235 53 26 chrX 103074583 103074962 -59524968 + MSTD LTR MaLR 8 396 0 225 158 0 0 chrX 103075008 103075046 -59524884 - Alu SINE Alu -7 293 256 681 278 90 39 chrX 103075209 103075421 -59524509 - MIR SINE MIR -4 258 31 6410 86 5 10 chrX 103075421 103076298 -59523632 - MER4D LTR ERV1 0 872 1 681 278 90 39 chrX 103076298 103076319 -59523611 - MIR SINE MIR -231 31 13 224 371 19 41 chrX 103077525 103077792 -59522138 - L2 LINE L2 -584 2730 2470 405 294 49 14 chrX 103078901 103079044 -59520886 + MIR3 SINE MIR 44 191 -17 2279 48 3 60 chrX 103080018 103080332 -59519598 + AluY SINE Alu 3 298 -13 809 259 96 27 chrX 103080341 103080634 -59519296 + L2 LINE L2 2314 2626 -688 416 220 17 76 chrX 103080688 103080806 -59519124 + MIR3 SINE MIR 7 117 -91 623 333 39 0 chrX 103080975 103081182 -59518748 - MIR SINE MIR -8 254 40 278 270 117 29 chrX 103081818 103081955 -59517975 - MIR3 SINE MIR -24 184 36 1456 176 92 8 chrX 103082914 103083202 -59516728 + AluJo SINE Alu 1 310 0 227 291 18 0 chrX 103084110 103084165 -59515765 + MIR SINE MIR 75 130 -78 22 0 0 0 chrX 103084514 103084536 -59515394 + AT_rich Low_complexity Low_complexity 1 22 0 989 188 7 25 chrX 103084650 103084954 -59514976 - MLT1A1 LTR MaLR 0 365 1 952 224 60 0 chrX 103085011 103085212 -59514718 + MER58A DNA MER1_type 12 224 0 457 252 18 18 chrX 103086279 103086390 -59513540 - MER81 DNA DNA -1 113 3 671 268 51 20 chrX 103086629 103086883 -59513047 + MIR SINE MIR 1 262 0 393 269 10 120 chrX 103086932 103087140 -59512790 + L2 LINE L2 2313 2497 -817 688 347 118 24 chrX 103087274 103087861 -59512069 + L2 LINE L2 2444 3079 -193 773 249 106 23 chrX 103087906 103088123 -59511807 + MIR SINE MIR 4 238 -24 399 233 78 0 chrX 103088173 103088289 -59511641 + L2 LINE L2 3188 3312 -1 664 304 27 14 chrX 103089764 103090003 -59509927 - MIR SINE MIR -4 258 16 217 234 106 32 chrX 103090235 103090329 -59509601 + MIR SINE MIR 95 195 -67 296 97 16 97 chrX 103090330 103090371 -59509559 - MLT2D LTR ERVL 0 414 378 351 0 0 0 chrX 103090371 103090410 -59509520 + (TG)n Simple_repeat Simple_repeat 1 39 0 296 97 16 97 chrX 103090410 103090430 -59509500 - MLT2D LTR ERVL -36 378 358 1541 196 96 36 chrX 103090465 103090903 -59509027 - MLT2B1 LTR ERVL -56 464 1 2043 119 0 75 chrX 103091449 103091784 -59508146 - AluSx SINE Alu 0 312 3 21 0 0 0 chrX 103092191 103092212 -59507718 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chrX 103092316 103092352 -59507578 + AT_rich Low_complexity Low_complexity 1 36 0 567 282 81 32 chrX 103092413 103092661 -59507269 - MIR SINE MIR -1 261 2 1921 235 114 16 chrX 103094221 103094782 -59505148 - MLT1E2 LTR MaLR 0 626 11 2139 114 7 3 chrX 103095681 103095988 -59503942 - AluSq SINE Alu -5 308 1 355 162 30 61 chrX 103095988 103096087 -59503843 - HAL1 LINE L1 -2132 375 280 764 238 39 6 chrX 103096927 103097108 -59502822 + MIR SINE MIR 76 262 0 23 54 0 0 chrX 103097754 103097791 -59502139 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chrX 103097931 103097956 -59501974 + AT_rich Low_complexity Low_complexity 1 25 0 307 271 7 104 chrX 103098907 103098977 -59500953 - L2 LINE L2 -287 3026 2976 3538 124 9 17 chrX 103098977 103099508 -59500422 + MER1A DNA MER1_type 1 527 0 307 271 7 104 chrX 103099508 103099581 -59500349 - L2 LINE L2 -337 2976 2897 25 83 0 0 chrX 103099688 103099748 -59500182 + AT_rich Low_complexity Low_complexity 1 60 0 13989 170 17 19 chrX 103099801 103102010 -59497920 - L1MA4A LINE L1 -8 7357 5145 2276 128 0 0 chrX 103102010 103102322 -59497608 + AluSq SINE Alu 1 312 -1 13989 170 17 19 chrX 103102322 103103738 -59496192 - L1MA4A LINE L1 -2220 5145 3742 2484 61 6 10 chrX 103103738 103104049 -59495881 + AluY SINE Alu 1 310 -1 13989 170 17 19 chrX 103104049 103104718 -59495212 - L1MA4A LINE L1 -3623 3742 3073 4685 226 78 53 chrX 103104708 103106258 -59493672 - L1MA4A LINE L1 -5621 1588 1 * 25 31 0 0 chrX 103106339 103106371 -59493559 + AT_rich Low_complexity Low_complexity 1 32 0 225 226 33 44 chrX 103106378 103106559 -59493371 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 473 168 110 0 chrX 103106665 103106820 -59493110 - MER20B DNA MER1_type -45 738 567 196 250 0 0 chrX 103106904 103106948 -59492982 - MIR SINE MIR -15 247 204 228 362 125 20 chrX 103107471 103107623 -59492307 - MIR3 SINE MIR -39 169 2 1029 182 169 43 chrX 103107860 103108162 -59491768 - MER2 DNA MER2_type -3 341 2 860 149 48 0 chrX 103108660 103108848 -59491082 + L1MA8 LINE L1 5307 5503 -788 461 261 206 22 chrX 103109116 103109392 -59490538 - L1ME4a LINE L1 -37 6084 5758 382 153 59 0 chrX 103109392 103109477 -59490453 + L1MA8 LINE L1 5472 5561 -739 2594 151 41 0 chrX 103109477 103109959 -59489971 + L1MA8 LINE L1 5782 6285 -6 253 319 76 38 chrX 103109974 103110212 -59489718 - L2 LINE L2 -685 2629 2383 1670 119 39 80 chrX 103111169 103111480 -59488450 - AluSx SINE Alu -8 304 7 729 318 4 29 chrX 103111884 103112129 -59487801 + MIR SINE MIR 10 248 -14 2080 124 3 0 chrX 103113165 103113470 -59486460 - AluSx SINE Alu 0 306 1 21 36 0 0 chrX 103115432 103115460 -59484470 + AT_rich Low_complexity Low_complexity 1 28 0 597 204 123 12 chrX 103116788 103116950 -59482980 + MIR SINE MIR 2 181 -27 298 250 0 0 chrX 103117291 103117351 -59482579 + MIR SINE MIR 159 218 -44 2420 100 0 0 chrX 103117955 103118264 -59481666 + AluSx SINE Alu 1 309 -3 184 317 0 33 chrX 103118564 103118624 -59481306 - L2 LINE L2 -61 3211 3154 184 289 0 0 chrX 103118759 103118804 -59481126 + L3 LINE CR1 1530 1574 -3 373 338 73 17 chrX 103119604 103119713 -59480217 - L1MC4a LINE L1 -1866 5942 5840 3539 105 39 8 chrX 103119713 103120246 -59479684 - L1PA15 LINE L1 -3 6162 5613 373 338 73 17 chrX 103120246 103120370 -59479560 - L1MC4a LINE L1 -1968 5840 5696 5058 171 53 21 chrX 103120389 103121476 -59478454 - L1MC3 LINE L1 -8 7777 6656 2000 132 4 0 chrX 103122585 103122865 -59477065 + AluSx SINE Alu 1 281 -31 237 33 0 0 chrX 103122865 103122895 -59477035 + (CA)n Simple_repeat Simple_repeat 1 30 0 3881 239 50 100 chrX 103124464 103125371 -59474559 + L2 LINE L2 829 1765 -1549 546 179 0 0 chrX 103125371 103125483 -59474447 + L1MA10 LINE L1 6223 6334 0 3881 239 50 100 chrX 103125483 103125830 -59474100 + L2 LINE L2 1765 2127 -1187 261 259 136 0 chrX 103125832 103125913 -59474017 - Charlie8 DNA MER1_type -2235 182 91 467 281 0 0 chrX 103126643 103126739 -59473191 + MIR SINE MIR 18 113 -149 1293 281 61 79 chrX 103126952 103127262 -59472668 - L2 LINE L2 -105 3208 2894 2289 109 3 3 chrX 103127262 103127574 -59472356 + AluSx SINE Alu 1 312 0 1293 281 61 79 chrX 103127574 103128094 -59471836 - L2 LINE L2 -419 2894 2381 200 211 0 0 chrX 103128179 103128217 -59471713 + (CTA)n Simple_repeat Simple_repeat 1 38 0 567 262 107 0 chrX 103128257 103128425 -59471505 - MIR SINE MIR -76 186 1 223 265 0 0 chrX 103129137 103129186 -59470744 - L2 LINE L2 -2 3311 3263 192 326 41 20 chrX 103129985 103130083 -59469847 - L2 LINE L2 -303 2969 2870 920 181 0 57 chrX 103132392 103132602 -59467328 + MER20 DNA MER1_type 22 219 0 19524 104 12 11 chrX 103133642 103140067 -59459863 + L1PA8 LINE L1 10 6473 -14 235 252 9 90 chrX 103141751 103141862 -59458068 + (CGGGG)n Simple_repeat Simple_repeat 3 104 0 676 246 87 0 chrX 103143039 103143222 -59456708 - MER58A DNA MER1_type -4 220 22 455 247 98 64 chrX 103143385 103143733 -59456197 - MER57A LTR ERV1 -52 351 1 705 308 158 37 chrX 103144533 103144825 -59455105 - L2 LINE L2 -650 2664 2409 2165 128 0 0 chrX 103144825 103145123 -59454807 + AluSx SINE Alu 1 298 -14 705 308 158 37 chrX 103145123 103145311 -59454619 - L2 LINE L2 -905 2409 2126 715 340 82 62 chrX 103145559 103146432 -59453498 - L2 LINE L2 -645 2669 1779 529 248 50 126 chrX 103147453 103147514 -59452416 - MIR SINE MIR -14 248 184 1923 212 51 41 chrX 103147514 103147622 -59452308 + LTR40a LTR ERVL 1 106 -413 2021 110 37 0 chrX 103147622 103147935 -59451995 - AluSx SINE Alu 0 323 1 1923 212 51 41 chrX 103147935 103148334 -59451596 + LTR40a LTR ERVL 106 515 -4 2102 130 6 19 chrX 103148343 103148659 -59451271 - AluSx SINE Alu 0 312 1 529 248 50 126 chrX 103148659 103148849 -59451081 - MIR SINE MIR -86 176 7 1334 108 0 36 chrX 103148974 103149196 -59450734 + L1PA6 LINE L1 5941 6154 0 234 191 0 0 chrX 103149557 103149599 -59450331 + L2 LINE L2 3225 3266 -6 310 196 43 0 chrX 103149800 103149892 -59450038 - L1MB3 LINE L1 -1 6182 6087 458 303 77 35 chrX 103150728 103150933 -59448997 + MIR SINE MIR 22 236 -26 2158 93 0 4 chrX 103151746 103152054 -59447876 - AluSg SINE Alu 0 307 1 268 149 53 0 chrX 103152391 103152485 -59447445 + (TA)n Simple_repeat Simple_repeat 1 99 0 232 356 0 11 chrX 103152544 103152634 -59447296 - MIR SINE MIR -18 244 156 459 182 0 0 chrX 103152719 103152796 -59447134 - MIR SINE MIR -110 152 76 303 299 72 0 chrX 103153498 103153595 -59446335 - L2 LINE L2 0 3272 3169 398 285 168 0 chrX 103153637 103153774 -59446156 - L2 LINE L2 -359 2955 2796 2217 63 18 3 chrX 103154964 103155249 -59444681 + AluY SINE Alu 1 289 -22 660 240 170 76 chrX 103156440 103156484 -59443446 - LTR33 LTR ERVL -19 502 464 2241 120 3 0 chrX 103156484 103156784 -59443146 + AluSx SINE Alu 1 301 -11 660 240 170 76 chrX 103156784 103157198 -59442732 - LTR33 LTR ERVL -57 464 1 680 270 65 30 chrX 103157688 103157918 -59442012 - MIR SINE MIR -13 249 12 22 35 0 0 chrX 103158308 103158337 -59441593 + AT_rich Low_complexity Low_complexity 1 29 0 561 282 154 9 chrX 103158358 103158585 -59441345 - MIR SINE MIR 0 262 3 22 0 0 0 chrX 103158780 103158802 -59441128 + AT_rich Low_complexity Low_complexity 1 22 0 7196 40 25 0 chrX 103158802 103159789 -59440141 - L1PA5 LINE L1 0 6154 5161 2440 135 25 0 chrX 103159901 103160294 -59439636 - MER57A LTR ERV1 0 403 1 1761 88 4 15 chrX 103160294 103160556 -59439374 - MER57A-int LTR ERV1 0 7537 7279 655 96 22 67 chrX 103160556 103160691 -59439239 - LTR54B LTR ERV1 -367 131 3 9906 163 109 104 chrX 103160691 103162799 -59437131 - MER57A-int LTR ERV1 -391 7146 5051 509 102 10 91 chrX 103162799 103163030 -59436900 + AluSx SINE Alu 1 306 0 9906 163 109 104 chrX 103163030 103164612 -59435318 - MER57A-int LTR ERV1 -2486 5051 1819 290 26 26 0 chrX 103164648 103164687 -59435243 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2202 98 25 0 chrX 103164780 103165065 -59434865 + AluSx SINE Alu 1 292 -20 1893 129 66 33 chrX 103165074 103165437 -59434493 + THE1C LTR MaLR 1 375 0 498 108 0 0 chrX 103165489 103165563 -59434367 + (TA)n Simple_repeat Simple_repeat 2 75 0 268 184 0 105 chrX 103165654 103165730 -59434200 - HUERS-P1 LTR ERV1 -3365 2898 2831 5557 121 6 7 chrX 103165835 103166678 -59433252 - HUERS-P1 LTR ERV1 -6695 842 1 2337 147 18 0 chrX 103166678 103167073 -59432857 - MER57A LTR ERV1 0 403 2 500 229 9 9 chrX 103167938 103168047 -59431883 - L2 LINE L2 -2 3311 3203 3147 149 2 2 chrX 103168278 103168773 -59431157 - LOR1a LTR ERV1 0 497 3 298 272 168 24 chrX 103169148 103169273 -59430657 - MIR SINE MIR -110 152 10 318 130 0 0 chrX 103169419 103169465 -59430465 - MIR SINE MIR -72 136 91 435 106 0 0 chrX 103169539 103169605 -59430325 + (TG)n Simple_repeat Simple_repeat 2 67 0 456 287 72 72 chrX 103169849 103170142 -59429788 - L1MC4a LINE L1 -1849 5959 5667 353 273 95 46 chrX 103170151 103170416 -59429514 + L1P LINE L1 4078 4349 -1797 6680 108 12 1 chrX 103170534 103171600 -59428330 + L1MA2 LINE L1 5226 6303 -1 3814 191 17 34 chrX 103171600 103172520 -59427410 + L1MC2 LINE L1 5423 6335 -9 524 293 72 51 chrX 103172672 103173047 -59426883 + L1M4 LINE L1 4624 5006 -1140 247 351 114 9 chrX 103173608 103173722 -59426208 + MIR SINE MIR 17 142 -66 1796 204 65 11 chrX 103173899 103174345 -59425585 - L1ME1 LINE L1 -6 6160 5691 217 377 39 32 chrX 103174566 103174720 -59425210 + L2 LINE L2 2656 2810 -504 198 352 34 0 chrX 103174692 103174780 -59425150 - MIR SINE MIR -14 248 158 * 203 301 151 41 chrX 103174907 103175053 -59424877 + L2 LINE L2 2907 3068 -204 1916 179 14 7 chrX 103175086 103175517 -59424413 - L1MCa LINE L1 -5118 1308 875 * 19670 150 22 19 chrX 103175512 103178282 -59421648 - L1PA14 LINE L1 0 7599 4837 2094 129 3 3 chrX 103178282 103178585 -59421345 - AluSx SINE Alu -9 303 1 19670 150 22 19 chrX 103178585 103183389 -59416541 - L1PA14 LINE L1 -2762 4837 2 2102 186 39 19 chrX 103183387 103183429 -59416501 - L1MCa LINE L1 -5014 893 853 * 300 27 0 0 chrX 103183429 103183466 -59416464 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2102 186 39 19 chrX 103183466 103183958 -59415972 - L1MCa LINE L1 -5054 853 377 915 184 24 28 chrX 103184035 103184247 -59415683 - L1MCa LINE L1 -6195 231 21 527 321 79 33 chrX 103184400 103184640 -59415290 - MIR SINE MIR -2 260 10 2391 84 3 0 chrX 103184843 103185141 -59414789 - AluSp SINE Alu -14 299 1 2332 105 47 8 chrX 103185996 103186357 -59413573 + THE1C LTR MaLR 1 375 0 255 175 0 0 chrX 103187738 103187795 -59412135 + (CA)n Simple_repeat Simple_repeat 2 58 0 2348 98 0 3 chrX 103188002 103188297 -59411633 - AluSx SINE Alu -17 295 2 1097 171 66 83 chrX 103190254 103190442 -59409488 + L1MA9 LINE L1 5920 6101 -211 1955 128 3 24 chrX 103190442 103190740 -59409190 + AluSx SINE Alu 7 298 -14 1097 171 66 83 chrX 103190740 103190913 -59409017 + L1MA9 LINE L1 6101 6275 -37 33 43 0 0 chrX 103191339 103191386 -59408544 + AT_rich Low_complexity Low_complexity 1 47 0 339 268 71 121 chrX 103191983 103192181 -59407749 - MER5A DNA MER1_type 0 189 2 289 250 0 56 chrX 103192402 103192474 -59407456 - L2 LINE L2 0 3272 3205 3131 19 0 0 chrX 103193584 103193949 -59405981 - L1P LINE L1 -1581 4565 4201 2745 25 6 0 chrX 103193927 103194253 -59405677 + L1PA2 LINE L1 5828 6155 0 * 611 295 25 37 chrX 103195102 103195194 -59404736 - MIR SINE MIR -13 249 157 4242 85 50 28 chrX 103195194 103195831 -59404099 + MER39B LTR ERV1 1 651 -2 611 295 25 37 chrX 103195831 103195960 -59403970 - MIR SINE MIR -105 157 33 251 206 29 0 chrX 103196690 103196758 -59403172 + GA-rich Low_complexity Low_complexity 2 71 0 281 194 51 102 chrX 103196782 103196880 -59403050 + MER103 DNA DNA 29 121 -45 1997 155 0 0 chrX 103196888 103197179 -59402751 + AluSx SINE Alu 3 293 -19 254 313 122 0 chrX 103197404 103197535 -59402395 + L2 LINE L2 3154 3300 -13 298 368 17 0 chrX 103197713 103197830 -59402100 - MIR3 SINE MIR -88 120 2 2187 105 3 10 chrX 103198081 103198385 -59401545 + AluSp SINE Alu 1 302 -11 599 254 57 38 chrX 103198389 103198598 -59401332 - MER102b DNA MER1_type -12 329 117 419 285 61 24 chrX 103200618 103200783 -59399147 - MIR SINE MIR -87 175 5 463 340 56 19 chrX 103201142 103201357 -59398573 - MIR SINE MIR -28 234 12 2408 85 0 0 chrX 103201428 103201735 -59398195 - AluSc SINE Alu -2 307 1 6928 61 8 0 chrX 103201760 103203390 -59396540 + L1PA7 LINE L1 4516 6151 -3 2301 133 6 0 chrX 103203443 103203788 -59396142 + MER7A DNA MER2_type 1 345 -1 213 132 0 0 chrX 103203789 103203827 -59396103 + (TTA)n Simple_repeat Simple_repeat 1 38 0 269 146 42 0 chrX 103204558 103204606 -59395324 + L2 LINE L2 3223 3272 0 200 365 52 17 chrX 103205282 103205397 -59394533 - L2 LINE L2 -215 3057 2939 934 289 142 9 chrX 103205409 103205748 -59394182 - L2 LINE L2 -710 2604 2221 352 322 98 0 chrX 103206058 103206201 -59393729 - MIR SINE MIR -30 232 76 243 220 0 0 chrX 103206541 103206591 -59393339 + MIR SINE MIR 213 262 0 524 232 76 0 chrX 103206623 103206759 -59393171 - MIR SINE MIR -64 144 37 209 281 0 18 chrX 103207122 103207179 -59392751 - L2 LINE L2 -8 3264 3209 23 0 0 0 chrX 103207371 103207394 -59392536 + AT_rich Low_complexity Low_complexity 1 23 0 431 289 14 49 chrX 103207464 103207606 -59392324 - MIR3 SINE MIR -14 194 58 428 314 0 8 chrX 103208145 103208263 -59391667 + MIR SINE MIR 20 136 -126 201 178 0 0 chrX 103208367 103208412 -59391518 + (CTA)n Simple_repeat Simple_repeat 1 45 0 369 296 26 9 chrX 103208720 103208835 -59391095 + L2 LINE L2 3197 3313 0 926 300 79 47 chrX 103208893 103209760 -59390170 - L2 LINE L2 0 3313 2406 366 322 55 14 chrX 103209780 103209926 -59390004 - L2 LINE L2 -1 3312 3161 383 23 0 0 chrX 103210442 103210486 -59389444 - L1P LINE L1 -1182 4964 4921 22 70 0 0 chrX 103210501 103210544 -59389386 + AT_rich Low_complexity Low_complexity 1 43 0 225 183 171 24 chrX 103210555 103210637 -59389293 - L1MA10 LINE L1 -3 6331 6238 260 197 47 0 chrX 103210662 103210731 -59389199 - L1MB5 LINE L1 -155 6011 5936 3081 237 100 11 chrX 103211123 103212004 -59387926 - L2 LINE L2 -407 2907 1949 454 336 48 83 chrX 103212119 103212408 -59387522 - L2 LINE L2 -1 3271 2993 460 242 11 0 chrX 103213689 103213779 -59386151 + Charlie1 DNA MER1_type 2 92 -2669 1294 202 0 55 chrX 103213779 103214032 -59385898 - MER8 DNA MER2_type 0 239 1 * 2929 175 26 92 chrX 103214032 103214790 -59385140 + Charlie1 DNA MER1_type 2014 2718 -43 2287 86 3 20 chrX 103214790 103215094 -59384836 + AluSg SINE Alu 1 299 -11 2929 175 26 92 chrX 103215094 103215136 -59384794 + Charlie1 DNA MER1_type 2718 2761 0 227 196 43 0 chrX 103215304 103215350 -59384580 - L1P4 LINE L1 -335 5828 5781 656 277 73 20 chrX 103215352 103215652 -59384278 - L1MB5 LINE L1 -2165 5643 5328 191 341 0 0 chrX 103216626 103216670 -59383260 - L2 LINE L2 -20 3252 3209 312 286 83 0 chrX 103216720 103216804 -59383126 - MIR SINE MIR -15 247 157 252 306 41 47 chrX 103217062 103217232 -59382698 - L2 LINE L2 -460 2854 2686 525 273 35 58 chrX 103217473 103217733 -59382197 - MER112 DNA MER1_type -6 254 1 232 368 30 18 chrX 103217826 103217992 -59381938 + L2 LINE L2 2572 2739 -575 214 312 166 6 chrX 103218347 103218504 -59381426 + L2 LINE L2 3131 3312 -1 483 275 35 85 chrX 103218617 103218817 -59381113 + MIR3 SINE MIR 3 192 -16 2700 263 113 62 chrX 103218844 103219339 -59380591 - L2 LINE L2 -3 3310 2842 1776 118 30 92 chrX 103219339 103219739 -59380191 - THE1C LTR MaLR 0 375 1 2700 263 113 62 chrX 103219739 103219938 -59379992 - L2 LINE L2 -471 2842 2655 1348 122 31 75 chrX 103219938 103220232 -59379698 - L1MA7 LINE L1 0 6291 6011 2700 263 113 62 chrX 103220232 103221073 -59378857 - L2 LINE L2 -658 2655 1699 497 125 34 0 chrX 103221111 103221199 -59378731 - L1MA10 LINE L1 -2 6332 6242 3464 166 38 5 chrX 103221219 103221821 -59378109 - LTR26E LTR ERV1 0 622 1 2285 156 40 35 chrX 103222113 103222536 -59377394 - MSTA LTR MaLR 0 428 4 318 111 0 0 chrX 103222615 103222660 -59377270 - LTR29 LTR ERV1 -577 45 1 1666 149 32 0 chrX 103222897 103223212 -59376718 - HUERS-P1 LTR ERV1 -588 5743 5419 6369 118 50 4 chrX 103223223 103224343 -59375587 - L1MA2 LINE L1 0 6304 5134 4775 175 24 4 chrX 103224342 103225163 -59374767 - L1M1 LINE L1 -6590 975 138 * 816 254 77 32 chrX 103225164 103225518 -59374412 - HUERS-P1 LTR ERV1 -5756 1781 10 315 316 89 24 chrX 103225917 103226085 -59373845 - HUERS-P1 LTR ERV1 -6067 196 18 3322 178 44 7 chrX 103226111 103226706 -59373224 - LTR26E LTR ERV1 -5 617 1 247 176 20 0 chrX 103226706 103226757 -59373173 - L1MA10 LINE L1 -106 6228 6177 834 141 0 40 chrX 103226758 103226773 -59373157 + L1MB1 LINE L1 6013 6027 -162 2225 145 94 5 chrX 103226773 103227166 -59372764 - MSTA LTR MaLR 0 428 1 834 141 0 40 chrX 103227166 103227299 -59372631 + L1MB1 LINE L1 6027 6155 -34 183 80 0 0 chrX 103227299 103227324 -59372606 + (CA)n Simple_repeat Simple_repeat 1 25 0 283 339 16 8 chrX 103227388 103227512 -59372418 + CT-rich Low_complexity Low_complexity 2 126 0 32 26 0 0 chrX 103227707 103227746 -59372184 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chrX 103227884 103227908 -59372022 + AT_rich Low_complexity Low_complexity 1 24 0 1395 252 47 29 chrX 103228193 103228708 -59371222 - L1MC4 LINE L1 -142 7900 7377 521 213 0 0 chrX 103228712 103228806 -59371124 + AluJo SINE Alu 5 98 -214 1495 158 66 105 chrX 103228808 103229189 -59370741 - THE1C LTR MaLR -2 373 8 962 207 0 44 chrX 103229195 103229398 -59370532 + AluJo SINE Alu 93 286 -26 511 73 73 12 chrX 103229410 103229575 -59370355 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 212 71 86 14 chrX 103229584 103229654 -59370276 + (TA)n Simple_repeat Simple_repeat 2 76 0 2089 272 30 12 chrX 103229708 103230311 -59369619 - L1MC4a LINE L1 -851 6957 6344 * 2473 218 93 63 chrX 103230307 103230977 -59368953 - L1ME3 LINE L1 -2 6229 5580 230 0 0 32 chrX 103230977 103231008 -59368922 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2132 122 0 7 chrX 103231008 103231296 -59368634 - AluSq SINE Alu -27 286 1 2473 218 93 63 chrX 103231296 103231409 -59368521 - L1ME3 LINE L1 -651 5580 5472 2383 91 0 0 chrX 103231409 103231705 -59368225 + AluSx SINE Alu 1 296 -16 2473 218 93 63 chrX 103231705 103231819 -59368111 - L1ME3 LINE L1 -759 5472 5288 2426 259 58 18 chrX 103231863 103232825 -59367105 - L1ME3 LINE L1 -2409 3806 2806 1252 248 95 25 chrX 103232837 103233554 -59366376 - L1ME3 LINE L1 -3563 2652 1938 378 159 0 0 chrX 103233563 103233632 -59366298 + (CA)n Simple_repeat Simple_repeat 2 70 0 30 69 0 0 chrX 103233632 103233690 -59366240 + AT_rich Low_complexity Low_complexity 1 58 0 320 176 94 0 chrX 103234625 103234710 -59365220 - L1MA8 LINE L1 -66 6225 6133 618 161 8 0 chrX 103234711 103234829 -59365101 + L1MA8 LINE L1 6171 6289 -2 873 167 0 0 chrX 103237347 103237497 -59362433 - L1MB5 LINE L1 -6 6168 6019 1561 80 88 9 chrX 103237498 103237535 -59362395 - MLT2A1 LTR ERVL -2 442 409 213 39 0 0 chrX 103237535 103237561 -59362369 + (TA)n Simple_repeat Simple_repeat 2 27 0 1561 80 88 9 chrX 103237561 103237749 -59362181 - MLT2A1 LTR ERVL -35 409 199 382 188 0 0 chrX 103237774 103237838 -59362092 - L1MB5 LINE L1 -154 6020 5957 2275 113 0 0 chrX 103237951 103238253 -59361677 + AluSx SINE Alu 1 302 -10 223 349 73 9 chrX 103238915 103239024 -59360906 + MIR SINE MIR 20 135 -73 496 236 64 0 chrX 103239775 103239885 -59360045 - MIR SINE MIR -93 169 53 2544 52 0 3 chrX 103239921 103240231 -59359699 - AluY SINE Alu -1 310 2 219 325 68 75 chrX 103240375 103240627 -59359303 - L2 LINE L2 -189 3083 2834 297 75 0 0 chrX 103241945 103241985 -59357945 + (TG)n Simple_repeat Simple_repeat 2 41 0 445 244 11 0 chrX 103242494 103242670 -59357260 + (TG)n Simple_repeat Simple_repeat 2 179 0 218 209 0 0 chrX 103242686 103242729 -59357201 + (TATG)n Simple_repeat Simple_repeat 2 44 0 267 283 65 65 chrX 103242856 103242994 -59356936 + L2 LINE L2 2920 3057 -215 194 308 0 15 chrX 103243137 103243202 -59356728 + MER5A DNA MER1_type 126 189 0 467 276 0 37 chrX 103243204 103243338 -59356592 - MIR3 SINE MIR -50 158 30 1064 202 0 0 chrX 103243371 103243549 -59356381 - MER45A DNA AcHobo 0 178 1 198 260 0 20 chrX 103243566 103243616 -59356314 + L2 LINE L2 3261 3309 -4 2357 207 68 64 chrX 103244235 103244887 -59355043 - MLT1E1 LTR MaLR 0 654 1 1985 122 7 7 chrX 103245553 103245832 -59354098 + AluSx SINE Alu 1 279 -33 363 23 0 0 chrX 103245832 103245876 -59354054 + (CA)n Simple_repeat Simple_repeat 1 44 0 193 363 143 0 chrX 103246616 103246707 -59353223 - MIR SINE MIR -69 139 36 4140 180 56 40 chrX 103246983 103247501 -59352429 - L1MB8 LINE L1 -1 6177 5669 411 73 0 0 chrX 103247501 103247556 -59352374 + (TA)n Simple_repeat Simple_repeat 2 56 0 4140 180 56 40 chrX 103247556 103248023 -59351907 - L1MB8 LINE L1 -509 5669 5211 1764 167 3 17 chrX 103248023 103248316 -59351614 - AluJo SINE Alu -23 289 1 4140 180 56 40 chrX 103248316 103248883 -59351047 - L1MB8 LINE L1 -967 5211 4598 923 329 38 25 chrX 103248883 103249278 -59350652 - LTR16B LTR ERVL -64 400 1 1903 172 39 9 chrX 103250621 103250959 -59348971 + MER7A DNA MER2_type 1 346 0 450 249 118 59 chrX 103251229 103251398 -59348532 - MIR3 SINE MIR -14 194 16 1358 159 24 10 chrX 103251655 103251944 -59347986 + MER33 DNA MER1_type 30 322 -2 445 278 136 24 chrX 103251952 103252121 -59347809 + MER5A DNA MER1_type 2 189 0 452 361 71 40 chrX 103252392 103252910 -59347020 + L2 LINE L2 2221 2754 -560 * 584 250 27 7 chrX 103252906 103253054 -59346876 + MIR SINE MIR 108 258 -4 198 279 27 72 chrX 103254084 103254195 -59345735 + MER5A DNA MER1_type 84 189 0 7003 131 18 7 chrX 103254424 103256621 -59343309 + L1MA2 LINE L1 4085 6304 0 22 0 0 0 chrX 103256872 103256894 -59343036 + AT_rich Low_complexity Low_complexity 1 22 0 325 206 0 0 chrX 103258342 103258405 -59341525 - L2 LINE L2 0 3313 3251 283 311 144 59 chrX 103258415 103258972 -59340958 + L2 LINE L2 1989 2592 -722 2335 68 0 0 chrX 103259568 103259848 -59340082 + AluY SINE Alu 1 280 -31 234 0 0 0 chrX 103259848 103259874 -59340056 + (CA)n Simple_repeat Simple_repeat 1 26 0 2098 135 0 10 chrX 103260776 103261088 -59338842 + AluSx SINE Alu 1 309 -3 568 239 8 0 chrX 103261784 103261901 -59338029 + MER97a DNA MER1_type? 1 118 -776 1913 220 235 42 chrX 103261923 103262943 -59336987 + L2 LINE L2 2116 3313 0 195 42 0 0 chrX 103263283 103263307 -59336623 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2183 99 0 7 chrX 103263604 103263898 -59336032 + AluY SINE Alu 1 292 -19 3083 48 0 0 chrX 103263898 103264277 -59335653 + L1PA4 LINE L1 5777 6155 0 513 238 193 37 chrX 103265293 103265646 -59334284 - L1ME4a LINE L1 -98 6023 5616 2085 138 0 19 chrX 103265831 103266149 -59333781 - AluSx SINE Alu 0 312 1 845 240 43 35 chrX 103266222 103266480 -59333450 + MIR SINE MIR 3 262 0 679 270 49 35 chrX 103269218 103269444 -59330486 + MIR SINE MIR 26 254 -8 396 0 0 0 chrX 103269511 103269555 -59330375 + (CAT)n Simple_repeat Simple_repeat 1 44 0 880 155 0 147 chrX 103269628 103269879 -59330051 - MER20 DNA MER1_type -4 215 2 699 263 97 14 chrX 103270248 103270465 -59329465 + MIR SINE MIR 28 262 0 2738 149 15 2 chrX 103270540 103270995 -59328935 - LOR1b LTR ERV1 0 461 1 193 217 0 22 chrX 103272197 103272243 -59327687 - MIR3 SINE MIR 0 208 164 24 53 0 0 chrX 103272346 103272384 -59327546 + AT_rich Low_complexity Low_complexity 1 38 0 1996 119 3 7 chrX 103272393 103272678 -59327252 + AluSp SINE Alu 1 284 -29 6888 59 6 9 chrX 103272678 103273744 -59326186 + L1PA7 LINE L1 5093 6154 0 1439 165 96 34 chrX 103273890 103274181 -59325749 - AluJb SINE Alu -3 309 1 232 295 16 0 chrX 103274237 103274298 -59325632 - MIR SINE MIR -63 145 84 11933 26 1 1 chrX 103274428 103276070 -59323860 - L1PA4 LINE L1 -547 5608 3967 4623 31 2 0 chrX 103276070 103276616 -59323314 + L1PA4 LINE L1 5605 6155 0 459 353 162 26 chrX 103276834 103277624 -59322306 + L2 LINE L2 2380 3271 -1 363 44 0 0 chrX 103278092 103278137 -59321793 + (TG)n Simple_repeat Simple_repeat 1 45 0 193 212 15 61 chrX 103278811 103278877 -59321053 - L2 LINE L2 -796 2518 2456 231 250 0 17 chrX 103278881 103278941 -59320989 + L2 LINE L2 3255 3313 0 668 292 60 9 chrX 103279034 103279267 -59320663 + MIR SINE MIR 18 262 0 217 176 0 59 chrX 103279749 103279800 -59320130 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 372 200 0 0 chrX 103279815 103279875 -59320055 + AluJ/FLAM SINE Alu 1 60 -242 906 130 0 14 chrX 103279881 103280019 -59319911 + FRAM SINE Alu 1 40 0 1889 159 3 19 chrX 103280347 103280662 -59319268 + AluJb SINE Alu 3 312 0 714 294 55 49 chrX 103280802 103281169 -59318761 - LTR16A1 LTR ERVL -88 369 1 501 308 53 31 chrX 103281322 103281549 -59318381 - MIR SINE MIR -11 251 20 22 0 0 0 chrX 103281695 103281717 -59318213 + AT_rich Low_complexity Low_complexity 1 22 0 523 286 91 11 chrX 103281794 103281969 -59317961 - MIR SINE MIR -62 200 12 1303 234 63 46 chrX 103282286 103282700 -59317230 - L2 LINE L2 -2 3311 2891 227 105 53 0 chrX 103283586 103283624 -59316306 + MLT1D LTR MaLR 424 463 -42 2393 160 48 31 chrX 103284707 103285183 -59314747 - L1MA7 LINE L1 -25 6852 6369 332 119 17 0 chrX 103285195 103285254 -59314676 + (TA)n Simple_repeat Simple_repeat 1 60 0 12704 211 36 43 chrX 103285257 103287718 -59312212 - L1MA7 LINE L1 -498 6379 3903 1065 152 12 12 chrX 103287718 103287889 -59312041 - AluSg/x SINE Alu -8 302 132 2127 139 3 0 chrX 103287889 103288192 -59311738 - AluSq SINE Alu -9 304 1 12704 211 36 43 chrX 103288192 103289959 -59309971 - L1MA7 LINE L1 -2973 3904 2368 1546 191 71 76 chrX 103289959 103290393 -59309537 + MSTB1 LTR MaLR 1 432 0 12704 211 36 43 chrX 103290393 103291818 -59308112 - L1MA7 LINE L1 -4509 2368 935 5752 112 23 2 chrX 103292158 103293413 -59306517 - L1PA15 LINE L1 0 6165 4919 304 316 65 83 chrX 103293967 103294104 -59305826 - L3 LINE CR1 -68 1509 1374 2215 113 0 0 chrX 103294104 103294396 -59305534 + AluSx SINE Alu 6 297 -15 304 316 65 83 chrX 103294396 103294426 -59305504 - L3 LINE CR1 -203 1374 1345 6011 176 17 18 chrX 103294428 103295784 -59304146 - L1PA13 LINE L1 -11 6152 4796 2067 134 13 0 chrX 103295784 103296090 -59303840 + AluSq SINE Alu 3 312 -1 6011 176 17 18 chrX 103296090 103296612 -59303318 - L1PA13 LINE L1 -1367 4796 4311 2428 66 7 0 chrX 103296612 103296915 -59303015 + AluY SINE Alu 1 305 -6 6011 176 17 18 chrX 103296915 103297093 -59302837 - L1PA13 LINE L1 -1852 4311 4134 2197 94 3 3 chrX 103297175 103297472 -59302458 + AluSg SINE Alu 1 297 -13 200 397 61 23 chrX 103297783 103297914 -59302016 + L2 LINE L2 3127 3262 -10 347 288 37 68 chrX 103298997 103299292 -59300638 - L1MC4a LINE L1 -1785 6023 5738 432 82 0 0 chrX 103299293 103299354 -59300576 + (TG)n Simple_repeat Simple_repeat 1 61 0 242 368 49 11 chrX 103299504 103299689 -59300241 - L2 LINE L2 -5 3308 3117 336 257 200 21 chrX 103300866 103301006 -59298924 + MIR3 SINE MIR 19 183 -25 697 291 68 0 chrX 103301547 103301767 -59298163 + MIR SINE MIR 23 257 -5 386 286 25 8 chrX 103302432 103302551 -59297379 - MIR3 SINE MIR -73 135 15 422 272 29 10 chrX 103302938 103303041 -59296889 - L2 LINE L2 -17 3296 3192 551 303 77 5 chrX 103303044 103303239 -59296691 - MIR SINE MIR -46 216 8 219 245 0 0 chrX 103303499 103303548 -59296382 - MIR SINE MIR -1 261 213 1141 122 37 0 chrX 103303571 103303759 -59296171 - L1MA4 LINE L1 -16 6284 6090 * 7616 24 1 0 chrX 103303755 103305078 -59294852 + L1PA4 LINE L1 4832 6155 0 7137 161 11 12 chrX 103305106 103307231 -59292699 - L1MA4 LINE L1 -198 6102 3977 674 271 5 37 chrX 103307231 103307419 -59292511 - MIR SINE MIR -69 193 12 25 31 0 0 chrX 103308205 103308237 -59291693 + AT_rich Low_complexity Low_complexity 1 32 0 393 361 17 0 chrX 103308763 103308882 -59291048 + MIR3 SINE MIR 34 154 -54 2478 70 0 0 chrX 103309178 103309478 -59290452 - AluSg SINE Alu -10 300 1 2468 74 3 0 chrX 103309812 103310124 -59289806 + AluSp SINE Alu 1 313 0 261 0 0 0 chrX 103310302 103310331 -59289599 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chrX 103310872 103310895 -59289035 + AT_rich Low_complexity Low_complexity 1 23 0 398 331 0 15 chrX 103311685 103311815 -59288115 + MER94 DNA DNA 1 128 -6 295 244 30 84 chrX 103312047 103312178 -59287752 + L2 LINE L2 2635 2758 -556 320 284 0 0 chrX 103312348 103312415 -59287515 + L2 LINE L2 3206 3272 0 7194 13 0 0 chrX 103313283 103314101 -59285829 + L1PA3 LINE L1 5335 6152 -3 26 0 0 0 chrX 103314101 103314127 -59285803 + AT_rich Low_complexity Low_complexity 1 26 0 3098 169 43 75 chrX 103314935 103315651 -59284279 - LTR8A LTR ERV1 -1 726 34 395 304 24 8 chrX 103315753 103315878 -59284052 - MIR SINE MIR -42 220 94 266 405 78 20 chrX 103316406 103316919 -59283011 + L2 LINE L2 2565 3108 -164 22 0 0 0 chrX 103317040 103317062 -59282868 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chrX 103317309 103317334 -59282596 + AT_rich Low_complexity Low_complexity 1 25 0 230 307 54 60 chrX 103317587 103317753 -59282177 + L2 LINE L2 2334 2498 -816 719 217 26 7 chrX 103317774 103317926 -59282004 + MER5A DNA MER1_type 35 189 0 320 420 0 0 chrX 103317935 103318073 -59281857 - L2 LINE L2 -556 2758 2621 292 318 8 23 chrX 103318279 103318411 -59281519 - L2 LINE L2 -974 2340 2211 223 269 93 9 chrX 103318452 103318560 -59281370 + L2 LINE L2 2150 2266 -1048 191 306 189 29 chrX 103318559 103318765 -59281165 - L2 LINE L2 -1132 2182 1944 * 3362 126 10 0 chrX 103318795 103319293 -59280637 + MER1A DNA MER1_type 6 522 -7 240 357 112 23 chrX 103319304 103319651 -59280279 - L2 LINE L2 -1406 1908 1531 24 0 0 0 chrX 103320091 103320115 -59279815 + AT_rich Low_complexity Low_complexity 1 24 0 203 320 30 30 chrX 103320773 103320873 -59279057 + L2 LINE L2 3163 3262 -10 413 325 113 13 chrX 103321421 103321572 -59278358 + L2 LINE L2 3107 3272 0 195 132 0 79 chrX 103321654 103321692 -59278238 - MIR SINE MIR -12 250 216 * 542 332 55 61 chrX 103321659 103322095 -59277835 - L2 LINE L2 -19 3253 2750 188 338 0 42 chrX 103322692 103322763 -59277167 - L2 LINE L2 -1 3271 3204 783 238 52 108 chrX 103322794 103323181 -59276749 - MLT1A1 LTR MaLR 0 365 1 21 57 0 0 chrX 103324067 103324102 -59275828 + AT_rich Low_complexity Low_complexity 1 35 0 193 250 0 0 chrX 103327704 103327744 -59272186 - L2 LINE L2 -7 3306 3267 378 333 16 8 chrX 103330840 103330966 -59268964 + MIR3 SINE MIR 44 170 -38 946 324 128 7 chrX 103331296 103331741 -59268189 - L2 LINE L2 -4 3309 2811 516 72 0 0 chrX 103331753 103331822 -59268108 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 937 303 207 21 chrX 103331866 103332490 -59267440 - L2 LINE L2 -768 2546 1807 4225 239 27 15 chrX 103332530 103334162 -59265768 + L1M1 LINE L1 2807 4466 -3099 2577 174 68 30 chrX 103334148 103334252 -59265678 + L1MA6 LINE L1 5675 5774 -526 * 306 0 0 0 chrX 103334252 103334286 -59265644 + (TA)n Simple_repeat Simple_repeat 1 34 0 2577 174 68 30 chrX 103334286 103334784 -59265146 + L1MA6 LINE L1 5774 6300 0 609 266 90 21 chrX 103334772 103335107 -59264823 + HAL1b LINE L1 991 1348 0 * 2006 212 42 24 chrX 103335167 103335663 -59264267 + MLT1D LTR MaLR 1 505 0 312 314 151 48 chrX 103335667 103335728 -59264202 + L2 LINE L2 2644 2697 -616 1537 184 16 6 chrX 103335728 103336049 -59263881 + MER33 DNA MER1_type 1 324 0 312 314 151 48 chrX 103336049 103336076 -59263854 + L2 LINE L2 2697 2720 -593 2171 105 0 0 chrX 103336076 103336371 -59263559 - AluSg SINE Alu -15 295 1 312 314 151 48 chrX 103336371 103336796 -59263134 + L2 LINE L2 2720 3205 -108 691 285 31 10 chrX 103338332 103338525 -59261405 + MIR SINE MIR 32 228 -34 2165 117 3 0 chrX 103339137 103339428 -59260502 + AluSx SINE Alu 1 292 -20 199 338 130 0 chrX 103339492 103339646 -59260284 + L2 LINE L2 3140 3313 0 355 331 140 30 chrX 103339801 103340166 -59259764 + L2 LINE L2 2904 3308 -5 262 330 40 20 chrX 103342087 103342187 -59257743 - MER5A DNA MER1_type 0 189 88 297 282 301 0 chrX 103342245 103342401 -59257529 - L3 LINE CR1 -44 1533 1331 1694 129 158 80 chrX 103342906 103343279 -59256651 - MER4A LTR ERV1 0 664 263 604 141 0 10 chrX 103343279 103343378 -59256552 - MER4A LTR ERV1 -566 98 1 11929 108 47 25 chrX 103343384 103345382 -59254548 - MER4A-int LTR ERV1 -2 6596 4557 2647 139 77 70 chrX 103345382 103346027 -59253903 - MER4A-int LTR ERV1 -5765 833 1 1968 122 3 22 chrX 103346030 103346382 -59253548 - MER4A LTR ERV1 0 664 261 682 111 0 10 chrX 103346382 103346481 -59253449 - MER4A LTR ERV1 -566 98 1 978 118 0 13 chrX 103346576 103346728 -59253202 + AluSp/q SINE Alu 164 313 0 477 238 18 73 chrX 103347966 103348130 -59251800 + L2 LINE L2 3159 3313 0 410 310 90 58 chrX 103348216 103348684 -59251246 + L2 LINE L2 2831 3313 0 213 308 28 47 chrX 103349463 103349570 -59250360 + L2 LINE L2 3204 3308 -5 405 330 33 22 chrX 103351371 103351553 -59248377 - MER5A DNA MER1_type 0 189 6 1086 220 10 5 chrX 103351568 103351777 -59248153 - MER58A DNA MER1_type 0 224 15 554 339 21 0 chrX 103352162 103352354 -59247576 - MER117 DNA MER1_type 0 197 2 207 0 0 0 chrX 103354075 103354098 -59245832 + (T)n Simple_repeat Simple_repeat 1 23 0 195 276 53 0 chrX 103355321 103355397 -59244533 + MIR3 SINE MIR 121 200 -8 181 282 42 42 chrX 103355523 103355594 -59244336 - L2 LINE L2 -17 3255 3185 * 247 274 140 40 chrX 103355582 103355720 -59244210 - MIR SINE MIR -62 146 24 2177 213 59 16 chrX 103355781 103356479 -59243451 + L1ME1 LINE L1 5095 5819 -347 4892 111 8 0 chrX 103356484 103357223 -59242707 - L1P LINE L1 -815 5331 4587 * 5784 95 4 0 chrX 103357218 103358009 -59241921 + L1PA10 LINE L1 5373 6166 -2 1215 248 16 16 chrX 103358013 103358331 -59241599 + L1ME1 LINE L1 5812 6129 -37 222 91 0 0 chrX 103358962 103358995 -59240935 + (TA)n Simple_repeat Simple_repeat 1 33 0 1534 160 72 36 chrX 103360795 103361157 -59238773 + THE1C LTR MaLR 1 375 0 198 0 0 0 chrX 103361463 103361485 -59238445 + (A)n Simple_repeat Simple_repeat 1 22 0 2333 123 22 3 chrX 103362675 103363032 -59236898 + THE1B LTR MaLR 1 364 0 219 36 0 0 chrX 103363991 103364019 -59235911 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2183 65 0 48 chrX 103364019 103364309 -59235621 - AluY SINE Alu -35 276 1 2098 123 0 0 chrX 103364739 103365024 -59234906 + AluSx SINE Alu 1 285 -27 6640 132 18 2 chrX 103365154 103366501 -59233429 - L1MA2 LINE L1 0 7723 6355 22 35 0 0 chrX 103366520 103366549 -59233381 + AT_rich Low_complexity Low_complexity 1 29 0 1111 82 0 19 chrX 103366591 103366749 -59233181 - L1PA8 LINE L1 -10 6162 6008 9724 164 36 41 chrX 103366749 103369021 -59230909 - L1MA2 LINE L1 -2404 5161 2879 869 103 23 0 chrX 103369021 103369196 -59230734 + (TA)n Simple_repeat Simple_repeat 1 179 0 9724 164 36 41 chrX 103369196 103369634 -59230296 - L1MA2 LINE L1 -4686 2879 2440 2070 122 3 0 chrX 103369634 103369930 -59230000 - AluSq SINE Alu -16 297 1 9724 164 36 41 chrX 103369930 103370563 -59229367 - L1MA2 LINE L1 -5125 2440 1834 2552 44 0 0 chrX 103370568 103370863 -59229067 + AluY SINE Alu 1 295 -16 1277 100 12 0 chrX 103370863 103371033 -59228897 + AluSc SINE Alu 132 303 -6 1581 219 92 48 chrX 103371033 103371732 -59228198 - L1MA2 LINE L1 -5728 1837 14 276 290 0 14 chrX 103372045 103372114 -59227816 - MIR SINE MIR -73 189 122 315 0 0 0 chrX 103372174 103372209 -59227721 + (TG)n Simple_repeat Simple_repeat 1 35 0 320 283 71 9 chrX 103372638 103372751 -59227179 + MIR SINE MIR 120 239 -23 2151 289 72 27 chrX 103375177 103375923 -59224007 + L1M2b LINE L1 1 780 -6429 713 206 185 35 chrX 103376061 103376499 -59223431 + L1M2b LINE L1 1635 2250 -4959 7742 168 4 0 chrX 103376504 103377878 -59222052 - L1P LINE L1 -909 5237 3859 489 284 36 10 chrX 103377868 103378236 -59221694 - L1M4 LINE L1 -3043 3601 3137 * 423 0 0 0 chrX 103378300 103378347 -59221583 + (CA)n Simple_repeat Simple_repeat 2 48 0 1954 180 8 2 chrX 103378496 103378890 -59221040 - L1MB4 LINE L1 -1 6179 5784 210 138 52 0 chrX 103378892 103378950 -59220980 + (TA)n Simple_repeat Simple_repeat 2 62 0 2858 168 34 21 chrX 103378950 103379651 -59220279 - L1M4 LINE L1 -388 5792 5067 286 133 133 82 chrX 103379628 103379726 -59220204 + L1M4 LINE L1 5773 5875 -303 * 493 148 11 11 chrX 103379728 103379816 -59220114 - L1MB8 LINE L1 -77 6101 6014 2146 250 74 28 chrX 103379819 103380464 -59219466 - L1M4 LINE L1 -5869 673 16 237 163 0 0 chrX 103380505 103380554 -59219376 + (TG)n Simple_repeat Simple_repeat 2 50 0 412 281 16 16 chrX 103381609 103381737 -59218193 + CT-rich Low_complexity Low_complexity 4 131 0 328 233 27 0 chrX 103382356 103382429 -59217501 + MIR SINE MIR 179 253 -9 236 206 15 29 chrX 103383105 103383173 -59216757 + (TG)n Simple_repeat Simple_repeat 1 67 0 272 305 92 23 chrX 103384662 103384793 -59215137 + MIR3 SINE MIR 21 160 -48 243 79 0 0 chrX 103384798 103384836 -59215094 + (TC)n Simple_repeat Simple_repeat 1 38 0 321 89 0 0 chrX 103384837 103384882 -59215048 + (CA)n Simple_repeat Simple_repeat 1 45 0 263 215 127 38 chrX 103385254 103385333 -59214597 + L2 LINE L2 3203 3288 -25 767 205 99 0 chrX 103385471 103385632 -59214298 - MIR SINE MIR -13 249 73 1623 106 31 0 chrX 103385634 103385888 -59214042 - MER6 DNA MER2_type 0 865 604 2042 181 29 11 chrX 103386006 103386355 -59213575 - MER6 DNA MER2_type -510 355 1 1798 163 88 25 chrX 103388004 103388404 -59211526 - MSTC LTR MaLR -3 425 1 639 310 25 21 chrX 103388750 103388992 -59210938 - MLT1J LTR MaLR -11 500 258 415 329 0 46 chrX 103389113 103389265 -59210665 + MER5A DNA MER1_type 20 164 -25 1040 251 38 20 chrX 103389387 103389688 -59210242 - MLT1J1 LTR MaLR -141 309 6 899 211 12 0 chrX 103389706 103389867 -59210063 + MER45A DNA AcHobo 1 163 -15 2267 282 121 34 chrX 103389968 103390878 -59209052 + L3 LINE CR1 544 1532 -45 912 250 86 18 chrX 103390963 103391183 -59208747 + MIR SINE MIR 28 262 0 398 310 15 70 chrX 103391485 103391685 -59208245 - MIR SINE MIR -52 210 22 763 268 38 13 chrX 103392372 103392607 -59207323 - MIR SINE MIR -8 254 14 631 254 20 58 chrX 103394170 103394365 -59205565 + MIR SINE MIR 7 192 -70 410 306 8 30 chrX 103394371 103394505 -59205425 + MIR SINE MIR 21 151 -111 1445 221 62 60 chrX 103395217 103395720 -59204210 + MLT1D LTR MaLR 2 505 0 213 143 24 0 chrX 103396044 103396086 -59203844 + CT-rich Low_complexity Low_complexity 2 44 0 816 260 56 24 chrX 103396173 103396423 -59203507 + MIR SINE MIR 1 258 -4 427 319 43 21 chrX 103396421 103396602 -59203328 + MIR3 SINE MIR 6 191 -17 * 24 32 0 0 chrX 103399200 103399231 -59200699 + AT_rich Low_complexity Low_complexity 1 31 0 869 234 28 5 chrX 103399441 103399655 -59200275 + MER20 DNA MER1_type 1 219 0 236 192 26 51 chrX 103399762 103399840 -59200090 + A-rich Low_complexity Low_complexity 1 76 0 376 218 73 18 chrX 103399933 103400043 -59199887 + LTR67 LTR ERVL 432 547 -10 189 400 17 0 chrX 103400302 103400417 -59199513 - L2 LINE L2 -189 3083 2967 186 301 0 72 chrX 103400432 103400515 -59199415 + MIR SINE MIR 30 106 -102 2211 88 3 0 chrX 103400725 103401074 -59198856 + AluSp SINE Alu 1 350 0 222 276 0 17 chrX 103402590 103402648 -59197282 + MIR SINE MIR 160 216 -46 733 272 81 44 chrX 103403045 103403504 -59196426 - L1MC4a LINE L1 -1626 6182 5707 22 80 0 0 chrX 103405261 103405311 -59194619 + AT_rich Low_complexity Low_complexity 1 50 0 6057 101 6 3 chrX 103406579 103407455 -59192475 - L1MA3 LINE L1 0 6305 5428 315 0 0 0 chrX 103408002 103408037 -59191893 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 2356 90 0 0 chrX 103408080 103408380 -59191550 + AluY SINE Alu 3 302 -9 790 270 151 36 chrX 103409365 103409861 -59190069 + MLT1H1 LTR MaLR 3 555 0 2092 137 0 0 chrX 103410914 103411395 -59188535 - AluSx SINE Alu 0 481 1 411 326 78 0 chrX 103411965 103412094 -59187836 - L2 LINE L2 -2 3270 3132 201 133 0 44 chrX 103412454 103412499 -59187431 + (TTTTTA)n Simple_repeat Simple_repeat 3 45 0 772 20 16 3 chrX 103412502 103412610 -59187320 + L1PA5 LINE L1 5770 5880 -283 590 327 52 24 chrX 103413362 103413610 -59186320 - MIR SINE MIR -6 256 2 259 291 17 6 chrX 103413680 103413855 -59186075 + (TAA)n Simple_repeat Simple_repeat 2 178 0 180 234 0 0 chrX 103413857 103413904 -59186026 + (TAG)n Simple_repeat Simple_repeat 3 49 0 325 319 0 0 chrX 103413912 103414003 -59185927 - MIR SINE MIR -12 250 160 3906 189 44 20 chrX 103414022 103414869 -59185061 - L1MB8 LINE L1 -2 6176 5310 25 51 0 0 chrX 103415639 103415678 -59184252 + AT_rich Low_complexity Low_complexity 1 39 0 1022 173 0 28 chrX 103415944 103416123 -59183807 - AluJo SINE Alu -34 278 105 3442 117 22 38 chrX 103417049 103417632 -59182298 + MER4B LTR ERV1 1 574 -36 307 260 10 0 chrX 103418290 103418386 -59181544 - L1MA5A LINE L1 -3 6294 6198 650 152 0 0 chrX 103418386 103418491 -59181439 + L1M2 LINE L1 5412 5516 -781 * 6445 187 39 54 chrX 103418479 103420078 -59179852 + L1MB1 LINE L1 3334 4907 -1239 2141 141 3 26 chrX 103420079 103420420 -59179510 + MER1B DNA MER1_type 1 333 -6 2605 174 15 25 chrX 103420421 103421616 -59178314 + L1MB1 LINE L1 4907 6168 0 235 352 92 40 chrX 103421822 103422049 -59177881 + L2 LINE L2 2613 2851 -463 194 349 222 8 chrX 103422272 103422398 -59177532 + L2 LINE L2 3117 3269 -3 1588 209 0 0 chrX 103422609 103422921 -59177009 + AluJb SINE Alu 1 312 0 553 306 149 0 chrX 103422942 103423257 -59176673 - MLT1J2 LTR MaLR -9 441 66 861 261 112 119 chrX 103423373 103423937 -59175993 - L3 LINE CR1 -132 1445 886 1930 202 68 14 chrX 103424887 103425327 -59174603 - MLT1C LTR MaLR -3 464 1 456 346 89 48 chrX 103426480 103427017 -59172913 - L2 LINE L2 -1 3312 2705 411 191 0 12 chrX 103427032 103427116 -59172814 - L1MD3 LINE L1 -10 7985 7903 252 330 68 0 chrX 103427128 103427216 -59172714 - L2 LINE L2 -674 2640 2547 341 354 0 0 chrX 103427257 103427353 -59172577 - L2 LINE L2 -31 3282 3187 547 272 132 21 chrX 103427458 103427922 -59172008 - MLT1H LTR MaLR 0 563 39 341 296 17 17 chrX 103428025 103428140 -59171790 - MIR3 SINE MIR -11 197 83 22 0 0 0 chrX 103429003 103429025 -59170905 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chrX 103429450 103429475 -59170455 + AT_rich Low_complexity Low_complexity 1 25 0 199 264 55 66 chrX 103430185 103430276 -59169654 + MIR SINE MIR 58 147 -115 * 880 283 70 24 chrX 103430274 103430603 -59169327 - L2 LINE L2 0 3313 2970 21 36 0 0 chrX 103430774 103430802 -59169128 + AT_rich Low_complexity Low_complexity 1 28 0 1487 172 28 31 chrX 103431157 103431448 -59168482 + AluJo SINE Alu 1 290 -22 231 276 66 0 chrX 103431468 103431544 -59168386 - MER103 DNA DNA -83 83 3 228 184 0 0 chrX 103431559 103431608 -59168322 + (TG)n Simple_repeat Simple_repeat 2 50 0 1425 207 137 29 chrX 103431763 103432217 -59167713 + MLT1D LTR MaLR 1 503 -2 6948 62 0 0 chrX 103434046 103435253 -59164677 - L1PA7 LINE L1 -9 6145 4939 187 384 0 0 chrX 103435640 103435713 -59164217 + MIR SINE MIR 88 160 -102 288 278 136 12 chrX 103437985 103438147 -59161783 - L2 LINE L2 0 3313 3132 189 0 0 0 chrX 103438929 103438950 -59160980 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 225 228 38 0 chrX 103439272 103439351 -59160579 + (TGAA)n Simple_repeat Simple_repeat 3 84 0 551 285 13 20 chrX 103440252 103440403 -59159527 - MIR3 SINE MIR -37 171 22 207 283 0 0 chrX 103440447 103440493 -59159437 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1296 220 122 25 chrX 103440565 103440983 -59158947 - MER110A LTR ERV1 -1 467 41 388 252 27 9 chrX 103441037 103441148 -59158782 - MER103 DNA DNA -52 114 2 251 114 0 0 chrX 103442135 103442170 -59157760 - U2 snRNA snRNA -153 35 1 2328 69 6 31 chrX 103442193 103442512 -59157418 - AluY SINE Alu 0 311 1 1273 129 35 8 chrX 103442792 103443091 -59156839 + THE1C LTR MaLR 1 374 -1 25 31 0 0 chrX 103443185 103443217 -59156713 + AT_rich Low_complexity Low_complexity 1 32 0 680 243 6 17 chrX 103443856 103444033 -59155897 - MER5B DNA MER1_type 0 178 4 791 303 44 0 chrX 103444503 103444731 -59155199 + MIR SINE MIR 7 244 -18 740 269 66 28 chrX 103446030 103446242 -59153688 + MIR SINE MIR 42 261 -1 461 288 118 19 chrX 103446667 103446879 -59153051 - L1MC4 LINE L1 -26 8016 7784 200 307 53 26 chrX 103448217 103448331 -59151599 - MIR SINE MIR -73 189 73 329 0 24 0 chrX 103448699 103448740 -59151190 + (TG)n Simple_repeat Simple_repeat 2 43 0 269 250 0 112 chrX 103449493 103449609 -59150321 - MIR SINE MIR -56 206 104 239 373 0 0 chrX 103449601 103449676 -59150254 - MIR3 SINE MIR -127 81 7 * 23 33 0 0 chrX 103449738 103449768 -59150162 + AT_rich Low_complexity Low_complexity 1 30 0 2318 242 75 57 chrX 103449778 103450244 -59149686 - L1MC4 LINE L1 -1 8041 7585 329 71 18 18 chrX 103450244 103450300 -59149630 - L1MA9 LINE L1 0 6312 6257 2318 242 75 57 chrX 103450300 103450771 -59149159 - L1MC4 LINE L1 -457 7585 7087 272 163 0 0 chrX 103450823 103450866 -59149064 - L1ME3 LINE L1 -30 6132 6090 * 3849 157 55 37 chrX 103450862 103451675 -59148255 - L1MB3 LINE L1 -37 6146 5319 31 26 0 0 chrX 103451675 103451713 -59148217 + AT_rich Low_complexity Low_complexity 1 38 0 6686 134 29 3 chrX 103451713 103453273 -59146657 - L1MA2 LINE L1 0 6304 4705 1517 282 158 16 chrX 103453257 103454093 -59145837 - L1MC4a LINE L1 -941 6936 5982 * 205 167 0 0 chrX 103454107 103454143 -59145787 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 2405 88 0 0 chrX 103454180 103454488 -59145442 + AluSg SINE Alu 3 310 0 2608 231 36 6 chrX 103454543 103455175 -59144755 - L1MD2 LINE L1 -10 6349 5699 441 288 141 0 chrX 103455187 103455371 -59144559 - L1MC4a LINE L1 -1982 5895 5686 748 222 0 0 chrX 103455404 103455557 -59144373 - MER63B DNA MER1_type 0 436 284 1617 93 12 4 chrX 103455567 103455813 -59144117 + L1MA2 LINE L1 6057 6304 0 2215 210 56 40 chrX 103455818 103456446 -59143484 + L1ME1 LINE L1 4672 5309 -837 2753 246 49 9 chrX 103456467 103457202 -59142728 + L1ME1 LINE L1 5385 6148 -18 27 81 0 0 chrX 103457205 103457267 -59142663 + AT_rich Low_complexity Low_complexity 1 62 0 1150 161 22 112 chrX 103457589 103457912 -59142018 - MER63B DNA MER1_type -139 297 4 1195 224 33 39 chrX 103457916 103458251 -59141679 - L1MC4a LINE L1 -2222 5655 5323 311 361 89 11 chrX 103458640 103458820 -59141110 + L2 LINE L2 1200 1393 -1921 641 293 19 0 chrX 103458837 103458994 -59140936 + MIR SINE MIR 15 174 -88 371 289 16 86 chrX 103459080 103459298 -59140632 + L2 LINE L2 1427 1620 -1694 2619 46 0 0 chrX 103459298 103459604 -59140326 - AluY SINE Alu -5 306 1 371 289 16 86 chrX 103459604 103459689 -59140241 + L2 LINE L2 1620 1709 -1605 201 331 53 86 chrX 103459698 103459943 -59139987 + L2 LINE L2 1678 1914 -1400 5686 160 21 12 chrX 103459943 103461807 -59138123 + L1PA16 LINE L1 4125 6005 -161 590 259 75 14 chrX 103461807 103462019 -59137911 + L2 LINE L2 2169 2393 -921 636 64 64 23 chrX 103462039 103462210 -59137720 + (TA)n Simple_repeat Simple_repeat 2 179 0 840 317 42 8 chrX 103462253 103462515 -59137415 + L2 LINE L2 2533 2803 -511 260 355 45 36 chrX 103462868 103463339 -59136591 + L2 LINE L2 2502 2976 -338 191 268 0 0 chrX 103463505 103463546 -59136384 - L2 LINE L2 -46 3226 3186 213 171 0 0 chrX 103463898 103463939 -59135991 - MIR SINE MIR -71 191 151 804 0 0 0 chrX 103463940 103464108 -59135822 - AluYa5/8 SINE Alu 0 360 193 473 290 37 37 chrX 103464109 103464271 -59135659 - MIR SINE MIR -98 164 3 2602 218 49 48 chrX 103464980 103465789 -59134141 - L1MC4a LINE L1 -1273 4942 4133 1627 283 54 33 chrX 103465808 103466618 -59133312 - L1MC4a LINE L1 -3985 2411 1585 1143 153 74 12 chrX 103466619 103466861 -59133069 - LTR38B LTR ERV1 0 610 354 502 219 68 26 chrX 103466862 103467054 -59132876 - L1MC4a LINE L1 -4810 1586 1387 200 299 45 0 chrX 103468606 103468673 -59131257 - MIR3 SINE MIR 0 208 139 972 259 117 47 chrX 103468706 103469193 -59130737 - MLT1H LTR MaLR -8 541 21 296 356 0 0 chrX 103469218 103469291 -59130639 - L3 LINE CR1 -99 1478 1406 651 320 123 45 chrX 103469383 103469830 -59130100 - L2 LINE L2 -27 3286 2805 188 364 0 18 chrX 103469851 103469905 -59130025 - L3 LINE CR1 -257 1320 1268 662 274 146 0 chrX 103469905 103470131 -59129799 + MIR SINE MIR 2 260 -2 188 350 0 50 chrX 103470252 103470352 -59129578 - L3b LINE CR1 -195 1388 1294 438 331 94 20 chrX 103470670 103470924 -59129006 + LTR16A LTR ERVL 7 279 -171 218 254 0 56 chrX 103471147 103471218 -59128712 - L3b LINE CR1 -383 1200 1134 255 200 106 35 chrX 103472032 103472117 -59127813 + L1ME4a LINE L1 5954 6044 -77 255 31 0 0 chrX 103472218 103472250 -59127680 + (CATA)n Simple_repeat Simple_repeat 1 32 0 237 273 45 73 chrX 103472296 103472406 -59127524 - MIR SINE MIR -85 123 17 22 56 0 0 chrX 103472813 103472849 -59127081 + AT_rich Low_complexity Low_complexity 1 36 0 2507 40 0 3 chrX 103473093 103473390 -59126540 + AluY SINE Alu 2 297 -14 278 254 0 0 chrX 103473541 103473596 -59126334 + L2 LINE L2 3251 3305 -8 1162 250 38 34 chrX 103473670 103474057 -59125873 + MLT1J1 LTR MaLR 1 445 -1 23 0 0 0 chrX 103474857 103474880 -59125050 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chrX 103474916 103474962 -59124968 + AT_rich Low_complexity Low_complexity 1 46 0 27 49 0 0 chrX 103475600 103475641 -59124289 + AT_rich Low_complexity Low_complexity 1 41 0 1115 281 79 12 chrX 103475650 103476197 -59123733 - L1MEc LINE L1 -4974 1422 666 1099 320 32 41 chrX 103476199 103476784 -59123146 - L1MEc LINE L1 -5780 616 37 21 36 0 0 chrX 103477912 103477940 -59121990 + AT_rich Low_complexity Low_complexity 1 28 0 699 228 69 89 chrX 103479364 103479610 -59120320 + MIR SINE MIR 1 241 -21 1996 123 3 13 chrX 103481678 103481987 -59117943 - AluSq SINE Alu -4 309 4 334 111 0 0 chrX 103482008 103482062 -59117868 - L1MA5 LINE L1 -4 6296 6243 203 149 54 0 chrX 103482091 103482165 -59117765 + (TA)n Simple_repeat Simple_repeat 1 78 0 493 196 31 0 chrX 103482186 103482283 -59117647 + L1MA7 LINE L1 5782 5881 -419 228 125 25 0 chrX 103483527 103483567 -59116363 + L1MA7 LINE L1 6066 6106 -185 1113 121 39 0 chrX 103483599 103483781 -59116149 + L1MA7 LINE L1 6101 6289 -2 393 22 0 0 chrX 103483781 103483827 -59116103 + (CA)n Simple_repeat Simple_repeat 2 47 0 891 226 73 56 chrX 103484097 103484385 -59115545 - L2 LINE L2 0 3313 3021 919 244 107 4 chrX 103484389 103484623 -59115307 - MIR SINE MIR -2 260 3 554 280 119 21 chrX 103484771 103485007 -59114923 - MIR SINE MIR -3 259 1 1881 177 61 6 chrX 103485192 103485537 -59114393 - MLT1A1 LTR MaLR -1 364 1 229 259 0 0 chrX 103486070 103486136 -59113794 + CT-rich Low_complexity Low_complexity 1 108 0 21 36 0 0 chrX 103486601 103486629 -59113301 + AT_rich Low_complexity Low_complexity 1 28 0 285 172 0 0 chrX 103487467 103487531 -59112399 + GA-rich Low_complexity Low_complexity 2 65 0 243 355 20 7 chrX 103487545 103487697 -59112233 - L2 LINE L2 -745 2569 2416 21 0 0 0 chrX 103489040 103489061 -59110869 + AT_rich Low_complexity Low_complexity 1 21 0 180 152 0 0 chrX 103489336 103489369 -59110561 + (TG)n Simple_repeat Simple_repeat 2 34 0 215 136 0 68 chrX 103489370 103489414 -59110516 + (CAGAGA)n Simple_repeat Simple_repeat 4 44 0 251 274 119 12 chrX 103490537 103490621 -59109309 - MIR SINE MIR -85 123 31 1123 275 37 27 chrX 103490629 103491032 -59108898 + MLT1I LTR MaLR 1 407 -2 4445 90 37 8 chrX 103491245 103491913 -59108017 - L1PB2 LINE L1 -3 6148 5461 482 282 16 0 chrX 103492356 103492480 -59107450 - MIR3 SINE MIR 0 208 83 522 230 70 37 chrX 103492663 103492850 -59107080 - MLT1J LTR MaLR -16 495 303 849 247 32 27 chrX 103493879 103494098 -59105832 + MER58A DNA MER1_type 1 220 -4 989 321 122 53 chrX 103494192 103494327 -59105603 - L2 LINE L2 -452 2862 2738 1843 180 0 3 chrX 103494327 103494627 -59105303 - AluJb SINE Alu -13 299 1 989 321 122 53 chrX 103494627 103495659 -59104271 - L2 LINE L2 -576 2738 1614 5728 111 35 0 chrX 103496445 103497743 -59102187 - L1PA13 LINE L1 0 6163 4836 2093 64 0 0 chrX 103499150 103499415 -59100515 - L1PA3 LINE L1 -1 6154 5890 222 62 0 0 chrX 103500071 103500103 -59099827 + L2 LINE L2 3282 3313 0 486 324 84 17 chrX 103500834 103501072 -59098858 - MIR SINE MIR -7 255 2 21 0 0 0 chrX 103502090 103502111 -59097819 + AT_rich Low_complexity Low_complexity 1 21 0 865 301 101 18 chrX 103502526 103503088 -59096842 - L1ME4a LINE L1 -8 6182 5574 241 333 0 0 chrX 103503221 103503341 -59096589 - L1ME4a LINE L1 -801 5414 5295 412 210 40 0 chrX 103503356 103503456 -59096474 - L1ME1 LINE L1 -9 6157 6054 * 1426 199 65 13 chrX 103503448 103503845 -59096085 - L1ME4a LINE L1 -1346 4869 4452 3963 242 148 18 chrX 103503851 103504399 -59095531 - L1ME4a LINE L1 -2075 4140 3665 2264 82 0 0 chrX 103504399 103504702 -59095228 - AluY SINE Alu -8 303 1 3963 242 148 18 chrX 103504702 103505808 -59094122 - L1ME4a LINE L1 -2550 3665 2271 271 250 80 0 chrX 103505917 103506005 -59093925 - L1ME4a LINE L1 -4639 1576 1482 771 256 99 16 chrX 103506237 103506619 -59093311 - L1ME4a LINE L1 -5268 1128 715 3861 78 17 6 chrX 103506629 103507169 -59092761 - L1PA10 LINE L1 -2 6166 5621 2455 116 6 1 chrX 103507169 103507735 -59092195 + L1PA10 LINE L1 5043 5609 -559 1445 306 30 51 chrX 103507735 103508447 -59091483 - L1ME4a LINE L1 -5671 725 29 265 263 68 73 chrX 103508443 103509020 -59090910 - L1M4 LINE L1 -2699 3447 2874 * 1709 183 7 0 chrX 103509025 103509309 -59090621 + AluJb SINE Alu 1 286 -26 30 69 0 0 chrX 103509367 103509425 -59090505 + AT_rich Low_complexity Low_complexity 1 58 0 970 135 25 6 chrX 103509425 103509588 -59090342 + L1MD1 LINE L1 6063 6228 -14 27 0 0 0 chrX 103509629 103509656 -59090274 + AT_rich Low_complexity Low_complexity 1 27 0 15487 218 24 12 chrX 103509656 103512082 -59087848 - L1PA15 LINE L1 -7 6809 4415 591 27 0 0 chrX 103512082 103512155 -59087775 + (TG)n Simple_repeat Simple_repeat 2 74 0 15487 218 24 12 chrX 103512155 103515171 -59084759 - L1PA15 LINE L1 -2401 4415 1292 273 352 28 0 chrX 103515196 103515338 -59084592 - L1M4 LINE L1 -3316 2830 2685 401 302 89 55 chrX 103515464 103515901 -59084029 - L1M4 LINE L1 -1081 5065 4614 1898 179 23 1 chrX 103515911 103516279 -59083651 + L1PA16 LINE L1 5709 6118 -41 371 245 21 49 chrX 103516576 103516719 -59083211 + MER103 DNA DNA 12 150 -16 4211 203 38 49 chrX 103516802 103516871 -59083059 - L1M4 LINE L1 -2397 3749 3681 234 0 0 0 chrX 103516871 103516897 -59083033 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4211 203 38 49 chrX 103516897 103518045 -59081885 - L1M4 LINE L1 -2465 3681 2546 1986 199 17 0 chrX 103518043 103518464 -59081466 + L1MA9 LINE L1 4947 5374 -772 * 4011 182 37 30 chrX 103518453 103518604 -59081326 + L1MA9 LINE L1 5318 5466 -846 2743 115 5 39 chrX 103518604 103519046 -59080884 - MSTA LTR MaLR -1 427 1 4011 182 37 30 chrX 103519046 103519833 -59080097 + L1MA9 LINE L1 5466 6263 -49 243 306 0 0 chrX 103519863 103519925 -59080005 + MIR SINE MIR 201 262 0 185 294 165 9 chrX 103519929 103520038 -59079892 + L2 LINE L2 2935 3060 -212 258 269 21 32 chrX 103520101 103520194 -59079736 - MER20B DNA MER1_type -691 92 1 255 313 168 15 chrX 103520642 103520773 -59079157 + MIR SINE MIR 23 173 -89 617 225 6 35 chrX 103520789 103520958 -59078972 + MER96B DNA MER1_type? 17 180 -237 535 313 76 29 chrX 103521410 103521726 -59078204 - L1ME LINE L1 -297 5824 5494 235 175 58 42 chrX 103521740 103521860 -59078070 + (TTAA)n Simple_repeat Simple_repeat 1 122 0 59 53 0 0 chrX 103521876 103521970 -59077960 + AT_rich Low_complexity Low_complexity 1 94 0 561 281 46 54 chrX 103521980 103522545 -59077385 - L1ME LINE L1 -422 5699 5129 2192 248 67 68 chrX 103522570 103523499 -59076431 + L1MA5 LINE L1 2 929 -6280 13055 198 51 18 chrX 103523607 103528446 -59071484 + L1MA5 LINE L1 2372 7357 -5 389 236 38 0 chrX 103528711 103528817 -59071113 - L1 LINE L1 -1300 4846 4737 255 61 0 0 chrX 103528903 103528936 -59070994 + (A)n Simple_repeat Simple_repeat 1 33 0 277 355 35 43 chrX 103528940 103529196 -59070734 - L2 LINE L2 -346 2968 2715 32 43 0 0 chrX 103529400 103529446 -59070484 + AT_rich Low_complexity Low_complexity 1 46 0 793 115 22 7 chrX 103530550 103530689 -59069241 + L1MB4 LINE L1 6040 6180 0 1677 218 74 38 chrX 103531597 103531815 -59068115 - L1ME2 LINE L1 -11 6153 5944 6852 145 37 10 chrX 103531815 103533013 -59066917 + Tigger3b DNA MER2_type 2 1231 0 1677 218 74 38 chrX 103533013 103533350 -59066580 - L1ME2 LINE L1 -220 5944 5578 1627 184 7 3 chrX 103533351 103533674 -59066256 - AluJb SINE Alu 0 324 1 8259 183 36 12 chrX 103533701 103535234 -59064696 + L1MA2 LINE L1 11 1581 -5984 6943 147 15 8 chrX 103535229 103537249 -59062681 + L1MA2 LINE L1 5689 7723 0 * 921 256 6 35 chrX 103537312 103537625 -59062305 + L1MC4 LINE L1 7739 8042 0 1428 190 28 3 chrX 103537644 103538080 -59061850 - L1ME2 LINE L1 -602 5562 5119 751 305 12 35 chrX 103538147 103538403 -59061527 + MIR SINE MIR 13 262 0 255 114 0 0 chrX 103539386 103539430 -59060500 + (CA)n Simple_repeat Simple_repeat 1 44 0 1483 76 0 14 chrX 103539507 103539718 -59060212 + L1PA13 LINE L1 5956 6163 0 382 337 70 6 chrX 103539789 103539961 -59059969 + MIR SINE MIR 3 185 -77 449 287 44 7 chrX 103540102 103540238 -59059692 + LTR16A LTR ERVL 1 141 -309 837 225 111 87 chrX 103540257 103540809 -59059121 - MER34B LTR ERV1 0 565 1 931 106 15 0 chrX 103540809 103540845 -59059085 - MER34C LTR ERV1 -547 38 1 737 260 263 16 chrX 103540882 103541266 -59058664 - L2 LINE L2 -653 2661 2183 539 286 88 11 chrX 103541454 103541636 -59058294 - MIR SINE MIR -5 257 62 557 272 103 19 chrX 103541681 103541894 -59058036 - MIR SINE MIR 0 262 32 230 254 79 0 chrX 103542608 103542671 -59057259 + L2 LINE L2 3246 3313 0 327 25 0 0 chrX 103543541 103543581 -59056349 + (TAA)n Simple_repeat Simple_repeat 2 41 0 740 284 48 98 chrX 103543784 103544241 -59055689 - L3 LINE CR1 -5 1572 1139 188 236 73 0 chrX 103544279 103544334 -59055596 + MIR SINE MIR 131 189 -73 1042 248 40 9 chrX 103544356 103544582 -59055348 - MIR SINE MIR -27 235 3 183 129 0 0 chrX 103544616 103544647 -59055283 + (TA)n Simple_repeat Simple_repeat 1 31 0 233 313 16 0 chrX 103544853 103544917 -59055013 - L2 LINE L2 -3 3269 3205 671 313 52 62 chrX 103544988 103545473 -59054457 - L2 LINE L2 -3 3310 2831 602 265 30 77 chrX 103545990 103546224 -59053706 + MIR SINE MIR 28 250 -12 346 343 50 28 chrX 103546537 103546718 -59053212 - L2 LINE L2 -35 3237 3053 829 73 0 0 chrX 103547880 103547989 -59051941 - L1PB4 LINE L1 -7 6149 6041 523 222 17 8 chrX 103548124 103548241 -59051689 - MER5A DNA MER1_type -6 183 66 224 313 36 6 chrX 103548615 103548728 -59051202 - MIR3 SINE MIR -92 116 4 486 58 0 0 chrX 103549445 103549514 -59050416 - L1PA2 LINE L1 0 6155 6087 1579 167 55 55 chrX 103549688 103549923 -59050007 - LTR37A LTR ERV1 0 426 189 1994 136 0 26 chrX 103549923 103550225 -59049705 + AluSx SINE Alu 3 296 -16 1579 167 55 55 chrX 103550225 103550408 -59049522 - LTR37A LTR ERV1 -236 190 8 503 235 73 79 chrX 103551145 103551329 -59048601 + MIR3 SINE MIR 19 198 -10 866 272 35 0 chrX 103551541 103551773 -59048157 - MIR SINE MIR -3 259 20 452 276 36 39 chrX 103552092 103552247 -59047683 + MIR3 SINE MIR 44 206 -2 210 269 17 39 chrX 103553231 103553343 -59046587 + CT-rich Low_complexity Low_complexity 2 174 0 659 268 29 43 chrX 103556043 103556252 -59043678 - MIR SINE MIR 0 262 57 185 406 150 12 chrX 103556273 103556433 -59043497 - L2 LINE L2 -225 3047 2866 846 293 8 20 chrX 103556807 103557053 -59042877 - MIR SINE MIR -8 254 12 22 0 0 0 chrX 103557610 103557632 -59042298 + AT_rich Low_complexity Low_complexity 1 22 0 682 285 33 59 chrX 103557840 103558110 -59041820 - L2 LINE L2 -2 3270 3008 221 311 38 61 chrX 103559398 103559530 -59040400 + L3b LINE CR1 1319 1447 -136 203 184 0 0 chrX 103559530 103559568 -59040362 + T-rich Low_complexity Low_complexity 1 38 0 207 176 0 0 chrX 103561044 103561078 -59038852 + GA-rich Low_complexity Low_complexity 2 35 0 252 122 0 0 chrX 103561308 103561349 -59038581 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 333 300 0 0 chrX 103561930 103562020 -59037910 - L1MC4 LINE L1 -1339 6703 6614 250 265 0 0 chrX 103562020 103562088 -59037842 + (CAGAGA)n Simple_repeat Simple_repeat 4 71 0 216 0 0 0 chrX 103562469 103562493 -59037437 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 343 308 82 41 chrX 103562549 103562695 -59037235 - L2 LINE L2 0 3272 3121 589 310 50 81 chrX 103562743 103563165 -59036765 - L2 LINE L2 -655 2659 2251 575 302 32 16 chrX 103563955 103564144 -59035786 - MIR3 SINE MIR -1 207 16 2327 103 0 0 chrX 103565148 103565459 -59034471 - AluY SINE Alu 0 311 1 3528 47 13 9 chrX 103565880 103566329 -59033601 - L1PA7 LINE L1 -2 6152 5702 612 255 88 44 chrX 103566795 103567046 -59032884 + MIR SINE MIR 1 262 0 1386 274 60 31 chrX 103567982 103568155 -59031775 + LTR16B LTR ERVL 3 170 -294 4844 110 53 9 chrX 103568155 103568902 -59031028 - LTR17 LTR ERV1 0 780 1 1386 274 60 31 chrX 103568902 103569177 -59030753 + LTR16B LTR ERVL 170 464 0 1152 220 5 0 chrX 103571347 103571565 -59028365 - MER20 DNA MER1_type 0 219 1 721 325 87 36 chrX 103572403 103572815 -59027115 + L3b LINE CR1 1143 1575 -8 213 350 20 0 chrX 103573788 103573888 -59026042 - MIR SINE MIR -13 249 148 208 242 107 67 chrX 103574234 103574383 -59025547 - L2 LINE L2 -5 3308 3154 468 172 0 0 chrX 103574756 103574843 -59025087 + CT-rich Low_complexity Low_complexity 2 88 0 243 61 0 0 chrX 103575236 103575269 -59024661 + (CA)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chrX 103575850 103575875 -59024055 + AT_rich Low_complexity Low_complexity 1 25 0 201 121 0 0 chrX 103576591 103576624 -59023306 + (CATCT)n Simple_repeat Simple_repeat 1 33 0 2467 104 17 0 chrX 103577095 103577452 -59022478 - L1MA1 LINE L1 -1 6301 5939 217 213 0 0 chrX 103578321 103578368 -59021562 + (CTA)n Simple_repeat Simple_repeat 3 49 0 2230 88 3 3 chrX 103578887 103579183 -59020747 - AluSq SINE Alu -17 296 1 11095 150 24 27 chrX 103579450 103579816 -59020114 + L1M1 LINE L1 1723 2089 -5476 1820 152 16 16 chrX 103579816 103579947 -59019983 + AluSx SINE Alu 6 136 -176 2154 89 20 33 chrX 103579947 103580250 -59019680 + AluSg SINE Alu 2 300 -10 1820 152 16 16 chrX 103580250 103580421 -59019509 + AluSx SINE Alu 135 308 -4 11095 150 24 27 chrX 103580421 103580647 -59019283 + L1M1 LINE L1 2089 2314 -5251 2616 43 0 0 chrX 103580647 103580952 -59018978 + AluY SINE Alu 4 308 -3 11095 150 24 27 chrX 103580952 103582917 -59017013 + L1M1 LINE L1 2314 4279 -3286 1953 222 158 10 chrX 103583759 103584246 -59015684 + MLT1F1 LTR MaLR 2 560 -7 11315 135 30 22 chrX 103584329 103585126 -59014804 + Tigger2 DNA MER2_type 2 792 -1926 216 0 0 0 chrX 103585126 103585150 -59014780 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 11315 135 30 22 chrX 103585150 103586238 -59013692 + Tigger2 DNA MER2_type 792 1901 -817 1281 151 37 25 chrX 103586236 103586481 -59013449 + Tigger2 DNA MER2_type 2461 2708 -10 * 324 70 0 0 chrX 103586604 103586647 -59013283 + (TG)n Simple_repeat Simple_repeat 2 44 0 2466 60 0 22 chrX 103587012 103587330 -59012600 - AluY SINE Alu 0 311 1 7296 42 26 0 chrX 103587457 103588331 -59011599 - MER11D LTR ERVK 0 897 1 16966 28 2 1 chrX 103588331 103590313 -59009617 - HERVK11D LTR ERVK 0 7752 5767 1397 197 9 22 chrX 103590797 103591117 -59008813 - L1MD1 LINE L1 0 6636 6321 1689 233 62 50 chrX 103591128 103591374 -59008556 - L1MD1 LINE L1 -1100 5440 5198 387 0 0 0 chrX 103591374 103591417 -59008513 + (TA)n Simple_repeat Simple_repeat 2 44 0 1689 233 62 50 chrX 103591417 103591574 -59008356 - L1MD1 LINE L1 -1342 5198 5044 2361 65 3 0 chrX 103591574 103591867 -59008063 - AluY SINE Alu -17 294 1 1689 233 62 50 chrX 103591867 103592119 -59007811 - L1MD1 LINE L1 -1496 5044 4776 21 0 0 0 chrX 103592160 103592181 -59007749 + AT_rich Low_complexity Low_complexity 1 21 0 236 58 58 19 chrX 103592181 103592212 -59007718 + (TA)n Simple_repeat Simple_repeat 1 54 0 2057 119 7 0 chrX 103592222 103592515 -59007415 - AluSq SINE Alu -18 295 1 947 218 4 39 chrX 103592550 103592807 -59007123 - L1MD1 LINE L1 -1800 4740 4493 * 6505 230 93 5 chrX 103592804 103594424 -59005506 - L1MD1 LINE L1 -4758 1782 20 12650 143 7 1 chrX 103594426 103597339 -59002591 - L1PA10 LINE L1 0 6168 3240 796 103 0 0 chrX 103597339 103597446 -59002484 - U6 snRNA snRNA 0 107 1 925 176 59 44 chrX 103598878 103599082 -59000848 - MER20 DNA MER1_type 0 219 13 1987 109 22 0 chrX 103599486 103599806 -59000124 - L1MA2 LINE L1 -9 6295 5969 616 198 122 27 chrX 103600625 103600847 -58999083 - LTR37A LTR ERV1 -14 412 170 2499 233 34 52 chrX 103600969 103601260 -58998670 - MER31-int LTR ERV1 -644 4292 3997 2210 91 3 13 chrX 103601260 103601567 -58998363 - AluSc SINE Alu -5 304 1 2499 233 34 52 chrX 103601567 103602021 -58997909 - MER31-int LTR ERV1 -939 3997 3561 2141 166 33 6 chrX 103602021 103602657 -58997273 - MER39 LTR ERV1 0 707 1 2063 139 3 0 chrX 103602744 103603038 -58996892 + AluSq SINE Alu 1 295 -18 340 188 50 59 chrX 103603159 103603260 -58996670 - MER31-int LTR ERV1 -1648 3288 3189 613 206 9 90 chrX 103603832 103604065 -58995865 - MER31-int LTR ERV1 -1870 3066 2853 258 281 31 10 chrX 103604328 103604424 -58995506 - MER31-int LTR ERV1 -2340 2596 2499 242 246 0 18 chrX 103604651 103604708 -58995222 + Charlie1 DNA MER1_type 40 95 -2666 * 604 215 63 37 chrX 103604692 103604883 -58995047 + Charlie1 DNA MER1_type 2551 2746 -15 566 185 25 25 chrX 103605146 103605303 -58994627 - MER31-int LTR ERV1 -3021 1915 1759 38014 84 7 10 chrX 103605333 103611494 -58988436 + L1PA6 LINE L1 11 6149 -5 33 0 0 0 chrX 103611494 103611527 -58988403 + AT_rich Low_complexity Low_complexity 1 33 0 1454 164 152 12 chrX 103612086 103612428 -58987502 - MLT1B LTR MaLR 0 390 1 686 197 171 65 chrX 103612901 103613286 -58986644 - LTR37A LTR ERV1 0 426 1 569 257 37 0 chrX 103613488 103613624 -58986306 - MIR SINE MIR -51 211 71 352 349 62 0 chrX 103613736 103613865 -58986065 - L2 LINE L2 -20 3252 3116 341 295 36 62 chrX 103613942 103614135 -58985795 - L2 LINE L2 -467 2847 2660 378 159 177 35 chrX 103614181 103614294 -58985636 - MLT1H LTR MaLR -25 524 396 2500 181 13 59 chrX 103614385 103614502 -58985428 + MLT1D LTR MaLR 1 122 -383 2464 150 26 12 chrX 103614502 103614922 -58985008 + MSTB LTR MaLR 1 426 0 2500 181 13 59 chrX 103614922 103615333 -58984597 + MLT1D LTR MaLR 122 505 0 837 209 33 30 chrX 103615333 103615545 -58984385 - MLT1H LTR MaLR -296 253 1 342 359 32 0 chrX 103615545 103615701 -58984229 - L2 LINE L2 -678 2636 2476 497 237 110 13 chrX 103615704 103615849 -58984081 - MIR SINE MIR -68 140 37 187 159 0 91 chrX 103616728 103616772 -58983158 + MIR SINE MIR 223 262 0 627 303 23 50 chrX 103616908 103617169 -58982761 - MIR SINE MIR -1 261 8 2117 196 23 28 chrX 103618112 103618540 -58981390 - MSTB LTR MaLR 0 426 1 186 255 0 0 chrX 103619419 103619470 -58980460 + (CAT)n Simple_repeat Simple_repeat 2 52 0 1493 275 141 2 chrX 103619514 103620005 -58979925 + MER69 DNA AcHobo 1 559 -1967 1892 182 45 17 chrX 103620056 103620522 -58979408 + MER69 DNA AcHobo 2046 2524 -2 505 261 43 43 chrX 103620603 103620787 -58979143 - L2 LINE L2 0 3313 3130 216 67 0 0 chrX 103622873 103622903 -58977027 + (CCTG)n Simple_repeat Simple_repeat 3 32 0 377 324 27 39 chrX 103623823 103624011 -58975919 - MIR SINE MIR -50 212 20 1002 221 19 0 chrX 103624376 103624589 -58975341 - MER20 DNA MER1_type -1 218 2 445 260 51 47 chrX 103624772 103624955 -58974975 + MIR3 SINE MIR 1 183 -25 299 314 75 38 chrX 103625258 103625417 -58974513 - L2 LINE L2 -1 3271 3107 22 35 0 0 chrX 103625514 103625543 -58974387 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chrX 103625782 103625822 -58974108 + AT_rich Low_complexity Low_complexity 1 40 0 1440 55 6 0 chrX 103625885 103626068 -58973862 - L1PA10 LINE L1 0 6168 5985 232 100 20 40 chrX 103626455 103626505 -58973425 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 207 211 0 0 chrX 103626529 103626567 -58973363 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 268 286 92 20 chrX 103627027 103627125 -58972805 + L2 LINE L2 3163 3267 -5 192 339 24 55 chrX 103628691 103628818 -58971112 - L2 LINE L2 -12 3301 3179 460 330 65 0 chrX 103628832 103629032 -58970898 + MIR SINE MIR 2 214 -48 237 317 50 20 chrX 103629135 103629236 -58970694 - L2 LINE L2 -214 3058 2955 394 281 33 20 chrX 103630779 103630932 -58968998 - MIR3 SINE MIR -15 193 39 219 69 0 0 chrX 103631261 103631290 -58968640 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chrX 103631628 103631648 -58968282 + (T)n Simple_repeat Simple_repeat 1 20 0 303 289 39 10 chrX 103632168 103632272 -58967658 + L1MC4 LINE L1 6597 6703 -1339 1366 236 53 37 chrX 103632443 103632820 -58967110 - MSTD LTR MaLR -2 394 12 2761 246 141 36 chrX 103632820 103633658 -58966272 - MSTD-int LTR MaLR -3 1732 807 1677 157 22 22 chrX 103633660 103633979 -58965951 - THE1C LTR MaLR 0 375 57 5158 207 60 101 chrX 103633979 103635703 -58964227 - THE1C-int LTR MaLR -57 1594 5 1492 208 77 21 chrX 103635709 103636084 -58963846 - MSTD LTR MaLR 0 396 1 181 225 28 113 chrX 103636247 103636318 -58963612 - L3 LINE CR1 -460 1117 1053 433 357 72 45 chrX 103636752 103637404 -58962526 + L1MEd LINE L1 67 736 -5383 930 182 33 37 chrX 103637744 103637958 -58961972 - MLT2B3 LTR ERVL -341 213 1 955 146 0 0 chrX 103638266 103638410 -58961520 + AluJb SINE Alu 159 302 -10 1023 226 169 60 chrX 103639779 103639908 -58960022 + L1MC4 LINE L1 5370 5483 -2559 1496 168 0 107 chrX 103639908 103640235 -58959695 + AluJb SINE Alu 1 292 -20 1023 226 169 60 chrX 103640235 103640690 -58959240 + L1MC4 LINE L1 5483 6018 -2024 * 1786 201 22 14 chrX 103640307 103640721 -58959209 + L1MB8 LINE L1 5635 6051 -127 763 164 7 0 chrX 103640725 103640865 -58959065 - L1MB5 LINE L1 -23 6151 6011 560 218 19 6 chrX 103640866 103641022 -58958908 + L1MB7 LINE L1 6027 6184 0 22 0 0 0 chrX 103641158 103641180 -58958750 + AT_rich Low_complexity Low_complexity 1 22 0 200 242 211 42 chrX 103641258 103641353 -58958577 - MIR3 SINE MIR -31 177 67 1837 237 41 27 chrX 103641474 103642036 -58957894 - L1ME1 LINE L1 -5 6161 5592 658 168 46 0 chrX 103642066 103642197 -58957733 - L1MC3 LINE L1 0 7785 7649 * 1002 161 18 6 chrX 103642196 103642404 -58957526 + L1ME LINE L1 5612 5821 -345 2246 112 0 0 chrX 103642404 103642698 -58957232 + AluSq SINE Alu 1 294 -19 299 193 23 23 chrX 103642699 103642787 -58957143 - L1MC3 LINE L1 -151 7634 7547 288 143 36 0 chrX 103642787 103642843 -58957087 - L1ME1 LINE L1 -564 5602 5545 249 167 0 0 chrX 103643194 103643230 -58956700 - Alu SINE Alu -132 167 132 2098 146 12 0 chrX 103643255 103643584 -58956346 - MER7A DNA MER2_type -1 345 15 715 156 21 80 chrX 103643969 103644121 -58955809 - MLT1A1 LTR MaLR -2 398 226 4023 172 25 4 chrX 103644122 103644842 -58955088 - MLT1A1-int LTR MaLR -999 736 2 1953 182 22 0 chrX 103644843 103645200 -58954730 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chrX 103647416 103647446 -58952484 + AT_rich Low_complexity Low_complexity 1 30 0 340 300 30 0 chrX 103647482 103647582 -58952348 - MIR SINE MIR -50 212 110 892 126 26 13 chrX 103647765 103647916 -58952014 + LTR65 LTR ERV1 18 170 -499 318 212 15 0 chrX 103648148 103648214 -58951716 + LTR65 LTR ERV1 560 626 -43 2662 143 38 6 chrX 103649149 103649623 -58950307 - L1MC1 LINE L1 -11 6322 5834 226 306 14 14 chrX 103649642 103649714 -58950216 - L2 LINE L2 0 3272 3201 5285 175 45 11 chrX 103649867 103651031 -58948899 - L1MC2 LINE L1 -50 6294 5090 5843 182 29 20 chrX 103651038 103651131 -58948799 + L1M2 LINE L1 2677 2768 -4080 786 50 0 0 chrX 103651131 103651230 -58948700 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 5843 182 29 20 chrX 103651230 103652665 -58947265 + L1M2 LINE L1 2768 4219 -2629 4204 127 38 4 chrX 103652665 103653368 -58946562 + L1MA4A LINE L1 5571 6302 -1 3966 211 84 66 chrX 103653368 103653533 -58946397 - L1MCb LINE L1 -4002 2562 2402 2056 138 69 20 chrX 103653533 103653939 -58945991 + MSTA LTR MaLR 3 428 0 3966 211 84 66 chrX 103653939 103655126 -58944804 - L1MCb LINE L1 -4162 2402 1239 186 103 0 0 chrX 103655126 103655155 -58944775 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3966 211 84 66 chrX 103655155 103655687 -58944243 - L1MCb LINE L1 -5325 1239 718 1506 177 37 19 chrX 103655687 103655958 -58943972 - AluJo SINE Alu -30 282 7 3966 211 84 66 chrX 103655958 103656413 -58943517 - L1MCb LINE L1 -5846 718 6 446 149 32 0 chrX 103656578 103656672 -58943258 + L1MA10 LINE L1 6235 6331 -3 188 293 19 66 chrX 103656989 103657095 -58942835 + L2 LINE L2 3180 3280 -33 5858 93 39 15 chrX 103657130 103658638 -58941292 + L1PA15 LINE L1 4616 6157 -8 215 288 39 65 chrX 103659533 103659686 -58940244 - MIR SINE MIR -66 196 48 6734 21 0 0 chrX 103660620 103661398 -58938532 - L1PA2 LINE L1 -2 6153 5376 1431 11 0 6 chrX 103661398 103661581 -58938349 + L1P LINE L1 3108 3289 -2857 22 0 0 0 chrX 103662358 103662380 -58937550 + AT_rich Low_complexity Low_complexity 1 22 0 354 283 171 28 chrX 103663004 103663182 -58936748 + MIR SINE MIR 19 223 -39 362 282 40 16 chrX 103663464 103663588 -58936342 - L2 LINE L2 -21 3251 3125 3003 248 78 23 chrX 103663879 103665040 -58934890 + L2 LINE L2 2089 3308 -5 437 306 77 67 chrX 103665189 103665516 -58934414 - MER102a DNA MER1_type 0 330 1 783 196 7 0 chrX 103666254 103666397 -58933533 - MLT1A1 LTR MaLR -2 363 220 1528 142 90 0 chrX 103666397 103666665 -58933265 - MLT1A1-int LTR MaLR -1443 292 1 1681 179 53 34 chrX 103666665 103666945 -58932985 - MLT1A1 LTR MaLR 0 365 75 1763 166 7 19 chrX 103666945 103667253 -58932677 - AluJo SINE Alu -8 304 1 1681 179 53 34 chrX 103667253 103667330 -58932600 - MLT1A1 LTR MaLR -290 75 1 297 0 0 0 chrX 103668719 103668752 -58931178 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 312 27 0 0 chrX 103668751 103668788 -58931142 + (TG)n Simple_repeat Simple_repeat 2 38 0 336 200 0 0 chrX 103668788 103668858 -58931072 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 80 0 0 chrX 103670022 103670072 -58929858 + AT_rich Low_complexity Low_complexity 1 50 0 436 278 103 34 chrX 103670419 103670653 -58929277 + L1MC4 LINE L1 7793 8042 0 1674 175 36 0 chrX 103671527 103671712 -58928218 - AluJo SINE Alu 0 319 118 369 0 0 0 chrX 103671712 103671753 -58928177 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1674 175 36 0 chrX 103671753 103671875 -58928055 - AluJo SINE Alu -201 118 2 1752 168 13 22 chrX 103672261 103672576 -58927354 + AluJo SINE Alu 1 312 0 205 259 56 0 chrX 103673381 103673435 -58926495 - L2 LINE L2 -5 3308 3252 186 405 13 0 chrX 103673486 103673565 -58926365 - L2 LINE L2 -43 3229 3150 216 175 0 0 chrX 103674524 103674564 -58925366 + L2 LINE L2 3274 3313 0 22 0 0 0 chrX 103675494 103675516 -58924414 + AT_rich Low_complexity Low_complexity 1 22 0 238 245 0 20 chrX 103677313 103677362 -58922568 - L2 LINE L2 -86 3186 3139 377 280 117 44 chrX 103677485 103677701 -58922229 - MIR SINE MIR -26 236 4 227 260 92 75 chrX 103678278 103678451 -58921479 + L2 LINE L2 2715 2890 -424 358 266 50 65 chrX 103678661 103678800 -58921130 + L2 LINE L2 3167 3303 -10 234 0 0 0 chrX 103679681 103679707 -58920223 + (TC)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chrX 103681505 103681531 -58918399 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2435 96 0 0 chrX 103682168 103682480 -58917450 + AluSx SINE Alu 1 312 0 378 0 0 0 chrX 103682492 103682534 -58917396 + (CA)n Simple_repeat Simple_repeat 2 43 0 868 194 53 0 chrX 103684381 103684551 -58915379 - MER58C DNA MER1_type 0 215 37 468 322 6 17 chrX 103684778 103684958 -58914972 + GA-rich Low_complexity Low_complexity 2 179 0 1598 163 0 19 chrX 103685831 103686101 -58913829 + AluJo SINE Alu 43 307 -5 31 0 0 0 chrX 103687788 103687819 -58912111 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 103690834 103690856 -58909074 + AT_rich Low_complexity Low_complexity 1 22 0 188 275 0 0 chrX 103692640 103692680 -58907250 - MIR SINE MIR -6 256 217 * 207 315 87 22 chrX 103692647 103692739 -58907191 - L2 LINE L2 -19 3294 3197 1807 160 0 11 chrX 103693011 103693293 -58906637 + AluJb SINE Alu 1 279 -33 193 305 140 24 chrX 103693363 103693527 -58906403 - L2 LINE L2 -640 2674 2492 2234 92 3 25 chrX 103693643 103693960 -58905970 - AluSg SINE Alu 0 310 1 213 300 22 33 chrX 103694019 103694109 -58905821 + L2 LINE L2 3224 3312 -1 506 187 84 65 chrX 103694737 103694892 -58905038 + MIR SINE MIR 105 262 0 413 233 39 10 chrX 103696062 103696165 -58903765 - MIR3 SINE MIR -11 197 92 451 222 252 0 chrX 103697534 103697669 -58902261 - MIR3 SINE MIR -3 205 37 486 141 0 0 chrX 103697702 103697780 -58902150 - AluJ/FRAM SINE Alu -10 302 225 1465 165 0 60 chrX 103697935 103698220 -58901710 - AluJb SINE Alu -44 268 1 785 238 44 73 chrX 103698573 103698821 -58901109 + MIR SINE MIR 22 262 0 21 0 0 0 chrX 103699014 103699035 -58900895 + AT_rich Low_complexity Low_complexity 1 21 0 1446 309 122 5 chrX 103699321 103699888 -58900042 + L3 LINE CR1 925 1557 -20 248 141 42 14 chrX 103700015 103700086 -58899844 + CT-rich Low_complexity Low_complexity 1 73 0 189 240 80 0 chrX 103700110 103700160 -58899770 - MIR SINE MIR -12 250 197 305 329 0 88 chrX 103700396 103700448 -58899482 - MIR SINE MIR -63 145 90 2850 7 0 0 chrX 103700448 103700756 -58899174 + AluYb8 SINE Alu 1 308 -10 305 329 0 88 chrX 103700756 103700840 -58899090 - MIR SINE MIR -118 90 21 404 226 52 9 chrX 103701019 103701134 -58898796 - L2 LINE L2 -20 3293 3174 559 400 28 23 chrX 103703755 103704147 -58895783 - L2 LINE L2 -10 3262 2869 3747 175 16 4 chrX 103704517 103705226 -58894704 - L1MB5 LINE L1 -9 6165 5449 260 26 0 26 chrX 103705424 103705462 -58894468 + (CA)n Simple_repeat Simple_repeat 2 38 0 2479 74 0 0 chrX 103705653 103705963 -58893967 - AluY SINE Alu -1 310 1 472 332 45 15 chrX 103706856 103707055 -58892875 - MIR SINE MIR -1 261 57 489 296 150 5 chrX 103707489 103707702 -58892228 - MLT1J LTR MaLR -104 407 164 759 240 145 25 chrX 103707706 103707948 -58891982 - MLT1E LTR MaLR -8 585 315 587 251 25 25 chrX 103707964 103708127 -58891803 - MLT1J LTR MaLR -346 165 3 280 341 45 8 chrX 103708131 103708263 -58891667 - MIR SINE MIR -53 209 73 742 299 33 24 chrX 103710330 103710572 -58889358 - MIR SINE MIR -16 246 10 3574 52 2 0 chrX 103710675 103711116 -58888814 + L1PA6 LINE L1 5712 6153 -1 274 60 20 20 chrX 103712575 103712625 -58887305 + (GA)n Simple_repeat Simple_repeat 1 50 0 40 42 0 14 chrX 103713696 103713710 -58886220 + AT_rich Low_complexity Low_complexity 1 14 -57 2203 110 0 3 chrX 103713710 103714000 -58885930 + AluSx SINE Alu 1 289 -23 40 42 0 14 chrX 103714000 103714057 -58885873 + AT_rich Low_complexity Low_complexity 14 71 0 395 267 17 52 chrX 103714904 103715060 -58884870 + MIR SINE MIR 2 147 -61 716 192 113 19 chrX 103715060 103715390 -58884540 - MSTB2 LTR MaLR 0 457 1 222 234 160 11 chrX 103715393 103715487 -58884443 + MIR SINE MIR 147 254 -8 1706 120 0 7 chrX 103715505 103715789 -58884141 - Tigger2 DNA MER2_type -170 2548 2267 313 215 46 0 chrX 103715773 103715838 -58884092 - Tigger2 DNA MER2_type -2649 69 2 * 338 252 21 4 chrX 103716648 103716735 -58883195 + MIR SINE MIR 72 162 -46 400 309 222 10 chrX 103716821 103717028 -58882902 + MIR SINE MIR 6 256 -6 198 304 95 7 chrX 103717182 103717330 -58882600 + L2 LINE L2 3014 3174 -139 40504 36 23 1 chrX 103718177 103724220 -58875710 + L1PA3 LINE L1 1 6177 0 339 164 115 0 chrX 103724329 103724390 -58875540 - L2 LINE L2 0 3313 3246 1673 176 59 9 chrX 103724976 103725300 -58874630 + MER58B DNA MER1_type 2 341 0 441 234 213 0 chrX 103725347 103725487 -58874443 + MIR SINE MIR 78 248 -14 239 240 39 0 chrX 103726218 103726322 -58873608 + GA-rich Low_complexity Low_complexity 3 110 0 351 340 47 28 chrX 103726329 103726756 -58873174 + L1MC4a LINE L1 5476 5910 -1898 16508 93 9 21 chrX 103726762 103730063 -58869867 - L1PA7 LINE L1 -5 6149 2877 7000 31 5 0 chrX 103730070 103730936 -58868994 - L1PA4 LINE L1 -4 6151 5282 13377 134 13 115 chrX 103730937 103734190 -58865740 - L1PA7 LINE L1 -3225 2921 1 441 228 38 14 chrX 103734425 103734621 -58865309 - L1M LINE L1 -739 5425 5218 811 298 177 60 chrX 103735575 103736287 -58863643 - L3 LINE CR1 -15 1562 768 290 289 42 48 chrX 103736727 103736893 -58863037 - L3 LINE CR1 -832 745 581 506 247 104 6 chrX 103736951 103737133 -58862797 - MER3 DNA MER1_type -1 208 9 417 289 153 11 chrX 103737170 103737360 -58862570 - L3 LINE CR1 -986 591 375 1327 141 0 33 chrX 103737363 103737576 -58862354 - AluJb SINE Alu -23 289 84 1739 252 41 12 chrX 103737589 103738104 -58861826 - MLT1F LTR MaLR -2 540 11 1121 131 0 0 chrX 103738142 103738295 -58861635 + AluSg/x SINE Alu 133 285 -25 239 93 23 0 chrX 103738298 103738341 -58861589 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 307 330 150 6 chrX 103738341 103738514 -58861416 - L3 LINE CR1 -1195 382 185 32 67 0 0 chrX 103738623 103738683 -58861247 + AT_rich Low_complexity Low_complexity 1 60 0 697 176 41 53 chrX 103739062 103739232 -58860698 - MER69A DNA AcHobo 0 177 10 978 198 53 26 chrX 103740946 103741173 -58858757 + MIR SINE MIR 28 260 -2 221 234 39 13 chrX 103743543 103743620 -58856310 + G-rich Low_complexity Low_complexity 6 84 0 21 0 0 0 chrX 103744807 103744828 -58855102 + AT_rich Low_complexity Low_complexity 1 21 0 201 94 0 0 chrX 103747296 103747328 -58852602 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 358 142 26 45 chrX 103747327 103747482 -58852448 + (TA)n Simple_repeat Simple_repeat 1 152 0 499 35 76 41 chrX 103747512 103747684 -58852246 + (TA)n Simple_repeat Simple_repeat 2 179 0 208 245 136 109 chrX 103748190 103748374 -58851556 + MER5A DNA MER1_type 1 189 0 705 266 71 0 chrX 103750330 103750484 -58849446 - MIR3 SINE MIR -14 194 30 473 81 40 0 chrX 103751157 103751231 -58848699 + MADE1 DNA Mariner 3 79 -1 2048 81 106 0 chrX 103751332 103751615 -58848315 + AluSp SINE Alu 1 313 0 2773 46 9 3 chrX 103751914 103752261 -58847669 + L1PA5 LINE L1 5804 6152 -2 412 295 9 18 chrX 103752849 103752961 -58846969 - L2 LINE L2 -4 3309 3199 1678 160 78 22 chrX 103753061 103753380 -58846550 - MER2 DNA MER2_type -8 337 1 188 333 8 95 chrX 103753431 103753557 -58846373 - L2 LINE L2 -185 3087 2973 1504 194 7 29 chrX 103754012 103754321 -58845609 + AluJo SINE Alu 1 302 -10 545 211 9 3 chrX 103754941 103755064 -58844866 - L1ME1 LINE L1 -1 6333 6054 * 2446 241 70 69 chrX 103755059 103755713 -58844217 - L1MCc LINE L1 -4336 2786 2135 249 33 0 0 chrX 103755713 103755743 -58844187 + (TG)n Simple_repeat Simple_repeat 2 31 0 2446 241 70 69 chrX 103755743 103756839 -58843091 - L1MCc LINE L1 -4987 2135 808 776 285 40 43 chrX 103757095 103757182 -58842748 - L1MCc LINE L1 -6055 368 282 475 105 0 13 chrX 103757182 103757258 -58842672 + L1MA3 LINE L1 6231 6305 0 776 285 40 43 chrX 103757258 103757521 -58842409 - L1MCc LINE L1 -6141 282 19 306 325 0 0 chrX 103757798 103757912 -58842018 + L1ME LINE L1 5536 5649 -472 578 295 66 29 chrX 103757965 103758209 -58841721 + MIR SINE MIR 7 259 -3 292 319 92 0 chrX 103759221 103759340 -58840590 + MIR3 SINE MIR 61 190 -18 181 138 0 0 chrX 103759343 103759372 -58840558 + L2 LINE L2 3211 3239 -33 21 36 0 0 chrX 103760890 103760918 -58839012 + AT_rich Low_complexity Low_complexity 1 28 0 222 222 0 0 chrX 103762092 103762146 -58837784 + (TA)n Simple_repeat Simple_repeat 1 54 0 27 0 0 0 chrX 103763001 103763028 -58836902 + AT_rich Low_complexity Low_complexity 1 27 0 368 279 26 84 chrX 103763135 103763325 -58836605 - MIR SINE MIR -81 181 3 233 329 12 24 chrX 103764309 103764394 -58835536 + L2 LINE L2 3200 3283 -30 699 52 0 0 chrX 103765248 103765344 -58834586 + (TG)n Simple_repeat Simple_repeat 1 96 0 713 169 105 12 chrX 103766709 103766881 -58833049 + MER53 DNA DNA 1 188 -1 819 277 45 21 chrX 103768116 103768358 -58831572 - MIR SINE MIR -10 252 5 239 305 114 23 chrX 103769073 103769204 -58830726 + MIR SINE MIR 10 152 -110 319 299 51 8 chrX 103769405 103769522 -58830408 - MIR3 SINE MIR -22 186 65 2676 85 6 0 chrX 103770321 103770674 -58829256 - THE1A LTR MaLR 0 355 1 11513 89 10 9 chrX 103770678 103772252 -58827678 - THE1A-int LTR MaLR -4 1576 1 639 82 0 62 chrX 103772260 103772357 -58827573 - THE1A LTR MaLR -5 350 260 258 319 0 22 chrX 103772446 103772537 -58827393 - MER5B DNA MER1_type -2 176 88 672 209 20 85 chrX 103774417 103774618 -58825312 + MER5A DNA MER1_type 2 189 0 208 147 0 0 chrX 103774780 103774814 -58825116 + (CA)n Simple_repeat Simple_repeat 1 34 0 619 205 268 26 chrX 103776071 103776261 -58823669 + MIR SINE MIR 23 258 -4 22 70 0 0 chrX 103777343 103777386 -58822544 + AT_rich Low_complexity Low_complexity 1 43 0 572 293 123 14 chrX 103778077 103778289 -58821641 + MIR SINE MIR 3 237 -25 646 217 21 19 chrX 103779468 103779636 -58820294 + L1ME1 LINE L1 6008 6334 0 206 288 34 103 chrX 103779767 103779913 -58820017 + MIR3 SINE MIR 23 158 -50 524 254 116 28 chrX 103781302 103781483 -58818447 - MIR SINE MIR -13 249 53 3844 174 48 24 chrX 103781662 103781959 -58817971 - L1MB7 LINE L1 -1 6183 5895 523 28 127 0 chrX 103781959 103782030 -58817900 + MADE1 DNA Mariner 1 80 0 3844 174 48 24 chrX 103782030 103782571 -58817359 - L1MB7 LINE L1 -289 5895 5325 1460 187 122 23 chrX 103782573 103782968 -58816962 - L1MB7 LINE L1 -887 5259 4826 2124 89 0 21 chrX 103783047 103783327 -58816603 + AluSg SINE Alu 1 274 -36 420 55 0 0 chrX 103783328 103783383 -58816547 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 342 45 0 0 chrX 103784588 103784632 -58815298 + (CA)n Simple_repeat Simple_repeat 2 45 0 523 314 153 14 chrX 103784634 103784921 -58815009 - L3b LINE CR1 -121 1462 1136 22 0 0 0 chrX 103785680 103785702 -58814228 + AT_rich Low_complexity Low_complexity 1 22 0 255 103 0 0 chrX 103785838 103785877 -58814053 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 200 44 0 chrX 103786114 103786159 -58813771 + CT-rich Low_complexity Low_complexity 3 49 0 192 97 0 0 chrX 103787270 103787301 -58812629 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 255 301 53 15 chrX 103787389 103787595 -58812335 + L1M4 LINE L1 2375 2588 -3558 354 351 21 8 chrX 103787719 103787958 -58811972 + L1M4 LINE L1 2685 2926 -3220 242 188 62 0 chrX 103788221 103788269 -58811661 + L2 LINE L2 3214 3264 -8 23 86 0 0 chrX 103789295 103789353 -58810577 + AT_rich Low_complexity Low_complexity 1 58 0 232 323 0 20 chrX 103790663 103790762 -58809168 + CT-rich Low_complexity Low_complexity 2 98 0 216 0 0 0 chrX 103792756 103792780 -58807150 + (CA)n Simple_repeat Simple_repeat 2 25 0 416 279 139 0 chrX 103792838 103792960 -58806970 - L2 LINE L2 -9 3263 3125 21 0 0 0 chrX 103794819 103794840 -58805090 + AT_rich Low_complexity Low_complexity 1 21 0 263 324 56 19 chrX 103795110 103795218 -58804712 - L2 LINE L2 -2 3311 3200 212 0 0 35 chrX 103796910 103796939 -58802991 + (TTA)n Simple_repeat Simple_repeat 1 28 0 2809 116 11 19 chrX 103797211 103797687 -58802243 + L1MA8 LINE L1 5815 6286 -5 3402 166 18 5 chrX 103798232 103798836 -58801094 + L1MD3 LINE L1 7370 7981 -14 27 0 0 0 chrX 103799480 103799507 -58800423 + AT_rich Low_complexity Low_complexity 1 27 0 1453 235 62 42 chrX 103800125 103800576 -58799354 - MLT1C LTR MaLR 0 467 8 26 88 0 0 chrX 103801295 103801363 -58798567 + AT_rich Low_complexity Low_complexity 1 68 0 27 62 0 0 chrX 103801592 103801640 -58798290 + AT_rich Low_complexity Low_complexity 1 48 0 639 71 0 0 chrX 103802326 103802410 -58797520 + L1PA7 LINE L1 6071 6154 0 359 278 26 35 chrX 103804724 103804839 -58795091 + MIR SINE MIR 20 133 -75 1741 149 60 0 chrX 103806070 103806361 -58793569 - AluSx SINE Alu 0 307 1 239 250 55 78 chrX 103807122 103807250 -58792680 - MIR SINE MIR -46 216 92 390 264 27 9 chrX 103807361 103807471 -58792459 + L2 LINE L2 2177 2288 -1026 286 191 37 0 chrX 103807659 103807795 -58792135 + (TA)n Simple_repeat Simple_repeat 2 142 0 213 39 0 0 chrX 103807796 103807822 -58792108 + (TG)n Simple_repeat Simple_repeat 2 27 0 226 125 31 47 chrX 103808010 103808074 -58791856 + A-rich Low_complexity Low_complexity 5 67 0 2006 196 100 6 chrX 103808149 103808907 -58791023 + L1MB8 LINE L1 4925 5769 -397 1725 157 60 20 chrX 103808908 103809258 -58790672 + L1MB8 LINE L1 5815 6178 0 235 191 0 0 chrX 103809304 103809346 -58790584 - MER5A DNA MER1_type -147 42 1 251 81 27 0 chrX 103809843 103809880 -58790050 + MADE1 DNA Mariner 1 38 -42 * 2251 79 57 6 chrX 103809879 103810197 -58789733 - THE1B LTR MaLR -30 334 1 10835 102 29 1 chrX 103810197 103811733 -58788197 - THE1B-int LTR MaLR 0 1580 2 2501 87 8 50 chrX 103811734 103812114 -58787816 - THE1B LTR MaLR 0 364 1 809 218 0 31 chrX 103812860 103813053 -58786877 - MER5A DNA MER1_type 0 189 3 573 343 14 62 chrX 103813310 103813599 -58786331 - L2 LINE L2 0 3272 2998 718 315 50 4 chrX 103815844 103816082 -58783848 + MIR SINE MIR 6 254 -8 297 0 0 0 chrX 103816634 103816667 -58783263 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 25 0 0 0 chrX 103817151 103817176 -58782754 + AT_rich Low_complexity Low_complexity 1 25 0 1767 166 10 20 chrX 103817828 103818124 -58781806 + AluJo SINE Alu 1 293 -19 219 284 12 12 chrX 103818757 103818838 -58781092 + CT-rich Low_complexity Low_complexity 5 85 0 190 283 67 0 chrX 103820743 103820803 -58779127 - L2 LINE L2 -12 3260 3197 1826 109 4 4 chrX 103821002 103821259 -58778671 + AluSx SINE Alu 47 303 -9 387 0 0 0 chrX 103821422 103821465 -58778465 + (CA)n Simple_repeat Simple_repeat 2 44 0 376 252 19 19 chrX 103821468 103821571 -58778359 - MIR SINE MIR -88 174 72 1854 124 3 31 chrX 103823905 103824196 -58775734 + MER1B DNA MER1_type 57 339 0 184 235 0 0 chrX 103825739 103825773 -58774157 - L2 LINE L2 -17 3296 3263 261 133 0 0 chrX 103825802 103825847 -58774083 - L1MA2 LINE L1 -4 6300 6256 573 299 75 17 chrX 103825871 103826045 -58773885 - MIR SINE MIR -75 187 4 402 21 0 0 chrX 103828034 103828081 -58771849 + (TG)n Simple_repeat Simple_repeat 2 48 0 512 180 0 0 chrX 103828443 103828532 -58771398 + AluY SINE Alu 211 299 -12 3600 113 14 51 chrX 103831789 103832415 -58767515 - LTR26 LTR ERV1 0 603 1 239 227 0 0 chrX 103833588 103833632 -58766298 + Charlie4 DNA MER1_type 1 44 -1917 32 86 0 0 chrX 103833752 103833833 -58766097 + AT_rich Low_complexity Low_complexity 1 81 0 3883 188 77 17 chrX 103834074 103835057 -58764873 - Charlie1 DNA MER1_type 0 2761 1720 189 0 0 0 chrX 103835109 103835130 -58764800 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 406 375 12 12 chrX 103836630 103836790 -58763140 + MIR3 SINE MIR 20 179 -29 27 29 0 0 chrX 103837517 103837551 -58762379 + AT_rich Low_complexity Low_complexity 1 34 0 239 269 0 0 chrX 103837743 103837795 -58762135 - L2 LINE L2 0 3313 3262 22 35 0 0 chrX 103838579 103838608 -58761322 + AT_rich Low_complexity Low_complexity 1 29 0 321 246 148 8 chrX 103839002 103839124 -58760806 - L2 LINE L2 -1286 2028 1890 21 36 0 0 chrX 103839683 103839711 -58760219 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrX 103840274 103840296 -58759634 + (A)n Simple_repeat Simple_repeat 1 22 0 1001 204 0 14 chrX 103840687 103840898 -58759032 - MER3 DNA MER1_type -1 208 1 7345 24 0 0 chrX 103841025 103841900 -58758030 - L1PA2 LINE L1 -853 5293 4419 7523 17 0 0 chrX 103841900 103842766 -58757164 + L1PA2 LINE L1 5287 6155 0 357 339 0 0 chrX 103844559 103844736 -58755194 + (ATG)n Simple_repeat Simple_repeat 3 179 0 315 0 0 0 chrX 103845163 103845198 -58754732 + (TA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chrX 103846566 103846588 -58753342 + AT_rich Low_complexity Low_complexity 1 22 0 14343 203 26 33 chrX 103846588 103853073 -58746857 - L1MA5 LINE L1 -8 6934 4 2779 165 60 14 chrX 103853104 103853673 -58746257 - L1MB4 LINE L1 0 6180 5586 397 316 85 112 chrX 103853969 103854345 -58745585 + L2 LINE L2 2907 3272 0 474 18 0 0 chrX 103854434 103854489 -58745441 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 532 317 62 17 chrX 103855043 103855283 -58744647 + MIR SINE MIR 4 254 -8 754 258 12 0 chrX 103856080 103856247 -58743683 - AluJb SINE Alu -10 302 134 1535 99 22 14 chrX 103856834 103857056 -58742874 + AluSg SINE Alu 51 274 -36 201 47 70 0 chrX 103857060 103857103 -58742827 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 51 0 0 chrX 103858159 103858198 -58741732 + AT_rich Low_complexity Low_complexity 1 39 0 2238 118 18 12 chrX 103860025 103860363 -58739567 - THE1C LTR MaLR 0 375 36 289 122 0 0 chrX 103861419 103861460 -58738470 - 5S rRNA rRNA -80 41 1 405 39 0 0 chrX 103862813 103862864 -58737066 + (GA)n Simple_repeat Simple_repeat 2 52 0 3532 195 74 43 chrX 103863017 103863896 -58736034 - L1MB8 LINE L1 -6 6172 5321 2150 110 0 20 chrX 103863896 103864196 -58735734 - AluSx SINE Alu -18 294 1 3532 195 74 43 chrX 103864196 103864986 -58734944 - L1MB8 LINE L1 -857 5321 4464 1154 142 16 32 chrX 103865439 103865663 -58734267 - AluJo SINE Alu 0 320 100 460 335 43 22 chrX 103866356 103866541 -58733389 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chrX 103867970 103867991 -58731939 + AT_rich Low_complexity Low_complexity 1 21 0 235 342 25 42 chrX 103868012 103868132 -58731798 + Charlie8 DNA MER1_type 140 257 -2160 2672 20 0 0 chrX 103868442 103868743 -58731187 + AluYa5 SINE Alu 10 310 -1 459 0 0 0 chrX 103871799 103871850 -58728080 + (TG)n Simple_repeat Simple_repeat 1 51 0 246 32 0 0 chrX 103872089 103872120 -58727810 + (GA)n Simple_repeat Simple_repeat 2 32 0 296 305 0 41 chrX 103875258 103875380 -58724550 + MIR SINE MIR 39 154 -66 45 19 0 0 chrX 103875772 103875824 -58724106 + AT_rich Low_complexity Low_complexity 1 52 0 618 232 37 0 chrX 103876134 103876298 -58723632 + L1MA8 LINE L1 6115 6284 -7 23 54 0 0 chrX 103876298 103876335 -58723595 + AT_rich Low_complexity Low_complexity 1 37 0 41663 45 20 3 chrX 103880958 103887009 -58712921 + L1PA4 LINE L1 7 6153 -2 263 0 81 0 chrX 103887883 103887920 -58712010 + T-rich Low_complexity Low_complexity 3 42 0 347 264 0 120 chrX 103888989 103889156 -58710774 + L2 LINE L2 466 612 -2702 1301 180 12 126 chrX 103889159 103889564 -58710366 - MLT1A1 LTR MaLR -3 362 4 515 253 72 78 chrX 103889568 103889904 -58710026 - LTR35 LTR ERV1 0 677 351 2341 92 3 0 chrX 103890456 103890759 -58709171 - AluSq SINE Alu -9 304 1 4818 230 27 56 chrX 103890826 103891877 -58708053 - MLT1A1-int LTR MaLR -26 1709 698 5923 101 36 1 chrX 103891877 103893482 -58706448 + L1PA11 LINE L1 4537 6173 -1 4818 230 27 56 chrX 103893482 103893683 -58706247 - MLT1A1-int LTR MaLR -1037 698 493 3430 225 81 45 chrX 103893702 103894810 -58705120 - L1MDb LINE L1 -4993 1416 317 463 295 30 12 chrX 103895019 103895185 -58704745 + LTR16C LTR ERVL 322 490 -1 760 285 116 22 chrX 103895186 103895642 -58704288 + L1MC/D LINE L1 5307 5805 -2003 403 283 0 33 chrX 103896069 103896221 -58703709 - L1ME3 LINE L1 -72 6090 5944 577 156 18 9 chrX 103897377 103897486 -58702444 + MER20 DNA MER1_type 16 125 -94 198 245 21 11 chrX 103897535 103897629 -58702301 + GA-rich Low_complexity Low_complexity 2 96 0 6060 100 8 12 chrX 103897735 103899136 -58700794 - L1PA13 LINE L1 -4 6810 5409 3694 97 52 9 chrX 103899136 103899692 -58700238 + LTR19B LTR ERV1 1 580 0 6060 100 8 12 chrX 103899692 103899978 -58699952 - L1PA13 LINE L1 -1405 5409 5123 11161 195 45 13 chrX 103899996 103903252 -58696678 - L1PA13 LINE L1 -2228 4569 1140 192 77 0 0 chrX 103903252 103903278 -58696652 + (CAG)n Simple_repeat Simple_repeat 1 26 0 11161 195 45 13 chrX 103903278 103904455 -58695475 - L1PA13 LINE L1 -5657 1140 1 594 292 50 54 chrX 103904580 103904794 -58695136 - MIR SINE MIR -13 249 35 303 104 15 45 chrX 103904794 103904861 -58695069 - L1MC2 LINE L1 -1 6343 6279 594 292 50 54 chrX 103904861 103904886 -58695044 - MIR SINE MIR -227 35 11 186 133 0 0 chrX 103904923 103904953 -58694977 + (CA)n Simple_repeat Simple_repeat 2 31 0 1293 180 33 117 chrX 103905052 103905446 -58694484 - MLT1A1 LTR MaLR -3 362 2 903 265 81 45 chrX 103905480 103905902 -58694028 + MLT1J LTR MaLR 69 505 -6 2998 287 78 26 chrX 103907070 103907911 -58692019 - L2 LINE L2 -8 3305 2358 1659 167 17 21 chrX 103907911 103908199 -58691731 + AluJo SINE Alu 16 302 -10 2998 287 78 26 chrX 103908199 103908807 -58691123 - L2 LINE L2 -955 2358 1783 1576 246 67 23 chrX 103909041 103909356 -58690574 - L1MCb LINE L1 -2530 4034 3734 386 94 16 0 chrX 103909356 103909420 -58690510 + (CATTT)n Simple_repeat Simple_repeat 5 69 0 1576 246 67 23 chrX 103909420 103909808 -58690122 - L1MCb LINE L1 -2830 3734 3300 2021 130 34 0 chrX 103909863 103910155 -58689775 - AluSx SINE Alu -10 302 1 1123 220 82 8 chrX 103910158 103910643 -58689287 - L1MCb LINE L1 -3607 2957 2438 815 216 36 12 chrX 103910646 103910813 -58689117 - FRAM SINE Alu -10 166 1 1295 222 117 19 chrX 103910821 103911674 -58688256 - L1MCb LINE L1 -4141 2423 1389 558 137 0 11 chrX 103911680 103911775 -58688155 + MER4A LTR ERV1 5 98 -566 1692 139 6 24 chrX 103911775 103912127 -58687803 + MER4A LTR ERV1 261 664 0 1897 192 29 49 chrX 103912127 103912738 -58687192 - L1MCb LINE L1 -4864 1181 786 1272 244 35 43 chrX 103912748 103913323 -58686607 - L1M4 LINE L1 -1424 4722 4153 201 147 0 0 chrX 103913323 103913357 -58686573 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 274 198 0 25 chrX 103913357 103913438 -58686492 - L1M4 LINE L1 -1951 4195 4117 246 32 0 0 chrX 103913439 103913470 -58686460 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5207 3 0 0 chrX 103913470 103914043 -58685887 - L1PA2 LINE L1 -12 6143 5571 2711 13 0 0 chrX 103914045 103914474 -58685456 + L1PA2 LINE L1 5154 5582 -573 588 276 6 0 chrX 103914471 103914634 -58685296 - L1MCb LINE L1 -5246 799 636 * 470 154 45 0 chrX 103914672 103914782 -58685148 - L1MA7 LINE L1 0 6291 6177 1922 176 30 0 chrX 103914797 103915190 -58684740 - L1MA7 LINE L1 -239 6052 5648 1637 145 31 23 chrX 103915212 103915564 -58684366 + L1M2 LINE L1 5254 5608 -683 924 214 148 26 chrX 103915564 103915867 -58684063 - L1MCb LINE L1 -5398 647 308 1541 179 12 26 chrX 103915952 103916001 -58683929 - L1MB2 LINE L1 -2 6169 6121 1944 131 0 14 chrX 103916001 103916284 -58683646 - AluSx SINE Alu -13 299 21 1541 179 12 26 chrX 103916284 103916574 -58683356 - L1MB2 LINE L1 -50 6121 5835 6577 140 27 1 chrX 103916574 103918674 -58681256 + L1PA7 LINE L1 3811 6153 -1 5522 125 19 18 chrX 103918694 103919031 -58680899 + L1PA15 LINE L1 4992 5327 -838 2408 102 0 6 chrX 103919031 103919345 -58680585 + AluSx SINE Alu 1 312 0 276 30 0 0 chrX 103919345 103919378 -58680552 + (TA)n Simple_repeat Simple_repeat 2 34 0 5522 125 19 18 chrX 103919378 103920209 -58679721 + L1PA15 LINE L1 5326 6161 -4 3071 269 58 39 chrX 103920218 103920707 -58679223 - L2 LINE L2 -227 3086 2608 775 96 112 0 chrX 103920707 103920832 -58679098 - MER85 DNA T2_type 0 139 1 3071 269 58 39 chrX 103920832 103921476 -58678454 - L2 LINE L2 -705 2608 1934 404 191 21 0 chrX 103921476 103921570 -58678360 + L1ME2 LINE L1 5774 5869 -295 1413 201 36 10 chrX 103921590 103921899 -58678031 - LTR53 LTR ERVL -14 505 189 21781 44 0 1 chrX 103922063 103924760 -58675170 + HERV17 LTR ERV1 3326 6019 -2607 261 103 0 0 chrX 103924753 103924792 -58675138 + HERV17 LTR ERV1 7510 7548 -1078 * 2239 61 0 3 chrX 103924782 103925075 -58674855 + HERV17 LTR ERV1 8335 8626 0 2514 41 25 0 chrX 103925075 103925393 -58674537 + LTR17 LTR ERV1 1 326 -454 675 230 57 42 chrX 103925420 103925685 -58674245 + L1ME2 LINE L1 5880 6148 -16 2059 274 111 15 chrX 103925756 103926505 -58673425 - L2 LINE L2 -1483 1831 1011 56 0 0 0 chrX 103926816 103926872 -58673058 + AT_rich Low_complexity Low_complexity 1 56 0 312 250 0 38 chrX 103927762 103927842 -58672088 - MIR SINE MIR -86 176 100 383 272 132 9 chrX 103928957 103929071 -58670859 - MIR SINE MIR -112 150 23 520 222 139 26 chrX 103929481 103929675 -58670255 + L2 LINE L2 3098 3313 0 3142 94 9 13 chrX 103929887 103930342 -58669588 + L1PA10 LINE L1 5712 6164 -4 314 360 8 0 chrX 103930446 103930571 -58669359 + MIR SINE MIR 15 140 -122 402 261 126 74 chrX 103930586 103930610 -58669320 - MLT1J2 LTR MaLR -4 442 421 1633 173 23 33 chrX 103930610 103930917 -58669013 - AluJo SINE Alu -8 304 1 402 261 126 74 chrX 103930917 103931263 -58668667 - MLT1J2 LTR MaLR -25 421 49 8217 203 114 16 chrX 103932187 103932915 -58667015 - L1M2 LINE L1 -4721 2128 1473 2493 97 44 8 chrX 103932915 103933277 -58666653 + THE1C LTR MaLR 1 375 0 10034 116 40 13 chrX 103933277 103934816 -58665114 + THE1C-int LTR MaLR 1 1580 0 2625 81 30 16 chrX 103934816 103935186 -58664744 + THE1C LTR MaLR 1 375 0 8217 203 114 16 chrX 103935186 103936390 -58663540 - L1M2 LINE L1 -5375 1474 3 333 0 0 0 chrX 103936414 103936451 -58663479 + (TG)n Simple_repeat Simple_repeat 2 38 0 1168 229 60 5 chrX 103936463 103936830 -58663100 - L1M4 LINE L1 -1908 4736 4350 613 209 0 18 chrX 103936820 103936983 -58662947 - L1M4 LINE L1 -3125 3519 3360 * 275 173 0 0 chrX 103937235 103937287 -58662643 + MLT2E LTR ERVL 558 609 -19 2448 250 56 17 chrX 103937783 103939865 -58660065 - L1M4 LINE L1 -3303 3341 1084 306 148 0 0 chrX 103939867 103939921 -58660009 + (TA)n Simple_repeat Simple_repeat 2 55 0 338 275 0 22 chrX 103939922 103940013 -58659917 - L1MC4 LINE L1 -1340 6702 6614 495 194 0 0 chrX 103940020 103940128 -58659802 + (TA)n Simple_repeat Simple_repeat 1 108 0 2585 267 63 23 chrX 103940148 103941132 -58658798 - L1M4 LINE L1 -5510 1032 10 1599 194 31 41 chrX 103941242 103941633 -58658297 + MLT1B LTR MaLR 4 390 0 345 327 20 26 chrX 103941995 103942148 -58657782 - MLT1J2 LTR MaLR 0 450 299 534 225 46 84 chrX 103942309 103942515 -58657415 - ORSL DNA AcHobo 0 275 81 2312 97 0 0 chrX 103942515 103942803 -58657127 + AluSx SINE Alu 1 288 -24 534 225 46 84 chrX 103942803 103942881 -58657049 - ORSL DNA AcHobo -194 81 2 1834 197 98 19 chrX 103942918 103943385 -58656545 - MLT1D LTR MaLR -1 504 1 362 219 14 0 chrX 103943518 103943591 -58656339 + MIR SINE MIR 159 232 -30 1059 194 237 3 chrX 103945269 103945512 -58654418 - MLT2C1 LTR ERVL -48 349 30 183 42 0 0 chrX 103945512 103945536 -58654394 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1059 194 237 3 chrX 103945536 103945575 -58654355 - MLT2C1 LTR ERVL -367 30 1 506 204 11 0 chrX 103945983 103946076 -58653854 - MER5B DNA MER1_type -2 176 83 2340 112 0 0 chrX 103946092 103946397 -58653533 - AluSx SINE Alu -7 305 1 24 20 0 60 chrX 103946919 103946969 -58652961 + AT_rich Low_complexity Low_complexity 1 47 0 378 273 17 58 chrX 103947019 103947187 -58652743 - L1MC/D LINE L1 -367 5803 5653 192 185 56 56 chrX 103947191 103947245 -58652685 + MER5B DNA MER1_type 1 54 -124 1689 238 96 42 chrX 103947968 103948290 -58651640 + L1ME3A LINE L1 5587 5954 -216 2181 68 0 34 chrX 103948290 103948622 -58651308 - AluY SINE Alu 0 322 1 1689 238 96 42 chrX 103948622 103948852 -58651078 + L1ME3A LINE L1 5954 6170 0 371 307 66 19 chrX 103948951 103949163 -58650767 - L1MC/D LINE L1 -751 5395 5174 272 242 32 0 chrX 103949264 103949359 -58650571 - L1MC/D LINE L1 -1106 5040 4943 809 164 263 0 chrX 103949429 103949600 -58650330 - MER47A DNA MER2_type -149 217 2 790 361 42 39 chrX 103949613 103950033 -58649897 + ERVL LTR ERVL 4611 5035 -729 1467 212 145 21 chrX 103950033 103950406 -58649524 - LTR52 LTR ERVL -2 419 1 790 361 42 39 chrX 103950406 103950775 -58649155 + ERVL LTR ERVL 5035 5402 -362 1803 272 27 22 chrX 103950870 103951318 -58648612 + LTR16A LTR ERVL 1 450 0 765 204 64 143 chrX 103951367 103951681 -58648249 + MLT1B LTR MaLR 1 289 -101 2662 152 39 4 chrX 103951681 103952143 -58647787 - L1MB1 LINE L1 -164 6025 5548 485 147 0 59 chrX 103952137 103952239 -58647691 - L1M3d LINE L1 -5790 101 6 * 431 200 67 0 chrX 103952247 103952367 -58647563 + Charlie4 DNA MER1_type 1806 1933 -28 416 239 0 149 chrX 103952482 103952630 -58647300 - MLT1J2 LTR MaLR -301 149 23 559 259 46 42 chrX 103952734 103952973 -58646957 - L1MC/D LINE L1 -1943 4203 3964 212 379 32 11 chrX 103953216 103953311 -58646619 + MIR3 SINE MIR 3 99 -109 666 269 14 39 chrX 103953320 103953528 -58646402 - MIR SINE MIR -3 259 57 350 327 0 0 chrX 103955387 103955491 -58644439 + MIR3 SINE MIR 99 202 -6 180 286 36 18 chrX 103956096 103956152 -58643778 + MIR SINE MIR 87 143 -65 480 247 63 32 chrX 103956757 103956915 -58643015 - MIR SINE MIR -97 165 3 209 350 0 12 chrX 103957148 103957228 -58642702 + MIR SINE MIR 19 97 -165 366 328 33 74 chrX 103959318 103959803 -58640127 + L2 LINE L2 2241 2705 -609 249 328 174 26 chrX 103960215 103960480 -58639450 + L3 LINE CR1 1264 1567 -10 294 95 0 0 chrX 103960730 103960772 -58639158 + (TAG)n Simple_repeat Simple_repeat 1 42 0 516 281 0 43 chrX 103961573 103961737 -58638193 + MIR SINE MIR 78 234 -28 2529 256 58 13 chrX 103963066 103963742 -58636188 + ERVL-F LTR ERVL 3827 4532 -1232 198 0 0 0 chrX 103964337 103964359 -58635571 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 245 258 152 0 chrX 103965530 103965596 -58634334 + Charlie8 DNA MER1_type 3 78 -2339 2004 94 4 22 chrX 103965660 103965935 -58633995 + AluSx SINE Alu 1 270 -42 200 250 50 17 chrX 103966238 103966298 -58633632 - MIR SINE MIR -195 67 6 404 194 97 11 chrX 103966479 103966572 -58633358 + L2 LINE L2 3166 3266 -6 322 170 43 32 chrX 103967324 103967418 -58632512 + MER103 DNA DNA 60 154 -12 5679 184 35 4 chrX 104017723 104018903 -58581027 - L1 LINE L1 -231 7319 5542 * 18371 143 74 15 chrX 104018899 104020338 -58579592 - L1 LINE L1 -4259 3306 1954 16177 34 12 0 chrX 104020338 104022918 -58577012 + L1PA5 LINE L1 3547 6141 -13 261 0 0 0 chrX 104022924 104022953 -58576977 + (TA)n Simple_repeat Simple_repeat 2 30 0 18371 143 74 15 chrX 104022953 104024617 -58575313 - L1 LINE L1 -5615 1950 11 3098 224 50 55 chrX 104024620 104025534 -58574396 + ERVL-F LTR ERVL 1987 2896 -141 3733 189 19 29 chrX 104025742 104026436 -58573494 + MER76 LTR ERV 2 688 0 3228 259 58 6 chrX 104026469 104027720 -58572210 + L1MEc LINE L1 2132 3406 -2809 458 230 0 101 chrX 104028255 104028403 -58571527 + ERVL-F LTR ERVL 4920 5052 -478 456 314 107 27 chrX 104029071 104029370 -58570560 + ERVL-F LTR ERVL 4940 5262 -502 584 325 10 0 chrX 104029600 104029794 -58570136 - ERVL LTR ERVL -2010 3754 3559 19117 192 21 14 chrX 104029861 104032311 -58567619 - L1PA13 LINE L1 -1 6813 4382 183 42 0 0 chrX 104032311 104032335 -58567595 + (TTG)n Simple_repeat Simple_repeat 3 26 0 19117 192 21 14 chrX 104032335 104033747 -58566183 - L1PA13 LINE L1 -2432 4382 2982 2139 125 120 48 chrX 104033747 104033925 -58566005 + MSTA LTR MaLR 1 165 -263 2316 89 0 10 chrX 104033925 104034239 -58565691 + AluY SINE Alu 1 311 0 2139 125 120 48 chrX 104034239 104034459 -58565471 + MSTA LTR MaLR 165 428 0 19117 192 21 14 chrX 104034459 104037366 -58562564 - L1PA13 LINE L1 -3832 2982 2 2646 248 39 19 chrX 104037385 104038026 -58561904 - MER21B LTR ERV1 -112 751 98 642 268 30 43 chrX 104038132 104038239 -58561691 - ERVL LTR ERVL -2207 3557 3450 1492 134 60 0 chrX 104038239 104038456 -58561474 - MER30 DNA MER1_type 0 230 1 642 268 30 43 chrX 104038456 104038583 -58561347 - ERVL LTR ERVL -2314 3450 3326 * 6034 256 40 22 chrX 104038578 104040216 -58559714 + ERVL-F LTR ERVL 3769 5435 -329 1681 214 11 25 chrX 104040380 104040736 -58559194 - MLT1A1 LTR MaLR -14 351 1 602 303 0 0 chrX 104040737 104040899 -58559031 + ERVL-F LTR ERVL 5594 5755 -9 1241 267 71 57 chrX 104040900 104041063 -58558867 + MLT2F LTR ERVL 1 160 -468 2322 107 62 39 chrX 104041063 104041419 -58558511 + THE1B LTR MaLR 1 364 0 12583 91 3 1 chrX 104041419 104042994 -58556936 + THE1B-int LTR MaLR 1 1578 -2 2171 144 51 20 chrX 104042996 104043349 -58556581 + THE1B LTR MaLR 1 364 0 1241 267 71 57 chrX 104043349 104043785 -58556145 + MLT2F LTR ERVL 160 578 -50 1192 232 18 96 chrX 104043795 104043943 -58555987 - MLT1A1 LTR MaLR 0 365 207 2139 160 97 37 chrX 104043943 104044405 -58555525 + LTR2B LTR ERV1 1 490 0 1192 232 18 96 chrX 104044405 104044652 -58555278 - MLT1A1 LTR MaLR -158 207 1 185 268 146 37 chrX 104044861 104044943 -58554987 - L3 LINE CR1 -1043 534 444 2212 121 0 3 chrX 104045665 104045963 -58553967 - AluSx SINE Alu -15 297 1 2352 88 10 0 chrX 104046023 104046330 -58553600 - AluSq SINE Alu -3 310 1 819 213 18 6 chrX 104047753 104047917 -58552013 + MER5A DNA MER1_type 24 189 0 224 292 58 42 chrX 104048784 104048904 -58551026 + L2 LINE L2 3180 3301 -12 297 331 54 34 chrX 104049129 104049277 -58550653 - MLT1-int LTR MaLR -522 849 699 1979 96 52 4 chrX 104049497 104049795 -58550135 - AluSq SINE Alu 0 311 1 532 247 45 34 chrX 104049860 104049950 -58549980 + MER115 DNA AcHobo 502 590 -103 3341 123 8 6 chrX 104049950 104050460 -58549470 - MER9 LTR ERVK 0 511 1 532 247 45 34 chrX 104050460 104050547 -58549383 + MER115 DNA AcHobo 590 681 -12 3785 235 78 31 chrX 104051396 104052469 -58547461 - ERVL LTR ERVL -2502 3262 2139 968 298 48 7 chrX 104052504 104052813 -58547117 - ERVL LTR ERVL -3723 2041 1720 2648 118 59 14 chrX 104052836 104053404 -58546526 - MER4E LTR ERV1 0 766 1 14604 102 51 18 chrX 104053404 104055637 -58544293 - MER4E-int LTR ERV1 0 6758 4452 4412 118 38 3 chrX 104055636 104056273 -58543657 - MER4E-int LTR ERV1 -2670 4088 3430 * 8654 109 67 24 chrX 104056272 104058351 -58541579 - MER4E-int LTR ERV1 -3659 3099 1418 402 21 0 0 chrX 104058365 104058412 -58541518 + (CA)n Simple_repeat Simple_repeat 2 48 0 5240 129 82 11 chrX 104058425 104059306 -58540624 - MER4E-int LTR ERV1 -5608 1150 208 1001 96 50 56 chrX 104059306 104059749 -58540181 - MER4B LTR ERV1 0 610 1 1168 170 5 47 chrX 104059753 104059965 -58539965 - MER4E-int LTR ERV1 -6554 204 2 2215 92 0 0 chrX 104059973 104060267 -58539663 - MER4E LTR ERV1 -9 757 464 1582 108 113 0 chrX 104060268 104060499 -58539431 + AluSx SINE Alu 1 257 -55 6939 52 5 1 chrX 104061081 104062713 -58537217 - L1PA6 LINE L1 -4 6150 4512 1982 178 0 3 chrX 104062726 104063058 -58536872 - L1P3 LINE L1 -6130 331 1 1229 84 6 0 chrX 104063067 104063234 -58536696 - MLT2A1 LTR ERVL -83 361 194 3714 184 53 15 chrX 104063390 104064167 -58535763 - L1MB5 LINE L1 0 6174 5369 689 262 53 4 chrX 104064259 104064522 -58535408 + L1MDb LINE L1 844 1119 -5290 1113 257 63 6 chrX 104064524 104064890 -58535040 + L1ME3 LINE L1 5776 6162 0 907 258 55 72 chrX 104065334 104065791 -58534139 + L1MD1 LINE L1 64 512 -6028 229 279 93 0 chrX 104066003 104066089 -58533841 + L1MD1 LINE L1 547 640 -5900 242 155 52 0 chrX 104066263 104066321 -58533609 + L1MD1 LINE L1 982 1042 -5501 * 6689 126 9 42 chrX 104066313 104067754 -58532176 + L1MA2 LINE L1 4923 6304 0 1974 239 73 29 chrX 104067751 104068171 -58531759 + L1MD1 LINE L1 998 1466 -5074 * 2198 99 3 0 chrX 104068171 104068482 -58531448 + AluSx SINE Alu 1 312 0 1974 239 73 29 chrX 104068482 104068785 -58531145 + L1MD1 LINE L1 1466 1754 -4786 2576 242 60 11 chrX 104068786 104069001 -58530929 + L1MD1 LINE L1 1780 1983 -4666 414 101 0 43 chrX 104069001 104069070 -58530860 + L1PA16 LINE L1 6089 6154 -12 2576 242 60 11 chrX 104069070 104069754 -58530176 + L1MD1 LINE L1 1983 2756 -3893 6728 22 0 0 chrX 104069756 104070530 -58529400 - L1PA3 LINE L1 -1303 4843 4067 7708 23 0 0 chrX 104070530 104071844 -58528086 + L1PA3 LINE L1 4841 6155 0 3399 233 38 16 chrX 104071870 104072283 -58527647 + L1MD1 LINE L1 2736 3139 -3401 1401 201 24 7 chrX 104072283 104072576 -58527354 + AluJo SINE Alu 1 298 -14 3399 233 38 16 chrX 104072576 104073280 -58526650 + L1MD1 LINE L1 3139 3877 -2663 18988 181 29 24 chrX 104073577 104073847 -58526083 + L1PA13 LINE L1 2 269 -6545 2317 113 0 0 chrX 104073847 104074156 -58525774 + AluSx SINE Alu 1 309 -3 1197 39 22 11 chrX 104074160 104074338 -58525592 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 18988 181 29 24 chrX 104074338 104074923 -58525007 + L1PA13 LINE L1 271 852 -5962 258 32 0 0 chrX 104074923 104074954 -58524976 + (TG)n Simple_repeat Simple_repeat 1 31 0 18988 181 29 24 chrX 104074954 104080299 -58519631 + L1PA13 LINE L1 852 6171 -643 2262 124 30 25 chrX 104080299 104080661 -58519269 + THE1B LTR MaLR 1 364 0 18988 181 29 24 chrX 104080661 104081085 -58518845 + L1PA13 LINE L1 6171 6685 -129 4453 119 65 46 chrX 104081085 104081864 -58518066 + LTR25 LTR ERV1 1 794 0 18988 181 29 24 chrX 104081864 104081991 -58517939 + L1PA13 LINE L1 6685 6810 -4 448 313 39 39 chrX 104082029 104082262 -58517668 - MIR SINE MIR -28 234 2 5525 125 18 26 chrX 104082363 104083262 -58516668 + L1PA13 LINE L1 5272 6163 0 5217 221 73 24 chrX 104083326 104085939 -58513991 + L1MD1 LINE L1 3904 6636 0 1592 257 48 93 chrX 104085918 104086382 -58513548 + L1ME1 LINE L1 7 421 -5975 * 1704 180 30 0 chrX 104086382 104086682 -58513248 + AluJb SINE Alu 3 311 -1 1592 257 48 93 chrX 104086682 104087026 -58512904 + L1ME1 LINE L1 421 779 -5617 1284 203 21 0 chrX 104087026 104087262 -58512668 + MSTC LTR MaLR 186 426 -2 523 240 28 17 chrX 104087306 104087485 -58512445 + L1ME1 LINE L1 1000 1180 -5216 1421 261 82 77 chrX 104087521 104088332 -58511598 + L1ME1 LINE L1 1409 2228 -4168 7673 107 0 0 chrX 104088332 104090269 -58509661 + L1PA8 LINE L1 4238 6172 0 1421 261 82 77 chrX 104090269 104090518 -58509412 + L1ME1 LINE L1 2228 2474 -3922 * 2868 229 85 11 chrX 104090514 104092055 -58507875 + L1ME1 LINE L1 4576 6403 0 1451 186 13 80 chrX 104092082 104092470 -58507460 - MLT1A1 LTR MaLR 0 365 4 23 54 0 0 chrX 104092864 104092901 -58507029 + AT_rich Low_complexity Low_complexity 1 37 0 359 299 60 15 chrX 104093177 104093311 -58506619 + LTR33A LTR ERVL 60 199 -324 6377 120 90 9 chrX 104094113 104095251 -58504679 + Tigger3b DNA MER2_type 2 1231 0 396 206 114 2 chrX 104095529 104095654 -58504276 - MIR SINE MIR -65 143 32 2364 83 0 0 chrX 104096421 104096721 -58503209 - AluSg SINE Alu -10 300 1 300 154 0 0 chrX 104097982 104098034 -58501896 + GA-rich Low_complexity Low_complexity 3 54 0 2226 30 0 0 chrX 104098495 104098760 -58501170 + L1PA4 LINE L1 5888 6152 -3 887 134 0 0 chrX 104099340 104099467 -58500463 + FLAM_C SINE Alu 1 127 -16 1739 138 48 0 chrX 104099828 104100118 -58499812 + AluSx SINE Alu 2 304 0 852 103 0 8 chrX 104100629 104100755 -58499175 + L1PA10 LINE L1 6036 6160 -8 430 298 0 8 chrX 104101378 104101509 -58498421 - L1ME LINE L1 -556 5606 5477 27 0 0 0 chrX 104101543 104101570 -58498360 + AT_rich Low_complexity Low_complexity 1 27 0 6108 19 0 0 chrX 104101570 104102273 -58497657 - L1PA2 LINE L1 0 6155 5453 930 175 7 116 chrX 104102630 104102922 -58497008 + L1 LINE L1 5130 5389 -757 1246 121 39 0 chrX 104102922 104103128 -58496802 + L1MA9 LINE L1 6080 6293 -19 359 272 35 17 chrX 104103881 104104054 -58495876 + L1MC4a LINE L1 4476 4651 -1495 294 258 52 32 chrX 104105789 104105944 -58493986 + L1MC4a LINE L1 5776 5933 -1875 1236 104 16 112 chrX 104107627 104107912 -58492018 - Tigger3b DNA MER2_type 0 1241 1020 984 116 58 11 chrX 104107922 104108112 -58491818 - Tigger3b DNA MER2_type -806 425 227 * 5504 130 42 27 chrX 104108102 104109100 -58490830 - Tigger3b DNA MER2_type -217 1014 2 24 32 0 0 chrX 104109806 104109837 -58490093 + AT_rich Low_complexity Low_complexity 1 31 0 2191 106 23 3 chrX 104110837 104111139 -58488791 + AluSx SINE Alu 1 308 -4 2554 49 0 0 chrX 104111305 104111612 -58488318 - AluY SINE Alu -4 307 1 190 222 33 100 chrX 104111713 104111803 -58488127 + MIR SINE MIR 11 94 -168 361 265 82 20 chrX 104111811 104111958 -58487972 - L1ME LINE L1 -596 5525 5370 2065 124 0 0 chrX 104112167 104112450 -58487480 - AluSx SINE Alu -13 299 17 231 314 29 25 chrX 104112859 104113101 -58486829 + L1MC4a LINE L1 4457 4699 -1447 275 234 153 9 chrX 104114373 104114484 -58485446 + L1MC4a LINE L1 5773 5899 -1909 211 309 53 21 chrX 104115723 104115817 -58484113 + MIR SINE MIR 18 114 -94 772 90 0 0 chrX 104117165 104117265 -58482665 - LTR12 LTR ERV1 0 714 615 374 201 42 0 chrX 104117267 104117373 -58482557 - LTR30 LTR ERV1 -79 677 544 1662 92 35 4 chrX 104117373 104117631 -58482299 - LTR12 LTR ERV1 -421 2017 52 246 250 0 0 chrX 104117631 104117683 -58482247 - LTR30 LTR ERV1 -670 52 1 8620 87 15 10 chrX 104117683 104118873 -58481057 - HERV9 LTR ERV1 0 8399 7204 3462 88 0 0 chrX 104118871 104119327 -58480603 - HERV9 LTR ERV1 -2024 6375 5920 * 7217 87 5 5 chrX 104119320 104120289 -58479641 - HERV9 LTR ERV1 -5060 3339 2371 12793 205 24 17 chrX 104220289 104220948 -58378982 - L1PA13 LINE L1 -3225 3572 2919 2139 125 120 48 chrX 104220948 104221126 -58378804 + MSTA LTR MaLR 1 165 -263 2316 89 0 10 chrX 104221126 104221440 -58378490 + AluY SINE Alu 1 311 0 2139 125 120 48 chrX 104221440 104221660 -58378270 + MSTA LTR MaLR 165 428 0 12793 205 24 17 chrX 104221660 104224568 -58375362 - L1PA13 LINE L1 -3878 2919 2 2646 248 39 19 chrX 104224587 104225228 -58374702 - MER21B LTR ERV1 -112 751 98 642 268 30 43 chrX 104225334 104225441 -58374489 - ERVL LTR ERVL -2207 3557 3450 1492 134 60 0 chrX 104225441 104225658 -58374272 - MER30 DNA MER1_type 0 230 1 642 268 30 43 chrX 104225658 104225785 -58374145 - ERVL LTR ERVL -2314 3450 3326 * 6064 257 40 21 chrX 104225780 104227417 -58372513 + ERVL-F LTR ERVL 3769 5435 -329 1681 214 11 25 chrX 104227581 104227937 -58371993 - MLT1A1 LTR MaLR -14 351 1 602 303 0 0 chrX 104227938 104228100 -58371830 + ERVL-F LTR ERVL 5594 5755 -9 1241 267 71 57 chrX 104228101 104228264 -58371666 + MLT2F LTR ERVL 1 160 -468 2322 107 62 39 chrX 104228264 104228620 -58371310 + THE1B LTR MaLR 1 364 0 12599 90 3 2 chrX 104228620 104230196 -58369734 + THE1B-int LTR MaLR 1 1578 -2 2171 144 51 20 chrX 104230198 104230551 -58369379 + THE1B LTR MaLR 1 364 0 1241 267 71 57 chrX 104230551 104230987 -58368943 + MLT2F LTR ERVL 160 578 -50 1192 232 18 96 chrX 104230997 104231145 -58368785 - MLT1A1 LTR MaLR 0 365 207 2144 160 97 37 chrX 104231145 104231607 -58368323 + LTR2B LTR ERV1 1 490 0 1192 232 18 96 chrX 104231607 104231854 -58368076 - MLT1A1 LTR MaLR -158 207 1 185 268 146 37 chrX 104232063 104232145 -58367785 - L3 LINE CR1 -1043 534 444 2212 121 0 3 chrX 104232867 104233165 -58366765 - AluSx SINE Alu -15 297 1 2352 88 10 0 chrX 104233225 104233532 -58366398 - AluSq SINE Alu -3 310 1 819 213 18 6 chrX 104234955 104235119 -58364811 + MER5A DNA MER1_type 24 189 0 215 292 58 42 chrX 104235986 104236106 -58363824 + L2 LINE L2 3180 3301 -12 301 331 54 34 chrX 104236331 104236479 -58363451 - MLT1-int LTR MaLR -522 849 699 1997 93 50 11 chrX 104236693 104236997 -58362933 - AluSq SINE Alu 0 313 1 551 230 51 39 chrX 104237062 104237152 -58362778 + MER115 DNA AcHobo 502 589 -104 3599 123 8 6 chrX 104237152 104237662 -58362268 - MER9 LTR ERVK 0 511 1 551 230 51 39 chrX 104237662 104237749 -58362181 + MER115 DNA AcHobo 589 681 -12 3861 236 78 31 chrX 104238598 104239671 -58360259 - ERVL LTR ERVL -2502 3262 2139 981 298 48 7 chrX 104239706 104240015 -58359915 - ERVL LTR ERVL -3723 2041 1720 2713 116 60 14 chrX 104240038 104240606 -58359324 - MER4E LTR ERV1 0 766 1 15023 101 58 11 chrX 104240606 104241043 -58358887 - MER4E-int LTR ERV1 0 6758 6343 188 67 33 0 chrX 104241043 104241073 -58358857 + (TA)n Simple_repeat Simple_repeat 1 31 0 15023 101 58 11 chrX 104241073 104242839 -58357091 - MER4E-int LTR ERV1 -415 6343 4452 4506 118 38 3 chrX 104242838 104243475 -58356455 - MER4E-int LTR ERV1 -2670 4088 3430 * 8967 110 67 23 chrX 104243474 104245549 -58354381 - MER4E-int LTR ERV1 -3659 3099 1418 366 23 0 0 chrX 104245563 104245606 -58354324 + (CA)n Simple_repeat Simple_repeat 2 44 0 3946 132 42 13 chrX 104245619 104246500 -58353430 - MER4E-int LTR ERV1 -5608 1150 208 1019 96 50 56 chrX 104246500 104246943 -58352987 - MER4B LTR ERV1 0 610 1 1180 170 5 47 chrX 104246947 104247159 -58352771 - MER4E-int LTR ERV1 -6554 204 2 2264 92 0 0 chrX 104247167 104247461 -58352469 - MER4E LTR ERV1 -9 757 464 1593 108 113 0 chrX 104247462 104247693 -58352237 + AluSx SINE Alu 1 257 -55 6939 52 5 1 chrX 104248275 104249907 -58350023 - L1PA6 LINE L1 -4 6150 4512 1982 178 0 3 chrX 104249920 104250252 -58349678 - L1P3 LINE L1 -6130 331 1 1229 84 6 0 chrX 104250261 104250428 -58349502 - MLT2A1 LTR ERVL -83 361 194 3714 184 53 15 chrX 104250584 104251361 -58348569 - L1MB5 LINE L1 0 6174 5369 689 262 53 4 chrX 104251453 104251716 -58348214 + L1MDb LINE L1 844 1119 -5290 1113 257 63 6 chrX 104251718 104252084 -58347846 + L1ME3 LINE L1 5776 6162 0 907 258 55 72 chrX 104252528 104252985 -58346945 + L1MD1 LINE L1 64 512 -6028 229 279 93 0 chrX 104253197 104253283 -58346647 + L1MD1 LINE L1 547 640 -5900 242 155 52 0 chrX 104253457 104253515 -58346415 + L1MD1 LINE L1 982 1042 -5501 * 6689 126 9 42 chrX 104253507 104254948 -58344982 + L1MA2 LINE L1 4923 6304 0 1974 239 73 29 chrX 104254945 104255365 -58344565 + L1MD1 LINE L1 998 1466 -5074 * 2198 99 3 0 chrX 104255365 104255676 -58344254 + AluSx SINE Alu 1 312 0 1974 239 73 29 chrX 104255676 104255979 -58343951 + L1MD1 LINE L1 1466 1754 -4786 2576 242 60 11 chrX 104255980 104256195 -58343735 + L1MD1 LINE L1 1780 1983 -4666 414 101 0 43 chrX 104256195 104256264 -58343666 + L1PA16 LINE L1 6089 6154 -12 2576 242 60 11 chrX 104256264 104256948 -58342982 + L1MD1 LINE L1 1983 2756 -3893 6721 22 0 0 chrX 104256950 104257724 -58342206 - L1PA3 LINE L1 -1303 4843 4067 7708 23 0 0 chrX 104257724 104259038 -58340892 + L1PA3 LINE L1 4841 6155 0 3399 233 38 16 chrX 104259064 104259477 -58340453 + L1MD1 LINE L1 2736 3139 -3401 1401 201 24 7 chrX 104259477 104259770 -58340160 + AluJo SINE Alu 1 298 -14 3399 233 38 16 chrX 104259770 104260474 -58339456 + L1MD1 LINE L1 3139 3877 -2663 19024 181 29 25 chrX 104260771 104261041 -58338889 + L1PA13 LINE L1 2 270 -6544 2317 113 0 0 chrX 104261041 104261350 -58338580 + AluSx SINE Alu 1 309 -3 19024 181 29 25 chrX 104261350 104261402 -58338528 + L1PA13 LINE L1 270 320 -6494 1225 39 11 17 chrX 104261402 104261581 -58338349 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 19024 181 29 25 chrX 104261581 104262125 -58337805 + L1PA13 LINE L1 320 861 -5953 258 32 0 0 chrX 104262125 104262156 -58337774 + (TG)n Simple_repeat Simple_repeat 1 31 0 19024 181 29 25 chrX 104262156 104267501 -58332429 + L1PA13 LINE L1 861 6185 -629 2262 124 30 25 chrX 104267501 104267863 -58332067 + THE1B LTR MaLR 1 364 0 19024 181 29 25 chrX 104267863 104268287 -58331643 + L1PA13 LINE L1 6185 6685 -129 4453 119 65 46 chrX 104268287 104269066 -58330864 + LTR25 LTR ERV1 1 794 0 19024 181 29 25 chrX 104269066 104269193 -58330737 + L1PA13 LINE L1 6685 6810 -4 448 313 39 39 chrX 104269231 104269464 -58330466 - MIR SINE MIR -28 234 2 5525 125 18 26 chrX 104269565 104270464 -58329466 + L1PA13 LINE L1 5272 6163 0 5217 221 73 24 chrX 104270528 104273141 -58326789 + L1MD1 LINE L1 3904 6636 0 1592 257 48 93 chrX 104273120 104273584 -58326346 + L1ME1 LINE L1 7 421 -5975 * 1704 180 30 0 chrX 104273584 104273884 -58326046 + AluJb SINE Alu 3 311 -1 1592 257 48 93 chrX 104273884 104274228 -58325702 + L1ME1 LINE L1 421 779 -5617 1284 203 21 0 chrX 104274228 104274464 -58325466 + MSTC LTR MaLR 186 426 -2 523 240 28 17 chrX 104274508 104274687 -58325243 + L1ME1 LINE L1 1000 1180 -5216 1421 261 82 77 chrX 104274723 104275534 -58324396 + L1ME1 LINE L1 1409 2228 -4168 7673 107 0 0 chrX 104275534 104277471 -58322459 + L1PA8 LINE L1 4238 6172 0 1421 261 82 77 chrX 104277471 104277720 -58322210 + L1ME1 LINE L1 2228 2474 -3922 * 2868 229 85 11 chrX 104277716 104279257 -58320673 + L1ME1 LINE L1 4576 6403 0 1437 186 16 80 chrX 104279284 104279671 -58320259 - MLT1A1 LTR MaLR 0 365 4 23 54 0 0 chrX 104280065 104280102 -58319828 + AT_rich Low_complexity Low_complexity 1 37 0 359 299 60 15 chrX 104280378 104280512 -58319418 + LTR33A LTR ERVL 60 199 -324 6377 120 90 9 chrX 104281314 104282452 -58317478 + Tigger3b DNA MER2_type 2 1231 0 396 206 114 2 chrX 104282730 104282855 -58317075 - MIR SINE MIR -65 143 32 2364 83 0 0 chrX 104283622 104283922 -58316008 - AluSg SINE Alu -10 300 1 300 154 0 0 chrX 104285183 104285235 -58314695 + GA-rich Low_complexity Low_complexity 3 54 0 2226 30 0 0 chrX 104285696 104285961 -58313969 + L1PA4 LINE L1 5888 6152 -3 887 134 0 0 chrX 104286541 104286668 -58313262 + FLAM_C SINE Alu 1 127 -16 1739 138 48 0 chrX 104287029 104287319 -58312611 + AluSx SINE Alu 2 304 0 852 103 0 8 chrX 104287830 104287956 -58311974 + L1PA10 LINE L1 6036 6160 -8 430 298 0 8 chrX 104288579 104288710 -58311220 - L1ME LINE L1 -556 5606 5477 27 0 0 0 chrX 104288744 104288771 -58311159 + AT_rich Low_complexity Low_complexity 1 27 0 5996 26 0 0 chrX 104288771 104289474 -58310456 - L1PA2 LINE L1 0 6155 5453 930 175 7 116 chrX 104289831 104290123 -58309807 + L1 LINE L1 5130 5389 -757 1246 121 39 0 chrX 104290123 104290329 -58309601 + L1MA9 LINE L1 6080 6293 -19 359 272 35 17 chrX 104291082 104291255 -58308675 + L1M4 LINE L1 4476 4651 -1495 1105 267 12 28 chrX 104292595 104292917 -58307013 + MER77 LTR ERV1 287 603 -2 224 207 0 73 chrX 104293069 104293151 -58306779 + GA-rich Low_complexity Low_complexity 3 78 0 261 0 0 0 chrX 104296427 104296456 -58303474 + (CA)n Simple_repeat Simple_repeat 2 30 0 774 254 9 47 chrX 104296472 104296704 -58303226 - MER58A DNA MER1_type -1 223 1 234 288 151 37 chrX 104297255 104297554 -58302376 + LTR50 LTR ERVL 216 548 -247 1911 261 23 50 chrX 104497694 104498349 -58101581 + L1ME1 LINE L1 5517 6153 -13 5155 264 69 11 chrX 104498364 104500493 -58099437 + L1MC/D LINE L1 2274 4524 -1622 2015 141 29 126 chrX 104500721 104500915 -58099015 + MSTB1 LTR MaLR 1 212 -220 935 52 0 0 chrX 104500915 104501031 -58098899 + L1PA3 LINE L1 6040 6155 0 2015 141 29 126 chrX 104501031 104501312 -58098618 + MSTB1 LTR MaLR 212 430 -2 1225 227 39 6 chrX 104501314 104501645 -58098285 + L1MC/D LINE L1 4653 4994 -1152 455 163 0 25 chrX 104501647 104501727 -58098203 + L1MC1 LINE L1 6239 6316 -17 601 251 82 21 chrX 104501767 104502010 -58097920 + L1MC/D LINE L1 4982 5239 -907 273 29 0 0 chrX 104502014 104502048 -58097882 + (CA)n Simple_repeat Simple_repeat 1 34 0 916 200 141 28 chrX 104502049 104502339 -58097591 + L1MC/D LINE L1 5285 5607 -2388 306 274 113 76 chrX 104502388 104502716 -58097214 - L1MEc LINE L1 -5039 1357 1018 2105 175 83 27 chrX 104503083 104503528 -58096402 - MLT2B1 LTR ERVL -50 470 1 3716 133 45 3 chrX 104503529 104504132 -58095798 - ERVL-B1 LTR ERVL -8 5756 5129 224 207 0 73 chrX 104505040 104505122 -58094808 + CT-rich Low_complexity Low_complexity 3 78 0 1168 283 22 24 chrX 104505274 104505645 -58094285 - MER77 LTR ERV1 -2 603 234 252 0 0 0 chrX 104505742 104505770 -58094160 + (A)n Simple_repeat Simple_repeat 1 28 0 394 234 13 97 chrX 104505783 104505937 -58093993 - MER77 LTR ERV1 -464 141 1 3900 254 49 93 chrX 104506783 104508445 -58091485 - MER77-int LTR ERV1 -56 4135 2547 312 167 0 133 chrX 104508524 104508614 -58091316 - MER77-int LTR ERV1 -1692 2499 2422 1287 241 40 88 chrX 104508642 104509143 -58090787 - MER77-int LTR ERV1 -1772 2419 1943 345 363 32 32 chrX 104508996 104509459 -58090471 - MER70-int LTR ERVL -2933 2090 1628 * 784 292 4 30 chrX 104509987 104510220 -58089710 - MER77-int LTR ERV1 -2281 1910 1684 3323 308 33 23 chrX 104510288 104511484 -58088446 - MER77-int LTR ERV1 -2966 1225 18 1807 238 101 39 chrX 104511484 104512065 -58087865 - MER77 LTR ERV1 -2 603 6 1352 233 40 49 chrX 104513836 104514282 -58085648 - L1MB8 LINE L1 -2 6176 5735 366 221 25 25 chrX 104514277 104514399 -58085531 - L1MB8 LINE L1 -1714 4432 4311 * 7659 145 10 13 chrX 104514409 104516522 -58083408 - L1MA1 LINE L1 -164 6138 4028 8294 123 25 8 chrX 104516522 104517783 -58082147 + HSMAR1 DNA Mariner 3 1285 -2 7659 145 10 13 chrX 104517783 104517881 -58082049 - L1MA1 LINE L1 -2274 4028 3931 542 192 35 64 chrX 104517884 104517940 -58081990 - L1MB8 LINE L1 -1826 4320 4264 1411 183 31 28 chrX 104517940 104518229 -58081701 - AluJb SINE Alu -20 292 3 542 192 35 64 chrX 104518229 104518344 -58081586 - L1MB8 LINE L1 -1882 4264 4154 1595 122 39 56 chrX 104518346 104518706 -58081224 - L1MA8 LINE L1 -1 6290 5937 467 214 0 31 chrX 104518754 104518852 -58081078 + FRAM SINE Alu 55 149 -27 667 67 91 3 chrX 104518869 104519242 -58080688 + (TA)n Simple_repeat Simple_repeat 1 406 0 437 221 55 0 chrX 104519246 104519373 -58080557 - L1MA8 LINE L1 -2575 5420 5287 1739 60 0 0 chrX 104519373 104519589 -58080341 + THE1A LTR MaLR 1 216 -139 232 154 0 19 chrX 104519590 104519642 -58080288 - L1ME LINE L1 -5128 942 892 372 110 31 90 chrX 104519642 104520192 -58079738 + (TA)n Simple_repeat Simple_repeat 1 517 0 481 47 5 98 chrX 104520204 104520397 -58079533 + (TA)n Simple_repeat Simple_repeat 2 176 0 586 86 27 75 chrX 104520406 104520593 -58079337 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 401 96 32 90 chrX 104520594 104520782 -58079148 + (TA)n Simple_repeat Simple_repeat 1 177 0 230 74 26 111 chrX 104520880 104521069 -58078861 + (TA)n Simple_repeat Simple_repeat 1 173 0 1771 51 0 0 chrX 104521121 104521337 -58078593 - THE1A LTR MaLR -139 216 1 2025 245 61 55 chrX 104521337 104521723 -58078207 + L1ME1 LINE L1 5287 5669 -497 1952 148 0 3 chrX 104521723 104522033 -58077897 - AluSx SINE Alu -3 309 1 2025 245 61 55 chrX 104522033 104522296 -58077634 + L1ME1 LINE L1 5669 5944 -222 1905 144 13 16 chrX 104522296 104522602 -58077328 + AluSx SINE Alu 1 305 -7 2025 245 61 55 chrX 104522602 104522738 -58077192 + L1ME1 LINE L1 5944 6078 -88 276 223 54 45 chrX 104522830 104522942 -58076988 + L1ME1 LINE L1 6060 6331 -3 1669 274 61 28 chrX 104522945 104523781 -58076149 + L1ME2 LINE L1 4438 5301 -845 475 183 19 0 chrX 104523828 104523932 -58075998 - L1MA9 LINE L1 -6 6306 6201 1688 217 85 100 chrX 104523943 104524109 -58075821 + L1ME2 LINE L1 5330 5497 -667 1097 179 10 0 chrX 104524109 104524316 -58075614 - L1PA16 LINE L1 -16 6150 5942 1688 217 85 100 chrX 104524316 104524997 -58074933 + L1ME2 LINE L1 5497 6164 0 249 296 37 59 chrX 104525335 104525470 -58074460 + L1ME LINE L1 5392 5523 -598 319 221 32 53 chrX 104525480 104525575 -58074355 - MIR3 SINE MIR -110 98 6 232 292 21 10 chrX 104525731 104525827 -58074103 + L1MC4 LINE L1 6607 6703 -1339 194 215 0 15 chrX 104525867 104525932 -58073998 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 1546 102 0 0 chrX 104526521 104526717 -58073213 + AluSg/x SINE Alu 82 277 -33 1218 100 0 0 chrX 104526717 104526727 -58073203 + (GAAA)n Simple_repeat Simple_repeat 1 190 0 1218 100 0 0 chrX 104526727 104526907 -58073023 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 348 24 0 0 chrX 104527242 104527283 -58072647 + (CA)n Simple_repeat Simple_repeat 1 41 0 15892 113 14 11 chrX 104577975 104580527 -58019403 - HERV9 LTR ERV1 -1994 444 3 359 167 33 22 chrX 104580527 104580617 -58019313 - LTR30 LTR ERV1 -79 643 553 1358 104 153 1 chrX 104580618 104580867 -58019063 - LTR12 LTR ERV1 -406 2032 58 248 231 0 0 chrX 104580867 104580919 -58019011 - LTR30 LTR ERV1 -670 52 1 228 152 0 65 chrX 104581847 104581893 -58018037 + polypyrimidine Low_complexity Low_complexity 1 43 0 2940 197 42 3 chrX 104582378 104583042 -58016888 - L1ME1 LINE L1 -11 6950 6261 37450 35 3 1 chrX 104583091 104583466 -58016464 - L1PA4 LINE L1 -3 6152 5779 2765 23 0 0 chrX 104583466 104583774 -58016156 - AluY SINE Alu -2 309 2 37450 35 3 1 chrX 104583774 104588941 -58010989 - L1PA4 LINE L1 -376 5779 600 4663 220 74 31 chrX 104588938 104590691 -58009239 - L1ME1 LINE L1 -727 6234 4401 * 1868 278 96 70 chrX 104590728 104591787 -58008143 - L1ME1 LINE L1 -5321 1102 16 662 207 131 17 chrX 104591971 104592218 -58007712 - L1MD2 LINE L1 -9 6157 5900 272 218 39 13 chrX 104592371 104592449 -58007481 + MIR SINE MIR 183 262 0 26 0 0 0 chrX 104592759 104592785 -58007145 + AT_rich Low_complexity Low_complexity 1 26 0 2417 63 0 26 chrX 104592908 104593210 -58006720 - AluY SINE Alu -13 298 5 602 283 28 71 chrX 104593404 104593729 -58006201 - MLT1J LTR MaLR -200 311 1 1221 290 44 26 chrX 104593812 104594240 -58005690 + MLT1J2 LTR MaLR 1 436 -14 21 0 0 0 chrX 104594306 104594327 -58005603 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 104594548 104594569 -58005361 + AT_rich Low_complexity Low_complexity 1 21 0 2646 48 0 0 chrX 104594625 104594934 -58004996 + AluY SINE Alu 1 309 -2 303 314 0 43 chrX 104595046 104595256 -58004674 + L1M4 LINE L1 4456 4656 -1490 21 0 0 0 chrX 104596191 104596212 -58003718 + AT_rich Low_complexity Low_complexity 1 21 0 234 143 0 0 chrX 104596577 104596612 -58003318 + L1MC/D LINE L1 5776 5810 -1998 27 0 0 0 chrX 104596810 104596837 -58003093 + AT_rich Low_complexity Low_complexity 1 27 0 531 278 80 6 chrX 104598550 104598726 -58001204 + MER5A DNA MER1_type 1 189 0 225 0 0 0 chrX 104602883 104602908 -57997022 + (CA)n Simple_repeat Simple_repeat 2 26 0 331 228 215 6 chrX 104602915 104603073 -57996857 + MER69 DNA AcHobo 2323 2513 -13 2017 123 53 42 chrX 104603234 104603591 -57996339 - THE1B LTR MaLR -3 361 1 11576 93 8 11 chrX 104603591 104605177 -57994753 - THE1B-int LTR MaLR 0 1580 1 2133 119 57 25 chrX 104605177 104605530 -57994400 - THE1B LTR MaLR 0 364 1 624 78 35 0 chrX 104606302 104606418 -57993512 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 338 330 10 6 chrX 104607095 104607313 -57992617 + HERV16 LTR ERVL 1263 1505 -3491 1707 127 4 0 chrX 104607425 104607717 -57992213 + AluY SINE Alu 36 328 0 770 352 60 20 chrX 104607771 104608944 -57990986 + HERV16 LTR ERVL 3086 4318 -1336 401 319 58 47 chrX 104608988 104609179 -57990751 + LTR16C LTR ERVL 299 491 0 957 256 30 27 chrX 104609343 104609710 -57990220 + L1ME1 LINE L1 3044 3411 -2735 2185 118 0 0 chrX 104611095 104611384 -57988546 + AluSg SINE Alu 1 289 -21 387 280 0 20 chrX 104611400 104611500 -57988430 + L1MC/D LINE L1 15 112 -6430 487 270 35 0 chrX 104611726 104611841 -57988089 + L2 LINE L2 3191 3309 -4 24 0 0 0 chrX 104613151 104613175 -57986755 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 104613433 104613462 -57986468 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 104613575 104613597 -57986333 + AT_rich Low_complexity Low_complexity 1 22 0 271 361 33 37 chrX 104613944 104614243 -57985687 + L1MC/D LINE L1 125 422 -6222 2501 235 47 81 chrX 104614308 104614779 -57985151 + L1ME1 LINE L1 4964 5449 -717 4987 43 2 0 chrX 104614779 104615381 -57984549 + L1PA6 LINE L1 5551 6153 -1 2501 235 47 81 chrX 104615381 104616154 -57983776 + L1ME1 LINE L1 5449 6153 -13 4944 262 70 12 chrX 104616169 104618298 -57981632 + L1MC/D LINE L1 2772 5022 -1622 2293 155 32 37 chrX 104618526 104618720 -57981210 + MSTB1 LTR MaLR 1 194 -238 920 37 0 0 chrX 104618720 104618897 -57981033 + L1PA3 LINE L1 6040 6216 0 2293 155 32 37 chrX 104618897 104619133 -57980797 + MSTB1 LTR MaLR 194 430 -2 1207 227 39 6 chrX 104619135 104619466 -57980464 + L1MC/D LINE L1 5151 5492 -1152 454 163 0 25 chrX 104619468 104619548 -57980382 + L1MC1 LINE L1 6239 6316 -17 580 251 82 21 chrX 104619588 104619831 -57980099 + L1MC/D LINE L1 5480 5737 -907 273 29 0 0 chrX 104619835 104619869 -57980061 + (CA)n Simple_repeat Simple_repeat 1 34 0 851 204 160 48 chrX 104619870 104620164 -57979766 + L1MC/D LINE L1 5783 6109 -733 300 274 113 76 chrX 104620209 104620537 -57979393 - L1MEc LINE L1 -5039 1357 1018 2110 184 81 25 chrX 104620904 104621349 -57978581 - MLT2B1 LTR ERVL -50 470 1 4671 139 35 16 chrX 104621350 104621955 -57977975 - ERVL-B1 LTR ERVL -8 5756 5131 1994 115 3 104 chrX 104621955 104622329 -57977601 + MER1B DNA MER1_type 2 337 0 4671 139 35 16 chrX 104622329 104622498 -57977432 - ERVL-B1 LTR ERVL -633 5131 4967 992 168 42 5 chrX 104622501 104622715 -57977215 - L1MA9 LINE L1 0 6312 6091 686 153 8 15 chrX 104622717 104622848 -57977082 - L1MA9 LINE L1 -639 5673 5544 1634 162 15 25 chrX 104622850 104623177 -57976753 - L1MA9 LINE L1 -1734 4412 4089 3173 205 41 46 chrX 104623183 104623496 -57976434 - L1MA9 LINE L1 -2619 3527 3214 2388 101 0 0 chrX 104623496 104623803 -57976127 - AluSg SINE Alu -3 307 1 3173 205 41 46 chrX 104623803 104624466 -57975464 - L1MA9 LINE L1 -2932 3214 2556 6191 200 9 13 chrX 104624489 104626062 -57973868 + L1P5 LINE L1 3892 5454 -697 399 80 84 33 chrX 104626063 104626362 -57973568 + (TA)n Simple_repeat Simple_repeat 1 314 0 372 184 34 50 chrX 104626362 104626541 -57973389 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 1228 247 110 6 chrX 104626609 104626973 -57972957 - MLT2B1 LTR ERVL -116 404 3 4336 218 4 10 chrX 104627109 104628166 -57971764 + L1PB1 LINE L1 2941 3990 -2156 4440 83 27 5 chrX 104628166 104629171 -57970759 + MER11A LTR ERVK 1 1266 0 6327 174 11 0 chrX 104629172 104631287 -57968643 + L1PB1 LINE L1 3986 6114 -37 4710 109 1 0 chrX 104631349 104632034 -57967896 + L1PA14 LINE L1 5476 6161 0 184 283 0 0 chrX 104632368 104632414 -57967516 - MIR SINE MIR -212 50 5 704 243 33 0 chrX 104633168 104633349 -57966581 + MER90 LTR ERV1 3 189 -386 836 244 62 12 chrX 104633372 104633614 -57966316 + MER90 LTR ERV1 361 614 0 215 284 0 11 chrX 104633889 104633984 -57965946 + GA-rich Low_complexity Low_complexity 4 97 0 397 287 85 36 chrX 104634221 104634562 -57965368 + LTR50 LTR ERVL 302 523 0 1724 98 12 0 chrX 104634823 104635068 -57964862 - L1PB1 LINE L1 -1 6150 5903 1787 137 0 57 chrX 104635094 104635441 -57964489 - AluJb SINE Alu 0 330 1 27 49 0 0 chrX 104635729 104635770 -57964160 + AT_rich Low_complexity Low_complexity 1 41 0 1382 139 171 16 chrX 104635958 104636216 -57963714 + AluSg SINE Alu 1 298 -2 241 282 74 31 chrX 104636365 104636528 -57963402 - L1MC/D LINE L1 -1953 5855 5686 2916 173 18 6 chrX 104636910 104637420 -57962510 - LTR45 LTR ERV1 -7 518 3 386 168 70 2 chrX 104637548 104637688 -57962242 - MER53 DNA DNA 0 189 9 22 35 0 0 chrX 104638046 104638075 -57961855 + AT_rich Low_complexity Low_complexity 1 29 0 533 207 0 16 chrX 104638241 104638362 -57961568 - L1MA9 LINE L1 -14 6298 6180 1187 159 22 18 chrX 104638365 104638591 -57961339 - L1MA9 LINE L1 -232 6080 5854 944 244 37 15 chrX 104638583 104638854 -57961076 - L1MDb LINE L1 -5411 1132 856 * 662 321 48 19 chrX 104639052 104639367 -57960563 - L1MDb LINE L1 -6199 341 18 44 46 0 0 chrX 104640608 104640673 -57959257 + AT_rich Low_complexity Low_complexity 1 65 0 286 253 71 19 chrX 104640704 104640858 -57959072 + L1M4 LINE L1 4530 4691 -1455 242 184 0 0 chrX 104640863 104640901 -57959029 - MER34 LTR ERV1 -1 541 504 3622 145 99 9 chrX 104640901 104641557 -57958373 - MER4D LTR ERV1 -9 894 180 920 115 36 24 chrX 104641555 104641720 -57958210 + L1PA10 LINE L1 5895 6061 -107 * 753 75 0 0 chrX 104642123 104642230 -57957700 - L1MA1 LINE L1 0 6302 6196 749 73 0 45 chrX 104642237 104642347 -57957583 + L1PA10 LINE L1 6062 6166 -2 219 114 0 0 chrX 104642417 104642452 -57957478 + (TA)n Simple_repeat Simple_repeat 2 36 0 226 186 0 0 chrX 104642454 104642497 -57957433 + L1M3 LINE L1 5805 5847 -487 1029 129 5 72 chrX 104642500 104642709 -57957221 - MER4D LTR ERV1 -708 195 1 925 202 88 144 chrX 104642709 104643074 -57956856 - MER34 LTR ERV1 -28 514 187 1519 145 15 4 chrX 104643074 104643336 -57956594 - L1PA10 LINE L1 -3 6165 5901 925 202 88 144 chrX 104643336 104643504 -57956426 - MER34 LTR ERV1 -355 187 11 2010 174 97 26 chrX 104643564 104644019 -57955911 + MER4E LTR ERV1 1 487 -292 1867 173 3 32 chrX 104644015 104644385 -57955545 + MER4E LTR ERV1 413 771 -8 * 14700 160 12 10 chrX 104644769 104648115 -57951815 - L1MA1 LINE L1 0 7721 4361 2344 100 19 40 chrX 104648115 104648485 -57951445 - THE1B LTR MaLR -2 362 1 14700 160 12 10 chrX 104648485 104649777 -57950153 - L1MA1 LINE L1 -3360 4361 3073 2161 173 13 0 chrX 104649781 104650175 -57949755 - MER57A LTR ERV1 -4 399 1 31581 88 42 30 chrX 104650175 104655177 -57944753 - MER57A-int LTR ERV1 0 7537 2476 3868 109 69 25 chrX 104655176 104655551 -57944379 - MER57A-int LTR ERV1 -5166 2371 1955 * 207 0 0 0 chrX 104655551 104655574 -57944356 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3868 109 69 25 chrX 104655574 104655837 -57944093 - MER57A-int LTR ERV1 -5582 1955 1705 * 4766 116 20 1 chrX 104655829 104657042 -57942888 - MER57A-int LTR ERV1 -6259 1278 1 2380 145 18 0 chrX 104657047 104657439 -57942491 - MER57A LTR ERV1 -4 399 1 9168 169 37 5 chrX 104657439 104658707 -57941223 - L1MA1 LINE L1 -4489 3076 1735 366 23 0 0 chrX 104658707 104658750 -57941180 + (TC)n Simple_repeat Simple_repeat 2 44 0 9168 169 37 5 chrX 104658750 104659231 -57940699 - L1MA1 LINE L1 -5830 1735 1271 444 171 0 0 chrX 104659270 104659346 -57940584 - L1MA1 LINE L1 -6254 1311 1236 2252 272 30 32 chrX 104659372 104660176 -57939754 + MER77-int LTR ERV1 3422 4223 -2535 708 292 4 30 chrX 104660252 104660485 -57939445 + MER77-int LTR ERV1 1684 1910 -2281 274 330 25 32 chrX 104661197 104661476 -57938454 + MER70-int LTR ERVL 1814 2090 -2933 * 1130 244 40 88 chrX 104661329 104661830 -57938100 + MER77-int LTR ERV1 1943 2419 -1772 286 167 0 133 chrX 104661858 104661948 -57937982 + MER77-int LTR ERV1 2422 2499 -1692 3411 255 49 93 chrX 104662027 104663687 -57936243 + MER77-int LTR ERV1 2547 4133 -58 351 234 13 97 chrX 104664535 104664689 -57935241 + MER77 LTR ERV1 1 141 -464 252 0 0 0 chrX 104664702 104664730 -57935200 + (T)n Simple_repeat Simple_repeat 1 28 0 1058 283 22 24 chrX 104664827 104665198 -57934732 + MER77 LTR ERV1 234 603 -2 224 207 0 73 chrX 104665350 104665432 -57934498 + GA-rich Low_complexity Low_complexity 3 78 0 261 0 0 0 chrX 104668708 104668737 -57931193 + (CA)n Simple_repeat Simple_repeat 2 30 0 762 254 9 47 chrX 104668753 104668985 -57930945 - MER58A DNA MER1_type -1 223 1 245 339 32 0 chrX 104669711 104669835 -57930095 + LTR50 LTR ERVL 421 548 -247 1977 125 18 108 chrX 104670156 104670376 -57929554 - THE1B LTR MaLR 0 364 195 2323 88 3 0 chrX 104670376 104670684 -57929246 - AluY SINE Alu -2 309 1 1977 125 18 108 chrX 104670684 104670863 -57929067 - THE1B LTR MaLR -169 195 1 189 0 0 0 chrX 104671444 104671465 -57928465 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 465 271 0 13 chrX 104671704 104671859 -57928071 + L1M4 LINE L1 3947 4099 -2047 346 311 53 13 chrX 104675570 104675795 -57924135 - LTR50 LTR ERVL -121 674 441 476 184 237 16 chrX 104676036 104676226 -57923704 - LTR50 LTR ERVL -542 253 22 414 85 0 0 chrX 104676934 104676993 -57922937 + (CA)n Simple_repeat Simple_repeat 2 60 0 516 298 0 19 chrX 104678037 104678198 -57921732 + MER63A DNA MER1_type 53 210 0 334 339 59 0 chrX 104678442 104678560 -57921370 + MIR SINE MIR 35 159 -103 441 172 59 59 chrX 104678578 104678764 -57921166 + Charlie1 DNA MER1_type 2526 2711 -50 385 301 0 20 chrX 104680651 104680804 -57919126 - L1M4 LINE L1 -2048 4098 3949 1977 125 18 108 chrX 104681661 104681840 -57918090 + THE1B LTR MaLR 1 126 -238 2323 88 3 0 chrX 104681840 104682148 -57917782 + AluY SINE Alu 1 309 -2 1977 125 18 108 chrX 104682148 104682368 -57917562 + THE1B LTR MaLR 126 364 0 245 339 32 0 chrX 104682689 104682813 -57917117 - LTR50 LTR ERVL -247 548 421 762 254 9 47 chrX 104683539 104683771 -57916159 + MER58A DNA MER1_type 1 223 -1 261 0 0 0 chrX 104683787 104683816 -57916114 + (TG)n Simple_repeat Simple_repeat 2 30 0 224 207 0 73 chrX 104687092 104687174 -57912756 + CT-rich Low_complexity Low_complexity 3 78 0 1058 283 22 24 chrX 104687326 104687697 -57912233 - MER77 LTR ERV1 -2 603 234 252 0 0 0 chrX 104687794 104687822 -57912108 + (A)n Simple_repeat Simple_repeat 1 28 0 351 234 13 97 chrX 104687835 104687989 -57911941 - MER77 LTR ERV1 -464 141 1 3899 254 49 93 chrX 104688835 104690497 -57909433 - MER77-int LTR ERV1 -56 4135 2547 300 156 0 133 chrX 104690576 104690666 -57909264 - MER77-int LTR ERV1 -1692 2499 2422 1281 241 40 88 chrX 104690694 104691195 -57908735 - MER77-int LTR ERV1 -1772 2419 1943 351 330 25 32 chrX 104691048 104691327 -57908603 - MER70-int LTR ERVL -2933 2090 1814 * 777 292 4 30 chrX 104692039 104692272 -57907658 - MER77-int LTR ERV1 -2281 1910 1684 3287 305 34 24 chrX 104692340 104693536 -57906394 - MER77-int LTR ERV1 -2966 1225 18 1809 238 101 39 chrX 104693536 104694117 -57905813 - MER77 LTR ERV1 -2 603 6 1323 233 40 49 chrX 104695888 104696334 -57903596 - L1MB8 LINE L1 -2 6176 5735 347 221 25 25 chrX 104696329 104696451 -57903479 - L1MB8 LINE L1 -1714 4432 4311 * 7584 145 10 13 chrX 104696461 104698574 -57901356 - L1MA1 LINE L1 -164 6138 4028 8321 123 25 8 chrX 104698574 104699835 -57900095 + HSMAR1 DNA Mariner 3 1285 -2 7584 145 10 13 chrX 104699835 104699933 -57899997 - L1MA1 LINE L1 -2274 4028 3931 527 192 35 64 chrX 104699936 104699992 -57899938 - L1MB8 LINE L1 -1826 4320 4264 1441 183 31 28 chrX 104699992 104700281 -57899649 - AluJb SINE Alu -20 292 3 527 192 35 64 chrX 104700281 104700396 -57899534 - L1MB8 LINE L1 -1882 4264 4154 1584 125 39 56 chrX 104700398 104700758 -57899172 - L1MA8 LINE L1 -1 6290 5937 474 214 0 31 chrX 104700806 104700904 -57899026 + FRAM SINE Alu 55 149 -27 667 67 91 3 chrX 104700921 104701294 -57898636 + (TA)n Simple_repeat Simple_repeat 1 406 0 425 221 55 0 chrX 104701298 104701425 -57898505 - L1MA8 LINE L1 -2575 5420 5287 1755 60 0 0 chrX 104701425 104701641 -57898289 + THE1A LTR MaLR 1 216 -139 231 154 0 19 chrX 104701642 104701694 -57898236 - L1ME LINE L1 -5128 942 892 372 110 31 90 chrX 104701694 104702244 -57897686 + (TA)n Simple_repeat Simple_repeat 1 517 0 481 47 5 98 chrX 104702256 104702449 -57897481 + (TA)n Simple_repeat Simple_repeat 1 175 0 586 86 27 75 chrX 104702458 104702645 -57897285 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 401 96 32 90 chrX 104702646 104702834 -57897096 + (TA)n Simple_repeat Simple_repeat 2 178 0 230 74 26 111 chrX 104702932 104703121 -57896809 + (TA)n Simple_repeat Simple_repeat 1 173 0 1787 51 0 0 chrX 104703173 104703389 -57896541 - THE1A LTR MaLR -139 216 1 1966 245 61 55 chrX 104703389 104703775 -57896155 + L1ME1 LINE L1 5287 5669 -497 1982 148 0 3 chrX 104703775 104704085 -57895845 - AluSx SINE Alu -3 309 1 1966 245 61 55 chrX 104704085 104704348 -57895582 + L1ME1 LINE L1 5669 5944 -222 1934 144 13 16 chrX 104704348 104704654 -57895276 + AluSx SINE Alu 1 305 -7 1966 245 61 55 chrX 104704654 104704790 -57895140 + L1ME1 LINE L1 5944 6078 -88 266 223 54 45 chrX 104704882 104704994 -57894936 + L1ME1 LINE L1 6060 6331 -3 1592 274 61 28 chrX 104705000 104705833 -57894097 + L1ME2 LINE L1 4441 5301 -845 469 183 19 0 chrX 104705880 104705984 -57893946 - L1MA9 LINE L1 -6 6306 6201 1627 216 85 101 chrX 104705997 104706161 -57893769 + L1ME2 LINE L1 5332 5497 -667 1106 179 10 0 chrX 104706161 104706368 -57893562 - L1PA16 LINE L1 -16 6150 5942 1627 216 85 101 chrX 104706368 104707049 -57892881 + L1ME2 LINE L1 5497 6164 0 240 296 37 59 chrX 104707387 104707522 -57892408 + L1MC/D LINE L1 5392 5523 -598 324 221 32 53 chrX 104707532 104707627 -57892303 - MIR3 SINE MIR -110 98 6 225 154 58 19 chrX 104707728 104707780 -57892150 + LTR13 LTR ERVK 671 724 -283 300 292 21 10 chrX 104707783 104707879 -57892051 + L1MC4 LINE L1 6607 6703 -1339 194 215 0 15 chrX 104707919 104707984 -57891946 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 1568 102 0 0 chrX 104708573 104708769 -57891161 + AluSg/x SINE Alu 84 279 -33 1218 100 0 0 chrX 104708769 104708779 -57891151 + (GAAA)n Simple_repeat Simple_repeat 1 190 0 1218 100 0 0 chrX 104708779 104708959 -57890971 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 351 0 0 0 chrX 104709294 104709333 -57890597 + (CA)n Simple_repeat Simple_repeat 1 39 0 229 267 48 79 chrX 104710018 104710183 -57889747 + L1MC/D LINE L1 5666 5825 -1983 23 0 0 0 chrX 104710439 104710462 -57889468 + AT_rich Low_complexity Low_complexity 1 23 0 4784 251 70 23 chrX 104710801 104714527 -57885403 + L1M4 LINE L1 17 4112 -2532 1003 83 0 4 chrX 104714527 104714744 -57885186 + AluY SINE Alu 1 298 -13 742 263 33 16 chrX 104714746 104714989 -57884941 + L1M4 LINE L1 4109 4355 -2289 1035 228 24 40 chrX 104715554 104715883 -57884047 + L1M4 LINE L1 4351 4674 -1970 4071 217 212 57 chrX 104715897 104718196 -57881734 + L1M3e LINE L1 1 2633 -4474 676 285 74 33 chrX 104718905 104719372 -57880558 - MLT1-int LTR MaLR -765 606 2 515 206 9 19 chrX 104719409 104719516 -57880414 - MLT1F LTR MaLR -436 106 1 567 325 20 62 chrX 104719544 104719836 -57880094 + MER115 DNA AcHobo 1 280 -413 26 0 0 0 chrX 104722438 104722464 -57877466 + AT_rich Low_complexity Low_complexity 1 26 0 671 220 45 28 chrX 104722745 104722922 -57877008 - MER115 DNA AcHobo -12 681 502 360 0 0 0 chrX 104723124 104723164 -57876766 + (TG)n Simple_repeat Simple_repeat 2 41 0 438 172 5 220 chrX 104723172 104723358 -57876572 - MLT1E LTR MaLR -440 153 8 1621 203 57 33 chrX 104724552 104724964 -57874966 - MER74B LTR ERVL -86 536 123 1406 146 36 16 chrX 104725061 104725314 -57874616 - HERVL74 LTR ERVL -42 5643 5386 * 1610 146 61 41 chrX 104725311 104725653 -57874277 - HERVL74 LTR ERVL -434 5251 4903 681 184 125 36 chrX 104725670 104725838 -57874092 - FRAM SINE Alu 0 176 1 1324 203 38 13 chrX 104725838 104726159 -57873771 - MER39 LTR ERV1 -23 684 323 1556 147 91 47 chrX 104726163 104726528 -57873402 + THE1C LTR MaLR 1 391 -37 1983 155 0 3 chrX 104726528 104726838 -57873092 - AluSx SINE Alu -3 309 1 1556 147 91 47 chrX 104726838 104726878 -57873052 + THE1C LTR MaLR 391 428 0 247 224 47 35 chrX 104726935 104727020 -57872910 - LTR48B LTR ERV1 -558 86 1 1601 150 44 34 chrX 104727020 104727436 -57872494 - HERVL74 LTR ERVL -773 4912 4501 1905 159 0 0 chrX 104727436 104727738 -57872192 + AluJb SINE Alu 1 302 -10 1601 150 44 34 chrX 104727738 104727795 -57872135 - HERVL74 LTR ERVL -1184 4501 3908 919 182 0 0 chrX 104727797 104727951 -57871979 - HERVL74 LTR ERVL -2042 3643 3490 1200 197 17 21 chrX 104727956 104728189 -57871741 - HERVL74 LTR ERVL -2356 3329 3098 3514 176 32 9 chrX 104728201 104729081 -57870849 - HERVL74 LTR ERVL -3210 2475 1502 3355 105 36 40 chrX 104729303 104729915 -57870015 - MER4B LTR ERV1 0 779 1 2555 101 17 47 chrX 104729915 104730321 -57869609 - MER4B-int LTR ERV1 0 6758 6365 31655 107 20 34 chrX 104730367 104732914 -57867016 - MER4B-int LTR ERV1 -413 6345 3764 2176 120 3 0 chrX 104732914 104733214 -57866716 - AluSg SINE Alu -9 301 1 31655 107 20 34 chrX 104733214 104733378 -57866552 - MER4B-int LTR ERV1 -2994 3764 3599 2022 53 0 0 chrX 104733378 104733625 -57866305 + L1PA7 LINE L1 5895 6141 -13 31655 107 20 34 chrX 104733625 104736009 -57863921 - MER4B-int LTR ERV1 -3159 3599 1321 2278 56 164 240 chrX 104736008 104736637 -57863293 - LTR12 LTR ERV1 -133 581 1 * 6615 113 14 22 chrX 104736638 104737221 -57862709 - MER4B-int LTR ERV1 -5435 1323 752 2728 126 98 94 chrX 104737221 104737882 -57862048 - MER4A LTR ERV1 0 664 1 6615 113 14 22 chrX 104737882 104738393 -57861537 - MER4B-int LTR ERV1 -6006 752 238 1555 147 64 4 chrX 104738439 104738705 -57861225 - MER4B-int LTR ERV1 -6476 282 1 2642 140 97 2 chrX 104738705 104739265 -57860665 - MER4B LTR ERV1 0 779 1 965 196 24 10 chrX 104739294 104739503 -57860427 + MER93a LTR ERV1 191 402 0 1963 170 75 7 chrX 104739503 104739932 -57859998 - HERVL74 LTR ERVL -4175 1510 1053 30 0 0 0 chrX 104739936 104739966 -57859964 + AT_rich Low_complexity Low_complexity 1 30 0 280 303 187 11 chrX 104741803 104742070 -57857860 - MLT1-int LTR MaLR -765 606 293 386 222 0 59 chrX 104742301 104742436 -57857494 - L1M4 LINE L1 -1860 4286 4160 474 186 120 36 chrX 104742461 104742628 -57857302 - L1M4 LINE L1 -3729 2417 2237 1410 176 16 3 chrX 104742969 104743287 -57856643 + L1 LINE L1 4370 4691 -1455 626 225 75 21 chrX 104744578 104744927 -57855003 + MER31B LTR ERV1 11 508 -6 543 285 0 0 chrX 104745037 104745174 -57854756 + MER31B-int LTR ERV1 37 173 -4763 1240 163 16 65 chrX 104745512 104745819 -57854111 + MER31B-int LTR ERV1 1003 1294 -3642 653 180 12 35 chrX 104745861 104746033 -57853897 + MER31B-int LTR ERV1 1287 1454 -3482 1284 199 61 32 chrX 104746073 104746419 -57853511 + MER31B-int LTR ERV1 4561 4916 -20 731 236 19 14 chrX 104746419 104746812 -57853118 + MER31B LTR ERV1 1 514 0 268 314 5 48 chrX 104746977 104747165 -57852765 + (TG)n Simple_repeat Simple_repeat 1 180 0 2598 158 14 7 chrX 104747541 104747960 -57851970 + MSTB LTR MaLR 1 422 -4 320 340 0 7 chrX 104749378 104749531 -57850399 + (TG)n Simple_repeat Simple_repeat 1 152 0 17897 183 39 14 chrX 104750374 104751505 -57848425 - L1PA13 LINE L1 -1 6813 5711 2102 132 0 0 chrX 104751505 104751800 -57848130 - AluSx SINE Alu -17 295 1 17897 183 39 14 chrX 104751800 104757298 -57842632 - L1PA13 LINE L1 -1103 5711 1 236 271 8 34 chrX 104758474 104758592 -57841338 + (TG)n Simple_repeat Simple_repeat 2 116 0 223 381 0 17 chrX 104758966 104759139 -57840791 + (TG)n Simple_repeat Simple_repeat 2 171 0 * 282 299 32 13 chrX 104759103 104759260 -57840670 + (TATG)n Simple_repeat Simple_repeat 4 163 0 200 296 12 41 chrX 104760020 104760192 -57839738 + (TATG)n Simple_repeat Simple_repeat 4 170 0 2170 115 0 37 chrX 104760529 104760852 -57839078 - AluSx SINE Alu -1 311 1 222 389 0 6 chrX 104761331 104761571 -57838359 + (TG)n Simple_repeat Simple_repeat 1 238 0 319 326 7 7 chrX 104761621 104761756 -57838174 + (TG)n Simple_repeat Simple_repeat 2 136 0 192 216 0 0 chrX 104761902 104761953 -57837977 + (TG)n Simple_repeat Simple_repeat 2 52 0 220 374 0 0 chrX 104762355 104762478 -57837452 + (TG)n Simple_repeat Simple_repeat 1 123 0 2143 194 36 0 chrX 104763128 104763541 -57836389 - MSTA LTR MaLR 0 428 1 2264 99 10 10 chrX 104763727 104764040 -57835890 - AluSp SINE Alu 0 313 1 282 356 6 6 chrX 104764127 104764301 -57835629 + (TG)n Simple_repeat Simple_repeat 1 174 0 202 370 12 6 chrX 104764261 104764426 -57835504 + (TGAG)n Simple_repeat Simple_repeat 1 166 0 * 1388 159 34 4 chrX 104764575 104764808 -57835122 + L1PA13 LINE L1 11 250 -6537 * 17575 171 17 13 chrX 104764806 104766944 -57832986 + L1PA13 LINE L1 2226 4354 -2460 1959 128 10 36 chrX 104766944 104767248 -57832682 + AluSx SINE Alu 1 296 -16 17575 171 17 13 chrX 104767248 104768900 -57831030 + L1PA13 LINE L1 4354 6049 -765 2134 146 8 19 chrX 104768900 104769277 -57830653 - THE1C LTR MaLR -2 373 1 17575 171 17 13 chrX 104769277 104770047 -57829883 + L1PA13 LINE L1 6049 6814 0 390 42 0 0 chrX 104771365 104771413 -57828517 + (TA)n Simple_repeat Simple_repeat 1 48 0 810 332 6 6 chrX 104773245 104773576 -57826354 - LTR52-int LTR ERVL -750 2806 2476 312 285 85 51 chrX 104773996 104774231 -57825699 - LTR52-int LTR ERVL -3622 2063 1821 13317 26 0 0 chrX 104775330 104777669 -57822261 - L1PA3 LINE L1 0 6155 3816 240 0 0 0 chrX 104777669 104777698 -57822232 + L1PA3 LINE L1 3772 3800 -2346 2247 187 34 52 chrX 104779206 104779762 -57820168 - LTR55 LTR ERV -2 546 1 231 364 0 8 chrX 104780048 104780180 -57819750 + (TG)n Simple_repeat Simple_repeat 2 132 0 354 333 6 0 chrX 104780381 104780537 -57819393 + (TG)n Simple_repeat Simple_repeat 1 157 0 232 375 11 0 chrX 104780782 104780965 -57818965 + (TG)n Simple_repeat Simple_repeat 1 180 -357 2207 106 3 0 chrX 104780965 104781257 -57818673 + AluSg SINE Alu 1 293 -17 232 375 11 0 chrX 104781257 104781313 -57818617 + (TG)n Simple_repeat Simple_repeat 180 537 0 294 343 0 0 chrX 104781504 104781647 -57818283 + (TG)n Simple_repeat Simple_repeat 1 143 0 215 284 0 52 chrX 104782080 104782214 -57817716 + (TATG)n Simple_repeat Simple_repeat 3 129 0 261 351 18 6 chrX 104782367 104782535 -57817395 + (TG)n Simple_repeat Simple_repeat 1 170 0 370 326 12 0 chrX 104782702 104782874 -57817056 + (TG)n Simple_repeat Simple_repeat 1 174 0 319 375 6 0 chrX 104782894 104783070 -57816860 + (TG)n Simple_repeat Simple_repeat 2 178 0 218 397 0 0 chrX 104784104 104784250 -57815680 + (TG)n Simple_repeat Simple_repeat 2 147 0 395 382 20 20 chrX 104785055 104785207 -57814723 + MER91A DNA MER1_type 42 193 -3 396 0 0 0 chrX 104786474 104786518 -57813412 + (CA)n Simple_repeat Simple_repeat 2 45 0 230 330 111 44 chrX 104787237 104787507 -57812423 - L2 LINE L2 -667 2647 2360 342 0 0 0 chrX 104789021 104789059 -57810871 + (TG)n Simple_repeat Simple_repeat 1 38 0 2787 206 34 2 chrX 104789704 104790205 -57809725 - LTR53 LTR ERVL -2 517 1 2858 147 16 5 chrX 104790330 104790753 -57809177 + MSTA LTR MaLR 1 428 0 5903 208 40 16 chrX 104791026 104791315 -57808615 - HERVL74 LTR ERVL -2331 3354 3073 3474 185 28 55 chrX 104791315 104791985 -57807945 - MER82 DNA MER2_type -1 652 1 5903 208 40 16 chrX 104791985 104792011 -57807919 - HERVL74 LTR ERVL -2612 3073 3049 1877 195 28 38 chrX 104792011 104792405 -57807525 - MLT1B LTR MaLR 0 390 1 5903 208 40 16 chrX 104792405 104793323 -57806607 - HERVL74 LTR ERVL -2636 3049 2091 4013 174 30 18 chrX 104793340 104794009 -57805921 - HERVL74 LTR ERVL -1372 2184 1482 1885 146 18 0 chrX 104794009 104794333 -57805597 - AluSx SINE Alu 0 329 1 4013 174 30 18 chrX 104794333 104794509 -57805421 - HERVL74 LTR ERVL -2074 1482 1310 948 155 0 7 chrX 104795313 104795461 -57804469 - MER50 LTR ERV1 -130 604 458 2811 136 33 2 chrX 104796843 104797262 -57802668 - MSTB1 LTR MaLR 0 432 1 369 296 120 15 chrX 104797566 104797720 -57802210 - MIR3 SINE MIR -9 199 32 5411 136 43 8 chrX 104797809 104798715 -57801215 - Tigger3b DNA MER2_type -10 1221 284 421 191 124 0 chrX 104798718 104798807 -57801123 - Tigger3b DNA MER2_type -1129 102 3 229 270 16 0 chrX 104798888 104798951 -57800979 + L2 LINE L2 3250 3313 0 241 392 42 6 chrX 104798989 104799155 -57800775 - L2 LINE L2 -527 2787 2616 28 0 0 0 chrX 104799231 104799259 -57800671 + AT_rich Low_complexity Low_complexity 1 28 0 399 336 30 37 chrX 104799433 104799731 -57800199 + L1MEd LINE L1 517 812 -5307 2128 100 10 3 chrX 104799779 104800070 -57799860 + AluY SINE Alu 1 293 -18 40953 71 7 3 chrX 104800143 104806258 -57793672 + L1PA6 LINE L1 11 6148 -6 614 264 57 124 chrX 104806272 104806731 -57793199 + L1MEd LINE L1 884 1311 -4818 1658 157 37 37 chrX 104807132 104807431 -57792499 - AluJb SINE Alu -13 299 1 406 335 17 23 chrX 104807646 104807819 -57792111 + L3 LINE CR1 1399 1570 -7 183 244 0 0 chrX 104808399 104808440 -57791490 + MIR SINE MIR 120 160 -102 453 278 56 68 chrX 104809323 104809672 -57790258 + MLT1I LTR MaLR 69 409 0 864 174 0 7 chrX 104809781 104809919 -57790011 + AluJo SINE Alu 1 137 -175 180 0 0 0 chrX 104810082 104810102 -57789828 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 1909 244 61 47 chrX 104810102 104811010 -57788920 - L2 LINE L2 -14 3299 2369 3302 178 17 56 chrX 104811037 104811866 -57788064 - L1MB3 LINE L1 -2 6169 5315 214 29 57 0 chrX 104811866 104811901 -57788029 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2763 152 113 0 chrX 104811924 104812404 -57787526 - L1PA16 LINE L1 -2 6164 5631 920 220 95 26 chrX 104812404 104812709 -57787221 - L1MB3 LINE L1 -876 5270 4945 458 214 190 3 chrX 104813229 104813421 -57786509 + MIR SINE MIR 21 258 -4 345 341 87 0 chrX 104813452 104813590 -57786340 + L3 LINE CR1 1425 1574 -3 190 261 36 81 chrX 104814078 104814189 -57785741 + L2 LINE L2 2550 2655 -659 413 138 0 96 chrX 104815747 104815823 -57784107 - MIR SINE MIR -73 189 123 869 226 78 9 chrX 104815823 104816053 -57783877 + MIR SINE MIR 3 248 -14 191 231 15 77 chrX 104817108 104817173 -57782757 - L2 LINE L2 -1 3312 3252 508 274 76 0 chrX 104817361 104817518 -57782412 + L2 LINE L2 2476 2644 -670 670 277 190 18 chrX 104818147 104818615 -57781315 + L2 LINE L2 2659 3229 -84 812 81 0 0 chrX 104819664 104819763 -57780167 + HY3 scRNA scRNA 2 100 -1 24 0 0 0 chrX 104819763 104819787 -57780143 + AT_rich Low_complexity Low_complexity 1 24 0 970 294 82 36 chrX 104820013 104820571 -57779359 - L1ME3A LINE L1 -15 6155 5572 439 321 110 10 chrX 104820569 104820987 -57778943 - L1ME3A LINE L1 -3201 2945 2486 * 719 258 60 94 chrX 104820987 104821552 -57778378 + L1ME3A LINE L1 2457 3002 -3144 912 271 99 9 chrX 104821623 104822065 -57777865 + L1ME3A LINE L1 4349 4830 -1316 601 339 54 18 chrX 104822074 104822354 -57777576 + L2 LINE L2 314 603 -2711 383 356 109 40 chrX 104822833 104823229 -57776701 + L2 LINE L2 2552 2974 -340 208 325 57 41 chrX 104823397 104823520 -57776410 + L2 LINE L2 3188 3312 -1 339 273 0 74 chrX 104824802 104824923 -57775007 + L2 LINE L2 3200 3311 -2 180 268 0 70 chrX 104824981 104825052 -57774878 - L2 LINE L2 -334 2938 2873 572 223 23 70 chrX 104825254 104825447 -57774483 + L1ME3A LINE L1 5466 5649 -513 1357 178 28 0 chrX 104825454 104825667 -57774263 - MER20 DNA MER1_type 0 219 1 463 241 18 24 chrX 104825746 104825912 -57774018 + L1ME3A LINE L1 5783 5947 -223 334 286 62 34 chrX 104825963 104826141 -57773789 + L1ME3A LINE L1 5963 6145 -25 23 0 0 0 chrX 104826737 104826760 -57773170 + AT_rich Low_complexity Low_complexity 1 23 0 383 337 22 33 chrX 104826935 104827116 -57772814 - MIR3 SINE MIR 0 208 30 436 258 0 0 chrX 104827162 104827259 -57772671 - MIR3 SINE MIR -16 192 96 411 263 141 19 chrX 104827382 104827538 -57772392 - MLT1K LTR MaLR -17 571 397 2372 237 113 12 chrX 104828354 104828940 -57770990 - MLT2F LTR ERVL -13 650 6 254 333 25 8 chrX 104829830 104829960 -57769970 + MIR SINE MIR 30 160 -66 411 176 0 0 chrX 104830495 104830586 -57769344 + CT-rich Low_complexity Low_complexity 1 91 0 1288 256 92 34 chrX 104831140 104831617 -57768313 + LTR33 LTR ERVL 1 505 -16 1428 82 21 0 chrX 105031643 105031837 -57568093 - L1PA10 LINE L1 -108 6060 5863 1523 262 135 36 chrX 105031941 105032475 -57567455 + MLT1E2 LTR MaLR 37 623 -3 502 293 109 18 chrX 105032483 105032879 -57567051 + L1MDa LINE L1 1665 2096 -4444 366 297 36 18 chrX 105032889 105033054 -57566876 + L1MDa LINE L1 2183 2350 -4371 25 0 0 0 chrX 105033055 105033080 -57566850 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 105033091 105033113 -57566817 + AT_rich Low_complexity Low_complexity 1 22 0 671 230 88 14 chrX 105033113 105033330 -57566600 - L1PA16 LINE L1 -9 6157 5925 1079 308 30 15 chrX 105033607 105034038 -57565892 - ERVL LTR ERVL -3466 2019 1619 291 305 91 60 chrX 105034041 105034326 -57565604 - ERVL LTR ERVL -4154 1500 1207 455 338 22 0 chrX 105034419 105034558 -57565372 + HERVL LTR ERVL 4048 4189 -1465 * 1145 341 17 15 chrX 105034539 105035305 -57564625 + HERVL LTR ERVL 4297 5100 -664 4971 12 0 2 chrX 105036625 105037194 -57562736 - L1PA3 LINE L1 -1 6154 5587 2766 21 17 0 chrX 105037194 105037570 -57562360 + L1P LINE L1 5048 5427 -728 324 0 0 0 chrX 105037922 105037958 -57561972 + (TG)n Simple_repeat Simple_repeat 2 37 0 417 267 69 0 chrX 105038004 105038120 -57561810 - MER20B DNA MER1_type -593 190 67 435 224 134 0 chrX 105038145 105038279 -57561651 + L1ME LINE L1 5650 5801 -369 459 252 59 0 chrX 105039223 105039342 -57560588 + MIR SINE MIR 56 181 -81 821 78 0 0 chrX 105039484 105039636 -57560294 + AluY SINE Alu 181 332 0 248 344 56 16 chrX 105039989 105040114 -57559816 + L1ME3A LINE L1 140 269 -5936 1356 252 28 6 chrX 105040354 105040711 -57559219 + MLT1A1 LTR MaLR 1 365 0 2848 98 5 0 chrX 105041028 105041427 -57558503 - L1PA16 LINE L1 -262 5904 5504 7033 251 69 30 chrX 105041519 105044760 -57555170 + L1ME3A LINE L1 2119 5465 -750 944 212 55 21 chrX 105044884 105045120 -57554810 + L1ME3A LINE L1 5924 6167 -72 542 243 50 0 chrX 105045285 105045425 -57554505 + MLT1I LTR MaLR 1 147 -262 225 286 0 14 chrX 105045599 105045669 -57554261 - MIR SINE MIR -166 96 28 263 274 89 14 chrX 105046108 105046254 -57553676 - L1ME4a LINE L1 0 6121 5965 1544 201 61 48 chrX 105046259 105046717 -57553213 + MLT1C LTR MaLR 1 464 -3 463 270 20 25 chrX 105047121 105047317 -57552613 + L1MC4a LINE L1 5685 5879 -1929 24 0 0 0 chrX 105047776 105047800 -57552130 + AT_rich Low_complexity Low_complexity 1 24 0 204 294 0 20 chrX 105048349 105048400 -57551530 - L2 LINE L2 -14 3299 3250 226 274 234 8 chrX 105048408 105048532 -57551398 - MIR SINE MIR -108 154 3 618 303 81 38 chrX 105048565 105048975 -57550955 + MLT1J2 LTR MaLR 20 450 0 28 29 0 0 chrX 105050677 105050712 -57549218 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chrX 105052148 105052177 -57547753 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chrX 105052306 105052337 -57547593 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chrX 105053463 105053490 -57546440 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 351 0 0 0 chrX 105053489 105053528 -57546402 + (TG)n Simple_repeat Simple_repeat 2 40 0 263 176 59 0 chrX 105053622 105053673 -57546257 + L2 LINE L2 3217 3270 -2 21 0 0 0 chrX 105054877 105054898 -57545032 + AT_rich Low_complexity Low_complexity 1 21 0 337 286 158 24 chrX 105054958 105055255 -57544675 - L1ME4a LINE L1 -205 5916 5580 2006 106 16 3 chrX 105055332 105055653 -57544277 + L1MA4 LINE L1 5971 6295 -5 1761 152 25 0 chrX 105055661 105055965 -57543965 + AluJb SINE Alu 1 311 0 230 162 0 0 chrX 105055977 105056014 -57543916 + L1P LINE L1 4900 4936 -1210 843 115 0 0 chrX 105056573 105056686 -57543244 + FLAM_C SINE Alu 5 117 -26 36 23 0 0 chrX 105056687 105056730 -57543200 + AT_rich Low_complexity Low_complexity 1 43 0 5190 132 29 0 chrX 105056847 105057674 -57542256 - L1MA3 LINE L1 -5 6300 5450 228 229 21 0 chrX 105058024 105058072 -57541858 - MIR SINE MIR -2 260 212 1043 175 21 11 chrX 105058613 105058802 -57541128 - MER90 LTR ERV1 0 575 385 517 271 19 0 chrX 105058810 105058917 -57541013 + MER81 DNA DNA 6 114 0 1344 214 30 40 chrX 105058920 105059340 -57540590 - MER90 LTR ERV1 -194 420 1 226 246 0 0 chrX 105059742 105059799 -57540131 + (TA)n Simple_repeat Simple_repeat 2 58 0 741 278 73 28 chrX 105060469 105060796 -57539134 + L2 LINE L2 2584 2925 -389 880 315 164 9 chrX 105060797 105061261 -57538669 + L2 LINE L2 2442 2977 -337 1216 307 64 26 chrX 105061285 105061870 -57538060 + L2 LINE L2 2538 3159 -154 1777 149 10 14 chrX 105061870 105062165 -57537765 - AluJo SINE Alu -18 294 1 1216 307 64 26 chrX 105062165 105062308 -57537622 + L2 LINE L2 3159 3295 -18 487 236 70 115 chrX 105062498 105062854 -57537076 - L1MC4a LINE L1 -87 6034 5695 468 304 86 47 chrX 105062859 105063198 -57536732 - L1MC4a LINE L1 -1800 4346 3995 201 273 0 0 chrX 105063254 105063309 -57536621 + (TA)n Simple_repeat Simple_repeat 2 56 0 3977 145 11 5 chrX 105064276 105065251 -57534679 - L1PA16 LINE L1 -308 5858 4878 6092 165 30 6 chrX 105066056 105067256 -57532674 - L1MC1 LINE L1 -1 6332 5103 913 224 24 14 chrX 105067277 105067487 -57532443 - L1MC1 LINE L1 0 6333 6122 4338 234 34 15 chrX 105067489 105067634 -57532296 - L1MC1 LINE L1 -1046 5100 4959 216 0 0 0 chrX 105067634 105067658 -57532272 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4338 234 34 15 chrX 105067658 105068679 -57531251 - L1MC1 LINE L1 -1187 4959 3911 43388 47 1 1 chrX 105068688 105074839 -57525091 + L1PA4 LINE L1 1 6153 -2 1876 261 16 4 chrX 105074841 105075386 -57524544 - L1MC1 LINE L1 -2223 3923 3372 657 260 4 26 chrX 105075383 105075614 -57524316 - L1MC1 LINE L1 -3727 2419 2194 * 2572 101 15 18 chrX 105075614 105076009 -57523921 - L1PA13 LINE L1 -1 6162 5769 16093 205 22 25 chrX 105076014 105077332 -57522598 - L1PA13 LINE L1 -1257 5540 4219 1686 45 0 58 chrX 105077332 105077574 -57522356 - L1PA4 LINE L1 0 6155 5928 16093 205 22 25 chrX 105077574 105081782 -57518148 - L1PA13 LINE L1 -2578 4219 1 339 154 0 0 chrX 105082112 105082177 -57517753 + (CTA)n Simple_repeat Simple_repeat 1 65 0 529 342 122 22 chrX 105083110 105083619 -57516311 - L2 LINE L2 -625 2689 2130 1034 236 64 80 chrX 105085571 105085948 -57513982 - MLT1A2 LTR MaLR 0 374 4 2742 243 47 11 chrX 105085955 105086756 -57513174 - L1 LINE L1 -971 5175 4346 213 350 41 21 chrX 105087228 105087325 -57512605 - MIR3 SINE MIR -49 159 61 598 325 5 5 chrX 105087345 105087548 -57512382 + MIR SINE MIR 57 259 -3 296 250 88 0 chrX 105087586 105087666 -57512264 - Charlie4 DNA MER1_type -1855 106 20 1094 296 94 24 chrX 105087901 105088316 -57511614 - LTR16A LTR ERVL 0 450 7 315 303 148 30 chrX 105088451 105088844 -57511086 + L1M4 LINE L1 4957 5395 -751 207 0 0 0 chrX 105088904 105088927 -57511003 + (T)n Simple_repeat Simple_repeat 1 23 0 1991 256 26 31 chrX 105088945 105089522 -57510408 - L1ME3A LINE L1 -1 6169 5596 1840 164 0 20 chrX 105090452 105090756 -57509174 - AluJb SINE Alu -14 298 1 221 222 12 74 chrX 105090797 105090878 -57509052 + L2 LINE L2 3014 3089 -183 454 221 21 11 chrX 105091030 105091125 -57508805 + MER5B DNA MER1_type 83 178 0 7098 136 19 6 chrX 105091656 105093833 -57506097 - L1MA2 LINE L1 0 7723 5518 2188 143 4 18 chrX 105093833 105093953 -57505977 - L1MA2 LINE L1 -3707 3858 3738 2123 128 3 0 chrX 105093953 105094250 -57505680 - AluSp SINE Alu -15 298 1 2188 143 4 18 chrX 105094250 105094686 -57505244 - L1MA2 LINE L1 -3827 3738 3315 8833 73 14 21 chrX 105094686 105095008 -57504922 - HERV17 LTR ERV1 -7453 1173 850 2561 57 0 13 chrX 105095008 105095323 -57504607 - AluY SINE Alu 0 311 1 8833 73 14 21 chrX 105095323 105096180 -57503750 - HERV17 LTR ERV1 -7776 850 2 3672 69 67 4 chrX 105096180 105096673 -57503257 - LTR17 LTR ERV1 0 780 257 7458 108 16 25 chrX 105096676 105097932 -57501998 - L1MA2 LINE L1 -4237 3328 2084 2162 216 100 20 chrX 105097933 105098631 -57501299 + L1MC/D LINE L1 911 1664 -4762 4239 214 38 24 chrX 105098633 105099923 -57500007 + L1MA9 LINE L1 4834 6142 -170 189 0 0 0 chrX 105099923 105099944 -57499986 + (CA)n Simple_repeat Simple_repeat 1 21 0 4239 214 38 24 chrX 105099944 105100118 -57499812 + L1MA9 LINE L1 6142 6312 0 2848 209 47 19 chrX 105100154 105101607 -57498323 + L1MC/D LINE L1 4593 6094 -428 475 192 20 0 chrX 105101607 105101706 -57498224 + L1MD2 LINE L1 6259 6359 0 207 281 0 16 chrX 105101787 105101851 -57498079 + MIR SINE MIR 34 96 -166 444 257 73 26 chrX 105101853 105102045 -57497885 - L1ME LINE L1 -589 5532 5332 * 1585 262 99 12 chrX 105102038 105102786 -57497144 - L1ME LINE L1 -2421 3725 2913 496 223 97 6 chrX 105102814 105102989 -57496941 - L1ME LINE L1 -690 5474 5284 1570 94 0 19 chrX 105102995 105103249 -57496681 - AluSg/x SINE Alu 0 323 74 732 75 132 0 chrX 105103249 105103355 -57496575 - AluSq/x SINE Alu -192 120 1 2688 229 55 27 chrX 105103356 105104067 -57495863 - L1ME LINE L1 -866 5280 4538 1778 139 24 35 chrX 105104067 105104403 -57495527 + AluJb SINE Alu 1 333 0 2688 229 55 27 chrX 105104403 105104569 -57495361 - L1ME LINE L1 -1608 4538 4378 626 172 0 8 chrX 105104586 105104720 -57495210 + (TA)n Simple_repeat Simple_repeat 1 133 0 2181 117 0 0 chrX 105104746 105105048 -57494882 - AluSx SINE Alu 0 304 3 2570 256 90 59 chrX 105105077 105106529 -57493401 - L1ME LINE L1 -1785 4361 2850 351 0 0 0 chrX 105106529 105106568 -57493362 + (CA)n Simple_repeat Simple_repeat 2 40 0 2570 256 90 59 chrX 105106568 105106782 -57493148 - L1ME LINE L1 -3296 2850 2644 896 322 39 37 chrX 105107052 105107537 -57492393 + ERVL LTR ERVL 4956 5441 -323 816 191 0 0 chrX 105107559 105107737 -57492193 + (TA)n Simple_repeat Simple_repeat 2 179 0 273 29 0 0 chrX 105108091 105108125 -57491805 + (TG)n Simple_repeat Simple_repeat 1 34 0 1087 259 29 3 chrX 105108956 105109299 -57490631 + L1MC/D LINE L1 3394 3745 -2401 952 216 0 19 chrX 105110658 105110866 -57489064 - AluJo SINE Alu -22 290 87 22 0 0 0 chrX 105111182 105111204 -57488726 + AT_rich Low_complexity Low_complexity 1 22 0 425 281 116 0 chrX 105111260 105111406 -57488524 + LTR50 LTR ERVL 22 184 -611 457 279 119 0 chrX 105111412 105111613 -57488317 - L1M4 LINE L1 -2316 4034 3810 2308 288 75 18 chrX 105111651 105111691 -57488239 + L1MEc LINE L1 45 81 -6315 1995 206 63 33 chrX 105111691 105112181 -57487749 - MLT1D LTR MaLR 0 505 1 2308 288 75 18 chrX 105112181 105113124 -57486806 + L1MEc LINE L1 81 1084 -5312 * 2858 192 32 11 chrX 105113119 105114174 -57485756 + L1MC/D LINE L1 4597 5672 -672 1539 304 53 4 chrX 105114244 105114770 -57485160 - L1M4 LINE L1 -4863 1418 867 809 261 96 14 chrX 105115443 105115661 -57484269 - MIR SINE MIR -24 238 3 332 324 129 61 chrX 105115805 105116269 -57483661 - L2 LINE L2 -2309 1005 469 2451 50 13 3 chrX 105116269 105116570 -57483360 + AluY SINE Alu 1 304 -7 332 324 129 61 chrX 105116570 105116859 -57483071 - L2 LINE L2 -2845 469 201 207 227 0 0 chrX 105118530 105118574 -57481356 - L2 LINE L2 0 3313 3270 586 219 6 107 chrX 105118653 105118831 -57481099 + MIR SINE MIR 12 171 -91 288 219 35 88 chrX 105118846 105118960 -57480970 + MIR SINE MIR 131 238 -24 820 325 0 4 chrX 105119290 105119539 -57480391 - L3 LINE CR1 -54 1523 1276 35 0 0 0 chrX 105119633 105119668 -57480262 + AT_rich Low_complexity Low_complexity 1 35 0 253 195 299 0 chrX 105120052 105120129 -57479801 + L2 LINE L2 3173 3272 0 2266 98 3 0 chrX 105121665 105121961 -57477969 - AluSp SINE Alu -16 297 1 2114 98 40 0 chrX 105122591 105122887 -57477043 + AluSq SINE Alu 1 308 -5 339 85 0 51 chrX 105123813 105123872 -57476058 - L1PA8 LINE L1 -3 6169 6114 1401 125 0 9 chrX 105124998 105125214 -57474716 - AluSg/x SINE Alu -15 297 84 986 113 14 0 chrX 105125318 105125459 -57474471 + AluSg/x SINE Alu 144 286 -24 739 208 124 0 chrX 105125500 105125678 -57474252 + MER3 DNA MER1_type 5 204 -5 241 143 102 0 chrX 105125640 105125689 -57474241 - MER3 DNA MER1_type -119 90 37 * 2364 56 7 16 chrX 105125841 105126144 -57473786 + AluY SINE Alu 1 300 -11 5012 175 50 19 chrX 105126334 105127324 -57472606 - L1MD2 LINE L1 -12 6347 5328 204 331 108 7 chrX 105127924 105128063 -57471867 + L2 LINE L2 2825 2977 -336 1502 169 60 25 chrX 105128239 105128558 -57471372 + L1ME1 LINE L1 5834 6163 -3 1558 142 6 122 chrX 105129010 105129355 -57470575 - AluJb SINE Alu -7 305 1 6302 194 137 10 chrX 105129388 105131034 -57468896 + L1P LINE L1 2789 4642 -1504 1187 141 0 11 chrX 105131139 105131316 -57468614 + AluJb SINE Alu 109 283 -29 9544 22 1 4 chrX 105132453 105134431 -57465499 + L1PA4 LINE L1 4186 6155 0 2198 126 0 0 chrX 105134444 105134738 -57465192 - AluSx SINE Alu -18 294 1 487 280 64 6 chrX 105135370 105135527 -57464403 + MIR3 SINE MIR 36 201 -7 263 299 58 52 chrX 105136005 105136159 -57463771 - L2 LINE L2 0 3313 3159 198 0 0 0 chrX 105136603 105136625 -57463305 + (A)n Simple_repeat Simple_repeat 1 22 0 2225 39 29 29 chrX 105136769 105137077 -57462853 + AluY SINE Alu 1 308 0 202 268 158 24 chrX 105138016 105138143 -57461787 + L2 LINE L2 2268 2411 -903 1120 280 113 19 chrX 105138326 105139054 -57460876 - L1ME4a LINE L1 -8 6113 5318 2509 206 43 90 chrX 105139186 105139438 -57460492 + L1M4 LINE L1 5 267 -6275 2297 96 0 26 chrX 105139438 105139750 -57460180 + AluSx SINE Alu 1 304 -8 2509 206 43 90 chrX 105139750 105140262 -57459668 + L1M4 LINE L1 267 733 -5809 2206 34 19 0 chrX 105140277 105140542 -57459388 + L1PA3 LINE L1 5886 6155 0 290 57 0 19 chrX 105140550 105140603 -57459327 + L1MB7 LINE L1 3174 3225 -2921 5405 204 29 43 chrX 105140790 105142372 -57457558 + L1MB7 LINE L1 3319 4878 -1268 511 186 0 10 chrX 105142367 105142464 -57457466 + L1MB7 LINE L1 5440 5535 -643 * 22 0 0 0 chrX 105142484 105142506 -57457424 + AT_rich Low_complexity Low_complexity 1 22 0 1483 165 34 9 chrX 105142512 105142834 -57457096 + L1MB7 LINE L1 5513 5842 -342 21839 160 18 6 chrX 105142936 105149614 -57450316 - L1 LINE L1 -785 6780 16 630 275 45 11 chrX 105149854 105150032 -57449898 + MER5A DNA MER1_type 1 184 -5 338 336 34 20 chrX 105150223 105150369 -57449561 + MIR3 SINE MIR 58 205 -3 619 231 135 0 chrX 105150546 105150702 -57449228 + MER5B DNA MER1_type 1 177 -1 183 147 0 0 chrX 105150890 105150924 -57449006 + L2 LINE L2 2627 2660 -654 1408 223 52 45 chrX 105150961 105151427 -57448503 - MLT1J LTR MaLR -40 471 3 448 352 95 37 chrX 105151429 105151702 -57448228 + L2 LINE L2 2657 2945 -369 393 253 18 77 chrX 105151769 105151939 -57447991 + L2 LINE L2 3130 3289 -24 868 166 0 7 chrX 105152052 105152191 -57447739 - FLAM_C SINE Alu -5 138 1 1593 278 63 52 chrX 105154582 105155472 -57444458 + L1M4 LINE L1 17 916 -5626 207 313 183 9 chrX 105155475 105155590 -57444340 - MIR SINE MIR -121 141 7 532 187 167 20 chrX 105155627 105155777 -57444153 - MER69A DNA AcHobo -5 172 1 571 220 200 13 chrX 105156051 105156201 -57443729 + MIR SINE MIR 77 254 -8 395 304 160 22 chrX 105156383 105156751 -57443179 + MLT1J2 LTR MaLR 1 419 -31 2515 55 0 0 chrX 105157028 105157321 -57442609 - AluSc SINE Alu -16 293 1 1795 164 5 48 chrX 105157412 105157790 -57442140 + L1MB4 LINE L1 5308 5669 -511 8546 169 36 42 chrX 105157800 105159565 -57440365 + L1M1 LINE L1 16 1772 -5793 198 0 0 0 chrX 105159565 105159587 -57440343 + (GA)n Simple_repeat Simple_repeat 2 23 0 8546 169 36 42 chrX 105159587 105159673 -57440257 + L1M1 LINE L1 1772 1857 -5708 1402 141 12 0 chrX 105159700 105159942 -57439988 + L1MB4 LINE L1 5935 6179 -1 285 292 130 47 chrX 105160176 105160498 -57439432 + L1MC4a LINE L1 5255 5607 -527 603 124 9 19 chrX 105160503 105160608 -57439322 + L1PB4 LINE L1 5781 5884 -272 843 239 71 57 chrX 105160623 105161029 -57438901 + L1MC4a LINE L1 5677 6088 -1720 198 316 53 59 chrX 105163333 105163485 -57436445 - L2 LINE L2 -206 3066 2916 236 261 65 54 chrX 105163542 105163634 -57436296 + L2 LINE L2 2424 2516 -798 26 30 0 0 chrX 105164016 105164049 -57435881 + AT_rich Low_complexity Low_complexity 1 33 0 1895 130 0 27 chrX 105164287 105164607 -57435323 + AluJb SINE Alu 1 312 0 804 226 285 10 chrX 105164643 105164948 -57434982 + L2 LINE L2 2925 3313 0 1358 188 56 0 chrX 105166380 105166667 -57433263 + MER58B DNA MER1_type 31 333 -8 2484 59 0 3 chrX 105167853 105168159 -57431771 + AluY SINE Alu 2 306 -5 224 354 132 16 chrX 105168183 105168426 -57431504 - L2 LINE L2 -584 2730 2460 2085 123 14 3 chrX 105170160 105170452 -57429478 - AluSx SINE Alu -17 295 1 187 291 177 0 chrX 105170660 105170739 -57429191 - MIR SINE MIR -105 157 65 1022 114 0 0 chrX 105171313 105171445 -57428485 - FLAM_C SINE Alu -11 132 1 749 211 107 41 chrX 105171586 105171828 -57428102 + MIR SINE MIR 3 260 -2 540 218 228 21 chrX 105172708 105172901 -57427029 + MIR SINE MIR 30 262 0 380 191 22 34 chrX 105173158 105173247 -57426683 + L3 LINE CR1 1409 1496 -81 473 225 179 7 chrX 105173255 105173406 -57426524 - MER5A DNA MER1_type -1 188 12 352 250 77 0 chrX 105174073 105174177 -57425753 - L1MC4 LINE L1 -29 8013 7902 2344 67 7 0 chrX 105174218 105174501 -57425429 + AluSq SINE Alu 1 285 -28 198 103 0 0 chrX 105174501 105174530 -57425400 + (TA)n Simple_repeat Simple_repeat 2 30 0 351 320 184 34 chrX 105174545 105174932 -57424998 + L2 LINE L2 2807 3251 -21 978 280 102 54 chrX 105174932 105175700 -57424230 + L2 LINE L2 2279 3108 -164 191 195 0 24 chrX 105176179 105176220 -57423710 + L3b LINE CR1 1539 1578 -5 750 201 78 55 chrX 105176564 105176783 -57423147 - MIR SINE MIR -24 238 15 736 288 36 16 chrX 105179206 105179456 -57420474 + MIR SINE MIR 2 256 -6 431 273 23 114 chrX 105179575 105179795 -57420135 + MIR3 SINE MIR 2 201 -7 180 250 23 0 chrX 105180087 105180131 -57419799 - MIR SINE MIR 0 262 218 420 314 108 11 chrX 105180164 105180349 -57419581 + MIR SINE MIR 2 204 -58 768 240 23 0 chrX 105181875 105182046 -57417884 + MIR SINE MIR 64 238 -24 285 296 51 20 chrX 105183449 105183547 -57416383 - L2 LINE L2 -4 3268 3168 1884 174 30 3 chrX 105183869 105184202 -57415728 - MER2 DNA MER2_type -1 343 2 269 164 211 10 chrX 105184362 105184466 -57415464 - L1ME4a LINE L1 -4 6117 5993 22 0 0 0 chrX 105184523 105184545 -57415385 + AT_rich Low_complexity Low_complexity 1 22 0 2088 141 0 0 chrX 105184616 105184928 -57415002 - AluSx SINE Alu 0 312 1 548 223 40 14 chrX 105185536 105185684 -57414246 - L1ME3A LINE L1 -9 6161 6010 373 186 116 23 chrX 105186376 105186505 -57413425 + L1ME4a LINE L1 5978 6118 -3 740 20 0 59 chrX 105188146 105188247 -57411683 - L1PA3 LINE L1 0 6155 6061 2138 138 30 3 chrX 105188261 105188595 -57411335 + MER2 DNA MER2_type 1 343 -1 508 273 87 7 chrX 105189051 105189201 -57410729 + MIR SINE MIR 1 162 -100 1479 159 60 3 chrX 105189465 105189748 -57410182 + L1MB7 LINE L1 5868 6166 -18 482 31 0 15 chrX 105189784 105189849 -57410081 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 617 273 43 79 chrX 105190397 105190745 -57409185 + MLT1J2 LTR MaLR 1 338 -112 288 337 121 36 chrX 105191046 105191378 -57408552 + L2 LINE L2 2949 3308 -5 1802 276 99 28 chrX 105193385 105194195 -57405735 + L1M4 LINE L1 327 1193 -5662 923 145 113 16 chrX 105194245 105194548 -57405382 + L1M4 LINE L1 1429 6323 -832 293 47 0 23 chrX 105194537 105194580 -57405350 - L1MA1 LINE L1 -47 6255 6214 * 1896 151 13 0 chrX 105194594 105194912 -57405018 + L1MA5 LINE L1 5689 6010 -290 * 3325 184 17 14 chrX 105194910 105195825 -57404105 - L1M4 LINE L1 -610 5564 4648 1960 125 78 14 chrX 105196120 105196464 -57403466 + THE1C LTR MaLR 10 375 0 6583 101 55 94 chrX 105196464 105197725 -57402205 + THE1C-int LTR MaLR 1 1211 -369 3270 112 6 12 chrX 105197916 105198397 -57401533 + THE1C-int LTR MaLR 1103 1580 0 2210 101 70 14 chrX 105198397 105198752 -57401178 + THE1C LTR MaLR 1 375 0 306 0 0 0 chrX 105201875 105201909 -57398021 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4440 34 0 0 chrX 105201909 105202441 -57397489 - L1PA3 LINE L1 -10 6145 5614 344 155 56 0 chrX 105202602 105202673 -57397257 + L1PA15 LINE L1 6085 6159 -6 2175 85 14 3 chrX 105202681 105202974 -57396956 + AluSp SINE Alu 3 298 -15 1804 160 15 12 chrX 105202976 105203319 -57396611 + L1MA6 LINE L1 5953 6296 -4 3858 115 8 26 chrX 105203671 105204420 -57395510 - L1PA15 LINE L1 -332 5833 5104 3509 149 2 10 chrX 105204421 105205023 -57394907 - L1MA5 LINE L1 -428 5872 5276 7293 145 13 6 chrX 105205201 105207540 -57392390 - L1MA3 LINE L1 0 6305 3951 19397 31 0 1 chrX 105207546 105210675 -57389255 - L1PA2 LINE L1 -2 6153 3026 21 36 0 0 chrX 105211709 105211737 -57388193 + AT_rich Low_complexity Low_complexity 1 28 0 2365 21 7 3 chrX 105211793 105212077 -57387853 + L1PA4 LINE L1 5868 6152 -3 285 216 235 20 chrX 105214471 105214573 -57385357 - MIR SINE MIR -50 212 89 27 22 0 22 chrX 105215471 105215484 -57384446 + AT_rich Low_complexity Low_complexity 1 13 -31 1763 164 0 43 chrX 105215484 105215783 -57384147 - AluJb SINE Alu -22 290 5 27 22 0 22 chrX 105215783 105215814 -57384116 + AT_rich Low_complexity Low_complexity 13 44 0 1195 184 84 48 chrX 105216616 105216948 -57382982 - MER2 DNA MER2_type 0 344 1 24 0 0 0 chrX 105218708 105218732 -57381198 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 105218966 105218988 -57380942 + AT_rich Low_complexity Low_complexity 1 22 0 866 236 85 32 chrX 105220142 105220388 -57379542 + MIR SINE MIR 4 262 0 2100 120 62 3 chrX 105220813 105221154 -57378776 - MER46B DNA MER2_type 0 236 1 4577 29 7 0 chrX 105222178 105222725 -57377205 - L1PA4 LINE L1 -1725 4421 3871 8202 25 0 1 chrX 105222731 105224177 -57375753 + L1PA4 LINE L1 4415 5859 -296 4045 48 0 0 chrX 105224177 105224659 -57375271 + L1PA3 LINE L1 5655 6154 -1 375 179 15 0 chrX 105225263 105225330 -57374600 - L1MC5 LINE L1 -171 7790 7723 1951 117 3 31 chrX 105225359 105225681 -57374249 + AluSx SINE Alu 1 314 0 183 267 0 0 chrX 105225683 105225728 -57374202 - MER5B DNA MER1_type -128 50 6 334 299 68 0 chrX 105225732 105225849 -57374081 - L3 LINE CR1 -840 737 613 1673 175 0 13 chrX 105226970 105227273 -57372657 - AluJb SINE Alu -13 299 1 192 152 0 0 chrX 105227490 105227523 -57372407 + T-rich Low_complexity Low_complexity 1 33 0 286 299 0 94 chrX 105228534 105228603 -57371327 + L2 LINE L2 3158 3211 -102 2330 100 0 0 chrX 105228603 105228914 -57371016 - AluSq SINE Alu -2 311 1 286 299 0 94 chrX 105228914 105228971 -57370959 + L2 LINE L2 3211 3272 -41 * 305 238 0 38 chrX 105228966 105229046 -57370884 + L2 LINE L2 1735 1811 -1503 * 963 286 71 3 chrX 105229032 105229354 -57370576 + L2 LINE L2 2965 3308 -5 716 142 0 0 chrX 105229529 105229635 -57370295 - FLAM_A SINE Alu -36 106 1 357 148 0 62 chrX 105230200 105230281 -57369649 - MIR SINE MIR -68 194 119 1997 134 0 0 chrX 105230430 105230745 -57369185 - AluSx SINE Alu 0 315 1 27 0 0 0 chrX 105230748 105230775 -57369155 + AT_rich Low_complexity Low_complexity 1 27 0 216 67 0 0 chrX 105231275 105231305 -57368625 + (TG)n Simple_repeat Simple_repeat 1 30 0 1512 158 25 54 chrX 105233126 105233443 -57366487 + AluJo SINE Alu 1 308 -4 1868 130 49 0 chrX 105233611 105233895 -57366035 - AluJb SINE Alu -14 298 1 200 324 65 28 chrX 105234499 105234607 -57365323 - MIR3 SINE MIR -94 114 3 356 299 185 0 chrX 105236198 105236355 -57363575 - MIR SINE MIR -3 259 74 540 281 93 27 chrX 105237691 105237892 -57362038 - MIR SINE MIR -39 223 14 202 289 54 84 chrX 105237904 105238070 -57361860 + L2 LINE L2 2323 2483 -831 288 0 0 0 chrX 105238076 105238108 -57361822 + (CA)n Simple_repeat Simple_repeat 2 33 0 427 323 146 0 chrX 105238567 105238725 -57361205 + MER5A DNA MER1_type 9 189 0 1649 153 7 28 chrX 105238877 105239165 -57360765 + AluJb SINE Alu 1 282 -30 24 77 0 0 chrX 105239503 105239555 -57360375 + AT_rich Low_complexity Low_complexity 1 52 0 2248 221 33 6 chrX 105239964 105240508 -57359422 + L1MB8 LINE L1 5607 6332 -2 2393 169 26 9 chrX 105241075 105241494 -57358436 + MSTB LTR MaLR 1 426 0 21 36 0 0 chrX 105241531 105241559 -57358371 + AT_rich Low_complexity Low_complexity 1 28 0 1621 106 25 22 chrX 105243454 105243728 -57356202 - L1MA2 LINE L1 0 6304 6030 280 53 0 0 chrX 105244030 105244068 -57355862 - tRNA-Ile-ATT tRNA tRNA -39 38 1 180 111 0 0 chrX 105244493 105244520 -57355410 + (T)n Simple_repeat Simple_repeat 1 27 0 796 167 8 0 chrX 105245706 105245895 -57354035 + FLAM_C SINE Alu 1 190 0 1628 135 109 29 chrX 105246072 105246419 -57353511 + THE1C LTR MaLR 1 375 0 353 190 0 0 chrX 105246439 105246497 -57353433 - L2 LINE L2 -1 3271 3214 28 29 0 0 chrX 105247727 105247762 -57352168 + AT_rich Low_complexity Low_complexity 1 35 0 1562 164 56 4 chrX 105247965 105248075 -57351855 + AluJo SINE Alu 14 117 -195 233 57 29 0 chrX 105248075 105248110 -57351820 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1562 164 56 4 chrX 105248110 105248268 -57351662 + AluJo SINE Alu 117 296 -16 270 274 108 19 chrX 105248559 105248716 -57351214 - L1MC/D LINE L1 -1960 5848 5678 291 285 112 14 chrX 105248981 105249195 -57350735 - L1MEc LINE L1 -3769 2446 2212 15056 122 17 33 chrX 105249197 105251320 -57348610 + Tigger1 DNA MER2_type 2 2083 -335 4567 56 0 0 chrX 105251320 105251890 -57348040 + L1PA5 LINE L1 5584 6153 -1 15056 122 17 33 chrX 105251890 105252221 -57347709 + Tigger1 DNA MER2_type 2083 2418 0 228 242 20 20 chrX 105252230 105252329 -57347601 - L1MEc LINE L1 -4155 2241 2143 3419 82 6 0 chrX 105252347 105252820 -57347110 - L1PA7 LINE L1 -873 5273 4798 6932 53 2 0 chrX 105252820 105253728 -57346202 + L1PA7 LINE L1 5277 6186 0 476 245 50 25 chrX 105253769 105253928 -57346002 - L1MEc LINE L1 -4320 2076 1914 547 214 35 52 chrX 105254303 105254476 -57345454 - L1MEc LINE L1 -4640 1756 1587 1020 133 13 0 chrX 105254477 105254627 -57345303 - AluSg/x SINE Alu -12 300 149 261 0 0 0 chrX 105254754 105254783 -57345147 + (TG)n Simple_repeat Simple_repeat 1 29 0 432 262 24 40 chrX 105254886 105255134 -57344796 - L1MEd LINE L1 -3668 2461 2218 1061 164 12 0 chrX 105255147 105255312 -57344618 - FAM SINE Alu -8 167 1 642 222 0 0 chrX 105255462 105255579 -57344351 - FLAM_C SINE Alu -26 117 1 543 280 79 61 chrX 105255928 105256652 -57343278 - L1MEd LINE L1 -842 1648 955 727 161 46 15 chrX 105256768 105256898 -57343032 + AluJo SINE Alu 1 134 -178 239 367 39 39 chrX 105256900 105257314 -57342616 - L1MEd LINE L1 -5286 833 420 251 235 59 0 chrX 105257870 105257921 -57342009 + L2 LINE L2 3201 3254 -18 21 0 0 0 chrX 105259401 105259422 -57340508 + AT_rich Low_complexity Low_complexity 1 21 0 6500 107 19 41 chrX 105259472 105260624 -57339306 + L1MA2 LINE L1 5167 6304 0 453 273 47 33 chrX 105260751 105260901 -57339029 + L2 LINE L2 2926 3077 -195 800 144 0 0 chrX 105261016 105261141 -57338789 - MLT1C LTR MaLR -340 127 3 464 188 31 0 chrX 105261141 105261237 -57338693 - MLT1C-int LTR MaLR 0 1371 1273 * 14781 179 28 18 chrX 105261235 105264434 -57335496 + L1MA1 LINE L1 2209 5438 -743 443 146 0 0 chrX 105264421 105264503 -57335427 + L1 LINE L1 3884 3965 -2181 * 5752 90 16 11 chrX 105264512 105265370 -57334560 + L1MA1 LINE L1 5440 6302 0 28 0 0 0 chrX 105265377 105265405 -57334525 + AT_rich Low_complexity Low_complexity 1 28 0 1946 198 33 31 chrX 105265787 105266212 -57333718 + MLT1C-int LTR MaLR 946 1371 0 2916 127 18 2 chrX 105266212 105266670 -57333260 + MLT1C LTR MaLR 3 467 0 1186 165 12 49 chrX 105268236 105268421 -57331509 - MER46A DNA MER2_type -2496 235 60 2681 7 0 0 chrX 105268421 105268718 -57331212 + AluYa5 SINE Alu 1 297 -14 1186 165 12 49 chrX 105268718 105268775 -57331155 - MER46A DNA MER2_type -2671 60 2 607 240 149 7 chrX 105270511 105270665 -57329265 - MER5A DNA MER1_type 0 189 14 314 115 0 0 chrX 105271517 105271569 -57328361 + L1MB1 LINE L1 6116 6167 -1 400 316 101 0 chrX 105271633 105271801 -57328129 + MIR SINE MIR 62 246 -16 194 214 0 14 chrX 105272541 105272550 -57327380 + (TA)n Simple_repeat Simple_repeat 1 9 -60 2032 117 11 3 chrX 105272550 105272833 -57327097 + AluSx SINE Alu 1 285 -27 194 214 0 14 chrX 105272833 105272893 -57327037 + (TA)n Simple_repeat Simple_repeat 9 69 0 22 0 0 0 chrX 105273703 105273725 -57326205 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 105274071 105274094 -57325836 + AT_rich Low_complexity Low_complexity 1 23 0 1276 270 28 37 chrX 105274642 105275102 -57324828 - L1ME3A LINE L1 -230 5940 5485 684 105 42 14 chrX 105275108 105275251 -57324679 + CT-rich Low_complexity Low_complexity 3 149 0 1488 157 60 40 chrX 105275253 105275553 -57324377 - AluJo SINE Alu 0 312 7 416 263 74 40 chrX 105275567 105275859 -57324071 - L1ME3A LINE L1 -686 5476 5177 * 1394 284 72 60 chrX 105275829 105276058 -57323872 - L1ME3A LINE L1 -1633 4513 4288 1927 99 27 10 chrX 105276058 105276351 -57323579 - L1PA13 LINE L1 0 6163 5866 1394 284 72 60 chrX 105276351 105276625 -57323305 - L1ME3A LINE L1 -1858 4288 4019 183 114 0 0 chrX 105276625 105276660 -57323270 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 1789 163 0 7 chrX 105276670 105276947 -57322983 - AluJb SINE Alu -37 275 1 1394 284 72 60 chrX 105276947 105277504 -57322426 - L1ME3A LINE L1 -2135 4011 3428 238 371 86 29 chrX 105277529 105277669 -57322261 + MIR3 SINE MIR 16 163 -45 216 234 0 0 chrX 105277723 105277770 -57322160 + MIR3 SINE MIR 154 200 -8 1960 128 31 0 chrX 105278053 105278343 -57321587 + AluSx SINE Alu 1 299 -13 2143 124 0 0 chrX 105278852 105279172 -57320758 + AluSx SINE Alu 1 312 0 681 148 25 0 chrX 105279172 105279294 -57320636 - L1MA6 LINE L1 -320 5980 5856 1807 131 48 39 chrX 105279294 105279651 -57320279 + L1MA7 LINE L1 5930 6290 -1 698 198 52 41 chrX 105279718 105279890 -57320040 + MER5B DNA MER1_type 4 177 -1 1298 156 14 116 chrX 105280915 105281142 -57318788 + L1MC4 LINE L1 7704 7880 -162 186 43 0 0 chrX 105281142 105281165 -57318765 + (TG)n Simple_repeat Simple_repeat 2 24 0 1298 156 14 116 chrX 105281165 105281308 -57318622 + L1MC4 LINE L1 7880 8036 -6 25 31 0 0 chrX 105281458 105281490 -57318440 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chrX 105281963 105281988 -57317942 + AT_rich Low_complexity Low_complexity 1 25 0 310 272 74 0 chrX 105282223 105282304 -57317626 - L2 LINE L2 0 3272 3186 799 302 40 8 chrX 105282315 105282567 -57317363 - MIR SINE MIR 0 262 3 246 317 76 49 chrX 105282750 105282974 -57316956 - L2 LINE L2 -239 3033 2804 216 185 12 25 chrX 105283252 105283333 -57316597 + (TA)n Simple_repeat Simple_repeat 2 81 0 403 219 206 27 chrX 105283343 105283489 -57316441 + L1ME4a LINE L1 5939 6110 -11 290 308 113 33 chrX 105283681 105283921 -57316009 - L2 LINE L2 -1450 1864 1606 1455 175 16 57 chrX 105284708 105285022 -57314908 + AluJo SINE Alu 1 301 -11 644 269 150 4 chrX 105285091 105285325 -57314605 + L2 LINE L2 2898 3165 -148 2142 182 57 30 chrX 105286183 105286257 -57313673 - Charlie1b DNA MER1_type -2238 523 453 2210 108 0 3 chrX 105286257 105286553 -57313377 - AluSx SINE Alu -13 299 5 2142 182 57 30 chrX 105286553 105286983 -57312947 - Charlie1b DNA MER1_type -2308 453 5 316 308 105 41 chrX 105286991 105287646 -57312284 + L1M4 LINE L1 3106 3802 -2344 294 102 0 51 chrX 105287738 105287797 -57312133 + L1MA1 LINE L1 6240 6295 -7 375 305 95 16 chrX 105287868 105288118 -57311812 + L1M4c LINE L1 2268 2536 -3846 1205 158 30 113 chrX 105288128 105288456 -57311474 - AluJb SINE Alu -11 301 1 742 204 15 0 chrX 105288459 105288596 -57311334 + MER5A DNA MER1_type 1 139 -50 392 309 116 25 chrX 105289255 105289540 -57310390 + L1M4c LINE L1 2548 2858 -3524 2113 95 20 16 chrX 105289623 105289928 -57310002 + AluSx SINE Alu 1 306 -6 330 266 91 41 chrX 105290283 105290647 -57309283 + L1M4c LINE L1 3117 3498 -2884 419 273 189 42 chrX 105291154 105291570 -57308360 - L2 LINE L2 0 3313 2795 980 240 23 9 chrX 105291570 105291791 -57308139 + MER58A DNA MER1_type 1 224 0 419 273 189 42 chrX 105291791 105291909 -57308021 - L2 LINE L2 -518 2795 2696 610 241 14 63 chrX 105291917 105292124 -57307806 + L1ME3 LINE L1 5964 6160 -2 620 297 41 50 chrX 105292255 105292595 -57307335 + L1ME LINE L1 5469 5805 -316 233 240 27 27 chrX 105295553 105295628 -57304302 - L2 LINE L2 -2 3311 3237 756 274 48 39 chrX 105295753 105296063 -57303867 - L2 LINE L2 -182 3131 2819 1284 138 24 5 chrX 105296251 105296461 -57303469 - MER20 DNA MER1_type 0 219 6 181 346 39 0 chrX 105296482 105296534 -57303396 + L2 LINE L2 3149 3202 -70 407 248 55 0 chrX 105296677 105296786 -57303144 + L2 LINE L2 3199 3313 0 572 227 53 0 chrX 105297500 105297632 -57302298 + MIR SINE MIR 124 262 0 368 275 7 67 chrX 105297664 105297716 -57302214 - MIR3 SINE MIR -4 204 150 970 217 32 16 chrX 105297716 105297965 -57301965 - MER112 DNA MER1_type -2 254 2 368 275 7 67 chrX 105297965 105298061 -57301869 - MIR3 SINE MIR -58 150 65 3851 151 47 1 chrX 105298982 105299689 -57300241 - L1MB7 LINE L1 -1 6183 5445 5244 239 48 44 chrX 105299694 105299829 -57300101 - L1MB7 LINE L1 -896 5250 5117 1957 97 13 13 chrX 105299829 105300070 -57299860 - L1MA3 LINE L1 0 6305 6062 1797 164 7 0 chrX 105300070 105300375 -57299555 - AluSx SINE Alu -5 307 1 1957 97 13 13 chrX 105300375 105300432 -57299498 - L1MA3 LINE L1 -242 6063 6007 5244 239 48 44 chrX 105300432 105301853 -57298077 - L1MB7 LINE L1 -1029 5117 3685 2371 99 0 3 chrX 105301853 105302166 -57297764 - AluSq SINE Alu -1 312 1 5244 239 48 44 chrX 105302166 105302388 -57297542 - L1MB7 LINE L1 -2461 3685 3465 5786 158 48 143 chrX 105303163 105303853 -57296077 + L1MC4a LINE L1 6171 6925 -883 441 263 32 19 chrX 105303853 105304009 -57295921 + MER58C DNA MER1_type 56 213 -2 5786 158 48 143 chrX 105304009 105304972 -57294958 + L1MC4a LINE L1 6925 7807 -1 395 250 42 42 chrX 105304974 105305094 -57294836 + MER5B DNA MER1_type 50 169 -9 926 200 50 0 chrX 105305110 105305290 -57294640 + MER5A DNA MER1_type 1 189 0 279 232 207 0 chrX 105305453 105305535 -57294395 - L2 LINE L2 -4 3309 3211 189 336 0 50 chrX 105307457 105307576 -57292354 + L2 LINE L2 3184 3296 -17 31 0 0 0 chrX 105307689 105307720 -57292210 + AT_rich Low_complexity Low_complexity 1 31 0 277 61 84 46 chrX 105308758 105308889 -57291041 + (TA)n Simple_repeat Simple_repeat 1 136 0 41 21 0 0 chrX 105309002 105309050 -57290880 + AT_rich Low_complexity Low_complexity 1 48 0 215 125 12 38 chrX 105309050 105309130 -57290800 + (TAA)n Simple_repeat Simple_repeat 3 80 0 619 12 88 35 chrX 105309131 105309301 -57290629 + (TA)n Simple_repeat Simple_repeat 1 179 0 3948 195 33 36 chrX 105309962 105311678 -57288252 - L1ME1 LINE L1 -8 6158 4458 2095 168 96 26 chrX 105311823 105312292 -57287638 - MLT1D LTR MaLR 0 505 4 678 302 42 5 chrX 105312966 105313178 -57286752 + MIR SINE MIR 7 226 -36 281 209 67 76 chrX 105313229 105313334 -57286596 - MER103 DNA DNA -51 115 12 183 42 0 0 chrX 105313416 105313440 -57286490 + (TTCTC)n Simple_repeat Simple_repeat 1 24 0 339 85 0 0 chrX 105313440 105313487 -57286443 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2107 114 3 0 chrX 105313491 105313781 -57286149 - AluSx SINE Alu -21 291 1 203 0 37 0 chrX 105314535 105314562 -57285368 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1023 180 0 0 chrX 105314891 105315058 -57284872 - FRAM SINE Alu -11 165 1 21 0 0 0 chrX 105315435 105315456 -57284474 + AT_rich Low_complexity Low_complexity 1 21 0 413 345 124 21 chrX 105316066 105316458 -57283472 - L2 LINE L2 -7 3265 2589 660 221 50 22 chrX 105316684 105316865 -57283065 + MER5A DNA MER1_type 1 186 -3 6015 166 31 100 chrX 105316876 105318049 -57281881 + Charlie1a DNA MER1_type 1 1254 -1507 4570 23 6 0 chrX 105318049 105318580 -57281350 + L1PA5 LINE L1 5616 6149 -5 6015 166 31 100 chrX 105318580 105318813 -57281117 + Charlie1a DNA MER1_type 1254 1290 -1471 1912 104 56 0 chrX 105318813 105319081 -57280849 - AluY SINE Alu -28 283 1 6015 166 31 100 chrX 105319081 105319237 -57280693 + Charlie1a DNA MER1_type 1290 1455 0 320 152 61 0 chrX 105319772 105319838 -57280092 - MSTB1 LTR MaLR 0 432 363 28 61 0 0 chrX 105320660 105320709 -57279221 + AT_rich Low_complexity Low_complexity 1 49 0 258 235 0 0 chrX 105320747 105320798 -57279132 + L2 LINE L2 3259 3309 -4 310 276 41 20 chrX 105322228 105322326 -57277604 + L2 LINE L2 3168 3267 -5 2886 130 113 0 chrX 105322810 105323340 -57276590 + L1MA4 LINE L1 5700 6289 -11 1881 160 7 3 chrX 105323946 105324246 -57275684 + AluJb SINE Alu 1 301 -11 521 98 24 0 chrX 105324328 105324410 -57275520 - HY1 scRNA scRNA -1 111 28 504 189 220 15 chrX 105324462 105324594 -57275336 - MER63 DNA MER1_type -273 789 5 625 225 154 6 chrX 105324663 105324832 -57275098 + MIR SINE MIR 3 196 -66 11376 157 199 2 chrX 105325340 105327479 -57272451 + L1M1 LINE L1 22 2582 -4983 425 95 16 0 chrX 105327475 105327538 -57272392 + L1M1 LINE L1 3091 3154 -4411 * 487 142 47 9 chrX 105327643 105327749 -57272181 - FLAM_C SINE Alu -33 110 1 1165 234 141 37 chrX 105328243 105328804 -57271126 - L1ME4a LINE L1 -18 6103 5485 1014 172 0 6 chrX 105328820 105328994 -57270936 + FRAM SINE Alu 1 170 -6 435 265 51 13 chrX 105329053 105329287 -57270643 - L1ME4a LINE L1 -761 5385 5143 35 0 0 0 chrX 105329344 105329379 -57270551 + AT_rich Low_complexity Low_complexity 1 35 0 377 313 58 30 chrX 105329684 105330077 -57269853 - L1ME4a LINE L1 -1652 4494 4091 2178 114 10 0 chrX 105330077 105330385 -57269545 - AluSx SINE Alu -1 311 1 16871 186 16 9 chrX 105330385 105331202 -57268728 - L1PA15 LINE L1 -43 6773 5963 2367 96 0 0 chrX 105331202 105331505 -57268425 - AluY SINE Alu -8 303 1 16871 186 16 9 chrX 105331505 105333274 -57266656 - L1PA15 LINE L1 -853 5963 4207 414 0 0 0 chrX 105333274 105333320 -57266610 + (TG)n Simple_repeat Simple_repeat 2 47 0 16871 186 16 9 chrX 105333320 105335237 -57264693 - L1PA15 LINE L1 -2609 4207 2234 4149 188 26 36 chrX 105335242 105336095 -57263835 - L1PA15 LINE L1 -4713 2074 1231 368 280 17 8 chrX 105336106 105336224 -57263706 - L1PA12 LINE L1 -5250 2331 2213 435 299 41 8 chrX 105337200 105337431 -57262499 - L1PA12 LINE L1 -6994 591 1 2287 92 10 0 chrX 105337444 105337739 -57262191 - AluSx SINE Alu -4 308 11 428 262 71 30 chrX 105337793 105337961 -57261969 - L1M4 LINE L1 -2853 3293 3119 25 75 0 0 chrX 105338313 105338366 -57261564 + AT_rich Low_complexity Low_complexity 1 53 0 570 262 138 19 chrX 105340220 105340430 -57259500 - MIR SINE MIR 0 262 28 691 247 46 23 chrX 105341934 105342108 -57257822 - MIR3 SINE MIR -16 192 15 25 51 0 0 chrX 105342621 105342660 -57257270 + AT_rich Low_complexity Low_complexity 1 39 0 352 308 51 13 chrX 105342738 105342894 -57257036 - L1ME4a LINE L1 -123 5998 5837 2297 91 3 0 chrX 105342963 105343261 -57256669 - AluSx SINE Alu -13 299 1 22 35 0 0 chrX 105343897 105343926 -57256004 + AT_rich Low_complexity Low_complexity 1 29 0 253 349 0 0 chrX 105344026 105344092 -57255838 - L2 LINE L2 -3 3269 3204 381 315 115 0 chrX 105344717 105344847 -57255083 + MIR SINE MIR 20 164 -98 2118 142 103 3 chrX 105345354 105345741 -57254189 + MSTB LTR MaLR 1 426 0 254 305 0 17 chrX 105345938 105345997 -57253933 + L2 LINE L2 3210 3267 -5 233 315 8 62 chrX 105346444 105346574 -57253356 - MIR3 SINE MIR -9 199 77 476 320 34 17 chrX 105346699 105346877 -57253053 - MIR SINE MIR -56 206 26 727 245 89 42 chrX 105348404 105348641 -57251289 - MIR SINE MIR -13 249 2 568 168 62 0 chrX 105349804 105349924 -57250006 - L1MA9 LINE L1 -126 6063 5932 * 960 130 242 0 chrX 105349921 105350000 -57249930 + L1MA9 LINE L1 6046 6105 -207 378 0 0 0 chrX 105350000 105350042 -57249888 + (CA)n Simple_repeat Simple_repeat 2 43 0 960 130 242 0 chrX 105350042 105350177 -57249753 + L1MA9 LINE L1 6105 6312 0 2324 155 4 57 chrX 105351164 105351424 -57248506 - Tigger2a DNA MER2_type -2274 434 207 1797 133 8 0 chrX 105351424 105351688 -57248242 - AluJb SINE Alu -31 281 16 2324 155 4 57 chrX 105351688 105351885 -57248045 - Tigger2a DNA MER2_type -2501 207 1 760 253 12 0 chrX 105354690 105354856 -57245074 - L2 LINE L2 -706 2608 2441 2411 245 95 18 chrX 105354856 105355574 -57244356 - L2 LINE L2 -1589 1725 953 320 206 29 125 chrX 105355808 105355944 -57243986 + L1ME4a LINE L1 5998 6120 -1 193 114 29 0 chrX 105356587 105356622 -57243308 - L2 LINE L2 -3 3310 3275 40671 66 7 8 chrX 105357514 105363671 -57236259 + L1PA6 LINE L1 2 6151 -3 23 0 0 0 chrX 105363676 105363699 -57236231 + AT_rich Low_complexity Low_complexity 1 23 0 2085 120 32 42 chrX 105414317 105414685 -57185245 - L1M4c LINE L1 -4102 2282 1917 2217 114 7 0 chrX 105414685 105414991 -57184939 - AluSq SINE Alu -5 308 1 2085 120 32 42 chrX 105414991 105415054 -57184876 - L1M4c LINE L1 -4467 1917 1855 7503 159 35 5 chrX 105415058 105416501 -57183429 - L1M4c LINE L1 -4870 1514 28 730 182 23 0 chrX 105417771 105417903 -57182027 - LTR12 LTR ERV1 -225 489 355 319 206 0 0 chrX 105417903 105417976 -57181954 - LTR30 LTR ERV1 -102 620 548 916 142 150 43 chrX 105417976 105418230 -57181700 - LTR12 LTR ERV1 -433 281 1 305 302 17 43 chrX 105418375 105418491 -57181439 + MIR SINE MIR 3 115 -147 238 163 23 0 chrX 105418520 105418563 -57181367 + L2 LINE L2 3216 3259 -13 1056 269 12 8 chrX 105419064 105419309 -57180621 - MIR SINE MIR -15 247 2 291 188 83 10 chrX 105419772 105419868 -57180062 + L1ME4a LINE L1 6017 6119 -2 2015 153 0 6 chrX 105419879 105420193 -57179737 + AluJb SINE Alu 1 312 0 318 64 21 0 chrX 105420955 105421002 -57178928 - L1PB3 LINE L1 -8 6146 6099 201 344 47 52 chrX 105421468 105421660 -57178270 + L2 LINE L2 2783 2973 -341 209 33 33 0 chrX 105422972 105423002 -57176928 + (TC)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chrX 105424172 105424199 -57175731 + (TG)n Simple_repeat Simple_repeat 2 28 0 190 246 70 0 chrX 105425452 105425509 -57174421 - MIR3 SINE MIR -144 64 4 2158 91 4 0 chrX 105425603 105425877 -57174053 - AluSp SINE Alu -38 275 1 336 150 0 0 chrX 105426005 105426065 -57173865 + FLAM_A SINE Alu 74 133 0 248 180 0 20 chrX 105426070 105426120 -57173810 + L2 LINE L2 3257 3305 -8 1975 159 24 0 chrX 105427223 105427556 -57172374 + MER7A DNA MER2_type 8 346 0 188 200 0 0 chrX 105427559 105427594 -57172336 - L2 LINE L2 -24 3289 3255 2633 61 0 0 chrX 105427693 105428003 -57171927 - AluSg SINE Alu 0 310 1 1823 132 38 14 chrX 105428050 105428338 -57171592 + AluJo SINE Alu 1 295 -17 2333 276 53 42 chrX 105428635 105429617 -57170313 + L1M4b LINE L1 11 1224 -5635 2422 248 86 29 chrX 105430079 105431419 -57168511 + L1M4b LINE L1 1190 2723 -4415 292 275 25 8 chrX 105431656 105431776 -57168154 + L1M4b LINE L1 2878 2999 -3960 509 184 0 0 chrX 105431789 105431898 -57168032 - L1M4 LINE L1 -3561 2585 2477 381 80 40 0 chrX 105432032 105432107 -57167823 + (TA)n Simple_repeat Simple_repeat 1 78 0 2069 209 17 25 chrX 105432107 105432697 -57167233 + L1M4b LINE L1 3269 3853 -3104 1421 128 31 0 chrX 105432697 105432893 -57167037 + AluJo SINE Alu 1 202 -110 2493 158 52 70 chrX 105432893 105433546 -57166384 + L1MB8 LINE L1 5538 6178 0 180 250 154 0 chrX 105433609 105433661 -57166269 + L2 LINE L2 3254 3313 0 405 0 0 0 chrX 105434179 105434224 -57165706 + (CA)n Simple_repeat Simple_repeat 2 46 0 686 235 135 5 chrX 105434390 105434590 -57165340 + MIR SINE MIR 33 258 -4 340 338 114 15 chrX 105434621 105434822 -57165108 - L2 LINE L2 -527 2787 2567 547 302 133 7 chrX 105434866 105435167 -57164763 - L2 LINE L2 -902 2412 2074 391 62 16 16 chrX 105438203 105438267 -57161663 + (TC)n Simple_repeat Simple_repeat 1 64 0 295 223 89 18 chrX 105438770 105438882 -57161048 + L1ME4a LINE L1 6001 6120 -1 422 341 59 35 chrX 105440439 105440811 -57159119 + L2 LINE L2 2596 2976 -338 1625 265 125 38 chrX 105440938 105441797 -57158133 + L2 LINE L2 2260 3169 -144 315 210 198 0 chrX 105441796 105441877 -57158053 - L2 LINE L2 -5 3308 3212 * 390 304 43 9 chrX 105441874 105441989 -57157941 + L2 LINE L2 3136 3254 -18 246 247 0 55 chrX 105441999 105442072 -57157858 + L2 LINE L2 3227 3295 -18 214 294 46 28 chrX 105443236 105443345 -57156585 - L2 LINE L2 -219 3053 2943 586 257 58 18 chrX 105443951 105444122 -57155808 - MIR SINE MIR -83 179 2 274 263 144 25 chrX 105444198 105444316 -57155614 - L3b LINE CR1 -131 1452 1321 2752 19 7 3 chrX 105444632 105444940 -57154990 - L1PA2 LINE L1 -4 6151 5843 2562 37 7 0 chrX 105445041 105445336 -57154594 - AluY SINE Alu -14 297 1 290 333 31 39 chrX 105446555 105446684 -57153246 + L2 LINE L2 3128 3255 -17 212 236 167 14 chrX 105447371 105447443 -57152487 + MIR SINE MIR 59 141 -67 334 257 31 51 chrX 105448256 105448417 -57151513 + MIR SINE MIR 34 201 -54 274 309 121 48 chrX 105448657 105449055 -57150875 - L2 LINE L2 -2 3311 2885 21 36 0 0 chrX 105449924 105449952 -57149978 + AT_rich Low_complexity Low_complexity 1 28 0 1106 164 0 0 chrX 105452420 105452585 -57147345 - FRAM SINE Alu -1 165 1 360 0 0 0 chrX 105452590 105452630 -57147300 + (TG)n Simple_repeat Simple_repeat 1 40 0 440 129 0 0 chrX 105452630 105452692 -57147238 - FRAM/FAM SINE Alu -116 60 1 360 0 0 0 chrX 105452694 105452734 -57147196 + (TG)n Simple_repeat Simple_repeat 1 40 0 1294 123 0 54 chrX 105452734 105452938 -57146992 - AluJb SINE Alu -116 196 4 1483 326 77 36 chrX 105452953 105453506 -57146424 + L2 LINE L2 2043 2654 -618 2051 137 3 0 chrX 105453506 105453798 -57146132 - AluSq SINE Alu -20 293 1 1483 326 77 36 chrX 105453798 105454201 -57145729 + L2 LINE L2 2654 3039 -233 484 252 61 14 chrX 105454265 105454412 -57145518 - MIR SINE MIR 0 262 109 374 331 39 0 chrX 105454454 105454581 -57145349 + L2 LINE L2 3141 3272 0 207 282 14 14 chrX 105454689 105454760 -57145170 + GA-rich Low_complexity Low_complexity 1 71 0 201 68 68 0 chrX 105454766 105454810 -57145120 + (TA)n Simple_repeat Simple_repeat 2 48 0 240 305 116 0 chrX 105455110 105455205 -57144725 + L2 LINE L2 1222 1327 -1987 1127 290 95 83 chrX 105455222 105456250 -57143680 + L2 LINE L2 1712 2752 -562 471 53 0 0 chrX 105456251 105456308 -57143622 + Alu SINE Alu 1 57 -254 546 45 45 34 chrX 105456410 105456498 -57143432 + L1M4c LINE L1 2331 2419 -3965 3233 186 7 45 chrX 105456525 105457207 -57142723 + MLT1D-int LTR MaLR 6 661 -710 35294 96 11 35 chrX 105457279 105463581 -57136349 + L1PA7 LINE L1 11 6154 0 566 288 33 16 chrX 105463574 105463758 -57136172 + MLT1D-int LTR MaLR 660 846 -525 * 2188 82 44 0 chrX 105463759 105464053 -57135877 + AluSp SINE Alu 1 307 -6 1243 261 34 84 chrX 105464204 105464645 -57135285 + MLT1D-int LTR MaLR 953 1371 0 1809 172 43 75 chrX 105464665 105465106 -57134824 + MLT1D LTR MaLR 72 498 -7 396 257 0 0 chrX 105465123 105465197 -57134733 - MER119 DNA MER1_type -469 114 41 859 169 258 0 chrX 105465236 105465414 -57134516 + MER58A DNA MER1_type 1 224 0 25 75 0 0 chrX 105465919 105465972 -57133958 + AT_rich Low_complexity Low_complexity 1 53 0 310 303 97 27 chrX 105466764 105466949 -57132981 + L2 LINE L2 2885 3082 -190 781 271 84 19 chrX 105469266 105469576 -57130354 + L1ME4a LINE L1 5540 5869 -252 303 28 0 0 chrX 105469582 105469618 -57130312 + (CA)n Simple_repeat Simple_repeat 1 36 0 302 118 39 0 chrX 105471524 105471575 -57128355 + MER5B DNA MER1_type 1 53 -125 24 32 0 0 chrX 105471575 105471606 -57128324 + AT_rich Low_complexity Low_complexity 1 31 0 202 233 96 41 chrX 105471611 105471684 -57128246 + MER5A DNA MER1_type 88 164 -25 908 177 0 0 chrX 105473585 105473732 -57126198 - FRAM SINE Alu -22 154 8 601 176 34 61 chrX 105473763 105473911 -57126019 - MER103 DNA DNA -20 146 3 1612 122 30 4 chrX 105473924 105474154 -57125776 - MER46A DNA MER2_type 0 236 1 981 120 0 15 chrX 105474688 105474821 -57125109 - FLAM_C SINE Alu -2 131 1 1728 151 57 4 chrX 105474990 105475269 -57124661 + AluSx SINE Alu 1 294 -18 2411 76 3 29 chrX 105475434 105475750 -57124180 - AluSc SINE Alu -1 308 1 822 197 0 15 chrX 105475863 105476000 -57123930 + AluJo SINE Alu 2 136 -176 24 32 0 0 chrX 105477972 105478003 -57121927 + AT_rich Low_complexity Low_complexity 1 31 0 1640 146 37 7 chrX 105478047 105478341 -57121589 + L1MA4A LINE L1 6001 6303 0 494 274 48 16 chrX 105478399 105478523 -57121407 - L2 LINE L2 -2 3270 3143 564 69 0 0 chrX 105479880 105479952 -57119978 + L1PA14 LINE L1 6089 6160 -1 2329 78 10 0 chrX 105480564 105480858 -57119072 + AluSp SINE Alu 3 299 -14 1359 99 0 17 chrX 105480881 105481062 -57118868 + AluSc SINE Alu 1 178 -131 1577 211 0 3 chrX 105481162 105481470 -57118460 - AluJo SINE Alu 0 307 1 2143 118 0 0 chrX 105481504 105481792 -57118138 + AluSq SINE Alu 3 290 -23 22 0 0 0 chrX 105481792 105481814 -57118116 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chrX 105481893 105481927 -57118003 + AT_rich Low_complexity Low_complexity 1 34 0 582 276 93 108 chrX 105482053 105482332 -57117598 + L2 LINE L2 2998 3272 0 2155 116 0 7 chrX 105482537 105482829 -57117101 + AluSx SINE Alu 5 294 -18 730 304 81 72 chrX 105483709 105484054 -57115876 + L2 LINE L2 2924 3271 -1 502 307 39 7 chrX 105485536 105485689 -57114241 - HERVL40 LTR ERVL -1723 3807 3650 1520 159 10 10 chrX 105485766 105486062 -57113868 - L1MA5 LINE L1 0 6300 6005 45 89 0 18 chrX 105486261 105486430 -57113500 + AT_rich Low_complexity Low_complexity 1 166 0 375 292 66 21 chrX 105487308 105487551 -57112379 + L1ME4a LINE L1 5711 5964 -157 360 176 0 0 chrX 105487551 105487619 -57112311 + (CATA)n Simple_repeat Simple_repeat 3 70 0 889 294 99 57 chrX 105487760 105488283 -57111647 - L1MA5 LINE L1 -508 5804 5260 320 227 13 0 chrX 105488277 105488352 -57111578 - L1MC5 LINE L1 -54 7907 7832 * 1028 172 54 68 chrX 105488367 105488691 -57111239 + MLT1A2 LTR MaLR 1 365 0 246 128 0 0 chrX 105488708 105488747 -57111183 + (T)n Simple_repeat Simple_repeat 1 39 0 626 258 60 92 chrX 105488768 105488922 -57111008 - L1MC5 LINE L1 -185 7776 7619 1816 173 0 22 chrX 105488922 105489235 -57110695 - AluJb SINE Alu -6 306 1 626 258 60 92 chrX 105489235 105489403 -57110527 - L1MC5 LINE L1 -342 7619 7447 962 128 0 0 chrX 105489403 105489536 -57110394 - FLAM_C SINE Alu 0 133 1 626 258 60 92 chrX 105489536 105489746 -57110184 - L1MC5 LINE L1 -514 7447 7260 617 214 31 41 chrX 105489895 105490091 -57109839 - L1MC5 LINE L1 -771 7190 6997 1471 289 66 9 chrX 105490091 105490517 -57109413 + LTR16A LTR ERVL 1 450 0 357 115 0 0 chrX 105490558 105490610 -57109320 - U5 snRNA snRNA -64 52 1 780 246 56 20 chrX 105490613 105490808 -57109122 + HERV16 LTR ERVL 41 242 -4754 843 153 0 0 chrX 105490833 105490970 -57108960 + FRAM SINE Alu 40 176 0 3051 289 88 19 chrX 105490993 105492022 -57107908 + HERV16 LTR ERVL 469 1568 -3428 185 250 40 80 chrX 105493153 105493253 -57106677 + MIR3 SINE MIR 5 100 -108 1106 275 78 27 chrX 105493253 105493664 -57106266 - LTR16A LTR ERVL 0 450 19 336 267 67 9 chrX 105493675 105493780 -57106150 + MIR3 SINE MIR 92 202 -6 498 249 232 0 chrX 105494087 105494272 -57105658 + MIR SINE MIR 29 256 -6 661 172 80 20 chrX 105494558 105494709 -57105221 + MER5A DNA MER1_type 26 185 -4 525 127 0 53 chrX 105495038 105495182 -57104748 + MER5A DNA MER1_type 1 189 0 2253 87 0 14 chrX 105495223 105495544 -57104386 + AluY SINE Alu 1 317 0 1037 123 13 13 chrX 105495545 105495699 -57104231 + AluJb SINE Alu 135 288 -24 289 240 13 13 chrX 105497270 105497345 -57102585 + L1ME2 LINE L1 6071 6145 -19 301 234 88 98 chrX 105497396 105497448 -57102482 + L1MC4 LINE L1 7835 7886 -156 6604 27 1 8 chrX 105497448 105498227 -57101703 + L1PA5 LINE L1 5409 6182 0 301 234 88 98 chrX 105498227 105498378 -57101552 + L1MC4 LINE L1 7886 8037 -5 2271 337 52 24 chrX 105498379 105499827 -57100103 + HERV16 LTR ERVL 2254 3742 -1743 427 293 20 14 chrX 105499854 105500001 -57099929 + LTR16A LTR ERVL 282 429 -21 633 98 36 9 chrX 105500239 105500351 -57099579 - L1MA5 LINE L1 -234 6066 5952 298 325 172 0 chrX 105500354 105500557 -57099373 + L2 LINE L2 2612 2849 -465 1249 107 10 15 chrX 105500610 105500807 -57099123 - L1MA5 LINE L1 -357 5943 5748 441 266 122 14 chrX 105500808 105500947 -57098983 - HERVL40 LTR ERVL -1867 3663 3510 587 244 92 37 chrX 105500947 105501164 -57098766 - HERVL40 LTR ERVL -3193 2337 2109 198 0 0 0 chrX 105501337 105501359 -57098571 + (T)n Simple_repeat Simple_repeat 1 22 0 256 185 37 99 chrX 105501497 105501578 -57098352 - HERVL40 LTR ERVL -4357 1173 1098 837 246 127 9 chrX 105501997 105502217 -57097713 - REP3 LTR ERV -316 246 1 349 314 80 0 chrX 105502451 105502588 -57097342 + L2 LINE L2 2600 2747 -567 8811 65 1 2 chrX 105502704 105503888 -57096042 + L1P1 LINE L1 4260 5442 -713 2143 90 7 10 chrX 105504037 105504326 -57095604 - AluSg SINE Alu -22 288 1 2351 95 3 13 chrX 105505910 105506226 -57093704 + AluSp SINE Alu 1 313 0 699 205 6 12 chrX 105506680 105506841 -57093089 - L1ME4a LINE L1 -3 6118 5959 352 258 60 46 chrX 105507634 105507785 -57092145 + L1MC5 LINE L1 7765 7917 -44 531 0 0 0 chrX 105507785 105507844 -57092086 + (GA)n Simple_repeat Simple_repeat 2 60 0 187 306 99 58 chrX 105508563 105508684 -57091246 + MIR SINE MIR 51 176 -86 2406 73 0 3 chrX 105508732 105509032 -57090898 + AluSg SINE Alu 1 299 -11 303 269 0 0 chrX 105509436 105509544 -57090386 + (TG)n Simple_repeat Simple_repeat 2 109 0 1853 162 22 22 chrX 105509626 105509947 -57089983 - MLT1A1 LTR MaLR 0 365 45 631 145 31 19 chrX 105509949 105510138 -57089792 - MSTB1 LTR MaLR -2 455 193 852 181 47 0 chrX 105510138 105510287 -57089643 - AluSg/x SINE Alu -19 293 138 1009 130 33 88 chrX 105510287 105510422 -57089508 - MSTB1 LTR MaLR -229 203 83 2347 149 91 8 chrX 105510422 105510817 -57089113 + MSTA LTR MaLR 1 428 0 1009 130 33 88 chrX 105510817 105510896 -57089034 - MSTB1 LTR MaLR -349 83 1 3667 190 87 18 chrX 105510896 105511712 -57088218 - MSTB1-int LTR MaLR 0 1651 780 350 233 0 11 chrX 105511712 105511802 -57088128 - MSTB1-int LTR MaLR -999 652 564 279 237 43 11 chrX 105511826 105511919 -57088011 + LTR37B LTR ERV1 307 402 -66 2207 99 3 7 chrX 105511955 105512249 -57087681 + AluSx SINE Alu 1 293 -19 1396 153 24 40 chrX 105512430 105512679 -57087251 - AluJo SINE Alu -21 291 47 919 187 25 34 chrX 105512684 105512919 -57087011 + L1MB8 LINE L1 5946 6178 0 1517 158 21 106 chrX 105513643 105513973 -57085957 + AluJo SINE Alu 1 302 0 2772 237 89 26 chrX 105514735 105515015 -57084915 - L1ME LINE L1 -544 5618 5357 2136 117 0 32 chrX 105515015 105515324 -57084606 - AluSx SINE Alu -13 299 1 2772 237 89 26 chrX 105515324 105515437 -57084493 - L1ME LINE L1 -805 5357 5253 2024 120 3 11 chrX 105515437 105515754 -57084176 - AluSx SINE Alu 0 315 1 2772 237 89 26 chrX 105515754 105516711 -57083219 - L1ME LINE L1 -909 5253 4194 195 42 0 0 chrX 105517230 105517254 -57082676 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 17279 110 18 14 chrX 105517455 105517659 -57082271 - Tigger1 DNA MER2_type 0 2418 2216 2256 102 10 0 chrX 105517659 105517954 -57081976 + AluSq SINE Alu 1 298 -15 17279 110 18 14 chrX 105517954 105520155 -57079775 - Tigger1 DNA MER2_type -202 2216 3 1559 149 118 0 chrX 105520171 105520426 -57079504 + AluJb SINE Alu 1 285 -27 297 0 0 0 chrX 105520426 105520459 -57079471 + (CA)n Simple_repeat Simple_repeat 2 34 0 1764 149 76 0 chrX 105520831 105521106 -57078824 + AluJo SINE Alu 1 296 -16 1967 91 101 11 chrX 105522301 105522577 -57077353 - AluSg SINE Alu -9 301 1 541 223 185 0 chrX 105523148 105523305 -57076625 - MIR SINE MIR -59 203 18 1158 93 0 0 chrX 105524456 105524629 -57075301 - AluSq SINE Alu 0 306 134 1284 109 22 0 chrX 105524721 105524904 -57075026 + MLT1B LTR MaLR 202 388 -2 3467 250 79 42 chrX 105525096 105525127 -57074803 + L1MEc LINE L1 90 118 -6278 2103 134 0 6 chrX 105525127 105525441 -57074489 - AluSx SINE Alu 0 312 1 3467 250 79 42 chrX 105525441 105526923 -57073007 + L1MEc LINE L1 118 1660 -4736 * 7441 13 0 0 chrX 105526906 105527731 -57072199 + L1HS LINE L1 5329 6153 -2 631 275 57 29 chrX 105527828 105528072 -57071858 + L1ME LINE L1 14 264 -6278 1191 236 172 32 chrX 105528076 105528547 -57071383 + L1ME LINE L1 625 1161 -5381 306 0 0 0 chrX 105528570 105528604 -57071326 + (A)n Simple_repeat Simple_repeat 1 34 0 1304 193 41 73 chrX 105528607 105528949 -57070981 - MLT1A1 LTR MaLR -32 333 3 828 155 56 6 chrX 105528973 105529134 -57070796 - L1MA8 LINE L1 -3 6288 6120 5899 104 5 15 chrX 105529136 105529590 -57070340 + L1PA15 LINE L1 5325 5782 -383 2195 114 0 0 chrX 105529590 105529871 -57070059 + AluSq SINE Alu 1 281 -32 957 43 29 7 chrX 105529873 105530011 -57069919 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 5899 104 5 15 chrX 105530011 105530396 -57069534 + L1PA15 LINE L1 5783 6158 -7 32 43 0 0 chrX 105530396 105530442 -57069488 + AT_rich Low_complexity Low_complexity 1 46 0 4628 216 39 16 chrX 105530550 105530735 -57069195 + L1ME LINE L1 3355 3534 -3110 1885 163 0 19 chrX 105530735 105531048 -57068882 + AluJo SINE Alu 1 307 -5 4628 216 39 16 chrX 105531048 105532081 -57067849 + L1ME LINE L1 3534 4602 -2042 225 0 0 0 chrX 105532081 105532106 -57067824 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1879 115 0 51 chrX 105532108 105532404 -57067526 - AluSx SINE Alu -31 281 1 370 176 0 15 chrX 105532404 105532472 -57067458 + L1ME LINE L1 6077 6143 -521 528 296 3 20 chrX 105532825 105533027 -57066903 - MLT1L LTR MaLR -16 599 374 341 331 21 41 chrX 105533184 105533329 -57066601 - MLT1K LTR MaLR -445 143 2 2703 103 31 14 chrX 105534023 105534381 -57065549 - THE1B LTR MaLR 0 364 1 2121 107 24 3 chrX 105534503 105534794 -57065136 - AluSq SINE Alu -16 297 1 223 266 0 16 chrX 105535338 105535402 -57064528 + CT-rich Low_complexity Low_complexity 2 64 0 2489 185 83 5 chrX 105535418 105535970 -57063960 - L1MD3 LINE L1 0 7995 7401 2243 120 3 0 chrX 105536014 105536322 -57063608 - AluSx SINE Alu -3 309 1 22 0 0 0 chrX 105536765 105536787 -57063143 + AT_rich Low_complexity Low_complexity 1 22 0 249 157 84 72 chrX 105536979 105537062 -57062868 + MIR SINE MIR 103 186 -76 780 131 82 0 chrX 105537085 105537207 -57062723 - FLAM_C SINE Alu -10 133 2 2374 279 67 44 chrX 105537212 105537503 -57062427 - L1MEc LINE L1 -3873 2523 2240 1040 209 87 48 chrX 105537503 105537838 -57062092 - MER7A DNA MER2_type 0 346 1 2374 279 67 44 chrX 105537838 105538024 -57061906 - L1MEc LINE L1 -4156 2240 2060 1127 205 19 0 chrX 105538024 105538239 -57061691 + MER20 DNA MER1_type 1 219 0 2374 279 67 44 chrX 105538239 105538792 -57061138 - L1MEc LINE L1 -4336 2060 1449 1664 188 47 3 chrX 105538792 105539090 -57060840 - AluJb SINE Alu -1 311 1 2374 279 67 44 chrX 105539090 105539477 -57060453 - L1MEc LINE L1 -4947 1449 1072 1604 171 58 3 chrX 105539480 105539807 -57060123 - L1MB5 LINE L1 -7 6167 5823 312 258 10 10 chrX 105539808 105539905 -57060025 - L1MEc LINE L1 -5493 903 807 2536 115 71 34 chrX 105539910 105540346 -57059584 - LTR47A LTR ERVL 0 452 1 252 0 0 0 chrX 105540907 105540935 -57058995 + (TC)n Simple_repeat Simple_repeat 2 29 0 264 167 0 0 chrX 105540935 105540983 -57058947 + (TA)n Simple_repeat Simple_repeat 2 49 0 287 200 50 0 chrX 105541091 105541151 -57058779 - L2 LINE L2 0 3313 3251 1333 261 162 28 chrX 105541159 105541726 -57058204 - L2 LINE L2 -858 2456 1814 1061 270 32 14 chrX 105541823 105542101 -57057829 + MER70B LTR ERVL 168 450 -128 325 226 142 9 chrX 105542197 105542303 -57057627 - L2 LINE L2 -1509 1805 1686 302 311 132 0 chrX 105542690 105542796 -57057134 - L2 LINE L2 0 3313 3194 720 87 19 0 chrX 105542796 105542900 -57057030 - AluSx SINE Alu -13 297 192 1203 64 0 0 chrX 105542901 105543042 -57056888 - AluSx SINE Alu -172 141 1 586 274 95 68 chrX 105543042 105543477 -57056453 - L2 LINE L2 -103 3210 2771 2723 22 28 0 chrX 105543540 105543857 -57056073 - LTR17 LTR ERV1 -454 326 1 14608 41 1 0 chrX 105543857 105545580 -57054350 - HERV17 LTR ERV1 0 8626 6902 5942 41 6 1 chrX 105545571 105546281 -57053649 - HERV17 LTR ERV1 -3559 5067 4355 * 3166 159 92 20 chrX 105546282 105546727 -57053203 - L1MB5 LINE L1 -39 6135 5623 2531 65 0 0 chrX 105546727 105547033 -57052897 - AluY SINE Alu -5 306 1 3166 159 92 20 chrX 105547033 105547271 -57052659 - L1MB5 LINE L1 -551 5623 5403 393 208 0 0 chrX 105547269 105547346 -57052584 - L1MB5 LINE L1 -1064 5082 5006 * 359 197 0 0 chrX 105547348 105547414 -57052516 + L1M4 LINE L1 4019 4084 -2062 * 4130 241 57 22 chrX 105547413 105548290 -57051640 - L1MB5 LINE L1 -2103 4043 3101 1586 177 45 28 chrX 105548290 105548578 -57051352 - AluJo SINE Alu -19 293 1 4130 241 57 22 chrX 105548578 105549061 -57050869 - L1MB5 LINE L1 -3045 3101 2636 1357 146 29 0 chrX 105549094 105549421 -57050509 + L1M2 LINE L1 5101 5440 -743 2470 75 3 0 chrX 105549421 105549727 -57050203 + AluSq SINE Alu 1 307 -6 643 246 131 6 chrX 105549763 105549946 -57049984 - MIR SINE MIR -2 260 55 237 286 0 92 chrX 105549946 105550044 -57049886 - MIR SINE MIR -173 89 1 734 206 82 5 chrX 105550119 105550313 -57049617 - MLT1A1 LTR MaLR -13 352 144 699 181 42 7 chrX 105550538 105550682 -57049248 - MLT1A1 LTR MaLR -216 149 1 1520 85 0 9 chrX 105550695 105550906 -57049024 + L1PA10 LINE L1 5939 6147 -21 204 40 0 0 chrX 105550906 105550931 -57048999 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 864 273 87 14 chrX 105550964 105551309 -57048621 - L1MC/D LINE L1 -2004 5804 5435 4793 184 69 14 chrX 105551309 105551684 -57048246 + L1MC4a LINE L1 6677 7030 -778 1231 183 35 120 chrX 105551684 105552083 -57047847 + MLT1A1 LTR MaLR 1 365 0 4793 184 69 14 chrX 105552083 105552775 -57047155 + L1MC4a LINE L1 7030 7803 -5 749 178 0 0 chrX 105553024 105553153 -57046777 - FLAM_C SINE Alu -4 129 1 1573 206 54 13 chrX 105553334 105553722 -57046208 - L1ME1 LINE L1 -21 6145 5742 32 57 0 0 chrX 105554024 105554077 -57045853 + AT_rich Low_complexity Low_complexity 1 53 0 446 235 59 59 chrX 105554209 105554430 -57045500 - L1MC4a LINE L1 -155 5966 5744 1743 144 23 40 chrX 105554444 105554790 -57045140 - L1MB8 LINE L1 -9 6169 5830 4916 245 66 10 chrX 105554790 105555353 -57044577 - L1MEc LINE L1 -2522 3860 3330 2413 85 0 7 chrX 105555353 105555660 -57044270 - AluY SINE Alu -4 307 3 4916 245 66 10 chrX 105555660 105555814 -57044116 - L1MEc LINE L1 -3052 3330 3186 783 125 0 76 chrX 105555814 105555958 -57043972 - FLAM_C SINE Alu 0 133 1 4916 245 66 10 chrX 105555958 105557130 -57042800 - L1MEc LINE L1 -3196 3186 1900 1664 269 69 12 chrX 105557296 105557953 -57041977 - L1M3b LINE L1 -4543 1770 1160 398 210 188 7 chrX 105557953 105558091 -57041839 - MIR SINE MIR -99 163 1 2201 120 0 0 chrX 105560865 105561164 -57038766 - AluSx SINE Alu -13 299 1 2453 281 110 28 chrX 105561204 105562154 -57037776 + HAL1 LINE L1 11 1044 -1463 1549 126 21 123 chrX 105562154 105562479 -57037451 + AluJo SINE Alu 6 297 -15 2453 281 110 28 chrX 105562479 105562504 -57037426 + HAL1 LINE L1 1044 1066 -1441 624 228 82 35 chrX 105562561 105562816 -57037114 + L1MB1 LINE L1 2202 2468 -3916 * 7806 133 19 83 chrX 105562809 105565677 -57034253 + L1MA5A LINE L1 3626 6293 -4 23 33 0 0 chrX 105565678 105565708 -57034222 + AT_rich Low_complexity Low_complexity 1 30 0 5362 164 33 11 chrX 105565928 105567445 -57032485 + L1MB1 LINE L1 4479 6043 -361 1950 146 0 4 chrX 105567445 105567777 -57032153 + AluSg SINE Alu 1 331 0 5362 164 33 11 chrX 105567777 105568124 -57031806 + L1MB1 LINE L1 6043 6381 -23 2332 82 0 3 chrX 105568551 105568842 -57031088 - AluSq SINE Alu -23 290 1 333 0 0 0 chrX 105568983 105569020 -57030910 + (CA)n Simple_repeat Simple_repeat 2 38 0 1187 155 45 47 chrX 105569218 105569977 -57029953 - L1MC3 LINE L1 -2 7783 6877 505 165 0 11 chrX 105570042 105570133 -57029797 - L1MC3 LINE L1 -823 6962 6873 7579 186 34 68 chrX 105570198 105571706 -57028224 - L1MC3 LINE L1 -749 5677 5926 2073 122 3 7 chrX 105571706 105572031 -57027899 + AluSx SINE Alu 1 324 0 7579 186 34 68 chrX 105572031 105574038 -57025892 - L1MC3 LINE L1 -499 5927 3852 5342 175 133 131 chrX 105574037 105576312 -57023618 - L1MC3 LINE L1 -4127 2299 19 * 875 275 96 66 chrX 105576316 105576656 -57023274 - L1ME3A LINE L1 -281 5889 5522 2051 107 0 30 chrX 105576656 105576954 -57022976 - AluSx SINE Alu 0 312 24 875 275 96 66 chrX 105576954 105577205 -57022725 - L1ME3A LINE L1 -648 5522 5280 483 288 78 18 chrX 105577201 105577635 -57022295 + L1ME2 LINE L1 5078 5536 -628 * 242 170 0 38 chrX 105577645 105577698 -57022232 + L1ME2 LINE L1 5605 5655 -515 1089 175 16 0 chrX 105577702 105577885 -57022045 + MER5A DNA MER1_type 4 189 0 516 209 130 67 chrX 105577899 105578138 -57021792 + MER112 DNA MER1_type 7 260 0 317 258 125 40 chrX 105578149 105578397 -57021533 + L1ME2 LINE L1 5666 5950 -214 2219 87 7 7 chrX 105579023 105579311 -57020619 - AluSg SINE Alu -22 288 1 259 108 0 0 chrX 105580433 105580470 -57019460 - MER96 DNA MER1_type? -3 172 136 485 247 90 60 chrX 105580481 105580856 -57019074 - L1MC5 LINE L1 -236 7725 7335 819 191 112 0 chrX 105580856 105581044 -57018886 - MER3 DNA MER1_type 0 209 1 485 247 90 60 chrX 105581044 105581081 -57018849 - L1MC5 LINE L1 -626 7335 7301 326 294 42 35 chrX 105581055 105581198 -57018732 - L1MC4 LINE L1 -547 7495 7352 * 1380 255 86 67 chrX 105581232 105581503 -57018427 - L1MC4 LINE L1 -737 7224 6960 2385 75 0 0 chrX 105581503 105581796 -57018134 + AluSg SINE Alu 1 293 -17 1380 255 86 67 chrX 105581796 105582199 -57017731 - L1MC4 LINE L1 -1001 6960 6566 2383 50 0 7 chrX 105582199 105582502 -57017428 - L1PA8 LINE L1 0 6172 5872 1380 255 86 67 chrX 105582502 105583558 -57016372 - L1MC4 LINE L1 -1395 6566 5521 1511 269 25 34 chrX 105583559 105583870 -57016060 + L1ME3 LINE L1 5076 5388 -774 851 98 8 38 chrX 105583870 105584002 -57015928 + FLAM_C SINE Alu 1 128 -5 1511 269 25 34 chrX 105584002 105584482 -57015448 + L1ME3 LINE L1 5388 5856 -306 384 322 63 19 chrX 105584552 105584757 -57015173 - L2 LINE L2 -148 3165 2952 3819 219 65 14 chrX 105584760 105585945 -57013985 + L1MB7 LINE L1 2747 3992 -2154 1970 186 164 0 chrX 105585951 105586366 -57013564 + MLT1D LTR MaLR 1 483 -22 5296 186 74 33 chrX 105586407 105586723 -57013207 + L1MB7 LINE L1 3999 4300 -1884 2177 128 0 0 chrX 105586723 105587028 -57012902 + AluSx SINE Alu 1 305 -7 5296 186 74 33 chrX 105587028 105587140 -57012790 + L1MB7 LINE L1 4300 4406 -1778 1888 161 0 13 chrX 105587140 105587444 -57012486 + AluJo SINE Alu 1 300 -12 5296 186 74 33 chrX 105587444 105588742 -57011188 + L1MB7 LINE L1 4406 5826 -358 2185 134 16 16 chrX 105588742 105589115 -57010815 + THE1C LTR MaLR 1 373 -2 5296 186 74 33 chrX 105589115 105589490 -57010440 + L1MB7 LINE L1 5826 6184 0 1120 257 83 48 chrX 105589547 105590130 -57009800 + L1ME3A LINE L1 4475 5095 -1051 2013 111 21 7 chrX 105590130 105590418 -57009512 + AluSx SINE Alu 3 294 -18 1120 257 83 48 chrX 105590418 105590631 -57009299 + L1ME3A LINE L1 5095 5299 -847 486 238 25 0 chrX 105590932 105591054 -57008876 + L1ME3A LINE L1 5320 5444 -726 342 0 0 0 chrX 105591100 105591138 -57008792 + (CA)n Simple_repeat Simple_repeat 2 39 0 875 210 50 50 chrX 105591257 105591538 -57008392 + L1MC4 LINE L1 7761 8041 -1 1768 138 3 87 chrX 105591590 105591923 -57008007 + AluSx SINE Alu 1 305 -7 1188 258 58 60 chrX 105591959 105592494 -57007436 + L1ME3A LINE L1 5428 5961 -209 276 182 40 50 chrX 105592549 105592648 -57007282 + L1ME3A LINE L1 5965 6062 -108 1708 171 125 23 chrX 105592754 105593139 -57006791 + MLT1C LTR MaLR 6 429 -38 292 83 0 42 chrX 105593170 105593218 -57006712 - MLT1B LTR MaLR 0 390 345 6265 189 37 46 chrX 105593218 105594586 -57005344 + MLT1C-int LTR MaLR 16 1371 0 1829 209 63 16 chrX 105594591 105595032 -57004898 + MLT1C LTR MaLR 6 467 0 1260 184 22 29 chrX 105595066 105595338 -57004592 + L1ME2 LINE L1 5813 6082 -82 755 169 22 109 chrX 105595361 105595544 -57004386 - MER63A DNA MER1_type -42 168 2 248 219 14 27 chrX 105595544 105595617 -57004313 + L1ME2 LINE L1 6074 6145 -19 25 65 0 0 chrX 105595909 105595955 -57003975 + AT_rich Low_complexity Low_complexity 1 46 0 1761 33 0 0 chrX 105596025 105596236 -57003694 - L1PA4 LINE L1 -2214 3932 3722 12096 28 0 0 chrX 105596239 105598436 -57001494 + L1PA4 LINE L1 3952 6149 -6 502 385 62 30 chrX 105598579 105599341 -57000589 - L2 LINE L2 -1694 1620 835 708 268 50 17 chrX 105599493 105599732 -57000198 + MIR SINE MIR 14 260 -2 553 230 8 0 chrX 105599959 105600085 -56999845 + L1M4 LINE L1 4826 4952 -1194 618 234 5 85 chrX 105600094 105600295 -56999635 + L1ME1 LINE L1 179 363 -6179 956 219 34 53 chrX 105600339 105600864 -56999066 + L1ME1 LINE L1 2305 2824 -3820 * 1469 233 34 30 chrX 105600861 105601359 -56998571 - L1M4 LINE L1 -2856 3290 2791 470 218 20 0 chrX 105601338 105601439 -56998491 - L1M4 LINE L1 -2018 4128 4026 * 848 209 47 54 chrX 105601447 105601744 -56998186 + L1ME1 LINE L1 5333 5627 -1017 5325 166 59 12 chrX 105601810 105603468 -56996462 + L1MB3 LINE L1 4442 6182 -1 4448 192 19 7 chrX 105603448 105604410 -56995520 + L1ME1 LINE L1 5642 6614 -50 * 1157 194 32 5 chrX 105604955 105605171 -56994759 - MIR SINE MIR -34 228 7 953 300 96 21 chrX 105605267 105605787 -56994143 + L2 LINE L2 2188 2746 -568 378 338 86 68 chrX 105606271 105606666 -56993264 + L2 LINE L2 2793 3189 -83 483 341 31 95 chrX 105607659 105607984 -56991946 - L2 LINE L2 -10 3262 2959 425 311 37 22 chrX 105608311 105608446 -56991484 - L2 LINE L2 -3 3269 3133 306 367 196 20 chrX 105608699 105609040 -56990890 - L2 LINE L2 -580 2734 2334 306 353 107 5 chrX 105609178 105609365 -56990565 + L1ME3A LINE L1 5963 6168 -2 205 161 0 0 chrX 105610751 105610782 -56989148 + MIR SINE MIR 4 34 -228 255 186 17 34 chrX 105610783 105610842 -56989088 + L1MC4a LINE L1 5344 5401 -2407 1435 144 141 18 chrX 105610849 105611176 -56988754 + L1MC3 LINE L1 7418 7784 -1 1179 245 101 53 chrX 105611170 105611774 -56988156 + L1MC4a LINE L1 5423 6055 -1753 * 398 256 128 15 chrX 105611951 105612084 -56987846 + MIR SINE MIR 1 148 -114 1986 157 0 0 chrX 105613594 105613894 -56986036 + AluJb SINE Alu 3 302 -10 219 340 190 0 chrX 105614272 105614372 -56985558 - MIR3 SINE MIR -48 160 42 202 87 43 0 chrX 105614974 105615020 -56984910 + A-rich Low_complexity Low_complexity 2 49 0 2471 135 28 19 chrX 105616424 105616854 -56983076 + Tigger2a DNA MER2_type 1 434 0 2674 180 86 8 chrX 105617507 105618158 -56981772 + L1MB8 LINE L1 4349 5050 -1096 2225 102 7 0 chrX 105618161 105618454 -56981476 + AluSq SINE Alu 1 295 -18 1704 180 20 6 chrX 105618459 105618803 -56981127 + L1MB8 LINE L1 5743 6091 -87 28 29 0 0 chrX 105618845 105618880 -56981050 + AT_rich Low_complexity Low_complexity 1 35 0 1027 276 65 58 chrX 105619190 105619756 -56980174 + L1ME4a LINE L1 5294 5863 -258 264 352 111 25 chrX 105619847 105620429 -56979501 - L2 LINE L2 -19 3294 2627 309 248 70 96 chrX 105620441 105620598 -56979332 + HAL1 LINE L1 22 174 -2333 3655 242 137 34 chrX 105620608 105622124 -56977806 + HAL1 LINE L1 262 1932 -575 1015 265 75 19 chrX 105622145 105622571 -56977359 + HAL1 LINE L1 2001 2450 -57 288 345 134 7 chrX 105622587 105622862 -56977068 - L2 LINE L2 -703 2611 2302 1560 184 7 7 chrX 105623886 105624174 -56975756 + AluJb SINE Alu 1 288 -24 1486 224 82 89 chrX 105624251 105624745 -56975185 - MLT1E2 LTR MaLR 0 626 130 1809 166 0 7 chrX 105624745 105625046 -56974884 - AluJb SINE Alu -13 299 1 1486 224 82 89 chrX 105625046 105625068 -56974862 - MLT1E2 LTR MaLR -496 130 109 2173 114 3 0 chrX 105625068 105625367 -56974563 + AluSg SINE Alu 1 300 -10 1486 224 82 89 chrX 105625367 105625479 -56974451 - MLT1E2 LTR MaLR -517 109 1 328 221 13 13 chrX 105625693 105625770 -56974160 + MER116 DNA Mariner 3 79 -1 1725 164 18 0 chrX 105625872 105626158 -56973772 - AluJb SINE Alu -21 291 1 1096 135 11 17 chrX 105626290 105626468 -56973462 - AluSp SINE Alu -16 297 121 347 215 14 29 chrX 105626516 105626685 -56973245 + MLT1J LTR MaLR 1 188 -323 366 230 143 97 chrX 105626714 105626931 -56972999 + MLT1J LTR MaLR 177 403 -108 198 0 0 0 chrX 105627108 105627130 -56972800 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1428 188 0 20 chrX 105627138 105627388 -56972542 + Tigger7 DNA MER2_type 1 245 -488 6314 206 74 40 chrX 105627388 105628194 -56971736 + L1MD2 LINE L1 3029 3806 -2553 2208 106 10 0 chrX 105628194 105628495 -56971435 + AluSq SINE Alu 1 304 -9 6314 206 74 40 chrX 105628495 105630905 -56969025 + L1MD2 LINE L1 3806 6358 -1 280 206 32 0 chrX 105631163 105631226 -56968704 - MLT1J2 LTR MaLR -22 428 364 26 39 0 20 chrX 105633166 105633187 -56966743 + AT_rich Low_complexity Low_complexity 1 21 -29 1941 115 40 4 chrX 105633187 105633465 -56966465 + AluSx SINE Alu 1 288 -24 26 39 0 20 chrX 105633465 105633494 -56966436 + AT_rich Low_complexity Low_complexity 21 50 0 1492 198 43 0 chrX 105634646 105634924 -56965006 - AluJo SINE Alu -22 290 1 572 278 0 23 chrX 105635722 105635855 -56964075 + MIR SINE MIR 16 145 -63 545 262 45 6 chrX 105636299 105636461 -56963469 - MIR SINE MIR -56 206 38 1432 250 62 111 chrX 105636837 105637753 -56962177 - L1MC4 LINE L1 -17 8025 7155 409 134 107 54 chrX 105637712 105637824 -56962106 + L1MB8 LINE L1 6061 6178 0 * 1576 257 102 28 chrX 105637980 105639002 -56960928 - L1MC4 LINE L1 -724 7164 5955 847 255 107 42 chrX 105639585 105640063 -56959867 + L1ME4a LINE L1 5495 6003 -118 373 275 17 25 chrX 105640879 105640999 -56958931 - MIR3 SINE MIR -1 207 89 1761 191 0 3 chrX 105641915 105642208 -56957722 - AluJo SINE Alu -20 292 1 279 0 0 0 chrX 105642925 105642956 -56956974 + (CA)n Simple_repeat Simple_repeat 1 31 0 2226 82 0 4 chrX 105643158 105643438 -56956492 + AluSg SINE Alu 1 279 -31 314 263 0 42 chrX 105643440 105643535 -56956395 + L1MC4 LINE L1 6613 6703 -1339 304 311 0 0 chrX 105643487 105643577 -56956353 - L1MC4 LINE L1 -1337 6705 6616 * 201 94 0 0 chrX 105643581 105643613 -56956317 + (TA)n Simple_repeat Simple_repeat 2 33 0 1857 168 0 16 chrX 105645095 105645405 -56954525 + AluJb SINE Alu 1 305 -7 1196 235 63 11 chrX 105645752 105646037 -56953893 + L1MD1 LINE L1 24 323 -6536 263 197 66 0 chrX 105646390 105646451 -56953479 + L1MD1 LINE L1 985 1049 -5908 334 284 57 105 chrX 105646722 105647013 -56952917 + L1MD1 LINE L1 982 1399 -5558 406 175 70 26 chrX 105647063 105647177 -56952753 + L1MD1 LINE L1 1403 1521 -5439 42735 33 23 2 chrX 105647177 105653228 -56946702 + L1PA2 LINE L1 2 6155 0 4344 212 71 83 chrX 105653246 105654161 -56945769 + L1MD1 LINE L1 1483 2407 -4550 1887 145 84 0 chrX 105654161 105654472 -56945458 - MER1B DNA MER1_type 0 337 1 4344 212 71 83 chrX 105654472 105656228 -56943702 + L1MD1 LINE L1 2407 4182 -2775 2334 53 0 4 chrX 105656228 105656557 -56943373 + AluY SINE Alu 1 328 0 1096 120 0 36 chrX 105656558 105656725 -56943205 + AluSg/x SINE Alu 133 293 -19 4344 212 71 83 chrX 105656725 105657178 -56942752 + L1MD1 LINE L1 4181 4744 -2213 * 5468 173 19 16 chrX 105657174 105658563 -56941367 + L1MD1 LINE L1 5661 7053 0 782 281 8 56 chrX 105658593 105658842 -56941088 + MIR SINE MIR 26 262 0 241 224 0 0 chrX 105659134 105659183 -56940747 + (TGG)n Simple_repeat Simple_repeat 1 49 0 352 271 21 29 chrX 105659403 105659543 -56940387 + L1 LINE L1 3433 3571 -2575 411 275 48 34 chrX 105659558 105659765 -56940165 - L1ME LINE L1 -422 5699 5490 21 0 0 0 chrX 105661216 105661237 -56938693 + AT_rich Low_complexity Low_complexity 1 21 0 286 123 13 3 chrX 105661337 105661565 -56938365 + AluSx SINE Alu 1 300 -1 2345 94 0 0 chrX 105661823 105662121 -56937809 - AluY SINE Alu -13 298 1 2748 110 0 0 chrX 105662772 105663136 -56936794 - THE1B LTR MaLR 0 364 1 1688 182 3 20 chrX 105663451 105663747 -56936183 + AluJo SINE Alu 1 291 -21 472 250 16 0 chrX 105664648 105664862 -56935068 + L1MB7 LINE L1 5917 6171 -13 247 339 45 18 chrX 105664887 105664999 -56934931 - MIR SINE MIR -58 150 36 648 140 0 0 chrX 105665439 105665546 -56934384 + (TC)n Simple_repeat Simple_repeat 2 108 0 1997 152 0 13 chrX 105665546 105665862 -56934068 - AluJb SINE Alu 0 312 1 2069 242 44 69 chrX 105666861 105667745 -56932185 + L1M4b LINE L1 3 937 -5922 2047 126 16 52 chrX 105667745 105668126 -56931804 + L1MB7 LINE L1 5818 6184 0 2396 216 53 5 chrX 105668129 105668764 -56931166 + L1 LINE L1 3889 4554 -1592 700 247 68 34 chrX 105668765 105669000 -56930930 + MLT1E2 LTR MaLR 1 243 -383 3429 167 98 18 chrX 105669007 105669738 -56930192 + L1MB8 LINE L1 5362 6151 -27 191 182 30 106 chrX 105669873 105669939 -56929991 + L2 LINE L2 3245 3305 -8 1841 114 7 11 chrX 105670256 105670529 -56929401 + AluSc SINE Alu 34 305 -4 315 300 36 36 chrX 105670552 105670692 -56929238 - L1M LINE L1 -694 5427 5288 22 0 0 0 chrX 105670692 105670714 -56929216 + AT_rich Low_complexity Low_complexity 1 22 0 2779 179 86 6 chrX 105670714 105671250 -56928680 - L1PB4 LINE L1 -42 6114 5536 1495 229 32 90 chrX 105671444 105672042 -56927888 + L1MC4a LINE L1 5369 5931 -1877 2053 106 13 13 chrX 105672323 105672624 -56927306 - AluSx SINE Alu -11 301 1 26 88 0 0 chrX 105672861 105672929 -56927001 + AT_rich Low_complexity Low_complexity 1 68 0 394 284 54 73 chrX 105672992 105673401 -56926529 - L1M4 LINE L1 -1483 4663 4263 875 152 101 17 chrX 105673622 105673800 -56926130 - MER20 DNA MER1_type -26 193 1 353 328 78 25 chrX 105673948 105674152 -56925778 + L1 LINE L1 4697 4911 -1235 1711 173 18 0 chrX 105674325 105674602 -56925328 + AluJo SINE Alu 1 282 -30 2757 219 58 49 chrX 105674622 105674726 -56925204 + L1MD1 LINE L1 18 120 -6420 828 139 0 44 chrX 105674726 105674863 -56925067 + FLAM_C SINE Alu 3 133 0 2757 219 58 49 chrX 105674863 105675696 -56924234 + L1MD1 LINE L1 120 944 -5596 578 14 0 14 chrX 105675696 105675768 -56924162 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 2757 219 58 49 chrX 105675768 105676483 -56923447 + L1MD1 LINE L1 944 1988 -4552 1261 27 0 0 chrX 105676483 105676631 -56923299 + AluY SINE Alu 159 306 -5 2939 192 57 12 chrX 105676631 105677682 -56922248 + L1MD1 LINE L1 1992 3088 -3452 685 213 67 38 chrX 105677699 105677939 -56921991 - L1MA9 LINE L1 -38 6274 6028 397 100 0 0 chrX 105677948 105678008 -56921922 - L1PB3 LINE L1 -10 6144 6085 1993 127 34 0 chrX 105678026 105678317 -56921613 + AluSx SINE Alu 1 301 -11 4779 218 89 42 chrX 105678317 105678801 -56921129 + L1MD1 LINE L1 3074 3534 -3006 2110 106 0 0 chrX 105678801 105679107 -56920823 - AluSx SINE Alu 0 306 1 4779 218 89 42 chrX 105679107 105680296 -56919634 + L1MD1 LINE L1 3534 4826 -1714 2829 161 46 19 chrX 105680423 105680903 -56919027 + L1MD1 LINE L1 5722 6224 -412 1833 137 48 0 chrX 105680903 105681023 -56918907 + AluJb SINE Alu 1 114 -330 207 0 0 0 chrX 105681023 105681046 -56918884 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1833 137 48 0 chrX 105681046 105681356 -56918574 + AluJb SINE Alu 114 444 0 2829 161 46 19 chrX 105681356 105681464 -56918466 + L1MD1 LINE L1 6224 6328 -308 315 119 45 0 chrX 105682455 105682522 -56917408 - L1MA3 LINE L1 0 6305 6236 2341 79 3 0 chrX 105682837 105683129 -56916801 + AluSg SINE Alu 1 293 -17 2133 122 0 3 chrX 105683796 105684090 -56915840 - AluJb SINE Alu -19 293 1 603 270 72 45 chrX 105685343 105685919 -56914011 + L1MEd LINE L1 938 1603 -887 1450 210 127 22 chrX 105686003 105686221 -56913709 - HsTC2 DNA Tc2 -44 1854 1660 2177 116 13 0 chrX 105686221 105686524 -56913406 - AluSx SINE Alu -5 307 1 1450 210 127 22 chrX 105686524 105686842 -56913088 - HsTC2 DNA Tc2 -238 1660 1262 430 192 92 54 chrX 105686843 105686973 -56912957 - HsTC2 DNA Tc2 -1760 138 4 229 360 30 10 chrX 105686980 105687080 -56912850 - MARNA DNA Mariner -437 149 48 27 62 0 0 chrX 105687251 105687299 -56912631 + AT_rich Low_complexity Low_complexity 1 48 0 552 306 84 37 chrX 105687737 105687833 -56912097 - L1MEc LINE L1 -3568 2647 2557 2074 107 3 58 chrX 105687833 105688159 -56911771 - AluSq SINE Alu -5 308 1 552 306 84 37 chrX 105688159 105688595 -56911335 - L1MEc LINE L1 -3658 2557 2131 21 0 0 0 chrX 105688678 105688699 -56911231 + AT_rich Low_complexity Low_complexity 1 21 0 180 196 0 43 chrX 105689223 105689269 -56910661 + MIR SINE MIR 99 142 -66 21 0 0 0 chrX 105689296 105689317 -56910613 + AT_rich Low_complexity Low_complexity 1 21 0 3111 110 72 155 chrX 105689445 105690294 -56909636 + LTR12 LTR ERV1 57 714 0 385 243 99 0 chrX 105690590 105690701 -56909229 - MIR SINE MIR -80 182 61 2256 69 0 4 chrX 105691768 105692042 -56907888 + AluSg SINE Alu 22 294 -16 210 224 0 60 chrX 105692142 105692209 -56907721 + G-rich Low_complexity Low_complexity 1 63 0 1411 163 25 11 chrX 105692591 105692868 -56907062 - L1MB4 LINE L1 0 6180 5900 235 168 53 116 chrX 105692901 105692996 -56906934 + L1ME LINE L1 5735 5823 -341 1840 156 0 32 chrX 105693055 105693363 -56906567 + AluJb SINE Alu 1 298 -14 25 31 0 0 chrX 105693803 105693835 -56906095 + AT_rich Low_complexity Low_complexity 1 32 0 636 86 9 57 chrX 105693986 105694091 -56905839 + HY3 scRNA scRNA 1 100 -1 204 40 0 0 chrX 105694091 105694116 -56905814 + (A)n Simple_repeat Simple_repeat 1 25 0 1487 150 100 25 chrX 105694123 105694403 -56905527 + AluJb SINE Alu 1 301 -11 2131 134 0 7 chrX 105694656 105694955 -56904975 - AluJb SINE Alu -15 297 1 450 17 0 0 chrX 105695454 105695512 -56904418 - L1PA3 LINE L1 -1 6154 6097 264 351 26 9 chrX 105695635 105695749 -56904181 + MIR SINE MIR 17 132 -76 181 367 50 0 chrX 105695959 105696019 -56903911 - MIR SINE MIR -6 256 194 195 219 109 16 chrX 105696030 105696094 -56903836 + MER5A DNA MER1_type 72 141 -48 41 0 0 0 chrX 105696094 105696135 -56903795 + AT_rich Low_complexity Low_complexity 1 41 0 444 205 41 0 chrX 105696135 105696306 -56903624 + (TTAAA)n Simple_repeat Simple_repeat 1 178 0 77 0 0 0 chrX 105696306 105696383 -56903547 + AT_rich Low_complexity Low_complexity 1 77 0 684 190 18 25 chrX 105696451 105696614 -56903316 - MER112 DNA MER1_type -98 162 1 1835 122 47 0 chrX 105699059 105699338 -56900592 + AluJb SINE Alu 1 292 -20 679 145 8 8 chrX 105699544 105699661 -56900269 + AluJb SINE Alu 23 139 -173 1402 105 15 0 chrX 105699661 105699861 -56900069 + AluJb SINE Alu 101 303 -9 2293 84 3 0 chrX 105699950 105700246 -56899684 - AluSx SINE Alu -15 297 1 30 0 0 0 chrX 105700677 105700707 -56899223 + AT_rich Low_complexity Low_complexity 1 30 0 1984 112 4 4 chrX 105700867 105701143 -56898787 - AluSx SINE Alu -36 276 1 239 160 20 60 chrX 105701748 105701798 -56898132 - MIR SINE MIR -186 76 29 1702 170 0 26 chrX 105701824 105702136 -56897794 - AluJb SINE Alu -8 304 1 23 33 0 0 chrX 105702828 105702858 -56897072 + AT_rich Low_complexity Low_complexity 1 30 0 1200 281 112 15 chrX 105702949 105703405 -56896525 - MARNA DNA Mariner -8 578 79 341 269 0 58 chrX 105703917 105704021 -56895909 + MER5A DNA MER1_type 91 188 -1 30 45 0 0 chrX 105706588 105706632 -56893298 + AT_rich Low_complexity Low_complexity 1 44 0 1200 114 5 0 chrX 105708259 105708452 -56891478 + L1MA8 LINE L1 6093 6286 -5 472 247 44 38 chrX 105708754 105708912 -56891018 - L2 LINE L2 0 3313 3155 32 26 0 0 chrX 105709847 105709886 -56890044 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chrX 105709937 105709957 -56889973 + (GA)n Simple_repeat Simple_repeat 1 20 0 361 216 108 0 chrX 105709957 105710059 -56889871 + L1ME4a LINE L1 5974 6086 -35 2313 87 0 7 chrX 105711210 105711508 -56888422 - AluSx SINE Alu -16 296 1 235 211 0 0 chrX 105712009 105712066 -56887864 + L1P LINE L1 5319 5375 -791 197 296 87 71 chrX 105712094 105712290 -56887640 - L2 LINE L2 -741 2573 2375 2026 122 0 11 chrX 105712297 105712684 -56887246 - AluSx SINE Alu 0 384 1 1027 197 106 0 chrX 105712734 105712942 -56886988 - AluJb SINE Alu -82 230 1 369 302 22 22 chrX 105712943 105713082 -56886848 - L2 LINE L2 -961 2353 2215 315 0 0 0 chrX 105713320 105713355 -56886575 + (TAA)n Simple_repeat Simple_repeat 3 37 0 361 255 65 92 chrX 105713596 105713749 -56886181 - MIR3 SINE MIR -37 171 23 378 380 71 38 chrX 105715805 105715993 -56883937 - L2 LINE L2 -1 3271 3091 2009 133 0 29 chrX 105715993 105716338 -56883592 + L1MA3 LINE L1 5969 6303 -2 378 380 71 38 chrX 105716338 105716515 -56883415 - L2 LINE L2 -181 3091 2894 280 257 67 84 chrX 105716757 105716936 -56882994 - MER104 DNA Tc2 -3 177 2 263 77 26 0 chrX 105717791 105717830 -56882100 + MADE1 DNA Mariner 1 40 -40 1951 130 35 0 chrX 105718514 105718799 -56881131 - AluSx SINE Alu -17 295 1 550 309 83 27 chrX 105719591 105719892 -56880038 - L2 LINE L2 -1348 1966 1649 201 241 139 13 chrX 105719891 105719970 -56879960 - L2 LINE L2 0 3313 3225 * 457 224 13 103 chrX 105719993 105720029 -56879901 + MER20B DNA MER1_type 54 92 -691 1864 163 0 17 chrX 105720029 105720330 -56879600 - AluJo SINE Alu -16 296 1 457 224 13 103 chrX 105720330 105720449 -56879481 + MER20B DNA MER1_type 92 195 -588 1814 287 92 74 chrX 105720508 105720537 -56879393 + L2 LINE L2 1959 1986 -1328 2106 117 40 0 chrX 105720537 105720835 -56879095 - AluSx SINE Alu -2 310 1 1814 287 92 74 chrX 105720835 105721124 -56878806 + L2 LINE L2 1986 2268 -1046 2277 52 0 0 chrX 105721124 105721396 -56878534 - AluY SINE Alu -39 272 1 1814 287 92 74 chrX 105721396 105721810 -56878120 + L2 LINE L2 2268 2717 -597 2077 117 35 0 chrX 105721810 105722092 -56877838 + AluSx SINE Alu 1 292 -20 1814 287 92 74 chrX 105722092 105722344 -56877586 + L2 LINE L2 2717 2963 -351 249 248 109 0 chrX 105722362 105722463 -56877467 - L1M4 LINE L1 -1936 4210 4099 1596 103 44 18 chrX 105722509 105722782 -56877148 + L1MA1 LINE L1 5770 6049 -253 449 234 81 14 chrX 105722803 105723025 -56876905 - L1 LINE L1 -2083 4063 3815 285 133 0 0 chrX 105723025 105723070 -56876860 - L2 LINE L2 0 3313 3269 2048 160 0 0 chrX 105723260 105723567 -56876363 - AluSx SINE Alu -5 307 1 726 65 0 0 chrX 105723687 105723779 -56876151 - LTR14 LTR ERVK -456 92 1 881 281 29 11 chrX 105723848 105724122 -56875808 - L2 LINE L2 -44 3269 2991 198 0 0 0 chrX 105724143 105724165 -56875765 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1883 151 7 0 chrX 105724167 105724446 -56875484 - AluJb SINE Alu -27 285 5 534 311 17 6 chrX 105724452 105724629 -56875301 - L2 LINE L2 -2601 713 535 1779 188 38 12 chrX 105724634 105725033 -56874897 - L1MA9 LINE L1 -39 6273 5865 1403 251 76 13 chrX 105725070 105725464 -56874466 - L2 LINE L2 -2864 450 32 2216 226 45 28 chrX 105726706 105727237 -56872693 + MLT1F LTR MaLR 1 540 -2 1851 154 0 24 chrX 105727254 105727552 -56872378 + AluJo SINE Alu 1 291 -21 214 333 56 0 chrX 105727567 105727621 -56872309 - MIR SINE MIR -187 75 19 2945 130 49 40 chrX 105728896 105729112 -56870818 - L1MB5 LINE L1 -9 6165 5952 2135 101 10 0 chrX 105729112 105729418 -56870512 + AluY SINE Alu 1 309 -2 2945 130 49 40 chrX 105729418 105729753 -56870177 - L1MB5 LINE L1 -222 5952 5609 362 196 286 8 chrX 105730115 105730248 -56869682 + MIR SINE MIR 86 255 -7 213 175 0 0 chrX 105732900 105732940 -56866990 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1407 97 0 0 chrX 105734897 105735072 -56864858 + AluSq SINE Alu 1 175 -138 2673 170 17 73 chrX 105736277 105736812 -56863118 - MLT2B3 LTR ERVL 0 554 53 2371 84 3 0 chrX 105736812 105737109 -56862821 - AluSc SINE Alu -11 298 1 2673 170 17 73 chrX 105737109 105737160 -56862770 - MLT2B3 LTR ERVL -501 53 1 207 114 0 0 chrX 105737725 105737760 -56862170 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 623 354 50 43 chrX 105737761 105738386 -56861544 - L2 LINE L2 0 3313 2606 1578 193 93 30 chrX 105738459 105738889 -56861041 + MSTB2 LTR MaLR 1 457 0 273 275 68 29 chrX 105738892 105739099 -56860831 - L1ME4a LINE L1 -25 6096 5882 670 296 83 6 chrX 105739179 105739649 -56860281 - L1MEd LINE L1 -3430 2699 2194 794 231 63 35 chrX 105740134 105740688 -56859242 - L1MEd LINE L1 -860 1630 994 409 270 42 58 chrX 105740683 105740736 -56859194 - L1MEd LINE L1 -5336 783 731 * 2393 208 94 60 chrX 105740736 105741535 -56858395 - LTR1B LTR ERV1 0 826 1 409 270 42 58 chrX 105741535 105741670 -56858260 - L1MEd LINE L1 -5388 731 598 395 274 26 39 chrX 105741689 105741842 -56858088 - L1MEd LINE L1 -5581 538 388 504 263 95 5 chrX 105741919 105742109 -56857821 - L1MEd LINE L1 -5905 214 8 1454 289 46 5 chrX 105742176 105742592 -56857338 - LTR16A LTR ERVL 0 450 18 483 278 84 35 chrX 105742702 105743205 -56856725 - L1ME LINE L1 -404 5717 5180 3992 91 18 35 chrX 105743757 105744365 -56855565 + MER4A LTR ERV1 1 598 -2 2256 109 0 0 chrX 105744463 105744756 -56855174 - AluSq SINE Alu -18 295 3 812 219 15 0 chrX 105745122 105745318 -56854612 + L1MD3 LINE L1 7797 7995 0 879 195 81 14 chrX 105745360 105745570 -56854360 + L1MA4 LINE L1 6 229 -6801 * 2078 158 8 0 chrX 105745569 105745954 -56853976 + L1MA4 LINE L1 5374 5761 -1345 1472 146 20 4 chrX 105745957 105746210 -56853720 + MER49 LTR ERV1 4 260 -663 667 91 0 10 chrX 105746251 105746350 -56853580 + MER4A LTR ERV1 1 98 -566 334 23 23 0 chrX 105746350 105746393 -56853537 + MER4A LTR ERV1 261 304 -360 268 119 0 0 chrX 105746393 105746435 -56853495 + MER4A LTR ERV1 623 664 0 2649 159 2 15 chrX 105746435 105747090 -56852840 + L1MA4 LINE L1 5827 6475 -745 1303 209 79 0 chrX 105747106 105747422 -56852508 + L1MA4 LINE L1 6908 7248 -12 2334 153 48 26 chrX 105747470 105747974 -56851956 + L1MA8 LINE L1 5769 6283 -8 201 159 0 0 chrX 105747977 105748021 -56851909 + T-rich Low_complexity Low_complexity 4 47 0 23 0 0 0 chrX 105748031 105748054 -56851876 + AT_rich Low_complexity Low_complexity 1 23 0 1071 241 18 53 chrX 105748448 105748789 -56851141 + L1M4 LINE L1 8 336 -6206 * 1512 208 3 0 chrX 105748785 105749132 -56850798 + L1M4 LINE L1 4142 4489 -2155 2194 158 36 14 chrX 105749137 105749178 -56850752 - MSTA LTR MaLR 0 428 389 2138 121 0 0 chrX 105749178 105749468 -56850462 + AluSx SINE Alu 1 290 -22 2194 158 36 14 chrX 105749468 105749488 -56850442 - MSTA LTR MaLR -39 389 371 2041 37 0 0 chrX 105749488 105749758 -56850172 + L1PA3 LINE L1 5896 6155 0 2194 158 36 14 chrX 105749758 105750114 -56849816 - MSTA LTR MaLR -57 371 1 445 152 12 8 chrX 105750115 105750215 -56849715 - L1MC2 LINE L1 -342 5991 5895 823 129 0 9 chrX 105750229 105750375 -56849555 + MSTA LTR MaLR 16 159 -267 3972 189 39 89 chrX 105750378 105751450 -56848480 - L1MC2 LINE L1 -825 5321 4196 2142 131 0 28 chrX 105751450 105751771 -56848159 - AluSx SINE Alu 0 312 1 3972 189 39 89 chrX 105751771 105751806 -56848124 - L1MC2 LINE L1 -1950 4196 4161 2142 139 3 0 chrX 105751806 105752108 -56847822 - AluSx SINE Alu -9 303 1 3972 189 39 89 chrX 105752108 105752297 -56847633 - L1MC2 LINE L1 -1985 4161 4090 719 84 56 21 chrX 105752294 105752436 -56847494 + L1MC3 LINE L1 6951 7097 -688 * 265 297 0 0 chrX 105752436 105752510 -56847420 + MLT1F1 LTR MaLR 35 108 -459 1512 156 85 80 chrX 105752510 105752850 -56847080 + L1MC3 LINE L1 7175 7567 -218 1784 154 0 33 chrX 105752850 105753149 -56846781 - AluJo SINE Alu -23 289 1 1512 156 85 80 chrX 105753149 105753367 -56846563 + L1MC3 LINE L1 7567 7783 -2 * 2525 182 26 18 chrX 105753364 105753930 -56846000 + L1MB7 LINE L1 5320 5890 -294 1579 185 13 36 chrX 105753938 105754246 -56845684 + AluJo SINE Alu 9 309 -3 907 131 0 8 chrX 105754253 105754383 -56845547 + FLAM_C SINE Alu 1 129 -14 261 250 0 0 chrX 105754401 105754473 -56845457 + A-rich Low_complexity Low_complexity 1 72 0 901 188 5 25 chrX 105754479 105754608 -56845322 + L1MB7 LINE L1 5879 6004 -180 1604 195 16 27 chrX 105754608 105754977 -56844953 + MLT1A1 LTR MaLR 1 365 0 901 188 5 25 chrX 105754977 105755049 -56844881 + L1MB7 LINE L1 6004 6076 -108 831 139 15 0 chrX 105755067 105755204 -56844726 + AluSg/x SINE Alu 173 311 -1 366 123 62 0 chrX 105755219 105755284 -56844646 + LTR53 LTR ERVL 1 69 -450 1381 176 118 13 chrX 105755329 105755635 -56844295 + LTR53 LTR ERVL 181 518 -1 479 144 33 0 chrX 105755635 105755725 -56844205 + L1MB7 LINE L1 6076 6168 -16 2128 108 7 0 chrX 105755732 105756019 -56843911 - AluSx SINE Alu -23 289 1 2221 117 0 0 chrX 105756209 105756507 -56843423 + AluSx SINE Alu 1 298 -14 1110 153 0 0 chrX 105756507 105756684 -56843246 + AluSg/x SINE Alu 132 308 -2 224 292 0 31 chrX 105756906 105756971 -56842959 + MIR SINE MIR 5 67 -195 2044 121 7 10 chrX 105757390 105757697 -56842233 - AluSx SINE Alu -6 306 1 282 125 0 0 chrX 105757869 105757917 -56842013 + (TTC)n Simple_repeat Simple_repeat 1 48 0 212 119 0 24 chrX 105758571 105758613 -56841317 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 222 91 0 0 chrX 105758791 105758824 -56841106 + (ATG)n Simple_repeat Simple_repeat 2 34 0 451 262 215 0 chrX 105758846 105758995 -56840935 - MIR SINE MIR -38 224 44 1381 228 104 0 chrX 105759372 105759736 -56840194 + L1MB7 LINE L1 2 403 -6139 2208 93 3 63 chrX 105759818 105760151 -56839779 - AluSq SINE Alu 0 313 1 3155 144 22 0 chrX 105760188 105760756 -56839174 + L1MA9 LINE L1 5241 5820 -492 1654 164 37 35 chrX 105760759 105761136 -56838794 + L1MA9 LINE L1 5935 6312 0 1784 229 149 72 chrX 105761138 105761616 -56838314 + L1MB7 LINE L1 3663 4103 -2541 2132 30 8 4 chrX 105761616 105761878 -56838052 - L1PA4 LINE L1 0 6155 5893 1784 229 149 72 chrX 105761878 105762357 -56837573 + L1MB7 LINE L1 4103 4544 -2100 1606 162 37 0 chrX 105762357 105762656 -56837274 - AluSx SINE Alu 0 309 1 1784 229 149 72 chrX 105762656 105762705 -56837225 + L1MB7 LINE L1 4544 4588 -2056 2250 110 0 0 chrX 105762705 105763005 -56836925 + AluSx SINE Alu 1 300 -12 1784 229 149 72 chrX 105763005 105763111 -56836819 + L1MB7 LINE L1 4588 4865 -1779 24 0 0 0 chrX 105763111 105763135 -56836795 + AT_rich Low_complexity Low_complexity 1 24 0 1545 124 4 77 chrX 105763157 105763430 -56836500 + AluSx SINE Alu 13 265 -47 532 100 11 11 chrX 105763431 105763521 -56836409 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 1644 181 21 0 chrX 105763539 105763877 -56836053 + L1MB7 LINE L1 5208 5552 -1092 927 124 0 0 chrX 105765632 105765777 -56834153 + (TA)n Simple_repeat Simple_repeat 2 146 0 1934 99 0 0 chrX 105766447 105766699 -56833231 - AluSq SINE Alu -13 300 49 2001 97 0 14 chrX 105767184 105767463 -56832467 - AluSc SINE Alu 0 309 35 2066 129 7 0 chrX 105768021 105768316 -56831614 - AluJb SINE Alu -15 297 1 2289 172 42 19 chrX 105768333 105768400 -56831530 + L1MB7 LINE L1 5591 5655 -1027 2036 130 10 3 chrX 105768400 105768693 -56831237 - AluSq SINE Alu -18 295 1 2289 172 42 19 chrX 105768693 105769304 -56830626 + L1MB7 LINE L1 5655 6281 -401 2134 123 158 11 chrX 105769304 105769677 -56830253 + MSTA LTR MaLR 1 428 0 1231 78 26 0 chrX 105769677 105769868 -56830062 + MSTA-int LTR MaLR 1 196 -1455 2227 154 98 31 chrX 105769869 105770388 -56829542 - MER41A LTR ERV1 0 554 1 4693 95 38 3 chrX 105770390 105771103 -56828827 - MER41A-int LTR ERV1 -3 5943 5206 3220 90 4 15 chrX 105771109 105771630 -56828300 - MER41-int LTR ERV1 -2142 3804 3290 967 118 29 6 chrX 105771630 105771800 -56828130 - MER41-int LTR ERV1 -3042 2904 2731 1556 77 0 10 chrX 105771813 105772022 -56827908 - L1PA8 LINE L1 -6 6166 5960 1416 101 0 0 chrX 105772041 105772248 -56827682 - L1P LINE L1 -3452 2694 2488 507 76 25 0 chrX 105772269 105772348 -56827582 + Alu SINE Alu 228 308 -2 15472 155 11 13 chrX 105772348 105773569 -56826361 + L1MA3 LINE L1 3397 4619 -3105 2440 74 3 0 chrX 105773569 105773865 -56826065 + AluSp SINE Alu 1 297 -16 15472 155 11 13 chrX 105773865 105776980 -56822950 + L1MA3 LINE L1 4619 7724 0 838 182 37 52 chrX 105776968 105777213 -56822717 + L1MB7 LINE L1 6434 6662 -20 * 543 186 13 77 chrX 105777225 105777381 -56822549 + L1M4 LINE L1 4768 4913 -1233 528 339 58 6 chrX 105777464 105777638 -56822292 + MER5A DNA MER1_type 7 189 0 261 275 38 12 chrX 105777640 105777720 -56822210 + MIR SINE MIR 11 92 -170 234 333 22 58 chrX 105777991 105778129 -56821801 - L2 LINE L2 -215 3057 2925 196 254 34 17 chrX 105778779 105778838 -56821092 + MER5A DNA MER1_type 13 72 -117 3451 157 41 20 chrX 105779026 105779050 -56820880 - L1MB4 LINE L1 -10 6170 6148 1876 155 10 3 chrX 105779050 105779346 -56820584 - AluJb SINE Alu -14 298 1 3451 157 41 20 chrX 105779346 105779982 -56819948 - L1MB4 LINE L1 -32 6148 5496 494 185 22 0 chrX 105780767 105780859 -56819071 + MER81 DNA DNA 20 113 -1 186 200 22 22 chrX 105781205 105781250 -56818680 - L2 LINE L2 0 3272 3228 2244 264 69 52 chrX 105781377 105782534 -56817396 - L2 LINE L2 0 3313 2119 6598 52 4 0 chrX 105782534 105783355 -56816575 + L1PA7 LINE L1 5326 6149 -5 2244 264 69 52 chrX 105783355 105783552 -56816378 - L2 LINE L2 -1194 2119 1927 759 234 13 0 chrX 105783484 105783638 -56816292 - MIR SINE MIR -95 167 12 * 1140 186 0 0 chrX 105783646 105783834 -56816096 - MER5A DNA MER1_type -1 188 1 671 233 209 5 chrX 105784423 105784629 -56815301 - MIR SINE MIR 0 262 15 180 111 0 0 chrX 105785094 105785121 -56814809 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3013 177 27 10 chrX 105785140 105785762 -56814168 - L1MD2 LINE L1 -2 6357 5725 1413 170 61 21 chrX 105785766 105786096 -56813834 - MLT1A1 LTR MaLR 0 365 23 1557 147 8 4 chrX 105786116 105786381 -56813549 - L1MD2 LINE L1 -531 5711 5446 431 219 0 0 chrX 105786792 105786873 -56813057 - MER63A DNA MER1_type -35 175 95 2192 136 55 106 chrX 105786873 105787663 -56812267 + MER51A LTR ERV1 1 830 196 1021 116 12 6 chrX 105787663 105787836 -56812094 + (TTTTC)n Simple_repeat Simple_repeat 2 175 0 2139 104 0 0 chrX 105787838 105788118 -56811812 - AluSx SINE Alu -32 280 1 2192 136 55 106 chrX 105788118 105788259 -56811671 + MER51A LTR ERV1 487 634 0 462 235 0 0 chrX 105788259 105788357 -56811573 - MER63A DNA MER1_type 0 98 1 443 299 35 0 chrX 105788426 105788570 -56811360 - MIR SINE MIR -58 204 56 280 324 0 29 chrX 105788945 105789050 -56810880 + MLT1K LTR MaLR 232 333 -255 1377 161 43 40 chrX 105789332 105789605 -56810325 - MER33 DNA MER1_type -2261 324 48 3053 88 85 24 chrX 105789605 105790062 -56809868 - MER31A LTR ERV1 0 485 1 1377 161 43 40 chrX 105790062 105790111 -56809819 - MER33 DNA MER1_type -2537 48 1 1237 170 5 0 chrX 105791230 105791418 -56808512 + MER5A DNA MER1_type 1 189 0 2315 108 0 0 chrX 105791493 105791798 -56808132 + AluSx SINE Alu 1 305 -7 291 345 59 34 chrX 105793329 105793448 -56806482 - L2 LINE L2 -9 3263 3142 432 240 124 0 chrX 105793979 105794108 -56805822 - MIR SINE MIR -72 190 46 641 251 51 20 chrX 105794202 105794397 -56805533 + L1M4 LINE L1 1 201 -6341 * 3249 209 38 16 chrX 105794392 105795466 -56804464 + L1M4 LINE L1 842 1945 -4701 2515 160 14 27 chrX 105795468 105795906 -56804024 + MER73 LTR ERVL 213 644 0 4158 236 55 21 chrX 105796023 105798800 -56801130 + L1MB7 LINE L1 2049 4728 -2837 1179 179 44 0 chrX 105798800 105799029 -56800901 + L1MA10 LINE L1 6094 6332 -2 6000 188 37 21 chrX 105799030 105799982 -56799948 + L1MB7 LINE L1 5437 6424 -1173 2283 194 34 67 chrX 105799982 105800518 -56799412 - MLT2B1 LTR ERVL -2 518 1 6000 188 37 21 chrX 105800518 105800998 -56798932 + L1MB7 LINE L1 6424 6895 -702 24 24 0 24 chrX 105800998 105801022 -56798908 + AT_rich Low_complexity Low_complexity 1 25 -16 1911 131 25 0 chrX 105801022 105801304 -56798626 + AluSx SINE Alu 1 289 -23 24 24 0 24 chrX 105801304 105801321 -56798609 + AT_rich Low_complexity Low_complexity 25 41 0 4867 148 6 9 chrX 105801357 105802162 -56797768 - L1PB4 LINE L1 -27 6129 5327 3242 170 57 27 chrX 105802182 105802846 -56797084 + L1MB7 LINE L1 6904 7587 -16 873 246 39 5 chrX 105802966 105803173 -56796757 + MER58C DNA MER1_type 1 214 -1 205 287 115 23 chrX 105803249 105803336 -56796594 - MIR SINE MIR -70 192 98 1282 291 67 24 chrX 105805817 105806420 -56793510 + L2 LINE L2 2690 3313 0 408 352 32 8 chrX 105806562 105806687 -56793243 - L2 LINE L2 -18 3254 3127 2590 150 29 9 chrX 105806802 105807222 -56792708 + MSTA LTR MaLR 1 428 0 360 0 0 0 chrX 105808109 105808149 -56791781 + (TG)n Simple_repeat Simple_repeat 2 41 0 1153 277 60 18 chrX 105808544 105808945 -56790985 - LTR16C LTR ERVL -2 489 72 282 246 15 0 chrX 105809279 105809344 -56790586 + L1ME4a LINE L1 5521 5586 -535 389 213 65 0 chrX 105809348 105809456 -56790474 + L1ME4a LINE L1 5808 5922 -199 1345 228 58 75 chrX 105809678 105810094 -56789836 - HsTC2 DNA Tc2 -1008 890 482 828 184 58 144 chrX 105810087 105810414 -56789516 - HsTC2 DNA Tc2 -1599 299 1 * 414 270 24 0 chrX 105810414 105810540 -56789390 + L1ME4a LINE L1 5927 6055 -66 654 209 15 22 chrX 105812680 105812814 -56787116 - MER94 DNA DNA 0 134 2 400 240 41 50 chrX 105813069 105813190 -56786740 - MIR SINE MIR -114 148 29 440 264 236 0 chrX 105814107 105814289 -56785641 + MIR SINE MIR 32 256 -6 684 178 79 20 chrX 105814572 105814724 -56785206 + MER5A DNA MER1_type 26 186 -3 263 161 71 0 chrX 105815052 105815108 -56784822 + MER5A DNA MER1_type 1 60 -129 6868 188 83 16 chrX 105815837 105817291 -56782639 + MER52A LTR ERV1 204 1755 0 292 121 0 6 chrX 105817292 105817373 -56782557 + MER5A DNA MER1_type 57 189 0 1686 150 57 14 chrX 105817414 105817537 -56782393 + AluJb SINE Alu 1 117 -195 216 86 0 0 chrX 105817537 105817572 -56782358 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1686 150 57 14 chrX 105817572 105817728 -56782202 + AluJb SINE Alu 117 292 -20 352 318 45 40 chrX 105819682 105819858 -56780072 + MIR SINE MIR 6 182 -80 283 289 40 0 chrX 105820365 105820441 -56779489 + MER91C DNA MER1_type 38 116 -24 460 283 55 71 chrX 105820476 105820787 -56779143 + L2 LINE L2 2965 3270 -2 2487 137 18 21 chrX 105821242 105821629 -56778301 + MLT1B LTR MaLR 1 386 -4 290 240 0 0 chrX 105822025 105822075 -56777855 + MIR SINE MIR 2 51 -211 972 243 37 8 chrX 105822075 105822318 -56777612 + MIR SINE MIR 9 258 -4 218 222 159 0 chrX 105822326 105822389 -56777541 + MIR SINE MIR 35 107 -101 252 245 94 28 chrX 105822836 105822942 -56776988 + LTR67 LTR ERVL 443 555 -2 276 292 9 71 chrX 105822985 105823098 -56776832 - MIR SINE MIR -112 150 45 310 134 30 0 chrX 105824133 105824200 -56775730 + CT-rich Low_complexity Low_complexity 2 70 0 2433 109 54 14 chrX 105824268 105824618 -56775312 + THE1B LTR MaLR 1 364 0 663 327 67 74 chrX 105824618 105825096 -56774834 - L2 LINE L2 -7 3265 2785 2264 139 3 29 chrX 105825096 105825442 -56774488 - MER1B DNA MER1_type 0 337 1 663 327 67 74 chrX 105825442 105825714 -56774216 - L2 LINE L2 -487 2785 2513 1989 132 62 57 chrX 105825714 105826086 -56773844 + THE1C LTR MaLR 2 375 0 663 327 67 74 chrX 105826086 105826372 -56773558 - L2 LINE L2 -759 2513 2232 1116 343 51 44 chrX 105826994 105828278 -56771652 - L2 LINE L2 -1123 2191 900 398 274 81 51 chrX 105828688 105828885 -56771045 + MIR SINE MIR 9 211 -51 2187 149 30 63 chrX 105829717 105830114 -56769816 + MLT1B LTR MaLR 1 384 -6 307 302 112 9 chrX 105830502 105830618 -56769312 - MER5A DNA MER1_type 0 189 62 969 228 73 8 chrX 105830917 105831123 -56768807 - L1ME3A LINE L1 -225 5945 5717 180 0 0 0 chrX 105831123 105831143 -56768787 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 969 228 73 8 chrX 105831143 105831195 -56768735 - L1ME3A LINE L1 -453 5717 5670 212 239 0 60 chrX 105831197 105831264 -56768666 - MER5A DNA MER1_type -116 73 11 200 173 39 39 chrX 105831653 105831705 -56768225 - L2 LINE L2 -217 3055 3004 2908 290 131 46 chrX 105832119 105832378 -56767552 + L2 LINE L2 1293 1529 -1743 1780 244 38 63 chrX 105832378 105832899 -56767031 - MLT1J LTR MaLR -3 508 1 2908 290 131 46 chrX 105832899 105834438 -56765492 + L2 LINE L2 1529 3272 0 1611 197 92 160 chrX 105834581 105835549 -56764381 + MER4D LTR ERV1 2 903 0 201 342 100 54 chrX 105835857 105836266 -56763664 - L2 LINE L2 -2330 984 557 1497 240 94 41 chrX 105836409 105836868 -56763062 - LTR16C LTR ERVL -8 483 1 2083 129 3 0 chrX 105836945 105837239 -56762691 + AluJb SINE Alu 1 295 -17 691 279 63 119 chrX 105837354 105837985 -56761945 - L1MC4 LINE L1 -312 7730 7135 695 287 162 0 chrX 105838034 105838250 -56761680 + MIR SINE MIR 2 252 -10 521 258 8 0 chrX 105838275 105838403 -56761527 - L1MC5 LINE L1 -865 7096 6968 21 36 0 0 chrX 105838697 105838725 -56761205 + AT_rich Low_complexity Low_complexity 1 28 0 482 214 107 9 chrX 105838860 105838972 -56760958 + MER45 DNA AcHobo 1 123 -55 2033 132 0 22 chrX 105839203 105839521 -56760409 - AluSq SINE Alu -1 312 2 222 118 0 0 chrX 105840460 105840494 -56759436 + (TAG)n Simple_repeat Simple_repeat 2 35 0 472 226 165 24 chrX 105840494 105840658 -56759272 - MIR SINE MIR -18 244 58 282 281 0 0 chrX 105841687 105841744 -56758186 - L2 LINE L2 -8 3264 3208 306 337 0 0 chrX 105842313 105842411 -56757519 - L1MC4 LINE L1 -1331 6711 6614 1497 140 8 4 chrX 105844388 105844624 -56755306 - AluJo SINE Alu -12 300 64 2051 270 64 53 chrX 105844826 105845167 -56754763 + L2 LINE L2 2294 2630 -683 2062 125 0 0 chrX 105845167 105845446 -56754484 + AluSx SINE Alu 1 279 -33 202 0 29 57 chrX 105845448 105845483 -56754447 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2051 270 64 53 chrX 105845483 105846146 -56753784 + L2 LINE L2 2630 3313 0 509 298 115 72 chrX 105846389 105846832 -56753098 - MLT1K LTR MaLR -3 585 124 241 320 26 0 chrX 105848096 105848174 -56751756 - L3b LINE CR1 -139 1444 1365 1250 276 72 52 chrX 105848574 105849305 -56750625 + L2 LINE L2 2553 3310 -3 2870 228 26 15 chrX 105849342 105850060 -56749870 + L1M4 LINE L1 3291 4016 -2130 437 215 6 19 chrX 105850061 105850219 -56749711 + GA-rich Low_complexity Low_complexity 4 159 0 2191 125 0 16 chrX 105851423 105851752 -56748178 - AluSx SINE Alu 0 312 1 675 251 21 48 chrX 105851759 105851946 -56747984 + MER5A DNA MER1_type 7 188 -1 208 339 48 0 chrX 105852957 105853019 -56746911 + MER91A DNA MER1_type 1 65 -131 357 272 26 26 chrX 105853159 105853273 -56746657 + MIR3 SINE MIR 58 171 -37 227 69 0 0 chrX 105853286 105853315 -56746615 + MER91B DNA MER1_type 36 64 -126 2047 144 10 7 chrX 105853615 105853920 -56746010 - AluSx SINE Alu -6 306 1 191 327 0 0 chrX 105854193 105854248 -56745682 + MIR3 SINE MIR 143 197 -11 2636 161 16 9 chrX 105854977 105855400 -56744530 - MSTB LTR MaLR 0 426 1 2249 112 3 0 chrX 105855445 105855741 -56744189 + AluSq SINE Alu 1 297 -16 43956 32 22 2 chrX 105855746 105861811 -56738119 + L1PA2 LINE L1 2 6189 0 200 119 0 24 chrX 105862750 105862792 -56737138 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 496 285 70 6 chrX 105864651 105864823 -56735107 + MIR SINE MIR 80 262 0 282 143 0 0 chrX 105864996 105865045 -56734885 - MLT2B1 LTR ERVL 0 515 467 1635 221 85 55 chrX 105865090 105865108 -56734822 - MLT2B1 LTR ERVL -35 485 469 2409 80 0 25 chrX 105865108 105865422 -56734508 + AluY SINE Alu 1 306 -5 1635 221 85 55 chrX 105865422 105865874 -56734056 - MLT2B1 LTR ERVL -51 469 1 680 195 149 26 chrX 105865901 105866055 -56733875 + MER5A DNA MER1_type 11 183 -6 436 266 56 49 chrX 105866077 105866220 -56733710 + MER5A DNA MER1_type 3 146 -43 432 0 0 0 chrX 105866660 105866708 -56733222 + (CA)n Simple_repeat Simple_repeat 2 49 0 1962 164 3 0 chrX 105867126 105867436 -56732494 - AluJb SINE Alu -1 311 1 22937 78 10 3 chrX 105867467 105871378 -56728552 - L1PA7 LINE L1 -13 6141 2207 1344 282 22 64 chrX 105871851 105872456 -56727474 - L2 LINE L2 -2 3311 2730 245 98 24 0 chrX 105872485 105872526 -56727404 + (CA)n Simple_repeat Simple_repeat 1 42 0 886 256 139 44 chrX 105872748 105872973 -56726957 - L1ME2 LINE L1 -283 5881 5679 1430 208 12 0 chrX 105872973 105873228 -56726702 - MIR SINE MIR 0 262 5 886 256 139 44 chrX 105873228 105873445 -56726485 - L1ME2 LINE L1 -485 5679 5484 2266 113 0 13 chrX 105873445 105873754 -56726176 - AluSq SINE Alu -8 305 1 886 256 139 44 chrX 105873754 105873983 -56725947 - L1ME2 LINE L1 -680 5484 5121 780 296 67 72 chrX 105874481 105875324 -56724606 - L2 LINE L2 -1 3271 2447 208 225 0 0 chrX 105877689 105877729 -56722201 + (CA)n Simple_repeat Simple_repeat 1 40 0 281 338 126 20 chrX 105877851 105878002 -56721928 + L2 LINE L2 3101 3267 -5 311 346 20 0 chrX 105878236 105878337 -56721593 - MIR SINE MIR -76 132 30 267 325 12 0 chrX 105878613 105878693 -56721237 - Charlie8 DNA MER1_type -2336 81 1 444 280 29 41 chrX 105878693 105878936 -56720994 + L1ME4a LINE L1 5657 5896 -225 1023 164 30 35 chrX 105879147 105879378 -56720552 + L1M4 LINE L1 4832 5061 -1085 336 94 0 0 chrX 105879497 105879550 -56720380 + (TG)n Simple_repeat Simple_repeat 2 54 0 1098 255 98 46 chrX 105879949 105880318 -56719612 - LTR16A LTR ERVL -6 444 57 2117 106 42 0 chrX 105880499 105880783 -56719147 - AluSx SINE Alu -16 296 1 1431 262 60 83 chrX 105880802 105881304 -56718626 - L2 LINE L2 -861 2453 1974 405 0 0 0 chrX 105881304 105881349 -56718581 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1431 262 60 83 chrX 105881349 105881617 -56718313 - L2 LINE L2 -1340 1974 1701 1816 185 106 43 chrX 105881634 105882098 -56717832 - L1ME3A LINE L1 0 6170 5678 5178 137 11 47 chrX 105882537 105883570 -56716360 - L1MB5 LINE L1 -8 7585 6589 1103 188 10 0 chrX 105883571 105883778 -56716152 - L1MB5 LINE L1 -2241 5324 5116 182 228 35 0 chrX 105884000 105884057 -56715873 - MIR SINE MIR -120 142 84 252 295 42 32 chrX 105884177 105884272 -56715658 - L3b LINE CR1 -202 1381 1286 2522 50 0 3 chrX 105884275 105884575 -56715355 - AluY SINE Alu -12 299 1 923 130 0 0 chrX 105884611 105884734 -56715196 + AluJo SINE Alu 2 124 -178 7330 124 15 4 chrX 105884794 105886921 -56713009 - L1MA2 LINE L1 0 6304 4154 4416 178 49 28 chrX 105886916 105888004 -56711926 - L1MB5 LINE L1 -2630 4935 3825 * 229 216 0 39 chrX 105887973 105888024 -56711906 - L1MB5 LINE L1 -4520 2976 2928 * 4171 182 11 14 chrX 105888011 105888740 -56711190 - L1MB5 LINE L1 -6829 736 10 996 200 0 0 chrX 105888758 105888923 -56711007 + AluJo SINE Alu 134 298 -14 788 266 11 44 chrX 105889793 105890067 -56709863 - L1ME LINE L1 -477 5693 5429 502 204 0 0 chrX 105890095 105890193 -56709737 - L1MC4 LINE L1 -3 8039 7942 824 169 61 7 chrX 105890194 105890342 -56709588 - FRAM SINE Alu -23 153 1 3880 173 40 64 chrX 105890343 105890554 -56709376 - L1MC4a LINE L1 -88 7720 7505 2269 164 139 22 chrX 105890554 105891006 -56708924 + MLT1D LTR MaLR 1 505 0 3880 173 40 64 chrX 105891006 105891673 -56708257 - L1MC4a LINE L1 -303 7505 6863 1634 246 93 32 chrX 105891678 105892336 -56707594 - L1ME LINE L1 -1079 5067 4370 1655 184 32 57 chrX 105892352 105892673 -56707257 + Looper DNA T2_type 531 840 -718 2205 115 0 3 chrX 105892673 105892968 -56706962 - AluSq SINE Alu -19 294 1 1655 184 32 57 chrX 105892968 105893087 -56706843 + Looper DNA T2_type 840 960 -598 1286 174 33 33 chrX 105893088 105893330 -56706600 + AluJo SINE Alu 50 291 -21 351 0 0 0 chrX 105893407 105893446 -56706484 + (TA)n Simple_repeat Simple_repeat 2 40 0 908 225 26 80 chrX 105893464 105893585 -56706345 - L1M4 LINE L1 -1294 4852 4726 2347 92 0 0 chrX 105893585 105893889 -56706041 + L1MA1 LINE L1 5999 6302 0 908 225 26 80 chrX 105893889 105894069 -56705861 - L1M4 LINE L1 -1420 4726 4567 1146 241 52 38 chrX 105894469 105894889 -56705041 - HAL1 LINE L1 -269 2238 1813 2316 260 35 10 chrX 105894945 105895663 -56704267 - HAL1 LINE L1 -794 1713 978 1114 213 31 0 chrX 105895659 105895913 -56704017 + L1MA4 LINE L1 6000 6261 -39 * 1120 197 77 120 chrX 105895920 105896122 -56703808 - MLT1B LTR MaLR -28 362 182 459 35 0 0 chrX 105896122 105896179 -56703751 + (TG)n Simple_repeat Simple_repeat 1 57 0 1120 197 77 120 chrX 105896179 105896351 -56703579 - MLT1B LTR MaLR -208 182 4 806 177 0 0 chrX 105896420 105896544 -56703386 + FLAM_C SINE Alu 1 124 -19 41 21 0 0 chrX 105896544 105896592 -56703338 + AT_rich Low_complexity Low_complexity 1 48 0 289 291 71 89 chrX 105896966 105897248 -56702682 + MLT1-int LTR MaLR 1071 1347 -24 524 282 21 64 chrX 105897329 105897655 -56702275 + MLT1H LTR MaLR 196 507 -42 433 221 89 25 chrX 105897671 105897761 -56702169 - HAL1 LINE L1 -1514 993 910 336 111 0 0 chrX 105897761 105897815 -56702115 + (TG)n Simple_repeat Simple_repeat 1 54 0 433 221 89 25 chrX 105897815 105897882 -56702048 - HAL1 LINE L1 -1597 910 826 6376 156 98 24 chrX 105897987 105899206 -56700724 + Tigger6b DNA MER2_type 8 1317 -280 1678 162 46 36 chrX 105899215 105899517 -56700413 - AluJb SINE Alu -7 305 1 11932 158 19 12 chrX 105899524 105900056 -56699874 - L1PB4 LINE L1 -2 6856 6329 2404 84 0 6 chrX 105900056 105900367 -56699563 - AluSc SINE Alu 0 309 1 11932 158 19 12 chrX 105900367 105901522 -56698408 - L1PB4 LINE L1 -529 6329 5183 2277 190 69 58 chrX 105901522 105901554 -56698376 - MLT2B3 LTR ERVL 0 554 524 252 0 0 0 chrX 105901554 105901582 -56698348 + (TG)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chrX 105901581 105901609 -56698321 + (GA)n Simple_repeat Simple_repeat 1 28 0 2277 190 69 58 chrX 105901582 105902124 -56697806 - MLT2B3 LTR ERVL -30 524 1 11932 158 19 12 chrX 105902124 105903556 -56696374 - L1PB4 LINE L1 -1675 5183 3714 3862 213 31 20 chrX 105903548 105904427 -56695503 - L1PB4 LINE L1 -4892 1957 1070 * 1149 145 161 4 chrX 105904858 105905106 -56694824 + Tigger6b DNA MER2_type 1309 1595 -2 1274 276 141 29 chrX 105905106 105905398 -56694532 - HAL1 LINE L1 -1802 705 447 2121 101 31 0 chrX 105905398 105905684 -56694246 - AluSc SINE Alu -14 295 1 1274 276 141 29 chrX 105905684 105906017 -56693913 - HAL1 LINE L1 -2060 447 10 577 346 130 19 chrX 105906064 105906532 -56693398 - L2 LINE L2 -2119 1195 676 273 128 0 0 chrX 105906605 105906652 -56693278 + (GGA)n Simple_repeat Simple_repeat 3 49 0 652 211 36 143 chrX 105906669 105906734 -56693196 - MLT1J LTR MaLR -236 275 205 1863 158 24 0 chrX 105906734 105907026 -56692904 - AluSx SINE Alu -13 299 1 652 211 36 143 chrX 105907026 105907268 -56692662 - MLT1J LTR MaLR -306 205 1 743 231 0 0 chrX 105907415 105907536 -56692394 + FLAM_A SINE Alu 1 121 -12 1734 209 78 74 chrX 105907684 105907831 -56692099 + MLT1D LTR MaLR 1 146 -359 1847 247 45 28 chrX 105907831 105908341 -56691589 - LTR53 LTR ERVL 0 519 1 1734 209 78 74 chrX 105908341 105908696 -56691234 + MLT1D LTR MaLR 146 505 0 919 233 50 33 chrX 105908699 105908939 -56690991 - MIR SINE MIR -7 255 12 322 242 0 0 chrX 105909118 105909184 -56690746 - L2 LINE L2 0 3313 3248 1361 240 59 0 chrX 105909979 105910337 -56689593 + L1ME4a LINE L1 5526 5904 -217 254 293 131 10 chrX 105910364 105910463 -56689467 - L2 LINE L2 0 3313 3203 298 231 147 63 chrX 105910463 105910606 -56689324 + L1ME4a LINE L1 5965 6119 -2 886 181 0 0 chrX 105910629 105910762 -56689168 + FLAM_A SINE Alu 1 133 0 246 217 57 75 chrX 105910867 105910973 -56688957 - MIR SINE MIR -66 196 93 220 271 102 0 chrX 105911222 105911281 -56688649 - L3 LINE CR1 -2 1575 1511 424 72 29 0 chrX 105911318 105911387 -56688543 + (TC)n Simple_repeat Simple_repeat 2 72 0 219 69 0 0 chrX 105912041 105912070 -56687860 + (CTG)n Simple_repeat Simple_repeat 2 30 0 471 203 49 0 chrX 105912392 105912515 -56687415 - MIR SINE MIR 0 262 134 632 264 87 74 chrX 105912518 105912897 -56687033 + HAL1 LINE L1 4 387 -2120 267 331 63 33 chrX 105913121 105913420 -56686510 + HAL1 LINE L1 759 1066 -1441 2208 110 0 0 chrX 105913508 105913799 -56686131 - AluSx SINE Alu -19 293 3 1382 234 106 11 chrX 105913873 105914249 -56685681 - MLT1E1 LTR MaLR 0 654 243 32704 65 1 5 chrX 105914249 105919266 -56680664 + L1PA6 LINE L1 1146 6143 -11 1354 193 37 0 chrX 105919266 105919510 -56680420 - MLT1E1 LTR MaLR -401 253 1 479 249 129 18 chrX 105919510 105919735 -56680195 + HAL1 LINE L1 1107 1356 -1151 671 223 27 0 chrX 105919776 105919924 -56680006 + L1ME1 LINE L1 4441 4592 -1554 337 171 14 0 chrX 105919966 105920036 -56679894 + L1ME1 LINE L1 4597 4667 -1479 189 171 0 0 chrX 105920933 105920968 -56678962 + A-rich Low_complexity Low_complexity 1 35 0 2945 216 76 37 chrX 105920968 105921163 -56678767 + L1ME1 LINE L1 4655 4841 -1325 2117 118 3 7 chrX 105921163 105921467 -56678463 + AluSx SINE Alu 1 303 -9 2945 216 76 37 chrX 105921467 105921900 -56678030 + L1ME1 LINE L1 4841 5256 -910 656 128 147 0 chrX 105921900 105922009 -56677921 + FLAM_C SINE Alu 1 125 -8 2945 216 76 37 chrX 105922009 105922810 -56677120 + L1ME1 LINE L1 5256 6161 -5 299 213 27 0 chrX 105922828 105922903 -56677027 + L1ME2 LINE L1 5862 5938 -226 939 156 102 0 chrX 105922906 105923092 -56676838 - ORSL DNA AcHobo -69 206 2 409 309 43 16 chrX 105923193 105923381 -56676549 + HAL1b LINE L1 748 940 -408 652 251 47 41 chrX 105923441 105923742 -56676188 + HAL1b LINE L1 816 2507 0 485 233 0 0 chrX 105923851 105923941 -56675989 + L2 LINE L2 3134 3223 -49 180 0 0 0 chrX 105924777 105924797 -56675133 + (TTA)n Simple_repeat Simple_repeat 3 22 0 1608 63 0 0 chrX 105924797 105924987 -56674943 - L1PA5 LINE L1 -18 6136 5947 912 209 115 0 chrX 105925959 105926193 -56673737 + MIR SINE MIR 2 262 0 2244 72 38 3 chrX 105926342 105926635 -56673295 + AluY SINE Alu 1 303 -8 1992 162 12 3 chrX 105926700 105927033 -56672897 - L1MA4A LINE L1 0 6303 5968 349 316 0 17 chrX 105927043 105927160 -56672770 - MIR3 SINE MIR -9 199 85 229 267 6 6 chrX 105927462 105927634 -56672296 + (TA)n Simple_repeat Simple_repeat 1 172 0 222 217 22 0 chrX 105928519 105928565 -56671365 + GA-rich Low_complexity Low_complexity 2 48 0 854 310 96 15 chrX 105928641 105928973 -56670957 + L2 LINE L2 1924 2282 -1032 658 269 104 10 chrX 105928976 105929177 -56670753 + MIR SINE MIR 30 249 -13 285 29 0 0 chrX 105929178 105929212 -56670718 + (ATG)n Simple_repeat Simple_repeat 1 34 0 1288 270 165 21 chrX 105929213 105930049 -56669881 + L2 LINE L2 2284 3261 -52 1830 135 19 50 chrX 105930109 105930550 -56669380 - L1M3 LINE L1 -610 5570 5144 1039 243 33 0 chrX 105930759 105931002 -56668928 - MIR SINE MIR -10 252 2 651 275 96 8 chrX 105931185 105931425 -56668505 + MIR SINE MIR 2 262 0 191 273 0 0 chrX 105931945 105931989 -56667941 + L3b LINE CR1 1113 1156 -427 228 307 113 20 chrX 105932571 105932721 -56667209 - L2 LINE L2 -519 2795 2632 189 291 34 43 chrX 105933349 105933466 -56666464 - MIR SINE MIR -80 182 67 431 259 76 0 chrX 105933781 105933912 -56666018 + MIR SINE MIR 68 208 -54 252 277 0 0 chrX 105934869 105934934 -56664996 + A-rich Low_complexity Low_complexity 1 65 0 223 178 22 0 chrX 105935104 105935149 -56664781 - MER5A DNA MER1_type -98 91 46 423 0 0 0 chrX 105935987 105936034 -56663896 + (TC)n Simple_repeat Simple_repeat 2 48 0 207 0 0 0 chrX 105936033 105936056 -56663874 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 470 231 206 35 chrX 105937386 105937585 -56662345 + MIR SINE MIR 30 262 0 406 250 222 0 chrX 105937599 105937743 -56662187 + MIR SINE MIR 51 226 -36 472 303 68 0 chrX 105938581 105938713 -56661217 - MIR SINE MIR -56 206 66 224 119 0 24 chrX 105940970 105941012 -56658918 + (CCCCCT)n Simple_repeat Simple_repeat 5 45 0 206 252 36 18 chrX 105941139 105941250 -56658680 + (CCCG)n Simple_repeat Simple_repeat 1 113 0 307 60 40 0 chrX 105941303 105941353 -56658577 + (CCG)n Simple_repeat Simple_repeat 3 54 0 435 68 0 0 chrX 105941354 105941413 -56658517 + (GGA)n Simple_repeat Simple_repeat 2 60 0 25 51 0 0 chrX 105941525 105941564 -56658366 + GC_rich Low_complexity Low_complexity 1 39 0 360 0 0 0 chrX 105941972 105942012 -56657918 + (CA)n Simple_repeat Simple_repeat 1 40 0 216 67 0 0 chrX 105942176 105942206 -56657724 + (TG)n Simple_repeat Simple_repeat 2 31 0 280 117 17 17 chrX 105944592 105944652 -56655278 + (CA)n Simple_repeat Simple_repeat 2 61 0 308 299 153 33 chrX 105945563 105945954 -56653976 + L2 LINE L2 2040 2477 -837 729 253 6 24 chrX 105946222 105946388 -56653542 - MER5A DNA MER1_type 0 189 27 1793 155 0 31 chrX 105946682 105946993 -56652937 + AluJo SINE Alu 1 302 0 259 247 90 34 chrX 105947002 105947091 -56652839 + L2 LINE L2 3212 3305 -8 351 209 0 0 chrX 105947149 105947216 -56652714 - L2 LINE L2 -3 3269 3203 234 169 0 102 chrX 105947272 105947331 -56652599 + L2 LINE L2 3261 3313 0 1462 171 123 0 chrX 105947467 105947744 -56652186 - AluJo SINE Alu 0 308 1 295 238 32 24 chrX 105947745 105947871 -56652059 - L1MC5 LINE L1 -29 7932 7806 743 270 110 17 chrX 105947885 105948303 -56651627 - L1MC5 LINE L1 -206 7755 7299 188 243 0 0 chrX 105948341 105948378 -56651552 - L2 LINE L2 -665 2649 2613 466 331 6 18 chrX 105948405 105948571 -56651359 - L2 LINE L2 -773 2541 2378 202 247 13 39 chrX 105949232 105949309 -56650621 + CT-rich Low_complexity Low_complexity 4 78 0 453 36 0 0 chrX 105951287 105951342 -56648588 + (CA)n Simple_repeat Simple_repeat 1 55 0 1952 150 7 3 chrX 105951807 105952101 -56647829 - AluJb SINE Alu -17 295 1 804 285 59 80 chrX 105952580 105953141 -56646789 + L2 LINE L2 2256 2804 -510 531 0 0 0 chrX 105953167 105953226 -56646704 + (CATATA)n Simple_repeat Simple_repeat 3 61 0 189 94 0 0 chrX 105953226 105953258 -56646672 + (TG)n Simple_repeat Simple_repeat 2 33 0 325 183 108 11 chrX 105953517 105953610 -56646320 - L1ME4a LINE L1 -1 6120 6019 210 268 206 10 chrX 105953688 105953785 -56646145 + L2 LINE L2 3137 3252 -20 21 36 0 0 chrX 105954512 105954540 -56645390 + AT_rich Low_complexity Low_complexity 1 28 0 598 219 88 0 chrX 105954651 105954811 -56645119 + MER104 DNA MER2_type 3 176 -4 431 226 104 98 chrX 105954819 105954983 -56644947 + MIR SINE MIR 97 261 -1 205 288 30 61 chrX 105954970 105955036 -56644894 + L2 LINE L2 3127 3190 -82 * 266 45 15 194 chrX 105955490 105955557 -56644373 - MIR3 SINE MIR -17 191 137 300 336 97 19 chrX 105955568 105955827 -56644103 - L3 LINE CR1 -135 1442 1164 429 325 8 0 chrX 105955925 105956051 -56643879 - L3 LINE CR1 -416 1161 1035 1942 165 7 0 chrX 105956599 105956902 -56643028 + AluSx SINE Alu 1 305 -7 619 201 54 13 chrX 105957311 105957460 -56642470 - MER103 DNA DNA -7 159 5 315 0 0 0 chrX 105958399 105958434 -56641496 + (TG)n Simple_repeat Simple_repeat 1 35 0 228 67 0 0 chrX 105958434 105958464 -56641466 + (GA)n Simple_repeat Simple_repeat 2 31 0 623 133 36 152 chrX 105958791 105958956 -56640974 + L1MCa LINE L1 661 806 -5620 220 327 79 0 chrX 105959625 105959726 -56640204 - L2 LINE L2 -39 3274 3166 1106 264 55 3 chrX 105959745 105960037 -56639893 - L2 LINE L2 -1 3312 3006 2245 116 51 20 chrX 105960579 105960932 -56638998 - THE1B LTR MaLR 0 364 1 850 188 167 0 chrX 105961042 105961228 -56638702 + MIR SINE MIR 46 262 0 1947 199 39 90 chrX 105961577 105962135 -56637795 - MLT1F1 LTR MaLR -12 555 1 491 81 0 14 chrX 105962657 105962731 -56637199 + (TTCC)n Simple_repeat Simple_repeat 1 73 0 6692 60 16 0 chrX 105962736 105963886 -56636044 - L1PA8A LINE L1 -2 6129 4972 784 59 0 84 chrX 105963886 105964005 -56635925 + L1P3 LINE L1 11 119 -5756 699 283 11 6 chrX 105964178 105964355 -56635575 + MIR SINE MIR 48 225 -37 489 265 43 9 chrX 105964494 105964644 -56635286 - MIR SINE MIR -62 146 19 2388 89 0 3 chrX 105965211 105965514 -56634416 + AluSx SINE Alu 1 302 -10 183 80 0 0 chrX 105966488 105966513 -56633417 + (TG)n Simple_repeat Simple_repeat 2 26 0 477 279 15 22 chrX 105967146 105967282 -56632648 + MIR SINE MIR 16 150 -58 2278 74 0 11 chrX 105967287 105967594 -56632336 - AluSc SINE Alu 0 304 1 257 242 45 15 chrX 105967996 105968062 -56631868 + L2 LINE L2 3194 3261 -11 237 313 30 10 chrX 105969327 105969426 -56630504 + L2 LINE L2 2955 3055 -217 662 238 14 7 chrX 105969705 105969848 -56630082 - MIR3 SINE MIR -35 173 30 231 335 13 89 chrX 105969866 105970024 -56629906 + L2 LINE L2 3114 3259 -13 290 259 101 0 chrX 105970905 105971044 -56628886 + L1MC4 LINE L1 7741 7893 -149 1153 130 54 0 chrX 105971059 105971244 -56628686 + L1MB4 LINE L1 5980 6174 -6 279 0 0 0 chrX 105971245 105971276 -56628654 + (CA)n Simple_repeat Simple_repeat 2 32 0 685 134 143 25 chrX 105971343 105971462 -56628468 + FLAM_C SINE Alu 1 133 0 2046 119 14 0 chrX 105971957 105972234 -56627696 + AluSq SINE Alu 1 281 -32 952 72 7 7 chrX 105972234 105972373 -56627557 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 228 111 0 0 chrX 105972986 105973022 -56626908 + (GA)n Simple_repeat Simple_repeat 2 37 0 467 202 32 81 chrX 105973298 105973422 -56626508 - MIR3 SINE MIR -26 182 65 766 283 18 6 chrX 105974534 105974700 -56625230 + MER91A DNA MER1_type 2 169 -27 266 271 43 57 chrX 105974710 105974780 -56625150 + MER91A DNA MER1_type 116 184 -12 1268 219 47 3 chrX 105977850 105978169 -56621761 - L1M4 LINE L1 -1085 5061 4729 2295 94 0 44 chrX 105978372 105978692 -56621238 + AluSx SINE Alu 1 306 -6 507 195 32 57 chrX 105979068 105979191 -56620739 + MER5B DNA MER1_type 53 172 -6 201 333 16 0 chrX 105980019 105980082 -56619848 - L2 LINE L2 -5 3267 3204 240 59 0 0 chrX 105980173 105980207 -56619723 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 8996 27 1 1 chrX 105980244 105982078 -56617852 - L1PA4 LINE L1 0 6155 4322 435 282 43 8 chrX 105982341 105982458 -56617472 - MIR SINE MIR -22 240 120 207 229 0 21 chrX 105982650 105982698 -56617232 - MIR SINE MIR -12 250 204 777 288 34 25 chrX 105982717 105982953 -56616977 - MIR SINE MIR -2 260 23 309 182 204 0 chrX 105983893 105983981 -56615949 + MER103 DNA DNA 14 119 -47 531 250 154 6 chrX 105983997 105984153 -56615777 + MER5A DNA MER1_type 11 189 0 1932 154 7 7 chrX 105984305 105984610 -56615320 + AluJb SINE Alu 1 305 -7 708 256 110 40 chrX 105986012 105986239 -56613691 - MIR SINE MIR 0 262 20 1370 234 42 51 chrX 105986512 105986964 -56612966 + L2 LINE L2 2866 3313 0 727 277 56 4 chrX 105987320 105987551 -56612379 + MIR SINE MIR 8 250 -12 455 311 154 55 chrX 105990433 105990777 -56609153 - L2 LINE L2 -5 3267 2890 513 166 33 126 chrX 105991037 105991188 -56608742 - MIR SINE MIR 0 262 126 853 249 27 9 chrX 105991597 105991822 -56608108 - Charlie8 DNA MER1_type -2141 276 48 607 188 68 88 chrX 105991827 105991921 -56608009 + MIR SINE MIR 73 163 -99 2295 83 6 45 chrX 105991921 105992235 -56607695 + AluSx SINE Alu 1 302 -10 607 188 68 88 chrX 105992235 105992332 -56607598 + MIR SINE MIR 163 260 -2 1657 31 10 0 chrX 105992763 105992958 -56606972 - AluYb8 SINE Alu -4 314 118 466 204 0 11 chrX 105992973 105993061 -56606869 - MER5B DNA MER1_type 0 178 92 247 259 51 66 chrX 105993190 105993362 -56606568 + MIR SINE MIR 34 201 -61 428 352 52 10 chrX 105994737 105994930 -56605000 - MIR3 SINE MIR -6 202 2 454 288 52 48 chrX 105996553 105996796 -56603134 - MIR SINE MIR -2 260 17 314 220 17 0 chrX 105996833 105996892 -56603038 + L2 LINE L2 3207 3266 -6 564 180 0 0 chrX 105996892 105996981 -56602949 + AluSg/x SINE Alu 204 292 -18 261 250 222 0 chrX 105997501 105997609 -56602321 + L2 LINE L2 3178 3309 -4 298 283 237 23 chrX 105997816 105997993 -56601937 + MIR SINE MIR 23 237 -25 205 152 0 0 chrX 105999300 105999333 -56600597 - MIR SINE MIR -28 234 202 1058 231 64 4 chrX 105999355 105999589 -56600341 - MIR SINE MIR -3 259 12 512 247 258 5 chrX 105999822 106000008 -56599922 - MIR SINE MIR -2 260 28 439 321 74 16 chrX 106001155 106001345 -56598585 + L2 LINE L2 3068 3268 -4 180 0 0 0 chrX 106001346 106001366 -56598564 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 224 246 0 33 chrX 106002829 106002890 -56597040 + L3 LINE CR1 1508 1566 -11 297 89 0 0 chrX 106003451 106003496 -56596434 + (CA)n Simple_repeat Simple_repeat 1 45 0 217 296 28 35 chrX 106003894 106004036 -56595894 + CT-rich Low_complexity Low_complexity 1 141 0 181 339 0 0 chrX 106004793 106004855 -56595075 - L3 LINE CR1 -8 1569 1508 4719 261 60 105 chrX 106005194 106005927 -56594003 - L2 LINE L2 0 3313 2548 2502 88 7 0 chrX 106005927 106006235 -56593695 - AluSx SINE Alu -2 310 1 4719 261 60 105 chrX 106006235 106007288 -56592642 - L2 LINE L2 -765 2548 1449 7744 23 26 0 chrX 106007288 106008652 -56591278 - L1PA4 LINE L1 -3 6152 4772 4719 261 60 105 chrX 106008652 106008887 -56591043 - L2 LINE L2 -1864 1449 1205 2251 109 6 3 chrX 106008887 106009199 -56590731 + AluSq SINE Alu 1 313 0 4719 261 60 105 chrX 106009199 106009938 -56589992 - L2 LINE L2 -2108 1205 708 3930 133 26 67 chrX 106009938 106010623 -56589307 + L1MB3 LINE L1 5451 6104 -79 1845 170 11 3 chrX 106010623 106010905 -56589025 + AluJb SINE Alu 1 284 -28 3930 133 26 67 chrX 106010905 106010976 -56588954 + L1MB3 LINE L1 6104 6176 -7 4719 261 60 105 chrX 106010976 106011563 -56588367 - L2 LINE L2 -2605 708 96 1472 152 0 74 chrX 106011767 106012036 -56587894 + AluJb SINE Alu 1 249 -63 188 35 35 0 chrX 106012057 106012086 -56587844 + (CAA)n Simple_repeat Simple_repeat 1 30 0 738 255 74 37 chrX 106012119 106012362 -56587568 + MIR SINE MIR 11 262 0 485 245 238 0 chrX 106012750 106012897 -56587033 + MER5A DNA MER1_type 7 188 -1 370 183 158 33 chrX 106015039 106015159 -56584771 + L2 LINE L2 3179 3313 0 2362 99 0 10 chrX 106016120 106016434 -56583496 + AluSx SINE Alu 1 311 -1 2490 91 0 0 chrX 106017203 106017511 -56582419 + AluSx SINE Alu 1 308 -4 261 265 171 26 chrX 106018464 106018581 -56581349 - L2 LINE L2 0 3313 3180 645 290 34 29 chrX 106018696 106018903 -56581027 - MIR SINE MIR -21 241 34 872 261 11 15 chrX 106019957 106020217 -56579713 - MIR SINE MIR -1 261 3 2165 151 0 0 chrX 106020712 106021023 -56578907 + AluSx SINE Alu 1 311 -1 183 341 171 28 chrX 106021137 106021313 -56578617 - L3b LINE CR1 -59 1524 1324 210 71 0 0 chrX 106021631 106021659 -56578271 + (CAG)n Simple_repeat Simple_repeat 3 30 0 344 22 22 0 chrX 106022521 106022566 -56577364 + (CA)n Simple_repeat Simple_repeat 2 47 0 405 141 0 0 chrX 106022719 106022790 -56577140 + (TC)n Simple_repeat Simple_repeat 1 71 0 1362 252 93 40 chrX 106023370 106023942 -56575988 - L2 LINE L2 -2 3311 2704 404 217 14 120 chrX 106025426 106025532 -56574398 + MIR3 SINE MIR 54 142 -95 189 280 47 56 chrX 106025532 106025639 -56574291 - MER5A DNA MER1_type 0 189 84 259 241 0 0 chrX 106025854 106025912 -56574018 - L2 LINE L2 -215 3057 3000 340 214 11 28 chrX 106026077 106026259 -56573671 + (CA)n Simple_repeat Simple_repeat 1 179 0 275 226 151 0 chrX 106026555 106026661 -56573269 + L2 LINE L2 3009 3130 -183 523 172 24 107 chrX 106026676 106026797 -56573133 - L1MD2 LINE L1 -10 6349 6244 2178 130 0 9 chrX 106026797 106027112 -56572818 + AluSx SINE Alu 1 312 0 523 172 24 107 chrX 106027112 106027159 -56572771 - L1MD2 LINE L1 -115 6244 6195 272 235 29 0 chrX 106027160 106027228 -56572702 - L1MD2 LINE L1 -217 6142 6073 * 586 185 0 0 chrX 106027223 106027331 -56572599 + L1MA2 LINE L1 6197 6304 0 2456 139 52 80 chrX 106027338 106027484 -56572446 - L1MD2 LINE L1 -280 6079 5931 1553 196 10 23 chrX 106027484 106027785 -56572145 + AluJo SINE Alu 6 302 -10 2456 139 52 80 chrX 106027785 106028191 -56571739 - L1MD2 LINE L1 -428 5931 5542 650 129 129 36 chrX 106028196 106028335 -56571595 + L2 LINE L2 3161 3312 -1 650 193 34 0 chrX 106028710 106028829 -56571101 - L2 LINE L2 -1 3312 3190 1203 176 5 5 chrX 106029179 106029389 -56570541 - MER82 DNA MER2_type 0 653 444 433 313 58 48 chrX 106029421 106029629 -56570301 + MIR SINE MIR 2 211 -51 310 246 0 0 chrX 106029629 106029690 -56570240 - MER82 DNA MER2_type -570 83 23 225 0 0 0 chrX 106029950 106029975 -56569955 + (A)n Simple_repeat Simple_repeat 1 25 0 2005 147 7 0 chrX 106030076 106030368 -56569562 - AluSx SINE Alu -18 294 1 235 333 0 0 chrX 106030372 106030432 -56569498 - MER5B DNA MER1_type -1 177 118 405 333 0 9 chrX 106030484 106030598 -56569332 + MER5B DNA MER1_type 49 161 -17 261 178 22 0 chrX 106030814 106030859 -56569071 + L2 LINE L2 3267 3312 -1 375 245 29 50 chrX 106032186 106032325 -56567605 - MER5B DNA MER1_type -39 139 4 1016 168 152 15 chrX 106032354 106032551 -56567379 - MER58A DNA MER1_type 0 224 1 409 311 30 15 chrX 106033244 106033379 -56566551 + MIR3 SINE MIR 40 176 -32 897 214 11 11 chrX 106033787 106033965 -56565965 - MER5B DNA MER1_type 0 178 1 1600 226 121 27 chrX 106034286 106034942 -56564988 + L2 LINE L2 2372 3088 -225 2417 94 3 0 chrX 106034944 106035252 -56564678 + AluSx SINE Alu 1 309 -3 3164 124 0 41 chrX 106035252 106035791 -56564139 + L1MA7 LINE L1 5617 6133 -158 746 211 98 16 chrX 106035837 106036031 -56563899 + L2 LINE L2 3104 3313 0 2058 120 28 0 chrX 106036215 106036506 -56563424 + AluSq SINE Alu 1 299 -14 212 362 23 64 chrX 106036551 106036769 -56563161 + MIR SINE MIR 8 216 -46 21 0 0 0 chrX 106036782 106036803 -56563127 + AT_rich Low_complexity Low_complexity 1 21 0 181 245 75 0 chrX 106036978 106037031 -56562899 + L2 LINE L2 3251 3307 -6 195 271 0 0 chrX 106037722 106037770 -56562160 - L2 LINE L2 -2 3311 3264 209 207 0 17 chrX 106038732 106038790 -56561140 + CT-rich Low_complexity Low_complexity 1 57 0 223 339 0 0 chrX 106039731 106039790 -56560140 + L2 LINE L2 3214 3272 0 452 303 65 98 chrX 106039903 106040063 -56559867 - L2 LINE L2 -3 3269 3124 1511 149 0 0 chrX 106040063 106040278 -56559652 + AluJo SINE Alu 93 307 -5 452 303 65 98 chrX 106040278 106040454 -56559476 - L2 LINE L2 -148 3124 2944 1226 118 0 17 chrX 106040583 106040761 -56559169 + AluSg/x SINE Alu 137 311 -1 277 356 25 0 chrX 106040765 106040883 -56559047 + MER20B DNA MER1_type 55 175 -608 433 288 41 29 chrX 106042455 106042625 -56557305 + MER20B DNA MER1_type 1 172 -611 227 241 0 19 chrX 106043843 106043897 -56556033 + L2 LINE L2 3256 3308 -5 384 179 43 57 chrX 106045231 106045371 -56554559 - L1MC5 LINE L1 -22 7939 7802 429 348 77 44 chrX 106046270 106046701 -56553229 - L2 LINE L2 0 3272 2828 921 204 0 0 chrX 106046813 106046985 -56552945 + MER5A DNA MER1_type 18 189 0 720 235 49 0 chrX 106046995 106047157 -56552773 + MER5B DNA MER1_type 3 172 -6 243 326 78 0 chrX 106047244 106047373 -56552557 - L2 LINE L2 -668 2646 2508 258 301 39 0 chrX 106047400 106047503 -56552427 - L2 LINE L2 -896 2418 2312 619 218 0 32 chrX 106047855 106047873 -56552057 - L1MA10 LINE L1 -1 6333 6316 4712 200 32 10 chrX 106047873 106049074 -56550856 - L1ME1 LINE L1 -5 6161 4988 270 0 0 0 chrX 106049074 106049104 -56550826 + (TG)n Simple_repeat Simple_repeat 2 31 0 4712 200 32 10 chrX 106049104 106049207 -56550723 - L1ME1 LINE L1 -1178 4988 4889 396 0 0 0 chrX 106049207 106049251 -56550679 + (TA)n Simple_repeat Simple_repeat 1 44 0 4712 200 32 10 chrX 106049251 106049753 -56550177 - L1ME1 LINE L1 -1277 4889 4322 843 159 0 8 chrX 106049754 106049880 -56550050 + FLAM_C SINE Alu 1 125 -18 383 164 0 0 chrX 106049898 106049959 -56549971 - L1ME1 LINE L1 -1810 4336 4276 33 25 0 0 chrX 106050037 106050077 -56549853 + AT_rich Low_complexity Low_complexity 1 40 0 2132 139 0 3 chrX 106050091 106050394 -56549536 - AluSx SINE Alu -10 302 1 1856 105 0 0 chrX 106050439 106050677 -56549253 - AluSq SINE Alu -75 238 1 1085 178 11 0 chrX 106050677 106050862 -56549068 - MER2 DNA MER2_type -158 187 1 207 350 7 7 chrX 106051991 106052128 -56547802 + CT-rich Low_complexity Low_complexity 2 138 0 871 118 0 39 chrX 106052631 106052758 -56547172 + FLAM_C SINE Alu 6 127 -16 439 292 77 93 chrX 106053282 106053868 -56546062 - L2 LINE L2 -44 3228 2640 1754 171 24 24 chrX 106054835 106055174 -56544756 - MER58B DNA MER1_type -2 339 1 2015 146 7 7 chrX 106056822 106057168 -56542762 + AluJb SINE Alu 1 346 0 592 233 6 56 chrX 106058018 106058198 -56541732 - MER5B DNA MER1_type -1 177 7 565 206 110 114 chrX 106058418 106058566 -56541364 + MIR SINE MIR 24 172 -90 891 93 0 23 chrX 106058566 106058695 -56541235 - FLAM_C SINE Alu -7 126 1 565 206 110 114 chrX 106058695 106058774 -56541156 + MIR SINE MIR 172 250 -12 189 0 0 0 chrX 106059627 106059648 -56540282 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1425 25 0 0 chrX 106059648 106059810 -56540120 - L1PA4 LINE L1 -13 6142 5981 2063 108 0 85 chrX 106059837 106060178 -56539752 + AluSx SINE Alu 1 312 0 821 153 16 0 chrX 106060187 106060311 -56539619 + BC200 scRNA scRNA 2 127 -73 408 40 0 0 chrX 106060312 106060362 -56539568 + (GA)n Simple_repeat Simple_repeat 1 50 0 2303 104 0 0 chrX 106060428 106060727 -56539203 + AluSx SINE Alu 7 305 -7 810 217 7 0 chrX 106060970 106061122 -56538808 - MER63A DNA MER1_type 0 210 58 1895 166 10 0 chrX 106061144 106061446 -56538484 + AluSx SINE Alu 1 305 -7 462 208 16 38 chrX 106061449 106061632 -56538298 + GA-rich Low_complexity Low_complexity 2 180 0 602 183 44 67 chrX 106061827 106062007 -56537923 + MER5B DNA MER1_type 2 177 -1 189 74 0 0 chrX 106063090 106063117 -56536813 + (CAGC)n Simple_repeat Simple_repeat 2 28 0 283 207 18 81 chrX 106063404 106063515 -56536415 + L2 LINE L2 3118 3221 -92 191 294 93 60 chrX 106063623 106063892 -56536038 - L2 LINE L2 -342 2972 2695 1900 136 0 0 chrX 106063900 106064164 -56535766 + AluSx SINE Alu 36 299 -13 755 162 0 22 chrX 106064182 106064289 -56535641 + FLAM_C SINE Alu 11 116 -196 279 0 0 0 chrX 106064289 106064320 -56535610 + (CTA)n Simple_repeat Simple_repeat 1 31 0 755 162 0 22 chrX 106064320 106064348 -56535582 + FLAM_C SINE Alu 116 143 -169 863 79 31 31 chrX 106065573 106065700 -56534230 + FLAM_C SINE Alu 4 130 -3 1169 186 23 41 chrX 106065732 106065952 -56533978 + MER58A DNA MER1_type 9 224 0 263 254 0 0 chrX 106066158 106066225 -56533705 + L2 LINE L2 2571 2637 -677 391 316 13 6 chrX 106066635 106066793 -56533137 - MER103 DNA DNA -7 159 1 2356 85 0 0 chrX 106066865 106067160 -56532770 - AluSx SINE Alu -17 295 1 1661 109 0 88 chrX 106068486 106068611 -56531319 + AluSx SINE Alu 35 169 -136 2314 113 7 0 chrX 106068611 106068912 -56531018 + AluSx SINE Alu 1 303 -9 1661 109 0 88 chrX 106068912 106069081 -56530849 + AluSx SINE Alu 169 305 0 265 241 163 64 chrX 106070826 106070967 -56528963 - L2 LINE L2 0 3313 3159 482 289 23 6 chrX 106072309 106072482 -56527448 + MIR SINE MIR 32 207 -55 2233 95 0 7 chrX 106072515 106072820 -56527110 - AluSq SINE Alu 0 303 1 4527 161 12 42 chrX 106072884 106073596 -56526334 - L1MB8 LINE L1 -6 6172 5491 2138 124 3 10 chrX 106073596 106073895 -56526035 - AluSx SINE Alu -15 297 1 4527 161 12 42 chrX 106073895 106074078 -56525852 - L1MB8 LINE L1 -687 5491 5304 1860 214 14 9 chrX 106074073 106074498 -56525432 - L1MB8 LINE L1 -1292 4854 4428 * 27914 123 3 15 chrX 106074523 106075265 -56524665 - L1PA12 LINE L1 0 6446 5697 2432 97 7 0 chrX 106075265 106075575 -56524355 - AluSx SINE Alu 0 312 1 27914 123 3 15 chrX 106075575 106075587 -56524343 - L1PA12 LINE L1 -749 5697 5686 189 0 0 0 chrX 106075587 106075608 -56524322 + (TTG)n Simple_repeat Simple_repeat 1 21 0 27914 123 3 15 chrX 106075608 106079193 -56520737 - L1PA12 LINE L1 -760 5686 2060 2078 141 0 0 chrX 106079193 106079483 -56520447 - AluSx SINE Alu -22 290 1 27914 123 3 15 chrX 106079483 106079658 -56520272 - L1PA12 LINE L1 -4386 2060 1884 2367 105 3 0 chrX 106079658 106079962 -56519968 - AluSp SINE Alu -8 305 1 27914 123 3 15 chrX 106079962 106081075 -56518855 - L1PA12 LINE L1 -4562 1884 6 24 77 0 0 chrX 106081119 106081171 -56518759 + AT_rich Low_complexity Low_complexity 1 52 0 3253 208 77 90 chrX 106081171 106081277 -56518653 - L1MB8 LINE L1 -1718 4428 4322 2327 91 3 13 chrX 106081277 106081585 -56518345 + AluSx SINE Alu 1 305 -7 3253 208 77 90 chrX 106081585 106081760 -56518170 - L1MB8 LINE L1 -1824 4322 4146 243 0 0 0 chrX 106081760 106081787 -56518143 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3253 208 77 90 chrX 106081787 106082554 -56517376 - L1MB8 LINE L1 -2000 4146 3399 2250 122 6 3 chrX 106082554 106082865 -56517065 - AluSq SINE Alu -1 312 1 3253 208 77 90 chrX 106082865 106083178 -56516752 - L1MB8 LINE L1 -2747 3399 3083 1281 62 0 23 chrX 106083168 106083344 -56516586 - L1MA1 LINE L1 0 6302 6131 * 2789 79 5 8 chrX 106083349 106083727 -56516203 - L1PB1 LINE L1 -2 6149 5773 245 179 0 0 chrX 106083728 106083767 -56516163 + 5S rRNA rRNA 1 39 -82 26 30 0 0 chrX 106083773 106083806 -56516124 + AT_rich Low_complexity Low_complexity 1 33 0 421 133 0 0 chrX 106083807 106083867 -56516063 - AluS SINE Alu -26 283 224 284 154 0 0 chrX 106083869 106083908 -56516022 - Alu SINE Alu -261 40 2 5618 167 51 12 chrX 106083908 106084199 -56515731 - L1P5 LINE L1 -366 5785 5507 2000 112 67 0 chrX 106084199 106084484 -56515446 - AluSg SINE Alu -6 304 1 5618 167 51 12 chrX 106084484 106085808 -56514122 - L1P5 LINE L1 -644 5507 4104 649 118 0 0 chrX 106085785 106085887 -56514043 - L1MA2 LINE L1 -155 6149 6048 * 2569 198 8 68 chrX 106085861 106086008 -56513922 - L1MB8 LINE L1 -3026 3120 2966 2277 105 3 16 chrX 106086008 106086321 -56513609 + AluSq SINE Alu 1 309 -4 2569 198 8 68 chrX 106086321 106086443 -56513487 - L1MB8 LINE L1 -3180 2966 2838 2146 138 0 0 chrX 106086443 106086739 -56513191 + AluSx SINE Alu 1 296 -16 2569 198 8 68 chrX 106086739 106087064 -56512866 - L1MB8 LINE L1 -3308 2838 2571 2285 106 3 3 chrX 106087064 106087376 -56512554 + AluSx SINE Alu 1 312 0 2569 198 8 68 chrX 106087376 106087487 -56512443 - L1MB8 LINE L1 -3575 2571 2455 470 272 150 22 chrX 106087624 106087804 -56512126 + MIR SINE MIR 12 214 -48 189 74 0 0 chrX 106089235 106089262 -56510668 + (GGA)n Simple_repeat Simple_repeat 2 28 0 706 264 47 13 chrX 106090007 106090242 -56509688 + MIR SINE MIR 19 261 -1 2230 119 16 0 chrX 106090399 106090707 -56509223 + AluSx SINE Alu 1 308 -4 2082 153 30 0 chrX 106091316 106091649 -56508281 - MER2 DNA MER2_type -1 343 1 204 180 0 100 chrX 106092850 106092950 -56506980 + (CCCCAG)n Simple_repeat Simple_repeat 5 94 0 569 135 0 10 chrX 106094596 106094700 -56505230 + (CAG)n Simple_repeat Simple_repeat 1 103 0 200 97 32 0 chrX 106095566 106095597 -56504333 + (CAGCC)n Simple_repeat Simple_repeat 2 33 0 204 125 0 0 chrX 106095945 106095977 -56503953 + (CCA)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chrX 106096577 106096611 -56503319 + AT_rich Low_complexity Low_complexity 1 34 0 307 254 144 69 chrX 106097317 106097490 -56502440 - MER91A DNA MER1_type -9 187 2 2085 97 0 42 chrX 106097523 106097834 -56502096 - AluSx SINE Alu -14 298 1 303 288 76 25 chrX 106098190 106098308 -56501622 + L2 LINE L2 3149 3272 0 897 238 90 18 chrX 106099572 106099795 -56500135 - MIR SINE MIR -19 243 5 1710 155 3 42 chrX 106099882 106100192 -56499738 - AluJb SINE Alu -14 298 1 2079 94 24 0 chrX 106100691 106100979 -56498951 - AluSp SINE Alu -18 295 1 1293 176 112 0 chrX 106101303 106101570 -56498360 + AluJo SINE Alu 1 297 -15 288 240 165 40 chrX 106101780 106101960 -56497970 + MIR3 SINE MIR 11 210 -52 21 0 0 0 chrX 106102445 106102466 -56497464 + AT_rich Low_complexity Low_complexity 1 21 0 2102 126 0 0 chrX 106102479 106102788 -56497142 + AluSx SINE Alu 3 311 -1 361 182 0 101 chrX 106102848 106102947 -56496983 - L1MA9 LINE L1 -232 6080 5992 1239 111 0 0 chrX 106103066 106103237 -56496693 - AluSg/x SINE Alu -18 292 122 2040 100 0 43 chrX 106103252 106103553 -56496377 - AluSq SINE Alu -25 288 1 203 0 37 0 chrX 106103583 106103610 -56496320 + (TTTTTA)n Simple_repeat Simple_repeat 1 28 0 8081 18 0 1 chrX 106103611 106105281 -56494649 - L1HS LINE L1 -3 6152 4484 610 259 7 7 chrX 106105808 106105955 -56493975 + MIR3 SINE MIR 19 165 -43 1973 106 0 48 chrX 106106478 106106790 -56493140 + AluSx SINE Alu 1 297 -15 1775 78 0 0 chrX 106106980 106107210 -56492720 + AluY SINE Alu 68 297 -14 185 318 55 73 chrX 106107673 106107783 -56492147 + L2 LINE L2 3197 3304 -9 2443 62 0 3 chrX 106107783 106108091 -56491839 + AluY SINE Alu 1 307 -4 1775 138 7 16 chrX 106108103 106108408 -56491522 + AluJb SINE Alu 2 303 -9 306 0 0 0 chrX 106108423 106108457 -56491473 + (A)n Simple_repeat Simple_repeat 1 34 0 1804 186 5 62 chrX 106108834 106108869 -56491061 - MLT2C1 LTR ERVL 0 397 362 2151 102 3 13 chrX 106108869 106109184 -56490746 + AluSq SINE Alu 1 312 -1 1804 186 5 62 chrX 106109184 106109567 -56490363 - MLT2C1 LTR ERVL -35 362 3 827 165 8 0 chrX 106109567 106109694 -56490236 + FLAM_A SINE Alu 1 128 -5 2492 57 0 16 chrX 106110202 106110518 -56489412 - AluY SINE Alu 0 311 1 2091 105 0 63 chrX 106110532 106110865 -56489065 - AluSq SINE Alu -1 312 1 2020 107 0 17 chrX 106110933 106111266 -56488664 + AluSq SINE Alu 2 329 0 1279 166 153 0 chrX 106111445 106111686 -56488244 - AluSg1 SINE Alu -31 278 1 5012 112 30 87 chrX 106111732 106111913 -56488017 - Tigger1 DNA MER2_type 0 2418 2228 2182 184 31 14 chrX 106111913 106112332 -56487598 - MSTB LTR MaLR 0 426 1 5012 112 30 87 chrX 106112332 106112361 -56487569 - Tigger1 DNA MER2_type -190 2228 2199 2103 132 0 0 chrX 106112361 106112664 -56487266 + AluSx SINE Alu 1 303 -9 5012 112 30 87 chrX 106112664 106112944 -56486986 - Tigger1 DNA MER2_type -219 2199 1905 2411 74 0 0 chrX 106112944 106113253 -56486677 - AluY SINE Alu -2 309 1 5012 112 30 87 chrX 106113253 106113677 -56486253 - Tigger1 DNA MER2_type -513 1905 1554 725 222 48 68 chrX 106113799 106113951 -56485979 + MLT1H1 LTR MaLR 253 385 -170 964 236 0 0 chrX 106113951 106114125 -56485805 - MER45A DNA AcHobo -4 174 1 725 222 48 68 chrX 106114125 106114252 -56485678 + MLT1H1 LTR MaLR 385 513 -42 10362 105 13 58 chrX 106114263 106115042 -56484888 - Tigger1 DNA MER2_type -851 1567 898 2410 42 0 0 chrX 106115042 106115328 -56484602 - AluY SINE Alu -6 305 20 10362 105 13 58 chrX 106115328 106116188 -56483742 - Tigger1 DNA MER2_type -1520 898 1 213 41 20 82 chrX 106116257 106116306 -56483624 + (TTTAA)n Simple_repeat Simple_repeat 5 50 0 280 325 90 27 chrX 106116387 106116765 -56483165 + L2 LINE L2 2611 3088 -184 484 251 58 38 chrX 106116793 106117012 -56482918 + MLT1J2 LTR MaLR 8 272 -239 1435 227 70 108 chrX 106117237 106117421 -56482509 + L2 LINE L2 2625 2814 -499 1963 135 0 0 chrX 106117421 106117717 -56482213 - AluJb SINE Alu -12 300 5 1435 227 70 108 chrX 106117717 106117736 -56482194 + L2 LINE L2 2814 2832 -481 1763 111 48 11 chrX 106117736 106118027 -56481903 - AluSx SINE Alu 0 301 1 1435 227 70 108 chrX 106118027 106118533 -56481397 + L2 LINE L2 2832 3313 0 297 229 0 16 chrX 106118559 106118620 -56481310 + L2 LINE L2 3206 3265 -7 279 228 168 30 chrX 106118821 106118922 -56481008 + MIR3 SINE MIR 91 205 -3 184 163 50 113 chrX 106122013 106122093 -56477837 - L3 LINE CR1 -198 1379 1305 324 0 0 0 chrX 106122149 106122185 -56477745 + (CA)n Simple_repeat Simple_repeat 2 37 0 506 221 118 7 chrX 106122236 106122372 -56477558 + MIR SINE MIR 103 253 -9 22 80 0 0 chrX 106122582 106122632 -56477298 + AT_rich Low_complexity Low_complexity 1 50 0 886 200 0 0 chrX 106122632 106122792 -56477138 - FAM SINE Alu -17 168 9 850 238 93 7 chrX 106122809 106123078 -56476852 - L1ME LINE L1 -299 5822 5531 22 0 0 0 chrX 106123083 106123105 -56476825 + AT_rich Low_complexity Low_complexity 1 22 0 2133 82 14 7 chrX 106123108 106123399 -56476531 - AluSq SINE Alu -20 293 1 475 307 49 6 chrX 106123399 106123562 -56476368 - MIR SINE MIR -1 261 92 2514 53 0 0 chrX 106124551 106124852 -56475078 + AluY SINE Alu 1 301 -10 300 240 27 13 chrX 106124901 106124976 -56474954 + L1ME4a LINE L1 5983 6058 -63 2233 105 0 10 chrX 106125055 106125368 -56474562 + AluSx SINE Alu 1 310 -2 2120 59 3 62 chrX 106125605 106125942 -56473988 - AluY SINE Alu 0 311 1 2327 51 0 32 chrX 106126239 106126550 -56473380 - AluY SINE Alu -9 302 2 1445 135 57 4 chrX 106126856 106127101 -56472829 - AluJo SINE Alu -16 296 39 1464 70 0 5 chrX 106127189 106127374 -56472556 + AluSc SINE Alu 1 184 -125 712 191 0 8 chrX 106127419 106127550 -56472380 + FLAM_A SINE Alu 4 133 0 299 536 33 0 chrX 106127697 106127858 -56472072 + AluJ/monomer SINE Alu 1 39 -263 1684 159 13 3 chrX 106127900 106128201 -56471729 - AluSx SINE Alu -8 304 1 730 194 0 8 chrX 106128348 106128482 -56471448 - FLAM_A SINE Alu 0 133 1 30 27 0 0 chrX 106128880 106128917 -56471013 + AT_rich Low_complexity Low_complexity 1 37 0 293 300 122 0 chrX 106129076 106129166 -56470764 + L2 LINE L2 3168 3268 -4 288 224 0 35 chrX 106129640 106129698 -56470232 + MER2 DNA MER2_type 2 57 -288 219 36 0 0 chrX 106129705 106129733 -56470197 + (TA)n Simple_repeat Simple_repeat 2 29 0 1940 112 7 27 chrX 106129733 106129887 -56470043 - AluSx SINE Alu -24 288 141 2109 117 3 0 chrX 106129887 106130186 -56469744 - AluSx SINE Alu -8 304 5 1940 112 7 27 chrX 106130186 106130325 -56469605 - AluSx SINE Alu -171 141 1 589 148 109 70 chrX 106130368 106130496 -56469434 - AluJo SINE Alu -178 134 2 1958 116 0 7 chrX 106130505 106130816 -56469114 - AluSx SINE Alu 0 309 1 1376 128 52 0 chrX 106130816 106131027 -56468903 + MER2 DNA MER2_type 122 343 -2 319 200 0 58 chrX 106184093 106184213 -56415717 + T-rich Low_complexity Low_complexity 2 114 0 453 294 37 37 chrX 106184943 106185130 -56414800 + MIR SINE MIR 75 261 -1 619 220 94 31 chrX 106185933 106186124 -56413806 + MIR SINE MIR 56 258 -4 896 210 15 25 chrX 106186276 106186476 -56413454 + Charlie8 DNA MER1_type 1 198 -2219 228 137 0 59 chrX 106187435 106187486 -56412444 + (GGAGAA)n Simple_repeat Simple_repeat 6 53 0 510 17 0 0 chrX 106187870 106187929 -56412001 + (GA)n Simple_repeat Simple_repeat 1 59 0 297 183 0 0 chrX 106187956 106188016 -56411914 + GA-rich Low_complexity Low_complexity 2 61 0 3662 124 26 10 chrX 106189017 106189599 -56410331 - L1PA13 LINE L1 -6 6157 5567 769 200 32 7 chrX 106189599 106189754 -56410176 + L1P LINE L1 4939 5097 -1049 690 303 70 35 chrX 106189897 106190708 -56409222 - L1M4b LINE L1 -4573 2549 1710 284 299 45 27 chrX 106190687 106190908 -56409022 - L1M4b LINE L1 -4945 1478 1246 * 8995 113 2 0 chrX 106190935 106192170 -56407760 + L1P LINE L1 11 1248 -4898 401 335 3 28 chrX 106192452 106192682 -56407248 + CT-rich Low_complexity Low_complexity 1 224 0 326 296 126 25 chrX 106194507 106194666 -56405264 - L2 LINE L2 -4 3309 3135 1234 209 30 0 chrX 106194881 106195178 -56404752 - Charlie4a DNA MER1_type -170 338 33 1418 169 17 0 chrX 106195179 106195410 -56404520 - AluSq SINE Alu -12 301 67 2245 122 0 6 chrX 106196603 106196915 -56403015 + AluSx SINE Alu 1 310 -2 749 260 83 29 chrX 106197575 106197817 -56402113 - MIR SINE MIR -1 261 7 381 333 105 8 chrX 106198732 106198990 -56400940 + L2 LINE L2 2538 2820 -494 291 182 117 13 chrX 106199019 106199096 -56400834 - MER53 DNA DNA -4 185 101 220 264 87 124 chrX 106199328 106199627 -56400303 + L2 LINE L2 2985 3272 0 230 180 0 98 chrX 106199636 106199697 -56400233 + L2 LINE L2 3141 3195 -77 230 323 83 50 chrX 106199724 106200120 -56399810 - L2 LINE L2 -42 3230 2816 1265 181 10 70 chrX 106200164 106200416 -56399514 + L1MB8 LINE L1 5883 6115 -63 2123 108 7 0 chrX 106200416 106200715 -56399215 - AluSx SINE Alu 0 301 1 1265 181 10 70 chrX 106200715 106200775 -56399155 + L1MB8 LINE L1 6115 6177 -1 912 123 8 0 chrX 106200785 106200915 -56399015 + FLAM_C SINE Alu 2 132 -1 561 340 10 28 chrX 106200924 106201215 -56398715 - L2 LINE L2 -619 2695 2410 301 296 39 108 chrX 106201775 106201978 -56397952 + MER5A DNA MER1_type 1 189 0 255 262 0 16 chrX 106202338 106202399 -56397531 + L2 LINE L2 3250 3309 -4 1142 302 48 19 chrX 106202645 106203233 -56396697 - L2 LINE L2 0 3313 2711 180 77 0 0 chrX 106203235 106203261 -56396669 + (TG)n Simple_repeat Simple_repeat 1 26 0 685 139 0 41 chrX 106203263 106203385 -56396545 - AluJb SINE Alu -194 118 2 369 200 178 44 chrX 106203385 106203520 -56396410 - L2 LINE L2 -599 2715 2563 421 184 0 0 chrX 106203531 106203607 -56396323 - MIR3 SINE MIR -52 156 81 2131 106 51 0 chrX 106204439 106204732 -56395198 - AluSx SINE Alu -4 308 1 477 224 149 0 chrX 106204886 106205020 -56394910 + MIR3 SINE MIR 37 190 -18 767 257 2 71 chrX 106205037 106205282 -56394648 - MIR SINE MIR -27 235 16 2062 176 8 90 chrX 106206670 106207192 -56392738 + L1MC4a LINE L1 5566 6044 -1764 1040 288 126 34 chrX 106207236 106207723 -56392207 - L2 LINE L2 -183 3089 2570 1020 123 43 0 chrX 106207723 106207886 -56392044 + MER46A DNA MER2_type 1 170 -66 435 309 173 39 chrX 106207886 106208558 -56391372 - L2 LINE L2 -1034 2280 1519 371 317 28 14 chrX 106209283 106209428 -56390502 + MIR3 SINE MIR 30 176 -32 2340 94 0 3 chrX 106209445 106209742 -56390188 - AluY SINE Alu -15 296 1 1846 140 3 40 chrX 106209746 106210068 -56389862 - AluJb SINE Alu -2 310 1 5663 177 22 15 chrX 106210068 106211095 -56388835 - L1MC1 LINE L1 -8 6605 5587 1929 130 25 0 chrX 106211095 106211371 -56388559 + AluJb SINE Alu 12 294 -18 5663 177 22 15 chrX 106211371 106211414 -56388516 - L1MC1 LINE L1 -1026 5587 5546 2105 131 0 10 chrX 106211414 106211711 -56388219 - AluJb SINE Alu -18 294 1 5663 177 22 15 chrX 106211711 106212011 -56387919 - L1MC1 LINE L1 -1067 5546 5221 4885 189 21 44 chrX 106212040 106212578 -56387352 - L1MC1 LINE L1 -2658 3768 3219 1646 132 3 135 chrX 106212578 106212926 -56387004 - AluJo SINE Alu 0 302 1 4885 189 21 44 chrX 106212926 106214264 -56385666 - L1MC1 LINE L1 -3207 3219 1935 246 108 0 0 chrX 106214264 106214301 -56385629 - tRNA-Lys-AAG tRNA tRNA -39 37 1 1631 167 0 0 chrX 106214301 106214582 -56385348 + L1PA16 LINE L1 5791 6071 -95 2081 132 74 53 chrX 106214641 106214928 -56385002 - L1MC1 LINE L1 -4523 1903 1623 2193 85 41 7 chrX 106214928 106215244 -56384686 - AluY SINE Alu 0 311 1 2081 132 74 53 chrX 106215244 106215603 -56384327 - L1MC1 LINE L1 -4803 1623 1154 453 36 0 0 chrX 106215605 106215660 -56384270 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 302 252 28 47 chrX 106215660 106215704 -56384226 - L1M2 LINE L1 -4769 2080 2037 2335 98 3 9 chrX 106215704 106216019 -56383911 - AluSp SINE Alu 0 313 1 302 252 28 47 chrX 106216019 106216081 -56383849 - L1M2 LINE L1 -4812 2037 1976 1486 142 122 28 chrX 106216085 106216339 -56383591 + AluJb SINE Alu 13 290 -22 4910 130 41 133 chrX 106216339 106216656 -56383274 - L1MC1 LINE L1 -5297 1129 784 2309 115 3 3 chrX 106216656 106216968 -56382962 - AluSx SINE Alu 0 312 1 4910 130 41 133 chrX 106216968 106217047 -56382883 - L1MC1 LINE L1 -5642 784 699 2268 108 7 3 chrX 106217047 106217344 -56382586 - AluSx SINE Alu -14 298 1 4910 130 41 133 chrX 106217344 106217403 -56382527 - L1MC1 LINE L1 -5727 699 636 527 98 0 24 chrX 106217403 106217485 -56382445 + MADE1 DNA Mariner 1 80 0 4910 130 41 133 chrX 106217485 106217778 -56382152 - L1MC1 LINE L1 -5790 636 535 1942 146 13 7 chrX 106217778 106217951 -56381979 - AluJb SINE Alu -8 304 127 210 37 0 0 chrX 106217951 106217978 -56381952 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1942 146 13 7 chrX 106217978 106218106 -56381824 - AluJb SINE Alu -185 127 1 4910 130 41 133 chrX 106218106 106218592 -56381338 - L1MC1 LINE L1 -5891 535 6 534 305 30 0 chrX 106218606 106218737 -56381193 + L2 LINE L2 3122 3256 -16 448 157 204 82 chrX 106218824 106218971 -56380959 + L2 LINE L2 3149 3313 0 294 29 0 0 chrX 106219740 106219775 -56380155 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1542 239 84 25 chrX 106220679 106221155 -56378775 + MLT1J LTR MaLR 7 510 -1 373 324 9 0 chrX 106221362 106221467 -56378463 + L2 LINE L2 3157 3262 -10 2251 103 0 0 chrX 106221471 106221752 -56378178 + AluSx SINE Alu 1 281 -31 267 103 0 0 chrX 106221928 106221967 -56377963 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 2332 106 0 3 chrX 106221970 106222273 -56377657 - AluSg SINE Alu -8 302 1 2420 104 0 0 chrX 106222279 106222587 -56377343 - AluSg SINE Alu -2 308 1 2099 137 3 0 chrX 106222587 106222887 -56377043 - AluSx SINE Alu -11 301 1 2104 292 131 12 chrX 106222896 106223996 -56375934 - L2 LINE L2 -18 3295 2065 183 80 0 0 chrX 106224093 106224118 -56375812 + (CA)n Simple_repeat Simple_repeat 2 26 0 410 291 85 48 chrX 106224398 106224587 -56375343 + L2 LINE L2 3077 3272 0 568 213 7 44 chrX 106224630 106224766 -56375164 + MER5B DNA MER1_type 47 177 -1 372 307 13 13 chrX 106224835 106224988 -56374942 + MIR3 SINE MIR 56 208 0 2088 124 0 0 chrX 106225526 106225801 -56374129 + AluSx SINE Alu 1 275 -37 738 20 10 20 chrX 106225809 106225911 -56374019 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 2125 107 21 0 chrX 106225911 106226200 -56373730 + AluSg SINE Alu 2 296 -14 339 25 0 0 chrX 106226200 106226240 -56373690 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 526 276 22 8 chrX 106226518 106226652 -56373278 - MIR3 SINE MIR -38 170 35 1118 152 5 42 chrX 106227195 106227412 -56372518 + L1MB3 LINE L1 5975 6183 0 335 311 118 19 chrX 106227529 106227690 -56372240 - MER5A DNA MER1_type -6 183 7 266 296 106 28 chrX 106227736 106227915 -56372015 + L2 LINE L2 2563 2755 -559 834 222 10 43 chrX 106228202 106228409 -56371521 + MIR SINE MIR 63 262 0 2464 86 3 0 chrX 106228720 106229021 -56370909 - AluSq SINE Alu -11 302 1 462 132 113 47 chrX 106229254 106229360 -56370570 - L1MA8 LINE L1 0 6291 6179 24 0 0 0 chrX 106229463 106229487 -56370443 + GC_rich Low_complexity Low_complexity 1 24 0 270 232 49 24 chrX 106229624 106229706 -56370224 + MIR SINE MIR 82 165 -97 1810 147 10 29 chrX 106230633 106230945 -56368985 + AluJo SINE Alu 1 306 -6 532 260 78 7 chrX 106231832 106232043 -56367887 + MIR SINE MIR 24 252 -10 321 71 0 0 chrX 106236252 106236294 -56363636 + 5S rRNA rRNA 1 42 -79 470 273 187 15 chrX 106236351 106236549 -56363381 - MIR SINE MIR 0 262 31 2262 88 0 3 chrX 106237341 106237651 -56362279 + AluSq SINE Alu 1 309 0 204 97 0 0 chrX 106239766 106239797 -56360133 + (CAATT)n Simple_repeat Simple_repeat 3 33 0 198 0 0 0 chrX 106243191 106243213 -56356717 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 263 355 19 0 chrX 106244253 106244360 -56355570 + MIR SINE MIR 39 147 -61 23 0 0 0 chrX 106244422 106244445 -56355485 + AT_rich Low_complexity Low_complexity 1 23 0 440 318 40 8 chrX 106244966 106245092 -56354838 + L2 LINE L2 3178 3307 -6 681 260 46 41 chrX 106246989 106247208 -56352722 - MIR SINE MIR -12 250 31 440 273 20 80 chrX 106248238 106248509 -56351421 + MIR3 SINE MIR 8 258 -4 329 165 0 63 chrX 106248446 106248525 -56351405 + L2 LINE L2 3240 3313 0 * 441 240 27 112 chrX 106249689 106249747 -56350183 + MIR SINE MIR 33 94 -168 1998 138 7 13 chrX 106249747 106250051 -56349879 + AluJb SINE Alu 1 302 -10 441 240 27 112 chrX 106250051 106250180 -56349750 + MIR SINE MIR 94 204 -58 620 259 112 43 chrX 106251714 106251966 -56347964 - MIR SINE MIR 0 262 6 317 314 17 42 chrX 106252174 106252292 -56347638 + MIR SINE MIR 23 137 -71 591 310 11 16 chrX 106252826 106253010 -56346920 - MIR3 SINE MIR -23 185 3 451 263 137 41 chrX 106253083 106253278 -56346652 - MIR3 SINE MIR -19 243 34 515 276 115 6 chrX 106253439 106253595 -56346335 - MIR3 SINE MIR -16 192 20 302 146 0 0 chrX 106254630 106254678 -56345252 - L2 LINE L2 -4 3309 3262 278 229 19 48 chrX 106255335 106255440 -56344490 - MIR3 SINE MIR -104 104 3 201 213 0 0 chrX 106256293 106256340 -56343590 + (CA)n Simple_repeat Simple_repeat 1 47 0 734 272 4 60 chrX 106256892 106257160 -56342770 - MIR SINE MIR -6 256 8 2417 80 0 0 chrX 106257233 106257533 -56342397 + AluSc SINE Alu 2 301 -8 228 137 0 59 chrX 106258756 106258807 -56341123 + (GGAGAA)n Simple_repeat Simple_repeat 6 53 0 454 237 144 29 chrX 106259668 106259807 -56340123 - MIR3 SINE MIR -6 202 48 1050 160 0 45 chrX 106260672 106260872 -56339058 + AluSg/x SINE Alu 120 310 0 246 206 0 0 chrX 106262753 106262821 -56337109 + (CA)n Simple_repeat Simple_repeat 2 69 0 227 309 0 44 chrX 106263969 106264037 -56335893 - L2 LINE L2 -1 3312 3248 684 268 36 0 chrX 106264514 106264682 -56335248 + MIR3 SINE MIR 28 201 -7 189 221 39 125 chrX 106265054 106265158 -56334772 + MIR SINE MIR 122 216 -46 2164 122 20 0 chrX 106265406 106265532 -56334398 + AluSx SINE Alu 1 123 -189 333 0 0 0 chrX 106265532 106265569 -56334361 + (CA)n Simple_repeat Simple_repeat 2 38 0 2164 122 20 0 chrX 106265569 106265746 -56334184 + AluSx SINE Alu 123 310 -2 834 195 0 0 chrX 106265805 106265933 -56333997 - FLAM_C SINE Alu -4 129 2 1040 147 0 0 chrX 106266351 106266494 -56333436 + FAM SINE Alu 4 146 -39 2336 96 3 16 chrX 106270249 106270561 -56329369 - AluSg SINE Alu -2 308 1 905 70 78 0 chrX 106271151 106271280 -56328650 + MER85 DNA T2_type 1 139 0 299 313 16 31 chrX 106271558 106271686 -56328244 + L3b LINE CR1 1345 1470 -113 383 162 15 0 chrX 106272764 106272832 -56327098 + MER113 DNA MER1_type? 453 521 0 276 291 189 14 chrX 106273417 106273565 -56326365 + L3 LINE CR1 1351 1524 -53 309 339 8 8 chrX 106273951 106274075 -56325855 + C-rich Low_complexity Low_complexity 1 124 0 1248 116 97 29 chrX 106274185 106274392 -56325538 + AluJb SINE Alu 85 305 -7 2013 94 73 21 chrX 106275223 106275509 -56324421 - AluSx SINE Alu -11 301 1 580 308 11 32 chrX 106275722 106275922 -56324008 - MIR3 SINE MIR 0 208 14 530 303 27 27 chrX 106276745 106276933 -56322997 + MIR3 SINE MIR 16 203 -5 200 262 49 0 chrX 106277450 106277511 -56322419 - MIR SINE MIR -56 152 89 276 287 69 30 chrX 106278360 106278461 -56321469 + L2 LINE L2 3104 3208 -64 646 302 6 0 chrX 106278981 106279160 -56320770 - L3b LINE CR1 -151 1432 1253 2476 87 7 0 chrX 106279190 106279499 -56320431 - AluSq SINE Alu -2 311 1 186 231 0 154 chrX 106279502 106279619 -56320311 - L3b LINE CR1 -315 1268 1170 424 314 63 55 chrX 106280414 106280669 -56319261 + L2 LINE L2 3015 3271 -1 269 217 0 0 chrX 106282005 106282065 -56317865 + T-rich Low_complexity Low_complexity 1 60 0 280 236 0 0 chrX 106283483 106283538 -56316392 + L3b LINE CR1 1285 1339 -244 3154 113 49 17 chrX 106285471 106286004 -56313926 + L1MB4 LINE L1 5626 6175 -5 279 0 0 0 chrX 106286060 106286091 -56313839 + (CA)n Simple_repeat Simple_repeat 1 31 0 276 268 0 12 chrX 106286521 106286603 -56313327 - MER113 DNA MER1_type? 0 521 441 289 257 14 0 chrX 106287305 106287375 -56312555 - MER81 DNA DNA -1 113 43 475 238 148 69 chrX 106287538 106287647 -56312283 + MIR SINE MIR 57 156 -106 2201 113 0 0 chrX 106287647 106287966 -56311964 + AluSx SINE Alu 1 319 0 475 238 148 69 chrX 106287966 106288044 -56311886 + MIR SINE MIR 156 260 -2 1195 143 0 23 chrX 106288918 106289093 -56310837 + AluJo SINE Alu 10 180 -132 2207 138 28 13 chrX 106289193 106289591 -56310339 - L1MA9 LINE L1 -127 6185 5782 217 175 25 0 chrX 106289592 106289632 -56310298 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 316 337 0 0 chrX 106289632 106289718 -56310212 - L1MC4 LINE L1 -1343 6699 6614 183 318 23 0 chrX 106289853 106289897 -56310033 + L2 LINE L2 3214 3258 -14 1146 138 0 0 chrX 106289962 106290121 -56309809 + AluSx SINE Alu 1 159 -153 2496 96 0 0 chrX 106290123 106290435 -56309495 - AluSx SINE Alu 0 312 1 603 66 66 0 chrX 106290435 106290526 -56309404 - L1MA9 LINE L1 -34 6278 6182 201 276 18 149 chrX 106290582 106290612 -56309318 - L2 LINE L2 -90 3182 3150 336 48 0 0 chrX 106290612 106290654 -56309276 + (TG)n Simple_repeat Simple_repeat 2 43 0 201 276 18 149 chrX 106290654 106290851 -56309079 - L2 LINE L2 -122 3150 2985 188 324 70 0 chrX 106290882 106290953 -56308977 + MIR SINE MIR 187 262 0 283 280 0 54 chrX 106290993 106291086 -56308844 + MIR SINE MIR 167 254 -8 2052 145 0 37 chrX 106291447 106291862 -56308068 + AluJb SINE Alu 1 403 0 764 235 65 33 chrX 106293366 106293600 -56306330 - MIR SINE MIR 0 262 23 180 0 0 0 chrX 106293619 106293639 -56306291 + (TTTTC)n Simple_repeat Simple_repeat 3 22 0 659 208 169 0 chrX 106293815 106293969 -56305961 - MER5A DNA MER1_type 0 189 10 1044 136 0 0 chrX 106294158 106294305 -56305625 - L1PB4 LINE L1 0 6156 6010 726 276 210 29 chrX 106295010 106295420 -56304510 - L3 LINE CR1 -76 1501 1018 262 362 30 20 chrX 106295589 106295788 -56304142 + L2 LINE L2 553 753 -2561 1894 318 78 61 chrX 106295809 106297444 -56302486 + L2 LINE L2 1366 3024 -248 241 208 136 56 chrX 106297466 106297591 -56302339 + L1MC4a LINE L1 6037 6171 -1637 325 297 85 100 chrX 106297614 106297873 -56302057 + L2 LINE L2 3017 3271 -1 2053 129 7 3 chrX 106298013 106298308 -56301622 - AluJb SINE Alu -16 296 1 218 250 198 87 chrX 106298308 106298480 -56301450 - L3 LINE CR1 -754 823 633 * 674 344 61 8 chrX 106298473 106298720 -56301210 - MIR SINE MIR -1 261 2 186 178 260 0 chrX 106298723 106298796 -56301134 - L3 LINE CR1 -96 1481 1390 957 274 47 25 chrX 106298798 106299115 -56300815 - L3 LINE CR1 -884 693 370 230 202 46 150 chrX 106299392 106299565 -56300365 + L2 LINE L2 2932 3086 -186 225 200 0 0 chrX 106299583 106299623 -56300307 + L2 LINE L2 3217 3256 -16 331 200 13 40 chrX 106299737 106299812 -56300118 - L2 LINE L2 0 3313 3241 300 284 37 0 chrX 106299839 106299920 -56300010 + L2 LINE L2 3186 3269 -3 609 275 21 21 chrX 106299931 106300120 -56299810 + MER5A DNA MER1_type 1 189 0 467 252 93 68 chrX 106301845 106302155 -56297775 - HAL1 LINE L1 -8 2499 2182 2064 169 64 0 chrX 106302167 106302511 -56297419 + MER47A DNA MER2_type 1 366 0 940 272 66 41 chrX 106302535 106302855 -56297075 - MLT1I LTR MaLR -10 399 72 333 293 12 85 chrX 106302972 106303136 -56296794 - HAL1b LINE L1 -460 888 737 1662 172 3 28 chrX 106303188 106303506 -56296424 + AluSx SINE Alu 1 311 0 2162 93 17 10 chrX 106303659 106303949 -56295981 - AluSg SINE Alu -17 293 2 356 259 165 32 chrX 106303961 106304016 -56295914 - HAL1 LINE L1 -605 1902 1856 920 183 25 120 chrX 106304016 106304257 -56295673 - MER20 DNA MER1_type 0 219 2 356 259 165 32 chrX 106304257 106304359 -56295571 - HAL1 LINE L1 -651 1856 1724 1904 144 182 19 chrX 106304359 106304727 -56295203 - MSTA LTR MaLR 0 428 1 1996 132 6 36 chrX 106304727 106305060 -56294870 - MSTA-int LTR MaLR 0 1651 1329 286 245 59 10 chrX 106305060 106305162 -56294768 - HAL1 LINE L1 -1209 1298 1192 340 229 0 0 chrX 106305168 106305229 -56294701 + MLT1L LTR MaLR 140 200 -415 576 306 39 24 chrX 106305395 106305650 -56294280 + MLT1L LTR MaLR 349 607 -8 2811 94 71 5 chrX 106305650 106306042 -56293888 + L1PA10 LINE L1 5732 6149 -19 180 0 0 0 chrX 106306042 106306062 -56293868 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 189 0 0 0 chrX 106306270 106306291 -56293639 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 616 296 132 5 chrX 106306326 106306546 -56293384 - MIR SINE MIR -14 248 1 5785 167 72 53 chrX 106307110 106308355 -56291575 + L1MB8 LINE L1 3865 5085 -1093 1908 163 7 0 chrX 106308355 106308650 -56291280 + AluSx SINE Alu 1 297 -15 5785 167 72 53 chrX 106308650 106309164 -56290766 + L1MB8 LINE L1 5085 5682 -496 1923 152 58 19 chrX 106309164 106309525 -56290405 - L1PA16 LINE L1 0 6166 5792 5785 167 72 53 chrX 106309525 106309885 -56290045 + L1MB8 LINE L1 5682 6034 -144 1912 141 10 7 chrX 106309886 106310176 -56289754 - AluSx SINE Alu -15 297 7 1696 179 0 3 chrX 106310226 106310539 -56289391 + AluJb SINE Alu 1 312 0 1810 284 26 15 chrX 106310551 106311199 -56288731 - L2 LINE L2 -1114 2200 1546 605 271 35 49 chrX 106311228 106311431 -56288499 - L2 LINE L2 -2063 1251 1052 534 181 6 102 chrX 106311456 106311563 -56288367 + L1P LINE L1 5193 5278 -868 2039 122 17 10 chrX 106311563 106311858 -56288072 + AluJb SINE Alu 2 298 -14 534 181 6 102 chrX 106311858 106311927 -56288003 + L1P LINE L1 5278 5352 -794 274 180 0 0 chrX 106311920 106311970 -56287960 - L1MC4 LINE L1 -1515 6527 6478 * 737 152 18 0 chrX 106311983 106312095 -56287835 - BC200 scRNA scRNA -85 115 2 28 29 0 0 chrX 106312308 106312343 -56287587 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chrX 106312454 106312489 -56287441 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1994 125 0 4 chrX 106312490 106312769 -56287161 - AluSx SINE Alu -34 278 1 2386 42 0 11 chrX 106312817 106313128 -56286802 - AluY SINE Alu 0 308 1 25 0 0 0 chrX 106313246 106313271 -56286659 + AT_rich Low_complexity Low_complexity 1 25 0 262 321 114 93 chrX 106313408 106313751 -56286179 + L2 LINE L2 2830 3179 -93 207 307 189 0 chrX 106314159 106314286 -56285644 + MER5B DNA MER1_type 2 152 -26 394 197 0 0 chrX 106314361 106314427 -56285503 - MER2 DNA MER2_type 0 345 280 922 114 0 23 chrX 106314431 106314563 -56285367 + FLAM_C SINE Alu 1 129 -14 1774 124 42 4 chrX 106314566 106314831 -56285099 - MER2 DNA MER2_type -70 275 1 352 265 31 0 chrX 106314866 106314964 -56284966 - MER5A DNA MER1_type -79 110 10 309 262 103 27 chrX 106314964 106315084 -56284846 + MIR SINE MIR 6 135 -73 860 151 0 0 chrX 106315115 106315241 -56284689 - FLAM_C SINE Alu -17 126 1 187 214 125 0 chrX 106315242 106315298 -56284632 + MIR SINE MIR 123 185 -77 288 286 0 24 chrX 106315471 106315555 -56284375 + MIR SINE MIR 173 254 -8 1934 119 24 10 chrX 106315561 106315854 -56284076 - AluJb SINE Alu -15 297 1 414 154 62 0 chrX 106316418 106316483 -56283447 - AluS SINE Alu -243 70 2 412 195 0 12 chrX 106316485 106316567 -56283363 - L1MC5 LINE L1 -175 7786 7706 297 174 0 43 chrX 106316611 106316703 -56283227 - L1MC5 LINE L1 -271 7690 7603 2256 64 7 0 chrX 106316704 106317034 -56282896 + AluY SINE Alu 2 333 0 808 268 153 42 chrX 106317161 106317370 -56282560 - L3 LINE CR1 -82 1495 1311 2261 170 45 55 chrX 106317370 106317840 -56282090 - MLT1C LTR MaLR -2 465 1 808 268 153 42 chrX 106317840 106317923 -56282007 - L3 LINE CR1 -266 1311 1239 1800 166 10 13 chrX 106317923 106318230 -56281700 - AluJo SINE Alu -6 306 1 808 268 153 42 chrX 106318230 106318414 -56281516 - L3 LINE CR1 -338 1239 965 575 243 17 184 chrX 106318597 106318786 -56281144 - L2 LINE L2 -8 3264 3178 1737 159 3 14 chrX 106318786 106319069 -56280861 + AluJo SINE Alu 1 280 -32 575 243 17 184 chrX 106319069 106319287 -56280643 - L2 LINE L2 -94 3178 2925 4699 143 8 24 chrX 106319357 106320096 -56279834 - LTR8A LTR ERV1 0 727 1 199 263 126 21 chrX 106320166 106320261 -56279669 - L2 LINE L2 -585 2729 2625 487 273 165 13 chrX 106320334 106320703 -56279227 - L2 LINE L2 -816 2498 2000 5500 102 13 4 chrX 106320770 106321521 -56278409 + L1PA11 LINE L1 5414 6171 -3 357 308 46 15 chrX 106321525 106321655 -56278275 - L3 LINE CR1 -1108 469 336 470 281 132 79 chrX 106321692 106321817 -56278113 - L2 LINE L2 -1 3312 3195 757 251 115 8 chrX 106321817 106322052 -56277878 + MIR SINE MIR 3 262 0 470 281 132 79 chrX 106322052 106322267 -56277663 - L2 LINE L2 -118 3195 2954 1040 175 122 0 chrX 106322269 106322458 -56277472 + MER58A DNA MER1_type 13 224 0 260 308 131 0 chrX 106322459 106322566 -56277364 - L2 LINE L2 -350 2964 2844 223 368 81 76 chrX 106322564 106322787 -56277143 - L3 LINE CR1 -1319 258 35 * 315 146 0 0 chrX 106322977 106323032 -56276898 + (CA)n Simple_repeat Simple_repeat 2 56 0 647 196 46 13 chrX 106323132 106323285 -56276645 + MER103 DNA DNA 2 159 -7 1746 277 184 23 chrX 106323554 106324668 -56275262 - L2 LINE L2 -5 3308 2015 1501 166 20 12 chrX 106324879 106325132 -56274798 + MSTA LTR MaLR 1 255 -173 358 118 0 0 chrX 106325127 106325178 -56274752 + MSTA LTR MaLR 378 428 0 * 10176 148 44 6 chrX 106325178 106326769 -56273161 + MSTA-int LTR MaLR 1 1651 0 2514 166 43 12 chrX 106326769 106327184 -56272746 + MSTA LTR MaLR 1 428 0 1470 150 0 38 chrX 106328642 106328882 -56271048 - AluSg/x SINE Alu -10 300 70 406 80 0 0 chrX 106329033 106329083 -56270847 - Alu SINE Alu -261 51 2 731 175 7 70 chrX 106329142 106329285 -56270645 - AluJo SINE Alu -176 136 3 1210 133 58 49 chrX 106329361 106329398 -56270532 - L1MB4 LINE L1 -2 6178 6143 2282 110 0 0 chrX 106329398 106329690 -56270240 - AluSc SINE Alu -17 292 1 1210 133 58 49 chrX 106329690 106329878 -56270052 - L1MB4 LINE L1 -37 6143 5951 398 314 89 40 chrX 106329894 106330244 -56269686 - L1MC4a LINE L1 -2 6119 5753 3586 170 27 37 chrX 106330290 106330985 -56268945 - L1MB2 LINE L1 -3 6168 5481 641 180 23 39 chrX 106330985 106331113 -56268817 - AluJb SINE Alu -175 137 12 335 41 20 0 chrX 106331130 106331179 -56268751 + (TG)n Simple_repeat Simple_repeat 1 50 0 1376 158 45 0 chrX 106331180 106331529 -56268401 - L1MB2 LINE L1 -716 5467 5107 308 83 21 0 chrX 106332441 106332489 -56267441 + (CA)n Simple_repeat Simple_repeat 1 49 0 391 290 132 96 chrX 106332971 106333640 -56266290 - L1M2 LINE L1 -5475 1374 534 2527 129 13 85 chrX 106334673 106335064 -56264866 + MSTA LTR MaLR 1 356 -72 1869 155 26 7 chrX 106335064 106335368 -56264562 - AluJb SINE Alu -2 310 1 2527 129 13 85 chrX 106335368 106335434 -56264496 + MSTA LTR MaLR 356 425 -3 1819 166 21 0 chrX 106335646 106335936 -56263994 - AluJb SINE Alu -16 296 1 346 301 62 34 chrX 106339278 106339424 -56260506 - MIR SINE MIR -70 192 43 291 178 0 122 chrX 106339969 106340059 -56259871 - MIR3 SINE MIR -6 202 124 38 0 0 0 chrX 106340167 106340205 -56259725 + AT_rich Low_complexity Low_complexity 1 38 0 1937 176 0 0 chrX 106340549 106340856 -56259074 - AluJb SINE Alu -5 307 1 228 279 0 16 chrX 106341558 106341619 -56258311 + MIR SINE MIR 3 62 -200 4753 151 40 25 chrX 106341634 106342955 -56256975 - L1MB7 LINE L1 -23 6161 4824 408 275 155 21 chrX 106342965 106343023 -56256907 + MIR SINE MIR 47 96 -166 2269 79 10 3 chrX 106343023 106343313 -56256617 - AluSc SINE Alu -17 292 1 408 275 155 21 chrX 106343313 106343396 -56256534 + MIR SINE MIR 96 207 -55 515 316 113 5 chrX 106344442 106344654 -56255276 + MIR SINE MIR 20 254 -8 237 271 35 12 chrX 106344965 106345050 -56254880 - L2 LINE L2 -938 2376 2290 230 200 57 57 chrX 106345050 106345120 -56254810 + L3 LINE CR1 1502 1571 -6 1644 166 7 32 chrX 106345587 106345895 -56254035 + AluJb SINE Alu 1 300 -12 2171 116 13 0 chrX 106346129 106346432 -56253498 - AluSg SINE Alu -3 307 1 252 0 0 0 chrX 106348756 106348784 -56251146 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 326 331 89 19 chrX 106349549 106349706 -56250224 - MIR3 SINE MIR -3 205 38 27 29 0 0 chrX 106351107 106351141 -56248789 + AT_rich Low_complexity Low_complexity 1 34 0 306 0 0 0 chrX 106352255 106352289 -56247641 + (CA)n Simple_repeat Simple_repeat 2 35 0 297 0 0 0 chrX 106352288 106352321 -56247609 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 237 229 33 0 chrX 106352371 106352432 -56247498 + L3b LINE CR1 1107 1169 -414 216 225 34 56 chrX 106352479 106352568 -56247362 + (CTCA)n Simple_repeat Simple_repeat 3 89 0 449 313 50 16 chrX 106353732 106353914 -56246016 + L3b LINE CR1 1178 1365 -218 360 264 57 79 chrX 106353920 106354060 -56245870 - L2 LINE L2 0 3272 3136 516 337 84 19 chrX 106354430 106354798 -56245132 - L2 LINE L2 -2 3270 2879 381 58 0 0 chrX 106356928 106356980 -56242950 + (CA)n Simple_repeat Simple_repeat 2 53 0 389 280 88 36 chrX 106357970 106358220 -56241710 + L2 LINE L2 1759 2021 -1293 267 330 53 93 chrX 106358224 106358415 -56241515 + L2 LINE L2 2581 2778 -494 282 29 0 0 chrX 106358415 106358450 -56241480 + (CAA)n Simple_repeat Simple_repeat 2 36 0 267 330 53 93 chrX 106358450 106358601 -56241329 + L2 LINE L2 2778 2901 -371 2150 108 4 0 chrX 106358601 106358944 -56240986 - AluSq SINE Alu 0 354 11 267 330 53 93 chrX 106358944 106359075 -56240855 + L2 LINE L2 2901 3036 -236 1921 158 0 0 chrX 106360070 106360362 -56239568 - AluJo SINE Alu -20 292 1 21 0 0 0 chrX 106360520 106360541 -56239389 + AT_rich Low_complexity Low_complexity 1 21 0 378 308 106 20 chrX 106360583 106360781 -56239149 + MIR SINE MIR 33 247 -15 510 190 0 0 chrX 106360784 106360862 -56239068 + Tigger5 DNA MER2_type 1 78 -2245 449 187 0 0 chrX 106360862 106360937 -56238993 - Tigger5 DNA MER2_type -3 2320 2246 262 264 28 66 chrX 106360989 106361095 -56238835 + MIR SINE MIR 119 220 -42 184 313 0 0 chrX 106361210 106361258 -56238672 + L2 LINE L2 3252 3299 -14 439 328 45 25 chrX 106362692 106362890 -56237040 + MIR3 SINE MIR 4 205 -3 220 329 141 0 chrX 106363696 106363781 -56236149 - L2 LINE L2 -20 3252 3156 2276 94 3 3 chrX 106364044 106364343 -56235587 - AluSx SINE Alu -13 299 1 264 299 103 34 chrX 106365293 106365410 -56234520 - L2 LINE L2 -10 3262 3138 39 0 0 0 chrX 106365951 106365990 -56233940 + AT_rich Low_complexity Low_complexity 1 39 0 986 320 81 48 chrX 106366560 106367289 -56232641 - L2 LINE L2 -388 2926 2174 993 256 55 4 chrX 106367490 106367728 -56232202 - MIR SINE MIR 0 262 13 2123 116 0 0 chrX 106368100 106368407 -56231523 + AluSq SINE Alu 1 307 0 185 167 24 24 chrX 106368661 106368703 -56231227 + L3 LINE CR1 1396 1437 -140 462 204 191 20 chrX 106368739 106368891 -56231039 + MIR SINE MIR 78 255 -7 258 156 0 0 chrX 106368915 106368960 -56230970 + GA-rich Low_complexity Low_complexity 3 47 0 180 77 0 0 chrX 106368981 106369007 -56230923 + (TAG)n Simple_repeat Simple_repeat 1 26 0 532 306 75 15 chrX 106370658 106370857 -56229073 - MIR SINE MIR -32 230 20 712 258 86 5 chrX 106371717 106371915 -56228015 - MIR SINE MIR -46 216 3 495 0 0 0 chrX 106373185 106373240 -56226690 + (CA)n Simple_repeat Simple_repeat 2 56 0 225 333 56 63 chrX 106373347 106373473 -56226457 - L2 LINE L2 -22 3250 3126 683 214 48 36 chrX 106373582 106373750 -56226180 - MIR SINE MIR -4 258 89 * 770 293 74 101 chrX 106373746 106373898 -56226032 - L2 LINE L2 -453 2861 2706 2158 83 0 40 chrX 106373898 106374223 -56225707 - AluSc SINE Alu 0 309 1 770 293 74 101 chrX 106374223 106374768 -56225162 - L2 LINE L2 -608 2706 2191 733 172 7 14 chrX 106374768 106374913 -56225017 + L1MB8 LINE L1 6033 6176 -2 770 293 74 101 chrX 106374913 106375116 -56224814 - L2 LINE L2 -1123 2191 1984 597 302 75 44 chrX 106375836 106376581 -56223349 - L1M4 LINE L1 -1099 5047 4280 374 301 65 11 chrX 106376634 106376812 -56223118 - L1M4 LINE L1 -1951 4195 4005 502 303 88 47 chrX 106376898 106377215 -56222715 - L1M4 LINE L1 -2298 3848 3519 351 245 148 70 chrX 106377308 106377376 -56222554 - L1M4 LINE L1 -2755 3391 3330 660 272 92 15 chrX 106377376 106377571 -56222359 - MER63A DNA MER1_type 0 210 1 351 245 148 70 chrX 106377571 106377800 -56222130 - L1M4 LINE L1 -2816 3330 3071 310 313 20 27 chrX 106377815 106377965 -56221965 - L1M4 LINE L1 -3126 3020 2872 1990 207 114 72 chrX 106378049 106378801 -56221129 - LTR1B LTR ERV1 -42 784 1 1971 193 26 0 chrX 106378803 106379151 -56220779 - LTR1B-int LTR ERV1 -1 7090 6734 * 34466 151 11 11 chrX 106379145 106385522 -56214408 - LTR1B-int LTR ERV1 -419 2669 75 1989 203 106 77 chrX 106385720 106386485 -56213445 - LTR1B LTR ERV1 -39 787 1 3474 141 141 39 chrX 106386752 106386888 -56213042 - LTR8A LTR ERV1 0 727 606 1826 162 51 0 chrX 106386888 106387184 -56212746 - AluJb SINE Alu -1 311 1 3474 141 141 39 chrX 106387184 106387707 -56212223 - LTR8A LTR ERV1 -121 606 1 322 256 80 41 chrX 106387739 106387887 -56212043 - L1MC/D LINE L1 -477 5644 5510 507 261 95 52 chrX 106388519 106388730 -56211200 + L1MC5 LINE L1 7562 7793 -168 7153 73 8 1 chrX 106388730 106390122 -56209808 + L1PA7 LINE L1 4753 6151 -3 507 261 95 52 chrX 106390122 106390236 -56209694 + L1MC5 LINE L1 7793 7901 -60 779 300 28 8 chrX 106391092 106391342 -56208588 - MIR SINE MIR -6 256 2 189 0 0 0 chrX 106391406 106391427 -56208503 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 216 0 0 0 chrX 106391447 106391471 -56208459 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 612 258 16 47 chrX 106391507 106391697 -56208233 + MIR SINE MIR 29 212 -50 270 0 0 0 chrX 106391865 106391895 -56208035 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 39095 42 2 1 chrX 106391895 106398027 -56201903 - L1PA4 LINE L1 -12 6143 1 2193 124 10 3 chrX 106398042 106398341 -56201589 - AluSx SINE Alu -11 301 1 327 295 0 13 chrX 106399044 106399122 -56200808 + MIR SINE MIR 20 96 -112 389 286 150 89 chrX 106399230 106399798 -56200132 + L2 LINE L2 2578 3265 -7 244 277 128 0 chrX 106400503 106400597 -56199333 + MIR SINE MIR 113 218 -44 301 240 210 10 chrX 106400636 106400736 -56199194 - L2 LINE L2 -1 3271 3152 260 287 74 124 chrX 106400763 106401021 -56198909 + L2 LINE L2 3014 3258 -14 750 214 112 9 chrX 106401389 106401587 -56198343 - L2 LINE L2 0 3313 3090 336 24 0 0 chrX 106401587 106401628 -56198302 + (TG)n Simple_repeat Simple_repeat 1 41 0 750 214 112 9 chrX 106401628 106401644 -56198286 - L2 LINE L2 -223 3090 3077 1861 244 62 45 chrX 106401761 106402482 -56197448 - L1MD2 LINE L1 -16 6343 5607 492 340 32 0 chrX 106402522 106402710 -56197220 + MIR3 SINE MIR 8 201 -7 1958 111 3 62 chrX 106402836 106403143 -56196787 + AluSx SINE Alu 11 299 -13 243 88 0 0 chrX 106403575 106403609 -56196321 + (CA)n Simple_repeat Simple_repeat 1 34 0 1108 239 20 16 chrX 106403609 106403856 -56196074 + MIR SINE MIR 14 261 -1 205 175 0 0 chrX 106404446 106404486 -56195444 + (TG)n Simple_repeat Simple_repeat 1 40 0 318 300 43 164 chrX 106405038 106405501 -56194429 + L2 LINE L2 2857 3263 -9 23 0 0 0 chrX 106405662 106405685 -56194245 + AT_rich Low_complexity Low_complexity 1 23 0 195 100 0 0 chrX 106405925 106405955 -56193975 + (CCCCCT)n Simple_repeat Simple_repeat 3 32 0 182 292 221 9 chrX 106407065 106407178 -56192752 - L2 LINE L2 -6 3307 3171 202 250 17 33 chrX 106407669 106407729 -56192201 + L2 LINE L2 3209 3267 -5 726 100 0 0 chrX 106407909 106408009 -56191921 - HY3 scRNA scRNA -1 100 1 274 344 79 19 chrX 106408061 106408276 -56191654 - L2 LINE L2 -806 2508 2281 595 337 67 56 chrX 106408288 106408733 -56191197 - L2 LINE L2 -1 3271 2822 910 281 26 4 chrX 106408780 106409008 -56190922 + MIR SINE MIR 2 234 -28 756 254 60 5 chrX 106409735 106409936 -56189994 + MIR SINE MIR 48 259 -3 562 191 56 2 chrX 106410992 106411136 -56188794 + L1ME3 LINE L1 6019 6170 0 214 401 33 26 chrX 106411251 106411523 -56188407 - L2 LINE L2 -617 2697 2424 270 203 209 20 chrX 106411817 106411965 -56187965 + L1ME4a LINE L1 5943 6118 -3 1203 346 95 43 chrX 106413033 106413337 -56186593 + L2 LINE L2 592 879 -2435 2199 135 0 0 chrX 106413337 106413648 -56186282 - AluSx SINE Alu -1 311 1 1203 346 95 43 chrX 106413648 106414512 -56185418 + L2 LINE L2 879 1821 -1493 229 207 12 49 chrX 106414527 106414609 -56185321 - HAL1 LINE L1 -3 2504 2426 1086 258 12 0 chrX 106414632 106414872 -56185058 - MIR SINE MIR -1 261 19 375 215 25 16 chrX 106414875 106414996 -56184934 - HAL1 LINE L1 -114 2393 2272 4142 217 15 30 chrX 106415012 106415358 -56184572 - L1MEc LINE L1 -5082 1314 964 1457 196 61 4 chrX 106415358 106415638 -56184292 + AluJo SINE Alu 1 296 -16 4142 217 15 30 chrX 106415638 106416375 -56183555 - L1MEc LINE L1 -5432 964 247 665 202 139 106 chrX 106416406 106416640 -56183290 - HAL1 LINE L1 -805 1702 1454 4794 135 20 2 chrX 106416640 106417453 -56182477 - L1MA7 LINE L1 -2 6289 5463 665 202 139 106 chrX 106417453 106417520 -56182410 - HAL1 LINE L1 -1053 1454 1391 645 128 0 0 chrX 106417531 106417633 -56182297 + (TTTCC)n Simple_repeat Simple_repeat 4 105 0 2026 121 0 0 chrX 106417643 106417915 -56182015 - AluSx SINE Alu -39 273 2 1685 254 74 47 chrX 106417926 106418708 -56181222 - HAL1 LINE L1 -1130 1377 575 263 289 87 0 chrX 106418741 106418845 -56181085 - HAL1 LINE L1 -2048 459 347 563 215 59 73 chrX 106418873 106419092 -56180838 - HAL1 LINE L1 -2282 225 10 721 304 70 27 chrX 106419101 106419502 -56180428 + L2 LINE L2 1830 2247 -1067 245 305 61 6 chrX 106419944 106420108 -56179822 - L1ME LINE L1 -209 5912 5740 364 333 32 13 chrX 106420118 106420274 -56179656 - L1ME LINE L1 -415 5706 5548 309 255 75 21 chrX 106420349 106420443 -56179487 - L1ME LINE L1 -720 5450 5352 495 348 50 0 chrX 106420521 106420702 -56179228 + L2 LINE L2 2632 2821 -493 510 325 68 43 chrX 106420754 106421034 -56178896 + L2 LINE L2 2985 3271 -1 260 350 0 31 chrX 106421443 106421540 -56178390 - MER5B DNA MER1_type -84 94 1 651 283 56 12 chrX 106421578 106421829 -56178101 + MIR SINE MIR 1 262 0 265 289 124 41 chrX 106421850 106421971 -56177959 - L2 LINE L2 -5 3267 3137 1790 132 37 40 chrX 106422037 106422333 -56177597 + AluSx SINE Alu 1 295 -17 24 85 0 0 chrX 106422951 106423010 -56176920 + AT_rich Low_complexity Low_complexity 1 59 0 324 202 174 18 chrX 106423470 106423579 -56176351 - MIR SINE MIR -15 247 122 2221 99 0 0 chrX 106423621 106423903 -56176027 + AluSq SINE Alu 1 282 -31 841 279 68 0 chrX 106425707 106425929 -56174001 - L3 LINE CR1 0 1577 1341 533 272 69 73 chrX 106425928 106426174 -56173756 - MIR SINE MIR 0 262 18 * 1676 288 125 11 chrX 106426188 106426842 -56173088 - L3 LINE CR1 -242 1335 607 4326 222 91 75 chrX 106427479 106429607 -56170323 - L1MC4 LINE L1 0 8042 5789 527 267 74 23 chrX 106430525 106430701 -56169229 + MIR3 SINE MIR 16 200 -8 353 289 121 24 chrX 106431719 106431885 -56168045 - MLT1J LTR MaLR -94 417 236 228 255 20 29 chrX 106434338 106434440 -56165490 + (TA)n Simple_repeat Simple_repeat 1 101 0 215 271 169 25 chrX 106435385 106435503 -56164427 - L2 LINE L2 0 3313 3179 621 261 75 35 chrX 106435732 106435931 -56163999 + MIR SINE MIR 49 255 -7 214 323 116 13 chrX 106436044 106436199 -56163731 + L2 LINE L2 2694 2864 -450 532 279 58 23 chrX 106436637 106436809 -56163121 + MER5A DNA MER1_type 1 178 -11 432 262 90 8 chrX 106436822 106436944 -56162986 + L2 LINE L2 3141 3272 0 492 284 43 19 chrX 106437108 106437319 -56162611 - MARNA DNA Mariner -146 440 225 276 221 0 44 chrX 106439666 106439734 -56160196 + L2 LINE L2 3208 3272 0 2939 196 14 21 chrX 106440439 106441005 -56158925 - REP3 LTR ERV 0 562 1 279 250 83 12 chrX 106441249 106441333 -56158597 + MIR3 SINE MIR 100 189 -19 522 217 142 8 chrX 106441904 106442024 -56157906 - L2 LINE L2 0 3272 3137 490 266 0 0 chrX 106442059 106442172 -56157758 - MIR SINE MIR -8 254 142 292 343 14 0 chrX 106443172 106443318 -56156612 + (TG)n Simple_repeat Simple_repeat 1 148 0 208 43 0 85 chrX 106443936 106443983 -56155947 + (CCCCCG)n Simple_repeat Simple_repeat 4 46 0 468 204 196 48 chrX 106444057 106444146 -56155784 + MIR SINE MIR 35 109 -153 196 42 0 0 chrX 106444146 106444170 -56155760 + (TTTA)n Simple_repeat Simple_repeat 1 164 0 1887 148 0 0 chrX 106444170 106444454 -56155476 - AluSx SINE Alu -1 307 1 468 204 196 48 chrX 106444454 106444551 -56155379 + MIR SINE MIR 108 250 -12 329 131 16 0 chrX 106444573 106444634 -56155296 + (TA)n Simple_repeat Simple_repeat 2 63 0 220 310 100 0 chrX 106444829 106444929 -56155001 + L2 LINE L2 2590 2699 -615 400 238 0 79 chrX 106444941 106445067 -56154863 + MIR SINE MIR 2 117 -145 435 182 162 14 chrX 106446536 106446684 -56153246 + MIR SINE MIR 85 254 -8 580 294 123 79 chrX 106447218 106447385 -56152545 - L2 LINE L2 -2 3311 3153 2203 107 13 0 chrX 106447385 106447685 -56152245 + AluSq SINE Alu 1 304 -9 580 294 123 79 chrX 106447685 106447973 -56151957 - L2 LINE L2 -160 3153 2836 1890 163 0 7 chrX 106448063 106448358 -56151572 + AluJb SINE Alu 1 293 -19 310 222 40 10 chrX 106448424 106448523 -56151407 + (TA)n Simple_repeat Simple_repeat 1 102 0 25 0 0 0 chrX 106448600 106448625 -56151305 + AT_rich Low_complexity Low_complexity 1 25 0 790 162 0 0 chrX 106448635 106448752 -56151178 - AluJb SINE Alu -194 118 2 385 250 0 10 chrX 106448757 106448853 -56151077 - L1ME LINE L1 -299 5822 5728 2825 137 8 25 chrX 106448853 106449329 -56150601 + L1PA13 LINE L1 5693 6160 -3 530 258 132 13 chrX 106449501 106449660 -56150270 - MIR SINE MIR -25 237 60 26 0 0 0 chrX 106449889 106449915 -56150015 + AT_rich Low_complexity Low_complexity 1 26 0 9729 81 8 25 chrX 106450327 106456444 -56143486 - L1PA6 LINE L1 0 6154 11 21 0 0 0 chrX 106456492 106456513 -56143417 + AT_rich Low_complexity Low_complexity 1 21 0 959 322 47 9 chrX 106456630 106457270 -56142660 - L1M4 LINE L1 -1543 4603 3940 1717 146 0 42 chrX 106457270 106457578 -56142352 + AluJo SINE Alu 17 311 -1 938 227 86 112 chrX 106457677 106458080 -56141850 - L1MC5 LINE L1 -25 7936 7524 2477 55 0 0 chrX 106458080 106458407 -56141523 - AluY SINE Alu 0 311 1 938 227 86 112 chrX 106458407 106458626 -56141304 - L1MC5 LINE L1 -437 7524 7331 1682 154 10 24 chrX 106458626 106458919 -56141011 + AluJb SINE Alu 12 300 -12 938 227 86 112 chrX 106458919 106458990 -56140940 - L1MC5 LINE L1 -630 7331 7260 843 235 19 44 chrX 106459067 106459349 -56140581 - L1MC4 LINE L1 -743 7218 6995 272 278 52 40 chrX 106459338 106459511 -56140419 - L1M4 LINE L1 -2276 3870 3696 * 286 281 31 48 chrX 106459511 106459653 -56140277 + MER20 DNA MER1_type 1 75 -144 289 286 126 60 chrX 106459750 106460099 -56139831 - L1M4 LINE L1 -2413 3733 3362 31381 115 11 61 chrX 106460341 106463423 -56136507 - L1PA8 LINE L1 -15 6157 3587 2397 88 0 3 chrX 106463423 106463728 -56136202 - AluY SINE Alu -7 304 1 31381 115 11 61 chrX 106463728 106467135 -56132795 - L1PA8 LINE L1 -2585 3587 9 435 183 0 12 chrX 106467141 106467223 -56132707 - MLT2D LTR ERVL -185 229 149 413 277 53 53 chrX 106467232 106467420 -56132510 - L1M4 LINE L1 -2853 3293 3106 6860 128 30 13 chrX 106467428 106469360 -56130570 - L1MA3 LINE L1 -2 6303 4337 2305 141 30 82 chrX 106469355 106469829 -56130101 - L1MB3 LINE L1 -8 6175 5727 * 1792 172 6 21 chrX 106469889 106470226 -56129704 - L1MB7 LINE L1 -30 6154 5823 242 224 0 0 chrX 106470226 106470275 -56129655 - Alu SINE Alu -2 300 252 4689 192 21 3 chrX 106470276 106471151 -56128779 - MSTB-int LTR MaLR -761 890 1 3035 116 29 2 chrX 106471151 106471566 -56128364 - MSTB LTR MaLR 0 426 1 1001 104 0 32 chrX 106471566 106471720 -56128210 + L1MA9 LINE L1 6164 6312 0 460 356 20 0 chrX 106471766 106471915 -56128015 + MER91A DNA MER1_type 2 153 -43 273 263 12 12 chrX 106472177 106472257 -56127673 - LTR67 LTR ERVL -6 551 472 426 275 78 7 chrX 106472505 106472647 -56127283 - L2 LINE L2 -995 2319 2168 696 270 62 5 chrX 106472905 106473116 -56126814 - MIR SINE MIR -10 252 30 588 327 71 13 chrX 106473179 106473405 -56126525 - MIR SINE MIR -15 247 9 396 250 33 0 chrX 106473440 106473532 -56126398 - MER5B DNA MER1_type -1 177 83 8760 23 0 2 chrX 106473547 106473561 -56126369 + L1P1 LINE L1 4363 4376 -1779 4441 37 0 10 chrX 106473561 106474073 -56125857 - L1PA3 LINE L1 0 6155 5649 8760 23 0 2 chrX 106474073 106475280 -56124650 + L1P1 LINE L1 4376 5581 -574 284 222 16 16 chrX 106475310 106475373 -56124557 - L2 LINE L2 0 3313 3251 241 177 13 114 chrX 106475388 106475467 -56124463 - MLT1H LTR MaLR 0 549 479 264 330 40 0 chrX 106475707 106475807 -56124123 - MLT1H LTR MaLR -388 161 58 239 147 0 0 chrX 106475919 106475953 -56123977 - MER5B DNA MER1_type -144 34 1 302 271 123 77 chrX 106475953 106476108 -56123822 - MIR3 SINE MIR -10 198 37 1768 184 3 7 chrX 106477570 106477864 -56122066 - AluJb SINE Alu -19 293 1 1015 208 102 0 chrX 106478439 106478636 -56121294 + MER58A DNA MER1_type 4 220 -4 336 190 0 176 chrX 106478714 106478856 -56121074 + MER103 DNA DNA 2 118 -48 440 229 109 69 chrX 106478968 106479012 -56120918 + MIR SINE MIR 68 109 -153 1018 213 23 0 chrX 106479012 106479186 -56120744 - MER45A DNA AcHobo 0 178 1 440 229 109 69 chrX 106479186 106479316 -56120614 + MIR SINE MIR 109 249 -13 1579 278 52 67 chrX 106479350 106479551 -56120379 - L2 LINE L2 -8 3305 3102 1527 78 0 10 chrX 106479551 106479743 -56120187 + AluY SINE Alu 98 287 -24 1579 278 52 67 chrX 106479743 106480583 -56119347 - L2 LINE L2 -211 3102 2269 342 0 0 0 chrX 106482351 106482389 -56117541 + (TG)n Simple_repeat Simple_repeat 2 39 0 317 221 173 31 chrX 106483495 106483622 -56116308 + MIR SINE MIR 90 234 -28 * 444 255 165 1 chrX 106483605 106483768 -56116162 + MIR SINE MIR 8 193 -63 2144 106 36 7 chrX 106485069 106485370 -56114560 + AluSx SINE Alu 1 310 -2 1345 146 5 32 chrX 106485640 106485859 -56114071 + MER20 DNA MER1_type 7 219 0 258 346 0 0 chrX 106487467 106487574 -56112356 + C-rich Low_complexity Low_complexity 1 107 0 2301 101 0 0 chrX 106489776 106490084 -56109846 + AluY SINE Alu 1 308 -3 278 250 99 62 chrX 106490438 106490630 -56109300 + L1ME4a LINE L1 5923 6121 0 223 282 129 35 chrX 106491116 106491201 -56108729 + L2 LINE L2 3217 3309 -4 330 314 155 19 chrX 106491947 106492154 -56107776 - MIR SINE MIR 0 262 28 2335 177 14 36 chrX 106492192 106492225 -56107705 - MLT2D LTR ERVL -4 410 378 474 18 0 0 chrX 106492225 106492280 -56107650 + (TG)n Simple_repeat Simple_repeat 2 56 0 2335 177 14 36 chrX 106492280 106492665 -56107265 - MLT2D LTR ERVL -36 378 1 36845 48 3 1 chrX 106492840 106498360 -56101570 - L1PA4 LINE L1 0 6155 623 731 47 0 0 chrX 106498360 106498446 -56101484 - L1PA4 LINE L1 -6050 96 11 213 238 0 0 chrX 106498639 106498681 -56101249 + L2 LINE L2 3261 3302 -11 222 215 0 15 chrX 106499625 106499636 -56100294 + (TAA)n Simple_repeat Simple_repeat 3 13 -53 2592 121 77 46 chrX 106499636 106500051 -56099879 - MSTA LTR MaLR 0 428 1 222 215 0 15 chrX 106500051 106500104 -56099826 + (TAA)n Simple_repeat Simple_repeat 13 66 0 555 252 98 0 chrX 106500152 106500295 -56099635 - MIR SINE MIR -89 173 17 465 217 118 33 chrX 106500541 106500693 -56099237 - MIR SINE MIR -1 261 97 510 115 35 0 chrX 106501000 106501087 -56098843 + L1MB4 LINE L1 6091 6180 0 528 384 88 14 chrX 106501286 106501864 -56098066 + L2 LINE L2 189 809 -2505 1153 175 25 10 chrX 106501866 106502066 -56097864 - MER3 DNA MER1_type -2 207 5 849 209 105 7 chrX 106502136 106502316 -56097614 + FAM SINE Alu 1 60 0 312 153 0 0 chrX 106502318 106502377 -56097553 + FAM SINE Alu 107 165 -1 7161 119 32 16 chrX 106502429 106503248 -56096682 + L1PB1 LINE L1 1 805 -6062 9606 42 2 1 chrX 106503248 106504318 -56095612 + MER11C LTR ERVK 1 1071 0 7161 119 32 16 chrX 106504318 106505513 -56094417 + L1PB1 LINE L1 805 6866 -1 182 234 85 0 chrX 106505565 106505612 -56094318 - L2 LINE L2 -37 3235 3185 276 161 71 0 chrX 106505612 106505668 -56094262 + L1M4 LINE L1 4720 4779 -1367 744 240 7 82 chrX 106505687 106505844 -56094086 + L1M4 LINE L1 4874 5002 -1144 2517 84 0 0 chrX 106505844 106506152 -56093778 + AluSc SINE Alu 1 308 -1 744 240 7 82 chrX 106506152 106506273 -56093657 + L1M4 LINE L1 5002 5131 -1015 990 178 22 6 chrX 106506279 106506459 -56093471 + L1MD1 LINE L1 6060 6242 0 432 312 52 6 chrX 106506459 106506632 -56093298 - L2 LINE L2 -1295 2019 1839 766 148 39 8 chrX 106506638 106506766 -56093164 + MSTB LTR MaLR 215 346 -80 30 0 0 0 chrX 106506766 106506796 -56093134 + AT_rich Low_complexity Low_complexity 1 30 0 258 153 0 0 chrX 106506796 106506855 -56093075 + GA-rich Low_complexity Low_complexity 2 60 0 2071 101 18 0 chrX 106506857 106507134 -56092796 - AluSx SINE Alu -30 282 1 1367 131 0 0 chrX 106507219 106507410 -56092520 + L1PA15-16 LINE L1 12 202 -6647 15115 160 23 40 chrX 106507410 106510895 -56089035 + L1PA15-16 LINE L1 604 4022 -2827 309 214 0 0 chrX 106561030 106561086 -56038844 + L2 LINE L2 3217 3272 0 243 0 0 0 chrX 106561637 106561664 -56038266 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 1200 100 0 0 chrX 106561663 106561875 -56038055 + (TA)n Simple_repeat Simple_repeat 1 212 0 2251 87 7 0 chrX 106561887 106562175 -56037755 - AluSp SINE Alu -23 290 1 413 68 0 0 chrX 106562241 106562300 -56037630 - L1PA3 LINE L1 0 6155 6097 908 192 33 0 chrX 106562587 106562769 -56037161 - MER3 DNA MER1_type -21 188 1 411 277 0 0 chrX 106563244 106563338 -56036592 + L2 LINE L2 3168 3261 -11 297 140 0 0 chrX 106564574 106564624 -56035306 - Charlie1 DNA MER1_type 0 2761 2712 2132 227 51 56 chrX 106564631 106565695 -56034235 + L1MD2 LINE L1 141 1318 -5225 1748 144 22 58 chrX 106565678 106566006 -56033924 + L1MA7 LINE L1 5813 6128 -163 * 880 94 0 0 chrX 106566006 106566132 -56033798 + L1PB1 LINE L1 6021 6147 -4 1748 144 22 58 chrX 106566132 106566165 -56033765 + L1MA7 LINE L1 6128 6161 -130 1752 165 10 14 chrX 106566189 106566315 -56033615 + AluJb SINE Alu 1 126 -186 189 0 0 0 chrX 106566315 106566336 -56033594 + (CA)n Simple_repeat Simple_repeat 2 22 0 1752 165 10 14 chrX 106566336 106566523 -56033407 + AluJb SINE Alu 126 312 0 776 98 0 30 chrX 106566524 106566657 -56033273 + L1MA7 LINE L1 6163 6291 0 302 284 26 43 chrX 106566672 106566788 -56033142 - L1MC5 LINE L1 -397 7564 7451 433 158 10 0 chrX 106566812 106566913 -56033017 + L1MD2 LINE L1 1301 1402 -5141 * 1853 205 96 13 chrX 106566907 106567521 -56032409 + L1MD2 LINE L1 1881 2545 -3995 1748 110 82 52 chrX 106567547 106567875 -56032055 + MER44D DNA MER2_type 1 608 -1 5876 213 22 41 chrX 106567875 106569667 -56030263 + L1MD2 LINE L1 2613 4371 -2169 1769 205 49 31 chrX 106569670 106570123 -56029807 - MLT1C LTR MaLR 0 467 7 5026 188 23 19 chrX 106570128 106571463 -56028467 + L1MD2 LINE L1 4369 6750 -3 309 315 0 0 chrX 106571492 106571581 -56028349 - MER81 DNA DNA -19 95 7 333 172 0 0 chrX 106572796 106572860 -56027070 + (TG)n Simple_repeat Simple_repeat 2 65 0 182 257 257 10 chrX 106573306 106573407 -56026523 + MIR SINE MIR 81 206 -56 643 278 50 20 chrX 106574523 106574721 -56025209 + MIR SINE MIR 59 262 0 234 286 12 0 chrX 106576213 106576297 -56023633 + MER20 DNA MER1_type 135 219 0 286 273 102 0 chrX 106577189 106577277 -56022653 + MIR SINE MIR 34 130 -78 416 270 151 26 chrX 106579150 106579302 -56020628 + MIR3 SINE MIR 27 197 -11 399 248 0 35 chrX 106579441 106579582 -56020348 + MER113 DNA MER1_type? 1 136 -385 189 323 100 62 chrX 106579727 106579857 -56020073 - MIR3 SINE MIR -36 172 38 192 307 27 13 chrX 106579864 106579939 -56019991 - MIR3 SINE MIR -129 79 4 229 279 0 16 chrX 106580044 106580105 -56019825 + MIR SINE MIR 85 144 -64 235 261 0 0 chrX 106580221 106580267 -56019663 + MIR3 SINE MIR 141 186 -22 2363 121 111 5 chrX 106582245 106582632 -56017298 - MSTA LTR MaLR 0 428 1 317 275 124 25 chrX 106582679 106582824 -56017106 + MIR SINE MIR 23 180 -82 602 314 69 48 chrX 106583550 106583884 -56016046 - L2 LINE L2 -4 3268 2928 457 250 117 27 chrX 106584858 106585046 -56014884 - MIR SINE MIR -45 217 13 291 172 25 49 chrX 106585203 106585325 -56014605 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 180 347 69 0 chrX 106585573 106585645 -56014285 + L2 LINE L2 3194 3270 -2 186 43 0 0 chrX 106585765 106585788 -56014142 + (A)n Simple_repeat Simple_repeat 1 23 0 2156 117 3 0 chrX 106586126 106586425 -56013505 - AluSq SINE Alu -13 300 1 23 0 0 0 chrX 106586428 106586451 -56013479 + AT_rich Low_complexity Low_complexity 1 23 0 263 326 23 0 chrX 106587417 106587503 -56012427 - MIR SINE MIR -27 235 148 578 215 19 42 chrX 106587702 106587892 -56012038 - MIR SINE MIR -62 146 19 578 333 49 34 chrX 106588350 106588614 -56011316 - L2 LINE L2 -1 3271 3004 1261 238 99 45 chrX 106588643 106589281 -56010649 + HAL1 LINE L1 1817 2488 -19 403 235 47 0 chrX 106590235 106590320 -56009610 - MIR SINE MIR -1 261 173 603 201 81 0 chrX 106590321 106590470 -56009460 - ORSL DNA AcHobo -112 163 3 217 318 0 15 chrX 106590550 106590616 -56009314 - L2 LINE L2 -9 3304 3240 2151 95 0 10 chrX 106591584 106591879 -56008051 - AluSc SINE Alu -17 292 1 2291 93 0 0 chrX 106592200 106592490 -56007440 + AluSx SINE Alu 21 310 -2 469 242 19 6 chrX 106592995 106593023 -56006907 - L1MA10 LINE L1 -1 6333 6306 874 220 26 30 chrX 106593023 106593291 -56006639 - L1ME2 LINE L1 -20 6144 5878 368 272 40 32 chrX 106593787 106593912 -56006018 + L3 LINE CR1 540 665 -912 643 289 35 0 chrX 106594064 106594261 -56005669 + L3 LINE CR1 653 856 -721 2294 220 123 30 chrX 106595303 106596004 -56003926 - MER21B LTR ERV1 -51 812 47 471 191 0 0 chrX 106596005 106596089 -56003841 - MER21B LTR ERV1 -768 95 12 1970 121 21 0 chrX 106596921 106597201 -56002729 - AluSx SINE Alu -26 286 1 264 263 46 72 chrX 106599392 106599544 -56000386 - MIR SINE MIR -50 212 65 479 244 28 103 chrX 106599549 106599762 -56000168 - MIR SINE MIR -9 253 57 362 300 70 25 chrX 106600277 106600477 -55999453 + L1ME4a LINE L1 5124 5332 -814 1830 220 94 18 chrX 106600523 106600811 -55999119 + L1ME4a LINE L1 5380 5645 -476 1895 159 0 7 chrX 106600811 106601100 -55998830 - AluJo SINE Alu -25 287 1 1830 220 94 18 chrX 106601100 106601482 -55998448 + L1ME4a LINE L1 5645 6121 0 651 167 92 0 chrX 106602282 106602402 -55997528 - FRAM SINE Alu -6 170 40 556 290 80 18 chrX 106603022 106603246 -55996684 - MIR SINE MIR -11 251 14 22 56 0 0 chrX 106603331 106603367 -55996563 + AT_rich Low_complexity Low_complexity 1 36 0 2402 90 3 0 chrX 106603424 106603736 -55996194 + AluSq SINE Alu 1 313 0 649 259 98 26 chrX 106603844 106604223 -55995707 - L1MC5 LINE L1 -47 7914 7509 272 214 0 29 chrX 106604864 106604934 -55994996 + L2 LINE L2 3182 3249 -23 2270 119 27 10 chrX 106606426 106606828 -55993102 - Cheshire DNA MER1_type 0 2420 2012 25 0 0 0 chrX 106606828 106606853 -55993077 + AT_rich Low_complexity Low_complexity 1 25 0 311 188 58 0 chrX 106606858 106606927 -55993003 - L1MD3 LINE L1 -18 7977 7905 4014 189 14 15 chrX 106606930 106608193 -55991737 - L1MB8 LINE L1 -17 6161 4903 1298 186 115 26 chrX 106608193 106608542 -55991388 - L1MC3 LINE L1 -96 7689 7310 1496 132 79 0 chrX 106608546 106608826 -55991104 - Cheshire DNA MER1_type -389 2031 1730 1870 110 103 0 chrX 106608826 106609099 -55990831 - AluSx SINE Alu -11 301 1 1912 163 3 0 chrX 106609101 106609396 -55990534 - AluJb SINE Alu -16 296 1 1088 151 8 104 chrX 106609405 106609571 -55990359 - L1M4 LINE L1 -521 5663 5529 2173 138 3 0 chrX 106609571 106609882 -55990048 - AluSx SINE Alu 0 312 1 1088 151 8 104 chrX 106609882 106609974 -55989956 - L1M4 LINE L1 -655 5529 5430 1299 127 39 0 chrX 106609974 106610203 -55989727 - Cheshire DNA MER1_type -678 1742 1505 389 277 0 0 chrX 106610197 106610291 -55989639 - Cheshire DNA MER1_type -2314 106 13 * 404 82 27 0 chrX 106610517 106610590 -55989340 + (TTTTA)n Simple_repeat Simple_repeat 3 77 0 712 213 134 42 chrX 106610904 106611143 -55988787 - MIR SINE MIR 0 262 2 812 210 55 10 chrX 106611277 106611477 -55988453 + MER3 DNA MER1_type 1 209 0 1318 62 23 0 chrX 106611844 106612020 -55987910 - L1PA6 LINE L1 -6 6148 5969 6478 219 84 28 chrX 106612237 106615432 -55984498 - L1MD2 LINE L1 0 6595 3211 4916 143 34 39 chrX 106615443 106616699 -55983231 - L1MB1 LINE L1 0 6168 4920 3335 86 23 8 chrX 106616699 106617177 -55982753 - L1PA11 LINE L1 -3 6171 5687 4916 143 34 39 chrX 106617177 106617335 -55982595 - L1MB1 LINE L1 -1248 4920 4763 3313 239 132 16 chrX 106617331 106617721 -55982209 - L1MD2 LINE L1 -3982 2402 2059 * 2079 108 49 0 chrX 106617721 106618007 -55981923 - AluSq SINE Alu -13 300 1 3313 239 132 16 chrX 106618007 106619170 -55980760 - L1MD2 LINE L1 -4325 2059 777 262 303 25 62 chrX 106619321 106619483 -55980447 - L1M3de LINE L1 -5214 917 762 718 294 30 47 chrX 106619542 106619969 -55979961 - L1M3de LINE L1 -5480 651 11 * 769 186 5 30 chrX 106619966 106620165 -55979765 - L1MB1 LINE L1 -3174 2972 2779 6538 192 141 50 chrX 106620166 106620823 -55979107 - L1MDa LINE L1 -4266 2274 1678 632 79 20 0 chrX 106620823 106620924 -55979006 + L1MA8 LINE L1 6186 6288 -3 6538 192 141 50 chrX 106620924 106622333 -55977597 - L1MDa LINE L1 -4862 1678 21 1719 140 0 3 chrX 106622467 106622753 -55977177 - L1MB2 LINE L1 0 6171 5887 3555 169 59 21 chrX 106622755 106623879 -55976051 - L1MB2 LINE L1 -385 5786 4624 2360 97 25 62 chrX 106623879 106623972 -55975958 - L1MA5A LINE L1 -3 6294 6199 1650 154 28 25 chrX 106623972 106624258 -55975672 + AluJb SINE Alu 12 298 -14 2360 97 25 62 chrX 106624258 106624596 -55975334 - L1MA5A LINE L1 -98 6199 5879 3555 169 59 21 chrX 106624596 106624770 -55975160 - L1MB2 LINE L1 -1547 4624 4458 1878 165 11 0 chrX 106624788 106625073 -55974857 - AluJb SINE Alu -24 288 1 22 35 0 0 chrX 106625675 106625704 -55974226 + AT_rich Low_complexity Low_complexity 1 29 0 724 178 0 0 chrX 106625731 106625849 -55974081 - FLAM_C SINE Alu -25 118 1 21 0 0 0 chrX 106625855 106625876 -55974054 + AT_rich Low_complexity Low_complexity 1 21 0 1721 86 56 4 chrX 106625876 106626143 -55973787 - L1MA2 LINE L1 0 6304 6024 2418 47 0 13 chrX 106626268 106626567 -55973363 - AluY SINE Alu -16 295 1 2914 54 3 0 chrX 106627434 106627788 -55972142 - THE1A LTR MaLR 0 355 1 475 298 47 7 chrX 106628146 106628323 -55971607 - MIR SINE MIR -50 212 30 1848 167 21 34 chrX 106628391 106628769 -55971161 - MER93b LTR ERV1 0 373 1 420 111 0 0 chrX 106628962 106629025 -55970905 + (TG)n Simple_repeat Simple_repeat 2 64 0 1926 212 86 6 chrX 106629149 106629649 -55970281 - L1ME3 LINE L1 0 6162 5623 401 338 93 60 chrX 106630603 106631000 -55968930 + L2 LINE L2 2855 3264 -8 290 278 42 152 chrX 106631054 106631363 -55968567 - L2 LINE L2 -3 3269 2995 224 378 0 0 chrX 106632113 106632187 -55967743 + L2 LINE L2 2575 2648 -666 612 289 25 0 chrX 106632217 106632376 -55967554 + MIR SINE MIR 1 163 -99 1026 159 79 0 chrX 106633054 106633243 -55966687 + MER3 DNA MER1_type 6 209 0 688 218 111 17 chrX 106633251 106633485 -55966445 + MER112 DNA MER1_type 1 256 0 463 241 56 9 chrX 106633485 106633593 -55966337 - MIR SINE MIR -63 145 33 201 229 0 0 chrX 106633626 106633661 -55966269 + polypyrimidine Low_complexity Low_complexity 2 36 0 296 296 116 102 chrX 106635386 106635748 -55964182 + L2 LINE L2 2906 3272 0 180 306 81 0 chrX 106635886 106635948 -55963982 + MIR3 SINE MIR 141 207 -1 3568 197 62 26 chrX 106636167 106637020 -55962910 + L1M4 LINE L1 11 894 -5648 1879 93 0 0 chrX 106638313 106638550 -55961380 - AluSc SINE Alu 0 309 73 31 0 0 0 chrX 106639019 106639050 -55960880 + AT_rich Low_complexity Low_complexity 1 31 0 666 229 129 0 chrX 106639054 106639224 -55960706 - MER21B LTR ERV1 -651 212 21 342 193 0 0 chrX 106639268 106639325 -55960605 - MER21B LTR ERV1 -795 68 12 713 190 21 0 chrX 106640181 106640323 -55959607 + MER69 DNA AcHobo 3 147 -1079 307 260 13 0 chrX 106640318 106640395 -55959535 + MER69 DNA AcHobo 2449 2526 0 * 333 250 200 44 chrX 106640901 106641061 -55958869 + MIR3 SINE MIR 13 197 -11 1049 225 49 12 chrX 106641241 106641485 -55958445 - MIR SINE MIR -1 261 9 644 135 42 0 chrX 106641981 106642110 -55957820 - AluJo SINE Alu 0 315 183 812 165 0 0 chrX 106642110 106642237 -55957693 - AluJo SINE Alu -175 127 1 2631 45 0 0 chrX 106643433 106643742 -55956188 - AluY SINE Alu -2 309 1 22 0 0 0 chrX 106643743 106643765 -55956165 + AT_rich Low_complexity Low_complexity 1 22 0 184 223 43 85 chrX 106644445 106644539 -55955391 - MIR SINE MIR -45 217 128 2080 106 3 0 chrX 106645778 106646071 -55953859 - AluSx SINE Alu -18 294 1 460 280 16 7 chrX 106646411 106646554 -55953376 - MIR SINE MIR -65 143 19 381 296 56 24 chrX 106648684 106648809 -55951121 - L2 LINE L2 -8 3264 3136 524 244 42 0 chrX 106649034 106649153 -55950777 + L2 LINE L2 3189 3312 -1 2204 96 3 0 chrX 106649659 106649952 -55949978 - AluSg SINE Alu -14 296 3 236 30 30 0 chrX 106650018 106650051 -55949879 + (TTA)n Simple_repeat Simple_repeat 2 35 0 575 176 254 0 chrX 106652663 106652805 -55947125 - MER5A DNA MER1_type -1 188 11 329 286 153 15 chrX 106653082 106653278 -55946652 + MIR SINE MIR 34 256 -6 2364 142 6 8 chrX 106653578 106653944 -55945986 - MLT1A1 LTR MaLR 0 365 1 198 103 0 0 chrX 106654413 106654442 -55945488 + (CA)n Simple_repeat Simple_repeat 2 30 0 323 134 49 0 chrX 106654444 106654526 -55945404 + (TA)n Simple_repeat Simple_repeat 1 86 0 333 233 23 35 chrX 106654537 106654623 -55945307 - L1MCa LINE L1 -4350 2076 1992 1158 147 26 11 chrX 106654624 106654981 -55944949 + (TA)n Simple_repeat Simple_repeat 1 362 0 2074 65 0 0 chrX 106654984 106655232 -55944698 - HERVL LTR ERVL -1380 4274 4027 365 278 21 69 chrX 106655237 106655381 -55944549 - MIR SINE MIR -77 185 49 424 254 0 22 chrX 106655687 106655825 -55944105 - L1PA16 LINE L1 -1 6165 6031 * 811 116 29 22 chrX 106655811 106655949 -55943981 + L1PA16 LINE L1 5745 5883 -283 1633 132 0 50 chrX 106655997 106656278 -55943652 + AluJb SINE Alu 1 267 -45 3108 110 50 19 chrX 106656279 106656783 -55943147 - MLT2A1 LTR ERVL 0 515 1 9803 68 8 0 chrX 106656783 106657988 -55941942 - HERVL-A1 LTR ERVL 0 5654 4441 6789 66 12 0 chrX 106657984 106658806 -55941124 - HERVL-A1 LTR ERVL -1083 4571 3740 * 25513 49 5 9 chrX 106658805 106661851 -55938079 - HERVL-A1 LTR ERVL -2622 3032 1 3070 77 72 2 chrX 106661851 106661893 -55938037 - MLT2A1 LTR ERVL 0 444 406 504 0 0 0 chrX 106661893 106661949 -55937981 + (TA)n Simple_repeat Simple_repeat 2 57 0 3070 77 72 2 chrX 106661949 106662321 -55937609 - MLT2A1 LTR ERVL -38 406 1 238 29 0 0 chrX 106662321 106662356 -55937574 + AluJb SINE Alu 264 298 -4 294 29 0 0 chrX 106662385 106662420 -55937510 + (CA)n Simple_repeat Simple_repeat 1 35 0 1121 216 43 20 chrX 106664291 106664370 -55935560 + MIR SINE MIR 2 78 -184 2414 132 22 0 chrX 106664370 106664726 -55935204 - THE1B LTR MaLR 0 364 1 1121 216 43 20 chrX 106664726 106664901 -55935029 + MIR SINE MIR 78 262 0 204 276 0 0 chrX 106665439 106665497 -55934433 + GA-rich Low_complexity Low_complexity 1 58 0 2121 99 13 0 chrX 106666101 106666403 -55933527 - AluSx SINE Alu -6 306 1 207 0 0 0 chrX 106667740 106667763 -55932167 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1364 182 0 0 chrX 106668259 106668479 -55931451 - MER58A DNA MER1_type 0 224 5 300 91 0 0 chrX 106669027 106669071 -55930859 + (CA)n Simple_repeat Simple_repeat 1 44 0 25 31 0 0 chrX 106669170 106669202 -55930728 + AT_rich Low_complexity Low_complexity 1 32 0 349 266 80 0 chrX 106671475 106671588 -55928342 + MER103 DNA DNA 3 124 -42 857 300 19 23 chrX 106673985 106674245 -55925685 - MIR SINE MIR -2 260 2 547 261 158 30 chrX 106674566 106674769 -55925161 - MIR SINE MIR -2 260 32 227 220 34 0 chrX 106674966 106675025 -55924905 - MER117 DNA MER1_type -37 160 100 2041 137 0 3 chrX 106675940 106676369 -55923561 + AluSx SINE Alu 1 428 0 345 296 59 20 chrX 106677051 106677203 -55922727 + L2 LINE L2 3104 3261 -11 847 314 99 32 chrX 106677381 106678189 -55921741 - L2 LINE L2 -6 3307 2422 183 231 51 0 chrX 106679673 106679712 -55920218 - MER5B DNA MER1_type -111 67 27 186 119 17 68 chrX 106680731 106680790 -55919140 + (TA)n Simple_repeat Simple_repeat 1 56 0 1898 158 3 0 chrX 106681204 106681508 -55918422 - AluJb SINE Alu -7 305 1 247 287 9 17 chrX 106681876 106681991 -55917939 - L1ME3A LINE L1 -214 5956 5843 857 212 35 81 chrX 106682434 106682693 -55917237 - MIR SINE MIR -10 252 6 324 303 163 54 chrX 106684868 106685218 -55914712 + L3 LINE CR1 1182 1569 -8 2175 97 3 31 chrX 106685943 106686262 -55913668 + AluSg SINE Alu 1 310 0 333 0 0 0 chrX 106687334 106687371 -55912559 + (TG)n Simple_repeat Simple_repeat 1 37 0 707 258 102 28 chrX 106687492 106687723 -55912207 - MIR SINE MIR -13 249 2 275 351 119 48 chrX 106687813 106688234 -55911696 - L2 LINE L2 -10 3262 2812 657 213 0 8 chrX 106689691 106689818 -55910112 - MIR SINE MIR -108 154 29 1985 95 49 0 chrX 106689916 106690200 -55909730 + AluSq SINE Alu 1 298 -15 337 302 31 21 chrX 106690257 106690353 -55909577 + MIR SINE MIR 19 115 -93 755 185 73 17 chrX 106693733 106693911 -55906019 - MER5A DNA MER1_type 0 189 2 674 254 35 0 chrX 106694044 106694213 -55905717 + MIR3 SINE MIR 30 204 -4 294 29 0 0 chrX 106694317 106694352 -55905578 + (CA)n Simple_repeat Simple_repeat 2 36 0 727 235 118 17 chrX 106695939 106696177 -55903753 + MIR SINE MIR 1 262 0 1602 179 190 20 chrX 106698207 106698597 -55901333 + MSTB2 LTR MaLR 2 457 0 2157 129 7 0 chrX 106698982 106699284 -55900646 + AluSx SINE Alu 1 304 -8 357 337 63 17 chrX 106699706 106699881 -55900049 - L2 LINE L2 -211 3061 2879 183 184 0 0 chrX 106700121 106700159 -55899771 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 630 313 139 10 chrX 106700595 106700883 -55899047 - L3 LINE CR1 -35 1542 1218 244 253 266 0 chrX 106702720 106702799 -55897131 - MER5B DNA MER1_type -78 100 1 435 310 86 11 chrX 106703159 106703333 -55896597 + MER5A DNA MER1_type 2 188 -1 358 298 0 0 chrX 106704559 106704643 -55895287 - L2 LINE L2 -4 3268 3185 442 354 82 0 chrX 106705531 106705689 -55894241 - MIR3 SINE MIR -19 189 19 543 214 10 0 chrX 106708026 106708129 -55891801 + MER97b DNA MER1_type? 1 104 -949 2386 91 0 0 chrX 106709148 106709444 -55890486 - AluSx SINE Alu -16 296 1 192 274 0 68 chrX 106710719 106710792 -55889138 - MIR3 SINE MIR -40 168 101 342 0 0 0 chrX 106711645 106711683 -55888247 + (TG)n Simple_repeat Simple_repeat 2 39 0 216 183 28 84 chrX 106712044 106712115 -55887815 + L2 LINE L2 3205 3271 -1 368 312 36 4 chrX 106713233 106713382 -55886548 - MIR SINE MIR -63 145 28 180 307 73 47 chrX 106713547 106713697 -55886233 + L3b LINE CR1 1315 1468 -115 483 311 11 48 chrX 106713738 106713920 -55886010 + MIR3 SINE MIR 3 171 -62 1587 163 52 3 chrX 106714012 106714319 -55885611 - MER33 DNA MER1_type -2 322 1 2669 118 5 13 chrX 106714378 106714775 -55885155 + L1MA4A LINE L1 5904 6297 -6 209 232 159 0 chrX 106714810 106714879 -55885051 - MIR SINE MIR -93 115 36 242 242 116 21 chrX 106715116 106715211 -55884719 + L2 LINE L2 2436 2539 -775 530 219 81 38 chrX 106715216 106715559 -55884371 + L1MC5 LINE L1 7514 7917 -44 1242 253 116 42 chrX 106715577 106716311 -55883619 + L2 LINE L2 2534 3306 -7 750 254 79 21 chrX 106716365 106716605 -55883325 - MIR SINE MIR -5 257 4 212 77 26 0 chrX 106718846 106718885 -55881045 + (GA)n Simple_repeat Simple_repeat 2 41 0 * 246 176 0 0 chrX 106718882 106718933 -55880997 + GA-rich Low_complexity Low_complexity 2 52 0 412 295 30 45 chrX 106719942 106720142 -55879788 + MER117 DNA MER1_type 1 197 0 1973 218 50 24 chrX 106720488 106720984 -55878946 + L1ME2 LINE L1 5640 6148 -16 245 159 16 63 chrX 106721100 106721109 -55878821 + (TGGA)n Simple_repeat Simple_repeat 2 10 -51 2132 67 4 11 chrX 106721109 106721376 -55878554 + L1PA10 LINE L1 5902 6166 -2 245 159 16 63 chrX 106721376 106721429 -55878501 + (TGGA)n Simple_repeat Simple_repeat 10 61 0 2021 164 30 12 chrX 106721439 106721774 -55878156 - MER2 DNA MER2_type 0 344 4 232 145 53 79 chrX 106721793 106721869 -55878061 + L1MC5 LINE L1 7858 7931 -30 2820 208 13 14 chrX 106721884 106722514 -55877416 + L1M4 LINE L1 2317 2945 -3201 220 288 15 0 chrX 106723267 106723333 -55876597 + GA-rich Low_complexity Low_complexity 3 69 0 372 270 140 6 chrX 106724536 106724693 -55875237 + MIR3 SINE MIR 23 202 -6 377 280 61 0 chrX 106725988 106726120 -55873810 - MER58C DNA MER1_type 0 215 76 655 179 295 35 chrX 106727402 106727575 -55872355 - MER20 DNA MER1_type -1 218 1 1008 305 90 13 chrX 106729342 106729807 -55870123 + LTR33 LTR ERVL 13 513 -8 404 185 32 0 chrX 106730224 106730319 -55869611 + MIR SINE MIR 101 198 -64 2701 205 20 0 chrX 106733855 106734347 -55865583 + LTR53 LTR ERVL 15 516 -3 1983 114 51 0 chrX 106734708 106734981 -55864949 + AluSg SINE Alu 5 291 -19 208 179 26 0 chrX 106736740 106736779 -55863151 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 3233 76 2 7 chrX 106736861 106737268 -55862662 + L1PA7 LINE L1 5750 6154 0 415 238 58 107 chrX 106738838 106739044 -55860886 - MIR3 SINE MIR -3 205 10 381 250 129 8 chrX 106739961 106740093 -55859837 + MIR SINE MIR 67 214 -48 1079 283 58 38 chrX 106740375 106740821 -55859109 + L2 LINE L2 2202 2656 -658 567 317 237 7 chrX 106740838 106741125 -55858805 + L2 LINE L2 2920 3272 0 3128 138 30 38 chrX 106741191 106741799 -55858131 - MER4B LTR ERV1 0 779 3 206 300 164 18 chrX 106741835 106741945 -55857985 - MIR3 SINE MIR -2 206 81 365 238 158 0 chrX 106742082 106742183 -55857747 - L2 LINE L2 0 3313 3197 2368 98 9 6 chrX 106742414 106742732 -55857198 - THE1C LTR MaLR -56 319 1 412 288 123 24 chrX 106743096 106743266 -55856664 + MIR SINE MIR 6 192 -70 853 222 29 6 chrX 106743294 106743465 -55856465 - MER5A DNA MER1_type -14 175 1 185 323 0 0 chrX 106743466 106743528 -55856402 + MIR SINE MIR 201 262 0 746 292 66 33 chrX 106743667 106744033 -55855897 - L2 LINE L2 -641 2673 2296 211 363 50 0 chrX 106744077 106744157 -55855773 + L2 LINE L2 3230 3313 0 180 311 122 0 chrX 106744619 106744693 -55855237 - MIR SINE MIR -110 98 16 414 0 0 0 chrX 106744950 106744996 -55854934 + (CATA)n Simple_repeat Simple_repeat 3 48 0 593 250 120 16 chrX 106745350 106745542 -55854388 - MIR SINE MIR -50 212 1 531 273 35 17 chrX 106746512 106746684 -55853246 + MIR SINE MIR 32 206 -56 225 0 0 0 chrX 106746763 106746788 -55853142 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 319 282 183 15 chrX 106747987 106748136 -55851794 - MIR SINE MIR -46 216 45 274 367 70 19 chrX 106748414 106748572 -55851358 - L2 LINE L2 -19 3253 3088 243 333 70 43 chrX 106748595 106748922 -55851008 - L2 LINE L2 -1762 1552 1217 389 295 133 40 chrX 106750464 106750840 -55849090 + L2 LINE L2 1698 2108 -1206 367 395 39 16 chrX 106750984 106751476 -55848454 + L2 LINE L2 2579 3081 -191 207 189 0 0 chrX 106751689 106751726 -55848204 + CT-rich Low_complexity Low_complexity 1 37 0 623 67 36 27 chrX 106751726 106751960 -55847970 + (TCTA)n Simple_repeat Simple_repeat 1 236 0 210 67 0 0 chrX 106751968 106751985 -55847945 + (TG)n Simple_repeat Simple_repeat 2 21 -10 2237 99 0 10 chrX 106751985 106752277 -55847653 - AluSg1 SINE Alu -18 291 3 210 67 0 0 chrX 106752277 106752289 -55847641 + (TG)n Simple_repeat Simple_repeat 20 31 0 650 308 27 38 chrX 106752413 106753274 -55846656 - L1M3 LINE L1 -367 5804 4936 375 262 23 50 chrX 106753707 106753833 -55846097 - L1M3 LINE L1 -1441 4705 4586 2171 127 0 0 chrX 106753833 106754155 -55845775 + AluSx SINE Alu 1 312 0 375 262 23 50 chrX 106754155 106754249 -55845681 - L1M3 LINE L1 -1560 4586 4491 266 324 108 7 chrX 106754421 106754569 -55845361 + L2 LINE L2 3109 3271 -1 312 183 48 19 chrX 106754835 106754944 -55844986 + L1ME3A LINE L1 5979 6091 -79 187 262 0 0 chrX 106755036 106755078 -55844852 + MIR SINE MIR 195 236 -26 * 891 291 36 0 chrX 106755071 106755322 -55844608 - MIR SINE MIR -1 261 2 272 63 95 11 chrX 106755351 106755446 -55844484 + (TA)n Simple_repeat Simple_repeat 1 103 0 1175 139 14 84 chrX 106755659 106755870 -55844060 - L1MD3 LINE L1 0 7995 7808 647 231 23 0 chrX 106755870 106756000 -55843930 - FLAM_A SINE Alu 0 133 1 1175 139 14 84 chrX 106756000 106756075 -55843855 - L1MD3 LINE L1 -187 7808 7729 839 152 7 0 chrX 106756093 106756244 -55843686 - L1MB3 LINE L1 -2 6181 6030 405 200 133 0 chrX 106756928 106757018 -55842912 - MER5A DNA MER1_type -78 111 10 760 148 112 65 chrX 106757036 106757127 -55842803 - MER5B DNA MER1_type -1 177 92 1626 181 40 43 chrX 106757127 106757502 -55842428 + MLT1A2 LTR MaLR 1 374 0 760 148 112 65 chrX 106757502 106757579 -55842351 - MER5B DNA MER1_type -86 92 1 238 281 62 0 chrX 106759528 106759592 -55840338 - L2 LINE L2 -70 3243 3176 597 259 63 0 chrX 106760001 106760159 -55839771 + MIR SINE MIR 34 201 -61 326 236 0 0 chrX 106760160 106760232 -55839698 - LTR67 LTR ERVL 0 557 486 1051 201 0 0 chrX 106760242 106760436 -55839494 - MER58A DNA MER1_type 0 224 31 757 260 87 26 chrX 106761013 106761244 -55838686 + MIR SINE MIR 2 246 -16 274 341 87 56 chrX 106761396 106761751 -55838179 + L2 LINE L2 2407 2772 -542 316 260 40 10 chrX 106761937 106762037 -55837893 + Charlie7 DNA MER1_type 1 103 -2509 377 144 168 8 chrX 106762054 106762179 -55837751 + Charlie7 DNA MER1_type 2468 2612 0 381 356 6 12 chrX 106762263 106762423 -55837507 + L2 LINE L2 2897 3055 -217 3757 119 4 6 chrX 106762578 106763106 -55836824 + MER1A DNA MER1_type 1 527 0 186 290 87 43 chrX 106763106 106763164 -55836766 + L2 LINE L2 3204 3267 -5 312 311 96 17 chrX 106765271 106765448 -55834482 + L2 LINE L2 2988 3178 -135 * 456 211 163 16 chrX 106765437 106765560 -55834370 - L2 LINE L2 -2 3311 3171 4251 128 3 3 chrX 106765712 106766386 -55833544 - L1MA6 LINE L1 0 6300 5627 4440 136 24 6 chrX 106766388 106767188 -55832742 + L1 LINE L1 3493 4306 -1840 287 378 36 0 chrX 106767349 106767460 -55832470 + L2 LINE L2 3104 3218 -54 237 65 0 0 chrX 106769058 106769089 -55830841 + (A)n Simple_repeat Simple_repeat 1 31 0 434 204 143 0 chrX 106769838 106769936 -55829994 + MIR SINE MIR 35 146 -62 995 214 30 38 chrX 106770234 106770496 -55829434 - MIR SINE MIR 0 262 3 942 176 6 12 chrX 106770496 106770654 -55829276 + MER5A DNA MER1_type 6 164 -25 207 139 0 0 chrX 106770680 106770716 -55829214 + (CTATA)n Simple_repeat Simple_repeat 2 37 0 1375 297 18 9 chrX 106771216 106771650 -55828280 + LTR16B LTR ERVL 25 462 -2 652 260 12 24 chrX 106773388 106773557 -55826373 + MIR3 SINE MIR 37 203 -5 336 239 42 0 chrX 106773657 106773728 -55826202 + MER117 DNA MER1_type 46 119 -78 37 76 0 0 chrX 106773958 106774037 -55825893 + AT_rich Low_complexity Low_complexity 1 79 0 2074 107 81 29 chrX 106774232 106774578 -55825352 + THE1B LTR MaLR 1 364 0 930 195 47 0 chrX 106775003 106775193 -55824737 - MER3 DNA MER1_type -2 207 9 550 273 140 7 chrX 106775282 106775425 -55824505 - MIR3 SINE MIR -27 181 20 435 268 261 7 chrX 106777117 106777255 -55822675 - MER5B DNA MER1_type 0 178 6 337 291 40 27 chrX 106777322 106777470 -55822460 - MER5B DNA MER1_type -12 166 17 386 321 8 15 chrX 106777333 106777464 -55822466 + MER5A DNA MER1_type 36 165 -24 500 242 176 13 chrX 106777549 106777702 -55822228 - MER5B DNA MER1_type 0 178 1 383 282 121 11 chrX 106777710 106777884 -55822046 - MER117 DNA MER1_type 0 197 5 902 198 39 29 chrX 106778766 106778973 -55820957 + MIR SINE MIR 20 228 -34 263 221 15 44 chrX 106779066 106779134 -55820796 + MER5A DNA MER1_type 10 75 -114 225 167 21 42 chrX 106779091 106779139 -55820791 - MER5A DNA MER1_type -23 166 120 * 433 305 80 37 chrX 106779500 106779774 -55820156 - L2 LINE L2 -272 3000 2720 199 304 0 0 chrX 106780592 106780638 -55819292 + L2 LINE L2 3251 3296 -17 2023 193 23 66 chrX 106780782 106781310 -55818620 - MLT1D LTR MaLR 0 505 1 181 85 0 85 chrX 106781479 106781526 -55818404 + (CATA)n Simple_repeat Simple_repeat 2 44 0 657 246 179 9 chrX 106782193 106782417 -55817513 - MIR SINE MIR 0 262 1 21 36 0 0 chrX 106783633 106783661 -55816269 + AT_rich Low_complexity Low_complexity 1 28 0 457 265 94 0 chrX 106783913 106784059 -55815871 + MIR3 SINE MIR 5 165 -65 771 226 248 42 chrX 106784066 106784521 -55815409 + MLT1H LTR MaLR 1 549 0 529 246 15 31 chrX 106786644 106786774 -55813156 + MER5B DNA MER1_type 1 128 -50 21 57 0 0 chrX 106786774 106786809 -55813121 + AT_rich Low_complexity Low_complexity 1 35 0 1728 43 0 0 chrX 106786809 106787020 -55812910 - L1PA5 LINE L1 -2 6152 5942 4591 25 0 0 chrX 106787020 106787572 -55812358 + L1PA5 LINE L1 5309 5860 -294 1167 223 187 57 chrX 106787821 106787958 -55811972 - MLT1E LTR MaLR 0 593 475 2581 218 26 6 chrX 106787958 106788505 -55811425 - MER74A LTR ERVL 0 558 1 1167 223 187 57 chrX 106788505 106788892 -55811038 - MLT1E LTR MaLR -118 475 1 29 0 0 0 chrX 106788898 106788927 -55811003 + AT_rich Low_complexity Low_complexity 1 29 0 256 227 30 15 chrX 106789043 106789109 -55810821 + GA-rich Low_complexity Low_complexity 1 67 0 381 315 9 9 chrX 106789421 106789532 -55810398 + MIR SINE MIR 2 112 -150 436 205 131 8 chrX 106790351 106790473 -55809457 - MIR SINE MIR -8 254 118 342 291 127 0 chrX 106790688 106790798 -55809132 + MIR3 SINE MIR 37 160 -48 42161 37 2 1 chrX 106790888 106797030 -55802900 + L1PA3 LINE L1 6 6152 -3 22 0 0 0 chrX 106797030 106797052 -55802878 + AT_rich Low_complexity Low_complexity 1 22 0 259 193 18 18 chrX 106797142 106797199 -55802731 + MIR3 SINE MIR 149 205 -3 1968 60 4 0 chrX 106798095 106798344 -55801586 + L1PA7 LINE L1 5904 6153 -1 222 37 0 0 chrX 106798397 106798424 -55801506 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1481 225 32 29 chrX 106800268 106800450 -55799480 + MLT1J LTR MaLR 14 194 -317 1846 181 3 0 chrX 106800450 106800743 -55799187 - AluJo SINE Alu -18 294 1 1481 225 32 29 chrX 106800743 106800969 -55798961 + MLT1J LTR MaLR 194 423 -88 3697 223 52 5 chrX 106800969 106801941 -55797989 - L1MEc LINE L1 -5335 1061 44 470 183 0 0 chrX 106801944 106802037 -55797893 + MLT1J LTR MaLR 412 504 -7 320 316 43 26 chrX 106802310 106802427 -55797503 - L2 LINE L2 -4 3268 3150 2049 220 89 24 chrX 106802656 106803115 -55796815 + L1MC4 LINE L1 7322 7841 -201 396 0 0 0 chrX 106803115 106803159 -55796771 + (TG)n Simple_repeat Simple_repeat 2 45 0 2049 220 89 24 chrX 106803159 106803376 -55796554 + L1MC4 LINE L1 7841 8042 0 240 35 0 0 chrX 106803406 106803435 -55796495 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 509 237 119 41 chrX 106803713 106803907 -55796023 - MER63A DNA MER1_type 0 210 2 449 254 0 27 chrX 106804197 106804307 -55795623 + MIR SINE MIR 63 169 -93 207 371 0 23 chrX 106804369 106804501 -55795429 - MIR SINE MIR -6 256 128 334 251 67 78 chrX 106804658 106804837 -55795093 + MIR3 SINE MIR 25 201 -7 609 223 0 0 chrX 106804838 106804950 -55794980 - MER81 DNA DNA -2 112 1 1042 268 45 25 chrX 106805127 106805575 -55794355 - L1ME4a LINE L1 -89 6032 5576 860 181 0 13 chrX 106806696 106806851 -55793079 + FRAM SINE Alu 22 174 -2 243 61 0 0 chrX 106806858 106806891 -55793039 + (A)n Simple_repeat Simple_repeat 1 33 0 580 303 153 22 chrX 106807024 106807252 -55792678 + MIR SINE MIR 5 262 0 737 278 57 24 chrX 106807895 106808143 -55791787 - MIR SINE MIR 0 262 7 186 43 0 0 chrX 106808287 106808310 -55791620 + (TG)n Simple_repeat Simple_repeat 1 23 0 444 302 33 21 chrX 106808492 106808670 -55791260 + MIR SINE MIR 17 192 -48 693 130 8 2 chrX 106808674 106808809 -55791121 + L1MB7 LINE L1 6042 6175 -3 198 242 210 0 chrX 106810575 106810637 -55789293 - MIR SINE MIR -16 246 172 1362 257 52 0 chrX 106810697 106811059 -55788871 - L2 LINE L2 -1227 2087 1707 800 259 15 76 chrX 106811079 106811239 -55788691 - MIR SINE MIR -13 249 110 1400 106 58 0 chrX 106811239 106811446 -55788484 - MER20 DNA MER1_type 0 219 1 800 259 15 76 chrX 106811446 106811548 -55788382 - MIR SINE MIR -152 110 3 237 159 0 0 chrX 106811724 106811768 -55788162 + C-rich Low_complexity Low_complexity 5 48 0 212 0 36 0 chrX 106811835 106811863 -55788067 + (CA)n Simple_repeat Simple_repeat 2 30 0 370 190 90 40 chrX 106811914 106812014 -55787916 + MIR3 SINE MIR 98 202 -6 21 0 0 0 chrX 106814144 106814165 -55785765 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chrX 106814239 106814272 -55785658 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 0 0 0 chrX 106814597 106814627 -55785303 + (TG)n Simple_repeat Simple_repeat 2 31 0 247 259 97 50 chrX 106815468 106815605 -55784325 + MIR SINE MIR 10 147 -61 551 156 18 147 chrX 106815913 106816138 -55783792 - Charlie7 DNA MER1_type 0 2612 2417 * 2051 187 71 12 chrX 106816133 106816614 -55783316 - Charlie7 DNA MER1_type -1893 719 211 411 309 51 22 chrX 106817856 106818034 -55781896 - MIR3 SINE MIR -14 194 12 225 379 10 61 chrX 106818984 106819182 -55780748 - L2 LINE L2 -205 3067 2880 1389 320 114 27 chrX 106819227 106820121 -55779809 - L2 LINE L2 -449 2865 1894 210 148 259 0 chrX 106821170 106821224 -55778706 + MIR SINE MIR 70 137 -71 227 303 40 86 chrX 106822187 106822385 -55777545 - L3b LINE CR1 -97 1486 1298 425 245 38 92 chrX 106822530 106822844 -55777086 + L1ME LINE L1 5485 5781 -340 352 363 45 20 chrX 106823167 106823368 -55776562 + MIR3 SINE MIR 3 208 0 441 0 0 0 chrX 106823674 106823723 -55776207 + (CA)n Simple_repeat Simple_repeat 2 50 0 832 188 0 0 chrX 106823727 106823865 -55776065 - MER46A DNA MER2_type -98 138 1 210 260 23 0 chrX 106824173 106824234 -55775696 + MIR SINE MIR 42 107 -101 911 271 209 25 chrX 106825335 106825766 -55774164 + L2 LINE L2 2804 3313 0 224 299 15 15 chrX 106825767 106825834 -55774096 - MIR SINE MIR -195 67 1 1481 240 88 66 chrX 106827246 106827382 -55772548 - MER20B DNA MER1_type 0 783 651 1125 8 0 0 chrX 106827382 106827510 -55772420 - L1PA4 LINE L1 -8 6147 6020 1481 240 88 66 chrX 106827510 106828111 -55771819 - MER20B DNA MER1_type -132 651 30 231 291 127 0 chrX 106828135 106828214 -55771716 - MIR3 SINE MIR -49 159 71 845 294 55 13 chrX 106828537 106828775 -55771155 + MIR SINE MIR 15 262 0 341 270 113 0 chrX 106828950 106829109 -55770821 + MER20B DNA MER1_type 238 414 -369 1831 115 4 0 chrX 106829123 106829375 -55770555 - AluSx SINE Alu -22 290 38 183 358 36 36 chrX 106829471 106829608 -55770322 + L2 LINE L2 2915 3051 -221 2305 264 61 18 chrX 106830107 106830404 -55769526 - L2 LINE L2 -3 3310 3027 858 193 50 6 chrX 106830404 106830585 -55769345 + MER5A DNA MER1_type 1 189 0 2305 264 61 18 chrX 106830585 106831293 -55768637 - L2 LINE L2 -286 3027 2256 236 284 62 0 chrX 106831293 106831374 -55768556 - MLT1I LTR MaLR -4 405 320 4053 30 0 0 chrX 106831384 106831888 -55768042 - L1P LINE L1 -1077 5069 4566 6517 27 0 0 chrX 106831888 106832692 -55767238 + L1P LINE L1 3782 4585 -1561 3847 269 65 23 chrX 106832915 106832961 -55766969 - L2 LINE L2 -1075 2239 2196 1688 129 75 25 chrX 106832961 106833241 -55766689 + AluJo SINE Alu 1 294 -18 3847 269 65 23 chrX 106833241 106834508 -55765422 - L2 LINE L2 -1118 2196 870 337 237 148 22 chrX 106834882 106835017 -55764913 + MIR SINE MIR 111 262 0 304 273 82 27 chrX 106835067 106835177 -55764753 - MIR3 SINE MIR -46 162 47 187 120 20 20 chrX 106835196 106835246 -55764684 + T-rich Low_complexity Low_complexity 2 51 0 575 305 76 9 chrX 106835694 106835904 -55764026 - MIR SINE MIR -19 243 20 366 134 0 0 chrX 106836029 106836096 -55763834 + (CA)n Simple_repeat Simple_repeat 2 68 0 759 156 5 91 chrX 106836632 106836831 -55763099 + MER53 DNA DNA 8 189 0 283 297 18 25 chrX 106837066 106837238 -55762692 - L2 LINE L2 0 3313 3139 233 192 0 0 chrX 106837543 106837595 -55762335 - L1MB8 LINE L1 0 6178 6127 599 140 6 110 chrX 106838389 106838553 -55761377 + MER53 DNA DNA 8 154 -35 5140 223 115 13 chrX 106839252 106840917 -55759013 + L1ME1 LINE L1 3411 5244 -902 2038 128 17 62 chrX 106840917 106841270 -55758660 + MER1B DNA MER1_type 1 337 0 375 241 62 103 chrX 106841334 106841558 -55758372 + L1ME1 LINE L1 5824 5999 -167 629 206 13 13 chrX 106841558 106841713 -55758217 + L1MA10 LINE L1 6180 6334 0 743 220 24 107 chrX 106841719 106842141 -55757789 + L1MC5 LINE L1 6853 7239 -722 320 222 0 20 chrX 106842222 106842321 -55757609 + GA-rich Low_complexity Low_complexity 4 100 0 1155 198 96 56 chrX 106842325 106842504 -55757426 + L1MC5 LINE L1 7316 7486 -475 4128 129 24 18 chrX 106842504 106843242 -55756688 + L1MA6 LINE L1 5558 6300 0 1155 198 96 56 chrX 106843242 106843634 -55756296 + L1MC5 LINE L1 7486 7910 -51 606 261 39 88 chrX 106843708 106843968 -55755962 - L2 LINE L2 -821 2493 2247 249 143 0 24 chrX 106845034 106845076 -55754854 + L2 LINE L2 3203 3243 -29 1690 176 24 0 chrX 106845147 106845477 -55754453 - MER7A DNA MER2_type -9 337 2 1545 141 0 4 chrX 106845479 106845727 -55754203 - MLT2D LTR ERVL -56 358 112 5073 155 30 12 chrX 106845727 106847087 -55752843 - L1PB4 LINE L1 -4 6152 4767 4582 176 25 1 chrX 106847088 106848017 -55751913 + L1PB4 LINE L1 3787 4737 -1409 680 165 0 8 chrX 106848020 106848153 -55751777 - MLT2D LTR ERVL -282 132 1 315 233 44 56 chrX 106848449 106848539 -55751391 + MIR SINE MIR 46 134 -74 446 250 140 22 chrX 106848602 106848742 -55751188 + MIR SINE MIR 40 192 -63 575 319 60 21 chrX 106849114 106849349 -55750581 - MIR SINE MIR -17 245 2 213 246 0 0 chrX 106849454 106849519 -55750411 + (TA)n Simple_repeat Simple_repeat 2 66 0 633 263 178 0 chrX 106849716 106849929 -55750001 - MIR SINE MIR -2 260 10 2912 148 34 44 chrX 106849946 106850533 -55749397 + L1MB5 LINE L1 5586 6166 -8 183 156 0 0 chrX 106850536 106850568 -55749362 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 182 216 54 0 chrX 106851197 106851234 -55748696 + L2 LINE L2 3269 3307 -6 740 258 64 26 chrX 106851424 106851657 -55748273 + MIR SINE MIR 20 261 -1 970 158 5 65 chrX 106854047 106854262 -55745668 + MER3 DNA MER1_type 8 209 0 263 311 11 0 chrX 106854269 106854359 -55745571 - L1ME LINE L1 -521 5649 5559 287 259 95 43 chrX 106855071 106855187 -55744743 + L2 LINE L2 2937 3058 -214 2101 139 31 28 chrX 106855189 106855549 -55744381 + THE1B LTR MaLR 4 364 0 207 250 54 18 chrX 106856590 106856646 -55743284 + L2 LINE L2 3210 3267 -5 469 304 9 0 chrX 106856725 106856840 -55743090 - L2 LINE L2 -1 3271 3156 279 0 0 0 chrX 106857007 106857038 -55742892 + (TA)n Simple_repeat Simple_repeat 1 31 0 375 23 0 0 chrX 106857038 106857082 -55742848 + (TG)n Simple_repeat Simple_repeat 2 45 0 194 88 0 29 chrX 106858876 106858910 -55741020 + (CTAAA)n Simple_repeat Simple_repeat 1 33 0 1089 153 0 6 chrX 106859684 106859860 -55740070 + MER5B DNA MER1_type 2 176 -2 575 237 21 53 chrX 106860042 106860232 -55739698 - MIR SINE MIR -4 258 75 4413 144 43 17 chrX 106860439 106861252 -55738678 - MER6 DNA MER2_type -3 862 29 188 250 19 19 chrX 106861998 106862050 -55737880 - MIR SINE MIR -133 75 24 318 323 25 32 chrX 106862244 106862402 -55737528 + HAL1b LINE L1 1184 1340 -8 955 215 0 5 chrX 106862802 106862993 -55736937 - MER63A DNA MER1_type 0 210 21 363 262 128 20 chrX 106863109 106863258 -55736672 + MIR3 SINE MIR 37 201 -7 791 245 5 31 chrX 106863270 106863466 -55736464 + MIR SINE MIR 2 192 -70 380 273 0 0 chrX 106863820 106863908 -55736022 - MIR SINE MIR -119 143 56 769 202 56 11 chrX 106864221 106864399 -55735531 + MER5A DNA MER1_type 1 186 -3 28 0 0 0 chrX 106865232 106865260 -55734670 + AT_rich Low_complexity Low_complexity 1 28 0 408 130 0 0 chrX 106865315 106865384 -55734546 + (TG)n Simple_repeat Simple_repeat 2 70 0 253 319 28 35 chrX 106866198 106866339 -55733591 - MIR SINE MIR -19 243 104 271 243 57 0 chrX 106866355 106866425 -55733505 - MIR SINE MIR -16 246 173 287 321 15 46 chrX 106867397 106867528 -55732402 - L2 LINE L2 -229 3043 2917 2234 97 0 27 chrX 106867743 106868043 -55731887 + AluSx SINE Alu 1 292 -20 278 323 21 0 chrX 106868884 106868977 -55730953 - L2 LINE L2 -1 3312 3218 921 295 97 17 chrX 106869304 106869653 -55730277 - L2 LINE L2 -1 3312 2936 812 254 30 5 chrX 106869705 106869906 -55730024 - MIR SINE MIR -28 234 29 1599 44 0 0 chrX 106869911 106870114 -55729816 - L1PA3 LINE L1 -91 6064 5862 826 56 9 0 chrX 106870114 106870213 -55729717 + L1PA3 LINE L1 6044 6152 -3 205 162 0 0 chrX 106870980 106871017 -55728913 + (CATA)n Simple_repeat Simple_repeat 4 40 0 283 288 119 42 chrX 106871320 106871556 -55728374 + L2 LINE L2 2641 2894 -420 266 347 31 71 chrX 106871926 106872122 -55727808 + L2 LINE L2 3036 3223 -49 2218 109 0 10 chrX 106872265 106872567 -55727363 - AluSx SINE Alu -13 299 1 779 264 10 15 chrX 106873065 106873262 -55726668 - MIR SINE MIR -65 197 2 294 361 67 24 chrX 106873265 106873473 -55726457 - L3b LINE CR1 -217 1366 1150 186 233 0 0 chrX 106873466 106873509 -55726421 - L2 LINE L2 -1 3312 3270 * 2313 90 0 7 chrX 106874407 106874708 -55725222 - AluSg SINE Alu -11 299 1 371 284 0 0 chrX 106875839 106875920 -55724010 + MIR SINE MIR 52 132 -76 234 0 0 0 chrX 106875928 106875954 -55723976 + (TG)n Simple_repeat Simple_repeat 1 26 0 315 96 0 0 chrX 106875954 106876006 -55723924 + (GA)n Simple_repeat Simple_repeat 2 53 0 1217 277 78 45 chrX 106876443 106876930 -55723000 - L3 LINE CR1 -104 1473 971 241 326 57 101 chrX 106876926 106877153 -55722777 + L3 LINE CR1 1360 1576 -1 * 185 216 0 0 chrX 106877121 106877158 -55722772 + MIR3 SINE MIR 172 208 0 * 207 235 0 20 chrX 106877377 106877428 -55722502 - MIR SINE MIR -160 102 53 1877 146 10 14 chrX 106877749 106878044 -55721886 - AluSx SINE Alu -18 294 1 197 194 0 0 chrX 106878134 106878170 -55721760 - L2 LINE L2 -4 3268 3233 21 0 0 0 chrX 106878288 106878309 -55721621 + AT_rich Low_complexity Low_complexity 1 21 0 2461 132 32 64 chrX 106878309 106878779 -55721151 - L1PB4 LINE L1 -2 6154 5700 364 227 264 0 chrX 106879542 106879652 -55720278 - MER5A DNA MER1_type -6 183 45 278 397 85 5 chrX 106879686 106879910 -55720020 - L2 LINE L2 -223 3049 2808 423 203 15 64 chrX 106880039 106880213 -55719717 - MIR SINE MIR -61 201 34 692 246 11 16 chrX 106881058 106881241 -55718689 + MIR SINE MIR 75 256 -6 232 239 92 18 chrX 106881515 106881624 -55718306 + MER112 DNA MER1_type 143 259 -1 438 233 90 58 chrX 106881794 106881963 -55717967 + L2 LINE L2 3118 3295 -18 6333 132 50 35 chrX 106881963 106883176 -55716754 - Tigger3b DNA MER2_type -1 1230 1 438 233 90 58 chrX 106883176 106883195 -55716735 + L2 LINE L2 3295 3312 -1 408 316 50 0 chrX 106883317 106883456 -55716474 + L2 LINE L2 3125 3270 -2 343 248 8 78 chrX 106883583 106883624 -55716306 - MIR3 SINE MIR -10 198 156 1186 179 42 0 chrX 106883624 106883836 -55716094 - MER58A DNA MER1_type 0 224 4 343 248 8 78 chrX 106883836 106883923 -55716007 - MIR3 SINE MIR -52 156 79 181 297 47 0 chrX 106884629 106884693 -55715237 + MIR SINE MIR 175 241 -21 253 340 117 64 chrX 106884767 106885049 -55714881 + L2 LINE L2 2898 3194 -78 332 283 46 35 chrX 106885154 106885327 -55714603 - L1ME4a LINE L1 -12 6109 5935 1334 154 4 90 chrX 106885384 106885651 -55714279 + AluJb SINE Alu 61 304 -8 180 0 0 0 chrX 106885729 106885749 -55714181 + (A)n Simple_repeat Simple_repeat 1 20 0 618 282 60 32 chrX 106886630 106886878 -55713052 - MIR SINE MIR -3 259 5 838 150 15 0 chrX 106886994 106887127 -55712803 + BC200 scRNA scRNA 2 136 -64 356 287 8 62 chrX 106887329 106887458 -55712472 - MIR3 SINE MIR -84 124 3 246 244 24 24 chrX 106888160 106888242 -55711688 - MIR SINE MIR -65 197 116 319 286 27 11 chrX 106889578 106889787 -55710143 - MLT1E1 LTR MaLR -392 262 4 1892 143 3 34 chrX 106890186 106890513 -55709417 + AluSq SINE Alu 2 319 0 3195 142 13 15 chrX 106890739 106891260 -55708670 - LTR5 LTR ERVK 0 969 450 25 51 0 0 chrX 106891417 106891456 -55708474 + AT_rich Low_complexity Low_complexity 1 39 0 2437 50 3 41 chrX 106891521 106891841 -55708089 + AluY SINE Alu 1 308 -3 294 152 0 106 chrX 106892152 106892218 -55707712 + MER103 DNA DNA 54 112 -54 1049 273 46 43 chrX 106892376 106892627 -55707303 + MLT1J2 LTR MaLR 7 261 -189 1149 178 37 5 chrX 106892627 106892841 -55707089 + MER58A DNA MER1_type 4 224 0 1049 273 46 43 chrX 106892841 106892937 -55706993 + MLT1J2 LTR MaLR 261 355 -95 235 238 38 25 chrX 106893012 106893092 -55706838 + LTR33 LTR ERVL 1 81 -440 * 374 160 9 132 chrX 106893087 106893125 -55706805 + LTR33 LTR ERVL 426 467 -54 1500 159 3 92 chrX 106893125 106893440 -55706490 - AluJo SINE Alu -15 297 11 374 160 9 132 chrX 106893440 106893507 -55706423 + LTR33 LTR ERVL 467 518 -3 21 36 0 0 chrX 106893671 106893699 -55706231 + AT_rich Low_complexity Low_complexity 1 28 0 702 228 39 11 chrX 106894673 106894853 -55705077 + MIR SINE MIR 78 262 0 205 246 72 0 chrX 106894899 106894968 -55704962 - L3 LINE CR1 -417 1160 1087 591 262 29 68 chrX 106895088 106895367 -55704563 - MER102b DNA MER1_type -21 320 53 949 217 25 20 chrX 106895394 106895592 -55704338 + MIR SINE MIR 63 261 -1 255 389 82 19 chrX 106895744 106896063 -55703867 + L2 LINE L2 2419 2757 -557 643 192 198 28 chrX 106896100 106896277 -55703653 + MIR SINE MIR 44 250 -12 348 179 76 117 chrX 106896409 106896537 -55703393 + L1MEc LINE L1 2022 2154 -4061 2142 102 0 3 chrX 106896537 106896820 -55703110 + AluSx SINE Alu 1 282 -30 348 179 76 117 chrX 106896820 106896835 -55703095 + L1MEc LINE L1 2154 2168 -4047 369 0 0 0 chrX 106896835 106896876 -55703054 + (TAA)n Simple_repeat Simple_repeat 2 42 0 348 179 76 117 chrX 106896876 106897090 -55702840 + L1MEc LINE L1 2168 2327 -3888 732 199 0 6 chrX 106897109 106897270 -55702660 + L1MEc LINE L1 2408 2567 -3648 198 301 0 0 chrX 106897928 106898011 -55701919 + (TCCA)n Simple_repeat Simple_repeat 4 86 0 427 329 6 6 chrX 106898026 106898193 -55701737 + (TCCA)n Simple_repeat Simple_repeat 3 169 0 394 298 44 63 chrX 106898572 106898777 -55701153 - MIR3 SINE MIR -7 201 1 583 159 8 63 chrX 106898861 106898987 -55700943 - Tigger7 DNA MER2_type 0 2487 2369 2092 195 33 11 chrX 106899061 106899583 -55700347 + L1MB8 LINE L1 4327 4859 -1287 33415 107 14 30 chrX 106899591 106905848 -55694082 - L1PA7 LINE L1 0 6154 1 4524 182 16 25 chrX 106905851 106906475 -55693455 + L1MB8 LINE L1 4848 5476 -702 1961 208 6 3 chrX 106906475 106906836 -55693094 + MLT1A1 LTR MaLR 4 365 0 4524 182 16 25 chrX 106906836 106907541 -55692389 + L1MB8 LINE L1 5476 6173 -5 306 109 0 0 chrX 106907577 106907623 -55692307 - MADE1 DNA Mariner 0 80 35 5460 50 6 0 chrX 106907636 106908310 -55691620 + L1PA7 LINE L1 5477 6154 0 286 68 0 23 chrX 106908322 106908366 -55691564 - MADE1 DNA Mariner -37 43 1 454 349 33 7 chrX 106908426 106908578 -55691352 + L2 LINE L2 3117 3272 0 438 181 11 11 chrX 106908646 106908740 -55691190 + L1ME3 LINE L1 5880 5973 -189 253 91 0 68 chrX 106908745 106908789 -55691141 + L1ME3 LINE L1 6027 6067 -95 28 79 0 0 chrX 106908815 106908878 -55691052 + AT_rich Low_complexity Low_complexity 1 63 0 207 154 26 64 chrX 106909926 106910004 -55689926 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 266 320 49 16 chrX 106910677 106910799 -55689131 + L2 LINE L2 2972 3097 -175 651 179 236 14 chrX 106912304 106912516 -55687414 + L1ME3A LINE L1 5912 6170 0 198 318 0 30 chrX 106913120 106913186 -55686744 - L2 LINE L2 0 3272 3209 297 151 0 0 chrX 106914543 106914596 -55685334 + (TG)n Simple_repeat Simple_repeat 2 54 0 736 255 120 30 chrX 106915072 106915546 -55684384 + L1ME4a LINE L1 5597 6113 -8 854 302 11 8 chrX 106915728 106916089 -55683841 - L1MEd LINE L1 -2238 3891 3530 898 270 92 2 chrX 106916120 106916590 -55683340 - L1MEd LINE L1 -2730 3399 2888 658 308 56 16 chrX 106916595 106916969 -55682961 - L1MEd LINE L1 -3271 2858 2470 441 0 0 0 chrX 106917106 106917155 -55682775 + (TC)n Simple_repeat Simple_repeat 1 49 0 473 299 46 30 chrX 106917163 106917502 -55682428 - L1MEd LINE L1 -4870 1249 926 227 364 62 19 chrX 106917612 106917821 -55682109 - L1MEd LINE L1 -5339 780 563 701 194 16 0 chrX 106917960 106918084 -55681846 + MSTD LTR MaLR 271 396 0 186 71 0 0 chrX 106918894 106918922 -55681008 + (CA)n Simple_repeat Simple_repeat 2 29 0 2050 104 47 3 chrX 106919058 106919357 -55680573 - AluSx SINE Alu 0 312 1 443 302 160 52 chrX 106919446 106919848 -55680082 + L2 LINE L2 2113 2470 -844 1631 190 0 10 chrX 106919848 106920143 -55679787 - AluJo SINE Alu -20 292 1 443 302 160 52 chrX 106920143 106920476 -55679454 + L2 LINE L2 2470 2928 -386 244 0 0 0 chrX 106920491 106920524 -55679406 - L1MA3 LINE L1 0 6305 6273 204 271 17 0 chrX 106920722 106920781 -55679149 + L2 LINE L2 3162 3221 -92 231 146 0 0 chrX 106920810 106920851 -55679079 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 249 309 175 0 chrX 106921368 106921465 -55678465 - L2 LINE L2 -8 3264 3151 455 211 37 112 chrX 106921740 106921901 -55678029 - MIR SINE MIR -13 249 101 1463 197 0 41 chrX 106921901 106922262 -55677668 + AluJb SINE Alu 1 349 0 2307 103 3 0 chrX 106922552 106922854 -55677076 + AluSp SINE Alu 1 303 -10 596 278 24 28 chrX 106923294 106923506 -55676424 - MIR SINE MIR -42 220 10 280 215 140 65 chrX 106925342 106925449 -55674481 - MIR SINE MIR -89 173 59 1704 82 0 0 chrX 106927320 106927540 -55672390 - AluY SINE Alu -1 310 91 1786 172 0 38 chrX 106928370 106928690 -55671240 + AluJo SINE Alu 1 308 -4 199 311 44 11 chrX 106929095 106929185 -55670745 + L2 LINE L2 3008 3100 -213 293 313 34 50 chrX 106929271 106929476 -55670454 + MIR SINE MIR 11 206 -56 542 268 46 26 chrX 106930008 106930161 -55669769 + MIR SINE MIR 17 172 -90 216 295 13 13 chrX 106931158 106931236 -55668694 + MIR SINE MIR 158 235 -27 207 69 0 0 chrX 106931268 106931297 -55668633 + (TAG)n Simple_repeat Simple_repeat 1 29 0 247 175 0 0 chrX 106932286 106932326 -55667604 + L1MC5 LINE L1 7820 7859 -102 330 351 0 27 chrX 106933461 106933572 -55666358 + MIR3 SINE MIR 9 116 -92 1281 251 61 21 chrX 106933969 106934348 -55665582 + MLT1I LTR MaLR 8 401 -8 280 227 234 31 chrX 106935127 106935255 -55664675 - MIR SINE MIR 0 262 109 234 356 81 19 chrX 106935226 106935487 -55664443 - L2 LINE L2 -1254 2060 1784 * 399 257 15 29 chrX 106935828 106935964 -55663966 + L1MC4 LINE L1 7769 7902 -140 1753 165 44 10 chrX 106935966 106936263 -55663667 + AluJo SINE Alu 1 307 -5 259 143 0 0 chrX 106936263 106936312 -55663618 + L1MC4 LINE L1 7989 8037 -5 541 301 48 44 chrX 106937212 106937441 -55662489 - MIR SINE MIR 0 262 33 645 361 5 0 chrX 106937948 106938142 -55661788 + MER91A DNA MER1_type 2 196 0 1753 145 21 3 chrX 106938607 106938890 -55661040 + AluJb SINE Alu 1 288 -24 198 0 0 0 chrX 106938900 106938922 -55661008 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 339 25 0 0 chrX 106939036 106939076 -55660854 + (TG)n Simple_repeat Simple_repeat 1 40 0 325 81 32 0 chrX 106939076 106939138 -55660792 + (GA)n Simple_repeat Simple_repeat 2 65 0 2066 83 0 4 chrX 106939324 106939590 -55660340 + AluY SINE Alu 1 265 -46 363 23 0 0 chrX 106939594 106939638 -55660292 + (CA)n Simple_repeat Simple_repeat 2 45 0 304 154 0 0 chrX 106941190 106941242 -55658688 + L2 LINE L2 3261 3312 -1 201 315 39 96 chrX 106941537 106941715 -55658215 - L2 LINE L2 -587 2727 2560 307 267 242 8 chrX 106941722 106941842 -55658088 + MIR SINE MIR 65 212 -50 1568 108 31 0 chrX 106941940 106942163 -55657767 + MER30 DNA MER1_type 1 230 0 985 115 0 13 chrX 106942412 106942568 -55657362 + L1PA13 LINE L1 6009 6162 -1 669 213 5 38 chrX 106942577 106942788 -55657142 + L1MEc LINE L1 957 1160 -5236 * 1712 223 80 99 chrX 106942777 106943552 -55656378 + L1MD2 LINE L1 5595 6354 -5 425 297 0 31 chrX 106943568 106943696 -55656234 - MIR SINE MIR -133 129 6 338 319 48 112 chrX 106943959 106944949 -55654981 - L2 LINE L2 -181 3091 2169 525 302 0 0 chrX 106944990 106945106 -55654824 + L2 LINE L2 3153 3268 -4 7992 132 15 4 chrX 106945154 106946382 -55653548 + Ricksha_b DNA DNA 3 1243 -11 2458 84 0 0 chrX 106946426 106946737 -55653193 + AluSx SINE Alu 1 311 -1 225 399 32 0 chrX 106946788 106946946 -55652984 - L2 LINE L2 -1340 1974 1812 2058 136 10 3 chrX 106947386 106947696 -55652234 - AluJo SINE Alu 0 312 1 459 183 151 0 chrX 106947719 106947812 -55652118 + FAM SINE Alu 4 110 -75 925 168 56 23 chrX 106948098 106948166 -55651764 - Charlie4 DNA MER1_type -1 1960 1896 971 176 11 17 chrX 106948166 106948342 -55651588 - FAM SINE Alu 0 175 1 925 168 56 23 chrX 106948342 106948487 -55651443 - Charlie4 DNA MER1_type -65 1896 1740 241 155 35 0 chrX 106948638 106948696 -55651234 + (TA)n Simple_repeat Simple_repeat 2 61 0 29 28 0 0 chrX 106950769 106950805 -55649125 + AT_rich Low_complexity Low_complexity 1 36 0 932 266 16 35 chrX 106956645 106956901 -55643029 - MIR SINE MIR -10 252 2 3429 184 43 34 chrX 106957575 106958085 -55641845 - L1MD3 LINE L1 -525 7470 6853 2501 62 0 10 chrX 106958085 106958391 -55641539 - AluY SINE Alu -8 303 1 3429 184 43 34 chrX 106958391 106958681 -55641249 - L1MD3 LINE L1 -1142 6853 6567 425 286 133 30 chrX 106958755 106958989 -55640941 + MIR SINE MIR 5 262 0 185 225 0 0 chrX 106959239 106959279 -55640651 - L2 LINE L2 -3 3310 3271 256 286 71 0 chrX 106959343 106959413 -55640517 - L2 LINE L2 -50 3263 3189 25 31 0 0 chrX 106959806 106959838 -55640092 + AT_rich Low_complexity Low_complexity 1 32 0 358 261 123 53 chrX 106960055 106960373 -55639557 - L1ME4a LINE L1 -198 5923 5584 459 292 31 0 chrX 106960448 106960578 -55639352 - MIR SINE MIR -90 172 39 451 132 15 0 chrX 106961451 106961519 -55638411 - L1ME LINE L1 -538 5583 5515 24 32 0 0 chrX 106962077 106962108 -55637822 + AT_rich Low_complexity Low_complexity 1 31 0 1039 293 43 34 chrX 106962552 106962989 -55636941 - MLT1L LTR MaLR 0 615 175 4459 184 87 101 chrX 106963335 106963420 -55636510 + Charlie1a DNA MER1_type 1 86 -2675 1839 162 19 48 chrX 106963420 106963796 -55636134 - MLT1A1 LTR MaLR 0 365 1 4459 184 87 101 chrX 106963796 106964134 -55635796 + Charlie1a DNA MER1_type 86 427 -2334 820 159 0 0 chrX 106964134 106964266 -55635664 - FLAM_C SINE Alu -11 132 1 4459 184 87 101 chrX 106964266 106964725 -55635205 + Charlie1a DNA MER1_type 427 891 -1870 13201 31 13 0 chrX 106964725 106967073 -55632857 - L1PA3 LINE L1 -3 6152 3778 4459 184 87 101 chrX 106967073 106967533 -55632397 + Charlie1a DNA MER1_type 891 1455 0 250 358 33 25 chrX 106967884 106968004 -55631926 + L2 LINE L2 3190 3310 -3 2254 101 10 0 chrX 106968142 106968449 -55631481 - AluSq SINE Alu -3 310 1 187 295 27 43 chrX 106968449 106968607 -55631323 + L3 LINE CR1 1371 1568 -9 758 142 25 0 chrX 106968665 106968785 -55631145 - FLAM_C SINE Alu -10 123 1 1738 205 72 18 chrX 106968809 106969252 -55630678 - L1ME1 LINE L1 -9 6157 5691 475 153 11 176 chrX 106969273 106969449 -55630481 - L1ME2 LINE L1 -7 6157 6011 1467 270 89 13 chrX 106969554 106970162 -55629768 - L1ME1 LINE L1 -1196 4950 4297 456 181 52 17 chrX 106970182 106970298 -55629632 - L1ME1 LINE L1 -1 6234 6115 852 264 80 13 chrX 106970301 106970676 -55629254 - L1ME1 LINE L1 -1857 4289 3890 1237 172 155 69 chrX 106970676 106971024 -55628906 - MER76 LTR ERV 0 688 311 960 218 20 0 chrX 106971025 106971222 -55628708 - L1ME1 LINE L1 -462 5773 5573 264 143 48 32 chrX 106971216 106971279 -55628651 + L1ME1 LINE L1 6100 6163 -3 * 226 268 0 0 chrX 106971362 106971444 -55628486 - L1ME1 LINE L1 -733 5578 5497 1371 239 18 3 chrX 106971461 106971792 -55628138 - L1ME1 LINE L1 -20 6146 5811 * 3300 221 85 32 chrX 106971778 106972571 -55627359 - L1ME1 LINE L1 -819 5396 4520 2500 41 7 0 chrX 106972571 106972865 -55627065 + AluY SINE Alu 1 296 -15 3300 221 85 32 chrX 106972865 106973240 -55626690 - L1ME1 LINE L1 -1695 4520 4166 282 274 26 18 chrX 106973238 106973351 -55626579 - L1ME1 LINE L1 -6226 170 57 * 347 188 83 10 chrX 106973359 106973455 -55626475 - L1ME1 LINE L1 -383 5738 5636 30 0 0 0 chrX 106973827 106973857 -55626073 + AT_rich Low_complexity Low_complexity 1 30 0 2098 108 0 56 chrX 106974357 106974680 -55625250 - AluSq SINE Alu -8 305 1 2047 106 24 3 chrX 106975474 106975767 -55624163 - AluSq SINE Alu -14 299 1 24 67 0 0 chrX 106976174 106976219 -55623711 + AT_rich Low_complexity Low_complexity 1 45 0 1715 174 34 0 chrX 106976273 106976571 -55623359 - AluJb SINE Alu 0 312 5 180 265 60 72 chrX 106977840 106977923 -55622007 + MIR SINE MIR 2 83 -179 200 233 93 0 chrX 106977940 106977983 -55621947 + MIR SINE MIR 203 249 -13 193 222 0 0 chrX 106977951 106977987 -55621943 + L2 LINE L2 3263 3298 -15 * 23 33 0 0 chrX 106978180 106978210 -55621720 + AT_rich Low_complexity Low_complexity 1 30 0 668 246 108 5 chrX 106978782 106978977 -55620953 - L1ME1 LINE L1 -5 6161 5947 * 881 231 139 41 chrX 106978973 106979665 -55620265 - L1ME1 LINE L1 -743 5403 4943 536 188 36 0 chrX 106979674 106979786 -55620144 - L1MB5 LINE L1 -8 6166 6051 3075 181 31 35 chrX 106979789 106980473 -55619457 - L1MB5 LINE L1 -172 6002 5322 1197 166 99 32 chrX 106980478 106980731 -55619199 - AluJo SINE Alu -20 292 23 8132 246 38 57 chrX 106980732 106981791 -55618139 - L1MB5 LINE L1 -820 5326 4249 2408 124 0 8 chrX 106981791 106982155 -55617775 - MER46B DNA MER2_type 0 236 1 8132 246 38 57 chrX 106982155 106983042 -55616888 - L1MB5 LINE L1 -1897 4249 3347 1633 138 113 22 chrX 106983042 106983317 -55616613 - AluJo SINE Alu -12 300 1 8132 246 38 57 chrX 106983317 106983557 -55616373 - L1MB5 LINE L1 -2799 3347 3104 5975 213 11 1 chrX 106983557 106985646 -55614284 - L1PA16 LINE L1 -8 6158 4016 8132 246 38 57 chrX 106985646 106986608 -55613322 - L1MB5 LINE L1 -3042 3104 2233 2060 156 23 0 chrX 106986616 106986962 -55612968 - L1M2 LINE L1 -630 5682 5329 6239 124 24 64 chrX 106986970 106987468 -55612462 + Tigger3b DNA MER2_type 137 654 -2374 330 26 0 0 chrX 106987468 106987507 -55612423 + (TA)n Simple_repeat Simple_repeat 1 39 0 2228 104 0 10 chrX 106987507 106987804 -55612126 - AluSx SINE Alu -18 294 1 6239 124 24 64 chrX 106987804 106988445 -55611485 + Tigger3b DNA MER2_type 652 1231 0 3321 179 23 0 chrX 106988445 106989143 -55610787 - L1M2 LINE L1 -958 5188 4449 778 261 4 66 chrX 106989147 106989160 -55610770 - L1M4 LINE L1 -1869 4277 4265 210 37 0 0 chrX 106989160 106989187 -55610743 + (TAG)n Simple_repeat Simple_repeat 3 29 0 778 261 4 66 chrX 106989187 106989445 -55610485 - L1M4 LINE L1 -1881 4265 4023 541 172 52 26 chrX 106989445 106989561 -55610369 + MER20 DNA MER1_type 1 119 -100 408 255 57 14 chrX 106989600 106989741 -55610189 + MER46C DNA MER2_type 61 207 -131 435 182 0 100 chrX 106989833 106989943 -55609987 + MER20 DNA MER1_type 121 219 0 338 227 73 18 chrX 106989946 106990056 -55609874 - L1M4 LINE L1 -2119 4027 3912 31 0 0 0 chrX 106990111 106990142 -55609788 + AT_rich Low_complexity Low_complexity 1 31 0 4313 82 18 20 chrX 106990150 106990812 -55609118 - L1MA2 LINE L1 0 7723 7063 266 111 0 22 chrX 106990812 106990857 -55609073 - MLT2A1 LTR ERVL 0 453 410 * 1804 85 31 11 chrX 106990850 106991110 -55608820 - MLT2A1 LTR ERVL -179 265 1 44358 67 10 2 chrX 106991110 106991404 -55608526 - HERVL-A1-A1 LTR ERVL 0 5654 5364 2380 90 0 7 chrX 106991404 106991714 -55608216 + AluSx SINE Alu 1 308 -4 44358 67 10 2 chrX 106991714 106997032 -55602898 - HERVL-A1-A1 LTR ERVL -290 5364 1 2869 84 70 7 chrX 106997032 106997076 -55602854 - MLT2A1 LTR ERVL 0 444 404 399 41 0 0 chrX 106997076 106997125 -55602805 + (TG)n Simple_repeat Simple_repeat 2 50 0 2869 84 70 7 chrX 106997125 106997496 -55602434 - MLT2A1 LTR ERVL -40 404 3 2491 125 15 5 chrX 106997498 106997995 -55601935 - L1MA2 LINE L1 -655 7069 6571 * 13283 163 32 11 chrX 106997968 107000273 -55599657 - L1MA2 LINE L1 -5195 2370 16 3546 65 0 19 chrX 107000294 107000771 -55599159 - L1PB1 LINE L1 0 6151 5684 193 51 51 26 chrX 107000778 107000817 -55599113 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2130 75 3 60 chrX 107000817 107000982 -55598948 - L1PB1 LINE L1 -472 5679 5541 2301 104 7 0 chrX 107000982 107001291 -55598639 + AluSp SINE Alu 1 311 -2 2130 75 3 60 chrX 107001291 107001459 -55598471 - L1PB1 LINE L1 -610 5541 5365 1519 257 94 9 chrX 107002115 107002574 -55597356 - L1MC4a LINE L1 -1944 5864 5367 240 294 147 29 chrX 107003192 107003362 -55596568 + L2 LINE L2 3124 3313 0 1380 207 41 3 chrX 107003810 107004105 -55595825 - L1MD2 LINE L1 -1 6358 6053 698 285 10 25 chrX 107004100 107004300 -55595630 - L1MD2 LINE L1 -2134 5674 5478 * 490 167 136 8 chrX 107004301 107004433 -55595497 - L1MD1 LINE L1 -205 6037 5889 385 66 16 0 chrX 107004433 107004494 -55595436 - Tigger3(Golem) DNA MER2_type -2770 259 198 22 35 0 0 chrX 107004501 107004530 -55595400 + AT_rich Low_complexity Low_complexity 1 29 0 3516 89 0 4 chrX 107004531 107005014 -55594916 - L1PA14 LINE L1 -14 6147 5667 3704 225 63 44 chrX 107005317 107006442 -55593488 + L1M4 LINE L1 3 1148 -5394 26 30 0 0 chrX 107007946 107007979 -55591951 + AT_rich Low_complexity Low_complexity 1 33 0 1830 236 61 35 chrX 107008792 107009445 -55590485 + L1M4 LINE L1 5195 5864 -780 3313 133 37 13 chrX 107009445 107009980 -55589950 + ERVL LTR ERVL 3922 4469 -1295 2080 234 84 16 chrX 107009980 107010722 -55589208 - L1M4 LINE L1 -3040 3106 2315 2975 199 14 0 chrX 107010764 107011357 -55588573 - L1MB7 LINE L1 -46 6138 5538 465 286 79 52 chrX 107011356 107011723 -55588207 - L1MCc LINE L1 -6014 409 33 * 4084 256 60 31 chrX 107011740 107013482 -55586448 - L1MB7 LINE L1 -848 5298 3507 521 243 21 0 chrX 107013488 107013632 -55586298 - L1ME4a LINE L1 -219 5902 5756 353 262 28 21 chrX 107013656 107013801 -55586129 + (TA)n Simple_repeat Simple_repeat 2 147 0 247 289 0 0 chrX 107013848 107013924 -55586006 + L1ME4a LINE L1 5974 6049 -72 2300 73 3 0 chrX 107016131 107016457 -55583473 - AluSp SINE Alu 0 327 1 360 249 50 65 chrX 107016511 107016712 -55583218 - L1ME3A LINE L1 -8 6162 5965 788 282 46 41 chrX 107016792 107017161 -55582769 - L1MC5 LINE L1 -430 7531 7161 6746 146 19 8 chrX 107017163 107019265 -55580665 + L1PB3 LINE L1 4024 6154 0 1541 227 14 77 chrX 107019276 107019321 -55580609 - L1MC5 LINE L1 -785 7176 7130 1318 220 73 17 chrX 107019321 107019675 -55580255 + MLT1A2 LTR MaLR 1 374 0 1541 227 14 77 chrX 107019675 107020189 -55579741 - L1MC5 LINE L1 -831 7130 6652 509 44 15 0 chrX 107020208 107020276 -55579654 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2036 140 0 56 chrX 107020280 107020636 -55579294 - MER1B DNA MER1_type 0 337 2 827 168 14 0 chrX 107020638 107020781 -55579149 - AluJb SINE Alu -30 282 138 251 206 0 32 chrX 107020783 107020846 -55579084 - L1MC4a LINE L1 -1150 6658 6598 * 10092 145 14 32 chrX 107020814 107021399 -55578531 + L1PA14 LINE L1 3374 3968 -2193 2172 109 0 0 chrX 107021399 107021692 -55578238 + AluY SINE Alu 1 293 -18 10092 145 14 32 chrX 107021692 107023070 -55576860 + L1PA14 LINE L1 3968 5265 -896 1661 86 25 0 chrX 107023070 107023313 -55576617 + L1PA13 LINE L1 5911 6160 -3 10092 145 14 32 chrX 107023313 107024190 -55575740 + L1PA14 LINE L1 5265 6156 -5 234 190 35 35 chrX 107024231 107024289 -55575641 - L1MC4a LINE L1 -1204 6604 6547 1031 115 52 16 chrX 107024720 107024912 -55575018 - L1MA5A LINE L1 0 6297 6099 386 224 0 0 chrX 107024912 107024990 -55574940 - L1MC4 LINE L1 -34 8008 7831 1908 226 28 20 chrX 107025188 107025689 -55574241 + L1M4 LINE L1 4497 5001 -1145 1116 120 14 57 chrX 107025690 107025899 -55574031 + L1MB8 LINE L1 5920 6119 -59 962 229 74 39 chrX 107026021 107026384 -55573546 - L1ME2 LINE L1 -10 6154 5779 31 0 0 0 chrX 107026390 107026421 -55573509 + AT_rich Low_complexity Low_complexity 1 31 0 3443 77 7 0 chrX 107026421 107026877 -55573053 - MER11C LTR ERVK -96 975 517 619 234 18 12 chrX 107026902 107027069 -55572861 - L1ME2 LINE L1 -415 5749 5582 891 47 0 0 chrX 107027075 107027181 -55572749 + AluY SINE Alu 187 292 -19 1712 202 62 50 chrX 107027187 107028030 -55571900 - L1ME2 LINE L1 -586 5578 4725 231 299 10 41 chrX 107030795 107030892 -55569038 + MIR SINE MIR 100 193 -69 184 302 147 35 chrX 107031409 107031525 -55568405 + L3 LINE CR1 1414 1542 -35 246 284 45 34 chrX 107032876 107032964 -55566966 + MIR3 SINE MIR 111 199 -9 199 313 89 28 chrX 107032977 107033156 -55566774 - L2 LINE L2 -787 2527 2338 284 245 152 55 chrX 107033351 107033588 -55566342 - HAL1 LINE L1 -219 2288 2029 507 259 63 0 chrX 107033703 107033877 -55566053 - L1ME2 LINE L1 -1780 4366 4182 303 283 152 0 chrX 107033940 107034078 -55565852 - L1ME2 LINE L1 -2400 3746 3588 868 278 129 14 chrX 107034098 107034609 -55565321 - L1ME2 LINE L1 -3329 2817 2248 240 264 55 22 chrX 107034720 107034811 -55565119 - L1MC4 LINE L1 -20 8022 7929 431 291 64 18 chrX 107034870 107035090 -55564840 - L1MC4 LINE L1 -124 7918 7689 1541 256 78 18 chrX 107035143 107035632 -55564298 + LTR40a LTR ERVL 2 519 0 4941 196 53 34 chrX 107035669 107036753 -55563177 - L1MB8 LINE L1 0 6989 5927 2212 84 10 7 chrX 107036753 107037049 -55562881 - AluSx SINE Alu -15 297 1 4941 196 53 34 chrX 107037049 107037916 -55562014 - L1MB8 LINE L1 -1062 5927 4989 674 43 0 11 chrX 107037916 107038009 -55561921 + L1MA1 LINE L1 6211 6302 0 4941 196 53 34 chrX 107038009 107038222 -55561708 - L1MB8 LINE L1 -2000 4989 4782 3838 245 35 8 chrX 107038270 107039590 -55560340 - L1MB8 LINE L1 -2887 4070 2762 2842 260 39 20 chrX 107039600 107040301 -55559629 - L1MB8 LINE L1 -6135 724 11 439 143 33 0 chrX 107040336 107040427 -55559503 + CT-rich Low_complexity Low_complexity 3 96 0 1114 84 18 0 chrX 107040436 107040603 -55559327 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 229 271 21 0 chrX 107040605 107040628 -55559302 - L1MC4 LINE L1 -443 7599 7578 1632 207 0 6 chrX 107040628 107040942 -55558988 - AluJb SINE Alu 0 312 1 229 271 21 0 chrX 107040942 107041014 -55558916 - L1MC4 LINE L1 -464 7578 7502 13072 192 41 45 chrX 107041366 107044218 -55555712 + L1MA3 LINE L1 691 3555 -3450 7725 18 0 3 chrX 107044218 107045278 -55554652 + L1PA3 LINE L1 5132 6188 0 13072 192 41 45 chrX 107045278 107048498 -55551432 + L1MA3 LINE L1 3555 6733 -272 382 335 59 17 chrX 107048497 107048736 -55551194 - L1MCa LINE L1 -4826 1600 1352 * 692 278 36 58 chrX 107048737 107049269 -55550661 - L1MCa LINE L1 -4918 1498 979 260 359 30 36 chrX 107049812 107049979 -55549951 + MER5A DNA MER1_type 14 179 -10 272 305 173 15 chrX 107050031 107050132 -55549798 - L1M4 LINE L1 -1184 4962 4878 198 0 0 0 chrX 107050132 107050154 -55549776 + (TG)n Simple_repeat Simple_repeat 1 22 0 272 305 173 15 chrX 107050154 107050249 -55549681 - L1M4 LINE L1 -1268 4878 4735 371 229 33 41 chrX 107050632 107050754 -55549176 - MIR3 SINE MIR -1 207 87 23 33 0 0 chrX 107051185 107051215 -55548715 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 107051842 107051867 -55548063 + AT_rich Low_complexity Low_complexity 1 25 0 281 321 179 14 chrX 107051876 107052016 -55547914 + L2 LINE L2 3102 3264 -8 24 0 0 0 chrX 107053730 107053754 -55546176 + AT_rich Low_complexity Low_complexity 1 24 0 493 236 118 14 chrX 107053845 107053989 -55545941 - MER58C DNA MER1_type -4 211 53 259 135 0 0 chrX 107053996 107054033 -55545897 + MER41A LTR ERV1 518 554 0 1841 139 37 0 chrX 107054318 107054612 -55545318 - AluSx SINE Alu -7 305 1 406 250 18 27 chrX 107054910 107055022 -55544908 - MER103 DNA DNA -50 116 6 1305 298 80 48 chrX 107055168 107055968 -55543962 + L1ME1 LINE L1 11 836 -5234 42789 51 1 0 chrX 107055982 107062128 -55537802 - L1PA5 LINE L1 -1 6153 3 1200 323 21 23 chrX 107062166 107063011 -55536919 + L1ME1 LINE L1 904 1643 -4437 557 183 10 0 chrX 107063002 107063106 -55536824 + L1ME1 LINE L1 2394 2498 -3582 * 3733 251 88 37 chrX 107063111 107064735 -55535195 + L1ME1 LINE L1 2553 4259 -1821 5029 117 32 66 chrX 107064755 107065172 -55534758 + L1PA16 LINE L1 4880 5310 -856 198 0 0 0 chrX 107065172 107065194 -55534736 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5029 117 32 66 chrX 107065194 107066092 -55533838 + L1PA16 LINE L1 5310 6163 -3 1370 135 12 33 chrX 107066092 107066336 -55533594 - L1MD2 LINE L1 -429 5930 5692 3663 213 57 33 chrX 107066339 107068041 -55531889 + L1ME1 LINE L1 4250 6008 -92 2014 160 13 27 chrX 107068043 107068417 -55531513 - THE1C LTR MaLR 0 375 7 1869 154 0 3 chrX 107068451 107068737 -55531193 + AluJb SINE Alu 1 285 -27 677 251 31 0 chrX 107069004 107069167 -55530763 + MER5A DNA MER1_type 11 178 -11 200 292 194 0 chrX 107069819 107069891 -55530039 - L2 LINE L2 -1 3271 3186 586 277 23 6 chrX 107070022 107070199 -55529731 + MIR SINE MIR 83 262 0 219 273 45 0 chrX 107070206 107070272 -55529658 - L2 LINE L2 -973 2341 2273 2145 8 4 0 chrX 107071812 107072058 -55527872 - L1PA5 LINE L1 -14 6140 5894 1771 204 82 21 chrX 107073280 107073862 -55526068 - MER76 LTR ERV 0 688 12 809 348 22 13 chrX 107074054 107074502 -55525428 - MER89-int LTR ERV1 -278 6523 6072 518 199 44 119 chrX 107076826 107077052 -55522878 - L1MC4a LINE L1 -1888 5920 5712 21 57 0 0 chrX 107077990 107078025 -55521905 + AT_rich Low_complexity Low_complexity 1 35 0 409 304 0 18 chrX 107078472 107078584 -55521346 + MIR3 SINE MIR 87 196 -12 29 0 0 0 chrX 107078896 107078925 -55521005 + AT_rich Low_complexity Low_complexity 1 29 0 600 290 72 21 chrX 107079169 107079545 -55520385 - L1MC5 LINE L1 -61 7900 7506 395 185 54 11 chrX 107079570 107079662 -55520268 - L1MC5 LINE L1 -519 7442 7347 261 245 0 0 chrX 107079707 107079760 -55520170 + L1ME3 LINE L1 6103 6155 -7 702 281 56 61 chrX 107079993 107080411 -55519519 - L1MC4 LINE L1 -857 6951 6669 2189 58 0 4 chrX 107080411 107080687 -55519243 - AluY SINE Alu -2 309 35 702 281 56 61 chrX 107080687 107080927 -55519003 - L1MC4 LINE L1 -1139 6669 6429 24 0 0 0 chrX 107080968 107080992 -55518938 + AT_rich Low_complexity Low_complexity 1 24 0 320 283 181 35 chrX 107081082 107081308 -55518622 - L1MC4a LINE L1 -1484 6324 6066 1039 213 52 109 chrX 107081336 107081428 -55518502 - L1MC4a LINE L1 -1985 5823 5727 2386 98 22 30 chrX 107081428 107081795 -55518135 - THE1B LTR MaLR 0 364 1 1039 213 52 109 chrX 107081795 107082105 -55517825 - L1MC4a LINE L1 -2081 5727 5444 2319 93 0 6 chrX 107083540 107083852 -55516078 - AluSg SINE Alu 0 310 1 28 0 0 0 chrX 107084029 107084057 -55515873 + AT_rich Low_complexity Low_complexity 1 28 0 191 62 62 0 chrX 107084185 107084217 -55515713 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 260 362 0 9 chrX 107085838 107085943 -55513987 + L2 LINE L2 2166 2269 -1045 970 306 133 52 chrX 107085944 107087225 -55512705 + L2 LINE L2 1931 3311 -2 300 313 55 0 chrX 107088505 107088633 -55511297 - L1ME1 LINE L1 -263 5903 5769 1601 204 0 3 chrX 107088656 107088961 -55510969 - AluJb SINE Alu 0 304 1 1881 112 61 4 chrX 107089446 107089723 -55510207 + AluSg SINE Alu 1 293 -17 22 0 0 0 chrX 107089901 107089923 -55510007 + AT_rich Low_complexity Low_complexity 1 22 0 2393 96 0 3 chrX 107090961 107091273 -55508657 + AluSp SINE Alu 1 311 -2 23 68 0 0 chrX 107091758 107091802 -55508128 + AT_rich Low_complexity Low_complexity 1 44 0 876 76 0 23 chrX 107092293 107092425 -55507505 + L1MA9 LINE L1 6184 6312 0 2309 88 0 3 chrX 107092553 107092850 -55507080 - AluSg SINE Alu -14 296 1 2167 165 19 38 chrX 107092869 107093342 -55506588 - L1MB8 LINE L1 -6 6172 5709 26 30 0 0 chrX 107093712 107093745 -55506185 + AT_rich Low_complexity Low_complexity 1 33 0 33 0 0 0 chrX 107093944 107093977 -55505953 + AT_rich Low_complexity Low_complexity 1 33 0 1947 129 26 0 chrX 107093978 107094289 -55505641 - L1PA16 LINE L1 -11 6155 5837 1089 78 0 26 chrX 107095071 107095224 -55504706 - L1MA1 LINE L1 -7 6295 6147 1765 219 79 13 chrX 107095264 107095730 -55504200 - L1ME1 LINE L1 -5 6161 5665 25 0 0 0 chrX 107096059 107096084 -55503846 + AT_rich Low_complexity Low_complexity 1 25 0 941 197 111 89 chrX 107096143 107096458 -55503472 - L1M4 LINE L1 -6036 506 185 235 163 23 0 chrX 107096459 107096502 -55503428 - L1M4 LINE L1 -6314 228 185 925 176 52 73 chrX 107096503 107096736 -55503194 - L1M4 LINE L1 -6314 228 1 198 0 0 0 chrX 107097946 107097968 -55501962 + (A)n Simple_repeat Simple_repeat 1 22 0 246 281 124 33 chrX 107098049 107098170 -55501760 - MIR3 SINE MIR 0 208 77 28 29 0 0 chrX 107099576 107099611 -55500319 + AT_rich Low_complexity Low_complexity 1 35 0 5271 125 22 11 chrX 107100850 107101707 -55498223 - L1MA4 LINE L1 0 6300 5434 188 262 24 0 chrX 107102070 107102112 -55497818 + L2 LINE L2 3252 3294 -19 457 297 44 33 chrX 107102305 107102683 -55497247 + L1MEd LINE L1 1093 1561 -1015 364 309 73 26 chrX 107103247 107103519 -55496411 + L1MEd LINE L1 2179 2463 -3933 1612 152 32 23 chrX 107103532 107104014 -55495916 + L1P4 LINE L1 5017 5506 -660 419 293 132 23 chrX 107103999 107104613 -55495317 + L1M4 LINE L1 4173 4853 -1293 * 2110 251 278 27 chrX 107105585 107106626 -55493304 + L2 LINE L2 761 2062 -1252 186 43 0 0 chrX 107106636 107106659 -55493271 + (TG)n Simple_repeat Simple_repeat 2 24 0 1596 243 104 12 chrX 107106659 107107180 -55492750 - L1ME3 LINE L1 -80 6082 5505 1390 270 30 5 chrX 107107268 107107705 -55492225 - L1ME3 LINE L1 -967 5179 4732 2275 294 121 29 chrX 107107745 107108743 -55491187 + L2 LINE L2 2097 3179 -134 1739 151 0 14 chrX 107108743 107109027 -55490903 - AluJo SINE Alu -24 288 9 2275 294 121 29 chrX 107109027 107109137 -55490793 + L2 LINE L2 3179 3278 -35 335 235 37 12 chrX 107109155 107109236 -55490694 + L2 LINE L2 3218 3300 -13 899 207 39 0 chrX 107110197 107110376 -55489554 - MER5A DNA MER1_type -3 186 1 249 57 0 0 chrX 107110832 107110867 -55489063 + (TG)n Simple_repeat Simple_repeat 2 36 0 240 265 0 0 chrX 107111189 107111238 -55488692 + polypyrimidine Low_complexity Low_complexity 2 50 0 2344 61 0 0 chrX 107111783 107112062 -55487868 + AluSq SINE Alu 3 281 -32 230 0 0 32 chrX 107112064 107112095 -55487835 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 506 195 110 17 chrX 107112296 107112414 -55487516 + L2 LINE L2 3185 3313 0 1495 262 68 44 chrX 107112964 107113316 -55486614 - L1ME3A LINE L1 -38 6132 5790 219 114 0 0 chrX 107113316 107113351 -55486579 + (TG)n Simple_repeat Simple_repeat 2 36 0 1495 262 68 44 chrX 107113351 107113441 -55486489 - L1ME3A LINE L1 -380 5790 5704 216 67 0 0 chrX 107113441 107113471 -55486459 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 1495 262 68 44 chrX 107113471 107113513 -55486417 - L1ME3A LINE L1 -466 5704 5664 1003 193 45 40 chrX 107113513 107113736 -55486194 + MER58A DNA MER1_type 1 224 0 1495 262 68 44 chrX 107113736 107114276 -55485654 - L1ME3A LINE L1 -506 5664 5083 2708 195 24 16 chrX 107114461 107114496 -55485434 - MLT2B2 LTR ERVL -8 507 474 479 59 0 15 chrX 107114496 107114564 -55485366 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2708 195 24 16 chrX 107114564 107115031 -55484899 - MLT2B2 LTR ERVL -41 474 1 2032 113 10 13 chrX 107115401 107115702 -55484228 - AluSx SINE Alu -12 300 1 341 330 35 9 chrX 107116086 107116201 -55483729 + L2 LINE L2 3196 3313 0 180 0 0 0 chrX 107117130 107117150 -55482780 + (A)n Simple_repeat Simple_repeat 1 20 0 15687 118 18 2 chrX 107117200 107119581 -55480349 - Tigger1 DNA MER2_type 0 2418 1 630 245 56 33 chrX 107120030 107120332 -55479598 - L1MC5 LINE L1 -44 7917 7609 2068 102 57 0 chrX 107120957 107121240 -55478690 + AluSx SINE Alu 1 299 -13 1311 246 114 46 chrX 107121268 107121375 -55478555 - L1MC4a LINE L1 -1709 6099 6001 1995 95 0 0 chrX 107121375 107121627 -55478303 - AluSg SINE Alu -31 279 28 1311 246 114 46 chrX 107121627 107122153 -55477777 - L1MC4a LINE L1 -1807 6001 5423 22 0 0 0 chrX 107122267 107122289 -55477641 + AT_rich Low_complexity Low_complexity 1 22 0 2458 226 106 38 chrX 107122532 107123891 -55476039 - L1ME2 LINE L1 -11 6153 4657 411 225 58 0 chrX 107123893 107124013 -55475917 - L1MC4a LINE L1 -2369 5439 5313 6632 213 63 34 chrX 107125388 107127056 -55472874 + L1ME1 LINE L1 3347 5143 -1023 829 208 107 15 chrX 107127056 107127253 -55472677 - MER58C DNA MER1_type 0 215 1 6632 213 63 34 chrX 107127253 107128288 -55471642 + L1ME1 LINE L1 5143 6146 -20 21 71 0 0 chrX 107129649 107129691 -55470239 + AT_rich Low_complexity Low_complexity 1 42 0 2185 98 20 0 chrX 107130111 107130408 -55469522 - AluSq SINE Alu -10 303 1 199 113 38 0 chrX 107130705 107130758 -55469172 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 0 0 0 chrX 107132273 107132300 -55467630 + AT_rich Low_complexity Low_complexity 1 27 0 202 253 165 0 chrX 107133245 107133324 -55466606 - MIR SINE MIR -112 150 59 1091 194 128 7 chrX 107133648 107133937 -55465993 + MER5C DNA MER1_type 1 324 0 437 263 87 77 chrX 107134480 107134866 -55465064 - MLT1G1 LTR MaLR -1 594 159 1805 148 0 39 chrX 107134874 107135337 -55464593 - AluJo SINE Alu 0 451 1 306 267 51 23 chrX 107135337 107135497 -55464433 - MLT1F LTR MaLR -383 159 3 2223 97 0 10 chrX 107136001 107136300 -55463630 - AluY SINE Alu -12 299 4 220 284 9 95 chrX 107137780 107137896 -55462034 - MIR3 SINE MIR -5 203 98 525 354 36 25 chrX 107138538 107138812 -55461118 - L3b LINE CR1 -28 1555 1279 21 36 0 0 chrX 107139346 107139374 -55460556 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chrX 107140925 107140965 -55458965 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrX 107141103 107141132 -55458798 + AT_rich Low_complexity Low_complexity 1 29 0 241 219 34 10 chrX 107141412 107141497 -55458433 - L1ME LINE L1 -485 5679 5592 358 245 34 34 chrX 107141709 107141856 -55458074 + MER104 DNA Tc2 3 149 -31 639 326 66 37 chrX 107141898 107142413 -55457517 - L1MC4a LINE L1 -1898 5910 5381 347 229 41 58 chrX 107142415 107142597 -55457333 - L1M4 LINE L1 -789 5357 5167 1842 259 105 17 chrX 107142650 107143512 -55456418 - L2 LINE L2 0 3313 2358 8258 57 4 0 chrX 107143517 107145361 -55454569 - L1PA6 LINE L1 0 6154 4320 12638 58 4 2 chrX 107145361 107147012 -55452918 + L1PA6 LINE L1 2646 4299 -1847 238 291 58 0 chrX 107147018 107147104 -55452826 - L2 LINE L2 -1887 1427 1337 373 297 24 12 chrX 107147195 107147360 -55452570 - L1M4 LINE L1 -1099 5047 4881 4862 179 26 13 chrX 107147770 107148769 -55451161 + Tigger6a DNA MER2_type 32 1081 -2 380 301 91 16 chrX 107148966 107149152 -55450778 + MIR SINE MIR 3 202 -60 230 316 13 0 chrX 107149223 107149302 -55450628 + MIR3 SINE MIR 125 204 -4 2166 202 71 55 chrX 107149383 107149690 -55450240 + L1MB8 LINE L1 4575 4876 -1270 1494 186 28 16 chrX 107149690 107150012 -55449918 + L1PA16 LINE L1 5838 6163 -3 2166 202 71 55 chrX 107150012 107150529 -55449401 + L1MB8 LINE L1 4876 5346 -800 * 9750 210 28 55 chrX 107150513 107150812 -55449118 + L1MA9 LINE L1 2633 2939 -3373 1874 154 38 0 chrX 107150812 107151105 -55448825 - AluSx SINE Alu -7 305 2 9750 210 28 55 chrX 107151105 107151726 -55448204 + L1MA9 LINE L1 2939 3575 -2737 700 129 57 32 chrX 107151726 107151850 -55448080 - AluJb SINE Alu -15 297 171 9750 210 28 55 chrX 107151850 107154481 -55445449 + L1MA9 LINE L1 3575 6211 -101 695 169 7 7 chrX 107154483 107154631 -55445299 + L1MB3 LINE L1 6020 6167 -16 567 148 37 0 chrX 107154654 107154762 -55445168 + L1MA7 LINE L1 6180 6291 0 2264 179 64 0 chrX 107154774 107155210 -55444720 + L1MB8 LINE L1 5317 5780 -398 3670 224 60 8 chrX 107155246 107156235 -55443695 + L1PB1 LINE L1 6 1045 -5818 14096 193 26 38 chrX 107156239 107158490 -55441440 + L1PB1 LINE L1 1093 3371 -3496 2156 116 0 22 chrX 107158490 107158809 -55441121 + AluSx SINE Alu 1 312 0 14096 193 26 38 chrX 107158809 107159460 -55440470 + L1PB1 LINE L1 3371 4029 -2838 15459 26 1 0 chrX 107159460 107162053 -55437877 - L1PA4 LINE L1 -8 6147 3553 14096 193 26 38 chrX 107162053 107163023 -55436907 + L1PB1 LINE L1 4029 5010 -1857 234 0 0 0 chrX 107163023 107163049 -55436881 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 14096 193 26 38 chrX 107163049 107164812 -55435118 + L1PB1 LINE L1 5010 6867 0 2027 163 12 12 chrX 107164829 107165229 -55434701 + L1MB8 LINE L1 5773 6172 -6 1608 129 61 23 chrX 107165821 107166131 -55433799 + L1MA10 LINE L1 6012 6333 -1 21 36 0 0 chrX 107167033 107167061 -55432869 + AT_rich Low_complexity Low_complexity 1 28 0 573 147 9 28 chrX 107167150 107167259 -55432671 - Tigger7 DNA MER2_type 0 2487 2381 * 1205 232 68 0 chrX 107167254 107167504 -55432426 - Tigger7 DNA MER2_type -466 267 1 1539 160 4 11 chrX 107168319 107168587 -55431343 - AluJo SINE Alu -14 298 33 411 283 246 26 chrX 107168731 107168922 -55431008 + MIR SINE MIR 2 234 -28 732 246 89 0 chrX 107168951 107169142 -55430788 + MIR SINE MIR 51 258 -4 7609 273 55 16 chrX 107169892 107174687 -55425243 - L1ME3 LINE L1 -2 6229 1289 1598 143 30 158 chrX 107174687 107175085 -55424845 + MER7A DNA MER2_type 2 346 0 495 293 121 31 chrX 107175085 107175638 -55424292 - L1ME3 LINE L1 -5105 1291 689 22 70 0 0 chrX 107175755 107175798 -55424132 + AT_rich Low_complexity Low_complexity 1 43 0 1868 56 0 24 chrX 107175799 107176050 -55423880 - L1PA4 LINE L1 -4 6151 5907 1166 35 7 0 chrX 107176050 107176191 -55423739 + L1PA4 LINE L1 5782 5923 -232 268 337 11 0 chrX 107176184 107176273 -55423657 - L1MEc LINE L1 -4678 1718 1629 * 241 163 0 41 chrX 107176287 107176336 -55423594 + MLT1E3 LTR MaLR 3 49 -575 3567 71 10 4 chrX 107176352 107176844 -55423086 + L1P LINE L1 4258 4752 -1394 729 179 21 10 chrX 107176846 107177009 -55422921 + MLT1E LTR MaLR 390 593 0 259 340 33 7 chrX 107177030 107177180 -55422750 - L1MEc LINE L1 -5913 292 139 * 838 249 24 14 chrX 107177176 107177315 -55422615 + L1ME LINE L1 4408 4544 -1602 2148 89 6 16 chrX 107177315 107177628 -55422302 + L1PA10 LINE L1 5858 6167 -1 838 249 24 14 chrX 107177628 107177777 -55422153 + L1ME LINE L1 4544 4699 -1447 2215 102 0 0 chrX 107177777 107178071 -55421859 + AluSg SINE Alu 1 294 -16 1959 236 46 15 chrX 107178072 107179040 -55420890 + L1ME LINE L1 4768 5769 -395 352 221 21 11 chrX 107179038 107179133 -55420797 + L1ME LINE L1 5711 5806 -356 * 22 35 0 0 chrX 107179210 107179239 -55420691 + AT_rich Low_complexity Low_complexity 1 29 0 1887 147 14 3 chrX 107179641 107179933 -55419997 + AluSx SINE Alu 1 295 -17 189 0 0 0 chrX 107180974 107180995 -55418935 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1867 129 0 0 chrX 107184632 107184895 -55415035 + AluSx SINE Alu 1 263 -49 26 0 0 0 chrX 107185212 107185238 -55414692 + AT_rich Low_complexity Low_complexity 1 26 0 269 100 0 0 chrX 107185316 107185356 -55414574 - MIR3 SINE MIR -3 205 166 2118 170 43 19 chrX 107185386 107185803 -55414127 - MER31B LTR ERV1 -39 427 1 434 266 0 0 chrX 107185803 107185897 -55414033 - MIR SINE MIR -72 136 43 218 273 136 34 chrX 107186955 107187043 -55412887 + L2 LINE L2 3154 3250 -22 * 514 308 64 48 chrX 107187010 107187251 -55412679 - MIR SINE MIR -21 241 2 275 0 29 0 chrX 107187597 107187632 -55412298 + (TAA)n Simple_repeat Simple_repeat 3 38 0 2102 107 0 0 chrX 107187632 107187912 -55412018 + AluSx SINE Alu 1 280 -32 190 27 0 81 chrX 107187914 107187951 -55411979 + (TAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chrX 107188650 107188671 -55411259 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chrX 107189649 107189687 -55410243 + AT_rich Low_complexity Low_complexity 1 38 0 959 239 29 21 chrX 107189697 107189935 -55409995 - MIR SINE MIR -21 241 2 691 159 19 164 chrX 107190709 107190825 -55409105 + MER5A DNA MER1_type 1 74 -115 738 86 57 0 chrX 107190825 107190930 -55409000 - HY1 scRNA scRNA -1 111 1 691 159 19 164 chrX 107190930 107191027 -55408903 + MER5A DNA MER1_type 74 183 -6 24 32 0 0 chrX 107191127 107191158 -55408772 + AT_rich Low_complexity Low_complexity 1 31 0 319 261 63 18 chrX 107192285 107192396 -55407534 - L1MC4 LINE L1 -121 7921 7806 641 148 9 9 chrX 107192468 107192576 -55407354 + FLAM_C SINE Alu 13 120 -23 2462 259 55 24 chrX 107192586 107193492 -55406438 - L1MC4 LINE L1 -237 7805 6872 562 194 0 0 chrX 107193590 107193698 -55406232 + FLAM_A SINE Alu 35 142 0 1857 194 138 31 chrX 107193797 107194282 -55405648 - MER101B LTR ERV1 -33 537 1 650 318 5 5 chrX 107194282 107194483 -55405447 - MIR SINE MIR -59 203 3 9295 81 5 3 chrX 107195779 107197814 -55402116 - L1PA7 LINE L1 -1 6153 4103 9024 88 10 0 chrX 107197814 107199100 -55400830 + L1PA7 LINE L1 2816 4114 -2032 23 0 0 0 chrX 107201725 107201748 -55398182 + AT_rich Low_complexity Low_complexity 1 23 0 2216 90 0 3 chrX 107202289 107202606 -55397324 - AluSg SINE Alu 0 317 2 244 360 0 0 chrX 107202917 107203003 -55396927 + CT-rich Low_complexity Low_complexity 2 87 0 30 27 0 0 chrX 107203085 107203122 -55396808 + AT_rich Low_complexity Low_complexity 1 37 0 204 260 123 68 chrX 107203960 107204106 -55395824 - MIR SINE MIR -44 218 65 516 300 102 27 chrX 107204343 107204636 -55395294 + Charlie2 DNA MER1_type 1 315 -2467 2864 138 19 6 chrX 107204645 107205165 -55394765 + L1MA4A LINE L1 5599 6125 -178 427 169 22 0 chrX 107205167 107205256 -55394674 + L1MA4A LINE L1 6190 6280 -23 1122 211 121 5 chrX 107205324 107205761 -55394169 + Charlie2 DNA MER1_type 2245 2732 -130 515 129 52 69 chrX 107205764 107205880 -55394050 - LTR50 LTR ERVL -681 114 1 239 276 77 32 chrX 107206342 107206498 -55393432 - MER104 DNA Tc2 -17 163 1 204 351 206 17 chrX 107207275 107207682 -55392248 - L2 LINE L2 -428 2886 2403 285 29 0 0 chrX 107207913 107207947 -55391983 + (TG)n Simple_repeat Simple_repeat 2 35 0 200 316 77 26 chrX 107209539 107209656 -55390274 - MIR3 SINE MIR -75 133 11 24 32 0 0 chrX 107211290 107211321 -55388609 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 107211782 107211803 -55388127 + AT_rich Low_complexity Low_complexity 1 21 0 2006 104 10 10 chrX 107212208 107212535 -55387395 - AluSx SINE Alu 0 312 5 235 47 0 47 chrX 107212739 107212782 -55387148 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 420 20 0 0 chrX 107212998 107213047 -55386883 + (TG)n Simple_repeat Simple_repeat 2 50 0 229 275 29 0 chrX 107213108 107213177 -55386753 + (TA)n Simple_repeat Simple_repeat 1 71 0 1664 83 9 0 chrX 107213637 107213855 -55386075 - AluSp SINE Alu -4 309 90 587 165 204 17 chrX 107214284 107214460 -55385470 - MER6B DNA MER2_type -1 209 1 494 315 73 52 chrX 107214755 107215177 -55384753 + LTR33 LTR ERVL 90 520 -1 290 229 30 76 chrX 107216147 107216278 -55383652 - MIR SINE MIR -66 196 72 1901 228 77 7 chrX 107217331 107218067 -55381863 - L1MEc LINE L1 -3631 2584 1849 1536 176 53 15 chrX 107218063 107218403 -55381527 - L1MB7 LINE L1 -16 6168 5816 * 6868 182 39 37 chrX 107218404 107219165 -55380765 - L1MB5 LINE L1 0 6174 5416 1646 154 21 25 chrX 107219165 107219450 -55380480 - AluJo SINE Alu -22 290 7 6868 182 39 37 chrX 107219450 107220094 -55379836 - L1MB5 LINE L1 -758 5416 4775 1483 206 32 0 chrX 107220094 107220376 -55379554 - AluJo SINE Alu -21 291 1 6868 182 39 37 chrX 107220376 107221620 -55378310 - L1MB5 LINE L1 -1399 4775 3519 4113 236 59 53 chrX 107221620 107222068 -55377862 - L1MEc LINE L1 -2367 4277 3833 1562 197 13 3 chrX 107222068 107222377 -55377553 - AluJo SINE Alu 0 312 1 4113 236 59 53 chrX 107222377 107223456 -55376474 - L1MEc LINE L1 -2811 3833 2752 2081 103 35 0 chrX 107223456 107223746 -55376184 - AluSx SINE Alu -9 303 4 4113 236 59 53 chrX 107223746 107224642 -55375288 - L1MEc LINE L1 -3892 2752 1863 22 0 0 0 chrX 107224644 107224666 -55375264 + AT_rich Low_complexity Low_complexity 1 22 0 4495 165 8 1 chrX 107224667 107225499 -55374431 - L1MB3 LINE L1 -2 6181 5344 6675 208 15 45 chrX 107225510 107227264 -55372666 - L1MEc LINE L1 -4833 1709 8 3375 237 108 63 chrX 107227282 107227432 -55372498 - L1MEc LINE L1 -4548 1848 1706 4638 109 20 54 chrX 107227432 107228263 -55371667 - L1MA1 LINE L1 -7 6295 5493 3375 237 108 63 chrX 107228263 107229121 -55370809 - L1MEc LINE L1 -4690 1706 888 2343 102 0 0 chrX 107229121 107229434 -55370496 - AluSq SINE Alu 0 313 1 3375 237 108 63 chrX 107229434 107229826 -55370104 - L1MEc LINE L1 -5508 888 515 270 0 0 0 chrX 107229826 107229856 -55370074 + (TG)n Simple_repeat Simple_repeat 1 30 0 3375 237 108 63 chrX 107229856 107230189 -55369741 - L1MEc LINE L1 -5881 515 34 207 167 0 0 chrX 107232547 107232589 -55367341 + (TA)n Simple_repeat Simple_repeat 1 42 0 2528 72 3 0 chrX 107233137 107233443 -55366487 + AluSp SINE Alu 1 307 -6 189 74 0 0 chrX 107233870 107233897 -55366033 + (TA)n Simple_repeat Simple_repeat 1 27 0 262 321 9 9 chrX 107234946 107235055 -55364875 + (CA)n Simple_repeat Simple_repeat 2 110 0 228 35 0 0 chrX 107236468 107236497 -55363433 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 455 174 0 71 chrX 107237236 107237334 -55362596 - FRAM SINE Alu -23 153 63 761 142 0 0 chrX 107237470 107237583 -55362347 + AluJb SINE Alu 2 114 -198 379 96 0 0 chrX 107237583 107237635 -55362295 + Alu SINE Alu 238 289 -13 305 227 113 10 chrX 107242343 107242440 -55357490 + MIR SINE MIR 22 128 -134 23 54 0 0 chrX 107243458 107243495 -55356435 + AT_rich Low_complexity Low_complexity 1 37 0 286 191 63 0 chrX 107243829 107243892 -55356038 - MIR SINE MIR -3 259 193 300 70 0 0 chrX 107244159 107244202 -55355728 + (CCA)n Simple_repeat Simple_repeat 2 44 0 243 61 0 0 chrX 107244902 107244935 -55354995 + (TG)n Simple_repeat Simple_repeat 2 34 0 384 77 0 0 chrX 107251816 107251868 -55348062 + (TCTCCC)n Simple_repeat Simple_repeat 3 54 0 497 306 78 4 chrX 107252708 107252989 -55346941 - L1ME4a LINE L1 -217 5904 5603 2251 110 0 0 chrX 107253108 107253408 -55346522 - AluSg SINE Alu -10 300 1 266 366 94 5 chrX 107255927 107256140 -55343790 + L2 LINE L2 2525 2756 -558 272 236 24 8 chrX 107256943 107257070 -55342860 + GA-rich Low_complexity Low_complexity 3 131 0 467 264 84 39 chrX 107257456 107257634 -55342296 + L2 LINE L2 3128 3313 0 223 285 138 49 chrX 107258139 107258262 -55341668 + L2 LINE L2 3137 3270 -2 2806 16 0 0 chrX 107258662 107258970 -55340960 - AluY SINE Alu -3 308 1 305 320 33 25 chrX 107259117 107259239 -55340691 + L1ME3A LINE L1 6046 6168 -2 510 293 75 7 chrX 107260666 107260813 -55339117 + MIR3 SINE MIR 20 176 -32 1284 278 94 30 chrX 107260986 107261799 -55338131 - L2 LINE L2 0 3313 2438 2818 181 11 24 chrX 107261921 107262299 -55337631 + MER44D DNA MER2_type 2 427 -2060 2399 84 0 0 chrX 107262299 107262597 -55337333 - AluSq SINE Alu -15 298 1 2818 181 11 24 chrX 107262597 107262770 -55337160 + MER44D DNA MER2_type 427 601 -4 36 0 0 0 chrX 107263076 107263112 -55336818 + AT_rich Low_complexity Low_complexity 1 36 0 1137 246 107 40 chrX 107263812 107264344 -55335586 - HAL1 LINE L1 -28 2479 1912 330 206 129 26 chrX 107264375 107264530 -55335400 - HAL1 LINE L1 -1402 1105 935 1372 256 37 2 chrX 107265288 107265690 -55334240 + L1M4 LINE L1 4386 4801 -1345 217 295 0 26 chrX 107365725 107365762 -55234168 + A-rich Low_complexity Low_complexity 1 37 -39 2146 138 3 3 chrX 107365762 107366073 -55233857 + AluJb SINE Alu 1 311 -1 217 295 0 26 chrX 107366073 107366113 -55233817 + A-rich Low_complexity Low_complexity 37 76 0 2590 281 76 81 chrX 107367229 107368488 -55231442 + L1M4 LINE L1 2454 3702 -2444 2466 90 0 6 chrX 107368488 107368800 -55231130 - AluSx SINE Alu -2 310 1 2590 281 76 81 chrX 107368800 107369470 -55230460 + L1M4 LINE L1 3702 4374 -1772 708 240 235 0 chrX 107369504 107369704 -55230226 + MIR SINE MIR 15 261 -1 710 313 27 0 chrX 107370178 107370402 -55229528 - MIR SINE MIR -5 257 28 252 0 0 0 chrX 107371256 107371284 -55228646 + (CA)n Simple_repeat Simple_repeat 2 29 0 1566 193 40 3 chrX 107371702 107372003 -55227927 + AluJo SINE Alu 1 312 0 411 253 11 0 chrX 107372219 107372306 -55227624 - MIR3 SINE MIR -25 183 96 584 204 1 22 chrX 107372500 107372676 -55227254 + MIR SINE MIR 37 255 -7 2485 102 14 11 chrX 107373399 107373770 -55226160 + L1MB3 LINE L1 5810 6181 -2 10140 35 11 0 chrX 107374166 107374642 -55225288 - L1PA6 LINE L1 0 6154 5685 2477 73 0 13 chrX 107374642 107374955 -55224975 - AluY SINE Alu -2 309 1 10140 35 11 0 chrX 107374955 107376423 -55223507 - L1PA6 LINE L1 -469 5685 4210 186 43 0 0 chrX 107377260 107377283 -55222647 + (GGAAA)n Simple_repeat Simple_repeat 5 27 0 359 75 38 0 chrX 107377540 107377593 -55222337 - Alu SINE Alu -4 298 244 780 148 0 0 chrX 107378959 107379067 -55220863 + FLAM_A SINE Alu 10 117 -25 440 281 76 38 chrX 107379723 107379961 -55219969 - MIR SINE MIR -10 252 6 180 0 0 0 chrX 107380183 107380203 -55219727 + (CAA)n Simple_repeat Simple_repeat 2 21 0 779 126 6 119 chrX 107380476 107380635 -55219295 + FLAM_C SINE Alu 2 142 -1 335 258 67 0 chrX 107380641 107380730 -55219200 - MIR3 SINE MIR -23 185 91 237 237 0 0 chrX 107381288 107381347 -55218583 + (TA)n Simple_repeat Simple_repeat 2 60 0 422 266 74 76 chrX 107382105 107382371 -55217559 - L1ME LINE L1 -458 5663 5398 1020 165 30 15 chrX 107383040 107383240 -55216690 + MER3 DNA MER1_type 7 209 0 2845 3 0 3 chrX 107384249 107384555 -55215375 - AluYa5 SINE Alu -6 305 1 381 169 0 0 chrX 107384806 107384889 -55215041 + (CACCT)n Simple_repeat Simple_repeat 3 85 0 866 239 69 20 chrX 107385121 107385368 -55214562 + MIR SINE MIR 4 262 0 5088 148 37 32 chrX 107387924 107388076 -55211854 - L1MB4 LINE L1 -13 6167 6017 513 129 35 0 chrX 107388076 107388161 -55211769 - L1MB7 LINE L1 0 6184 6097 5088 148 37 32 chrX 107388161 107389071 -55210859 - L1MB4 LINE L1 -163 6017 5270 540 184 286 48 chrX 107389155 107389323 -55210607 + MER63A DNA MER1_type 1 208 -2 195 290 32 0 chrX 107389559 107389621 -55210309 - MIR SINE MIR -129 79 16 325 280 57 19 chrX 107389825 107389982 -55209948 - L1ME4a LINE L1 -3 6118 5956 1514 164 31 65 chrX 107390592 107390915 -55209015 - AluJo SINE Alu 0 312 1 311 297 44 11 chrX 107393008 107393099 -55206831 + MER5A DNA MER1_type 7 100 -89 370 229 0 121 chrX 107393101 107393241 -55206689 + MER5A DNA MER1_type 61 183 -6 224 395 0 26 chrX 107394155 107394307 -55205623 + L2 LINE L2 2766 2913 -401 589 280 29 62 chrX 107394420 107394663 -55205267 + L2 LINE L2 3077 3311 -2 307 248 110 55 chrX 107394682 107394791 -55205139 - MIR SINE MIR -61 147 33 2057 169 18 35 chrX 107395471 107395814 -55204116 - MER1B DNA MER1_type 0 337 1 531 283 11 59 chrX 107397372 107397559 -55202371 + MER5B DNA MER1_type 1 178 0 309 51 0 0 chrX 107397750 107397789 -55202141 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 272 256 107 30 chrX 107398041 107398209 -55201721 - L1ME4a LINE L1 -3 6118 5938 521 286 45 25 chrX 107398696 107398895 -55201035 - L2 LINE L2 0 3313 3111 2346 85 0 10 chrX 107398910 107399215 -55200715 - AluSc SINE Alu -7 302 1 220 295 98 0 chrX 107399469 107399530 -55200400 + L2 LINE L2 3150 3216 -56 241 289 48 19 chrX 107399563 107399667 -55200263 - MIR SINE MIR -49 213 107 927 264 8 29 chrX 107400210 107400456 -55199474 + MIR SINE MIR 7 247 -15 685 109 117 23 chrX 107401483 107401611 -55198319 + MER91C DNA MER1_type 1 140 0 190 167 0 24 chrX 107401792 107401834 -55198096 - L2 LINE L2 -1 3312 3272 4367 166 51 33 chrX 107402168 107403072 -55196858 - L1MB8 LINE L1 0 6178 5263 4565 183 77 6 chrX 107403075 107403173 -55196757 - L1MA9 LINE L1 -40 6336 6246 183 80 0 0 chrX 107403173 107403198 -55196732 + (TG)n Simple_repeat Simple_repeat 2 26 0 4565 183 77 6 chrX 107403198 107404395 -55195535 - L1MA9 LINE L1 -130 6246 4936 2970 193 60 20 chrX 107404406 107404746 -55195184 - L1MA9 LINE L1 -817 5393 5068 189 0 0 0 chrX 107404746 107404767 -55195163 + (TCCCC)n Simple_repeat Simple_repeat 5 25 0 1936 119 0 76 chrX 107404767 107405095 -55194835 - AluSx SINE Alu -9 303 1 2970 193 60 20 chrX 107405095 107405711 -55194219 - L1MA9 LINE L1 -1141 5069 1153 284 276 77 98 chrX 107405721 107405796 -55194134 - L2 LINE L2 -575 2739 2664 1504 116 70 0 chrX 107405796 107406011 -55193919 - MER30 DNA MER1_type 0 230 1 284 276 77 98 chrX 107406011 107406145 -55193785 - L2 LINE L2 -650 2664 2535 1907 168 3 16 chrX 107406145 107406460 -55193470 + AluJo SINE Alu 1 311 -1 284 276 77 98 chrX 107406460 107406546 -55193384 - L2 LINE L2 -779 2535 2449 2218 166 21 16 chrX 107406580 107407003 -55192927 - L1MD3 LINE L1 -1 7994 7570 409 270 88 14 chrX 107407036 107407184 -55192746 - MIR SINE MIR -3 259 101 692 253 58 39 chrX 107407346 107407603 -55192327 - MIR SINE MIR 0 262 1 225 354 90 0 chrX 107407952 107408096 -55191834 - L2 LINE L2 -187 3085 2929 551 287 77 44 chrX 107408107 107408749 -55191181 + L1MC/D LINE L1 5000 5663 -458 241 276 23 0 chrX 107408772 107408859 -55191071 + L1MC/D LINE L1 5736 5824 -1984 343 284 177 13 chrX 107408933 107409165 -55190765 - L2 LINE L2 -481 2833 2564 218 184 209 44 chrX 107410134 107410264 -55189666 + MIR SINE MIR 16 170 -92 1906 130 12 62 chrX 107410861 107411184 -55188746 + AluJo SINE Alu 1 307 -5 1555 213 36 9 chrX 107411807 107412136 -55187794 - MER46C DNA MER2_type 0 338 1 212 274 0 0 chrX 107413365 107413416 -55186514 - MIR SINE MIR -109 99 49 213 381 36 0 chrX 107414506 107414590 -55185340 + MIR SINE MIR 58 144 -118 242 369 91 45 chrX 107414721 107415008 -55184922 - L3 LINE CR1 -376 1201 902 184 30 61 0 chrX 107415251 107415284 -55184646 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2323 84 3 0 chrX 107415519 107415815 -55184115 + AluY SINE Alu 1 297 -14 440 313 50 0 chrX 107416259 107416438 -55183492 - MER5A DNA MER1_type 0 189 2 355 298 43 11 chrX 107416871 107416965 -55182965 - L2 LINE L2 -3 3269 3173 183 42 0 0 chrX 107416977 107417001 -55182929 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 263 332 43 86 chrX 107417001 107417188 -55182742 - L2 LINE L2 -78 3194 3016 396 163 153 20 chrX 107417192 107417290 -55182640 + L2 LINE L2 3196 3306 -7 228 324 14 0 chrX 107417285 107417359 -55182571 - L2 LINE L2 -266 3006 2932 * 553 282 52 6 chrX 107417445 107417619 -55182311 - MER5A DNA MER1_type 0 189 8 562 250 235 0 chrX 107419453 107419657 -55180273 + MIR SINE MIR 3 254 -8 733 244 62 58 chrX 107419702 107419944 -55179986 + MIR SINE MIR 7 249 -13 222 37 0 0 chrX 107419948 107419975 -55179955 + (ATG)n Simple_repeat Simple_repeat 1 27 0 1830 123 0 0 chrX 107420431 107420684 -55179246 - AluSq SINE Alu -60 253 1 720 288 76 42 chrX 107420710 107420792 -55179138 + L1M4 LINE L1 3589 3667 -2479 1764 147 0 73 chrX 107420792 107421105 -55178825 - AluJo SINE Alu -22 290 1 720 288 76 42 chrX 107421105 107421400 -55178530 + L1M4 LINE L1 3667 3996 -2150 746 172 8 8 chrX 107421400 107421559 -55178371 + FLAM_C SINE Alu 1 133 0 720 288 76 42 chrX 107421559 107421771 -55178159 + L1M4 LINE L1 3996 4199 -1947 788 163 21 64 chrX 107421958 107422099 -55177831 - AluJb SINE Alu -176 136 2 1536 72 0 0 chrX 107422368 107422549 -55177381 - AluSc SINE Alu -11 298 118 21467 86 9 3 chrX 107422649 107425515 -55174415 - L1P LINE L1 -3255 2891 11 1645 127 123 8 chrX 107425714 107425974 -55173956 - AluSg1 SINE Alu -19 290 1 432 253 71 15 chrX 107426023 107426228 -55173702 + L1ME3A LINE L1 5720 5881 -286 338 304 8 8 chrX 107426621 107426746 -55173184 - L1ME1 LINE L1 -18 6148 6024 684 158 10 0 chrX 107426891 107426992 -55172938 - AluJ/FLAM SINE Alu -210 102 1 4931 166 8 5 chrX 107427000 107427529 -55172401 - L1PA16 LINE L1 -200 5966 5440 2050 144 0 0 chrX 107427529 107427834 -55172096 - AluSx SINE Alu -7 305 1 4931 166 8 5 chrX 107427834 107428963 -55170967 - L1PA16 LINE L1 -726 5440 4302 2270 116 0 0 chrX 107429429 107429731 -55170199 + AluSx SINE Alu 1 302 -10 205 311 235 17 chrX 107430272 107430391 -55169539 - MIR3 SINE MIR -60 148 4 514 252 60 13 chrX 107430507 107430543 -55169387 - MER5B DNA MER1_type 0 189 156 521 136 29 39 chrX 107430543 107430646 -55169284 + L1MA7 LINE L1 6190 6291 0 514 252 60 13 chrX 107430646 107430778 -55169152 - MER5B DNA MER1_type -33 156 1 606 254 26 26 chrX 107430786 107430975 -55168955 - MER5A DNA MER1_type 0 189 1 373 161 97 43 chrX 107431015 107431108 -55168822 + MER5A DNA MER1_type 9 106 -83 1450 189 3 58 chrX 107432120 107432255 -55167675 + AluJo SINE Alu 2 143 -169 1943 142 30 0 chrX 107432255 107432551 -55167379 + AluSc SINE Alu 1 305 -4 1450 189 3 58 chrX 107432551 107432727 -55167203 + AluJo SINE Alu 143 296 -16 480 153 41 20 chrX 107432756 107432854 -55167076 - MIR SINE MIR -15 247 148 1343 167 22 77 chrX 107432855 107433166 -55166764 - MLT1B LTR MaLR -96 294 1 185 178 22 0 chrX 107433214 107433259 -55166671 + CT-rich Low_complexity Low_complexity 3 48 0 22 0 0 0 chrX 107433714 107433736 -55166194 + AT_rich Low_complexity Low_complexity 1 22 0 292 355 50 33 chrX 107435818 107435939 -55163991 - L2 LINE L2 -13 3259 3137 1775 169 7 20 chrX 107436001 107436303 -55163627 + AluJo SINE Alu 1 298 -14 388 244 269 6 chrX 107436371 107436527 -55163403 - MIR SINE MIR -2 260 64 219 313 72 54 chrX 107436575 107436741 -55163189 - L2 LINE L2 -218 3054 2886 673 215 0 148 chrX 107436944 107437016 -55162914 + MIR SINE MIR 7 88 -174 608 38 13 0 chrX 107437016 107437095 -55162835 + (TG)n Simple_repeat Simple_repeat 1 80 0 673 215 0 148 chrX 107437095 107437259 -55162671 + MIR SINE MIR 88 208 -54 347 183 192 17 chrX 107437269 107437389 -55162541 - MIR SINE MIR -40 222 82 1424 97 14 5 chrX 107437573 107437780 -55162150 + L1MA4A LINE L1 6095 6303 0 2134 125 17 0 chrX 107438075 107438370 -55161560 - AluSx SINE Alu -12 300 1 309 253 100 67 chrX 107438560 107438710 -55161220 - MIR3 SINE MIR -48 160 6 883 144 0 0 chrX 107439469 107439594 -55160336 + FLAM_C SINE Alu 1 125 -8 544 270 172 9 chrX 107439718 107439933 -55159997 + MIR SINE MIR 5 254 -8 229 192 0 19 chrX 107440544 107440596 -55159334 + MER5B DNA MER1_type 1 51 -127 394 155 107 0 chrX 107440624 107440708 -55159222 - L1MA5 LINE L1 0 6300 6208 250 288 0 59 chrX 107440931 107441049 -55158881 + MER113 DNA MER1_type? 40 150 -371 796 337 122 23 chrX 107441256 107441814 -55158116 + L2 LINE L2 1860 2472 -842 330 346 5 129 chrX 107441821 107442231 -55157699 - L2 LINE L2 0 3272 2914 413 269 116 51 chrX 107442398 107442770 -55157160 - L1MC4a LINE L1 -1631 6177 5782 555 256 23 0 chrX 107442815 107442948 -55156982 - MIR SINE MIR -28 234 99 1585 259 56 85 chrX 107443020 107443416 -55156514 - L1MC4a LINE L1 -743 5403 4997 2165 95 0 7 chrX 107443416 107443723 -55156207 + AluSx SINE Alu 1 305 0 1585 259 56 85 chrX 107443723 107443964 -55155966 - L1MC4a LINE L1 -1149 4997 5166 2518 75 0 0 chrX 107443964 107444271 -55155659 - AluSc SINE Alu -2 307 1 1585 259 56 85 chrX 107444271 107444532 -55155398 - L1MC4a LINE L1 -979 5167 4900 194 308 0 0 chrX 107444536 107444588 -55155342 - L2 LINE L2 -592 2722 2671 359 336 140 19 chrX 107444588 107444909 -55155021 + L2 LINE L2 2502 2861 -453 308 230 230 37 chrX 107445073 107445208 -55154722 - MIR SINE MIR -94 168 8 556 202 0 0 chrX 107446380 107446479 -55153451 + MER5A DNA MER1_type 11 109 -80 526 281 0 8 chrX 107446563 107446691 -55153239 + L2 LINE L2 3178 3304 -9 283 172 31 47 chrX 107446693 107446757 -55153173 + MIR SINE MIR 85 147 -115 301 229 57 14 chrX 107446986 107447056 -55152874 - L2 LINE L2 0 3313 3241 2205 134 0 0 chrX 107447056 107447376 -55152554 + HUERS-P3 LTR ERV1 8599 8918 -1 3555 120 44 7 chrX 107447376 107447916 -55152014 + LTR9B LTR ERV1 1 560 -84 2440 254 53 23 chrX 107447932 107448611 -55151319 - L2 LINE L2 -55 3258 2601 832 156 8 0 chrX 107448611 107448739 -55151191 - FLAM_A SINE Alu -4 129 1 2440 254 53 23 chrX 107448739 107448940 -55150990 - L2 LINE L2 -712 2601 2346 1826 169 31 81 chrX 107448940 107449324 -55150606 - MLT1A1 LTR MaLR 0 365 1 2440 254 53 23 chrX 107449324 107449412 -55150518 - L2 LINE L2 -967 2346 2262 830 181 28 32 chrX 107450068 107450366 -55149564 + L1ME3 LINE L1 5830 6161 -1 1453 142 111 28 chrX 107450379 107450667 -55149263 + AluJb SINE Alu 1 312 0 508 270 117 36 chrX 107450730 107450926 -55149004 + MIR SINE MIR 2 213 -49 2389 78 14 3 chrX 107451027 107451323 -55148607 + AluSx SINE Alu 1 299 -13 336 242 63 21 chrX 107451326 107451421 -55148509 - MER5B DNA MER1_type -53 125 27 3855 119 0 31 chrX 107451423 107451967 -55147963 - MER1A DNA MER1_type 0 527 1 888 226 44 9 chrX 107452104 107452330 -55147600 - L1ME3 LINE L1 0 6162 5929 200 277 219 17 chrX 107452462 107452581 -55147349 + L2 LINE L2 3168 3310 -3 181 152 0 65 chrX 107452633 107452679 -55147251 - L3 LINE CR1 -692 885 843 595 162 49 18 chrX 107452867 107452998 -55146932 + MIR SINE MIR 20 153 -81 470 252 34 8 chrX 107453176 107453295 -55146635 - MIR3 SINE MIR -3 205 84 235 306 74 19 chrX 107453530 107453638 -55146292 - L2 LINE L2 -21 3292 3179 559 302 33 37 chrX 107453899 107454114 -55145816 - MIR SINE MIR 0 262 49 422 126 0 176 chrX 107454142 107454261 -55145669 + MER4D LTR ERV1 1 98 -774 2048 127 0 0 chrX 107454262 107454545 -55145385 + AluSx SINE Alu 1 283 -29 189 0 0 0 chrX 107454557 107454578 -55145352 + (T)n Simple_repeat Simple_repeat 1 21 0 614 130 89 95 chrX 107454578 107454705 -55145225 + L1MB4 LINE L1 6013 6140 -40 2091 132 10 0 chrX 107454705 107455000 -55144930 + AluSx SINE Alu 6 303 -9 614 130 89 95 chrX 107455000 107455041 -55144889 + L1MB4 LINE L1 6140 6180 0 5411 103 18 15 chrX 107455098 107455881 -55144049 + MER4D LTR ERV1 119 903 0 3982 119 63 13 chrX 107456240 107456845 -55143085 - MER41B LTR ERV1 0 635 1 4768 225 60 114 chrX 107457407 107459551 -55140379 + L2 LINE L2 229 2257 -1057 796 286 75 0 chrX 107459546 107459759 -55140171 + MIR SINE MIR 33 261 -1 * 239 337 125 47 chrX 107460125 107460723 -55139207 - L2 LINE L2 -15 3257 2326 205 353 102 21 chrX 107461003 107461238 -55138692 - L2 LINE L2 -1527 1787 1534 1086 228 137 52 chrX 107461899 107462403 -55137527 + L1MC4 LINE L1 7496 8042 0 22 35 0 0 chrX 107462409 107462438 -55137492 + AT_rich Low_complexity Low_complexity 1 29 0 767 221 10 53 chrX 107462498 107462706 -55137224 + L1ME4a LINE L1 5553 5751 -370 277 228 38 13 chrX 107463079 107463158 -55136772 + L1ME4a LINE L1 5965 6045 -76 2021 130 3 35 chrX 107463499 107463815 -55136115 - AluSx SINE Alu -6 306 1 2372 149 2 40 chrX 107464454 107464636 -55135294 + MLT1B LTR MaLR 3 190 -200 2240 119 0 0 chrX 107464636 107464939 -55134991 + AluSx SINE Alu 5 307 -5 2372 149 2 40 chrX 107464939 107465159 -55134771 + MLT1B LTR MaLR 190 390 0 520 213 74 8 chrX 107465172 107465294 -55134636 - MIR SINE MIR -27 235 106 510 294 35 13 chrX 107465295 107465523 -55134407 + L1ME3A LINE L1 5713 5945 -225 227 271 0 0 chrX 107465543 107465613 -55134317 + (TA)n Simple_repeat Simple_repeat 2 71 0 427 271 54 23 chrX 107465907 107466036 -55133894 - MIR SINE MIR -119 143 11 210 188 0 72 chrX 107467164 107467233 -55132697 + CT-rich Low_complexity Low_complexity 1 64 0 203 161 0 0 chrX 107467386 107467417 -55132513 + MER5A DNA MER1_type 113 143 -46 593 212 263 0 chrX 107467657 107467836 -55132094 - MIR SINE MIR -34 228 3 281 204 301 0 chrX 107468047 107468140 -55131790 - L2 LINE L2 0 3313 3193 611 254 117 31 chrX 107468449 107469727 -55130203 + L1MEd LINE L1 1 1257 -4862 2371 74 0 0 chrX 107470578 107470892 -55129038 - AluSp SINE Alu 0 314 1 486 0 0 0 chrX 107471258 107471312 -55128618 + (CA)n Simple_repeat Simple_repeat 1 54 0 370 221 136 43 chrX 107472902 107473042 -55126888 - MIR SINE MIR 0 262 110 688 164 61 146 chrX 107473109 107473439 -55126491 + L1MC5 LINE L1 7622 7923 -38 687 140 0 0 chrX 107473858 107474001 -55125929 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 1437 199 7 18 chrX 107474011 107474293 -55125637 - AluJo SINE Alu -33 279 1 785 171 8 0 chrX 107474298 107474427 -55125503 - FLAM_C SINE Alu -3 130 1 451 234 90 9 chrX 107474563 107474674 -55125256 + MIR SINE MIR 17 136 -72 3212 181 45 5 chrX 107474784 107475459 -55124471 + L1M4 LINE L1 4731 5420 -743 273 174 0 0 chrX 107475462 107475508 -55124422 + Tigger4(Zombi) DNA MER2_type 18 63 -2668 256 43 43 22 chrX 107475516 107475562 -55124368 + (TTTTA)n Simple_repeat Simple_repeat 1 47 0 418 329 27 0 chrX 107475915 107476064 -55123866 + MIR3 SINE MIR 56 208 0 189 0 0 0 chrX 107476674 107476695 -55123235 + (CA)n Simple_repeat Simple_repeat 2 22 0 525 240 23 51 chrX 107476749 107476924 -55123006 + MER5B DNA MER1_type 4 173 -5 243 61 0 0 chrX 107477356 107477389 -55122541 + (CA)n Simple_repeat Simple_repeat 2 34 0 232 307 153 27 chrX 107477902 107478202 -55121728 - L1MC4a LINE L1 -1860 5948 5611 328 183 0 33 chrX 107478584 107478644 -55121286 + MIR3 SINE MIR 112 169 -39 379 369 90 39 chrX 107478661 107478973 -55120957 - L2 LINE L2 -37 3235 2908 455 252 82 25 chrX 107479133 107479292 -55120638 + MER117 DNA MER1_type 30 197 0 287 299 52 116 chrX 107479302 107479706 -55120224 - L2 LINE L2 -557 2757 2380 216 309 0 43 chrX 107480014 107480108 -55119822 - MIR SINE MIR -44 218 129 * 732 185 12 227 chrX 107480107 107480315 -55119615 - MIR SINE MIR -1 261 148 198 71 0 0 chrX 107480315 107480343 -55119587 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 732 185 12 227 chrX 107480343 107480464 -55119466 - MIR SINE MIR -114 148 3 331 256 7 102 chrX 107480473 107480610 -55119320 - MIR3 SINE MIR -75 133 10 2478 81 3 0 chrX 107481026 107481335 -55118595 + AluSp SINE Alu 1 310 -3 803 175 0 6 chrX 107481335 107481495 -55118435 + GA-rich Low_complexity Low_complexity 1 159 0 716 218 73 50 chrX 107481655 107481834 -55118096 + MIR3 SINE MIR 19 201 -7 2000 159 0 0 chrX 107481938 107482234 -55117696 + AluJo SINE Alu 1 296 -16 234 311 48 0 chrX 107483249 107483352 -55116578 + L1P LINE L1 5276 5383 -768 433 296 39 65 chrX 107484619 107484849 -55115081 + MIR SINE MIR 15 238 -24 247 323 94 16 chrX 107484889 107485016 -55114914 + MIR SINE MIR 56 192 -70 1489 247 9 29 chrX 107485122 107485180 -55114750 + L1MD1 LINE L1 5776 5834 -1974 1583 182 0 55 chrX 107485180 107485487 -55114443 + AluJb SINE Alu 8 297 -15 1489 247 9 29 chrX 107485487 107485876 -55114054 + L1MD1 LINE L1 5834 7796 -12 8025 122 41 14 chrX 107485893 107486215 -55113715 + HSMAR2 DNA Mariner 6 318 -984 1571 65 0 0 chrX 107486215 107486400 -55113530 - L1PA3 LINE L1 0 6155 5971 8025 122 41 14 chrX 107486400 107487339 -55112591 + HSMAR2 DNA Mariner 318 1301 -1 2328 92 3 3 chrX 107487378 107487672 -55112258 - AluSq SINE Alu -19 294 1 6187 168 8 3 chrX 107487688 107488805 -55111125 + L1PA15-16 LINE L1 1783 2905 -3944 3434 224 42 43 chrX 107488905 107489876 -55110054 - L1M4 LINE L1 -1387 4759 3788 2238 76 0 57 chrX 107489876 107490190 -55109740 - AluY SINE Alu -15 296 1 3434 224 42 43 chrX 107490190 107490281 -55109649 - L1M4 LINE L1 -2358 3788 3698 259 134 12 49 chrX 107490298 107490380 -55109550 + CT-rich Low_complexity Low_complexity 1 79 0 1054 228 120 8 chrX 107490483 107490882 -55109048 - L1M4 LINE L1 -2518 3628 3185 1335 152 0 14 chrX 107490882 107491093 -55108837 - AluJb SINE Alu -13 299 92 207 211 0 0 chrX 107492544 107492582 -55107348 + (CATA)n Simple_repeat Simple_repeat 3 40 0 488 318 108 34 chrX 107492622 107493242 -55106688 - L1MC4a LINE L1 -1889 5919 5254 23 0 0 0 chrX 107493297 107493320 -55106610 + AT_rich Low_complexity Low_complexity 1 23 0 1049 72 0 0 chrX 107493320 107493445 -55106485 - AluSq/x SINE Alu -188 125 1 591 180 193 13 chrX 107493445 107493606 -55106324 - L1M4 LINE L1 -2965 3181 3050 1703 121 13 89 chrX 107493606 107493919 -55106011 + AluSx SINE Alu 1 289 -23 591 180 193 13 chrX 107493919 107493996 -55105934 - L1M4 LINE L1 -3096 3050 2900 528 286 78 20 chrX 107494167 107494412 -55105518 - MIR SINE MIR -1 261 3 255 304 14 54 chrX 107494420 107494568 -55105362 + L2 LINE L2 3168 3309 -4 1478 243 34 56 chrX 107494784 107495286 -55104644 - MER74B LTR ERVL -75 547 57 1125 139 0 0 chrX 107495270 107495435 -55104495 - Tigger2 DNA MER2_type -2006 712 548 * 4332 139 33 8 chrX 107495437 107496161 -55103769 + Tigger2 DNA MER2_type 3 744 -1974 1394 130 117 0 chrX 107496227 107496457 -55103473 + Tigger2 DNA MER2_type 2462 2718 0 223 197 0 28 chrX 107496646 107496717 -55103213 + CT-rich Low_complexity Low_complexity 4 72 0 513 68 0 0 chrX 107496717 107496791 -55103139 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 464 197 87 16 chrX 107496824 107496951 -55102979 - MIR SINE MIR -5 257 122 501 80 0 0 chrX 107497220 107497295 -55102635 + (CA)n Simple_repeat Simple_repeat 2 76 0 * 513 32 0 0 chrX 107497294 107497357 -55102573 + (GA)n Simple_repeat Simple_repeat 2 64 0 649 333 32 8 chrX 107497387 107497633 -55102297 + MIR SINE MIR 3 254 -8 2348 103 0 0 chrX 107497936 107498236 -55101694 - AluSx SINE Alu -12 300 1 672 277 33 33 chrX 107498788 107499001 -55100929 + MIR SINE MIR 19 231 -31 282 56 0 0 chrX 107499210 107499246 -55100684 + (TCCCC)n Simple_repeat Simple_repeat 1 36 0 2036 120 0 0 chrX 107499247 107499522 -55100408 - AluSx SINE Alu -37 275 1 315 0 0 0 chrX 107499633 107499668 -55100262 + (TG)n Simple_repeat Simple_repeat 2 36 0 396 231 183 52 chrX 107502084 107502257 -55097673 + MIR3 SINE MIR 10 201 -7 1034 217 0 0 chrX 107503228 107503403 -55096527 + FAM SINE Alu 1 175 0 580 245 39 54 chrX 107503436 107503573 -55096357 + MIR SINE MIR 60 195 -67 2333 111 36 30 chrX 107503573 107503935 -55095995 - THE1B LTR MaLR 0 364 1 580 245 39 54 chrX 107503935 107504001 -55095929 + MIR SINE MIR 195 260 -2 217 325 9 18 chrX 107504038 107504152 -55095778 + CT-rich Low_complexity Low_complexity 1 113 0 700 302 64 8 chrX 107504651 107504886 -55095044 + MIR SINE MIR 15 262 0 457 275 99 23 chrX 107504905 107505076 -55094854 - MIR SINE MIR -77 185 2 368 233 33 100 chrX 107505387 107505537 -55094393 + MIR SINE MIR 85 224 -38 327 104 0 0 chrX 107506038 107506086 -55093844 + (TG)n Simple_repeat Simple_repeat 2 49 0 183 206 164 27 chrX 107506468 107506541 -55093389 + MIR SINE MIR 124 206 -56 283 262 71 28 chrX 107506643 107506784 -55093146 + MER103 DNA DNA 13 159 -7 485 162 0 54 chrX 107509523 107509634 -55090296 - L1MA7 LINE L1 0 6291 6187 377 113 28 42 chrX 107509965 107510036 -55089894 - MLT1A1 LTR MaLR -295 70 1 573 309 83 38 chrX 107510055 107510450 -55089480 - L2 LINE L2 -973 2341 1929 230 290 0 16 chrX 107510528 107510590 -55089340 + CT-rich Low_complexity Low_complexity 5 65 0 212 183 70 56 chrX 107510597 107510668 -55089262 - L2 LINE L2 -1635 1679 1608 915 185 22 81 chrX 107510794 107510962 -55088968 + MER3 DNA MER1_type 1 177 -32 300 53 0 0 chrX 107510962 107511000 -55088930 + (ATTG)n Simple_repeat Simple_repeat 3 40 0 2072 142 0 0 chrX 107511000 107511282 -55088648 - AluSx SINE Alu -30 282 1 915 185 22 81 chrX 107511282 107511334 -55088596 + MER3 DNA MER1_type 175 209 0 977 216 9 35 chrX 107511911 107512143 -55087787 + MIR SINE MIR 37 262 0 519 304 154 72 chrX 107512314 107513106 -55086824 - L2 LINE L2 -2239 1075 219 1827 201 73 5 chrX 107513252 107513691 -55086239 + Charlie4a DNA MER1_type 1 469 -39 1417 161 5 0 chrX 107513821 107514065 -55085865 - AluSg/x SINE Alu 0 312 71 273 57 0 0 chrX 107514065 107514100 -55085830 - Alu SINE Alu -262 38 4 413 227 34 85 chrX 107514827 107514982 -55084948 + MER5A DNA MER1_type 1 148 -41 825 157 5 130 chrX 107514982 107515198 -55084732 + MER5A DNA MER1_type 1 189 0 413 227 34 85 chrX 107515198 107515218 -55084712 + MER5A DNA MER1_type 148 167 -22 187 288 12 100 chrX 107515294 107515374 -55084556 - MIR SINE MIR -113 95 23 603 317 73 33 chrX 107515860 107516163 -55083767 + L2 LINE L2 2344 2658 -656 5648 242 73 22 chrX 107516175 107516336 -55083594 - L2 LINE L2 -1357 1957 1806 1495 180 59 3 chrX 107516336 107516641 -55083289 - MER33 DNA MER1_type 0 324 3 5648 242 73 22 chrX 107516641 107518077 -55081853 - L2 LINE L2 -1508 1806 279 237 330 20 40 chrX 107518138 107518238 -55081692 + L2 LINE L2 1830 1927 -1387 1083 185 0 0 chrX 107518279 107518317 -55081613 + MER3 DNA MER1_type 10 47 -162 301 263 37 68 chrX 107518317 107518507 -55081423 - MER3 DNA MER1_type 0 209 26 321 352 141 11 chrX 107518507 107518868 -55081062 + L2 LINE L2 1984 2391 -923 589 329 54 53 chrX 107518944 107519383 -55080547 + L2 LINE L2 2614 3059 -213 490 320 73 18 chrX 107520264 107520483 -55079447 - MIR SINE MIR -29 233 3 281 272 107 21 chrX 107520599 107520764 -55079166 - L1ME LINE L1 -334 5787 5613 288 280 148 44 chrX 107520797 107520979 -55078951 - L2 LINE L2 0 3272 3072 342 344 49 0 chrX 107521379 107521501 -55078429 - L2 LINE L2 -24 3248 3121 261 359 17 8 chrX 107521606 107521723 -55078207 + MIR3 SINE MIR 85 202 -6 629 303 52 28 chrX 107521968 107522219 -55077711 - MIR SINE MIR -1 261 5 664 308 52 40 chrX 107522250 107522695 -55077235 + L2 LINE L2 2303 2752 -562 1102 239 18 11 chrX 107522701 107522973 -55076957 + Charlie8 DNA MER1_type 1 274 -2143 354 321 168 47 chrX 107523156 107523542 -55076388 + L2 LINE L2 2840 3272 0 887 284 59 0 chrX 107523847 107524083 -55075847 - MIR SINE MIR -10 252 3 331 216 22 141 chrX 107525179 107525310 -55074620 + MIR3 SINE MIR 2 119 -89 301 304 61 95 chrX 107525771 107526067 -55073863 + L2 LINE L2 2966 3251 -21 257 183 17 0 chrX 107527434 107527494 -55072436 + C-rich Low_complexity Low_complexity 1 61 0 185 94 31 0 chrX 107527644 107527676 -55072254 + CT-rich Low_complexity Low_complexity 3 35 0 304 259 7 96 chrX 107582810 107582945 -55016985 + LTR67 LTR ERVL 426 548 -9 186 71 0 0 chrX 107584063 107584091 -55015839 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 856 241 30 5 chrX 107584091 107584294 -55015636 - MIR SINE MIR -3 259 52 321 271 161 7 chrX 107584816 107584971 -55014959 - MIR SINE MIR 0 262 84 889 251 66 17 chrX 107585397 107585711 -55014219 + MLT1J LTR MaLR 23 409 -102 296 294 101 18 chrX 107585822 107585931 -55013999 - MIR3 SINE MIR -17 191 74 190 316 20 41 chrX 107586110 107586208 -55013722 - MER5B DNA MER1_type 0 178 83 * 192 151 0 132 chrX 107586189 107586242 -55013688 + MER5A DNA MER1_type 124 169 -20 * 226 229 16 33 chrX 107586212 107586273 -55013657 - MER5A DNA MER1_type -129 60 1 1006 154 42 75 chrX 107587032 107587275 -55012655 + AluJo SINE Alu 76 311 0 2312 101 0 0 chrX 107587433 107587740 -55012190 - AluSg1 SINE Alu -1 308 2 768 229 59 6 chrX 107588203 107588373 -55011557 + MIR3 SINE MIR 23 201 -7 203 286 0 0 chrX 107588430 107588472 -55011458 - MER5A DNA MER1_type 0 189 148 950 262 41 4 chrX 107588497 107588764 -55011166 + L1MC4a LINE L1 5661 5937 -1871 314 122 81 35 chrX 107588764 107588936 -55010994 + (TA)n Simple_repeat Simple_repeat 1 180 0 337 307 84 44 chrX 107588957 107589182 -55010748 + L1MC4a LINE L1 5958 6191 -1617 812 164 0 0 chrX 107589526 107589654 -55010276 - MSTA LTR MaLR 0 428 301 591 101 22 0 chrX 107589697 107589786 -55010144 - MSTA LTR MaLR -336 92 2 426 260 48 120 chrX 107590149 107590357 -55009573 - MIR SINE MIR -48 214 22 572 48 58 0 chrX 107591449 107591552 -55008378 + A-rich Low_complexity Low_complexity 2 110 0 1053 216 12 37 chrX 107591596 107591837 -55008093 + MIR SINE MIR 23 257 -5 333 304 246 0 chrX 107591851 107591894 -55008036 - L2 LINE L2 -1 3312 3281 1211 210 13 13 chrX 107591894 107592118 -55007812 - MER58A DNA MER1_type 0 224 1 333 304 246 0 chrX 107592118 107592314 -55007616 - L2 LINE L2 -32 3281 3014 1726 164 37 74 chrX 107592479 107592717 -55007213 - MLT1A1 LTR MaLR 0 365 145 2002 142 10 0 chrX 107592717 107593020 -55006910 - AluJb SINE Alu -6 306 1 1726 164 37 74 chrX 107593020 107593160 -55006770 - MLT1A1 LTR MaLR -220 145 1 752 246 98 30 chrX 107593210 107593446 -55006484 + MIR SINE MIR 3 254 -8 1598 186 26 85 chrX 107593540 107593702 -55006228 + MLT1A1 LTR MaLR 1 171 -194 2077 137 10 0 chrX 107593702 107594009 -55005921 + AluSg SINE Alu 1 310 0 1598 186 26 85 chrX 107594009 107594234 -55005696 + MLT1A1 LTR MaLR 171 365 0 531 268 98 17 chrX 107594291 107594526 -55005404 - MIR SINE MIR -8 254 1 26 30 0 0 chrX 107595119 107595152 -55004778 + AT_rich Low_complexity Low_complexity 1 33 0 342 147 0 0 chrX 107596328 107596396 -55003534 + (TG)n Simple_repeat Simple_repeat 2 69 0 1467 171 0 18 chrX 107596486 107596714 -55003216 - MER58A DNA MER1_type 0 224 1 410 239 86 37 chrX 107597319 107597482 -55002448 + MER117 DNA MER1_type 3 173 -24 209 289 62 124 chrX 107597756 107598078 -55001852 - L2 LINE L2 -17 3296 2995 252 0 0 0 chrX 107598240 107598268 -55001662 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7001 131 9 16 chrX 107598472 107599458 -55000472 - L1MA3 LINE L1 0 7724 6749 2158 117 17 0 chrX 107599458 107599749 -55000181 - AluSx SINE Alu -16 296 1 7001 131 9 16 chrX 107599749 107600544 -54999386 - L1MA3 LINE L1 -975 6749 5950 1731 106 125 0 chrX 107600544 107600808 -54999122 - AluSx SINE Alu -15 297 1 14129 157 17 1 chrX 107600809 107603007 -54996923 - L1MA3 LINE L1 -5313 2252 19 1416 279 176 7 chrX 107603145 107603817 -54996113 - L1MC4a LINE L1 -743 5403 5187 496 276 35 35 chrX 107604117 107604291 -54995639 + MER5A DNA MER1_type 2 175 -14 369 0 0 0 chrX 107604518 107604559 -54995371 + (TG)n Simple_repeat Simple_repeat 2 42 0 460 243 92 72 chrX 107605157 107605209 -54994721 + MER5A DNA MER1_type 34 83 -106 1678 153 30 43 chrX 107605209 107605509 -54994421 - AluJb SINE Alu -16 296 1 460 243 92 72 chrX 107605509 107605608 -54994322 + MER5A DNA MER1_type 83 188 -1 205 222 0 79 chrX 107606356 107606419 -54993511 - L2 LINE L2 -363 2951 2894 1076 228 13 0 chrX 107606750 107606983 -54992947 + MER106A DNA MER1_type 1 236 0 366 286 155 36 chrX 107607429 107607597 -54992333 + L2 LINE L2 321 508 -2806 1662 158 20 0 chrX 107607622 107607875 -54992055 + AluSx SINE Alu 1 258 -54 333 68 0 0 chrX 107607892 107607936 -54991994 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 809 278 106 47 chrX 107608115 107608499 -54991431 + L2 LINE L2 2664 3089 -224 2505 58 3 7 chrX 107608499 107608783 -54991147 + AluSp SINE Alu 1 285 -28 411 73 0 0 chrX 107608783 107608838 -54991092 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2505 58 3 7 chrX 107608838 107608862 -54991068 + AluSp SINE Alu 285 308 -5 809 278 106 47 chrX 107608862 107609069 -54990861 + L2 LINE L2 3089 3282 -31 1765 210 84 42 chrX 107609069 107609614 -54990316 + MLT1F1 LTR MaLR 1 567 0 993 332 75 19 chrX 107609682 107609832 -54990098 + L2 LINE L2 809 949 -2365 1679 262 40 40 chrX 107609832 107610282 -54989648 - LTR16A LTR ERVL 0 450 1 993 332 75 19 chrX 107610282 107610746 -54989184 + L2 LINE L2 949 1457 -1857 290 303 114 23 chrX 107610754 107610886 -54989044 + L2 LINE L2 2506 2649 -665 254 351 35 64 chrX 107610914 107611085 -54988845 + L2 LINE L2 2907 3072 -200 1261 165 62 5 chrX 107611146 107611370 -54988560 - MLT1F LTR MaLR 0 542 306 443 301 45 93 chrX 107612219 107612551 -54987379 - L2 LINE L2 -11 3261 2946 539 224 82 77 chrX 107613241 107613424 -54986506 - Charlie8 DNA MER1_type -2206 211 28 705 284 84 0 chrX 107613674 107613889 -54986041 - MIR SINE MIR -17 245 13 237 203 98 114 chrX 107614020 107614143 -54985787 - MIR3 SINE MIR -78 130 10 217 333 10 10 chrX 107615799 107615895 -54984035 + GA-rich Low_complexity Low_complexity 1 96 0 208 380 0 0 chrX 107616055 107616126 -54983804 + L2 LINE L2 3172 3242 -71 1019 244 86 50 chrX 107616131 107616486 -54983444 - MLT1I LTR MaLR -5 404 24 1001 229 38 70 chrX 107616990 107617143 -54982787 + L2 LINE L2 2325 2464 -850 5367 40 5 0 chrX 107617143 107617749 -54982181 + L1PA5 LINE L1 5546 6154 0 1001 229 38 70 chrX 107617749 107617910 -54982020 + L2 LINE L2 2464 2629 -685 245 271 97 101 chrX 107617926 107618214 -54981716 - MLT1I LTR MaLR -22 387 101 * 345 252 17 42 chrX 107618184 107618303 -54981627 - MLT1H LTR MaLR -387 162 47 1244 235 26 55 chrX 107618363 107618746 -54981184 + L2 LINE L2 2942 3313 0 210 268 18 0 chrX 107619460 107619516 -54980414 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 180 0 0 0 chrX 107619533 107619553 -54980377 + (TATAA)n Simple_repeat Simple_repeat 1 20 0 797 271 80 86 chrX 107619593 107620129 -54979801 + MLT1H LTR MaLR 17 549 0 596 293 50 11 chrX 107620201 107620382 -54979548 + MIR SINE MIR 75 262 0 1807 172 3 16 chrX 107621309 107621623 -54978307 - AluJb SINE Alu 0 312 3 319 232 11 53 chrX 107622733 107622828 -54977102 - MER102b DNA MER1_type -17 324 234 528 260 114 36 chrX 107622936 107623155 -54976775 - MER102b DNA MER1_type -90 251 16 415 266 28 9 chrX 107623825 107623934 -54975996 - L2 LINE L2 -1 3271 3161 591 263 13 20 chrX 107624080 107624232 -54975698 + MIR SINE MIR 20 170 -92 1197 107 200 0 chrX 107624576 107624791 -54975139 - MER6 DNA MER2_type 0 865 608 883 216 85 30 chrX 107624814 107625013 -54974917 - MER63A DNA MER1_type 0 210 1 512 171 67 0 chrX 107625061 107625166 -54974764 + MER96 DNA MER1_type? 1 112 -63 527 294 167 18 chrX 107625215 107625490 -54974440 - L2 LINE L2 0 3313 2998 2263 109 3 6 chrX 107625508 107625820 -54974110 + AluSx SINE Alu 1 311 -1 204 343 100 0 chrX 107625922 107625992 -54973938 - L2 LINE L2 0 3272 3196 * 601 285 0 13 chrX 107625986 107626137 -54973793 - MIR SINE MIR -3 259 111 515 170 0 11 chrX 107626299 107626393 -54973537 - AluJ/FRAM SINE Alu -3 309 217 194 359 137 0 chrX 107626843 107626960 -54972970 - L2 LINE L2 -257 3015 2883 437 319 14 0 chrX 107627033 107627171 -54972759 + MIR SINE MIR 102 241 -21 215 149 255 0 chrX 107627248 107627295 -54972635 + MIR SINE MIR 191 249 -13 761 202 0 0 chrX 107627579 107627693 -54972237 + FLAM_A SINE Alu 1 114 -19 1717 151 13 33 chrX 107627694 107627999 -54971931 + AluJo SINE Alu 5 303 -9 261 266 0 0 chrX 107628087 107628151 -54971779 + CT-rich Low_complexity Low_complexity 3 66 0 441 292 73 44 chrX 107628160 107628196 -54971734 - MIR SINE MIR -12 250 217 1611 133 0 0 chrX 107628196 107628414 -54971516 - AluJb SINE Alu -9 303 86 441 292 73 44 chrX 107628414 107628583 -54971347 - MIR SINE MIR -45 217 40 584 224 92 0 chrX 107628604 107628756 -54971174 - MIR SINE MIR -33 229 64 2321 99 0 0 chrX 107629842 107630136 -54969794 + AluSx SINE Alu 1 294 -18 1771 282 137 21 chrX 107630284 107631093 -54968837 - L1MC4a LINE L1 -1641 6167 5265 29 0 0 0 chrX 107631103 107631132 -54968798 + AT_rich Low_complexity Low_complexity 1 29 0 479 153 35 0 chrX 107631132 107631217 -54968713 - L1MA2 LINE L1 -1 6303 6216 2579 137 43 9 chrX 107631238 107631660 -54968270 + L1MA6 LINE L1 5865 6300 0 527 191 17 26 chrX 107631871 107631986 -54967944 - L2 LINE L2 -7 3306 3193 211 250 0 105 chrX 107632375 107632451 -54967479 + L2 LINE L2 3205 3272 0 1074 205 117 0 chrX 107632485 107632724 -54967206 - MLT1F1 LTR MaLR -7 560 294 1533 280 123 47 chrX 107632816 107633652 -54966278 - L2 LINE L2 -557 2757 1858 271 286 0 0 chrX 107633873 107633936 -54965994 - MIR SINE MIR -21 241 179 2512 44 0 0 chrX 107634136 107634433 -54965497 - AluY SINE Alu -14 297 1 261 301 45 53 chrX 107634817 107634950 -54964980 + L2 LINE L2 3182 3313 0 1241 221 40 26 chrX 107635308 107635611 -54964319 + MER46C DNA MER2_type 32 338 0 402 115 0 0 chrX 107635788 107635849 -54964081 + (TA)n Simple_repeat Simple_repeat 1 61 0 8030 28 3 0 chrX 107635849 107637234 -54962696 - L1PA5 LINE L1 -8 6146 4760 7184 31 0 0 chrX 107637234 107638068 -54961862 + L1PA5 LINE L1 3919 4752 -1394 318 199 92 30 chrX 107638421 107638552 -54961378 - MER113 DNA MER1_type? -376 145 7 228 111 0 0 chrX 107638821 107638857 -54961073 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 533 194 58 0 chrX 107639482 107639585 -54960345 - MER81 DNA DNA -1 113 5 780 261 6 6 chrX 107639719 107639899 -54960031 - MIR SINE MIR -80 182 3 287 287 112 70 chrX 107640099 107640242 -54959688 + MER5A DNA MER1_type 30 189 0 386 272 87 0 chrX 107640455 107640558 -54959372 + MIR3 SINE MIR 43 154 -54 204 189 0 0 chrX 107640551 107640588 -54959342 - MER5A DNA MER1_type -103 86 50 * 198 0 0 0 chrX 107640813 107640835 -54959095 + (A)n Simple_repeat Simple_repeat 1 22 0 1447 210 109 21 chrX 107641209 107641547 -54958383 - MSTD LTR MaLR 0 396 29 6275 137 16 2 chrX 107641547 107643327 -54956603 + L1PB1 LINE L1 4300 6099 -52 266 167 103 12 chrX 107643327 107643416 -54956514 - MSTC LTR MaLR -335 97 1 769 291 27 5 chrX 107643417 107643637 -54956293 - MIR SINE MIR -32 230 6 551 321 18 12 chrX 107644352 107644517 -54955413 - MIR3 SINE MIR -13 195 30 1044 271 43 70 chrX 107644745 107645214 -54954716 - LTR16B LTR ERVL -8 456 1 2365 104 0 0 chrX 107645744 107646043 -54953887 + AluSq SINE Alu 1 299 -14 543 272 89 114 chrX 107646211 107646649 -54953281 - L2 LINE L2 0 3313 2887 3540 244 111 12 chrX 107646656 107647547 -54952383 + L1MD2 LINE L1 141 1119 -5424 1284 210 75 43 chrX 107647533 107647904 -54952026 + L1MD2 LINE L1 1334 1716 -4824 * 1694 171 24 30 chrX 107647904 107648202 -54951728 + AluJo SINE Alu 1 296 -16 44888 42 0 2 chrX 107648204 107654354 -54945576 + L1PA4 LINE L1 1 6164 0 186 0 40 0 chrX 107654354 107654379 -54945551 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 198 0 0 0 chrX 107654908 107654930 -54945000 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1995 212 111 2 chrX 107654950 107655484 -54944446 + L1MD2 LINE L1 1705 2296 -4244 * 4563 83 22 2 chrX 107655477 107656115 -54943815 + L1MA2 LINE L1 5433 6083 -221 836 80 0 0 chrX 107656117 107656230 -54943700 + L1MA1 LINE L1 6190 6302 0 4263 191 81 67 chrX 107656243 107656847 -54943083 + L1MD2 LINE L1 5375 5969 -784 1586 142 33 43 chrX 107656847 107657149 -54942781 + AluJb SINE Alu 1 299 -13 4263 191 81 67 chrX 107657149 107657906 -54942024 + L1MD2 LINE L1 5969 6753 0 856 233 95 61 chrX 107657907 107658298 -54941632 - L2 LINE L2 -425 2889 2486 483 285 39 0 chrX 107658535 107658665 -54941265 - MER91A DNA MER1_type -34 162 28 603 267 6 33 chrX 107660838 107660877 -54939053 + MIR SINE MIR 5 44 -218 402 21 0 0 chrX 107660877 107660924 -54939006 + (TG)n Simple_repeat Simple_repeat 2 48 0 898 134 21 0 chrX 107660924 107661066 -54938864 - L1MB4 LINE L1 -13 6167 6023 603 267 6 33 chrX 107661066 107661205 -54938725 + MIR SINE MIR 42 179 -83 182 243 0 0 chrX 107661278 107661315 -54938615 - L2 LINE L2 -19 3253 3217 698 171 0 16 chrX 107661465 107661594 -54938336 - FLAM_A SINE Alu -5 137 11 2262 121 0 6 chrX 107661827 107662188 -54937742 + AluSx SINE Alu 1 359 0 4436 92 28 5 chrX 107663937 107664575 -54935355 + MER39B LTR ERV1 1 653 0 180 0 0 0 chrX 107664588 107664608 -54935322 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2130 141 0 0 chrX 107664632 107664944 -54934986 + AluSx SINE Alu 1 312 0 333 0 0 0 chrX 107665011 107665048 -54934882 + (TA)n Simple_repeat Simple_repeat 2 38 0 2415 78 0 25 chrX 107665848 107666167 -54933763 + AluY SINE Alu 1 311 0 1586 161 22 53 chrX 107666167 107666489 -54933441 + AluJb SINE Alu 1 312 0 2528 79 0 0 chrX 107666712 107667016 -54932914 + AluSg SINE Alu 1 304 -6 1721 165 0 0 chrX 107667148 107667408 -54932522 - AluJb SINE Alu -12 300 41 859 268 84 7 chrX 107667689 107667976 -54931954 - L2 LINE L2 0 3313 3005 2761 172 44 4 chrX 107668001 107668543 -54931387 + L1MB7 LINE L1 5606 6169 -15 2316 95 7 0 chrX 107668564 107668858 -54931072 + AluSx SINE Alu 1 296 -16 1384 306 17 11 chrX 107668936 107669496 -54930434 - L2 LINE L2 -312 3001 2438 383 344 82 45 chrX 107670351 107671043 -54928887 + L2 LINE L2 2336 3048 -224 247 288 62 0 chrX 107671715 107671795 -54928135 - MIR3 SINE MIR -14 194 110 204 349 61 38 chrX 107672098 107672230 -54927700 + L2 LINE L2 3179 3313 0 376 238 48 0 chrX 107672257 107672362 -54927568 - MIR SINE MIR -48 214 105 2324 92 0 0 chrX 107672740 107673034 -54926896 + AluSc SINE Alu 1 294 -15 549 208 0 0 chrX 107673268 107673396 -54926534 - AluJb SINE Alu 0 311 184 5368 119 242 70 chrX 107673408 107674746 -54925184 + pTR5 LTR ERV1 145 2295 -143 36 0 0 0 chrX 107674757 107674793 -54925137 + AT_rich Low_complexity Low_complexity 1 36 0 262 163 82 0 chrX 107674793 107674842 -54925088 - AluJo SINE Alu -168 134 82 207 69 0 0 chrX 107674901 107674930 -54925000 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2113 142 18 0 chrX 107675168 107675499 -54924431 + L1PA13 LINE L1 5808 6144 -19 245 268 0 0 chrX 107676019 107676090 -54923840 + MIR SINE MIR 65 135 -73 745 215 58 93 chrX 107676125 107676436 -54923494 + L1MC5 LINE L1 7609 7908 -53 915 154 0 0 chrX 107676678 107676808 -54923122 - AluSg/x SINE Alu -31 279 150 680 101 22 7 chrX 107676816 107676955 -54922975 + (TA)n Simple_repeat Simple_repeat 1 141 0 22 0 0 0 chrX 107676982 107677004 -54922926 + AT_rich Low_complexity Low_complexity 1 22 0 808 126 42 0 chrX 107677004 107677123 -54922807 - AluSq/x SINE Alu -188 124 1 180 0 0 0 chrX 107677124 107677144 -54922786 + (TA)n Simple_repeat Simple_repeat 2 21 0 526 269 134 6 chrX 107678060 107678231 -54921699 - MIR SINE MIR -65 197 5 2126 114 82 62 chrX 107678970 107679409 -54920521 + LTR7 LTR ERV1 1 448 -2 20165 90 48 4 chrX 107679411 107682271 -54917659 + HERVH LTR ERV1 1 2987 -4726 848 150 27 0 chrX 107682265 107682412 -54917518 + HERVH LTR ERV1 3140 3290 -4423 * 3072 106 0 7 chrX 107682402 107682844 -54917086 + HERVH LTR ERV1 3492 3930 -3783 424 143 63 0 chrX 107682848 107682911 -54917019 + HERVH LTR ERV1 5753 5819 -1894 2535 87 45 13 chrX 107682911 107683289 -54916641 + HERVH LTR ERV1 7324 7713 0 1959 113 66 109 chrX 107683289 107683757 -54916173 + LTR7 LTR ERV1 1 448 -2 424 333 122 35 chrX 107683784 107684719 -54915211 - L2 LINE L2 -11 3261 2245 464 146 11 0 chrX 107684963 107685052 -54914878 + GA-rich Low_complexity Low_complexity 2 91 0 693 268 25 10 chrX 107687397 107687595 -54912335 + MIR SINE MIR 27 227 -35 354 284 82 8 chrX 107688111 107688245 -54911685 - MER5B DNA MER1_type -29 149 6 413 293 0 54 chrX 107688283 107688430 -54911500 - MER5A DNA MER1_type -7 182 44 1830 222 55 54 chrX 107688580 107689121 -54910809 - MLT1F LTR MaLR 0 542 1 27 62 0 0 chrX 107689129 107689177 -54910753 + AT_rich Low_complexity Low_complexity 1 48 0 2629 107 10 23 chrX 107689672 107690064 -54909866 - MLT1B LTR MaLR 0 390 4 2512 123 44 19 chrX 107692900 107693330 -54906600 - L1PA16 LINE L1 0 6166 5726 753 271 42 5 chrX 107693392 107693606 -54906324 - MIR SINE MIR -13 249 28 1705 182 3 17 chrX 107694392 107694688 -54905242 + AluJb SINE Alu 1 292 -20 516 298 26 78 chrX 107694769 107695078 -54904852 - HAL1 LINE L1 -3 2504 2212 1234 241 81 37 chrX 107695087 107695493 -54904437 - HAL1 LINE L1 -446 2061 1638 608 208 108 17 chrX 107695471 107695702 -54904228 - HAL1 LINE L1 -1077 1430 1179 * 240 111 0 0 chrX 107695827 107695863 -54904067 + (T)n Simple_repeat Simple_repeat 1 36 0 993 286 54 45 chrX 107696583 107697031 -54902899 - HAL1 LINE L1 -1442 1065 614 180 97 0 0 chrX 107697145 107697176 -54902754 - MIR SINE MIR 0 262 232 192 77 0 0 chrX 107697207 107697233 -54902697 + (T)n Simple_repeat Simple_repeat 1 26 0 2405 74 7 0 chrX 107697271 107697567 -54902363 - AluY SINE Alu -13 298 1 465 268 16 0 chrX 107697576 107697703 -54902227 + L1ME LINE L1 5695 5823 -298 613 181 226 45 chrX 107697914 107698091 -54901839 + MER63A DNA MER1_type 1 209 -1 2129 130 0 3 chrX 107699048 107699340 -54900590 + AluSq SINE Alu 1 291 -22 288 0 0 0 chrX 107700178 107700210 -54899720 + (TG)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chrX 107702088 107702112 -54897818 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 279 104 0 0 chrX 107702111 107702159 -54897771 + (CA)n Simple_repeat Simple_repeat 1 48 0 23 0 0 0 chrX 107703464 107703487 -54896443 + AT_rich Low_complexity Low_complexity 1 23 0 1799 191 16 32 chrX 107703487 107703858 -54896072 - MSTB2 LTR MaLR -59 398 34 267 315 23 17 chrX 107705308 107705430 -54894500 + MIR SINE MIR 41 160 -62 * 284 257 26 118 chrX 107705414 107705566 -54894364 + MIR SINE MIR 17 154 -108 216 195 0 0 chrX 107705606 107705647 -54894283 + L2 LINE L2 3273 3313 0 2132 107 0 31 chrX 107706305 107706622 -54893308 + AluY SINE Alu 1 307 -4 2028 115 28 0 chrX 107707063 107707350 -54892580 + AluSg SINE Alu 1 295 -15 509 313 17 6 chrX 107708336 107708515 -54891415 + MIR SINE MIR 9 189 -73 27 29 0 0 chrX 107708565 107708599 -54891331 + AT_rich Low_complexity Low_complexity 1 34 0 1522 161 95 10 chrX 107710095 107710351 -54889579 - MER58B DNA MER1_type -2085 335 48 219 36 0 0 chrX 107710351 107710379 -54889551 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1522 161 95 10 chrX 107710379 107710426 -54889504 - MER58B DNA MER1_type -2372 48 6 2216 299 74 52 chrX 107710582 107712012 -54887918 - L2 LINE L2 -5 3308 1857 2305 97 10 0 chrX 107712189 107712488 -54887442 - AluSx SINE Alu -8 304 3 513 245 90 32 chrX 107712526 107712714 -54887216 - L2 LINE L2 0 3313 3115 881 252 59 28 chrX 107712715 107713101 -54886829 - MLT1J2 LTR MaLR -3 447 14 222 150 0 0 chrX 107713132 107713172 -54886758 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 2341 101 3 0 chrX 107713175 107713483 -54886447 - AluSc SINE Alu 0 309 1 510 345 31 14 chrX 107713512 107713735 -54886195 - L2 LINE L2 -219 3053 2827 781 224 50 15 chrX 107714295 107714496 -54885434 - MIR SINE MIR -35 227 20 311 291 117 10 chrX 107714534 107714637 -54885293 - L2 LINE L2 -6 3266 3153 1073 159 25 111 chrX 107714645 107714991 -54884939 + MER58 DNA MER1_type 26 2420 0 11144 25 0 0 chrX 107715006 107716314 -54883616 - L1P LINE L1 -2211 3935 2628 449 271 88 17 chrX 107716370 107716551 -54883379 + MIR SINE MIR 19 212 -50 8763 110 40 7 chrX 107716592 107717852 -54882078 + HSMAR2 DNA Mariner 1 1302 0 235 310 0 28 chrX 107717908 107717979 -54881951 - L2 LINE L2 -195 3077 3009 * 738 317 4 25 chrX 107717971 107718211 -54881719 + MIR SINE MIR 28 262 0 526 264 78 18 chrX 107718277 107718444 -54881486 + MIR SINE MIR 86 262 0 191 174 65 0 chrX 107718446 107718492 -54881438 + L2 LINE L2 3218 3266 -6 413 211 11 11 chrX 107719654 107719749 -54880181 + MIR SINE MIR 168 262 0 331 250 19 48 chrX 107720072 107720176 -54879754 + Charlie8 DNA MER1_type 51 151 -2266 1988 99 56 26 chrX 107720179 107720330 -54879600 - AluY SINE Alu 0 311 166 1556 139 83 109 chrX 107720330 107720790 -54879140 - LTR7 LTR ERV1 -2 448 1 1988 99 56 26 chrX 107720790 107720940 -54878990 - AluY SINE Alu -145 166 1 392 237 53 30 chrX 107720965 107721096 -54878834 + Charlie8 DNA MER1_type 152 285 -2132 202 209 23 0 chrX 107721160 107721203 -54878727 + CT-rich Low_complexity Low_complexity 2 45 0 250 0 100 0 chrX 107721207 107721247 -54878683 + A-rich Low_complexity Low_complexity 2 45 0 1960 120 7 0 chrX 107721467 107721776 -54878154 + AluSc SINE Alu 15 325 0 1143 161 0 0 chrX 107721785 107721947 -54877983 + FAM SINE Alu 4 165 -10 739 258 147 4 chrX 107722430 107722655 -54877275 - MIR SINE MIR 0 262 6 768 181 17 28 chrX 107722658 107722835 -54877095 + MER5A DNA MER1_type 10 184 -5 2169 96 10 14 chrX 107723075 107723367 -54876563 - AluSc SINE Alu -18 291 1 274 333 12 0 chrX 107723460 107723544 -54876386 + MER81 DNA DNA 2 86 -28 428 330 0 0 chrX 107723546 107723649 -54876281 + MER81 DNA DNA 12 114 0 2251 108 0 7 chrX 107723770 107724076 -54875854 + AluSx SINE Alu 1 304 -8 406 221 106 89 chrX 107724259 107724608 -54875322 + L1ME4a LINE L1 5766 6120 -1 3745 97 34 0 chrX 107725764 107726261 -54873669 - MER75 DNA T2_type 0 514 1 780 244 156 0 chrX 107727235 107727440 -54872490 + MIR SINE MIR 26 262 0 1803 119 17 31 chrX 107728099 107728216 -54871714 + L1MB4 LINE L1 5891 6008 -172 2298 108 0 0 chrX 107728216 107728522 -54871408 - AluSx SINE Alu -6 306 1 1803 119 17 31 chrX 107728522 107728698 -54871232 + L1MB4 LINE L1 6008 6180 0 248 171 0 0 chrX 107728857 107728892 -54871038 + Alu SINE Alu 23 57 -245 2491 86 0 0 chrX 107728994 107729307 -54870623 - AluSq SINE Alu 0 313 1 658 216 16 22 chrX 107729338 107729528 -54870402 + L1MD1 LINE L1 6068 6234 -8 288 0 0 0 chrX 107730156 107730188 -54869742 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 324 70 0 0 chrX 107731227 107731270 -54868660 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2546 61 0 0 chrX 107731336 107731647 -54868283 + AluY SINE Alu 1 311 0 366 278 85 60 chrX 107732396 107732727 -54867203 - L1ME4a LINE L1 -1 6120 5782 1065 229 42 0 chrX 107732802 107733042 -54866888 - MIR SINE MIR 0 262 13 2230 92 14 3 chrX 107736721 107737016 -54862914 - AluSq SINE Alu -13 300 3 1352 77 0 0 chrX 107737048 107737216 -54862714 - L1PA8 LINE L1 -5 6167 6000 278 242 30 0 chrX 107737643 107737709 -54862221 - L2 LINE L2 0 3272 3205 490 271 137 80 chrX 107738274 107738662 -54861268 - MLT1K LTR MaLR -3 585 176 1368 177 68 4 chrX 107738692 107738941 -54860989 + AluJo SINE Alu 27 291 -21 31 0 0 0 chrX 107738941 107738972 -54860958 + AT_rich Low_complexity Low_complexity 1 31 0 2377 79 0 3 chrX 107739110 107739400 -54860530 - AluSc SINE Alu -20 289 1 4060 155 35 94 chrX 107739420 107740196 -54859734 - L1MB7 LINE L1 -22 6162 5470 2283 92 24 0 chrX 107740196 107740491 -54859439 - AluSp SINE Alu -11 302 1 4060 155 35 94 chrX 107740491 107741049 -54858881 - L1MB7 LINE L1 -714 5470 4881 2047 134 7 0 chrX 107741070 107741360 -54858570 - AluSp SINE Alu -21 292 1 2101 129 0 0 chrX 107741393 107741679 -54858251 + AluSx SINE Alu 1 286 -26 487 291 99 0 chrX 107742074 107742225 -54857705 + MIR SINE MIR 2 167 -95 301 277 24 0 chrX 107742313 107742396 -54857534 + L1MC4 LINE L1 6617 6701 -1341 183 229 0 0 chrX 107742406 107742467 -54857463 + (TATG)n Simple_repeat Simple_repeat 4 64 0 264 236 0 0 chrX 107742468 107742523 -54857407 - L1MC4 LINE L1 -1340 6702 6648 2830 213 24 10 chrX 107742560 107743185 -54856745 - L1MC4 LINE L1 -129 7913 7280 2333 104 3 0 chrX 107743243 107743551 -54856379 + AluSp SINE Alu 3 311 -2 206 333 0 0 chrX 107743552 107743609 -54856321 + MIR SINE MIR 205 261 -1 1185 249 54 27 chrX 107744186 107744628 -54855302 - L1M4 LINE L1 -2033 4113 3660 972 243 169 67 chrX 107744964 107745562 -54854368 + HAL1 LINE L1 1470 2128 -379 579 228 80 51 chrX 107745595 107745832 -54854098 + HAL1 LINE L1 2229 2472 -35 372 176 12 0 chrX 107745834 107745919 -54854011 - L1MC4 LINE L1 -958 7084 6999 * 5060 162 52 30 chrX 107745915 107745984 -54853946 - L1MD1 LINE L1 0 6636 6570 2349 100 0 0 chrX 107745984 107746293 -54853637 + AluY SINE Alu 1 309 -2 5060 162 52 30 chrX 107746293 107747412 -54852518 - L1MD1 LINE L1 -66 6570 5425 616 169 92 0 chrX 107747420 107747550 -54852380 - L1MD1 LINE L1 -4291 2249 2108 2104 127 0 0 chrX 107747588 107747872 -54852058 - AluSx SINE Alu -28 284 1 1159 52 0 0 chrX 107747872 107748006 -54851924 - AluY SINE Alu -177 134 1 267 31 0 0 chrX 107748307 107748339 -54851591 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2030 157 47 0 chrX 107748520 107748864 -54851066 - L1PA16 LINE L1 -1 6165 5806 842 184 22 16 chrX 107748866 107749051 -54850879 - L1MD1 LINE L1 -4426 2114 1929 386 146 214 0 chrX 107749083 107749186 -54850744 - L1MD1 LINE L1 -5205 1335 1211 1305 176 50 42 chrX 107749187 107749448 -54850482 - AluJo SINE Alu -47 265 3 3975 208 109 39 chrX 107749449 107749618 -54850312 - L1MDa LINE L1 -4600 1940 1784 2588 55 0 3 chrX 107749618 107749927 -54850003 - AluY SINE Alu -3 308 1 3975 208 109 39 chrX 107749927 107751433 -54848497 - L1MDa LINE L1 -4756 1784 1 423 0 0 0 chrX 107751452 107751499 -54848431 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 258 105 0 0 chrX 107753235 107753273 -54846657 + (ATG)n Simple_repeat Simple_repeat 3 40 0 2087 124 0 0 chrX 107753276 107753559 -54846371 - AluSq SINE Alu -30 283 1 228 268 61 12 chrX 107754821 107754903 -54845027 - L2 LINE L2 -3222 92 7 2285 90 14 0 chrX 107754944 107755234 -54844696 + AluSq SINE Alu 1 294 -19 1167 88 19 79 chrX 107755234 107755371 -54844559 - L1MB2 LINE L1 -7 6164 6041 2418 90 6 0 chrX 107755371 107755682 -54844248 + AluSp SINE Alu 1 313 0 1167 88 19 79 chrX 107755682 107755752 -54844178 - L1MB2 LINE L1 -130 6041 5968 180 97 0 0 chrX 107755829 107755860 -54844070 + (TTG)n Simple_repeat Simple_repeat 2 32 0 28 71 0 0 chrX 107806079 107806135 -54793795 + AT_rich Low_complexity Low_complexity 1 56 0 243 217 0 0 chrX 107806555 107806601 -54793329 + MIR3 SINE MIR 118 163 -45 472 224 91 42 chrX 107806601 107806766 -54793164 - MIR SINE MIR -2 260 88 449 203 97 16 chrX 107808110 107808246 -54791684 + MIR SINE MIR 25 164 -62 289 208 30 50 chrX 107810512 107810613 -54789317 + MIR3 SINE MIR 110 208 0 439 239 114 57 chrX 107811179 107811355 -54788575 + MIR3 SINE MIR 21 206 -2 254 233 0 17 chrX 107811357 107811417 -54788513 + (TA)n Simple_repeat Simple_repeat 2 60 0 2078 68 0 0 chrX 107811681 107811931 -54787999 + AluY SINE Alu 1 250 -61 2330 95 0 0 chrX 107812377 107812673 -54787257 - AluSg SINE Alu -14 296 1 2009 126 0 23 chrX 107812878 107813188 -54786742 - AluSx SINE Alu -9 303 1 2197 104 27 0 chrX 107813201 107813500 -54786430 - AluSg SINE Alu -3 307 1 27 62 0 0 chrX 107813629 107813677 -54786253 + AT_rich Low_complexity Low_complexity 1 48 0 278 219 73 0 chrX 107813728 107813810 -54786120 - HAL1b LINE L1 -68 1280 1193 1844 142 60 0 chrX 107814069 107814351 -54785579 - AluSx SINE Alu -13 299 1 28 48 0 0 chrX 107815031 107815073 -54784857 + AT_rich Low_complexity Low_complexity 1 42 0 1785 181 0 7 chrX 107816361 107816665 -54783265 - AluJb SINE Alu 0 312 11 364 289 33 25 chrX 107817571 107817692 -54782238 + MIR SINE MIR 33 154 -108 1708 99 80 4 chrX 107817711 107818000 -54781930 - AluSx SINE Alu 0 309 1 2173 108 0 17 chrX 107818071 107818366 -54781564 - AluSg SINE Alu -15 295 6 190 246 77 31 chrX 107818651 107818716 -54781214 + MER5C DNA MER1_type 18 85 -239 352 196 113 52 chrX 107818976 107819073 -54780857 - MIR SINE MIR -55 153 51 4873 165 70 16 chrX 107819717 107820311 -54779619 - L1MD2 LINE L1 -13 6346 5785 213 39 0 0 chrX 107820311 107820337 -54779593 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4873 165 70 16 chrX 107820337 107820759 -54779171 - L1MD2 LINE L1 -574 5785 5254 2316 63 17 30 chrX 107820759 107821061 -54778869 - AluY SINE Alu -13 298 1 4873 165 70 16 chrX 107821061 107821242 -54778688 - L1MD2 LINE L1 -1105 5254 5084 21 36 0 0 chrX 107821471 107821499 -54778431 + AT_rich Low_complexity Low_complexity 1 28 0 887 191 88 0 chrX 107822044 107822248 -54777682 + MER58A DNA MER1_type 1 222 -2 477 0 0 0 chrX 107822279 107822332 -54777598 + (CA)n Simple_repeat Simple_repeat 2 54 0 24 53 0 0 chrX 107822887 107822925 -54777005 + AT_rich Low_complexity Low_complexity 1 38 0 2009 147 16 0 chrX 107822973 107823098 -54776832 + AluJo SINE Alu 1 122 -190 210 45 68 0 chrX 107823098 107823142 -54776788 + (CAA)n Simple_repeat Simple_repeat 2 48 0 2009 147 16 0 chrX 107823142 107823322 -54776608 + AluJo SINE Alu 122 311 -1 2266 94 0 10 chrX 107823529 107823852 -54776078 - AluSq SINE Alu 0 320 1 456 193 19 62 chrX 107823935 107824096 -54775834 + L1MC5 LINE L1 7724 7877 -84 1964 62 90 4 chrX 107824219 107824504 -54775426 - AluY SINE Alu 0 312 6 1788 170 11 3 chrX 107824616 107824929 -54775001 + AluJo SINE Alu 6 320 0 1820 166 0 41 chrX 107824933 107825058 -54774872 + AluJb SINE Alu 1 130 -182 2310 109 0 0 chrX 107825058 107825360 -54774570 - AluSx SINE Alu -10 302 1 1820 166 0 41 chrX 107825360 107825548 -54774382 + AluJb SINE Alu 130 301 -11 961 191 0 0 chrX 107825548 107825721 -54774209 + AluJb SINE Alu 134 306 -6 590 267 137 62 chrX 107825911 107826488 -54773442 + L1MC4a LINE L1 5255 5874 -1934 21 0 0 0 chrX 107826683 107826704 -54773226 + AT_rich Low_complexity Low_complexity 1 21 0 421 270 38 33 chrX 107826958 107827169 -54772761 - L1ME4a LINE L1 -58 6063 5852 2381 103 0 0 chrX 107828228 107828540 -54771390 - AluSx SINE Alu 0 312 1 2009 111 20 34 chrX 107829654 107829952 -54769978 - AluSx SINE Alu -18 294 1 2289 91 3 25 chrX 107829966 107830285 -54769645 - AluSp SINE Alu 0 313 2 1743 186 23 3 chrX 107831211 107831517 -54768413 - AluJb SINE Alu 0 312 1 1219 122 0 35 chrX 107832024 107832221 -54767709 + MER30B DNA MER1_type 1 190 0 2192 108 0 3 chrX 107832468 107832765 -54767165 - AluSq SINE Alu -5 308 13 1854 127 69 4 chrX 107834357 107834633 -54765297 - AluSx SINE Alu -18 294 1 556 196 190 16 chrX 107834639 107834823 -54765107 - L1MD3 LINE L1 -26 7969 7754 555 119 0 12 chrX 107834938 107835022 -54764908 - AluJ/FLAM SINE Alu -224 88 6 5520 99 21 48 chrX 107835109 107836062 -54763868 - Tigger3(Golem) DNA MER2_type -1 3028 2102 580 140 56 0 chrX 107836085 107836192 -54763738 - Tigger3(Golem) DNA MER2_type -2916 113 1 235 214 0 48 chrX 107836377 107836461 -54763469 - MER116 DNA Mariner 0 80 1 428 228 9 0 chrX 107836889 107837003 -54762927 + CT-rich Low_complexity Low_complexity 2 116 0 1556 180 44 0 chrX 107837003 107837297 -54762633 - AluJb SINE Alu -5 307 1 1784 164 0 10 chrX 107837590 107837882 -54762048 + AluJo SINE Alu 1 289 -23 784 308 76 43 chrX 107838049 107838445 -54761485 - L2 LINE L2 -5 3267 2859 612 260 36 36 chrX 107838440 107838636 -54761294 - MIR SINE MIR -65 197 2 * 1591 181 13 32 chrX 107838979 107839294 -54760636 + AluJo SINE Alu 1 309 -3 2170 85 7 0 chrX 107839862 107840165 -54759765 - AluSp SINE Alu 0 305 1 1427 126 35 9 chrX 107841073 107841303 -54758627 - MER46A DNA MER2_type 0 236 1 236 184 104 88 chrX 107841667 107841748 -54758182 - L1ME4a LINE L1 -11 6110 6025 2025 137 0 3 chrX 107841748 107842041 -54757889 + AluJb SINE Alu 5 296 -16 236 184 104 88 chrX 107842041 107842084 -54757846 - L1ME4a LINE L1 -96 6025 5984 258 277 94 25 chrX 107842199 107842358 -54757572 - L1ME4a LINE L1 -304 5817 5648 672 161 34 0 chrX 107842358 107842476 -54757454 + MER1B DNA MER1_type 2 123 -174 270 298 67 45 chrX 107842505 107842683 -54757247 - L1ME4a LINE L1 -465 5656 5475 2287 80 3 7 chrX 107843993 107844280 -54755650 + AluSp SINE Alu 1 286 -27 2096 189 33 33 chrX 107844864 107845027 -54754903 - L1MA10 LINE L1 0 6334 6172 198 0 0 0 chrX 107845027 107845049 -54754881 + (TG)n Simple_repeat Simple_repeat 1 22 0 2096 189 33 33 chrX 107845049 107845372 -54754558 - L1MA10 LINE L1 -161 6173 5848 321 298 136 39 chrX 107845938 107846058 -54753872 + L1ME LINE L1 5259 5366 -818 2052 106 60 0 chrX 107846058 107846340 -54753590 - AluSx SINE Alu -13 299 1 321 298 136 39 chrX 107846340 107846528 -54753402 + L1ME LINE L1 5366 5597 -587 439 238 16 8 chrX 107846528 107846650 -54753280 - L1MD3 LINE L1 -24 7971 7849 * 3065 190 47 48 chrX 107846646 107847460 -54752470 - L1MC4a LINE L1 -354 7454 6642 268 226 12 24 chrX 107847586 107847670 -54752260 + L1ME LINE L1 5713 5795 -367 1921 90 0 53 chrX 107847747 107848069 -54751861 - AluSq SINE Alu -3 310 6 21 0 0 0 chrX 107848079 107848100 -54751830 + AT_rich Low_complexity Low_complexity 1 21 0 739 248 154 5 chrX 107851651 107851865 -54748065 + MIR SINE MIR 17 262 0 5768 234 127 29 chrX 107852349 107854468 -54745462 - L2 LINE L2 0 3313 1003 268 243 27 40 chrX 107854472 107854546 -54745384 - MIR SINE MIR -79 183 111 2742 65 3 0 chrX 107854547 107854899 -54745031 - L1PA7 LINE L1 0 6154 5802 363 78 0 0 chrX 107855478 107855529 -54744401 + (TG)n Simple_repeat Simple_repeat 2 52 0 528 231 98 13 chrX 107855788 107856013 -54743917 + MER20B DNA MER1_type 540 783 0 218 170 43 0 chrX 107856294 107856341 -54743589 - MIR3 SINE MIR -9 199 151 371 174 109 33 chrX 107856524 107856616 -54743314 - MIR SINE MIR -90 118 20 1923 165 0 9 chrX 107856889 107857204 -54742726 + AluJb SINE Alu 1 312 0 246 308 77 59 chrX 107857383 107857604 -54742326 + L2 LINE L2 2866 3090 -182 205 28 0 56 chrX 107858546 107858582 -54741348 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 180 217 65 22 chrX 107860082 107860128 -54739802 + L2 LINE L2 3220 3267 -5 778 188 120 57 chrX 107862008 107862367 -54737563 - LTR40b LTR ERVL 0 462 1 399 319 134 13 chrX 107863081 107863238 -54736692 + MER5B DNA MER1_type 1 176 -2 246 160 60 0 chrX 107863239 107863289 -54736641 - MIR3 SINE MIR -48 160 108 1491 207 0 0 chrX 107863475 107863736 -54736194 - AluJo SINE Alu -51 261 1 27 22 0 22 chrX 107864479 107864496 -54735434 + AT_rich Low_complexity Low_complexity 1 17 -27 2062 107 45 7 chrX 107864496 107864787 -54735143 - AluSx SINE Alu -10 302 1 27 22 0 22 chrX 107864787 107864814 -54735116 + AT_rich Low_complexity Low_complexity 17 44 0 760 214 59 0 chrX 107864972 107865022 -54734908 - MER3 DNA MER1_type -2 207 161 2527 37 0 10 chrX 107865022 107865319 -54734611 + AluY SINE Alu 1 294 -17 760 214 59 0 chrX 107865319 107865455 -54734475 - MER3 DNA MER1_type -48 161 10 391 226 7 96 chrX 107866043 107866189 -54733741 - L1ME3 LINE L1 -30 6132 6000 261 304 0 49 chrX 107868173 107868275 -54731655 - MIR3 SINE MIR -25 183 87 451 273 153 79 chrX 107868841 107869057 -54730873 - MIR SINE MIR -21 241 10 661 304 73 58 chrX 107869215 107869596 -54730334 + LTR33 LTR ERVL 34 420 -101 10185 60 6 80 chrX 107870187 107871683 -54728247 - SVA Other Other 0 1386 1 2402 81 0 0 chrX 107871684 107871979 -54727951 - AluSg SINE Alu -15 295 1 2355 77 3 0 chrX 107872592 107872889 -54727041 + AluY SINE Alu 1 298 -13 21 36 0 0 chrX 107873463 107873491 -54726439 + AT_rich Low_complexity Low_complexity 1 28 0 2353 82 17 3 chrX 107874377 107874670 -54725260 - AluSq SINE Alu -16 297 1 810 239 96 0 chrX 107874874 107875071 -54724859 - MER20B DNA MER1_type -3 216 1 2258 113 0 0 chrX 107875358 107875651 -54724279 - AluSx SINE Alu -19 293 1 943 230 14 19 chrX 107876284 107876497 -54723433 - MIR SINE MIR 0 262 51 570 253 68 14 chrX 107879180 107879326 -54720604 + MIR SINE MIR 88 241 -21 300 244 193 8 chrX 107880196 107880315 -54719615 - MIR SINE MIR -94 168 28 21 57 0 0 chrX 107880325 107880360 -54719570 + AT_rich Low_complexity Low_complexity 1 35 0 435 33 0 33 chrX 107880458 107880519 -54719411 - MADE1 DNA Mariner -21 59 1 192 320 60 30 chrX 107880992 107881092 -54718838 - MIR SINE MIR -113 149 47 4662 196 18 7 chrX 107881181 107882317 -54717613 - L1MB2 LINE L1 -3 6168 5016 324 95 238 0 chrX 107882317 107882380 -54717550 - MADE1 DNA Mariner -2 78 1 4662 196 18 7 chrX 107882380 107882631 -54717299 - L1MB2 LINE L1 -1155 5016 4769 264 339 0 9 chrX 107883066 107883178 -54716752 - L3 LINE CR1 -12 1565 1455 885 327 120 38 chrX 107883366 107884217 -54715713 - L2 LINE L2 -36 3236 2262 7086 35 0 3 chrX 107884217 107885066 -54714864 + L1PA5 LINE L1 5306 6151 -3 885 327 120 38 chrX 107885066 107885389 -54714541 - L2 LINE L2 -1010 2262 1967 4011 245 128 43 chrX 107885543 107887771 -54712159 - HAL1 LINE L1 0 2507 92 268 211 0 0 chrX 107888229 107888281 -54711649 - L1ME LINE L1 -456 5665 5614 23 33 0 0 chrX 107888281 107888311 -54711619 + AT_rich Low_complexity Low_complexity 1 30 0 6514 24 0 6 chrX 107888311 107889108 -54710822 - L1PA3 LINE L1 0 6155 5364 234 289 26 53 chrX 107889106 107889220 -54710710 - L1ME LINE L1 -503 5618 5508 * 325 231 231 39 chrX 107891419 107891575 -54708355 - L2 LINE L2 -51 3262 3077 40471 36 22 2 chrX 107891591 107897617 -54702313 - L1PA3 LINE L1 0 6155 1 341 328 120 0 chrX 107897631 107897756 -54702174 - L2 LINE L2 -253 3060 2921 195 42 0 0 chrX 107897759 107897783 -54702147 + (TG)n Simple_repeat Simple_repeat 1 24 0 233 288 27 0 chrX 107898007 107898080 -54701850 + CT-rich Low_complexity Low_complexity 3 77 0 207 200 0 0 chrX 107899670 107899705 -54700225 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 622 198 89 32 chrX 107901307 107901464 -54698466 + MIR SINE MIR 59 224 -38 264 233 156 22 chrX 107901602 107901692 -54698238 + MIR SINE MIR 33 134 -74 207 0 0 0 chrX 107901700 107901723 -54698207 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2016 138 0 31 chrX 107901949 107902269 -54697661 - AluJo SINE Alu -2 310 1 242 202 155 0 chrX 107902399 107902483 -54697447 + MER112 DNA MER1_type 122 218 -42 536 232 0 0 chrX 107902491 107902603 -54697327 + MER3 DNA MER1_type 2 113 -96 825 167 0 0 chrX 107902605 107902737 -54697193 + FLAM_C SINE Alu 1 132 -1 505 204 56 31 chrX 107902885 107903047 -54696883 - HAL1 LINE L1 -50 2457 2292 1215 235 208 12 chrX 107903065 107903627 -54696303 - HAL1 LINE L1 -303 2204 1533 5793 45 15 0 chrX 107904172 107904887 -54695043 + L1PA8 LINE L1 5447 6172 0 2241 93 10 0 chrX 107904889 107905179 -54694751 + AluY SINE Alu 1 293 -18 289 173 0 0 chrX 107905512 107905564 -54694366 - MER5B DNA MER1_type 0 178 127 2547 103 13 24 chrX 107905803 107906182 -54693748 - THE1C LTR MaLR 0 375 1 455 304 0 0 chrX 107908086 107908198 -54691732 + L2 LINE L2 3161 3272 0 253 337 0 22 chrX 107908722 107908811 -54691119 + L2 LINE L2 3008 3094 -178 508 244 25 31 chrX 107908841 107908993 -54690937 - MIR SINE MIR -4 258 106 760 29 0 39 chrX 107908993 107909095 -54690835 + L1PA6 LINE L1 6054 6151 -3 394 255 11 0 chrX 107909581 107909675 -54690255 + MIR3 SINE MIR 65 159 -49 799 238 5 16 chrX 107909756 107909949 -54689981 + MIR SINE MIR 51 241 -21 2518 173 50 102 chrX 107910158 107910834 -54689096 + L1ME2 LINE L1 5514 6154 -10 322 237 65 32 chrX 107911209 107911302 -54688628 - L2 LINE L2 -15 3257 3162 197 301 97 11 chrX 107911455 107911548 -54688382 - L2 LINE L2 -495 2819 2719 263 195 171 12 chrX 107911907 107911989 -54687941 + MIR SINE MIR 156 250 -12 310 309 9 55 chrX 107912510 107912620 -54687310 + L2 LINE L2 3155 3259 -13 243 0 0 0 chrX 107912620 107912647 -54687283 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 315 242 33 8 chrX 107913419 107913539 -54686391 + L1ME LINE L1 5696 5818 -303 227 0 0 83 chrX 107913843 107913879 -54686051 + (GA)n Simple_repeat Simple_repeat 1 33 0 638 297 91 31 chrX 107914444 107914895 -54685035 - L2 LINE L2 -1057 2257 1780 273 197 113 0 chrX 107914952 107915023 -54684907 + MIR SINE MIR 99 177 -85 1985 145 33 18 chrX 107915138 107915470 -54684460 - MER1B DNA MER1_type 0 337 1 230 250 0 42 chrX 107916910 107916993 -54682937 + C-rich Low_complexity Low_complexity 1 79 0 2094 118 0 44 chrX 107918959 107919274 -54680656 - AluSx SINE Alu -11 301 1 2030 94 10 37 chrX 107920020 107920318 -54679612 - AluSx SINE Alu -22 290 1 372 319 6 17 chrX 107921362 107921504 -54678426 + MIR SINE MIR 3 137 -71 451 179 0 38 chrX 107922375 107922481 -54677449 - L1MB2 LINE L1 -2 6169 6068 451 236 181 6 chrX 107923939 107924121 -54675809 + MIR SINE MIR 33 246 -16 1963 250 45 43 chrX 107924215 107924950 -54674980 + L2 LINE L2 1653 2388 -926 1540 230 26 55 chrX 107924954 107925371 -54674559 + MER90 LTR ERV1 1 405 -209 1430 264 20 59 chrX 107925392 107926227 -54673703 + L2 LINE L2 2422 3225 -88 22 0 0 0 chrX 107926231 107926253 -54673677 + AT_rich Low_complexity Low_complexity 1 22 0 1534 237 95 7 chrX 107926291 107926742 -54673188 - L1ME2 LINE L1 -10 6154 5664 229 330 37 37 chrX 107927065 107927280 -54672650 + L2 LINE L2 1254 1468 -1846 242 246 0 0 chrX 107927395 107927452 -54672478 - L2 LINE L2 -15 3257 3201 574 262 61 12 chrX 107927559 107927766 -54672164 - MIR SINE MIR -48 214 3 6422 23 0 1 chrX 107927813 107928539 -54671391 - L1PA5 LINE L1 -13 6141 5417 299 213 0 13 chrX 107928736 107928811 -54671119 + MER5A DNA MER1_type 44 117 -72 * 389 300 8 8 chrX 107928804 107928924 -54671006 - L2 LINE L2 -649 2665 2546 519 162 0 57 chrX 107928924 107929029 -54670901 - AluJb SINE Alu -5 307 209 824 117 15 0 chrX 107929034 107929171 -54670759 - L1MB4 LINE L1 0 6180 6042 754 191 0 0 chrX 107929313 107929444 -54670486 - FLAM_A SINE Alu -1 132 2 588 216 260 10 chrX 107929651 107929859 -54670071 - MIR SINE MIR -1 261 2 211 324 115 25 chrX 107929882 107930246 -54669684 - L2 LINE L2 -1141 2173 1777 492 232 145 43 chrX 107930303 107930510 -54669420 + MIR SINE MIR 23 250 -12 352 192 14 0 chrX 107932628 107932701 -54667229 + MER5B DNA MER1_type 76 149 -29 31588 96 9 14 chrX 107932732 107938482 -54661448 - L1PA7 LINE L1 -6 6463 722 280 313 28 7 chrX 107938490 107938634 -54661296 - L2 LINE L2 -1606 1708 1562 198 323 24 24 chrX 107938754 107938918 -54661012 - L2 LINE L2 -1939 1375 1212 239 257 55 83 chrX 107939047 107939156 -54660774 + MIR3 SINE MIR 10 115 -93 343 230 113 26 chrX 107939306 107939533 -54660397 + L1MC/D LINE L1 5219 5471 -743 * 1296 176 67 10 chrX 107939496 107939799 -54660131 - L1MC3 LINE L1 -112 7883 7357 549 267 89 25 chrX 107941126 107941328 -54658602 - MIR SINE MIR 0 262 48 230 177 0 16 chrX 107942076 107942138 -54657792 + T-rich Low_complexity Low_complexity 5 65 0 1420 146 87 4 chrX 107942364 107942772 -54657158 + LTR54 LTR ERV1 8 510 0 348 64 0 0 chrX 107942776 107942823 -54657107 + (CA)n Simple_repeat Simple_repeat 2 48 0 752 301 75 37 chrX 107943155 107944055 -54655875 - L1MC4a LINE L1 -743 5403 5032 1415 158 128 81 chrX 107944348 107944393 -54655537 - L1MA7 LINE L1 0 6291 6250 3065 91 27 23 chrX 107944393 107944835 -54655095 - MLT2A1 LTR ERVL 0 444 1 1415 158 128 81 chrX 107944835 107944850 -54655080 - L1MA7 LINE L1 -41 6250 6237 2292 102 0 0 chrX 107944850 107945144 -54654786 - AluSg SINE Alu -16 294 1 2118 87 72 0 chrX 107945151 107945427 -54654503 - AluSx SINE Alu -16 296 1 1415 158 128 81 chrX 107945427 107945678 -54654252 - L1MA7 LINE L1 -59 6232 5944 270 0 0 0 chrX 107945678 107945708 -54654222 + (TG)n Simple_repeat Simple_repeat 1 30 0 1415 158 128 81 chrX 107945708 107945816 -54654114 - L1MA7 LINE L1 -347 5944 5842 254 283 139 84 chrX 107945926 107946226 -54653704 - L1MC4a LINE L1 -2145 4001 3719 5404 67 0 0 chrX 107946226 107946896 -54653034 + L1PA8 LINE L1 5502 6171 -1 254 283 139 84 chrX 107946896 107947299 -54652631 - L1MC4a LINE L1 -2427 3719 3259 2569 69 3 0 chrX 107947521 107947826 -54652104 - AluSp SINE Alu -7 306 1 190 186 0 34 chrX 107948478 107948537 -54651393 + CT-rich Low_complexity Low_complexity 2 58 0 210 221 88 15 chrX 107949744 107949812 -54650118 - L2 LINE L2 -1056 2258 2186 923 223 11 11 chrX 107950062 107950250 -54649680 - MER5A DNA MER1_type -1 188 1 256 200 31 0 chrX 107951476 107951541 -54648389 - L1ME4a LINE L1 -93 6028 5962 1465 237 37 22 chrX 107952824 107953234 -54646696 + MER20B DNA MER1_type 221 636 -147 2369 119 8 3 chrX 107953331 107953684 -54646246 - THE1A LTR MaLR 0 355 1 1957 261 72 42 chrX 107953833 107955309 -54644621 - L1ME4a LINE L1 -233 5929 4413 6337 179 143 32 chrX 107955309 107956812 -54643118 + MER52A LTR ERV1 1 1755 0 1272 268 28 73 chrX 107956812 107957088 -54642842 - L1ME4a LINE L1 -1730 4416 4129 2108 128 13 3 chrX 107957088 107957392 -54642538 - AluSx SINE Alu -5 307 1 1272 268 28 73 chrX 107957392 107958072 -54641858 - L1ME4a LINE L1 -2017 4129 3503 240 255 0 21 chrX 107958121 107958215 -54641715 - L1MC4 LINE L1 -1337 6705 6614 446 226 20 0 chrX 107958229 107958331 -54641599 - L1ME3A LINE L1 -8 6162 6059 210 71 0 0 chrX 107958908 107958936 -54640994 + (CA)n Simple_repeat Simple_repeat 2 29 0 1827 201 38 5 chrX 107959043 107959461 -54640469 - L1ME3A LINE L1 -356 5828 5397 316 292 83 8 chrX 107959463 107959583 -54640347 - L1ME4a LINE L1 -3245 2901 2773 920 300 29 17 chrX 107959637 107960154 -54639776 - L1ME4a LINE L1 -3487 2659 2137 493 191 0 0 chrX 107960488 107960582 -54639348 + AluJ/FRAM SINE Alu 217 310 -2 512 219 29 9 chrX 107960674 107960779 -54639151 + MER5B DNA MER1_type 72 178 0 681 272 61 38 chrX 107961212 107961517 -54638413 + L1MEc LINE L1 1398 1715 -4681 2139 114 17 0 chrX 107961517 107961814 -54638116 + AluSx SINE Alu 1 302 -10 681 272 61 38 chrX 107961814 107961902 -54638028 + L1MEc LINE L1 1715 1800 -4596 518 193 108 121 chrX 107962095 107962318 -54637612 - MLT1J LTR MaLR -291 220 1 1111 279 66 43 chrX 107963614 107963974 -54635956 - L2 LINE L2 -135 3178 2796 2931 165 28 18 chrX 107963974 107964484 -54635446 + MLT2B2 LTR ERVL 1 515 0 1111 279 66 43 chrX 107964484 107964734 -54635196 - L2 LINE L2 -517 2796 2553 2657 226 38 9 chrX 107964737 107965371 -54634559 + MER82 DNA MER2_type 2 653 0 799 279 93 7 chrX 107965378 107965668 -54634262 - L2 LINE L2 -770 2544 2230 645 181 6 38 chrX 107965671 107965831 -54634099 - LTR7 LTR ERV1 0 450 296 842 115 0 14 chrX 107966089 107966228 -54633702 - LTR7 LTR ERV1 -313 137 1 1559 158 104 65 chrX 107966241 107966653 -54633277 - MSTB1 LTR MaLR -4 428 1 4951 250 43 55 chrX 107966653 107966802 -54633128 - MSTB1-int LTR MaLR 0 1651 1502 840 165 0 0 chrX 107966802 107966929 -54633001 + FLAM_C SINE Alu 1 127 -6 4951 250 43 55 chrX 107966929 107968449 -54631481 - MSTB1-int LTR MaLR -149 1502 1 1127 171 25 25 chrX 107968451 107968696 -54631234 - MSTB1 LTR MaLR -2 430 186 2299 104 0 0 chrX 107969503 107969802 -54630128 + AluSq SINE Alu 1 299 -14 626 221 168 26 chrX 107970236 107970462 -54629468 - LTR48 LTR ERV1 -526 261 4 411 256 0 0 chrX 107970567 107970657 -54629273 - LTR48-int LTR ERV1 -164 6167 6078 2286 50 4 0 chrX 107970677 107970989 -54628941 + AluY SINE Alu 1 313 0 487 257 46 33 chrX 107971011 107971163 -54628767 - LTR49-int LTR ERV1 -242 4694 4541 * 2258 133 29 5 chrX 107971159 107971544 -54628386 - LTR49-int LTR ERV1 -541 5790 5397 21 0 0 0 chrX 107971568 107971589 -54628341 + AT_rich Low_complexity Low_complexity 1 21 0 5546 206 59 80 chrX 107974077 107974198 -54625732 - LTR49-int LTR ERV1 -923 5408 5286 2011 145 7 13 chrX 107974198 107974501 -54625429 - AluJb SINE Alu -11 301 1 5546 206 59 80 chrX 107974501 107975442 -54624488 - LTR49-int LTR ERV1 -1045 5286 4326 1668 117 13 4 chrX 107975442 107975681 -54624249 - AluSx SINE Alu -13 299 59 5546 206 59 80 chrX 107975681 107978804 -54621126 - LTR49-int LTR ERV1 -2005 4326 751 1158 133 35 133 chrX 107978949 107979094 -54620836 - LTR49-int LTR ERV1 -3264 1616 1458 407 181 28 0 chrX 107979094 107979166 -54620764 - tRNA-Glu-GAG tRNA tRNA 0 75 2 1158 133 35 133 chrX 107979166 107979539 -54620391 - LTR49-int LTR ERV1 -3422 1458 842 758 147 46 86 chrX 107980689 107980886 -54619044 - MSTB1 LTR MaLR -243 189 1 343 282 25 106 chrX 107981182 107981427 -54618503 + L1ME LINE L1 4945 5169 -977 331 85 68 0 chrX 107981432 107981491 -54618439 - MLT2B1 LTR ERVL 0 520 458 304 54 95 0 chrX 107981491 107981565 -54618365 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 1692 196 249 5 chrX 107981565 107981994 -54617936 - MLT2B1 LTR ERVL -20 534 1 230 255 68 21 chrX 107981999 107982191 -54617739 + L1ME LINE L1 5174 5374 -772 1730 259 118 18 chrX 107982216 107983107 -54616823 - L2 LINE L2 0 3313 2338 690 288 97 8 chrX 107983275 107983646 -54616284 + L1ME LINE L1 5401 5804 -317 216 220 40 0 chrX 107983679 107983729 -54616201 - MIR SINE MIR -27 235 184 229 167 83 0 chrX 107983770 107983818 -54616112 - L2 LINE L2 0 3313 3262 590 346 62 27 chrX 107984572 107985046 -54614884 - LTR16B LTR ERVL -3 461 1 324 287 23 0 chrX 107985380 107985467 -54614463 - L1MC4 LINE L1 -1339 6703 6615 329 231 22 44 chrX 107985469 107985560 -54614370 - L1MC4 LINE L1 -1340 6702 6614 578 246 81 1 chrX 107985682 107985826 -54614104 + MIR SINE MIR 31 182 -65 451 250 35 9 chrX 107985826 107985942 -54613988 - MIR SINE MIR -113 149 31 3890 94 20 2 chrX 107986311 107986855 -54613075 - MER41A LTR ERV1 0 554 1 12819 78 16 22 chrX 107986855 107989170 -54610760 - MER41A-int LTR ERV1 0 5946 2856 2573 76 48 20 chrX 107989157 107989550 -54610380 - MER41A-int LTR ERV1 -3000 2946 2543 * 1608 117 12 4 chrX 107989540 107989789 -54610141 - MER41A-int LTR ERV1 -4506 3031 2781 * 719 124 0 116 chrX 107989785 107989959 -54609971 - MER41A-int LTR ERV1 -4193 3225 2484 * 890 183 16 11 chrX 107989963 107990149 -54609781 - MER41A-int LTR ERV1 -4381 836 650 4253 114 28 5 chrX 107990150 107990824 -54609106 - MER41A-int LTR ERV1 -5256 690 1 3848 93 11 14 chrX 107990824 107991380 -54608550 - MER41A LTR ERV1 0 554 1 2324 68 3 0 chrX 107992055 107992347 -54607583 + AluY SINE Alu 1 293 -18 410 286 77 24 chrX 107992817 107992985 -54606945 - MIR SINE MIR -39 223 47 653 249 46 21 chrX 107993511 107993665 -54606265 - MER112 DNA MER1_type -8 252 88 333 47 0 0 chrX 107993665 107993708 -54606222 + (CA)n Simple_repeat Simple_repeat 2 44 0 653 249 46 21 chrX 107993708 107993794 -54606136 - MER112 DNA MER1_type -172 88 6 592 194 58 7 chrX 107994578 107994733 -54605197 - MER104 DNA Tc2 -16 164 2 1406 198 56 4 chrX 107994772 107995040 -54604890 - AluJo SINE Alu -30 282 1 7017 50 18 26 chrX 107995099 107996809 -54603121 - L1PA6 LINE L1 -1 6153 4450 2670 44 0 28 chrX 107996829 107997217 -54602713 - L1PA6 LINE L1 -2885 3261 2885 654 198 0 9 chrX 108001362 108001478 -54598452 - FLAM_A SINE Alu -18 115 1 2335 101 0 0 chrX 108001661 108001968 -54597962 + AluSg SINE Alu 4 310 0 6941 47 15 3 chrX 108002165 108003409 -54596521 + L1PA7 LINE L1 4866 6150 -4 225 269 202 19 chrX 108003902 108004006 -54595924 - MIR SINE MIR -136 126 4 270 0 0 0 chrX 108004694 108004724 -54595206 + (CA)n Simple_repeat Simple_repeat 2 31 0 490 223 234 32 chrX 108006009 108006197 -54593733 - MIR SINE MIR 0 262 37 274 336 34 46 chrX 108006555 108006793 -54593137 + L2 LINE L2 2205 2439 -875 507 346 0 0 chrX 108006807 108006940 -54592990 - L2 LINE L2 -4 3268 3136 238 106 43 0 chrX 108007011 108007058 -54592872 + CT-rich Low_complexity Low_complexity 2 50 0 1032 123 0 35 chrX 108007058 108007228 -54592702 - AluSg/x SINE Alu -15 297 134 228 268 21 0 chrX 108007228 108007376 -54592554 + CT-rich Low_complexity Low_complexity 1 151 0 482 266 106 16 chrX 108007582 108007770 -54592160 - MIR SINE MIR -52 210 6 227 323 0 0 chrX 108007813 108007878 -54592052 + L2 LINE L2 2993 3057 -215 670 309 46 0 chrX 108008303 108008497 -54591433 + MIR SINE MIR 1 203 -59 4434 157 72 8 chrX 108008912 108009836 -54590094 - L1MB7 LINE L1 -1 6183 5197 699 281 13 34 chrX 108009836 108010071 -54589859 - L1M4 LINE L1 -6297 245 16 455 190 11 0 chrX 108010106 108010203 -54589727 - L1M1 LINE L1 -566 5736 5634 * 2328 210 18 39 chrX 108010166 108010277 -54589653 + L1MA9 LINE L1 5675 5787 -525 225 0 0 0 chrX 108010277 108010302 -54589628 + (TG)n Simple_repeat Simple_repeat 2 26 0 2328 210 18 39 chrX 108010302 108010803 -54589127 + L1MA9 LINE L1 5787 6274 -38 383 231 92 23 chrX 108011644 108011817 -54588113 - L1M4 LINE L1 -3786 2360 2176 * 1371 202 52 93 chrX 108011812 108012106 -54587824 - L1ME3 LINE L1 0 6096 5826 1083 110 57 57 chrX 108012106 108012269 -54587661 - L1MA7 LINE L1 0 6291 6126 2168 101 0 52 chrX 108012269 108012577 -54587353 + AluSx SINE Alu 1 292 -20 1083 110 57 57 chrX 108012577 108012640 -54587290 - L1MA7 LINE L1 -164 6127 6065 1371 202 52 93 chrX 108012640 108012805 -54587125 - L1ME3 LINE L1 -270 5826 5656 1006 218 81 13 chrX 108012805 108013039 -54586891 - AluJo SINE Alu -14 298 49 1360 237 58 20 chrX 108013065 108013458 -54586472 - L1ME3 LINE L1 -465 5639 5232 423 120 11 22 chrX 108013545 108013637 -54586293 + (TA)n Simple_repeat Simple_repeat 2 92 0 3618 252 77 39 chrX 108013638 108014488 -54585442 - L1ME3 LINE L1 -905 5175 4359 1525 160 11 15 chrX 108014488 108014751 -54585179 - AluJo SINE Alu -36 276 15 3618 252 77 39 chrX 108014751 108014833 -54585097 - L1ME3 LINE L1 -1721 4359 4282 1642 191 3 33 chrX 108014833 108015136 -54584794 - AluJo SINE Alu -18 294 1 3618 252 77 39 chrX 108015136 108015760 -54584170 - L1ME3 LINE L1 -1798 4282 3559 877 293 88 30 chrX 108015748 108016508 -54583422 - L1ME3 LINE L1 -3948 2313 1510 * 248 51 0 26 chrX 108016509 108016548 -54583382 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 37128 33 2 0 chrX 108016548 108021808 -54578122 - L1PA3 LINE L1 -24 6131 865 2386 195 40 0 chrX 108021811 108022313 -54577617 - L1MB5 LINE L1 -8 6166 5645 856 210 28 9 chrX 108022313 108022527 -54577403 - L1MB5 LINE L1 -2443 3703 3486 13298 152 22 19 chrX 108022612 108024379 -54575551 - L1MA1 LINE L1 0 6302 4541 1894 174 0 3 chrX 108024379 108024690 -54575240 + AluJb SINE Alu 1 310 -2 13298 152 22 19 chrX 108024690 108025137 -54574793 - L1MA1 LINE L1 -1761 4541 4097 2218 117 0 0 chrX 108025137 108025436 -54574494 - AluSg1 SINE Alu -10 299 1 13298 152 22 19 chrX 108025436 108026945 -54572985 - L1MA1 LINE L1 -2205 4097 2569 1017 124 0 13 chrX 108026949 108027102 -54572828 - AluSq/x SINE Alu -161 151 1 602 283 66 37 chrX 108027154 108027586 -54572344 - L1ME3 LINE L1 -4810 1451 957 2453 155 11 20 chrX 108027586 108028024 -54571906 + Tigger2a DNA MER2_type 1 434 0 602 283 66 37 chrX 108028024 108028096 -54571834 - L1ME3 LINE L1 -5304 957 889 12436 208 46 30 chrX 108028135 108028172 -54571758 - L1MB2 LINE L1 -7 6400 6365 2096 106 0 7 chrX 108028172 108028454 -54571476 + AluSx SINE Alu 22 301 -11 12436 208 46 30 chrX 108028454 108028802 -54571128 - L1MB2 LINE L1 -42 6365 6024 3983 71 22 4 chrX 108028802 108029162 -54570768 - L1PB1 LINE L1 -1 6150 5775 180 0 0 0 chrX 108029162 108029182 -54570748 + (TA)n Simple_repeat Simple_repeat 2 21 0 3983 71 22 4 chrX 108029182 108029369 -54570561 - L1PB1 LINE L1 -376 5775 5593 12436 208 46 30 chrX 108029369 108033866 -54566064 - L1MB2 LINE L1 -383 6024 1602 462 18 0 0 chrX 108033866 108033921 -54566009 + (TG)n Simple_repeat Simple_repeat 2 56 0 1672 185 7 3 chrX 108033921 108034207 -54565723 - AluJb SINE Alu -25 287 1 12436 208 46 30 chrX 108034207 108034254 -54565676 - L1MB2 LINE L1 -4804 1603 1374 234 275 98 49 chrX 108034282 108034587 -54565343 - L1ME3 LINE L1 -5410 851 532 763 303 0 0 chrX 108034819 108034997 -54564933 + MER63A DNA MER1_type 33 210 0 295 290 24 40 chrX 108035002 108035126 -54564804 - L1ME3 LINE L1 -5626 444 323 233 273 27 45 chrX 108035291 108035401 -54564529 - L1ME3 LINE L1 -5937 133 26 358 246 79 69 chrX 108035421 108035624 -54564306 - L1MEc LINE L1 -4078 2318 2114 21 57 0 0 chrX 108035715 108035750 -54564180 + AT_rich Low_complexity Low_complexity 1 35 0 3332 159 5 35 chrX 108036010 108036088 -54563842 + MER7C DNA MER2_type 1 80 -2948 1751 163 17 20 chrX 108036088 108036389 -54563541 + AluJb SINE Alu 1 300 -12 3332 159 5 35 chrX 108036389 108036931 -54562999 + MER7C DNA MER2_type 80 602 0 1188 355 18 10 chrX 108037090 108037594 -54562336 + HERVL LTR ERVL 1495 2002 -3762 * 2123 317 87 12 chrX 108037592 108038471 -54561459 + HERVL LTR ERVL 2115 3058 -2706 1102 354 30 10 chrX 108038507 108039015 -54560915 + HERVL LTR ERVL 3098 3615 -2039 1149 196 102 92 chrX 108039015 108039407 -54560523 + MSTD LTR MaLR 1 396 0 5065 214 18 46 chrX 108039407 108040570 -54559360 + MSTD-int LTR MaLR 1 1067 -513 1417 135 17 127 chrX 108040573 108040935 -54558995 + LTR39 LTR ERV1 1 322 -461 944 195 15 31 chrX 108040982 108041177 -54558753 + LTR39 LTR ERV1 592 783 0 2842 209 49 6 chrX 108041178 108041713 -54558217 + MSTD-int LTR MaLR 1178 1735 0 695 213 0 16 chrX 108041727 108041854 -54558076 - FLAM_A SINE Alu -17 125 1 890 201 68 131 chrX 108041855 108042032 -54557898 + MSTD LTR MaLR 11 198 -198 1674 177 3 3 chrX 108042032 108042315 -54557615 + AluJb SINE Alu 7 289 -23 890 201 68 131 chrX 108042315 108042549 -54557381 + MSTD LTR MaLR 198 396 0 1856 279 43 21 chrX 108042767 108043326 -54556604 + HERVL LTR ERVL 3910 4480 -1284 5633 175 20 15 chrX 108043380 108043838 -54556092 + L1M1 LINE L1 22 476 -7089 3006 93 55 0 chrX 108043838 108043874 -54556056 - MLT2A1 LTR ERVL 0 444 411 219 36 0 0 chrX 108043874 108043902 -54556028 + (TA)n Simple_repeat Simple_repeat 2 29 0 3006 93 55 0 chrX 108043902 108044286 -54555644 - MLT2A1 LTR ERVL -33 411 1 5633 175 20 15 chrX 108044286 108044803 -54555127 + L1M1 LINE L1 476 1002 -6563 6993 128 7 21 chrX 108044850 108046538 -54553392 + L1MA2 LINE L1 4639 6304 0 1513 229 53 25 chrX 108046539 108046932 -54552998 + MLT2D LTR ERVL 11 414 0 715 301 62 46 chrX 108046933 108047552 -54552378 + HERVL LTR ERVL 4461 5101 -384 1165 289 80 48 chrX 108048000 108048498 -54551432 + LTR33 LTR ERVL 1 514 -7 268 311 115 33 chrX 108048530 108048774 -54551156 + L2 LINE L2 2148 2411 -903 238 264 46 58 chrX 108048993 108049080 -54550850 + MIR SINE MIR 1 86 -176 630 262 98 51 chrX 108049082 108049338 -54550592 - L2 LINE L2 0 3313 3046 278 306 0 0 chrX 108049336 108049408 -54550522 - L2 LINE L2 -1143 2171 2100 * 995 255 12 16 chrX 108049407 108049662 -54550268 - MIR SINE MIR 0 262 9 478 305 18 6 chrX 108049719 108049883 -54550047 + MIR SINE MIR 97 262 0 973 262 4 9 chrX 108050066 108050291 -54549639 - MER58A DNA MER1_type 0 224 1 940 214 270 17 chrX 108050519 108050878 -54549052 + MLT1J2 LTR MaLR 1 450 0 1796 139 70 25 chrX 108051019 108051378 -54548552 - THE1C LTR MaLR 0 375 1 7719 20 2 1 chrX 108051621 108052520 -54547410 + L1PA3 LINE L1 5256 6155 0 243 0 0 0 chrX 108052548 108052575 -54547355 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 325 218 9 21 chrX 108052602 108052719 -54547211 - L1ME LINE L1 -5171 899 795 289 203 0 16 chrX 108053802 108053866 -54546064 - LTR33A LTR ERVL 0 523 461 631 301 34 17 chrX 108053982 108054252 -54545678 - L1P3 LINE L1 -316 5805 5547 896 296 45 40 chrX 108054864 108055358 -54544572 + L1ME LINE L1 5329 5824 -297 538 274 82 23 chrX 108055862 108056081 -54543849 - MIR SINE MIR -12 250 19 707 303 64 24 chrX 108056577 108056828 -54543102 + MIR SINE MIR 2 262 0 973 235 10 0 chrX 108057880 108058084 -54541846 + MIR SINE MIR 13 218 -44 576 289 157 5 chrX 108058545 108058742 -54541188 + MIR SINE MIR 33 259 -3 291 305 30 30 chrX 108058740 108058871 -54541059 + MIR SINE MIR 100 230 -32 * 2298 132 94 136 chrX 108058875 108059619 -54540311 + L1MB7 LINE L1 5472 6184 0 974 108 5 32 chrX 108061182 108061367 -54538563 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 378 261 0 11 chrX 108062215 108062303 -54537627 - L2 LINE L2 -4 3309 3223 403 290 91 17 chrX 108062735 108062911 -54537019 - MIR3 SINE MIR 0 208 20 199 307 228 0 chrX 108062923 108063037 -54536893 - MIR SINE MIR -3 259 120 730 223 69 73 chrX 108063428 108063661 -54536269 + MIR SINE MIR 23 254 -8 830 312 67 86 chrX 108064624 108065297 -54534633 + L2 LINE L2 2082 2741 -573 405 238 0 0 chrX 108065403 108065504 -54534426 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 474 18 0 0 chrX 108065505 108065560 -54534370 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 261 223 64 181 chrX 108065563 108065828 -54534102 + L2 LINE L2 2925 3158 -114 353 203 38 13 chrX 108065897 108065976 -54533954 - MIR SINE MIR -34 228 148 227 285 48 59 chrX 108065975 108066161 -54533769 - L2 LINE L2 -784 2530 2347 * 583 266 12 6 chrX 108068696 108068869 -54531061 - MER5B DNA MER1_type -4 174 1 514 315 16 0 chrX 108070679 108070806 -54529124 + MER91A DNA MER1_type 1 129 -67 711 324 5 14 chrX 108071250 108071472 -54528458 - MIR SINE MIR -2 260 41 1051 172 10 26 chrX 108071476 108071668 -54528262 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chrX 108072945 108072973 -54526957 + AT_rich Low_complexity Low_complexity 1 28 0 205 235 0 73 chrX 108073556 108073624 -54526306 + MIR3 SINE MIR 125 187 -21 308 325 162 32 chrX 108073895 108074049 -54525881 - L2 LINE L2 -3 3269 3096 1004 283 20 10 chrX 108074083 108074376 -54525554 - LTR16A LTR ERVL 0 450 155 502 269 31 0 chrX 108074377 108074507 -54525423 + MER63 DNA MER1_type 1 760 -76 247 308 68 27 chrX 108074565 108074711 -54525219 - LTR16A LTR ERVL -288 162 11 358 254 102 51 chrX 108075140 108075317 -54524613 - MARNA DNA Mariner -347 239 54 1243 156 4 50 chrX 108075935 108076173 -54523757 + MER46A DNA MER2_type 10 236 0 367 289 179 0 chrX 108076359 108076532 -54523398 - MIR SINE MIR -1 261 58 248 333 8 16 chrX 108077978 108078104 -54521826 + GA-rich Low_complexity Low_complexity 3 127 0 1072 260 153 43 chrX 108078308 108078547 -54521383 - MLT1L LTR MaLR -94 521 310 2583 46 0 0 chrX 108078547 108078850 -54521080 + AluY SINE Alu 1 303 -8 1072 260 153 43 chrX 108078850 108079075 -54520855 - MLT1L LTR MaLR -305 310 6 183 80 0 0 chrX 108079315 108079340 -54520590 + (CA)n Simple_repeat Simple_repeat 2 26 0 210 191 0 0 chrX 108079547 108079589 -54520341 + (TG)n Simple_repeat Simple_repeat 2 43 0 555 291 30 0 chrX 108079986 108080151 -54519779 + MIR SINE MIR 64 233 -29 463 275 12 88 chrX 108080394 108080483 -54519447 - L2 LINE L2 -10 3303 3230 866 239 61 0 chrX 108080483 108080680 -54519250 - MER63A DNA MER1_type 0 210 2 463 275 12 88 chrX 108080680 108080750 -54519180 - L2 LINE L2 -83 3230 3156 3595 262 127 41 chrX 108080902 108083037 -54516893 - HAL1 LINE L1 -9 2498 179 692 209 74 6 chrX 108083377 108083540 -54516390 + MIR SINE MIR 89 262 0 202 274 96 27 chrX 108083566 108083639 -54516291 - L2 LINE L2 -33 3280 3203 744 227 130 5 chrX 108083814 108084021 -54515909 - MIR SINE MIR -16 246 14 191 358 28 28 chrX 108086199 108086308 -54513622 + MIR3 SINE MIR 3 111 -97 * 1378 220 53 37 chrX 108086293 108086648 -54513282 - L2 LINE L2 -860 2454 2094 209 260 0 0 chrX 108086720 108086770 -54513160 - L3 LINE CR1 -7 1570 1521 446 296 113 0 chrX 108086781 108086940 -54512990 + MIR3 SINE MIR 32 208 0 245 226 0 65 chrX 108086935 108086997 -54512933 - MIR SINE MIR -114 148 91 * 519 277 25 6 chrX 108087058 108087217 -54512713 - MER5B DNA MER1_type -11 167 6 234 292 0 0 chrX 108087812 108087877 -54512053 + (TG)n Simple_repeat Simple_repeat 2 66 0 186 213 127 113 chrX 108089263 108089413 -54510517 + L2 LINE L2 3159 3310 -3 417 265 10 0 chrX 108090694 108090796 -54509134 + MIR SINE MIR 148 250 -12 622 254 0 0 chrX 108091308 108091430 -54508500 + MIR3 SINE MIR 73 194 -14 607 268 22 70 chrX 108092554 108092782 -54507148 - MIR SINE MIR -43 219 3 232 296 70 70 chrX 108093570 108093742 -54506188 + MIR SINE MIR 18 189 -73 896 148 51 90 chrX 108094238 108094494 -54505436 + MER33 DNA MER1_type 1 246 -78 11226 52 0 0 chrX 108094499 108096672 -54503258 - L1PA5 LINE L1 -3 6151 3978 546 15 0 0 chrX 108096672 108096737 -54503193 + L1P LINE L1 3754 3818 -2328 401 184 23 11 chrX 108096737 108096824 -54503106 + MER33 DNA MER1_type 235 322 -2 195 296 19 0 chrX 108096967 108097021 -54502909 + L2 LINE L2 3213 3267 -5 651 238 128 69 chrX 108097345 108097635 -54502295 + MER102a DNA MER1_type 4 310 -20 31 44 0 0 chrX 108098961 108099006 -54500924 + AT_rich Low_complexity Low_complexity 1 45 0 264 284 299 8 chrX 108099786 108099920 -54500010 + MIR3 SINE MIR 9 181 -27 1156 184 17 111 chrX 108101838 108102197 -54497733 + MLT1A1 LTR MaLR 1 325 -40 6226 196 16 90 chrX 108102214 108103868 -54496062 + MLT1A1-int LTR MaLR 1 1531 -204 745 205 38 129 chrX 108103869 108104210 -54495720 + MLT1A2 LTR MaLR 60 369 -5 192 163 116 0 chrX 108104494 108104537 -54495393 + MIR3 SINE MIR 119 166 -42 * 692 211 60 18 chrX 108104531 108104697 -54495233 - MER5B DNA MER1_type -5 173 1 214 271 17 0 chrX 108104697 108104752 -54495178 + MIR3 SINE MIR 153 208 0 192 213 0 0 chrX 108105273 108105334 -54494596 + T-rich Low_complexity Low_complexity 1 61 0 7339 31 0 0 chrX 108105335 108106237 -54493693 - L1PA3 LINE L1 0 6155 5254 12056 24 0 0 chrX 108106248 108107729 -54492201 + L1PA3 LINE L1 3745 5225 -921 245 276 16 39 chrX 108108130 108108257 -54491673 + CT-rich Low_complexity Low_complexity 2 125 0 343 326 62 0 chrX 108108358 108108487 -54491443 - MIR3 SINE MIR -37 171 35 574 321 11 5 chrX 108108814 108108998 -54490932 + MIR3 SINE MIR 15 199 -9 239 168 19 178 chrX 108109121 108109228 -54490702 + MER91C DNA MER1_type 1 90 -50 269 178 0 0 chrX 108109708 108109753 -54490177 + MER91C DNA MER1_type 146 190 0 945 195 0 16 chrX 108110072 108110262 -54489668 - MER5A DNA MER1_type -2 187 1 204 40 0 0 chrX 108110352 108110377 -54489553 + (T)n Simple_repeat Simple_repeat 1 25 0 2468 53 0 3 chrX 108110568 108110867 -54489063 - AluY SINE Alu -13 298 1 694 295 35 28 chrX 108112117 108112371 -54487559 + MIR SINE MIR 6 261 -1 2470 80 0 6 chrX 108112841 108113154 -54486776 - AluSq SINE Alu -2 311 1 3040 193 123 29 chrX 108113378 108114322 -54485608 - L1MC4 LINE L1 0 8042 7010 477 255 69 27 chrX 108114302 108114490 -54485440 - L1MC4 LINE L1 -1382 6660 6465 * 922 344 78 54 chrX 108115104 108115595 -54484335 + L2 LINE L2 368 846 -2468 2510 53 0 3 chrX 108115595 108115897 -54484033 + AluY SINE Alu 1 301 -10 922 344 78 54 chrX 108115897 108116391 -54483539 + L2 LINE L2 846 1377 -1937 207 289 19 0 chrX 108116392 108116444 -54483486 + L2 LINE L2 2577 2629 -685 2621 93 0 6 chrX 108116476 108116842 -54483088 - L1PB1 LINE L1 -4 6147 5784 222 111 19 37 chrX 108116843 108116897 -54483033 + (TA)n Simple_repeat Simple_repeat 1 53 0 2014 67 0 72 chrX 108116899 108116915 -54483015 - L1PB1 LINE L1 -360 5791 5775 297 0 0 0 chrX 108116915 108116948 -54482982 + (CA)n Simple_repeat Simple_repeat 2 34 0 2014 67 0 72 chrX 108116948 108117217 -54482713 - L1PB1 LINE L1 -376 5775 5488 2284 111 0 0 chrX 108117217 108117514 -54482416 + AluSq SINE Alu 1 297 -16 2014 67 0 72 chrX 108117514 108117547 -54482383 - L1PB1 LINE L1 -663 5488 5502 1903 151 42 3 chrX 108117547 108117884 -54482046 - L1MC1 LINE L1 -8 6325 5976 2014 67 0 72 chrX 108117884 108117925 -54482005 - L1PB1 LINE L1 -648 5503 5461 240 315 56 0 chrX 108117927 108118016 -54481914 + L2 LINE L2 2665 2758 -556 1473 265 33 4 chrX 108118021 108118560 -54481370 - L1M4 LINE L1 -2629 3517 2963 712 113 0 32 chrX 108118590 108118714 -54481216 + FLAM_C SINE Alu 24 143 0 346 276 78 0 chrX 108118719 108118835 -54481095 - L1MC5 LINE L1 -60 7901 7777 440 264 135 0 chrX 108118975 108119138 -54480792 + MER58C DNA MER1_type 28 212 -3 1555 212 114 51 chrX 108119139 108119728 -54480202 - L1ME2 LINE L1 -111 6053 5428 1437 159 62 3 chrX 108119730 108120019 -54479911 - L1MB2 LINE L1 -2 6169 5864 1266 225 43 53 chrX 108120047 108120514 -54479416 - L1ME2 LINE L1 -9 6653 6192 * 3867 154 47 17 chrX 108120512 108121277 -54478653 - L1MB2 LINE L1 -2 6169 5382 1528 212 72 14 chrX 108121281 108121826 -54478104 - L1ME2 LINE L1 -459 6203 5616 602 215 9 5 chrX 108121826 108122042 -54477888 + CT-rich Low_complexity Low_complexity 1 217 0 2763 254 274 9 chrX 108122085 108124128 -54475802 - L1ME2 LINE L1 -1117 5527 2945 683 242 45 0 chrX 108124128 108124285 -54475645 + MER63A DNA MER1_type 4 167 -43 1779 279 49 38 chrX 108124370 108125543 -54474387 - L1ME2 LINE L1 -3875 2950 1766 947 265 105 22 chrX 108125554 108126228 -54473702 - L1ME2 LINE L1 -4837 1705 1014 313 283 65 0 chrX 108126254 108126346 -54473584 - L1ME2 LINE L1 -5907 727 630 23 33 0 0 chrX 108127172 108127202 -54472728 + AT_rich Low_complexity Low_complexity 1 30 0 476 359 69 49 chrX 108127310 108127790 -54472140 + L2 LINE L2 2784 3271 -1 1992 102 3 81 chrX 108128012 108128344 -54471586 + AluSx SINE Alu 1 306 -6 2033 107 0 4 chrX 108128612 108128874 -54471056 + AluSx SINE Alu 35 295 -17 901 255 38 91 chrX 108129195 108129646 -54470284 - MLT1J2 LTR MaLR -8 442 16 266 342 166 0 chrX 108129944 108130131 -54469799 + L2 LINE L2 2387 2604 -710 625 302 55 91 chrX 108130184 108130680 -54469250 + L2 LINE L2 1906 2377 -937 1305 221 83 56 chrX 108130680 108131123 -54468807 - LTR16A1 LTR ERVL 0 457 3 625 302 55 91 chrX 108131123 108131241 -54468689 + L2 LINE L2 2377 2498 -816 477 378 27 58 chrX 108131283 108131767 -54468163 + L2 LINE L2 2770 3271 -1 1707 211 54 70 chrX 108132071 108132348 -54467582 - MLT1E2 LTR MaLR 0 626 359 2615 104 20 0 chrX 108132348 108132705 -54467225 - THE1B LTR MaLR 0 364 1 1707 211 54 70 chrX 108132705 108132925 -54467005 - MLT1E2 LTR MaLR -267 359 137 2791 71 6 0 chrX 108133403 108133756 -54466174 - THE1A LTR MaLR 0 355 1 11312 85 12 0 chrX 108133756 108135317 -54464613 - THE1A-int LTR MaLR 0 1580 1 2587 99 3 3 chrX 108135320 108135672 -54464258 - THE1A LTR MaLR -3 352 1 246 79 0 53 chrX 108136381 108136419 -54463511 + L2 LINE L2 3263 3298 -15 314 284 25 12 chrX 108136420 108136501 -54463429 - MIR3 SINE MIR -119 89 8 22 35 0 0 chrX 108136892 108136921 -54463009 + AT_rich Low_complexity Low_complexity 1 29 0 768 294 62 17 chrX 108136988 108137467 -54462463 - L1MC4a LINE L1 -101 6020 5520 247 216 0 20 chrX 108138236 108138287 -54461643 + L2 LINE L2 3263 3312 -1 1862 207 26 22 chrX 108138475 108138934 -54460996 - MER65C LTR ERV1 0 461 1 496 277 88 15 chrX 108139455 108139592 -54460338 - MIR3 SINE MIR -39 169 23 2163 90 0 0 chrX 108139644 108139912 -54460018 + AluSg SINE Alu 32 299 -11 200 0 100 0 chrX 108140048 108140078 -54459852 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 816 292 71 63 chrX 108140130 108140737 -54459193 + L2 LINE L2 2664 3271 -1 207 184 61 20 chrX 108140796 108140845 -54459085 - L3 LINE CR1 -12 1565 1515 * 274 254 48 74 chrX 108140841 108140956 -54458974 - MIR3 SINE MIR -113 95 4 184 336 15 93 chrX 108142313 108142572 -54457358 + L2 LINE L2 2817 3055 -217 354 238 0 0 chrX 108142596 108142676 -54457254 + MER116 DNA Mariner 1 80 0 393 273 109 8 chrX 108142942 108143070 -54456860 + L2 LINE L2 3128 3268 -4 2369 199 53 38 chrX 108144157 108144834 -54455096 + L1MC4a LINE L1 7122 7808 0 502 318 145 17 chrX 108144900 108145324 -54454606 + L2 LINE L2 2718 3188 -84 309 242 234 16 chrX 108145756 108145884 -54454046 - L2 LINE L2 -536 2778 2623 917 256 20 5 chrX 108146083 108146282 -54453648 + MIR SINE MIR 41 242 -20 184 300 200 0 chrX 108148739 108148829 -54451101 - L2 LINE L2 -1590 1724 1617 405 248 59 0 chrX 108149930 108150031 -54449899 + L2 LINE L2 3206 3312 -1 345 82 0 0 chrX 108152497 108152546 -54447384 + (ATG)n Simple_repeat Simple_repeat 2 50 0 875 272 9 9 chrX 108152577 108152794 -54447136 - MIR SINE MIR -38 224 8 449 245 3 22 chrX 108153393 108153495 -54446435 + MER5B DNA MER1_type 87 178 0 189 333 43 14 chrX 108154228 108154369 -54445561 + L2 LINE L2 1745 1889 -1425 1187 320 55 28 chrX 108154617 108155216 -54444714 + L2 LINE L2 2082 2696 -618 281 294 167 0 chrX 108155218 108155320 -54444610 + L2 LINE L2 3127 3245 -27 314 302 290 23 chrX 108155341 108155738 -54444192 + L2 LINE L2 2250 2752 -562 211 270 248 22 chrX 108155881 108156018 -54443912 + L2 LINE L2 2976 3143 -129 182 313 36 36 chrX 108156080 108156163 -54443767 + L2 LINE L2 3177 3259 -54 816 128 0 0 chrX 108156182 108156299 -54443631 + AluJb SINE Alu 1 117 -195 545 283 28 0 chrX 108160823 108160968 -54438962 - MIR3 SINE MIR -25 183 35 255 298 0 61 chrX 108161727 108161841 -54438089 + GA-rich Low_complexity Low_complexity 4 110 0 4171 153 24 16 chrX 108162760 108163501 -54436429 - L1MA7 LINE L1 0 6291 5545 256 361 0 31 chrX 108163726 108163823 -54436107 + MIR SINE MIR 34 127 -81 404 273 129 15 chrX 108163963 108164129 -54435801 + MIR SINE MIR 19 195 -63 184 296 23 0 chrX 108164696 108164740 -54435190 - L2 LINE L2 -19 3253 3209 207 207 293 0 chrX 108164822 108164880 -54435050 + L2 LINE L2 3149 3223 -49 216 0 0 0 chrX 108167637 108167661 -54432269 + (TC)n Simple_repeat Simple_repeat 2 25 0 23 86 0 0 chrX 108171652 108171710 -54428220 + AT_rich Low_complexity Low_complexity 1 58 0 252 109 0 22 chrX 108171923 108171969 -54427961 - L1ME4a LINE L1 -16 6105 6061 417 52 0 0 chrX 108172220 108172278 -54427652 - Alu SINE Alu -1 309 252 258 350 128 0 chrX 108173113 108173230 -54426700 - MIR3 SINE MIR -4 204 73 410 315 56 116 chrX 108174646 108175024 -54424906 + L2 LINE L2 2918 3272 0 380 90 0 75 chrX 108175155 108175289 -54424641 + (TA)n Simple_repeat Simple_repeat 2 125 0 453 255 0 0 chrX 108175449 108175606 -54424324 + (TA)n Simple_repeat Simple_repeat 2 158 0 300 247 21 43 chrX 108175607 108175700 -54424230 + L1MC4 LINE L1 6613 6703 -1339 543 247 0 0 chrX 108175717 108176017 -54423913 + (TA)n Simple_repeat Simple_repeat 1 300 0 312 255 0 43 chrX 108176022 108176116 -54423814 + L1MC4 LINE L1 6614 6703 -1339 * 317 263 0 42 chrX 108176048 108176143 -54423787 - L1MC4 LINE L1 -1339 6703 6613 947 282 75 35 chrX 108176437 108176813 -54423117 + L3 LINE CR1 1185 1575 -2 653 189 0 0 chrX 108178546 108178657 -54421273 + MER7A DNA MER2_type 1 109 -237 408 143 16 0 chrX 108178670 108178733 -54421197 + Tigger2 DNA MER2_type 6 69 -2649 * 2236 86 0 10 chrX 108178723 108179037 -54420893 + Tigger2 DNA MER2_type 2273 2583 -135 882 191 12 6 chrX 108179060 108179222 -54420708 + Tigger2 DNA MER2_type 2556 2718 0 1332 154 23 0 chrX 108179223 108179437 -54420493 + MER7A DNA MER2_type 118 336 -1 754 238 49 0 chrX 108179693 108179857 -54420073 - MIR3 SINE MIR -5 203 32 607 276 42 16 chrX 108181429 108181621 -54418309 - MIR SINE MIR -58 204 8 602 285 67 10 chrX 108182615 108182808 -54417122 + L2 LINE L2 2881 3084 -229 1396 217 85 77 chrX 108183363 108184111 -54415819 - LTR1B LTR ERV1 0 826 1 256 167 37 0 chrX 108184870 108184924 -54415006 - MIR3 SINE MIR -4 204 149 301 91 0 0 chrX 108185193 108185237 -54414693 - L1MA9 LINE L1 -36 6276 6233 216 0 0 0 chrX 108186223 108186247 -54413683 + (CA)n Simple_repeat Simple_repeat 2 25 0 490 318 58 7 chrX 108186317 108186471 -54413459 + MIR3 SINE MIR 32 193 -15 432 264 218 16 chrX 108187073 108187266 -54412664 + MIR SINE MIR 28 259 -3 198 279 152 0 chrX 108187544 108187623 -54412307 - MIR SINE MIR -60 202 112 929 298 98 31 chrX 108187823 108188243 -54411687 + MLT1J2 LTR MaLR 3 450 0 328 181 153 0 chrX 108188280 108188350 -54411580 - Tigger7 DNA MER2_type -2 2489 2409 1526 105 0 9 chrX 108188350 108188569 -54411361 - Tigger1 DNA MER2_type 0 2418 2202 1060 133 0 6 chrX 108188558 108188716 -54411214 - Tigger1 DNA MER2_type -2261 157 1 * 1452 191 0 40 chrX 108188738 108189010 -54410920 - Tigger7 DNA MER2_type -472 261 1 275 291 13 0 chrX 108189633 108189712 -54410218 - L3b LINE CR1 -208 1375 1296 260 125 0 36 chrX 108190305 108190361 -54409569 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 405 0 0 0 chrX 108190908 108190953 -54408977 + (CA)n Simple_repeat Simple_repeat 2 46 0 396 103 0 0 chrX 108191200 108191258 -54408672 + (TG)n Simple_repeat Simple_repeat 2 59 0 2312 104 0 13 chrX 108192611 108192927 -54407003 + AluSx SINE Alu 1 312 0 2411 47 0 0 chrX 108193499 108193817 -54406113 - AluY SINE Alu 0 319 2 309 278 46 87 chrX 108194606 108194779 -54405151 + MIR3 SINE MIR 35 200 -8 261 290 14 0 chrX 108195648 108195717 -54404213 + GA-rich Low_complexity Low_complexity 2 71 0 1748 163 6 39 chrX 108195751 108196088 -54403842 + MARNA DNA Mariner 261 586 0 195 330 140 0 chrX 108196321 108196421 -54403509 + L2 LINE L2 3153 3266 -6 534 283 51 46 chrX 108196547 108196784 -54403146 + MIR SINE MIR 2 239 -23 333 0 0 0 chrX 108197157 108197194 -54402736 + (TA)n Simple_repeat Simple_repeat 2 38 0 306 0 0 0 chrX 108197202 108197236 -54402694 + (CA)n Simple_repeat Simple_repeat 2 35 0 1882 146 7 11 chrX 108200490 108200777 -54399153 - AluJo SINE Alu -23 289 4 319 338 180 40 chrX 108200976 108201400 -54398530 + L2 LINE L2 1238 1601 -1713 225 65 0 0 chrX 108201400 108201431 -54398499 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 319 338 180 40 chrX 108201431 108201817 -54398113 + L2 LINE L2 1601 2162 -1152 5906 118 23 16 chrX 108201822 108202738 -54397192 - L1MA3 LINE L1 0 6305 5384 1300 217 4 0 chrX 108202742 108202991 -54396939 + L1PA13 LINE L1 1165 1414 -6167 8763 241 24 28 chrX 108202992 108206267 -54393663 + L1PB1 LINE L1 693 3958 -3626 27363 70 1 1 chrX 108206314 108212468 -54387462 + L1PA5 LINE L1 1 6154 0 8994 194 24 38 chrX 108212491 108213538 -54386392 + L1PA13 LINE L1 3788 4849 -2735 2221 90 0 4 chrX 108213538 108213816 -54386114 - AluY SINE Alu -24 287 11 8994 194 24 38 chrX 108213816 108213971 -54385959 + L1PA13 LINE L1 4849 5005 -2579 207 0 0 0 chrX 108213971 108213994 -54385936 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8994 194 24 38 chrX 108213994 108215135 -54384795 + L1PA13 LINE L1 5005 6098 -1486 6424 125 68 18 chrX 108215133 108215498 -54384432 - L1PBa LINE L1 -3604 3258 2912 * 2021 101 38 0 chrX 108215498 108215765 -54384165 - AluY SINE Alu -12 299 23 6424 125 68 18 chrX 108215765 108216869 -54383061 - L1PBa LINE L1 -3950 2912 1709 * 9726 180 23 5 chrX 108216865 108218276 -54381654 + L1PB1 LINE L1 4421 5804 -1785 1837 31 0 9 chrX 108218276 108218486 -54381444 + L1PA4 LINE L1 5932 6144 -11 225 0 0 0 chrX 108218486 108218511 -54381419 + (CA)n Simple_repeat Simple_repeat 2 26 0 1837 31 0 9 chrX 108218511 108218523 -54381407 + L1PA4 LINE L1 6144 6155 0 9726 180 23 5 chrX 108218523 108220235 -54379695 + L1PB1 LINE L1 5804 7589 0 5267 141 14 3 chrX 108220248 108221736 -54378194 + L1PA13 LINE L1 6082 7582 -19 241 207 35 11 chrX 108221736 108221823 -54378107 - L1 LINE L1 -2928 3218 3130 2067 88 46 29 chrX 108221826 108222132 -54377798 - AluY SINE Alu 0 311 1 197 381 76 8 chrX 108222158 108222276 -54377654 + L2 LINE L2 2918 3043 -229 212 320 0 0 chrX 108222281 108222331 -54377599 + L2 LINE L2 3207 3256 -16 26309 94 6 9 chrX 108222543 108223543 -54376387 + L1PA7 LINE L1 1321 2323 -3831 207 0 0 0 chrX 108223543 108223566 -54376364 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 26309 94 6 9 chrX 108223566 108227404 -54372526 + L1PA7 LINE L1 2323 6143 -11 21 57 0 0 chrX 108227631 108227666 -54372264 + AT_rich Low_complexity Low_complexity 1 35 0 869 208 20 0 chrX 108227862 108228059 -54371871 + MLT2B1 LTR ERVL 1 201 -319 1054 166 17 137 chrX 108228071 108228415 -54371515 + MLT1A1 LTR MaLR 3 305 -60 319 0 0 0 chrX 108228415 108228453 -54371477 - L1PA4 LINE L1 -299 5856 5819 * 2419 42 9 21 chrX 108228422 108228753 -54371177 + L1PA4 LINE L1 5829 6155 0 232 299 68 43 chrX 108229507 108229624 -54370306 - L2 LINE L2 -14 3299 3180 446 285 69 0 chrX 108230269 108230413 -54369517 + L2 LINE L2 2964 3117 -196 2328 195 162 116 chrX 108230438 108231413 -54368517 + LTR28 LTR ERV1 1 1020 0 16449 166 20 22 chrX 108231581 108235532 -54364398 + HUERS-P2 LTR ERV1 74 4223 -417 5263 139 6 12 chrX 108235532 108236376 -54363554 + LTR28-int LTR ERV1 6252 7090 -1 358 228 81 16 chrX 108236377 108236504 -54363426 + LTR28 LTR ERV1 1 122 -704 1661 178 107 82 chrX 108236533 108237094 -54362836 + LTR28 LTR ERV1 109 674 -111 396 250 158 0 chrX 108237096 108237216 -54362714 - MER5A DNA MER1_type -18 171 33 820 134 117 18 chrX 108237323 108237494 -54362436 + MER20 DNA MER1_type 32 219 0 22 35 0 0 chrX 108237553 108237582 -54362348 + AT_rich Low_complexity Low_complexity 1 29 0 354 321 0 9 chrX 108237724 108237836 -54362094 - MIR3 SINE MIR -7 201 91 512 268 318 0 chrX 108238115 108238313 -54361617 - MIR SINE MIR 0 262 2 302 353 8 0 chrX 108238343 108238462 -54361468 + L2 LINE L2 3152 3271 -1 427 309 87 0 chrX 108240092 108240241 -54359689 + MIR3 SINE MIR 45 206 -2 770 268 34 19 chrX 108241029 108241234 -54358696 + MER63A DNA MER1_type 1 208 -2 1035 262 0 34 chrX 108242322 108242585 -54357345 - MIR SINE MIR -2 260 7 187 380 51 0 chrX 108242646 108242725 -54357205 + MIR SINE MIR 31 113 -95 367 271 103 0 chrX 108243532 108243639 -54356291 + MER94 DNA DNA 1 118 -16 500 274 82 59 chrX 108244297 108244552 -54355378 + MIR SINE MIR 1 261 -1 207 284 30 0 chrX 108245005 108245072 -54354858 + CT-rich Low_complexity Low_complexity 3 71 0 18667 166 24 12 chrX 108246116 108248447 -54351483 + L1MA2 LINE L1 16 2317 -5406 4410 36 4 0 chrX 108248447 108248971 -54350959 - L1PA5 LINE L1 -4 6150 5625 18667 166 24 12 chrX 108248971 108254221 -54345709 + L1MA2 LINE L1 2317 7698 -25 223 70 23 23 chrX 108254221 108254264 -54345666 + (TA)n Simple_repeat Simple_repeat 1 43 0 18667 166 24 12 chrX 108254264 108254291 -54345639 + L1MA2 LINE L1 7698 7723 0 215 239 0 0 chrX 108254709 108254755 -54345175 + CT-rich Low_complexity Low_complexity 1 46 0 274 290 0 0 chrX 108254954 108255023 -54344907 - MIR SINE MIR 0 262 194 766 299 22 0 chrX 108255057 108255285 -54344645 + MIR SINE MIR 31 262 0 643 274 18 12 chrX 108255297 108255465 -54344465 - MIR SINE MIR -87 175 7 190 283 94 0 chrX 108256060 108256113 -54343817 - L2 LINE L2 -302 3011 2954 273 237 43 43 chrX 108256189 108256282 -54343648 - MARNA DNA Mariner -9 577 485 575 266 128 14 chrX 108257188 108257406 -54342524 - MIR SINE MIR 0 262 20 761 248 66 63 chrX 108257605 108257940 -54341990 + MER102b DNA MER1_type 1 336 -5 3564 168 24 10 chrX 108258530 108259244 -54340686 + L1MB8 LINE L1 5274 5997 -187 885 183 0 6 chrX 108259405 108259585 -54340345 + L1MB8 LINE L1 5998 6176 -2 1116 193 33 109 chrX 108260794 108261187 -54338743 - MLT1A1 LTR MaLR -1 364 2 4246 97 6 10 chrX 108261227 108261849 -54338081 + Harlequin LTR ERV1 2520 3139 -5260 5653 95 13 8 chrX 108261856 108262679 -54337251 + Harlequin LTR ERV1 4080 4906 -3493 1780 167 149 74 chrX 108262681 108263488 -54336442 + Harlequin LTR ERV1 849 1715 -5181 4458 92 2 2 chrX 108263488 108264118 -54335812 + Harlequin LTR ERV1 7770 8399 0 5108 87 27 0 chrX 108264118 108264787 -54335143 + LTR12 LTR ERV1 1 687 -1 1877 211 53 78 chrX 108264956 108265524 -54334406 - MLT2B3 LTR ERVL 0 554 1 251 309 0 0 chrX 108266093 108266161 -54333769 + CT-rich Low_complexity Low_complexity 3 70 0 212 333 48 0 chrX 108267699 108267783 -54332147 - MIR SINE MIR -85 123 36 180 77 0 0 chrX 108268827 108268853 -54331077 + (TG)n Simple_repeat Simple_repeat 2 27 0 204 158 0 0 chrX 108269260 108269298 -54330632 + GA-rich Low_complexity Low_complexity 1 38 0 369 304 201 0 chrX 108269399 108269583 -54330347 - MIR SINE MIR -2 260 40 * 414 270 34 0 chrX 108269547 108269636 -54330294 + MIR SINE MIR 34 125 -137 374 385 130 13 chrX 108269844 108270236 -54329694 - L2 LINE L2 0 3272 2835 898 290 12 20 chrX 108271427 108271679 -54328251 + MIR SINE MIR 13 262 0 214 409 0 0 chrX 108272347 108272440 -54327490 - MIR SINE MIR -111 151 59 866 243 58 29 chrX 108272612 108272855 -54327075 + MIR SINE MIR 3 252 -10 23 0 0 0 chrX 108272858 108272881 -54327049 + AT_rich Low_complexity Low_complexity 1 23 0 297 263 38 0 chrX 108272892 108272972 -54326958 + MIR SINE MIR 180 262 0 297 303 50 0 chrX 108273130 108273229 -54326701 + L3 LINE CR1 1392 1495 -82 536 206 0 0 chrX 108273274 108273371 -54326559 - MIR SINE MIR -101 161 65 289 200 0 0 chrX 108274080 108274135 -54325795 - MER21B LTR ERV1 -124 739 685 216 294 137 10 chrX 108274402 108274504 -54325426 + L2 LINE L2 2951 3065 -207 1088 36 0 7 chrX 108274570 108274708 -54325222 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 1422 244 107 65 chrX 108274915 108275534 -54324396 + MER21B LTR ERV1 67 711 -152 320 273 50 0 chrX 108275535 108275634 -54324296 + MER21B LTR ERV1 651 754 -109 911 220 33 32 chrX 108275829 108276265 -54323665 + MLT1D LTR MaLR 1 473 -32 3021 139 18 65 chrX 108276268 108276865 -54323065 + Tigger3b DNA MER2_type 4 572 -659 18795 178 26 8 chrX 108276878 108284450 -54315480 + L1MA2 LINE L1 8 7721 -2 710 169 10 73 chrX 108284457 108284692 -54315238 + L1M3c LINE L1 1040 1266 -4875 1759 223 7 7 chrX 108284713 108285134 -54314796 + L1ME1 LINE L1 5490 5910 -256 1436 247 25 31 chrX 108285138 108285530 -54314400 - MSTD LTR MaLR -6 390 1 449 284 31 42 chrX 108285530 108285791 -54314139 + L1ME1 LINE L1 5904 6161 -5 289 252 43 139 chrX 108286095 108286210 -54313720 - L2 LINE L2 -15 3257 3154 275 277 0 107 chrX 108287285 108287397 -54312533 + MIR3 SINE MIR 102 201 -7 261 254 67 119 chrX 108287413 108287535 -54312395 - L2 LINE L2 0 3272 3156 1951 39 0 0 chrX 108287535 108287768 -54312162 + L1PA3 LINE L1 5920 6152 -3 261 254 67 119 chrX 108287768 108287779 -54312151 - L2 LINE L2 -116 3156 3146 1462 275 5 26 chrX 108288537 108288962 -54310968 + L1M2 LINE L1 182 597 -5716 * 11671 214 53 8 chrX 108288942 108292708 -54307222 + L1M2 LINE L1 2068 6003 -524 306 50 0 0 chrX 108292824 108292864 -54307066 + (CA)n Simple_repeat Simple_repeat 2 41 0 34861 98 5 10 chrX 108293121 108299290 -54300640 + L1PA6 LINE L1 11 6151 -3 454 313 108 0 chrX 108299544 108299710 -54300220 - MIR3 SINE MIR -11 197 14 537 120 22 68 chrX 108299919 108300054 -54299876 + LTR10A LTR ERV1 433 609 0 702 198 54 140 chrX 108300054 108300634 -54299296 + LTR10A-int LTR ERV1 5 499 -6335 789 152 0 22 chrX 108301015 108301199 -54298731 + GA-rich Low_complexity Low_complexity 1 180 0 5236 94 12 30 chrX 108301235 108302185 -54297745 + LTR10A-int LTR ERV1 710 4405 -3380 822 89 15 0 chrX 108302162 108302297 -54297633 + Harlequin LTR ERV1 1584 1720 -5176 * 298 238 0 60 chrX 108302298 108302382 -54297548 - LTR8 LTR ERV1 -456 235 157 10799 159 10 24 chrX 108302384 108303665 -54296265 + Harlequin LTR ERV1 1806 3104 -3545 2292 97 0 0 chrX 108303665 108303953 -54295977 - AluY SINE Alu -23 288 1 10799 159 10 24 chrX 108303953 108305849 -54294081 + Harlequin LTR ERV1 3104 6645 -4 1343 177 191 30 chrX 108305860 108306290 -54293640 + LTR10A LTR ERV1 12 510 -99 35 0 0 0 chrX 108306293 108306328 -54293602 + AT_rich Low_complexity Low_complexity 1 35 0 2654 161 21 44 chrX 108306413 108306980 -54292950 - L1MD1 LINE L1 0 6242 5689 363 132 15 0 chrX 108306997 108307065 -54292865 - L1MD1 LINE L1 -930 5370 5302 * 865 162 11 32 chrX 108307059 108307195 -54292735 - L1MC/D LINE L1 -546 5696 5564 1960 164 122 10 chrX 108307195 108307580 -54292350 + MSTA LTR MaLR 1 428 0 865 162 11 32 chrX 108307580 108307628 -54292302 - L1MC/D LINE L1 -678 5564 5516 * 1706 245 42 12 chrX 108307625 108308197 -54291733 - L1MDa LINE L1 -1841 4699 4111 6649 56 2 0 chrX 108308199 108309068 -54290862 - L1PA6 LINE L1 0 6154 5284 * 27905 111 7 9 chrX 108309062 108313490 -54286440 - L1PA6 LINE L1 -1718 4428 11 3796 256 51 11 chrX 108313503 108315124 -54284806 - L1MDa LINE L1 -2421 4119 2431 7117 218 41 40 chrX 108315137 108315941 -54283989 - L1MDa LINE L1 -4358 2182 1381 9508 110 11 3 chrX 108315941 108318188 -54281742 - L1PA8 LINE L1 0 6172 3912 7117 218 41 40 chrX 108318188 108319461 -54280469 - L1MDa LINE L1 -5159 1381 101 446 225 366 0 chrX 108319463 108319605 -54280325 + Tigger5 DNA MER2_type 1 194 -2129 * 527 138 0 0 chrX 108319602 108319682 -54280248 + Tigger5 DNA MER2_type 2244 2323 0 442 169 0 12 chrX 108319682 108319765 -54280165 - L1MDa LINE L1 -6440 100 19 180 0 0 0 chrX 108319796 108319816 -54280114 + (TG)n Simple_repeat Simple_repeat 1 20 0 737 313 36 31 chrX 108319994 108320218 -54279712 + MIR SINE MIR 2 226 -36 210 395 0 25 chrX 108320324 108320443 -54279487 + L2 LINE L2 2826 2941 -331 343 275 175 64 chrX 108321854 108322197 -54277733 + MLT1I LTR MaLR 67 446 0 937 347 135 45 chrX 108322199 108324213 -54275717 + L2 LINE L2 701 2894 -420 887 274 71 14 chrX 108324302 108324812 -54275118 - L1MEc LINE L1 -5222 1174 636 2019 161 113 2 chrX 108324822 108324887 -54275043 - L1MA9 LINE L1 -6 6306 6250 309 51 0 0 chrX 108324887 108324926 -54275004 + (TA)n Simple_repeat Simple_repeat 1 39 0 2019 161 113 2 chrX 108324926 108325301 -54274629 - L1MA9 LINE L1 -62 6250 5817 11407 161 15 13 chrX 108325324 108328384 -54271546 - L1MA2 LINE L1 0 6304 3229 2021 158 111 5 chrX 108328384 108328771 -54271159 + MSTA LTR MaLR 1 428 0 11407 161 15 13 chrX 108328771 108329154 -54270776 - L1MA2 LINE L1 -3075 3229 2849 3243 142 24 2 chrX 108329158 108329709 -54270221 - L1PA12 LINE L1 -212 5956 5394 3025 99 11 5 chrX 108329711 108330144 -54269786 - L1PA8 LINE L1 -4 6168 5733 3028 168 16 2 chrX 108330150 108330709 -54269221 - HSMAR2 DNA Mariner -734 568 2 2452 200 8 2 chrX 108330709 108331213 -54268717 - L1 LINE L1 -2135 4011 3505 1107 214 0 7 chrX 108331208 108331489 -54268441 + L1 LINE L1 4489 4767 -1379 * 1540 64 34 115 chrX 108331489 108331578 -54268352 + L1PB1 LINE L1 5874 5969 -182 2200 98 3 25 chrX 108331578 108331896 -54268034 + AluY SINE Alu 1 311 0 1540 64 34 115 chrX 108331896 108332100 -54267830 + L1PB1 LINE L1 5969 6144 -7 579 136 42 0 chrX 108332124 108332242 -54267688 + L1MA2 LINE L1 6004 6126 -178 5333 127 24 15 chrX 108332246 108332638 -54267292 + L1PA7 LINE L1 3 390 -6079 2263 107 7 0 chrX 108332638 108332929 -54267001 - AluY SINE Alu -18 293 1 5333 127 24 15 chrX 108332929 108338776 -54261154 + L1PA7 LINE L1 390 6469 0 5964 71 43 6 chrX 108338776 108339598 -54260332 + L1PA8 LINE L1 5314 6165 -7 1175 119 0 0 chrX 108339599 108339784 -54260146 + L1MA2 LINE L1 6120 6304 0 2903 176 77 60 chrX 108339794 108340398 -54259532 + L1MB8 LINE L1 5318 5941 -237 2114 163 38 55 chrX 108340398 108340871 -54259059 - MLT1C LTR MaLR -2 465 1 2903 176 77 60 chrX 108340871 108341113 -54258817 + L1MB8 LINE L1 5941 6178 0 1154 168 5 28 chrX 108341240 108341454 -54258476 - MER3 DNA MER1_type 0 209 1 1544 215 66 38 chrX 108342794 108342851 -54257079 - L1ME3 LINE L1 -30 6132 6078 1588 203 21 3 chrX 108342851 108343186 -54256744 - MER58B DNA MER1_type 0 341 1 1544 215 66 38 chrX 108343186 108343597 -54256333 - L1ME3 LINE L1 -84 6078 5651 258 56 0 0 chrX 108343607 108343643 -54256287 + (TG)n Simple_repeat Simple_repeat 1 36 0 498 103 0 0 chrX 108343643 108343721 -54256209 + (GA)n Simple_repeat Simple_repeat 2 79 0 28311 116 18 57 chrX 108344158 108350569 -54249361 - L1PA7 LINE L1 -1 6153 12 309 325 0 0 chrX 108350769 108350920 -54249010 + CT-rich Low_complexity Low_complexity 2 152 0 290 287 42 0 chrX 108351001 108351168 -54248762 + (TCTCTG)n Simple_repeat Simple_repeat 3 176 0 224 149 21 0 chrX 108351640 108351687 -54248243 + (TG)n Simple_repeat Simple_repeat 2 49 0 230 278 48 87 chrX 108351748 108351874 -54248056 + MIR3 SINE MIR 71 191 -17 249 211 0 0 chrX 108351972 108352024 -54247906 + L3 LINE CR1 1524 1575 -2 290 319 43 25 chrX 108354834 108354997 -54244933 + MIR SINE MIR 84 249 -13 2115 170 30 59 chrX 108355063 108355587 -54244343 + LTR54 LTR ERV1 1 509 -1 781 252 17 25 chrX 108355601 108355839 -54244091 + MER65-int LTR ERV1 1915 2150 -4181 329 272 11 0 chrX 108355827 108355919 -54244011 + MER65-int LTR ERV1 2092 2184 -4147 * 311 210 16 0 chrX 108356083 108356145 -54243785 + MER65-int LTR ERV1 2178 2240 -4091 290 250 91 30 chrX 108357431 108357563 -54242367 + MER65-int LTR ERV1 851 990 -4133 708 250 99 17 chrX 108357565 108357797 -54242133 + MER34C LTR ERV1 160 410 -175 453 240 3 42 chrX 108357901 108358099 -54241831 + MER65-int LTR ERV1 1308 2379 -2492 3771 31 0 2 chrX 108358126 108358575 -54241355 - LTR7 LTR ERV1 -2 448 1 2314 95 42 13 chrX 108358575 108358954 -54240976 - HERVH LTR ERV1 0 7713 7324 1237 115 58 0 chrX 108358954 108359162 -54240768 - HERVH LTR ERV1 -1894 5819 5600 4127 143 0 1 chrX 108359163 108359826 -54240104 - HERVH LTR ERV1 -2564 5149 4488 3342 115 4 6 chrX 108359828 108360331 -54239599 - HERVH LTR ERV1 -3720 3993 3492 * 19797 102 61 23 chrX 108360321 108363490 -54236440 - HERVH LTR ERV1 -4423 3290 1 3860 25 0 0 chrX 108363492 108363940 -54235990 - LTR7 LTR ERV1 -2 448 1 499 213 52 24 chrX 108363941 108364152 -54235778 + MER31-int LTR ERV1 1774 1990 -2946 411 253 63 72 chrX 108364165 108364386 -54235544 + MER31-int LTR ERV1 2712 2930 -1950 * 693 218 53 42 chrX 108364358 108364734 -54235196 + MER31-int LTR ERV1 1760 2444 -2679 11465 35 1 0 chrX 108364737 108366121 -54233809 - L1PA2 LINE L1 -1387 4759 3375 7565 31 0 0 chrX 108366121 108367512 -54232418 + L1PA2 LINE L1 4763 6153 -2 590 239 8 0 chrX 108367518 108367648 -54232282 + MER31-int LTR ERV1 4054 4184 -3936 3017 197 93 75 chrX 108367711 108368509 -54231421 + MER31-int LTR ERV1 2493 3275 -1596 1610 83 76 40 chrX 108368509 108368785 -54231145 - L1MA5A LINE L1 -4 6293 6008 3017 197 93 75 chrX 108368785 108369816 -54230114 + MER31-int LTR ERV1 3275 4064 -807 973 161 19 0 chrX 108370161 108370322 -54229608 + MER52A LTR ERV1 1592 1755 0 271 226 16 0 chrX 108370322 108370384 -54229546 + MER31-int LTR ERV1 4058 4120 -751 1664 220 108 22 chrX 108370396 108370850 -54229080 + MER31-int LTR ERV1 6629 7121 -416 255 150 0 0 chrX 108370884 108370924 -54229006 + MER31-int LTR ERV1 7108 7147 -390 2479 156 19 59 chrX 108370925 108371452 -54228478 + LTR54 LTR ERV1 5 510 0 508 307 22 22 chrX 108371990 108372169 -54227761 - MLT1J2 LTR MaLR -5 445 267 450 256 175 12 chrX 108372171 108372331 -54227599 - MER5A DNA MER1_type 0 189 4 222 293 0 0 chrX 108372342 108372400 -54227530 + MER5B DNA MER1_type 1 58 -120 2595 243 67 44 chrX 108372401 108373551 -54226379 - L1ME1 LINE L1 -4 6162 4992 270 238 0 32 chrX 108373606 108373669 -54226261 + L1MA4A LINE L1 435 495 -6354 10926 200 53 9 chrX 108373887 108375253 -54224677 + L1MA4A LINE L1 681 1986 -4862 189 0 0 0 chrX 108375253 108375274 -54224656 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 10926 200 53 9 chrX 108375274 108378441 -54221489 + L1MA4A LINE L1 1986 5430 -1418 180 0 0 0 chrX 108378441 108378461 -54221469 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 10926 200 53 9 chrX 108378461 108378623 -54221307 + L1MA4A LINE L1 5430 5583 -1265 5266 150 23 13 chrX 108378604 108379551 -54220379 + L1MA4A LINE L1 6029 6985 -20 * 9152 237 50 35 chrX 108379572 108380027 -54219903 - L1 LINE L1 -1279 6286 5839 2068 113 21 0 chrX 108380027 108380309 -54219621 - AluSx SINE Alu -24 288 1 9152 237 50 35 chrX 108380309 108382646 -54217284 - L1 LINE L1 -1726 5839 3539 321 26 0 0 chrX 108382646 108382684 -54217246 + (TG)n Simple_repeat Simple_repeat 1 38 0 9152 237 50 35 chrX 108382684 108384314 -54215616 - L1 LINE L1 -4026 3539 2074 1869 145 74 8 chrX 108384314 108384666 -54215264 + THE1C LTR MaLR 1 375 0 9152 237 50 35 chrX 108384666 108384696 -54215234 - L1 LINE L1 -5491 2074 2046 227 289 0 0 chrX 108384752 108384797 -54215133 - L1 LINE L1 -6361 1205 1161 1547 296 50 26 chrX 108384881 108385424 -54214506 - L1 LINE L1 -6227 1339 784 231 61 0 0 chrX 108386535 108386568 -54213362 + (TC)n Simple_repeat Simple_repeat 2 34 0 2334 256 31 38 chrX 108387366 108389306 -54210624 + L1M3c LINE L1 173 2204 -4179 268 284 24 0 chrX 108389414 108389541 -54210389 + L1M3c LINE L1 2025 2154 -4230 377 269 129 6 chrX 108389561 108389732 -54210198 + L2 LINE L2 3034 3225 -88 21 0 0 0 chrX 108389747 108389768 -54210162 + AT_rich Low_complexity Low_complexity 1 21 0 971 219 23 23 chrX 108389785 108390213 -54209717 + L1M3c LINE L1 2166 2598 -3784 9952 212 79 11 chrX 108390257 108390610 -54209320 - L1PB1 LINE L1 -1 6866 6539 180 0 0 0 chrX 108390610 108390630 -54209300 + (TC)n Simple_repeat Simple_repeat 2 21 0 192 40 0 0 chrX 108390631 108390656 -54209274 + (TA)n Simple_repeat Simple_repeat 1 25 0 2055 145 0 3 chrX 108390658 108390955 -54208975 - AluSx SINE Alu -15 297 2 9952 212 79 11 chrX 108390955 108391100 -54208830 - L1PB1 LINE L1 -328 6539 6405 2414 126 16 16 chrX 108391100 108391473 -54208457 - THE1C LTR MaLR -2 373 1 9663 123 47 12 chrX 108391473 108393000 -54206930 - THE1C-int LTR MaLR 0 1580 1 2257 135 13 34 chrX 108393000 108393379 -54206551 - THE1C LTR MaLR 0 375 5 9952 212 79 11 chrX 108393379 108397552 -54202378 - L1PB1 LINE L1 -461 6406 1690 4175 152 40 46 chrX 108397563 108398537 -54201393 - MER11C LTR ERVK -13 1058 1 2365 139 11 6 chrX 108398537 108399248 -54200682 - L1PB1 LINE L1 -5195 1668 804 6482 185 15 38 chrX 108399254 108401142 -54198788 - L1MA2 LINE L1 -296 6008 4155 1101 144 23 0 chrX 108401142 108401315 -54198615 + AluSg/x SINE Alu 135 311 -1 6482 185 15 38 chrX 108401315 108402207 -54197723 - L1MA2 LINE L1 -2149 4155 3244 1071 212 136 5 chrX 108402231 108402613 -54197317 - L1MEc LINE L1 -816 6141 5710 6319 74 2 2 chrX 108402616 108403757 -54196173 - L1PA7 LINE L1 -5 6149 4981 2180 114 6 3 chrX 108403766 108404100 -54195830 + L1PA7 LINE L1 4675 5009 -1137 1844 156 0 30 chrX 108404115 108404416 -54195514 - AluSx SINE Alu -19 293 2 2833 225 93 20 chrX 108404416 108405274 -54194656 - L1MEc LINE L1 -1244 5713 4793 293 204 56 37 chrX 108405461 108405569 -54194361 - L1MEc LINE L1 -2164 4793 4684 * 3163 236 46 16 chrX 108405542 108406671 -54193259 - L1MEc LINE L1 -3097 3860 2710 207 0 0 0 chrX 108406671 108406694 -54193236 + (TA)n Simple_repeat Simple_repeat 2 24 0 3163 236 46 16 chrX 108406694 108406817 -54193113 - L1MEc LINE L1 -4247 2710 2592 2301 265 42 35 chrX 108407132 108408101 -54191829 - L1MEc LINE L1 -4652 2307 1332 2679 292 74 26 chrX 108408230 108409271 -54190659 - L1MEc LINE L1 -5745 1114 24 1117 235 67 0 chrX 108409278 108409606 -54190324 - Charlie4a DNA MER1_type -122 386 37 6960 219 48 26 chrX 108609630 108609890 -53990040 - L1M4 LINE L1 -895 5251 4998 2214 101 20 0 chrX 108609890 108610196 -53989734 - AluSx SINE Alu 0 312 1 6960 219 48 26 chrX 108610196 108612195 -53987735 - L1M4 LINE L1 -1148 4998 2944 256 269 0 0 chrX 108612189 108612256 -53987674 - L1MEd LINE L1 -5447 672 606 * 1839 126 7 19 chrX 108613387 108613682 -53986248 + AluSx SINE Alu 16 307 0 6007 68 66 0 chrX 108613775 108614819 -53985111 - L1PA8A LINE L1 -13 6118 5063 2226 112 6 0 chrX 108614819 108615168 -53984762 + L1PA8A LINE L1 4708 5058 -1088 28 61 0 0 chrX 108615660 108615709 -53984221 + AT_rich Low_complexity Low_complexity 1 49 0 3286 93 18 27 chrX 108615929 108616486 -53983444 - L1MA2 LINE L1 -99 6205 5654 567 283 41 70 chrX 108616483 108617066 -53982864 - L1M4 LINE L1 -2017 4129 3564 * 1318 77 0 6 chrX 108617424 108617606 -53982324 - L1PA13 LINE L1 -5 6158 5978 2412 71 0 3 chrX 108618001 108618310 -53981620 + AluY SINE Alu 1 308 -3 317 274 94 35 chrX 108619198 108619399 -53980531 + L2 LINE L2 1598 1810 -1504 1395 123 163 56 chrX 108619440 108619691 -53980239 + AluSx SINE Alu 21 298 -14 729 284 83 44 chrX 108619729 108619904 -53980026 - L1ME4a LINE L1 -19 6102 5935 1897 211 19 85 chrX 108619904 108620483 -53979447 + MLT1F LTR MaLR 2 542 0 729 284 83 44 chrX 108620483 108621150 -53978780 - L1ME4a LINE L1 -186 5935 5217 1541 116 3 100 chrX 108621803 108622114 -53977816 + LTR12 LTR ERV1 4 284 -430 351 176 0 0 chrX 108622114 108622188 -53977742 + LTR30 LTR ERV1 551 624 -98 749 123 45 66 chrX 108622188 108622354 -53977576 + pTR5 LTR ERV1 299 483 -231 * 26445 108 7 11 chrX 108622329 108627166 -53972764 + HERV9 LTR ERV1 55 4948 -3451 2069 168 95 89 chrX 108627165 108628059 -53971871 + Harlequin LTR ERV1 842 1740 -5156 * 5161 111 7 0 chrX 108628057 108628826 -53971104 + Harlequin LTR ERV1 7626 8399 0 1454 98 3 136 chrX 108628826 108629142 -53970788 + LTR12 LTR ERV1 1 274 -440 329 229 31 0 chrX 108629143 108629239 -53970691 + LTR30 LTR ERV1 542 640 -82 681 121 0 0 chrX 108629246 108629345 -53970585 + LTR12 LTR ERV1 615 713 -1 3128 257 48 37 chrX 108629345 108631485 -53968445 + L1MA8 LINE L1 20 2929 -4177 2268 144 24 14 chrX 108631496 108632106 -53967824 + L1M1 LINE L1 5088 5706 -594 8299 167 30 8 chrX 108632118 108634819 -53965111 + L1MA8 LINE L1 4488 7251 0 23 0 0 0 chrX 108634819 108634842 -53965088 + AT_rich Low_complexity Low_complexity 1 23 0 6213 83 42 0 chrX 108634987 108635928 -53964002 - L1PA11 LINE L1 -2 6172 5203 320 234 206 0 chrX 108636324 108636431 -53963499 + MIR SINE MIR 90 218 -44 1188 234 93 35 chrX 108636481 108636913 -53963017 - MLT1C LTR MaLR 0 467 11 409 326 61 50 chrX 108637178 108637619 -53962311 - L1M4 LINE L1 -3143 3003 2558 635 230 31 28 chrX 108637628 108637873 -53962057 + MLT1J LTR MaLR 4 291 -220 410 254 0 32 chrX 108637907 108638033 -53961897 + MLT1J LTR MaLR 390 511 0 327 359 53 10 chrX 108638033 108638242 -53961688 - L1M4 LINE L1 -3591 2555 2338 436 287 92 6 chrX 108638275 108638439 -53961491 + L2 LINE L2 1798 1975 -1339 500 324 103 75 chrX 108638480 108639342 -53960588 + L2 LINE L2 2265 3178 -94 3703 32 0 0 chrX 108639342 108639816 -53960114 - L1PA4 LINE L1 -804 5342 4869 6920 27 0 0 chrX 108639816 108640617 -53959313 + L1PA4 LINE L1 5347 6153 -2 1706 191 0 0 chrX 108640951 108641224 -53958706 - AluJb SINE Alu -39 273 1 295 229 0 16 chrX 108641357 108641418 -53958512 + L2 LINE L2 3190 3249 -64 811 276 32 18 chrX 108642316 108642533 -53957397 - MIR SINE MIR -22 240 21 3281 333 116 31 chrX 108642537 108645065 -53954865 + L2 LINE L2 530 3271 -1 217 374 108 30 chrX 108645285 108645590 -53954340 - L2 LINE L2 -572 2742 2414 2179 120 45 28 chrX 108645628 108645986 -53953944 - THE1B LTR MaLR 0 364 1 9648 220 27 31 chrX 108646251 108649315 -53950615 + L1MB5 LINE L1 2261 5335 -1075 1218 53 0 0 chrX 108649315 108649467 -53950463 + L1PA3 LINE L1 6004 6155 0 9648 220 27 31 chrX 108649467 108650428 -53949502 + L1MB5 LINE L1 5335 6273 -137 781 158 0 8 chrX 108650428 108650561 -53949369 + FLAM_C SINE Alu 2 133 0 9648 220 27 31 chrX 108650561 108650698 -53949232 + L1MB5 LINE L1 6273 6409 -1 486 306 153 0 chrX 108650720 108650942 -53948988 - MIR SINE MIR -6 256 1 21 0 0 0 chrX 108651763 108651784 -53948146 + AT_rich Low_complexity Low_complexity 1 21 0 1173 153 10 5 chrX 108652867 108653070 -53946860 + MER20 DNA MER1_type 16 219 0 227 224 52 0 chrX 108655582 108655640 -53944290 + (CCCCG)n Simple_repeat Simple_repeat 2 62 0 537 16 0 0 chrX 108655717 108655779 -53944151 + (TC)n Simple_repeat Simple_repeat 1 62 0 225 0 0 0 chrX 108655778 108655803 -53944127 + (CA)n Simple_repeat Simple_repeat 1 25 0 * 263 214 14 0 chrX 108656158 108656228 -53943702 + CT-rich Low_complexity Low_complexity 1 71 0 420 20 0 0 chrX 108658137 108658186 -53941744 + (TG)n Simple_repeat Simple_repeat 2 50 0 372 326 61 30 chrX 108660036 108660168 -53939762 - MIR3 SINE MIR -33 175 40 195 162 0 0 chrX 108660636 108660673 -53939257 + (CA)n Simple_repeat Simple_repeat 2 38 0 475 280 153 0 chrX 108660976 108661133 -53938797 + MER5A DNA MER1_type 9 189 0 21 0 0 0 chrX 108661222 108661243 -53938687 + AT_rich Low_complexity Low_complexity 1 21 0 529 218 137 46 chrX 108661363 108661560 -53938370 + MIR SINE MIR 35 249 -13 1724 218 88 62 chrX 108662504 108663114 -53936816 - MLT1E2 LTR MaLR 0 626 1 549 282 14 14 chrX 108663160 108663327 -53936603 - MIR SINE MIR -63 145 16 184 236 77 99 chrX 108663960 108664193 -53935737 - L2 LINE L2 -479 2835 2608 536 83 0 0 chrX 108664193 108664265 -53935665 - L1PA4 LINE L1 -254 5901 5830 29 0 0 0 chrX 108664265 108664294 -53935636 + AT_rich Low_complexity Low_complexity 1 29 0 509 230 25 62 chrX 108664439 108664600 -53935330 + MIR SINE MIR 108 262 0 2248 108 0 0 chrX 108665008 108665317 -53934613 + AluSx SINE Alu 1 309 0 550 300 29 0 chrX 108666013 108666183 -53933747 - L2 LINE L2 -922 2392 2218 881 285 28 20 chrX 108666206 108666459 -53933471 - MIR SINE MIR -1 261 7 276 337 45 35 chrX 108666504 108666703 -53933227 - L2 LINE L2 -1152 2162 1962 1341 212 62 3 chrX 108666754 108667075 -53932855 + MER58B DNA MER1_type 1 340 -1 478 268 85 33 chrX 108667076 108667229 -53932701 + MIR SINE MIR 16 176 -86 1354 142 17 113 chrX 108667229 108667570 -53932360 - AluJb SINE Alu 0 323 12 431 295 0 0 chrX 108667579 108667684 -53932246 + MIR SINE MIR 158 262 0 713 252 131 9 chrX 108669280 108669494 -53930436 + MIR SINE MIR 7 246 -16 355 259 12 0 chrX 108669552 108669637 -53930293 + MIR SINE MIR 49 134 -128 257 351 97 8 chrX 108669736 108669870 -53930060 - MIR3 SINE MIR -58 150 5 437 281 30 30 chrX 108670531 108670695 -53929235 + MIR SINE MIR 94 257 -5 945 275 20 24 chrX 108671810 108672057 -53927873 - MIR SINE MIR -14 248 3 207 286 0 83 chrX 108672147 108672231 -53927699 + L2 LINE L2 3153 3229 -43 267 295 145 34 chrX 108672374 108672581 -53927349 - L2 LINE L2 -172 3100 2871 1592 170 75 3 chrX 108672687 108672969 -53926961 - AluSx SINE Alu -10 302 1 601 264 48 52 chrX 108673153 108673403 -53926527 - L2 LINE L2 -814 2500 2252 2417 62 3 16 chrX 108673478 108673785 -53926145 - AluY SINE Alu -8 303 1 212 258 227 31 chrX 108674256 108674353 -53925577 + MIR SINE MIR 80 195 -67 1301 83 0 11 chrX 108674619 108674800 -53925130 + AluY SINE Alu 133 311 0 188 311 0 0 chrX 108676047 108676092 -53923838 - L2 LINE L2 -6 3307 3263 861 215 122 25 chrX 108679551 108679788 -53920142 + MIR SINE MIR 1 260 -2 298 271 43 0 chrX 108679859 108679929 -53920001 + MIR3 SINE MIR 89 161 -47 486 236 20 54 chrX 108680668 108680816 -53919114 + MER5A DNA MER1_type 47 189 0 316 265 29 0 chrX 108681212 108681280 -53918650 - MIR SINE MIR -63 145 76 594 241 8 15 chrX 108681963 108682096 -53917834 - MIR3 SINE MIR -4 204 73 253 192 0 19 chrX 108682242 108682294 -53917636 + MER5B DNA MER1_type 1 51 -127 757 321 5 10 chrX 108682319 108682515 -53917415 + MER91A DNA MER1_type 1 195 -1 197 151 41 14 chrX 108682777 108682850 -53917080 + (TA)n Simple_repeat Simple_repeat 2 76 0 616 208 33 76 chrX 108682893 108683196 -53916734 - Charlie7 DNA MER1_type -132 2480 2191 1311 249 12 51 chrX 108683205 108683618 -53916312 - Charlie7 DNA MER1_type -2031 581 185 295 324 37 0 chrX 108683722 108683830 -53916100 - L2 LINE L2 -220 3052 2941 216 298 24 36 chrX 108683947 108684031 -53915899 + MER5B DNA MER1_type 53 135 -43 348 323 126 0 chrX 108685099 108685266 -53914664 - MIR SINE MIR -9 253 66 4664 177 26 12 chrX 108685603 108686964 -53912966 + L1MB2 LINE L1 4783 6171 0 265 302 60 0 chrX 108687267 108687383 -53912547 - LTR33A LTR ERVL -124 399 277 472 312 78 0 chrX 108687421 108687575 -53912355 - LTR33 LTR ERVL -324 197 32 189 322 68 0 chrX 108687618 108687677 -53912253 + MIR SINE MIR 47 109 -99 229 227 82 72 chrX 108687936 108688033 -53911897 + MIR3 SINE MIR 96 193 -15 243 0 0 0 chrX 108688368 108688395 -53911535 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2150 89 29 4 chrX 108688404 108688684 -53911246 - AluSx SINE Alu -25 287 1 301 179 11 105 chrX 108688685 108688780 -53911150 + MER103 DNA DNA 79 164 -2 707 99 0 0 chrX 108688935 108689026 -53910904 + FLAM_A SINE Alu 26 116 -26 209 98 24 0 chrX 108689031 108689072 -53910858 + (TA)n Simple_repeat Simple_repeat 2 43 0 264 122 0 0 chrX 108689122 108689163 -53910767 + (TG)n Simple_repeat Simple_repeat 2 42 0 227 257 224 46 chrX 108689415 108689567 -53910363 - MIR SINE MIR -51 211 33 318 264 58 19 chrX 108689746 108689901 -53910029 - L1ME4a LINE L1 0 6121 5961 1486 77 0 0 chrX 108690153 108690336 -53909594 - AluSc SINE Alu -5 304 122 310 295 12 18 chrX 108690346 108690512 -53909418 - L1ME4a LINE L1 -252 5869 5705 517 331 114 14 chrX 108690533 108690814 -53909116 - L2 LINE L2 -23 3290 2982 301 289 96 24 chrX 108690815 108690981 -53908949 - L1ME4a LINE L1 -556 5565 5388 953 192 10 36 chrX 108691090 108691283 -53908647 + MER5A DNA MER1_type 1 188 -1 478 290 40 8 chrX 108691436 108691560 -53908370 - L2 LINE L2 0 3272 3145 180 125 0 0 chrX 108692350 108692382 -53907548 + (A)n Simple_repeat Simple_repeat 1 32 0 1015 175 57 28 chrX 108692451 108692662 -53907268 - MER20 DNA MER1_type 0 219 3 1358 202 99 66 chrX 108693046 108693502 -53906428 - MLT1D LTR MaLR 0 505 35 360 302 16 23 chrX 108693533 108693675 -53906255 - MIR SINE MIR -68 140 35 325 255 10 39 chrX 108694064 108694166 -53905764 - MIR SINE MIR -74 188 90 854 245 51 20 chrX 108696949 108697202 -53902728 + MIR SINE MIR 2 262 0 1156 272 126 27 chrX 108697332 108697777 -53902153 + LTR16C LTR ERVL 1 489 -2 229 299 91 0 chrX 108697844 108697921 -53902009 - MIR SINE MIR -106 102 19 2465 67 0 29 chrX 108699588 108699903 -53900027 + AluY SINE Alu 1 306 -5 1319 301 70 33 chrX 108701831 108702586 -53897344 + L1MB5 LINE L1 2 784 -5758 200 163 23 0 chrX 108702596 108702639 -53897291 + (TA)n Simple_repeat Simple_repeat 1 44 0 2310 94 7 0 chrX 108702649 108702956 -53896974 + AluY SINE Alu 1 309 -2 1112 218 22 22 chrX 108703124 108703441 -53896489 + L1MB5 LINE L1 833 1149 -5393 883 259 23 41 chrX 108703446 108703887 -53896043 + L1MB5 LINE L1 3495 3927 -2717 506 221 25 25 chrX 108703904 108704067 -53895863 + L1MB5 LINE L1 4266 4428 -2216 * 3630 204 30 30 chrX 108704055 108704678 -53895252 + L1MB5 LINE L1 4764 5385 -1287 413 226 130 26 chrX 108704678 108704793 -53895137 - FLAM_A SINE Alu -6 127 1 3630 204 30 30 chrX 108704793 108705201 -53894729 + L1MB5 LINE L1 5385 5791 -881 3396 34 2 0 chrX 108705201 108705608 -53894322 - L1PA5 LINE L1 -5 6149 5742 3630 204 30 30 chrX 108705608 108706085 -53893845 + L1MB5 LINE L1 5791 6280 -392 2912 139 0 2 chrX 108706082 108706645 -53893285 - L1M2 LINE L1 -559 5741 5180 * 973 147 0 2 chrX 108706693 108706880 -53893050 + L1MB5 LINE L1 6280 6463 -199 201 182 0 0 chrX 108706880 108706935 -53892995 + (TA)n Simple_repeat Simple_repeat 2 56 0 694 306 70 12 chrX 108707492 108707734 -53892196 + MIR SINE MIR 7 262 0 762 260 73 0 chrX 108708187 108708379 -53891551 + MIR SINE MIR 51 256 -6 2344 78 10 0 chrX 108708453 108708748 -53891182 + AluSp SINE Alu 1 298 -15 4259 122 11 3 chrX 108708867 108709571 -53890359 + L1MA2 LINE L1 5438 6147 -157 5413 49 0 6 chrX 108709634 108710306 -53889624 + L1PA6 LINE L1 5487 6154 0 2457 46 0 0 chrX 108710782 108711063 -53888867 + AluY SINE Alu 1 281 -30 187 43 0 0 chrX 108711063 108711086 -53888844 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 206 128 26 0 chrX 108711271 108711310 -53888620 + (CA)n Simple_repeat Simple_repeat 1 40 0 280 0 0 0 chrX 108711618 108711649 -53888281 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 283 109 109 0 chrX 108711649 108711705 -53888225 - Alu SINE Alu -1 333 242 187 118 0 59 chrX 108712052 108712103 -53887827 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 3082 168 18 6 chrX 108712590 108713103 -53886827 + MER73 LTR ERVL 126 644 0 180 233 189 78 chrX 108713710 108713800 -53886130 - MIR SINE MIR -90 118 19 2080 192 25 61 chrX 108713940 108714413 -53885517 - MLT2B1 LTR ERVL -64 456 1 336 24 0 0 chrX 108715302 108715343 -53884587 + (A)n Simple_repeat Simple_repeat 1 41 0 2516 69 0 0 chrX 108715345 108715649 -53884281 + AluY SINE Alu 2 305 -6 557 236 16 16 chrX 108716044 108716171 -53883759 - L2 LINE L2 0 3313 3187 229 279 62 62 chrX 108716538 108716717 -53883213 - MIR SINE MIR -11 251 73 956 134 0 0 chrX 108718386 108718513 -53881417 + FLAM_C SINE Alu 2 128 -5 226 229 0 0 chrX 108718792 108718840 -53881090 + MIR SINE MIR 104 151 -57 2445 70 0 0 chrX 108718843 108719143 -53880787 + AluY SINE Alu 1 300 -11 2325 190 99 49 chrX 108719350 108719944 -53879986 + MLT1E3 LTR MaLR 1 624 0 369 298 97 0 chrX 108720278 108720392 -53879538 - L2 LINE L2 0 3313 3189 1325 167 24 84 chrX 108720392 108720727 -53879203 - MER33 DNA MER1_type 0 324 10 2416 77 0 3 chrX 108721265 108721565 -53878365 + AluSc SINE Alu 1 299 -10 716 291 47 5 chrX 108721591 108721804 -53878126 - MIR SINE MIR 0 262 41 252 0 0 0 chrX 108722189 108722217 -53877713 + (CA)n Simple_repeat Simple_repeat 2 29 0 706 209 82 44 chrX 108722987 108723059 -53876871 + MER5A DNA MER1_type 1 69 -120 766 207 0 15 chrX 108723059 108723194 -53876736 + FLAM_C SINE Alu 1 133 0 706 209 82 44 chrX 108723194 108723303 -53876627 + MER5A DNA MER1_type 69 189 0 1249 131 0 35 chrX 108723344 108723543 -53876387 + AluSg/x SINE Alu 108 299 -13 1056 198 6 6 chrX 108723586 108723763 -53876167 - MER5B DNA MER1_type 0 178 2 293 231 0 0 chrX 108723913 108723965 -53875965 - L2 LINE L2 -11 3261 3210 1035 182 5 31 chrX 108724398 108724590 -53875340 + MER5A DNA MER1_type 1 187 -2 203 262 0 0 chrX 108724856 108724898 -53875032 + L2 LINE L2 3227 3268 -4 479 270 13 57 chrX 108724948 108725107 -53874823 + MIR3 SINE MIR 36 187 -21 2204 110 0 3 chrX 108725126 108725451 -53874479 + AluSx SINE Alu 1 324 0 530 231 89 30 chrX 108725846 108726015 -53873915 + MIR SINE MIR 11 189 -73 255 125 0 0 chrX 108726169 108726209 -53873721 + (A)n Simple_repeat Simple_repeat 1 40 0 294 237 40 0 chrX 108726273 108726349 -53873581 + MER116 DNA Mariner 2 80 0 1647 155 68 16 chrX 108726462 108726771 -53873159 + MER44D DNA MER2_type 1 595 -14 382 240 0 20 chrX 108727691 108727791 -53872139 - MIR SINE MIR -5 257 160 486 207 0 0 chrX 108727791 108727873 -53872057 + Tigger3(Golem) DNA MER2_type 1 82 -2947 * 1746 151 0 52 chrX 108727871 108728196 -53871734 + Tigger3(Golem) DNA MER2_type 2721 3028 -1 622 167 18 0 chrX 108728196 108728310 -53871620 - MIR SINE MIR -101 161 46 361 260 87 6 chrX 108728337 108728471 -53871459 - MIR SINE MIR -58 150 14 183 250 0 0 chrX 108728518 108728558 -53871372 - MIR SINE MIR -220 42 3 2245 32 0 0 chrX 108728574 108728822 -53871108 - L1PA5 LINE L1 -5 6149 5902 608 243 116 0 chrX 108729750 108729923 -53870007 - MIR SINE MIR -12 250 58 2435 72 0 29 chrX 108729962 108730268 -53869662 - AluY SINE Alu -14 297 1 826 182 103 24 chrX 108731571 108731736 -53868194 + MER45A DNA AcHobo 1 178 0 197 313 25 25 chrX 108731815 108731895 -53868035 + L2 LINE L2 2743 2822 -492 924 246 15 57 chrX 108731969 108732233 -53867697 + MIR SINE MIR 8 260 -2 482 274 8 8 chrX 108732966 108733090 -53866840 + MER5B DNA MER1_type 1 124 -54 2652 82 20 6 chrX 108733102 108733455 -53866475 - L1PA13 LINE L1 0 6163 5806 613 146 0 0 chrX 108733455 108733551 -53866379 + L1P4 LINE L1 5639 5734 -429 223 238 0 0 chrX 108733566 108733608 -53866322 - MER5B DNA MER1_type -131 47 6 764 241 53 0 chrX 108733881 108734051 -53865879 - MER5A DNA MER1_type 0 189 11 589 314 64 21 chrX 108734379 108734615 -53865315 + MIR SINE MIR 15 260 -2 367 326 21 21 chrX 108734717 108734861 -53865069 + L2 LINE L2 2667 2810 -504 412 234 165 36 chrX 108734862 108735061 -53864869 + MER20B DNA MER1_type 1 215 -4 615 325 79 76 chrX 108735073 108735492 -53864438 + L2 LINE L2 2828 3247 -25 727 157 0 26 chrX 108736122 108736237 -53863693 + FLAM_A SINE Alu 1 112 -30 965 240 132 83 chrX 108736271 108736679 -53863251 - L2 LINE L2 -427 2887 2460 569 146 0 31 chrX 108736677 108736773 -53863157 - L2 LINE L2 0 3313 3221 * 1954 148 0 3 chrX 108736797 108737095 -53862835 - AluSx SINE Alu -10 302 6 857 241 78 12 chrX 108737118 108737363 -53862567 - MIR SINE MIR 0 262 2 331 167 33 0 chrX 108737382 108737442 -53862488 - tRNA-Glu-GAA tRNA tRNA -3 72 11 255 192 0 0 chrX 108737442 108737494 -53862436 - L2 LINE L2 -854 2460 2409 506 316 59 5 chrX 108737902 108738089 -53861841 - MIR SINE MIR -43 219 23 227 296 52 52 chrX 108738462 108738577 -53861353 - MIR SINE MIR 0 262 148 23 0 0 0 chrX 108738579 108738602 -53861328 + AT_rich Low_complexity Low_complexity 1 23 0 2243 94 0 0 chrX 108738608 108738894 -53861036 - AluSx SINE Alu -26 286 1 2936 134 2 11 chrX 108738923 108739385 -53860545 + L1MA4 LINE L1 5618 6075 -225 1913 78 0 0 chrX 108739385 108739652 -53860278 + L1PA8 LINE L1 5906 6172 0 251 203 0 16 chrX 108739652 108739716 -53860214 + L1MA5 LINE L1 6061 6123 -177 744 217 61 39 chrX 108739723 108739759 -53860171 - MER8 DNA MER2_type -53 186 152 1137 225 72 9 chrX 108739759 108739981 -53859949 + MER8 DNA MER2_type 4 239 0 744 217 61 39 chrX 108739981 108740124 -53859806 - MER8 DNA MER2_type -87 152 3 977 119 10 90 chrX 108740124 108740325 -53859605 + L1MA4 LINE L1 6116 6300 0 603 141 0 0 chrX 108740332 108740417 -53859513 + L1PA6 LINE L1 14 98 -6048 32555 69 4 17 chrX 108740417 108741740 -53858190 + L1PA6 LINE L1 989 2327 -3827 252 0 0 0 chrX 108741740 108741768 -53858162 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 32555 69 4 17 chrX 108741768 108745675 -53854255 + L1PA6 LINE L1 2327 6153 -1 1826 135 19 0 chrX 108745693 108745989 -53853941 + AluSx SINE Alu 14 314 0 314 254 153 8 chrX 108746002 108746120 -53853810 - MIR SINE MIR -115 147 13 836 130 52 19 chrX 108746202 108746356 -53853574 - L1MA10 LINE L1 -5 6329 6171 2094 129 0 0 chrX 108748155 108748442 -53851488 - AluSx SINE Alu -25 287 1 243 323 0 15 chrX 108748444 108748509 -53851421 - L3 LINE CR1 -3 1574 1511 296 222 135 17 chrX 108748698 108748914 -53851016 - L1ME2 LINE L1 -212 5952 5703 411 269 199 0 chrX 108749527 108749668 -53850262 - MIR SINE MIR -6 256 88 211 342 35 44 chrX 108749678 108749792 -53850138 - L2 LINE L2 0 3272 3160 250 302 12 47 chrX 108749882 108749968 -53849962 - L2 LINE L2 -2 3311 3229 291 179 54 0 chrX 108750465 108750521 -53849409 + MER63C DNA MER1_type 1 59 -871 1086 196 16 18 chrX 108750547 108750839 -53849091 + MLT2B1 LTR ERVL 2 288 -126 2248 153 75 61 chrX 108750845 108751355 -53848575 + L1MA9 LINE L1 5758 6274 -38 23167 176 51 5 chrX 108751373 108755370 -53844560 + ERVL-B1-B1 LTR ERVL 103 4284 -1480 8301 148 31 6 chrX 108755364 108756340 -53843590 + ERVL-B1-B1 LTR ERVL 4439 5456 -308 * 2074 148 127 21 chrX 108756340 108756726 -53843204 - MSTA LTR MaLR 0 428 2 8301 148 31 6 chrX 108756726 108757035 -53842895 + ERVL-B1-B1 LTR ERVL 5456 5756 -8 2060 208 10 67 chrX 108757036 108757542 -53842388 + MLT2B1 LTR ERVL 1 477 -43 232 266 0 0 chrX 108757545 108757609 -53842321 + (TA)n Simple_repeat Simple_repeat 2 65 0 189 0 0 0 chrX 108757632 108757653 -53842277 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 281 26 26 0 chrX 108757652 108757690 -53842240 + (TA)n Simple_repeat Simple_repeat 1 39 0 1762 190 41 0 chrX 108757732 108758100 -53841830 + MER63C DNA MER1_type 63 445 -485 3303 222 38 23 chrX 108758100 108759501 -53840429 - L1ME1 LINE L1 -5 6161 4738 738 278 0 0 chrX 108759500 108759676 -53840254 - L1ME1 LINE L1 -1964 4182 4007 * 1242 181 22 18 chrX 108759676 108759952 -53839978 - L1MA9 LINE L1 -6 6306 6030 618 225 22 55 chrX 108759954 108760136 -53839794 - L1ME2 LINE L1 -445 5721 5546 * 6664 182 40 9 chrX 108760115 108762108 -53837822 - L1MA9 LINE L1 -276 6036 4106 201 94 0 0 chrX 108762108 108762140 -53837790 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1581 190 0 44 chrX 108762142 108762437 -53837493 - AluJo SINE Alu -30 282 1 6664 182 40 9 chrX 108762437 108762640 -53837290 - L1MA9 LINE L1 -2206 4106 3770 2213 82 0 26 chrX 108762658 108762963 -53836967 - AluY SINE Alu -14 297 1 1390 38 0 6 chrX 108762980 108763140 -53836790 + L1PA6 LINE L1 5984 6142 -12 3463 250 58 51 chrX 108763149 108764533 -53835397 - L1MEc LINE L1 -5504 1038 40 1044 187 28 13 chrX 108764538 108764954 -53834976 + MER63C DNA MER1_type 460 931 0 613 226 18 77 chrX 108767412 108767500 -53832430 - MIR3 SINE MIR -18 190 115 2474 30 7 30 chrX 108767500 108767802 -53832128 + AluY SINE Alu 1 295 -16 613 226 18 77 chrX 108767802 108767881 -53832049 - MIR3 SINE MIR -93 115 33 230 319 48 69 chrX 108768418 108768606 -53831324 + L2 LINE L2 2400 2583 -731 2155 114 38 38 chrX 108769175 108769516 -53830414 - Tigger1 DNA MER2_type 0 2418 2078 338 69 42 28 chrX 108769516 108769588 -53830342 + T-rich Low_complexity Low_complexity 1 73 0 44896 40 2 1 chrX 108769588 108775739 -53824191 - L1PA4 LINE L1 -1 6154 1 2794 93 10 3 chrX 108775739 108776127 -53823803 - Tigger1 DNA MER2_type -330 2088 1698 208 188 141 35 chrX 108776235 108776320 -53823610 - MIR3 SINE MIR 0 208 115 1742 169 85 11 chrX 108776340 108776718 -53823212 - L1PB4 LINE L1 0 6156 5751 603 274 25 58 chrX 108776771 108777048 -53822882 + L1ME LINE L1 5547 5814 -307 602 170 1 7 chrX 108777353 108777467 -53822463 - L1MC4 LINE L1 0 8042 7815 2032 122 25 0 chrX 108777468 108777746 -53822184 + AluSg SINE Alu 1 285 -25 41 0 0 0 chrX 108777746 108777787 -53822143 + AT_rich Low_complexity Low_complexity 1 41 0 217 333 12 12 chrX 108778371 108778404 -53821526 - L3 LINE CR1 -15 1562 1530 1226 174 41 0 chrX 108778404 108778600 -53821330 + MER3 DNA MER1_type 3 206 -3 217 333 12 12 chrX 108778600 108778647 -53821283 - L3 LINE CR1 -46 1531 1482 267 238 325 8 chrX 108778719 108778845 -53821085 + MER5B DNA MER1_type 13 178 0 2021 205 68 16 chrX 108779023 108779888 -53820042 - L1M4c LINE L1 -4022 2362 1356 233 223 36 116 chrX 108779927 108780039 -53819891 - MLT1L LTR MaLR -461 154 52 631 297 97 58 chrX 108780082 108780493 -53819437 - L2 LINE L2 -8 3305 2879 584 350 19 56 chrX 108780520 108780880 -53819050 + L2 LINE L2 2921 3267 -5 854 260 49 22 chrX 108780952 108781175 -53818755 + MIR SINE MIR 13 241 -21 1130 317 106 17 chrX 108781356 108781839 -53818091 + L3 LINE CR1 1028 1553 -24 186 292 0 62 chrX 108783495 108783560 -53816370 + L2 LINE L2 3234 3294 -19 269 176 0 39 chrX 108783676 108783727 -53816203 + L2 LINE L2 3193 3241 -31 250 136 127 127 chrX 108784197 108784315 -53815615 + L2 LINE L2 3155 3272 0 220 302 105 0 chrX 108785021 108785107 -53814823 + MIR SINE MIR 112 206 -56 256 232 146 0 chrX 108785698 108785780 -53814150 - MIR SINE MIR -20 242 149 208 205 0 0 chrX 108785781 108785820 -53814110 + L2 LINE L2 3216 3254 -18 482 280 51 8 chrX 108785877 108785995 -53813935 - MIR SINE MIR -137 125 3 333 337 29 45 chrX 108787080 108787265 -53812665 + L2 LINE L2 2424 2606 -708 1092 144 86 6 chrX 108787265 108787439 -53812491 + MER5A DNA MER1_type 2 189 0 333 337 29 45 chrX 108787439 108787496 -53812434 + L2 LINE L2 2606 2662 -652 990 201 70 33 chrX 108787606 108787906 -53812024 - LTR48 LTR ERV1 -17 770 406 6297 124 0 21 chrX 108787915 108788238 -53811692 - L1PB1 LINE L1 -7 6144 5816 2438 71 0 3 chrX 108788238 108788535 -53811395 - AluY SINE Alu -15 296 1 6297 124 0 21 chrX 108788535 108789498 -53810432 - L1PB1 LINE L1 -335 5816 4883 1744 182 86 35 chrX 108789502 108789823 -53810107 - LTR48 LTR ERV1 -371 416 70 2214 112 3 3 chrX 108789823 108790127 -53809803 - AluSx SINE Alu -7 305 2 1744 182 86 35 chrX 108790127 108790201 -53809729 - LTR48 LTR ERV1 -717 70 1 334 296 23 30 chrX 108790696 108790828 -53809102 + L2 LINE L2 3183 3313 0 * 791 289 12 35 chrX 108790811 108790946 -53808984 - MIR SINE MIR -11 251 123 1927 144 26 10 chrX 108790946 108791252 -53808678 + AluSx SINE Alu 1 311 -1 791 289 12 35 chrX 108791252 108791372 -53808558 - MIR SINE MIR -139 123 2 222 279 13 63 chrX 108791824 108791903 -53808027 + L2 LINE L2 3197 3271 -1 263 241 0 0 chrX 108793055 108793109 -53806821 + (TG)n Simple_repeat Simple_repeat 2 55 0 341 241 28 28 chrX 108793453 108793561 -53806369 + MER5A DNA MER1_type 45 152 -37 1986 167 37 83 chrX 108793595 108794079 -53805851 - MLT1C LTR MaLR 0 467 6 324 0 0 0 chrX 108794238 108794274 -53805656 + (TC)n Simple_repeat Simple_repeat 1 36 0 * 333 0 0 0 chrX 108794273 108794310 -53805620 + (CA)n Simple_repeat Simple_repeat 1 37 0 436 245 34 27 chrX 108794416 108794561 -53805369 + MIR SINE MIR 62 202 -60 716 301 18 2 chrX 108795330 108795565 -53804365 + MIR SINE MIR 21 262 0 248 311 0 0 chrX 108795681 108795755 -53804175 + MIR SINE MIR 81 154 -108 2066 256 80 38 chrX 108796337 108797031 -53802899 + L1MA3 LINE L1 2 1075 -6134 802 261 33 5 chrX 108797062 108797273 -53802657 + L1MA3 LINE L1 1739 1955 -5254 3414 174 59 23 chrX 108797273 108797861 -53802069 - MER49 LTR ERV1 -5 918 301 2326 94 0 3 chrX 108797861 108798169 -53801761 - AluY SINE Alu -4 307 1 3414 174 59 23 chrX 108798169 108798263 -53801667 - MER49 LTR ERV1 -622 301 212 280 122 91 0 chrX 108798251 108798311 -53801619 + AluS SINE Alu 221 278 -24 * 12639 162 23 11 chrX 108798316 108799765 -53800165 + L1MA3 LINE L1 3857 5286 -2081 15487 24 1 0 chrX 108799765 108802234 -53797696 + L1PA3 LINE L1 3687 6155 0 12639 162 23 11 chrX 108802234 108804248 -53795682 + L1MA3 LINE L1 5286 7367 0 1379 198 45 3 chrX 108804253 108804314 -53795616 + L1 LINE L1 6043 6100 -1108 252 59 0 0 chrX 108804314 108804348 -53795582 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1379 198 45 3 chrX 108804348 108804600 -53795330 + L1 LINE L1 6100 6369 -839 501 88 38 0 chrX 108804605 108804685 -53795245 + L1MA6 LINE L1 6218 6300 0 31 0 0 0 chrX 108804685 108804716 -53795214 + AT_rich Low_complexity Low_complexity 1 31 0 192 97 0 0 chrX 108804980 108805011 -53794919 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 882 153 41 24 chrX 108806181 108806351 -53793579 - L1MA10 LINE L1 -3 6331 6159 743 296 5 5 chrX 108806631 108806837 -53793093 - MIR SINE MIR 0 262 57 1478 159 0 115 chrX 108807958 108808126 -53791804 - AluJo SINE Alu -11 301 190 866 61 17 17 chrX 108808126 108808241 -53791689 - L1PA7 LINE L1 -1 6153 6039 1478 159 0 115 chrX 108808241 108808412 -53791518 - AluJo SINE Alu -122 190 1 379 272 117 0 chrX 108808561 108808664 -53791266 + L3 LINE CR1 1453 1567 -10 262 340 90 27 chrX 108808716 108808904 -53791026 + MIR SINE MIR 50 249 -13 978 187 14 38 chrX 108811282 108811491 -53788439 + MER20 DNA MER1_type 16 219 0 830 296 75 8 chrX 108811733 108811973 -53787957 + MIR SINE MIR 4 259 -3 696 218 128 21 chrX 108812042 108812230 -53787700 + MER3 DNA MER1_type 1 208 -1 1032 201 10 24 chrX 108812492 108812701 -53787229 + MER20 DNA MER1_type 9 214 -5 211 326 51 20 chrX 108812714 108812812 -53787118 - L3b LINE CR1 -82 1501 1401 208 328 0 16 chrX 108813355 108813416 -53786514 - L3b LINE CR1 -221 1362 1303 884 242 39 17 chrX 108815438 108815669 -53784261 + MIR SINE MIR 9 244 -18 532 149 18 44 chrX 108817101 108817215 -53782715 - LTR37A LTR ERV1 0 426 316 708 217 43 109 chrX 108817220 108817450 -53782480 + MER58A DNA MER1_type 1 215 -9 2365 96 0 0 chrX 108818284 108818585 -53781345 - AluSx SINE Alu -11 301 1 272 277 94 75 chrX 108818614 108818654 -53781276 - MIR SINE MIR -1 261 223 1724 98 31 9 chrX 108818654 108818879 -53781051 - MER30 DNA MER1_type 0 230 1 272 277 94 75 chrX 108818879 108818997 -53780933 - MIR SINE MIR -39 223 100 709 219 23 0 chrX 108819039 108819167 -53780763 - LTR12 LTR ERV1 -232 482 352 380 135 22 18 chrX 108819170 108819262 -53780668 - LTR30 LTR ERV1 -108 681 552 733 103 0 131 chrX 108819262 108819407 -53780523 - LTR12 LTR ERV1 -457 257 132 236 250 0 0 chrX 108819420 108819472 -53780458 - LTR30 LTR ERV1 -670 52 1 702 322 115 53 chrX 108819525 108820540 -53779390 + L2 LINE L2 583 1660 -1654 579 324 183 19 chrX 108820877 108821285 -53778645 + L2 LINE L2 2183 2715 -599 1081 206 5 33 chrX 108821285 108821499 -53778431 - MER63A DNA MER1_type -2 208 1 579 324 183 19 chrX 108821499 108821668 -53778262 + L2 LINE L2 2715 2855 -459 677 262 114 8 chrX 108821697 108821934 -53777996 + Charlie8 DNA MER1_type 4 265 -2152 1925 153 13 16 chrX 108822419 108822611 -53777319 - AluJb SINE Alu 0 312 120 207 0 0 0 chrX 108822611 108822634 -53777296 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1925 153 13 16 chrX 108822634 108822754 -53777176 - AluJb SINE Alu -192 120 1 395 257 71 44 chrX 108822800 108822913 -53777017 - L2 LINE L2 -20 3252 3137 204 225 0 0 chrX 108823441 108823481 -53776449 + GA-rich Low_complexity Low_complexity 4 43 0 227 79 26 0 chrX 108823496 108823534 -53776396 + (GA)n Simple_repeat Simple_repeat 1 39 0 2490 63 0 0 chrX 108824598 108824898 -53775032 - AluY SINE Alu -10 301 2 1003 240 77 0 chrX 108825402 108825623 -53774307 + MIR SINE MIR 21 258 -4 384 246 236 0 chrX 108826502 108826612 -53773318 - L2 LINE L2 0 3272 3137 485 271 136 20 chrX 108827085 108827284 -53772646 + MIR SINE MIR 20 241 -21 2202 110 0 0 chrX 108827746 108828037 -53771893 + AluSx SINE Alu 1 291 -21 657 138 28 0 chrX 108828994 108829103 -53770827 - L1MB4 LINE L1 -1 6179 6068 1415 142 21 142 chrX 108829206 108829576 -53770354 - AluYb8 SINE Alu 0 330 1 814 152 0 97 chrX 108829578 108829723 -53770207 - AluJo/FLAM SINE Alu -171 131 1 2119 122 7 0 chrX 108830932 108831228 -53768702 - AluSx SINE Alu -9 303 6 2088 118 7 3 chrX 108832201 108832505 -53767425 - AluSq SINE Alu -8 305 1 2626 55 0 3 chrX 108832633 108832945 -53766985 - AluY SINE Alu 0 311 1 330 26 0 0 chrX 108833194 108833233 -53766697 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 3686 76 11 11 chrX 108833776 108834251 -53765679 - L1PA10 LINE L1 -8 6160 5686 180 282 165 68 chrX 108834301 108834507 -53765423 - MIR SINE MIR -34 228 3 520 328 51 69 chrX 108839649 108840039 -53759891 + L2 LINE L2 2930 3312 -1 192 254 155 0 chrX 108840074 108840145 -53759785 - L2 LINE L2 -2 3311 3230 3865 190 36 59 chrX 108840145 108840300 -53759630 + L1ME2 LINE L1 5169 5326 -838 234 0 0 0 chrX 108840300 108840326 -53759604 + (TA)n Simple_repeat Simple_repeat 1 26 0 3865 190 36 59 chrX 108840326 108841200 -53758730 + L1ME2 LINE L1 5326 6164 0 509 243 138 48 chrX 108841282 108841340 -53758590 - MIR SINE MIR -11 251 200 1836 138 128 0 chrX 108841340 108841660 -53758270 - MER46B DNA MER2_type 0 236 1 509 243 138 48 chrX 108841660 108841811 -53758119 - MIR SINE MIR -62 200 23 555 231 46 6 chrX 108842704 108842877 -53757053 + L1ME3 LINE L1 4630 4809 -1337 1802 223 51 23 chrX 108842880 108843844 -53756086 + L1ME3 LINE L1 4957 6162 0 535 306 175 0 chrX 108845499 108845682 -53754248 + MIR SINE MIR 47 261 -1 228 342 35 9 chrX 108846579 108846693 -53753237 - L3b LINE CR1 -101 1482 1366 437 261 52 33 chrX 108846696 108846731 -53753199 - MIR SINE MIR -56 206 173 2220 102 0 25 chrX 108846731 108847046 -53752884 + AluSg SINE Alu 1 307 -3 437 261 52 33 chrX 108847046 108847163 -53752767 - MIR SINE MIR -89 173 51 5440 81 7 3 chrX 108847171 108847860 -53752070 + L1PA13 LINE L1 5465 6156 -7 21 0 0 0 chrX 108847860 108847881 -53752049 + AT_rich Low_complexity Low_complexity 1 21 0 1902 141 35 49 chrX 108848004 108848144 -53751786 + MER2 DNA MER2_type 4 145 -200 1303 97 163 5 chrX 108848144 108848340 -53751590 + MER30 DNA MER1_type 4 230 0 1902 141 35 49 chrX 108848340 108848546 -53751384 + MER2 DNA MER2_type 145 345 0 307 232 14 0 chrX 108849269 108849338 -53750592 + L2 LINE L2 1865 1934 -1380 1881 268 123 49 chrX 108849338 108849854 -53750076 + L2 LINE L2 2091 2568 -745 2299 82 0 63 chrX 108849854 108850185 -53749745 - AluSg SINE Alu 0 310 1 1881 268 123 49 chrX 108850185 108850813 -53749117 + L2 LINE L2 2568 3307 -6 372 256 84 79 chrX 108850828 108851031 -53748899 - MIR SINE MIR 0 262 59 2183 110 7 0 chrX 108852287 108852579 -53747351 - AluSq SINE Alu -18 295 2 202 291 179 17 chrX 108852604 108852721 -53747209 + MIR SINE MIR 22 157 -105 22 0 0 0 chrX 108853013 108853035 -53746895 + AT_rich Low_complexity Low_complexity 1 22 0 464 277 27 9 chrX 108853044 108853156 -53746774 + MER81 DNA DNA 1 114 0 2353 103 0 0 chrX 108855473 108855774 -53744156 - AluSx SINE Alu -11 301 1 2153 123 0 10 chrX 108857102 108857469 -53742461 + AluSc SINE Alu 1 309 0 492 287 8 8 chrX 108858217 108858339 -53741591 - L2 LINE L2 0 3313 3192 555 244 53 62 chrX 108858700 108858909 -53741021 + MIR SINE MIR 7 213 -49 910 232 26 0 chrX 108859882 108860072 -53739858 + MER20 DNA MER1_type 25 219 0 200 365 0 14 chrX 108860126 108860200 -53739730 - L2 LINE L2 -62 3210 3138 432 104 65 0 chrX 108860325 108860402 -53739528 - L1MA7 LINE L1 0 6291 6210 195 328 0 0 chrX 108860416 108860477 -53739453 - L2 LINE L2 -208 3064 3004 433 230 46 0 chrX 108861090 108861177 -53738753 - MER81 DNA DNA -20 94 4 310 331 53 79 chrX 108861283 108861549 -53738381 + L2 LINE L2 2462 2720 -594 220 125 25 0 chrX 108862650 108862690 -53737240 + (CA)n Simple_repeat Simple_repeat 2 42 0 279 79 0 0 chrX 108862984 108863022 -53736908 + (A)n Simple_repeat Simple_repeat 1 38 0 932 206 26 44 chrX 108863368 108863596 -53736334 - MIR SINE MIR -5 257 34 527 249 191 53 chrX 108863613 108863636 -53736294 + MIR SINE MIR 1 19 -243 1058 229 57 0 chrX 108863636 108863846 -53736084 - MER58A DNA MER1_type 0 224 3 527 249 191 53 chrX 108863846 108864031 -53735899 + MIR SINE MIR 19 238 -24 302 228 0 0 chrX 108864400 108864457 -53735473 + L2 LINE L2 3200 3256 -16 5312 134 21 5 chrX 108864758 108864772 -53735158 - L1PA16 LINE L1 -2 6164 6152 2275 112 0 3 chrX 108864772 108865077 -53734853 - AluSq SINE Alu -9 304 1 5312 134 21 5 chrX 108865077 108865887 -53734043 - L1PA16 LINE L1 -14 6152 5327 2679 149 38 7 chrX 108866368 108866811 -53733119 - MSTB2 LTR MaLR 0 457 1 830 206 81 40 chrX 108866972 108867195 -53732735 - MIR SINE MIR -24 238 7 207 337 83 62 chrX 108867299 108867492 -53732438 - MIR SINE MIR -46 216 20 287 81 0 0 chrX 108867846 108867883 -53732047 + U1 snRNA snRNA 1 37 -128 * 1275 214 3 53 chrX 108867880 108868058 -53731872 + MER46C DNA MER2_type 31 187 -151 1015 144 21 11 chrX 108868058 108868245 -53731685 - MER53 DNA DNA 0 189 1 1275 214 3 53 chrX 108868245 108868388 -53731542 + MER46C DNA MER2_type 187 336 -2 191 213 16 82 chrX 108870469 108870530 -53729400 + MIR SINE MIR 206 262 0 449 209 157 0 chrX 108870532 108870647 -53729283 + MIR SINE MIR 101 233 -29 183 219 67 67 chrX 108871542 108871647 -53728283 + L2 LINE L2 3159 3263 -9 435 276 182 10 chrX 108872459 108872662 -53727268 + MIR SINE MIR 8 245 -17 364 330 0 19 chrX 108872819 108872922 -53727008 - L2 LINE L2 -2 3270 3170 2339 81 7 3 chrX 108872952 108873248 -53726682 + AluSc SINE Alu 1 297 -12 1585 153 25 92 chrX 108873257 108873583 -53726347 + AluSx SINE Alu 1 304 -8 1869 234 57 40 chrX 108873724 108874249 -53725681 + L1M4 LINE L1 14 547 -5995 * 3512 202 19 35 chrX 108874246 108874290 -53725640 + L1M4 LINE L1 4248 4291 -2353 2398 76 0 7 chrX 108874290 108874594 -53725336 + AluY SINE Alu 1 302 -9 3512 202 19 35 chrX 108874594 108875138 -53724792 + L1M4 LINE L1 4291 4822 -1822 1609 149 177 39 chrX 108875138 108875574 -53724356 + LTR54B LTR ERV1 1 496 -2 3512 202 19 35 chrX 108875574 108875819 -53724111 + L1M4 LINE L1 4822 5069 -1575 1243 198 52 0 chrX 108875830 108876078 -53723852 + L1M4 LINE L1 5341 5601 -1043 8266 198 41 47 chrX 108876970 108878370 -53721560 + LTR19B-int LTR ERV1 4440 5025 -1306 2348 49 3 3 chrX 108878370 108878678 -53721252 + AluY SINE Alu 1 308 0 8266 198 41 47 chrX 108878678 108879320 -53720610 + LTR19B-int LTR ERV1 5025 5669 -662 580 122 68 95 chrX 108879315 108879462 -53720468 + LTR19B-int LTR ERV1 4718 4860 -726 * 1213 92 6 6 chrX 108879466 108879629 -53720301 + LTR19B-int LTR ERV1 7556 7718 -1 3961 105 54 4 chrX 108879630 108880182 -53719748 + LTR19B LTR ERV1 1 580 0 1021 178 137 0 chrX 108880798 108880995 -53718935 + MER58A DNA MER1_type 1 224 0 853 288 60 48 chrX 108881026 108881446 -53718484 + L2 LINE L2 2301 2725 -589 851 225 59 5 chrX 108881463 108881650 -53718280 - MIR SINE MIR -5 257 61 1843 123 0 11 chrX 108881741 108882002 -53717928 - AluSx SINE Alu -12 300 43 333 0 0 0 chrX 108882002 108882039 -53717891 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1743 154 14 0 chrX 108882039 108882318 -53717612 - AluSx SINE Alu -29 283 1 574 263 46 110 chrX 108882369 108882741 -53717189 + L2 LINE L2 2818 3165 -107 749 214 92 15 chrX 108883176 108883372 -53716558 - MLT1J2 LTR MaLR -224 226 16 420 245 19 19 chrX 108884067 108884173 -53715757 - MER5B DNA MER1_type -70 108 3 22 0 0 0 chrX 108884240 108884262 -53715668 + AT_rich Low_complexity Low_complexity 1 22 0 423 256 277 0 chrX 108885381 108885518 -53714412 + MER5A DNA MER1_type 9 183 -6 537 311 71 40 chrX 108886545 108886867 -53713063 - L3 LINE CR1 -73 1504 1173 324 0 0 0 chrX 108887031 108887067 -53712863 + (CA)n Simple_repeat Simple_repeat 2 37 0 406 280 16 24 chrX 108888690 108888815 -53711115 + MIR3 SINE MIR 37 160 -48 609 253 183 32 chrX 108889032 108889218 -53710712 + MER58B DNA MER1_type 1 340 -1 456 231 60 49 chrX 108889580 108889734 -53710196 + MIR SINE MIR 16 169 -67 23 0 0 0 chrX 108891483 108891506 -53708424 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chrX 108892499 108892525 -53707405 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 189 74 0 0 chrX 108893313 108893340 -53706590 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2117 121 0 0 chrX 108893340 108893622 -53706308 - AluSx SINE Alu -30 282 1 2370 92 3 16 chrX 108893813 108894129 -53705801 + AluSp SINE Alu 1 312 -1 376 337 73 61 chrX 108894342 108894653 -53705277 + L2 LINE L2 2272 2578 -694 438 20 0 0 chrX 108894653 108894704 -53705226 + (CA)n Simple_repeat Simple_repeat 1 51 0 376 337 73 61 chrX 108894704 108895161 -53704769 + L2 LINE L2 2578 3051 -221 1005 189 16 11 chrX 108895420 108895611 -53704319 - L1MD2 LINE L1 -10 6349 6158 927 263 116 7 chrX 108895718 108896019 -53703911 - L3 LINE CR1 -609 968 635 2122 112 0 0 chrX 108896140 108896425 -53703505 + AluSx SINE Alu 1 285 -27 311 203 13 0 chrX 108896425 108896504 -53703426 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 * 405 81 0 0 chrX 108896497 108896559 -53703371 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 2100 141 0 0 chrX 108896567 108896866 -53703064 + AluSx SINE Alu 1 299 -13 828 295 29 12 chrX 108896987 108897228 -53702702 - MIR SINE MIR -3 259 15 312 277 142 28 chrX 108897315 108897456 -53702474 - L3 LINE CR1 -951 626 470 306 324 189 0 chrX 108897638 108897749 -53702181 - L2 LINE L2 -4 3268 3137 212 222 16 79 chrX 108897771 108897834 -53702096 - MIR SINE MIR -15 247 189 623 265 137 18 chrX 108897850 108898004 -53701926 + MIR SINE MIR 16 150 -112 1794 154 2 134 chrX 108898004 108898251 -53701679 - MER2 DNA MER2_type -1 343 166 1751 181 0 28 chrX 108898251 108898379 -53701551 + AluJo SINE Alu 1 131 -181 2501 66 0 0 chrX 108898379 108898681 -53701249 - AluY SINE Alu -1 310 9 1751 181 0 28 chrX 108898681 108898873 -53701057 + AluJo SINE Alu 131 312 0 1794 154 2 134 chrX 108898873 108899020 -53700910 - MER2 DNA MER2_type -178 166 1 623 265 137 18 chrX 108899020 108899084 -53700846 + MIR SINE MIR 150 260 -2 310 277 40 30 chrX 108899104 108899205 -53700725 - MIR SINE MIR -120 142 41 227 305 49 89 chrX 108899262 108899508 -53700422 - L2 LINE L2 -181 3091 2856 247 150 33 0 chrX 108900437 108900497 -53699433 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 1709 188 0 0 chrX 108900506 108900788 -53699142 - AluJo SINE Alu -30 282 1 187 216 0 0 chrX 108901020 108901057 -53698873 - L2 LINE L2 -10 3262 3226 849 250 146 37 chrX 108901794 108902122 -53697808 - L2 LINE L2 0 3313 2950 318 286 198 26 chrX 108902461 108902653 -53697277 + MIR SINE MIR 29 253 -9 323 237 35 79 chrX 108902783 108902872 -53697058 - MIR SINE MIR -141 121 37 1757 45 0 0 chrX 108902872 108903071 -53696859 - AluY SINE Alu -112 199 1 323 237 35 79 chrX 108903071 108903095 -53696835 - MIR SINE MIR -225 37 13 350 263 0 0 chrX 108903949 108904025 -53695905 + 7SK RNA RNA 5 80 -113 832 145 0 43 chrX 108904131 108904269 -53695661 - FLAM_C SINE Alu -1 132 1 271 238 0 0 chrX 108904777 108904840 -53695090 + L1MC4 LINE L1 6640 6702 -1340 412 293 88 29 chrX 108904891 108905096 -53694834 + L3b LINE CR1 1282 1498 -85 493 365 32 5 chrX 108905121 108905310 -53694620 + MIR3 SINE MIR 3 196 -12 216 246 18 18 chrX 108905325 108905382 -53694548 + L3 LINE CR1 1520 1576 -1 900 200 100 0 chrX 108907578 108907751 -53692179 + MLT1E2 LTR MaLR 51 190 -464 2047 177 33 14 chrX 108907751 108908119 -53691811 - THE1C LTR MaLR 0 375 1 10923 97 39 43 chrX 108908119 108909251 -53690679 - THE1C-int LTR MaLR 0 1580 454 2363 105 0 0 chrX 108909251 108909556 -53690374 - AluSg SINE Alu -5 305 1 10923 97 39 43 chrX 108909556 108910009 -53689921 - THE1C-int LTR MaLR -1126 454 1 2434 99 55 19 chrX 108910009 108910371 -53689559 - THE1C LTR MaLR 0 375 1 900 200 100 0 chrX 108910371 108910599 -53689331 + MLT1E2 LTR MaLR 189 521 -133 3377 230 55 30 chrX 108910599 108911443 -53688487 - L2 LINE L2 -424 2890 2026 286 353 12 0 chrX 108911476 108911561 -53688369 - MIR SINE MIR -171 91 6 457 226 75 48 chrX 108912388 108912534 -53687396 + MIR SINE MIR 3 152 -110 1134 219 106 109 chrX 108912550 108913020 -53686910 + LTR33A LTR ERVL 4 474 -49 1939 132 0 21 chrX 108913020 108913301 -53686629 + AluSx SINE Alu 1 275 -37 1173 72 6 17 chrX 108913305 108913485 -53686445 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1134 219 106 109 chrX 108913485 108913530 -53686400 + LTR33A LTR ERVL 477 522 -1 783 246 23 0 chrX 108914152 108914327 -53685603 - MIR SINE MIR -2 260 82 1937 156 3 0 chrX 108914327 108914629 -53685301 - AluJb SINE Alu -9 303 1 454 176 25 101 chrX 108915879 108915998 -53683932 - L2 LINE L2 -8 3305 3196 298 192 0 0 chrX 108916602 108916654 -53683276 - L1PA13 LINE L1 -5388 1399 1348 247 211 0 0 chrX 108917731 108917783 -53682147 + L2 LINE L2 3261 3312 -1 1425 202 93 3 chrX 108917886 108918198 -53681732 - MER58B DNA MER1_type 0 341 2 296 261 63 54 chrX 108918244 108918355 -53681575 + L2 LINE L2 3200 3311 -2 391 267 53 33 chrX 108918540 108918690 -53681240 - MIR SINE MIR -33 229 77 269 182 23 0 chrX 108919216 108919260 -53680670 - MER91B DNA MER1_type -130 60 16 528 355 16 5 chrX 108919471 108919660 -53680270 + MIR SINE MIR 1 191 -71 2421 90 3 0 chrX 108919674 108919985 -53679945 + AluSx SINE Alu 1 312 0 763 290 106 28 chrX 108920048 108920369 -53679561 - L2 LINE L2 0 3313 2968 404 250 135 47 chrX 108920758 108920906 -53679024 + MIR3 SINE MIR 9 137 -71 2327 90 3 0 chrX 108920954 108921254 -53678676 + AluSg SINE Alu 1 301 -9 1850 117 30 0 chrX 108922865 108923131 -53676799 - AluSx SINE Alu -38 274 1 505 243 21 37 chrX 108923170 108923359 -53676571 + MER5A DNA MER1_type 4 189 0 212 391 26 19 chrX 108923391 108923547 -53676383 + L2 LINE L2 2901 3057 -215 299 300 46 39 chrX 108924483 108924613 -53675317 + MER5A DNA MER1_type 56 186 -3 277 214 146 34 chrX 108925725 108925814 -53674116 + L2 LINE L2 3215 3313 0 482 275 111 16 chrX 108926768 108926957 -53672973 - MIR SINE MIR -6 256 50 183 42 0 0 chrX 108927134 108927158 -53672772 + (TG)n Simple_repeat Simple_repeat 1 24 0 2954 216 39 25 chrX 108927231 108928229 -53671701 - Charlie2a DNA MER1_type -8 2854 1843 509 277 0 15 chrX 108928235 108928365 -53671565 + MLT1E LTR MaLR 3 130 -463 2252 106 0 0 chrX 108928368 108928671 -53671259 + AluSg SINE Alu 4 306 -4 615 64 9 73 chrX 108928707 108928816 -53671114 + L1MA9 LINE L1 6072 6173 -139 * 18483 123 11 18 chrX 108928805 108930585 -53669345 + L1M1 LINE L1 1 1753 -5812 324 0 0 0 chrX 108930585 108930621 -53669309 + (CA)n Simple_repeat Simple_repeat 1 36 0 18483 123 11 18 chrX 108930621 108931801 -53668129 + L1M1 LINE L1 1753 2940 -4625 669 87 71 8 chrX 108931805 108931932 -53667998 + L1MA9 LINE L1 6159 6293 -19 1267 249 108 22 chrX 108931953 108932362 -53667568 + MLT1E LTR MaLR 113 556 -37 1125 190 30 91 chrX 108932371 108932627 -53667303 - Charlie2a DNA MER1_type -1021 1841 1571 1844 144 4 0 chrX 108932627 108932891 -53667039 + AluJb SINE Alu 23 287 -25 1125 190 30 91 chrX 108932891 108932904 -53667026 - Charlie2a DNA MER1_type -1291 1571 1559 243 0 0 0 chrX 108932904 108932931 -53666999 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 1125 190 30 91 chrX 108932931 108933054 -53666876 - Charlie2a DNA MER1_type -1303 1559 1472 14391 61 28 10 chrX 108933081 108935709 -53664221 + L1PA6 LINE L1 3507 6151 -3 207 114 0 0 chrX 108935712 108935747 -53664183 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 716 237 97 19 chrX 108935758 108936015 -53663915 - Charlie2b DNA MER1_type -2113 669 393 26 30 0 0 chrX 108936141 108936174 -53663756 + AT_rich Low_complexity Low_complexity 1 33 0 3534 195 44 21 chrX 108936176 108937629 -53662301 + L1MB7 LINE L1 4617 6100 -84 954 148 55 44 chrX 108937630 108937812 -53662118 - Tigger2 DNA MER2_type -1 2717 2534 2094 95 39 0 chrX 108937812 108938095 -53661835 - AluSx SINE Alu -18 294 1 813 145 0 0 chrX 108938095 108938212 -53661718 - AluSg SINE Alu -177 133 17 15058 123 37 7 chrX 108938213 108940681 -53659249 - Tigger2 DNA MER2_type -175 2543 1 252 213 13 0 chrX 108940681 108940756 -53659174 + L1MB7 LINE L1 6099 6174 -10 429 215 8 16 chrX 108940766 108940887 -53659043 + L1M4 LINE L1 5032 5151 -995 772 102 25 19 chrX 108940887 108941044 -53658886 - Charlie4a DNA MER1_type -92 416 259 3979 194 53 60 chrX 108941611 108943080 -53656850 + L1ME1 LINE L1 471 1875 -4771 1931 228 100 29 chrX 108943096 108943659 -53656271 + L1ME1 LINE L1 4289 4913 -1731 1768 135 83 49 chrX 108943659 108944008 -53655922 + MLT1A1 LTR MaLR 2 362 -3 1931 228 100 29 chrX 108944008 108944145 -53655785 + L1ME1 LINE L1 4913 5039 -1605 753 203 6 28 chrX 108944160 108944342 -53655588 + L1ME1 LINE L1 5181 5358 -1286 4417 167 26 7 chrX 108944351 108945223 -53654707 - L1MB7 LINE L1 -2 6182 5294 435 108 30 0 chrX 108945223 108945303 -53654627 + MSTA LTR MaLR 284 428 0 1881 323 34 20 chrX 108945416 108946091 -53653839 - ERVL LTR ERVL -310 5344 4686 5117 54 5 8 chrX 108946091 108946741 -53653189 - L1PA8 LINE L1 -4 6168 5521 1881 323 34 20 chrX 108946741 108947211 -53652719 - ERVL LTR ERVL -968 4686 4224 935 221 84 65 chrX 108947363 108947528 -53652402 - LTR16A LTR ERVL -72 378 218 2155 113 7 3 chrX 108947528 108947829 -53652101 - AluSx SINE Alu 0 312 11 935 221 84 65 chrX 108947829 108947984 -53651946 - LTR16A LTR ERVL -232 218 52 35628 88 12 7 chrX 108948008 108954122 -53645808 - L1PA6 LINE L1 -2 6152 12 1418 192 28 3 chrX 108954147 108954501 -53645429 - L1MB7 LINE L1 -869 5277 4915 3122 214 51 18 chrX 108954507 108955734 -53644196 + L1ME1 LINE L1 5349 6615 -49 315 0 0 0 chrX 108955736 108955771 -53644159 + (TG)n Simple_repeat Simple_repeat 2 36 0 442 215 50 6 chrX 108955771 108955886 -53644044 + L1ME1 LINE L1 6058 6331 -3 665 261 53 9 chrX 108956128 108956354 -53643576 - L1MC/D LINE L1 -2009 5799 5564 1062 118 0 7 chrX 108956680 108956832 -53643098 - AluSg/x SINE Alu -28 284 134 2173 119 0 0 chrX 108956832 108957134 -53642796 - AluSg SINE Alu -8 302 1 223 461 0 19 chrX 108957713 108957817 -53642113 - L2 LINE L2 -26 3246 3145 1336 170 12 21 chrX 108957842 108958083 -53641847 - MER8 DNA MER2_type 0 239 1 566 288 45 70 chrX 108958709 108958952 -53640978 + MIR SINE MIR 3 239 -23 1023 157 115 0 chrX 108960051 108960242 -53639688 + MER20 DNA MER1_type 6 218 -1 1585 53 5 10 chrX 108960267 108960473 -53639457 - L1PA7 LINE L1 0 6154 5950 842 290 90 45 chrX 108960534 108961080 -53638850 - L2 LINE L2 -18 3254 2686 201 208 21 0 chrX 108962418 108962466 -53637464 + T-rich Low_complexity Low_complexity 1 49 0 409 212 45 61 chrX 108964799 108964931 -53634999 - MIR3 SINE MIR -6 202 73 1992 136 14 0 chrX 108965846 108966141 -53633789 + AluSx SINE Alu 1 299 -13 22 0 0 0 chrX 108968056 108968078 -53631852 + AT_rich Low_complexity Low_complexity 1 22 0 1079 252 25 19 chrX 108968474 108968788 -53631142 - MARNA DNA Mariner -24 562 247 191 36 36 0 chrX 108968788 108968816 -53631114 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 536 269 0 6 chrX 108968944 108969100 -53630830 - L1ME1 LINE L1 -5 6161 6007 244 340 40 0 chrX 108969111 108969211 -53630719 + MARNA DNA Mariner 421 524 -62 21 36 0 0 chrX 108970784 108970812 -53629118 + AT_rich Low_complexity Low_complexity 1 28 0 5928 35 17 1 chrX 108971310 108972025 -53627905 + L1PA5 LINE L1 5429 6154 0 2815 185 134 36 chrX 108972032 108972874 -53627056 + L1ME2 LINE L1 5238 6154 -10 367 343 70 5 chrX 108972914 108973115 -53626815 + L1MC4 LINE L1 7828 8041 -1 2308 88 3 0 chrX 108973789 108974086 -53625844 + AluSp SINE Alu 1 298 -15 1191 148 83 0 chrX 108974798 108975015 -53624915 - MER46A DNA MER2_type -1 235 1 25 31 0 0 chrX 108975034 108975066 -53624864 + AT_rich Low_complexity Low_complexity 1 32 0 3897 91 63 36 chrX 108976980 108977616 -53622314 + MER39B LTR ERV1 1 653 0 605 126 11 0 chrX 108979665 108979760 -53620170 - AluS SINE Alu -217 96 1 3653 215 104 11 chrX 108979764 108980714 -53619216 - Charlie1a DNA MER1_type -416 1039 1 321 194 206 62 chrX 108981315 108981475 -53618455 + L1ME4a LINE L1 5771 5953 -168 16560 88 25 11 chrX 108982154 108985342 -53614588 - L1PA7 LINE L1 0 6154 2924 2371 94 0 0 chrX 108985862 108986161 -53613769 + AluSx SINE Alu 1 299 -13 342 149 113 33 chrX 108986976 108987075 -53612855 + L1MB7 LINE L1 5665 5771 -393 883 154 13 114 chrX 108987083 108987211 -53612719 - Tigger1 DNA MER2_type 0 2418 2321 2329 97 0 0 chrX 108987211 108987511 -53612419 + AluSc SINE Alu 1 300 -9 883 154 13 114 chrX 108987511 108987609 -53612321 - Tigger1 DNA MER2_type -97 2321 2215 2092 103 7 3 chrX 108987609 108987945 -53611985 + AluSx SINE Alu 1 337 0 738 182 0 63 chrX 108987992 108988135 -53611795 - Tigger1 DNA MER2_type -2282 136 3 1132 190 69 4 chrX 108988137 108988384 -53611546 + L1MB7 LINE L1 5782 6044 -140 208 401 0 7 chrX 108988577 108988714 -53611216 - L2 LINE L2 -614 2700 2565 1657 248 117 39 chrX 108988768 108989462 -53610468 + L1ME2 LINE L1 4309 5135 -1011 2062 130 0 16 chrX 108989462 108989777 -53610153 - AluSx SINE Alu -2 310 1 1657 248 117 39 chrX 108989777 108990064 -53609866 + L1ME2 LINE L1 5135 5398 -748 * 4850 171 76 27 chrX 108990051 108990797 -53609133 + L1MC1 LINE L1 4909 5617 -716 2126 109 0 0 chrX 108990797 108991073 -53608857 + AluSg SINE Alu 5 280 -30 4850 171 76 27 chrX 108991073 108991688 -53608242 + L1MC1 LINE L1 5617 6332 -1 3059 198 24 39 chrX 108991694 108992407 -53607523 + L1ME2 LINE L1 5453 6154 -10 243 0 0 0 chrX 108993426 108993453 -53606477 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 189 74 0 0 chrX 108993711 108993738 -53606192 + (TGG)n Simple_repeat Simple_repeat 2 28 0 336 24 0 0 chrX 108993766 108993807 -53606123 + (GGA)n Simple_repeat Simple_repeat 2 42 0 405 0 0 0 chrX 108993807 108993852 -53606078 + (TGG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chrX 108994548 108994569 -53605361 + AT_rich Low_complexity Low_complexity 1 21 0 568 185 57 10 chrX 108995033 108995169 -53604761 + L1ME1 LINE L1 6022 6161 -3 663 202 81 88 chrX 108995892 108996189 -53603741 - MER96B DNA MER1_type? -118 299 5 212 211 58 0 chrX 108996699 108996751 -53603179 - MIR SINE MIR -1 261 207 2264 105 7 0 chrX 108996751 108997047 -53602883 - AluSx SINE Alu -14 298 1 2231 210 97 45 chrX 108997274 108998264 -53601666 - L1MC5 LINE L1 -424 7537 6476 821 154 183 11 chrX 108998653 108998828 -53601102 + MER3 DNA MER1_type 5 209 0 300 292 27 2 chrX 108998889 108999012 -53600918 - L1MEc LINE L1 -902 1674 1540 2022 137 35 38 chrX 108999174 108999547 -53600383 + THE1C LTR MaLR 4 375 0 1939 144 7 0 chrX 108999741 109000033 -53599897 + AluJb SINE Alu 1 294 -18 1387 147 49 0 chrX 109000085 109000310 -53599620 + MER46A DNA MER2_type 1 236 0 383 292 152 23 chrX 109001142 109001313 -53598617 - MIR SINE MIR -64 198 6 244 280 75 0 chrX 109002058 109002151 -53597779 - L1MC4a LINE L1 -1635 6173 6074 1683 173 10 10 chrX 109002267 109002556 -53597374 - AluJb SINE Alu -23 289 1 188 286 20 0 chrX 109002670 109002719 -53597211 + L2 LINE L2 3205 3254 -18 549 308 148 14 chrX 109002761 109003125 -53596805 + L2 LINE L2 1823 2235 -1079 340 155 52 0 chrX 109003244 109003302 -53596628 + L2 LINE L2 3249 3309 -4 6129 95 16 29 chrX 109004382 109005438 -53594492 + L1PB1 LINE L1 5119 6150 -1 281 120 20 0 chrX 109005461 109005511 -53594419 - LOR1-int LTR ERV1 -7034 1086 1036 754 226 215 52 chrX 109005911 109006260 -53593670 + MLT1I LTR MaLR 4 409 0 539 274 178 14 chrX 109007528 109007747 -53592183 + MLT1I LTR MaLR 104 358 -51 453 239 176 5 chrX 109007799 109007987 -53591943 + MIR SINE MIR 43 262 0 831 222 130 14 chrX 109008466 109008682 -53591248 + MIR SINE MIR 5 245 -17 1275 165 30 15 chrX 109009385 109009651 -53590279 + L1MB8 LINE L1 5908 6177 -1 406 289 108 0 chrX 109009657 109009823 -53590107 + MIR SINE MIR 65 248 -14 2259 105 13 0 chrX 109012046 109012350 -53587580 + AluSx SINE Alu 1 308 -4 2127 68 0 8 chrX 109012350 109012635 -53587295 + AluY SINE Alu 18 300 0 1826 146 61 19 chrX 109012827 109013189 -53586741 - L1MA4 LINE L1 -6 6294 5918 744 185 185 48 chrX 109013220 109013409 -53586521 + MER20 DNA MER1_type 4 218 -1 229 265 162 26 chrX 109013859 109013976 -53585954 + MLT1I LTR MaLR 1 133 -276 265 280 56 28 chrX 109014058 109014165 -53585765 + MLT1I LTR MaLR 280 389 -20 1017 173 50 6 chrX 109014170 109014349 -53585581 + MER5A DNA MER1_type 2 188 -1 1741 120 12 89 chrX 109015008 109015142 -53584788 + AluJo SINE Alu 1 144 -168 2131 85 51 7 chrX 109015142 109015436 -53584494 + AluY SINE Alu 3 309 -2 1741 120 12 89 chrX 109015436 109015625 -53584305 + AluJo SINE Alu 144 299 -13 806 176 67 7 chrX 109016288 109016533 -53583397 - MER58B DNA MER1_type 0 341 19 1447 254 96 3 chrX 109018761 109019116 -53580814 + MLT1E LTR MaLR 206 593 0 2370 88 3 0 chrX 109019254 109019561 -53580369 + AluY SINE Alu 2 309 -2 479 258 96 18 chrX 109019886 109020053 -53579877 + MER5A DNA MER1_type 7 186 -3 187 281 146 0 chrX 109020345 109020427 -53579503 + L2 LINE L2 1732 1825 -1489 963 157 60 12 chrX 109021478 109021644 -53578286 + FAM SINE Alu 2 175 0 2270 110 0 0 chrX 109022841 109023142 -53576788 - AluSx SINE Alu -11 301 1 192 232 36 18 chrX 109023693 109023749 -53576181 + L2 LINE L2 2695 2751 -563 249 199 94 116 chrX 109023770 109023951 -53575979 + L1MC4 LINE L1 7865 8041 -1 371 333 108 57 chrX 109024091 109024388 -53575542 + L2 LINE L2 2912 3223 -49 1075 213 91 8 chrX 109025671 109025925 -53574005 - MER58B DNA MER1_type 0 341 67 618 200 38 17 chrX 109027303 109027460 -53572470 + L1ME1 LINE L1 6013 6163 -3 431 179 113 73 chrX 109027548 109027581 -53572349 - L1MA10 LINE L1 -3 6331 6003 2343 84 0 3 chrX 109027581 109027877 -53572053 + AluY SINE Alu 1 295 -16 757 251 113 22 chrX 109027879 109028154 -53571776 - L1ME2 LINE L1 -24 6140 5841 522 192 162 78 chrX 109028180 109028252 -53571678 + MER5A DNA MER1_type 9 74 -115 1916 139 3 10 chrX 109028252 109028554 -53571376 + AluJb SINE Alu 8 307 -5 522 192 162 78 chrX 109028554 109028648 -53571282 + MER5A DNA MER1_type 74 189 0 1754 155 13 30 chrX 109031799 109032103 -53567827 - AluJo SINE Alu -13 299 1 2069 74 93 0 chrX 109032249 109032518 -53567412 + AluY SINE Alu 1 294 -17 228 312 0 28 chrX 109032667 109032776 -53567154 + A-rich Low_complexity Low_complexity 1 106 0 2095 197 61 8 chrX 109032790 109033461 -53566469 + L1MB8 LINE L1 4817 5522 -662 875 204 50 18 chrX 109033504 109033725 -53566205 + L1MB8 LINE L1 5910 6137 -41 * 4066 166 54 6 chrX 109033723 109034505 -53565425 - L1MB8 LINE L1 -3 6175 5357 2682 216 66 12 chrX 109034506 109035185 -53564745 + L1ME1 LINE L1 5433 6148 -18 1843 270 88 31 chrX 109035257 109035355 -53564575 + HAL1 LINE L1 1176 1267 -1240 312 27 0 0 chrX 109035355 109035392 -53564538 + (ATG)n Simple_repeat Simple_repeat 3 39 0 1843 270 88 31 chrX 109035392 109036271 -53563659 + HAL1 LINE L1 1267 2209 -298 13388 154 35 26 chrX 109036300 109037687 -53562243 + L1MA7 LINE L1 2540 3913 -2378 2305 83 0 49 chrX 109037687 109038012 -53561918 + AluSg SINE Alu 1 309 -1 13388 154 35 26 chrX 109038012 109040341 -53559589 + L1MA7 LINE L1 3913 6288 -3 319 267 176 54 chrX 109040352 109040573 -53559357 + HAL1 LINE L1 2250 2497 -10 297 317 49 49 chrX 109040619 109040783 -53559147 - MIR3 SINE MIR -5 203 40 754 154 98 0 chrX 109041060 109041203 -53558727 - MER5A DNA MER1_type -32 157 1 379 250 71 14 chrX 109041231 109041371 -53558559 - MER103 DNA DNA 0 166 19 189 0 0 0 chrX 109041574 109041595 -53558335 + (A)n Simple_repeat Simple_repeat 1 21 0 382 232 80 45 chrX 109042145 109042257 -53557673 + MIR3 SINE MIR 85 200 -8 2216 110 3 0 chrX 109043035 109043335 -53556595 - AluSp SINE Alu -11 302 2 2463 73 0 6 chrX 109044233 109044546 -53555384 + AluY SINE Alu 1 311 0 2026 121 38 0 chrX 109045032 109045321 -53554609 + AluSx SINE Alu 1 300 -12 204 40 0 0 chrX 109045391 109045416 -53554514 + (A)n Simple_repeat Simple_repeat 1 25 0 1694 141 65 0 chrX 109045499 109045776 -53554154 + AluJb SINE Alu 3 297 -15 246 306 138 25 chrX 109046404 109046600 -53553330 - L2 LINE L2 -875 2439 2222 392 280 56 0 chrX 109047014 109047121 -53552809 + MIR SINE MIR 129 241 -21 2131 109 0 0 chrX 109047177 109047488 -53552442 + AluSx SINE Alu 1 311 0 946 91 8 0 chrX 109047824 109047956 -53551974 + AluSq/x SINE Alu 1 133 -179 21 0 0 0 chrX 109047956 109047977 -53551953 + AT_rich Low_complexity Low_complexity 1 21 0 244 303 53 0 chrX 109048466 109048542 -53551388 + MIR3 SINE MIR 124 203 -5 273 250 263 7 chrX 109048802 109048954 -53550976 + MIR3 SINE MIR 12 202 -6 33 56 0 0 chrX 109050467 109050521 -53549409 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chrX 109050814 109050835 -53549095 + AT_rich Low_complexity Low_complexity 1 21 0 2181 94 45 0 chrX 109051333 109051620 -53548310 + AluSp SINE Alu 1 300 -13 25 0 0 0 chrX 109051712 109051737 -53548193 + AT_rich Low_complexity Low_complexity 1 25 0 577 194 29 0 chrX 109052083 109052186 -53547744 + L2 LINE L2 3208 3313 0 34 55 0 0 chrX 109052260 109052315 -53547615 + AT_rich Low_complexity Low_complexity 1 55 0 1329 247 107 30 chrX 109052542 109053060 -53546870 + L2 LINE L2 2724 3294 -19 209 319 11 0 chrX 109053203 109053297 -53546633 + (CA)n Simple_repeat Simple_repeat 2 96 0 1940 119 18 80 chrX 109053886 109053953 -53545977 - MER47A DNA MER2_type -1960 363 293 1554 180 26 36 chrX 109053953 109054259 -53545671 + AluJo SINE Alu 1 303 -9 1940 119 18 80 chrX 109054259 109054578 -53545352 - MER47A DNA MER2_type -2030 293 1 2155 107 3 31 chrX 109054943 109055260 -53544670 + AluSx SINE Alu 5 312 0 683 250 139 6 chrX 109055283 109055463 -53544467 + MIR SINE MIR 20 223 -39 771 63 175 77 chrX 109056102 109056245 -53543685 + L1PA11 LINE L1 6009 6165 -9 22 35 0 0 chrX 109057463 109057492 -53542438 + GC_rich Low_complexity Low_complexity 1 29 0 217 162 0 0 chrX 109057531 109057568 -53542362 - MIR SINE MIR -29 233 197 925 129 231 59 chrX 109057826 109057939 -53541991 + AluJb SINE Alu 3 95 -207 1846 150 3 10 chrX 109057939 109058239 -53541691 + AluSx SINE Alu 1 298 -14 925 129 231 59 chrX 109058239 109058381 -53541549 + AluJb SINE Alu 95 302 0 517 123 0 104 chrX 109058401 109058460 -53541470 - FLAM_A SINE Alu -199 112 67 4981 69 8 22 chrX 109058460 109058816 -53541114 + PABL_A LTR ERV1 1 344 -316 2460 74 0 0 chrX 109058816 109059115 -53540815 - AluY SINE Alu -12 299 1 4981 69 8 22 chrX 109059115 109059428 -53540502 + PABL_A LTR ERV1 344 660 0 517 123 0 104 chrX 109059428 109059474 -53540456 - FLAM_A SINE Alu -244 67 18 2288 102 0 0 chrX 109059507 109059801 -53540129 + AluSg SINE Alu 1 294 -16 540 243 271 5 chrX 109060401 109060611 -53539319 + MER101 LTR ERV1 233 512 -58 2145 125 7 0 chrX 109061779 109062082 -53537848 + AluSx SINE Alu 1 305 -7 1819 160 10 10 chrX 109062907 109063200 -53536730 - AluJo SINE Alu -17 295 3 453 297 79 67 chrX 109063355 109063864 -53536066 + MER31-int LTR ERV1 2546 3984 -3107 270 274 97 8 chrX 109064525 109064649 -53535281 + MER31-int LTR ERV1 3374 3508 -3293 585 360 24 18 chrX 109065640 109066020 -53533910 + MER31-int LTR ERV1 2177 2558 -2089 391 209 0 118 chrX 109066252 109066362 -53533568 + MER31-int LTR ERV1 3786 3882 -4238 338 267 0 20 chrX 109066732 109066833 -53533097 + MER101 LTR ERV1 232 330 -144 2402 88 3 0 chrX 109066898 109067205 -53532725 + AluSp SINE Alu 1 308 -5 341 270 135 40 chrX 109067675 109067801 -53532129 + MIR3 SINE MIR 68 205 -3 189 268 0 0 chrX 109068015 109068056 -53531874 - MIR SINE MIR -149 113 73 32 20 0 20 chrX 109068618 109068629 -53531301 + AT_rich Low_complexity Low_complexity 1 11 -38 795 132 0 8 chrX 109068629 109068750 -53531180 + 5S rRNA rRNA 1 120 -1 32 20 0 20 chrX 109068750 109068788 -53531142 + AT_rich Low_complexity Low_complexity 11 49 0 2355 86 0 0 chrX 109069271 109069563 -53530367 - AluSg SINE Alu -18 292 1 744 214 21 0 chrX 109069565 109069710 -53530220 - Charlie1b DNA MER1_type -325 198 51 324 271 75 62 chrX 109069887 109070193 -53529737 + MER31-int LTR ERV1 2471 2780 -2156 840 57 43 0 chrX 109070233 109070373 -53529557 + (TA)n Simple_repeat Simple_repeat 1 146 0 2175 93 3 7 chrX 109070382 109070672 -53529258 - AluSg SINE Alu -21 289 1 269 217 6 155 chrX 109070790 109070864 -53529066 + MER31-int LTR ERV1 2928 2967 -1969 2430 68 10 0 chrX 109070864 109071158 -53528772 + AluSp SINE Alu 3 299 -14 269 217 6 155 chrX 109071158 109071244 -53528686 + MER31-int LTR ERV1 2967 3064 -1872 21 36 0 0 chrX 109071356 109071384 -53528546 + AT_rich Low_complexity Low_complexity 1 28 0 380 378 61 44 chrX 109071640 109071936 -53527994 + L2 LINE L2 2967 3267 -5 215 310 56 14 chrX 109072167 109072238 -53527692 - MIR SINE MIR -114 94 21 3025 62 20 15 chrX 109072563 109072965 -53526965 - MLT2A1 LTR ERVL -40 404 1 265 303 0 0 chrX 109073493 109073569 -53526361 - MIR SINE MIR -6 256 181 1029 172 64 30 chrX 109073698 109073901 -53526029 - AluJb SINE Alu -21 291 82 487 170 10 0 chrX 109074393 109074493 -53525437 + L1PA16 LINE L1 6066 6166 0 671 296 162 13 chrX 109074619 109075014 -53524916 - L2 LINE L2 -5 3308 2855 871 184 0 0 chrX 109075234 109075386 -53524544 - FRAM SINE Alu -13 153 2 4095 235 121 86 chrX 109075424 109076285 -53523645 - HAL1 LINE L1 -2 2505 1675 1938 192 98 19 chrX 109076285 109076753 -53523177 - MLT1D LTR MaLR 0 505 1 4095 235 121 86 chrX 109076753 109076954 -53522976 - HAL1 LINE L1 -832 1675 1482 2035 146 144 5 chrX 109076954 109077330 -53522600 - MSTA LTR MaLR 0 428 1 4095 235 121 86 chrX 109077330 109078017 -53521913 - HAL1 LINE L1 -1025 1482 820 1521 172 18 56 chrX 109078017 109078156 -53521774 + AluJo SINE Alu 1 125 -187 2060 131 0 3 chrX 109078156 109078447 -53521483 + AluSx SINE Alu 1 290 -22 1521 172 18 56 chrX 109078447 109078592 -53521338 + AluJo SINE Alu 125 274 -38 4095 235 121 86 chrX 109078592 109078607 -53521323 - HAL1 LINE L1 -1687 820 807 1060 69 40 6 chrX 109078607 109078781 -53521149 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4095 235 121 86 chrX 109078781 109079020 -53520910 - HAL1 LINE L1 -1700 807 578 2168 102 6 19 chrX 109079020 109079047 -53520883 - AluSq SINE Alu -4 309 283 192 40 0 0 chrX 109079047 109079072 -53520858 + (TATG)n Simple_repeat Simple_repeat 2 26 0 2168 102 6 19 chrX 109079072 109079357 -53520573 - AluSq SINE Alu -30 283 1 4095 235 121 86 chrX 109079357 109079631 -53520299 - HAL1 LINE L1 -1929 578 315 2068 107 0 14 chrX 109079631 109079911 -53520019 - AluSx SINE Alu -36 276 1 797 201 78 7 chrX 109079920 109080074 -53519856 - FAM SINE Alu -10 165 1 4095 235 121 86 chrX 109080074 109080202 -53519728 - HAL1 LINE L1 -2199 308 2 233 202 60 119 chrX 109080812 109080896 -53519034 - MIR SINE MIR -1 261 183 1982 99 20 43 chrX 109081620 109081922 -53518008 + AluSx SINE Alu 1 295 -17 317 356 13 40 chrX 109081936 109082085 -53517845 - L2 LINE L2 -6 3266 3122 640 204 54 14 chrX 109082829 109082976 -53516954 - MIR SINE MIR -15 247 95 2808 84 25 15 chrX 109082976 109083381 -53516549 + MLT2A1 LTR ERVL 1 409 -35 237 132 0 0 chrX 109083381 109083419 -53516511 + (TA)n Simple_repeat Simple_repeat 2 39 0 249 119 0 0 chrX 109083601 109083643 -53516287 + (TA)n Simple_repeat Simple_repeat 2 43 0 222 150 0 0 chrX 109083666 109083706 -53516224 + (TA)n Simple_repeat Simple_repeat 2 41 0 317 191 21 85 chrX 109083708 109083802 -53516128 - L1MC4 LINE L1 -1341 6701 6614 277 200 0 0 chrX 109083828 109083883 -53516047 + MLT2A1 LTR ERVL 390 444 0 342 323 0 10 chrX 109083884 109083983 -53515947 - MIR SINE MIR -164 98 1 318 291 58 0 chrX 109083987 109084090 -53515840 - L2 LINE L2 -987 2327 2219 22 56 0 0 chrX 109084209 109084245 -53515685 + AT_rich Low_complexity Low_complexity 1 36 0 216 97 0 0 chrX 109084546 109084577 -53515353 + (TATG)n Simple_repeat Simple_repeat 2 32 0 191 255 106 0 chrX 109084862 109084909 -53515021 - MIR SINE MIR -192 70 19 229 221 13 13 chrX 109086613 109086690 -53513240 - L1MB8 LINE L1 -11 6167 6091 2173 97 33 3 chrX 109086974 109087273 -53512657 + AluSg SINE Alu 1 308 -2 306 221 139 76 chrX 109087862 109088034 -53511896 + L1M4 LINE L1 49 231 -6311 1864 117 29 60 chrX 109088160 109088510 -53511420 + Tigger2a DNA MER2_type 1 339 -95 322 331 31 8 chrX 109088510 109088640 -53511290 + L1M3e LINE L1 412 544 -6486 1741 226 32 122 chrX 109088650 109089692 -53510238 + L1M3e LINE L1 753 1700 -5789 * 2796 224 27 75 chrX 109089689 109089964 -53509966 + L1M3e LINE L1 2391 2678 -4887 968 169 106 5 chrX 109089964 109090153 -53509777 + MER6B DNA MER2_type 1 208 -2 2796 224 27 75 chrX 109090153 109090213 -53509717 + L1M3e LINE L1 2678 2739 -4826 1890 146 0 23 chrX 109090213 109090522 -53509408 + AluSx SINE Alu 5 306 -6 2796 224 27 75 chrX 109090522 109090705 -53509225 + L1M3e LINE L1 2739 2929 -4636 6712 151 43 1 chrX 109090705 109091255 -53508675 + Tigger3b DNA MER2_type 1 526 -2502 186 43 0 0 chrX 109091255 109091278 -53508652 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6712 151 43 1 chrX 109091278 109091907 -53508023 + Tigger3b DNA MER2_type 526 1230 -1 2796 224 27 75 chrX 109091907 109092265 -53507665 + L1M3e LINE L1 2929 3303 -4262 1825 148 40 10 chrX 109092265 109092568 -53507362 + AluSx SINE Alu 1 312 0 2796 224 27 75 chrX 109092568 109092791 -53507139 + L1M3e LINE L1 3303 3535 -4030 5339 73 9 1 chrX 109092791 109093476 -53506454 + LTR8 LTR ERV1 1 690 -1 2796 224 27 75 chrX 109093476 109094273 -53505657 + L1M3e LINE L1 3535 4223 -3342 254 220 0 0 chrX 109094273 109094323 -53505607 + PABL_B LTR ERV1 1 50 -617 818 235 81 74 chrX 109094343 109095008 -53504922 + PABL_B LTR ERV1 3 667 0 5759 174 24 37 chrX 109095009 109096320 -53503610 + L1M3e LINE L1 4221 5514 -2051 1890 194 19 6 chrX 109096321 109096681 -53503249 + MLT1A1 LTR MaLR 1 365 0 648 206 0 0 chrX 109096681 109096807 -53503123 + MLT1A1-int LTR MaLR 1 126 -1609 1003 162 0 0 chrX 109096807 109096961 -53502969 + FRAM SINE Alu 5 158 -18 2672 205 2 2 chrX 109096963 109097476 -53502454 + MLT1A1-int LTR MaLR 120 632 -1103 7930 11 0 0 chrX 109097483 109098996 -53500934 - L1PA2 LINE L1 0 6155 4643 11257 28 0 0 chrX 109098996 109100361 -53499569 + L1P LINE L1 2557 3921 -2225 748 250 29 6 chrX 109100358 109100530 -53499400 + MLT1A1-int LTR MaLR 627 802 -933 * 808 219 4 107 chrX 109100611 109100881 -53499049 + MLT1A1-int LTR MaLR 858 1099 -636 352 258 23 20 chrX 109100880 109100993 -53498937 - MLT-int LTR MaLR -548 1187 1023 * 1680 147 168 6 chrX 109101148 109101475 -53498455 - MSTA LTR MaLR 0 428 49 2227 88 0 7 chrX 109101514 109101810 -53498120 + AluY SINE Alu 1 294 -17 28 48 0 0 chrX 109102383 109102425 -53497505 + AT_rich Low_complexity Low_complexity 1 42 0 235 49 49 0 chrX 109102494 109102535 -53497395 + (TA)n Simple_repeat Simple_repeat 1 43 0 4469 194 91 32 chrX 109102685 109102904 -53497026 - L1MD2 LINE L1 -12 6347 6142 186 43 0 0 chrX 109102904 109102927 -53497003 + (TG)n Simple_repeat Simple_repeat 2 24 0 4469 194 91 32 chrX 109102927 109104127 -53495803 - L1MD2 LINE L1 -217 6142 4827 474 139 13 0 chrX 109104127 109104206 -53495724 + MADE1 DNA Mariner 1 80 0 4469 194 91 32 chrX 109104206 109104252 -53495678 - L1MD2 LINE L1 -1532 4827 4785 322 280 68 71 chrX 109104636 109105061 -53494869 - MER31-int LTR ERV1 -2848 2088 1665 21 36 0 0 chrX 109105205 109105233 -53494697 + AT_rich Low_complexity Low_complexity 1 28 0 2271 113 0 0 chrX 109105289 109105590 -53494340 - AluSx SINE Alu -11 301 1 277 324 8 60 chrX 109105738 109105988 -53493942 - MER31-int LTR ERV1 -3650 1286 1050 720 185 99 105 chrX 109106434 109106758 -53493172 - LTR37B LTR ERV1 0 468 147 696 219 35 32 chrX 109106797 109106983 -53492947 + MER58B DNA MER1_type 1 341 0 287 302 95 16 chrX 109107168 109107294 -53492636 + L2 LINE L2 3177 3312 -1 2333 149 37 28 chrX 109107543 109107971 -53491959 - MSTB1 LTR MaLR 0 432 1 2703 137 27 16 chrX 109108185 109108632 -53491298 - Tigger2 DNA MER2_type 0 2718 2267 387 203 0 0 chrX 109108616 109108685 -53491245 - Tigger2 DNA MER2_type -2649 69 1 * 22 0 0 0 chrX 109109849 109109871 -53490059 + AT_rich Low_complexity Low_complexity 1 22 0 1529 152 97 10 chrX 109110080 109110370 -53489560 - MLT1A1 LTR MaLR -50 315 1 6262 62 5 95 chrX 109110785 109111626 -53488304 - L1PA14 LINE L1 -9 6152 5359 2125 112 0 0 chrX 109111626 109111912 -53488018 - AluSx SINE Alu -23 289 4 6262 62 5 95 chrX 109111912 109112215 -53487715 - L1PA14 LINE L1 -802 5359 5030 286 238 111 0 chrX 109112542 109112605 -53487325 - L3 LINE CR1 -7 1570 1501 398 250 149 40 chrX 109112627 109112775 -53487155 + MIR SINE MIR 1 164 -98 189 233 0 23 chrX 109112778 109112821 -53487109 - MIR SINE MIR -8 254 213 343 203 189 20 chrX 109113077 109113225 -53486705 - Charlie7 DNA MER1_type 0 2612 2440 448 149 47 0 chrX 109113233 109113339 -53486591 + L1M4 LINE L1 5246 5356 -808 * 2252 155 33 35 chrX 109113320 109113803 -53486127 + L1M2 LINE L1 4850 5331 -815 1639 143 15 27 chrX 109114423 109114752 -53485178 + L1M2 LINE L1 5299 5623 -668 8074 110 7 37 chrX 109314752 109316173 -53283757 - L1P3 LINE L1 -2927 3534 2156 1865 30 0 0 chrX 109316171 109316405 -53283525 + L1PA4 LINE L1 5046 5279 -867 * 5348 30 0 0 chrX 109316405 109317029 -53282901 + L1PA3 LINE L1 5531 6155 0 7385 24 0 0 chrX 109317035 109317898 -53282032 + L1PA4 LINE L1 5293 6155 0 7485 173 29 13 chrX 109317899 109318780 -53281150 - L1P3 LINE L1 -4288 2173 1307 189 74 0 0 chrX 109318780 109318807 -53281123 + (TTG)n Simple_repeat Simple_repeat 1 27 0 7485 173 29 13 chrX 109318807 109320010 -53279920 - L1P3 LINE L1 -5154 1307 3 8243 154 16 22 chrX 109320011 109320896 -53279034 + L1MA3 LINE L1 3542 4430 -1875 2393 85 0 22 chrX 109320896 109321213 -53278717 + AluY SINE Alu 1 310 -1 8243 154 16 22 chrX 109321213 109321875 -53278055 + L1MA3 LINE L1 4430 5094 -1211 1822 171 0 25 chrX 109321875 109322191 -53277739 + AluJb SINE Alu 1 308 -4 8243 154 16 22 chrX 109322191 109323425 -53276505 + L1MA3 LINE L1 5094 6305 0 1255 201 16 38 chrX 109323433 109323855 -53276075 + L1M3 LINE L1 5188 5599 -581 405 258 109 52 chrX 109323860 109324190 -53275740 - L1MDa LINE L1 -1221 5319 4971 307 297 0 9 chrX 109324211 109324322 -53275608 - L1MDa LINE L1 -1626 4914 4805 1776 321 35 20 chrX 109324344 109325469 -53274461 - HERV16 LTR ERVL -1680 3562 2452 831 278 56 57 chrX 109325503 109326190 -53273740 - L1MDa LINE L1 -2295 4245 3558 2294 67 3 3 chrX 109326190 109326475 -53273455 + AluY SINE Alu 1 285 -26 831 278 56 57 chrX 109326475 109326539 -53273391 - L1MDa LINE L1 -2982 3558 3495 2188 166 49 119 chrX 109326542 109326890 -53273040 - MER63C DNA MER1_type -130 930 559 2343 89 0 3 chrX 109326890 109327192 -53272738 + AluSx SINE Alu 2 302 -10 2188 166 49 119 chrX 109327192 109327367 -53272563 - MER63C DNA MER1_type -501 559 470 2028 132 0 0 chrX 109327367 109327655 -53272275 - AluSx SINE Alu -24 288 1 2188 166 49 119 chrX 109327655 109327859 -53272071 - MER63C DNA MER1_type -590 470 253 353 312 9 0 chrX 109327890 109327999 -53271931 - L1MDa LINE L1 -3046 3494 3385 354 216 14 0 chrX 109328067 109328141 -53271789 + MER63 DNA MER1_type 43 743 -93 269 293 12 0 chrX 109328144 109328226 -53271704 + MER63 DNA MER1_type 980 1062 0 319 284 65 26 chrX 109328227 109328537 -53271393 - L1MDa LINE L1 -3162 3378 3057 1240 162 28 24 chrX 109328548 109328801 -53271129 - L1MC1 LINE L1 0 6333 6080 563 122 0 37 chrX 109328801 109328908 -53271022 + MER4A LTR ERV1 3 105 -559 383 235 20 10 chrX 109329238 109329336 -53270594 - PABL_B-int LTR ERV1 -439 6683 6585 279 21 62 0 chrX 109329336 109329384 -53270546 + (TA)n Simple_repeat Simple_repeat 1 51 0 383 118 0 29 chrX 109329578 109329646 -53270284 + MER4A-int LTR ERV1 6532 6597 -1 1664 152 112 37 chrX 109329654 109330203 -53269727 + MER4A LTR ERV1 1 447 -18 1221 121 15 0 chrX 109330221 109330419 -53269511 - L1MC1 LINE L1 -247 6086 5886 251 341 62 11 chrX 109330453 109330726 -53269204 - L1MDa LINE L1 -3519 3021 2735 322 281 159 28 chrX 109330742 109330976 -53268954 - L1MDa LINE L1 -3865 2675 2414 299 96 19 0 chrX 109331343 109331395 -53268535 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chrX 109331644 109331666 -53268264 + AT_rich Low_complexity Low_complexity 1 22 0 264 235 0 59 chrX 109332234 109332302 -53267628 + MIR3 SINE MIR 133 196 -12 220 237 0 68 chrX 109332251 109332310 -53267620 + L3b LINE CR1 1529 1583 0 * 476 289 75 21 chrX 109332514 109332701 -53267229 - MIR SINE MIR -60 202 6 431 247 82 0 chrX 109332715 109332812 -53267118 - L2 LINE L2 0 3313 3209 3434 163 20 33 chrX 109333070 109333769 -53266161 - L1MB7 LINE L1 -1 6183 5494 636 251 35 97 chrX 109333813 109334072 -53265858 - MIR SINE MIR 0 262 20 620 226 71 18 chrX 109334617 109334785 -53265145 + MIR SINE MIR 8 184 -78 846 191 22 38 chrX 109334785 109335020 -53264910 - MER4D LTR ERV1 0 903 445 614 214 7 14 chrX 109335099 109335244 -53264686 - MER4D LTR ERV1 -209 694 551 1582 166 14 0 chrX 109335279 109335557 -53264373 - MER49 LTR ERV1 -641 282 1 325 241 0 13 chrX 109335557 109335636 -53264294 + MIR SINE MIR 181 258 -4 22 0 0 0 chrX 109336401 109336423 -53263507 + AT_rich Low_complexity Low_complexity 1 22 0 194 339 15 0 chrX 109336526 109336591 -53263339 - L3 LINE CR1 -2 1575 1510 31 26 0 0 chrX 109336686 109336724 -53263206 + AT_rich Low_complexity Low_complexity 1 38 0 312 120 0 0 chrX 109337006 109337056 -53262874 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 548 227 298 25 chrX 109337058 109337296 -53262634 - L2 LINE L2 -12 3301 2999 4278 112 44 32 chrX 109337539 109338635 -53261295 - MER11A LTR ERVK -4 1067 1 470 216 0 10 chrX 109339567 109339669 -53260261 + MIR SINE MIR 162 262 0 784 144 123 0 chrX 109339699 109339862 -53260068 + MER5A DNA MER1_type 4 189 0 1738 197 28 14 chrX 109341168 109341599 -53258331 - Charlie4a DNA MER1_type 0 508 72 21 0 0 0 chrX 109341629 109341650 -53258280 + AT_rich Low_complexity Low_complexity 1 21 0 418 296 70 28 chrX 109341852 109341994 -53257936 + L2 LINE L2 3124 3271 -1 201 330 45 23 chrX 109342243 109342331 -53257599 - L2 LINE L2 -4 3268 3179 182 302 57 0 chrX 109342585 109342638 -53257292 - L3b LINE CR1 -94 1489 1434 456 221 71 26 chrX 109343338 109343451 -53256479 - L2 LINE L2 0 3272 3155 310 248 8 51 chrX 109343439 109343556 -53256374 + MIR SINE MIR 89 200 -62 * 811 195 166 10 chrX 109344484 109344689 -53255241 + MIR SINE MIR 2 238 -24 1278 285 34 6 chrX 109344742 109345096 -53254834 + MLT1I LTR MaLR 46 409 0 30 0 0 0 chrX 109345337 109345367 -53254563 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chrX 109345716 109345744 -53254186 + AT_rich Low_complexity Low_complexity 1 28 0 497 196 0 0 chrX 109345844 109345956 -53253974 + MER113 DNA MER1_type? 1 112 -409 1041 93 49 113 chrX 109345972 109346219 -53253711 + L1MA8 LINE L1 6057 6287 -4 22 0 0 0 chrX 109346307 109346329 -53253601 + AT_rich Low_complexity Low_complexity 1 22 0 289 325 25 6 chrX 109347685 109347845 -53252085 + L1ME LINE L1 5666 5828 -342 1178 208 14 0 chrX 109348828 109349049 -53250881 + MER58A DNA MER1_type 1 224 0 443 276 45 8 chrX 109349296 109349430 -53250500 + L2 LINE L2 2333 2471 -843 835 204 30 46 chrX 109349438 109349722 -53250208 - L1MA7 LINE L1 -2 6289 6009 1742 138 3 63 chrX 109349722 109349955 -53249975 + L1MA7 LINE L1 5717 5920 -371 2362 96 0 10 chrX 109349955 109350267 -53249663 + AluSg SINE Alu 2 310 0 1742 138 3 63 chrX 109350267 109350411 -53249519 + L1MA7 LINE L1 5920 6071 -220 1600 263 80 41 chrX 109350411 109351232 -53248698 + L2 LINE L2 2467 3309 -4 582 347 137 31 chrX 109352722 109353079 -53246851 - L2 LINE L2 -5 3267 2873 1697 206 99 42 chrX 109353149 109353683 -53246247 + MLT1F1 LTR MaLR 1 567 0 3346 191 17 22 chrX 109354465 109355735 -53244195 + L1MB3 LINE L1 4564 5831 -352 3630 118 20 6 chrX 109355960 109356510 -53243420 - L1PA15 LINE L1 -3 6162 5605 2160 134 14 6 chrX 109356510 109356869 -53243061 + L1MB3 LINE L1 5819 6180 -3 366 271 37 70 chrX 109357188 109357402 -53242528 - MIR SINE MIR -10 252 46 957 269 88 45 chrX 109357404 109357824 -53242106 + L2 LINE L2 2295 2732 -582 1724 150 34 0 chrX 109357916 109358209 -53241721 - Tigger3(Golem) DNA MER2_type 0 3029 2727 204 271 43 29 chrX 109358243 109358313 -53241617 - MIR SINE MIR -69 139 69 485 324 21 25 chrX 109358323 109358607 -53241323 + L1ME3A LINE L1 5602 5884 -286 10670 144 28 44 chrX 109358631 109361604 -53238326 + L1PA8 LINE L1 1 3021 -3466 1641 176 36 36 chrX 109361604 109362582 -53237348 + SVA Other Other 432 868 -783 10670 144 28 44 chrX 109362582 109366047 -53233883 + L1PA8 LINE L1 3021 6479 -8 400 304 5 55 chrX 109366288 109366498 -53233432 + MIR SINE MIR 28 218 -44 311 335 57 33 chrX 109366695 109366940 -53232990 + MLT1K LTR MaLR 179 429 -159 275 135 0 58 chrX 109367982 109368034 -53231896 + L2 LINE L2 3015 3063 -250 948 258 57 4 chrX 109368199 109368443 -53231487 - MIR SINE MIR -5 257 1 360 291 35 0 chrX 109368443 109368520 -53231410 + L2 LINE L2 3188 3267 -5 20258 41 1 0 chrX 109368690 109371975 -53227955 - L1PA4 LINE L1 -1 6154 2865 12838 48 8 0 chrX 109371975 109373675 -53226255 - L1PA4 LINE L1 -3539 2607 894 1176 104 6 11 chrX 109373645 109373828 -53226102 - L1PA4 LINE L1 -5964 182 1 * 1223 195 105 54 chrX 109373864 109374234 -53225696 - MLT1B LTR MaLR -1 389 1 890 275 57 33 chrX 109374237 109374662 -53225268 + L1MC4 LINE L1 7546 7980 -62 359 243 144 46 chrX 109374748 109374921 -53225009 + L2 LINE L2 3077 3266 -47 193 256 38 119 chrX 109375382 109375512 -53224418 - L2 LINE L2 -678 2636 2520 1317 199 107 30 chrX 109375512 109375878 -53224052 - MSTD LTR MaLR -2 394 1 193 256 38 119 chrX 109375878 109375907 -53224023 - L2 LINE L2 -794 2520 2490 247 317 13 55 chrX 109376612 109376835 -53223095 + MER20B DNA MER1_type 4 219 0 277 250 221 10 chrX 109376975 109377079 -53222851 - MIR SINE MIR -109 153 28 1888 219 47 7 chrX 109377273 109377725 -53222205 - L1MD2 LINE L1 -22 6337 5868 3809 94 25 50 chrX 109377727 109378367 -53221563 + L1PA12 LINE L1 5500 6123 -45 351 0 0 0 chrX 109378373 109378412 -53221518 + (A)n Simple_repeat Simple_repeat 1 39 0 2250 113 0 0 chrX 109378412 109378693 -53221237 + AluSg SINE Alu 1 284 -26 429 20 0 0 chrX 109378693 109378743 -53221187 + (TA)n Simple_repeat Simple_repeat 2 51 0 2250 113 0 0 chrX 109378743 109378761 -53221169 + AluSg SINE Alu 283 300 -10 2294 193 21 6 chrX 109378765 109379278 -53220652 - L1MD2 LINE L1 -402 5840 5320 2899 73 42 5 chrX 109379346 109379770 -53220160 + L1P3 LINE L1 5304 5743 -411 4111 226 25 59 chrX 109379770 109380067 -53219863 - L1MD2 LINE L1 -825 5321 5015 6352 73 25 2 chrX 109380067 109381172 -53218758 + L1PA13 LINE L1 5033 6158 -5 4111 226 25 59 chrX 109381172 109381253 -53218677 - L1MD2 LINE L1 -1131 5015 4933 1019 207 22 0 chrX 109381253 109381475 -53218455 + L1PA16 LINE L1 5938 6164 -2 4111 226 25 59 chrX 109381475 109382594 -53217336 - L1MD2 LINE L1 -1213 4933 3875 1110 61 8 0 chrX 109382595 109382726 -53217204 - AluSp SINE Alu -181 132 1 729 179 0 37 chrX 109383030 109383164 -53216766 - FLAM_A SINE Alu -4 129 1 25 31 0 0 chrX 109383222 109383254 -53216676 + AT_rich Low_complexity Low_complexity 1 32 0 426 279 62 19 chrX 109383264 109383425 -53216505 - MIR SINE MIR -48 214 47 247 282 0 0 chrX 109384192 109384263 -53215667 + CT-rich Low_complexity Low_complexity 2 72 0 1934 58 4 4 chrX 109384503 109384743 -53215187 + AluY SINE Alu 56 295 -16 587 121 0 61 chrX 109385547 109385646 -53214284 - AluJo SINE Alu -14 298 206 1405 178 0 9 chrX 109385670 109385900 -53214030 - AluJo SINE Alu -84 228 1 979 218 79 30 chrX 109386732 109387035 -53212895 + MLT1J1 LTR MaLR 1 318 -128 1130 128 10 0 chrX 109387137 109387332 -53212598 - L1MA5A LINE L1 -4 6293 6097 297 321 102 42 chrX 109387412 109387627 -53212303 - L2 LINE L2 -177 3095 2868 591 260 73 17 chrX 109388239 109388416 -53211514 - MIR3 SINE MIR -6 202 16 279 281 22 86 chrX 109389281 109389420 -53210510 - MIR SINE MIR -60 148 19 611 282 17 6 chrX 109389624 109389805 -53210125 - MIR SINE MIR -3 259 77 227 238 38 50 chrX 109390641 109390721 -53209209 + L3b LINE CR1 1310 1388 -195 4054 152 21 21 chrX 109390721 109392107 -53207823 - L1MA4A LINE L1 -374 5929 4537 198 0 0 0 chrX 109392159 109392181 -53207749 + (T)n Simple_repeat Simple_repeat 1 22 0 1850 79 0 21 chrX 109392182 109392423 -53207507 - AluY SINE Alu -75 236 1 5134 191 43 1 chrX 109392548 109393669 -53206261 - L1MA4A LINE L1 -1602 4544 3377 2185 113 14 74 chrX 109394171 109394603 -53205327 + Ricksha DNA DNA 2839 3244 -7 435 191 11 0 chrX 109394937 109395026 -53204904 - MLT1H LTR MaLR 0 549 460 924 202 17 6 chrX 109395031 109395204 -53204726 - MER96 DNA MER1_type 0 175 1 2535 149 26 14 chrX 109395400 109395829 -53204101 - Tigger2a DNA MER2_type 0 434 1 2187 103 0 13 chrX 109398239 109398539 -53201391 + AluSg SINE Alu 1 296 -14 302 284 92 35 chrX 109402010 109402151 -53197779 + MIR3 SINE MIR 2 150 -58 241 333 81 20 chrX 109402760 109402859 -53197071 - L2 LINE L2 0 3272 3168 756 268 47 9 chrX 109404506 109404719 -53195211 - MER58A DNA MER1_type -3 221 1 1930 118 44 80 chrX 109406519 109406908 -53193022 + THE1C LTR MaLR 1 375 0 432 297 51 7 chrX 109406966 109407104 -53192826 + MIR SINE MIR 45 188 -74 234 204 0 0 chrX 109407149 109407193 -53192737 - L2 LINE L2 -8 3305 3262 941 257 80 8 chrX 109407575 109407812 -53192118 - MIR SINE MIR -3 259 6 259 54 27 0 chrX 109407827 109407864 -53192066 + (TC)n Simple_repeat Simple_repeat 1 38 0 443 136 0 11 chrX 109407865 109407953 -53191977 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 694 260 5 47 chrX 109408179 109408371 -53191559 - MIR SINE MIR -71 191 8 1315 290 52 18 chrX 109408654 109409158 -53190772 - LTR33 LTR ERVL 0 521 1 391 239 215 39 chrX 109409289 109409494 -53190436 - MLT1J2 LTR MaLR -7 443 203 743 178 82 163 chrX 109411245 109411588 -53188342 + MLT2B1 LTR ERVL 44 352 -62 333 0 0 0 chrX 109411588 109411625 -53188305 + (TG)n Simple_repeat Simple_repeat 2 38 0 743 178 82 163 chrX 109411625 109411681 -53188249 + MLT2B1 LTR ERVL 352 411 -3 562 196 51 19 chrX 109411722 109411880 -53188050 - L1M4 LINE L1 -1034 5112 4950 2849 164 95 14 chrX 109411929 109411975 -53187955 - L1MC1 LINE L1 -6 6310 6269 1963 107 0 0 chrX 109411975 109412219 -53187711 + AluSx SINE Alu 40 306 -6 414 0 39 0 chrX 109412219 109412271 -53187659 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 2849 164 95 14 chrX 109412279 109412853 -53187077 - L1MC1 LINE L1 -47 6269 5640 6666 202 18 15 chrX 109412857 109414856 -53185074 - L1MC1 LINE L1 -739 5588 3582 458 194 8 39 chrX 109414853 109414982 -53184948 - L1M4 LINE L1 -1059 5087 4963 * 1924 150 7 7 chrX 109414985 109415291 -53184639 + AluSg SINE Alu 1 306 -4 451 209 20 20 chrX 109415291 109415444 -53184486 + GA-rich Low_complexity Low_complexity 1 153 0 4093 256 86 15 chrX 109415508 109417153 -53182777 - L1M4 LINE L1 -1299 4847 3086 554 371 11 14 chrX 109417509 109417857 -53182073 - L1MEc LINE L1 -6013 383 37 476 305 63 75 chrX 109417870 109418313 -53181617 - L1MC1 LINE L1 -5192 927 490 2408 93 0 0 chrX 109418724 109419026 -53180904 - AluSg SINE Alu -8 302 1 518 284 82 5 chrX 109419033 109419227 -53180703 - MIR SINE MIR 0 262 54 530 198 89 0 chrX 109419289 109419390 -53180540 - MER81 DNA DNA 0 114 5 23 0 0 0 chrX 109420717 109420740 -53179190 + AT_rich Low_complexity Low_complexity 1 23 0 646 193 0 8 chrX 109421215 109421334 -53178596 - L2 LINE L2 -7 3306 3189 355 413 30 6 chrX 109421394 109421723 -53178207 + L2 LINE L2 2557 2893 -421 1596 186 60 17 chrX 109422127 109422476 -53177454 + MLT1A1 LTR MaLR 2 365 0 757 240 36 36 chrX 109422995 109423191 -53176739 - MIR SINE MIR 0 262 67 962 277 46 21 chrX 109423618 109423903 -53176027 - L2 LINE L2 -1 3312 3021 2259 91 0 13 chrX 109424474 109424797 -53175133 - AluSg SINE Alu 0 319 1 203 319 167 34 chrX 109425551 109425814 -53174116 + L2 LINE L2 2217 2514 -800 516 268 0 8 chrX 109426316 109426443 -53173487 + L1MB3 LINE L1 1268 1393 -5637 188 61 61 0 chrX 109426447 109426480 -53173450 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3354 213 21 55 chrX 109426494 109427411 -53172519 + L1MB3 LINE L1 4292 5094 -2012 1205 55 0 27 chrX 109427411 109427594 -53172336 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3354 213 21 55 chrX 109427594 109428001 -53171929 + L1MB3 LINE L1 5094 5513 -1593 999 163 10 0 chrX 109428013 109428209 -53171721 + L1PA15 LINE L1 3 200 -6663 * 13704 153 42 26 chrX 109428197 109430200 -53169730 + L1P5 LINE L1 621 2591 -4276 198 0 0 0 chrX 109430200 109430222 -53169708 + (CATCC)n Simple_repeat Simple_repeat 2 23 0 13704 153 42 26 chrX 109430222 109430382 -53169548 + L1P5 LINE L1 2591 2747 -4120 2074 105 0 18 chrX 109430382 109430668 -53169262 + AluSx SINE Alu 14 294 -18 13704 153 42 26 chrX 109430668 109434171 -53165759 + L1P5 LINE L1 2747 6402 -465 1993 116 0 31 chrX 109434171 109434464 -53165466 + AluSx SINE Alu 15 298 -14 1312 189 51 10 chrX 109434464 109435561 -53164369 + L1MB3 LINE L1 5511 7136 -7 1312 176 15 7 chrX 109435561 109435831 -53164099 + L1MB3 LINE L1 6866 7140 -3 5814 96 9 8 chrX 109436024 109436892 -53163038 - L1PA11 LINE L1 -3 6171 5303 6836 58 12 0 chrX 109436893 109437560 -53162370 - L1PA7 LINE L1 -5 6149 5492 2518 60 0 3 chrX 109437560 109437860 -53162070 - AluY SINE Alu -12 299 1 2250 82 0 23 chrX 109437861 109438166 -53161764 - AluY SINE Alu -13 298 1 6836 58 12 0 chrX 109438166 109438904 -53161026 - L1PA7 LINE L1 -661 5493 4745 1076 301 69 20 chrX 109439050 109439456 -53160474 + L2 LINE L2 2887 3312 -1 1175 248 24 0 chrX 109439847 109440145 -53159785 + L1PA15 LINE L1 371 675 -6177 1418 220 21 16 chrX 109440146 109440519 -53159411 + L1PA15 LINE L1 2731 3105 -3757 5427 174 15 6 chrX 109440520 109442136 -53157794 + L1PA15 LINE L1 4842 6469 -412 6985 137 25 0 chrX 109442138 109443237 -53156693 + L1M1 LINE L1 1045 2171 -5394 2523 170 0 0 chrX 109443238 109443662 -53156268 + L1PA15 LINE L1 6455 6878 -3 1474 214 14 51 chrX 109443664 109444174 -53155756 - L1M4 LINE L1 -2742 3902 3412 513 186 0 29 chrX 109444476 109444578 -53155352 - AluJ/FLAM SINE Alu -213 99 1 1109 210 43 58 chrX 109444589 109444918 -53155012 - L1M4 LINE L1 -6201 341 18 780 303 66 58 chrX 109445884 109446277 -53153653 - L3 LINE CR1 -3 1574 1179 848 248 0 52 chrX 109446314 109446524 -53153406 + MER63A DNA MER1_type 7 205 -5 189 121 0 0 chrX 109446961 109446994 -53152936 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1135 118 64 0 chrX 109447006 109447193 -53152737 - MER2 DNA MER2_type -139 206 8 536 203 79 73 chrX 109447799 109447976 -53151954 - MER5B DNA MER1_type 0 178 1 2106 193 35 17 chrX 109447994 109448475 -53151455 - MLT1D LTR MaLR 0 505 16 180 0 0 0 chrX 109448718 109448738 -53151192 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 17211 45 11 0 chrX 109450467 109453374 -53146556 + L1PA7 LINE L1 3221 6141 -13 183 42 0 0 chrX 109453398 109453422 -53146508 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1848 138 36 22 chrX 109453422 109453767 -53146163 + L1MB8 LINE L1 5821 6173 -5 318 248 83 37 chrX 109453838 109453947 -53145983 + MIR SINE MIR 25 138 -70 255 330 87 12 chrX 109454019 109454192 -53145738 + MIR SINE MIR 27 212 -50 625 260 49 14 chrX 109454407 109454630 -53145300 + MARNA DNA Mariner 207 437 -149 287 349 8 38 chrX 109454722 109454854 -53145076 - MIR SINE MIR -85 177 50 1396 147 52 33 chrX 109455375 109455681 -53144249 - MER33 DNA MER1_type -3 321 10 37 23 0 0 chrX 109455935 109455979 -53143951 + AT_rich Low_complexity Low_complexity 1 44 0 2247 123 0 0 chrX 109456524 109456826 -53143104 - AluSx SINE Alu -10 302 1 21 0 0 0 chrX 109457238 109457259 -53142671 + AT_rich Low_complexity Low_complexity 1 21 0 441 257 29 29 chrX 109457464 109457600 -53142330 - MIR3 SINE MIR -70 138 3 713 106 12 112 chrX 109458175 109458280 -53141650 + L1MB7 LINE L1 6023 6106 -78 1946 161 0 3 chrX 109458280 109458585 -53141345 - AluJo SINE Alu -8 304 1 713 106 12 112 chrX 109458585 109458649 -53141281 + L1MB7 LINE L1 6106 6175 -9 23 0 0 0 chrX 109458651 109458674 -53141256 + AT_rich Low_complexity Low_complexity 1 23 0 340 291 89 17 chrX 109459023 109459202 -53140728 - L1MEd LINE L1 -5924 195 4 914 286 0 5 chrX 109459855 109460079 -53139851 + MIR SINE MIR 24 246 -16 1102 210 65 129 chrX 109460260 109460570 -53139360 - MER34B LTR ERV1 0 565 237 607 108 0 0 chrX 109460570 109460653 -53139277 + L1PB3 LINE L1 6054 6136 -18 277 33 67 17 chrX 109460656 109460716 -53139214 + (TA)n Simple_repeat Simple_repeat 1 63 0 1102 210 65 129 chrX 109460716 109461005 -53138925 - MER34B LTR ERV1 -330 235 1 283 291 20 97 chrX 109461050 109461226 -53138704 - MIR SINE MIR -56 206 41 1874 148 0 16 chrX 109461226 109461543 -53138387 + AluSx SINE Alu 1 312 0 294 276 88 68 chrX 109463706 109463898 -53136032 + L2 LINE L2 2557 2752 -562 181 314 198 16 chrX 109464007 109464128 -53135802 + L2 LINE L2 3169 3311 -2 277 333 104 0 chrX 109464207 109464342 -53135588 - HAL1b LINE L1 -11 1337 1189 211 254 149 26 chrX 109465716 109465830 -53134100 + L2 LINE L2 2637 2764 -550 193 154 0 26 chrX 109470549 109470588 -53129342 - L2 LINE L2 -18 3295 3258 230 286 57 0 chrX 109470624 109470694 -53129236 - MIR SINE MIR -55 207 134 603 312 111 17 chrX 109471138 109471372 -53128558 - MIR SINE MIR -2 260 5 207 146 0 0 chrX 109471786 109471827 -53128103 + (CCCG)n Simple_repeat Simple_repeat 2 42 0 438 270 35 70 chrX 109472766 109472966 -53126964 - MIR SINE MIR -40 222 30 640 291 11 0 chrX 109473104 109473286 -53126644 - MIR SINE MIR 0 262 79 216 0 0 0 chrX 109473361 109473385 -53126545 + (A)n Simple_repeat Simple_repeat 1 24 0 835 184 29 11 chrX 109473450 109473624 -53126306 - MIR SINE MIR -8 254 78 233 243 37 88 chrX 109473629 109473765 -53126165 + L1ME4a LINE L1 5700 5828 -293 524 261 36 12 chrX 109473788 109473953 -53125977 + L1ME4a LINE L1 5933 6101 -20 23 54 0 0 chrX 109473959 109473996 -53125934 + AT_rich Low_complexity Low_complexity 1 37 0 650 292 45 45 chrX 109475061 109475304 -53124626 - MIR SINE MIR -3 259 17 409 291 17 8 chrX 109475302 109475419 -53124511 + L3 LINE CR1 1226 1343 -234 * 474 325 35 39 chrX 109475544 109475747 -53124183 + L3 LINE CR1 120 321 -1256 295 240 219 21 chrX 109476501 109476597 -53123333 + L3 LINE CR1 580 694 -883 296 207 112 117 chrX 109477054 109477233 -53122697 + MER5A DNA MER1_type 12 189 0 415 172 159 0 chrX 109477296 109477424 -53122506 + MIR SINE MIR 97 247 -15 1195 240 82 7 chrX 109478054 109478208 -53121722 + MER102b DNA MER1_type 1 142 -1286 369 0 0 0 chrX 109478208 109478249 -53121681 + (CA)n Simple_repeat Simple_repeat 2 42 0 258 32 0 0 chrX 109478248 109478279 -53121651 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1195 240 82 7 chrX 109478249 109478428 -53121502 + MER102b DNA MER1_type 142 327 -14 929 241 42 25 chrX 109478448 109478685 -53121245 + MIR SINE MIR 11 252 -10 1010 223 188 0 chrX 109478698 109478980 -53120950 + MER46C DNA MER2_type 4 338 0 286 226 21 75 chrX 109478980 109479073 -53120857 - MIR SINE MIR -105 157 70 536 214 73 97 chrX 109479203 109479409 -53120521 - MIR SINE MIR -23 239 39 882 259 95 0 chrX 109482956 109483188 -53116742 + MIR SINE MIR 9 262 0 193 322 149 16 chrX 109484018 109484139 -53115791 - MER5A DNA MER1_type -3 186 50 630 237 137 16 chrX 109484457 109484647 -53115283 + MIR SINE MIR 12 224 -38 777 169 6 12 chrX 109485304 109485476 -53114454 + CT-rich Low_complexity Low_complexity 4 174 0 480 311 147 48 chrX 109485724 109486618 -53113312 + L2 LINE L2 2245 3230 -42 241 229 36 36 chrX 109486634 109486717 -53113213 + MIR SINE MIR 123 205 -57 183 274 48 0 chrX 109486762 109486824 -53113106 - MIR SINE MIR -5 257 193 270 250 83 75 chrX 109487185 109487305 -53112625 + L2 LINE L2 3179 3299 -14 380 322 0 0 chrX 109487476 109487591 -53112339 + MIR SINE MIR 29 143 -65 288 0 0 0 chrX 109489141 109489173 -53110757 + (CA)n Simple_repeat Simple_repeat 1 32 0 1160 220 9 5 chrX 109489970 109490193 -53109737 + MIR SINE MIR 39 262 0 284 280 127 25 chrX 109490286 109490404 -53109526 - L2 LINE L2 0 3313 3184 853 259 121 3 chrX 109490406 109490703 -53109227 + L1MEd LINE L1 569 900 -5219 2077 93 13 16 chrX 109490714 109491027 -53108903 + AluSx SINE Alu 1 312 0 234 283 119 55 chrX 109491198 109491417 -53108513 - L2 LINE L2 -6 3307 3075 748 229 0 13 chrX 109491564 109491717 -53108213 + MER45A DNA AcHobo 24 174 -4 210 352 93 14 chrX 109491790 109492006 -53107924 - L2 LINE L2 -532 2782 2550 605 267 109 93 chrX 109492053 109492364 -53107566 - L2 LINE L2 -22 3250 2935 392 304 31 86 chrX 109492401 109492760 -53107170 - L2 LINE L2 -109 3163 2825 854 181 41 18 chrX 109492805 109492976 -53106954 - MER5B DNA MER1_type 0 178 4 713 184 58 23 chrX 109492992 109493166 -53106764 - MER5A DNA MER1_type -5 184 5 628 309 44 44 chrX 109493206 109493523 -53106407 - L2 LINE L2 -568 2746 2430 324 48 0 0 chrX 109494474 109494516 -53105414 + (TG)n Simple_repeat Simple_repeat 1 42 0 327 152 61 30 chrX 109494542 109494608 -53105322 + L2 LINE L2 3204 3271 -1 915 244 70 16 chrX 109494663 109494905 -53105025 + MIR SINE MIR 8 262 0 416 242 248 7 chrX 109495461 109495614 -53104316 + MIR SINE MIR 69 258 -4 193 316 94 17 chrX 109495640 109495757 -53104173 - MIR3 SINE MIR -79 129 4 252 184 0 0 chrX 109496148 109496197 -53103733 + (TAG)n Simple_repeat Simple_repeat 2 50 0 783 220 48 29 chrX 109496299 109496508 -53103422 + MIR SINE MIR 36 248 -14 370 32 48 32 chrX 109497073 109497136 -53102794 + (TTCTCC)n Simple_repeat Simple_repeat 4 67 0 2270 99 0 0 chrX 109497139 109497451 -53102479 - AluSq SINE Alu -1 312 1 328 290 32 0 chrX 109498336 109498429 -53101501 - MIR SINE MIR -1 261 166 398 386 28 0 chrX 109500158 109500303 -53099627 - L2 LINE L2 0 3272 3124 1171 226 4 8 chrX 109500393 109500636 -53099294 + MIR SINE MIR 7 248 -14 967 307 62 22 chrX 109500872 109501289 -53098641 - L2 LINE L2 -30 3283 2850 252 213 5 58 chrX 109501267 109501364 -53098566 - MIR SINE MIR -65 143 92 * 189 186 70 0 chrX 109501362 109501405 -53098525 + L2 LINE L2 3219 3264 -8 * 260 320 69 57 chrX 109502386 109502561 -53097369 + L2 LINE L2 2926 3102 -170 271 326 72 14 chrX 109502631 109502769 -53097161 + MIR SINE MIR 116 261 -1 397 204 24 108 chrX 109502844 109503011 -53096919 + MIR SINE MIR 84 236 -26 221 279 39 77 chrX 109503062 109503166 -53096764 + L2 LINE L2 3169 3268 -4 817 282 9 9 chrX 109503945 109504161 -53095769 + MIR SINE MIR 42 257 -5 380 262 129 48 chrX 109504243 109504453 -53095477 + MIR SINE MIR 34 260 -2 188 83 0 28 chrX 109505264 109505300 -53094630 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 343 289 86 37 chrX 109505320 109505507 -53094423 - L2 LINE L2 -45 3227 3032 432 330 84 44 chrX 109505552 109505873 -53094057 - L2 LINE L2 -410 2904 2571 * 771 293 5 0 chrX 109505870 109506058 -53093872 + MIR SINE MIR 63 251 -11 227 136 45 23 chrX 109506131 109506175 -53093755 - MIR SINE MIR -187 75 31 569 332 22 31 chrX 109506219 109506442 -53093488 - L2 LINE L2 -2041 1273 1053 * 722 217 76 45 chrX 109506441 109506639 -53093291 + MIR SINE MIR 29 232 -30 515 310 48 70 chrX 109506882 109507508 -53092422 - L2 LINE L2 -2618 696 85 356 240 84 31 chrX 109507621 109507834 -53092096 - L1ME4a LINE L1 -115 6006 5772 833 254 95 13 chrX 109507836 109508068 -53091862 - MIR SINE MIR 0 262 12 782 262 163 36 chrX 109508077 109508554 -53091376 - L1ME4a LINE L1 -581 5540 5270 720 281 47 0 chrX 109508554 109508746 -53091184 - L2 LINE L2 -2 3311 3111 347 246 53 64 chrX 109508970 109509141 -53090789 - L1P LINE L1 -1092 5054 4886 307 319 0 35 chrX 109509144 109509257 -53090673 - MIR SINE MIR -73 135 27 371 285 35 49 chrX 109510290 109510410 -53089520 + MIR3 SINE MIR 35 152 -56 459 248 25 56 chrX 109510410 109510593 -53089337 + MER5A DNA MER1_type 2 189 0 2052 247 123 18 chrX 109511480 109512188 -53087742 - MER20B DNA MER1_type 0 784 3 434 268 207 24 chrX 109512813 109513026 -53086904 + MIR SINE MIR 8 259 -3 241 211 19 0 chrX 109513657 109513709 -53086221 - L2 LINE L2 0 3313 3261 5002 73 14 0 chrX 109513751 109514382 -53085548 + L1PA7 LINE L1 5514 6153 -1 742 319 13 4 chrX 109514645 109514871 -53085059 + MIR SINE MIR 15 242 -20 534 252 223 13 chrX 109516183 109516421 -53083509 + L3b LINE CR1 1106 1393 -190 185 271 85 0 chrX 109516514 109516573 -53083357 - L2 LINE L2 -107 3165 3102 1248 231 36 4 chrX 109516589 109516870 -53083060 - MER46C DNA MER2_type -48 290 1 255 191 0 0 chrX 109517006 109517069 -53082861 + (TG)n Simple_repeat Simple_repeat 2 64 0 674 307 84 5 chrX 109518603 109518818 -53081112 - MIR SINE MIR -3 259 28 331 265 137 98 chrX 109519276 109519510 -53080420 + MIR SINE MIR 9 251 -11 372 297 165 44 chrX 109519658 109519907 -53080023 - L2 LINE L2 -61 3211 2933 704 272 22 31 chrX 109521107 109521335 -53078595 + MIR SINE MIR 21 246 -16 278 217 17 17 chrX 109521385 109521445 -53078485 + MIR SINE MIR 18 77 -131 651 321 0 5 chrX 109521465 109521661 -53078269 - MER117 DNA MER1_type -1 196 2 319 188 16 0 chrX 109521871 109521935 -53077995 + MIR SINE MIR 66 130 -132 642 203 10 9 chrX 109521935 109522076 -53077854 + L1MD3 LINE L1 7872 8042 0 796 230 63 40 chrX 109522676 109523150 -53076780 + LTR33A LTR ERVL 2 520 -3 331 298 79 0 chrX 109523731 109523845 -53076085 + MIR SINE MIR 24 146 -116 434 181 177 53 chrX 109524027 109524270 -53075660 + L1MC5 LINE L1 7645 7917 -44 686 263 51 18 chrX 109524876 109525093 -53074837 + MIR SINE MIR 31 254 -8 242 287 28 42 chrX 109525703 109525836 -53074094 - MIR SINE MIR -65 143 15 3758 123 19 59 chrX 109525853 109526027 -53073903 - MER6 DNA MER2_type 0 865 686 1497 93 0 15 chrX 109526027 109526258 -53073672 + AluJb SINE Alu 84 311 0 3758 123 19 59 chrX 109526258 109526725 -53073205 - MER6 DNA MER2_type -179 686 249 450 226 32 0 chrX 109526725 109526818 -53073112 - MER6 DNA MER2_type -769 96 1 675 248 108 19 chrX 109526933 109527147 -53072783 + MIR SINE MIR 15 247 -15 628 271 179 0 chrX 109527149 109527356 -53072574 - MIR SINE MIR -1 261 18 1870 158 3 23 chrX 109527914 109528224 -53071706 + AluJo SINE Alu 1 304 -8 25 65 0 0 chrX 109530101 109530147 -53069783 + AT_rich Low_complexity Low_complexity 1 46 0 286 197 8 49 chrX 109530675 109530797 -53069133 + CT-rich Low_complexity Low_complexity 4 120 0 258 262 0 16 chrX 109531058 109531119 -53068811 - MIR SINE MIR -133 75 16 485 167 97 56 chrX 109531266 109531410 -53068520 - MER103 DNA DNA -13 153 4 1275 141 5 21 chrX 109531709 109531901 -53068029 + MER5A DNA MER1_type 1 189 0 2496 52 7 19 chrX 109532332 109532639 -53067291 + AluY SINE Alu 1 303 -8 282 241 32 104 chrX 109532755 109532906 -53067024 + MIR SINE MIR 20 159 -61 521 271 77 24 chrX 109533057 109533227 -53066703 - Charlie8 DNA MER1_type -2238 179 1 215 294 183 65 chrX 109533559 109533712 -53066218 + L2 LINE L2 3094 3264 -8 3228 158 32 81 chrX 109533814 109534826 -53065104 + L1MB7 LINE L1 5151 6157 -9 1750 130 12 78 chrX 109534834 109535180 -53064750 + L1MB7 LINE L1 5861 6183 -1 1130 252 4 20 chrX 109535181 109535435 -53064495 - MIR SINE MIR -8 254 5 780 219 118 21 chrX 109535990 109536227 -53063703 - MIR SINE MIR -1 261 2 203 256 150 69 chrX 109536231 109536391 -53063539 - L2 LINE L2 -11 3302 3130 711 251 217 0 chrX 109536458 109536665 -53063265 - MIR SINE MIR -10 252 1 506 346 30 34 chrX 109536714 109536980 -53062950 - L2 LINE L2 -181 3091 2827 769 126 0 0 chrX 109538475 109538586 -53061344 - L1PA16 LINE L1 -5 6161 6051 4835 156 31 4 chrX 109538592 109540199 -53059731 - L1PA16 LINE L1 -179 5987 4345 547 291 75 14 chrX 109540438 109540651 -53059279 + MIR SINE MIR 35 260 -2 305 351 67 44 chrX 109541825 109542212 -53057718 - L2 LINE L2 -368 2946 2551 2602 7 0 0 chrX 109542464 109542743 -53057187 - AluY SINE Alu -6 305 27 491 270 150 30 chrX 109543630 109543830 -53056100 - MIR SINE MIR -3 259 36 303 132 48 0 chrX 109544170 109544235 -53055695 + MER45 DNA AcHobo 1511 1581 0 338 339 16 8 chrX 109544235 109544359 -53055571 - L3 LINE CR1 -125 1452 1328 332 286 61 54 chrX 109544354 109544501 -53055429 + MIR SINE MIR 25 172 -90 * 25 0 0 0 chrX 109544767 109544792 -53055138 + AT_rich Low_complexity Low_complexity 1 25 0 192 111 0 0 chrX 109544917 109544953 -53054977 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 488 311 8 0 chrX 109544953 109545075 -53054855 - L2 LINE L2 0 3272 3150 367 288 36 9 chrX 109545079 109545190 -53054740 - MIR SINE MIR -68 140 27 636 270 4 84 chrX 109545883 109546109 -53053821 + L3 LINE CR1 824 1031 -546 292 195 22 3 chrX 109546160 109546228 -53053702 + L1MC4a LINE L1 5603 5668 -460 * 449 260 42 131 chrX 109546227 109547224 -53052706 - L1MEd LINE L1 -1045 1445 442 921 231 87 8 chrX 109547265 109547507 -53052423 + MIR SINE MIR 2 262 0 231 275 99 30 chrX 109547683 109547814 -53052116 - L1MEd LINE L1 -5922 197 58 485 238 94 60 chrX 109547819 109548210 -53051720 + L1MC4a LINE L1 5707 6117 -4 1489 225 56 89 chrX 109548516 109548930 -53051000 - LTR33 LTR ERVL -1 520 94 2291 84 45 0 chrX 109548930 109549240 -53050690 + L1MA1 LINE L1 5979 6302 0 1489 225 56 89 chrX 109549240 109549321 -53050609 - LTR33 LTR ERVL -427 94 42 529 90 39 0 chrX 109549321 109549399 -53050531 + L1MC1 LINE L1 6248 6328 -5 1489 225 56 89 chrX 109549399 109549440 -53050490 - LTR33 LTR ERVL -479 42 1 240 235 29 15 chrX 109549756 109549824 -53050106 + Charlie8 DNA MER1_type 1347 1415 -1002 279 294 63 16 chrX 109549862 109549988 -53049942 + L3 LINE CR1 1158 1289 -288 2146 131 0 0 chrX 109549988 109550294 -53049636 + AluSq SINE Alu 1 306 -7 287 227 15 15 chrX 109550406 109550472 -53049458 + L3 LINE CR1 1305 1370 -207 386 224 13 18 chrX 109550867 109551025 -53048905 - L2 LINE L2 -531 2783 2554 2198 123 0 0 chrX 109551136 109551446 -53048484 - AluY SINE Alu -1 310 1 221 353 85 26 chrX 109551449 109551602 -53048328 + L3 LINE CR1 1374 1535 -42 209 204 0 23 chrX 109551676 109551720 -53048210 - MIR SINE MIR -1 261 219 * 4151 261 206 15 chrX 109551689 109552356 -53047574 - L2 LINE L2 -19 3294 2755 1396 213 46 3 chrX 109552356 109552478 -53047452 + AluJo SINE Alu 1 116 -196 405 0 0 0 chrX 109552478 109552523 -53047407 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1396 213 46 3 chrX 109552523 109552682 -53047248 + AluJo SINE Alu 116 294 -18 4151 261 206 15 chrX 109552682 109553936 -53045994 - L2 LINE L2 -558 2755 974 298 313 54 9 chrX 109554132 109554244 -53045686 - MER103 DNA DNA -49 117 1 339 298 19 10 chrX 109554627 109554731 -53045199 - MIR SINE MIR -11 251 147 244 143 48 0 chrX 109554861 109554903 -53045027 - MIR3 SINE MIR -5 203 160 492 295 7 34 chrX 109555172 109555321 -53044609 - MER5A DNA MER1_type 0 189 45 1581 194 106 39 chrX 109556102 109556535 -53043395 + MLT1C LTR MaLR 6 467 0 535 183 8 48 chrX 109556552 109556678 -53043252 + MIR SINE MIR 92 212 -50 199 294 176 10 chrX 109557329 109557431 -53042499 + L2 LINE L2 3144 3262 -10 754 317 32 9 chrX 109557458 109557679 -53042251 + MIR SINE MIR 29 254 -8 22 0 0 0 chrX 109558340 109558362 -53041568 + AT_rich Low_complexity Low_complexity 1 22 0 921 247 93 43 chrX 109558386 109558500 -53041430 - L2 LINE L2 0 3313 3206 1061 220 72 0 chrX 109558500 109558709 -53041221 + MER58A DNA MER1_type 1 224 0 921 247 93 43 chrX 109558709 109558918 -53041012 - L2 LINE L2 -107 3206 2974 2206 217 81 65 chrX 109558923 109559615 -53040315 - L2 LINE L2 -507 2807 2105 425 314 23 11 chrX 109559589 109559764 -53040166 + L2 LINE L2 2473 2649 -665 * 678 346 48 27 chrX 109559797 109560132 -53039798 + L2 LINE L2 2366 2707 -607 22 56 0 0 chrX 109560834 109560870 -53039060 + AT_rich Low_complexity Low_complexity 1 36 0 358 296 114 26 chrX 109560891 109561029 -53038901 + MIR SINE MIR 2 145 -63 1006 205 13 55 chrX 109561295 109561539 -53038391 + MIR SINE MIR 9 241 -21 634 308 92 4 chrX 109561852 109562092 -53037838 + MIR SINE MIR 1 261 -1 184 175 0 50 chrX 109562370 109562410 -53037520 + MER5B DNA MER1_type 1 38 -140 24 32 0 0 chrX 109562410 109562441 -53037489 + AT_rich Low_complexity Low_complexity 1 31 0 632 308 25 5 chrX 109563568 109563766 -53036164 + MIR SINE MIR 5 206 -56 5074 153 20 38 chrX 109563792 109564048 -53035882 - L1MA7 LINE L1 -3 6288 6029 2164 117 0 7 chrX 109564048 109564346 -53035584 + AluSx SINE Alu 7 302 -10 5074 153 20 38 chrX 109564346 109565081 -53034849 - L1MA7 LINE L1 -262 6029 5315 1120 207 0 9 chrX 109565093 109565310 -53034620 - AluJo SINE Alu -26 286 72 5416 164 37 22 chrX 109565310 109565901 -53034029 - L1MA7 LINE L1 -815 5331 4715 1971 156 36 6 chrX 109565901 109566235 -53033695 + MER2 DNA MER2_type 1 344 0 5416 164 37 22 chrX 109566235 109566728 -53033202 - L1MA7 LINE L1 -1431 4715 4231 3243 181 32 15 chrX 109566740 109567481 -53032449 + L1 LINE L1 2699 3452 -2694 324 263 178 0 chrX 109567534 109567652 -53032278 + L2 LINE L2 3175 3313 0 5672 183 48 20 chrX 109567755 109569496 -53030434 - L1MB8 LINE L1 0 6178 4363 1780 155 0 21 chrX 109569496 109569812 -53030118 - AluJb SINE Alu 0 310 1 5672 183 48 20 chrX 109569812 109570201 -53029729 - L1MB8 LINE L1 -1815 4363 3986 563 163 92 114 chrX 109570627 109570811 -53029119 + MIR SINE MIR 41 220 -42 694 191 30 33 chrX 109570978 109571260 -53028670 + MLT1A1 LTR MaLR 5 363 -2 289 354 140 0 chrX 109571261 109571425 -53028505 + MIR SINE MIR 76 262 0 200 200 18 36 chrX 109571708 109571763 -53028167 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 275 310 45 7 chrX 109571763 109571918 -53028012 - L1MC4a LINE L1 -1878 5930 5770 271 180 0 0 chrX 109573374 109573424 -53026506 - L2 LINE L2 0 3313 3264 378 229 56 55 chrX 109574061 109574227 -53025703 - L1P5 LINE L1 -697 5459 5293 1000 150 83 0 chrX 109574759 109574939 -53024991 - L1PA16 LINE L1 -9 6157 5963 21 36 0 0 chrX 109574966 109574994 -53024936 + AT_rich Low_complexity Low_complexity 1 28 0 15519 38 0 0 chrX 109574994 109577640 -53022290 - L1PA5 LINE L1 -5 6149 3504 2333 92 0 3 chrX 109577827 109578121 -53021809 + AluSg SINE Alu 1 293 -17 967 94 106 6 chrX 109578218 109578378 -53021552 - Tigger7 DNA MER2_type -38 2453 2278 * 2646 163 7 11 chrX 109578376 109578409 -53021521 - Tigger7 DNA MER2_type -298 435 403 1896 134 20 16 chrX 109578409 109578714 -53021216 - AluJb SINE Alu -6 306 1 2646 163 7 11 chrX 109578714 109579116 -53020814 - Tigger7 DNA MER2_type -330 403 2 583 296 112 19 chrX 109579773 109579979 -53019951 - MIR SINE MIR -6 256 32 782 243 42 80 chrX 109580212 109580475 -53019455 - MIR SINE MIR 0 262 10 438 20 0 0 chrX 109580476 109580527 -53019403 + (TG)n Simple_repeat Simple_repeat 2 52 0 2358 97 3 0 chrX 109580701 109581012 -53018918 + AluSp SINE Alu 1 312 -1 255 31 0 0 chrX 109581063 109581095 -53018835 + (T)n Simple_repeat Simple_repeat 1 32 0 4186 144 14 4 chrX 109582252 109582961 -53016969 - L1MB3 LINE L1 -8 6175 5460 204 171 0 0 chrX 109583196 109583231 -53016699 - L2 LINE L2 -16 3297 3263 * 950 227 13 34 chrX 109583204 109583442 -53016488 - MIR SINE MIR -18 244 12 1757 131 94 0 chrX 109583786 109583931 -53015999 - AluSx SINE Alu -18 294 164 281 24 49 0 chrX 109583931 109583972 -53015958 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 1757 131 94 0 chrX 109583972 109584093 -53015837 - AluSx SINE Alu -148 164 3 247 130 0 65 chrX 109584135 109584181 -53015749 + MER113 DNA MER1_type? 453 495 -26 197 234 0 21 chrX 109584205 109584252 -53015678 + MIR3 SINE MIR 152 197 -11 471 245 210 66 chrX 109584467 109584724 -53015206 + L2 LINE L2 3017 3310 -3 203 220 160 0 chrX 109584882 109584932 -53014998 - L2 LINE L2 -2 3311 3254 371 242 84 0 chrX 109584988 109585083 -53014847 - L2 LINE L2 -1 3312 3210 645 251 112 11 chrX 109585291 109585478 -53014452 - MIR SINE MIR -33 229 24 688 254 19 0 chrX 109586273 109586506 -53013424 + L1 LINE L1 5076 5313 -847 234 0 0 0 chrX 109586506 109586532 -53013398 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 5398 51 12 9 chrX 109586532 109587215 -53012715 - L1PA7 LINE L1 -24 6130 5446 22 0 0 0 chrX 109587921 109587943 -53011987 + AT_rich Low_complexity Low_complexity 1 22 0 738 354 135 40 chrX 109588424 109589705 -53010225 - L2 LINE L2 -165 3107 1703 1451 196 59 3 chrX 109589792 109590098 -53009832 - MER5C DNA MER1_type 0 324 2 265 328 55 52 chrX 109590227 109590517 -53009413 - L2 LINE L2 -1878 1436 1146 3947 77 37 9 chrX 109590605 109591176 -53008754 - Tigger4(Zombi) DNA MER2_type -122 2609 2023 6777 50 6 1 chrX 109591176 109592028 -53007902 + L1PA7 LINE L1 5299 6154 0 201 147 0 0 chrX 109592044 109592078 -53007852 + (A)n Simple_repeat Simple_repeat 1 34 0 313 306 164 0 chrX 109592146 109592280 -53007650 - MIR SINE MIR -37 225 70 186 103 0 0 chrX 109592733 109592762 -53007168 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2525 318 92 4 chrX 109592799 109593810 -53006120 + L2 LINE L2 1701 2800 -514 5803 194 49 73 chrX 109593828 109594205 -53005725 + L1MB7 LINE L1 2591 2976 -3170 2141 127 0 7 chrX 109594205 109594512 -53005418 + AluSx SINE Alu 1 305 -7 5803 194 49 73 chrX 109594512 109595058 -53004872 + L1MB7 LINE L1 2976 3534 -2612 1427 127 101 0 chrX 109595058 109595325 -53004605 + L1MA3 LINE L1 6005 6298 -7 5803 194 49 73 chrX 109595325 109596200 -53003730 + L1MB7 LINE L1 3534 4344 -1802 2210 104 24 0 chrX 109596200 109596489 -53003441 + AluSx SINE Alu 1 296 -16 5803 194 49 73 chrX 109596489 109596578 -53003352 + L1MB7 LINE L1 4344 4434 -1712 2975 175 39 8 chrX 109596613 109596716 -53003214 + L1MB7 LINE L1 5540 5638 -546 202 56 56 0 chrX 109596716 109596752 -53003178 + (AAATG)n Simple_repeat Simple_repeat 3 40 0 2975 175 39 8 chrX 109596752 109597258 -53002672 + L1MB7 LINE L1 5638 6168 -16 578 231 172 6 chrX 109600670 109600839 -52999091 + MIR SINE MIR 2 198 -64 180 317 72 66 chrX 109600903 109601070 -52998860 + L2 LINE L2 3146 3313 0 192 40 0 0 chrX 109602154 109602179 -52997751 + (CTGGGG)n Simple_repeat Simple_repeat 5 29 0 29 70 0 0 chrX 109602287 109602344 -52997586 + GC_rich Low_complexity Low_complexity 1 57 0 987 143 5 63 chrX 109605924 109606113 -52993817 - MER5B DNA MER1_type 0 178 1 221 327 75 9 chrX 109606124 109606231 -52993699 - MER5B DNA MER1_type -63 115 2 562 196 193 2 chrX 109606238 109606371 -52993559 + MER5A DNA MER1_type 17 183 -6 1040 159 22 0 chrX 109606375 109606557 -52993373 - MER5A DNA MER1_type -3 186 1 215 315 16 31 chrX 109610145 109610272 -52989658 - L2 LINE L2 -829 2485 2361 2155 125 0 22 chrX 109612320 109612639 -52987291 + AluJb SINE Alu 1 312 0 2095 120 0 26 chrX 109613233 109613541 -52986389 - AluSx SINE Alu -12 300 1 304 140 140 25 chrX 109613542 109613630 -52986300 - L1MB1 LINE L1 0 6168 6077 2372 94 3 0 chrX 109613739 109614047 -52985883 + AluSp SINE Alu 1 309 -4 2327 59 3 43 chrX 109614173 109614497 -52985433 - AluY SINE Alu 0 311 1 1271 131 0 30 chrX 109614500 109614699 -52985231 - AluSg/x SINE Alu -16 296 104 2274 100 0 22 chrX 109617587 109617906 -52982024 - AluSx SINE Alu 0 312 1 2191 187 98 8 chrX 109618925 109619619 -52980311 + L1M4 LINE L1 312 1250 -5292 4506 126 48 10 chrX 109620144 109620974 -52978956 + L1MA9 LINE L1 5333 6290 -22 222 109 43 22 chrX 109621454 109621515 -52978415 + (AAATG)n Simple_repeat Simple_repeat 1 62 0 3690 216 95 15 chrX 109622752 109624783 -52975147 + L1M4 LINE L1 16 2505 -4320 23 54 0 0 chrX 109625194 109625231 -52974699 + AT_rich Low_complexity Low_complexity 1 37 0 286 51 0 0 chrX 109625636 109625675 -52974255 - MADE1 DNA Mariner 0 80 42 29 70 0 0 chrX 109626387 109626444 -52973486 + AT_rich Low_complexity Low_complexity 1 57 0 229 365 83 31 chrX 109626485 109626581 -52973349 - L2 LINE L2 -62 3210 3110 192 333 202 12 chrX 109626960 109627044 -52972886 - L2 LINE L2 -30 3242 3143 344 258 16 62 chrX 109627390 109627473 -52972457 - L1MC4a LINE L1 -1873 5935 5859 4881 138 36 4 chrX 109627473 109628278 -52971652 - L1MC1 LINE L1 0 6333 5503 344 258 16 62 chrX 109628278 109628322 -52971608 - L1MC4a LINE L1 -1949 5859 5814 568 229 77 0 chrX 109628323 109628493 -52971437 - L1MD3 LINE L1 0 7995 7813 331 208 91 0 chrX 109628503 109628580 -52971350 - L1MC4a LINE L1 -302 5819 5736 412 333 61 9 chrX 109628628 109628742 -52971188 - MER91A DNA MER1_type 0 196 77 2006 118 3 14 chrX 109628969 109629256 -52970674 - AluSx SINE Alu -28 284 1 37 23 0 0 chrX 109629869 109629913 -52970017 + AT_rich Low_complexity Low_complexity 1 44 0 254 304 62 106 chrX 109632390 109632617 -52967313 + L2 LINE L2 3045 3261 -11 2076 133 0 7 chrX 109633808 109634109 -52965821 - AluJb SINE Alu -13 299 1 348 285 124 0 chrX 109634764 109634901 -52965029 - MIR SINE MIR -7 255 102 629 141 146 75 chrX 109635104 109635279 -52964651 - MER5A DNA MER1_type 0 189 1 504 331 0 0 chrX 109635296 109635423 -52964507 - L2 LINE L2 -5 3308 3182 192 261 145 0 chrX 109635517 109635586 -52964344 - L2 LINE L2 -252 3061 2983 2319 102 0 13 chrX 109636342 109636657 -52963273 - AluSx SINE Alu -1 311 1 23 0 0 0 chrX 109636659 109636682 -52963248 + AT_rich Low_complexity Low_complexity 1 23 0 1894 179 34 14 chrX 109636726 109637084 -52962846 + MLT1A1 LTR MaLR 1 365 0 211 308 39 13 chrX 109637532 109637610 -52962320 + MIR SINE MIR 31 110 -152 23 0 0 0 chrX 109637826 109637849 -52962081 + AT_rich Low_complexity Low_complexity 1 23 0 414 223 287 0 chrX 109638526 109638683 -52961247 - L2 LINE L2 -1 3312 3111 510 270 25 6 chrX 109639459 109639618 -52960312 + L1ME4a LINE L1 5552 5713 -408 682 230 176 10 chrX 109639619 109639932 -52959998 + L1ME4a LINE L1 5757 6121 0 1180 205 15 27 chrX 109640217 109640476 -52959454 + MIR SINE MIR 7 262 0 25 31 0 0 chrX 109642214 109642246 -52957684 + AT_rich Low_complexity Low_complexity 1 32 0 2216 57 10 14 chrX 109642916 109643213 -52956717 - L1PA5 LINE L1 0 6154 5859 1402 286 27 50 chrX 109643327 109643924 -52956006 + L1MEc LINE L1 35 617 -5779 4460 247 66 20 chrX 109643965 109644637 -52955293 + L1MEc LINE L1 705 1345 -4870 2212 102 3 0 chrX 109644637 109644948 -52954982 - AluSp SINE Alu 0 312 1 4460 247 66 20 chrX 109644948 109646302 -52953628 + L1MEc LINE L1 1345 2771 -3444 4981 163 35 13 chrX 109646302 109647981 -52951949 + L1PB4 LINE L1 4441 6152 -4 36 19 0 19 chrX 109648245 109648274 -52951656 + AT_rich Low_complexity Low_complexity 1 30 -23 2214 68 32 4 chrX 109648274 109648554 -52951376 - AluY SINE Alu -23 288 1 36 19 0 19 chrX 109648554 109648578 -52951352 + AT_rich Low_complexity Low_complexity 30 53 0 254 331 92 35 chrX 109650034 109650176 -52949754 + MIR3 SINE MIR 32 181 -27 1181 218 35 81 chrX 109650241 109650636 -52949294 + MLT1B LTR MaLR 1 377 -13 23 0 0 0 chrX 109651000 109651023 -52948907 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chrX 109653076 109653109 -52946821 + AT_rich Low_complexity Low_complexity 1 33 0 5430 56 6 4 chrX 109653117 109653810 -52946120 + L1PA7 LINE L1 5461 6154 0 2240 103 7 0 chrX 109653816 109654116 -52945814 + AluSg SINE Alu 1 302 -8 362 260 245 39 chrX 109655508 109655716 -52944214 + MIR SINE MIR 1 251 -11 268 274 186 20 chrX 109655760 109655862 -52944068 + L2 LINE L2 3150 3268 -4 595 226 44 6 chrX 109657465 109657624 -52942306 + MER103 DNA DNA 1 165 -1 183 184 0 0 chrX 109658141 109658179 -52941751 + (TG)n Simple_repeat Simple_repeat 2 39 0 772 236 118 5 chrX 109658443 109658663 -52941267 - MIR SINE MIR -2 260 16 212 56 83 0 chrX 109659109 109659145 -52940785 + A-rich Low_complexity Low_complexity 2 40 0 3197 121 13 11 chrX 109659271 109659793 -52940137 - L1MB3 LINE L1 0 6183 5661 46 19 0 0 chrX 109659918 109659971 -52939959 + AT_rich Low_complexity Low_complexity 1 53 0 22 56 0 0 chrX 109660060 109660096 -52939834 + AT_rich Low_complexity Low_complexity 1 36 0 2438 50 27 7 chrX 109660614 109660915 -52939015 + AluY SINE Alu 1 307 -4 2126 145 30 3 chrX 109664142 109664480 -52935450 + MER7A DNA MER2_type 2 346 0 249 235 0 0 chrX 109667207 109667258 -52932672 + L2 LINE L2 2737 2787 -527 1421 231 98 63 chrX 109667268 109667793 -52932137 + L2 LINE L2 2757 3312 -1 802 177 0 7 chrX 109668055 109668196 -52931734 - FLAM_C SINE Alu -3 140 1 542 287 113 5 chrX 109668273 109668468 -52931462 + MIR SINE MIR 37 252 -10 224 297 221 14 chrX 109668766 109668988 -52930942 + L2 LINE L2 2511 2778 -536 418 355 99 14 chrX 109669023 109669305 -52930625 + L2 LINE L2 2862 3167 -105 509 309 22 11 chrX 109669637 109669815 -52930115 - L3 LINE CR1 -8 1569 1390 181 119 0 143 chrX 109670190 109670232 -52929698 - MIR SINE MIR -134 74 39 242 66 82 33 chrX 109670541 109670602 -52929328 + CT-rich Low_complexity Low_complexity 4 67 0 2211 88 0 0 chrX 109670604 109670877 -52929053 - AluSc SINE Alu -36 273 1 529 291 126 5 chrX 109670951 109671157 -52928773 - MIR SINE MIR -30 232 2 291 83 0 0 chrX 109671532 109671568 -52928362 - U2 snRNA snRNA -152 36 1 1914 170 3 3 chrX 109672082 109672393 -52927537 - AluJb SINE Alu -1 311 1 2002 144 0 0 chrX 109672782 109673088 -52926842 - AluSq SINE Alu -7 306 1 878 150 0 0 chrX 109673088 109673221 -52926709 - AluJb SINE Alu -177 135 3 210 314 110 42 chrX 109673843 109673961 -52925969 + L2 LINE L2 3133 3258 -14 302 389 53 42 chrX 109675768 109676051 -52923879 - L2 LINE L2 -17 3255 2970 246 329 88 49 chrX 109676182 109676489 -52923441 - L2 LINE L2 -622 2692 2374 39 0 0 0 chrX 109676669 109676708 -52923222 + AT_rich Low_complexity Low_complexity 1 39 0 1546 47 0 0 chrX 109678784 109678975 -52920955 - L1PA7 LINE L1 -110 6044 5854 * 17657 112 9 58 chrX 109678962 109682082 -52917848 - L1P LINE L1 -2709 3437 471 21 0 0 0 chrX 109683401 109683422 -52916508 + AT_rich Low_complexity Low_complexity 1 21 0 386 238 119 10 chrX 109683831 109683932 -52915998 - L2 LINE L2 -1 3312 3201 205 205 0 0 chrX 109684087 109684126 -52915804 + T-rich Low_complexity Low_complexity 1 39 0 302 98 0 0 chrX 109684276 109684317 -52915613 + L2 LINE L2 3264 3304 -9 38087 82 12 8 chrX 109684522 109687579 -52912351 - L1PA6 LINE L1 0 6154 3109 2600 62 0 0 chrX 109687579 109687888 -52912042 - AluY SINE Alu -2 309 1 38087 82 12 8 chrX 109687888 109690966 -52908964 - L1PA6 LINE L1 -3045 3109 3 396 228 162 36 chrX 109692002 109692169 -52907761 + MIR3 SINE MIR 20 207 -1 400 257 171 104 chrX 109693802 109693860 -52906070 + MIR SINE MIR 20 73 -189 2314 105 0 10 chrX 109693860 109694173 -52905757 - AluSg SINE Alu 0 310 1 400 257 171 104 chrX 109694173 109694336 -52905594 + MIR SINE MIR 73 256 -6 1537 240 51 116 chrX 109694424 109694750 -52905180 + Charlie7 DNA MER1_type 27 284 -2328 1047 160 113 9 chrX 109694750 109694963 -52904967 + MER46A DNA MER2_type 1 235 -1 1537 240 51 116 chrX 109694963 109695345 -52904585 + Charlie7 DNA MER1_type 284 689 -1923 368 196 65 11 chrX 109695343 109695435 -52904495 + Charlie7 DNA MER1_type 2508 2604 -8 * 23 68 0 0 chrX 109695518 109695562 -52904368 + AT_rich Low_complexity Low_complexity 1 44 0 216 0 0 0 chrX 109695662 109695686 -52904244 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chrX 109695945 109695974 -52903956 + AT_rich Low_complexity Low_complexity 1 29 0 715 313 9 19 chrX 109696446 109696660 -52903270 - MIR SINE MIR -50 212 1 335 280 16 44 chrX 109697692 109697874 -52902056 + CT-rich Low_complexity Low_complexity 2 178 0 7297 20 7 0 chrX 109697894 109698748 -52901182 - L1PA2 LINE L1 -3 6152 5293 22 0 0 0 chrX 109698832 109698854 -52901076 + AT_rich Low_complexity Low_complexity 1 22 0 331 314 10 10 chrX 109700286 109700388 -52899542 + MIR SINE MIR 30 131 -77 4108 138 18 6 chrX 109701168 109701876 -52898054 + L1MB7 LINE L1 5468 6184 0 1133 141 35 0 chrX 109701938 109702137 -52897793 + L1MB3 LINE L1 5977 6182 -1 351 0 0 0 chrX 109702955 109702994 -52896936 + (TG)n Simple_repeat Simple_repeat 2 40 0 279 236 0 0 chrX 109703398 109703423 -52896507 + (TA)n Simple_repeat Simple_repeat 1 71 0 238 152 0 0 chrX 109703423 109703469 -52896461 - L1MC4 LINE L1 -1339 6703 6658 194 200 0 0 chrX 109704712 109704747 -52895183 - L2 LINE L2 -21 3251 3217 269 357 31 0 chrX 109705027 109705125 -52894805 + MIR SINE MIR 45 145 -63 189 121 0 0 chrX 109705755 109705788 -52894142 + (TG)n Simple_repeat Simple_repeat 2 34 0 2444 71 0 0 chrX 109706220 109706515 -52893415 - AluY SINE Alu -16 295 1 3362 145 28 7 chrX 109706866 109707403 -52892527 + L1MB5 LINE L1 5627 6174 0 319 261 37 31 chrX 109707427 109707588 -52892342 - L1ME4a LINE L1 -6 6115 5954 207 0 0 0 chrX 109710601 109710624 -52889306 + (TG)n Simple_repeat Simple_repeat 2 24 0 572 234 169 6 chrX 109710628 109710804 -52889126 + MIR3 SINE MIR 8 205 -3 778 168 0 0 chrX 109712497 109712643 -52887287 - FLAM_A SINE Alu 0 146 1 241 108 0 0 chrX 109715727 109715764 -52884166 - L1MB8 LINE L1 -7 6171 6135 185 250 0 0 chrX 109715924 109715964 -52883966 - MIR3 SINE MIR -19 189 150 565 267 115 6 chrX 109721640 109721805 -52878125 + MIR3 SINE MIR 7 189 -19 189 214 24 12 chrX 109722289 109722373 -52877557 + CT-rich Low_complexity Low_complexity 3 87 0 22 0 0 0 chrX 109723033 109723055 -52876875 + AT_rich Low_complexity Low_complexity 1 22 0 279 130 0 0 chrX 109724072 109724126 -52875804 + (A)n Simple_repeat Simple_repeat 1 54 0 241 264 0 0 chrX 109724269 109724322 -52875608 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2238 121 52 27 chrX 109728148 109728400 -52871530 + L1MA5 LINE L1 5768 6035 -265 2048 105 139 0 chrX 109728400 109728695 -52871235 + MER1B DNA MER1_type 2 337 0 2238 121 52 27 chrX 109728695 109728848 -52871082 + L1MA5 LINE L1 6035 6183 -117 934 136 32 0 chrX 109728951 109729106 -52870824 + L1MA5A LINE L1 6134 6293 -4 2285 99 0 10 chrX 109729994 109730298 -52869632 + AluSx SINE Alu 1 301 -11 7131 191 25 28 chrX 109732121 109732667 -52867263 - L1MB5 LINE L1 -17 6393 5847 186 43 0 0 chrX 109732667 109732690 -52867240 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2309 89 3 0 chrX 109732690 109732972 -52866958 - AluSq SINE Alu -30 283 1 7131 191 25 28 chrX 109732972 109733271 -52866659 - L1MB5 LINE L1 -562 5848 5550 2215 96 0 17 chrX 109733271 109733572 -52866358 - AluSc SINE Alu -13 296 1 7131 191 25 28 chrX 109733572 109735101 -52864829 - L1MB5 LINE L1 -860 5550 4012 4289 210 36 12 chrX 109735088 109736374 -52863556 - L1MB5 LINE L1 -2921 3461 2140 * 2325 150 3 16 chrX 109736398 109736772 -52863158 - L1MC1 LINE L1 -1 6332 5964 527 274 239 0 chrX 109736793 109736994 -52862936 - MIR SINE MIR -1 261 13 225 211 0 0 chrX 109737014 109737066 -52862864 + (TGG)n Simple_repeat Simple_repeat 1 52 0 654 235 27 8 chrX 109737081 109737254 -52862676 - MIR SINE MIR -34 228 53 835 157 54 6 chrX 109738476 109738642 -52861288 - MER104 DNA MER2_type -3 177 4 342 202 67 11 chrX 109739485 109739574 -52860356 - MER5B DNA MER1_type -84 94 1 337 301 127 52 chrX 109740793 109741155 -52858775 - L2 LINE L2 -20 3252 2864 296 159 0 16 chrX 109746362 109746425 -52853505 + GA-rich Low_complexity Low_complexity 3 64 0 269 304 61 95 chrX 109747792 109748088 -52851842 - L2 LINE L2 -21 3251 2966 320 216 22 141 chrX 109748549 109748680 -52851250 - MIR3 SINE MIR -89 119 2 872 284 59 0 chrX 109749776 109750012 -52849918 + MIR SINE MIR 3 252 -10 306 317 166 52 chrX 109750317 109750702 -52849228 - L2 LINE L2 0 3272 2844 671 326 45 40 chrX 109750747 109750801 -52849129 - L2 LINE L2 -503 2811 2759 1215 227 20 73 chrX 109750801 109751158 -52848772 - MER102b DNA MER1_type -3 338 1 671 326 45 40 chrX 109751158 109751609 -52848321 - L2 LINE L2 -555 2759 2303 596 303 52 28 chrX 109751640 109751891 -52848039 + MIR SINE MIR 5 261 -1 223 315 11 0 chrX 109751888 109751977 -52847953 - L2 LINE L2 -1029 2285 2196 * 211 359 17 8 chrX 109752136 109752253 -52847677 - MIR3 SINE MIR -6 202 85 285 336 45 0 chrX 109752358 109752468 -52847462 + L2 LINE L2 3121 3235 -37 199 320 67 0 chrX 109752945 109753020 -52846910 + L2 LINE L2 3143 3222 -50 310 250 201 56 chrX 109753024 109753274 -52846656 + L1MC/D LINE L1 5517 5801 -334 394 286 71 28 chrX 109753376 109753558 -52846372 + MIR SINE MIR 3 192 -70 509 325 31 49 chrX 109754629 109754915 -52845015 - L2 LINE L2 -420 2894 2614 191 341 151 20 chrX 109754991 109755349 -52844581 - L2 LINE L2 -923 2391 1987 331 263 37 68 chrX 109755352 109755542 -52844388 + MER3 DNA MER1_type 26 209 0 * 1129 185 0 0 chrX 109755542 109755580 -52844350 - MER3 DNA MER1_type -162 47 10 219 309 12 48 chrX 109755621 109755705 -52844225 - L2 LINE L2 -1387 1927 1847 5053 243 72 22 chrX 109755782 109757219 -52842711 + L2 LINE L2 279 1806 -1508 1516 180 59 3 chrX 109757219 109757524 -52842406 + MER33 DNA MER1_type 3 324 0 5053 243 72 22 chrX 109757524 109757685 -52842245 + L2 LINE L2 1805 1957 -1357 502 317 73 33 chrX 109757697 109758000 -52841930 - L2 LINE L2 -656 2658 2344 332 227 34 85 chrX 109758642 109758662 -52841268 - MER5A DNA MER1_type -22 167 148 803 157 5 130 chrX 109758662 109758878 -52841052 - MER5A DNA MER1_type 0 189 1 332 227 34 85 chrX 109758878 109759033 -52840897 - MER5A DNA MER1_type -41 148 1 286 57 0 0 chrX 109759760 109759795 -52840135 + Alu SINE Alu 4 38 -261 1395 157 5 0 chrX 109759795 109760033 -52839897 + AluSg/x SINE Alu 69 307 0 1924 204 78 4 chrX 109760157 109760608 -52839322 - Charlie4a DNA MER1_type -24 484 1 413 322 108 58 chrX 109760754 109761291 -52838639 + L2 LINE L2 219 782 -2532 894 216 9 35 chrX 109761717 109761949 -52837981 - MIR SINE MIR 0 262 37 917 185 22 81 chrX 109762526 109762578 -52837352 - MER3 DNA MER1_type 0 209 156 2053 142 0 0 chrX 109762578 109762860 -52837070 + AluSx SINE Alu 1 282 -30 300 53 0 0 chrX 109762860 109762898 -52837032 + (CAAT)n Simple_repeat Simple_repeat 3 40 0 917 185 22 81 chrX 109762898 109763066 -52836864 - MER3 DNA MER1_type -51 158 1 246 212 45 15 chrX 109763270 109763336 -52836594 + GA-rich Low_complexity Low_complexity 5 72 0 579 312 87 29 chrX 109763424 109763824 -52836106 + L2 LINE L2 1940 2374 -940 2173 147 25 11 chrX 109763824 109764184 -52835746 + MLT1A1 LTR MaLR 1 365 0 579 312 87 29 chrX 109764184 109764264 -52835666 + L2 LINE L2 2374 2448 -866 997 195 0 0 chrX 109764696 109764865 -52835065 + FRAM SINE Alu 1 169 -7 413 319 75 59 chrX 109764896 109765419 -52834511 - L2 LINE L2 -461 2853 2323 262 281 55 16 chrX 109765482 109765610 -52834320 - L2 LINE L2 -1227 2087 1955 875 222 14 32 chrX 109765761 109765982 -52833948 - MIR SINE MIR -21 241 25 1952 161 0 0 chrX 109766045 109766349 -52833581 + AluSx SINE Alu 1 304 -8 701 256 0 12 chrX 109766358 109766530 -52833400 - Charlie4 DNA MER1_type -1 1960 1791 650 270 0 0 chrX 109766535 109766694 -52833236 - Charlie4 DNA MER1_type -1698 263 105 1585 149 94 46 chrX 109766697 109766880 -52833050 - MER2 DNA MER2_type -1 344 137 1089 83 214 21 chrX 109766880 109767072 -52832858 + MER30 DNA MER1_type 1 229 -1 1585 149 94 46 chrX 109767072 109767216 -52832714 - MER2 DNA MER2_type -208 137 1 302 240 13 13 chrX 109767216 109767281 -52832649 - Charlie4 DNA MER1_type -1858 103 39 180 0 0 0 chrX 109767439 109767459 -52832471 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 428 363 67 13 chrX 109767582 109768085 -52831845 - L2 LINE L2 -217 3055 2511 181 308 0 0 chrX 109768094 109768146 -52831784 + L2 LINE L2 2671 2722 -592 1545 260 55 86 chrX 109768150 109768411 -52831519 + L1MC4a LINE L1 4900 5167 -1359 2540 75 0 0 chrX 109768411 109768718 -52831212 + AluSc SINE Alu 1 307 -2 1545 260 55 86 chrX 109768718 109768959 -52830971 + L1MC4a LINE L1 5167 5414 -1112 2190 95 0 7 chrX 109768959 109769266 -52830664 - AluSx SINE Alu 0 305 1 1545 260 55 86 chrX 109769266 109769662 -52830268 + L1MC4a LINE L1 5414 5783 -743 516 256 23 0 chrX 109769734 109769867 -52830063 + MIR SINE MIR 99 234 -28 385 269 116 51 chrX 109769912 109770284 -52829646 + L1MC4a LINE L1 5782 6177 -1631 233 398 0 45 chrX 109770461 109770637 -52829293 + L2 LINE L2 2924 3091 -181 656 337 122 23 chrX 109770868 109771426 -52828504 - L2 LINE L2 -842 2472 1860 233 286 0 67 chrX 109771633 109771752 -52828178 - MER113 DNA MER1_type? -371 150 40 1930 153 3 52 chrX 109771939 109772266 -52827664 + AluJb SINE Alu 1 311 -1 503 162 0 54 chrX 109773363 109773474 -52826456 + L1MA7 LINE L1 6187 6291 0 340 255 71 28 chrX 109776213 109776354 -52823576 - MER103 DNA DNA -7 159 13 327 104 0 0 chrX 109776912 109776960 -52822970 + (CA)n Simple_repeat Simple_repeat 2 49 0 316 218 26 0 chrX 109777533 109777611 -52822319 - MIR SINE MIR -98 164 85 385 286 34 27 chrX 109777922 109778069 -52821861 + MIR SINE MIR 2 149 -113 24 0 0 0 chrX 109778090 109778114 -52821816 + AT_rich Low_complexity Low_complexity 1 24 0 642 297 41 9 chrX 109778128 109778347 -52821583 - MIR SINE MIR -22 240 15 217 325 9 18 chrX 109778846 109778960 -52820970 + GA-rich Low_complexity Low_complexity 1 113 0 513 245 39 54 chrX 109778997 109779063 -52820867 - MIR SINE MIR -2 260 195 2313 105 36 30 chrX 109779063 109779425 -52820505 + THE1B LTR MaLR 1 364 0 513 245 39 54 chrX 109779425 109779562 -52820368 - MIR SINE MIR -67 195 60 1000 217 0 0 chrX 109779595 109779770 -52820160 - FAM SINE Alu 0 175 1 208 284 78 17 chrX 109780194 109780310 -52819620 + L2 LINE L2 18 140 -3174 4271 223 58 115 chrX 109780310 109782359 -52817571 + L2 LINE L2 325 2257 -1057 734 286 75 0 chrX 109782354 109782567 -52817363 + MIR SINE MIR 33 261 -1 * 186 290 74 85 chrX 109782933 109783109 -52816821 - L2 LINE L2 -15 3257 3084 292 299 0 0 chrX 109784480 109784567 -52815363 + L1ME LINE L1 5736 5822 -299 1069 228 137 52 chrX 109784578 109785082 -52814848 + L1MC4 LINE L1 7496 8042 0 22 35 0 0 chrX 109785088 109785117 -52814813 + AT_rich Low_complexity Low_complexity 1 29 0 750 221 10 53 chrX 109785177 109785385 -52814545 + L1ME4a LINE L1 5553 5751 -370 275 228 38 13 chrX 109785759 109785838 -52814092 + L1ME4a LINE L1 5965 6045 -76 2050 129 3 35 chrX 109786179 109786497 -52813433 - AluSx SINE Alu -4 308 1 2244 149 2 40 chrX 109787136 109787318 -52812612 + MLT1B LTR MaLR 3 190 -200 2242 122 0 0 chrX 109787318 109787621 -52812309 + AluSx SINE Alu 5 307 -5 2244 149 2 40 chrX 109787621 109787841 -52812089 + MLT1B LTR MaLR 190 390 0 480 213 74 8 chrX 109787854 109787976 -52811954 - MIR SINE MIR -27 235 106 496 294 35 13 chrX 109787977 109788205 -52811725 + L1ME3A LINE L1 5713 5945 -225 227 271 0 0 chrX 109788225 109788295 -52811635 + (TA)n Simple_repeat Simple_repeat 2 71 0 387 271 54 23 chrX 109788589 109788718 -52811212 - MIR SINE MIR -119 143 11 210 188 0 72 chrX 109789806 109789875 -52810055 + CT-rich Low_complexity Low_complexity 1 64 0 191 161 0 0 chrX 109790028 109790059 -52809871 + MER5A DNA MER1_type 113 143 -46 485 229 263 0 chrX 109790299 109790478 -52809452 - MIR SINE MIR -34 228 3 251 204 301 0 chrX 109790689 109790782 -52809148 - L2 LINE L2 0 3313 3193 586 254 117 31 chrX 109791091 109792369 -52807561 + L1MEd LINE L1 1 1257 -4862 259 217 67 0 chrX 109792886 109792946 -52806984 + L1M4 LINE L1 4015 4078 -2068 11320 65 2 0 chrX 109792957 109795168 -52804762 - L1PA6 LINE L1 -4 6150 3935 3450 193 9 1 chrX 109795268 109795724 -52804206 - L1 LINE L1 -3348 2798 2334 7032 67 0 6 chrX 109795724 109797340 -52802590 + L1PA7 LINE L1 4543 6154 0 3450 193 9 1 chrX 109797340 109797567 -52802363 - L1 LINE L1 -3812 2334 2110 24 32 0 0 chrX 109798690 109798721 -52801209 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chrX 109798724 109798762 -52801168 + (TA)n Simple_repeat Simple_repeat 1 39 0 4597 110 1 0 chrX 109999696 110000361 -52599569 - L1P LINE L1 -5479 667 2 1062 209 29 5 chrX 110000520 110000730 -52599200 + MER58A DNA MER1_type 2 216 -8 1910 263 79 31 chrX 110000798 110001330 -52598600 + L1ME LINE L1 614 1119 -5421 1910 191 3 21 chrX 110001330 110001702 -52598228 + MLT1A1 LTR MaLR 1 365 0 1910 263 79 31 chrX 110001702 110002217 -52597713 + L1ME LINE L1 1119 1718 -4822 364 234 75 27 chrX 110002224 110002412 -52597518 + L1ME LINE L1 2012 2208 -4332 8249 133 30 11 chrX 110002456 110003866 -52596064 - Tigger1 DNA MER2_type -61 2357 922 4482 155 18 19 chrX 110003882 110004973 -52594957 - L1PB4 LINE L1 -14 6142 5057 5783 131 13 4 chrX 110004986 110005909 -52594021 - Tigger1 DNA MER2_type -1487 931 1 662 224 81 39 chrX 110005937 110006272 -52593658 + L1ME LINE L1 2233 2581 -3959 * 4820 141 27 24 chrX 110006271 110008046 -52591884 + L1MA7 LINE L1 4428 6279 -12 1325 203 57 21 chrX 110008046 110008196 -52591734 + L1ME LINE L1 2570 2713 -3827 11186 123 24 20 chrX 110008196 110010822 -52589108 + L1PA10 LINE L1 3561 6168 0 1325 203 57 21 chrX 110010822 110011095 -52588835 + L1ME LINE L1 2713 3008 -3532 34736 96 8 8 chrX 110011103 110017247 -52582683 + L1PA6 LINE L1 11 6153 -1 359 194 42 163 chrX 110017241 110017596 -52582334 + L1ME LINE L1 2968 3279 -3261 * 249 247 183 0 chrX 110017651 110017744 -52582186 - MIR SINE MIR -140 122 13 535 148 10 0 chrX 110017961 110018062 -52581868 - L1MB7 LINE L1 0 6184 6083 728 179 26 6 chrX 110020089 110020245 -52579685 + MER97a DNA MER1_type? 19 177 -717 744 285 24 68 chrX 110020590 110020885 -52579045 + L2 LINE L2 2990 3271 -1 267 283 61 89 chrX 110020889 110021069 -52578861 - L3 LINE CR1 -574 1003 829 1593 171 72 10 chrX 110021364 110021656 -52578274 - AluJo SINE Alu -2 310 1 524 259 67 0 chrX 110021672 110021807 -52578123 - MIR SINE MIR -12 250 107 537 30 0 0 chrX 110023250 110023317 -52576613 + (TA)n Simple_repeat Simple_repeat 1 67 0 1107 155 5 50 chrX 110023317 110023517 -52576413 - AluJo SINE Alu -30 282 92 25 51 0 0 chrX 110023547 110023586 -52576344 + AT_rich Low_complexity Low_complexity 1 39 0 191 304 22 0 chrX 110023956 110024002 -52575928 - L2 LINE L2 -5 3267 3221 389 284 64 21 chrX 110024098 110024239 -52575691 + MIR SINE MIR 116 262 0 248 312 95 56 chrX 110024251 110024482 -52575448 - L2 LINE L2 -182 3090 2851 259 353 127 17 chrX 110024498 110024671 -52575259 - L2 LINE L2 -211 3061 2870 919 253 70 70 chrX 110025277 110025569 -52574361 - MER34 LTR ERV1 0 542 251 2463 135 48 7 chrX 110025569 110025984 -52573946 - MSTB1 LTR MaLR 0 432 1 919 253 70 70 chrX 110025984 110026068 -52573862 - MER34 LTR ERV1 -291 251 168 2264 131 98 18 chrX 110026068 110026464 -52573466 - MSTA LTR MaLR 0 428 1 919 253 70 70 chrX 110026464 110026628 -52573302 - MER34 LTR ERV1 -373 169 1 823 283 74 37 chrX 110027068 110027471 -52572459 + L2 LINE L2 1616 2033 -1281 605 282 141 36 chrX 110027725 110027945 -52571985 - MIR SINE MIR -19 243 1 22 35 0 0 chrX 110028062 110028091 -52571839 + AT_rich Low_complexity Low_complexity 1 29 0 432 0 0 0 chrX 110028655 110028703 -52571227 + (CA)n Simple_repeat Simple_repeat 1 48 0 342 107 0 0 chrX 110029857 110029913 -52570017 + (TG)n Simple_repeat Simple_repeat 1 56 0 290 153 17 0 chrX 110029913 110029972 -52569958 + GA-rich Low_complexity Low_complexity 2 61 0 327 362 137 29 chrX 110031940 110032429 -52567501 + L2 LINE L2 2286 2827 -487 583 319 11 5 chrX 110034673 110034861 -52565069 + MER5A DNA MER1_type 1 189 0 778 197 6 66 chrX 110035247 110035430 -52564500 + MER5B DNA MER1_type 6 177 -1 2145 136 41 103 chrX 110037794 110038281 -52561649 + LTR32 LTR ERVL 15 471 0 881 267 76 25 chrX 110038629 110038944 -52560986 + L2 LINE L2 2981 3311 -2 1340 245 30 39 chrX 110039276 110039455 -52560475 - L1ME4a LINE L1 -4 6117 5938 1941 141 7 20 chrX 110039455 110039760 -52560170 - AluJb SINE Alu -11 301 1 1340 245 30 39 chrX 110039760 110040074 -52559856 - L1ME4a LINE L1 -183 5938 5628 1708 142 23 42 chrX 110040084 110040394 -52559536 - AluJb SINE Alu -8 304 1 1338 105 202 43 chrX 110040843 110041101 -52558829 + AluSc SINE Alu 1 299 0 603 207 179 6 chrX 110041280 110041435 -52558495 - MER5A DNA MER1_type 0 189 4 811 209 35 0 chrX 110041462 110041634 -52558296 + MER5B DNA MER1_type 1 178 0 635 272 56 11 chrX 110041829 110042009 -52557921 - MIR3 SINE MIR -1 207 20 334 322 59 17 chrX 110042113 110042231 -52557699 + MIR SINE MIR 19 141 -67 436 306 57 0 chrX 110042238 110042395 -52557535 - MIR3 SINE MIR -1 207 42 450 36 0 0 chrX 110043255 110043311 -52556619 + (TA)n Simple_repeat Simple_repeat 2 57 0 1550 180 28 21 chrX 110043311 110043594 -52556336 - AluJb SINE Alu -27 285 1 328 307 0 0 chrX 110043609 110043697 -52556233 - L1MC4 LINE L1 -1339 6703 6616 183 152 0 0 chrX 110043697 110043743 -52556187 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 984 109 0 2 chrX 110043744 110044252 -52555678 + (TA)n Simple_repeat Simple_repeat 1 506 0 2430 48 0 10 chrX 110044252 110044545 -52555385 - AluY SINE Alu -21 290 1 186 198 123 66 chrX 110044927 110045033 -52554897 + L2 LINE L2 1884 1995 -1319 1723 145 7 21 chrX 110045125 110045408 -52554522 + AluJb SINE Alu 1 279 -33 1576 157 39 52 chrX 110047540 110047845 -52552085 - AluJo SINE Alu -9 303 3 240 304 33 11 chrX 110047881 110047973 -52551957 + MER5A DNA MER1_type 95 188 -1 21 36 0 0 chrX 110048703 110048731 -52551199 + AT_rich Low_complexity Low_complexity 1 28 0 524 237 59 17 chrX 110049450 110049568 -52550362 + L2 LINE L2 3190 3312 -1 244 333 13 0 chrX 110050585 110050660 -52549270 - MIR3 SINE MIR -48 160 85 186 246 0 0 chrX 110050694 110050755 -52549175 + GA-rich Low_complexity Low_complexity 3 63 0 834 237 6 0 chrX 110050876 110051045 -52548885 - MER5B DNA MER1_type -8 170 1 964 88 14 27 chrX 110051534 110051682 -52548248 + L1MD1 LINE L1 6097 6242 0 621 27 0 0 chrX 110052012 110052087 -52547843 + (CA)n Simple_repeat Simple_repeat 1 75 0 259 174 0 0 chrX 110052569 110052615 -52547315 - L2 LINE L2 -3 3310 3265 626 226 108 46 chrX 110053678 110054100 -52545830 - L1MC4a LINE L1 -11 6110 5668 1831 161 0 0 chrX 110055730 110056009 -52543921 + AluJb SINE Alu 2 280 -32 223 100 50 0 chrX 110056284 110056324 -52543606 + L2 LINE L2 2716 2757 -557 417 360 30 6 chrX 110056593 110056757 -52543173 - MIR3 SINE MIR -7 201 34 416 246 66 16 chrX 110056748 110056870 -52543060 + L2 LINE L2 3180 3307 -6 * 847 215 81 27 chrX 110056877 110057138 -52542792 + L2 LINE L2 3039 3313 0 976 215 11 5 chrX 110057263 110057449 -52542481 + MER5A DNA MER1_type 1 187 -2 224 264 38 0 chrX 110057457 110057510 -52542420 + L2 LINE L2 3210 3264 -8 210 167 71 0 chrX 110058156 110058198 -52541732 + GA-rich Low_complexity Low_complexity 4 48 0 1798 76 0 0 chrX 110058247 110058470 -52541460 + L1MA1 LINE L1 6073 6295 -7 21 89 0 0 chrX 110058477 110058533 -52541397 + AT_rich Low_complexity Low_complexity 1 56 0 229 167 0 0 chrX 110059472 110059520 -52540410 + LTR66 LTR ERVL 392 439 -171 285 182 0 0 chrX 110059520 110059575 -52540355 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 350 140 18 0 chrX 110059581 110059638 -52540292 + L1P LINE L1 4835 4892 -1254 212 132 11 77 chrX 110059652 110059743 -52540187 + (TA)n Simple_repeat Simple_repeat 2 86 0 1250 142 46 5 chrX 110059764 110059961 -52539969 + MER46A DNA MER2_type 32 236 0 222 149 43 21 chrX 110059961 110060055 -52539875 + (TA)n Simple_repeat Simple_repeat 1 96 0 5679 70 6 1 chrX 110061468 110062671 -52537259 + L1PA7 LINE L1 4620 5826 -328 1276 209 52 4 chrX 110063182 110063431 -52536499 + MIR SINE MIR 2 262 0 267 31 0 0 chrX 110063571 110063603 -52536327 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2008 127 25 0 chrX 110063922 110064206 -52535724 + AluSx SINE Alu 3 293 -19 1734 163 66 30 chrX 110065102 110065434 -52534496 + MER2 DNA MER2_type 1 344 0 765 114 32 16 chrX 110065499 110065622 -52534308 - L1MB1 LINE L1 -1 6167 6043 378 150 0 0 chrX 110065622 110065682 -52534248 + L1MB1 LINE L1 5993 6052 -116 1772 142 30 0 chrX 110066797 110067065 -52532865 + AluJo SINE Alu 14 289 -23 503 279 62 8 chrX 110067448 110067577 -52532353 + L2 LINE L2 3136 3271 -1 1013 224 47 9 chrX 110067778 110068010 -52531920 + MIR SINE MIR 1 241 -21 995 144 12 2 chrX 110068257 110068466 -52531464 - L1PA14 LINE L1 -14 6140 5900 1659 94 0 0 chrX 110068474 110068697 -52531233 + L1PA14 LINE L1 5677 5899 -262 373 366 43 4 chrX 110069188 110069423 -52530507 + L3b LINE CR1 1104 1347 -236 514 331 39 16 chrX 110069598 110069852 -52530078 - MIR SINE MIR -1 261 2 189 332 58 113 chrX 110070551 110070879 -52529051 - L2 LINE L2 -18 3254 2945 246 308 22 22 chrX 110070935 110071026 -52528904 - L2 LINE L2 -236 3036 2946 766 232 10 41 chrX 110071305 110071499 -52528431 + MER5A DNA MER1_type 2 189 0 1124 226 12 16 chrX 110071693 110071941 -52527989 + MIR SINE MIR 8 254 -8 276 83 0 0 chrX 110072070 110072106 -52527824 - MER5B DNA MER1_type 0 178 143 258 170 0 0 chrX 110072129 110072176 -52527754 + MER5B DNA MER1_type 130 176 -2 727 280 103 0 chrX 110072211 110072425 -52527505 - MIR SINE MIR -15 247 12 * 1160 297 76 30 chrX 110072407 110073068 -52526862 + L2 LINE L2 2564 3246 -67 443 263 158 13 chrX 110073060 110073212 -52526718 + MER91B DNA MER1_type 7 180 -10 * 240 267 50 0 chrX 110073250 110073310 -52526620 + L2 LINE L2 3247 3309 -4 336 364 62 11 chrX 110074798 110074974 -52524956 - L3b LINE CR1 -88 1495 1311 408 40 0 0 chrX 110075908 110075958 -52523972 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 439 248 26 17 chrX 110075975 110076092 -52523838 - L2 LINE L2 -19 3294 3177 2020 116 7 0 chrX 110076202 110076494 -52523436 - AluSx SINE Alu -18 294 1 207 306 35 62 chrX 110076529 110076673 -52523257 + L2 LINE L2 2914 3053 -219 359 306 19 31 chrX 110076800 110076960 -52522970 - MIR SINE MIR -56 206 49 2403 56 0 3 chrX 110077166 110077486 -52522444 + AluY SINE Alu 1 319 0 186 143 0 0 chrX 110077528 110077563 -52522367 + (TAA)n Simple_repeat Simple_repeat 1 35 0 735 286 42 8 chrX 110077567 110077808 -52522122 - MIR SINE MIR -3 259 11 221 325 25 25 chrX 110078790 110078870 -52521060 - MIR SINE MIR -106 102 23 250 309 32 32 chrX 110078895 110078989 -52520941 + MIR SINE MIR 37 130 -78 2155 194 3 8 chrX 110080398 110080765 -52519165 + MLT1A1 LTR MaLR 1 365 0 245 281 22 11 chrX 110081335 110081424 -52518506 + L3b LINE CR1 1322 1411 -172 2054 232 116 27 chrX 110081693 110082444 -52517486 + L1MC4a LINE L1 5258 6075 -1733 192 77 0 0 chrX 110082500 110082526 -52517404 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 2051 108 37 7 chrX 110083051 110083348 -52516582 + AluSq SINE Alu 1 306 -7 191 250 25 0 chrX 110083877 110083917 -52516013 + MER5A DNA MER1_type 50 90 -99 731 228 41 15 chrX 110083951 110084148 -52515782 + MIR SINE MIR 49 250 -12 888 171 0 0 chrX 110084773 110084925 -52515005 - FRAM SINE Alu -5 171 20 3500 163 60 42 chrX 110085466 110086197 -52513733 + L1MB7 LINE L1 5432 6175 -9 2214 87 0 69 chrX 110087823 110088155 -52511775 + AluSq SINE Alu 1 309 -4 310 260 167 0 chrX 110088737 110088833 -52511097 - MIR SINE MIR -59 149 38 297 238 159 24 chrX 110089424 110089550 -52510380 - MER103 DNA DNA 0 166 24 193 348 11 11 chrX 110089944 110090036 -52509894 - L2 LINE L2 -536 2778 2687 307 294 20 62 chrX 110090997 110091143 -52508787 - MIR SINE MIR -6 256 117 512 188 0 10 chrX 110091622 110091718 -52508212 + MER5A DNA MER1_type 9 103 -86 1125 140 38 5 chrX 110092058 110092244 -52507686 + MER20 DNA MER1_type 1 192 -27 2262 72 7 0 chrX 110092675 110092952 -52506978 + AluY SINE Alu 18 296 -15 1090 263 92 22 chrX 110093487 110093887 -52506043 + MLT1J2 LTR MaLR 20 447 -3 1213 248 84 21 chrX 110094438 110094817 -52505113 + MLT1I LTR MaLR 1 403 -6 914 225 28 0 chrX 110095032 110095210 -52504720 + MER58A DNA MER1_type 27 209 -15 334 352 45 11 chrX 110096898 110097074 -52502856 + MIR3 SINE MIR 25 206 -2 1139 205 5 9 chrX 110097186 110097396 -52502534 - MER3 DNA MER1_type 0 209 1 212 189 19 19 chrX 110097900 110097953 -52501977 + (CAAAG)n Simple_repeat Simple_repeat 1 53 0 547 234 8 0 chrX 110099019 110099143 -52500787 - MIR SINE MIR 0 262 138 341 43 21 0 chrX 110099159 110099206 -52500724 + (CA)n Simple_repeat Simple_repeat 1 48 0 293 269 110 99 chrX 110099633 110100016 -52499914 + L2 LINE L2 2882 3268 -4 450 249 76 28 chrX 110100117 110100295 -52499635 - MER20B DNA MER1_type 0 219 31 289 285 44 69 chrX 110101052 110101250 -52498680 - MIR SINE MIR -42 220 22 243 0 0 0 chrX 110101607 110101634 -52498296 + (CA)n Simple_repeat Simple_repeat 2 28 0 309 207 138 35 chrX 110101821 110101937 -52497993 - L1ME3A LINE L1 -16 6154 6027 260 204 10 51 chrX 110102039 110102137 -52497793 - L1ME3A LINE L1 -202 5962 5869 475 273 110 35 chrX 110102197 110102424 -52497506 - L3b LINE CR1 -195 1388 1145 1786 117 110 0 chrX 110102873 110103182 -52496748 + L1MB3 LINE L1 5832 6174 -9 227 221 0 13 chrX 110103204 110103281 -52496649 + GA-rich Low_complexity Low_complexity 2 77 0 26 30 0 0 chrX 110103325 110103358 -52496572 + AT_rich Low_complexity Low_complexity 1 33 0 507 318 41 12 chrX 110105247 110105417 -52494513 + MER5A DNA MER1_type 14 188 -1 247 289 24 0 chrX 110105606 110105689 -52494241 - MER103 DNA DNA -6 160 76 3656 139 8 2 chrX 110105690 110106308 -52493622 + L1MA5 LINE L1 5361 5982 -318 1839 109 8 16 chrX 110106308 110106564 -52493366 - AluSc SINE Alu -54 255 2 2961 146 35 23 chrX 110107196 110107771 -52492159 + L1MB5 LINE L1 5585 6166 -8 32 26 0 0 chrX 110109146 110109185 -52490745 + AT_rich Low_complexity Low_complexity 1 39 0 611 351 56 15 chrX 110110037 110110305 -52489625 - L3b LINE CR1 -26 1557 1279 197 0 0 67 chrX 110110882 110110912 -52489018 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 519 299 52 75 chrX 110110935 110111456 -52488474 + L1MEd LINE L1 685 1193 -4926 383 303 7 0 chrX 110111652 110111794 -52488136 + HAL1 LINE L1 1524 1666 -841 285 125 0 0 chrX 110112293 110112349 -52487581 + (A)n Simple_repeat Simple_repeat 1 56 0 230 296 0 0 chrX 110115189 110115243 -52484687 + (ATG)n Simple_repeat Simple_repeat 3 56 0 609 263 45 53 chrX 110115244 110115491 -52484439 - MIR SINE MIR 0 262 18 794 158 51 6 chrX 110115740 110115898 -52484032 + MER20 DNA MER1_type 7 171 -48 1807 183 0 0 chrX 110116474 110116774 -52483156 - AluJb SINE Alu -12 300 1 450 262 188 20 chrX 110117150 110117299 -52482631 - MIR SINE MIR -51 211 38 2277 125 19 8 chrX 110117328 110117696 -52482234 - L1PB1 LINE L1 -3 6148 5777 272 176 15 0 chrX 110117699 110117767 -52482163 + (TA)n Simple_repeat Simple_repeat 1 69 0 222 91 0 0 chrX 110117780 110117813 -52482117 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 2751 104 68 60 chrX 110117816 110118524 -52481406 - L1PB1 LINE L1 -376 5775 5068 4333 60 33 48 chrX 110118524 110119579 -52480351 + MER11A LTR ERVK 1 1266 0 1346 197 20 0 chrX 110119579 110119878 -52480052 - L1PB1 LINE L1 -1073 5073 4769 9825 202 13 2 chrX 110119879 110121796 -52478134 + L1 LINE L1 2472 4418 -1728 486 0 0 0 chrX 110121796 110121850 -52478080 + (TAAAA)n Simple_repeat Simple_repeat 4 57 0 9825 202 13 2 chrX 110121850 110122204 -52477726 + L1 LINE L1 4418 4767 -1379 318 222 130 46 chrX 110122417 110122525 -52477405 - L2 LINE L2 0 3313 3197 1798 222 31 90 chrX 110122547 110123136 -52476794 + MLT2B3 LTR ERVL 1 554 0 295 171 23 33 chrX 110123664 110123730 -52476200 + L1MC/D LINE L1 5311 5372 -749 2114 153 42 14 chrX 110123730 110124083 -52475847 - THE1B LTR MaLR -1 363 1 295 171 23 33 chrX 110124083 110124151 -52475779 + L1MC/D LINE L1 5372 5439 -682 349 269 157 35 chrX 110124264 110124436 -52475494 + MIR SINE MIR 28 218 -44 5782 213 91 35 chrX 110124511 110125062 -52474868 + L1M4 LINE L1 2879 3398 -2748 2283 108 7 0 chrX 110125062 110125358 -52474572 + AluSx SINE Alu 1 298 -14 5782 213 91 35 chrX 110125358 110126554 -52473376 + L1M4 LINE L1 3398 4769 -1377 2155 132 0 0 chrX 110126554 110126850 -52473080 + AluSx SINE Alu 1 296 -16 5782 213 91 35 chrX 110126850 110127229 -52472701 + L1M4 LINE L1 4769 5125 -1021 386 119 0 0 chrX 110127229 110127296 -52472634 - L1MA3 LINE L1 -208 6097 6031 2897 231 26 16 chrX 110127297 110127644 -52472286 - L1MCa LINE L1 -3018 3408 3066 2448 53 13 0 chrX 110127644 110127943 -52471987 + AluY SINE Alu 1 303 -8 2897 231 26 16 chrX 110127943 110128481 -52471449 - L1MCa LINE L1 -3360 3066 2514 440 198 20 0 chrX 110128473 110128574 -52471356 - L1MA9 LINE L1 -302 5887 5785 * 799 232 21 50 chrX 110128571 110128851 -52471079 + L1MA9 LINE L1 5865 6136 -176 331 229 55 18 chrX 110129665 110129774 -52470156 + L1MA9 LINE L1 6162 6274 -38 1557 214 76 73 chrX 110129801 110130795 -52469135 - L1MCa LINE L1 -3900 2528 1531 6834 171 19 21 chrX 110130862 110132122 -52467808 - L1MC1 LINE L1 -3 6330 5072 5557 127 11 2 chrX 110132122 110133461 -52466469 + L1PA15 LINE L1 4806 6158 -7 6834 171 19 21 chrX 110133461 110134393 -52465537 - L1MC1 LINE L1 -1261 5072 4140 300 282 18 9 chrX 110134397 110134507 -52465423 - L1MCa LINE L1 -6312 114 4 782 299 45 8 chrX 110134530 110134932 -52464998 - L1ME4a LINE L1 -188 5933 5517 24 0 0 0 chrX 110135267 110135291 -52464639 + AT_rich Low_complexity Low_complexity 1 24 0 859 301 0 8 chrX 110136359 110136595 -52463335 - MIR SINE MIR 0 262 29 1126 125 5 3 chrX 110137329 110137530 -52462400 - AluSq SINE Alu -16 297 29 1251 246 44 29 chrX 110141596 110142052 -52457878 + L1MD2 LINE L1 4768 5230 -916 2847 204 44 26 chrX 110142056 110142788 -52457142 + L1MD2 LINE L1 5357 6101 -258 704 126 7 7 chrX 110142892 110143027 -52456903 + L1MB3 LINE L1 6039 6173 -10 26 30 0 0 chrX 110143171 110143204 -52456726 + AT_rich Low_complexity Low_complexity 1 33 0 522 224 63 21 chrX 110144188 110144331 -52455599 + MIR SINE MIR 97 245 -17 381 234 0 0 chrX 110144401 110144478 -52455452 - Tigger5 DNA MER2_type -2246 77 1 1043 185 26 13 chrX 110144729 110144961 -52454969 + L1MB7 LINE L1 5930 6164 -20 419 216 0 21 chrX 110145529 110145626 -52454304 - MER5A DNA MER1_type -86 103 9 274 303 21 62 chrX 110146107 110146252 -52453678 + MIR SINE MIR 118 256 -6 1220 82 2 0 chrX 110146886 110147862 -52452068 + L1P LINE L1 4 1109 -5037 248 295 107 97 chrX 110148384 110148767 -52451163 + L2 LINE L2 2882 3268 -4 436 272 71 28 chrX 110148869 110149050 -52450880 - MER20B DNA MER1_type 0 219 29 757 211 38 34 chrX 110149715 110149924 -52450006 + MIR SINE MIR 41 250 -12 895 171 0 0 chrX 110150549 110150701 -52449229 - FRAM SINE Alu -5 171 20 2807 188 62 24 chrX 110151242 110151938 -52447992 + L1MB7 LINE L1 5432 6153 -31 25 0 0 0 chrX 110154227 110154252 -52445678 + GC_rich Low_complexity Low_complexity 1 25 0 565 347 12 6 chrX 110155325 110155495 -52444435 - MIR3 SINE MIR -17 191 21 194 279 33 16 chrX 110155497 110155558 -52444372 - MIR SINE MIR -110 152 91 482 237 101 7 chrX 110156362 110156501 -52443429 - L2 LINE L2 -4 3309 3158 277 268 28 78 chrX 110156535 110156677 -52443253 + MLT1H LTR MaLR 41 175 -374 262 269 32 21 chrX 110156818 110156911 -52443019 + MLT1H LTR MaLR 433 526 -23 228 154 0 0 chrX 110156939 110156991 -52442939 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 376 206 76 46 chrX 110157084 110157215 -52442715 - L2 LINE L2 -417 2897 2763 11012 24 7 6 chrX 110157224 110159355 -52440575 - L1PA2 LINE L1 0 6155 4063 369 257 97 21 chrX 110159762 110159906 -52440024 + MIR3 SINE MIR 54 208 0 4598 246 75 45 chrX 110160206 110160335 -52439595 - L1M4 LINE L1 -1037 5109 4985 2074 173 3 16 chrX 110160335 110160705 -52439225 + MLT1A1 LTR MaLR 1 365 0 4598 246 75 45 chrX 110160705 110161047 -52438883 - L1M4 LINE L1 -1161 4985 4655 1898 93 4 0 chrX 110161047 110161306 -52438624 - L1PB2 LINE L1 -7 6144 5885 4598 246 75 45 chrX 110161306 110163105 -52436825 - L1M4 LINE L1 -1491 4655 2770 899 251 22 32 chrX 110163105 110163420 -52436510 - MLT1C LTR MaLR 0 467 156 7351 32 7 1 chrX 110163622 110164635 -52435295 + L1PA4 LINE L1 5135 6152 -3 223 244 0 0 chrX 110164653 110164694 -52435236 - MER5B DNA MER1_type -137 41 1 358 216 28 110 chrX 110165415 110165633 -52434297 - L1MC4 LINE L1 -17 8025 7826 3251 222 52 16 chrX 110165673 110166808 -52433122 - L1ME2 LINE L1 -10 6154 4956 1956 186 3 16 chrX 110166808 110167178 -52432752 + MLT1A1 LTR MaLR 1 365 0 3251 222 52 16 chrX 110167178 110167426 -52432504 - L1ME2 LINE L1 -1208 4956 4718 197 322 11 46 chrX 110168493 110168580 -52431350 + MER5A DNA MER1_type 1 84 -105 198 360 55 18 chrX 110168677 110168841 -52431089 + L2 LINE L2 2291 2460 -854 272 148 0 74 chrX 110169293 110169347 -52430583 - MIR SINE MIR -12 250 201 * 363 258 11 21 chrX 110169345 110169438 -52430492 - MIR SINE MIR -169 93 2 236 267 20 20 chrX 110170115 110170216 -52429714 + GA-rich Low_complexity Low_complexity 4 104 0 348 125 0 167 chrX 110170220 110170316 -52429614 + MSTD LTR MaLR 317 396 0 180 0 0 0 chrX 110170476 110170496 -52429434 + (CAG)n Simple_repeat Simple_repeat 3 22 0 351 0 0 0 chrX 110171031 110171070 -52428860 + (TA)n Simple_repeat Simple_repeat 2 40 0 4825 162 12 39 chrX 110171469 110172397 -52427533 + MER4D LTR ERV1 1 903 0 1548 281 58 19 chrX 110172849 110173382 -52426548 - MLT1G LTR MaLR -29 561 8 1965 86 0 8 chrX 110174099 110174355 -52425575 - AluSg SINE Alu -20 290 37 1706 167 0 0 chrX 110174971 110175259 -52424671 + L1PB4 LINE L1 5869 6156 0 235 253 89 27 chrX 110175332 110175478 -52424452 + L1ME4a LINE L1 5966 6120 -1 219 333 43 11 chrX 110176255 110176348 -52423582 - MIR3 SINE MIR -103 105 10 423 284 57 14 chrX 110176650 110176791 -52423139 + MIR3 SINE MIR 3 149 -59 606 297 43 26 chrX 110176822 110177054 -52422876 - MIR SINE MIR -2 260 25 365 304 111 15 chrX 110178692 110178962 -52420968 + L1ME4a LINE L1 4944 5239 -907 381 303 116 23 chrX 110179016 110179650 -52420280 + L1ME4a LINE L1 5337 6026 -95 24 0 0 0 chrX 110179715 110179739 -52420191 + AT_rich Low_complexity Low_complexity 1 24 0 342 342 85 10 chrX 110179742 110179941 -52419989 - L1ME4a LINE L1 -244 5877 5664 763 162 44 0 chrX 110180423 110180559 -52419371 - L1PB4 LINE L1 -4 6152 6011 182 36 0 36 chrX 110181531 110181559 -52418371 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 192 176 0 0 chrX 110183981 110184015 -52415915 - L2 LINE L2 -8 3305 3272 249 371 0 0 chrX 110184142 110184204 -52415726 - MIR SINE MIR -196 66 5 180 0 0 0 chrX 110185111 110185131 -52414799 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 1114 178 26 9 chrX 110185133 110185364 -52414566 - L1MB7 LINE L1 -20 6164 5930 391 234 0 0 chrX 110185615 110185692 -52414238 + Tigger5 DNA MER2_type 1 77 -2246 262 232 0 0 chrX 110185700 110185756 -52414174 + Tigger5 DNA MER2_type 2268 2323 0 516 236 62 25 chrX 110185762 110185923 -52414007 - MIR SINE MIR -17 245 79 555 265 65 43 chrX 110186069 110186112 -52413818 - MER5A DNA MER1_type 0 189 148 2291 85 7 0 chrX 110186112 110186405 -52413525 - AluSc SINE Alu -14 295 1 555 265 65 43 chrX 110186405 110186546 -52413384 - MER5A DNA MER1_type -41 148 1 968 167 0 0 chrX 110186984 110187146 -52412784 + MIR SINE MIR 38 199 -63 3292 135 72 78 chrX 110187167 110187719 -52412211 + LTR1 LTR ERV1 12 559 -226 2228 100 0 3 chrX 110187719 110188020 -52411910 + AluSx SINE Alu 13 312 0 3292 135 72 78 chrX 110188020 110188246 -52411684 + LTR1 LTR ERV1 559 785 0 722 202 11 44 chrX 110188252 110188435 -52411495 - AluJb SINE Alu -2 310 134 208 305 17 0 chrX 110188437 110188496 -52411434 + MIR SINE MIR 194 253 -9 687 248 30 60 chrX 110188617 110188851 -52411079 + MIR SINE MIR 30 256 -6 665 236 40 6 chrX 110189175 110189349 -52410581 - L1PB4 LINE L1 -1251 4895 4716 * 4699 149 20 33 chrX 110189348 110190621 -52409309 + L1PB4 LINE L1 4893 6154 -2 383 393 45 16 chrX 110190633 110190875 -52409055 + L2 LINE L2 3010 3258 -14 668 249 46 59 chrX 110191725 110191957 -52407973 + MIR SINE MIR 16 241 -11 1973 221 24 73 chrX 110191962 110192644 -52407286 - MER20B DNA MER1_type -36 747 100 1093 277 18 33 chrX 110192881 110193275 -52406655 - MER20B DNA MER1_type -296 487 100 695 250 75 46 chrX 110193756 110193996 -52405934 + MIR SINE MIR 15 261 -1 241 333 103 34 chrX 110194003 110194237 -52405693 + L2 LINE L2 2364 2613 -701 1163 241 16 0 chrX 110194456 110194705 -52405225 + MIR SINE MIR 5 257 -5 2174 247 77 10 chrX 110195841 110196763 -52403167 - L1ME LINE L1 -2393 3687 2704 1234 243 6 19 chrX 110196763 110197076 -52402854 - MLT1C LTR MaLR 0 467 159 2622 251 108 69 chrX 110197117 110197298 -52402632 - L1ME LINE L1 -4482 1779 1607 2309 147 28 33 chrX 110197298 110197726 -52402204 - MSTB LTR MaLR 0 426 1 2622 251 108 69 chrX 110197726 110199233 -52400697 - L1ME LINE L1 -4654 1607 6 715 255 19 34 chrX 110199491 110199754 -52400176 + MIR SINE MIR 4 262 0 434 289 24 47 chrX 110199795 110200051 -52399879 - L1MD2 LINE L1 -517 5842 5587 40032 39 26 1 chrX 110200294 110205506 -52394424 + L1P LINE L1 4 5346 -800 621 329 12 6 chrX 110206303 110206473 -52393457 - MIR3 SINE MIR -17 191 21 215 273 36 0 chrX 110206475 110206530 -52393400 - MIR SINE MIR -110 152 96 228 35 0 0 chrX 110206531 110206560 -52393370 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 205 273 0 23 chrX 110206875 110206919 -52393011 + L2 LINE L2 3139 3181 -91 294 150 43 7 chrX 110207123 110207192 -52392738 - MLT1G1 LTR MaLR 0 530 465 4755 159 45 22 chrX 110207473 110208453 -52391477 - L1MD2 LINE L1 -1 6358 5357 2943 245 26 16 chrX 110208457 110209380 -52390550 - L1MD2 LINE L1 -916 5230 4299 3376 44 0 0 chrX 110209819 110210230 -52389700 + L1PA5 LINE L1 5744 6154 0 572 239 14 7 chrX 110210255 110210397 -52389533 + MLT1I LTR MaLR 12 154 -255 194 290 214 23 chrX 110211442 110211573 -52388357 + MIR SINE MIR 97 252 -10 653 262 46 38 chrX 110212143 110212406 -52387524 + Charlie8 DNA MER1_type 1 265 -2152 1418 71 0 0 chrX 110212468 110212652 -52387278 - L1PA5 LINE L1 0 6154 5971 782 260 5 10 chrX 110212706 110212906 -52387024 + MER63A DNA MER1_type 12 210 0 384 286 148 39 chrX 110213464 110213646 -52386284 - MIR3 SINE MIR -4 204 3 323 279 0 0 chrX 110214065 110214144 -52385786 + MIR3 SINE MIR 115 193 -15 23 0 0 0 chrX 110216130 110216153 -52383777 + AT_rich Low_complexity Low_complexity 1 23 0 616 321 27 33 chrX 110216529 110216713 -52383217 + MIR3 SINE MIR 15 197 -11 538 276 180 28 chrX 110216742 110216959 -52382971 - MIR SINE MIR -8 254 5 21 0 0 0 chrX 110218058 110218079 -52381851 + AT_rich Low_complexity Low_complexity 1 21 0 573 331 27 33 chrX 110218458 110218642 -52381288 + MIR3 SINE MIR 15 197 -11 580 255 96 63 chrX 110218671 110218902 -52381028 - MIR SINE MIR -8 254 5 374 329 71 7 chrX 110219510 110219665 -52380265 - MIR3 SINE MIR 0 208 44 255 236 153 14 chrX 110219674 110219746 -52380184 - MIR SINE MIR -61 147 66 1266 153 0 0 chrX 110220752 110220942 -52378988 + AluJb SINE Alu 115 304 -8 23 33 0 0 chrX 110221302 110221332 -52378598 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chrX 110221340 110221377 -52378553 + AT_rich Low_complexity Low_complexity 1 37 0 258 352 0 0 chrX 110221444 110221569 -52378361 - L1ME LINE L1 -315 5855 5731 2717 83 25 5 chrX 110221602 110221997 -52377933 - L1MA1 LINE L1 0 6302 5900 1274 105 0 6 chrX 110223220 110223391 -52376539 - AluSx SINE Alu -142 170 1 1276 163 4 26 chrX 110223402 110223672 -52376258 - L1MD3 LINE L1 -2 7993 7730 1551 147 21 7 chrX 110223801 110224080 -52375850 + MSTB2 LTR MaLR 15 297 -160 592 139 0 0 chrX 110224080 110224166 -52375764 - AluJ/FLAM SINE Alu -226 86 1 412 207 189 0 chrX 110224298 110224409 -52375521 - MIR SINE MIR -130 132 1 186 43 0 0 chrX 110224417 110224440 -52375490 + (A)n Simple_repeat Simple_repeat 1 23 0 4236 249 99 24 chrX 110224531 110226088 -52373842 - L2 LINE L2 -1 3312 1638 468 171 117 45 chrX 110226150 110226261 -52373669 + MER5B DNA MER1_type 1 119 -59 369 0 0 0 chrX 110226266 110226307 -52373623 + (TG)n Simple_repeat Simple_repeat 2 42 0 332 271 32 5 chrX 110276818 110276934 -52322996 + MIR3 SINE MIR 57 177 -31 214 255 20 0 chrX 110278002 110278053 -52321877 - MIR SINE MIR -204 58 7 483 282 44 50 chrX 110278522 110278703 -52321227 + MIR SINE MIR 33 212 -50 267 275 8 23 chrX 110279672 110279803 -52320127 + CT-rich Low_complexity Low_complexity 3 131 0 285 29 0 0 chrX 110280465 110280499 -52319431 + (TG)n Simple_repeat Simple_repeat 2 35 0 739 327 76 60 chrX 110281161 110281543 -52318387 - L2 LINE L2 -11 3261 2874 669 217 51 6 chrX 110282797 110282954 -52316976 + MER103 DNA DNA 2 165 -1 252 260 66 112 chrX 110282987 110283245 -52316685 + MIR SINE MIR 17 262 0 212 202 24 36 chrX 110284297 110284381 -52315549 + G-rich Low_complexity Low_complexity 2 84 0 1023 247 64 89 chrX 110285525 110285663 -52314267 - L1ME4a LINE L1 -153 5968 5828 1760 69 0 9 chrX 110285663 110285881 -52314049 - L1PA8 LINE L1 -2 6170 5955 1023 247 64 89 chrX 110285881 110286616 -52313314 - L1ME4a LINE L1 -293 5828 5122 404 265 119 32 chrX 110286598 110286817 -52313113 - L1ME LINE L1 -385 5736 5499 * 21 0 0 0 chrX 110288097 110288118 -52311812 + AT_rich Low_complexity Low_complexity 1 21 0 497 298 5 61 chrX 110288472 110288670 -52311260 + MIR3 SINE MIR 3 189 -19 425 197 68 43 chrX 110288709 110288826 -52311104 + MER5B DNA MER1_type 29 148 -30 550 264 28 7 chrX 110289547 110289691 -52310239 - MIR SINE MIR -12 250 104 308 333 98 0 chrX 110289791 110289914 -52310016 - MIR SINE MIR -127 135 1 972 151 0 25 chrX 110290866 110291025 -52308905 + FRAM SINE Alu 1 146 -30 238 365 0 0 chrX 110291078 110291152 -52308778 + MIR SINE MIR 66 139 -69 620 230 60 55 chrX 110291268 110291482 -52308448 + MIR SINE MIR 1 203 -59 658 240 104 5 chrX 110291549 110291741 -52308189 + MIR SINE MIR 51 261 -1 638 181 38 0 chrX 110292555 110292688 -52307242 - MIR SINE MIR 0 262 125 558 222 0 8 chrX 110292692 110292809 -52307121 - MIR SINE MIR 0 262 147 1122 292 135 29 chrX 110293179 110294097 -52305833 - L2 LINE L2 0 3313 2311 196 339 62 0 chrX 110294143 110294208 -52305722 + L2 LINE L2 3141 3209 -63 704 249 0 18 chrX 110294892 110295057 -52304873 - MER5B DNA MER1_type -16 162 1 196 372 27 34 chrX 110295057 110295201 -52304729 + L2 LINE L2 358 500 -2814 32 43 0 0 chrX 110295271 110295317 -52304613 + AT_rich Low_complexity Low_complexity 1 46 0 916 261 180 33 chrX 110295525 110296075 -52303855 - L2 LINE L2 -1 3312 2700 1031 334 168 21 chrX 110296077 110296456 -52303474 + L2 LINE L2 732 1054 -2260 561 236 169 0 chrX 110296456 110296604 -52303326 - MER5B DNA MER1_type -1 177 5 1031 334 168 21 chrX 110296604 110297932 -52301998 + L2 LINE L2 1054 2735 -579 476 266 109 49 chrX 110299023 110299207 -52300723 + MIR3 SINE MIR 12 206 -2 501 357 34 17 chrX 110299415 110299650 -52300280 - MIR SINE MIR 0 262 24 622 157 141 16 chrX 110299698 110299862 -52300068 - MER5A DNA MER1_type 0 189 4 265 287 81 0 chrX 110299919 110300006 -52299924 - MER91C DNA MER1_type -17 123 30 482 107 0 12 chrX 110300222 110300306 -52299624 + (GCTG)n Simple_repeat Simple_repeat 2 84 0 623 306 23 49 chrX 110300931 110301123 -52298807 + MIR SINE MIR 5 190 -72 1114 236 19 12 chrX 110301123 110301382 -52298548 - MIR SINE MIR 0 262 2 623 306 23 49 chrX 110301382 110301454 -52298476 + MIR SINE MIR 190 262 0 220 186 14 14 chrX 110301825 110301895 -52298035 + GA-rich Low_complexity Low_complexity 1 70 0 696 227 163 20 chrX 110301994 110302245 -52297685 + L1ME4a LINE L1 5824 6110 -11 1960 225 54 6 chrX 110302817 110303351 -52296579 - L1M4 LINE L1 -1261 4885 4326 1628 109 4 19 chrX 110303367 110303624 -52296306 - L1P LINE L1 -743 5403 5151 2926 67 3 0 chrX 110303624 110303978 -52295952 + L1PA8 LINE L1 5805 6163 -9 1039 228 69 20 chrX 110303979 110304282 -52295648 - L1M4 LINE L1 -1814 4332 4015 2474 167 25 2 chrX 110304299 110304731 -52295199 - L1MB8 LINE L1 -16 6162 5721 2326 214 12 2 chrX 110304738 110305251 -52294679 - L1MB8 LINE L1 -842 5304 4787 316 239 0 22 chrX 110305267 110305359 -52294571 - L1MC4 LINE L1 -1339 6703 6614 306 175 125 25 chrX 110305356 110305436 -52294494 - L1MB8 LINE L1 -1971 4175 4088 * 13755 97 23 17 chrX 110305429 110307454 -52292476 + L1PA6 LINE L1 631 2668 -3478 17044 68 2 0 chrX 110307454 110310326 -52289604 + L1PA6 LINE L1 3271 6150 -4 265 217 67 0 chrX 110310337 110310397 -52289533 - L1MB8 LINE L1 -2068 4078 4015 4478 210 21 18 chrX 110310452 110311508 -52288422 - L1M4 LINE L1 -1349 4797 3739 3677 219 30 36 chrX 110311532 110311851 -52288079 - L1MB8 LINE L1 -2153 3993 3674 840 55 62 0 chrX 110311851 110311996 -52287934 + CT-rich Low_complexity Low_complexity 2 155 0 3677 219 30 36 chrX 110311996 110312501 -52287429 - L1MB8 LINE L1 -2472 3674 3174 2274 83 20 0 chrX 110312501 110312803 -52287127 - AluY SINE Alu -3 308 1 3677 219 30 36 chrX 110312803 110313040 -52286890 - L1MB8 LINE L1 -2972 3174 2937 1560 198 228 129 chrX 110313043 110313564 -52286366 - MLT1E2 LTR MaLR -81 545 1 4486 118 33 2 chrX 110313731 110314364 -52285566 - MER39B LTR ERV1 0 653 1 1825 214 38 24 chrX 110314375 110314752 -52285178 + L1MC4 LINE L1 7403 7911 -131 252 0 0 0 chrX 110314752 110314780 -52285150 + (TG)n Simple_repeat Simple_repeat 2 29 0 1825 214 38 24 chrX 110314780 110314868 -52285062 + L1MC4 LINE L1 7911 7996 -46 649 219 19 32 chrX 110314875 110315030 -52284900 + MLT1E1 LTR MaLR 392 605 -49 237 329 88 34 chrX 110315061 110315389 -52284541 - L2 LINE L2 -748 2566 2221 778 248 32 40 chrX 110315480 110315730 -52284200 + MIR SINE MIR 15 262 0 198 0 0 0 chrX 110315812 110315834 -52284096 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 336 111 0 0 chrX 110316680 110316704 -52283226 + (TG)n Simple_repeat Simple_repeat 1 78 0 336 111 0 0 chrX 110316704 110316758 -52283172 + (TG)n Simple_repeat Simple_repeat 1 54 0 1071 309 10 0 chrX 110316994 110317307 -52282623 + L2 LINE L2 2344 2659 -655 299 224 0 112 chrX 110317307 110317405 -52282525 + MER91B DNA MER1_type 1 87 -103 189 107 0 0 chrX 110317534 110317562 -52282368 + (CA)n Simple_repeat Simple_repeat 1 28 0 243 283 33 17 chrX 110317917 110317977 -52281953 + MER91B DNA MER1_type 129 189 -1 1523 159 0 0 chrX 110318056 110318288 -52281642 + AluJb SINE Alu 1 232 -80 490 316 98 20 chrX 110318321 110318565 -52281365 + L2 LINE L2 2715 2977 -337 * 536 265 38 15 chrX 110318564 110318696 -52281234 + L2 LINE L2 3138 3272 0 512 241 73 27 chrX 110318882 110319069 -52280861 - MIR SINE MIR -4 258 64 302 230 69 23 chrX 110319844 110319931 -52279999 - MIR3 SINE MIR -7 201 111 294 95 0 0 chrX 110319958 110320000 -52279930 + (TG)n Simple_repeat Simple_repeat 2 43 0 291 289 23 0 chrX 110320707 110320795 -52279135 + MIR SINE MIR 35 135 -73 323 263 185 54 chrX 110321051 110321256 -52278674 + MIR SINE MIR 16 247 -15 421 222 111 37 chrX 110321331 110321466 -52278464 - MER5A DNA MER1_type -44 145 1 530 274 77 0 chrX 110321469 110321637 -52278293 - MER112 DNA MER1_type -1 259 79 227 209 11 66 chrX 110321642 110321733 -52278197 + L1MC4 LINE L1 6621 6706 -1336 362 225 38 0 chrX 110322322 110322402 -52277528 - Charlie8 DNA MER1_type -2178 239 157 225 225 100 12 chrX 110322571 110322651 -52277279 - Charlie8 DNA MER1_type -2236 181 95 * 509 322 23 17 chrX 110322641 110322818 -52277112 - Charlie8 DNA MER1_type -2239 178 1 435 313 110 6 chrX 110322818 110323000 -52276930 - MIR3 SINE MIR -3 205 5 449 246 20 80 chrX 110323300 110323507 -52276423 + MIR SINE MIR 9 219 -43 222 306 73 24 chrX 110323538 110323662 -52276268 - L2 LINE L2 -2 3311 3182 1877 160 0 13 chrX 110324055 110324368 -52275562 + AluJb SINE Alu 1 309 -3 425 309 0 7 chrX 110324426 110324562 -52275368 + MIR SINE MIR 127 261 -1 854 272 0 0 chrX 110324621 110324816 -52275114 + MIR SINE MIR 66 260 -2 1162 276 25 77 chrX 110325023 110325645 -52274285 - L2 LINE L2 -9 3304 2705 1601 307 57 64 chrX 110325913 110326787 -52273143 - L3 LINE CR1 -143 1434 567 486 312 34 17 chrX 110327100 110327367 -52272563 - L1MC4a LINE L1 -154 5967 5690 307 301 30 45 chrX 110327900 110328033 -52271897 + MIR SINE MIR 18 148 -114 322 303 64 0 chrX 110328113 110328222 -52271708 + MIR SINE MIR 147 262 0 909 306 54 59 chrX 110328710 110329232 -52270698 + L2 LINE L2 2571 3095 -218 714 234 23 29 chrX 110329232 110329407 -52270523 + MER5B DNA MER1_type 1 174 -4 909 306 54 59 chrX 110329407 110329478 -52270452 + L2 LINE L2 3095 3165 -148 493 273 12 19 chrX 110329483 110329644 -52270286 - L2 LINE L2 -4 3309 3150 818 201 0 34 chrX 110329657 110329836 -52270094 + MLT1B LTR MaLR 1 173 -201 225 65 0 0 chrX 110329839 110329870 -52270060 + (TC)n Simple_repeat Simple_repeat 1 31 0 1114 184 20 5 chrX 110329890 110330091 -52269839 + MLT1B LTR MaLR 187 390 0 4357 246 73 31 chrX 110330091 110330909 -52269021 - L2 LINE L2 -158 3155 2244 2044 186 28 17 chrX 110330909 110331269 -52268661 + MLT1A1 LTR MaLR 2 365 0 4357 246 73 31 chrX 110331269 110331861 -52268069 - L2 LINE L2 -1069 2244 1679 545 162 120 0 chrX 110331880 110331997 -52267933 + L2 LINE L2 3183 3313 0 205 146 98 0 chrX 110332652 110332693 -52267237 + L2 LINE L2 3227 3271 -1 266 281 0 0 chrX 110332752 110332809 -52267121 - MIR SINE MIR -193 69 13 34 34 0 17 chrX 110332866 110332901 -52267029 + AT_rich Low_complexity Low_complexity 1 36 -22 2067 123 21 0 chrX 110332901 110333186 -52266744 + AluSx SINE Alu 1 291 -21 34 34 0 17 chrX 110333186 110333209 -52266721 + AT_rich Low_complexity Low_complexity 36 58 0 404 184 11 58 chrX 110333454 110333541 -52266389 - L2 LINE L2 -22 3291 3209 2106 203 25 11 chrX 110333545 110333988 -52265942 + L1MD3 LINE L1 7537 7985 -10 647 281 130 17 chrX 110334055 110334354 -52265576 - L2 LINE L2 -121 3192 2860 21 0 0 0 chrX 110335218 110335239 -52264691 + AT_rich Low_complexity Low_complexity 1 21 0 1071 227 36 8 chrX 110335347 110335594 -52264336 - MIR SINE MIR -4 258 5 336 279 14 21 chrX 110335868 110336008 -52263922 - MIR3 SINE MIR -46 162 24 944 185 92 0 chrX 110336100 110336273 -52263657 + MER5A DNA MER1_type 1 189 0 346 354 32 19 chrX 110336613 110336771 -52263159 - L3 LINE CR1 -3 1574 1415 239 288 41 0 chrX 110336862 110336935 -52262995 - L2 LINE L2 -183 3089 3014 834 274 4 34 chrX 110337059 110337293 -52262637 + MIR SINE MIR 16 242 -20 611 231 28 14 chrX 110339255 110339398 -52260532 - MER5B DNA MER1_type 0 178 34 1515 205 16 22 chrX 110339408 110339780 -52260150 + L1MC4 LINE L1 7687 7995 0 350 248 219 0 chrX 110339917 110340022 -52259908 - MER5A DNA MER1_type 0 189 62 816 254 10 25 chrX 110340023 110340246 -52259684 - AluJb SINE Alu 0 334 115 758 220 19 6 chrX 110341103 110341262 -52258668 + MIR SINE MIR 29 189 -73 497 284 53 42 chrX 110341356 110341546 -52258384 + MIR SINE MIR 52 243 -19 484 292 26 31 chrX 110341788 110341980 -52257950 + MIR SINE MIR 23 213 -49 539 192 10 0 chrX 110342235 110342339 -52257591 - L1MB5 LINE L1 0 6174 6070 551 313 57 16 chrX 110342947 110343139 -52256791 - MIR SINE MIR 0 262 63 222 314 58 19 chrX 110343246 110343402 -52256528 + MIR SINE MIR 43 204 -58 2879 154 12 2 chrX 110343634 110344056 -52255874 + MSTB LTR MaLR 1 426 0 305 228 0 50 chrX 110344211 110344312 -52255618 + MIR SINE MIR 158 253 -9 372 328 0 49 chrX 110345029 110345212 -52254718 - L1MC4a LINE L1 -1903 5905 5732 1390 199 48 20 chrX 110345988 110346280 -52253650 - AluJo SINE Alu -12 300 1 377 326 64 2 chrX 110346389 110346580 -52253350 - MIR SINE MIR -43 219 22 280 311 119 47 chrX 110347183 110347460 -52252470 + L2 LINE L2 2461 2757 -557 184 395 60 16 chrX 110347834 110348019 -52251911 + L2 LINE L2 2866 3058 -214 351 237 140 0 chrX 110348157 110348271 -52251659 + MIR SINE MIR 107 236 -26 3373 160 41 5 chrX 110348416 110349008 -52250922 - L1MB2 LINE L1 -273 5898 5280 228 67 0 0 chrX 110349008 110349038 -52250892 + (TTG)n Simple_repeat Simple_repeat 1 30 0 3373 160 41 5 chrX 110349038 110349204 -52250726 - L1MB2 LINE L1 -891 5280 5121 195 42 0 0 chrX 110349701 110349725 -52250205 + (TG)n Simple_repeat Simple_repeat 2 25 0 353 180 30 10 chrX 110349928 110350028 -52249902 + GA-rich Low_complexity Low_complexity 3 104 0 7151 218 28 25 chrX 110350200 110350462 -52249468 + L1MB3 LINE L1 2899 3159 -3024 209 33 33 0 chrX 110350462 110350492 -52249438 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 7151 218 28 25 chrX 110350492 110352697 -52247233 + L1MB3 LINE L1 3159 5323 -860 1758 179 23 10 chrX 110352697 110353005 -52246925 + AluJb SINE Alu 1 312 0 7151 218 28 25 chrX 110353005 110353787 -52246143 + L1MB3 LINE L1 5323 6101 -82 1110 149 5 0 chrX 110353803 110353997 -52245933 + L1PB1 LINE L1 3 197 -6666 8990 112 25 5 chrX 110353998 110356202 -52243728 + L1PB1 LINE L1 634 3079 -3783 6606 72 1 4 chrX 110356173 110357789 -52242141 - L1PA7 LINE L1 0 6154 4543 * 12930 186 6 8 chrX 110357787 110361252 -52238678 + L1PB1 LINE L1 3051 6507 -360 293 155 17 0 chrX 110361252 110361310 -52238620 + (TA)n Simple_repeat Simple_repeat 2 60 0 2578 79 11 24 chrX 110361310 110361689 -52238241 + L1PB1 LINE L1 6491 6864 -3 473 114 11 0 chrX 110361698 110361786 -52238144 + L1MB4 LINE L1 6092 6180 0 509 211 141 0 chrX 110361960 110362088 -52237842 - MIR SINE MIR 0 262 117 1671 188 3 13 chrX 110362138 110362452 -52237478 + AluJo SINE Alu 1 311 -1 1343 167 4 37 chrX 110362592 110362862 -52237068 - Tigger2 DNA MER2_type 0 2718 2458 3681 127 27 2 chrX 110362925 110363545 -52236385 - Tigger2 DNA MER2_type -1974 744 109 311 171 27 18 chrX 110363842 110363953 -52235977 + (TGGA)n Simple_repeat Simple_repeat 4 115 0 1558 183 111 0 chrX 110365038 110365458 -52234472 + Charlie4a DNA MER1_type 22 507 -1 210 286 16 0 chrX 110367533 110367596 -52232334 + GA-rich Low_complexity Low_complexity 1 64 0 413 212 91 10 chrX 110367988 110368087 -52231843 + MIR SINE MIR 29 135 -73 1887 177 0 16 chrX 110368102 110368470 -52231460 + AluJb SINE Alu 1 363 0 291 310 115 35 chrX 110368970 110369144 -52230786 - MIR SINE MIR -12 250 63 279 259 52 86 chrX 110369188 110369304 -52230626 - MIR SINE MIR -62 146 35 376 290 77 71 chrX 110369566 110369601 -52230329 - L1ME LINE L1 -502 5619 5586 1839 130 88 25 chrX 110369601 110369954 -52229976 - THE1C LTR MaLR 0 375 1 376 290 77 71 chrX 110369954 110370224 -52229706 - L1ME LINE L1 -535 5586 5309 2016 158 0 0 chrX 110370224 110370528 -52229402 - AluSx SINE Alu -8 304 1 376 290 77 71 chrX 110370528 110370578 -52229352 - L1ME LINE L1 -812 5309 5261 223 232 125 0 chrX 110370895 110370951 -52228979 + L2 LINE L2 3199 3261 -11 689 312 36 28 chrX 110371210 110371463 -52228467 + MIR SINE MIR 8 262 0 226 378 45 18 chrX 110371521 110371632 -52228298 + MIR3 SINE MIR 8 121 -87 1096 239 13 4 chrX 110371868 110372107 -52227823 + MIR SINE MIR 6 246 -16 261 371 112 0 chrX 110372132 110372302 -52227628 + L3 LINE CR1 1384 1572 -5 279 140 0 0 chrX 110373278 110373328 -52226602 + (A)n Simple_repeat Simple_repeat 1 50 0 565 298 66 26 chrX 110373424 110373652 -52226278 + MIR SINE MIR 23 259 -3 294 325 227 5 chrX 110373792 110373986 -52225944 + MIR SINE MIR 2 238 -24 229 304 0 13 chrX 110375376 110375455 -52224475 + MIR SINE MIR 178 255 -7 711 226 40 34 chrX 110375653 110375830 -52224100 - MER45A DNA AcHobo 0 178 1 2112 125 0 16 chrX 110376290 110376594 -52223336 + AluJo SINE Alu 1 299 -13 405 330 26 19 chrX 110376709 110376973 -52222957 - L1MEd LINE L1 -5297 822 557 327 261 125 0 chrX 110377451 110377539 -52222391 - MIR SINE MIR -66 142 44 313 213 0 0 chrX 110379422 110379483 -52220447 - MIR SINE MIR -12 250 190 305 311 59 37 chrX 110379654 110379789 -52220141 + MIR SINE MIR 83 220 -42 839 267 28 4 chrX 110379822 110380077 -52219853 + MIR SINE MIR 2 262 0 199 316 92 51 chrX 110380516 110380614 -52219316 - L2 LINE L2 -78 3194 3093 224 253 40 27 chrX 110381000 110381075 -52218855 - L2 LINE L2 -557 2757 2682 2966 280 98 46 chrX 110381083 110382752 -52217178 + L2 LINE L2 1567 3310 -3 225 313 158 26 chrX 110383038 110383303 -52216627 - L2 LINE L2 -823 2491 2192 591 169 34 8 chrX 110384467 110384585 -52215345 + L2 LINE L2 3193 3313 0 273 29 0 0 chrX 110384969 110385003 -52214927 + (TG)n Simple_repeat Simple_repeat 2 35 0 701 256 7 62 chrX 110385727 110386000 -52213930 - MIR SINE MIR 0 262 5 243 315 0 22 chrX 110389209 110389298 -52210632 + CT-rich Low_complexity Low_complexity 1 87 0 387 309 76 37 chrX 110389901 110390283 -52209647 - L1MC4a LINE L1 -1904 5904 5508 1529 87 9 0 chrX 110390338 110390593 -52209337 + L1P5 LINE L1 5236 5492 -659 440 237 57 56 chrX 110390574 110390878 -52209052 - L1MC4 LINE L1 -55 7920 7609 * 6314 197 57 22 chrX 110390958 110392444 -52207486 - L1MB7 LINE L1 -19 6165 4547 1604 164 39 43 chrX 110392444 110392749 -52207181 - AluJo SINE Alu -3 309 6 6314 197 57 22 chrX 110392749 110393912 -52206018 - L1MB7 LINE L1 -1637 4547 3427 411 265 20 7 chrX 110394020 110394171 -52205759 - L1MC5 LINE L1 -519 7442 7290 286 278 0 8 chrX 110394263 110394389 -52205541 - L1M LINE L1 -785 5379 5255 24 67 0 0 chrX 110394468 110394513 -52205417 + AT_rich Low_complexity Low_complexity 1 45 0 364 279 86 21 chrX 110394719 110395092 -52204838 - L1M4 LINE L1 -1450 4696 4300 1756 161 0 11 chrX 110395104 110395378 -52204552 - AluJb SINE Alu -19 293 23 281 291 61 7 chrX 110395464 110395612 -52204318 - L1M4 LINE L1 -1985 4161 4006 234 91 0 0 chrX 110395988 110396021 -52203909 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 479 308 86 5 chrX 110396464 110396662 -52203268 + MIR SINE MIR 47 260 -2 1424 113 52 0 chrX 110396908 110397120 -52202810 + AluSg/x SINE Alu 78 300 -12 7072 221 15 26 chrX 110397551 110397579 -52202351 - L1 LINE L1 -1856 4290 4263 4672 104 11 5 chrX 110397579 110398216 -52201714 - L1PA16 LINE L1 -9 6157 5517 7072 221 15 26 chrX 110398216 110399981 -52199949 - L1 LINE L1 -1883 4263 2516 483 271 0 0 chrX 110400064 110400182 -52199748 - MIR SINE MIR -63 199 82 535 295 46 40 chrX 110400185 110400531 -52199399 - L1M4 LINE L1 -1732 4414 4067 876 257 59 13 chrX 110400554 110400791 -52199139 - MIR SINE MIR 0 262 15 861 283 149 33 chrX 110400823 110401578 -52198352 - L1M4 LINE L1 -2154 3992 3087 1876 147 3 20 chrX 110401578 110401884 -52198046 - AluJo SINE Alu -11 301 1 861 283 149 33 chrX 110401884 110402151 -52197779 - L1M4 LINE L1 -3059 3087 2852 234 0 0 0 chrX 110403396 110403422 -52196508 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 222 282 64 13 chrX 110403902 110403980 -52195950 - MIR3 SINE MIR 0 208 127 196 271 0 34 chrX 110403974 110404033 -52195897 - MIR SINE MIR -96 166 110 * 398 266 36 89 chrX 110404552 110404800 -52195130 + MIR SINE MIR 28 262 0 319 334 0 11 chrX 110405380 110405507 -52194423 + MIR SINE MIR 30 153 -66 779 227 141 10 chrX 110405587 110405785 -52194145 - MER46C DNA MER2_type -91 247 24 12237 156 25 16 chrX 110406464 110407483 -52192447 + L1MA8 LINE L1 2941 3950 -2341 2761 151 19 7 chrX 110407483 110407901 -52192029 + MSTB LTR MaLR 4 426 0 9513 188 25 6 chrX 110407901 110409522 -52190408 + MSTB-int LTR MaLR 1 1651 0 2520 182 19 5 chrX 110409524 110409942 -52189988 + MSTB LTR MaLR 3 426 0 12237 156 25 16 chrX 110409942 110411479 -52188451 + L1MA8 LINE L1 3950 5542 -749 16438 126 13 16 chrX 110411479 110413904 -52186026 + Tigger1 DNA MER2_type 2 2418 0 12237 156 25 16 chrX 110413904 110414493 -52185437 + L1MA8 LINE L1 5542 6124 -167 1553 161 17 58 chrX 110414493 110414785 -52185145 + AluJb SINE Alu 1 280 -32 385 39 0 19 chrX 110414795 110414847 -52185083 + Tigger1 DNA MER2_type 1714 1764 -654 971 128 43 6 chrX 110414852 110415016 -52184914 + L1MA8 LINE L1 6115 6284 -7 283 324 14 88 chrX 110415107 110415255 -52184675 + L2 LINE L2 3132 3268 -4 217 278 120 37 chrX 110415362 110415470 -52184460 + L2 LINE L2 3193 3309 -4 223 378 17 34 chrX 110416133 110416252 -52183678 + L2 LINE L2 3154 3270 -2 193 315 68 0 chrX 110417147 110417220 -52182710 - L2 LINE L2 -1 3271 3194 288 130 0 0 chrX 110419344 110419390 -52180540 + (TG)n Simple_repeat Simple_repeat 1 46 0 333 0 0 0 chrX 110420417 110420454 -52179476 + (TG)n Simple_repeat Simple_repeat 1 37 0 261 155 0 0 chrX 110421035 110421093 -52178837 + A-rich Low_complexity Low_complexity 1 58 0 764 205 22 65 chrX 110421280 110421465 -52178465 + MER5B DNA MER1_type 1 177 -1 695 302 5 19 chrX 110421480 110421692 -52178238 - MIR SINE MIR -53 209 1 826 141 39 6 chrX 110422037 110422193 -52177737 - LTR65 LTR ERV1 -499 170 10 649 223 22 80 chrX 110422365 110422589 -52177341 + L1MD3 LINE L1 7784 7994 -1 216 344 26 26 chrX 110422825 110423017 -52176913 - L2 LINE L2 -240 3032 2841 247 298 76 47 chrX 110423098 110423269 -52176661 + L2 LINE L2 3119 3294 -19 21 0 0 0 chrX 110424049 110424070 -52175860 + AT_rich Low_complexity Low_complexity 1 21 0 239 298 128 11 chrX 110424720 110424814 -52175116 - MIR SINE MIR -71 137 33 701 243 58 101 chrX 110425684 110425864 -52174066 - L1MC4a LINE L1 -670 5634 5788 775 196 19 6 chrX 110425864 110426022 -52173908 + L1MA10 LINE L1 6175 6334 0 701 243 58 101 chrX 110426022 110426290 -52173640 - L1MC4a LINE L1 -515 5789 5511 335 290 57 42 chrX 110426440 110426632 -52173298 + MIR3 SINE MIR 6 212 -50 233 254 91 0 chrX 110427644 110427699 -52172231 + MIR SINE MIR 20 79 -183 2532 73 0 0 chrX 110427962 110428264 -52171666 - AluSq SINE Alu -4 309 8 378 0 0 0 chrX 110430416 110430458 -52169472 + (CA)n Simple_repeat Simple_repeat 2 43 0 180 0 0 0 chrX 110432456 110432476 -52167454 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 218 372 21 32 chrX 110435237 110435331 -52164599 + L2 LINE L2 3142 3234 -38 2293 160 6 9 chrX 110435908 110436246 -52163684 + MER1B DNA MER1_type 1 337 0 717 181 13 207 chrX 110436496 110436591 -52163339 + MIR SINE MIR 17 129 -133 250 81 0 27 chrX 110436591 110436628 -52163302 + U2 snRNA snRNA 1 36 -152 717 181 13 207 chrX 110436628 110436800 -52163130 + MIR SINE MIR 129 261 -1 186 299 35 35 chrX 110436741 110436828 -52163102 - MIR SINE MIR -21 241 155 * 413 296 74 26 chrX 110437428 110437658 -52162272 + MIR SINE MIR 19 259 -3 344 271 24 0 chrX 110437788 110437873 -52162057 - MIR SINE MIR -68 140 54 349 299 171 29 chrX 110438387 110438668 -52161262 + L2 LINE L2 1951 2271 -1043 205 222 0 44 chrX 110439196 110439241 -52160689 - MIR SINE MIR -107 155 113 184 282 165 0 chrX 110440014 110440099 -52159831 + L2 LINE L2 2983 3081 -191 375 292 73 98 chrX 110440639 110440913 -52159017 + L2 LINE L2 2970 3236 -36 4965 45 0 17 chrX 110441142 110441725 -52158205 - L1PA5 LINE L1 -6 6148 5576 262 217 60 60 chrX 110441807 110441890 -52158040 + L2 LINE L2 3231 3313 0 298 200 0 15 chrX 110443065 110443130 -52156800 + MIR3 SINE MIR 109 172 -36 193 207 281 12 chrX 110446089 110446171 -52153759 - MIR SINE MIR -87 121 18 230 0 33 0 chrX 110446332 110446362 -52153568 + (CAG)n Simple_repeat Simple_repeat 3 33 0 221 237 0 0 chrX 110447264 110447302 -52152628 + L2 LINE L2 3149 3186 -86 205 258 0 0 chrX 110447592 110447658 -52152272 + A-rich Low_complexity Low_complexity 1 66 0 253 287 65 0 chrX 110447945 110448053 -52151877 - MIR SINE MIR 0 262 148 318 243 0 14 chrX 110448096 110448170 -52151760 - MIR SINE MIR -96 166 94 2303 92 0 0 chrX 110449237 110449529 -52150401 - AluSp SINE Alu -17 296 5 430 277 67 39 chrX 110449966 110450251 -52149679 - LTR16C LTR ERVL -2 489 197 705 160 90 0 chrX 110450690 110450846 -52149084 + L1MB3 LINE L1 5854 6023 -160 1726 131 23 80 chrX 110450846 110451191 -52148739 + THE1C LTR MaLR 1 322 -53 2622 84 28 11 chrX 110451191 110451549 -52148381 + THE1B LTR MaLR 1 364 0 1726 131 23 80 chrX 110451549 110451601 -52148329 + THE1C LTR MaLR 322 375 0 1009 64 58 6 chrX 110451601 110451757 -52148173 + L1MB3 LINE L1 6019 6182 -1 1289 242 89 40 chrX 110451760 110452231 -52147699 - MLT1E2 LTR MaLR -59 567 74 310 312 98 12 chrX 110454497 110454670 -52145260 + MIR SINE MIR 35 222 -40 198 364 59 17 chrX 110454894 110455012 -52144918 - L2 LINE L2 -17 3255 3133 195 42 0 0 chrX 110455615 110455639 -52144291 + (TA)n Simple_repeat Simple_repeat 2 25 0 218 189 0 0 chrX 110456307 110456344 -52143586 + GA-rich Low_complexity Low_complexity 1 37 0 2515 74 0 6 chrX 110459204 110459515 -52140415 + AluY SINE Alu 1 309 -2 559 220 35 16 chrX 110463730 110463907 -52136023 + MIR SINE MIR 20 195 -62 834 201 105 28 chrX 110464173 110464526 -52135404 - L1ME4a LINE L1 -28 6093 5714 231 133 0 0 chrX 110465163 110465208 -52134722 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 522 283 120 39 chrX 110465624 110465857 -52134073 - MIR SINE MIR -8 254 3 326 271 114 43 chrX 110467624 110467764 -52132166 + L3b LINE CR1 1292 1441 -142 383 310 44 32 chrX 110468052 110468245 -52131685 - MIR SINE MIR -41 221 27 253 279 66 74 chrX 110470012 110470134 -52129796 - L2 LINE L2 -28 3285 3165 216 204 23 0 chrX 110471692 110471736 -52128194 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 1129 306 133 68 chrX 110471742 110474001 -52125929 - L2 LINE L2 -38 3234 800 503 280 48 6 chrX 110474001 110474169 -52125761 - MER5B DNA MER1_type -3 175 1 1129 306 133 68 chrX 110474169 110474270 -52125660 - L2 LINE L2 -2472 800 707 515 304 50 0 chrX 110474581 110474742 -52125188 + MER5B DNA MER1_type 6 174 -4 631 302 116 17 chrX 110475311 110475543 -52124387 + MIR SINE MIR 6 260 -2 375 308 55 96 chrX 110475549 110476075 -52123855 - L2 LINE L2 -43 3229 2734 878 122 15 0 chrX 110476085 110476216 -52123714 + AluSg/x SINE Alu 167 299 -11 189 0 0 0 chrX 110476221 110476242 -52123688 + (CA)n Simple_repeat Simple_repeat 2 22 0 485 300 67 17 chrX 110476303 110476483 -52123447 - L2 LINE L2 -696 2618 2430 486 238 0 83 chrX 110477219 110477400 -52122530 + MER69A DNA AcHobo 12 177 0 22 0 0 0 chrX 110478750 110478772 -52121158 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrX 110480214 110480234 -52119696 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2459 117 8 0 chrX 110485711 110486063 -52113867 - THE1A LTR MaLR 0 355 1 11811 90 4 1 chrX 110486063 110487638 -52112292 - THE1A-int LTR MaLR 0 1580 1 2723 82 3 0 chrX 110487638 110487991 -52111939 - THE1A LTR MaLR 0 355 2 3166 163 19 6 chrX 110488795 110489336 -52110594 - MER44D DNA MER2_type -1 604 2 1583 251 16 16 chrX 110489787 110490296 -52109634 - L1ME1 LINE L1 -9 6157 5649 486 273 0 9 chrX 110490401 110490511 -52109419 - MIR SINE MIR -73 189 81 282 259 13 13 chrX 110490540 110490630 -52109300 - MIR SINE MIR -81 127 37 3398 135 29 3 chrX 110490958 110491552 -52108378 + L1MB3 LINE L1 5573 6181 -2 726 294 56 4 chrX 110491567 110491798 -52108132 + MIR SINE MIR 20 262 0 1999 158 0 0 chrX 110492450 110492747 -52107183 + AluJb SINE Alu 1 297 -15 218 308 0 31 chrX 110492854 110492919 -52107011 + L2 LINE L2 3203 3265 -7 636 323 134 45 chrX 110492921 110493631 -52106299 - L2 LINE L2 -216 3056 2285 497 273 99 0 chrX 110494323 110494444 -52105486 - MER5A DNA MER1_type -1 188 56 2440 81 13 0 chrX 110494740 110495049 -52104881 + AluSp SINE Alu 1 313 0 1885 231 48 5 chrX 110495223 110495664 -52104266 - MER110 LTR ERV1 -15 476 17 504 177 42 0 chrX 110495662 110495758 -52104172 - MER110 LTR ERV1 -391 100 1 * 202 50 50 25 chrX 110497370 110497410 -52102520 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1172 194 40 43 chrX 110497418 110497672 -52102258 - MER33 DNA MER1_type -2262 323 70 276 53 0 0 chrX 110497672 110497710 -52102220 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 7557 26 1 0 chrX 110497710 110499123 -52100807 - L1PA4 LINE L1 -13 6142 4728 1172 194 40 43 chrX 110499123 110499191 -52100739 - MER33 DNA MER1_type -2513 72 1 1181 155 11 0 chrX 110499208 110499389 -52100541 - MER5A DNA MER1_type -3 186 4 264 77 0 0 chrX 110500191 110500230 -52099700 + (GAA)n Simple_repeat Simple_repeat 1 39 0 700 299 102 18 chrX 110501640 110501924 -52098006 + L2 LINE L2 2965 3272 0 845 204 30 65 chrX 110502185 110502386 -52097544 + MER20 DNA MER1_type 18 211 -8 403 318 119 30 chrX 110502539 110502781 -52097149 - MIR SINE MIR 0 262 4 341 253 13 20 chrX 110503440 110503543 -52096387 + MIR SINE MIR 66 162 -62 1661 184 14 0 chrX 110503553 110503831 -52096099 - AluJo SINE Alu -30 282 1 481 289 5 13 chrX 110503894 110504078 -52095852 + MIR SINE MIR 35 262 0 684 256 36 6 chrX 110504138 110504306 -52095624 + MIR SINE MIR 48 220 -42 2118 60 0 0 chrX 110504849 110505116 -52094814 + L1PA7 LINE L1 5886 6152 -2 223 345 109 27 chrX 110506336 110506446 -52093484 - L2 LINE L2 -8 3264 3146 204 135 0 0 chrX 110506711 110506748 -52093182 + (GA)n Simple_repeat Simple_repeat 2 38 0 424 305 38 0 chrX 110506792 110506923 -52093007 - L2 LINE L2 -213 3059 2924 649 314 93 39 chrX 110507054 110507516 -52092414 - L2 LINE L2 -431 2883 2397 371 219 167 0 chrX 110507793 110507889 -52092041 - L2 LINE L2 0 3313 3202 519 236 39 60 chrX 110508604 110508837 -52091093 - MARNA DNA Mariner -72 514 287 909 228 24 51 chrX 110508874 110509128 -52090802 + L1MB7 LINE L1 5928 6174 -10 259 246 0 18 chrX 110509237 110509294 -52090636 + L2 LINE L2 3245 3300 -13 685 272 12 16 chrX 110509365 110509585 -52090345 - L1P4 LINE L1 -574 5592 5370 1716 159 23 3 chrX 110509585 110509887 -52090043 - L1PA16 LINE L1 -10 6156 5849 685 272 12 16 chrX 110509887 110509905 -52090025 - L1P4 LINE L1 -796 5370 5353 189 0 0 0 chrX 110510186 110510207 -52089723 + (TC)n Simple_repeat Simple_repeat 2 22 0 436 297 23 14 chrX 110510823 110510979 -52088951 - MER5A DNA MER1_type -21 168 1 748 172 0 0 chrX 110511806 110511928 -52088002 + MER3 DNA MER1_type 11 132 -77 420 299 43 0 chrX 110511938 110512055 -52087875 - L2 LINE L2 0 3313 3192 1344 138 84 27 chrX 110512449 110512747 -52087183 + MER33 DNA MER1_type 5 319 -5 226 230 46 81 chrX 110513255 110513342 -52086588 + L2 LINE L2 3209 3292 -21 1799 109 8 0 chrX 110513481 110513747 -52086183 + L1PA8 LINE L1 5905 6172 0 191 188 0 0 chrX 110515231 110515263 -52084667 - L2 LINE L2 -10 3262 3231 554 272 62 6 chrX 110515669 110515831 -52084099 + MIR SINE MIR 92 262 0 372 123 0 0 chrX 110516191 110516264 -52083666 + (TA)n Simple_repeat Simple_repeat 2 74 0 420 244 82 35 chrX 110516754 110517069 -52082861 - L1MC5 LINE L1 -262 7699 7370 1610 123 5 0 chrX 110517069 110517289 -52082641 - AluSx SINE Alu -91 221 1 229 236 55 0 chrX 110517458 110517513 -52082417 - L1MC4 LINE L1 -1027 7015 6958 885 270 121 20 chrX 110517888 110518292 -52081638 - L1MC4 LINE L1 -1879 5929 5485 183 100 0 0 chrX 110519911 110519941 -52079989 + (TA)n Simple_repeat Simple_repeat 1 30 0 532 271 140 19 chrX 110520323 110520537 -52079393 + MIR SINE MIR 11 250 -12 197 365 28 0 chrX 110520771 110520878 -52079052 + L2 LINE L2 2622 2731 -583 457 305 122 0 chrX 110521195 110521359 -52078571 + MIR3 SINE MIR 16 199 -9 7049 52 49 3 chrX 110521634 110523078 -52076852 - L1PA7 LINE L1 0 6154 4673 6968 83 12 0 chrX 110523078 110524041 -52075889 + L1PA7 LINE L1 3692 4666 -1480 201 338 81 0 chrX 110524680 110524754 -52075176 - MIR SINE MIR -139 123 44 189 0 0 0 chrX 110525182 110525203 -52074727 + (TA)n Simple_repeat Simple_repeat 2 22 0 233 176 286 44 chrX 110525980 110526071 -52073859 - MIR SINE MIR -19 243 131 5496 110 2 2 chrX 110526145 110526953 -52072977 - L1PA16 LINE L1 0 6166 5359 222 209 0 0 chrX 110527228 110527271 -52072659 - L2 LINE L2 0 3313 3271 707 261 50 0 chrX 110527548 110527728 -52072202 + MIR SINE MIR 74 262 0 362 339 18 0 chrX 110527738 110527847 -52072083 - MIR SINE MIR -67 141 31 1773 147 62 0 chrX 110528358 110528630 -52071300 - AluJb SINE Alu -23 289 1 323 95 48 48 chrX 110529146 110529209 -52070721 + L1MB1 LINE L1 6103 6165 -3 2282 90 13 3 chrX 110530580 110530881 -52069049 - AluSx SINE Alu -8 304 1 261 118 0 0 chrX 110530977 110531028 -52068902 + (A)n Simple_repeat Simple_repeat 1 51 0 318 311 123 8 chrX 110531040 110531162 -52068768 + MER5A DNA MER1_type 54 189 0 309 266 0 53 chrX 110532617 110532711 -52067219 + MER5A DNA MER1_type 17 105 -84 243 170 0 0 chrX 110534057 110534104 -52065826 + T-rich Low_complexity Low_complexity 1 47 0 419 148 0 0 chrX 110534133 110534150 -52065780 - L1P5 LINE L1 -470 5681 5665 3394 156 6 2 chrX 110534150 110534700 -52065230 - L1PA15 LINE L1 -1 6164 5613 419 148 0 0 chrX 110534700 110534767 -52065163 - L1P5 LINE L1 -485 5666 5597 * 6041 174 13 4 chrX 110534745 110534920 -52065010 - L1P4 LINE L1 -496 5669 5497 1842 147 10 33 chrX 110534920 110535226 -52064704 - AluSx SINE Alu -13 299 1 6041 174 13 4 chrX 110535226 110536590 -52063340 - L1P4 LINE L1 -668 5497 4119 727 274 52 22 chrX 110538823 110539053 -52060877 + MIR SINE MIR 1 237 -25 194 103 0 26 chrX 110539059 110539098 -52060832 + (TA)n Simple_repeat Simple_repeat 2 39 0 354 225 38 0 chrX 110540237 110540317 -52059613 - MER5B DNA MER1_type 0 178 96 * 583 318 125 14 chrX 110540265 110540633 -52059297 - L3 LINE CR1 -873 704 296 306 194 0 0 chrX 110542056 110542128 -52057802 + T-rich Low_complexity Low_complexity 1 72 0 198 0 0 0 chrX 110542173 110542195 -52057735 + (T)n Simple_repeat Simple_repeat 1 22 0 212 327 36 27 chrX 110542284 110542394 -52057536 + MIR3 SINE MIR 50 160 -48 373 254 24 8 chrX 110543200 110543326 -52056604 - L2 LINE L2 -1472 1842 1715 234 0 0 0 chrX 110544293 110544305 -52055625 + (TG)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chrX 110544305 110544331 -52055599 + (TG)n Simple_repeat Simple_repeat 2 27 0 246 242 0 22 chrX 110544357 110544448 -52055482 - L1MC4 LINE L1 -1339 6703 6615 230 146 42 0 chrX 110544448 110544496 -52055434 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 627 209 61 0 chrX 110544496 110544644 -52055286 - MER2 DNA MER2_type 0 345 189 1088 163 52 0 chrX 110544644 110544816 -52055114 + Tigger3(Golem) DNA MER2_type 1 181 -2848 * 4801 119 54 13 chrX 110544814 110544997 -52054933 + Tigger3(Golem) DNA MER2_type 2141 2315 -714 1960 127 7 19 chrX 110544997 110545325 -52054605 - AluSq SINE Alu 0 313 1 4801 119 54 13 chrX 110545325 110545995 -52053935 + Tigger3(Golem) DNA MER2_type 2315 3029 0 923 129 123 23 chrX 110545995 110546166 -52053764 - MER2 DNA MER2_type -155 190 3 216 0 0 0 chrX 110546166 110546190 -52053740 + (TG)n Simple_repeat Simple_repeat 2 25 0 508 210 60 98 chrX 110546412 110546578 -52053352 + MIR SINE MIR 2 161 -77 279 314 83 127 chrX 110547872 110548088 -52051842 - L2 LINE L2 -11 3261 3037 374 221 106 48 chrX 110548088 110548192 -52051738 + MER81 DNA DNA 2 111 -3 279 314 83 127 chrX 110548192 110548447 -52051483 - L2 LINE L2 -235 3037 2811 2148 118 30 3 chrX 110548635 110548932 -52050998 + AluSc SINE Alu 1 305 -4 371 235 98 0 chrX 110550034 110550166 -52049764 - L1ME4a LINE L1 -14 6107 5963 370 245 19 0 chrX 110550199 110550305 -52049625 + L1ME4a LINE L1 5774 5881 -240 801 235 12 6 chrX 110551522 110551692 -52048238 - MER5B DNA MER1_type 0 178 8 873 190 50 6 chrX 110551737 110551916 -52048014 + MER5A DNA MER1_type 2 188 -1 456 331 46 75 chrX 110552180 110552461 -52047469 + L2 LINE L2 2988 3260 -12 1930 103 77 4 chrX 110552508 110552780 -52047150 + AluSx SINE Alu 1 292 -20 352 271 329 7 chrX 110554328 110554483 -52045447 - MIR SINE MIR -21 241 37 276 247 12 35 chrX 110554910 110554995 -52044935 - MIR3 SINE MIR -2 206 124 239 332 96 73 chrX 110555472 110556117 -52043813 - L2 LINE L2 -10 3262 2580 2067 120 0 28 chrX 110556131 110556469 -52043461 + AluSx SINE Alu 1 330 0 380 338 63 58 chrX 110556789 110557236 -52042694 - L2 LINE L2 -970 2344 1896 301 238 69 10 chrX 110558148 110558249 -52041681 + L1MB8 LINE L1 3079 3185 -2961 25 65 0 0 chrX 110561165 110561211 -52038719 + AT_rich Low_complexity Low_complexity 1 46 0 752 233 18 12 chrX 110562835 110562998 -52036932 + MIR3 SINE MIR 33 196 -12 2412 75 3 0 chrX 110563126 110563420 -52036510 + AluSp SINE Alu 1 295 -18 249 255 0 0 chrX 110565055 110565106 -52034824 - L2 LINE L2 -2 3270 3220 421 122 61 51 chrX 110566548 110566646 -52033284 + L1MD1 LINE L1 6126 6224 -18 23 0 0 0 chrX 110567227 110567250 -52032680 + AT_rich Low_complexity Low_complexity 1 23 0 249 284 157 8 chrX 110569063 110569197 -52030733 + MIR SINE MIR 109 262 0 1003 281 125 17 chrX 110569840 110570541 -52029389 + L2 LINE L2 2534 3313 0 623 345 128 30 chrX 110570541 110571251 -52028679 + L2 LINE L2 1977 2756 -558 535 290 37 57 chrX 110572181 110572426 -52027504 + MIR SINE MIR 11 250 -12 2651 201 44 39 chrX 110572729 110573631 -52026299 + L1MB8 LINE L1 4540 5439 -735 1005 152 22 0 chrX 110573636 110573820 -52026110 - L1MA9 LINE L1 -259 6053 5866 920 168 56 0 chrX 110573804 110574018 -52025912 + L1MA9 LINE L1 6032 6257 -55 * 3311 192 19 12 chrX 110574053 110574797 -52025133 + L1MB8 LINE L1 5423 6171 -7 4446 123 5 67 chrX 110574892 110575029 -52024901 - L1PA16 LINE L1 -2 6164 6020 1709 48 0 15 chrX 110575029 110575235 -52024695 - AluY SINE Alu -11 300 98 4446 123 5 67 chrX 110575235 110575953 -52023977 - L1PA16 LINE L1 -146 6020 5362 * 4818 214 19 4 chrX 110575951 110577162 -52022768 + L1PA16 LINE L1 4117 5345 -801 1569 185 77 0 chrX 110577164 110577451 -52022479 - AluJo SINE Alu -3 309 1 393 367 49 19 chrX 110577538 110577802 -52022128 + L2 LINE L2 2807 3078 -194 1605 250 60 31 chrX 110577904 110578620 -52021310 + L1MDa LINE L1 1465 2201 -4339 792 223 23 82 chrX 110578727 110579032 -52020898 - L1ME1 LINE L1 -52 6114 5828 431 321 30 30 chrX 110579317 110579485 -52020445 + MIR SINE MIR 89 256 -6 9042 93 4 5 chrX 110579510 110581591 -52018339 - L1PA8 LINE L1 -7 6165 4078 323 259 19 37 chrX 110582534 110582642 -52017288 - L2 LINE L2 -208 3064 2959 352 79 0 32 chrX 110583244 110583307 -52016623 + (TGG)n Simple_repeat Simple_repeat 2 62 0 251 54 27 0 chrX 110586574 110586611 -52013319 + (TTA)n Simple_repeat Simple_repeat 3 40 0 857 165 0 0 chrX 110586932 110587065 -52012865 + FRAM SINE Alu 31 163 -13 540 126 0 0 chrX 110587065 110587152 -52012778 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 265 218 81 11 chrX 110591250 110591337 -52008593 + L1MC4 LINE L1 7923 8015 -27 224 289 87 40 chrX 110592469 110592618 -52007312 - L2 LINE L2 -185 3087 2932 2376 85 0 0 chrX 110593348 110593641 -52006289 + AluSq SINE Alu 1 293 -20 217 151 38 0 chrX 110593983 110594036 -52005894 + (TA)n Simple_repeat Simple_repeat 2 56 0 521 277 43 14 chrX 110594195 110594336 -52005594 - MIR3 SINE MIR -9 199 55 1515 213 52 31 chrX 110596066 110596451 -52003479 + L1MB8 LINE L1 5783 6175 -3 27 0 0 0 chrX 110597492 110597519 -52002411 + GC_rich Low_complexity Low_complexity 1 27 0 218 323 213 24 chrX 110598104 110598231 -52001699 + L2 LINE L2 3116 3266 -6 265 277 142 43 chrX 110598416 110598557 -52001373 + MIR SINE MIR 1 155 -107 213 341 12 12 chrX 110598646 110598731 -52001199 + MIR SINE MIR 178 262 0 214 326 35 66 chrX 110599020 110599247 -52000683 + L2 LINE L2 1569 1788 -1526 826 253 5 14 chrX 110600398 110600619 -51999311 + L1MD2 LINE L1 5686 5904 -455 932 115 7 0 chrX 110600734 110600873 -51999057 + L1MA9 LINE L1 6173 6312 0 398 253 11 0 chrX 110601345 110601432 -51998498 + MIR SINE MIR 59 146 -62 826 42 0 0 chrX 110603395 110603491 -51996439 + AluSg/x SINE Alu 211 306 -4 188 261 188 0 chrX 110603521 110603590 -51996340 + MIR SINE MIR 67 148 -114 257 282 0 39 chrX 110603689 110603767 -51996163 + L2 LINE L2 3198 3272 0 185 277 199 43 chrX 110603865 110604006 -51995924 - MIR3 SINE MIR -42 166 4 224 274 63 21 chrX 110605352 110605447 -51994483 - MIR3 SINE MIR -27 181 83 298 246 18 55 chrX 110605584 110605694 -51994236 + MIR SINE MIR 101 206 -56 347 306 187 0 chrX 110605985 110606119 -51993811 - MIR3 SINE MIR -11 197 39 248 236 0 0 chrX 110606490 110606545 -51993385 + (CA)n Simple_repeat Simple_repeat 1 55 0 423 56 0 0 chrX 110607621 110607675 -51992255 + (CTG)n Simple_repeat Simple_repeat 1 54 0 2001 269 291 41 chrX 110609079 110609652 -51990278 - L3 LINE CR1 -4 1573 1144 886 205 33 70 chrX 110609652 110609896 -51990034 - MER106A DNA MER1_type -1 235 1 2001 269 291 41 chrX 110609896 110610581 -51989349 - L3 LINE CR1 -433 1144 1 500 202 18 28 chrX 110610625 110610734 -51989196 - MIR SINE MIR -149 113 6 231 323 0 0 chrX 110610813 110610878 -51989052 - L2 LINE L2 -213 3059 2995 329 289 41 0 chrX 110611107 110611204 -51988726 + MIR SINE MIR 64 164 -98 * 395 242 30 61 chrX 110611203 110611302 -51988628 - L2 LINE L2 -9 3263 3168 316 333 60 89 chrX 110612588 110612936 -51986994 + L2 LINE L2 2921 3258 -14 228 135 0 0 chrX 110613018 110613055 -51986875 + (CA)n Simple_repeat Simple_repeat 1 37 0 226 306 31 62 chrX 110613714 110613874 -51986056 - MIR SINE MIR -45 217 63 291 141 34 0 chrX 110614042 110614105 -51985825 + L1MD2 LINE L1 5683 5751 -412 1993 185 35 20 chrX 110614110 110614510 -51985420 + L1MD2 LINE L1 5951 6356 -3 196 200 53 0 chrX 110614529 110614624 -51985306 + (TA)n Simple_repeat Simple_repeat 1 100 0 235 170 19 0 chrX 110614662 110614715 -51985215 + (TA)n Simple_repeat Simple_repeat 2 55 0 1117 30 0 22 chrX 110614751 110614885 -51985045 + L1PA3 LINE L1 6025 6155 0 898 214 0 0 chrX 110615158 110615312 -51984618 - MER45A DNA AcHobo -1 177 24 476 290 113 21 chrX 110615645 110615831 -51984099 + MIR SINE MIR 9 211 -51 1237 271 45 34 chrX 110616075 110616547 -51983383 + L1MDa LINE L1 54 530 -6010 1680 200 72 44 chrX 110616617 110617116 -51982814 + L1MDa LINE L1 1201 1713 -4827 538 257 44 7 chrX 110617286 110617422 -51982508 - L2 LINE L2 0 3272 3132 196 240 173 78 chrX 110617514 110617625 -51982305 - L2 LINE L2 -1 3312 3176 1084 194 13 48 chrX 110617625 110617852 -51982078 - MER20 DNA MER1_type 0 219 1 196 240 173 78 chrX 110617852 110617919 -51982011 - L2 LINE L2 -137 3176 3117 264 246 70 0 chrX 110618171 110618228 -51981702 + L2 LINE L2 3168 3228 -44 209 306 135 18 chrX 110620877 110620988 -51978942 - L2 LINE L2 0 3272 3149 241 348 19 45 chrX 110621044 110621199 -51978731 - L2 LINE L2 -20 3252 3102 4568 144 9 0 chrX 110622583 110623272 -51976658 - L1MB2 LINE L1 -4 6167 5473 1648 78 41 0 chrX 110623278 110623497 -51976433 - L1MA2 LINE L1 0 6304 6077 1125 184 24 0 chrX 110623497 110623802 -51976128 - L1MB2 LINE L1 -702 5481 5171 553 189 20 72 chrX 110623823 110623976 -51975954 - L1MA8 LINE L1 -5 6286 6142 1833 95 4 8 chrX 110623991 110624234 -51975696 - L1PA7 LINE L1 -4 6150 5909 205 252 99 63 chrX 110624710 110624821 -51975109 + MIR SINE MIR 71 185 -77 816 295 97 43 chrX 110624961 110625557 -51974373 + L2 LINE L2 2629 3272 0 268 261 15 131 chrX 110625563 110625823 -51974107 + L2 LINE L2 2824 3053 -219 180 0 0 0 chrX 110626186 110626206 -51973724 + (T)n Simple_repeat Simple_repeat 1 20 0 291 309 103 22 chrX 110626345 110626481 -51973449 + MIR3 SINE MIR 10 156 -52 520 212 158 11 chrX 110626489 110626648 -51973282 + MER5A DNA MER1_type 4 189 0 313 311 8 17 chrX 110626665 110626784 -51973146 - MER5A DNA MER1_type -28 161 44 236 241 19 0 chrX 110626812 110626866 -51973064 + MIR3 SINE MIR 149 203 -5 23 0 0 0 chrX 110627342 110627365 -51972565 + AT_rich Low_complexity Low_complexity 1 23 0 663 182 64 91 chrX 110628166 110628353 -51971577 - MER5A DNA MER1_type -4 185 4 1437 190 22 0 chrX 110629375 110629649 -51970281 - L1MB2 LINE L1 -3 6168 5889 2297 85 0 0 chrX 110630105 110630417 -51969513 - AluSx SINE Alu 0 312 1 403 239 0 0 chrX 110630866 110630954 -51968976 + MIR3 SINE MIR 120 207 -1 207 0 0 0 chrX 110630967 110630990 -51968940 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2053 111 6 48 chrX 110633702 110634017 -51965913 + AluSx SINE Alu 1 302 -10 660 242 21 67 chrX 110635742 110635952 -51963978 + MIR3 SINE MIR 2 203 -5 243 0 0 0 chrX 110636182 110636209 -51963721 + (TG)n Simple_repeat Simple_repeat 2 28 0 228 250 16 31 chrX 110636679 110636743 -51963187 + MIR3 SINE MIR 110 172 -36 234 107 71 0 chrX 110637221 110637277 -51962653 + (CA)n Simple_repeat Simple_repeat 1 60 0 4426 188 83 33 chrX 110639047 110640275 -51959655 - L1MD2 LINE L1 0 6359 5078 1267 90 12 0 chrX 110640324 110640491 -51959439 - AluSg/x SINE Alu -15 297 129 228 283 333 0 chrX 110640828 110640948 -51958982 + MIR3 SINE MIR 40 199 -9 537 191 28 57 chrX 110641049 110641190 -51958740 - MER58C DNA MER1_type 0 215 79 3222 233 36 29 chrX 110641469 110642293 -51957637 + L1M4 LINE L1 13 842 -5700 493 252 122 39 chrX 110642294 110642548 -51957382 + L1M4 LINE L1 1869 2143 -4503 882 221 82 54 chrX 110642634 110642928 -51957002 - L1MA9 LINE L1 -134 6178 5877 3190 223 41 17 chrX 110642959 110644165 -51955765 + L1M4 LINE L1 2268 3507 -3137 984 161 76 28 chrX 110644158 110644407 -51955523 + L1MB7 LINE L1 5919 6179 -5 * 351 161 0 32 chrX 110644495 110644588 -51955342 + (TA)n Simple_repeat Simple_repeat 1 90 0 360 273 253 20 chrX 110644712 110644862 -51955068 + MIR3 SINE MIR 13 197 -11 23 54 0 0 chrX 110645927 110645964 -51953966 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 110646050 110646072 -51953858 + AT_rich Low_complexity Low_complexity 1 22 0 197 309 12 48 chrX 110646187 110646271 -51953659 + MIR SINE MIR 111 191 -71 2137 185 37 94 chrX 110646794 110647282 -51952648 + L1MC4 LINE L1 7403 7844 -198 2342 60 0 3 chrX 110647282 110647610 -51952320 + AluY SINE Alu 1 327 0 2137 185 37 94 chrX 110647610 110647797 -51952133 + L1MC4 LINE L1 7844 8040 -2 1081 205 24 0 chrX 110648646 110648851 -51951079 + MER63A DNA MER1_type 1 210 0 397 198 66 165 chrX 110648853 110649035 -51950895 + MIR3 SINE MIR 43 206 -2 283 237 13 26 chrX 110650298 110650374 -51949556 - MIR SINE MIR -99 163 89 243 292 6 64 chrX 110650566 110650737 -51949193 + GA-rich Low_complexity Low_complexity 4 164 0 225 234 0 0 chrX 110651102 110651166 -51948764 + GA-rich Low_complexity Low_complexity 1 64 0 181 332 174 34 chrX 110651478 110651713 -51948217 - L2 LINE L2 0 3272 3005 1034 190 34 8 chrX 110651713 110651950 -51947980 + L1MB7 LINE L1 5925 6167 -17 295 236 0 0 chrX 110652043 110652115 -51947815 + L1 LINE L1 3934 4005 -2141 * 2292 37 0 0 chrX 110652111 110652407 -51947523 - L1HS LINE L1 -911 5235 4940 7727 3 0 0 chrX 110652422 110653324 -51946606 + L1HS LINE L1 5254 6155 0 7312 160 14 45 chrX 110653338 110653457 -51946473 + L1PA15 LINE L1 3991 4112 -2053 2344 105 0 0 chrX 110653457 110653761 -51946169 - AluSc SINE Alu -5 304 1 7312 160 14 45 chrX 110653761 110655136 -51944794 + L1PA15 LINE L1 4112 5528 -637 2520 81 0 0 chrX 110655136 110655445 -51944485 + AluSg SINE Alu 1 309 -1 7312 160 14 45 chrX 110655445 110655593 -51944337 + L1PA15 LINE L1 5528 5679 -486 393 22 0 0 chrX 110655593 110655639 -51944291 + (TAA)n Simple_repeat Simple_repeat 3 48 0 7312 160 14 45 chrX 110655639 110656194 -51943736 + L1PA15 LINE L1 5679 6159 -6 644 299 59 67 chrX 110656199 110656587 -51943343 - L2 LINE L2 -365 2949 2565 197 286 0 0 chrX 110657992 110658041 -51941889 - MIR SINE MIR -1 261 213 237 65 0 0 chrX 110658042 110658073 -51941857 + (TC)n Simple_repeat Simple_repeat 2 32 0 246 62 0 0 chrX 110658073 110658105 -51941825 + (CA)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chrX 110658199 110658222 -51941708 + AT_rich Low_complexity Low_complexity 1 23 0 249 305 30 69 chrX 110659365 110659496 -51940434 - MIR SINE MIR -46 216 91 749 257 54 18 chrX 110660421 110660643 -51939287 + MIR SINE MIR 20 249 -13 198 0 0 0 chrX 110660835 110660857 -51939073 + (T)n Simple_repeat Simple_repeat 1 22 0 1336 197 11 9 chrX 110661679 110661942 -51937988 + MIR SINE MIR 2 261 -1 259 304 33 76 chrX 110662613 110662797 -51937133 + MIR SINE MIR 59 234 -28 1015 169 142 48 chrX 110662853 110663148 -51936782 + MER33 DNA MER1_type 2 324 0 618 172 76 13 chrX 110664663 110664820 -51935110 + LTR37A LTR ERV1 1 167 -259 236 322 46 0 chrX 110664833 110664920 -51935010 - MIR SINE MIR -130 132 42 1034 226 6 32 chrX 110665787 110666247 -51933683 + MLT1F LTR MaLR 1 542 0 593 337 90 35 chrX 110666584 110666928 -51933002 - L2 LINE L2 0 3272 2910 208 317 0 33 chrX 110667478 110667538 -51932392 - MER5C DNA MER1_type -262 62 5 341 331 63 16 chrX 110669060 110669187 -51930743 - MIR3 SINE MIR -63 145 13 601 308 67 17 chrX 110671696 110671936 -51927994 - MIR SINE MIR -7 255 4 284 253 53 13 chrX 110671956 110672031 -51927899 - L2 LINE L2 -56 3216 3139 1940 102 3 44 chrX 110672897 110673216 -51926714 + AluSc SINE Alu 1 309 0 379 306 37 0 chrX 110673800 110673908 -51926022 - MIR SINE MIR -60 148 37 323 200 0 12 chrX 110674139 110674219 -51925711 + GA-rich Low_complexity Low_complexity 6 84 0 203 284 236 27 chrX 110675184 110675332 -51924598 - L2 LINE L2 -173 3099 2921 2011 279 148 36 chrX 110676087 110676457 -51923473 + L2 LINE L2 1825 2152 -1162 2656 120 70 2 chrX 110676457 110676858 -51923072 + MSTC LTR MaLR 1 428 0 2011 279 148 36 chrX 110676858 110677347 -51922583 + L2 LINE L2 2152 2780 -534 24369 145 9 21 chrX 110677353 110679571 -51920359 + L1PA8A LINE L1 529 2773 -3673 387 0 0 0 chrX 110679571 110679614 -51920316 + (TA)n Simple_repeat Simple_repeat 1 43 0 24369 145 9 21 chrX 110679614 110680931 -51918999 + L1PA8A LINE L1 2773 4105 -2341 2223 112 0 0 chrX 110680931 110681226 -51918704 + AluSx SINE Alu 1 295 -17 24369 145 9 21 chrX 110681226 110682944 -51916986 + L1PA8A LINE L1 4105 5776 -670 3016 70 21 0 chrX 110682942 110683503 -51916427 - L1PA8A LINE L1 -444 5687 5119 * 188 111 0 0 chrX 110683520 110683547 -51916383 - MIR3 SINE MIR -11 197 171 1586 181 30 53 chrX 110683547 110683984 -51915946 + L1MB4 LINE L1 5753 6179 -1 406 141 12 0 chrX 110683996 110684081 -51915849 + L1MB8 LINE L1 6093 6178 0 265 288 15 0 chrX 110684241 110684307 -51915623 + L2 LINE L2 3185 3251 -62 436 313 25 16 chrX 110685239 110685391 -51914539 - MIR3 SINE MIR -46 162 47 291 54 0 0 chrX 110686097 110686134 -51913796 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 284 170 0 0 chrX 110686412 110686459 -51913471 + MIR3 SINE MIR 151 197 -11 1188 268 87 34 chrX 110687024 110687495 -51912435 - LTR33 LTR ERVL -3 518 23 235 357 48 24 chrX 110687697 110687823 -51912107 - MIR SINE MIR -64 144 16 2323 113 16 40 chrX 110687984 110688357 -51911573 - THE1B LTR MaLR 0 364 1 1699 153 0 4 chrX 110688988 110689256 -51910674 - AluJo SINE Alu -45 267 1 1252 154 4 68 chrX 110689258 110689492 -51910438 + MER20 DNA MER1_type 1 219 0 351 60 0 0 chrX 110690057 110690107 -51909823 + (GA)n Simple_repeat Simple_repeat 2 51 0 340 296 47 47 chrX 110690449 110690618 -51909312 + MIR SINE MIR 48 216 -46 23 0 0 0 chrX 110690831 110690854 -51909076 + AT_rich Low_complexity Low_complexity 1 23 0 202 422 31 23 chrX 110690927 110691055 -51908875 - L2 LINE L2 0 3272 3144 184 238 16 63 chrX 110692510 110692573 -51907357 + L2 LINE L2 3242 3301 -12 244 408 39 21 chrX 110693221 110693454 -51906476 + L3 LINE CR1 123 359 -1218 328 246 61 0 chrX 110693518 110693632 -51906298 - MER117 DNA MER1_type -33 164 44 238 325 24 0 chrX 110693778 110693861 -51906069 - L2 LINE L2 -212 3060 2976 453 185 0 83 chrX 110694060 110694168 -51905762 + AluJo SINE Alu 36 134 -178 352 309 130 13 chrX 110694422 110694607 -51905323 + MIR3 SINE MIR 1 208 0 1839 167 3 13 chrX 110694733 110695039 -51904891 + AluJb SINE Alu 7 309 -3 2196 114 0 3 chrX 110695052 110695359 -51904571 - AluSx SINE Alu -6 306 1 1155 304 62 16 chrX 110695440 110695828 -51904102 + L3 LINE CR1 977 1382 -195 929 284 126 23 chrX 110695995 110697379 -51902551 + L1ME LINE L1 4302 5818 -303 4241 81 17 0 chrX 110697384 110697978 -51901952 + L1MA2 LINE L1 5701 6304 0 808 196 57 34 chrX 110698146 110698355 -51901575 - MER20 DNA MER1_type -5 214 1 291 311 118 37 chrX 110698554 110698689 -51901241 + L3 LINE CR1 1430 1575 -2 411 209 27 135 chrX 110700073 110700221 -51899709 - L2 LINE L2 -1 3312 3181 389 303 133 29 chrX 110701510 110701922 -51898008 + L1ME LINE L1 5318 5772 -392 1553 163 18 25 chrX 110702101 110702296 -51897634 - AluJb SINE Alu 0 315 121 240 59 0 0 chrX 110702296 110702330 -51897600 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1553 163 18 25 chrX 110702330 110702450 -51897480 - AluJb SINE Alu -194 121 2 39 22 0 0 chrX 110702500 110702546 -51897384 + AT_rich Low_complexity Low_complexity 1 46 0 32 0 0 43 chrX 110702556 110702585 -51897345 + AT_rich Low_complexity Low_complexity 1 29 -16 1967 77 60 17 chrX 110702585 110702884 -51897046 - L1MA1 LINE L1 -8 6294 5983 32 0 0 43 chrX 110702884 110702901 -51897029 + AT_rich Low_complexity Low_complexity 29 45 0 290 244 57 16 chrX 110702931 110703054 -51896876 - L1ME4a LINE L1 -63 6058 5931 1233 151 23 32 chrX 110703079 110703298 -51896632 - MER20 DNA MER1_type -2 217 1 278 261 62 0 chrX 110703945 110704010 -51895920 - L2 LINE L2 -10 3262 3194 24 0 0 0 chrX 110706023 110706047 -51893883 + AT_rich Low_complexity Low_complexity 1 24 0 541 67 22 22 chrX 110706075 110706129 -51893801 - MLT2A1 LTR ERVL 0 444 388 294 29 0 0 chrX 110706129 110706164 -51893766 + (CA)n Simple_repeat Simple_repeat 2 36 0 541 67 22 22 chrX 110706164 110706198 -51893732 - MLT2A1 LTR ERVL -55 389 356 300 301 102 34 chrX 110756198 110756374 -51843556 + ERVL LTR ERVL 4585 4772 -992 218 157 20 20 chrX 110756602 110756653 -51843277 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4950 176 18 15 chrX 110756672 110757919 -51842011 + L1MB7 LINE L1 4936 6184 0 1493 230 37 57 chrX 110757893 110758406 -51841524 + L1ME1 LINE L1 5646 6148 -18 * 3650 184 19 76 chrX 110758504 110759402 -51840528 - L1MD2 LINE L1 -11 6231 5385 570 69 0 0 chrX 110759435 110759507 -51840423 - U6 snRNA snRNA -34 73 2 4581 211 34 66 chrX 110759512 110761059 -51838871 - L1MD2 LINE L1 -816 5330 3833 487 234 133 6 chrX 110761273 110761431 -51838499 - MER5B DNA MER1_type 0 178 1 821 284 62 24 chrX 110761546 110761835 -51838095 + MLT1J LTR MaLR 186 485 -26 902 309 15 58 chrX 110762693 110763240 -51836690 + HAL1 LINE L1 1200 1722 -785 317 224 59 12 chrX 110763686 110763771 -51836159 - L2 LINE L2 -5 3267 3179 182 200 22 22 chrX 110763954 110763999 -51835931 - L2 LINE L2 -665 2649 2605 480 297 14 0 chrX 110764155 110764293 -51835637 + MIR SINE MIR 72 211 -51 856 232 104 83 chrX 110764394 110764502 -51835428 - MLT1G LTR MaLR 0 590 486 2402 84 0 3 chrX 110764502 110764810 -51835120 + AluSg SINE Alu 4 310 0 856 232 104 83 chrX 110764810 110765037 -51834893 - MLT1G LTR MaLR -104 486 248 364 237 121 62 chrX 110765045 110765413 -51834517 - LTR48 LTR ERV1 -9 778 261 311 91 0 0 chrX 110765429 110765473 -51834457 + MER72 LTR ERV1 679 722 0 261 330 0 23 chrX 110765588 110765676 -51834254 + MIR SINE MIR 1 86 -176 787 293 112 24 chrX 110765683 110766217 -51833713 - MLT1L LTR MaLR -4 611 1 263 274 126 11 chrX 110766385 110766480 -51833450 - MLT1L LTR MaLR -161 454 349 478 214 36 0 chrX 110766485 110766597 -51833333 + MIR SINE MIR 105 220 -42 4819 157 48 4 chrX 110766738 110767822 -51832108 + L1MB7 LINE L1 5054 6184 0 250 111 0 0 chrX 110768105 110768141 -51831789 - MSTA LTR MaLR -392 36 1 437 193 77 5 chrX 110768143 110768250 -51831680 + L1ME2 LINE L1 5827 5951 -217 2778 77 3 13 chrX 110768250 110768627 -51831303 + THE1C LTR MaLR 3 375 0 437 193 77 5 chrX 110768627 110768645 -51831285 + L1ME2 LINE L1 5951 5966 -202 2372 187 37 29 chrX 110769339 110769884 -51830046 + L1ME2 LINE L1 5564 6112 -52 3808 38 0 0 chrX 110770028 110770480 -51829450 - L1PA3 LINE L1 0 6155 5704 229 44 0 67 chrX 110770480 110770525 -51829405 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1633 193 22 14 chrX 110770525 110770839 -51829091 + L1MC/D LINE L1 5320 5639 -720 2171 150 104 24 chrX 110770839 110771220 -51828710 + LTR54B LTR ERV1 1 427 -71 2011 155 0 0 chrX 110771220 110771517 -51828413 + AluSx SINE Alu 1 297 -15 2171 150 104 24 chrX 110771517 110771596 -51828334 + LTR54B LTR ERV1 427 498 0 1633 193 22 14 chrX 110771596 110771644 -51828286 + L1MC/D LINE L1 5639 5685 -674 1320 259 105 57 chrX 110771644 110772122 -51827808 - MLT1G1 LTR MaLR -94 501 1 26 0 0 0 chrX 110773355 110773381 -51826549 + AT_rich Low_complexity Low_complexity 1 26 0 299 175 0 16 chrX 110774465 110774528 -51825402 + L1MC/D LINE L1 5675 5736 -2259 437 117 117 0 chrX 110774596 110774673 -51825257 + L1MC/D LINE L1 5718 5803 -2192 279 238 36 0 chrX 110774671 110774755 -51825175 + L1MC4 LINE L1 7955 8041 -1 * 468 0 0 0 chrX 110775086 110775138 -51824792 + (A)n Simple_repeat Simple_repeat 1 52 0 1689 201 48 48 chrX 110775535 110775925 -51824005 - L1M4c LINE L1 -3890 2494 2105 1486 173 25 0 chrX 110775925 110776168 -51823762 + AluJo SINE Alu 37 285 -27 453 36 0 0 chrX 110776168 110776223 -51823707 + (CA)n Simple_repeat Simple_repeat 2 56 0 1689 201 48 48 chrX 110776223 110776416 -51823514 - L1M4c LINE L1 -4277 2107 1816 1867 233 62 63 chrX 110776427 110776490 -51823440 - L1M4 LINE L1 -2335 3811 3749 1664 180 26 10 chrX 110776490 110776795 -51823135 - AluJb SINE Alu -2 310 1 1867 233 62 63 chrX 110776795 110777522 -51822408 - L1M4 LINE L1 -2397 3749 3022 2209 115 0 7 chrX 110778202 110778506 -51821424 + AluSx SINE Alu 3 304 -8 474 287 59 35 chrX 110779035 110779289 -51820641 + MIR SINE MIR 2 261 -1 888 269 45 0 chrX 110779463 110779686 -51820244 + MIR SINE MIR 25 257 -5 203 193 18 53 chrX 110780074 110780131 -51819799 + GA-rich Low_complexity Low_complexity 1 55 0 261 193 53 0 chrX 110780345 110780402 -51819528 + MLT1F1 LTR MaLR 4 63 -504 631 54 8 161 chrX 110780403 110780533 -51819397 + L1MA1 LINE L1 6193 6302 0 449 333 21 16 chrX 110781096 110781282 -51818648 - MIR3 SINE MIR -6 202 16 195 277 62 15 chrX 110781286 110781351 -51818579 - MER5A DNA MER1_type 0 189 122 393 195 82 31 chrX 110782002 110782119 -51817811 + MIR3 SINE MIR 30 157 -51 404 306 48 14 chrX 110783164 110783311 -51816619 + MIR3 SINE MIR 38 189 -19 1233 119 64 23 chrX 110783325 110783544 -51816386 - L1PA16 LINE L1 -1 6165 5938 297 130 80 0 chrX 110783722 110783822 -51816108 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 1005 165 53 194 chrX 110783826 110784263 -51815667 - L1ME3A LINE L1 0 6170 5796 2276 112 0 0 chrX 110784293 110784589 -51815341 + AluSx SINE Alu 1 296 -16 23 0 0 0 chrX 110784599 110784622 -51815308 + AT_rich Low_complexity Low_complexity 1 23 0 357 324 85 46 chrX 110784753 110785059 -51814871 - L1ME4a LINE L1 -188 5933 5616 646 323 24 20 chrX 110785127 110785381 -51814549 - MIR SINE MIR -6 256 2 2271 109 3 3 chrX 110786091 110786403 -51813527 + AluSx SINE Alu 1 312 0 992 170 3 99 chrX 110786718 110787001 -51812929 + L1M4 LINE L1 4902 5157 -989 5542 216 25 13 chrX 110787011 110788354 -51811576 + L1MB5 LINE L1 3370 4727 -1419 1966 181 14 0 chrX 110788358 110788718 -51811212 + L1MB5 LINE L1 5802 6166 -8 3062 138 23 14 chrX 110788728 110789372 -51810558 + L1M4 LINE L1 5159 5806 -378 1766 175 55 20 chrX 110789510 110789962 -51809968 + MER110A LTR ERV1 1 468 0 187 419 32 32 chrX 110789998 110790153 -51809777 + L2 LINE L2 3118 3272 0 357 361 74 23 chrX 110790165 110790464 -51809466 - L2 LINE L2 -665 2649 2336 321 269 174 27 chrX 110790508 110790657 -51809273 + MIR3 SINE MIR 23 193 -15 1229 275 133 50 chrX 110791044 110791824 -51808106 - L2 LINE L2 -123 3190 2328 580 77 0 67 chrX 110791824 110791928 -51808002 + L1MB8 LINE L1 6082 6178 0 1229 275 133 50 chrX 110791928 110792060 -51807870 - L2 LINE L2 -985 2328 2208 661 236 67 64 chrX 110792062 110792553 -51807377 - MLT1H LTR MaLR -2 553 20 6102 85 18 12 chrX 110792588 110793869 -51806061 + L1PA13 LINE L1 4873 6163 0 476 227 136 45 chrX 110793875 110794029 -51805901 - L2 LINE L2 -1106 2208 2041 * 558 181 28 125 chrX 110794018 110794162 -51805768 + MIR SINE MIR 35 164 -98 263 299 160 69 chrX 110794222 110794654 -51805276 - L2 LINE L2 -1379 1935 1465 310 231 163 48 chrX 110795090 110795237 -51804693 - MIR SINE MIR -9 253 90 1003 302 77 9 chrX 110796361 110796818 -51803112 + MLT1J LTR MaLR 13 500 -11 352 167 61 0 chrX 110796888 110796954 -51802976 - MER8 DNA MER2_type 0 239 170 * 2805 116 21 2 chrX 110796951 110797382 -51802548 + Tigger2 DNA MER2_type 2280 2718 0 471 264 115 29 chrX 110798261 110798435 -51801495 - MIR SINE MIR -51 211 23 182 156 0 0 chrX 110799470 110799502 -51800428 - L2 LINE L2 0 3272 3241 405 299 6 43 chrX 110799669 110799742 -51800188 - MLT1L LTR MaLR 0 615 541 2309 187 86 4 chrX 110799742 110800208 -51799722 - MLT1D LTR MaLR -1 504 1 405 299 6 43 chrX 110800208 110800298 -51799632 - MLT1L LTR MaLR -74 541 458 990 159 6 12 chrX 110800324 110800487 -51799443 + AluJo SINE Alu 121 282 -30 4611 141 11 42 chrX 110800535 110800897 -51799033 + L1MB3 LINE L1 5320 5691 -492 2347 73 3 17 chrX 110800897 110801199 -51798731 + AluY SINE Alu 1 298 -13 4611 141 11 42 chrX 110801199 110801461 -51798469 + L1MB3 LINE L1 5691 5912 -271 2259 103 3 10 chrX 110801461 110801761 -51798169 - AluSq SINE Alu -15 298 1 4611 141 11 42 chrX 110801761 110802026 -51797904 + L1MB3 LINE L1 5912 6183 0 1002 184 11 0 chrX 110802044 110802218 -51797712 - AluJ SINE Alu -6 306 131 398 46 0 3 chrX 110802220 110802284 -51797646 - L1P LINE L1 -765 5390 5328 6466 30 0 0 chrX 110802285 110803075 -51796855 + L1PA4 LINE L1 5386 6175 0 886 137 0 0 chrX 110803078 110803202 -51796728 - AluJ SINE Alu -178 124 1 202 364 0 85 chrX 110803829 110803958 -51795972 + MER5A DNA MER1_type 47 164 -25 201 277 62 15 chrX 110803920 110803985 -51795945 - MER5A DNA MER1_type -115 74 7 * 203 386 68 58 chrX 110803991 110804198 -51795732 - L2 LINE L2 -30 3242 3034 231 336 10 19 chrX 110804795 110804899 -51795031 - L2 LINE L2 -527 2787 2685 352 261 233 0 chrX 110805168 110805332 -51794598 + MIR SINE MIR 52 255 -7 2160 113 3 0 chrX 110806278 110806569 -51793361 - AluSp SINE Alu -1 312 21 1642 189 26 10 chrX 110806615 110806921 -51793009 + AluJo SINE Alu 1 311 -1 251 321 142 0 chrX 110807071 110807289 -51792641 - L3b LINE CR1 -157 1426 1178 2508 107 3 32 chrX 110807381 110807756 -51792174 + THE1B LTR MaLR 1 364 0 387 0 0 0 chrX 110807998 110808041 -51791889 + (TG)n Simple_repeat Simple_repeat 2 44 0 332 281 84 6 chrX 110808054 110808232 -51791698 - L1ME4a LINE L1 -203 5918 5727 2724 147 17 7 chrX 110808241 110808663 -51791267 - MSTB LTR MaLR 0 426 1 8005 187 35 21 chrX 110808668 110810282 -51789648 - MSTB-int LTR MaLR -14 1637 1 2941 126 12 0 chrX 110810282 110810703 -51789227 - MSTB LTR MaLR 0 426 1 302 225 56 14 chrX 110810703 110810774 -51789156 - L1ME4a LINE L1 -399 5722 5649 311 314 147 13 chrX 110812885 110813041 -51786889 - MIR SINE MIR -66 196 20 191 298 40 28 chrX 110813042 110813200 -51786730 + L2 LINE L2 2752 2907 -365 10198 122 55 9 chrX 110813209 110813662 -51786268 - Tigger1 DNA MER2_type 0 2418 1987 1281 143 5 5 chrX 110813662 110813885 -51786045 + L1MA4A LINE L1 6076 6298 -5 10198 122 55 9 chrX 110813885 110815120 -51784810 - Tigger1 DNA MER2_type -431 1987 653 1416 134 82 74 chrX 110815120 110815286 -51784644 - THE1B LTR MaLR 0 364 201 3740 61 6 8 chrX 110815286 110815780 -51784150 + L1PA8 LINE L1 5677 6169 -3 1416 134 82 74 chrX 110815780 110816034 -51783896 - THE1B LTR MaLR -163 201 1 * 4058 134 23 1 chrX 110816034 110816682 -51783248 - Tigger1 DNA MER2_type -1755 663 2 210 196 0 43 chrX 110816735 110816781 -51783149 + L2 LINE L2 3008 3051 -221 1656 183 16 22 chrX 110817289 110817660 -51782270 - L1MA6 LINE L1 -6 6294 5926 3152 202 7 17 chrX 110817660 110818411 -51781519 - L1ME4a LINE L1 -891 5255 4513 307 261 11 23 chrX 110818412 110818500 -51781430 + MIR SINE MIR 90 176 -86 914 286 28 20 chrX 110818745 110819000 -51780930 + MIR SINE MIR 6 262 0 21 0 0 0 chrX 110820179 110820200 -51779730 + AT_rich Low_complexity Low_complexity 1 21 0 365 356 22 50 chrX 110821645 110821825 -51778105 + MER5B DNA MER1_type 4 178 0 456 229 125 21 chrX 110821845 110821989 -51777941 - MIR SINE MIR -73 189 31 6418 169 10 5 chrX 110822275 110823568 -51776362 - L1 LINE L1 -757 5389 4090 560 270 36 7 chrX 110823589 110823726 -51776204 - MIR3 SINE MIR -49 159 19 209 217 33 17 chrX 110823848 110823908 -51776022 - MIR SINE MIR 0 262 202 259 277 0 116 chrX 110823997 110824065 -51775865 + L2 LINE L2 2532 2574 -740 1983 171 63 5 chrX 110824065 110824479 -51775451 - L1MB7 LINE L1 0 6184 5747 259 277 0 116 chrX 110824479 110824565 -51775365 + L2 LINE L2 2574 2668 -646 227 254 17 0 chrX 110824917 110824976 -51774954 + CT-rich Low_complexity Low_complexity 2 61 0 777 180 11 6 chrX 110826075 110826253 -51773677 + CT-rich Low_complexity Low_complexity 1 179 0 223 240 0 0 chrX 110826373 110826423 -51773507 - L2 LINE L2 -8 3305 3256 259 360 0 0 chrX 110826596 110826682 -51773248 - L2 LINE L2 -1 3271 3186 675 207 55 0 chrX 110826817 110826962 -51772968 + MER58B DNA MER1_type 189 341 0 23 0 0 0 chrX 110827183 110827206 -51772724 + AT_rich Low_complexity Low_complexity 1 23 0 2096 109 7 23 chrX 110827206 110827509 -51772421 + AluSg SINE Alu 13 310 0 28 0 0 0 chrX 110828966 110828994 -51770936 + AT_rich Low_complexity Low_complexity 1 28 0 571 304 46 0 chrX 110829396 110829633 -51770297 - L1M4 LINE L1 -1014 5132 4885 371 245 43 58 chrX 110829742 110829881 -51770049 + MIR SINE MIR 79 215 -47 338 342 18 9 chrX 110829901 110830015 -51769915 - MIR3 SINE MIR -1 207 93 214 207 0 35 chrX 110831049 110831107 -51768823 + GA-rich Low_complexity Low_complexity 3 58 0 443 160 154 41 chrX 110831147 110831316 -51768614 - MER53 DNA DNA 0 189 2 406 266 79 68 chrX 110831559 110831834 -51768096 - MLT1J LTR MaLR 0 615 224 245 292 0 15 chrX 110831984 110832049 -51767881 - MLT1J LTR MaLR -447 64 1 313 311 60 60 chrX 110833118 110833285 -51766645 + L2 LINE L2 2917 3083 -189 2178 132 0 3 chrX 110833626 110833936 -51765994 + AluSx SINE Alu 1 309 -3 251 287 66 88 chrX 110834716 110834852 -51765078 + MIR SINE MIR 48 180 -82 712 267 109 0 chrX 110835378 110835599 -51764331 - MIR SINE MIR 0 262 18 442 337 71 10 chrX 110835624 110835759 -51764171 - MIR SINE MIR -33 229 76 614 232 0 0 chrX 110835759 110836033 -51763897 + FLAM_C SINE Alu 3 276 0 442 337 71 10 chrX 110836033 110836092 -51763838 - MIR SINE MIR -186 76 22 1910 132 84 0 chrX 110836125 110836458 -51763472 - MER46B DNA MER2_type 0 236 1 1827 175 3 16 chrX 110837010 110837325 -51762605 - AluJo SINE Alu -1 311 1 335 253 66 82 chrX 110837993 110838077 -51761853 + L1MC4a LINE L1 5616 5700 -2108 539 252 9 0 chrX 110838077 110838188 -51761742 + MER81 DNA DNA 1 112 -2 335 253 66 82 chrX 110838188 110838408 -51761522 + L1MC4a LINE L1 5700 5915 -1893 2572 7 0 0 chrX 110838467 110838783 -51761147 - AluYa5 SINE Alu 0 316 1 239 252 88 31 chrX 110839384 110839527 -51760403 + L1ME4a LINE L1 5954 6108 -13 950 18 0 0 chrX 110839527 110839641 -51760289 - L1PA4 LINE L1 0 6155 6042 239 252 88 31 chrX 110839641 110839656 -51760274 + L1ME4a LINE L1 6108 6121 0 278 244 143 56 chrX 110839886 110840152 -51759778 + L1ME4a LINE L1 5737 6025 -96 407 243 104 12 chrX 110840264 110840437 -51759493 + L1ME3A LINE L1 5760 5948 -222 297 0 0 0 chrX 110840756 110840789 -51759141 + (CA)n Simple_repeat Simple_repeat 2 34 0 280 231 77 77 chrX 110842111 110842202 -51757728 + L2 LINE L2 3170 3260 -12 337 233 94 89 chrX 110842307 110842487 -51757443 - HAL1 LINE L1 -7 2500 2320 1315 273 109 15 chrX 110842726 110843912 -51756018 - HAL1 LINE L1 -354 2153 775 372 290 48 40 chrX 110844228 110844352 -51755578 - HAL1 LINE L1 -2310 197 73 2002 136 17 0 chrX 110844595 110844882 -51755048 - AluSx SINE Alu -20 292 1 369 274 137 8 chrX 110845009 110845133 -51754797 + MER5A DNA MER1_type 50 189 0 225 0 0 0 chrX 110845531 110845556 -51754374 + (A)n Simple_repeat Simple_repeat 1 25 0 541 240 8 23 chrX 110845843 110845972 -51753958 + MIR SINE MIR 11 137 -125 * 557 320 85 88 chrX 110845962 110846234 -51753696 + L2 LINE L2 2886 3158 -114 870 205 90 20 chrX 110846234 110846434 -51753496 + MER58C DNA MER1_type 2 215 0 557 320 85 88 chrX 110846434 110846549 -51753381 + L2 LINE L2 3158 3272 0 404 313 56 7 chrX 110847899 110848043 -51751887 - MIR SINE MIR -108 154 4 575 271 138 14 chrX 110848808 110849018 -51750912 + MIR SINE MIR 20 255 -7 326 275 0 0 chrX 110850500 110850569 -51749361 + L2 LINE L2 3242 3310 -3 296 286 19 29 chrX 110851131 110851236 -51748694 + CT-rich Low_complexity Low_complexity 5 108 0 198 0 0 0 chrX 110852788 110852810 -51747120 + (TG)n Simple_repeat Simple_repeat 2 23 0 492 314 6 6 chrX 110853433 110853608 -51746322 + MER5B DNA MER1_type 3 177 -1 340 262 38 104 chrX 110853616 110853799 -51746131 - MER5A DNA MER1_type -18 171 1 1414 220 116 12 chrX 110853843 110854266 -51745664 - MLT1C LTR MaLR 0 467 1 217 320 13 40 chrX 110854368 110854443 -51745487 - MER5A DNA MER1_type -7 182 110 220 255 0 39 chrX 110855261 110855312 -51744618 - MER5B DNA MER1_type 0 178 130 268 254 17 0 chrX 110855589 110855648 -51744282 + MER5B DNA MER1_type 58 117 -61 * 299 296 19 37 chrX 110855642 110855750 -51744180 - MER5A DNA MER1_type -63 126 21 359 158 13 13 chrX 110859677 110859753 -51740177 - MER116 DNA Mariner -4 76 1 1789 134 42 51 chrX 110860587 110860900 -51739030 - AluJb SINE Alu -2 310 1 315 271 102 62 chrX 110860939 110861116 -51738814 - MIR SINE MIR -71 191 8 198 103 0 0 chrX 110861931 110861960 -51737970 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 555 221 0 0 chrX 110862140 110862267 -51737663 + (TA)n Simple_repeat Simple_repeat 1 127 0 1011 280 131 22 chrX 110862372 110862903 -51737027 - L2 LINE L2 -438 2876 2231 8960 140 11 9 chrX 110863311 110865896 -51734034 + L1MA2 LINE L1 3714 6304 0 404 303 80 112 chrX 110866528 110866818 -51733112 + L3 LINE CR1 1205 1503 -74 704 290 35 12 chrX 110866818 110867073 -51732857 - MIR SINE MIR 0 262 2 404 303 80 112 chrX 110867073 110867139 -51732791 + L3 LINE CR1 1503 1551 -26 2538 59 0 0 chrX 110867139 110867444 -51732486 - AluY SINE Alu -6 305 1 404 303 80 112 chrX 110867444 110867462 -51732468 + L3 LINE CR1 1551 1568 -9 372 296 17 11 chrX 110867467 110867646 -51732284 + (TA)n Simple_repeat Simple_repeat 1 180 0 1128 241 83 41 chrX 110868214 110868650 -51731280 + MER110A LTR ERV1 3 456 -12 416 233 67 92 chrX 110868815 110868929 -51731001 - L1MEc LINE L1 -3791 2424 2309 1632 181 7 7 chrX 110868929 110869211 -51730719 - AluJo SINE Alu -26 286 5 416 233 67 92 chrX 110869211 110869491 -51730439 - L1MEc LINE L1 -3906 2309 2069 25 31 0 0 chrX 110869659 110869691 -51730239 + AT_rich Low_complexity Low_complexity 1 32 0 284 182 52 26 chrX 110869693 110869770 -51730160 + L1ME2 LINE L1 5851 5929 -235 961 199 18 9 chrX 110869770 110869998 -51729932 + MER33 DNA MER1_type 1 221 -86 4144 148 11 5 chrX 110869998 110870736 -51729194 - L1MA4 LINE L1 0 6300 5559 235 128 26 141 chrX 110870740 110870818 -51729112 - L1MA4 LINE L1 -727 5573 5505 4972 190 24 7 chrX 110870818 110872331 -51727599 - L1 LINE L1 -2701 3627 6 446 154 0 103 chrX 110872343 110872460 -51727470 + MER33 DNA MER1_type 258 362 -1 511 260 23 28 chrX 110872481 110872699 -51727231 + L1ME2 LINE L1 5952 6170 0 230 280 40 10 chrX 110872822 110872922 -51727008 + L1MC4 LINE L1 7923 8025 -17 7602 248 48 15 chrX 110872967 110876415 -51723515 + L1MEc LINE L1 20 3542 -2673 252 122 0 0 chrX 110876421 110876462 -51723468 + (TG)n Simple_repeat Simple_repeat 1 41 0 346 258 10 0 chrX 110876468 110876565 -51723365 + L1MEc LINE L1 3546 3643 -2572 848 217 118 10 chrX 110876566 110876769 -51723161 + AluJo SINE Alu 84 308 -4 551 188 0 0 chrX 110876769 110876881 -51723049 + L1MEc LINE L1 3641 3752 -2463 4124 113 70 57 chrX 110876881 110877641 -51722289 + LTR1 LTR ERV1 16 785 0 5442 206 59 41 chrX 110877645 110879376 -51720554 + L1MEc LINE L1 3794 5559 -743 269 254 77 23 chrX 110879384 110879514 -51720416 + L1MA10 LINE L1 6175 6311 -23 425 210 25 0 chrX 110879532 110879613 -51720317 - HAL1 LINE L1 -1623 884 802 266 316 127 74 chrX 110879690 110880083 -51719847 + L2 LINE L2 2857 3270 -2 2412 138 76 15 chrX 110880474 110881014 -51718916 - MER4E LTR ERV1 0 766 32 2123 119 50 11 chrX 110881014 110881376 -51718554 - MER51B LTR ERV1 -1 376 1 2412 138 76 15 chrX 110881376 110881411 -51718519 - MER4E LTR ERV1 -734 32 1 822 188 91 0 chrX 110881469 110881645 -51718285 - LTR47A LTR ERVL 0 452 261 3356 60 0 9 chrX 110881706 110882158 -51717772 + LTR7 LTR ERV1 1 448 -2 20487 89 57 31 chrX 110882160 110885367 -51714563 + HERVH LTR ERV1 1 3290 -4423 3442 109 0 6 chrX 110885357 110885862 -51714068 + HERVH LTR ERV1 3492 3993 -3720 * 4307 149 1 1 chrX 110885864 110886526 -51713404 + HERVH LTR ERV1 4488 5149 -2564 1403 130 19 0 chrX 110886527 110886743 -51713187 + HERVH LTR ERV1 5600 5819 -1894 * 2442 92 45 13 chrX 110886741 110887121 -51712809 + HERVH LTR ERV1 7322 7713 0 3303 69 0 9 chrX 110887121 110887573 -51712357 + LTR7 LTR ERV1 1 448 -2 1800 255 62 24 chrX 110889072 110889565 -51710365 + L2 LINE L2 2394 2927 -386 2695 166 70 19 chrX 110889565 110890095 -51709835 + MER89 LTR ERV1 1 557 -2 1800 255 62 24 chrX 110890095 110890245 -51709685 + L2 LINE L2 2927 3070 -243 189 0 0 0 chrX 111090523 111090544 -51509386 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 636 299 43 11 chrX 111090635 111090819 -51509111 - MIR3 SINE MIR -17 191 2 418 103 0 0 chrX 111090869 111090927 -51509003 + Ricksha DNA DNA 9 66 -1980 766 166 0 48 chrX 111090928 111091073 -51508857 + FLAM_C SINE Alu 2 139 -4 1346 116 27 12 chrX 111091074 111091332 -51508598 - Ricksha DNA DNA -61 2793 2532 2034 91 0 4 chrX 111091332 111091595 -51508335 + AluSq SINE Alu 37 298 -15 1477 159 0 59 chrX 111091600 111091703 -51508227 - Ricksha DNA DNA -382 2864 2756 186 43 0 0 chrX 111091703 111091726 -51508204 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1477 159 0 59 chrX 111091726 111091942 -51507988 - Ricksha DNA DNA -490 2756 2564 618 14 0 0 chrX 111091955 111092026 -51507904 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 2419 200 5 25 chrX 111093625 111094216 -51505714 - L1M4 LINE L1 -1558 4588 4010 * 2623 244 48 25 chrX 111094209 111094957 -51504973 - L1MDa LINE L1 -4164 2557 1631 1604 130 19 10 chrX 111094957 111095264 -51504666 - L1MA4 LINE L1 -1 6299 5990 2623 244 48 25 chrX 111095264 111095660 -51504270 - L1MDa LINE L1 -5090 1631 1246 1831 190 8 14 chrX 111096042 111096411 -51503519 + MLT1A2 LTR MaLR 1 367 -7 325 342 59 71 chrX 111096703 111097041 -51502889 - L2 LINE L2 -221 3051 2710 4669 185 19 7 chrX 111097733 111098702 -51501228 - L1MD1 LINE L1 -9 6233 5254 1108 137 5 5 chrX 111098709 111098906 -51501024 - L1M2 LINE L1 -775 5516 5320 622 112 21 56 chrX 111098905 111099048 -51500882 + L1M LINE L1 5271 5408 -883 * 1802 231 63 66 chrX 111099070 111099718 -51500212 - L1MDa LINE L1 -5879 661 16 448 218 21 154 chrX 111100030 111100218 -51499712 + L2 LINE L2 3138 3300 -13 180 77 0 0 chrX 111100218 111100244 -51499686 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 406 345 42 12 chrX 111100245 111100413 -51499517 + MIR3 SINE MIR 33 205 -3 319 300 0 0 chrX 111100446 111100526 -51499404 + (TCCA)n Simple_repeat Simple_repeat 2 81 0 187 209 93 0 chrX 111100526 111100537 -51499393 - L2 LINE L2 0 3313 3267 206 156 0 0 chrX 111100537 111100569 -51499361 - MIR SINE MIR -9 253 222 314 270 40 141 chrX 111100709 111100827 -51499103 - L2 LINE L2 -248 3024 2938 2479 64 0 3 chrX 111100827 111101124 -51498806 + AluY SINE Alu 6 301 -10 314 270 40 141 chrX 111101124 111101256 -51498674 - L2 LINE L2 -334 2938 2794 797 284 30 13 chrX 111101799 111102031 -51497899 - MIR SINE MIR -26 236 1 569 165 0 152 chrX 111102133 111102297 -51497633 + L2 LINE L2 3175 3313 0 2211 129 22 8 chrX 111102785 111103149 -51496781 - THE1C LTR MaLR 0 375 7 4669 211 33 18 chrX 111103578 111103779 -51496151 - L1MD2 LINE L1 -3 6356 6159 300 27 0 0 chrX 111103779 111103816 -51496114 + (TG)n Simple_repeat Simple_repeat 2 38 0 4669 211 33 18 chrX 111103816 111104347 -51495583 - L1MD2 LINE L1 -200 6159 5637 1907 98 0 0 chrX 111104347 111104630 -51495300 - AluSx SINE Alu 0 329 47 4669 211 33 18 chrX 111104630 111105864 -51494066 - L1MD2 LINE L1 -722 5637 4357 5834 99 31 0 chrX 111105865 111106765 -51493165 + L1MA1 LINE L1 5366 6293 -9 315 104 0 0 chrX 111107422 111107470 -51492460 + (CA)n Simple_repeat Simple_repeat 2 49 0 2073 266 68 44 chrX 111108197 111109021 -51490909 + L2 LINE L2 1907 2750 -564 235 299 29 58 chrX 111109111 111109248 -51490682 + L2 LINE L2 3014 3146 -167 9363 58 2 2 chrX 111110730 111111939 -51487991 - HERVL LTR ERVL -1412 4242 3034 325 87 0 0 chrX 111111948 111111994 -51487936 - MLT2A2 LTR ERVL -405 48 3 837 268 4 31 chrX 111112043 111112271 -51487659 + MIR SINE MIR 7 228 -34 264 273 13 39 chrX 111113468 111113545 -51486385 + MIR SINE MIR 1 75 -187 501 249 134 53 chrX 111113746 111113910 -51486020 + MIR SINE MIR 11 197 -65 2531 42 3 3 chrX 111113910 111114221 -51485709 + AluY SINE Alu 1 311 0 501 249 134 53 chrX 111114221 111114265 -51485665 + MIR SINE MIR 197 236 -26 223 347 42 0 chrX 111114301 111114396 -51485534 - L3 LINE CR1 -344 1233 1135 199 261 0 0 chrX 111114900 111114946 -51484984 + L3 LINE CR1 708 753 -824 500 303 23 0 chrX 111115067 111115199 -51484731 + MIR SINE MIR 109 243 -19 294 333 0 11 chrX 111115253 111115340 -51484590 + L3 LINE CR1 1011 1096 -481 1140 163 18 9 chrX 111115429 111115650 -51484280 - L1MB3 LINE L1 -2 6181 5959 4291 181 36 14 chrX 111115655 111116494 -51483436 - L1MA10 LINE L1 0 6334 5472 198 0 0 0 chrX 111116494 111116516 -51483414 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4291 181 36 14 chrX 111116516 111116589 -51483341 - L1MA10 LINE L1 -862 5472 5402 2428 90 0 0 chrX 111116592 111116903 -51483027 - AluY SINE Alu 0 311 1 2409 199 13 33 chrX 111116938 111117757 -51482173 - L1MB3 LINE L1 -1 6299 5513 286 189 0 0 chrX 111117769 111117822 -51482108 + Charlie8 DNA MER1_type 61 113 -2304 21 36 0 0 chrX 111117890 111117918 -51482012 + AT_rich Low_complexity Low_complexity 1 28 0 391 357 38 22 chrX 111119265 111119450 -51480480 + MIR SINE MIR 18 205 -57 1469 246 58 48 chrX 111120965 111121531 -51478399 + Charlie7 DNA MER1_type 111 682 -1930 4115 111 94 0 chrX 111122171 111122838 -51477092 - THE1C-int LTR MaLR -848 732 3 1983 133 53 19 chrX 111122842 111123203 -51476727 - THE1C LTR MaLR -2 373 1 884 270 48 18 chrX 111123203 111123592 -51476338 - MLT1K LTR MaLR -86 502 32 1585 184 0 48 chrX 111124251 111124566 -51475364 + AluJo SINE Alu 1 300 -12 456 358 108 31 chrX 111125468 111125893 -51474037 - L3b LINE CR1 -22 1561 1104 1901 133 11 0 chrX 111126121 111126444 -51473486 - AluSx SINE Alu 0 336 11 230 245 38 0 chrX 111126737 111126790 -51473140 - L2 LINE L2 -2 3270 3216 * 1009 286 0 4 chrX 111126760 111126991 -51472939 - MIR SINE MIR -21 241 12 463 304 22 22 chrX 111127463 111127598 -51472332 + MER5A DNA MER1_type 55 189 0 734 253 46 0 chrX 111127693 111127887 -51472043 + MER63A DNA MER1_type 1 203 -7 209 322 0 0 chrX 111127965 111128024 -51471906 - MIR SINE MIR -130 78 20 288 408 0 0 chrX 111128032 111128162 -51471768 + L2 LINE L2 2923 3052 -220 416 333 151 0 chrX 111128306 111128525 -51471405 + MIR SINE MIR 11 262 0 999 101 87 0 chrX 111128603 111128843 -51471087 + AluSg/x SINE Alu 135 386 0 2002 156 66 3 chrX 111130240 111130632 -51469298 - L1MA9 LINE L1 -24 6288 5872 303 294 0 0 chrX 111130994 111131062 -51468868 - L2 LINE L2 -2 3270 3203 804 218 123 14 chrX 111131079 111131290 -51468640 - MIR SINE MIR 0 262 29 697 110 94 0 chrX 111131372 111131499 -51468431 + MER30 DNA MER1_type 1 139 -91 7495 51 15 0 chrX 111131499 111132473 -51467457 - L1P LINE L1 -5151 995 7 7538 24 8 0 chrX 111132477 111133550 -51466380 + L1PA4 LINE L1 5076 6155 0 616 322 0 35 chrX 111133595 111133769 -51466161 - MIR SINE MIR -93 169 2 381 284 88 5 chrX 111134030 111134147 -51465783 + MIR SINE MIR 35 142 -66 401 314 58 29 chrX 111135479 111135651 -51464279 + MIR SINE MIR 73 249 -13 2357 74 0 3 chrX 111135725 111136011 -51463919 + AluY SINE Alu 1 287 -24 207 0 0 0 chrX 111136011 111136034 -51463896 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 405 306 33 0 chrX 111138036 111138157 -51461773 + MIR SINE MIR 66 190 -72 518 141 8 0 chrX 111138203 111138331 -51461599 + (TA)n Simple_repeat Simple_repeat 1 129 0 971 152 167 0 chrX 111188502 111188706 -51411224 - L1MA3 LINE L1 -94 6211 5974 910 286 132 42 chrX 111191463 111191918 -51408012 - L2 LINE L2 -1 3312 2817 469 254 27 0 chrX 111192043 111192153 -51407777 - MER81 DNA DNA 0 114 2 874 317 60 56 chrX 111193959 111194426 -51405504 - L2 LINE L2 0 3272 2804 316 288 98 23 chrX 111195203 111195335 -51404595 + MIR3 SINE MIR 3 144 -64 789 324 99 33 chrX 111196700 111197064 -51402866 - L2 LINE L2 -5 3267 2880 747 341 48 6 chrX 111197128 111197439 -51402491 - L2 LINE L2 -556 2758 2435 913 181 41 63 chrX 111197557 111197778 -51402152 + MER20 DNA MER1_type 4 219 0 222 37 0 0 chrX 111198605 111198632 -51401298 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1437 249 212 17 chrX 111198715 111199289 -51400641 - L2 LINE L2 -5 3308 2109 598 298 52 32 chrX 111200186 111200438 -51399492 + Charlie2 DNA MER1_type 4 260 -2522 1105 181 55 8 chrX 111200519 111200756 -51399174 + Charlie2b DNA MER1_type 1199 1446 -1336 1044 215 42 0 chrX 111200886 111201146 -51398784 - L1MCc LINE L1 -6136 287 17 847 260 107 14 chrX 111201155 111201640 -51398290 - L1ME LINE L1 -470 5700 5170 854 220 113 55 chrX 111201688 111201739 -51398191 - L1ME1 LINE L1 -23 6143 6096 204 40 0 0 chrX 111201739 111201764 -51398166 + (TA)n Simple_repeat Simple_repeat 2 26 0 854 220 113 55 chrX 111201764 111202039 -51397891 - L1ME1 LINE L1 -70 6096 5798 1557 248 69 20 chrX 111202084 111202777 -51397153 - L1ME LINE L1 -1005 5141 4415 288 311 13 33 chrX 111202793 111202944 -51396986 + LTR16A LTR ERVL 17 164 -286 322 80 0 20 chrX 111203005 111203055 -51396875 - MER53 DNA DNA -2 187 139 2373 269 92 26 chrX 111203089 111203847 -51396083 - L1M3c LINE L1 -5329 812 5 628 257 7 0 chrX 111203847 111203995 -51395935 + MER58B DNA MER1_type 193 341 0 318 284 0 46 chrX 111204003 111204112 -51395818 + HERVL18 LTR ERVL 1660 1763 -3233 845 164 46 0 chrX 111204113 111204265 -51395665 + MER20 DNA MER1_type 61 219 0 661 255 81 34 chrX 111204265 111204500 -51395430 + HERVL18 LTR ERVL 1861 2106 -2890 2617 345 65 45 chrX 111204507 111205279 -51394651 + HERVL18 LTR ERVL 2260 3015 -2749 2240 173 37 5 chrX 111205279 111205684 -51394246 - MER47B DNA MER2_type 0 418 1 2617 345 65 45 chrX 111205684 111207444 -51392486 + HERVL18 LTR ERVL 3015 4844 -920 439 450 46 18 chrX 111207483 111207872 -51392058 - L1ME LINE L1 -1907 4239 3840 1312 221 38 49 chrX 111207898 111208211 -51391719 - L1ME1 LINE L1 -17 6149 5841 2325 73 0 20 chrX 111208211 111208512 -51391418 - AluY SINE Alu -16 295 1 1312 221 38 49 chrX 111208512 111208647 -51391283 - L1ME1 LINE L1 -325 5841 5706 21 0 0 0 chrX 111211250 111211271 -51388659 + AT_rich Low_complexity Low_complexity 1 21 0 601 92 41 0 chrX 111211639 111211737 -51388193 + L1PA16 LINE L1 5725 5826 -340 257 390 38 0 chrX 111213218 111213323 -51386607 - L2 LINE L2 0 3272 3164 10318 42 0 12 chrX 111213347 111215396 -51384534 + L1PA5 LINE L1 4114 6154 0 1113 195 5 0 chrX 111215630 111215845 -51384085 - L1MA9 LINE L1 -294 6018 5803 878 184 36 52 chrX 111215836 111216086 -51383844 + L1MA9 LINE L1 6045 6290 -22 * 218 306 0 0 chrX 111216612 111216674 -51383256 - MIR SINE MIR 0 262 201 227 209 0 0 chrX 111216720 111216763 -51383167 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 218 303 59 67 chrX 111217035 111217154 -51382776 + L2 LINE L2 3182 3299 -14 205 267 44 96 chrX 111217382 111217517 -51382413 + MIR SINE MIR 106 233 -29 283 266 0 16 chrX 111217927 111217991 -51381939 + C-rich Low_complexity Low_complexity 2 64 0 298 282 29 0 chrX 111218278 111218381 -51381549 + HERVL18 LTR ERVL 4101 4206 -1841 216 135 0 0 chrX 111219026 111219063 -51380867 + (TG)n Simple_repeat Simple_repeat 2 38 0 218 284 0 0 chrX 111219808 111219882 -51380048 + GA-rich Low_complexity Low_complexity 1 74 0 213 346 115 8 chrX 111220189 111220319 -51379611 - MIR3 SINE MIR -1 207 64 1588 169 169 32 chrX 111221079 111221487 -51378443 + MER31B LTR ERV1 1 464 -2 254 343 98 10 chrX 111221524 111221626 -51378304 - L3 LINE CR1 -63 1514 1404 2313 83 7 10 chrX 111221723 111222023 -51377907 - AluSc SINE Alu -10 299 1 180 346 0 0 chrX 111222082 111222134 -51377796 - L2 LINE L2 -303 2969 2918 1193 202 88 23 chrX 111222162 111222549 -51377381 - LTR37A LTR ERV1 0 426 15 324 316 274 8 chrX 111222564 111222798 -51377132 - L2 LINE L2 -403 2911 2616 509 284 142 6 chrX 111222801 111222984 -51376946 + MIR SINE MIR 49 256 -6 207 305 57 38 chrX 111223007 111223112 -51376818 - L3 LINE CR1 -178 1399 1293 22706 27 0 1 chrX 111223212 111226058 -51373872 + L1P LINE L1 1766 4609 -1537 683 268 102 30 chrX 111226331 111226566 -51373364 + MIR SINE MIR 6 257 -5 189 74 0 0 chrX 111226946 111226973 -51372957 + (TG)n Simple_repeat Simple_repeat 2 28 0 288 0 0 0 chrX 111228462 111228494 -51371436 + (CA)n Simple_repeat Simple_repeat 2 33 0 264 267 13 0 chrX 111230049 111230124 -51369806 + MIR SINE MIR 184 259 -3 1157 130 0 19 chrX 111230781 111230996 -51368934 - L1MA2 LINE L1 -47 6257 6047 * 11057 171 29 34 chrX 111230989 111234725 -51365205 - L1PB1 LINE L1 -3 7586 3891 518 0 16 0 chrX 111234726 111234788 -51365142 + (TA)n Simple_repeat Simple_repeat 2 64 0 1811 179 3 0 chrX 111234798 111235095 -51364835 + AluSx SINE Alu 1 298 -14 14598 150 15 7 chrX 111235096 111237744 -51362186 - L1PB1 LINE L1 -4170 3414 756 975 83 28 0 chrX 111237745 111237939 -51361991 - AluSc SINE Alu 0 358 161 5753 165 4 35 chrX 111237939 111239002 -51360928 - L1PA12 LINE L1 -6541 1040 11 4816 244 86 24 chrX 111239439 111240897 -51359033 + L2 LINE L2 1455 3002 -311 25 0 0 0 chrX 111240979 111241004 -51358926 + AT_rich Low_complexity Low_complexity 1 25 0 308 287 0 37 chrX 111241007 111241115 -51358815 + L2 LINE L2 2196 2299 -1015 393 324 99 0 chrX 111241139 111241250 -51358680 + MER91A DNA MER1_type 58 179 -17 393 304 21 47 chrX 111241342 111241533 -51358397 + L2 LINE L2 2291 2476 -838 251 292 21 42 chrX 111241891 111241987 -51357943 + MIR3 SINE MIR 96 189 -19 309 351 59 27 chrX 111242050 111242272 -51357658 - MIR SINE MIR -6 256 28 198 0 0 0 chrX 111243621 111243643 -51356287 + (A)n Simple_repeat Simple_repeat 1 22 0 264 367 7 29 chrX 111244058 111244197 -51355733 - L2 LINE L2 -1 3271 3136 353 129 0 0 chrX 111244219 111244281 -51355649 - L1MA9 LINE L1 -8 6304 6243 1395 63 0 5 chrX 111244314 111244504 -51355426 - L1MA3 LINE L1 0 6305 6117 1563 105 8 16 chrX 111244504 111244752 -51355178 - L1MA9 LINE L1 -64 6248 6003 344 256 12 0 chrX 111245421 111245507 -51354423 - MIR SINE MIR -43 219 133 867 238 18 36 chrX 111245682 111245828 -51354102 + MIR SINE MIR 31 173 -89 2488 54 3 0 chrX 111245828 111246123 -51353807 - AluY SINE Alu -15 296 1 867 238 18 36 chrX 111246123 111246199 -51353731 + MIR SINE MIR 173 249 -13 1056 238 58 11 chrX 111246254 111246509 -51353421 + MIR SINE MIR 2 262 0 761 250 52 73 chrX 111246497 111246745 -51353185 - MIR SINE MIR -19 243 1 * 879 284 70 0 chrX 111247445 111247688 -51352242 - MIR SINE MIR -1 261 2 211 194 0 0 chrX 111247738 111247774 -51352156 + CT-rich Low_complexity Low_complexity 1 36 0 486 328 28 0 chrX 111248020 111248200 -51351730 + MIR SINE MIR 12 196 -66 1674 183 7 4 chrX 111248225 111248504 -51351426 + AluJo SINE Alu 1 280 -32 483 261 19 6 chrX 111248961 111249122 -51350808 - MER103 DNA DNA -2 164 2 725 280 10 5 chrX 111249742 111249942 -51349988 + HAL1 LINE L1 526 726 -1781 * 1703 238 56 11 chrX 111249941 111250462 -51349468 + HAL1 LINE L1 53 596 -1911 760 233 40 91 chrX 111250474 111250847 -51349083 + LTR37B LTR ERV1 7 360 -108 680 201 35 7 chrX 111250899 111251043 -51348887 + HAL1 LINE L1 600 747 -1760 464 192 23 62 chrX 111251051 111251181 -51348749 + MER94 DNA DNA 1 125 -9 3469 249 79 44 chrX 111251190 111252754 -51347176 + HAL1 LINE L1 748 2365 -142 1852 142 7 0 chrX 111252755 111253044 -51346886 + L1PA16 LINE L1 5863 6153 -13 1773 185 0 19 chrX 111253053 111253366 -51346564 - AluJb SINE Alu -5 307 1 194 0 39 0 chrX 111253415 111253441 -51346489 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5390 161 18 6 chrX 111253446 111255386 -51344544 - L1MA8 LINE L1 -13 6278 4319 230 269 21 32 chrX 111255418 111255511 -51344419 + HAL1 LINE L1 2407 2498 -9 445 273 17 8 chrX 111255787 111255912 -51344018 + MIR SINE MIR 33 157 -65 222 37 0 0 chrX 111256561 111256588 -51343342 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 187 146 36 0 chrX 111256727 111256782 -51343148 + (TA)n Simple_repeat Simple_repeat 2 58 0 485 240 0 10 chrX 111256876 111256976 -51342954 + MIR SINE MIR 43 141 -121 789 253 64 18 chrX 111258181 111258462 -51341468 + L2 LINE L2 2097 2390 -924 * 1655 291 63 22 chrX 111258460 111259222 -51340708 - L2 LINE L2 -31 3282 2495 398 256 23 45 chrX 111259202 111259335 -51340595 + L2 LINE L2 2397 2526 -788 * 502 273 50 40 chrX 111259544 111259742 -51340188 + L2 LINE L2 3114 3313 0 359 261 113 9 chrX 111260072 111260187 -51339743 - L2 LINE L2 -4 3309 3183 448 344 46 5 chrX 111260510 111260705 -51339225 - LTR16B LTR ERVL -261 203 1 784 261 39 5 chrX 111261143 111261346 -51338584 - MLT1I LTR MaLR 0 409 200 399 206 0 0 chrX 111261535 111261608 -51338322 + L2 LINE L2 3241 3313 0 704 243 84 13 chrX 111262047 111262273 -51337657 + MIR SINE MIR 21 262 0 200 309 15 29 chrX 111262257 111262325 -51337605 - MIR SINE MIR 0 262 196 * 218 103 0 26 chrX 111262329 111262368 -51337562 + (TG)n Simple_repeat Simple_repeat 2 39 0 868 230 19 43 chrX 111262380 111262589 -51337341 - MIR SINE MIR -58 204 1 237 313 67 56 chrX 111263137 111263332 -51336598 + MIR SINE MIR 2 198 -64 222 288 0 17 chrX 111263468 111263527 -51336403 - MIR SINE MIR -135 127 70 417 39 0 0 chrX 111263939 111263990 -51335940 + (CA)n Simple_repeat Simple_repeat 2 52 0 2311 65 10 0 chrX 111264175 111264466 -51335464 - AluY SINE Alu -17 294 1 29 70 0 0 chrX 111265381 111265438 -51334492 + AT_rich Low_complexity Low_complexity 1 57 0 2008 133 3 11 chrX 111266886 111267206 -51332724 + AluSx SINE Alu 1 318 0 2489 66 0 25 chrX 111269170 111269488 -51330442 - AluY SINE Alu -1 310 1 2204 115 87 20 chrX 111269834 111270224 -51329706 - MSTA LTR MaLR -12 416 1 189 107 0 0 chrX 111270583 111270611 -51329319 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 443 228 134 34 chrX 111270620 111270769 -51329161 + MIR SINE MIR 6 169 -93 330 213 53 0 chrX 111270785 111270860 -51329070 - MIR SINE MIR -5 257 179 185 250 25 0 chrX 111270888 111270928 -51329002 + MIR SINE MIR 220 260 -2 480 155 0 0 chrX 111271977 111272061 -51327869 + L1MB2 LINE L1 6081 6164 -7 202 94 0 31 chrX 111272471 111272503 -51327427 + (CA)n Simple_repeat Simple_repeat 2 32 0 309 89 0 0 chrX 111272659 111272704 -51327226 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 503 246 30 18 chrX 111272732 111272899 -51327031 - L1MC4a LINE L1 -1913 5895 5727 455 353 94 16 chrX 111272905 111273276 -51326654 + L1ME4a LINE L1 5718 6117 -4 816 264 54 21 chrX 111273775 111274017 -51325913 + MIR SINE MIR 13 262 0 1592 185 17 13 chrX 111274252 111274550 -51325380 + AluJb SINE Alu 1 299 -13 2273 88 7 3 chrX 111274550 111274847 -51325083 + AluY SINE Alu 1 298 -13 332 237 100 45 chrX 111274858 111275000 -51324930 + MIR SINE MIR 30 176 -62 424 205 9 9 chrX 111275003 111275115 -51324815 - L1PB4 LINE L1 -11 6145 6034 324 180 33 0 chrX 111275116 111275177 -51324753 - L1PB4 LINE L1 -82 6074 6012 242 247 65 39 chrX 111275179 111275256 -51324674 + MIR SINE MIR 167 245 -17 * 429 295 9 9 chrX 111275255 111275367 -51324563 - L2 LINE L2 -1 3271 3160 2895 40 0 0 chrX 111275996 111276342 -51323588 + L1PA3 LINE L1 5810 6155 0 29 47 0 0 chrX 111276342 111276385 -51323545 + AT_rich Low_complexity Low_complexity 1 43 0 306 115 0 0 chrX 111276868 111276920 -51323010 + (TG)n Simple_repeat Simple_repeat 1 52 0 294 220 114 23 chrX 111277073 111277205 -51322725 - MER103 DNA DNA 0 166 23 234 0 0 0 chrX 111277211 111277237 -51322693 + (T)n Simple_repeat Simple_repeat 1 26 0 1035 97 103 0 chrX 111277740 111277895 -51322035 - AluSc SINE Alu -7 302 132 2235 82 0 14 chrX 111277895 111278235 -51321695 - AluY SINE Alu 0 311 1 266 297 135 40 chrX 111278419 111278567 -51321363 + MIR3 SINE MIR 37 198 -10 702 256 52 11 chrX 111278965 111279156 -51320774 - MIR SINE MIR -56 206 8 772 282 48 5 chrX 111279732 111279977 -51319953 - MIR SINE MIR -1 261 8 385 228 18 44 chrX 111280468 111280582 -51319348 - MIR SINE MIR -69 193 83 1700 198 23 11 chrX 111281681 111282034 -51317896 - MLT1A2 LTR MaLR -17 357 1 1516 170 32 0 chrX 111282069 111282322 -51317608 - AluJb SINE Alu -21 291 31 331 303 0 0 chrX 111282337 111282426 -51317504 - L1MC4 LINE L1 -1339 6703 6615 317 322 0 0 chrX 111282349 111282439 -51317491 + L1MC4 LINE L1 6614 6703 -1339 * 195 250 0 0 chrX 111282441 111282493 -51317437 + (TA)n Simple_repeat Simple_repeat 2 53 0 787 207 0 0 chrX 111282493 111282633 -51317297 + AluJb SINE Alu 150 289 -23 1089 231 30 15 chrX 111282670 111282939 -51316991 + MLT1A2 LTR MaLR 1 273 -101 700 99 54 0 chrX 111282941 111283273 -51316657 + (TA)n Simple_repeat Simple_repeat 1 350 0 231 172 0 31 chrX 111283275 111283339 -51316591 + (TATAA)n Simple_repeat Simple_repeat 2 63 0 410 122 68 0 chrX 111283339 111283487 -51316443 + (TA)n Simple_repeat Simple_repeat 1 158 0 215 264 80 72 chrX 111283783 111283908 -51316022 + MIR3 SINE MIR 11 136 -72 481 297 144 20 chrX 111284699 111284894 -51315036 + MIR SINE MIR 1 219 -43 180 0 0 0 chrX 111285857 111285877 -51314053 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 457 280 34 0 chrX 111285977 111286095 -51313835 - MIR SINE MIR -60 202 81 375 73 0 0 chrX 111286179 111286234 -51313696 + (TC)n Simple_repeat Simple_repeat 1 55 0 254 106 0 85 chrX 111286704 111286751 -51313179 - MIR SINE MIR -131 131 89 519 308 33 45 chrX 111288359 111288771 -51311159 - L1P3 LINE L1 -347 5807 5400 559 275 25 0 chrX 111288918 111289038 -51310892 + MIR3 SINE MIR 78 200 -8 617 215 8 0 chrX 111289038 111289168 -51310762 + L1PB4 LINE L1 6026 6156 0 1347 99 0 0 chrX 111289703 111289874 -51310056 + AluSg/x SINE Alu 74 244 -68 639 277 77 9 chrX 111290233 111290453 -51309477 - MIR SINE MIR -26 236 2 417 306 82 6 chrX 111290823 111290993 -51308937 + L2 LINE L2 3014 3196 -117 1293 252 22 6 chrX 111292063 111292424 -51307506 - L1ME2 LINE L1 -9 6155 5789 2436 87 0 0 chrX 111293827 111294183 -51305747 + AluSc SINE Alu 1 309 0 296 269 172 20 chrX 111294183 111294385 -51305545 - MIR SINE MIR 0 262 30 253 186 17 0 chrX 111294447 111294506 -51305424 + L1MA5 LINE L1 6216 6275 -25 743 275 144 37 chrX 111295357 111295948 -51303982 - L1MC4a LINE L1 -541 5818 5266 1712 168 14 7 chrX 111296033 111296359 -51303571 - AluJb SINE Alu 0 330 3 1780 198 26 11 chrX 111296495 111296873 -51303057 - L1MB7 LINE L1 -16 6404 6021 805 219 5 19 chrX 111296873 111297083 -51302847 - L1MB7 LINE L1 -953 5429 5223 * 971 223 260 18 chrX 111297071 111297529 -51302401 - L1MB7 LINE L1 -3034 3348 2780 * 8786 42 9 1 chrX 111297526 111298747 -51301183 + L1P2 LINE L1 4296 5529 -625 * 42431 36 22 2 chrX 111298717 111304742 -51295188 + L1PA3 LINE L1 6 6154 -1 5446 49 4 0 chrX 111304742 111305412 -51294518 + L1PA4 LINE L1 5476 6153 -2 796 246 79 0 chrX 111305412 111305655 -51294275 - L1MB7 LINE L1 -3585 2797 2532 225 0 0 0 chrX 111305655 111305680 -51294250 + (TG)n Simple_repeat Simple_repeat 1 25 0 1416 178 44 3 chrX 111305770 111306063 -51293867 + L1MA9 LINE L1 5962 6266 -46 803 197 13 0 chrX 111306063 111306215 -51293715 - MER46A DNA MER2_type 0 236 83 5569 89 10 4 chrX 111306236 111307031 -51292899 - L1MA1 LINE L1 -8 6294 5495 555 190 0 10 chrX 111307031 111307131 -51292799 - MER46A DNA MER2_type -137 99 1 301 231 0 66 chrX 111307062 111307153 -51292777 + MER46A DNA MER2_type 78 162 -74 * 922 248 56 3 chrX 111307167 111307526 -51292404 - L1MB7 LINE L1 -3900 2484 2107 486 301 105 19 chrX 111308010 111308276 -51291654 - L1M4 LINE L1 -3005 3141 2853 230 49 0 49 chrX 111308382 111308423 -51291507 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1560 53 0 5 chrX 111308425 111308614 -51291316 - AluY SINE Alu -23 288 101 378 156 15 0 chrX 111308616 111308711 -51291219 - Alu SINE Alu -258 50 1 816 199 66 5 chrX 111309146 111309342 -51290588 - MER3 DNA MER1_type 0 209 2 1182 266 53 0 chrX 111309351 111309674 -51290256 - MER58B DNA MER1_type 0 341 2 2139 115 3 7 chrX 111309848 111310153 -51289777 - AluSx SINE Alu -7 305 2 25 0 0 0 chrX 111311136 111311161 -51288769 + AT_rich Low_complexity Low_complexity 1 25 0 207 296 204 35 chrX 111311178 111311320 -51288610 - MIR3 SINE MIR -37 171 6 544 294 0 0 chrX 111311828 111311954 -51287976 + MER94 DNA DNA 3 128 -6 1159 206 0 0 chrX 111312392 111312586 -51287344 - MER58A DNA MER1_type -30 194 1 23 33 0 0 chrX 111312666 111312696 -51287234 + AT_rich Low_complexity Low_complexity 1 30 0 2079 138 0 3 chrX 111313291 111313588 -51286342 - AluSx SINE Alu -15 297 2 730 234 6 40 chrX 111314827 111315002 -51284928 - MER5B DNA MER1_type -6 172 4 424 274 204 0 chrX 111315009 111315166 -51284764 - L3 LINE CR1 -5 1572 1384 2138 91 0 34 chrX 111315391 111315688 -51284242 + AluSg SINE Alu 1 287 -23 603 166 72 14 chrX 111316081 111316220 -51283710 + MER103 DNA DNA 3 149 -17 257 167 0 0 chrX 111316675 111316717 -51283213 - L2 LINE L2 -4 3309 3268 2302 122 119 10 chrX 111316873 111317259 -51282671 - MSTA LTR MaLR 0 428 1 2281 149 22 0 chrX 111317329 111317685 -51282245 - THE1B LTR MaLR 0 364 1 240 306 172 6 chrX 111318609 111318766 -51281164 + L1ME4a LINE L1 5936 6118 -3 2821 111 12 5 chrX 111369090 111369506 -51230424 - MER41A-int LTR ERV1 -5526 420 2 946 147 0 0 chrX 111369507 111369664 -51230266 - MER41A LTR ERV1 0 554 398 6082 198 16 10 chrX 111369665 111371049 -51228881 - L1 LINE L1 -1981 5584 4188 1949 142 3 3 chrX 111371049 111371358 -51228572 + AluSx SINE Alu 1 309 0 6082 198 16 10 chrX 111371358 111371426 -51228504 - L1 LINE L1 -3377 4188 4122 40437 38 22 1 chrX 111371426 111377452 -51222478 + L1PA3 LINE L1 3 6155 0 9841 142 18 2 chrX 111377466 111379567 -51220363 - L1 LINE L1 -3433 4132 2001 471 305 183 5 chrX 111380184 111380381 -51219549 + MIR SINE MIR 30 261 -1 2438 67 0 7 chrX 111381194 111381492 -51218438 - AluY SINE Alu -12 299 4 447 297 50 28 chrX 111381687 111381869 -51218061 + MIR SINE MIR 70 255 -7 240 86 0 0 chrX 111382468 111382503 -51217427 + (TC)n Simple_repeat Simple_repeat 1 35 0 418 336 24 43 chrX 111382697 111382851 -51217079 + MIR SINE MIR 1 151 -111 1856 158 14 14 chrX 111382851 111383148 -51216782 + AluJb SINE Alu 1 297 -15 418 336 24 43 chrX 111383148 111383204 -51216726 + MIR SINE MIR 151 207 -55 6970 207 34 22 chrX 111383214 111384913 -51215017 + L1M3f LINE L1 1 1678 -4650 1698 168 24 13 chrX 111384913 111385211 -51214719 + AluJo SINE Alu 1 301 -11 6970 207 34 22 chrX 111385211 111385884 -51214046 + L1M3f LINE L1 1678 2341 -3987 2262 96 7 3 chrX 111385884 111386185 -51213745 + AluY SINE Alu 1 302 -9 6970 207 34 22 chrX 111386185 111387788 -51212142 + L1M3f LINE L1 2341 4005 -2323 2281 114 111 8 chrX 111387788 111388174 -51211756 - MSTA LTR MaLR -2 426 1 6970 207 34 22 chrX 111388174 111388299 -51211631 + L1M3f LINE L1 4005 4127 -2201 727 294 31 18 chrX 111388389 111388651 -51211279 + MIR SINE MIR 5 262 0 246 253 75 89 chrX 111388773 111388919 -51211011 + L2 LINE L2 3161 3304 -9 225 302 16 0 chrX 111389453 111389516 -51210414 + MIR SINE MIR 28 91 -171 425 344 23 41 chrX 111390590 111390811 -51209119 - MIR SINE MIR -25 237 21 1191 289 22 16 chrX 111391092 111391539 -51208391 + ERVL LTR ERVL 4033 4482 -1282 457 320 47 8 chrX 111391573 111391807 -51208123 + ERVL LTR ERVL 4608 4850 -914 642 308 23 11 chrX 111391982 111392242 -51207688 + ERVL LTR ERVL 5074 5336 -428 2553 134 59 7 chrX 111392300 111392709 -51207221 - MSTB1 LTR MaLR -2 430 1 5490 149 32 16 chrX 111393077 111394890 -51205040 - L1MA8 LINE L1 -3 6288 4441 917 319 12 61 chrX 111394900 111395310 -51204620 - LTR16A1 LTR ERVL -42 415 26 1072 256 38 21 chrX 111395347 111395636 -51204294 + LTR67 LTR ERVL 29 322 -235 1954 190 53 8 chrX 111395656 111396206 -51203724 - MER90 LTR ERV1 0 614 1 609 240 52 74 chrX 111396211 111396440 -51203490 + LTR67 LTR ERVL 332 555 -2 468 276 39 0 chrX 111397114 111397241 -51202689 + L2 LINE L2 3182 3313 0 384 77 0 0 chrX 111397848 111397900 -51202030 + (CA)n Simple_repeat Simple_repeat 2 53 0 600 172 33 8 chrX 111398245 111398367 -51201563 + MIR SINE MIR 136 260 -2 343 233 17 108 chrX 111398697 111398773 -51201157 + MER5A DNA MER1_type 80 143 -46 964 152 0 93 chrX 111398773 111398977 -51200953 + MER53 DNA DNA 1 185 -4 343 233 17 108 chrX 111398977 111399020 -51200910 + MER5A DNA MER1_type 143 188 -1 3744 53 0 9 chrX 111399766 111400218 -51199712 + LTR7 LTR ERV1 1 448 -2 20368 81 57 62 chrX 111400241 111403547 -51196383 + HERVH LTR ERV1 1 3290 -4423 3392 122 4 2 chrX 111403537 111404038 -51195892 + HERVH LTR ERV1 3492 3993 -3720 * 4231 145 12 1 chrX 111404040 111404695 -51195235 + HERVH LTR ERV1 4488 5149 -2564 1430 130 19 0 chrX 111404696 111404912 -51195018 + HERVH LTR ERV1 5600 5819 -1894 * 2707 65 39 13 chrX 111404910 111405292 -51194638 + HERVH LTR ERV1 7322 7713 0 3724 53 0 9 chrX 111405292 111405744 -51194186 + LTR7 LTR ERV1 1 448 -2 382 320 33 39 chrX 111406426 111406579 -51193351 + L2 LINE L2 3113 3264 -8 259 329 26 0 chrX 111407103 111407179 -51192751 + L2 LINE L2 3225 3302 -11 1491 262 33 70 chrX 111407753 111408364 -51191566 + MLT1E LTR MaLR 1 534 -15 2928 97 3 0 chrX 111408364 111408725 -51191205 - THE1B LTR MaLR -2 362 1 1491 262 33 70 chrX 111408725 111408739 -51191191 + MLT1E LTR MaLR 534 547 -2 408 303 9 34 chrX 111409655 111409830 -51190100 - MIR SINE MIR -61 201 32 357 250 61 15 chrX 111410161 111410293 -51189637 + MER103 DNA DNA 29 166 0 506 316 0 19 chrX 111411395 111411553 -51188377 + MER5A DNA MER1_type 32 186 -3 207 244 0 0 chrX 111411554 111411595 -51188335 + MIR3 SINE MIR 151 191 -17 874 224 46 10 chrX 111411674 111411870 -51188060 - MER105 DNA DNA 0 204 2 234 204 74 0 chrX 111411945 111411999 -51187931 + MLT1J1 LTR MaLR 266 323 -123 408 344 38 6 chrX 111412114 111412271 -51187659 - L2 LINE L2 -520 2794 2633 211 355 0 0 chrX 111412331 111412393 -51187537 - L2 LINE L2 -32 3240 3179 326 236 0 22 chrX 111412763 111412852 -51187078 + L1ME2 LINE L1 6076 6162 -2 276 53 0 0 chrX 111413224 111413262 -51186668 + (CA)n Simple_repeat Simple_repeat 2 39 0 320 380 30 61 chrX 111413772 111414264 -51185666 + L2 LINE L2 2152 2628 -686 333 385 34 0 chrX 111414320 111414437 -51185493 + L2 LINE L2 3122 3242 -30 185 212 0 0 chrX 111414507 111414540 -51185390 - L2 LINE L2 -56 3216 3184 300 326 0 0 chrX 111414731 111414817 -51185113 + L2 LINE L2 3186 3271 -1 16705 78 5 1 chrX 111415190 111418100 -51181830 - L1PA6 LINE L1 0 6154 3240 20137 120 6 34 chrX 111418101 111421279 -51178651 - L1PA6 LINE L1 -3049 3097 11 947 330 102 7 chrX 111422613 111423094 -51176836 + L2 LINE L2 2785 3313 0 294 292 10 31 chrX 111423243 111423339 -51176591 + MLT1K LTR MaLR 129 222 -366 243 318 0 0 chrX 111423607 111423673 -51176257 - MIR SINE MIR -78 130 65 24973 163 15 26 chrX 111424573 111429487 -51170443 + L1PA10 LINE L1 1 4982 -1501 201 39 0 0 chrX 111429487 111429513 -51170417 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 24973 163 15 26 chrX 111429513 111430995 -51168935 + L1PA10 LINE L1 4982 6478 -5 205 167 0 0 chrX 111431332 111431368 -51168562 + (CA)n Simple_repeat Simple_repeat 1 36 0 241 298 53 38 chrX 111431499 111431630 -51168300 - MER94 DNA DNA -1 133 1 302 292 83 28 chrX 111431694 111431838 -51168092 - MIR SINE MIR -55 207 56 439 318 78 7 chrX 111432832 111432986 -51166944 - L2 LINE L2 0 3272 3108 327 245 10 82 chrX 111433000 111433098 -51166832 - L2 LINE L2 0 3272 3182 555 288 77 12 chrX 111433498 111433668 -51166262 + MER5A DNA MER1_type 4 184 -5 1556 209 42 24 chrX 111433698 111434029 -51165901 - MLT1E3 LTR MaLR 0 624 288 1893 119 175 6 chrX 111434092 111434412 -51165518 - MSTA LTR MaLR -54 374 1 9692 154 48 2 chrX 111434412 111435991 -51163939 - MSTA-int LTR MaLR 0 1651 1 2173 164 123 5 chrX 111435991 111436374 -51163556 - MSTA LTR MaLR 0 428 1 5510 164 18 17 chrX 111436375 111437542 -51162388 - L1M1 LINE L1 -538 5765 4588 2081 138 7 0 chrX 111437542 111437840 -51162090 + AluSx SINE Alu 1 300 -12 5510 164 18 17 chrX 111437840 111438160 -51161770 - L1M1 LINE L1 -1715 4588 4270 207 200 0 0 chrX 111438196 111438231 -51161699 + L2 LINE L2 3264 3298 -15 197 297 16 0 chrX 111439043 111439107 -51160823 + MER5A DNA MER1_type 9 73 -116 1577 189 3 14 chrX 111439633 111439924 -51160006 - AluJo SINE Alu 0 312 25 458 211 70 9 chrX 111440314 111440428 -51159502 + L1MB7 LINE L1 6054 6174 -10 473 270 36 0 chrX 111440430 111440541 -51159389 + MER5A DNA MER1_type 63 177 -12 214 162 0 0 chrX 111440708 111440745 -51159185 + GA-rich Low_complexity Low_complexity 2 38 0 261 0 0 0 chrX 111441112 111441141 -51158789 + (A)n Simple_repeat Simple_repeat 1 29 0 543 179 194 8 chrX 111441314 111441448 -51158482 + MER5A DNA MER1_type 1 159 -30 262 329 0 0 chrX 111442026 111442105 -51157825 - Charlie8 DNA MER1_type -4 2413 2335 255 272 99 10 chrX 111442159 111442309 -51157621 - Charlie8 DNA MER1_type -2200 217 1 2238 207 42 94 chrX 111442644 111443010 -51156920 + L1ME3 LINE L1 5423 5807 -355 2019 126 38 67 chrX 111443010 111443383 -51156547 + THE1B LTR MaLR 2 363 -1 12347 94 16 1 chrX 111443384 111444940 -51154990 + THE1B-int LTR MaLR 1 1580 0 2291 112 21 53 chrX 111444940 111445316 -51154614 + THE1B LTR MaLR 1 364 0 189 171 0 0 chrX 111445316 111445351 -51154579 + (TA)n Simple_repeat Simple_repeat 2 36 0 2238 207 42 94 chrX 111445351 111445656 -51154274 + L1ME3 LINE L1 5804 6095 -67 279 79 0 0 chrX 111445851 111445889 -51154041 + (CA)n Simple_repeat Simple_repeat 2 39 0 272 243 27 0 chrX 111445890 111445964 -51153966 + (TA)n Simple_repeat Simple_repeat 1 76 0 229 268 127 14 chrX 111446376 111446447 -51153483 - MIR3 SINE MIR -38 170 92 880 247 15 71 chrX 111446530 111446844 -51153086 - MLT2B1 LTR ERVL -18 502 232 5954 116 16 1 chrX 111446884 111447842 -51152088 - L1MA2 LINE L1 0 6304 5333 189 0 0 0 chrX 111448166 111448187 -51151743 + (A)n Simple_repeat Simple_repeat 1 21 0 874 222 17 0 chrX 111448566 111448796 -51151134 - Charlie2b DNA MER1_type -17 2765 2532 820 330 32 25 chrX 111448807 111449277 -51150653 + L1M3b LINE L1 1224 1696 -5800 6786 226 49 39 chrX 111449616 111449766 -51150164 + L1M3b LINE L1 2012 2159 -5406 261 57 0 0 chrX 111449766 111449801 -51150129 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6786 226 49 39 chrX 111449801 111451266 -51148664 + L1M3b LINE L1 2159 3609 -3956 3056 95 28 0 chrX 111451266 111451698 -51148232 - L1PA11 LINE L1 -2 6172 5729 6786 226 49 39 chrX 111451698 111453247 -51146683 + L1M3b LINE L1 3609 5142 -2423 2161 155 104 0 chrX 111453247 111453633 -51146297 - MSTB LTR MaLR 0 426 1 6786 226 49 39 chrX 111453633 111453798 -51146132 + L1M3b LINE L1 5142 5304 -2261 346 102 0 3 chrX 111453798 111453862 -51146068 + Alu SINE Alu 249 301 0 6786 226 49 39 chrX 111453862 111453916 -51146014 + L1M3b LINE L1 5304 5356 -2209 2156 151 5 22 chrX 111453916 111454286 -51145644 - THE1B LTR MaLR 0 364 1 6786 226 49 39 chrX 111454286 111454629 -51145301 + L1M3b LINE L1 5356 5786 -1779 638 221 25 0 chrX 111454669 111454827 -51145103 + L1MA10 LINE L1 6163 6324 -10 480 280 44 51 chrX 111454915 111455190 -51144740 + L1M3b LINE L1 5426 5698 -1867 973 264 68 22 chrX 111455201 111455610 -51144320 + L1M3b LINE L1 5902 6329 -1236 518 307 78 20 chrX 111455605 111455901 -51144029 + L1MD2 LINE L1 5798 6110 -249 * 25 75 0 0 chrX 111455902 111455955 -51143975 + AT_rich Low_complexity Low_complexity 1 53 0 638 215 124 15 chrX 111455996 111456261 -51143669 - Charlie2b DNA MER1_type -301 2481 2188 7611 163 62 3 chrX 111456262 111459496 -51140434 + L1PB1 LINE L1 114 3747 -3115 42051 43 1 1 chrX 111459510 111465732 -51134198 + L1PA3 LINE L1 1 6155 0 9772 182 7 9 chrX 111465728 111468863 -51131067 + L1PB1 LINE L1 3745 6867 0 * 528 258 159 11 chrX 111468923 111469187 -51130743 - Charlie2b DNA MER1_type -688 2094 1792 1181 180 133 0 chrX 111469188 111469482 -51130448 + L1MD3 LINE L1 6934 7266 -729 857 97 6 114 chrX 111469484 111469659 -51130271 + MLT2B1 LTR ERVL 1 156 -364 3137 84 95 15 chrX 111469662 111470137 -51129793 + L1PA10 LINE L1 5656 6168 0 2148 179 5 0 chrX 111470221 111470590 -51129340 + MLT2B1 LTR ERVL 150 520 0 1401 202 23 73 chrX 111470651 111471127 -51128803 - Charlie2b DNA MER1_type -1129 1653 1202 317 225 11 45 chrX 111471135 111471224 -51128706 - Charlie2b DNA MER1_type -2244 618 533 * 708 235 26 71 chrX 111471222 111471490 -51128440 - Charlie2b DNA MER1_type -2520 262 7 326 233 29 10 chrX 111471708 111471811 -51128119 - LTR16C LTR ERVL -23 468 364 207 194 65 81 chrX 111472147 111472209 -51127721 - MIR SINE MIR -78 184 124 265 328 59 25 chrX 111472238 111472357 -51127573 + MIR SINE MIR 95 217 -45 723 295 20 0 chrX 111473346 111473546 -51126384 - MIR SINE MIR -22 240 37 405 271 121 106 chrX 111473877 111474265 -51125665 - L2 LINE L2 0 3313 2920 16758 36 1 0 chrX 111474288 111477772 -51122158 + L1PA4 LINE L1 2561 6152 -3 25 0 0 0 chrX 111477772 111477797 -51122133 + AT_rich Low_complexity Low_complexity 1 25 0 199 281 0 0 chrX 111477825 111477882 -51122048 - L2 LINE L2 -1092 2222 2166 * 400 216 101 68 chrX 111477878 111478026 -51121904 + L2 LINE L2 3159 3311 -2 238 281 0 0 chrX 111478546 111478603 -51121327 - L2 LINE L2 0 3272 3216 821 197 14 26 chrX 111480117 111480332 -51119598 - L1MB1 LINE L1 -100 6068 5853 287 113 0 65 chrX 111480308 111480370 -51119560 + L1MB1 LINE L1 6110 6167 -1 * 1867 181 15 33 chrX 111480717 111481114 -51118816 - MLT1B LTR MaLR 0 390 1 231 328 0 0 chrX 111481815 111481882 -51118048 + GA-rich Low_complexity Low_complexity 5 71 0 1873 253 29 6 chrX 111482520 111482999 -51116931 - MLT1E2 LTR MaLR 0 626 137 1369 176 163 0 chrX 111484675 111484970 -51114960 - MER2 DNA MER2_type 0 344 2 290 341 33 0 chrX 111485012 111485103 -51114827 + MER5A DNA MER1_type 17 110 -79 1939 131 64 17 chrX 111485188 111485546 -51114384 + THE1C LTR MaLR 1 375 0 10755 109 28 7 chrX 111485546 111487094 -51112836 + THE1C-int LTR MaLR 1 1580 0 1257 176 89 25 chrX 111487094 111487416 -51112514 + THE1C LTR MaLR 1 355 0 429 229 57 33 chrX 111487504 111487626 -51112304 - MIR SINE MIR -67 141 38 21 36 0 0 chrX 111487866 111487894 -51112036 + AT_rich Low_complexity Low_complexity 1 28 0 237 96 77 0 chrX 111488034 111488086 -51111844 - L1PA8 LINE L1 -2 6170 6115 3707 122 43 14 chrX 111488220 111488842 -51111088 + LTR48B LTR ERV1 5 644 0 474 249 231 18 chrX 111488914 111489195 -51110735 + MLT1J2 LTR MaLR 97 437 -13 460 248 15 0 chrX 111489471 111489604 -51110326 + L1MB7 LINE L1 6050 6184 0 628 272 75 0 chrX 111490394 111490567 -51109363 - MIR SINE MIR -3 259 74 210 302 86 26 chrX 111490682 111490798 -51109132 - MIR SINE MIR -17 245 123 483 259 205 11 chrX 111490802 111490987 -51108943 - L2 LINE L2 -2 3311 3091 297 312 52 51 chrX 111491140 111491434 -51108496 - MLT1H LTR MaLR -48 361 98 362 315 118 21 chrX 111491509 111492027 -51107903 - L1ME3A LINE L1 -222 5948 5381 359 236 23 46 chrX 111492050 111492224 -51107706 - L1ME3A LINE L1 -808 5338 5169 462 238 86 25 chrX 111492257 111492494 -51107436 - MLT1I LTR MaLR -96 313 58 503 294 82 17 chrX 111492506 111492921 -51107009 - L1ME3A LINE L1 -976 5170 4729 2796 29 0 0 chrX 111493301 111493612 -51106318 - AluY SINE Alu 0 311 1 323 349 47 6 chrX 111493657 111493826 -51106104 - L2 LINE L2 -719 2595 2420 376 291 108 19 chrX 111493905 111494063 -51105867 - L2 LINE L2 -1120 2194 2023 693 257 33 11 chrX 111494071 111494254 -51105676 - L2 LINE L2 -906 2408 2222 517 311 72 6 chrX 111494261 111494428 -51105502 + MER5B DNA MER1_type 1 178 0 581 247 169 7 chrX 111494436 111494590 -51105340 - MER5A DNA MER1_type 0 189 11 352 171 66 0 chrX 111494601 111494677 -51105253 - L2 LINE L2 -1093 2221 2141 712 296 193 29 chrX 111494712 111495235 -51104695 - L2 LINE L2 -2155 1159 551 404 270 20 10 chrX 111495240 111495340 -51104590 - MER5B DNA MER1_type -76 102 2 326 299 28 28 chrX 111495460 111495567 -51104363 - MIR SINE MIR -154 108 2 1816 254 29 20 chrX 111497790 111498278 -51101652 + LTR33 LTR ERVL 30 521 0 441 332 123 30 chrX 111498713 111499086 -51100844 + L2 LINE L2 2457 2864 -450 304 293 66 117 chrX 111499194 111499450 -51100480 + L2 LINE L2 3028 3270 -2 248 200 0 0 chrX 111501039 111501084 -51098846 - U3 snRNA snRNA -172 45 1 605 255 47 77 chrX 111501296 111501531 -51098399 - MIR SINE MIR -34 228 1 188 281 78 65 chrX 111502270 111502423 -51097507 + L2 LINE L2 2941 3095 -177 216 361 0 0 chrX 111502737 111502809 -51097121 + L2 LINE L2 2898 2969 -344 183 42 0 0 chrX 111503344 111503368 -51096562 + (CA)n Simple_repeat Simple_repeat 2 25 0 200 197 91 61 chrX 111503556 111503622 -51096308 - MIR SINE MIR -124 84 17 467 244 226 10 chrX 111504612 111504825 -51095105 - MIR SINE MIR -5 257 1 338 284 17 17 chrX 111504883 111504999 -51094931 + MIR3 SINE MIR 90 205 -3 188 330 0 53 chrX 111505130 111505224 -51094706 - L2 LINE L2 -292 2980 2892 927 168 56 116 chrX 111505372 111505604 -51094326 - MER20 DNA MER1_type 0 219 2 219 299 15 0 chrX 111509466 111509533 -51090397 - MIR SINE MIR 0 262 195 348 286 176 50 chrX 111509682 111510064 -51089866 - L2 LINE L2 -251 3021 2601 249 33 0 0 chrX 111510200 111510230 -51089700 + (TG)n Simple_repeat Simple_repeat 1 30 0 432 324 44 15 chrX 111510824 111511043 -51088887 + MIR SINE MIR 5 230 -32 285 211 28 83 chrX 111511107 111511216 -51088714 - MER5A DNA MER1_type -27 162 60 787 197 0 0 chrX 111511616 111511748 -51088182 + AluJb SINE Alu 2 133 -179 340 68 0 0 chrX 111511762 111511806 -51088124 - AluJb SINE Alu -171 131 88 348 313 12 48 chrX 111512343 111512413 -51087517 - MIR SINE MIR -40 222 151 1923 139 71 49 chrX 111512413 111512485 -51087445 - THE1C LTR MaLR 0 375 306 2511 81 0 0 chrX 111512485 111512792 -51087138 + AluSg SINE Alu 1 307 -3 1923 139 71 49 chrX 111512792 111513086 -51086844 - THE1C LTR MaLR -69 306 1 348 313 12 48 chrX 111513086 111513181 -51086749 - MIR SINE MIR -111 151 63 231 317 83 25 chrX 111513243 111513363 -51086567 + MIR SINE MIR 51 177 -85 428 157 48 0 chrX 111513745 111513828 -51086102 - L1MA9 LINE L1 -38 6274 6188 246 32 0 0 chrX 111513836 111513867 -51086063 + (TG)n Simple_repeat Simple_repeat 2 32 0 313 259 127 44 chrX 111513994 111514152 -51085778 - MIR3 SINE MIR -33 175 5 272 250 250 62 chrX 111514558 111514734 -51085196 - MIR SINE MIR -52 210 2 216 0 0 0 chrX 111514809 111514833 -51085097 + (ATG)n Simple_repeat Simple_repeat 2 25 0 474 228 206 38 chrX 111514840 111515024 -51084906 - MIR SINE MIR -7 255 41 185 210 258 0 chrX 111515341 111515403 -51084527 + MIR SINE MIR 34 111 -97 427 259 43 17 chrX 111516294 111516410 -51083520 + MIR SINE MIR 23 141 -67 7732 48 3 1 chrX 111516587 111517723 -51082207 + L1PA7 LINE L1 5017 6154 0 22 80 0 0 chrX 111518103 111518153 -51081777 + AT_rich Low_complexity Low_complexity 1 50 0 1151 23 0 0 chrX 111518473 111518603 -51081327 - L1PA4 LINE L1 -1 6154 6025 688 253 131 48 chrX 111518900 111519296 -51080634 - HAL1 LINE L1 -743 1764 1336 1000 280 138 9 chrX 111519619 111520047 -51079883 + L2 LINE L2 1612 2094 -1220 584 311 51 0 chrX 111520047 111520086 -51079844 + MIR SINE MIR 4 40 -222 798 146 34 146 chrX 111520086 111520319 -51079611 - MER3 DNA MER1_type -2 207 1 584 311 51 0 chrX 111520319 111520475 -51079455 + MIR SINE MIR 40 209 -53 671 243 35 29 chrX 111520562 111520735 -51079195 + MIR SINE MIR 60 233 -29 1208 286 149 24 chrX 111520781 111521596 -51078334 + L2 LINE L2 2196 3110 -162 291 211 99 0 chrX 111521714 111521785 -51078145 + MIR3 SINE MIR 83 160 -48 325 226 55 72 chrX 111521813 111521994 -51077936 - L2 LINE L2 -75 3238 3061 183 271 21 0 chrX 111522019 111522067 -51077863 + MIR3 SINE MIR 155 203 -5 313 241 88 88 chrX 111522408 111522624 -51077306 + MIR SINE MIR 47 262 0 377 228 32 39 chrX 111522650 111522774 -51077156 + MIR SINE MIR 12 132 -76 828 280 108 16 chrX 111523278 111523656 -51076274 + L1MC4a LINE L1 5380 5792 -2016 281 193 0 18 chrX 111523689 111523746 -51076184 - L2 LINE L2 -56 3257 3202 342 229 90 25 chrX 111523751 111523873 -51076057 + L1MC4a LINE L1 5773 5902 -1906 220 117 0 83 chrX 111523939 111523999 -51075931 + (TTTTTA)n Simple_repeat Simple_repeat 5 59 0 21 0 0 0 chrX 111524126 111524147 -51075783 + AT_rich Low_complexity Low_complexity 1 21 0 1325 262 133 15 chrX 111524172 111524569 -51075361 - MLT1H1 LTR MaLR -2 553 110 334 266 0 17 chrX 111524636 111524741 -51075189 - MLT1H1 LTR MaLR -481 109 6 1204 159 0 6 chrX 111525073 111525255 -51074675 - AluJb SINE Alu -131 181 1 7380 191 21 46 chrX 111525387 111526093 -51073837 + L1MB7 LINE L1 3628 4351 -1833 2214 209 40 2 chrX 111526093 111526495 -51073435 - MER47B DNA MER2_type 0 418 2 7380 191 21 46 chrX 111526495 111527530 -51072400 + L1MB7 LINE L1 4351 5411 -773 2181 119 6 3 chrX 111527530 111527841 -51072089 + AluSx SINE Alu 1 312 0 7380 191 21 46 chrX 111527841 111528566 -51071364 + L1MB7 LINE L1 5411 6053 -131 1805 103 51 45 chrX 111528566 111528858 -51071072 + AluSx SINE Alu 1 294 -18 7380 191 21 46 chrX 111528858 111528987 -51070943 + L1MB7 LINE L1 6053 6184 0 362 300 31 15 chrX 111529524 111529654 -51070276 - L3b LINE CR1 -156 1427 1296 202 233 0 89 chrX 111529636 111529726 -51070204 + L3b LINE CR1 1129 1210 -373 * 855 83 9 0 chrX 111531043 111531152 -51068778 + HY1 scRNA scRNA 1 110 -2 318 200 94 0 chrX 111531454 111531539 -51068391 + MLT1K LTR MaLR 491 583 -5 494 307 30 20 chrX 111531861 111532063 -51067867 + L3b LINE CR1 1282 1485 -98 287 321 46 53 chrX 111532142 111532273 -51067657 - MIR SINE MIR -58 150 21 397 267 60 135 chrX 111532459 111532777 -51067153 + L2 LINE L2 2967 3260 -12 395 294 14 0 chrX 111532894 111533032 -51066898 - MIR SINE MIR -2 206 63 727 216 0 66 chrX 111533173 111533340 -51066590 + MIR SINE MIR 2 157 -105 1317 174 8 2 chrX 111533340 111533622 -51066308 + MER2 DNA MER2_type 1 345 0 212 205 0 0 chrX 111533659 111533698 -51066232 + L2 LINE L2 3263 3301 -12 347 252 96 15 chrX 111534260 111534395 -51065535 - MER5A DNA MER1_type -37 152 7 226 299 82 21 chrX 111534411 111534508 -51065422 + MIR SINE MIR 17 119 -143 2279 114 0 0 chrX 111534570 111534877 -51065053 - AluSx SINE Alu -5 307 1 236 313 39 39 chrX 111535776 111535904 -51064026 - L2 LINE L2 -219 3053 2926 191 229 82 16 chrX 111536164 111536225 -51063705 + MER5A DNA MER1_type 125 189 0 287 343 9 9 chrX 111536296 111536401 -51063529 + MIR SINE MIR 25 129 -79 182 302 94 74 chrX 111536718 111536867 -51063063 + MER5B DNA MER1_type 21 172 -6 271 240 67 67 chrX 111538509 111538613 -51061317 - L2 LINE L2 0 3272 3169 999 157 25 98 chrX 111539027 111539263 -51060667 - MER20 DNA MER1_type 0 219 1 226 318 0 56 chrX 111539358 111539465 -51060465 - MIR SINE MIR -71 137 37 213 204 0 20 chrX 111542153 111542202 -51057728 + L2 LINE L2 3220 3267 -5 506 292 10 41 chrX 111542209 111542404 -51057526 - MIR3 SINE MIR -3 205 17 279 250 100 86 chrX 111542420 111542560 -51057370 - MIR3 SINE MIR -58 150 9 332 309 11 0 chrX 111543038 111543132 -51056798 - MIR SINE MIR -111 151 57 2106 144 15 2 chrX 111543386 111544662 -51055268 + L1PB1 LINE L1 4693 6148 -3 656 228 0 0 chrX 111545021 111545135 -51054795 + MER81 DNA DNA 1 114 0 807 307 103 22 chrX 111546064 111546422 -51053508 - L3b LINE CR1 -74 1509 1123 263 331 108 14 chrX 111548081 111548220 -51051710 + MER5A DNA MER1_type 38 189 0 314 326 68 15 chrX 111548223 111548355 -51051575 + MIR SINE MIR 12 150 -112 243 163 20 20 chrX 111548664 111548713 -51051217 + L2 LINE L2 3265 3313 0 297 197 0 0 chrX 111549512 111549573 -51050357 + (TG)n Simple_repeat Simple_repeat 2 62 0 206 205 0 0 chrX 111549574 111549613 -51050317 + (CG)n Simple_repeat Simple_repeat 1 39 0 1029 215 18 18 chrX 111551398 111551621 -51048309 + MER58A DNA MER1_type 2 224 0 990 204 5 63 chrX 111552261 111552482 -51047448 + MER63A DNA MER1_type 3 210 0 1482 197 34 6 chrX 111552943 111553293 -51046637 + L1MA4 LINE L1 5935 6294 -6 2138 128 0 0 chrX 111553303 111553593 -51046337 + AluSx SINE Alu 1 290 -22 10750 50 1 0 chrX 111553654 111555768 -51044162 - L1PA5 LINE L1 -3 6151 4037 462 229 64 0 chrX 111557077 111557186 -51042744 - MIR SINE MIR -75 187 72 346 333 163 19 chrX 111557439 111557703 -51042227 - L2 LINE L2 -954 2360 2059 22 0 0 0 chrX 111558268 111558290 -51041640 + AT_rich Low_complexity Low_complexity 1 22 0 781 356 72 10 chrX 111558376 111558778 -51041152 - L2 LINE L2 -3 3310 2884 1762 219 84 8 chrX 111558779 111559307 -51040623 + L1MB7 LINE L1 4920 5469 -714 270 136 0 0 chrX 111559859 111559903 -51040027 + (GGA)n Simple_repeat Simple_repeat 2 45 0 2672 173 25 59 chrX 111560766 111561360 -51038570 + L1MB7 LINE L1 5436 6009 -165 534 194 15 45 chrX 111561360 111561494 -51038436 - MER34B LTR ERV1 0 565 436 417 190 35 0 chrX 111561510 111561684 -51038246 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chrX 111561702 111561730 -51038200 + AT_rich Low_complexity Low_complexity 1 28 0 297 124 93 0 chrX 111561732 111561893 -51038037 + (TA)n Simple_repeat Simple_repeat 1 176 0 2758 129 11 31 chrX 111561897 111562346 -51037584 - MER34B LTR ERV1 -125 440 1 277 233 27 40 chrX 111562376 111562526 -51037404 + A-rich Low_complexity Low_complexity 5 152 0 674 186 93 0 chrX 111562528 111562668 -51037262 + L1MB7 LINE L1 6024 6176 -8 554 263 23 40 chrX 111563253 111563476 -51036454 - MIR SINE MIR 0 262 38 488 323 10 26 chrX 111563605 111563797 -51036133 - MIR SINE MIR 0 262 74 802 129 0 0 chrX 111563898 111564022 -51035908 - L1MB2 LINE L1 -260 5911 5788 214 256 39 0 chrX 111564023 111564101 -51035829 + (TA)n Simple_repeat Simple_repeat 2 82 0 11824 202 41 21 chrX 111564114 111567527 -51032403 - L1MB2 LINE L1 -393 5778 2296 11056 62 7 1 chrX 111568865 111570342 -51029588 + L1P LINE L1 2005 3490 -2656 351 61 41 0 chrX 111570342 111570391 -51029539 + L1P LINE L1 3450 3500 -2646 417 83 0 0 chrX 111570402 111570462 -51029468 - L1MA4 LINE L1 -399 5901 5842 8812 189 19 2 chrX 111570487 111572262 -51027668 - L1 LINE L1 -780 6785 4982 11650 179 51 10 chrX 111572263 111574327 -51025603 - L1 LINE L1 -5401 2164 15 23 33 0 0 chrX 111575142 111575172 -51024758 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chrX 111575861 111575884 -51024046 + (A)n Simple_repeat Simple_repeat 1 23 0 932 221 144 0 chrX 111575952 111576215 -51023715 - MER33 DNA MER1_type -22 302 2 7886 217 41 16 chrX 111576240 111579308 -51020622 - L1MB7 LINE L1 -12 6408 3269 502 68 101 0 chrX 111579308 111579527 -51020403 + (TA)n Simple_repeat Simple_repeat 1 241 0 603 82 98 0 chrX 111579539 111579840 -51020090 + (TA)n Simple_repeat Simple_repeat 1 330 0 3187 264 42 29 chrX 111579842 111580395 -51019535 - L1MB7 LINE L1 -3135 3247 2703 327 25 0 0 chrX 111580395 111580435 -51019495 + (TA)n Simple_repeat Simple_repeat 1 40 0 3187 264 42 29 chrX 111580435 111581251 -51018679 - L1MB7 LINE L1 -3679 2703 1899 2079 126 0 3 chrX 111581251 111581544 -51018386 + AluSx SINE Alu 1 292 -20 3187 264 42 29 chrX 111581544 111582587 -51017343 - L1MB7 LINE L1 -4483 1899 684 913 222 21 16 chrX 111582614 111582857 -51017073 + L1M4 LINE L1 3582 3825 -2321 230 147 0 0 chrX 111582856 111582890 -51017040 + L1MA9 LINE L1 6226 6259 -53 * 243 0 0 0 chrX 111582890 111582917 -51017013 + (TA)n Simple_repeat Simple_repeat 1 27 0 399 280 70 23 chrX 111587490 111587704 -51012226 + HAL1b LINE L1 381 604 -744 509 203 72 76 chrX 111587768 111588005 -51011925 + L1MC5 LINE L1 7204 7439 -522 * 42541 37 21 2 chrX 111587996 111594061 -51005869 + L1PA2 LINE L1 1 6155 0 1300 170 30 101 chrX 111594710 111595116 -51004814 - MLT1A1 LTR MaLR 0 419 1 1114 188 10 127 chrX 111596410 111596555 -51003375 + AluSp SINE Alu 5 97 -216 2422 72 0 0 chrX 111596555 111596848 -51003082 + AluY SINE Alu 1 293 -18 1114 188 10 127 chrX 111596848 111597010 -51002920 + AluSp SINE Alu 97 276 -37 1057 22 0 22 chrX 111597015 111597153 -51002777 + (GAAA)n Simple_repeat Simple_repeat 1 135 0 790 247 10 36 chrX 111597525 111597640 -51002290 + MER63A DNA MER1_type 7 117 -1571 2158 163 87 11 chrX 111597640 111598008 -51001922 - MSTD LTR MaLR 0 396 1 790 247 10 36 chrX 111598008 111598086 -51001844 + MER63A DNA MER1_type 117 195 -15 211 213 75 25 chrX 111598121 111598201 -51001729 + L3 LINE CR1 1216 1299 -278 301 267 136 28 chrX 111598236 111598431 -51001499 + MIR3 SINE MIR 7 262 0 189 175 63 159 chrX 111598694 111598757 -51001173 - L3 LINE CR1 -7 1570 1514 * 379 324 131 0 chrX 111598725 111598870 -51001060 - MIR3 SINE MIR -36 172 9 252 242 16 0 chrX 111599192 111599254 -51000676 + MIR3 SINE MIR 98 160 -48 579 350 31 62 chrX 111599263 111599680 -51000250 - L2 LINE L2 -5 3267 2864 227 250 0 0 chrX 111599691 111599739 -51000191 - MIR SINE MIR -2 260 213 216 0 0 0 chrX 111599748 111599772 -51000158 + (A)n Simple_repeat Simple_repeat 1 24 0 418 268 150 0 chrX 111599778 111599905 -51000025 - MER33 DNA MER1_type -178 146 1 222 194 0 42 chrX 111599918 111599990 -50999940 + T-rich Low_complexity Low_complexity 2 70 0 447 285 114 51 chrX 111600152 111600465 -50999465 - L2 LINE L2 -1010 2304 1965 4629 138 36 21 chrX 111600465 111601181 -50998749 + LTR8A LTR ERV1 1 727 0 447 285 114 51 chrX 111601181 111601218 -50998712 - L2 LINE L2 -1349 1965 1932 236 259 111 12 chrX 111601645 111601726 -50998204 + MER5A DNA MER1_type 98 186 -3 390 242 8 75 chrX 111601911 111602031 -50997899 + MIR SINE MIR 19 130 -78 245 143 0 20 chrX 111602937 111602986 -50996944 + (TTCTC)n Simple_repeat Simple_repeat 4 51 0 300 246 15 8 chrX 111603506 111603640 -50996290 + CT-rich Low_complexity Low_complexity 2 136 0 1523 215 96 9 chrX 111604429 111604773 -50995157 + MLT1A2 LTR MaLR 1 374 0 901 322 44 94 chrX 111605181 111606032 -50993898 + L2 LINE L2 2174 2966 -306 2277 98 0 13 chrX 111606032 111606337 -50993593 + AluSx SINE Alu 1 301 -11 901 322 44 94 chrX 111606337 111606542 -50993388 + L2 LINE L2 2966 3180 -92 1921 96 71 7 chrX 111606585 111606866 -50993064 - AluSx SINE Alu -13 299 1 2095 116 0 10 chrX 111606901 111607203 -50992727 - AluSx SINE Alu -9 303 5 239 310 23 23 chrX 111607503 111607590 -50992340 + L2 LINE L2 2985 3071 -201 468 248 8 0 chrX 111607660 111607777 -50992153 + MIR SINE MIR 102 219 -43 756 257 119 4 chrX 111607792 111608018 -50991912 - MIR SINE MIR 0 262 11 187 319 72 0 chrX 111608021 111608090 -50991840 + L2 LINE L2 3125 3198 -74 837 136 0 19 chrX 111609718 111609880 -50990050 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 194 247 103 0 chrX 111610005 111610073 -50989857 + MIR SINE MIR 81 156 -52 420 263 183 6 chrX 111610145 111610320 -50989610 - MIR SINE MIR -52 210 5 180 378 0 0 chrX 111610990 111611064 -50988866 - MIR3 SINE MIR -11 197 124 298 337 0 10 chrX 111611214 111611312 -50988618 + MIR3 SINE MIR 10 106 -102 387 0 0 0 chrX 111611372 111611415 -50988515 + (CA)n Simple_repeat Simple_repeat 2 44 0 195 162 0 0 chrX 111611415 111611452 -50988478 + GA-rich Low_complexity Low_complexity 1 37 0 821 138 0 0 chrX 111611698 111611807 -50988123 - FLAM_C SINE Alu -33 110 2 837 265 25 41 chrX 111612438 111612683 -50987247 + MIR SINE MIR 8 248 -14 204 237 0 26 chrX 111612853 111612929 -50987001 + CT-rich Low_complexity Low_complexity 1 74 0 23 78 0 0 chrX 111614194 111614245 -50985685 + AT_rich Low_complexity Low_complexity 1 51 0 932 331 17 11 chrX 111614333 111614680 -50985250 + L2 LINE L2 2624 2972 -342 1054 204 74 72 chrX 111614686 111615180 -50984750 + MLT1E2 LTR MaLR 1 626 0 429 361 41 48 chrX 111615200 111615516 -50984414 + L2 LINE L2 3000 3313 0 522 220 68 0 chrX 111615560 111615678 -50984252 + L2 LINE L2 3188 3313 0 * 827 234 88 21 chrX 111615671 111615910 -50984020 - MIR SINE MIR -6 256 2 785 234 38 72 chrX 111617082 111617290 -50982640 + MIR SINE MIR 7 207 -55 2351 57 0 0 chrX 111617290 111617595 -50982335 + AluY SINE Alu 1 305 0 785 234 38 72 chrX 111617595 111617650 -50982280 + MIR SINE MIR 207 262 0 583 212 113 20 chrX 111617797 111617948 -50981982 - MIR SINE MIR 0 262 98 213 343 50 45 chrX 111618021 111618219 -50981711 - L2 LINE L2 -238 3034 2836 3947 64 6 12 chrX 111618762 111618805 -50981125 + L1P LINE L1 4649 4691 -1455 7963 33 0 0 chrX 111618805 111619796 -50980134 - L1PA5 LINE L1 0 6154 5162 3947 64 6 12 chrX 111619796 111620270 -50979660 + L1PA5 LINE L1 4691 5163 -983 572 99 0 36 chrX 111620390 111620501 -50979429 + (TTCC)n Simple_repeat Simple_repeat 1 107 0 314 338 30 0 chrX 111620882 111621015 -50978915 + MIR3 SINE MIR 30 166 -42 3070 96 41 2 chrX 111621667 111622082 -50977848 - MER57B LTR ERV1 -3 431 1 1518 149 43 0 chrX 111622182 111622458 -50977472 + L1MA8 LINE L1 5999 6286 -5 318 87 0 0 chrX 111622630 111622676 -50977254 + (CA)n Simple_repeat Simple_repeat 1 46 0 1147 233 9 64 chrX 111622693 111623037 -50976893 - MER46C DNA MER2_type -6 332 8 2061 64 15 26 chrX 111623171 111623435 -50976495 - AluY SINE Alu -21 290 30 252 59 0 0 chrX 111623467 111623501 -50976429 + (TTG)n Simple_repeat Simple_repeat 1 34 0 295 256 150 72 chrX 111623804 111624124 -50975806 + L1ME4a LINE L1 5582 5926 -195 237 253 45 91 chrX 111624135 111624289 -50975641 + L1ME4a LINE L1 5969 6115 -6 2593 68 0 0 chrX 111624333 111624642 -50975288 + AluY SINE Alu 1 309 -2 1827 169 27 9 chrX 111625339 111625671 -50974259 + MER58B DNA MER1_type 4 341 0 546 256 187 36 chrX 111625728 111625978 -50973952 - Charlie8 DNA MER1_type -2129 288 31 216 209 45 30 chrX 111626193 111626260 -50973670 + L2 LINE L2 1940 2007 -1307 180 152 0 0 chrX 111626554 111626587 -50973343 + T-rich Low_complexity Low_complexity 1 33 0 1861 159 6 22 chrX 111626589 111626904 -50973026 - AluSx SINE Alu 0 312 3 1159 344 81 39 chrX 111627082 111628040 -50971890 + L2 LINE L2 2034 3020 -252 843 230 121 11 chrX 111628126 111628362 -50971568 - MIR SINE MIR 0 262 2 813 226 128 18 chrX 111628399 111628625 -50971305 + MIR SINE MIR 2 252 -10 554 260 124 16 chrX 111628718 111628893 -50971037 + MIR SINE MIR 45 240 -22 3131 174 45 6 chrX 111628893 111629422 -50970508 + MER44D DNA MER2_type 1 605 0 554 260 124 16 chrX 111629422 111629441 -50970489 + MIR SINE MIR 240 256 -6 230 217 313 0 chrX 111629579 111629662 -50970268 + L2 LINE L2 3164 3272 0 535 261 0 80 chrX 111630088 111630264 -50969666 + MER5B DNA MER1_type 7 168 -10 22 70 0 0 chrX 111630657 111630700 -50969230 + AT_rich Low_complexity Low_complexity 1 43 0 1012 154 103 123 chrX 111631216 111631574 -50968356 - MLT1B LTR MaLR -39 351 1 2736 180 35 19 chrX 111631583 111632044 -50967886 - MER70A LTR ERVL -4 468 1 300 225 128 22 chrX 111632449 111632606 -50967324 - MIR SINE MIR -12 250 72 2676 40 0 0 chrX 111632863 111633163 -50966767 + AluY SINE Alu 1 300 -11 841 176 0 0 chrX 111633186 111633317 -50966613 - FLAM_C SINE Alu -2 141 11 259 186 0 0 chrX 111633522 111633565 -50966365 - MIR SINE MIR -2 260 218 701 281 67 38 chrX 111633659 111633926 -50966004 - L3 LINE CR1 -88 1489 1215 183 352 216 5 chrX 111634607 111634806 -50965124 - L2 LINE L2 -1900 1414 1174 276 30 0 0 chrX 111634852 111634885 -50965045 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 405 244 0 12 chrX 111634887 111634969 -50964961 - L2 LINE L2 -15 3298 3218 1737 106 57 3 chrX 111635575 111635865 -50964065 + LTR54 LTR ERV1 1 333 -165 607 206 50 0 chrX 111635868 111636009 -50963921 + MER57A LTR ERV1 252 399 -4 23 33 0 0 chrX 111636234 111636264 -50963666 + AT_rich Low_complexity Low_complexity 1 30 0 393 167 13 0 chrX 111636358 111636436 -50963494 - L2 LINE L2 -754 2560 2482 231 167 0 0 chrX 111636455 111636497 -50963433 + (TA)n Simple_repeat Simple_repeat 2 43 0 4072 223 55 10 chrX 111636934 111637871 -50962059 + MER69B DNA AcHobo 242 1221 -5 361 231 120 0 chrX 111638549 111638657 -50961273 - MIR3 SINE MIR -3 205 85 4044 138 48 6 chrX 111639018 111639181 -50960749 + L1MA6 LINE L1 5620 5775 -525 216 0 0 0 chrX 111639181 111639205 -50960725 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 261 0 0 0 chrX 111639204 111639233 -50960697 + (TA)n Simple_repeat Simple_repeat 2 30 0 4044 138 48 6 chrX 111639205 111639709 -50960221 + L1MA6 LINE L1 5775 6286 -14 329 287 66 8 chrX 111639727 111639849 -50960081 + MER5A DNA MER1_type 43 171 -18 215 354 71 10 chrX 111639962 111640061 -50959869 + MIR SINE MIR 28 132 -76 * 664 282 83 58 chrX 111640052 111640176 -50959754 - L2 LINE L2 -540 2774 2655 2031 117 7 4 chrX 111640176 111640481 -50959449 + AluSq SINE Alu 1 306 0 664 282 83 58 chrX 111640481 111640703 -50959227 - L2 LINE L2 -659 2655 2418 326 320 168 41 chrX 111640758 111641270 -50958660 - L2 LINE L2 -2323 991 415 672 208 79 25 chrX 111641431 111641633 -50958297 + L1MC5 LINE L1 7719 7931 -30 2253 95 3 16 chrX 111641679 111641996 -50957934 - AluSp SINE Alu 0 313 1 204 291 13 38 chrX 111642105 111642184 -50957746 - MIR SINE MIR -99 109 33 276 260 114 32 chrX 111642321 111642444 -50957486 + L2 LINE L2 2932 3064 -208 2171 109 3 0 chrX 111643114 111643407 -50956523 - AluSg SINE Alu -16 294 1 407 260 31 0 chrX 111646332 111646428 -50953502 + MIR3 SINE MIR 81 179 -29 180 215 62 31 chrX 111647017 111647082 -50952848 + L2 LINE L2 1158 1224 -2090 557 221 0 12 chrX 111648635 111648917 -50951013 + (CAG)n Simple_repeat Simple_repeat 1 278 0 226 186 0 102 chrX 111648863 111648922 -50951008 + MER45R DNA AcHobo 336 388 -1193 70 13 0 0 chrX 111649158 111649235 -50950695 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chrX 111649663 111649684 -50950246 + AT_rich Low_complexity Low_complexity 1 21 0 2430 87 0 13 chrX 111650546 111650855 -50949075 + AluSg SINE Alu 1 305 -5 2280 116 0 0 chrX 111651273 111651575 -50948355 - AluSx SINE Alu -10 302 1 2241 124 0 0 chrX 111652399 111652697 -50947233 + AluSx SINE Alu 1 298 -14 270 0 0 0 chrX 111653078 111653108 -50946822 + (TG)n Simple_repeat Simple_repeat 1 30 0 363 236 139 68 chrX 111653609 111653846 -50946084 + MIR SINE MIR 9 262 0 683 211 0 8 chrX 111653862 111653990 -50945940 + FRAM SINE Alu 36 162 -14 201 171 24 0 chrX 111653991 111654032 -50945898 + GA-rich Low_complexity Low_complexity 5 46 0 312 365 81 34 chrX 111654948 111655329 -50944601 - L2 LINE L2 -531 2783 2385 256 194 0 81 chrX 111656121 111656183 -50943747 + MIR SINE MIR 51 107 -155 993 230 170 32 chrX 111656645 111657066 -50942864 + L1ME1 LINE L1 5710 6166 0 211 161 36 0 chrX 111657276 111657332 -50942598 + CT-rich Low_complexity Low_complexity 4 61 0 2354 95 0 0 chrX 111657394 111657690 -50942240 + AluY SINE Alu 1 296 -15 206 333 0 0 chrX 111657966 111658035 -50941895 - MIR3 SINE MIR -7 201 133 215 191 43 0 chrX 111659224 111659271 -50940659 + CT-rich Low_complexity Low_complexity 4 52 0 1867 108 0 35 chrX 111660484 111660744 -50939186 + AluSx SINE Alu 1 251 -61 211 340 13 53 chrX 111660757 111660907 -50939023 + MIR3 SINE MIR 42 185 -23 284 127 18 0 chrX 111664580 111664635 -50935295 + CT-rich Low_complexity Low_complexity 1 56 0 291 54 0 0 chrX 111664635 111664672 -50935258 + (TG)n Simple_repeat Simple_repeat 2 38 0 326 244 160 42 chrX 111664726 111664845 -50935085 + MIR SINE MIR 17 149 -59 643 192 48 41 chrX 111664890 111665036 -50934894 + MER58B DNA MER1_type 195 341 0 197 275 12 0 chrX 111665323 111665403 -50934527 + L2 LINE L2 2896 2976 -296 1071 155 8 114 chrX 111666129 111666374 -50933556 + MER20 DNA MER1_type 1 219 0 264 154 0 0 chrX 111666762 111666814 -50933116 + (CA)n Simple_repeat Simple_repeat 2 53 0 2191 123 7 0 chrX 111666885 111667193 -50932737 + AluSx SINE Alu 1 310 -2 415 149 26 26 chrX 111667196 111667310 -50932620 + GA-rich Low_complexity Low_complexity 3 116 0 189 292 0 0 chrX 111667337 111667385 -50932545 - L2 LINE L2 -3 3310 3263 384 236 38 75 chrX 111667755 111667861 -50932069 - L2 LINE L2 0 3313 3212 235 105 26 0 chrX 111668577 111668615 -50931315 + MER11C LTR ERVK 217 255 -816 2190 106 10 6 chrX 111669337 111669680 -50930250 + AluSx SINE Alu 1 312 0 214 356 0 26 chrX 111672620 111672735 -50927195 + MIR SINE MIR 30 141 -67 231 190 0 0 chrX 111673954 111674012 -50925918 + (TA)n Simple_repeat Simple_repeat 2 59 0 214 339 0 0 chrX 111674612 111674677 -50925253 + MIR SINE MIR 45 109 -99 423 0 0 0 chrX 111674757 111674804 -50925126 + (CA)n Simple_repeat Simple_repeat 2 48 0 2205 82 13 30 chrX 111675372 111675675 -50924255 + AluSc SINE Alu 1 298 -11 281 279 8 0 chrX 111675713 111675842 -50924088 + (TA)n Simple_repeat Simple_repeat 1 130 0 3151 130 20 124 chrX 111676319 111677027 -50922903 + L1MCa LINE L1 426 1059 -5367 564 264 132 20 chrX 111677532 111677729 -50922201 - MIR SINE MIR -10 252 34 215 315 22 22 chrX 111679708 111679800 -50920130 - MIR3 SINE MIR -6 202 111 2160 121 10 13 chrX 111679813 111680126 -50919804 + AluSx SINE Alu 1 312 0 225 323 50 78 chrX 111681308 111681630 -50918300 - L2 LINE L2 -1 3271 2959 241 299 85 40 chrX 111681671 111681848 -50918082 - L2 LINE L2 -429 2885 2701 2443 90 3 0 chrX 111683378 111683689 -50916241 + AluSp SINE Alu 2 313 0 390 146 0 0 chrX 111684929 111685011 -50914919 + (CTG)n Simple_repeat Simple_repeat 1 82 0 491 272 89 28 chrX 111685962 111686142 -50913788 - MIR3 SINE MIR -8 200 10 290 275 130 0 chrX 111686510 111686625 -50913305 + MIR SINE MIR 15 131 -77 247 259 12 35 chrX 111688581 111688666 -50911264 + (CA)n Simple_repeat Simple_repeat 1 83 0 219 242 0 0 chrX 111694382 111694444 -50905486 + (CA)n Simple_repeat Simple_repeat 1 62 0 209 237 42 102 chrX 111695138 111695256 -50904674 - L2 LINE L2 -10 3303 3193 2211 124 3 0 chrX 111696237 111696543 -50903387 - AluSx SINE Alu -5 307 1 862 278 28 0 chrX 111697623 111697871 -50902059 + MIR SINE MIR 8 262 0 261 278 67 33 chrX 111698005 111698095 -50901835 - MIR3 SINE MIR -10 198 106 2230 124 138 5 chrX 111698578 111698956 -50900974 + MSTA LTR MaLR 1 428 0 287 188 141 0 chrX 111699501 111699586 -50900344 - L1ME4a LINE L1 -69 6052 5956 844 279 55 7 chrX 111699619 111699909 -50900021 - L1ME4a LINE L1 -218 5903 5600 316 270 126 9 chrX 111700767 111700832 -50899098 - L2 LINE L2 -9 3263 3207 414 0 0 0 chrX 111700832 111700878 -50899052 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 316 270 126 9 chrX 111700878 111700923 -50899007 - L2 LINE L2 -65 3207 3140 276 220 17 0 chrX 111701089 111701148 -50898782 - L2 LINE L2 -1059 2255 2196 327 336 16 25 chrX 111701469 111701591 -50898339 + L2 LINE L2 3150 3270 -2 231 298 38 103 chrX 111701714 111701924 -50898006 - MIR SINE MIR -50 212 21 272 298 65 32 chrX 111704552 111704676 -50895254 - MIR SINE MIR -106 156 29 2161 108 10 3 chrX 111704973 111705270 -50894660 - AluSq SINE Alu -14 299 1 201 147 0 0 chrX 111706875 111706909 -50893021 + (T)n Simple_repeat Simple_repeat 1 34 0 253 315 105 28 chrX 111707828 111707971 -50891959 - L3b LINE CR1 -10 1573 1420 255 133 0 0 chrX 111709278 111709323 -50890607 + (CCA)n Simple_repeat Simple_repeat 3 47 0 334 302 42 60 chrX 111711437 111711652 -50888278 + MIR SINE MIR 1 211 -51 1842 122 4 0 chrX 111712645 111712899 -50887031 + AluSx SINE Alu 1 255 -57 926 101 22 0 chrX 111712899 111713038 -50886892 + AluSg/x SINE Alu 169 310 0 280 292 32 39 chrX 111713201 111713355 -50886575 - L1MC4a LINE L1 -1918 5890 5738 786 179 0 0 chrX 111713366 111713483 -50886447 + FLAM_A SINE Alu 8 124 -18 1947 133 23 0 chrX 111714557 111714865 -50885065 + L1MB4 LINE L1 5854 6168 -12 303 71 0 0 chrX 111714865 111714907 -50885023 + (CA)n Simple_repeat Simple_repeat 1 42 0 476 193 61 18 chrX 111715010 111715124 -50884806 - Charlie8 DNA MER1_type -2236 181 63 224 57 0 29 chrX 111715682 111715717 -50884213 + (CA)n Simple_repeat Simple_repeat 1 34 0 634 301 57 10 chrX 111716629 111716860 -50883070 + MIR SINE MIR 9 246 -16 412 302 124 30 chrX 111717018 111717187 -50882743 + MIR SINE MIR 16 200 -62 2328 94 3 3 chrX 111717285 111717583 -50882347 - AluSq SINE Alu -15 298 1 266 277 19 90 chrX 111717868 111718023 -50881907 + L2 LINE L2 2910 3053 -219 34 42 0 0 chrX 111718109 111718157 -50881773 + AT_rich Low_complexity Low_complexity 1 48 0 277 250 0 18 chrX 111718277 111718333 -50881597 + L3 LINE CR1 1502 1556 -21 278 271 102 42 chrX 111718691 111718809 -50881121 + MIR SINE MIR 8 132 -130 * 507 278 32 8 chrX 111718807 111718933 -50880997 - L2 LINE L2 0 3313 3185 397 307 22 36 chrX 111719840 111719977 -50879953 + L2 LINE L2 3137 3271 -1 1017 73 0 0 chrX 111720094 111720217 -50879713 - AluSg SINE Alu -187 123 1 32 0 0 0 chrX 111720353 111720385 -50879545 + AT_rich Low_complexity Low_complexity 1 32 0 349 233 12 23 chrX 111720646 111720732 -50879198 + MIR SINE MIR 68 152 -110 315 0 0 0 chrX 111721880 111721915 -50878015 + (TG)n Simple_repeat Simple_repeat 2 36 0 555 195 127 17 chrX 111721919 111722037 -50877893 + MER58C DNA MER1_type 84 214 -1 76 12 0 0 chrX 111722891 111722974 -50876956 + AT_rich Low_complexity Low_complexity 1 83 0 191 211 0 0 chrX 111723065 111723103 -50876827 + L2 LINE L2 3270 3307 -6 278 345 18 36 chrX 111723113 111723306 -50876624 - L2 LINE L2 -292 2980 2791 3929 119 213 129 chrX 111723524 111724806 -50875124 - pTR5 LTR ERV1 0 2438 743 332 287 115 0 chrX 111725111 111725233 -50874697 + L2 LINE L2 2223 2358 -956 1711 157 17 14 chrX 111725269 111725563 -50874367 + 7SLRNA srpRNA srpRNA 22 316 -4 309 325 82 76 chrX 111725846 111726315 -50873615 + L2 LINE L2 2712 3191 -81 521 265 7 30 chrX 111727157 111727308 -50872622 + MIR3 SINE MIR 2 142 -117 2463 42 0 48 chrX 111727308 111727620 -50872310 + AluY SINE Alu 1 297 -14 521 265 7 30 chrX 111727620 111727673 -50872257 + MIR3 SINE MIR 142 195 -64 333 257 92 28 chrX 111728509 111728618 -50871312 + L2 LINE L2 3149 3264 -8 1736 182 57 86 chrX 111728634 111729111 -50870819 - MLT1C LTR MaLR -1 466 4 1419 245 174 18 chrX 111729736 111730172 -50869758 - MLT1D LTR MaLR 0 505 2 378 0 0 0 chrX 111730173 111730215 -50869715 + (TG)n Simple_repeat Simple_repeat 2 43 0 1225 229 33 0 chrX 111730458 111730703 -50869227 - MIR SINE MIR -2 260 8 1484 255 31 35 chrX 111730750 111731237 -50868693 + L1MC4 LINE L1 7572 7785 0 2183 122 0 3 chrX 111731326 111731629 -50868301 - AluSx SINE Alu -10 302 1 732 225 104 31 chrX 111731659 111731881 -50868049 - MIR SINE MIR -8 254 17 2240 83 0 20 chrX 111732285 111732586 -50867344 + AluY SINE Alu 1 295 -16 213 65 0 0 chrX 111732944 111732975 -50866955 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2049 66 8 12 chrX 111732978 111733235 -50866695 - AluSg SINE Alu -26 284 29 21 0 0 0 chrX 111733239 111733260 -50866670 + AT_rich Low_complexity Low_complexity 1 21 0 954 214 6 0 chrX 111733489 111733662 -50866268 - MER5B DNA MER1_type -4 174 1 193 263 0 35 chrX 111733884 111733941 -50865989 + L2 LINE L2 3217 3271 -1 283 347 34 14 chrX 111734098 111734245 -50865685 - L2 LINE L2 -1038 2276 2127 1742 69 17 13 chrX 111736364 111736596 -50863334 + L1PA8 LINE L1 5939 6171 -1 494 277 136 65 chrX 111736964 111737454 -50862476 - L2 LINE L2 0 3272 2745 32 0 0 0 chrX 111737560 111737592 -50862338 + AT_rich Low_complexity Low_complexity 1 32 0 1553 177 23 20 chrX 111737594 111737893 -50862037 - L1MB2 LINE L1 -6 6165 5866 203 240 160 40 chrX 111738022 111738097 -50861833 - MIR SINE MIR -6 256 173 337 192 60 108 chrX 111738407 111738531 -50861399 - MER103 DNA DNA 0 166 50 1664 188 3 16 chrX 111738531 111738840 -50861090 - AluJo SINE Alu -7 305 1 337 192 60 108 chrX 111738840 111738882 -50861048 - MER103 DNA DNA -116 50 8 468 0 0 0 chrX 111738911 111738963 -50860967 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 240 337 20 20 chrX 111739687 111739785 -50860145 + MIR3 SINE MIR 9 106 -102 2461 71 0 0 chrX 111739933 111740228 -50859702 + AluY SINE Alu 1 295 -16 21 36 0 0 chrX 111740249 111740277 -50859653 + AT_rich Low_complexity Low_complexity 1 28 0 738 314 71 36 chrX 111740996 111741407 -50858523 + MLT1K LTR MaLR 141 565 -23 750 310 106 13 chrX 111742455 111742852 -50857078 + MLT1J2 LTR MaLR 17 450 0 364 287 81 11 chrX 111742861 111743035 -50856895 + L2 LINE L2 3124 3309 -4 2573 54 0 16 chrX 111743122 111743436 -50856494 - AluY SINE Alu -2 309 1 412 305 31 8 chrX 111745601 111745729 -50854201 + MIR SINE MIR 76 206 -56 312 341 67 17 chrX 111747786 111747965 -50851965 - MIR3 SINE MIR -5 203 16 1344 221 157 6 chrX 111748860 111749185 -50850745 + MLT1A2 LTR MaLR 1 374 0 406 276 17 17 chrX 111749193 111749309 -50850621 + L2 LINE L2 3198 3313 0 624 248 22 74 chrX 111750289 111750451 -50849479 + MIR SINE MIR 45 193 -69 2186 106 0 0 chrX 111750451 111750744 -50849186 - AluSx SINE Alu -19 293 1 624 248 22 74 chrX 111750744 111750811 -50849119 + MIR SINE MIR 193 262 0 22 0 0 0 chrX 111750811 111750833 -50849097 + AT_rich Low_complexity Low_complexity 1 22 0 504 35 26 61 chrX 111750979 111751093 -50848837 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 2249 86 30 0 chrX 111751097 111751399 -50848531 - AluSq SINE Alu -2 311 1 217 323 82 20 chrX 111751424 111751619 -50848311 - L2 LINE L2 -1059 2255 2049 1006 189 0 37 chrX 111751675 111751865 -50848065 - AluJb SINE Alu -23 289 107 1790 55 21 0 chrX 111751869 111752104 -50847826 + L1PA13 LINE L1 5924 6163 0 207 162 0 0 chrX 111752381 111752418 -50847512 + CT-rich Low_complexity Low_complexity 4 40 0 2098 138 3 0 chrX 111752424 111752728 -50847202 - AluSx SINE Alu -7 305 1 2282 99 0 13 chrX 111753960 111754129 -50845801 - AluSg SINE Alu -10 300 135 2316 85 0 13 chrX 111754129 111754436 -50845494 - AluY SINE Alu -8 303 1 2282 99 0 13 chrX 111754436 111754570 -50845360 - AluSg SINE Alu -175 135 1 2225 74 3 3 chrX 111756523 111756840 -50843090 + AluSg SINE Alu 1 310 0 212 147 0 0 chrX 111756951 111756985 -50842945 + (TC)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chrX 111756987 111757012 -50842918 + (TG)n Simple_repeat Simple_repeat 1 25 0 1762 162 7 0 chrX 111757049 111757327 -50842603 - AluSx SINE Alu -32 280 1 256 286 0 0 chrX 111757840 111757903 -50842027 - L2 LINE L2 -1 3312 3250 183 278 78 93 chrX 111758266 111758536 -50841394 + L3 LINE CR1 1260 1525 -52 277 205 13 13 chrX 111758799 111758877 -50841053 + T-rich Low_complexity Low_complexity 5 82 0 2528 78 0 0 chrX 111760234 111760542 -50839388 - AluSx SINE Alu -4 308 1 208 306 0 0 chrX 111760626 111760675 -50839255 - L2 LINE L2 -15 3257 3209 21 0 0 0 chrX 111761583 111761604 -50838326 + AT_rich Low_complexity Low_complexity 1 21 0 3437 158 5 3 chrX 111761943 111762544 -50837386 + L1MB2 LINE L1 5554 6155 -16 358 262 35 21 chrX 111762569 111762714 -50837216 - MER103 DNA DNA -18 148 2 2093 87 4 8 chrX 111762935 111763200 -50836730 + AluSq SINE Alu 26 289 -24 295 263 116 11 chrX 111763277 111763372 -50836558 - MER5B DNA MER1_type 0 178 74 867 271 35 16 chrX 111764361 111764616 -50835314 + MIR SINE MIR 3 262 0 30 45 0 0 chrX 111764839 111764883 -50835047 + AT_rich Low_complexity Low_complexity 1 44 0 392 298 10 0 chrX 111765526 111765630 -50834300 - L2 LINE L2 0 3272 3168 429 274 132 10 chrX 111765875 111766079 -50833851 - MLT1L LTR MaLR -82 533 305 503 264 60 66 chrX 111766322 111766414 -50833516 + MIR SINE MIR 72 164 -98 2400 72 3 0 chrX 111766414 111766719 -50833211 + AluY SINE Alu 1 306 -5 503 264 60 66 chrX 111766719 111766808 -50833122 + MIR SINE MIR 164 252 -10 502 301 97 9 chrX 111767335 111767551 -50832379 + MIR SINE MIR 28 262 0 2474 66 0 3 chrX 111767598 111767902 -50832028 + AluY SINE Alu 1 303 -8 2041 111 9 46 chrX 111767968 111768292 -50831638 + AluSx SINE Alu 1 312 0 352 108 0 54 chrX 111768292 111768366 -50831564 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 188 349 83 0 chrX 111768367 111768476 -50831454 - MIR3 SINE MIR -78 130 13 342 326 0 0 chrX 111768736 111768831 -50831099 + L2 LINE L2 3219 3313 0 2317 40 25 0 chrX 111768844 111769143 -50830787 - AluY SINE Alu 0 306 1 1304 101 0 0 chrX 111769144 111769312 -50830618 - AluSx SINE Alu -10 302 135 2263 116 0 0 chrX 111769315 111769608 -50830322 - AluSx SINE Alu -19 293 1 2156 115 7 3 chrX 111769808 111770113 -50829817 - AluSg SINE Alu -4 306 1 448 188 0 0 chrX 111770421 111770501 -50829429 + MER5A DNA MER1_type 1 80 -109 1084 93 0 0 chrX 111770559 111770698 -50829232 - AluSx SINE Alu -174 139 1 424 304 37 22 chrX 111771319 111771454 -50828476 - L2 LINE L2 -20 3252 3116 1178 224 120 11 chrX 111772419 111772768 -50827162 + MSTD LTR MaLR 1 387 -9 6246 156 89 40 chrX 111772823 111774976 -50824954 + L1MC/D LINE L1 12 2423 -4003 2009 157 105 32 chrX 111774971 111775041 -50824889 + L1MC/D LINE L1 5473 5536 -1077 * 2373 101 0 0 chrX 111775041 111775339 -50824591 + AluSx SINE Alu 1 298 -14 2009 157 105 32 chrX 111775339 111775414 -50824516 + L1MC/D LINE L1 5536 5604 -1009 2038 141 0 3 chrX 111775414 111775711 -50824219 + AluSx SINE Alu 1 296 -16 2009 157 105 32 chrX 111775711 111776112 -50823818 + L1MC/D LINE L1 5604 6055 -558 186 325 157 0 chrX 111776370 111776453 -50823477 - L2 LINE L2 -34 3238 3143 366 183 70 21 chrX 111776723 111776865 -50823065 + L1MC5 LINE L1 7609 7757 -204 1988 136 10 3 chrX 111776865 111777160 -50822770 + AluSx SINE Alu 2 298 -14 212 154 0 26 chrX 111777160 111777199 -50822731 + GA-rich Low_complexity Low_complexity 1 38 0 269 262 28 19 chrX 111777276 111777383 -50822547 + L1MC5 LINE L1 7806 7913 -48 241 78 0 39 chrX 111778071 111778122 -50821808 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 2140 80 23 27 chrX 111778276 111778575 -50821355 - AluSq SINE Alu -15 298 1 4945 161 52 12 chrX 111778809 111779849 -50820081 - L1MC3 LINE L1 -8 7777 6697 364 296 106 61 chrX 111779863 111779895 -50820035 + L2 LINE L2 2077 2106 -1208 1179 166 28 14 chrX 111779895 111780106 -50819824 - MER20 DNA MER1_type -4 215 2 364 296 106 61 chrX 111780106 111780337 -50819593 + L2 LINE L2 2106 2352 -962 1261 198 41 50 chrX 111780484 111780571 -50819359 + MER58B DNA MER1_type 2 88 -2332 947 128 0 0 chrX 111780571 111780704 -50819226 - FLAM_C SINE Alu 0 133 1 1261 198 41 50 chrX 111780704 111780959 -50818971 + MER58B DNA MER1_type 88 341 0 236 306 93 27 chrX 111781035 111781218 -50818712 - LTR40b LTR ERVL -133 329 135 682 361 44 6 chrX 111781425 111781741 -50818189 + L2 LINE L2 2395 2722 -592 580 233 134 35 chrX 111781868 111782070 -50817860 - MIR SINE MIR 0 262 41 2076 146 3 0 chrX 111782084 111782392 -50817538 - AluSx SINE Alu -3 309 1 746 220 44 6 chrX 111782908 111783090 -50816840 + MER5A DNA MER1_type 1 189 0 372 51 17 0 chrX 111783711 111783770 -50816160 - Tigger3(Golem) DNA MER2_type -2769 260 201 17976 50 2 1 chrX 111783770 111786832 -50813098 - L1PA6 LINE L1 0 6154 3090 288 53 0 0 chrX 111788162 111788200 -50811730 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1897 112 41 0 chrX 111788200 111788345 -50811585 - AluSx SINE Alu -32 280 142 180 0 0 0 chrX 111788345 111788365 -50811565 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1897 112 41 0 chrX 111788365 111788487 -50811443 - AluSx SINE Alu -170 142 2 286 274 84 0 chrX 111788518 111788613 -50811317 + U6 snRNA snRNA 1 103 -4 394 284 44 25 chrX 111788659 111788863 -50811067 + L1M4 LINE L1 4022 4229 -1917 539 299 144 22 chrX 111788965 111789325 -50810605 + L1M4 LINE L1 4383 4785 -1361 2368 36 40 23 chrX 111789325 111789626 -50810304 - AluY SINE Alu -5 306 1 539 299 144 22 chrX 111789626 111789675 -50810255 + L1M4 LINE L1 4785 4827 -1319 951 305 80 41 chrX 111790604 111791121 -50808809 - L2 LINE L2 -2 3311 2779 1015 166 24 6 chrX 111791128 111791297 -50808633 + FRAM SINE Alu 1 166 -10 352 320 48 16 chrX 111791303 111791428 -50808502 - L2 LINE L2 -540 2774 2646 1296 168 53 80 chrX 111791988 111792287 -50807643 - MSTA LTR MaLR 0 452 188 20704 41 3 0 chrX 111792287 111795620 -50804310 - L1PA5 LINE L1 -6 6148 2810 1296 168 53 80 chrX 111795620 111795804 -50804126 - MSTA LTR MaLR -264 188 1 7107 168 13 14 chrX 111796013 111796611 -50803319 + L1PA11 LINE L1 3797 4394 -1780 273 57 0 0 chrX 111796611 111796646 -50803284 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 7107 168 13 14 chrX 111796646 111798617 -50801313 + L1PA11 LINE L1 4394 6018 -156 2387 94 0 0 chrX 111798267 111798566 -50801364 + AluSg SINE Alu 1 299 -11 2334 92 0 33 chrX 111798566 111798770 -50801160 + L1PB1 LINE L1 5978 6166 0 181 250 60 95 chrX 111799985 111800069 -50799861 + MIR SINE MIR 26 106 -102 1855 187 6 8 chrX 111800281 111800639 -50799291 + MLT1A1 LTR MaLR 9 365 0 2320 262 107 78 chrX 111802868 111803150 -50796780 - HAL1 LINE L1 -778 1729 1457 2627 48 0 3 chrX 111803150 111803462 -50796468 - AluY SINE Alu 0 311 1 2320 262 107 78 chrX 111803462 111804775 -50795155 - HAL1 LINE L1 -1050 1457 80 2224 106 0 0 chrX 111804775 111805078 -50794852 + AluSx SINE Alu 1 303 0 2320 262 107 78 chrX 111805078 111805161 -50794769 - HAL1 LINE L1 -2427 80 1 238 295 32 32 chrX 111805506 111805662 -50794268 - L1MC/D LINE L1 -2022 5786 5631 1753 185 27 14 chrX 111805722 111805894 -50794036 - AluJo SINE Alu -16 296 117 186 43 0 0 chrX 111805894 111805917 -50794013 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1753 185 27 14 chrX 111805917 111806036 -50793894 - AluJo SINE Alu -195 117 1 342 0 0 0 chrX 111806047 111806085 -50793845 + (TA)n Simple_repeat Simple_repeat 2 39 0 1958 156 0 0 chrX 111806091 111806373 -50793557 + AluSx SINE Alu 1 282 -30 1321 185 40 116 chrX 111806441 111806863 -50793067 + L1MDa LINE L1 18 407 -6133 815 174 0 0 chrX 111806863 111806984 -50792946 + AluJb SINE Alu 1 121 -191 597 205 0 0 chrX 111806984 111807111 -50792819 + (TATG)n Simple_repeat Simple_repeat 2 128 0 530 219 0 0 chrX 111807111 111807207 -50792723 + FRAM SINE Alu 1 93 -83 1599 65 0 0 chrX 111807207 111807406 -50792524 + L1PA8 LINE L1 5960 6158 -14 6588 118 29 15 chrX 111807406 111807729 -50792201 + L1MA1 LINE L1 4372 4689 -1613 354 23 0 0 chrX 111807729 111807772 -50792158 + (CA)n Simple_repeat Simple_repeat 2 44 0 6588 118 29 15 chrX 111807772 111809356 -50790574 + L1MA1 LINE L1 4689 6302 0 27 62 0 0 chrX 111809694 111809742 -50790188 + AT_rich Low_complexity Low_complexity 1 48 0 442 280 45 55 chrX 111809866 111810066 -50789864 + MIR SINE MIR 23 220 -42 1662 149 0 60 chrX 111811107 111811432 -50788498 + AluJb SINE Alu 1 307 0 228 220 0 51 chrX 111811856 111811915 -50788015 + MIR SINE MIR 114 169 -93 627 233 41 70 chrX 111812140 111812410 -50787520 - MIR SINE MIR 0 262 1 186 133 0 0 chrX 111812797 111812827 -50787103 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 259 282 0 14 chrX 111813018 111813089 -50786841 + CT-rich Low_complexity Low_complexity 1 70 0 2404 36 0 0 chrX 111813361 111813806 -50786124 - AluY SINE Alu 0 445 1 2626 45 0 3 chrX 111814133 111814444 -50785486 + AluY SINE Alu 1 310 -1 290 332 64 32 chrX 111815640 111815827 -50784103 + MER117 DNA MER1_type 5 197 0 1755 155 22 4 chrX 111816202 111816479 -50783451 - AluSx SINE Alu -30 282 1 767 236 6 24 chrX 111817389 111817554 -50782376 - MIR3 SINE MIR -17 191 30 528 314 77 62 chrX 111818250 111818703 -50781227 - L2 LINE L2 0 3272 2813 339 301 131 19 chrX 111818806 111819012 -50780918 + MIR SINE MIR 12 240 -22 250 183 0 70 chrX 111819029 111819100 -50780830 + CT-rich Low_complexity Low_complexity 2 67 0 880 337 104 38 chrX 111819745 111820377 -50779553 - L3 LINE CR1 -2 1575 902 294 351 14 14 chrX 111820399 111820547 -50779383 - L3 LINE CR1 -804 773 626 225 359 43 8 chrX 111820749 111820866 -50779064 - L3 LINE CR1 -1012 565 445 732 167 8 0 chrX 111821381 111821513 -50778417 + MIR SINE MIR 117 249 -13 284 200 27 27 chrX 111821784 111821859 -50778071 - MIR SINE MIR -80 182 108 915 101 22 22 chrX 111823785 111823964 -50775966 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 205 253 12 12 chrX 111823972 111824055 -50775875 + CT-rich Low_complexity Low_complexity 1 83 0 191 172 0 0 chrX 111824233 111824262 -50775668 + L2 LINE L2 3261 3289 -24 2139 137 0 3 chrX 111824279 111824592 -50775338 - AluSx SINE Alu 0 312 1 252 195 24 24 chrX 111824728 111824810 -50775120 - HAL1b LINE L1 -3 1345 1264 376 272 211 0 chrX 111824830 111824944 -50774986 + MIR SINE MIR 121 258 -4 201 203 14 101 chrX 111825205 111825274 -50774656 + MIR3 SINE MIR 145 207 -1 186 71 0 0 chrX 111825473 111825501 -50774429 + (T)n Simple_repeat Simple_repeat 1 28 0 2184 124 3 0 chrX 111825712 111826010 -50773920 + AluSq SINE Alu 1 299 -14 195 42 0 0 chrX 111826096 111826120 -50773810 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 888 222 6 125 chrX 111826355 111826378 -50773552 - AluSx SINE Alu -30 282 258 1696 158 44 70 chrX 111826378 111826763 -50773167 + THE1C LTR MaLR 1 375 0 888 222 6 125 chrX 111826763 111827059 -50772871 - AluSx SINE Alu -54 258 1 416 307 33 66 chrX 111827092 111827304 -50772626 + L2 LINE L2 2847 3051 -221 196 240 0 20 chrX 111827963 111828013 -50771917 + L2 LINE L2 3169 3217 -55 * 312 280 54 0 chrX 111828006 111828099 -50771831 + MIR SINE MIR 155 252 -10 441 0 0 0 chrX 111828099 111828148 -50771782 + (TG)n Simple_repeat Simple_repeat 2 50 0 1815 148 3 14 chrX 111828150 111828433 -50771497 - AluSx SINE Alu -32 280 1 369 329 38 19 chrX 111828529 111828687 -50771243 + MIR3 SINE MIR 25 185 -23 188 35 35 0 chrX 111828742 111828771 -50771159 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 300 299 96 21 chrX 111829496 111829651 -50770279 - L2 LINE L2 -7 3306 3133 1940 128 0 10 chrX 111829651 111829947 -50769983 + AluJb SINE Alu 3 295 -17 300 299 96 21 chrX 111829947 111829978 -50769952 - L2 LINE L2 -180 3133 3106 1080 310 124 60 chrX 111830295 111831662 -50768268 - L2 LINE L2 -15 3257 1791 189 0 0 0 chrX 111832045 111832066 -50767864 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 556 230 0 9 chrX 111832691 111832804 -50767126 + L2 LINE L2 3193 3304 -9 2354 81 0 3 chrX 111833130 111833427 -50766503 - AluY SINE Alu -14 297 2 948 335 142 25 chrX 111833992 111835092 -50764838 + L2 LINE L2 1992 3224 -89 410 229 38 119 chrX 111835217 111835427 -50764503 + MLT1J1 LTR MaLR 114 306 -140 407 258 21 0 chrX 111835539 111835632 -50764298 + L2 LINE L2 3173 3267 -5 300 27 0 0 chrX 111836147 111836184 -50763746 + (TG)n Simple_repeat Simple_repeat 2 38 0 2535 153 64 120 chrX 111836209 111836912 -50763018 - MER39 LTR ERV1 -3 704 1 524 284 68 42 chrX 111837718 111837954 -50761976 - MIR SINE MIR 0 262 21 305 290 47 114 chrX 111837957 111838150 -50761780 + L2 LINE L2 3022 3201 -71 191 279 98 0 chrX 111838154 111838215 -50761715 + MIR SINE MIR 87 153 -55 848 243 24 35 chrX 111838221 111838476 -50761454 - MER102b DNA MER1_type 0 341 90 2195 113 10 0 chrX 111838719 111839010 -50760920 + AluSx SINE Alu 1 294 -18 21 36 0 0 chrX 111839160 111839188 -50760742 + AT_rich Low_complexity Low_complexity 1 28 0 219 279 29 15 chrX 111839742 111839810 -50760120 + L3b LINE CR1 1414 1482 -101 197 255 0 0 chrX 111840438 111840485 -50759445 + L2 LINE L2 3214 3260 -12 2222 100 0 7 chrX 111840596 111840895 -50759035 + AluSq SINE Alu 1 297 -16 2244 99 10 0 chrX 111841474 111841767 -50758163 + AluSx SINE Alu 1 296 -16 443 283 21 60 chrX 111841783 111841974 -50757956 + MIR SINE MIR 5 187 -75 2528 46 0 10 chrX 111841974 111842279 -50757651 - AluY SINE Alu -9 302 1 443 283 21 60 chrX 111842279 111842320 -50757610 + MIR SINE MIR 187 228 -34 2255 99 3 0 chrX 111842846 111843172 -50756758 + AluSx SINE Alu 1 327 0 370 294 40 32 chrX 111843352 111843478 -50756452 + MIR3 SINE MIR 81 207 -1 268 313 45 35 chrX 111844686 111844884 -50755046 - L2 LINE L2 -2408 906 707 384 298 107 0 chrX 111844903 111845024 -50754906 - L2 LINE L2 -1 3312 3179 408 271 43 29 chrX 111845190 111845330 -50754600 - MIR SINE MIR -98 164 23 255 306 72 80 chrX 111845379 111845752 -50754178 + L1ME LINE L1 70 439 -5631 1673 201 26 10 chrX 111845907 111846291 -50753639 - L1MB7 LINE L1 -17 6167 5778 1926 266 78 36 chrX 111846298 111847623 -50752307 + L1ME LINE L1 477 1923 -4157 557 80 0 0 chrX 111847623 111847698 -50752232 + MADE1 DNA Mariner 4 78 -2 1926 266 78 36 chrX 111847698 111848319 -50751611 + L1ME LINE L1 1923 2516 -3564 1263 216 101 0 chrX 111848333 111848708 -50751222 + L1ME LINE L1 2584 2996 -3084 3040 150 39 24 chrX 111848716 111848850 -50751080 - L1MB1 LINE L1 -260 5908 5777 2442 84 0 7 chrX 111848850 111849158 -50750772 - AluSx SINE Alu -6 306 1 3040 150 39 24 chrX 111849158 111849638 -50750292 - L1MB1 LINE L1 -391 5777 5285 346 262 84 21 chrX 111849636 111849827 -50750103 - L1MB7 LINE L1 -346 5775 5573 * 1777 293 146 30 chrX 111849832 111850490 -50749440 + L2 LINE L2 1990 2570 -743 807 178 0 0 chrX 111850490 111850619 -50749311 + FLAM_C SINE Alu 1 129 -4 1777 293 146 30 chrX 111850619 111851037 -50748893 + L2 LINE L2 2570 3246 -67 1577 191 45 10 chrX 111851082 111851396 -50748534 + MLT1A1 LTR MaLR 1 325 -40 1937 161 6 29 chrX 111851396 111851712 -50748218 + AluJb SINE Alu 1 309 -3 414 122 14 0 chrX 111851729 111851803 -50748127 + HsTC2 DNA Tc2 1823 1897 -1 2050 121 7 0 chrX 111851832 111852150 -50747780 - AluSx SINE Alu 0 320 1 274 285 104 113 chrX 111852627 111852848 -50747082 - MIR SINE MIR -11 251 33 296 327 0 10 chrX 111854042 111854146 -50745784 - MIR SINE MIR -86 176 74 996 190 15 29 chrX 111855285 111855490 -50744440 - AluJ SINE Alu -3 309 108 2373 90 0 0 chrX 111855494 111855795 -50744135 + AluSq SINE Alu 1 301 -12 189 147 0 0 chrX 111855795 111855829 -50744101 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 264 59 0 0 chrX 111855856 111855890 -50744040 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 806 135 0 0 chrX 111855893 111856004 -50743926 - AluJ SINE Alu -201 111 1 1672 216 59 11 chrX 111856849 111857321 -50742609 + L1ME1 LINE L1 5667 6161 -5 21 0 0 0 chrX 111857441 111857462 -50742468 + AT_rich Low_complexity Low_complexity 1 21 0 2056 98 0 0 chrX 111857564 111857828 -50742102 - AluSq SINE Alu -49 264 1 772 147 23 16 chrX 111858043 111858172 -50741758 + AluJb SINE Alu 5 134 -178 1591 151 86 37 chrX 111858175 111858525 -50741405 - THE1C LTR MaLR 0 375 9 442 203 44 70 chrX 111858669 111858827 -50741103 + MER103 DNA DNA 3 156 -10 215 348 43 58 chrX 111859263 111859401 -50740529 - L2 LINE L2 0 3272 3137 863 171 27 0 chrX 111859621 111859767 -50740163 - FRAM SINE Alu -9 167 18 24 32 0 0 chrX 111859922 111859953 -50739977 + AT_rich Low_complexity Low_complexity 1 31 0 231 304 98 29 chrX 111859953 111860055 -50739875 + L2 LINE L2 3193 3301 -12 1146 149 0 70 chrX 111860076 111860231 -50739699 - AluJo SINE Alu -27 285 148 1484 126 5 0 chrX 111860231 111860437 -50739493 - AluSg/x SINE Alu -21 291 85 1146 149 0 70 chrX 111860437 111860496 -50739434 - AluJo SINE Alu -164 148 86 805 159 7 40 chrX 111860989 111861140 -50738790 + FRAM SINE Alu 9 154 -22 2209 115 0 3 chrX 111861797 111862101 -50737829 - AluSx SINE Alu -8 304 2 1824 150 31 0 chrX 111862422 111862708 -50737222 - AluJo SINE Alu -17 295 1 1421 168 67 42 chrX 111863292 111863602 -50736328 - AluJo SINE Alu 0 312 1 394 276 146 53 chrX 111863852 111863899 -50736031 - L2 LINE L2 -505 2809 2768 2317 96 0 0 chrX 111863899 111864191 -50735739 - AluSx SINE Alu -20 292 1 394 276 146 53 chrX 111864191 111864465 -50735465 - L2 LINE L2 -546 2768 2458 477 269 37 78 chrX 111864608 111864651 -50735279 - L2 LINE L2 -27 3286 3243 1385 157 74 60 chrX 111864651 111865071 -50734859 + LTR37A LTR ERV1 1 426 0 477 269 37 78 chrX 111865071 111865295 -50734635 - L2 LINE L2 -70 3243 3030 2046 102 7 20 chrX 111865458 111865753 -50734177 - AluSx SINE Alu -11 301 11 410 279 84 16 chrX 111868070 111868260 -50731670 + MIR SINE MIR 52 254 -8 2441 97 0 0 chrX 111868458 111868766 -50731164 + AluSg SINE Alu 1 308 -2 4507 144 17 18 chrX 111869174 111869777 -50730153 - L1MB4 LINE L1 0 6180 5577 2433 100 0 0 chrX 111869777 111870088 -50729842 - AluSx SINE Alu -1 311 1 4507 144 17 18 chrX 111870088 111870363 -50729567 - L1MB4 LINE L1 -603 5577 5303 564 147 0 55 chrX 111870406 111870515 -50729415 - U13 snRNA snRNA -1 103 1 2136 111 3 13 chrX 111870971 111871269 -50728661 + AluSx SINE Alu 1 295 -17 21 81 0 14 chrX 111871538 111871578 -50728352 + AT_rich Low_complexity Low_complexity 1 41 -32 2094 120 3 0 chrX 111871578 111871861 -50728069 + AluSx SINE Alu 1 284 -28 21 81 0 14 chrX 111871861 111871894 -50728036 + AT_rich Low_complexity Low_complexity 41 73 0 315 122 0 0 chrX 111872207 111872256 -50727674 + (T)n Simple_repeat Simple_repeat 1 49 0 24 0 0 0 chrX 111872665 111872689 -50727241 + AT_rich Low_complexity Low_complexity 1 24 0 2118 122 7 0 chrX 111872694 111872989 -50726941 - AluSx SINE Alu -2 310 14 27 0 0 0 chrX 111873106 111873133 -50726797 + AT_rich Low_complexity Low_complexity 1 27 0 1048 256 116 6 chrX 111873860 111874196 -50725734 + MLT1H1 LTR MaLR 175 547 -8 258 321 81 103 chrX 111874201 111874472 -50725458 + L2 LINE L2 2983 3247 -25 325 313 205 6 chrX 111874484 111874650 -50725280 - L3 LINE CR1 -5 1572 1374 341 329 44 61 chrX 111874958 111875186 -50724744 + MIR SINE MIR 22 245 -17 195 129 0 0 chrX 111875237 111875268 -50724662 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 186 103 0 0 chrX 111875777 111875806 -50724124 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 707 145 0 119 chrX 111876033 111876192 -50723738 - FLAM_A SINE Alu -2 140 1 226 329 66 0 chrX 111876550 111876626 -50723304 + L2 LINE L2 3174 3254 -18 2399 93 0 6 chrX 111876716 111877027 -50722903 + AluSg SINE Alu 2 310 0 194 309 12 25 chrX 111878009 111878090 -50721840 + MIR SINE MIR 19 98 -110 2062 161 0 0 chrX 111879940 111880250 -50719680 - AluSx SINE Alu 0 312 3 354 194 0 0 chrX 111880827 111880899 -50719031 + (CCCTAA)n Simple_repeat Simple_repeat 5 76 0 273 241 0 0 chrX 111881017 111881096 -50718834 + L1M4 LINE L1 3676 3754 -2392 801 212 7 7 chrX 111881113 111881264 -50718666 + MER8 DNA MER2_type 8 158 -81 208 130 26 39 chrX 111881440 111881517 -50718413 + (TA)n Simple_repeat Simple_repeat 1 76 0 1994 137 7 3 chrX 111881517 111881809 -50718121 - AluSq SINE Alu -20 293 1 436 147 172 80 chrX 111882130 111882293 -50717637 - MER5B DNA MER1_type 0 178 1 270 105 0 0 chrX 111882303 111882341 -50717589 - tRNA-Gln-CAG tRNA tRNA -37 38 1 2039 122 0 17 chrX 111882377 111882672 -50717258 - AluSx SINE Alu -22 290 1 313 65 0 22 chrX 111882959 111883005 -50716925 + (GA)n Simple_repeat Simple_repeat 1 45 0 616 190 22 17 chrX 111883007 111883186 -50716744 + GA-rich Low_complexity Low_complexity 1 180 0 1365 179 43 36 chrX 111883264 111883543 -50716387 - AluJo SINE Alu -31 281 1 246 254 0 34 chrX 111884054 111884113 -50715817 - L2 LINE L2 -16 3256 3200 2268 97 3 0 chrX 111884581 111884879 -50715051 - AluSx SINE Alu -13 299 1 501 291 57 19 chrX 111885638 111885954 -50713976 - L1ME4a LINE L1 -209 5912 5585 883 266 41 112 chrX 111886079 111886799 -50713131 + L1MEd LINE L1 215 985 -5144 330 115 0 0 chrX 111886799 111886851 -50713079 + (CA)n Simple_repeat Simple_repeat 1 52 0 883 266 41 112 chrX 111886851 111887191 -50712739 + L1MEd LINE L1 985 1183 -4946 1583 220 19 14 chrX 111887191 111887554 -50712376 + MLT1A1 LTR MaLR 1 365 0 883 266 41 112 chrX 111887554 111887654 -50712276 + L1MEd LINE L1 1183 1289 -4840 581 299 64 28 chrX 111888028 111888696 -50711234 + L1MEd LINE L1 2739 3430 -2699 1213 225 3 25 chrX 111888696 111888981 -50710949 + MLT1B LTR MaLR 112 390 0 2524 245 51 14 chrX 111888983 111889055 -50710875 + L1M4 LINE L1 2450 2518 -3628 1478 182 13 75 chrX 111889055 111889373 -50710557 - AluJo SINE Alu -14 298 1 2524 245 51 14 chrX 111889373 111890242 -50709688 + L1M4 LINE L1 2518 3426 -2720 3542 196 56 75 chrX 111890260 111891739 -50708191 + L1MCb LINE L1 7 1507 -5057 837 78 9 0 chrX 111891739 111891854 -50708076 + L1PB2 LINE L1 6033 6148 -3 3542 196 56 75 chrX 111891854 111892711 -50707219 + L1MCb LINE L1 1507 2379 -4185 985 209 50 59 chrX 111892717 111892771 -50707159 - MLT2B1 LTR ERVL -8 512 459 2423 78 0 3 chrX 111892771 111893067 -50706863 + AluSq SINE Alu 1 295 -18 985 209 50 59 chrX 111893067 111893480 -50706450 - MLT2B1 LTR ERVL -61 459 1 820 177 36 23 chrX 111893480 111893700 -50706230 + L1MCb LINE L1 2388 2610 -3954 3293 88 2 32 chrX 111893700 111893813 -50706117 + L1PB1 LINE L1 5668 5783 -368 390 42 0 0 chrX 111893813 111893861 -50706069 + (TG)n Simple_repeat Simple_repeat 2 49 0 3293 88 2 32 chrX 111893861 111893877 -50706053 + L1PB1 LINE L1 5783 5798 -353 207 0 0 0 chrX 111893877 111893900 -50706030 + (CA)n Simple_repeat Simple_repeat 2 24 0 3293 88 2 32 chrX 111893900 111894267 -50705663 + L1PB1 LINE L1 5798 6150 -1 449 236 70 0 chrX 111894295 111894452 -50705478 + L1MCb LINE L1 2595 2762 -3802 347 121 33 11 chrX 111894453 111894544 -50705386 + (TA)n Simple_repeat Simple_repeat 1 93 0 1752 181 0 0 chrX 111894546 111894834 -50705096 - AluJo SINE Alu -18 294 7 2400 247 30 8 chrX 111894853 111895631 -50704299 + L1MCb LINE L1 2752 3546 -3018 2012 206 7 2 chrX 111895643 111896084 -50703846 + L1MCb LINE L1 4010 4452 -2112 6048 84 15 44 chrX 111896094 111896812 -50703118 - L1MA2 LINE L1 0 7723 7039 1833 143 0 17 chrX 111896812 111897099 -50702831 - AluJb SINE Alu -30 282 1 6048 84 15 44 chrX 111897099 111897361 -50702569 - L1MA2 LINE L1 -684 7039 6771 2184 139 0 13 chrX 111897382 111897698 -50702232 - AluSx SINE Alu 0 312 1 2130 135 10 0 chrX 111897779 111898082 -50701848 - AluSq SINE Alu -7 306 1 5857 184 20 7 chrX 111898082 111899385 -50700545 - L1MA2 LINE L1 -775 6790 5471 3868 78 17 0 chrX 111899387 111899970 -50699960 + L1PA10 LINE L1 5599 6190 0 18255 172 52 22 chrX 111899982 111901819 -50698111 - L1MA2 LINE L1 -2079 5486 3705 2062 131 7 0 chrX 111901819 111902102 -50697828 + AluSx SINE Alu 1 315 0 217 67 0 0 chrX 111902102 111902132 -50697798 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 18255 172 52 22 chrX 111902132 111905567 -50694363 - L1MA2 LINE L1 -3860 3705 12 841 190 11 5 chrX 111905560 111905744 -50694186 - L1M4 LINE L1 -2529 3617 3433 * 4664 163 39 8 chrX 111905759 111906638 -50693292 - L1MC2 LINE L1 0 6344 5439 2345 94 0 0 chrX 111906664 111906961 -50692969 - AluSg SINE Alu -9 301 5 934 96 64 0 chrX 111907691 111907816 -50692114 - AluSq/x SINE Alu -179 133 1 24 0 0 0 chrX 111907820 111907844 -50692086 + AT_rich Low_complexity Low_complexity 1 24 0 2344 264 50 44 chrX 111908282 111908417 -50691513 + L2 LINE L2 1909 2042 -1272 221 0 0 33 chrX 111908417 111908447 -50691483 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2344 264 50 44 chrX 111908447 111908578 -50691352 + L2 LINE L2 2042 2171 -1143 1971 142 0 13 chrX 111908578 111908880 -50691050 - AluSg SINE Alu -12 298 1 2344 264 50 44 chrX 111908880 111909390 -50690540 + L2 LINE L2 2171 2694 -620 1226 195 66 79 chrX 111909390 111909769 -50690161 + MLT1A2 LTR MaLR 1 374 0 2344 264 50 44 chrX 111909769 111909806 -50690124 + L2 LINE L2 2694 2729 -585 266 143 0 0 chrX 111909806 111909848 -50690082 + FLAM SINE Alu 81 122 -11 819 169 28 0 chrX 111910001 111910143 -50689787 - FRAM SINE Alu -33 143 1 308 213 181 55 chrX 111910201 111910328 -50689602 + L2 LINE L2 3171 3313 0 1001 62 16 0 chrX 111910512 111910641 -50689289 - L1PA10 LINE L1 -4 6164 6034 21 57 0 0 chrX 111910932 111910967 -50688963 + AT_rich Low_complexity Low_complexity 1 35 0 6742 197 91 35 chrX 111910968 111913544 -50686386 - L1MA3 LINE L1 -1 7723 4618 782 185 0 0 chrX 111913544 111913679 -50686251 - AluJb SINE Alu -6 306 172 6742 197 91 35 chrX 111913679 111914758 -50685172 - L1MA3 LINE L1 -3106 4618 3601 819 168 8 0 chrX 111914758 111914889 -50685041 - AluJb SINE Alu -17 295 164 7511 117 31 15 chrX 111914891 111916174 -50683756 - L1MA3 LINE L1 -3957 3608 2305 228 321 0 37 chrX 111916262 111916343 -50683587 - L2 LINE L2 -181 3091 3014 23 0 0 0 chrX 111917579 111917602 -50682328 + AT_rich Low_complexity Low_complexity 1 23 0 12658 171 81 14 chrX 111919216 111923139 -50676791 + L1MA2 LINE L1 15 6219 -1346 320 145 65 16 chrX 111923139 111923186 -50676744 - MSTA LTR MaLR 0 428 376 5400 101 17 26 chrX 111923186 111923868 -50676062 + L1MA2 LINE L1 6890 7565 -158 1887 84 25 0 chrX 111923868 111924157 -50675773 + AluSc SINE Alu 38 332 0 5400 101 17 26 chrX 111924157 111924315 -50675615 + L1MA2 LINE L1 7565 7723 0 320 145 65 16 chrX 111924315 111924329 -50675601 - MSTA LTR MaLR -52 376 364 186 171 0 0 chrX 111924798 111924839 -50675091 + GA-rich Low_complexity Low_complexity 1 41 0 264 85 21 0 chrX 111926679 111926726 -50673204 - Alu SINE Alu 0 302 255 1994 133 0 7 chrX 111926918 111927218 -50672712 - AluSx SINE Alu -4 308 11 2442 221 72 31 chrX 111927409 111927663 -50672267 - L1ME1 LINE L1 -44 6122 5880 1243 191 19 0 chrX 111927663 111927873 -50672057 - MER20 DNA MER1_type -3 216 3 2442 221 72 31 chrX 111927873 111928783 -50671147 - L1ME1 LINE L1 -286 5880 4838 1163 261 40 5 chrX 111928790 111929185 -50670745 - L1ME1 LINE L1 -3438 2708 2300 616 145 146 0 chrX 111929185 111929315 -50670615 - MLT1F1 LTR MaLR -203 339 174 791 141 35 14 chrX 111929404 111929546 -50670384 - L1PB4 LINE L1 -2 6154 6010 461 296 56 7 chrX 111929554 111929696 -50670234 - MLT1F1 LTR MaLR -385 157 9 204 417 75 5 chrX 111929995 111930194 -50669736 + L2 LINE L2 2568 2780 -534 355 234 35 94 chrX 111930379 111930447 -50669483 - MER103 DNA DNA -2 164 94 2707 23 0 3 chrX 111930447 111930754 -50669176 + AluY SINE Alu 1 306 -5 355 234 35 94 chrX 111930754 111930856 -50669074 - MER103 DNA DNA -72 94 4 3194 107 32 6 chrX 111930867 111931390 -50668540 - L1MA3 LINE L1 0 7724 7188 1453 69 20 5 chrX 111931401 111931603 -50668327 - L1MA1 LINE L1 -39 6263 6059 9895 151 12 3 chrX 111931626 111934117 -50665813 - L1PA12 LINE L1 -2 6166 3664 22388 168 23 16 chrX 111934120 111935505 -50664425 - L1MA3 LINE L1 -524 7199 5825 1259 50 0 0 chrX 111935505 111935665 -50664265 - L1PA4 LINE L1 -2 6153 5994 22388 168 23 16 chrX 111935665 111936168 -50663762 - L1MA3 LINE L1 -1898 5825 5327 2309 88 0 0 chrX 111936168 111936452 -50663478 + AluSq SINE Alu 1 284 -29 186 43 0 0 chrX 111936455 111936478 -50663452 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 22388 168 23 16 chrX 111936478 111937501 -50662429 - L1MA3 LINE L1 -2397 5326 4312 1848 182 0 3 chrX 111937501 111937809 -50662121 - AluJb SINE Alu -5 307 1 22388 168 23 16 chrX 111937809 111939822 -50660108 - L1MA3 LINE L1 -3411 4312 2315 2060 149 0 0 chrX 111939822 111940124 -50659806 + AluSx SINE Alu 3 304 -8 22388 168 23 16 chrX 111940124 111942336 -50657594 - L1MA3 LINE L1 -5408 2315 16 359 261 37 75 chrX 111942726 111942860 -50657070 + L2 LINE L2 3136 3264 -8 205 351 142 43 chrX 111942964 111943175 -50656755 - L2 LINE L2 -212 3060 2829 24 32 0 0 chrX 111944050 111944081 -50655849 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 111944422 111944444 -50655486 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chrX 111945487 111945525 -50654405 + AT_rich Low_complexity Low_complexity 1 38 0 4799 198 30 35 chrX 111945568 111946185 -50653745 + L1MB7 LINE L1 4141 4760 -1424 1964 158 0 0 chrX 111946185 111946493 -50653437 - AluSx SINE Alu 0 308 1 4799 198 30 35 chrX 111946493 111947908 -50652022 + L1MB7 LINE L1 4760 6168 -16 336 301 101 15 chrX 111948052 111948251 -50651679 + L1M4b LINE L1 11 226 -6633 2633 248 48 40 chrX 111948300 111949173 -50650757 + L1M4b LINE L1 960 1922 -5035 * 5611 194 8 2 chrX 111949165 111950320 -50649610 + L1 LINE L1 3616 4777 -1369 2337 107 48 25 chrX 111950320 111950676 -50649254 - THE1B LTR MaLR 0 364 1 2049 76 4 0 chrX 111950676 111950940 -50648990 - THE1B-int LTR MaLR 0 1580 1316 409 287 0 0 chrX 111950940 111951076 -50648854 - L1MDa LINE L1 -5079 1461 1326 2470 107 11 3 chrX 111951089 111951455 -50648475 - L1PB1 LINE L1 -1 6150 5782 238 250 11 11 chrX 111951469 111951557 -50648373 - L1MC4 LINE L1 -1339 6703 6616 333 296 0 0 chrX 111951584 111951672 -50648258 + L1MC4 LINE L1 6615 6702 -1340 3742 144 21 13 chrX 111951685 111951837 -50648093 + L1M1 LINE L1 2971 3120 -4445 2321 74 0 29 chrX 111951837 111952148 -50647782 - AluY SINE Alu -9 302 1 3742 144 21 13 chrX 111952148 111952792 -50647138 + L1M1 LINE L1 3120 3774 -3791 4247 141 18 6 chrX 111952870 111953448 -50646482 + HSMAR2 DNA Mariner 586 1176 -126 10469 191 20 5 chrX 111953448 111955182 -50644748 - L1PA13 LINE L1 0 6163 4364 288 0 0 0 chrX 111955182 111955214 -50644716 + (TG)n Simple_repeat Simple_repeat 1 32 0 10469 191 20 5 chrX 111955214 111956440 -50643490 - L1PA13 LINE L1 -1799 4364 3158 4247 141 18 6 chrX 111956440 111956569 -50643361 + HSMAR2 DNA Mariner 1176 1302 0 14527 205 39 6 chrX 111956942 111963064 -50636866 + L1PB1 LINE L1 6 6514 -353 1221 108 0 0 chrX 111963064 111963296 -50636634 + (TA)n Simple_repeat Simple_repeat 1 232 0 14527 205 39 6 chrX 111963296 111963425 -50636505 + L1PB1 LINE L1 6514 6637 -230 4947 169 39 12 chrX 111963416 111964102 -50635828 + L1MA6 LINE L1 4965 5695 -605 * 1491 205 29 0 chrX 111964102 111964400 -50635530 + AluJb SINE Alu 1 306 0 4947 169 39 12 chrX 111964400 111964903 -50635027 + L1MA6 LINE L1 5695 6183 -117 361 159 72 0 chrX 111964907 111964976 -50634954 + L1M1 LINE L1 12 85 -7480 5288 120 15 11 chrX 111964977 111965833 -50634097 + L1MA2 LINE L1 5445 6304 0 570 150 18 0 chrX 111965854 111965967 -50633963 + L1MA6 LINE L1 6186 6300 0 1528 161 3 7 chrX 111966169 111966454 -50633476 - L1MA5 LINE L1 -2 6298 6015 1723 156 43 33 chrX 111966795 111967135 -50632795 + AluJb SINE Alu 6 348 0 530 141 111 0 chrX 111967140 111967239 -50632691 - MLT2C2 LTR ERVL -63 401 292 904 217 5 5 chrX 111967240 111967438 -50632492 + L1P LINE L1 4881 5078 -1068 1140 224 16 8 chrX 111967445 111967699 -50632231 - MLT2C2 LTR ERVL -205 259 4 203 204 19 0 chrX 111967948 111968002 -50631928 + T-rich Low_complexity Low_complexity 2 56 0 2041 146 3 0 chrX 111968010 111968340 -50631590 - L1PA16 LINE L1 -9 6860 6530 14084 233 24 6 chrX 111968345 111972491 -50627439 - L1PA16 LINE L1 -504 6365 2150 2431 86 0 3 chrX 111972491 111972804 -50627126 - AluSx SINE Alu 0 312 1 1787 105 11 21 chrX 111972804 111973090 -50626840 - L1PA16 LINE L1 -4810 2039 1757 911 291 66 39 chrX 111974399 111974914 -50625016 - MER34 LTR ERV1 -13 529 1 725 213 53 0 chrX 111976289 111976439 -50623491 + FAM SINE Alu 1 158 -17 487 246 175 0 chrX 111976601 111976784 -50623146 + MIR SINE MIR 48 262 0 1699 189 154 30 chrX 111976884 111977345 -50622585 - Charlie1b DNA MER1_type 0 523 6 1217 301 40 9 chrX 111977606 111978034 -50621896 + L2 LINE L2 1810 2250 -1064 3154 55 46 16 chrX 111978104 111978539 -50621391 - LTR7 LTR ERV1 -2 448 1 2587 71 45 13 chrX 111978539 111978919 -50621011 - HERVH LTR ERV1 0 7713 7322 1422 117 19 0 chrX 111978917 111979131 -50620799 - HERVH LTR ERV1 -1894 5819 5602 * 4562 125 0 1 chrX 111979134 111979797 -50620133 - HERVH LTR ERV1 -2564 5149 4488 3523 90 4 10 chrX 111979791 111980303 -50619627 - HERVH LTR ERV1 -3713 4000 3492 * 924 128 20 0 chrX 111980293 111980441 -50619489 - HERVH LTR ERV1 -4423 3290 3140 * 18944 101 37 19 chrX 111980435 111983368 -50616562 - HERVH LTR ERV1 -4726 2987 1 3339 59 23 7 chrX 111983370 111983811 -50616119 - LTR7 LTR ERV1 -2 448 1 1231 259 77 19 chrX 111983814 111984514 -50615416 + L1ME3A LINE L1 4738 5482 -682 180 77 0 0 chrX 111984514 111984540 -50615390 + (CAA)n Simple_repeat Simple_repeat 1 26 0 1231 259 77 19 chrX 111984540 111984579 -50615351 + L1ME3A LINE L1 5482 5517 -647 485 117 13 0 chrX 111984620 111984697 -50615233 - MSTD LTR MaLR -2 394 317 1391 187 76 58 chrX 111984886 111985229 -50614701 - MSTD LTR MaLR -47 349 1 3937 163 9 22 chrX 111985283 111985969 -50613961 - MER44D DNA MER2_type -27 678 2 1109 237 164 5 chrX 111985972 111986386 -50613544 + L1ME3A LINE L1 5590 6069 -101 984 279 81 7 chrX 111986390 111986688 -50613242 + L2 LINE L2 2430 2749 -565 356 242 15 23 chrX 111986716 111986848 -50613082 + L1MC5 LINE L1 7094 7224 -737 4240 104 60 0 chrX 111986852 111987468 -50612462 - MER39B LTR ERV1 0 653 1 583 264 64 40 chrX 111987838 111988213 -50611717 + L1MC5 LINE L1 7546 7929 -32 581 290 71 42 chrX 111988214 111988497 -50611433 + L2 LINE L2 2742 3033 -280 1500 202 7 7 chrX 111988497 111988784 -50611146 + AluJb SINE Alu 1 287 -25 581 290 71 42 chrX 111988784 111988822 -50611108 + L2 LINE L2 3033 3068 -245 1931 195 2 18 chrX 111989737 111990131 -50609799 + L1MB1 LINE L1 5720 6107 -61 3069 52 3 5 chrX 111990142 111990530 -50609400 + L1PA7 LINE L1 5768 6154 0 232 333 16 0 chrX 111990731 111990794 -50609136 - L2 LINE L2 -1 3271 3208 2125 151 57 25 chrX 111991788 111992224 -50607706 - LTR7 LTR ERV1 0 450 1 24 53 0 0 chrX 111992830 111992868 -50607062 + AT_rich Low_complexity Low_complexity 1 38 0 252 372 21 21 chrX 111992931 111993076 -50606854 + L2 LINE L2 3125 3269 -3 21 0 0 0 chrX 111993287 111993308 -50606622 + AT_rich Low_complexity Low_complexity 1 21 0 222 274 164 0 chrX 111993808 111993881 -50606049 + MER91A DNA MER1_type 112 196 0 3706 121 24 3 chrX 111993891 111994472 -50605458 - LTR49 LTR ERV1 0 595 3 291 191 127 9 chrX 111995229 111995339 -50604591 - L1ME4a LINE L1 -108 6013 5891 742 128 25 4 chrX 111995354 111995613 -50604317 + CT-rich Low_complexity Low_complexity 1 264 0 749 207 0 15 chrX 111995613 111995748 -50604182 - FLAM_A SINE Alu 0 133 1 1932 171 116 86 chrX 111995803 111996405 -50603525 - LTR48 LTR ERV1 -2 785 166 254 143 0 82 chrX 111996407 111996456 -50603474 - LTR48B LTR ERV1 -599 45 1 1058 249 279 19 chrX 111996692 111997211 -50602719 - MLT1E1 LTR MaLR 0 654 1 285 255 113 9 chrX 111997241 111997347 -50602583 - L1ME4a LINE L1 -469 5652 5536 417 260 41 32 chrX 111997382 111997505 -50602425 + L2 LINE L2 3190 3313 0 653 146 0 0 chrX 111997830 111997926 -50602004 - FRAM SINE Alu -15 161 66 3626 202 26 38 chrX 111998085 111998529 -50601401 - L1ME1 LINE L1 -49 6117 5669 2378 64 3 0 chrX 111998529 111998824 -50601106 - AluY SINE Alu -9 302 7 3626 202 26 38 chrX 111998824 111999300 -50600630 - L1ME1 LINE L1 -497 5669 5220 203 387 0 0 chrX 111999324 111999399 -50600531 - L2 LINE L2 -44 3228 3154 251 384 53 30 chrX 111999752 111999885 -50600045 + MER5A DNA MER1_type 43 178 -11 426 300 34 74 chrX 112000648 112000842 -50599088 - MLT1J2 LTR MaLR -2 448 277 1111 226 0 13 chrX 112000842 112001068 -50598862 + MER58A DNA MER1_type 2 224 0 426 300 34 74 chrX 112001068 112001280 -50598650 - MLT1J2 LTR MaLR -173 277 58 492 270 125 32 chrX 112001645 112001896 -50598034 + MIR SINE MIR 2 262 0 22 35 0 0 chrX 112002454 112002483 -50597447 + AT_rich Low_complexity Low_complexity 1 29 0 1143 221 81 26 chrX 112003028 112003203 -50596727 + MLT1F1 LTR MaLR 11 175 -392 471 18 0 0 chrX 112003203 112003259 -50596671 + (TC)n Simple_repeat Simple_repeat 1 56 0 1143 221 81 26 chrX 112003259 112003568 -50596362 + MLT1F1 LTR MaLR 175 567 0 22 0 0 0 chrX 112003668 112003690 -50596240 + AT_rich Low_complexity Low_complexity 1 22 0 2233 147 37 3 chrX 112003742 112004116 -50595814 - MER4D LTR ERV1 0 903 517 4307 147 11 24 chrX 112004119 112004839 -50595091 - MER50 LTR ERV1 -23 711 1 2714 157 48 12 chrX 112004841 112005338 -50594592 - MER4D LTR ERV1 -388 515 1 493 294 62 31 chrX 112005338 112005532 -50594398 - MIR SINE MIR -53 209 10 1997 126 161 13 chrX 112005661 112006034 -50593896 - MSTA LTR MaLR 0 428 1 1656 225 45 30 chrX 112006642 112007082 -50592848 + MER20B DNA MER1_type 63 509 -274 2531 152 65 0 chrX 112007106 112007535 -50592395 - MSTB2 LTR MaLR 0 457 1 226 204 20 0 chrX 112007647 112007696 -50592234 + MER20B DNA MER1_type 515 564 -219 1870 124 187 11 chrX 112007696 112008060 -50591870 - MSTA LTR MaLR 0 428 1 6474 125 41 18 chrX 112008060 112009082 -50590848 - MSTA-int LTR MaLR 0 1580 535 709 236 15 5 chrX 112009085 112009280 -50590650 + MER20B DNA MER1_type 587 783 0 257 325 8 48 chrX 112009292 112009324 -50590606 + MER5A DNA MER1_type 35 67 -122 1761 155 46 49 chrX 112009324 112009673 -50590257 + MER7A DNA MER2_type 1 346 0 257 325 8 48 chrX 112009673 112009766 -50590164 + MER5A DNA MER1_type 67 155 -34 1322 196 0 0 chrX 112009771 112010026 -50589904 - L1 LINE L1 -867 5279 5025 725 167 22 39 chrX 112010037 112010217 -50589713 + L1MA10 LINE L1 6158 6334 0 2523 56 0 25 chrX 112010348 112010667 -50589263 - AluY SINE Alu 0 311 1 1462 164 0 105 chrX 112010676 112010999 -50588931 - AluJo SINE Alu -20 292 4 195 42 0 0 chrX 112011044 112011068 -50588862 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 10134 23 9 6 chrX 112011099 112013087 -50586843 - L1PA4 LINE L1 -3 6152 4160 332 352 178 28 chrX 112013093 112013965 -50585965 + L2 LINE L2 1640 2642 -672 642 317 44 8 chrX 112013985 112014234 -50585696 + MIR SINE MIR 5 262 0 2097 131 3 0 chrX 112016226 112016532 -50583398 + AluSx SINE Alu 1 307 -5 212 322 0 35 chrX 112016650 112016737 -50583193 - L2 LINE L2 -1123 2191 2108 207 239 42 28 chrX 112016836 112016907 -50583023 - MIR SINE MIR -138 124 53 373 263 37 102 chrX 112017679 112017997 -50581933 + L1M4 LINE L1 5121 5420 -701 2166 118 0 16 chrX 112018120 112018426 -50581504 + AluSx SINE Alu 1 301 -11 338 293 0 0 chrX 112018886 112018968 -50580962 - Zaphod DNA AcHobo 0 4031 3950 1308 229 32 0 chrX 112019078 112019423 -50580507 - Zaphod DNA AcHobo -77 3954 3599 269 148 197 28 chrX 112019410 112019552 -50580378 - Zaphod DNA AcHobo -3019 1012 847 * 1480 238 79 14 chrX 112019709 112020075 -50579855 - Zaphod DNA AcHobo -3373 658 269 1527 276 38 13 chrX 112020075 112020524 -50579406 - LTR16B LTR ERVL 0 464 5 1377 209 15 12 chrX 112020525 112020851 -50579079 + L1MD2 LINE L1 4520 4846 -1300 259 163 0 0 chrX 112020855 112020898 -50579032 + MLT1A1 LTR MaLR 1 43 -322 2185 118 28 52 chrX 112020911 112021335 -50578595 - L1MA8 LINE L1 0 6291 5878 1775 169 10 13 chrX 112021336 112021644 -50578286 + MLT1A1 LTR MaLR 29 335 -30 2601 226 66 22 chrX 112021654 112021834 -50578096 + L1MD2 LINE L1 4850 5021 -1163 756 309 5 5 chrX 112021834 112022057 -50577873 + MER58A DNA MER1_type 2 224 0 2601 226 66 22 chrX 112022057 112023104 -50576826 + L1MD2 LINE L1 5021 6182 -2 12503 189 78 3 chrX 112023125 112028099 -50571831 - L1PBa LINE L1 -1479 5383 35 3316 174 29 27 chrX 112028131 112028304 -50571626 - L1PB3 LINE L1 -217 5937 5766 7750 147 16 8 chrX 112028304 112030420 -50569510 - L1PA11 LINE L1 -8 6166 4023 3316 174 29 27 chrX 112030420 112031512 -50568418 - L1PB3 LINE L1 -388 5766 4673 2207 200 4 0 chrX 112031507 112031958 -50567972 - L1P LINE L1 -811 5335 4883 * 289 254 42 0 chrX 112033363 112033434 -50566496 + MIR SINE MIR 59 132 -130 260 319 86 37 chrX 112034115 112034278 -50565652 + MLT1J LTR MaLR 1 171 -340 326 239 102 42 chrX 112034399 112034566 -50565364 + MLT1J LTR MaLR 335 511 0 2461 94 0 0 chrX 112035240 112035548 -50564382 - AluSx SINE Alu -3 309 2 545 179 94 0 chrX 112036050 112036156 -50563774 + L2 LINE L2 2404 2519 -795 * 781 345 21 0 chrX 112036153 112036478 -50563452 - L2 LINE L2 -752 2562 2231 494 326 49 23 chrX 112036688 112037038 -50562892 - L1ME3A LINE L1 -305 5934 5576 353 256 140 59 chrX 112037055 112037805 -50562125 - L1ME3A LINE L1 -2105 4110 3277 2026 140 0 19 chrX 112037805 112038113 -50561817 - AluSx SINE Alu -8 304 3 353 256 140 59 chrX 112038113 112038241 -50561689 - L1ME3A LINE L1 -2938 3277 3161 1952 141 3 32 chrX 112038465 112038777 -50561153 - AluSx SINE Alu -9 303 1 2153 236 39 31 chrX 112038809 112039355 -50560575 - MER74A LTR ERVL -8 550 1 233 269 76 18 chrX 112039500 112039671 -50560259 - L1ME3A LINE L1 -3090 3125 2945 26 0 0 0 chrX 112039710 112039736 -50560194 + AT_rich Low_complexity Low_complexity 1 26 0 510 324 37 25 chrX 112039924 112040165 -50559765 - HAL1 LINE L1 -861 1646 1403 35 24 0 0 chrX 112040165 112040207 -50559723 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 112040255 112040285 -50559645 + AT_rich Low_complexity Low_complexity 1 30 0 2053 185 8 3 chrX 112040319 112040675 -50559255 - L1M1 LINE L1 -6139 1426 1069 254 333 0 0 chrX 112040711 112040822 -50559108 - L1ME LINE L1 -289 5881 5771 870 258 80 78 chrX 112040823 112041300 -50558630 + Charlie7 DNA MER1_type 256 733 -1879 1819 160 0 3 chrX 112041300 112041582 -50558348 + AluJo SINE Alu 1 281 -31 343 150 68 61 chrX 112041698 112041845 -50558085 + Charlie7 DNA MER1_type 2432 2579 -33 1705 197 57 41 chrX 112041845 112042274 -50557656 + MLT2B3 LTR ERVL 1 514 -40 213 163 23 0 chrX 112042274 112042317 -50557613 + (TA)n Simple_repeat Simple_repeat 2 45 0 472 109 0 63 chrX 112042334 112042508 -50557422 + (TA)n Simple_repeat Simple_repeat 2 164 0 313 149 0 27 chrX 112042535 112042609 -50557321 + (TA)n Simple_repeat Simple_repeat 2 73 0 361 100 0 0 chrX 112042617 112042667 -50557263 + MLT2B3 LTR ERVL 469 518 -2 243 279 38 25 chrX 112042913 112042992 -50556938 + L2 LINE L2 2992 3071 -201 448 313 15 19 chrX 112043368 112043627 -50556303 - L1ME3A LINE L1 -4727 1669 1412 303 287 0 0 chrX 112043713 112043800 -50556130 - L1ME3A LINE L1 -6027 178 92 189 386 10 20 chrX 112043854 112043955 -50555975 + L2 LINE L2 3163 3262 -10 1753 198 127 21 chrX 112043989 112044367 -50555563 + MER47B DNA MER2_type 1 418 0 1564 148 56 94 chrX 112045518 112045984 -50553946 - LTR7 LTR ERV1 -2 448 1 7611 96 57 4 chrX 112045984 112047110 -50552820 - HERVH LTR ERV1 0 7713 6529 4373 82 2 0 chrX 112047083 112047691 -50552239 - HERVH LTR ERV1 -1333 6380 5772 * 1283 99 0 6 chrX 112047690 112047871 -50552059 - HERVH LTR ERV1 -3046 4667 4488 * 3408 109 0 6 chrX 112047873 112048378 -50551552 - HERVH LTR ERV1 -3720 3993 3492 976 120 7 0 chrX 112048368 112048518 -50551412 - HERVH LTR ERV1 -4423 3290 3140 * 8581 99 2 16 chrX 112048497 112049771 -50550159 - HERVH LTR ERV1 -4718 2995 1740 656 121 0 99 chrX 112049803 112049944 -50549986 - LTR7 LTR ERV1 -323 127 1 877 353 22 46 chrX 112051868 112052284 -50547646 - L2 LINE L2 -3 3269 2864 4002 176 31 12 chrX 112052304 112053104 -50546826 + L1MA9 LINE L1 5461 6275 -37 4611 148 23 47 chrX 112053123 112054051 -50545879 + L1MC1 LINE L1 5429 6333 0 6543 193 13 3 chrX 112054185 112056349 -50543581 - L1PA14 LINE L1 -2 7597 5412 2109 111 3 3 chrX 112056369 112056722 -50543208 - L1PA14 LINE L1 -4670 2911 2559 1043 168 20 0 chrX 112056769 112056966 -50542964 + L1PA15-16 LINE L1 2486 2686 -4163 1041 150 69 5 chrX 112056963 112057238 -50542692 + L1PA12 LINE L1 2906 3202 -4382 * 15544 147 17 7 chrX 112057237 112059658 -50540272 - L1PA12 LINE L1 -5038 2543 94 2015 141 27 29 chrX 112059658 112060034 -50539896 + THE1C LTR MaLR 1 375 0 15544 147 17 7 chrX 112060034 112060129 -50539801 - L1PA12 LINE L1 -7487 94 1 4025 208 47 8 chrX 112060594 112062375 -50537555 + L1MB5 LINE L1 4315 6174 0 32 0 0 0 chrX 112062376 112062408 -50537522 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chrX 112062593 112062631 -50537299 + AT_rich Low_complexity Low_complexity 1 38 0 2081 84 4 0 chrX 112062999 112063262 -50536668 + AluY SINE Alu 27 290 -21 21 0 0 0 chrX 112063287 112063308 -50536622 + AT_rich Low_complexity Low_complexity 1 21 0 222 389 44 9 chrX 112063313 112063426 -50536504 - L2 LINE L2 -15 3257 3141 1859 166 60 65 chrX 112063846 112064311 -50535619 + MLT1C LTR MaLR 4 466 -1 502 189 10 6 chrX 112064622 112064741 -50535189 + MSTD LTR MaLR 292 621 -5 751 214 0 0 chrX 112064755 112064900 -50535030 + MLT1B LTR MaLR 246 390 0 4091 226 36 71 chrX 112064902 112066317 -50533613 - L1M4 LINE L1 -5175 1367 2 412 302 19 5 chrX 112066316 112066528 -50533402 - L1M4 LINE L1 -3315 2831 2617 * 13482 128 6 7 chrX 112066535 112069488 -50530442 - L1PA10 LINE L1 -3 6165 3205 2755 175 0 83 chrX 112120261 112120972 -50478958 + L1MA4 LINE L1 4797 5451 -743 296 0 0 0 chrX 112120972 112121005 -50478925 + U2 snRNA snRNA 1 33 -155 5027 139 9 6 chrX 112121005 112121357 -50478573 + L1MA4 LINE L1 5438 5787 -513 225 0 0 0 chrX 112121357 112121382 -50478548 + (CA)n Simple_repeat Simple_repeat 2 26 0 5027 139 9 6 chrX 112121382 112121877 -50478053 + L1MA4 LINE L1 5787 6288 -12 1445 179 72 4 chrX 112122017 112122316 -50477614 - AluJb SINE Alu 0 318 2 5314 182 51 94 chrX 112123083 112124141 -50475789 - L1 LINE L1 -1331 4815 3882 1212 79 56 11 chrX 112124141 112124319 -50475611 - L1PA12 LINE L1 -15 6153 5968 5314 182 51 94 chrX 112124319 112125273 -50474657 - L1 LINE L1 -2264 3882 2889 444 358 21 5 chrX 112125754 112125947 -50473983 - MIR SINE MIR -10 252 57 4976 224 34 7 chrX 112126049 112127172 -50472758 - L1MC3 LINE L1 -997 6788 5636 3047 159 141 114 chrX 112127167 112127476 -50472454 + L1MC3 LINE L1 6785 7084 -701 * 227 312 11 11 chrX 112127476 112127569 -50472361 + MLT1F1 LTR MaLR 33 125 -442 3047 159 141 114 chrX 112127569 112128135 -50471795 + L1MC3 LINE L1 7084 7778 -7 407 296 101 6 chrX 112128695 112128854 -50471076 - MIR SINE MIR -40 222 49 1194 314 97 51 chrX 112129275 112130142 -50469788 + L2 LINE L2 2266 3167 -146 500 360 53 4 chrX 112130213 112130441 -50469489 + MIR SINE MIR 6 244 -18 425 284 9 0 chrX 112130581 112130690 -50469240 + MIR SINE MIR 114 223 -39 265 327 36 27 chrX 112130833 112130943 -50468987 - MER5A DNA MER1_type -1 188 78 207 179 26 0 chrX 112131315 112131354 -50468576 + (TG)n Simple_repeat Simple_repeat 1 40 0 2435 63 0 0 chrX 112131384 112131685 -50468245 + AluY SINE Alu 1 301 -10 349 299 71 32 chrX 112132347 112132501 -50467429 + MIR SINE MIR 11 170 -92 455 249 47 26 chrX 112132558 112132751 -50467179 + L1PBa LINE L1 89 285 -6578 * 1313 209 60 9 chrX 112132747 112133063 -50466867 + L1PBa LINE L1 605 936 -5927 658 71 0 20 chrX 112133063 112133161 -50466769 + L1PB1 LINE L1 6049 6144 -7 186 343 148 26 chrX 112133360 112133704 -50466226 - L2 LINE L2 -346 2968 2583 2253 99 0 7 chrX 112134652 112134956 -50464974 + AluSq SINE Alu 1 302 -11 2109 290 81 80 chrX 112135500 112136888 -50463042 + HAL1 LINE L1 2 1388 -1119 1786 139 4 7 chrX 112136888 112137162 -50462768 + AluSx SINE Alu 1 273 -39 2109 290 81 80 chrX 112137162 112137706 -50462224 + HAL1 LINE L1 1388 1930 -577 213 39 0 0 chrX 112137706 112137732 -50462198 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2109 290 81 80 chrX 112137732 112138014 -50461916 + HAL1 LINE L1 1930 2210 -297 425 19 19 0 chrX 112138014 112138068 -50461862 + (TG)n Simple_repeat Simple_repeat 2 56 0 2109 290 81 80 chrX 112138068 112138351 -50461579 + HAL1 LINE L1 2210 2502 -5 21 0 0 0 chrX 112138912 112138933 -50460997 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 112138988 112139010 -50460920 + AT_rich Low_complexity Low_complexity 1 22 0 1588 160 34 72 chrX 112139201 112139605 -50460325 - L1M3 LINE L1 -588 5592 5199 24 67 0 0 chrX 112139999 112140044 -50459886 + AT_rich Low_complexity Low_complexity 1 45 0 30 0 0 0 chrX 112140986 112141016 -50458914 + AT_rich Low_complexity Low_complexity 1 30 0 2502 187 42 14 chrX 112141404 112142398 -50457532 + L1M3 LINE L1 4779 5795 -373 5940 133 40 1 chrX 112142400 112143330 -50456600 - HSMAR2 DNA Mariner -1 1301 336 201 196 0 0 chrX 112143658 112143704 -50456226 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 252 343 0 0 chrX 112143946 112144019 -50455911 - L2 LINE L2 0 3272 3200 573 306 144 0 chrX 112144085 112144307 -50455623 - MIR SINE MIR -1 261 8 719 223 64 100 chrX 112145108 112145517 -50454413 + L1MC4a LINE L1 5674 6067 -1741 3808 82 57 11 chrX 112145614 112146172 -50453758 + L1PA8A LINE L1 5520 6103 -28 309 253 59 74 chrX 112146344 112146546 -50453384 + L1ME3A LINE L1 1025 1223 -4896 1607 26 21 0 chrX 112146993 112147187 -50452743 + L1PA3 LINE L1 5958 6155 0 343 181 21 0 chrX 112147189 112147283 -50452647 + L1P LINE L1 3072 3167 -2979 2317 183 6 16 chrX 112147289 112147786 -50452144 + L1P LINE L1 3380 3871 -2275 318 87 0 0 chrX 112148490 112148536 -50451394 + (TG)n Simple_repeat Simple_repeat 2 47 0 1532 157 22 0 chrX 112148784 112149051 -50450879 + L1MA5 LINE L1 6027 6299 -1 442 263 33 52 chrX 112149396 112149609 -50450321 + L1ME3A LINE L1 4623 4831 -1298 631 254 60 111 chrX 112149736 112150070 -50449860 + MLT1I LTR MaLR 75 391 -18 531 220 159 17 chrX 112150265 112150545 -50449385 + L1ME3A LINE L1 5105 5462 -691 715 231 108 5 chrX 112150581 112150776 -50449154 + MER58C DNA MER1_type 1 215 0 423 0 0 0 chrX 112150786 112150833 -50449097 + (TG)n Simple_repeat Simple_repeat 1 47 0 231 36 0 0 chrX 112150833 112150861 -50449069 + (GA)n Simple_repeat Simple_repeat 1 28 0 760 247 36 24 chrX 112150863 112151110 -50448820 + L1ME3A LINE L1 5671 5920 -233 684 333 78 33 chrX 112151228 112151692 -50448238 + L1M4 LINE L1 2354 2851 -3295 192 77 0 0 chrX 112151692 112151718 -50448212 + (TA)n Simple_repeat Simple_repeat 2 27 0 684 333 78 33 chrX 112151718 112151830 -50448100 + L1M4 LINE L1 2851 2956 -3190 228 176 120 56 chrX 112152043 112152151 -50447779 + L1MC5 LINE L1 7815 7929 -32 356 364 34 47 chrX 112152376 112152859 -50447071 + L2 LINE L2 2560 3041 -231 195 129 0 0 chrX 112153441 112153472 -50446458 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 1134 88 0 6 chrX 112154857 112155016 -50444914 - L1MA1 LINE L1 -4 6298 6141 366 333 18 36 chrX 112155032 112155200 -50444730 + L2 LINE L2 2622 2786 -528 307 303 13 0 chrX 112155367 112155443 -50444487 + L2 LINE L2 3193 3269 -44 220 393 104 36 chrX 112155495 112155910 -50444020 + L2 LINE L2 2825 3267 -5 332 275 0 14 chrX 112156413 112156482 -50443448 - Charlie8 DNA MER1_type -2349 68 1 438 318 37 33 chrX 112156663 112156877 -50443053 + MIR SINE MIR 4 218 -44 839 145 0 0 chrX 112157216 112157340 -50442590 + AluSq/x SINE Alu 1 124 -189 8936 41 3 1 chrX 112157905 112158974 -50440956 - MER11C LTR ERVK 0 1071 1 5478 151 21 22 chrX 112159100 112160324 -50439606 + L1MA4 LINE L1 5080 6300 0 566 265 13 7 chrX 112160558 112160709 -50439221 + MIR SINE MIR 2 153 -109 2051 139 48 3 chrX 112160778 112161110 -50438820 + MER7A DNA MER2_type 2 346 0 1100 144 102 0 chrX 112161152 112161339 -50438591 - MER2 DNA MER2_type -139 206 1 572 310 65 37 chrX 112161403 112161648 -50438282 - MIR SINE MIR -8 254 3 670 294 51 15 chrX 112162252 112162449 -50437481 + MIR SINE MIR 33 236 -26 6358 163 19 4 chrX 112162608 112164469 -50435461 + L1PA15 LINE L1 4106 5989 -172 537 94 12 0 chrX 112164471 112164556 -50435374 + L1PA15 LINE L1 6071 6156 -9 29 0 0 0 chrX 112164556 112164585 -50435345 + AT_rich Low_complexity Low_complexity 1 29 0 1307 197 32 36 chrX 112164988 112165297 -50434633 + MLT2D LTR ERVL 107 414 0 24 0 0 0 chrX 112165370 112165394 -50434536 + AT_rich Low_complexity Low_complexity 1 24 0 357 303 82 42 chrX 112165610 112165640 -50434290 - L1MC/D LINE L1 -468 5653 5626 197 65 32 0 chrX 112165640 112165671 -50434259 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1487 178 102 22 chrX 112165673 112165988 -50433942 - MER2 DNA MER2_type -2 342 3 357 303 82 42 chrX 112165988 112166333 -50433597 - L1MC/D LINE L1 -495 5626 5312 251 310 35 7 chrX 112166526 112166668 -50433262 - L1MC/D LINE L1 -1098 5048 4903 307 283 66 46 chrX 112166673 112166825 -50433105 - L1MC/D LINE L1 -1357 4789 4635 3963 181 54 37 chrX 112167087 112167918 -50432012 + Charlie5 DNA MER1_type 1 856 -1768 421 136 0 12 chrX 112167918 112167999 -50431931 - MADE1 DNA Mariner 0 80 1 3963 181 54 37 chrX 112167999 112168246 -50431684 + Charlie5 DNA MER1_type 856 1097 -1527 1705 291 66 24 chrX 112168294 112168868 -50431062 + L1M4c LINE L1 470 1067 -5236 2597 87 0 8 chrX 112168876 112169244 -50430686 - L1MA3 LINE L1 -356 5949 5585 968 252 31 18 chrX 112169244 112169530 -50430400 + L1M4c LINE L1 1483 1772 -4612 3553 48 2 2 chrX 112169555 112169994 -50429936 + L1PA7 LINE L1 5681 6119 -35 16021 26 0 0 chrX 112170094 112172621 -50427309 + L1PA2 LINE L1 3480 6006 -149 557 254 221 57 chrX 112172749 112173138 -50426792 + L2 LINE L2 2857 3309 -4 252 0 0 0 chrX 112173572 112173600 -50426330 + (CA)n Simple_repeat Simple_repeat 1 28 0 504 227 166 65 chrX 112174465 112174694 -50425236 - MIR SINE MIR 0 262 11 5269 44 9 0 chrX 112175312 112175972 -50423958 - L1P LINE L1 -5479 667 2 5948 224 11 13 chrX 112175977 112177403 -50422527 - L1PA12 LINE L1 -3049 4535 3113 * 9338 179 11 8 chrX 112177390 112179135 -50420795 - L1PA12 LINE L1 -4805 2776 487 2509 177 5 0 chrX 112179765 112180161 -50419769 - L1PA12 LINE L1 -7082 499 102 334 343 108 0 chrX 112181259 112181361 -50418569 - L2 LINE L2 -18 3254 3142 1699 134 6 88 chrX 112181705 112182033 -50417897 + AluSq SINE Alu 3 303 -10 1845 162 0 7 chrX 112184295 112184592 -50415338 - AluJo SINE Alu -17 295 1 243 93 139 0 chrX 112185059 112185102 -50414828 + LTR1 LTR ERV1 1 49 -736 4114 113 41 101 chrX 112185107 112185942 -50413988 + LTR1 LTR ERV1 1 785 0 439 378 71 41 chrX 112186344 112186781 -50413149 - L2 LINE L2 -563 2751 2302 1133 225 9 102 chrX 112187488 112187821 -50412109 - AluJb SINE Alu 0 302 1 209 180 20 0 chrX 112188164 112188214 -50411716 + (CATA)n Simple_repeat Simple_repeat 4 54 0 608 337 178 22 chrX 112189306 112189840 -50410090 + L3 LINE CR1 915 1531 -46 24 53 0 0 chrX 112190380 112190418 -50409512 + AT_rich Low_complexity Low_complexity 1 38 0 211 135 27 0 chrX 112191022 112191059 -50408871 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 376 268 41 41 chrX 112191090 112191213 -50408717 - MLT1I LTR MaLR -81 328 206 1600 236 21 58 chrX 112191638 112192122 -50407808 - L1ME3A LINE L1 -6 6164 5699 376 240 0 0 chrX 112192123 112192198 -50407732 + MER69 DNA AcHobo 1 75 -2451 1392 138 20 4 chrX 112192279 112192526 -50407404 - L1MA2 LINE L1 -6 6298 6048 * 9731 96 4 0 chrX 112192522 112194639 -50405291 - L1PA8A LINE L1 -3 6128 3997 3147 124 4 6 chrX 112194642 112195164 -50404766 + L1P LINE L1 2656 3176 -2970 17850 183 49 32 chrX 112195175 112199531 -50400399 - L1 LINE L1 -3496 4069 17 1113 250 73 31 chrX 112199758 112200495 -50399435 - L1ME3A LINE L1 -467 5703 4942 575 288 50 7 chrX 112200597 112200878 -50399052 - L1ME3A LINE L1 -1815 4331 4039 546 290 171 4 chrX 112200885 112201137 -50398793 + L2 LINE L2 3020 3313 0 354 357 14 28 chrX 112201240 112201383 -50398547 - MIR3 SINE MIR -44 164 24 411 41 55 82 chrX 112201503 112201612 -50398318 - AluY SINE Alu 0 320 214 2860 189 109 38 chrX 112202071 112202835 -50397095 - LTR1B LTR ERV1 0 826 9 22 0 0 0 chrX 112203275 112203297 -50396633 + AT_rich Low_complexity Low_complexity 1 22 0 1978 254 107 40 chrX 112203876 112204747 -50395183 - L1ME3A LINE L1 -69 6101 5290 7170 50 3 2 chrX 112204747 112206069 -50393861 + L1PA7 LINE L1 4834 6154 0 1978 254 107 40 chrX 112206069 112206401 -50393529 - L1ME3A LINE L1 -880 5290 4804 2212 77 44 7 chrX 112206401 112206699 -50393231 - AluSp SINE Alu -2 311 3 1978 254 107 40 chrX 112206699 112206812 -50393118 - L1ME3A LINE L1 -1366 4804 4700 347 326 0 0 chrX 112207289 112207384 -50392546 + MER5A DNA MER1_type 94 188 -1 453 255 73 12 chrX 112207393 112207567 -50392363 + MER20 DNA MER1_type 1 219 0 189 339 18 89 chrX 112207843 112208011 -50391919 - MIR SINE MIR -10 252 97 2367 92 50 34 chrX 112208079 112208437 -50391493 - THE1B LTR MaLR 0 364 1 252 254 28 0 chrX 112208531 112208602 -50391328 - MIR SINE MIR -64 144 72 3088 220 37 47 chrX 112209511 112210014 -50389916 - L1MB8 LINE L1 -16 6162 5670 4411 58 0 12 chrX 112210014 112210582 -50389348 + L1PA8 LINE L1 5612 6172 0 3088 220 37 47 chrX 112210582 112211041 -50388889 - L1MB8 LINE L1 -508 5670 5208 180 288 68 0 chrX 112211766 112211825 -50388105 - MIR SINE MIR -124 138 76 3432 199 18 12 chrX 112212594 112213337 -50386593 - L1PB3 LINE L1 -2195 3951 3205 2789 166 18 2 chrX 112213333 112215408 -50384522 + L1PB3 LINE L1 3951 6154 0 * 255 79 0 0 chrX 112215411 112215449 -50384481 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chrX 112215836 112215859 -50384071 + AT_rich Low_complexity Low_complexity 1 23 0 566 309 60 18 chrX 112216539 112216756 -50383174 + MIR SINE MIR 32 257 -5 749 201 25 13 chrX 112216830 112216989 -50382941 - MER5A DNA MER1_type 0 189 29 18091 216 29 26 chrX 112217520 112225090 -50374840 - L1PA15 LINE L1 -7 7596 7 222 37 0 0 chrX 112225769 112225796 -50374134 + (TAA)n Simple_repeat Simple_repeat 1 27 0 332 319 58 22 chrX 112226004 112226142 -50373788 - MIR SINE MIR -117 145 3 575 320 53 35 chrX 112227044 112227328 -50372602 + L2 LINE L2 1529 1817 -1497 246 32 0 0 chrX 112227656 112227687 -50372243 + (CA)n Simple_repeat Simple_repeat 2 32 0 400 315 30 24 chrX 112227719 112227762 -50372168 - L1M4 LINE L1 -1432 4714 4673 219 69 0 0 chrX 112227762 112227791 -50372139 + (TTA)n Simple_repeat Simple_repeat 2 30 0 400 315 30 24 chrX 112227791 112228077 -50371853 - L1M4 LINE L1 -1473 4673 4383 3170 148 111 25 chrX 112228109 112228758 -50371172 + MER39 LTR ERV1 1 705 -2 4243 189 53 15 chrX 112228799 112229758 -50370172 - L1MC3 LINE L1 0 7768 6773 3572 258 86 32 chrX 112229772 112231749 -50368181 - L1MC3 LINE L1 -1481 6287 3044 358 239 54 0 chrX 112231964 112232056 -50367874 - MER21B LTR ERV1 -109 754 658 1459 246 132 92 chrX 112232064 112232736 -50367194 - MER21B LTR ERV1 -152 711 13 327 312 0 56 chrX 112232983 112233027 -50366903 + L1ME LINE L1 270 315 -5755 3177 145 15 17 chrX 112233027 112233559 -50366371 - LTR26B LTR ERV1 0 531 1 327 312 0 56 chrX 112233559 112233639 -50366291 + L1ME LINE L1 315 387 -5683 961 178 11 17 chrX 112233698 112233872 -50366058 + AluJo SINE Alu 127 299 -13 941 264 45 32 chrX 112233872 112234099 -50365831 + L1ME LINE L1 2429 2665 -3415 3380 67 2 9 chrX 112234099 112234550 -50365380 + LTR7 LTR ERV1 1 448 -2 941 264 45 32 chrX 112234550 112234724 -50365206 + L1ME LINE L1 2665 2835 -3245 2087 121 24 40 chrX 112234874 112235254 -50364676 + THE1C LTR MaLR 2 375 0 9461 117 44 39 chrX 112235254 112236825 -50363105 + THE1C-int LTR MaLR 1 1579 -1 1809 149 49 32 chrX 112236826 112237195 -50362735 + THE1C LTR MaLR 1 375 0 2176 155 28 24 chrX 112237613 112238311 -50361619 + L1PB2 LINE L1 4876 5567 -584 1392 130 5 14 chrX 112238320 112238535 -50361395 - THE1-int LTR MaLR -180 1400 1188 3816 99 30 17 chrX 112238544 112239137 -50360793 + L1PB2 LINE L1 5548 6148 -3 287 282 102 14 chrX 112239202 112239418 -50360512 - L1MC3 LINE L1 -3780 2349 2115 754 214 6 0 chrX 112239781 112239959 -50359971 + L1 LINE L1 5156 5334 -812 684 293 73 14 chrX 112240149 112240436 -50359494 + L2 LINE L2 3008 3311 -2 282 116 0 0 chrX 112240622 112240665 -50359265 + (TTCCC)n Simple_repeat Simple_repeat 2 44 0 806 315 77 30 chrX 112240677 112241432 -50358498 - L1MC3 LINE L1 -4869 1250 461 2171 111 0 0 chrX 112241729 112242031 -50357899 + AluSc SINE Alu 1 302 0 611 258 32 77 chrX 112242369 112242590 -50357340 - MLT1I LTR MaLR 0 409 199 313 361 19 6 chrX 112242733 112242891 -50357039 + L2 LINE L2 1891 2050 -1264 24 0 0 0 chrX 112242949 112242973 -50356957 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 112243157 112243186 -50356744 + AT_rich Low_complexity Low_complexity 1 29 0 2238 176 35 31 chrX 112243556 112244011 -50355919 - MSTB2 LTR MaLR 0 457 1 268 326 35 12 chrX 112244200 112244286 -50355644 + MIR3 SINE MIR 94 181 -27 2364 89 3 0 chrX 112245801 112246104 -50353826 - AluSg SINE Alu -6 304 1 2217 61 46 0 chrX 112246115 112246395 -50353535 - AluY SINE Alu -16 295 3 372 335 58 31 chrX 112246425 112246616 -50353314 + MIR SINE MIR 2 197 -65 463 170 70 0 chrX 112246619 112246719 -50353211 + L1MA2 LINE L1 25 131 -7434 356 338 60 13 chrX 112246726 112246877 -50353053 - L3 LINE CR1 -11 1566 1409 19907 176 20 11 chrX 112246897 112251582 -50348348 + L1MA2 LINE L1 126 4849 -2716 5988 140 18 20 chrX 112251641 112253494 -50346436 + L1MA2 LINE L1 5876 7723 0 566 318 37 37 chrX 112253507 112253831 -50346099 - L2 LINE L2 -849 2465 2142 1880 144 37 40 chrX 112254418 112254794 -50345136 + THE1C LTR MaLR 1 375 0 1257 233 126 43 chrX 112255270 112255810 -50344120 + MER34C LTR ERV1 1 585 0 812 178 108 54 chrX 112255971 112256212 -50343718 + LTR48 LTR ERV1 1 254 -533 810 221 101 39 chrX 112256180 112256438 -50343492 + LTR48 LTR ERV1 514 787 0 * 21 0 0 0 chrX 112256835 112256856 -50343074 + AT_rich Low_complexity Low_complexity 1 21 0 1155 243 100 44 chrX 112257915 112258405 -50341525 + MLT1E2 LTR MaLR 1 519 -107 441 313 68 12 chrX 112258531 112258694 -50341236 - L2 LINE L2 -575 2739 2568 347 118 0 0 chrX 112258701 112258752 -50341178 + MLT1E2 LTR MaLR 565 615 -39 454 266 133 6 chrX 112258918 112259076 -50340854 - MER5B DNA MER1_type 0 178 1 263 216 34 68 chrX 112259484 112259572 -50340358 - L2 LINE L2 0 3313 3229 229 111 0 0 chrX 112259633 112259678 -50340252 - LTR66 LTR ERVL -172 438 394 260 307 149 42 chrX 112259708 112260017 -50339913 - L2 LINE L2 -131 3182 2841 1462 96 0 0 chrX 112260125 112260313 -50339617 + AluSx SINE Alu 1 188 -124 1302 220 8 4 chrX 112260539 112260789 -50339141 - AluJo SINE Alu -17 295 45 14688 161 33 22 chrX 112260791 112262801 -50337129 + L1MA3 LINE L1 1013 3001 -4723 2039 116 0 36 chrX 112262801 112263103 -50336827 + AluSg SINE Alu 1 291 -19 14688 161 33 22 chrX 112263103 112263336 -50336594 + L1MA3 LINE L1 3001 3230 -4494 3815 44 0 8 chrX 112263336 112263812 -50336118 + L1PA5 LINE L1 5682 6153 -1 14688 161 33 22 chrX 112263812 112268207 -50331723 + L1MA3 LINE L1 3230 7724 0 1469 243 101 34 chrX 112268332 112268798 -50331132 + MLT1D LTR MaLR 1 497 -8 291 271 71 0 chrX 112268805 112268890 -50331040 - L1MB8 LINE L1 -25 6153 6063 5577 172 48 10 chrX 112268906 112270251 -50329679 - L1MC1 LINE L1 -18 6315 4924 935 201 0 0 chrX 112270258 112270427 -50329503 + L1M2 LINE L1 5625 5793 -519 467 26 52 0 chrX 112270439 112270516 -50329414 + (TA)n Simple_repeat Simple_repeat 1 81 0 406 347 25 20 chrX 112270522 112270718 -50329212 - MIR SINE MIR -58 204 8 2004 226 49 6 chrX 112270719 112271227 -50328703 + L1MD2 LINE L1 5828 6357 -2 1089 293 84 30 chrX 112271229 112272093 -50327837 + L1MEc LINE L1 989 1899 -4497 * 5382 254 32 50 chrX 112272089 112274647 -50325283 + L1M4 LINE L1 3 2686 -4452 * 7133 219 50 68 chrX 112274644 112276701 -50323229 + L1M4 LINE L1 3317 5408 -1581 234 0 0 0 chrX 112276701 112276727 -50323203 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 7133 219 50 68 chrX 112276727 112277519 -50322411 + L1M4 LINE L1 5408 6116 -873 1987 132 0 28 chrX 112277519 112277837 -50322093 + AluSc SINE Alu 1 309 0 7133 219 50 68 chrX 112277837 112278108 -50321822 + L1M4 LINE L1 6116 6390 -599 763 71 0 0 chrX 112278114 112278212 -50321718 + L1PA3 LINE L1 1 98 -6048 * 36900 37 26 1 chrX 112278181 112283614 -50316316 + L1PA3 LINE L1 580 6151 -4 21 0 0 0 chrX 112283614 112283635 -50316295 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chrX 112283644 112283670 -50316260 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 882 153 85 0 chrX 112283684 112283873 -50316057 + L1M4 LINE L1 6399 6603 -392 2251 244 117 45 chrX 112283879 112284632 -50315298 + MER21B LTR ERV1 5 811 -52 3067 210 27 19 chrX 112284662 112285338 -50314592 + MER21B-int LTR ERV1 2 682 -3509 1357 252 48 6 chrX 112285355 112285708 -50314222 + MER21B-int LTR ERV1 1269 1636 -2555 5769 161 12 6 chrX 112285777 112287510 -50312420 - L1PB2 LINE L1 -3 6148 4403 655 239 19 7 chrX 112287539 112287694 -50312236 + MER4B-int LTR ERV1 4537 4693 -2065 6556 207 30 24 chrX 112287727 112289106 -50310824 + MER4B-int LTR ERV1 1644 3030 -1161 402 265 0 10 chrX 112289151 112289249 -50310681 + MER21B LTR ERV1 276 372 -491 1679 267 44 11 chrX 112289268 112289818 -50310112 + L1ME2 LINE L1 5603 6332 -2 207 0 0 0 chrX 112289861 112289884 -50310046 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 730 328 94 56 chrX 112290020 112290714 -50309216 - L2 LINE L2 -210 3062 2339 1002 207 3 3 chrX 112290723 112291011 -50308919 - MLT1A1 LTR MaLR -2 363 1 4292 194 83 46 chrX 112291011 112291150 -50308780 - MLT1A1-int LTR MaLR 0 1735 1603 1894 97 7 0 chrX 112291150 112291429 -50308501 + L1MA2 LINE L1 6024 6304 0 4292 194 83 46 chrX 112291429 112292788 -50307142 - MLT1A1-int LTR MaLR -132 1603 4 1763 202 10 22 chrX 112292792 112293194 -50306736 - MLT1A1 LTR MaLR 0 375 7 203 233 33 33 chrX 112293549 112293609 -50306321 - L2 LINE L2 -4 3309 3250 21 0 0 0 chrX 112294137 112294158 -50305772 + AT_rich Low_complexity Low_complexity 1 21 0 2380 76 3 0 chrX 112294205 112294509 -50305421 - AluY SINE Alu -6 305 1 1993 139 0 19 chrX 112295010 112295320 -50304610 + AluSx SINE Alu 1 304 -8 6238 119 34 13 chrX 112295334 112296436 -50303494 - L1MA1 LINE L1 0 7721 6583 459 148 40 40 chrX 112296447 112296548 -50303382 + L1 LINE L1 5108 5208 -938 317 94 62 0 chrX 112296544 112296608 -50303322 - L1MA1 LINE L1 -4351 3214 3147 * 379 207 73 0 chrX 112296600 112296682 -50303248 - L1MA1 LINE L1 -7462 103 16 291 245 32 11 chrX 112297278 112297372 -50302558 - LTR49-int LTR ERV1 -4949 1382 1287 271 282 28 0 chrX 112297445 112297516 -50302414 - tRNA-Glu-GAG tRNA tRNA 0 75 3 512 245 153 15 chrX 112297517 112297713 -50302217 - LTR49-int LTR ERV1 -5122 1209 987 399 248 30 0 chrX 112297794 112297895 -50302035 + LTR49-int LTR ERV1 3264 3367 -2964 647 160 0 0 chrX 112297925 112298031 -50301899 + LTR49-int LTR ERV1 3348 3453 -2878 1957 207 65 64 chrX 112298217 112299772 -50300158 + LTR49-int LTR ERV1 1710 4622 -1709 3726 84 4 2 chrX 112299772 112300296 -50299634 - L1PA8 LINE L1 -877 5269 4745 7197 46 8 0 chrX 112300296 112301194 -50298736 + L1PA8 LINE L1 5267 6172 0 6850 184 58 35 chrX 112301221 112302211 -50297719 + LTR49-int LTR ERV1 4625 5671 -660 2962 178 28 69 chrX 112302211 112302932 -50296998 - LTR8 LTR ERV1 0 691 1 6850 184 58 35 chrX 112302932 112303601 -50296329 + LTR49-int LTR ERV1 5671 6323 -8 1409 171 79 129 chrX 112303604 112304188 -50295742 + LTR49 LTR ERV1 5 620 -33 3863 50 17 2 chrX 112305093 112305576 -50294354 - LTR2B LTR ERV1 0 490 1 1802 158 58 3 chrX 112305798 112306126 -50293804 - MER7A DNA MER2_type -1 345 2 14472 169 12 20 chrX 112306900 112311375 -50288555 - L1MA1 LINE L1 0 7721 3287 41787 58 3 0 chrX 112311432 112317567 -50282363 + L1PA5 LINE L1 1 6153 -1 2887 107 8 65 chrX 112317591 112318117 -50281813 - L1MA1 LINE L1 -4302 3263 2768 3185 190 62 78 chrX 112318140 112318957 -50280973 - L1MA1 LINE L1 -6747 818 15 468 176 27 49 chrX 112319116 112319246 -50280684 - MIR3 SINE MIR -6 202 74 205 339 37 37 chrX 112319356 112319465 -50280465 + L2 LINE L2 1302 1410 -1904 765 334 115 48 chrX 112319641 112320560 -50279370 + L2 LINE L2 1528 2523 -791 2287 141 37 46 chrX 112320560 112320994 -50278936 - MSTB1 LTR MaLR -2 430 1 765 334 115 48 chrX 112320994 112321094 -50278836 + L2 LINE L2 2523 2615 -699 * 1271 312 121 22 chrX 112321093 112321871 -50278059 - L2 LINE L2 -3 3310 2454 1212 196 0 14 chrX 112321983 112322203 -50277727 + MER20 DNA MER1_type 1 217 -2 209 243 0 0 chrX 112322210 112322247 -50277683 + L2 LINE L2 3014 3050 -222 488 273 56 14 chrX 112322338 112322481 -50277449 - MIR SINE MIR -112 150 2 465 308 53 0 chrX 112322563 112322696 -50277234 + L2 LINE L2 3126 3265 -7 2303 117 0 0 chrX 112324790 112325098 -50274832 + AluSx SINE Alu 1 308 -4 252 376 21 14 chrX 112325456 112325597 -50274333 - L2 LINE L2 -213 3059 2918 3952 107 53 14 chrX 112325692 112326311 -50273619 - MER39B LTR ERV1 -10 643 1 22 0 0 0 chrX 112327181 112327203 -50272727 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chrX 112327580 112327605 -50272325 + (TTA)n Simple_repeat Simple_repeat 2 26 0 393 372 76 41 chrX 112327903 112328344 -50271586 - L2 LINE L2 -768 2546 2081 1876 152 171 11 chrX 112328344 112328713 -50271217 - MSTA LTR MaLR 0 428 1 393 372 76 41 chrX 112328713 112328809 -50271121 - L2 LINE L2 -1233 2081 1990 669 90 0 0 chrX 112328939 112329028 -50270902 + AluSc SINE Alu 209 297 -12 1242 207 42 56 chrX 112330321 112330766 -50269164 - MLT1A1 LTR MaLR 0 365 1 450 303 170 6 chrX 112330766 112330931 -50268999 - MIR SINE MIR -60 202 11 264 246 0 0 chrX 112332222 112332279 -50267651 - L2 LINE L2 -2 3311 3255 6833 154 21 7 chrX 112332712 112335027 -50264903 - L1MA1 LINE L1 0 6302 3955 304 353 52 39 chrX 112335336 112335568 -50264362 - L2 LINE L2 -1092 2222 1988 546 68 0 0 chrX 112335572 112335646 -50264284 + L1MA1 LINE L1 6228 6301 -1 1971 333 105 20 chrX 112335950 112337213 -50262717 - L2 LINE L2 -43 3270 1897 207 319 69 28 chrX 112337272 112337344 -50262586 - L2 LINE L2 -2102 1212 1138 4309 122 49 20 chrX 112337358 112338066 -50261864 - L1PA16 LINE L1 -9 6157 5429 653 160 0 8 chrX 112338066 112338191 -50261739 - L1 LINE L1 -1307 4839 4716 372 369 49 49 chrX 112338191 112338744 -50261186 - L2 LINE L2 -2166 1148 596 1379 266 66 33 chrX 112338944 112339520 -50260410 - HAL1 LINE L1 -752 1755 1161 904 237 53 16 chrX 112339532 112339777 -50260153 + MIR SINE MIR 8 261 -1 555 282 138 82 chrX 112339804 112339901 -50260029 - HAL1 LINE L1 -1355 1152 1062 1289 141 39 0 chrX 112339901 112340135 -50259795 + L1MA9 LINE L1 6070 6312 0 555 282 138 82 chrX 112340135 112341040 -50258890 - HAL1 LINE L1 -1445 1062 94 636 284 84 72 chrX 112341047 112341297 -50258633 + MIR SINE MIR 10 262 0 786 299 71 46 chrX 112341559 112341936 -50257994 - MLT1L LTR MaLR -180 435 46 2281 112 0 0 chrX 112341936 112342239 -50257691 + AluSx SINE Alu 1 303 -9 786 299 71 46 chrX 112342239 112342272 -50257658 - MLT1L LTR MaLR -569 46 15 2456 74 7 3 chrX 112343450 112343760 -50256170 - AluSp SINE Alu -2 311 1 333 277 142 38 chrX 112343906 112343977 -50255953 + L3 LINE CR1 984 1046 -531 1938 204 5 14 chrX 112343977 112344345 -50255585 + MLT1A1 LTR MaLR 1 365 0 333 277 142 38 chrX 112344345 112344573 -50255357 + L3 LINE CR1 1046 1384 -193 350 286 58 32 chrX 112344768 112344957 -50254973 - L1ME3A LINE L1 -225 5945 5752 237 300 38 0 chrX 112345017 112345097 -50254833 - L1ME3A LINE L1 -2076 5732 5650 476 249 0 93 chrX 112345196 112345401 -50254529 - MER58C DNA MER1_type -10 205 20 255 323 31 23 chrX 112345413 112345543 -50254387 - L1ME3A LINE L1 -646 5516 5386 304 295 47 31 chrX 112345677 112345806 -50254124 + L1M4 LINE L1 5148 5278 -868 313 306 35 21 chrX 112345819 112345963 -50253967 + L3 LINE CR1 1426 1571 -6 455 263 63 40 chrX 112345995 112346170 -50253760 - MIR3 SINE MIR -9 199 21 198 0 0 0 chrX 112347092 112347114 -50252816 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2340 110 0 3 chrX 112348453 112348763 -50251167 - AluSp SINE Alu -4 309 1 255 336 8 42 chrX 112352218 112352337 -50247593 + L2 LINE L2 3158 3272 0 602 196 0 0 chrX 112352524 112352631 -50247299 + AluJb SINE Alu 134 240 -72 506 224 39 39 chrX 112352633 112352812 -50247118 + L1MC4a LINE L1 7628 7806 -2 1063 195 9 0 chrX 112352978 112353199 -50246731 - L1MA6 LINE L1 -25 6275 6053 3473 118 58 41 chrX 112353203 112353807 -50246123 + MER39B LTR ERV1 3 616 -37 2322 92 3 0 chrX 112353818 112354113 -50245817 - AluSp SINE Alu -17 296 1 2808 134 21 16 chrX 112354113 112354599 -50245331 - L1MA6 LINE L1 -471 5829 5342 3672 157 19 10 chrX 112355363 112356057 -50243873 - L1MA6 LINE L1 -796 5350 4651 338 296 12 53 chrX 112356701 112356870 -50243060 - L1ME LINE L1 -446 5675 5514 21 57 0 0 chrX 112356888 112356923 -50243007 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chrX 112356980 112357001 -50242929 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chrX 112357107 112357146 -50242784 + AT_rich Low_complexity Low_complexity 1 39 0 1058 183 65 22 chrX 112357416 112357757 -50242173 - L1MA4A LINE L1 -28 6277 5876 26 50 0 0 chrX 112358026 112358066 -50241864 + AT_rich Low_complexity Low_complexity 1 40 0 2163 134 0 3 chrX 112358135 112358448 -50241482 + AluSx SINE Alu 1 312 0 2449 221 62 26 chrX 112358816 112359481 -50240449 - L1ME1 LINE L1 -5 6161 5473 2204 106 0 0 chrX 112359531 112359849 -50240081 - AluSx SINE Alu 0 318 1 2131 179 76 12 chrX 112359858 112360333 -50239597 - L1MB8 LINE L1 0 6178 5668 1719 114 0 0 chrX 112360333 112360570 -50239360 - AluSg/x SINE Alu -7 305 69 2131 179 76 12 chrX 112360570 112360592 -50239338 - L1MB8 LINE L1 -510 5668 5649 2319 179 49 2 chrX 112360617 112361063 -50238867 - L1MC1 LINE L1 -31 6302 5836 581 250 26 56 chrX 112361066 112361252 -50238678 - L1ME LINE L1 -4576 1685 1506 2256 94 3 3 chrX 112361252 112361551 -50238379 - AluSg SINE Alu -11 299 1 581 250 26 56 chrX 112361551 112361596 -50238334 - L1ME LINE L1 -4755 1506 1461 1285 217 60 11 chrX 112361630 112361987 -50237943 - LTR43 LTR ERV1 -57 478 176 2532 77 0 3 chrX 112362309 112362622 -50237308 - AluSp SINE Alu -1 312 1 995 294 98 49 chrX 112362639 112363903 -50236027 - L1ME LINE L1 -4881 1201 2 1891 162 0 13 chrX 112363973 112364288 -50235642 - AluJo SINE Alu -1 311 1 32 26 0 0 chrX 112364323 112364362 -50235568 + AT_rich Low_complexity Low_complexity 1 39 0 1020 309 62 21 chrX 112364605 112365091 -50234839 - MLT1J LTR MaLR -4 507 2 51 65 0 0 chrX 112365454 112365547 -50234383 + AT_rich Low_complexity Low_complexity 1 93 0 1911 122 0 8 chrX 112366236 112366498 -50233432 + AluSx SINE Alu 1 260 -52 376 326 144 30 chrX 112367471 112367971 -50231959 + HAL1 LINE L1 1137 1693 -814 2270 113 0 0 chrX 112367991 112368300 -50231630 + AluSc SINE Alu 1 309 0 201 218 0 58 chrX 112368337 112368424 -50231506 + A-rich Low_complexity Low_complexity 5 86 0 28 71 0 0 chrX 112368667 112368723 -50231207 + AT_rich Low_complexity Low_complexity 1 56 0 343 300 92 57 chrX 112368864 112369354 -50230576 + L1 LINE L1 2207 2713 -3433 728 338 73 11 chrX 112369402 112369879 -50230051 + L1 LINE L1 2786 3292 -2854 254 233 107 10 chrX 112370184 112370287 -50229643 + L1 LINE L1 3635 3747 -2399 2126 111 0 10 chrX 112370307 112370595 -50229335 + AluSx SINE Alu 1 285 -27 257 25 75 0 chrX 112370602 112370642 -50229288 + A-rich Low_complexity Low_complexity 3 45 0 448 243 45 68 chrX 112370725 112370763 -50229167 + L1ME3A LINE L1 3869 3906 -2240 4087 107 41 17 chrX 112370763 112371401 -50228529 - MER39B LTR ERV1 0 653 1 448 243 45 68 chrX 112371401 112371539 -50228391 + L1ME3A LINE L1 3906 4041 -2105 4861 165 19 27 chrX 112371579 112372481 -50227449 - MER4D LTR ERV1 -8 895 1 415 291 86 36 chrX 112372654 112373153 -50226777 + L1ME3A LINE L1 4323 4846 -1300 1687 143 22 6 chrX 112373165 112373661 -50226269 + LTR49 LTR ERV1 1 594 -1 219 77 39 39 chrX 112373763 112373815 -50226115 + (TA)n Simple_repeat Simple_repeat 1 52 0 739 289 63 51 chrX 112374075 112374705 -50225225 + L1ME3A LINE L1 5255 5892 -278 22 35 0 0 chrX 112374789 112374818 -50225112 + AT_rich Low_complexity Low_complexity 1 29 0 261 337 0 0 chrX 112374854 112374955 -50224975 - MIR SINE MIR -56 206 106 361 341 0 7 chrX 112375217 112375352 -50224578 + L2 LINE L2 2499 2632 -682 258 320 32 0 chrX 112375939 112376064 -50223866 - L1MC4a LINE L1 -1898 5910 5782 306 307 223 23 chrX 112376303 112376518 -50223412 + L3 LINE CR1 1031 1288 -289 435 332 105 18 chrX 112376768 112376997 -50222933 - L3 LINE CR1 -6 1571 1323 21 0 0 0 chrX 112377926 112377947 -50221983 + AT_rich Low_complexity Low_complexity 1 21 0 1848 225 106 20 chrX 112378089 112378676 -50221254 - L1MD2 LINE L1 -15 6344 5708 735 182 115 5 chrX 112378696 112378888 -50221042 - L1MDb LINE L1 -4664 1876 1664 347 182 0 0 chrX 112378917 112378983 -50220947 - LTR17 LTR ERV1 -26 754 689 253 182 0 0 chrX 112378983 112379027 -50220903 - LTR17 LTR ERV1 -26 754 711 5411 98 3 9 chrX 112379027 112379786 -50220144 - LTR17 LTR ERV1 -26 754 1 2306 230 46 16 chrX 112379787 112380600 -50219330 - L1MDb LINE L1 -4853 1687 860 936 262 32 39 chrX 112381223 112381532 -50218398 - L1MDb LINE L1 -6200 340 34 2320 102 3 0 chrX 112381560 112381865 -50218065 + AluSp SINE Alu 1 306 -7 336 21 0 21 chrX 112382625 112382672 -50217258 - MADE1 DNA Mariner -34 46 1 196 344 0 0 chrX 112382758 112382819 -50217111 + L2 LINE L2 3200 3260 -12 2389 152 17 27 chrX 112383934 112384343 -50215587 + MLT2D LTR ERVL 7 411 -3 2000 97 18 73 chrX 112384515 112384844 -50215086 - AluSx SINE Alu -1 311 1 383 342 33 13 chrX 112384863 112385015 -50214915 - MIR SINE MIR -85 177 23 500 223 0 0 chrX 112385263 112385357 -50214573 - MER81 DNA DNA -20 94 1 2278 101 7 0 chrX 112385692 112385990 -50213940 + AluSx SINE Alu 1 300 -12 4088 123 23 86 chrX 112386534 112387372 -50212558 - LTR1 LTR ERV1 0 785 1 2285 73 13 29 chrX 112387722 112388036 -50211894 - AluY SINE Alu -2 309 1 2011 135 72 26 chrX 112389314 112389662 -50210268 - THE1B LTR MaLR 0 364 1 384 353 26 13 chrX 112389828 112390010 -50209920 - MIR SINE MIR -69 139 6 300 367 171 48 chrX 112390294 112390651 -50209279 - L2 LINE L2 -47 3225 2825 624 324 91 4 chrX 112390829 112391070 -50208860 - MIR SINE MIR 0 262 1 878 114 0 66 chrX 112391624 112391762 -50208168 + L1MA7 LINE L1 6110 6237 -54 2167 119 0 0 chrX 112391762 112392055 -50207875 + AluSg SINE Alu 1 293 -17 878 114 0 66 chrX 112392055 112392083 -50207847 + L1MA7 LINE L1 6237 6265 -26 2201 103 3 0 chrX 112392101 112392424 -50207506 + AluSp SINE Alu 1 324 0 1973 132 14 3 chrX 112392475 112392771 -50207159 + AluSg SINE Alu 1 299 -11 21 71 0 0 chrX 112392891 112392933 -50206997 + AT_rich Low_complexity Low_complexity 1 42 0 294 29 0 0 chrX 112394342 112394377 -50205553 + (CCA)n Simple_repeat Simple_repeat 3 37 0 1566 125 8 108 chrX 112395051 112395244 -50204686 - MER4A LTR ERV1 0 664 468 2231 91 6 41 chrX 112395244 112395564 -50204366 + AluSq SINE Alu 1 309 -4 1566 125 8 108 chrX 112395564 112395754 -50204176 - MER4A LTR ERV1 -196 468 261 323 83 375 14 chrX 112395754 112395826 -50204104 - MER4A LTR ERV1 -566 98 1 363 319 72 26 chrX 112395972 112396836 -50203094 + L1 LINE L1 3695 4610 -1536 2042 122 10 0 chrX 112396839 112397127 -50202803 - AluSg SINE Alu -19 291 1 228 313 259 5 chrX 112397319 112397542 -50202388 + L2 LINE L2 2761 3035 -237 250 311 25 25 chrX 112397547 112397669 -50202261 - L2 LINE L2 -1051 2263 2142 * 456 226 19 19 chrX 112397659 112397765 -50202165 + L2 LINE L2 3193 3298 -15 449 368 119 14 chrX 112397774 112398201 -50201729 - L2 LINE L2 -1157 2157 1686 26 30 0 0 chrX 112398375 112398408 -50201522 + AT_rich Low_complexity Low_complexity 1 33 0 284 245 210 5 chrX 112398409 112398514 -50201416 + MIR SINE MIR 32 144 -64 7547 18 0 0 chrX 112398538 112399407 -50200523 + L1PA2 LINE L1 5283 6151 -4 2360 142 3 16 chrX 112400186 112400573 -50199357 - L1MC1 LINE L1 -30 6303 5922 13693 134 49 27 chrX 112400574 112401426 -50198504 - Tigger1 DNA MER2_type -1 2417 1585 6410 73 28 0 chrX 112401426 112403192 -50196738 - L1PA10 LINE L1 -10 6158 4355 13693 134 49 27 chrX 112403192 112404704 -50195226 - Tigger1 DNA MER2_type -833 1585 1 3044 126 66 4 chrX 112404704 112405203 -50194727 - L1MC1 LINE L1 -410 5923 5394 888 170 13 85 chrX 112405211 112405435 -50194495 - L1MB2 LINE L1 -45 6126 5919 290 278 9 17 chrX 112405456 112405571 -50194359 + (TATATG)n Simple_repeat Simple_repeat 2 115 0 5535 158 19 17 chrX 112405589 112407242 -50192688 - L1MA9 LINE L1 -1 6311 4656 1940 112 3 59 chrX 112407846 112408151 -50191779 + AluSg SINE Alu 1 288 -22 5928 91 4 6 chrX 112408714 112409540 -50190390 - L1PB1 LINE L1 -60 6091 5268 303 139 0 101 chrX 112409764 112409843 -50190087 + LTR66 LTR ERVL 398 468 -142 233 216 14 27 chrX 112409854 112409928 -50190002 + (TA)n Simple_repeat Simple_repeat 1 73 0 572 318 58 16 chrX 112410198 112410440 -50189490 - MIR SINE MIR -9 253 2 501 244 30 30 chrX 112410521 112410685 -50189245 + L1MEc LINE L1 39 202 -6194 459 222 22 0 chrX 112411081 112411171 -50188759 + MER2 DNA MER2_type 1 92 -253 260 263 0 18 chrX 112411175 112411232 -50188698 - MER2 DNA MER2_type 0 345 290 273 213 0 0 chrX 112411239 112411286 -50188644 + MER2 DNA MER2_type 297 343 -2 424 270 66 5 chrX 112411346 112411557 -50188373 + L1MEc LINE L1 827 1050 -5155 1353 238 45 7 chrX 112411576 112412098 -50187832 + L1MCb LINE L1 813 1370 -4851 1064 164 5 0 chrX 112412096 112412297 -50187633 - L1 LINE L1 -782 5364 5163 * 3097 243 77 26 chrX 112412609 112413674 -50186256 - L1M4c LINE L1 -4728 1918 800 317 309 66 74 chrX 112413991 112414039 -50185891 - L1M4c LINE L1 -6300 242 195 1461 195 10 17 chrX 112414039 112414336 -50185594 + AluJo SINE Alu 1 295 -17 317 309 66 74 chrX 112414336 112414530 -50185400 - L1M4c LINE L1 -6347 195 2 198 167 0 0 chrX 112414746 112414782 -50185148 + (TG)n Simple_repeat Simple_repeat 1 36 0 2133 176 27 5 chrX 112414938 112415313 -50184617 - MSTB LTR MaLR 0 426 44 328 318 123 0 chrX 112415360 112415555 -50184375 + L1 LINE L1 4391 4609 -1537 3861 112 80 68 chrX 112418186 112418945 -50180985 - LTR1 LTR ERV1 0 785 18 605 331 62 37 chrX 112419815 112420987 -50178943 - L1ME3A LINE L1 -263 5903 4690 873 185 6 28 chrX 112420987 112421165 -50178765 - FAM SINE Alu 0 175 2 605 331 62 37 chrX 112421165 112421375 -50178555 - L1ME3A LINE L1 -1476 4690 4487 22 0 0 0 chrX 112421490 112421512 -50178418 + AT_rich Low_complexity Low_complexity 1 22 0 654 68 10 29 chrX 112421512 112421615 -50178315 - L1MA1 LINE L1 0 6302 6202 1929 140 3 3 chrX 112421826 112422126 -50177804 - AluJb SINE Alu -12 300 1 3598 241 29 28 chrX 112422144 112423216 -50176714 - L1MC4a LINE L1 -1 7807 6735 1318 226 24 83 chrX 112423221 112423844 -50176086 - L1MC4a LINE L1 -1355 6453 5868 2031 220 19 42 chrX 112424045 112424239 -50175691 - L1MD3 LINE L1 -6 7989 7792 2047 130 7 0 chrX 112424239 112424539 -50175391 - AluSg SINE Alu -8 302 1 2031 220 19 42 chrX 112424539 112424872 -50175058 - L1MD3 LINE L1 -203 7792 7474 1298 242 16 20 chrX 112424916 112425222 -50174708 - L1MD3 LINE L1 -1037 6958 6654 2055 107 40 0 chrX 112425501 112425799 -50174131 - AluSg SINE Alu 0 310 1 378 261 43 22 chrX 112425886 112426024 -50173906 - HAL1b LINE L1 -724 624 484 715 209 25 0 chrX 112426044 112426207 -50173723 - L1MC3 LINE L1 -7 7778 7612 1398 166 0 0 chrX 112426207 112426424 -50173506 - AluSx SINE Alu -95 217 1 9673 199 27 14 chrX 112426652 112427380 -50172550 - L1MC3 LINE L1 -177 7608 6891 240 59 0 0 chrX 112427380 112427414 -50172516 + (TG)n Simple_repeat Simple_repeat 1 34 0 9673 199 27 14 chrX 112427414 112428746 -50171184 - L1MC3 LINE L1 -894 6891 5520 2621 144 92 56 chrX 112429330 112429905 -50170025 + LTR4 LTR ERV1 1 596 0 366 343 105 6 chrX 112430336 112430517 -50169413 + MIR SINE MIR 12 210 -52 21 89 0 0 chrX 112430732 112430788 -50169142 + AT_rich Low_complexity Low_complexity 1 56 0 1890 95 51 31 chrX 112431351 112431645 -50168285 - AluSx SINE Alu -12 300 1 227 130 74 56 chrX 112431749 112431803 -50168127 + MLT2B1 LTR ERVL 466 520 0 10580 214 38 15 chrX 112431806 112432271 -50167659 + L1MB1 LINE L1 2396 2849 -3319 2295 100 0 3 chrX 112432271 112432571 -50167359 - AluSx SINE Alu -13 299 1 10580 214 38 15 chrX 112432571 112435783 -50164147 + L1MB1 LINE L1 2849 6168 0 364 243 0 0 chrX 112436270 112436340 -50163590 + MER70B LTR ERVL 490 559 -19 317 125 31 0 chrX 112436945 112437009 -50162921 - L1MA9 LINE L1 -3 6309 6244 214 269 176 60 chrX 112437151 112437333 -50162597 + L2 LINE L2 3107 3309 -4 424 345 94 46 chrX 112437665 112438186 -50161744 - L2 LINE L2 -994 2320 1775 311 225 56 0 chrX 112438201 112438272 -50161658 - L2 LINE L2 -3 3269 3195 27 0 0 0 chrX 112438496 112438523 -50161407 + AT_rich Low_complexity Low_complexity 1 27 0 765 264 90 31 chrX 112440496 112440795 -50159135 + LTR16A1 LTR ERVL 151 457 0 1013 181 190 59 chrX 112440984 112441305 -50158625 - MLT1A1 LTR MaLR -2 363 1 1736 174 3 10 chrX 112441513 112441811 -50158119 + AluJo SINE Alu 5 300 -12 5077 254 15 20 chrX 112442494 112443266 -50156664 - L1MCa LINE L1 -2255 4309 3535 191 61 30 0 chrX 112443266 112443299 -50156631 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3678 34 0 0 chrX 112443299 112443737 -50156193 - L1PA5 LINE L1 -16 6138 5701 5077 254 15 20 chrX 112443737 112444883 -50155047 - L1MCa LINE L1 -3027 3537 2192 845 232 13 0 chrX 112444887 112445111 -50154819 - L1MCa LINE L1 -4418 2146 1920 2590 176 6 30 chrX 112445120 112445245 -50154685 - L1MC1 LINE L1 -6 6327 6201 2351 93 0 0 chrX 112445245 112445546 -50154384 + AluSg SINE Alu 1 301 -9 2590 176 6 30 chrX 112445546 112445927 -50154003 - L1MC1 LINE L1 -132 6201 5833 250 253 36 36 chrX 112445936 112446019 -50153911 - L1MCa LINE L1 -4560 2004 1922 2326 132 25 0 chrX 112446034 112446398 -50153532 - L1MC1 LINE L1 -519 5814 5442 3494 211 86 154 chrX 112446399 112446450 -50153480 - L1MCb LINE L1 -4765 1799 1746 2171 118 3 6 chrX 112446450 112446764 -50153166 + AluSq SINE Alu 1 313 0 3494 211 86 154 chrX 112446764 112448468 -50151462 - L1MCb LINE L1 -4818 1746 1 798 269 90 53 chrX 112448618 112449109 -50150821 - MLT1J LTR MaLR 0 511 3 1001 120 90 6 chrX 112449256 112449319 -50150611 - LTR9B LTR ERV1 0 644 588 1686 79 0 0 chrX 112449319 112449552 -50150378 + AluY SINE Alu 78 311 0 1001 120 90 6 chrX 112449552 112449655 -50150275 - LTR9B LTR ERV1 -56 588 464 2304 89 26 0 chrX 112451477 112451780 -50148150 - AluSq SINE Alu -2 311 1 1360 190 15 100 chrX 112451854 112452204 -50147726 + MLT1A2 LTR MaLR 1 401 -56 319 339 146 21 chrX 112453797 112453989 -50145941 + L3 LINE CR1 1331 1546 -31 437 253 130 67 chrX 112453995 112454264 -50145666 - MLT1I LTR MaLR -10 399 114 1566 217 84 31 chrX 112454264 112454715 -50145215 + L1MA9 LINE L1 5800 6274 -38 507 218 0 27 chrX 112455063 112455075 -50144855 - FLAM_A SINE Alu -178 133 122 4516 136 44 17 chrX 112455075 112455894 -50144036 - L1MA3 LINE L1 -5 7719 6879 507 218 0 27 chrX 112455894 112455991 -50143939 - FLAM_A SINE Alu -189 122 27 9610 170 14 4 chrX 112456004 112457924 -50142006 - L1MA3 LINE L1 -743 6822 4953 3745 252 56 9 chrX 112457949 112458930 -50141000 - L1MA3 LINE L1 -6524 1041 15 522 332 36 20 chrX 112459072 112459325 -50140605 + L2 LINE L2 2524 2780 -534 413 301 104 43 chrX 112459760 112460415 -50139515 - L1MEc LINE L1 -4912 1484 790 286 293 0 50 chrX 112461425 112461524 -50138406 - L2 LINE L2 0 3313 3220 263 314 29 9 chrX 112461570 112461675 -50138255 - L2 LINE L2 -185 3087 2981 297 258 32 0 chrX 112461743 112461836 -50138094 + L1MC1 LINE L1 4901 4996 -1150 2208 80 34 40 chrX 112461862 112462214 -50137716 + L1MA3 LINE L1 5955 6304 -1 2210 182 34 25 chrX 112462223 112462906 -50137024 + L1MC1 LINE L1 4982 5677 -656 337 169 0 0 chrX 112462904 112462963 -50136967 - L1MC/D LINE L1 -672 5661 5603 * 1242 171 8 32 chrX 112462963 112463206 -50136724 + L1MC1 LINE L1 6088 6327 -6 391 350 144 7 chrX 112463315 112463592 -50136338 - L2 LINE L2 -445 2869 2555 27 62 0 0 chrX 112464209 112464257 -50135673 + AT_rich Low_complexity Low_complexity 1 48 0 1594 226 77 14 chrX 112465298 112465737 -50134193 + MLT1C LTR MaLR 1 467 0 23 0 0 0 chrX 112466375 112466398 -50133532 + AT_rich Low_complexity Low_complexity 1 23 0 955 136 6 11 chrX 112466689 112466865 -50133065 + (CAGA)n Simple_repeat Simple_repeat 2 176 0 243 343 63 29 chrX 112466875 112467050 -50132880 + L1M4 LINE L1 73 253 -6289 2065 240 33 17 chrX 112467150 112467729 -50132201 + L1MB3 LINE L1 4292 4879 -1267 1990 200 22 5 chrX 112467803 112468350 -50131580 + L1MB3 LINE L1 4883 5441 -739 500 107 0 0 chrX 112468351 112468426 -50131504 + AluS SINE Alu 1 75 -238 3072 173 43 5 chrX 112468426 112469011 -50130919 + L1MB3 LINE L1 5577 6183 0 489 291 51 0 chrX 112469018 112469193 -50130737 + L1ME1 LINE L1 5978 6161 -5 231 300 82 9 chrX 112469233 112469343 -50130587 + L3 LINE CR1 1273 1390 -187 5761 121 69 4 chrX 112469346 112470315 -50129615 - Tigger3b DNA MER2_type -42 1189 158 540 328 65 13 chrX 112470325 112470557 -50129373 - MIR SINE MIR -17 245 2 1077 216 39 19 chrX 112470730 112470989 -50128941 - L1MB7 LINE L1 -19 6663 6400 588 221 3 14 chrX 112470981 112471143 -50128787 - L1ME LINE L1 -5110 960 802 * 22 0 0 0 chrX 112471144 112471166 -50128764 + AT_rich Low_complexity Low_complexity 1 22 0 2241 101 3 0 chrX 112471169 112471465 -50128465 + AluSp SINE Alu 3 299 -14 4105 204 62 13 chrX 112471465 112473118 -50126812 - L1MB7 LINE L1 -259 6417 4692 5479 125 21 0 chrX 112473132 112474391 -50125539 - L1PA16 LINE L1 -12 6154 4873 5321 249 83 19 chrX 112474396 112478175 -50121755 - L1MB7 LINE L1 -2578 4066 8 649 225 73 39 chrX 112478175 112478213 -50121717 + MER58A DNA MER1_type 40 75 -2345 2837 124 42 89 chrX 112478213 112478667 -50121263 - MER4A LTR ERV1 -1 599 182 2476 47 17 0 chrX 112478667 112478965 -50120965 - AluY SINE Alu -8 303 1 2837 124 42 89 chrX 112478965 112479137 -50120793 - MER4A LTR ERV1 -418 182 3 649 225 73 39 chrX 112479137 112479276 -50120654 + MER58A DNA MER1_type 75 223 -1 436 314 20 7 chrX 112479318 112479471 -50120459 - MER5A DNA MER1_type 0 189 35 2145 172 8 20 chrX 112480579 112480974 -50118956 - MLT1B LTR MaLR 0 390 1 486 261 46 32 chrX 112481187 112481405 -50118525 - L1MCa LINE L1 -3138 3803 3583 451 356 40 40 chrX 112481445 112481920 -50118010 - L1MCa LINE L1 -3424 3517 3043 237 386 70 13 chrX 112482313 112482471 -50117459 - L2 LINE L2 -616 2698 2532 194 372 35 18 chrX 112482590 112482703 -50117227 - L2 LINE L2 -965 2349 2235 407 280 200 7 chrX 112482883 112483033 -50116897 + MER5A DNA MER1_type 10 188 -1 1175 246 69 32 chrX 112483695 112484205 -50115725 - MER34B LTR ERV1 -4 538 1 22 0 0 0 chrX 112484714 112484736 -50115194 + AT_rich Low_complexity Low_complexity 1 22 0 3856 254 63 34 chrX 112485024 112487890 -50112040 + L1MC3 LINE L1 1 3085 -3479 1681 221 52 76 chrX 112487893 112488431 -50111499 + L1MC3 LINE L1 6007 6531 -1672 248 33 0 0 chrX 112488442 112488472 -50111458 + L1P3 LINE L1 5670 5699 -473 * 2254 201 44 14 chrX 112488471 112488968 -50110962 + L1MC3 LINE L1 7691 8202 -1 1481 280 80 18 chrX 112489004 112489493 -50110437 + MER69 DNA AcHobo 33 551 -1975 1553 274 90 45 chrX 112489503 112489779 -50110151 - L1MCa LINE L1 -4088 3034 2772 2229 164 52 2 chrX 112489779 112490181 -50109749 - MSTB LTR MaLR -4 422 1 1553 274 90 45 chrX 112490181 112491319 -50108611 - L1MCa LINE L1 -4350 2772 1378 346 278 89 6 chrX 112491332 112491501 -50108429 - L1MCa LINE L1 -5079 1344 1162 * 714 262 21 11 chrX 112491492 112491683 -50108247 + L1ME1 LINE L1 5968 6160 -6 13793 127 20 0 chrX 112491765 112494867 -50105063 + L1PA12 LINE L1 3037 6168 0 477 248 31 31 chrX 112496297 112496426 -50103504 - L2 LINE L2 0 3313 3185 707 317 79 4 chrX 112496436 112496701 -50103229 + MLT1J2 LTR MaLR 9 293 -157 533 287 171 18 chrX 112496841 112497183 -50102747 - L2 LINE L2 -124 3189 2748 322 178 12 0 chrX 112497237 112497304 -50102626 - L1ME3 LINE L1 -10 6160 6089 576 104 9 85 chrX 112497308 112497387 -50102543 - Tigger7 DNA MER2_type -1 2486 2415 1705 179 12 38 chrX 112497387 112497733 -50102197 + MER1B DNA MER1_type 1 337 0 576 104 9 85 chrX 112497733 112497759 -50102171 - Tigger7 DNA MER2_type -72 2415 2389 * 1398 172 72 8 chrX 112497757 112498007 -50101923 - Tigger7 DNA MER2_type -284 266 1 380 219 0 137 chrX 112498010 112498156 -50101774 - L1ME3 LINE L1 -87 6075 5950 1137 295 79 19 chrX 112499726 112500620 -50099310 - L1ME3 LINE L1 -242 5928 4978 1087 273 98 45 chrX 112500697 112501050 -50098880 - L1ME3 LINE L1 -2882 3264 2931 2465 109 27 3 chrX 112501050 112501416 -50098514 + THE1C LTR MaLR 1 375 0 1087 273 98 45 chrX 112501416 112501966 -50097964 - L1ME3 LINE L1 -3215 2931 2313 1283 162 36 4 chrX 112502413 112502666 -50097264 - L1 LINE L1 -914 5232 4972 250 277 53 0 chrX 112502668 112502762 -50097168 - L1MD3 LINE L1 -62 7933 7835 * 3365 223 48 74 chrX 112502757 112503463 -50096467 - L1MC4a LINE L1 -1318 6490 5828 1774 85 0 0 chrX 112503463 112503709 -50096221 - L1MA2 LINE L1 -3 6301 6056 3365 223 48 74 chrX 112503709 112504198 -50095732 - L1MC4a LINE L1 -1980 5828 5327 410 304 68 36 chrX 112504244 112504451 -50095479 - L1MC4a LINE L1 -984 5162 4963 1831 172 3 0 chrX 112504451 112504753 -50095177 - AluSx SINE Alu -9 303 1 410 304 68 36 chrX 112504753 112505049 -50094881 - L1MC4a LINE L1 -1183 4963 4643 350 346 58 9 chrX 112505081 112505514 -50094416 - L1MC4a LINE L1 -1612 4534 4081 266 326 12 47 chrX 112505535 112505621 -50094309 - MIR SINE MIR -174 88 6 951 287 97 82 chrX 112506256 112506866 -50093064 - L2 LINE L2 -771 2543 1925 322 284 11 11 chrX 112506930 112507025 -50092905 - L2 LINE L2 -1842 1472 1378 939 249 99 4 chrX 112507105 112507358 -50092572 - LTR16C LTR ERVL -15 476 200 23 33 0 0 chrX 112507440 112507470 -50092460 + AT_rich Low_complexity Low_complexity 1 30 0 1470 120 0 4 chrX 112508611 112508845 -50091085 - L1PB1 LINE L1 0 6151 5919 3044 234 73 22 chrX 112509432 112510343 -50089587 - L1ME1 LINE L1 -19 6407 5544 295 29 0 0 chrX 112510343 112510378 -50089552 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 1537 194 0 24 chrX 112510378 112510667 -50089263 - AluJo SINE Alu -1 316 1 3044 234 73 22 chrX 112510667 112510829 -50089101 - L1ME1 LINE L1 -882 5544 5392 2439 208 24 11 chrX 112510829 112511364 -50088566 - MER34 LTR ERV1 0 542 1 3044 234 73 22 chrX 112511364 112511619 -50088311 - L1ME1 LINE L1 -1034 5392 5015 2256 247 117 45 chrX 112511678 112511795 -50088135 - L1ME1 LINE L1 -4174 2232 2125 1704 186 42 0 chrX 112511795 112512129 -50087801 - L1PA16 LINE L1 -3 6163 5816 2256 247 117 45 chrX 112512129 112513285 -50086645 - L1ME1 LINE L1 -4281 2125 868 254 290 0 11 chrX 112513335 112513428 -50086502 - L1ME1 LINE L1 -5524 885 794 1880 154 55 25 chrX 112513545 112513909 -50086021 + THE1C LTR MaLR 1 375 0 29 0 0 0 chrX 112514695 112514724 -50085206 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrX 112515600 112515624 -50084306 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chrX 112515942 112515965 -50083965 + AT_rich Low_complexity Low_complexity 1 23 0 316 320 60 27 chrX 112516725 112516875 -50083055 - MIR3 SINE MIR -48 160 6 1987 143 39 41 chrX 112517198 112517562 -50082368 - THE1B LTR MaLR -1 363 1 240 299 117 35 chrX 112518077 112518274 -50081656 - L2 LINE L2 -102 3211 2999 231 337 48 0 chrX 112518340 112518423 -50081507 + L2 LINE L2 3168 3254 -18 187 353 72 14 chrX 112518497 112518636 -50081294 - L2 LINE L2 -460 2854 2708 255 345 44 57 chrX 112518737 112518966 -50080964 - L2 LINE L2 -631 2683 2458 22849 39 45 2 chrX 112518974 112521888 -50078042 + L1P LINE L1 566 3602 -2544 24 53 0 0 chrX 112522128 112522166 -50077764 + AT_rich Low_complexity Low_complexity 1 38 0 2477 163 77 13 chrX 112522166 112523797 -50076133 - L1 LINE L1 -3327 4238 2449 * 31032 106 17 59 chrX 112523795 112530209 -50069721 - L1PA7 LINE L1 -11 6143 12 12960 178 44 12 chrX 112530220 112532585 -50067345 - L1 LINE L1 -5102 2463 24 270 286 40 51 chrX 112533042 112533217 -50066713 - HAL1b LINE L1 -889 459 287 407 92 15 0 chrX 112533436 112533501 -50066429 + (TA)n Simple_repeat Simple_repeat 1 66 0 260 336 0 29 chrX 112533539 112533679 -50066251 - L1ME1 LINE L1 -72 6592 6457 36 77 0 0 chrX 112533732 112533810 -50066120 + AT_rich Low_complexity Low_complexity 1 78 0 249 117 36 45 chrX 112533814 112533925 -50066005 + (TA)n Simple_repeat Simple_repeat 2 111 0 1376 253 84 34 chrX 112533975 112534649 -50065281 - L1ME1 LINE L1 -313 6349 5643 2127 113 0 7 chrX 112534665 112534958 -50064972 + AluSq SINE Alu 1 291 -22 200 35 35 0 chrX 112534962 112534991 -50064939 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 659 228 7 14 chrX 112535017 112535162 -50064768 - MER74C LTR ERVL -312 148 5 1170 293 54 54 chrX 112535178 112536038 -50063892 - L1ME1 LINE L1 -4345 2480 1475 468 178 9 47 chrX 112536055 112536162 -50063768 - L1MC1 LINE L1 -14 6319 6217 1342 273 37 41 chrX 112536215 112536651 -50063279 - MER74B LTR ERVL -74 548 115 2025 50 0 35 chrX 112536656 112536916 -50063014 - AluY SINE Alu -16 295 45 5112 165 49 17 chrX 112536985 112538140 -50061790 - L1MC1 LINE L1 -116 6217 5025 2534 65 7 0 chrX 112538271 112538580 -50061350 - AluY SINE Alu 0 311 1 27 0 0 0 chrX 112538584 112538611 -50061319 + AT_rich Low_complexity Low_complexity 1 27 0 2139 142 29 58 chrX 112539440 112539855 -50060075 + MER57A LTR ERV1 1 403 0 350 73 0 55 chrX 112540113 112540168 -50059762 - L1PA5 LINE L1 -1884 4262 4211 8938 49 8 0 chrX 112540168 112542050 -50057880 + L1PA5 LINE L1 4255 6146 -8 288 326 80 7 chrX 112542536 112542674 -50057256 - L2 LINE L2 0 3313 3166 682 59 330 0 chrX 112543729 112543847 -50056083 + L1PA3 LINE L1 5999 6155 0 29 0 0 0 chrX 112543847 112543876 -50056054 + AT_rich Low_complexity Low_complexity 1 29 0 2029 245 58 8 chrX 112544548 112545175 -50054755 - L1ME2 LINE L1 0 6233 5545 3550 226 102 47 chrX 112545182 112547328 -50052602 - L1MD2 LINE L1 -16 6343 4077 506 219 7 15 chrX 112547333 112547470 -50052460 - L1ME2 LINE L1 -682 5549 5414 * 537 254 90 37 chrX 112547465 112547764 -50052166 - L1ME2 LINE L1 -1081 5134 4820 3411 158 55 52 chrX 112547764 112548509 -50051421 + LTR1 LTR ERV1 1 747 -38 779 254 11 18 chrX 112548509 112548784 -50051146 - L1ME2 LINE L1 -1392 4823 4551 529 237 24 67 chrX 112548794 112549047 -50050883 - L1ME2 LINE L1 -4281 2115 1874 2574 55 0 3 chrX 112549092 112549400 -50050530 - AluY SINE Alu -4 307 1 1436 250 65 10 chrX 112549428 112549952 -50049978 - L1ME LINE L1 -505 5730 5180 277 258 11 21 chrX 112549989 112550082 -50049848 - L1ME LINE L1 -1134 5081 4990 574 255 7 0 chrX 112550103 112550244 -50049686 - L1ME LINE L1 -4328 2068 1927 23 33 0 0 chrX 112550526 112550556 -50049374 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chrX 112550615 112550643 -50049287 + AT_rich Low_complexity Low_complexity 1 28 0 2259 71 0 4 chrX 112550760 112551041 -50048889 + AluY SINE Alu 17 296 -15 4793 165 35 61 chrX 112551801 112552900 -50047030 - MER11C LTR ERVK 0 1071 1 180 333 37 37 chrX 112553250 112553331 -50046599 + L2 LINE L2 3002 3082 -190 2202 107 10 7 chrX 112553384 112553684 -50046246 + AluSg SINE Alu 1 301 -9 208 319 12 74 chrX 112553701 112553864 -50046066 + L2 LINE L2 3161 3313 0 1366 167 73 42 chrX 112555325 112555455 -50044475 + AluJo SINE Alu 1 125 -187 360 0 0 0 chrX 112555455 112555495 -50044435 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1366 167 73 42 chrX 112555495 112555651 -50044279 + AluJo SINE Alu 125 296 -16 1465 121 31 5 chrX 112555735 112555959 -50043971 - MER30 DNA MER1_type 0 230 1 306 0 0 0 chrX 112556232 112556266 -50043664 + (CA)n Simple_repeat Simple_repeat 2 35 0 280 318 0 12 chrX 112556622 112556707 -50043223 - MIR3 SINE MIR -15 193 110 2289 97 0 0 chrX 112556912 112557211 -50042719 - AluSx SINE Alu -11 301 3 2455 137 24 7 chrX 112557547 112557971 -50041959 + MER95 LTR ERV 1 431 0 750 255 119 13 chrX 112559161 112559396 -50040534 + MIR SINE MIR 3 262 0 489 314 139 59 chrX 112559514 112560289 -50039641 - L2 LINE L2 -196 3076 2253 1683 116 38 0 chrX 112560366 112560633 -50039297 - L1MA3 LINE L1 0 6305 6029 29753 108 16 61 chrX 112561500 112563360 -50036570 - L1PA7 LINE L1 -7 6147 4205 2216 98 0 35 chrX 112563360 112563677 -50036253 - AluSg SINE Alu -4 306 1 29753 108 16 61 chrX 112563677 112568254 -50031676 - L1PA7 LINE L1 -1949 4205 12 1388 215 61 16 chrX 112568438 112568866 -50031064 + L1M4 LINE L1 4777 5223 -923 307 300 140 13 chrX 112569386 112569536 -50030394 + MIR SINE MIR 94 262 0 1769 348 51 22 chrX 112569794 112570933 -50028997 - L2 LINE L2 -67 3246 2073 2941 6 0 0 chrX 112572245 112572561 -50027369 + AluYb8 SINE Alu 1 316 -2 28 29 0 0 chrX 112572597 112572632 -50027298 + AT_rich Low_complexity Low_complexity 1 35 0 209 343 14 14 chrX 112572764 112572834 -50027096 + L2 LINE L2 3201 3270 -2 2346 84 0 3 chrX 112572860 112573158 -50026772 - AluSp SINE Alu -16 297 1 305 106 0 0 chrX 112576268 112576315 -50023615 + MADE1 DNA Mariner 2 48 -32 312 306 90 14 chrX 112576445 112576589 -50023341 + MLT2E LTR ERVL 33 187 -441 2473 54 3 0 chrX 112580113 112580411 -50019519 - AluY SINE Alu -11 300 2 223 159 23 0 chrX 112580632 112580676 -50019254 + L2 LINE L2 3269 3313 0 227 361 7 56 chrX 112581366 112581510 -50018420 - MIR SINE MIR -66 196 60 352 329 40 26 chrX 112582317 112582469 -50017461 - MIR3 SINE MIR -52 156 3 184 277 0 0 chrX 112582589 112582636 -50017294 + MER5B DNA MER1_type 3 49 -129 273 308 125 17 chrX 112582671 112582791 -50017139 + MER5A DNA MER1_type 51 183 -6 258 298 38 99 chrX 112582832 112582963 -50016967 - MER5B DNA MER1_type -35 143 21 2230 99 3 20 chrX 112583103 112583407 -50016523 + AluSq SINE Alu 1 299 -14 3218 19 0 5 chrX 112583722 112584099 -50015831 + L1PA3 LINE L1 5781 6155 0 2163 121 0 0 chrX 112584241 112584561 -50015369 - AluSx SINE Alu 0 320 1 1849 205 33 18 chrX 112585188 112585578 -50014352 + MSTD LTR MaLR 1 396 0 196 339 109 22 chrX 112585902 112586085 -50013845 - L2 LINE L2 -1 3312 3114 568 247 26 37 chrX 112586329 112586439 -50013491 - HERV16 LTR ERVL -3983 1013 904 1166 184 35 4 chrX 112586439 112586667 -50013263 - MER46A DNA MER2_type -1 235 1 568 247 26 37 chrX 112586667 112586746 -50013184 - HERV16 LTR ERVL -4092 904 826 759 316 39 26 chrX 112586884 112587442 -50012488 - HERV16 LTR ERVL -4379 617 3 651 283 21 0 chrX 112587450 112587641 -50012289 - LTR16A LTR ERVL -6 444 250 23 86 0 0 chrX 112588104 112588162 -50011768 + AT_rich Low_complexity Low_complexity 1 58 0 313 315 88 8 chrX 112588170 112588430 -50011500 - L1MC4a LINE L1 -1666 6142 5862 308 337 0 0 chrX 112589414 112589506 -50010424 - MIR SINE MIR -63 145 54 209 195 24 0 chrX 112590077 112590118 -50009812 + CT-rich Low_complexity Low_complexity 1 42 0 23 92 0 0 chrX 112590704 112590769 -50009161 + AT_rich Low_complexity Low_complexity 1 65 0 203 150 50 33 chrX 112591395 112591455 -50008475 + T-rich Low_complexity Low_complexity 3 63 0 851 191 67 13 chrX 112591494 112591806 -50008124 - MER93b LTR ERV1 0 373 12 729 135 0 0 chrX 112591824 112591928 -50008002 - FLAM_A SINE Alu -19 123 20 3240 67 35 5 chrX 112592174 112592605 -50007325 + MLT2A1 LTR ERVL 1 444 0 23521 67 8 1 chrX 112592605 112595695 -50004235 + HERVL-A1 LTR ERVL 1 3110 -2544 8095 69 27 0 chrX 112595692 112596793 -50003137 + HERVL-A1 LTR ERVL 4524 5654 0 * 3407 67 25 2 chrX 112596793 112597227 -50002703 + MLT2A1 LTR ERVL 1 444 0 205 255 21 0 chrX 112597317 112597364 -50002566 + MIR SINE MIR 156 203 -59 933 218 6 0 chrX 112597400 112597574 -50002356 + MER45A DNA AcHobo 4 178 0 2418 87 3 0 chrX 112598751 112599063 -50000867 - AluSp SINE Alu 0 313 1 1125 118 0 34 chrX 112599364 112599542 -50000388 + FRAM SINE Alu 1 165 -11 366 228 168 0 chrX 112600760 112600861 -49999069 + MER5C DNA MER1_type 1 118 -206 1912 139 52 27 chrX 112604418 112604784 -49995146 - THE1C LTR MaLR 0 375 1 389 326 15 30 chrX 112604832 112604967 -49994963 + MIR SINE MIR 22 154 -108 833 233 6 0 chrX 112605266 112605438 -49994492 - FAM SINE Alu -1 174 2 832 267 24 5 chrX 112605697 112605907 -49994023 - MIR SINE MIR -31 231 18 400 311 93 32 chrX 112605993 112606168 -49993762 + MIR3 SINE MIR 7 197 -11 301 422 56 12 chrX 112607056 112607217 -49992713 + L2 LINE L2 3104 3271 -1 1617 211 18 23 chrX 112607835 112608224 -49991706 + MLT1B LTR MaLR 1 387 -3 362 336 116 65 chrX 112608246 112608695 -49991235 - L3b LINE CR1 -10 1573 1102 1890 156 10 0 chrX 112609414 112609709 -49990221 - AluSx SINE Alu -14 298 1 257 333 143 11 chrX 112610133 112610322 -49989608 + MIR SINE MIR 37 250 -12 1200 105 52 12 chrX 112610501 112610673 -49989257 - AluSg/x SINE Alu -1 311 133 358 361 62 21 chrX 112610673 112611011 -49988919 - L3 LINE CR1 -1225 352 1 1458 144 19 57 chrX 112611194 112611458 -49988472 + AluJo SINE Alu 42 295 -17 200 139 0 28 chrX 112612268 112612304 -49987626 + MER5B DNA MER1_type 1 35 -143 1541 50 0 0 chrX 112612306 112612504 -49987426 + L1P2 LINE L1 5367 5564 -590 276 304 69 29 chrX 112612505 112612607 -49987323 - MER5B DNA MER1_type -71 107 2 413 316 35 0 chrX 112613219 112613333 -49986597 - L2 LINE L2 -1 3312 3195 7098 52 7 1 chrX 112614297 112615299 -49984631 + L1PA6 LINE L1 5144 6151 -3 439 280 88 0 chrX 112616007 112616132 -49983798 - L2 LINE L2 0 3272 3137 2356 127 25 0 chrX 112616544 112616899 -49983031 - THE1B LTR MaLR 0 364 1 372 290 14 48 chrX 112618152 112618297 -49981633 - MIR SINE MIR -56 206 67 421 252 82 27 chrX 112619016 112619163 -49980767 - MIR SINE MIR -42 220 66 1181 200 53 41 chrX 112619229 112619569 -49980361 + MER2 DNA MER2_type 1 344 0 209 81 0 27 chrX 112619824 112619861 -49980069 + (TAA)n Simple_repeat Simple_repeat 1 36 0 476 291 130 30 chrX 112619904 112620265 -49979665 + L1M4 LINE L1 2788 3184 -2962 1734 173 47 7 chrX 112620782 112621082 -49978848 + AluJo SINE Alu 1 312 0 24 67 0 0 chrX 112621094 112621139 -49978791 + AT_rich Low_complexity Low_complexity 1 45 0 192 276 0 0 chrX 112621368 112621426 -49978504 + L2 LINE L2 1313 1370 -1944 683 190 109 6 chrX 112621437 112621611 -49978319 - MER39 LTR ERV1 -515 192 1 995 211 0 52 chrX 112623232 112623426 -49976504 - MER5A DNA MER1_type -5 184 1 3004 152 110 55 chrX 112623448 112624118 -49975812 + MER39 LTR ERV1 1 707 0 277 138 11 170 chrX 112624220 112624314 -49975616 + Tigger5 DNA MER2_type 1 79 -2244 280 219 21 52 chrX 112624525 112624621 -49975309 - MER92B LTR ERV1 -7 629 537 738 193 145 19 chrX 112626484 112626525 -49973405 + MER34C LTR ERV1 1 35 -550 2011 151 7 3 chrX 112626525 112626824 -49973106 + AluJb SINE Alu 1 300 -12 738 193 145 19 chrX 112626824 112626989 -49972941 + MER34C LTR ERV1 35 233 -352 423 251 57 8 chrX 112627015 112627267 -49972663 + LTR48 LTR ERV1 382 734 -53 363 157 29 0 chrX 112627234 112627304 -49972626 + MER34 LTR ERV1 450 521 -21 * 2107 109 5 81 chrX 112627309 112627693 -49972237 + THE1A LTR MaLR 1 355 0 10742 94 23 3 chrX 112627694 112629235 -49970695 + THE1A-int LTR MaLR 2 1573 -7 2053 122 5 64 chrX 112629241 112629618 -49970312 + THE1A LTR MaLR 1 355 0 221 250 0 167 chrX 112629654 112629774 -49970156 + MIR SINE MIR 92 191 -71 2118 86 14 14 chrX 112630041 112630321 -49969609 - AluY SINE Alu -15 296 17 186 278 0 100 chrX 112630388 112630478 -49969452 - MIR3 SINE MIR -11 197 117 837 171 10 65 chrX 112631100 112631299 -49968631 + LTR49 LTR ERV1 1 188 -407 2253 135 58 8 chrX 112631336 112631735 -49968195 + MSTA LTR MaLR 10 428 0 667 193 154 120 chrX 112631739 112632148 -49967782 + LTR49 LTR ERV1 173 595 0 914 168 0 0 chrX 112632372 112632546 -49967384 + AluSg/x SINE Alu 141 314 0 21 36 0 0 chrX 112633153 112633181 -49966749 + AT_rich Low_complexity Low_complexity 1 28 0 369 401 9 9 chrX 112633659 112633881 -49966049 - L3 LINE CR1 -306 1271 1050 335 255 10 31 chrX 112633892 112633990 -49965940 - MIR SINE MIR -113 149 54 302 274 75 28 chrX 112634429 112634535 -49965395 - MIR SINE MIR -73 135 25 735 323 127 19 chrX 112635104 112635512 -49964418 - L3 LINE CR1 -147 1430 939 2421 91 13 0 chrX 112635512 112635820 -49964110 - AluSx SINE Alu 0 312 1 735 323 127 19 chrX 112635820 112635993 -49963937 - L3 LINE CR1 -638 939 786 3409 115 57 23 chrX 112636012 112636587 -49963343 + LTR49 LTR ERV1 1 595 0 688 294 204 9 chrX 112637768 112638318 -49961612 + L1MB2 LINE L1 5342 5998 -173 * 1665 270 24 6 chrX 112637909 112638484 -49961446 + L1ME1 LINE L1 5549 6161 -5 1336 151 92 42 chrX 112638806 112639090 -49960840 - AluJo SINE Alu -14 298 1 350 214 214 0 chrX 112640417 112640515 -49959415 - L2 LINE L2 0 3313 3195 249 266 98 52 chrX 112640553 112640726 -49959204 - L1ME3A LINE L1 -70 6100 5920 339 212 20 0 chrX 112640742 112640841 -49959089 - L1ME3A LINE L1 -210 5960 5860 299 221 5 168 chrX 112640954 112641144 -49958786 - L1ME2 LINE L1 -191 5973 5815 388 190 11 22 chrX 112641169 112641276 -49958654 - L1MDb LINE L1 -5043 1342 1138 390 242 65 0 chrX 112641441 112641565 -49958365 - LTR48 LTR ERV1 -42 745 614 1017 201 127 38 chrX 112641578 112641917 -49958013 - LTR48 LTR ERV1 -287 500 132 1863 69 0 0 chrX 112641922 112642153 -49957777 + AluY SINE Alu 1 231 -80 196 371 156 0 chrX 112642166 112642352 -49957578 - L2 LINE L2 -655 2659 2445 279 388 75 5 chrX 112642419 112642633 -49957297 - L2 LINE L2 -1037 2277 2049 754 236 91 49 chrX 112642983 112643369 -49956561 + L1ME1 LINE L1 4265 4666 -1480 3012 118 30 28 chrX 112643377 112643463 -49956467 + MER34B LTR ERV1 2 86 -479 2105 69 48 7 chrX 112643463 112643752 -49956178 + AluY SINE Alu 1 301 -10 3012 118 30 28 chrX 112643752 112643886 -49956044 + MER34B LTR ERV1 86 218 -347 3173 156 79 0 chrX 112643886 112644445 -49955485 + LTR26 LTR ERV1 1 603 0 3012 118 30 28 chrX 112644445 112644757 -49955173 + MER34B LTR ERV1 218 536 -29 1023 245 78 23 chrX 112644792 112645269 -49954661 + L1ME1 LINE L1 4698 5200 -946 2635 11 0 0 chrX 112645277 112645627 -49954303 - L1PA5 LINE L1 -581 5574 5225 4753 38 0 2 chrX 112645627 112646198 -49953732 + L1PA5 LINE L1 5572 6143 -11 1973 218 52 88 chrX 112646211 112646466 -49953464 + L1ME1 LINE L1 5184 5447 -719 2193 112 10 3 chrX 112646466 112646769 -49953161 + AluSg SINE Alu 1 305 -5 1973 218 52 88 chrX 112646769 112646824 -49953106 + L1ME1 LINE L1 5447 5502 -664 186 43 0 0 chrX 112646824 112646847 -49953083 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1973 218 52 88 chrX 112646847 112647549 -49952381 + L1ME1 LINE L1 5502 6162 -4 2052 97 0 29 chrX 112647799 112648078 -49951852 + AluSx SINE Alu 3 273 -39 510 231 59 59 chrX 112648143 112648329 -49951601 + MIR SINE MIR 70 255 -7 296 136 48 48 chrX 112648742 112648867 -49951063 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 1442 180 68 32 chrX 112648867 112649145 -49950785 - AluJo SINE Alu -24 288 1 556 212 53 16 chrX 112650340 112650455 -49949475 + L1MB7 LINE L1 4141 4267 -1879 1691 174 14 11 chrX 112650455 112650736 -49949194 + AluJo SINE Alu 1 282 -30 556 212 53 16 chrX 112650736 112650809 -49949121 + L1MB7 LINE L1 4267 4336 -1810 1123 137 12 0 chrX 112650812 112650973 -49948957 - AluSx SINE Alu -29 283 121 28852 111 18 66 chrX 112650988 112653751 -49946179 - L1PA7 LINE L1 0 6154 3260 2119 92 4 0 chrX 112653751 112654055 -49945875 - AluY SINE Alu 0 305 1 28852 111 18 66 chrX 112654055 112657753 -49942177 - L1PA7 LINE L1 -2894 3260 12 974 141 0 0 chrX 112657761 112657896 -49942034 - AluSx SINE Alu -175 137 3 3870 195 27 36 chrX 112657900 112658041 -49941889 + L1MB7 LINE L1 4316 4457 -1727 1283 139 28 9 chrX 112658041 112658257 -49941673 - L1PA15 LINE L1 -7 6158 5939 3870 195 27 36 chrX 112658257 112659895 -49940035 + L1MB7 LINE L1 4457 6080 -104 4136 148 40 19 chrX 112659895 112660664 -49939266 + LTR1 LTR ERV1 1 785 0 3870 195 27 36 chrX 112660664 112660760 -49939170 + L1MB7 LINE L1 6080 6175 -9 198 0 0 0 chrX 112660779 112660801 -49939129 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 974 272 75 30 chrX 112660926 112661352 -49938578 + MER68 LTR ERV1 118 562 0 362 297 36 68 chrX 112661364 112661586 -49938344 + MER68-int LTR ERV1 16 230 -3961 * 8971 183 64 32 chrX 112661431 112662514 -49937416 + HERVL68 LTR ERVL 36 1083 -1954 2315 92 0 0 chrX 112662514 112662809 -49937121 + AluSg SINE Alu 1 295 -15 8971 183 64 32 chrX 112662809 112663483 -49936447 + HERVL68 LTR ERVL 1083 1734 -1303 2330 101 3 3 chrX 112663483 112663789 -49936141 - AluSx SINE Alu -6 306 1 8971 183 64 32 chrX 112663789 112664438 -49935492 + HERVL68 LTR ERVL 1734 2496 -541 922 172 41 128 chrX 112664439 112664835 -49935095 - MLT1A1 LTR MaLR -1 395 1 2555 154 68 20 chrX 112664835 112665334 -49934596 + HERVL68 LTR ERVL 2496 3018 -19 2778 192 14 38 chrX 112665350 112665924 -49934006 + MER68 LTR ERV1 1 560 -2 414 352 0 21 chrX 112666369 112666511 -49933419 - MIR SINE MIR -116 146 8 283 293 28 55 chrX 112666736 112666862 -49933068 + L1ME LINE L1 5654 5776 -345 2109 102 0 3 chrX 112666862 112667171 -49932759 + AluSq SINE Alu 1 308 0 283 293 28 55 chrX 112667171 112667224 -49932706 + L1ME LINE L1 5776 5829 -292 35 0 0 0 chrX 112667227 112667262 -49932668 + AT_rich Low_complexity Low_complexity 1 35 0 1459 237 135 41 chrX 112667361 112668000 -49931930 - L1MC4a LINE L1 -407 5755 5328 2330 149 22 10 chrX 112668000 112668039 -49931891 - MLT2D LTR ERVL -1 413 376 360 0 0 0 chrX 112668039 112668079 -49931851 + (TG)n Simple_repeat Simple_repeat 2 41 0 2330 149 22 10 chrX 112668079 112668447 -49931483 - MLT2D LTR ERVL -38 376 1 1459 237 135 41 chrX 112668447 112668517 -49931413 - L1MC4a LINE L1 -834 5328 5266 312 295 103 19 chrX 112668596 112668752 -49931178 - L1MC4a LINE L1 -953 5193 5025 39 22 0 0 chrX 112668756 112668802 -49931128 + AT_rich Low_complexity Low_complexity 1 46 0 290 239 42 30 chrX 112668805 112668972 -49930958 + (TA)n Simple_repeat Simple_repeat 1 169 0 758 263 61 80 chrX 112669029 112669557 -49930373 + MLT2B1 LTR ERVL 3 520 0 281 344 19 23 chrX 112669673 112669935 -49929995 - L1MC4a LINE L1 -1299 4847 4587 26 30 0 0 chrX 112670150 112670183 -49929747 + AT_rich Low_complexity Low_complexity 1 33 0 538 292 91 47 chrX 112670329 112670535 -49929395 - L1MC4a LINE L1 -2003 4143 3947 2332 87 10 0 chrX 112670535 112670833 -49929097 + AluSq SINE Alu 1 301 -12 538 292 91 47 chrX 112670833 112671792 -49928138 - L1MC4a LINE L1 -2199 3947 2927 1071 90 0 0 chrX 112672033 112672166 -49927764 + AluSq/x SINE Alu 3 135 -178 2189 100 0 0 chrX 112672166 112672455 -49927475 + AluY SINE Alu 1 289 -22 273 272 58 3 chrX 112672931 112673030 -49926900 - MIR SINE MIR -64 144 48 597 241 32 25 chrX 112674389 112674547 -49925383 + MIR SINE MIR 53 211 -51 3683 216 12 16 chrX 112674982 112675822 -49924108 - L1ME1 LINE L1 -4 6162 5326 229 161 48 16 chrX 112676021 112676083 -49923847 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 417 257 19 29 chrX 112676381 112676486 -49923444 - L2 LINE L2 -1 3312 3209 3472 131 27 2 chrX 112676568 112677126 -49922804 + LTR24B LTR ERV1 1 572 -4 385 338 25 38 chrX 112677741 112677898 -49922032 + MIR3 SINE MIR 13 167 -41 2348 97 3 0 chrX 112677989 112678300 -49921630 + AluSx SINE Alu 1 312 0 219 247 52 26 chrX 112679565 112679642 -49920288 - MIR3 SINE MIR -1 207 129 628 264 144 5 chrX 112679647 112679855 -49920075 - MIR SINE MIR -8 254 18 294 370 10 0 chrX 112679877 112679977 -49919953 - MIR SINE MIR -76 132 32 4635 27 16 0 chrX 112680201 112680755 -49919175 - L1PA4 LINE L1 -2 6153 5591 2627 137 27 0 chrX 112682722 112683130 -49916800 + MSTC LTR MaLR 10 428 0 267 356 27 13 chrX 112683776 112683890 -49916040 - MIR SINE MIR -13 249 131 2578 147 13 7 chrX 112683890 112684347 -49915583 - L1MA3 LINE L1 0 6305 5846 267 356 27 13 chrX 112684347 112684381 -49915549 - MIR SINE MIR -131 131 99 2106 116 65 14 chrX 112684726 112685081 -49914849 + THE1C LTR MaLR 3 375 0 189 348 90 0 chrX 112685378 112685467 -49914463 - L2 LINE L2 -213 3059 2963 224 349 65 55 chrX 112685557 112685864 -49914066 - L3 LINE CR1 -915 662 353 244 211 42 14 chrX 112685942 112686013 -49913917 + MIR SINE MIR 124 196 -66 22 56 0 0 chrX 112687047 112687083 -49912847 + AT_rich Low_complexity Low_complexity 1 36 0 1432 164 130 7 chrX 112687466 112687810 -49912120 + AluJo SINE Alu 1 377 0 26 0 0 0 chrX 112688077 112688103 -49911827 + AT_rich Low_complexity Low_complexity 1 26 0 2050 179 48 63 chrX 112688560 112689017 -49910913 + MLT2B3 LTR ERVL 105 554 0 180 0 0 0 chrX 112689538 112689558 -49910372 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 23717 173 19 20 chrX 112689560 112693528 -49906402 - L1PA10 LINE L1 -23 6460 2423 2054 146 7 0 chrX 112693528 112693836 -49906094 - AluSx SINE Alu -2 310 1 23717 173 19 20 chrX 112693836 112696256 -49903674 - L1PA10 LINE L1 -4060 2423 2 1461 155 42 110 chrX 112696480 112696906 -49903024 + MLT2C1 LTR ERVL 1 397 0 2887 226 55 17 chrX 112697092 112697814 -49902116 + L1ME1 LINE L1 5410 6159 -7 1411 251 54 13 chrX 112697986 112698377 -49901553 + MLT1J1 LTR MaLR 36 442 -4 528 319 24 0 chrX 112698904 112699070 -49900860 - MIR3 SINE MIR -2 206 37 304 40 40 0 chrX 112699141 112699191 -49900739 + (TG)n Simple_repeat Simple_repeat 2 53 0 2947 217 23 15 chrX 112699813 112700417 -49899513 + MLT1E2 LTR MaLR 18 626 0 5054 125 45 46 chrX 112700567 112700859 -49899071 + Tigger3b DNA MER2_type 1 292 -2736 737 83 42 8 chrX 112700859 112700979 -49898951 - L1PA5 LINE L1 -2 6152 6029 5054 125 45 46 chrX 112700979 112701235 -49898695 + Tigger3b DNA MER2_type 292 547 -2481 3725 129 15 2 chrX 112701235 112701825 -49898105 - L1PB4 LINE L1 0 6156 5559 5054 125 45 46 chrX 112701825 112702240 -49897690 + Tigger3b DNA MER2_type 547 964 -267 1906 160 29 29 chrX 112702240 112702615 -49897315 + THE1C LTR MaLR 1 375 0 10074 119 47 11 chrX 112702615 112704081 -49895849 + THE1C-int LTR MaLR 1 1525 -55 2243 118 0 3 chrX 112704081 112704394 -49895536 - AluSx SINE Alu 0 312 1 10074 119 47 11 chrX 112704394 112704453 -49895477 + THE1C-int LTR MaLR 1525 1580 0 2020 138 29 50 chrX 112704453 112704836 -49895094 + THE1C LTR MaLR 1 375 0 1439 164 42 15 chrX 112704837 112705099 -49894831 + Tigger3b DNA MER2_type 971 1239 -2 271 292 62 22 chrX 112706291 112706398 -49893532 + MIR SINE MIR 40 149 -72 206 266 0 47 chrX 112707572 112707636 -49892294 + L2 LINE L2 3241 3301 -12 6636 209 31 60 chrX 112708027 112709889 -49890041 - L1MC3 LINE L1 -18 7767 5961 440 336 38 0 chrX 112709941 112710072 -49889858 + L2 LINE L2 3137 3272 0 270 333 156 4 chrX 112710133 112710358 -49889572 - L2 LINE L2 -34 3279 3021 1497 211 8 87 chrX 112711195 112711588 -49888342 - MLT1A1 LTR MaLR -3 362 1 189 0 0 0 chrX 112711787 112711808 -49888122 + (TA)n Simple_repeat Simple_repeat 2 22 0 3135 206 36 72 chrX 112713350 112714191 -49885739 - MER21B LTR ERV1 -53 810 1 234 281 60 90 chrX 112714192 112714359 -49885571 + L2 LINE L2 2624 2785 -529 22 35 0 0 chrX 112715517 112715546 -49884384 + AT_rich Low_complexity Low_complexity 1 29 0 434 322 46 11 chrX 112715764 112715938 -49883992 - MIR SINE MIR -81 181 2 680 218 128 0 chrX 112715984 112716163 -49883767 - MIR SINE MIR -10 252 51 213 351 47 34 chrX 112716455 112716603 -49883327 + L2 LINE L2 2736 2885 -429 277 314 52 84 chrX 112716818 112717009 -49882921 - L2 LINE L2 -162 3110 2926 186 189 0 0 chrX 112717076 112717113 -49882817 + (CA)n Simple_repeat Simple_repeat 2 38 0 634 307 25 78 chrX 112717291 112717688 -49882242 - L2 LINE L2 -445 2869 2494 24 32 0 0 chrX 112717777 112717808 -49882122 + AT_rich Low_complexity Low_complexity 1 31 0 742 260 79 32 chrX 112717810 112718125 -49881805 - L1ME3A LINE L1 -28 6953 6624 995 244 101 37 chrX 112718157 112718293 -49881637 - L1ME3A LINE L1 -418 6555 6429 1393 176 23 103 chrX 112718293 112718690 -49881240 - MLT1A1 LTR MaLR 0 365 1 995 244 101 37 chrX 112718690 112718930 -49881000 - L1ME3A LINE L1 -544 6429 6155 1546 286 71 32 chrX 112718944 112719216 -49880714 - L1ME3A LINE L1 -1609 5348 5088 2559 86 14 0 chrX 112719216 112719575 -49880355 - L1MA1 LINE L1 0 6302 5939 1546 286 71 32 chrX 112719575 112720274 -49879656 - L1ME3A LINE L1 -1869 5088 4339 409 250 100 28 chrX 112720436 112720460 -49879470 - L1M3c LINE L1 -5938 203 182 894 179 28 0 chrX 112720460 112720639 -49879291 - L1MB1 LINE L1 -3 6165 5982 409 250 100 28 chrX 112720639 112720794 -49879136 - L1M3c LINE L1 -5959 182 11 242 247 86 11 chrX 112720846 112721020 -49878910 - L1ME3A LINE L1 -2885 4072 3886 1367 269 68 34 chrX 112721375 112721910 -49878020 - L1ME3A LINE L1 -3104 3853 3281 207 100 0 0 chrX 112721910 112721940 -49877990 + (TA)n Simple_repeat Simple_repeat 1 30 0 1367 269 68 34 chrX 112721940 112722196 -49877734 - L1ME3A LINE L1 -3676 3281 3035 399 263 33 26 chrX 112722262 112722414 -49877516 - L1ME3A LINE L1 -4178 2960 2808 269 304 7 43 chrX 112722484 112722622 -49877308 - L1ME3A LINE L1 -4637 2501 2369 * 4530 146 21 3 chrX 112722620 112722969 -49876961 - L1PB4 LINE L1 -2 6154 5813 794 48 48 0 chrX 112722969 112723114 -49876816 + (TA)n Simple_repeat Simple_repeat 1 152 0 4530 146 21 3 chrX 112723114 112723539 -49876391 - L1PB4 LINE L1 -343 5813 5366 3075 180 11 6 chrX 112723557 112724201 -49875729 - L1PB4 LINE L1 -1350 4796 4150 2254 223 53 63 chrX 112724211 112724906 -49875024 + MER76 LTR ERV 1 688 0 305 271 10 21 chrX 112724909 112725005 -49874925 - L1ME3A LINE L1 -4772 2366 2272 1213 137 0 0 chrX 112725078 112725260 -49874670 + MER57A LTR ERV1 1 182 -221 336 115 0 0 chrX 112725276 112725328 -49874602 + MER57B LTR ERV1 383 434 0 635 169 110 7 chrX 112725329 112725465 -49874465 - L1MC3 LINE L1 -961 6824 6675 29 0 0 0 chrX 112725507 112725536 -49874394 + AT_rich Low_complexity Low_complexity 1 29 0 4349 151 16 16 chrX 112725607 112726318 -49873612 + MER50 LTR ERV1 12 722 -12 2846 193 71 47 chrX 112726614 112727534 -49872396 - L1ME3A LINE L1 -4962 1893 960 2052 289 86 21 chrX 112727604 112728266 -49871664 + L1M4b LINE L1 151 855 -6004 36 0 0 0 chrX 112728306 112728342 -49871588 + AT_rich Low_complexity Low_complexity 1 36 0 1114 237 127 40 chrX 112728348 112728851 -49871079 - L1MEc LINE L1 -5052 1344 798 6100 52 13 17 chrX 112728852 112729635 -49870295 - LTR17 LTR ERV1 0 780 1 4065 124 63 63 chrX 112729641 112730256 -49869674 - MER4E LTR ERV1 -5 774 157 2690 146 68 95 chrX 112730256 112730885 -49869045 - LTR9 LTR ERV1 0 612 1 4065 124 63 63 chrX 112730885 112731043 -49868887 - MER4E LTR ERV1 -621 158 1 1295 254 35 48 chrX 112731043 112731188 -49868742 - L1MEc LINE L1 -5593 803 658 3766 129 81 45 chrX 112731188 112731855 -49868075 + LTR8 LTR ERV1 1 691 0 1295 254 35 48 chrX 112731855 112732381 -49867549 - L1MEc LINE L1 -5738 658 36 2675 39 0 0 chrX 112732486 112732796 -49867134 - AluY SINE Alu -1 310 1 1786 177 3 20 chrX 112732980 112733279 -49866651 - AluJo SINE Alu -18 294 1 661 237 88 65 chrX 112733279 112733711 -49866219 - L1MC5 LINE L1 -83 7878 7431 2207 121 0 0 chrX 112733711 112734008 -49865922 - AluSx SINE Alu -15 297 1 661 237 88 65 chrX 112734008 112734085 -49865845 - L1MC5 LINE L1 -530 7431 7357 303 343 0 0 chrX 112734094 112734164 -49865766 + MER58 DNA MER1_type 1 70 -271 236 244 51 39 chrX 112734963 112735041 -49864889 - L2 LINE L2 -964 2350 2272 465 283 114 13 chrX 112735084 112735321 -49864609 + L2 LINE L2 2153 2413 -901 23 33 0 0 chrX 112735577 112735607 -49864323 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 112736096 112736118 -49863812 + AT_rich Low_complexity Low_complexity 1 22 0 269 269 30 30 chrX 112736132 112736199 -49863731 + L2 LINE L2 3154 3220 -52 253 354 44 76 chrX 112736588 112736746 -49863184 + L2 LINE L2 3097 3249 -23 1013 258 46 70 chrX 112736755 112736986 -49862944 - L2 LINE L2 0 3313 3078 2312 161 30 35 chrX 112736986 112737201 -49862729 + MSTB1 LTR MaLR 1 215 -217 2118 135 0 0 chrX 112737201 112737497 -49862433 - AluSx SINE Alu -16 296 1 2312 161 30 35 chrX 112737497 112737715 -49862215 + MSTB1 LTR MaLR 215 432 0 1013 258 46 70 chrX 112737715 112737973 -49861957 - L2 LINE L2 -235 3078 2797 22 35 0 0 chrX 112738842 112738871 -49861059 + AT_rich Low_complexity Low_complexity 1 29 0 423 0 0 0 chrX 112739371 112739418 -49860512 + (TG)n Simple_repeat Simple_repeat 2 48 0 2059 109 23 0 chrX 112739418 112739720 -49860210 - MER7A DNA MER2_type -1 345 39 282 143 0 0 chrX 112739720 112739769 -49860161 + (TA)n Simple_repeat Simple_repeat 2 50 0 207 264 44 44 chrX 112739785 112739876 -49860054 + L2 LINE L2 3223 3313 0 322 313 47 0 chrX 112740512 112740640 -49859290 + MIR3 SINE MIR 69 202 -6 21 0 0 0 chrX 112740867 112740888 -49859042 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrX 112741039 112741061 -49858869 + (A)n Simple_repeat Simple_repeat 1 22 0 559 286 48 9 chrX 112741295 112741505 -49858425 - MIR SINE MIR -27 235 18 183 370 41 14 chrX 112742216 112742289 -49857641 - L2 LINE L2 -47 3225 3151 209 33 33 0 chrX 112742499 112742529 -49857401 + (TC)n Simple_repeat Simple_repeat 2 32 0 2393 68 3 0 chrX 112742687 112742981 -49856949 + AluSp SINE Alu 1 295 -18 217 275 55 92 chrX 112744149 112744258 -49855672 - L2 LINE L2 0 3272 3168 2305 106 0 3 chrX 112745042 112745344 -49854586 - AluSx SINE Alu -11 301 1 201 254 0 0 chrX 112745703 112745762 -49854168 + A-rich Low_complexity Low_complexity 1 59 0 335 252 104 0 chrX 112746282 112746397 -49853533 + L2 LINE L2 2935 3061 -252 2195 163 12 27 chrX 112746411 112746815 -49853115 - MER54A LTR ERVL 0 901 504 2449 182 98 31 chrX 112746820 112747169 -49852761 + LTR27 LTR ERV1 15 420 -216 324 48 0 0 chrX 112747169 112747211 -49852719 + (TCCCC)n Simple_repeat Simple_repeat 1 42 0 2449 182 98 31 chrX 112747211 112747444 -49852486 + LTR27 LTR ERV1 420 636 0 2851 152 40 6 chrX 112747453 112747932 -49851998 - MER54A LTR ERVL -405 496 2 630 263 32 46 chrX 112747940 112748157 -49851773 + L2 LINE L2 3100 3313 0 22 0 0 0 chrX 112748999 112749021 -49850909 + AT_rich Low_complexity Low_complexity 1 22 0 2182 110 3 3 chrX 112749021 112749313 -49850617 - AluSx SINE Alu -20 292 1 572 187 43 14 chrX 112749490 112749629 -49850301 - L1MD2 LINE L1 -10 6349 6207 1756 178 0 3 chrX 112750077 112750381 -49849549 - AluJo SINE Alu -9 303 1 356 338 22 44 chrX 112750575 112750803 -49849127 - MIR SINE MIR -17 245 23 569 306 79 9 chrX 112751630 112751859 -49848071 + MIR SINE MIR 13 257 -5 304 267 33 54 chrX 112751874 112752114 -49847816 - HAL1b LINE L1 -893 455 221 565 274 73 17 chrX 112752166 112752345 -49847585 + MIR SINE MIR 74 262 0 292 260 39 29 chrX 112754138 112754242 -49845688 + MIR SINE MIR 143 247 -15 260 273 13 0 chrX 112754743 112754820 -49845110 + CT-rich Low_complexity Low_complexity 1 78 0 4065 138 13 39 chrX 112755124 112755912 -49844018 - L1MA4 LINE L1 -4 7715 6949 607 111 0 0 chrX 112755918 112756008 -49843922 + L1 LINE L1 4863 4952 -1194 10945 198 93 14 chrX 112756014 112759151 -49840779 - L1MA4 LINE L1 -743 6822 3933 2019 141 20 0 chrX 112759151 112759455 -49840475 - AluSx SINE Alu -2 310 1 10945 198 93 14 chrX 112759455 112762131 -49837799 - L1MA4 LINE L1 -3632 3933 12 192 40 0 0 chrX 112762160 112762185 -49837745 + (TG)n Simple_repeat Simple_repeat 2 26 0 210 135 0 0 chrX 112762220 112762233 -49837697 + (TA)n Simple_repeat Simple_repeat 2 14 -24 2529 182 10 6 chrX 112762233 112762712 -49837218 - L1MB3 LINE L1 -17 6166 5686 210 135 0 0 chrX 112762712 112762735 -49837195 + (TA)n Simple_repeat Simple_repeat 13 38 0 315 356 0 0 chrX 112762738 112762853 -49837077 + L1MC4 LINE L1 6589 6703 -1339 230 273 23 0 chrX 112762888 112762976 -49836954 - L1MC4 LINE L1 -1339 6703 6614 596 194 18 24 chrX 112762976 112763146 -49836784 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 447 309 0 0 chrX 112763087 112763265 -49836665 + (TA)n Simple_repeat Simple_repeat 2 179 0 * 234 0 0 0 chrX 112763279 112763305 -49836625 + (CA)n Simple_repeat Simple_repeat 2 27 0 757 163 15 0 chrX 112763366 112763501 -49836429 + L1MB3 LINE L1 5950 6086 -97 354 23 0 0 chrX 112763501 112763544 -49836386 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2068 195 68 44 chrX 112763575 112764474 -49835456 - L1M3 LINE L1 -501 5682 4745 637 152 0 0 chrX 112764476 112764575 -49835355 - L1M3 LINE L1 -590 5581 5483 2284 103 7 0 chrX 112765353 112765655 -49834275 + AluSx SINE Alu 1 304 -8 21 0 0 0 chrX 112766291 112766312 -49833618 + AT_rich Low_complexity Low_complexity 1 21 0 498 336 60 20 chrX 112766998 112767248 -49832682 - MIR SINE MIR -1 261 2 236 237 51 0 chrX 112767259 112767318 -49832612 + L2 LINE L2 3242 3303 -10 368 323 81 46 chrX 112767627 112768020 -49831910 + L2 LINE L2 2375 2781 -533 192 40 0 0 chrX 112768099 112768124 -49831806 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2537 54 0 6 chrX 112768657 112768970 -49830960 - AluY SINE Alu 0 311 1 712 144 0 25 chrX 112768971 112769089 -49830841 - FRAM SINE Alu -13 163 49 296 262 107 0 chrX 112769346 112769468 -49830462 + L1ME LINE L1 5694 5828 -293 1677 176 3 14 chrX 112769499 112769795 -49830135 - AluJo SINE Alu -19 293 1 451 293 30 30 chrX 112769986 112770119 -49829811 - L2 LINE L2 -1 3312 3180 225 0 0 0 chrX 112770123 112770148 -49829782 + (TA)n Simple_repeat Simple_repeat 2 26 0 235 230 14 68 chrX 112770172 112770246 -49829684 - MLT1K LTR MaLR -5 583 514 1037 226 33 0 chrX 112770453 112770665 -49829265 + MER20 DNA MER1_type 1 219 0 1066 251 15 15 chrX 112770762 112771021 -49828909 - MIR SINE MIR 0 262 4 442 296 17 47 chrX 112771064 112771236 -49828694 - MLT1K LTR MaLR -339 249 83 1915 155 3 22 chrX 112771258 112771575 -49828355 + AluJb SINE Alu 1 311 -1 400 338 47 61 chrX 112771627 112771988 -49827942 + L2 LINE L2 2914 3269 -3 287 179 18 0 chrX 112772202 112772258 -49827672 - MIR3 SINE MIR -1 207 151 1591 161 25 85 chrX 112772316 112772810 -49827120 + L1MB1 LINE L1 4978 5457 -711 2031 148 34 23 chrX 112772812 112773164 -49826766 - MER46B DNA MER2_type -5 231 1 3536 160 36 6 chrX 112773184 112773829 -49826101 + L1MB1 LINE L1 5493 6156 -12 26 30 0 0 chrX 112773829 112773862 -49826068 + AT_rich Low_complexity Low_complexity 1 33 0 239 271 80 0 chrX 112773918 112774054 -49825876 - L1M4 LINE L1 -774 5372 5227 21 0 0 0 chrX 112774168 112774189 -49825741 + AT_rich Low_complexity Low_complexity 1 21 0 2143 129 0 0 chrX 112774313 112774608 -49825322 - AluSp SINE Alu -18 295 1 631 193 28 7 chrX 112775221 112775366 -49824564 - MER103 DNA DNA -8 158 11 2196 95 0 16 chrX 112775412 112775716 -49824214 - AluSq SINE Alu -12 301 3 236 114 45 0 chrX 112775924 112775968 -49823962 + CT-rich Low_complexity Low_complexity 2 47 0 1038 238 14 0 chrX 112775977 112776191 -49823739 - U3 snRNA snRNA 0 217 1 458 290 62 26 chrX 112776277 112776529 -49823401 - L1MEc LINE L1 -910 1666 1442 21 0 0 0 chrX 112776686 112776707 -49823223 + GC_rich Low_complexity Low_complexity 1 21 0 1379 237 93 67 chrX 112777804 112778347 -49821583 + HAL1 LINE L1 1274 1836 -671 2230 138 98 20 chrX 112778347 112778744 -49821186 - MSTA LTR MaLR 0 428 1 1379 237 93 67 chrX 112778744 112778812 -49821118 + HAL1 LINE L1 1836 1901 -606 1175 194 17 19 chrX 112778963 112779263 -49820667 + MLT1A1 LTR MaLR 1 364 -1 475 296 0 7 chrX 112779354 112779489 -49820441 + MER94 DNA DNA 1 134 0 21 0 0 0 chrX 112780027 112780048 -49819882 + AT_rich Low_complexity Low_complexity 1 21 0 2246 99 0 10 chrX 112780506 112780818 -49819112 + AluSg1 SINE Alu 1 309 0 906 164 0 13 chrX 112781713 112781865 -49818065 + U1 snRNA snRNA 13 162 -3 207 0 0 0 chrX 112781872 112781895 -49818035 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chrX 112782720 112782746 -49817184 + AT_rich Low_complexity Low_complexity 1 26 0 3405 107 6 10 chrX 112783346 112783843 -49816087 - LOR1a LTR ERV1 -2 495 1 517 298 91 10 chrX 112784113 112784321 -49815609 - MIR SINE MIR -6 256 32 1031 204 18 62 chrX 112784339 112784613 -49815317 + MIR SINE MIR 1 262 0 223 303 101 25 chrX 112785048 112785167 -49814763 + MIR SINE MIR 80 207 -55 281 261 0 0 chrX 112786700 112786765 -49813165 - MIR3 SINE MIR -23 185 121 25 0 0 0 chrX 112787087 112787112 -49812818 + AT_rich Low_complexity Low_complexity 1 25 0 2324 100 3 3 chrX 112787480 112787791 -49812139 + AluSp SINE Alu 1 311 -2 234 81 0 0 chrX 112788003 112788040 -49811890 + (T)n Simple_repeat Simple_repeat 1 37 0 2237 122 70 54 chrX 112839024 112839401 -49760529 + LTR49 LTR ERV1 136 522 -73 1468 231 20 3 chrX 112839401 112839704 -49760226 - 7SLRNA srpRNA srpRNA -12 308 1 2237 122 70 54 chrX 112839704 112839768 -49760162 + LTR49 LTR ERV1 522 584 -11 1142 133 57 63 chrX 112839810 112840079 -49759851 + MER4A LTR ERV1 1 342 -357 1638 97 0 0 chrX 112840171 112840446 -49759484 + AluSg/x SINE Alu 78 352 0 333 229 24 0 chrX 112840493 112840576 -49759354 + MER4C LTR ERV1 178 262 -203 797 206 5 22 chrX 112840656 112840840 -49759090 + MER4C LTR ERV1 285 465 0 1907 194 94 6 chrX 112840843 112841421 -49758509 + MER4C-int LTR ERV1 1 673 -5925 375 113 42 28 chrX 112841749 112841820 -49758110 + MER4C-int LTR ERV1 742 813 -5785 2295 126 17 80 chrX 112841820 112842281 -49757649 + LOR1a LTR ERV1 66 497 0 2023 180 31 26 chrX 112842281 112842698 -49757232 + LOR1a-int LTR ERV1 1 419 -7701 273 68 23 0 chrX 112842728 112842772 -49757158 + LOR1a-int LTR ERV1 403 447 -7673 562 117 6 181 chrX 112842846 112843017 -49756913 + LOR1a-int LTR ERV1 449 589 -7531 679 343 40 31 chrX 112843408 112844079 -49755851 + LOR1a-int LTR ERV1 955 1631 -5491 198 0 0 0 chrX 112844325 112844347 -49755583 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1791 159 167 14 chrX 112844354 112844725 -49755205 + MSTA LTR MaLR 1 428 0 1587 328 57 53 chrX 112845414 112845867 -49754063 + LOR1a-int LTR ERV1 2556 3006 -4116 790 160 0 15 chrX 112845867 112845998 -49753932 - FLAM_C SINE Alu -4 129 1 1587 328 57 53 chrX 112845998 112847226 -49752704 + LOR1a-int LTR ERV1 3006 4244 -2878 585 313 18 26 chrX 112847668 112848036 -49751894 + LOR1a-int LTR ERV1 5372 5736 -2020 * 3470 125 14 12 chrX 112848027 112848663 -49751267 + LOR1a-int LTR ERV1 7168 7878 -242 637 173 0 0 chrX 112848664 112848768 -49751162 + LOR1a-int LTR ERV1 8017 8120 0 2086 152 62 99 chrX 112848768 112849047 -49750883 + LOR1a LTR ERV1 1 254 -243 2700 85 3 0 chrX 112849047 112849401 -49750529 - THE1A LTR MaLR 0 355 1 2086 152 62 99 chrX 112849401 112849635 -49750295 + LOR1a LTR ERV1 254 495 -2 864 170 127 9 chrX 112849664 112849851 -49750079 + LTR29 LTR ERV1 377 618 -4 1572 186 8 65 chrX 112849857 112850127 -49749803 + LTR29-int LTR ERV1 3 287 -5659 2327 89 13 0 chrX 112850127 112850431 -49749499 - AluSx SINE Alu -2 310 3 1572 186 8 65 chrX 112850431 112850608 -49749322 + LTR29-int LTR ERV1 287 1327 -4619 1081 188 26 28 chrX 112850641 112850923 -49749007 + LTR29-int LTR ERV1 355 1480 -4466 976 187 117 31 chrX 112850919 112851446 -49748484 + MER4A-int LTR ERV1 767 1247 -3633 * 2488 108 56 9 chrX 112851446 112851874 -49748056 + LTR7 LTR ERV1 1 448 -2 976 187 117 31 chrX 112851874 112851943 -49747987 + MER4A-int LTR ERV1 1247 1866 -3014 211 229 12 12 chrX 112851944 112852027 -49747903 + (TG)n Simple_repeat Simple_repeat 1 83 0 1096 225 53 69 chrX 112852027 112852740 -49747190 + MER4A-int LTR ERV1 1112 2436 -3510 * 2296 145 90 90 chrX 112852708 112852771 -49747159 + MER4A-int LTR ERV1 2580 2642 -3689 2139 133 0 3 chrX 112852771 112853079 -49746851 + AluSx SINE Alu 1 307 -5 2296 145 90 90 chrX 112853079 112853651 -49746279 + MER4A-int LTR ERV1 2641 3215 -3116 2288 70 18 3 chrX 112853655 112853940 -49745990 + LTR5 LTR ERVK 2 290 -679 1029 84 96 42 chrX 112853959 112854125 -49745805 + LTR5 LTR ERVK 795 969 0 1677 222 62 21 chrX 112854222 112854690 -49745240 + MER4A-int LTR ERV1 2675 3161 -1719 357 24 0 0 chrX 112854691 112854733 -49745197 + (TA)n Simple_repeat Simple_repeat 1 42 0 2765 68 21 5 chrX 112854733 112855116 -49744814 - MLT2A1 LTR ERVL -55 389 1 1246 154 97 0 chrX 112855119 112855366 -49744564 + MER4A-int LTR ERV1 4530 4800 -3320 344 94 0 0 chrX 112855366 112855419 -49744511 + MLT2A2 LTR ERVL 401 453 0 954 159 77 95 chrX 112855420 112855747 -49744183 - LTR49-int LTR ERV1 -2243 4088 3768 4144 141 30 57 chrX 112855749 112856271 -49743659 + MER4A-int LTR ERV1 5048 5583 -1015 2571 41 0 0 chrX 112856271 112856566 -49743364 - AluY SINE Alu -12 299 5 4144 141 30 57 chrX 112856566 112857164 -49742766 + MER4A-int LTR ERV1 5583 6584 -14 1276 120 65 151 chrX 112857187 112857662 -49742268 + MER4A LTR ERV1 1 522 -177 695 223 11 22 chrX 112857674 112857858 -49742072 + MER4C LTR ERV1 276 457 -8 189 350 70 10 chrX 112858182 112858282 -49741648 + MIR3 SINE MIR 54 159 -49 24 53 0 0 chrX 112858895 112858933 -49740997 + AT_rich Low_complexity Low_complexity 1 38 0 459 284 116 47 chrX 112859069 112859284 -49740646 + MIR SINE MIR 26 255 -7 406 332 93 45 chrX 112859537 112859826 -49740104 - L2 LINE L2 0 3272 2970 195 369 76 55 chrX 112859876 112860535 -49739395 - L2 LINE L2 -456 2858 2186 2335 181 54 27 chrX 112860619 112861176 -49738754 - LTR49 LTR ERV1 -23 572 1 1374 259 34 77 chrX 112861302 112861427 -49738503 + MLT1F LTR MaLR 1 130 -412 2212 110 7 7 chrX 112861427 112861728 -49738202 + AluSx SINE Alu 1 301 -11 1374 259 34 77 chrX 112861728 112862158 -49737772 + MLT1F LTR MaLR 130 532 -10 1656 53 0 0 chrX 112862342 112862549 -49737381 + L1PA5 LINE L1 5948 6154 0 432 246 9 44 chrX 112862554 112862668 -49737262 - MER81 DNA DNA -4 110 1 299 294 69 0 chrX 112862679 112862781 -49737149 + L2 LINE L2 3205 3313 0 377 343 39 17 chrX 112862901 112863079 -49736851 - L2 LINE L2 -485 2829 2648 2007 95 0 4 chrX 112863356 112863629 -49736301 + AluY SINE Alu 1 272 -39 465 84 0 28 chrX 112864197 112864291 -49735639 - AluY SINE Alu 0 311 218 23 0 0 0 chrX 112864694 112864717 -49735213 + AT_rich Low_complexity Low_complexity 1 23 0 342 244 1 86 chrX 112865820 112865960 -49733970 - MLT1J LTR MaLR -306 144 25 288 331 39 15 chrX 112866042 112866172 -49733758 - L2 LINE L2 -611 2703 2571 2266 126 3 0 chrX 112866663 112866972 -49732958 + AluSx SINE Alu 1 310 -2 200 359 0 0 chrX 112867427 112867505 -49732425 + (CCCTG)n Simple_repeat Simple_repeat 3 80 0 2429 78 3 7 chrX 112867518 112867827 -49732103 - AluSq SINE Alu 0 313 6 203 286 0 0 chrX 112867949 112868012 -49731918 + (CCCTG)n Simple_repeat Simple_repeat 5 67 0 1142 219 140 58 chrX 112868873 112869289 -49730641 + MLT1D LTR MaLR 1 460 -45 2213 138 105 8 chrX 112869289 112869679 -49730251 - MSTA LTR MaLR 0 428 1 1142 219 140 58 chrX 112869679 112869727 -49730203 + MLT1D LTR MaLR 460 503 -2 3382 197 27 91 chrX 112869730 112870721 -49729209 + MLT1D-int LTR MaLR 1 928 -443 1650 220 93 4 chrX 112870731 112871226 -49728704 + L1ME2 LINE L1 5625 6163 -1 543 329 139 4 chrX 112871314 112871606 -49728324 + L2 LINE L2 2739 3067 -246 3945 205 66 53 chrX 112871609 112872895 -49727035 - L1MB7 LINE L1 -16 6666 5397 2228 72 7 20 chrX 112872895 112873187 -49726743 + AluSx SINE Alu 24 311 -1 3945 205 66 53 chrX 112873187 112874022 -49725908 - L1MB7 LINE L1 -1285 5397 4488 1806 74 5 0 chrX 112874022 112874239 -49725691 - AluSg SINE Alu -77 233 16 3945 205 66 53 chrX 112874239 112874392 -49725538 - L1MB7 LINE L1 -2194 4488 4338 1738 249 33 24 chrX 112874388 112874590 -49725340 - L1MB7 LINE L1 -5984 558 359 * 1509 201 35 51 chrX 112874590 112874984 -49724946 + MLT1B LTR MaLR 3 390 0 1738 249 33 24 chrX 112874984 112875330 -49724600 - L1MB7 LINE L1 -6183 359 5 1630 180 0 27 chrX 112875420 112875715 -49724215 + AluJo SINE Alu 1 287 -25 323 271 25 91 chrX 112875728 112875927 -49724003 + L2 LINE L2 3127 3312 -1 194 281 52 62 chrX 112875923 112876019 -49723911 - L2 LINE L2 -10 3262 3168 * 470 254 22 0 chrX 112876609 112876747 -49723183 - L1ME2 LINE L1 -215 5949 5809 248 313 21 0 chrX 112877402 112877498 -49722432 - L1MC3 LINE L1 -1629 6156 6059 486 287 50 58 chrX 112877875 112878133 -49721797 + MIR SINE MIR 3 258 -4 2244 121 0 0 chrX 112878238 112878545 -49721385 + AluSx SINE Alu 6 312 0 1031 267 20 82 chrX 112878757 112878825 -49721105 - LTR16B LTR ERVL 0 464 393 2420 90 0 3 chrX 112878825 112879136 -49720794 + AluSg SINE Alu 1 310 0 1031 267 20 82 chrX 112879136 112879554 -49720376 - LTR16B LTR ERVL -71 393 8 2004 141 26 32 chrX 112879565 112879942 -49719988 - THE1C LTR MaLR 0 375 1 239 241 0 0 chrX 112880000 112880058 -49719872 + L1ME LINE L1 5604 5661 -460 200 98 0 24 chrX 112880147 112880188 -49719742 + (TAAAA)n Simple_repeat Simple_repeat 5 44 0 3143 42 0 0 chrX 112880586 112880965 -49718965 - L1PA7 LINE L1 -8 6146 5768 2290 78 0 0 chrX 112881104 112881408 -49718522 - AluSg SINE Alu 0 304 1 27 29 0 0 chrX 112881917 112881951 -49717979 + AT_rich Low_complexity Low_complexity 1 34 0 1775 208 66 33 chrX 112882209 112882691 -49717239 - MLT1D LTR MaLR -7 498 1 361 236 132 0 chrX 112882931 112883037 -49716893 - L2 LINE L2 0 3313 3194 1178 172 54 93 chrX 112883053 112883618 -49716312 + MER4A LTR ERV1 1 465 0 245 273 162 10 chrX 112883638 112883737 -49716193 - L2 LINE L2 -164 3149 3036 180 77 0 0 chrX 112883741 112883767 -49716163 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 404 277 164 13 chrX 112883896 112884055 -49715875 + MER5A DNA MER1_type 1 183 -6 7223 42 0 10 chrX 112884171 112885109 -49714821 - L1PA5 LINE L1 -1 6153 5213 189 311 27 27 chrX 112885566 112885640 -49714290 - L2 LINE L2 -830 2484 2411 24 0 0 0 chrX 112886087 112886111 -49713819 + AT_rich Low_complexity Low_complexity 1 24 0 2292 52 13 33 chrX 112886163 112886468 -49713462 - AluY SINE Alu -12 299 1 234 62 0 0 chrX 112886750 112886782 -49713148 + (GA)n Simple_repeat Simple_repeat 2 33 0 1799 282 56 40 chrX 112887120 112888128 -49711802 + L1ME LINE L1 6 1029 -5041 1953 136 0 30 chrX 112888510 112888811 -49711119 - AluSx SINE Alu -20 292 1 2079 130 0 34 chrX 112889091 112889414 -49710516 + AluSx SINE Alu 1 312 0 37 76 0 0 chrX 112890023 112890102 -49709828 + AT_rich Low_complexity Low_complexity 1 79 0 23 0 0 0 chrX 112890178 112890201 -49709729 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 112890511 112890534 -49709396 + AT_rich Low_complexity Low_complexity 1 23 0 375 273 0 0 chrX 112890586 112890674 -49709256 - MIR SINE MIR -1 261 174 282 363 27 0 chrX 112891218 112891364 -49708566 - MIR SINE MIR -50 212 63 1202 147 37 6 chrX 112891818 112892226 -49707704 - LTR54 LTR ERV1 0 510 5 484 213 22 59 chrX 112892616 112892641 -49707289 + MLT1A2 LTR MaLR 145 169 -205 1851 118 107 11 chrX 112892641 112892921 -49707009 + AluSx SINE Alu 3 309 -3 484 213 22 59 chrX 112892921 112893031 -49706899 + MLT1A2 LTR MaLR 169 275 -99 628 144 15 30 chrX 112893360 112893492 -49706438 - L1 LINE L1 -1920 4226 4097 3446 102 45 6 chrX 112893527 112894019 -49705911 + MER9 LTR ERVK 1 511 0 914 244 36 17 chrX 112894033 112894394 -49705536 - L1M4b LINE L1 -3400 3557 3190 2727 133 14 7 chrX 112894403 112894824 -49705106 - MSTB LTR MaLR -2 424 1 187 329 40 40 chrX 112894909 112894985 -49704945 - L2 LINE L2 -336 2977 2902 793 162 45 7 chrX 112895330 112895536 -49704394 + L1M4 LINE L1 5260 5474 -704 2313 91 7 0 chrX 112895578 112895876 -49704054 - AluSp SINE Alu -13 300 1 308 285 40 36 chrX 112895885 112896162 -49703768 - L1M4b LINE L1 -5262 1685 1328 455 226 16 97 chrX 112896385 112896571 -49703359 + MER58C DNA MER1_type 45 215 0 411 269 28 0 chrX 112897013 112897121 -49702809 - MIR SINE MIR -68 194 84 532 86 0 12 chrX 112897630 112897711 -49702219 + MADE1 DNA Mariner 1 80 0 910 245 47 47 chrX 112898336 112898716 -49701214 + LTR40c LTR ERVL 1 380 -85 798 267 21 21 chrX 112898780 112899020 -49700910 - MLT1H1 LTR MaLR -25 530 291 750 278 14 5 chrX 112899136 112899348 -49700582 + L1M3d LINE L1 381 594 -5677 2302 271 19 35 chrX 112899353 112900097 -49699833 + L1M3d LINE L1 30 761 -5520 1823 285 40 45 chrX 112900201 112901188 -49698742 + L1M3d LINE L1 630 1719 -4552 2037 205 95 30 chrX 112901291 112901892 -49698038 + LTR48B LTR ERV1 1 640 -4 2168 55 37 0 chrX 112902054 112902373 -49697557 + AluY SINE Alu 1 329 0 2437 86 133 5 chrX 112903073 112903470 -49696460 + LTR7 LTR ERV1 1 448 -2 15679 95 26 22 chrX 112903472 112906387 -49693543 + HERVH LTR ERV1 1 2995 -4718 5728 93 3 2 chrX 112906366 112907218 -49692712 + HERVH LTR ERV1 3140 3992 -3721 * 1166 137 0 0 chrX 112907221 112907404 -49692526 + HERVH LTR ERV1 4488 4670 -3043 * 3296 173 0 3 chrX 112907401 112907975 -49691955 + HERVH LTR ERV1 4575 5146 -2567 1290 134 19 0 chrX 112907979 112908195 -49691735 + HERVH LTR ERV1 5600 5819 -1894 2063 118 48 13 chrX 112908195 112908568 -49691362 + HERVH LTR ERV1 7324 7709 -4 2570 247 12 27 chrX 112908625 112909088 -49690842 + MER21B LTR ERV1 1 469 -394 2463 84 0 6 chrX 112909088 112909399 -49690531 - AluSx SINE Alu -3 309 1 2570 247 12 27 chrX 112909399 112909429 -49690501 + MER21B LTR ERV1 469 498 -365 2135 103 3 0 chrX 112909429 112909734 -49690196 + AluSq SINE Alu 1 306 0 2570 247 12 27 chrX 112909734 112909902 -49690028 + MER21B LTR ERV1 498 654 -209 1023 154 0 6 chrX 112909904 112910060 -49689870 + AluSc SINE Alu 131 285 -24 2162 113 7 0 chrX 112910069 112910392 -49689538 + AluSx SINE Alu 1 325 0 304 256 0 0 chrX 112910392 112910470 -49689460 + LTR1B LTR ERV1 7 84 -742 189 0 0 0 chrX 112910483 112910504 -49689426 + (A)n Simple_repeat Simple_repeat 1 21 0 520 254 29 19 chrX 112910518 112910723 -49689207 - LTR7 LTR ERV1 -6 444 238 1558 166 52 4 chrX 112910973 112911244 -49688686 + AluJb SINE Alu 3 286 -26 24 0 0 0 chrX 112911247 112911271 -49688659 + AT_rich Low_complexity Low_complexity 1 24 0 2400 56 0 0 chrX 112911271 112911575 -49688355 + AluY SINE Alu 1 304 0 235 368 16 24 chrX 112911955 112912080 -49687850 + L2 LINE L2 2943 3066 -206 617 287 86 10 chrX 112912106 112912315 -49687615 + MIR SINE MIR 38 262 0 513 235 34 47 chrX 112912495 112912644 -49687286 + L2 LINE L2 3167 3313 0 2012 130 20 7 chrX 112912672 112912973 -49686957 - AluSx SINE Alu -7 305 1 2458 172 55 110 chrX 112913218 112913963 -49685967 + MER50 LTR ERV1 1 704 -30 2716 65 119 5 chrX 112914231 112914633 -49685297 + LTR7 LTR ERV1 1 448 -2 2189 199 46 70 chrX 112914763 112915331 -49684599 + MLT2B3 LTR ERVL 1 554 0 1497 100 60 16 chrX 112915362 112915613 -49684317 + MER4E-int LTR ERV1 3925 4186 -2572 12592 107 32 45 chrX 112915617 112915867 -49684063 + MER4E-int LTR ERV1 4321 4573 -2185 2000 107 11 0 chrX 112915867 112916175 -49683755 + AluSx SINE Alu 1 284 -28 12592 107 32 45 chrX 112916175 112916661 -49683269 + MER4E-int LTR ERV1 4573 5064 -1694 1758 147 60 68 chrX 112916661 112917028 -49682902 - THE1B LTR MaLR 0 364 1 12592 107 32 45 chrX 112917028 112917260 -49682670 + MER4E-int LTR ERV1 5064 5297 -1461 2550 44 3 25 chrX 112917260 112917578 -49682352 - AluY SINE Alu 0 311 1 12592 107 32 45 chrX 112917578 112917878 -49682052 + MER4E-int LTR ERV1 5297 5599 -1159 2930 112 12 2 chrX 112917878 112918308 -49681622 - MER57B LTR ERV1 0 434 1 12592 107 32 45 chrX 112918308 112918985 -49680945 + MER4E-int LTR ERV1 5599 6241 -517 2235 103 10 0 chrX 112918985 112919285 -49680645 + AluY SINE Alu 1 303 -8 12592 107 32 45 chrX 112919285 112919522 -49680408 + MER4E-int LTR ERV1 6241 6480 -278 1074 121 0 0 chrX 112919522 112919663 -49680267 + AluSq/x SINE Alu 1 141 -172 649 137 0 0 chrX 112919677 112919772 -49680158 - AluSg/x SINE Alu -17 292 198 1036 105 0 0 chrX 112919772 112919905 -49680025 + AluSg/x SINE Alu 166 298 -12 1678 90 23 63 chrX 112919905 112920143 -49679787 + MER4E-int LTR ERV1 6471 6696 -62 4546 106 55 40 chrX 112920143 112920588 -49679342 + MER4E LTR ERV1 2 464 -315 2249 103 6 6 chrX 112920588 112920899 -49679031 - AluSq SINE Alu -2 311 1 4546 106 55 40 chrX 112920899 112921220 -49678710 + MER4E LTR ERV1 464 779 0 1678 90 23 63 chrX 112921220 112921281 -49678649 + MER4E-int LTR ERV1 6696 6758 0 1987 136 69 73 chrX 112921281 112921621 -49678309 + MER4B LTR ERV1 1 340 -270 2213 111 3 0 chrX 112921621 112921909 -49678021 - AluSq SINE Alu -24 289 1 1987 136 69 73 chrX 112921909 112922018 -49677912 + MER4B LTR ERV1 340 448 -162 1575 176 106 31 chrX 112922021 112922446 -49677484 - LTR2B LTR ERV1 0 490 34 1019 106 0 0 chrX 112922470 112922612 -49677318 + MER4A LTR ERV1 506 647 -17 418 244 0 0 chrX 112922612 112922698 -49677232 - AluJ/FLAM SINE Alu -226 86 1 2147 130 0 7 chrX 112922844 112923145 -49676785 - AluSx SINE Alu -13 299 1 517 346 35 29 chrX 112923154 112923528 -49676402 - L2 LINE L2 -230 3042 2411 818 141 50 15 chrX 112923528 112923726 -49676204 - L1MA8 LINE L1 -5 6286 6082 226 116 23 0 chrX 112923760 112923803 -49676127 + L1MA8 LINE L1 6069 6112 -179 * 2875 149 19 28 chrX 112923782 112924345 -49675585 - L1MA8 LINE L1 -204 6087 5530 238 250 68 11 chrX 112924468 112924556 -49675374 - MLT1I LTR MaLR 0 409 317 374 276 60 9 chrX 112924681 112924797 -49675133 - MLT1I LTR MaLR -204 205 84 243 240 0 0 chrX 112925152 112925202 -49674728 - L2 LINE L2 -76 3237 3188 207 0 0 0 chrX 112925420 112925443 -49674487 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1992 92 44 7 chrX 112925450 112925722 -49674208 - AluSg1 SINE Alu -27 282 1 1878 155 10 0 chrX 112926046 112926337 -49673593 + AluSx SINE Alu 1 294 -18 2029 136 0 3 chrX 112926340 112926665 -49673265 + AluSx SINE Alu 1 312 0 2161 109 10 0 chrX 112927022 112927316 -49672614 + AluY SINE Alu 1 297 -14 2687 93 3 0 chrX 112927361 112927715 -49672215 + THE1A LTR MaLR 1 355 0 2178 92 0 3 chrX 112927774 112928077 -49671853 + AluSq SINE Alu 1 302 0 2248 116 0 3 chrX 112928145 112928448 -49671482 + AluSg SINE Alu 1 302 -8 1131 185 105 32 chrX 112929714 112930028 -49669902 + MLT1D LTR MaLR 1 337 -168 198 324 27 14 chrX 112930210 112930284 -49669646 + L3 LINE CR1 1486 1560 -17 448 298 8 0 chrX 112930459 112930580 -49669350 + L2 LINE L2 3192 3313 0 375 331 25 25 chrX 112930841 112931001 -49668929 + L3 LINE CR1 492 651 -926 1439 188 38 48 chrX 112931004 112931297 -49668633 - AluJo SINE Alu -17 295 6 497 290 284 28 chrX 112931313 112931813 -49668117 + L3 LINE CR1 639 1266 -311 270 329 51 0 chrX 112931823 112931902 -49668028 + MIR SINE MIR 6 88 -174 1435 213 130 84 chrX 112931902 112932384 -49667546 - MER39 LTR ERV1 0 707 184 1845 178 0 6 chrX 112932384 112932698 -49667232 - AluJo SINE Alu 0 312 1 1435 213 130 84 chrX 112932698 112932882 -49667048 - MER39 LTR ERV1 -523 184 10 292 153 0 34 chrX 112932891 112932950 -49666980 + MIR SINE MIR 85 141 -121 24 0 0 0 chrX 112933004 112933028 -49666902 + AT_rich Low_complexity Low_complexity 1 24 0 204 310 18 44 chrX 112933109 112933222 -49666708 + MIR SINE MIR 146 255 -7 318 276 0 0 chrX 112933233 112933309 -49666621 + MIR SINE MIR 165 240 -22 2463 96 0 25 chrX 112933328 112933665 -49666265 - L1PA14 LINE L1 -2 6159 5830 2187 126 33 0 chrX 112933665 112933967 -49665963 - AluSx SINE Alu 0 312 1 2463 96 0 25 chrX 112933967 112933994 -49665936 - L1PA14 LINE L1 -331 5830 5804 348 118 0 0 chrX 112934296 112934347 -49665583 + L2 LINE L2 3256 3306 -7 724 97 56 81 chrX 112934383 112934435 -49665495 - MER39B LTR ERV1 -1 652 600 3749 110 18 18 chrX 112934435 112935000 -49664930 + MER61E LTR ERV1 1 565 -4 724 97 56 81 chrX 112935000 112935125 -49664805 - MER39B LTR ERV1 -53 600 454 427 65 0 0 chrX 112935125 112935187 -49664743 - MER57B LTR ERV1 -2 432 371 1455 101 0 0 chrX 112935188 112935387 -49664543 - MER57B LTR ERV1 -235 199 1 1617 101 260 6 chrX 112935392 112935730 -49664200 - LTR29 LTR ERV1 -198 424 1 2032 136 34 0 chrX 112936454 112936748 -49663182 - AluSx SINE Alu -7 305 2 405 269 70 31 chrX 112938982 112939239 -49660691 - L1MC4a LINE L1 -1876 5932 5666 28 0 0 0 chrX 112939282 112939310 -49660620 + AT_rich Low_complexity Low_complexity 1 28 0 209 289 105 61 chrX 112939343 112939457 -49660473 - L2 LINE L2 -23 3290 3172 203 346 55 39 chrX 112939585 112939712 -49660218 - L2 LINE L2 -241 3031 2903 1912 119 22 7 chrX 112940099 112940410 -49659520 - AluSx SINE Alu 0 315 1 180 77 0 0 chrX 112940659 112940685 -49659245 + (TTA)n Simple_repeat Simple_repeat 2 27 0 699 275 78 59 chrX 112940739 112941113 -49658817 - MLT1J1 LTR MaLR 0 446 66 7076 56 0 4 chrX 112941866 112942853 -49657077 - L1PA6 LINE L1 -5 6149 5163 4582 212 92 50 chrX 112942954 112944587 -49655343 - L1MC4 LINE L1 0 8042 6342 445 263 113 8 chrX 112944590 112944723 -49655207 - L1MC4a LINE L1 -1480 6328 6182 21 57 0 0 chrX 112944840 112944875 -49655055 + AT_rich Low_complexity Low_complexity 1 35 0 6748 56 0 0 chrX 112945404 112946482 -49653448 - L1PA5 LINE L1 0 6154 5104 27 29 0 0 chrX 112946574 112946608 -49653322 + AT_rich Low_complexity Low_complexity 1 34 0 36 53 0 0 chrX 112946822 112946879 -49653051 + AT_rich Low_complexity Low_complexity 1 57 0 1662 173 0 24 chrX 112946879 112947168 -49652762 + AluJo SINE Alu 1 282 -30 198 0 0 0 chrX 112947440 112947462 -49652468 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 32 43 0 0 chrX 112947545 112947591 -49652339 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chrX 112947601 112947637 -49652293 + AT_rich Low_complexity Low_complexity 1 36 0 2146 98 4 0 chrX 112947673 112947947 -49651983 - AluSq SINE Alu -38 275 1 262 297 126 18 chrX 112948513 112948624 -49651306 + L2 LINE L2 2222 2344 -970 265 249 55 55 chrX 112948691 112948856 -49651074 + L1M4 LINE L1 2679 2843 -3303 513 249 49 41 chrX 112948929 112949207 -49650723 - L1M4 LINE L1 -3828 2816 2535 16931 159 25 14 chrX 112949241 112949422 -49650508 + L1MA2 LINE L1 20 198 -7525 1887 142 10 10 chrX 112949422 112949725 -49650205 - AluJo SINE Alu -9 303 1 226 158 0 0 chrX 112949726 112949764 -49650166 - Alu SINE Alu -258 50 13 16931 159 25 14 chrX 112949764 112953646 -49646284 + L1MA2 LINE L1 198 4691 -3032 1733 175 7 0 chrX 112953646 112953915 -49646015 + AluJb SINE Alu 3 273 -39 16931 159 25 14 chrX 112953915 112956982 -49642948 + L1MA2 LINE L1 4691 7723 0 3149 236 64 39 chrX 112957075 112957912 -49642018 - L1M4 LINE L1 -4203 2443 1465 2241 120 3 0 chrX 112957912 112958212 -49641718 - AluSq SINE Alu -12 301 1 3149 236 64 39 chrX 112958212 112958718 -49641212 - L1M4 LINE L1 -5181 1465 973 996 153 0 0 chrX 112958740 112958890 -49641040 - AluJb SINE Alu -26 286 137 2438 249 62 45 chrX 112958898 112959286 -49640644 - L1M4 LINE L1 -5556 986 606 1654 162 63 33 chrX 112959286 112959589 -49640341 - AluJo SINE Alu 0 312 1 2438 249 62 45 chrX 112959589 112960160 -49639770 - L1M4 LINE L1 -5936 606 10 216 97 0 0 chrX 112960879 112960910 -49639020 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 814 118 0 7 chrX 112961518 112961653 -49638277 + L1PA6 LINE L1 6021 6154 0 784 272 62 5 chrX 112962042 112962266 -49637664 + MIR SINE MIR 26 262 0 374 277 75 11 chrX 112962360 112962454 -49637476 + L2 LINE L2 3134 3233 -39 234 303 45 0 chrX 112965829 112965895 -49634035 + MIR SINE MIR 42 110 -98 204 114 0 29 chrX 112965947 112965982 -49633948 + (ATG)n Simple_repeat Simple_repeat 2 35 0 1147 246 48 89 chrX 112966729 112967290 -49632640 + MER34 LTR ERV1 2 539 -3 2416 99 0 0 chrX 112967387 112967700 -49632230 + AluSq SINE Alu 1 313 0 560 265 142 19 chrX 112967881 112968092 -49631838 - MIR SINE MIR -18 244 8 283 339 57 0 chrX 112969170 112969294 -49630636 + L2 LINE L2 2842 2972 -341 1140 244 99 9 chrX 112969487 112969819 -49630111 + MER67C LTR ERV1 1 362 -348 501 247 93 6 chrX 112969811 112969973 -49629957 + MER67C LTR ERV1 472 647 -63 * 460 192 20 0 chrX 112970000 112970099 -49629831 + MER67C LTR ERV1 610 710 0 304 386 9 0 chrX 112970103 112970217 -49629713 + L2 LINE L2 3158 3272 0 597 313 43 19 chrX 112970283 112970494 -49629436 + MIR SINE MIR 34 249 -13 242 203 40 40 chrX 112971069 112971143 -49628787 - MER34 LTR ERV1 -16 526 453 2344 105 16 29 chrX 112971222 112971602 -49628328 + THE1C LTR MaLR 1 375 0 2067 131 0 7 chrX 112971629 112971942 -49627988 + AluSx SINE Alu 4 312 0 764 187 82 91 chrX 112971949 112972279 -49627651 - MER34C LTR ERV1 -229 356 45 360 0 0 0 chrX 112972399 112972439 -49627491 + (TG)n Simple_repeat Simple_repeat 2 41 0 359 219 14 0 chrX 112972988 112973061 -49626869 - MARNA DNA Mariner -355 231 158 287 291 55 36 chrX 112973299 112973409 -49626521 - MARNA DNA Mariner -465 121 10 4509 105 6 1 chrX 112974773 112975421 -49624509 - MER39B LTR ERV1 0 653 3 309 341 41 6 chrX 112975919 112976089 -49623841 + MIR SINE MIR 86 261 -1 392 258 45 52 chrX 112976194 112976349 -49623581 - MIR SINE MIR -86 176 23 21 36 0 0 chrX 112976701 112976729 -49623201 + AT_rich Low_complexity Low_complexity 1 28 0 554 193 0 15 chrX 112976731 112976866 -49623064 - L1MA6 LINE L1 0 6300 6168 659 273 80 89 chrX 112977154 112977491 -49622439 - MER102b DNA MER1_type -7 334 1 464 240 0 0 chrX 112977595 112977695 -49622235 + MIR SINE MIR 102 201 -61 429 284 73 68 chrX 112978341 112978722 -49621208 - L1ME LINE L1 -336 5785 5403 600 244 133 22 chrX 112979007 112979232 -49620698 - MIR SINE MIR 0 262 13 418 171 86 9 chrX 112979233 112979338 -49620592 - MER67A LTR ERV1 -2 541 429 589 171 29 12 chrX 112979340 112979511 -49620419 - L1M LINE L1 -844 5302 5135 222 37 0 0 chrX 112979580 112979607 -49620323 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1632 186 0 7 chrX 112979610 112979889 -49620041 - AluJo SINE Alu -30 282 6 180 323 40 40 chrX 112980368 112980492 -49619438 - MIR SINE MIR -3 259 136 36 0 0 0 chrX 112981271 112981307 -49618623 + AT_rich Low_complexity Low_complexity 1 36 0 321 26 0 0 chrX 112981407 112981445 -49618485 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chrX 112981642 112981665 -49618265 + AT_rich Low_complexity Low_complexity 1 23 0 1078 227 113 87 chrX 112982035 112982682 -49617248 + L1MCc LINE L1 809 1472 -4951 917 202 69 0 chrX 112982685 112982858 -49617072 - MER58A DNA MER1_type 0 224 40 463 280 13 85 chrX 112982883 112983201 -49616729 + L1MCc LINE L1 1483 1777 -5164 274 68 0 0 chrX 112983265 112983309 -49616621 - L1MA3 LINE L1 0 6305 6262 932 272 84 11 chrX 112983326 112983790 -49616140 + L1MCc LINE L1 1983 2480 -4642 902 293 83 31 chrX 112983794 112984627 -49615303 + L1M4 LINE L1 4252 5135 -1011 2176 99 3 3 chrX 112984627 112984921 -49615009 + AluSx SINE Alu 1 294 -18 902 293 83 31 chrX 112984921 112984964 -49614966 + L1M4 LINE L1 5135 5174 -972 32427 105 12 54 chrX 112984969 112991284 -49608646 - L1PA7 LINE L1 -107 6047 12 478 276 36 59 chrX 112991908 112992129 -49607801 + MARNA DNA Mariner 37 252 -334 289 122 0 0 chrX 112993116 112993165 -49606765 - L1MA3 LINE L1 0 6305 6257 6362 94 30 4 chrX 112993175 112994102 -49605828 - L1MA1 LINE L1 0 6302 5352 376 319 28 21 chrX 112994648 112994792 -49605138 - MIR SINE MIR -60 202 58 5696 101 22 10 chrX 112995340 112996114 -49603816 + L1PB1 LINE L1 5000 5792 -359 309 51 0 0 chrX 112996114 112996153 -49603777 + (TA)n Simple_repeat Simple_repeat 2 40 0 5696 101 22 10 chrX 112996153 112996502 -49603428 + L1PB1 LINE L1 5792 6135 -16 267 146 0 0 chrX 112996518 112996573 -49603357 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 223 354 0 0 chrX 112997196 112997275 -49602655 - MIR SINE MIR -20 242 164 364 140 0 0 chrX 112997317 112997367 -49602563 - 5S rRNA rRNA -71 50 1 457 257 44 9 chrX 112997370 112997483 -49602447 - MIR SINE MIR -116 146 30 339 294 59 7 chrX 112997497 112997633 -49602297 - MER113 DNA MER1_type? -2 519 377 883 158 0 0 chrX 112997656 112997789 -49602141 + FLAM_C SINE Alu 1 133 0 202 196 0 130 chrX 112997905 112997997 -49601933 + L2 LINE L2 3234 3313 0 482 286 38 0 chrX 112997999 112998132 -49601798 - MER113 DNA MER1_type? -140 381 244 1778 162 0 23 chrX 112998132 112998434 -49601496 + AluJb SINE Alu 1 295 -17 395 272 68 6 chrX 112998452 112998614 -49601316 - MER113 DNA MER1_type? -322 199 28 1827 192 48 92 chrX 112999378 112999483 -49600447 - MER69 DNA AcHobo -41 2485 2377 2282 95 0 0 chrX 112999483 112999777 -49600153 - AluSx SINE Alu -8 304 11 1827 192 48 92 chrX 112999777 113000322 -49599608 - MER69 DNA AcHobo -149 2377 1864 1147 206 72 34 chrX 113000321 113000583 -49599347 - MER69 DNA AcHobo -2254 272 1 * 2612 45 0 3 chrX 113000700 113001009 -49598921 + AluY SINE Alu 1 308 -3 510 292 45 34 chrX 113001946 113002364 -49597566 + L1MC5 LINE L1 7475 7897 -64 298 333 28 7 chrX 113002675 113002816 -49597114 - MIR SINE MIR -3 259 116 454 263 106 61 chrX 113002966 113003164 -49596766 - MIR SINE MIR -38 224 18 311 335 136 7 chrX 113003894 113004049 -49595881 + MIR3 SINE MIR 29 203 -5 186 43 0 0 chrX 113004329 113004352 -49595578 + (T)n Simple_repeat Simple_repeat 1 23 0 195 139 0 0 chrX 113004835 113004871 -49595059 + (TC)n Simple_repeat Simple_repeat 1 36 0 650 171 0 0 chrX 113006723 113006834 -49593096 - L1MC1 LINE L1 0 6333 6223 24 53 0 0 chrX 113007644 113007682 -49592248 + AT_rich Low_complexity Low_complexity 1 38 0 3691 230 70 26 chrX 113008863 113010876 -49589054 + L1MD2 LINE L1 4244 6343 -16 210 240 0 0 chrX 113010877 113010927 -49589003 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 31 44 0 0 chrX 113011330 113011375 -49588555 + AT_rich Low_complexity Low_complexity 1 45 0 656 324 75 54 chrX 113011836 113012013 -49587917 - L2 LINE L2 -1 3312 3140 2259 99 0 13 chrX 113012013 113012327 -49587603 - AluSg SINE Alu 0 310 1 656 324 75 54 chrX 113012327 113012835 -49587095 - L2 LINE L2 -173 3140 2610 1838 174 26 17 chrX 113013315 113013400 -49586530 - MER7A DNA MER2_type -2693 345 262 1950 153 125 13 chrX 113013400 113013785 -49586145 + MSTA LTR MaLR 1 428 0 1838 174 26 17 chrX 113013785 113014043 -49585887 - MER7A DNA MER2_type -2776 262 1 3088 126 27 42 chrX 113014210 113014604 -49585326 + L1MA8 LINE L1 5706 6089 -202 1869 95 112 62 chrX 113014604 113014961 -49584969 + THE1C LTR MaLR 1 375 0 3088 126 27 42 chrX 113014961 113015161 -49584769 + L1MA8 LINE L1 6089 6291 0 310 241 109 22 chrX 113015514 113015651 -49584279 - MER103 DNA DNA 0 166 18 225 94 0 0 chrX 113016203 113016235 -49583695 + (TG)n Simple_repeat Simple_repeat 2 33 0 1098 233 144 5 chrX 113016261 113016664 -49583266 + L1ME3 LINE L1 5616 6074 -88 190 410 27 16 chrX 113017123 113017311 -49582619 - L2 LINE L2 -279 2993 2804 949 301 4 0 chrX 113017523 113017749 -49582181 - MIR SINE MIR -34 228 2 3567 171 37 3 chrX 113018532 113019240 -49580690 + L1MB3 LINE L1 5450 6181 -2 1805 167 0 14 chrX 113019248 113019541 -49580389 + AluJb SINE Alu 1 289 -23 1650 159 14 21 chrX 113019661 113019966 -49579964 - AluJo SINE Alu 0 312 14 185 375 0 0 chrX 113020478 113020542 -49579388 - MIR SINE MIR -105 103 40 27 29 0 0 chrX 113020997 113021031 -49578899 + AT_rich Low_complexity Low_complexity 1 34 0 980 208 8 54 chrX 113021316 113021556 -49578374 + AluJo SINE Alu 1 229 -83 611 249 26 79 chrX 113021780 113022085 -49577845 - L1MC4a LINE L1 -1899 5909 5621 326 323 108 25 chrX 113022120 113022436 -49577494 - L1MEc LINE L1 -2694 3386 3045 28 0 0 0 chrX 113023557 113023585 -49576345 + AT_rich Low_complexity Low_complexity 1 28 0 6182 144 29 7 chrX 113023585 113025017 -49574913 - L1MA4A LINE L1 0 7005 5549 5396 174 31 11 chrX 113025014 113025955 -49573975 - L1MA4A LINE L1 -5889 960 1 * 330 266 0 38 chrX 113026355 113026434 -49573496 - MLT2E LTR ERVL -515 113 38 21 0 0 0 chrX 113026610 113026631 -49573299 + AT_rich Low_complexity Low_complexity 1 21 0 688 266 35 20 chrX 113026667 113026870 -49573060 - MIR SINE MIR -49 213 8 250 240 0 13 chrX 113027098 113027173 -49572757 - HAL1b LINE L1 -556 792 719 601 296 47 22 chrX 113027247 113027524 -49572406 - HAL1b LINE L1 -859 489 206 1943 152 0 17 chrX 113027668 113027965 -49571965 + AluJo SINE Alu 1 292 -20 201 108 0 0 chrX 113027972 113028009 -49571921 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1592 311 24 9 chrX 113028899 113029740 -49570190 - L1MEc LINE L1 -3320 2760 1950 1223 287 78 39 chrX 113029734 113029993 -49569937 - L1MEc LINE L1 -5082 988 741 * 5939 137 21 34 chrX 113029993 113031074 -49568856 - MER11C LTR ERVK -4 1067 1 1223 287 78 39 chrX 113031074 113031452 -49568478 - L1MEc LINE L1 -5329 741 326 316 319 65 42 chrX 113031538 113031754 -49568176 - L1MEc LINE L1 -5844 226 6 26 0 0 0 chrX 113031863 113031889 -49568041 + AT_rich Low_complexity Low_complexity 1 26 0 243 279 109 7 chrX 113031945 113032092 -49567838 + L1M4 LINE L1 2463 2624 -3522 320 318 45 0 chrX 113033233 113033365 -49566565 - L1MDa LINE L1 -4738 1906 1769 634 286 112 72 chrX 113033379 113034301 -49565629 - L1MDa LINE L1 -4881 1753 795 202 310 0 0 chrX 113034439 113034497 -49565433 + CT-rich Low_complexity Low_complexity 3 60 0 31 0 0 0 chrX 113034542 113034573 -49565357 + AT_rich Low_complexity Low_complexity 1 31 0 1742 99 7 4 chrX 113034573 113034846 -49565084 - L1MA5A LINE L1 0 6297 6024 187 233 47 0 chrX 113035248 113035291 -49564639 - MIR3 SINE MIR -44 164 120 304 345 37 28 chrX 113035995 113036191 -49563739 - MIR SINE MIR -66 142 2 195 290 200 40 chrX 113036769 113036869 -49563061 - L2 LINE L2 -14 3258 3143 1828 146 10 19 chrX 113037718 113038027 -49561903 - AluJb SINE Alu -2 310 5 188 400 38 0 chrX 113038075 113038155 -49561775 - L2 LINE L2 0 3313 3231 642 132 15 66 chrX 113039048 113039184 -49560746 - L1M4 LINE L1 -463 5721 5593 3446 224 36 27 chrX 113039186 113039959 -49559971 - L1MB5 LINE L1 0 6174 5390 1910 159 7 10 chrX 113039959 113040267 -49559663 - AluJb SINE Alu -5 307 1 3446 224 36 27 chrX 113040267 113040569 -49559361 - L1MB5 LINE L1 -784 5390 5092 1325 223 54 8 chrX 113040578 113040950 -49558980 - L1MB5 LINE L1 -3108 3038 2650 1976 241 71 30 chrX 113040957 113041562 -49558368 - L1MDa LINE L1 -5905 637 8 1831 141 50 19 chrX 113041597 113041916 -49558014 + Tigger2a DNA MER2_type 1 329 -105 552 279 113 34 chrX 113041986 113042251 -49557679 - L1MEc LINE L1 -6072 324 39 245 311 0 14 chrX 113043167 113043241 -49556689 - L2 LINE L2 0 3313 3241 336 349 17 23 chrX 113043273 113043445 -49556485 - L3 LINE CR1 -119 1458 1288 233 338 69 21 chrX 113043592 113043737 -49556193 - L3 LINE CR1 -359 1218 1067 208 390 89 0 chrX 113043830 113043953 -49555977 - MIR3 SINE MIR -11 197 64 284 213 138 56 chrX 113044188 113044350 -49555580 + MLT1H LTR MaLR 3 148 -302 6269 185 39 20 chrX 113044928 113046202 -49553728 + L1MC1 LINE L1 25 1323 -5103 31146 118 13 63 chrX 113046206 113052017 -49547913 + L1P3 LINE L1 12 5521 -633 784 158 235 17 chrX 113052017 113052251 -49547679 + LTR12 LTR ERV1 1 285 -429 328 206 0 0 chrX 113052252 113052320 -49547610 + LTR30 LTR ERV1 553 620 -102 500 205 71 9 chrX 113052320 113052432 -49547498 + LTR12 LTR ERV1 355 473 -241 4922 64 8 3 chrX 113052432 113053093 -49546837 + L1PA7 LINE L1 5511 6174 0 7324 235 61 8 chrX 113053094 113053775 -49546155 + L1MC1 LINE L1 1304 1947 -4479 1991 128 0 50 chrX 113053775 113054096 -49545834 + AluSq SINE Alu 1 305 -8 7324 235 61 8 chrX 113054096 113056541 -49543389 + L1MC1 LINE L1 1947 4749 -1677 2232 176 15 55 chrX 113056560 113057033 -49542897 + L1PB4 LINE L1 5684 6137 -19 3861 199 33 11 chrX 113057058 113057938 -49541992 + L1MC1 LINE L1 4754 5673 -940 270 0 0 0 chrX 113057938 113057968 -49541962 + (TA)n Simple_repeat Simple_repeat 1 30 0 3861 199 33 11 chrX 113057968 113058545 -49541385 + L1MC1 LINE L1 5673 6236 -377 2072 154 28 6 chrX 113058546 113058902 -49541028 - THE1B LTR MaLR 0 364 1 10878 96 36 10 chrX 113058907 113060442 -49539488 - THE1B-int LTR MaLR -6 1574 1 1935 116 119 6 chrX 113060442 113060769 -49539161 - THE1B LTR MaLR 0 364 1 2198 141 11 8 chrX 113060779 113061149 -49538781 + L1MC1 LINE L1 6243 6613 0 2258 114 7 0 chrX 113061534 113061842 -49538088 - AluSx SINE Alu -2 310 1 257 287 39 8 chrX 113062795 113062924 -49537006 + HAL1 LINE L1 1113 1245 -1262 851 226 50 73 chrX 113062928 113063189 -49536741 - MIR SINE MIR -5 257 3 227 308 167 17 chrX 113063199 113063498 -49536432 + HAL1 LINE L1 1249 1592 -915 332 231 0 0 chrX 113063509 113063574 -49536356 - MER5A DNA MER1_type -83 106 42 717 278 49 33 chrX 113064070 113064596 -49535334 + L1MCc LINE L1 1168 1862 -4916 335 276 37 22 chrX 113064614 113064748 -49535182 + L1MCc LINE L1 1968 2103 -5019 3530 125 54 23 chrX 113064749 113064910 -49535020 + MER73 LTR ERVL 15 170 -474 4352 99 28 6 chrX 113064910 113065549 -49534381 - MER39B LTR ERV1 0 653 1 3530 125 54 23 chrX 113065549 113065658 -49534272 + MER73 LTR ERVL 170 274 -370 321 47 0 0 chrX 113065658 113065701 -49534229 + (GA)n Simple_repeat Simple_repeat 2 44 0 3530 125 54 23 chrX 113065701 113066039 -49533891 + MER73 LTR ERVL 274 643 -1 227 231 0 0 chrX 113066040 113066105 -49533825 + L1MCc LINE L1 2054 2118 -4823 254 189 19 0 chrX 113066111 113066164 -49533766 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1081 320 43 24 chrX 113066185 113066601 -49533329 + LTR16A LTR ERVL 21 444 -6 544 272 52 26 chrX 113066636 113067131 -49532799 + L1MCc LINE L1 2570 3130 -3992 3186 81 0 0 chrX 113267204 113267647 -49332283 - L1P LINE L1 -2533 3613 3171 471 241 93 0 chrX 113267658 113267766 -49332164 - FLAM_A SINE Alu -19 123 6 29 0 0 0 chrX 113267837 113267866 -49332064 + AT_rich Low_complexity Low_complexity 1 29 0 3454 222 36 27 chrX 113267889 113269117 -49330813 - L1ME1 LINE L1 -1 6177 4942 4959 184 23 18 chrX 113269147 113271069 -49328861 - L1MB5 LINE L1 0 6184 4219 969 268 16 21 chrX 113271079 113271467 -49328463 - L1MB5 LINE L1 -2734 3412 3027 770 320 111 31 chrX 113271525 113272300 -49327630 - L2 LINE L2 -740 2574 1738 29 28 0 0 chrX 113274219 113274255 -49325675 + AT_rich Low_complexity Low_complexity 1 36 0 592 152 0 10 chrX 113275402 113275501 -49324429 + MER4A LTR ERV1 1 98 -566 1881 137 3 19 chrX 113275501 113275852 -49324078 + MER4A LTR ERV1 261 664 0 2637 93 74 12 chrX 113275854 113276348 -49323582 + MER4A-int LTR ERV1 1 589 -6009 259 156 0 111 chrX 113276397 113276487 -49323443 + MER4A-int LTR ERV1 751 830 -5768 474 158 58 137 chrX 113276533 113276694 -49323236 + MER4A-int LTR ERV1 1265 2004 -4327 466 129 0 0 chrX 113276694 113276764 -49323166 + MER4A LTR ERV1 595 664 0 1877 148 13 7 chrX 113276880 113277183 -49322747 - AluSx SINE Alu -7 305 1 2089 124 3 7 chrX 113277233 113277532 -49322398 - AluSx SINE Alu -14 298 1 27 73 0 0 chrX 113277626 113277681 -49322249 + AT_rich Low_complexity Low_complexity 1 55 0 27 29 0 0 chrX 113278352 113278386 -49321544 + AT_rich Low_complexity Low_complexity 1 34 0 195 274 170 78 chrX 113278673 113278826 -49321104 + MER5A DNA MER1_type 1 167 -22 * 388 210 7 4 chrX 113278752 113278834 -49321096 - MER5A DNA MER1_type -80 103 16 23 54 0 0 chrX 113279695 113279732 -49320198 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chrX 113279847 113279883 -49320047 + AT_rich Low_complexity Low_complexity 1 36 0 192 381 52 0 chrX 113279970 113280067 -49319863 - MIR3 SINE MIR -1 207 106 230 314 0 43 chrX 113280260 113280330 -49319600 - L2 LINE L2 -20 3293 3227 1548 171 95 0 chrX 113280441 113280715 -49319215 + AluJb SINE Alu 1 300 -12 1831 136 43 9 chrX 113280870 113281215 -49318715 - L1MA9 LINE L1 0 6312 5956 1311 175 18 9 chrX 113281215 113281444 -49318486 - MLT1A1 LTR MaLR -23 342 112 23507 159 54 21 chrX 113281468 113283894 -49316036 - L1PA11 LINE L1 -16 6473 4128 369 62 0 0 chrX 113283894 113283942 -49315988 + (TTG)n Simple_repeat Simple_repeat 3 50 0 23507 159 54 21 chrX 113283942 113287617 -49312313 - L1PA11 LINE L1 -2361 4128 4 585 198 43 0 chrX 113287617 113287733 -49312197 - MLT1A1 LTR MaLR -244 121 1 12753 163 26 45 chrX 113287733 113288579 -49311351 - L1MA9 LINE L1 -336 5976 5115 2282 89 10 0 chrX 113288579 113288882 -49311048 - AluSc SINE Alu -3 306 1 12753 163 26 45 chrX 113288882 113291651 -49308279 - L1MA9 LINE L1 -1197 5115 2446 648 235 47 52 chrX 113291909 113292122 -49307808 - MIR SINE MIR 0 262 51 2472 136 26 7 chrX 113292258 113292949 -49306981 - L1P4 LINE L1 -552 5611 4915 2958 91 37 0 chrX 113292949 113293376 -49306554 + L1PA13 LINE L1 5717 6161 -2 32 0 0 0 chrX 113293435 113293467 -49306463 + AT_rich Low_complexity Low_complexity 1 32 0 324 296 74 19 chrX 113293544 113293652 -49306278 - L2 LINE L2 -6 3266 3153 2430 198 24 13 chrX 113293745 113294304 -49305626 + MLT2B1 LTR ERVL 1 548 -6 1388 150 33 4 chrX 113294311 113294551 -49305379 + MLT1A1-int LTR MaLR 1489 1735 0 2029 158 14 33 chrX 113294560 113294922 -49305008 + MLT1A1 LTR MaLR 10 364 -1 1220 307 139 67 chrX 113295754 113296679 -49303251 + L2 LINE L2 1363 2220 -1093 593 247 46 29 chrX 113296679 113296853 -49303077 + MER5B DNA MER1_type 1 177 -1 1220 307 139 67 chrX 113296853 113297733 -49302197 + L2 LINE L2 2220 3312 -1 44411 35 1 4 chrX 113299235 113305410 -49294520 + L1PA3 LINE L1 1 6155 0 584 308 173 10 chrX 113305523 113306432 -49293498 - L1M4 LINE L1 -1299 4847 3791 2636 107 0 6 chrX 113306872 113307238 -49292692 - THE1B LTR MaLR 0 364 1 10862 98 18 29 chrX 113307238 113308837 -49291093 - THE1B-int LTR MaLR 0 1580 1 2720 98 0 8 chrX 113308837 113309204 -49290726 - THE1B LTR MaLR 0 364 1 322 180 49 0 chrX 113309403 113309464 -49290466 + L1M4 LINE L1 5 68 -6474 233 111 0 0 chrX 113309464 113309500 -49290430 + MER51A LTR ERV1 1 36 -598 * 1403 184 81 26 chrX 113309498 113309845 -49290085 + MER51A LTR ERV1 257 622 -12 5282 236 95 31 chrX 113309856 113311780 -49288150 + L1M4 LINE L1 48 2080 -4566 1372 164 11 19 chrX 113311905 113312173 -49287757 + LTR13 LTR ERVK 1 266 -741 2772 163 42 9 chrX 113312205 113312752 -49287178 + L1MB7 LINE L1 5619 6183 -1 252 255 96 65 chrX 113312803 113313297 -49286633 + L1M4 LINE L1 2642 3169 -3475 759 364 116 18 chrX 113313312 113314104 -49285826 - L2 LINE L2 -2236 1078 209 661 290 22 33 chrX 113314378 113314654 -49285276 - L1MC4 LINE L1 -462 7580 7308 463 351 108 30 chrX 113315081 113315583 -49284347 - L2 LINE L2 -450 2864 2324 324 0 0 0 chrX 113318730 113318766 -49281164 + (CA)n Simple_repeat Simple_repeat 2 37 0 652 239 20 21 chrX 113319467 113319727 -49280203 + MLT1J2 LTR MaLR 21 282 -164 307 211 0 42 chrX 113319859 113319930 -49280000 + L2 LINE L2 3244 3311 -2 553 227 26 26 chrX 113320075 113320229 -49279701 - MIR SINE MIR -77 185 32 1901 171 3 7 chrX 113320485 113320772 -49279158 + AluJb SINE Alu 1 286 -26 373 110 24 0 chrX 113320772 113320854 -49279076 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 264 130 0 0 chrX 113321950 113321996 -49277934 + L1PA8 LINE L1 6122 6167 -5 316 206 62 0 chrX 113321996 113322093 -49277837 + Charlie7 DNA MER1_type 583 685 -1927 244 237 21 31 chrX 113322114 113322211 -49277719 + Charlie7 DNA MER1_type 2513 2608 -4 1628 215 0 3 chrX 113322227 113322539 -49277391 - AluJo SINE Alu -1 311 1 1537 157 118 73 chrX 113322732 113323256 -49276674 - pTR5 LTR ERV1 -516 1922 57 1738 153 85 22 chrX 113323256 113323825 -49276105 - pTR5 LTR ERV1 -497 1941 57 1057 75 0 160 chrX 113323825 113324038 -49275892 - LTR12 LTR ERV1 -483 231 53 238 231 0 0 chrX 113324038 113324090 -49275840 - LTR30 LTR ERV1 -670 52 1 12307 135 32 8 chrX 113324090 113326196 -49273734 - Tigger1 DNA MER2_type -259 2159 3 806 162 16 11 chrX 113326196 113326381 -49273549 + L1MA8 LINE L1 6101 6286 -5 1675 196 7 0 chrX 113326392 113326678 -49273252 + AluJo SINE Alu 1 288 -24 646 279 103 27 chrX 113327664 113327965 -49271965 + L3b LINE CR1 1174 1497 -86 1834 157 30 40 chrX 113328617 113328987 -49270943 - MER47A DNA MER2_type 0 366 1 290 352 87 46 chrX 113329914 113330110 -49269820 - L2 LINE L2 -74 3198 2995 236 324 0 0 chrX 113330116 113330184 -49269746 + L2 LINE L2 2594 2661 -653 934 334 98 32 chrX 113330193 113330845 -49269085 - L2 LINE L2 -359 2955 2261 2849 27 6 0 chrX 113331517 113331852 -49268078 - L1PA4 LINE L1 -1 6154 5818 1203 222 9 0 chrX 113332402 113332632 -49267298 - MIR SINE MIR -24 238 7 709 180 0 0 chrX 113332997 113333119 -49266811 - FLAM_A SINE Alu -11 122 1 2764 272 72 12 chrX 113333654 113334715 -49265215 + L2 LINE L2 2178 3312 -1 2357 99 0 13 chrX 113335076 113335389 -49264541 + AluSx SINE Alu 1 309 -3 489 338 32 0 chrX 113336165 113336322 -49263608 + MIR3 SINE MIR 44 205 -3 306 250 22 22 chrX 113336398 113336490 -49263440 + L1MC5 LINE L1 7832 7923 -38 704 266 46 32 chrX 113336915 113337133 -49262797 + MIR SINE MIR 14 234 -28 307 329 99 50 chrX 113337253 113337414 -49262516 - L2 LINE L2 -7 3265 3097 782 279 61 45 chrX 113337700 113338077 -49261853 - MLT1J LTR MaLR -124 387 5 1448 214 66 49 chrX 113338180 113338744 -49261186 - LTR24B LTR ERV1 -7 569 1 1402 218 186 62 chrX 113338806 113339466 -49260464 - MER21B LTR ERV1 -123 808 11 180 0 0 0 chrX 113340437 113340457 -49259473 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 221 319 14 0 chrX 113342670 113342742 -49257188 - MIR3 SINE MIR -15 193 121 * 240 333 12 24 chrX 113342739 113342823 -49257107 + L3 LINE CR1 1472 1554 -23 403 284 0 10 chrX 113342832 113342934 -49256996 - MIR SINE MIR -80 128 28 596 196 0 18 chrX 113344176 113344288 -49255642 - FLAM_A SINE Alu -21 121 12 191 307 13 27 chrX 113344326 113344401 -49255529 - MIR3 SINE MIR -131 77 4 183 80 0 0 chrX 113344505 113344530 -49255400 + (TTA)n Simple_repeat Simple_repeat 1 25 0 411 313 23 16 chrX 113344530 113344658 -49255272 + MIR SINE MIR 16 144 -64 324 0 0 0 chrX 113344825 113344861 -49255069 + (T)n Simple_repeat Simple_repeat 1 36 0 382 265 95 20 chrX 113345004 113345151 -49254779 - MIR SINE MIR -4 258 101 3111 173 59 56 chrX 113345159 113345450 -49254480 - LTR1 LTR ERV1 -8 777 489 1250 52 0 0 chrX 113345450 113345605 -49254325 - L1PA4 LINE L1 -8 6147 5993 3111 173 59 56 chrX 113345605 113346087 -49253843 - LTR1 LTR ERV1 -296 489 1 419 320 20 7 chrX 113346497 113346647 -49253283 + MIR SINE MIR 2 153 -109 547 217 33 8 chrX 113346787 113346907 -49253023 - L2 LINE L2 -1 3312 3190 384 336 39 74 chrX 113346998 113347227 -49252703 - L2 LINE L2 -66 3206 2986 254 322 186 66 chrX 113347267 113347982 -49251948 + L2 LINE L2 1285 2085 -1229 284 371 34 17 chrX 113348062 113348240 -49251690 + L2 LINE L2 2494 2674 -640 1448 145 118 15 chrX 113348759 113349091 -49250839 - MER47A DNA MER2_type 0 366 1 682 313 23 8 chrX 113350009 113350265 -49249665 + MIR SINE MIR 1 260 -2 470 311 102 35 chrX 113350269 113350584 -49249346 - L2 LINE L2 -542 2772 2437 2161 108 14 0 chrX 113350641 113350928 -49249002 + AluSx SINE Alu 1 291 -21 1504 348 109 19 chrX 113351206 113351435 -49248495 - L2 LINE L2 -798 2516 2309 2274 157 46 14 chrX 113351435 113351848 -49248082 - MSTB LTR MaLR 0 426 1 1504 348 109 19 chrX 113351848 113352962 -49246968 - L2 LINE L2 -1005 2309 1053 579 188 0 0 chrX 113353319 113353420 -49246510 - U6 snRNA snRNA -6 101 1 1618 142 112 0 chrX 113353922 113354190 -49245740 - AluSx SINE Alu -14 298 1 2134 113 24 0 chrX 113354519 113354812 -49245118 - AluSx SINE Alu -12 300 1 867 258 64 50 chrX 113354972 113355332 -49244598 - MLT1J LTR MaLR -146 365 1 184 149 43 0 chrX 113356066 113356113 -49243817 + GA-rich Low_complexity Low_complexity 2 50 0 2764 10 0 0 chrX 113356396 113356699 -49243231 - AluYa5 SINE Alu -8 303 1 2100 112 0 7 chrX 113356976 113357262 -49242668 - AluSg SINE Alu -26 284 1 456 80 0 91 chrX 113357583 113357658 -49242272 + MER21B-int LTR ERV1 4057 4125 -66 3837 127 10 5 chrX 113357658 113358256 -49241674 - MER7C DNA MER2_type -1 601 1 456 80 0 91 chrX 113358256 113358268 -49241662 + MER21B-int LTR ERV1 4125 4136 -55 2607 190 91 32 chrX 113358360 113359132 -49240798 + MER21B LTR ERV1 1 911 -20 2026 249 256 13 chrX 113359145 113359897 -49240033 + L2 LINE L2 1784 2352 -961 4473 139 67 6 chrX 113359897 113360676 -49239254 - LTR1B LTR ERV1 0 826 1 2026 249 256 13 chrX 113360676 113361128 -49238802 + L2 LINE L2 2352 3283 -30 921 117 0 22 chrX 113361897 113362034 -49237896 + AluJo SINE Alu 1 134 -178 428 332 151 0 chrX 113362777 113362976 -49236954 + MIR SINE MIR 20 248 -14 372 43 0 0 chrX 113362986 113363032 -49236898 + (TTA)n Simple_repeat Simple_repeat 2 47 0 241 300 0 0 chrX 113363614 113363674 -49236256 + MIR SINE MIR 81 140 -68 305 257 48 29 chrX 113363983 113364088 -49235842 - MIR SINE MIR -42 220 114 549 284 8 117 chrX 113364724 113364851 -49235079 + MIR SINE MIR 7 92 -170 2295 105 11 3 chrX 113364851 113365212 -49234718 + L1MA6 LINE L1 5937 6300 0 549 284 8 117 chrX 113365212 113365348 -49234582 + MIR SINE MIR 92 241 -21 225 239 31 138 chrX 113365345 113365475 -49234455 + L2 LINE L2 3190 3305 -8 * 471 278 16 8 chrX 113365642 113365768 -49234162 + MIR3 SINE MIR 36 162 -46 478 311 88 10 chrX 113366702 113366895 -49233035 + MIR3 SINE MIR 1 208 0 216 328 26 52 chrX 113367271 113367387 -49232543 - L2 LINE L2 -576 2738 2626 414 207 0 0 chrX 113367431 113367513 -49232417 - L2 LINE L2 -839 2475 2394 22 0 0 0 chrX 113367546 113367568 -49232362 + AT_rich Low_complexity Low_complexity 1 22 0 2087 101 14 0 chrX 113367748 113368063 -49231867 - AluSx SINE Alu 0 319 1 180 111 0 0 chrX 113368081 113368108 -49231822 + (T)n Simple_repeat Simple_repeat 1 27 0 28 29 0 0 chrX 113369076 113369111 -49230819 + AT_rich Low_complexity Low_complexity 1 35 0 221 86 75 43 chrX 113369113 113369206 -49230724 + (TTATA)n Simple_repeat Simple_repeat 1 96 0 27 29 0 0 chrX 113369206 113369240 -49230690 + AT_rich Low_complexity Low_complexity 1 34 0 2038 151 5 5 chrX 113369583 113369953 -49229977 - L1MB7 LINE L1 -74 6110 5741 240 86 0 0 chrX 113370372 113370407 -49229523 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 268 343 69 20 chrX 113370743 113370845 -49229085 - L2 LINE L2 -8 3264 3158 360 311 21 84 chrX 113372570 113372808 -49227122 + L2 LINE L2 2556 2778 -536 186 71 0 0 chrX 113373054 113373082 -49226848 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1970 123 0 0 chrX 113373088 113373364 -49226566 - AluSx SINE Alu -36 276 1 387 300 92 8 chrX 113373745 113373865 -49226065 + MIR3 SINE MIR 44 173 -35 378 227 127 9 chrX 113373876 113373986 -49225944 - L2 LINE L2 -1 3312 3190 546 248 0 47 chrX 113374787 113374916 -49225014 + L2 LINE L2 3185 3307 -6 240 212 0 0 chrX 113375267 113375333 -49224597 + GA-rich Low_complexity Low_complexity 1 66 0 716 235 74 41 chrX 113375600 113375843 -49224087 + MIR SINE MIR 12 262 0 211 231 0 0 chrX 113376500 113376539 -49223391 - L3 LINE CR1 -13 1564 1526 182 231 123 123 chrX 113376885 113377015 -49222915 - MIR3 SINE MIR -49 159 30 519 231 121 66 chrX 113378695 113378877 -49221053 - L2 LINE L2 -5 3308 3117 2051 149 0 0 chrX 113379151 113379446 -49220484 - AluSx SINE Alu -17 295 1 194 287 74 37 chrX 113381001 113381109 -49218821 - L2 LINE L2 -47 3225 3114 928 168 0 0 chrX 113381234 113381377 -49218553 - AluJb SINE Alu -25 287 145 597 202 0 0 chrX 113381488 113381592 -49218338 + AluJb SINE Alu 168 271 -41 285 130 0 0 chrX 113381692 113381738 -49218192 + (A)n Simple_repeat Simple_repeat 1 46 0 665 131 9 9 chrX 113381757 113381864 -49218066 - FLAM_C SINE Alu -36 107 1 2328 91 0 7 chrX 113382492 113382789 -49217141 + AluSq SINE Alu 1 295 -18 312 221 310 0 chrX 113383233 113383346 -49216584 + MER5A DNA MER1_type 42 189 0 1527 149 14 7 chrX 113384235 113384516 -49215414 + MER50 LTR ERV1 1 283 -451 1591 152 4 7 chrX 113384545 113384815 -49215115 + MER50 LTR ERV1 443 711 -23 247 273 45 0 chrX 113385087 113385175 -49214755 + L1PA15-16 LINE L1 1473 1564 -5285 1330 114 132 29 chrX 113385278 113385550 -49214380 + MER41-int LTR ERV1 3830 4129 -1817 * 1568 132 0 23 chrX 113385547 113385813 -49214117 + MER41-int LTR ERV1 4239 4498 -1448 1927 121 3 0 chrX 113385813 113386110 -49213820 - MER41B LTR ERV1 -337 298 1 5502 89 41 30 chrX 113386112 113386840 -49213090 - MER41B-int LTR ERV1 -3 5943 5202 1964 159 3 0 chrX 113386840 113387130 -49212800 - AluSq SINE Alu -22 291 1 5502 89 41 30 chrX 113387130 113387273 -49212657 - MER41B-int LTR ERV1 -744 5202 5062 473 362 79 51 chrX 113387415 113387945 -49211985 - L1M2 LINE L1 -6295 554 10 3060 115 11 11 chrX 113388248 113388700 -49211230 + MLT2A2 LTR ERVL 2 453 0 14480 88 10 20 chrX 113388700 113390823 -49209107 + HERVL-A2 LTR ERVL 1 2103 -3551 7702 85 4 0 chrX 113390819 113391879 -49208051 + HERVL-A1 LTR ERVL 4578 5641 -13 * 2304 132 51 0 chrX 113391895 113392267 -49207663 + MLT2A1 LTR ERVL 14 404 -40 259 172 0 21 chrX 113392270 113392363 -49207567 + (TA)n Simple_repeat Simple_repeat 1 91 0 288 103 17 17 chrX 113392376 113392434 -49207496 + MLT2A1 LTR ERVL 387 444 0 4088 232 39 30 chrX 113392446 113392615 -49207315 - L1MD2 LINE L1 -22 6337 6171 2378 169 22 12 chrX 113392615 113393028 -49206902 + MER47B DNA MER2_type 1 417 -1 4088 232 39 30 chrX 113393028 113394236 -49205694 - L1MD2 LINE L1 -188 6171 4964 197 364 110 0 chrX 113394597 113394715 -49205215 - MIR SINE MIR -129 133 3 1301 200 19 4 chrX 113394974 113395244 -49204686 - MLT1A1 LTR MaLR 0 365 92 1092 144 28 0 chrX 113395508 113395689 -49204241 - L1PA11 LINE L1 0 6174 5989 5202 146 40 14 chrX 113395711 113397157 -49202773 - L1PB2 LINE L1 0 6151 4669 239 121 0 69 chrX 113397529 113397587 -49202343 + (TTTTTA)n Simple_repeat Simple_repeat 1 54 0 304 163 109 0 chrX 113397587 113397679 -49202251 + MER103 DNA DNA 55 156 -10 266 278 102 0 chrX 113399067 113399175 -49200755 + MIR SINE MIR 138 256 -6 3017 184 34 14 chrX 113399416 113400036 -49199894 + MER73 LTR ERVL 13 644 0 326 250 71 0 chrX 113400129 113400241 -49199689 - MIR SINE MIR -10 252 133 240 304 148 9 chrX 113400630 113400745 -49199185 - MIR SINE MIR -112 150 20 1193 134 92 54 chrX 113400752 113401013 -49198917 - THE1C LTR MaLR -50 325 55 783 56 0 19 chrX 113401015 113401122 -49198808 - L1PA8 LINE L1 -4 6168 6064 1386 116 28 0 chrX 113401532 113401747 -49198183 - L1PA16 LINE L1 -9 6157 5937 637 236 330 6 chrX 113403032 113403384 -49196546 + LTR50 LTR ERVL 4 469 -326 237 309 41 0 chrX 113403392 113403489 -49196441 + LTR33A LTR ERVL 401 501 -22 2349 95 0 0 chrX 113403649 113403944 -49195986 + AluSx SINE Alu 1 295 -17 514 278 8 0 chrX 113404410 113404543 -49195387 - MER94 DNA DNA 0 134 1 2134 117 3 0 chrX 113405108 113405440 -49194490 + AluSp SINE Alu 1 333 0 2578 115 3 3 chrX 113405585 113405949 -49193981 + THE1B LTR MaLR 1 364 0 545 289 52 39 chrX 113406051 113406283 -49193647 + MIR SINE MIR 13 247 -15 461 229 171 7 chrX 113406284 113406424 -49193506 + MIR SINE MIR 79 241 -21 2564 71 0 0 chrX 113406811 113407122 -49192808 - AluY SINE Alu 0 311 1 305 323 31 56 chrX 113407481 113407676 -49192254 + L2 LINE L2 2686 2875 -439 263 324 9 36 chrX 113407824 113407935 -49191995 + MIR SINE MIR 13 120 -142 211 182 0 23 chrX 113408234 113408278 -49191652 + MIR3 SINE MIR 159 201 -7 7770 18 0 0 chrX 113408346 113409329 -49190601 - L1PA3 LINE L1 0 6155 5173 453 311 0 85 chrX 113409720 113409897 -49190033 + L3 LINE CR1 1403 1564 -13 192 296 0 19 chrX 113410388 113410442 -49189488 - L2 LINE L2 -92 3221 3169 1444 267 64 47 chrX 113410515 113411406 -49188524 - L1M4 LINE L1 -1028 5616 4711 390 318 78 5 chrX 113411412 113411604 -49188326 - MLT1J2 LTR MaLR 0 450 245 256 322 22 0 chrX 113411649 113411739 -49188191 - MLT1J1 LTR MaLR -284 162 71 474 304 26 19 chrX 113411816 113412125 -49187805 - L1M4 LINE L1 -1955 4689 4379 396 319 91 16 chrX 113412140 113412526 -49187404 - L1M4 LINE L1 -2390 4254 3840 4454 191 37 31 chrX 113412603 113414068 -49185862 - L1MB7 LINE L1 -13 6171 4698 4074 280 65 23 chrX 113414063 113415383 -49184547 - L1M4 LINE L1 -5125 1417 42 * 2650 260 47 21 chrX 113415610 113417360 -49182570 - L1ME1 LINE L1 -5 6555 4766 984 160 0 7 chrX 113417367 113417517 -49182413 - AluJb SINE Alu -17 295 147 1766 122 0 66 chrX 113417534 113417854 -49182076 - AluY SINE Alu -12 299 1 669 131 0 62 chrX 113417938 113418068 -49181862 + LTR53 LTR ERVL 2 123 -396 419 256 94 68 chrX 113418083 113418497 -49181433 - L1ME1 LINE L1 -4590 1950 1526 184 398 47 31 chrX 113418577 113418705 -49181225 - L2 LINE L2 -576 2738 2609 325 392 118 24 chrX 113418731 113419511 -49180419 + L2 LINE L2 2088 2940 -374 1044 111 0 47 chrX 113419587 113419759 -49180171 - AluSg/x SINE Alu 0 310 147 309 278 106 40 chrX 113420038 113420236 -49179694 - MARNA DNA Mariner -301 285 75 355 311 62 11 chrX 113420360 113420537 -49179393 - MIR SINE MIR -12 250 65 207 0 0 0 chrX 113421268 113421291 -49178639 + (TG)n Simple_repeat Simple_repeat 1 23 0 617 211 0 0 chrX 113421291 113421405 -49178525 - FLAM_A SINE Alu -19 114 1 516 137 21 11 chrX 113421469 113421564 -49178366 + MER4A LTR ERV1 6 101 -563 * 1685 147 9 22 chrX 113421563 113421911 -49178019 + MER4A LTR ERV1 263 664 0 612 327 5 5 chrX 113422172 113422386 -49177544 + MIR SINE MIR 49 262 0 206 333 23 23 chrX 113422507 113422594 -49177336 + MER5A DNA MER1_type 1 87 -102 377 325 7 53 chrX 113422937 113423088 -49176842 - MER5A DNA MER1_type -30 159 16 765 294 32 0 chrX 113423521 113423739 -49176191 + MIR SINE MIR 7 231 -31 258 32 0 0 chrX 113424475 113424506 -49175424 + (A)n Simple_repeat Simple_repeat 1 31 0 2207 62 0 55 chrX 113424516 113424823 -49175107 + AluY SINE Alu 1 290 -21 454 364 0 0 chrX 113425976 113426130 -49173800 - L2 LINE L2 -2 3270 3117 710 280 86 0 chrX 113426168 113426400 -49173530 + MIR SINE MIR 1 252 -10 290 273 119 35 chrX 113426577 113426720 -49173210 - L2 LINE L2 -972 2342 2188 23 0 0 0 chrX 113427602 113427625 -49172305 + AT_rich Low_complexity Low_complexity 1 23 0 1477 216 14 14 chrX 113427630 113427908 -49172022 - AluJo SINE Alu -34 278 1 2136 121 0 25 chrX 113428136 113428451 -49171479 + AluSg1 SINE Alu 1 307 -2 1733 176 3 10 chrX 113429207 113429502 -49170428 - AluJb SINE Alu -19 293 1 1897 246 53 17 chrX 113429502 113430275 -49169655 - L1MEc LINE L1 -3269 2946 2168 2548 204 70 22 chrX 113430311 113430644 -49169286 + L1M4 LINE L1 817 1133 -5409 2125 70 3 18 chrX 113430644 113430930 -49169000 - AluY SINE Alu -2 309 28 2548 204 70 22 chrX 113430930 113431163 -49168767 + L1M4 LINE L1 1133 1353 -5189 3749 155 9 11 chrX 113431163 113431807 -49168123 - MER73 LTR ERVL -1 643 1 2548 204 70 22 chrX 113431807 113432012 -49167918 + L1M4 LINE L1 1353 1626 -4916 * 6041 199 27 2 chrX 113432007 113433815 -49166115 - L1M1 LINE L1 -5023 2542 13 206 154 0 26 chrX 113434595 113434634 -49165296 + CT-rich Low_complexity Low_complexity 3 40 0 855 272 82 50 chrX 113434921 113435384 -49164546 + LTR33A LTR ERVL 32 509 -14 351 285 6 15 chrX 113435556 113435738 -49164192 + L1ME LINE L1 5712 5824 -297 234 171 0 68 chrX 113435762 113435850 -49164080 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 686 275 164 9 chrX 113435853 113436241 -49163689 + L2 LINE L2 2343 2836 -478 259 129 16 65 chrX 113436245 113436307 -49163623 + L1ME2 LINE L1 5866 5924 -240 1823 220 81 6 chrX 113436330 113436914 -49163016 - L1ME1 LINE L1 -321 5845 5213 548 199 0 38 chrX 113437103 113437234 -49162696 + MER31A LTR ERV1 359 484 -1 2033 136 51 28 chrX 113437262 113437616 -49162314 + THE1B LTR MaLR 1 362 -2 11666 91 10 3 chrX 113437618 113439186 -49160744 + THE1B-int LTR MaLR 1 1580 0 1111 139 74 25 chrX 113439186 113439388 -49160542 + THE1B LTR MaLR 1 212 -152 3700 84 41 9 chrX 113439501 113440038 -49159892 - MER41A LTR ERV1 0 554 1 1684 207 84 22 chrX 113441045 113441560 -49158370 + MER39 LTR ERV1 5 707 0 22364 104 20 38 chrX 113442023 113446861 -49153069 + L1PA7 LINE L1 12 4594 -1560 2375 91 3 0 chrX 113446861 113447170 -49152760 + AluY SINE Alu 1 310 -1 22364 104 20 38 chrX 113447170 113448705 -49151225 + L1PA7 LINE L1 4594 6154 0 674 266 60 32 chrX 113448868 113449270 -49150660 + L1MDa LINE L1 1303 1715 -4825 306 336 0 9 chrX 113449275 113449388 -49150542 + L1MDa LINE L1 1989 2100 -4621 838 151 36 36 chrX 113449432 113449598 -49150332 - MLT1D LTR MaLR -2 503 338 1614 218 119 51 chrX 113449600 113449641 -49150289 - MLT2B1 LTR ERVL 0 520 483 285 29 0 0 chrX 113449641 113449675 -49150255 + (CA)n Simple_repeat Simple_repeat 1 34 0 1614 218 119 51 chrX 113449675 113450120 -49149810 - MLT2B1 LTR ERVL -37 483 1 1189 136 0 20 chrX 113450120 113450318 -49149612 - ERVL-B1 LTR ERVL -7 5757 5564 1924 161 130 3 chrX 113450319 113450697 -49149233 + MSTA LTR MaLR 1 426 -2 2448 164 9 0 chrX 113450699 113451137 -49148793 + MSTA-int LTR MaLR 1 442 -1209 6508 182 21 2 chrX 113452647 113453827 -49146103 + MSTA-int LTR MaLR 439 1641 -10 313 238 0 12 chrX 113454104 113454184 -49145746 + MSTA-int LTR MaLR 1492 1570 -10 1902 143 165 0 chrX 113454198 113454562 -49145368 + MSTA LTR MaLR 5 428 0 4236 139 33 71 chrX 113454562 113455022 -49144908 - ERVL-B1 LTR ERVL -197 5567 5158 1803 184 75 21 chrX 113455022 113455398 -49144532 + MSTD LTR MaLR 1 396 0 4236 139 33 71 chrX 113455398 113455867 -49144063 - ERVL-B1 LTR ERVL -606 5158 4673 1761 104 21 131 chrX 113456503 113456619 -49143311 - LTR62 LTR ERVK -3 716 589 1963 153 0 31 chrX 113456619 113456939 -49142991 - AluSx SINE Alu 0 312 3 1761 104 21 131 chrX 113456939 113457205 -49142725 - LTR62 LTR ERVK -130 589 376 2880 140 66 38 chrX 113457231 113457818 -49142112 - LTR29 LTR ERV1 0 622 19 3641 105 18 25 chrX 113458030 113458119 -49141811 + LTR49 LTR ERV1 1 89 -506 1843 127 59 59 chrX 113458119 113458490 -49141440 - THE1C LTR MaLR -2 373 3 3641 105 18 25 chrX 113458490 113458999 -49140931 + LTR49 LTR ERV1 89 595 0 521 227 31 31 chrX 113459415 113459543 -49140387 - L2 LINE L2 0 3313 3186 229 159 68 45 chrX 113459609 113459697 -49140233 - L2 LINE L2 -129 3184 3095 4031 131 32 17 chrX 113459705 113460399 -49139531 - MER50 LTR ERV1 -30 704 1 1425 282 59 23 chrX 113460779 113461520 -49138410 + MER4D LTR ERV1 1 898 -5 1158 200 49 42 chrX 113461655 113462080 -49137850 - MER69 DNA AcHobo 0 2526 2099 474 261 20 0 chrX 113462085 113462238 -49137692 - L1M4 LINE L1 -1112 5034 4879 825 277 82 60 chrX 113462417 113462965 -49136965 - L1MEd LINE L1 -4905 1214 655 1039 298 50 52 chrX 113463568 113463991 -49135939 + L2 LINE L2 2875 3296 -17 21 0 0 0 chrX 113463995 113464016 -49135914 + AT_rich Low_complexity Low_complexity 1 21 0 3159 155 9 55 chrX 113464026 113464228 -49135702 - MER6A DNA MER2_type -261 604 394 1847 170 7 0 chrX 113464228 113464516 -49135414 + AluJb SINE Alu 1 290 -22 3159 155 9 55 chrX 113464516 113464861 -49135069 - MER6A DNA MER2_type -471 394 87 2036 148 50 6 chrX 113464861 113465220 -49134710 + THE1C LTR MaLR 1 375 0 3159 155 9 55 chrX 113465220 113465304 -49134626 - MER6A DNA MER2_type -778 87 1 2692 133 2 38 chrX 113466468 113466912 -49133018 - MSTA LTR MaLR 0 428 1 23 68 0 0 chrX 113468555 113468599 -49131331 + AT_rich Low_complexity Low_complexity 1 44 0 1381 99 23 5 chrX 113468821 113469042 -49130888 + THE1C LTR MaLR 91 315 -60 542 118 0 0 chrX 113469295 113469388 -49130542 + MLT2A2 LTR ERVL 1 93 -360 1805 188 32 30 chrX 113469391 113469949 -49129981 + MLT2A2 LTR ERVL 1 554 0 519 201 32 39 chrX 113470000 113470154 -49129776 - L1MB8 LINE L1 -49 6129 5977 2647 155 180 15 chrX 113470418 113470793 -49129137 - MER39 LTR ERV1 0 707 395 1838 191 9 78 chrX 113470793 113471218 -49128712 + MSTD LTR MaLR 1 396 0 2647 155 180 15 chrX 113471218 113471449 -49128481 - MER39 LTR ERV1 -312 395 1 295 320 20 0 chrX 113471847 113471997 -49127933 + MLT1I LTR MaLR 244 396 -13 2553 223 79 33 chrX 113472185 113472942 -49126988 + MER21B LTR ERV1 12 803 -60 586 260 109 53 chrX 113473006 113473197 -49126733 + LTR16A LTR ERVL 7 219 -231 1894 136 54 41 chrX 113473197 113473565 -49126365 + THE1C LTR MaLR 1 373 -2 586 260 109 53 chrX 113473565 113473638 -49126292 + LTR16A LTR ERVL 219 286 -164 520 252 26 13 chrX 113473849 113474000 -49125930 + LTR16A LTR ERVL 292 444 -6 2042 149 9 32 chrX 113474127 113474470 -49125460 + MER1B DNA MER1_type 3 337 0 1811 147 27 10 chrX 113475209 113475502 -49124428 - AluJo SINE Alu -10 302 5 282 295 41 66 chrX 113475519 113475641 -49124289 - L2 LINE L2 -16 3256 3138 25 0 0 0 chrX 113475988 113476013 -49123917 + AT_rich Low_complexity Low_complexity 1 25 0 285 182 0 0 chrX 113478323 113478378 -49121552 + GA-rich Low_complexity Low_complexity 3 57 0 356 213 106 0 chrX 113479736 113479830 -49120100 + L2 LINE L2 3210 3313 0 1190 244 31 18 chrX 113481344 113481794 -49118136 + L1MC5 LINE L1 7452 7907 -54 21 36 0 0 chrX 113481814 113481842 -49118088 + AT_rich Low_complexity Low_complexity 1 28 0 272 218 40 153 chrX 113482576 113482700 -49117230 - MIR SINE MIR -2 260 151 245 275 29 14 chrX 113482916 113482985 -49116945 + Charlie1 DNA MER1_type 1 70 -2691 563 204 41 14 chrX 113482986 113483133 -49116797 + Charlie1 DNA MER1_type 2346 2496 -265 1019 93 0 0 chrX 113483134 113483263 -49116667 + AluSq/x SINE Alu 1 129 -183 549 215 8 0 chrX 113484295 113484425 -49115505 + L1MDa LINE L1 1871 2001 -4539 * 3082 194 18 7 chrX 113484421 113485034 -49114896 + L1PA12 LINE L1 3 622 -6959 6384 98 14 0 chrX 113485035 113486855 -49113075 + L1PA11 LINE L1 4327 6174 0 1919 265 46 35 chrX 113486858 113488246 -49111684 + L1MDa LINE L1 2034 3393 -3147 1372 123 59 4 chrX 113488247 113488500 -49111430 - AluSx SINE Alu -15 297 31 2594 241 82 39 chrX 113488610 113490028 -49109902 - L1ME2 LINE L1 -34 6130 4617 2221 90 3 7 chrX 113490028 113490327 -49109603 + AluSx SINE Alu 1 298 -14 2594 241 82 39 chrX 113490327 113490840 -49109090 - L1ME2 LINE L1 -1547 4617 4128 1297 286 26 45 chrX 113490857 113491508 -49108422 + L1MDa LINE L1 3833 4471 -2069 488 268 71 75 chrX 113491623 113492119 -49107811 + L1ME LINE L1 672 1165 -5207 917 307 64 51 chrX 113492147 113493220 -49106710 + L1ME LINE L1 1121 2330 -4233 4342 239 55 25 chrX 113493230 113494410 -49105520 + L1M4 LINE L1 8 1223 -5319 256 170 0 0 chrX 113494406 113494459 -49105471 + L1M4 LINE L1 5776 5828 -346 * 1937 308 44 16 chrX 113494459 113495076 -49104854 + L1MB8 LINE L1 4 637 -6222 865 269 74 51 chrX 113495089 113495259 -49104671 + L1MB8 LINE L1 1934 2099 -4860 207 0 0 0 chrX 113495259 113495282 -49104648 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1949 97 22 0 chrX 113495286 113495554 -49104376 - AluSg SINE Alu -36 274 1 865 269 74 51 chrX 113495554 113495850 -49104080 + L1MB8 LINE L1 2101 2416 -4543 2311 154 51 12 chrX 113495913 113496341 -49103589 + MER65A LTR ERV1 1 445 0 21 89 0 0 chrX 113496537 113496593 -49103337 + AT_rich Low_complexity Low_complexity 1 56 0 1746 245 59 20 chrX 113496603 113497481 -49102449 + L1MB8 LINE L1 2628 3506 -3451 495 190 0 16 chrX 113497483 113497604 -49102326 - Zaphod DNA AcHobo -327 3704 3586 264 201 47 89 chrX 113497609 113497823 -49102107 - Zaphod DNA AcHobo -3093 938 734 1280 145 192 0 chrX 113497823 113498057 -49101873 - Tigger3(Golem) DNA MER2_type 0 3038 2760 25 31 0 0 chrX 113498068 113498100 -49101830 + AT_rich Low_complexity Low_complexity 1 32 0 1148 106 6 11 chrX 113498111 113498291 -49101639 - L1PA13 LINE L1 -14 6149 5971 818 256 16 4 chrX 113498291 113498537 -49101393 + L1MB8 LINE L1 3494 3742 -3215 * 2240 122 6 0 chrX 113498532 113498926 -49101004 - L1M2 LINE L1 -692 5599 5204 4000 145 22 8 chrX 113498926 113499644 -49100286 + L1MA8 LINE L1 5564 6291 0 7368 226 53 47 chrX 113499650 113502891 -49097039 + L1MB8 LINE L1 3731 6988 -1 1417 213 47 18 chrX 113502903 113503246 -49096684 + L1MB7 LINE L1 5814 6166 -18 1338 258 36 50 chrX 113503348 113503381 -49096549 + L1M4 LINE L1 2143 2175 -3971 2909 102 58 4 chrX 113503381 113503832 -49096098 + L1PB1 LINE L1 5676 6150 -1 1338 258 36 50 chrX 113503832 113504497 -49095433 + L1M4 LINE L1 2175 2831 -3315 653 283 38 0 chrX 113504518 113504808 -49095122 + L1M4 LINE L1 2689 2989 -3157 701 262 45 20 chrX 113504815 113505059 -49094871 + L1MD3 LINE L1 7727 7976 -19 * 12203 196 26 32 chrX 113505042 113506432 -49093498 + L1MA8 LINE L1 2349 3746 -2400 180 0 0 0 chrX 113506432 113506452 -49093478 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 12203 196 26 32 chrX 113506452 113507984 -49091946 + L1MA8 LINE L1 3746 5253 -893 1902 187 26 6 chrX 113507985 113508332 -49091598 + MLT1A1 LTR MaLR 1 354 -11 2665 139 35 31 chrX 113508389 113508486 -49091444 + L1MA8 LINE L1 5346 5441 -850 2163 120 0 3 chrX 113508486 113508785 -49091145 + AluSx SINE Alu 4 301 -11 2665 139 35 31 chrX 113508785 113509133 -49090797 + L1MA8 LINE L1 5441 5796 -495 189 0 0 0 chrX 113509133 113509154 -49090776 + (CA)n Simple_repeat Simple_repeat 2 22 0 2665 139 35 31 chrX 113509154 113509189 -49090741 + L1MA8 LINE L1 5796 5829 -462 3369 235 72 19 chrX 113509330 113510108 -49089822 + L1ME1 LINE L1 2459 3322 -2824 1028 92 0 37 chrX 113510108 113510272 -49089658 + L1PA14 LINE L1 6004 6161 0 3369 235 72 19 chrX 113510272 113510676 -49089254 + L1ME1 LINE L1 3322 3703 -2443 8604 195 29 2 chrX 113510717 113511297 -49088633 + L1 LINE L1 2511 3074 -3072 180 0 0 0 chrX 113511297 113511317 -49088613 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 8604 195 29 2 chrX 113511317 113511895 -49088035 + L1 LINE L1 3074 3635 -2511 1910 147 21 0 chrX 113511895 113512180 -49087750 + AluSq SINE Alu 1 291 -22 8604 195 29 2 chrX 113512180 113512858 -49087072 + L1 LINE L1 3635 4398 -1748 4709 44 0 0 chrX 113512862 113513432 -49086498 + L1PA6 LINE L1 5582 6151 -3 431 329 43 40 chrX 113513432 113513782 -49086148 + L1ME LINE L1 5474 5824 -297 217 235 39 0 chrX 113513921 113513972 -49085958 + GA-rich Low_complexity Low_complexity 4 56 0 24 32 0 0 chrX 113513972 113514003 -49085927 + AT_rich Low_complexity Low_complexity 1 31 0 7185 121 21 5 chrX 113514016 113515899 -49084031 + L1MA1 LINE L1 4389 6301 -1 2355 230 57 42 chrX 113515922 113516160 -49083770 + L1ME1 LINE L1 5003 5236 -930 2163 122 0 3 chrX 113516160 113516463 -49083467 + AluSx SINE Alu 1 302 -10 2355 230 57 42 chrX 113516463 113517262 -49082668 + L1ME1 LINE L1 5236 6060 -106 3272 229 36 69 chrX 113517265 113518946 -49080984 + L1MA5A LINE L1 2758 4384 -3181 2785 196 120 18 chrX 113518943 113519651 -49080279 + L1MA5A LINE L1 6935 7714 -2 * 3886 213 49 9 chrX 113519676 113521357 -49078573 + L1MA9 LINE L1 4533 6279 -33 266 239 45 57 chrX 113521366 113521454 -49078476 + L1ME1 LINE L1 5921 6007 -159 4674 258 89 53 chrX 113521562 113524243 -49075687 + L1MC/D LINE L1 2687 5464 -743 353 253 51 0 chrX 113524258 113524337 -49075593 + MER58 DNA MER1_type 1 83 -132 1823 251 7 2 chrX 113524657 113525067 -49074863 + Charlie1a DNA MER1_type 6 417 -1038 5258 18 2 0 chrX 113525067 113525688 -49074242 - L1P LINE L1 -1365 4781 4160 351 0 0 0 chrX 113526003 113526042 -49073888 + (A)n Simple_repeat Simple_repeat 1 39 0 2431 208 16 54 chrX 113526042 113526790 -49073140 + Charlie1a DNA MER1_type 404 1196 -259 1851 197 21 7 chrX 113526790 113527238 -49072692 - L1M LINE L1 -743 5403 4966 854 150 7 0 chrX 113527238 113527375 -49072555 + L1PB4 LINE L1 6016 6156 0 1019 190 38 23 chrX 113527377 113527640 -49072290 + Charlie1a DNA MER1_type 1183 1449 -6 258 338 50 18 chrX 113527866 113528310 -49071620 + L1MC4a LINE L1 4562 5019 -1127 1886 243 146 112 chrX 113528522 113530389 -49069541 + L1MC4a LINE L1 5273 7202 -606 285 249 135 32 chrX 113530369 113530554 -49069376 - L1MEd LINE L1 -3275 2854 2651 * 482 271 81 62 chrX 113530567 113531036 -49068894 - L1MEd LINE L1 -3559 2570 2093 885 221 0 11 chrX 113531100 113531281 -49068649 - AluJo SINE Alu -12 300 122 1844 160 7 0 chrX 113531363 113531657 -49068273 - AluJb SINE Alu -16 296 1 314 294 48 8 chrX 113531781 113531907 -49068023 - L1MEd LINE L1 -5280 839 709 724 267 7 44 chrX 113732643 113732913 -48867017 + L1ME1 LINE L1 5905 6164 -2 25 31 0 0 chrX 113732979 113733011 -48866919 + AT_rich Low_complexity Low_complexity 1 32 0 2235 115 0 3 chrX 113733063 113733359 -48866571 + AluSx SINE Alu 1 295 -17 216 319 197 11 chrX 113733686 113733874 -48866056 - L2 LINE L2 -214 3058 2836 190 359 47 0 chrX 113734010 113734116 -48865814 - L2 LINE L2 -710 2604 2494 400 356 97 27 chrX 113735073 113735543 -48864387 + L2 LINE L2 2538 3080 -192 271 262 18 110 chrX 113736771 113736831 -48863099 + L3 LINE CR1 1209 1273 -304 2316 40 22 4 chrX 113736831 113737155 -48862775 - AluY SINE Alu 0 329 1 271 262 18 110 chrX 113737155 113737257 -48862673 + L3 LINE CR1 1273 1357 -220 272 369 41 26 chrX 113737337 113737532 -48862398 + L3 LINE CR1 908 1105 -472 1834 163 10 23 chrX 113737692 113737883 -48862047 + AluJo SINE Alu 2 189 -123 1556 227 119 70 chrX 113737883 113738670 -48861260 - LTR1B LTR ERV1 0 826 1 1834 163 10 23 chrX 113738670 113738784 -48861146 + AluJo SINE Alu 189 303 -9 375 353 0 8 chrX 113738789 113738908 -48861022 + MER5A DNA MER1_type 72 189 0 * 563 288 68 77 chrX 113738908 113739243 -48860687 + L3 LINE CR1 1225 1556 -21 914 336 91 31 chrX 113739336 113739840 -48860090 - L2 LINE L2 -1 3271 2799 2262 112 0 0 chrX 113739840 113740152 -48859778 + AluSx SINE Alu 1 312 0 914 336 91 31 chrX 113740152 113740706 -48859224 - L2 LINE L2 -473 2799 2131 1838 158 10 20 chrX 113741259 113741556 -48858374 + AluJo SINE Alu 1 294 -18 861 130 7 0 chrX 113741719 113741865 -48858065 + L1MA8 LINE L1 6135 6281 -10 23 110 0 0 chrX 113742508 113742608 -48857322 + AT_rich Low_complexity Low_complexity 1 100 0 278 26 26 0 chrX 113743533 113743572 -48856358 + (TA)n Simple_repeat Simple_repeat 2 41 0 1409 254 80 38 chrX 113745262 113746090 -48853840 + L2 LINE L2 2446 3313 0 221 136 0 23 chrX 113748348 113748392 -48851538 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 338 347 23 34 chrX 113748960 113749136 -48850794 + MIR3 SINE MIR 34 207 -1 679 104 12 4 chrX 113750128 113750239 -48849691 - L1MA2 LINE L1 -23 6280 6164 571 88 18 114 chrX 113750503 113750617 -48849313 + L1MB2 LINE L1 6062 6164 -7 343 309 54 7 chrX 113751148 113751297 -48848633 + L1M4 LINE L1 5233 5388 -758 823 201 0 7 chrX 113751314 113751463 -48848467 + AluJo SINE Alu 3 150 -162 856 225 108 9 chrX 113751464 113751677 -48848253 + MSTB LTR MaLR 1 234 -192 1081 184 9 33 chrX 113751677 113751889 -48848041 + AluJo SINE Alu 102 308 -4 245 207 0 0 chrX 113751892 113751950 -48847980 - L1MB8 LINE L1 -6 6172 6115 438 200 9 0 chrX 113751966 113752076 -48847854 - L1M4 LINE L1 -3600 2546 2436 2404 169 197 18 chrX 113752246 113752815 -48847115 + LTR51 LTR ERV1 1 671 0 2308 132 60 38 chrX 113752973 113753420 -48846510 - MSTB2 LTR MaLR 0 457 1 1956 110 0 11 chrX 113753483 113753613 -48846317 + AluSx SINE Alu 6 133 -179 2140 124 0 0 chrX 113753613 113753920 -48846010 + AluSc SINE Alu 1 307 -2 1956 110 0 11 chrX 113753920 113754052 -48845878 + AluSx SINE Alu 133 265 -47 297 172 0 0 chrX 113754275 113754333 -48845597 - L1MA8 LINE L1 -3 6288 6231 1082 189 8 8 chrX 113754408 113754667 -48845263 - L1MA4 LINE L1 -5 6295 6037 1514 184 55 0 chrX 113755094 113755349 -48844581 + AluJo SINE Alu 1 269 -43 763 220 0 0 chrX 113755641 113755832 -48844098 + L1ME LINE L1 3835 4025 -2121 787 199 7 0 chrX 113755915 113756066 -48843864 - FRAM SINE Alu 0 40 1 307 346 23 60 chrX 113756189 113756322 -48843608 - L2 LINE L2 -1 3271 3144 585 246 0 0 chrX 113756372 113756486 -48843444 + MIR SINE MIR 48 161 -101 1621 155 25 32 chrX 113756523 113756824 -48843106 + AluJb SINE Alu 10 308 0 267 284 16 39 chrX 113756933 113757060 -48842870 - L2 LINE L2 -75 3238 3115 279 364 56 31 chrX 113757160 113757322 -48842608 - L2 LINE L2 -215 3057 2892 289 371 0 8 chrX 113757426 113757550 -48842380 + MIR SINE MIR 26 148 -114 449 153 12 0 chrX 113757550 113757635 -48842295 + MER31A LTR ERV1 297 382 -103 1155 67 0 0 chrX 113757637 113757786 -48842144 - MER107 DNA MER1_type -48 149 1 1120 224 70 10 chrX 113757787 113758099 -48841831 - MLT1C LTR MaLR -131 336 6 1307 248 57 28 chrX 113758305 113759117 -48840813 + L1ME LINE L1 4878 5708 -454 541 254 203 6 chrX 113759196 113759383 -48840547 - MIR SINE MIR -7 255 35 1359 126 4 0 chrX 113760181 113760411 -48839519 - L1MA4 LINE L1 -1 6299 6069 2278 105 0 0 chrX 113760502 113760797 -48839133 - AluSx SINE Alu -17 295 1 907 211 0 0 chrX 113761102 113761263 -48838667 + AluSx SINE Alu 1 161 -151 828 118 7 28 chrX 113761308 113761452 -48838478 + AluJo SINE Alu 1 141 -171 1002 260 92 44 chrX 113761720 113762109 -48837821 - L3 LINE CR1 -97 1480 1073 430 237 175 104 chrX 113762155 113762463 -48837467 - LTR67 LTR ERVL -10 547 218 1701 152 3 25 chrX 113762463 113762766 -48837164 - AluJb SINE Alu 0 302 6 210 162 0 0 chrX 113762768 113762805 -48837125 - L2 LINE L2 -601 2713 2677 23 0 0 0 chrX 113763059 113763082 -48836848 + AT_rich Low_complexity Low_complexity 1 23 0 2047 130 3 0 chrX 113763082 113763374 -48836556 - AluSx SINE Alu -19 293 1 2701 31 9 0 chrX 113763474 113763798 -48836132 + L1PA4 LINE L1 5828 6154 -1 846 280 42 0 chrX 113763824 113764060 -48835870 + MIR SINE MIR 12 257 -5 260 358 69 12 chrX 113764121 113764294 -48835636 + L2 LINE L2 1902 2084 -1230 217 209 269 0 chrX 113764624 113764691 -48835239 + L2 LINE L2 3188 3272 0 840 132 0 8 chrX 113765075 113765196 -48834734 + FLAM_C SINE Alu 1 120 -23 404 207 37 7 chrX 113765246 113765381 -48834549 + GA-rich Low_complexity Low_complexity 4 142 0 794 169 11 11 chrX 113765444 113765622 -48834308 + GA-rich Low_complexity Low_complexity 3 180 0 444 172 0 0 chrX 113765689 113765776 -48834154 + GA-rich Low_complexity Low_complexity 2 88 0 1668 130 24 0 chrX 113765807 113766061 -48833869 + AluSx SINE Alu 50 309 -3 1377 165 64 0 chrX 113767611 113767761 -48832169 - AluSx SINE Alu -29 283 144 233 0 62 0 chrX 113767761 113767793 -48832137 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1377 165 64 0 chrX 113767793 113767908 -48832022 - AluSx SINE Alu -168 144 1 1637 183 3 14 chrX 113767918 113768208 -48831722 - AluJo SINE Alu -25 287 1 2160 128 0 0 chrX 113768449 113768745 -48831185 + AluSx SINE Alu 1 296 -16 590 125 0 10 chrX 113768799 113768895 -48831035 - AluS SINE Alu -217 95 1 1107 203 79 0 chrX 113768900 113769191 -48830739 - L1M4 LINE L1 -953 5193 4880 1423 208 28 22 chrX 113769203 113769603 -48830327 - L1M4 LINE L1 -1763 4383 3982 753 186 74 141 chrX 113769843 113770088 -48829842 - MER96B DNA MER1_type 0 417 157 2087 130 7 3 chrX 113770088 113770387 -48829543 - AluJo SINE Alu -12 300 1 753 186 74 141 chrX 113770387 113770481 -48829449 - MER96B DNA MER1_type -260 157 113 2306 100 0 10 chrX 113770481 113770792 -48829138 + AluSx SINE Alu 4 311 -1 753 186 74 141 chrX 113770792 113770898 -48829032 - MER96B DNA MER1_type -304 113 1 554 234 114 12 chrX 113771124 113771291 -48828639 + MIR SINE MIR 75 258 -4 1996 125 13 16 chrX 113771874 113772187 -48827743 - AluJb SINE Alu 0 312 1 252 282 103 0 chrX 113772709 113772787 -48827143 - L2 LINE L2 -49 3223 3138 12706 142 24 15 chrX 113773726 113773764 -48826166 - L1M1 LINE L1 -4323 3242 3206 1607 50 58 54 chrX 113773764 113774022 -48825908 - L1MA1 LINE L1 -3 6299 6041 12706 142 24 15 chrX 113774022 113774624 -48825306 - L1M1 LINE L1 -4359 3206 2611 1818 108 8 20 chrX 113774624 113774875 -48825055 - AluSg SINE Alu -16 294 47 12706 142 24 15 chrX 113774875 113774906 -48825024 - L1M1 LINE L1 -4954 2611 2582 1996 115 7 0 chrX 113774906 113775176 -48824754 - AluSx SINE Alu -40 272 1 12706 142 24 15 chrX 113775176 113777102 -48822828 - L1M1 LINE L1 -4983 2582 507 1515 104 50 5 chrX 113777102 113777322 -48822608 + MER30 DNA MER1_type 1 230 0 12706 142 24 15 chrX 113777322 113777820 -48822110 - L1M1 LINE L1 -7058 507 15 21 36 0 0 chrX 113778657 113778685 -48821245 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 113779109 113779134 -48820796 + AT_rich Low_complexity Low_complexity 1 25 0 209 182 0 0 chrX 113780871 113780904 -48819026 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1261 172 0 18 chrX 113781319 113781540 -48818390 - AluJo SINE Alu -11 301 85 2464 74 0 0 chrX 113784476 113784773 -48815157 + AluSx SINE Alu 1 297 -15 412 318 50 25 chrX 113786312 113786510 -48813420 + MIR3 SINE MIR 3 205 -3 4637 186 43 5 chrX 113786544 113787895 -48812035 - L1MB2 LINE L1 -7 6164 4762 1251 211 14 14 chrX 113788924 113789213 -48810717 - L1MB2 LINE L1 -1349 4797 4509 2637 88 25 80 chrX 113789216 113789615 -48810315 - MER51B LTR ERV1 0 377 1 5606 119 72 41 chrX 113789616 113790865 -48809065 - MER51B-int LTR ERV1 0 7816 6350 2433 79 0 7 chrX 113790865 113791170 -48808760 + AluY SINE Alu 1 303 -8 5606 119 72 41 chrX 113791170 113791188 -48808742 - MER51B-int LTR ERV1 -1466 6350 6334 13991 103 52 12 chrX 113791188 113794013 -48805917 - MER57-int LTR ERV1 -2572 4965 1806 849 127 44 22 chrX 113794022 113794230 -48805700 - MER4A LTR ERV1 -133 531 261 521 165 21 10 chrX 113794230 113794327 -48805603 - MER4A LTR ERV1 -566 98 1 658 56 67 0 chrX 113794327 113794416 -48805514 - MER51B-int LTR ERV1 -6213 1603 1509 5046 136 12 20 chrX 113794425 113795237 -48804693 - MER51B-int LTR ERV1 -6594 1222 417 1555 154 23 19 chrX 113795245 113795511 -48804419 - MER51B-int LTR ERV1 -7544 272 6 2602 96 2 103 chrX 113795514 113795933 -48803997 - MER51B LTR ERV1 0 377 1 2280 174 28 0 chrX 113795935 113796359 -48803571 - L1MB2 LINE L1 -1639 4507 4072 1993 173 10 15 chrX 113796347 113796751 -48803179 + L1MA1 LINE L1 4129 4530 -1616 * 863 128 75 0 chrX 113796751 113796884 -48803046 - MER57B LTR ERV1 -291 143 1 5471 110 11 0 chrX 113796884 113797638 -48802292 + L1MA1 LINE L1 5541 6302 0 383 281 23 23 chrX 113797861 113797989 -48801941 + MIR3 SINE MIR 66 193 -15 2092 113 27 3 chrX 113798394 113798694 -48801236 - AluSc SINE Alu -2 307 1 693 145 26 8 chrX 113798965 113799080 -48800850 - MER34C LTR ERV1 0 585 469 1132 154 0 94 chrX 113799080 113799206 -48800724 - Tigger1 DNA MER2_type 0 2418 2322 4131 126 14 5 chrX 113799206 113799770 -48800160 + MER61E LTR ERV1 1 569 0 1132 154 0 94 chrX 113799770 113799877 -48800053 - Tigger1 DNA MER2_type -96 2322 2207 1863 107 8 8 chrX 113799879 113800141 -48799789 + L1PA15 LINE L1 5827 6088 -77 1922 196 119 25 chrX 113800181 113800215 -48799715 - MLT1E2 LTR MaLR 0 626 597 1881 139 14 4 chrX 113800215 113800519 -48799411 + AluSx SINE Alu 1 307 0 1922 196 119 25 chrX 113800519 113800633 -48799297 - MLT1E2 LTR MaLR -29 597 495 4013 101 35 0 chrX 113800633 113801168 -48798762 - MER41A LTR ERV1 0 554 1 1922 196 119 25 chrX 113801168 113801461 -48798469 - MLT1E2 LTR MaLR -131 495 141 1402 178 63 33 chrX 113801804 113802107 -48797823 + AluJb SINE Alu 1 312 0 997 192 31 48 chrX 113802303 113802532 -48797398 - L1MB7 LINE L1 -9 6175 5951 1251 141 5 24 chrX 113802625 113802838 -48797092 + AluJo SINE Alu 3 211 -101 291 324 37 9 chrX 113803078 113803186 -48796744 - MIR3 SINE MIR -31 177 67 799 177 15 0 chrX 113803620 113803750 -48796180 + MER2 DNA MER2_type 4 135 -210 263 79 0 0 chrX 113803747 113803785 -48796145 - Alu SINE Alu -8 294 257 * 411 21 0 0 chrX 113803910 113803958 -48795972 + (CA)n Simple_repeat Simple_repeat 1 48 0 593 313 61 22 chrX 113803989 113804302 -48795628 - L1MB7 LINE L1 -348 5773 5494 1743 156 43 7 chrX 113804376 113804677 -48795253 + AluJb SINE Alu 1 312 0 934 189 57 0 chrX 113804948 113805107 -48794823 + MER5A DNA MER1_type 15 182 -7 211 213 164 33 chrX 113805448 113805509 -48794421 - MIR SINE MIR -178 84 16 1367 261 37 77 chrX 113805644 113805843 -48794087 + L2 LINE L2 2778 2983 -330 3407 93 48 72 chrX 113805843 113806383 -48793547 - MER1A DNA MER1_type 0 527 1 1367 261 37 77 chrX 113806383 113806734 -48793196 + L2 LINE L2 2983 3308 -5 2366 75 3 0 chrX 113806758 113807051 -48792879 - AluSg SINE Alu -15 295 2 654 140 28 0 chrX 113807343 113807450 -48792480 - FLAM_C SINE Alu -32 111 2 2205 118 0 0 chrX 113808063 113808368 -48791562 - AluSx SINE Alu -7 305 1 302 335 68 25 chrX 113808376 113808537 -48791393 - MIR3 SINE MIR -11 197 30 22 35 0 0 chrX 113808672 113808701 -48791229 + AT_rich Low_complexity Low_complexity 1 29 0 1031 169 11 0 chrX 113808701 113808885 -48791045 + AluJb SINE Alu 127 312 0 37 62 0 0 chrX 113808891 113808956 -48790974 + AT_rich Low_complexity Low_complexity 1 65 0 359 293 20 0 chrX 113809079 113809178 -48790752 + MIR3 SINE MIR 76 176 -32 300 227 151 42 chrX 113809494 113809613 -48790317 + MIR SINE MIR 19 150 -112 272 83 0 0 chrX 113809874 113809910 -48790020 - L1MB5 LINE L1 -31 6143 6108 2477 177 24 13 chrX 113809914 113810377 -48789553 - L1MB5 LINE L1 -105 6069 5602 1181 158 90 22 chrX 113810427 113810649 -48789281 + L1M4 LINE L1 5374 5610 -568 256 329 53 41 chrX 113811015 113811185 -48788745 + L2 LINE L2 2906 3077 -195 2053 129 10 0 chrX 113811355 113811664 -48788266 + AluJb SINE Alu 1 312 0 206 368 32 21 chrX 113811828 113811923 -48788007 + MIR SINE MIR 30 125 -83 392 257 300 7 chrX 113812060 113812200 -48787730 + MER5A DNA MER1_type 9 189 0 355 336 73 7 chrX 113812200 113812334 -48787596 + L2 LINE L2 2605 2747 -567 1029 198 0 0 chrX 113812337 113812504 -48787426 + FAM SINE Alu 1 167 -8 1068 144 43 0 chrX 113812622 113812809 -48787121 - AluJb SINE Alu -4 308 114 203 258 30 15 chrX 113812810 113812876 -48787054 + MIR SINE MIR 77 143 -119 688 185 25 60 chrX 113812906 113813011 -48786919 + L1MC5 LINE L1 7719 7815 -146 1089 236 108 75 chrX 113813011 113813587 -48786343 + MLT1G1 LTR MaLR 1 595 0 688 185 25 60 chrX 113813587 113813681 -48786249 + L1MC5 LINE L1 7815 7911 -50 322 314 88 59 chrX 113813848 113814087 -48785843 + L2 LINE L2 2809 3054 -218 315 269 91 96 chrX 113814242 113814439 -48785491 - L2 LINE L2 -89 3183 2988 248 254 17 0 chrX 113814456 113814515 -48785415 + L2 LINE L2 3249 3308 -5 900 195 0 0 chrX 113815159 113815328 -48784602 + AluJb SINE Alu 141 309 -3 199 302 0 0 chrX 113815364 113815407 -48784523 + MIR SINE MIR 20 62 -200 296 245 71 10 chrX 113815551 113815649 -48784281 + MIR3 SINE MIR 54 157 -51 1911 170 0 7 chrX 113816055 113816349 -48783581 + AluJo SINE Alu 1 292 -20 501 258 61 50 chrX 113816970 113817168 -48782762 + MIR SINE MIR 9 208 -54 2021 151 0 7 chrX 113818643 113818948 -48780982 - AluJb SINE Alu -9 303 1 902 92 0 63 chrX 113819376 113819518 -48780412 + FLAM_C SINE Alu 9 141 -2 286 230 0 40 chrX 113820958 113821032 -48778898 - MIR SINE MIR -12 250 180 882 160 14 14 chrX 113821055 113821199 -48778731 - FRAM SINE Alu -35 141 1 836 235 11 11 chrX 113821217 113821404 -48778526 - MIR SINE MIR -75 187 1 795 271 70 13 chrX 113821464 113821693 -48778237 - MIR SINE MIR -15 247 6 208 208 0 38 chrX 113821721 113821774 -48778156 - L3 LINE CR1 -156 1421 1371 2207 166 0 3 chrX 113822885 113823235 -48776695 + MLT1A1 LTR MaLR 1 349 -16 6441 66 5 64 chrX 113823318 113824332 -48775598 - SVA Other Other 0 1386 433 2793 91 30 100 chrX 113824398 113825135 -48774795 - SVA Other Other -518 868 393 486 280 53 8 chrX 113825739 113825871 -48774059 - MIR3 SINE MIR -61 147 10 531 301 40 17 chrX 113825884 113826057 -48773873 - MER5A DNA MER1_type -3 186 10 954 217 20 5 chrX 113826461 113826659 -48773271 + MIR SINE MIR 30 230 -32 191 236 14 0 chrX 113827378 113827450 -48772480 + GA-rich Low_complexity Low_complexity 1 73 0 2161 117 0 0 chrX 113828909 113829199 -48770731 + AluSx SINE Alu 1 290 -22 242 68 45 0 chrX 113829815 113829859 -48770071 + A-rich Low_complexity Low_complexity 3 48 0 2234 132 0 0 chrX 113829869 113830172 -48769758 + AluSq SINE Alu 1 303 -10 244 329 13 0 chrX 113830423 113830502 -48769428 - MIR SINE MIR -77 131 52 207 369 24 71 chrX 113830812 113831067 -48768863 + L2 LINE L2 2465 2707 -607 25 31 0 0 chrX 113831099 113831131 -48768799 + AT_rich Low_complexity Low_complexity 1 32 0 223 365 113 25 chrX 113831182 113831341 -48768589 + L2 LINE L2 3088 3260 -12 21 57 0 0 chrX 113831357 113831392 -48768538 + AT_rich Low_complexity Low_complexity 1 35 0 224 387 22 22 chrX 113831876 113832013 -48767917 + MIR SINE MIR 20 156 -106 306 315 14 89 chrX 113832020 113832233 -48767697 - L2 LINE L2 0 3272 3076 730 307 19 5 chrX 113832795 113833007 -48766923 + MIR SINE MIR 31 245 -17 180 219 24 0 chrX 113832979 113833020 -48766910 + L2 LINE L2 3262 3303 -10 * 198 337 10 82 chrX 113835268 113835366 -48764564 + MIR SINE MIR 34 124 -84 347 276 186 14 chrX 113836130 113836275 -48763655 - MIR3 SINE MIR -5 203 34 2866 64 8 11 chrX 113836470 113836844 -48763086 + THE1C LTR MaLR 3 375 0 312 250 44 0 chrX 113837067 113837135 -48762795 - MER91A DNA MER1_type 0 196 126 189 311 107 19 chrX 113837498 113837601 -48762329 + L2 LINE L2 2953 3064 -208 2314 98 0 3 chrX 113838092 113838398 -48761532 + AluSg SINE Alu 2 306 -4 5003 52 35 32 chrX 113838960 113839646 -48760284 + LTR12 LTR ERV1 1 688 0 779 289 65 13 chrX 113841194 113841426 -48758504 - MIR SINE MIR -15 247 4 377 256 54 16 chrX 113841426 113841554 -48758376 + MIR SINE MIR 129 261 -1 694 287 43 54 chrX 113841555 113841834 -48758096 - L3 LINE CR1 -32 1545 1270 231 267 62 103 chrX 113841921 113842067 -48757863 - L2 LINE L2 -631 2683 2544 1078 177 89 123 chrX 113842567 113842973 -48756957 - MSTD LTR MaLR -2 394 3 221 277 0 145 chrX 113843021 113843075 -48756855 + MIR3 SINE MIR 5 45 -163 2061 130 0 0 chrX 113843075 113843368 -48756562 + AluJb SINE Alu 1 293 -19 221 277 0 145 chrX 113843368 113843396 -48756534 + MIR3 SINE MIR 45 75 -133 334 215 0 0 chrX 113845090 113845155 -48754775 - MIR3 SINE MIR 0 208 144 210 118 0 0 chrX 113845399 113845433 -48754497 + (TAA)n Simple_repeat Simple_repeat 3 36 0 559 242 159 26 chrX 113845447 113845674 -48754256 - MIR SINE MIR -3 259 3 323 261 29 65 chrX 113846300 113846438 -48753492 - MIR SINE MIR -42 220 88 2090 106 3 3 chrX 113846938 113847262 -48752668 - AluSq SINE Alu 0 324 1 409 338 7 7 chrX 113847338 113847477 -48752453 - MIR SINE MIR -122 140 2 441 331 69 0 chrX 113847521 113847696 -48752234 - MIR SINE MIR -18 244 58 458 293 14 60 chrX 113848187 113848282 -48751648 + MIR SINE MIR 51 149 -113 1610 142 97 0 chrX 113848282 113848529 -48751401 - AluSx SINE Alu -31 281 11 458 293 14 60 chrX 113848529 113848648 -48751282 + MIR SINE MIR 149 255 -7 567 29 0 0 chrX 113850376 113850445 -48749485 + (CA)n Simple_repeat Simple_repeat 2 70 0 190 194 0 0 chrX 113850586 113850622 -48749308 - MIR3 SINE MIR -6 202 167 1079 128 27 37 chrX 113851634 113851852 -48748078 + AluJo SINE Alu 99 314 0 1664 180 16 29 chrX 113852145 113852451 -48747479 + AluJo SINE Alu 4 305 -7 5156 220 38 43 chrX 113852475 113854260 -48745670 + L1M4 LINE L1 2276 4052 -2094 290 236 160 35 chrX 113856594 113856738 -48743192 + MIR SINE MIR 86 247 -15 241 245 0 0 chrX 113857131 113857184 -48742746 - MIR SINE MIR 0 262 210 786 248 63 13 chrX 113857333 113857571 -48742359 - MIR SINE MIR -7 255 6 1950 164 16 16 chrX 113857636 113858001 -48741929 + MLT1A1 LTR MaLR 1 365 0 6992 88 9 17 chrX 113858528 113859624 -48740306 + L1MA2 LINE L1 5216 6303 -1 831 265 8 63 chrX 113859865 113860133 -48739797 + MIR SINE MIR 6 258 -4 1731 105 12 12 chrX 113860737 113860994 -48738936 - L1PA10 LINE L1 -5 6163 5907 882 214 17 0 chrX 113861275 113861448 -48738482 - MER5B DNA MER1_type 0 178 3 1851 203 41 49 chrX 113862355 113862862 -48737068 + MLT1D LTR MaLR 1 503 -2 486 0 0 0 chrX 113863182 113863236 -48736694 + (TG)n Simple_repeat Simple_repeat 1 54 0 854 138 8 0 chrX 113863236 113863351 -48736579 - AluJb SINE Alu -193 119 1 21 36 0 0 chrX 113863434 113863462 -48736468 + AT_rich Low_complexity Low_complexity 1 28 0 2334 105 7 0 chrX 113863576 113863880 -48736050 + AluSg SINE Alu 1 306 -4 718 160 0 0 chrX 113865308 113865433 -48734497 - MER58 DNA MER1_type -1 2419 2295 * 1746 177 102 26 chrX 113865423 113866064 -48733866 - Cheshire DNA MER1_type -865 1555 964 619 168 34 25 chrX 113866064 113866183 -48733747 + FLAM_A SINE Alu 2 121 -12 1746 177 102 26 chrX 113866183 113866318 -48733612 - Cheshire DNA MER1_type -1456 964 259 2144 125 0 0 chrX 113866329 113866624 -48733306 - AluSx SINE Alu -17 295 1 1269 88 0 20 chrX 113866624 113866828 -48733102 - Tigger2 DNA MER2_type -59 2659 2460 3876 148 32 6 chrX 113866879 113867602 -48732328 - Tigger2 DNA MER2_type -1976 742 1 955 155 10 21 chrX 113867602 113867738 -48732192 - Cheshire DNA MER1_type -2160 260 125 2085 83 11 0 chrX 113867738 113868002 -48731928 - AluSc SINE Alu -5 304 38 955 155 10 21 chrX 113868002 113868058 -48731872 - Cheshire DNA MER1_type -2295 125 70 4166 179 19 23 chrX 113868061 113869154 -48730776 + L1MB2 LINE L1 5041 6130 -41 1757 164 3 3 chrX 113869154 113869441 -48730489 + AluJo SINE Alu 1 287 -25 1242 134 45 5 chrX 113869624 113869847 -48730083 + L1MB2 LINE L1 5938 6169 -2 324 266 25 0 chrX 113869856 113869935 -48729995 - Cheshire DNA MER1_type -2338 82 2 235 263 221 0 chrX 113870306 113870401 -48729529 + MIR3 SINE MIR 72 187 -21 2204 91 30 7 chrX 113870681 113870979 -48728951 - AluSx SINE Alu -7 305 1 2241 107 7 0 chrX 113871111 113871421 -48728509 - AluSx SINE Alu 0 312 1 437 188 103 32 chrX 113872163 113872322 -48727608 - MIR SINE MIR -45 217 50 2036 69 0 0 chrX 113872445 113872692 -48727238 + AluY SINE Alu 33 279 -32 223 49 49 0 chrX 113872694 113872735 -48727195 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1397 211 0 0 chrX 113873482 113873719 -48726211 - AluJb SINE Alu -75 237 1 1340 179 0 52 chrX 113873908 113874176 -48725754 + AluJo SINE Alu 26 279 -33 759 22 0 0 chrX 113874177 113874266 -48725664 + (GAAA)n Simple_repeat Simple_repeat 1 89 0 522 191 96 55 chrX 113874295 113874567 -48725363 + L1MC5 LINE L1 7477 7759 -202 276 30 0 0 chrX 113874570 113874603 -48725327 + (TG)n Simple_repeat Simple_repeat 1 33 0 6584 85 8 0 chrX 113874775 113875856 -48724074 + L1PA10 LINE L1 5076 6163 -5 205 328 16 0 chrX 113876137 113876198 -48723732 - L2 LINE L2 -1 3271 3210 321 280 40 0 chrX 113876215 113876290 -48723640 - MIR3 SINE MIR -48 160 83 205 250 0 0 chrX 113876971 113877015 -48722915 + (TTCG)n Simple_repeat Simple_repeat 2 45 0 229 367 73 18 chrX 113877161 113877270 -48722660 + MIR SINE MIR 11 125 -137 903 176 0 0 chrX 113877403 113877545 -48722385 + FRAM SINE Alu 5 146 -30 183 42 0 0 chrX 113877547 113877571 -48722359 + (TC)n Simple_repeat Simple_repeat 1 24 0 510 17 0 0 chrX 113877572 113877631 -48722299 + (TG)n Simple_repeat Simple_repeat 1 59 0 1105 212 67 69 chrX 113877935 113878398 -48721532 + LTR16B LTR ERVL 3 464 0 231 278 56 46 chrX 113878498 113878606 -48721324 - L2 LINE L2 -1 3271 3163 506 250 283 30 chrX 113879138 113879506 -48720424 + MLT1J LTR MaLR 1 461 -50 612 187 28 0 chrX 113879781 113880007 -48719923 + (TA)n Simple_repeat Simple_repeat 1 232 0 241 83 42 0 chrX 113880010 113880058 -48719872 - L1MC4 LINE L1 -1339 6703 6654 596 236 0 9 chrX 113880060 113880279 -48719651 + (CATATA)n Simple_repeat Simple_repeat 1 216 0 252 256 23 0 chrX 113880292 113880378 -48719552 - L1MC4 LINE L1 -1339 6703 6616 626 234 0 12 chrX 113880381 113880552 -48719378 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 325 255 0 43 chrX 113880554 113880648 -48719282 - L1MC4 LINE L1 -1339 6703 6614 426 263 0 0 chrX 113880650 113880783 -48719147 + (TA)n Simple_repeat Simple_repeat 2 134 0 326 283 0 22 chrX 113880784 113880876 -48719054 - L1MC4 LINE L1 -1339 6703 6614 * 351 256 23 0 chrX 113880801 113880887 -48719043 + L1MC4 LINE L1 6615 6702 -1340 311 238 71 0 chrX 113880898 113880982 -48718948 - L1MC4 LINE L1 -1339 6703 6614 * 319 287 23 0 chrX 113880910 113880997 -48718933 + L1MC4 LINE L1 6614 6702 -1340 225 278 22 22 chrX 113880998 113881088 -48718842 + L1MC4 LINE L1 6614 6703 -1339 308 230 0 100 chrX 113881116 113881216 -48718714 + L1MC4 LINE L1 6614 6703 -1339 260 247 0 12 chrX 113881219 113881300 -48718630 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 233 318 0 0 chrX 113881301 113881389 -48718541 + L1MC4 LINE L1 6616 6703 -1339 281 284 0 0 chrX 113881393 113881481 -48718449 + L1MC4 LINE L1 6616 6703 -1339 253 303 0 0 chrX 113881511 113881600 -48718330 - L1MC4 LINE L1 -1339 6703 6615 * 295 258 0 0 chrX 113881550 113881639 -48718291 + L1MC4 LINE L1 6615 6703 -1339 267 189 0 0 chrX 113881639 113881692 -48718238 + (TA)n Simple_repeat Simple_repeat 2 54 0 324 276 11 11 chrX 113881694 113881781 -48718149 + L1MC4 LINE L1 6617 6703 -1339 * 328 247 24 0 chrX 113881709 113881794 -48718136 - L1MC4 LINE L1 -1341 6701 6615 245 182 18 0 chrX 113881798 113881853 -48718077 + (TA)n Simple_repeat Simple_repeat 1 56 0 214 189 0 0 chrX 113881910 113881947 -48717983 + L2 LINE L2 3231 3267 -5 279 0 0 0 chrX 113881976 113882007 -48717923 + (CA)n Simple_repeat Simple_repeat 2 32 0 291 230 68 40 chrX 113882761 113882835 -48717095 + L2 LINE L2 3190 3265 -7 433 338 40 18 chrX 113882835 113883060 -48716870 + L2 LINE L2 1942 2171 -1143 931 291 93 54 chrX 113883123 113884225 -48715705 - L1MEd LINE L1 -4969 1150 6 203 365 100 52 chrX 113884388 113884769 -48715161 + L2 LINE L2 2404 2802 -512 357 294 10 0 chrX 113884877 113884979 -48714951 + L2 LINE L2 2951 3053 -219 672 260 147 0 chrX 113885137 113885341 -48714589 + MIR SINE MIR 29 262 0 230 116 23 0 chrX 113886842 113886885 -48713045 + (TG)n Simple_repeat Simple_repeat 1 44 0 215 188 31 47 chrX 113886885 113886949 -48712981 + GA-rich Low_complexity Low_complexity 2 64 0 3615 125 86 3 chrX 113887468 113888005 -48711925 - MER72 LTR ERV1 0 722 124 198 0 0 0 chrX 113888005 113888027 -48711903 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 3615 125 86 3 chrX 113888027 113888087 -48711843 - MER72 LTR ERV1 -598 124 70 826 206 38 0 chrX 113888094 113888360 -48711570 - AluJb SINE Alu 0 418 147 443 209 0 0 chrX 113888377 113888463 -48711467 - MER72 LTR ERV1 -627 95 10 1852 203 0 3 chrX 113889095 113889450 -48710480 - MLT1A1 LTR MaLR -11 354 1 349 241 262 7 chrX 113889459 113889600 -48710330 - MER5B DNA MER1_type 0 178 2 302 292 22 0 chrX 113889859 113889948 -48709982 + MER81 DNA DNA 24 114 0 1494 151 48 33 chrX 113890489 113890761 -48709169 - AluSx SINE Alu -1 311 36 1672 159 51 7 chrX 113890775 113891070 -48708860 - AluJb SINE Alu -4 308 1 520 300 37 84 chrX 113891265 113891298 -48708632 + MIR SINE MIR 2 35 -227 2011 150 0 0 chrX 113891298 113891591 -48708339 + AluSx SINE Alu 1 293 -19 520 300 37 84 chrX 113891591 113891766 -48708164 + MIR SINE MIR 35 197 -65 984 178 72 19 chrX 113891766 113891974 -48707956 - MER20 DNA MER1_type 0 219 1 520 300 37 84 chrX 113891974 113892037 -48707893 + MIR SINE MIR 197 261 -1 1381 339 71 29 chrX 113892748 113893579 -48706351 + L2 LINE L2 1980 2845 -469 500 271 142 88 chrX 113893630 113893969 -48705961 + L2 LINE L2 2916 3272 0 2048 100 58 7 chrX 113894018 113894309 -48705621 - AluSx SINE Alu -6 306 1 181 297 44 77 chrX 113895508 113895599 -48704331 + L2 LINE L2 3199 3286 -27 240 346 74 37 chrX 113895880 113896042 -48703888 + L2 LINE L2 2928 3095 -177 306 0 0 0 chrX 113897285 113897319 -48702611 + (CA)n Simple_repeat Simple_repeat 2 35 0 2617 143 10 24 chrX 113897324 113897833 -48702097 + L1MB7 LINE L1 5664 6165 -19 270 298 11 32 chrX 113897912 113898006 -48701924 + MER5A DNA MER1_type 96 187 -2 1383 117 5 5 chrX 113898573 113898769 -48701161 + AluSq SINE Alu 1 196 -117 307 283 47 38 chrX 113899216 113899322 -48700608 - L2 LINE L2 -8 3264 3158 879 132 0 0 chrX 113900626 113900755 -48699175 - AluSp/q SINE Alu -4 309 181 2226 131 19 27 chrX 113901300 113901667 -48698263 - THE1B LTR MaLR 0 364 1 1706 161 19 9 chrX 113902442 113902759 -48697171 - L1MC1 LINE L1 -18 6315 5996 976 176 42 37 chrX 113902813 113903029 -48696901 - MER20 DNA MER1_type -2 217 1 224 146 49 0 chrX 113903111 113903152 -48696778 - L2 LINE L2 -10 3303 3261 193 250 0 0 chrX 113904126 113904166 -48695764 + MIR3 SINE MIR 159 198 -10 1718 187 0 0 chrX 113904327 113904611 -48695319 + AluJo SINE Alu 1 284 -28 1469 185 25 0 chrX 113905389 113905690 -48694240 - MER58B DNA MER1_type -6 335 28 1493 161 10 94 chrX 113907558 113907857 -48692073 + AluJb SINE Alu 1 274 -38 234 196 0 0 chrX 113907857 113907903 -48692027 + (TA)n Simple_repeat Simple_repeat 1 46 0 266 318 64 17 chrX 113908106 113908279 -48691651 - L2 LINE L2 -1565 1749 1569 182 273 91 15 chrX 113908465 113908531 -48691399 - MIR3 SINE MIR -133 75 5 2401 80 3 0 chrX 113910202 113910502 -48689428 - AluSq SINE Alu -12 301 1 1222 255 154 0 chrX 113910919 113911288 -48688642 - L2 LINE L2 0 3313 2888 3070 144 46 29 chrX 113911377 113911434 -48688496 + MER41D LTR ERV1 1 56 -501 2264 84 0 3 chrX 113911434 113911760 -48688170 + AluSx SINE Alu 1 325 0 3070 144 46 29 chrX 113911760 113912249 -48687681 + MER41D LTR ERV1 56 557 0 628 284 82 0 chrX 113912545 113912739 -48687191 - MIR SINE MIR 0 262 53 2596 11 0 3 chrX 113912750 113913035 -48686895 + AluYa5 SINE Alu 17 300 -11 2518 41 0 0 chrX 113913710 113914002 -48685928 - AluY SINE Alu -5 306 15 3432 173 27 13 chrX 113914243 113914944 -48684986 + L1MB5 LINE L1 5450 6160 -14 228 111 0 0 chrX 113914960 113914996 -48684934 + (GA)n Simple_repeat Simple_repeat 1 36 0 1030 220 115 14 chrX 113915326 113915670 -48684260 + MSTD LTR MaLR 1 428 0 297 0 0 0 chrX 113916547 113916580 -48683350 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 330 326 67 21 chrX 113918100 113918293 -48681637 - MIR SINE MIR -41 221 20 362 157 0 0 chrX 113918503 113918573 -48681357 - L1MB8 LINE L1 -6 6172 6103 300 183 61 0 chrX 113918586 113918668 -48681262 - L1MB3 LINE L1 0 6183 6097 1544 60 5 0 chrX 113918850 113919049 -48680881 - L1PB1 LINE L1 -2 6149 5950 374 246 102 6 chrX 113919053 113919220 -48680710 - MARNA DNA Mariner -218 368 186 2002 173 14 11 chrX 113919257 113919621 -48680309 - MLT1A1 LTR MaLR 0 365 1 264 297 44 0 chrX 113920359 113920450 -48679480 + L2 LINE L2 2228 2322 -992 337 283 53 53 chrX 113920455 113920568 -48679362 + MER91C DNA MER1_type 2 114 -26 418 259 20 117 chrX 113920848 113920951 -48678979 - MIR3 SINE MIR 0 208 131 2154 122 3 0 chrX 113920951 113921254 -48678676 + AluSq SINE Alu 1 304 -9 418 259 20 117 chrX 113921254 113921347 -48678583 - MIR3 SINE MIR -77 131 31 902 208 0 0 chrX 113921691 113921864 -48678066 + FRAM SINE Alu 1 173 -3 2543 206 71 18 chrX 113921905 113922569 -48677361 + L1MD2 LINE L1 5649 6347 -12 492 305 73 30 chrX 113922971 113923204 -48676726 + MIR SINE MIR 18 260 -2 477 309 53 68 chrX 113923243 113923469 -48676461 + L1MC4a LINE L1 3952 4180 -1966 1757 160 12 35 chrX 113923469 113923788 -48676142 + AluJo SINE Alu 1 312 0 477 309 53 68 chrX 113923788 113924050 -48675880 + L1MC4a LINE L1 4180 4433 -1713 335 200 89 50 chrX 113924095 113924233 -48675697 + L1MC4a LINE L1 4496 4627 -1519 322 74 37 0 chrX 113924233 113924287 -48675643 + (TA)n Simple_repeat Simple_repeat 2 57 0 2131 111 7 3 chrX 113924287 113924575 -48675355 - AluSq SINE Alu -24 289 1 335 200 89 50 chrX 113924575 113924615 -48675315 + L1MC4a LINE L1 4626 4682 -1464 662 212 8 0 chrX 113924664 113924782 -48675148 + FLAM_A SINE Alu 1 119 -14 500 310 58 27 chrX 113925052 113925673 -48674257 + L1MC4a LINE L1 5254 5577 -594 27 0 0 0 chrX 113925855 113925882 -48674048 + AT_rich Low_complexity Low_complexity 1 27 0 418 287 60 78 chrX 113925884 113926215 -48673715 + L1ME2 LINE L1 3427 3751 -2395 1979 161 0 3 chrX 113926221 113926526 -48673404 + AluJb SINE Alu 1 304 -8 2354 151 19 0 chrX 113926690 113927101 -48672829 + MSTB2 LTR MaLR 3 421 -36 1579 216 115 4 chrX 113927111 113927564 -48672366 + L1ME1 LINE L1 5646 6148 -18 996 270 72 38 chrX 113927597 113928182 -48671748 + L1ME2 LINE L1 5344 5948 -216 1702 136 74 57 chrX 113928534 113928901 -48671029 - THE1C LTR MaLR 0 375 3 668 240 63 75 chrX 113928905 113929159 -48670771 + MIR SINE MIR 12 262 0 270 386 19 13 chrX 113929183 113929341 -48670589 - L2 LINE L2 -216 3056 2898 1512 179 20 10 chrX 113930621 113930917 -48669013 + AluJo SINE Alu 1 299 -13 2212 108 9 16 chrX 113931018 113931333 -48668597 + AluSq SINE Alu 1 313 0 189 0 0 0 chrX 113932736 113932757 -48667173 + (A)n Simple_repeat Simple_repeat 1 21 0 2108 112 0 3 chrX 113932773 113933084 -48666846 - AluSg SINE Alu 0 310 1 2034 147 0 6 chrX 113933877 113934191 -48665739 + AluJo SINE Alu 1 312 0 327 224 98 14 chrX 113934521 113934664 -48665266 - L1ME4a LINE L1 -3 6118 5964 392 224 51 106 chrX 113934892 113935034 -48664896 + MLT1L LTR MaLR 238 469 -146 392 247 0 0 chrX 113935190 113935283 -48664647 - L1ME4a LINE L1 -230 5891 5799 1957 141 26 7 chrX 113935350 113935626 -48664304 + AluSx SINE Alu 1 285 -27 216 0 0 0 chrX 113935626 113935650 -48664280 + (CAAG)n Simple_repeat Simple_repeat 1 24 0 1957 141 26 7 chrX 113935650 113935679 -48664251 + AluSx SINE Alu 285 312 0 504 0 0 0 chrX 113935679 113935735 -48664195 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 325 182 0 15 chrX 113935737 113935803 -48664127 + AluJo SINE Alu 73 137 -165 1529 84 192 16 chrX 113935803 113936053 -48663877 - AluSq SINE Alu -8 295 2 411 216 102 27 chrX 113937681 113937834 -48662096 + MIR SINE MIR 3 162 -46 1308 155 44 48 chrX 113938412 113938683 -48661247 + AluJo SINE Alu 18 287 -25 994 233 23 5 chrX 113938764 113938983 -48660947 + MER58A DNA MER1_type 2 224 0 25 0 0 0 chrX 113939916 113939941 -48659989 + AT_rich Low_complexity Low_complexity 1 25 0 2357 69 31 0 chrX 113940028 113940318 -48659612 - AluSp SINE Alu -13 300 2 1463 288 49 42 chrX 113941083 113941561 -48658369 + L2 LINE L2 2682 3180 -133 2493 53 0 3 chrX 113941561 113941863 -48658067 + AluY SINE Alu 1 301 -10 1463 288 49 42 chrX 113941863 113941999 -48657931 + L2 LINE L2 3180 3313 0 1200 211 11 29 chrX 113942363 113942638 -48657292 + AluJb SINE Alu 36 305 -7 1675 173 16 16 chrX 113943455 113943767 -48656163 + AluJb SINE Alu 1 312 0 1757 180 7 7 chrX 113944006 113944289 -48655641 - AluJb SINE Alu -29 283 1 1776 174 11 0 chrX 113944539 113944814 -48655116 + AluJb SINE Alu 1 278 -34 198 0 0 0 chrX 113944820 113944842 -48655088 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chrX 113945402 113945424 -48654506 + AT_rich Low_complexity Low_complexity 1 22 0 799 155 61 14 chrX 113945637 113945785 -48654145 - FRAM SINE Alu -11 155 1 2050 197 50 2 chrX 113946700 113947137 -48652793 + L1MB5 LINE L1 5717 6174 0 2313 101 3 3 chrX 113947141 113947448 -48652482 + AluSp SINE Alu 1 307 -6 22 0 0 0 chrX 113947532 113947554 -48652376 + AT_rich Low_complexity Low_complexity 1 22 0 1527 119 5 5 chrX 113947582 113947800 -48652130 - AluSg/x SINE Alu -10 300 83 1518 172 39 78 chrX 113948381 113948765 -48651165 + MLT1A2 LTR MaLR 6 374 0 29 0 0 0 chrX 113950253 113950282 -48649648 + AT_rich Low_complexity Low_complexity 1 29 0 1999 159 3 0 chrX 113950323 113950619 -48649311 + AluJb SINE Alu 1 297 -15 261 353 118 0 chrX 113950702 113950821 -48649109 + MIR SINE MIR 79 211 -51 34 42 0 0 chrX 113950916 113950964 -48648966 + AT_rich Low_complexity Low_complexity 1 48 0 350 228 0 40 chrX 113951278 113951379 -48648551 - MARNA DNA Mariner -28 558 462 5650 243 143 22 chrX 113951483 113952958 -48646972 + L2 LINE L2 971 2776 -537 2341 138 46 14 chrX 113952958 113953371 -48646559 + MSTA LTR MaLR 3 428 0 5650 243 143 22 chrX 113953371 113953979 -48645951 + L2 LINE L2 2776 3309 -4 1491 201 30 27 chrX 113954497 113954630 -48645300 + AluJb SINE Alu 2 133 -317 2089 102 34 14 chrX 113954630 113954766 -48645164 + AluSx SINE Alu 1 133 -179 2172 106 14 0 chrX 113954766 113955059 -48644871 + AluSp SINE Alu 1 297 -16 2089 102 34 14 chrX 113955059 113955216 -48644714 + AluSx SINE Alu 133 300 -12 1491 201 30 27 chrX 113955216 113955530 -48644400 + AluJb SINE Alu 133 450 0 380 357 95 48 chrX 113955788 113956503 -48643427 - L2 LINE L2 -54 3259 2503 2126 167 24 3 chrX 113956531 113956908 -48643022 + MSTB LTR MaLR 42 426 0 232 337 12 0 chrX 113956915 113957001 -48642929 - L2 LINE L2 -815 2499 2413 926 266 69 82 chrX 113957377 113957987 -48641943 - MLT1L LTR MaLR -13 602 1 240 299 8 8 chrX 113958150 113958244 -48641686 + MER5A DNA MER1_type 4 96 -93 684 174 18 138 chrX 113958246 113958328 -48641602 + MLT1A1 LTR MaLR 3 93 -272 2026 131 3 35 chrX 113958328 113958641 -48641289 + AluJo SINE Alu 2 304 -8 684 174 18 138 chrX 113958641 113958776 -48641154 + MLT1A1 LTR MaLR 93 194 -171 2057 145 0 19 chrX 113958844 113959161 -48640769 - AluJb SINE Alu -1 311 1 659 171 62 0 chrX 113959191 113959320 -48640610 + MLT1A1 LTR MaLR 229 365 0 2706 207 24 68 chrX 113959435 113960415 -48639515 + L1ME1 LINE L1 5236 6162 -4 264 238 57 0 chrX 113960433 113960538 -48639392 - MER103 DNA DNA -4 162 52 823 212 0 30 chrX 113960538 113960703 -48639227 + FRAM SINE Alu 1 156 -20 808 245 16 0 chrX 113960900 113961084 -48638846 + MER5A DNA MER1_type 1 187 -2 309 68 0 0 chrX 113961258 113961302 -48638628 + (TCC)n Simple_repeat Simple_repeat 1 44 0 1838 158 0 26 chrX 113961302 113961605 -48638325 - AluJb SINE Alu -17 295 1 926 185 40 5 chrX 113961785 113962037 -48637893 + L1MB7 LINE L1 5180 5440 -738 1800 169 102 5 chrX 113962093 113962109 -48637821 + L1MC2 LINE L1 5816 5829 -515 2910 108 2 0 chrX 113962109 113962536 -48637394 + L1PA14 LINE L1 5725 6152 -9 1800 169 102 5 chrX 113962536 113962958 -48636972 + L1MC2 LINE L1 5829 6297 -47 2942 188 11 38 chrX 113962962 113963421 -48636509 + L1MB7 LINE L1 5452 5922 -262 2256 96 0 0 chrX 113963421 113963701 -48636229 + AluSx SINE Alu 1 280 -32 2942 188 11 38 chrX 113963701 113963870 -48636060 + L1MB7 LINE L1 5922 6060 -124 1854 127 53 61 chrX 113963870 113964248 -48635682 - THE1C LTR MaLR 0 375 1 2942 188 11 38 chrX 113964248 113964351 -48635579 + L1MB7 LINE L1 6060 6164 -20 1219 226 150 47 chrX 113965038 113965490 -48634440 + MLT1D LTR MaLR 1 499 -6 26 0 0 0 chrX 113965802 113965828 -48634102 + AT_rich Low_complexity Low_complexity 1 26 0 1902 167 10 13 chrX 113965835 113966225 -48633705 - L1MB5 LINE L1 -23 6151 5763 861 146 55 18 chrX 113966226 113966391 -48633539 + THE1C LTR MaLR 2 172 -203 374 252 7 27 chrX 113966405 113966552 -48633378 - L1ME4a LINE L1 -283 5838 5695 1533 232 28 0 chrX 113966606 113967028 -48632902 + L1ME4a LINE L1 4918 5351 -795 1159 98 12 6 chrX 113967065 113967238 -48632692 - L1PB1 LINE L1 -5 6146 5973 371 147 38 38 chrX 113967238 113967314 -48632616 + L1M LINE L1 5332 5392 -786 395 218 97 36 chrX 113967329 113967494 -48632436 + L1ME4a LINE L1 5936 6110 -11 352 161 25 0 chrX 113968318 113968399 -48631531 + CT-rich Low_complexity Low_complexity 2 84 0 666 340 159 32 chrX 113969284 113970075 -48629855 + L2 LINE L2 2018 2909 -405 21 0 0 0 chrX 113970573 113970594 -48629336 + AT_rich Low_complexity Low_complexity 1 21 0 349 378 97 42 chrX 113971391 113971496 -48628434 - L2 LINE L2 -12 3260 3162 1958 161 3 7 chrX 113971496 113971801 -48628129 + AluJb SINE Alu 2 305 -7 349 378 97 42 chrX 113971801 113971873 -48628057 - L2 LINE L2 -110 3162 3095 2032 154 0 0 chrX 113971873 113972184 -48627746 + AluSx SINE Alu 1 311 -1 349 378 97 42 chrX 113972184 113972726 -48627204 - L2 LINE L2 -177 3095 2513 213 114 29 0 chrX 113972931 113972966 -48626964 + (TG)n Simple_repeat Simple_repeat 2 37 0 810 203 126 5 chrX 113973720 113973927 -48626003 + Charlie2 DNA MER1_type 93 324 -2458 2110 184 75 94 chrX 113973957 113974644 -48625286 + Charlie2 DNA MER1_type 1863 2562 -300 2386 94 3 0 chrX 113974644 113974943 -48624987 + AluSx SINE Alu 2 301 -11 2110 184 75 94 chrX 113974943 113974971 -48624959 + Charlie2 DNA MER1_type 2562 2589 -273 1965 172 0 16 chrX 113974971 113975285 -48624645 + AluJb SINE Alu 4 312 0 2110 184 75 94 chrX 113975285 113975518 -48624412 + Charlie2 DNA MER1_type 2589 2794 -68 761 164 0 45 chrX 113975535 113975669 -48624261 + FLAM_C SINE Alu 6 133 -10 307 191 0 16 chrX 113975678 113975741 -48624189 + Charlie2 DNA MER1_type 2799 2860 -2 464 210 65 45 chrX 113976153 113976353 -48623577 + LTR16A1 LTR ERVL 84 287 -170 698 152 16 0 chrX 113976707 113976832 -48623098 - AluSq/x SINE Alu -186 127 1 11353 157 65 43 chrX 113976837 113977512 -48622418 - L1MCa LINE L1 -3241 3185 2527 2142 117 14 0 chrX 113977512 113977803 -48622127 - AluSq SINE Alu -18 295 1 11353 157 65 43 chrX 113977803 113977917 -48622013 - L1MCa LINE L1 -3899 2527 2417 2000 159 0 3 chrX 113977917 113978243 -48621687 + AluSx SINE Alu 5 312 0 11353 157 65 43 chrX 113978243 113980084 -48619846 - L1MCa LINE L1 -4009 2417 619 1705 182 0 21 chrX 113980084 113980370 -48619560 + AluJb SINE Alu 17 296 -16 11353 157 65 43 chrX 113980370 113980407 -48619523 - L1MCa LINE L1 -5807 619 584 1950 175 0 0 chrX 113980407 113980715 -48619215 + AluSx SINE Alu 1 308 -4 11353 157 65 43 chrX 113980715 113981142 -48618788 - L1MCa LINE L1 -5842 584 19 1964 162 3 0 chrX 113981445 113981748 -48618182 - AluJo SINE Alu -8 304 1 218 285 92 85 chrX 113981748 113981878 -48618052 - L2 LINE L2 -954 2360 2230 743 195 0 0 chrX 113981984 113982102 -48617828 + FLAM_C SINE Alu 1 118 -15 1845 85 0 0 chrX 113982225 113982484 -48617446 - HERV9 LTR ERV1 -549 7850 7592 * 19625 97 11 17 chrX 113982481 113985952 -48613978 - HERV9 LTR ERV1 -2001 437 1 361 245 10 0 chrX 113985952 113986050 -48613880 - LTR30 LTR ERV1 -80 642 544 1433 83 57 136 chrX 113986050 113986353 -48613577 - LTR12 LTR ERV1 -421 2017 57 240 250 0 0 chrX 113986357 113986409 -48613521 - LTR30 LTR ERV1 -670 52 1 431 242 16 8 chrX 113986527 113986651 -48613279 - MER50 LTR ERV1 -298 436 312 245 231 0 0 chrX 113986682 113986734 -48613196 + LTR30 LTR ERV1 1 52 -670 1496 88 82 111 chrX 113986734 113987105 -48612825 + LTR12 LTR ERV1 57 2017 -421 339 245 10 0 chrX 113987105 113987203 -48612727 + LTR30 LTR ERV1 544 642 -80 724 117 0 0 chrX 113987203 113987306 -48612624 + LTR12 LTR ERV1 612 714 0 439 253 144 57 chrX 113987308 113987537 -48612393 - MER50 LTR ERV1 -464 270 22 774 204 12 43 chrX 113988608 113988770 -48611160 - AluJo SINE Alu -34 278 122 410 289 150 17 chrX 113988775 113988948 -48610982 + MIR SINE MIR 47 242 -20 2211 53 19 0 chrX 113989711 113989977 -48609953 - L1PA13 LINE L1 -2 6161 5891 2252 86 164 0 chrX 113990004 113990328 -48609602 + MER51B LTR ERV1 1 377 0 2429 80 0 3 chrX 113990405 113990716 -48609214 - AluSg SINE Alu 0 310 1 393 343 27 7 chrX 113991123 113991269 -48608661 - MIR SINE MIR -80 182 34 2266 84 0 42 chrX 113991468 113991779 -48608151 + AluSx SINE Alu 1 298 -14 355 302 9 9 chrX 113991802 113991908 -48608022 + MIR SINE MIR 38 143 -119 821 224 37 86 chrX 113992088 113992247 -48607683 + L1MD2 LINE L1 5753 5896 -448 1995 142 10 16 chrX 113992247 113992558 -48607372 + AluJo SINE Alu 1 309 -3 821 224 37 86 chrX 113992558 113992690 -48607240 + L1MD2 LINE L1 5896 6033 -311 1309 245 147 33 chrX 113992720 113993202 -48606728 + MLT1E1 LTR MaLR 118 654 0 656 239 6 25 chrX 113993202 113993361 -48606569 + L1ME1 LINE L1 6011 6166 0 230 135 27 122 chrX 113993364 113993438 -48606492 + L1ME1 LINE L1 6096 6162 -4 1530 167 26 68 chrX 113993459 113993522 -48606408 + AluJo SINE Alu 1 65 -237 2150 115 7 0 chrX 113993522 113993817 -48606113 - AluSx SINE Alu -15 297 1 1530 167 26 68 chrX 113993817 113994042 -48605888 + AluJo SINE Alu 65 278 -24 207 0 0 0 chrX 113994042 113994065 -48605865 + (CATA)n Simple_repeat Simple_repeat 3 25 0 1530 167 26 68 chrX 113994065 113994086 -48605844 + AluJo SINE Alu 278 298 -4 2376 147 17 0 chrX 113994648 113995008 -48604922 + MER47A DNA MER2_type 1 366 0 307 113 19 0 chrX 113995022 113995075 -48604855 + L1MA9 LINE L1 6254 6307 -5 575 138 11 0 chrX 113995103 113995197 -48604733 - MER53 DNA DNA 0 189 95 357 307 58 42 chrX 113995614 113995803 -48604127 - MER117 DNA MER1_type -4 193 2 383 318 205 0 chrX 113995809 113995960 -48603970 + MER91A DNA MER1_type 15 196 0 1687 180 0 7 chrX 113996148 113996432 -48603498 + AluJb SINE Alu 1 282 -30 441 0 0 0 chrX 113996435 113996484 -48603446 + (TA)n Simple_repeat Simple_repeat 2 50 0 312 27 0 0 chrX 113996483 113996520 -48603410 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 186 43 0 0 chrX 113996522 113996545 -48603385 + (TG)n Simple_repeat Simple_repeat 2 24 0 203 184 41 61 chrX 113996686 113996735 -48603195 + MER5B DNA MER1_type 128 175 -3 198 0 0 0 chrX 113997244 113997266 -48602664 + (A)n Simple_repeat Simple_repeat 1 22 0 1708 172 48 3 chrX 113997563 113997854 -48602076 + AluJo SINE Alu 1 304 -8 22 0 0 0 chrX 113998314 113998336 -48601594 + AT_rich Low_complexity Low_complexity 1 22 0 227 285 86 60 chrX 113998391 113998542 -48601388 - L3 LINE CR1 -1214 363 209 223 375 0 0 chrX 113998716 113998812 -48601118 + MIR SINE MIR 166 261 -1 187 394 0 0 chrX 113999101 113999172 -48600758 - MIR SINE MIR -93 115 45 799 181 8 8 chrX 113999294 113999427 -48600503 + AluJb SINE Alu 1 133 -179 32 0 0 0 chrX 113999428 113999460 -48600470 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chrX 113999953 113999984 -48599946 + AT_rich Low_complexity Low_complexity 1 31 0 920 129 0 0 chrX 114000125 114000257 -48599673 + AluSq/x SINE Alu 1 132 -181 634 155 16 78 chrX 114000257 114000386 -48599544 + AluJb SINE Alu 91 211 -101 333 0 0 0 chrX 114000438 114000475 -48599455 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chrX 114000686 114000712 -48599218 + AT_rich Low_complexity Low_complexity 1 26 0 2207 136 0 0 chrX 114000756 114001066 -48598864 + AluSx SINE Alu 1 310 -2 1655 163 6 66 chrX 114001458 114001777 -48598153 - AluSx SINE Alu -12 300 1 24 32 0 0 chrX 114001922 114001953 -48597977 + AT_rich Low_complexity Low_complexity 1 31 0 419 267 41 14 chrX 114002165 114002311 -48597619 - MIR3 SINE MIR -41 167 18 987 126 0 15 chrX 114002330 114002493 -48597437 + FLAM_C SINE Alu 1 161 0 1975 124 0 0 chrX 114002674 114002941 -48596989 + AluSx SINE Alu 1 267 -45 1107 225 49 62 chrX 114002942 114003155 -48596775 - L1M4 LINE L1 -1870 4276 4067 1038 107 6 24 chrX 114003155 114003323 -48596607 - L1MA4A LINE L1 -2 6301 6137 1107 225 49 62 chrX 114003323 114003433 -48596497 - L1M4 LINE L1 -2079 4067 3957 1427 205 7 43 chrX 114003584 114003887 -48596043 - AluJo SINE Alu -20 292 1 23 33 0 0 chrX 114004031 114004061 -48595869 + AT_rich Low_complexity Low_complexity 1 30 0 1087 152 0 0 chrX 114004204 114004362 -48595568 + FRAM SINE Alu 1 156 -20 902 154 0 0 chrX 114004378 114004508 -48595422 - FLAM_C SINE Alu -3 130 1 545 141 37 44 chrX 114005056 114005191 -48594739 + MER53 DNA DNA 49 182 -7 * 623 77 0 22 chrX 114005115 114005206 -48594724 - MER53 DNA DNA -99 90 2 723 179 14 14 chrX 114006348 114006488 -48593442 - FLAM_C SINE Alu -1 142 3 185 62 0 31 chrX 114006505 114006537 -48593393 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1400 156 121 4 chrX 114006579 114006678 -48593252 + AluJo SINE Alu 1 87 -225 351 0 0 0 chrX 114006678 114006717 -48593213 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1400 156 121 4 chrX 114006717 114006873 -48593057 + AluJo SINE Alu 87 286 -26 339 65 0 0 chrX 114006873 114006919 -48593011 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 279 0 0 0 chrX 114006962 114006993 -48592937 + (TG)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chrX 114007203 114007233 -48592697 + AT_rich Low_complexity Low_complexity 1 30 0 196 273 15 0 chrX 114007831 114007897 -48592033 - MIR SINE MIR -25 237 171 184 319 94 14 chrX 114007946 114008084 -48591846 - MIR SINE MIR -66 196 48 441 0 0 0 chrX 114008541 114008590 -48591340 + (CACAT)n Simple_repeat Simple_repeat 5 53 0 1488 167 56 21 chrX 114009186 114009474 -48590456 - AluJb SINE Alu -6 306 9 1001 173 17 0 chrX 114009675 114009848 -48590082 - AluJb SINE Alu 0 312 137 764 260 6 6 chrX 114009930 114010107 -48589823 - MER5A DNA MER1_type -6 183 7 313 258 52 52 chrX 114010552 114010707 -48589223 + L1ME4a LINE L1 5126 5280 -866 1252 161 92 12 chrX 114010943 114011112 -48588818 - AluJb SINE Alu 0 312 113 455 0 18 0 chrX 114011112 114011167 -48588763 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1252 161 92 12 chrX 114011167 114011277 -48588653 - AluJb SINE Alu -199 113 13 2113 88 0 41 chrX 114011426 114011748 -48588182 - AluSx SINE Alu 0 310 1 420 225 81 72 chrX 114011752 114011988 -48587942 + L1ME4a LINE L1 5709 5946 -175 306 165 55 55 chrX 114012030 114012121 -48587809 + L1ME4a LINE L1 6027 6117 -4 1833 144 7 27 chrX 114013501 114013800 -48586130 + AluJb SINE Alu 5 297 -15 345 311 80 40 chrX 114013903 114014054 -48585876 - L2 LINE L2 -1 3271 3115 702 125 78 55 chrX 114014105 114014233 -48585697 + AluJb SINE Alu 163 293 -19 2187 178 91 30 chrX 114014312 114014774 -48585156 - LTR2B LTR ERV1 0 490 1 24813 57 5 7 chrX 114014774 114018979 -48580951 - Harlequin LTR ERV1 0 6896 2644 1851 57 0 13 chrX 114018979 114019207 -48580723 + AluY SINE Alu 72 296 -15 24813 57 5 7 chrX 114019207 114020043 -48579887 - Harlequin LTR ERV1 -4252 2644 1808 8848 58 12 16 chrX 114020035 114021188 -48578742 - Harlequin LTR ERV1 -5485 1411 263 * 1401 99 5 0 chrX 114021188 114021389 -48578541 - Harlequin LTR ERV1 -6432 464 263 * 2702 112 2 15 chrX 114021369 114021771 -48578159 - Harlequin LTR ERV1 -6497 399 3 2038 192 96 28 chrX 114021773 114022232 -48577698 - LTR2B LTR ERV1 0 490 1 254 324 72 36 chrX 114022329 114022468 -48577462 - L2 LINE L2 -184 3088 2945 379 232 45 136 chrX 114022497 114022717 -48577213 - MIR SINE MIR -27 235 36 2017 148 0 3 chrX 114023491 114023789 -48576141 + AluSx SINE Alu 1 297 -15 521 228 11 11 chrX 114023789 114023969 -48575961 + GA-rich Low_complexity Low_complexity 1 180 0 1625 157 4 8 chrX 114023970 114024238 -48575692 - AluJo SINE Alu -35 277 11 30 0 0 0 chrX 114024475 114024505 -48575425 + AT_rich Low_complexity Low_complexity 1 30 0 324 0 0 0 chrX 114024736 114024772 -48575158 + (A)n Simple_repeat Simple_repeat 1 36 0 26 0 0 0 chrX 114024807 114024833 -48575097 + AT_rich Low_complexity Low_complexity 1 26 0 290 317 89 10 chrX 114026014 114026115 -48573815 + MIR3 SINE MIR 94 202 -6 951 142 0 0 chrX 114026365 114026499 -48573431 + AluSq/x SINE Alu 1 134 -178 2247 116 0 0 chrX 114026506 114026799 -48573131 + AluSx SINE Alu 3 295 -17 482 179 0 0 chrX 114026876 114026954 -48572976 - MLT1A1 LTR MaLR -287 78 1 511 284 74 16 chrX 114027167 114027357 -48572573 + MIR SINE MIR 58 258 -4 253 272 99 12 chrX 114027637 114027718 -48572212 + MER58A DNA MER1_type 1 88 -19 1900 81 97 8 chrX 114027719 114028004 -48571926 - AluSc SINE Alu 0 308 1 1130 121 0 11 chrX 114028007 114028181 -48571749 - AluSg/x SINE Alu -7 305 134 1984 139 0 37 chrX 114028181 114028505 -48571425 - AluSx SINE Alu 0 312 1 2218 109 3 0 chrX 114028506 114028808 -48571122 - AluSx SINE Alu -9 303 1 680 215 15 0 chrX 114028809 114028939 -48570991 + MER58A DNA MER1_type 93 224 0 1871 199 51 29 chrX 114029756 114030168 -48569762 + MER57B LTR ERV1 1 421 -13 1885 126 19 40 chrX 114030171 114030496 -48569434 - L1MB8 LINE L1 -19 6159 5842 225 65 0 0 chrX 114030618 114030649 -48569281 + (TC)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chrX 114030649 114030669 -48569261 + (CA)n Simple_repeat Simple_repeat 1 20 0 1899 106 50 26 chrX 114031152 114031454 -48568476 + AluSx SINE Alu 1 309 -3 513 231 24 6 chrX 114031554 114031619 -48568311 + CT-rich Low_complexity Low_complexity 1 63 -109 1532 82 0 0 chrX 114031619 114031815 -48568115 - L1PA5 LINE L1 0 6154 5959 513 231 24 6 chrX 114031815 114031918 -48568012 + CT-rich Low_complexity Low_complexity 63 172 0 1785 162 3 10 chrX 114031918 114032208 -48567722 - AluJb SINE Alu -11 301 14 2016 176 27 5 chrX 114032429 114032459 -48567471 + MER57A LTR ERV1 26 54 -349 1766 151 17 7 chrX 114032459 114032750 -48567180 + AluJb SINE Alu 1 294 -18 2016 176 27 5 chrX 114032750 114033089 -48566841 + MER57A LTR ERV1 54 403 0 25 31 0 0 chrX 114033535 114033567 -48566363 + AT_rich Low_complexity Low_complexity 1 32 0 309 68 0 0 chrX 114034314 114034358 -48565572 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 2113 134 0 0 chrX 114034382 114034681 -48565249 + AluSq SINE Alu 1 299 -14 317 172 52 0 chrX 114035149 114035207 -48564723 - L2 LINE L2 -3 3269 3209 21 0 0 0 chrX 114035766 114035787 -48564143 + AT_rich Low_complexity Low_complexity 1 21 0 805 129 8 16 chrX 114035787 114035911 -48564019 - FLAM_C SINE Alu -18 125 3 24 32 0 0 chrX 114038603 114038634 -48561296 + GC_rich Low_complexity Low_complexity 1 31 0 248 328 0 0 chrX 114042007 114042074 -48557856 + MIR SINE MIR 40 106 -102 204 234 125 0 chrX 114042216 114042280 -48557650 - L3 LINE CR1 -716 861 790 240 35 0 0 chrX 114042939 114042968 -48556962 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2096 40 44 15 chrX 114042970 114043242 -48556688 - AluY SINE Alu -31 280 1 189 0 0 0 chrX 114043243 114043264 -48556666 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 2227 83 4 0 chrX 114043264 114043542 -48556388 - AluSg SINE Alu -31 279 1 1838 139 24 7 chrX 114043880 114044204 -48555726 + AluSx SINE Alu 1 312 0 262 65 0 0 chrX 114044275 114044321 -48555609 - Alu SINE Alu 0 302 257 347 283 98 5 chrX 114044989 114045194 -48554736 - L1ME4a LINE L1 -227 5894 5671 2343 115 0 6 chrX 114045317 114045631 -48554299 + AluSx SINE Alu 1 312 0 2166 126 0 0 chrX 114046490 114046792 -48553138 - AluSg SINE Alu -6 304 3 453 280 109 11 chrX 114046793 114046968 -48552962 + MIR SINE MIR 61 252 -10 1397 110 4 48 chrX 114047063 114047290 -48552640 - AluJb SINE Alu -11 301 85 2359 85 7 0 chrX 114047447 114047752 -48552178 - AluY SINE Alu -4 307 1 1865 175 10 0 chrX 114047795 114048104 -48551826 + AluSx SINE Alu 1 312 0 845 163 0 41 chrX 114048765 114048912 -48551018 + FLAM_C SINE Alu 1 141 -2 2274 110 3 0 chrX 114049370 114049680 -48550250 + AluSq SINE Alu 1 311 -2 2058 140 3 3 chrX 114050262 114050562 -48549368 - AluSx SINE Alu -12 300 1 1846 183 56 14 chrX 114051116 114051142 -48548788 - L1MB8 LINE L1 -9 6169 6146 2482 68 3 0 chrX 114051142 114051437 -48548493 - AluSp SINE Alu -17 296 1 1846 183 56 14 chrX 114051437 114051853 -48548077 - L1MB8 LINE L1 -32 6146 5708 2542 56 0 0 chrX 114051996 114052301 -48547629 - AluY SINE Alu -6 305 1 1645 150 103 7 chrX 114052845 114053118 -48546812 + AluJo SINE Alu 1 299 -13 2005 136 0 7 chrX 114054040 114054335 -48545595 - AluSx SINE Alu -19 293 1 1031 266 57 24 chrX 114054438 114054772 -48545158 - L2 LINE L2 0 3313 2969 2118 52 0 0 chrX 114055001 114055249 -48544681 + AluY SINE Alu 1 248 -63 207 0 0 0 chrX 114055249 114055272 -48544658 + (A)n Simple_repeat Simple_repeat 1 23 0 4943 193 41 24 chrX 114055384 114056293 -48543637 - L1MD1 LINE L1 0 6242 5272 1653 170 50 0 chrX 114056293 114056576 -48543354 - AluJo SINE Alu -15 297 1 4943 193 41 24 chrX 114056576 114057280 -48542650 - L1MD1 LINE L1 -970 5272 4581 963 116 0 20 chrX 114057447 114057593 -48542337 - FLAM_C SINE Alu 0 143 1 1588 160 14 14 chrX 114059315 114059621 -48540309 + AluJb SINE Alu 1 306 0 598 214 0 17 chrX 114060808 114060925 -48539005 - L2 LINE L2 0 3313 3199 2184 118 0 3 chrX 114061942 114062247 -48537683 - AluSg SINE Alu -6 304 1 2288 68 14 0 chrX 114062550 114062842 -48537088 - AluSp SINE Alu -17 296 1 21 0 0 0 chrX 114062914 114062935 -48536995 + AT_rich Low_complexity Low_complexity 1 21 0 2053 109 3 33 chrX 114062946 114063250 -48536680 + AluSg SINE Alu 1 295 -15 5345 187 70 29 chrX 114063595 114064009 -48535921 + Charlie1a DNA MER1_type 66 461 -2300 2674 24 0 0 chrX 114064009 114064307 -48535623 + AluY SINE Alu 1 298 -13 5345 187 70 29 chrX 114064307 114065226 -48534704 + Charlie1a DNA MER1_type 461 1455 0 21 0 0 0 chrX 114065462 114065483 -48534447 + AT_rich Low_complexity Low_complexity 1 21 0 1535 134 90 14 chrX 114065550 114065827 -48534103 - AluJb SINE Alu -14 298 1 1921 111 25 0 chrX 114066432 114066711 -48533219 - AluSx SINE Alu -26 286 1 204 203 31 16 chrX 114066950 114067014 -48532916 + (CA)n Simple_repeat Simple_repeat 1 65 0 2363 83 0 13 chrX 114067095 114067409 -48532521 + AluSx SINE Alu 3 312 0 2422 57 0 7 chrX 114067411 114067708 -48532222 + AluY SINE Alu 1 295 -16 221 415 15 22 chrX 114068341 114068476 -48531454 - MIR3 SINE MIR -63 145 12 380 310 76 12 chrX 114068824 114068995 -48530935 - MIR SINE MIR 0 262 81 508 255 93 77 chrX 114069236 114069477 -48530453 - MIR SINE MIR -16 246 1 381 43 0 0 chrX 114071178 114071225 -48528705 + (TC)n Simple_repeat Simple_repeat 1 47 0 242 29 29 0 chrX 114071224 114071259 -48528671 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 397 179 85 150 chrX 114071978 114072224 -48527706 + L1MC5 LINE L1 7732 7961 0 1895 80 4 0 chrX 114072234 114072472 -48527458 - AluSg/x SINE Alu -1 309 71 268 306 216 0 chrX 114072884 114072995 -48526935 - L2 LINE L2 -1 3271 3137 1954 149 0 0 chrX 114073110 114073399 -48526531 + AluSx SINE Alu 1 289 -23 1887 89 0 0 chrX 114073418 114073655 -48526275 + AluSq SINE Alu 1 237 -76 451 139 0 14 chrX 114123655 114123727 -48476203 + FRAM SINE Alu 58 128 -48 2227 111 0 0 chrX 114123817 114124115 -48475815 - AluSx SINE Alu -14 298 1 910 147 17 34 chrX 114124325 114124502 -48475428 + FRAM SINE Alu 1 173 -3 365 247 22 22 chrX 114124573 114124662 -48475268 + L2 LINE L2 3184 3272 0 1488 192 59 21 chrX 114124762 114125049 -48474881 - AluJb SINE Alu -14 298 1 1986 130 10 0 chrX 114125189 114125481 -48474449 - AluSx SINE Alu -17 295 1 1869 158 0 7 chrX 114125486 114125804 -48474126 - AluJo SINE Alu 0 316 1 318 309 151 13 chrX 114126179 114126331 -48473599 - MIR SINE MIR -70 192 20 228 254 18 0 chrX 114127265 114127320 -48472610 - MIR SINE MIR -120 142 87 420 109 0 0 chrX 114127406 114127461 -48472469 - Alu SINE Alu -20 292 238 1752 96 0 4 chrX 114127462 114127692 -48472238 + AluSg/x SINE Alu 84 312 0 1718 117 6 102 chrX 114127721 114128054 -48471876 + AluSg1 SINE Alu 3 303 -6 2633 44 0 0 chrX 114128217 114128515 -48471415 - AluY SINE Alu -11 300 3 204 40 0 0 chrX 114129951 114129976 -48469954 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1828 155 0 14 chrX 114129976 114130123 -48469807 - AluJb SINE Alu -32 280 137 2290 108 0 0 chrX 114130123 114130420 -48469510 - AluSg SINE Alu -13 297 1 1828 155 0 14 chrX 114130420 114130556 -48469374 - AluJb SINE Alu -175 137 1 29 0 0 0 chrX 114130691 114130720 -48469210 + AT_rich Low_complexity Low_complexity 1 29 0 2488 66 0 7 chrX 114130720 114131025 -48468905 - AluY SINE Alu -8 303 1 232 369 38 13 chrX 114131377 114131534 -48468396 + MER5A DNA MER1_type 28 188 -1 223 310 35 35 chrX 114132990 114133077 -48466853 + MIR SINE MIR 60 146 -116 2354 95 3 0 chrX 114133228 114133533 -48466397 - AluSx SINE Alu -1 311 6 1077 98 0 0 chrX 114134057 114134190 -48465740 - FLAM_C SINE Alu 0 133 1 2373 97 0 3 chrX 114135700 114136008 -48463922 + AluSx SINE Alu 1 307 -5 2117 109 3 3 chrX 114136326 114136653 -48463277 + AluSq SINE Alu 1 327 0 28 29 0 0 chrX 114136834 114136869 -48463061 + AT_rich Low_complexity Low_complexity 1 35 0 849 156 0 52 chrX 114137375 114137529 -48462401 + FRAM SINE Alu 1 40 0 410 291 123 48 chrX 114137569 114137926 -48462004 + L2 LINE L2 2927 3310 -3 2408 70 3 3 chrX 114139172 114139470 -48460460 + AluY SINE Alu 1 298 -13 523 269 116 5 chrX 114140063 114140279 -48459651 + MIR SINE MIR 20 259 -3 238 155 69 0 chrX 114140739 114140797 -48459133 + L1M4 LINE L1 5221 5282 -864 982 178 38 38 chrX 114143012 114143225 -48456705 - MER20 DNA MER1_type -6 213 1 682 205 0 0 chrX 114143897 114144014 -48455916 + FLAM_C SINE Alu 2 118 -15 1200 221 21 36 chrX 114144045 114144168 -48455762 + AluJb SINE Alu 18 141 -171 1944 123 10 23 chrX 114144168 114144469 -48455461 + AluSq SINE Alu 1 297 -16 1200 221 21 36 chrX 114144469 114144626 -48455304 + AluJb SINE Alu 141 294 -18 1153 239 134 19 chrX 114144629 114145371 -48454559 - L1MDa LINE L1 -2158 4382 3468 1922 228 45 63 chrX 114145432 114145464 -48454466 - L1MDa LINE L1 -3621 2919 2888 1894 138 19 22 chrX 114145464 114145775 -48454155 - AluSx SINE Alu -2 310 1 1922 228 45 63 chrX 114145775 114146082 -48453848 - L1MDa LINE L1 -3652 2888 2577 2283 104 3 7 chrX 114146082 114146389 -48453541 - AluSq SINE Alu -7 306 1 1673 89 181 4 chrX 114146394 114146653 -48453277 - AluSg1 SINE Alu -4 305 1 1922 228 45 63 chrX 114146653 114146874 -48453056 - L1MDa LINE L1 -3967 2573 2350 1702 144 6 73 chrX 114146874 114147201 -48452729 - AluJb SINE Alu -7 305 1 1922 228 45 63 chrX 114147201 114147656 -48452274 - L1MDa LINE L1 -4190 2350 1917 180 111 0 0 chrX 114147893 114147920 -48452010 + (CA)n Simple_repeat Simple_repeat 2 28 0 377 228 12 94 chrX 114148215 114148302 -48451628 + L2 LINE L2 1709 1777 -1537 2354 97 0 13 chrX 114148302 114148612 -48451318 - AluSx SINE Alu -6 306 1 377 228 12 94 chrX 114148612 114148695 -48451235 + L2 LINE L2 1777 1865 -1449 715 215 70 107 chrX 114148824 114148990 -48450940 + L1ME3A LINE L1 3117 3288 -2858 1431 208 24 10 chrX 114148990 114149278 -48450652 + AluJo SINE Alu 1 292 -20 715 215 70 107 chrX 114149278 114149368 -48450562 + L1ME3A LINE L1 3288 3380 -2766 2146 130 0 0 chrX 114149368 114149667 -48450263 + AluSx SINE Alu 1 299 -13 715 215 70 107 chrX 114149667 114149874 -48450056 + L1ME3A LINE L1 3380 3593 -2553 2162 111 7 0 chrX 114149874 114150154 -48449776 + AluSx SINE Alu 1 282 -30 216 0 0 0 chrX 114150159 114150183 -48449747 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 715 215 70 107 chrX 114150183 114150423 -48449507 + L1ME3A LINE L1 3597 3802 -2344 1075 294 89 45 chrX 114150469 114150963 -48448967 + REP3 LTR ERV 3 518 -44 1983 156 0 0 chrX 114151048 114151350 -48448580 + AluJo SINE Alu 3 304 -8 2586 71 0 0 chrX 114151350 114151658 -48448272 + AluSg SINE Alu 1 308 -2 350 246 42 67 chrX 114152645 114152774 -48447156 + L1ME3A LINE L1 5040 5162 -984 2467 61 0 3 chrX 114152774 114153071 -48446859 - AluY SINE Alu -15 296 1 350 246 42 67 chrX 114153071 114153181 -48446749 + L1ME3A LINE L1 5162 5273 -873 2132 102 14 17 chrX 114153183 114153477 -48446453 + AluSx SINE Alu 1 293 -19 1101 203 46 0 chrX 114153506 114153545 -48446385 + AluJb SINE Alu 85 121 -191 189 0 0 0 chrX 114153545 114153566 -48446364 + (TA)n Simple_repeat Simple_repeat 1 21 0 1101 203 46 0 chrX 114153566 114153743 -48446187 + AluJb SINE Alu 121 311 -1 2383 102 0 9 chrX 114153785 114154100 -48445830 + AluSx SINE Alu 1 312 0 1292 231 60 74 chrX 114154135 114154219 -48445711 + L1ME3A LINE L1 5379 5463 -707 2589 66 3 0 chrX 114154219 114154524 -48445406 + AluSp SINE Alu 1 306 -7 1292 231 60 74 chrX 114154524 114154683 -48445247 + L1ME3A LINE L1 5463 5623 -547 2217 117 0 22 chrX 114154683 114155000 -48444930 + AluSg SINE Alu 1 310 0 1292 231 60 74 chrX 114155000 114155270 -48444660 + L1ME3A LINE L1 5623 5887 -283 2220 114 0 7 chrX 114155270 114155569 -48444361 + AluSx SINE Alu 1 297 -15 1292 231 60 74 chrX 114155569 114155634 -48444296 + L1ME3A LINE L1 5887 5951 -219 644 210 0 51 chrX 114155801 114155939 -48443991 - FLAM_A SINE Alu -1 132 2 282 135 0 6 chrX 114155965 114156017 -48443913 + AluJb SINE Alu 1 37 -265 2027 128 3 24 chrX 114156017 114156315 -48443615 - AluSx SINE Alu -14 298 7 1854 132 0 4 chrX 114156323 114156625 -48443305 + AluJb SINE Alu 27 327 0 27 0 0 0 chrX 114156661 114156688 -48443242 + AT_rich Low_complexity Low_complexity 1 27 0 1560 189 40 7 chrX 114158383 114158684 -48441246 + AluJo SINE Alu 1 311 -1 2497 67 3 0 chrX 114158886 114159185 -48440745 - AluY SINE Alu -10 301 2 2158 112 0 10 chrX 114159456 114159750 -48440180 - AluSg SINE Alu -18 292 2 21 57 0 0 chrX 114159750 114159785 -48440145 + AT_rich Low_complexity Low_complexity 1 35 0 2010 112 6 86 chrX 114159944 114160283 -48439647 - AluSx SINE Alu 0 312 1 1494 184 122 0 chrX 114160383 114160687 -48439243 - MSTD LTR MaLR -55 341 1 221 56 0 28 chrX 114160714 114160750 -48439180 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 14694 22 3 0 chrX 114160750 114163192 -48436738 - L1PA3 LINE L1 -24 6131 3682 1801 123 0 0 chrX 114163230 114163473 -48436457 + AluSc SINE Alu 1 243 -66 2421 74 13 0 chrX 114163474 114163773 -48436157 + AluSp SINE Alu 1 303 -10 533 78 0 0 chrX 114163773 114163877 -48436053 + AluSc SINE Alu 236 339 0 12160 127 4 34 chrX 114164201 114165457 -48434473 + L1P LINE L1 630 1806 -4340 2186 120 3 0 chrX 114165457 114165758 -48434172 - AluSp SINE Alu -11 302 1 12160 127 4 34 chrX 114165758 114166524 -48433406 + L1P LINE L1 1806 2593 -3553 2047 106 0 43 chrX 114167103 114167406 -48432524 - AluSc SINE Alu -19 290 1 818 176 12 42 chrX 114167445 114167610 -48432320 + MLT1A2 LTR MaLR 1 160 -214 254 104 0 21 chrX 114167622 114167670 -48432260 + (TC)n Simple_repeat Simple_repeat 2 48 0 722 176 30 0 chrX 114167752 114167883 -48432047 - AluJo SINE Alu -176 136 2 688 152 36 9 chrX 114167886 114167998 -48431932 + MLT1A2 LTR MaLR 260 374 0 2190 112 6 13 chrX 114168025 114168338 -48431592 + AluSx SINE Alu 1 311 -1 2139 132 3 0 chrX 114168720 114169023 -48430907 + AluSx SINE Alu 5 308 -4 290 262 0 36 chrX 114169426 114169510 -48430420 + L1ME4a LINE L1 5960 6040 -81 30 0 0 0 chrX 114169511 114169541 -48430389 + AT_rich Low_complexity Low_complexity 1 30 0 1912 178 0 0 chrX 114169542 114169835 -48430095 + AluJo SINE Alu 1 293 -19 2548 65 0 3 chrX 114169837 114170147 -48429783 + AluY SINE Alu 1 309 -2 1693 177 17 23 chrX 114170507 114170807 -48429123 + AluJo SINE Alu 1 298 -14 1415 176 39 4 chrX 114171473 114171729 -48428201 + MER90 LTR ERV1 1 265 -310 2501 20 40 20 chrX 114171928 114172229 -48427701 - AluY SINE Alu -4 307 1 1355 180 34 102 chrX 114172289 114172501 -48427429 + MLT1A2 LTR MaLR 5 230 -144 2330 53 42 3 chrX 114172501 114172786 -48427144 + AluY SINE Alu 1 296 -15 1355 180 34 102 chrX 114172786 114172844 -48427086 + MLT1A2 LTR MaLR 230 290 -84 1670 161 0 25 chrX 114172844 114173124 -48426806 + AluJb SINE Alu 9 281 -31 1355 180 34 102 chrX 114173124 114173236 -48426694 + MLT1A2 LTR MaLR 290 362 -12 2152 125 3 6 chrX 114173426 114173737 -48426193 + AluSx SINE Alu 1 310 -2 1632 79 22 13 chrX 114173851 114174079 -48425851 + MER30 DNA MER1_type 1 230 0 664 245 75 33 chrX 114174237 114174449 -48425481 + MER74B LTR ERVL 55 275 -347 2501 69 3 3 chrX 114174449 114174754 -48425176 - AluSp SINE Alu -8 305 1 807 199 65 96 chrX 114174779 114175135 -48424795 - MER41C LTR ERV1 0 554 210 1981 140 7 0 chrX 114175135 114175420 -48424510 + AluSx SINE Alu 1 287 -25 22 0 0 0 chrX 114175428 114175450 -48424480 + AT_rich Low_complexity Low_complexity 1 22 0 734 243 43 48 chrX 114175465 114175671 -48424259 - MER41C LTR ERV1 -340 214 15 2912 9 0 19 chrX 114175671 114175995 -48423935 - AluYb8 SINE Alu 0 318 1 734 243 43 48 chrX 114175995 114176010 -48423920 - MER41C LTR ERV1 -539 15 1 * 893 221 30 46 chrX 114176010 114176269 -48423661 + MER74B LTR ERVL 291 545 -77 341 269 103 19 chrX 114176131 114176287 -48423643 - MER88 LTR ERVL -219 245 77 * 989 179 0 18 chrX 114176323 114176491 -48423439 + AluJo SINE Alu 125 289 -23 285 303 112 44 chrX 114176730 114177024 -48422906 + MER110-int LTR ERV1 1893 2206 -2441 1048 305 22 63 chrX 114177176 114177622 -48422308 + MER110-int LTR ERV1 2342 2766 -1881 2143 101 42 0 chrX 114177622 114177909 -48422021 + AluSx SINE Alu 2 300 -12 1048 305 22 63 chrX 114177909 114177970 -48421960 + MER110-int LTR ERV1 2766 2828 -1819 189 0 0 0 chrX 114177975 114177996 -48421934 + (TG)n Simple_repeat Simple_repeat 2 22 0 1218 87 12 0 chrX 114177996 114178157 -48421773 - AluSp SINE Alu -14 299 137 308 196 0 152 chrX 114178200 114178312 -48421618 + MER110-int LTR ERV1 2847 2941 -1706 2247 111 7 3 chrX 114178644 114178950 -48420980 + AluSq SINE Alu 2 308 -5 1066 118 39 208 chrX 114179788 114180144 -48419786 - MER34C LTR ERV1 -289 296 1 2323 99 3 10 chrX 114180145 114180457 -48419473 - AluSx SINE Alu -2 310 1 1624 174 7 18 chrX 114180460 114180742 -48419188 - AluJo SINE Alu -19 293 15 2235 193 73 34 chrX 114180992 114181227 -48418703 + MER90 LTR ERV1 58 283 -331 1784 149 7 42 chrX 114181227 114181401 -48418529 - AluJo SINE Alu -14 298 138 2422 97 0 0 chrX 114181401 114181710 -48418220 - AluSx SINE Alu -3 309 1 1784 149 7 42 chrX 114181710 114181844 -48418086 - AluJo SINE Alu -174 138 1 2235 193 73 34 chrX 114181844 114182131 -48417799 + MER90 LTR ERV1 283 600 -14 2517 88 3 0 chrX 114183511 114183819 -48416111 + AluSx SINE Alu 1 309 -3 352 145 94 188 chrX 114183944 114183981 -48415949 + MSTC LTR MaLR 3 42 -386 2241 111 0 7 chrX 114183981 114184279 -48415651 - AluSq SINE Alu -17 296 1 2169 139 3 0 chrX 114184281 114184591 -48415339 - AluSx SINE Alu -1 311 1 352 145 94 188 chrX 114184591 114184639 -48415291 + MSTC LTR MaLR 43 76 -352 2312 109 7 0 chrX 114184639 114184932 -48414998 + AluSx SINE Alu 2 296 -16 352 145 94 188 chrX 114184932 114184980 -48414950 + MSTC LTR MaLR 76 127 -301 1984 171 0 22 chrX 114184983 114185160 -48414770 - LTR32 LTR ERVL -4 467 300 2972 98 4 63 chrX 114185160 114185330 -48414600 - MER4C LTR ERV1 0 465 287 1661 113 129 12 chrX 114185330 114185586 -48414344 + AluSg1 SINE Alu 1 286 -23 2972 98 4 63 chrX 114185586 114185907 -48414023 - MER4C LTR ERV1 -178 287 3 1984 171 0 22 chrX 114185907 114186085 -48413845 - LTR32 LTR ERVL -171 300 120 2515 159 0 58 chrX 114186440 114186635 -48413295 - LTR32 LTR ERVL 0 471 266 2415 62 0 7 chrX 114186635 114186925 -48413005 - AluSc SINE Alu -21 288 1 2515 159 0 58 chrX 114186925 114187214 -48412716 - LTR32 LTR ERVL -205 266 15 2283 108 6 10 chrX 114188462 114188776 -48411154 - AluSq SINE Alu 0 313 1 269 348 55 30 chrX 114189091 114189292 -48410638 + L1M4b LINE L1 544 749 -6110 718 199 85 0 chrX 114189292 114189469 -48410461 - AluJb SINE Alu 0 318 130 2429 79 7 20 chrX 114189636 114189941 -48409989 + AluSq SINE Alu 1 301 -12 230 259 17 0 chrX 114190185 114190243 -48409687 + L1ME LINE L1 5753 5811 -353 321 336 9 35 chrX 114190453 114190566 -48409364 - L1MC4 LINE L1 -1321 6721 6612 307 225 14 106 chrX 114190570 114190712 -48409218 + L1MC4 LINE L1 6595 6723 -1319 302 76 0 76 chrX 114190712 114190804 -48409126 + (TA)n Simple_repeat Simple_repeat 2 86 0 320 204 10 82 chrX 114190807 114190905 -48409025 + L1MC4 LINE L1 6613 6703 -1339 308 182 20 111 chrX 114190845 114190944 -48408986 - L1MC4 LINE L1 -1339 6703 6614 * 454 104 0 77 chrX 114190962 114191145 -48408785 + (TA)n Simple_repeat Simple_repeat 2 170 0 316 226 26 70 chrX 114191149 114191264 -48408666 + L1MC4 LINE L1 6614 6723 -1319 311 189 56 56 chrX 114191197 114191287 -48408643 - L1MC4 LINE L1 -1339 6703 6614 * 317 222 17 77 chrX 114191281 114191398 -48408532 + L1MC4 LINE L1 6614 6723 -1319 307 196 21 93 chrX 114191385 114191482 -48408448 - L1MC4 LINE L1 -1339 6703 6614 * 308 221 11 63 chrX 114191426 114191521 -48408409 + L1MC4 LINE L1 6614 6703 -1339 309 71 0 71 chrX 114191526 114191611 -48408319 + (TA)n Simple_repeat Simple_repeat 2 80 0 331 200 29 73 chrX 114191615 114191754 -48408176 + L1MC4 LINE L1 6614 6723 -1319 635 65 0 65 chrX 114191754 114191909 -48408021 + (TA)n Simple_repeat Simple_repeat 2 146 0 353 186 64 68 chrX 114191917 114192240 -48407690 + L1MB8 LINE L1 5148 5471 -707 2444 103 0 0 chrX 114192240 114192551 -48407379 + AluSq SINE Alu 1 311 -2 353 186 64 68 chrX 114192551 114192900 -48407030 + L1MB8 LINE L1 5471 5820 -358 1562 172 31 14 chrX 114192900 114193191 -48406739 + AluJb SINE Alu 1 296 -16 2006 115 52 3 chrX 114193195 114193482 -48406448 + AluSx SINE Alu 1 301 -11 353 186 64 68 chrX 114193482 114193573 -48406357 + L1MB8 LINE L1 5823 6025 -153 2291 103 0 6 chrX 114193604 114193916 -48406014 + AluY SINE Alu 2 311 0 2709 178 26 12 chrX 114193928 114194433 -48405497 + MER21B LTR ERV1 21 532 -331 231 193 35 0 chrX 114194433 114194490 -48405440 + L1M4 LINE L1 3642 3700 -2446 1970 147 0 50 chrX 114194490 114194809 -48405121 + AluSx SINE Alu 1 303 -9 2303 116 0 0 chrX 114196236 114196596 -48403334 - AluSq SINE Alu 0 313 1 1489 137 9 9 chrX 114196670 114196897 -48403033 + AluJo SINE Alu 85 311 -1 1168 229 18 0 chrX 114196906 114197242 -48402688 + L1M4 LINE L1 3687 4028 -2118 2264 98 0 3 chrX 114197242 114197547 -48402383 + AluSx SINE Alu 1 304 -8 1014 112 11 17 chrX 114197649 114197828 -48402102 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 357 24 0 0 chrX 114197843 114197885 -48402045 + (TC)n Simple_repeat Simple_repeat 1 42 0 2115 115 3 37 chrX 114197885 114198095 -48401835 - AluSx SINE Alu 0 312 298 495 0 0 0 chrX 114198095 114198150 -48401780 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 2115 115 3 37 chrX 114198150 114198439 -48401491 - AluSx SINE Alu -14 298 1 2598 73 0 3 chrX 114198456 114198770 -48401160 - AluSp SINE Alu 0 313 1 1479 201 22 11 chrX 114198849 114199127 -48400803 + AluJb SINE Alu 1 281 -31 297 0 0 0 chrX 114199130 114199163 -48400767 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 1090 163 0 123 chrX 114199778 114200030 -48399900 + AluJb SINE Alu 82 302 -10 607 301 49 12 chrX 114200087 114200412 -48399518 + L1MA10 LINE L1 5660 5996 -172 * 1287 222 18 15 chrX 114200125 114200463 -48399467 + L1ME1 LINE L1 5704 6042 -124 1601 214 41 48 chrX 114200552 114200964 -48398966 + LTR2 LTR ERV1 41 449 0 528 203 16 16 chrX 114200964 114201092 -48398838 + L1ME1 LINE L1 6039 6166 0 * 1347 230 36 54 chrX 114201064 114201550 -48398380 + L1ME1 LINE L1 5636 6115 -63 2377 87 0 3 chrX 114201550 114201848 -48398082 + AluSp SINE Alu 1 297 -16 1347 230 36 54 chrX 114201848 114201910 -48398020 + L1ME1 LINE L1 6115 6177 -1 873 141 0 0 chrX 114201982 114202110 -48397820 - FLAM_C SINE Alu -5 128 1 438 265 7 7 chrX 114203071 114203222 -48396708 + L1MA10 LINE L1 6184 6334 0 333 296 127 48 chrX 114203224 114203413 -48396517 - L2 LINE L2 -420 2894 2691 2339 116 3 0 chrX 114203568 114203879 -48396051 + AluSx SINE Alu 1 312 0 255 274 33 4 chrX 114203896 114203963 -48395967 - MIR SINE MIR -61 147 86 786 179 0 0 chrX 114205347 114205464 -48394466 + FLAM_C SINE Alu 2 118 -25 195 42 0 0 chrX 114205468 114205492 -48394438 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 741 334 36 22 chrX 114206188 114206550 -48393380 + L2 LINE L2 2947 3313 0 2201 120 20 0 chrX 114206806 114207107 -48392823 - AluSg SINE Alu -1 309 3 1807 148 46 7 chrX 114207112 114207396 -48392534 - AluJb SINE Alu -17 295 1 2473 97 0 0 chrX 114207560 114207870 -48392060 - AluSx SINE Alu -2 310 1 430 181 0 0 chrX 114207888 114207971 -48391959 + AluJ/FRAM SINE Alu 226 308 -4 267 273 81 56 chrX 114208127 114208288 -48391642 - L1MC5 LINE L1 -246 7715 7559 1060 103 0 0 chrX 114208288 114208434 -48391496 + L1PA10 LINE L1 6016 6161 -7 2275 113 3 7 chrX 114208437 114208747 -48391183 + AluSx SINE Alu 1 309 -3 267 273 81 56 chrX 114208747 114209024 -48390906 - L1MC5 LINE L1 -403 7558 7262 2063 133 10 20 chrX 114209051 114209351 -48390579 - AluSx SINE Alu -15 297 1 2271 193 27 44 chrX 114209492 114209647 -48390283 - L1MB7 LINE L1 -17 6167 6011 2072 126 4 0 chrX 114209647 114209925 -48390005 - AluSp SINE Alu -34 279 1 2271 193 27 44 chrX 114209925 114210354 -48389576 - L1MB7 LINE L1 -173 6011 5593 192 40 0 0 chrX 114210579 114210604 -48389326 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2443 168 21 89 chrX 114211454 114211651 -48388279 - L1PB1 LINE L1 0 6151 5942 1974 124 0 40 chrX 114211651 114211950 -48387980 - AluSx SINE Alu -25 287 1 2443 168 21 89 chrX 114211950 114212135 -48387795 - L1PB1 LINE L1 -209 5942 5746 235 133 0 0 chrX 114212135 114212180 -48387750 - LTR66 LTR ERVL -172 438 394 2443 168 21 89 chrX 114212180 114212475 -48387455 - L1PB1 LINE L1 -405 5746 5518 2630 51 0 6 chrX 114212475 114212788 -48387142 - AluY SINE Alu 0 311 1 2443 168 21 89 chrX 114212788 114212907 -48387023 - L1PB1 LINE L1 -633 5518 5392 321 57 0 0 chrX 114212920 114212973 -48386957 - AluSp/q SINE Alu 0 303 251 262 215 103 65 chrX 114213006 114213113 -48386817 + MIR SINE MIR 20 130 -78 2540 63 7 0 chrX 114214070 114214372 -48385558 - AluSp SINE Alu -9 304 1 198 118 0 0 chrX 114215123 114215157 -48384773 + (TTTCC)n Simple_repeat Simple_repeat 4 37 0 1752 163 24 7 chrX 114215668 114215962 -48383968 + AluJb SINE Alu 1 299 -13 1974 134 0 3 chrX 114216037 114216328 -48383602 + AluSg SINE Alu 3 292 -18 1037 236 9 103 chrX 114216652 114216982 -48382948 - AluJb SINE Alu -3 299 1 363 113 0 0 chrX 114217238 114217300 -48382630 + (GA)n Simple_repeat Simple_repeat 1 62 0 513 71 0 0 chrX 114218623 114218693 -48381237 + (TC)n Simple_repeat Simple_repeat 1 70 0 387 0 0 0 chrX 114219293 114219336 -48380594 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 183 42 0 0 chrX 114219993 114220017 -48379913 + (CCGGG)n Simple_repeat Simple_repeat 4 27 0 414 85 0 0 chrX 114221593 114221652 -48378278 + (TC)n Simple_repeat Simple_repeat 2 60 0 315 0 0 0 chrX 114222255 114222290 -48377640 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chrX 114222947 114222972 -48376958 + GC_rich Low_complexity Low_complexity 1 25 0 414 85 0 0 chrX 114223314 114223373 -48376557 + (GA)n Simple_repeat Simple_repeat 2 60 0 273 29 0 0 chrX 114224948 114224982 -48374948 + (CCCGG)n Simple_repeat Simple_repeat 4 37 0 351 0 0 0 chrX 114225639 114225678 -48374252 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 414 85 0 0 chrX 114226282 114226341 -48373589 + (GA)n Simple_repeat Simple_repeat 2 60 0 25 0 0 0 chrX 114227940 114227965 -48371965 + GC_rich Low_complexity Low_complexity 1 25 0 571 234 18 24 chrX 114228458 114228625 -48371305 + AluSg SINE Alu 22 187 -123 273 29 0 0 chrX 114229016 114229050 -48370880 + (CCGGG)n Simple_repeat Simple_repeat 4 37 0 504 72 0 0 chrX 114229823 114229892 -48370038 + (GA)n Simple_repeat Simple_repeat 2 70 0 212 0 36 0 chrX 114230768 114230796 -48369134 + (CCCGG)n Simple_repeat Simple_repeat 4 32 0 4255 208 2 9 chrX 114433413 114434323 -48165607 - L1 LINE L1 -1699 4447 3544 287 290 32 11 chrX 114434744 114434837 -48165093 - L2 LINE L2 -36 3277 3183 406 326 93 5 chrX 114435031 114435246 -48164684 - MIR SINE MIR 0 262 29 598 227 21 46 chrX 114435273 114435373 -48164557 + L1ME LINE L1 5348 5442 -720 894 235 30 109 chrX 114435373 114435769 -48164161 + MLT1A1 LTR MaLR 1 365 0 598 227 21 46 chrX 114435769 114435862 -48164068 + L1ME LINE L1 5442 5536 -626 11843 180 19 7 chrX 114435891 114439445 -48160485 + L1MA1 LINE L1 2708 6302 0 22 35 0 0 chrX 114439445 114439474 -48160456 + AT_rich Low_complexity Low_complexity 1 29 0 699 283 54 10 chrX 114439533 114439830 -48160100 - L1ME4a LINE L1 -194 5927 5618 26 0 0 0 chrX 114439901 114439927 -48160003 + AT_rich Low_complexity Low_complexity 1 26 0 1484 198 21 26 chrX 114440210 114440589 -48159341 - L1MA9 LINE L1 0 6312 5936 28 48 0 0 chrX 114440686 114440728 -48159202 + AT_rich Low_complexity Low_complexity 1 42 0 6434 174 16 2 chrX 114440728 114442708 -48157222 - L1MA2 LINE L1 -3 7720 5711 11762 193 41 13 chrX 114442728 114445772 -48154158 - L1MA2 LINE L1 -3181 4384 1260 1651 226 0 0 chrX 114445770 114446115 -48153815 + L1PB1 LINE L1 3970 4314 -1832 * 5591 61 0 3 chrX 114446116 114446849 -48153081 - L1P LINE L1 -810 5336 4606 3459 54 0 2 chrX 114446849 114447274 -48152656 - L1P2 LINE L1 -385 5769 5346 3494 69 0 0 chrX 114447277 114447729 -48152201 + L1PA5 LINE L1 5700 6151 -3 5130 170 13 3 chrX 114447730 114447820 -48152110 + L1PB1 LINE L1 4307 4395 -1756 228 35 0 0 chrX 114447820 114447849 -48152081 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5130 170 13 3 chrX 114447849 114449444 -48150486 + L1PB1 LINE L1 4395 6011 -140 2163 121 36 3 chrX 114449451 114449781 -48150149 + MER9 LTR ERVK 34 374 -137 478 114 0 0 chrX 114449882 114449952 -48149978 - L1PB1 LINE L1 -288 5863 5794 960 152 0 0 chrX 114449953 114450118 -48149812 + (TA)n Simple_repeat Simple_repeat 2 166 0 3138 98 20 0 chrX 114450118 114450576 -48149354 + L1P5 LINE L1 5331 5797 -354 572 175 0 59 chrX 114450597 114450864 -48149066 + (TA)n Simple_repeat Simple_repeat 1 251 0 255 289 0 22 chrX 114450866 114450956 -48148974 + L1MC4 LINE L1 6616 6703 -1339 743 235 6 6 chrX 114450958 114451289 -48148641 + (TATATG)n Simple_repeat Simple_repeat 1 331 0 5943 213 18 4 chrX 114451331 114452687 -48147243 - L1 LINE L1 -2399 3747 2374 360 200 0 0 chrX 114452787 114452862 -48147068 + (TA)n Simple_repeat Simple_repeat 1 75 0 671 130 35 0 chrX 114452867 114452982 -48146948 + L1PB1 LINE L1 5783 5901 -250 254 255 0 0 chrX 114453028 114453079 -48146851 + (CATA)n Simple_repeat Simple_repeat 3 53 0 270 250 23 0 chrX 114453079 114453167 -48146763 - L1MC4 LINE L1 -1339 6703 6614 227 185 0 19 chrX 114453169 114453223 -48146707 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 716 148 31 0 chrX 114453224 114453352 -48146578 + L1PB1 LINE L1 5783 5914 -237 785 206 12 24 chrX 114454460 114454630 -48145300 + MER5B DNA MER1_type 5 172 -6 462 277 16 76 chrX 114454636 114454820 -48145110 - MIR SINE MIR -56 206 34 1187 95 6 0 chrX 114455115 114455284 -48144646 - L1PB1 LINE L1 0 6151 5982 7273 143 16 2 chrX 114455286 114456393 -48143537 + THE1B-int LTR MaLR 458 1580 0 579 111 0 0 chrX 114456393 114456474 -48143456 + THE1B LTR MaLR 1 81 -283 308 161 0 16 chrX 114456483 114456545 -48143385 - L1 LINE L1 -3171 4394 4334 5779 170 70 13 chrX 114456550 114457649 -48142281 + L1PB1 LINE L1 2 1163 -5700 8508 170 41 20 chrX 114457657 114460575 -48139355 + L1PB1 LINE L1 1431 4414 -2448 972 103 0 32 chrX 114460575 114460760 -48139170 + (GAA)n Simple_repeat Simple_repeat 1 179 0 8508 170 41 20 chrX 114460760 114460823 -48139107 + L1PB1 LINE L1 4414 4474 -2388 270 0 0 0 chrX 114463150 114463180 -48136750 + (TG)n Simple_repeat Simple_repeat 2 31 0 3248 72 4 20 chrX 114463184 114463639 -48136291 - LTR7 LTR ERV1 -2 448 1 5563 188 95 15 chrX 114464968 114467188 -48132742 + L1PB1 LINE L1 4455 6867 0 28 0 0 0 chrX 114467192 114467220 -48132710 + AT_rich Low_complexity Low_complexity 1 28 0 2734 221 77 21 chrX 114467220 114467883 -48132047 - L1 LINE L1 -3215 4350 3725 2143 125 3 0 chrX 114467883 114468195 -48131735 + AluSq SINE Alu 1 313 0 2734 221 77 21 chrX 114468195 114468335 -48131595 - L1 LINE L1 -3840 3725 3594 207 0 0 0 chrX 114468335 114468358 -48131572 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2734 221 77 21 chrX 114468358 114468477 -48131453 - L1 LINE L1 -3971 3594 3383 1653 208 6 0 chrX 114468456 114468822 -48131108 - L1 LINE L1 -3542 4023 3656 * 6406 156 26 32 chrX 114468817 114470572 -48129358 + L1MA1 LINE L1 4553 6296 -6 657 224 36 46 chrX 114470567 114470871 -48129059 + L1ME3A LINE L1 2895 3195 -2951 * 1782 232 18 42 chrX 114470990 114471042 -48128888 + L1M4 LINE L1 63 115 -6744 1620 196 0 30 chrX 114471042 114471343 -48128587 + AluJb SINE Alu 1 292 -20 1782 232 18 42 chrX 114471343 114471742 -48128188 + L1M4 LINE L1 115 503 -6356 2483 232 42 19 chrX 114471761 114472188 -48127742 + L1M4 LINE L1 5357 5773 -1184 1128 254 0 4 chrX 114472188 114472428 -48127502 - MER8 DNA MER2_type 0 239 1 2483 232 42 19 chrX 114472428 114472828 -48127102 + L1M4 LINE L1 5773 6203 -754 1861 212 66 15 chrX 114472821 114473582 -48126348 + L1M3 LINE L1 4909 5709 -459 * 2708 186 23 11 chrX 114473578 114474185 -48125745 + L1 LINE L1 4693 5306 -840 * 3758 232 27 6 chrX 114474182 114475319 -48124611 + L1MB8 LINE L1 5023 6173 -5 24 53 0 0 chrX 114475343 114475381 -48124549 + AT_rich Low_complexity Low_complexity 1 38 0 236 279 19 63 chrX 114475383 114475541 -48124389 + L1ME3A LINE L1 3337 3487 -2659 358 289 18 0 chrX 114475586 114475700 -48124230 + L1ME3A LINE L1 4696 4811 -1335 1997 215 91 9 chrX 114475700 114476161 -48123769 - MLT1D LTR MaLR -6 499 1 797 275 61 50 chrX 114476174 114476712 -48123218 + L1ME3A LINE L1 4840 5383 -763 * 10028 155 49 21 chrX 114476691 114478695 -48121235 + L1P3 LINE L1 10 2165 -4296 2081 79 86 4 chrX 114478695 114478973 -48120957 - AluY SINE Alu -10 301 1 10028 155 49 21 chrX 114478973 114479414 -48120516 + L1P3 LINE L1 2165 2592 -3869 6794 74 1 3 chrX 114479415 114481118 -48118812 + L1PA8 LINE L1 4457 6156 -16 1519 239 52 58 chrX 114481126 114481716 -48118214 + L1ME3A LINE L1 5668 6254 -231 253 364 11 0 chrX 114481991 114482079 -48117851 + L3 LINE CR1 1447 1535 -42 424 283 59 53 chrX 114482238 114482390 -48117540 + MIR SINE MIR 38 190 -72 359 258 75 20 chrX 114483170 114483520 -48116410 + L1M4 LINE L1 5043 5422 -740 2783 200 15 55 chrX 114483647 114484378 -48115552 - L1MB7 LINE L1 -7 6879 6178 1400 246 18 25 chrX 114484393 114484837 -48115093 - L1M4 LINE L1 -5124 1418 978 9197 214 22 5 chrX 114484838 114485869 -48114061 - L1MB7 LINE L1 -776 6072 5061 5500 116 11 0 chrX 114485869 114486997 -48112933 - L1PA14 LINE L1 -1 6160 5040 9197 214 22 5 chrX 114486997 114488165 -48111765 - L1MB7 LINE L1 -1787 5061 3834 507 151 0 0 chrX 114488165 114488238 -48111692 + AluJ/FRAM SINE Alu 219 291 -21 2577 261 32 6 chrX 114488238 114488897 -48111033 - L1MB7 LINE L1 -5064 1785 1110 2157 102 3 0 chrX 114490172 114490486 -48109444 + AluSx SINE Alu 1 315 0 417 340 51 6 chrX 114490589 114490745 -48109185 - MIR SINE MIR -97 165 3 25 51 0 0 chrX 114491013 114491052 -48108878 + AT_rich Low_complexity Low_complexity 1 39 0 457 217 0 22 chrX 114491299 114491391 -48108539 + MER2 DNA MER2_type 42 131 -214 12826 212 27 35 chrX 114491425 114495806 -48104124 - L1PA15 LINE L1 -6 6159 1827 4170 120 13 7 chrX 114495803 114496488 -48103442 - L1P LINE L1 -2961 3185 2497 * 3559 280 45 17 chrX 114496512 114497971 -48101959 + L1M4c LINE L1 1949 3492 -2890 1696 227 39 28 chrX 114497971 114498429 -48101501 - MLT1C LTR MaLR 0 467 5 3559 280 45 17 chrX 114498429 114499111 -48100819 + L1M4c LINE L1 3492 4154 -2228 783 120 14 42 chrX 114499178 114499320 -48100610 + MLT1C LTR MaLR 34 171 -296 858 274 42 10 chrX 114499326 114499633 -48100297 + L1M4c LINE L1 4195 4511 -1871 8228 87 11 0 chrX 114499633 114500734 -48099196 + L1P2 LINE L1 4 1116 -5030 * 30147 47 2 2 chrX 114500731 114504742 -48095188 + L1P2 LINE L1 1563 5574 -581 7571 27 0 0 chrX 114504842 114506089 -48093841 + L1PA3 LINE L1 4916 6162 0 498 168 134 8 chrX 114506092 114506221 -48093709 + L1MB7 LINE L1 6040 6176 -2 345 64 0 0 chrX 114506603 114506650 -48093280 - L1PA3 LINE L1 -3 6152 6106 252 0 0 0 chrX 114508262 114508290 -48091640 + (TG)n Simple_repeat Simple_repeat 2 29 0 421 318 14 20 chrX 114510223 114510371 -48089559 + MIR SINE MIR 5 151 -111 886 240 16 71 chrX 114510386 114510640 -48089290 - MIR SINE MIR -21 241 2 22 0 0 0 chrX 114514168 114514190 -48085740 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 114515669 114515690 -48084240 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chrX 114516196 114516226 -48083704 + AT_rich Low_complexity Low_complexity 1 30 0 280 268 219 0 chrX 114516609 114516732 -48083198 - MIR SINE MIR -1 261 112 26 0 0 0 chrX 114517992 114518018 -48081912 + AT_rich Low_complexity Low_complexity 1 26 0 1101 232 77 60 chrX 114519040 114519406 -48080524 + MLT1B LTR MaLR 3 374 -16 1806 139 82 6 chrX 114519406 114519736 -48080194 + THE1A LTR MaLR 1 355 0 11472 101 4 1 chrX 114519736 114521310 -48078620 + THE1A-int LTR MaLR 1 1580 0 1950 137 22 52 chrX 114521310 114521676 -48078254 + THE1A LTR MaLR 1 355 0 558 288 22 5 chrX 114521698 114521882 -48078048 + HERVL LTR ERVL 2 188 -5466 7424 267 31 33 chrX 114521910 114524807 -48075123 + L1MB3 LINE L1 14 2898 -3950 6993 39 9 2 chrX 114524807 114525669 -48074261 + L1PA5 LINE L1 5283 6150 -4 7424 267 31 33 chrX 114525669 114527206 -48072724 + L1MB3 LINE L1 2898 4436 -2412 5446 157 23 13 chrX 114527237 114527591 -48072339 - L1PB1 LINE L1 -5 7565 7216 309 26 0 0 chrX 114527591 114527629 -48072301 + (TG)n Simple_repeat Simple_repeat 2 39 0 5446 157 23 13 chrX 114527629 114527920 -48072010 - L1PB1 LINE L1 -354 7216 6930 340 30 76 0 chrX 114527920 114527986 -48071944 + (TA)n Simple_repeat Simple_repeat 2 72 0 5446 157 23 13 chrX 114527986 114528066 -48071864 - L1PB1 LINE L1 -640 6930 6852 2882 9 0 0 chrX 114528066 114528381 -48071549 - AluYb8 SINE Alu -3 315 1 5446 157 23 13 chrX 114528381 114529141 -48070789 - L1PB1 LINE L1 -718 6852 6062 1913 175 42 24 chrX 114529241 114530962 -48068968 - L1PB1 LINE L1 -4080 3485 1664 42472 52 3 1 chrX 114530962 114537099 -48062831 + L1PA4 LINE L1 1 6144 -11 3144 253 29 9 chrX 114537114 114538244 -48061686 + L1MB3 LINE L1 5060 6215 -667 2564 198 24 7 chrX 114538246 114538826 -48061104 + L1MB3 LINE L1 6295 6884 -1 1084 252 61 68 chrX 114538835 114539545 -48060385 + L1ME2 LINE L1 3854 4558 -1588 301 109 47 16 chrX 114539552 114539616 -48060314 + L1MB8 LINE L1 6112 6177 -1 794 227 64 44 chrX 114539673 114539968 -48059962 + L1ME2 LINE L1 5297 5597 -569 429 168 32 0 chrX 114539986 114540081 -48059849 - L1MA3 LINE L1 -7 6298 6201 5018 149 1 17 chrX 114540090 114541165 -48058765 - L1MA3 LINE L1 -254 6051 4994 9787 171 19 5 chrX 114541190 114544251 -48055679 - L1MA2 LINE L1 -1 7722 4618 8119 190 38 7 chrX 114544250 114545771 -48054159 - L1MA2 LINE L1 -4887 2678 1111 * 4523 221 32 16 chrX 114545776 114546750 -48053180 - L1MA2 LINE L1 -6563 1002 14 1582 253 45 29 chrX 114546773 114547326 -48052604 + L1ME2 LINE L1 5593 6154 -10 321 336 62 0 chrX 114549045 114549158 -48050772 - MIR SINE MIR -91 171 52 275 319 9 69 chrX 114549769 114549847 -48050083 - MIR3 SINE MIR -16 192 111 2267 120 8 14 chrX 114549847 114550204 -48049726 + THE1A LTR MaLR 1 355 0 10807 100 29 18 chrX 114550204 114550566 -48049364 + THE1A-int LTR MaLR 1 358 -1222 2165 126 0 3 chrX 114550566 114550875 -48049055 - AluSx SINE Alu -4 308 1 10807 100 29 18 chrX 114550875 114552075 -48047855 + THE1A-int LTR MaLR 358 1580 0 2463 116 3 0 chrX 114552075 114552429 -48047501 + THE1A LTR MaLR 1 355 0 275 319 9 69 chrX 114552429 114552464 -48047466 - MIR3 SINE MIR -94 114 84 216 0 0 0 chrX 114552617 114552641 -48047289 + (TG)n Simple_repeat Simple_repeat 1 24 0 451 294 18 25 chrX 114553357 114553520 -48046410 + MER117 DNA MER1_type 36 197 0 22 0 0 0 chrX 114553594 114553616 -48046314 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 114553800 114553830 -48046100 + AT_rich Low_complexity Low_complexity 1 30 0 300 132 0 0 chrX 114553838 114553891 -48046039 + L1MB8 LINE L1 6103 6155 -23 * 6495 180 136 95 chrX 114553886 114555274 -48044656 - L1MCa LINE L1 -4005 2421 1092 818 154 0 15 chrX 114555274 114555404 -48044526 - FLAM_C SINE Alu -13 130 3 6495 180 136 95 chrX 114555404 114555422 -48044508 - L1MCa LINE L1 -5334 1092 1076 183 42 0 0 chrX 114555422 114555446 -48044484 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6495 180 136 95 chrX 114555446 114556231 -48043699 - L1MCa LINE L1 -5350 1076 4 1067 295 96 35 chrX 114556213 114556817 -48043113 - L1MC4a LINE L1 -1914 5894 5254 * 278 266 25 13 chrX 114557571 114557650 -48042280 + MIR SINE MIR 12 91 -171 201 343 66 36 chrX 114557870 114558007 -48041923 + MIR SINE MIR 76 216 -46 608 302 79 40 chrX 114558486 114558738 -48041192 + MIR SINE MIR 1 262 0 180 152 0 0 chrX 114558807 114558840 -48041090 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 2362 203 91 9 chrX 114559770 114560455 -48039475 + L1MA2 LINE L1 2571 3311 -2835 * 7644 156 21 13 chrX 114560452 114560762 -48039168 + L1MA2 LINE L1 3746 4052 -2252 203 0 0 36 chrX 114560762 114560790 -48039140 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 2071 111 3 3 chrX 114560795 114561083 -48038847 - AluSx SINE Alu -24 288 1 7644 156 21 13 chrX 114561083 114563304 -48036626 + L1MA2 LINE L1 4055 6304 0 287 335 153 43 chrX 114563439 114563812 -48036118 + L2 LINE L2 2859 3272 0 791 174 0 15 chrX 114563895 114564027 -48035903 + FLAM_C SINE Alu 4 133 -10 1214 294 60 57 chrX 114564568 114564721 -48035209 - L2 LINE L2 -2 3311 3160 297 0 0 0 chrX 114564721 114564754 -48035176 + (TG)n Simple_repeat Simple_repeat 2 34 0 1214 294 60 57 chrX 114564754 114565189 -48034741 - L2 LINE L2 -153 3160 2709 261 196 143 54 chrX 114565423 114565535 -48034395 - MIR SINE MIR -17 245 124 585 224 249 10 chrX 114565711 114565912 -48034018 - MIR SINE MIR -3 259 11 274 200 0 25 chrX 114566432 114566512 -48033418 + GA-rich Low_complexity Low_complexity 1 78 0 280 336 52 9 chrX 114566697 114566813 -48033117 + L2 LINE L2 3152 3272 0 2141 134 129 11 chrX 114567717 114568098 -48031832 + MSTA LTR MaLR 1 426 -2 599 262 48 59 chrX 114568220 114568407 -48031523 + MIR SINE MIR 45 229 -33 303 284 0 0 chrX 114568889 114568956 -48030974 + L1MB8 LINE L1 5990 6056 -122 44509 38 1 1 chrX 114568961 114575000 -48024930 + L1PA3 LINE L1 3 6037 -118 4380 84 8 16 chrX 114575103 114575709 -48024221 + HERVK9 LTR ERVK 67 667 -5249 * 16597 102 4 0 chrX 114575705 114579250 -48020680 + HERVK9 LTR ERVK 1626 5186 -730 553 294 5 5 chrX 114579221 114579425 -48020505 + HERVK9 LTR ERVK 5801 6004 -1748 * 3387 80 0 0 chrX 114579451 114579903 -48020027 + HERVK9 LTR ERVK 5183 5634 -282 2012 91 4 0 chrX 114579988 114580278 -48019652 + HERVK9 LTR ERVK 5635 5914 -2 2772 113 27 40 chrX 114580292 114580772 -48019158 + MER9 LTR ERVK 38 511 0 743 179 0 7 chrX 114580772 114580917 -48019013 + L1PB1 LINE L1 6006 6149 -2 25 0 0 0 chrX 114581248 114581273 -48018657 + AT_rich Low_complexity Low_complexity 1 25 0 4040 117 32 2 chrX 114581429 114582060 -48017870 + L1PA14 LINE L1 5503 6152 -9 2252 174 58 4 chrX 114582075 114582762 -48017168 + L1MA8 LINE L1 5053 5765 -526 2176 175 57 14 chrX 114584130 114584621 -48015309 + L1MA8 LINE L1 5754 6265 -26 1024 204 0 5 chrX 114584736 114584956 -48014974 + L1PB4 LINE L1 5938 6156 0 581 279 131 44 chrX 114585078 114585423 -48014507 + L1M4 LINE L1 4111 4507 -1639 2001 151 0 0 chrX 114585423 114585715 -48014215 + AluSx SINE Alu 1 292 -20 581 279 131 44 chrX 114585715 114585827 -48014103 + L1M4 LINE L1 4507 4608 -1538 26 30 0 0 chrX 114585920 114585953 -48013977 + AT_rich Low_complexity Low_complexity 1 33 0 495 130 60 10 chrX 114586104 114586204 -48013726 - L1M1 LINE L1 -3903 3662 3558 17636 44 3 1 chrX 114586218 114592237 -48007693 - L1PA3 LINE L1 0 6155 9 1496 154 22 0 chrX 114592301 114592625 -48007305 - L1M1 LINE L1 -4036 3529 3199 * 14794 221 30 17 chrX 114592597 114595619 -48004311 - L1PA13 LINE L1 -800 5997 3014 225 0 0 0 chrX 114595619 114595644 -48004286 + (TG)n Simple_repeat Simple_repeat 2 26 0 14794 221 30 17 chrX 114595644 114596542 -48003388 - L1PA13 LINE L1 -3783 3014 2129 1769 151 46 35 chrX 114596542 114596912 -48003018 + THE1C LTR MaLR 1 374 -1 14794 221 30 17 chrX 114596912 114598901 -48001029 - L1PA13 LINE L1 -4668 2129 1 637 264 37 21 chrX 114598907 114599233 -48000697 - L1M4 LINE L1 -810 5336 5006 451 256 7 36 chrX 114599276 114599413 -48000517 + L1M4 LINE L1 3029 3161 -2985 1237 152 91 4 chrX 114599481 114599541 -48000389 - L1MA6 LINE L1 0 6300 6247 195 42 0 0 chrX 114599541 114599565 -48000365 + (TA)n Simple_repeat Simple_repeat 1 24 0 1237 152 91 4 chrX 114599565 114599767 -48000163 - L1MA6 LINE L1 -53 6247 6015 1197 296 18 12 chrX 114599797 114600291 -47999639 - L1M1 LINE L1 -5173 1624 1128 692 328 30 40 chrX 114600894 114601324 -47998606 - L1M1 LINE L1 -5503 1215 790 * 4317 185 19 21 chrX 114601322 114602455 -47997475 - L1MA8 LINE L1 -44 6247 5118 1982 238 19 64 chrX 114602458 114603210 -47996720 - L1M4 LINE L1 -1154 4992 4275 2392 49 26 3 chrX 114603221 114603528 -47996402 - L1PA4 LINE L1 -5 6150 5837 1782 173 0 0 chrX 114653528 114653800 -47946130 - Charlie3 DNA MER1_type -2438 272 1 2058 62 208 235 chrX 114653831 114654431 -47945499 + LTR12 LTR ERV1 1 584 -130 22180 87 4 5 chrX 114654451 114657369 -47942561 + HERV9 LTR ERV1 58 2972 -5427 * 27696 77 12 6 chrX 114657368 114660990 -47938940 + HERV9 LTR ERV1 4756 8399 0 6002 68 1 145 chrX 114660990 114661955 -47937975 + LTR12 LTR ERV1 1 826 0 471 266 37 0 chrX 114662904 114663013 -47936917 + L2 LINE L2 3199 3311 -2 209 274 104 0 chrX 114663032 114663103 -47936827 - MIR SINE MIR -78 130 44 11176 97 1 0 chrX 114663155 114664659 -47935271 + L1PA4 LINE L1 1 1506 -4640 22105 35 2 0 chrX 114664659 114667968 -47931962 + L1PA4 LINE L1 2812 6155 0 770 228 0 95 chrX 114667969 114668180 -47931750 + MIR SINE MIR 23 213 -49 187 241 0 63 chrX 114668849 114668928 -47931002 - MIR SINE MIR -7 255 182 311 285 14 145 chrX 114669008 114669144 -47930786 - L2 LINE L2 -387 2927 2825 2440 60 0 3 chrX 114669144 114669443 -47930487 + AluY SINE Alu 5 302 -9 311 285 14 145 chrX 114669443 114669513 -47930417 - L2 LINE L2 -489 2825 2748 1588 149 21 21 chrX 114670113 114670395 -47929535 + L1MB2 LINE L1 5879 6160 -11 281 394 56 7 chrX 114670531 114670673 -47929257 - L2 LINE L2 -9 3263 3115 635 288 96 71 chrX 114671327 114671775 -47928155 + LTR67 LTR ERVL 97 555 -2 565 365 13 13 chrX 114671871 114672104 -47927826 + MIR SINE MIR 20 252 -10 2708 162 43 2 chrX 114672709 114673171 -47926759 - L1PB4 LINE L1 0 6156 5676 737 43 21 0 chrX 114673182 114673276 -47926654 - L1MA2 LINE L1 0 6304 6209 437 151 0 45 chrX 114673277 114673393 -47926537 - L1PB4 LINE L1 -467 5684 5579 2616 263 38 19 chrX 114673824 114674255 -47925675 + L1ME2 LINE L1 5157 5578 -586 2744 171 19 2 chrX 114674255 114674777 -47925153 - L1MB3 LINE L1 -5 6178 5648 2616 263 38 19 chrX 114674777 114675331 -47924599 + L1ME2 LINE L1 5578 6163 -1 21 36 0 0 chrX 114676104 114676132 -47923798 + AT_rich Low_complexity Low_complexity 1 28 0 23 92 0 0 chrX 114676706 114676771 -47923159 + AT_rich Low_complexity Low_complexity 1 65 0 515 322 26 53 chrX 114677506 114677733 -47922197 - MIR SINE MIR -27 235 15 474 326 39 72 chrX 114678973 114678997 -47920933 - L2 LINE L2 -8 3305 3282 1257 174 26 4 chrX 114678997 114679227 -47920703 + MER46A DNA MER2_type 2 236 0 474 326 39 72 chrX 114679227 114679591 -47920339 - L2 LINE L2 -31 3282 2930 459 338 36 73 chrX 114679619 114680086 -47919844 + L2 LINE L2 1473 1919 -1395 5248 41 2 3 chrX 114680086 114680718 -47919212 - L1PA5 LINE L1 0 6154 5524 459 338 36 73 chrX 114680718 114680798 -47919132 + L2 LINE L2 1919 2000 -1314 616 100 0 10 chrX 114681390 114681490 -47918440 + L1MA6 LINE L1 6202 6300 0 276 263 81 10 chrX 114681868 114681967 -47917963 + MIR SINE MIR 97 202 -60 363 78 0 0 chrX 114681999 114682050 -47917880 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chrX 114682404 114682432 -47917498 + AT_rich Low_complexity Low_complexity 1 28 0 226 356 35 103 chrX 114682627 114682888 -47917042 + L2 LINE L2 2968 3210 -62 773 369 73 20 chrX 114683431 114684127 -47915803 + L2 LINE L2 2555 3272 0 189 0 0 0 chrX 114684433 114684454 -47915476 + (TG)n Simple_repeat Simple_repeat 2 22 0 558 319 22 16 chrX 114685468 114685650 -47914280 - MIR SINE MIR -57 205 23 247 62 0 0 chrX 114685663 114685695 -47914235 - L1MA9 LINE L1 -5 6307 6276 582 276 28 11 chrX 114686296 114686477 -47913453 + MIR SINE MIR 20 203 -59 737 241 79 14 chrX 114689739 114689955 -47909975 - MIR SINE MIR -31 231 2 603 269 46 67 chrX 114690124 114690406 -47909524 + L3 LINE CR1 1064 1339 -238 719 171 26 7 chrX 114690452 114690604 -47909326 - Charlie4 DNA MER1_type -6 1955 1801 180 0 0 0 chrX 114690625 114690645 -47909285 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 385 282 149 0 chrX 114690673 114690861 -47909069 - Charlie4 DNA MER1_type -1745 216 1 342 304 113 30 chrX 114690861 114691029 -47908901 + L3 LINE CR1 1388 1569 -8 213 39 0 0 chrX 114691254 114691280 -47908650 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2077 109 0 11 chrX 114691283 114691566 -47908364 - AluSg SINE Alu -30 280 1 231 344 25 33 chrX 114691752 114691874 -47908056 + L2 LINE L2 2933 3053 -219 613 265 67 59 chrX 114692943 114693181 -47906749 - MIR SINE MIR -21 241 2 1210 99 6 0 chrX 114693828 114694009 -47905921 + L1MA3 LINE L1 6096 6277 -28 341 123 15 0 chrX 114694030 114694095 -47905835 + (TA)n Simple_repeat Simple_repeat 1 66 0 268 200 22 44 chrX 114694099 114694189 -47905741 + L1MC4 LINE L1 6615 6702 -1340 363 230 0 0 chrX 114694195 114694308 -47905622 + (TA)n Simple_repeat Simple_repeat 1 113 0 232 303 0 0 chrX 114694312 114694401 -47905529 - L1MC4 LINE L1 -1339 6703 6615 269 259 0 0 chrX 114694420 114694505 -47905425 - L1MC4 LINE L1 -1344 6698 6614 297 265 0 10 chrX 114695062 114695079 -47904851 - L1MA10 LINE L1 -1 6333 6317 1588 237 71 79 chrX 114695079 114695738 -47904192 - L1ME2 LINE L1 -9 6155 5502 1654 192 38 9 chrX 114695740 114696084 -47903846 - MER4D LTR ERV1 0 903 550 1424 112 167 27 chrX 114696120 114696378 -47903552 - MER49 LTR ERV1 -629 294 1 2677 184 174 22 chrX 114696398 114697081 -47902849 - LTR48 LTR ERV1 0 787 1 898 173 25 52 chrX 114697081 114697350 -47902580 - L1ME2 LINE L1 -683 5481 5219 2358 35 3 0 chrX 114697402 114697687 -47902243 - L1PA8 LINE L1 -298 5874 5589 1128 300 76 38 chrX 114697690 114699098 -47900832 - L1M4 LINE L1 -4832 1281 35 252 0 0 0 chrX 114699141 114699169 -47900761 + (TAG)n Simple_repeat Simple_repeat 1 28 0 214 323 46 15 chrX 114699204 114699269 -47900661 - MIR SINE MIR -195 67 1 1966 113 16 4 chrX 114699438 114699870 -47900060 + MER41C LTR ERV1 1 508 -46 446 122 33 44 chrX 114699877 114699967 -47899963 + MER41C-int LTR ERV1 1 89 -5857 * 27664 121 11 7 chrX 114699964 114704033 -47895897 + MER41C-int LTR ERV1 3670 7756 0 1778 148 69 3 chrX 114704033 114704338 -47895592 + MER41C LTR ERV1 1 325 -229 963 103 0 33 chrX 114704342 114704526 -47895404 + (TA)n Simple_repeat Simple_repeat 1 178 0 308 235 71 12 chrX 114704538 114704623 -47895307 + L1MC4 LINE L1 6614 6703 -1339 1317 148 5 0 chrX 114704635 114704845 -47895085 + MER41C LTR ERV1 344 554 0 184 349 0 24 chrX 114704913 114704996 -47894934 - MIR SINE MIR -131 131 51 5039 100 34 5 chrX 114705253 114706030 -47893900 + L1MA3 LINE L1 5507 6305 0 852 266 28 16 chrX 114707000 114707248 -47892682 - MIR SINE MIR 0 262 12 240 302 127 40 chrX 114707323 114707449 -47892481 + MIR3 SINE MIR 4 140 -68 * 398 213 50 0 chrX 114707448 114707528 -47892402 - L2 LINE L2 -8 3264 3181 208 300 0 0 chrX 114707538 114707588 -47892342 + MIR3 SINE MIR 139 188 -20 374 227 57 0 chrX 114708498 114708586 -47891344 - MIR3 SINE MIR -42 166 74 17244 183 47 9 chrX 114710614 114712567 -47887363 - L1MA2 LINE L1 0 7723 5846 2250 91 0 3 chrX 114712567 114712854 -47887076 - AluSg SINE Alu -20 290 5 17244 183 47 9 chrX 114712854 114714894 -47885036 - L1MA2 LINE L1 -1877 5846 3885 207 0 0 0 chrX 114714894 114714917 -47885013 + (TAATG)n Simple_repeat Simple_repeat 3 25 0 17244 183 47 9 chrX 114714917 114718165 -47881765 - L1MA2 LINE L1 -3838 3885 196 829 235 86 0 chrX 114718159 114718321 -47881609 - L1M1 LINE L1 -5803 1762 1587 * 790 186 44 22 chrX 114718336 114718519 -47881411 - L1MA2 LINE L1 -7363 202 16 21 0 0 0 chrX 114720054 114720075 -47879855 + AT_rich Low_complexity Low_complexity 1 21 0 3512 142 4 2 chrX 114720075 114720624 -47879306 - L1PA15 LINE L1 -144 6021 5472 18512 27 1 1 chrX 114721174 114724284 -47875646 + L1PA3 LINE L1 3060 6155 0 25 0 0 0 chrX 114724405 114724430 -47875500 + AT_rich Low_complexity Low_complexity 1 25 0 238 329 201 4 chrX 114724624 114724858 -47875072 + L2 LINE L2 3034 3313 0 576 273 41 23 chrX 114725015 114725187 -47874743 + MER5B DNA MER1_type 4 178 0 265 381 28 12 chrX 114726196 114726445 -47873485 - L2 LINE L2 -1362 1952 1700 1314 253 93 30 chrX 114726524 114726998 -47872932 + MLT1J LTR MaLR 8 511 0 287 207 103 0 chrX 114727253 114727340 -47872590 + L1M1 LINE L1 12 107 -7458 12287 173 27 13 chrX 114727525 114729818 -47870112 + L1M1 LINE L1 101 2425 -5140 3223 185 81 12 chrX 114729818 114731200 -47868730 + L1M1 LINE L1 2875 4349 -3216 240 35 0 0 chrX 114732105 114732134 -47867796 + (A)n Simple_repeat Simple_repeat 1 29 0 2313 99 10 0 chrX 114732834 114733136 -47866794 + AluSg SINE Alu 1 305 -5 468 233 75 23 chrX 114733294 114733427 -47866503 - MIR SINE MIR -9 253 114 251 350 60 17 chrX 114734146 114734263 -47865667 + L2 LINE L2 3192 3313 0 393 222 19 74 chrX 114734367 114734475 -47865455 + MER5B DNA MER1_type 2 103 -75 585 229 98 20 chrX 114734514 114734557 -47865373 - MER5A DNA MER1_type -21 168 130 2388 69 0 3 chrX 114734557 114734860 -47865070 + AluY SINE Alu 1 302 -9 585 229 98 20 chrX 114734860 114734969 -47864961 - MER5A DNA MER1_type -59 130 4 252 200 18 0 chrX 114735063 114735118 -47864812 - MIR SINE MIR -19 243 188 4180 282 38 46 chrX 114737781 114738821 -47861109 + L1PA15 LINE L1 1 1047 -6537 2306 118 129 3 chrX 114738821 114739201 -47860729 + MSTA LTR MaLR 1 428 0 4180 282 38 46 chrX 114739201 114740513 -47859417 + L1PA15 LINE L1 1047 2367 -5217 1575 142 106 33 chrX 114740513 114740787 -47859143 + AluSg SINE Alu 17 310 0 4180 282 38 46 chrX 114740787 114742328 -47857602 + L1PA15 LINE L1 2367 4132 -3452 2008 91 13 8 chrX 114742332 114742722 -47857208 + LTR7 LTR ERV1 1 443 -7 11275 100 1 34 chrX 114742728 114744570 -47855360 + HERVH LTR ERV1 1215 2995 -4718 864 153 7 0 chrX 114744549 114744699 -47855231 + HERVH LTR ERV1 3140 3290 -4423 * 1519 122 0 0 chrX 114744698 114744935 -47854995 + HERVH LTR ERV1 3500 3736 -3977 1509 158 78 4 chrX 114744928 114745230 -47854700 + HERVH LTR ERV1 3962 4288 -2372 * 5922 119 7 2 chrX 114745230 114746155 -47853775 + HERVH LTR ERV1 4221 5149 -2564 1328 117 33 0 chrX 114746156 114746369 -47853561 + HERVH LTR ERV1 5600 5819 -1894 256 108 0 0 chrX 114746369 114746406 -47853524 + HERVH LTR ERV1 7324 7360 -353 2172 93 50 14 chrX 114746406 114746770 -47853160 + HERVH LTR ERV1 7337 7713 0 2571 80 131 5 chrX 114746770 114747168 -47852762 + LTR7 LTR ERV1 1 448 -2 10395 208 9 16 chrX 114747186 114750665 -47849265 + L1PA15 LINE L1 4148 7603 0 215 216 0 0 chrX 114751450 114751501 -47848429 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 297 271 180 41 chrX 114751568 114751744 -47848186 - L2 LINE L2 -274 2998 2797 703 314 137 29 chrX 114751870 114752486 -47847444 - L2 LINE L2 0 3313 2614 354 190 58 66 chrX 114752591 114752712 -47847218 + MER103 DNA DNA 3 122 -44 957 313 9 12 chrX 114753268 114753604 -47846326 - LTR16A LTR ERVL -100 350 16 323 189 57 74 chrX 114753682 114753804 -47846126 + MER103 DNA DNA 3 122 -44 946 27 0 0 chrX 114754259 114754371 -47845559 - L1PA3 LINE L1 0 6155 6044 355 225 42 0 chrX 114754728 114754799 -47845131 - MER2 DNA MER2_type -2 343 270 1228 144 5 0 chrX 114754825 114755027 -47844903 - MER2 DNA MER2_type -139 206 4 261 0 0 0 chrX 114755196 114755225 -47844705 + (TG)n Simple_repeat Simple_repeat 2 30 0 1014 83 14 0 chrX 114756166 114756310 -47843620 - L1MA1 LINE L1 0 6302 6157 4588 197 14 63 chrX 114756310 114757466 -47842464 - L1M1 LINE L1 -6448 1117 19 713 115 0 0 chrX 114757530 114757626 -47842304 - AluSg/x SINE Alu -20 290 195 892 131 60 10 chrX 114758633 114758825 -47841105 - THE1C LTR MaLR -153 211 17 201 341 107 21 chrX 114760171 114760499 -47839431 + L2 LINE L2 1967 2322 -992 279 79 0 0 chrX 114760759 114760797 -47839133 + (TA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chrX 114760796 114760819 -47839111 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 475 207 0 18 chrX 114760849 114760960 -47838970 + MSTA LTR MaLR 1 109 -319 * 730 165 57 32 chrX 114760935 114761093 -47838837 - THE1C LTR MaLR -213 162 1 3518 177 86 15 chrX 114761093 114761945 -47837985 + THE1C-int LTR MaLR 739 1580 0 1880 152 35 19 chrX 114761945 114762313 -47837617 + THE1C LTR MaLR 1 374 -1 23 54 0 0 chrX 114762502 114762539 -47837391 + AT_rich Low_complexity Low_complexity 1 37 0 249 184 119 101 chrX 114762836 114762945 -47836985 - L1ME LINE L1 -463 5658 5548 761 241 64 12 chrX 114763109 114763358 -47836572 + MER93b LTR ERV1 98 359 -14 269 284 134 0 chrX 114763365 114763492 -47836438 - L1ME LINE L1 -2278 5530 5387 465 268 11 56 chrX 114763570 114763749 -47836181 + MIR SINE MIR 92 262 0 25 0 0 0 chrX 114763790 114763815 -47836115 + AT_rich Low_complexity Low_complexity 1 25 0 230 252 56 28 chrX 114764077 114764184 -47835746 - L1ME LINE L1 -1313 4833 4724 328 248 120 8 chrX 114764820 114764953 -47834977 - L1ME LINE L1 -3241 2905 2758 1496 206 20 7 chrX 114765071 114765363 -47834567 - AluJo SINE Alu -16 296 1 222 343 14 0 chrX 114765392 114765465 -47834465 + MIR SINE MIR 49 122 -140 321 26 0 0 chrX 114765711 114765749 -47834181 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 254 266 59 15 chrX 114765791 114765878 -47834052 - MIR SINE MIR -104 104 30 505 268 6 27 chrX 114766199 114766382 -47833548 + MER104 DNA MER2_type 1 179 -1 24 0 0 0 chrX 114766453 114766477 -47833453 + AT_rich Low_complexity Low_complexity 1 24 0 184 143 0 0 chrX 114766485 114766513 -47833417 - MIR SINE MIR -64 144 117 297 85 0 0 chrX 114766988 114767035 -47832895 + U5 snRNA snRNA 2 48 -68 252 310 0 14 chrX 114767193 114767264 -47832666 - MIR3 SINE MIR -8 200 131 278 320 30 0 chrX 114767468 114767568 -47832362 + MIR SINE MIR 79 181 -81 318 278 0 0 chrX 114767981 114768053 -47831877 + Charlie1 DNA MER1_type 1 72 -2689 * 1550 149 100 26 chrX 114768050 114768439 -47831491 + Charlie1 DNA MER1_type 2343 2760 -1 1010 228 23 5 chrX 114768498 114768717 -47831213 + MER58A DNA MER1_type 1 223 -1 303 396 9 0 chrX 114768866 114768972 -47830958 - L2 LINE L2 -10 3262 3156 3369 104 28 8 chrX 114769188 114769724 -47830206 - L1MA1 LINE L1 0 6302 5756 3280 106 22 1 chrX 114769724 114770288 -47829642 + L1MA1 LINE L1 5169 5743 -559 2338 108 6 0 chrX 114770623 114770958 -47828972 - L1PA14 LINE L1 -14 6147 5811 371 205 52 11 chrX 114771066 114771169 -47828761 - MIR SINE MIR -63 145 37 2367 109 5 56 chrX 114771348 114771743 -47828187 - THE1C LTR MaLR 0 375 1 517 273 52 17 chrX 114771948 114772120 -47827810 + MIR SINE MIR 84 261 -1 243 278 124 62 chrX 114772742 114772839 -47827091 - L2 LINE L2 -1 3271 3169 1079 179 28 9 chrX 114772872 114773090 -47826840 - L1MB7 LINE L1 -8 6176 5955 796 352 45 43 chrX 114773102 114773822 -47826108 - L2 LINE L2 0 3272 2556 504 158 42 0 chrX 114773944 114774039 -47825891 + LTR50 LTR ERVL 588 686 -109 295 227 30 156 chrX 114774255 114774424 -47825506 - MIR3 SINE MIR -5 203 57 4726 92 0 9 chrX 114774851 114775538 -47824392 + L1PA10 LINE L1 5501 6181 0 518 257 139 7 chrX 114775676 114775820 -47824110 + MER5B DNA MER1_type 1 163 -15 624 317 74 0 chrX 114776368 114776598 -47823332 + MIR SINE MIR 5 251 -11 198 103 0 0 chrX 114777364 114777393 -47822537 + (T)n Simple_repeat Simple_repeat 1 29 0 495 318 91 29 chrX 114777616 114777858 -47822072 - MIR SINE MIR -4 258 2 1040 16 0 0 chrX 114778557 114778679 -47821251 + L1PA4 LINE L1 6031 6152 -3 183 80 0 0 chrX 114778682 114778707 -47821223 + (A)n Simple_repeat Simple_repeat 1 25 0 4760 171 23 7 chrX 114779292 114780280 -47819650 - L1MB2 LINE L1 0 6171 5168 360 77 0 0 chrX 114780573 114780625 -47819305 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 631 288 132 31 chrX 114780629 114780886 -47819044 - L2 LINE L2 -17 3296 3014 253 394 44 20 chrX 114781952 114782155 -47817775 + L2 LINE L2 2757 2964 -350 308 186 0 34 chrX 114782556 114782615 -47817315 + L2 LINE L2 3257 3313 0 1736 168 0 36 chrX 114783221 114783525 -47816405 + AluJo SINE Alu 1 293 -19 543 279 59 81 chrX 114783670 114784028 -47815902 + L1MC4a LINE L1 5350 5699 -463 472 278 40 8 chrX 114784047 114784173 -47815757 - L2 LINE L2 -2 3311 3182 322 272 146 80 chrX 114784173 114784522 -47815408 + L1MC4a LINE L1 5705 6076 -1732 1891 187 47 28 chrX 114784591 114785014 -47814916 - MSTB1 LTR MaLR -1 431 1 27 29 0 0 chrX 114785044 114785078 -47814852 + AT_rich Low_complexity Low_complexity 1 34 0 180 111 0 0 chrX 114785097 114785124 -47814806 + (A)n Simple_repeat Simple_repeat 1 27 0 673 271 107 18 chrX 114787757 114787982 -47811948 - MIR SINE MIR -17 245 1 226 0 29 29 chrX 114788871 114788906 -47811024 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 29 0 0 0 chrX 114789074 114789103 -47810827 + AT_rich Low_complexity Low_complexity 1 29 0 370 338 106 7 chrX 114789591 114789733 -47810197 + MIR3 SINE MIR 39 194 -14 219 381 13 52 chrX 114790720 114790875 -47809055 - MIR3 SINE MIR -38 170 22 252 243 144 36 chrX 114790955 114791066 -47808864 + MIR SINE MIR 3 125 -137 3375 236 123 28 chrX 114791081 114791628 -47808302 - L1MEc LINE L1 -3940 2456 1962 493 54 14 14 chrX 114791628 114791702 -47808228 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 3375 236 123 28 chrX 114791702 114792152 -47807778 - L1MEc LINE L1 -4434 1962 1556 1938 168 41 68 chrX 114792152 114792230 -47807700 + MSTC LTR MaLR 1 80 -348 2239 99 0 0 chrX 114792230 114792514 -47807416 - AluSx SINE Alu -24 288 5 1938 168 41 68 chrX 114792514 114792875 -47807055 + MSTC LTR MaLR 80 428 0 3375 236 123 28 chrX 114792875 114793318 -47806612 - L1MEc LINE L1 -4840 1556 878 2773 261 45 13 chrX 114793319 114794100 -47805830 - L1MEc LINE L1 -5555 841 36 353 274 20 10 chrX 114794107 114794209 -47805721 + MIR SINE MIR 106 208 -54 396 0 0 0 chrX 114794549 114794593 -47805337 + (TG)n Simple_repeat Simple_repeat 2 45 0 293 0 27 0 chrX 114794597 114794634 -47805296 + (GA)n Simple_repeat Simple_repeat 1 38 0 279 282 115 0 chrX 114795070 114795148 -47804782 - L2 LINE L2 0 3313 3227 326 291 116 37 chrX 114795705 114795894 -47804036 - L2 LINE L2 -350 2964 2761 508 351 16 5 chrX 114795914 114796099 -47803831 + MIR3 SINE MIR 19 205 -3 702 148 30 53 chrX 114796442 114796611 -47803319 - L1MB8 LINE L1 -5 6173 6009 2408 149 33 23 chrX 114796741 114797171 -47802759 - Tigger2a DNA MER2_type 0 434 1 280 261 250 0 chrX 114798107 114798199 -47801731 + MER5A DNA MER1_type 75 189 0 202 270 0 16 chrX 114798250 114798313 -47801617 - MER5A DNA MER1_type -82 107 46 537 310 90 57 chrX 114799576 114799998 -47799932 - L2 LINE L2 -1 3312 2877 182 346 45 45 chrX 114800543 114800676 -47799254 + L2 LINE L2 3055 3187 -85 1276 209 38 72 chrX 114801085 114801299 -47798631 - L1MC5 LINE L1 -53 7908 7688 722 108 47 0 chrX 114801299 114801428 -47798502 - L1MA8 LINE L1 -6 6285 6151 1276 209 38 72 chrX 114801428 114801686 -47798244 - L1MC5 LINE L1 -273 7688 7452 1277 150 26 26 chrX 114801705 114801932 -47797998 - AluJo SINE Alu 0 312 86 504 250 36 36 chrX 114801939 114802107 -47797823 - L1MC5 LINE L1 -518 7443 7276 415 271 16 0 chrX 114802107 114802229 -47797701 + MIR SINE MIR 110 233 -29 623 39 0 0 chrX 114802235 114802313 -47797617 + L1PA5 LINE L1 6073 6150 -4 2063 115 6 13 chrX 114802339 114802688 -47797242 + AluSx SINE Alu 1 347 0 220 381 0 0 chrX 114802749 114802812 -47797118 - L2 LINE L2 -11 3261 3199 501 266 14 92 chrX 114802814 114803021 -47796909 - L1M4 LINE L1 -1042 5104 4914 956 277 72 21 chrX 114803033 114803563 -47796367 - L1MDa LINE L1 -2824 3716 3160 1256 113 5 0 chrX 114803597 114803782 -47796148 + AluY SINE Alu 126 311 0 5124 173 59 11 chrX 114803810 114804761 -47795169 - L1MA10 LINE L1 0 6334 5430 180 0 0 0 chrX 114804761 114804781 -47795149 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 2284 88 7 0 chrX 114804790 114805086 -47794844 - AluSx SINE Alu -14 298 1 5124 173 59 11 chrX 114805086 114805564 -47794366 - L1MA10 LINE L1 -911 5423 4969 198 0 0 0 chrX 114805564 114805586 -47794344 + (CTATT)n Simple_repeat Simple_repeat 5 26 0 5124 173 59 11 chrX 114805586 114806036 -47793894 - L1MA10 LINE L1 -1365 4969 4354 786 215 0 0 chrX 114806035 114806198 -47793732 + L1MA10 LINE L1 4196 4358 -1788 * 280 246 14 0 chrX 114806196 114806265 -47793665 - L1MDa LINE L1 -3371 3169 3100 * 2301 102 13 0 chrX 114806363 114806668 -47793262 - AluSc SINE Alu 0 309 1 648 241 55 13 chrX 114806705 114806942 -47792988 - L1MDa LINE L1 -3618 2922 2676 5059 132 21 22 chrX 114806943 114807819 -47792111 - L1PA16 LINE L1 0 6166 5311 216 0 0 0 chrX 114807819 114807843 -47792087 + (TTA)n Simple_repeat Simple_repeat 2 25 0 5059 132 21 22 chrX 114807843 114808638 -47791292 - L1PA16 LINE L1 -855 5311 4517 240 205 23 0 chrX 114808677 114808743 -47791187 - L1MDa LINE L1 -3942 2598 2530 1865 207 26 63 chrX 114808918 114809287 -47790643 + Charlie1b DNA MER1_type 6 350 -2411 882 176 0 30 chrX 114809287 114809452 -47790478 - FRAM SINE Alu -2 164 5 1865 207 26 63 chrX 114809452 114809618 -47790312 + Charlie1b DNA MER1_type 350 521 -2 5292 90 4 1 chrX 114810467 114811199 -47788731 - L1PA10 LINE L1 0 6168 5435 813 66 9 0 chrX 114811199 114811305 -47788625 - U6 snRNA snRNA 0 107 1 609 342 51 0 chrX 114811693 114811930 -47788000 + MIR SINE MIR 14 262 0 307 260 95 106 chrX 114813243 114813516 -47786414 + MARNA DNA Mariner 175 444 -142 268 324 0 0 chrX 114813738 114813812 -47786118 - L2 LINE L2 -199 3073 3000 1552 184 7 11 chrX 114813864 114814142 -47785788 + AluJo SINE Alu 13 289 -23 369 290 36 14 chrX 114814152 114814290 -47785640 - L2 LINE L2 -262 3010 2870 180 316 81 88 chrX 114814832 114815129 -47784801 + L2 LINE L2 1357 1651 -1663 387 215 104 30 chrX 114815262 114815397 -47784533 - MIR SINE MIR 0 262 118 418 342 133 4 chrX 114815606 114815846 -47784084 + L2 LINE L2 2118 2388 -926 252 376 88 11 chrX 114815889 114816070 -47783860 + L2 LINE L2 2622 2816 -498 544 319 30 0 chrX 114816101 114816270 -47783660 + MER5B DNA MER1_type 4 177 -1 1243 256 73 5 chrX 114816384 114816809 -47783121 - L1ME2 LINE L1 -10 6154 5698 1115 217 32 29 chrX 114817021 114817298 -47782632 - MLT1D LTR MaLR -8 497 220 2964 134 37 17 chrX 114817322 114817838 -47782092 - L1MA7 LINE L1 -25 6266 5741 484 184 117 98 chrX 114817840 114818003 -47781927 - MLT1D LTR MaLR -460 166 1 426 208 28 47 chrX 114818023 114818129 -47781801 + MIR SINE MIR 123 226 -36 1199 276 101 24 chrX 114818144 114818600 -47781330 - L2 LINE L2 -2 3311 2821 291 202 87 10 chrX 114818667 114818771 -47781159 - L1MA7 LINE L1 -124 6167 6056 201 301 36 36 chrX 114818786 114818869 -47781061 + L2 LINE L2 3226 3308 -5 347 204 131 22 chrX 114819387 114819524 -47780406 - MER53 DNA DNA 0 189 38 2253 266 76 39 chrX 114819609 114820421 -47779509 + L2 LINE L2 1785 2626 -688 2102 124 59 31 chrX 114820421 114820775 -47779155 + THE1B LTR MaLR 1 364 0 11723 98 4 0 chrX 114820775 114822349 -47777581 + THE1B-int LTR MaLR 1 1580 0 2331 123 31 14 chrX 114822349 114822707 -47777223 + THE1B LTR MaLR 1 364 0 189 293 17 0 chrX 114822708 114822766 -47777164 + MIR3 SINE MIR 147 205 -3 2150 111 0 0 chrX 114823105 114823410 -47776520 - AluSc SINE Alu 0 305 1 331 283 35 0 chrX 114823509 114823622 -47776308 + L3 LINE CR1 1234 1350 -227 422 307 123 22 chrX 114824158 114824337 -47775593 - MIR SINE MIR -6 256 60 1272 259 74 42 chrX 114824894 114825584 -47774346 + L1ME3 LINE L1 3729 4440 -1706 1876 244 84 52 chrX 114825603 114826375 -47773555 + L1ME3 LINE L1 4796 5605 -557 2427 62 3 3 chrX 114826375 114826681 -47773249 - AluY SINE Alu -5 306 1 1876 244 84 52 chrX 114826681 114827029 -47772901 + L1ME3 LINE L1 5605 5940 -222 641 268 109 18 chrX 114827036 114827365 -47772565 - L1M4 LINE L1 -1836 4310 3952 330 138 0 0 chrX 114828141 114828199 -47771731 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 834 157 0 8 chrX 114828209 114828343 -47771587 - FLAM_C SINE Alu 0 133 1 754 280 19 38 chrX 114828391 114828602 -47771328 - MIR SINE MIR -45 217 11 200 375 10 0 chrX 114828665 114828761 -47771169 - MIR SINE MIR -84 178 82 183 74 0 0 chrX 114828979 114828995 -47770935 + (TC)n Simple_repeat Simple_repeat 2 20 -8 2490 54 0 0 chrX 114828995 114829289 -47770641 - AluY SINE Alu -17 294 1 183 74 0 0 chrX 114829289 114829299 -47770631 + (TC)n Simple_repeat Simple_repeat 19 28 0 746 222 0 51 chrX 114829386 114829562 -47770368 + MER20 DNA MER1_type 1 167 -52 1336 169 66 33 chrX 114829562 114829762 -47770168 + L1MA9 LINE L1 5968 6185 -127 1486 208 106 6 chrX 114829762 114830122 -47769808 - MSTD LTR MaLR 0 396 1 1336 169 66 33 chrX 114830122 114830253 -47769677 + L1MA9 LINE L1 6185 6310 -2 256 196 0 20 chrX 114830276 114830327 -47769603 + MER20 DNA MER1_type 169 218 -1 1719 143 68 16 chrX 114830879 114831186 -47768744 - L1PA15 LINE L1 0 6165 5843 23 0 0 0 chrX 114831226 114831249 -47768681 + AT_rich Low_complexity Low_complexity 1 23 0 543 297 59 25 chrX 114831471 114831707 -47768223 + MIR SINE MIR 13 256 -6 327 333 76 0 chrX 114832168 114832366 -47767564 + L1ME LINE L1 5547 5759 -362 25 0 0 0 chrX 114832590 114832615 -47767315 + AT_rich Low_complexity Low_complexity 1 25 0 224 236 0 0 chrX 114833352 114833407 -47766523 + T-rich Low_complexity Low_complexity 1 55 0 686 292 80 10 chrX 114833778 114834079 -47765851 - L1ME4a LINE L1 -266 5855 5534 328 267 76 0 chrX 114834425 114834530 -47765400 - L2 LINE L2 -11 3261 3149 3413 54 2 0 chrX 114834781 114835205 -47764725 + L1PA7 LINE L1 5716 6140 -14 576 278 100 6 chrX 114837234 114837414 -47762516 + MIR SINE MIR 48 244 -18 2557 50 0 0 chrX 114837863 114838163 -47761767 - AluY SINE Alu -11 300 1 15210 130 27 6 chrX 114838489 114840287 -47759643 + Tigger1 DNA MER2_type 1 1864 -554 2325 101 0 3 chrX 114840287 114840593 -47759337 - AluSq SINE Alu -8 305 1 15210 130 27 6 chrX 114840593 114841156 -47758774 + Tigger1 DNA MER2_type 1864 2413 -5 1000 251 17 13 chrX 114841789 114842020 -47757910 + MIR SINE MIR 5 236 -26 1976 235 69 29 chrX 114842146 114842724 -47757206 + L1ME3A LINE L1 5565 6165 -5 469 113 104 35 chrX 114843299 114843414 -47756516 - L1MA4 LINE L1 0 6300 6178 1794 139 75 31 chrX 114843584 114843943 -47755987 - THE1C LTR MaLR 0 375 1 360 0 0 0 chrX 114843959 114843999 -47755931 + (TG)n Simple_repeat Simple_repeat 1 40 0 620 276 101 62 chrX 114844558 114844895 -47755035 - L2 LINE L2 -12 3260 2911 2521 123 5 5 chrX 114845153 114845528 -47754402 + THE1C LTR MaLR 1 375 0 24 0 0 0 chrX 114849959 114849983 -47749947 + AT_rich Low_complexity Low_complexity 1 24 0 518 305 84 14 chrX 114850831 114851066 -47748864 - MIR SINE MIR -4 258 5 321 314 107 35 chrX 114851090 114851259 -47748671 - MIR SINE MIR -74 188 8 21 0 0 0 chrX 114852536 114852557 -47747373 + AT_rich Low_complexity Low_complexity 1 21 0 2054 130 3 0 chrX 114852631 114852924 -47747006 - AluSx SINE Alu -18 294 1 21 0 0 0 chrX 114853236 114853257 -47746673 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 114853616 114853637 -47746293 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chrX 114855817 114855863 -47744067 + (GA)n Simple_repeat Simple_repeat 1 46 0 279 93 0 0 chrX 114855865 114855908 -47744022 + (TG)n Simple_repeat Simple_repeat 2 44 0 365 243 0 65 chrX 114857906 114857946 -47741984 - L3 LINE CR1 -565 1012 971 2172 124 7 3 chrX 114857946 114858253 -47741677 - AluSx SINE Alu -4 308 1 365 243 0 65 chrX 114858253 114858319 -47741611 - L3 LINE CR1 -606 971 913 298 345 110 14 chrX 114858329 114858538 -47741392 - L3 LINE CR1 -1133 444 216 301 325 106 0 chrX 114859472 114859595 -47740335 - MIR3 SINE MIR -41 167 32 473 312 62 7 chrX 114859909 114860185 -47739745 + L1ME3A LINE L1 4603 4893 -1253 484 321 52 46 chrX 114860383 114860710 -47739220 + L1ME3A LINE L1 5023 5351 -795 600 236 118 32 chrX 114860712 114860986 -47738944 + L1ME3A LINE L1 5476 5789 -373 2202 128 0 6 chrX 114861011 114861324 -47738606 + AluSx SINE Alu 1 311 -1 234 236 14 0 chrX 114861358 114861430 -47738500 + MER116 DNA Mariner 6 78 -2 310 307 89 61 chrX 114861546 114861760 -47738170 + L1ME3A LINE L1 5934 6167 -3 22 0 0 0 chrX 114861767 114861789 -47738141 + AT_rich Low_complexity Low_complexity 1 22 0 417 302 59 24 chrX 114862591 114862760 -47737170 - MIR3 SINE MIR -10 198 24 277 320 70 8 chrX 114868298 114868426 -47731504 + L2 LINE L2 3146 3281 -32 241 326 11 11 chrX 114870545 114870634 -47729296 + Charlie4 DNA MER1_type 1869 1957 -4 2057 124 3 40 chrX 114870904 114871226 -47728704 - AluSx SINE Alu -2 310 1 1329 104 23 114 chrX 114873909 114874217 -47725713 - L1PA11 LINE L1 0 6174 5895 412 310 87 38 chrX 114874723 114874907 -47725023 - L2 LINE L2 -1 3312 3120 219 269 381 0 chrX 114874948 114875145 -47724785 - L2 LINE L2 -838 2476 2205 5217 213 42 27 chrX 114875467 114877855 -47722075 - L1MB3 LINE L1 -9 6174 3749 5860 199 60 2 chrX 114877873 114879295 -47720635 - L1MC1 LINE L1 -19 6314 4790 356 183 0 0 chrX 114879297 114879357 -47720573 - FLAM_A SINE Alu -11 122 63 18104 193 28 12 chrX 114879357 114882352 -47717578 - L1MA2 LINE L1 -15 7708 4763 1590 49 0 5 chrX 114882352 114882556 -47717374 - L1PA4 LINE L1 -1 6154 5952 18104 193 28 12 chrX 114882556 114883590 -47716340 - L1MA2 LINE L1 -2960 4763 3747 180 0 0 0 chrX 114883590 114883610 -47716320 + (TTG)n Simple_repeat Simple_repeat 2 21 0 18104 193 28 12 chrX 114883610 114883856 -47716074 - L1MA2 LINE L1 -3976 3747 3506 4937 68 0 3 chrX 114883856 114884488 -47715442 - L1PA7 LINE L1 0 6154 5525 1833 131 0 0 chrX 114884488 114884747 -47715183 + AluSc SINE Alu 31 289 -20 18104 193 28 12 chrX 114884747 114888047 -47711883 - L1MA2 LINE L1 -4216 3507 11 27 49 0 0 chrX 114888088 114888129 -47711801 + AT_rich Low_complexity Low_complexity 1 41 0 1825 215 48 7 chrX 114888292 114888730 -47711200 + L1MA9 LINE L1 3969 4424 -1722 4668 217 26 16 chrX 114888733 114889741 -47710189 + L1MA1 LINE L1 20 1037 -6528 7265 151 15 9 chrX 114889747 114891082 -47708848 + L1MA1 LINE L1 2284 3626 -3939 2160 117 25 28 chrX 114891068 114891087 -47708843 + L1PB2 LINE L1 5761 5779 -372 * 6911 69 1 1 chrX 114891087 114892535 -47707395 + L1PA7 LINE L1 4742 6154 0 2160 117 25 28 chrX 114892535 114892874 -47707056 + L1PB2 LINE L1 5779 6118 -33 13751 192 31 8 chrX 114892894 114896884 -47703046 + L1MA1 LINE L1 3621 7679 -42 3996 188 47 59 chrX 114896970 114898912 -47701018 + L1MA9 LINE L1 4398 6312 0 276 301 96 31 chrX 114899159 114899354 -47700576 - MIR SINE MIR -11 251 36 885 319 81 26 chrX 114899784 114900167 -47699763 - MLT1J LTR MaLR -102 409 6 21 71 0 0 chrX 114900838 114900880 -47699050 + AT_rich Low_complexity Low_complexity 1 42 0 200 204 0 0 chrX 114900919 114900968 -47698962 + (TA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chrX 114901153 114901175 -47698755 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chrX 114901245 114901277 -47698653 + AT_rich Low_complexity Low_complexity 1 32 0 4016 171 44 8 chrX 114901277 114902070 -47697860 - L1MA4 LINE L1 0 6300 5479 962 86 49 37 chrX 114902076 114902239 -47697691 - L1MA3 LINE L1 -10 6295 6131 1213 169 40 0 chrX 114902243 114902569 -47697361 - L1MA4 LINE L1 -743 5403 5135 393 75 0 0 chrX 114902594 114902647 -47697283 + (TG)n Simple_repeat Simple_repeat 1 53 0 496 291 45 0 chrX 114902782 114902916 -47697014 - L2 LINE L2 -3 3310 3171 242 327 57 54 chrX 114903065 114903490 -47696440 + L1ME LINE L1 3723 4148 -1998 409 312 105 24 chrX 114903498 114904052 -47695878 + L1ME LINE L1 4229 4827 -1319 382 292 43 12 chrX 114904257 114904418 -47695512 + L1ME LINE L1 5532 5697 -424 327 49 0 0 chrX 114904620 114904661 -47695269 + (CA)n Simple_repeat Simple_repeat 1 41 0 6280 142 17 31 chrX 114905012 114905989 -47693941 - L1MA2 LINE L1 0 7723 6757 1443 188 40 4 chrX 114905989 114906137 -47693793 - AluJb SINE Alu -30 282 118 198 0 0 0 chrX 114906137 114906159 -47693771 + (TG)n Simple_repeat Simple_repeat 2 23 0 1443 188 40 4 chrX 114906159 114906282 -47693648 - AluJb SINE Alu -194 118 1 6280 142 17 31 chrX 114906282 114906959 -47692971 - L1MA2 LINE L1 -966 6757 6072 * 9280 199 254 22 chrX 114906927 114908894 -47691036 - L1MA2 LINE L1 -2678 4887 3378 240 184 20 20 chrX 114908894 114908943 -47690987 + THE1B LTR MaLR 316 364 0 9280 199 254 22 chrX 114908943 114909153 -47690777 - L1MA2 LINE L1 -4187 3378 3218 333 0 0 0 chrX 114909153 114909190 -47690740 + (TC)n Simple_repeat Simple_repeat 2 38 0 9280 199 254 22 chrX 114909190 114910913 -47689017 - L1MA2 LINE L1 -4347 3218 15 546 286 98 32 chrX 114910992 114911369 -47688561 - L1ME3 LINE L1 -256 6142 5741 736 280 74 23 chrX 114911631 114912333 -47687597 - L1ME3 LINE L1 -748 5634 4971 225 282 0 0 chrX 114912327 114912412 -47687518 - L1ME3 LINE L1 -3178 3204 3120 * 735 168 21 0 chrX 114912632 114912775 -47687155 - L1MC3 LINE L1 -1 7784 7639 23 78 0 0 chrX 114913120 114913171 -47686759 + AT_rich Low_complexity Low_complexity 1 51 0 995 276 71 41 chrX 114913174 114913609 -47686321 - LTR16A1 LTR ERVL -2 455 8 6530 225 62 39 chrX 114914036 114917011 -47682919 - L1MD1 LINE L1 -1 6635 1 378 311 109 44 chrX 114917137 114917465 -47682465 - L1ME3 LINE L1 -4540 1842 1387 240 316 71 12 chrX 114917471 114917639 -47682291 - L1ME3 LINE L1 -4885 1487 1310 22 0 0 0 chrX 114917711 114917733 -47682197 + AT_rich Low_complexity Low_complexity 1 22 0 364 309 61 33 chrX 114918157 114918338 -47681592 - L1ME3 LINE L1 -5665 707 522 21 36 0 0 chrX 114918360 114918388 -47681542 + AT_rich Low_complexity Low_complexity 1 28 0 2733 136 30 37 chrX 114919149 114919686 -47680244 - L1MA3 LINE L1 -2 6303 5771 7371 191 19 13 chrX 114919730 114920852 -47679078 - L1PA15 LINE L1 -13 6152 5038 2051 144 0 7 chrX 114920852 114921157 -47678773 - AluSq SINE Alu -8 305 3 7371 191 19 13 chrX 114921157 114921475 -47678455 - L1PA15 LINE L1 -1127 5038 4723 216 0 0 0 chrX 114921475 114921499 -47678431 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7371 191 19 13 chrX 114921499 114922577 -47677353 - L1PA15 LINE L1 -1442 4723 3620 401 145 0 0 chrX 114922579 114922648 -47677282 + L1MA3 LINE L1 6237 6305 0 529 301 52 0 chrX 114922674 114922887 -47677043 + L1P LINE L1 3294 3517 -2629 3211 202 73 28 chrX 114922890 114923819 -47676111 - L1 LINE L1 -2047 5518 4548 2306 71 14 0 chrX 114923834 114924140 -47675790 - AluSp SINE Alu 0 310 1 3396 87 2 43 chrX 114924140 114924522 -47675408 - L1PB1 LINE L1 -6 6145 5788 2283 116 10 0 chrX 114924522 114924832 -47675098 - AluSq SINE Alu 0 313 1 3396 87 2 43 chrX 114924832 114924964 -47674966 - L1PB1 LINE L1 -363 5788 5652 42648 37 22 1 chrX 114924966 114930980 -47668950 - L1PA3 LINE L1 -11 6144 1 2204 250 27 15 chrX 114930980 114931713 -47668217 - L1 LINE L1 -2985 4580 3839 * 17439 167 25 43 chrX 114931699 114933385 -47666545 - L1 LINE L1 -4098 3467 1871 198 0 0 0 chrX 114933385 114933407 -47666523 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 17439 167 25 43 chrX 114933407 114935097 -47664833 - L1 LINE L1 -5694 1871 152 25 31 0 0 chrX 114935108 114935140 -47664790 + AT_rich Low_complexity Low_complexity 1 32 0 248 346 69 22 chrX 114935427 114935585 -47664345 + MIR SINE MIR 3 165 -57 1900 162 76 29 chrX 114935696 114936229 -47663701 - MLT2A2 LTR ERVL 0 554 1 376 276 172 7 chrX 114936364 114936509 -47663421 + MER5A DNA MER1_type 20 188 -1 445 144 41 0 chrX 114937110 114937207 -47662723 + CT-rich Low_complexity Low_complexity 2 102 0 211 288 0 15 chrX 114937654 114937720 -47662210 - L2 LINE L2 -3 3310 3246 486 269 21 56 chrX 114938073 114938254 -47661676 - MER5A DNA MER1_type 0 189 1 1372 53 0 0 chrX 114938879 114938891 -47661039 + L1P LINE L1 3492 3503 -2643 13632 48 2 1 chrX 114938891 114941374 -47658556 - L1PA4 LINE L1 0 6155 3666 1372 53 0 0 chrX 114941374 114941530 -47658400 + L1PA4 LINE L1 3502 3660 -2486 1571 207 46 14 chrX 114941639 114941987 -47657943 + MLT1A1 LTR MaLR 7 365 0 243 207 27 0 chrX 114942352 114942429 -47657501 - MLT1G1 LTR MaLR -7 588 456 4975 113 13 114 chrX 114942463 114942818 -47657112 - MSTB-int LTR MaLR -688 892 503 1870 166 3 0 chrX 114942818 114943119 -47656811 - AluSx SINE Alu -6 306 5 4975 113 13 114 chrX 114943119 114943755 -47656175 - MSTB-int LTR MaLR -1077 503 1 305 193 0 0 chrX 114943755 114943812 -47656118 - MSTB LTR MaLR 0 426 370 1472 190 39 9 chrX 114943815 114944152 -47655778 + L1MB7 LINE L1 5288 5634 -544 243 0 0 0 chrX 114944154 114944181 -47655749 + (TG)n Simple_repeat Simple_repeat 2 28 0 1504 240 15 0 chrX 114944199 114944528 -47655402 - MER2 DNA MER2_type 0 345 12 248 111 0 0 chrX 114944536 114944581 -47655349 - LTR66 LTR ERVL -172 438 394 230 156 0 0 chrX 114944541 114944586 -47655344 + LTR66 LTR ERVL 394 438 -172 * 210 208 0 0 chrX 114944586 114944634 -47655296 + (CA)n Simple_repeat Simple_repeat 1 48 0 1861 243 14 10 chrX 114944676 114945162 -47654768 + L1MB7 LINE L1 5663 6150 -34 24 0 0 0 chrX 114945169 114945193 -47654737 + AT_rich Low_complexity Low_complexity 1 24 0 605 316 90 12 chrX 114945210 114945609 -47654321 + L1M4 LINE L1 3000 3429 -2717 344 253 35 65 chrX 114945683 114945853 -47654077 + L1ME3A LINE L1 5954 6118 -52 23 0 0 0 chrX 114945880 114945903 -47654027 + AT_rich Low_complexity Low_complexity 1 23 0 1219 112 76 5 chrX 114945907 114946131 -47653799 + L1MA9 LINE L1 6072 6311 -1 1314 291 56 29 chrX 114946439 114947095 -47652835 - L1MC4a LINE L1 -1878 5930 5257 438 337 59 43 chrX 114947463 114947750 -47652180 - L1MC4a LINE L1 -1296 4850 4552 1418 178 7 4 chrX 114947750 114948020 -47651910 - L1MB2 LINE L1 -3 6168 5898 438 337 59 43 chrX 114948020 114948192 -47651738 - L1MC4a LINE L1 -1594 4552 4384 1086 258 60 5 chrX 114948199 114948583 -47651347 - L1MC4a LINE L1 -2166 3980 3576 2126 98 0 3 chrX 114948721 114949071 -47650859 + AluSx SINE Alu 1 349 0 26 50 0 0 chrX 114950597 114950637 -47649293 + AT_rich Low_complexity Low_complexity 1 40 0 21230 191 30 30 chrX 114950874 114957347 -47642583 - L1PA10 LINE L1 0 6483 1 1357 148 62 29 chrX 114958098 114958301 -47641629 + MSTB LTR MaLR 176 390 -36 2030 157 0 0 chrX 114958301 114958594 -47641336 - AluSx SINE Alu -19 293 1 1357 148 62 29 chrX 114958594 114958633 -47641297 + MSTB LTR MaLR 390 426 0 193 356 35 9 chrX 114959102 114959217 -47640713 + L2 LINE L2 2301 2418 -896 465 300 12 82 chrX 114959264 114959507 -47640423 + L3 LINE CR1 778 1003 -574 863 231 36 54 chrX 114959575 114959852 -47640078 + MSTD LTR MaLR 1 272 -124 3382 98 0 2 chrX 115159852 115160334 -47439596 - L1P LINE L1 -1101 5045 4565 5125 109 5 1 chrX 115160335 115161097 -47438833 + L1P LINE L1 2273 3037 -3109 5803 145 4 3 chrX 115161119 115162253 -47437677 - L1PB1 LINE L1 -8 6143 5009 5969 249 14 18 chrX 115162356 115163442 -47436488 + L1 LINE L1 3239 4327 -1819 1774 102 0 0 chrX 115163442 115163677 -47436253 - AluY SINE Alu 0 311 77 5969 249 14 18 chrX 115163677 115163733 -47436197 + L1 LINE L1 4327 4382 -1764 2661 46 0 0 chrX 115163733 115164058 -47435872 + L1PA3 LINE L1 5830 6154 -1 5969 249 14 18 chrX 115164058 115164591 -47435339 + L1 LINE L1 4382 4909 -1237 1598 260 70 14 chrX 115164691 115165338 -47434592 + L1M4 LINE L1 3862 4544 -1602 4614 245 123 15 chrX 115165464 115166665 -47433265 + L1M1 LINE L1 12 1342 -6223 227 195 0 0 chrX 115166692 115166733 -47433197 - Tigger3(Golem) DNA MER2_type -2924 105 65 4159 160 71 26 chrX 115166740 115167689 -47432241 - L1PB4 LINE L1 -13 6143 5153 5523 124 18 30 chrX 115168798 115168821 -47431109 - L1PA13 LINE L1 0 6163 6141 2087 99 7 33 chrX 115168821 115169123 -47430807 + AluSc SINE Alu 1 294 -15 5523 124 18 30 chrX 115169123 115169980 -47429950 - L1PA13 LINE L1 -22 6141 5309 2153 60 8 0 chrX 115169980 115170248 -47429682 - AluY SINE Alu -1 310 41 5523 124 18 30 chrX 115170248 115170955 -47428975 - L1PA13 LINE L1 -854 5309 4595 7017 54 1 6 chrX 115171060 115171917 -47428013 - HERV17 LTR ERV1 -4658 3968 3116 1689 30 0 10 chrX 115171931 115172132 -47427798 + HERV17 LTR ERV1 4002 4200 -4426 2300 118 7 50 chrX 115172153 115172575 -47427355 - L1PA13 LINE L1 -2514 3632 3229 283 287 0 96 chrX 115172621 115172715 -47427215 - L2 LINE L2 -181 3091 3007 186 71 0 0 chrX 115173037 115173065 -47426865 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 5482 132 36 0 chrX 115173071 115174036 -47425894 - L1PA16 LINE L1 -9 6157 5175 6152 67 8 0 chrX 115174143 115174939 -47424991 + L1PA7 LINE L1 5345 6146 -8 608 313 33 33 chrX 115174947 115175158 -47424772 - LTR16C LTR ERVL -82 409 196 1622 184 53 99 chrX 115175158 115175685 -47424245 - MLT1D LTR MaLR 0 505 3 608 313 33 33 chrX 115175685 115175716 -47424214 - LTR16C LTR ERVL -294 197 167 246 348 0 45 chrX 115175768 115175857 -47424073 + L2 LINE L2 325 409 -2905 504 378 46 0 chrX 115175957 115176195 -47423735 + MIR SINE MIR 9 257 -5 230 365 129 37 chrX 115176400 115176942 -47422988 + L2 LINE L2 845 1436 -1878 332 245 0 43 chrX 115177088 115177182 -47422748 - L1MC4 LINE L1 -1339 6703 6614 216 184 0 0 chrX 115177188 115177237 -47422693 + (TA)n Simple_repeat Simple_repeat 2 50 0 1462 227 15 60 chrX 115177244 115177626 -47422304 - L1P4 LINE L1 -476 5698 5338 2138 109 0 0 chrX 115177626 115177949 -47421981 - AluSx SINE Alu 0 323 1 1462 227 15 60 chrX 115177949 115178152 -47421778 - L1P4 LINE L1 -836 5338 5128 28 79 0 0 chrX 115178197 115178260 -47421670 + AT_rich Low_complexity Low_complexity 1 63 0 1066 180 14 0 chrX 115178261 115178478 -47421452 - L1MA8 LINE L1 -13 6278 6059 333 309 73 115 chrX 115178645 115179027 -47420903 - L3 LINE CR1 -97 1480 1115 858 167 7 0 chrX 115179044 115179182 -47420748 - AluJb SINE Alu -45 267 129 6889 132 28 16 chrX 115179358 115180521 -47419409 - L1P LINE L1 -1434 4712 3535 2093 204 40 24 chrX 115180518 115180968 -47418962 + L1M1 LINE L1 873 1329 -6236 * 5494 170 45 4 chrX 115180963 115182682 -47417248 - L1MA2 LINE L1 -37 6267 4485 429 242 0 11 chrX 115182795 115182886 -47417044 + L1P3 LINE L1 87 176 -5699 1796 319 82 19 chrX 115183283 115184305 -47415625 - L1M3a LINE L1 -5166 789 2 2020 272 20 31 chrX 115184332 115184427 -47415503 - L1M4 LINE L1 -2095 4051 3956 237 33 0 0 chrX 115184427 115184457 -47415473 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2020 272 20 31 chrX 115184457 115185218 -47414712 - L1M4 LINE L1 -2190 3956 3205 11385 106 143 32 chrX 115185318 115187381 -47412549 - L1PBa LINE L1 -3938 2925 635 947 189 11 0 chrX 115187387 115187578 -47412352 - L1PBa LINE L1 -6670 193 1 963 155 6 0 chrX 115187586 115187754 -47412176 - L1M4 LINE L1 -678 5500 5332 254 329 25 13 chrX 115188397 115188476 -47411454 - L3 LINE CR1 -108 1469 1390 22 35 0 0 chrX 115188958 115188987 -47410943 + AT_rich Low_complexity Low_complexity 1 29 0 833 241 63 14 chrX 115190430 115190637 -47409293 + MER58A DNA MER1_type 6 222 -2 480 287 16 23 chrX 115190662 115190791 -47409139 + L2 LINE L2 3186 3313 0 1994 241 37 12 chrX 115191414 115192065 -47407865 + L1M4 LINE L1 3658 4324 -1822 644 263 34 0 chrX 115192049 115192224 -47407706 + L1M4 LINE L1 4728 4908 -1238 * 2390 259 88 28 chrX 115192402 115193199 -47406731 + L1PA13 LINE L1 1 845 -5942 4473 188 28 59 chrX 115193202 115194138 -47405792 + HUERS-P2 LTR ERV1 441 1347 -1741 3237 26 0 0 chrX 115194138 115194518 -47405412 + L1PA4 LINE L1 5773 6152 -3 1035 270 24 4 chrX 115194530 115194778 -47405152 + MER93a LTR ERV1 120 372 -30 1305 157 100 0 chrX 115194796 115195025 -47404905 + HUERS-P2 LTR ERV1 1339 1590 -1498 2051 155 27 3 chrX 115195025 115195360 -47404570 - MER61A LTR ERV1 0 343 1 25305 109 32 16 chrX 115195360 115195975 -47403955 - MER61A-int LTR ERV1 0 5217 4613 2107 79 43 18 chrX 115195975 115196255 -47403675 + AluSg SINE Alu 1 287 -23 25305 109 32 16 chrX 115196255 115199935 -47399995 - MER61A-int LTR ERV1 -604 4613 1 371 169 0 0 chrX 115199935 115199994 -47399936 - MER61A LTR ERV1 0 343 285 * 615 189 0 0 chrX 115199986 115200092 -47399838 - MER61A LTR ERV1 -237 106 1 6923 139 11 4 chrX 115200092 115201122 -47398808 + HUERS-P2 LTR ERV1 1587 2623 -465 187 343 65 19 chrX 115201517 115201625 -47398305 + L2 LINE L2 3158 3270 -2 3385 208 4 3 chrX 115202417 115203125 -47396805 - L1P LINE L1 -935 5211 4503 * 4799 185 52 0 chrX 115203123 115203933 -47395997 - L1PA12 LINE L1 -5648 1933 1082 7371 235 49 16 chrX 115203939 115205619 -47394311 - ERVL-B3 LTR ERVL -4000 1764 28 369 0 0 0 chrX 115205631 115205672 -47394258 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 2372 260 12 4 chrX 115205673 115206166 -47393764 - MLT2B3 LTR ERVL -52 502 6 294 269 0 0 chrX 115206182 115206260 -47393670 + A-rich Low_complexity Low_complexity 1 78 0 2851 83 17 72 chrX 115207668 115208095 -47391835 + MLT2A1 LTR ERVL 1 403 -41 369 0 0 0 chrX 115208095 115208136 -47391794 + (CA)n Simple_repeat Simple_repeat 2 42 0 2851 83 17 72 chrX 115208136 115208167 -47391763 + MLT2A1 LTR ERVL 403 434 -10 22 0 0 0 chrX 115208545 115208567 -47391363 + AT_rich Low_complexity Low_complexity 1 22 0 579 241 178 9 chrX 115208979 115209246 -47390684 - L1P4 LINE L1 -364 5801 5488 254 319 55 27 chrX 115209256 115209585 -47390345 - L1M4 LINE L1 -786 5360 5023 388 287 13 13 chrX 115209765 115209915 -47390015 - L1M4 LINE L1 -1246 4900 4751 22 70 0 0 chrX 115210066 115210109 -47389821 + AT_rich Low_complexity Low_complexity 1 43 0 229 307 104 61 chrX 115210370 115210533 -47389397 + MIR3 SINE MIR 32 201 -7 999 121 7 0 chrX 115210638 115210779 -47389151 - AluSq/x SINE Alu -170 143 2 1479 106 22 0 chrX 115210874 115211100 -47388830 - L1MA6 LINE L1 -5 6295 6065 204 185 37 0 chrX 115211129 115211183 -47388747 + A-rich Low_complexity Low_complexity 5 60 0 471 35 0 0 chrX 115212897 115212954 -47386976 + (CA)n Simple_repeat Simple_repeat 2 58 0 2193 106 3 0 chrX 115213222 115213515 -47386415 + AluSp SINE Alu 1 294 -19 2380 185 29 2 chrX 115214327 115214807 -47385123 - L1MB7 LINE L1 -19 6881 6389 11002 211 20 7 chrX 115214979 115216486 -47383444 - L1MB7 LINE L1 -1321 5541 3986 2412 88 0 3 chrX 115216486 115216791 -47383139 - AluY SINE Alu -7 304 1 11002 211 20 7 chrX 115216791 115217874 -47382056 - L1MB7 LINE L1 -2876 3986 2918 857 166 0 14 chrX 115217874 115218019 -47381911 - FLAM_C SINE Alu 0 143 1 8491 183 65 12 chrX 115218019 115218176 -47381754 - L1PBa LINE L1 -3931 2932 2785 2174 132 3 0 chrX 115218176 115218480 -47381450 - AluSp SINE Alu -8 305 1 8491 183 65 12 chrX 115218480 115220963 -47378967 - L1PBa LINE L1 -4078 2785 8 32 67 0 0 chrX 115221233 115221293 -47378637 + AT_rich Low_complexity Low_complexity 1 60 0 15777 48 33 5 chrX 115222066 115224023 -47375907 + HERV17 LTR ERV1 4009 6019 -2607 2339 69 3 0 chrX 115224034 115224335 -47375595 + HERV17 LTR ERV1 6836 8626 0 2688 49 3 0 chrX 115224335 115224660 -47375270 + LTR17 LTR ERV1 1 326 -454 198 103 0 0 chrX 115224660 115224689 -47375241 + (A)n Simple_repeat Simple_repeat 1 29 0 8380 83 24 23 chrX 115224689 115224836 -47375094 + L1P LINE L1 3606 3751 -2395 2078 127 0 0 chrX 115224836 115225119 -47374811 + AluSc SINE Alu 1 283 -26 8380 83 24 23 chrX 115225119 115226204 -47373726 + L1P LINE L1 3751 4839 -1307 315 316 38 38 chrX 115226227 115226360 -47373570 + L2 LINE L2 3179 3311 -2 4834 142 36 9 chrX 115226685 115227767 -47372163 + L1PA16 LINE L1 5062 6166 0 21 57 0 0 chrX 115227888 115227923 -47372007 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chrX 115228097 115228132 -47371798 + AT_rich Low_complexity Low_complexity 1 35 0 1122 192 38 108 chrX 115228457 115228875 -47371055 + MLT2D LTR ERVL 1 534 -20 260 217 0 0 chrX 115228891 115228951 -47370979 + (TA)n Simple_repeat Simple_repeat 1 60 0 260 141 31 0 chrX 115229016 115229080 -47370850 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 284 291 29 58 chrX 115229858 115229961 -47369969 - MIR SINE MIR -114 148 49 1480 268 28 23 chrX 115230669 115231098 -47368832 + MER70A LTR ERVL 1 431 -41 345 182 13 39 chrX 115231569 115231646 -47368284 + MIR3 SINE MIR 125 199 -9 1413 189 3 11 chrX 115231777 115232063 -47367867 - L1P LINE L1 -873 5273 4990 276 152 0 0 chrX 115232063 115232109 -47367821 + L1P LINE L1 4950 4995 -1151 * 1774 212 29 5 chrX 115232107 115232556 -47367374 - L1M4 LINE L1 -797 5349 4890 226 250 0 0 chrX 115232567 115232623 -47367307 + MLT1A1 LTR MaLR 293 348 -17 2294 92 7 0 chrX 115233036 115233330 -47366600 + AluSg SINE Alu 1 296 -14 217 288 162 27 chrX 115233342 115233453 -47366477 - L2 LINE L2 -4 3268 3143 27 62 0 0 chrX 115234101 115234149 -47365781 + AT_rich Low_complexity Low_complexity 1 48 0 2266 124 8 6 chrX 115234170 115234524 -47365406 + THE1A LTR MaLR 1 355 0 10889 106 19 3 chrX 115234524 115236080 -47363850 + THE1A-int LTR MaLR 1 1580 0 2178 120 20 8 chrX 115236080 115236431 -47363499 + THE1A LTR MaLR 1 355 0 23 0 0 0 chrX 115237224 115237247 -47362683 + AT_rich Low_complexity Low_complexity 1 23 0 299 233 68 82 chrX 115237351 115237497 -47362433 + L2 LINE L2 3138 3281 -32 253 316 0 13 chrX 115239441 115239517 -47360413 + Charlie4 DNA MER1_type 1883 1957 -4 21 57 0 0 chrX 115240014 115240049 -47359881 + AT_rich Low_complexity Low_complexity 1 35 0 2212 86 0 7 chrX 115240052 115240342 -47359588 - AluSc SINE Alu -21 288 1 197 200 0 114 chrX 115240453 115240523 -47359407 + MIR SINE MIR 201 262 0 22 0 0 0 chrX 115240717 115240739 -47359191 + AT_rich Low_complexity Low_complexity 1 22 0 1743 84 11 42 chrX 115242816 115243102 -47356828 - L1PA11 LINE L1 0 6174 5898 3659 160 31 66 chrX 115243432 115244245 -47355685 + LTR1 LTR ERV1 2 785 0 400 356 59 15 chrX 115244437 115244639 -47355291 - L2 LINE L2 -1 3312 3102 280 314 206 27 chrX 115244736 115244959 -47354971 - L2 LINE L2 -948 2366 2104 1216 178 0 12 chrX 115245177 115245419 -47354511 - L1MB3 LINE L1 -2 6181 5943 4229 200 30 3 chrX 115245624 115246880 -47353050 - L1MC1 LINE L1 -257 6076 4785 521 275 0 0 chrX 115246888 115246997 -47352933 - FLAM_A SINE Alu -27 115 7 1693 234 32 73 chrX 115247006 115247763 -47352167 - L1MC1 LINE L1 -1345 4801 4076 3614 153 27 32 chrX 115247785 115248492 -47351438 - L1MA2 LINE L1 0 6304 5602 3244 163 23 17 chrX 115248594 115249497 -47350433 - L1 LINE L1 -3657 3908 2997 8597 220 24 15 chrX 115249500 115251266 -47348664 - L1 LINE L1 -5451 2114 334 * 14439 219 77 20 chrX 115251263 115253847 -47346083 - L1P4 LINE L1 -713 6101 3115 1871 161 134 13 chrX 115253847 115254227 -47345703 - MSTA LTR MaLR 0 428 3 14439 219 77 20 chrX 115254227 115256052 -47343878 - L1P4 LINE L1 -3699 3115 1395 576 341 24 19 chrX 115256056 115256267 -47343663 - L1P4 LINE L1 -5531 1256 1045 * 1772 279 110 11 chrX 115256246 115256967 -47342963 + L1P LINE L1 1889 2680 -3466 13113 192 93 13 chrX 115257067 115259844 -47340086 - L1M1 LINE L1 -4552 3013 14 636 244 51 8 chrX 115259841 115260075 -47339855 - L1MDa LINE L1 -4094 2446 2203 * 2503 246 86 20 chrX 115260084 115261172 -47338758 - L1MDa LINE L1 -4382 2158 1000 616 288 32 32 chrX 115261986 115262299 -47337631 - L1MDa LINE L1 -6146 394 82 29 0 0 0 chrX 115262370 115262399 -47337531 + AT_rich Low_complexity Low_complexity 1 29 0 184 233 23 0 chrX 115262399 115262442 -47337488 - L2 LINE L2 -17 3255 3212 193 234 0 94 chrX 115262960 115263024 -47336906 - L2 LINE L2 -1 3312 3255 1145 165 45 9 chrX 115264565 115264789 -47335141 - L1PB3 LINE L1 -9 6145 5914 289 181 36 0 chrX 115264837 115264920 -47335010 - L1M2 LINE L1 -4068 2781 2696 423 272 16 16 chrX 115264927 115265111 -47334819 + L1M4 LINE L1 2569 2752 -3394 265 180 0 33 chrX 115265130 115265191 -47334739 + L1M4 LINE L1 2847 2905 -3241 3427 44 0 67 chrX 115265195 115265675 -47334255 - LTR7 LTR ERV1 -2 448 1 2326 72 59 13 chrX 115265675 115266048 -47333882 - HERVH LTR ERV1 0 7713 7324 1291 134 18 5 chrX 115266048 115266265 -47333665 - HERVH LTR ERV1 -1894 5819 5600 4134 139 1 1 chrX 115266266 115266928 -47333002 - HERVH LTR ERV1 -2564 5149 4488 3210 119 0 6 chrX 115266930 115267435 -47332495 - HERVH LTR ERV1 -3720 3993 3492 807 131 41 0 chrX 115267425 115267570 -47332360 - HERVH LTR ERV1 -4423 3290 3140 * 18918 97 20 12 chrX 115267549 115270519 -47329411 - HERVH LTR ERV1 -4718 2995 1 3729 33 0 2 chrX 115270521 115270970 -47328960 - LTR7 LTR ERV1 -2 448 1 186 43 0 0 chrX 115271323 115271346 -47328584 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1000 40 0 0 chrX 115271346 115271470 -47328460 - L1PA4 LINE L1 -12 6143 6020 1463 218 36 36 chrX 115271470 115272047 -47327883 + L1M4 LINE L1 2918 3494 -2652 1142 228 19 46 chrX 115272049 115272188 -47327742 + L1M4 LINE L1 4577 4718 -1428 2081 73 7 11 chrX 115272188 115272496 -47327434 + AluY SINE Alu 12 318 0 1142 228 19 46 chrX 115272496 115272771 -47327159 + L1M4 LINE L1 4718 4981 -1165 2516 130 66 2 chrX 115272805 115273229 -47326701 + MLT2A2 LTR ERVL 1 451 -2 3185 117 2 26 chrX 115273231 115273761 -47326169 + HERVL-A2 LTR ERVL 1 517 -5137 226 200 50 0 chrX 115273872 115273932 -47325998 - L1P4 LINE L1 -564 5601 5539 305 360 9 0 chrX 115274620 115274734 -47325196 - L2 LINE L2 -2 3311 3197 491 310 78 16 chrX 115274774 115275086 -47324844 - L2 LINE L2 -236 3036 2705 322 394 32 16 chrX 115275317 115275563 -47324367 + L2 LINE L2 2507 2756 -558 183 337 0 60 chrX 115275726 115275809 -47324121 + L2 LINE L2 2952 3029 -243 180 200 50 33 chrX 115275930 115275990 -47323940 + L2 LINE L2 3168 3228 -85 606 225 32 32 chrX 115276061 115276248 -47323682 - L1PB4 LINE L1 -1 6155 5969 375 86 17 0 chrX 115276242 115276300 -47323630 + L1P5 LINE L1 5666 5724 -432 * 9319 205 23 7 chrX 115276400 115279140 -47320790 + L1PA15-16 LINE L1 251 2694 -4155 293 295 36 24 chrX 115280488 115280723 -47319207 - L1MDb LINE L1 -4758 1624 1279 327 314 51 58 chrX 115280787 115280967 -47318963 - L1MDb LINE L1 -5060 1325 1194 1876 113 24 0 chrX 115280967 115281258 -47318672 - L1MA1 LINE L1 -3 6299 6002 327 314 51 58 chrX 115281258 115281376 -47318554 - L1MDb LINE L1 -5191 1194 1077 35 63 0 0 chrX 115281434 115281497 -47318433 + AT_rich Low_complexity Low_complexity 1 63 0 872 219 16 0 chrX 115281876 115282068 -47317862 - L1PA15 LINE L1 0 6165 5971 1380 170 82 20 chrX 115282068 115282374 -47317556 - THE1C LTR MaLR 0 375 51 1507 231 117 60 chrX 115282417 115283102 -47316828 - MER50 LTR ERV1 0 734 11 237 91 0 0 chrX 115283109 115283142 -47316788 - THE1C LTR MaLR -395 33 1 5150 205 67 3 chrX 115283142 115284269 -47315661 - THE1C-int LTR MaLR 0 1651 453 589 143 0 0 chrX 115284277 115284368 -47315562 - THE1C-int LTR MaLR -1239 341 251 2445 96 93 10 chrX 115284368 115284776 -47315154 + LTR7 LTR ERV1 1 442 -8 17502 108 19 28 chrX 115284785 115287807 -47312123 + HERVH LTR ERV1 1 2995 -4718 955 107 7 0 chrX 115287786 115287936 -47311994 + HERVH LTR ERV1 3140 3290 -4423 * 3155 112 8 6 chrX 115287926 115288427 -47311503 + HERVH LTR ERV1 3492 3993 -3720 1273 89 0 0 chrX 115288429 115288609 -47311321 + HERVH LTR ERV1 4488 4667 -3046 * 4202 81 0 0 chrX 115288608 115289217 -47310713 + HERVH LTR ERV1 5772 6380 -1333 * 7935 86 21 4 chrX 115289190 115290355 -47309575 + HERVH LTR ERV1 6529 7713 0 2533 83 93 7 chrX 115290355 115290763 -47309167 + LTR7 LTR ERV1 1 443 -7 1492 116 24 8 chrX 115290770 115291021 -47308909 - THE1C-int LTR MaLR -1325 255 1 1407 161 56 100 chrX 115291023 115291061 -47308869 - THE1C LTR MaLR -2 373 335 1890 138 0 4 chrX 115291061 115291330 -47308600 + AluSq SINE Alu 8 275 -38 719 84 19 0 chrX 115291332 115291439 -47308491 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 1407 161 56 100 chrX 115291439 115291787 -47308143 - THE1C LTR MaLR -41 334 1 1078 155 11 0 chrX 115291787 115291974 -47307956 - L1PA15 LINE L1 -190 5975 5787 2306 169 0 15 chrX 115292000 115292407 -47307523 + THE1-int LTR MaLR 619 1019 -561 2925 226 17 44 chrX 115292410 115293494 -47306436 - L1PA15 LINE L1 -645 5520 4416 7624 26 1 0 chrX 115293494 115295158 -47304772 - L1PA4 LINE L1 -3 6152 4487 2925 226 17 44 chrX 115295158 115295270 -47304660 - L1PA15 LINE L1 -1749 4416 4302 436 113 62 31 chrX 115295374 115295471 -47304459 + L1M4 LINE L1 5565 5664 -520 6904 63 8 0 chrX 115295478 115296443 -47303487 + L1PA7 LINE L1 5182 6153 -1 909 131 70 5 chrX 115296448 115296628 -47303302 - L1M4 LINE L1 -645 5533 5339 3913 112 49 3 chrX 115296628 115297264 -47302666 - L1PA13 LINE L1 0 6163 5499 397 293 14 43 chrX 115297736 115297876 -47302054 + L1 LINE L1 3312 3447 -2699 3263 143 21 6 chrX 115298230 115298857 -47301073 + L1 LINE L1 4135 4770 -1376 22 56 0 0 chrX 115299309 115299345 -47300585 + AT_rich Low_complexity Low_complexity 1 36 0 237 350 2 11 chrX 115299522 115299624 -47300306 - MIR SINE MIR -93 115 21 217 308 142 12 chrX 115300430 115300599 -47299331 - L2 LINE L2 -11 3302 3112 2088 165 36 30 chrX 115300721 115301267 -47298663 + MLT2A2 LTR ERVL 1 554 0 207 323 31 31 chrX 115302728 115302824 -47297106 - MIR SINE MIR -152 110 15 2560 270 75 27 chrX 115302846 115303900 -47296030 + L1MD2 LINE L1 337 1441 -5280 3754 144 28 44 chrX 115304014 115304791 -47295139 + L1MA5A LINE L1 5388 6152 -145 1095 132 39 24 chrX 115304798 115304905 -47295025 + L1MA5A LINE L1 6085 6198 -99 3964 159 32 22 chrX 115304905 115305620 -47294310 - MER72 LTR ERV1 0 722 1 1095 132 39 24 chrX 115305620 115305717 -47294213 + L1MA5A LINE L1 6198 6292 -5 29 0 0 0 chrX 115305819 115305848 -47294082 + AT_rich Low_complexity Low_complexity 1 29 0 3218 160 27 36 chrX 115307395 115308059 -47291871 + L1PA14 LINE L1 5475 6132 -29 330 161 0 43 chrX 115308068 115308161 -47291769 + L1PA13 LINE L1 6074 6162 -1 3479 198 23 7 chrX 115308166 115308858 -47291072 + ERVL LTR ERVL 1772 2474 -3290 1429 263 39 16 chrX 115308859 115309605 -47290325 + L1MD2 LINE L1 2411 3168 -3372 358 253 0 0 chrX 115309710 115309785 -47290145 - Tigger3(Golem) DNA MER2_type -2953 76 2 3000 233 25 25 chrX 115309801 115310691 -47289239 + L1MD2 LINE L1 5648 6537 -216 310 291 26 26 chrX 115310690 115310841 -47289089 + L1MD3 LINE L1 7832 7982 -13 * 259 213 25 11 chrX 115310932 115311043 -47288887 + L1ME LINE L1 871 988 -5082 406 301 35 60 chrX 115311146 115311280 -47288650 + L1ME LINE L1 982 1111 -4971 1381 222 84 47 chrX 115311280 115311730 -47288200 - MLT1C LTR MaLR 0 467 1 406 301 35 60 chrX 115311730 115311794 -47288136 + L1ME LINE L1 1111 1175 -4907 856 282 24 39 chrX 115311805 115312142 -47287788 + L1M4 LINE L1 490 821 -5721 24 32 0 0 chrX 115312142 115312173 -47287757 + AT_rich Low_complexity Low_complexity 1 31 0 546 172 40 33 chrX 115312182 115312333 -47287597 + L1M4 LINE L1 821 972 -5570 623 120 120 8 chrX 115312338 115312471 -47287459 + L1M4 LINE L1 4651 4798 -1348 699 200 0 22 chrX 115312473 115312608 -47287322 + FLAM_C SINE Alu 4 135 -8 1573 120 3 22 chrX 115312622 115312999 -47286931 + MLT2A2 LTR ERVL 6 453 0 816 172 0 46 chrX 115312999 115313150 -47286780 + AluJb SINE Alu 138 281 -31 249 33 0 0 chrX 115313151 115313181 -47286749 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1324 249 60 7 chrX 115313183 115313617 -47286313 + L1M4 LINE L1 4787 5243 -903 2152 101 16 3 chrX 115313624 115313930 -47286000 - MER41A LTR ERV1 -7 547 238 2684 244 11 8 chrX 115313930 115314695 -47285235 + L1PB1 LINE L1 3087 3853 -2293 5952 155 12 7 chrX 115314795 115316400 -47283530 + L1PB1 LINE L1 4536 6146 -5 1143 58 0 26 chrX 115316683 115316838 -47283092 - L1PA5 LINE L1 -562 5592 5442 4433 48 2 4 chrX 115316838 115317395 -47282535 + L1PA5 LINE L1 5596 6151 -3 2569 256 55 8 chrX 115317396 115318377 -47281553 + L1 LINE L1 1971 2992 -3154 4629 158 1 23 chrX 115368379 115369248 -47230682 + L1P LINE L1 4221 5070 -1076 229 278 113 9 chrX 115369264 115369379 -47230551 - MLT1C LTR MaLR -143 324 198 * 540 216 26 0 chrX 115369377 115369493 -47230437 - THE1B LTR MaLR -48 316 198 6289 93 9 3 chrX 115369496 115370565 -47229365 + L1PA10 LINE L1 5079 6152 -16 25 0 0 0 chrX 115370565 115370590 -47229340 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chrX 115370903 115370926 -47229004 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 210 284 21 95 chrX 115371417 115371607 -47228323 - L2 LINE L2 -2 3311 3136 374 297 29 22 chrX 115372801 115372939 -47226991 - MIR SINE MIR 0 262 124 1397 249 84 19 chrX 115373602 115374076 -47225854 - MLT1D LTR MaLR 0 505 1 250 288 148 41 chrX 115374326 115374569 -47225361 + L2 LINE L2 2828 3096 -176 2123 203 38 38 chrX 115374678 115375175 -47224755 + MLT1D LTR MaLR 1 497 -8 5144 161 6 10 chrX 115375396 115376294 -47223636 - L1MA4 LINE L1 -6 6294 5401 464 120 0 0 chrX 115376291 115376366 -47223564 + L1M LINE L1 5336 5410 -890 * 302 288 0 0 chrX 115377393 115377459 -47222471 - L2 LINE L2 -6 3307 3242 306 223 107 18 chrX 115377685 115377797 -47222133 + L1ME4a LINE L1 5799 5920 -201 22 88 0 0 chrX 115377930 115377987 -47221943 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chrX 115378442 115378464 -47221466 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chrX 115378471 115378521 -47221409 + AT_rich Low_complexity Low_complexity 1 50 0 1519 155 0 4 chrX 115378705 115378937 -47220993 + AluSx SINE Alu 24 254 -58 2206 116 0 0 chrX 115378976 115379277 -47220653 + AluSx SINE Alu 2 302 -10 33 56 0 0 chrX 115379506 115379560 -47220370 + AT_rich Low_complexity Low_complexity 1 54 0 392 298 63 6 chrX 115380684 115380842 -47219088 - MIR SINE MIR -50 212 46 189 250 83 0 chrX 115380909 115380957 -47218973 + L2 LINE L2 3205 3256 -16 2686 173 59 20 chrX 115380977 115381538 -47218392 + L1MB7 LINE L1 5379 5961 -223 1390 217 120 3 chrX 115381568 115382021 -47217909 + L1M4 LINE L1 5213 5725 -459 2349 169 62 8 chrX 115382024 115382538 -47217392 + L1MB7 LINE L1 5624 6165 -19 14968 96 12 2 chrX 115382801 115385584 -47214346 - L1PA7 LINE L1 -225 5929 3116 4337 77 14 2 chrX 115385582 115386449 -47213481 + L1PA7 LINE L1 4959 5832 -322 * 607 61 0 0 chrX 115386449 115386527 -47213403 + L1PA7 LINE L1 6072 6153 -1 410 143 26 0 chrX 115387137 115387214 -47212716 - L1MB8 LINE L1 -5 6173 6095 4930 205 17 9 chrX 115387810 115389619 -47210311 - L1PA15 LINE L1 -1 6164 4222 502 269 25 5 chrX 115389642 115389839 -47210091 - L1M4 LINE L1 -3694 2452 2252 1917 164 64 3 chrX 115389841 115390231 -47209699 + L1MA9 LINE L1 5898 6311 -1 22 56 0 0 chrX 115390682 115390718 -47209212 + AT_rich Low_complexity Low_complexity 1 36 0 2467 178 2 0 chrX 115391005 115391421 -47208509 - MER47B DNA MER2_type 0 418 2 22379 112 5 6 chrX 115392432 115395855 -47204075 + L1P LINE L1 1556 4975 -1171 275 310 10 50 chrX 115396913 115397013 -47202917 - MIR3 SINE MIR -28 180 85 3321 37 0 0 chrX 115397024 115397426 -47202504 - L1PA2 LINE L1 0 6155 5754 290 396 43 14 chrX 115397566 115397705 -47202225 + L2 LINE L2 3125 3267 -5 1346 289 35 26 chrX 115397731 115398222 -47201708 + L1MC4a LINE L1 5416 5910 -1898 369 318 81 64 chrX 115398346 115398616 -47201314 + L1MC4a LINE L1 6100 6381 -1427 2801 70 11 5 chrX 115398616 115398988 -47200942 + L1PA7 LINE L1 5778 6151 -3 369 318 81 64 chrX 115398988 115399123 -47200807 + L1MC4a LINE L1 6381 6512 -1296 1903 130 17 14 chrX 115399125 115399438 -47200492 + AluSx SINE Alu 1 314 0 1016 195 30 24 chrX 115399529 115399773 -47200157 + L1MA9 LINE L1 5987 6234 -66 617 143 38 38 chrX 115399778 115399911 -47200019 + L1MA9 LINE L1 6180 6312 0 915 201 54 72 chrX 115399943 115400165 -47199765 + L1MC5 LINE L1 6878 7094 -867 2082 130 0 3 chrX 115400165 115400465 -47199465 + AluSq SINE Alu 1 299 -14 915 201 54 72 chrX 115400465 115400575 -47199355 + L1MC5 LINE L1 7094 7204 -757 185 282 84 0 chrX 115400599 115400670 -47199260 + MIR SINE MIR 181 257 -5 649 248 81 0 chrX 115401001 115401199 -47198731 + L1MC5 LINE L1 7688 7901 -60 505 318 119 0 chrX 115401826 115401977 -47197953 - MER91A DNA MER1_type -27 169 1 1124 209 0 14 chrX 115402178 115402389 -47197541 + MER20 DNA MER1_type 12 219 0 1874 156 21 44 chrX 115403071 115403455 -47196475 + THE1C LTR MaLR 1 375 0 381 352 80 8 chrX 115403746 115403996 -47195934 + HAL1b LINE L1 458 725 -623 1945 132 40 9 chrX 115404057 115404405 -47195525 + L1MA5 LINE L1 5936 6294 -6 341 340 76 52 chrX 115404526 115405024 -47194906 - L2 LINE L2 -133 3180 2661 226 279 84 59 chrX 115405116 115405293 -47194637 + L1M4 LINE L1 3652 3823 -2323 24239 51 3 0 chrX 115405293 115409178 -47190752 + L1PA4 LINE L1 2274 6155 0 226 279 84 59 chrX 115409178 115409358 -47190572 + L1M4 LINE L1 3823 4018 -2128 415 146 61 0 chrX 115409422 115409504 -47190426 + L1MA5 LINE L1 6203 6289 -11 28 0 0 0 chrX 115409504 115409532 -47190398 + AT_rich Low_complexity Low_complexity 1 28 0 425 246 70 49 chrX 115409551 115409693 -47190237 - MIR SINE MIR -9 253 109 447 290 120 49 chrX 115409817 115410351 -47189579 + L1M4 LINE L1 4459 5030 -1116 256 257 0 43 chrX 115410540 115410610 -47189320 + MIR SINE MIR 74 140 -68 625 157 93 0 chrX 115410894 115411002 -47188928 + FLAM_C SINE Alu 3 120 -13 23 33 0 0 chrX 115411280 115411310 -47188620 + AT_rich Low_complexity Low_complexity 1 30 0 500 286 81 28 chrX 115411746 115411994 -47187936 - MIR SINE MIR -1 261 1 2347 147 45 24 chrX 115412024 115412447 -47187483 + MER61C LTR ERV1 3 434 0 7613 116 68 121 chrX 115412461 115414178 -47185752 + MER61C-int LTR ERV1 14 1639 -3578 * 20573 107 25 19 chrX 115414166 115417372 -47182558 + MER61C-int LTR ERV1 1980 5206 -11 2137 137 112 8 chrX 115417384 115417777 -47182153 + MER61C LTR ERV1 1 434 0 345 75 0 0 chrX 115417923 115417976 -47181954 + (TG)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chrX 115418130 115418153 -47181777 + AT_rich Low_complexity Low_complexity 1 23 0 323 223 21 32 chrX 115418416 115418510 -47181420 - MIR SINE MIR -50 212 120 10016 29 0 0 chrX 115418562 115419750 -47180180 - L1PA3 LINE L1 -1511 4635 3448 7861 17 0 0 chrX 115419750 115421271 -47178659 + L1PA3 LINE L1 4635 6155 0 467 301 146 18 chrX 115421661 115421887 -47178043 + MIR SINE MIR 8 262 0 246 237 127 42 chrX 115422319 115422437 -47177493 + MIR SINE MIR 105 232 -30 14486 133 27 5 chrX 115422660 115425022 -47174908 + Tigger1 DNA MER2_type 4 2418 0 1916 132 0 0 chrX 115425223 115425518 -47174412 + AluSx SINE Alu 11 305 0 506 283 75 5 chrX 115425530 115425717 -47174213 - MIR SINE MIR -10 252 53 575 313 122 9 chrX 115426921 115427151 -47172779 - MIR SINE MIR -1 261 6 19102 182 46 17 chrX 115427292 115429498 -47170432 + L1MA2 LINE L1 12 2153 -5412 3829 26 2 2 chrX 115429498 115429956 -47169974 + L1PA4 LINE L1 5696 6153 -2 19102 182 46 17 chrX 115429956 115430365 -47169565 + L1MA2 LINE L1 2153 2549 -5016 2325 93 0 0 chrX 115430365 115430667 -47169263 + AluY SINE Alu 1 302 -9 19102 182 46 17 chrX 115430667 115431985 -47167945 + L1MA2 LINE L1 2549 3828 -3737 3323 74 41 0 chrX 115431985 115432024 -47167906 - MLT2A2 LTR ERVL 0 453 417 302 24 48 0 chrX 115432024 115432066 -47167864 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 3323 74 41 0 chrX 115432066 115432461 -47167469 - MLT2A2 LTR ERVL -36 417 1 19102 182 46 17 chrX 115432461 115432876 -47167054 + L1MA2 LINE L1 3828 4230 -3335 1386 174 75 11 chrX 115432876 115433158 -47166772 + AluJb SINE Alu 3 302 -10 19102 182 46 17 chrX 115433158 115433766 -47166164 + L1MA2 LINE L1 4230 5114 -2451 380 202 10 19 chrX 115433925 115434029 -47165901 + L1M LINE L1 5319 5421 -884 1357 287 15 30 chrX 115434364 115434900 -47165030 + L1 LINE L1 3204 3731 -2415 * 5821 131 33 21 chrX 115434888 115435938 -47163992 + L1MA2 LINE L1 6642 7678 -45 2385 149 3 3 chrX 115435938 115436300 -47163630 + THE1B LTR MaLR 3 364 0 9849 120 30 39 chrX 115436300 115437895 -47162035 + THE1B-int LTR MaLR 1 1580 0 2635 113 0 0 chrX 115437895 115438259 -47161671 + THE1B LTR MaLR 1 364 0 5821 131 33 21 chrX 115438259 115438289 -47161641 + L1MA2 LINE L1 7677 7722 -1 228 333 79 53 chrX 115438984 115439173 -47160757 + L2 LINE L2 2752 2945 -369 * 553 299 51 15 chrX 115439171 115439368 -47160562 - L2 LINE L2 -5 3308 3105 314 287 109 52 chrX 115439440 115439577 -47160353 + L2 LINE L2 3008 3165 -148 2066 132 0 7 chrX 115439577 115439880 -47160050 + AluSx SINE Alu 1 301 -11 314 287 109 52 chrX 115439880 115439972 -47159958 + L2 LINE L2 3165 3250 -63 525 233 173 7 chrX 115440599 115440749 -47159181 - MER5A DNA MER1_type -6 183 9 806 154 9 164 chrX 115440758 115441149 -47158781 + MER33 DNA MER1_type 1 363 0 3083 151 19 19 chrX 115441298 115442055 -47157875 - L1P5 LINE L1 -367 5789 5026 2492 187 5 38 chrX 115442057 115442641 -47157289 + L1 LINE L1 3477 4041 -2105 2974 195 48 1 chrX 115442647 115443294 -47156636 + L1 LINE L1 4355 5031 -1115 818 185 62 0 chrX 115443527 115443705 -47156225 + MER53 DNA DNA 1 189 0 21 82 0 0 chrX 115444242 115444291 -47155639 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chrX 115445096 115445135 -47154795 + AT_rich Low_complexity Low_complexity 1 39 0 194 219 16 0 chrX 115445168 115445232 -47154698 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 1894 166 2 44 chrX 115445426 115445837 -47154093 - L1MA9 LINE L1 -1 6311 5918 1964 119 95 24 chrX 115445837 115446174 -47153756 - THE1B LTR MaLR 0 364 4 9175 108 26 14 chrX 115446177 115447504 -47152426 - THE1B-int LTR MaLR 0 1580 237 1631 216 14 22 chrX 115447502 115447873 -47152057 - L1M3e LINE L1 -6658 372 5 * 246 301 11 6 chrX 115447882 115447971 -47151959 - MER21B LTR ERV1 -500 431 289 719 168 32 0 chrX 115448040 115448195 -47151735 + L1MA5 LINE L1 1816 1975 -4814 * 3057 168 30 17 chrX 115448165 115448691 -47151239 + L1MA5 LINE L1 5771 6289 -653 2251 131 0 0 chrX 115448691 115449003 -47150927 + AluSx SINE Alu 1 312 0 3057 168 30 17 chrX 115449003 115449513 -47150417 + L1MA5 LINE L1 6289 6942 0 236 30 30 0 chrX 115449519 115449552 -47150378 + (TA)n Simple_repeat Simple_repeat 2 35 0 801 333 27 47 chrX 115449635 115450082 -47149848 - L2 LINE L2 -1 3312 2875 1610 244 98 74 chrX 115450135 115450975 -47148955 + L1M3e LINE L1 1 860 -6170 507 247 7 34 chrX 115450975 115451121 -47148809 + L1M3e LINE L1 1779 1920 -5110 1410 267 35 22 chrX 115451127 115451678 -47148252 + L1ME3A LINE L1 986 1543 -4841 1480 244 42 36 chrX 115451750 115452234 -47147696 + L1ME3A LINE L1 1964 2463 -3919 1954 180 9 0 chrX 115452234 115452579 -47147351 + MER7A DNA MER2_type 1 346 0 1480 244 42 36 chrX 115452579 115452926 -47147004 + L1ME3A LINE L1 2463 2806 -3576 * 7173 233 89 6 chrX 115452920 115455244 -47144686 + L1ME3A LINE L1 3041 5559 -833 1092 165 33 0 chrX 115455243 115455455 -47144475 + L1MA8 LINE L1 3761 3979 -2167 * 1648 135 8 77 chrX 115455455 115455824 -47144106 - MER4A LTR ERV1 0 664 263 562 125 31 10 chrX 115455824 115455920 -47144010 - MER4A LTR ERV1 -566 98 1 6321 179 25 13 chrX 115455921 115457199 -47142731 + L1MA8 LINE L1 3978 5291 -1000 2428 94 0 0 chrX 115457199 115457508 -47142422 + AluSc SINE Alu 1 309 0 6321 179 25 13 chrX 115457508 115458514 -47141416 + L1MA8 LINE L1 5291 6283 -8 446 151 32 0 chrX 115458748 115458841 -47141089 + L1MA4 LINE L1 6200 6295 -5 742 269 50 15 chrX 115458856 115459194 -47140736 + L1ME3A LINE L1 6044 6393 -13 297 183 0 0 chrX 115459569 115459629 -47140301 + (TA)n Simple_repeat Simple_repeat 1 60 0 299 286 92 76 chrX 115460116 115460220 -47139710 - MER5A DNA MER1_type 0 189 79 1433 155 36 4 chrX 115460220 115460497 -47139433 + L1MA4A LINE L1 6016 6301 -2 299 286 92 76 chrX 115460497 115460577 -47139353 - MER5A DNA MER1_type -110 79 2 859 184 66 20 chrX 115460960 115461156 -47138774 - MER3 DNA MER1_type -4 205 1 467 176 22 0 chrX 115461227 115461318 -47138612 + MLT1A1 LTR MaLR 273 365 0 296 211 0 18 chrX 115461367 115461424 -47138506 + L1M3c LINE L1 1 56 -6085 1249 189 53 4 chrX 115461424 115461667 -47138263 + MLT1A1-int LTR MaLR 305 559 -1176 1502 280 25 9 chrX 115461698 115462134 -47137796 - L1M3c LINE L1 -5698 443 1 531 178 56 0 chrX 115462134 115462241 -47137689 - MLT-int LTR MaLR -1421 314 202 590 83 0 0 chrX 115462260 115462344 -47137586 - AluSg/x SINE Alu -16 294 211 368 121 0 0 chrX 115462346 115462404 -47137526 - MLT-int LTR MaLR -1537 198 141 * 465 128 13 0 chrX 115462396 115462474 -47137456 - MLT1A1-int LTR MaLR -1656 79 1 1389 189 22 124 chrX 115462476 115462879 -47137051 - MLT1A1 LTR MaLR -3 362 1 448 248 35 14 chrX 115462894 115463035 -47136895 - L1MC5 LINE L1 -91 7870 7727 240 115 115 16 chrX 115463049 115463110 -47136820 - L1MC5 LINE L1 -285 7676 7610 1025 255 68 69 chrX 115463170 115463952 -47135978 - L1MC5 LINE L1 -758 7203 6414 4058 186 32 63 chrX 115464032 115465433 -47134497 - L1MA10 LINE L1 -2 6332 4974 454 200 0 0 chrX 115465433 115465508 -47134422 + Tigger5 DNA MER2_type 2 76 -2247 368 232 0 0 chrX 115465512 115465581 -47134349 - Tigger5 DNA MER2_type -5 2318 2250 433 197 13 0 chrX 115465584 115465660 -47134270 + Tigger5 DNA MER2_type 2247 2323 0 480 239 5 0 chrX 115465677 115465790 -47134140 - L1 LINE L1 -1174 4972 4855 1228 226 26 68 chrX 115465801 115466182 -47133748 + MLT1A1 LTR MaLR 1 365 0 6955 213 58 42 chrX 115466182 115467890 -47132040 + MLT1A1-int LTR MaLR 1 1735 0 854 221 10 41 chrX 115467893 115468088 -47131842 + MLT1A1 LTR MaLR 4 192 -173 * 894 275 5 22 chrX 115468083 115468305 -47131625 + MLT1A1 LTR MaLR 148 365 0 2148 115 0 0 chrX 115468477 115468764 -47131166 + AluSx SINE Alu 1 287 -25 207 0 0 0 chrX 115468768 115468791 -47131139 + (CTA)n Simple_repeat Simple_repeat 1 23 0 570 333 109 6 chrX 115468791 115469260 -47130670 + HAL1 LINE L1 1083 1599 -908 481 283 61 77 chrX 115469353 115469600 -47130330 - LTR16A LTR ERVL -103 347 105 2088 136 48 20 chrX 115469661 115470015 -47129915 - THE1B LTR MaLR 0 364 1 628 74 0 0 chrX 115470015 115470110 -47129820 - THE1B-int LTR MaLR 0 1580 1486 * 6750 96 10 1 chrX 115470107 115471025 -47128905 - THE1B-int LTR MaLR -654 926 1 1958 133 54 34 chrX 115471025 115471378 -47128552 - THE1B LTR MaLR 0 364 5 540 359 40 25 chrX 115471504 115471908 -47128022 - HERV16 LTR ERVL -387 5377 4968 2710 29 0 0 chrX 115472020 115472331 -47127599 - AluYa5 SINE Alu 0 311 1 467 298 31 43 chrX 115472390 115472551 -47127379 - HERV16 LTR ERVL -4836 160 2 2495 206 61 60 chrX 115472585 115473255 -47126675 + L1ME2 LINE L1 5410 6083 -81 6687 141 45 14 chrX 115473255 115474448 -47125482 - Tigger3b DNA MER2_type -1 1230 1 2495 206 61 60 chrX 115474448 115474515 -47125415 + L1ME2 LINE L1 6083 6148 -16 237 65 0 0 chrX 115474767 115474798 -47125132 + (T)n Simple_repeat Simple_repeat 1 31 0 2358 98 0 0 chrX 115475670 115475975 -47123955 - AluSg SINE Alu -5 305 1 1250 181 45 0 chrX 115477014 115477280 -47122650 - L1MC3 LINE L1 0 7785 7508 1872 245 22 5 chrX 115477311 115477862 -47122068 - L1 LINE L1 -2886 3260 2701 2979 265 92 24 chrX 115477870 115478524 -47121406 - L1M4 LINE L1 -1744 4402 3794 2117 104 45 0 chrX 115478524 115478811 -47121119 - AluSx SINE Alu -12 300 1 2979 265 92 24 chrX 115478811 115479427 -47120503 - L1M4 LINE L1 -2352 3794 3045 184 308 100 25 chrX 115480094 115480214 -47119716 - L2 LINE L2 -792 2522 2394 212 307 30 59 chrX 115480321 115480422 -47119508 - L2 LINE L2 -2 3270 3173 378 221 32 11 chrX 115480710 115480805 -47119125 - MIR SINE MIR -48 214 118 869 269 83 23 chrX 115480809 115481160 -47118770 - MER31A LTR ERV1 -2 541 103 * 2980 198 21 3 chrX 115481156 115481727 -47118203 + MER34C LTR ERV1 5 585 0 629 231 15 0 chrX 115481727 115481851 -47118079 - MER31B LTR ERV1 -336 130 5 448 256 89 30 chrX 115482000 115482168 -47117762 + MER5B DNA MER1_type 1 178 0 943 199 0 0 chrX 115482252 115482413 -47117517 + FRAM SINE Alu 1 155 -21 2654 200 63 38 chrX 115482464 115483149 -47116781 - MER67C LTR ERV1 0 710 9 3012 155 148 3 chrX 115484015 115484601 -47115329 - LTR51 LTR ERV1 0 671 1 242 246 10 42 chrX 115484771 115484867 -47115063 + MIR3 SINE MIR 72 165 -43 * 252 263 11 63 chrX 115484866 115484961 -47114969 + L3b LINE CR1 1294 1383 -200 1448 202 27 75 chrX 115485778 115486301 -47113629 - MER34B LTR ERV1 -2 540 5 794 274 230 48 chrX 115486652 115487280 -47112650 - L3 LINE CR1 -3 1574 817 2413 197 42 57 chrX 115487280 115487925 -47112005 + MER92B LTR ERV1 2 636 0 794 274 230 48 chrX 115487925 115487960 -47111970 - L3 LINE CR1 -760 817 790 4682 86 19 153 chrX 115488017 115488966 -47110964 + LTR12 LTR ERV1 5 826 0 2362 90 3 0 chrX 115488966 115489287 -47110643 + PABL_A LTR ERV1 339 660 0 239 232 0 18 chrX 115489330 115489386 -47110544 + CT-rich Low_complexity Low_complexity 4 58 0 2062 154 0 0 chrX 115490657 115490962 -47108968 - AluJb SINE Alu -5 307 3 550 191 0 0 chrX 115491076 115491165 -47108765 - Tigger7 DNA MER2_type 0 2487 2399 5091 174 22 15 chrX 115491186 115492257 -47107673 - L1 LINE L1 -1007 5139 4061 22706 98 14 1 chrX 115492563 115495013 -47104917 - L1PA7 LINE L1 0 6154 3633 240 35 0 0 chrX 115495013 115495042 -47104888 + (TTG)n Simple_repeat Simple_repeat 3 31 0 22706 98 14 1 chrX 115495042 115496740 -47103190 - L1PA7 LINE L1 -2521 3633 1959 823 218 18 0 chrX 115496868 115497033 -47102897 + AluJb SINE Alu 109 276 -36 620 272 36 10 chrX 115498624 115498819 -47101111 - L1MC/D LINE L1 -2055 5753 5554 579 303 144 0 chrX 115499328 115499516 -47100414 - MIR SINE MIR 0 262 48 451 304 13 19 chrX 115499572 115499730 -47100200 + MIR SINE MIR 81 237 -25 227 247 178 0 chrX 115500117 115500190 -47099740 - L1MD2 LINE L1 -134 6225 6140 43954 38 3 1 chrX 115500966 115507096 -47092834 + L1PA3 LINE L1 18 6155 0 377 273 66 16 chrX 115507250 115507433 -47092497 + L1MEd LINE L1 974 1165 -4954 2397 70 0 13 chrX 115507478 115507778 -47092152 + AluY SINE Alu 4 299 -12 699 155 42 0 chrX 115507783 115507925 -47092005 + L1MA6 LINE L1 6153 6300 0 1964 187 31 28 chrX 115507935 115508357 -47091573 + L1MA8 LINE L1 5428 5850 -441 * 18751 114 11 42 chrX 115508349 115514768 -47085162 + L1PA7 LINE L1 12 6152 -2 22 0 0 0 chrX 115514883 115514905 -47085025 + AT_rich Low_complexity Low_complexity 1 22 0 1785 181 10 7 chrX 115515021 115515330 -47084600 + AluJb SINE Alu 1 310 -2 24 67 0 0 chrX 115516333 115516378 -47083552 + AT_rich Low_complexity Low_complexity 1 45 0 2448 147 20 13 chrX 115516396 115516846 -47083084 + L1MA7 LINE L1 5814 6266 -25 195 42 0 0 chrX 115516846 115516870 -47083060 + (TA)n Simple_repeat Simple_repeat 1 24 0 270 369 66 11 chrX 115516896 115517259 -47082671 + HAL1 LINE L1 1266 1648 -859 678 224 52 6 chrX 115517463 115517637 -47082293 - MER58A DNA MER1_type -1 223 42 395 330 85 70 chrX 115518008 115518278 -47081652 + L2 LINE L2 2999 3272 0 522 241 48 35 chrX 115518368 115518513 -47081417 - L2 LINE L2 0 3313 3167 354 268 21 55 chrX 115518788 115518961 -47080969 + MIR SINE MIR 6 133 -75 432 200 0 49 chrX 115519019 115519204 -47080726 + (TAA)n Simple_repeat Simple_repeat 1 176 0 739 128 101 13 chrX 115519597 115519755 -47080175 + LTR7 LTR ERV1 1 218 -232 18536 97 21 16 chrX 115519855 115522829 -47077101 + HERVH LTR ERV1 1 2987 -4726 827 149 20 0 chrX 115522823 115522971 -47076959 + HERVH LTR ERV1 3140 3290 -4423 * 3131 106 20 2 chrX 115522961 115523454 -47076476 + HERVH LTR ERV1 3492 3993 -3720 * 3921 159 8 6 chrX 115523450 115524121 -47075809 + HERVH LTR ERV1 4478 5149 -2564 1308 129 18 5 chrX 115524122 115524339 -47075591 + HERVH LTR ERV1 5600 5819 -1894 2470 70 45 3 chrX 115524339 115524713 -47075217 + HERVH LTR ERV1 7324 7713 0 2022 116 87 66 chrX 115524713 115525152 -47074778 + LTR7 LTR ERV1 1 448 -2 572 231 18 28 chrX 115525198 115525428 -47074502 - L1MCa LINE L1 -3957 2469 2362 1265 263 42 20 chrX 115525706 115526106 -47073824 - MLT1I LTR MaLR 0 409 1 209 57 29 0 chrX 115526117 115526152 -47073778 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 730 290 50 8 chrX 115526562 115526800 -47073130 - MIR SINE MIR -3 259 12 635 286 6 22 chrX 115526858 115527023 -47072907 + MIR3 SINE MIR 30 196 -12 3527 14 34 2 chrX 115527023 115527436 -47072494 + L1PA4 LINE L1 5714 6139 -16 216 0 0 0 chrX 115527436 115527460 -47072470 + (TA)n Simple_repeat Simple_repeat 1 24 0 635 286 6 22 chrX 115527460 115527475 -47072455 + MIR3 SINE MIR 194 208 0 24 0 0 0 chrX 115527728 115527752 -47072178 + AT_rich Low_complexity Low_complexity 1 24 0 193 151 0 151 chrX 115528141 115528214 -47071716 - L2 LINE L2 -599 2715 2654 3777 246 55 9 chrX 115528693 115530001 -47069929 + L1M1 LINE L1 1 2069 -5496 * 11389 167 32 23 chrX 115530000 115530417 -47069513 + L1M1 LINE L1 3001 3413 -4152 1935 164 27 19 chrX 115530417 115530789 -47069141 - THE1C LTR MaLR 0 375 1 11389 167 32 23 chrX 115530789 115532229 -47067701 + L1M1 LINE L1 3413 4839 -2726 373 42 0 0 chrX 115532229 115532277 -47067653 - MADE1 DNA Mariner -1 79 32 11389 167 32 23 chrX 115532277 115532455 -47067475 + L1M1 LINE L1 4839 5014 -2551 2231 107 16 7 chrX 115532455 115532735 -47067195 + AluSq SINE Alu 1 277 -36 186 43 0 0 chrX 115532735 115532758 -47067172 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 537 16 0 0 chrX 115532765 115532827 -47067103 + (GGAAA)n Simple_repeat Simple_repeat 4 65 0 2231 107 16 7 chrX 115532827 115532847 -47067083 + AluSq SINE Alu 282 312 -1 11389 167 32 23 chrX 115532847 115533960 -47065970 + L1M1 LINE L1 5014 6229 -1336 525 93 0 0 chrX 115533961 115534036 -47065894 - L1P LINE L1 -1573 4573 4499 216 67 0 0 chrX 115535227 115535257 -47064673 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 327 293 36 48 chrX 115535350 115535517 -47064413 - L2 LINE L2 -2 3311 3147 1277 204 65 60 chrX 115535523 115535906 -47064024 - MLT1B LTR MaLR -5 385 1 217 354 127 14 chrX 115535978 115536162 -47063768 - L2 LINE L2 -209 3063 2901 2042 138 80 41 chrX 115536162 115536574 -47063356 + MSTA LTR MaLR 1 428 0 217 354 127 14 chrX 115536574 115536736 -47063194 - L2 LINE L2 -371 2901 2673 2634 141 7 5 chrX 115537068 115537487 -47062443 - L1PA15 LINE L1 -7 6809 6390 5821 112 4 9 chrX 115537490 115538422 -47061508 - L1MA1 LINE L1 0 6302 5375 4264 174 13 10 chrX 115538417 115539382 -47060548 - L1PA15 LINE L1 -399 6417 5451 * 2257 111 0 7 chrX 115539382 115539688 -47060242 - AluSx SINE Alu -8 304 1 4264 174 13 10 chrX 115539688 115540111 -47059819 - L1PA15 LINE L1 -1365 5451 5030 4399 248 27 23 chrX 115540141 115543127 -47056803 - L1PA15 LINE L1 -3578 3219 4 442 258 60 44 chrX 115543142 115543324 -47056606 - MIR SINE MIR -66 196 12 6115 226 37 4 chrX 115544757 115546095 -47053835 + L1M2 LINE L1 7 1388 -5461 2951 134 12 48 chrX 115546105 115546708 -47053222 + L1MA4A LINE L1 5258 5838 -465 * 5454 77 19 0 chrX 115546700 115547550 -47052380 - L1PA7 LINE L1 0 6154 5232 861 47 0 0 chrX 115547549 115547655 -47052275 - L1PA7 LINE L1 -1970 4176 4071 * 11236 96 5 12 chrX 115547653 115549408 -47050522 + L1PA7 LINE L1 2330 4071 -2075 2571 135 21 27 chrX 115549408 115549885 -47050045 + L1MA4A LINE L1 5823 6301 -2 380 281 36 51 chrX 115549885 115550081 -47049849 + MIR SINE MIR 62 254 -8 622 204 152 37 chrX 115550400 115550591 -47049339 + MIR SINE MIR 50 262 0 26 30 0 0 chrX 115551255 115551288 -47048642 + AT_rich Low_complexity Low_complexity 1 33 0 798 321 38 13 chrX 115551888 115552283 -47047647 + L1MEd LINE L1 11 415 -5704 198 0 0 0 chrX 115552308 115552330 -47047600 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3262 206 20 0 chrX 115552533 115553238 -47046692 - L1 LINE L1 -1814 4332 3614 1809 104 11 14 chrX 115553238 115553516 -47046414 + L1PB1 LINE L1 5870 6148 -3 30 0 0 0 chrX 115553516 115553546 -47046384 + AT_rich Low_complexity Low_complexity 1 30 0 694 188 99 29 chrX 115553617 115553935 -47045995 - Tigger3(Golem) DNA MER2_type -1 3028 2 695 239 95 107 chrX 115553935 115554366 -47045564 + L1MEd LINE L1 784 1209 -4910 1444 231 96 31 chrX 115554367 115554877 -47045053 - L1MC4a LINE L1 -267 7541 6999 496 175 24 90 chrX 115554888 115554924 -47045006 - L1MD3 LINE L1 -1 7994 7957 5237 120 18 20 chrX 115554924 115556271 -47043659 - L1PA16 LINE L1 0 6166 4790 257 0 30 0 chrX 115556271 115556304 -47043626 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5237 120 18 20 chrX 115556304 115556934 -47042996 - L1PA16 LINE L1 -1376 4790 4160 496 175 24 90 chrX 115556934 115557108 -47042822 - L1MD3 LINE L1 -38 7957 7798 529 218 30 45 chrX 115557157 115557290 -47042640 - FLAM_A SINE Alu -1 132 2 273 301 43 0 chrX 115557325 115557418 -47042512 - L1MD2 LINE L1 -193 6166 6070 1054 237 129 16 chrX 115557420 115557808 -47042122 - L1MD3 LINE L1 -945 7050 6619 333 194 0 118 chrX 115557808 115557901 -47042029 - L1MC4 LINE L1 -1345 6697 6616 303 137 0 0 chrX 115557925 115557976 -47041954 - L1MC4a LINE L1 -1354 6454 6404 316 291 171 24 chrX 115558840 115558970 -47040960 + MIR SINE MIR 13 122 -140 1118 250 71 44 chrX 115558970 115559406 -47040524 + MLT1J2 LTR MaLR 3 450 0 316 291 171 24 chrX 115559406 115559485 -47040445 + MIR SINE MIR 122 253 -9 24 32 0 0 chrX 115559659 115559690 -47040240 + AT_rich Low_complexity Low_complexity 1 31 0 792 157 17 81 chrX 115560598 115560673 -47039257 + MER5A DNA MER1_type 1 79 -110 2658 39 0 0 chrX 115560673 115560981 -47038949 + AluY SINE Alu 1 308 -3 792 157 17 81 chrX 115560981 115561077 -47038853 + MER5A DNA MER1_type 79 161 -28 6101 115 28 9 chrX 115561182 115562211 -47037719 - L1MA3 LINE L1 -3 7721 6673 2556 115 11 6 chrX 115562226 115562592 -47037338 + THE1C LTR MaLR 1 368 -7 2820 89 5 17 chrX 115562593 115562999 -47036931 + THE1C-int LTR MaLR 1 401 -1179 3700 94 2 4 chrX 115563009 115563507 -47036423 + THE1C-int LTR MaLR 1084 1580 0 2665 110 0 3 chrX 115563509 115563883 -47036047 + THE1C LTR MaLR 3 375 0 732 159 0 0 chrX 115563883 115564015 -47035915 - L1MA3 LINE L1 -903 6662 6531 318 271 47 0 chrX 115564015 115564100 -47035830 - L1MC4 LINE L1 -1339 6703 6615 363 192 0 0 chrX 115564100 115564178 -47035752 + (CA)n Simple_repeat Simple_repeat 1 78 0 12592 144 40 7 chrX 115564219 115565246 -47034684 - L1MA3 LINE L1 -4614 2951 1959 2316 106 0 0 chrX 115565246 115565549 -47034381 + AluSq SINE Alu 1 303 -10 12592 144 40 7 chrX 115565549 115566598 -47033332 - L1MA3 LINE L1 -5606 1959 808 457 269 62 58 chrX 115566689 115566946 -47032984 - MIR SINE MIR 0 262 5 5270 117 55 14 chrX 115569152 115570725 -47029205 + L1PA16 LINE L1 4546 6156 -10 208 284 148 0 chrX 115571147 115571228 -47028702 + L2 LINE L2 3168 3260 -12 243 0 0 0 chrX 115571229 115571256 -47028674 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 24 32 0 0 chrX 115571589 115571620 -47028310 + AT_rich Low_complexity Low_complexity 1 31 0 276 311 44 48 chrX 115573166 115573261 -47026669 + L2 LINE L2 2230 2324 -990 1777 214 19 3 chrX 115573261 115573620 -47026310 + MLT1A1 LTR MaLR 1 365 0 276 311 44 48 chrX 115573620 115573730 -47026200 + L2 LINE L2 2324 2434 -880 2762 107 5 27 chrX 115573832 115574273 -47025657 - MER57B LTR ERV1 -3 431 1 403 316 45 98 chrX 115574376 115574733 -47025197 + L2 LINE L2 2935 3272 0 2169 147 15 61 chrX 115574846 115575255 -47024675 - MLT1B LTR MaLR 0 390 1 354 141 16 0 chrX 115576327 115576391 -47023539 - L1MA8 LINE L1 -173 6118 6054 452 172 0 11 chrX 115576393 115576486 -47023444 + L1MA8 LINE L1 6187 6278 -13 8928 156 38 18 chrX 115576495 115579300 -47020630 - L1MA4A LINE L1 -11 6292 3429 27 29 0 0 chrX 115580451 115580485 -47019445 + AT_rich Low_complexity Low_complexity 1 34 0 2948 178 33 104 chrX 115580500 115580928 -47019002 + L1MA7 LINE L1 4864 5321 -970 351 0 0 0 chrX 115580928 115580967 -47018963 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2948 178 33 104 chrX 115580967 115581368 -47018562 + L1MA7 LINE L1 5321 5749 -542 4284 127 14 0 chrX 115581368 115582063 -47017867 + L1MA4A LINE L1 5593 6297 -6 2948 178 33 104 chrX 115582063 115582166 -47017764 + L1MA7 LINE L1 5749 5858 -433 14012 144 27 5 chrX 115582166 115584531 -47015399 - Tigger1 DNA MER2_type 0 2418 2 2948 178 33 104 chrX 115584531 115585153 -47014777 + L1MA7 LINE L1 5858 6279 -12 364 218 66 0 chrX 115585164 115585288 -47014642 + MIR SINE MIR 67 200 -62 290 181 111 0 chrX 115585288 115585360 -47014570 - MER116 DNA Mariner 0 80 1 712 219 35 0 chrX 115586788 115586957 -47012973 + MER5B DNA MER1_type 1 175 -3 231 253 201 26 chrX 115586989 115587143 -47012787 - MARNA DNA Mariner -379 207 27 581 0 0 0 chrX 115588084 115588151 -47011779 + L1PA4 LINE L1 6081 6147 -8 22 35 0 0 chrX 115588151 115588180 -47011750 + AT_rich Low_complexity Low_complexity 1 29 0 218 371 14 21 chrX 115589777 115589920 -47010010 - L3b LINE CR1 -247 1336 1195 556 221 61 44 chrX 115590015 115590196 -47009734 + MIR SINE MIR 77 260 -2 1430 114 10 0 chrX 115590672 115590926 -47009004 - AluSg/x SINE Alu 0 342 87 279 280 24 40 chrX 115591030 115591155 -47008775 + L1M3e LINE L1 7 1258 -5769 14597 166 33 13 chrX 115592732 115598120 -47001810 - L1MA1 LINE L1 0 7721 2442 2869 6 0 0 chrX 115598120 115598431 -47001499 - AluYa5 SINE Alu 0 311 1 14597 166 33 13 chrX 115598431 115598853 -47001077 - L1MA1 LINE L1 -5279 2442 2030 405 0 0 0 chrX 115598853 115598898 -47001032 + (TC)n Simple_repeat Simple_repeat 2 46 0 14597 166 33 13 chrX 115598898 115599516 -47000414 - L1MA1 LINE L1 -5691 2030 1160 5350 121 21 37 chrX 115600084 115600618 -46999312 + L1PA11 LINE L1 4793 5334 -840 2206 106 48 28 chrX 115600618 115600975 -46998955 + THE1B LTR MaLR 1 364 0 11371 98 20 0 chrX 115600975 115602524 -46997406 + THE1B-int LTR MaLR 1 1580 0 2099 141 22 25 chrX 115602526 115602889 -46997041 + THE1B LTR MaLR 3 364 0 5350 121 21 37 chrX 115602889 115603669 -46996261 + L1PA11 LINE L1 5334 6091 -83 23 33 0 0 chrX 115603678 115603708 -46996222 + AT_rich Low_complexity Low_complexity 1 30 0 839 81 0 16 chrX 115603769 115603892 -46996038 + L1PA11 LINE L1 6052 6172 -2 246 62 0 0 chrX 115604563 115604595 -46995335 + (TG)n Simple_repeat Simple_repeat 1 32 0 494 202 0 9 chrX 115604595 115604709 -46995221 + GA-rich Low_complexity Low_complexity 4 116 0 1892 184 45 56 chrX 115604897 115605360 -46994570 - MLT1D LTR MaLR 0 505 48 477 170 40 0 chrX 115605522 115605622 -46994308 - L1PA16 LINE L1 -4 6162 6059 810 265 75 102 chrX 115606233 115606883 -46993047 + HAL1 LINE L1 1 633 -1874 3993 139 2 2 chrX 115607187 115607818 -46992112 - L1PA15 LINE L1 -2 6163 5533 506 259 191 91 chrX 115607855 115608033 -46991897 + HAL1 LINE L1 1660 1819 -688 1591 172 0 58 chrX 115608033 115608376 -46991554 + L1PA16 LINE L1 5844 6166 0 506 259 191 91 chrX 115608376 115608876 -46991054 + HAL1 LINE L1 1819 2406 -101 27 81 0 0 chrX 115608894 115608956 -46990974 + AT_rich Low_complexity Low_complexity 1 62 0 200 241 13 0 chrX 115610819 115610898 -46989032 + (TG)n Simple_repeat Simple_repeat 2 81 0 542 287 129 31 chrX 115612277 115612563 -46987367 + L3 LINE CR1 1263 1576 -1 647 300 25 20 chrX 115612970 115613170 -46986760 + MIR SINE MIR 18 218 -44 1142 197 4 68 chrX 115613449 115613626 -46986304 + MLT1A1 LTR MaLR 119 275 -90 441 0 0 0 chrX 115613626 115613675 -46986255 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 1142 197 4 68 chrX 115613675 115613761 -46986169 + MLT1A1 LTR MaLR 275 365 0 800 268 14 69 chrX 115613801 115614077 -46985853 + MIR SINE MIR 2 262 0 1653 209 38 49 chrX 115614923 115615292 -46984638 + MLT1A1 LTR MaLR 1 365 0 736 269 28 19 chrX 115615520 115615736 -46984194 + MIR SINE MIR 45 262 0 2149 179 6 8 chrX 115616243 115616606 -46983324 + MLT1A1 LTR MaLR 1 362 -3 2160 113 0 0 chrX 115617142 115617466 -46982464 - AluSx SINE Alu 0 324 1 1559 208 88 14 chrX 115619888 115620256 -46979674 - MSTD LTR MaLR -2 384 1 3056 40 0 8 chrX 115620473 115620827 -46979103 + L1PA5 LINE L1 5804 6154 0 30 0 0 0 chrX 115620827 115620857 -46979073 + AT_rich Low_complexity Low_complexity 1 30 0 219 306 40 89 chrX 115620906 115621030 -46978900 + L2 LINE L2 2925 3042 -230 206 320 31 78 chrX 115621277 115621405 -46978525 + L2 LINE L2 3103 3224 -48 292 143 0 20 chrX 115621597 115621646 -46978284 - MLT2C2 LTR ERVL 0 464 417 372 125 0 0 chrX 115621649 115621713 -46978217 + (TA)n Simple_repeat Simple_repeat 1 64 0 247 219 12 0 chrX 115621713 115621795 -46978135 - L1MC4 LINE L1 -1336 6706 6624 297 0 0 0 chrX 115621798 115621831 -46978099 + (TG)n Simple_repeat Simple_repeat 2 34 0 1807 201 137 12 chrX 115621835 115622257 -46977673 - MLT2B1 LTR ERVL -40 480 6 1102 196 10 5 chrX 115622314 115622513 -46977417 - MER20 DNA MER1_type 0 219 20 358 252 20 82 chrX 115623792 115623939 -46975991 + MIR SINE MIR 14 151 -111 252 0 0 0 chrX 115623995 115624023 -46975907 + (CA)n Simple_repeat Simple_repeat 1 28 0 720 285 30 69 chrX 115624109 115624502 -46975428 + L2 LINE L2 2520 2897 -417 374 333 20 20 chrX 115625195 115625342 -46974588 - MIR SINE MIR -30 232 86 897 206 31 10 chrX 115625423 115625617 -46974313 + MIR SINE MIR 3 200 -62 998 222 166 71 chrX 115626636 115627172 -46972758 - MLT1G1 LTR MaLR -8 587 1 21 36 0 0 chrX 115627178 115627206 -46972724 + AT_rich Low_complexity Low_complexity 1 28 0 368 250 37 73 chrX 115628400 115628536 -46971394 - L2 LINE L2 -1 3271 3141 593 175 23 0 chrX 115628923 115629094 -46970836 + (TA)n Simple_repeat Simple_repeat 1 175 0 31 26 0 0 chrX 115629117 115629155 -46970775 + AT_rich Low_complexity Low_complexity 1 38 0 266 89 44 0 chrX 115629167 115629212 -46970718 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 206 217 0 22 chrX 115629269 115629315 -46970615 + GA-rich Low_complexity Low_complexity 1 45 0 9085 190 22 22 chrX 115630318 115631900 -46968030 + L1PA12 LINE L1 1 865 -6716 2418 76 0 0 chrX 115631900 115632191 -46967739 - AluSx SINE Alu -17 295 5 9085 190 22 22 chrX 115632191 115633195 -46966735 + L1PA12 LINE L1 865 1867 -5714 2159 135 128 16 chrX 115633195 115633579 -46966351 - MSTA LTR MaLR 0 428 2 6979 153 16 13 chrX 115633580 115634761 -46965169 - MSTA-int LTR MaLR 0 1580 428 6043 106 103 121 chrX 115634771 115636361 -46963569 + pTR5 LTR ERV1 741 2438 0 2702 132 14 2 chrX 115636369 115636786 -46963144 - MSTA-int LTR MaLR -1154 426 5 1950 154 144 24 chrX 115636790 115637172 -46962758 - MSTA LTR MaLR 0 428 1 6728 123 44 0 chrX 115637172 115638196 -46961734 + L1PA12 LINE L1 1863 2931 -4650 1652 149 103 21 chrX 115638713 115638775 -46961155 + L1MB7 LINE L1 5364 5419 -765 2076 118 11 4 chrX 115638775 115639091 -46960839 + AluSx SINE Alu 1 318 0 1652 149 103 21 chrX 115639091 115639648 -46960282 + L1MB7 LINE L1 5419 6184 0 1376 180 4 31 chrX 115640806 115641067 -46958863 + AluJo SINE Alu 46 299 -13 29 28 0 0 chrX 115641492 115641528 -46958402 + AT_rich Low_complexity Low_complexity 1 36 0 2175 208 53 2 chrX 115641558 115642025 -46957905 + L1PA12 LINE L1 2925 3415 -4169 4420 176 42 49 chrX 115643016 115643943 -46955987 - L1MC3 LINE L1 -7 7778 6857 200 83 0 28 chrX 115643943 115643979 -46955951 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 4420 176 42 49 chrX 115643979 115644079 -46955851 - L1MC3 LINE L1 -928 6857 6758 1930 146 117 23 chrX 115644950 115645293 -46954637 - THE1C LTR MaLR 0 375 1 227 257 54 40 chrX 115645929 115646003 -46953927 - MER5A DNA MER1_type -76 113 39 223 400 0 0 chrX 115645954 115646029 -46953901 + MER5A DNA MER1_type 114 188 -1 * 597 364 22 26 chrX 115646325 115646594 -46953336 + L3 LINE CR1 1301 1568 -9 22 0 0 0 chrX 115646632 115646654 -46953276 + AT_rich Low_complexity Low_complexity 1 22 0 311 298 48 8 chrX 115647310 115647434 -46952496 + MIR3 SINE MIR 52 180 -28 400 338 66 25 chrX 115647907 115648105 -46951825 + MIR SINE MIR 13 218 -44 18829 183 30 9 chrX 115648800 115655449 -46944481 + L1PA13 LINE L1 4 6809 -5 431 321 14 0 chrX 115655582 115655722 -46944208 - MIR3 SINE MIR -3 205 64 8448 89 10 3 chrX 115656228 115658124 -46941806 - L1PA7 LINE L1 -5 6149 4234 1233 186 71 100 chrX 115658124 115658576 -46941354 + LTR7 LTR ERV1 5 443 -7 2726 134 9 22 chrX 115658595 115659049 -46940881 + HERVH LTR ERV1 12 459 -7254 13330 133 23 27 chrX 115659110 115661315 -46938615 + HERVH LTR ERV1 801 2995 -4718 5435 139 5 3 chrX 115661294 115662147 -46937783 + HERVH LTR ERV1 3140 3993 -3720 * 514 118 0 54 chrX 115662226 115662319 -46937611 + LTR7 LTR ERV1 363 450 0 5587 93 34 0 chrX 115662319 115663112 -46936818 - L1P LINE L1 -1904 4242 3423 6407 77 10 2 chrX 115663112 115663945 -46935985 + HERVL-A1 LTR ERVL 4816 5654 0 2831 113 2 17 chrX 115663945 115664360 -46935570 + MLT2A1 LTR ERVL 1 409 -35 457 69 27 112 chrX 115664360 115664643 -46935287 + (TA)n Simple_repeat Simple_repeat 1 258 0 254 119 24 115 chrX 115664646 115664937 -46934993 + (TATATG)n Simple_repeat Simple_repeat 1 264 0 354 173 56 67 chrX 115664958 115665137 -46934793 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 216 127 28 101 chrX 115665140 115665399 -46934531 + (TA)n Simple_repeat Simple_repeat 1 240 0 253 189 67 0 chrX 115665416 115665580 -46934350 + (TA)n Simple_repeat Simple_repeat 1 175 0 424 144 5 139 chrX 115665654 115665855 -46934075 + (TATATG)n Simple_repeat Simple_repeat 2 175 0 451 42 5 180 chrX 115665860 115666077 -46933853 + (TA)n Simple_repeat Simple_repeat 1 179 0 281 157 20 0 chrX 115666078 115666129 -46933801 + MLT2A1 LTR ERVL 391 442 -2 497 335 165 33 chrX 115666129 115666603 -46933327 + L2 LINE L2 2736 3267 -5 180 300 17 0 chrX 115666636 115666696 -46933234 + L3 LINE CR1 1249 1309 -268 294 324 81 75 chrX 115668181 115668354 -46931576 + MIR SINE MIR 8 181 -81 667 289 71 29 chrX 115670426 115670665 -46929265 - MIR SINE MIR -3 259 11 294 291 25 25 chrX 115671379 115671458 -46928472 + Charlie1 DNA MER1_type 1 79 -2682 * 2765 151 79 22 chrX 115671449 115672032 -46927898 + Charlie1 DNA MER1_type 2144 2759 -2 287 336 49 8 chrX 115672183 115672305 -46927625 + L2 LINE L2 3187 3313 0 4593 97 13 0 chrX 115673219 115673898 -46926032 - L1PA7 LINE L1 -807 5339 4652 6361 59 7 6 chrX 115673898 115674727 -46925203 + L1PA7 LINE L1 5321 6151 -3 498 75 0 0 chrX 115675341 115675408 -46924522 + (TG)n Simple_repeat Simple_repeat 2 68 0 305 171 0 14 chrX 115675466 115675536 -46924394 + (TA)n Simple_repeat Simple_repeat 2 70 0 406 308 129 58 chrX 115675661 115675885 -46924045 + MLT1K LTR MaLR 10 249 -339 271 183 67 0 chrX 115676163 115676223 -46923707 - MLT1K LTR MaLR -2 586 523 244 283 17 0 chrX 115676338 115676398 -46923532 + CT-rich Low_complexity Low_complexity 2 62 0 769 313 73 25 chrX 115677024 115677423 -46922507 + L2 LINE L2 2384 2801 -513 386 266 77 68 chrX 115678676 115678883 -46921047 - MIR SINE MIR -48 214 6 358 279 52 44 chrX 115679399 115679535 -46920395 - MIR SINE MIR 0 262 126 1277 191 0 0 chrX 115680171 115680386 -46919544 + L1PA13 LINE L1 175 389 -6398 * 6415 232 15 8 chrX 115680384 115682851 -46917079 + L1PA13 LINE L1 1326 3823 -2974 2109 133 118 2 chrX 115682852 115683419 -46916511 + L1PA15 LINE L1 5056 5687 -478 31317 110 11 52 chrX 115683429 115689849 -46910081 + L1PA7 LINE L1 12 6151 -3 2447 157 27 2 chrX 115689870 115690284 -46909646 + L1PA15 LINE L1 5677 6100 -65 322 298 10 19 chrX 115690385 115690489 -46909441 - MER81 DNA DNA 0 114 12 242 280 13 27 chrX 115691041 115691116 -46908814 + Charlie8 DNA MER1_type 34 107 -2310 853 277 27 23 chrX 115691566 115691822 -46908108 + MIR SINE MIR 6 262 0 33 0 0 0 chrX 115691825 115691858 -46908072 + AT_rich Low_complexity Low_complexity 1 33 0 425 302 75 19 chrX 115692200 115692359 -46907571 - MIR SINE MIR -84 178 11 276 204 0 0 chrX 115692473 115692527 -46907403 + L1 LINE L1 4920 4973 -1173 751 95 5 196 chrX 115692537 115692726 -46907204 + L1PA13 LINE L1 6000 6152 -11 210 37 0 0 chrX 115692726 115692753 -46907177 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 269 342 34 43 chrX 115692753 115692987 -46906943 - L2 LINE L2 -1487 1827 1596 225 250 0 0 chrX 115693587 115693639 -46906291 + (TG)n Simple_repeat Simple_repeat 2 53 0 303 122 0 0 chrX 115694380 115694429 -46905501 + (TC)n Simple_repeat Simple_repeat 2 50 0 243 61 0 0 chrX 115694453 115694486 -46905444 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 459 362 109 46 chrX 115695890 115696285 -46903645 - L2 LINE L2 0 3272 2853 1553 223 5 56 chrX 115696295 115696689 -46903241 - MLT1B LTR MaLR -11 379 6 537 272 59 45 chrX 115696762 115696815 -46903115 - L2 LINE L2 -604 2710 2659 1964 221 36 36 chrX 115696815 115697318 -46902612 - MLT1D LTR MaLR -2 503 1 537 272 59 45 chrX 115697318 115697466 -46902464 - L2 LINE L2 -655 2659 2506 423 0 0 0 chrX 115697466 115697513 -46902417 + (TA)n Simple_repeat Simple_repeat 1 47 0 1242 218 13 50 chrX 115698275 115698573 -46901357 + L1M3e LINE L1 1 287 -6743 2624 228 51 31 chrX 115698584 115700082 -46899848 + L1M3e LINE L1 1188 2722 -4385 6030 206 93 6 chrX 115700091 115700159 -46899771 + L1 LINE L1 19 80 -7485 189 0 0 0 chrX 115700159 115700180 -46899750 + (CA)n Simple_repeat Simple_repeat 1 21 0 6030 206 93 6 chrX 115700180 115701411 -46898519 + L1 LINE L1 80 1431 -6134 2072 161 24 10 chrX 115701618 115702029 -46897901 - L1MA2 LINE L1 -6 6298 5882 2139 173 7 11 chrX 115702029 115702463 -46897467 + L1 LINE L1 5848 6279 -1286 216 0 0 0 chrX 115702463 115702487 -46897443 + (TTA)n Simple_repeat Simple_repeat 1 24 0 29670 99 6 8 chrX 115702487 115707792 -46892138 - L1PA5 LINE L1 -13 6456 1162 659 111 0 0 chrX 115707790 115707880 -46892050 - L1PA5 LINE L1 -6365 96 7 * 7077 174 57 0 chrX 115707874 115709272 -46890658 - L1 LINE L1 -1256 4890 3414 547 130 43 0 chrX 115709277 115709369 -46890561 - Tigger3(Golem) DNA MER2_type -50 2979 2884 1050 211 30 0 chrX 115709373 115709610 -46890320 + L1ME1 LINE L1 5805 6048 -118 2227 146 22 0 chrX 115710294 115710650 -46889280 + THE1B LTR MaLR 1 364 0 559 246 15 8 chrX 115711013 115711143 -46888787 - MER58B DNA MER1_type 0 341 211 319 238 37 0 chrX 115711353 115711464 -46888466 - L1MB7 LINE L1 -2 6176 6060 190 148 37 0 chrX 115711545 115711599 -46888331 + (GTTTG)n Simple_repeat Simple_repeat 4 59 0 1248 176 40 44 chrX 115712258 115712411 -46887519 + L1MB8 LINE L1 5819 5972 -206 2077 130 0 3 chrX 115712411 115712712 -46887218 + AluSx SINE Alu 1 300 -12 1248 176 40 44 chrX 115712712 115712830 -46887100 + L1MB8 LINE L1 5972 6089 -89 1985 141 0 30 chrX 115712877 115713176 -46886754 - AluSx SINE Alu -22 290 1 520 138 9 37 chrX 115713176 115713285 -46886645 + L1MB7 LINE L1 6077 6182 -2 514 275 138 43 chrX 115713992 115714293 -46885637 - L1MB7 LINE L1 -376 5745 5486 365 284 0 0 chrX 115714293 115714374 -46885556 + Tigger3(Golem) DNA MER2_type 2 82 -2947 * 4596 147 19 5 chrX 115714372 115715164 -46884766 + Tigger3(Golem) DNA MER2_type 2225 3027 -2 24 32 0 0 chrX 115715240 115715271 -46884659 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 115715326 115715347 -46884583 + AT_rich Low_complexity Low_complexity 1 21 0 6229 135 8 37 chrX 115715347 115716647 -46883283 - L1MA1 LINE L1 0 7721 6461 * 8381 167 12 3 chrX 115716646 115717005 -46882925 - L1PB1 LINE L1 0 6867 6513 690 47 0 0 chrX 115717005 115717091 -46882839 + (TA)n Simple_repeat Simple_repeat 2 87 0 8381 167 12 3 chrX 115717091 115718464 -46881466 - L1PB1 LINE L1 -354 6513 5107 288 0 0 0 chrX 115718464 115718496 -46881434 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8381 167 12 3 chrX 115718496 115719232 -46880698 - L1PB1 LINE L1 -1760 5107 4379 10764 187 102 11 chrX 115719240 115722496 -46877434 - L1PB1 LINE L1 -3135 3727 178 1140 196 0 9 chrX 115722488 115722712 -46877218 - L1MA1 LINE L1 -1081 6484 6263 * 2225 199 64 2 chrX 115722707 115723251 -46876679 - L1MA1 LINE L1 -2511 5054 4477 * 7824 221 36 13 chrX 115723250 115724869 -46875061 + L1M1 LINE L1 17 1673 -5892 7490 203 175 4 chrX 115724864 115726584 -46873346 - L1MA1 LINE L1 -5536 2029 16 * 498 326 42 25 chrX 115726927 115727166 -46872764 + MIR SINE MIR 7 249 -13 181 313 0 47 chrX 115728233 115728297 -46871633 - MIR3 SINE MIR -143 65 5 4394 197 52 6 chrX 115729096 115729208 -46870722 - L1MA9 LINE L1 -39 6273 6168 423 0 0 0 chrX 115729208 115729255 -46870675 + (TG)n Simple_repeat Simple_repeat 2 48 0 4394 197 52 6 chrX 115729255 115730242 -46869688 - L1MA9 LINE L1 -144 6168 5123 212 323 0 15 chrX 115730252 115730317 -46869613 - MIR SINE MIR -179 83 20 597 345 73 60 chrX 115730478 115731263 -46868667 + L2 LINE L2 2474 3272 0 1738 193 48 92 chrX 115731277 115731796 -46868134 + MLT1D LTR MaLR 1 496 -9 530 309 6 12 chrX 115731864 115732029 -46867901 - MER5A DNA MER1_type 0 189 26 1639 142 139 13 chrX 115733327 115733636 -46866294 - MER7A DNA MER2_type 0 346 1 222 37 0 0 chrX 115734800 115734827 -46865103 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1186 110 10 35 chrX 115734847 115735047 -46864883 - AluSg/x SINE Alu 0 312 118 3624 67 28 0 chrX 115735047 115735783 -46864147 - L1P3 LINE L1 -551 5603 4845 2746 53 0 0 chrX 115735783 115736121 -46863809 + L1PA7 LINE L1 5815 6152 -2 2800 88 10 0 chrX 115736121 115736496 -46863434 + L1PA13 LINE L1 5767 6155 -8 5120 207 13 47 chrX 115736511 115737827 -46862103 + L1P LINE L1 1432 2702 -3444 3400 114 14 14 chrX 115737820 115738196 -46861734 + L1P4 LINE L1 5102 5483 -678 * 2247 124 0 0 chrX 115738196 115738503 -46861427 + AluSx SINE Alu 1 307 -5 3400 114 14 14 chrX 115738503 115738786 -46861144 + L1P4 LINE L1 5483 5765 -396 * 7927 186 24 62 chrX 115738782 115740427 -46859503 + L1MA6 LINE L1 2671 4377 -1923 302 81 0 0 chrX 115740427 115740464 -46859466 + tRNA-Tyr-TAC tRNA tRNA 1 37 -39 6523 79 19 8 chrX 115740464 115741537 -46858393 + L1PA10 LINE L1 5084 6165 -3 7927 186 24 62 chrX 115741537 115743506 -46856424 + L1MA6 LINE L1 4375 6051 -249 2194 153 58 11 chrX 115743509 115744095 -46855835 + L1MCa LINE L1 1222 1923 -4503 581 244 25 0 chrX 115744107 115744226 -46855704 + FLAM_A SINE Alu 6 127 -15 11364 41 4 0 chrX 115744226 115745673 -46854257 + L1PA5 LINE L1 3989 5441 -713 5709 47 1 0 chrX 115745885 115746584 -46853346 + L1PA5 LINE L1 5449 6148 -6 2710 157 56 0 chrX 115746598 115747149 -46852781 + L1MCa LINE L1 1919 2499 -3927 655 292 43 35 chrX 115747357 115747614 -46852316 + MIR SINE MIR 2 260 -2 201 175 0 0 chrX 115748336 115748376 -46851554 + (CAT)n Simple_repeat Simple_repeat 1 40 0 217 275 17 50 chrX 115748425 115748545 -46851385 - L2 LINE L2 -70 3243 3128 405 286 37 82 chrX 115748745 115749014 -46850916 + MER102a DNA MER1_type 71 327 -3 631 257 42 139 chrX 115749458 115750240 -46849690 + L1MC4 LINE L1 7194 7899 -143 402 57 0 0 chrX 115750240 115750293 -46849637 + (CA)n Simple_repeat Simple_repeat 2 54 0 251 341 167 31 chrX 115750542 115750800 -46849130 + L2 LINE L2 2959 3251 -21 546 224 194 51 chrX 115752023 115752219 -46847711 + L2 LINE L2 3090 3313 0 307 255 48 55 chrX 115752223 115752368 -46847562 - MIR SINE MIR -1 261 118 814 252 56 5 chrX 115752502 115752716 -46847214 - MIR SINE MIR 0 262 38 21 36 0 0 chrX 115752792 115752820 -46847110 + AT_rich Low_complexity Low_complexity 1 28 0 260 186 274 29 chrX 115752863 115752965 -46846965 - MIR SINE MIR -57 205 79 406 295 0 0 chrX 115753308 115753413 -46846517 + MIR SINE MIR 73 177 -85 217 357 0 0 chrX 115753619 115753689 -46846241 - L2 LINE L2 -196 3076 3007 1574 207 120 13 chrX 115753697 115754073 -46845857 - MLT1D LTR MaLR -2 503 88 857 267 49 90 chrX 115754106 115754616 -46845314 - LTR33A LTR ERVL -28 495 7 273 57 0 0 chrX 115755287 115755322 -46844608 + (CA)n Simple_repeat Simple_repeat 2 36 0 303 28 0 0 chrX 115757348 115757384 -46842546 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 283 36 116 chrX 115757655 115757793 -46842137 - L2 LINE L2 -9 3263 3137 253 339 33 33 chrX 115759170 115759353 -46840577 + L2 LINE L2 2748 2930 -384 214 250 0 23 chrX 115759598 115759642 -46840288 + L2 LINE L2 3137 3179 -93 291 309 84 17 chrX 115759842 115760020 -46839910 + L2 LINE L2 2863 3052 -220 1448 208 23 51 chrX 115760318 115760669 -46839261 - MLT1A2 LTR MaLR -33 341 1 638 323 21 5 chrX 115760735 115760924 -46839006 + MIR SINE MIR 59 250 -12 209 296 28 84 chrX 115760942 115761084 -46838846 + L2 LINE L2 2937 3070 -202 519 214 10 0 chrX 115761439 115761537 -46838393 + MIR SINE MIR 48 146 -116 32 0 0 0 chrX 115761537 115761569 -46838361 + AT_rich Low_complexity Low_complexity 1 32 0 1022 163 105 116 chrX 115761633 115762063 -46837867 + MSTC LTR MaLR 4 428 0 338 274 169 60 chrX 115762783 115763115 -46836815 + L2 LINE L2 2945 3312 -1 254 360 0 0 chrX 115763330 115763441 -46836489 - MIR3 SINE MIR -1 207 97 201 294 25 67 chrX 115763620 115763739 -46836191 - L3 LINE CR1 -4 1573 1460 638 304 27 27 chrX 115764205 115764389 -46835541 + MIR3 SINE MIR 10 193 -15 310 346 109 73 chrX 115765629 115766057 -46833873 + L2 LINE L2 2804 3250 -22 1519 171 119 0 chrX 115766057 115766367 -46833563 + MER7A DNA MER2_type 2 346 0 310 346 109 73 chrX 115766367 115766389 -46833541 + L2 LINE L2 3250 3270 -2 200 317 30 111 chrX 115768249 115768511 -46831419 + L2 LINE L2 2971 3211 -61 382 350 66 27 chrX 115768549 115768732 -46831198 + L2 LINE L2 3078 3267 -5 607 186 48 91 chrX 115768939 115769149 -46830781 - L2 LINE L2 -9 3304 3104 753 284 56 35 chrX 115770436 115770986 -46828944 - L1ME4a LINE L1 -18 6103 5542 429 355 26 13 chrX 115771152 115771304 -46828626 - L2 LINE L2 -10 3262 3109 272 279 139 16 chrX 115771807 115771929 -46828001 - MIR SINE MIR -23 239 103 1423 35 0 0 chrX 115773300 115773470 -46826460 + L1PA4 LINE L1 5981 6150 -5 425 0 0 0 chrX 115773982 115774032 -46825898 - L1P LINE L1 -744 5410 5361 6095 41 3 0 chrX 115774032 115774803 -46825127 + L1PA4 LINE L1 5417 6194 0 1666 41 14 5 chrX 115774803 115775021 -46824909 + L1PA5 LINE L1 5770 5989 -165 5762 252 61 34 chrX 115775282 115776821 -46823109 - L1MEc LINE L1 -3911 2485 856 2424 113 8 21 chrX 115776821 115777201 -46822729 + THE1C LTR MaLR 1 375 0 5762 252 61 34 chrX 115777201 115778048 -46821882 - L1MEc LINE L1 -5540 856 34 279 327 50 20 chrX 115778505 115778606 -46821324 - MIR3 SINE MIR -92 116 13 1676 216 13 0 chrX 115779494 115779967 -46819963 + AluJb SINE Alu 1 477 0 252 143 0 0 chrX 115780617 115780673 -46819257 + (T)n Simple_repeat Simple_repeat 1 56 0 1838 194 75 45 chrX 115780755 115781245 -46818685 - MLT1D LTR MaLR 0 505 1 228 86 0 0 chrX 115782005 115782040 -46817890 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 271 344 132 9 chrX 115782042 115782269 -46817661 + L2 LINE L2 2613 2867 -447 212 252 9 90 chrX 115782987 115783098 -46816832 - L2 LINE L2 0 3272 3171 310 276 57 19 chrX 115783849 115783954 -46815976 + L2 LINE L2 2726 2834 -480 389 317 0 0 chrX 115784677 115784781 -46815149 - L2 LINE L2 0 3313 3210 298 326 38 108 chrX 115786769 115787057 -46812873 + L2 LINE L2 3004 3271 -1 195 365 0 0 chrX 115787185 115787259 -46812671 - L2 LINE L2 -58 3214 3141 407 314 0 0 chrX 115787871 115787976 -46811954 + L2 LINE L2 3150 3254 -18 2301 43 0 0 chrX 115788330 115788611 -46811319 - L1PA4 LINE L1 -3 6152 5872 22 0 0 0 chrX 115788681 115788703 -46811227 + AT_rich Low_complexity Low_complexity 1 22 0 203 210 175 98 chrX 115789064 115789207 -46810723 - L2 LINE L2 0 3313 3160 291 292 34 17 chrX 115789261 115789439 -46810491 + L1MC/D LINE L1 5644 5824 -1984 2219 94 3 27 chrX 115789444 115789743 -46810187 - AluY SINE Alu -19 292 1 21 0 0 0 chrX 115789859 115789880 -46810050 + AT_rich Low_complexity Low_complexity 1 21 0 854 327 153 46 chrX 115790041 115791020 -46808910 - L2 LINE L2 -337 2977 1831 1846 228 28 35 chrX 115791020 115791528 -46808402 + MLT1D LTR MaLR 2 505 0 854 327 153 46 chrX 115791528 115791812 -46808118 - L2 LINE L2 -1483 1831 1579 277 170 0 57 chrX 115792018 115792071 -46807859 - MIR SINE MIR -77 131 82 258 238 83 48 chrX 115792100 115792184 -46807746 + MIR SINE MIR 176 262 0 283 234 9 101 chrX 115792216 115792327 -46807603 + MIR SINE MIR 5 105 -103 227 188 24 82 chrX 115793942 115794027 -46805903 - MIR SINE MIR -68 194 115 4984 62 3 6 chrX 115794586 115795226 -46804704 + L1PA7 LINE L1 5512 6149 -5 1732 37 0 9 chrX 115795521 115795738 -46804192 - L1PA4 LINE L1 -1 6154 5940 355 305 26 26 chrX 115795813 115795964 -46803966 + MIR SINE MIR 53 203 -59 40853 44 8 1 chrX 115795966 115802073 -46797857 + L1PA4 LINE L1 1 6153 -2 389 282 110 72 chrX 115803366 115803685 -46796245 + MLT1I LTR MaLR 3 333 -76 209 227 0 0 chrX 115803750 115803794 -46796136 + (TTA)n Simple_repeat Simple_repeat 2 45 0 6778 70 0 0 chrX 115804310 115805274 -46794656 - L1PA7 LINE L1 -1 6153 5188 4426 62 40 4 chrX 115805274 115806356 -46793574 - MER11A LTR ERVK 0 1266 1 13311 88 2 5 chrX 115806356 115808337 -46791593 - L1PA7 LINE L1 -953 5193 3217 1921 114 8 0 chrX 115808338 115808600 -46791330 - AluSc SINE Alu -45 264 1 187 311 0 66 chrX 115809860 115809921 -46790009 + L2 LINE L2 3172 3228 -85 210 37 0 0 chrX 115810659 115810686 -46789244 + (TG)n Simple_repeat Simple_repeat 2 28 0 376 177 0 0 chrX 115811277 115811339 -46788591 + AluJ/FLAM SINE Alu 1 62 -240 3836 181 37 42 chrX 115861339 115862676 -46737254 - L1 LINE L1 -3008 4557 3230 1876 170 0 6 chrX 115862676 115862987 -46736943 - AluJb SINE Alu -3 309 1 3836 181 37 42 chrX 115862987 115863037 -46736893 - L1 LINE L1 -4335 3230 3181 17027 139 42 4 chrX 115863046 115866002 -46733928 - L1 LINE L1 -4457 3108 14 40285 37 21 1 chrX 115866474 115872502 -46727428 - L1PA3 LINE L1 0 6155 3 438 159 21 0 chrX 115872557 115872702 -46727228 + (TA)n Simple_repeat Simple_repeat 1 148 0 316 261 45 0 chrX 115872705 115872793 -46727137 - L1MC4 LINE L1 -1337 6705 6614 * 343 306 0 0 chrX 115872722 115872820 -46727110 + L1MC4 LINE L1 6615 6712 -1330 247 326 138 26 chrX 115873036 115873303 -46726627 + HAL1 LINE L1 238 544 -1963 1725 167 52 65 chrX 115873303 115873704 -46726226 - MSTD LTR MaLR 0 396 1 247 326 138 26 chrX 115873704 115873740 -46726190 + HAL1 LINE L1 544 575 -1932 1848 186 3 0 chrX 115874234 115874545 -46725385 - AluJo SINE Alu 0 312 1 641 115 10 0 chrX 115875112 115875208 -46724722 - Tigger7 DNA MER2_type -1 2486 2390 * 1088 219 105 4 chrX 115875206 115875444 -46724486 - Tigger7 DNA MER2_type -470 263 2 237 91 0 0 chrX 115875863 115875896 -46724034 + L2 LINE L2 3273 3305 -8 24 0 0 0 chrX 115876187 115876211 -46723719 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 115876273 115876302 -46723628 + AT_rich Low_complexity Low_complexity 1 29 0 751 238 6 18 chrX 115876371 115876535 -46723395 + MIR SINE MIR 32 193 -69 258 32 0 0 chrX 115876559 115876590 -46723340 + (TG)n Simple_repeat Simple_repeat 1 31 0 8079 125 23 4 chrX 115876666 115877942 -46721988 - HSMAR2 DNA Mariner -1 1301 2 3654 180 16 31 chrX 115878185 115878484 -46721446 - MER44D DNA MER2_type -1882 605 303 404 128 13 13 chrX 115878484 115878562 -46721368 - L1PA10 LINE L1 -6 6162 6085 3654 180 16 31 chrX 115878562 115879006 -46720924 - MER44D DNA MER2_type -2184 303 1 1686 227 78 23 chrX 115879159 115879943 -46719987 - L1ME3 LINE L1 -322 5840 5011 1987 128 7 11 chrX 115880373 115880655 -46719275 + AluSx SINE Alu 14 294 -18 3109 170 22 62 chrX 115881103 115882064 -46717866 + L1MA9 LINE L1 4907 5820 -492 7360 36 10 0 chrX 115882064 115882991 -46716939 + L1PA5 LINE L1 5218 6153 -1 3109 170 22 62 chrX 115882991 115883080 -46716850 + L1MA9 LINE L1 5820 5911 -401 6404 28 1 0 chrX 115883080 115883827 -46716103 - L1PA3 LINE L1 -3 6152 5405 9146 26 0 0 chrX 115883828 115884975 -46714955 + L1PA3 LINE L1 4243 5389 -757 1165 219 28 3 chrX 115885005 115885293 -46714637 + L1MA9 LINE L1 5980 6274 -38 23 0 0 0 chrX 115885397 115885420 -46714510 + AT_rich Low_complexity Low_complexity 1 23 0 184 333 61 0 chrX 115885727 115885793 -46714137 + L2 LINE L2 3201 3270 -2 201 179 268 0 chrX 115886445 115886501 -46713429 - L2 LINE L2 -9 3304 3234 312 315 132 51 chrX 115886665 115886900 -46713030 + L2 LINE L2 2550 2803 -511 534 384 29 7 chrX 115886975 115887282 -46712648 - L2 LINE L2 -448 2866 2553 217 362 37 87 chrX 115887393 115887716 -46712214 + L2 LINE L2 2957 3263 -9 239 233 150 23 chrX 115888838 115888971 -46710959 - L1ME4a LINE L1 -2 6119 5970 676 241 105 26 chrX 115889023 115889251 -46710679 + MIR SINE MIR 5 250 -12 4163 178 62 58 chrX 115889432 115890499 -46709431 - MER11C LTR ERVK 0 1071 1 977 304 83 22 chrX 115890837 115891199 -46708731 + L2 LINE L2 2930 3313 0 662 213 60 68 chrX 115891266 115891515 -46708415 + L1MC3 LINE L1 6995 7241 -544 203 0 0 36 chrX 115891531 115891559 -46708371 + (CCCCCG)n Simple_repeat Simple_repeat 4 30 0 1575 198 106 9 chrX 115891561 115891985 -46707945 + MLT1D LTR MaLR 30 494 -11 454 375 46 54 chrX 115892397 115892879 -46707051 + L2 LINE L2 2278 2755 -559 244 405 23 8 chrX 115892997 115893128 -46706802 + L2 LINE L2 2950 3082 -190 2041 138 0 0 chrX 115893128 115893441 -46706489 - AluJb SINE Alu 0 313 1 6777 9 1 0 chrX 115893478 115894279 -46705651 - L1PA2 LINE L1 0 6155 5354 * 7334 23 0 0 chrX 115894273 115895184 -46704746 + L1PA2 LINE L1 4446 5356 -790 1062 244 36 16 chrX 115895263 115895513 -46704417 - MIR SINE MIR -1 261 7 325 287 19 46 chrX 115895518 115895626 -46704304 + L2 LINE L2 3182 3286 -27 1488 136 140 4 chrX 115896839 115897104 -46702826 - AluJo SINE Alu 0 302 2 248 271 98 53 chrX 115897701 115897834 -46702096 - MIR3 SINE MIR -21 187 49 1938 165 140 16 chrX 115898375 115898824 -46701106 - MLT1D LTR MaLR 0 505 1 21 36 0 0 chrX 115898898 115898926 -46701004 + AT_rich Low_complexity Low_complexity 1 28 0 467 193 0 0 chrX 115899004 115899087 -46700843 + MER2 DNA MER2_type 1 83 -262 1727 192 78 21 chrX 115899105 115899578 -46700352 - L1MC4 LINE L1 -305 7737 7238 1566 217 107 34 chrX 115899579 115900133 -46699797 - L1MC4 LINE L1 -960 7082 6489 720 167 18 0 chrX 115900883 115900997 -46698933 - FLAM_C SINE Alu -17 116 1 459 0 0 0 chrX 115901585 115901636 -46698294 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2258 72 14 0 chrX 115901638 115901917 -46698013 - AluSp SINE Alu -30 283 1 1873 144 13 29 chrX 115902344 115902650 -46697280 - AluJb SINE Alu -11 301 1 1211 184 27 83 chrX 115903274 115903610 -46696320 - MER46C DNA MER2_type -13 325 9 207 284 127 52 chrX 115904082 115904216 -46695714 + MIR SINE MIR 78 221 -41 474 134 0 12 chrX 115904410 115904492 -46695438 + LTR41 LTR ERVL 1 81 -692 225 0 0 0 chrX 115904498 115904523 -46695407 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4681 40 0 0 chrX 115904539 115905096 -46694834 - L1PA5 LINE L1 -13 6141 5585 308 253 42 21 chrX 115905119 115905214 -46694716 + LTR41 LTR ERVL 70 166 -607 217 206 41 21 chrX 115905278 115905375 -46694555 + (TA)n Simple_repeat Simple_repeat 2 100 0 1001 224 77 108 chrX 115905455 115905898 -46694032 + LTR41 LTR ERVL 340 768 -5 2233 188 39 39 chrX 115908152 115908696 -46691234 + L1MB5 LINE L1 5585 6131 -43 810 38 0 19 chrX 115908696 115908802 -46691128 + L1PA8 LINE L1 6069 6172 0 2233 188 39 39 chrX 115908802 115908847 -46691083 + L1MB5 LINE L1 6130 6174 0 29 28 0 0 chrX 115909142 115909178 -46690752 + AT_rich Low_complexity Low_complexity 1 36 0 1435 167 110 19 chrX 115909179 115909442 -46690488 - AluJo SINE Alu -25 287 1 1950 141 7 0 chrX 115909682 115909966 -46689964 + AluJo SINE Alu 3 288 -24 273 163 0 0 chrX 115909968 115910017 -46689913 + GA-rich Low_complexity Low_complexity 1 49 0 2492 64 3 0 chrX 115910196 115910494 -46689436 + AluSp SINE Alu 1 299 -14 1063 266 0 30 chrX 115910616 115910883 -46689047 + MIR SINE MIR 3 261 -1 182 336 179 7 chrX 115910890 115911030 -46688900 + L2 LINE L2 2499 2662 -652 * 358 314 62 73 chrX 115911008 115911349 -46688581 + L2 LINE L2 2936 3272 0 432 0 0 0 chrX 115912337 115912385 -46687545 + (GA)n Simple_repeat Simple_repeat 2 49 0 485 311 109 56 chrX 115914238 115914560 -46685370 - L2 LINE L2 -33 3239 2901 22 35 0 0 chrX 115914793 115914822 -46685108 + AT_rich Low_complexity Low_complexity 1 29 0 266 311 87 56 chrX 115914822 115914983 -46684947 + MIR SINE MIR 1 166 -96 455 295 47 16 chrX 115918085 115918214 -46681716 + L2 LINE L2 3121 3253 -19 28 0 0 0 chrX 115918767 115918795 -46681135 + AT_rich Low_complexity Low_complexity 1 28 0 283 286 45 58 chrX 115920939 115921093 -46678837 - MIR SINE MIR -32 230 79 264 243 270 26 chrX 115921477 115921629 -46678301 + MER5A DNA MER1_type 1 189 0 21 57 0 0 chrX 115924409 115924444 -46675486 + AT_rich Low_complexity Low_complexity 1 35 0 259 290 0 14 chrX 115924682 115924751 -46675179 - L2 LINE L2 -4 3309 3242 2100 106 0 3 chrX 115925001 115925312 -46674618 + AluSx SINE Alu 2 311 0 386 331 43 14 chrX 115927190 115927329 -46672601 + MIR3 SINE MIR 32 174 -34 23 0 0 0 chrX 115927646 115927669 -46672261 + AT_rich Low_complexity Low_complexity 1 23 0 2070 136 0 0 chrX 115928543 115928844 -46671086 + AluSx SINE Alu 3 303 -9 264 77 0 0 chrX 115929019 115929058 -46670872 + (TG)n Simple_repeat Simple_repeat 2 40 0 229 213 0 21 chrX 115929484 115929531 -46670399 + (TATG)n Simple_repeat Simple_repeat 2 47 0 278 221 0 29 chrX 115930384 115930452 -46669478 + G-rich Low_complexity Low_complexity 1 66 0 180 0 0 0 chrX 115932940 115932960 -46666970 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 790 302 243 25 chrX 115935803 115936330 -46663600 - L3 LINE CR1 -11 1566 925 14113 33 2 5 chrX 115937046 115938772 -46661158 - L1PA4 LINE L1 -880 5266 3545 7049 37 11 0 chrX 115938772 115939638 -46660292 + L1PA4 LINE L1 5279 6154 -1 204 254 60 60 chrX 115939681 115939748 -46660182 - L2 LINE L2 -7 3265 3199 3316 5 0 0 chrX 115940026 115940399 -46659531 - L1HS LINE L1 0 6155 5783 3095 9 0 0 chrX 115940399 115940745 -46659185 + L1P1 LINE L1 5390 5735 -420 332 333 85 20 chrX 115941296 115941449 -46658481 - MIR SINE MIR -74 188 26 1797 259 126 20 chrX 115941930 115942009 -46657921 - MLT1E2 LTR MaLR 0 626 557 1742 130 61 4 chrX 115942009 115942167 -46657763 - AluJo SINE Alu -18 294 112 207 0 0 0 chrX 115942167 115942190 -46657740 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1742 130 61 4 chrX 115942190 115942308 -46657622 - AluJo SINE Alu -200 112 2 1797 259 126 20 chrX 115942308 115942783 -46657147 - MLT1E2 LTR MaLR -69 557 13 655 169 0 63 chrX 115943994 115944136 -46655794 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chrX 115945312 115945335 -46654595 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chrX 115945459 115945491 -46654439 + AT_rich Low_complexity Low_complexity 1 32 0 357 264 0 0 chrX 115945593 115945665 -46654265 + L2 LINE L2 3201 3272 0 1613 144 54 39 chrX 115945758 115946091 -46653839 + MER44D DNA MER2_type 2 609 0 233 365 48 37 chrX 115947000 115947189 -46652741 - L2 LINE L2 -693 2621 2431 27 29 0 0 chrX 115947956 115947990 -46651940 + AT_rich Low_complexity Low_complexity 1 34 0 342 195 0 0 chrX 115949774 115949851 -46650079 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 306 300 174 5 chrX 115950557 115950668 -46649262 + MIR SINE MIR 29 120 -142 8069 34 0 0 chrX 115950668 115952399 -46647531 - L1PA3 LINE L1 -3 6152 4420 306 300 174 5 chrX 115952399 115952477 -46647453 + MIR SINE MIR 120 250 -12 225 149 43 0 chrX 115953595 115953642 -46646288 + T-rich Low_complexity Low_complexity 6 54 0 2159 120 3 0 chrX 115953739 115954047 -46645883 - AluSq SINE Alu -4 309 1 235 221 59 29 chrX 115955095 115955163 -46644767 - L1M LINE L1 -2408 5400 5331 352 189 70 10 chrX 115956030 115956170 -46643760 - MER20 DNA MER1_type -1 218 30 210 260 151 0 chrX 115956875 115956948 -46642982 - L2 LINE L2 -4 3309 3226 190 311 0 0 chrX 115958236 115958281 -46641649 + MIR SINE MIR 218 262 0 464 242 48 32 chrX 115958860 115958984 -46640946 + L1MC1 LINE L1 6202 6327 -6 205 256 86 51 chrX 115959719 115959836 -46640094 + MIR3 SINE MIR 77 197 -11 663 68 11 0 chrX 115959987 115960075 -46639855 + L1PA7 LINE L1 8 96 -6365 * 27078 89 18 6 chrX 115960073 115965289 -46634641 + L1PA7 LINE L1 1162 6467 -2 731 247 44 6 chrX 115965658 115965840 -46634090 - MER5A DNA MER1_type 0 189 1 371 292 44 0 chrX 115965917 115966054 -46633876 + L1MC4a LINE L1 5707 5849 -1959 1848 168 9 52 chrX 115966087 115966510 -46633420 + L1MB8 LINE L1 5773 6177 -1 302 291 47 68 chrX 115967222 115967370 -46632560 + MIR3 SINE MIR 17 161 -47 3702 183 53 25 chrX 115968202 115968412 -46631518 - L1MB7 LINE L1 0 6184 5981 2068 133 144 5 chrX 115968412 115968788 -46631142 + MSTA LTR MaLR 1 428 0 3702 183 53 25 chrX 115968788 115969393 -46630537 - L1MB7 LINE L1 -203 5981 5346 367 145 0 0 chrX 115969462 115969524 -46630406 - L1MB7 LINE L1 -810 5336 5275 190 136 45 0 chrX 115969524 115969568 -46630362 + (TA)n Simple_repeat Simple_repeat 2 47 0 291 237 0 0 chrX 115969578 115969637 -46630293 - L1MB7 LINE L1 -874 5272 5214 193 407 33 0 chrX 115969784 115969875 -46630055 + L2 LINE L2 2884 2977 -336 2266 142 8 3 chrX 115969939 115970306 -46629624 - L1PA16 LINE L1 -14 6152 5784 183 298 70 0 chrX 115970320 115970377 -46629553 + L2 LINE L2 3023 3083 -189 2621 186 21 4 chrX 115970541 115971063 -46628867 - L1MA6 LINE L1 -968 5178 4648 * 5866 128 20 42 chrX 115971057 115972195 -46627735 + L1MA6 LINE L1 5193 6300 0 182 220 120 0 chrX 115972210 115972260 -46627670 + MIR SINE MIR 190 245 -17 530 251 0 55 chrX 115972322 115972485 -46627445 - MIR SINE MIR -50 212 59 5589 233 65 47 chrX 115973706 115973870 -46626060 - L1 LINE L1 -1777 4369 4210 855 128 0 0 chrX 115973870 115974034 -46625896 + (TTCC)n Simple_repeat Simple_repeat 3 166 0 5589 233 65 47 chrX 115974034 115974261 -46625669 - L1 LINE L1 -1936 4210 3989 1696 148 10 74 chrX 115974261 115974571 -46625359 - AluJo SINE Alu -21 291 2 5589 233 65 47 chrX 115974571 115976239 -46623691 - L1 LINE L1 -2157 3989 2270 1332 249 44 62 chrX 115976234 115976673 -46623257 - L1ME1 LINE L1 -4 6162 5728 * 198 118 0 0 chrX 115976945 115976979 -46622951 + (CGGGG)n Simple_repeat Simple_repeat 4 37 0 2422 56 16 0 chrX 115977032 115977338 -46622592 + AluY SINE Alu 1 311 0 1113 282 118 37 chrX 115977554 115978128 -46621802 - L1MEc LINE L1 -5716 680 60 565 179 43 17 chrX 115978248 115978365 -46621565 + AluJb SINE Alu 4 123 -189 298 348 92 18 chrX 115978807 115978971 -46620959 - L3 LINE CR1 -374 1203 1028 596 310 54 29 chrX 115980947 115981444 -46618486 + HAL1b LINE L1 1196 1316 -32 557 40 0 0 chrX 115981973 115982047 -46617883 + AluY SINE Alu 226 299 -10 234 190 0 17 chrX 115982835 115982893 -46617037 - L1MA8 LINE L1 -5 6286 6230 * 333 85 0 0 chrX 115982890 115982937 -46616993 - L1MA2 LINE L1 -81 6223 6177 2277 104 0 0 chrX 115984908 115985206 -46614724 + AluSp SINE Alu 1 298 -15 2324 93 3 0 chrX 115988043 115988355 -46611575 - AluSp SINE Alu 0 313 1 779 61 0 0 chrX 115989886 115989984 -46609946 + HY3 scRNA scRNA 1 98 -3 24 32 0 0 chrX 115990247 115990278 -46609652 + AT_rich Low_complexity Low_complexity 1 31 0 2246 89 10 0 chrX 115990366 115990668 -46609262 - AluSc SINE Alu -4 305 1 318 83 0 0 chrX 115991432 115991480 -46608450 + L1MA3 LINE L1 6258 6305 0 3136 55 5 2 chrX 115992428 115992825 -46607105 + L1PA7 LINE L1 5751 6148 -6 1470 49 0 0 chrX 115995789 115996008 -46603922 + L1PA7 LINE L1 5956 6174 0 327 182 95 0 chrX 115996036 115996114 -46603816 + AluSp SINE Alu 136 205 -98 441 0 0 0 chrX 115996116 115996165 -46603765 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 1784 100 7 7 chrX 115998295 115998566 -46601364 + L1MA2 LINE L1 6034 6304 0 270 0 0 0 chrX 115998696 115998726 -46601204 + (TG)n Simple_repeat Simple_repeat 1 30 0 1346 224 42 15 chrX 115999391 115999722 -46600208 - MER58B DNA MER1_type -1 340 1 22 0 0 0 chrX 115999927 115999949 -46599981 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 116000233 116000255 -46599675 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chrX 116000582 116000614 -46599316 + (GA)n Simple_repeat Simple_repeat 1 32 0 359 21 21 0 chrX 116001026 116001074 -46598856 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chrX 116001073 116001096 -46598834 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 1759 101 0 0 chrX 116002496 116002723 -46597207 + AluSg/x SINE Alu 68 294 -16 22 0 0 0 chrX 116006030 116006052 -46593878 + AT_rich Low_complexity Low_complexity 1 22 0 2421 96 58 6 chrX 116007178 116007522 -46592408 + THE1B LTR MaLR 3 364 0 858 240 141 59 chrX 116007592 116007896 -46592034 - MLT1J2 LTR MaLR -121 329 1 1708 167 90 0 chrX 116009419 116009730 -46590200 - MER58B DNA MER1_type 0 341 3 373 298 89 0 chrX 116009762 116009886 -46590044 - L2 LINE L2 0 3272 3138 285 244 104 55 chrX 116010269 116010433 -46589497 - MLT1L LTR MaLR -11 604 433 1065 245 9 0 chrX 116010811 116011027 -46588903 + Charlie1 DNA MER1_type 7 224 -2537 679 181 0 7 chrX 116011028 116011166 -46588764 + Charlie1 DNA MER1_type 2625 2761 0 320 200 12 0 chrX 116011295 116011380 -46588550 + (TA)n Simple_repeat Simple_repeat 1 86 0 354 269 124 21 chrX 116013862 116014104 -46585826 - L1MC5 LINE L1 -32 7929 7663 357 269 126 39 chrX 116014525 116014811 -46585119 - MLT1J1 LTR MaLR 0 446 136 2021 132 48 6 chrX 116015162 116015496 -46584434 - MER7A DNA MER2_type 0 346 1 546 259 93 31 chrX 116015981 116016174 -46583756 + MER63A DNA MER1_type 1 205 -5 1939 132 16 3 chrX 116017934 116018245 -46581685 + L1PB4 LINE L1 5818 6132 -24 15113 159 14 10 chrX 116019472 116022685 -46577245 - L1MA2 LINE L1 0 7723 4486 2015 136 0 7 chrX 116022685 116023004 -46576926 - AluSx SINE Alu 0 317 1 15113 159 14 10 chrX 116023004 116024207 -46575723 - L1MA2 LINE L1 -3237 4486 3289 40780 34 22 1 chrX 116024208 116030235 -46569695 + L1PA2 LINE L1 1 6155 0 17374 156 30 18 chrX 116030239 116030579 -46569351 - L1MA2 LINE L1 -4264 3301 2966 2364 102 52 17 chrX 116030579 116030941 -46568989 + THE1C LTR MaLR 1 375 0 17374 156 30 18 chrX 116030941 116032888 -46567042 - L1MA2 LINE L1 -4599 2966 962 1767 128 102 37 chrX 116032888 116033240 -46566690 - THE1C LTR MaLR 0 375 1 17374 156 30 18 chrX 116033240 116034193 -46565737 - L1MA2 LINE L1 -6603 962 22 193 272 185 12 chrX 116034816 116034897 -46565033 + MIR3 SINE MIR 91 185 -23 295 288 50 19 chrX 116034916 116035076 -46564854 + MER112 DNA MER1_type 96 260 0 275 276 46 0 chrX 116035342 116035429 -46564501 + MIR SINE MIR 102 192 -70 359 284 55 24 chrX 116035712 116035839 -46564091 + MIR SINE MIR 71 201 -61 334 254 0 85 chrX 116036222 116036340 -46563590 - MIR SINE MIR -78 184 77 1449 213 41 6 chrX 116036946 116037308 -46562622 + L1MD3 LINE L1 7611 7985 -10 187 333 46 23 chrX 116037551 116037638 -46562292 + MIR3 SINE MIR 108 196 -12 1798 193 178 26 chrX 116039072 116039625 -46560305 + MLT1E2 LTR MaLR 1 626 0 436 106 45 0 chrX 116039623 116039689 -46560241 - Tigger5 DNA MER2_type 0 2323 2255 * 381 244 0 0 chrX 116039734 116039812 -46560118 - Tigger5 DNA MER2_type -2245 78 1 877 299 72 36 chrX 116039828 116039934 -46559996 + L3 LINE CR1 1187 1288 -289 752 219 5 71 chrX 116039934 116040158 -46559772 + MER3 DNA MER1_type 1 209 0 877 299 72 36 chrX 116040158 116040186 -46559744 + L3 LINE CR1 1288 1314 -263 2308 90 30 0 chrX 116040186 116040487 -46559443 + AluY SINE Alu 1 310 -1 877 299 72 36 chrX 116040487 116040712 -46559218 + L3 LINE CR1 1314 1560 -17 320 180 146 11 chrX 116040925 116041014 -46558916 - L1MB5 LINE L1 -9 6165 6065 539 306 98 17 chrX 116041221 116041456 -46558474 + MIR SINE MIR 8 261 -1 533 323 19 6 chrX 116042537 116042695 -46557235 + MIR3 SINE MIR 22 181 -27 420 296 24 72 chrX 116042903 116042988 -46556942 - MIR SINE MIR -24 238 150 2576 110 13 8 chrX 116042988 116043361 -46556569 - THE1C LTR MaLR 0 375 1 420 296 24 72 chrX 116043361 116043513 -46556417 - MIR SINE MIR -112 150 15 21 0 0 0 chrX 116043523 116043544 -46556386 + AT_rich Low_complexity Low_complexity 1 21 0 416 333 54 0 chrX 116043585 116043732 -46556198 - MIR3 SINE MIR -51 157 3 1045 268 73 39 chrX 116043964 116044319 -46555611 + L2 LINE L2 2946 3312 -1 272 331 85 23 chrX 116044617 116044747 -46555183 - MIR3 SINE MIR -1 207 70 375 245 29 39 chrX 116044814 116044916 -46555014 - MER5B DNA MER1_type -15 163 63 754 312 46 4 chrX 116044936 116045173 -46554757 + MIR SINE MIR 16 262 0 204 225 28 14 chrX 116047995 116048066 -46551864 + T-rich Low_complexity Low_complexity 6 77 0 5654 34 0 1 chrX 116048070 116048744 -46551186 - L1PA5 LINE L1 -11 6143 5471 254 251 142 0 chrX 116048773 116048846 -46551084 - MIR SINE MIR -56 152 71 500 236 28 0 chrX 116049033 116049139 -46550791 + MIR3 SINE MIR 82 190 -18 332 255 260 39 chrX 116049828 116050032 -46549898 + MIR SINE MIR 1 249 -13 235 280 51 85 chrX 116050103 116050221 -46549709 + L2 LINE L2 3200 3313 0 210 313 90 42 chrX 116050257 116050401 -46549529 - MIR SINE MIR -111 151 1 190 284 172 26 chrX 116051957 116052073 -46547857 + MIR SINE MIR 117 249 -13 831 250 86 5 chrX 116052202 116052422 -46547508 + MIR SINE MIR 25 262 0 243 290 65 0 chrX 116052467 116052529 -46547401 + MIR SINE MIR 197 262 0 221 237 462 0 chrX 116052526 116052619 -46547311 - MIR SINE MIR -13 249 114 * 1875 163 0 10 chrX 116052629 116052917 -46547013 - AluJb SINE Alu -11 301 17 456 286 90 57 chrX 116053746 116053991 -46545939 - MIR SINE MIR -8 254 2 22 35 0 0 chrX 116054784 116054813 -46545117 + AT_rich Low_complexity Low_complexity 1 29 0 2020 127 4 0 chrX 116055967 116056243 -46543687 + AluSx SINE Alu 1 277 -35 216 0 0 0 chrX 116056243 116056267 -46543663 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 436 146 0 0 chrX 116057237 116057319 -46542611 - L1MA4 LINE L1 -9 6291 6210 263 333 25 12 chrX 116057319 116057400 -46542530 - L2 LINE L2 -1 3271 3190 829 260 17 0 chrX 116057431 116057612 -46542318 + MIR SINE MIR 6 189 -73 195 111 0 0 chrX 116057659 116057686 -46542244 - L2 LINE L2 -105 3208 3182 21 0 0 0 chrX 116057820 116057841 -46542089 + AT_rich Low_complexity Low_complexity 1 21 0 998 290 26 7 chrX 116057916 116058219 -46541711 - MLT1J LTR MaLR -202 309 1 653 212 285 26 chrX 116058352 116058545 -46541385 - MIR SINE MIR -3 259 17 278 346 78 13 chrX 116058811 116058964 -46540966 + MIR SINE MIR 2 164 -98 2872 140 37 4 chrX 116058984 116059497 -46540433 - L1MA6 LINE L1 -2 6298 5769 24 0 0 0 chrX 116059530 116059554 -46540376 + AT_rich Low_complexity Low_complexity 1 24 0 1895 58 0 8 chrX 116059560 116059801 -46540129 - L1PA5 LINE L1 -7 6147 5909 3154 135 28 8 chrX 116059801 116060673 -46539257 - L1MA6 LINE L1 -513 5787 4900 * 3911 150 25 3 chrX 116060669 116061414 -46538516 + L1MA6 LINE L1 4138 4899 -1247 2422 72 0 3 chrX 116061799 116062103 -46537827 - AluY SINE Alu -8 303 1 180 291 164 36 chrX 116062152 116062262 -46537668 + L2 LINE L2 2925 3048 -224 3206 16 0 0 chrX 116062416 116062782 -46537148 + L1PA2 LINE L1 5788 6153 -2 246 125 0 0 chrX 116062786 116062834 -46537096 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 186 307 67 13 chrX 116062838 116062913 -46537017 + L2 LINE L2 3184 3262 -10 354 349 27 14 chrX 116064656 116064802 -46535128 - MIR3 SINE MIR -58 150 3 215 231 13 77 chrX 116066216 116066294 -46533636 + MIR SINE MIR 125 197 -65 298 327 81 58 chrX 116066339 116066749 -46533181 + L2 LINE L2 2475 2893 -421 273 258 34 45 chrX 116066901 116066990 -46532940 + L3 LINE CR1 1479 1566 -11 223 303 211 9 chrX 116067366 116067475 -46532455 + L2 LINE L2 3141 3271 -1 216 259 19 0 chrX 116068064 116068118 -46531812 + CT-rich Low_complexity Low_complexity 2 56 0 360 59 0 0 chrX 116068699 116068750 -46531180 + (CA)n Simple_repeat Simple_repeat 2 52 0 522 252 0 26 chrX 116069392 116069507 -46530423 - L2 LINE L2 -11 3302 3191 205 291 35 58 chrX 116069944 116070030 -46529900 + L2 LINE L2 3180 3263 -9 198 143 0 0 chrX 116070038 116070073 -46529857 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 255 192 37 22 chrX 116070327 116070386 -46529544 - MER5A DNA MER1_type 0 189 121 1161 163 5 0 chrX 116070388 116070603 -46529327 + L1PB3 LINE L1 2446 2661 -4202 41727 43 3 1 chrX 116070603 116076749 -46523181 + L1PA3 LINE L1 2 6155 0 13289 182 35 8 chrX 116076765 116077021 -46522909 + L1PB3 LINE L1 2647 2895 -3975 1870 152 0 0 chrX 116077021 116077297 -46522633 + AluSx SINE Alu 1 276 -36 13289 182 35 8 chrX 116077297 116081155 -46518775 + L1PB3 LINE L1 2895 6869 -1 543 266 24 0 chrX 116081159 116081283 -46518647 - MER5A DNA MER1_type -51 138 12 6460 36 7 0 chrX 116081297 116082221 -46517709 - L1PA4 LINE L1 -663 5492 4564 5267 39 11 0 chrX 116082221 116082854 -46517076 + L1PA4 LINE L1 5506 6148 -7 259 56 37 37 chrX 116082857 116082871 -46517059 + (TAAAAA)n Simple_repeat Simple_repeat 6 19 -40 2758 23 0 0 chrX 116082871 116083179 -46516751 + AluYa5 SINE Alu 1 308 -3 259 56 37 37 chrX 116083179 116083218 -46516712 + (TAAAAA)n Simple_repeat Simple_repeat 18 59 0 13617 162 41 24 chrX 116083231 116084316 -46515614 - L1MA5 LINE L1 -11 6289 5224 2389 91 7 0 chrX 116084316 116084625 -46515305 - AluSp SINE Alu -2 311 1 13617 162 41 24 chrX 116084625 116086141 -46513789 - L1MA5 LINE L1 -1076 5224 3735 198 71 0 0 chrX 116086141 116086169 -46513761 + (TG)n Simple_repeat Simple_repeat 2 29 0 13617 162 41 24 chrX 116086169 116087612 -46512318 - L1MA5 LINE L1 -2565 3735 2177 644 118 36 0 chrX 116087623 116087733 -46512197 - L1MA3 LINE L1 -2 7722 7609 1031 211 77 3 chrX 116087734 116088033 -46511897 + L1 LINE L1 2468 2788 -3358 * 12695 179 18 20 chrX 116088023 116088597 -46511333 - L1MA3 LINE L1 -116 7608 7035 2073 129 0 0 chrX 116088597 116088891 -46511039 - AluSx SINE Alu -18 294 1 12695 179 18 20 chrX 116088891 116089179 -46510751 - L1MA3 LINE L1 -689 7035 6748 1827 109 53 32 chrX 116089179 116089463 -46510467 - AluSc SINE Alu -19 290 1 12695 179 18 20 chrX 116089463 116092488 -46507442 - L1MA3 LINE L1 -976 6748 3711 5072 167 15 4 chrX 116092494 116094203 -46505727 - L1PB1 LINE L1 -227 6640 4917 7461 112 66 1 chrX 116094203 116095708 -46504222 - L1PB1 LINE L1 -4230 2633 885 * 13828 162 19 2 chrX 116095702 116098135 -46501795 - L1MA3 LINE L1 -5090 2475 2 526 260 60 0 chrX 116098138 116098338 -46501592 - L1M2 LINE L1 -3959 2890 2679 474 280 0 8 chrX 116098348 116098480 -46501450 - L1M2 LINE L1 -6712 137 7 426 307 203 0 chrX 116098536 116098748 -46501182 + MIR SINE MIR 8 262 0 255 217 0 43 chrX 116099234 116099303 -46500627 + CT-rich Low_complexity Low_complexity 3 68 0 352 353 37 7 chrX 116099333 116099469 -46500461 + MER5A DNA MER1_type 2 141 -48 2298 114 0 0 chrX 116099479 116099785 -46500145 + AluSg SINE Alu 1 306 -4 193 260 0 20 chrX 116101037 116101087 -46498843 - MIR SINE MIR -174 88 40 194 374 122 0 chrX 116102013 116102128 -46497802 - MIR SINE MIR -114 148 20 244 86 0 0 chrX 116102134 116102169 -46497761 - MLT1B LTR MaLR 0 374 340 13249 136 25 8 chrX 116102177 116104426 -46495504 + Tigger1 DNA MER2_type 26 2312 -106 6842 49 0 17 chrX 116104433 116105402 -46494528 - L1PA7 LINE L1 -4 6150 5171 2987 90 2 15 chrX 116105403 116105870 -46494060 + L1PA7 LINE L1 4713 5173 -973 761 136 0 0 chrX 116105871 116105989 -46493941 + Tigger1 DNA MER2_type 2301 2418 0 * 1575 172 27 49 chrX 116105989 116106301 -46493629 - MLT1B LTR MaLR -32 358 54 873 226 84 75 chrX 116106301 116106659 -46493271 - MLT1A1 LTR MaLR -4 361 1 1575 172 27 49 chrX 116106659 116106712 -46493218 - MLT1B LTR MaLR -336 54 1 2484 60 3 0 chrX 116106832 116107130 -46492800 - AluY SINE Alu -12 299 1 222 171 0 0 chrX 116108833 116108868 -46491062 - L3 LINE CR1 -17 1560 1526 475 259 105 20 chrX 116108891 116109110 -46490820 + MIR SINE MIR 2 235 -27 399 241 57 18 chrX 116109118 116109268 -46490662 - MIR SINE MIR -69 139 2 522 312 14 0 chrX 116109603 116109741 -46490189 - MIR3 SINE MIR -58 150 11 180 0 0 0 chrX 116111333 116111353 -46488577 + (CA)n Simple_repeat Simple_repeat 1 20 0 201 278 42 42 chrX 116111472 116111544 -46488386 - L2 LINE L2 -6 3307 3236 206 366 45 9 chrX 116111643 116111755 -46488175 - L2 LINE L2 -254 3018 2903 2412 70 0 0 chrX 116111888 116112187 -46487743 - AluY SINE Alu -12 299 1 469 276 39 106 chrX 116113790 116114149 -46485781 - MLT1I LTR MaLR 0 409 75 270 0 0 0 chrX 116114343 116114373 -46485557 + (CA)n Simple_repeat Simple_repeat 2 31 0 366 258 10 21 chrX 116115169 116115266 -46484664 + MIR SINE MIR 21 116 -92 528 274 26 0 chrX 116115304 116115421 -46484509 - L2 LINE L2 0 3272 3153 35 41 0 0 chrX 116115848 116115897 -46484033 + AT_rich Low_complexity Low_complexity 1 49 0 436 351 0 53 chrX 116117016 116117187 -46482743 - L2 LINE L2 0 3272 3111 27 0 0 0 chrX 116117190 116117217 -46482713 + AT_rich Low_complexity Low_complexity 1 27 0 1685 178 75 3 chrX 116117457 116117777 -46482153 - MER2 DNA MER2_type 0 344 2 614 223 0 0 chrX 116118977 116119098 -46480832 + FLAM_C SINE Alu 2 122 -11 1428 202 8 8 chrX 116119106 116119373 -46480557 + AluJo SINE Alu 1 267 -45 880 252 74 51 chrX 116119611 116120450 -46479480 - L1ME3A LINE L1 -219 5951 5092 406 285 35 39 chrX 116122006 116122290 -46477640 - L1ME3A LINE L1 -3754 2392 2110 12673 39 1 1 chrX 116123124 116124761 -46475169 - L1PA3 LINE L1 -1883 4263 2626 9516 23 0 1 chrX 116124761 116126650 -46473280 + L1PA3 LINE L1 4261 6147 -8 579 283 106 28 chrX 116128330 116128477 -46471453 - LTR33 LTR ERVL -111 410 276 2384 116 34 6 chrX 116128477 116128831 -46471099 + THE1B LTR MaLR 1 364 0 579 283 106 28 chrX 116128831 116129017 -46470913 - LTR33 LTR ERVL -245 276 10 549 130 20 0 chrX 116129442 116129542 -46470388 - L1MB8 LINE L1 -8 6170 6069 2685 171 22 0 chrX 116129563 116130061 -46469869 - L1MB8 LINE L1 -194 5990 5482 1306 221 0 0 chrX 116130066 116130391 -46469539 - L1MB8 LINE L1 -908 5238 4914 7091 103 176 43 chrX 116133813 116135310 -46464620 - pTR5 LTR ERV1 0 2438 743 302 396 82 22 chrX 116136915 116137279 -46462651 + L2 LINE L2 2509 2894 -420 1032 279 12 0 chrX 116137519 116137763 -46462167 + MIR SINE MIR 2 248 -14 2066 128 4 0 chrX 116137772 116138073 -46461857 + AluSx SINE Alu 1 302 0 181 373 0 0 chrX 116138091 116138158 -46461772 + L2 LINE L2 3201 3267 -5 878 157 16 43 chrX 116138168 116138353 -46461577 - L1MB5 LINE L1 0 6174 5995 378 0 0 0 chrX 116139044 116139086 -46460844 + (TG)n Simple_repeat Simple_repeat 2 43 0 414 255 0 92 chrX 116140103 116140244 -46459686 + MIR SINE MIR 42 169 -93 692 309 36 0 chrX 116140324 116140573 -46459357 + MIR SINE MIR 5 262 0 42390 37 2 2 chrX 116140864 116147059 -46452871 + L1PA3 LINE L1 1 6195 0 1939 145 25 38 chrX 116147214 116147606 -46452324 - L1MB7 LINE L1 -11 6173 5787 452 225 174 0 chrX 116148192 116148330 -46451600 + MIR SINE MIR 88 249 -13 306 282 205 26 chrX 116148387 116148543 -46451387 + MIR SINE MIR 9 192 -70 1409 286 78 9 chrX 116148664 116149194 -46450736 + L2 LINE L2 2748 3313 0 311 281 151 22 chrX 116150079 116150218 -46449712 - MER5A DNA MER1_type -32 157 1 469 258 5 108 chrX 116150737 116150931 -46448999 - MER5A DNA MER1_type -15 174 1 261 0 0 0 chrX 116152920 116152949 -46446981 + (TG)n Simple_repeat Simple_repeat 2 30 0 545 269 84 35 chrX 116153065 116153292 -46446638 + MIR SINE MIR 8 245 -17 613 306 70 0 chrX 116153450 116153679 -46446251 + MIR SINE MIR 15 259 -3 288 0 0 0 chrX 116153861 116153893 -46446037 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 228 271 0 116 chrX 116153895 116153936 -46445994 - L2 LINE L2 -9 3304 3260 477 81 0 115 chrX 116153936 116154023 -46445907 - MADE1 DNA Mariner 0 80 4 228 271 0 116 chrX 116154023 116154110 -46445820 - L2 LINE L2 -53 3260 3191 301 337 11 11 chrX 116154856 116154948 -46444982 + L1ME LINE L1 5619 5710 -411 252 0 0 0 chrX 116155096 116155124 -46444806 + (TA)n Simple_repeat Simple_repeat 2 29 0 2618 48 0 3 chrX 116155124 116155434 -46444496 - AluY SINE Alu -2 309 1 714 181 118 0 chrX 116155592 116155719 -46444211 - MER5A DNA MER1_type -1 188 47 243 265 242 30 chrX 116155607 116155739 -46444191 + MER5A DNA MER1_type 29 188 -1 * 8970 174 31 15 chrX 116155800 116159190 -46440740 - L1MEd LINE L1 -1869 5696 2246 * 9611 182 14 4 chrX 116159186 116162054 -46437876 - L1PA15-16 LINE L1 -4399 2450 5 4117 186 43 22 chrX 116162070 116163305 -46436625 - L1MB8 LINE L1 -12 6166 4914 423 236 50 22 chrX 116163306 116163488 -46436442 - L1MB8 LINE L1 -1323 4823 4637 501 274 86 10 chrX 116163503 116163806 -46436124 - L1MB8 LINE L1 -1870 4276 3951 750 300 50 29 chrX 116163828 116164228 -46435702 - L1MEd LINE L1 -5705 1850 1441 315 269 0 0 chrX 116164270 116164337 -46435593 + L2 LINE L2 3246 3312 -1 242 364 78 56 chrX 116164378 116164900 -46435030 - L2 LINE L2 -831 2483 1950 1857 241 58 58 chrX 116168953 116169570 -46430360 - MLT1E2 LTR MaLR -7 619 1 21715 45 48 3 chrX 116170449 116173224 -46426706 + L1PA2 LINE L1 5 2903 -3243 19026 28 0 0 chrX 116173224 116176262 -46423668 + L1PA2 LINE L1 3112 6152 -3 347 310 66 20 chrX 116176488 116176642 -46423288 - MIR3 SINE MIR -46 162 2 2452 71 0 3 chrX 116177036 116177332 -46422598 + AluY SINE Alu 1 295 -16 296 280 76 61 chrX 116178335 116178467 -46421463 + MIR SINE MIR 29 162 -100 * 655 286 167 0 chrX 116178456 116178666 -46421264 - MIR SINE MIR -1 261 17 249 343 36 50 chrX 116178906 116179046 -46420884 + MIR SINE MIR 16 153 -55 260 276 10 61 chrX 116179818 116179916 -46420014 - MIR3 SINE MIR 0 208 116 1033 312 39 29 chrX 116179935 116180345 -46419585 - LTR16A LTR ERVL -21 429 16 887 325 107 16 chrX 116180382 116180996 -46418934 + L2 LINE L2 2591 3265 -7 705 266 73 32 chrX 116182167 116182385 -46417545 - MIR SINE MIR -12 250 24 433 274 145 32 chrX 116182900 116183370 -46416560 - L1MC5 LINE L1 -176 7785 7263 1748 130 110 26 chrX 116183876 116184222 -46415708 - THE1C LTR MaLR 0 375 1 272 348 87 7 chrX 116185351 116185489 -46414441 - L2 LINE L2 -4 3309 3161 1351 184 174 48 chrX 116186039 116186409 -46413521 - MLT1D LTR MaLR -8 497 68 3274 98 2 6 chrX 116186409 116186876 -46413054 - MER4C LTR ERV1 0 465 1 1351 184 174 48 chrX 116186876 116186919 -46413011 - MLT1D LTR MaLR -437 68 32 2187 124 0 0 chrX 116187352 116187650 -46412280 - AluSx SINE Alu -14 298 1 228 341 65 51 chrX 116188052 116188269 -46411661 - L2 LINE L2 -524 2790 2571 328 215 65 32 chrX 116188479 116188572 -46411358 - Charlie8 DNA MER1_type -2144 273 178 2156 129 0 0 chrX 116189161 116189464 -46410466 + AluSx SINE Alu 1 303 -9 378 0 0 0 chrX 116189912 116189954 -46409976 + (CA)n Simple_repeat Simple_repeat 2 43 0 238 143 36 232 chrX 116190184 116190296 -46409634 - MIR3 SINE MIR -21 187 98 2545 44 3 0 chrX 116191006 116191302 -46408628 - AluY SINE Alu -14 297 1 325 65 0 0 chrX 116192552 116192598 -46407332 + MADE1 DNA Mariner 35 80 0 24 0 0 0 chrX 116192751 116192775 -46407155 + AT_rich Low_complexity Low_complexity 1 24 0 192 40 0 0 chrX 116192952 116192977 -46406953 + (GA)n Simple_repeat Simple_repeat 2 26 0 181 158 26 0 chrX 116193066 116193104 -46406826 - MIR SINE MIR -26 236 198 543 294 185 0 chrX 116193120 116193331 -46406599 + MIR SINE MIR 13 262 0 418 268 101 30 chrX 116194098 116194266 -46405664 + L2 LINE L2 3132 3311 -2 848 291 35 8 chrX 116194291 116194545 -46405385 + MIR SINE MIR 1 261 -1 457 335 5 36 chrX 116195209 116195403 -46404527 - MIR3 SINE MIR -3 205 18 274 345 35 0 chrX 116195823 116195910 -46404020 - L2 LINE L2 0 3313 3224 2374 79 0 0 chrX 116196159 116196450 -46403480 + AluY SINE Alu 1 291 -20 247 252 78 0 chrX 116197123 116197238 -46402692 - L1ME4a LINE L1 -51 6070 5947 1145 299 107 19 chrX 116197238 116197971 -46401959 + L2 LINE L2 2509 3308 -5 236 286 155 38 chrX 116198209 116198422 -46401508 - MARNA DNA Mariner -338 248 11 258 32 0 0 chrX 116199670 116199701 -46400229 + (TG)n Simple_repeat Simple_repeat 1 31 0 349 227 55 0 chrX 116199760 116199870 -46400060 - L1ME4a LINE L1 -212 5909 5794 205 240 20 0 chrX 116200097 116200147 -46399783 + (TA)n Simple_repeat Simple_repeat 1 51 0 3233 201 25 2 chrX 116200147 116200775 -46399155 - MER82 DNA MER2_type 0 653 11 235 225 75 81 chrX 116200782 116200942 -46398988 - L1ME4a LINE L1 -164 5957 5799 1958 230 41 12 chrX 116200999 116201508 -46398422 + L1MC2 LINE L1 3843 4366 -1780 1779 168 0 10 chrX 116201520 116201824 -46398106 - L1M2 LINE L1 -563 5728 5428 20172 167 25 14 chrX 116201850 116209409 -46390521 - L1MA1 LINE L1 -9 7712 11 271 73 0 0 chrX 116209409 116209450 -46390480 - L1M2 LINE L1 -854 5446 5406 2692 147 37 24 chrX 116209454 116210000 -46389930 + L1MA7 LINE L1 5739 6291 0 5229 195 35 20 chrX 116210007 116211951 -46387979 + L1MC2 LINE L1 4375 6344 0 1580 189 24 63 chrX 116213791 116214171 -46385759 + MLT1A2 LTR MaLR 6 370 -4 1647 152 7 73 chrX 116215385 116215687 -46384243 - AluJo SINE Alu -25 287 6 2595 47 0 0 chrX 116215965 116216264 -46383666 - AluY SINE Alu -12 299 1 318 26 0 0 chrX 116217435 116217474 -46382456 + (TC)n Simple_repeat Simple_repeat 1 39 0 261 0 0 0 chrX 116217473 116217502 -46382428 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 187 233 23 0 chrX 116218026 116218069 -46381861 + MIR3 SINE MIR 124 167 -41 366 171 0 40 chrX 116218243 116218319 -46381611 - MER1B DNA MER1_type 0 333 261 * 1073 162 100 24 chrX 116218315 116218525 -46381405 - MER1B DNA MER1_type -71 226 1 884 90 0 0 chrX 116219472 116219583 -46380347 - AluY SINE Alu -200 111 1 262 292 62 0 chrX 116219616 116219681 -46380249 - MIR SINE MIR -162 100 32 553 293 22 17 chrX 116219958 116220139 -46379791 - MIR SINE MIR -29 233 52 23 0 0 0 chrX 116220482 116220505 -46379425 + AT_rich Low_complexity Low_complexity 1 23 0 1023 117 0 0 chrX 116221151 116221288 -46378642 - AluSq/x SINE Alu -174 138 2 533 254 82 0 chrX 116221927 116222061 -46377869 + MIR3 SINE MIR 57 201 -7 22 0 0 0 chrX 116223013 116223035 -46376895 + AT_rich Low_complexity Low_complexity 1 22 0 13511 216 30 31 chrX 116223039 116225909 -46374021 - L1PA15 LINE L1 -3 6813 3942 743 80 18 0 chrX 116225909 116226021 -46373909 + L1MB4 LINE L1 6053 6166 -14 13511 216 30 31 chrX 116226021 116227112 -46372818 - L1PA15 LINE L1 -2874 3942 2852 2317 86 0 23 chrX 116227112 116227416 -46372514 - AluY SINE Alu -14 297 1 13511 216 30 31 chrX 116227416 116229030 -46370900 - L1PA15 LINE L1 -3964 2852 1236 2276 289 35 22 chrX 116229143 116229858 -46370072 - L1PA15 LINE L1 -6063 724 1 374 191 0 0 chrX 116229863 116229931 -46369999 + ERVL LTR ERVL 2077 2144 -3620 210 281 0 0 chrX 116230115 116230172 -46369758 - L2 LINE L2 0 3313 3257 233 292 42 56 chrX 116231062 116231206 -46368724 - MIR SINE MIR -50 212 71 513 289 70 6 chrX 116231300 116231456 -46368474 - MIR SINE MIR -92 170 5 12602 157 25 18 chrX 116231765 116233216 -46366714 + L1PA8A LINE L1 1 1441 -5020 2185 114 7 3 chrX 116233216 116233513 -46366417 + AluSq SINE Alu 1 298 -15 12602 157 25 18 chrX 116233513 116235796 -46364134 + L1PA8A LINE L1 1441 3826 -2635 203 61 30 0 chrX 116235796 116235829 -46364101 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1362 109 0 36 chrX 116235829 116236050 -46363880 + L1PA6 LINE L1 5942 6154 0 * 11994 118 25 14 chrX 116236047 116238637 -46361293 + L1PA8A LINE L1 3826 6444 -2 7633 71 0 2 chrX 116241464 116243247 -46356683 - L1PA6 LINE L1 0 6154 4374 5633 99 44 112 chrX 116243400 116243607 -46356323 - Tigger3b DNA MER2_type -1802 1227 1007 684 195 0 0 chrX 116243607 116243725 -46356205 - FLAM_C SINE Alu -25 118 1 5633 99 44 112 chrX 116243725 116243818 -46356112 - Tigger3b DNA MER2_type -2022 1007 909 1923 169 13 0 chrX 116243818 116244119 -46355811 + AluJb SINE Alu 1 305 -7 5633 99 44 112 chrX 116244119 116245020 -46354910 - Tigger3b DNA MER2_type -2120 909 2 205 204 20 20 chrX 116245058 116245107 -46354823 + L2 LINE L2 3215 3263 -9 2129 133 0 0 chrX 116245375 116245669 -46354261 - AluSc SINE Alu -15 294 1 1204 150 19 27 chrX 116245758 116246018 -46353912 - L1MB3 LINE L1 0 6183 5926 295 211 16 36 chrX 116246218 116246377 -46353553 - L1M4 LINE L1 -5796 769 2 244 277 50 20 chrX 116246842 116246943 -46352987 + LTR40b LTR ERVL 229 332 -130 201 225 0 0 chrX 116247145 116247185 -46352745 + (TG)n Simple_repeat Simple_repeat 1 40 0 633 301 49 26 chrX 116247496 116247722 -46352208 - MIR SINE MIR -29 233 3 1439 133 24 0 chrX 116248121 116248332 -46351598 + AluSg/x SINE Alu 74 289 -23 28 48 0 0 chrX 116248332 116248374 -46351556 + AT_rich Low_complexity Low_complexity 1 42 0 1684 156 57 18 chrX 116248405 116248739 -46351191 + THE1C LTR MaLR 29 375 0 10136 103 16 67 chrX 116248739 116250405 -46349525 + THE1C-int LTR MaLR 1 1580 0 1882 159 52 25 chrX 116250405 116250770 -46349160 + THE1C LTR MaLR 1 375 0 2769 228 52 14 chrX 116250770 116251833 -46348097 - L1ME1 LINE L1 -41 6125 5019 3094 77 53 2 chrX 116251836 116252267 -46347663 - MLT2A2 LTR ERVL 0 453 1 6394 73 24 0 chrX 116252267 116253138 -46346792 - HERVL-A2 LTR ERVL 0 5654 4763 1480 188 25 35 chrX 116253143 116253541 -46346389 - L1ME1 LINE L1 -1131 5015 4622 4992 110 9 12 chrX 116253573 116254352 -46345578 - L1MA2 LINE L1 0 6304 5528 405 152 0 76 chrX 116254390 116254495 -46345435 - L1P LINE L1 -933 5213 5117 * 1085 271 32 27 chrX 116254493 116254932 -46344998 - L1ME1 LINE L1 -1823 4323 3883 352 215 102 102 chrX 116255201 116255378 -46344552 - L2 LINE L2 -13 3300 3124 243 346 49 0 chrX 116255477 116255558 -46344372 + MER91C DNA MER1_type 24 108 -32 579 348 100 44 chrX 116255566 116256289 -46343641 - L2 LINE L2 -233 3039 2272 331 356 22 22 chrX 116256291 116256471 -46343459 - L2 LINE L2 -711 2603 2424 2252 92 3 0 chrX 116257880 116258162 -46341768 + AluSp SINE Alu 1 283 -30 264 167 30 22 chrX 116258563 116258643 -46341287 - L1ME4a LINE L1 -53 6059 1218 857 144 0 22 chrX 116258776 116258915 -46341015 - AluJo SINE Alu -176 136 1 470 301 55 6 chrX 116259619 116259782 -46340148 + L2 LINE L2 2365 2535 -779 648 275 79 66 chrX 116259791 116260384 -46339546 + L1ME4a LINE L1 5519 6119 -2 1885 167 3 22 chrX 116261360 116261678 -46338252 - AluSx SINE Alu 0 312 1 188 297 264 0 chrX 116261884 116261975 -46337955 - L2 LINE L2 -7 3265 3151 359 226 43 61 chrX 116262476 116262591 -46337339 - L2 LINE L2 -4 3309 3197 449 300 128 22 chrX 116263693 116263966 -46335964 + L1ME4a LINE L1 5798 6099 -22 385 213 37 29 chrX 116263970 116264106 -46335824 - L1ME4a LINE L1 -16 6105 5969 21 57 0 0 chrX 116264122 116264157 -46335773 + AT_rich Low_complexity Low_complexity 1 35 0 965 264 52 36 chrX 116264548 116264793 -46335137 - L1ME3 LINE L1 -288 5890 5650 725 264 117 0 chrX 116264793 116264990 -46334940 + MER58A DNA MER1_type 1 220 -4 965 264 52 36 chrX 116264990 116265395 -46334535 - L1ME3 LINE L1 -528 5650 5236 372 299 112 15 chrX 116265410 116265607 -46334323 - L1ME3 LINE L1 -968 5178 4963 257 231 159 16 chrX 116265612 116265794 -46334136 - L1ME4a LINE L1 -226 5895 5688 235 338 13 13 chrX 116265886 116265963 -46333967 - L2 LINE L2 0 3272 3196 201 355 13 0 chrX 116266794 116266870 -46333060 - L2 LINE L2 -612 2702 2626 302 0 26 0 chrX 116266890 116266928 -46333002 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 185 192 0 19 chrX 116266984 116267036 -46332894 + CT-rich Low_complexity Low_complexity 1 51 0 312 244 122 26 chrX 116267047 116267162 -46332768 + L2 LINE L2 3181 3306 -7 213 163 0 0 chrX 116267490 116267539 -46332391 + (TAA)n Simple_repeat Simple_repeat 1 49 0 573 222 34 0 chrX 116268238 116268355 -46331575 - MIR3 SINE MIR -14 194 74 1631 134 25 1 chrX 116269166 116269571 -46330359 - L1M2 LINE L1 -741 5550 5137 30 0 0 0 chrX 116270121 116270151 -46329779 + AT_rich Low_complexity Low_complexity 1 30 0 1610 50 5 0 chrX 116270151 116270351 -46329579 - L1PA5 LINE L1 -8 6146 5946 353 211 19 58 chrX 116270725 116270829 -46329101 - L2 LINE L2 0 3272 3173 291 239 28 28 chrX 116272217 116272288 -46327642 + L2 LINE L2 3193 3263 -9 237 65 0 0 chrX 116272295 116272326 -46327604 + (TG)n Simple_repeat Simple_repeat 2 32 0 687 257 68 66 chrX 116272401 116272840 -46327090 - MLT1H LTR MaLR -6 543 1 848 285 84 34 chrX 116273818 116274141 -46325789 + L3 LINE CR1 1048 1386 -191 379 279 128 29 chrX 116274489 116274661 -46325269 - MIR3 SINE MIR -4 204 16 31 26 0 0 chrX 116274783 116274821 -46325109 + AT_rich Low_complexity Low_complexity 1 38 0 1552 154 124 0 chrX 116277008 116277281 -46322649 + AluJb SINE Alu 1 307 -5 293 373 31 12 chrX 116277296 116277457 -46322473 - MIR SINE MIR -70 192 29 873 215 27 11 chrX 116278158 116278344 -46321586 - MER5A DNA MER1_type 0 189 1 602 307 19 10 chrX 116278517 116278722 -46321208 + MIR SINE MIR 2 208 -54 676 229 153 0 chrX 116279443 116279600 -46320330 + MER5A DNA MER1_type 9 189 0 325 278 50 72 chrX 116279880 116280060 -46319870 + MER5B DNA MER1_type 1 176 -2 200 240 0 0 chrX 116280117 116280167 -46319763 + L2 LINE L2 3264 3313 0 192 317 133 8 chrX 116280173 116280293 -46319637 + L2 LINE L2 3167 3301 -12 264 278 14 14 chrX 116280318 116280390 -46319540 + MIR SINE MIR 31 102 -160 461 304 7 36 chrX 116280406 116280544 -46319386 - L2 LINE L2 0 3313 3180 28199 118 11 66 chrX 116280635 116283272 -46316658 + L1PA7 LINE L1 1 2784 -3370 210 37 0 0 chrX 116283272 116283299 -46316631 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 28199 118 11 66 chrX 116283299 116283517 -46316413 + L1PA7 LINE L1 2784 3013 -3141 2499 61 0 0 chrX 116283517 116283811 -46316119 - AluY SINE Alu -17 294 1 28199 118 11 66 chrX 116283811 116287484 -46312446 + L1PA7 LINE L1 3013 6152 -2 297 364 10 50 chrX 116287545 116287743 -46312187 - L2 LINE L2 -244 3028 2839 341 329 15 0 chrX 116288264 116288401 -46311529 + MIR SINE MIR 100 238 -24 261 215 13 51 chrX 116288447 116288526 -46311404 - L2 LINE L2 -79 3234 3159 308 324 14 0 chrX 116289063 116289208 -46310722 + (TG)n Simple_repeat Simple_repeat 1 147 0 35 24 0 0 chrX 116289349 116289391 -46310539 + AT_rich Low_complexity Low_complexity 1 42 0 227 263 36 95 chrX 116289393 116289530 -46310400 - L2 LINE L2 -332 2940 2812 500 103 83 0 chrX 116289536 116289692 -46310238 + (TA)n Simple_repeat Simple_repeat 1 169 0 697 55 79 9 chrX 116289722 116289943 -46309987 + (TA)n Simple_repeat Simple_repeat 1 236 0 370 300 53 54 chrX 116292038 116292233 -46307697 + MIR SINE MIR 3 204 -54 755 232 60 0 chrX 116292542 116292561 -46307369 - MER91B DNA MER1_type -10 180 164 180 77 0 0 chrX 116292561 116292587 -46307343 + (TG)n Simple_repeat Simple_repeat 1 26 0 755 232 60 0 chrX 116292587 116292735 -46307195 - MER91B DNA MER1_type -26 164 3 1769 236 56 17 chrX 116292904 116293371 -46306559 - MLT1E2 LTR MaLR -1 625 141 400 370 74 4 chrX 116293680 116293910 -46306020 + L2 LINE L2 2608 2853 -461 184 214 71 0 chrX 116294259 116294301 -46305629 + L2 LINE L2 3269 3313 0 818 187 0 0 chrX 116295606 116295729 -46304201 - AluJb SINE Alu -188 124 2 25 0 0 0 chrX 116295787 116295812 -46304118 + AT_rich Low_complexity Low_complexity 1 25 0 444 358 80 6 chrX 116295873 116296049 -46303881 - MIR3 SINE MIR -16 192 4 916 26 0 9 chrX 116296058 116296193 -46303737 - L1PA2 LINE L1 0 6155 6042 2580 37 0 3 chrX 116296798 116297097 -46302833 - AluY SINE Alu -13 298 1 3922 102 19 11 chrX 116297464 116298099 -46301831 - L1MA3 LINE L1 -58 6247 5608 * 7305 195 20 1 chrX 116298097 116299486 -46300444 - MSTA-int LTR MaLR -235 1416 1 2563 143 27 2 chrX 116299526 116299939 -46299991 - MSTA LTR MaLR -5 423 1 3611 135 4 24 chrX 116299939 116300624 -46299306 - L1PA12 LINE L1 -4468 3116 2438 3425 280 52 11 chrX 116300675 116301722 -46298208 - L1PA12 LINE L1 -6472 1109 20 2766 163 7 4 chrX 116301723 116302268 -46297662 - L1 LINE L1 -1432 4714 4168 1204 127 0 21 chrX 116302268 116302457 -46297473 + THE1B LTR MaLR 2 186 -178 2762 53 2 38 chrX 116302457 116302851 -46297079 + L1PA8 LINE L1 5527 5906 -266 679 79 0 20 chrX 116302855 116302956 -46296974 + L1PA8 LINE L1 6074 6172 0 1091 135 10 40 chrX 116302957 116303157 -46296773 + THE1B LTR MaLR 171 364 0 1713 194 120 5 chrX 116303157 116303574 -46296356 - L1 LINE L1 -1973 4173 3709 * 9626 154 26 35 chrX 116303573 116305559 -46294371 + L1M1 LINE L1 1316 3284 -4281 5253 98 13 4 chrX 116305564 116306312 -46293618 - L1PA10 LINE L1 -1 6482 5728 7498 31 10 0 chrX 116306313 116307262 -46292668 - L1PA4 LINE L1 0 6155 5203 16282 40 19 1 chrX 116307262 116309424 -46290506 + L1P LINE L1 1552 3752 -2394 * 21627 179 36 17 chrX 116309420 116314636 -46285294 - L1PA10 LINE L1 -740 5743 293 1111 233 65 18 chrX 116514637 116515077 -46084853 + L1P5 LINE L1 4998 5457 -694 7248 114 51 8 chrX 116515126 116516306 -46083624 - Tigger3b DNA MER2_type 0 1231 2 4179 183 38 57 chrX 116516404 116517245 -46082685 + L1M2a LINE L1 13 837 -6331 351 0 0 0 chrX 116517245 116517284 -46082646 + (CA)n Simple_repeat Simple_repeat 1 39 0 4179 183 38 57 chrX 116517284 116517357 -46082573 + L1M2a LINE L1 837 910 -6258 4966 108 13 87 chrX 116517357 116517609 -46082321 + Tigger3(Golem) DNA MER2_type 2166 2435 -593 454 145 0 0 chrX 116517609 116517692 -46082238 + L1PB4 LINE L1 6073 6155 -1 4966 108 13 87 chrX 116517692 116518362 -46081568 + Tigger3(Golem) DNA MER2_type 2435 3020 -8 886 276 67 18 chrX 116518369 116518865 -46081065 - L1M4 LINE L1 -3121 3025 2506 6959 26 0 2 chrX 116518870 116519707 -46080223 - L1PA3 LINE L1 0 6155 5341 * 9282 28 0 0 chrX 116519704 116520818 -46079112 + L1PA3 LINE L1 4230 5343 -803 306 226 73 16 chrX 116520816 116520940 -46078990 - L1M4 LINE L1 -3621 2525 2395 * 1673 174 14 10 chrX 116520948 116521242 -46078688 + AluJb SINE Alu 1 295 -17 2403 88 54 20 chrX 116521294 116521646 -46078284 - THE1B LTR MaLR 0 364 1 276 260 164 102 chrX 116522013 116522190 -46077740 - MIR3 SINE MIR -5 203 16 248 334 184 32 chrX 116523210 116523737 -46076193 - L2 LINE L2 -225 3047 2439 473 100 144 0 chrX 116524110 116524200 -46075730 - MER41B LTR ERV1 -88 547 445 26 0 0 0 chrX 116524226 116524252 -46075678 + AT_rich Low_complexity Low_complexity 1 26 0 689 176 127 86 chrX 116524705 116524955 -46074975 + MLT2D LTR ERVL 5 296 -118 306 155 48 19 chrX 116524971 116525074 -46074856 + CT-rich Low_complexity Low_complexity 5 110 0 23 0 0 0 chrX 116526369 116526392 -46073538 + AT_rich Low_complexity Low_complexity 1 23 0 3101 204 23 33 chrX 116526394 116527128 -46072802 - L1ME1 LINE L1 -5 6161 5435 5535 155 23 4 chrX 116527408 116529379 -46070551 + L1PA16 LINE L1 4120 6158 -8 5961 147 41 8 chrX 116529590 116530076 -46069854 - L1MA4 LINE L1 -2 6298 5829 333 0 0 0 chrX 116530076 116530113 -46069817 + (TG)n Simple_repeat Simple_repeat 2 38 0 5961 147 41 8 chrX 116530113 116531314 -46068616 - L1MA4 LINE L1 -471 5829 4553 3775 142 61 13 chrX 116531314 116532006 -46067924 + L1MA6 LINE L1 5561 6300 0 485 269 78 78 chrX 116532018 116532184 -46067746 + L1MC4a LINE L1 3038 3206 -2940 1588 147 54 47 chrX 116532184 116532463 -46067467 + AluJo SINE Alu 12 292 -20 485 269 78 78 chrX 116532463 116532604 -46067326 + L1MC4a LINE L1 3205 3345 -2801 313 340 190 0 chrX 116532605 116532873 -46067057 + L1MC4a LINE L1 5502 5820 -1988 1868 135 14 0 chrX 116532880 116533185 -46066745 + AluSx SINE Alu 1 309 0 1679 175 12 6 chrX 116533197 116533523 -46066407 + L1MB7 LINE L1 5674 6001 -183 3884 130 16 16 chrX 116533577 116533932 -46065998 - L1PB3 LINE L1 -6 6148 5794 414 0 0 0 chrX 116533932 116533978 -46065952 + (TG)n Simple_repeat Simple_repeat 2 47 0 3884 130 16 16 chrX 116533978 116534081 -46065849 - L1PB3 LINE L1 -360 5794 5692 2083 122 7 0 chrX 116534081 116534369 -46065561 - AluSx SINE Alu -20 292 3 3884 130 16 16 chrX 116534369 116534539 -46065391 - L1PB3 LINE L1 -461 5693 5519 673 144 0 24 chrX 116534539 116534663 -46065267 + L1MB7 LINE L1 6044 6165 -19 323 300 135 45 chrX 116534684 116534884 -46065046 + L1MC4a LINE L1 5814 6031 -1777 682 316 24 20 chrX 116535265 116535515 -46064415 - L3 LINE CR1 -5 1572 1322 210 71 0 0 chrX 116535524 116535552 -46064378 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chrX 116535676 116535697 -46064233 + AT_rich Low_complexity Low_complexity 1 21 0 482 262 79 18 chrX 116535967 116536131 -46063799 + MIR3 SINE MIR 33 206 -2 6622 219 82 51 chrX 116536870 116537932 -46061998 + L1MDa LINE L1 17 1045 -5495 2313 102 0 7 chrX 116537932 116538236 -46061694 + AluSx SINE Alu 1 302 -10 7673 21 0 3 chrX 116538236 116539421 -46060509 + L1PA4 LINE L1 4954 6149 -6 6622 219 82 51 chrX 116539421 116539939 -46059991 + L1MDa LINE L1 1045 1545 -4995 2326 104 5 70 chrX 116539939 116540353 -46059577 + L1PB1 LINE L1 5765 6151 0 6622 219 82 51 chrX 116540353 116540830 -46059100 + L1MDa LINE L1 1545 2140 -4400 848 204 244 0 chrX 116540830 116541060 -46058870 + L1MD2 LINE L1 6051 6336 -23 427 310 208 14 chrX 116541414 116541630 -46058300 - MIR SINE MIR 0 262 5 35165 31 3 17 chrX 116542023 116547255 -46052675 + L1PA4 LINE L1 1 6152 -3 1514 155 40 29 chrX 116547663 116547940 -46051990 + AluSx SINE Alu 1 280 -32 1031 81 0 7 chrX 116547943 116548091 -46051839 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 295 278 9 83 chrX 116549138 116549246 -46050684 + MIR3 SINE MIR 90 189 -19 325 293 107 107 chrX 116549445 116549759 -46050171 - L2 LINE L2 0 3272 2956 1663 112 88 88 chrX 116549759 116550134 -46049796 + THE1C LTR MaLR 1 375 0 325 293 107 107 chrX 116550134 116550259 -46049671 - L2 LINE L2 -315 2957 2833 677 281 118 8 chrX 116550393 116550631 -46049299 + MLT1J LTR MaLR 1 264 -247 211 227 197 0 chrX 116550697 116550763 -46049167 + L2 LINE L2 3190 3268 -4 1588 186 7 43 chrX 116552064 116552365 -46047565 + AluJo SINE Alu 1 290 -22 735 170 21 7 chrX 116552920 116553061 -46046869 + L1MB8 LINE L1 6033 6175 -3 243 295 0 0 chrX 116553186 116553247 -46046683 + (CA)n Simple_repeat Simple_repeat 2 62 0 1048 265 8 0 chrX 116553454 116553692 -46046238 + MIR SINE MIR 8 247 -15 2352 46 43 30 chrX 116554028 116554332 -46045598 - AluY SINE Alu -3 308 1 451 264 227 19 chrX 116555668 116555884 -46044046 - MIR SINE MIR 0 262 2 1922 144 27 10 chrX 116555913 116556205 -46043725 + AluJb SINE Alu 1 297 -15 1940 135 0 39 chrX 116556940 116557251 -46042679 - AluJo SINE Alu -13 299 1 348 167 0 0 chrX 116557864 116557918 -46042012 + L2 LINE L2 3256 3309 -4 874 163 0 15 chrX 116558027 116558162 -46041768 + FLAM_C SINE Alu 1 133 0 2323 107 0 0 chrX 116558503 116558812 -46041118 - AluSc SINE Alu 0 309 1 190 176 0 0 chrX 116559242 116559276 -46040654 - MIR SINE MIR -27 235 202 1182 206 55 36 chrX 116559280 116559610 -46040320 - MER46C DNA MER2_type -1 337 2 979 111 7 0 chrX 116559611 116559746 -46040184 + AluSq/x SINE Alu 1 136 -176 2312 85 0 31 chrX 116559746 116560065 -46039865 + AluSc SINE Alu 1 309 0 784 265 16 0 chrX 116560078 116560267 -46039663 - MIR SINE MIR -67 195 4 363 250 125 25 chrX 116560375 116560495 -46039435 - L2 LINE L2 0 3313 3182 223 322 0 0 chrX 116560637 116560696 -46039234 - L2 LINE L2 -3 3269 3211 841 261 85 71 chrX 116561499 116562057 -46037873 + L2 LINE L2 2736 3309 -4 399 249 128 101 chrX 116564613 116564950 -46034980 + L1M2 LINE L1 486 831 -6018 219 279 21 29 chrX 116564960 116565100 -46034830 + G-rich Low_complexity Low_complexity 3 141 0 839 241 100 17 chrX 116565552 116565793 -46034137 - MIR SINE MIR 0 262 2 1627 166 60 35 chrX 116567086 116567405 -46032525 + MLT1B LTR MaLR 64 390 0 2359 197 104 21 chrX 116567461 116568020 -46031910 - MLT1E1 LTR MaLR -47 607 3 347 60 20 0 chrX 116568097 116568147 -46031783 + (CA)n Simple_repeat Simple_repeat 1 51 0 244 241 0 17 chrX 116568388 116568446 -46031484 + L1ME1 LINE L1 572 628 -5768 * 1568 207 151 5 chrX 116568434 116568844 -46031086 + L1ME1 LINE L1 4483 4952 -1263 1416 142 81 8 chrX 116568840 116569101 -46030829 - L1MA7 LINE L1 -688 5603 5324 * 3806 139 32 26 chrX 116569101 116569749 -46030181 + L1MA7 LINE L1 5630 6286 -5 3634 200 43 32 chrX 116569755 116571027 -46028903 + L1ME1 LINE L1 4942 6230 -5 669 212 0 0 chrX 116571491 116571638 -46028292 + FLAM_A SINE Alu 1 147 0 235 298 0 0 chrX 116571678 116571735 -46028195 + MLT1K LTR MaLR 528 584 -4 681 178 0 67 chrX 116572203 116572279 -46027651 - AluJo/FRAM SINE Alu -16 296 230 2057 96 48 0 chrX 116572279 116572606 -46027324 + AluSx SINE Alu 1 340 0 681 178 0 67 chrX 116572606 116572663 -46027267 - AluJo/FRAM SINE Alu -82 230 171 2491 67 0 0 chrX 116572892 116573189 -46026741 - AluY SINE Alu -14 297 1 519 356 62 48 chrX 116573385 116573722 -46026208 + L2 LINE L2 2927 3268 -4 831 284 13 4 chrX 116574496 116574721 -46025209 - MIR SINE MIR -13 249 23 21 0 0 0 chrX 116574816 116574837 -46025093 + AT_rich Low_complexity Low_complexity 1 21 0 1925 148 10 7 chrX 116575073 116575371 -46024559 + AluSx SINE Alu 1 299 -13 1057 184 5 24 chrX 116575380 116575586 -46024344 + AluJo SINE Alu 2 203 -109 293 109 18 0 chrX 116575630 116575685 -46024245 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 25 31 0 0 chrX 116575685 116575717 -46024213 + AT_rich Low_complexity Low_complexity 1 32 0 243 205 72 96 chrX 116575717 116575800 -46024130 - MIR3 SINE MIR -1 207 127 744 315 60 55 chrX 116575839 116576392 -46023538 - L2 LINE L2 -5 3308 2750 2201 122 0 3 chrX 116576392 116576704 -46023226 + AluSx SINE Alu 1 311 -1 744 315 60 55 chrX 116576704 116576757 -46023173 - L2 LINE L2 -563 2750 2699 1207 194 73 78 chrX 116578730 116578776 -46021154 - MLT2D LTR ERVL 0 414 369 426 20 0 0 chrX 116578776 116578827 -46021103 + (CA)n Simple_repeat Simple_repeat 2 52 0 1207 194 73 78 chrX 116578827 116579355 -46020575 - MLT2D LTR ERVL -45 369 3 1473 166 7 49 chrX 116579697 116579981 -46019949 - AluJo SINE Alu -40 272 1 2375 82 3 0 chrX 116580788 116581081 -46018849 - AluSp SINE Alu -19 294 1 335 245 35 63 chrX 116581532 116581675 -46018255 + L2 LINE L2 1959 2097 -1217 420 358 53 0 chrX 116581684 116581910 -46018020 + L2 LINE L2 2392 2629 -685 * 834 248 31 5 chrX 116581895 116582117 -46017813 + MIR SINE MIR 33 260 -2 360 292 123 83 chrX 116582126 116582473 -46017457 + L2 LINE L2 2641 2973 -340 2146 133 0 0 chrX 116582473 116582775 -46017155 - AluSq SINE Alu -11 302 1 360 292 123 83 chrX 116582775 116583089 -46016841 + L2 LINE L2 2973 3313 0 2208 120 0 3 chrX 116583208 116583516 -46016414 - AluSg1 SINE Alu -2 307 1 251 376 9 0 chrX 116584273 116584382 -46015548 + MIR3 SINE MIR 58 167 -41 4072 200 87 49 chrX 116584382 116584845 -46015085 - L1MB1 LINE L1 -1 6188 5744 2256 117 0 0 chrX 116584845 116585143 -46014787 - AluSx SINE Alu -14 298 1 1681 157 23 27 chrX 116585147 116585447 -46014483 - AluJo SINE Alu -13 299 1 4072 200 87 49 chrX 116585447 116586971 -46012959 - L1MB1 LINE L1 -447 5742 4110 387 0 0 0 chrX 116587158 116587201 -46012729 + (TG)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chrX 116587201 116587221 -46012709 + (TTG)n Simple_repeat Simple_repeat 1 20 0 586 108 0 0 chrX 116587222 116587296 -46012634 - AluSq SINE Alu -48 265 192 1120 78 14 7 chrX 116587296 116587437 -46012493 - AluSq SINE Alu -170 142 1 1399 159 4 59 chrX 116587517 116587635 -46012295 + AluJo SINE Alu 12 135 -177 2164 96 0 0 chrX 116587635 116587905 -46012025 - AluSg SINE Alu -20 290 21 1399 159 4 59 chrX 116587905 116588057 -46011873 + AluJo SINE Alu 135 267 -45 279 0 0 0 chrX 116588079 116588110 -46011820 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 847 169 7 7 chrX 116588202 116588338 -46011592 + FLAM_C SINE Alu 2 137 -6 1436 185 3 57 chrX 116588340 116588654 -46011276 + AluJo SINE Alu 1 297 -15 22 0 0 0 chrX 116589452 116589474 -46010456 + AT_rich Low_complexity Low_complexity 1 22 0 556 208 10 0 chrX 116589950 116590046 -46009884 + FLAM_A SINE Alu 26 122 -20 333 109 0 0 chrX 116590907 116590962 -46008968 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1157 158 16 5 chrX 116590965 116591149 -46008781 - AluJb SINE Alu -23 289 104 481 256 119 93 chrX 116591155 116591541 -46008389 - L1ME3A LINE L1 -236 5934 5539 525 303 42 18 chrX 116591644 116591809 -46008121 + MIR3 SINE MIR 34 202 -6 221 294 118 12 chrX 116591800 116591885 -46008045 - MIR SINE MIR -113 149 56 * 486 261 0 36 chrX 116592308 116592446 -46007484 + L2 LINE L2 3180 3312 -1 217 273 126 56 chrX 116593566 116593709 -46006221 + L2 LINE L2 3159 3311 -2 21 0 0 0 chrX 116594006 116594027 -46005903 + AT_rich Low_complexity Low_complexity 1 21 0 288 222 61 10 chrX 116594982 116595081 -46004849 + L1ME4a LINE L1 6015 6118 -3 1652 159 22 53 chrX 116595081 116595401 -46004529 + AluJo SINE Alu 1 310 -2 2116 95 15 0 chrX 116595697 116595971 -46003959 + AluSp SINE Alu 1 278 -35 996 93 0 19 chrX 116595975 116596137 -46003793 + (GGAA)n Simple_repeat Simple_repeat 3 161 0 2093 129 3 0 chrX 116596228 116596522 -46003408 - AluSx SINE Alu -17 295 1 902 199 12 6 chrX 116597407 116597573 -46002357 + FRAM SINE Alu 1 167 -9 442 285 122 69 chrX 116597622 116598173 -46001757 + L2 LINE L2 2192 2771 -543 5176 100 16 12 chrX 116598278 116598966 -46000964 + LTR8 LTR ERV1 1 691 0 836 154 122 19 chrX 116599122 116599278 -46000652 - FAM SINE Alu 0 175 4 282 228 0 0 chrX 116599241 116599298 -46000632 - AluSc SINE Alu -125 174 118 1899 141 3 0 chrX 116599529 116599813 -46000117 - AluJb SINE Alu -27 285 1 1817 163 0 3 chrX 116600002 116600284 -45999646 - AluSx SINE Alu -29 283 3 259 195 0 69 chrX 116600362 116600449 -45999481 - L1ME4a LINE L1 -65 6056 5976 804 227 48 5 chrX 116600501 116600708 -45999222 - MIR SINE MIR -42 220 5 234 308 209 39 chrX 116600721 116600903 -45999027 + L2 LINE L2 2849 3061 -211 821 204 17 117 chrX 116601783 116602023 -45997907 + L2 LINE L2 2244 2459 -855 362 229 12 0 chrX 116602092 116602175 -45997755 + L2 LINE L2 2920 3003 -310 2179 100 0 4 chrX 116602423 116602723 -45997207 - AluSg SINE Alu 0 299 1 484 181 0 0 chrX 116602870 116602942 -45996988 - FLAM SINE Alu -26 117 46 1614 177 8 0 chrX 116603347 116603613 -45996317 + AluJo SINE Alu 1 268 -44 290 45 23 0 chrX 116603626 116603670 -45996260 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 686 194 91 46 chrX 116604265 116604440 -45995490 + MIR3 SINE MIR 23 205 -3 1562 165 9 86 chrX 116605962 116606289 -45993641 - AluJb SINE Alu -2 310 9 27 0 0 0 chrX 116606407 116606434 -45993496 + AT_rich Low_complexity Low_complexity 1 27 0 1388 246 56 69 chrX 116606442 116606962 -45992968 + Charlie8 DNA MER1_type 9 521 -1896 244 227 45 15 chrX 116606958 116607024 -45992906 + Charlie8 DNA MER1_type 1361 1428 -989 * 972 161 0 0 chrX 116607159 116607308 -45992622 + FRAM SINE Alu 1 146 -30 848 101 34 28 chrX 116607338 116607517 -45992413 + GA-rich Low_complexity Low_complexity 1 180 0 324 0 0 0 chrX 116607669 116607705 -45992225 + (CA)n Simple_repeat Simple_repeat 2 37 0 542 41 14 0 chrX 116608019 116608092 -45991838 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 1827 153 7 3 chrX 116608616 116608910 -45991020 - AluJo SINE Alu -7 305 11 680 269 11 29 chrX 116609097 116609169 -45990761 - MIR3 SINE MIR -2 206 134 2613 193 35 10 chrX 116609169 116609662 -45990268 - MLT1D LTR MaLR 0 505 1 680 269 11 29 chrX 116609662 116609764 -45990166 - MIR3 SINE MIR -74 134 35 483 272 41 24 chrX 116611183 116611352 -45988578 + MIR SINE MIR 77 248 -14 221 197 0 98 chrX 116611615 116611676 -45988254 - MIR3 SINE MIR -4 204 150 435 359 0 18 chrX 116611831 116611998 -45987932 - MIR3 SINE MIR -41 167 4 2919 53 9 0 chrX 116612543 116612883 -45987047 + L1PA7 LINE L1 5804 6146 -8 698 156 0 0 chrX 116612906 116613002 -45986928 + FLAM_C SINE Alu 27 122 -21 243 0 0 0 chrX 116613002 116613029 -45986901 + (GA)n Simple_repeat Simple_repeat 2 28 0 194 194 81 65 chrX 116613115 116613177 -45986753 + L2 LINE L2 3193 3255 -17 1968 123 9 35 chrX 116613289 116613605 -45986325 + AluSx SINE Alu 1 308 -4 619 181 61 37 chrX 116613812 116613971 -45985959 + MIR SINE MIR 3 163 -63 1180 228 121 105 chrX 116613984 116614473 -45985457 + MER21B LTR ERV1 13 520 -343 2139 125 16 0 chrX 116614473 116614776 -45985154 - AluSx SINE Alu -4 308 1 1180 228 121 105 chrX 116614776 116615032 -45984898 + MER21B LTR ERV1 520 770 -93 250 132 0 0 chrX 116615186 116615224 -45984706 + MIR SINE MIR 159 196 -66 456 19 0 0 chrX 116615403 116615456 -45984474 + (TC)n Simple_repeat Simple_repeat 2 54 0 812 165 0 0 chrX 116617424 116617545 -45982385 - FLAM_A SINE Alu -12 121 1 1094 233 57 8 chrX 116618456 116618701 -45981229 - MIR SINE MIR -3 259 3 2391 93 0 0 chrX 116618935 116619237 -45980693 + AluSx SINE Alu 1 302 -10 440 255 69 40 chrX 116619375 116619524 -45980406 + MIR SINE MIR 38 190 -65 673 178 8 59 chrX 116619697 116619815 -45980115 + FLAM_A SINE Alu 1 112 -30 195 42 0 0 chrX 116619815 116619839 -45980091 + (CA)n Simple_repeat Simple_repeat 1 24 0 250 229 0 0 chrX 116620187 116620235 -45979695 - L2 LINE L2 -6 3266 3219 1692 150 42 36 chrX 116620357 116620664 -45979266 + AluJo SINE Alu 4 312 0 656 217 87 57 chrX 116621038 116621268 -45978662 - L1ME3 LINE L1 0 6170 5934 2140 93 31 0 chrX 116621989 116622280 -45977650 + AluSg SINE Alu 1 300 -10 396 167 0 0 chrX 116622280 116622352 -45977578 + GA-rich Low_complexity Low_complexity 1 72 0 325 348 117 37 chrX 116622354 116622679 -45977251 - L2 LINE L2 -357 2957 2607 679 296 210 18 chrX 116622690 116623200 -45976730 - L2 LINE L2 -980 2334 1727 575 170 116 36 chrX 116623683 116623795 -45976135 + FLAM_A SINE Alu 1 121 -12 834 144 64 0 chrX 116623824 116623949 -45975981 - FLAM_C SINE Alu 0 133 1 353 191 12 48 chrX 116624054 116624138 -45975792 - L2 LINE L2 -4 3309 3229 236 315 134 27 chrX 116624302 116624451 -45975479 - MIR3 SINE MIR -9 199 35 2291 101 3 0 chrX 116625360 116625658 -45974272 + AluSx SINE Alu 1 299 -13 22 35 0 0 chrX 116625658 116625687 -45974243 + AT_rich Low_complexity Low_complexity 1 29 0 594 318 9 19 chrX 116626001 116626212 -45973718 - MIR SINE MIR -2 260 52 638 286 53 16 chrX 116626337 116626526 -45973404 - MIR SINE MIR -8 254 59 2965 136 2 12 chrX 116626601 116627028 -45972902 + MER61B LTR ERV1 3 425 0 414 324 133 9 chrX 116627570 116627780 -45972150 - MIR SINE MIR -6 256 21 232 236 101 11 chrX 116628500 116628589 -45971341 - LTR16B LTR ERVL -127 337 241 301 286 0 0 chrX 116628705 116628782 -45971148 - LTR16B LTR ERVL -381 83 7 582 263 152 48 chrX 116628795 116629084 -45970846 + L2 LINE L2 2995 3313 0 219 69 0 0 chrX 116629334 116629363 -45970567 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 212 250 76 22 chrX 116629562 116629654 -45970276 + MIR SINE MIR 102 198 -64 215 150 25 0 chrX 116629723 116629763 -45970167 + A-rich Low_complexity Low_complexity 1 41 0 219 226 75 0 chrX 116629920 116629973 -45969957 - MIR3 SINE MIR -1 207 151 264 251 145 34 chrX 116630289 116630410 -45969520 + MIR SINE MIR 13 147 -61 197 235 0 20 chrX 116631172 116631223 -45968707 + L2 LINE L2 3264 3313 0 1772 117 8 0 chrX 116631292 116631539 -45968391 + AluSq SINE Alu 1 249 -64 327 104 0 0 chrX 116631539 116631587 -45968343 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 279 214 204 10 chrX 116631791 116631889 -45968041 - MIR3 SINE MIR -6 202 86 392 280 68 0 chrX 116632355 116632473 -45967457 + L1MC5 LINE L1 5643 5768 -2040 4851 83 87 9 chrX 116632473 116632756 -45967174 + L1PA16 LINE L1 5435 5694 -472 4851 117 29 7 chrX 116632756 116633472 -45966458 + L1PA16 LINE L1 5435 6166 0 4851 83 87 9 chrX 116633472 116633553 -45966377 + L1PA16 LINE L1 5694 6166 0 524 143 0 0 chrX 116633553 116633637 -45966293 - AluS SINE Alu -4 307 224 2085 125 27 0 chrX 116633637 116633933 -45965997 + L1PB4 LINE L1 5852 6155 -1 1768 227 47 115 chrX 116633951 116634129 -45965801 + L1MC5 LINE L1 5759 5947 -2033 416 50 0 17 chrX 116634129 116634189 -45965741 + (CA)n Simple_repeat Simple_repeat 2 60 0 1768 227 47 115 chrX 116634189 116634584 -45965346 + L1MC5 LINE L1 5947 6367 -1613 1702 163 3 11 chrX 116634584 116634891 -45965039 - AluJb SINE Alu 0 307 3 1768 227 47 115 chrX 116634891 116635593 -45964337 + L1MC5 LINE L1 6367 6967 -1013 1958 136 17 17 chrX 116635593 116635894 -45964036 + AluJo SINE Alu 1 301 -11 1768 227 47 115 chrX 116635894 116636162 -45963768 + L1MC5 LINE L1 6967 7252 -728 292 346 0 12 chrX 116636166 116636328 -45963602 + L1MC4a LINE L1 7247 7406 -402 432 251 38 48 chrX 116637352 116637568 -45962362 - L1ME3A LINE L1 0 6170 5961 458 195 39 47 chrX 116637664 116637792 -45962138 - L1MC5 LINE L1 -431 7530 7404 2230 117 7 0 chrX 116638328 116638697 -45961233 + AluSx SINE Alu 1 371 0 417 264 130 50 chrX 116640174 116640675 -45959255 + L1M4 LINE L1 2638 3178 -2968 1549 186 3 17 chrX 116640676 116640966 -45958964 + AluJb SINE Alu 1 286 -26 198 0 0 0 chrX 116641289 116641311 -45958619 + (CA)n Simple_repeat Simple_repeat 2 23 0 21 82 0 0 chrX 116641311 116641360 -45958570 + AT_rich Low_complexity Low_complexity 1 49 0 452 100 0 17 chrX 116641482 116641542 -45958388 + Alu SINE Alu 4 62 -256 1009 209 29 9 chrX 116841796 116842006 -45757924 - MER20 DNA MER1_type -5 214 1 859 143 8 30 chrX 116843241 116843374 -45756556 - FLAM_A SINE Alu -2 131 2 2191 159 128 18 chrX 116843845 116844284 -45755646 + MLT1D LTR MaLR 12 498 -7 193 211 14 56 chrX 116844604 116844675 -45755255 - MIR3 SINE MIR -138 70 3 372 128 28 50 chrX 116845077 116845256 -45754674 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 608 104 35 38 chrX 116845273 116845567 -45754363 + (TATAA)n Simple_repeat Simple_repeat 1 292 0 301 148 66 16 chrX 116845569 116845630 -45754300 - MADE1 DNA Mariner -9 71 8 31 0 0 0 chrX 116845797 116845828 -45754102 + AT_rich Low_complexity Low_complexity 1 31 0 511 88 74 0 chrX 116845837 116845985 -45753945 + (TA)n Simple_repeat Simple_repeat 2 160 0 1041 176 162 4 chrX 116846535 116846807 -45753123 + MER33 DNA MER1_type 10 324 0 568 194 61 49 chrX 116846810 116846842 -45753088 + MIR SINE MIR 13 43 -219 2199 96 14 0 chrX 116846842 116847147 -45752783 - AluSx SINE Alu 0 309 1 568 194 61 49 chrX 116847147 116847295 -45752635 + MIR SINE MIR 43 197 -65 583 309 83 10 chrX 116847398 116847602 -45752328 + MIR SINE MIR 12 230 -32 319 191 16 0 chrX 116848117 116848180 -45751750 + MIR SINE MIR 185 248 -14 603 306 6 6 chrX 116848219 116848379 -45751551 - MIR SINE MIR -91 171 12 1806 147 3 31 chrX 116848493 116848786 -45751144 + AluJb SINE Alu 10 294 -18 438 302 43 0 chrX 116849516 116849632 -45750298 + L2 LINE L2 3152 3272 0 21 0 0 0 chrX 116850685 116850706 -45749224 + AT_rich Low_complexity Low_complexity 1 21 0 2255 104 0 19 chrX 116850728 116851046 -45748884 - AluSq SINE Alu -1 312 1 718 249 203 0 chrX 116851395 116851612 -45748318 + MIR SINE MIR 2 262 0 309 290 110 0 chrX 116851615 116851715 -45748215 - MIR SINE MIR -133 129 19 636 277 29 15 chrX 116851862 116852068 -45747862 - L2 LINE L2 -777 2537 2329 642 139 0 50 chrX 116852102 116852282 -45747648 + (TA)n Simple_repeat Simple_repeat 2 172 0 845 203 13 0 chrX 116852282 116852435 -45747495 + AluJb SINE Alu 130 284 -28 1579 259 54 14 chrX 116852451 116853030 -45746900 + L2 LINE L2 2702 3313 0 2540 69 0 0 chrX 116853167 116853519 -45746411 - AluY SINE Alu 0 352 1 2029 131 40 0 chrX 116853574 116853872 -45746058 - AluSx SINE Alu -2 310 1 1352 260 105 52 chrX 116853874 116854351 -45745579 + MLT1J LTR MaLR 9 510 -1 1965 129 14 4 chrX 116854474 116854754 -45745176 + AluSx SINE Alu 5 287 -25 2272 84 3 7 chrX 116854757 116855054 -45744876 + AluSg SINE Alu 1 296 -14 1626 138 28 32 chrX 116855146 116855428 -45744502 - MER50 LTR ERV1 -24 710 430 1451 97 16 69 chrX 116855420 116855530 -45744400 - MER50 LTR ERV1 -500 234 120 * 2152 123 0 17 chrX 116855530 116855831 -45744099 - AluSx SINE Alu -16 296 1 1451 97 16 69 chrX 116855831 116855967 -45743963 - MER50 LTR ERV1 -614 120 1 1319 115 15 168 chrX 116856115 116856454 -45743476 - L1MB8 LINE L1 -37 6141 5855 278 180 0 0 chrX 116856452 116856502 -45743428 + L1MB8 LINE L1 5778 5827 -357 * 4666 138 26 22 chrX 116856558 116856717 -45743213 - L1MB3 LINE L1 -3 6180 6023 1693 155 52 14 chrX 116856717 116857007 -45742923 + AluJb SINE Alu 1 301 -11 4666 138 26 22 chrX 116857007 116857618 -45742312 - L1MB3 LINE L1 -160 6023 5407 2493 61 0 26 chrX 116857703 116858014 -45741916 + AluY SINE Alu 1 303 -8 386 233 136 0 chrX 116858153 116858256 -45741674 - LTR16A LTR ERVL 0 450 334 308 213 16 0 chrX 116858260 116858321 -45741609 + Charlie1 DNA MER1_type 2700 2761 0 265 224 12 35 chrX 116858402 116858487 -45741443 + CT-rich Low_complexity Low_complexity 1 83 0 4876 113 161 140 chrX 116858600 116859888 -45740042 - pTR5 LTR ERV1 0 2438 1123 2290 107 3 0 chrX 116860095 116860395 -45739535 - AluSx SINE Alu -11 301 1 336 246 24 24 chrX 116860395 116860521 -45739409 - L1MC5 LINE L1 -232 7729 7604 361 242 21 113 chrX 116860729 116860814 -45739116 - L1MC5 LINE L1 -743 7218 7127 2024 155 0 7 chrX 116860814 116861118 -45738812 - AluJo SINE Alu -10 302 1 361 242 21 113 chrX 116861118 116861272 -45738658 - L1MC5 LINE L1 -834 7127 7001 761 164 5 87 chrX 116861333 116861541 -45738389 - AluJb SINE Alu -4 308 118 24 32 0 0 chrX 116862711 116862742 -45737188 + AT_rich Low_complexity Low_complexity 1 31 0 2297 93 7 0 chrX 116862876 116863165 -45736765 - AluSx SINE Alu -21 291 1 195 263 50 88 chrX 116863985 116864065 -45735865 + MIR3 SINE MIR 87 163 -45 366 195 39 0 chrX 116864069 116864146 -45735784 + MER116 DNA Mariner 1 80 0 476 267 68 92 chrX 116864159 116864410 -45735520 - MIR SINE MIR 0 262 18 331 298 16 50 chrX 116864969 116865090 -45734840 - MIR SINE MIR -62 146 30 1915 163 0 3 chrX 116865382 116865683 -45734247 + AluJo SINE Alu 1 300 -12 504 229 175 30 chrX 116866415 116866581 -45733349 - MIR SINE MIR -13 249 60 2388 84 10 0 chrX 116868131 116868429 -45731501 - AluSc SINE Alu -8 301 1 229 304 219 61 chrX 116868506 116868830 -45731100 - L2 LINE L2 -633 2681 2409 2118 120 38 0 chrX 116868830 116869122 -45730808 + AluSx SINE Alu 1 303 -9 229 304 219 61 chrX 116869122 116869323 -45730607 - L2 LINE L2 -905 2409 2073 242 374 44 0 chrX 116869730 116869821 -45730109 + MIR SINE MIR 32 126 -82 258 132 0 0 chrX 116870357 116870395 -45729535 - MER4A LTR ERV1 -73 591 554 21 36 0 0 chrX 116870404 116870432 -45729498 + AT_rich Low_complexity Low_complexity 1 28 0 1917 140 3 3 chrX 116870433 116870726 -45729204 + AluSx SINE Alu 1 293 -19 3037 221 88 22 chrX 116870733 116871701 -45728229 - L1ME2 LINE L1 -14 6150 5130 389 301 97 5 chrX 116872168 116872364 -45727566 + L2 LINE L2 2256 2469 -845 317 87 0 0 chrX 116872415 116872461 -45727469 + AluSc SINE Alu 254 299 0 * 1105 236 66 8 chrX 116872460 116872719 -45727211 - MER58B DNA MER1_type -39 302 29 923 126 0 30 chrX 116872807 116872942 -45726988 - FLAM_A SINE Alu -1 132 2 2025 94 12 60 chrX 116873015 116873334 -45726596 - AluSx SINE Alu -8 304 1 2253 108 0 3 chrX 116874059 116874356 -45725574 + AluSx SINE Alu 1 296 -16 800 142 0 28 chrX 116874428 116874569 -45725361 - AluJo SINE Alu -175 137 1 1856 146 30 10 chrX 116874651 116874953 -45724977 + AluJb SINE Alu 1 308 -4 457 288 50 7 chrX 116875066 116875205 -45724725 + L2 LINE L2 1308 1452 -1862 901 256 183 36 chrX 116875207 116875329 -45724601 + L2 LINE L2 2160 2263 -1051 2053 144 3 0 chrX 116875329 116875621 -45724309 + AluSx SINE Alu 1 293 -19 901 256 183 36 chrX 116875621 116875947 -45723983 + L2 LINE L2 2263 2674 -640 2289 74 7 19 chrX 116876124 116876433 -45723497 + AluY SINE Alu 1 305 -6 287 244 0 51 chrX 116876678 116876756 -45723174 - MER5C DNA MER1_type -248 76 3 21 0 0 0 chrX 116878151 116878172 -45721758 + AT_rich Low_complexity Low_complexity 1 21 0 1735 102 75 0 chrX 116878928 116879183 -45720747 - L1PB2 LINE L1 -12 6139 5866 715 52 0 42 chrX 116879385 116879481 -45720449 + L1PA8 LINE L1 6072 6163 -9 1605 124 128 0 chrX 116879962 116880212 -45719718 - AluSq SINE Alu -31 282 1 1417 170 116 4 chrX 116880587 116880886 -45719044 - AluJb SINE Alu 0 328 1 821 146 0 53 chrX 116881558 116881709 -45718221 - FLAM_C SINE Alu 0 143 1 1614 216 62 44 chrX 116882562 116883107 -45716823 - L1M4 LINE L1 -975 5171 4617 2349 205 105 24 chrX 116883126 116883823 -45716107 - L1M4 LINE L1 -1596 4550 3798 182 364 100 21 chrX 116883913 116884053 -45715877 - L2 LINE L2 -1 3271 3121 588 370 96 20 chrX 116884151 116884688 -45715242 - L2 LINE L2 -222 3050 2471 2058 184 25 8 chrX 116884705 116885064 -45714866 - MLT1A1 LTR MaLR 0 365 1 1955 186 90 16 chrX 116885064 116885488 -45714442 - MLT1C LTR MaLR -12 455 1 23 33 0 0 chrX 116885891 116885921 -45714009 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 116886003 116886032 -45713898 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chrX 116886184 116886233 -45713697 + AT_rich Low_complexity Low_complexity 1 49 0 928 129 0 65 chrX 116886736 116886906 -45713024 + L1MA6 LINE L1 6140 6298 -2 2175 110 3 0 chrX 116887059 116887349 -45712581 - AluSx SINE Alu -21 291 1 2391 69 0 28 chrX 116887785 116888105 -45711825 - AluY SINE Alu 0 311 1 861 201 6 6 chrX 116888694 116888858 -45711072 + FRAM SINE Alu 1 162 -14 4468 171 31 30 chrX 116889024 116889259 -45710671 - L1MB5 LINE L1 -9 6165 5932 1350 155 78 0 chrX 116889259 116889478 -45710452 + MER46A DNA MER2_type 1 236 0 4468 171 31 30 chrX 116889478 116889526 -45710404 - L1MB5 LINE L1 -242 5932 5886 2080 124 17 7 chrX 116889526 116889816 -45710114 - AluSx SINE Alu -19 293 1 4468 171 31 30 chrX 116889816 116890522 -45709408 - L1MB5 LINE L1 -288 5886 5174 1704 89 13 25 chrX 116890846 116891081 -45708849 + L1PA8A LINE L1 5888 6119 -12 22 56 0 0 chrX 116891844 116891880 -45708050 + AT_rich Low_complexity Low_complexity 1 36 0 975 204 22 35 chrX 116892233 116892464 -45707466 + MIR SINE MIR 20 247 -15 21 0 0 0 chrX 116893475 116893496 -45706434 + AT_rich Low_complexity Low_complexity 1 21 0 775 277 92 14 chrX 116893541 116893823 -45706107 + L1MC4a LINE L1 5564 5867 -1941 2257 119 0 0 chrX 116893832 116894143 -45705787 - AluSx SINE Alu -1 311 1 1725 133 0 71 chrX 116894151 116894459 -45705471 - AluJo SINE Alu -22 290 5 808 180 7 0 chrX 116894459 116894598 -45705332 - AluJo SINE Alu -172 140 1 1009 198 166 82 chrX 116894606 116894828 -45705102 + L1ME4a LINE L1 5613 5815 -306 1690 195 7 3 chrX 116894828 116895126 -45704804 + AluJo SINE Alu 1 299 -13 1009 198 166 82 chrX 116895126 116895289 -45704641 + L1ME4a LINE L1 5815 5963 -158 2427 97 0 0 chrX 116895289 116895597 -45704333 - AluSx SINE Alu -4 308 1 1009 198 166 82 chrX 116895597 116895674 -45704256 + L1ME4a LINE L1 5963 6115 -6 183 0 135 0 chrX 116895798 116895835 -45704095 + A-rich Low_complexity Low_complexity 4 45 0 206 264 128 68 chrX 116897832 116897980 -45701950 - L2 LINE L2 -2 3311 3155 242 254 0 0 chrX 116898059 116898118 -45701812 + L2 LINE L2 3253 3311 -2 4981 158 35 40 chrX 116898939 116898986 -45700944 + L1MB8 LINE L1 4613 4659 -1519 2075 119 3 3 chrX 116898986 116899295 -45700635 + AluSx SINE Alu 1 309 0 4981 158 35 40 chrX 116899295 116899956 -45699974 + L1MB8 LINE L1 4659 5322 -856 1741 161 32 0 chrX 116899956 116900235 -45699695 + AluJb SINE Alu 1 288 -24 4981 158 35 40 chrX 116900235 116901067 -45698863 + L1MB8 LINE L1 5322 6166 -12 357 98 98 0 chrX 116901507 116901568 -45698362 + L1PA16 LINE L1 6099 6165 -1 334 307 120 56 chrX 116902363 116902580 -45697350 + L2 LINE L2 2608 2857 -415 2082 134 7 13 chrX 116902580 116902913 -45697017 - AluSx SINE Alu 0 312 1 334 307 120 56 chrX 116902913 116903078 -45696852 + L2 LINE L2 2857 3010 -262 2380 89 0 0 chrX 116903605 116903898 -45696032 + AluSg SINE Alu 1 293 -17 2077 76 47 18 chrX 116904070 116904347 -45695583 + AluY SINE Alu 1 285 -26 213 146 0 21 chrX 116904610 116904628 -45695302 + (TAA)n Simple_repeat Simple_repeat 1 18 -29 2388 77 0 0 chrX 116904628 116904915 -45695015 + AluSx SINE Alu 1 287 -25 213 146 0 21 chrX 116904915 116904944 -45694986 + (TAA)n Simple_repeat Simple_repeat 18 47 0 609 219 31 0 chrX 116904946 116905074 -45694856 + L1PB4 LINE L1 6011 6142 -14 2324 108 3 0 chrX 116905096 116905401 -45694529 + AluSx SINE Alu 1 306 -6 648 272 109 20 chrX 116905668 116905870 -45694060 + MIR SINE MIR 22 241 -21 208 89 22 22 chrX 116906130 116906175 -45693755 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 325 269 104 71 chrX 116906427 116906534 -45693396 - L1M2 LINE L1 -748 5398 5296 2081 130 17 3 chrX 116906534 116906833 -45693097 - AluSx SINE Alu -9 303 1 325 269 104 71 chrX 116906833 116906963 -45692967 - L1M2 LINE L1 -850 5296 5172 2139 125 10 0 chrX 116906963 116907259 -45692671 - AluSx SINE Alu -13 299 1 325 269 104 71 chrX 116907259 116907488 -45692442 - L1M2 LINE L1 -974 5172 4943 2245 117 0 3 chrX 116907488 116907787 -45692143 + AluSx SINE Alu 1 298 -14 325 269 104 71 chrX 116907787 116907827 -45692103 - L1M2 LINE L1 -1203 4943 4906 2399 73 0 16 chrX 116908876 116909189 -45690741 - AluSc SINE Alu -1 308 1 210 246 246 14 chrX 116909875 116909944 -45689986 + MER5B DNA MER1_type 94 178 0 2298 102 0 3 chrX 116911014 116911309 -45688621 + AluSg SINE Alu 1 294 -16 564 116 0 0 chrX 116911309 116911395 -45688535 + (TA)n Simple_repeat Simple_repeat 2 87 0 302 229 66 41 chrX 116911395 116911517 -45688413 - HAL1b LINE L1 -1 1347 1223 486 277 145 41 chrX 116911796 116912190 -45687740 - HAL1b LINE L1 -613 735 301 1494 217 10 0 chrX 116912323 116912613 -45687317 - AluJo SINE Alu -19 293 1 2232 103 3 0 chrX 116912786 116913077 -45686853 - AluSx SINE Alu -9 303 12 479 265 54 108 chrX 116913527 116913861 -45686069 + Charlie8 DNA MER1_type 4 1404 -1013 242 314 29 91 chrX 116913933 116914108 -45685822 + L2 LINE L2 3019 3182 -90 2397 95 10 0 chrX 116914550 116914856 -45685074 - AluSx SINE Alu -3 309 1 1140 251 174 16 chrX 116914918 116915387 -45684543 + L2 LINE L2 2772 3313 0 225 0 0 0 chrX 116915658 116915683 -45684247 + (GA)n Simple_repeat Simple_repeat 1 25 0 1432 159 22 47 chrX 116916424 116916701 -45683229 + AluJb SINE Alu 35 304 -8 1133 298 47 41 chrX 116917240 116917867 -45682063 - L1MEc LINE L1 -3376 2839 2251 857 136 0 50 chrX 116917867 116918007 -45681923 - FLAM_C SINE Alu 0 133 1 1133 298 47 41 chrX 116918007 116918127 -45681803 - L1MEc LINE L1 -3964 2251 2133 444 191 27 75 chrX 116918157 116918304 -45681626 + MIR SINE MIR 123 262 0 2464 67 7 0 chrX 116918795 116919094 -45680836 + AluSq SINE Alu 1 301 -12 1121 194 0 39 chrX 116919869 116920152 -45679778 + pTR5 LTR ERV1 738 1009 -1429 2373 192 31 49 chrX 116920310 116920523 -45679407 - L1M4 LINE L1 -1573 4573 4358 2271 91 0 19 chrX 116920523 116920855 -45679075 - AluSx SINE Alu 0 312 1 2373 192 31 49 chrX 116920855 116921250 -45678680 - L1M4 LINE L1 -1788 4358 3976 252 279 0 15 chrX 116921527 116921595 -45678335 + L2 LINE L2 3157 3223 -49 1985 92 7 75 chrX 116921754 116922060 -45677870 + AluSx SINE Alu 1 285 -27 225 224 0 0 chrX 116922711 116922760 -45677170 - L2 LINE L2 0 3313 3265 1789 161 3 3 chrX 116923246 116923537 -45676393 + AluJb SINE Alu 1 291 -21 590 156 73 0 chrX 116923673 116923782 -45676148 - L1MA4A LINE L1 -17 6286 6170 505 118 97 0 chrX 116923785 116923878 -45676052 - L1MA4A LINE L1 -196 6107 6006 873 269 22 9 chrX 116924274 116924497 -45675433 + MIR SINE MIR 1 226 -36 818 153 25 49 chrX 116924498 116924661 -45675269 + FRAM SINE Alu 2 160 -16 204 40 0 0 chrX 116925049 116925074 -45674856 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2593 77 0 0 chrX 116925079 116925391 -45674539 - AluSx SINE Alu 0 312 1 1360 179 5 5 chrX 116926555 116926773 -45673157 + MER20 DNA MER1_type 2 219 0 300 218 136 54 chrX 116927271 116927373 -45672557 + L1M4 LINE L1 4494 4614 -1532 2165 87 18 0 chrX 116927373 116927698 -45672232 - AluSg SINE Alu 0 330 1 300 218 136 54 chrX 116927698 116927741 -45672189 + L1M4 LINE L1 4614 4652 -1494 721 172 0 23 chrX 116927746 116927874 -45672056 + FLAM_A SINE Alu 18 142 0 1337 122 45 27 chrX 116928112 116928334 -45671596 + AluSp SINE Alu 2 227 -86 411 192 144 29 chrX 116929014 116929118 -45670812 - L1MD3 LINE L1 0 7994 6244 431 211 233 43 chrX 116929369 116929601 -45670329 - L2 LINE L2 -40 3273 2998 242 328 0 0 chrX 116929746 116929810 -45670120 - MIR SINE MIR -72 136 73 566 253 20 40 chrX 116930038 116930188 -45669742 + MIR3 SINE MIR 41 187 -21 941 259 32 16 chrX 116930271 116930522 -45669408 - MIR SINE MIR 0 262 8 1886 142 31 0 chrX 116930652 116930940 -45668990 + AluSx SINE Alu 1 297 -15 255 316 97 13 chrX 116931049 116931204 -45668726 - L2 LINE L2 -234 3038 2871 2349 100 0 0 chrX 116931924 116932224 -45667706 + AluSx SINE Alu 1 300 -12 1260 182 74 12 chrX 116932265 116932507 -45667423 - MIR SINE MIR -4 258 2 2063 146 67 15 chrX 116932657 116933047 -45666883 - L1MB3 LINE L1 0 6183 5774 3420 164 2 55 chrX 116933047 116933557 -45666373 - L1PA5 LINE L1 -11 6143 5659 3855 182 39 5 chrX 116933558 116934920 -45665010 - L1MB3 LINE L1 -277 6142 4739 * 7207 168 47 36 chrX 116934917 116936202 -45663728 - L1MB3 LINE L1 -1925 4457 3188 2012 137 31 0 chrX 116936202 116936495 -45663435 - AluSx SINE Alu -10 302 1 7207 168 47 36 chrX 116936495 116936984 -45662946 - L1MB3 LINE L1 -3194 3188 2706 189 0 0 0 chrX 116936984 116937005 -45662925 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 7207 168 47 36 chrX 116937005 116937250 -45662680 - L1MB3 LINE L1 -3676 2706 2465 1539 173 10 67 chrX 116937250 116937580 -45662350 - AluJo SINE Alu 0 313 1 7207 168 47 36 chrX 116937580 116938144 -45661786 - L1MB3 LINE L1 -3917 2465 22 4434 152 8 21 chrX 116938868 116939438 -45660492 - L1PA16 LINE L1 0 6166 5605 2133 137 0 0 chrX 116939438 116939744 -45660186 - AluSx SINE Alu -6 306 1 4434 152 8 21 chrX 116939744 116939884 -45660046 - L1PA16 LINE L1 -561 5605 5465 605 133 12 2 chrX 116940209 116940313 -45659617 - L1MD3 LINE L1 0 7993 6247 1506 155 31 81 chrX 116940590 116940912 -45659018 - AluJb SINE Alu -6 306 1 777 251 32 72 chrX 116941024 116941166 -45658764 + MIR SINE MIR 13 142 -120 1794 157 34 3 chrX 116941166 116941460 -45658470 + AluSx SINE Alu 1 303 -9 777 251 32 72 chrX 116941460 116941568 -45658362 + MIR SINE MIR 142 253 -9 1516 146 0 43 chrX 116942536 116942789 -45657141 - AluSx SINE Alu -70 242 1 1770 148 47 0 chrX 116944214 116944492 -45655438 - AluJb SINE Alu -20 292 2 998 173 44 75 chrX 116944688 116944914 -45655016 - MER20 DNA MER1_type 0 219 1 341 193 88 61 chrX 116945245 116945359 -45654571 - L2 LINE L2 0 3313 3197 28 0 0 0 chrX 116945386 116945414 -45654516 + AT_rich Low_complexity Low_complexity 1 28 0 270 160 0 0 chrX 116945419 116945469 -45654461 + (CA)n Simple_repeat Simple_repeat 2 51 0 1170 232 8 8 chrX 116945846 116946083 -45653847 + MIR SINE MIR 3 239 -23 297 0 0 0 chrX 116946084 116946117 -45653813 + (TG)n Simple_repeat Simple_repeat 2 34 0 327 64 85 11 chrX 116946132 116946226 -45653704 + (TA)n Simple_repeat Simple_repeat 1 101 0 1783 141 67 0 chrX 116946460 116946729 -45653201 + AluSx SINE Alu 1 287 -25 1933 162 0 0 chrX 116946983 116947285 -45652645 - AluSx SINE Alu -10 302 1 3699 173 72 42 chrX 116948010 116948821 -45651109 - L1MD2 LINE L1 -2 6357 5523 2207 131 0 0 chrX 116948871 116949176 -45650754 - AluSx SINE Alu -7 305 1 182 322 139 0 chrX 116949362 116949477 -45650453 - L2 LINE L2 -5 3308 3178 208 316 5 87 chrX 116950205 116950411 -45649519 + L2 LINE L2 2720 2908 -406 327 267 121 109 chrX 116950477 116950799 -45649131 + L2 LINE L2 2940 3265 -7 376 230 175 40 chrX 116951451 116951577 -45648353 - MER91A DNA MER1_type -36 160 18 1769 162 25 3 chrX 116951657 116951941 -45647989 - AluJb SINE Alu -22 290 1 921 191 80 30 chrX 116952004 116952203 -45647727 - MER3 DNA MER1_type 0 209 1 794 208 81 36 chrX 116952250 116952471 -45647459 + MIR SINE MIR 32 262 0 2460 65 0 0 chrX 116952477 116952768 -45647162 + AluY SINE Alu 1 291 -20 204 40 0 0 chrX 116952774 116952799 -45647131 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2348 106 3 0 chrX 116953059 116953370 -45646560 - AluSx SINE Alu 0 312 1 326 285 26 46 chrX 116954154 116954305 -45645625 + MER5A DNA MER1_type 35 182 -7 2147 105 26 3 chrX 116955371 116955675 -45644255 + AluSx SINE Alu 1 311 -1 2332 112 0 0 chrX 116955801 116956113 -45643817 - AluSx SINE Alu 0 312 1 2736 124 40 3 chrX 116956655 116957067 -45642863 - MSTC LTR MaLR -1 414 1 227 272 110 44 chrX 116957342 116957478 -45642452 + MIR SINE MIR 77 221 -41 1792 117 19 0 chrX 116957902 116958159 -45641771 - AluJb SINE Alu -15 297 36 1974 145 40 0 chrX 116958168 116958492 -45641438 - L1MB2 LINE L1 -5 6166 5830 2111 151 42 3 chrX 116958869 116959200 -45640730 + MER2 DNA MER2_type 1 344 0 935 293 151 20 chrX 116959654 116960111 -45639819 - L2 LINE L2 0 3313 2793 1979 92 28 28 chrX 116961047 116961330 -45638600 + L1PA11 LINE L1 5892 6174 0 691 265 98 26 chrX 116961389 116961623 -45638307 - MIR SINE MIR 0 262 12 575 260 79 23 chrX 116961654 116961831 -45638099 - MIR SINE MIR -4 258 72 2183 230 97 49 chrX 116963003 116963222 -45636708 - L1ME3 LINE L1 -2 6160 5953 1961 107 0 55 chrX 116963222 116963532 -45636398 - AluSx SINE Alu -19 293 1 2183 230 97 49 chrX 116963532 116964549 -45635381 - L1ME3 LINE L1 -209 5953 4864 22 0 0 0 chrX 116964626 116964648 -45635282 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 116965111 116965132 -45634798 + AT_rich Low_complexity Low_complexity 1 21 0 1462 186 25 7 chrX 116965381 116965660 -45634270 + AluJb SINE Alu 1 284 -28 1878 186 16 16 chrX 116965788 116966158 -45633772 + MLT1C LTR MaLR 73 442 -25 908 202 85 75 chrX 116966160 116966444 -45633486 - MLT1F1 LTR MaLR -280 287 6 381 291 123 54 chrX 116966552 116966755 -45633175 + MIR SINE MIR 27 243 -19 273 248 75 75 chrX 116968356 116968489 -45631441 - MIR3 SINE MIR -23 185 53 360 302 7 36 chrX 116968600 116968739 -45631191 + MER5A DNA MER1_type 54 188 -1 2096 113 7 13 chrX 116968911 116969213 -45630717 + AluSx SINE Alu 1 300 -12 2091 131 0 7 chrX 116970427 116970732 -45629198 + AluSx SINE Alu 1 303 -9 2284 92 23 3 chrX 116971361 116971667 -45628263 - AluSq SINE Alu -1 312 1 2780 257 127 15 chrX 116972121 116972223 -45627707 - L2 LINE L2 -17 3296 3207 198 103 0 0 chrX 116972223 116972252 -45627678 + (CA)n Simple_repeat Simple_repeat 2 30 0 2780 257 127 15 chrX 116972252 116973313 -45626617 - L2 LINE L2 -106 3207 2022 189 0 0 0 chrX 116973760 116973781 -45626149 + (T)n Simple_repeat Simple_repeat 1 21 0 394 108 0 54 chrX 116973794 116973868 -45626062 - L1MB3 LINE L1 -1 6182 6113 1764 149 12 99 chrX 116973868 116974190 -45625740 + AluJo SINE Alu 1 294 -8 235 136 0 0 chrX 116974202 116974246 -45625684 - LTR66 LTR ERVL -172 438 395 * 240 139 0 0 chrX 116974207 116974250 -45625680 + LTR66 LTR ERVL 394 436 -174 1755 150 14 3 chrX 116974251 116974544 -45625386 - L1MB4 LINE L1 -65 6115 5820 1062 226 11 41 chrX 116975122 116975388 -45624542 + MIR SINE MIR 3 260 -2 584 238 10 89 chrX 116975668 116975870 -45624060 - MER5A DNA MER1_type -3 186 1 874 281 19 23 chrX 116975950 116976210 -45623720 - MIR SINE MIR -2 260 2 336 233 0 35 chrX 116976376 116976462 -45623468 + L1MC4a LINE L1 5518 5600 -521 458 274 79 12 chrX 116976710 116976874 -45623056 + L1ME4a LINE L1 5944 6118 -3 332 303 101 39 chrX 116976898 116977106 -45622824 - L2 LINE L2 -685 2629 2409 2099 177 96 3 chrX 116977645 116978030 -45621900 - MSTA LTR MaLR 0 428 8 36 40 0 0 chrX 116978692 116978742 -45621188 + AT_rich Low_complexity Low_complexity 1 50 0 1894 103 4 11 chrX 116978744 116979006 -45620924 + AluSg SINE Alu 35 294 -16 930 129 0 0 chrX 116979012 116979136 -45620794 - AluJb SINE Alu -188 124 1 6047 141 30 44 chrX 116979734 116980820 -45619110 - MER11C LTR ERVK 0 1071 1 1367 226 88 0 chrX 116980916 116981221 -45618709 + MER58B DNA MER1_type 7 338 -3 561 261 67 42 chrX 116981232 116981466 -45618464 - L1ME4a LINE L1 -295 5826 5582 1316 136 112 9 chrX 116981466 116981680 -45618250 + MER46A DNA MER2_type 1 236 0 561 261 67 42 chrX 116981680 116981729 -45618201 - L1ME4a LINE L1 -539 5582 5536 463 264 88 6 chrX 116981710 116981892 -45618038 + L1MC4a LINE L1 5734 5930 -1878 * 352 316 26 9 chrX 116981950 116982064 -45617866 - L1ME4a LINE L1 -2248 5560 5445 242 311 43 19 chrX 116982367 116982528 -45617402 - L1P LINE L1 -1093 5053 4889 3169 220 36 14 chrX 116982597 116983323 -45616607 - L1ME1 LINE L1 -9 6157 5416 188 265 0 108 chrX 116983440 116983481 -45616449 - MIR3 SINE MIR -15 193 164 744 208 235 11 chrX 116983481 116983664 -45616266 - MER58A DNA MER1_type 0 224 1 188 265 0 108 chrX 116983664 116983705 -45616225 - MIR3 SINE MIR -44 164 120 2147 107 0 0 chrX 116984965 116985277 -45614653 + AluSx SINE Alu 1 312 0 2217 90 36 3 chrX 116987542 116987843 -45612087 + AluY SINE Alu 1 311 0 591 343 74 5 chrX 116988767 116988983 -45610947 - MIR SINE MIR -6 256 26 2342 85 7 0 chrX 116989132 116989437 -45610493 - AluSp SINE Alu -6 307 1 348 234 61 7 chrX 116989581 116989700 -45610230 + MIR3 SINE MIR 56 180 -28 376 208 117 0 chrX 116989768 116989845 -45610085 + MIR3 SINE MIR 112 197 -11 938 207 68 11 chrX 116990162 116990618 -45609312 + MLT1E2 LTR MaLR 24 581 -45 480 231 176 31 chrX 116990619 116990978 -45608952 - HAL1 LINE L1 -128 2379 1969 390 311 83 57 chrX 116991661 116992047 -45607883 + L2 LINE L2 1840 2235 -1079 * 748 310 25 67 chrX 116992042 116992231 -45607699 + L2 LINE L2 2853 3048 -265 2110 80 7 31 chrX 116992231 116992519 -45607411 - AluSg SINE Alu -7 303 23 748 310 25 67 chrX 116992519 116992635 -45607295 + L2 LINE L2 3048 3167 -146 1862 81 119 8 chrX 116992635 116992896 -45607034 - AluSg1 SINE Alu -19 290 1 748 310 25 67 chrX 116992896 116993069 -45606861 + L2 LINE L2 3167 3312 -1 353 334 78 51 chrX 116993249 116993581 -45606349 + L2 LINE L2 2507 2847 -467 249 304 43 0 chrX 116994270 116994339 -45605591 - L2 LINE L2 0 3272 3201 664 219 107 32 chrX 116995635 116995822 -45604108 + MIR SINE MIR 4 204 -58 529 177 165 37 chrX 116995830 116995994 -45603936 - L1MB7 LINE L1 -13 6167 5981 336 206 0 14 chrX 116996002 116996075 -45603855 + MIR SINE MIR 186 257 -5 387 301 137 14 chrX 116996751 116996897 -45603033 - MIR3 SINE MIR -7 201 38 2194 95 14 3 chrX 116997219 116997504 -45602426 + AluSg SINE Alu 1 288 -22 579 108 49 0 chrX 116998575 116998677 -45601253 - L1MA4A LINE L1 -25 6278 6172 1920 145 3 14 chrX 117000533 117000830 -45599100 - AluJb SINE Alu -18 294 1 516 178 9 126 chrX 117000930 117001144 -45598786 - L1MC5 LINE L1 -49 7912 7724 324 0 0 0 chrX 117001443 117001479 -45598451 + (TG)n Simple_repeat Simple_repeat 2 37 0 241 256 57 85 chrX 117001999 117002175 -45597755 - L1MC5 LINE L1 -68 7893 7723 2331 104 3 0 chrX 117002423 117002731 -45597199 + AluSx SINE Alu 3 311 -1 207 0 0 0 chrX 117002909 117002932 -45596998 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2210 73 17 20 chrX 117003284 117003584 -45596346 + AluSx SINE Alu 1 299 -13 180 135 0 0 chrX 117005310 117005347 -45594583 + (C)n Simple_repeat Simple_repeat 1 37 0 2291 72 3 3 chrX 117006054 117006345 -45593585 + AluY SINE Alu 1 291 -20 347 250 61 28 chrX 117006655 117006835 -45593095 - L1MB7 LINE L1 0 6184 5999 28 61 0 0 chrX 117007003 117007052 -45592878 + AT_rich Low_complexity Low_complexity 1 49 0 1821 154 3 27 chrX 117008354 117008647 -45591283 + AluJo SINE Alu 3 288 -24 320 325 61 0 chrX 117008918 117009032 -45590898 + MIR SINE MIR 19 139 -69 723 173 92 17 chrX 117009132 117009305 -45590625 + MER5A DNA MER1_type 1 186 -3 251 300 200 0 chrX 117009330 117009470 -45590460 + MIR3 SINE MIR 40 207 -1 191 280 20 0 chrX 117010410 117010460 -45589470 - MIR SINE MIR -66 142 92 1911 164 7 0 chrX 117011061 117011360 -45588570 - AluJb SINE Alu -11 301 1 474 295 158 51 chrX 117011638 117011937 -45587993 + L3 LINE CR1 844 1208 -369 2294 105 0 16 chrX 117011937 117012242 -45587688 + AluSx SINE Alu 1 300 -12 474 295 158 51 chrX 117012242 117012390 -45587540 + L3 LINE CR1 1208 1339 -238 183 222 22 22 chrX 117012463 117012508 -45587422 + L3b LINE CR1 1532 1576 -7 480 233 201 31 chrX 117012752 117012852 -45587078 + MER5A DNA MER1_type 4 86 -103 2237 91 3 7 chrX 117012852 117013148 -45586782 + AluSx SINE Alu 1 295 -17 480 233 201 31 chrX 117013148 117013206 -45586724 + MER5A DNA MER1_type 86 189 0 2061 151 0 3 chrX 117013248 117013553 -45586377 + AluJo SINE Alu 1 304 -8 549 246 87 0 chrX 117014066 117014192 -45585738 + L2 LINE L2 3136 3272 0 297 200 122 0 chrX 117014581 117014671 -45585259 - L1ME LINE L1 -715 5447 5347 187 193 349 24 chrX 117014731 117014814 -45585116 - MER5B DNA MER1_type -67 111 2 664 263 208 33 chrX 117014815 117015077 -45584853 - L3 LINE CR1 -44 1533 1188 2119 128 0 7 chrX 117015077 117015374 -45584556 - AluSx SINE Alu -17 295 1 664 263 208 33 chrX 117015374 117015476 -45584454 - L3 LINE CR1 -389 1188 1105 616 262 220 0 chrX 117015494 117015708 -45584222 + MIR SINE MIR 2 262 0 415 199 159 60 chrX 117015866 117016017 -45583913 + L1MC4a LINE L1 5734 5899 -1909 2098 120 0 3 chrX 117016375 117016666 -45583264 + AluSg SINE Alu 1 290 -20 2327 104 0 3 chrX 117018192 117018499 -45581431 + AluSc SINE Alu 1 306 -3 2258 105 0 23 chrX 117018809 117019115 -45580815 - AluSx SINE Alu -13 299 1 2165 119 0 3 chrX 117019148 117019441 -45580489 + AluSx SINE Alu 1 292 -20 21 0 0 0 chrX 117020059 117020080 -45579850 + AT_rich Low_complexity Low_complexity 1 21 0 2029 139 3 10 chrX 117020405 117020707 -45579223 - AluSx SINE Alu -10 302 3 2352 81 0 7 chrX 117020803 117021098 -45578832 - AluSg SINE Alu -17 293 1 262 0 53 0 chrX 117021745 117021783 -45578147 + (CAAAAA)n Simple_repeat Simple_repeat 6 45 0 1172 227 109 83 chrX 117022835 117023376 -45576554 + MER68 LTR ERV1 1 555 -7 198 143 0 0 chrX 117023886 117023921 -45576009 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 374 97 12 chrX 117024162 117024419 -45575511 + L2 LINE L2 2566 2844 -470 635 195 133 0 chrX 117024487 117024615 -45575315 - FRAM SINE Alu -31 145 1 245 303 11 22 chrX 117024972 117025061 -45574869 + L2 LINE L2 2562 2649 -665 * 250 295 82 94 chrX 117025044 117025288 -45574642 - L2 LINE L2 0 3272 3032 1677 129 38 15 chrX 117026306 117026569 -45573361 + AluSx SINE Alu 44 312 0 726 108 16 39 chrX 117027043 117027172 -45572758 + L1M1 LINE L1 5457 5582 -723 2308 104 0 0 chrX 117027252 117027551 -45572379 - AluSx SINE Alu -13 299 1 1079 131 17 0 chrX 117027608 117027783 -45572147 + L1M1 LINE L1 5581 5758 -546 504 277 60 0 chrX 117029259 117029425 -45570505 - MER97c DNA MER1_type? -913 177 2 433 254 5 18 chrX 117029558 117029748 -45570182 - MIR SINE MIR 0 262 19 2051 60 45 4 chrX 117030624 117030889 -45569041 + AluY SINE Alu 27 302 -9 2341 103 0 3 chrX 117030893 117031203 -45568727 + AluSg SINE Alu 1 309 -1 424 23 0 92 chrX 117031203 117031290 -45568640 + (GGAAA)n Simple_repeat Simple_repeat 1 79 0 815 254 22 0 chrX 117031384 117031569 -45568361 - MER5A DNA MER1_type 0 189 1 741 181 25 64 chrX 117031859 117031942 -45567988 - MER3 DNA MER1_type -5 204 119 2071 78 74 0 chrX 117031942 117032226 -45567704 + AluSq SINE Alu 2 306 -7 741 181 25 64 chrX 117032226 117032346 -45567584 - MER3 DNA MER1_type -90 119 9 2273 198 48 4 chrX 117032362 117032919 -45567011 + L1 LINE L1 2472 3053 -3093 252 0 0 0 chrX 117033758 117033786 -45566144 + (A)n Simple_repeat Simple_repeat 1 28 0 193 310 90 40 chrX 117033789 117033889 -45566041 - L2 LINE L2 -12 3260 3156 1101 152 57 19 chrX 117034114 117034325 -45565605 + MER20 DNA MER1_type 1 219 0 435 312 213 44 chrX 117034851 117034953 -45564977 + L2 LINE L2 2638 2721 -592 207 0 0 0 chrX 117034953 117034976 -45564954 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 435 312 213 44 chrX 117034976 117035445 -45564485 + L2 LINE L2 2721 3313 0 2313 105 0 0 chrX 117035467 117035761 -45564169 + AluSx SINE Alu 1 294 -18 283 358 29 29 chrX 117035901 117036038 -45563892 + L2 LINE L2 3132 3268 -4 387 244 146 8 chrX 117036071 117036194 -45563736 + MIR3 SINE MIR 2 141 -67 2247 92 0 38 chrX 117036218 117036535 -45563395 + AluSx SINE Alu 1 305 -7 2117 132 10 3 chrX 117036863 117037166 -45562764 - AluJb SINE Alu -7 305 1 1425 253 107 15 chrX 117037205 117037845 -45562085 + L2 LINE L2 2620 3311 -2 678 268 94 18 chrX 117037838 117037870 -45562060 - MIR SINE MIR -19 243 215 * 1960 115 42 48 chrX 117037870 117038182 -45561748 - AluSx SINE Alu -2 310 1 678 268 94 18 chrX 117038182 117038373 -45561557 - MIR SINE MIR -47 215 3 572 246 16 60 chrX 117039657 117039840 -45560090 + MIR SINE MIR 23 197 -65 1049 142 6 19 chrX 117039898 117040060 -45559870 - FRAM SINE Alu -15 161 2 515 204 238 35 chrX 117040443 117040674 -45559256 - MER5C DNA MER1_type -46 278 1 1130 184 8 12 chrX 117042207 117042452 -45557478 - L1MB7 LINE L1 -1 6183 5940 672 324 117 56 chrX 117042829 117043738 -45556192 + L2 LINE L2 2268 3245 -27 1211 150 53 13 chrX 117043738 117043965 -45555965 - MER46A DNA MER2_type 0 236 1 672 324 117 56 chrX 117043965 117043995 -45555935 + L2 LINE L2 3245 3272 0 2706 77 11 3 chrX 117044506 117044858 -45555072 + THE1A LTR MaLR 1 355 0 6861 33 0 0 chrX 117045862 117046676 -45553254 + L1PA4 LINE L1 5342 6155 0 449 272 71 35 chrX 117047602 117047771 -45552159 - MIR3 SINE MIR -6 202 28 334 287 40 0 chrX 117048926 117049027 -45550903 + L3b LINE CR1 1226 1330 -253 388 284 99 0 chrX 117050876 117051038 -45548892 - L1ME4a LINE L1 -4 6117 5940 488 291 63 4 chrX 117051040 117051294 -45548636 - L1ME4a LINE L1 -204 5917 5649 496 263 103 104 chrX 117051321 117051699 -45548231 + L2 LINE L2 2698 3066 -247 2043 133 46 25 chrX 117051711 117052078 -45547852 + THE1C LTR MaLR 1 375 0 268 255 113 14 chrX 117052341 117052482 -45547448 - L1ME4a LINE L1 -658 5463 5309 956 161 65 138 chrX 117052704 117053101 -45546829 + MLT1C LTR MaLR 21 465 -2 21 0 0 0 chrX 117053592 117053613 -45546317 + AT_rich Low_complexity Low_complexity 1 21 0 1923 223 54 43 chrX 117053644 117054254 -45545676 + L1ME2 LINE L1 5539 6155 -9 2034 154 30 0 chrX 117054306 117054638 -45545292 - MER2 DNA MER2_type -1 343 2 6208 59 2 1 chrX 117054881 117055694 -45544236 - L1PA7 LINE L1 -15 6139 5326 526 235 137 81 chrX 117055932 117056166 -45543764 + MIR SINE MIR 1 247 -15 2192 103 7 0 chrX 117056167 117056458 -45543472 - AluSg SINE Alu -17 293 1 2548 57 0 10 chrX 117056472 117056786 -45543144 - AluY SINE Alu 0 311 1 2454 73 0 0 chrX 117057691 117057991 -45541939 + AluSq SINE Alu 1 300 -13 283 302 94 42 chrX 117058908 117059004 -45540926 + MIR3 SINE MIR 69 169 -39 195 167 148 37 chrX 117059306 117059360 -45540570 + L3 LINE CR1 1516 1575 -2 186 295 33 0 chrX 117060626 117060687 -45539243 - MIR SINE MIR -127 135 73 415 286 149 13 chrX 117060793 117060947 -45538983 + MIR SINE MIR 38 212 -50 428 302 135 34 chrX 117061097 117061322 -45538608 - MIR SINE MIR -18 244 11 632 103 0 0 chrX 117061379 117061466 -45538464 + AluJ/FLAM SINE Alu 2 88 -224 312 266 29 65 chrX 117061660 117061799 -45538131 - MIR SINE MIR -22 240 107 501 301 112 5 chrX 117062191 117062387 -45537543 + MIR SINE MIR 40 256 -6 410 287 7 7 chrX 117062792 117062935 -45536995 + L1ME4a LINE L1 5610 5752 -369 345 246 138 26 chrX 117063005 117063237 -45536693 + L1ME4a LINE L1 5864 6121 0 2268 81 0 17 chrX 117063728 117064024 -45535906 - AluSx SINE Alu -21 291 1 687 67 0 0 chrX 117065696 117065785 -45534145 - L1PA15 LINE L1 -13 6152 6064 958 249 37 35 chrX 117066211 117066640 -45533290 + L2 LINE L2 2771 3232 -81 1650 150 8 4 chrX 117066701 117066955 -45532975 + AluJo SINE Alu 44 298 -14 24 0 0 0 chrX 117068629 117068653 -45531277 + AT_rich Low_complexity Low_complexity 1 24 0 707 96 19 0 chrX 117068792 117068896 -45531034 + HY1 scRNA scRNA 1 106 -6 304 115 0 33 chrX 117068901 117068916 -45531014 + (GAAA)n Simple_repeat Simple_repeat 2 16 -44 2404 85 20 0 chrX 117068916 117069221 -45530709 + AluSp SINE Alu 1 311 -2 304 115 0 33 chrX 117069221 117069266 -45530664 + (GAAA)n Simple_repeat Simple_repeat 16 60 0 495 0 0 0 chrX 117069882 117069937 -45529993 + (TA)n Simple_repeat Simple_repeat 2 56 0 2251 120 0 0 chrX 117070575 117070875 -45529055 + AluSx SINE Alu 1 300 -12 1351 138 0 4 chrX 117072830 117073062 -45526868 + L1MA4 LINE L1 6070 6300 0 1704 167 0 29 chrX 117073071 117073383 -45526547 + AluJb SINE Alu 5 307 -5 525 210 115 51 chrX 117073385 117073641 -45526289 + AluJo/FRAM SINE Alu 138 403 0 833 130 0 0 chrX 117074085 117074200 -45525730 + AluSx SINE Alu 3 117 -196 1072 136 45 6 chrX 117074239 117074416 -45525514 + MER61B LTR ERV1 240 423 -2 1352 111 42 0 chrX 117074416 117074605 -45525325 + AluSx SINE Alu 109 305 -5 185 163 20 0 chrX 117074709 117074758 -45525172 + (TA)n Simple_repeat Simple_repeat 1 50 0 899 188 0 23 chrX 117074831 117075007 -45524923 - FAM SINE Alu 0 175 4 237 241 11 69 chrX 117075012 117075099 -45524831 - MIR SINE MIR -63 199 118 246 308 66 11 chrX 117075285 117075376 -45524554 - L2 LINE L2 -4 3309 3214 319 388 127 27 chrX 117075657 117076106 -45523824 - L2 LINE L2 -424 2890 2397 2110 137 0 0 chrX 117076119 117076419 -45523511 - AluSx SINE Alu -7 305 6 1986 132 17 7 chrX 117076425 117076721 -45523209 - AluJo SINE Alu -13 299 1 647 139 124 16 chrX 117078561 117078690 -45521240 - FLAM_C SINE Alu 0 143 1 22 35 0 0 chrX 117078891 117078920 -45521010 + AT_rich Low_complexity Low_complexity 1 29 0 376 275 81 34 chrX 117079292 117079441 -45520489 + MIR3 SINE MIR 18 173 -35 293 277 58 52 chrX 117079940 117080035 -45519895 - MIR SINE MIR -76 186 88 2186 108 7 0 chrX 117080035 117080331 -45519599 + AluSx SINE Alu 1 298 -14 293 277 58 52 chrX 117080331 117080390 -45519540 - MIR SINE MIR -174 88 31 861 295 125 37 chrX 117080397 117080517 -45519413 + L2 LINE L2 2731 2839 -474 2505 59 13 0 chrX 117080517 117080821 -45519109 - AluY SINE Alu -3 308 1 861 295 125 37 chrX 117080821 117081234 -45518696 + L2 LINE L2 2839 3311 -2 2231 109 0 26 chrX 117081530 117081841 -45518089 - AluSx SINE Alu -9 303 1 2288 117 0 0 chrX 117081963 117082272 -45517658 + AluSx SINE Alu 1 309 -3 2082 142 0 6 chrX 117082724 117083035 -45516895 - AluSx SINE Alu -3 309 1 408 288 33 13 chrX 117083337 117083490 -45516440 - MIR SINE MIR 0 262 107 2262 121 0 0 chrX 117083734 117084040 -45515890 - AluSx SINE Alu -6 306 1 1005 160 0 0 chrX 117084139 117084295 -45515635 + FRAM SINE Alu 1 154 -22 197 256 0 0 chrX 117084341 117084384 -45515546 + L2 LINE L2 3261 3303 -10 1021 126 6 82 chrX 117085392 117085575 -45514355 - FRAM SINE Alu -6 170 2 1487 155 0 13 chrX 117086255 117086487 -45513443 - AluJb SINE Alu -15 297 69 1756 185 3 7 chrX 117086598 117086890 -45513040 - AluJo SINE Alu -20 292 2 1795 181 0 0 chrX 117087858 117088151 -45511779 - AluJb SINE Alu -19 293 1 1742 173 36 0 chrX 117088441 117088563 -45511367 + AluJb SINE Alu 1 117 -195 207 0 0 0 chrX 117088563 117088586 -45511344 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1742 173 36 0 chrX 117088586 117088764 -45511166 + AluJb SINE Alu 117 312 0 2135 112 3 3 chrX 117088864 117089159 -45510771 + AluSx SINE Alu 1 295 -17 216 0 0 0 chrX 117089177 117089201 -45510729 + (CA)n Simple_repeat Simple_repeat 1 24 0 370 293 21 14 chrX 117089263 117089403 -45510527 + MER102b DNA MER1_type 199 339 -2 2279 184 34 69 chrX 117089451 117089974 -45509956 - MLT1D LTR MaLR 0 505 1 951 154 7 0 chrX 117090256 117090405 -45509525 - FRAM SINE Alu -26 150 1 964 268 16 20 chrX 117090580 117090826 -45509104 + MIR SINE MIR 6 250 -12 1800 168 0 3 chrX 117091309 117091601 -45508329 - AluSx SINE Alu -21 291 1 189 0 0 0 chrX 117092076 117092097 -45507833 + (T)n Simple_repeat Simple_repeat 1 21 0 188 205 103 0 chrX 117092452 117092491 -45507439 + L2 LINE L2 3223 3265 -7 236 225 28 0 chrX 117093016 117093087 -45506843 + A-rich Low_complexity Low_complexity 5 77 0 2375 81 0 31 chrX 117093337 117093660 -45506270 + AluSq SINE Alu 1 313 0 503 268 0 16 chrX 117093904 117094031 -45505899 - MIR SINE MIR -125 137 13 2302 89 0 0 chrX 117094346 117094639 -45505291 - AluY SINE Alu -18 293 1 452 59 15 0 chrX 117095743 117095811 -45504119 + (CA)n Simple_repeat Simple_repeat 2 70 0 1940 139 17 10 chrX 117095837 117096132 -45503798 + AluJb SINE Alu 1 297 -15 740 258 99 9 chrX 117096560 117096781 -45503149 - MIR SINE MIR -2 260 20 383 250 221 0 chrX 117097128 117097300 -45502630 + L2 LINE L2 3099 3308 -5 21 57 0 0 chrX 117097445 117097480 -45502450 + AT_rich Low_complexity Low_complexity 1 35 0 2559 83 0 0 chrX 117098226 117098539 -45501391 - AluSq SINE Alu 0 313 1 1918 170 40 28 chrX 117098612 117099007 -45500923 - L1MA7 LINE L1 -34 6257 5858 227 170 0 21 chrX 117099660 117099707 -45500223 - U5 snRNA snRNA -70 46 1 298 297 156 9 chrX 117099970 117100097 -45499833 - MIR SINE MIR -66 142 19 455 204 129 0 chrX 117100100 117100247 -45499683 + MER113 DNA MER1_type? 5 170 -351 481 270 26 0 chrX 117101487 117101602 -45498328 - L2 LINE L2 -18 3254 3137 1881 143 35 3 chrX 117101996 117102282 -45497648 - AluJb SINE Alu -17 295 1 631 238 160 19 chrX 117102877 117103083 -45496847 - MIR SINE MIR -17 245 11 2186 108 0 0 chrX 117105016 117105304 -45494626 + AluSq SINE Alu 1 288 -25 243 88 0 0 chrX 117105312 117105346 -45494584 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2623 40 0 3 chrX 117105506 117105809 -45494121 - AluY SINE Alu -9 302 1 466 182 56 84 chrX 117106370 117106449 -45493481 + L1MB8 LINE L1 6040 6120 -58 2212 93 3 3 chrX 117106449 117106739 -45493191 + AluSq SINE Alu 1 290 -23 189 0 0 0 chrX 117106741 117106762 -45493168 + (TA)n Simple_repeat Simple_repeat 1 21 0 466 182 56 84 chrX 117106762 117106822 -45493108 + L1MB8 LINE L1 6121 6178 0 351 0 0 0 chrX 117106856 117106895 -45493035 + (T)n Simple_repeat Simple_repeat 1 39 0 1340 159 13 13 chrX 117106901 117107134 -45492796 - AluJo SINE Alu -79 233 1 191 36 36 0 chrX 117107165 117107193 -45492737 + (CAA)n Simple_repeat Simple_repeat 2 30 0 303 298 63 86 chrX 117107410 117107916 -45492014 - L2 LINE L2 -19 3253 2701 306 303 34 69 chrX 117108246 117108421 -45491509 + L2 LINE L2 2686 2854 -460 2310 94 10 10 chrX 117109026 117109333 -45490597 + AluSg SINE Alu 1 307 -3 234 246 29 14 chrX 117110466 117110535 -45489395 + Charlie4 DNA MER1_type 1882 1951 -10 468 207 73 33 chrX 117110598 117110748 -45489182 - L1ME4a LINE L1 -2 6119 5964 4305 147 56 72 chrX 117112575 117113149 -45486781 - L1MB4 LINE L1 -4 6176 5627 2213 99 14 3 chrX 117113149 117113442 -45486488 - AluSx SINE Alu -16 296 1 4305 147 56 72 chrX 117113442 117113890 -45486040 - L1MB4 LINE L1 -553 5627 5173 753 263 40 26 chrX 117115190 117115373 -45484557 - MIR SINE MIR -8 254 66 2002 210 194 34 chrX 117115373 117115936 -45483994 + MLT1E1 LTR MaLR 2 654 0 753 263 40 26 chrX 117115936 117115980 -45483950 - MIR SINE MIR -196 66 24 1883 129 7 4 chrX 117115980 117116258 -45483672 - AluSx SINE Alu -20 292 14 557 274 74 32 chrX 117116956 117117146 -45482784 - MIR SINE MIR -60 202 5 2041 108 38 7 chrX 117118754 117119042 -45480888 - AluSx SINE Alu -15 297 1 2218 136 8 20 chrX 117119348 117119700 -45480230 - L1MC1 LINE L1 0 6333 5986 699 169 0 25 chrX 117119755 117119873 -45480057 - FLAM_A SINE Alu -18 124 10 1907 151 16 7 chrX 117120896 117121200 -45478730 - AluJo SINE Alu -1 311 5 712 225 12 6 chrX 117121306 117121466 -45478464 - MIR SINE MIR -2 260 100 1874 117 30 4 chrX 117121573 117121838 -45478092 + AluSx SINE Alu 1 272 -40 273 57 0 0 chrX 117121874 117121909 -45478021 + (GGGGA)n Simple_repeat Simple_repeat 3 37 0 2461 67 3 13 chrX 117121913 117122225 -45477705 + AluY SINE Alu 1 309 -2 259 235 0 92 chrX 117122253 117122372 -45477558 - L1MC1 LINE L1 -303 5818 5711 260 309 0 21 chrX 117122397 117122494 -45477436 - MIR SINE MIR -108 154 60 975 221 111 65 chrX 117122670 117122775 -45477155 + MLT1D LTR MaLR 7 106 -361 2446 88 3 0 chrX 117122775 117123082 -45476848 + AluSp SINE Alu 1 308 -5 975 221 111 65 chrX 117123082 117123431 -45476499 + MLT1D LTR MaLR 106 467 0 380 268 52 70 chrX 117123488 117123701 -45476229 - L2 LINE L2 -234 3038 2830 2078 132 29 42 chrX 117123970 117124350 -45475580 - THE1C LTR MaLR 0 375 1 1032 157 18 24 chrX 117124681 117124847 -45475083 - FRAM SINE Alu -19 157 1 214 184 0 41 chrX 117125112 117125161 -45474769 + GA-rich Low_complexity Low_complexity 3 49 0 1948 112 45 0 chrX 117126107 117126394 -45473536 + AluSx SINE Alu 1 300 -12 201 129 0 0 chrX 117127691 117127722 -45472208 + (CA)n Simple_repeat Simple_repeat 1 31 0 2540 170 45 55 chrX 117128134 117128641 -45471289 + MLT1D LTR MaLR 2 503 -2 2027 125 30 3 chrX 117128744 117129040 -45470890 + AluSx SINE Alu 1 304 -8 215 266 86 86 chrX 117130416 117130544 -45469386 + MIR3 SINE MIR 36 163 -45 2014 89 64 0 chrX 117130658 117130939 -45468991 + AluSx SINE Alu 1 299 -13 794 159 8 8 chrX 117131373 117131505 -45468425 - FLAM_C SINE Alu -10 133 2 2210 93 7 0 chrX 117131634 117131924 -45468006 - AluSx SINE Alu -20 292 1 1758 163 3 10 chrX 117132023 117132336 -45467594 - AluJo SINE Alu 0 312 2 2049 118 0 10 chrX 117132981 117133285 -45466645 + AluSx SINE Alu 1 301 -11 415 218 324 0 chrX 117133285 117133427 -45466503 - MIR SINE MIR -67 195 8 202 265 20 0 chrX 117134801 117134850 -45465080 + C-rich Low_complexity Low_complexity 1 50 0 1992 95 49 3 chrX 117134948 117135233 -45464697 + AluSq SINE Alu 2 299 -14 212 269 125 29 chrX 117135344 117135448 -45464482 - L2 LINE L2 -9 3263 3150 264 30 0 0 chrX 117135509 117135542 -45464388 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 428 215 123 31 chrX 117135596 117135726 -45464204 - MIR SINE MIR -55 207 66 928 276 146 32 chrX 117135726 117136164 -45463766 + L3 LINE CR1 1048 1535 -42 437 172 23 11 chrX 117136173 117136260 -45463670 + MER5B DNA MER1_type 21 108 -70 746 252 38 72 chrX 117136281 117136637 -45463293 + L1ME4a LINE L1 5320 5656 -465 650 101 13 132 chrX 117136689 117136815 -45463115 + MER3 DNA MER1_type 29 134 -28 2010 106 0 17 chrX 117136815 117137107 -45462823 - AluSx SINE Alu -23 289 3 650 101 13 132 chrX 117137107 117137139 -45462791 + MER3 DNA MER1_type 134 168 -41 330 256 48 12 chrX 117137178 117137346 -45462584 + L1ME4a LINE L1 5711 5884 -237 1700 168 30 3 chrX 117137365 117137489 -45462441 + AluJb SINE Alu 1 120 -192 181 0 33 33 chrX 117137489 117137519 -45462411 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1700 168 30 3 chrX 117137519 117137698 -45462232 + AluJb SINE Alu 120 312 0 204 290 0 0 chrX 117137698 117137760 -45462170 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 246 230 184 33 chrX 117137761 117137913 -45462017 + L1ME4a LINE L1 5891 6065 -56 2467 37 0 0 chrX 117137960 117138255 -45461675 + AluY SINE Alu 1 295 -16 23 0 0 0 chrX 117139530 117139553 -45460377 + AT_rich Low_complexity Low_complexity 1 23 0 271 245 0 0 chrX 117140057 117140110 -45459820 + L2 LINE L2 3251 3303 -10 207 71 54 71 chrX 117141165 117141221 -45458709 + A-rich Low_complexity Low_complexity 4 58 0 27 0 0 0 chrX 117142397 117142424 -45457506 + GC_rich Low_complexity Low_complexity 1 27 0 274 235 15 0 chrX 117142496 117142564 -45457366 + CT-rich Low_complexity Low_complexity 2 70 0 1085 260 144 25 chrX 117144078 117144628 -45455302 + MLT1L LTR MaLR 1 615 0 982 311 111 7 chrX 117144628 117145064 -45454866 - L2 LINE L2 -45 3268 2784 2189 105 7 0 chrX 117145336 117145641 -45454289 + AluSq SINE Alu 1 307 -6 419 281 6 29 chrX 117145915 117146086 -45453844 + L1MC4a LINE L1 5594 5760 -361 289 246 0 0 chrX 117146086 117146151 -45453779 + L2 LINE L2 3237 3301 -12 282 263 44 29 chrX 117146155 117146292 -45453638 + L1MC4a LINE L1 5759 5897 -1911 199 111 22 22 chrX 117146308 117146320 -45453610 + (TG)n Simple_repeat Simple_repeat 2 13 -33 1879 108 0 89 chrX 117146320 117146644 -45453286 + AluSx SINE Alu 1 295 -17 199 111 22 22 chrX 117146644 117146676 -45453254 + (TG)n Simple_repeat Simple_repeat 12 46 0 1555 238 125 11 chrX 117146737 117147170 -45452760 + L2 LINE L2 2202 2683 -631 1510 227 51 140 chrX 117147229 117147637 -45452293 - MLT1E LTR MaLR -7 586 254 2045 142 7 0 chrX 117147637 117147947 -45451983 + AluSx SINE Alu 1 312 0 1510 227 51 140 chrX 117147947 117148181 -45451749 - MLT1E LTR MaLR -339 254 1 973 266 117 17 chrX 117148218 117148620 -45451310 + L2 LINE L2 2817 3258 -55 650 112 9 17 chrX 117148623 117148739 -45451191 - Charlie5 DNA MER1_type -27 2585 2471 2222 88 0 3 chrX 117148743 117149040 -45450890 + AluSq SINE Alu 5 300 -13 940 128 0 0 chrX 117149050 117149183 -45450747 + AluSq/x SINE Alu 1 133 -179 2059 107 0 0 chrX 117149187 117149491 -45450439 + AluSg SINE Alu 1 304 0 1149 153 5 42 chrX 117149491 117149706 -45450224 + AluJo SINE Alu 84 290 -22 698 206 7 1 chrX 117149713 117149872 -45450058 - MER3 DNA MER1_type -86 123 33 302 231 27 57 chrX 117150070 117150214 -45449716 - MIR SINE MIR -50 212 35 28 61 0 0 chrX 117150415 117150464 -45449466 + AT_rich Low_complexity Low_complexity 1 49 0 58 32 0 21 chrX 117150549 117150618 -45449312 + AT_rich Low_complexity Low_complexity 1 69 -23 2313 72 0 28 chrX 117150618 117150937 -45448993 + AluY SINE Alu 1 310 -1 58 32 0 21 chrX 117150937 117150961 -45448969 + AT_rich Low_complexity Low_complexity 69 92 0 1928 118 11 0 chrX 117150972 117151276 -45448654 + AluSq SINE Alu 3 309 0 3355 132 28 0 chrX 117152882 117153428 -45446502 + L1PB4 LINE L1 5590 6150 -6 204 250 0 0 chrX 117153435 117153483 -45446447 + A-rich Low_complexity Low_complexity 1 48 0 2163 105 3 0 chrX 117154016 117154322 -45445608 + AluSx SINE Alu 1 307 -5 668 220 23 8 chrX 117154501 117154633 -45445297 - AluJo SINE Alu -93 219 86 2333 88 0 3 chrX 117154945 117155252 -45444678 + AluSc SINE Alu 4 309 0 2020 139 0 0 chrX 117155362 117155665 -45444265 + AluSx SINE Alu 3 305 -7 1923 147 3 0 chrX 117155672 117155965 -45443965 + AluJo SINE Alu 1 294 -18 389 241 0 0 chrX 117155968 117156055 -45443875 + L1MC5 LINE L1 7701 7787 -174 * 1769 203 32 42 chrX 117156051 117156215 -45443715 + L1MB5 LINE L1 4865 5029 -1117 1906 134 0 3 chrX 117156215 117156533 -45443397 + AluSx SINE Alu 1 317 0 1769 203 32 42 chrX 117156533 117156839 -45443091 + L1MB5 LINE L1 5029 5331 -815 833 204 0 0 chrX 117156839 117156976 -45442954 + AluJb SINE Alu 167 303 -9 2163 90 0 0 chrX 117156976 117157288 -45442642 + AluSc SINE Alu 1 312 0 4552 184 18 20 chrX 117157290 117157365 -45442565 + L1MB5 LINE L1 5322 5396 -778 2181 97 16 10 chrX 117157365 117157675 -45442255 + AluSx SINE Alu 1 312 0 4552 184 18 20 chrX 117157675 117157766 -45442164 + L1MB5 LINE L1 5396 5486 -688 336 111 0 0 chrX 117157766 117157829 -45442101 + (CA)n Simple_repeat Simple_repeat 2 64 0 4552 184 18 20 chrX 117157829 117158516 -45441414 + L1MB5 LINE L1 5486 6174 0 1212 158 4 35 chrX 117158522 117158750 -45441180 + AluJo SINE Alu 84 304 -8 1138 135 0 68 chrX 117158763 117158985 -45440945 + AluJo SINE Alu 12 218 -94 322 165 55 88 chrX 117159207 117159298 -45440632 + MER91C DNA MER1_type 18 105 -35 2256 88 0 3 chrX 117159310 117159607 -45440323 + AluSq SINE Alu 1 296 -17 1093 134 0 0 chrX 117159708 117159870 -45440060 + FRAM SINE Alu 1 164 -148 2425 41 3 0 chrX 117159870 117160162 -45439768 - AluY SINE Alu -18 293 1 276 170 0 0 chrX 117160481 117160534 -45439396 + (TA)n Simple_repeat Simple_repeat 1 53 0 245 209 15 0 chrX 117160580 117160647 -45439283 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 374 211 22 11 chrX 117160666 117160756 -45439174 + L2 LINE L2 2131 2221 -1093 1797 149 16 6 chrX 117160757 117161073 -45438857 - MER33 DNA MER1_type 0 324 6 613 220 23 0 chrX 117161078 117161210 -45438720 + L2 LINE L2 2215 2349 -965 1836 122 7 11 chrX 117161211 117161497 -45438433 + AluSx SINE Alu 1 285 -27 237 146 48 10 chrX 117161497 117161584 -45438346 + (TA)n Simple_repeat Simple_repeat 1 94 -13 279 0 0 0 chrX 117161584 117161615 -45438315 + (CA)n Simple_repeat Simple_repeat 2 32 0 237 146 48 10 chrX 117161615 117161630 -45438300 + (TA)n Simple_repeat Simple_repeat 94 107 0 216 0 0 0 chrX 117161630 117161654 -45438276 + (GA)n Simple_repeat Simple_repeat 2 25 0 2403 209 63 26 chrX 117161655 117162436 -45437494 + L2 LINE L2 2343 3162 -151 2213 90 3 0 chrX 117162436 117162737 -45437193 - AluSp SINE Alu -11 302 1 2403 209 63 26 chrX 117162737 117162888 -45437042 + L2 LINE L2 3162 3306 -7 1422 107 0 36 chrX 117163015 117163240 -45436690 - AluSq SINE Alu -96 217 1 735 127 0 0 chrX 117163257 117163367 -45436563 - FLAM_C SINE Alu -32 111 2 1629 169 10 10 chrX 117164081 117164371 -45435559 - AluJb SINE Alu -22 290 1 265 293 0 0 chrX 117164374 117164442 -45435488 + (CATG)n Simple_repeat Simple_repeat 1 68 0 1448 172 0 80 chrX 117164668 117164993 -45434937 + AluJo SINE Alu 1 299 -13 1133 136 81 0 chrX 117165113 117165311 -45434619 - AluSx SINE Alu -98 214 1 324 325 119 12 chrX 117165412 117165664 -45434266 + L2 LINE L2 2245 2523 -791 1966 143 0 0 chrX 117165942 117166235 -45433695 + AluJo SINE Alu 1 293 -19 335 133 183 0 chrX 117166453 117166513 -45433417 - AluJ/FRAM SINE Alu -20 282 230 2383 141 123 169 chrX 117166518 117167382 -45432548 - pTR5 LTR ERV1 -220 2218 1395 1363 169 223 22 chrX 117167387 117167754 -45432176 - pTR5 LTR ERV1 -607 1831 1391 253 224 0 0 chrX 117167754 117167803 -45432127 - LTR30 LTR ERV1 -673 49 1 587 192 0 0 chrX 117167808 117167907 -45432023 - FRAM SINE Alu -77 99 1 2129 119 0 3 chrX 117168207 117168517 -45431413 + AluSg SINE Alu 1 309 -1 1029 201 5 31 chrX 117168630 117168854 -45431076 + AluJo SINE Alu 1 218 -94 396 103 0 0 chrX 117168873 117168931 -45430999 + (CA)n Simple_repeat Simple_repeat 1 58 0 329 296 37 7 chrX 117169097 117169232 -45430698 + L1ME4a LINE L1 5333 5471 -650 1703 143 50 0 chrX 117169234 117169514 -45430416 - AluSx SINE Alu -18 294 1 955 145 39 0 chrX 117169662 117169841 -45430089 + MER53 DNA DNA 1 186 -3 1782 97 4 4 chrX 117170147 117170394 -45429536 - AluSx SINE Alu -45 267 21 568 248 72 7 chrX 117170418 117170571 -45429359 + LTR67 LTR ERVL 387 549 -8 1496 158 0 30 chrX 117170628 117170893 -45429037 + AluJo SINE Alu 35 291 -21 452 237 143 104 chrX 117170948 117170992 -45428938 + L1ME4a LINE L1 5671 5712 -409 2110 123 0 0 chrX 117170992 117171284 -45428646 - AluSx SINE Alu -20 292 1 2058 113 0 0 chrX 117171290 117171600 -45428330 - AluSx SINE Alu 0 310 1 452 237 143 104 chrX 117171600 117171804 -45428126 + L1ME4a LINE L1 5716 5911 -210 1796 159 0 0 chrX 117171804 117172100 -45427830 + AluJb SINE Alu 1 296 -16 452 237 143 104 chrX 117172100 117172276 -45427654 + L1ME4a LINE L1 5911 6121 0 1996 130 0 0 chrX 117172751 117173064 -45426866 - AluSx SINE Alu 0 315 3 560 110 0 0 chrX 117173769 117173842 -45426088 - AluSg/x SINE Alu -55 257 185 562 239 14 36 chrX 117173934 117174072 -45425858 - L2 LINE L2 0 3272 3138 638 241 62 83 chrX 117174225 117174515 -45425415 + MLT1H LTR MaLR 49 332 -217 1788 135 30 13 chrX 117174515 117174818 -45425112 + AluJb SINE Alu 1 308 -4 2101 77 0 3 chrX 117174821 117175138 -45424792 + AluSx SINE Alu 1 316 0 270 231 201 30 chrX 117175139 117175273 -45424657 - L1MC4 LINE L1 -46 7996 7840 541 146 0 0 chrX 117175273 117175355 -45424575 - AluJb SINE Alu -45 267 186 628 186 95 33 chrX 117175356 117175588 -45424342 - L1MC4 LINE L1 -208 7834 7585 1765 169 17 0 chrX 117175588 117175884 -45424046 - AluJb SINE Alu -11 301 1 687 201 0 36 chrX 117175914 117176053 -45423877 - AluJo SINE Alu -176 136 3 2612 214 61 35 chrX 117176058 117176095 -45423835 - L1MC4 LINE L1 -456 7586 7551 2053 123 26 0 chrX 117176095 117176397 -45423533 + AluSx SINE Alu 1 310 -2 2612 214 61 35 chrX 117176397 117176663 -45423267 - L1MC4 LINE L1 -491 7551 7294 2325 74 0 3 chrX 117176663 117176962 -45422968 - AluSq SINE Alu -15 298 1 2612 214 61 35 chrX 117176962 117177411 -45422519 - L1MC4 LINE L1 -748 7294 6813 1214 158 87 118 chrX 117177751 117177900 -45422030 + MER2 DNA MER2_type 1 153 -191 2021 127 0 0 chrX 117177900 117178175 -45421755 - AluSx SINE Alu -37 275 1 1214 158 87 118 chrX 117178175 117178380 -45421550 + MER2 DNA MER2_type 153 344 0 499 218 57 8 chrX 117178711 117178835 -45421095 - MIR3 SINE MIR -20 188 59 256 94 38 0 chrX 117178948 117179001 -45420929 + (TA)n Simple_repeat Simple_repeat 2 56 0 2143 126 3 46 chrX 117179247 117179597 -45420333 - MER1B DNA MER1_type 0 337 3 425 237 0 10 chrX 117179960 117180057 -45419873 + L2 LINE L2 2563 2658 -656 2396 87 0 10 chrX 117180129 117180441 -45419489 + AluSx SINE Alu 1 309 -3 1380 179 57 103 chrX 117180547 117181086 -45418844 - Charlie2 DNA MER1_type -63 2799 2300 2289 116 0 0 chrX 117181086 117181389 -45418541 - AluSx SINE Alu -9 303 1 1380 179 57 103 chrX 117181389 117181564 -45418366 - Charlie2 DNA MER1_type -562 2300 2118 220 222 0 0 chrX 117183765 117183801 -45416129 - L2 LINE L2 -27 3245 3210 351 0 0 0 chrX 117183815 117183854 -45416076 + (TA)n Simple_repeat Simple_repeat 2 40 0 776 189 85 7 chrX 117183854 117184007 -45415923 - AluJo SINE Alu -28 284 120 927 141 7 0 chrX 117184107 117184242 -45415688 - AluJo SINE Alu -176 136 1 235 253 127 13 chrX 117184244 117184323 -45415607 - MIR SINE MIR -58 204 117 1503 177 26 43 chrX 117184673 117184954 -45414976 + AluJo SINE Alu 1 278 -34 216 0 0 0 chrX 117184954 117184978 -45414952 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 1503 177 26 43 chrX 117184978 117185001 -45414929 + AluJo SINE Alu 278 300 -12 446 200 50 58 chrX 117185424 117185544 -45414386 - FLAM_A SINE Alu -12 121 3 1485 161 34 4 chrX 117185557 117185793 -45414137 - AluSx SINE Alu -26 286 44 * 2393 85 0 7 chrX 117185792 117186098 -45413832 - AluSc SINE Alu -5 304 1 570 277 7 20 chrX 117186315 117186463 -45413467 - L2 LINE L2 0 3313 3168 2445 80 0 0 chrX 117186533 117186832 -45413098 - AluY SINE Alu -12 299 1 2037 131 0 17 chrX 117186956 117187253 -45412677 + AluJb SINE Alu 11 302 -10 2195 120 0 7 chrX 117187775 117188083 -45411847 - AluY SINE Alu -5 306 1 226 322 17 0 chrX 117188931 117188990 -45410940 + MIR SINE MIR 87 146 -62 931 205 0 0 chrX 117189642 117189793 -45410137 + FRAM SINE Alu 6 156 -20 2132 125 0 3 chrX 117189805 117190093 -45409837 + AluSx SINE Alu 5 291 -21 250 280 0 192 chrX 117190104 117190229 -45409701 - MIR SINE MIR -21 187 86 2460 81 3 7 chrX 117190584 117190893 -45409037 + AluSc SINE Alu 1 308 -1 337 202 264 8 chrX 117191082 117191211 -45408719 + MER103 DNA DNA 2 163 -3 937 188 77 39 chrX 117191423 117191631 -45408299 + MER20 DNA MER1_type 1 216 -3 1943 179 0 3 chrX 117191692 117192005 -45407925 - AluJb SINE Alu 0 312 1 2266 107 0 0 chrX 117192258 117192549 -45407381 - AluSx SINE Alu -21 291 1 2047 111 56 3 chrX 117192757 117193045 -45406885 + AluSx SINE Alu 1 303 -9 1750 159 0 40 chrX 117193102 117193398 -45406532 + AluJb SINE Alu 5 288 -24 207 0 0 0 chrX 117193408 117193431 -45406499 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 432 143 0 0 chrX 117193533 117193603 -45406327 - AluJ/FLAM SINE Alu -232 80 11 2128 107 34 3 chrX 117193621 117193919 -45406011 - AluSc SINE Alu -2 307 1 624 189 72 117 chrX 117195156 117195463 -45404467 + HsTC2 DNA Tc2 1 293 -1605 594 283 134 7 chrX 117195462 117195752 -45404178 + HsTC2 DNA Tc2 495 821 -1077 * 228 218 257 50 chrX 117195760 117195861 -45404069 - MIR SINE MIR -11 251 130 2303 107 0 16 chrX 117196090 117196407 -45403523 + AluSx SINE Alu 1 312 0 446 186 23 113 chrX 117196612 117196789 -45403141 - MER5C DNA MER1_type -109 215 55 283 353 92 16 chrX 117197062 117197246 -45402684 + MIR SINE MIR 16 213 -49 180 111 0 0 chrX 117197287 117197314 -45402616 + (ATG)n Simple_repeat Simple_repeat 2 28 0 223 250 132 0 chrX 117197319 117197387 -45402543 - MIR SINE MIR -8 254 178 866 216 92 35 chrX 117197396 117197623 -45402307 - MIR SINE MIR -8 254 15 226 339 108 8 chrX 117197739 117197869 -45402061 - L2 LINE L2 -1231 2083 1941 1455 126 11 70 chrX 117197906 117198176 -45401754 + MLT2C1 LTR ERVL 1 254 -143 239 349 29 47 chrX 117198389 117198561 -45401369 + L2 LINE L2 235 403 -2911 937 247 154 41 chrX 117198614 117199056 -45400874 + MLT1L LTR MaLR 122 613 -2 260 268 51 157 chrX 117199083 117199191 -45400739 - MIR SINE MIR -30 232 161 243 0 0 0 chrX 117199191 117199218 -45400712 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 260 268 51 157 chrX 117199218 117199344 -45400586 - MIR SINE MIR -101 161 23 337 383 72 35 chrX 117199393 117199510 -45400420 - L2 LINE L2 -397 2917 2806 2195 123 3 0 chrX 117199510 117199820 -45400110 + AluSp SINE Alu 1 311 -2 337 383 72 35 chrX 117199820 117200047 -45399883 - L2 LINE L2 -508 2806 2560 2120 112 0 4 chrX 117200275 117200553 -45399377 - AluSq SINE Alu -34 279 3 2241 99 7 0 chrX 117200559 117200851 -45399079 - AluSg SINE Alu -16 294 1 226 169 72 12 chrX 117200855 117200938 -45398992 - L1ME4a LINE L1 -4 6117 6030 323 212 197 7 chrX 117201029 117201166 -45398764 - L1ME4a LINE L1 -251 5870 5708 507 79 0 13 chrX 117201170 117201246 -45398684 + Alu SINE Alu 1 75 -243 2326 114 0 0 chrX 117201417 117201724 -45398206 - AluSx SINE Alu -5 307 1 4514 68 17 2 chrX 117201829 117202428 -45397502 - L1PA10 LINE L1 -18 6150 5543 340 202 137 48 chrX 117202466 117202590 -45397340 - L1ME4a LINE L1 -38 6083 5949 771 156 16 0 chrX 117202591 117202713 -45397217 + FLAM_C SINE Alu 1 124 -19 2051 127 3 14 chrX 117202737 117203028 -45396902 - AluSx SINE Alu -24 288 1 26 0 0 0 chrX 117203030 117203056 -45396874 + AT_rich Low_complexity Low_complexity 1 26 0 2328 62 38 3 chrX 117203056 117203347 -45396583 + AluY SINE Alu 1 301 -10 217 184 0 0 chrX 117203349 117203387 -45396543 - L2 LINE L2 -94 3219 3182 2561 44 0 0 chrX 117203462 117203760 -45396170 + AluY SINE Alu 2 299 -12 750 227 0 0 chrX 117203760 117203901 -45396029 + AluJo/FRAM SINE Alu 137 277 -35 512 255 84 8 chrX 117203910 117204173 -45395757 - L1ME4a LINE L1 -162 5959 5677 1887 163 0 13 chrX 117204304 117204611 -45395319 - AluJb SINE Alu -9 303 1 402 231 77 84 chrX 117204631 117204942 -45394988 - L1MC5 LINE L1 -53 7908 7600 2194 105 0 7 chrX 117204946 117205240 -45394690 - AluSx SINE Alu -20 292 1 2244 123 0 0 chrX 117205365 117205665 -45394265 - AluSx SINE Alu -12 300 1 1126 254 106 21 chrX 117205665 117206099 -45393831 + L2 LINE L2 2652 3140 -173 2243 195 13 98 chrX 117206101 117207264 -45392666 + L1MC3 LINE L1 4927 5474 -743 * 3222 158 26 8 chrX 117206764 117207384 -45392546 + L1MA9 LINE L1 5486 6116 -196 609 220 7 0 chrX 117207403 117207553 -45392377 + L1MA10 LINE L1 6183 6333 -1 2283 109 0 0 chrX 117207562 117207855 -45392075 + AluSq SINE Alu 1 293 -20 515 197 39 112 chrX 117207862 117208040 -45391890 + L2 LINE L2 3148 3312 -1 434 242 152 0 chrX 117208075 117208207 -45391723 + MIR SINE MIR 8 159 -103 2326 93 3 3 chrX 117208320 117208622 -45391308 - AluSq SINE Alu -11 302 1 1882 149 10 10 chrX 117208630 117208919 -45391011 - AluJo SINE Alu -23 289 1 251 341 126 48 chrX 117210019 117210312 -45389618 - L2 LINE L2 -8 3264 2949 2306 100 0 3 chrX 117210478 117210779 -45389151 + AluSx SINE Alu 1 300 -12 278 320 88 49 chrX 117210808 117211136 -45388794 - L2 LINE L2 -607 2707 2367 607 182 34 7 chrX 117211162 117211310 -45388620 + L1MDa LINE L1 2499 2650 -3890 12024 185 63 35 chrX 117211323 117215227 -45384703 + L1PB1 LINE L1 6 4149 -2718 2299 93 0 0 chrX 117215227 117215516 -45384414 + AluSx SINE Alu 1 289 -23 12024 185 63 35 chrX 117215516 117218307 -45381623 + L1PB1 LINE L1 4149 6859 -8 601 335 114 53 chrX 117218325 117219143 -45380787 + L2 LINE L2 2403 3268 -4 21 36 0 0 chrX 117219711 117219739 -45380191 + AT_rich Low_complexity Low_complexity 1 28 0 2294 117 0 0 chrX 117221601 117221908 -45378022 + AluSq SINE Alu 1 307 -6 2131 113 0 3 chrX 117222332 117222634 -45377296 + AluJb SINE Alu 1 301 -11 2351 97 3 7 chrX 117223503 117223811 -45376119 - AluSq SINE Alu -6 307 1 1243 182 17 13 chrX 117224274 117224510 -45375420 + MIR SINE MIR 5 241 -21 819 173 0 8 chrX 117224613 117224746 -45375184 - FLAM_C SINE Alu -1 132 1 1071 188 127 65 chrX 117224765 117224891 -45375039 + MER2 DNA MER2_type 1 118 -226 1703 168 50 4 chrX 117224891 117225171 -45374759 - AluJo SINE Alu -19 293 1 1071 188 127 65 chrX 117225171 117225368 -45374562 + MER2 DNA MER2_type 118 344 0 2256 108 0 0 chrX 117225390 117225687 -45374243 + AluSx SINE Alu 1 297 -15 2199 133 7 0 chrX 117225694 117225996 -45373934 + AluSx SINE Alu 1 304 -8 2387 61 0 0 chrX 117226030 117226310 -45373620 + AluY SINE Alu 1 308 0 211 71 0 0 chrX 117226310 117226338 -45373592 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 212 303 26 26 chrX 117226979 117227055 -45372875 - MER5B DNA MER1_type -38 140 65 344 271 17 42 chrX 117227460 117227578 -45372352 + L1M4 LINE L1 5686 5800 -384 476 321 107 13 chrX 117227595 117227754 -45372176 + L2 LINE L2 2896 3069 -203 1449 181 19 4 chrX 117227763 117228023 -45371907 + Tigger7 DNA MER2_type 4 267 -2220 634 162 0 0 chrX 117228021 117228120 -45371810 + Tigger7 DNA MER2_type 2393 2491 0 * 1933 146 0 7 chrX 117228273 117228560 -45371370 - AluJb SINE Alu -23 289 5 2372 94 3 3 chrX 117228569 117228876 -45371054 - AluSq SINE Alu -6 307 1 206 118 0 0 chrX 117228998 117229032 -45370898 + (A)n Simple_repeat Simple_repeat 1 34 0 7911 12 0 0 chrX 117229129 117230358 -45369572 + L1PA2 LINE L1 4925 6153 -2 1720 186 0 7 chrX 117230941 117231221 -45368709 - AluJb SINE Alu -30 282 5 1962 107 78 0 chrX 117232113 117232384 -45367546 - AluSx SINE Alu -20 292 1 1974 131 3 3 chrX 117232767 117233074 -45366856 - AluSx SINE Alu 0 307 1 739 165 45 23 chrX 117233512 117233645 -45366285 - AluJo SINE Alu -176 136 1 1554 33 11 0 chrX 117234302 117234484 -45365446 - AluY SINE Alu -127 184 1 936 95 0 0 chrX 117234485 117234601 -45365329 - AluYb8 SINE Alu -202 116 1 1268 205 123 0 chrX 117235022 117235354 -45364576 - MER63B DNA MER1_type -63 373 1 2177 96 0 20 chrX 117236274 117236577 -45363353 - AluSx SINE Alu -15 297 1 1233 135 0 76 chrX 117237348 117237585 -45362345 - AluJb SINE Alu -10 302 84 1356 145 208 6 chrX 117237780 117238117 -45361813 + L1MC3 LINE L1 7286 7690 -95 1383 96 6 0 chrX 117238355 117238533 -45361397 + AluSp SINE Alu 1 179 -134 975 80 0 0 chrX 117238764 117238901 -45361029 - L1MB3 LINE L1 -7 6176 6040 534 228 89 6 chrX 117239367 117239525 -45360405 - MER58C DNA MER1_type -1 214 44 352 285 196 0 chrX 117239821 117239979 -45359951 - MIR SINE MIR -12 250 62 416 372 16 22 chrX 117240288 117240471 -45359459 - MIR SINE MIR -74 188 7 1967 127 9 41 chrX 117240685 117241000 -45358930 - AluJb SINE Alu -7 305 1 937 232 107 5 chrX 117241722 117241946 -45357984 - MIR SINE MIR 0 262 16 2189 118 16 0 chrX 117242295 117242599 -45357331 - AluSx SINE Alu -3 309 1 200 260 82 14 chrX 117242792 117242865 -45357065 + L2 LINE L2 1189 1266 -2048 417 321 115 14 chrX 117243226 117243444 -45356486 - MIR SINE MIR -20 242 3 249 318 9 9 chrX 117243573 117243680 -45356250 - L2 LINE L2 -1897 1417 1311 2080 114 0 17 chrX 117244079 117244208 -45355722 + AluSx SINE Alu 1 131 -177 225 0 0 0 chrX 117244208 117244233 -45355697 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2080 114 0 17 chrX 117244233 117244416 -45355514 + AluSx SINE Alu 131 308 0 290 330 60 72 chrX 117244454 117244562 -45355368 + L2 LINE L2 2872 2980 -292 2346 90 7 0 chrX 117244562 117244862 -45355068 - AluSx SINE Alu -10 302 1 290 330 60 72 chrX 117244862 117245102 -45354828 + L2 LINE L2 2980 3216 -56 1953 169 0 0 chrX 117245721 117246016 -45353914 + AluJb SINE Alu 2 296 -16 721 249 47 19 chrX 117246054 117246267 -45353663 + MER20 DNA MER1_type 1 219 0 274 296 51 10 chrX 117246267 117246365 -45353565 + L2 LINE L2 3170 3271 -1 204 306 0 0 chrX 117246755 117246804 -45353126 - L2 LINE L2 -8 3264 3216 221 143 0 0 chrX 117247084 117247119 -45352811 + (T)n Simple_repeat Simple_repeat 1 35 0 198 343 14 14 chrX 117247588 117247661 -45352269 - MER5A DNA MER1_type -67 122 50 180 0 0 0 chrX 117248305 117248325 -45351605 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1212 253 0 3 chrX 117248326 117248611 -45351319 - AluY SINE Alu -27 284 1 1123 263 7 7 chrX 117248646 117248947 -45350983 - AluSx SINE Alu 0 302 2 779 295 25 25 chrX 117248964 117249245 -45350685 - AluJo SINE Alu -31 281 1 194 261 54 85 chrX 117250149 117250279 -45349651 + L2 LINE L2 2764 2889 -425 228 297 62 0 chrX 117250297 117250361 -45349569 + L2 LINE L2 3006 3073 -240 4239 53 11 0 chrX 117250404 117250935 -45348995 - L1PA13 LINE L1 0 6163 5627 3929 143 22 6 chrX 117250938 117251668 -45348262 + L1P LINE L1 4185 4926 -1220 596 201 140 45 chrX 117251675 117251854 -45348076 + L2 LINE L2 3115 3310 -3 1473 170 8 8 chrX 117251960 117252207 -45347723 + AluJo SINE Alu 66 312 0 324 41 20 0 chrX 117252303 117252352 -45347578 + AluSc SINE Alu 248 297 -2 22 0 0 0 chrX 117252423 117252445 -45347485 + AT_rich Low_complexity Low_complexity 1 22 0 525 151 151 0 chrX 117252635 117252741 -45347189 - FLAM_C SINE Alu -11 122 1 219 36 0 0 chrX 117253817 117253845 -45346085 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1465 201 17 17 chrX 117253904 117254198 -45345732 + AluJo SINE Alu 1 294 -18 2181 110 27 0 chrX 117254204 117254504 -45345426 + AluSx SINE Alu 1 308 -4 28 48 0 0 chrX 117254913 117254955 -45344975 + AT_rich Low_complexity Low_complexity 1 42 0 471 292 28 11 chrX 117255180 117255358 -45344572 - L1ME3A LINE L1 -219 5951 5771 200 86 29 0 chrX 117255435 117255470 -45344460 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 2094 126 0 32 chrX 117255666 117255976 -45343954 - AluSx SINE Alu -12 300 1 234 0 0 0 chrX 117255992 117256018 -45343912 + (CA)n Simple_repeat Simple_repeat 2 27 0 2216 104 13 0 chrX 117256475 117256774 -45343156 + AluSx SINE Alu 1 303 -9 1317 181 0 9 chrX 117256781 117257013 -45342917 + AluJo SINE Alu 82 311 -1 396 255 94 10 chrX 117257126 117257318 -45342612 - L1ME3A LINE L1 -2249 5559 5352 2015 141 7 7 chrX 117257347 117257645 -45342285 - AluJo SINE Alu -7 305 8 1867 153 7 3 chrX 117257718 117258006 -45341924 - AluJb SINE Alu -23 289 1 412 317 42 14 chrX 117258214 117258356 -45341574 - MIR3 SINE MIR -24 184 39 1810 170 35 0 chrX 117258490 117258778 -45341152 + AluJo SINE Alu 1 298 -14 916 135 0 0 chrX 117259195 117259328 -45340602 - FLAM_C SINE Alu 0 133 1 391 313 108 12 chrX 117259764 117259930 -45340000 + MIR SINE MIR 21 202 -60 1036 209 0 0 chrX 117260536 117260771 -45339159 + L1PA7 LINE L1 5902 6136 -18 252 0 0 0 chrX 117260779 117260807 -45339123 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 481 258 58 66 chrX 117261155 117261483 -45338447 - L1MC/D LINE L1 -382 5739 5411 322 304 108 57 chrX 117261519 117261815 -45338115 - L1MC/D LINE L1 -807 5339 5029 281 318 47 32 chrX 117261883 117262285 -45337645 - L1MC/D LINE L1 -1209 4937 4530 976 224 14 31 chrX 117262470 117262760 -45337170 + AluY SINE Alu 1 285 -16 414 0 0 0 chrX 117262760 117262806 -45337124 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 418 165 0 0 chrX 117262807 117262886 -45337044 + AluSx SINE Alu 27 105 -208 347 194 28 14 chrX 117262897 117262969 -45336961 - MER5B DNA MER1_type -103 75 3 1573 114 0 5 chrX 117263196 117263475 -45336455 + AluSx SINE Alu 94 371 0 332 295 51 32 chrX 117265134 117265290 -45334640 + L1M4 LINE L1 2850 3008 -3138 17890 48 6 0 chrX 117265548 117268487 -45331443 + L1PA4 LINE L1 3054 6007 -148 612 180 0 0 chrX 117268588 117268688 -45331242 + FRAM SINE Alu 42 141 -35 808 147 0 7 chrX 117268780 117268916 -45331014 - AluJb SINE Alu -177 135 1 554 239 49 63 chrX 117269180 117269310 -45330620 - L1M4 LINE L1 -1480 4666 4536 2285 88 16 7 chrX 117269310 117269615 -45330315 - AluSc SINE Alu -1 308 1 2254 90 10 0 chrX 117269622 117269912 -45330018 - AluSp SINE Alu -15 298 6 554 239 49 63 chrX 117269912 117270120 -45329810 - L1M4 LINE L1 -1616 4530 4325 1682 107 76 11 chrX 117270164 117270427 -45329503 - AluSx SINE Alu -29 283 4 21 82 0 0 chrX 117270551 117270600 -45329330 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chrX 117270926 117270947 -45328983 + AT_rich Low_complexity Low_complexity 1 21 0 1838 158 0 7 chrX 117270947 117271231 -45328699 - AluJo SINE Alu -30 282 1 526 248 0 0 chrX 117271338 117271439 -45328491 + MER91B DNA MER1_type 90 190 0 207 299 65 19 chrX 117271619 117271726 -45328204 - L2 LINE L2 -585 2729 2618 779 269 112 20 chrX 117272000 117272305 -45327625 - MLT1J LTR MaLR -40 471 139 1486 180 82 32 chrX 117272438 117272843 -45327087 - L1 LINE L1 -1612 4534 4110 387 0 0 0 chrX 117273030 117273073 -45326857 + (TG)n Simple_repeat Simple_repeat 2 44 0 556 108 0 0 chrX 117273091 117273165 -45326765 - AluSq SINE Alu -48 265 192 1118 78 14 7 chrX 117273165 117273306 -45326624 - AluSq SINE Alu -171 142 1 1448 157 5 58 chrX 117273386 117273504 -45326426 + AluJo SINE Alu 12 135 -177 2166 96 0 0 chrX 117273504 117273774 -45326156 - AluSg SINE Alu -20 290 21 1448 157 5 58 chrX 117273774 117273937 -45325993 + AluJo SINE Alu 135 267 -45 243 0 0 0 chrX 117273948 117273975 -45325955 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 847 153 7 7 chrX 117274066 117274203 -45325727 + FLAM_C SINE Alu 1 137 -6 1436 185 3 57 chrX 117274205 117274519 -45325411 + AluJo SINE Alu 1 297 -15 22 0 0 0 chrX 117275317 117275339 -45324591 + AT_rich Low_complexity Low_complexity 1 22 0 556 208 10 0 chrX 117275815 117275911 -45324019 + FLAM_A SINE Alu 26 122 -20 369 102 0 0 chrX 117276772 117276831 -45323099 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1157 158 16 5 chrX 117276834 117277018 -45322912 - AluJb SINE Alu -23 289 104 481 256 119 93 chrX 117277024 117277410 -45322520 - L1ME3A LINE L1 -236 5934 5539 525 303 42 18 chrX 117277513 117277678 -45322252 + MIR3 SINE MIR 34 202 -6 221 294 118 12 chrX 117277669 117277754 -45322176 - MIR SINE MIR -113 149 56 * 486 261 0 36 chrX 117278177 117278315 -45321615 + L2 LINE L2 3180 3312 -1 217 273 126 56 chrX 117279435 117279578 -45320352 + L2 LINE L2 3159 3311 -2 21 0 0 0 chrX 117279875 117279896 -45320034 + AT_rich Low_complexity Low_complexity 1 21 0 283 232 61 10 chrX 117280851 117280950 -45318980 + L1ME4a LINE L1 6015 6118 -3 1652 159 22 53 chrX 117280950 117281270 -45318660 + AluJo SINE Alu 1 310 -2 2174 101 27 0 chrX 117281566 117281862 -45318068 + AluSp SINE Alu 1 304 -9 306 0 0 0 chrX 117281862 117281896 -45318034 + (GA)n Simple_repeat Simple_repeat 1 34 0 * 839 28 0 9 chrX 117281894 117282001 -45317929 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 460 247 0 0 chrX 117282101 117282182 -45317748 - AluJ/FLAM SINE Alu -230 82 2 386 78 0 16 chrX 117282321 117282385 -45317545 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 2093 129 3 0 chrX 117282476 117282770 -45317160 - AluSx SINE Alu -17 295 1 911 198 12 6 chrX 117283655 117283822 -45316108 + FRAM SINE Alu 1 168 -8 442 285 122 69 chrX 117283871 117284422 -45315508 + L2 LINE L2 2192 2771 -543 5176 100 16 12 chrX 117284527 117285215 -45314715 + LTR8 LTR ERV1 1 691 0 836 154 122 19 chrX 117285371 117285527 -45314403 - FAM SINE Alu 0 175 4 1899 141 3 0 chrX 117285778 117286062 -45313868 - AluJb SINE Alu -27 285 1 1817 163 0 3 chrX 117286251 117286533 -45313397 - AluSx SINE Alu -29 283 3 259 195 0 69 chrX 117286611 117286698 -45313232 - L1ME4a LINE L1 -65 6056 5976 804 227 48 5 chrX 117286750 117286957 -45312973 - MIR SINE MIR -42 220 5 234 308 209 39 chrX 117286970 117287152 -45312778 + L2 LINE L2 2849 3061 -211 821 204 17 117 chrX 117288032 117288272 -45311658 + L2 LINE L2 2244 2459 -855 362 229 12 0 chrX 117288341 117288424 -45311506 + L2 LINE L2 2920 3003 -310 2179 100 0 4 chrX 117288672 117288972 -45310958 - AluSg SINE Alu 0 299 1 484 181 0 0 chrX 117289118 117289190 -45310740 - FLAM SINE Alu -26 117 46 1614 177 8 0 chrX 117289595 117289861 -45310069 + AluJo SINE Alu 1 268 -44 290 45 23 0 chrX 117289874 117289918 -45310012 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 686 194 91 46 chrX 117290513 117290688 -45309242 + MIR3 SINE MIR 23 205 -3 1562 165 9 86 chrX 117292210 117292537 -45307393 - AluJb SINE Alu -2 310 9 27 0 0 0 chrX 117292655 117292682 -45307248 + AT_rich Low_complexity Low_complexity 1 27 0 1388 246 56 69 chrX 117292690 117293210 -45306720 + Charlie8 DNA MER1_type 9 521 -1896 244 227 45 15 chrX 117293206 117293272 -45306658 + Charlie8 DNA MER1_type 1361 1428 -989 * 972 161 0 0 chrX 117293407 117293556 -45306374 + FRAM SINE Alu 1 146 -30 540 81 0 0 chrX 117293586 117293660 -45306270 + (GGGAA)n Simple_repeat Simple_repeat 1 74 0 401 94 0 16 chrX 117293768 117293832 -45306098 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 324 0 0 0 chrX 117293985 117294021 -45305909 + (CA)n Simple_repeat Simple_repeat 2 37 0 542 41 14 0 chrX 117294335 117294408 -45305522 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 1827 153 7 3 chrX 117294932 117295226 -45304704 - AluJo SINE Alu -7 305 11 680 269 11 29 chrX 117295413 117295485 -45304445 - MIR3 SINE MIR -2 206 134 2613 193 35 10 chrX 117295485 117295978 -45303952 - MLT1D LTR MaLR 0 505 1 680 269 11 29 chrX 117295978 117296080 -45303850 - MIR3 SINE MIR -74 134 35 483 272 41 24 chrX 117297499 117297668 -45302262 + MIR SINE MIR 77 248 -14 221 197 0 98 chrX 117297931 117297992 -45301938 - MIR3 SINE MIR -4 204 150 455 353 0 18 chrX 117298147 117298314 -45301616 - MIR3 SINE MIR -41 167 4 2919 53 9 0 chrX 117298859 117299199 -45300731 + L1PA7 LINE L1 5804 6146 -8 698 156 0 0 chrX 117299222 117299318 -45300612 + FLAM_C SINE Alu 27 122 -21 297 0 0 0 chrX 117299318 117299351 -45300579 + (GA)n Simple_repeat Simple_repeat 2 34 0 194 194 81 65 chrX 117299437 117299499 -45300431 + L2 LINE L2 3193 3255 -17 1968 123 9 35 chrX 117299611 117299927 -45300003 + AluSx SINE Alu 1 308 -4 619 181 61 37 chrX 117300134 117300293 -45299637 + MIR SINE MIR 3 163 -63 1180 228 121 105 chrX 117300306 117300795 -45299135 + MER21B LTR ERV1 13 520 -343 2122 129 16 0 chrX 117300795 117301098 -45298832 - AluSx SINE Alu -4 308 1 1180 228 121 105 chrX 117301098 117301354 -45298576 + MER21B LTR ERV1 520 770 -93 250 132 0 0 chrX 117301508 117301546 -45298384 + MIR SINE MIR 159 196 -66 456 19 0 0 chrX 117301725 117301778 -45298152 + (TC)n Simple_repeat Simple_repeat 2 54 0 812 165 0 0 chrX 117303746 117303867 -45296063 - FLAM_A SINE Alu -12 121 1 1094 233 57 8 chrX 117304778 117305023 -45294907 - MIR SINE MIR -3 259 3 2391 93 0 0 chrX 117305255 117305557 -45294373 + AluSx SINE Alu 1 302 -10 440 255 69 40 chrX 117305695 117305844 -45294086 + MIR SINE MIR 38 190 -65 673 178 8 59 chrX 117306017 117306135 -45293795 + FLAM_A SINE Alu 1 112 -30 195 42 0 0 chrX 117306135 117306159 -45293771 + (CA)n Simple_repeat Simple_repeat 1 24 0 250 229 0 0 chrX 117306507 117306555 -45293375 - L2 LINE L2 -6 3266 3219 1692 150 42 36 chrX 117306677 117306984 -45292946 + AluJo SINE Alu 4 312 0 656 217 87 57 chrX 117307358 117307588 -45292342 - L1ME3 LINE L1 0 6170 5934 2158 92 31 0 chrX 117308310 117308603 -45291327 + AluSg SINE Alu 1 302 -8 360 176 0 0 chrX 117308603 117308671 -45291259 + GA-rich Low_complexity Low_complexity 1 68 0 325 348 117 37 chrX 117308673 117308998 -45290932 - L2 LINE L2 -357 2957 2607 679 296 210 18 chrX 117309009 117309519 -45290411 - L2 LINE L2 -980 2334 1727 564 179 116 36 chrX 117310002 117310114 -45289816 + FLAM_A SINE Alu 1 121 -12 834 144 64 0 chrX 117310143 117310268 -45289662 - FLAM_C SINE Alu 0 133 1 331 202 12 48 chrX 117310373 117310457 -45289473 - L2 LINE L2 -4 3309 3229 242 316 132 26 chrX 117310621 117310773 -45289157 - MIR3 SINE MIR -9 199 32 2291 101 3 0 chrX 117311679 117311977 -45287953 + AluSx SINE Alu 1 299 -13 22 35 0 0 chrX 117311977 117312006 -45287924 + AT_rich Low_complexity Low_complexity 1 29 0 594 318 9 19 chrX 117312320 117312531 -45287399 - MIR SINE MIR -2 260 52 638 286 53 16 chrX 117312656 117312845 -45287085 - MIR SINE MIR -8 254 59 2965 136 2 12 chrX 117312920 117313347 -45286583 + MER61B LTR ERV1 3 425 0 414 324 133 9 chrX 117313889 117314099 -45285831 - MIR SINE MIR -6 256 21 232 236 101 11 chrX 117314819 117314908 -45285022 - LTR16B LTR ERVL -127 337 241 301 286 0 0 chrX 117315024 117315101 -45284829 - LTR16B LTR ERVL -381 83 7 582 263 152 48 chrX 117315114 117315403 -45284527 + L2 LINE L2 2995 3313 0 219 69 0 0 chrX 117315653 117315682 -45284248 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 212 250 76 22 chrX 117315881 117315973 -45283957 + MIR SINE MIR 102 198 -64 215 150 25 0 chrX 117316042 117316082 -45283848 + A-rich Low_complexity Low_complexity 1 41 0 219 226 75 0 chrX 117316239 117316292 -45283638 - MIR3 SINE MIR -1 207 151 264 251 145 34 chrX 117316608 117316729 -45283201 + MIR SINE MIR 13 147 -61 197 235 0 20 chrX 117317491 117317542 -45282388 + L2 LINE L2 3264 3313 0 1772 117 8 0 chrX 117317611 117317858 -45282072 + AluSq SINE Alu 1 249 -64 327 104 0 0 chrX 117317858 117317906 -45282024 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 279 214 204 10 chrX 117318110 117318208 -45281722 - MIR3 SINE MIR -6 202 86 392 280 68 0 chrX 117318674 117318792 -45281138 + L1MC5 LINE L1 5643 5768 -2040 4915 86 57 47 chrX 117318792 117319075 -45280855 + L1PA16 LINE L1 5435 5714 -452 4915 115 29 6 chrX 117319075 117319790 -45280140 + L1PA16 LINE L1 5435 6166 0 4915 86 57 47 chrX 117319790 117319890 -45280040 + L1PA16 LINE L1 5714 6166 0 524 143 0 0 chrX 117319890 117319974 -45279956 - AluS SINE Alu -4 308 225 2085 125 27 0 chrX 117319974 117320270 -45279660 + L1PB4 LINE L1 5852 6155 -1 1330 237 60 111 chrX 117320288 117320466 -45279464 + L1MC5 LINE L1 5759 5944 -2036 398 52 0 17 chrX 117320466 117320524 -45279406 + (CA)n Simple_repeat Simple_repeat 2 58 0 1330 237 60 111 chrX 117320524 117320920 -45279010 + L1MC5 LINE L1 5944 6358 -1622 1702 163 3 11 chrX 117320920 117321227 -45278703 - AluJb SINE Alu 0 307 3 1330 237 60 111 chrX 117321227 117321929 -45278001 + L1MC5 LINE L1 6358 6972 -1008 1956 139 17 17 chrX 117321929 117322230 -45277700 + AluJo SINE Alu 1 301 -11 1330 237 60 111 chrX 117322230 117322498 -45277432 + L1MC5 LINE L1 6972 7252 -728 233 342 0 13 chrX 117322509 117322664 -45277266 + L1MC4a LINE L1 7254 7406 -402 363 253 37 56 chrX 117323688 117323904 -45276026 - L1ME3A LINE L1 0 6170 5961 400 195 39 47 chrX 117324000 117324128 -45275802 - L1MC5 LINE L1 -431 7530 7404 2247 113 7 0 chrX 117324664 117325033 -45274897 + AluSx SINE Alu 1 371 0 781 264 110 77 chrX 117326510 117327012 -45272918 + L1M4 LINE L1 2638 3163 -2983 1561 186 3 17 chrX 117327012 117327302 -45272628 + AluJb SINE Alu 1 286 -26 781 264 110 77 chrX 117327302 117327371 -45272559 + L1M4 LINE L1 3163 3228 -2918 198 0 0 0 chrX 117327623 117327645 -45272285 + (CA)n Simple_repeat Simple_repeat 2 23 0 21 82 0 0 chrX 117327645 117327694 -45272236 + AT_rich Low_complexity Low_complexity 1 49 0 710 271 62 58 chrX 117327760 117327818 -45272112 + L1M4 LINE L1 4267 4323 -1823 2059 103 62 3 chrX 117327818 117328110 -45271820 + AluSx SINE Alu 4 312 0 710 271 62 58 chrX 117328110 117328325 -45271605 + L1M4 LINE L1 4323 4536 -1610 2242 93 10 0 chrX 117328325 117328615 -45271315 + AluSp SINE Alu 6 298 -15 2285 88 16 7 chrX 117328622 117328927 -45271003 + AluSc SINE Alu 1 308 -1 710 271 62 58 chrX 117328927 117329294 -45270636 + L1M4 LINE L1 4541 4918 -1228 976 109 0 7 chrX 117329319 117329456 -45270474 + AluJb SINE Alu 1 136 -176 817 207 0 0 chrX 117329536 117329681 -45270249 - FRAM SINE Alu -31 145 1 263 247 156 17 chrX 117329686 117329917 -45270013 + L1M4 LINE L1 5031 5293 -853 359 203 51 0 chrX 117329943 117330022 -45269908 - MIR SINE MIR 0 262 180 632 215 104 110 chrX 117330023 117330514 -45269416 + L1M1 LINE L1 5328 5814 -362 2169 112 0 3 chrX 117330594 117330889 -45269041 + AluSx SINE Alu 1 294 -18 1866 154 0 19 chrX 117330964 117331275 -45268655 - AluJo SINE Alu -7 305 1 647 289 32 5 chrX 117332041 117332228 -45267702 - MIR SINE MIR -4 258 67 233 313 0 12 chrX 117332545 117332625 -45267305 + CT-rich Low_complexity Low_complexity 4 82 0 1897 148 10 72 chrX 117333104 117333504 -45266426 + MLT1B LTR MaLR 16 390 0 2009 139 7 0 chrX 117333821 117334135 -45265795 - AluSx SINE Alu 0 317 2 574 282 84 20 chrX 117334141 117334343 -45265587 + MIR SINE MIR 48 262 0 502 254 119 35 chrX 117334756 117334957 -45264973 + MIR SINE MIR 31 248 -14 186 186 70 0 chrX 117335020 117335063 -45264867 + L2 LINE L2 3222 3267 -5 984 159 0 0 chrX 117335432 117335583 -45264347 + FRAM SINE Alu 4 154 -12 401 331 16 0 chrX 117336310 117336434 -45263496 - L2 LINE L2 0 3313 3188 1970 214 43 75 chrX 117336434 117336994 -45262936 - MLT1F1 LTR MaLR 0 567 1 1663 162 27 30 chrX 117337212 117337508 -45262422 - AluJo SINE Alu -17 295 1 2558 62 0 0 chrX 117338038 117338347 -45261583 - AluY SINE Alu -1 310 2 337 307 53 37 chrX 117338501 117338934 -45260996 + L1MC4 LINE L1 4498 4937 -1209 322 304 108 57 chrX 117339002 117339298 -45260632 + L1MC4 LINE L1 5029 5339 -807 532 305 78 54 chrX 117339334 117339832 -45260098 + L1MC4 LINE L1 5411 5920 -1888 859 139 0 0 chrX 117339887 117340009 -45259921 - FLAM_A SINE Alu -11 122 1 345 283 28 34 chrX 117340135 117340312 -45259618 + L1ME4a LINE L1 5946 6121 0 229 421 9 0 chrX 117340421 117340528 -45259402 - L2 LINE L2 -636 2678 2571 1390 165 23 129 chrX 117340976 117341364 -45258566 + MER7A DNA MER2_type 1 345 -1 635 270 20 7 chrX 117341955 117342107 -45257823 + MIR SINE MIR 34 187 -75 348 300 29 135 chrX 117342144 117342484 -45257446 + L2 LINE L2 2966 3269 -3 289 284 39 29 chrX 117343244 117343346 -45256584 - MIR SINE MIR -18 244 142 303 326 0 0 chrX 117343375 117343464 -45256466 + L1MC4 LINE L1 6614 6702 -1340 307 214 22 45 chrX 117343508 117343597 -45256333 + L1MC4 LINE L1 6610 6696 -1346 251 211 11 0 chrX 117343633 117343723 -45256207 + (TA)n Simple_repeat Simple_repeat 1 91 0 186 373 0 15 chrX 117343743 117343810 -45256120 - L2 LINE L2 -86 3186 3121 2480 48 0 3 chrX 117344077 117344372 -45255558 + AluY SINE Alu 1 294 -17 741 242 58 58 chrX 117344394 117344687 -45255243 - MER102b DNA MER1_type -2 339 47 552 350 93 52 chrX 117344980 117345659 -45254271 + L2 LINE L2 2557 3269 -3 1799 176 0 23 chrX 117345897 117346199 -45253731 + AluJb SINE Alu 1 295 -17 273 242 20 61 chrX 117346503 117346602 -45253328 - MIR SINE MIR -72 190 96 252 304 14 40 chrX 117346971 117347119 -45252811 - MIR3 SINE MIR -62 146 3 225 0 0 0 chrX 117347178 117347203 -45252727 + (CTG)n Simple_repeat Simple_repeat 2 26 0 358 212 121 0 chrX 117347929 117348028 -45251902 - MIR SINE MIR -49 213 103 1552 167 35 17 chrX 117348030 117348317 -45251613 + AluJb SINE Alu 1 292 -20 336 102 0 0 chrX 117348317 117348366 -45251564 + (GA)n Simple_repeat Simple_repeat 1 49 0 253 228 0 18 chrX 117348691 117348748 -45251182 - MER63 DNA MER1_type -152 684 3 282 236 34 45 chrX 117348817 117348906 -45251024 + MIR SINE MIR 62 149 -113 2435 54 0 3 chrX 117348918 117349214 -45250716 + AluY SINE Alu 1 295 -16 581 186 8 101 chrX 117349226 117349322 -45250608 + L1MDb LINE L1 1100 1203 -5206 1759 120 67 25 chrX 117349322 117349605 -45250325 - AluSx SINE Alu -17 295 1 581 186 8 101 chrX 117349605 117349755 -45250175 + L1MDb LINE L1 1203 1323 -5086 520 250 0 0 chrX 117349775 117349891 -45250039 + MER63A DNA MER1_type 57 172 -38 274 323 100 31 chrX 117350629 117350759 -45249171 - MIR3 SINE MIR -49 159 21 934 202 70 58 chrX 117351580 117351804 -45248126 - MIR SINE MIR 0 262 33 2258 95 14 0 chrX 117351804 117352098 -45247832 - AluSc SINE Alu -11 298 1 934 202 70 58 chrX 117352098 117352131 -45247799 - MIR SINE MIR -229 33 2 279 323 24 72 chrX 117352302 117352469 -45247461 - L2 LINE L2 -195 3077 2919 795 209 3 0 chrX 117352612 117352943 -45246987 + (TG)n Simple_repeat Simple_repeat 1 332 0 1551 164 217 23 chrX 117353305 117353743 -45246187 - L1ME1 LINE L1 -8 6158 5636 1659 191 10 48 chrX 117353755 117353839 -45246091 + L1ME4a LINE L1 5254 5340 -826 2376 69 10 0 chrX 117353839 117354129 -45245801 + AluSc SINE Alu 1 293 -16 1659 191 10 48 chrX 117354129 117354458 -45245472 + L1ME4a LINE L1 5340 5651 -515 599 196 116 40 chrX 117356553 117356829 -45243101 + L1MC5 LINE L1 7637 7933 -28 22 56 0 0 chrX 117356888 117356924 -45243006 + AT_rich Low_complexity Low_complexity 1 36 0 325 319 43 58 chrX 117356992 117357199 -45242731 + L2 LINE L2 2844 3047 -225 1130 217 25 8 chrX 117357632 117357867 -45242063 + MER8 DNA MER2_type 1 239 0 405 213 84 73 chrX 117357929 117358202 -45241728 + L1ME4a LINE L1 5843 6118 -3 1232 275 105 17 chrX 117358253 117359103 -45240827 + L1MC5 LINE L1 4993 5397 -749 351 0 0 0 chrX 117359865 117359904 -45240026 + (CA)n Simple_repeat Simple_repeat 1 39 0 2076 160 0 0 chrX 117360930 117361242 -45238688 - AluSx SINE Alu 0 312 1 1071 193 79 4 chrX 117361349 117361577 -45238353 - MLT1D LTR MaLR 0 505 261 484 69 14 0 chrX 117361918 117361990 -45237940 - L1MA9 LINE L1 0 6312 6240 815 176 0 0 chrX 117361999 117362124 -45237806 - FLAM_C SINE Alu -18 125 1 1494 216 3 14 chrX 117362272 117362563 -45237367 + AluJo SINE Alu 2 289 -23 2152 89 25 0 chrX 117363457 117363739 -45236191 - AluSc SINE Alu -20 289 1 260 91 23 0 chrX 117364748 117364792 -45235138 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 308 226 29 69 chrX 117366104 117366206 -45233724 + L1 LINE L1 4933 5030 -1116 610 216 60 0 chrX 117366227 117366537 -45233393 + FRAM SINE Alu 34 351 0 865 129 17 17 chrX 117366537 117366715 -45233215 + GA-rich Low_complexity Low_complexity 2 179 0 2049 138 0 13 chrX 117366758 117367062 -45232868 - AluJb SINE Alu -12 300 1 327 298 84 33 chrX 117367183 117367619 -45232311 + L1 LINE L1 4672 5136 -1010 745 220 19 53 chrX 117367743 117368758 -45231172 + L1MC5 LINE L1 6625 7745 -216 505 247 0 41 chrX 117368842 117368962 -45230968 + L1MC5 LINE L1 7764 7879 -82 520 241 110 16 chrX 117368962 117369153 -45230777 - MER63A DNA MER1_type -1 209 1 505 247 0 41 chrX 117369153 117369178 -45230752 + L1MC5 LINE L1 7879 7903 -58 540 211 0 0 chrX 117369179 117369274 -45230656 - L2 LINE L2 -6 3307 3213 1441 207 31 23 chrX 117369275 117369627 -45230303 - MLT1C LTR MaLR 0 467 113 1252 141 9 27 chrX 117369627 117369847 -45230083 - AluJb SINE Alu 0 312 97 25 0 0 0 chrX 117369863 117369888 -45230042 + AT_rich Low_complexity Low_complexity 1 25 0 3503 166 61 33 chrX 117369909 117370628 -45229302 + L1MA9 LINE L1 5536 6274 -38 2850 147 59 2 chrX 117370638 117371113 -45228817 - L1MB2 LINE L1 -18 6153 5652 2235 119 0 0 chrX 117371983 117372276 -45227654 - AluSx SINE Alu -19 293 1 566 264 102 34 chrX 117373363 117373598 -45226332 + MIR SINE MIR 8 258 -4 182 286 29 14 chrX 117375217 117375287 -45224643 + L2 LINE L2 1531 1601 -1713 194 344 42 0 chrX 117375571 117375667 -45224263 + L2 LINE L2 1932 2031 -1283 680 209 7 22 chrX 117375668 117375807 -45224123 - AluJo SINE Alu -174 138 2 231 377 58 7 chrX 117375813 117375951 -45223979 + L2 LINE L2 2040 2184 -1130 44199 42 4 5 chrX 117376177 117382336 -45217594 + L1PA4 LINE L1 7 6155 0 440 271 10 0 chrX 117382786 117382882 -45217048 + MER94 DNA DNA 37 133 -1 206 271 9 112 chrX 117383182 117383289 -45216641 + MER91B DNA MER1_type 1 96 -94 1845 159 0 7 chrX 117383300 117383590 -45216340 - AluJo SINE Alu -24 288 1 522 248 0 0 chrX 117383697 117383798 -45216132 + MER91B DNA MER1_type 90 190 0 198 299 65 19 chrX 117383978 117384085 -45215845 - L2 LINE L2 -585 2729 2618 1330 256 97 34 chrX 117384357 117384802 -45215128 - MLT1J LTR MaLR -38 473 1 191 243 71 29 chrX 117384828 117384898 -45215032 - L2 LINE L2 -824 2490 2418 201 343 14 0 chrX 117385900 117385973 -45213957 - MIR SINE MIR -154 108 35 2598 45 0 13 chrX 117386724 117387038 -45212892 + AluY SINE Alu 1 310 -1 293 228 18 70 chrX 117388077 117388191 -45211739 - L1ME4a LINE L1 -2 6119 6012 1971 148 7 0 chrX 117388558 117388842 -45211088 + AluJo SINE Alu 1 286 -26 240 35 0 0 chrX 117388842 117388871 -45211059 + (GA)n Simple_repeat Simple_repeat 2 30 0 264 111 0 0 chrX 117388891 117388936 -45210994 + (TG)n Simple_repeat Simple_repeat 2 46 0 833 104 88 0 chrX 117389503 117389628 -45210302 + MER85 DNA T2_type 4 139 0 720 210 174 9 chrX 117389731 117389955 -45209975 - MIR SINE MIR 0 262 2 297 0 0 0 chrX 117390369 117390402 -45209528 + (CA)n Simple_repeat Simple_repeat 2 34 0 449 211 119 9 chrX 117390503 117390612 -45209318 - L2 LINE L2 0 3313 3193 249 274 43 123 chrX 117391107 117391432 -45208498 + L2 LINE L2 201 499 -2815 274 267 151 0 chrX 117391453 117391539 -45208391 + L2 LINE L2 3214 3312 -1 1594 176 18 76 chrX 117391558 117391888 -45208042 - AluJo SINE Alu -1 311 1 811 214 6 6 chrX 117391888 117392047 -45207883 - MER58B DNA MER1_type -11 330 172 1901 90 34 0 chrX 117392058 117392325 -45207605 - L1MA2 LINE L1 0 6304 6029 1082 145 56 28 chrX 117392325 117392504 -45207426 - THE1B LTR MaLR 0 364 181 315 254 0 0 chrX 117392521 117392588 -45207342 + MIR SINE MIR 184 250 -12 1334 169 51 44 chrX 117392976 117393272 -45206658 - AluJo SINE Alu -14 298 1 553 328 147 52 chrX 117393569 117394400 -45205530 + L2 LINE L2 1467 2385 -929 1981 121 10 14 chrX 117394400 117394697 -45205233 - AluSq SINE Alu -17 296 1 553 328 147 52 chrX 117394697 117394732 -45205198 + L2 LINE L2 2385 2415 -899 227 293 0 0 chrX 117394758 117394816 -45205114 - L2 LINE L2 -5 3308 3251 867 131 0 0 chrX 117396399 117396529 -45203401 + FLAM_C SINE Alu 13 142 -1 2810 132 5 24 chrX 117396853 117396956 -45202974 + L1MC1 LINE L1 5230 5333 -1000 1665 176 3 32 chrX 117396956 117397268 -45202662 + AluJo SINE Alu 1 303 -9 2810 132 5 24 chrX 117397268 117397635 -45202295 + L1MC1 LINE L1 5333 5692 -641 823 152 8 0 chrX 117397636 117397761 -45202169 + AluJo SINE Alu 1 126 -186 18500 142 70 30 chrX 117397763 117397854 -45202076 + L1M1 LINE L1 4 90 -7475 243 0 0 0 chrX 117397854 117397881 -45202049 + (CA)n Simple_repeat Simple_repeat 2 28 0 18500 142 70 30 chrX 117397881 117400996 -45198934 + L1M1 LINE L1 90 3076 -4489 2392 92 0 3 chrX 117400996 117401299 -45198631 + AluSq SINE Alu 1 302 -11 18500 142 70 30 chrX 117401299 117401318 -45198612 + L1M1 LINE L1 3076 3093 -4472 1935 153 184 11 chrX 117401318 117401683 -45198247 + MSTA LTR MaLR 1 428 0 18500 142 70 30 chrX 117401683 117401765 -45198165 + L1M1 LINE L1 3093 3448 -4117 3140 77 19 19 chrX 117401765 117402035 -45197895 + L1MA1 LINE L1 5868 6140 -162 2174 121 0 7 chrX 117402035 117402340 -45197590 + AluSx SINE Alu 1 303 -9 3140 77 19 19 chrX 117402340 117402496 -45197434 + L1MA1 LINE L1 6139 6294 -8 28 0 0 0 chrX 117402496 117402524 -45197406 + AT_rich Low_complexity Low_complexity 1 28 0 1098 137 0 18 chrX 117402526 117402694 -45197236 + AluJo SINE Alu 131 295 -17 1320 148 9 23 chrX 117402706 117402922 -45197008 + AluJo SINE Alu 93 305 -7 3504 141 13 0 chrX 117402924 117403478 -45196452 + L1MC1 LINE L1 5685 6245 -88 2033 21 0 0 chrX 117403606 117403840 -45196090 - L1P2 LINE L1 -596 5559 5326 2537 42 0 0 chrX 117403840 117404127 -45195803 + L1PA4 LINE L1 5868 6155 0 5585 151 36 3 chrX 117404406 117405342 -45194588 + L1MA5 LINE L1 5327 6293 -7 1269 75 0 0 chrX 117405349 117405509 -45194421 + L1MA4 LINE L1 6126 6285 -15 263 253 104 44 chrX 117405907 117406089 -45193841 + L1ME4a LINE L1 5929 6121 0 449 246 0 75 chrX 117407382 117407516 -45192414 + L1MB8 LINE L1 5683 5806 -2002 201 195 0 0 chrX 117407517 117407558 -45192372 + (CA)n Simple_repeat Simple_repeat 2 42 0 2158 123 125 14 chrX 117407960 117408311 -45191619 + MLT1B LTR MaLR 1 390 0 1897 154 18 21 chrX 117408375 117408712 -45191218 + L1MB8 LINE L1 5842 6177 -1 1715 154 11 18 chrX 117408722 117409008 -45190922 + AluJb SINE Alu 1 284 -28 265 288 36 9 chrX 117409114 117409225 -45190705 + L1M4 LINE L1 3325 3438 -2708 798 287 30 17 chrX 117409480 117409780 -45190150 + L1M4 LINE L1 3688 3991 -2155 401 256 123 45 chrX 117409795 117410175 -45189755 + L1M4 LINE L1 4763 5169 -977 293 201 167 52 chrX 117410302 117410555 -45189375 + L1MC/D LINE L1 5095 5373 -774 46 0 0 0 chrX 117410555 117410601 -45189329 + AT_rich Low_complexity Low_complexity 1 46 0 702 186 0 16 chrX 117410604 117410728 -45189202 - FLAM_C SINE Alu 0 143 22 1509 170 66 38 chrX 117410730 117411019 -45188911 - AluJo SINE Alu -15 297 1 2116 88 53 0 chrX 117411029 117411312 -45188618 - AluSx SINE Alu -14 298 1 851 231 91 103 chrX 117411314 117411504 -45188426 + L1MC/D LINE L1 5363 5554 -2254 1738 147 6 35 chrX 117411504 117411818 -45188112 - AluJb SINE Alu -7 305 1 851 231 91 103 chrX 117411818 117412043 -45187887 + L1MC/D LINE L1 5554 5773 -2035 382 284 43 0 chrX 117412260 117412376 -45187554 - MIR SINE MIR -26 236 116 264 262 0 0 chrX 117412381 117412442 -45187488 + ORSL DNA AcHobo 4 64 -211 575 198 28 28 chrX 117412444 117412550 -45187380 + AluJo SINE Alu 120 225 -87 1403 98 50 114 chrX 117412726 117413032 -45186898 - LTR12 LTR ERV1 0 714 253 * 5997 87 14 1 chrX 117413025 117413801 -45186129 - HERV9 LTR ERV1 -2668 5731 4946 16138 105 64 60 chrX 117413801 117417740 -45182190 - HERV9 LTR ERV1 0 2438 1 696 103 0 0 chrX 117417986 117418073 -45181857 + FAM SINE Alu 81 167 -18 586 126 63 157 chrX 117418073 117418296 -45181634 + ORSL DNA AcHobo 74 275 0 515 196 118 0 chrX 117418297 117418399 -45181531 - MIR SINE MIR -142 120 7 316 167 15 15 chrX 117418614 117418680 -45181250 - MIR SINE MIR -123 139 74 21 36 0 0 chrX 117418772 117418800 -45181130 + AT_rich Low_complexity Low_complexity 1 28 0 717 281 167 26 chrX 117419018 117419395 -45180535 - L3 LINE CR1 -739 838 409 819 146 5 119 chrX 117420297 117420482 -45179448 + FRAM SINE Alu 2 165 -11 808 272 53 4 chrX 117420794 117421037 -45178893 - MIR SINE MIR 0 262 8 8192 20 0 0 chrX 117422619 117423721 -45176209 + L1PA3 LINE L1 5061 6162 0 562 313 44 0 chrX 117424035 117424217 -45175713 - MIR SINE MIR -6 256 67 436 255 33 39 chrX 117424469 117424622 -45175308 + L1MEd LINE L1 89 240 -5965 796 280 64 21 chrX 117424703 117425174 -45174756 + L1MEd LINE L1 1288 1778 -4618 4160 200 75 39 chrX 117425672 117426687 -45173243 + L1MDa LINE L1 96 1266 -5274 1911 167 3 0 chrX 117426687 117426998 -45172932 + AluSx SINE Alu 1 312 0 4160 200 75 39 chrX 117426998 117427544 -45172386 + L1MDa LINE L1 1266 1791 -4749 2917 42 30 0 chrX 117427544 117427878 -45172052 - LTR14A LTR ERVK 0 344 1 797 69 0 43 chrX 117427881 117427997 -45171933 - HERVK14 LTR ERVK 0 5945 5835 382 175 0 18 chrX 117427997 117428072 -45171858 - MER41C LTR ERV1 -493 61 1 1530 70 0 20 chrX 117428072 117428271 -45171659 - HERVK14 LTR ERVK -186 5759 5565 4678 78 124 0 chrX 117428285 117428897 -45171033 - LTR12 LTR ERV1 0 688 1 796 253 43 47 chrX 117429081 117429338 -45170592 - pTR5 LTR ERV1 -1447 991 736 46698 48 3 2 chrX 117429342 117434863 -45165067 - HERVK14 LTR ERVK -421 5524 1 3090 41 0 0 chrX 117434863 117435207 -45164723 - LTR14A LTR ERVK 0 344 1 3802 174 59 41 chrX 117435211 117436150 -45163780 + L1MDa LINE L1 1788 2782 -3890 542 264 29 6 chrX 117436285 117436459 -45163471 + L1MDa LINE L1 2734 2911 -3629 2113 123 0 31 chrX 117436459 117436776 -45163154 + AluSx SINE Alu 1 307 -5 301 127 18 0 chrX 117436779 117436834 -45163096 + L1MB2 LINE L1 6114 6169 -2 1558 154 67 28 chrX 117437428 117437713 -45162217 + AluJb SINE Alu 1 296 -16 300 53 0 0 chrX 117437713 117437751 -45162179 + (GGA)n Simple_repeat Simple_repeat 1 38 0 872 189 39 17 chrX 117438218 117438398 -45161532 + MER45 DNA AcHobo 1 184 -1397 3459 117 0 16 chrX 117438398 117438531 -45161399 + L1PA14 LINE L1 5674 5808 -353 2507 99 8 79 chrX 117438531 117438923 -45161007 - THE1B LTR MaLR 0 364 1 13248 78 1 1 chrX 117438923 117440502 -45159428 - THE1B-int LTR MaLR 0 1580 1 2368 124 33 30 chrX 117440502 117440865 -45159065 - THE1B LTR MaLR 0 364 1 3459 117 0 16 chrX 117440865 117441216 -45158714 + L1PA14 LINE L1 5805 6152 -9 516 211 64 0 chrX 117441227 117441336 -45158594 + MER45 DNA AcHobo 1465 1580 -1 671 185 0 54 chrX 117441737 117441867 -45158063 + FLAM_A SINE Alu 20 142 0 274 246 85 73 chrX 117441890 117442162 -45157768 - L1ME4a LINE L1 -12 6109 5835 242 316 29 7 chrX 117442192 117442331 -45157599 - L1ME4a LINE L1 -1897 5911 5770 2264 143 67 3 chrX 117442333 117442705 -45157225 - LOR1b LTR ERV1 0 461 66 236 191 143 0 chrX 117442744 117442807 -45157123 - LOR1a LTR ERV1 -425 72 1 471 291 18 18 chrX 117442807 117442972 -45156958 - L1ME4a LINE L1 -352 5769 5605 1689 171 7 14 chrX 117443649 117443963 -45155967 - AluJo SINE Alu 0 312 1 592 249 118 35 chrX 117444336 117444649 -45155281 - L1ME4a LINE L1 -2215 5593 5255 384 294 78 51 chrX 117444651 117444944 -45154986 - L1ME4a LINE L1 -928 5218 4918 1642 150 71 7 chrX 117445343 117445623 -45154307 + AluJb SINE Alu 1 298 -14 451 316 78 85 chrX 117446411 117447033 -45152897 + L2 LINE L2 2657 3271 -1 717 189 63 21 chrX 117447332 117447523 -45152407 + Ricksha DNA DNA 2 200 -3046 * 1492 121 17 54 chrX 117447450 117447568 -45152362 - Ricksha DNA DNA -35 2819 2698 2051 134 3 0 chrX 117447568 117447860 -45152070 - AluJb SINE Alu -19 293 1 1492 121 17 54 chrX 117447860 117448038 -45151892 - Ricksha DNA DNA -156 2698 2534 6944 115 69 21 chrX 117448039 117448945 -45150985 - Ricksha DNA DNA -380 2866 2005 186 43 0 0 chrX 117448945 117448968 -45150962 + (TA)n Simple_repeat Simple_repeat 2 24 0 2391 92 0 0 chrX 117448968 117449263 -45150667 - AluSg SINE Alu -15 295 1 6944 115 69 21 chrX 117449263 117449459 -45150471 - Ricksha DNA DNA -1240 2006 1710 268 139 81 47 chrX 117449429 117449515 -45150415 - Ricksha DNA DNA -1103 151 63 * 303 234 16 16 chrX 117449557 117449621 -45150309 + L2 LINE L2 3206 3269 -3 464 271 94 100 chrX 117449640 117449969 -45149961 + L2 LINE L2 2945 3271 -1 305 300 13 92 chrX 117450029 117450256 -45149674 - L2 LINE L2 -793 2521 2313 21 36 0 0 chrX 117450359 117450387 -45149543 + AT_rich Low_complexity Low_complexity 1 28 0 347 292 93 41 chrX 117450480 117450572 -45149358 + L1ME LINE L1 4287 4373 -1773 1944 58 116 47 chrX 117450572 117450849 -45149081 + AluY SINE Alu 1 296 -15 347 292 93 41 chrX 117450849 117451210 -45148720 + L1ME LINE L1 4373 4769 -1377 272 174 0 0 chrX 117451299 117451358 -45148572 + L1P LINE L1 4968 5026 -1120 304 235 86 71 chrX 117451637 117451918 -45148012 + L1ME LINE L1 5327 5601 -520 2197 109 0 22 chrX 117451984 117452296 -45147634 - AluSx SINE Alu -7 305 1 2138 172 10 34 chrX 117452364 117452747 -45147183 + MLT1A2 LTR MaLR 1 374 0 1351 283 155 10 chrX 117452762 117453370 -45146560 + L2 LINE L2 133 828 -2486 681 201 47 0 chrX 117453375 117453524 -45146406 + HAL1 LINE L1 1503 1658 -849 1834 170 7 0 chrX 117453805 117454087 -45145843 + AluSx SINE Alu 1 284 -28 2045 108 19 22 chrX 117454180 117454496 -45145434 - L1MA8 LINE L1 0 6291 5977 327 279 29 66 chrX 117454821 117454957 -45144973 + L1ME3A LINE L1 5963 6093 -77 26 30 0 0 chrX 117454999 117455032 -45144898 + AT_rich Low_complexity Low_complexity 1 33 0 1614 161 47 18 chrX 117455207 117455486 -45144444 - AluJo SINE Alu -25 287 1 786 270 50 21 chrX 117455550 117455889 -45144041 + L1ME4a LINE L1 5254 5596 -782 242 241 101 25 chrX 117455991 117456070 -45143860 + L1ME4a LINE L1 5736 5820 -1988 1617 172 33 13 chrX 117456078 117456380 -45143550 + AluJo SINE Alu 5 312 0 180 0 0 0 chrX 117456390 117456410 -45143520 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 242 250 21 52 chrX 117456548 117456644 -45143286 + L1ME4a LINE L1 5934 6026 -95 1869 150 3 3 chrX 117456679 117456965 -45142965 + AluJb SINE Alu 3 288 -24 853 293 16 8 chrX 117457561 117457817 -45142113 + L2 LINE L2 2458 2715 -599 1868 167 0 0 chrX 117457817 117458099 -45141831 + AluJb SINE Alu 1 282 -30 297 0 0 0 chrX 117458171 117458204 -45141726 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 378 0 0 0 chrX 117458203 117458245 -45141685 + (CA)n Simple_repeat Simple_repeat 2 43 0 222 37 0 0 chrX 117458326 117458353 -45141577 + (TG)n Simple_repeat Simple_repeat 2 28 0 479 109 72 0 chrX 117458366 117458504 -45141426 + (TA)n Simple_repeat Simple_repeat 1 148 0 1444 285 51 17 chrX 117458513 117459087 -45140843 + L2 LINE L2 2723 3313 0 1994 167 54 22 chrX 117459096 117459617 -45140313 + MLT2A2 LTR ERVL 1 554 0 934 176 34 23 chrX 117459643 117459819 -45140111 - MER5B DNA MER1_type 0 178 1 454 341 92 31 chrX 117460215 117460661 -45139269 + L2 LINE L2 2234 2706 -608 2091 117 0 0 chrX 117460670 117460975 -45138955 + AluSx SINE Alu 1 305 0 198 0 0 0 chrX 117461011 117461033 -45138897 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 336 337 234 1 chrX 117461045 117461311 -45138619 + L2 LINE L2 2716 3036 -236 2400 52 0 14 chrX 117461338 117461669 -45138261 + AluY SINE Alu 1 327 0 600 89 0 0 chrX 117461670 117461749 -45138181 + AluSq/x SINE Alu 27 105 -207 446 153 14 0 chrX 117461760 117461832 -45138098 - MER5B DNA MER1_type -103 75 3 227 378 73 0 chrX 117461876 117461958 -45137972 + L2 LINE L2 3129 3216 -56 2266 96 3 3 chrX 117462958 117463251 -45136679 + AluSx SINE Alu 1 293 -19 200 35 35 0 chrX 117464143 117464172 -45135758 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2003 107 33 0 chrX 117464172 117464443 -45135487 - AluSx SINE Alu -32 280 1 373 250 78 78 chrX 117464808 117464876 -45135054 + MER5A DNA MER1_type 10 77 -112 2331 81 0 7 chrX 117464876 117465172 -45134758 + AluY SINE Alu 1 294 -17 373 250 78 78 chrX 117465172 117465283 -45134647 + MER5A DNA MER1_type 76 189 0 1272 108 0 0 chrX 117465440 117465607 -45134323 + AluSg/x SINE Alu 131 297 -15 2744 118 36 2 chrX 117467073 117467487 -45132443 + MSTA LTR MaLR 1 428 0 2201 108 3 22 chrX 117467942 117468257 -45131673 - AluSx SINE Alu -3 309 1 663 336 18 11 chrX 117468489 117468763 -45131167 + L1MEd LINE L1 440 715 -5404 535 250 6 35 chrX 117468768 117468940 -45130990 + L1MEd LINE L1 1064 1230 -4889 2102 121 26 23 chrX 117469568 117469873 -45130057 - AluSx SINE Alu -6 306 1 1984 119 0 41 chrX 117470504 117470847 -45129083 + L1MA7 LINE L1 5796 6124 -167 2570 71 23 3 chrX 117470847 117471199 -45128731 + L1PA13 LINE L1 5805 6163 0 405 243 37 15 chrX 117471231 117471367 -45128563 + HAL1 LINE L1 1227 1365 -1142 297 75 0 0 chrX 117471368 117471408 -45128522 + (CA)n Simple_repeat Simple_repeat 2 41 0 1020 95 12 18 chrX 117471447 117471615 -45128315 + L1MA7 LINE L1 6116 6282 -9 1902 197 20 12 chrX 117472071 117472551 -45127379 - MLT1E3 LTR MaLR 0 624 135 2224 74 27 20 chrX 117472558 117472717 -45127213 - AluSg SINE Alu -12 298 135 1301 18 54 18 chrX 117472717 117472906 -45127024 - L1PA5 LINE L1 0 6154 5979 2224 74 27 20 chrX 117472906 117473042 -45126888 - AluSg SINE Alu -175 135 1 976 130 19 6 chrX 117473042 117473204 -45126726 - MLT1E3 LTR MaLR -460 164 1 227 299 91 0 chrX 117473405 117473482 -45126448 + MIR3 SINE MIR 84 167 -41 906 258 54 17 chrX 117473493 117473733 -45126197 + MIR SINE MIR 13 261 -1 2400 82 0 16 chrX 117473802 117474117 -45125813 + AluSg SINE Alu 1 310 0 387 294 175 17 chrX 117474356 117474533 -45125397 + L3 LINE CR1 1296 1500 -77 498 135 76 19 chrX 117474533 117474660 -45125270 - MLT1A1 LTR MaLR -284 81 1 415 311 64 34 chrX 117475300 117475567 -45124363 - L1ME4a LINE L1 -12 6109 5835 344 240 70 70 chrX 117475898 117476069 -45123861 + MLT1K LTR MaLR 323 493 -95 759 117 0 0 chrX 117476367 117476470 -45123460 + AluJb SINE Alu 3 105 -207 1012 197 40 36 chrX 117476997 117477220 -45122710 - MER58A DNA MER1_type 0 224 1 2599 36 0 3 chrX 117477530 117477835 -45122095 + AluY SINE Alu 1 304 -7 200 257 0 150 chrX 117478080 117478132 -45121798 + L2 LINE L2 3179 3207 -106 2102 115 0 0 chrX 117478132 117478451 -45121479 - AluSx SINE Alu 0 312 6 200 257 0 150 chrX 117478451 117478511 -45121419 + L2 LINE L2 3207 3274 -39 1874 150 0 0 chrX 117478603 117478883 -45121047 - AluJb SINE Alu -30 282 3 758 163 36 138 chrX 117479194 117479470 -45120460 + MER46C DNA MER2_type 3 250 -88 199 216 39 20 chrX 117482646 117482697 -45117233 + MIR SINE MIR 201 252 -10 1428 171 125 14 chrX 117483707 117483988 -45115942 - AluJo SINE Alu 0 312 1 432 209 14 93 chrX 117484007 117484031 -45115899 - MIR SINE MIR -62 146 122 2232 73 28 0 chrX 117484031 117484317 -45115613 - AluSg SINE Alu -16 294 1 432 209 14 93 chrX 117484317 117484431 -45115499 - MIR SINE MIR -86 122 19 559 278 81 23 chrX 117484650 117484823 -45115107 - MIR3 SINE MIR -10 198 16 233 182 146 0 chrX 117484908 117484963 -45114967 + MIR3 SINE MIR 125 187 -21 550 244 94 12 chrX 117485270 117485430 -45114500 - MIR3 SINE MIR 0 208 36 2177 100 28 0 chrX 117486137 117486428 -45113502 + AluSx SINE Alu 1 299 -13 1909 139 0 57 chrX 117486607 117486789 -45113141 - AluJb SINE Alu 0 312 156 405 0 0 0 chrX 117486789 117486834 -45113096 + (TA)n Simple_repeat Simple_repeat 2 46 0 1909 139 0 57 chrX 117486834 117486982 -45112948 - AluJb SINE Alu -156 156 1 632 215 104 110 chrX 117487292 117487783 -45112147 - L1M1 LINE L1 -362 5800 5328 359 203 51 0 chrX 117487784 117487863 -45112067 + MIR SINE MIR 180 262 0 263 247 156 17 chrX 117487889 117488120 -45111810 - L1M4 LINE L1 -853 5293 5031 817 207 0 0 chrX 117488125 117488270 -45111660 + FRAM SINE Alu 1 145 -31 976 109 0 7 chrX 117488350 117488487 -45111443 - AluJb SINE Alu -176 136 1 699 270 61 60 chrX 117488512 117488879 -45111051 - L1M4 LINE L1 -1228 4918 4553 2285 88 16 7 chrX 117488879 117489184 -45110746 - AluSc SINE Alu -1 308 1 2221 97 10 0 chrX 117489191 117489481 -45110449 - AluSp SINE Alu -15 298 6 699 270 61 60 chrX 117489481 117489697 -45110233 - L1M4 LINE L1 -1598 4548 4323 2059 103 62 3 chrX 117489697 117489989 -45109941 - AluSx SINE Alu 0 312 4 699 270 61 60 chrX 117489989 117490047 -45109883 - L1M4 LINE L1 -1823 4323 4267 21 82 0 0 chrX 117490113 117490162 -45109768 + AT_rich Low_complexity Low_complexity 1 49 0 198 0 0 0 chrX 117490162 117490184 -45109746 + (TG)n Simple_repeat Simple_repeat 2 23 0 781 264 110 77 chrX 117490436 117490505 -45109425 - L1M4 LINE L1 -2918 3228 3163 1561 186 3 17 chrX 117490505 117490795 -45109135 - AluJb SINE Alu -26 286 1 781 264 110 77 chrX 117490795 117491297 -45108633 - L1M4 LINE L1 -2983 3163 2638 250 103 0 69 chrX 117492774 117492832 -45107098 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 2246 113 7 0 chrX 117492834 117493143 -45106787 - AluSx SINE Alu -1 311 1 400 195 39 47 chrX 117493679 117493807 -45106123 + L1MC5 LINE L1 7404 7530 -431 362 272 28 46 chrX 117493903 117494119 -45105811 + L1ME3A LINE L1 5961 6170 0 731 138 0 17 chrX 117494192 117494308 -45105622 - AluJb SINE Alu -195 117 4 1755 193 0 13 chrX 117495950 117496251 -45103679 + AluJo SINE Alu 1 297 -15 529 56 0 0 chrX 117496436 117496507 -45103423 - L1PA7 LINE L1 -4 6150 6080 2268 92 38 0 chrX 117498652 117498945 -45100985 - AluSc SINE Alu -5 304 1 21 0 0 0 chrX 117499187 117499208 -45100722 + AT_rich Low_complexity Low_complexity 1 21 0 1225 209 46 42 chrX 117499415 117499698 -45100232 + AluJo SINE Alu 3 286 -26 1318 102 0 0 chrX 117499705 117499872 -45100058 + AluY SINE Alu 1 167 -144 1718 176 30 7 chrX 117500242 117500538 -45099392 + AluSx SINE Alu 1 303 -9 2040 107 20 24 chrX 117500604 117500902 -45099028 + AluSx SINE Alu 1 297 -15 1443 176 23 60 chrX 117503273 117503575 -45096355 + AluJb SINE Alu 1 291 -21 517 146 0 4 chrX 117504602 117504738 -45095192 - MER53 DNA DNA 0 189 1 2220 90 3 35 chrX 117504937 117505249 -45094681 + AluSq SINE Alu 12 313 0 392 350 62 12 chrX 117506277 117506437 -45093493 + L2 LINE L2 3104 3271 -1 353 215 38 13 chrX 117506434 117506513 -45093417 - MIR3 SINE MIR -30 178 98 * 1340 291 218 8 chrX 117506552 117507170 -45092760 - L3 LINE CR1 -77 1500 753 1139 145 0 0 chrX 117507183 117507349 -45092581 + AluJb SINE Alu 147 312 0 497 319 0 0 chrX 117507356 117507472 -45092458 - L3 LINE CR1 -831 746 631 425 355 90 20 chrX 117507484 117507839 -45092091 - L3 LINE CR1 -1133 444 65 736 219 83 94 chrX 117508242 117508624 -45091306 + L1MC5 LINE L1 7385 7761 -200 2157 67 42 3 chrX 117508624 117508909 -45091021 + AluY SINE Alu 1 296 -15 736 219 83 94 chrX 117508909 117509056 -45090874 + L1MC5 LINE L1 7761 7908 -53 303 203 125 0 chrX 117509099 117509163 -45090767 - MIR SINE MIR -118 90 19 497 242 39 39 chrX 117509418 117509546 -45090384 + L2 LINE L2 3186 3313 0 294 282 0 0 chrX 117509559 117509630 -45090300 + MIR3 SINE MIR 117 187 -21 198 0 0 0 chrX 117510268 117510290 -45089640 + (TA)n Simple_repeat Simple_repeat 1 22 0 2188 111 3 35 chrX 117510521 117510836 -45089094 - AluSx SINE Alu -7 305 1 2461 68 0 0 chrX 117510972 117511280 -45088650 - AluY SINE Alu -3 308 1 2404 71 7 0 chrX 117511280 117511576 -45088354 - AluY SINE Alu -13 298 1 1429 142 31 50 chrX 117511887 117512060 -45087870 + L1MA7 LINE L1 5067 5233 -913 2068 139 65 50 chrX 117512060 117512401 -45087529 + MSTB LTR MaLR 3 353 -73 2083 121 3 3 chrX 117512401 117512691 -45087239 - AluSc SINE Alu -19 290 1 2068 139 65 50 chrX 117512691 117512767 -45087163 + MSTB LTR MaLR 353 426 0 1429 142 31 50 chrX 117512767 117512910 -45087020 + L1MA7 LINE L1 5233 5377 -769 * 2104 139 44 24 chrX 117512909 117513319 -45086611 + L1MA7 LINE L1 5789 6206 -85 28 0 0 0 chrX 117513444 117513472 -45086458 + AT_rich Low_complexity Low_complexity 1 28 0 1575 167 16 22 chrX 117713584 117713901 -44886029 - THE1C LTR MaLR -57 318 4 4278 139 68 8 chrX 117713904 117714630 -44885300 - THE1C-int LTR MaLR 0 1580 812 * 6749 239 53 15 chrX 117714625 117715825 -44884105 - L1M4 LINE L1 -1169 4977 3823 234 91 0 0 chrX 117715825 117715858 -44884072 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 6749 239 53 15 chrX 117715858 117716948 -44882982 - L1M4 LINE L1 -2323 3823 2601 3290 204 41 6 chrX 117716948 117717613 -44882317 + MER76 LTR ERV 1 688 0 283 247 86 32 chrX 117719047 117719084 -44880846 + MIR3 SINE MIR 79 113 -95 2115 125 17 0 chrX 117719084 117719437 -44880493 - AluSx SINE Alu 0 312 1 283 247 86 32 chrX 117719437 117719492 -44880438 + MIR3 SINE MIR 113 176 -32 312 48 0 0 chrX 117719592 117719634 -44880296 + (CA)n Simple_repeat Simple_repeat 1 42 0 523 134 21 10 chrX 117721073 117721170 -44878760 + MER4A LTR ERV1 1 98 -566 1726 123 158 75 chrX 117721170 117721543 -44878387 + MER4A LTR ERV1 261 664 0 309 294 68 34 chrX 117721571 117721717 -44878213 - MIR3 SINE MIR -28 180 30 2599 112 6 8 chrX 117721993 117722358 -44877572 + THE1B LTR MaLR 1 364 0 11122 100 28 3 chrX 117722358 117723899 -44876031 + THE1B-int LTR MaLR 1 1580 0 2628 105 0 16 chrX 117723899 117724269 -44875661 + THE1B LTR MaLR 1 364 0 297 324 32 24 chrX 117724816 117725063 -44874867 + HERVL40 LTR ERVL 3699 3947 -1583 2062 148 26 0 chrX 117725402 117725706 -44874224 - AluSx SINE Alu 0 312 1 2974 223 53 42 chrX 117725715 117726597 -44873333 + HERVL40 LTR ERVL 1987 2878 -159 2225 213 42 51 chrX 117726835 117727107 -44872823 + MER76 LTR ERV 2 275 -413 1545 167 82 74 chrX 117727107 117727568 -44872362 + MLT1C LTR MaLR 1 465 -2 2225 213 42 51 chrX 117727568 117727920 -44872010 + MER76 LTR ERV 275 620 -68 793 172 40 20 chrX 117727911 117728171 -44871759 - MSTD LTR MaLR -71 325 3 * 547 211 17 0 chrX 117728171 117728342 -44871588 + L1MDa LINE L1 2522 2735 -3896 317 179 36 0 chrX 117728379 117728435 -44871495 - MER76 LTR ERV -2 686 629 1274 208 24 0 chrX 117728435 117728723 -44871207 - L1MDb LINE L1 -5357 1186 892 442 257 44 97 chrX 117728815 117729157 -44870773 - L1MDb LINE L1 -6200 340 17 2218 214 55 24 chrX 117729169 117729671 -44870259 - L1ME1 LINE L1 -229 6006 5521 2441 112 78 2 chrX 117729671 117730092 -44869838 - L1MA5A LINE L1 -4 6293 5841 2218 214 55 24 chrX 117730092 117730547 -44869383 - L1ME1 LINE L1 -714 5521 5020 338 127 0 16 chrX 117730552 117730615 -44869315 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 362 235 29 0 chrX 117730699 117730801 -44869129 - L1ME1 LINE L1 -4704 1692 1588 4681 231 61 9 chrX 117730849 117731072 -44868858 + L1M4 LINE L1 3575 3785 -2361 2066 189 19 24 chrX 117731072 117731485 -44868445 - LTR57 LTR ERVL 0 411 1 4681 231 61 9 chrX 117731485 117732743 -44867187 + L1M4 LINE L1 3785 5132 -1014 23 33 0 0 chrX 117733353 117733383 -44866547 + AT_rich Low_complexity Low_complexity 1 30 0 1738 199 0 7 chrX 117733484 117733790 -44866140 - AluJb SINE Alu -6 306 3 332 291 94 8 chrX 117734514 117734631 -44865299 + L2 LINE L2 3179 3305 -8 962 184 34 6 chrX 117734730 117734909 -44865021 - MER5A DNA MER1_type 0 189 6 221 257 100 29 chrX 117735125 117735195 -44864735 + MER5A DNA MER1_type 92 166 -23 * 303 198 86 37 chrX 117735142 117735223 -44864707 - MER5A DNA MER1_type -98 91 7 209 339 0 0 chrX 117735322 117735384 -44864546 + MIR SINE MIR 82 143 -65 321 303 82 0 chrX 117735966 117736088 -44863842 + L3 LINE CR1 664 795 -782 207 269 135 58 chrX 117736128 117736284 -44863646 + L3 LINE CR1 1191 1358 -219 1298 178 97 46 chrX 117736778 117737149 -44862781 - MLT1B LTR MaLR 0 390 1 240 283 62 53 chrX 117737418 117737531 -44862399 + MIR3 SINE MIR 89 202 -6 202 189 0 0 chrX 117740855 117740892 -44859038 + C-rich Low_complexity Low_complexity 1 37 0 219 167 0 62 chrX 117741858 117741906 -44858024 - L2 LINE L2 -6 3307 3263 5419 244 68 136 chrX 117742220 117742725 -44857205 + L2 LINE L2 19 557 -2757 2486 55 0 7 chrX 117742725 117743034 -44856896 + AluY SINE Alu 1 307 -4 5419 244 68 136 chrX 117743034 117743838 -44856092 + L2 LINE L2 557 1414 -1900 2043 224 51 51 chrX 117743838 117744391 -44855539 - MLT2B3 LTR ERVL 0 554 2 5419 244 68 136 chrX 117744391 117746174 -44853756 + L2 LINE L2 1414 2902 -412 17451 106 15 11 chrX 117746174 117750030 -44849900 + L1PA8A LINE L1 2044 6043 -88 364 303 272 3 chrX 117750035 117750322 -44849608 + L2 LINE L2 2946 3309 -4 611 305 58 49 chrX 117750343 117750823 -44849107 - L1ME2 LINE L1 -239 5925 5436 2210 103 20 0 chrX 117750823 117751124 -44848806 - AluSx SINE Alu -5 307 1 611 305 58 49 chrX 117751124 117751299 -44848631 - L1ME2 LINE L1 -728 5436 5264 1977 242 73 5 chrX 117751521 117752095 -44847835 - L1ME3A LINE L1 -5 6165 5553 3208 203 19 36 chrX 117752135 117753498 -44846432 - L1MB8 LINE L1 0 6178 4851 * 6571 183 102 85 chrX 117753488 117755856 -44844074 + L1MCa LINE L1 6 2412 -4014 17850 173 55 13 chrX 117755911 117758869 -44841061 + L1M1 LINE L1 13 2847 -4718 2264 59 17 24 chrX 117758869 117759157 -44840773 + AluY SINE Alu 1 286 -25 17850 173 55 13 chrX 117759157 117759269 -44840661 + L1M1 LINE L1 2847 2953 -4612 1964 90 0 0 chrX 117759269 117759536 -44840394 + L1PA8 LINE L1 5906 6172 0 2277 88 3 19 chrX 117759540 117759875 -44840055 + AluSq SINE Alu 1 313 0 17850 173 55 13 chrX 117759875 117762439 -44837491 + L1M1 LINE L1 2955 5881 -1684 479 149 43 0 chrX 117762437 117762531 -44837399 - L1M1 LINE L1 -4618 2947 2850 * 5378 114 111 43 chrX 117762520 117763539 -44836391 - L1M1 LINE L1 -4982 2583 1496 549 155 35 26 chrX 117763543 117763659 -44836271 - L1M1 LINE L1 -7433 132 16 188 0 74 0 chrX 117763681 117763708 -44836222 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chrX 117763733 117763762 -44836168 + AT_rich Low_complexity Low_complexity 1 29 0 200 304 36 0 chrX 117763820 117763876 -44836054 + L2 LINE L2 3233 3290 -23 1819 165 25 70 chrX 117764412 117764811 -44835119 - MLT2C1 LTR ERVL 0 397 17 332 270 0 0 chrX 117766357 117766431 -44833499 - MER5B DNA MER1_type 0 178 105 380 259 109 65 chrX 117766432 117766589 -44833341 + MER63A DNA MER1_type 1 170 -1518 1613 11 0 0 chrX 117766589 117766771 -44833159 - L1PA2 LINE L1 -3 6152 5971 380 259 109 65 chrX 117766771 117766814 -44833116 + MER63A DNA MER1_type 170 210 0 705 227 81 6 chrX 117766917 117767089 -44832841 + MIR SINE MIR 47 231 -31 29 0 0 0 chrX 117767586 117767615 -44832315 + AT_rich Low_complexity Low_complexity 1 29 0 567 196 90 11 chrX 117768243 117768432 -44831498 - L1M4 LINE L1 -1299 4847 4644 6711 65 0 0 chrX 117768438 117769470 -44830460 - L1PA6 LINE L1 -7 6147 5105 252 188 0 0 chrX 117770615 117770679 -44829251 + A-rich Low_complexity Low_complexity 1 64 0 252 352 38 19 chrX 117772699 117772804 -44827126 + L2 LINE L2 3156 3262 -10 27 0 0 0 chrX 117772888 117772915 -44827015 + AT_rich Low_complexity Low_complexity 1 27 0 200 97 32 0 chrX 117774704 117774735 -44825195 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 528 252 82 77 chrX 117775849 117775935 -44823995 - L1MEc LINE L1 -3393 2822 2738 2506 48 0 22 chrX 117775935 117776250 -44823680 - AluY SINE Alu -3 308 1 528 252 82 77 chrX 117776250 117776774 -44823156 - L1MEc LINE L1 -3477 2738 2209 38 0 0 0 chrX 117776856 117776894 -44823036 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chrX 117777069 117777102 -44822828 + AT_rich Low_complexity Low_complexity 1 33 0 1432 78 15 5 chrX 117777116 117777321 -44822609 - L1PA10 LINE L1 -3 6165 5959 576 63 0 0 chrX 117777321 117777400 -44822530 + L1PA10 LINE L1 5874 5952 -216 332 319 92 25 chrX 117777446 117777609 -44822321 - L1MEc LINE L1 -4576 1820 1647 2257 120 0 0 chrX 117777617 117777918 -44822012 + AluSq SINE Alu 1 301 -12 1251 136 34 15 chrX 117777927 117778133 -44821797 + AluJb SINE Alu 87 296 -16 3565 191 92 25 chrX 117778160 117778955 -44820975 - MER21B LTR ERV1 -15 848 1 719 341 35 45 chrX 117778959 117779472 -44820458 - L1MEc LINE L1 -4750 1646 1139 344 306 89 39 chrX 117780804 117781111 -44818819 + L1ME LINE L1 5430 5736 -385 2152 84 49 0 chrX 117781160 117781447 -44818483 - AluSp SINE Alu -12 301 1 192 163 0 0 chrX 117781855 117781898 -44818032 + CT-rich Low_complexity Low_complexity 1 43 0 1112 208 57 44 chrX 117781982 117782348 -44817582 - L1MC5 LINE L1 -629 7332 6962 1302 250 15 24 chrX 117782400 117782728 -44817202 - L2 LINE L2 -555 2759 2435 1519 177 32 11 chrX 117782990 117783272 -44816658 + AluJo SINE Alu 1 288 -24 625 110 48 1 chrX 117783272 117783942 -44815988 + (TA)n Simple_repeat Simple_repeat 1 700 0 1227 198 20 104 chrX 117784281 117784782 -44815148 + L1MB7 LINE L1 2342 2800 -3346 229 247 79 22 chrX 117784915 117785004 -44814926 - L2 LINE L2 -613 2701 2608 207 0 0 0 chrX 117786468 117786491 -44813439 + (A)n Simple_repeat Simple_repeat 1 23 0 208 174 22 0 chrX 117788202 117788248 -44811682 + CT-rich Low_complexity Low_complexity 1 47 0 287 150 17 0 chrX 117789650 117789710 -44810220 + G-rich Low_complexity Low_complexity 5 65 0 204 298 16 33 chrX 117791299 117791420 -44808510 + CT-rich Low_complexity Low_complexity 1 119 0 320 277 168 7 chrX 117791492 117791647 -44808283 + MIR SINE MIR 17 196 -66 3119 195 27 35 chrX 117792824 117794024 -44805906 + L1MB7 LINE L1 4211 5496 -688 1855 98 46 0 chrX 117794024 117794299 -44805631 + L1MA5A LINE L1 5995 6292 -5 3119 195 27 35 chrX 117794299 117794937 -44804993 + L1MB7 LINE L1 5496 6138 -46 273 299 30 0 chrX 117797029 117797096 -44802834 - MIR SINE MIR -165 97 29 40599 50 2 2 chrX 117798334 117804482 -44795448 + L1PA3 LINE L1 11 6155 0 21 0 0 0 chrX 117804542 117804563 -44795367 + AT_rich Low_complexity Low_complexity 1 21 0 1834 184 21 16 chrX 117804592 117804972 -44794958 - LTR52 LTR ERVL -39 382 1 225 0 0 0 chrX 117805246 117805271 -44794659 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 1127 112 11 0 chrX 117805316 117805389 -44794541 + (CATATA)n Simple_repeat Simple_repeat 1 253 0 1127 112 11 0 chrX 117805389 117805567 -44794363 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 205 152 0 0 chrX 117805663 117805696 -44794234 + L2 LINE L2 3269 3301 -12 227 244 33 0 chrX 117807608 117807698 -44792232 + (TA)n Simple_repeat Simple_repeat 1 93 0 323 65 0 0 chrX 117807869 117807915 -44792015 - MADE1 DNA Mariner 0 80 35 2195 109 0 0 chrX 117808123 117808416 -44791514 + AluSx SINE Alu 1 293 -19 1082 211 63 0 chrX 117808512 117808782 -44791148 - L1ME1 LINE L1 -288 6158 5872 23 0 0 0 chrX 117809295 117809318 -44790612 + AT_rich Low_complexity Low_complexity 1 23 0 1053 215 104 5 chrX 117809335 117809738 -44790192 - L1P5 LINE L1 -530 5621 5176 1014 186 21 8 chrX 117809873 117810115 -44789815 - L1ME1 LINE L1 -960 5466 5222 7729 20 1 0 chrX 117810635 117812094 -44787836 - L1PA2 LINE L1 -6 6149 4690 5000 21 0 0 chrX 117812095 117812676 -44787254 + L1PA2 LINE L1 4114 4694 -1452 1457 229 57 46 chrX 117812671 117813107 -44786823 - L1ME1 LINE L1 -1189 5237 4797 * 822 190 22 22 chrX 117813112 117813291 -44786639 - L1ME1 LINE L1 -6229 197 19 514 285 21 60 chrX 117813309 117813590 -44786340 - L1MEc LINE L1 -4396 2167 1898 2393 132 8 3 chrX 117813731 117814110 -44785820 - L1MA4 LINE L1 -557 5743 5363 2609 173 28 6 chrX 117814110 117814645 -44785285 + L1MA4 LINE L1 5745 6294 -6 1402 265 36 21 chrX 117814685 117814897 -44785033 - L1MEc LINE L1 -4550 1834 1627 477 66 0 121 chrX 117814897 117814988 -44784942 + MADE1 DNA Mariner 1 80 0 1402 265 36 21 chrX 117814988 117815295 -44784635 - L1MEc LINE L1 -4757 1627 1307 4593 191 41 14 chrX 117815296 117816476 -44783454 - L1MB8 LINE L1 -2 6456 5206 2208 98 0 0 chrX 117816476 117816761 -44783169 - AluSx SINE Alu -27 285 1 4593 191 41 14 chrX 117816761 117817440 -44782490 - L1MB8 LINE L1 -1252 5206 4547 185 276 17 0 chrX 117817640 117817698 -44782232 - L2 LINE L2 -1 3271 3213 22 35 0 0 chrX 117820267 117820296 -44779634 + AT_rich Low_complexity Low_complexity 1 29 0 242 228 0 0 chrX 117820305 117820362 -44779568 + (TA)n Simple_repeat Simple_repeat 2 58 0 252 143 0 0 chrX 117820440 117820482 -44779448 + (CATA)n Simple_repeat Simple_repeat 1 42 0 6430 80 17 2 chrX 117821347 117823038 -44776892 + L1PA10 LINE L1 4451 6168 0 2644 141 37 19 chrX 117829794 117830520 -44769410 - L1M3 LINE L1 -419 5761 5022 4981 148 10 47 chrX 117830524 117831507 -44768423 - L1MA4A LINE L1 -89 6214 5268 1534 145 52 0 chrX 117831507 117831756 -44768174 + MER7A DNA MER2_type 2 261 -85 438 222 0 0 chrX 117831827 117831908 -44768022 + MER7A DNA MER2_type 255 335 -1 7046 232 128 18 chrX 117831908 117834418 -44765512 - L1MA4A LINE L1 -875 5271 2485 228 333 110 41 chrX 117834453 117834699 -44765231 + L2 LINE L2 1618 1880 -1434 6071 121 6 15 chrX 117834701 117835591 -44764339 + THE1C-int LTR MaLR 699 1580 0 2021 90 69 74 chrX 117835591 117835968 -44763962 + THE1C LTR MaLR 1 375 0 2086 244 70 100 chrX 117835971 117836684 -44763246 - L1MB8 LINE L1 -2354 4072 3339 2329 101 0 19 chrX 117836684 117837002 -44762928 - AluSx SINE Alu 0 312 1 2086 244 70 100 chrX 117837002 117838167 -44761763 - L1MB8 LINE L1 -3087 3339 2253 1049 189 13 60 chrX 117838167 117838400 -44761530 + MER46A DNA MER2_type 1 222 -14 1537 191 123 12 chrX 117838402 117838671 -44761259 - L1MCa LINE L1 -4182 2382 2048 2625 141 30 16 chrX 117838671 117839097 -44760833 + Tigger2a DNA MER2_type 3 434 0 1537 191 123 12 chrX 117839097 117839251 -44760679 - L1MCa LINE L1 -4516 2048 1912 43 81 0 0 chrX 117839844 117839943 -44759987 + AT_rich Low_complexity Low_complexity 1 99 0 1747 20 0 0 chrX 117840137 117840339 -44759591 - L1PA2 LINE L1 -4 6151 5950 7293 19 1 0 chrX 117840339 117841766 -44758164 + L1PA2 LINE L1 4527 5954 -201 2160 187 48 79 chrX 117841875 117842217 -44757713 - L1MCa LINE L1 -4737 1827 1517 1670 200 90 6 chrX 117842217 117842582 -44757348 + MSTD LTR MaLR 1 396 0 2160 187 48 79 chrX 117842582 117842950 -44756980 - L1MCa LINE L1 -5047 1517 1139 * 18929 211 25 22 chrX 117842944 117850067 -44749863 - L1PA15 LINE L1 0 7603 430 2408 65 0 7 chrX 117850067 117850359 -44749571 - AluY SINE Alu -21 290 1 18929 211 25 22 chrX 117850359 117850791 -44749139 - L1PA15 LINE L1 -7173 430 1 2734 203 66 128 chrX 117850794 117852041 -44747889 - L1MCa LINE L1 -4876 1169 1 1644 233 28 0 chrX 117852253 117852682 -44747248 - L1M4 LINE L1 -1115 5031 4591 517 168 0 56 chrX 117852780 117852887 -44747043 - MLT1D LTR MaLR -400 105 5 1996 208 71 29 chrX 117853725 117854202 -44745728 - MLT1D LTR MaLR -8 497 1 1927 173 25 48 chrX 117854562 117854961 -44744969 + MLT1B LTR MaLR 1 390 0 3259 143 22 5 chrX 117855184 117856034 -44743896 + L1MA7 LINE L1 4813 5673 -618 381 75 0 0 chrX 117856035 117856088 -44743842 + (TA)n Simple_repeat Simple_repeat 2 54 0 180 0 0 0 chrX 117856147 117856167 -44743763 + (TA)n Simple_repeat Simple_repeat 2 21 0 2206 148 43 13 chrX 117856167 117856560 -44743370 + L1MA7 LINE L1 5887 6291 0 1571 263 77 17 chrX 117856961 117857506 -44742424 - L2 LINE L2 -9 3304 2725 231 96 0 58 chrX 117857506 117857558 -44742372 + LTR66 LTR ERVL 391 439 -171 361 278 0 0 chrX 117857584 117857674 -44742256 + L1MC4 LINE L1 6614 6703 -1339 1734 158 4 18 chrX 117857725 117858004 -44741926 - AluSx SINE Alu -37 275 1 1739 216 77 184 chrX 117858005 117858515 -44741415 - L2 LINE L2 -600 2714 2151 7410 172 40 7 chrX 117858515 117860549 -44739381 + L1PA14 LINE L1 4082 6160 -1 1739 216 77 184 chrX 117860549 117860752 -44739178 - L2 LINE L2 -1163 2151 1928 610 211 23 16 chrX 117860752 117860880 -44739050 - MER94 DNA DNA -5 129 1 1739 216 77 184 chrX 117860880 117861246 -44738684 - L2 LINE L2 -1386 1928 1636 6230 172 22 19 chrX 117861252 117862455 -44737475 - L1MC1 LINE L1 -8 6605 5393 2103 105 10 10 chrX 117862455 117862768 -44737162 - L1MA4A LINE L1 0 6303 5991 6230 172 22 19 chrX 117862768 117863156 -44736774 - L1MC1 LINE L1 -1220 5393 5008 1811 166 75 3 chrX 117863150 117863481 -44736449 - L1MC1 LINE L1 -6051 375 21 * 1300 257 15 6 chrX 117863482 117863809 -44736121 - L2 LINE L2 -1669 1645 1316 677 163 44 0 chrX 117863812 117863947 -44735983 - L1MB4 LINE L1 0 6180 6040 2212 184 38 12 chrX 117863947 117864370 -44735560 + MLT1C LTR MaLR 3 436 -31 3393 187 45 46 chrX 117864383 117865280 -44734650 - L1MB5 LINE L1 -106 6068 5171 7501 42 22 35 chrX 117865280 117866354 -44733576 - L1PA7 LINE L1 -3 6151 5091 3393 187 45 46 chrX 117866354 117866478 -44733452 - L1MB5 LINE L1 -1003 5171 5045 2089 138 26 55 chrX 117866478 117866861 -44733069 - THE1C LTR MaLR -2 373 2 3393 187 45 46 chrX 117866861 117866964 -44732966 - L1MB5 LINE L1 -1129 5045 4943 5359 209 27 7 chrX 117867112 117869027 -44730903 - L1MC1 LINE L1 -423 5910 3957 2711 114 6 0 chrX 117869125 117869476 -44730454 - THE1A LTR MaLR -2 353 1 12494 93 10 0 chrX 117869476 117871041 -44728889 - THE1A-int LTR MaLR 0 1580 1 3052 73 0 0 chrX 117871041 117871396 -44728534 - THE1A LTR MaLR 0 355 1 294 278 74 9 chrX 117871404 117871512 -44728418 + MLT1J1 LTR MaLR 121 235 -211 1237 151 41 28 chrX 117873503 117873810 -44726120 - LTR45B LTR ERV1 -131 358 4 1456 256 67 17 chrX 117873811 117874272 -44725658 - MLT1D LTR MaLR -21 484 1 25 31 0 0 chrX 117883227 117883259 -44716671 + AT_rich Low_complexity Low_complexity 1 32 0 2500 228 58 33 chrX 117885250 117885882 -44714048 - MER21B LTR ERV1 -48 815 168 22 35 0 0 chrX 117886458 117886487 -44713443 + AT_rich Low_complexity Low_complexity 1 29 0 1139 271 35 22 chrX 117886532 117886898 -44713032 - L1MC4a LINE L1 -1966 5842 5472 * 2646 211 32 24 chrX 117886879 117887595 -44712335 - L1MC4a LINE L1 -2799 3347 2626 423 0 0 0 chrX 117887600 117887647 -44712283 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 10038 165 19 26 chrX 117887648 117890600 -44709330 - L1PA10 LINE L1 -19 6464 3492 2003 50 12 8 chrX 117890600 117890842 -44709088 - AluY SINE Alu -63 248 6 10038 165 19 26 chrX 117890842 117894358 -44705572 - L1PA10 LINE L1 -2991 3492 10 4695 8 0 0 chrX 117894903 117895398 -44704532 - L1PA2 LINE L1 0 6155 5661 3307 8 0 0 chrX 117895398 117895764 -44704166 + L1PA2 LINE L1 5292 5657 -498 338 250 94 80 chrX 117896240 117896464 -44703466 - L1MC/D LINE L1 -2560 5546 5320 3185 177 13 11 chrX 117896669 117897223 -44702707 - MER68 LTR ERV1 -2 560 6 18885 120 27 11 chrX 117898163 117900197 -44699733 - L1PA10 LINE L1 -2 6166 4167 2454 74 3 0 chrX 117900197 117900496 -44699434 + AluY SINE Alu 1 300 -11 18885 120 27 11 chrX 117900496 117900606 -44699324 - L1PA10 LINE L1 -2001 4167 4060 2291 116 0 0 chrX 117900606 117900917 -44699013 - AluSx SINE Alu -1 311 1 18885 120 27 11 chrX 117900917 117901694 -44698236 - L1PA10 LINE L1 -2108 4060 3297 369 0 0 0 chrX 117901694 117901735 -44698195 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 18885 120 27 11 chrX 117901735 117902740 -44697190 - L1PA10 LINE L1 -2871 3297 2172 896 93 0 0 chrX 117902740 117902847 -44697083 - U6 snRNA snRNA 0 107 1 2893 236 40 20 chrX 117903116 117903814 -44696116 - L1MC/D LINE L1 -1860 4350 3625 2351 90 7 3 chrX 117903814 117904113 -44695817 - AluSx SINE Alu -12 300 1 2893 236 40 20 chrX 117904113 117904377 -44695553 - L1MC/D LINE L1 -2585 3625 3368 351 230 17 14 chrX 117904460 117904518 -44695412 - L1MA9 LINE L1 -117 6217 6161 231 61 0 0 chrX 117904518 117904551 -44695379 + (TG)n Simple_repeat Simple_repeat 2 34 0 351 230 17 14 chrX 117904551 117904638 -44695292 - L1MA9 LINE L1 -173 6161 6066 1893 214 33 50 chrX 117904649 117905167 -44694763 - MER21B LTR ERV1 -1 862 354 1659 200 40 10 chrX 117905170 117905689 -44694241 - L1 LINE L1 -2806 3340 2806 2872 260 59 9 chrX 117905710 117906100 -44693830 - L1MC/D LINE L1 -4172 2039 1670 207 0 0 0 chrX 117906100 117906123 -44693807 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2872 260 59 9 chrX 117906123 117907431 -44692499 - L1MC/D LINE L1 -4541 1670 470 727 163 26 137 chrX 117907440 117907640 -44692290 - L1M3c LINE L1 -5890 251 87 2767 151 9 0 chrX 117907640 117908065 -44691865 - MSTB1 LTR MaLR 0 432 4 727 163 26 137 chrX 117908065 117908134 -44691796 - L1M3c LINE L1 -6054 87 12 328 242 16 8 chrX 117908192 117908320 -44691610 - L1M4 LINE L1 -2887 3757 3629 266 257 0 0 chrX 117908311 117908381 -44691549 - L1MA5 LINE L1 -201 6099 6030 * 1870 256 48 48 chrX 117908377 117909247 -44690683 - L1M4 LINE L1 -5218 1324 455 239 0 0 31 chrX 117909263 117909295 -44690635 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 327 283 132 74 chrX 117909337 117909662 -44690268 - L1M4 LINE L1 -6029 617 274 * 469 365 56 16 chrX 117909656 117909905 -44690025 + L1MEd LINE L1 544 802 -5403 41430 45 2 0 chrX 117909930 117916057 -44683873 - L1PA4 LINE L1 -13 6142 7 503 313 43 8 chrX 117916379 117916731 -44683199 + L1MEd LINE L1 1253 1616 -4780 246 249 74 46 chrX 117916750 117916966 -44682964 + L1MC4 LINE L1 7311 7637 -405 413 267 114 80 chrX 117916995 117917405 -44682525 + L1MC5 LINE L1 7604 8001 -26 221 347 14 0 chrX 117917482 117917554 -44682376 - L2 LINE L2 -22 3250 3178 6277 219 72 25 chrX 117917855 117919743 -44680187 + L1M4c LINE L1 29 2099 -4285 276 238 62 0 chrX 117919763 117919835 -44680095 + L1MB8 LINE L1 1 456 -5815 410 112 0 6 chrX 117919938 117920006 -44679924 - L1MC/D LINE L1 -625 5555 5491 277 144 76 17 chrX 117920053 117920171 -44679759 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 337 156 13 13 chrX 117920189 117920266 -44679664 - L1MC/D LINE L1 -696 5478 5402 3600 214 55 10 chrX 117920371 117921994 -44677936 + L1MB8 LINE L1 4410 6106 -276 4208 176 55 11 chrX 117921995 117922871 -44677059 - MER54A LTR ERVL 0 901 1 929 228 46 4 chrX 117922871 117923134 -44676796 + L1MB8 LINE L1 6103 6376 -6 2325 80 0 3 chrX 117923151 117923476 -44676454 + AluY SINE Alu 1 324 0 21 0 0 0 chrX 117923480 117923501 -44676429 + AT_rich Low_complexity Low_complexity 1 21 0 321 311 80 42 chrX 117923611 117923696 -44676234 + L1MC/D LINE L1 5309 5389 -2419 737 303 71 41 chrX 117923696 117924011 -44675919 + MLT1I LTR MaLR 3 334 -75 1729 168 0 0 chrX 117924011 117924273 -44675657 - AluSx SINE Alu -21 291 30 737 303 71 41 chrX 117924273 117924350 -44675580 + MLT1I LTR MaLR 334 407 -2 321 311 80 42 chrX 117924350 117924476 -44675454 + L1MC/D LINE L1 5389 5528 -2280 627 164 0 0 chrX 117924488 117924610 -44675320 - L1MA8 LINE L1 0 6291 6170 233 272 12 0 chrX 117924624 117924705 -44675225 - L1ME LINE L1 -351 5770 5689 3939 200 112 125 chrX 117925257 117927413 -44672517 + L1MC/D LINE L1 12 2139 -4287 3127 235 33 26 chrX 117927414 117927978 -44671952 + L1MC/D LINE L1 3186 3762 -2664 3420 65 9 9 chrX 117927978 117928427 -44671503 + L1PA10 LINE L1 5719 6167 -1 3127 235 33 26 chrX 117928427 117928927 -44671003 + L1MC/D LINE L1 3762 4257 -2169 745 191 0 126 chrX 117928929 117929175 -44670755 + MLT1A2 LTR MaLR 1 215 -159 861 174 27 0 chrX 117929233 117929382 -44670548 + MLT1A2 LTR MaLR 222 374 0 961 230 18 0 chrX 117929400 117929626 -44670304 + L1MC/D LINE L1 4275 4504 -1922 918 81 48 8 chrX 117929654 117929778 -44670152 - AluSq/x SINE Alu -184 129 1 347 194 0 87 chrX 117930520 117930623 -44669307 + MER3 DNA MER1_type 8 101 -108 444 185 111 79 chrX 117930642 117930858 -44669072 + L1MCa LINE L1 4050 4272 -2154 1098 243 53 24 chrX 117930860 117931271 -44668659 + L1MCa LINE L1 4966 5388 -1038 305 281 70 35 chrX 117931297 117931468 -44668462 + L1MC4 LINE L1 7583 7759 -283 2076 120 10 7 chrX 117931481 117931780 -44668150 + AluSx SINE Alu 1 300 -12 3235 213 59 13 chrX 117931832 117932976 -44666954 + L1MC/D LINE L1 4513 5716 -743 191 229 202 18 chrX 117933417 117933526 -44666404 + MIR SINE MIR 123 251 -11 410 215 122 9 chrX 117933752 117933859 -44666071 + L2 LINE L2 3194 3312 -1 2026 106 0 17 chrX 117934203 117934495 -44665435 + AluSp SINE Alu 1 287 -26 1489 228 63 29 chrX 117934744 117935232 -44664698 - MLT1D LTR MaLR 0 505 1 351 325 125 70 chrX 117936537 117936992 -44662938 - L1M2 LINE L1 -5925 924 445 1737 171 11 7 chrX 117942890 117943197 -44656733 + AluJo SINE Alu 1 308 0 2219 108 0 3 chrX 117943206 117943503 -44656427 + AluSx SINE Alu 1 296 -16 657 162 73 0 chrX 117943592 117943728 -44656202 + L1MB4 LINE L1 6031 6176 -4 491 176 10 0 chrX 117944057 117944159 -44655771 - LTR37B LTR ERV1 -169 299 197 2864 220 68 27 chrX 117945999 117946766 -44653164 - MER21B LTR ERV1 -48 815 18 248 176 0 88 chrX 117946769 117946837 -44653093 - MER21B LTR ERV1 -767 96 35 1476 168 59 0 chrX 117946841 117947144 -44652786 + L1MA4 LINE L1 5966 6286 -14 31 0 0 0 chrX 117947150 117947181 -44652749 + AT_rich Low_complexity Low_complexity 1 31 0 1702 255 87 47 chrX 117947616 117948294 -44651636 + MER21B LTR ERV1 1 705 -158 370 75 30 15 chrX 117948492 117948559 -44651371 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 324 0 0 0 chrX 117948752 117948788 -44651142 + (TG)n Simple_repeat Simple_repeat 2 37 0 241 364 44 48 chrX 117949256 117949462 -44650468 + L2 LINE L2 2842 3046 -226 2180 88 0 63 chrX 117949557 117949876 -44650054 - AluSx SINE Alu -9 303 5 29 0 0 0 chrX 117949911 117949940 -44649990 + AT_rich Low_complexity Low_complexity 1 29 0 947 278 0 4 chrX 117950091 117950336 -44649594 - MIR SINE MIR -13 249 6 195 344 128 8 chrX 117950471 117950721 -44649209 + L2 LINE L2 942 1221 -2093 685 301 172 5 chrX 117951142 117951531 -44648399 - MLT1L LTR MaLR -31 584 131 507 308 44 19 chrX 117951858 117952017 -44647913 - MIR SINE MIR -83 179 17 804 206 0 15 chrX 117952248 117952384 -44647546 - AluJb SINE Alu -177 135 2 963 125 0 22 chrX 117952614 117952750 -44647180 - FLAM_C SINE Alu 0 133 1 27 0 0 0 chrX 117952751 117952778 -44647152 + AT_rich Low_complexity Low_complexity 1 27 0 2562 253 45 38 chrX 117952816 117953593 -44646337 + L1MCc LINE L1 5 1141 -5281 1558 152 75 58 chrX 117953589 117953623 -44646307 + L1MCc LINE L1 1553 1585 -5356 * 2115 79 0 0 chrX 117953623 117953876 -44646054 + AluSq SINE Alu 3 255 -58 1558 152 75 58 chrX 117953876 117953948 -44645982 + L1MCc LINE L1 1585 1654 -5287 3749 138 0 8 chrX 117953948 117954478 -44645452 - MER1A DNA MER1_type -1 526 1 1558 152 75 58 chrX 117954478 117954499 -44645431 + L1MCc LINE L1 1654 1673 -5268 3029 124 26 15 chrX 117954499 117954959 -44644971 - MER4C LTR ERV1 0 465 1 1558 152 75 58 chrX 117954959 117955191 -44644739 + L1MCc LINE L1 1673 1920 -5021 2488 199 107 34 chrX 117955204 117955375 -44644555 - MER50 LTR ERV1 0 734 577 2132 96 16 26 chrX 117955375 117955678 -44644252 + AluSg SINE Alu 1 300 -10 2488 199 107 34 chrX 117955678 117956178 -44643752 - MER50 LTR ERV1 -157 577 14 2238 106 12 12 chrX 117956178 117956500 -44643430 - MER50-int LTR ERV1 -2 7203 6882 * 14631 178 34 75 chrX 117956498 117957207 -44642723 - MER50-int LTR ERV1 -892 6526 5790 2443 69 0 13 chrX 117957207 117957510 -44642420 + AluSq SINE Alu 1 299 -14 14631 178 34 75 chrX 117957510 117957821 -44642109 - MER50-int LTR ERV1 -1628 5790 5468 3499 78 4 9 chrX 117957821 117958271 -44641659 - LTR7 LTR ERV1 -2 448 1 14631 178 34 75 chrX 117958271 117958370 -44641560 - MER50-int LTR ERV1 -1950 5468 5366 2210 114 0 0 chrX 117958370 117958677 -44641253 + AluSg SINE Alu 1 307 -3 14631 178 34 75 chrX 117958677 117959437 -44640493 - MER50-int LTR ERV1 -2052 5366 4577 2393 62 3 16 chrX 117959437 117959741 -44640189 - AluY SINE Alu -11 300 1 14631 178 34 75 chrX 117959741 117961528 -44638402 - MER50-int LTR ERV1 -2841 4577 795 1093 127 49 78 chrX 117961512 117961756 -44638174 - MER50-int LTR ERV1 -4804 1142 906 * 1291 115 26 5 chrX 117961733 117961925 -44638005 - MER50-int LTR ERV1 -814 4066 3871 773 134 31 8 chrX 117961907 117962034 -44637896 - MER50-int LTR ERV1 -1165 3715 3586 * 526 173 18 0 chrX 117962031 117962137 -44637793 - MER50-int LTR ERV1 -3800 1080 1004 * 1981 132 46 65 chrX 117962145 117962562 -44637368 - MER50-int LTR ERV1 -451 4766 1398 1273 126 48 17 chrX 117962559 117962789 -44637141 - MER50-int LTR ERV1 -5593 1612 1376 * 1886 127 6 30 chrX 117962790 117963144 -44636786 - MER4A LTR ERV1 0 664 261 392 145 181 0 chrX 117963144 117963227 -44636703 - MER4A LTR ERV1 -566 98 1 5097 151 70 15 chrX 117963227 117964305 -44635625 - MER50-int LTR ERV1 -5827 1378 161 2787 134 199 21 chrX 117964326 117964930 -44635000 + L1M1 LINE L1 1754 2464 -5101 438 217 130 0 chrX 117964930 117965022 -44634908 - MER50-int LTR ERV1 -7092 113 10 2469 223 106 19 chrX 117965068 117965735 -44634195 - MER50 LTR ERV1 0 734 10 1004 174 148 13 chrX 117965738 117965788 -44634142 + L1MCa LINE L1 1424 1466 -4960 180 0 0 0 chrX 117965788 117965808 -44634122 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1004 174 148 13 chrX 117965808 117966116 -44633814 + L1MCa LINE L1 1466 1919 -4507 1721 151 7 132 chrX 117966161 117966599 -44633331 + LTR8 LTR ERV1 1 383 -308 1298 81 141 0 chrX 117966599 117966797 -44633133 - MER4A-int LTR ERV1 -6372 226 1 1921 121 1 39 chrX 117966800 117967351 -44632579 - MER4A LTR ERV1 0 664 1 415 320 35 35 chrX 117967385 117967548 -44632382 - L1MC4a LINE L1 -1900 5908 5743 4829 117 23 26 chrX 117967548 117968277 -44631653 - LTR8A LTR ERV1 0 727 1 415 320 35 35 chrX 117968277 117968341 -44631589 - L1MC4a LINE L1 -2064 5744 5681 214 344 0 0 chrX 117968923 117968987 -44630943 - L2 LINE L2 -58 3214 3151 332 274 102 73 chrX 117975333 117975578 -44624352 - MIR SINE MIR -10 252 1 198 333 0 0 chrX 117975703 117975772 -44624158 - L2 LINE L2 -1010 2304 2236 180 0 0 0 chrX 117975983 117976003 -44623927 + (T)n Simple_repeat Simple_repeat 1 20 0 297 257 101 0 chrX 117976386 117976495 -44623435 - L1ME4a LINE L1 -204 5917 5798 479 236 34 27 chrX 117976662 117976677 -44623253 - L1MA10 LINE L1 -2 6332 6318 1810 201 30 72 chrX 117976677 117976812 -44623118 - L1ME1 LINE L1 -5 6161 6022 2045 128 0 43 chrX 117976812 117977116 -44622814 - AluSx SINE Alu -21 291 1 1810 201 30 72 chrX 117977116 117977518 -44622412 - L1ME1 LINE L1 -144 6022 5647 402 196 52 0 chrX 117977520 117977617 -44622313 - L1ME1 LINE L1 -1589 4557 4456 275 234 11 53 chrX 117977612 117977706 -44622224 - L1ME4a LINE L1 -1979 5829 5740 * 1587 187 78 15 chrX 117977717 117978048 -44621882 - MER90 LTR ERV1 -223 352 1 297 236 57 65 chrX 117978095 117978218 -44621712 - L1ME4a LINE L1 -2449 5546 5425 2131 131 3 0 chrX 117979530 117979827 -44620103 - AluSx SINE Alu -14 298 1 342 248 112 64 chrX 117979853 117979924 -44620006 + MARNA DNA Mariner 106 187 -399 707 133 8 31 chrX 117979924 117980052 -44619878 - L1MA6 LINE L1 0 6300 6176 342 248 112 64 chrX 117980052 117980105 -44619825 + MARNA DNA Mariner 187 236 -350 871 224 11 17 chrX 117981041 117981220 -44618710 - MER5B DNA MER1_type 0 178 1 529 269 101 32 chrX 117981221 117981529 -44618401 + L1ME4a LINE L1 5506 5834 -287 1874 135 36 0 chrX 117981808 117982089 -44617841 + AluSx SINE Alu 1 291 -21 1056 122 70 0 chrX 117982392 117982548 -44617382 + AluSq SINE Alu 128 294 -19 631 119 0 0 chrX 117983442 117983526 -44616404 + MER30 DNA MER1_type 147 230 0 391 245 83 44 chrX 117983561 117983627 -44616303 + L1MC5 LINE L1 7718 7780 -181 318 26 0 0 chrX 117983627 117983666 -44616264 + (CA)n Simple_repeat Simple_repeat 2 40 0 391 245 83 44 chrX 117983666 117983803 -44616127 + L1MC5 LINE L1 7780 7929 -32 27 0 0 0 chrX 117983911 117983938 -44615992 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chrX 117984145 117984169 -44615761 + AT_rich Low_complexity Low_complexity 1 24 0 246 311 48 48 chrX 117984190 117984293 -44615637 - MIR3 SINE MIR -94 114 12 700 303 55 9 chrX 117984702 117984920 -44615010 + MIR SINE MIR 3 230 -32 260 208 0 0 chrX 117985194 117985242 -44614688 - L2 LINE L2 0 3313 3266 1218 154 47 23 chrX 117985336 117985550 -44614380 + MER20 DNA MER1_type 1 219 0 456 295 26 73 chrX 117985615 117985849 -44614081 + MIR SINE MIR 34 256 -6 192 287 69 30 chrX 117986218 117986319 -44613611 + MIR SINE MIR 20 124 -84 355 263 50 50 chrX 117986478 117986638 -44613292 - MLT1I LTR MaLR -174 235 76 1521 196 107 9 chrX 117986642 117986968 -44612962 - MLT1A1 LTR MaLR 0 365 8 258 356 107 0 chrX 117987179 117987328 -44612602 + MIR SINE MIR 49 213 -49 1567 259 64 17 chrX 117987758 117988226 -44611704 + MLT1E2 LTR MaLR 137 626 0 294 220 29 2 chrX 117989296 117989366 -44610564 + L1ME LINE L1 5589 5652 -469 236 167 119 60 chrX 117989557 117989641 -44610289 + LTR66 LTR ERVL 40 128 -482 207 93 47 23 chrX 117990575 117990618 -44609312 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 243 171 134 12 chrX 117990650 117990732 -44609198 + MER53 DNA DNA 96 187 -2 370 254 219 13 chrX 117990738 117991008 -44608922 + MLT1H1 LTR MaLR 257 542 0 2498 73 3 0 chrX 117992056 117992358 -44607572 + AluSg SINE Alu 1 303 -7 180 0 0 0 chrX 117992656 117992676 -44607254 + (T)n Simple_repeat Simple_repeat 1 20 0 1974 60 0 0 chrX 117992680 117992915 -44607015 - AluY SINE Alu -76 235 1 267 200 77 0 chrX 117993479 117993544 -44606386 + MIR SINE MIR 108 177 -85 5551 127 27 12 chrX 117993894 117994785 -44605145 - L1MA8 LINE L1 -48 6243 5340 1442 123 28 20 chrX 117994785 117995037 -44604893 - L1MA5 LINE L1 0 6300 6047 1415 232 106 10 chrX 117995931 117996404 -44603526 - L1ME1 LINE L1 -196 5968 5455 2432 73 0 0 chrX 117996729 117997030 -44602900 - AluY SINE Alu -10 301 1 9276 146 16 12 chrX 117997328 117998296 -44601634 - L1MA2 LINE L1 0 6304 5341 2540 66 0 0 chrX 117998296 117998597 -44601333 - AluSc SINE Alu -8 301 1 9276 146 16 12 chrX 117998597 118000405 -44599525 - L1MA2 LINE L1 -963 5341 3508 2026 129 18 63 chrX 118000405 118000786 -44599144 - THE1B LTR MaLR 0 364 1 9276 146 16 12 chrX 118000786 118000827 -44599103 - L1MA2 LINE L1 -2796 3508 3469 33484 35 2 2 chrX 118000829 118001208 -44598722 - L1PA4 LINE L1 0 6155 5778 2829 22 0 0 chrX 118001208 118001521 -44598409 - AluYb8 SINE Alu -5 313 1 33484 35 2 2 chrX 118001521 118006200 -44593730 - L1PA4 LINE L1 -377 5778 1097 3296 213 30 6 chrX 118006198 118007089 -44592841 - L1MA2 LINE L1 -2661 3485 2573 * 1667 183 14 7 chrX 118057127 118057422 -44542508 + AluJo SINE Alu 1 297 -15 1567 148 3 130 chrX 118057668 118058006 -44541924 - AluJb SINE Alu -7 295 1 844 114 15 23 chrX 118058124 118058256 -44541674 - AluSq/x SINE Alu -180 133 3 596 323 76 40 chrX 118058999 118059667 -44540263 - L1M4 LINE L1 -3340 2806 2115 23 0 0 0 chrX 118060348 118060371 -44539559 + AT_rich Low_complexity Low_complexity 1 23 0 251 278 80 43 chrX 118060528 118060715 -44539215 - L1MC/D LINE L1 -1984 5824 5631 291 71 0 0 chrX 118061158 118061200 -44538730 + (TG)n Simple_repeat Simple_repeat 1 42 0 2270 96 3 3 chrX 118061722 118062023 -44537907 - AluSc SINE Alu -8 301 1 239 321 12 0 chrX 118062774 118062858 -44537072 - L2 LINE L2 0 3313 3229 432 99 8 19 chrX 118062860 118062987 -44536943 - MER53 DNA DNA -2 187 18 10742 132 12 87 chrX 118064229 118066372 -44533558 - L1P LINE L1 -3816 2330 348 2147 216 65 17 chrX 118066461 118067041 -44532889 - L1MB8 LINE L1 0 6178 5571 763 236 46 9 chrX 118067037 118067267 -44532663 - L1MD3 LINE L1 -324 7597 7200 * 45071 38 1 1 chrX 118067404 118073550 -44526380 - L1PA4 LINE L1 0 6155 7 2559 146 41 9 chrX 118074592 118075011 -44524919 - MSTB1 LTR MaLR 0 432 1 247 286 93 36 chrX 118075528 118075668 -44524262 + L1ME LINE L1 5505 5652 -469 183 224 20 20 chrX 118076526 118076575 -44523355 + MER5B DNA MER1_type 1 49 -129 329 173 0 0 chrX 118076860 118076912 -44523018 + MER53 DNA DNA 1 52 -137 213 94 0 0 chrX 118076956 118076988 -44522942 + (TATG)n Simple_repeat Simple_repeat 2 33 0 1583 236 16 18 chrX 118077003 118077384 -44522546 - MLT2D LTR ERVL -34 380 1 398 153 14 0 chrX 118077384 118077455 -44522475 + MER53 DNA DNA 118 189 0 282 228 216 6 chrX 118077520 118077682 -44522248 + MLT1F LTR MaLR 290 485 -57 2987 25 8 17 chrX 118078029 118078386 -44521544 + L1PA4 LINE L1 5799 6152 -3 2416 88 0 0 chrX 118078793 118079089 -44520841 + AluSc SINE Alu 1 296 -13 201 196 78 0 chrX 118080222 118080273 -44519657 + MIR SINE MIR 119 173 -89 3847 228 32 27 chrX 118081310 118082933 -44516997 - L1ME1 LINE L1 -168 5998 4372 207 69 0 0 chrX 118083186 118083215 -44516715 + (TGG)n Simple_repeat Simple_repeat 1 29 0 1767 164 16 23 chrX 118083226 118083536 -44516394 - AluJo SINE Alu -4 308 1 239 93 23 0 chrX 118083623 118083666 -44516264 + (TATG)n Simple_repeat Simple_repeat 2 45 0 454 219 57 0 chrX 118083864 118083987 -44515943 - L1MC4 LINE L1 -823 7219 7090 462 208 17 11 chrX 118083987 118084169 -44515761 + CT-rich Low_complexity Low_complexity 1 183 0 1870 141 0 7 chrX 118084171 118084447 -44515483 - AluJb SINE Alu -38 274 1 689 237 10 20 chrX 118084464 118084662 -44515268 - L1MC4 LINE L1 -953 7089 6894 427 279 20 91 chrX 118085520 118085659 -44514271 + MER5A DNA MER1_type 7 130 -59 2627 46 3 0 chrX 118085659 118085963 -44513967 - AluY SINE Alu -6 305 1 427 279 20 91 chrX 118085963 118086020 -44513910 + MER5A DNA MER1_type 130 189 0 828 283 103 44 chrX 118086142 118086996 -44512934 - L2 LINE L2 0 3313 2403 651 225 12 23 chrX 118087194 118087367 -44512563 - MIR SINE MIR -11 251 81 260 305 99 21 chrX 118087486 118087627 -44512303 - MIR SINE MIR -99 163 12 245 241 65 65 chrX 118087972 118088080 -44511850 - MIR3 SINE MIR -88 120 13 1899 232 46 2 chrX 118088266 118088740 -44511190 - L1ME3A LINE L1 -251 5919 5425 581 206 92 37 chrX 118088773 118089140 -44510790 - L1MC5 LINE L1 -440 7531 7270 795 277 30 11 chrX 118089152 118089419 -44510511 - L1MC5 LINE L1 -733 7228 6957 228 188 29 29 chrX 118089458 118089527 -44510403 - L1MD3 LINE L1 -1268 6727 6659 714 206 136 0 chrX 118089697 118089852 -44510078 + MER3 DNA MER1_type 32 207 -2 186 43 0 0 chrX 118089864 118089887 -44510043 + (TTC)n Simple_repeat Simple_repeat 2 24 0 962 305 40 5 chrX 118089887 118090254 -44509676 - L1MD3 LINE L1 -1921 5887 5505 2203 126 0 3 chrX 118091716 118092017 -44507913 + AluSx SINE Alu 1 300 -12 198 0 0 0 chrX 118092017 118092039 -44507891 + (TA)n Simple_repeat Simple_repeat 2 23 0 930 225 94 74 chrX 118092415 118092873 -44507057 + MLT1C LTR MaLR 1 467 0 562 314 11 11 chrX 118093009 118093200 -44506730 - MIR SINE MIR -45 217 27 238 314 144 0 chrX 118094324 118094442 -44505488 - MIR SINE MIR -70 192 58 2795 64 36 5 chrX 118094731 118095119 -44504811 - MLT2A1 LTR ERVL -44 400 1 21 57 0 0 chrX 118095437 118095472 -44504458 + AT_rich Low_complexity Low_complexity 1 35 0 763 251 16 0 chrX 118097248 118097431 -44502499 + MER3 DNA MER1_type 20 205 -4 759 262 21 11 chrX 118097442 118097721 -44502209 - L1MC4a LINE L1 -1907 5901 5620 206 365 0 28 chrX 118098055 118098162 -44501768 + MIR SINE MIR 3 106 -156 29 28 0 0 chrX 118098185 118098221 -44501709 + AT_rich Low_complexity Low_complexity 1 36 0 2747 125 26 0 chrX 118098701 118099124 -44500806 - MER57B LTR ERV1 0 434 1 253 104 83 0 chrX 118099432 118099480 -44500450 + Alu SINE Alu 244 295 -7 257 98 0 39 chrX 118099482 118099533 -44500397 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 348 127 0 0 chrX 118101104 118101159 -44498771 + (CA)n Simple_repeat Simple_repeat 2 56 0 327 157 0 0 chrX 118101158 118101228 -44498702 + GA-rich Low_complexity Low_complexity 2 71 0 * 2207 131 55 0 chrX 118101506 118101850 -44498080 - THE1B LTR MaLR 0 364 2 309 277 97 45 chrX 118102370 118102525 -44497405 - MIR SINE MIR -8 254 92 11151 174 13 15 chrX 118103820 118106233 -44493697 + L1 LINE L1 2733 5141 -1005 216 178 0 0 chrX 118106604 118106649 -44493281 + (CA)n Simple_repeat Simple_repeat 1 45 0 1037 178 5 0 chrX 118107079 118107276 -44492654 + L1PB1 LINE L1 3 200 -6663 11865 147 85 4 chrX 118107276 118108558 -44491372 + L1PB1 LINE L1 634 1811 -5051 2460 62 3 37 chrX 118108558 118108880 -44491050 + AluY SINE Alu 1 311 0 11865 147 85 4 chrX 118108880 118109507 -44490423 + L1PB1 LINE L1 1811 2386 -4476 180 111 0 0 chrX 118109507 118109534 -44490396 + (TATG)n Simple_repeat Simple_repeat 1 27 0 11865 147 85 4 chrX 118109534 118111414 -44488516 + L1PB1 LINE L1 2386 4731 -2131 5626 119 57 2 chrX 118111505 118111998 -44487932 + L1PB1 LINE L1 5499 5964 -903 213 94 0 0 chrX 118111998 118112030 -44487900 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 5626 119 57 2 chrX 118112030 118112500 -44487430 + L1PB1 LINE L1 5964 6407 -460 239 0 32 0 chrX 118112500 118112531 -44487399 + (TA)n Simple_repeat Simple_repeat 2 33 0 5626 119 57 2 chrX 118112531 118112881 -44487049 + L1PB1 LINE L1 6407 6867 0 317 317 28 7 chrX 118112998 118113140 -44486790 + L1MC/D LINE L1 5679 5823 -1985 243 311 158 30 chrX 118114174 118114338 -44485592 + MIR SINE MIR 8 192 -70 2311 92 0 0 chrX 118114763 118115058 -44484872 + AluSx SINE Alu 1 295 -17 423 0 0 0 chrX 118115065 118115112 -44484818 + (CA)n Simple_repeat Simple_repeat 2 48 0 614 108 0 10 chrX 118115524 118115626 -44484304 + (TCCCC)n Simple_repeat Simple_repeat 4 104 0 192 40 0 0 chrX 118115621 118115646 -44484284 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 288 282 0 0 chrX 118115975 118116053 -44483877 - L1M2 LINE L1 -505 5786 5709 186 194 118 86 chrX 118117222 118117315 -44482615 - MIR SINE MIR -85 123 28 4160 146 19 1 chrX 118117446 118118804 -44481126 - L1PA15 LINE L1 -282 5883 4506 1958 100 41 0 chrX 118118951 118119267 -44480663 - AluSx SINE Alu 0 327 1 996 313 97 36 chrX 118119351 118120379 -44479551 + L1ME3A LINE L1 2890 3980 -2166 1138 247 84 33 chrX 118120456 118120808 -44479122 + L1ME3A LINE L1 5410 5795 -375 2257 105 0 0 chrX 118120808 118121103 -44478827 + AluSx SINE Alu 1 295 -17 1138 247 84 33 chrX 118121103 118121235 -44478695 + L1ME3A LINE L1 5795 5919 -251 6091 81 19 2 chrX 118121319 118122183 -44477747 - L1MA2 LINE L1 0 6304 5427 271 287 159 0 chrX 118123101 118123241 -44476689 - MIR SINE MIR -65 143 35 569 317 26 23 chrX 118124032 118124341 -44475589 - L2 LINE L2 -601 2713 2404 676 230 11 22 chrX 118124522 118124700 -44475230 - MIR SINE MIR -6 256 81 425 294 82 7 chrX 118124800 118124946 -44474984 - MIR SINE MIR -98 164 8 997 232 12 0 chrX 118125322 118125568 -44474362 - L1ME LINE L1 -509 5661 5413 481 237 77 10 chrX 118125631 118125825 -44474105 - L1MC5 LINE L1 -492 7469 7263 24 53 0 0 chrX 118126515 118126553 -44473377 + AT_rich Low_complexity Low_complexity 1 38 0 936 214 117 77 chrX 118127180 118127624 -44472306 + MLT1C LTR MaLR 1 462 -5 558 333 6 6 chrX 118127725 118127908 -44472022 - MIR SINE MIR -54 208 26 254 229 14 0 chrX 118128181 118128251 -44471679 + GA-rich Low_complexity Low_complexity 4 74 0 2000 158 83 41 chrX 118128290 118128701 -44471229 - MSTA LTR MaLR 0 428 1 328 291 142 0 chrX 118129500 118129641 -44470289 - MIR SINE MIR -51 157 35 198 91 0 0 chrX 118130785 118130818 -44469112 + (TG)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chrX 118131271 118131294 -44468636 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 258 311 134 0 chrX 118131852 118131971 -44467959 - MIR SINE MIR -70 192 58 300 270 9 81 chrX 118132137 118132248 -44467682 - L1MC/D LINE L1 -2053 5755 5653 262 252 58 19 chrX 118132517 118132672 -44467258 - L1MC/D LINE L1 -2333 5475 5315 360 333 46 6 chrX 118133020 118133194 -44466736 + MIR SINE MIR 75 255 -7 242 362 7 27 chrX 118135644 118135793 -44464137 - MIR SINE MIR -67 195 50 225 284 0 0 chrX 118136133 118136200 -44463730 - L1ME LINE L1 -564 5598 5532 441 0 0 0 chrX 118136919 118136968 -44462962 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 21 57 0 0 chrX 118137756 118137791 -44462139 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chrX 118138398 118138418 -44461512 + (TG)n Simple_repeat Simple_repeat 2 21 0 2254 110 0 3 chrX 118338657 118338958 -44260972 - AluSx SINE Alu -12 300 1 23 68 0 0 chrX 118339028 118339072 -44260858 + AT_rich Low_complexity Low_complexity 1 44 0 295 193 0 0 chrX 118340246 118340303 -44259627 + LTR60 LTR ERV1 1 57 -529 1109 242 43 18 chrX 118340426 118340752 -44259178 + LTR43 LTR ERV1 132 465 -137 346 215 0 175 chrX 118341393 118341480 -44258450 - L1ME4a LINE L1 -2 6119 6085 2060 151 3 0 chrX 118341480 118341791 -44258139 + AluJb SINE Alu 1 312 0 346 215 0 175 chrX 118341791 118341903 -44258027 - L1ME4a LINE L1 -36 6085 5955 27 29 0 0 chrX 118342273 118342307 -44257623 + AT_rich Low_complexity Low_complexity 1 34 0 1464 239 103 48 chrX 118342444 118343345 -44256585 - L1MC4a LINE L1 -746 5400 4965 28 29 0 0 chrX 118343557 118343592 -44256338 + AT_rich Low_complexity Low_complexity 1 35 0 1434 220 19 0 chrX 118343789 118344107 -44255823 + L1M4 LINE L1 4902 5225 -921 273 119 0 0 chrX 118344486 118344528 -44255402 + (A)n Simple_repeat Simple_repeat 1 42 0 32 0 0 0 chrX 118344565 118344597 -44255333 + AT_rich Low_complexity Low_complexity 1 32 0 194 225 0 14 chrX 118345292 118345363 -44254567 + (TA)n Simple_repeat Simple_repeat 2 71 0 669 146 0 16 chrX 118345941 118346064 -44253866 - L1MB8 LINE L1 0 6178 6058 269 104 62 0 chrX 118346066 118346114 -44253816 + L1M4 LINE L1 4454 4504 -1642 2506 37 7 7 chrX 118346135 118346430 -44253500 + AluY SINE Alu 1 295 -16 1299 82 6 0 chrX 118346533 118346691 -44253239 - AluSx SINE Alu -153 159 1 251 234 57 32 chrX 118346770 118346894 -44253036 - L1MB8 LINE L1 -173 6005 5879 * 274 231 51 26 chrX 118346863 118346941 -44252989 - L1MC4a LINE L1 -1300 4846 4763 455 115 77 0 chrX 118346941 118347019 -44252911 - L1PA16 LINE L1 -1 6165 6082 274 231 51 26 chrX 118347019 118347057 -44252873 - L1MC4a LINE L1 -1383 4763 4727 3698 197 13 0 chrX 118347075 118347772 -44252158 - L1PA13 LINE L1 -4541 2246 1541 258 309 11 99 chrX 118347786 118347967 -44251963 + L2 LINE L2 2553 2717 -597 1586 292 116 41 chrX 118347967 118348681 -44251249 + L2 LINE L2 1909 2568 -746 1964 156 0 0 chrX 118348681 118349135 -44250795 - AluSx SINE Alu 0 454 1 270 0 0 0 chrX 118349145 118349175 -44250755 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 592 191 86 0 chrX 118349174 118349401 -44250529 - FLAM_A SINE Alu 0 236 1 1586 292 116 41 chrX 118349401 118349550 -44250380 + L2 LINE L2 2802 2851 -463 826 308 118 26 chrX 118349713 118350129 -44249801 + L2 LINE L2 2859 3312 -1 2576 65 0 0 chrX 118350184 118350492 -44249438 + AluY SINE Alu 1 308 -3 266 0 29 0 chrX 118350494 118350528 -44249402 + (GA)n Simple_repeat Simple_repeat 2 36 0 1434 200 75 101 chrX 118350529 118350881 -44249049 - MLT2B1 LTR ERVL -68 452 113 1596 159 59 21 chrX 118350881 118351171 -44248759 - AluJo SINE Alu -5 307 7 1434 200 75 101 chrX 118351171 118351282 -44248648 - MLT2B1 LTR ERVL -407 113 1 1709 172 131 31 chrX 118351502 118351862 -44248068 + MSTD LTR MaLR 1 396 0 1899 148 7 14 chrX 118352301 118352591 -44247339 + AluSx SINE Alu 1 288 -24 473 248 183 0 chrX 118352921 118353074 -44246856 + MIR SINE MIR 82 262 0 502 275 0 30 chrX 118353124 118353255 -44246675 + MIR SINE MIR 20 146 -62 2164 121 0 0 chrX 118354018 118354307 -44245623 + AluSg SINE Alu 1 289 -21 452 300 71 52 chrX 118354995 118355205 -44244725 - MIR SINE MIR 0 262 49 2052 108 25 0 chrX 118357018 118357297 -44242633 + AluSq SINE Alu 1 286 -27 3319 139 27 23 chrX 118358871 118359307 -44240623 + L1PB4 LINE L1 5590 6030 -126 2338 77 0 7 chrX 118359307 118359604 -44240326 + AluY SINE Alu 1 295 -16 3319 139 27 23 chrX 118359604 118359726 -44240204 + L1PB4 LINE L1 6030 6150 -6 2256 115 0 0 chrX 118360736 118361040 -44238890 - AluSg SINE Alu -6 304 1 1889 154 10 10 chrX 118361165 118361463 -44238467 + AluJb SINE Alu 1 298 -14 943 162 30 0 chrX 118361670 118361837 -44238093 - L1MB2 LINE L1 0 6171 6000 1809 154 0 33 chrX 118361912 118362217 -44237713 - AluJb SINE Alu -1 311 17 2845 54 24 0 chrX 118362472 118362808 -44237122 - LTR14A LTR ERVK 0 344 1 625 270 7 0 chrX 118362871 118363019 -44236911 + MIR SINE MIR 31 179 -83 447 68 0 0 chrX 118363066 118363125 -44236805 + (CTG)n Simple_repeat Simple_repeat 1 59 0 2169 167 74 10 chrX 118363583 118363990 -44235940 + MER63B DNA MER1_type 1 433 -3 2353 100 0 0 chrX 118364146 118364445 -44235485 - AluSq SINE Alu -14 299 1 571 273 152 31 chrX 118364900 118365189 -44234741 + L2 LINE L2 2949 3272 0 435 273 194 0 chrX 118365629 118365768 -44234162 - MIR SINE MIR -92 170 5 4551 126 16 126 chrX 118365878 118367426 -44232504 - pTR5 LTR ERV1 0 2606 1524 180 0 0 0 chrX 118369464 118369484 -44230446 + (GA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chrX 118369837 118369859 -44230071 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 901 168 142 26 chrX 118370702 118370928 -44229002 - L1MB8 LINE L1 -116 6062 5811 1236 185 44 13 chrX 118371035 118371352 -44228578 - L1MB7 LINE L1 -8 6176 5814 * 6991 174 42 54 chrX 118371347 118372463 -44227467 - L1MB8 LINE L1 0 6178 5050 1784 111 153 27 chrX 118372463 118372796 -44227134 - THE1C LTR MaLR 0 375 1 6991 174 42 54 chrX 118372796 118372957 -44226973 - L1MB8 LINE L1 -1128 5050 4889 4109 58 0 0 chrX 118372957 118373436 -44226494 - L1PA7 LINE L1 -5 6149 5671 6991 174 42 54 chrX 118373436 118374667 -44225263 - L1MB8 LINE L1 -1289 4889 3673 394 169 0 39 chrX 118375082 118375159 -44224771 + L1MB8 LINE L1 6105 6178 0 361 220 158 62 chrX 118375161 118375402 -44224528 - L1ME4a LINE L1 -23 6098 5835 193 203 76 101 chrX 118375755 118375834 -44224096 + MIR SINE MIR 158 234 -28 1796 121 86 7 chrX 118375858 118376138 -44223792 - AluJb SINE Alu -10 302 1 199 185 93 0 chrX 118376145 118376199 -44223731 - L3 LINE CR1 -573 1004 946 724 205 10 62 chrX 118376385 118376580 -44223350 + MIR SINE MIR 7 191 -71 278 356 0 26 chrX 118376566 118376681 -44223249 - MIR SINE MIR -131 131 20 * 24 0 0 0 chrX 118377417 118377441 -44222489 + AT_rich Low_complexity Low_complexity 1 24 0 665 298 71 8 chrX 118378260 118378498 -44221432 + MIR SINE MIR 10 262 0 264 365 47 0 chrX 118378716 118378823 -44221107 + L2 LINE L2 3193 3304 -9 5356 140 12 23 chrX 118380588 118381488 -44218442 - L1MB5 LINE L1 0 6174 5285 1131 147 167 131 chrX 118381488 118381930 -44218000 - MER4A LTR ERV1 0 664 207 925 183 0 0 chrX 118382197 118382350 -44217580 + FAM SINE Alu 20 172 -13 564 247 33 30 chrX 118382427 118382635 -44217295 - MIR3 SINE MIR -46 216 10 1057 264 12 19 chrX 118382680 118382938 -44216992 - MIR SINE MIR 0 262 7 1342 166 8 60 chrX 118383996 118384261 -44215669 + L1PB4 LINE L1 5906 6156 0 1915 96 82 34 chrX 118384468 118384760 -44215170 - AluSc SINE Alu -3 306 1 309 272 65 38 chrX 118384961 118385145 -44214785 - MER5A DNA MER1_type 0 189 1 1121 247 78 55 chrX 118385939 118386196 -44213734 - L2 LINE L2 -24 3289 3015 2232 104 7 10 chrX 118386196 118386503 -44213427 - AluSx SINE Alu -6 306 1 1121 247 78 55 chrX 118386503 118386718 -44213212 - L2 LINE L2 -298 3015 2806 2200 104 13 10 chrX 118389137 118389435 -44210495 + AluSp SINE Alu 1 299 -14 485 309 45 6 chrX 118389541 118389719 -44210211 - MIR3 SINE MIR -21 187 3 313 274 78 10 chrX 118390179 118390281 -44209649 - MIR SINE MIR -116 146 38 2239 99 0 13 chrX 118391999 118392349 -44207581 - AluY SINE Alu 0 311 1 2580 93 52 3 chrX 118392730 118393097 -44206833 - L1PB3 LINE L1 -2 6152 5768 3350 98 6 0 chrX 118393315 118393787 -44206143 - L1PB3 LINE L1 -375 5779 5305 989 137 0 29 chrX 118393773 118393948 -44205982 - L1PBb LINE L1 -5291 1572 1403 * 597 273 16 0 chrX 118393948 118394131 -44205799 - L1PBb LINE L1 -6669 194 9 1990 91 20 0 chrX 118394259 118394511 -44205419 + AluSg SINE Alu 1 257 -53 401 59 0 0 chrX 118394599 118394650 -44205280 + AluSg SINE Alu 246 296 -15 1636 189 7 7 chrX 118399647 118399933 -44199997 + AluJb SINE Alu 1 286 -26 1236 92 107 5 chrX 118400071 118400267 -44199663 - L1PB1 LINE L1 -1 6150 5935 1772 140 22 38 chrX 118400801 118401115 -44198815 - AluJb SINE Alu -3 309 1 779 216 6 28 chrX 118402556 118402737 -44197193 - MER5B DNA MER1_type -1 177 1 2486 60 3 19 chrX 118403524 118403839 -44196091 - AluY SINE Alu -1 310 1 2392 64 0 14 chrX 118406278 118406575 -44193355 - AluY SINE Alu -18 293 1 963 130 118 0 chrX 118407556 118407725 -44192205 - MER5A DNA MER1_type 0 189 1 940 181 204 4 chrX 118407822 118408092 -44191838 - MER33 DNA MER1_type 0 324 1 210 71 0 0 chrX 118408935 118408963 -44190967 + (A)n Simple_repeat Simple_repeat 1 28 0 366 61 0 0 chrX 118411395 118411444 -44188486 + (TCC)n Simple_repeat Simple_repeat 1 49 0 394 207 11 11 chrX 118412232 118412319 -44187611 - MER58 DNA MER1_type -8 2412 2326 2551 51 0 3 chrX 118412375 118412670 -44187260 - AluY SINE Alu -17 294 1 212 312 78 0 chrX 118414008 118414085 -44185845 + L2 LINE L2 3230 3312 -1 439 266 216 22 chrX 118414721 118415040 -44184890 + L2 LINE L2 650 1030 -2284 2118 189 44 40 chrX 118415063 118415559 -44184371 + MLT1D LTR MaLR 7 504 -1 198 339 156 23 chrX 118415570 118415788 -44184142 + L2 LINE L2 1065 1311 -2003 388 232 16 97 chrX 118415820 118416005 -44183925 + L2 LINE L2 726 895 -2419 1145 304 156 18 chrX 118416014 118416840 -44183090 + L2 LINE L2 1880 2819 -495 426 287 19 0 chrX 118416934 118417042 -44182888 + MER91A DNA MER1_type 10 119 -77 471 244 218 13 chrX 118417061 118417295 -44182635 + L2 LINE L2 2982 3263 -50 279 0 0 0 chrX 118417777 118417808 -44182122 + (T)n Simple_repeat Simple_repeat 1 31 0 333 0 0 0 chrX 118418651 118418688 -44181242 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 887 224 9 29 chrX 118419436 118419646 -44180284 + MIR SINE MIR 27 232 -30 219 271 0 0 chrX 118419667 118419715 -44180215 - L2 LINE L2 -88 3184 3137 2951 196 31 18 chrX 118420104 118420710 -44179220 + MER90 LTR ERV1 1 614 0 2172 113 3 3 chrX 118420971 118421263 -44178667 + AluSx SINE Alu 2 293 -19 484 55 14 14 chrX 118421263 118421336 -44178594 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 328 277 0 0 chrX 118421443 118421526 -44178404 + MIR SINE MIR 1 83 -179 410 171 0 13 chrX 118422581 118422657 -44177273 - L1MC/D LINE L1 -849 5510 5436 6459 131 26 13 chrX 118422664 118424499 -44175431 - L1MA9 LINE L1 -6 6306 4451 347 218 148 28 chrX 118425017 118425159 -44174771 + L1ME4a LINE L1 5943 6101 -20 619 155 0 0 chrX 118425160 118425263 -44174667 - L1MC1 LINE L1 0 6333 6231 1865 165 0 3 chrX 118425271 118425562 -44174368 - AluJo SINE Alu -22 290 1 1808 168 0 20 chrX 118426086 118426378 -44173552 + AluJb SINE Alu 1 286 -26 1733 179 0 25 chrX 118426504 118426822 -44173108 + AluJo SINE Alu 1 310 -2 213 277 127 12 chrX 118427097 118427195 -44172735 + MIR SINE MIR 50 156 -63 718 168 99 82 chrX 118427255 118427487 -44172443 + pTR5 LTR ERV1 743 978 -1460 2653 145 156 52 chrX 118427593 118428179 -44171751 + pTR5 LTR ERV1 1352 2037 -401 227 221 35 23 chrX 118428179 118428265 -44171665 + LTR30 LTR ERV1 556 642 -80 1720 59 54 0 chrX 118428267 118428489 -44171441 + LTR12 LTR ERV1 481 714 0 530 299 166 0 chrX 118428843 118429060 -44170870 + MIR SINE MIR 10 262 0 23 0 0 0 chrX 118429095 118429118 -44170812 + AT_rich Low_complexity Low_complexity 1 23 0 5078 82 26 57 chrX 118429096 118429872 -44170058 - L1PA10 LINE L1 0 6168 5417 247 314 103 6 chrX 118429925 118430081 -44169849 + MIR SINE MIR 11 181 -81 2155 100 0 45 chrX 118430126 118430437 -44169493 - AluSx SINE Alu -15 297 1 200 224 35 17 chrX 118430772 118430830 -44169100 + CT-rich Low_complexity Low_complexity 3 61 0 2453 72 7 3 chrX 118431745 118432049 -44167881 + AluY SINE Alu 1 305 -6 476 162 20 0 chrX 118434527 118434626 -44165304 + (CATA)n Simple_repeat Simple_repeat 2 102 0 368 273 36 61 chrX 118434887 118435052 -44164878 + MIR SINE MIR 92 252 -10 2124 126 0 25 chrX 118435237 118435526 -44164404 + AluSx SINE Alu 1 283 -29 180 0 0 0 chrX 118435526 118435546 -44164384 + (CA)n Simple_repeat Simple_repeat 1 20 0 2124 126 0 25 chrX 118435546 118435574 -44164356 + AluSx SINE Alu 283 310 -2 352 189 11 11 chrX 118435576 118435666 -44164264 + GA-rich Low_complexity Low_complexity 3 92 0 545 294 31 5 chrX 118435958 118436152 -44163778 - MIR SINE MIR 0 262 64 2355 90 7 10 chrX 118436849 118437159 -44162771 - AluSq SINE Alu -4 309 1 1224 230 159 31 chrX 118438580 118439033 -44160897 + MLT1J LTR MaLR 1 511 0 2518 65 10 0 chrX 118439367 118439675 -44160255 + AluY SINE Alu 1 311 0 246 321 143 0 chrX 118440602 118440742 -44159188 - MIR3 SINE MIR -3 205 46 234 102 0 61 chrX 118442410 118442459 -44157471 + L1MD2 LINE L1 6304 6349 -10 763 222 16 79 chrX 118443175 118443212 -44156718 - MIR SINE MIR -8 254 216 1549 181 93 48 chrX 118443212 118443588 -44156342 + MSTD LTR MaLR 1 393 -3 763 222 16 79 chrX 118443588 118443802 -44156128 - MIR SINE MIR -46 216 19 315 220 50 57 chrX 118444753 118445201 -44154729 - MER5A DNA MER1_type 0 189 50 2314 114 3 0 chrX 118444873 118445181 -44154749 - AluSx SINE Alu -3 309 1 190 274 59 65 chrX 118445181 118445236 -44154694 + MER5A DNA MER1_type 132 186 -3 456 216 46 138 chrX 118445889 118445942 -44153988 - MIR SINE MIR -49 213 157 2221 109 0 3 chrX 118445942 118446235 -44153695 + AluSx SINE Alu 1 292 -20 456 216 46 138 chrX 118446235 118446399 -44153531 - MIR SINE MIR -105 157 16 1035 193 21 5 chrX 118446547 118446734 -44153196 + MER63A DNA MER1_type 1 190 -20 357 182 84 84 chrX 118448047 118448190 -44151740 + L1ME4a LINE L1 5967 6109 -12 2336 86 6 22 chrX 118448989 118449125 -44150805 + AluSx SINE Alu 1 138 -174 2436 46 0 3 chrX 118449125 118449439 -44150491 + AluY SINE Alu 1 313 0 2336 86 6 22 chrX 118449439 118449615 -44150315 + AluSx SINE Alu 138 309 -3 261 57 0 0 chrX 118450259 118450294 -44149636 + (CA)n Simple_repeat Simple_repeat 2 36 0 249 234 0 0 chrX 118450527 118450591 -44149339 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 232 254 0 16 chrX 118451006 118451069 -44148861 - MIR SINE MIR -80 128 67 236 229 0 0 chrX 118451118 118451166 -44148764 + MER5B DNA MER1_type 1 48 -130 733 238 0 0 chrX 118451167 118451331 -44148599 - L1MA10 LINE L1 -2 6332 6169 439 220 33 47 chrX 118451356 118451506 -44148424 + MER5B DNA MER1_type 31 178 0 1196 258 158 43 chrX 118451863 118452678 -44147252 + L1ME3A LINE L1 4137 5045 -1101 426 157 0 67 chrX 118452683 118452772 -44147158 + FRAM/FAM SINE Alu 1 81 -95 513 273 66 56 chrX 118452817 118452929 -44147001 + L1ME3A LINE L1 5042 5151 -995 2000 126 58 0 chrX 118452929 118453223 -44146707 + AluSx SINE Alu 1 311 -1 513 273 66 56 chrX 118453223 118453396 -44146534 + L1ME3A LINE L1 5151 5330 -816 1141 233 53 113 chrX 118453406 118453929 -44146001 + L1ME3A LINE L1 5674 6165 -5 432 246 58 56 chrX 118454519 118454682 -44145248 - MIR SINE MIR -62 146 6 206 121 30 0 chrX 118454771 118454804 -44145126 + CT-rich Low_complexity Low_complexity 3 36 0 592 141 16 0 chrX 118455101 118455222 -44144708 + GA-rich Low_complexity Low_complexity 1 123 0 189 0 0 0 chrX 118456165 118456186 -44143744 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1453 136 164 8 chrX 118457031 118457281 -44142649 + AluSg1 SINE Alu 1 289 -20 23 54 0 0 chrX 118457283 118457320 -44142610 + AT_rich Low_complexity Low_complexity 1 37 0 12733 188 91 16 chrX 118457375 118459039 -44140891 - L1PB1 LINE L1 -1 6866 5328 2459 87 0 0 chrX 118459039 118459350 -44140580 - AluY SINE Alu 0 311 1 12733 188 91 16 chrX 118459350 118461290 -44138640 - L1PB1 LINE L1 -1539 5328 3535 2347 92 3 0 chrX 118461290 118461583 -44138347 + AluSg SINE Alu 1 294 -16 12733 188 91 16 chrX 118461583 118463741 -44136189 - L1PB1 LINE L1 -3332 3535 652 266 266 37 18 chrX 118463738 118463847 -44136083 - L1PB1 LINE L1 -6664 199 89 * 625 227 72 21 chrX 118464125 118464319 -44135611 - MIR SINE MIR 0 262 59 2062 133 20 0 chrX 118464844 118465144 -44134786 + AluSx SINE Alu 1 306 -6 221 213 0 0 chrX 118466180 118466227 -44133703 - MIR SINE MIR -168 94 48 1686 119 0 76 chrX 118468430 118468707 -44131223 + AluJb SINE Alu 28 283 -29 340 250 107 60 chrX 118469227 118469395 -44130535 - MER5B DNA MER1_type 0 178 3 423 0 0 0 chrX 118469899 118469946 -44129984 + (TG)n Simple_repeat Simple_repeat 2 48 0 587 304 39 23 chrX 118471705 118471962 -44127968 + MIR SINE MIR 2 262 0 580 292 72 24 chrX 118473259 118473468 -44126462 - MIR SINE MIR -41 221 3 379 280 80 13 chrX 118473613 118473763 -44126167 - MIR3 SINE MIR -32 176 17 2236 100 3 0 chrX 118474498 118474797 -44125133 - AluSx SINE Alu -12 300 1 981 216 136 13 chrX 118475506 118475807 -44124123 + MER46C DNA MER2_type 1 338 0 267 308 93 24 chrX 118475912 118476065 -44123865 - MIR SINE MIR -62 146 40 2029 124 17 3 chrX 118476411 118476710 -44123220 + AluSx SINE Alu 1 303 -9 2336 68 0 10 chrX 118476714 118477022 -44122908 + AluY SINE Alu 7 311 0 240 111 0 0 chrX 118477039 118477075 -44122855 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 1068 220 25 29 chrX 118477076 118477321 -44122609 - MIR SINE MIR -10 252 9 189 350 130 20 chrX 118477778 118477878 -44122052 + MIR SINE MIR 32 142 -66 548 231 31 8 chrX 118478291 118478421 -44121509 - MIR3 SINE MIR -8 200 68 363 189 16 63 chrX 118480010 118480137 -44119793 + (CAGAGA)n Simple_repeat Simple_repeat 2 122 0 225 178 0 0 chrX 118483021 118483066 -44116864 + GA-rich Low_complexity Low_complexity 1 45 0 283 274 261 59 chrX 118483091 118483244 -44116686 + MIR3 SINE MIR 22 205 -3 2386 66 0 7 chrX 118483384 118483685 -44116245 - AluSp SINE Alu -14 299 1 268 315 14 0 chrX 118484880 118484953 -44114977 - L2 LINE L2 -1 3312 3239 1422 120 131 44 chrX 118484960 118485234 -44114696 + AluSg SINE Alu 1 298 -12 186 337 87 0 chrX 118485648 118485740 -44114190 - MER5A DNA MER1_type -35 154 55 2074 114 3 16 chrX 118485840 118486156 -44113774 + AluSx SINE Alu 1 312 0 568 183 0 0 chrX 118486260 118486364 -44113566 + AluSg/x SINE Alu 209 312 0 198 0 0 0 chrX 118486364 118486386 -44113544 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 297 365 43 0 chrX 118486404 118486519 -44113411 - MIR SINE MIR -61 147 28 1551 117 4 9 chrX 118486570 118486801 -44113129 - AluSp SINE Alu -12 301 72 321 287 108 19 chrX 118486859 118487016 -44112914 - L2 LINE L2 -1 3312 3142 1985 80 0 0 chrX 118487229 118487479 -44112451 - AluSx SINE Alu -62 250 1 287 209 35 23 chrX 118487642 118487728 -44112202 - MIR SINE MIR -60 148 62 5086 145 8 46 chrX 118488389 118488748 -44111182 - L1MB3 LINE L1 0 6183 5812 1786 161 0 7 chrX 118488748 118489052 -44110878 - AluSx SINE Alu -10 302 1 5086 145 8 46 chrX 118489052 118489613 -44110317 - L1MB3 LINE L1 -371 5812 5300 2360 65 0 0 chrX 118489613 118489931 -44109999 + AluY SINE Alu 1 311 0 5086 145 8 46 chrX 118489931 118490053 -44109877 - L1MB3 LINE L1 -883 5300 5175 493 231 127 52 chrX 118490109 118490282 -44109648 + MIR SINE MIR 77 262 0 786 312 50 32 chrX 118490598 118491056 -44108874 - L2 LINE L2 -169 3103 2639 213 377 44 18 chrX 118491509 118491623 -44108307 + MIR3 SINE MIR 5 121 -87 194 402 49 30 chrX 118492782 118492946 -44106984 - L2 LINE L2 -1 3271 3105 344 310 103 21 chrX 118493228 118493373 -44106557 + L2 LINE L2 3116 3272 0 227 260 229 0 chrX 118494177 118494273 -44105657 + MIR SINE MIR 29 146 -62 711 219 10 75 chrX 118494273 118494474 -44105456 + L1MEc LINE L1 35 222 -6174 7991 187 59 30 chrX 118494479 118495566 -44104364 - L1MB7 LINE L1 -9 6175 5122 2147 104 10 3 chrX 118495566 118495875 -44104055 - AluSq SINE Alu -2 311 1 7991 187 59 30 chrX 118495875 118496253 -44103677 - L1MB7 LINE L1 -1062 5122 4757 2183 104 7 0 chrX 118496253 118496560 -44103370 - AluSc SINE Alu 0 309 1 7991 187 59 30 chrX 118496560 118497258 -44102672 - L1MB7 LINE L1 -1427 4757 4081 1972 93 35 14 chrX 118497258 118497547 -44102383 - AluSx SINE Alu -17 295 1 7991 187 59 30 chrX 118497547 118497669 -44102261 - L1MB7 LINE L1 -2103 4081 3964 1928 127 9 43 chrX 118497669 118497992 -44101938 - AluSx SINE Alu 0 312 1 7991 187 59 30 chrX 118497992 118498230 -44101700 - L1MB7 LINE L1 -2220 3964 3735 2047 78 0 46 chrX 118498230 118498400 -44101530 - AluSg SINE Alu -18 292 116 262 0 26 26 chrX 118498400 118498439 -44101491 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1922 113 3 11 chrX 118498439 118498723 -44101207 - AluY SINE Alu -29 282 1 2047 78 0 46 chrX 118498723 118498857 -44101073 - AluSg SINE Alu -192 118 1 7991 187 59 30 chrX 118498857 118499148 -44100782 - L1MB7 LINE L1 -2449 3735 3454 2480 157 35 28 chrX 118499148 118499606 -44100324 + LOR1b LTR ERV1 1 461 0 7991 187 59 30 chrX 118499606 118499782 -44100148 - L1MB7 LINE L1 -2730 3454 3102 478 252 189 0 chrX 118499982 118500125 -44099805 + MER5A DNA MER1_type 9 178 -11 271 286 0 0 chrX 118500557 118500627 -44099303 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 1847 248 78 49 chrX 118500708 118501203 -44098727 - MLT1E LTR MaLR -68 558 18 2174 96 10 0 chrX 118501230 118501522 -44098408 + AluSx SINE Alu 1 295 -17 1184 28 0 7 chrX 118501608 118501751 -44098179 - L1PA3 LINE L1 -1 6154 6013 290 56 0 0 chrX 118501751 118501787 -44098143 + L1PA4 LINE L1 5917 5952 -203 28 0 0 0 chrX 118502088 118502116 -44097814 + AT_rich Low_complexity Low_complexity 1 28 0 445 31 0 31 chrX 118502116 118502181 -44097749 + (TG)n Simple_repeat Simple_repeat 2 64 0 322 331 8 31 chrX 118502268 118502398 -44097532 + L2 LINE L2 3137 3263 -9 2218 91 0 10 chrX 118503024 118503331 -44096599 - AluY SINE Alu -7 304 1 2232 84 0 19 chrX 118503911 118504219 -44095711 + AluSq SINE Alu 1 302 -11 1793 152 0 3 chrX 118504577 118504866 -44095064 + AluJo SINE Alu 6 293 -19 2291 61 0 45 chrX 118505094 118505406 -44094524 + AluY SINE Alu 1 298 -13 2221 95 0 0 chrX 118505774 118506070 -44093860 + AluSc SINE Alu 1 296 -13 1508 170 50 3 chrX 118506332 118506615 -44093315 - AluJo SINE Alu -16 296 1 1134 212 33 8 chrX 118506689 118506934 -44092996 - MIR SINE MIR 0 262 12 742 264 85 35 chrX 118507017 118507062 -44092868 + MARNA DNA Mariner 63 104 -482 1695 98 112 4 chrX 118507062 118507339 -44092591 + AluSg1 SINE Alu 1 307 -2 742 264 85 35 chrX 118507339 118507611 -44092319 + MARNA DNA Mariner 104 396 -190 521 324 77 29 chrX 118507619 118507891 -44092039 - L2 LINE L2 -1 3271 2987 2066 121 7 0 chrX 118508311 118508608 -44091322 - AluSq SINE Alu -14 299 1 1958 196 11 3 chrX 118509925 118510287 -44089643 - MLT1A1 LTR MaLR 0 365 1 1219 169 18 18 chrX 118510588 118510807 -44089123 - MER20 DNA MER1_type 0 219 1 760 154 37 25 chrX 118511182 118511344 -44088586 - L1MB3 LINE L1 -2 6181 6018 195 42 0 0 chrX 118511349 118511373 -44088557 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1447 55 0 0 chrX 118511495 118511677 -44088253 + AluY SINE Alu 126 307 -4 2225 122 56 66 chrX 118512007 118512364 -44087566 - L1MB3 LINE L1 -160 6023 5669 1829 156 0 10 chrX 118512364 118512666 -44087264 - AluJb SINE Alu -13 299 1 2225 122 56 66 chrX 118512666 118512735 -44087195 - L1MB3 LINE L1 -514 5669 5601 224 149 21 0 chrX 118512983 118513030 -44086900 + A-rich Low_complexity Low_complexity 5 52 0 1659 182 0 3 chrX 118513050 118513352 -44086578 + AluSx SINE Alu 12 312 0 2148 113 0 0 chrX 118514682 118514975 -44084955 - AluSx SINE Alu -19 293 1 2292 116 11 30 chrX 118514975 118515420 -44084510 - L1MB3 LINE L1 -562 5621 5184 523 154 0 18 chrX 118515424 118515534 -44084396 + CT-rich Low_complexity Low_complexity 1 108 0 1263 179 0 9 chrX 118515534 118515935 -44083995 - AluJb SINE Alu 0 465 67 2194 78 0 3 chrX 118515939 118516221 -44083709 + AluY SINE Alu 5 285 -26 375 311 0 9 chrX 118516326 118516413 -44083517 + L1MC4 LINE L1 6614 6701 -1341 1972 121 3 3 chrX 118516413 118516702 -44083228 - AluSq SINE Alu -24 289 1 375 311 0 9 chrX 118516702 118516720 -44083210 + L1MC4 LINE L1 6701 6718 -1324 242 188 341 12 chrX 118518308 118518393 -44081537 - MIR SINE MIR -13 249 137 421 225 101 0 chrX 118518551 118518680 -44081250 - LTR50 LTR ERVL 0 795 654 610 165 61 0 chrX 118518702 118518817 -44081113 + MER3 DNA MER1_type 48 122 -87 2474 242 39 27 chrX 118518836 118519288 -44080642 + L1MD2 LINE L1 37 501 -5895 2356 93 0 0 chrX 118519288 118519590 -44080340 + AluY SINE Alu 2 303 -8 2474 242 39 27 chrX 118519590 118519807 -44080123 + L1MD2 LINE L1 501 714 -5682 1136 221 275 84 chrX 118519808 118520278 -44079652 + L1MD2 LINE L1 862 1241 -5155 370 100 20 0 chrX 118520278 118520446 -44079484 + AluJ/FRAM SINE Alu 230 398 0 1040 208 5 9 chrX 118520447 118520663 -44079267 + L1MB3 LINE L1 5965 6179 -4 1136 221 275 84 chrX 118520663 118520697 -44079233 + L1MD2 LINE L1 1241 1267 -5129 2254 103 17 0 chrX 118520697 118520998 -44078932 - AluSg SINE Alu 0 310 5 1136 221 275 84 chrX 118520998 118521014 -44078916 + L1MD2 LINE L1 1267 1279 -5117 2465 61 3 0 chrX 118521014 118521308 -44078622 - AluY SINE Alu -16 295 1 1136 221 275 84 chrX 118521308 118521392 -44078538 + L1MD2 LINE L1 1279 1346 -5050 2386 103 0 0 chrX 118521392 118521694 -44078236 - AluSq SINE Alu -11 302 1 1136 221 275 84 chrX 118521694 118522020 -44077910 + L1MD2 LINE L1 1346 2035 -4361 372 22 0 0 chrX 118522024 118522069 -44077861 + (TG)n Simple_repeat Simple_repeat 2 46 0 654 148 0 0 chrX 118522070 118522171 -44077759 + AluJb SINE Alu 198 298 -14 603 242 84 63 chrX 118522196 118522291 -44077639 + L1MD2 LINE L1 2271 2363 -3852 1085 216 193 50 chrX 118522291 118522731 -44077199 + MLT1D LTR MaLR 1 503 -2 603 242 84 63 chrX 118522731 118522920 -44077010 + L1MD2 LINE L1 2363 2561 -3654 3952 236 49 63 chrX 118522929 118523435 -44076495 + L1MD2 LINE L1 2840 3352 -2863 2653 47 0 0 chrX 118523435 118523735 -44076195 + AluY SINE Alu 1 300 -11 3952 236 49 63 chrX 118523735 118523882 -44076048 + L1MD2 LINE L1 3352 3500 -2715 225 65 0 0 chrX 118523882 118523913 -44076017 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 3952 236 49 63 chrX 118523913 118524289 -44075641 + L1MD2 LINE L1 3500 3880 -2335 1996 53 19 11 chrX 118524289 118524555 -44075375 + L1MA1 LINE L1 6035 6302 0 3952 236 49 63 chrX 118524555 118524900 -44075030 + L1MD2 LINE L1 3880 4192 -2023 1302 186 108 68 chrX 118524900 118525281 -44074649 - MSTD LTR MaLR 0 396 1 3952 236 49 63 chrX 118525281 118525524 -44074406 + L1MD2 LINE L1 4192 4437 -1778 1842 137 0 0 chrX 118525542 118525797 -44074133 + AluSx SINE Alu 4 258 -54 951 190 33 62 chrX 118525823 118525991 -44073939 + L1ME1 LINE L1 5683 5843 -323 2252 99 6 22 chrX 118525991 118526305 -44073625 + AluSc SINE Alu 1 309 0 951 190 33 62 chrX 118526305 118526378 -44073552 + L1ME1 LINE L1 5843 5917 -249 1812 149 39 0 chrX 118526420 118526701 -44073229 - AluSg SINE Alu -16 294 3 1649 171 4 18 chrX 118526733 118527014 -44072916 + AluJo SINE Alu 1 277 -35 349 200 0 0 chrX 118527029 118527099 -44072831 + L1MA10 LINE L1 6265 6334 0 286 190 52 0 chrX 118527101 118527159 -44072771 + L1MD2 LINE L1 4900 4960 -1255 980 170 6 23 chrX 118527168 118527339 -44072591 - REP3 LTR ERV -30 532 365 590 209 64 0 chrX 118527337 118527447 -44072483 - REP3 LTR ERV -420 142 26 * 809 263 80 24 chrX 118527465 118527754 -44072176 + MER68 LTR ERV1 258 562 0 629 199 43 31 chrX 118527757 118527918 -44072012 + L1MD2 LINE L1 4962 5124 -1091 2189 142 0 0 chrX 118527918 118528228 -44071702 + AluSx SINE Alu 1 310 -2 2476 80 0 6 chrX 118528228 118528580 -44071350 + AluSc SINE Alu 1 351 0 2340 97 0 13 chrX 118528599 118528909 -44071021 + AluSx SINE Alu 1 306 -6 353 213 40 75 chrX 118528909 118529073 -44070857 + L1MD2 LINE L1 5117 5276 -939 1941 155 3 0 chrX 118529078 118529369 -44070561 + AluJb SINE Alu 1 292 -20 940 180 0 0 chrX 118529369 118529552 -44070378 + AluJb SINE Alu 134 316 0 4125 195 16 99 chrX 118529552 118529914 -44070016 + L1MD2 LINE L1 5275 5665 -763 2137 121 0 0 chrX 118529914 118530222 -44069708 + AluSx SINE Alu 1 308 0 4125 195 16 99 chrX 118530222 118530276 -44069654 + L1MD2 LINE L1 5665 5722 -706 2236 98 3 7 chrX 118530276 118530573 -44069357 + AluSc SINE Alu 1 296 -13 4125 195 16 99 chrX 118530573 118530878 -44069052 + L1MD2 LINE L1 5722 6051 -377 2279 101 0 0 chrX 118530878 118531165 -44068765 + AluSx SINE Alu 1 287 -25 4125 195 16 99 chrX 118531165 118531407 -44068523 + L1MD2 LINE L1 6051 6117 -311 4737 89 13 38 chrX 118531407 118531780 -44068150 + L1MA2 LINE L1 5607 5955 -349 2117 117 3 3 chrX 118531780 118532070 -44067860 + AluSx SINE Alu 1 290 -22 4737 89 13 38 chrX 118532070 118532412 -44067518 + L1MA2 LINE L1 5955 6304 0 4125 195 16 99 chrX 118532412 118532691 -44067239 + L1MD2 LINE L1 6117 6418 -10 335 175 16 0 chrX 118532699 118532762 -44067168 + Charlie5 DNA MER1_type 2243 2306 -306 308 83 21 0 chrX 118532762 118532810 -44067120 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 2442 96 0 0 chrX 118532813 118533116 -44066814 - AluSx SINE Alu -9 303 1 325 82 0 0 chrX 118533116 118533165 -44066765 + Charlie5 DNA MER1_type 2294 2342 -270 484 229 16 41 chrX 118533174 118533296 -44066634 - LTR50 LTR ERVL -233 562 444 4036 140 103 28 chrX 118533296 118534687 -44065243 + pTR5 LTR ERV1 743 2606 0 1011 221 126 69 chrX 118534688 118534773 -44065157 - LTR50 LTR ERVL -349 446 367 2240 85 3 3 chrX 118534773 118535067 -44064863 - AluSc SINE Alu -14 295 2 1011 221 126 69 chrX 118535067 118535360 -44064570 - LTR50 LTR ERVL -428 367 39 2285 101 3 0 chrX 118535360 118535657 -44064273 + AluSx SINE Alu 1 298 -14 1011 221 126 69 chrX 118535657 118535697 -44064233 - LTR50 LTR ERVL -756 39 3 207 0 0 0 chrX 118537195 118537218 -44062712 + (TG)n Simple_repeat Simple_repeat 1 23 0 291 209 27 18 chrX 118537228 118537338 -44062592 + CT-rich Low_complexity Low_complexity 6 116 0 415 89 0 0 chrX 118537822 118537878 -44062052 - FRAM SINE Alu -71 105 50 241 333 35 14 chrX 118538236 118538377 -44061553 - MIR SINE MIR -70 192 49 744 191 0 0 chrX 118538394 118538530 -44061400 + FAM SINE Alu 1 49 0 243 242 48 16 chrX 118539706 118539768 -44060162 - L2 LINE L2 -5 3308 3245 244 274 95 0 chrX 118539817 118539912 -44060018 - MIR SINE MIR -25 237 134 498 242 0 96 chrX 118540164 118540211 -44059719 - MIR SINE MIR -119 143 93 2255 128 0 0 chrX 118540211 118540515 -44059415 + AluSx SINE Alu 1 304 -8 498 242 0 96 chrX 118540515 118540624 -44059306 - MIR SINE MIR -169 93 2 799 199 111 32 chrX 118540764 118540795 -44059135 + MIR SINE MIR 9 36 -226 4567 115 9 58 chrX 118540795 118540872 -44059058 - LTR8A LTR ERV1 0 727 648 1995 130 4 0 chrX 118540872 118541148 -44058782 + AluJo SINE Alu 1 277 -35 4567 115 9 58 chrX 118541148 118541678 -44058252 - LTR8A LTR ERV1 -79 648 162 2084 138 0 0 chrX 118541678 118541974 -44057956 + AluSx SINE Alu 1 296 -16 4567 115 9 58 chrX 118541974 118542129 -44057801 - LTR8A LTR ERV1 -565 162 1 799 199 111 32 chrX 118542129 118542313 -44057617 + MIR SINE MIR 36 241 -21 232 307 0 27 chrX 118542358 118542433 -44057497 - L2 LINE L2 -215 3057 2985 2566 64 0 13 chrX 118542437 118542748 -44057182 + AluY SINE Alu 1 307 -4 1204 104 12 29 chrX 118542748 118542921 -44057009 + AluSg/x SINE Alu 132 301 -9 2174 79 7 4 chrX 118543954 118544267 -44055663 + AluSg SINE Alu 1 314 0 4104 240 63 92 chrX 118544308 118545448 -44054482 + L1MA9 LINE L1 2686 3858 -2990 2510 70 0 0 chrX 118545448 118545749 -44054181 + AluY SINE Alu 1 301 -10 4104 240 63 92 chrX 118545749 118546686 -44053244 + L1MA9 LINE L1 3858 4821 -2027 2010 92 6 92 chrX 118546686 118546827 -44053103 + AluSc SINE Alu 1 102 -207 2623 58 0 3 chrX 118546827 118547139 -44052791 + AluY SINE Alu 1 311 0 2010 92 6 92 chrX 118547139 118547312 -44052618 + AluSc SINE Alu 102 288 -21 4104 240 63 92 chrX 118547312 118547328 -44052602 + L1MA9 LINE L1 4821 4836 -2012 2296 123 0 0 chrX 118547328 118547638 -44052292 + AluSq SINE Alu 1 310 -3 4104 240 63 92 chrX 118547638 118547990 -44051940 + L1MA9 LINE L1 4836 5197 -1651 1106 144 0 0 chrX 118547990 118548157 -44051773 + L1PA15 LINE L1 5992 6158 -7 4104 240 63 92 chrX 118548157 118548775 -44051155 + L1MA9 LINE L1 5197 5663 -1185 877 216 121 25 chrX 118548775 118549119 -44050811 + MSTD LTR MaLR 1 395 -1 3487 148 15 8 chrX 118549119 118549977 -44049953 + L1MA9 LINE L1 5662 6529 -485 448 93 4 29 chrX 118549979 118550067 -44049863 + L1MA9 LINE L1 5741 5827 -470 1507 156 5 0 chrX 118550067 118550291 -44049639 + AluJo SINE Alu 1 225 -87 1149 126 0 7 chrX 118550305 118550606 -44049324 + (GAA)n Simple_repeat Simple_repeat 1 300 0 764 203 14 44 chrX 118550606 118550812 -44049118 + L1MA9 LINE L1 5815 6017 -166 1514 148 0 130 chrX 118551645 118551837 -44048093 - AluJo SINE Alu -18 294 163 2391 88 10 0 chrX 118551837 118552131 -44047799 - AluSg SINE Alu -13 297 1 1514 148 0 130 chrX 118552131 118552276 -44047654 - AluJo SINE Alu -149 163 1 1483 196 9 41 chrX 118552519 118552689 -44047241 - AluJo SINE Alu -5 307 150 2215 124 3 0 chrX 118552689 118552995 -44046935 - AluSx SINE Alu -5 307 1 1483 196 9 41 chrX 118552995 118553141 -44046789 - AluJo SINE Alu -162 150 1 2511 79 3 0 chrX 118554444 118554747 -44045183 + AluSq SINE Alu 5 308 -5 1821 109 106 0 chrX 118554797 118555062 -44044868 - AluSx SINE Alu -19 293 1 369 0 0 0 chrX 118555905 118555946 -44043984 + (TG)n Simple_repeat Simple_repeat 2 42 0 940 122 0 27 chrX 118556115 118556263 -44043667 + L1PB4 LINE L1 5961 6104 -52 2371 114 27 103 chrX 118556265 118556712 -44043218 + MSTB LTR MaLR 1 413 -13 1294 112 73 35 chrX 118556727 118556987 -44042943 + L1MD2 LINE L1 5272 5541 -701 2085 182 52 109 chrX 118556989 118557069 -44042861 + L1MD2 LINE L1 5748 5831 -528 1956 155 20 0 chrX 118557069 118557366 -44042564 + AluJo SINE Alu 1 303 -9 2085 182 52 109 chrX 118557366 118557555 -44042375 + L1MD2 LINE L1 5831 6029 -330 2288 103 7 0 chrX 118557555 118557855 -44042075 + AluSq SINE Alu 1 302 -11 2085 182 52 109 chrX 118557855 118558233 -44041697 + L1MD2 LINE L1 6029 6359 0 1729 134 43 22 chrX 118558539 118558815 -44041115 - AluJb SINE Alu -30 282 1 1827 225 27 25 chrX 118558816 118559336 -44040594 - L1M4 LINE L1 -864 5282 4762 3292 208 52 73 chrX 118559341 118560255 -44039675 - L1PB4 LINE L1 0 6156 5225 2070 121 21 0 chrX 118560255 118560544 -44039386 + AluSx SINE Alu 1 295 -17 3292 208 52 73 chrX 118560544 118560718 -44039212 - L1PB4 LINE L1 -931 5225 5049 1879 158 3 10 chrX 118560718 118561016 -44038914 + AluJb SINE Alu 1 296 -16 3292 208 52 73 chrX 118561016 118561278 -44038652 - L1PB4 LINE L1 -1107 5049 3657 1305 141 51 0 chrX 118561278 118561512 -44038418 - L1MDb LINE L1 -4998 1411 1166 480 259 50 96 chrX 118561648 118561868 -44038062 - MIR SINE MIR -34 228 19 241 286 0 13 chrX 118562155 118562232 -44037698 + MIR SINE MIR 168 243 -19 5065 217 73 9 chrX 118562600 118563716 -44036214 - L1MDa LINE L1 -5232 1311 8 423 0 0 0 chrX 118563860 118563907 -44036023 + (TG)n Simple_repeat Simple_repeat 2 48 0 1899 301 35 43 chrX 118564733 118565833 -44034097 - HERVI LTR ERV1 -138 6511 5427 2208 89 0 40 chrX 118565833 118566136 -44033794 - AluY SINE Alu -20 291 1 1899 301 35 43 chrX 118566136 118566238 -44033692 - HERVI LTR ERV1 -1222 5427 5326 2382 334 39 34 chrX 118566279 118567731 -44032199 - HERVI LTR ERV1 -3400 4112 2878 2362 114 0 0 chrX 118567731 118568038 -44031892 - AluSc SINE Alu -2 307 1 2382 334 39 34 chrX 118568038 118568627 -44031303 - HERVI LTR ERV1 -4634 2878 2294 1516 274 61 35 chrX 118568740 118569514 -44030416 - HERVI LTR ERV1 -5702 2083 1290 285 29 0 0 chrX 118569793 118569827 -44030103 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2383 62 0 0 chrX 118569830 118570106 -44029824 - AluY SINE Alu -35 276 1 522 322 24 24 chrX 118570116 118570327 -44029603 - HERVI LTR ERV1 -6857 928 718 258 303 0 0 chrX 118570425 118570501 -44029429 - HERVI LTR ERV1 -6112 537 462 1022 184 63 79 chrX 118571465 118571821 -44028109 + MLT1D LTR MaLR 1 426 -79 2434 168 16 19 chrX 118571821 118572244 -44027686 - MSTB LTR MaLR -4 422 1 1022 184 63 79 chrX 118572244 118572322 -44027608 + MLT1D LTR MaLR 426 504 -1 961 165 64 0 chrX 118572479 118572599 -44027331 + MER3 DNA MER1_type 5 143 -66 2286 112 7 3 chrX 118572599 118572904 -44027026 - AluSx SINE Alu -6 306 1 961 165 64 0 chrX 118572904 118572971 -44026959 + MER3 DNA MER1_type 143 204 -5 2041 154 7 0 chrX 118573459 118573757 -44026173 + AluSx SINE Alu 1 300 -12 2220 87 0 0 chrX 118574164 118574439 -44025491 + AluSx SINE Alu 1 275 -37 267 31 0 0 chrX 118574441 118574473 -44025457 + (CA)n Simple_repeat Simple_repeat 1 32 0 3732 148 24 64 chrX 118574536 118574825 -44025105 + L1MB8 LINE L1 5450 5749 -429 1893 120 6 73 chrX 118574825 118575142 -44024788 + AluSc SINE Alu 1 296 -13 3732 148 24 64 chrX 118575142 118575232 -44024698 + L1MB8 LINE L1 5749 5841 -337 1753 178 7 4 chrX 118575232 118575546 -44024384 - AluJb SINE Alu 0 315 1 3732 148 24 64 chrX 118575546 118575918 -44024012 + L1MB8 LINE L1 5841 6173 -5 181 267 23 35 chrX 118576103 118576189 -44023741 + L2 LINE L2 2014 2098 -1216 598 271 49 36 chrX 118576292 118576517 -44023413 - L2 LINE L2 0 3313 3086 2357 62 0 36 chrX 118577114 118577421 -44022509 + AluY SINE Alu 1 296 -15 258 299 31 8 chrX 118578240 118578367 -44021563 - L2 LINE L2 -188 3125 2996 216 252 81 73 chrX 118578449 118578572 -44021358 - L2 LINE L2 -463 2851 2728 2594 156 2 5 chrX 118578572 118578969 -44020961 - MSTD LTR MaLR 0 396 1 945 169 102 34 chrX 118578969 118579205 -44020725 - MSTD-int LTR MaLR 0 1735 1484 2744 97 29 63 chrX 118579205 118579608 -44020322 + MSTA LTR MaLR 1 389 -39 2251 109 13 0 chrX 118579608 118579912 -44020018 - AluSc SINE Alu -1 308 1 2744 97 29 63 chrX 118579912 118579951 -44019979 + MSTA LTR MaLR 389 428 0 3567 219 23 58 chrX 118579951 118580793 -44019137 - MSTD-int LTR MaLR -247 1488 677 734 189 0 21 chrX 118581182 118581325 -44018605 - FLAM_C SINE Alu -3 140 1 676 295 15 22 chrX 118581325 118581593 -44018337 + L1ME LINE L1 5556 5821 -349 1131 183 5 5 chrX 118581786 118582006 -44017924 - AluJb SINE Alu 0 306 87 1624 147 0 100 chrX 118582075 118582395 -44017535 - AluJb SINE Alu -24 288 1 210 250 0 69 chrX 118583670 118583742 -44016188 + MIR3 SINE MIR 3 69 -139 2275 115 3 0 chrX 118584383 118584688 -44015242 + AluSx SINE Alu 2 307 -5 2002 112 0 4 chrX 118584690 118584959 -44014971 + AluY SINE Alu 1 268 -43 290 169 7 149 chrX 118585071 118585123 -44014807 - L1ME4a LINE L1 0 6121 6063 1000 112 5 48 chrX 118585123 118585311 -44014619 + L1MA6 LINE L1 6121 6300 0 290 169 7 149 chrX 118585311 118585343 -44014587 - L1ME4a LINE L1 -58 6063 6063 1949 146 7 0 chrX 118585343 118585647 -44014283 + AluSx SINE Alu 1 306 0 290 169 7 149 chrX 118585647 118585708 -44014222 - L1ME4a LINE L1 -58 6063 5995 694 255 73 0 chrX 118585733 118585925 -44014005 + MIR SINE MIR 57 262 0 1017 236 62 95 chrX 118585968 118586179 -44013751 - L1ME4a LINE L1 -305 5816 5600 2305 103 0 0 chrX 118586179 118586471 -44013459 + AluSc SINE Alu 3 294 -15 1017 236 62 95 chrX 118586471 118586530 -44013400 - L1ME4a LINE L1 -521 5600 5541 2190 115 7 13 chrX 118586530 118586834 -44013096 + AluSx SINE Alu 1 302 -10 1017 236 62 95 chrX 118586834 118586995 -44012935 - L1ME4a LINE L1 -580 5541 5398 2279 102 0 0 chrX 118587002 118587295 -44012635 - AluSx SINE Alu -19 293 1 281 267 147 22 chrX 118587463 118587647 -44012283 - L1ME3 LINE L1 0 6170 5961 477 309 53 16 chrX 118588082 118588270 -44011660 - LTR67 LTR ERVL -7 550 356 525 300 191 16 chrX 118588606 118588926 -44011004 - L2 LINE L2 -4 3309 2934 852 299 116 19 chrX 118588993 118589474 -44010456 - L2 LINE L2 -540 2774 2247 592 278 121 46 chrX 118589780 118590061 -44009869 + MER68 LTR ERV1 261 562 0 220 194 28 167 chrX 118590991 118591099 -44008831 - MIR SINE MIR -92 116 24 2076 122 3 10 chrX 118591886 118592190 -44007740 - AluSx SINE Alu -10 302 1 577 97 0 0 chrX 118593146 118593218 -44006712 + AluSq SINE Alu 115 186 -127 16610 94 15 43 chrX 118594233 118594633 -44005297 - Tigger1 DNA MER2_type 0 2418 2008 1868 122 44 0 chrX 118594633 118595068 -44004862 - AluSq SINE Alu 0 447 1 198 0 0 0 chrX 118595075 118595097 -44004833 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1912 131 45 8 chrX 118595099 118595367 -44004563 - AluSc SINE Alu -31 278 1 16610 94 15 43 chrX 118595367 118595759 -44004171 - Tigger1 DNA MER2_type -417 2001 1600 2463 119 70 7 chrX 118595759 118596162 -44003768 - MSTA LTR MaLR 0 428 1 16610 94 15 43 chrX 118596162 118596217 -44003713 - Tigger1 DNA MER2_type -818 1600 1545 2222 103 0 3 chrX 118596217 118596508 -44003422 - AluSx SINE Alu 0 312 23 16610 94 15 43 chrX 118596508 118597108 -44002822 - Tigger1 DNA MER2_type -873 1545 930 2255 101 0 7 chrX 118597108 118597405 -44002525 + AluSx SINE Alu 1 295 -17 16610 94 15 43 chrX 118597405 118597941 -44001989 - Tigger1 DNA MER2_type -1488 930 501 2662 46 0 3 chrX 118597941 118598248 -44001682 - AluY SINE Alu -5 306 1 16610 94 15 43 chrX 118598248 118598736 -44001194 - Tigger1 DNA MER2_type -1917 501 1 220 189 0 0 chrX 118599452 118599489 -44000441 + (TG)n Simple_repeat Simple_repeat 2 38 0 371 262 43 21 chrX 118600205 118600378 -43999552 + MLT1J1 LTR MaLR 66 237 -172 693 158 61 0 chrX 118600938 118601052 -43998878 + FLAM_A SINE Alu 11 131 -11 2167 125 0 16 chrX 118601212 118601523 -43998407 - AluSx SINE Alu -6 306 1 2330 76 0 36 chrX 118602653 118602955 -43996975 - AluSg1 SINE Alu -18 291 1 361 288 45 0 chrX 118603675 118603786 -43996144 + L2 LINE L2 3179 3294 -19 489 316 21 5 chrX 118603812 118604005 -43995925 - MIR SINE MIR -58 204 9 1763 38 5 0 chrX 118604206 118604416 -43995514 + L1PA5 LINE L1 5933 6143 -11 24 32 0 0 chrX 118604416 118604447 -43995483 + AT_rich Low_complexity Low_complexity 1 31 0 2328 62 3 14 chrX 118604457 118604749 -43995181 + AluY SINE Alu 1 289 -22 700 198 128 66 chrX 118604789 118605032 -43994898 - MIR SINE MIR -3 259 2 240 221 0 44 chrX 118605142 118605210 -43994720 - L2 LINE L2 -213 3059 2995 2163 133 0 10 chrX 118605220 118605528 -43994402 + AluSx SINE Alu 1 305 -7 3220 226 79 76 chrX 118606139 118607145 -43992785 + L2 LINE L2 1670 2682 -632 2624 44 0 0 chrX 118607145 118607440 -43992490 + AluY SINE Alu 1 295 -16 3220 226 79 76 chrX 118607440 118607570 -43992360 + L2 LINE L2 2682 2810 -504 608 232 11 39 chrX 118607618 118607799 -43992131 + L2 LINE L2 3138 3313 0 2065 108 45 0 chrX 118608281 118608567 -43991363 + AluSx SINE Alu 1 299 -13 186 374 33 22 chrX 118608723 118608814 -43991116 - L2 LINE L2 -189 3083 2992 1000 184 58 58 chrX 118609147 118609183 -43990747 - MER58A DNA MER1_type -2197 223 188 2057 128 0 0 chrX 118609183 118609465 -43990465 + AluJo SINE Alu 1 282 -30 231 114 0 0 chrX 118609465 118609500 -43990430 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1000 184 58 58 chrX 118609500 118609685 -43990245 - MER58A DNA MER1_type -2230 190 1 2365 94 7 0 chrX 118610054 118610351 -43989579 + AluSx SINE Alu 1 299 -13 528 16 0 0 chrX 118610360 118610421 -43989509 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 383 235 161 9 chrX 118610709 118610926 -43989004 - L1ME4a LINE L1 0 6121 5872 248 268 162 7 chrX 118610960 118611102 -43988828 - L1MC4 LINE L1 -292 7750 7587 279 271 0 0 chrX 118611112 118611197 -43988733 + L2 LINE L2 3229 3313 0 323 176 10 108 chrX 118611218 118611320 -43988610 - MIR3 SINE MIR -40 168 77 1738 77 0 96 chrX 118611343 118611604 -43988326 - AluSc SINE Alu -7 302 67 880 59 0 0 chrX 118611604 118611705 -43988225 - AluSc SINE Alu -208 101 1 1353 199 64 3 chrX 118611723 118612035 -43987895 - MER58D DNA MER1_type 0 386 56 2070 76 80 4 chrX 118612201 118612476 -43987454 - AluSx SINE Alu -16 296 1 364 234 38 124 chrX 118612694 118612864 -43987066 + HAL1 LINE L1 2316 2466 -41 1644 124 24 97 chrX 118612864 118612968 -43986962 + AluJb SINE Alu 22 132 -180 2476 94 0 0 chrX 118612968 118613275 -43986655 - AluSx SINE Alu -5 307 1 1644 124 24 97 chrX 118613275 118613468 -43986462 + AluJb SINE Alu 132 297 -15 364 234 38 124 chrX 118613468 118613506 -43986424 + HAL1 LINE L1 2466 2506 -1 3306 153 69 12 chrX 118613889 118614529 -43985401 + L1MB7 LINE L1 5421 6096 -88 1192 140 21 0 chrX 118614529 118614715 -43985215 - AluJb SINE Alu -3 309 120 2310 90 7 3 chrX 118614871 118615171 -43984759 + AluSx SINE Alu 12 312 0 2345 90 3 3 chrX 118615198 118615497 -43984433 + AluSx SINE Alu 1 299 -13 273 268 42 78 chrX 118616729 118616871 -43983059 + MIR SINE MIR 78 214 -48 1092 253 96 20 chrX 118617089 118617485 -43982445 + MER110A LTR ERV1 43 468 0 491 158 0 0 chrX 118617523 118617605 -43982325 - FLAM_A SINE Alu -12 130 49 2127 103 17 3 chrX 118617649 118617941 -43981989 - AluSx SINE Alu -16 296 1 1972 162 0 3 chrX 118618578 118618887 -43981043 + AluJb SINE Alu 1 308 -4 233 0 62 0 chrX 118619098 118619130 -43980800 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 474 207 0 0 chrX 118619181 118619263 -43980667 - AluJ/FLAM SINE Alu -229 83 2 1802 189 3 3 chrX 118619271 118619568 -43980362 - AluJb SINE Alu -15 297 1 2456 82 0 0 chrX 118619647 118619952 -43979978 + AluY SINE Alu 1 305 -6 182 247 49 25 chrX 118620179 118620260 -43979670 + MIR SINE MIR 71 153 -109 1781 127 51 48 chrX 118620318 118620610 -43979320 - AluSx SINE Alu -19 293 1 183 214 107 0 chrX 118620709 118620765 -43979165 - MIR SINE MIR -71 191 130 * 198 287 168 0 chrX 118620761 118620862 -43979068 + L3 LINE CR1 1007 1124 -453 2000 140 0 13 chrX 118621084 118621384 -43978546 + AluJb SINE Alu 1 296 -16 2490 81 3 3 chrX 118621669 118621979 -43977951 - AluSq SINE Alu -3 310 1 886 282 17 4 chrX 118622252 118622486 -43977444 - MIR SINE MIR -1 261 25 2451 84 0 6 chrX 118622600 118622911 -43977019 - AluY SINE Alu -2 309 1 213 139 0 0 chrX 118623190 118623226 -43976704 - L2 LINE L2 -18 3254 3219 708 283 98 26 chrX 118623226 118623604 -43976326 - L2 LINE L2 -1 3312 2908 636 280 59 28 chrX 118623970 118624291 -43975639 - L1ME LINE L1 -327 5794 5464 281 289 10 21 chrX 118624512 118624609 -43975321 + MIR SINE MIR 5 100 -162 242 158 0 0 chrX 118624611 118624649 -43975281 - L1M2a LINE L1 -5380 1788 1751 2305 87 44 0 chrX 118625233 118625352 -43974578 + AluY SINE Alu 1 113 -198 184 30 61 0 chrX 118625352 118625385 -43974545 + A-rich Low_complexity Low_complexity 127 161 0 2305 87 44 0 chrX 118625385 118625563 -43974367 + AluY SINE Alu 113 311 0 507 313 47 9 chrX 118625595 118625806 -43974124 + MIR SINE MIR 31 249 -13 1283 160 29 0 chrX 118625815 118626021 -43973909 + AluJb SINE Alu 85 296 -16 2147 124 0 0 chrX 118626981 118627272 -43972658 + AluSx SINE Alu 1 291 -21 349 277 87 22 chrX 118628954 118629138 -43970792 + HAL1b LINE L1 1152 1347 -1 180 0 0 0 chrX 118629311 118629331 -43970599 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 2242 97 0 37 chrX 118632593 118632914 -43967016 + AluSc SINE Alu 1 309 0 788 223 160 26 chrX 118633188 118633587 -43966343 + MLT1D LTR MaLR 4 484 -21 1949 127 52 57 chrX 118633590 118633975 -43965955 - MLT1B LTR MaLR 0 390 8 180 0 0 0 chrX 118634829 118634849 -43965081 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 314 285 81 27 chrX 118635108 118635329 -43964601 + L1MEc LINE L1 1913 2145 -4576 227 240 39 0 chrX 118635641 118635745 -43964185 + L1MEc LINE L1 2460 2567 -3973 * 5886 123 48 2 chrX 118635736 118636700 -43963230 + L1MA4A LINE L1 5289 6296 -7 1686 260 99 26 chrX 118636710 118637277 -43962653 + L1MEc LINE L1 2556 3080 -3460 2292 57 0 0 chrX 118637277 118637540 -43962390 + AluY SINE Alu 35 297 -14 1686 260 99 26 chrX 118637540 118637780 -43962150 + L1MEc LINE L1 3080 3301 -3239 447 194 204 0 chrX 118637780 118637897 -43962033 + FLAM_A SINE Alu 5 140 0 1686 260 99 26 chrX 118637897 118638052 -43961878 + L1MEc LINE L1 3301 3561 -2979 707 211 0 20 chrX 118638058 118638205 -43961725 + L1MEc LINE L1 4471 4614 -1926 961 27 0 0 chrX 118638207 118638318 -43961612 - L1PA5 LINE L1 -7 6147 6037 827 80 0 9 chrX 118638318 118638430 -43961500 + L1PA5 LINE L1 5853 5963 -191 * 4614 162 62 62 chrX 118638405 118638842 -43961088 + L1MB7 LINE L1 4607 5042 -1536 2098 139 0 19 chrX 118638842 118639158 -43960772 + AluSx SINE Alu 1 310 -2 4614 162 62 62 chrX 118639158 118639613 -43960317 + L1MB7 LINE L1 5042 5495 -1083 189 0 0 0 chrX 118639613 118639634 -43960296 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4614 162 62 62 chrX 118639634 118639664 -43960266 + L1MB7 LINE L1 5495 5523 -1055 613 54 0 0 chrX 118639664 118639738 -43960192 - Alu SINE Alu -14 298 225 4614 162 62 62 chrX 118639738 118639776 -43960154 + L1MB7 LINE L1 5523 5559 -1019 2004 136 10 0 chrX 118639776 118640071 -43959859 + AluSx SINE Alu 1 298 -14 4614 162 62 62 chrX 118640071 118640569 -43959361 + L1MB7 LINE L1 5559 6055 -523 2531 54 0 3 chrX 118640569 118640864 -43959066 - AluY SINE Alu -17 294 1 4614 162 62 62 chrX 118640864 118641315 -43958615 + L1MB7 LINE L1 6055 6578 0 288 219 0 14 chrX 118641313 118641386 -43958544 + L1ME3A LINE L1 5894 5965 -205 * 373 265 33 57 chrX 118641437 118641648 -43958282 + L1ME3A LINE L1 5962 6167 -3 321 277 109 50 chrX 118641877 118642062 -43957868 + MIR SINE MIR 11 214 -48 854 183 18 6 chrX 118642062 118642226 -43957704 - FAM SINE Alu -9 166 1 321 277 109 50 chrX 118642226 118642278 -43957652 + MIR SINE MIR 214 262 0 1921 135 0 4 chrX 118642390 118642664 -43957266 - AluSx SINE Alu -22 290 18 286 315 9 9 chrX 118642676 118642784 -43957146 - MIR SINE MIR -135 127 20 423 289 7 20 chrX 118643637 118643786 -43956144 + MIR SINE MIR 90 236 -26 415 214 12 0 chrX 118643806 118643890 -43956040 + L2 LINE L2 3227 3311 -2 1938 163 3 0 chrX 118643977 118644278 -43955652 + AluJo SINE Alu 1 302 -10 340 239 34 51 chrX 118645162 118645279 -43954651 + L2 LINE L2 3158 3272 0 190 333 0 0 chrX 118645320 118645377 -43954553 + L3 LINE CR1 1230 1286 -291 2204 123 0 0 chrX 118645391 118645691 -43954239 - AluSx SINE Alu -12 300 1 949 237 39 27 chrX 118645696 118646035 -43953895 - L1MD3 LINE L1 0 8042 7712 431 324 38 33 chrX 118646052 118646262 -43953668 + L3 LINE CR1 1293 1503 -74 406 234 38 44 chrX 118646498 118646656 -43953274 - MIR SINE MIR 0 262 106 1773 177 3 20 chrX 118646758 118647058 -43952872 + AluJo SINE Alu 1 295 -17 281 340 0 11 chrX 118647443 118647537 -43952393 + L2 LINE L2 2986 3078 -194 357 241 142 7 chrX 118649104 118649245 -43950685 - MER117 DNA MER1_type -37 160 1 614 122 52 61 chrX 118649285 118649400 -43950530 + FLAM_A SINE Alu 18 131 -11 1442 133 13 110 chrX 118649544 118649668 -43950262 - L1M3 LINE L1 -457 5714 5580 2619 70 0 0 chrX 118649668 118649981 -43949949 - AluSp SINE Alu 0 313 1 1442 133 13 110 chrX 118649981 118650165 -43949765 - L1M3 LINE L1 -591 5580 5436 * 1966 185 10 13 chrX 118650159 118650542 -43949388 - L1MD1 LINE L1 -416 5826 5445 3474 117 0 2 chrX 118650542 118651040 -43948890 - LOR1a LTR ERV1 0 497 1 375 23 0 0 chrX 118651411 118651455 -43948475 + (TG)n Simple_repeat Simple_repeat 1 44 0 1907 86 0 0 chrX 118651594 118651827 -43948103 + AluSq SINE Alu 5 237 -76 1598 173 0 4 chrX 118851827 118852082 -43747848 + AluJb SINE Alu 59 312 0 342 231 0 11 chrX 118852252 118852343 -43747587 + L1MA2 LINE L1 6213 6302 -2 492 318 127 82 chrX 118853768 118854580 -43745350 + L2 LINE L2 2444 3311 -2 200 206 174 130 chrX 118855453 118855491 -43744439 - MER5A DNA MER1_type -85 104 69 2053 123 3 10 chrX 118855491 118855793 -43744137 - AluSx SINE Alu -12 300 1 200 206 174 130 chrX 118855793 118855846 -43744084 - MER5A DNA MER1_type -120 69 9 1342 222 31 1 chrX 118855862 118856161 -43743769 - MER58B DNA MER1_type 0 341 36 347 289 132 13 chrX 118857698 118857850 -43742080 - MIR SINE MIR -6 256 87 1958 118 52 7 chrX 118858520 118858809 -43741121 - AluSx SINE Alu -10 302 1 984 172 108 1 chrX 118859652 118859859 -43740071 + MSTB1 LTR MaLR 113 344 -88 2612 149 16 2 chrX 118859883 118860306 -43739624 + MSTB1 LTR MaLR 4 432 0 1388 141 4 50 chrX 118860791 118861032 -43738898 + AluJb SINE Alu 83 312 0 199 279 0 58 chrX 118862284 118862370 -43737560 + L2 LINE L2 3222 3302 -11 2049 82 0 72 chrX 118862869 118863175 -43736755 - AluSx SINE Alu -28 284 1 439 276 25 2 chrX 118864145 118864276 -43735654 + L1ME LINE L1 5491 5610 -552 27 0 0 0 chrX 118864282 118864309 -43735621 + AT_rich Low_complexity Low_complexity 1 27 0 660 290 33 33 chrX 118865024 118865269 -43734661 - MIR SINE MIR -1 261 17 2208 74 10 10 chrX 118865640 118865938 -43733992 + AluSc SINE Alu 1 298 -11 336 277 22 51 chrX 118866011 118866148 -43733782 + MIR SINE MIR 74 206 -56 222 254 0 45 chrX 118866598 118866665 -43733265 + L2 LINE L2 3209 3272 0 31 44 0 0 chrX 118867412 118867457 -43732473 + AT_rich Low_complexity Low_complexity 1 45 0 252 226 0 0 chrX 118868406 118868459 -43731471 + MER4-int LTR ERV1 1111 1163 -5435 231 114 0 0 chrX 118868533 118868568 -43731362 + (TA)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chrX 118868567 118868592 -43731338 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1788 167 0 7 chrX 118869155 118869449 -43730481 + AluJb SINE Alu 1 292 -20 387 242 81 8 chrX 118869622 118869746 -43730184 - MER94 DNA DNA 0 134 2 440 295 25 0 chrX 118870118 118870240 -43729690 + MIR3 SINE MIR 36 160 -48 308 43 22 0 chrX 118873125 118873171 -43726759 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4018 19 4 0 chrX 118873173 118873638 -43726292 - L1PA2 LINE L1 -11 6144 5678 278 289 141 55 chrX 118875288 118875416 -43724514 - L2 LINE L2 0 3272 3134 818 143 11 28 chrX 118875508 118875690 -43724240 + CT-rich Low_complexity Low_complexity 2 180 0 252 0 0 0 chrX 118875690 118875718 -43724212 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 427 197 0 0 chrX 118875749 118875825 -43724105 - AluJb SINE Alu -53 259 184 4065 83 5 7 chrX 118876369 118876926 -43723004 - L1PA10 LINE L1 -4 6164 5609 212 171 0 0 chrX 118877250 118877291 -43722639 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 325 47 0 0 chrX 118877841 118877884 -43722046 + MADE1 DNA Mariner 1 43 -37 1870 113 18 25 chrX 118878694 118878977 -43720953 + AluSx SINE Alu 1 281 -31 324 103 0 0 chrX 118878980 118879038 -43720892 + (TA)n Simple_repeat Simple_repeat 2 59 0 1407 143 80 5 chrX 118881118 118881498 -43718432 - L1M2 LINE L1 -829 5462 4947 693 107 0 18 chrX 118881503 118881615 -43718315 - L1M LINE L1 -862 5429 5320 2257 129 10 33 chrX 118881618 118882014 -43717916 + L1MA7 LINE L1 5905 6291 0 461 354 48 70 chrX 118882159 118882515 -43717415 - L2 LINE L2 -20 3252 2905 1149 220 63 63 chrX 118882531 118883019 -43716911 - MER39 LTR ERV1 0 676 1 1886 159 3 0 chrX 118883077 118883366 -43716564 + AluJb SINE Alu 3 292 -20 24 0 0 0 chrX 118884209 118884233 -43715697 + AT_rich Low_complexity Low_complexity 1 24 0 2200 90 10 7 chrX 118884243 118884544 -43715386 - AluSx SINE Alu -10 302 1 449 304 87 39 chrX 118885081 118885393 -43714537 + L2 LINE L2 2916 3242 -71 217 240 67 40 chrX 118885488 118885563 -43714367 + L3b LINE CR1 1107 1183 -400 338 291 120 29 chrX 118885604 118885779 -43714151 - MIR SINE MIR 0 262 72 23 33 0 0 chrX 118886923 118886953 -43712977 + AT_rich Low_complexity Low_complexity 1 30 0 318 143 0 0 chrX 118887269 118887318 -43712612 + L2 LINE L2 3265 3313 0 28 29 0 0 chrX 118887596 118887631 -43712299 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chrX 118887874 118887906 -43712024 + AT_rich Low_complexity Low_complexity 1 32 0 206 396 0 10 chrX 118888321 118888417 -43711513 + L2 LINE L2 3173 3267 -5 277 263 105 0 chrX 118888615 118888691 -43711239 + MIR SINE MIR 71 154 -108 22 56 0 0 chrX 118888762 118888798 -43711132 + AT_rich Low_complexity Low_complexity 1 36 0 292 164 14 14 chrX 118888883 118888956 -43710974 + (TA)n Simple_repeat Simple_repeat 1 73 0 416 282 53 117 chrX 118889220 118889486 -43710444 - L2 LINE L2 -1 3271 3023 21 0 0 0 chrX 118890995 118891016 -43708914 + AT_rich Low_complexity Low_complexity 1 21 0 459 50 0 0 chrX 118892344 118892404 -43707526 - L1PA3 LINE L1 -11 6144 6085 21 36 0 0 chrX 118892749 118892777 -43707153 + AT_rich Low_complexity Low_complexity 1 28 0 2100 205 37 120 chrX 118893280 118893553 -43706377 + L1MC4a LINE L1 6959 7253 -555 2710 85 11 11 chrX 118893553 118893928 -43706002 - THE1C LTR MaLR 0 375 1 2100 205 37 120 chrX 118893928 118894581 -43705349 + L1MC4a LINE L1 7253 7808 0 1321 57 69 0 chrX 118895806 118895981 -43703949 + AluY SINE Alu 1 187 -124 1117 97 0 0 chrX 118896161 118896306 -43703624 - AluSq/x SINE Alu -167 145 1 30 27 0 0 chrX 118896884 118896921 -43703009 + AT_rich Low_complexity Low_complexity 1 37 0 27 73 0 0 chrX 118897980 118898035 -43701895 + AT_rich Low_complexity Low_complexity 1 55 0 4336 106 9 3 chrX 118898842 118899476 -43700454 - L1PA11 LINE L1 -2 6172 5535 1129 201 180 21 chrX 118899609 118900037 -43699893 - LTR54B LTR ERV1 -2 496 1 2738 118 14 132 chrX 118900054 118900546 -43699384 - Tigger2 DNA MER2_type 0 2718 1 24 32 0 0 chrX 118901395 118901426 -43698504 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chrX 118901508 118901537 -43698393 + AT_rich Low_complexity Low_complexity 1 29 0 200 98 73 0 chrX 118903513 118903554 -43696376 + (TATAA)n Simple_repeat Simple_repeat 5 48 0 1054 87 0 0 chrX 118904189 118904327 -43695603 + AluSc SINE Alu 142 279 -30 530 335 37 0 chrX 118904397 118904588 -43695342 - MIR SINE MIR -1 261 64 970 119 7 14 chrX 118904589 118904732 -43695198 + AluSq/x SINE Alu 2 143 -170 2230 106 3 7 chrX 118904744 118905046 -43694884 + AluSq SINE Alu 1 301 -12 22 56 0 0 chrX 118905332 118905368 -43694562 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chrX 118905702 118905724 -43694206 + AT_rich Low_complexity Low_complexity 1 22 0 952 185 11 26 chrX 118906841 118907030 -43692900 + AluJo SINE Alu 107 292 -20 244 262 155 29 chrX 118907142 118907245 -43692685 + MIR SINE MIR 75 190 -72 22 35 0 0 chrX 118908543 118908572 -43691358 + AT_rich Low_complexity Low_complexity 1 29 0 308 335 82 18 chrX 118909308 118909478 -43690452 - MIR SINE MIR -59 203 23 2336 109 0 0 chrX 118910488 118910800 -43689130 - AluSq SINE Alu -1 312 1 251 356 73 35 chrX 118911633 118911976 -43687954 - L2 LINE L2 -375 2939 2584 270 0 0 0 chrX 118912901 118912931 -43686999 + (CA)n Simple_repeat Simple_repeat 2 31 0 36 0 0 0 chrX 118913887 118913923 -43686007 + AT_rich Low_complexity Low_complexity 1 36 0 1844 160 0 0 chrX 118913923 118914205 -43685725 - AluSx SINE Alu -30 282 1 222 287 250 19 chrX 118914361 118914469 -43685461 - MIR3 SINE MIR -71 137 5 2918 176 15 6 chrX 118914911 118915446 -43684484 - MER34 LTR ERV1 -2 540 1 22 35 0 0 chrX 118915485 118915514 -43684416 + AT_rich Low_complexity Low_complexity 1 29 0 442 319 67 19 chrX 118915748 118915958 -43683972 - L3b LINE CR1 -162 1421 1202 258 287 191 0 chrX 118916031 118916125 -43683805 - MIR SINE MIR -87 175 64 21 0 0 0 chrX 118916963 118916984 -43682946 + AT_rich Low_complexity Low_complexity 1 21 0 1943 118 22 50 chrX 118918128 118918449 -43681481 + AluSx SINE Alu 1 312 0 27 49 0 0 chrX 118918662 118918703 -43681227 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chrX 118918777 118918812 -43681118 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chrX 118919741 118919775 -43680155 + AT_rich Low_complexity Low_complexity 1 34 0 191 316 158 0 chrX 118920333 118920409 -43679521 - MIR3 SINE MIR -2 206 119 42 20 0 0 chrX 118921295 118921344 -43678586 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chrX 118921546 118921571 -43678359 + AT_rich Low_complexity Low_complexity 1 25 0 21 95 0 0 chrX 118922133 118922196 -43677734 + AT_rich Low_complexity Low_complexity 1 63 0 2379 103 0 0 chrX 118922664 118922975 -43676955 + AluSx SINE Alu 1 311 -1 5311 108 16 4 chrX 118923469 118923823 -43676107 - L1PB1 LINE L1 -5 6146 5798 285 98 0 0 chrX 118923823 118923864 -43676066 + (TA)n Simple_repeat Simple_repeat 2 42 0 5311 108 16 4 chrX 118923864 118924281 -43675649 - L1PB1 LINE L1 -353 5798 5366 251 270 87 52 chrX 118925649 118925764 -43674166 - MIR SINE MIR -71 191 73 273 224 0 0 chrX 118926234 118926292 -43673638 - L2 LINE L2 -1 3312 3255 338 193 24 36 chrX 118927491 118927574 -43672356 - L2 LINE L2 -5 3308 3227 1137 189 18 9 chrX 118928139 118928356 -43671574 - MER20 DNA MER1_type 0 219 1 1978 105 3 21 chrX 118929093 118929378 -43670552 - AluSq SINE Alu -31 282 3 23 0 0 0 chrX 118929495 118929518 -43670412 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 118930131 118930166 -43669764 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chrX 118930228 118930257 -43669673 + AT_rich Low_complexity Low_complexity 1 29 0 2077 234 50 7 chrX 118932363 118932892 -43667038 - MLT1E2 LTR MaLR -1 625 92 336 64 0 0 chrX 118933012 118933059 -43666871 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chrX 118933142 118933171 -43666759 + AT_rich Low_complexity Low_complexity 1 29 0 494 340 140 0 chrX 118933864 118934135 -43665795 + L2 LINE L2 3005 3313 0 21 0 0 0 chrX 118934805 118934826 -43665104 + AT_rich Low_complexity Low_complexity 1 21 0 43904 37 2 1 chrX 118935147 118941290 -43658640 + L1PA3 LINE L1 9 6152 -3 669 195 0 8 chrX 118941837 118941965 -43657965 + FRAM SINE Alu 1 121 -55 207 0 0 0 chrX 118941972 118941995 -43657935 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 187 245 38 19 chrX 118942339 118942392 -43657538 + L2 LINE L2 2392 2445 -869 230 296 37 28 chrX 118942844 118942962 -43656968 - MIR SINE MIR -71 137 20 1403 200 0 25 chrX 118943087 118943367 -43656563 + AluJo SINE Alu 1 273 -39 228 292 14 28 chrX 118943700 118943844 -43656086 - L1M4 LINE L1 -3677 2469 2328 191 261 0 11 chrX 118944275 118944367 -43655563 + CT-rich Low_complexity Low_complexity 4 94 0 326 294 32 40 chrX 118944588 118944714 -43655216 + MIR3 SINE MIR 30 154 -54 694 180 0 0 chrX 118944719 118944841 -43655089 + FLAM_A SINE Alu 6 127 -15 409 280 51 8 chrX 118946068 118946186 -43653744 + L2 LINE L2 3190 3312 -1 202 291 0 0 chrX 118946369 118946424 -43653506 + L2 LINE L2 3208 3262 -10 353 224 159 54 chrX 118947666 118947943 -43651987 - L1MC5 LINE L1 -45 7916 7611 225 178 0 0 chrX 118948415 118948460 -43651470 + (CA)n Simple_repeat Simple_repeat 2 46 0 433 276 129 18 chrX 118949297 118949467 -43650463 - MIR3 SINE MIR -11 197 9 808 246 35 26 chrX 118950323 118950551 -43649379 + L2 LINE L2 3083 3312 -1 1789 158 21 3 chrX 118951649 118951934 -43647996 - AluJb SINE Alu -16 296 7 894 167 28 70 chrX 118952573 118952788 -43647142 - AluJb SINE Alu 0 312 107 23 33 0 0 chrX 118952805 118952835 -43647095 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 118953462 118953485 -43646445 + AT_rich Low_complexity Low_complexity 1 23 0 448 29 50 65 chrX 118953485 118953624 -43646306 + (TATAA)n Simple_repeat Simple_repeat 5 141 0 42151 37 22 1 chrX 118955079 118961095 -43638835 - L1PA2 LINE L1 0 6155 12 22 80 0 0 chrX 118962716 118962766 -43637164 + AT_rich Low_complexity Low_complexity 1 50 0 406 262 172 0 chrX 118963846 118963991 -43635939 - MIR SINE MIR -8 254 85 803 250 30 56 chrX 118965409 118965677 -43634253 + MIR SINE MIR 2 262 0 264 149 0 0 chrX 118965719 118965766 -43634164 + (ATG)n Simple_repeat Simple_repeat 2 48 0 2076 103 10 13 chrX 118967689 118967990 -43631940 + AluSx SINE Alu 1 300 -12 415 323 82 78 chrX 118968449 118969123 -43630807 + HAL1b LINE L1 22 417 -931 201 94 0 0 chrX 118969128 118969160 -43630770 + (A)n Simple_repeat Simple_repeat 1 32 0 709 228 66 48 chrX 118969191 118969419 -43630511 + L1ME1 LINE L1 5914 6145 -21 25 0 0 0 chrX 118969427 118969452 -43630478 + AT_rich Low_complexity Low_complexity 1 25 0 1734 143 0 41 chrX 118969579 118969926 -43630004 + AluSx SINE Alu 1 335 0 2305 82 7 3 chrX 118970393 118970697 -43629233 + AluY SINE Alu 1 305 -6 533 298 105 57 chrX 118970895 118971776 -43628154 + L1MC4a LINE L1 2269 3261 -2885 2016 125 26 3 chrX 118971776 118972079 -43627851 - AluSx SINE Alu 0 312 3 533 298 105 57 chrX 118972079 118972610 -43627320 + L1MC4a LINE L1 3261 3765 -2381 1599 156 61 45 chrX 118972614 118972993 -43626937 + L1MA9 LINE L1 5925 6309 -3 2064 68 4 7 chrX 118973088 118973366 -43626564 + L1PA8 LINE L1 5882 6158 -14 42 77 0 0 chrX 118973505 118973596 -43626334 + AT_rich Low_complexity Low_complexity 1 91 0 546 303 71 30 chrX 118973596 118974032 -43625898 + L1MC4a LINE L1 3884 4337 -1809 207 100 0 0 chrX 118974167 118974197 -43625733 + (TAA)n Simple_repeat Simple_repeat 3 32 0 270 253 41 20 chrX 118974227 118974361 -43625569 + L1MC4a LINE L1 5209 5347 -801 21 0 0 0 chrX 118974364 118974385 -43625545 + AT_rich Low_complexity Low_complexity 1 21 0 1690 152 7 11 chrX 118974385 118974668 -43625262 + AluJb SINE Alu 1 282 -30 237 212 30 0 chrX 118974680 118974746 -43625184 + (TA)n Simple_repeat Simple_repeat 2 69 0 1280 279 42 15 chrX 118974746 118975226 -43624704 + L1MC4a LINE L1 5357 5849 -1959 1164 245 105 112 chrX 118975214 118975603 -43624327 + L1MC4a LINE L1 6194 6584 -1224 * 186 43 0 0 chrX 118975603 118975626 -43624304 + (CTAG)n Simple_repeat Simple_repeat 2 24 0 1164 245 105 112 chrX 118975626 118975800 -43624130 + L1MC4a LINE L1 6584 6753 -1055 2214 88 9 31 chrX 118975800 118976117 -43623813 + AluSg SINE Alu 1 310 0 1164 245 105 112 chrX 118976117 118976275 -43623655 + L1MC4a LINE L1 6753 6911 -897 280 333 42 21 chrX 118976288 118976477 -43623453 + L1ME LINE L1 2 194 -5876 327 340 76 50 chrX 118976648 118976910 -43623020 + L1ME LINE L1 185 453 -5617 469 299 71 58 chrX 118976922 118977303 -43622627 + L1ME LINE L1 373 758 -5312 5168 10 0 0 chrX 118977322 118977908 -43622022 - L1HS LINE L1 0 6155 5570 316 8 8 0 chrX 118977907 118977949 -43621981 + L1P1 LINE L1 5535 5578 -583 * 1041 243 54 42 chrX 118978005 118978422 -43621508 + L1ME LINE L1 813 1240 -4840 768 228 43 5 chrX 118978432 118978662 -43621268 + L1ME2 LINE L1 5809 6015 -149 597 149 15 45 chrX 118978666 118978800 -43621130 + L1MA9 LINE L1 6177 6306 -6 1140 254 64 33 chrX 118978801 118979047 -43620883 + L1ME LINE L1 2893 3161 -2919 2332 70 7 0 chrX 118979047 118979345 -43620585 - AluY SINE Alu -11 300 1 1140 254 64 33 chrX 118979345 118979554 -43620376 + L1ME LINE L1 3161 3362 -2718 6750 110 36 9 chrX 118979614 118980705 -43619225 + L1MA2 LINE L1 5193 6304 0 2142 229 67 61 chrX 118980689 118981170 -43618760 + L1ME LINE L1 3397 3887 -2193 * 1657 164 0 36 chrX 118981170 118981297 -43618633 + AluJb SINE Alu 6 136 -176 2385 74 0 0 chrX 118981297 118981608 -43618322 + AluY SINE Alu 1 311 0 1657 164 0 36 chrX 118981608 118981784 -43618146 + AluJb SINE Alu 136 298 -14 2142 229 67 61 chrX 118981784 118982110 -43617820 + L1ME LINE L1 3887 4209 -1871 1380 219 128 111 chrX 118982112 118982637 -43617293 + MLT1E LTR MaLR 5 589 -4 3694 220 56 11 chrX 118982640 118983722 -43616208 + L1ME LINE L1 4202 5332 -748 1992 133 6 22 chrX 118983762 118984078 -43615852 + AluJb SINE Alu 2 312 0 267 308 31 0 chrX 118984192 118984257 -43615673 - L2 LINE L2 -218 3054 2988 233 29 29 0 chrX 118984293 118984327 -43615603 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 752 286 41 20 chrX 118985118 118985363 -43614567 - MIR SINE MIR 0 262 13 418 132 13 0 chrX 118985674 118985750 -43614180 - FLAM_C SINE Alu -3 140 64 359 229 105 19 chrX 118985802 118985907 -43614023 - L2 LINE L2 -2 3311 3198 259 257 43 71 chrX 118985924 118985994 -43613936 - MIR SINE MIR -158 104 37 787 239 43 43 chrX 118987531 118987786 -43612144 + L1MD1 LINE L1 27 281 -6259 320 264 0 0 chrX 118987887 118987959 -43611971 + L1MD1 LINE L1 4451 4522 -2018 447 83 0 0 chrX 118987959 118988019 -43611911 + MLT1D LTR MaLR 446 505 0 3309 235 76 23 chrX 118988038 118988442 -43611488 + L1MD1 LINE L1 4527 4908 -1705 2450 113 26 5 chrX 118988442 118988822 -43611108 - MLT1B LTR MaLR -2 388 1 3309 235 76 23 chrX 118988822 118989486 -43610444 + L1MD1 LINE L1 4908 5675 -938 1456 222 72 60 chrX 118989486 118989552 -43610378 - MLT1D LTR MaLR 0 505 441 2337 93 0 0 chrX 118989552 118989852 -43610078 + AluSq SINE Alu 1 300 -13 1456 222 72 60 chrX 118989852 118990284 -43609646 - MLT1D LTR MaLR -64 441 1 3309 235 76 23 chrX 118990284 118990453 -43609477 + L1MD1 LINE L1 5675 5834 -779 1202 207 9 4 chrX 118990478 118990710 -43609220 + AluJo SINE Alu 56 288 -24 4391 148 35 8 chrX 118990730 118991522 -43608408 + L1MD1 LINE L1 5823 6636 0 244 281 146 0 chrX 118991556 118991645 -43608285 - L1MC5 LINE L1 -1161 6800 6699 199 130 37 0 chrX 118992007 118992061 -43607869 + A-rich Low_complexity Low_complexity 2 57 0 243 61 0 0 chrX 118992553 118992586 -43607344 + (CA)n Simple_repeat Simple_repeat 2 34 0 1558 181 14 10 chrX 118992874 118993167 -43606763 + AluJo SINE Alu 1 294 -18 227 117 133 50 chrX 118994531 118994591 -43605339 - L2 LINE L2 -66 3247 3183 1878 150 0 19 chrX 118995110 118995417 -43604513 - AluJo SINE Alu -11 301 1 521 336 11 48 chrX 118996099 118996367 -43603563 - MIR SINE MIR 0 262 5 183 42 0 0 chrX 118996449 118996473 -43603457 + (TC)n Simple_repeat Simple_repeat 2 25 0 256 300 0 0 chrX 118996493 118996583 -43603347 + L1MC4 LINE L1 6614 6703 -1339 256 300 0 0 chrX 118996583 118996673 -43603257 + L1MC4 LINE L1 6614 6703 -1339 246 303 0 0 chrX 118996624 118996713 -43603217 - L1MC4 LINE L1 -1340 6702 6614 * 197 192 0 19 chrX 118996714 118996766 -43603164 + (TA)n Simple_repeat Simple_repeat 1 51 0 2355 90 3 6 chrX 118998831 118999143 -43600787 + AluSp SINE Alu 1 311 -2 259 235 37 49 chrX 118999286 118999367 -43600563 - MIR SINE MIR 0 262 183 582 254 23 0 chrX 118999580 118999883 -43600047 - FLAM_C SINE Alu 0 306 1 295 189 342 9 chrX 119000053 119000164 -43599766 - MIR SINE MIR -1 261 114 207 0 0 0 chrX 119000306 119000329 -43599601 + (CAA)n Simple_repeat Simple_repeat 2 24 0 265 325 116 23 chrX 119000634 119000891 -43599039 + L3 LINE CR1 1218 1572 -5 236 154 48 48 chrX 119002379 119002483 -43597447 + (TAAA)n Simple_repeat Simple_repeat 2 105 0 225 94 0 0 chrX 119003215 119003247 -43596683 + (TATAA)n Simple_repeat Simple_repeat 4 35 0 23 33 0 0 chrX 119004082 119004112 -43595818 + AT_rich Low_complexity Low_complexity 1 30 0 242 111 0 0 chrX 119004115 119004151 -43595779 - L1M4c LINE L1 -4322 2503 2468 674 151 8 0 chrX 119004172 119004298 -43595632 - L1MB7 LINE L1 -19 6165 6039 2919 219 49 62 chrX 119004315 119005500 -43594430 - L1M4c LINE L1 -4342 2483 1096 2157 138 0 0 chrX 119005500 119005811 -43594119 - AluSx SINE Alu 0 312 2 2919 219 49 62 chrX 119005811 119006034 -43593896 - L1M4c LINE L1 -5729 1096 872 1585 286 72 46 chrX 119006101 119006909 -43593021 - L1M4c LINE L1 -5674 868 40 405 318 71 18 chrX 119007611 119007781 -43592149 + MIR3 SINE MIR 23 201 -7 212 346 50 20 chrX 119008755 119008856 -43591074 - L2 LINE L2 -15 3257 3154 252 274 16 16 chrX 119012039 119012101 -43587829 - L2 LINE L2 -11 3302 3241 23 0 0 0 chrX 119012148 119012171 -43587759 + AT_rich Low_complexity Low_complexity 1 23 0 2075 97 0 0 chrX 119012283 119012550 -43587380 - AluSx SINE Alu -24 288 22 238 250 29 19 chrX 119014187 119014291 -43585639 - HSMAR1 DNA Mariner -1 1286 1182 252 184 0 0 chrX 119014606 119014655 -43585275 + (TG)n Simple_repeat Simple_repeat 2 50 0 1377 148 5 0 chrX 119014760 119014969 -43584961 - MER2 DNA MER2_type -135 210 1 297 208 72 16 chrX 119015794 119015919 -43584011 + L1ME LINE L1 1379 1510 -5020 1430 207 0 32 chrX 119015919 119016204 -43583726 + AluJo SINE Alu 1 276 -36 1877 170 0 0 chrX 119016223 119016511 -43583419 - AluJo SINE Alu -20 292 5 732 308 86 16 chrX 119016560 119017108 -43582822 + L1ME LINE L1 1550 2135 -4586 1696 177 3 7 chrX 119017156 119017444 -43582486 + AluJo SINE Alu 5 291 -21 22 0 0 0 chrX 119017614 119017636 -43582294 + AT_rich Low_complexity Low_complexity 1 22 0 263 231 110 23 chrX 119017702 119017875 -43582055 + L1ME LINE L1 2419 2606 -3934 190 130 0 43 chrX 119017875 119017921 -43582009 + (TAAAA)n Simple_repeat Simple_repeat 3 46 0 1748 286 78 21 chrX 119017921 119019085 -43580845 + L1ME LINE L1 2598 3828 -2712 1595 204 99 30 chrX 119019090 119019354 -43580576 - MLT1C LTR MaLR -5 462 155 2336 35 32 0 chrX 119019354 119019636 -43580294 - AluY SINE Alu -20 291 1 1595 204 99 30 chrX 119019636 119019803 -43580127 - MLT1C LTR MaLR -312 155 1 400 279 107 75 chrX 119019803 119020216 -43579714 + L1ME LINE L1 3824 4249 -2291 1227 265 46 81 chrX 119020241 119021135 -43578795 + L1ME LINE L1 5270 6134 -422 256 329 73 58 chrX 119021199 119021336 -43578594 - MIR SINE MIR -121 141 3 311 205 26 0 chrX 119021379 119021457 -43578473 - MER116 DNA Mariner 0 80 1 221 18 55 73 chrX 119021576 119021631 -43578299 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2583 44 0 13 chrX 119022383 119022698 -43577232 + AluY SINE Alu 1 311 0 2115 114 3 7 chrX 119022973 119023279 -43576651 - AluSq SINE Alu -8 305 1 1753 184 0 3 chrX 119023376 119023664 -43576266 - AluJb SINE Alu -23 289 3 390 187 24 157 chrX 119024463 119024629 -43575301 + MIR SINE MIR 119 262 0 477 200 0 0 chrX 119025648 119025743 -43574187 + AluSg/x SINE Alu 213 307 -2 216 0 0 0 chrX 119026348 119026372 -43573558 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 260 326 23 12 chrX 119026385 119026471 -43573459 - L2 LINE L2 -50 3222 3136 252 59 0 0 chrX 119026476 119026510 -43573420 + (CA)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chrX 119026531 119026554 -43573376 + AT_rich Low_complexity Low_complexity 1 23 0 6391 87 12 21 chrX 119026834 119027921 -43572009 - L1PA10 LINE L1 -1 6167 5072 253 381 25 25 chrX 119028338 119028456 -43571474 + MIR SINE MIR 18 135 -73 213 39 0 0 chrX 119028456 119028482 -43571448 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 560 271 87 37 chrX 119028484 119028702 -43571228 - L2 LINE L2 -8 3305 3077 7343 32 19 0 chrX 119029096 119030518 -43569412 - L1PA4 LINE L1 -3 6152 4718 2771 175 19 94 chrX 119231276 119231720 -43368210 - L1MB1 LINE L1 0 6168 5791 2279 92 3 3 chrX 119231720 119232023 -43367907 - AluSp SINE Alu -10 303 1 2771 175 19 94 chrX 119232023 119232258 -43367672 - L1MB1 LINE L1 -377 5791 5540 1590 179 40 20 chrX 119232358 119232623 -43367307 - L1MB1 LINE L1 -113 6055 5780 203 88 29 0 chrX 119232623 119232657 -43367273 + (TA)n Simple_repeat Simple_repeat 1 35 0 1590 179 40 20 chrX 119232657 119232737 -43367193 - L1MB1 LINE L1 -388 5780 5703 * 6602 229 20 76 chrX 119232727 119235166 -43364764 - L1MB1 LINE L1 -721 5447 3141 844 165 50 25 chrX 119236400 119236557 -43363373 - L1MA8 LINE L1 -22 6269 6117 198 0 0 0 chrX 119236557 119236579 -43363351 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4986 18 0 0 chrX 119236579 119237148 -43362782 - L1PA3 LINE L1 -18 6137 5569 844 165 50 25 chrX 119237148 119237189 -43362741 - L1MA8 LINE L1 -173 6118 6065 2243 141 3 18 chrX 119237190 119237531 -43362399 + MER1B DNA MER1_type 1 336 -3 2451 137 34 27 chrX 119237532 119237978 -43361952 - L1MA6 LINE L1 -218 6082 5634 589 144 14 0 chrX 119238300 119238446 -43361484 + (TG)n Simple_repeat Simple_repeat 2 149 0 260 109 0 91 chrX 119239434 119239489 -43360441 + MADE1 DNA Mariner 1 50 -30 314 137 0 0 chrX 119239489 119239540 -43360390 + MADE1 DNA Mariner 28 78 -2 228 327 93 9 chrX 119239597 119239704 -43360226 + MIR SINE MIR 22 137 -71 871 48 44 17 chrX 119240008 119240413 -43359517 + (TA)n Simple_repeat Simple_repeat 1 415 0 530 273 57 16 chrX 119240425 119240619 -43359311 + MIR SINE MIR 61 262 0 273 273 204 8 chrX 119240740 119240872 -43359058 - MLT1H LTR MaLR -3 546 389 1069 234 0 0 chrX 119240958 119241159 -43358771 + MER58A DNA MER1_type 24 224 0 895 230 75 0 chrX 119241514 119241714 -43358216 - MER58A DNA MER1_type -1 223 9 290 322 33 0 chrX 119241722 119241812 -43358118 - MIR SINE MIR -128 134 42 841 272 43 36 chrX 119241821 119242122 -43357808 + MER102b DNA MER1_type 35 337 -4 205 266 18 115 chrX 119242894 119243007 -43356923 + L2 LINE L2 2776 2877 -437 818 165 0 15 chrX 119243294 119243427 -43356503 - FLAM_C SINE Alu 0 133 3 280 213 16 0 chrX 119244091 119244152 -43355778 - MIR SINE MIR -135 127 66 717 265 19 71 chrX 119244712 119244980 -43354950 - MIR SINE MIR -6 256 3 21 0 0 0 chrX 119246863 119246884 -43353046 + AT_rich Low_complexity Low_complexity 1 21 0 789 142 47 53 chrX 119247525 119247715 -43352215 + MER53 DNA DNA 1 189 0 29 78 0 0 chrX 119248020 119248084 -43351846 + AT_rich Low_complexity Low_complexity 1 64 0 245 299 0 46 chrX 119248212 119248299 -43351631 + L2 LINE L2 3231 3313 0 563 307 26 16 chrX 119248330 119248522 -43351408 - MIR SINE MIR -4 258 65 653 352 56 34 chrX 119249085 119249639 -43350291 - L2 LINE L2 -10 3262 2702 327 341 79 69 chrX 119249670 119249848 -43350082 + L1ME3A LINE L1 254 429 -5943 2292 97 0 0 chrX 119249848 119250147 -43349783 + AluSg1 SINE Alu 3 301 -8 327 341 79 69 chrX 119250147 119250346 -43349584 + L1ME3A LINE L1 429 635 -5737 2016 263 54 31 chrX 119250415 119251376 -43348554 + L1ME LINE L1 42 1322 -4679 2003 115 59 36 chrX 119251641 119251997 -43347933 + THE1B LTR MaLR 1 364 0 348 262 69 77 chrX 119251997 119252359 -43347571 + L1ME3A LINE L1 983 1341 -5031 240 335 129 6 chrX 119252405 119252575 -43347355 + L1ME3A LINE L1 1552 1742 -4642 827 220 23 6 chrX 119252679 119252856 -43347074 - MLT1G LTR MaLR 0 590 411 316 353 41 12 chrX 119253033 119253203 -43346727 - MLT1H1 LTR MaLR -350 205 31 681 294 53 18 chrX 119253372 119253897 -43346033 + L1ME3A LINE L1 2175 2682 -3700 401 295 53 9 chrX 119253903 119254183 -43345747 + L1ME3A LINE L1 3433 3730 -2652 274 315 68 16 chrX 119254292 119254528 -43345402 + MLT1J2 LTR MaLR 16 254 -192 908 272 67 60 chrX 119254726 119255068 -43344862 + L1ME3A LINE L1 5138 5476 -930 372 43 0 0 chrX 119255068 119255114 -43344816 + (CA)n Simple_repeat Simple_repeat 1 46 0 908 272 67 60 chrX 119255114 119255393 -43344537 + L1ME3A LINE L1 5476 5752 -654 1650 170 8 102 chrX 119255393 119255794 -43344136 + MLT1A1 LTR MaLR 1 363 -2 908 272 67 60 chrX 119255794 119255944 -43343986 + L1ME3A LINE L1 5752 5899 -507 1766 212 38 36 chrX 119255944 119256448 -43343482 + Charlie4a DNA MER1_type 2 506 -2 908 272 67 60 chrX 119256448 119256708 -43343222 + L1ME3A LINE L1 5899 6181 -225 309 210 0 0 chrX 119256886 119256948 -43342982 - MLT1A1 LTR MaLR 0 374 313 4960 85 6 0 chrX 119257048 119257718 -43342212 + L1PA10 LINE L1 5483 6156 -12 627 147 0 188 chrX 119257719 119257799 -43342131 + L1 LINE L1 5004 5027 -1119 1543 176 3 61 chrX 119257799 119258111 -43341819 + AluJb SINE Alu 13 306 -6 627 147 0 188 chrX 119258111 119258227 -43341703 + L1 LINE L1 5027 5163 -983 999 250 5 5 chrX 119258327 119258551 -43341379 - MLT1A1 LTR MaLR -132 233 10 417 308 185 23 chrX 119258643 119258994 -43340936 - L2 LINE L2 -619 2695 2288 186 43 0 0 chrX 119259087 119259110 -43340820 + (A)n Simple_repeat Simple_repeat 1 23 0 285 148 0 0 chrX 119259286 119259340 -43340590 - L1MA7 LINE L1 -4 6287 6234 41 0 0 0 chrX 119259367 119259408 -43340522 + AT_rich Low_complexity Low_complexity 1 41 0 609 230 112 87 chrX 119259417 119259773 -43340157 - L1ME1 LINE L1 -3 6163 5799 1011 167 149 19 chrX 119259777 119260046 -43339884 - L1MA7 LINE L1 -51 6240 5937 336 316 53 43 chrX 119260216 119260403 -43339527 - MIR SINE MIR -54 208 20 2295 84 0 7 chrX 119261864 119262160 -43337770 + AluSx SINE Alu 1 294 -18 939 246 196 19 chrX 119262818 119263135 -43336795 + MER69 DNA AcHobo 147 519 -2007 345 214 40 64 chrX 119263161 119263334 -43336596 + MER69 DNA AcHobo 2011 2179 -347 26 0 0 0 chrX 119263998 119264024 -43335906 + AT_rich Low_complexity Low_complexity 1 26 0 1718 151 3 24 chrX 119265065 119265357 -43334573 + AluJb SINE Alu 1 286 -26 303 219 38 9 chrX 119265357 119265462 -43334468 + (TA)n Simple_repeat Simple_repeat 1 108 0 2283 132 73 25 chrX 119265463 119265753 -43334177 - L1M2 LINE L1 -524 5788 5468 1744 121 99 4 chrX 119265753 119266025 -43333905 - AluSg SINE Alu -12 298 1 2283 132 73 25 chrX 119266025 119266173 -43333757 - L1M2 LINE L1 -844 5468 5329 1979 177 71 9 chrX 119266155 119266608 -43333322 + L1MA9 LINE L1 5795 6275 -37 * 822 205 42 144 chrX 119268196 119268536 -43331394 - LTR37B LTR ERV1 0 468 198 195 42 0 0 chrX 119268536 119268560 -43331370 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 822 205 42 144 chrX 119268560 119268740 -43331190 - LTR37B LTR ERV1 -270 198 1 271 318 84 19 chrX 119269279 119269386 -43330544 + L2 LINE L2 3196 3309 -4 460 152 9 9 chrX 119269566 119269671 -43330259 + CT-rich Low_complexity Low_complexity 3 107 0 192 111 0 0 chrX 119270132 119270168 -43329762 + (A)n Simple_repeat Simple_repeat 1 36 0 2040 114 3 10 chrX 119270206 119270522 -43329408 - AluSx SINE Alu 0 312 1 529 295 84 76 chrX 119270572 119270942 -43328988 + MLT1I LTR MaLR 34 406 -3 21 36 0 0 chrX 119271556 119271584 -43328346 + AT_rich Low_complexity Low_complexity 1 28 0 3220 216 19 55 chrX 119272878 119273216 -43326714 - L1ME1 LINE L1 -9 6157 5809 1276 124 21 0 chrX 119273216 119273444 -43326486 + L1PA7 LINE L1 5939 6170 0 3220 216 19 55 chrX 119273444 119273982 -43325948 - L1ME1 LINE L1 -357 5809 5311 1214 224 116 0 chrX 119274015 119274274 -43325656 + AluJo SINE Alu 2 290 -12 388 209 132 11 chrX 119274386 119274477 -43325453 - L1M4 LINE L1 -6439 103 2 1620 290 25 43 chrX 119274585 119275229 -43324701 + L1MCc LINE L1 696 1327 -5096 3986 269 52 27 chrX 119275230 119278055 -43321875 + L1MCc LINE L1 1585 4441 -2500 1525 237 30 22 chrX 119278170 119278871 -43321059 + L1M3 LINE L1 2090 2802 -3580 * 2233 250 38 30 chrX 119278867 119279624 -43320306 + L1M3 LINE L1 3589 4351 -2031 238 136 0 0 chrX 119279646 119279690 -43320240 - L1MA3 LINE L1 0 6305 6262 4440 219 32 22 chrX 119279696 119280010 -43319920 + L1M3 LINE L1 4338 4647 -1772 488 121 0 0 chrX 119280010 119280091 -43319839 + L1MA4 LINE L1 6212 6294 -6 4440 219 32 22 chrX 119280091 119281437 -43318493 + L1M3 LINE L1 4647 6012 -407 992 178 35 151 chrX 119281429 119281584 -43318346 + L1M4 LINE L1 2600 2771 -3375 * 454 17 0 17 chrX 119281584 119281643 -43318287 - AluY SINE Alu -17 295 238 992 178 35 151 chrX 119281643 119281827 -43318103 + L1M4 LINE L1 2771 2951 -3195 307 247 0 0 chrX 119281827 119281908 -43318022 + L1M4 LINE L1 2917 2997 -3149 2219 128 44 0 chrX 119281910 119282254 -43317676 - MER47A DNA MER2_type -1 365 7 420 243 7 13 chrX 119282261 119282413 -43317517 + L1M4 LINE L1 3025 3175 -2971 317 279 0 0 chrX 119282478 119282564 -43317366 + L1M4 LINE L1 3811 3896 -2250 1649 209 46 27 chrX 119282567 119282940 -43316990 + MSTD LTR MaLR 5 384 -12 3579 226 33 7 chrX 119282955 119283898 -43316032 + L1M4 LINE L1 3876 4842 -1304 1771 229 77 10 chrX 119284017 119284432 -43315498 + MER77 LTR ERV1 163 605 0 2343 212 34 22 chrX 119284434 119285403 -43314527 + L1M4 LINE L1 4836 5812 -372 25991 30 7 2 chrX 119285503 119288677 -43311253 - L1P LINE L1 -803 5343 2153 463 121 0 0 chrX 119288679 119288745 -43311185 - L1MA6 LINE L1 -351 5949 5884 * 3288 258 53 30 chrX 119288737 119290637 -43309293 - L1 LINE L1 -3626 3939 2049 309 242 62 108 chrX 119290685 119290879 -43309051 - L1 LINE L1 -6711 855 671 249 246 58 65 chrX 119291212 119291350 -43308580 - L1MDa LINE L1 -4881 1659 1523 187 330 113 0 chrX 119291756 119291862 -43308068 + L2 LINE L2 3196 3313 0 276 175 0 0 chrX 119293716 119293779 -43306151 + A-rich Low_complexity Low_complexity 1 63 0 1497 251 81 59 chrX 119293874 119294428 -43305502 - MLT1F1 LTR MaLR 0 567 1 1099 165 0 16 chrX 119295618 119295806 -43304124 + L1PB4 LINE L1 5968 6152 -4 266 121 17 0 chrX 119295817 119295875 -43304055 + L1MA4A LINE L1 6244 6302 -1 221 196 18 0 chrX 119296893 119296949 -43302981 + (TA)n Simple_repeat Simple_repeat 1 57 0 325 331 126 11 chrX 119297163 119297338 -43302592 - MIR3 SINE MIR -11 197 3 22 0 0 0 chrX 119297972 119297994 -43301936 + AT_rich Low_complexity Low_complexity 1 22 0 1996 143 0 9 chrX 119298709 119299024 -43300906 + AluSx SINE Alu 1 312 0 745 268 65 36 chrX 119299770 119300185 -43299745 - L1MC5 LINE L1 -23 7938 7512 4766 191 47 17 chrX 119300190 119301350 -43298580 - L1MD1 LINE L1 -5 6237 5033 321 118 0 0 chrX 119301350 119301401 -43298529 + (TA)n Simple_repeat Simple_repeat 2 52 0 4766 191 47 17 chrX 119301401 119301477 -43298453 - L1MD1 LINE L1 -1209 5033 4961 3529 208 64 28 chrX 119301595 119302390 -43297540 - L1MB7 LINE L1 -16 6168 5321 2302 65 14 0 chrX 119302390 119302684 -43297246 - AluY SINE Alu -13 298 1 3529 208 64 28 chrX 119302684 119302894 -43297036 - L1MB7 LINE L1 -863 5321 5120 1254 210 24 9 chrX 119302994 119303322 -43296608 - L1MB7 LINE L1 -2974 3172 2840 932 160 119 9 chrX 119304392 119304523 -43295407 - L1MA9 LINE L1 -5 6307 6192 246 32 0 0 chrX 119304523 119304554 -43295376 + (TG)n Simple_repeat Simple_repeat 2 32 0 932 160 119 9 chrX 119304554 119304641 -43295289 - L1MA9 LINE L1 -120 6192 6065 32 26 0 0 chrX 119305088 119305127 -43294803 + AT_rich Low_complexity Low_complexity 1 39 0 732 263 17 0 chrX 119305673 119305848 -43294082 + MER5B DNA MER1_type 1 178 0 2368 99 0 0 chrX 119306220 119306533 -43293397 + AluSq SINE Alu 1 313 0 9935 133 28 0 chrX 119306789 119308329 -43291601 + Tigger1 DNA MER2_type 1 1583 -835 2413 122 10 41 chrX 119308331 119308481 -43291449 - L1MA3 LINE L1 -469 5836 5683 1821 162 0 0 chrX 119308481 119308805 -43291125 + AluJb SINE Alu 1 324 0 2413 122 10 41 chrX 119308805 119309064 -43290866 - L1MA3 LINE L1 -622 5683 5439 1078 113 102 6 chrX 119309205 119309382 -43290548 + Tigger1 DNA MER2_type 2225 2418 0 210 239 0 84 chrX 119309835 119309977 -43289953 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 * 241 238 10 30 chrX 119309882 119309983 -43289947 + (TA)n Simple_repeat Simple_repeat 1 99 0 1728 163 22 37 chrX 119310235 119310590 -43289340 + L1MB8 LINE L1 5773 6122 -56 270 226 0 32 chrX 119310866 119310928 -43289002 + MIR SINE MIR 200 259 -3 221 150 0 0 chrX 119310931 119310971 -43288959 + (CAT)n Simple_repeat Simple_repeat 2 41 0 37 0 0 0 chrX 119311323 119311360 -43288570 + AT_rich Low_complexity Low_complexity 1 37 0 2241 65 3 7 chrX 119311360 119311650 -43288280 - AluSc SINE Alu -20 289 1 2318 157 47 5 chrX 119311777 119312185 -43287745 + MSTB LTR MaLR 2 426 0 37 0 0 0 chrX 119312590 119312627 -43287303 + AT_rich Low_complexity Low_complexity 1 37 0 6934 68 0 0 chrX 119312631 119313626 -43286304 - L1PA3 LINE L1 0 6155 5213 2009 20 0 0 chrX 119313626 119313868 -43286062 + L1PA3 LINE L1 4987 5228 -918 21 57 0 0 chrX 119313946 119313981 -43285949 + AT_rich Low_complexity Low_complexity 1 35 0 1981 144 3 3 chrX 119313981 119314279 -43285651 - AluSx SINE Alu -14 298 1 267 284 0 12 chrX 119314355 119314436 -43285494 - MER34-int LTR ERV1 -5185 1146 1067 916 251 94 87 chrX 119314472 119315061 -43284869 - MER34-int LTR ERV1 -4534 1412 357 301 271 62 62 chrX 119315061 119315190 -43284740 - MER34-int LTR ERV1 -6352 449 321 1302 237 24 96 chrX 119315356 119315888 -43284042 - MER34 LTR ERV1 -48 494 1 326 379 46 6 chrX 119316690 119316864 -43283066 + L2 LINE L2 1762 1942 -1372 3577 97 59 10 chrX 119317013 119317603 -43282327 + L1MA2 LINE L1 5686 6304 0 27 0 0 0 chrX 119317603 119317630 -43282300 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chrX 119317738 119317765 -43282165 + AT_rich Low_complexity Low_complexity 1 27 0 421 236 43 36 chrX 119317911 119318051 -43281879 - L1ME LINE L1 -351 5819 5679 2363 152 5 12 chrX 119318249 119318671 -43281259 + L1P LINE L1 4538 4956 -1190 536 247 19 13 chrX 119318771 119318925 -43281005 + L1PA11 LINE L1 4891 5045 -1101 * 2736 33 0 0 chrX 119318922 119319252 -43280678 - L1P2 LINE L1 -536 5619 5290 3652 23 9 0 chrX 119319252 119319684 -43280246 + L1PA4 LINE L1 5716 6152 -3 * 6294 81 21 15 chrX 119319679 119320814 -43279116 + L1PA11 LINE L1 5031 6171 -3 1204 214 19 36 chrX 119320828 119321137 -43278793 - L1MA9 LINE L1 -22 6290 5987 376 278 58 48 chrX 119321372 119321681 -43278249 - L1M4 LINE L1 -2380 3766 3455 2318 115 0 0 chrX 119321694 119322006 -43277924 - AluSx SINE Alu 0 312 1 501 284 67 84 chrX 119322064 119322480 -43277450 + MLT1J LTR MaLR 31 439 -72 492 253 78 54 chrX 119322682 119323054 -43276876 - L1M4 LINE L1 -2900 3246 2866 336 304 38 32 chrX 119323197 119323355 -43276575 - MIR SINE MIR 0 262 104 22 35 0 0 chrX 119323717 119323746 -43276184 + AT_rich Low_complexity Low_complexity 1 29 0 1346 230 32 3 chrX 119324042 119324351 -43275579 - MER63 DNA MER1_type -2 1058 741 2239 168 3 11 chrX 119324495 119324871 -43275059 - MLT1C LTR MaLR -92 375 3 249 33 0 0 chrX 119324981 119325011 -43274919 + (TG)n Simple_repeat Simple_repeat 2 31 0 1918 157 7 0 chrX 119325012 119325311 -43274619 - AluSx SINE Alu -11 301 1 1066 275 72 90 chrX 119325349 119326713 -43273217 - L1MC4a LINE L1 -1215 6662 5324 1376 193 7 4 chrX 119326939 119327208 -43272722 - AluJo SINE Alu -20 292 23 1368 116 10 0 chrX 119327300 119327507 -43272423 - L1MA4 LINE L1 -457 5843 5635 253 278 31 21 chrX 119327575 119327672 -43272258 - L1P LINE L1 -1146 5000 4903 329 265 51 83 chrX 119328110 119328363 -43271567 - L1MC4a LINE L1 -1746 4469 4225 24 0 0 0 chrX 119328363 119328387 -43271543 + AT_rich Low_complexity Low_complexity 1 24 0 * 2393 184 18 20 chrX 119328384 119328874 -43271056 - L1MA3 LINE L1 0 6305 5817 3407 171 15 21 chrX 119328394 119329055 -43270875 - L1MA4 LINE L1 -9 6291 5635 2706 152 36 8 chrX 119329055 119329769 -43270161 + L1MA4 LINE L1 4876 5608 -697 216 24 73 0 chrX 119329769 119329810 -43270120 + A-rich Low_complexity Low_complexity 2 45 0 2706 152 36 8 chrX 119329810 119329843 -43270087 + L1M1 LINE L1 5608 5639 -666 23 0 0 0 chrX 119330006 119330029 -43269901 + AT_rich Low_complexity Low_complexity 1 23 0 2113 135 0 0 chrX 119330029 119330325 -43269605 + AluSx SINE Alu 1 296 -16 440 290 118 46 chrX 119330329 119331325 -43268605 - L1MC4a LINE L1 -2199 4016 2949 23 68 0 0 chrX 119331334 119331378 -43268552 + AT_rich Low_complexity Low_complexity 1 44 0 321 334 47 59 chrX 119331759 119332163 -43267767 - L1MC4a LINE L1 -3885 2511 2113 3230 59 0 49 chrX 119332939 119333410 -43266520 - LTR7 LTR ERV1 -2 448 1 2614 63 45 13 chrX 119333410 119333790 -43266140 - HERVH LTR ERV1 0 7713 7322 1452 111 18 5 chrX 119333788 119334005 -43265925 - HERVH LTR ERV1 -1894 5819 5600 * 4228 148 3 1 chrX 119334006 119334667 -43265263 - HERVH LTR ERV1 -2564 5149 4488 3427 111 0 6 chrX 119334669 119335174 -43264756 - HERVH LTR ERV1 -3720 3993 3492 * 19601 96 64 31 chrX 119335164 119338347 -43261583 - HERVH LTR ERV1 -4423 3290 1 3383 62 2 7 chrX 119338349 119338799 -43261131 - LTR7 LTR ERV1 -2 448 1 264 59 0 0 chrX 119339893 119339927 -43260003 + (TG)n Simple_repeat Simple_repeat 1 34 0 1387 285 74 42 chrX 119340002 119340693 -43259237 - L1MC4a LINE L1 -5404 801 89 188 404 30 0 chrX 119340978 119341077 -43258853 + L2 LINE L2 2872 2973 -299 869 155 204 6 chrX 119343215 119343396 -43256534 + L1PA16 LINE L1 5946 6162 -4 562 278 42 21 chrX 119343398 119343589 -43256341 + MIR SINE MIR 62 256 -6 871 176 39 69 chrX 119344121 119344325 -43255605 + MER3 DNA MER1_type 4 201 -8 309 255 10 61 chrX 119344520 119344618 -43255312 + MIR SINE MIR 42 134 -74 404 285 35 14 chrX 119345397 119345541 -43254389 - MIR SINE MIR -69 193 47 21 57 0 0 chrX 119346852 119346887 -43253043 + AT_rich Low_complexity Low_complexity 1 35 0 477 280 39 28 chrX 119347016 119347198 -43252732 - MIR SINE MIR -25 237 54 21 57 0 0 chrX 119347372 119347407 -43252523 + AT_rich Low_complexity Low_complexity 1 35 0 2042 247 25 11 chrX 119347802 119348239 -43251691 + L1MB7 LINE L1 11 453 -6406 2630 228 93 24 chrX 119348352 119349286 -43250644 + L1MB7 LINE L1 663 2518 -4548 708 222 0 0 chrX 119349434 119349560 -43250370 + FLAM_A SINE Alu 1 126 -7 723 263 57 26 chrX 119349719 119350219 -43249711 + L1MB7 LINE L1 2718 3199 -3758 1232 162 0 39 chrX 119350219 119350448 -43249482 + AluSg/x SINE Alu 81 300 -12 330 210 5 0 chrX 119350452 119350553 -43249377 + L1MB7 LINE L1 5798 5900 -1057 2049 125 3 7 chrX 119350602 119350898 -43249032 - AluSx SINE Alu -17 295 1 3488 204 31 19 chrX 119351032 119352075 -43247855 + L1MB7 LINE L1 5859 6921 -74 4794 89 16 1 chrX 119352116 119352476 -43247454 - L1PB1 LINE L1 -1 6150 5774 378 0 0 0 chrX 119352476 119352518 -43247412 + (TA)n Simple_repeat Simple_repeat 1 42 0 4794 89 16 1 chrX 119352518 119352822 -43247108 - L1PB1 LINE L1 -377 5774 5476 5965 23 1 0 chrX 119352825 119353517 -43246413 - L1PA4 LINE L1 -3 6152 5460 2726 151 109 0 chrX 119353517 119354237 -43245693 + L1PA4 LINE L1 4654 5466 -689 * 4097 217 2 3 chrX 119354234 119355122 -43244808 - L1 LINE L1 -1968 4178 3292 332 164 14 0 chrX 119355140 119355213 -43244717 + L1MB7 LINE L1 6920 6993 -2 243 0 0 0 chrX 119356159 119356186 -43243744 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2682 107 16 0 chrX 119358639 119359022 -43240908 - L1PA10 LINE L1 -1 6167 5779 1990 133 10 3 chrX 119359712 119360005 -43239925 - AluSx SINE Alu -17 295 1 517 58 0 103 chrX 119360135 119360184 -43239746 - MADE1 DNA Mariner 0 80 42 2393 53 7 13 chrX 119360184 119360483 -43239447 + AluY SINE Alu 1 297 -14 517 58 0 103 chrX 119360483 119360520 -43239410 - MADE1 DNA Mariner -38 42 3 2804 319 53 9 chrX 119360835 119361990 -43237940 - ERVL LTR ERVL -1200 4564 3360 390 300 0 0 chrX 119363686 119363786 -43236144 - MIR SINE MIR -59 203 104 2079 118 13 10 chrX 119363944 119364249 -43235681 - AluSq SINE Alu -7 306 1 466 341 228 8 chrX 119367089 119367470 -43232460 + L3 LINE CR1 1026 1490 -87 5495 145 53 14 chrX 119367635 119368614 -43231316 + L1MB3 LINE L1 13 1029 -5355 5067 14 0 0 chrX 119368613 119369193 -43230737 - L1PA3 LINE L1 -293 5862 5283 * 2432 24 17 7 chrX 119369193 119369477 -43230453 + L1PA3 LINE L1 5857 6155 0 7425 167 27 35 chrX 119369479 119369847 -43230083 + L1MB3 LINE L1 1021 1390 -4992 2368 67 3 0 chrX 119369847 119370145 -43229785 + AluY SINE Alu 1 299 -12 7425 167 27 35 chrX 119370145 119370520 -43229410 + L1MB3 LINE L1 1390 1766 -4616 266 0 29 0 chrX 119370520 119370554 -43229376 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7425 167 27 35 chrX 119370554 119371712 -43228218 + L1MB3 LINE L1 1766 2911 -3471 3230 175 13 11 chrX 119371712 119372334 -43227596 + L1MB3 LINE L1 5795 6417 -2 7425 167 27 35 chrX 119372334 119372354 -43227576 + L1MB3 LINE L1 2911 2930 -3452 236 286 95 19 chrX 119372926 119373031 -43226899 - L2 LINE L2 -22 3291 3179 2041 76 23 94 chrX 119373127 119373469 -43226461 + AluYb8 SINE Alu 1 318 0 2487 147 11 5 chrX 119373694 119374137 -43225793 + L1PA10 LINE L1 4878 5323 -823 1389 155 56 21 chrX 119374139 119374423 -43225507 + L1PA10 LINE L1 5874 6167 -1 1850 212 59 0 chrX 119374503 119374876 -43225054 - MSTD LTR MaLR 0 396 2 349 315 87 87 chrX 119374907 119375090 -43224840 - L2 LINE L2 -610 2704 2522 2325 89 7 0 chrX 119375090 119375382 -43224548 + AluSx SINE Alu 6 299 -13 349 315 87 87 chrX 119375382 119375636 -43224294 - L2 LINE L2 -791 2523 2267 339 378 82 11 chrX 119375788 119376055 -43223875 - L3b LINE CR1 -8 1575 1290 1883 157 0 7 chrX 119376231 119376531 -43223399 + AluSq SINE Alu 1 298 -15 384 333 45 35 chrX 119377542 119377740 -43222190 + MIR SINE MIR 19 218 -44 24 0 0 0 chrX 119377746 119377770 -43222160 + AT_rich Low_complexity Low_complexity 1 24 0 1605 177 27 27 chrX 119378056 119378356 -43221574 + AluJb SINE Alu 1 300 -12 681 126 34 0 chrX 119378985 119379104 -43220826 - L1MA9 LINE L1 -1 6311 6189 2377 110 0 0 chrX 119379138 119379446 -43220484 + AluSx SINE Alu 1 308 -4 682 132 0 9 chrX 119379449 119379563 -43220367 + L1MB7 LINE L1 6060 6172 -12 2377 99 0 0 chrX 119379583 119379887 -43220043 + AluSx SINE Alu 1 304 -8 2000 162 0 3 chrX 119379893 119380202 -43219728 + AluJo SINE Alu 1 308 -4 341 189 42 0 chrX 119381635 119381730 -43218200 + L1M4c LINE L1 3073 3171 -3211 741 131 13 78 chrX 119381734 119381887 -43218043 + FLAM_C SINE Alu 1 143 0 8971 184 43 28 chrX 119381890 119382415 -43217515 + L1MA10 LINE L1 3156 3672 -2898 1678 198 0 0 chrX 119382415 119382708 -43217222 + AluSq SINE Alu 1 293 -20 2373 68 4 0 chrX 119382711 119382992 -43216938 + AluSp SINE Alu 17 298 -15 8971 184 43 28 chrX 119382992 119385824 -43214106 + L1MA10 LINE L1 3673 6569 -1 264 226 36 12 chrX 119387141 119387225 -43212705 + MARNA DNA Mariner 376 461 -125 479 165 0 0 chrX 119388201 119388280 -43211650 - Tigger5 DNA MER2_type -2244 79 1 447 338 46 59 chrX 119388548 119388767 -43211163 - L3 LINE CR1 -10 1567 1352 360 291 0 0 chrX 119388817 119388903 -43211027 - L2 LINE L2 -1 3312 3227 403 324 162 25 chrX 119388921 119389403 -43210527 - L3 LINE CR1 -280 1297 750 22 0 0 0 chrX 119390611 119390633 -43209297 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 119392033 119392061 -43207869 + AT_rich Low_complexity Low_complexity 1 28 0 225 246 49 0 chrX 119392670 119392731 -43207199 - MIR SINE MIR -63 145 82 288 0 0 0 chrX 119393795 119393827 -43206103 + (TG)n Simple_repeat Simple_repeat 2 33 0 192 40 0 0 chrX 119394583 119394608 -43205322 + (CAGCG)n Simple_repeat Simple_repeat 3 27 0 233 263 0 26 chrX 119396854 119396930 -43203000 - MIR SINE MIR -59 203 130 732 245 101 17 chrX 119398891 119399128 -43200802 - MIR SINE MIR 0 262 6 187 255 0 0 chrX 119400543 119400594 -43199336 + L2 LINE L2 3263 3313 0 287 232 21 63 chrX 119402006 119402101 -43197829 + MIR3 SINE MIR 93 183 -25 180 289 11 78 chrX 119402084 119402174 -43197756 - MIR3 SINE MIR -40 168 85 * 384 137 96 0 chrX 119402245 119402318 -43197612 - MADE1 DNA Mariner 0 80 1 781 183 0 0 chrX 119403313 119403439 -43196491 - FLAM_A SINE Alu -7 126 1 180 306 49 56 chrX 119403535 119403679 -43196251 + L2 LINE L2 3171 3313 0 318 340 33 27 chrX 119405083 119405233 -43194697 - MIR SINE MIR -60 202 52 1698 154 68 4 chrX 119405262 119405423 -43194507 - AluJo SINE Alu -14 298 110 189 0 0 0 chrX 119405423 119405444 -43194486 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1698 154 68 4 chrX 119405444 119405562 -43194368 - AluJo SINE Alu -202 110 1 221 175 0 0 chrX 119405667 119405707 -43194223 + (TA)n Simple_repeat Simple_repeat 1 40 0 2308 116 0 0 chrX 119406975 119407278 -43192652 + AluSx SINE Alu 2 304 -8 406 350 19 1 chrX 119408917 119409051 -43190879 - MIR SINE MIR -69 139 2 487 241 184 39 chrX 119410089 119410296 -43189634 - MIR SINE MIR -6 256 20 35 0 0 0 chrX 119410619 119410654 -43189276 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chrX 119410776 119410825 -43189105 + AT_rich Low_complexity Low_complexity 1 49 0 3505 58 0 7 chrX 119411309 119411760 -43188170 - LTR7 LTR ERV1 -2 448 1 2435 76 40 13 chrX 119411760 119412140 -43187790 - HERVH LTR ERV1 0 7713 7324 1322 115 23 9 chrX 119412140 119412357 -43187573 - HERVH LTR ERV1 -1894 5819 5600 4130 142 1 1 chrX 119412358 119413020 -43186910 - HERVH LTR ERV1 -2564 5149 4488 3187 97 2 10 chrX 119413022 119413515 -43186415 - HERVH LTR ERV1 -3720 3993 3505 18955 84 56 60 chrX 119413518 119416824 -43183106 - HERVH LTR ERV1 -4422 3291 1 3412 65 2 5 chrX 119416826 119417275 -43182655 - LTR7 LTR ERV1 -2 448 1 2049 131 17 0 chrX 119417742 119418032 -43181898 + AluSx SINE Alu 1 295 -17 1088 181 29 13 chrX 119418276 119418514 -43181416 - L1MB8 LINE L1 -2 6176 5935 877 219 80 13 chrX 119419831 119420068 -43179862 + L1ME2 LINE L1 5897 6149 -15 2604 46 0 0 chrX 119421726 119422031 -43177899 - AluY SINE Alu -6 305 1 4014 79 16 20 chrX 119422790 119422955 -43176975 - MER41A LTR ERV1 0 554 390 2132 88 3 7 chrX 119422955 119423273 -43176657 - AluSx SINE Alu 0 317 1 4014 79 16 20 chrX 119423273 119423662 -43176268 - MER41A LTR ERV1 -164 390 1 1811 89 4 0 chrX 119424278 119424536 -43175394 - AluSx SINE Alu 0 317 59 388 123 15 0 chrX 119624536 119624601 -42975329 + AluSp/q SINE Alu 238 303 0 274 252 0 117 chrX 119624601 119624631 -42975299 - MIR SINE MIR -137 125 93 2064 116 0 10 chrX 119624631 119624932 -42974998 + AluSx SINE Alu 3 300 -12 274 252 0 117 chrX 119624932 119625012 -42974918 - MIR SINE MIR -169 93 28 346 381 23 6 chrX 119625450 119625626 -42974304 + MIR3 SINE MIR 3 181 -27 2194 104 3 0 chrX 119625747 119626046 -42973884 + AluSx SINE Alu 11 310 -2 344 145 14 29 chrX 119626251 119626320 -42973610 + MIR SINE MIR 72 139 -69 416 313 88 14 chrX 119626604 119626751 -42973179 - L2 LINE L2 0 3272 3115 3929 223 124 39 chrX 119626771 119626821 -42973109 + L2 LINE L2 1776 1820 -1493 2193 108 0 0 chrX 119626821 119627117 -42972813 - AluSx SINE Alu -16 296 1 3929 223 124 39 chrX 119627117 119627171 -42972759 + L2 LINE L2 1820 1868 -1445 1813 157 0 7 chrX 119627171 119627471 -42972459 - AluJo SINE Alu -14 298 1 3929 223 124 39 chrX 119627471 119628771 -42971159 + L2 LINE L2 1868 3313 0 840 297 135 63 chrX 119628865 119628995 -42970935 - L2 LINE L2 -502 2812 2693 2239 110 0 0 chrX 119628995 119629303 -42970627 + AluSx SINE Alu 1 308 -4 2035 147 0 0 chrX 119629312 119629624 -42970306 + AluJb SINE Alu 1 312 0 840 297 135 63 chrX 119629624 119630106 -42969824 - L2 LINE L2 -628 2686 2145 448 266 68 73 chrX 119630207 119630399 -42969531 - L2 LINE L2 -1 3312 3122 285 330 11 11 chrX 119630397 119630488 -42969442 - MIR SINE MIR -152 110 20 * 2034 117 0 7 chrX 119630744 119631035 -42968895 + AluSx SINE Alu 1 289 -23 558 308 149 48 chrX 119631080 119631597 -42968333 - L2 LINE L2 -2491 823 255 186 71 0 0 chrX 119632355 119632383 -42967547 + (A)n Simple_repeat Simple_repeat 1 28 0 1672 153 49 0 chrX 119633396 119633683 -42966247 - AluJo SINE Alu -11 301 1 22 35 0 0 chrX 119634730 119634759 -42965171 + AT_rich Low_complexity Low_complexity 1 29 0 1946 91 11 0 chrX 119634759 119635022 -42964908 - AluSq SINE Alu -47 266 1 2096 109 3 7 chrX 119635544 119635846 -42964084 - AluSx SINE Alu -11 301 1 512 197 49 63 chrX 119636008 119636150 -42963780 - L2 LINE L2 -52 3261 3122 659 151 0 0 chrX 119636203 119636309 -42963621 - AluSg/x SINE Alu -8 302 197 361 278 10 0 chrX 119636321 119636418 -42963512 - L2 LINE L2 -243 3070 2973 729 81 10 0 chrX 119636420 119636519 -42963411 + HY3 scRNA scRNA 1 100 -1 193 128 43 21 chrX 119636519 119636542 -42963388 + GA-rich Low_complexity Low_complexity 2 23 -26 2215 94 13 0 chrX 119636542 119636850 -42963080 + AluSx SINE Alu 1 312 0 193 128 43 21 chrX 119636850 119636873 -42963057 + GA-rich Low_complexity Low_complexity 23 49 0 1243 37 0 37 chrX 119636873 119637060 -42962870 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2124 223 62 98 chrX 119637104 119637625 -42962305 - L2 LINE L2 -264 3008 2470 1924 118 0 35 chrX 119637625 119637938 -42961992 - AluSx SINE Alu -10 302 1 2124 223 62 98 chrX 119637938 119638144 -42961786 - L2 LINE L2 -802 2470 2312 2294 198 61 55 chrX 119638144 119638331 -42961599 + MLT1E2 LTR MaLR 2 186 -440 2255 106 0 0 chrX 119638331 119638634 -42961296 + AluSx SINE Alu 1 303 -9 2294 198 61 55 chrX 119638634 119639067 -42960863 + MLT1E2 LTR MaLR 186 626 0 2124 223 62 98 chrX 119639067 119639208 -42960722 - L2 LINE L2 -960 2312 2168 2089 114 3 0 chrX 119639289 119639586 -42960344 + AluSx SINE Alu 1 298 -14 1797 151 0 25 chrX 119639928 119640246 -42959684 + AluJo SINE Alu 1 310 -2 498 222 28 0 chrX 119640646 119640754 -42959176 - L1PB4 LINE L1 -8 6148 6038 21 0 0 0 chrX 119640781 119640802 -42959128 + AT_rich Low_complexity Low_complexity 1 21 0 2088 121 0 0 chrX 119640855 119641145 -42958785 + AluSx SINE Alu 1 290 -22 820 145 0 7 chrX 119641187 119641325 -42958605 + AluJo SINE Alu 91 227 -85 2621 199 44 43 chrX 119641328 119641596 -42958334 + L1ME1 LINE L1 5504 5770 -396 2310 97 0 3 chrX 119641596 119641905 -42958025 + AluSq SINE Alu 1 308 -5 2621 199 44 43 chrX 119641905 119642294 -42957636 + L1ME1 LINE L1 5770 6162 -4 1650 160 3 3 chrX 119642338 119642646 -42957284 - AluJb SINE Alu 0 308 1 842 299 36 13 chrX 119642676 119642900 -42957030 - MIR SINE MIR -31 231 3 1533 286 154 19 chrX 119642974 119643603 -42956327 - L3 LINE CR1 0 1577 864 518 43 14 0 chrX 119643986 119644055 -42955875 + (CA)n Simple_repeat Simple_repeat 2 71 0 186 71 0 0 chrX 119644086 119644114 -42955816 + (T)n Simple_repeat Simple_repeat 1 28 0 2292 94 0 0 chrX 119644472 119644781 -42955149 - AluSx SINE Alu -3 309 1 2163 101 0 3 chrX 119645048 119645346 -42954584 + AluSq SINE Alu 1 297 -16 315 49 0 0 chrX 119645581 119645622 -42954308 + (CAT)n Simple_repeat Simple_repeat 2 42 0 909 164 0 0 chrX 119645636 119645776 -42954154 + FRAM SINE Alu 1 140 -36 870 209 156 27 chrX 119645818 119646119 -42953811 - L1MD3 LINE L1 -12 7983 7644 685 238 150 56 chrX 119647597 119647971 -42951959 + MER96B DNA MER1_type? 9 417 0 22 70 0 0 chrX 119648188 119648231 -42951699 + GC_rich Low_complexity Low_complexity 1 43 0 270 158 53 0 chrX 119651512 119651569 -42948361 + L1MB5 LINE L1 6112 6171 -3 2287 88 7 3 chrX 119651627 119651932 -42947998 - AluSc SINE Alu -3 306 1 28 0 0 0 chrX 119651941 119651969 -42947961 + AT_rich Low_complexity Low_complexity 1 28 0 2390 62 10 7 chrX 119651987 119652296 -42947634 - AluY SINE Alu -1 310 1 1894 130 11 0 chrX 119652296 119652573 -42947357 - AluSg SINE Alu -30 280 1 750 270 89 17 chrX 119653079 119653316 -42946614 + MIR SINE MIR 3 256 -6 631 197 36 36 chrX 119653339 119653476 -42946454 + MIR SINE MIR 25 161 -101 321 43 0 0 chrX 119653494 119653540 -42946390 - AluSx SINE Alu 0 301 256 1918 99 0 0 chrX 119653620 119653873 -42946057 - AluSx SINE Alu -57 255 3 251 230 23 69 chrX 119653883 119653970 -42945960 + MIR SINE MIR 160 242 -20 423 0 0 0 chrX 119655424 119655471 -42944459 + (T)n Simple_repeat Simple_repeat 1 47 0 368 313 8 23 chrX 119655496 119655627 -42944303 + MIR3 SINE MIR 79 207 -1 495 229 122 0 chrX 119656610 119656741 -42943189 + MER69 DNA AcHobo 1 147 -2379 772 177 0 0 chrX 119656992 119657122 -42942808 + MIR SINE MIR 100 229 -33 2094 121 0 0 chrX 119657162 119657459 -42942471 - AluSx SINE Alu -15 297 1 575 263 22 0 chrX 119658448 119658585 -42941345 - MIR SINE MIR -30 232 93 2223 90 0 0 chrX 119659133 119659422 -42940508 + AluSx SINE Alu 1 289 -23 2155 76 0 0 chrX 119659422 119659697 -42940233 + AluY SINE Alu 36 311 0 668 311 207 3 chrX 119659765 119660128 -42939802 + L2 LINE L2 2836 3272 0 281 383 0 0 chrX 119660190 119660271 -42939659 + L2 LINE L2 3186 3266 -6 1890 118 14 4 chrX 119660290 119660617 -42939313 + AluSx SINE Alu 1 330 0 2071 114 3 0 chrX 119660619 119660917 -42939013 + AluSx SINE Alu 1 299 -13 184 298 0 18 chrX 119661370 119661427 -42938503 + MIR SINE MIR 206 261 -1 551 202 97 0 chrX 119661775 119661899 -42938031 - MIR SINE MIR -12 250 115 659 296 40 0 chrX 119662118 119662317 -42937613 + MIR SINE MIR 51 257 -5 289 268 0 14 chrX 119663268 119663339 -42936591 - L2 LINE L2 -15 3257 3188 2003 106 0 48 chrX 119663401 119663713 -42936217 + AluSx SINE Alu 1 297 -15 385 202 0 24 chrX 119663750 119663834 -42936096 + MIR3 SINE MIR 77 158 -50 2178 101 3 0 chrX 119663946 119664243 -42935687 - AluSx SINE Alu -14 298 1 3526 134 40 31 chrX 119664243 119664861 -42935069 - L1MA5 LINE L1 -237 6063 5440 262 260 84 26 chrX 119665141 119665295 -42934635 - L2 LINE L2 -193 3079 2917 472 206 84 0 chrX 119665307 119665414 -42934516 + L2 LINE L2 3193 3308 -5 410 118 0 26 chrX 119665414 119665490 -42934440 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 1926 145 0 0 chrX 119665493 119665789 -42934141 + AluSx SINE Alu 1 296 -16 1220 98 0 0 chrX 119665803 119665967 -42933963 + AluSg/x SINE Alu 125 288 -22 888 115 0 0 chrX 119666380 119666510 -42933420 - AluSg SINE Alu -9 303 174 5465 142 72 56 chrX 119666513 119668289 -42931641 - pTR5 LTR ERV1 0 2438 743 1265 83 0 28 chrX 119668289 119668469 -42931461 - AluSg SINE Alu -135 175 1 2039 94 0 60 chrX 119668874 119669193 -42930737 + AluSx SINE Alu 1 300 -12 747 268 39 15 chrX 119669660 119669865 -42930065 + MIR SINE MIR 47 256 -6 2092 115 3 0 chrX 119670210 119670515 -42929415 + AluSx SINE Alu 1 306 -6 1913 113 25 4 chrX 119670917 119671219 -42928711 - AluSx SINE Alu 0 308 1 521 215 136 91 chrX 119671506 119671748 -42928182 + MIR SINE MIR 2 254 -8 1621 161 49 3 chrX 119671876 119672161 -42927769 + AluSx SINE Alu 1 298 -14 928 167 12 0 chrX 119672239 119672401 -42927529 - FRAM SINE Alu -5 171 8 1825 138 10 3 chrX 119672874 119673164 -42926766 - AluSx SINE Alu -18 294 3 199 325 25 0 chrX 119673509 119673589 -42926341 + L2 LINE L2 3229 3310 -3 2159 90 0 13 chrX 119673681 119673981 -42925949 + AluSg SINE Alu 1 296 -14 216 0 0 0 chrX 119674392 119674416 -42925514 + (TC)n Simple_repeat Simple_repeat 1 24 0 198 0 0 0 chrX 119674415 119674437 -42925493 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 280 233 70 0 chrX 119674592 119674665 -42925265 + MIR SINE MIR 3 92 -116 762 120 0 72 chrX 119674665 119674790 -42925140 + LTR8 LTR ERV1 1 116 -575 612 103 0 0 chrX 119674789 119674867 -42925063 + LTR8 LTR ERV1 614 691 0 * 734 227 17 17 chrX 119674867 119675039 -42924891 + MIR SINE MIR 88 259 -3 2207 129 3 0 chrX 119675041 119675350 -42924580 - AluSx SINE Alu -2 310 1 308 332 31 51 chrX 119676425 119676621 -42923309 - L2 LINE L2 -4 3309 3118 535 250 70 12 chrX 119676642 119676814 -42923116 - L2 LINE L2 0 3313 3132 2149 134 0 0 chrX 119676914 119677206 -42922724 + AluSx SINE Alu 1 292 -20 1997 152 0 3 chrX 119677449 119677745 -42922185 + AluJo SINE Alu 1 295 -17 1053 188 48 8 chrX 119677754 119677894 -42922036 + L1 LINE L1 2949 3105 -3041 2308 76 10 17 chrX 119677894 119678224 -42921706 + AluY SINE Alu 1 311 0 1053 188 48 8 chrX 119678224 119678333 -42921597 + L1 LINE L1 3105 3208 -2938 375 82 0 16 chrX 119678333 119678394 -42921536 + L1PB2 LINE L1 6085 6144 -7 1830 74 0 51 chrX 119678435 119678691 -42921239 + AluSx SINE Alu 1 243 -69 474 198 21 0 chrX 119678793 119678889 -42921041 + L1MC4 LINE L1 7801 7898 -144 320 169 96 36 chrX 119678900 119678983 -42920947 + L1MC4 LINE L1 6615 6702 -1340 195 100 0 0 chrX 119679019 119679049 -42920881 + (GA)n Simple_repeat Simple_repeat 1 30 0 331 215 15 85 chrX 119679054 119679161 -42920769 + L1MC4 LINE L1 7922 8020 -22 1349 176 117 7 chrX 119679161 119679434 -42920496 - AluSg SINE Alu -7 303 1 331 215 15 85 chrX 119679434 119679456 -42920474 + L1MC4 LINE L1 8020 8042 0 2333 108 0 0 chrX 119679470 119679777 -42920153 + AluSc SINE Alu 1 307 -2 2100 137 3 6 chrX 119679931 119680244 -42919686 + AluJo SINE Alu 1 312 0 2443 84 3 0 chrX 119681090 119681389 -42918541 - AluSq SINE Alu -13 300 1 505 300 77 86 chrX 119681612 119682052 -42917878 - L2 LINE L2 -636 2678 2243 201 195 0 0 chrX 119682092 119682133 -42917797 + (CA)n Simple_repeat Simple_repeat 1 41 0 2798 198 73 6 chrX 119683931 119684104 -42915826 - MER63C DNA MER1_type -136 924 764 2514 72 3 3 chrX 119684104 119684410 -42915520 - AluSp SINE Alu -7 306 1 2798 198 73 6 chrX 119684410 119684770 -42915160 - MER63C DNA MER1_type -296 764 340 2246 116 0 3 chrX 119684770 119685073 -42914857 + AluSx SINE Alu 1 302 -10 2798 198 73 6 chrX 119685073 119685171 -42914759 - MER63C DNA MER1_type -720 340 250 2231 110 0 3 chrX 119685171 119685461 -42914469 + AluSx SINE Alu 1 289 -23 258 122 0 0 chrX 119685501 119685542 -42914388 - L2 LINE L2 0 3313 3273 1268 61 0 0 chrX 119685567 119685715 -42914215 + AluSp/q SINE Alu 157 304 -9 1110 159 42 53 chrX 119685715 119685979 -42913951 - MER63C DNA MER1_type -669 261 1 308 317 0 12 chrX 119686130 119686212 -42913718 + L2 LINE L2 3179 3259 -54 2270 88 3 31 chrX 119686226 119686545 -42913385 - AluSg SINE Alu 0 310 1 2363 88 0 13 chrX 119686560 119686865 -42913065 - AluSx SINE Alu -9 303 3 2255 120 0 0 chrX 119686869 119687168 -42912762 - AluSx SINE Alu -13 299 1 354 289 57 75 chrX 119687657 119687816 -42912114 + MIR3 SINE MIR 31 186 -22 2295 111 0 3 chrX 119687859 119688166 -42911764 - AluSx SINE Alu -6 306 1 794 198 0 0 chrX 119688274 119688400 -42911530 - FLAM_A SINE Alu -7 126 1 203 179 0 0 chrX 119688413 119688452 -42911478 + T-rich Low_complexity Low_complexity 1 39 0 2280 121 6 0 chrX 119688455 119688793 -42911137 - L1PB3 LINE L1 0 6154 5815 1944 114 0 7 chrX 119688794 119689065 -42910865 - AluSq SINE Alu -2 311 43 567 111 0 40 chrX 119689066 119689186 -42910744 + AluSp/q SINE Alu 189 304 0 4376 138 14 32 chrX 119689186 119689876 -42910054 - L1P5 LINE L1 -685 5469 4802 2223 125 7 0 chrX 119689876 119690181 -42909749 - AluSx SINE Alu -3 309 3 4376 138 14 32 chrX 119690181 119690539 -42909391 - L1P5 LINE L1 -1352 4802 4439 1004 163 19 0 chrX 119691175 119691335 -42908595 + FRAM SINE Alu 1 163 -13 204 159 0 91 chrX 119691422 119691466 -42908464 - L2 LINE L2 -12 3301 3262 * 222 270 230 0 chrX 119691432 119691532 -42908398 - MIR SINE MIR -12 250 128 672 240 33 7 chrX 119691538 119691688 -42908242 - MIR SINE MIR -77 185 32 378 276 23 0 chrX 119691700 119691787 -42908143 + L1MC4 LINE L1 6615 6703 -1339 2127 129 0 3 chrX 119691802 119692104 -42907826 - AluSx SINE Alu -10 302 2 266 254 158 0 chrX 119692603 119692717 -42907213 + MIR SINE MIR 21 152 -110 2497 72 0 0 chrX 119692756 119693049 -42906881 - AluSg SINE Alu -17 293 1 420 316 82 59 chrX 119693711 119694214 -42905716 - L2 LINE L2 0 3272 2760 1950 122 11 0 chrX 119694214 119694520 -42905410 + AluSq SINE Alu 4 312 0 420 316 82 59 chrX 119694520 119694575 -42905355 - L2 LINE L2 -512 2760 2708 737 174 0 0 chrX 119694577 119694692 -42905238 - FLAM_A SINE Alu -18 124 10 355 273 97 34 chrX 119694755 119694931 -42904999 - L2 LINE L2 -865 2449 2263 718 198 6 87 chrX 119694933 119695105 -42904825 + FRAM SINE Alu 4 161 -5 1990 110 4 4 chrX 119695136 119695408 -42904522 + AluSq SINE Alu 1 272 -41 249 33 0 0 chrX 119695414 119695444 -42904486 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 336 143 0 0 chrX 119695444 119695500 -42904430 + (GGGA)n Simple_repeat Simple_repeat 3 58 0 200 325 87 40 chrX 119695633 119695910 -42904020 - L2 LINE L2 -1504 1810 1521 1589 217 75 3 chrX 119695930 119696275 -42903655 - LTR16A LTR ERVL 0 450 81 387 299 64 20 chrX 119696381 119696585 -42903345 - L2 LINE L2 -1865 1449 1237 2274 114 0 3 chrX 119697382 119697688 -42902242 - AluSq SINE Alu -8 305 1 612 181 154 68 chrX 119697701 119697993 -42901937 - L1MC5 LINE L1 -36 7925 7609 1804 112 8 4 chrX 119698081 119698323 -42901607 - AluSq SINE Alu -70 243 1 2185 118 23 0 chrX 119698618 119698960 -42900970 - AluSx SINE Alu 0 349 1 456 330 28 33 chrX 119698962 119699177 -42900753 - MIR SINE MIR -48 214 1 809 207 11 17 chrX 119699421 119699600 -42900330 - MER5B DNA MER1_type 0 178 1 1027 234 15 41 chrX 119699669 119699937 -42899993 + MIR SINE MIR 6 262 0 454 300 40 20 chrX 119700150 119700300 -42899630 + MIR3 SINE MIR 49 201 -7 390 282 64 91 chrX 119700449 119700669 -42899261 + L2 LINE L2 3099 3312 -1 2272 84 35 0 chrX 119700840 119701124 -42898806 + AluSc SINE Alu 1 294 -15 896 207 49 88 chrX 119701130 119701177 -42898753 + L1MC4a LINE L1 5600 5647 -2161 2155 113 55 25 chrX 119701177 119701503 -42898427 - MER1B DNA MER1_type 0 337 2 896 207 49 88 chrX 119701503 119701724 -42898206 + L1MC4a LINE L1 5647 5855 -1953 2306 110 7 0 chrX 119701724 119702016 -42897914 - AluSq SINE Alu -19 294 1 896 207 49 88 chrX 119702016 119702075 -42897855 + L1MC4a LINE L1 5855 5915 -1893 202 164 0 73 chrX 119702316 119702371 -42897559 + A-rich Low_complexity Low_complexity 2 52 0 2103 120 17 0 chrX 119703358 119703649 -42896281 - AluSx SINE Alu -16 296 1 554 262 77 11 chrX 119703742 119703925 -42896005 - MIR SINE MIR -15 247 53 1925 179 52 3 chrX 119705174 119705521 -42894409 + MLT1A1 LTR MaLR 2 365 0 700 235 111 39 chrX 119705709 119705943 -42893987 + MIR SINE MIR 12 262 0 2508 66 3 0 chrX 119705955 119706258 -42893672 - AluY SINE Alu -7 304 1 1405 49 0 0 chrX 119706285 119706449 -42893481 - U1 snRNA snRNA -1 164 1 2312 109 3 0 chrX 119706628 119706939 -42892991 - AluSx SINE Alu 0 312 1 891 195 23 111 chrX 119706941 119707203 -42892727 - MER8 DNA MER2_type 0 239 1 2382 75 3 3 chrX 119707972 119708265 -42891665 + AluSx SINE Alu 1 293 -19 183 303 40 26 chrX 119708584 119708660 -42891270 - L2 LINE L2 -277 2995 2919 446 205 213 0 chrX 119708757 119708884 -42891046 + Charlie8 DNA MER1_type 47 200 -2217 2172 131 0 16 chrX 119709046 119709351 -42890579 - AluSx SINE Alu -12 300 1 2034 142 0 31 chrX 119709568 119709886 -42890044 + AluJo SINE Alu 1 308 -4 1103 203 36 13 chrX 119709945 119710182 -42889748 + MIR SINE MIR 1 245 -17 530 306 133 39 chrX 119710210 119710645 -42889285 - L2 LINE L2 -674 2640 2165 2299 114 0 28 chrX 119712724 119713041 -42886889 - AluSx SINE Alu -4 308 1 310 187 13 13 chrX 119713355 119713430 -42886500 - MER116 DNA Mariner -5 75 1 337 293 73 59 chrX 119713542 119713658 -42886272 + L1ME4a LINE L1 4631 4744 -1402 2409 89 0 3 chrX 119713658 119713960 -42885970 + AluSg SINE Alu 1 301 -9 337 293 73 59 chrX 119713960 119714138 -42885792 + L1ME4a LINE L1 4744 4979 -1167 1871 148 7 26 chrX 119714147 119714452 -42885478 - AluJb SINE Alu -10 302 4 2344 108 0 0 chrX 119714465 119714762 -42885168 - AluSx SINE Alu -15 297 1 1934 129 10 58 chrX 119714803 119714952 -42884978 + AluJb SINE Alu 1 129 -183 2380 88 0 16 chrX 119714952 119715260 -42884670 + AluSc SINE Alu 1 303 -6 1934 129 10 58 chrX 119715260 119715420 -42884510 + AluJb SINE Alu 129 295 -17 421 108 0 2 chrX 119715597 119715784 -42884146 + AluSq SINE Alu 85 304 -8 1031 253 117 66 chrX 119715870 119716450 -42883480 + L1ME4a LINE L1 5258 5892 -229 2455 80 0 3 chrX 119716450 119716751 -42883179 - AluSx SINE Alu -12 300 1 1031 253 117 66 chrX 119716751 119716977 -42882953 + L1ME4a LINE L1 5892 6105 -16 285 102 85 0 chrX 119716974 119717033 -42882897 - L1MB3 LINE L1 0 6183 6120 * 1796 148 4 4 chrX 119717043 119717306 -42882624 - AluJo SINE Alu -16 296 34 21 57 0 0 chrX 119717306 119717341 -42882589 + AT_rich Low_complexity Low_complexity 1 35 0 2197 120 3 7 chrX 119717500 119717799 -42882131 + AluSx SINE Alu 1 298 -14 1088 62 0 20 chrX 119718281 119718427 -42881503 - L1PA10 LINE L1 -1 6167 6025 2559 70 3 0 chrX 119718657 119718958 -42880972 - AluSp SINE Alu -11 302 1 2245 122 0 3 chrX 119719259 119719571 -42880359 - AluSx SINE Alu -1 311 1 501 185 163 0 chrX 119720117 119720252 -42879678 + L1ME2 LINE L1 6008 6164 0 2279 109 0 0 chrX 119720261 119720555 -42879375 + AluSq SINE Alu 1 294 -19 403 282 69 50 chrX 119720584 119720670 -42879260 + L1MC4 LINE L1 7826 7909 -133 1960 113 6 85 chrX 119720670 119721026 -42878904 + AluSx SINE Alu 1 312 0 403 282 69 50 chrX 119721026 119721141 -42878789 + L1MC4 LINE L1 7909 8031 -11 484 301 128 62 chrX 119721569 119722497 -42877433 - L2 LINE L2 0 3272 2291 379 287 101 24 chrX 119722540 119722731 -42877199 + MIR SINE MIR 41 262 0 391 258 67 90 chrX 119722737 119723082 -42876848 - L2 LINE L2 -1066 2248 1912 2008 111 0 0 chrX 119724131 119724393 -42875537 - AluSx SINE Alu -17 295 34 1696 153 0 43 chrX 119724418 119724700 -42875230 - AluJb SINE Alu -42 270 1 4738 145 81 53 chrX 119725011 119725232 -42874698 + MER21A LTR ERV1 1 214 -717 1675 81 36 0 chrX 119725232 119725454 -42874476 - MER30 DNA MER1_type 0 230 1 4738 145 81 53 chrX 119725454 119725876 -42874054 + MER21A LTR ERV1 214 679 -252 2082 109 3 10 chrX 119725876 119726179 -42873751 + AluSx SINE Alu 1 301 -11 4738 145 81 53 chrX 119726179 119726440 -42873490 + MER21A LTR ERV1 679 931 0 2287 85 3 0 chrX 119726590 119726885 -42873045 + AluSg SINE Alu 1 296 -14 220 309 15 0 chrX 119727020 119727088 -42872842 - L2 LINE L2 -5 3308 3240 342 223 67 21 chrX 119727860 119727960 -42871970 + MIR SINE MIR 17 119 -99 249 329 0 0 chrX 119728300 119728376 -42871554 + L2 LINE L2 2593 2668 -646 200 294 51 76 chrX 119728725 119728922 -42871008 + L2 LINE L2 3119 3310 -3 262 268 172 54 chrX 119728928 119729133 -42870797 + MIR3 SINE MIR 3 214 -48 23 78 0 0 chrX 119730830 119730881 -42869049 + GC_rich Low_complexity Low_complexity 1 51 0 218 339 0 28 chrX 119731098 119731207 -42868723 + C-rich Low_complexity Low_complexity 3 108 0 241 208 146 52 chrX 119731287 119731376 -42868554 - MIR SINE MIR -26 236 139 620 215 47 36 chrX 119731376 119731557 -42868373 + MIR SINE MIR 2 187 -75 351 274 105 16 chrX 119731615 119731739 -42868191 - MIR SINE MIR -123 139 5 2114 112 3 7 chrX 119732478 119732774 -42867156 - AluSx SINE Alu -17 295 1 2384 43 7 3 chrX 119732801 119733100 -42866830 + AluY SINE Alu 1 300 -11 228 184 0 0 chrX 119733968 119734017 -42865913 + CT-rich Low_complexity Low_complexity 3 51 0 1775 130 21 18 chrX 119734185 119734332 -42865598 - AluSx SINE Alu -26 286 136 2258 84 0 3 chrX 119734332 119734630 -42865300 - AluY SINE Alu -14 297 1 1775 130 21 18 chrX 119734630 119734767 -42865163 - AluSx SINE Alu -176 136 1 197 32 0 32 chrX 119734807 119734838 -42865092 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2048 94 29 23 chrX 119734977 119735284 -42864646 - AluSx SINE Alu -3 309 1 1686 226 77 11 chrX 119735304 119735681 -42864249 - MER20B DNA MER1_type -381 402 1 812 295 76 48 chrX 119735683 119735776 -42864154 + L2 LINE L2 2942 3031 -282 2346 51 10 0 chrX 119735776 119736068 -42863862 + AluY SINE Alu 1 295 -16 812 295 76 48 chrX 119736068 119736330 -42863600 + L2 LINE L2 3031 3307 -6 389 20 0 20 chrX 119736330 119736381 -42863549 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 1501 121 9 30 chrX 119736801 119737033 -42862897 + THE1B LTR MaLR 138 364 0 1932 142 0 22 chrX 119737107 119737425 -42862505 - AluJo SINE Alu 0 312 2 2247 87 7 0 chrX 119737435 119737734 -42862196 - AluSp SINE Alu -12 301 1 1971 218 65 16 chrX 119737855 119738233 -42861697 - L1ME1 LINE L1 -15 6151 5742 937 204 125 61 chrX 119738233 119738277 -42861653 - MLT1A1 LTR MaLR 0 365 325 2188 78 0 7 chrX 119738277 119738587 -42861343 - AluSg SINE Alu 0 308 1 937 204 125 61 chrX 119738587 119738884 -42861046 - MLT1A1 LTR MaLR -40 325 1 1971 218 65 16 chrX 119738884 119739001 -42860929 - L1ME1 LINE L1 -424 5742 5632 1116 212 14 20 chrX 119738977 119739270 -42860660 - L1MC4a LINE L1 -334 5827 5652 * 1498 188 44 3 chrX 119739298 119739591 -42860339 + AluJo SINE Alu 1 305 -7 647 274 93 80 chrX 119739855 119740319 -42859611 - L2 LINE L2 -2572 742 273 3242 124 110 18 chrX 119740494 119741066 -42858864 - MER51A LTR ERV1 -9 625 1 856 208 34 6 chrX 119741451 119741629 -42858301 + L2 LINE L2 2062 2244 -1070 1388 206 40 0 chrX 119741631 119741883 -42858047 + Tigger7 DNA MER2_type 3 264 -2223 539 216 0 20 chrX 119741883 119741985 -42857945 + Tigger7 DNA MER2_type 2388 2487 0 224 211 0 0 chrX 119741985 119742023 -42857907 + L2 LINE L2 2243 2280 -1034 8104 118 81 113 chrX 119742025 119743769 -42856161 + pTR5 LTR ERV1 741 2428 -10 457 327 7 7 chrX 119743769 119743922 -42856008 + L2 LINE L2 2269 2421 -893 1987 122 23 0 chrX 119743924 119744227 -42855703 - AluSg SINE Alu 0 310 1 1544 234 45 62 chrX 119744230 119744729 -42855201 + L2 LINE L2 2692 3172 -141 2182 100 7 3 chrX 119744729 119745029 -42854901 - AluSx SINE Alu -11 301 1 1544 234 45 62 chrX 119745029 119745169 -42854761 + L2 LINE L2 3172 3313 0 2241 94 0 0 chrX 119745571 119745868 -42854062 - AluSq SINE Alu -16 297 1 231 325 0 0 chrX 119745888 119745968 -42853962 - L2 LINE L2 -840 2474 2395 755 248 95 45 chrX 119746154 119746519 -42853411 + MLT1J2 LTR MaLR 68 404 -5 2132 125 0 3 chrX 119746554 119746867 -42853063 + AluSx SINE Alu 1 312 0 1389 168 0 4 chrX 119746873 119747105 -42852825 + AluSg/x SINE Alu 80 310 0 2327 119 61 11 chrX 119747117 119747478 -42852452 - MSTB1 LTR MaLR -53 379 1 2288 73 0 7 chrX 119747872 119748172 -42851758 - AluY SINE Alu -12 299 2 992 316 19 22 chrX 119748365 119748726 -42851204 - LTR16B LTR ERVL 0 464 105 381 293 8 0 chrX 119748904 119749027 -42850903 - HERV16 LTR ERVL -63 4933 4810 681 218 87 18 chrX 119749027 119749256 -42850674 - L1MEc LINE L1 -3535 2891 2647 22 35 0 0 chrX 119749374 119749403 -42850527 + AT_rich Low_complexity Low_complexity 1 29 0 1653 169 14 3 chrX 119749519 119749815 -42850115 + AluJb SINE Alu 1 299 -13 319 289 21 10 chrX 119750545 119750639 -42849291 - L1MEc LINE L1 -3753 2673 2578 221 75 25 0 chrX 119750639 119750679 -42849251 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 319 289 21 10 chrX 119750679 119750707 -42849223 - L1MEc LINE L1 -3848 2578 2552 960 89 0 0 chrX 119750707 119750831 -42849099 - AluJo SINE Alu -178 134 11 802 203 5 35 chrX 119750834 119751036 -42848894 - L1MEc LINE L1 -4005 2602 2407 * 809 196 63 59 chrX 119751031 119751193 -42848737 - L1MA4 LINE L1 0 6300 6140 195 42 0 0 chrX 119751193 119751217 -42848713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2305 77 0 0 chrX 119751217 119751502 -42848428 - AluSx SINE Alu -27 285 1 809 196 63 59 chrX 119751502 119751609 -42848321 - L1MA4 LINE L1 -159 6141 6029 782 233 66 28 chrX 119751604 119751781 -42848149 - L1MEc LINE L1 -4033 2393 2199 * 1808 158 0 3 chrX 119751781 119752073 -42847857 - AluJb SINE Alu -21 291 1 782 233 66 28 chrX 119752073 119752182 -42847748 - L1MEc LINE L1 -4227 2199 2096 1508 331 56 7 chrX 119752193 119752798 -42847132 - HERV16 LTR ERVL -777 4987 4353 * 2328 210 26 4 chrX 119752794 119753247 -42846683 - HERV16 LTR ERVL -3598 1398 936 6347 241 73 9 chrX 119753297 119755064 -42844866 - HERV16 LTR ERVL -3047 1949 2 875 269 9 0 chrX 119755065 119755281 -42844649 - LTR16B LTR ERVL 0 464 247 1122 255 105 46 chrX 119755283 119755878 -42844052 + L2 LINE L2 2104 2662 -651 2089 137 0 0 chrX 119755878 119756191 -42843739 - AluSq SINE Alu 0 313 1 1122 255 105 46 chrX 119756191 119756367 -42843563 + L2 LINE L2 2662 3313 0 1442 208 35 14 chrX 119756515 119756803 -42843127 - MLT1C LTR MaLR 0 467 174 2311 86 0 0 chrX 119756817 119757109 -42842821 + AluSx SINE Alu 1 292 -20 1097 106 0 19 chrX 119757109 119757262 -42842668 - L1PA10 LINE L1 -14 6154 6003 1268 83 11 6 chrX 119757262 119757443 -42842487 + MER51A LTR ERV1 453 634 0 6588 89 2 8 chrX 119757443 119758809 -42841121 + L1PA13 LINE L1 4806 6162 -1 2045 116 7 0 chrX 119759014 119759307 -42840623 + AluSx SINE Alu 1 295 -17 295 301 56 6 chrX 119759346 119759541 -42840389 + L1M4 LINE L1 3324 3528 -2618 1124 181 15 0 chrX 119809576 119809780 -42790150 - MER90 LTR ERV1 -405 209 3 186 189 0 0 chrX 119809824 119809861 -42790069 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 393 249 171 52 chrX 119810651 119810844 -42789086 + MIR SINE MIR 28 243 -19 546 141 12 0 chrX 119811705 119811790 -42788140 - AluJ/FRAM SINE Alu -3 309 224 843 123 0 77 chrX 119811823 119811920 -42788010 - L1MD2 LINE L1 -378 5981 5899 2145 95 13 33 chrX 119811920 119812225 -42787705 - AluSc SINE Alu -10 299 1 843 123 0 77 chrX 119812225 119812282 -42787648 - L1MD2 LINE L1 -460 5899 5839 623 301 91 52 chrX 119812349 119813115 -42786815 + L2 LINE L2 2470 3272 0 317 253 227 5 chrX 119813475 119813638 -42786292 + L2 LINE L2 3039 3313 0 236 273 191 18 chrX 119813780 119813890 -42786040 + L2 LINE L2 3137 3265 -7 278 273 31 68 chrX 119814685 119814846 -42785084 + MIR SINE MIR 60 214 -48 244 259 66 0 chrX 119815283 119815372 -42784558 - MIR SINE MIR -37 171 75 1694 155 62 0 chrX 119815574 119815865 -42784065 - L1MD1 LINE L1 0 6242 5934 225 29 0 0 chrX 119815865 119815900 -42784030 - L1MA3 LINE L1 0 6305 6271 * 2121 130 5 43 chrX 119815899 119816141 -42783789 - L1MD1 LINE L1 -282 5960 5735 3825 111 54 74 chrX 119816141 119816284 -42783646 - MER51A LTR ERV1 0 634 490 2225 82 0 88 chrX 119816284 119816624 -42783306 + AluSq SINE Alu 1 310 -3 3825 111 54 74 chrX 119816624 119817127 -42782803 - MER51A LTR ERV1 -144 490 1 2121 130 5 43 chrX 119817127 119817260 -42782670 - L1MD1 LINE L1 -507 5735 5599 27 29 0 0 chrX 119818035 119818069 -42781861 + AT_rich Low_complexity Low_complexity 1 34 0 6488 60 1 5 chrX 119818390 119819167 -42780763 + L1PA7 LINE L1 5379 6152 -2 22 56 0 0 chrX 119820248 119820284 -42779646 + AT_rich Low_complexity Low_complexity 1 36 0 822 145 0 0 chrX 119820497 119820614 -42779316 + FLAM_C SINE Alu 4 120 -23 279 218 0 0 chrX 119820615 119820716 -42779214 + (TA)n Simple_repeat Simple_repeat 2 102 0 2477 177 100 7 chrX 119820879 119821752 -42778178 - L1MD1 LINE L1 -770 5589 4632 221 215 54 118 chrX 119821933 119822026 -42777904 - MER5A DNA MER1_type -1 188 102 275 26 51 0 chrX 119822032 119822071 -42777859 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 686 198 0 0 chrX 119822080 119822196 -42777734 - FLAM_C SINE Alu -17 116 1 499 258 8 23 chrX 119822221 119822353 -42777577 - L1MDa LINE L1 -6396 144 15 7913 41 0 0 chrX 119822926 119823960 -42775970 - L1PA5 LINE L1 0 6154 5120 1254 156 122 38 chrX 119824305 119824593 -42775337 - AluJo SINE Alu 0 312 1 978 298 97 16 chrX 119824610 119824983 -42774947 + L2 LINE L2 2901 3303 -10 304 263 12 12 chrX 119824999 119825079 -42774851 + MER5A DNA MER1_type 110 189 0 1880 120 24 10 chrX 119825482 119825773 -42774157 + AluSx SINE Alu 1 295 -17 2494 49 0 0 chrX 119826020 119826325 -42773605 + AluY SINE Alu 1 305 -6 585 29 0 0 chrX 119826326 119826395 -42773535 + L1PA4 LINE L1 5925 5993 -162 361 0 0 0 chrX 119826395 119826440 -42773490 + AluY SINE Alu 255 299 -2 1889 30 0 30 chrX 119826442 119826678 -42773252 + L1PA4 LINE L1 5926 6154 -1 24 0 0 0 chrX 119827233 119827257 -42772673 + AT_rich Low_complexity Low_complexity 1 24 0 568 257 0 7 chrX 119828222 119828358 -42771572 - MIR SINE MIR 0 262 128 180 0 0 0 chrX 119828756 119828776 -42771154 + (T)n Simple_repeat Simple_repeat 1 20 0 1488 101 56 4 chrX 119829125 119829552 -42770378 + LTR54 LTR ERV1 1 510 0 594 204 31 71 chrX 119829632 119829857 -42770073 - L1MC5 LINE L1 -60 7901 7686 413 287 22 29 chrX 119830306 119830442 -42769488 - MER5A DNA MER1_type -4 185 51 676 278 97 19 chrX 119830463 119830679 -42769251 + MIR SINE MIR 13 245 -17 900 185 0 6 chrX 119830689 119830862 -42769068 - FRAM SINE Alu -5 171 1 1722 140 20 10 chrX 119832531 119832824 -42767106 + AluJb SINE Alu 1 296 -16 236 224 26 66 chrX 119833352 119833428 -42766502 - MER5A DNA MER1_type -73 116 44 194 152 30 0 chrX 119833440 119833473 -42766457 + MIR SINE MIR 95 128 -80 272 297 175 52 chrX 119833863 119834132 -42765798 - L2 LINE L2 -5 3267 2966 452 319 133 35 chrX 119834297 119834779 -42765151 - L2 LINE L2 -508 2806 2278 899 283 12 27 chrX 119835221 119835479 -42764451 - MIR SINE MIR -3 259 6 236 273 33 66 chrX 119835853 119835974 -42763956 - MIR3 SINE MIR -43 165 49 927 267 89 92 chrX 119837243 119837773 -42762157 - L2 LINE L2 -1 3271 2750 272 186 124 41 chrX 119837951 119838096 -42761834 - L1ME4a LINE L1 -2 6119 5963 11120 28 0 0 chrX 119838158 119840213 -42759717 - L1PA3 LINE L1 -3 6152 4099 4037 154 80 54 chrX 119840554 119841077 -42758853 - L1MB3 LINE L1 -4 6179 5671 2244 84 6 6 chrX 119841077 119841388 -42758542 - AluY SINE Alu 0 311 1 4037 154 80 54 chrX 119841388 119841586 -42758344 - L1MB3 LINE L1 -512 5671 5480 2261 71 3 0 chrX 119841586 119841881 -42758049 + AluY SINE Alu 1 296 -15 4037 154 80 54 chrX 119841881 119842095 -42757835 - L1MB3 LINE L1 -703 5480 5223 1710 146 66 0 chrX 119842150 119842424 -42757506 + AluJb SINE Alu 1 292 -20 934 258 38 25 chrX 119842513 119842753 -42757177 - MIR SINE MIR 0 262 20 354 270 32 71 chrX 119843089 119843215 -42756715 - MIR SINE MIR -55 207 87 295 320 204 41 chrX 119843549 119843696 -42756234 - MIR SINE MIR -85 177 7 1743 188 19 28 chrX 119843870 119844314 -42755616 - MER89 LTR ERV1 0 559 22 1358 191 0 26 chrX 119844727 119844999 -42754931 + AluJo SINE Alu 31 295 -17 342 0 0 0 chrX 119845003 119845041 -42754889 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 2588 91 43 5 chrX 119845042 119845438 -42754492 + L1MA1 LINE L1 5892 6302 0 260 179 77 0 chrX 119845451 119845529 -42754401 + Charlie5 DNA MER1_type 2388 2471 -141 207 0 0 0 chrX 119845544 119845567 -42754363 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2352 144 50 65 chrX 119846262 119846783 -42753147 + L1MD1 LINE L1 5730 6242 0 370 314 50 0 chrX 119847304 119847425 -42752505 - L1MC4 LINE L1 -1330 6712 6586 373 192 10 91 chrX 119847306 119847405 -42752525 + L1MCa LINE L1 1986 2076 -4350 353 293 23 60 chrX 119847442 119847539 -42752391 + L1MC4 LINE L1 6611 6703 -1339 267 31 0 0 chrX 119847539 119847571 -42752359 + (CA)n Simple_repeat Simple_repeat 2 33 0 353 293 23 60 chrX 119847571 119847606 -42752324 + L1MC4 LINE L1 6703 6738 -1304 201 244 0 0 chrX 119848805 119848846 -42751084 + GA-rich Low_complexity Low_complexity 1 41 0 2058 125 0 3 chrX 119849556 119849867 -42750063 - AluSx SINE Alu -2 310 1 1919 119 4 0 chrX 119850534 119850812 -42749118 + AluSx SINE Alu 34 312 0 677 244 30 40 chrX 119850946 119851147 -42748783 - MIR SINE MIR 0 262 64 964 214 3 86 chrX 119851165 119851468 -42748462 - L1MC4 LINE L1 0 8042 7765 216 226 38 0 chrX 119854965 119855018 -42744912 + L2 LINE L2 3258 3312 -1 277 317 66 53 chrX 119855873 119856054 -42743876 - MIR3 SINE MIR -56 152 13 1711 135 40 24 chrX 119856177 119856474 -42743456 - AluJo SINE Alu -10 302 1 798 106 30 8 chrX 119858019 119858151 -42741779 - L1MA7 LINE L1 -5 6286 6152 592 165 0 10 chrX 119858727 119858824 -42741106 - Charlie3 DNA MER1_type -2614 96 1 1079 164 0 47 chrX 119858897 119859110 -42740820 + MER20 DNA MER1_type 16 218 -1 1116 199 0 0 chrX 119859177 119859378 -42740552 + MER3 DNA MER1_type 1 201 -8 704 270 44 31 chrX 119859405 119859631 -42740299 + MIR SINE MIR 34 262 0 206 139 47 47 chrX 119859782 119859825 -42740105 + MIR SINE MIR 110 152 -110 752 255 54 5 chrX 119860360 119860544 -42739386 + MIR SINE MIR 4 196 -66 294 266 0 0 chrX 119861256 119861320 -42738610 - MIR SINE MIR 0 262 199 2200 165 53 7 chrX 119861322 119861534 -42738396 + MSTB1 LTR MaLR 1 202 -230 2243 95 10 0 chrX 119861534 119861839 -42738091 - AluSx SINE Alu 0 312 5 2200 165 53 7 chrX 119861839 119862039 -42737891 + MSTB1 LTR MaLR 202 432 0 328 245 137 20 chrX 119862054 119862156 -42737774 + L2 LINE L2 3200 3313 0 * 613 301 26 10 chrX 119862140 119862333 -42737597 - MIR SINE MIR -64 198 3 384 263 0 0 chrX 119862505 119862585 -42737345 - MIR SINE MIR -107 155 76 783 182 0 0 chrX 119863424 119863545 -42736385 - FLAM_A SINE Alu -12 121 1 2236 101 0 10 chrX 119863785 119864092 -42735838 - AluSx SINE Alu -8 304 1 547 289 6 13 chrX 119864296 119864452 -42735478 - MIR3 SINE MIR -1 207 53 387 83 0 0 chrX 119864613 119864673 -42735257 - L1PB4 LINE L1 -1 6155 6096 220 246 18 18 chrX 119864788 119864845 -42735085 - MIR SINE MIR 0 262 206 902 161 0 37 chrX 119864845 119865007 -42734923 - L1PB4 LINE L1 -43 6113 5958 212 300 33 11 chrX 119865131 119865221 -42734709 + MER5A DNA MER1_type 44 135 -54 336 141 99 0 chrX 119865311 119865382 -42734548 - MIR SINE MIR -9 253 176 2363 84 0 0 chrX 119865820 119866130 -42733800 + AluSx SINE Alu 1 310 -2 1464 89 79 5 chrX 119866547 119866761 -42733169 + MER30 DNA MER1_type 1 230 0 292 330 17 26 chrX 119866816 119866931 -42732999 - MIR SINE MIR -63 145 32 896 220 47 52 chrX 119867010 119867242 -42732688 + MIR SINE MIR 29 259 -3 181 234 109 31 chrX 119867241 119867305 -42732625 + L2 LINE L2 3225 3293 -20 * 928 117 0 0 chrX 119867666 119867794 -42732136 - FLAM_C SINE Alu -5 128 1 401 137 123 0 chrX 119868297 119868370 -42731560 + MER45A DNA AcHobo 95 176 -2 583 256 8 0 chrX 119868386 119868515 -42731415 - MLT1H1 LTR MaLR -425 130 1 417 261 85 52 chrX 119868529 119868682 -42731248 + MIR3 SINE MIR 16 173 -35 2083 121 7 0 chrX 119868756 119869061 -42730869 + AluSq SINE Alu 1 307 -6 216 249 86 122 chrX 119869248 119869681 -42730249 - L2 LINE L2 -49 3223 2807 2247 110 0 0 chrX 119869803 119870112 -42729818 + AluSx SINE Alu 1 309 -3 183 390 20 0 chrX 119870125 119870225 -42729705 + L2 LINE L2 1405 1506 -1808 837 271 12 32 chrX 119870229 119870346 -42729584 - MIR SINE MIR 0 262 144 2229 92 0 0 chrX 119870346 119870640 -42729290 - AluSg1 SINE Alu -15 294 1 837 271 12 32 chrX 119870640 119870769 -42729161 - MIR SINE MIR -118 144 21 182 386 60 16 chrX 119870762 119870946 -42728984 + L2 LINE L2 1527 1718 -1596 * 2472 65 0 0 chrX 119870946 119871253 -42728677 + AluSg SINE Alu 1 307 -3 723 270 58 66 chrX 119871273 119871651 -42728279 + L2 LINE L2 2243 2617 -697 1649 161 4 0 chrX 119871687 119871961 -42727969 - AluJb SINE Alu -15 297 23 2066 81 0 7 chrX 119871961 119872234 -42727696 + AluSx SINE Alu 27 297 -15 554 191 32 126 chrX 119872275 119872521 -42727409 - L2 LINE L2 -202 3070 2848 2049 129 0 3 chrX 119872555 119872864 -42727066 + AluJb SINE Alu 5 312 0 311 299 37 5 chrX 119872893 119873066 -42726864 - L2 LINE L2 -1136 2178 1927 2195 95 0 0 chrX 119873122 119873417 -42726513 + AluSg SINE Alu 1 295 -15 1857 100 40 0 chrX 119873417 119873666 -42726264 + AluY SINE Alu 43 301 -10 2462 89 0 13 chrX 119874410 119874724 -42725206 - AluSg SINE Alu 0 310 1 460 261 26 0 chrX 119875047 119875162 -42724768 - L2 LINE L2 0 3272 3155 2560 63 3 0 chrX 119875602 119875902 -42724028 + AluY SINE Alu 1 301 -10 284 85 43 0 chrX 119875909 119875956 -42723974 + GA-rich Low_complexity Low_complexity 1 49 0 716 249 6 12 chrX 119877515 119877684 -42722246 + MIR3 SINE MIR 41 208 0 2359 104 0 7 chrX 119878360 119878668 -42721262 + AluSx SINE Alu 1 306 -6 21 57 0 0 chrX 119878868 119878903 -42721027 + AT_rich Low_complexity Low_complexity 1 35 0 2338 98 0 16 chrX 119878906 119879213 -42720717 + AluSx SINE Alu 1 302 -10 608 267 162 10 chrX 119879421 119879724 -42720206 - L1ME4a LINE L1 -2 6119 5771 2152 138 0 0 chrX 119879868 119880180 -42719750 - AluSx SINE Alu 0 312 1 1997 148 7 0 chrX 119881088 119881379 -42718551 - AluJb SINE Alu -2 310 18 546 262 33 14 chrX 119881429 119881639 -42718291 - L1MC4a LINE L1 -1927 5881 5668 1835 121 0 0 chrX 119882154 119882402 -42717528 - AluSg SINE Alu -14 296 49 345 279 95 97 chrX 119882441 119882831 -42717099 - L1MEd LINE L1 -4942 1177 789 234 91 0 0 chrX 119883024 119883057 -42716873 + (C)n Simple_repeat Simple_repeat 1 33 0 2610 71 3 0 chrX 119883147 119883457 -42716473 - AluSp SINE Alu -2 311 1 404 298 41 23 chrX 119883487 119883658 -42716272 - L2 LINE L2 -227 3045 2872 * 1067 258 96 48 chrX 119883657 119884197 -42715733 - L2 LINE L2 0 3313 2751 1243 254 54 55 chrX 119884199 119884758 -42715172 - L2 LINE L2 -804 2510 1886 444 175 17 92 chrX 119884762 119884858 -42715072 + MER45 DNA AcHobo 6 93 -1488 2350 102 0 0 chrX 119884858 119885151 -42714779 - AluSg SINE Alu -17 293 1 444 175 17 92 chrX 119885151 119885174 -42714756 + MER45 DNA AcHobo 93 116 -1465 499 189 77 59 chrX 119885220 119885389 -42714541 + MLT1C LTR MaLR 63 234 -233 2081 112 36 3 chrX 119885389 119885692 -42714238 + AluSq SINE Alu 1 313 0 1301 118 17 0 chrX 119885705 119885883 -42714047 + AluSg/x SINE Alu 119 299 -11 395 162 15 0 chrX 119885883 119885951 -42713979 + MLT1C LTR MaLR 229 297 -170 2275 119 0 0 chrX 119885959 119886261 -42713669 + AluSx SINE Alu 1 302 -10 2362 75 0 29 chrX 119886263 119886569 -42713361 + AluY SINE Alu 1 297 -14 2221 67 35 7 chrX 119886569 119886853 -42713077 + AluY SINE Alu 1 292 -19 467 212 9 44 chrX 119886870 119886983 -42712947 - MIR SINE MIR -70 192 84 683 340 31 19 chrX 119887083 119887407 -42712523 + L2 LINE L2 1803 2130 -1184 1521 134 23 0 chrX 119887419 119887636 -42712294 - AluSx SINE Alu -90 222 1 459 331 27 20 chrX 119888944 119889092 -42710838 - MIR SINE MIR -97 165 17 1786 117 40 60 chrX 119889157 119889456 -42710474 + AluSc SINE Alu 1 293 -16 1034 126 0 0 chrX 119889463 119889606 -42710324 + AluSq/x SINE Alu 1 143 -169 713 148 0 0 chrX 119889606 119889714 -42710216 + AluY SINE Alu 204 311 0 2175 120 0 17 chrX 119889717 119890017 -42709913 + AluSx SINE Alu 1 295 -17 2483 70 3 25 chrX 119890018 119890334 -42709596 + AluSp SINE Alu 1 309 -4 951 310 4 4 chrX 119890340 119890608 -42709322 - L3 LINE CR1 -13 1564 1297 2310 58 41 14 chrX 119890658 119890953 -42708977 - AluY SINE Alu -8 303 1 481 305 28 6 chrX 119890992 119891170 -42708760 - MIR SINE MIR -59 149 3 629 234 208 38 chrX 119891171 119891436 -42708494 - L3 LINE CR1 -282 1295 986 2356 97 3 0 chrX 119892201 119892500 -42707430 - AluSq SINE Alu -13 300 1 200 284 15 0 chrX 119892696 119892763 -42707167 + L2 LINE L2 2677 2744 -570 2183 100 27 7 chrX 119892841 119893141 -42706789 + AluSx SINE Alu 1 306 -6 2684 30 3 0 chrX 119893543 119893844 -42706086 - AluY SINE Alu -9 302 1 1850 139 0 21 chrX 119893844 119894132 -42705798 - AluJb SINE Alu -30 282 1 566 326 88 13 chrX 119895031 119895258 -42704672 - MIR SINE MIR -17 245 2 1914 143 3 7 chrX 119895303 119895590 -42704340 - AluJo SINE Alu -21 291 6 2298 97 0 7 chrX 119895603 119895903 -42704027 - AluSq SINE Alu -15 298 1 271 291 217 0 chrX 119895931 119896106 -42703824 - MIR SINE MIR -10 252 40 958 108 0 8 chrX 119897029 119897158 -42702772 - FLAM_C SINE Alu -5 128 1 329 318 62 47 chrX 119897309 119897511 -42702419 - MIR SINE MIR -62 146 1 2514 57 0 13 chrX 119897606 119897907 -42702023 + AluY SINE Alu 1 297 -14 2057 105 88 0 chrX 119898213 119898498 -42701432 - AluSx SINE Alu -2 310 1 1456 177 85 18 chrX 119898711 119898994 -42700936 - AluJb SINE Alu -10 302 1 1839 143 0 78 chrX 119900297 119900495 -42699435 - AluJb SINE Alu -11 301 136 1633 262 0 86 chrX 119900495 119900819 -42699111 + AluY SINE Alu 1 296 -15 1839 143 0 78 chrX 119900819 119900942 -42698988 - AluJb SINE Alu -176 136 5 2382 98 3 0 chrX 119901156 119901453 -42698477 - AluSp SINE Alu -15 298 1 2229 128 0 10 chrX 119901521 119901834 -42698096 - AluSx SINE Alu -2 310 1 703 225 123 0 chrX 119902377 119902564 -42697366 + MER63A DNA MER1_type 1 210 0 499 266 0 0 chrX 119902748 119902861 -42697069 + L2 LINE L2 3201 3313 0 594 180 10 0 chrX 119902891 119902991 -42696939 + MIR SINE MIR 5 105 -157 2169 72 3 7 chrX 119903029 119903320 -42696610 + L1PB1 LINE L1 5861 6150 -1 806 115 35 0 chrX 119903326 119903439 -42696491 - FLAM_C SINE Alu -16 117 1 416 205 0 0 chrX 119903441 119903519 -42696411 - MIR SINE MIR -116 146 69 * 484 250 0 9 chrX 119903514 119903626 -42696304 + MIR SINE MIR 115 225 -37 396 308 67 2 chrX 119903633 119903783 -42696147 - MIR3 SINE MIR -55 153 6 2204 101 0 0 chrX 119903800 119904087 -42695843 - AluSx SINE Alu -16 296 10 239 111 48 16 chrX 119905538 119905601 -42694329 + CT-rich Low_complexity Low_complexity 2 66 0 2581 41 3 0 chrX 119906014 119906308 -42693622 - AluY SINE Alu -16 295 1 2312 107 0 0 chrX 119906311 119906610 -42693320 - AluSx SINE Alu -13 299 1 890 102 72 12 chrX 119906613 119906780 -42693150 + MSTB1-int LTR MaLR 1475 1651 0 341 102 0 0 chrX 119906780 119906829 -42693101 + MSTB1 LTR MaLR 1 49 -383 2727 45 0 0 chrX 119906835 119907146 -42692784 + AluY SINE Alu 1 311 0 2010 140 3 7 chrX 119907163 119907463 -42692467 + AluJo SINE Alu 1 299 -13 210 37 0 0 chrX 119907479 119907506 -42692424 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2062 63 32 49 chrX 119907552 119907878 -42692052 - AluY SINE Alu 0 321 1 432 263 8 0 chrX 119907879 119907997 -42691933 + Charlie7 DNA MER1_type 618 736 -1876 1092 202 117 18 chrX 119908051 119908475 -42691455 + MLT1G3 LTR MaLR 2 554 -36 1984 145 0 30 chrX 119908475 119908779 -42691151 + AluSx SINE Alu 1 295 -17 1092 202 117 18 chrX 119908779 119908818 -42691112 + MLT1G3 LTR MaLR 554 588 -2 547 171 76 44 chrX 119908818 119908918 -42691012 + L1ME3A LINE L1 5994 6102 -68 1695 108 0 5 chrX 119908918 119909141 -42690789 + AluSq SINE Alu 83 304 -9 547 171 76 44 chrX 119909141 119909198 -42690732 + L1ME3A LINE L1 6102 6156 -14 4571 218 75 71 chrX 119909223 119909650 -42690280 + Charlie7 DNA MER1_type 729 1153 -1459 1759 171 0 20 chrX 119909650 119909954 -42689976 - AluJo SINE Alu -14 298 1 4571 218 75 71 chrX 119909954 119910246 -42689684 + Charlie7 DNA MER1_type 1153 1442 -1170 2004 147 3 0 chrX 119910246 119910538 -42689392 - AluSx SINE Alu -18 294 2 4571 218 75 71 chrX 119910538 119910562 -42689368 + Charlie7 DNA MER1_type 1442 1464 -1148 2066 101 7 45 chrX 119910562 119910870 -42689060 - AluSx SINE Alu -16 296 1 4571 218 75 71 chrX 119910870 119911016 -42688914 + Charlie7 DNA MER1_type 1464 1608 -1004 2271 113 0 7 chrX 119911016 119911318 -42688612 - AluSq SINE Alu -13 300 1 4571 218 75 71 chrX 119911318 119911940 -42687990 + Charlie7 DNA MER1_type 1608 2226 -386 2316 97 7 0 chrX 119911940 119912239 -42687691 - AluSx SINE Alu -11 301 1 4571 218 75 71 chrX 119912239 119912290 -42687640 + Charlie7 DNA MER1_type 2226 2275 -337 1991 139 7 0 chrX 119912290 119912578 -42687352 + AluJb SINE Alu 12 301 -11 4571 218 75 71 chrX 119912578 119912883 -42687047 + Charlie7 DNA MER1_type 2275 2609 -3 282 159 16 48 chrX 119912883 119912939 -42686991 + AluJ SINE Alu 88 141 -161 2165 98 35 3 chrX 119912939 119913226 -42686704 + AluSq SINE Alu 1 296 -17 1123 125 0 6 chrX 119913229 119913389 -42686541 + AluJ SINE Alu 137 295 -7 259 246 0 0 chrX 119913435 119913496 -42686434 + MIR SINE MIR 200 260 -2 408 250 105 16 chrX 119913532 119913656 -42686274 + MIR SINE MIR 2 136 -126 633 90 0 72 chrX 119913703 119913745 -42686185 - L1MB8 LINE L1 -6 6172 6129 2041 131 3 0 chrX 119913745 119914035 -42685895 - AluSq SINE Alu -21 292 2 633 90 0 72 chrX 119914035 119914103 -42685827 - L1MB8 LINE L1 -49 6129 6070 3924 147 16 127 chrX 119914103 119915636 -42684294 - pTR5 LTR ERV1 -1 2605 1524 1590 153 109 50 chrX 119915636 119915890 -42684040 - L1MB7 LINE L1 -106 6078 5840 2553 62 0 0 chrX 119915890 119916197 -42683733 - AluY SINE Alu -4 307 1 2182 95 0 60 chrX 119916197 119916371 -42683559 - AluSx SINE Alu -14 298 150 2164 136 0 0 chrX 119916371 119916673 -42683257 - AluSx SINE Alu -9 303 2 2182 95 0 60 chrX 119916673 119916815 -42683115 - AluSx SINE Alu -162 150 1 1590 153 109 50 chrX 119916815 119916946 -42682984 - L1MB7 LINE L1 -343 5841 5676 384 265 65 59 chrX 119917180 119917350 -42682580 + MIR SINE MIR 46 216 -46 2127 113 0 0 chrX 119917587 119917861 -42682069 + AluSx SINE Alu 2 275 -37 225 0 0 0 chrX 119917865 119917890 -42682040 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1018 79 8 0 chrX 119917899 119918026 -42681904 + FLAM_C SINE Alu 2 129 -4 1393 58 0 49 chrX 119918882 119918973 -42680957 + L1PA13 LINE L1 5949 6043 -120 1691 147 53 4 chrX 119918973 119919238 -42680692 + AluSx SINE Alu 5 282 -30 1393 58 0 49 chrX 119919238 119919351 -42680579 + L1PA13 LINE L1 6043 6143 -20 2081 91 7 39 chrX 119919359 119919518 -42680412 + AluSc SINE Alu 6 152 -157 4648 79 182 36 chrX 119919518 119920239 -42679691 - LTR12 LTR ERV1 0 826 1 2081 91 7 39 chrX 119920239 119920386 -42679544 + AluSc SINE Alu 152 302 -7 271 50 0 25 chrX 119920801 119920841 -42679089 - MSTB1 LTR MaLR 0 432 394 2277 92 0 0 chrX 119920843 119921148 -42678782 + AluSx SINE Alu 1 305 0 815 172 0 0 chrX 119921155 119921283 -42678647 + FLAM_C SINE Alu 1 128 -15 1852 168 42 28 chrX 119921360 119921582 -42678348 - MSTB1 LTR MaLR -26 406 176 2274 79 10 3 chrX 119921582 119921872 -42678058 + AluSx SINE Alu 1 292 -20 1852 168 42 28 chrX 119921872 119922006 -42677924 - MSTB1 LTR MaLR -256 176 45 552 101 0 0 chrX 119922006 119922085 -42677845 - Alu SINE Alu -11 301 223 3185 221 90 26 chrX 119922204 119922353 -42677577 - MSTB1-int LTR MaLR -167 1484 1346 1801 115 4 30 chrX 119922353 119922622 -42677308 - AluJo SINE Alu -6 306 45 3185 221 90 26 chrX 119922622 119923219 -42676711 - MSTB1-int LTR MaLR -305 1346 789 1775 125 0 8 chrX 119923219 119923467 -42676463 - AluSx SINE Alu -12 300 55 1857 122 61 0 chrX 119923467 119923730 -42676200 - AluSg SINE Alu -26 284 6 3185 221 90 26 chrX 119923730 119923840 -42676090 - MSTB1-int LTR MaLR -861 790 571 496 280 125 0 chrX 119924090 119924258 -42675672 - MIR SINE MIR -29 233 45 848 142 8 0 chrX 119924479 119924613 -42675317 - FRAM SINE Alu -22 154 20 203 326 119 22 chrX 119924698 119924925 -42675005 + L2 LINE L2 2642 2890 -424 2190 82 0 3 chrX 119925863 119926182 -42673748 + AluSx SINE Alu 1 318 0 1571 182 7 19 chrX 119926327 119926634 -42673296 + AluJo SINE Alu 1 303 -9 338 214 153 0 chrX 119927090 119927188 -42672742 - L1ME4a LINE L1 -12 6109 5997 1744 142 7 11 chrX 119927202 119927527 -42672403 - AluSx SINE Alu 0 324 1 2311 74 3 3 chrX 119927533 119927832 -42672098 - AluSx SINE Alu -13 299 1 2328 86 0 3 chrX 119927966 119928280 -42671650 - AluSp SINE Alu 0 313 1 23 33 0 0 chrX 119928295 119928325 -42671605 + AT_rich Low_complexity Low_complexity 1 30 0 666 178 0 9 chrX 119928334 119928441 -42671489 - FLAM_A SINE Alu -33 109 4 2103 104 3 3 chrX 119928617 119928916 -42671014 - AluSx SINE Alu -13 299 1 310 243 14 68 chrX 119928921 119929047 -42670883 - L1ME4a LINE L1 -218 5903 5784 1986 90 0 14 chrX 119929047 119929353 -42670577 - AluSc SINE Alu 0 306 5 310 243 14 68 chrX 119929353 119929373 -42670557 - L1ME4a LINE L1 -337 5784 5764 2097 153 71 29 chrX 119929374 119929785 -42670145 + MSTA LTR MaLR 1 428 0 1003 145 54 0 chrX 119929798 119929964 -42669966 - AluJo/FRAM SINE Alu -4 308 134 1976 135 0 0 chrX 119929964 119930261 -42669669 - AluSx SINE Alu -15 297 1 749 165 8 16 chrX 119930288 119930409 -42669521 + FLAM_C SINE Alu 2 121 -22 266 26 53 0 chrX 119930409 119930447 -42669483 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1976 116 3 10 chrX 119930453 119930745 -42669185 + AluSg SINE Alu 1 290 -20 772 161 0 0 chrX 119930748 119930866 -42669064 - AluJo/FLAM SINE Alu -189 123 6 575 292 75 7 chrX 119930874 119931181 -42668749 - L1ME4a LINE L1 -362 5759 5414 980 310 112 25 chrX 119931200 119931434 -42668496 - L2 LINE L2 0 3313 3101 2234 109 0 0 chrX 119931434 119931737 -42668193 + AluSx SINE Alu 2 304 -8 980 310 112 25 chrX 119931737 119932224 -42667706 - L2 LINE L2 -212 3101 2544 2396 122 74 45 chrX 119932257 119932662 -42667268 + MSTB2 LTR MaLR 1 422 -35 1785 96 78 32 chrX 119932662 119932943 -42666987 - AluSg SINE Alu -16 294 1 2396 122 74 45 chrX 119932943 119932981 -42666949 + MSTB2 LTR MaLR 422 457 0 5741 185 43 115 chrX 119933186 119933235 -42666695 - L1MB7 LINE L1 -2 6182 6131 2266 74 7 0 chrX 119933235 119933532 -42666398 - AluSp SINE Alu -14 299 1 5741 185 43 115 chrX 119933532 119933859 -42666071 - L1MB7 LINE L1 -53 6131 5782 2164 124 0 0 chrX 119933859 119934165 -42665765 - AluSx SINE Alu -6 306 1 5741 185 43 115 chrX 119934165 119935000 -42664930 - L1MB7 LINE L1 -402 5782 4889 1905 153 0 3 chrX 119935000 119935301 -42664629 - AluJb SINE Alu -12 300 1 5741 185 43 115 chrX 119935301 119935349 -42664581 - L1MB7 LINE L1 -1295 4889 4839 1651 139 0 49 chrX 119935349 119935636 -42664294 - AluJo SINE Alu -39 273 1 5741 185 43 115 chrX 119935636 119935762 -42664168 - L1MB7 LINE L1 -1345 4839 4706 1622 151 163 19 chrX 119935762 119936081 -42663849 + MLT1A1 LTR MaLR 1 365 0 5741 185 43 115 chrX 119936081 119936505 -42663425 - L1MB7 LINE L1 -1478 4706 4253 2023 143 0 0 chrX 119936505 119936813 -42663117 - AluSx SINE Alu -4 308 1 5741 185 43 115 chrX 119936813 119937387 -42662543 - L1MB7 LINE L1 -1931 4253 3639 856 154 0 0 chrX 119937387 119937523 -42662407 - FLAM_C SINE Alu -2 141 6 5741 185 43 115 chrX 119937523 119938026 -42661904 - L1MB7 LINE L1 -2545 3639 3102 2156 102 0 7 chrX 119938026 119938320 -42661610 + AluSg SINE Alu 1 292 -18 5741 185 43 115 chrX 119938320 119938721 -42661209 - L1MB7 LINE L1 -3082 3102 3071 940 125 0 0 chrX 119938721 119938849 -42661081 - FLAM_C SINE Alu -5 128 1 5741 185 43 115 chrX 119938849 119939294 -42660636 - L1MB7 LINE L1 -3113 3071 2596 407 274 32 51 chrX 119939495 119939652 -42660278 + L2 LINE L2 2865 3018 -254 1699 159 0 10 chrX 119939754 119940043 -42659887 + AluJb SINE Alu 5 290 -22 2152 92 0 16 chrX 119940064 119940368 -42659562 + AluSg1 SINE Alu 1 299 -10 1857 89 0 30 chrX 119940378 119940648 -42659282 + AluSg SINE Alu 49 310 0 2124 98 10 3 chrX 119940670 119940967 -42658963 + AluSc SINE Alu 1 299 -10 2358 62 3 16 chrX 119940967 119941275 -42658655 + AluY SINE Alu 1 304 -7 2038 118 0 0 chrX 119942111 119942544 -42657386 - AluSg SINE Alu 0 435 3 226 137 20 0 chrX 119942556 119942607 -42657323 - L1MB7 LINE L1 -1 6183 6132 189 74 0 0 chrX 119942707 119942734 -42657196 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1154 113 0 0 chrX 119942736 119942895 -42657035 - AluSg SINE Alu -31 279 121 523 76 0 0 chrX 119942898 119942964 -42656966 - AluSg SINE Alu -244 67 2 2169 97 0 0 chrX 119943076 119943374 -42656556 - AluY SINE Alu -13 298 1 2229 109 0 0 chrX 119944336 119944638 -42655292 + AluSg SINE Alu 1 302 -8 549 330 77 35 chrX 119944952 119945237 -42654693 + L2 LINE L2 2976 3272 0 1806 129 23 10 chrX 119945680 119945983 -42653947 + AluJo SINE Alu 1 307 -5 1502 139 8 19 chrX 119945990 119946248 -42653682 + AluJb SINE Alu 2 256 -56 2172 90 0 0 chrX 119946356 119946644 -42653286 + AluSg SINE Alu 1 288 -22 253 323 8 8 chrX 119946944 119947068 -42652862 + L1P LINE L1 5255 5378 -773 662 213 0 37 chrX 119947132 119947268 -42652662 - MER63 DNA MER1_type -78 758 2 2320 283 83 63 chrX 119947271 119947344 -42652586 + L2 LINE L2 1623 1693 -1620 1987 147 0 0 chrX 119947344 119947656 -42652274 - AluSx SINE Alu 0 312 1 2320 283 83 63 chrX 119947656 119947942 -42651988 + L2 LINE L2 1693 1972 -1341 959 104 0 15 chrX 119947942 119948076 -42651854 - FLAM_C SINE Alu -1 132 1 2320 283 83 63 chrX 119948076 119948956 -42650974 + L2 LINE L2 1972 2893 -420 1765 149 6 50 chrX 119948956 119949278 -42650652 - AluJo SINE Alu 0 312 5 2320 283 83 63 chrX 119949278 119949708 -42650222 + L2 LINE L2 2893 3313 0 1986 172 88 72 chrX 119949809 119949996 -42649934 + MLT2B1 LTR ERVL 1 184 -336 1492 168 0 43 chrX 119949996 119950300 -42649630 + AluJo SINE Alu 1 291 -21 1986 172 88 72 chrX 119950300 119950375 -42649555 + MLT2B1 LTR ERVL 184 256 -264 2183 101 0 0 chrX 119950375 119950672 -42649258 - AluSx SINE Alu -15 297 1 1986 172 88 72 chrX 119950672 119950920 -42649010 + MLT2B1 LTR ERVL 256 520 0 2355 88 0 0 chrX 119951207 119951514 -42648416 - AluSc SINE Alu -2 307 1 2220 84 0 7 chrX 119951514 119951811 -42648119 - AluSc SINE Alu -14 295 1 285 225 75 42 chrX 119951998 119952118 -42647812 - L1ME3A LINE L1 -5 6165 6042 294 29 0 0 chrX 119952186 119952221 -42647709 + (TG)n Simple_repeat Simple_repeat 2 36 0 288 135 19 0 chrX 119952294 119952346 -42647584 - L1PA16 LINE L1 -21 6145 6093 2246 86 0 7 chrX 119952362 119952663 -42647267 - AluSx SINE Alu -7 305 7 269 297 8 162 chrX 119952912 119952978 -42646952 + L2 LINE L2 2601 2676 -638 1747 89 0 8 chrX 119952978 119953213 -42646717 - AluSc SINE Alu -76 233 1 269 297 8 162 chrX 119953213 119953323 -42646607 + L2 LINE L2 2676 2725 -589 540 288 22 11 chrX 119953323 119953507 -42646423 - MER5A DNA MER1_type 0 189 4 269 297 8 162 chrX 119953507 119953595 -42646335 + L2 LINE L2 2725 2825 -489 320 233 27 153 chrX 119953611 119953699 -42646231 + L2 LINE L2 2563 2660 -654 930 186 19 0 chrX 119953699 119953855 -42646075 - FRAM SINE Alu -7 159 1 320 233 27 153 chrX 119953855 119953935 -42645995 + L2 LINE L2 2660 2699 -615 2106 118 0 0 chrX 119953935 119954231 -42645699 + AluSx SINE Alu 1 296 -16 320 233 27 153 chrX 119954231 119954284 -42645646 + L2 LINE L2 2699 2757 -557 207 0 0 0 chrX 119954674 119954697 -42645233 + (T)n Simple_repeat Simple_repeat 1 23 0 450 330 119 44 chrX 119954821 119955251 -42644679 + L2 LINE L2 2810 3271 -1 1935 103 48 106 chrX 119955265 119955476 -42644454 - THE1C LTR MaLR 0 375 196 2054 128 0 0 chrX 119955476 119955772 -42644158 + AluSx SINE Alu 1 296 -16 1935 103 48 106 chrX 119955772 119955957 -42643973 - THE1C LTR MaLR -179 196 2 966 198 39 0 chrX 119956188 119956370 -42643560 - MER5A DNA MER1_type 0 189 1 218 296 12 25 chrX 119956515 119956587 -42643343 + CT-rich Low_complexity Low_complexity 1 73 -7 2062 91 35 3 chrX 119956587 119956872 -42643058 - AluSx SINE Alu -18 294 1 270 229 115 0 chrX 119957297 119957358 -42642572 - L2 LINE L2 0 3272 3205 1771 114 49 52 chrX 119957591 119957899 -42642031 + AluSg1 SINE Alu 1 307 -2 402 278 12 6 chrX 119958037 119958206 -42641724 + (CA)n Simple_repeat Simple_repeat 2 171 0 681 305 27 100 chrX 119960567 119960990 -42638940 - L2 LINE L2 -5 3267 2887 597 222 157 0 chrX 119960990 119961143 -42638787 + MER69A DNA AcHobo 1 177 0 681 305 27 100 chrX 119961143 119961240 -42638690 - L2 LINE L2 -385 2887 2784 645 327 100 30 chrX 119961256 119961754 -42638176 - L2 LINE L2 -748 2566 2034 2105 108 3 0 chrX 119961763 119962059 -42637871 + AluSx SINE Alu 1 297 -15 2205 96 0 19 chrX 119962343 119962657 -42637273 - AluY SINE Alu -3 308 1 2088 93 6 47 chrX 119962732 119963054 -42636876 - AluSx SINE Alu -3 309 1 2083 116 0 7 chrX 119963626 119963929 -42636001 + AluSx SINE Alu 1 301 -11 782 212 44 100 chrX 119963987 119964237 -42635693 + MIR SINE MIR 13 248 -14 267 364 33 7 chrX 119964312 119964463 -42635467 - L2 LINE L2 -1345 1969 1815 1124 286 71 24 chrX 119964471 119965641 -42634289 + L1MC4a LINE L1 4778 6017 -104 2346 60 0 7 chrX 119965657 119965957 -42633973 - AluY SINE Alu -13 298 1 1759 168 3 3 chrX 119965994 119966292 -42633638 + AluJo SINE Alu 7 304 -8 186 362 0 0 chrX 119966491 119966538 -42633392 - L2 LINE L2 -24 3289 3243 2318 94 0 0 chrX 119966555 119966864 -42633066 - AluSx SINE Alu -3 309 1 2250 93 0 6 chrX 119966883 119967195 -42632735 - AluSg SINE Alu 0 310 1 542 82 0 0 chrX 119967196 119967269 -42632661 - L1M4 LINE L1 -393 5781 5709 802 271 49 35 chrX 119967292 119967576 -42632354 + L2 LINE L2 2873 3160 -153 2082 202 72 0 chrX 119967593 119968039 -42631891 - Charlie4a DNA MER1_type -17 491 14 255 342 102 34 chrX 119968143 119968409 -42631521 - L2 LINE L2 -2799 515 232 245 313 0 0 chrX 119968475 119968539 -42631391 - L2 LINE L2 -33 3239 3176 609 174 0 0 chrX 119969004 119969102 -42630828 + AluSg/x SINE Alu 196 293 -19 1891 126 3 3 chrX 119969706 119970014 -42629916 - AluSx SINE Alu 0 308 1 214 328 136 43 chrX 119970331 119970654 -42629276 - L2 LINE L2 -89 3183 2831 554 242 7 28 chrX 119971362 119971505 -42628425 - MIR SINE MIR -62 146 36 2040 118 3 0 chrX 119971577 119971865 -42628065 + AluSx SINE Alu 1 289 -23 1984 113 7 0 chrX 119972102 119972410 -42627520 - AluSp SINE Alu 0 310 1 1054 228 51 8 chrX 119973323 119973560 -42626370 + MIR SINE MIR 15 261 -1 2123 115 4 0 chrX 119973926 119974205 -42625725 - AluJo SINE Alu -26 286 7 21 0 0 0 chrX 119974212 119974233 -42625697 + AT_rich Low_complexity Low_complexity 1 21 0 599 168 0 0 chrX 119974283 119974378 -42625552 - AluSg/x SINE Alu 0 310 216 2131 89 92 3 chrX 119974407 119974689 -42625241 + AluSx SINE Alu 1 307 -5 988 192 0 90 chrX 119975790 119975848 -42624082 + AluJb SINE Alu 87 149 -163 2281 98 3 0 chrX 119975848 119976143 -42623787 + AluSp SINE Alu 1 296 -17 988 192 0 90 chrX 119976143 119976329 -42623601 + AluJb SINE Alu 149 309 -3 325 114 34 52 chrX 119976332 119976468 -42623462 + GA-rich Low_complexity Low_complexity 1 133 0 1179 119 0 24 chrX 119976554 119976722 -42623208 - AluJb SINE Alu -16 296 133 936 169 116 153 chrX 119977904 119977971 -42621959 + MLT1A1 LTR MaLR 1 69 -296 2445 76 0 13 chrX 119977971 119978106 -42621824 + AluSc SINE Alu 1 136 -173 2333 90 3 0 chrX 119978106 119978396 -42621534 + AluSp SINE Alu 3 293 -20 2445 76 0 13 chrX 119978396 119978564 -42621366 + AluSc SINE Alu 136 300 -9 936 169 116 153 chrX 119978564 119978593 -42621337 + MLT1A1 LTR MaLR 69 98 -267 2463 80 0 3 chrX 119978593 119978893 -42621037 + AluSq SINE Alu 1 299 -14 936 169 116 153 chrX 119978893 119978941 -42620989 + MLT1A1 LTR MaLR 98 146 -219 2378 68 0 17 chrX 119978941 119979234 -42620696 - AluSg1 SINE Alu -21 288 1 936 169 116 153 chrX 119979234 119979466 -42620464 + MLT1A1 LTR MaLR 146 365 0 283 316 88 15 chrX 119980048 119980184 -42619746 + MIR SINE MIR 87 232 -30 545 276 97 16 chrX 119981286 119981471 -42618459 + MIR SINE MIR 50 249 -13 732 116 16 16 chrX 119981597 119981718 -42618212 - AluSg/x SINE Alu -4 306 186 416 315 91 0 chrX 119981718 119981861 -42618069 + L2 LINE L2 3117 3272 0 247 209 0 0 chrX 119982232 119982275 -42617655 - L2 LINE L2 -7 3306 3264 274 287 51 45 chrX 119982301 119982458 -42617472 + L2 LINE L2 3146 3303 -10 231 286 0 0 chrX 119983406 119983469 -42616461 + L1ME3A LINE L1 5693 5755 -604 1192 38 0 0 chrX 119983482 119983613 -42616317 + AluSc SINE Alu 1 131 -178 2210 105 20 26 chrX 119983689 119983994 -42615936 + AluSx SINE Alu 1 303 -9 254 307 107 0 chrX 119984163 119984313 -42615617 + L1ME3A LINE L1 5990 6155 -15 412 282 56 72 chrX 119985529 119985724 -42614206 + L2 LINE L2 445 636 -2678 298 254 0 0 chrX 119985727 119985782 -42614148 + MIR SINE MIR 39 93 -169 438 312 95 82 chrX 119985798 119986101 -42613829 + L2 LINE L2 2952 3261 -11 1410 56 0 0 chrX 119986101 119986281 -42613649 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 438 312 95 82 chrX 119986281 119986294 -42613636 + L2 LINE L2 3261 3272 0 300 53 0 0 chrX 119986786 119986824 -42613106 + (CAGCC)n Simple_repeat Simple_repeat 5 42 0 1210 341 90 30 chrX 119987803 119988680 -42611250 + L2 LINE L2 1546 2475 -839 2445 107 0 0 chrX 119988764 119989074 -42610856 - AluSx SINE Alu -2 310 1 234 278 11 56 chrX 119989107 119989197 -42610733 + L2 LINE L2 2664 2749 -565 2369 86 0 7 chrX 119989414 119989716 -42610214 - AluSx SINE Alu -12 300 1 233 318 16 78 chrX 119989756 119989885 -42610045 + L2 LINE L2 3143 3263 -9 733 246 39 11 chrX 119989921 119990100 -42609830 + MIR3 SINE MIR 1 184 -24 2783 107 62 0 chrX 119990454 119990873 -42609057 + L1PA10 LINE L1 5465 5909 -259 2344 121 0 0 chrX 119990873 119991179 -42608751 + AluSx SINE Alu 1 306 -6 2589 37 0 3 chrX 119991305 119991599 -42608331 + AluY SINE Alu 1 293 -18 1623 147 79 18 chrX 119991606 119991740 -42608190 + AluJo SINE Alu 4 128 -184 2341 113 0 6 chrX 119991740 119992051 -42607879 + AluSg SINE Alu 1 309 -1 1623 147 79 18 chrX 119992051 119992195 -42607735 + AluJo SINE Alu 128 299 -13 2456 94 0 0 chrX 119992321 119992630 -42607300 + AluY SINE Alu 1 309 -2 2054 97 15 0 chrX 119992892 119993160 -42606770 - AluSg SINE Alu -12 298 27 330 89 0 0 chrX 119993184 119993229 -42606701 - AluSg SINE Alu -258 45 1 595 202 30 99 chrX 119993492 119993663 -42606267 + MIR SINE MIR 74 228 -34 2197 112 0 0 chrX 119993663 119993950 -42605980 - AluSx SINE Alu -12 300 14 595 202 30 99 chrX 119993950 119993982 -42605948 + MIR SINE MIR 228 261 -1 218 283 17 0 chrX 119994758 119994818 -42605112 + GA-rich Low_complexity Low_complexity 5 65 0 1859 122 53 43 chrX 119994851 119994995 -42604935 + AluSx SINE Alu 1 142 -170 2589 57 0 3 chrX 119994995 119995296 -42604634 + AluY SINE Alu 1 300 -11 1833 99 0 0 chrX 119995296 119995527 -42604403 + AluSg/x SINE Alu 71 303 -7 1859 122 53 43 chrX 119995527 119995684 -42604246 + AluSx SINE Alu 141 306 -6 2233 97 40 3 chrX 119995712 119996012 -42603918 + AluSx SINE Alu 1 311 -1 2253 115 7 0 chrX 119996814 119997109 -42602821 + AluSx SINE Alu 1 297 -15 2001 141 3 29 chrX 119997950 119998256 -42601674 + AluJb SINE Alu 1 298 -14 2179 108 0 10 chrX 119998788 119999084 -42600846 + AluSq SINE Alu 1 293 -20 2421 60 4 0 chrX 119999326 119999655 -42600275 + AluSp SINE Alu 1 330 0 2356 104 0 3 chrX 119999934 120000242 -42599688 - AluSx SINE Alu -2 310 4 691 209 82 37 chrX 120000332 120000600 -42599330 - L1MC5 LINE L1 -120 7841 7562 239 319 0 14 chrX 120000938 120001007 -42598923 + L2 LINE L2 3223 3290 -23 196 51 26 26 chrX 120001736 120001775 -42598155 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 250 241 35 23 chrX 120001775 120001862 -42598068 - MIR SINE MIR -55 207 120 890 103 0 0 chrX 120001862 120001979 -42597951 + AluJb SINE Alu 1 117 -195 22 0 0 0 chrX 120001980 120002002 -42597928 + AT_rich Low_complexity Low_complexity 1 22 0 2367 98 0 0 chrX 120002009 120002305 -42597625 + AluSx SINE Alu 1 296 -16 432 0 0 0 chrX 120002306 120002354 -42597576 + (CA)n Simple_repeat Simple_repeat 2 49 0 216 267 114 23 chrX 120002356 120002444 -42597486 + MIR SINE MIR 53 147 -62 184 87 0 43 chrX 120002796 120002842 -42597088 + (TGG)n Simple_repeat Simple_repeat 2 45 0 2247 93 3 7 chrX 120002879 120003181 -42596749 + AluSq SINE Alu 1 301 -12 2583 64 0 3 chrX 120003182 120003494 -42596436 + AluY SINE Alu 1 311 0 398 328 16 0 chrX 120005997 120006119 -42593811 - MIR SINE MIR -57 151 28 195 330 19 28 chrX 120006294 120006400 -42593530 + MER5A DNA MER1_type 80 184 -5 489 34 0 0 chrX 120006651 120006710 -42593220 + (CA)n Simple_repeat Simple_repeat 2 60 0 1974 93 8 0 chrX 120008913 120009171 -42590759 + AluSp SINE Alu 48 307 -6 2372 110 0 0 chrX 120009327 120009628 -42590302 + AluSx SINE Alu 1 301 -11 998 172 56 37 chrX 120009653 120009868 -42590062 - MER20 DNA MER1_type 0 219 1 1924 127 10 36 chrX 120009891 120010198 -42589732 - AluJo SINE Alu -13 299 1 953 178 39 0 chrX 120010198 120010378 -42589552 - MER58B DNA MER1_type -9 332 146 2108 134 7 0 chrX 120010385 120010692 -42589238 - AluJo SINE Alu -2 310 2 1144 92 7 0 chrX 120010758 120010910 -42589020 - AluSq SINE Alu -158 155 3 1991 136 10 3 chrX 120011218 120011512 -42588418 - AluJb SINE Alu -16 296 1 1841 119 0 8 chrX 120011668 120011920 -42588010 + AluSx SINE Alu 1 250 -62 2156 100 14 3 chrX 120011958 120012247 -42587683 - AluSc SINE Alu -17 292 1 309 163 21 142 chrX 120012259 120012304 -42587626 - L1MC4 LINE L1 -17 8025 7976 2328 92 31 0 chrX 120012304 120012598 -42587332 + AluSp SINE Alu 1 303 -10 309 163 21 142 chrX 120012598 120012693 -42587237 - L1MC4 LINE L1 -66 7976 7902 330 215 153 60 chrX 120012715 120013355 -42586575 - L1MC4 LINE L1 -229 7813 6959 2372 66 3 30 chrX 120013587 120013890 -42586040 + AluSg1 SINE Alu 1 295 -14 2586 80 0 0 chrX 120013954 120014265 -42585665 - AluSx SINE Alu -1 311 1 1026 195 46 134 chrX 120014755 120015165 -42584765 - MLT1A2 LTR MaLR 0 374 1 324 246 145 22 chrX 120015269 120015407 -42584523 - L2 LINE L2 0 3313 3159 545 294 51 10 chrX 120015702 120015899 -42584031 - MIR3 SINE MIR -1 207 3 2539 69 0 3 chrX 120015913 120016219 -42583711 - AluSx SINE Alu -7 305 1 240 172 0 0 chrX 120017847 120017905 -42582025 + (CCG)n Simple_repeat Simple_repeat 2 59 0 237 291 6 61 chrX 120018061 120018226 -42581704 + G-rich Low_complexity Low_complexity 3 158 0 202 139 23 0 chrX 120018813 120018856 -42581074 + (TG)n Simple_repeat Simple_repeat 2 45 0 264 30 0 0 chrX 120019090 120019123 -42580807 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 588 239 15 8 chrX 120019561 120019695 -42580235 + L2 LINE L2 3179 3313 0 427 254 167 20 chrX 120019693 120019905 -42580025 - MIR3 SINE MIR -13 249 2 * 2202 120 3 0 chrX 120020481 120020781 -42579149 - AluSx SINE Alu -11 301 1 1083 179 11 6 chrX 120021082 120021261 -42578669 - MER5A DNA MER1_type -9 180 1 878 150 0 0 chrX 120021925 120022058 -42577872 - AluJb SINE Alu -179 133 1 2429 84 3 3 chrX 120022072 120022383 -42577547 - AluSp SINE Alu -2 311 1 1979 135 33 10 chrX 120022391 120022695 -42577235 - AluSx SINE Alu -1 311 1 1700 124 113 4 chrX 120022869 120023135 -42576795 + AluSx SINE Alu 1 295 -17 2156 110 13 0 chrX 120023402 120023703 -42576227 - AluSx SINE Alu -7 305 1 2261 113 0 0 chrX 120024006 120024297 -42575633 + AluSg SINE Alu 1 291 -19 1624 155 74 15 chrX 120024353 120024624 -42575306 - AluJb SINE Alu -25 287 1 2516 75 3 3 chrX 120025308 120025616 -42574314 - AluSp SINE Alu -5 308 1 2333 92 0 0 chrX 120025689 120026002 -42573928 - AluSq SINE Alu 0 313 1 2421 94 0 3 chrX 120026506 120026813 -42573117 + AluSx SINE Alu 1 306 -6 1794 137 7 63 chrX 120026813 120027112 -42572818 - AluJb SINE Alu -30 282 1 723 240 90 54 chrX 120027153 120027674 -42572256 - L1MC5 LINE L1 -50 7911 7372 397 127 28 0 chrX 120027829 120027900 -42572030 - L1MD2 LINE L1 -2 6357 6285 1979 123 32 0 chrX 120027900 120028185 -42571745 + AluSg SINE Alu 1 294 -16 3207 159 43 39 chrX 120028185 120028403 -42571527 - L1MC/D LINE L1 -536 5823 5607 2419 80 3 0 chrX 120028403 120028704 -42571226 - AluSp SINE Alu -11 302 1 3207 159 43 39 chrX 120028704 120028830 -42571100 - L1MC/D LINE L1 -752 5607 5483 2531 87 0 0 chrX 120028830 120029140 -42570790 - AluSg SINE Alu 0 310 1 3207 159 43 39 chrX 120029140 120029434 -42570496 - L1MC/D LINE L1 -876 5483 5192 2019 127 6 38 chrX 120029434 120029748 -42570182 - AluSx SINE Alu -8 304 1 3207 159 43 39 chrX 120029748 120030114 -42569816 - L1MC/D LINE L1 -1167 5192 4817 364 167 55 73 chrX 120030117 120030163 -42569767 - L1MC4 LINE L1 -733 7228 7183 2336 108 0 0 chrX 120030163 120030470 -42569460 - AluSx SINE Alu -2 310 4 364 167 55 73 chrX 120030470 120030993 -42568937 - L1MC4 LINE L1 -778 7183 6697 2241 109 3 0 chrX 120035861 120036163 -42563767 - AluSq SINE Alu -10 303 1 1144 161 202 8 chrX 120036445 120036688 -42563242 - AluJo SINE Alu -10 292 3 2431 87 0 10 chrX 120038336 120038646 -42561284 + AluSg SINE Alu 1 307 -3 2191 97 7 23 chrX 120038851 120039150 -42560780 - AluSc SINE Alu -14 295 2 848 137 8 23 chrX 120040838 120040969 -42558961 - FLAM_C SINE Alu -3 130 2 425 242 40 27 chrX 120041717 120041866 -42558064 - MER5B DNA MER1_type -26 152 2 762 260 5 5 chrX 120044093 120044285 -42555645 + MIR SINE MIR 1 192 -70 344 265 12 0 chrX 120045115 120045198 -42554732 - Charlie8 DNA MER1_type -2333 84 1 22 0 0 0 chrX 120045367 120045389 -42554541 + AT_rich Low_complexity Low_complexity 1 22 0 2344 105 0 3 chrX 120045859 120046165 -42553765 + AluSq SINE Alu 1 305 -8 2382 88 0 3 chrX 120046579 120046887 -42553043 + AluSg SINE Alu 2 308 -2 216 0 0 0 chrX 120047272 120047296 -42552634 + (TG)n Simple_repeat Simple_repeat 2 25 0 656 165 197 60 chrX 120047420 120047638 -42552292 + L1MD2 LINE L1 6110 6357 -2 192 200 0 0 chrX 120049521 120049571 -42550359 + T-rich Low_complexity Low_complexity 1 50 0 213 39 0 0 chrX 120049945 120049971 -42549959 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 282 340 149 9 chrX 120050381 120050702 -42549228 - L2 LINE L2 -675 2639 2274 2246 189 2 26 chrX 120051016 120051440 -42548490 - MLT1E3 LTR MaLR -210 414 1 192 77 0 0 chrX 120051468 120051494 -42548436 + (T)n Simple_repeat Simple_repeat 1 26 0 411 145 0 0 chrX 120051519 120051581 -42548349 - Tigger4(Zombi) DNA MER2_type -2669 62 1 2623 61 0 0 chrX 120051950 120052261 -42547669 + AluY SINE Alu 1 311 0 1962 129 30 7 chrX 120052277 120052579 -42547351 + AluSx SINE Alu 1 309 -3 2220 100 19 10 chrX 120052770 120053080 -42546850 + AluSp SINE Alu 1 313 0 731 183 8 0 chrX 120053418 120053549 -42546381 + FLAM_C SINE Alu 1 132 -1 2332 88 0 7 chrX 120054022 120054318 -42545612 + AluSx SINE Alu 1 294 -18 2138 166 73 49 chrX 120054367 120054860 -42545070 + MLT1D LTR MaLR 1 505 0 472 210 92 17 chrX 120054915 120055034 -42544896 + Cheshire DNA MER1_type 1 128 -2292 * 3723 165 137 102 chrX 120055033 120055170 -42544760 + Cheshire DNA MER1_type 561 692 -1728 1974 114 0 80 chrX 120055170 120055284 -42544646 + AluSg SINE Alu 1 123 -187 2717 42 0 0 chrX 120055284 120055594 -42544336 + AluY SINE Alu 1 310 -1 1974 114 0 80 chrX 120055594 120055804 -42544126 + AluSg SINE Alu 123 299 -11 3723 165 137 102 chrX 120055804 120056028 -42543902 + Cheshire DNA MER1_type 692 907 -1513 1916 154 3 13 chrX 120056028 120056334 -42543596 + AluJo SINE Alu 1 303 -9 3723 165 137 102 chrX 120056334 120056447 -42543483 + Cheshire DNA MER1_type 907 1015 -1405 2217 98 0 67 chrX 120056447 120056774 -42543156 + AluSx SINE Alu 1 305 -7 3723 165 137 102 chrX 120056774 120057066 -42542864 + Cheshire DNA MER1_type 1015 1295 -1125 639 85 0 0 chrX 120057066 120057148 -42542782 + AluSg SINE Alu 1 82 -228 3723 165 137 102 chrX 120057148 120057481 -42542449 + Cheshire DNA MER1_type 1295 1785 -635 2829 123 43 17 chrX 120057481 120057944 -42541986 + L1MB7 LINE L1 5686 6160 -24 212 0 36 0 chrX 120058037 120058065 -42541865 + (TA)n Simple_repeat Simple_repeat 1 29 0 186 133 0 0 chrX 120058101 120058131 -42541799 + (TA)n Simple_repeat Simple_repeat 1 30 0 2484 266 56 30 chrX 120058905 120059297 -42540633 + L2 LINE L2 1667 2047 -1267 2387 66 0 3 chrX 120059297 120059586 -42540344 - AluSg SINE Alu -22 288 1 2484 266 56 30 chrX 120059586 120060074 -42539856 + L2 LINE L2 2047 2570 -744 1023 80 87 27 chrX 120060076 120060226 -42539704 - AluSg/x SINE Alu -19 293 135 2526 75 3 0 chrX 120060227 120060534 -42539396 - AluSq SINE Alu -5 308 1 1389 256 110 29 chrX 120060535 120061096 -42538834 + L2 LINE L2 2559 3218 -95 2163 89 45 17 chrX 120061096 120061250 -42538680 - AluSq SINE Alu -13 300 152 2448 74 0 3 chrX 120061250 120061549 -42538381 - AluSp SINE Alu -13 300 3 2163 89 45 17 chrX 120061549 120061686 -42538244 - AluSq SINE Alu -161 152 1 1389 256 110 29 chrX 120061686 120061791 -42538139 + L2 LINE L2 3218 3313 0 399 318 78 0 chrX 120061844 120061998 -42537932 + MIR SINE MIR 49 214 -48 2093 104 9 28 chrX 120062100 120062418 -42537512 - AluSx SINE Alu 0 312 1 1002 98 15 0 chrX 120062548 120062680 -42537250 - AluSx SINE Alu -14 296 163 683 109 0 0 chrX 120062680 120062772 -42537158 - AluSx SINE Alu -219 93 2 1031 179 0 22 chrX 120062777 120062956 -42536974 - FAM SINE Alu 0 175 1 424 244 77 13 chrX 120063086 120063242 -42536688 - MIR3 SINE MIR -3 205 40 2170 110 0 20 chrX 120063733 120064034 -42535896 - AluSx SINE Alu -17 295 1 264 356 109 40 chrX 120064089 120064437 -42535493 - L2 LINE L2 -5 3267 2896 2333 78 7 3 chrX 120064571 120064866 -42535064 - AluSq SINE Alu -17 296 1 319 153 0 82 chrX 120065159 120065244 -42534686 - L2 LINE L2 0 3313 3236 2476 60 0 10 chrX 120065250 120065548 -42534382 - AluY SINE Alu -16 295 1 1879 184 58 56 chrX 120065553 120065594 -42534336 - MLT1C LTR MaLR 0 467 428 2191 119 3 7 chrX 120065594 120065896 -42534034 + AluSx SINE Alu 3 303 -9 1879 184 58 56 chrX 120065896 120066288 -42533642 - MLT1C LTR MaLR -39 428 24 243 88 0 0 chrX 120066288 120066322 -42533608 + (T)n Simple_repeat Simple_repeat 1 34 0 1196 120 0 0 chrX 120066327 120066485 -42533445 - AluJb SINE Alu -154 158 1 1566 125 0 0 chrX 120066615 120066831 -42533099 - AluSg/x SINE Alu 0 310 95 335 366 76 0 chrX 120066838 120067155 -42532775 + L2 LINE L2 2034 2374 -940 2442 50 0 0 chrX 120067201 120067481 -42532449 - AluY SINE Alu -13 298 19 450 266 192 39 chrX 120067578 120067890 -42532040 + MLT1J LTR MaLR 142 501 -10 384 341 47 55 chrX 120067890 120068271 -42531659 + L2 LINE L2 2395 2772 -542 2382 202 29 25 chrX 120068545 120068679 -42531251 - MLT1F LTR MaLR -50 492 360 2118 131 0 7 chrX 120068679 120068976 -42530954 - AluJo SINE Alu -17 295 1 2382 202 29 25 chrX 120068976 120069331 -42530599 - MLT1F LTR MaLR -182 360 1 2487 78 0 0 chrX 120069345 120069638 -42530292 - AluSx SINE Alu -19 293 1 200 262 82 0 chrX 120070289 120070350 -42529580 + MIR SINE MIR 81 146 -116 286 332 40 7 chrX 120070351 120070500 -42529430 + L1ME LINE L1 5483 5639 -531 201 273 0 146 chrX 120070517 120070627 -42529303 - MER5A DNA MER1_type -1 188 95 2102 115 39 0 chrX 120070634 120070920 -42529010 - AluSx SINE Alu -15 297 1 477 165 12 0 chrX 120070939 120071024 -42528906 - L1MB7 LINE L1 -19 6165 6080 2404 158 68 23 chrX 120071033 120071462 -42528468 + MER21A LTR ERV1 236 683 -248 1011 131 0 14 chrX 120071463 120071608 -42528322 + AluSq/x SINE Alu 1 143 -169 2078 113 27 7 chrX 120071608 120071900 -42528030 + AluSc SINE Alu 1 298 -11 1582 149 8 15 chrX 120071900 120072162 -42527768 + MER21A LTR ERV1 672 931 0 2315 100 7 3 chrX 120072301 120072602 -42527328 - AluSq SINE Alu -11 302 1 4306 191 12 8 chrX 120072602 120072838 -42527092 - L1M4 LINE L1 -820 5326 5093 1850 162 7 20 chrX 120072838 120073141 -42526789 + AluSx SINE Alu 1 299 -13 4306 191 12 8 chrX 120073141 120073818 -42526112 - L1M4 LINE L1 -1053 5093 4409 611 138 11 0 chrX 120073814 120073908 -42526022 - L1M4 LINE L1 -2029 4117 4023 * 1185 217 126 12 chrX 120073915 120074252 -42525678 + MSTD LTR MaLR 1 395 -1 568 191 115 13 chrX 120074262 120074419 -42525511 - L1M4 LINE L1 -2120 4026 3854 6123 114 44 32 chrX 120074420 120075238 -42524692 - L1MA9 LINE L1 0 6312 5505 2230 90 3 7 chrX 120075238 120075548 -42524382 - AluSc SINE Alu 0 309 1 6123 114 44 32 chrX 120075548 120075601 -42524329 - L1MA9 LINE L1 -807 5505 5454 2037 121 0 0 chrX 120075601 120075911 -42524019 - AluSx SINE Alu 0 310 1 6123 114 44 32 chrX 120075911 120076062 -42523868 - L1MA9 LINE L1 -858 5454 5276 1074 245 115 9 chrX 120076188 120076510 -42523420 + L1MC4a LINE L1 5293 5648 -2160 300 208 132 88 chrX 120076528 120076687 -42523243 + L1MC4a LINE L1 5777 5942 -1866 715 287 16 32 chrX 120076877 120077124 -42522806 - L2 LINE L2 -655 2659 2417 949 202 16 83 chrX 120077166 120077343 -42522587 + MIR SINE MIR 28 185 -77 2191 107 0 0 chrX 120077343 120077642 -42522288 - AluSx SINE Alu -13 299 1 949 202 16 83 chrX 120077642 120077716 -42522214 + MIR SINE MIR 185 262 0 208 250 0 0 chrX 120077800 120077844 -42522086 + L2 LINE L2 3224 3267 -5 2375 57 13 0 chrX 120077887 120078186 -42521744 - AluSp SINE Alu -10 303 1 2068 112 3 0 chrX 120078433 120078729 -42521201 - AluSx SINE Alu -15 297 1 2259 92 0 0 chrX 120078848 120079142 -42520788 - AluSq SINE Alu -19 294 1 234 193 0 0 chrX 120079548 120079605 -42520325 + T-rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chrX 120079623 120079651 -42520279 + AT_rich Low_complexity Low_complexity 1 28 0 774 82 55 0 chrX 120079654 120079764 -42520166 - L1MA2 LINE L1 -7 6297 6182 1762 152 17 7 chrX 120080019 120080308 -42519622 + AluJo SINE Alu 1 292 -20 2173 89 10 0 chrX 120080314 120080606 -42519324 + AluSp SINE Alu 1 295 -18 540 153 20 20 chrX 120080645 120080743 -42519187 + AluJo SINE Alu 7 104 -208 258 32 0 0 chrX 120080772 120080803 -42519127 + (T)n Simple_repeat Simple_repeat 1 31 0 1193 165 10 0 chrX 120080803 120081009 -42518921 + AluJo SINE Alu 102 309 -3 2338 74 3 3 chrX 120081435 120081745 -42518185 + AluSg SINE Alu 1 310 0 690 128 0 0 chrX 120082085 120082210 -42517720 + AluSg/x SINE Alu 188 312 0 2264 93 0 0 chrX 120082727 120083037 -42516893 - AluSx SINE Alu -2 310 1 628 176 343 20 chrX 120083414 120083659 -42516271 - MER5C DNA MER1_type 0 324 1 2337 82 3 0 chrX 120084246 120084551 -42515379 - AluSx SINE Alu -6 306 1 2007 108 3 35 chrX 120085065 120085380 -42514550 + AluSx SINE Alu 1 305 -7 218 104 0 21 chrX 120085760 120085808 -42514122 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 320 310 125 35 chrX 120085926 120086213 -42513717 + L2 LINE L2 594 906 -2408 564 266 98 33 chrX 120086300 120086544 -42513386 - MIR SINE MIR 0 262 3 2324 68 3 19 chrX 120086805 120087115 -42512815 - AluY SINE Alu -1 310 6 317 130 56 0 chrX 120087471 120087525 -42512405 - L1MC/D LINE L1 -886 5447 5391 4756 127 27 52 chrX 120087544 120087596 -42512334 - L1MB2 LINE L1 0 6171 6119 2302 93 6 0 chrX 120087596 120087907 -42512023 - AluSq SINE Alu 0 313 1 4756 127 27 52 chrX 120087907 120088474 -42511456 - L1MB2 LINE L1 -52 6119 5580 2193 114 0 0 chrX 120088474 120088773 -42511157 - AluSx SINE Alu -13 299 1 4756 127 27 52 chrX 120088773 120089053 -42510877 - L1MB2 LINE L1 -591 5580 5294 2256 91 10 0 chrX 120089064 120089360 -42510570 - AluSx SINE Alu -13 299 1 1022 192 25 46 chrX 120089360 120089641 -42510289 - L1MB2 LINE L1 -1489 4657 4383 220 400 94 0 chrX 120089772 120089932 -42509998 + L2 LINE L2 1212 1386 -1928 904 260 171 40 chrX 120090054 120090589 -42509341 - L2 LINE L2 -1 3312 2707 1182 111 21 21 chrX 120090592 120090781 -42509149 - AluJo SINE Alu -11 301 113 221 128 51 0 chrX 120090789 120090828 -42509102 + CT-rich Low_complexity Low_complexity 3 43 0 363 23 0 0 chrX 120090829 120090873 -42509057 + (TCCTG)n Simple_repeat Simple_repeat 2 45 0 706 133 9 0 chrX 120090878 120090983 -42508947 - AluJo SINE Alu -205 107 2 2448 246 64 16 chrX 120090985 120091008 -42508922 - L2 LINE L2 -602 2712 2692 2081 111 3 13 chrX 120091008 120091314 -42508616 + AluSx SINE Alu 1 303 -9 2448 246 64 16 chrX 120091314 120091973 -42507957 - L2 LINE L2 -622 2692 1997 1556 215 71 67 chrX 120091979 120092008 -42507922 - LTR33A LTR ERVL -8 515 488 1982 96 4 0 chrX 120092008 120092279 -42507651 + AluSp SINE Alu 36 307 -6 1556 215 71 67 chrX 120092279 120092743 -42507187 - LTR33A LTR ERVL -35 488 20 613 95 0 12 chrX 120092744 120092828 -42507102 + AluS SINE Alu 2 84 -228 1802 218 65 9 chrX 120092854 120093300 -42506630 - L2 LINE L2 -1295 2019 1549 2101 123 0 0 chrX 120093313 120093614 -42506316 - AluSx SINE Alu -11 301 1 515 335 34 39 chrX 120093638 120093844 -42506086 - L3 LINE CR1 -3 1574 1370 795 154 15 0 chrX 120093871 120094001 -42505929 - AluSg/x SINE Alu -18 292 161 2827 137 40 54 chrX 120094002 120094500 -42505430 + L1M2 LINE L1 4794 5298 -1014 2294 88 0 0 chrX 120094500 120094797 -42505133 - AluSq SINE Alu -16 297 1 2077 114 20 3 chrX 120094806 120095105 -42504825 - AluSx SINE Alu -8 304 1 2827 137 40 54 chrX 120095105 120095450 -42504480 + L1M2 LINE L1 5306 5649 -663 242 178 0 0 chrX 120095442 120095487 -42504443 + L1MC4 LINE L1 6658 6702 -1340 * 225 227 0 0 chrX 120095457 120095501 -42504429 - L1MC4 LINE L1 -1340 6702 6659 * 3060 106 51 4 chrX 120095501 120095993 -42503937 + L1MA6 LINE L1 5782 6296 -4 850 128 0 0 chrX 120096009 120096126 -42503804 + FLAM_C SINE Alu 2 118 -15 2126 252 76 84 chrX 120096263 120096561 -42503369 + L1M4 LINE L1 3961 4260 -1886 2013 104 17 0 chrX 120096561 120096848 -42503082 + AluSg SINE Alu 1 292 -18 2126 252 76 84 chrX 120096848 120097503 -42502427 + L1M4 LINE L1 4260 4919 -1227 2283 103 3 0 chrX 120097503 120097814 -42502116 - AluSq SINE Alu -1 312 1 2126 252 76 84 chrX 120097814 120098078 -42501852 + L1M4 LINE L1 4919 5170 -976 2091 77 0 80 chrX 120098078 120098405 -42501525 + AluSg1 SINE Alu 1 301 -8 2126 252 76 84 chrX 120098405 120098518 -42501412 + L1M4 LINE L1 5170 5282 -864 2169 109 3 0 chrX 120098526 120098830 -42501100 - AluSx SINE Alu -7 305 1 844 188 22 6 chrX 120099035 120099216 -42500714 - AluJb SINE Alu -6 306 123 222 95 0 48 chrX 120099228 120099250 -42500680 + (TA)n Simple_repeat Simple_repeat 1 22 -38 508 96 68 0 chrX 120099250 120099323 -42500607 + MADE1 DNA Mariner 1 78 -2 222 95 0 48 chrX 120099323 120099363 -42500567 + (TA)n Simple_repeat Simple_repeat 22 60 0 818 158 0 0 chrX 120099363 120099502 -42500428 - FLAM_C SINE Alu -4 139 1 955 239 154 50 chrX 120099930 120100327 -42499603 + L2 LINE L2 2831 3268 -45 2210 102 0 3 chrX 120100328 120100632 -42499298 + AluSx SINE Alu 1 303 -9 315 254 18 139 chrX 120100681 120100846 -42499084 - L2 LINE L2 0 3313 3169 352 305 0 0 chrX 120101188 120101283 -42498647 + L2 LINE L2 3191 3285 -28 282 190 0 17 chrX 120101291 120101349 -42498581 + MIR SINE MIR 14 70 -192 979 189 15 31 chrX 120101439 120101635 -42498295 + MIR SINE MIR 40 232 -30 185 200 86 0 chrX 120101612 120101647 -42498283 + L2 LINE L2 3214 3251 -21 * 2202 95 0 3 chrX 120101669 120101974 -42497956 + AluSx SINE Alu 3 306 -6 2110 103 0 0 chrX 120101976 120102300 -42497630 + AluSg SINE Alu 1 324 0 3769 77 60 14 chrX 120102568 120103130 -42496800 - L1MA3 LINE L1 -1 6304 5717 885 253 26 13 chrX 120103715 120103944 -42495986 + MIR SINE MIR 6 237 -25 2754 93 15 70 chrX 120104008 120104197 -42495733 + MER65A LTR ERV1 1 199 -246 2284 79 7 0 chrX 120104197 120104501 -42495429 + AluSp SINE Alu 1 306 -7 246 32 0 0 chrX 120104501 120104532 -42495398 + (CA)n Simple_repeat Simple_repeat 2 32 0 2754 93 15 70 chrX 120104532 120104663 -42495267 + MER65A LTR ERV1 198 290 -155 2424 66 3 0 chrX 120104663 120104964 -42494966 - AluSp SINE Alu -11 302 1 2754 93 15 70 chrX 120104964 120105112 -42494818 + MER65A LTR ERV1 290 445 0 428 129 0 0 chrX 120105326 120105388 -42494542 - AluSx SINE Alu -15 296 235 1162 22 0 0 chrX 120105388 120105523 -42494407 - L1PA5 LINE L1 0 6154 6020 1798 114 0 0 chrX 120105524 120105769 -42494161 - AluSx SINE Alu -67 245 1 2146 102 3 3 chrX 120106004 120106309 -42493621 + AluSq SINE Alu 1 305 -8 379 299 64 20 chrX 120107106 120107310 -42492620 + L2 LINE L2 1237 1449 -1865 1712 214 75 3 chrX 120107416 120107761 -42492169 + LTR16A LTR ERVL 81 450 0 184 325 87 40 chrX 120107781 120108058 -42491872 + L2 LINE L2 1521 1810 -1504 336 143 0 0 chrX 120108191 120108247 -42491683 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 249 33 0 0 chrX 120108247 120108277 -42491653 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1863 110 4 4 chrX 120108283 120108555 -42491375 - AluSq SINE Alu -41 272 1 670 204 6 87 chrX 120108586 120108758 -42491172 - FRAM SINE Alu -5 161 4 365 273 97 34 chrX 120108760 120108936 -42490994 + L2 LINE L2 2263 2449 -865 719 174 0 0 chrX 120108999 120109114 -42490816 + FLAM_A SINE Alu 10 124 -18 383 318 82 59 chrX 120109116 120109171 -42490759 + L2 LINE L2 2708 2760 -512 1816 122 11 0 chrX 120109171 120109477 -42490453 - AluSq SINE Alu 0 312 4 383 318 82 59 chrX 120109477 120109980 -42489950 + L2 LINE L2 2760 3272 0 2354 72 0 0 chrX 120110642 120110935 -42488995 + AluSg SINE Alu 1 293 -17 259 254 158 0 chrX 120110974 120111088 -42488842 - MIR SINE MIR -110 152 21 1963 128 0 3 chrX 120111587 120111883 -42488047 + AluSx SINE Alu 2 296 -16 345 133 0 0 chrX 120111890 120111965 -42487965 + (TA)n Simple_repeat Simple_repeat 2 76 0 675 240 33 7 chrX 120111977 120112127 -42487803 + MIR SINE MIR 32 185 -77 221 147 0 0 chrX 120112199 120112233 -42487697 + MIR SINE MIR 217 250 -12 925 163 19 0 chrX 120112330 120112490 -42487440 - FRAM SINE Alu -13 163 1 4596 138 14 32 chrX 120113126 120113484 -42486446 + L1PB3 LINE L1 4439 4802 -1352 2055 128 7 0 chrX 120113484 120113789 -42486141 + AluSx SINE Alu 3 309 -3 4596 138 14 32 chrX 120113789 120114479 -42485451 + L1PB3 LINE L1 4802 5469 -685 727 95 0 0 chrX 120114479 120114595 -42485335 - AluSp/q SINE Alu 0 304 189 1893 112 0 0 chrX 120114595 120114864 -42485066 + AluSq SINE Alu 43 311 -2 2308 118 6 0 chrX 120114865 120115203 -42484727 + L1PB3 LINE L1 5815 6154 0 757 206 0 0 chrX 120115257 120115383 -42484547 + FLAM_A SINE Alu 1 126 -7 2135 110 0 3 chrX 120115491 120115799 -42484131 + AluSx SINE Alu 1 307 -5 364 283 57 75 chrX 120115842 120116001 -42483929 - MIR3 SINE MIR -22 186 31 2137 117 0 0 chrX 120116490 120116789 -42483141 + AluSx SINE Alu 1 299 -13 2215 88 0 13 chrX 120116793 120117098 -42482832 + AluSx SINE Alu 3 303 -9 2129 85 3 31 chrX 120117113 120117432 -42482498 + AluSg SINE Alu 1 310 0 291 365 0 0 chrX 120117445 120117530 -42482400 - L2 LINE L2 -54 3259 3175 1168 159 42 53 chrX 120117679 120117943 -42481987 + MER63C DNA MER1_type 1 261 -669 1208 60 0 0 chrX 120117943 120118093 -42481837 - AluSp/q SINE Alu -7 306 157 261 122 0 0 chrX 120118118 120118159 -42481771 + L2 LINE L2 3273 3313 0 2085 108 0 3 chrX 120118202 120118489 -42481441 - AluSx SINE Alu -26 286 1 2948 198 73 6 chrX 120118489 120118587 -42481343 + MER63C DNA MER1_type 250 340 -720 2114 115 0 3 chrX 120118587 120118892 -42481038 - AluSx SINE Alu -8 304 1 2948 198 73 6 chrX 120118892 120119252 -42480678 + MER63C DNA MER1_type 340 764 -296 2390 69 3 3 chrX 120119252 120119558 -42480372 + AluSp SINE Alu 1 306 -7 2948 198 73 6 chrX 120119558 120119731 -42480199 + MER63C DNA MER1_type 764 924 -6 201 195 0 0 chrX 120121529 120121570 -42478360 + (TG)n Simple_repeat Simple_repeat 1 41 0 477 300 77 86 chrX 120121610 120122050 -42477880 + L2 LINE L2 2243 2678 -636 2443 84 3 0 chrX 120122273 120122572 -42477358 + AluSq SINE Alu 1 300 -13 2100 137 3 6 chrX 120123418 120123731 -42476199 - AluJo SINE Alu 0 312 1 2348 104 0 0 chrX 120123885 120124192 -42475738 - AluSc SINE Alu -2 307 1 331 215 15 85 chrX 120124206 120124228 -42475702 - L1MC4 LINE L1 0 8042 8020 1349 176 117 7 chrX 120124228 120124501 -42475429 + AluSg SINE Alu 1 303 -7 331 215 15 85 chrX 120124501 120124608 -42475322 - L1MC4 LINE L1 -22 8020 7922 195 100 0 0 chrX 120124613 120124643 -42475287 + (TC)n Simple_repeat Simple_repeat 1 30 0 320 169 96 36 chrX 120124679 120124762 -42475168 - L1MC4 LINE L1 -1340 6702 6615 474 198 21 0 chrX 120124773 120124869 -42475061 - L1MC4 LINE L1 -144 7898 7801 1830 74 0 51 chrX 120124971 120125227 -42474703 - AluSx SINE Alu -69 243 1 375 82 0 16 chrX 120125268 120125329 -42474601 - L1PB2 LINE L1 -7 6144 6085 1053 188 48 8 chrX 120125329 120125438 -42474492 - L1 LINE L1 -2938 3208 3105 2308 76 10 17 chrX 120125438 120125768 -42474162 - AluY SINE Alu 0 311 1 1053 188 48 8 chrX 120125768 120125908 -42474022 - L1 LINE L1 -3041 3105 2949 1997 152 0 3 chrX 120125917 120126213 -42473717 - AluJo SINE Alu -17 295 1 2190 127 0 0 chrX 120126456 120126748 -42473182 - AluSx SINE Alu -20 292 1 535 250 70 12 chrX 120126848 120127020 -42472910 + L2 LINE L2 3132 3313 0 292 326 36 56 chrX 120127041 120127237 -42472693 + L2 LINE L2 3118 3309 -4 2207 129 3 0 chrX 120128313 120128622 -42471308 + AluSx SINE Alu 1 310 -2 729 227 17 17 chrX 120128624 120128796 -42471134 - MIR SINE MIR -3 259 88 580 103 0 0 chrX 120128796 120128874 -42471056 - LTR8 LTR ERV1 0 691 614 * 722 120 0 72 chrX 120128873 120128998 -42470932 - LTR8 LTR ERV1 -575 116 1 280 233 70 0 chrX 120128998 120129071 -42470859 - MIR SINE MIR -116 92 3 198 0 0 0 chrX 120129226 120129248 -42470682 + (TG)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrX 120129247 120129269 -42470661 + (GA)n Simple_repeat Simple_repeat 1 22 0 2306 90 0 13 chrX 120129680 120129980 -42469950 - AluSg SINE Alu -14 296 1 202 325 25 0 chrX 120130072 120130152 -42469778 - L2 LINE L2 -3 3310 3229 1991 134 10 3 chrX 120130497 120130788 -42469142 + AluSx SINE Alu 3 295 -17 1018 166 12 0 chrX 120131261 120131424 -42468506 + FRAM SINE Alu 8 172 -4 1735 165 49 3 chrX 120131502 120131787 -42468143 - AluSx SINE Alu -14 298 1 523 215 136 91 chrX 120131915 120132157 -42467773 - MIR SINE MIR -8 254 2 2035 116 25 4 chrX 120132444 120132746 -42467184 + AluSx SINE Alu 1 308 0 2241 115 3 0 chrX 120133148 120133453 -42466477 - AluSx SINE Alu -6 306 1 759 268 39 15 chrX 120133798 120134003 -42465927 - MIR SINE MIR -6 256 47 2185 94 0 60 chrX 120134470 120134789 -42465141 - AluSx SINE Alu -12 300 1 1349 83 0 28 chrX 120135192 120135372 -42464558 + AluSg SINE Alu 1 175 -135 4882 136 115 99 chrX 120135372 120137138 -42462792 + pTR5 LTR ERV1 743 2428 -10 950 133 0 7 chrX 120137138 120137281 -42462649 + AluSg SINE Alu 162 303 -9 1300 98 0 0 chrX 120137694 120137858 -42462072 - AluSg/x SINE Alu -22 288 125 2073 145 0 0 chrX 120137872 120138168 -42461762 - AluSx SINE Alu -16 296 1 410 118 0 26 chrX 120138171 120138247 -42461683 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 478 206 84 0 chrX 120138247 120138354 -42461576 - L2 LINE L2 -5 3308 3193 277 260 84 26 chrX 120138366 120138520 -42461410 + L2 LINE L2 2917 3079 -193 3345 132 40 34 chrX 120138800 120139420 -42460510 + L1MA5 LINE L1 5440 6063 -237 2334 101 3 0 chrX 120139420 120139718 -42460212 + AluSx SINE Alu 1 299 -13 390 202 0 24 chrX 120139830 120139914 -42460016 - MIR3 SINE MIR -50 158 77 2148 110 0 42 chrX 120139951 120140261 -42459669 - AluSx SINE Alu -15 297 1 294 268 0 14 chrX 120140323 120140394 -42459536 + L2 LINE L2 3188 3257 -15 670 296 40 0 chrX 120141345 120141544 -42458386 - MIR SINE MIR -5 257 51 551 202 97 0 chrX 120141763 120141887 -42458043 + MIR SINE MIR 115 250 -12 186 298 0 18 chrX 120142235 120142292 -42457638 - MIR SINE MIR -1 261 206 2217 114 3 0 chrX 120142745 120143043 -42456887 - AluSx SINE Alu -13 299 1 432 0 0 0 chrX 120143045 120143093 -42456837 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2023 118 14 4 chrX 120143093 120143372 -42456558 - AluSx SINE Alu -30 282 1 278 383 0 0 chrX 120143391 120143472 -42456458 - L2 LINE L2 -6 3266 3186 690 309 207 3 chrX 120143534 120143897 -42456033 - L2 LINE L2 0 3272 2836 2289 76 0 0 chrX 120143965 120144241 -42455689 - AluY SINE Alu 0 311 36 2362 90 0 0 chrX 120144241 120144529 -42455401 - AluSx SINE Alu -23 289 1 576 263 22 0 chrX 120145077 120145214 -42454716 + MIR SINE MIR 93 232 -30 2240 121 0 0 chrX 120146203 120146500 -42453430 + AluSx SINE Alu 1 297 -15 768 177 0 0 chrX 120146540 120146670 -42453260 - MIR SINE MIR -33 229 100 460 229 122 0 chrX 120146921 120147052 -42452878 - MER69 DNA AcHobo -2379 147 1 371 313 8 23 chrX 120148035 120148166 -42451764 - MIR3 SINE MIR -1 207 79 297 0 0 0 chrX 120148191 120148224 -42451706 + (A)n Simple_repeat Simple_repeat 1 33 0 255 230 23 69 chrX 120149679 120149766 -42450164 - MIR SINE MIR -20 242 160 2040 99 0 0 chrX 120149776 120150029 -42449901 + AluSx SINE Alu 3 255 -57 306 43 0 0 chrX 120150109 120150155 -42449775 + AluSx SINE Alu 255 300 0 634 197 36 36 chrX 120150174 120150311 -42449619 - MIR SINE MIR -101 161 25 739 270 89 17 chrX 120150334 120150571 -42449359 - MIR SINE MIR -6 256 3 2033 130 11 0 chrX 120151077 120151354 -42448576 + AluSg SINE Alu 1 280 -30 2538 62 10 7 chrX 120151354 120151663 -42448267 + AluY SINE Alu 1 310 -1 28 0 0 0 chrX 120151681 120151709 -42448221 + AT_rich Low_complexity Low_complexity 1 28 0 2449 88 7 3 chrX 120151718 120152024 -42447906 + AluSc SINE Alu 1 307 -2 257 158 53 0 chrX 120152082 120152139 -42447791 - L1MB5 LINE L1 -3 6171 6112 22 70 0 0 chrX 120155419 120155462 -42444468 + GC_rich Low_complexity Low_complexity 1 43 0 275 184 235 41 chrX 120155679 120155777 -42444153 - MER96B DNA MER1_type? 0 417 301 243 143 179 0 chrX 120155785 120155841 -42444089 + MER58A DNA MER1_type 9 74 -33 592 176 124 7 chrX 120155900 120156053 -42443877 - MER96B DNA MER1_type? -238 179 9 800 216 156 27 chrX 120157531 120157832 -42442098 + L1MD3 LINE L1 7644 7983 -12 984 179 0 0 chrX 120157869 120158014 -42441916 - FRAM SINE Alu -31 145 1 315 49 0 0 chrX 120158028 120158069 -42441861 + (ATG)n Simple_repeat Simple_repeat 2 42 0 2300 101 0 3 chrX 120158304 120158601 -42441329 - AluSq SINE Alu -17 296 1 2447 96 0 0 chrX 120158868 120159180 -42440750 + AluSx SINE Alu 1 312 0 22 35 0 0 chrX 120159535 120159564 -42440366 + AT_rich Low_complexity Low_complexity 1 29 0 479 60 15 0 chrX 120159593 120159660 -42440270 + (TG)n Simple_repeat Simple_repeat 2 69 0 1520 286 154 19 chrX 120160043 120160672 -42439258 + L3 LINE CR1 864 1577 0 842 299 36 13 chrX 120160746 120160970 -42438960 + MIR SINE MIR 3 231 -31 1783 160 3 3 chrX 120161000 120161308 -42438622 + AluJb SINE Alu 1 308 0 2468 199 44 43 chrX 120161352 120161741 -42438189 - L1ME1 LINE L1 -4 6162 5770 2467 97 0 3 chrX 120161741 120162050 -42437880 - AluSq SINE Alu -5 308 1 2468 199 44 43 chrX 120162050 120162318 -42437612 - L1ME1 LINE L1 -396 5770 5504 885 145 0 7 chrX 120162321 120162459 -42437471 - AluJo SINE Alu -85 227 91 2234 121 0 0 chrX 120162501 120162791 -42437139 - AluSx SINE Alu -22 290 1 21 0 0 0 chrX 120162844 120162865 -42437065 + AT_rich Low_complexity Low_complexity 1 21 0 468 222 28 0 chrX 120162892 120163000 -42436930 + L1PB4 LINE L1 6038 6148 -8 1953 151 0 25 chrX 120163400 120163718 -42436212 - AluJo SINE Alu -2 310 1 2246 114 3 0 chrX 120164060 120164358 -42435572 - AluSx SINE Alu -13 299 1 2145 223 62 98 chrX 120164439 120164580 -42435350 + L2 LINE L2 2168 2312 -960 2353 198 61 55 chrX 120164580 120165013 -42434917 - MLT1E2 LTR MaLR 0 626 186 2406 106 0 0 chrX 120165013 120165316 -42434614 - AluSx SINE Alu -9 303 1 2353 198 61 55 chrX 120165316 120165503 -42434427 - MLT1E2 LTR MaLR -440 186 2 2145 223 62 98 chrX 120165503 120165709 -42434221 + L2 LINE L2 2312 2524 -748 2071 118 0 35 chrX 120165709 120166022 -42433908 + AluSx SINE Alu 1 302 -10 2145 223 62 98 chrX 120166022 120166543 -42433387 + L2 LINE L2 2524 3008 -264 2364 94 13 0 chrX 120166575 120167121 -42432809 - AluSx SINE Alu 0 550 1 303 114 25 38 chrX 120167121 120167144 -42432786 + CT-rich Low_complexity Low_complexity 2 180 0 732 81 10 0 chrX 120167144 120167243 -42432687 - HY3 scRNA scRNA -1 100 1 366 278 10 0 chrX 120167245 120167342 -42432588 + L2 LINE L2 2973 3070 -243 671 151 0 0 chrX 120167354 120167460 -42432470 + AluSg/x SINE Alu 197 302 -8 510 197 49 63 chrX 120167513 120167655 -42432275 + L2 LINE L2 3122 3261 -52 2246 109 3 7 chrX 120167817 120168119 -42431811 + AluSx SINE Alu 1 301 -11 2064 118 28 0 chrX 120168641 120168930 -42431000 + AluSx SINE Alu 1 297 -15 1813 153 49 0 chrX 120169980 120170267 -42429663 + AluJo SINE Alu 1 301 -11 186 71 0 0 chrX 120171280 120171308 -42428622 + (T)n Simple_repeat Simple_repeat 1 28 0 599 306 149 48 chrX 120172066 120172583 -42427347 + L2 LINE L2 255 823 -2491 21 0 0 0 chrX 120172615 120172636 -42427294 + AT_rich Low_complexity Low_complexity 1 21 0 2043 116 0 7 chrX 120172628 120172920 -42427010 - AluSx SINE Alu -22 290 1 301 319 11 11 chrX 120173177 120173268 -42426662 + MIR SINE MIR 20 110 -152 * 472 260 68 73 chrX 120173266 120173458 -42426472 + L2 LINE L2 3122 3312 -1 840 297 135 63 chrX 120173559 120174041 -42425889 + L2 LINE L2 2145 2591 -723 2035 147 0 0 chrX 120174041 120174353 -42425577 - AluJb SINE Alu 0 312 1 2231 111 0 0 chrX 120174362 120174669 -42425261 - AluSx SINE Alu -5 307 1 840 297 135 63 chrX 120174669 120174799 -42425131 + L2 LINE L2 2598 2812 -502 3941 222 124 39 chrX 120174893 120176193 -42423737 - L2 LINE L2 0 3313 2124 1838 153 0 7 chrX 120176193 120176493 -42423437 + AluJo SINE Alu 1 298 -14 3941 222 124 39 chrX 120176493 120176547 -42423383 - L2 LINE L2 -1189 2124 2076 2166 112 0 0 chrX 120176547 120176843 -42423087 + AluSx SINE Alu 1 296 -16 3941 222 124 39 chrX 120176843 120176893 -42423037 - L2 LINE L2 -1237 2076 1776 416 313 88 14 chrX 120176913 120177060 -42422870 + L2 LINE L2 3115 3272 0 344 145 14 29 chrX 120177344 120177413 -42422517 - MIR SINE MIR -69 139 72 2210 103 3 0 chrX 120177619 120177920 -42422010 - AluSx SINE Alu 0 312 11 328 386 23 6 chrX 120178041 120178217 -42421713 - MIR3 SINE MIR -27 181 3 574 250 91 78 chrX 120178655 120178735 -42421195 + MIR SINE MIR 28 105 -157 2146 113 0 10 chrX 120178735 120179046 -42420884 - AluSx SINE Alu -2 310 3 574 250 91 78 chrX 120179046 120179074 -42420856 + MIR SINE MIR 105 131 -131 2136 102 10 0 chrX 120179074 120179377 -42420553 - AluSq SINE Alu -7 306 1 574 250 91 78 chrX 120179377 120179499 -42420431 + MIR SINE MIR 131 262 0 1779 144 0 30 chrX 120179746 120180044 -42419886 + AluJb SINE Alu 1 289 -23 293 0 27 0 chrX 120180047 120180084 -42419846 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1171 63 0 0 chrX 120180210 120180352 -42419578 + AluSg/x SINE Alu 159 300 -12 2183 121 0 3 chrX 120180380 120180693 -42419237 + AluSx SINE Alu 1 312 0 419 315 74 13 chrX 120180767 120180916 -42419014 + L2 LINE L2 3115 3272 0 370 318 55 50 chrX 120181601 120181705 -42418225 + L2 LINE L2 2585 2692 -622 2111 87 3 3 chrX 120181705 120181993 -42417937 - AluSx SINE Alu -24 288 1 370 318 55 50 chrX 120181993 120182089 -42417841 + L2 LINE L2 2692 2786 -528 44037 28 22 1 chrX 120182307 120188332 -42411598 + L1HS LINE L1 3 6155 0 728 261 15 15 chrX 120188387 120188586 -42411344 + MER63A DNA MER1_type 4 202 -8 193 206 0 0 chrX 120188591 120188625 -42411305 + L2 LINE L2 2790 2823 -491 26 30 0 0 chrX 120188630 120188663 -42411267 + AT_rich Low_complexity Low_complexity 1 33 0 1837 115 3 51 chrX 120188666 120188962 -42410968 + AluSx SINE Alu 5 286 -26 1978 131 6 22 chrX 120188962 120189282 -42410648 - 7SLRNA srpRNA srpRNA -5 315 1 1540 284 103 20 chrX 120189382 120189966 -42409964 + L2 LINE L2 2222 2853 -461 189 347 132 19 chrX 120189966 120190179 -42409751 + L2 LINE L2 2524 2760 -554 1767 174 26 35 chrX 120190307 120190646 -42409284 + MLT2D LTR ERVL 1 336 -78 2056 87 42 7 chrX 120190686 120190972 -42408958 - AluSg1 SINE Alu -13 296 1 2119 107 13 0 chrX 120190995 120191294 -42408636 - AluSx SINE Alu -9 303 1 665 177 153 71 chrX 120191317 120191599 -42408331 - L1MC5 LINE L1 -48 7913 7609 1687 112 8 4 chrX 120191687 120191929 -42408001 - AluSq SINE Alu -70 243 1 2028 119 23 0 chrX 120192224 120192565 -42407365 - AluSx SINE Alu 0 348 1 453 330 28 33 chrX 120192567 120192782 -42407148 - MIR SINE MIR -48 214 1 832 207 11 17 chrX 120193026 120193205 -42406725 - MER5B DNA MER1_type 0 178 1 1032 234 15 41 chrX 120193274 120193542 -42406388 + MIR SINE MIR 6 262 0 456 300 40 20 chrX 120193755 120193905 -42406025 + MIR3 SINE MIR 49 201 -7 365 283 40 93 chrX 120194054 120194280 -42405650 + L2 LINE L2 3099 3312 -1 2141 84 35 0 chrX 120194451 120194736 -42405194 + AluSc SINE Alu 1 295 -14 965 198 52 91 chrX 120194742 120194789 -42405141 + L1MC4a LINE L1 5600 5647 -2161 2119 113 55 25 chrX 120194789 120195115 -42404815 - MER1B DNA MER1_type 0 337 2 965 198 52 91 chrX 120195115 120195336 -42404594 + L1MC4a LINE L1 5647 5855 -1953 2173 106 7 0 chrX 120195336 120195628 -42404302 - AluSq SINE Alu -19 294 1 965 198 52 91 chrX 120195628 120195687 -42404243 + L1MC4a LINE L1 5855 5915 -1893 202 164 0 73 chrX 120195928 120195983 -42403947 + A-rich Low_complexity Low_complexity 2 52 0 1957 121 17 0 chrX 120196970 120197260 -42402670 - AluSx SINE Alu -17 295 1 549 262 77 11 chrX 120197353 120197536 -42402394 - MIR SINE MIR -15 247 53 1895 179 52 3 chrX 120198782 120199129 -42400801 + MLT1A1 LTR MaLR 2 365 0 747 234 106 38 chrX 120199318 120199553 -42400377 + MIR SINE MIR 12 262 0 2350 69 3 0 chrX 120199565 120199868 -42400062 - AluY SINE Alu -7 304 1 1393 49 0 0 chrX 120199895 120200059 -42399871 - U1 snRNA snRNA -1 164 1 2168 107 3 0 chrX 120200244 120200553 -42399377 - AluSx SINE Alu -2 310 1 861 191 19 107 chrX 120200555 120200817 -42399113 - MER8 DNA MER2_type 0 239 1 2240 75 3 3 chrX 120201586 120201879 -42398051 + AluSx SINE Alu 1 293 -19 180 303 40 26 chrX 120202198 120202274 -42397656 - L2 LINE L2 -277 2995 2919 481 205 213 0 chrX 120202371 120202498 -42397432 + Charlie8 DNA MER1_type 36 189 -2228 2110 127 0 16 chrX 120202660 120202976 -42396954 - AluSx SINE Alu -1 311 1 1878 142 0 31 chrX 120203193 120203511 -42396419 + AluJo SINE Alu 1 308 -4 1105 200 32 14 chrX 120203587 120203807 -42396123 + MIR SINE MIR 22 245 -17 514 306 133 39 chrX 120203835 120204270 -42395660 - L2 LINE L2 -674 2640 2165 2150 114 0 25 chrX 120206349 120206665 -42393265 - AluSx SINE Alu -4 308 1 329 187 13 13 chrX 120206979 120207054 -42392876 - MER116 DNA Mariner -5 75 1 330 293 73 59 chrX 120207166 120207282 -42392648 + L1ME4a LINE L1 4631 4744 -1402 2277 86 0 3 chrX 120207282 120207584 -42392346 + AluSg SINE Alu 1 301 -9 330 293 73 59 chrX 120207584 120207762 -42392168 + L1ME4a LINE L1 4744 4979 -1167 1784 140 7 26 chrX 120207770 120208078 -42391852 - AluJb SINE Alu -7 305 4 2197 108 0 0 chrX 120208091 120208388 -42391542 - AluSx SINE Alu -15 297 1 1787 129 10 58 chrX 120208429 120208578 -42391352 + AluJb SINE Alu 1 129 -183 2247 84 0 16 chrX 120208578 120208886 -42391044 + AluSc SINE Alu 1 303 -6 1787 129 10 58 chrX 120208886 120209046 -42390884 + AluJb SINE Alu 129 295 -17 422 102 0 2 chrX 120209223 120209410 -42390520 + AluSq SINE Alu 85 304 -8 1160 252 114 59 chrX 120209426 120210076 -42389854 + L1ME4a LINE L1 5180 5894 -227 2310 80 0 3 chrX 120210076 120210377 -42389553 - AluSx SINE Alu -12 300 1 1160 252 114 59 chrX 120210377 120210602 -42389328 + L1ME4a LINE L1 5894 6105 -16 298 102 85 0 chrX 120210599 120210658 -42389272 - L1MB3 LINE L1 0 6183 6120 * 1662 148 4 4 chrX 120210668 120210931 -42388999 - AluJo SINE Alu -16 296 34 21 57 0 0 chrX 120210931 120210966 -42388964 + AT_rich Low_complexity Low_complexity 1 35 0 2046 120 3 7 chrX 120211125 120211424 -42388506 + AluSx SINE Alu 1 298 -14 1090 62 0 20 chrX 120211906 120212052 -42387878 - L1PA10 LINE L1 -1 6167 6025 2401 70 3 0 chrX 120212282 120212582 -42387348 - AluSp SINE Alu -12 301 1 2093 122 0 3 chrX 120212883 120213195 -42386735 - AluSx SINE Alu -1 311 1 535 185 163 0 chrX 120213741 120213876 -42386054 + L1ME2 LINE L1 6008 6164 0 2137 109 0 0 chrX 120213885 120214179 -42385751 + AluSq SINE Alu 1 294 -19 409 286 64 49 chrX 120214208 120214295 -42385635 + L1MC4 LINE L1 7826 7910 -132 1815 113 6 85 chrX 120214295 120214651 -42385279 + AluSx SINE Alu 1 312 0 409 286 64 49 chrX 120214651 120214766 -42385164 + L1MC4 LINE L1 7910 8031 -11 470 298 128 63 chrX 120215194 120216122 -42383808 - L2 LINE L2 0 3272 2291 390 285 265 15 chrX 120216156 120216356 -42383574 + MIR SINE MIR 13 262 0 392 258 66 93 chrX 120216373 120216707 -42383223 - L2 LINE L2 -1078 2236 1912 1879 111 0 0 chrX 120217756 120218018 -42381912 - AluSx SINE Alu -17 295 34 1571 153 0 39 chrX 120218043 120218324 -42381606 - AluJb SINE Alu -42 270 1 4752 143 81 53 chrX 120218635 120218856 -42381074 + MER21A LTR ERV1 1 214 -717 1675 81 36 0 chrX 120218856 120219078 -42380852 - MER30 DNA MER1_type 0 230 1 4752 143 81 53 chrX 120219078 120219500 -42380430 + MER21A LTR ERV1 214 679 -252 2058 113 3 10 chrX 120219500 120219802 -42380128 + AluSx SINE Alu 1 300 -12 4752 143 81 53 chrX 120219802 120220063 -42379867 + MER21A LTR ERV1 679 931 0 2296 84 3 0 chrX 120220213 120220509 -42379421 + AluSg SINE Alu 1 297 -13 220 309 15 0 chrX 120220644 120220712 -42379218 - L2 LINE L2 -5 3308 3240 342 223 67 21 chrX 120221484 120221584 -42378346 + MIR SINE MIR 17 119 -99 249 329 0 0 chrX 120221924 120222000 -42377930 + L2 LINE L2 2593 2668 -646 218 252 210 42 chrX 120222552 120222671 -42377259 + MIR3 SINE MIR 3 141 -67 218 339 0 28 chrX 120224722 120224831 -42375099 + C-rich Low_complexity Low_complexity 3 108 0 193 208 146 52 chrX 120224911 120225007 -42374923 - MIR SINE MIR -26 236 132 554 203 51 38 chrX 120225023 120225181 -42374749 + MIR SINE MIR 28 187 -75 292 230 81 11 chrX 120225239 120225326 -42374604 - MIR SINE MIR -123 139 47 2250 111 3 7 chrX 120226102 120226399 -42373531 - AluSx SINE Alu -16 296 1 2514 43 7 3 chrX 120226426 120226725 -42373205 + AluY SINE Alu 1 300 -11 228 184 0 0 chrX 120227593 120227642 -42372288 + CT-rich Low_complexity Low_complexity 3 51 0 1894 130 21 18 chrX 120227810 120227957 -42371973 - AluSx SINE Alu -26 286 136 2446 79 0 3 chrX 120227957 120228260 -42371670 - AluY SINE Alu -9 302 1 1894 130 21 18 chrX 120228260 120228397 -42371533 - AluSx SINE Alu -176 136 1 197 32 0 32 chrX 120228437 120228468 -42371462 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2171 97 29 23 chrX 120228606 120228914 -42371016 - AluSx SINE Alu -2 310 1 1687 226 77 11 chrX 120228934 120229311 -42370619 - MER20B DNA MER1_type -381 402 1 708 292 76 48 chrX 120229313 120229406 -42370524 + L2 LINE L2 2942 3031 -282 2479 48 10 0 chrX 120229406 120229697 -42370233 + AluY SINE Alu 1 294 -17 708 292 76 48 chrX 120229697 120229959 -42369971 + L2 LINE L2 3031 3307 -6 353 21 0 21 chrX 120229959 120230006 -42369924 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 1483 125 9 30 chrX 120230426 120230658 -42369272 + THE1B LTR MaLR 138 364 0 195 69 0 0 chrX 120230729 120230758 -42369172 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1901 147 0 18 chrX 120230761 120231047 -42368883 - AluJo SINE Alu -30 282 2 2388 87 7 0 chrX 120231057 120231357 -42368573 - AluSp SINE Alu -11 302 1 1970 218 65 16 chrX 120231478 120231856 -42368074 - L1ME1 LINE L1 -15 6151 5742 922 207 125 61 chrX 120231856 120231900 -42368030 - MLT1A1 LTR MaLR 0 365 325 2330 75 0 7 chrX 120231900 120232210 -42367720 - AluSg SINE Alu 0 308 1 922 207 125 61 chrX 120232210 120232507 -42367423 - MLT1A1 LTR MaLR -40 325 1 1970 218 65 16 chrX 120232507 120232624 -42367306 - L1ME1 LINE L1 -424 5742 5632 1129 212 14 23 chrX 120232600 120232894 -42367036 - L1MC4a LINE L1 -339 5822 5652 * 1604 188 44 3 chrX 120232922 120233215 -42366715 + AluJo SINE Alu 1 305 -7 488 274 93 80 chrX 120233479 120233943 -42365987 - L2 LINE L2 -2572 742 273 3251 122 110 18 chrX 120234118 120234690 -42365240 - MER51A LTR ERV1 -9 625 1 787 208 34 6 chrX 120235075 120235253 -42364677 + L2 LINE L2 2062 2244 -1070 1416 202 40 0 chrX 120235255 120235507 -42364423 + Tigger7 DNA MER2_type 3 264 -2223 541 216 0 20 chrX 120235507 120235609 -42364321 + Tigger7 DNA MER2_type 2488 2587 0 211 211 0 0 chrX 120235609 120235647 -42364283 + L2 LINE L2 2243 2280 -1034 7895 120 81 113 chrX 120235649 120237394 -42362536 + pTR5 LTR ERV1 741 2428 -10 396 329 7 7 chrX 120237394 120237546 -42362384 + L2 LINE L2 2269 2420 -894 2022 125 24 0 chrX 120237546 120237835 -42362095 - AluSg SINE Alu -14 296 1 1385 233 45 62 chrX 120237838 120238337 -42361593 + L2 LINE L2 2692 3172 -141 2297 101 7 3 chrX 120238337 120238635 -42361295 - AluSx SINE Alu -13 299 1 1385 233 45 62 chrX 120238635 120238775 -42361155 + L2 LINE L2 3172 3313 0 2367 94 0 0 chrX 120239177 120239474 -42360456 - AluSq SINE Alu -16 297 1 206 325 0 0 chrX 120239494 120239574 -42360356 - L2 LINE L2 -840 2474 2395 775 249 93 46 chrX 120239760 120240124 -42359806 + MLT1J2 LTR MaLR 68 402 -7 2284 132 64 45 chrX 120240124 120240161 -42359769 - MSTB1 LTR MaLR 0 432 397 2228 126 0 3 chrX 120240161 120240471 -42359459 + AluSx SINE Alu 1 309 -3 1473 165 0 4 chrX 120240480 120240710 -42359220 + AluSg/x SINE Alu 80 308 -2 2284 132 64 45 chrX 120240710 120241086 -42358844 - MSTB1 LTR MaLR -42 390 1 2412 74 0 7 chrX 120241480 120241779 -42358151 - AluY SINE Alu -13 298 2 979 316 19 22 chrX 120241972 120242333 -42357597 - LTR16B LTR ERVL 0 464 105 372 293 8 0 chrX 120242511 120242634 -42357296 - HERV16 LTR ERVL -63 4933 4810 719 227 61 21 chrX 120242634 120242888 -42357042 - L1MEc LINE L1 -3535 2891 2630 22 35 0 0 chrX 120242981 120243010 -42356920 + AT_rich Low_complexity Low_complexity 1 29 0 1762 169 14 3 chrX 120243126 120243422 -42356508 + AluJb SINE Alu 1 299 -13 308 290 73 9 chrX 120244152 120244246 -42355684 - L1MEc LINE L1 -3753 2673 2577 221 75 25 0 chrX 120244246 120244286 -42355644 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 308 290 73 9 chrX 120244286 120244314 -42355616 - L1MEc LINE L1 -3849 2577 2552 1017 108 0 0 chrX 120244314 120244443 -42355487 - AluJo SINE Alu -178 134 6 797 205 5 35 chrX 120244443 120244643 -42355287 - L1MEc LINE L1 -4007 2600 2407 * 870 191 59 59 chrX 120244638 120244801 -42355129 - L1MA4 LINE L1 0 6300 6138 195 42 0 0 chrX 120244801 120244825 -42355105 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2437 77 0 0 chrX 120244825 120245110 -42354820 - AluSx SINE Alu -27 285 1 870 191 59 59 chrX 120245110 120245217 -42354713 - L1MA4 LINE L1 -160 6140 6029 807 233 66 28 chrX 120245212 120245389 -42354541 - L1MEc LINE L1 -4033 2393 2199 * 1948 154 0 3 chrX 120245389 120245681 -42354249 - AluJb SINE Alu -21 291 1 807 233 66 28 chrX 120245681 120245790 -42354140 - L1MEc LINE L1 -4227 2199 2096 1496 327 53 3 chrX 120245801 120246406 -42353524 - HERV16 LTR ERVL -777 4987 4353 * 2301 210 26 4 chrX 120246402 120246855 -42353075 - HERV16 LTR ERVL -3598 1398 936 6279 240 73 9 chrX 120246905 120248672 -42351258 - HERV16 LTR ERVL -3047 1949 2 871 269 9 0 chrX 120248673 120248889 -42351041 - LTR16B LTR ERVL 0 464 247 1011 259 103 39 chrX 120248891 120249491 -42350439 + L2 LINE L2 2104 2664 -649 2198 138 0 0 chrX 120249491 120249803 -42350127 - AluSq SINE Alu -1 312 1 1011 259 103 39 chrX 120249803 120249979 -42349951 + L2 LINE L2 2664 3313 0 1436 208 35 14 chrX 120250127 120250415 -42349515 - MLT1C LTR MaLR 0 467 174 2458 82 0 0 chrX 120250429 120250721 -42349209 + AluSx SINE Alu 1 292 -20 1097 106 0 19 chrX 120250721 120250874 -42349056 - L1PA10 LINE L1 -14 6154 6003 1286 77 11 6 chrX 120250874 120251055 -42348875 + MER51A LTR ERV1 453 634 0 6625 89 2 7 chrX 120251055 120252419 -42347511 + L1PA13 LINE L1 4806 6162 -1 2167 116 7 0 chrX 120252625 120252918 -42347012 + AluSx SINE Alu 1 295 -17 810 308 66 29 chrX 120252979 120253496 -42346434 + L1ME3A LINE L1 3351 3886 -2260 532 267 129 0 chrX 120253500 120253702 -42346228 + L1ME3A LINE L1 4103 4330 -1816 1153 242 165 42 chrX 120253714 120254212 -42345718 + L1ME3A LINE L1 4385 4820 -1326 2336 105 0 0 chrX 120254212 120254518 -42345412 - AluY SINE Alu -5 306 1 1153 242 165 42 chrX 120254518 120254587 -42345343 + L1ME3A LINE L1 4820 4879 -1267 2283 98 3 0 chrX 120254587 120254882 -42345048 - AluSq SINE Alu -17 296 1 1153 242 165 42 chrX 120254882 120255069 -42344861 + L1ME3A LINE L1 4879 5233 -913 1105 256 68 16 chrX 120255069 120255451 -42344479 + L2 LINE L2 2912 3313 0 857 294 42 45 chrX 120255477 120255792 -42344138 + L1ME3A LINE L1 5257 5571 -599 2374 82 0 16 chrX 120255792 120256097 -42343833 - AluSc SINE Alu -9 300 1 857 294 42 45 chrX 120256097 120256212 -42343718 + L1ME3A LINE L1 5571 5685 -485 2422 90 3 3 chrX 120256212 120256522 -42343408 - AluSx SINE Alu -2 310 1 857 294 42 45 chrX 120256522 120256850 -42343080 + L1ME3A LINE L1 5685 5946 -224 2057 150 0 7 chrX 120256914 120257221 -42342709 - AluSx SINE Alu -7 305 1 2204 98 0 17 chrX 120257354 120257672 -42342258 + AluSx SINE Alu 1 313 0 285 29 0 0 chrX 120257702 120257736 -42342194 + (TG)n Simple_repeat Simple_repeat 1 34 0 1319 175 38 110 chrX 120257882 120258023 -42341907 - MER58B DNA MER1_type -2079 341 192 3504 186 19 8 chrX 120258023 120258640 -42341290 + MLT1E3 LTR MaLR 1 624 0 1319 175 38 110 chrX 120258640 120258789 -42341141 - MER58B DNA MER1_type -2228 192 80 369 109 0 0 chrX 120258789 120258844 -42341086 + (TG)n Simple_repeat Simple_repeat 2 56 0 1319 175 38 110 chrX 120258844 120258917 -42341013 - MER58B DNA MER1_type -2340 80 3 1719 186 65 13 chrX 120259566 120259948 -42339982 - MLT1C LTR MaLR 0 467 66 3259 108 165 0 chrX 120259954 120260498 -42339432 + MER51A LTR ERV1 1 634 0 310 206 0 0 chrX 120260498 120260561 -42339369 + L1P LINE L1 4806 4868 -1278 531 63 0 0 chrX 120260561 120260624 -42339306 + MER51A LTR ERV1 572 634 0 340 155 52 0 chrX 120260625 120260683 -42339247 - MLT1C LTR MaLR -405 62 2 6912 61 5 39 chrX 120260762 120262439 -42337491 - SVA Other Other -723 1386 1 198 0 0 0 chrX 120262440 120262462 -42337468 + (GGGAGA)n Simple_repeat Simple_repeat 5 26 0 235 284 0 25 chrX 120262497 120262578 -42337352 - MIR SINE MIR -131 131 53 488 199 51 6 chrX 120262773 120262905 -42337025 - MIR SINE MIR -12 250 113 687 229 21 0 chrX 120262985 120263129 -42336801 - L1PB4 LINE L1 -9 6147 6001 203 185 138 31 chrX 120264604 120264669 -42335261 + L2 LINE L2 3200 3271 -1 1882 117 26 11 chrX 120264756 120265049 -42334881 - AluSx SINE Alu 0 312 19 649 260 38 90 chrX 120265156 120265522 -42334408 - L1ME4a LINE L1 -85 6036 5690 26 30 0 0 chrX 120265730 120265763 -42334167 + AT_rich Low_complexity Low_complexity 1 33 0 2233 105 0 16 chrX 120265769 120266075 -42333855 - AluSx SINE Alu -11 301 1 27 49 0 0 chrX 120266101 120266142 -42333788 + AT_rich Low_complexity Low_complexity 1 41 0 829 277 106 42 chrX 120266309 120266865 -42333065 - L1MC4a LINE L1 -1914 5894 5295 2347 101 0 3 chrX 120266865 120267171 -42332759 - AluSq SINE Alu -8 305 1 829 277 106 42 chrX 120267171 120267216 -42332714 - L1MC4a LINE L1 -2513 5295 5254 635 165 28 0 chrX 120267388 120267533 -42332397 + FLAM_C SINE Alu 5 152 0 234 252 37 28 chrX 120267559 120267666 -42332264 - L1P LINE L1 -1115 5031 4924 263 310 26 26 chrX 120268012 120268125 -42331805 - MLT1K LTR MaLR -339 249 137 237 243 27 14 chrX 120268335 120268409 -42331521 - MER77 LTR ERV1 -40 565 491 622 286 129 29 chrX 120269957 120270484 -42329446 + L1ME4a LINE L1 5337 5916 -205 297 283 36 22 chrX 120270511 120270649 -42329281 - L1MB7 LINE L1 0 6184 6045 2623 99 2 37 chrX 120270650 120270677 -42329253 - L1PB3 LINE L1 0 6154 6128 2655 130 16 26 chrX 120270677 120271107 -42328823 + MSTB LTR MaLR 1 426 0 2623 99 2 37 chrX 120271107 120271481 -42328449 - L1PB3 LINE L1 -26 6128 5767 5993 89 8 39 chrX 120271143 120271492 -42328438 - L1PB3 LINE L1 -57 6097 5739 3422 77 21 2 chrX 120271492 120271922 -42328008 - L1PA13 LINE L1 -16 6147 5710 5993 89 8 39 chrX 120271922 120272504 -42327426 - L1PB3 LINE L1 -415 5739 5196 1960 225 90 15 chrX 120272522 120273112 -42326818 + L2 LINE L2 1866 2499 -815 5038 198 94 23 chrX 120273114 120273763 -42326167 + MER69 DNA AcHobo 7 608 -1918 3786 130 22 20 chrX 120273763 120273987 -42325943 - L1MB1 LINE L1 0 6168 5946 1795 166 21 0 chrX 120273987 120274276 -42325654 - AluJo SINE Alu -17 295 1 3786 130 22 20 chrX 120274276 120274650 -42325280 - L1MB1 LINE L1 -222 5946 5569 5038 198 94 23 chrX 120274650 120275553 -42324377 + MER69 DNA AcHobo 608 2523 -3 1884 252 71 12 chrX 120275554 120276347 -42323583 + L2 LINE L2 2487 3312 -1 204 40 0 0 chrX 120276393 120276418 -42323512 + (TTCTCC)n Simple_repeat Simple_repeat 5 29 0 2032 101 40 0 chrX 120276418 120276696 -42323234 - AluSq SINE Alu -24 289 1 897 171 0 12 chrX 120276726 120276890 -42323040 - L1MB3 LINE L1 0 6183 6022 195 298 21 0 chrX 120277326 120277373 -42322557 - L2 LINE L2 -18 3254 3207 614 319 5 5 chrX 120277377 120277593 -42322337 + L2 LINE L2 1804 2019 -1295 746 327 78 13 chrX 120277644 120278039 -42321891 + L2 LINE L2 2552 2972 -342 1714 277 14 36 chrX 120278048 120278908 -42321022 - L2 LINE L2 0 3313 2481 3960 203 54 35 chrX 120279034 120279278 -42320652 - MER69 DNA AcHobo -1642 884 646 1725 116 0 24 chrX 120279278 120279528 -42320402 - AluJb SINE Alu -23 289 46 3960 203 54 35 chrX 120279528 120280150 -42319780 - MER69 DNA AcHobo -1880 646 1 754 172 19 93 chrX 120280151 120280366 -42319564 - L2 LINE L2 -820 2494 2296 205 245 20 0 chrX 120280385 120280434 -42319496 + L2 LINE L2 2987 3036 -236 2328 84 3 0 chrX 120280528 120280824 -42319106 - AluSp SINE Alu -16 297 1 2658 133 37 33 chrX 120280847 120281277 -42318653 + MSTB1 LTR MaLR 1 432 0 220 287 101 78 chrX 120281279 120281408 -42318522 + L2 LINE L2 3139 3270 -2 217 242 136 0 chrX 120281397 120281463 -42318467 - MIR SINE MIR -131 131 57 * 1356 186 79 25 chrX 120281506 120281823 -42318107 - L1ME3A LINE L1 -26 6144 5811 1150 120 95 16 chrX 120281843 120281962 -42317968 - Charlie1a DNA MER1_type -1306 1455 1347 2179 81 0 0 chrX 120281962 120282222 -42317708 + AluSq SINE Alu 1 260 -53 1150 120 95 16 chrX 120282222 120282344 -42317586 - Charlie1a DNA MER1_type -1414 1347 1195 259 311 62 106 chrX 120282762 120282845 -42317085 + L2 LINE L2 2823 2908 -364 216 0 0 0 chrX 120282845 120282869 -42317061 + (CA)n Simple_repeat Simple_repeat 1 24 0 259 311 62 106 chrX 120282869 120283255 -42316675 + L2 LINE L2 2908 3271 -1 354 98 0 0 chrX 120283332 120283383 -42316547 + (TA)n Simple_repeat Simple_repeat 2 52 0 338 320 30 10 chrX 120284206 120284306 -42315624 + MIR SINE MIR 29 130 -78 2304 244 102 6 chrX 120284308 120284955 -42314975 + L1MEc LINE L1 18 726 -5670 * 2905 190 56 46 chrX 120284942 120285344 -42314586 + L1ME1 LINE L1 5479 5892 -274 2307 85 0 3 chrX 120285344 120285637 -42314293 - AluY SINE Alu -19 292 1 2905 190 56 46 chrX 120285637 120285908 -42314022 + L1ME1 LINE L1 5892 6159 -7 1282 165 64 23 chrX 120285910 120286176 -42313754 - Charlie1a DNA MER1_type -553 902 626 815 177 15 0 chrX 120286191 120286321 -42313609 - AluJo SINE Alu -178 134 3 2780 177 108 17 chrX 120286322 120286897 -42313033 - Charlie1a DNA MER1_type -822 633 7 1030 276 25 4 chrX 120286901 120287180 -42312750 - L1ME3A LINE L1 -359 5811 5527 314 279 118 82 chrX 120287338 120287472 -42312458 + L1MC4a LINE L1 5670 5798 -2010 1790 179 6 19 chrX 120287472 120287784 -42312146 + AluJo SINE Alu 1 308 -4 314 279 118 82 chrX 120287784 120287929 -42312001 + L1MC4a LINE L1 5798 5959 -1849 2085 141 147 5 chrX 120288143 120288518 -42311412 - MSTC LTR MaLR 0 428 1 403 297 7 7 chrX 120288644 120288782 -42311148 + L1MC4a LINE L1 4908 5045 -1101 809 169 8 0 chrX 120288782 120288906 -42311024 + FLAM_C SINE Alu 1 125 -8 1529 84 4 22 chrX 120288938 120289163 -42310767 - pTR5 LTR ERV1 -2046 392 172 391 214 10 0 chrX 120289166 120289264 -42310666 - LTR30 LTR ERV1 -80 642 544 5195 148 33 31 chrX 120289264 120290385 -42309545 - pTR5 LTR ERV1 -413 2025 745 303 212 28 15 chrX 120290387 120290462 -42309468 + FLAM_A SINE Alu 11 78 -55 6529 130 135 116 chrX 120290463 120292111 -42307819 - pTR5 LTR ERV1 -19 2419 741 662 136 68 0 chrX 120292111 120292214 -42307716 + AluSc SINE Alu 198 307 -2 288 226 86 69 chrX 120292235 120292423 -42307507 + L1MC4a LINE L1 5070 5260 -886 568 237 102 16 chrX 120292466 120292652 -42307278 + L1MC4a LINE L1 5302 5503 -2305 * 3891 201 39 7 chrX 120292650 120293463 -42306467 + L1MC4a LINE L1 6970 7808 0 360 0 0 0 chrX 120293693 120293733 -42306197 + (TG)n Simple_repeat Simple_repeat 2 41 0 273 29 0 0 chrX 120293744 120293778 -42306152 + (CA)n Simple_repeat Simple_repeat 2 35 0 3923 92 120 2 chrX 120293794 120294361 -42305569 + MER51A LTR ERV1 1 634 0 303 294 126 24 chrX 120294361 120294616 -42305314 - L1MC4a LINE L1 -1891 5917 5637 754 250 23 0 chrX 120294903 120295075 -42304855 - MIR SINE MIR -5 257 82 503 266 154 19 chrX 120296016 120296230 -42303700 - MIR SINE MIR 0 262 20 222 321 0 0 chrX 120296266 120296322 -42303608 - MIR SINE MIR -185 77 22 617 313 60 0 chrX 120297406 120297572 -42302358 + MER91A DNA MER1_type 21 196 0 198 328 69 0 chrX 120297573 120297631 -42302299 + L2 LINE L2 3247 3308 -5 1554 92 0 15 chrX 120298720 120298926 -42301004 + AluSp SINE Alu 104 306 -7 620 235 158 55 chrX 120298954 120299226 -42300704 + L2 LINE L2 3014 3313 0 624 244 69 61 chrX 120300055 120300317 -42299613 - HAL1 LINE L1 -689 1818 1555 2754 98 63 21 chrX 120300329 120300759 -42299171 + LTR7 LTR ERV1 1 448 -2 20826 88 26 6 chrX 120300761 120303691 -42296239 + HERVH LTR ERV1 1 2987 -4726 920 135 20 0 chrX 120303685 120303833 -42296097 + HERVH LTR ERV1 3140 3290 -4423 * 3448 106 6 2 chrX 120303823 120304323 -42295607 + HERVH LTR ERV1 3492 3993 -3720 * 4344 155 3 1 chrX 120304319 120304990 -42294940 + HERVH LTR ERV1 4478 5149 -2564 2654 96 44 34 chrX 120304991 120305586 -42294344 + HERVH LTR ERV1 5600 7713 0 2744 86 57 39 chrX 120305586 120306026 -42293904 + LTR7 LTR ERV1 1 448 -2 539 303 62 19 chrX 120306080 120306387 -42293543 - HAL1 LINE L1 -1018 1489 1170 1906 112 157 82 chrX 120306490 120306866 -42293064 - MER4A LTR ERV1 0 664 261 703 82 10 10 chrX 120306866 120306964 -42292966 - MER4A LTR ERV1 -566 98 1 7148 94 36 39 chrX 120306972 120307169 -42292761 - MER4A-int LTR ERV1 -2 6596 6400 1935 119 6 53 chrX 120307169 120307488 -42292442 + AluSx SINE Alu 1 304 -8 7148 94 36 39 chrX 120307488 120307799 -42292131 - MER4A-int LTR ERV1 -198 6400 6090 2599 65 0 0 chrX 120307799 120308106 -42291824 + AluY SINE Alu 1 307 -4 7148 94 36 39 chrX 120308106 120308403 -42291527 - MER4A-int LTR ERV1 -508 6090 5791 1878 148 13 16 chrX 120308403 120308708 -42291222 + AluSx SINE Alu 1 304 -8 7148 94 36 39 chrX 120308708 120309002 -42290928 - MER4A-int LTR ERV1 -807 5791 5498 8932 92 52 16 chrX 120309004 120310380 -42289550 - MER4A-int LTR ERV1 -1336 5262 3837 1558 177 40 27 chrX 120310379 120310752 -42289178 - MER4A-int LTR ERV1 -2917 3681 3304 * 1233 146 0 44 chrX 120310754 120310959 -42288971 - AluSg/x SINE Alu 0 312 117 1009 78 20 20 chrX 120310961 120311114 -42288816 - MER4A-int LTR ERV1 -3709 2889 2737 1294 171 75 4 chrX 120311114 120311353 -42288577 + LTR8 LTR ERV1 1 256 -435 4689 72 56 11 chrX 120311354 120312073 -42287857 - MER4A-int LTR ERV1 -4103 2495 1745 531 0 0 0 chrX 120312074 120312133 -42287797 + (CA)n Simple_repeat Simple_repeat 2 60 0 872 101 47 0 chrX 120312133 120312262 -42287668 - MER4A-int LTR ERV1 -5609 1149 1015 778 129 0 26 chrX 120312259 120312375 -42287555 + MER4B-int LTR ERV1 432 544 -6214 * 1825 91 0 8 chrX 120312373 120312615 -42287315 - MER4A-int LTR ERV1 -6325 433 194 1519 243 65 8 chrX 120312617 120312984 -42286946 - MER4A-int LTR ERV1 -4099 2232 1845 2655 135 31 73 chrX 120313024 120313632 -42286298 - MER4A-int LTR ERV1 -5764 834 2 1878 126 169 39 chrX 120313638 120313994 -42285936 - MER4A LTR ERV1 -2 662 261 721 91 0 10 chrX 120313994 120314093 -42285837 - MER4A LTR ERV1 -566 98 1 2047 148 84 60 chrX 120314131 120314246 -42285684 + L1MC5 LINE L1 7057 7168 -793 6110 60 60 4 chrX 120314246 120314985 -42284945 + LTR17 LTR ERV1 1 780 0 2047 148 84 60 chrX 120314985 120315381 -42284549 + L1MC5 LINE L1 7168 7580 -381 333 193 24 12 chrX 120315402 120315485 -42284445 - AluYb8 SINE Alu 0 308 225 304 276 133 0 chrX 120315485 120315583 -42284347 + MER81 DNA DNA 4 114 0 2025 166 52 41 chrX 120315989 120316540 -42283390 - MLT2A2 LTR ERVL 0 554 1 232 275 66 0 chrX 120316565 120316656 -42283274 + L1MEc LINE L1 51 147 -6249 1051 216 61 90 chrX 120316709 120316745 -42283185 + L1MEc LINE L1 1632 1668 -4728 3090 229 38 2 chrX 120316745 120317373 -42282557 - MER82 DNA MER2_type -1 652 2 1051 216 61 90 chrX 120317373 120317738 -42282192 + L1MEc LINE L1 1668 2021 -4375 1654 191 3 0 chrX 120317738 120318031 -42281899 + AluJb SINE Alu 1 294 -18 1051 216 61 90 chrX 120318031 120318073 -42281857 + L1MEc LINE L1 2021 2063 -4333 713 230 35 0 chrX 120318113 120318287 -42281643 - L1M4 LINE L1 -3571 2575 2396 2005 219 113 28 chrX 120318290 120319102 -42280828 + L1MEc LINE L1 2067 2913 -3302 2283 96 36 0 chrX 120319769 120320070 -42279860 + AluSx SINE Alu 1 312 0 573 230 191 7 chrX 120320415 120320567 -42279363 - MER5A DNA MER1_type 0 189 10 771 340 83 56 chrX 120320655 120320976 -42278954 + L3 LINE CR1 38 349 -1228 2497 77 0 6 chrX 120320976 120321289 -42278641 - AluY SINE Alu 0 311 1 771 340 83 56 chrX 120321289 120321578 -42278352 + L3 LINE CR1 349 665 -912 360 345 95 6 chrX 120321578 120321746 -42278184 - MER5A DNA MER1_type 0 189 7 1725 225 197 55 chrX 120321984 120322645 -42277285 + L1MC/D LINE L1 18 927 -5613 3876 116 14 215 chrX 120322648 120323914 -42276016 - pTR5 LTR ERV1 0 2606 1524 8765 136 17 46 chrX 120323914 120326288 -42273642 + L1MA8 LINE L1 3780 6106 -185 6438 87 7 2 chrX 120326291 120327166 -42272764 - L1PA14 LINE L1 -4 6157 5279 * 7324 117 25 4 chrX 120327164 120328618 -42271312 + L1MA3 LINE L1 4819 6305 0 4827 230 71 22 chrX 120328630 120328951 -42270979 + L1MC/D LINE L1 4133 4437 -2199 933 131 8 0 chrX 120328951 120329081 -42270849 - FLAM_C SINE Alu -1 132 2 4827 230 71 22 chrX 120329081 120329875 -42270055 + L1MC/D LINE L1 4437 5190 -1446 225 0 0 0 chrX 120329875 120329900 -42270030 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4827 230 71 22 chrX 120329900 120330518 -42269412 + L1MC/D LINE L1 5190 5776 -860 656 24 12 0 chrX 120330518 120330600 -42269330 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1882 134 4 4 chrX 120330602 120330878 -42269052 - AluJo SINE Alu -36 276 1 4827 230 71 22 chrX 120330878 120330931 -42268999 + L1MC/D LINE L1 5776 6029 -607 2603 167 82 15 chrX 120331985 120332103 -42267827 - MLT1D LTR MaLR 0 505 396 2339 103 168 11 chrX 120332103 120332473 -42267457 - MSTA LTR MaLR 0 428 1 2603 167 82 15 chrX 120332473 120332827 -42267103 - MLT1D LTR MaLR -109 396 1 3458 216 57 24 chrX 120333526 120333812 -42266118 + L2 LINE L2 1407 1682 -1632 2485 71 3 0 chrX 120333812 120334108 -42265822 - AluSp SINE Alu -16 297 1 3458 216 57 24 chrX 120334108 120334693 -42265237 + L2 LINE L2 1682 2307 -1007 1432 222 89 18 chrX 120334693 120335051 -42264879 + MLT1E1 LTR MaLR 25 397 -196 559 245 36 47 chrX 120335051 120335243 -42264687 + L2 LINE L2 3124 3313 0 513 307 34 21 chrX 120335455 120335667 -42264263 + MIR SINE MIR 21 233 -29 698 281 64 51 chrX 120335715 120335860 -42264070 - L1ME LINE L1 -428 5693 5551 2063 139 0 0 chrX 120335860 120336155 -42263775 - AluSx SINE Alu -17 295 1 698 281 64 51 chrX 120336155 120336418 -42263512 - L1ME LINE L1 -570 5551 5280 814 134 10 119 chrX 120336427 120336621 -42263309 + L1MB7 LINE L1 6003 6175 -9 535 229 104 40 chrX 120336647 120336775 -42263155 - L1ME4a LINE L1 -286 5835 5688 1613 169 53 30 chrX 120336775 120337076 -42262854 + AluJo SINE Alu 1 308 -4 535 229 104 40 chrX 120337076 120337148 -42262782 - L1ME4a LINE L1 -433 5688 5622 186 43 0 0 chrX 120337183 120337206 -42262724 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 202 185 0 37 chrX 120337663 120337717 -42262213 + (TAA)n Simple_repeat Simple_repeat 3 54 0 1997 116 0 0 chrX 120338008 120338275 -42261655 + AluSx SINE Alu 1 267 -45 511 237 148 0 chrX 120338285 120338420 -42261510 + MIR3 SINE MIR 48 202 -6 501 190 10 0 chrX 120338581 120338681 -42261249 + L1MB8 LINE L1 6076 6176 -2 30 45 0 0 chrX 120339140 120339184 -42260746 + AT_rich Low_complexity Low_complexity 1 44 0 506 216 50 85 chrX 120339434 120339538 -42260392 - L1MC4a LINE L1 -1886 5922 5827 2330 97 0 3 chrX 120339538 120339837 -42260093 - AluSx SINE Alu -14 298 1 506 216 50 85 chrX 120339837 120339931 -42259999 - L1MC4a LINE L1 -1981 5827 5731 2111 112 10 10 chrX 120340317 120340611 -42259319 + AluSx SINE Alu 1 294 -18 538 263 26 23 chrX 120340619 120340803 -42259127 + MIR SINE MIR 30 212 -50 1996 112 0 41 chrX 120341232 120341574 -42258356 - AluSq SINE Alu 0 330 1 208 232 0 36 chrX 120341665 120341688 -42258242 + GA-rich Low_complexity Low_complexity 6 28 -31 2487 87 0 0 chrX 120341688 120341999 -42257931 + AluSx SINE Alu 1 311 -1 208 232 0 36 chrX 120341999 120342031 -42257899 + GA-rich Low_complexity Low_complexity 28 59 0 250 146 0 0 chrX 120342038 120342079 -42257851 + L1MC4 LINE L1 5543 5583 -538 2017 132 13 19 chrX 120342432 120342743 -42257187 - AluJb SINE Alu -3 309 1 1461 217 95 94 chrX 120342745 120343322 -42256608 - MLT1E LTR MaLR -1 592 15 2597 215 72 17 chrX 120343348 120344578 -42255352 + L1MC4 LINE L1 6458 7902 -140 1369 209 79 105 chrX 120344675 120344935 -42254995 + L1MC4 LINE L1 5555 5820 -2222 2345 99 3 0 chrX 120344935 120345238 -42254692 + AluSp SINE Alu 1 304 -9 1369 209 79 105 chrX 120345238 120345643 -42254287 + L1MC4 LINE L1 5820 8042 0 1117 146 17 88 chrX 120345707 120345865 -42254065 + L1M3 LINE L1 5444 5581 -590 180 0 0 0 chrX 120345865 120345885 -42254045 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1117 146 17 88 chrX 120345885 120345966 -42253964 + L1M3 LINE L1 5581 5666 -505 2269 111 0 3 chrX 120346121 120346428 -42253502 - AluSx SINE Alu -6 306 1 1779 117 32 68 chrX 120346428 120346737 -42253193 - AluSx SINE Alu -13 299 2 1787 119 20 82 chrX 120346868 120347206 -42252724 + AluSx SINE Alu 1 319 0 450 297 66 36 chrX 120348188 120348393 -42251537 - MIR SINE MIR -7 255 33 201 74 0 0 chrX 120348433 120348460 -42251470 + (TTTTTA)n Simple_repeat Simple_repeat 1 27 0 512 319 26 52 chrX 120348766 120348995 -42250935 + MIR SINE MIR 8 230 -32 186 310 78 35 chrX 120349239 120349355 -42250575 + L3 LINE CR1 951 1071 -506 279 268 0 24 chrX 120350370 120350452 -42249478 + (CGG)n Simple_repeat Simple_repeat 2 81 0 208 277 0 0 chrX 120351546 120351593 -42248337 + G-rich Low_complexity Low_complexity 1 47 0 321 26 0 0 chrX 120351991 120352029 -42247901 + (TGG)n Simple_repeat Simple_repeat 1 38 0 648 252 114 49 chrX 120352389 120352456 -42247474 - MIR SINE MIR 0 262 201 2189 116 3 0 chrX 120352456 120352750 -42247180 - AluSq SINE Alu -18 295 1 648 252 114 49 chrX 120352750 120352928 -42247002 - MIR SINE MIR -61 201 1 519 319 91 13 chrX 120353386 120353684 -42246246 + MER102b DNA MER1_type 1 321 -20 413 291 41 52 chrX 120354154 120354326 -42245604 - MER20B DNA MER1_type -594 189 20 2427 79 0 0 chrX 120354698 120354990 -42244940 - AluSg SINE Alu -18 292 1 1705 244 117 44 chrX 120355052 120355979 -42243951 - L2 LINE L2 -21 3292 2283 1958 131 0 7 chrX 120356178 120356460 -42243470 + AluSx SINE Alu 1 280 -32 432 0 0 0 chrX 120356463 120356511 -42243419 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 2391 82 0 0 chrX 120359642 120359935 -42239995 - AluSx SINE Alu -17 295 3 1749 151 7 33 chrX 120360016 120360315 -42239615 + AluJo SINE Alu 1 291 -21 459 169 20 156 chrX 120360328 120360532 -42239398 + L1MA10 LINE L1 5994 6333 -1 1405 131 15 5 chrX 120360895 120361101 -42238829 + L1PB4 LINE L1 5945 6152 -4 228 268 42 103 chrX 120361153 120361366 -42238564 - L1ME4a LINE L1 -86 6035 5836 1157 149 0 0 chrX 120361402 120361570 -42238360 + L1PB4 LINE L1 5986 6153 -3 249 108 0 0 chrX 120361592 120361629 -42238301 + (TCC)n Simple_repeat Simple_repeat 3 39 0 723 283 39 21 chrX 120362096 120362379 -42237551 + MARNA DNA Mariner 276 563 -23 320 240 67 58 chrX 120363373 120363477 -42236453 + MIR SINE MIR 92 196 -66 499 221 137 0 chrX 120363505 120363636 -42236294 - MIR SINE MIR -1 261 113 30 59 0 0 chrX 120363656 120363707 -42236223 + AT_rich Low_complexity Low_complexity 1 51 0 6993 123 9 44 chrX 120363730 120363790 -42236140 - L1MC1 LINE L1 -1 6332 6271 2469 84 3 0 chrX 120363790 120364101 -42235829 + AluSx SINE Alu 1 312 0 6993 123 9 44 chrX 120364101 120365353 -42234577 - L1MC1 LINE L1 -62 6271 5068 2491 208 96 3 chrX 120365354 120365969 -42233961 - L1MC1 LINE L1 -1208 4938 4267 1967 134 0 0 chrX 120367265 120367541 -42232389 + AluSx SINE Alu 1 276 -36 465 122 0 0 chrX 120367747 120367821 -42232109 + (TG)n Simple_repeat Simple_repeat 2 75 0 181 54 54 0 chrX 120367927 120367940 -42231990 + (TAAA)n Simple_repeat Simple_repeat 2 13 -27 1571 168 65 3 chrX 120367940 120368232 -42231698 + AluJb SINE Alu 1 310 -2 181 54 54 0 chrX 120368232 120368255 -42231675 + (TAAA)n Simple_repeat Simple_repeat 13 40 0 320 146 132 4 chrX 120368642 120368723 -42231207 - L1MA9 LINE L1 0 6334 6226 180 176 0 0 chrX 120369020 120369054 -42230876 + A-rich Low_complexity Low_complexity 4 37 0 822 104 0 0 chrX 120369567 120369673 -42230257 - AluSq/x SINE Alu -207 106 1 2073 106 0 21 chrX 120369889 120370173 -42229757 + AluJo SINE Alu 14 291 -21 189 0 0 0 chrX 120370791 120370812 -42229118 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 252 130 0 0 chrX 120371421 120371467 -42228463 + (TC)n Simple_repeat Simple_repeat 2 47 0 249 189 38 0 chrX 120372511 120372564 -42227366 + L2 LINE L2 3188 3242 -30 198 71 0 0 chrX 120376595 120376623 -42223307 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chrX 120377234 120377255 -42222675 + AT_rich Low_complexity Low_complexity 1 21 0 1618 90 40 5 chrX 120378277 120378499 -42221431 + MER30 DNA MER1_type 1 230 0 21 0 0 0 chrX 120379301 120379322 -42220608 + AT_rich Low_complexity Low_complexity 1 21 0 224 365 48 24 chrX 120380722 120380848 -42219082 - L2 LINE L2 -15 3257 3129 297 374 67 8 chrX 120381004 120381434 -42218496 - L2 LINE L2 -290 2982 2525 480 157 29 49 chrX 120384863 120384965 -42214965 + L2 LINE L2 3187 3286 -27 555 245 38 33 chrX 120385029 120385213 -42214717 - MIR3 SINE MIR -1 207 23 846 133 0 22 chrX 120385446 120385581 -42214349 + FLAM_C SINE Alu 1 132 -1 23 0 0 0 chrX 120385581 120385604 -42214326 + AT_rich Low_complexity Low_complexity 1 23 0 357 293 49 24 chrX 120385846 120386010 -42213920 + MER5B DNA MER1_type 7 174 -4 320 193 30 78 chrX 120386344 120386510 -42213420 + (CA)n Simple_repeat Simple_repeat 1 158 0 22 56 0 0 chrX 120387674 120387710 -42212220 + GC_rich Low_complexity Low_complexity 1 36 0 602 281 122 53 chrX 120389075 120389566 -42210364 + L1ME4a LINE L1 5294 5818 -303 2344 154 52 3 chrX 120389588 120389972 -42209958 + MER83 LTR ERV1 3 405 -43 500 179 207 0 chrX 120389979 120390119 -42209811 + L1ME4a LINE L1 5842 6010 -111 366 23 0 0 chrX 120390380 120390423 -42209507 + (CA)n Simple_repeat Simple_repeat 2 44 0 403 173 13 0 chrX 120391490 120391565 -42208365 + L2 LINE L2 3229 3304 -9 729 266 25 0 chrX 120391576 120391779 -42208151 + L1ME4a LINE L1 5545 5752 -369 1074 233 89 41 chrX 120391783 120392285 -42207645 + L2 LINE L2 2750 3305 -8 380 196 120 0 chrX 120392316 120392408 -42207522 + L1ME4a LINE L1 5950 6052 -69 297 271 160 82 chrX 120392602 120392846 -42207084 - L2 LINE L2 -3 3269 3007 207 100 0 0 chrX 120392877 120392907 -42207023 + (A)n Simple_repeat Simple_repeat 1 30 0 441 259 0 76 chrX 120392949 120393080 -42206850 - MER5A DNA MER1_type 0 189 69 776 244 71 4 chrX 120393085 120393323 -42206607 - MIR SINE MIR -3 259 6 2124 100 45 3 chrX 120393407 120393696 -42206234 + AluJo SINE Alu 1 301 -11 1387 297 10 5 chrX 120393885 120394269 -42205661 + LTR16A LTR ERVL 59 444 -6 230 316 32 69 chrX 120394271 120394489 -42205441 + L2 LINE L2 2807 3016 -297 * 650 214 88 6 chrX 120394487 120394646 -42205284 - MIR SINE MIR -70 192 21 565 236 147 0 chrX 120394994 120395151 -42204779 + MER5A DNA MER1_type 8 187 -2 388 276 26 39 chrX 120395163 120395319 -42204611 - L2 LINE L2 -996 2318 2165 255 195 86 102 chrX 120395409 120395537 -42204393 + Charlie8 DNA MER1_type 31 156 -2261 873 115 0 0 chrX 120395537 120395650 -42204280 + AluSq/x SINE Alu 35 147 -166 318 127 0 0 chrX 120395666 120395721 -42204209 + Alu SINE Alu 246 300 0 417 272 78 49 chrX 120395757 120396000 -42203930 + Charlie8 DNA MER1_type 204 453 -1964 445 354 31 17 chrX 120396087 120396440 -42203490 - L2 LINE L2 -1152 2162 1805 2307 96 0 10 chrX 120396616 120396917 -42203013 - AluSq SINE Alu -15 298 1 444 19 0 0 chrX 120397500 120397553 -42202377 + (CA)n Simple_repeat Simple_repeat 1 53 0 507 263 26 16 chrX 120398088 120398282 -42201648 + L2 LINE L2 621 816 -2498 277 342 9 0 chrX 120398281 120398392 -42201538 + L2 LINE L2 1109 1220 -2094 * 796 185 26 65 chrX 120398401 120398633 -42201297 + L1M4 LINE L1 4179 4401 -1745 372 193 25 52 chrX 120398621 120398775 -42201155 + L1MB8 LINE L1 5842 5985 -193 * 1309 274 82 87 chrX 120398806 120399243 -42200687 + L2 LINE L2 1238 1676 -1638 2126 127 0 9 chrX 120399243 120399559 -42200371 + AluSq SINE Alu 1 313 0 1309 274 82 87 chrX 120399559 120400131 -42199799 + L2 LINE L2 1676 2242 -1072 221 224 178 28 chrX 120400185 120400292 -42199638 + L2 LINE L2 2252 2374 -940 2334 93 0 0 chrX 120401359 120401649 -42198281 + AluSx SINE Alu 1 290 -22 24 0 0 0 chrX 120401701 120401725 -42198205 + AT_rich Low_complexity Low_complexity 1 24 0 192 135 0 0 chrX 120402311 120402348 -42197582 + (CCA)n Simple_repeat Simple_repeat 3 39 0 365 139 89 0 chrX 120404069 120404148 -42195782 - MIR SINE MIR -105 157 72 854 268 33 7 chrX 120404148 120404450 -42195480 - L1ME4a LINE L1 -213 5908 5599 486 190 52 26 chrX 120404587 120404703 -42195227 + MER53 DNA DNA 71 189 0 384 202 182 0 chrX 120405106 120405205 -42194725 + LTR67 LTR ERVL 434 550 -7 215 290 0 0 chrX 120405458 120405520 -42194410 - MIR SINE MIR 0 262 201 3273 97 14 111 chrX 120405524 120405731 -42194199 + MER4B LTR ERV1 1 226 -553 2307 86 13 10 chrX 120405731 120406035 -42193895 + AluSq SINE Alu 1 305 -8 3273 97 14 111 chrX 120406035 120406489 -42193441 + MER4B LTR ERV1 226 769 -10 536 284 49 0 chrX 120406502 120406685 -42193245 - MIR SINE MIR -68 194 3 230 273 28 0 chrX 120406759 120406847 -42193083 - MIR SINE MIR -64 144 60 291 301 159 0 chrX 120407268 120407444 -42192486 + L1ME4a LINE L1 4629 4832 -1314 206 265 0 0 chrX 120407455 120407504 -42192426 + (TA)n Simple_repeat Simple_repeat 2 50 0 3199 168 47 33 chrX 120407635 120408315 -42191615 + LTR8A LTR ERV1 1 691 0 999 79 6 61 chrX 120408315 120408480 -42191450 - L1MA7 LINE L1 -251 6040 5885 682 301 91 3 chrX 120408521 120408830 -42191100 + L1ME4a LINE L1 5519 5854 -267 480 304 18 32 chrX 120409627 120409844 -42190086 - L2 LINE L2 -1 3312 3099 892 283 4 8 chrX 120410003 120410254 -42189676 - MIR SINE MIR -12 250 1 238 280 11 11 chrX 120410487 120410580 -42189350 - L2 LINE L2 -289 2983 2891 548 207 14 41 chrX 120411108 120411253 -42188677 + MIR SINE MIR 115 255 -7 307 252 42 63 chrX 120411704 120411847 -42188083 - MIR3 SINE MIR -4 204 65 206 191 0 21 chrX 120412226 120412273 -42187657 + L2 LINE L2 3264 3309 -4 5236 149 69 54 chrX 120412356 120413541 -42186389 + pTR5 LTR ERV1 743 1918 -520 4041 119 47 188 chrX 120413542 120414689 -42185241 + pTR5 LTR ERV1 1435 2419 -19 363 209 0 14 chrX 120414690 120414768 -42185162 - FRAM/FAM SINE Alu -91 75 9 6337 133 142 120 chrX 120414768 120416424 -42183506 + pTR5 LTR ERV1 747 2438 0 1380 155 16 12 chrX 120416911 120417162 -42182768 - L1MB7 LINE L1 0 6184 5933 215 302 48 24 chrX 120417886 120418012 -42181918 + L2 LINE L2 2365 2493 -821 188 384 57 0 chrX 120418029 120418188 -42181742 + L2 LINE L2 2598 2765 -549 286 267 248 24 chrX 120418427 120418633 -42181297 - MIR SINE MIR -4 258 7 36 23 0 0 chrX 120419187 120419230 -42180700 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chrX 120419918 120419939 -42179991 + AT_rich Low_complexity Low_complexity 1 21 0 478 65 0 0 chrX 120421297 120421607 -42178323 + AluYb8 SINE Alu 2 311 0 621 177 8 8 chrX 120421928 120422052 -42177878 + L1M4 LINE L1 2616 2739 -3407 1103 204 42 99 chrX 120422057 120422439 -42177491 - MLT1A1 LTR MaLR -5 360 1 778 134 0 97 chrX 120422477 120422611 -42177319 + FLAM_A SINE Alu 2 122 -11 2456 91 0 3 chrX 120422618 120422945 -42176985 + AluSx SINE Alu 1 312 0 1051 176 31 16 chrX 120422949 120423204 -42176726 + L1M4 LINE L1 2752 3010 -3136 1855 161 61 43 chrX 120423204 120423381 -42176549 + LTR48 LTR ERV1 1 173 -534 180 0 0 0 chrX 120423381 120423401 -42176529 + (TC)n Simple_repeat Simple_repeat 2 21 0 1855 161 61 43 chrX 120423401 120423913 -42176017 + LTR48 LTR ERV1 173 707 0 2132 233 56 62 chrX 120423913 120424281 -42175649 + L1M4 LINE L1 3007 3376 -2770 2055 127 7 0 chrX 120424281 120424603 -42175327 + AluSx SINE Alu 1 324 0 2132 233 56 62 chrX 120424603 120425049 -42174881 + L1M4 LINE L1 3376 3817 -2329 368 311 17 0 chrX 120425286 120425405 -42174525 + L2 LINE L2 2977 3097 -175 300 27 0 0 chrX 120425803 120425840 -42174090 + (TG)n Simple_repeat Simple_repeat 1 37 0 2381 116 22 19 chrX 120425856 120426217 -42173713 - THE1B LTR MaLR 0 364 3 622 228 21 7 chrX 120426291 120426436 -42173494 + MER20 DNA MER1_type 1 147 -72 247 242 16 0 chrX 120426546 120426608 -42173322 + (TA)n Simple_repeat Simple_repeat 1 63 0 871 169 19 0 chrX 120426626 120426786 -42173144 - MER90 LTR ERV1 -155 459 297 292 143 43 43 chrX 120426777 120426847 -42173083 + MER20 DNA MER1_type 150 219 0 * 1306 166 67 88 chrX 120426904 120427037 -42172893 + MLT1A1 LTR MaLR 1 135 -230 1659 165 41 24 chrX 120427037 120427328 -42172602 + AluJo SINE Alu 5 300 -12 1306 166 67 88 chrX 120427328 120427567 -42172363 + MLT1A1 LTR MaLR 135 365 0 3057 123 7 0 chrX 120428052 120428499 -42171431 - L1PA16 LINE L1 0 6166 5717 374 83 0 17 chrX 120428610 120428670 -42171260 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 1216 165 47 64 chrX 120428695 120428992 -42170938 - MER90 LTR ERV1 -71 543 252 739 181 35 125 chrX 120429146 120429193 -42170737 + MSTD LTR MaLR 93 143 -253 2378 68 0 17 chrX 120429193 120429486 -42170444 - AluSg1 SINE Alu -21 288 1 739 181 35 125 chrX 120429486 120429718 -42170212 + MSTD LTR MaLR 143 396 0 283 316 88 15 chrX 120430300 120430436 -42169494 + MIR SINE MIR 87 232 -30 545 276 97 16 chrX 120431538 120431723 -42168207 + MIR SINE MIR 50 249 -13 732 116 16 16 chrX 120431849 120431970 -42167960 - AluSg/x SINE Alu -4 308 188 416 315 91 0 chrX 120431970 120432113 -42167817 + L2 LINE L2 3117 3272 0 247 209 0 0 chrX 120432484 120432527 -42167403 - L2 LINE L2 -7 3306 3264 274 287 51 45 chrX 120432553 120432710 -42167220 + L2 LINE L2 3146 3303 -10 231 286 0 0 chrX 120433658 120433721 -42166209 + L1ME3A LINE L1 5693 5755 -604 1192 38 0 0 chrX 120433734 120433865 -42166065 + AluSc SINE Alu 1 131 -178 2204 105 20 29 chrX 120433941 120434247 -42165683 + AluSx SINE Alu 1 303 -9 254 307 107 0 chrX 120434416 120434566 -42165364 + L1ME3A LINE L1 5990 6155 -15 412 282 56 72 chrX 120435782 120435977 -42163953 + L2 LINE L2 445 636 -2678 298 254 0 0 chrX 120435980 120436035 -42163895 + MIR SINE MIR 39 93 -169 468 309 97 80 chrX 120436051 120436362 -42163568 + L2 LINE L2 2952 3267 -5 1410 56 0 0 chrX 120436362 120436542 -42163388 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 300 53 0 0 chrX 120437043 120437081 -42162849 + (CAGCC)n Simple_repeat Simple_repeat 5 42 0 1209 343 78 28 chrX 120438112 120438935 -42160995 + L2 LINE L2 1612 2475 -839 2445 107 0 0 chrX 120439019 120439329 -42160601 - AluSx SINE Alu -2 310 1 234 278 11 56 chrX 120439362 120439452 -42160478 + L2 LINE L2 2664 2749 -565 2369 86 0 7 chrX 120439669 120439971 -42159959 - AluSx SINE Alu -12 300 1 233 318 16 78 chrX 120440011 120440140 -42159790 + L2 LINE L2 3143 3263 -9 733 246 39 11 chrX 120440176 120440355 -42159575 + MIR3 SINE MIR 1 184 -24 2783 107 62 0 chrX 120440709 120441128 -42158802 + L1PA10 LINE L1 5465 5909 -259 2344 121 0 0 chrX 120441128 120441434 -42158496 + AluSx SINE Alu 1 306 -6 2589 37 0 3 chrX 120441560 120441854 -42158076 + AluY SINE Alu 1 293 -18 1623 147 79 18 chrX 120441861 120441995 -42157935 + AluJo SINE Alu 4 128 -184 2341 113 0 6 chrX 120441995 120442306 -42157624 + AluSg SINE Alu 1 309 -1 1623 147 79 18 chrX 120442306 120442450 -42157480 + AluJo SINE Alu 128 299 -13 2456 94 0 0 chrX 120442576 120442885 -42157045 + AluY SINE Alu 1 309 -2 2054 97 15 0 chrX 120443147 120443415 -42156515 - AluSg SINE Alu -12 298 27 330 89 0 0 chrX 120443439 120443484 -42156446 - AluSg SINE Alu -255 45 1 595 202 30 99 chrX 120443747 120443918 -42156012 + MIR SINE MIR 74 228 -34 2197 112 0 0 chrX 120443918 120444205 -42155725 - AluSx SINE Alu -12 300 14 595 202 30 99 chrX 120444205 120444237 -42155693 + MIR SINE MIR 228 261 -1 218 283 17 0 chrX 120445013 120445073 -42154857 + GA-rich Low_complexity Low_complexity 5 65 0 1859 122 53 43 chrX 120445106 120445250 -42154680 + AluSx SINE Alu 1 142 -170 2589 57 0 3 chrX 120445250 120445551 -42154379 + AluY SINE Alu 1 300 -11 1833 99 0 0 chrX 120445551 120445782 -42154148 + AluSg/x SINE Alu 73 305 -7 1859 122 53 43 chrX 120445782 120445939 -42153991 + AluSx SINE Alu 141 306 -6 2233 97 40 3 chrX 120445967 120446267 -42153663 + AluSx SINE Alu 1 311 -1 2253 115 7 0 chrX 120447069 120447364 -42152566 + AluSx SINE Alu 1 297 -15 2001 141 3 29 chrX 120448205 120448511 -42151419 + AluJb SINE Alu 1 298 -14 2179 108 0 10 chrX 120449043 120449339 -42150591 + AluSq SINE Alu 1 293 -20 2431 65 3 7 chrX 120449581 120449918 -42150012 + AluSp SINE Alu 1 313 0 2356 104 0 3 chrX 120450184 120450492 -42149438 - AluSx SINE Alu -2 310 4 691 209 82 37 chrX 120450582 120450850 -42149080 - L1MC5 LINE L1 -120 7841 7562 239 319 0 14 chrX 120451188 120451257 -42148673 + L2 LINE L2 3223 3290 -23 214 25 25 50 chrX 120451986 120452026 -42147904 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 250 241 35 23 chrX 120452026 120452113 -42147817 - MIR SINE MIR -55 207 120 890 103 0 0 chrX 120452113 120452230 -42147700 + AluJb SINE Alu 1 117 -195 22 0 0 0 chrX 120452231 120452253 -42147677 + AT_rich Low_complexity Low_complexity 1 22 0 2367 98 0 0 chrX 120452260 120452556 -42147374 + AluSx SINE Alu 1 296 -16 558 0 0 0 chrX 120452557 120452619 -42147311 + (CA)n Simple_repeat Simple_repeat 2 63 0 216 267 114 23 chrX 120452621 120452709 -42147221 + MIR SINE MIR 53 147 -62 214 122 0 41 chrX 120453061 120453110 -42146820 + (TGGGGG)n Simple_repeat Simple_repeat 2 48 0 2262 89 3 7 chrX 120453145 120453447 -42146483 + AluSq SINE Alu 1 301 -12 2583 64 0 3 chrX 120453448 120453760 -42146170 + AluY SINE Alu 1 311 0 189 0 0 0 chrX 120455881 120455902 -42144028 + (A)n Simple_repeat Simple_repeat 1 21 0 383 336 16 0 chrX 120456264 120456386 -42143544 - MIR SINE MIR -57 151 28 195 330 19 28 chrX 120456561 120456667 -42143263 + MER5A DNA MER1_type 80 184 -5 417 39 0 0 chrX 120456918 120456969 -42142961 + (CA)n Simple_repeat Simple_repeat 2 52 0 1986 89 8 0 chrX 120459172 120459430 -42140500 + AluSp SINE Alu 48 307 -6 2343 113 0 0 chrX 120459589 120459890 -42140040 + AluSx SINE Alu 1 301 -11 998 172 56 37 chrX 120459915 120460130 -42139800 - MER20 DNA MER1_type 0 219 1 1907 130 10 36 chrX 120460153 120460461 -42139469 - AluJo SINE Alu -12 300 1 953 178 39 0 chrX 120460461 120460641 -42139289 - MER58B DNA MER1_type -9 332 146 2108 134 7 0 chrX 120460648 120460955 -42138975 - AluJo SINE Alu -2 310 2 1101 105 7 0 chrX 120461021 120461173 -42138757 - AluSq SINE Alu -158 155 3 1980 137 10 3 chrX 120461481 120461774 -42138156 - AluJb SINE Alu -17 295 1 1829 123 0 8 chrX 120461930 120462182 -42137748 + AluSx SINE Alu 1 250 -62 2156 100 14 3 chrX 120462220 120462509 -42137421 - AluSc SINE Alu -17 292 1 309 163 21 142 chrX 120462521 120462566 -42137364 - L1MC4 LINE L1 -17 8025 7976 2328 92 31 0 chrX 120462566 120462860 -42137070 + AluSp SINE Alu 1 303 -10 309 163 21 142 chrX 120462860 120462955 -42136975 - L1MC4 LINE L1 -66 7976 7902 330 217 154 58 chrX 120462977 120463616 -42136314 - L1MC4 LINE L1 -229 7813 6959 2373 92 0 3 chrX 120463848 120464142 -42135788 + AluSg SINE Alu 1 293 -17 2096 50 99 39 chrX 120464142 120464425 -42135505 + AluY SINE Alu 1 300 -11 1140 110 0 0 chrX 120464996 120465141 -42134789 + AluSc SINE Alu 85 229 -80 446 250 132 4 chrX 120465362 120465510 -42134420 + MIR SINE MIR 9 172 -61 2425 113 96 5 chrX 120465510 120465928 -42134002 - LTR56 LTR ERV1 0 442 10 1424 139 0 9 chrX 120465957 120466172 -42133758 + AluJb SINE Alu 85 297 -15 196 197 0 148 chrX 120466186 120466247 -42133683 + MIR SINE MIR 200 251 -11 * 241 180 39 33 chrX 120466236 120466326 -42133604 + MIR SINE MIR 44 114 -94 473 257 74 64 chrX 120466421 120466623 -42133307 - MIR SINE MIR -2 260 57 205 303 9 18 chrX 120467408 120467517 -42132413 + (CATA)n Simple_repeat Simple_repeat 3 110 0 2023 114 39 26 chrX 120467635 120467941 -42131989 + AluSx SINE Alu 1 310 -2 200 274 21 84 chrX 120468281 120468346 -42131584 + MIR3 SINE MIR 110 169 -39 2358 68 20 3 chrX 120468346 120468640 -42131290 - AluY SINE Alu -12 299 1 200 274 21 84 chrX 120468640 120468669 -42131261 + MIR3 SINE MIR 169 198 -10 1857 100 40 0 chrX 120670113 120670362 -41929568 - AluY SINE Alu -10 301 43 2463 81 0 0 chrX 120670362 120670657 -41929273 - AluSg SINE Alu -15 295 1 432 55 0 0 chrX 120670962 120671017 -41928913 + (CA)n Simple_repeat Simple_repeat 1 55 0 2488 78 0 3 chrX 120671071 120671379 -41928551 + AluSg SINE Alu 1 307 -3 27 0 0 0 chrX 120673085 120673112 -41926818 + GC_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chrX 120673489 120673521 -41926409 + GC_rich Low_complexity Low_complexity 1 32 0 402 278 12 6 chrX 120676399 120676568 -41923362 + (TG)n Simple_repeat Simple_repeat 2 171 0 1917 114 49 52 chrX 120676706 120677014 -41922916 - AluSg1 SINE Alu -2 307 1 272 229 115 0 chrX 120677247 120677308 -41922622 + L2 LINE L2 3205 3272 0 2204 91 35 3 chrX 120677733 120678018 -41921912 + AluSx SINE Alu 1 294 -18 245 29 29 0 chrX 120678037 120678071 -41921859 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 982 198 39 0 chrX 120678245 120678427 -41921503 + MER5A DNA MER1_type 1 189 0 1958 103 48 106 chrX 120678658 120678843 -41921087 + THE1C LTR MaLR 2 153 -222 2201 128 0 0 chrX 120678843 120679139 -41920791 - AluSx SINE Alu -16 296 1 1958 103 48 106 chrX 120679139 120679350 -41920580 + THE1C LTR MaLR 153 375 0 460 330 119 44 chrX 120679364 120679794 -41920136 - L2 LINE L2 -1 3271 2810 207 0 0 0 chrX 120679918 120679941 -41919989 + (A)n Simple_repeat Simple_repeat 1 23 0 358 237 22 152 chrX 120680331 120680384 -41919546 - L2 LINE L2 -557 2757 2699 2253 118 0 0 chrX 120680384 120680680 -41919250 - AluSx SINE Alu -16 296 1 358 237 22 152 chrX 120680680 120680760 -41919170 - L2 LINE L2 -615 2699 2662 960 186 19 0 chrX 120680760 120680916 -41919014 + FRAM SINE Alu 1 159 -7 358 237 22 152 chrX 120680916 120681005 -41918925 - L2 LINE L2 -652 2662 2563 273 297 8 162 chrX 120681021 120681109 -41918821 - L2 LINE L2 -489 2825 2725 565 288 22 11 chrX 120681109 120681293 -41918637 + MER5A DNA MER1_type 4 189 0 273 297 8 162 chrX 120681293 120681403 -41918527 - L2 LINE L2 -589 2725 2676 1859 89 0 8 chrX 120681403 120681638 -41918292 + AluSc SINE Alu 1 233 -76 273 297 8 162 chrX 120681638 120681704 -41918226 - L2 LINE L2 -638 2676 2601 2398 91 0 7 chrX 120681953 120682260 -41917670 + AluSx SINE Alu 7 311 -1 276 135 19 0 chrX 120682270 120682322 -41917608 + L1PA16 LINE L1 6093 6145 -21 294 29 0 0 chrX 120682395 120682430 -41917500 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 225 75 42 chrX 120682498 120682618 -41917312 + L1ME3A LINE L1 6042 6165 -5 2366 84 0 7 chrX 120682805 120683102 -41916828 + AluSc SINE Alu 1 295 -14 2506 88 0 0 chrX 120683102 120683409 -41916521 + AluSc SINE Alu 1 307 -2 2019 174 88 72 chrX 120683696 120683944 -41915986 - MLT2B1 LTR ERVL 0 520 277 2327 101 0 0 chrX 120683944 120684241 -41915689 + AluSx SINE Alu 1 297 -15 2019 174 88 72 chrX 120684241 120684316 -41915614 - MLT2B1 LTR ERVL -243 277 205 1635 168 0 43 chrX 120684316 120684620 -41915310 - AluJo SINE Alu -21 291 1 2019 174 88 72 chrX 120684620 120684807 -41915123 - MLT2B1 LTR ERVL -315 205 1 2353 285 81 61 chrX 120684908 120685338 -41914592 - L2 LINE L2 0 3313 2893 1920 149 6 50 chrX 120685338 120685660 -41914270 + AluJo SINE Alu 5 312 0 2353 285 81 61 chrX 120685660 120686540 -41913390 - L2 LINE L2 -420 2893 2032 974 104 0 15 chrX 120686540 120686674 -41913256 + FLAM_C SINE Alu 1 132 -1 2353 285 81 61 chrX 120686674 120686960 -41912970 - L2 LINE L2 -1281 2032 1693 2145 147 0 0 chrX 120686960 120687272 -41912658 + AluSx SINE Alu 1 312 0 2353 285 81 61 chrX 120687272 120687345 -41912585 - L2 LINE L2 -1620 1693 1623 621 213 0 37 chrX 120687348 120687484 -41912446 + MER63 DNA MER1_type 2 758 -78 241 323 8 8 chrX 120687548 120687672 -41912258 - L1P LINE L1 -773 5378 5255 2306 98 0 0 chrX 120687965 120688260 -41911670 - AluSg SINE Alu -15 295 1 1622 139 8 19 chrX 120688368 120688626 -41911304 - AluJb SINE Alu -56 256 2 1949 129 23 10 chrX 120688633 120688936 -41910994 - AluJo SINE Alu -5 307 1 548 330 77 35 chrX 120689379 120689664 -41910266 - L2 LINE L2 0 3272 2976 2383 109 0 0 chrX 120689978 120690280 -41909650 - AluSg SINE Alu -8 302 1 2310 97 0 0 chrX 120691242 120691540 -41908390 + AluY SINE Alu 1 298 -13 1232 103 0 2 chrX 120691652 120691909 -41908021 + AluSg SINE Alu 2 308 0 318 248 108 39 chrX 120691931 120692060 -41907870 + L1MB7 LINE L1 6046 6183 -1 2179 118 0 0 chrX 120692072 120692517 -41907413 + AluSg SINE Alu 3 447 0 2505 62 3 16 chrX 120693353 120693661 -41906269 - AluY SINE Alu -7 304 1 2270 98 10 3 chrX 120693661 120693958 -41905972 - AluSc SINE Alu -10 299 1 1988 89 0 30 chrX 120693980 120694250 -41905680 - AluSg SINE Alu 0 310 49 2297 92 0 16 chrX 120694260 120694564 -41905366 - AluSg1 SINE Alu -10 299 1 1839 159 0 10 chrX 120694585 120694874 -41905056 - AluJb SINE Alu -22 290 5 405 274 32 51 chrX 120694976 120695133 -41904797 - L2 LINE L2 -254 3018 2865 5331 189 42 112 chrX 120695334 120695779 -41904151 + L1MB7 LINE L1 2596 3071 -3113 957 125 0 0 chrX 120695779 120695907 -41904023 + FLAM_C SINE Alu 1 128 -5 5331 189 42 112 chrX 120695907 120696308 -41903622 + L1MB7 LINE L1 3071 3499 -2685 2268 109 0 7 chrX 120696308 120696602 -41903328 - AluSg SINE Alu -18 292 1 5331 189 42 112 chrX 120696602 120697105 -41902825 + L1MB7 LINE L1 3499 4036 -2148 925 154 0 0 chrX 120697105 120697241 -41902689 + FLAM_C SINE Alu 6 141 -2 5331 189 42 112 chrX 120697241 120697815 -41902115 + L1MB7 LINE L1 4036 4649 -1535 2175 143 0 0 chrX 120697815 120698123 -41901807 + AluSx SINE Alu 1 308 -4 5331 189 42 112 chrX 120698123 120698547 -41901383 + L1MB7 LINE L1 4649 5101 -1083 1642 151 163 19 chrX 120698547 120698866 -41901064 - MLT1A1 LTR MaLR 0 365 1 5331 189 42 112 chrX 120698866 120698992 -41900938 + L1MB7 LINE L1 5101 5234 -950 1785 139 0 49 chrX 120698992 120699279 -41900651 + AluJo SINE Alu 1 273 -39 5331 189 42 112 chrX 120699279 120699327 -41900603 + L1MB7 LINE L1 5234 5284 -900 2059 156 0 3 chrX 120699327 120699634 -41900296 + AluJb SINE Alu 1 306 -6 5331 189 42 112 chrX 120699634 120700463 -41899467 + L1MB7 LINE L1 5284 6170 -14 2323 124 0 0 chrX 120700463 120700769 -41899161 + AluSx SINE Alu 1 306 -6 5331 189 42 112 chrX 120700769 120701096 -41898834 + L1MB7 LINE L1 6170 6132 -52 2410 74 7 0 chrX 120701096 120701393 -41898537 + AluSp SINE Alu 1 299 -14 5331 189 42 112 chrX 120701393 120701442 -41898488 + L1MB7 LINE L1 6131 6182 -2 2424 122 74 45 chrX 120701647 120701685 -41898245 - MSTB2 LTR MaLR 0 457 422 1927 96 78 32 chrX 120701685 120701967 -41897963 + AluSg SINE Alu 1 295 -15 2424 122 74 45 chrX 120701967 120702372 -41897558 - MSTB2 LTR MaLR -35 422 1 995 317 107 20 chrX 120702405 120702892 -41897038 + L2 LINE L2 2544 3101 -212 2389 109 0 0 chrX 120702892 120703195 -41896735 - AluSx SINE Alu -8 304 2 995 317 107 20 chrX 120703195 120703429 -41896501 + L2 LINE L2 3101 3313 0 557 292 75 7 chrX 120703448 120703755 -41896175 + L1ME4a LINE L1 5414 5759 -362 791 161 0 0 chrX 120703763 120703881 -41896049 + AluJo/FLAM SINE Alu 6 123 -189 2118 116 3 10 chrX 120703884 120704176 -41895754 - AluSg SINE Alu -20 290 1 266 26 53 0 chrX 120704182 120704220 -41895710 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 770 165 8 16 chrX 120704220 120704341 -41895589 - FLAM_C SINE Alu -22 121 2 2123 135 0 0 chrX 120704368 120704665 -41895265 + AluSx SINE Alu 1 297 -15 1089 145 54 0 chrX 120704665 120704831 -41895099 + AluJo/FRAM SINE Alu 134 308 -4 2132 153 71 29 chrX 120704844 120705255 -41894675 - MSTA LTR MaLR 0 428 1 294 243 14 68 chrX 120705256 120705276 -41894654 + L1ME4a LINE L1 5764 5784 -337 2117 90 0 14 chrX 120705276 120705582 -41894348 + AluSc SINE Alu 5 306 0 294 243 14 68 chrX 120705582 120705708 -41894222 + L1ME4a LINE L1 5784 5903 -218 2250 104 3 3 chrX 120705713 120706012 -41893918 + AluSx SINE Alu 1 299 -13 689 178 0 9 chrX 120706188 120706295 -41893635 + FLAM_A SINE Alu 4 109 -33 23 33 0 0 chrX 120706304 120706334 -41893596 + AT_rich Low_complexity Low_complexity 1 30 0 2480 86 0 3 chrX 120706349 120706663 -41893267 + AluSp SINE Alu 1 313 0 2457 74 3 3 chrX 120706797 120707096 -41892834 + AluSx SINE Alu 1 299 -13 1879 142 7 11 chrX 120707102 120707427 -41892503 + AluSx SINE Alu 1 324 0 344 215 131 0 chrX 120707441 120707548 -41892382 + L1ME4a LINE L1 5997 6117 -4 2096 50 99 39 chrX 120708254 120708537 -41891393 - AluY SINE Alu -11 300 1 2414 82 0 3 chrX 120708537 120708831 -41891099 - AluSg SINE Alu -17 293 1 1812 104 0 0 chrX 120708853 120709084 -41890846 + AluSx SINE Alu 1 231 -81 446 250 132 4 chrX 120709305 120709453 -41890477 + MIR SINE MIR 9 172 -61 2425 113 96 5 chrX 120709453 120709871 -41890059 - LTR56 LTR ERV1 0 442 10 1424 139 0 9 chrX 120709900 120710115 -41889815 + AluJb SINE Alu 85 297 -15 196 197 0 148 chrX 120710129 120710190 -41889740 + MIR SINE MIR 200 251 -11 * 241 180 39 33 chrX 120710179 120710269 -41889661 + MIR SINE MIR 44 114 -94 473 257 74 64 chrX 120710364 120710566 -41889364 - MIR SINE MIR -2 260 57 2215 104 3 0 chrX 120710803 120711090 -41888840 + AluSg SINE Alu 1 288 -22 216 0 0 0 chrX 120711194 120711218 -41888712 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2617 71 3 0 chrX 120711262 120711572 -41888358 - AluSp SINE Alu -2 311 1 404 298 41 23 chrX 120711602 120711773 -41888157 - L2 LINE L2 -227 3045 2872 * 1066 254 98 49 chrX 120711772 120712312 -41887618 - L2 LINE L2 0 3313 2751 1243 254 54 55 chrX 120712314 120712873 -41887057 - L2 LINE L2 -804 2510 1886 444 175 17 92 chrX 120712877 120712973 -41886957 + MER45 DNA AcHobo 6 93 -1488 2350 102 0 0 chrX 120712973 120713266 -41886664 - AluSg SINE Alu -17 293 1 444 175 17 92 chrX 120713266 120713289 -41886641 + MER45 DNA AcHobo 93 116 -1465 499 189 77 59 chrX 120713335 120713504 -41886426 + MLT1C LTR MaLR 63 234 -233 2081 112 36 3 chrX 120713504 120713807 -41886123 + AluSq SINE Alu 1 313 0 1309 117 17 0 chrX 120713820 120713999 -41885931 + AluSg/x SINE Alu 121 302 -10 395 162 15 0 chrX 120713999 120714067 -41885863 + MLT1C LTR MaLR 229 297 -170 2246 117 7 0 chrX 120714075 120714373 -41885557 + AluSx SINE Alu 1 300 -12 2391 69 0 26 chrX 120714375 120714680 -41885250 + AluY SINE Alu 1 297 -14 2259 60 35 7 chrX 120714680 120714964 -41884966 + AluY SINE Alu 1 292 -19 576 241 7 35 chrX 120714981 120715122 -41884808 - MIR SINE MIR -70 192 56 2106 128 24 0 chrX 120715173 120715469 -41884461 - AluSx SINE Alu -9 303 1 459 331 27 20 chrX 120716778 120716926 -41883004 - MIR SINE MIR -97 165 17 1786 117 40 60 chrX 120716991 120717290 -41882640 + AluSc SINE Alu 1 293 -16 1034 126 0 0 chrX 120717297 120717440 -41882490 + AluSq/x SINE Alu 1 143 -169 713 148 0 0 chrX 120717440 120717548 -41882382 + AluY SINE Alu 204 311 0 2161 123 0 17 chrX 120717551 120717851 -41882079 + AluSx SINE Alu 1 295 -17 2483 70 3 25 chrX 120717852 120718168 -41881762 + AluSp SINE Alu 1 309 -4 951 310 4 4 chrX 120718174 120718442 -41881488 - L3 LINE CR1 -13 1564 1297 2310 58 41 14 chrX 120718492 120718787 -41881143 - AluY SINE Alu -8 303 1 481 305 28 6 chrX 120718826 120719004 -41880926 - MIR SINE MIR -59 149 3 629 234 208 38 chrX 120719005 120719270 -41880660 - L3 LINE CR1 -282 1295 986 2397 94 3 0 chrX 120720035 120720334 -41879596 - AluSq SINE Alu -13 300 1 2637 50 0 0 chrX 120720610 120720912 -41879018 + AluY SINE Alu 1 302 -9 2141 88 3 47 chrX 120721103 120721400 -41878530 + AluSq SINE Alu 1 319 0 316 0 0 0 chrX 120721400 120721435 -41878495 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 2269 116 0 3 chrX 120721438 120721732 -41878198 + AluSg SINE Alu 1 293 -17 843 182 5 71 chrX 120721957 120722127 -41877803 + MIR SINE MIR 23 139 -123 2258 105 36 36 chrX 120722127 120722425 -41877505 + THE1B LTR MaLR 1 301 -63 2332 128 0 0 chrX 120722425 120722737 -41877193 - AluSx SINE Alu 0 312 1 2258 105 36 36 chrX 120722737 120722800 -41877130 + THE1B LTR MaLR 300 362 -2 843 182 5 71 chrX 120722800 120722894 -41877036 + MIR SINE MIR 139 238 -24 2158 130 0 3 chrX 120722902 120723203 -41876727 + AluSc SINE Alu 1 300 -9 2711 55 0 0 chrX 120723203 120723514 -41876416 + AluY SINE Alu 1 311 0 2055 133 3 7 chrX 120723535 120723836 -41876094 + AluJo SINE Alu 1 300 -12 348 255 46 71 chrX 120723846 120723921 -41876009 + Charlie7 DNA MER1_type 546 621 -1991 2100 60 32 49 chrX 120723921 120724241 -41875689 - AluY SINE Alu 0 315 1 348 255 46 71 chrX 120724241 120724360 -41875570 + Charlie7 DNA MER1_type 621 736 -1876 1128 202 117 18 chrX 120724414 120724838 -41875092 + MLT1G3 LTR MaLR 2 554 -36 1990 145 0 30 chrX 120724838 120725142 -41874788 + AluSx SINE Alu 1 295 -17 1128 202 117 18 chrX 120725142 120725181 -41874749 + MLT1G3 LTR MaLR 554 588 -2 556 196 70 38 chrX 120725181 120725281 -41874649 + L1ME3A LINE L1 5994 6102 -68 1701 108 0 5 chrX 120725281 120725504 -41874426 + AluSq SINE Alu 83 304 -9 556 196 70 38 chrX 120725504 120725561 -41874369 + L1ME3A LINE L1 6102 6156 -14 4684 224 70 66 chrX 120725586 120726013 -41873917 + Charlie7 DNA MER1_type 729 1153 -1459 1764 171 0 20 chrX 120726013 120726317 -41873613 - AluJo SINE Alu -14 298 1 4684 224 70 66 chrX 120726317 120726609 -41873321 + Charlie7 DNA MER1_type 1153 1442 -1170 2019 147 3 0 chrX 120726609 120726902 -41873028 - AluSx SINE Alu -17 295 2 4684 224 70 66 chrX 120726902 120726926 -41873004 + Charlie7 DNA MER1_type 1442 1464 -1148 2076 101 7 45 chrX 120726926 120727234 -41872696 - AluSx SINE Alu -16 296 1 4684 224 70 66 chrX 120727234 120727381 -41872549 + Charlie7 DNA MER1_type 1464 1609 -1003 2279 113 0 7 chrX 120727381 120727683 -41872247 - AluSq SINE Alu -13 300 1 4684 224 70 66 chrX 120727683 120728305 -41871625 + Charlie7 DNA MER1_type 1609 2227 -385 2303 101 7 0 chrX 120728305 120728603 -41871327 - AluSx SINE Alu -12 300 1 4684 224 70 66 chrX 120728603 120728654 -41871276 + Charlie7 DNA MER1_type 2227 2276 -336 1996 139 7 0 chrX 120728654 120728942 -41870988 + AluJb SINE Alu 12 301 -11 4684 224 70 66 chrX 120728942 120729247 -41870683 + Charlie7 DNA MER1_type 2276 2609 -3 287 159 16 48 chrX 120729247 120729303 -41870627 + AluJ SINE Alu 88 141 -161 2178 98 35 3 chrX 120729303 120729590 -41870340 + AluSq SINE Alu 1 296 -17 1051 125 0 6 chrX 120729593 120729753 -41870177 + AluJ SINE Alu 137 295 -7 246 261 0 0 chrX 120729795 120729860 -41870070 + MIR SINE MIR 196 260 -2 375 250 105 16 chrX 120729896 120730020 -41869910 + MIR SINE MIR 2 136 -126 600 90 0 72 chrX 120730067 120730109 -41869821 - L1MB8 LINE L1 -6 6172 6129 2025 138 3 0 chrX 120730109 120730399 -41869531 - AluSq SINE Alu -21 292 2 600 90 0 72 chrX 120730399 120730467 -41869463 - L1MB8 LINE L1 -49 6129 6070 3651 146 16 127 chrX 120730467 120732020 -41867910 - pTR5 LTR ERV1 -1 2605 1524 1606 153 109 50 chrX 120732020 120732274 -41867656 - L1MB7 LINE L1 -106 6078 5840 2593 59 0 0 chrX 120732274 120732581 -41867349 - AluY SINE Alu -4 307 1 2192 95 0 60 chrX 120732581 120732755 -41867175 - AluSx SINE Alu -14 298 150 2182 136 0 0 chrX 120732755 120733057 -41866873 - AluSx SINE Alu -9 303 2 2192 95 0 60 chrX 120733057 120733199 -41866731 - AluSx SINE Alu -162 150 1 1606 153 109 50 chrX 120733199 120733330 -41866600 - L1MB7 LINE L1 -343 5841 5676 361 265 65 59 chrX 120733564 120733734 -41866196 + MIR SINE MIR 46 216 -46 2114 117 0 0 chrX 120733971 120734245 -41865685 + AluSx SINE Alu 2 275 -37 270 0 0 0 chrX 120734249 120734279 -41865651 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 983 70 8 0 chrX 120734288 120734417 -41865513 + FLAM_C SINE Alu 2 131 -2 205 303 9 18 chrX 120735037 120735146 -41864784 + (CATA)n Simple_repeat Simple_repeat 3 110 0 2043 134 20 7 chrX 120735264 120735570 -41864360 + AluSx SINE Alu 1 310 -2 2438 64 20 3 chrX 120735975 120736273 -41863657 - AluY SINE Alu -8 303 1 655 227 129 0 chrX 120737737 120737900 -41862030 + MIR SINE MIR 61 244 -18 252 0 0 0 chrX 120739129 120739157 -41860773 + (TCC)n Simple_repeat Simple_repeat 2 29 0 2125 93 19 64 chrX 120741264 120741575 -41858355 - AluSg SINE Alu -13 297 1 2249 120 3 0 chrX 120741582 120741883 -41858047 - AluSx SINE Alu -7 305 4 1905 146 7 3 chrX 120741912 120742199 -41857731 + AluJo SINE Alu 1 288 -24 1726 182 7 19 chrX 120742595 120742902 -41857028 - AluJo SINE Alu -9 303 1 258 32 0 0 chrX 120743047 120743078 -41856852 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2339 82 0 3 chrX 120743080 120743362 -41856568 - AluSx SINE Alu -31 281 1 199 321 120 19 chrX 120744318 120744527 -41855403 - L2 LINE L2 -443 2871 2642 920 142 8 0 chrX 120744611 120744745 -41855185 + FRAM SINE Alu 20 154 -22 458 280 125 0 chrX 120744966 120745134 -41854796 + MIR SINE MIR 45 233 -29 4098 201 87 31 chrX 120745384 120745494 -41854436 + MSTB1-int LTR MaLR 571 673 -978 1870 122 61 0 chrX 120745494 120745757 -41854173 + AluSg SINE Alu 6 284 -26 1778 121 4 8 chrX 120745757 120746006 -41853924 + AluSx SINE Alu 55 302 -10 4098 201 87 31 chrX 120746006 120746603 -41853327 + MSTB1-int LTR MaLR 673 1235 -416 1811 115 4 30 chrX 120746603 120746872 -41853058 + AluJo SINE Alu 45 306 -6 4098 201 87 31 chrX 120746872 120747011 -41852919 + MSTB1-int LTR MaLR 1235 1365 -286 2583 40 7 0 chrX 120747011 120747311 -41852619 - AluY SINE Alu -9 302 1 2297 114 0 0 chrX 120747314 120747613 -41852317 - AluSx SINE Alu -13 299 1 4098 201 87 31 chrX 120747613 120747783 -41852147 + MSTB1-int LTR MaLR 1366 1651 0 2122 153 36 53 chrX 120747783 120747838 -41852092 + MSTB1 LTR MaLR 1 55 -377 2495 60 0 3 chrX 120747838 120748138 -41851792 + AluY SINE Alu 1 299 -12 2122 153 36 53 chrX 120748138 120748272 -41851658 + MSTB1 LTR MaLR 55 190 -242 2324 85 3 3 chrX 120748272 120748565 -41851365 - AluSx SINE Alu -19 293 1 2122 153 36 53 chrX 120748565 120748787 -41851143 + MSTB1 LTR MaLR 190 406 -26 816 172 0 0 chrX 120748864 120748992 -41850938 - FLAM_C SINE Alu -15 128 1 2295 92 0 0 chrX 120748999 120749304 -41850626 - AluSx SINE Alu 0 305 1 268 50 0 25 chrX 120749306 120749346 -41850584 + MSTB1 LTR MaLR 394 432 0 2103 96 6 39 chrX 120749761 120749908 -41850022 - AluSc SINE Alu -7 302 152 4304 80 177 36 chrX 120749908 120750632 -41849298 + LTR12 LTR ERV1 1 826 0 2103 96 6 39 chrX 120750632 120750796 -41849134 - AluSc SINE Alu -157 152 1 1433 75 0 10 chrX 120750796 120750905 -41849025 - L1PA13 LINE L1 -17 6146 6038 1770 143 52 4 chrX 120750905 120751177 -41848753 - AluSx SINE Alu -23 289 5 1433 75 0 10 chrX 120751177 120751267 -41848663 - L1PA13 LINE L1 -125 6038 5949 1538 132 55 0 chrX 120751496 120751715 -41848215 + AluSx SINE Alu 5 235 -77 280 70 23 0 chrX 120751745 120751788 -41848142 - MLT1A1 LTR MaLR 0 457 414 1021 74 0 0 chrX 120751788 120751910 -41848020 + AluY SINE Alu 176 297 -14 1360 169 49 81 chrX 120751911 120752087 -41847843 - MLT1A1 LTR MaLR -32 333 153 2069 92 14 14 chrX 120752087 120752391 -41847539 - AluSg SINE Alu 0 304 1 1360 169 49 81 chrX 120752391 120752510 -41847420 - MLT1A1 LTR MaLR -212 153 47 2340 101 0 0 chrX 120752510 120752806 -41847124 - AluSx SINE Alu -16 296 1 1360 169 49 81 chrX 120752806 120752852 -41847078 - MLT1A1 LTR MaLR -318 47 1 296 299 37 5 chrX 120752862 120753035 -41846895 + L2 LINE L2 1927 2178 -1136 2205 130 0 3 chrX 120753064 120753372 -41846558 - AluJb SINE Alu -1 311 5 506 191 32 126 chrX 120753406 120753652 -41846278 + L2 LINE L2 2848 3070 -202 2189 84 0 7 chrX 120753693 120753966 -41845964 - AluSx SINE Alu -15 297 27 1800 160 4 0 chrX 120753966 120754241 -41845689 + AluJb SINE Alu 23 298 -14 756 265 42 46 chrX 120754372 120754655 -41845275 - L2 LINE L2 -790 2524 2243 2625 65 0 0 chrX 120754675 120754981 -41844949 - AluSg SINE Alu -4 306 1 778 273 13 29 chrX 120755167 120755287 -41844643 + MIR SINE MIR 29 145 -117 2383 92 0 0 chrX 120755287 120755581 -41844349 + AluSg1 SINE Alu 1 294 -15 778 273 13 29 chrX 120755581 120755698 -41844232 + MIR SINE MIR 145 262 0 2383 116 0 0 chrX 120755810 120756121 -41843809 - AluSx SINE Alu -1 311 1 193 325 53 37 chrX 120756133 120756321 -41843609 + L2 LINE L2 2692 2882 -432 181 276 46 35 chrX 120756589 120756676 -41843254 + L2 LINE L2 3177 3264 -49 2231 125 7 0 chrX 120756863 120757168 -41842762 - AluSq SINE Alu -6 307 1 369 261 85 52 chrX 120757242 120757395 -41842535 - MIR3 SINE MIR -35 173 16 1053 235 108 75 chrX 120757409 120757554 -41842376 + MLT1H1 LTR MaLR 1 140 -415 477 167 161 74 chrX 120757554 120757629 -41842301 - MER45A DNA AcHobo -1405 176 109 2309 110 0 3 chrX 120757629 120757928 -41842002 + AluSx SINE Alu 1 298 -14 477 167 161 74 chrX 120757928 120758014 -41841916 - MER45A DNA AcHobo -1472 109 1 1053 235 108 75 chrX 120758014 120758405 -41841525 + MLT1H1 LTR MaLR 140 555 0 2419 99 0 6 chrX 120758578 120758891 -41841039 + AluSx SINE Alu 1 311 -1 270 220 17 0 chrX 120759063 120759122 -41840808 - MER112 DNA MER1_type 0 260 201 315 0 0 0 chrX 120759209 120759244 -41840686 + (TG)n Simple_repeat Simple_repeat 2 36 0 534 261 17 0 chrX 120759258 120759377 -41840553 + L2 LINE L2 3151 3271 -1 850 111 0 14 chrX 120759622 120759766 -41840164 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 28 29 0 0 chrX 120759800 120759835 -41840095 + AT_rich Low_complexity Low_complexity 1 35 0 694 148 0 0 chrX 120759849 120759957 -41839973 - FLAM_C SINE Alu -34 109 2 260 261 113 74 chrX 120759988 120760119 -41839811 - MIR SINE MIR -27 235 92 2320 82 3 7 chrX 120760119 120760433 -41839497 + AluSp SINE Alu 1 313 0 260 261 113 74 chrX 120760433 120760504 -41839426 - MIR SINE MIR -170 92 25 1802 153 13 33 chrX 120760824 120761125 -41838805 - AluJo SINE Alu -17 295 1 445 163 28 57 chrX 120761133 120761268 -41838662 - L1MC3 LINE L1 -1 8041 7677 2281 104 0 3 chrX 120761278 120761566 -41838364 - AluSc SINE Alu -22 287 1 438 278 45 131 chrX 120761566 120761918 -41838012 - L2 LINE L2 -12 3260 2939 2084 134 0 7 chrX 120761922 120762227 -41837703 - AluJb SINE Alu -9 303 1 2246 93 47 10 chrX 120762301 120762602 -41837328 + AluSx SINE Alu 1 312 0 2215 101 0 3 chrX 120762617 120762905 -41837025 + AluSc SINE Alu 7 293 -16 275 122 0 0 chrX 120762912 120762953 -41836977 - LTR23 LTR ERV1 -77 360 320 204 268 0 22 chrX 120763039 120763095 -41836835 - MIR SINE MIR -114 94 41 307 147 200 42 chrX 120763331 120763426 -41836504 - MIR SINE MIR -35 227 118 2254 123 0 0 chrX 120763457 120763758 -41836172 - AluSx SINE Alu -11 301 1 1575 152 95 4 chrX 120764425 120764689 -41835241 - AluJb SINE Alu -24 288 1 2381 95 3 13 chrX 120764799 120765114 -41834816 + AluSx SINE Alu 1 312 0 2226 109 10 0 chrX 120765254 120765548 -41834382 - AluSx SINE Alu -15 297 1 224 234 104 0 chrX 120765876 120765953 -41833977 + L2 LINE L2 3184 3268 -4 766 211 203 0 chrX 120766209 120766460 -41833470 - MER58B DNA MER1_type 0 341 40 1002 76 30 0 chrX 120766462 120766593 -41833337 + AluSq/x SINE Alu 1 135 -177 2381 92 0 22 chrX 120766659 120766976 -41832954 + AluSg SINE Alu 1 310 0 295 139 0 0 chrX 120767029 120767072 -41832858 - MER3 DNA MER1_type -166 43 1 979 112 0 15 chrX 120767781 120767915 -41832015 - AluSg SINE Alu -178 132 1 1713 163 13 37 chrX 120768286 120768586 -41831344 - AluJo SINE Alu -17 295 3 2308 103 10 0 chrX 120768880 120769180 -41830750 + AluSq SINE Alu 1 303 -10 710 150 0 25 chrX 120769187 120769307 -41830623 + AluJb SINE Alu 83 199 -113 1541 195 34 14 chrX 120769611 120769903 -41830027 + AluJo SINE Alu 1 298 -14 2290 129 0 0 chrX 120769903 120770213 -41829717 + AluSx SINE Alu 1 310 -2 273 293 84 71 chrX 120770713 120770938 -41828992 - MIR SINE MIR -6 256 29 26 30 0 0 chrX 120771239 120771272 -41828658 + AT_rich Low_complexity Low_complexity 1 33 0 2169 103 0 7 chrX 120773015 120773325 -41826605 + AluSq SINE Alu 1 308 -5 1317 180 90 37 chrX 120773386 120773709 -41826221 + Charlie4a DNA MER1_type 1 340 -168 2166 113 0 0 chrX 120773711 120774012 -41825918 - AluSx SINE Alu -11 301 1 538 143 0 0 chrX 120774012 120774089 -41825841 - MLT1B LTR MaLR -313 77 1 846 228 4 82 chrX 120774272 120774527 -41825403 - MIR SINE MIR -26 236 2 317 245 43 21 chrX 120774531 120774625 -41825305 - L2 LINE L2 -9 3304 3209 317 237 13 0 chrX 120774627 120774703 -41825227 + L1MD2 LINE L1 6046 6122 -237 2374 74 0 0 chrX 120774704 120775002 -41824928 + AluSx SINE Alu 2 299 -13 1162 123 0 6 chrX 120775002 120775181 -41824749 + AluSg/x SINE Alu 132 309 -1 1017 204 20 0 chrX 120775221 120775422 -41824508 + L1MD2 LINE L1 6153 6357 -2 342 232 80 51 chrX 120775422 120775523 -41824407 - L2 LINE L2 -95 3218 3121 1757 146 17 10 chrX 120775523 120775818 -41824112 + AluJo SINE Alu 1 297 -15 2358 57 7 3 chrX 120775823 120776121 -41823809 + AluSg SINE Alu 1 299 -11 342 232 80 51 chrX 120776121 120776151 -41823779 - L2 LINE L2 -195 3118 3077 2104 108 7 16 chrX 120776329 120776636 -41823294 + AluSx SINE Alu 1 304 -8 748 209 0 0 chrX 120776669 120776798 -41823132 + FLAM_A SINE Alu 3 131 -2 1298 155 10 0 chrX 120776802 120777009 -41822921 - MER2 DNA MER2_type -135 210 2 2204 107 3 0 chrX 120777113 120777421 -41822509 - AluSx SINE Alu 0 312 4 801 231 127 40 chrX 120777485 120777735 -41822195 + L2 LINE L2 2458 2740 -574 1799 164 10 0 chrX 120777735 120778034 -41821896 - AluSx SINE Alu -10 302 1 801 231 127 40 chrX 120778034 120778082 -41821848 + L2 LINE L2 2740 2782 -532 1200 199 0 0 chrX 120778085 120778311 -41821619 + AluJb SINE Alu 85 310 -2 1589 173 113 81 chrX 120778312 120778601 -41821329 + L2 LINE L2 2770 3048 -265 2034 94 0 24 chrX 120778601 120778929 -41821001 + AluSg SINE Alu 1 321 0 1589 173 113 81 chrX 120778929 120778940 -41820990 + L2 LINE L2 3048 3057 -256 1659 145 3 27 chrX 120778940 120779236 -41820694 + AluJb SINE Alu 1 289 -23 1589 173 113 81 chrX 120779236 120779467 -41820463 + L2 LINE L2 3057 3312 -1 1479 178 28 0 chrX 120779657 120779943 -41819987 - AluJb SINE Alu -18 294 1 239 247 82 24 chrX 120779954 120780039 -41819891 - L2 LINE L2 -607 2707 2618 2262 85 3 0 chrX 120780051 120780345 -41819585 - AluSq SINE Alu -18 295 1 1633 172 75 7 chrX 120780346 120780654 -41819276 - MER58B DNA MER1_type -9 332 4 1410 251 108 17 chrX 120780658 120781141 -41818789 + L2 LINE L2 1305 1831 -1483 2185 93 17 0 chrX 120781177 120781477 -41818453 - AluSx SINE Alu -7 305 1 185 0 40 0 chrX 120781479 120781504 -41818426 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1974 112 18 0 chrX 120781504 120781782 -41818148 - AluSx SINE Alu -29 283 1 1261 123 15 10 chrX 120781782 120781973 -41817957 - L1MB7 LINE L1 -166 6018 5824 1116 229 120 15 chrX 120781973 120782240 -41817690 - AluJo SINE Alu -6 296 2 1261 123 15 10 chrX 120782240 120782252 -41817678 - L1MB7 LINE L1 -360 5824 5814 807 189 19 15 chrX 120782272 120782860 -41817070 + CT-rich Low_complexity Low_complexity 1 590 0 1072 171 10 0 chrX 120782864 120783057 -41816873 - AluSg/x SINE Alu -1 309 115 2124 117 0 13 chrX 120783060 120783376 -41816554 - AluSx SINE Alu 0 312 1 510 288 78 30 chrX 120783397 120783668 -41816262 + L2 LINE L2 1977 2260 -1054 319 320 25 0 chrX 120783725 120783847 -41816083 + L2 LINE L2 1891 2015 -1299 1836 145 94 63 chrX 120784068 120784425 -41815505 + MSTA LTR MaLR 1 345 -83 2038 118 0 3 chrX 120784425 120784741 -41815189 - AluSx SINE Alu 0 315 1 2125 109 0 7 chrX 120784746 120785048 -41814882 - AluSg SINE Alu -10 300 1 1836 145 94 63 chrX 120785048 120785086 -41814844 + MSTA LTR MaLR 348 383 -45 2002 109 73 53 chrX 120785086 120785128 -41814802 - THE1B LTR MaLR 0 364 324 2146 118 3 0 chrX 120785128 120785434 -41814496 + AluSx SINE Alu 1 307 -5 2002 109 73 53 chrX 120785434 120785748 -41814182 - THE1B LTR MaLR -40 324 1 1836 145 94 63 chrX 120785748 120785759 -41814171 + MSTA LTR MaLR 383 428 0 7948 13 6 0 chrX 120786109 120787125 -41812805 + L1PA2 LINE L1 5135 6155 0 2133 109 0 3 chrX 120787374 120787687 -41812243 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 120788392 120788415 -41811515 + AT_rich Low_complexity Low_complexity 1 23 0 1354 187 8 8 chrX 120788426 120788694 -41811236 - AluJb SINE Alu -16 296 29 687 159 0 0 chrX 120788694 120788807 -41811123 - AluSq/x SINE Alu -199 114 2 291 341 153 29 chrX 120789064 120789234 -41810696 + L2 LINE L2 3080 3270 -2 1785 176 47 14 chrX 120789620 120789983 -41809947 - THE1C LTR MaLR 0 375 1 7271 119 37 60 chrX 120789993 120790067 -41809863 + HSMAR2 DNA Mariner 2 76 -1226 1908 130 3 3 chrX 120790067 120790359 -41809571 + AluSx SINE Alu 1 292 -20 7271 119 37 60 chrX 120790359 120790909 -41809021 + HSMAR2 DNA Mariner 76 637 -665 492 122 0 0 chrX 120790909 120790983 -41808947 - MADE1 DNA Mariner -3 77 4 7271 119 37 60 chrX 120790983 120791671 -41808259 + HSMAR2 DNA Mariner 637 1285 -17 1890 125 3 20 chrX 120791671 120791968 -41807962 - AluSx SINE Alu -16 296 5 2171 101 0 3 chrX 120791993 120792291 -41807639 + AluSc SINE Alu 1 297 -12 1713 188 0 0 chrX 120792298 120792596 -41807334 + AluJb SINE Alu 1 298 -14 1792 157 3 0 chrX 120792600 120792899 -41807031 + AluSx SINE Alu 1 300 -12 644 291 175 12 chrX 120793023 120793429 -41806501 + L2 LINE L2 1775 2246 -1068 219 364 92 37 chrX 120793430 120793702 -41806228 + L2 LINE L2 1811 2097 -1217 1758 148 101 52 chrX 120793846 120794180 -41805750 + MSTB LTR MaLR 2 361 -65 2277 93 0 6 chrX 120794180 120794492 -41805438 - AluSx SINE Alu -2 310 1 1758 148 101 52 chrX 120794492 120794562 -41805368 + MSTB LTR MaLR 361 426 0 2289 103 0 0 chrX 120795484 120795794 -41804136 - AluSx SINE Alu -2 310 1 1138 234 8 8 chrX 120796155 120796420 -41803510 - AluJb SINE Alu -21 291 27 2029 113 0 0 chrX 120796428 120796710 -41803220 - AluSq SINE Alu -31 282 1 328 306 153 29 chrX 120796962 120797132 -41802798 + L2 LINE L2 3080 3270 -2 1575 197 63 32 chrX 120797500 120797618 -41802312 - THE1C LTR MaLR 0 428 315 1644 141 14 4 chrX 120797618 120797895 -41802035 - AluSx SINE Alu -32 280 1 1575 197 63 32 chrX 120797895 120798197 -41801733 - THE1C LTR MaLR -113 315 1 7581 120 24 65 chrX 120798207 120798613 -41801317 + HSMAR2 DNA Mariner 2 423 -879 2180 113 0 0 chrX 120798613 120798914 -41801016 + AluSg SINE Alu 1 301 -9 7581 120 24 65 chrX 120798914 120798943 -41800987 + HSMAR2 DNA Mariner 423 452 -850 1529 129 71 0 chrX 120798943 120799183 -41800747 + AluSq SINE Alu 1 257 -56 7581 120 24 65 chrX 120799183 120799378 -41800552 + HSMAR2 DNA Mariner 452 653 -649 325 155 84 0 chrX 120799378 120799449 -41800481 - MADE1 DNA Mariner 0 80 4 7581 120 24 65 chrX 120799449 120799682 -41800248 + HSMAR2 DNA Mariner 653 894 -408 2257 91 0 0 chrX 120799682 120799980 -41799950 - AluSg SINE Alu -12 298 1 7581 120 24 65 chrX 120799980 120800456 -41799474 + HSMAR2 DNA Mariner 894 1289 -13 2040 120 0 0 chrX 120800464 120800763 -41799167 - AluSx SINE Alu -3 309 11 1795 125 0 24 chrX 120800792 120801079 -41798851 - AluSx SINE Alu -32 280 1 1713 134 0 31 chrX 120801107 120801397 -41798533 - AluSx SINE Alu -31 281 1 416 235 36 9 chrX 120801402 120801510 -41798420 + AluJ/FLAM SINE Alu 2 75 -227 2000 135 104 20 chrX 120801606 120801999 -41797931 + MSTB LTR MaLR 1 426 0 2179 103 0 7 chrX 120802144 120802454 -41797476 + AluSg SINE Alu 1 308 -2 2039 131 0 0 chrX 120803230 120803536 -41796394 - AluSq SINE Alu -7 306 1 1268 209 65 4 chrX 120803887 120804165 -41795765 - AluJb SINE Alu -7 295 1 2054 121 0 13 chrX 120804176 120804482 -41795448 - AluSx SINE Alu 0 312 11 592 160 0 11 chrX 120804491 120804585 -41795345 - AluJ/FLAM SINE Alu -218 94 2 291 341 153 29 chrX 120804842 120805012 -41794918 + L2 LINE L2 3080 3270 -2 191 313 133 33 chrX 120805191 120805385 -41794545 + L2 LINE L2 1525 1743 -1571 2205 113 0 0 chrX 120805385 120805695 -41794235 - AluSx SINE Alu -2 310 1 191 313 133 33 chrX 120805695 120805711 -41794219 + L2 LINE L2 1743 1756 -1558 1847 142 101 14 chrX 120805717 120806062 -41793868 - THE1C LTR MaLR 0 375 1 7728 109 20 47 chrX 120806073 120806505 -41793425 + HSMAR2 DNA Mariner 3 445 -857 2020 122 0 7 chrX 120806505 120806801 -41793129 + AluSx SINE Alu 1 294 -18 7728 109 20 47 chrX 120806801 120806827 -41793103 + HSMAR2 DNA Mariner 445 470 -832 1994 120 0 3 chrX 120806827 120807128 -41792802 + AluSx SINE Alu 1 300 -12 7728 109 20 47 chrX 120807128 120807293 -41792637 + HSMAR2 DNA Mariner 470 638 -664 462 143 0 0 chrX 120807293 120807370 -41792560 - MADE1 DNA Mariner 0 80 4 7728 109 20 47 chrX 120807370 120807958 -41791972 + HSMAR2 DNA Mariner 638 1182 -120 183 42 0 0 chrX 120807958 120807982 -41791948 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 7728 109 20 47 chrX 120807982 120808037 -41791893 + HSMAR2 DNA Mariner 1182 1237 -65 273 93 93 0 chrX 120808075 120808118 -41791812 - AluSc SINE Alu -15 285 239 1563 88 10 0 chrX 120808118 120808323 -41791607 - AluSc SINE Alu -102 207 1 1852 136 13 16 chrX 120808353 120808662 -41791268 - AluSx SINE Alu -4 308 1 1874 128 0 46 chrX 120808666 120808993 -41790937 - AluSx SINE Alu 0 312 1 1703 191 3 0 chrX 120809018 120809317 -41790613 + AluJb SINE Alu 1 300 -12 2181 108 0 0 chrX 120809352 120809649 -41790281 - AluSq SINE Alu -16 297 1 2120 102 3 0 chrX 120809651 120809945 -41789985 - AluSg SINE Alu -13 297 3 750 269 180 12 chrX 120810043 120810459 -41789471 + L2 LINE L2 1775 2260 -1054 281 263 46 72 chrX 120810514 120810666 -41789264 + L2 LINE L2 1891 2038 -1276 1919 150 104 20 chrX 120810855 120811248 -41788682 + MSTB LTR MaLR 1 426 0 183 100 0 0 chrX 120811370 120811400 -41788530 + (A)n Simple_repeat Simple_repeat 1 30 0 1989 120 13 0 chrX 120811948 120812247 -41787683 - AluSq SINE Alu -10 303 1 1250 216 32 7 chrX 120812604 120812887 -41787043 - AluJb SINE Alu -22 290 1 1977 114 0 30 chrX 120812898 120813196 -41786734 - AluSx SINE Alu -23 289 1 187 292 177 0 chrX 120813731 120813827 -41786103 + L2 LINE L2 3145 3257 -15 1006 160 0 32 chrX 120813952 120814140 -41785790 - AluJb SINE Alu -2 310 129 1984 122 3 0 chrX 120814148 120814434 -41785496 - AluSx SINE Alu -25 287 1 395 279 39 0 chrX 120814483 120814587 -41785343 + MSTB LTR MaLR 207 314 -112 1407 210 7 3 chrX 120815872 120816163 -41783767 - AluJb SINE Alu -20 292 1 1129 206 100 66 chrX 120816163 120816335 -41783595 + L1MC5 LINE L1 7338 7503 -458 1611 162 47 7 chrX 120816335 120816632 -41783298 + AluJo SINE Alu 1 309 -3 1129 206 100 66 chrX 120816632 120816701 -41783229 + L1MC5 LINE L1 7503 7568 -393 2213 92 0 0 chrX 120816701 120816993 -41782937 + AluSx SINE Alu 1 292 -20 1129 206 100 66 chrX 120816993 120817279 -41782651 + L1MC5 LINE L1 7568 7884 -77 2496 47 0 0 chrX 120817281 120817578 -41782352 - AluY SINE Alu -14 297 1 2029 126 0 3 chrX 120817580 120817873 -41782057 - AluSx SINE Alu -20 292 1 2361 76 0 3 chrX 120817962 120818264 -41781666 + AluY SINE Alu 1 301 -10 1669 166 3 17 chrX 120819410 120819705 -41780225 - AluJb SINE Alu -21 291 1 270 183 17 43 chrX 120821764 120821879 -41778051 + T-rich Low_complexity Low_complexity 5 116 0 422 273 108 0 chrX 120822679 120822818 -41777112 + L1ME LINE L1 5517 5670 -451 2015 90 14 0 chrX 120822930 120823208 -41776722 + AluSx SINE Alu 1 282 -30 429 20 0 0 chrX 120823209 120823259 -41776671 + (CA)n Simple_repeat Simple_repeat 1 50 0 186 71 0 0 chrX 120823286 120823314 -41776616 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 329 211 28 0 chrX 120823322 120823393 -41776537 - L1ME LINE L1 -463 5658 5586 364 270 151 0 chrX 120823654 120823780 -41776150 - MIR SINE MIR -78 184 40 2127 98 0 0 chrX 120824671 120824979 -41774951 - AluSq SINE Alu 0 308 1 2348 86 3 0 chrX 120825228 120825531 -41774399 - AluSp SINE Alu -9 304 1 1284 139 20 68 chrX 120826192 120826486 -41773444 + L1MB8 LINE L1 5894 6173 -5 260 180 135 11 chrX 120826520 120826609 -41773321 + L1MA9 LINE L1 6173 6272 -40 2199 113 0 0 chrX 120826680 120826989 -41772941 + AluSx SINE Alu 1 309 -3 1084 129 79 0 chrX 120826993 120827171 -41772759 + AluSc SINE Alu 118 309 0 291 164 15 0 chrX 120827178 120827245 -41772685 + L1MA9 LINE L1 6245 6312 0 373 27 9 0 chrX 120827312 120827366 -41772564 + L1MB1 LINE L1 6127 6167 -1 5097 135 32 29 chrX 120827381 120827877 -41772053 + L1MB2 LINE L1 5118 5611 -560 1536 117 0 17 chrX 120827877 120828107 -41771823 + AluSq SINE Alu 85 310 -3 1974 128 13 3 chrX 120828112 120828417 -41771513 + AluSx SINE Alu 1 308 -4 5097 135 32 29 chrX 120828417 120828625 -41771305 + L1MB2 LINE L1 5614 5820 -351 2064 123 3 10 chrX 120828625 120828934 -41770996 + AluSq SINE Alu 1 307 -6 5097 135 32 29 chrX 120828934 120829269 -41770661 + L1MB2 LINE L1 5820 6169 -2 1869 137 47 20 chrX 120829272 120829615 -41770315 + L1MB7 LINE L1 5815 6166 -18 2028 128 6 6 chrX 120829840 120830188 -41769742 + AluSx SINE Alu 1 348 0 240 142 0 67 chrX 120830521 120830581 -41769349 + FRAM SINE Alu 1 4294967291 -2 301 128 21 0 chrX 120830589 120830636 -41769294 + L1 LINE L1 4872 4919 -1227 1801 136 23 30 chrX 120830636 120830937 -41768993 + AluJo SINE Alu 1 299 -13 2147 87 0 20 chrX 120831368 120831668 -41768262 - AluSc SINE Alu -15 294 1 993 126 13 6 chrX 120834206 120834365 -41765565 + FRAM SINE Alu 1 156 -20 554 185 32 11 chrX 120834565 120834722 -41765208 + L1ME1 LINE L1 5708 5969 -197 1020 90 0 0 chrX 120834723 120834856 -41765074 + AluSq/x SINE Alu 1 133 -180 2038 105 3 0 chrX 120834859 120835145 -41764785 + AluSx SINE Alu 1 287 -25 921 189 53 80 chrX 120835520 120835645 -41764285 + L2 LINE L2 2120 2247 -1067 2179 91 3 7 chrX 120835645 120835954 -41763976 + AluSx SINE Alu 1 308 -4 921 189 53 80 chrX 120835954 120836092 -41763838 + L2 LINE L2 2247 2376 -938 590 165 23 3 chrX 120836097 120836219 -41763711 - MLT1D LTR MaLR 0 505 405 915 142 61 71 chrX 120836257 120836469 -41763461 - MLT1D LTR MaLR -94 411 202 1036 147 0 6 chrX 120836495 120836665 -41763265 - AluJo SINE Alu -77 235 67 751 233 42 16 chrX 120836668 120836861 -41763069 - MLT1D LTR MaLR -307 198 1 814 213 37 41 chrX 120836885 120837216 -41762714 - L1ME3A LINE L1 -3 6163 5866 1487 81 0 54 chrX 120837227 120837449 -41762481 - AluSg1 SINE Alu -10 300 91 3194 99 63 61 chrX 120837449 120838003 -41761927 + LTR10A LTR ERV1 1 555 -54 772 53 0 0 chrX 120838015 120838110 -41761820 - AluSg1 SINE Alu -214 95 1 353 244 37 0 chrX 120838116 120838198 -41761732 - L1ME3A LINE L1 -326 5844 5760 1231 231 148 1 chrX 120838201 120838531 -41761399 - L1ME3A LINE L1 -445 5725 5354 1771 131 11 0 chrX 120838802 120839092 -41760838 + AluJb SINE Alu 14 306 0 246 306 35 88 chrX 120839606 120839675 -41760255 + L3b LINE CR1 1263 1334 -249 2090 84 25 3 chrX 120839675 120839959 -41759971 + AluSx SINE Alu 1 290 -22 246 306 35 88 chrX 120839959 120840059 -41759871 + L3b LINE CR1 1334 1423 -160 1843 148 27 30 chrX 120840095 120840432 -41759498 - MER46B DNA MER2_type 0 236 26 1971 97 25 7 chrX 120840458 120840760 -41759170 - AluSx SINE Alu 0 307 1 582 275 88 16 chrX 120840954 120841147 -41758783 - MIR SINE MIR 0 262 56 195 42 0 0 chrX 120841184 120841208 -41758722 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2203 100 0 3 chrX 120841415 120841714 -41758216 + AluSg SINE Alu 1 298 -12 2181 85 0 14 chrX 120841714 120842007 -41757923 + AluSc SINE Alu 1 289 -20 1347 96 0 0 chrX 120842007 120842185 -41757745 + AluSg/x SINE Alu 135 312 0 4219 173 23 47 chrX 120842224 120843060 -41756870 + MER21B LTR ERV1 48 863 0 2703 194 12 55 chrX 120843067 120843756 -41756174 + L1M4 LINE L1 3832 4490 -1656 2272 94 0 0 chrX 120843759 120844066 -41755864 + AluSx SINE Alu 1 307 -5 930 168 0 0 chrX 120844066 120844215 -41755715 + AluJo/FRAM SINE Alu 134 282 -30 2801 130 68 65 chrX 120844242 120844561 -41755369 + L1MB5 LINE L1 5593 5916 -258 2355 90 0 0 chrX 120844561 120844871 -41755059 + AluSg SINE Alu 1 310 0 2801 130 68 65 chrX 120844871 120845121 -41754809 + L1MB5 LINE L1 5916 6164 -10 1520 157 0 69 chrX 120845154 120845472 -41754458 + AluJo SINE Alu 1 296 -16 1307 227 98 16 chrX 120845702 120845953 -41753977 + L2 LINE L2 2915 3207 -106 1715 145 13 23 chrX 120845953 120846257 -41753673 - AluJo SINE Alu -7 305 5 1307 227 98 16 chrX 120846257 120846371 -41753559 + L2 LINE L2 3207 3310 -3 559 279 128 74 chrX 120846371 120846550 -41753380 + L2 LINE L2 2565 2733 -539 2111 84 0 30 chrX 120846550 120846849 -41753081 - AluSg SINE Alu -20 290 1 2230 86 0 7 chrX 120846857 120847161 -41752769 - AluSx SINE Alu -10 302 1 559 279 128 74 chrX 120847161 120847462 -41752468 + L2 LINE L2 2739 3090 -182 2140 125 0 3 chrX 120847775 120848087 -41751843 + AluSx SINE Alu 1 311 -1 799 172 0 8 chrX 120848356 120848490 -41751440 - FLAM_C SINE Alu 0 133 1 1888 135 3 16 chrX 120848574 120848885 -41751045 - AluJb SINE Alu -5 307 1 866 230 42 14 chrX 120848963 120849176 -41750754 + AluJo SINE Alu 2 220 -92 852 130 0 0 chrX 120849179 120849302 -41750628 + AluSg/x SINE Alu 171 293 -17 520 202 0 78 chrX 120849314 120849423 -41750507 + L2 LINE L2 3195 3294 -19 2333 87 0 0 chrX 120849423 120849721 -41750209 + AluSg SINE Alu 1 298 -12 520 202 0 78 chrX 120849721 120849740 -41750190 + L2 LINE L2 3294 3313 0 183 42 0 0 chrX 120849915 120849939 -41749991 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 271 250 0 0 chrX 120850067 120850115 -41749815 - L2 LINE L2 -18 3295 3248 360 172 0 0 chrX 120850291 120850349 -41749581 - Charlie5 DNA MER1_type -2550 62 5 2073 86 0 42 chrX 120850417 120850730 -41749200 + AluSc SINE Alu 1 300 -9 21 36 0 0 chrX 120852434 120852462 -41747468 + GC_rich Low_complexity Low_complexity 1 28 0 1283 96 82 36 chrX 120852922 120852964 -41746966 - AluSx SINE Alu -82 230 191 2448 59 3 0 chrX 120852964 120853271 -41746659 + AluSp SINE Alu 1 308 -5 1283 96 82 36 chrX 120853271 120853448 -41746482 - AluSx SINE Alu -121 191 1 24 0 0 0 chrX 120853674 120853698 -41746232 + AT_rich Low_complexity Low_complexity 1 24 0 346 207 86 35 chrX 120854096 120854212 -41745718 - L1MC/D LINE L1 -2372 5436 5315 236 215 115 37 chrX 120854251 120854442 -41745488 - L1MC/D LINE L1 -841 5305 5100 600 193 35 9 chrX 120854498 120854612 -41745318 - FLAM_A SINE Alu -16 117 1 968 119 0 0 chrX 120854786 120854929 -41745001 + FRAM SINE Alu 24 166 -10 375 167 15 0 chrX 120855097 120855163 -41744767 - MER116 DNA Mariner -13 67 1 1979 128 0 22 chrX 120855173 120855492 -41744438 - AluSx SINE Alu 0 312 1 270 194 144 108 chrX 120855577 120855716 -41744214 - MIR SINE MIR -70 192 49 189 196 118 0 chrX 120855756 120855807 -41744123 + MER5A DNA MER1_type 7 63 -126 2089 90 45 0 chrX 120855946 120856236 -41743694 - AluSg SINE Alu -5 305 3 552 215 70 64 chrX 120856310 120856482 -41743448 + MIR SINE MIR 6 178 -84 2021 131 0 3 chrX 120856551 120856849 -41743081 + AluSx SINE Alu 1 297 -15 2082 117 0 0 chrX 120857507 120857805 -41742125 - AluSg SINE Alu -12 298 1 1012 98 0 0 chrX 120857807 120857940 -41741990 - AluSq/x SINE Alu -179 133 1 804 94 0 47 chrX 120858118 120858245 -41741685 + AluSg/x SINE Alu 181 301 -9 1932 123 26 3 chrX 120858815 120859117 -41740813 + AluSp SINE Alu 1 309 -4 219 114 0 0 chrX 120859490 120859525 -41740405 + (T)n Simple_repeat Simple_repeat 1 35 0 2232 96 0 3 chrX 120859799 120860102 -41739828 - AluSq SINE Alu -10 303 2 1935 140 10 10 chrX 120860205 120860513 -41739417 - AluJo SINE Alu -4 308 1 292 191 63 32 chrX 120860764 120860827 -41739103 - MIR SINE MIR -113 95 31 205 304 0 0 chrX 120860852 120860898 -41739032 - L2 LINE L2 -9 3263 3218 871 121 8 8 chrX 120860922 120861054 -41738876 + AluSq/x SINE Alu 1 132 -181 273 262 122 72 chrX 120861075 120861525 -41738405 - L2 LINE L2 -87 3185 2713 924 181 41 50 chrX 120861550 120861771 -41738159 + MER20 DNA MER1_type 1 219 0 751 172 0 39 chrX 120861833 120861961 -41737969 + FLAM_C SINE Alu 3 125 -18 2030 125 0 13 chrX 120861973 120862107 -41737823 + AluSx SINE Alu 3 137 -175 2109 115 0 3 chrX 120862107 120862420 -41737510 + AluSx SINE Alu 1 312 0 2030 125 0 13 chrX 120862420 120862590 -41737340 + AluSx SINE Alu 137 303 -9 2086 120 3 3 chrX 120862776 120863084 -41736846 - AluSq SINE Alu -5 308 1 307 349 13 33 chrX 120863206 120863358 -41736572 + MIR SINE MIR 64 212 -50 1959 111 7 36 chrX 120864059 120864365 -41735565 - AluSx SINE Alu -15 297 1 2334 81 3 0 chrX 120864960 120865258 -41734672 + AluSp SINE Alu 1 299 -14 4215 35 0 0 chrX 120865601 120866086 -41733844 + L1PA5 LINE L1 5655 6139 -15 21 0 0 0 chrX 120866086 120866107 -41733823 + AT_rich Low_complexity Low_complexity 1 21 0 3123 113 24 143 chrX 120866402 120867122 -41732808 + MER51A LTR ERV1 1 634 0 201 356 0 14 chrX 120867200 120867273 -41732657 + L2 LINE L2 3115 3186 -86 2258 95 0 3 chrX 120867678 120867984 -41731946 + AluSx SINE Alu 1 305 -7 2226 95 0 0 chrX 120868010 120868306 -41731624 + AluSx SINE Alu 1 296 -16 1013 100 13 0 chrX 120868559 120868709 -41731221 - AluJb SINE Alu -34 278 127 1670 148 30 0 chrX 120869331 120869595 -41730335 + AluJb SINE Alu 11 282 -30 1136 171 0 5 chrX 120869654 120869853 -41730077 + AluJo SINE Alu 1 198 -114 2220 97 0 3 chrX 120869883 120870214 -41729716 + AluSx SINE Alu 1 312 0 2076 99 3 0 chrX 120870598 120870890 -41729040 - AluSq SINE Alu -20 293 1 6607 141 219 20 chrX 120871045 120872458 -41727472 + pTR5 LTR ERV1 741 2433 -5 383 296 84 0 chrX 120872493 120872635 -41727295 - MIR SINE MIR -5 257 104 1594 225 61 28 chrX 120872726 120873122 -41726808 + LTR2 LTR ERV1 41 449 0 289 222 0 130 chrX 120873122 120873213 -41726717 - MIR SINE MIR -102 106 41 2128 119 0 0 chrX 120873213 120873516 -41726414 - AluSq SINE Alu -10 303 1 289 222 0 130 chrX 120873516 120873551 -41726379 - MIR SINE MIR -167 41 3 1990 107 28 0 chrX 120873736 120874025 -41725905 - AluSq SINE Alu -16 297 1 1445 194 36 16 chrX 120874070 120874374 -41725556 + AluJb SINE Alu 2 311 -1 646 95 0 0 chrX 120874379 120874463 -41725467 + AluSq SINE Alu 2 85 -227 1477 65 0 0 chrX 120874463 120874649 -41725281 + AluSq SINE Alu 128 313 0 210 71 0 0 chrX 120874654 120874682 -41725248 + (GA)n Simple_repeat Simple_repeat 2 29 0 567 268 6 13 chrX 120874684 120874841 -41725089 - MIR SINE MIR -5 257 102 2802 75 64 98 chrX 120874912 120875223 -41724707 + MER4C LTR ERV1 1 321 -144 2146 99 0 0 chrX 120875223 120875546 -41724384 - AluSq SINE Alu 0 323 1 2802 75 64 98 chrX 120875546 120875576 -41724354 + MER4C LTR ERV1 321 350 -115 2063 116 0 0 chrX 120875576 120875870 -41724060 + AluSq SINE Alu 1 294 -19 2802 75 64 98 chrX 120875870 120875886 -41724044 + MER4C LTR ERV1 350 365 -100 1720 162 7 3 chrX 120875886 120876183 -41723747 + AluJo SINE Alu 1 298 -14 2802 75 64 98 chrX 120876183 120876303 -41723627 + MER4C LTR ERV1 365 465 0 535 229 105 13 chrX 120876387 120876540 -41723390 + MIR SINE MIR 83 249 -13 646 77 0 19 chrX 120877030 120877134 -41722796 + (GGGGA)n Simple_repeat Simple_repeat 5 106 0 2283 94 3 0 chrX 120877429 120877738 -41722192 - AluSx SINE Alu -2 310 1 2267 103 0 0 chrX 120877776 120878087 -41721843 - AluY SINE Alu 0 311 1 934 195 40 49 chrX 120878430 120878479 -41721451 + AluJo SINE Alu 84 132 -180 1631 123 3 99 chrX 120878479 120878803 -41721127 + AluY SINE Alu 1 293 -18 934 195 40 49 chrX 120878803 120878979 -41720951 + AluJo SINE Alu 132 307 -5 2160 89 0 20 chrX 120879140 120879442 -41720488 + AluSq SINE Alu 3 298 -15 2330 84 0 3 chrX 120879515 120879825 -41720105 + AluSg1 SINE Alu 1 309 0 185 397 0 0 chrX 120879874 120879942 -41719988 + MIR SINE MIR 8 75 -187 553 234 28 7 chrX 120879975 120880116 -41719814 - LTR33 LTR ERVL -8 513 370 379 229 115 33 chrX 120880283 120880405 -41719525 - LTR33 LTR ERVL -389 132 1 1906 100 13 33 chrX 120880565 120880725 -41719205 - AluSx SINE Alu -17 295 142 2261 91 0 0 chrX 120880725 120881021 -41718909 - AluSp SINE Alu -17 296 1 1906 100 13 33 chrX 120881021 120881161 -41718769 - AluSx SINE Alu -170 142 1 1753 166 0 13 chrX 120881164 120881465 -41718465 - AluJb SINE Alu -15 297 1 392 299 91 23 chrX 120881656 120881964 -41717966 + L1M4 LINE L1 3901 4229 -1917 2234 98 0 3 chrX 120882051 120882348 -41717582 + AluSx SINE Alu 1 296 -16 2023 67 3 35 chrX 120882361 120882644 -41717286 + AluSp SINE Alu 6 279 -34 239 0 32 0 chrX 120882647 120882678 -41717252 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2045 87 0 45 chrX 120882693 120883002 -41716928 - AluSg SINE Alu -15 295 1 623 215 0 0 chrX 120883044 120883151 -41716779 - FLAM_A SINE Alu -32 110 4 2389 68 3 0 chrX 120883311 120883619 -41716311 - AluSq SINE Alu -4 309 1 1791 139 27 7 chrX 120884572 120884866 -41715064 - AluJo SINE Alu -12 300 1 1772 132 7 58 chrX 120885094 120885231 -41714699 + AluJb SINE Alu 1 144 -168 2123 94 0 7 chrX 120885231 120885519 -41714411 + AluSg SINE Alu 1 286 -24 1772 132 7 58 chrX 120885519 120885691 -41714239 + AluJb SINE Alu 144 294 -18 1274 216 55 51 chrX 120886114 120886654 -41713276 + L2 LINE L2 2753 3311 -2 185 143 0 0 chrX 120886718 120886746 -41713184 + MIR SINE MIR 156 183 -79 2346 71 3 7 chrX 120886851 120887161 -41712769 - AluSc SINE Alu 0 309 1 2102 107 0 32 chrX 120887162 120887472 -41712458 - AluSq SINE Alu -13 300 1 455 231 41 8 chrX 120887567 120887688 -41712242 - MIR SINE MIR -12 250 126 2072 120 0 3 chrX 120887758 120888059 -41711871 - AluSx SINE Alu -12 300 1 1707 135 0 4 chrX 120888080 120888363 -41711567 - AluJo SINE Alu 0 306 25 2232 83 10 7 chrX 120888632 120888934 -41710996 + AluSx SINE Alu 1 303 -9 417 261 122 33 chrX 120889584 120889764 -41710166 + MIR3 SINE MIR 10 205 -3 1979 92 0 127 chrX 120889833 120890179 -41709751 + AluSx SINE Alu 1 302 0 1984 90 65 0 chrX 120890249 120890526 -41709404 + AluSx SINE Alu 1 295 -17 1670 130 0 23 chrX 120890539 120890800 -41709130 + AluJb SINE Alu 36 290 -22 839 164 240 18 chrX 120891157 120891291 -41708639 + ORSL DNA AcHobo 1 104 -171 2230 87 3 0 chrX 120891291 120891590 -41708340 - AluSp SINE Alu -13 300 1 839 164 240 18 chrX 120891590 120891680 -41708250 + ORSL DNA AcHobo 104 275 0 2178 111 0 3 chrX 120891699 120892005 -41707925 + AluSx SINE Alu 1 305 -7 824 131 131 0 chrX 120892335 120892480 -41707450 - FRAM SINE Alu -12 164 1 2296 75 0 20 chrX 120892559 120892865 -41707065 - AluSq SINE Alu -13 300 1 333 368 53 21 chrX 120892865 120893150 -41706780 - L2 LINE L2 -565 2749 2456 824 187 39 0 chrX 120893163 120893318 -41706612 - AluSp SINE Alu -16 297 137 346 281 0 12 chrX 120893360 120893442 -41706488 + MER2 DNA MER2_type 1 81 -264 812 130 0 46 chrX 120893636 120893752 -41706178 + FLAM_C SINE Alu 3 109 -203 279 0 0 0 chrX 120893752 120893783 -41706147 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 812 130 0 46 chrX 120893783 120893817 -41706113 + FLAM_C SINE Alu 109 143 -169 2047 111 0 0 chrX 120894123 120894402 -41705528 + AluSx SINE Alu 2 280 -32 297 0 0 0 chrX 120894402 120894435 -41705495 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 2188 103 0 10 chrX 120894581 120894883 -41705047 + AluSx SINE Alu 1 299 -13 2068 129 0 7 chrX 120894941 120895251 -41704679 - AluJo SINE Alu -4 308 1 2888 208 120 46 chrX 120895552 120896140 -41703790 + L2 LINE L2 1875 2418 -896 2235 95 0 0 chrX 120896140 120896434 -41703496 - AluSq SINE Alu -19 294 1 2888 208 120 46 chrX 120896434 120896613 -41703317 + L2 LINE L2 2418 2582 -732 854 152 0 0 chrX 120896613 120896745 -41703185 - FLAM_C SINE Alu 0 133 2 2888 208 120 46 chrX 120896745 120896798 -41703132 + L2 LINE L2 2582 2757 -557 833 194 10 5 chrX 120896801 120897007 -41702923 - AluJb SINE Alu -11 301 2 588 54 32 11 chrX 120897044 120897137 -41702793 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 1699 130 7 38 chrX 120897137 120897429 -41702501 - AluJo SINE Alu -29 283 1 2260 97 0 6 chrX 120897454 120897765 -41702165 + AluSg SINE Alu 1 309 -1 409 237 142 77 chrX 120897799 120897824 -41702106 - MER5A DNA MER1_type -1 188 166 1968 112 3 18 chrX 120897824 120897960 -41701970 + AluSx SINE Alu 1 137 -171 2085 101 30 0 chrX 120897960 120898258 -41701672 + AluSp SINE Alu 1 307 -6 1968 112 3 18 chrX 120898258 120898433 -41701497 + AluSx SINE Alu 137 308 0 409 237 142 77 chrX 120898433 120898575 -41701355 - MER5A DNA MER1_type -23 166 9 952 210 323 20 chrX 120898595 120898854 -41701076 + L2 LINE L2 2804 2983 -330 1952 128 0 0 chrX 120898854 120899160 -41700770 - AluSx SINE Alu 0 306 1 952 210 323 20 chrX 120899160 120899288 -41700642 + L2 LINE L2 2983 3311 -2 212 262 214 29 chrX 120899866 120899969 -41699961 - MIR SINE MIR -46 216 95 2029 117 0 10 chrX 120900192 120900491 -41699439 + AluSx SINE Alu 1 296 -16 2166 99 0 3 chrX 120902466 120902770 -41697160 - AluY SINE Alu -8 303 1 1913 143 3 0 chrX 120903074 120903374 -41696556 + AluSx SINE Alu 1 301 -11 2056 136 0 0 chrX 120903557 120903859 -41696071 + AluSx SINE Alu 1 302 -10 2219 96 3 0 chrX 120904301 120904594 -41695336 + AluSp SINE Alu 1 294 -19 2345 61 3 3 chrX 120905024 120905319 -41694611 - AluSq SINE Alu -18 295 1 2117 105 3 0 chrX 120905319 120905614 -41694316 - AluSx SINE Alu -16 296 1 1976 118 49 0 chrX 120906189 120906476 -41693454 - AluSx SINE Alu -11 301 1 2785 12 0 6 chrX 120906564 120906884 -41693046 - AluYb8 SINE Alu 0 318 1 2080 121 0 7 chrX 120906889 120907195 -41692735 - AluSx SINE Alu -8 304 1 2269 107 0 0 chrX 120907407 120907715 -41692215 + AluSq SINE Alu 1 308 -5 740 91 0 0 chrX 120907769 120907868 -41692062 - AluSg/x SINE Alu -37 273 175 934 269 54 31 chrX 120907873 120907971 -41691959 - L1M4 LINE L1 -1233 4913 4819 2266 99 0 0 chrX 120907971 120908273 -41691657 - AluSq SINE Alu -11 302 1 934 269 54 31 chrX 120908273 120908597 -41691333 - L1M4 LINE L1 -1327 4819 4481 391 248 30 30 chrX 120908604 120908737 -41691193 - L1M4 LINE L1 -1440 4706 4574 345 285 125 7 chrX 120908740 120908884 -41691046 - L1M4 LINE L1 -1672 4474 4314 695 258 37 26 chrX 120908906 120909177 -41690753 - L1M4 LINE L1 -1665 4481 4208 2125 103 10 0 chrX 120909199 120909489 -41690441 - AluSq SINE Alu -20 293 1 1861 128 21 0 chrX 120909542 120909824 -41690106 - AluSx SINE Alu -24 288 1 242 221 65 0 chrX 120909824 120909894 -41690036 - L1M4 LINE L1 -1955 4191 4114 222 37 0 0 chrX 120910142 120910169 -41689761 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2013 117 3 0 chrX 120911166 120911484 -41688446 + AluSx SINE Alu 2 320 0 1958 108 4 4 chrX 120911487 120911764 -41688166 + AluSq SINE Alu 1 277 -36 422 154 0 0 chrX 120911765 120911843 -41688087 + Alu SINE Alu 234 311 0 2188 96 0 43 chrX 120911850 120912174 -41687756 + AluSg SINE Alu 1 310 0 1202 152 0 5 chrX 120913050 120913247 -41686683 + AluJo SINE Alu 87 282 -30 1700 149 3 26 chrX 120913322 120913624 -41686306 + AluJb SINE Alu 1 295 -17 1710 179 101 52 chrX 120913701 120914197 -41685733 + L1MC5 LINE L1 6892 7411 -550 909 102 7 36 chrX 120914309 120914446 -41685484 - FLAM_C SINE Alu 0 133 1 845 55 0 0 chrX 120914486 120914596 -41685334 + AluY SINE Alu 199 308 -3 475 229 168 11 chrX 120914598 120914777 -41685153 + L1MC5 LINE L1 7705 7911 -50 2152 107 13 7 chrX 120914779 120915089 -41684841 + AluSx SINE Alu 1 312 0 279 266 101 30 chrX 120915356 120915653 -41684277 + L1MC5 LINE L1 7608 7925 -36 228 360 61 9 chrX 120915672 120915786 -41684144 - L2 LINE L2 -72 3200 3081 328 248 55 9 chrX 120916129 120916238 -41683692 + L1MC5 LINE L1 7623 7736 -225 232 280 246 0 chrX 120916506 120916624 -41683306 - MER91A DNA MER1_type -32 164 18 618 218 183 40 chrX 120916633 120916835 -41683095 + MIR SINE MIR 32 262 0 277 291 186 49 chrX 120917629 120917914 -41682016 + L3b LINE CR1 1129 1452 -131 2394 93 0 0 chrX 120917956 120918266 -41681664 + AluSg SINE Alu 1 310 0 834 118 39 0 chrX 120918327 120918454 -41681476 - FLAM_C SINE Alu -1 132 1 2355 58 0 3 chrX 120918728 120919020 -41680910 + AluSg SINE Alu 1 291 -19 25 31 0 0 chrX 120919318 120919350 -41680580 + AT_rich Low_complexity Low_complexity 1 32 0 2016 107 44 0 chrX 120919904 120920202 -41679728 - AluSx SINE Alu -1 311 1 737 150 0 86 chrX 120920213 120920246 -41679684 - FLAM_C SINE Alu -179 133 99 2201 96 0 0 chrX 120920246 120920539 -41679391 + AluSx SINE Alu 2 294 -18 737 150 0 86 chrX 120920539 120920645 -41679285 - FLAM_C SINE Alu -213 99 6 2116 109 0 25 chrX 120920682 120921002 -41678928 + AluSx SINE Alu 1 312 0 2008 109 0 0 chrX 120921515 120921789 -41678141 + AluSx SINE Alu 30 303 -9 661 256 74 26 chrX 120921991 120922221 -41677709 - MIR SINE MIR -2 260 20 1768 176 0 10 chrX 120922245 120922557 -41677373 - AluJb SINE Alu -3 309 1 181 226 81 32 chrX 120922626 120922688 -41677242 - MIR SINE MIR -14 248 184 1852 139 0 7 chrX 120922819 120923121 -41676809 + AluJb SINE Alu 1 300 -12 295 303 112 59 chrX 120923401 120923553 -41676377 - L2 LINE L2 -1 3271 3112 258 197 30 15 chrX 120924650 120924716 -41675214 + (TATG)n Simple_repeat Simple_repeat 4 70 0 1580 128 13 73 chrX 120924934 120925247 -41674683 - AluSx SINE Alu -18 294 1 1182 134 11 11 chrX 120925273 120925460 -41674470 - AluSg/x SINE Alu -5 305 119 935 156 131 39 chrX 120925463 120925587 -41674343 - L1MA4A LINE L1 -24 6279 6168 2197 97 0 20 chrX 120925587 120925885 -41674045 + AluSx SINE Alu 1 292 -20 935 156 131 39 chrX 120925885 120925934 -41673996 - L1MA4A LINE L1 -135 6168 6125 1603 163 45 14 chrX 120925934 120926223 -41673707 + AluJb SINE Alu 1 298 -14 935 156 131 39 chrX 120926223 120926331 -41673599 - L1MA4A LINE L1 -178 6125 5971 2366 98 0 0 chrX 120926429 120926734 -41673196 - AluSc SINE Alu -3 306 2 1581 180 41 3 chrX 120926755 120927050 -41672880 - AluJb SINE Alu -6 306 1 2016 140 0 0 chrX 120927103 120927395 -41672535 - AluSx SINE Alu -20 292 1 1762 95 0 0 chrX 120928036 120928257 -41671673 - AluSg SINE Alu -89 221 1 1959 138 0 7 chrX 120928271 120928567 -41671363 - AluSx SINE Alu -18 294 1 220 277 0 0 chrX 120929787 120929834 -41670096 + polypyrimidine Low_complexity Low_complexity 2 48 0 2333 124 9 95 chrX 120930043 120930190 -41669740 - L1MC2 LINE L1 -9 6753 6595 189 74 0 0 chrX 120930190 120930217 -41669713 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1959 112 0 54 chrX 120930220 120930516 -41669414 - AluSq SINE Alu -31 282 3 2333 124 9 95 chrX 120930516 120930815 -41669115 - L1MC2 LINE L1 -169 6593 6342 381 93 0 0 chrX 120930815 120930869 -41669061 - MLT2A2 LTR ERVL -1 443 390 543 135 15 30 chrX 120930877 120931010 -41668920 + (TA)n Simple_repeat Simple_repeat 2 132 0 378 0 0 0 chrX 120931061 120931103 -41668827 + (TA)n Simple_repeat Simple_repeat 2 43 0 2834 98 21 8 chrX 120931103 120931492 -41668438 - MLT2A2 LTR ERVL -59 394 1 7404 195 75 107 chrX 120931507 120932188 -41667742 - L1MC2 LINE L1 -450 6312 5611 2162 110 0 3 chrX 120932188 120932480 -41667450 - AluSg SINE Alu -19 291 1 7404 195 75 107 chrX 120932480 120932661 -41667269 - L1MC2 LINE L1 -1151 5611 5426 1848 154 3 7 chrX 120932661 120932959 -41666971 - AluJb SINE Alu -15 297 1 7404 195 75 107 chrX 120932959 120933868 -41666062 - L1MC2 LINE L1 -1336 5426 4489 189 0 0 0 chrX 120933868 120933889 -41666041 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 7404 195 75 107 chrX 120933889 120934623 -41665307 - L1MC2 LINE L1 -2273 4489 3733 2876 51 21 0 chrX 120934623 120934959 -41664971 + LTR14A LTR ERVK 2 344 0 7404 195 75 107 chrX 120934959 120935106 -41664824 - L1MC2 LINE L1 -3029 3733 3583 845 198 6 42 chrX 120935106 120935273 -41664657 + FRAM SINE Alu 2 162 -14 7404 195 75 107 chrX 120935273 120935508 -41664422 - L1MC2 LINE L1 -3179 3583 3342 2136 99 7 0 chrX 120935508 120935790 -41664140 - AluY SINE Alu -14 297 14 7404 195 75 107 chrX 120935790 120936369 -41663561 - L1MC2 LINE L1 -3420 3342 2746 1806 134 0 60 chrX 120936369 120936668 -41663262 - AluSx SINE Alu -1 311 31 5899 51 54 119 chrX 120936668 120937551 -41662379 - LTR12 LTR ERV1 0 826 1 7404 195 75 107 chrX 120937551 120937699 -41662231 - L1MC2 LINE L1 -4015 2747 2680 1612 189 29 4 chrX 120937699 120937995 -41661935 - AluJb SINE Alu 0 303 1 7404 195 75 107 chrX 120937995 120938080 -41661850 - L1MC2 LINE L1 -4082 2680 2594 1296 116 29 8 chrX 120938114 120938356 -41661574 - L1MC2 LINE L1 -3961 2603 2357 1099 175 0 0 chrX 120938366 120938543 -41661387 - FRAM SINE Alu -4 172 1 2791 169 140 60 chrX 120938559 120938883 -41661047 - L1MC2 LINE L1 -4196 2368 2071 2036 113 41 0 chrX 120938883 120939176 -41660754 - AluSq SINE Alu -8 305 1 2791 169 140 60 chrX 120939176 120939206 -41660724 - L1MC2 LINE L1 -4493 2071 2045 2327 88 3 13 chrX 120939206 120939511 -41660419 + AluSg SINE Alu 1 302 -8 2791 169 140 60 chrX 120939511 120940023 -41659907 - L1MC2 LINE L1 -4519 2045 1575 1232 171 164 15 chrX 120940023 120940286 -41659644 - AluJo SINE Alu 0 302 1 2791 169 140 60 chrX 120940286 120940602 -41659328 - L1MC2 LINE L1 -4989 1575 1286 1696 173 21 7 chrX 120940602 120940885 -41659045 - AluJo SINE Alu -23 289 3 2791 169 140 60 chrX 120940885 120940968 -41658962 - L1MC2 LINE L1 -5278 1286 913 752 189 0 28 chrX 120940974 120941117 -41658813 + FLAM_C SINE Alu 2 140 -3 2772 215 43 43 chrX 120941119 120942086 -41657844 - L1MC2 LINE L1 -5136 909 3 19601 85 7 9 chrX 120942120 120944239 -41655691 + L1PA5 LINE L1 11 2127 -4019 2523 61 0 0 chrX 120944239 120944535 -41655395 - AluY SINE Alu -15 296 1 19601 85 7 9 chrX 120944535 120945034 -41654896 + L1PA5 LINE L1 2127 2625 -3521 18475 48 1 1 chrX 120945034 120947985 -41651945 + L1PA5 LINE L1 3195 6149 -5 1805 155 3 26 chrX 120948007 120948209 -41651721 + AluSx SINE Alu 1 195 -117 2307 110 0 0 chrX 120948209 120948510 -41651420 + AluSq SINE Alu 1 301 -12 1805 155 3 26 chrX 120948510 120948616 -41651314 + AluSx SINE Alu 195 302 -10 6545 16 1 0 chrX 120948625 120949325 -41650605 + L1PA3 LINE L1 5454 6154 -1 30 27 0 0 chrX 120949325 120949362 -41650568 + AT_rich Low_complexity Low_complexity 1 37 0 822 168 0 0 chrX 120950845 120950970 -41648960 + FLAM_C SINE Alu 1 125 -18 31 0 0 0 chrX 120950999 120951030 -41648900 + GC_rich Low_complexity Low_complexity 1 31 0 2495 109 41 13 chrX 120951083 120951629 -41648301 - MER51A LTR ERV1 0 634 1 22 35 0 0 chrX 120952343 120952372 -41647558 + AT_rich Low_complexity Low_complexity 1 29 0 819 175 0 29 chrX 120952413 120952550 -41647380 - AluJo SINE Alu -177 135 3 1942 151 0 0 chrX 120952760 120953059 -41646871 + AluJb SINE Alu 3 301 -11 2457 60 0 13 chrX 120953784 120954084 -41645846 - AluY SINE Alu -15 296 1 204 122 61 0 chrX 120955456 120955505 -41644425 + T-rich Low_complexity Low_complexity 5 56 0 2477 201 31 18 chrX 120955915 120956428 -41643502 + MLT1F LTR MaLR 1 520 -22 1618 198 6 10 chrX 120956500 120956813 -41643117 - AluJo SINE Alu 0 312 1 2064 137 0 3 chrX 120956845 120957137 -41642793 + AluSx SINE Alu 1 291 -21 213 94 0 0 chrX 120957138 120957170 -41642760 + (TA)n Simple_repeat Simple_repeat 1 32 0 321 240 0 62 chrX 120957177 120957273 -41642657 - L1MC4 LINE L1 -1339 6703 6614 308 208 9 0 chrX 120957278 120957384 -41642546 + (TA)n Simple_repeat Simple_repeat 2 108 0 608 158 20 30 chrX 120957435 120957536 -41642394 - FLAM_C SINE Alu -14 129 30 24 0 0 0 chrX 120957648 120957672 -41642258 + AT_rich Low_complexity Low_complexity 1 24 0 8033 47 1 0 chrX 120957672 120959378 -41640552 - L1PA5 LINE L1 -1 6153 4447 1619 172 0 66 chrX 120960679 120960999 -41638931 - AluJo SINE Alu -13 299 1 1037 206 14 0 chrX 120961037 120961255 -41638675 + AluJo SINE Alu 85 305 -7 2188 93 10 0 chrX 120962133 120962424 -41637506 + AluSx SINE Alu 13 306 -6 864 189 228 77 chrX 120962442 120962855 -41637075 + MER66A LTR ERV1 100 478 0 359 255 10 41 chrX 120962891 120963128 -41636802 - FRAM SINE Alu 0 305 72 37 52 0 0 chrX 120963908 120963966 -41635964 + AT_rich Low_complexity Low_complexity 1 58 0 266 100 0 0 chrX 120964103 120964143 -41635787 - MLT2B1 LTR ERVL -480 40 1 1329 174 23 34 chrX 120964553 120964818 -41635112 + AluJb SINE Alu 25 286 -26 944 275 57 87 chrX 120965068 120965756 -41634174 - PABL_B LTR ERV1 0 667 1 5047 148 25 8 chrX 120966378 120967462 -41632468 + L1MA4A LINE L1 5113 6280 -23 701 158 88 0 chrX 120967466 120967580 -41632350 + FLAM_A SINE Alu 12 135 -7 2540 49 0 13 chrX 120967751 120968058 -41631872 - AluY SINE Alu -8 303 1 415 249 6 28 chrX 120968350 120968474 -41631456 - MIR SINE MIR -65 143 27 587 281 22 80 chrX 120968844 120969118 -41630812 + MIR SINE MIR 5 262 0 670 260 22 22 chrX 120969119 120969300 -41630630 - MIR SINE MIR -63 199 19 275 235 43 52 chrX 120969376 120969491 -41630439 - MER113 DNA MER1_type? -407 114 1 226 256 103 0 chrX 120969820 120969898 -41630032 - ORSL DNA AcHobo -7 268 183 234 0 0 0 chrX 120970000 120970026 -41629904 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1317 211 6 16 chrX 120970026 120970329 -41629601 - AluJo SINE Alu -8 304 3 478 59 0 188 chrX 120970347 120970448 -41629482 - AluJ/FRAM SINE Alu -13 299 218 189 0 0 0 chrX 120971509 120971530 -41628400 + (CA)n Simple_repeat Simple_repeat 1 21 0 1379 201 50 18 chrX 120972577 120972855 -41627075 + AluJo SINE Alu 1 287 -15 222 146 55 18 chrX 120972856 120972911 -41627019 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 1891 133 13 10 chrX 120974437 120974738 -41625192 + AluSx SINE Alu 6 307 -5 542 156 11 0 chrX 120974844 120974934 -41624996 + Alu SINE Alu 213 303 -8 32 0 0 0 chrX 120975085 120975117 -41624813 + AT_rich Low_complexity Low_complexity 1 32 0 724 215 8 0 chrX 120975184 120975305 -41624625 - FLAM_C SINE Alu -20 123 2 1441 169 8 0 chrX 120975539 120975793 -41624137 + AluJb SINE Alu 43 298 -14 2419 73 0 3 chrX 120976148 120976450 -41623480 + AluY SINE Alu 1 301 -10 241 216 0 20 chrX 120978966 120979017 -41620913 - MER96B DNA MER1_type? -37 380 331 1433 169 48 26 chrX 120979052 120979194 -41620736 - AluJo SINE Alu -25 287 150 2481 40 0 20 chrX 120979194 120979206 -41620724 - AluY SINE Alu -16 295 284 198 0 0 0 chrX 120979206 120979228 -41620702 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2481 40 0 20 chrX 120979228 120979516 -41620414 - AluY SINE Alu -27 284 1 1433 169 48 26 chrX 120979516 120979645 -41620285 - AluJo SINE Alu -162 150 10 269 196 31 41 chrX 120979655 120979752 -41620178 - MER96B DNA MER1_type? -81 336 241 591 112 0 0 chrX 120980407 120980496 -41619434 + (GA)n Simple_repeat Simple_repeat 1 89 0 384 22 0 0 chrX 120980866 120980911 -41619019 + (TG)n Simple_repeat Simple_repeat 1 45 0 375 109 0 174 chrX 120981964 120982056 -41617874 + AluJ/FRAM SINE Alu 218 293 -9 1236 173 8 30 chrX 120982073 120982310 -41617620 + AluJo SINE Alu 2 233 -79 3139 122 190 0 chrX 120982312 120982843 -41617087 - MER51A LTR ERV1 -2 632 1 305 169 0 52 chrX 120982843 120982920 -41617010 + AluJo SINE Alu 230 302 0 300 219 12 24 chrX 120983015 120983097 -41616833 + ORSL DNA AcHobo 188 268 -7 248 299 8 34 chrX 120983429 120983546 -41616384 + MER113 DNA MER1_type? 1 114 -407 679 253 16 22 chrX 120983622 120983804 -41616126 + MIR SINE MIR 19 199 -63 558 294 9 28 chrX 120983805 120984023 -41615907 - MIR SINE MIR 0 262 49 283 270 0 30 chrX 120984383 120984483 -41615447 + MIR SINE MIR 55 151 -111 2462 101 8 8 chrX 120984862 120985217 -41614713 + THE1A LTR MaLR 1 355 0 2173 141 0 0 chrX 120985312 120985611 -41614319 + AluSx SINE Alu 1 299 -13 736 183 0 8 chrX 120985611 120985726 -41614204 - FLAM_A SINE Alu -179 132 17 1607 168 32 7 chrX 120985735 120986145 -41613785 - L1MA4A LINE L1 -23 6280 5799 2436 144 41 106 chrX 120986259 120986804 -41613126 - MER51A LTR ERV1 -127 478 1 2538 47 3 3 chrX 120987309 120987608 -41612322 - AluY SINE Alu -12 299 1 821 154 23 0 chrX 120987623 120987753 -41612177 - AluJo SINE Alu -177 135 3 3622 186 71 97 chrX 120989030 120989866 -41610064 + L1MCb LINE L1 138 994 -5570 826 141 7 22 chrX 120989866 120990001 -41609929 - FLAM_C SINE Alu 0 133 1 3622 186 71 97 chrX 120990001 120990087 -41609843 + L1MCb LINE L1 994 1081 -5483 1732 174 10 3 chrX 120990087 120990375 -41609555 + AluJb SINE Alu 1 290 -22 3622 186 71 97 chrX 120990375 120990694 -41609236 + L1MCb LINE L1 1081 1407 -5157 1378 158 158 0 chrX 120990694 120990954 -41608976 + AluJo SINE Alu 1 301 -1 3622 186 71 97 chrX 120990954 120991555 -41608375 + L1MCb LINE L1 1407 2017 -4547 1666 166 58 0 chrX 120992025 120992302 -41607628 - AluSx SINE Alu -17 295 3 2394 88 0 0 chrX 120992779 120993086 -41606844 + AluY SINE Alu 1 307 -4 2259 97 3 7 chrX 120994256 120994555 -41605375 - AluSg SINE Alu -8 302 5 274 89 18 18 chrX 120994608 120994664 -41605266 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 1348 192 49 8 chrX 120994665 120994931 -41604999 - AluJo SINE Alu -25 287 11 349 152 20 50 chrX 120994941 120995040 -41604890 - MER96B DNA MER1_type? -81 336 241 222 286 0 0 chrX 120995740 120995796 -41604134 + GA-rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chrX 120996178 120996198 -41603732 + (TG)n Simple_repeat Simple_repeat 1 20 0 613 56 22 0 chrX 120996200 120996290 -41603640 + (GA)n Simple_repeat Simple_repeat 2 93 0 218 263 26 0 chrX 120997150 120997226 -41602704 + CT-rich Low_complexity Low_complexity 3 80 0 477 22 0 174 chrX 120997355 120997447 -41602483 + AluJ/FRAM SINE Alu 223 298 -14 1416 196 13 19 chrX 120997465 120997777 -41602153 + AluJo SINE Alu 3 312 0 21 0 0 0 chrX 120997779 120997800 -41602130 + AT_rich Low_complexity Low_complexity 1 21 0 708 219 39 22 chrX 120998490 120998668 -41601262 + MIR SINE MIR 19 199 -63 677 274 15 26 chrX 120998669 120998906 -41601024 - MIR SINE MIR 0 262 27 366 177 101 0 chrX 120999065 120999144 -41600786 - L1 LINE L1 -947 5199 5113 303 258 36 62 chrX 120999996 121000190 -41599740 + L1MC4 LINE L1 7845 8033 -9 1516 181 3 42 chrX 121000716 121001025 -41598905 - AluJo SINE Alu -14 298 2 2081 110 27 3 chrX 121001278 121001309 -41598621 - AluSq SINE Alu -7 306 277 489 17 0 0 chrX 121001309 121001367 -41598563 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2081 110 27 3 chrX 121001367 121001634 -41598296 - AluSq SINE Alu -36 277 1 748 139 41 0 chrX 121001641 121001763 -41598167 - L1PA16 LINE L1 -17 6149 6023 37 0 0 0 chrX 121001763 121001800 -41598130 + AT_rich Low_complexity Low_complexity 1 37 0 821 154 8 0 chrX 121001873 121002036 -41597894 + FRAM SINE Alu 23 186 0 413 264 98 21 chrX 121003328 121003521 -41596409 - MIR SINE MIR -9 253 46 325 278 103 16 chrX 121003564 121003690 -41596240 + MIR3 SINE MIR 57 193 -15 1302 137 25 0 chrX 121004090 121004287 -41595643 - L1P4 LINE L1 -361 5805 5604 345 189 53 0 chrX 121004299 121004394 -41595536 - L1M4 LINE L1 -3615 2531 2432 1474 125 5 0 chrX 121004407 121004615 -41595315 - AluJo SINE Alu -18 294 86 995 167 0 0 chrX 121004615 121004784 -41595146 - L1P4 LINE L1 -550 5616 5448 * 1409 202 72 58 chrX 121004783 121004889 -41595041 + L1 LINE L1 4910 5013 -1133 1701 175 24 0 chrX 121004889 121005180 -41594750 - AluJb SINE Alu -9 303 6 1409 202 72 58 chrX 121005180 121005559 -41594371 + L1 LINE L1 5013 5402 -744 4008 146 74 52 chrX 121005595 121006981 -41592949 - pTR5 LTR ERV1 0 2438 743 238 250 104 52 chrX 121007633 121007729 -41592201 + MLT1L LTR MaLR 424 524 -91 21 57 0 0 chrX 121007729 121007764 -41592166 + AT_rich Low_complexity Low_complexity 1 35 0 2390 85 3 0 chrX 121007784 121008077 -41591853 - AluSp SINE Alu -19 294 1 3713 213 34 30 chrX 121008244 121009461 -41590469 + L1ME LINE L1 4497 5708 -454 1521 123 32 0 chrX 121009469 121009720 -41590210 + L1MA7 LINE L1 6028 6286 -5 27 0 0 0 chrX 121009730 121009757 -41590173 + AT_rich Low_complexity Low_complexity 1 27 0 766 234 42 21 chrX 121010077 121010269 -41589661 - MER20 DNA MER1_type -23 196 1 2434 165 13 8 chrX 121010340 121010870 -41589060 - L1M2 LINE L1 -625 5687 5157 597 164 0 0 chrX 121010879 121010989 -41588941 + L1MA9 LINE L1 6203 6312 0 279 0 0 0 chrX 121012876 121012907 -41587023 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 1862 173 17 45 chrX 121013054 121013458 -41586472 + MLT2C1 LTR ERVL 5 397 0 1133 191 349 6 chrX 121013458 121013808 -41586122 + MLT1L-int LTR MaLR 1 470 -901 625 108 0 0 chrX 121013810 121013893 -41586037 + MER4A LTR ERV1 164 246 -418 306 29 0 0 chrX 121013896 121013931 -41585999 + MLT1L-int LTR MaLR 475 509 -862 3050 168 112 24 chrX 121013934 121014657 -41585273 + LTR1B LTR ERV1 1 785 0 2027 181 37 147 chrX 121014661 121015245 -41584685 + MLT1L-int LTR MaLR 513 1017 -354 1986 140 3 23 chrX 121015245 121015552 -41584378 - AluSx SINE Alu -11 301 1 2027 181 37 147 chrX 121015552 121015635 -41584295 + MLT1L-int LTR MaLR 1017 1107 -264 2438 139 122 94 chrX 121015635 121016281 -41583649 + MER4A LTR ERV1 1 664 0 3287 133 130 27 chrX 121016284 121016435 -41583495 + MER4A-int LTR ERV1 1 135 -6463 3772 59 22 26 chrX 121016435 121016927 -41583003 - LTR2B LTR ERV1 0 490 1 3287 133 130 27 chrX 121016927 121017451 -41582479 + MER4A-int LTR ERV1 135 812 -5786 328 135 0 19 chrX 121017511 121017563 -41582367 + LTR49 LTR ERV1 263 313 -282 2186 166 63 47 chrX 121017571 121017824 -41582106 + MER4A-int LTR ERV1 889 1137 -4809 2287 110 3 10 chrX 121017824 121018133 -41581797 - AluSp SINE Alu -6 307 1 2186 166 63 47 chrX 121018133 121018636 -41581294 + MER4A-int LTR ERV1 1137 2331 -3615 1468 103 0 0 chrX 121018647 121018832 -41581098 + AluSg SINE Alu 1 185 -125 687 174 189 0 chrX 121018850 121018982 -41580948 - MSTA LTR MaLR -236 192 36 3563 172 30 16 chrX 121021191 121021864 -41578066 - MER76 LTR ERV -2 686 5 2349 126 57 32 chrX 121022385 121022822 -41577108 + LTR7 LTR ERV1 1 448 -2 588 274 75 15 chrX 121022857 121023096 -41576834 - MIR SINE MIR -10 252 5 5391 80 12 1 chrX 121023109 121023793 -41576137 + LTR8 LTR ERV1 1 691 0 1824 158 0 0 chrX 121024156 121024428 -41575502 + AluJb SINE Alu 1 272 -40 4980 120 8 3 chrX 121024430 121025153 -41574777 + LTR8A LTR ERV1 1 727 0 369 277 30 18 chrX 121025181 121025347 -41574583 - MIR SINE MIR 0 262 95 209 278 183 0 chrX 121025520 121025635 -41574295 + MIR SINE MIR 114 249 -13 44965 37 7 1 chrX 121027034 121033149 -41566781 - L1PA4 LINE L1 0 6155 4 2259 162 95 0 chrX 121033161 121033562 -41566368 + MER74C LTR ERVL 1 439 -21 933 202 115 5 chrX 121033695 121033903 -41566027 + MER66B LTR ERV1 256 486 0 681 126 0 19 chrX 121034510 121034613 -41565317 - FRAM SINE Alu -16 160 60 1841 145 25 14 chrX 121034999 121035282 -41564648 - AluJo SINE Alu -26 286 1 309 269 39 0 chrX 121035393 121035471 -41564459 + MIR SINE MIR 69 149 -113 2099 135 26 32 chrX 121035955 121036332 -41563598 + THE1C LTR MaLR 1 375 0 1936 166 0 0 chrX 121038726 121039016 -41560914 + AluJb SINE Alu 1 290 -22 294 173 0 19 chrX 121039101 121039153 -41560777 + MLT1E3 LTR MaLR 18 68 -556 255 354 0 0 chrX 121039394 121039490 -41560440 + MIR3 SINE MIR 83 178 -30 732 219 79 0 chrX 121039938 121040102 -41559828 + LTR16C LTR ERVL 110 286 -205 1817 139 180 14 chrX 121040121 121040487 -41559443 - MSTA LTR MaLR 0 428 2 872 239 29 0 chrX 121040487 121040692 -41559238 + MER90 LTR ERV1 15 225 -350 6021 234 54 41 chrX 121040693 121041990 -41557940 + L1M4b LINE L1 3 1283 -5676 1729 171 0 20 chrX 121041990 121042283 -41557647 + AluJo SINE Alu 1 287 -25 6021 234 54 41 chrX 121042283 121042319 -41557611 + L1M4b LINE L1 1283 1317 -5642 2250 93 26 54 chrX 121042319 121042705 -41557225 + THE1C LTR MaLR 1 375 0 6021 234 54 41 chrX 121042705 121042839 -41557091 + L1M4b LINE L1 1317 1448 -5511 853 152 0 8 chrX 121042839 121042971 -41556959 + FLAM_C SINE Alu 1 131 -2 6021 234 54 41 chrX 121042971 121043823 -41556107 + L1M4b LINE L1 1448 2362 -4597 2766 90 36 10 chrX 121043976 121044366 -41555564 + MLT2A1 LTR ERVL 1 400 -44 458 134 7 54 chrX 121044375 121044678 -41555252 + (TA)n Simple_repeat Simple_repeat 1 288 0 285 127 4 37 chrX 121044679 121044751 -41555179 + MLT2A2 LTR ERVL 399 445 -8 259 247 99 0 chrX 121044853 121044934 -41554996 + MIR3 SINE MIR 82 170 -38 2570 131 27 2 chrX 121044982 121045395 -41554535 - MER95 LTR ERV 0 431 9 532 313 57 0 chrX 121045551 121045743 -41554187 - L2 LINE L2 -279 3034 2832 8797 174 79 29 chrX 121045745 121047451 -41552479 + L1M1 LINE L1 14 1805 -5760 1574 94 0 5 chrX 121047451 121047653 -41552277 + AluY SINE Alu 1 201 -110 420 159 0 0 chrX 121047654 121047717 -41552213 + MER57-int LTR ERV1 610 672 -6865 * 3504 115 41 37 chrX 121047714 121049031 -41550899 + MER57-int LTR ERV1 288 3783 -4033 1387 126 31 0 chrX 121049031 121049254 -41550676 + MER57B LTR ERV1 205 434 0 852 299 33 27 chrX 121049392 121049727 -41550203 + MER102b DNA MER1_type 4 340 -1 483 226 55 84 chrX 121049729 121050004 -41549926 - L1MC5 LINE L1 -34 7927 7661 265 321 53 40 chrX 121050291 121050322 -41549608 - MIR3 SINE MIR -76 132 103 2325 143 60 27 chrX 121050322 121050736 -41549194 + MSTA LTR MaLR 1 428 0 265 321 53 40 chrX 121050736 121050854 -41549076 - MIR3 SINE MIR -105 103 9 416 297 87 1 chrX 121050911 121051120 -41548810 - MIR SINE MIR 0 262 38 215 284 80 11 chrX 121051158 121051246 -41548684 + MIR SINE MIR 21 114 -148 237 65 0 0 chrX 121051997 121052028 -41547902 + (A)n Simple_repeat Simple_repeat 1 31 0 313 211 67 11 chrX 121052456 121052546 -41547384 - L1MB4 LINE L1 0 6180 6086 29 101 0 0 chrX 121056166 121056265 -41543665 + AT_rich Low_complexity Low_complexity 1 99 0 2228 90 0 0 chrX 121056764 121057053 -41542877 + AluSx SINE Alu 9 297 -15 258 224 0 26 chrX 121058445 121058521 -41541409 + G-rich Low_complexity Low_complexity 5 78 0 521 148 69 0 chrX 121058841 121058942 -41540988 - AluSc SINE Alu 0 309 202 343 220 17 51 chrX 121059083 121059201 -41540729 + (GGGTG)n Simple_repeat Simple_repeat 4 117 0 1319 132 0 0 chrX 121059232 121059421 -41540509 - AluSx SINE Alu -123 189 1 320 231 11 22 chrX 121059864 121059955 -41539975 + ORSL DNA AcHobo 178 267 -8 403 269 66 48 chrX 121060107 121060274 -41539656 + MIR SINE MIR 33 202 -60 3219 88 56 13 chrX 121060552 121061020 -41538910 - LTR15 LTR ERV1 -4 489 2 48865 84 9 5 chrX 121061022 121063684 -41536246 - HERV15 LTR ERV1 -1 8734 6083 2326 79 0 23 chrX 121063684 121063989 -41535941 - AluY SINE Alu -13 298 1 48865 84 9 5 chrX 121063989 121067725 -41532205 - HERV15 LTR ERV1 -2652 6083 2313 5429 94 77 13 chrX 121067706 121068839 -41531091 - HERV15 LTR ERV1 -7437 1298 1 * 3247 107 38 8 chrX 121068839 121069318 -41530612 - LTR15 LTR ERV1 0 493 1 2305 65 4 0 chrX 121069793 121070071 -41529859 + AluY SINE Alu 1 279 -32 1469 210 149 50 chrX 121070646 121071202 -41528728 - LTR36 LTR ERV1 0 611 1 2433 66 0 28 chrX 121072121 121072440 -41527490 - AluY SINE Alu -1 310 1 1815 109 0 0 chrX 121072675 121072931 -41526999 + L1PB1 LINE L1 5896 6151 0 21 0 0 0 chrX 121073234 121073255 -41526675 + AT_rich Low_complexity Low_complexity 1 21 0 225 339 26 35 chrX 121073363 121073478 -41526452 - MIR SINE MIR -12 250 137 29 0 0 0 chrX 121073896 121073925 -41526005 + AT_rich Low_complexity Low_complexity 1 29 0 2207 129 0 0 chrX 121073925 121074227 -41525703 - AluSx SINE Alu -10 302 1 247 330 10 0 chrX 121074392 121074492 -41525438 - MIR SINE MIR -87 175 75 2361 162 39 7 chrX 121074495 121074909 -41525021 - MSTB1 LTR MaLR 0 432 6 683 179 8 22 chrX 121074982 121075116 -41524814 - FLAM_C SINE Alu -11 132 1 1050 150 0 0 chrX 121075121 121075274 -41524656 - FRAM SINE Alu -23 153 1 1915 160 0 3 chrX 121075404 121075697 -41524233 + AluJb SINE Alu 1 292 -20 2033 135 7 10 chrX 121075700 121076004 -41523926 + AluSx SINE Alu 1 303 -9 201 250 0 0 chrX 121076049 121076093 -41523837 - L2 LINE L2 -3 3310 3267 3140 133 72 67 chrX 121076577 121077230 -41522700 + LTR1 LTR ERV1 16 671 -114 1956 119 95 0 chrX 121077286 121077571 -41522359 - AluSx SINE Alu 0 312 1 20784 65 15 1 chrX 121078567 121081110 -41518820 + Harlequin LTR ERV1 2491 5069 -1827 5501 110 7 0 chrX 121081101 121081857 -41518073 + Harlequin LTR ERV1 6135 6895 -1 * 1719 230 67 35 chrX 121081857 121082062 -41517868 + LTR2 LTR ERV1 1 198 -251 186 43 0 0 chrX 121082062 121082085 -41517845 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1719 230 67 35 chrX 121082085 121082314 -41517616 + LTR2 LTR ERV1 198 449 0 808 104 9 0 chrX 121082317 121082423 -41517507 + MER4B LTR ERV1 504 610 0 6861 135 158 73 chrX 121082426 121083381 -41516549 + MER4B-int LTR ERV1 1 873 -5725 2140 108 14 0 chrX 121083381 121083668 -41516262 - AluSx SINE Alu -21 291 1 6861 135 158 73 chrX 121083668 121083745 -41516185 + MER4B-int LTR ERV1 873 942 -5656 411 21 0 0 chrX 121083745 121083793 -41516137 + (TG)n Simple_repeat Simple_repeat 2 49 0 6861 135 158 73 chrX 121083793 121084451 -41515479 + MER4B-int LTR ERV1 942 1836 -4762 1206 77 0 18 chrX 121084451 121084620 -41515310 - L1P LINE L1 -1573 4573 4408 7545 51 7 0 chrX 121084620 121085838 -41514092 + L1PA7 LINE L1 4915 6143 -11 4942 128 65 4 chrX 121085838 121086632 -41513298 + L1PA14 LINE L1 5319 6161 0 5118 145 59 13 chrX 121087684 121088547 -41511383 - MER4D LTR ERV1 0 903 1 1891 130 56 7 chrX 121089321 121089605 -41510325 - AluSg1 SINE Alu -11 298 1 1697 173 11 3 chrX 121090175 121090508 -41509422 - AluJo SINE Alu 0 335 1 398 145 69 13 chrX 121092995 121093154 -41506776 + (TA)n Simple_repeat Simple_repeat 2 169 0 320 96 5 287 chrX 121093671 121093719 -41506211 + MER96B DNA MER1_type? 45 105 -312 1922 120 46 11 chrX 121093719 121094002 -41505928 - AluSg SINE Alu -17 293 1 320 96 5 287 chrX 121094002 121094021 -41505909 + MER96B DNA MER1_type? 105 128 -289 1694 143 11 24 chrX 121094021 121094335 -41505595 - AluJb SINE Alu 0 310 1 320 96 5 287 chrX 121094335 121094385 -41505545 + MER96B DNA MER1_type? 128 96 -321 1770 172 0 25 chrX 121094385 121094705 -41505225 + AluJb SINE Alu 1 312 0 320 96 5 287 chrX 121094705 121094772 -41505158 + MER96B DNA MER1_type? 95 179 -238 22 0 0 0 chrX 121094820 121094842 -41505088 + AT_rich Low_complexity Low_complexity 1 22 0 418 194 0 0 chrX 121094850 121094917 -41505013 + AluSp SINE Alu 136 202 -111 195 69 0 0 chrX 121094935 121094964 -41504966 + (CAA)n Simple_repeat Simple_repeat 1 29 0 1744 151 22 9 chrX 121094973 121095159 -41504771 + L1MB2 LINE L1 5111 5293 -887 186 43 0 0 chrX 121095159 121095182 -41504748 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1744 151 22 9 chrX 121095182 121095423 -41504507 + L1MB2 LINE L1 5293 5543 -637 2390 137 8 16 chrX 121095431 121095812 -41504118 + L1MB2 LINE L1 5784 6161 -10 254 174 31 71 chrX 121096582 121096680 -41503250 + G-rich Low_complexity Low_complexity 2 95 0 504 125 0 62 chrX 121096686 121096878 -41503052 + (TGGGGG)n Simple_repeat Simple_repeat 1 180 0 24 0 0 0 chrX 121097469 121097493 -41502437 + AT_rich Low_complexity Low_complexity 1 24 0 865 183 18 30 chrX 121097686 121097850 -41502080 + FRAM SINE Alu 1 162 -4 40 37 0 0 chrX 121097990 121098044 -41501886 + AT_rich Low_complexity Low_complexity 1 54 0 218 161 18 36 chrX 121098293 121098349 -41501581 + GA-rich Low_complexity Low_complexity 3 57 0 449 288 8 0 chrX 121098431 121098556 -41501374 + MIR SINE MIR 76 201 -61 1345 189 78 31 chrX 121098559 121099102 -41500828 - LTR36 LTR ERV1 0 611 1 553 305 73 19 chrX 121099117 121099376 -41500554 + L2 LINE L2 2472 2744 -570 536 251 41 41 chrX 121099766 121099937 -41499993 - MIR SINE MIR -70 192 22 28 0 0 0 chrX 121100028 121100056 -41499874 + AT_rich Low_complexity Low_complexity 1 28 0 467 198 10 21 chrX 121100460 121100556 -41499374 - ORSL DNA AcHobo 0 275 181 327 209 122 0 chrX 121102043 121102158 -41497772 - MER96B DNA MER1_type? -239 178 50 234 219 21 10 chrX 121102702 121102798 -41497132 + (TA)n Simple_repeat Simple_repeat 2 98 0 389 282 30 8 chrX 121102821 121102952 -41496978 + MIR SINE MIR 129 262 0 700 172 39 89 chrX 121103039 121103242 -41496688 + L1MC5 LINE L1 7709 7901 -60 1251 284 9 9 chrX 121103280 121103618 -41496312 - MER102b DNA MER1_type -3 338 1 728 290 33 12 chrX 121104044 121104378 -41495552 + HAL1b LINE L1 979 1319 -29 1687 26 5 0 chrX 121104475 121104664 -41495266 - L1PA4 LINE L1 -5 6150 5961 633 174 84 7 chrX 121104677 121104832 -41495098 + MER53 DNA DNA 23 189 0 230 231 31 0 chrX 121104969 121105034 -41494896 + (TA)n Simple_repeat Simple_repeat 2 68 0 2548 160 28 20 chrX 121105147 121105174 -41494756 + LOR1b LTR ERV1 1 26 -435 2426 122 0 20 chrX 121105174 121105518 -41494412 - MER1B DNA MER1_type 0 337 1 2548 160 28 20 chrX 121105518 121105947 -41493983 + LOR1b LTR ERV1 26 461 0 235 100 71 0 chrX 121106731 121106801 -41493129 + (TA)n Simple_repeat Simple_repeat 2 76 0 708 148 0 0 chrX 121106819 121106920 -41493010 - FLAM_A SINE Alu -20 122 22 228 276 92 0 chrX 121106921 121106997 -41492933 + L2 LINE L2 3132 3214 -58 2013 174 31 69 chrX 121106997 121107487 -41492443 + MER31A LTR ERV1 1 471 -14 942 190 36 125 chrX 121107545 121107850 -41492080 + MER31A-int LTR ERV1 15 292 -4644 1354 121 0 71 chrX 121107890 121108114 -41491816 - AluJb SINE Alu -20 292 85 1418 180 19 0 chrX 121108118 121108374 -41491556 + MER31A-int LTR ERV1 274 534 -4402 876 245 84 29 chrX 121108384 121108786 -41491144 - LTR36 LTR ERV1 0 611 134 3844 90 3 160 chrX 121108798 121109550 -41490380 - MER51A LTR ERV1 0 634 1 381 240 77 0 chrX 121109550 121109645 -41490285 - LTR36 LTR ERV1 -457 154 52 561 342 37 64 chrX 121109731 121110140 -41489790 - LTR36-int LTR ERV1 -87 7035 6638 1283 210 5 0 chrX 121110276 121110495 -41489435 - MER49 LTR ERV1 -203 720 501 1277 145 8 40 chrX 121110502 121110750 -41489180 - MER4D LTR ERV1 -632 240 1 1291 131 53 86 chrX 121110760 121111005 -41488925 - LTR36-int LTR ERV1 -1026 7094 6858 295 171 200 0 chrX 121111010 121111080 -41488850 - LTR36-int LTR ERV1 -299 6459 6376 * 647 215 111 0 chrX 121111073 121111217 -41488713 - LTR36-int LTR ERV1 -615 6143 5984 832 155 11 105 chrX 121111419 121111600 -41488330 - LTR36-int LTR ERV1 -4171 3949 3786 2939 178 221 96 chrX 121111601 121112507 -41487423 - LTR28 LTR ERV1 -1 1019 1 22 88 0 0 chrX 121112602 121112659 -41487271 + AT_rich Low_complexity Low_complexity 1 57 0 963 185 47 64 chrX 121112686 121113116 -41486814 - LTR36-int LTR ERV1 -2156 4175 3731 3739 162 73 92 chrX 121113213 121114087 -41485843 - LTR36-int LTR ERV1 -324 1927 1038 228 67 0 0 chrX 121114094 121114124 -41485806 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1702 198 3 0 chrX 121114124 121114409 -41485521 - AluSx SINE Alu -23 289 1 3739 162 73 92 chrX 121114409 121114545 -41485385 - LTR36-int LTR ERV1 -1213 1038 901 2179 125 0 10 chrX 121114545 121114848 -41485082 - AluSx SINE Alu -12 300 1 3739 162 73 92 chrX 121114848 121115333 -41484597 - LTR36-int LTR ERV1 -1350 901 408 469 217 0 0 chrX 121115333 121115416 -41484514 - AluSq/x SINE Alu -185 128 46 3739 162 73 92 chrX 121115416 121115729 -41484201 - LTR36-int LTR ERV1 -1843 408 1083 279 0 0 0 chrX 121115729 121115760 -41484170 + (TA)n Simple_repeat Simple_repeat 2 32 0 3739 162 73 92 chrX 121115760 121116054 -41483876 - LTR36-int LTR ERV1 -1167 1084 786 898 263 42 31 chrX 121116094 121116386 -41483544 - LTR36-int LTR ERV1 -2730 1555 97 569 310 7 66 chrX 121116642 121116913 -41483017 - LTR36-int LTR ERV1 -1422 364 110 368 191 71 0 chrX 121116977 121117061 -41482869 - LTR36 LTR ERV1 -2 609 520 2121 141 0 3 chrX 121117061 121117374 -41482556 + AluSx SINE Alu 1 312 0 320 145 0 16 chrX 121117377 121117439 -41482491 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 1117 211 162 49 chrX 121117439 121117926 -41482004 - LTR36 LTR ERV1 -69 542 1 5551 166 101 65 chrX 121117927 121118874 -41481056 + MER31-int LTR ERV1 535 1446 -3490 1804 149 3 28 chrX 121118874 121119220 -41480710 + AluSx SINE Alu 1 339 0 5551 166 101 65 chrX 121119220 121119540 -41480390 + MER31-int LTR ERV1 1446 1866 -3070 2232 89 0 0 chrX 121119540 121119848 -41480082 - AluY SINE Alu 0 308 1 5551 166 101 65 chrX 121119848 121120006 -41479924 + MER31-int LTR ERV1 1866 2017 -2919 943 140 0 7 chrX 121120006 121120149 -41479781 + MLT1A1 LTR MaLR 1 142 -223 409 185 0 0 chrX 121120560 121120641 -41479289 + MER77 LTR ERV1 467 547 -58 1593 232 53 88 chrX 121120809 121121440 -41478490 + LTR9B LTR ERV1 7 601 -43 625 235 20 15 chrX 121121474 121121670 -41478260 - L1 LINE L1 -2663 3483 3287 6074 145 14 33 chrX 121121678 121123092 -41476838 - L1PA16 LINE L1 -9 6157 4784 207 0 0 0 chrX 121123092 121123115 -41476815 + (T)n Simple_repeat Simple_repeat 1 23 0 1507 245 39 0 chrX 121123118 121123611 -41476319 - L1 LINE L1 -2834 3312 2801 5050 53 8 0 chrX 121123614 121124200 -41475730 + LTR10C LTR ERV1 1 591 0 897 226 29 57 chrX 121124218 121124497 -41475433 + LTR10C-int LTR ERV1 17 287 -6362 267 188 177 29 chrX 121124497 121124635 -41475295 + LTR10C-int LTR ERV1 502 719 -5930 186 222 0 0 chrX 121125254 121125308 -41474622 + GA-rich Low_complexity Low_complexity 1 54 0 3947 93 26 6 chrX 121125355 121125979 -41473951 + LTR10C-int LTR ERV1 1902 2537 -4359 2256 261 23 15 chrX 121126166 121126906 -41473024 + Harlequin LTR ERV1 2653 5117 -1532 3499 88 31 20 chrX 121126974 121127462 -41472468 + LTR15 LTR ERV1 1 493 0 62991 82 8 7 chrX 121127462 121133509 -41466421 + HERV15 LTR ERV1 1 6078 -2657 2205 78 0 23 chrX 121133509 121133815 -41466115 + AluY SINE Alu 1 299 -12 62991 82 8 7 chrX 121133815 121136477 -41463453 + HERV15 LTR ERV1 6078 8734 -1 3204 88 56 13 chrX 121136479 121136947 -41462983 + LTR15 LTR ERV1 2 489 -4 467 269 66 48 chrX 121137225 121137392 -41462538 - MIR SINE MIR -60 202 33 322 231 11 22 chrX 121137544 121137635 -41462295 - ORSL DNA AcHobo -8 267 178 1244 132 0 0 chrX 121138078 121138267 -41461663 + AluSx SINE Alu 1 189 -123 366 229 34 25 chrX 121138298 121138416 -41461514 + (CACCC)n Simple_repeat Simple_repeat 4 122 0 569 110 70 0 chrX 121138557 121138657 -41461273 + AluSc SINE Alu 202 308 -1 258 224 0 26 chrX 121138984 121139060 -41460870 + C-rich Low_complexity Low_complexity 5 78 0 2135 87 0 0 chrX 121140452 121140741 -41459189 - AluSx SINE Alu -15 297 9 29 101 0 0 chrX 121141240 121141339 -41458591 + AT_rich Low_complexity Low_complexity 1 99 0 304 211 67 11 chrX 121144959 121145049 -41454881 + L1MB4 LINE L1 6086 6180 0 228 67 0 0 chrX 121145477 121145507 -41454423 + (T)n Simple_repeat Simple_repeat 1 30 0 294 319 181 5 chrX 121146142 121146346 -41453584 - MIR SINE MIR -2 260 21 501 297 87 1 chrX 121146384 121146593 -41453337 + MIR SINE MIR 38 262 0 288 326 56 32 chrX 121146650 121146768 -41453162 + MIR3 SINE MIR 9 130 -113 2335 143 60 27 chrX 121146768 121147182 -41452748 - MSTA LTR MaLR 0 428 1 288 326 56 32 chrX 121147182 121147221 -41452709 + MIR3 SINE MIR 130 167 -76 475 226 55 84 chrX 121147500 121147775 -41452155 + L1MC5 LINE L1 7661 7927 -34 828 301 33 27 chrX 121147777 121148112 -41451818 - MER102b DNA MER1_type -1 340 4 1360 130 31 0 chrX 121148250 121148473 -41451457 - MER57B LTR ERV1 0 434 205 3530 124 41 35 chrX 121148473 121149790 -41450140 - MER57-int LTR ERV1 -4033 3783 288 416 159 0 0 chrX 121149787 121149850 -41450080 - MER57-int LTR ERV1 -6865 672 610 * 1482 94 0 5 chrX 121149851 121150053 -41449877 - AluY SINE Alu -110 201 1 8851 175 79 29 chrX 121150053 121151759 -41448171 - L1M1 LINE L1 -5760 1805 14 590 286 62 5 chrX 121151761 121151953 -41447977 + L2 LINE L2 2832 3034 -279 2569 128 27 2 chrX 121152109 121152522 -41447408 + MER95 LTR ERV 9 431 0 293 247 99 0 chrX 121152570 121152651 -41447279 - MIR3 SINE MIR -38 170 82 305 113 0 38 chrX 121152753 121152806 -41447124 - MLT2B1 LTR ERVL -8 512 462 319 186 0 57 chrX 121152818 121152888 -41447042 + L1MC4 LINE L1 6638 6703 -1339 * 324 227 27 64 chrX 121152885 121152995 -41446935 - L1MC4 LINE L1 -1323 6719 6614 309 181 9 152 chrX 121153023 121153128 -41446802 - L1MC4 LINE L1 -1339 6703 6614 2767 90 36 10 chrX 121153139 121153529 -41446401 - MLT2A1 LTR ERVL -44 400 1 6022 235 51 45 chrX 121153682 121154534 -41445396 - L1M4c LINE L1 -4597 2362 1517 861 152 0 8 chrX 121154534 121154666 -41445264 - FLAM_C SINE Alu -2 131 1 6022 235 51 45 chrX 121154666 121154800 -41445130 - L1M4c LINE L1 -5442 1517 1385 2254 93 26 54 chrX 121154800 121155186 -41444744 - THE1C LTR MaLR 0 375 1 6022 235 51 45 chrX 121155186 121155222 -41444708 - L1M4c LINE L1 -5574 1385 1351 1620 171 0 17 chrX 121155222 121155514 -41444416 - AluJo SINE Alu -25 287 1 6022 235 51 45 chrX 121155514 121156811 -41443119 - L1M4c LINE L1 -5608 1351 3 872 239 29 0 chrX 121156812 121157017 -41442913 - MER90 LTR ERV1 -350 225 15 1800 142 180 14 chrX 121157017 121157383 -41442547 + MSTA LTR MaLR 2 428 0 740 219 79 0 chrX 121157402 121157566 -41442364 - LTR16C LTR ERVL -205 286 110 181 351 54 0 chrX 121157827 121157901 -41442029 - L2 LINE L2 -31 3241 3164 292 354 0 0 chrX 121158014 121158110 -41441820 - MIR3 SINE MIR -30 178 83 293 173 0 19 chrX 121158351 121158403 -41441527 - MLT1E3 LTR MaLR -556 68 18 1802 169 0 0 chrX 121158488 121158778 -41441152 - AluJb SINE Alu -22 290 1 2106 135 26 32 chrX 121161171 121161548 -41438382 - THE1C LTR MaLR 0 375 1 333 308 33 0 chrX 121162032 121162123 -41437807 - MIR SINE MIR -113 149 56 1727 145 25 14 chrX 121162221 121162504 -41437426 + AluJo SINE Alu 1 286 -26 689 125 0 19 chrX 121162890 121162994 -41436936 + FRAM SINE Alu 60 161 -15 942 202 115 5 chrX 121163598 121163806 -41436124 - MER66B LTR ERV1 0 486 256 2271 165 95 0 chrX 121163939 121164340 -41435590 - MER74C LTR ERVL -21 439 1 45077 38 5 1 chrX 121164352 121170481 -41429449 + L1PA4 LINE L1 4 6155 0 265 278 183 0 chrX 121171880 121171995 -41427935 - MIR SINE MIR -13 249 114 434 277 30 18 chrX 121172168 121172334 -41427596 + MIR SINE MIR 95 262 0 4986 120 8 3 chrX 121172362 121173085 -41426845 - LTR8A LTR ERV1 0 727 1 1714 141 0 0 chrX 121173087 121173349 -41426581 - AluJb SINE Alu -40 272 11 5407 79 12 1 chrX 121173722 121174406 -41425524 - LTR8 LTR ERV1 0 691 1 678 305 54 4 chrX 121174419 121174658 -41425272 + MIR SINE MIR 2 252 -10 2364 126 57 32 chrX 121174693 121175130 -41424800 - LTR7 LTR ERV1 -2 448 1 3583 167 34 16 chrX 121175651 121176321 -41423609 + MER76 LTR ERV 5 686 -2 1763 128 181 35 chrX 121178530 121178668 -41421262 + MSTA LTR MaLR 36 153 -275 2393 73 0 0 chrX 121178668 121178968 -41420962 + AluSg SINE Alu 1 300 -10 1763 128 181 35 chrX 121178968 121179172 -41420758 + MSTA LTR MaLR 153 428 0 611 133 72 94 chrX 121179242 121179417 -41420513 + MLT1A2 LTR MaLR 5 176 -209 2350 92 0 22 chrX 121179417 121179734 -41420196 + AluSx SINE Alu 1 310 -2 191 188 21 0 chrX 121179749 121179797 -41420133 + CT-rich Low_complexity Low_complexity 2 50 0 962 161 21 21 chrX 121179817 121180003 -41419927 + MLT1A2 LTR MaLR 189 374 0 621 328 99 40 chrX 121180004 121180736 -41419194 + L2 LINE L2 2459 3272 0 341 291 94 0 chrX 121183546 121183663 -41416267 - MIR3 SINE MIR 0 208 81 231 327 7 33 chrX 121183946 121184099 -41415831 - L1ME LINE L1 -296 5825 5677 677 291 59 0 chrX 121184159 121184362 -41415568 + MIR SINE MIR 48 262 0 3099 123 5 19 chrX 121184636 121185067 -41414863 - MSTC LTR MaLR 0 428 4 1460 260 81 62 chrX 121185880 121186426 -41413504 + MLT2F LTR ERVL 5 560 -103 4206 107 51 8 chrX 121186432 121187021 -41412909 + LTR18B LTR ERVL 1 614 0 1542 182 3 24 chrX 121187042 121187338 -41412592 + HERVL18 LTR ERVL 19 308 -5739 783 254 12 0 chrX 121187315 121187488 -41412442 + HERVL18 LTR ERVL 492 666 -5381 * 1198 188 8 16 chrX 121187516 121187878 -41412052 + HERVL18 LTR ERVL 1388 1810 -4237 * 1343 154 18 2 chrX 121187877 121188149 -41411781 + HERVL18 LTR ERVL 2119 2452 -3595 * 2959 151 3 9 chrX 121188146 121188810 -41411120 + HERVL18 LTR ERVL 2718 3491 -2556 3962 96 68 30 chrX 121189013 121189486 -41410444 + LTR18B LTR ERVL 1 503 -111 2374 56 0 0 chrX 121189486 121189806 -41410124 + AluY SINE Alu 1 320 0 3962 96 68 30 chrX 121189806 121189923 -41410007 + LTR18B LTR ERVL 503 614 0 301 188 138 0 chrX 121189925 121190005 -41409925 + MLT2E LTR ERVL 529 619 -9 1648 172 88 0 chrX 121190622 121190939 -41408991 + AluJb SINE Alu 1 312 0 579 110 68 76 chrX 121191052 121191170 -41408760 + LTR18B LTR ERVL 57 173 -441 2375 103 0 0 chrX 121192615 121192927 -41407003 - AluSx SINE Alu 0 312 1 652 336 76 18 chrX 121193293 121193742 -41406188 + L2 LINE L2 1984 2458 -856 5610 185 45 30 chrX 121193757 121195506 -41404424 + L1MA4 LINE L1 14 1806 -4065 3096 83 22 2 chrX 121195555 121195966 -41403964 + L1MA2 LINE L1 5886 6304 0 12088 126 26 61 chrX 121195979 121196081 -41403849 + L1MA4 LINE L1 3211 3315 -3167 1444 191 68 7 chrX 121196081 121196375 -41403555 + AluJo SINE Alu 1 312 0 12088 126 26 61 chrX 121196375 121196913 -41403017 + L1MA4 LINE L1 3315 3870 -2612 258 32 0 0 chrX 121196913 121196944 -41402986 + (CAA)n Simple_repeat Simple_repeat 3 33 0 12088 126 26 61 chrX 121196944 121198335 -41401595 + L1MA4 LINE L1 3870 5078 -1404 767 155 8 47 chrX 121198335 121198464 -41401466 + FLAM_A SINE Alu 1 124 -9 12088 126 26 61 chrX 121198464 121199818 -41400112 + L1MA4 LINE L1 5078 6477 -5 189 191 0 43 chrX 121200305 121200352 -41399578 - MIR SINE MIR -3 259 215 2052 150 3 0 chrX 121200821 121201121 -41398809 + AluSx SINE Alu 1 301 -11 1256 126 0 0 chrX 121201441 121201615 -41398315 + AluSg/x SINE Alu 125 298 -14 2239 67 3 7 chrX 121201618 121201927 -41398003 + AluY SINE Alu 1 308 0 262 31 0 0 chrX 121202200 121202232 -41397698 + L1PA8 LINE L1 6129 6160 -12 4122 130 169 155 chrX 121203509 121204769 -41395161 - MER52C LTR ERV1 0 1278 1 3250 101 41 9 chrX 121204815 121205280 -41394650 - LTR15 LTR ERV1 -13 480 1 681 230 8 0 chrX 121205760 121205886 -41394044 + FLAM_A SINE Alu 1 127 -6 252 191 34 11 chrX 121205886 121205975 -41393955 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 1625 171 79 0 chrX 121206018 121206298 -41393632 + AluJb SINE Alu 1 302 -10 2668 212 44 61 chrX 121206300 121206803 -41393127 - MER21B LTR ERV1 -25 906 396 1429 92 16 76 chrX 121206803 121207000 -41392930 + L1MA6 LINE L1 6063 6270 -30 1618 196 0 11 chrX 121207000 121207285 -41392645 + AluJo SINE Alu 1 282 -30 396 0 0 0 chrX 121207289 121207333 -41392597 + (CA)n Simple_repeat Simple_repeat 2 45 0 1429 92 16 76 chrX 121207333 121207380 -41392550 + L1MA6 LINE L1 6273 6297 -3 2668 212 44 61 chrX 121207380 121207407 -41392523 - MER21B LTR ERV1 -535 396 370 1577 181 14 28 chrX 121207407 121207694 -41392236 - AluJo SINE Alu -24 288 6 2668 212 44 61 chrX 121207694 121207892 -41392038 - MER21B LTR ERV1 -561 370 98 519 221 0 0 chrX 121207930 121208025 -41391905 - MER21B LTR ERV1 -768 95 1 2567 125 3 42 chrX 121208283 121208840 -41391090 + MER4A LTR ERV1 3 603 -61 2441 138 212 69 chrX 121208840 121209377 -41390553 + LTR18B LTR ERVL 1 614 0 2567 125 3 42 chrX 121209377 121209437 -41390493 + MER4A LTR ERV1 603 664 0 3191 108 181 21 chrX 121209440 121210097 -41389833 + MER4A-int LTR ERV1 1 828 -5770 1239 266 36 11 chrX 121210126 121210454 -41389476 + MER4A-int LTR ERV1 1865 3043 -4170 1654 108 36 12 chrX 121210466 121210716 -41389214 + MER4A-int LTR ERV1 189 444 -6314 * 12792 116 65 36 chrX 121210714 121211746 -41388184 + MER4A-int LTR ERV1 998 1998 -4600 2090 119 3 22 chrX 121211746 121212064 -41387866 + AluJb SINE Alu 1 312 0 12792 116 65 36 chrX 121212064 121213902 -41386028 + MER4A-int LTR ERV1 1998 3781 -2817 2505 52 0 30 chrX 121213902 121214207 -41385723 - AluY SINE Alu -15 296 1 12792 116 65 36 chrX 121214207 121215699 -41384231 + MER4A-int LTR ERV1 3781 6598 0 3789 94 45 58 chrX 121215712 121216316 -41383614 + MER4A LTR ERV1 5 600 0 933 184 0 7 chrX 121217023 121217175 -41382755 + MER8 DNA MER2_type 27 177 -62 486 127 0 25 chrX 121217203 121217282 -41382648 - Tigger2 DNA MER2_type -2641 77 1 645 194 111 83 chrX 121218048 121218132 -41381798 + L1MC5 LINE L1 7635 7715 -246 1843 141 84 34 chrX 121218132 121218487 -41381443 + THE1C LTR MaLR 1 373 -2 645 194 111 83 chrX 121218487 121218690 -41381240 + L1MC5 LINE L1 7715 7930 -31 278 143 196 0 chrX 121218868 121218924 -41381006 - L2 LINE L2 0 3272 3206 365 243 118 30 chrX 121218924 121219228 -41380702 + L1MC4 LINE L1 7595 8042 0 1025 149 23 0 chrX 121219642 121219816 -41380114 + AluSg/x SINE Alu 135 312 0 189 0 0 0 chrX 121219825 121219846 -41380084 + (CAGG)n Simple_repeat Simple_repeat 2 22 0 365 162 0 14 chrX 121219847 121219921 -41380009 + GA-rich Low_complexity Low_complexity 1 73 0 279 303 0 0 chrX 121219999 121220075 -41379855 - L2 LINE L2 -541 2773 2698 210 233 267 26 chrX 121220334 121220450 -41379480 - MER91A DNA MER1_type -35 161 18 591 193 193 50 chrX 121220453 121220655 -41379275 + MIR SINE MIR 32 262 0 1816 169 7 3 chrX 121221276 121221572 -41378358 + AluJb SINE Alu 15 311 -1 276 196 43 98 chrX 121221822 121221914 -41378016 + MER4D LTR ERV1 743 829 -74 387 0 0 0 chrX 121221922 121221965 -41377965 + (TG)n Simple_repeat Simple_repeat 2 44 0 1880 181 3 0 chrX 121222019 121222328 -41377602 + AluJb SINE Alu 1 310 -2 2743 198 40 10 chrX 121223339 121223843 -41376087 + LTR53 LTR ERVL 1 519 0 721 236 186 14 chrX 121224133 121224353 -41375577 - MIR SINE MIR -2 260 3 227 273 0 36 chrX 121224462 121224517 -41375413 + MIR SINE MIR 194 246 -16 320 280 140 67 chrX 121224831 121224981 -41374949 - L2 LINE L2 -2 3270 3110 201 228 18 35 chrX 121226063 121226120 -41373810 + (TATG)n Simple_repeat Simple_repeat 3 58 0 383 115 52 83 chrX 121226255 121226351 -41373579 + MER53 DNA DNA 3 95 -94 252 263 95 21 chrX 121226360 121226455 -41373475 - HAL1b LINE L1 -447 901 800 2379 103 0 0 chrX 121226456 121226768 -41373162 - AluSx SINE Alu 0 312 1 907 262 55 78 chrX 121226784 121226804 -41373126 + L2 LINE L2 2930 2949 -364 2223 218 67 24 chrX 121226804 121227355 -41372575 + MER90 LTR ERV1 1 575 0 907 262 55 78 chrX 121227355 121227719 -41372211 + L2 LINE L2 2949 3305 -8 564 220 120 33 chrX 121227742 121227983 -41371947 - HAL1b LINE L1 -552 796 535 180 231 0 0 chrX 121228162 121228201 -41371729 - MIR SINE MIR -6 256 218 491 236 180 17 chrX 121228445 121228623 -41371307 - MIR SINE MIR -53 209 3 315 113 129 16 chrX 121228922 121228984 -41370946 - AluSp SINE Alu -200 103 35 216 274 0 0 chrX 121230373 121230424 -41369506 - L2 LINE L2 0 3272 3222 29 47 0 0 chrX 121230458 121230501 -41369429 + AT_rich Low_complexity Low_complexity 1 43 0 316 304 99 52 chrX 121230557 121230748 -41369182 + L2 LINE L2 3073 3272 0 206 222 0 32 chrX 121231314 121231377 -41368553 + (CGG)n Simple_repeat Simple_repeat 1 61 0 226 171 57 0 chrX 121232819 121232889 -41367041 + (TA)n Simple_repeat Simple_repeat 2 75 0 180 0 0 0 chrX 121234499 121234519 -41365411 + (ATG)n Simple_repeat Simple_repeat 1 20 0 348 357 52 24 chrX 121241707 121241917 -41358013 + L2 LINE L2 2425 2640 -674 228 200 100 0 chrX 121242026 121242076 -41357854 - MIR SINE MIR -60 148 94 409 230 70 10 chrX 121242373 121242473 -41357457 + L2 LINE L2 3208 3313 0 2134 103 0 0 chrX 121242528 121242835 -41357095 + AluSx SINE Alu 1 307 0 2324 86 7 0 chrX 121245395 121245696 -41354234 - AluSp SINE Alu -10 303 1 848 282 31 9 chrX 121246142 121246369 -41353561 + MIR SINE MIR 31 262 0 2317 78 0 36 chrX 121246383 121246689 -41353241 + AluSg SINE Alu 1 295 -15 276 267 78 11 chrX 121246879 121246969 -41352961 + L2 LINE L2 3172 3267 -5 980 47 94 0 chrX 121247477 121247604 -41352326 - MER85 DNA T2_type 0 139 1 605 242 54 74 chrX 121248922 121249219 -41350711 + L1ME4a LINE L1 5727 6017 -104 385 295 98 40 chrX 121301543 121301716 -41298214 - MIR3 SINE MIR -6 202 20 203 184 0 0 chrX 121302477 121302515 -41297415 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1979 132 3 7 chrX 121303563 121303850 -41296080 - AluJb SINE Alu -13 299 14 322 339 0 32 chrX 121303927 121304051 -41295879 + MIR3 SINE MIR 5 124 -84 222 318 0 15 chrX 121304626 121304692 -41295238 - L2 LINE L2 -2 3270 3206 396 138 0 0 chrX 121305459 121305524 -41294406 + (GGA)n Simple_repeat Simple_repeat 1 65 0 456 275 11 49 chrX 121305867 121306096 -41293834 + MIR SINE MIR 8 222 -40 798 231 6 11 chrX 121307329 121307511 -41292419 - MIR SINE MIR -62 200 20 528 271 153 0 chrX 121308604 121308781 -41291149 - MIR SINE MIR -1 261 58 390 250 77 0 chrX 121308827 121308931 -41290999 - MIR SINE MIR -84 178 67 2124 116 0 0 chrX 121310520 121310813 -41289117 - AluY SINE Alu -18 293 1 377 310 140 15 chrX 121311211 121311408 -41288522 - MIR SINE MIR -25 237 16 461 269 172 0 chrX 121311423 121311557 -41288373 + MER5A DNA MER1_type 26 182 -7 300 143 0 0 chrX 121312735 121312791 -41287139 + (TCC)n Simple_repeat Simple_repeat 1 56 0 1023 137 0 0 chrX 121312867 121313013 -41286917 - LTR8 LTR ERV1 0 691 546 1358 105 0 43 chrX 121313013 121313222 -41286708 - HUERS-P1 LTR ERV1 -6063 200 1 580 102 69 0 chrX 121313375 121313710 -41286220 + (TA)n Simple_repeat Simple_repeat 1 358 0 667 246 0 0 chrX 121314667 121314785 -41285145 + FLAM_A SINE Alu 1 118 -15 251 91 0 23 chrX 121315458 121315502 -41284428 + (TG)n Simple_repeat Simple_repeat 2 44 0 256 330 44 22 chrX 121316073 121316164 -41283766 - L2 LINE L2 -7 3265 3173 502 312 0 8 chrX 121317795 121317920 -41282010 - MIR3 SINE MIR -30 178 55 1024 144 59 0 chrX 121318928 121319081 -41280849 + AluJb SINE Alu 136 297 -15 253 304 107 96 chrX 121320018 121320283 -41279647 - L2 LINE L2 -331 2982 2709 2342 105 0 0 chrX 121320283 121320596 -41279334 - AluSq SINE Alu 0 313 1 253 304 107 96 chrX 121320596 121320655 -41279275 - L2 LINE L2 -604 2709 2652 347 257 82 78 chrX 121320657 121320863 -41279067 - L2 LINE L2 -821 2493 2287 741 232 148 111 chrX 121323055 121323543 -41276387 - LTR33 LTR ERVL -15 506 1 811 269 94 36 chrX 121323780 121324088 -41275842 - MLT1K LTR MaLR -2 586 261 43672 52 1 1 chrX 121324099 121330054 -41269876 - L1PA5 LINE L1 -190 5964 13 4566 118 64 16 chrX 121330056 121330327 -41269603 + L1MA4A LINE L1 5516 5772 -531 342 0 0 0 chrX 121330327 121330365 -41269565 + (CA)n Simple_repeat Simple_repeat 1 38 0 4566 118 64 16 chrX 121330365 121330838 -41269092 + L1MA4A LINE L1 5772 6296 -7 921 280 12 12 chrX 121330864 121331114 -41268816 - MLT1K LTR MaLR -337 251 2 200 122 49 24 chrX 121331264 121331305 -41268625 + GA-rich Low_complexity Low_complexity 2 43 0 834 167 7 28 chrX 121331383 121331527 -41268403 + FLAM_C SINE Alu 2 142 -1 1226 179 88 20 chrX 121331571 121331912 -41268018 + L1MB7 LINE L1 4386 4749 -1397 864 227 0 0 chrX 121331915 121332078 -41267852 + FRAM SINE Alu 3 165 -11 1747 173 21 0 chrX 121332082 121332488 -41267442 + L1MB7 LINE L1 5023 5441 -733 * 1810 189 23 0 chrX 121332487 121332874 -41267056 - L1 LINE L1 -1125 5021 4626 1679 157 12 27 chrX 121332869 121333200 -41266730 + L1MA9 LINE L1 5468 5793 -519 * 243 0 0 0 chrX 121333201 121333228 -41266702 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 267 174 22 43 chrX 121333239 121333331 -41266599 - L1MC4 LINE L1 -1339 6703 6614 2819 155 19 11 chrX 121333347 121333875 -41266055 + L1MA9 LINE L1 5781 6312 0 1829 173 98 7 chrX 121333875 121334302 -41265628 + L1MB7 LINE L1 5440 5905 -279 864 174 104 124 chrX 121334338 121334552 -41265378 + MLT1A1 LTR MaLR 73 282 -83 2155 109 3 0 chrX 121334552 121334859 -41265071 - AluSp SINE Alu 0 308 1 864 174 104 124 chrX 121334859 121334942 -41264988 + MLT1A1 LTR MaLR 282 365 0 1880 163 23 4 chrX 121334976 121335602 -41264328 - L1M4 LINE L1 -557 5621 4986 483 166 83 51 chrX 121335600 121335757 -41264173 - L1M4 LINE L1 -1371 4775 4614 * 601 198 32 0 chrX 121335789 121335915 -41264015 - MER20 DNA MER1_type -1 218 89 1912 179 7 0 chrX 121335939 121336246 -41263684 + AluJo SINE Alu 3 311 -1 3709 171 55 69 chrX 121336274 121337097 -41262833 - MER21B LTR ERV1 -52 811 1 469 209 0 0 chrX 121337101 121337187 -41262743 - MER20 DNA MER1_type -133 86 1 2576 269 48 16 chrX 121337187 121338272 -41261658 - L1MEc LINE L1 -4339 2057 938 1725 163 245 37 chrX 121338352 121338867 -41261063 - LTR29 LTR ERV1 0 622 1 1042 351 48 15 chrX 121338917 121339671 -41260259 + ERVL LTR ERVL 3958 4786 -741 713 189 0 23 chrX 121339672 121339804 -41260126 + FLAM_C SINE Alu 3 131 -12 1060 209 38 0 chrX 121339960 121340171 -41259759 - MER20 DNA MER1_type 0 219 1 1545 282 48 10 chrX 121340393 121340889 -41259041 - REP3 LTR ERV -47 515 1 439 266 70 6 chrX 121341325 121341483 -41258447 + LTR16A LTR ERVL 23 190 -260 259 241 17 0 chrX 121341610 121341668 -41258262 + LTR16A LTR ERVL 392 450 0 1221 175 166 46 chrX 121341689 121342015 -41257915 - MLT1A1 LTR MaLR 0 365 1 2287 148 0 3 chrX 121342060 121342398 -41257532 - MER1B DNA MER1_type 0 337 1 518 286 0 6 chrX 121342413 121342588 -41257342 - L1MEc LINE L1 -2771 3444 3271 568 211 0 0 chrX 121342689 121342822 -41257108 - L1M4 LINE L1 -941 5205 5073 * 5542 239 76 54 chrX 121342820 121342916 -41257014 - L1MEc LINE L1 -4002 2394 2302 1799 184 0 0 chrX 121342916 121343210 -41256720 + AluJb SINE Alu 1 294 -18 5542 239 76 54 chrX 121343210 121343725 -41256205 - L1MEc LINE L1 -4094 2302 1800 240 111 0 0 chrX 121343725 121343761 -41256169 + (TA)n Simple_repeat Simple_repeat 2 37 0 5542 239 76 54 chrX 121343761 121345457 -41254473 - L1MEc LINE L1 -4596 1800 35 259 139 0 0 chrX 121345489 121345532 -41254398 - MLT2F LTR ERVL 0 663 621 * 1085 258 12 13 chrX 121345530 121345933 -41253997 - MLT2F LTR ERVL -213 450 1 557 303 102 24 chrX 121346134 121346520 -41253410 - L1M4 LINE L1 -1959 4187 3773 455 311 47 0 chrX 121346523 121346714 -41253216 - MLT1L LTR MaLR 0 615 416 1633 211 17 17 chrX 121346714 121347116 -41252814 + LTR52 LTR ERVL 1 402 -19 3003 161 17 11 chrX 121347124 121347651 -41252279 + LTR52-int LTR ERVL 3 532 -3024 2045 163 19 19 chrX 121347695 121348070 -41251860 - THE1C LTR MaLR 0 375 1 7867 117 47 7 chrX 121348070 121349322 -41250608 - THE1C-int LTR MaLR 0 1580 279 480 35 0 0 chrX 121349353 121349411 -41250519 + (CA)n Simple_repeat Simple_repeat 1 58 0 215 160 20 20 chrX 121349411 121349461 -41250469 + GA-rich Low_complexity Low_complexity 3 52 0 5983 256 66 61 chrX 121349501 121352027 -41247903 + LTR52-int LTR ERVL 1020 3556 0 2320 165 17 12 chrX 121352030 121352443 -41247487 + LTR52 LTR ERVL 4 418 -3 420 269 70 74 chrX 121352458 121352715 -41247215 - MLT1L LTR MaLR -221 394 139 308 346 72 7 chrX 121352833 121352986 -41246944 - L1M4 LINE L1 -2391 3755 3593 318 215 38 0 chrX 121352998 121353077 -41246853 - L1MEc LINE L1 -4341 2055 1974 987 269 37 127 chrX 121353362 121353602 -41246328 + L2 LINE L2 2119 2379 -935 781 171 8 0 chrX 121353602 121353731 -41246199 + FLAM_C SINE Alu 1 130 -3 987 269 37 127 chrX 121353731 121354186 -41245744 + L2 LINE L2 2379 2725 -589 254 50 25 0 chrX 121354186 121354226 -41245704 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 987 269 37 127 chrX 121354226 121354391 -41245539 + L2 LINE L2 2725 2903 -411 673 118 49 7 chrX 121354395 121354539 -41245391 + CT-rich Low_complexity Low_complexity 3 152 0 1792 144 3 23 chrX 121354552 121354858 -41245072 - AluJb SINE Alu -12 300 1 295 300 39 31 chrX 121354924 121355054 -41244876 + L2 LINE L2 3011 3141 -172 1889 152 0 23 chrX 121355054 121355357 -41244573 - AluJb SINE Alu -16 296 1 182 286 0 0 chrX 121356032 121356081 -41243849 - L2 LINE L2 -4 3309 3261 2462 77 0 3 chrX 121356170 121356482 -41243448 - AluSq SINE Alu -2 311 1 2394 77 0 13 chrX 121356770 121357083 -41242847 - AluY SINE Alu 0 311 3 691 149 236 7 chrX 121358415 121358563 -41241367 + MER5A DNA MER1_type 3 184 -5 431 289 0 10 chrX 121358842 121358946 -41240984 + MIR SINE MIR 20 122 -140 330 300 183 8 chrX 121359163 121359283 -41240647 - MIR SINE MIR -117 145 5 252 246 0 0 chrX 121360161 121360218 -41239712 - L1ME4a LINE L1 -87 6034 5978 253 353 26 0 chrX 121360496 121360652 -41239278 - L1ME4a LINE L1 -238 5883 5724 251 284 104 38 chrX 121360673 121360763 -41239167 - L1ME4a LINE L1 -598 5523 5440 1413 121 39 22 chrX 121360763 121360995 -41238935 + MER46A DNA MER2_type 1 236 0 251 284 104 38 chrX 121360995 121361087 -41238843 - L1ME4a LINE L1 -681 5440 5329 346 312 74 83 chrX 121361155 121361488 -41238442 - L1ME4a LINE L1 -895 5251 4921 1911 147 0 35 chrX 121361488 121361800 -41238130 - AluJo SINE Alu -11 301 1 346 312 74 83 chrX 121361800 121361886 -41238044 - L1ME4a LINE L1 -1225 4921 4836 181 203 0 34 chrX 121361886 121361945 -41237985 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 2417 78 3 0 chrX 121362227 121362535 -41237395 - AluY SINE Alu 0 311 3 1094 89 0 64 chrX 121362701 121362858 -41237072 + AluSq/x SINE Alu 1 147 -166 2052 81 40 40 chrX 121362982 121363278 -41236652 + AluSx SINE Alu 8 303 -9 629 246 126 9 chrX 121363828 121364043 -41235887 + MIR SINE MIR 9 248 -14 303 333 0 0 chrX 121367925 121368015 -41231915 - L1MC4 LINE L1 -1339 6703 6614 * 341 245 54 68 chrX 121367937 121368084 -41231846 + L1MC4 LINE L1 6614 6758 -1284 618 225 140 15 chrX 121368144 121368344 -41231586 + MIR SINE MIR 32 256 -6 411 343 36 72 chrX 121370811 121371282 -41228648 - L2 LINE L2 -87 3185 2730 829 183 0 0 chrX 121371659 121371790 -41228140 + FLAM_A SINE Alu 1 131 -2 1937 154 0 16 chrX 121373692 121374004 -41225926 + AluSx SINE Alu 1 307 -5 236 242 45 0 chrX 121374526 121374592 -41225338 - MIR SINE MIR -129 133 65 378 0 0 0 chrX 121374975 121375017 -41224913 + (CA)n Simple_repeat Simple_repeat 2 43 0 219 36 0 0 chrX 121375017 121375045 -41224885 + (TC)n Simple_repeat Simple_repeat 1 28 0 227 287 51 41 chrX 121375045 121375146 -41224784 + MER5A DNA MER1_type 69 161 -17 224 233 0 0 chrX 121376135 121376178 -41223752 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 2195 95 0 3 chrX 121376681 121377002 -41222928 - AluSq SINE Alu 0 320 1 360 0 0 0 chrX 121377538 121377578 -41222352 + (CA)n Simple_repeat Simple_repeat 1 40 0 230 267 0 0 chrX 121378348 121378408 -41221522 + (TA)n Simple_repeat Simple_repeat 1 60 0 311 181 49 21 chrX 121378432 121378576 -41221354 + (TA)n Simple_repeat Simple_repeat 2 149 0 1282 177 191 0 chrX 121378769 121379052 -41220878 + MER58B DNA MER1_type 1 337 -4 1876 136 48 14 chrX 121380802 121381097 -41218833 + AluJb SINE Alu 1 305 -7 206 180 202 11 chrX 121381771 121381860 -41218070 + L2 LINE L2 2563 2668 -646 444 278 0 0 chrX 121382251 121382359 -41217571 - MIR SINE MIR -18 244 137 1794 135 8 0 chrX 121382593 121382853 -41217077 + AluY SINE Alu 49 310 -1 380 127 0 38 chrX 121382853 121382932 -41216998 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 275 237 66 0 chrX 121384647 121384723 -41215207 + MIR SINE MIR 182 262 0 2237 115 0 7 chrX 121385969 121386273 -41213657 + AluSx SINE Alu 1 302 -10 2279 73 0 7 chrX 121386274 121386585 -41213345 + AluY SINE Alu 3 311 0 2374 104 3 0 chrX 121388178 121388487 -41211443 + AluSq SINE Alu 1 310 -3 196 143 36 0 chrX 121389678 121389734 -41210196 + (TA)n Simple_repeat Simple_repeat 1 58 0 2130 113 32 0 chrX 121389782 121390064 -41209866 - AluSx SINE Alu -21 291 1 827 139 39 8 chrX 121390164 121390293 -41209637 - FLAM_C SINE Alu 0 133 1 2109 102 0 4 chrX 121390336 121390611 -41209319 - AluSx SINE Alu -38 274 1 239 339 64 77 chrX 121390828 121391203 -41208727 + L2 LINE L2 2558 2927 -387 1795 156 6 25 chrX 121391385 121391699 -41208231 - AluJb SINE Alu -4 308 1 2317 99 0 0 chrX 121392373 121392675 -41207255 + AluSg SINE Alu 1 302 -8 1624 181 0 4 chrX 121392810 121393075 -41206855 + Tigger7 DNA MER2_type 4 267 -2220 442 226 0 57 chrX 121393080 121393186 -41206744 + Tigger7 DNA MER2_type 2387 2486 -1 773 152 0 18 chrX 121393315 121393427 -41206503 + FLAM_A SINE Alu 1 110 -32 582 279 56 35 chrX 121393523 121393720 -41206210 + MIR SINE MIR 11 211 -51 258 289 21 0 chrX 121393737 121393834 -41206096 - L1MC4 LINE L1 -1332 6710 6612 239 170 0 151 chrX 121393784 121393890 -41206040 + L1MC4 LINE L1 6614 6703 -1339 * 232 174 0 0 chrX 121393893 121393939 -41205991 - LTR66 LTR ERVL -168 442 397 284 143 0 0 chrX 121394756 121394805 -41205125 - MADE1 DNA Mariner 0 80 32 401 62 231 0 chrX 121394809 121394874 -41205056 + MADE1 DNA Mariner 1 80 0 1734 163 50 7 chrX 121394882 121395164 -41204766 - AluJb SINE Alu -16 296 3 33 56 0 0 chrX 121395623 121395677 -41204253 + AT_rich Low_complexity Low_complexity 1 54 0 336 176 0 0 chrX 121395732 121395800 -41204130 + (TA)n Simple_repeat Simple_repeat 1 68 0 315 266 75 72 chrX 121398086 121398364 -41201566 + LTR67 LTR ERVL 18 296 -261 312 188 158 20 chrX 121398537 121398638 -41201292 - L1ME3A LINE L1 -18 6152 6038 1311 122 34 10 chrX 121398638 121398843 -41201087 - Tigger2a DNA MER2_type -31 413 204 2174 101 28 0 chrX 121398844 121399130 -41200800 + AluSx SINE Alu 1 294 -18 675 87 5 23 chrX 121399137 121399253 -41200677 - Tigger2a DNA MER2_type -325 109 2 1553 214 63 39 chrX 121399261 121399514 -41200416 - L1ME3A LINE L1 -142 6028 5760 2213 123 0 9 chrX 121399514 121399830 -41200100 + AluSq SINE Alu 1 313 0 1553 214 63 39 chrX 121399830 121399988 -41199942 - L1ME3A LINE L1 -410 5760 5607 382 165 24 24 chrX 121399993 121400078 -41199852 + LTR67 LTR ERVL 471 555 -2 1757 166 14 3 chrX 121401086 121401382 -41198548 + AluJb SINE Alu 1 299 -13 314 303 10 10 chrX 121401587 121401686 -41198244 + MIR SINE MIR 5 103 -159 181 304 0 0 chrX 121403162 121403208 -41196722 + L2 LINE L2 3175 3220 -52 247 274 111 51 chrX 121403217 121403334 -41196596 - L2 LINE L2 -9 3263 3140 973 240 31 90 chrX 121403414 121403595 -41196335 + L2 LINE L2 2967 3119 -194 2093 99 33 0 chrX 121403595 121403888 -41196042 - AluSq SINE Alu 0 302 1 973 240 31 90 chrX 121403888 121404059 -41195871 + L2 LINE L2 3119 3299 -14 232 222 42 69 chrX 121404571 121404643 -41195287 + L2 LINE L2 3234 3303 -10 235 333 0 35 chrX 121405358 121405445 -41194485 + L3 LINE CR1 1450 1533 -44 659 172 67 0 chrX 121405445 121405579 -41194351 - Charlie1 DNA MER1_type 0 2761 2619 576 148 0 0 chrX 121405584 121405672 -41194258 - Charlie1 DNA MER1_type -2570 191 104 2419 82 3 0 chrX 121405683 121405986 -41193944 - AluSq SINE Alu -8 305 2 1144 142 27 6 chrX 121406108 121406291 -41193639 - MER20 DNA MER1_type 0 219 33 183 42 0 0 chrX 121406592 121406616 -41193314 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2380 80 0 0 chrX 121406619 121406908 -41193022 - AluSq SINE Alu -24 289 1 192 77 0 0 chrX 121408029 121408055 -41191875 + (CGG)n Simple_repeat Simple_repeat 2 27 0 6827 51 38 0 chrX 121408355 121409404 -41190526 - L1PA8 LINE L1 0 6172 5049 240 353 60 9 chrX 121409620 121409736 -41190194 - MIR3 SINE MIR -5 203 82 565 241 15 65 chrX 121410008 121410207 -41189723 - MER5A DNA MER1_type 0 189 1 427 329 58 7 chrX 121410799 121410936 -41188994 + MIR3 SINE MIR 16 159 -49 600 213 14 35 chrX 121410938 121411079 -41188851 - MER5B DNA MER1_type -3 175 38 1925 150 7 0 chrX 121411173 121411459 -41188471 + AluJb SINE Alu 1 288 -24 932 176 0 12 chrX 121411485 121411655 -41188275 + AluJb SINE Alu 135 302 -10 2028 148 0 3 chrX 121412502 121412813 -41187117 + AluSx SINE Alu 1 310 -2 200 273 0 30 chrX 121412907 121412973 -41186957 + CT-rich Low_complexity Low_complexity 3 66 0 807 154 81 13 chrX 121413210 121413359 -41186571 - MER5A DNA MER1_type -22 167 9 2351 88 0 34 chrX 121413427 121413747 -41186183 + AluSx SINE Alu 1 309 -3 22 70 0 0 chrX 121413822 121413865 -41186065 + AT_rich Low_complexity Low_complexity 1 43 0 1395 99 40 20 chrX 121413871 121413990 -41185940 + AluSx SINE Alu 1 127 -185 232 26 26 26 chrX 121413990 121414028 -41185902 + (TAA)n Simple_repeat Simple_repeat 1 38 0 1395 99 40 20 chrX 121414028 121414110 -41185820 + AluSx SINE Alu 127 206 -106 269 314 75 6 chrX 121414254 121414413 -41185517 - L1MC4a LINE L1 -1869 5939 5770 368 54 0 18 chrX 121414532 121414588 -41185342 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 1568 12 0 0 chrX 121414588 121414754 -41185176 - SVA Other Other -18 1368 1203 2211 108 10 10 chrX 121414894 121415201 -41184729 - AluSq SINE Alu -6 307 1 195 296 0 19 chrX 121415202 121415256 -41184674 + MIR SINE MIR 70 122 -86 479 258 0 47 chrX 121415355 121415375 -41184555 - MIR SINE MIR -135 127 108 2318 112 0 0 chrX 121415375 121415678 -41184252 + AluSx SINE Alu 1 303 -9 479 258 0 47 chrX 121415678 121415785 -41184145 - MIR SINE MIR -154 108 6 282 344 172 37 chrX 121415833 121416374 -41183556 + L2 LINE L2 2287 2900 -414 1120 253 55 126 chrX 121416400 121416859 -41183071 + MLT1L LTR MaLR 1 520 -95 2043 169 35 25 chrX 121416859 121417227 -41182703 + MLT1A2 LTR MaLR 1 372 -2 1120 253 55 126 chrX 121417227 121417316 -41182614 + MLT1L LTR MaLR 520 614 -1 531 163 0 20 chrX 121417883 121417981 -41181949 - MER5B DNA MER1_type 0 178 83 1220 80 7 0 chrX 121417983 121418156 -41181774 - AluSq SINE Alu 0 306 133 383 286 0 0 chrX 121418156 121418247 -41181683 - MER5B DNA MER1_type -87 91 1 496 242 88 50 chrX 121418276 121418458 -41181472 - MER5A DNA MER1_type 0 189 1 1134 293 77 82 chrX 121418688 121418989 -41180941 + L3 LINE CR1 687 988 -589 1690 152 50 3 chrX 121418989 121419272 -41180658 + AluSg SINE Alu 1 296 -14 1134 293 77 82 chrX 121419272 121419853 -41180077 + L3 LINE CR1 988 1565 -12 2340 112 0 0 chrX 121419924 121420236 -41179694 + AluSq SINE Alu 1 312 -1 2528 74 0 0 chrX 121420236 121420546 -41179384 + AluY SINE Alu 1 310 -1 1183 184 73 107 chrX 121420700 121421113 -41178817 + MLT1D LTR MaLR 3 401 -104 2071 129 0 3 chrX 121421241 121421566 -41178364 - AluSx SINE Alu 0 324 1 1346 243 30 69 chrX 121421673 121422138 -41177792 + L2 LINE L2 2867 3313 0 2249 101 0 7 chrX 121422749 121423081 -41176849 - AluSx SINE Alu 0 332 3 577 244 85 90 chrX 121423110 121423499 -41176431 + L1ME4a LINE L1 5721 6107 -14 1967 110 40 17 chrX 121423516 121423816 -41176114 + AluSx SINE Alu 1 307 -5 360 225 12 0 chrX 121423988 121424068 -41175862 + L1MA8 LINE L1 6047 6127 -164 1122 161 10 10 chrX 121424069 121424262 -41175668 + AluJo SINE Alu 1 193 -119 347 186 0 0 chrX 121425456 121425526 -41174404 + L1MA10 LINE L1 6265 6334 0 298 344 16 8 chrX 121425854 121425976 -41173954 + MIR SINE MIR 9 131 -131 2394 104 0 0 chrX 121426211 121426520 -41173410 + AluSq SINE Alu 1 309 -4 214 267 23 35 chrX 121426540 121426626 -41173304 + MIR SINE MIR 175 259 -3 207 263 0 50 chrX 121426706 121426786 -41173144 + MIR SINE MIR 157 232 -30 644 311 140 12 chrX 121427087 121427400 -41172530 - LTR16A LTR ERVL 0 450 74 2248 107 7 0 chrX 121427400 121427700 -41172230 - AluSg SINE Alu -8 302 1 644 311 140 12 chrX 121427700 121427785 -41172145 - LTR16A LTR ERVL -376 74 1 262 270 242 22 chrX 121427978 121428156 -41171774 - L2 LINE L2 -1134 2180 1964 1543 179 35 25 chrX 121428252 121428556 -41171374 + AluJb SINE Alu 1 312 0 260 246 0 18 chrX 121428584 121428641 -41171289 - MER94 DNA DNA -1 133 78 3771 40 0 2 chrX 121429071 121429527 -41170403 + L1PA8 LINE L1 5726 6180 0 1019 183 0 0 chrX 121429807 121429960 -41169970 + FRAM SINE Alu 3 155 -11 1826 128 22 0 chrX 121430461 121430734 -41169196 + MER49 LTR ERV1 1 279 -644 955 115 40 14 chrX 121430731 121430879 -41169051 - MER49 LTR ERV1 -136 787 636 * 3833 110 22 62 chrX 121430870 121431182 -41168748 + MER49 LTR ERV1 307 630 -293 2212 106 0 0 chrX 121431182 121431492 -41168438 + AluSx SINE Alu 1 310 0 3833 110 22 62 chrX 121431492 121431625 -41168305 + MER49 LTR ERV1 630 767 -156 2381 49 0 11 chrX 121431625 121431912 -41168018 - AluY SINE Alu -11 300 17 3833 110 22 62 chrX 121431912 121432098 -41167832 + MER49 LTR ERV1 767 915 -8 1317 207 4 22 chrX 121432353 121432628 -41167302 + AluJb SINE Alu 15 284 -28 243 0 0 0 chrX 121432628 121432655 -41167275 + (T)n Simple_repeat Simple_repeat 1 27 0 1924 109 95 0 chrX 121432655 121432929 -41167001 + AluSx SINE Alu 2 301 -11 1526 186 54 136 chrX 121433040 121433578 -41166352 - MER114 LTR ERV -1 647 179 1499 189 0 57 chrX 121433578 121433879 -41166051 + AluJo SINE Alu 11 294 -18 1526 186 54 136 chrX 121433879 121434045 -41165885 - MER114 LTR ERV -469 179 1 830 162 15 0 chrX 121434064 121434200 -41165730 - AluJb SINE Alu -174 138 1 2063 164 0 0 chrX 121434263 121434575 -41165355 + AluSx SINE Alu 1 312 0 381 224 61 10 chrX 121434948 121435046 -41164884 + MIR SINE MIR 32 134 -128 2268 108 0 35 chrX 121435052 121435368 -41164562 - AluSx SINE Alu -7 305 1 709 85 0 0 chrX 121435369 121435463 -41164467 - AluSq/x SINE Alu -176 136 43 462 282 7 21 chrX 121435464 121435606 -41164324 + MIR SINE MIR 122 261 -1 1787 97 0 0 chrX 121435795 121436021 -41163909 - AluSg/x SINE Alu 0 312 87 250 248 57 9 chrX 121436171 121436276 -41163654 - MER103 DNA DNA -51 115 6 331 299 119 8 chrX 121436355 121436489 -41163441 - MIR3 SINE MIR -41 167 19 2487 62 7 0 chrX 121436618 121436924 -41163006 - AluSx SINE Alu -4 308 1 2017 138 7 0 chrX 121437297 121437595 -41162335 + AluSx SINE Alu 1 300 -12 203 245 43 0 chrX 121437674 121437768 -41162162 + (TA)n Simple_repeat Simple_repeat 1 98 0 1265 169 13 27 chrX 121438035 121438260 -41161670 - AluJo SINE Alu -90 222 1 381 257 50 10 chrX 121438264 121438365 -41161565 - MIR SINE MIR -62 146 42 818 323 27 34 chrX 121438391 121438782 -41161148 + L2 LINE L2 2782 3246 -26 1802 145 6 69 chrX 121439047 121439197 -41160733 + AluJo SINE Alu 1 120 -192 2368 77 7 0 chrX 121439197 121439494 -41160436 + AluSg SINE Alu 1 299 -11 1802 145 6 69 chrX 121439494 121439675 -41160255 + AluJo SINE Alu 120 311 -1 559 270 61 51 chrX 121440173 121440205 -41159725 - MIR SINE MIR -12 250 220 207 0 0 0 chrX 121440205 121440228 -41159702 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2161 106 7 0 chrX 121440234 121440518 -41159412 - AluSx SINE Alu -26 286 1 559 270 61 51 chrX 121440518 121440674 -41159256 - MIR SINE MIR -46 216 53 226 300 98 25 chrX 121440712 121440881 -41159049 - MIR SINE MIR -58 150 20 859 189 114 9 chrX 121441029 121441257 -41158673 + L1MEc LINE L1 1686 1937 -4459 658 178 15 15 chrX 121441257 121441392 -41158538 + MSTC LTR MaLR 1 135 -293 2069 140 0 0 chrX 121441408 121441708 -41158222 + AluJb SINE Alu 5 304 -8 634 161 8 8 chrX 121441708 121441838 -41158092 + L1MEc LINE L1 2021 2150 -4246 3651 219 55 59 chrX 121441839 121441883 -41158047 - L1M4 LINE L1 -1003 5143 5100 399 103 52 0 chrX 121441883 121441941 -41157989 - U7 snRNA snRNA -1 62 2 3651 219 55 59 chrX 121441941 121443226 -41156704 - L1M4 LINE L1 -1046 5100 3820 839 138 0 0 chrX 121443240 121443363 -41156567 + Tigger1 DNA MER2_type 26 148 -2270 829 88 18 231 chrX 121443364 121443637 -41156293 + Tigger1 DNA MER2_type 2204 2418 0 1868 212 83 24 chrX 121443640 121444131 -41155799 + MLT2B1 LTR ERVL 1 520 0 492 231 0 8 chrX 121444135 121444256 -41155674 - L1M4 LINE L1 -2331 3815 3696 921 98 11 38 chrX 121444270 121444453 -41155477 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 775 219 74 43 chrX 121444468 121444793 -41155137 - L1M4 LINE L1 -2481 3665 3331 6830 93 27 1 chrX 121444794 121445886 -41154044 - L1MA1 LINE L1 0 6302 5185 42 48 0 0 chrX 121445920 121445983 -41153947 + AT_rich Low_complexity Low_complexity 1 63 0 796 286 103 18 chrX 121445983 121446655 -41153275 - L1ME3 LINE L1 -238 5924 5198 1981 200 52 18 chrX 121446849 121447363 -41152567 - L1ME1 LINE L1 -17 6149 5618 2328 98 0 0 chrX 121447649 121447954 -41151976 + AluSx SINE Alu 1 305 -7 2780 10 0 0 chrX 121448316 121448619 -41151311 + AluYa5 SINE Alu 1 303 -8 23 33 0 0 chrX 121448652 121448682 -41151248 + AT_rich Low_complexity Low_complexity 1 30 0 2290 100 0 0 chrX 121448945 121449235 -41150695 - AluSg SINE Alu -20 290 1 2228 102 7 0 chrX 121449382 121449675 -41150255 + AluSx SINE Alu 1 295 -17 748 198 11 92 chrX 121449867 121450074 -41149856 + L1MB5 LINE L1 2025 2204 -4180 726 180 0 23 chrX 121450074 121450202 -41149728 + FLAM_A SINE Alu 1 125 -8 748 198 11 92 chrX 121450202 121450277 -41149653 + L1MB5 LINE L1 2204 2284 -4100 720 110 84 39 chrX 121450279 121450325 -41149605 + MER34C LTR ERV1 423 465 -120 3109 153 54 2 chrX 121450325 121450847 -41149083 + MER44D DNA MER2_type 2 605 0 720 110 84 39 chrX 121450847 121450954 -41148976 + MER34C LTR ERV1 465 583 -2 329 248 47 65 chrX 121450961 121451175 -41148755 + MER34C-int LTR ERV1 3 212 -6119 294 289 0 0 chrX 121451272 121451348 -41148582 + MER34C-int LTR ERV1 566 641 -6160 324 226 55 103 chrX 121451428 121451574 -41148356 + MER34C-int LTR ERV1 1370 1508 -4823 2730 134 20 67 chrX 121451587 121451889 -41148041 + LTR26B LTR ERV1 1 316 -215 1669 181 4 7 chrX 121451889 121452170 -41147760 - AluJo SINE Alu -19 293 14 2730 134 20 67 chrX 121452170 121452358 -41147572 + LTR26B LTR ERV1 316 450 -81 2298 100 0 3 chrX 121452358 121452659 -41147271 + AluSx SINE Alu 1 300 -12 2730 134 20 67 chrX 121452659 121452738 -41147192 + LTR26B LTR ERV1 450 531 0 2470 162 87 21 chrX 121452786 121453318 -41146612 + LTR26B-int LTR ERV1 299 865 -4071 236 228 35 0 chrX 121453410 121453467 -41146463 + LTR68 LTR ERV1 396 454 -286 1421 148 112 74 chrX 121453501 121453805 -41146125 + LTR26B-int LTR ERV1 883 1174 -3762 1516 174 66 14 chrX 121453805 121454092 -41145838 + AluJo SINE Alu 1 302 -10 2126 129 7 0 chrX 121454093 121454402 -41145528 + AluSx SINE Alu 2 312 0 1421 148 112 74 chrX 121454402 121454743 -41145187 + LTR26B-int LTR ERV1 1173 1582 -3354 2179 203 49 12 chrX 121454753 121455509 -41144421 + L1MB5 LINE L1 2273 3063 -3319 1725 163 54 7 chrX 121455509 121455804 -41144126 + AluJo SINE Alu 1 309 -3 4582 212 41 56 chrX 121455805 121455899 -41144031 + L1MB5 LINE L1 3498 3592 -2790 1751 159 20 27 chrX 121455899 121456195 -41143735 + AluJo SINE Alu 1 294 -18 4582 212 41 56 chrX 121456195 121456248 -41143682 + L1MB5 LINE L1 3592 3644 -2738 1887 107 0 8 chrX 121456248 121456510 -41143420 + AluSc SINE Alu 48 307 -2 4582 212 41 56 chrX 121456510 121457134 -41142796 + L1MB5 LINE L1 3644 4275 -2107 1736 179 10 3 chrX 121457134 121457442 -41142488 + AluJb SINE Alu 1 310 -2 4582 212 41 56 chrX 121457442 121458265 -41141665 + L1MB5 LINE L1 4275 5071 -1311 2061 72 0 0 chrX 121458262 121458540 -41141390 - L1P LINE L1 -5111 1035 758 * 12735 40 5 2 chrX 121458537 121460949 -41138981 + L1PA5 LINE L1 3716 6134 -20 198 0 0 0 chrX 121460951 121460973 -41138957 + (TA)n Simple_repeat Simple_repeat 1 22 0 3972 169 77 37 chrX 121460976 121462279 -41137651 + L1MB5 LINE L1 5060 6410 0 27 0 0 0 chrX 121465812 121465839 -41134091 + AT_rich Low_complexity Low_complexity 1 27 0 2256 105 7 0 chrX 121465905 121466201 -41133729 - AluSx SINE Alu -12 300 3 606 163 0 119 chrX 121466239 121466399 -41133531 - FLAM_C SINE Alu 0 143 3 1527 118 125 0 chrX 121466403 121466675 -41133255 - MER46B DNA MER2_type -55 181 1 2156 124 0 10 chrX 121466970 121467269 -41132661 + AluSx SINE Alu 1 296 -16 2157 115 11 0 chrX 121467289 121467575 -41132355 + AluSg SINE Alu 1 289 -21 689 267 22 0 chrX 121468109 121468289 -41131641 - MIR SINE MIR -6 256 73 24 32 0 0 chrX 121469567 121469598 -41130332 + AT_rich Low_complexity Low_complexity 1 31 0 2145 114 3 0 chrX 121469887 121470176 -41129754 + AluSg SINE Alu 1 290 -20 2259 115 7 0 chrX 121470301 121470605 -41129325 - AluSx SINE Alu -6 306 1 938 280 90 9 chrX 121470650 121471093 -41128837 + L1ME4a LINE L1 5448 5926 -195 180 311 16 66 chrX 121471496 121471618 -41128312 + L2 LINE L2 1839 1954 -1360 973 68 0 0 chrX 121471624 121471742 -41128188 - AluJb SINE Alu -194 118 1 270 321 181 29 chrX 121471840 121472183 -41127747 + L2 LINE L2 2301 2695 -619 202 278 124 21 chrX 121472426 121472523 -41127407 + L2 LINE L2 2978 3084 -188 2356 78 0 0 chrX 121472631 121472926 -41127004 + AluSg SINE Alu 1 295 -15 1686 155 65 21 chrX 121472933 121473223 -41126707 + AluJo SINE Alu 1 303 -9 916 206 0 0 chrX 121473899 121474064 -41125866 + FRAM SINE Alu 6 170 -6 2336 99 0 10 chrX 121474268 121474580 -41125350 + AluSc SINE Alu 1 309 0 310 329 145 27 chrX 121474906 121475271 -41124659 + L2 LINE L2 1869 2276 -1038 738 150 0 25 chrX 121475560 121475680 -41124250 + FLAM_C SINE Alu 2 118 -15 304 349 19 0 chrX 121478360 121478466 -41121464 - MIR SINE MIR -147 115 8 739 192 8 0 chrX 121479527 121479647 -41120283 - FLAM_A SINE Alu -12 121 1 2291 99 3 3 chrX 121480065 121480358 -41119572 + AluSx SINE Alu 3 295 -17 717 155 0 0 chrX 121480792 121480908 -41119022 + FLAM_C SINE Alu 1 116 -17 26 64 0 0 chrX 121481210 121481257 -41118673 + AT_rich Low_complexity Low_complexity 1 47 0 761 130 0 24 chrX 121481449 121481572 -41118358 - FLAM_A SINE Alu -5 137 18 342 0 0 0 chrX 121482341 121482379 -41117551 + (CA)n Simple_repeat Simple_repeat 2 39 0 181 256 0 0 chrX 121483075 121483114 -41116816 - L2 LINE L2 -2 3270 3232 458 245 0 0 chrX 121483160 121483262 -41116668 + U13 snRNA snRNA 1 102 -2 1066 136 18 12 chrX 121485064 121485233 -41114697 + L1PB1 LINE L1 5981 6150 -1 23 33 0 0 chrX 121485233 121485263 -41114667 + AT_rich Low_complexity Low_complexity 1 30 0 586 170 0 0 chrX 121486294 121486388 -41113542 + MER46A DNA MER2_type 1 94 -142 1750 169 17 20 chrX 121486393 121486487 -41113443 + AluJo SINE Alu 1 94 -218 3419 75 18 16 chrX 121486487 121486930 -41113000 + MLT2A1 LTR ERVL 1 444 0 1750 169 17 20 chrX 121486930 121487130 -41112800 + AluJo SINE Alu 94 294 -18 2319 115 0 0 chrX 121487397 121487709 -41112221 + AluSx SINE Alu 1 312 0 2008 128 30 0 chrX 121488117 121488413 -41111517 + AluSg SINE Alu 1 305 -5 1797 143 35 11 chrX 121490049 121490335 -41109595 - AluSx SINE Alu -9 303 11 646 225 115 5 chrX 121490428 121490628 -41109302 + MER112 DNA MER1_type 1 222 -38 256 200 48 16 chrX 121490861 121490986 -41108944 + (TTTA)n Simple_repeat Simple_repeat 1 129 0 1618 124 0 0 chrX 121491067 121491293 -41108637 - AluSx SINE Alu -86 226 1 28 0 0 0 chrX 121491919 121491947 -41107983 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chrX 121492307 121492334 -41107596 + AT_rich Low_complexity Low_complexity 1 27 0 792 142 0 25 chrX 121492468 121492588 -41107342 + FLAM_C SINE Alu 2 118 -25 180 0 0 0 chrX 121492591 121492611 -41107319 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 530 262 92 34 chrX 121493014 121493220 -41106710 - MIR SINE MIR -30 232 15 23 33 0 0 chrX 121494159 121494189 -41105741 + AT_rich Low_complexity Low_complexity 1 30 0 459 224 52 115 chrX 121494382 121494505 -41105425 + MIR SINE MIR 20 128 -134 2366 96 0 0 chrX 121494505 121494807 -41105123 + AluSx SINE Alu 1 302 -10 459 224 52 115 chrX 121494807 121494875 -41105055 + MIR SINE MIR 128 199 -63 213 340 150 0 chrX 121495123 121495223 -41104707 - MIR SINE MIR -26 236 122 375 309 18 94 chrX 121495290 121495403 -41104527 - MIR SINE MIR -50 212 123 820 167 0 36 chrX 121495403 121495541 -41104389 + FLAM_C SINE Alu 1 133 0 375 309 18 94 chrX 121495541 121495650 -41104280 - MIR SINE MIR -139 123 7 2466 71 3 0 chrX 121495759 121496056 -41103874 - AluSp SINE Alu -15 298 1 553 225 189 21 chrX 121497230 121497421 -41102509 - MIR SINE MIR -5 257 35 180 0 0 0 chrX 121499107 121499127 -41100803 + (GGA)n Simple_repeat Simple_repeat 2 21 0 186 133 0 0 chrX 121499329 121499359 -41100571 + (CTG)n Simple_repeat Simple_repeat 1 30 0 213 284 0 30 chrX 121500283 121500350 -41099580 + G-rich Low_complexity Low_complexity 6 70 0 313 287 0 37 chrX 121500389 121500525 -41099405 + G-rich Low_complexity Low_complexity 6 136 0 202 308 108 80 chrX 121501318 121501669 -41098261 - L2 LINE L2 -81 3191 2831 1766 132 4 18 chrX 121502073 121502353 -41097577 - AluSx SINE Alu -7 305 30 1831 151 7 0 chrX 121502866 121503138 -41096792 + AluSx SINE Alu 1 274 -38 190 0 67 0 chrX 121503144 121503174 -41096756 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 2074 125 0 0 chrX 121503179 121503466 -41096464 + AluSx SINE Alu 11 297 -15 226 65 22 22 chrX 121504191 121504237 -41095693 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 2089 122 44 0 chrX 121504247 121504541 -41095389 + AluSx SINE Alu 1 307 -5 2473 69 0 10 chrX 121504568 121504873 -41095057 - AluY SINE Alu -9 302 1 501 115 0 0 chrX 121505168 121505246 -41094684 + (TA)n Simple_repeat Simple_repeat 2 79 0 2339 86 3 0 chrX 121505251 121505542 -41094388 - AluSp SINE Alu -21 292 1 2309 108 0 10 chrX 121505964 121506270 -41093660 - AluSx SINE Alu -7 305 3 447 199 42 126 chrX 121506290 121506436 -41093494 + MER5B DNA MER1_type 1 129 -49 1661 132 47 37 chrX 121506436 121506732 -41093198 + AluJo SINE Alu 1 299 -13 447 199 42 126 chrX 121506732 121506776 -41093154 + MER5B DNA MER1_type 129 175 -3 22 0 0 0 chrX 121507212 121507234 -41092696 + AT_rich Low_complexity Low_complexity 1 22 0 230 229 12 60 chrX 121507413 121507496 -41092434 - L2 LINE L2 -6 3307 3229 342 250 44 37 chrX 121507523 121507659 -41092271 - MIR SINE MIR -46 216 80 2553 50 0 0 chrX 121508203 121508505 -41091425 - AluY SINE Alu -9 302 1 208 282 36 150 chrX 121508546 121508826 -41091104 - L2 LINE L2 -144 3128 2881 1112 223 13 13 chrX 121509174 121509398 -41090532 + MER58A DNA MER1_type 1 224 0 511 249 76 16 chrX 121509515 121509734 -41090196 + L1ME3A LINE L1 5744 5968 -194 786 136 76 0 chrX 121509756 121509874 -41090056 + FLAM_A SINE Alu 1 127 -6 22 70 0 0 chrX 121510121 121510164 -41089766 + AT_rich Low_complexity Low_complexity 1 43 0 407 323 12 66 chrX 121510467 121510532 -41089398 - L2 LINE L2 -360 2954 2887 934 198 7 155 chrX 121510532 121510810 -41089120 - MER8 DNA MER2_type 0 239 3 407 323 12 66 chrX 121510810 121511001 -41088929 - L2 LINE L2 -427 2887 2712 2201 112 13 13 chrX 121511027 121511340 -41088590 + AluSq SINE Alu 1 313 0 368 263 46 7 chrX 121511490 121511642 -41088288 - L1MC4a LINE L1 -1868 5940 5783 237 218 54 88 chrX 121511957 121512104 -41087826 - L1ME4a LINE L1 -118 6003 5862 1685 195 44 3 chrX 121562110 121562495 -41037435 + L1MA1 LINE L1 4070 4470 -1676 2033 128 0 17 chrX 121562497 121562795 -41037135 + AluSg SINE Alu 1 293 -17 6821 104 11 22 chrX 121562796 121563925 -41036005 + L1MA1 LINE L1 4985 6099 -203 2360 126 19 6 chrX 121563925 121564290 -41035640 + THE1C LTR MaLR 5 374 -1 6821 104 11 22 chrX 121564290 121564492 -41035438 + L1MA1 LINE L1 6099 6302 0 1672 193 7 13 chrX 121565007 121565307 -41034623 + AluJb SINE Alu 1 298 -14 1523 169 51 4 chrX 121565448 121565559 -41034371 + AluJo SINE Alu 5 109 -203 201 39 0 0 chrX 121565559 121565585 -41034345 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1523 169 51 4 chrX 121565585 121565746 -41034184 + AluJo SINE Alu 109 290 -22 744 153 66 38 chrX 121565790 121565973 -41033957 - MER53 DNA DNA -1 188 1 22 35 0 0 chrX 121568460 121568489 -41031441 + AT_rich Low_complexity Low_complexity 1 29 0 543 210 62 87 chrX 121568754 121568780 -41031150 - L2 LINE L2 0 3313 3288 2459 77 0 0 chrX 121568780 121569091 -41030839 + AluSq SINE Alu 2 312 -1 543 210 62 87 chrX 121569091 121569259 -41030671 - L2 LINE L2 -25 3288 3124 1403 133 78 0 chrX 121569485 121569740 -41030190 - L1MA4 LINE L1 -18 6282 6008 1674 146 73 17 chrX 121569755 121570112 -41029818 - L1MC2 LINE L1 -8 6336 5960 297 195 11 35 chrX 121570117 121570204 -41029726 - L1ME4a LINE L1 -224 5897 5813 800 168 0 8 chrX 121570222 121570353 -41029577 + FRAM SINE Alu 35 164 -12 230 211 42 0 chrX 121570416 121570487 -41029443 - L1ME4a LINE L1 -791 5355 5282 2253 104 0 0 chrX 121571473 121571760 -41028170 - AluSx SINE Alu -25 287 1 298 163 12 47 chrX 121572055 121572141 -41027789 - L1MD3 LINE L1 -1 7994 7912 2221 110 3 0 chrX 121572317 121572609 -41027321 + AluSx SINE Alu 1 293 -19 2236 112 0 0 chrX 121572610 121572905 -41027025 + AluSg SINE Alu 1 295 -15 200 260 52 83 chrX 121573079 121573175 -41026755 - L2 LINE L2 0 3272 3180 2357 108 0 9 chrX 121573682 121573997 -41025933 - AluSx SINE Alu 0 312 1 21 71 0 0 chrX 121574358 121574400 -41025530 + AT_rich Low_complexity Low_complexity 1 42 0 447 19 0 0 chrX 121574938 121574990 -41024940 + (TG)n Simple_repeat Simple_repeat 2 53 0 653 206 63 23 chrX 121575023 121575198 -41024732 - L1MC5 LINE L1 -48 7913 7732 2289 109 3 0 chrX 121575199 121575503 -41024427 - AluSx SINE Alu -7 305 1 589 115 115 0 chrX 121575522 121575609 -41024321 - AluS SINE Alu -215 98 2 750 218 168 18 chrX 121575612 121575993 -41023937 - L1MC5 LINE L1 -223 7738 7301 326 283 108 17 chrX 121577643 121577763 -41022167 - L2 LINE L2 -5 3308 3178 2217 103 0 0 chrX 121579458 121579769 -41020161 - AluSx SINE Alu 0 311 1 558 303 88 53 chrX 121581635 121581863 -41018067 - MIR SINE MIR -6 256 21 2367 82 10 0 chrX 121582307 121582612 -41017318 + AluY SINE Alu 1 308 -3 2147 84 3 58 chrX 121582614 121582924 -41017006 + AluSg SINE Alu 1 293 -17 1335 140 62 56 chrX 121583217 121583491 -41016439 + MER33 DNA MER1_type 1 279 -2306 2536 44 0 0 chrX 121583491 121583787 -41016143 + AluY SINE Alu 1 296 -15 1335 140 62 56 chrX 121583787 121583834 -41016096 + MER33 DNA MER1_type 279 324 0 2097 103 50 0 chrX 121584287 121584568 -41015362 + AluSq SINE Alu 1 295 -18 2348 94 0 0 chrX 121585179 121585476 -41014454 - AluSq SINE Alu -16 297 1 269 226 19 0 chrX 121585920 121585973 -41013957 + MER3 DNA MER1_type 32 85 -124 2412 75 3 0 chrX 121586254 121586548 -41013382 + AluSp SINE Alu 1 295 -18 2085 116 3 3 chrX 121587330 121587639 -41012291 + AluSx SINE Alu 1 309 0 1913 157 0 3 chrX 121590237 121590542 -41009388 + AluSx SINE Alu 4 307 -5 481 248 28 43 chrX 121590687 121590828 -41009102 - MIR3 SINE MIR -26 182 44 2360 95 0 13 chrX 121591222 121591539 -41008391 + AluSq SINE Alu 1 313 0 641 284 62 36 chrX 121592816 121593041 -41006889 + MIR SINE MIR 32 262 0 316 250 57 23 chrX 121593030 121593118 -41006812 + L2 LINE L2 3182 3272 0 * 413 215 21 0 chrX 121593126 121593219 -41006711 - MIR SINE MIR -70 138 44 2405 55 35 0 chrX 121593219 121593508 -41006422 - AluSq SINE Alu -14 299 1 2146 91 0 10 chrX 121593567 121593864 -41006066 - AluSq SINE Alu -10 303 10 2207 65 0 7 chrX 121593888 121594167 -41005763 + AluY SINE Alu 1 277 -34 800 12 0 0 chrX 121594167 121594252 -41005678 + AluY SINE Alu 50 134 -177 1335 130 44 101 chrX 121594252 121594401 -41005529 + AluSx SINE Alu 1 124 -188 408 20 0 0 chrX 121594401 121594450 -41005480 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 1335 130 44 101 chrX 121594450 121594616 -41005314 + AluSx SINE Alu 124 298 -14 388 309 41 8 chrX 121594817 121594940 -41004990 - L2 LINE L2 -12 3260 3134 260 254 95 24 chrX 121595158 121595327 -41004603 + L1MC4a LINE L1 5863 6043 -1765 613 156 28 35 chrX 121595573 121595714 -41004216 + L1MA7 LINE L1 6140 6279 -12 28 0 0 0 chrX 121595831 121595859 -41004071 + AT_rich Low_complexity Low_complexity 1 28 0 2257 88 0 3 chrX 121595868 121596152 -41003778 + AluSx SINE Alu 1 283 -29 2248 128 0 0 chrX 121596327 121596623 -41003307 - AluSx SINE Alu -16 296 1 326 185 111 0 chrX 121596683 121596764 -41003166 + L1ME LINE L1 5572 5661 -460 1729 157 40 3 chrX 121596796 121597096 -41002834 - AluJo SINE Alu -1 311 1 6146 118 16 35 chrX 121597104 121597355 -41002575 - L1PA15 LINE L1 0 6165 5911 2339 98 3 0 chrX 121597355 121597652 -41002278 + AluSq SINE Alu 4 301 -12 2305 89 0 3 chrX 121597657 121597948 -41001982 + AluSx SINE Alu 6 295 -17 6146 118 16 35 chrX 121597948 121598532 -41001398 - L1PA15 LINE L1 -258 5907 5313 1865 142 46 80 chrX 121598532 121598620 -41001310 - THE1C LTR MaLR 0 375 286 2109 128 7 0 chrX 121598620 121598925 -41001005 - AluSx SINE Alu 0 312 6 1865 142 46 80 chrX 121598925 121599224 -41000706 - THE1C LTR MaLR -89 286 1 6146 118 16 35 chrX 121599224 121599569 -41000361 - L1PA15 LINE L1 -852 5313 4993 2242 88 0 0 chrX 121599569 121599854 -41000076 - AluSg SINE Alu -2 308 24 6146 118 16 35 chrX 121599854 121599888 -41000042 - L1PA15 LINE L1 -1172 4993 4960 5787 159 9 2 chrX 121599888 121600873 -40999057 + L1PA15 LINE L1 3980 4971 -1175 398 164 120 1 chrX 121600864 121600967 -40998963 + L1ME LINE L1 5710 5808 -313 * 2225 110 0 7 chrX 121601546 121601845 -40998085 - AluSx SINE Alu -15 297 1 1400 212 83 65 chrX 121601961 121602130 -40997800 - L1MC5 LINE L1 -52 7909 7744 2459 38 7 3 chrX 121602130 121602420 -40997510 + AluY SINE Alu 2 292 -19 1400 212 83 65 chrX 121602420 121602710 -40997220 - L1MC5 LINE L1 -217 7744 7436 1730 169 20 13 chrX 121602710 121603012 -40996918 - AluJo SINE Alu -8 304 1 1400 212 83 65 chrX 121603012 121603117 -40996813 - L1MC5 LINE L1 -525 7436 7334 880 147 11 85 chrX 121603130 121603307 -40996623 + FRAM SINE Alu 1 164 -2 706 104 17 17 chrX 121603321 121603436 -40996494 + MER53 DNA DNA 1 115 -74 418 135 16 24 chrX 121603464 121603590 -40996340 + (TA)n Simple_repeat Simple_repeat 1 125 0 2427 59 0 0 chrX 121603596 121603886 -40996044 - AluY SINE Alu -21 290 1 347 113 0 0 chrX 121603895 121603948 -40995982 + MER53 DNA DNA 135 187 -2 1886 135 0 46 chrX 121603990 121604293 -40995637 - AluJo SINE Alu -23 289 1 2230 96 0 13 chrX 121604297 121604599 -40995331 - AluSx SINE Alu -14 298 1 476 172 51 76 chrX 121604607 121604764 -40995166 - L1MC5 LINE L1 -654 7307 7155 1000 264 11 35 chrX 121604790 121605051 -40994879 + MIR SINE MIR 7 261 -1 224 324 54 47 chrX 121605226 121605374 -40994556 - MIR SINE MIR -55 207 59 783 117 67 8 chrX 121605530 121605650 -40994280 - FLAM_C SINE Alu -2 131 5 396 359 0 0 chrX 121605809 121605940 -40993990 + L2 LINE L2 2188 2318 -996 492 229 63 22 chrX 121605972 121606090 -40993840 + L1MC5 LINE L1 7551 7663 -298 1550 201 43 0 chrX 121606090 121606368 -40993562 + AluJo SINE Alu 1 290 -22 492 229 63 22 chrX 121606368 121606472 -40993458 + L1MC5 LINE L1 7663 7782 -179 1894 181 28 21 chrX 121606477 121607163 -40992767 + L1MB2 LINE L1 5571 6291 0 2171 78 0 81 chrX 121607173 121607317 -40992613 + AluSg SINE Alu 1 155 -155 2434 68 3 0 chrX 121607317 121607609 -40992321 + AluY SINE Alu 1 293 -18 2171 78 0 81 chrX 121607609 121607824 -40992106 + AluSg SINE Alu 155 310 0 564 166 32 64 chrX 121607834 121607991 -40991939 + L1MC5 LINE L1 7776 7927 -34 210 361 92 27 chrX 121607994 121608332 -40991598 + L2 LINE L2 2340 2699 -615 1808 111 4 4 chrX 121608351 121608604 -40991326 - AluSx SINE Alu -59 253 1 1760 136 0 0 chrX 121608731 121609027 -40990903 - AluSx SINE Alu 0 312 42 289 301 86 25 chrX 121609956 121610119 -40989811 + MIR SINE MIR 20 192 -70 2388 106 0 0 chrX 121610272 121610583 -40989347 - AluSx SINE Alu -1 311 1 370 168 56 47 chrX 121611040 121611147 -40988783 + L1MC5 LINE L1 7817 7924 -37 2054 116 10 10 chrX 121611379 121611671 -40988259 + AluSx SINE Alu 1 292 -20 1563 162 30 43 chrX 121611756 121612059 -40987871 - AluJo SINE Alu -13 299 1 14759 87 5 0 chrX 121612340 121615074 -40984856 + L1PA7 LINE L1 3431 6154 0 21 0 0 0 chrX 121615162 121615183 -40984747 + AT_rich Low_complexity Low_complexity 1 21 0 3462 124 70 24 chrX 121615220 121615793 -40984137 + LTR9 LTR ERV1 14 612 0 718 216 7 0 chrX 121615793 121615932 -40983998 + MER69 DNA AcHobo 255 394 -832 2206 167 117 26 chrX 121615934 121616462 -40983468 + MER69 DNA AcHobo 1950 2525 -1 195 322 212 0 chrX 121616499 121616617 -40983313 - MIR SINE MIR -119 143 1 548 294 145 13 chrX 121616658 121616886 -40983044 - MIR SINE MIR 0 262 5 2643 39 0 0 chrX 121617337 121617644 -40982286 - AluY SINE Alu -4 307 1 268 229 36 72 chrX 121619128 121619211 -40980719 - MER5B DNA MER1_type -9 169 90 236 364 106 8 chrX 121619209 121619341 -40980589 - L2 LINE L2 -16 3256 3112 * 1880 134 36 4 chrX 121619522 121619797 -40980133 + AluSx SINE Alu 1 284 -28 1062 120 0 0 chrX 121619797 121619972 -40979958 + (TA)n Simple_repeat Simple_repeat 2 176 0 3055 190 35 28 chrX 121619983 121620630 -40979300 + L1MD2 LINE L1 5686 6337 -22 188 65 0 32 chrX 121620788 121620819 -40979111 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1861 136 0 18 chrX 121620827 121621107 -40978823 - AluSx SINE Alu -37 275 1 1045 261 140 27 chrX 121621140 121621261 -40978669 - L1ME4a LINE L1 0 6121 6015 1684 158 62 0 chrX 121621261 121621553 -40978377 - AluJo SINE Alu -2 310 1 1045 261 140 27 chrX 121621553 121621944 -40977986 - L1ME4a LINE L1 -106 6015 5551 250 235 82 35 chrX 121622025 121622110 -40977820 + L2 LINE L2 3221 3309 -4 2186 123 0 19 chrX 121622599 121622915 -40977015 - AluSg SINE Alu 0 310 1 509 247 105 71 chrX 121623181 121623420 -40976510 - MIR SINE MIR -3 259 13 1616 167 13 29 chrX 121623572 121623878 -40976052 + AluJo SINE Alu 3 303 -9 2379 83 0 6 chrX 121623978 121624290 -40975640 + AluSx SINE Alu 1 310 -2 2303 89 13 3 chrX 121624290 121624594 -40975336 + AluSc SINE Alu 1 307 -2 25 0 0 0 chrX 121624594 121624619 -40975311 + AT_rich Low_complexity Low_complexity 1 25 0 511 273 22 50 chrX 121625037 121625138 -40974792 + L2 LINE L2 3138 3235 -37 2223 174 152 35 chrX 121625138 121625599 -40974331 + MLT2B2 LTR ERVL 1 515 0 511 273 22 50 chrX 121625599 121625636 -40974294 + L2 LINE L2 3235 3272 0 309 347 16 8 chrX 121625635 121625756 -40974174 - MIR SINE MIR -140 122 1 * 356 58 0 19 chrX 121625855 121625907 -40974023 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 361 307 44 0 chrX 121625917 121626031 -40973899 - MIR3 SINE MIR -23 185 67 425 351 41 55 chrX 121626170 121626515 -40973415 + L2 LINE L2 2914 3253 -19 186 43 0 0 chrX 121626521 121626544 -40973386 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 1875 130 0 31 chrX 121626995 121627334 -40972596 - AluJo SINE Alu 0 330 1 237 304 130 0 chrX 121627350 121627442 -40972488 + MIR SINE MIR 37 140 -68 1654 171 3 41 chrX 121627624 121627940 -40971990 + AluJo SINE Alu 9 312 0 219 271 12 35 chrX 121627959 121628044 -40971886 - MIR SINE MIR -50 212 130 240 264 0 0 chrX 121628068 121628121 -40971809 - L2 LINE L2 -10 3262 3210 318 311 9 28 chrX 121628131 121628237 -40971693 - MIR SINE MIR -148 114 11 514 271 39 66 chrX 121628399 121628580 -40971350 + MER5B DNA MER1_type 1 176 -2 448 240 58 33 chrX 121628892 121629013 -40970917 - L2 LINE L2 0 3313 3190 1135 298 80 56 chrX 121629019 121629522 -40970408 + REP3 LTR ERV 1 515 -47 519 166 131 148 chrX 121629739 121629968 -40969962 + L1MC4a LINE L1 7043 7267 -541 1348 318 50 42 chrX 121629968 121630582 -40969348 + HERV16 LTR ERVL 1996 2614 -2382 1850 256 14 23 chrX 121630607 121631036 -40968894 + LTR16A LTR ERVL 26 450 0 3210 259 83 9 chrX 121631036 121631903 -40968027 + HERV16 LTR ERVL 1 931 -4065 1980 137 6 30 chrX 121631906 121631977 -40967953 + MER47A DNA MER2_type 37 108 -2215 2263 136 29 32 chrX 121631977 121632353 -40967577 + THE1C LTR MaLR 1 375 0 1980 137 6 30 chrX 121632353 121632618 -40967312 + MER47A DNA MER2_type 108 365 -1 2733 149 57 59 chrX 121632619 121632874 -40967056 + L1MB3 LINE L1 5633 5887 -296 2431 93 0 3 chrX 121632874 121633185 -40966745 - AluSx SINE Alu -2 310 1 2733 149 57 59 chrX 121633185 121633417 -40966513 + L1MB3 LINE L1 5887 6121 -62 842 196 0 0 chrX 121633417 121633550 -40966380 + FLAM_A SINE Alu 1 133 0 2733 149 57 59 chrX 121633550 121633604 -40966326 + L1MB3 LINE L1 6121 6174 -9 460 163 0 0 chrX 121633834 121633920 -40966010 + L1MA4 LINE L1 6208 6293 -7 489 279 126 14 chrX 121633970 121634185 -40965745 - L1MC4a LINE L1 -1882 5926 5688 822 264 88 41 chrX 121635129 121635530 -40964400 + Charlie8 DNA MER1_type 3 237 -2180 868 301 108 40 chrX 121635699 121636220 -40963710 - L2 LINE L2 -9 3263 2700 432 0 0 0 chrX 121636276 121636324 -40963606 + (TG)n Simple_repeat Simple_repeat 1 48 0 270 128 0 0 chrX 121636324 121636363 -40963567 - Alu SINE Alu -21 281 243 * 2183 147 8 14 chrX 121636350 121636706 -40963224 - MLT1B LTR MaLR -17 488 22 744 283 33 25 chrX 121637205 121637312 -40962618 - MIR SINE MIR 0 262 157 2636 128 11 11 chrX 121637312 121637687 -40962243 - THE1C LTR MaLR 0 375 1 10956 99 36 42 chrX 121637687 121639276 -40960654 - THE1C-int LTR MaLR 0 1580 1 2631 119 11 16 chrX 121639276 121639653 -40960277 - THE1C LTR MaLR 0 375 1 744 283 33 25 chrX 121639653 121639783 -40960147 - MIR SINE MIR -104 158 21 2213 243 35 7 chrX 121639796 121640484 -40959446 - L1M4 LINE L1 -2410 3736 3030 5308 153 69 32 chrX 121640489 121641702 -40958228 - L1MA9 LINE L1 -6 6306 5139 2234 110 53 39 chrX 121641702 121641848 -40958082 - MER46B DNA MER2_type -2495 236 205 1990 148 0 0 chrX 121641848 121642153 -40957777 - AluSx SINE Alu 0 310 6 2234 110 53 39 chrX 121642153 121642360 -40957570 - MER46B DNA MER2_type -2526 205 2 5308 153 69 32 chrX 121642360 121642418 -40957512 - L1MA9 LINE L1 -1173 5139 5085 704 238 0 0 chrX 121642418 121642544 -40957386 - FLAM_A SINE Alu -7 126 1 5308 153 69 32 chrX 121642544 121642585 -40957345 - L1MA9 LINE L1 -1227 5085 2936 2096 279 31 13 chrX 121642585 121643219 -40956711 - L1MEc LINE L1 -5714 682 37 2298 97 10 7 chrX 121643263 121643572 -40956358 - AluSg SINE Alu 0 310 1 21 36 0 0 chrX 121643644 121643672 -40956258 + AT_rich Low_complexity Low_complexity 1 28 0 504 169 0 0 chrX 121643815 121643892 -40956038 + FLAM SINE Alu 46 122 -21 346 125 0 18 chrX 121643897 121643953 -40955977 - LOR1a LTR ERV1 -419 78 24 353 136 0 34 chrX 121643991 121644050 -40955880 - LOR1b LTR ERV1 -404 57 1 1688 181 24 0 chrX 121644071 121644364 -40955566 - AluJo SINE Alu -12 300 1 2129 118 3 10 chrX 121644948 121645244 -40954686 - AluSx SINE Alu -18 294 1 234 291 63 0 chrX 121645314 121645393 -40954537 - MIR SINE MIR 0 262 179 1869 134 29 146 chrX 121646450 121646832 -40953098 - MLT1A2 LTR MaLR -2 372 -53 2599 58 0 7 chrX 121646832 121647140 -40952790 + AluY SINE Alu 1 306 -5 213 65 0 0 chrX 121647140 121647171 -40952759 + (TA)n Simple_repeat Simple_repeat 2 32 0 1869 134 29 146 chrX 121647171 121647206 -40952724 - MLT1A2 LTR MaLR -334 40 3 290 209 44 22 chrX 121647210 121647301 -40952629 + CT-rich Low_complexity Low_complexity 5 97 0 621 232 0 63 chrX 121647662 121647852 -40952078 - MIR SINE MIR -70 192 15 220 220 20 0 chrX 121649145 121649195 -40950735 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 2033 152 0 3 chrX 121649235 121649545 -40950385 - AluSx SINE Alu -2 310 2 1016 198 0 0 chrX 121649579 121649741 -40950189 - FRAM SINE Alu -4 162 1 409 264 48 18 chrX 121649761 121649910 -40950020 - L1MD3 LINE L1 -1 7994 7785 1437 181 75 0 chrX 121649955 121650209 -40949721 + MLT1A1 LTR MaLR 1 273 -92 2178 108 16 25 chrX 121650209 121650589 -40949341 - AluSx SINE Alu 0 377 1 733 142 0 0 chrX 121650589 121650695 -40949235 + MLT1A1 LTR MaLR 260 365 0 1669 215 77 48 chrX 121650831 121651310 -40948620 + Charlie4a DNA MER1_type 1 493 -15 4740 173 34 19 chrX 121653113 121653840 -40946090 - L1MB4 LINE L1 0 6180 5465 243 61 0 0 chrX 121653840 121653873 -40946057 + (TG)n Simple_repeat Simple_repeat 2 34 0 2062 130 0 7 chrX 121653873 121654157 -40945773 - AluSx SINE Alu -28 284 3 4740 173 34 19 chrX 121654157 121654635 -40945295 - L1MB4 LINE L1 -714 5466 4960 237 33 0 0 chrX 121655104 121655134 -40944796 + (CAA)n Simple_repeat Simple_repeat 2 31 0 261 259 0 37 chrX 121655469 121655550 -40944380 - L2 LINE L2 -8 3264 3187 2119 137 0 0 chrX 121655558 121655858 -40944072 + AluSx SINE Alu 1 300 -12 2284 144 8 93 chrX 121656082 121656377 -40943553 - L1MA7 LINE L1 0 6291 5972 1942 160 0 0 chrX 121656377 121656664 -40943266 - AluJo SINE Alu -25 287 1 2284 144 8 93 chrX 121656664 121656870 -40943060 - L1MA7 LINE L1 -319 5972 5832 809 220 0 0 chrX 121656870 121657002 -40942928 - FLAM_A SINE Alu -1 132 1 2284 144 8 93 chrX 121657002 121657014 -40942916 - L1MA7 LINE L1 -459 5832 5821 1336 49 0 16 chrX 121657016 121657199 -40942731 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2243 105 0 0 chrX 121657203 121657497 -40942433 - AluSq SINE Alu -19 294 1 20284 168 47 18 chrX 121657543 121660058 -40939872 + L1PA14 LINE L1 1 2440 -5159 2077 139 7 0 chrX 121660058 121660360 -40939570 + AluSx SINE Alu 1 304 -8 20284 168 47 18 chrX 121660360 121665166 -40934764 + L1PA14 LINE L1 2440 7590 -9 405 0 0 0 chrX 121665166 121665211 -40934719 + (CA)n Simple_repeat Simple_repeat 1 45 0 1320 140 0 0 chrX 121665211 121665404 -40934526 - L1MA7 LINE L1 -480 5811 5619 717 223 20 0 chrX 121665545 121665693 -40934237 - MIR SINE MIR 0 262 112 2453 79 3 0 chrX 121666583 121666886 -40933044 - AluSp SINE Alu -9 304 1 568 190 35 0 chrX 121667351 121667467 -40932463 - MER103 DNA DNA -46 120 1 436 131 12 12 chrX 121668005 121668089 -40931841 + GA-rich Low_complexity Low_complexity 2 85 0 243 0 0 0 chrX 121668186 121668213 -40931717 + (TG)n Simple_repeat Simple_repeat 2 28 0 563 161 43 117 chrX 121668278 121668440 -40931490 + MLT1A1 LTR MaLR 1 150 -215 3815 207 11 5 chrX 121668468 121669291 -40930639 + L1PA16 LINE L1 4334 5161 -985 2365 107 0 0 chrX 121669315 121669625 -40930305 + AluSx SINE Alu 1 310 -2 5621 102 10 11 chrX 121669635 121670451 -40929479 + L1PA16 LINE L1 5352 6166 0 249 33 0 0 chrX 121670461 121670491 -40929439 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 229 289 0 0 chrX 121670593 121670676 -40929254 - L1MC4 LINE L1 -13 8029 7947 885 215 33 8 chrX 121670749 121670991 -40928939 - L1MC5 LINE L1 -412 7549 7302 2771 177 13 13 chrX 121671702 121672097 -40927833 - L1MA9 LINE L1 -21 6291 5799 348 24 0 0 chrX 121672097 121672138 -40927792 + (TC)n Simple_repeat Simple_repeat 2 42 0 2771 177 13 13 chrX 121672138 121672348 -40927582 - L1MA9 LINE L1 -513 5799 5590 2055 172 37 26 chrX 121672351 121672829 -40927101 + MLT2A2 LTR ERVL 1 489 -26 2044 151 35 25 chrX 121672838 121673471 -40926459 - L1MA9 LINE L1 -721 5591 4945 * 3170 167 2 34 chrX 121673446 121674162 -40925768 + L1 LINE L1 4368 5029 -1117 2186 119 0 7 chrX 121674286 121674589 -40925341 - AluSx SINE Alu -11 301 1 21 36 0 0 chrX 121674599 121674627 -40925303 + AT_rich Low_complexity Low_complexity 1 28 0 2793 133 28 14 chrX 121675492 121675914 -40924016 + MSTA LTR MaLR 1 428 0 27 0 0 0 chrX 121676454 121676481 -40923449 + AT_rich Low_complexity Low_complexity 1 27 0 740 82 0 0 chrX 121676481 121676579 -40923351 - L1PB1 LINE L1 -1 6150 6053 630 315 42 17 chrX 121677104 121677342 -40922588 + MIR SINE MIR 9 252 -10 1037 272 0 8 chrX 121677555 121677794 -40922136 + MIR SINE MIR 22 258 -4 1277 253 112 12 chrX 121677977 121678423 -40921507 + MLT1G1 LTR MaLR 10 550 -45 736 311 16 29 chrX 121678672 121678984 -40920946 + L2 LINE L2 2351 2658 -656 432 82 0 0 chrX 121679344 121679405 -40920525 + (TG)n Simple_repeat Simple_repeat 2 62 0 263 309 41 31 chrX 121679686 121679783 -40920147 + HERV16 LTR ERVL 39 136 -4860 277 302 75 38 chrX 121679971 121680130 -40919800 + HERV16 LTR ERVL 408 572 -5082 1071 155 32 60 chrX 121680440 121680692 -40919238 + L1ME2 LINE L1 5854 6098 -66 1298 249 32 6 chrX 121680712 121681025 -40918905 - MLT1E3 LTR MaLR -15 609 289 905 178 0 78 chrX 121681053 121681244 -40918686 - AluJo SINE Alu -4 308 133 788 241 108 9 chrX 121681247 121681459 -40918471 - MLT1E3 LTR MaLR -360 233 1 701 343 15 19 chrX 121681583 121681854 -40918076 + HERV16 LTR ERVL 3536 3805 -1959 619 343 37 19 chrX 121681851 121682122 -40917808 + HERV16 LTR ERVL 4169 4444 -1210 * 268 350 6 40 chrX 121682118 121682295 -40917635 + HERV16 LTR ERVL 4621 4791 -973 * 700 273 35 43 chrX 121682546 121682777 -40917153 + MIR SINE MIR 20 248 -14 9227 173 18 6 chrX 121682891 121684626 -40915304 - L1PB2 LINE L1 -2 6149 4367 216 0 0 0 chrX 121684626 121684650 -40915280 + (TTG)n Simple_repeat Simple_repeat 2 25 0 9227 173 18 6 chrX 121684650 121685705 -40914225 - L1PB2 LINE L1 -1784 4367 3326 5370 210 60 73 chrX 121685708 121686813 -40913117 - MER65A-int LTR ERV1 -2994 1877 760 2219 91 0 7 chrX 121686813 121687134 -40912796 + AluSx SINE Alu 1 319 0 5370 210 60 73 chrX 121687134 121687347 -40912583 - MER65A-int LTR ERV1 -4111 760 546 792 167 0 36 chrX 121687347 121687485 -40912445 - AluJo SINE Alu -169 133 1 5370 210 60 73 chrX 121687485 121688004 -40911926 - MER65A-int LTR ERV1 -4325 546 61 2912 124 14 9 chrX 121688064 121688507 -40911423 - MER65A LTR ERV1 0 445 1 1140 176 5 0 chrX 121688551 121688756 -40911174 - L1MC3 LINE L1 -314 7471 7266 790 282 42 29 chrX 121688766 121689007 -40910923 + MIR SINE MIR 3 246 -16 634 246 132 18 chrX 121689348 121689568 -40910362 + MIR SINE MIR 12 256 -6 228 272 12 37 chrX 121690792 121690873 -40909057 - Charlie4 DNA MER1_type 0 1961 1883 2302 102 23 0 chrX 121690982 121691287 -40908643 - AluSx SINE Alu 0 312 1 1947 138 3 7 chrX 121691326 121691609 -40908321 + AluJo SINE Alu 1 282 -30 3293 40 0 5 chrX 121691953 121692362 -40907568 - L1PA5 LINE L1 0 6154 5779 582 327 64 17 chrX 121692379 121692676 -40907254 - LTR16C LTR ERVL 0 491 181 338 202 19 58 chrX 121692874 121692978 -40906952 + L1MC5 LINE L1 7838 7937 -24 4160 159 31 7 chrX 121693950 121694668 -40905262 + L1MD1 LINE L1 5508 6242 0 291 71 0 0 chrX 121694729 121694771 -40905159 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chrX 121696101 121696123 -40903807 + AT_rich Low_complexity Low_complexity 1 22 0 2563 42 0 10 chrX 121696474 121696780 -40903150 - AluY SINE Alu -8 303 1 2415 108 0 0 chrX 121697829 121698136 -40901794 - AluSx SINE Alu -5 307 1 1433 164 0 4 chrX 121698153 121698384 -40901546 + AluJb SINE Alu 63 292 -20 378 257 137 22 chrX 121698751 121698935 -40900995 + MLT1J1 LTR MaLR 45 209 -237 640 251 39 111 chrX 121699783 121699990 -40899940 - MER91A DNA MER1_type -4 192 1 186 246 0 66 chrX 121700092 121700153 -40899777 + L3b LINE CR1 1215 1271 -312 * 252 319 118 35 chrX 121700152 121700296 -40899634 + L2 LINE L2 2898 3053 -219 320 286 171 40 chrX 121700434 121700609 -40899321 + L2 LINE L2 3075 3272 0 443 231 77 39 chrX 121700803 121700933 -40898997 + MIR SINE MIR 16 150 -58 658 216 163 0 chrX 121701371 121701524 -40898406 + MER5A DNA MER1_type 12 189 0 439 304 216 0 chrX 121702717 121702921 -40897009 + MIR SINE MIR 5 252 -10 529 341 91 50 chrX 121702977 121703147 -40896783 + L2 LINE L2 2919 3081 -191 2207 121 0 0 chrX 121703147 121703445 -40896485 - AluSx SINE Alu -14 298 1 529 341 91 50 chrX 121703445 121703614 -40896316 + L2 LINE L2 3081 3272 0 473 208 10 0 chrX 121704662 121704763 -40895167 + MER53 DNA DNA 4 105 -84 374 276 0 11 chrX 121706295 121706382 -40893548 - MIR SINE MIR -165 97 12 600 215 80 50 chrX 121706390 121706480 -40893450 + MER113 DNA MER1_type? 6 92 -429 3856 88 11 11 chrX 121706480 121707013 -40892917 - L1MA1 LINE L1 0 6302 5770 600 215 80 50 chrX 121707013 121707122 -40892808 + MER113 DNA MER1_type? 92 211 -310 233 318 0 0 chrX 121707156 121707219 -40892711 + MER113 DNA MER1_type? 459 521 0 2051 147 108 66 chrX 121707300 121707709 -40892221 + MSTA LTR MaLR 3 428 0 1426 186 69 31 chrX 121707727 121707760 -40892170 + MLT1A1 LTR MaLR 36 66 -299 1081 258 83 52 chrX 121707760 121708144 -40891786 - MSTD LTR MaLR 0 396 1 1426 186 69 31 chrX 121708144 121708428 -40891502 + MLT1A1 LTR MaLR 66 365 0 5890 144 11 21 chrX 121709507 121710029 -40889901 + L1PB3 LINE L1 4843 5369 -785 2042 126 34 0 chrX 121710029 121710322 -40889608 + AluSx SINE Alu 1 303 -9 5890 144 11 21 chrX 121710322 121711127 -40888803 + L1PB3 LINE L1 5369 6152 -2 23 33 0 0 chrX 121711127 121711157 -40888773 + AT_rich Low_complexity Low_complexity 1 30 0 389 140 0 11 chrX 121712144 121712211 -40887719 - MIR SINE MIR -81 181 117 404 324 44 11 chrX 121712213 121712395 -40887535 + L2 LINE L2 3104 3291 -22 2068 213 17 38 chrX 121712406 121712881 -40887049 - LTR40c LTR ERVL 0 465 1 198 265 132 0 chrX 121712900 121712968 -40886962 + MIR SINE MIR 119 195 -67 727 232 52 92 chrX 121712971 121713277 -40886653 + L2 LINE L2 3019 3312 -1 521 286 158 5 chrX 121713635 121713831 -40886099 - MIR SINE MIR -15 247 22 725 259 66 26 chrX 121714123 121714351 -40885579 + MIR SINE MIR 23 259 -3 228 201 38 208 chrX 121715419 121715578 -40884352 - MER5A DNA MER1_type -41 148 17 * 311 256 13 13 chrX 121715501 121715579 -40884351 + MER5A DNA MER1_type 111 188 -1 683 233 25 2 chrX 121715588 121715751 -40884179 + MIR SINE MIR 41 203 -59 501 257 132 26 chrX 121716538 121716690 -40883240 - MER5B DNA MER1_type -9 169 2 1606 239 33 30 chrX 121716777 121717467 -40882463 - L2 LINE L2 0 3313 2625 636 333 5 10 chrX 121718067 121718268 -40881662 - MIR SINE MIR -2 260 61 410 271 19 0 chrX 121718959 121719066 -40880864 + LTR33 LTR ERVL 1 109 -412 505 124 0 115 chrX 121719124 121719237 -40880693 + LTR33 LTR ERVL 422 521 0 425 250 16 47 chrX 121719702 121719830 -40880100 + L2 LINE L2 3190 3313 0 2125 149 54 11 chrX 121720179 121720529 -40879401 + MLT1A1 LTR MaLR 1 365 0 2218 148 0 81 chrX 121722480 121722531 -40877399 - MSTC LTR MaLR 0 428 374 2086 122 0 3 chrX 121722531 121722827 -40877103 - AluSx SINE Alu -15 297 3 2218 148 0 81 chrX 121722827 121723195 -40876735 - MSTC LTR MaLR -54 374 43 673 160 14 14 chrX 121723201 121723345 -40876585 + CT-rich Low_complexity Low_complexity 1 144 0 687 168 28 0 chrX 121723404 121723511 -40876419 - FLAM_C SINE Alu -31 112 3 288 109 87 0 chrX 121723518 121723564 -40876366 - MSTC LTR MaLR -378 50 1 282 290 203 36 chrX 121724525 121724663 -40875267 + MIR3 SINE MIR 9 169 -39 2193 110 0 38 chrX 121724663 121724843 -40875087 - AluSx SINE Alu -6 306 142 2573 57 0 0 chrX 121724843 121725144 -40874786 - AluY SINE Alu -10 301 1 2193 110 0 38 chrX 121725144 121725281 -40874649 - AluSx SINE Alu -170 142 1 946 200 46 0 chrX 121725284 121725459 -40874471 - MER5A DNA MER1_type -6 183 1 24 0 0 0 chrX 121725861 121725885 -40874045 + AT_rich Low_complexity Low_complexity 1 24 0 281 297 190 26 chrX 121725898 121726093 -40873837 + L1MCa LINE L1 295 521 -5905 1166 148 78 3 chrX 121726149 121726493 -40873437 - L1ME LINE L1 -662 5502 5136 239 277 75 25 chrX 121726712 121726871 -40873059 - L1P LINE L1 -1105 5041 4875 2310 87 17 3 chrX 121727174 121727472 -40872458 + AluSq SINE Alu 1 302 -11 2395 194 109 94 chrX 121727484 121728247 -40871683 + L1MD1 LINE L1 5461 6234 -8 742 274 25 24 chrX 121728776 121728829 -40871101 + MIR SINE MIR 6 57 -205 1833 151 0 11 chrX 121728829 121729107 -40870823 + AluJb SINE Alu 1 275 -37 742 274 25 24 chrX 121729107 121729305 -40870625 + MIR SINE MIR 57 256 -6 711 287 22 22 chrX 121729338 121729568 -40870362 - L2 LINE L2 0 3313 3084 1877 248 85 41 chrX 121729596 121730079 -40869851 - L1MC4 LINE L1 -1 8041 7514 2215 93 3 10 chrX 121730079 121730379 -40869551 + AluSx SINE Alu 1 298 -14 1877 248 85 41 chrX 121730379 121730621 -40869309 - L1MC4 LINE L1 -528 7514 7284 876 273 34 4 chrX 121730622 121730860 -40869070 - L2 LINE L2 -345 2969 2725 21 36 0 0 chrX 121730869 121730897 -40869033 + AT_rich Low_complexity Low_complexity 1 28 0 3016 163 42 14 chrX 121730944 121731498 -40868432 + Looper DNA T2_type 596 1164 -394 2210 128 0 0 chrX 121731521 121731833 -40868097 - AluSx SINE Alu 0 312 1 316 313 31 41 chrX 121732649 121732844 -40867086 - L1MC4a LINE L1 -1888 5920 5728 707 250 71 43 chrX 121733731 121734061 -40865869 + MLT1J2 LTR MaLR 36 406 -44 2964 6 0 0 chrX 121735353 121735670 -40864260 - AluYb8 SINE Alu -1 317 1 705 324 77 48 chrX 121735806 121736284 -40863646 + L2 LINE L2 2465 2956 -358 503 202 42 25 chrX 121736293 121736412 -40863518 + MER5B DNA MER1_type 55 175 -3 424 303 54 103 chrX 121736415 121736676 -40863254 + L2 LINE L2 3006 3253 -19 586 300 96 5 chrX 121736706 121736926 -40863004 - MIR SINE MIR -10 252 13 2354 219 37 47 chrX 121736967 121737365 -40862565 - MLT1E3 LTR MaLR 0 624 224 2109 90 4 0 chrX 121737365 121737633 -40862297 - AluSg SINE Alu -7 303 35 2354 219 37 47 chrX 121737633 121737644 -40862286 - MLT1E3 LTR MaLR -400 224 214 542 123 0 0 chrX 121737644 121737725 -40862205 - L1MA3 LINE L1 0 6305 6225 2354 219 37 47 chrX 121737725 121737936 -40861994 - MLT1E3 LTR MaLR -410 214 9 1779 185 21 56 chrX 121737936 121738314 -40861616 + MLT1A1 LTR MaLR 1 365 0 224 239 13 148 chrX 121738315 121738470 -40861460 - MIR SINE MIR -29 233 100 2700 86 24 24 chrX 121738777 121739151 -40860779 - THE1C LTR MaLR 0 375 2 926 68 14 14 chrX 121740258 121740404 -40859526 + (TTTC)n Simple_repeat Simple_repeat 1 146 0 709 159 0 0 chrX 121740406 121740519 -40859411 - AluJb SINE Alu -199 113 1 3426 83 13 0 chrX 121740688 121741146 -40858784 + L1PA11 LINE L1 5711 6174 0 333 0 0 0 chrX 121741170 121741207 -40858723 + (CA)n Simple_repeat Simple_repeat 2 38 0 961 266 20 12 chrX 121741262 121741510 -40858420 + MIR SINE MIR 13 262 0 561 95 0 0 chrX 121741657 121741741 -40858189 - AluSc SINE Alu -1 308 225 588 191 8 38 chrX 121742019 121742150 -40857780 + MIR SINE MIR 132 258 -4 221 300 0 38 chrX 121742180 121742260 -40857670 - MER5A DNA MER1_type -70 119 43 390 267 86 0 chrX 121743274 121743390 -40856540 - MIR SINE MIR -119 143 18 476 269 79 9 chrX 121744349 121744493 -40855437 + MIR SINE MIR 3 153 -63 1847 233 101 20 chrX 121744730 121745267 -40854663 + MLT1E LTR MaLR 1 580 -13 257 195 165 29 chrX 121745385 121745512 -40854418 - MIR SINE MIR -12 250 91 258 200 0 0 chrX 121745617 121745662 -40854268 + L2 LINE L2 3211 3255 -17 583 270 66 10 chrX 121746293 121746489 -40853441 + MIR SINE MIR 4 210 -52 308 250 191 44 chrX 121746651 121746787 -40853143 - MIR SINE MIR -87 175 20 2107 83 7 0 chrX 121746974 121747290 -40852640 + AluSc SINE Alu 1 318 0 358 200 76 76 chrX 121748977 121749122 -40850808 + MER103 DNA DNA 3 147 -19 630 287 80 34 chrX 121749128 121749365 -40850565 + MIR SINE MIR 2 249 -13 2282 87 13 7 chrX 121749373 121749671 -40850259 - AluSx SINE Alu -12 300 1 580 233 42 72 chrX 121750327 121750520 -40849410 - MER5A DNA MER1_type -2 187 1 539 0 0 0 chrX 121750524 121750587 -40849343 - L1PA4 LINE L1 -183 5972 5910 562 30 0 0 chrX 121750587 121750682 -40849248 + L1PA4 LINE L1 6071 6171 0 857 261 63 4 chrX 121750697 121750935 -40848995 + MIR SINE MIR 11 262 0 327 334 35 10 chrX 121751991 121752177 -40847753 + MIR3 SINE MIR 13 166 -42 378 171 0 0 chrX 121753342 121753412 -40846518 + T-rich Low_complexity Low_complexity 1 70 0 2270 102 3 10 chrX 121753961 121754265 -40845665 - AluSg SINE Alu -8 302 1 390 304 133 6 chrX 121754374 121754489 -40845441 + MIR SINE MIR 14 113 -149 950 179 26 30 chrX 121754489 121754723 -40845207 - L1MA7 LINE L1 0 6291 6059 390 304 133 6 chrX 121754723 121754788 -40845142 + MIR SINE MIR 113 217 -45 369 265 41 87 chrX 121754962 121755041 -40844889 - HAL1 LINE L1 -1410 1097 1016 2289 109 0 3 chrX 121755041 121755345 -40844585 - AluSq SINE Alu -10 303 1 369 265 41 87 chrX 121755345 121755484 -40844446 - HAL1 LINE L1 -1491 1016 889 315 308 54 45 chrX 121755525 121755746 -40844184 + L2 LINE L2 3002 3224 -89 1430 213 3 7 chrX 121756268 121756555 -40843375 - REP3 LTR ERV 0 562 277 200 223 53 0 chrX 121756577 121756671 -40843259 + (TA)n Simple_repeat Simple_repeat 1 99 0 1293 223 18 14 chrX 121756674 121756957 -40842973 - REP3 LTR ERV -278 284 1 492 99 0 0 chrX 121757335 121757406 -40842524 + (TG)n Simple_repeat Simple_repeat 2 72 0 417 123 0 0 chrX 121757412 121757477 -40842453 + (CA)n Simple_repeat Simple_repeat 2 66 0 23 0 0 0 chrX 121758139 121758162 -40841768 + AT_rich Low_complexity Low_complexity 1 23 0 445 266 203 68 chrX 121758219 121758647 -40841283 - L2 LINE L2 -2 3311 2826 531 0 0 0 chrX 121759176 121759240 -40840690 - L1PA3 LINE L1 -3 6152 6089 1467 106 31 0 chrX 121759248 121759475 -40840455 - L1PA10 LINE L1 -3 6165 5932 288 186 0 0 chrX 121761680 121761739 -40838191 + CT-rich Low_complexity Low_complexity 2 60 0 4010 149 19 16 chrX 121761948 121762384 -40837546 + L1MA9 LINE L1 5361 5794 -518 279 0 0 0 chrX 121762384 121762415 -40837515 + (CA)n Simple_repeat Simple_repeat 2 32 0 4010 149 19 16 chrX 121762415 121762808 -40837122 + L1MA9 LINE L1 5794 6291 -21 584 272 72 57 chrX 121763658 121763993 -40835937 - MLT1K LTR MaLR -107 481 142 506 340 83 15 chrX 121764333 121764659 -40835271 + L2 LINE L2 2961 3308 -5 225 196 0 0 chrX 121764773 121764819 -40835111 + GA-rich Low_complexity Low_complexity 3 48 0 516 304 54 0 chrX 121765221 121765389 -40834541 + MER5A DNA MER1_type 13 189 0 3462 91 0 4 chrX 121765759 121766245 -40833685 - L1PA13 LINE L1 0 6163 5680 322 263 109 0 chrX 121766746 121766883 -40833047 - MER103 DNA DNA -1 165 14 181 156 31 0 chrX 121767232 121767264 -40832666 - MIR SINE MIR -86 122 90 422 169 11 0 chrX 121767330 121767419 -40832511 + (TA)n Simple_repeat Simple_repeat 2 91 0 2395 73 0 13 chrX 121767624 121767964 -40831966 + AluSq SINE Alu 1 313 0 2112 154 0 0 chrX 121768013 121768325 -40831605 - AluJb SINE Alu 0 312 1 1710 195 61 21 chrX 121768983 121769362 -40830568 + MLT2C1 LTR ERVL 3 396 -1 1144 99 0 12 chrX 121769383 121769555 -40830375 - L1PB1 LINE L1 -212 5939 5770 360 17 85 0 chrX 121769555 121769614 -40830316 + T-rich Low_complexity Low_complexity 3 66 0 2278 121 7 0 chrX 121769617 121769924 -40830006 - AluSg SINE Alu -1 309 1 1379 65 0 0 chrX 121769927 121770113 -40829817 - L1PB1 LINE L1 -372 5779 5594 4444 61 30 22 chrX 121770113 121771226 -40828704 + MER11A LTR ERVK 1 1266 0 228 65 0 0 chrX 121771226 121771257 -40828673 - L1PB1 LINE L1 -552 5599 5569 1481 85 0 0 chrX 121771261 121771462 -40828468 + L1PB1 LINE L1 5950 6150 -1 26 0 0 0 chrX 121771488 121771514 -40828416 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrX 121771523 121771547 -40828383 + AT_rich Low_complexity Low_complexity 1 24 0 1343 186 125 0 chrX 121771938 121772202 -40827728 - AluSg SINE Alu -3 297 1 535 59 0 0 chrX 121772202 121772270 -40827660 - AluSc SINE Alu -176 133 66 1230 166 0 0 chrX 121772271 121772464 -40827466 - AluSg SINE Alu -113 197 5 1040 261 79 52 chrX 121772536 121772680 -40827250 + MLT1J LTR MaLR 1 140 -371 656 277 68 20 chrX 121772680 121772929 -40827001 + MIR SINE MIR 2 262 0 1040 261 79 52 chrX 121772929 121773279 -40826651 + MLT1J LTR MaLR 140 508 -3 17264 93 8 5 chrX 121773818 121776307 -40823623 + L1P LINE L1 11 2506 -3640 1820 199 40 87 chrX 121776307 121776953 -40822977 + LTR6A LTR ERV1 1 564 0 22626 44 0 1 chrX 121776953 121780600 -40819330 + L1PA5 LINE L1 2503 6164 0 384 291 272 5 chrX 121781173 121781379 -40818551 - MIR SINE MIR 0 262 2 343 229 255 20 chrX 121781433 121781586 -40818344 + MIR SINE MIR 2 190 -72 219 372 25 16 chrX 121781640 121781761 -40818169 + L2 LINE L2 3160 3281 -32 10709 96 4 7 chrX 121782111 121783743 -40816187 - L1PA8A LINE L1 -849 5297 3671 6128 67 4 0 chrX 121783743 121784566 -40815364 + L1PA8A LINE L1 5305 6130 -1 568 230 56 35 chrX 121784745 121785002 -40814928 + L1MEd LINE L1 1073 1427 -1063 271 273 0 0 chrX 121785005 121785068 -40814862 - MIR SINE MIR -107 101 39 222 204 37 19 chrX 121785081 121785135 -40814795 - MIR3 SINE MIR -43 165 111 704 241 39 29 chrX 121785346 121785553 -40814377 - MIR SINE MIR -51 211 3 617 237 0 0 chrX 121785572 121785686 -40814244 + L2 LINE L2 3199 3312 -1 493 335 76 78 chrX 121788325 121788773 -40811157 - L2 LINE L2 0 3272 2826 443 89 51 0 chrX 121789121 121789200 -40810730 - L1PA13 LINE L1 -3 6160 6078 1093 97 0 0 chrX 121789268 121789422 -40810508 - L1PA13 LINE L1 -91 6072 5919 * 33368 100 14 60 chrX 121789421 121795791 -40804139 - L1PA8 LINE L1 -87 6085 12 3918 130 12 0 chrX 121795802 121796646 -40803284 - L1PA13 LINE L1 -333 5830 4977 419 249 52 72 chrX 121796841 121797034 -40802896 + MIR3 SINE MIR 16 204 -4 22 0 0 0 chrX 121797437 121797459 -40802471 + AT_rich Low_complexity Low_complexity 1 22 0 5853 105 36 5 chrX 121797459 121798316 -40801614 - L1PB1 LINE L1 0 6151 5268 863 237 23 0 chrX 121798313 121798528 -40801402 + L1PB1 LINE L1 5051 5270 -876 * 479 221 29 22 chrX 121798742 121798878 -40801052 + MER117 DNA MER1_type 1 137 -60 471 157 0 45 chrX 121799518 121799607 -40800323 - L1ME3A LINE L1 -5 6165 6081 370 272 61 26 chrX 121799768 121799920 -40800010 + MIR SINE MIR 40 195 -62 230 192 231 0 chrX 121799957 121800009 -40799921 + L2 LINE L2 3246 3309 -4 321 135 0 0 chrX 121800440 121800492 -40799438 + (T)n Simple_repeat Simple_repeat 1 52 0 376 207 23 0 chrX 121801341 121801428 -40798502 - L1MC5 LINE L1 -56 7905 7817 446 254 101 29 chrX 121803849 121803987 -40795943 + MIR3 SINE MIR 38 185 -23 272 275 0 14 chrX 121804647 121804716 -40795214 + L2 LINE L2 3186 3253 -19 190 393 0 0 chrX 121804716 121804777 -40795153 + L2 LINE L2 3031 3091 -181 2553 115 10 31 chrX 121805422 121805605 -40794325 - L1PB1 LINE L1 -6 6145 5960 2593 68 0 0 chrX 121805605 121805916 -40794014 - AluY SINE Alu 0 311 1 2553 115 10 31 chrX 121805916 121806116 -40793814 - L1PB1 LINE L1 -191 5960 5770 1065 103 7 0 chrX 121806128 121806274 -40793656 - MER66A LTR ERV1 -87 391 245 25 0 0 0 chrX 121806274 121806299 -40793631 + AT_rich Low_complexity Low_complexity 1 25 0 876 116 0 0 chrX 121806299 121806411 -40793519 - AluSq/x SINE Alu -197 115 4 424 259 19 68 chrX 121806415 121806577 -40793353 - MER66A LTR ERV1 -224 254 101 382 81 0 32 chrX 121806580 121806642 -40793288 - L1PA7 LINE L1 -2 6152 6093 15851 165 51 13 chrX 121806642 121807436 -40792494 - L1P5 LINE L1 -384 6483 5721 1826 113 58 4 chrX 121807436 121807710 -40792220 - AluSx SINE Alu -13 299 11 15851 165 51 13 chrX 121807710 121810519 -40789411 - L1P5 LINE L1 -1146 5721 3021 2235 100 0 3 chrX 121810519 121810809 -40789121 - AluSc SINE Alu -20 289 1 15851 165 51 13 chrX 121810809 121813406 -40786524 - L1P5 LINE L1 -3846 3021 6 811 289 80 28 chrX 121813911 121814198 -40785732 - MLT1J2 LTR MaLR -128 322 21 2660 155 21 7 chrX 121814443 121814862 -40785068 - MSTB LTR MaLR -1 425 1 303 293 13 0 chrX 121815056 121815131 -40784799 - L2 LINE L2 -12 3260 3185 1188 248 64 56 chrX 121815131 121815739 -40784191 + L1ME1 LINE L1 5423 6016 -105 253 295 36 9 chrX 121815855 121815967 -40783963 + L1ME4a LINE L1 5969 6083 -38 322 362 127 18 chrX 121815978 121816254 -40783676 - L2 LINE L2 -63 3209 2904 2316 91 0 13 chrX 121816256 121816564 -40783366 + AluY SINE Alu 1 304 -7 546 232 26 26 chrX 121816711 121816862 -40783068 - MIR SINE MIR -3 259 109 591 279 6 27 chrX 121817004 121817187 -40782743 - MER5A DNA MER1_type -1 188 10 1378 114 51 11 chrX 121818758 121819047 -40780883 - L1M LINE L1 -743 5403 5116 438 127 51 0 chrX 121819044 121819123 -40780807 + L1M2 LINE L1 5420 5502 -789 * 1165 152 5 0 chrX 121819126 121819323 -40780607 + L1PBa LINE L1 3 200 -6663 * 11009 125 37 5 chrX 121819315 121820772 -40779158 + L1PBa LINE L1 625 2034 -4828 2021 147 62 42 chrX 121820772 121821126 -40778804 + THE1B LTR MaLR 3 363 -1 11009 125 37 5 chrX 121821126 121822820 -40777110 + L1PBa LINE L1 2034 4009 -2853 5530 175 32 14 chrX 121822824 121822838 -40777092 - L1P LINE L1 -1976 4170 4158 6447 167 20 22 chrX 121822838 121824036 -40775894 - L1PA13 LINE L1 -2 6161 4956 2293 90 7 0 chrX 121824036 121824335 -40775595 - AluY SINE Alu -10 301 1 6447 167 20 22 chrX 121824335 121825137 -40774793 - L1PA13 LINE L1 -1207 4956 4154 5175 39 0 5 chrX 121825137 121825719 -40774211 - L1PA5 LINE L1 -1 6153 5570 5530 175 32 14 chrX 121825719 121826794 -40773136 - L1P LINE L1 -1987 4159 3060 868 169 18 12 chrX 121826787 121826931 -40772999 - L1MA6 LINE L1 -102 6198 6051 * 2420 108 29 40 chrX 121826931 121827310 -40772620 + THE1C LTR MaLR 1 375 0 868 169 18 12 chrX 121827310 121827331 -40772599 - L1MA6 LINE L1 -249 6051 6032 1578 237 5 17 chrX 121827336 121827754 -40772176 - L1M4 LINE L1 -824 5322 4910 324 0 0 0 chrX 121827788 121827824 -40772106 + (CA)n Simple_repeat Simple_repeat 2 37 0 313 371 43 0 chrX 121827919 121828059 -40771871 - L2 LINE L2 0 3272 3127 486 33 0 0 chrX 121828286 121828346 -40771584 + (TG)n Simple_repeat Simple_repeat 2 61 0 305 353 153 25 chrX 121829604 121829839 -40770091 + L2 LINE L2 3004 3268 -4 1897 147 0 20 chrX 121830050 121830356 -40769574 - AluSx SINE Alu -12 300 1 189 107 0 0 chrX 121830948 121830976 -40768954 + (T)n Simple_repeat Simple_repeat 1 28 0 815 223 58 13 chrX 121832802 121833026 -40766904 - MER115 DNA AcHobo -2 691 458 2041 119 37 0 chrX 121833223 121833518 -40766412 - AluSx SINE Alu -6 306 1 1006 142 118 0 chrX 121833867 121834036 -40765894 - MER5A DNA MER1_type 0 189 1 718 167 234 17 chrX 121834133 121834288 -40765642 - MER33 DNA MER1_type -2261 324 204 2162 103 3 0 chrX 121834288 121834578 -40765352 + AluY SINE Alu 1 291 -20 718 167 234 17 chrX 121834578 121834661 -40765269 - MER33 DNA MER1_type -2381 204 34 308 275 127 93 chrX 121837075 121837461 -40762469 + L1M2 LINE L1 758 1156 -5693 198 143 0 0 chrX 121837640 121837675 -40762255 + (TCC)n Simple_repeat Simple_repeat 1 35 0 352 295 78 59 chrX 121837715 121837986 -40761944 + L1M2 LINE L1 876 1151 -5698 2260 111 0 3 chrX 121838364 121838670 -40761260 - AluSc SINE Alu -4 305 1 2063 106 0 48 chrX 121839159 121839471 -40760459 + AluSx SINE Alu 3 299 -13 343 172 0 16 chrX 121839490 121839554 -40760376 - MER33 DNA MER1_type -228 96 34 2116 193 63 96 chrX 121891658 121892606 -40707324 - MER65-int LTR ERV1 -2391 2480 1323 821 236 137 29 chrX 121892606 121892919 -40707011 - MER34 LTR ERV1 -162 380 34 2229 170 44 26 chrX 121893737 121894190 -40705740 - MER65C LTR ERV1 0 461 1 1759 239 32 25 chrX 121894190 121894785 -40705145 - L1M4 LINE L1 -3260 3122 2524 1173 57 0 0 chrX 121894791 121894931 -40704999 - AluY SINE Alu -6 305 166 972 180 29 105 chrX 121894932 121895030 -40704900 - L1M4 LINE L1 -3861 2521 2417 1928 161 40 11 chrX 121895030 121895410 -40704520 - L1MA4 LINE L1 0 6300 5910 972 180 29 105 chrX 121895410 121895689 -40704241 - L1M4 LINE L1 -3965 2417 2169 363 290 80 7 chrX 121895690 121895828 -40704102 - L2 LINE L2 -1017 2297 2150 25 0 0 0 chrX 121896520 121896545 -40703385 + AT_rich Low_complexity Low_complexity 1 25 0 266 283 166 10 chrX 121897726 121897884 -40702046 - MIR SINE MIR -24 238 51 626 247 6 58 chrX 121898539 121898713 -40701217 + MER5A DNA MER1_type 7 171 -18 2838 124 15 9 chrX 121899885 121900346 -40699584 - L1MA3 LINE L1 -2 6303 5840 313 171 0 154 chrX 121900346 121900376 -40699554 + MER61E LTR ERV1 1 34 -535 180 0 0 0 chrX 121900376 121900396 -40699534 + (CAA)n Simple_repeat Simple_repeat 2 21 0 313 171 0 154 chrX 121900396 121900488 -40699442 + MER61E LTR ERV1 34 104 -465 * 602 219 8 0 chrX 121900458 121900586 -40699344 + LTR25 LTR ERV1 230 358 -436 1033 166 16 0 chrX 121900682 121900869 -40699061 + MER61E LTR ERV1 342 531 -38 3592 114 10 46 chrX 121900875 121901937 -40697993 - L1MA3 LINE L1 -463 7261 6164 1316 109 48 29 chrX 121901942 121902152 -40697778 - AluSp SINE Alu -99 214 1 13047 133 23 3 chrX 121902153 121904274 -40695656 - L1MA3 LINE L1 -4871 2694 531 669 238 29 9 chrX 121904274 121904518 -40695412 + L1ME2 LINE L1 4817 5059 -1087 2294 77 0 10 chrX 121904518 121904816 -40695114 - AluY SINE Alu -16 295 1 2548 227 55 30 chrX 121904846 121905834 -40694096 + L1ME2 LINE L1 5148 6155 -9 592 172 65 24 chrX 121906189 121906358 -40693572 - MER67C LTR ERV1 0 710 535 432 196 126 69 chrX 121906390 121906545 -40693385 - MER67C LTR ERV1 -321 389 244 7397 18 0 0 chrX 121906545 121907395 -40692535 + L1PA3 LINE L1 5306 6155 0 432 196 126 69 chrX 121907395 121907560 -40692370 - MER67C LTR ERV1 -466 244 1 2245 116 0 3 chrX 121907925 121908235 -40691695 + AluSg SINE Alu 1 309 -1 688 191 96 7 chrX 121910194 121910330 -40689600 - FRAM SINE Alu -30 146 1 1706 189 30 3 chrX 121911619 121911953 -40687977 + MER2 DNA MER2_type 1 343 -1 534 235 69 20 chrX 121912335 121912539 -40687391 - MER67C LTR ERV1 0 710 497 768 217 120 64 chrX 121912545 121912904 -40687026 - MER67C LTR ERV1 -331 379 1 2142 110 0 23 chrX 121913169 121913500 -40686430 - AluSx SINE Alu 0 312 1 2371 74 3 3 chrX 121915268 121915579 -40684351 - AluY SINE Alu 0 311 1 217 279 0 0 chrX 121916088 121916131 -40683799 + L3 LINE CR1 1455 1497 -80 230 304 150 0 chrX 121918279 121918312 -40681618 - L1M4 LINE L1 -245 5933 5901 746 259 74 57 chrX 121918312 121919130 -40680800 - L1ME3A LINE L1 -285 5885 5050 3728 114 19 14 chrX 121919171 121919760 -40680170 - LTR8 LTR ERV1 -99 592 1 6288 119 12 10 chrX 121919761 121920770 -40679160 - HUERS-P1 LTR ERV1 -1 6262 5252 437 257 90 26 chrX 121920776 121921036 -40678894 - L1ME3A LINE L1 -1138 5008 4732 359 264 35 103 chrX 121921389 121921563 -40678367 + MIR SINE MIR 1 162 -100 2025 236 71 45 chrX 121921563 121922157 -40677773 - MLT1E2 LTR MaLR 0 626 18 359 267 35 0 chrX 121922194 121922280 -40677650 + MIR SINE MIR 156 244 -18 1713 194 38 53 chrX 121922478 121922952 -40676978 + MLT1C LTR MaLR 1 467 0 481 246 16 33 chrX 121923079 121923201 -40676729 + L3 LINE CR1 1282 1401 -176 437 286 109 23 chrX 121923836 121924102 -40675828 + MLT1L LTR MaLR 327 615 0 1224 151 5 0 chrX 121924190 121924375 -40675555 + MER5A DNA MER1_type 4 189 0 1593 168 21 47 chrX 121924878 121925218 -40674712 - MER44D DNA MER2_type 0 609 9 1876 109 31 177 chrX 121926779 121927163 -40672767 + Tigger2 DNA MER2_type 1 2612 -106 1949 150 21 63 chrX 121928084 121928463 -40671467 - MLT1A1 LTR MaLR -2 363 1 7931 76 7 8 chrX 121929258 121931226 -40668704 + L1PA8 LINE L1 4187 6147 -25 6692 198 22 2 chrX 121932075 121933452 -40666478 - L1M2 LINE L1 -4566 2283 880 2005 221 19 3 chrX 121933439 121934014 -40665916 - L1 LINE L1 -2612 3534 2951 * 3076 94 2 5 chrX 121934042 121934477 -40665453 + L1PB1 LINE L1 5718 6151 0 2912 130 13 6 chrX 121934482 121934959 -40664971 + L1PA13 LINE L1 5678 6157 -6 2289 239 35 30 chrX 121934982 121935736 -40664194 - L1 LINE L1 -1314 4832 4076 506 280 0 0 chrX 121935868 121935975 -40663955 + MER5A DNA MER1_type 83 189 0 21 57 0 0 chrX 121936549 121936584 -40663346 + GC_rich Low_complexity Low_complexity 1 35 0 382 336 40 0 chrX 121939736 121939885 -40660045 - MIR3 SINE MIR -5 203 49 223 261 0 15 chrX 121940285 121940350 -40659580 + CT-rich Low_complexity Low_complexity 2 65 0 207 0 0 0 chrX 121940485 121940508 -40659422 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2392 69 3 0 chrX 121940511 121940801 -40659129 - AluSg SINE Alu -19 291 1 23 0 0 0 chrX 121940862 121940885 -40659045 + AT_rich Low_complexity Low_complexity 1 23 0 1517 100 0 65 chrX 121940992 121941221 -40658709 + AluSg1 SINE Alu 1 214 -95 290 333 0 11 chrX 121941843 121941933 -40657997 + L3 LINE CR1 1060 1148 -429 520 267 46 67 chrX 121941947 121942142 -40657788 + MIR SINE MIR 21 211 -51 623 302 116 25 chrX 121942160 121942521 -40657409 + L3 LINE CR1 1153 1546 -31 871 293 50 33 chrX 121942571 121943052 -40656878 + MLT1K LTR MaLR 16 576 -12 1212 254 122 19 chrX 121944635 121945060 -40654870 + LTR33 LTR ERVL 53 521 0 195 114 0 0 chrX 121945230 121945265 -40654665 + (TA)n Simple_repeat Simple_repeat 1 35 0 388 171 73 0 chrX 121945269 121945351 -40654579 - L1PB4 LINE L1 -19 6853 6766 1456 161 39 0 chrX 121946010 121946270 -40653660 + MSTA LTR MaLR 159 428 0 12629 213 34 9 chrX 121946941 121951153 -40648777 - L1PB4 LINE L1 -197 6673 2371 954 165 33 5 chrX 121951162 121951374 -40648556 - L1 LINE L1 -1801 4345 4128 331 148 16 0 chrX 121951374 121951435 -40648495 - MER51-int LTR ERV1 -1442 6374 6313 1837 234 16 37 chrX 121951439 121952024 -40647906 - L1P LINE L1 -2484 3662 3091 2491 79 0 0 chrX 121952024 121952328 -40647602 - AluSx SINE Alu -8 304 1 1837 234 16 37 chrX 121952328 121952388 -40647542 - L1P LINE L1 -3055 3091 3031 4271 84 15 5 chrX 121952392 121952997 -40646933 - L1PB1 LINE L1 0 6151 5541 306 172 0 0 chrX 121952998 121953062 -40646868 - L1P LINE L1 -1602 4544 4481 682 137 0 68 chrX 121953064 121953131 -40646799 + L1 LINE L1 4732 4785 -1361 2322 65 38 3 chrX 121953131 121953422 -40646508 + AluY SINE Alu 1 301 -10 682 137 0 68 chrX 121953422 121953500 -40646430 + L1 LINE L1 4785 4867 -1279 453 116 0 0 chrX 121953507 121953576 -40646354 + (TA)n Simple_repeat Simple_repeat 2 70 0 228 152 0 0 chrX 121953576 121953622 -40646308 + LTR66 LTR ERVL 398 443 -167 285 279 19 0 chrX 121953625 121953729 -40646201 + L1P LINE L1 5068 5173 -973 * 3987 164 38 8 chrX 121953722 121954490 -40645440 - L1PB4 LINE L1 -6070 793 3 1393 141 44 37 chrX 121954611 121954881 -40645049 + THE1B LTR MaLR 1 272 -92 634 170 0 0 chrX 121955064 121955170 -40644760 + THE1B LTR MaLR 259 364 0 289 231 0 0 chrX 121955198 121955263 -40644667 - L1ME LINE L1 -512 5658 5594 233 300 0 23 chrX 121955286 121955416 -40644514 - L1ME LINE L1 -683 5438 5312 23 0 0 0 chrX 121955423 121955446 -40644484 + AT_rich Low_complexity Low_complexity 1 23 0 749 302 98 3 chrX 121956863 121957220 -40642710 + MLT1H1 LTR MaLR 1 391 -164 834 171 34 0 chrX 121957220 121957366 -40642564 + MER2 DNA MER2_type 1 151 -194 2441 200 33 10 chrX 121957443 121957953 -40641977 - MER82 DNA MER2_type -117 536 15 2494 73 0 0 chrX 121957953 121958254 -40641676 + AluY SINE Alu 1 301 -10 2156 219 101 8 chrX 121958290 121959409 -40640521 - L1M3 LINE L1 -403 6363 5136 1177 81 46 0 chrX 121959421 121959594 -40640336 - L1MA1 LINE L1 0 6302 6122 1260 86 5 0 chrX 121959616 121959803 -40640127 - L1MB3 LINE L1 -214 5969 5782 12588 165 12 12 chrX 121959868 121961186 -40638744 - L1MB3 LINE L1 -743 5403 4087 5197 30 7 0 chrX 121961186 121961797 -40638133 - L1PA3 LINE L1 -1 6154 5540 12588 165 12 12 chrX 121961797 121963263 -40636667 - L1MB3 LINE L1 -2059 4087 2695 5391 212 61 8 chrX 121963257 121964854 -40635076 - L1M3 LINE L1 -1574 5158 3477 * 1751 212 14 9 chrX 121964833 121965178 -40634752 - L1M3 LINE L1 -5052 1601 1255 * 672 198 0 0 chrX 121965183 121965299 -40634631 - L1M3 LINE L1 -5503 1150 1035 2443 112 11 6 chrX 121965300 121965666 -40634264 + THE1C LTR MaLR 8 375 0 1542 284 12 24 chrX 121965666 121966156 -40633774 - L1M3 LINE L1 -5561 1092 577 2532 100 50 0 chrX 121966169 121966528 -40633402 - MER51B LTR ERV1 0 377 1 9214 120 55 23 chrX 121966530 121966934 -40632996 - MER51B-int LTR ERV1 -1 7815 7425 189 0 0 0 chrX 121966934 121966955 -40632975 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 9214 120 55 23 chrX 121966955 121968355 -40631575 - MER51B-int LTR ERV1 -391 7425 6071 2243 99 0 7 chrX 121968355 121968657 -40631273 + AluSx SINE Alu 1 300 -12 2562 45 0 3 chrX 121968657 121968969 -40630961 + AluY SINE Alu 1 311 0 9214 120 55 23 chrX 121968969 121969104 -40630826 - MER51B-int LTR ERV1 -1744 6072 5620 526 178 0 0 chrX 121969094 121969195 -40630735 - MER51B-int LTR ERV1 -2188 5349 5249 * 1960 80 69 13 chrX 121969194 121969560 -40630370 - MER51B-int LTR ERV1 -2043 5375 2341 1953 191 50 27 chrX 121969551 121970032 -40629898 - MER51B-int LTR ERV1 -3250 1967 1476 * 5651 105 45 3 chrX 121970044 121971418 -40628512 - MER51B-int LTR ERV1 -4551 3265 1805 673 152 49 67 chrX 121971421 121971625 -40628305 - MER4A LTR ERV1 -130 534 276 249 167 0 0 chrX 121971630 121971678 -40628252 - MER4A LTR ERV1 -566 98 51 4270 135 21 4 chrX 121971694 121973083 -40626847 - MER51B-int LTR ERV1 -6321 1495 1 2011 96 55 86 chrX 121973085 121973335 -40626595 - MER51B LTR ERV1 -5 372 137 3657 125 23 5 chrX 121973335 121973905 -40626025 + LTR22 LTR ERVK 1 580 0 2011 96 55 86 chrX 121973905 121974038 -40625892 - MER51B LTR ERV1 -240 137 1 378 304 11 33 chrX 121974082 121974263 -40625667 - L1M3d LINE L1 -5712 1376 1200 2511 219 54 42 chrX 121974269 121974452 -40625478 - L1M4 LINE L1 -5356 1186 1007 1455 171 164 93 chrX 121974452 121975001 -40624929 + LTR4 LTR ERV1 1 588 0 2511 219 54 42 chrX 121975001 121975644 -40624286 - L1M4 LINE L1 -5535 1007 350 242 344 0 0 chrX 121975697 121975787 -40624143 - L1M4 LINE L1 -6275 267 178 1265 314 35 20 chrX 121976121 121976734 -40623196 - L1M3d LINE L1 -6154 1014 2 183 42 0 0 chrX 121977477 121977501 -40622429 + (GA)n Simple_repeat Simple_repeat 1 24 0 2241 91 31 0 chrX 121977541 121977827 -40622103 - AluSg SINE Alu -15 295 1 348 295 65 43 chrX 121978303 121978442 -40621488 - MIR SINE MIR -105 157 16 341 239 128 0 chrX 121978519 121978628 -40621302 - MIR SINE MIR -18 244 122 978 240 26 39 chrX 121978844 121979152 -40620778 + LTR40a LTR ERVL 216 519 0 882 281 96 8 chrX 121979210 121979566 -40620364 - L1MEc LINE L1 -5973 423 37 38 0 0 0 chrX 121979743 121979781 -40620149 + AT_rich Low_complexity Low_complexity 1 38 0 2046 125 0 20 chrX 121979781 121980084 -40619846 - AluSx SINE Alu -15 297 1 318 358 73 8 chrX 121980876 121980999 -40618931 + L2 LINE L2 3134 3264 -8 2255 94 3 10 chrX 121981283 121981591 -40618339 - AluSg SINE Alu -4 306 1 387 282 0 46 chrX 121981614 121981745 -40618185 + MER5A DNA MER1_type 64 188 -1 317 148 0 0 chrX 121981944 121981998 -40617932 - L1MC1 LINE L1 -6 6327 6274 40 37 0 0 chrX 121983293 121983347 -40616583 + AT_rich Low_complexity Low_complexity 1 54 0 2472 68 0 0 chrX 121983491 121983800 -40616130 - AluY SINE Alu -2 309 1 1768 179 67 71 chrX 121983805 121984312 -40615618 - MLT1D LTR MaLR 0 505 1 2053 91 18 0 chrX 121984408 121984683 -40615247 + AluSg SINE Alu 1 280 -30 442 244 15 38 chrX 121984697 121984828 -40615102 + MIR SINE MIR 5 132 -130 353 224 252 0 chrX 121985152 121985259 -40614671 - MER94 DNA DNA 0 134 1 866 180 87 97 chrX 121985489 121985963 -40613967 + MLT1B LTR MaLR 3 390 0 332 280 184 8 chrX 121985977 121986102 -40613828 + MER5A DNA MER1_type 43 189 0 2304 107 3 0 chrX 121986163 121986473 -40613457 - AluSp SINE Alu -2 311 1 2161 95 3 10 chrX 121987144 121987333 -40612597 - AluSp SINE Alu 0 313 135 2507 69 0 0 chrX 121987333 121987637 -40612293 - AluY SINE Alu -7 304 1 2161 95 3 10 chrX 121987637 121987772 -40612158 - AluSp SINE Alu -178 135 1 2257 152 45 26 chrX 121988037 121988457 -40611473 - MSTA LTR MaLR 0 428 1 8733 175 33 4 chrX 121988457 121990060 -40609870 - MSTA-int LTR MaLR 0 1651 2 2015 148 135 5 chrX 121990061 121990440 -40609490 - MSTA LTR MaLR 0 428 1 564 224 17 0 chrX 121990745 121990861 -40609069 - MIR SINE MIR -48 214 97 315 270 74 81 chrX 121990957 121991105 -40608825 + MIR3 SINE MIR 51 197 -11 584 198 0 0 chrX 121991117 121991223 -40608707 - MER3 DNA MER1_type -102 107 2 637 326 99 63 chrX 121993298 121994143 -40605787 - L2 LINE L2 0 3272 2406 201 203 16 78 chrX 121994180 121994244 -40605686 + L2 LINE L2 3246 3305 -8 331 262 87 82 chrX 121994491 121994697 -40605233 - MIR SINE MIR 0 262 56 278 286 16 0 chrX 121995664 121995727 -40604203 - L2 LINE L2 -217 3055 2992 492 264 178 6 chrX 121997106 121997280 -40602650 - MIR SINE MIR -3 259 56 289 62 21 0 chrX 121997293 121997341 -40602589 - L1MB2 LINE L1 -3 6168 6120 4945 126 7 60 chrX 121997372 121998327 -40601603 - L1PA16 LINE L1 -2 6164 5260 22 35 0 0 chrX 121998339 121998368 -40601562 + AT_rich Low_complexity Low_complexity 1 29 0 6723 104 29 11 chrX 121998381 121999430 -40600500 + L1PBa LINE L1 4 1070 -5793 722 87 0 55 chrX 121999430 121999557 -40600373 + L1PB1 LINE L1 6031 6150 -1 2831 248 46 21 chrX 121999592 122000449 -40599481 - L1ME1 LINE L1 -50 6116 5228 2200 96 0 23 chrX 122000449 122000752 -40599178 - AluY SINE Alu -15 296 1 2831 248 46 21 chrX 122000752 122000896 -40599034 - L1ME1 LINE L1 -938 5228 5089 606 227 9 40 chrX 122000955 122001180 -40598750 - L1MB8 LINE L1 -2 6176 5959 3114 127 2 27 chrX 122001224 122001735 -40598195 - L1MB2 LINE L1 -8 6163 5666 1021 228 38 49 chrX 122001736 122001908 -40598022 - L1ME1 LINE L1 -1227 4919 4747 2231 98 16 0 chrX 122001908 122002214 -40597716 - AluY SINE Alu 0 311 1 1021 228 38 49 chrX 122002214 122002511 -40597419 - L1ME1 LINE L1 -1399 4747 4455 219 347 0 13 chrX 122002556 122002631 -40597299 - MER5A DNA MER1_type -95 94 21 602 302 73 22 chrX 122002885 122002940 -40596990 - MIR SINE MIR -4 258 207 14746 121 47 5 chrX 122002940 122005259 -40594671 - Tigger1 DNA MER2_type -1 2417 1 602 302 73 22 chrX 122005259 122005370 -40594560 - MIR SINE MIR -55 207 74 2512 59 0 3 chrX 122005370 122005675 -40594255 + AluY SINE Alu 1 304 -7 602 302 73 22 chrX 122005675 122005739 -40594191 - MIR SINE MIR -188 74 15 1318 219 28 77 chrX 122005740 122006170 -40593760 - MLT1I LTR MaLR 0 409 1 302 314 48 100 chrX 122006714 122006924 -40593006 - MIR SINE MIR -62 200 2 2290 114 7 0 chrX 122007002 122007308 -40592622 + AluSq SINE Alu 1 308 -5 305 267 163 47 chrX 122008517 122008689 -40591241 - MIR SINE MIR -49 213 22 234 184 0 0 chrX 122009253 122009302 -40590628 - HSMAR2 DNA Mariner -1137 165 117 1976 129 35 0 chrX 122009336 122009622 -40590308 + AluSq SINE Alu 1 296 -17 522 307 127 18 chrX 122009673 122009956 -40589974 + L2 LINE L2 2214 2527 -787 688 216 69 15 chrX 122009957 122010161 -40589769 + L1MB7 LINE L1 5970 6184 0 21 36 0 0 chrX 122010406 122010434 -40589496 + AT_rich Low_complexity Low_complexity 1 28 0 591 281 123 20 chrX 122010434 122010637 -40589293 - MIR SINE MIR -11 251 28 1381 156 42 105 chrX 122010947 122011162 -40588768 - L1MB8 LINE L1 -420 5822 5595 2377 71 0 3 chrX 122011162 122011459 -40588471 - AluY SINE Alu -15 296 1 1381 156 42 105 chrX 122011459 122011852 -40588078 - L1MB8 LINE L1 -647 5595 5179 195 42 0 0 chrX 122011852 122011876 -40588054 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1797 105 78 4 chrX 122011878 122012136 -40587794 - AluSx SINE Alu -35 277 1 1381 156 42 105 chrX 122012136 122012211 -40587719 - L1MB8 LINE L1 -925 5317 5239 1014 253 35 14 chrX 122012209 122012557 -40587373 - L1MB8 LINE L1 -1213 4933 4579 * 471 227 84 0 chrX 122012557 122012676 -40587254 + MLT1A2 LTR MaLR 1 129 -245 2394 164 46 5 chrX 122012677 122013109 -40586821 + MSTB2 LTR MaLR 1 450 -7 2534 225 81 6 chrX 122013191 122013842 -40586088 - L1MDa LINE L1 -5598 942 19 2450 96 0 0 chrX 122013866 122014169 -40585761 + AluSx SINE Alu 2 304 -8 532 303 87 35 chrX 122014170 122014457 -40585473 - L1M4 LINE L1 -1112 5034 4733 2136 122 0 0 chrX 122014949 122015243 -40584687 - AluSx SINE Alu -18 294 1 22 0 0 0 chrX 122015360 122015382 -40584548 + AT_rich Low_complexity Low_complexity 1 22 0 394 304 76 19 chrX 122015489 122015647 -40584283 + L2 LINE L2 2231 2397 -917 2267 99 0 37 chrX 122015649 122015971 -40583959 - AluSg SINE Alu 0 310 1 516 325 7 7 chrX 122016049 122016200 -40583730 + L2 LINE L2 2620 2770 -544 437 355 60 33 chrX 122016239 122016571 -40583359 + L2 LINE L2 2477 2817 -497 231 265 67 53 chrX 122016812 122016913 -40583017 - L1M4 LINE L1 -2147 3999 3901 1707 180 18 80 chrX 122016913 122017302 -40582628 - MLT1A1 LTR MaLR 0 365 1 231 265 67 53 chrX 122017302 122017483 -40582447 - L1M4 LINE L1 -2245 3901 3713 305 333 142 28 chrX 122017625 122017766 -40582164 + L2 LINE L2 3116 3272 0 333 291 12 0 chrX 122017842 122017928 -40582002 - MIR SINE MIR -115 147 61 448 300 91 86 chrX 122018250 122018600 -40581330 + L2 LINE L2 2921 3272 0 448 257 44 37 chrX 122019091 122019227 -40580703 + L2 LINE L2 3134 3270 -2 2379 59 3 30 chrX 122019396 122019700 -40580230 + AluY SINE Alu 1 296 -15 420 298 70 0 chrX 122019972 122020086 -40579844 + L2 LINE L2 3192 3313 0 315 0 0 0 chrX 122020116 122020151 -40579779 + (TC)n Simple_repeat Simple_repeat 2 36 0 516 312 87 9 chrX 122020174 122020392 -40579538 - MIR SINE MIR 0 262 28 4232 104 3 0 chrX 122020760 122021354 -40578576 - L1PA10 LINE L1 -8 6160 5565 22 0 0 0 chrX 122021588 122021610 -40578320 + AT_rich Low_complexity Low_complexity 1 22 0 2681 73 53 0 chrX 122021837 122022195 -40577735 - MER51B LTR ERV1 0 377 1 7791 141 42 27 chrX 122022197 122024228 -40575702 - MER51B-int LTR ERV1 0 7816 5758 1794 92 42 4 chrX 122024227 122024604 -40575326 - MER51B-int LTR ERV1 -2572 2645 2210 * 2142 135 178 7 chrX 122024583 122025043 -40574887 - MER51B-int LTR ERV1 -2579 3367 2829 * 9317 127 88 65 chrX 122025037 122025256 -40574674 - MER51B-int LTR ERV1 -4501 3315 3103 2296 82 3 0 chrX 122025256 122025548 -40574382 + AluY SINE Alu 3 295 -16 9317 127 88 65 chrX 122025548 122026006 -40573924 - MER51B-int LTR ERV1 -4713 3103 2657 2312 114 11 9 chrX 122026006 122026356 -40573574 - THE1A LTR MaLR 0 355 5 11670 93 8 2 chrX 122026358 122027929 -40572001 - THE1A-int LTR MaLR 0 1580 1 2135 128 8 38 chrX 122027929 122027969 -40571961 - THE1A LTR MaLR 0 355 315 2224 115 0 0 chrX 122027969 122028265 -40571665 + AluSx SINE Alu 1 296 -16 2135 128 8 38 chrX 122028265 122028590 -40571340 - THE1A LTR MaLR -40 315 1 9317 127 88 65 chrX 122028590 122028891 -40571039 - MER51B-int LTR ERV1 -5159 2657 2365 2031 115 0 48 chrX 122028891 122029203 -40570727 - AluSx SINE Alu -15 297 1 9317 127 88 65 chrX 122029203 122031007 -40568923 - MER51B-int LTR ERV1 -5451 2365 379 872 153 0 0 chrX 122031042 122031199 -40568731 + AluSg/x SINE Alu 170 310 0 1759 86 4 0 chrX 122031201 122031444 -40568486 - MER51B-int LTR ERV1 -7572 244 1 2605 83 50 3 chrX 122031444 122031804 -40568126 - MER51B LTR ERV1 0 377 1 267 192 14 41 chrX 122032233 122032306 -40567624 + CT-rich Low_complexity Low_complexity 2 72 0 713 286 5 32 chrX 122032640 122032860 -40567070 - MIR SINE MIR -31 231 18 272 196 18 0 chrX 122033977 122034033 -40565897 - MER20 DNA MER1_type 0 219 163 1230 117 146 12 chrX 122034230 122034477 -40565453 - L1MA8 LINE L1 -3 6288 6009 463 255 152 30 chrX 122035023 122035254 -40564676 + MIR SINE MIR 2 260 -2 230 250 0 0 chrX 122036954 122036998 -40562932 + polypurine Low_complexity Low_complexity 2 45 0 1208 176 32 129 chrX 122037065 122037469 -40562461 + MLT1A1 LTR MaLR 1 365 0 2081 130 0 34 chrX 122038182 122038504 -40561426 - AluSx SINE Alu -1 311 1 404 240 226 7 chrX 122038945 122039091 -40560839 - MIR SINE MIR -7 255 78 709 254 115 18 chrX 122039951 122040168 -40559762 + MIR SINE MIR 13 250 -12 3293 121 69 2 chrX 122040261 122040780 -40559150 + MER41C LTR ERV1 1 554 0 6408 65 46 3 chrX 122040866 122041756 -40558174 + MER41C-int LTR ERV1 3 930 -6826 * 10052 67 20 4 chrX 122041748 122043118 -40556812 + MER41C-int LTR ERV1 1363 2754 -5002 1447 76 5 0 chrX 122043116 122043314 -40556616 + MER41C-int LTR ERV1 6166 6364 -1392 * 8304 93 14 17 chrX 122043308 122044558 -40555372 + MER41C-int LTR ERV1 6505 7750 -6 3316 104 67 35 chrX 122044564 122044975 -40554955 + MER41C LTR ERV1 1 434 -120 2405 56 26 0 chrX 122044975 122045278 -40554652 - AluY SINE Alu 0 311 1 3316 104 67 35 chrX 122045278 122045403 -40554527 + MER41C LTR ERV1 434 554 0 190 333 0 0 chrX 122045547 122045598 -40554332 + L2 LINE L2 3213 3263 -9 255 244 13 26 chrX 122046609 122046687 -40553243 + GA-rich Low_complexity Low_complexity 2 78 0 342 381 62 16 chrX 122046688 122046932 -40552998 + L2 LINE L2 2611 2865 -449 323 361 139 4 chrX 122046974 122047240 -40552690 + L2 LINE L2 2871 3172 -100 185 302 0 0 chrX 122047689 122047732 -40552198 + L2 LINE L2 3150 3192 -80 220 290 48 0 chrX 122049398 122049460 -40550470 + MER5A DNA MER1_type 124 188 -1 191 319 126 0 chrX 122051111 122051230 -40548700 + MIR SINE MIR 28 161 -101 383 278 0 61 chrX 122051369 122051484 -40548446 - MIR SINE MIR -131 131 24 678 284 37 41 chrX 122051617 122051835 -40548095 + MIR SINE MIR 45 261 -1 378 0 0 0 chrX 122051933 122051975 -40547955 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chrX 122051989 122052011 -40547919 + AT_rich Low_complexity Low_complexity 1 22 0 754 239 59 68 chrX 122052290 122052369 -40547561 - MIR SINE MIR 0 262 184 2471 87 3 0 chrX 122052369 122052680 -40547250 - AluSp SINE Alu -1 312 1 754 239 59 68 chrX 122052680 122052822 -40547108 - MIR SINE MIR -78 184 43 3576 123 17 10 chrX 122053148 122053726 -40546204 - L1PA16 LINE L1 -2 6164 5583 567 260 16 91 chrX 122053847 122054089 -40545841 + L3 LINE CR1 1160 1383 -194 477 114 0 0 chrX 122054112 122054191 -40545739 - L1MA4 LINE L1 -6 6294 6216 22 56 0 0 chrX 122054333 122054369 -40545561 + AT_rich Low_complexity Low_complexity 1 36 0 382 313 8 8 chrX 122056099 122056233 -40543697 - MIR SINE MIR -80 182 49 2139 115 3 19 chrX 122056911 122057225 -40542705 - AluSx SINE Alu -3 309 1 238 163 0 61 chrX 122057443 122057492 -40542438 - tRNA-Asp-GAC tRNA tRNA -28 47 2 1051 215 23 14 chrX 122058339 122058558 -40541372 + MER58A DNA MER1_type 4 224 0 335 354 25 6 chrX 122058662 122058823 -40541107 - MIR SINE MIR -3 259 96 278 343 57 0 chrX 122058835 122058905 -40541025 - MIR SINE MIR -141 121 48 3761 204 56 4 chrX 122058912 122060179 -40539751 - L1MB4 LINE L1 0 6416 5084 626 241 73 0 chrX 122060179 122060316 -40539614 + AluJb SINE Alu 136 282 -30 2602 243 18 31 chrX 122060320 122061208 -40538722 - L1MB4 LINE L1 -1285 5097 4222 653 198 76 0 chrX 122061200 122061376 -40538554 - L1MB4 LINE L1 -4537 1776 1212 * 575 115 68 0 chrX 122061442 122061590 -40538340 + (TA)n Simple_repeat Simple_repeat 1 158 0 320 148 0 49 chrX 122061594 122061655 -40538275 - L1MC4 LINE L1 -1338 6704 6647 30 0 0 0 chrX 122061673 122061703 -40538227 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 122061751 122061774 -40538156 + AT_rich Low_complexity Low_complexity 1 23 0 390 111 0 0 chrX 122061935 122061998 -40537932 - L1MB8 LINE L1 -51 6127 6065 948 186 83 19 chrX 122061998 122062306 -40537624 - MSTD LTR MaLR 0 396 19 2801 209 39 16 chrX 122062311 122063037 -40536893 - L1MB7 LINE L1 -120 6064 5323 402 113 0 0 chrX 122063037 122063099 -40536831 - Alu SINE Alu -7 304 243 1351 112 0 0 chrX 122063219 122063407 -40536523 - AluY SINE Alu -5 306 119 2775 19 0 0 chrX 122063414 122063722 -40536208 - AluYa5 SINE Alu -3 308 1 1931 236 27 7 chrX 122063723 122064308 -40535622 - L1MB7 LINE L1 -815 5331 4735 1957 99 18 21 chrX 122064404 122064688 -40535242 - AluSq SINE Alu -19 294 12 745 232 45 11 chrX 122064769 122064946 -40534984 + MLT1D LTR MaLR 255 437 -68 5271 159 15 14 chrX 122064968 122065348 -40534582 - L1PB2 LINE L1 -2 6206 5828 1977 78 0 22 chrX 122065348 122065617 -40534313 - AluY SINE Alu -1 310 48 5271 159 15 14 chrX 122065617 122066815 -40533115 - L1PB2 LINE L1 -380 5828 4626 5116 165 33 6 chrX 122066812 122068481 -40531449 - L1PB2 LINE L1 -4481 1723 8 * 7757 184 16 17 chrX 122068448 122068486 -40531444 - L1PBa LINE L1 -5219 985 948 2090 118 0 30 chrX 122068486 122068790 -40531140 - AluSg SINE Alu -15 295 1 7757 184 16 17 chrX 122068790 122070313 -40529617 - L1PBa LINE L1 -5256 948 -574 262 240 0 0 chrX 122070342 122070392 -40529538 - L1M4b LINE L1 -6792 67 18 611 275 70 13 chrX 122070678 122070907 -40529023 - MLT1J LTR MaLR 0 511 270 21 0 0 0 chrX 122070907 122070928 -40529002 + AT_rich Low_complexity Low_complexity 1 21 0 363 244 0 0 chrX 122070935 122071025 -40528905 - L1ME1 LINE L1 -5 6161 6072 747 261 16 1 chrX 122071051 122071245 -40528685 - MLT1J LTR MaLR -289 181 1 2670 116 3 0 chrX 122071325 122071704 -40528226 - L1PA11 LINE L1 0 6174 5795 270 269 0 0 chrX 122072110 122072162 -40527768 + L2 LINE L2 3205 3256 -16 1243 282 105 43 chrX 122072208 122072371 -40527559 + L2 LINE L2 2446 2597 -716 3386 102 14 8 chrX 122072371 122072860 -40527070 + LTR22B LTR ERVK 1 492 0 1243 282 105 43 chrX 122072860 122073509 -40526421 + L2 LINE L2 2597 3313 0 2077 165 96 15 chrX 122073555 122073949 -40525981 - MSTB LTR MaLR 0 426 1 1367 263 66 5 chrX 122073972 122074382 -40525548 - LTR16A LTR ERVL -7 443 9 2163 99 0 43 chrX 122075581 122075885 -40524045 - AluSg1 SINE Alu -18 291 1 799 243 11 11 chrX 122075907 122076084 -40523846 - MIR SINE MIR 0 262 86 * 3686 254 74 20 chrX 122076083 122077455 -40522475 - L2 LINE L2 0 3313 1829 204 97 0 0 chrX 122077733 122077764 -40522166 + (TG)n Simple_repeat Simple_repeat 2 32 0 262 195 26 0 chrX 122077765 122077842 -40522088 + GA-rich Low_complexity Low_complexity 2 80 0 548 305 13 13 chrX 122079297 122079451 -40520479 + MIR3 SINE MIR 16 169 -39 358 309 57 46 chrX 122079443 122079618 -40520312 - MER5A DNA MER1_type -6 183 7 * 242 306 0 0 chrX 122079612 122079661 -40520269 + L3 LINE CR1 1516 1564 -13 * 671 257 17 0 chrX 122080197 122080372 -40519558 + MER5B DNA MER1_type 1 178 0 1933 59 92 48 chrX 122080476 122080787 -40519143 - AluY SINE Alu 0 324 2 2359 107 8 6 chrX 122080971 122081325 -40518605 + THE1A LTR MaLR 1 355 0 273 233 48 82 chrX 122081887 122082033 -40517897 + L2 LINE L2 3118 3258 -55 2310 59 0 0 chrX 122082148 122082438 -40517492 - L1PA6 LINE L1 0 6154 5865 207 413 0 0 chrX 122082514 122082594 -40517336 - MIR SINE MIR -92 116 37 2906 0 0 0 chrX 122084513 122084824 -40515106 + AluYa5 SINE Alu 1 311 0 304 260 126 0 chrX 122085162 122085289 -40514641 - L1ME4a LINE L1 -68 6053 5911 396 0 0 0 chrX 122085448 122085492 -40514438 + (CA)n Simple_repeat Simple_repeat 2 45 0 297 292 16 23 chrX 122085600 122085742 -40514188 - L1ME4a LINE L1 -305 5816 5673 4077 127 12 84 chrX 122085983 122086395 -40513535 + LTR25 LTR ERV1 1 322 -472 2276 100 0 10 chrX 122086395 122086705 -40513225 + AluSg SINE Alu 1 307 -3 4077 127 12 84 chrX 122086705 122087137 -40512793 + LTR25 LTR ERV1 322 784 -10 430 264 89 75 chrX 122087207 122087790 -40512140 + HAL1b LINE L1 230 820 -528 21 36 0 0 chrX 122087881 122087909 -40512021 + AT_rich Low_complexity Low_complexity 1 28 0 327 241 0 45 chrX 122088040 122088152 -40511778 + L1M4 LINE L1 2144 2250 -3896 317 321 0 36 chrX 122088182 122088551 -40511379 + (TA)n Simple_repeat Simple_repeat 1 355 0 * 335 293 0 63 chrX 122088545 122088736 -40511194 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 429 265 0 48 chrX 122088627 122088816 -40511114 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 234 0 0 chrX 122088963 122089010 -40510920 - MER3 DNA MER1_type -4 205 159 8765 169 17 16 chrX 122089022 122089385 -40510545 - L1PB3 LINE L1 -2 6334 5973 423 98 0 0 chrX 122089385 122089446 -40510484 + (TA)n Simple_repeat Simple_repeat 1 61 0 8765 169 17 16 chrX 122089446 122091933 -40507997 - L1PB3 LINE L1 -363 5973 3485 368 242 0 0 chrX 122094215 122094335 -40505595 - L1PB3 LINE L1 -2848 3480 3361 * 15378 181 30 26 chrX 122094331 122096282 -40503648 - L1 LINE L1 -2413 5152 3210 756 102 0 0 chrX 122096282 122096403 -40503527 - AluSg/x SINE Alu 0 304 184 15378 181 30 26 chrX 122096403 122098978 -40500952 - L1 LINE L1 -4355 3210 511 1689 205 40 42 chrX 122098980 122099014 -40500916 - L1 LINE L1 -7145 420 387 2487 147 47 2 chrX 122099014 122099422 -40500508 + MSTA LTR MaLR 1 426 -2 1689 205 40 42 chrX 122099422 122099792 -40500138 - L1 LINE L1 -7178 387 17 6809 187 26 34 chrX 122099797 122100683 -40499247 - L1PB3 LINE L1 -3898 2430 1538 2391 60 3 3 chrX 122100683 122100983 -40498947 - AluY SINE Alu -11 300 1 6809 187 26 34 chrX 122100983 122102570 -40497360 - L1PB3 LINE L1 -4790 1538 1 2412 70 0 7 chrX 122102856 122103158 -40496772 + AluY SINE Alu 1 300 -11 2129 68 103 0 chrX 122103334 122103615 -40496315 - AluY SINE Alu -1 310 1 216 97 0 0 chrX 122103670 122103701 -40496229 + (GA)n Simple_repeat Simple_repeat 1 31 0 2471 91 0 0 chrX 122103909 122104217 -40495713 - AluSg SINE Alu -2 308 1 709 145 0 8 chrX 122104335 122104452 -40495478 + AluJb SINE Alu 1 116 -196 339 279 34 34 chrX 122104510 122104689 -40495241 - HAL1b LINE L1 -470 878 700 665 254 84 46 chrX 122104855 122105225 -40494705 - HAL1b LINE L1 -860 488 105 293 344 79 47 chrX 122105504 122105719 -40494211 + L2 LINE L2 2998 3219 -53 213 65 0 0 chrX 122106323 122106354 -40493576 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 388 35 17 chrX 122107321 122107437 -40492493 + L2 LINE L2 2943 3060 -212 849 228 35 39 chrX 122107453 122107685 -40492245 + MIR SINE MIR 32 262 0 908 240 73 9 chrX 122107783 122108016 -40491914 + MIR SINE MIR 3 250 -12 215 196 20 39 chrX 122108045 122108096 -40491834 + L2 LINE L2 3219 3268 -4 184 291 18 0 chrX 122108289 122108344 -40491586 - MIR SINE MIR -6 256 201 1123 312 85 23 chrX 122108346 122108812 -40491118 + L2 LINE L2 2140 2644 -670 1862 81 8 35 chrX 122108812 122109073 -40490857 - AluSp SINE Alu -17 296 43 1123 312 85 23 chrX 122109073 122109135 -40490795 + L2 LINE L2 2644 2701 -613 522 244 6 55 chrX 122109140 122109304 -40490626 - L1ME3 LINE L1 0 6162 6007 321 377 66 5 chrX 122109635 122109847 -40490083 + L2 LINE L2 2693 2917 -397 389 299 0 34 chrX 122110087 122110204 -40489726 + L2 LINE L2 3197 3309 -4 641 264 42 18 chrX 122110209 122110397 -40489533 - MIR SINE MIR -65 143 3 751 306 36 4 chrX 122111242 122111494 -40488436 - MIR SINE MIR -1 261 2 324 263 0 0 chrX 122111703 122111779 -40488151 - MIR SINE MIR -1 261 186 5439 124 30 20 chrX 122112841 122113086 -40486844 - L1MA3 LINE L1 -10 6295 6054 2140 131 3 0 chrX 122113086 122113377 -40486553 - AluSq SINE Alu -21 292 1 5439 124 30 20 chrX 122113377 122114094 -40485836 - L1MA3 LINE L1 -251 6054 5323 2119 116 25 3 chrX 122114094 122114421 -40485509 - L1PA13 LINE L1 -4 6159 5826 19786 176 26 14 chrX 122164421 122164616 -40435314 - L1 LINE L1 -2960 4605 4414 2365 99 0 0 chrX 122164616 122164910 -40435020 - AluSg SINE Alu -14 296 3 19786 176 26 14 chrX 122164910 122165963 -40433967 - L1 LINE L1 -3151 4414 3375 2157 96 10 7 chrX 122165963 122166255 -40433675 - AluSx SINE Alu -19 293 1 19786 176 26 14 chrX 122166255 122169538 -40430392 - L1 LINE L1 -4190 3375 15 411 276 0 0 chrX 122169817 122169904 -40430026 + MIR SINE MIR 155 241 -21 215 211 0 0 chrX 122169954 122169992 -40429938 + (TG)n Simple_repeat Simple_repeat 2 39 0 2599 48 0 7 chrX 122170404 122170714 -40429216 - AluY SINE Alu -3 308 1 197 195 0 0 chrX 122170722 122170763 -40429167 - MIR SINE MIR -107 155 115 217 246 92 31 chrX 122172454 122172519 -40427411 - L2 LINE L2 -1 3271 3203 328 316 50 0 chrX 122172636 122172775 -40427155 - L1ME4a LINE L1 -22 6099 5954 198 188 0 0 chrX 122173445 122173477 -40426453 + L2 LINE L2 3248 3279 -34 21 36 0 0 chrX 122174650 122174678 -40425252 + AT_rich Low_complexity Low_complexity 1 28 0 209 246 0 18 chrX 122174975 122175032 -40424898 + (TA)n Simple_repeat Simple_repeat 1 56 0 2758 211 15 28 chrX 122175079 122175690 -40424240 - MER77 LTR ERV1 -2 603 1 26 50 0 0 chrX 122176629 122176669 -40423261 + AT_rich Low_complexity Low_complexity 1 40 0 944 207 67 10 chrX 122177299 122177590 -40422340 - L1ME LINE L1 -642 5520 5204 2828 127 44 10 chrX 122177597 122178095 -40421835 - L1MA9 LINE L1 0 6312 5798 420 20 0 0 chrX 122178095 122178144 -40421786 + (CA)n Simple_repeat Simple_repeat 2 50 0 1725 130 48 20 chrX 122178144 122178436 -40421494 - MER46B DNA MER2_type -2 234 60 8192 13 0 0 chrX 122178444 122180166 -40419764 - L1HS LINE L1 0 6155 4434 * 20396 29 0 0 chrX 122180165 122182624 -40417306 + L1HS LINE L1 1990 4448 -1698 313 212 0 0 chrX 122182624 122182690 -40417240 - MER46B DNA MER2_type -295 66 1 4055 180 20 3 chrX 122182690 122183896 -40416034 - L1MA9 LINE L1 -529 5783 4558 2181 186 8 1 chrX 122183903 122184387 -40415543 + L1PA13 LINE L1 1840 2337 -4460 6314 92 19 0 chrX 122184387 122185949 -40413981 + L1PA10 LINE L1 4579 6165 -3 7156 214 58 9 chrX 122185949 122187536 -40412394 - L1MA9 LINE L1 -1532 4614 2915 1781 176 0 0 chrX 122187536 122187825 -40412105 - AluSx SINE Alu 0 312 24 7156 214 58 9 chrX 122187825 122188152 -40411778 - L1MA9 LINE L1 -3231 2915 2606 392 193 43 143 chrX 122188157 122188457 -40411473 - L1MDa LINE L1 -2852 3363 3094 189 0 0 0 chrX 122188458 122188479 -40411451 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7409 23 1 0 chrX 122188479 122189343 -40410587 - L1PA3 LINE L1 -6 6149 5285 3030 226 75 9 chrX 122189326 122190171 -40409759 - L1 LINE L1 -3129 3719 2820 * 1536 186 161 11 chrX 122190173 122190545 -40409385 + MSTA LTR MaLR 1 428 0 2256 134 6 0 chrX 122190545 122190903 -40409027 + MSTA-int LTR MaLR 1 360 -1291 * 7915 207 32 8 chrX 122190902 122191581 -40408349 + L1MA2 LINE L1 2921 3583 -4140 225 0 0 0 chrX 122191581 122191606 -40408324 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1959 59 0 0 chrX 122191607 122191845 -40408085 - AluY SINE Alu -73 238 1 7915 207 32 8 chrX 122191845 122195832 -40404098 + L1MA2 LINE L1 3582 7723 0 3961 256 23 89 chrX 122195845 122197852 -40402078 - L1 LINE L1 -5058 1791 12 5964 213 36 20 chrX 122197854 122201511 -40398419 - L1 LINE L1 -2629 3699 7 577 284 110 20 chrX 122201519 122202451 -40397479 - L1MDa LINE L1 -3213 3635 2668 308 289 37 37 chrX 122202593 122202839 -40397091 - L1MDa LINE L1 -4584 2445 2200 494 247 111 57 chrX 122203011 122203313 -40396617 - L1MDa LINE L1 -4791 2057 1665 2212 111 3 0 chrX 122203313 122203610 -40396320 + AluSq SINE Alu 1 298 -15 494 247 111 57 chrX 122203610 122203777 -40396153 - L1MDa LINE L1 -5183 1665 1509 236 333 101 0 chrX 122204622 122204751 -40395179 - L2 LINE L2 -202 3070 2929 491 273 39 7 chrX 122208254 122208408 -40391522 + MER45A DNA AcHobo 20 178 0 2025 108 0 37 chrX 122209296 122209591 -40390339 - AluSx SINE Alu -20 292 9 734 205 0 0 chrX 122209705 122209832 -40390098 - FLAM_A SINE Alu -6 127 1 1855 199 133 2 chrX 122210100 122210543 -40389387 + MLT1D LTR MaLR 5 505 0 2394 94 0 0 chrX 122211570 122211877 -40388053 + AluSg SINE Alu 2 308 -2 447 314 17 34 chrX 122212483 122212658 -40387272 + MIR SINE MIR 20 191 -71 1019 293 19 44 chrX 122213181 122213594 -40386336 - MLT1I LTR MaLR 0 409 7 6598 25 2 0 chrX 122213880 122215102 -40384828 - L1P1 LINE L1 -355 5800 4576 1973 34 0 0 chrX 122215102 122215335 -40384595 + L1PA3 LINE L1 5919 6152 -3 319 273 50 50 chrX 122215438 122215452 -40384478 - L2 LINE L2 0 3272 3259 336 102 0 0 chrX 122215452 122215501 -40384429 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 319 273 50 50 chrX 122215501 122215585 -40384345 - L2 LINE L2 -12 3260 3174 229 139 116 0 chrX 122216037 122216080 -40383850 - L2 LINE L2 -25 3247 3200 519 17 0 0 chrX 122219312 122219372 -40380558 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1939 160 3 0 chrX 122219373 122219655 -40380275 - AluSx SINE Alu -29 283 1 532 309 55 10 chrX 122219748 122219949 -40379981 - MIR SINE MIR -1 261 52 200 377 85 14 chrX 122220011 122220321 -40379609 + L2 LINE L2 2716 3048 -224 1995 140 11 0 chrX 122221268 122221574 -40378356 + AluSx SINE Alu 1 309 0 198 235 167 69 chrX 122221600 122221702 -40378228 + L2 LINE L2 3200 3311 -2 294 346 20 0 chrX 122221715 122221816 -40378114 + MIR3 SINE MIR 92 194 -14 375 286 141 26 chrX 122222408 122222600 -40377330 + MIR SINE MIR 37 250 -12 212 271 0 17 chrX 122222612 122222671 -40377259 + CT-rich Low_complexity Low_complexity 2 59 0 512 125 34 0 chrX 122224215 122224303 -40375627 + L1MA3 LINE L1 6215 6305 0 847 165 0 0 chrX 122224443 122224576 -40375354 + FLAM_A SINE Alu 1 133 0 379 317 122 22 chrX 122224728 122224908 -40375022 - L3 LINE CR1 -135 1442 1245 426 323 8 0 chrX 122224951 122225078 -40374852 - L2 LINE L2 0 3313 3186 503 274 59 0 chrX 122225083 122225218 -40374712 - L3 LINE CR1 -351 1226 1084 660 264 67 10 chrX 122225253 122225446 -40374484 + MIR SINE MIR 44 247 -15 299 326 0 0 chrX 122225480 122225572 -40374358 - L3 LINE CR1 -586 991 900 430 300 0 25 chrX 122226662 122226782 -40373148 + MER115 DNA AcHobo 6 122 -571 1443 270 6 3 chrX 122226894 122227250 -40372680 + MER115 DNA AcHobo 336 692 -1 616 303 37 0 chrX 122227279 122227461 -40372469 - MIR SINE MIR -39 223 38 685 220 16 106 chrX 122227477 122227663 -40372267 + MIR SINE MIR 31 189 -73 2249 105 3 0 chrX 122227663 122227957 -40371973 + AluSx SINE Alu 1 295 -17 685 220 16 106 chrX 122227957 122228025 -40371905 + MIR SINE MIR 189 262 0 1077 243 136 56 chrX 122228098 122228600 -40371330 - MLT1F LTR MaLR 0 542 1 388 279 0 12 chrX 122229018 122229104 -40370826 - MER5B DNA MER1_type 0 178 94 422 296 166 0 chrX 122229223 122229392 -40370538 - MIR SINE MIR 0 262 66 893 264 43 9 chrX 122229426 122229657 -40370273 - MIR SINE MIR -22 240 2 180 270 0 111 chrX 122229672 122229735 -40370195 - MIR SINE MIR -205 57 2 200 357 51 0 chrX 122229750 122229848 -40370082 - MIR SINE MIR -6 256 154 286 300 82 18 chrX 122229929 122230039 -40369891 + MIR SINE MIR 48 164 -98 1017 277 74 34 chrX 122231442 122231890 -40368040 + MLT1J LTR MaLR 3 468 -43 393 307 245 14 chrX 122232584 122232796 -40367134 - L3 LINE CR1 -15 1562 1302 613 247 50 33 chrX 122232823 122233005 -40366925 + MIR SINE MIR 1 185 -77 377 272 117 33 chrX 122233080 122233260 -40366670 - L3 LINE CR1 -280 1297 1103 490 281 34 13 chrX 122233274 122233463 -40366467 - MER20B DNA MER1_type -21 198 4 970 306 147 31 chrX 122233552 122234124 -40365806 - L3 LINE CR1 -565 1012 375 504 0 0 0 chrX 122234419 122234475 -40365455 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 228 111 0 0 chrX 122235338 122235374 -40364556 + (T)n Simple_repeat Simple_repeat 1 36 0 217 260 68 27 chrX 122235590 122235663 -40364267 - MIR3 SINE MIR -129 79 4 305 331 15 23 chrX 122236181 122236311 -40363619 - MER5A DNA MER1_type -23 166 38 * 412 373 0 0 chrX 122236202 122236336 -40363594 + MER5A DNA MER1_type 55 188 -1 334 276 26 44 chrX 122238479 122238672 -40361258 - MIR SINE MIR -42 220 34 190 291 91 0 chrX 122238666 122238721 -40361209 + L2 LINE L2 3247 3306 -7 * 1717 196 5 3 chrX 122238850 122239223 -40360707 + L1 LINE L1 3499 3872 -2274 3416 122 2 9 chrX 122239223 122239749 -40360181 + L1PB3 LINE L1 5625 6151 -3 23 0 0 0 chrX 122239749 122239772 -40360158 + AT_rich Low_complexity Low_complexity 1 23 0 2146 120 0 10 chrX 122240464 122240772 -40359158 - AluSx SINE Alu -7 305 1 553 279 7 39 chrX 122240921 122240950 -40358980 + MER5B DNA MER1_type 30 58 -120 1880 123 52 73 chrX 122240950 122241333 -40358597 + THE1C LTR MaLR 1 375 0 553 279 7 39 chrX 122241333 122241457 -40358473 + MER5B DNA MER1_type 58 178 0 2167 158 16 91 chrX 122241512 122242006 -40357924 + LTR32 LTR ERVL 15 471 0 804 233 50 0 chrX 122243068 122243248 -40356682 - MER5A DNA MER1_type 0 189 1 428 285 87 52 chrX 122243256 122243428 -40356502 - MER5B DNA MER1_type 0 178 1 184 396 0 0 chrX 122243472 122243563 -40356367 + L2 LINE L2 2725 2815 -499 1830 155 20 26 chrX 122243568 122243909 -40356021 - MER44D DNA MER2_type 0 609 1 690 103 0 17 chrX 122243939 122244056 -40355874 + L1MB3 LINE L1 6069 6183 0 216 342 171 13 chrX 122244093 122244251 -40355679 + L2 LINE L2 2880 3062 -210 2333 84 0 3 chrX 122245071 122245369 -40354561 - AluSg SINE Alu -13 297 1 2176 129 0 0 chrX 122246478 122246781 -40353149 + AluSx SINE Alu 1 303 -9 487 308 84 10 chrX 122246796 122247012 -40352918 - MIR SINE MIR -12 250 20 634 62 0 0 chrX 122247205 122247285 -40352645 - MADE1 DNA Mariner 0 80 1 242 366 27 45 chrX 122248173 122248285 -40351645 - L3 LINE CR1 -14 1563 1454 664 274 83 27 chrX 122248318 122248784 -40351146 - LTR33 LTR ERVL 0 521 4 244 382 91 10 chrX 122248785 122248984 -40350946 + L3 LINE CR1 1021 1235 -342 549 249 279 5 chrX 122248985 122249186 -40350744 + MIR SINE MIR 2 257 -5 460 333 139 17 chrX 122249183 122249471 -40350459 + L3 LINE CR1 1252 1574 -3 * 2322 92 0 0 chrX 122249615 122249908 -40350022 + AluSc SINE Alu 1 293 -16 600 345 66 4 chrX 122250030 122250256 -40349674 + MIR SINE MIR 15 254 -8 533 231 56 0 chrX 122251074 122251182 -40348748 - MER81 DNA DNA 0 114 1 21 36 0 0 chrX 122251445 122251473 -40348457 + AT_rich Low_complexity Low_complexity 1 28 0 440 262 131 8 chrX 122251488 122251610 -40348320 - MIR SINE MIR -111 151 15 436 244 8 59 chrX 122251625 122251744 -40348186 - L2 LINE L2 -20 3252 3140 198 0 0 0 chrX 122252119 122252141 -40347789 + (T)n Simple_repeat Simple_repeat 1 22 0 545 148 79 0 chrX 122252321 122252422 -40347508 + L1MC1 LINE L1 6224 6332 -1 1852 177 19 6 chrX 122252467 122252789 -40347141 + MER58B DNA MER1_type 1 326 -15 26 50 0 0 chrX 122253116 122253156 -40346774 + AT_rich Low_complexity Low_complexity 1 40 0 827 261 73 8 chrX 122253821 122254055 -40345875 + MIR SINE MIR 8 256 -6 647 278 44 0 chrX 122254267 122254447 -40345483 - MIR SINE MIR -74 188 1 317 271 35 12 chrX 122254489 122254574 -40345356 - MER91C DNA MER1_type 0 140 54 242 346 10 10 chrX 122254587 122254688 -40345242 + MIR3 SINE MIR 83 183 -25 240 426 26 0 chrX 122255671 122255861 -40344069 + L2 LINE L2 2855 3049 -223 377 332 135 31 chrX 122256208 122256630 -40343300 - L2 LINE L2 -1 3271 2806 240 350 41 82 chrX 122256617 122256837 -40343093 - L2 LINE L2 -47 3225 3015 * 241 330 123 19 chrX 122257394 122257500 -40342430 - L2 LINE L2 -2 3270 3154 432 386 31 23 chrX 122258199 122258488 -40341442 + L2 LINE L2 2752 3047 -225 2824 65 92 5 chrX 122258547 122258959 -40340971 - LTR7 LTR ERV1 -2 448 1 3901 67 17 9 chrX 122258959 122259497 -40340433 - HERVH LTR ERV1 0 7713 7172 3625 96 0 0 chrX 122259489 122259988 -40339942 - HERVH LTR ERV1 -4075 3638 3140 * 17979 104 41 25 chrX 122259967 122262916 -40337014 - HERVH LTR ERV1 -4718 2995 1 2200 75 246 6 chrX 122262919 122263280 -40336650 - LTR7 LTR ERV1 -2 448 1 466 279 85 8 chrX 122263879 122264008 -40335922 + L2 LINE L2 3166 3304 -9 882 286 37 5 chrX 122264234 122264451 -40335479 - MIR SINE MIR -37 225 2 30 27 0 0 chrX 122264998 122265035 -40334895 + AT_rich Low_complexity Low_complexity 1 37 0 640 272 84 4 chrX 122265103 122265342 -40334588 - MER20B DNA MER1_type -140 643 386 6631 75 7 1 chrX 122265365 122266570 -40333360 + L1PA13 LINE L1 4951 6160 -3 227 283 113 38 chrX 122266571 122266677 -40333253 - MER20B DNA MER1_type -555 228 115 2270 251 50 35 chrX 122266707 122267004 -40332926 + L1M4 LINE L1 2350 2641 -3505 706 222 18 84 chrX 122267004 122267229 -40332701 - MER63A DNA MER1_type 0 210 1 2270 251 50 35 chrX 122267229 122268018 -40331912 + L1M4 LINE L1 2641 3452 -2694 2356 129 11 11 chrX 122268182 122268555 -40331375 + THE1C LTR MaLR 1 373 -2 439 293 86 31 chrX 122268661 122268985 -40330945 - L1ME LINE L1 -454 5667 5326 28 48 0 0 chrX 122269869 122269911 -40330019 + AT_rich Low_complexity Low_complexity 1 42 0 244 261 124 63 chrX 122270220 122270568 -40329362 - L1ME LINE L1 -1584 4562 4194 5166 107 29 8 chrX 122270893 122271657 -40328273 + LTR17 LTR ERV1 1 780 0 4375 172 32 30 chrX 122271719 122273228 -40326702 - L1MB1 LINE L1 0 6168 4659 1827 95 40 4 chrX 122273228 122273480 -40326450 - AluSg SINE Alu -49 261 1 4375 172 32 30 chrX 122273480 122273703 -40326227 - L1MB1 LINE L1 -1509 4659 4438 385 211 25 124 chrX 122273736 122273818 -40326112 + L1MA2 LINE L1 2784 2844 -3302 2166 131 0 0 chrX 122273818 122274115 -40325815 + AluSx SINE Alu 1 297 -15 385 211 25 124 chrX 122274115 122274193 -40325737 + L1MA2 LINE L1 2844 2928 -3218 * 5151 175 41 10 chrX 122274188 122275365 -40324565 + L1PA13 LINE L1 4279 5475 -688 13021 184 17 17 chrX 122275373 122276409 -40323521 - L1PB1 LINE L1 -2 6149 5114 8011 25 0 0 chrX 122276409 122278118 -40321812 - L1PA3 LINE L1 -3 6152 4443 13021 184 17 17 chrX 122278118 122280272 -40319658 - L1PB1 LINE L1 -1037 5114 2959 2005 187 60 34 chrX 122280272 122280770 -40319160 + MER9 LTR ERVK 1 511 0 13021 184 17 17 chrX 122280770 122281533 -40318397 - L1PB1 LINE L1 -3192 2959 2197 4248 144 10 0 chrX 122281533 122282224 -40317706 + L1PA13 LINE L1 5460 6159 -4 7974 159 49 12 chrX 122282228 122284743 -40315187 + L1MA2 LINE L1 3692 6300 -4 24 0 0 0 chrX 122284743 122284767 -40315163 + AT_rich Low_complexity Low_complexity 1 24 0 2401 266 50 45 chrX 122284795 122285912 -40314018 - L1 LINE L1 -3360 3746 2636 2028 96 57 0 chrX 122285912 122286193 -40313737 - AluSg SINE Alu -13 297 1 2401 266 50 45 chrX 122286193 122287089 -40312841 - L1 LINE L1 -4470 2636 1962 1633 168 6 72 chrX 122287089 122287288 -40312642 - AluJb SINE Alu 0 312 142 2107 111 0 0 chrX 122287288 122287567 -40312363 - AluSx SINE Alu -23 289 11 1633 168 6 72 chrX 122287567 122287701 -40312229 - AluJb SINE Alu -170 142 1 2401 266 50 45 chrX 122287701 122288588 -40311342 - L1 LINE L1 -5144 1962 1081 1018 237 4 36 chrX 122288598 122288877 -40311053 - L1 LINE L1 -6754 276 7 430 339 18 14 chrX 122289593 122289870 -40310060 - L1MC4a LINE L1 -1885 5923 5646 1826 188 9 13 chrX 122290056 122290429 -40309501 - MER47B DNA MER2_type 0 418 1 353 264 122 16 chrX 122290429 122290738 -40309192 - L1M2 LINE L1 -740 5444 5104 208 272 0 76 chrX 122291425 122291462 -40308468 - MIR SINE MIR -82 180 142 1974 156 38 27 chrX 122291462 122291833 -40308097 - THE1C LTR MaLR 0 375 1 208 272 0 76 chrX 122291833 122291887 -40308043 - MIR SINE MIR -120 142 96 231 154 0 0 chrX 122291942 122291981 -40307949 - MLT2C1 LTR ERVL -7 390 352 392 194 97 0 chrX 122291983 122292076 -40307854 - MLT2C2 LTR ERVL -362 102 1 401 217 0 12 chrX 122293457 122293540 -40306390 - L2 LINE L2 0 3313 3232 585 222 98 36 chrX 122293876 122294070 -40305860 + MIR SINE MIR 57 262 0 369 0 0 0 chrX 122294255 122294296 -40305634 + (TG)n Simple_repeat Simple_repeat 2 42 0 244 305 0 0 chrX 122294618 122294677 -40305253 + MIR SINE MIR 38 96 -112 325 336 207 9 chrX 122294747 122294979 -40304951 + L3 LINE CR1 1291 1568 -9 317 300 20 10 chrX 122294983 122295083 -40304847 + MIR3 SINE MIR 99 199 -9 428 175 0 12 chrX 122295657 122295737 -40304193 - MER45B DNA AcHobo -5 1035 957 1833 157 28 0 chrX 122295737 122296055 -40303875 + L1MA1 LINE L1 4008 4334 -1812 7172 46 5 0 chrX 122296414 122297560 -40302370 - L1PA6 LINE L1 -5 6149 5000 6514 145 10 21 chrX 122297568 122298289 -40301641 + L1MA1 LINE L1 4326 5053 -1249 539 40 14 0 chrX 122298289 122298363 -40301567 + (TAAAA)n Simple_repeat Simple_repeat 1 75 0 6514 145 10 21 chrX 122298363 122298486 -40301444 + L1MA1 LINE L1 5053 5176 -1126 2072 136 10 3 chrX 122298486 122298794 -40301136 + AluSq SINE Alu 1 310 -3 6514 145 10 21 chrX 122298794 122299945 -40299985 + L1MA1 LINE L1 5176 6299 -3 2625 158 60 42 chrX 122299945 122300545 -40299385 - MER45B DNA AcHobo -31 1009 399 740 194 116 3 chrX 122300576 122300801 -40299129 - L1ME3A LINE L1 -223 5947 5692 2035 140 26 34 chrX 122301188 122301566 -40298364 + THE1C LTR MaLR 1 375 0 10164 119 16 28 chrX 122301566 122303166 -40296764 + THE1C-int LTR MaLR 1 1580 0 2171 156 8 16 chrX 122303166 122303544 -40296386 + THE1C LTR MaLR 1 375 0 2045 93 34 0 chrX 122304188 122304457 -40295473 + AluSx SINE Alu 35 312 0 307 325 35 61 chrX 122305176 122305404 -40294526 + MLT1I LTR MaLR 80 301 -108 348 269 31 39 chrX 122305411 122305541 -40294389 + MLT1H LTR MaLR 405 533 -16 187 400 12 0 chrX 122305574 122305659 -40294271 + L2 LINE L2 3186 3271 -1 216 262 0 0 chrX 122307279 122307321 -40292609 + polypyrimidine Low_complexity Low_complexity 4 45 0 229 334 84 0 chrX 122307633 122307747 -40292183 - MIR SINE MIR -68 140 42 1337 172 87 54 chrX 122309151 122309483 -40290447 - MER2 DNA MER2_type 0 344 2 2287 98 0 0 chrX 122310084 122310380 -40289550 + AluY SINE Alu 1 296 -15 2145 125 7 0 chrX 122311456 122311745 -40288185 - AluSx SINE Alu -21 291 1 1360 167 20 140 chrX 122311969 122312311 -40287619 - AluJb SINE Alu -1 301 1 1127 201 35 8 chrX 122312485 122312739 -40287191 + MIR SINE MIR 2 262 0 712 204 44 89 chrX 122312756 122312981 -40286949 + L2 LINE L2 3099 3313 0 211 349 0 0 chrX 122312972 122313038 -40286892 + L2 LINE L2 1834 1899 -1415 * 641 367 34 23 chrX 122313052 122313406 -40286524 + L2 LINE L2 2463 2820 -494 2413 158 47 28 chrX 122313451 122313957 -40285973 + L1MB7 LINE L1 5612 6127 -57 1744 165 0 45 chrX 122313975 122314284 -40285646 - AluSx SINE Alu -17 295 1 330 368 8 0 chrX 122314345 122314470 -40285460 + L2 LINE L2 2812 2937 -376 1437 123 26 56 chrX 122314527 122314796 -40285134 - LTR8 LTR ERV1 0 691 431 234 0 0 0 chrX 122314796 122314822 -40285108 + (T)n Simple_repeat Simple_repeat 1 26 0 1320 82 10 51 chrX 122314830 122315025 -40284905 - AluY SINE Alu -124 187 1 1921 153 20 98 chrX 122315050 122315509 -40284421 - LTR8 LTR ERV1 -268 423 1 1435 230 48 26 chrX 122315509 122315853 -40284077 + MLT1A1 LTR MaLR 14 365 0 6937 214 56 62 chrX 122315853 122317591 -40282339 + MLT1A1-int LTR MaLR 1 1728 -7 1452 238 14 14 chrX 122317597 122317962 -40281968 + MLT1A1 LTR MaLR 1 365 0 190 390 28 79 chrX 122318030 122318207 -40281723 + L2 LINE L2 3030 3197 -75 333 327 6 26 chrX 122318248 122318404 -40281526 - L2 LINE L2 -12 3301 3149 318 232 95 60 chrX 122318407 122318575 -40281355 + MER104 DNA Tc2 4 177 -3 180 367 67 46 chrX 122318723 122319094 -40280836 + L2 LINE L2 2368 2746 -568 453 261 43 17 chrX 122319159 122319274 -40280656 + L2 LINE L2 3155 3272 0 231 234 121 24 chrX 122320138 122320262 -40279668 - L1ME4a LINE L1 0 6121 5986 233 287 96 0 chrX 122320280 122320395 -40279535 - L1ME4a LINE L1 -189 5932 5807 1736 127 191 72 chrX 122320395 122320756 -40279174 - MER4A LTR ERV1 0 664 261 485 105 116 0 chrX 122320758 122320844 -40279086 - MER4A LTR ERV1 -568 96 1 238 262 24 24 chrX 122320844 122320928 -40279002 - L1ME4a LINE L1 -2000 5808 5725 797 285 60 65 chrX 122320991 122321360 -40278570 - MLT1I LTR MaLR -2 407 41 3757 167 31 45 chrX 122321771 122322567 -40277363 + LTR1 LTR ERV1 1 785 0 11531 193 30 76 chrX 122323964 122328031 -40271899 - L1MA4A LINE L1 -5 7000 3453 1658 125 62 88 chrX 122328031 122328415 -40271515 + THE1C LTR MaLR 1 374 -1 11531 193 30 76 chrX 122328415 122331714 -40268216 - L1MA4A LINE L1 -3552 3453 2 417 20 0 0 chrX 122332432 122332482 -40267448 + (TG)n Simple_repeat Simple_repeat 2 51 0 289 130 0 0 chrX 122334131 122334177 -40265753 + Tigger2a DNA MER2_type 1 46 -388 2620 238 48 25 chrX 122334177 122334926 -40265004 + L1P3 LINE L1 974 1721 -4740 231 51 128 0 chrX 122334928 122334967 -40264963 + L1PA11 LINE L1 6130 6173 -1 2292 155 18 40 chrX 122335013 122335227 -40264703 + Tigger2a DNA MER2_type 1 201 -2507 2399 68 0 26 chrX 122335227 122335537 -40264393 - AluY SINE Alu 0 311 10 2292 155 18 40 chrX 122335537 122335766 -40264164 + Tigger2a DNA MER2_type 201 434 0 237 222 0 0 chrX 122336384 122336438 -40263492 - MIR3 SINE MIR -3 205 152 2260 110 7 0 chrX 122336999 122337309 -40262621 + AluSx SINE Alu 1 312 0 232 364 24 29 chrX 122337416 122337625 -40262305 + L2 LINE L2 2876 3083 -189 1795 77 56 70 chrX 122337644 122337973 -40261957 + AluSc SINE Alu 1 325 0 516 244 68 66 chrX 122339104 122339707 -40260223 + L1MC5 LINE L1 7169 7590 -371 742 280 131 19 chrX 122340014 122340454 -40259476 - L2 LINE L2 0 3313 2782 620 293 65 70 chrX 122340554 122340895 -40259035 - MLT1I LTR MaLR -19 390 52 3618 164 42 45 chrX 122341310 122342097 -40257833 + LTR1 LTR ERV1 1 785 0 8328 177 39 4 chrX 122343476 122346204 -40253726 - L1MA4A LINE L1 -5 7000 4191 4651 220 34 17 chrX 122346562 122347514 -40252416 - L1MA4A LINE L1 -2639 4209 3224 1613 120 68 89 chrX 122347514 122347896 -40252034 + THE1C LTR MaLR 1 374 -1 4651 220 34 17 chrX 122347896 122348349 -40251581 - L1MA4A LINE L1 -3624 3224 2780 7483 107 17 14 chrX 122348449 122349630 -40250300 + HERVH LTR ERV1 1811 2995 -4718 3334 97 6 0 chrX 122349609 122350105 -40249825 + HERVH LTR ERV1 3140 3638 -4075 * 3503 68 28 9 chrX 122350097 122350629 -40249301 + HERVH LTR ERV1 7172 7713 0 2678 71 103 5 chrX 122350629 122351037 -40248893 + LTR7 LTR ERV1 1 448 -2 4334 121 55 38 chrX 122351040 122352448 -40247482 + HERVH LTR ERV1 1 1488 -6225 264 265 34 77 chrX 122352612 122352729 -40247201 + MIR SINE MIR 43 154 -108 497 253 188 0 chrX 122353710 122353880 -40246050 + L2 LINE L2 2586 2787 -527 13557 87 11 4 chrX 122353981 122356544 -40243386 - HERVL LTR ERVL -763 4891 2281 4602 60 2 2 chrX 122356699 122357282 -40242648 + L1PA7 LINE L1 5561 6143 -11 281 265 26 0 chrX 122357282 122357399 -40242531 + (TA)n Simple_repeat Simple_repeat 2 121 0 251 234 94 41 chrX 122357680 122357851 -40242079 + L1ME4a LINE L1 5924 6103 -18 189 181 96 84 chrX 122358072 122358155 -40241775 - MIR3 SINE MIR -43 165 82 2099 110 3 0 chrX 122358316 122358620 -40241310 + AluSx SINE Alu 1 305 0 1924 54 0 0 chrX 122358723 122358984 -40240946 + HERVL-A1 LTR ERVL 5392 5652 -2 2878 106 37 14 chrX 122358986 122359420 -40240510 + MLT2A1 LTR ERVL 1 444 0 2456 190 31 2 chrX 122359420 122360057 -40239873 - L1M3 LINE L1 -378 5790 5135 5042 125 15 4 chrX 122361828 122362748 -40237182 - L1P LINE L1 -970 5176 4247 * 9113 125 19 22 chrX 122362747 122364268 -40235662 - L1P3 LINE L1 -4944 1517 1 538 280 50 35 chrX 122364268 122364550 -40235380 - L1ME LINE L1 -355 5766 5481 1433 200 46 129 chrX 122364865 122365802 -40234128 - Charlie2 DNA MER1_type -89 2773 1915 330 296 37 15 chrX 122365948 122366083 -40233847 - Charlie2 DNA MER1_type -2706 156 19 221 255 151 47 chrX 122366140 122366246 -40233684 + L2 LINE L2 3179 3295 -18 1981 161 3 16 chrX 122366246 122366613 -40233317 + MER47A DNA MER2_type 1 362 -4 234 267 50 0 chrX 122368014 122368115 -40231815 + L1MB4 LINE L1 5793 5898 -223 203 125 25 0 chrX 122368134 122368174 -40231756 + (TA)n Simple_repeat Simple_repeat 2 42 0 1725 123 4 11 chrX 122368340 122368609 -40231321 + THE1C LTR MaLR 109 375 0 2580 115 102 2 chrX 122368611 122369063 -40230867 + THE1C-int LTR MaLR 3 499 -1081 21 0 0 0 chrX 122369221 122369242 -40230688 + GC_rich Low_complexity Low_complexity 1 21 0 442 187 53 0 chrX 122369505 122369676 -40230254 + (TA)n Simple_repeat Simple_repeat 1 180 0 386 169 16 54 chrX 122369636 122369820 -40230110 + (TTATA)n Simple_repeat Simple_repeat 4 180 0 * 57 47 0 0 chrX 122369823 122369908 -40230022 + AT_rich Low_complexity Low_complexity 1 85 0 294 140 56 7 chrX 122369908 122370051 -40229879 + (TA)n Simple_repeat Simple_repeat 1 150 0 1566 242 20 29 chrX 122370247 122370969 -40228961 + L1MC3 LINE L1 5152 5717 -449 856 244 5 5 chrX 122370974 122371191 -40228739 - Tigger1 DNA MER2_type 0 2418 2202 612 210 94 0 chrX 122371187 122371325 -40228605 - Tigger1 DNA MER2_type -2267 151 1 * 324 261 18 0 chrX 122371325 122371436 -40228494 + L1ME1 LINE L1 5831 5943 -223 1794 167 125 20 chrX 122371439 122371739 -40228191 + Tigger2 DNA MER2_type 1 268 -2450 1709 168 145 18 chrX 122371739 122372119 -40227811 - MSTA LTR MaLR 0 428 1 1794 167 125 20 chrX 122372119 122372272 -40227658 + Tigger2 DNA MER2_type 268 2718 0 378 202 31 114 chrX 122372277 122372470 -40227460 + L1ME1 LINE L1 5946 6122 -44 1714 229 52 44 chrX 122372610 122373383 -40226547 - L1MEc LINE L1 -4080 2316 1538 675 198 12 12 chrX 122373391 122373558 -40226372 + L1MB4 LINE L1 6011 6177 -3 276 153 68 0 chrX 122373561 122373620 -40226310 + L1M LINE L1 5323 5385 -795 302 289 59 30 chrX 122373620 122373755 -40226175 - L1MC5 LINE L1 -104 7857 7719 272 272 70 44 chrX 122375003 122375117 -40224813 + L2 LINE L2 3141 3257 -15 691 286 61 72 chrX 122376458 122377861 -40222069 - L1MEd LINE L1 -4638 1672 253 472 131 2 14 chrX 122378559 122378649 -40221281 + MSTA LTR MaLR 1 90 -336 3156 99 141 140 chrX 122378649 122379834 -40220096 - pTR5 LTR ERV1 -7 2431 1082 384 221 122 70 chrX 122379950 122380163 -40219767 + MLT1C LTR MaLR 1 224 -243 637 276 78 76 chrX 122380313 122380850 -40219080 - MLT1F LTR MaLR -4 538 1 381 117 0 0 chrX 122381070 122381130 -40218800 + (TG)n Simple_repeat Simple_repeat 2 61 0 6672 130 17 3 chrX 122381181 122383075 -40216855 - L1PA3 LINE L1 -3 6152 4244 607 186 77 13 chrX 122383081 122383237 -40216693 - L1MB8 LINE L1 -1 6177 6012 25 0 0 0 chrX 122384167 122384192 -40215738 + AT_rich Low_complexity Low_complexity 1 25 0 379 335 60 0 chrX 122385045 122385212 -40214718 - MIR SINE MIR -1 261 85 32 57 0 0 chrX 122385214 122385267 -40214663 + AT_rich Low_complexity Low_complexity 1 53 0 274 250 16 0 chrX 122385724 122385788 -40214142 - MER96 DNA MER1_type? 0 175 111 22 56 0 0 chrX 122387154 122387190 -40212740 + AT_rich Low_complexity Low_complexity 1 36 0 346 280 40 10 chrX 122387479 122387579 -40212351 - MIR3 SINE MIR -6 202 100 3352 185 40 23 chrX 122387974 122388796 -40211134 - L1MC2 LINE L1 -48 6296 5461 2132 161 13 2 chrX 122388796 122389194 -40210736 - MER6 DNA MER2_type -1 864 463 4333 96 5 7 chrX 122389545 122390417 -40209513 - HERV17 LTR ERV1 0 8399 504 272 213 0 0 chrX 122390413 122390474 -40209456 - HERV17 LTR ERV1 -835 7564 7504 * 397 57 0 0 chrX 122390475 122390528 -40209402 - HERV17 LTR ERV1 -7728 898 846 763 258 174 30 chrX 122390592 122390926 -40209004 - L2 LINE L2 0 3313 2932 5244 141 8 20 chrX 122391648 122392648 -40207282 - L1PA16 LINE L1 0 6166 5192 1421 275 45 16 chrX 122392654 122393167 -40206763 + LTR38 LTR ERV1 3 530 -26 815 216 29 20 chrX 122393169 122393414 -40206516 - L1PA16 LINE L1 -958 5188 4942 3976 202 15 10 chrX 122393416 122394373 -40205557 + L1PA16 LINE L1 4015 4975 -1171 254 330 31 10 chrX 122394701 122394798 -40205132 + MIR SINE MIR 2 100 -162 236 203 40 27 chrX 122394802 122394876 -40205054 - MLT1L LTR MaLR -4 611 537 1999 197 35 4 chrX 122394900 122395361 -40204569 - L1MA9 LINE L1 -35 6277 5803 28153 39 38 2 chrX 122395361 122399054 -40200876 + L1P LINE L1 2 3828 -2318 738 247 10 6 chrX 122399052 122399284 -40200646 + L1 LINE L1 3344 3574 -2572 * 326 324 29 7 chrX 122399558 122399697 -40200233 - MLT1K LTR MaLR -315 273 132 2060 131 0 0 chrX 122400084 122400366 -40199564 + AluSx SINE Alu 1 302 0 181 0 0 0 chrX 122400366 122400386 -40199544 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1994 144 123 8 chrX 122401278 122401661 -40198269 - MSTB1 LTR MaLR -2 430 4 447 323 48 16 chrX 122401782 122401971 -40197959 + L2 LINE L2 3115 3309 -4 672 210 7 0 chrX 122402436 122402574 -40197356 + Charlie1 DNA MER1_type 2623 2761 0 339 365 31 81 chrX 122402593 122403050 -40196880 + L2 LINE L2 2831 3264 -8 262 188 129 99 chrX 122403064 122403165 -40196765 - MIR SINE MIR -4 258 155 204 191 258 22 chrX 122403139 122403228 -40196702 + MIR SINE MIR 153 262 0 * 489 267 53 13 chrX 122403236 122403386 -40196544 - MIR SINE MIR -105 157 2 302 341 37 15 chrX 122404269 122404404 -40195526 - MIR3 SINE MIR -53 155 18 4510 293 69 20 chrX 122404521 122406313 -40193617 + L2 LINE L2 1440 3313 0 2280 68 10 3 chrX 122406397 122406692 -40193238 - AluY SINE Alu -14 297 1 1832 197 16 3 chrX 122406721 122407092 -40192838 - L1MB1 LINE L1 -7 6161 5786 3162 88 11 7 chrX 122407092 122407534 -40192396 + MLT2A1 LTR ERVL 1 444 0 8240 80 2 6 chrX 122407534 122409653 -40190277 + HERVL-A1 LTR ERVL 1 2216 -3438 378 223 11 53 chrX 122410197 122410291 -40189639 - L1MC4 LINE L1 -1339 6703 6614 345 289 0 0 chrX 122410213 122410303 -40189627 + L1MC4 LINE L1 6614 6703 -1339 * 242 89 0 114 chrX 122410326 122410449 -40189481 + (TA)n Simple_repeat Simple_repeat 2 110 0 213 365 0 0 chrX 122410703 122410766 -40189164 + L2 LINE L2 3210 3272 0 1596 153 109 0 chrX 122411198 122411518 -40188412 + MER46B DNA MER2_type 6 235 -1 2789 139 91 7 chrX 122411855 122412395 -40187535 - L1MA3 LINE L1 0 6305 5721 1873 140 7 7 chrX 122412403 122412756 -40187174 - L1MA3 LINE L1 -537 5631 5278 795 143 122 0 chrX 122412729 122412876 -40187054 - L1MA3 LINE L1 0 6305 6141 * 2235 111 22 35 chrX 122412876 122413245 -40186685 + THE1B LTR MaLR 1 364 0 1433 82 10 10 chrX 122413245 122413451 -40186479 + THE1B-int LTR MaLR 1 206 -1374 * 13279 190 28 21 chrX 122413436 122415485 -40184445 - L1MA3 LINE L1 -432 7291 5258 2223 128 0 0 chrX 122415485 122415791 -40184139 + AluSx SINE Alu 1 306 -6 13279 190 28 21 chrX 122415791 122418139 -40181791 - L1MA3 LINE L1 -2465 5258 2696 1430 123 92 15 chrX 122418151 122418411 -40181519 + MLT2A1 LTR ERVL 165 444 0 1194 173 0 57 chrX 122420385 122420479 -40179451 - MER46A DNA MER2_type -2495 236 138 1346 213 92 3 chrX 122420479 122420794 -40179136 + MER7A DNA MER2_type 2 342 -4 1194 173 0 57 chrX 122420794 122420947 -40178983 - MER46A DNA MER2_type -2593 138 3 1854 222 54 5 chrX 122421081 122421487 -40178443 - MSTB LTR MaLR 0 426 1 347 335 47 38 chrX 122421687 122421713 -40178217 - LTR33 LTR ERVL -4 517 493 1940 146 50 19 chrX 122421713 122422077 -40177853 - THE1C LTR MaLR 0 375 1 347 335 47 38 chrX 122422077 122422262 -40177668 - LTR33 LTR ERVL -28 493 304 438 265 45 0 chrX 122422534 122422666 -40177264 - MIR SINE MIR -49 213 76 307 287 50 10 chrX 122422750 122422851 -40177079 - MIR SINE MIR -74 188 84 1730 109 11 8 chrX 122422976 122423241 -40176689 + MER11A LTR ERVK 1001 1266 0 460 242 0 0 chrX 122423242 122423341 -40176589 + MER58B DNA MER1_type 243 341 0 1691 200 19 32 chrX 122423394 122423764 -40176166 - MLT1A1 LTR MaLR 0 365 1 261 0 0 0 chrX 122423861 122423890 -40176040 + (T)n Simple_repeat Simple_repeat 1 29 0 1816 191 0 6 chrX 122424151 122424465 -40175465 - AluJo SINE Alu 0 312 1 233 282 84 0 chrX 122424670 122424741 -40175189 - MIR SINE MIR -65 197 121 492 296 31 12 chrX 122425514 122425676 -40174254 + MIR SINE MIR 4 168 -94 185 254 127 0 chrX 122425753 122425808 -40174122 + MIR SINE MIR 191 252 -10 1170 174 82 5 chrX 122426210 122426429 -40173501 + MER46A DNA MER2_type 1 236 0 420 365 68 17 chrX 122427462 122427664 -40172266 - MER102b DNA MER1_type -1119 309 86 195 42 0 0 chrX 122427664 122427688 -40172242 + (TTG)n Simple_repeat Simple_repeat 2 25 0 420 365 68 17 chrX 122427688 122427778 -40172152 - MER102b DNA MER1_type -1342 86 2 26 30 0 0 chrX 122427844 122427877 -40172053 + AT_rich Low_complexity Low_complexity 1 33 0 520 239 21 112 chrX 122429277 122429406 -40170524 + MIR SINE MIR 17 125 -137 1449 175 4 0 chrX 122429406 122429657 -40170273 - L1PB4 LINE L1 -12 6144 5893 520 239 21 112 chrX 122429657 122429715 -40170215 + MIR SINE MIR 125 187 -75 1889 90 42 14 chrX 122430537 122430826 -40169104 + AluSp SINE Alu 1 297 -16 23 0 0 0 chrX 122430954 122430977 -40168953 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 122431101 122431129 -40168801 + AT_rich Low_complexity Low_complexity 1 28 0 286 313 96 0 chrX 122431577 122431660 -40168270 + L2 LINE L2 3208 3298 -15 492 314 48 34 chrX 122431907 122432114 -40167816 + MIR SINE MIR 47 256 -6 3843 205 48 26 chrX 122432128 122433101 -40166829 - L1MB8 LINE L1 -2 6176 5183 6694 139 21 7 chrX 122433108 122434383 -40165547 - L1MA1 LINE L1 0 6302 5009 7336 233 75 43 chrX 122434384 122434545 -40165385 - L1MB8 LINE L1 -965 5181 5027 2571 117 0 0 chrX 122434545 122434930 -40165000 - L1PA13 LINE L1 -6 6157 5773 7336 233 75 43 chrX 122434930 122436834 -40163096 - L1MB8 LINE L1 -1119 5027 3001 1546 186 4 7 chrX 122436834 122437108 -40162822 - AluJb SINE Alu -39 273 1 7336 233 75 43 chrX 122437108 122437832 -40162098 - L1MB8 LINE L1 -3145 3001 2302 625 292 68 5 chrX 122438023 122438215 -40161715 - MER63A DNA MER1_type -5 205 2 371 299 83 28 chrX 122439079 122439223 -40160707 + MIR SINE MIR 53 204 -58 492 344 108 9 chrX 122439479 122439691 -40160239 - MIR SINE MIR -12 250 18 826 290 75 28 chrX 122440813 122440868 -40159062 - L1M4 LINE L1 -803 5343 5292 198 71 0 0 chrX 122440868 122440896 -40159034 + (TA)n Simple_repeat Simple_repeat 2 29 0 826 290 75 28 chrX 122440896 122441333 -40158597 - L1M4 LINE L1 -854 5292 4828 1957 251 38 11 chrX 122441461 122441935 -40157995 + MLT1E2 LTR MaLR 140 626 0 634 271 94 34 chrX 122441935 122442286 -40157644 - L1M4 LINE L1 -1313 4833 4462 3831 254 81 45 chrX 122442294 122445295 -40154635 - L1ME1 LINE L1 -8 6158 3052 1307 157 18 8 chrX 122445335 122445674 -40154256 - MSTB LTR MaLR -7 421 1 450 266 54 9 chrX 122445674 122445896 -40154034 - L1ME1 LINE L1 -3131 3015 2784 342 138 21 90 chrX 122445957 122446145 -40153785 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 289 200 65 7 chrX 122446112 122446267 -40153663 + (TA)n Simple_repeat Simple_repeat 2 165 0 * 23 54 0 0 chrX 122446273 122446310 -40153620 + AT_rich Low_complexity Low_complexity 1 37 0 9535 37 9 0 chrX 122446418 122448035 -40151895 - L1PA5 LINE L1 -313 5841 4217 1704 57 0 0 chrX 122448035 122448244 -40151686 + L1PA5 LINE L1 3997 4205 -1941 590 211 94 63 chrX 122448294 122448517 -40151413 - MLT1D LTR MaLR -275 230 1 2259 163 13 2 chrX 122450941 122451339 -40148591 + MER6 DNA MER2_type 463 864 -1 3603 185 40 23 chrX 122451339 122452161 -40147769 + L1MC2 LINE L1 5461 6296 -48 344 280 40 10 chrX 122452556 122452656 -40147274 + MIR3 SINE MIR 100 202 -6 46 45 0 0 chrX 122452928 122452995 -40146935 + AT_rich Low_complexity Low_complexity 1 67 0 296 250 16 0 chrX 122454346 122454410 -40145520 + MER96 DNA MER1_type? 111 175 0 32 57 0 0 chrX 122454867 122454920 -40145010 + AT_rich Low_complexity Low_complexity 1 53 0 389 335 60 0 chrX 122454922 122455089 -40144841 + MIR SINE MIR 85 261 -1 25 0 0 0 chrX 122455942 122455967 -40143963 + AT_rich Low_complexity Low_complexity 1 25 0 656 186 77 13 chrX 122456897 122457053 -40142877 + L1MB8 LINE L1 6012 6177 -1 6704 131 24 1 chrX 122457059 122458944 -40140986 + L1PA10 LINE L1 4244 6157 -11 614 274 55 50 chrX 122459004 122459223 -40140707 + MIR SINE MIR 11 230 -32 21 0 0 0 chrX 122459223 122459244 -40140686 + AT_rich Low_complexity Low_complexity 1 21 0 217 265 102 75 chrX 122459360 122459507 -40140423 + MIR SINE MIR 106 256 -6 354 333 46 9 chrX 122459649 122459757 -40140173 - L2 LINE L2 -1 3271 3160 4881 155 30 39 chrX 122460456 122461461 -40138469 + L1PB4 LINE L1 4781 5773 -383 495 0 0 0 chrX 122461461 122461516 -40138414 + (TA)n Simple_repeat Simple_repeat 1 55 0 4881 155 30 39 chrX 122461516 122461884 -40138046 + L1PB4 LINE L1 5773 6143 -13 21 0 0 0 chrX 122461884 122461905 -40138025 + AT_rich Low_complexity Low_complexity 1 21 0 1178 172 120 24 chrX 122461905 122462196 -40137734 + L1MB8 LINE L1 5860 6178 0 35 0 0 0 chrX 122462214 122462249 -40137681 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chrX 122463034 122463057 -40136873 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chrX 122463323 122463370 -40136560 + (TG)n Simple_repeat Simple_repeat 2 48 0 1961 136 94 0 chrX 122464083 122464391 -40135539 + MER1B DNA MER1_type 1 337 0 24 32 0 0 chrX 122464846 122464877 -40135053 + AT_rich Low_complexity Low_complexity 1 31 0 447 221 122 70 chrX 122464912 122465125 -40134805 + MLT1C LTR MaLR 1 224 -243 665 276 78 76 chrX 122465275 122465812 -40134118 - MLT1F LTR MaLR -4 538 1 381 117 0 0 chrX 122466032 122466092 -40133838 + (TG)n Simple_repeat Simple_repeat 2 61 0 44101 38 1 2 chrX 122466143 122472306 -40127624 - L1PA3 LINE L1 -3 6152 1 315 252 39 58 chrX 122472457 122472612 -40127318 + L1M4 LINE L1 3773 3924 -2222 71 0 0 0 chrX 122472629 122472700 -40127230 + AT_rich Low_complexity Low_complexity 1 71 0 251 253 20 20 chrX 122473018 122473117 -40126813 + L1P LINE L1 4906 5004 -1142 1190 312 25 29 chrX 122473331 122473856 -40126074 - ERVL LTR ERVL -1582 4182 3660 1306 332 64 44 chrX 122474059 122475080 -40124850 - ERVL LTR ERVL -2375 3389 2349 443 290 23 0 chrX 122475141 122475270 -40124660 - ERVL LTR ERVL -3266 2238 2087 863 307 68 57 chrX 122475459 122476287 -40123643 - ERVL LTR ERVL -3907 1857 1021 599 269 189 25 chrX 122476752 122477038 -40122892 - MLT1J2 LTR MaLR -117 333 1 1922 188 13 8 chrX 122477473 122477866 -40122064 - L1 LINE L1 -2499 3647 3253 1517 223 17 27 chrX 122477878 122478286 -40121644 - L1M4 LINE L1 -1191 4955 4552 24 0 0 0 chrX 122478465 122478489 -40121441 + AT_rich Low_complexity Low_complexity 1 24 0 223 261 46 0 chrX 122478593 122478658 -40121272 - L2 LINE L2 -2 3311 3244 251 225 14 28 chrX 122479361 122479432 -40120498 + L1PA15-16 LINE L1 1 70 -6779 4119 286 22 41 chrX 122479433 122480984 -40118946 + L1PA15-16 LINE L1 103 1624 -5226 238 337 68 18 chrX 122481178 122481341 -40118589 + MIR SINE MIR 90 260 -2 8707 218 44 28 chrX 122481493 122482137 -40117793 + L1PBb LINE L1 24 657 -5546 204 97 0 0 chrX 122482137 122482168 -40117762 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 8707 218 44 28 chrX 122482168 122485886 -40114044 + L1PBb LINE L1 657 4547 -1656 1162 258 50 24 chrX 122485889 122486265 -40113665 + L1MA1 LINE L1 27 412 -7153 14427 166 32 12 chrX 122486266 122492160 -40107770 + L1MA1 LINE L1 1703 7702 -19 920 304 11 4 chrX 122492392 122492652 -40107278 - MIR SINE MIR 0 262 1 552 268 101 24 chrX 122492659 122492868 -40107062 - MIR SINE MIR -25 237 13 768 312 81 5 chrX 122493127 122493483 -40106447 + LTR16A LTR ERVL 1 448 -2 272 276 0 8 chrX 122493729 122493863 -40106067 + (TA)n Simple_repeat Simple_repeat 2 134 0 196 233 0 0 chrX 122494586 122494629 -40105301 - L2 LINE L2 -78 3235 3193 1720 176 27 118 chrX 122495322 122495873 -40104057 - MLT1D LTR MaLR -2 503 3 649 324 5 5 chrX 122497081 122497285 -40102645 - MIR SINE MIR -5 257 54 445 343 52 13 chrX 122497440 122497673 -40102257 - LTR16C LTR ERVL -154 337 96 215 317 41 32 chrX 122497964 122498087 -40101843 - L2 LINE L2 -1 3312 3189 417 20 0 0 chrX 122498168 122498218 -40101712 + (TG)n Simple_repeat Simple_repeat 1 50 0 194 347 160 27 chrX 122498947 122499172 -40100758 + MIR SINE MIR 1 255 -7 362 337 93 57 chrX 122500116 122500309 -40099621 + MIR3 SINE MIR 2 201 -7 565 296 152 39 chrX 122500995 122501252 -40098678 - MLT1K LTR MaLR -181 407 122 3758 58 2 0 chrX 122502411 122502890 -40097040 + L1PA2 LINE L1 5676 6155 0 288 321 50 13 chrX 122503122 122503281 -40096649 - MIR SINE MIR -10 252 88 953 246 8 29 chrX 122503544 122503784 -40096146 + MIR SINE MIR 9 243 -19 2071 207 95 71 chrX 122503979 122504588 -40095342 + MLT1E2 LTR MaLR 1 624 -2 18359 155 40 11 chrX 122504650 122507763 -40092167 + L1MA3 LINE L1 11 3214 -4351 269 143 0 0 chrX 122507763 122507805 -40092125 - MSTA LTR MaLR 0 428 387 5569 169 17 10 chrX 122507805 122508116 -40091814 + L1MA3 LINE L1 5665 5972 -1593 2443 168 26 2 chrX 122508116 122508532 -40091398 - MSTB LTR MaLR 0 426 1 5569 169 17 10 chrX 122508532 122509343 -40090587 + L1MA3 LINE L1 5972 6795 -770 2573 108 103 0 chrX 122509339 122509745 -40090185 + L1MA3 LINE L1 7015 7462 -262 * 705 98 189 0 chrX 122509750 122509872 -40090058 + L1MA3 LINE L1 7578 7722 -2 511 330 124 43 chrX 122510567 122511234 -40088696 + L1M4 LINE L1 3514 4238 -1908 1275 224 31 45 chrX 122511302 122511700 -40088230 + MLT1B LTR MaLR 1 467 0 301 246 179 23 chrX 122511969 122512339 -40087591 + L1M4 LINE L1 4389 4826 -1320 566 314 61 20 chrX 122512397 122512642 -40087288 + MIR SINE MIR 2 256 -6 196 289 83 33 chrX 122513101 122513222 -40086708 + L3 LINE CR1 584 710 -867 397 231 19 19 chrX 122513751 122513855 -40086075 + MER5A DNA MER1_type 38 141 -48 384 277 62 0 chrX 122514081 122514193 -40085737 - MER91C DNA MER1_type -11 129 11 812 244 54 45 chrX 122515466 122515708 -40084222 - MIR SINE MIR 0 262 19 24 0 0 0 chrX 122516310 122516334 -40083596 + AT_rich Low_complexity Low_complexity 1 24 0 379 287 59 10 chrX 122516979 122517080 -40082850 + MER91C DNA MER1_type 3 108 -32 606 252 32 7 chrX 122519688 122519843 -40080087 - MLT1J LTR MaLR -282 229 71 1495 178 225 3 chrX 122520020 122520362 -40079568 + MER47B DNA MER2_type 1 418 0 266 322 93 25 chrX 122520466 122520584 -40079346 - L2 LINE L2 -4 3268 3143 1229 169 93 90 chrX 122520829 122521172 -40078758 - MER2 DNA MER2_type 0 344 1 343 206 37 75 chrX 122521307 122521414 -40078516 + MIR SINE MIR 110 212 -50 734 329 29 26 chrX 122521555 122521899 -40078031 - L2 LINE L2 -465 2849 2505 1473 106 64 158 chrX 122521995 122522325 -40077605 - AluSg SINE Alu -11 299 1 26 50 0 0 chrX 122522513 122522553 -40077377 + AT_rich Low_complexity Low_complexity 1 40 0 475 314 100 23 chrX 122522573 122522834 -40077096 - L2 LINE L2 -778 2536 2256 1146 309 164 30 chrX 122522836 122523771 -40076159 - L2 LINE L2 -941 2373 1314 570 67 0 0 chrX 122524056 122524131 -40075799 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 2149 109 23 7 chrX 122524131 122524433 -40075497 - AluSx SINE Alu -5 307 1 300 316 86 33 chrX 122525184 122525556 -40074374 - MLT1K LTR MaLR 0 588 151 879 279 20 12 chrX 122525809 122526056 -40073874 - MIR SINE MIR -9 253 5 237 325 73 97 chrX 122526058 122526232 -40073698 + L2 LINE L2 2458 2635 -679 387 0 0 0 chrX 122526232 122526275 -40073655 + (TG)n Simple_repeat Simple_repeat 2 44 0 237 325 73 97 chrX 122526275 122526522 -40073408 + L2 LINE L2 2635 2869 -445 302 206 22 54 chrX 122526583 122526613 -40073317 + MIR3 SINE MIR 71 100 -108 2065 178 8 0 chrX 122526613 122526973 -40072957 + MLT1A1 LTR MaLR 1 363 -2 302 206 22 54 chrX 122526973 122527034 -40072896 + MIR3 SINE MIR 100 159 -49 682 286 74 9 chrX 122527975 122528192 -40071738 + MIR SINE MIR 24 254 -8 2603 124 67 5 chrX 122528740 122529176 -40070754 - LTR1B LTR ERV1 0 826 364 1312 114 5 16 chrX 122529168 122529361 -40070569 - LTR1B LTR ERV1 -635 191 1 * 339 316 137 0 chrX 122529564 122529754 -40070176 + MIR SINE MIR 37 252 -10 424 299 85 20 chrX 122530068 122530259 -40069671 + L1ME4a LINE L1 5783 6001 -120 1073 228 85 43 chrX 122530259 122530588 -40069342 + MER2 DNA MER2_type 2 344 0 424 299 85 20 chrX 122530588 122530690 -40069240 + L1ME4a LINE L1 6001 6095 -26 272 342 154 0 chrX 122532868 122532985 -40066945 - L2 LINE L2 0 3272 3138 331 241 13 0 chrX 122533017 122533096 -40066834 + MER116 DNA Mariner 1 80 0 279 329 14 56 chrX 122533172 122533315 -40066615 - L2 LINE L2 -194 3078 2942 1967 175 33 51 chrX 122533529 122534087 -40065843 - MLT2A2 LTR ERVL 0 554 1 7196 214 13 11 chrX 122534744 122537208 -40062722 - L1PA15 LINE L1 0 6816 4348 4665 258 44 32 chrX 122537215 122540301 -40059629 - L1PA15 LINE L1 -3394 3403 1 302 239 17 77 chrX 122540424 122540541 -40059389 + MIR SINE MIR 104 213 -49 511 271 100 39 chrX 122540645 122540874 -40059056 - MIR SINE MIR 0 262 20 212 318 48 16 chrX 122541382 122541445 -40058485 + L2 LINE L2 2929 2993 -279 253 270 100 75 chrX 122541644 122541729 -40058201 - L1MC/D LINE L1 -1897 5911 5830 2019 138 10 3 chrX 122541729 122542026 -40057904 - AluSx SINE Alu -12 300 2 253 270 100 75 chrX 122542026 122542140 -40057790 - L1MC/D LINE L1 -1978 5830 5707 1506 182 3 46 chrX 122542366 122542668 -40057262 + AluJb SINE Alu 7 295 -17 924 251 32 66 chrX 122543078 122543099 -40056831 - MSTB2 LTR MaLR -2 455 435 1629 166 63 41 chrX 122543099 122543466 -40056464 - THE1C LTR MaLR 0 375 1 924 251 32 66 chrX 122543466 122543856 -40056074 - MSTB2 LTR MaLR -22 435 1 503 175 117 0 chrX 122543967 122544070 -40055860 + MSTB LTR MaLR 1 115 -311 263 158 0 18 chrX 122544679 122544736 -40055194 + GA-rich Low_complexity Low_complexity 4 59 0 209 365 159 0 chrX 122544949 122545075 -40054855 - L2 LINE L2 0 3272 3127 605 250 85 40 chrX 122545203 122545403 -40054527 - MER58C DNA MER1_type -6 209 1 854 267 24 28 chrX 122545824 122546075 -40053855 - MIR SINE MIR 0 262 13 35 0 0 0 chrX 122546122 122546157 -40053773 + AT_rich Low_complexity Low_complexity 1 35 0 505 317 12 12 chrX 122546285 122546449 -40053481 - MIR SINE MIR -84 178 15 23 0 0 0 chrX 122547181 122547204 -40052726 + AT_rich Low_complexity Low_complexity 1 23 0 260 329 40 0 chrX 122548103 122548179 -40051751 - L2 LINE L2 -8 3264 3186 1593 196 106 17 chrX 122548314 122548672 -40051258 + MSTD LTR MaLR 1 390 -6 270 349 18 23 chrX 122549127 122549257 -40050673 + MIR3 SINE MIR 37 164 -54 2324 235 60 25 chrX 122549997 122550644 -40049286 - L1ME1 LINE L1 -69 6031 5362 4838 179 14 12 chrX 122550665 122551616 -40048314 - L1MA8 LINE L1 -2 7708 6756 3836 232 52 14 chrX 122551598 122551902 -40048028 - L1MA8 LINE L1 -2555 5010 4719 * 8659 111 9 21 chrX 122551902 122553205 -40046725 - HSMAR1 DNA Mariner 0 1287 1 3836 232 52 14 chrX 122553205 122554913 -40045017 - L1MA8 LINE L1 -2846 4719 2908 3382 103 10 20 chrX 122554918 122555424 -40044506 - L1PA11 LINE L1 -1 6173 5673 2135 130 35 16 chrX 122555468 122555836 -40044094 - THE1C LTR MaLR 0 375 1 4233 118 7 7 chrX 122555843 122556454 -40043476 - THE1C-int LTR MaLR -7 1573 963 235 83 0 0 chrX 122556456 122556492 -40043438 + MLT2A1 LTR ERVL 1 36 -408 510 90 0 0 chrX 122556492 122556559 -40043371 + MLT2A1 LTR ERVL 290 356 -88 881 235 38 19 chrX 122556571 122556890 -40043040 - L1ME1 LINE L1 -922 5158 4834 * 2295 276 77 34 chrX 122556887 122558069 -40041861 - L1ME1 LINE L1 -3673 2407 1278 186 71 0 0 chrX 122558069 122558097 -40041833 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2120 126 0 3 chrX 122558097 122558382 -40041548 - AluSx SINE Alu -28 284 1 2295 276 77 34 chrX 122558382 122559116 -40040814 - L1ME1 LINE L1 -4801 1279 449 320 348 87 16 chrX 122559203 122559387 -40040543 - L1ME1 LINE L1 -5617 453 257 1458 184 36 0 chrX 122559507 122559784 -40040146 - L1PB4 LINE L1 -5 6151 5865 2431 54 0 3 chrX 122559984 122560282 -40039648 + AluY SINE Alu 1 297 -14 2511 211 23 21 chrX 122560300 122560860 -40039070 + L1MC3 LINE L1 5425 5985 -359 * 4553 230 14 3 chrX 122560854 122561781 -40038149 + L1MA3 LINE L1 16 952 -6613 4056 187 22 6 chrX 122561804 122562514 -40037416 + L1MA3 LINE L1 1073 1794 -5771 7770 171 35 12 chrX 122562515 122565186 -40034744 + L1MA3 LINE L1 4994 7724 0 6693 188 74 45 chrX 122565194 122566168 -40033762 + L1MC3 LINE L1 5970 6914 -871 2119 144 21 21 chrX 122566168 122566543 -40033387 - THE1C LTR MaLR 0 375 1 9552 127 37 21 chrX 122566543 122566735 -40033195 - THE1C-int LTR MaLR 0 1580 1392 2216 92 3 0 chrX 122566735 122567018 -40032912 + AluSg SINE Alu 1 284 -26 9552 127 37 21 chrX 122567018 122568381 -40031549 - THE1C-int LTR MaLR -188 1392 1 2041 153 24 19 chrX 122568381 122568754 -40031176 - THE1C LTR MaLR 0 375 1 6693 188 74 45 chrX 122568754 122569527 -40030403 + L1MC3 LINE L1 6913 7770 -15 5026 199 43 41 chrX 122569995 122570958 -40028972 + ERVL LTR ERVL 1888 2847 -2917 2084 109 36 7 chrX 122570958 122571261 -40028669 + AluSx SINE Alu 1 312 0 2293 104 0 22 chrX 122571267 122571583 -40028347 + AluSc SINE Alu 1 309 0 5026 199 43 41 chrX 122571583 122571694 -40028236 + ERVL LTR ERVL 2851 2972 -2792 500 291 106 22 chrX 122571712 122571891 -40028039 + MIR3 SINE MIR 15 208 0 1679 349 107 25 chrX 122571892 122572352 -40027578 - L3 LINE CR1 -97 1480 1059 1094 205 158 25 chrX 122572352 122572674 -40027256 - MLT1A1 LTR MaLR 0 365 1 1679 349 107 25 chrX 122572674 122573276 -40026654 - L3 LINE CR1 -518 1059 330 180 375 106 0 chrX 122573482 122573586 -40026344 + MIR SINE MIR 34 148 -114 184 338 28 28 chrX 122574372 122574443 -40025487 + L2 LINE L2 2764 2834 -480 318 297 31 109 chrX 122574535 122574764 -40025166 + L2 LINE L2 3007 3217 -55 183 162 0 0 chrX 122575077 122575114 -40024816 + (CA)n Simple_repeat Simple_repeat 1 37 0 291 136 0 0 chrX 122578194 122578253 -40021677 + (TG)n Simple_repeat Simple_repeat 1 59 0 353 334 44 63 chrX 122578292 122578612 -40021318 - L2 LINE L2 -248 3024 2712 1151 278 63 12 chrX 122578874 122579209 -40020721 - LTR40a LTR ERVL -167 352 1 256 369 94 31 chrX 122579855 122580015 -40019915 - MIR SINE MIR -48 214 45 25 75 0 0 chrX 122581132 122581185 -40018745 + AT_rich Low_complexity Low_complexity 1 53 0 921 316 136 55 chrX 122581735 122582172 -40017758 - L2 LINE L2 -5 3267 2867 2163 115 0 0 chrX 122582172 122582467 -40017463 + AluSx SINE Alu 4 298 -14 921 316 136 55 chrX 122582467 122583322 -40016608 - L2 LINE L2 -405 2867 1846 1171 202 101 92 chrX 122583331 122583787 -40016143 + MER41B LTR ERV1 142 601 -34 830 216 0 50 chrX 122583801 122584000 -40015930 - L1MD1 LINE L1 -59 6183 5995 903 90 0 0 chrX 122584038 122584171 -40015759 + L1PB1 LINE L1 6019 6151 0 364 174 81 0 chrX 122584241 122584327 -40015603 - L1MD1 LINE L1 -303 5939 5847 1175 195 50 4 chrX 122585908 122586169 -40013761 - L1MB5 LINE L1 -12 6162 5890 1584 134 37 0 chrX 122586170 122586439 -40013491 - L1MA4 LINE L1 -22 6278 6000 1932 170 35 33 chrX 122586439 122586833 -40013097 - L1MB5 LINE L1 -267 5907 5513 2751 223 15 19 chrX 122587166 122587250 -40012680 - L1MB7 LINE L1 -37 6147 6064 2582 44 0 0 chrX 122587250 122587547 -40012383 - AluY SINE Alu -14 297 1 2751 223 15 19 chrX 122587547 122588119 -40011811 - L1MB7 LINE L1 -120 6064 5492 2117 186 37 7 chrX 122588119 122588549 -40011381 + MER65A LTR ERV1 1 443 -2 316 206 0 0 chrX 122588830 122588893 -40011037 - L1MC4 LINE L1 -1339 6703 6641 1444 191 52 61 chrX 122588990 122589199 -40010731 - L1MB7 LINE L1 -690 5484 5275 1809 169 3 20 chrX 122589199 122589500 -40010430 - AluJo SINE Alu -14 298 3 1444 191 52 61 chrX 122589500 122589853 -40010077 - L1MB7 LINE L1 -899 5275 4947 1079 260 97 53 chrX 122589868 122590438 -40009492 - MER76 LTR ERV -32 656 1 1215 232 60 0 chrX 122590438 122590740 -40009190 - L1MB7 LINE L1 -1205 4941 4622 22 0 0 0 chrX 122590791 122590813 -40009117 + AT_rich Low_complexity Low_complexity 1 22 0 2135 128 3 0 chrX 122590817 122591123 -40008807 + AluSx SINE Alu 1 307 -5 266 329 0 0 chrX 122591534 122591610 -40008320 - MIR SINE MIR -65 143 68 230 200 36 0 chrX 122591835 122591890 -40008040 + L1MC4 LINE L1 6658 6714 -1328 324 70 0 0 chrX 122591897 122591940 -40007990 + (TG)n Simple_repeat Simple_repeat 2 44 0 507 287 85 76 chrX 122593062 122593379 -40006551 + MER102b DNA MER1_type 2 321 -20 425 270 0 0 chrX 122593550 122593639 -40006291 - MIR3 SINE MIR -32 176 88 259 125 75 0 chrX 122594275 122594315 -40005615 + L1MC4a LINE L1 7241 7283 -525 4362 36 2 0 chrX 122594412 122594933 -40004997 - L1PA4 LINE L1 -5 6150 5629 3770 158 28 58 chrX 122594980 122595069 -40004861 + L1MA4 LINE L1 4781 4871 -1429 2262 86 16 0 chrX 122595069 122595379 -40004551 + L1PA13 LINE L1 5841 6159 -4 3770 158 28 58 chrX 122595379 122596564 -40003366 + L1MA4 LINE L1 4871 6017 -283 299 195 92 0 chrX 122596571 122596658 -40003272 + L1MB3 LINE L1 6087 6181 -2 1043 233 98 0 chrX 122598211 122598447 -40001483 - MIR SINE MIR -2 260 2 906 230 34 0 chrX 122598664 122598868 -40001062 - MIR SINE MIR -26 236 26 355 296 11 0 chrX 122599189 122599277 -40000653 - L2 LINE L2 -10 3303 3215 946 101 16 0 chrX 122599277 122599406 -40000524 + AluSg/x SINE Alu 169 299 -11 351 298 138 39 chrX 122599409 122599590 -40000340 - L2 LINE L2 -94 3219 3021 2490 188 23 0 chrX 122599605 122600088 -39999842 + L1MB7 LINE L1 5667 6160 -24 1297 158 49 21 chrX 122600808 122601093 -39998837 + L1MB7 LINE L1 5746 6038 -146 2327 156 18 8 chrX 122601093 122601483 -39998447 + MER57A LTR ERV1 1 394 -9 650 163 35 0 chrX 122601491 122601632 -39998298 + L1MB7 LINE L1 6039 6184 0 320 321 0 0 chrX 122601647 122601731 -39998199 - L2 LINE L2 -302 3011 2928 * 1552 266 52 33 chrX 122601712 122602194 -39997736 - L2 LINE L2 -520 2794 2304 231 232 20 91 chrX 122602281 122602380 -39997550 - L2 LINE L2 -1029 2285 2194 223 352 22 11 chrX 122602405 122602496 -39997434 - L2 LINE L2 -2831 483 392 1986 233 67 29 chrX 122602565 122603144 -39996786 + MER67C LTR ERV1 49 649 -61 2706 35 3 0 chrX 122603161 122603471 -39996459 - AluY SINE Alu 0 311 1 336 303 15 149 chrX 122603545 122603740 -39996190 - L2 LINE L2 -97 3175 3007 2506 79 22 5 chrX 122603740 122604108 -39995822 + L1MA2 LINE L1 5931 6304 0 365 318 71 74 chrX 122604239 122604402 -39995528 - L2 LINE L2 -486 2828 2666 1778 155 60 0 chrX 122604402 122604686 -39995244 + AluSx SINE Alu 5 305 -7 365 318 71 74 chrX 122604686 122604887 -39995043 - L2 LINE L2 -648 2666 2465 2239 83 0 0 chrX 122606278 122606556 -39993374 + AluSc SINE Alu 17 294 -15 527 343 53 51 chrX 122606735 122607146 -39992784 - LTR33 LTR ERVL -100 421 10 232 352 0 0 chrX 122607632 122607703 -39992227 - Charlie8 DNA MER1_type -2166 251 181 393 250 133 0 chrX 122607706 122607834 -39992096 - MIR SINE MIR -21 241 97 1201 257 69 58 chrX 122607938 122608098 -39991832 - L1M3c LINE L1 -4566 1575 1418 3288 113 16 23 chrX 122608098 122608665 -39991265 - L1MA3 LINE L1 0 6305 5743 1201 257 69 58 chrX 122608665 122609158 -39990772 - L1M3c LINE L1 -4723 1418 915 424 319 42 81 chrX 122609216 122609623 -39990307 - L1M3c LINE L1 -5488 643 253 798 279 109 0 chrX 122610294 122610523 -39989407 + MIR SINE MIR 8 261 -1 4742 156 29 5 chrX 122613090 122613915 -39986015 - L1MA5A LINE L1 -24 6273 5429 1903 149 34 5 chrX 122613914 122614388 -39985542 + L1MA5A LINE L1 4939 5431 -743 * 21 89 0 0 chrX 122614388 122614444 -39985486 + AT_rich Low_complexity Low_complexity 1 56 0 493 298 7 13 chrX 122614535 122614686 -39985244 + MIR SINE MIR 113 262 0 355 346 30 30 chrX 122614764 122614966 -39984964 + MIR SINE MIR 61 262 0 1714 321 45 21 chrX 122615021 122615916 -39984014 - L2 LINE L2 -1 3312 2405 1018 246 123 74 chrX 122615916 122616448 -39983482 + MLT1E LTR MaLR 1 582 -10 3419 276 113 7 chrX 122616463 122617610 -39982320 - L2 LINE L2 -928 2386 1118 367 328 17 8 chrX 122618790 122618909 -39981021 + MER5A DNA MER1_type 63 182 -7 267 250 16 0 chrX 122618945 122619009 -39980921 + CT-rich Low_complexity Low_complexity 4 68 0 535 216 96 0 chrX 122619039 122619164 -39980766 - L2 LINE L2 0 3313 3177 1228 292 40 28 chrX 122619863 122620288 -39979642 - LTR16A LTR ERVL -3 447 18 251 348 62 53 chrX 122620444 122620688 -39979242 + MIR SINE MIR 2 247 -15 4129 143 56 44 chrX 122620785 122621640 -39978290 - L1MB7 LINE L1 -2 6182 5318 3822 200 29 32 chrX 122621640 122622560 -39977370 - L1MB5 LINE L1 -8 6402 5482 237 65 0 0 chrX 122622560 122622591 -39977339 + (TA)n Simple_repeat Simple_repeat 2 32 0 3822 200 29 32 chrX 122622591 122623027 -39976903 - L1MB5 LINE L1 -928 5482 5046 2739 154 18 10 chrX 122623034 122623535 -39976395 - L1MA5 LINE L1 -1 6299 5795 1294 164 0 0 chrX 122623565 122623784 -39976146 - L1MA5 LINE L1 -486 5814 5596 1415 218 59 17 chrX 122623878 122624287 -39975643 - L1MB5 LINE L1 -1465 4917 4492 * 2558 166 10 27 chrX 122624270 122624753 -39975177 - L1MB1 LINE L1 -36 6718 6244 1737 228 38 12 chrX 122624810 122625306 -39974624 - L1MB5 LINE L1 -1921 4461 3953 7724 24 0 0 chrX 122625307 122626648 -39973282 - L1PA3 LINE L1 0 6155 4815 9009 19 0 0 chrX 122626648 122627692 -39972238 + L1PA3 LINE L1 3776 4819 -1327 4233 255 39 18 chrX 122627689 122629673 -39970257 - L1MB5 LINE L1 -2417 3965 1945 * 3229 192 32 21 chrX 122629676 122630420 -39969510 - L1MB1 LINE L1 -753 5979 5228 19946 29 1 0 chrX 122630431 122632843 -39967087 - L1PA2 LINE L1 -767 5379 2967 6745 20 0 0 chrX 122632843 122633617 -39966313 + L1PA2 LINE L1 5372 6152 -3 6156 169 34 22 chrX 122633619 122634964 -39964966 - L1MB1 LINE L1 -1533 5199 3839 5451 186 8 7 chrX 122634992 122636966 -39962964 - L1MA4 LINE L1 -14 6872 4897 5097 255 71 13 chrX 122636967 122640086 -39959844 - L1MB1 LINE L1 -2885 3847 945 252 350 12 12 chrX 122640137 122640217 -39959713 - L1MB1 LINE L1 -6296 357 278 274 240 52 35 chrX 122640229 122640327 -39959603 - L1MA4 LINE L1 -5634 1019 269 262 333 0 0 chrX 122640573 122640642 -39959288 - L1MA4 LINE L1 -6316 337 269 250 346 13 0 chrX 122640661 122640739 -39959191 - L1MA4 LINE L1 -6297 356 278 233 294 15 29 chrX 122640776 122640844 -39959086 - L1MA4 LINE L1 -6309 344 278 265 315 56 11 chrX 122640862 122640951 -39958979 - L1MA4 LINE L1 -6287 366 274 826 332 72 27 chrX 122640960 122641608 -39958322 - L1M3de LINE L1 -5580 1073 572 189 0 0 0 chrX 122642107 122642128 -39957802 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 296 194 16 0 chrX 122642576 122642638 -39957292 - MER91B DNA MER1_type -127 63 1 240 86 0 0 chrX 122642733 122642768 -39957162 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chrX 122642829 122642857 -39957073 + AT_rich Low_complexity Low_complexity 1 28 0 10420 238 59 30 chrX 122642933 122643633 -39956297 - L1P3 LINE L1 -2124 4337 3659 11852 154 11 27 chrX 122643633 122646650 -39953280 - L1PA11 LINE L1 -1 6173 3177 7226 43 0 2 chrX 122646642 122648354 -39951576 - L1PA6 LINE L1 -2 6152 4445 * 10420 238 59 30 chrX 122646650 122650591 -39949339 - L1P3 LINE L1 -2802 3659 1258 227 31 31 0 chrX 122650591 122650623 -39949307 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 10420 238 59 30 chrX 122650623 122651910 -39948020 - L1P3 LINE L1 -5203 1258 10 459 272 59 33 chrX 122651923 122651991 -39947939 - L1M4c LINE L1 -2806 3576 3511 2208 106 48 28 chrX 122651991 122652348 -39947582 - THE1B LTR MaLR 0 364 1 10583 112 20 5 chrX 122652348 122653905 -39946025 - THE1B-int LTR MaLR 0 1580 1 1968 128 43 72 chrX 122653906 122654280 -39945650 - THE1B LTR MaLR -1 363 1 459 272 59 33 chrX 122654280 122654513 -39945417 - L1M4c LINE L1 -2870 3512 3264 * 1292 183 95 7 chrX 122654510 122654652 -39945278 - L1MA9 LINE L1 -2 6310 6182 195 42 0 0 chrX 122654652 122654676 -39945254 + (TG)n Simple_repeat Simple_repeat 1 24 0 1292 183 95 7 chrX 122654676 122654818 -39945112 - L1MA9 LINE L1 -130 6182 6001 901 209 12 81 chrX 122654813 122655072 -39944858 + L1MA9 LINE L1 5699 5939 -373 * 257 229 0 0 chrX 122655089 122655150 -39944780 - L1M4c LINE L1 -3113 3269 3209 1180 193 5 0 chrX 122655153 122655355 -39944575 - AluJb SINE Alu -22 290 88 1589 284 99 14 chrX 122655355 122656962 -39942968 - L1M4c LINE L1 -3170 3212 1370 429 318 106 39 chrX 122656967 122657471 -39942459 + MLT1H LTR MaLR 5 549 0 236 241 126 11 chrX 122657475 122657562 -39942368 + MLT1H-int LTR MaLR 6 102 -1269 1857 246 33 4 chrX 122657666 122658121 -39941809 + L1 LINE L1 2391 2858 -3288 6336 189 27 9 chrX 122658125 122660259 -39939671 + L1PA14 LINE L1 4006 6161 0 746 293 74 51 chrX 122660424 122661373 -39938557 - L1MEc LINE L1 -4725 2218 1013 530 306 48 48 chrX 122661860 122662233 -39937697 - L1MEc LINE L1 -6016 407 35 1684 31 4 0 chrX 122662825 122663057 -39936873 - L1P LINE L1 -807 5367 5132 7352 8 0 8 chrX 122663057 122663899 -39936031 + L1PA2 LINE L1 5319 6155 0 203 224 15 15 chrX 122667455 122667522 -39932408 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 928 76 0 0 chrX 122668855 122668974 -39930956 + L1PA10 LINE L1 6033 6151 -17 189 0 0 0 chrX 122669845 122669866 -39930064 + (GA)n Simple_repeat Simple_repeat 2 22 0 769 278 107 11 chrX 122669926 122670290 -39929640 - L1ME3A LINE L1 -141 6029 5631 307 301 55 136 chrX 122670311 122670583 -39929347 + L2 LINE L2 3016 3265 -7 40 0 0 0 chrX 122670650 122670690 -39929240 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrX 122670712 122670734 -39929196 + AT_rich Low_complexity Low_complexity 1 22 0 214 218 92 69 chrX 122670736 122670823 -39929107 - L2 LINE L2 -16 3256 3168 191 341 49 12 chrX 122671180 122671262 -39928668 - L2 LINE L2 -528 2786 2702 16011 162 20 2 chrX 122671849 122674529 -39925401 + L1M1 LINE L1 17 2745 -4820 563 182 33 126 chrX 122674526 122674678 -39925252 - L1MDb LINE L1 -4940 1600 1465 * 2114 128 0 3 chrX 122674678 122674997 -39924933 - AluSg SINE Alu 0 310 1 563 182 33 126 chrX 122674997 122675096 -39924834 - L1MDb LINE L1 -5075 1465 1358 183 246 58 43 chrX 122675494 122675563 -39924367 - L2 LINE L2 -368 2945 2876 28 0 0 0 chrX 122676312 122676340 -39923590 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chrX 122676401 122676429 -39923501 + AT_rich Low_complexity Low_complexity 1 28 0 257 279 101 0 chrX 122676528 122676607 -39923323 - L2 LINE L2 0 3313 3227 21 71 0 0 chrX 122676629 122676671 -39923259 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chrX 122677007 122677030 -39922900 + (T)n Simple_repeat Simple_repeat 1 23 0 384 22 0 0 chrX 122679088 122679133 -39920797 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 2729 172 9 67 chrX 122679222 122679774 -39920156 + MLT2B1 LTR ERVL 1 520 0 4396 175 53 10 chrX 122679949 122680784 -39919146 - L1PA16 LINE L1 -10 6156 5286 382 299 78 0 chrX 122680791 122680945 -39918985 - MLT2C1 LTR ERVL -229 168 3 1531 173 17 21 chrX 122681902 122682191 -39917739 + MER7A DNA MER2_type 61 346 0 193 221 162 29 chrX 122682582 122682650 -39917280 + MIR SINE MIR 57 133 -75 264 250 40 26 chrX 122682866 122682942 -39916988 - L2 LINE L2 -6 3307 3231 251 296 25 12 chrX 122682944 122683025 -39916905 + MIR SINE MIR 72 153 -109 754 394 27 11 chrX 122683036 122683475 -39916455 + L1M3c LINE L1 1 446 -5695 330 320 76 41 chrX 122683509 122683681 -39916249 + L1M3c LINE L1 257 434 -5707 2045 101 0 60 chrX 122683712 122684030 -39915900 + THE1B LTR MaLR 66 364 0 4052 134 98 34 chrX 122684030 122684534 -39915396 + MER4D LTR ERV1 26 497 -375 2204 124 0 0 chrX 122684534 122684840 -39915090 - AluSx SINE Alu -6 306 1 4052 134 98 34 chrX 122684840 122684856 -39915074 + MER4D LTR ERV1 497 511 -361 909 132 7 13 chrX 122684856 122685008 -39914922 - L1MA2 LINE L1 0 6304 6154 4052 134 98 34 chrX 122685008 122685245 -39914685 + MER4D LTR ERV1 511 832 -40 475 298 35 23 chrX 122685297 122685468 -39914462 - MIR SINE MIR -23 239 67 1816 183 29 49 chrX 122686759 122687325 -39912605 + MLT2A2 LTR ERVL 1 554 0 545 192 152 17 chrX 122688310 122688403 -39911527 - MER5A DNA MER1_type -6 183 104 2864 48 0 0 chrX 122688403 122688758 -39911172 - L1PA5 LINE L1 -7 6147 5793 545 192 152 17 chrX 122688758 122688818 -39911112 - MER5A DNA MER1_type -85 104 6 1093 248 22 3 chrX 122688828 122689139 -39910791 - L1MDa LINE L1 -3366 3174 2858 1908 134 3 19 chrX 122689153 122689504 -39910426 - MER4A LTR ERV1 0 664 261 568 130 11 11 chrX 122689508 122689600 -39910330 - MER4A LTR ERV1 -570 94 3 1907 208 73 21 chrX 122689632 122690335 -39909595 - L1MDa LINE L1 -3725 2815 2075 1248 289 69 43 chrX 122690319 122690472 -39909458 - L1MDa LINE L1 -5224 1316 1168 * 2385 163 84 36 chrX 122690472 122691032 -39908898 - LTR4 LTR ERV1 -1 587 1 1248 289 69 43 chrX 122691032 122691574 -39908356 - L1MDa LINE L1 -5372 1168 208 * 4483 190 21 23 chrX 122691566 122692805 -39907125 + L1PB4 LINE L1 4918 6153 -3 420 188 68 86 chrX 122692810 122692927 -39907003 - L1MDa LINE L1 -6329 211 97 242 163 38 12 chrX 122692927 122693007 -39906923 + (TA)n Simple_repeat Simple_repeat 1 82 0 298 281 21 10 chrX 122693081 122693177 -39906753 - MIR SINE MIR -110 152 56 207 293 40 13 chrX 122694459 122694534 -39905396 + MIR SINE MIR 5 81 -181 512 306 24 6 chrX 122694574 122694744 -39905186 + MIR SINE MIR 81 253 -9 8178 235 42 20 chrX 122695734 122696918 -39903012 + L1MB1 LINE L1 1960 3117 -3265 1506 179 44 7 chrX 122696918 122697215 -39902715 + AluJb SINE Alu 1 308 -4 8178 235 42 20 chrX 122697215 122698836 -39901094 + L1MB1 LINE L1 3117 4832 -1550 350 148 0 0 chrX 122698822 122698876 -39901054 + L1MA9 LINE L1 5621 5674 -638 * 1821 198 89 9 chrX 122698878 122699338 -39900592 + L1MA9 LINE L1 5776 6272 -40 3352 216 9 16 chrX 122699356 122700606 -39899324 + L1MB1 LINE L1 4783 6023 -381 1338 138 46 0 chrX 122700625 122700864 -39899066 + L1MA5A LINE L1 6044 6293 -4 533 151 32 156 chrX 122700875 122700935 -39898995 + L1MB1 LINE L1 6009 6075 -350 1946 75 37 51 chrX 122700935 122701229 -39898701 + AluSp SINE Alu 1 290 -23 533 151 32 156 chrX 122701229 122701354 -39898576 + L1MB1 LINE L1 6075 6171 -254 488 293 59 39 chrX 122702386 122702764 -39897166 - L1ME LINE L1 -460 5702 5317 5819 124 2 0 chrX 122702834 122703694 -39896236 + L1PA15 LINE L1 5304 6165 0 918 240 51 16 chrX 122703829 122704083 -39895847 - L1MCc LINE L1 -6142 281 19 2822 197 13 22 chrX 122704111 122704735 -39895195 - L1MB7 LINE L1 -15 6169 5552 207 0 0 0 chrX 122704842 122704865 -39895065 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 4593 148 55 22 chrX 122704866 122705612 -39894318 - L1PB3 LINE L1 -7 6147 5362 327 49 0 0 chrX 122705612 122705653 -39894277 + (TA)n Simple_repeat Simple_repeat 1 41 0 4593 148 55 22 chrX 122705653 122705867 -39894063 - L1PB3 LINE L1 -792 5362 5157 2442 84 0 0 chrX 122705872 122706182 -39893748 - AluSg SINE Alu 0 310 1 7264 209 19 22 chrX 122706182 122707992 -39891938 - L1MB7 LINE L1 -679 5489 3685 945 160 16 0 chrX 122707992 122708179 -39891751 - L1MA7 LINE L1 -1 6290 6101 7264 209 19 22 chrX 122708179 122708311 -39891619 - L1MB7 LINE L1 -2483 3685 3554 * 11895 229 28 43 chrX 122708308 122710481 -39889449 - L1PB3 LINE L1 -2 7571 5368 2304 101 0 0 chrX 122710481 122710778 -39889152 - AluSg SINE Alu -11 299 3 11895 229 28 43 chrX 122710778 122714037 -39885893 - L1PB3 LINE L1 -2205 5368 2106 306 272 0 43 chrX 122714015 122714220 -39885710 - L1PB3 LINE L1 -6373 1193 832 * 555 177 44 9 chrX 122714218 122714331 -39885599 - L1PB3 LINE L1 -7432 133 17 303 269 0 4 chrX 122714372 122714464 -39885466 - AluJ/FRAM SINE Alu -1 301 229 216 158 0 0 chrX 122714672 122714710 -39885220 + (TA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chrX 122714717 122714745 -39885185 + AT_rich Low_complexity Low_complexity 1 28 0 6870 147 23 5 chrX 122714745 122716956 -39882974 - L1MA1 LINE L1 -4 7717 5470 * 8219 230 15 6 chrX 122716940 122718646 -39881284 - L1MA1 LINE L1 -5830 1735 15 238 266 75 11 chrX 122718988 122719082 -39880848 - L1 LINE L1 -1314 4832 4733 23 0 0 0 chrX 122719196 122719219 -39880711 + AT_rich Low_complexity Low_complexity 1 23 0 2170 218 26 21 chrX 122720087 122720615 -39879315 + L1ME1 LINE L1 5466 5996 -170 396 311 119 25 chrX 122722085 122722320 -39877610 + L2 LINE L2 1758 2014 -1300 * 1223 265 71 60 chrX 122722316 122723114 -39876816 - L2 LINE L2 -3 3310 2508 261 289 39 19 chrX 122723139 122723243 -39876687 + L1ME LINE L1 5473 5578 -543 242 157 0 20 chrX 122723277 122723328 -39876602 + C-rich Low_complexity Low_complexity 2 51 0 1791 155 10 29 chrX 122723328 122723349 -39876581 - AluSx SINE Alu -8 304 284 735 71 0 0 chrX 122723349 122723447 -39876483 + (TTCTC)n Simple_repeat Simple_repeat 5 102 0 1791 155 10 29 chrX 122723447 122723735 -39876195 - AluSx SINE Alu -28 284 1 225 250 216 20 chrX 122723748 122723896 -39876034 + L1ME LINE L1 5617 5793 -328 576 292 76 21 chrX 122724254 122724291 -39875639 + MIR SINE MIR 2 36 -226 197 62 0 31 chrX 122724291 122724323 -39875607 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 576 292 76 21 chrX 122724323 122724521 -39875409 + MIR SINE MIR 36 250 -12 1729 118 34 61 chrX 122724681 122725036 -39874894 + MER4A LTR ERV1 261 664 0 38 22 0 0 chrX 122725085 122725130 -39874800 + AT_rich Low_complexity Low_complexity 1 45 0 410 294 56 0 chrX 122725279 122725405 -39874525 + MER94 DNA DNA 1 133 -1 1155 272 104 43 chrX 122725479 122726178 -39873752 + L2 LINE L2 2557 3307 -6 924 246 122 74 chrX 122727174 122727649 -39872281 - MLT1D LTR MaLR -7 498 1 1100 221 88 73 chrX 122728203 122728534 -39871396 - Charlie2 DNA MER1_type -80 2782 2436 2308 102 0 0 chrX 122728534 122728847 -39871083 - AluSq SINE Alu 0 313 1 1100 221 88 73 chrX 122728847 122729129 -39870801 - Charlie2 DNA MER1_type -426 2436 2160 1676 210 81 75 chrX 122729130 122729597 -39870333 - Charlie2b DNA MER1_type -1516 1266 792 2278 103 0 6 chrX 122729597 122729909 -39870021 + AluSx SINE Alu 1 310 -2 1676 210 81 75 chrX 122729909 122730080 -39869850 - Charlie2b DNA MER1_type -1990 792 624 4547 190 26 12 chrX 122730103 122731078 -39868852 - L1MA3 LINE L1 -1 7723 6736 1233 296 61 2 chrX 122731079 122731474 -39868456 - LTR16B LTR ERVL -46 418 1 436 248 131 40 chrX 122731550 122731772 -39868158 - L1ME LINE L1 -373 5748 5507 26156 134 12 18 chrX 122732115 122736786 -39863144 - L1PA8A LINE L1 0 6446 1764 207 0 0 0 chrX 122736786 122736809 -39863121 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 26156 134 12 18 chrX 122736809 122738562 -39861368 - L1PA8A LINE L1 -4682 1764 1 12617 213 44 15 chrX 122738560 122744404 -39855526 - L1MA3 LINE L1 -814 6751 27 * 941 290 175 18 chrX 122744404 122744953 -39854977 - Charlie2b DNA MER1_type -2146 636 2 4667 231 31 30 chrX 122745171 122747471 -39852459 - L1MC1 LINE L1 -5 6608 4219 1899 164 31 86 chrX 122747471 122747927 -39852003 - Tigger2a DNA MER2_type 0 434 4 4667 231 31 30 chrX 122747927 122749758 -39850172 - L1MC1 LINE L1 -2394 4219 2391 * 6631 166 140 42 chrX 122749729 122750841 -39849089 - L1MC1 LINE L1 -4498 1928 926 5587 120 12 55 chrX 122750841 122751667 -39848263 - L1PA13 LINE L1 0 6163 5402 1638 90 0 14 chrX 122751667 122751879 -39848051 + AluSc SINE Alu 88 296 -13 5587 120 12 55 chrX 122751879 122752578 -39847352 - L1PA13 LINE L1 -761 5402 4675 6631 166 140 42 chrX 122752578 122752624 -39847306 - L1MC1 LINE L1 -5500 926 886 213 43 0 65 chrX 122752624 122752670 -39847260 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 6631 166 140 42 chrX 122752670 122753189 -39846741 - L1MC1 LINE L1 -5540 886 86 1997 149 86 47 chrX 122753231 122753435 -39846495 - MSTB LTR MaLR -2 424 229 2289 105 3 0 chrX 122753435 122753741 -39846189 - AluSg SINE Alu -3 307 1 1997 149 86 47 chrX 122753741 122753944 -39845986 - MSTB LTR MaLR -197 229 1 24 77 0 0 chrX 122754058 122754110 -39845820 + AT_rich Low_complexity Low_complexity 1 52 0 1631 172 33 21 chrX 122754242 122754576 -39845354 + L1PB4 LINE L1 5816 6151 -5 4754 78 6 15 chrX 122755062 122755784 -39844146 - L1PA4 LINE L1 0 6155 5596 407 277 46 72 chrX 122955830 122956119 -39643811 + L1ME3A LINE L1 5831 6136 -26 335 271 117 79 chrX 122956339 122956630 -39643300 - L2 LINE L2 -1222 2092 1791 798 235 0 18 chrX 122957913 122958083 -39641847 - MER5B DNA MER1_type -5 173 7 180 0 0 0 chrX 122958382 122958402 -39641528 + (A)n Simple_repeat Simple_repeat 1 20 0 1693 226 8 5 chrX 122958569 122958950 -39640980 + L1MC1 LINE L1 5952 6333 0 869 283 116 0 chrX 122958950 122959364 -39640566 + L1M4c LINE L1 1088 1549 -4835 610 212 96 7 chrX 122959366 122959512 -39640418 + MLT1A1 LTR MaLR 1 159 -206 3350 105 22 6 chrX 122959512 122960015 -39639915 + L1P3 LINE L1 626 1136 -5325 15416 31 2 1 chrX 122960115 122961977 -39637953 + L1P LINE L1 3431 5294 -852 4776 252 43 11 chrX 122962077 122963138 -39636792 - L1ME LINE L1 -510 6154 5005 2079 109 0 17 chrX 122963138 122963440 -39636490 + AluSg SINE Alu 1 297 -13 4776 252 43 11 chrX 122963440 122964221 -39635709 - L1ME LINE L1 -1659 5005 4251 320 250 31 0 chrX 122964206 122964302 -39635628 - L1ME LINE L1 -4754 1892 1794 * 290 281 49 45 chrX 122964367 122964591 -39635339 - L1ME LINE L1 -6303 239 15 1185 295 72 18 chrX 122965332 122965983 -39633947 - L1MCa LINE L1 -1140 5286 4601 1527 318 63 31 chrX 122965991 122966643 -39633287 + L1M3d LINE L1 417 1089 -5214 1004 287 31 41 chrX 122966649 122966814 -39633116 + L1M3d LINE L1 1440 1605 -4777 2446 78 0 0 chrX 122966814 122967123 -39632807 + AluY SINE Alu 1 309 -2 1004 287 31 41 chrX 122967123 122967441 -39632489 + L1M3d LINE L1 1605 1997 -4385 5483 263 45 15 chrX 122967586 122969570 -39630360 - L1MCa LINE L1 -1854 4572 2530 255 153 35 47 chrX 122969574 122969659 -39630271 - L1MCa LINE L1 -4431 1995 1912 6605 98 14 65 chrX 122969660 122970789 -39629141 + MER11C LTR ERVK 1 1071 0 1701 243 24 24 chrX 122970940 122971484 -39628446 + L1MC/D LINE L1 4376 4919 -1227 2922 183 26 24 chrX 122971527 122971568 -39628362 + L1MC/D LINE L1 5047 5086 -1247 1224 206 60 25 chrX 122971568 122971591 -39628339 - AluJo SINE Alu -6 296 275 423 0 0 0 chrX 122971591 122971638 -39628292 + (TC)n Simple_repeat Simple_repeat 2 48 0 1224 206 60 25 chrX 122971638 122971896 -39628034 - AluJo SINE Alu -27 275 5 2922 183 26 24 chrX 122971896 122971946 -39627984 + L1MC/D LINE L1 5086 5134 -1199 1902 163 3 0 chrX 122971946 122972234 -39627696 - AluSx SINE Alu -23 289 1 2922 183 26 24 chrX 122972234 122972901 -39627029 + L1MC/D LINE L1 5134 5802 -531 349 331 21 1 chrX 122973872 122973990 -39625940 + MIR SINE MIR 1 121 -87 317 303 81 0 chrX 122974122 122974221 -39625709 + MIR SINE MIR 30 136 -72 199 338 15 15 chrX 122974235 122974303 -39625627 + L2 LINE L2 3197 3264 -8 2551 64 0 0 chrX 122974973 122975284 -39624646 + AluY SINE Alu 1 311 0 228 115 16 33 chrX 122975321 122975382 -39624548 + (GA)n Simple_repeat Simple_repeat 1 60 0 1584 184 7 13 chrX 122975581 122975919 -39624011 - AluSx SINE Alu 0 312 1 367 300 45 9 chrX 122975925 122976145 -39623785 - L1M4 LINE L1 -3111 3035 2808 4187 194 37 9 chrX 122976405 122977462 -39622468 - L1MB5 LINE L1 0 6985 5900 261 0 0 0 chrX 122977481 122977510 -39622420 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 336 306 65 41 chrX 122977848 122978018 -39621912 - HAL1 LINE L1 -741 1766 1593 27 94 0 0 chrX 122979315 122979379 -39620551 + AT_rich Low_complexity Low_complexity 1 64 0 3901 213 7 13 chrX 122979581 122980441 -39619489 - L1MB5 LINE L1 -1945 5012 4158 20829 97 13 10 chrX 122980557 122982823 -39617107 - L1PA6 LINE L1 -292 5862 3603 2266 88 3 0 chrX 122982823 122983119 -39616811 - AluY SINE Alu -14 297 1 20829 97 13 10 chrX 122983119 122984329 -39615601 - L1PA6 LINE L1 -2551 3603 2379 200 31 62 0 chrX 122984329 122984361 -39615569 + T-rich Low_complexity Low_complexity 2 35 0 20829 97 13 10 chrX 122984361 122984526 -39615404 - L1PA6 LINE L1 -3775 2379 2216 1654 255 60 59 chrX 122984635 122985384 -39614546 - L1MB5 LINE L1 -5180 1679 930 456 332 23 28 chrX 122985915 122986132 -39613798 - L1MB5 LINE L1 -6633 226 11 443 18 18 0 chrX 122986194 122986250 -39613680 + (CA)n Simple_repeat Simple_repeat 2 58 0 271 223 45 89 chrX 122986252 122986409 -39613521 + MER103 DNA DNA 2 151 -15 180 179 0 0 chrX 122986435 122986474 -39613456 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 310 291 126 7 chrX 122987088 122987239 -39612691 + MIR SINE MIR 67 235 -27 412 314 131 18 chrX 122987427 122987656 -39612274 - MIR SINE MIR -6 256 2 25 31 0 0 chrX 122987720 122987752 -39612178 + AT_rich Low_complexity Low_complexity 1 32 0 1936 168 30 30 chrX 122988668 122989031 -39610899 + THE1B LTR MaLR 2 364 0 9604 137 35 3 chrX 122989031 122990562 -39609368 + THE1A-int LTR MaLR 1 1580 0 2318 131 3 19 chrX 122990564 122990923 -39609007 + THE1A LTR MaLR 3 355 0 1823 167 44 22 chrX 122991199 122991565 -39608365 - THE1C LTR MaLR 0 375 2 226 262 0 24 chrX 122991577 122991661 -39608269 + (TA)n Simple_repeat Simple_repeat 1 82 0 10514 130 39 9 chrX 122992427 122995372 -39604558 - L1PBa LINE L1 -3050 3812 634 1128 132 5 0 chrX 122995375 122995565 -39604365 - L1PBa LINE L1 -6668 195 5 702 200 86 0 chrX 122995694 122995869 -39604061 - L1MA8 LINE L1 -2 6289 6100 * 1539 202 21 15 chrX 122995865 122996332 -39603598 + L1M2 LINE L1 5048 5515 -743 5271 192 25 19 chrX 122996354 122997536 -39602394 - L1M1 LINE L1 -1823 5742 4554 3728 97 2 0 chrX 122997536 122998063 -39601867 - L1PA12 LINE L1 0 6168 5641 1333 156 189 11 chrX 122998104 122998379 -39601551 + LOR1b LTR ERV1 138 461 0 2545 113 30 0 chrX 122998379 122998905 -39601025 - L1PA12 LINE L1 -524 5644 5105 2771 274 82 21 chrX 122999163 123000743 -39599187 - L1M1 LINE L1 -3895 3670 2259 2038 123 44 27 chrX 123000745 123001112 -39598818 - THE1C LTR MaLR -2 373 1 4346 201 25 39 chrX 123001124 123001783 -39598147 - L1PB4 LINE L1 0 6156 5490 2367 72 3 10 chrX 123001783 123002087 -39597843 - AluSp SINE Alu -11 302 1 4346 201 25 39 chrX 123002087 123003246 -39596684 - L1PB4 LINE L1 -666 5490 4357 326 189 9 0 chrX 123003354 123003465 -39596465 + (CATTC)n Simple_repeat Simple_repeat 4 115 0 300 343 76 12 chrX 123004524 123004696 -39595234 + MER117 DNA MER1_type 13 195 -2 1541 201 3 24 chrX 123005439 123005777 -39594153 + L1M3 LINE L1 5391 5721 -447 197 134 45 15 chrX 123005807 123005874 -39594056 + (TA)n Simple_repeat Simple_repeat 1 69 0 207 0 0 0 chrX 123005913 123005936 -39593994 + (TA)n Simple_repeat Simple_repeat 1 23 0 436 285 27 32 chrX 123006029 123006250 -39593680 + L1MB1 LINE L1 4109 4328 -1818 1800 175 14 22 chrX 123006252 123006623 -39593307 - L1MB1 LINE L1 -1240 4906 4539 4188 212 14 28 chrX 123006626 123007215 -39592715 + L1MB1 LINE L1 4902 5498 -691 2027 140 3 0 chrX 123007215 123007523 -39592407 + AluSg SINE Alu 1 309 -1 4188 212 14 28 chrX 123007523 123008226 -39591704 + L1MB1 LINE L1 5498 6175 -14 * 4421 235 17 12 chrX 123008220 123009197 -39590733 + L1PA16 LINE L1 12 993 -6572 2863 122 65 21 chrX 123009297 123009820 -39590110 + MER4-int LTR ERV1 5852 6397 -201 2057 143 0 0 chrX 123009830 123010131 -39589799 + AluSx SINE Alu 12 312 0 1017 111 19 0 chrX 123010170 123010332 -39589598 + L1PB2 LINE L1 5952 6116 -35 504 208 38 9 chrX 123010332 123010438 -39589492 + L2 LINE L2 2762 2870 -444 4247 177 17 15 chrX 123010443 123011256 -39588674 + L1MC1 LINE L1 5490 6304 -29 1452 195 19 4 chrX 123011356 123011623 -39588307 - AluJb SINE Alu -40 272 2 696 287 28 19 chrX 123013540 123013857 -39586073 + L1PA16 LINE L1 2071 2390 -5176 * 9502 212 24 27 chrX 123013848 123014128 -39585802 + L1PA16 LINE L1 4072 4351 -3234 2005 175 11 16 chrX 123014128 123014505 -39585425 + THE1C LTR MaLR 1 375 0 9502 212 24 27 chrX 123014505 123017623 -39582307 + L1PA16 LINE L1 4351 7449 -136 4922 31 0 0 chrX 123017620 123018238 -39581692 + L1PA3 LINE L1 2888 3505 -2641 * 6825 30 0 0 chrX 123018338 123019144 -39580786 + L1PA3 LINE L1 5347 6152 -3 621 194 45 0 chrX 123019172 123019306 -39580624 + L1PA16 LINE L1 7442 7581 -4 357 238 99 20 chrX 123019924 123020023 -39579907 + MER63 DNA MER1_type 1 733 -103 3005 104 19 0 chrX 123020023 123020446 -39579484 - MLT2A1 LTR ERVL 0 444 14 287 235 25 17 chrX 123020546 123020665 -39579265 + L1MC/D LINE L1 2275 2394 -3990 1433 202 96 11 chrX 123020688 123021215 -39578715 + L1MC/D LINE L1 2988 3574 -2808 22 35 0 0 chrX 123021226 123021255 -39578675 + AT_rich Low_complexity Low_complexity 1 29 0 3578 238 22 1 chrX 123021595 123022501 -39577429 + L1MC/D LINE L1 3628 4552 -1830 439 168 89 10 chrX 123022495 123022596 -39577334 + L1MB1 LINE L1 5788 5896 -293 * 330 319 68 32 chrX 123022601 123022939 -39576991 - HAL1 LINE L1 -1144 1363 1014 697 262 89 23 chrX 123024279 123024493 -39575437 - MIR SINE MIR -14 248 21 447 366 65 42 chrX 123024527 123024956 -39574974 + L1MC/D LINE L1 5545 5983 -2061 408 337 71 11 chrX 123024976 123025160 -39574770 - L2 LINE L2 -13 3300 3106 345 287 234 36 chrX 123025247 123025414 -39574516 - L2 LINE L2 -376 2938 2739 2218 108 0 0 chrX 123025422 123025718 -39574212 - AluSc SINE Alu -13 296 1 208 379 10 10 chrX 123026961 123027064 -39572866 + MIR SINE MIR 49 151 -57 3907 13 0 9 chrX 123027095 123027552 -39572378 - L1PA2 LINE L1 -1 6154 5702 302 302 48 24 chrX 123027646 123027772 -39572158 - MIR SINE MIR -14 248 120 21 0 0 0 chrX 123027846 123027867 -39572063 + AT_rich Low_complexity Low_complexity 1 21 0 743 252 0 6 chrX 123028077 123028236 -39571694 - MLT1A1 LTR MaLR 0 365 208 22 0 0 0 chrX 123029113 123029135 -39570795 + AT_rich Low_complexity Low_complexity 1 22 0 2298 79 0 58 chrX 123029313 123029642 -39570288 + AluSg SINE Alu 1 310 0 464 343 28 12 chrX 123029665 123029916 -39570014 + L1M4 LINE L1 5 259 -6283 1902 225 16 6 chrX 123030121 123030619 -39569311 - L1 LINE L1 -1183 4963 4461 * 8822 134 43 2 chrX 123030618 123032121 -39567809 - L1PBa LINE L1 -4173 2690 1126 22 56 0 0 chrX 123032121 123032157 -39567773 + AT_rich Low_complexity Low_complexity 1 36 0 8294 27 0 0 chrX 123032157 123033900 -39566030 - L1PA3 LINE L1 -4 6151 4406 16346 23 1 1 chrX 123033900 123035862 -39564068 + L1PA3 LINE L1 2473 4436 -1710 1410 192 0 0 chrX 123035842 123036102 -39563828 - L1PBa LINE L1 -5724 1139 880 * 1645 208 45 49 chrX 123036102 123036643 -39563287 - MLT2A2 LTR ERVL -2 552 1 5199 141 19 14 chrX 123036645 123037524 -39562406 - L1PBa LINE L1 -5979 884 1 23 0 0 0 chrX 123037741 123037764 -39562166 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 123037785 123037813 -39562117 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 123037826 123037854 -39562076 + AT_rich Low_complexity Low_complexity 1 28 0 2707 182 14 2 chrX 123037956 123038450 -39561480 + L1MB3 LINE L1 5605 6104 -79 2553 180 29 22 chrX 123038478 123039060 -39560870 - L1MA7 LINE L1 -8 6283 5698 6984 182 31 7 chrX 123039060 123040820 -39559110 + L1MA7 LINE L1 3879 5684 -607 907 229 38 45 chrX 123040823 123041111 -39558819 + pTR5 LTR ERV1 743 1028 -1410 4824 105 97 1 chrX 123041306 123042059 -39557871 + LTR12 LTR ERV1 1 825 -1 490 148 11 0 chrX 123042091 123042179 -39557751 + L1MB3 LINE L1 6088 6176 -7 306 246 118 62 chrX 123042236 123042431 -39557499 - L1M4 LINE L1 -2978 3168 2963 281 302 10 10 chrX 123042472 123042568 -39557362 - MLT1J1 LTR MaLR -6 440 345 213 330 55 22 chrX 123042712 123042803 -39557127 - L2 LINE L2 -8 3264 3171 273 302 31 39 chrX 123042823 123042952 -39556978 + MIR SINE MIR 45 172 -90 21 57 0 0 chrX 123042980 123043015 -39556915 + AT_rich Low_complexity Low_complexity 1 35 0 545 289 29 6 chrX 123043868 123044041 -39555889 - MER45A DNA AcHobo 0 178 2 1747 153 31 6 chrX 123044095 123044421 -39555509 - L1MA4A LINE L1 -6 6297 5964 6702 151 15 33 chrX 123044521 123045837 -39554093 + L1P3 LINE L1 1005 2342 -4119 2389 188 39 4 chrX 123045939 123046455 -39553475 - L1MA4A LINE L1 -844 5302 4769 22 88 0 0 chrX 123046464 123046521 -39553409 + AT_rich Low_complexity Low_complexity 1 57 0 821 313 12 4 chrX 123046546 123046786 -39553144 + MLT1J LTR MaLR 61 302 -209 487 322 107 4 chrX 123046786 123047019 -39552911 - L1ME LINE L1 -376 5786 5530 731 383 75 23 chrX 123047038 123047776 -39552154 - L2 LINE L2 -36 3277 2491 818 231 31 0 chrX 123048637 123048797 -39551133 + MLT1A1 LTR MaLR 201 365 0 407 309 85 51 chrX 123048798 123049232 -39550698 + L1MEc LINE L1 1551 2147 -4416 256 268 47 24 chrX 123049226 123049353 -39550577 + L1MEc LINE L1 1731 1860 -4536 * 278 103 75 19 chrX 123049577 123049684 -39550246 + (TA)n Simple_repeat Simple_repeat 2 114 0 3193 259 39 21 chrX 123049782 123051199 -39548731 + L1MEc LINE L1 1894 3331 -2884 2614 216 76 18 chrX 123051233 123051799 -39548131 - MER21B LTR ERV1 -264 599 1 2341 161 100 41 chrX 123051880 123052389 -39547541 - MER21B-int LTR ERV1 -49 4142 3604 799 275 24 20 chrX 123052382 123052633 -39547297 - LTR23-int LTR ERV1 -85 5038 4787 * 185 266 133 71 chrX 123053209 123053322 -39546608 + L3b LINE CR1 1442 1561 -22 1383 121 10 0 chrX 123053663 123053870 -39546060 - L1PB1 LINE L1 -167 7403 7195 303 203 0 0 chrX 123053870 123053934 -39545996 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 235 167 0 0 chrX 123053934 123053982 -39545948 + LTR66 LTR ERVL 394 441 -169 312 158 0 0 chrX 123053982 123054039 -39545891 + (TA)n Simple_repeat Simple_repeat 1 57 0 3395 177 6 0 chrX 123054039 123055117 -39544813 - L1PB1 LINE L1 -360 7210 6128 1939 216 0 0 chrX 123055115 123055514 -39544416 + L1MEc LINE L1 4044 4442 -1773 * 1231 217 40 60 chrX 123056289 123056709 -39543221 - LTR56 LTR ERV1 0 445 34 1491 262 11 0 chrX 123056747 123057094 -39542836 - MER21-int LTR ERV1 -977 3214 2864 711 131 0 0 chrX 123057094 123057193 -39542737 - AluSp/q SINE Alu -49 264 166 866 125 0 22 chrX 123057352 123057488 -39542442 - AluSq/x SINE Alu -179 133 1 2780 216 37 21 chrX 123057492 123058163 -39541767 - MER21-int LTR ERV1 -1324 2867 2186 393 138 46 0 chrX 123058159 123058224 -39541706 - MER21-int LTR ERV1 -2179 2012 1945 * 8330 236 36 24 chrX 123058257 123060806 -39539124 - L1PB1 LINE L1 -1483 6082 3497 2981 193 22 6 chrX 123060806 123061491 -39538439 + L1 LINE L1 3984 4679 -1467 1836 235 132 22 chrX 123061506 123062090 -39537840 - L1PB1 LINE L1 -6905 660 13 1643 247 57 18 chrX 123062094 123062605 -39537325 - MER21-int LTR ERV1 -2533 1658 1128 409 302 0 0 chrX 123062771 123062867 -39537063 + MIR SINE MIR 41 136 -72 273 266 0 16 chrX 123063640 123063704 -39536226 - L2 LINE L2 -5 3267 3205 724 344 62 39 chrX 123064203 123064843 -39535087 - L1ME3 LINE L1 -169 5993 5339 3900 164 28 8 chrX 123064878 123065622 -39534308 + L1PB4 LINE L1 5395 6153 -3 10122 213 81 7 chrX 123065629 123067933 -39531997 + L1MA1 LINE L1 17 2491 -5074 795 244 5 0 chrX 123067932 123068129 -39531801 + L1MA1 LINE L1 3795 3992 -3573 * 8739 187 16 29 chrX 123068243 123068610 -39531320 + L1MA1 LINE L1 4413 4783 -2938 7793 72 4 4 chrX 123068610 123069617 -39530313 + LTR13 LTR ERVK 1 1007 0 8739 187 16 29 chrX 123069617 123070069 -39529861 + L1MA1 LINE L1 4783 5239 -2482 5665 36 0 3 chrX 123070069 123070741 -39529189 + L1PA5 LINE L1 5474 6143 -11 207 0 0 0 chrX 123070742 123070765 -39529165 + (TA)n Simple_repeat Simple_repeat 1 23 0 8739 187 16 29 chrX 123070765 123071597 -39528333 + L1MA1 LINE L1 5239 6080 -1641 2223 102 24 0 chrX 123071597 123071890 -39528040 - AluSc SINE Alu -9 300 1 8739 187 16 29 chrX 123071890 123073360 -39526570 + L1MA1 LINE L1 6080 7497 -224 722 158 43 0 chrX 123073427 123073591 -39526339 + L1MA2 LINE L1 6037 6207 -97 531 269 50 65 chrX 123074177 123074302 -39525628 + Charlie7 DNA MER1_type 417 542 -2070 2161 112 26 0 chrX 123074302 123074606 -39525324 + AluSx SINE Alu 1 312 0 531 269 50 65 chrX 123074606 123074878 -39525052 + Charlie7 DNA MER1_type 542 808 -1804 17550 203 23 66 chrX 123074934 123082732 -39517198 + L1PA13 LINE L1 1 7448 -153 1814 180 16 39 chrX 123082732 123083116 -39516814 + THE1C LTR MaLR 1 375 0 17550 203 23 66 chrX 123083116 123083264 -39516666 + L1PA13 LINE L1 7448 7601 0 323 215 0 0 chrX 123083492 123083557 -39516373 + L1MA4 LINE L1 5930 5994 -306 36 19 0 19 chrX 123083590 123083623 -39516307 + AT_rich Low_complexity Low_complexity 1 34 -19 1803 140 35 0 chrX 123083623 123083965 -39515965 - L1MA2 LINE L1 0 6304 5951 36 19 0 19 chrX 123083965 123083985 -39515945 + AT_rich Low_complexity Low_complexity 34 53 0 1400 123 9 0 chrX 123084113 123084340 -39515590 - L1MA2 LINE L1 -345 5957 5729 3855 215 95 25 chrX 123084446 123085820 -39514110 - L1 LINE L1 -2006 4842 3374 2006 162 39 32 chrX 123085829 123086376 -39513554 - MLT2A2 LTR ERVL 0 554 1 562 277 48 0 chrX 123086377 123086565 -39513365 - L1 LINE L1 -3480 3368 3172 4129 276 64 68 chrX 123086566 123087012 -39512918 - L1 LINE L1 -4644 2205 1759 1077 82 0 0 chrX 123087012 123087158 -39512772 - L1MA2 LINE L1 0 6304 6159 4129 276 64 68 chrX 123087158 123088914 -39511016 - L1 LINE L1 -5090 1759 12 5665 224 95 32 chrX 123088938 123090701 -39509229 - L1M3e LINE L1 -5042 1988 115 1830 315 40 55 chrX 123091482 123092465 -39507465 + L2 LINE L2 1902 2869 -445 437 321 48 11 chrX 123093903 123094090 -39505840 - MIR SINE MIR -65 197 4 7499 106 56 2 chrX 123094254 123096629 -39503301 + L1PBa LINE L1 3 2648 -4215 569 115 0 0 chrX 123096631 123096709 -39503221 + AluS SINE Alu 3 80 -232 3053 221 7 0 chrX 123096810 123097526 -39502404 - L1 LINE L1 -2123 5442 4722 219 62 21 42 chrX 123097594 123097642 -39502288 + (TA)n Simple_repeat Simple_repeat 1 47 0 7384 134 36 44 chrX 123097642 123097960 -39501970 - L1 LINE L1 -4170 3395 3076 986 46 0 23 chrX 123097960 123098091 -39501839 - L1PA3 LINE L1 -1 6154 6027 7384 134 36 44 chrX 123098091 123098159 -39501771 - L1 LINE L1 -4489 3076 3009 337 43 0 0 chrX 123098159 123098205 -39501725 - MADE1 DNA Mariner 0 80 35 7384 134 36 44 chrX 123098205 123099313 -39500617 - L1 LINE L1 -4556 3009 1868 1999 176 36 32 chrX 123099314 123099863 -39500067 - MLT2A2 LTR ERVL 0 554 1 7999 230 13 20 chrX 123099863 123101348 -39498582 - L1 LINE L1 -5694 1871 401 1899 114 0 0 chrX 123101348 123101602 -39498328 - AluSg SINE Alu -56 254 1 7999 230 13 20 chrX 123101602 123101986 -39497944 - L1 LINE L1 -7164 401 16 250 191 48 24 chrX 123101992 123102076 -39497854 + L1MB4 LINE L1 6095 6180 0 1723 213 41 20 chrX 123102651 123103111 -39496819 + Tigger6b DNA MER2_type 14 483 -1114 1732 262 50 76 chrX 123103346 123103986 -39495944 - L2 LINE L2 -1 3312 2694 1487 127 12 0 chrX 123103986 123104238 -39495692 - L1MA3 LINE L1 0 6305 6051 1732 262 50 76 chrX 123104238 123104577 -39495353 - L2 LINE L2 -619 2694 2348 222 325 113 38 chrX 123104583 123104743 -39495187 + L2 LINE L2 2698 2869 -445 2030 186 9 0 chrX 123104894 123105227 -39494703 + MER1B DNA MER1_type 2 337 0 1529 165 50 53 chrX 123105368 123105744 -39494186 + THE1C LTR MaLR 1 375 0 3284 165 10 15 chrX 123105744 123106338 -39493592 + THE1C-int LTR MaLR 1 591 -1060 2009 233 99 34 chrX 123106351 123106797 -39493133 - MER50 LTR ERV1 0 734 228 2889 68 0 0 chrX 123106797 123107193 -39492737 - L1PA8 LINE L1 0 6172 5792 2009 233 99 34 chrX 123107193 123107424 -39492506 - MER50 LTR ERV1 -506 228 13 6077 164 5 17 chrX 123107430 123108463 -39491467 + THE1C-int LTR MaLR 561 1580 0 1560 183 57 41 chrX 123108465 123108832 -39491098 + THE1C LTR MaLR 3 375 0 199 281 49 49 chrX 123108842 123108924 -39491006 + L2 LINE L2 3231 3312 -1 1794 161 46 3 chrX 123109114 123109419 -39490511 + THE1B LTR MaLR 47 364 0 9902 130 37 8 chrX 123109419 123110954 -39488976 + THE1B-int LTR MaLR 1 1580 0 2150 143 43 6 chrX 123110954 123111305 -39488625 + THE1B LTR MaLR 1 364 0 1500 201 65 14 chrX 123111761 123112130 -39487800 + MLT1B LTR MaLR 3 390 0 21 0 0 0 chrX 123112173 123112194 -39487736 + AT_rich Low_complexity Low_complexity 1 21 0 261 314 183 7 chrX 123112344 123112481 -39487449 - MER5A DNA MER1_type -10 179 19 197 266 133 82 chrX 123112346 123112504 -39487426 + MER5B DNA MER1_type 12 177 -1 * 3407 70 9 5 chrX 123112675 123113117 -39486813 + MLT2A1 LTR ERVL 1 444 0 11054 58 2 0 chrX 123113117 123114473 -39485457 + HERVL-A1 LTR ERVL 1 1359 -4295 7472 88 7 16 chrX 123114466 123115486 -39484444 + HERVL LTR ERVL 4334 5344 -310 * 26345 35 2 3 chrX 123115589 123118839 -39481091 - L1P LINE L1 -769 5377 2131 8281 148 47 58 chrX 123118940 123121173 -39478757 - MER61D-int LTR ERV1 -300 4917 2662 3359 64 0 7 chrX 123121173 123121624 -39478306 - LTR7 LTR ERV1 -2 448 1 8281 148 47 58 chrX 123121624 123122880 -39477050 - MER61D-int LTR ERV1 -2555 2662 224 344 204 56 37 chrX 123123032 123123140 -39476790 - MER61D-int LTR ERV1 -6478 518 409 * 485 282 20 27 chrX 123123137 123123286 -39476644 - MER61D-int LTR ERV1 -5068 149 2 2362 173 108 2 chrX 123123286 123123714 -39476216 - MER61D LTR ERV1 0 501 29 18094 94 6 19 chrX 123124229 123126935 -39472995 + L1PA5 LINE L1 617 3288 -2858 27926 49 2 4 chrX 123127035 123130618 -39469312 - L1P LINE L1 -930 5216 1640 6769 76 1 0 chrX 123130718 123132336 -39467594 + L1PA5 LINE L1 4531 6150 -4 3272 144 28 7 chrX 123132342 123132912 -39467018 + L1PA13 LINE L1 1524 2105 -4682 2751 223 9 5 chrX 123133025 123133594 -39466336 - LTR25-int LTR ERV1 -3619 572 2 5576 245 44 26 chrX 123133643 123135704 -39464226 + L1MB7 LINE L1 3419 5520 -654 1346 220 10 39 chrX 123135703 123136116 -39463814 + L1MB7 LINE L1 5784 6184 0 * 1121 15 0 0 chrX 123136120 123136250 -39463680 - L1PA3 LINE L1 -268 5887 5758 589 14 0 0 chrX 123136250 123136349 -39463581 + L1PA3 LINE L1 6074 6174 0 291 368 19 9 chrX 123137000 123137106 -39462824 + MER5A DNA MER1_type 77 183 -6 26 0 0 0 chrX 123137754 123137780 -39462150 + AT_rich Low_complexity Low_complexity 1 26 0 477 0 0 0 chrX 123138692 123138745 -39461185 + (TG)n Simple_repeat Simple_repeat 2 54 0 1113 292 79 57 chrX 123140573 123141220 -39458710 - MLT2F LTR ERVL 0 663 3 2706 16 0 26 chrX 123141813 123142123 -39457807 - AluYb8 SINE Alu -3 315 14 306 0 0 0 chrX 123142615 123142649 -39457281 + (CA)n Simple_repeat Simple_repeat 1 34 0 272 127 18 0 chrX 123142649 123142704 -39457226 + GA-rich Low_complexity Low_complexity 1 56 0 239 329 103 27 chrX 123143144 123143290 -39456640 + MLT2F LTR ERVL 65 221 -442 4031 220 25 21 chrX 123143365 123144564 -39455366 + L1M4c LINE L1 777 2074 -4310 17977 194 31 18 chrX 123144567 123149269 -39450661 + L1MA1 LINE L1 27 4790 -2775 9324 166 7 19 chrX 123149287 123152282 -39447648 + L1MA1 LINE L1 4762 7717 -4 3374 247 53 13 chrX 123152323 123153486 -39446444 + L1M4c LINE L1 2085 3337 -3045 1935 119 39 3 chrX 123153486 123153771 -39446159 + AluSg SINE Alu 1 295 -15 3374 247 53 13 chrX 123153771 123154252 -39445678 + L1M4c LINE L1 3337 3798 -2584 35 0 0 0 chrX 123154266 123154301 -39445629 + AT_rich Low_complexity Low_complexity 1 35 0 1462 218 3 9 chrX 123154301 123154636 -39445294 - L1 LINE L1 -2111 4035 3703 339 229 12 0 chrX 123154635 123154718 -39445212 + L1MA10 LINE L1 6130 6213 -121 * 912 200 15 0 chrX 123154636 123154835 -39445095 + L1MA10 LINE L1 6130 6332 -2 727 244 36 4 chrX 123154957 123155182 -39444748 + L1M4c LINE L1 3814 4045 -2337 212 0 0 35 chrX 123155251 123155280 -39444650 + (TTA)n Simple_repeat Simple_repeat 1 28 0 14070 31 2 0 chrX 123155281 123157716 -39442214 - L1PA3 LINE L1 -18 6137 3698 3875 61 4 6 chrX 123157716 123158259 -39441671 + L1P LINE L1 3198 3739 -2407 1859 177 33 34 chrX 123159753 123160257 -39439673 + MLT2A2 LTR ERVL 1 514 -40 2127 126 3 0 chrX 123161648 123161941 -39437989 + AluSx SINE Alu 1 294 -18 244 279 103 39 chrX 123162622 123163010 -39436920 - L1MC/D LINE L1 -407 5714 5391 196 293 146 12 chrX 123164447 123164529 -39435401 + MIR SINE MIR 9 101 -161 826 265 30 22 chrX 123164531 123164659 -39435271 + MIR SINE MIR 10 142 -120 3949 151 80 31 chrX 123164659 123165520 -39434410 - MER4D LTR ERV1 0 903 1 826 265 30 22 chrX 123165520 123165621 -39434309 + MIR SINE MIR 142 241 -21 1032 252 179 16 chrX 123166301 123166436 -39433494 + LTR16A LTR ERVL 3 115 -335 3351 168 15 62 chrX 123166436 123167158 -39432772 + LTR8 LTR ERV1 4 691 0 1032 252 179 16 chrX 123167158 123167407 -39432523 + LTR16A LTR ERVL 115 450 0 205 435 32 12 chrX 123167603 123167851 -39432079 - L2 LINE L2 -216 3056 2804 777 205 19 6 chrX 123168318 123168479 -39431451 + MER20 DNA MER1_type 53 215 -4 1071 188 34 46 chrX 123168642 123168966 -39430964 + MER33 DNA MER1_type 5 324 0 397 296 74 27 chrX 123169469 123169661 -39430269 + MIR SINE MIR 7 205 -57 268 205 6 0 chrX 123170154 123170224 -39429706 + LTR28 LTR ERV1 1 55 -379 2180 170 32 3 chrX 123170233 123170610 -39429320 + MER61D LTR ERV1 114 501 0 605 266 32 50 chrX 123170720 123170938 -39428992 + MIR SINE MIR 48 261 -1 4036 134 37 15 chrX 123171626 123172362 -39427568 + L1PA16 LINE L1 5415 6166 0 2132 119 3 0 chrX 123172442 123172735 -39427195 + AluSx SINE Alu 13 306 -6 2095 179 94 24 chrX 123173215 123173682 -39426248 - MER61D LTR ERV1 -1 500 1 1642 136 0 71 chrX 123173682 123174005 -39425925 - MER61D-int LTR ERV1 0 5217 4918 2207 132 25 33 chrX 123174011 123174406 -39425524 - MER61D-int LTR ERV1 -1227 3990 3599 12259 204 56 14 chrX 123174413 123178485 -39421445 + L1PB1 LINE L1 6 3906 -2961 2393 50 0 0 chrX 123178485 123178808 -39421122 - AluY SINE Alu 0 323 1 12259 204 56 14 chrX 123178808 123180795 -39419135 + L1PB1 LINE L1 3906 6526 -341 534 70 0 0 chrX 123180795 123180866 -39419064 + (TA)n Simple_repeat Simple_repeat 2 72 0 12259 204 56 14 chrX 123180866 123181215 -39418715 + L1PB1 LINE L1 6526 6859 -8 23 0 0 0 chrX 123181215 123181238 -39418692 + AT_rich Low_complexity Low_complexity 1 23 0 9066 152 50 38 chrX 123181238 123184726 -39415204 - MER41-int LTR ERV1 -650 5296 609 3473 58 0 7 chrX 123184728 123185179 -39414751 - LTR7 LTR ERV1 -2 448 1 2389 79 45 13 chrX 123185179 123185557 -39414373 - HERVH LTR ERV1 0 7713 7324 1299 134 19 0 chrX 123185557 123185773 -39414157 - HERVH LTR ERV1 -1894 5819 5600 4171 138 1 1 chrX 123185774 123186436 -39413494 - HERVH LTR ERV1 -2564 5149 4488 3157 119 0 6 chrX 123186438 123186943 -39412987 - HERVH LTR ERV1 -3720 3993 3492 873 140 7 0 chrX 123186933 123187083 -39412847 - HERVH LTR ERV1 -4423 3290 3140 * 19434 92 13 13 chrX 123187062 123190057 -39409873 - HERVH LTR ERV1 -4718 2995 1 3465 60 0 7 chrX 123190059 123190510 -39409420 - LTR7 LTR ERV1 -2 448 1 4213 168 58 72 chrX 123190510 123191713 -39408217 - LTR7-int LTR ERV1 -300 4917 266 316 198 57 38 chrX 123191920 123192026 -39407904 - MER61D-int LTR ERV1 -6480 516 409 * 440 282 20 27 chrX 123192023 123192172 -39407758 - MER61D-int LTR ERV1 -5068 149 2 2205 173 108 2 chrX 123192172 123192600 -39407330 - MER61D LTR ERV1 0 501 29 869 280 128 24 chrX 123193445 123193938 -39405992 - MLT1H LTR MaLR 0 549 6 257 344 73 7 chrX 123193951 123194102 -39405828 - MIR SINE MIR -74 188 28 192 352 23 47 chrX 123195185 123195313 -39404617 + MIR SINE MIR 60 184 -78 2244 116 0 3 chrX 123195568 123195869 -39404061 - AluY SINE Alu -11 300 1 304 267 67 29 chrX 123195953 123196058 -39403872 + MIR SINE MIR 33 141 -67 249 108 0 0 chrX 123196743 123196780 -39403150 + (ATG)n Simple_repeat Simple_repeat 3 39 0 916 188 76 8 chrX 123197508 123197806 -39402124 + MLT1A1 LTR MaLR 1 353 -12 1905 174 45 31 chrX 123199409 123199758 -39400172 + MSTB LTR MaLR 1 358 -68 2430 68 3 3 chrX 123199758 123200069 -39399861 - AluY SINE Alu 0 311 1 1905 174 45 31 chrX 123200069 123200139 -39399791 + MSTB LTR MaLR 358 426 0 225 132 0 0 chrX 123200188 123200226 -39399704 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 722 311 87 25 chrX 123200580 123201097 -39398833 + L2 LINE L2 2586 3155 -158 432 280 57 81 chrX 123201107 123201413 -39398517 + L1MEd LINE L1 927 1303 -1187 2252 238 8 28 chrX 123201658 123202434 -39397496 - L1MCa LINE L1 -3012 3414 2655 * 3802 174 84 148 chrX 123202432 123204051 -39395879 - L1MCa LINE L1 -4777 1649 134 563 254 123 39 chrX 123204312 123204596 -39395334 + L1ME3 LINE L1 5373 5681 -481 274 106 0 0 chrX 123204599 123204646 -39395284 + L1MA3 LINE L1 6259 6305 0 775 125 0 0 chrX 123204648 123204760 -39395170 - L1P LINE L1 -1547 4599 4488 1423 56 22 0 chrX 123204762 123204941 -39394989 + L1PA7 LINE L1 5969 6151 -3 374 213 117 0 chrX 123204941 123205064 -39394866 + L1ME3 LINE L1 5682 5817 -345 486 304 0 0 chrX 123205068 123205203 -39394727 + L1ME3 LINE L1 5985 6119 -43 26 0 0 0 chrX 123205229 123205255 -39394675 + AT_rich Low_complexity Low_complexity 1 26 0 404 327 9 9 chrX 123205710 123205820 -39394110 - L2 LINE L2 0 3272 3163 1933 271 44 21 chrX 123206043 123206703 -39393227 - MER20B DNA MER1_type 0 783 109 1157 185 106 40 chrX 123208639 123208732 -39391198 + MER63 DNA MER1_type 683 768 -293 2317 141 35 35 chrX 123208732 123209164 -39390766 - MSTB1 LTR MaLR 0 432 1 1157 185 106 40 chrX 123209164 123209372 -39390558 + MER63 DNA MER1_type 768 1004 -57 4758 175 28 24 chrX 123209963 123210534 -39389396 - L1MA8 LINE L1 0 6312 5745 2035 110 0 3 chrX 123210534 123210837 -39389093 - AluSg SINE Alu 0 302 1 4758 175 28 24 chrX 123210837 123211790 -39388140 - L1MA8 LINE L1 -567 5745 4806 192 40 0 0 chrX 123211793 123211818 -39388112 + (TTTCC)n Simple_repeat Simple_repeat 1 25 0 893 235 0 39 chrX 123211818 123212052 -39387878 - AluJo SINE Alu -1 311 87 2394 154 46 11 chrX 123212052 123212513 -39387417 - L1MA8 LINE L1 -1329 4817 4341 8131 89 9 0 chrX 123212513 123213602 -39386328 + HERVL-A2 LTR ERVL 4556 5654 0 3158 113 7 0 chrX 123213602 123214044 -39385886 + MLT2A2 LTR ERVL 1 445 -8 6314 231 36 17 chrX 123214044 123215720 -39384210 - L1MA8 LINE L1 -1804 4342 2635 2195 132 18 0 chrX 123215720 123216054 -39383876 - MER61A LTR ERV1 -3 340 1 2324 111 35 0 chrX 123216054 123216397 -39383533 - MER61A-int LTR ERV1 0 5217 4863 * 15639 119 10 17 chrX 123216391 123219044 -39380886 - MER61A-int LTR ERV1 -393 6087 2610 9946 128 28 6 chrX 123219062 123220698 -39379232 + L1P LINE L1 2278 3950 -2196 5091 99 26 14 chrX 123220699 123221496 -39378434 - MER61A-int LTR ERV1 -2994 2223 1417 229 125 0 0 chrX 123221496 123221528 -39378402 - MER61A LTR ERV1 -234 109 78 315 71 0 0 chrX 123221528 123221570 -39378360 - MER61A-int LTR ERV1 -3856 1361 1320 * 2512 139 20 75 chrX 123221563 123222220 -39377710 - MER61A-int LTR ERV1 -4440 777 2 1895 151 42 9 chrX 123222221 123222553 -39377377 - MER61A LTR ERV1 0 343 1 455 254 0 51 chrX 123222553 123222691 -39377239 - L1MA8 LINE L1 -3505 2641 2511 409 323 46 8 chrX 123224343 123224473 -39375457 - L2 LINE L2 -1 3271 3137 241 214 18 0 chrX 123224499 123224555 -39375375 - MER103 DNA DNA -55 111 55 225 345 91 38 chrX 123225452 123225661 -39374269 + L2 LINE L2 2862 3081 -191 1838 148 65 34 chrX 123226514 123226865 -39373065 + THE1B LTR MaLR 1 362 -2 5897 123 55 49 chrX 123226867 123228193 -39371737 + THE1B-int LTR MaLR 1 1580 0 1888 152 39 33 chrX 123228193 123228555 -39371375 + THE1B LTR MaLR 1 364 0 2328 116 19 26 chrX 123228863 123229241 -39370689 - THE1C LTR MaLR 0 375 1 993 242 0 23 chrX 123229243 123229462 -39370468 + MER58A DNA MER1_type 2 215 -9 1940 131 27 0 chrX 123230494 123230791 -39369139 + AluSq SINE Alu 1 305 -8 5743 16 0 0 chrX 123230794 123231640 -39368290 + L1PA3 LINE L1 5070 5915 -240 22 0 0 0 chrX 123231689 123231711 -39368219 + AT_rich Low_complexity Low_complexity 1 22 0 358 238 62 0 chrX 123232124 123232204 -39367726 + L2 LINE L2 3229 3313 0 306 0 0 0 chrX 123235496 123235530 -39364400 + (TA)n Simple_repeat Simple_repeat 1 34 0 4539 251 83 30 chrX 123236344 123237316 -39362614 + L1M4 LINE L1 2310 3228 -2918 6787 65 18 1 chrX 123237316 123238722 -39361208 + L1PA8 LINE L1 4742 6164 -8 4539 251 83 30 chrX 123238722 123239225 -39360705 + L1M4 LINE L1 3228 3703 -2443 1244 278 16 14 chrX 123239225 123239589 -39360341 - MLT1A1 LTR MaLR 0 365 1 4539 251 83 30 chrX 123239589 123239997 -39359933 + L1M4 LINE L1 3703 4295 -1851 4722 32 7 2 chrX 123241509 123242073 -39357857 + L1PA3 LINE L1 5585 6151 -4 287 297 34 29 chrX 123242081 123242256 -39357674 - L1MC/D LINE L1 -2378 5430 5255 24 0 0 0 chrX 123242457 123242481 -39357449 + AT_rich Low_complexity Low_complexity 1 24 0 4076 165 7 7 chrX 123242813 123244203 -39355727 - L1PB2 LINE L1 -296 5855 4462 236 330 57 22 chrX 123244239 123244469 -39355461 - L1MC/D LINE L1 -1877 4269 4032 397 315 28 12 chrX 123244493 123244744 -39355186 - L1MC/D LINE L1 -2196 3950 3696 23 0 0 0 chrX 123245242 123245265 -39354665 + AT_rich Low_complexity Low_complexity 1 23 0 3219 189 18 6 chrX 123245280 123245952 -39353978 - L1MA8 LINE L1 -3 6288 5609 1448 254 11 5 chrX 123245972 123246350 -39353580 - L1MA6 LINE L1 -8 6292 5913 2964 126 38 11 chrX 123246350 123246819 -39353111 + MER41-int LTR ERV1 5078 5559 -387 903 154 0 21 chrX 123246819 123246962 -39352968 + THE1C LTR MaLR 1 140 -235 678 188 0 36 chrX 123246964 123247102 -39352828 - THE1C LTR MaLR -242 133 1 2691 179 17 22 chrX 123247102 123247721 -39352209 - L1MA8 LINE L1 -665 5626 5010 2630 153 9 2 chrX 123247721 123248146 -39351784 + MSTA LTR MaLR 1 428 0 2691 179 17 22 chrX 123248146 123248367 -39351563 - L1MA8 LINE L1 -1281 5010 4789 974 267 39 51 chrX 123248358 123248950 -39350980 - L1M2c LINE L1 -4456 3110 2267 * 15328 33 3 0 chrX 123248942 123250782 -39349148 - L1PA3 LINE L1 -1139 5007 3162 7418 33 2 0 chrX 123250782 123251931 -39347999 + L1PA3 LINE L1 5002 6152 -3 945 346 36 14 chrX 123251950 123252450 -39347480 - L1M2a LINE L1 -5051 2117 1607 434 271 25 25 chrX 123252897 123253015 -39346915 - L2 LINE L2 -5 3308 3191 604 320 84 38 chrX 123253016 123253235 -39346695 - HAL1b LINE L1 -469 879 672 245 200 38 48 chrX 123253235 123253340 -39346590 + Charlie5 DNA MER1_type 1962 2065 -547 604 320 84 38 chrX 123253340 123253494 -39346436 - HAL1b LINE L1 -676 672 380 8430 219 31 18 chrX 123253506 123255791 -39344139 - L1MC3 LINE L1 -217 7568 5106 5494 239 56 27 chrX 123255787 123256395 -39343535 - L1MB5 LINE L1 0 6174 5585 * 1861 112 9 75 chrX 123256395 123256716 -39343214 - AluSx SINE Alu -12 300 1 5494 239 56 27 chrX 123256716 123257514 -39342416 - L1MB5 LINE L1 -589 5585 4811 2314 146 3 11 chrX 123257514 123257890 -39342040 - THE1C LTR MaLR 0 375 3 9402 125 30 45 chrX 123257892 123259496 -39340434 - THE1C-int LTR MaLR 0 1580 2 2265 141 27 11 chrX 123259498 123259866 -39340064 - THE1C LTR MaLR -1 374 1 5494 239 56 27 chrX 123259866 123261214 -39338716 - L1MB5 LINE L1 -1363 4811 3343 2616 58 0 0 chrX 123262085 123262396 -39337534 - AluY SINE Alu 0 311 1 1201 232 38 59 chrX 123262757 123263183 -39336747 - L1ME1 LINE L1 -10 6156 5740 1385 219 84 19 chrX 123263200 123263570 -39336360 - THE1C LTR MaLR -2 394 1 1067 168 67 5 chrX 123263576 123263785 -39336145 - MLT-int LTR MaLR -6 1729 1508 1260 136 0 11 chrX 123263786 123264010 -39335920 + AluSg/x SINE Alu 100 321 0 4964 279 36 42 chrX 123264014 123265533 -39334397 - MSTD-int LTR MaLR -221 1514 4 1107 231 134 11 chrX 123265535 123265886 -39334044 - MSTD LTR MaLR -2 394 1 1543 235 35 14 chrX 123265894 123266323 -39333607 - L1ME1 LINE L1 -444 5722 5285 * 43737 42 1 7 chrX 123266321 123272510 -39327420 - L1PA4 LINE L1 0 6155 1 32 0 0 0 chrX 123273938 123273970 -39325960 + AT_rich Low_complexity Low_complexity 1 32 0 1893 165 32 50 chrX 123274674 123275110 -39324820 + L1MA7 LINE L1 5857 6284 -7 429 44 44 22 chrX 123275894 123275985 -39323945 + (TA)n Simple_repeat Simple_repeat 2 94 0 2400 122 25 3 chrX 123275985 123276345 -39323585 - THE1C LTR MaLR -7 368 1 9845 113 34 47 chrX 123276345 123276729 -39323201 - THE1C-int LTR MaLR 0 1580 1192 4525 134 72 0 chrX 123276729 123277467 -39322463 + LTR25 LTR ERV1 1 791 -3 9845 113 34 47 chrX 123277467 123278684 -39321246 - THE1C-int LTR MaLR -388 1192 1 2563 124 8 0 chrX 123278684 123279056 -39320874 - THE1C LTR MaLR 0 375 1 211 146 24 0 chrX 123279784 123279825 -39320105 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2577 270 84 66 chrX 123279841 123282486 -39317444 + L1M3c LINE L1 2 2279 -3933 2230 227 53 6 chrX 123282496 123283158 -39316772 + L1M3c LINE L1 3095 3787 -2423 2414 159 5 32 chrX 123283158 123283598 -39316332 - MSTA LTR MaLR 0 428 1 2318 174 62 29 chrX 123283598 123284085 -39315845 - MSTA-int LTR MaLR 0 1651 1149 385 174 0 0 chrX 123284079 123284148 -39315782 + MST-int LTR MaLR 1345 1413 -238 * 1251 171 13 4 chrX 123284143 123284377 -39315553 - MSTA-int LTR MaLR -1061 590 355 3600 216 33 15 chrX 123284387 123285421 -39314509 + L1M2 LINE L1 2055 3104 -3744 903 286 97 69 chrX 123285410 123286007 -39313923 - L1M4 LINE L1 -5579 963 350 * 256 222 28 28 chrX 123286124 123286196 -39313734 - L1M4 LINE L1 -6408 134 63 1491 200 7 0 chrX 123286278 123286588 -39313342 - L1MB7 LINE L1 0 6184 5873 312 243 81 40 chrX 123286609 123286757 -39313173 - L1MEd LINE L1 -5041 1078 925 1010 247 37 17 chrX 123286872 123287168 -39312762 - MER58B DNA MER1_type 0 341 40 1647 130 53 41 chrX 123287299 123287638 -39312292 - L1MA5 LINE L1 -5 7357 7015 26 30 0 0 chrX 123287638 123287671 -39312259 + AT_rich Low_complexity Low_complexity 1 33 0 2017 157 3 3 chrX 123287671 123288009 -39311921 - L1PB3 LINE L1 0 6154 5817 3318 167 41 16 chrX 123288016 123288823 -39311107 - L1MA5 LINE L1 -332 7030 6206 811 205 31 83 chrX 123288858 123289087 -39310843 - L1MA5 LINE L1 -6992 217 1 1887 198 65 50 chrX 123290556 123290677 -39309253 + MLT1D LTR MaLR 3 121 -384 2155 123 3 0 chrX 123290677 123290978 -39308952 - AluSx SINE Alu -10 302 1 1887 198 65 50 chrX 123290978 123291352 -39308578 + MLT1D LTR MaLR 121 505 0 348 312 88 24 chrX 123291552 123291757 -39308173 - Charlie8 DNA MER1_type -2143 274 57 581 165 0 63 chrX 123292081 123292208 -39307722 - L1MA9 LINE L1 -339 5829 5711 2490 162 10 23 chrX 123292208 123292681 -39307249 + L1MA9 LINE L1 5837 6312 0 447 329 61 13 chrX 123293705 123293933 -39305997 - MIR SINE MIR -4 258 20 262 259 12 47 chrX 123294964 123295049 -39304881 + HAL1 LINE L1 3 84 -2423 255 323 16 16 chrX 123295181 123295305 -39304625 + HAL1 LINE L1 272 395 -2112 459 244 162 35 chrX 123296221 123296536 -39303394 + HAL1 LINE L1 980 1334 -1173 520 368 47 23 chrX 123296753 123297442 -39302488 + ERVL LTR ERVL 3895 4583 -1071 9400 143 42 16 chrX 123297847 123300216 -39299714 + L1PA7 LINE L1 1 2670 -4192 288 0 0 0 chrX 123300216 123300248 -39299682 + (TTG)n Simple_repeat Simple_repeat 2 33 0 9400 143 42 16 chrX 123300248 123301280 -39298650 + L1PA7 LINE L1 2670 3673 -3189 4127 122 2 0 chrX 123301515 123302153 -39297777 + L1PA5 LINE L1 860 1498 -4648 * 23150 53 1 1 chrX 123302148 123305935 -39293995 + L1PA5 LINE L1 2364 6151 -3 6335 44 0 0 chrX 123305949 123306718 -39293212 + L1PA5 LINE L1 5386 6154 0 6791 90 16 8 chrX 123306894 123308692 -39291238 + L1PA7 LINE L1 5083 6855 -15 288 0 0 0 chrX 123308697 123308729 -39291201 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 866 43 0 17 chrX 123309175 123309291 -39290639 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 336 337 0 0 chrX 123309771 123309854 -39290076 + Tigger7 DNA MER2_type 2405 2487 0 1046 362 43 0 chrX 123309862 123310232 -39289698 - L1M4b LINE L1 -6007 852 467 296 376 0 24 chrX 123310273 123310398 -39289532 - L1M4b LINE L1 -6478 381 260 472 162 15 96 chrX 123310523 123310659 -39289271 - L1M4b LINE L1 -6685 174 50 197 318 54 39 chrX 123311148 123311253 -39288677 - L2 LINE L2 -514 2800 2691 557 54 0 0 chrX 123311253 123311327 -39288603 + L1PA5 LINE L1 6081 6154 0 197 318 54 39 chrX 123311327 123311350 -39288580 - L2 LINE L2 -623 2691 2670 548 264 6 30 chrX 123311387 123311554 -39288376 + MER58A DNA MER1_type 49 211 -13 312 289 0 0 chrX 123311693 123311797 -39288133 + T-rich Low_complexity Low_complexity 1 104 0 453 121 0 0 chrX 123311849 123311932 -39287998 - L1PB1 LINE L1 -1 6150 6068 399 21 0 0 chrX 123312282 123312330 -39287600 + (CA)n Simple_repeat Simple_repeat 1 48 0 44 35 0 0 chrX 123313233 123313291 -39286639 + AT_rich Low_complexity Low_complexity 1 58 0 271 274 22 22 chrX 123313333 123313512 -39286418 + (TA)n Simple_repeat Simple_repeat 2 180 0 6049 140 18 8 chrX 123313578 123314637 -39285293 - L1MA5A LINE L1 0 6297 5219 185 268 0 0 chrX 123315042 123315083 -39284847 - L2 LINE L2 -10 3303 3263 293 262 135 0 chrX 123315254 123315395 -39284535 - HAL1 LINE L1 -76 2431 2272 351 335 66 33 chrX 123315475 123315717 -39284213 - LTR16C LTR ERVL -83 408 159 354 324 46 50 chrX 123316054 123316313 -39283617 - ERVL LTR ERVL -414 5350 5093 22 35 0 0 chrX 123316718 123316747 -39283183 + AT_rich Low_complexity Low_complexity 1 29 0 1001 158 5 81 chrX 123317343 123317565 -39282365 + MER3 DNA MER1_type 1 205 -4 2379 114 14 3 chrX 123317927 123318287 -39281643 - L1PB1 LINE L1 -5 6146 5783 9318 203 14 11 chrX 123318295 123320377 -39279553 - L1 LINE L1 -1087 6478 4391 4551 152 61 5 chrX 123320375 123321666 -39278264 + L1PBa LINE L1 2143 3505 -3352 * 1866 157 57 29 chrX 123321666 123322016 -39277914 - THE1B LTR MaLR -4 360 1 7504 109 1 10 chrX 123322016 123323058 -39276872 - THE1B-int LTR MaLR 0 1580 548 1724 116 0 0 chrX 123323055 123323313 -39276617 - THE1B-int LTR MaLR -1320 260 3 * 2060 146 48 25 chrX 123323315 123323671 -39276259 - THE1B LTR MaLR 0 364 1 1395 234 5 3 chrX 123323671 123324060 -39275870 + L1 LINE L1 2782 3171 -2975 * 19730 173 20 3 chrX 123324059 123327512 -39272418 - L1 LINE L1 -4043 3522 13 242 267 23 35 chrX 123328003 123328089 -39271841 + L2 LINE L2 2998 3082 -190 190 373 0 13 chrX 123328155 123328230 -39271700 + L2 LINE L2 3238 3311 -2 2028 123 0 17 chrX 123328475 123328767 -39271163 + AluSq SINE Alu 1 287 -26 219 222 30 144 chrX 123328805 123328972 -39270958 - MIR SINE MIR -44 218 71 736 186 179 117 chrX 123330959 123331075 -39268855 - L1ME2 LINE L1 0 6164 6057 227 179 0 0 chrX 123331075 123331114 -39268816 - MER3 DNA MER1_type -160 49 11 736 186 179 117 chrX 123331114 123331365 -39268565 - L1ME2 LINE L1 -107 6057 5730 191 86 0 29 chrX 123331365 123331400 -39268530 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 3094 157 62 15 chrX 123331400 123332239 -39267691 - L1PA3 LINE L1 -19 6144 5241 625 283 9 19 chrX 123333998 123334210 -39265720 - L2 LINE L2 0 3313 3104 249 339 58 35 chrX 123335297 123335441 -39264489 - MIR3 SINE MIR -68 140 14 7122 32 0 0 chrX 123335854 123336694 -39263236 - L1PA3 LINE L1 0 6155 5316 228 67 0 0 chrX 123337064 123337094 -39262836 + (A)n Simple_repeat Simple_repeat 1 30 0 319 353 0 0 chrX 123337572 123337674 -39262256 - L2 LINE L2 -43 3270 3169 386 325 0 0 chrX 123337674 123337797 -39262133 + (TA)n Simple_repeat Simple_repeat 2 124 0 586 295 60 25 chrX 123337838 123338038 -39261892 - MIR SINE MIR 0 262 56 287 336 18 35 chrX 123338353 123338466 -39261464 + MIR SINE MIR 22 132 -76 181 370 79 24 chrX 123339453 123339580 -39260350 - MIR3 SINE MIR -71 137 4 25 31 0 0 chrX 123339902 123339934 -39259996 + AT_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chrX 123340069 123340113 -39259817 + AT_rich Low_complexity Low_complexity 1 44 0 2275 93 3 0 chrX 123340323 123340612 -39259318 - AluSg SINE Alu -15 295 6 37 39 0 0 chrX 123341104 123341155 -39258775 + AT_rich Low_complexity Low_complexity 1 51 0 684 146 18 1 chrX 123341272 123341396 -39258534 + L1P4 LINE L1 5669 5799 -322 20009 172 24 13 chrX 123342201 123345662 -39254268 + L1MA3 LINE L1 15 3528 -4037 396 0 0 0 chrX 123345662 123345706 -39254224 + (CA)n Simple_repeat Simple_repeat 1 44 0 20009 172 24 13 chrX 123345706 123346120 -39253810 + L1MA3 LINE L1 3528 3936 -3629 2414 96 6 28 chrX 123346123 123346486 -39253444 - THE1A LTR MaLR 0 355 1 2096 89 4 0 chrX 123346486 123346767 -39253163 - THE1A-int LTR MaLR 0 1580 1299 * 6263 173 47 33 chrX 123346765 123347978 -39251952 + L1MA3 LINE L1 5108 6302 -1422 3419 20 5 0 chrX 123347978 123348378 -39251552 + L1PA3 LINE L1 5754 6155 0 6263 173 47 33 chrX 123348378 123349737 -39250193 + L1MA3 LINE L1 6302 7724 0 25 31 0 0 chrX 123349737 123349769 -39250161 + AT_rich Low_complexity Low_complexity 1 32 0 498 340 174 17 chrX 123350477 123351116 -39248814 + L2 LINE L2 2128 2866 -448 397 289 109 0 chrX 123351502 123351630 -39248300 + MIR SINE MIR 99 240 -22 187 318 85 39 chrX 123351771 123351900 -39248030 - L2 LINE L2 -6 3307 3173 300 326 0 11 chrX 123352913 123353002 -39246928 - MIR SINE MIR -135 127 40 29927 126 8 60 chrX 123353196 123356254 -39243676 - L1PA7 LINE L1 -8 6146 3609 2348 93 0 16 chrX 123356254 123356564 -39243366 - AluY SINE Alu -5 306 2 29927 126 8 60 chrX 123356564 123359989 -39239941 - L1PA7 LINE L1 -2545 3609 7 229 305 133 16 chrX 123360049 123360177 -39239753 - MIR SINE MIR -13 249 107 31 44 0 0 chrX 123360309 123360354 -39239576 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chrX 123360448 123360483 -39239447 + AT_rich Low_complexity Low_complexity 1 35 0 447 282 71 23 chrX 123360667 123361021 -39238909 - MLT1H LTR MaLR -18 531 103 227 367 0 0 chrX 123362059 123362157 -39237773 - MLT1-int LTR MaLR -832 539 442 524 243 34 89 chrX 123362410 123362588 -39237342 - MLT1H LTR MaLR 0 542 382 242 336 27 36 chrX 123362614 123362724 -39237206 - MLT1H LTR MaLR -246 303 195 1970 189 68 2 chrX 123362964 123363361 -39236569 + MSTB LTR MaLR 4 426 0 641 209 22 0 chrX 123363505 123363639 -39236291 - Tigger4(Zombi) DNA MER2_type 0 2731 2595 312 313 59 114 chrX 123363723 123363995 -39235935 + L3 LINE CR1 1320 1576 -1 188 284 221 32 chrX 123365022 123365059 -39234871 - MIR SINE MIR -60 148 119 352 306 0 15 chrX 123365059 123365193 -39234737 - MER94 DNA DNA 0 134 3 188 284 221 32 chrX 123365193 123365250 -39234680 - MIR SINE MIR -89 119 36 22 35 0 0 chrX 123365839 123365868 -39234062 + AT_rich Low_complexity Low_complexity 1 29 0 249 290 151 0 chrX 123365873 123365966 -39233964 + L2 LINE L2 3206 3312 -1 26 0 0 0 chrX 123366522 123366548 -39233382 + AT_rich Low_complexity Low_complexity 1 26 0 249 83 0 0 chrX 123366802 123366838 -39233092 + (CA)n Simple_repeat Simple_repeat 2 37 0 405 298 67 53 chrX 123367196 123367488 -39232442 + L1MEd LINE L1 786 1085 -5044 410 248 108 9 chrX 123367881 123368103 -39231827 + L1MEd LINE L1 1174 1417 -4893 310 308 62 28 chrX 123368978 123369419 -39230511 + L1MCc LINE L1 1233 1909 -4932 328 289 10 0 chrX 123369428 123369525 -39230405 + L1MCc LINE L1 1812 1909 -4930 208 237 0 0 chrX 123369565 123369603 -39230327 + (CA)n Simple_repeat Simple_repeat 1 38 0 1109 269 92 31 chrX 123369606 123370803 -39229127 + L1MCc LINE L1 2134 3383 -3558 708 286 69 86 chrX 123370839 123371036 -39228894 - LTR16C LTR ERVL -2 489 301 270 0 0 0 chrX 123371036 123371066 -39228864 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 708 286 69 86 chrX 123371066 123371273 -39228657 - LTR16C LTR ERVL -190 301 92 705 284 24 4 chrX 123371361 123371611 -39228319 + L1MCc LINE L1 3430 3684 -3257 303 333 24 24 chrX 123371765 123371888 -39228042 - L2 LINE L2 -215 3057 2935 5628 227 37 29 chrX 123373117 123375445 -39224485 + L1PBa LINE L1 3 2311 -4551 317 62 21 0 chrX 123375445 123375493 -39224437 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 5628 227 37 29 chrX 123375493 123375616 -39224314 + L1PBa LINE L1 2311 2432 -4430 2277 143 64 7 chrX 123375616 123376021 -39223909 - MSTA LTR MaLR 0 428 1 5628 227 37 29 chrX 123376021 123377610 -39222320 + L1PBa LINE L1 2432 3136 -3726 25334 149 15 18 chrX 123377615 123384062 -39215868 + L1PA8 LINE L1 3 6487 0 11624 211 16 20 chrX 123384062 123384936 -39214994 + L1 LINE L1 3125 4000 -2862 1679 180 6 6 chrX 123384936 123385247 -39214683 + AluJb SINE Alu 1 311 -1 11624 211 16 20 chrX 123385247 123387305 -39212625 + L1 LINE L1 4000 6047 -815 6129 131 2 31 chrX 123387303 123388728 -39211202 + L1PB1 LINE L1 4767 6150 -1 * 4601 165 9 13 chrX 123388718 123389586 -39210344 + L1PB2 LINE L1 5285 6149 -2 * 22 0 0 0 chrX 123389586 123389608 -39210322 + AT_rich Low_complexity Low_complexity 1 22 0 325 308 13 88 chrX 123389707 123389866 -39210064 - MIR SINE MIR -112 150 4 495 255 240 5 chrX 123389923 123390131 -39209799 - MIR SINE MIR -3 259 3 825 293 9 0 chrX 123391025 123391247 -39208683 + MER58A DNA MER1_type 1 224 0 7111 53 6 0 chrX 123391415 123392723 -39207207 + L1PA7 LINE L1 4839 6151 -3 301 338 119 42 chrX 123393023 123393334 -39206596 - L2 LINE L2 -1 3312 2978 331 274 91 29 chrX 123395605 123395780 -39204150 - MIR SINE MIR -6 256 71 399 293 78 0 chrX 123396626 123396742 -39203188 + MIR SINE MIR 31 155 -107 321 297 134 35 chrX 123397080 123397490 -39202440 + L1MC4 LINE L1 6499 6875 -933 26 0 0 0 chrX 123397536 123397562 -39202368 + AT_rich Low_complexity Low_complexity 1 26 0 3873 176 4 19 chrX 123398030 123399135 -39200795 + L1PB4 LINE L1 4528 5623 -533 2686 182 13 22 chrX 123399204 123399738 -39200192 + L1PB4 LINE L1 5624 6152 -4 249 213 213 0 chrX 123399762 123399856 -39200074 + L1MB4 LINE L1 816 929 -5717 3498 208 79 29 chrX 123399964 123401110 -39198820 + L1MB4 LINE L1 816 2006 -4640 4326 189 27 6 chrX 123401119 123401999 -39197931 + L1MB4 LINE L1 5779 6677 -1 505 72 24 0 chrX 123402004 123402087 -39197843 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 957 207 0 0 chrX 123403194 123403358 -39196572 + FAM SINE Alu 1 164 -11 21 71 0 0 chrX 123404526 123404568 -39195362 + AT_rich Low_complexity Low_complexity 1 42 0 621 270 25 15 chrX 123404573 123404777 -39195153 - L1ME1 LINE L1 -9 6157 5952 225 229 71 0 chrX 123404814 123404884 -39195046 - MER53 DNA DNA -92 97 23 * 307 192 68 0 chrX 123404822 123404895 -39195035 + MER53 DNA DNA 111 188 -1 1483 257 59 25 chrX 123404901 123405509 -39194421 - L1M4 LINE L1 -1028 5118 4490 1640 242 105 8 chrX 123405556 123406167 -39193763 + L1 LINE L1 3302 3971 -2175 386 163 12 58 chrX 123406165 123406251 -39193679 + L1MB4 LINE L1 6059 6140 -40 * 893 236 93 56 chrX 123406311 123406772 -39193158 + L1MC5 LINE L1 6928 7405 -556 22 0 0 0 chrX 123406838 123406860 -39193070 + AT_rich Low_complexity Low_complexity 1 22 0 245 271 52 21 chrX 123407151 123407247 -39192683 + MIR SINE MIR 130 228 -34 5956 139 70 34 chrX 123407553 123408029 -39191901 - Tigger3b DNA MER2_type -1797 1231 774 1647 191 3 0 chrX 123408029 123408317 -39191613 - AluJb SINE Alu -23 289 1 5956 139 70 34 chrX 123408317 123408727 -39191203 - Tigger3b DNA MER2_type -2254 774 289 1798 148 7 34 chrX 123408727 123409025 -39190905 + AluSx SINE Alu 1 290 -22 5956 139 70 34 chrX 123409025 123409325 -39190605 - Tigger3b DNA MER2_type -2739 289 1 2502 108 16 0 chrX 123409502 123409871 -39190059 - L1PB1 LINE L1 0 6151 5777 509 225 101 0 chrX 123411627 123411765 -39188165 + MIR SINE MIR 92 243 -19 700 211 0 0 chrX 123412643 123412771 -39187159 + FLAM_A SINE Alu 1 128 -5 225 299 25 10 chrX 123412805 123412903 -39187027 + MIR SINE MIR 17 116 -103 258 305 53 32 chrX 123412911 123413006 -39186924 - L2 LINE L2 -8 3264 3168 270 0 0 0 chrX 123413504 123413534 -39186396 + (A)n Simple_repeat Simple_repeat 1 30 0 471 148 10 59 chrX 123413862 123413963 -39185967 + MIR SINE MIR 123 218 -44 185 176 22 22 chrX 123415234 123415325 -39184605 + (TA)n Simple_repeat Simple_repeat 1 91 0 359 226 78 70 chrX 123415458 123415573 -39184357 - L2 LINE L2 -6 3266 3151 290 326 30 15 chrX 123415738 123415870 -39184060 + L3 LINE CR1 1348 1481 -96 28 0 0 0 chrX 123415912 123415940 -39183990 + AT_rich Low_complexity Low_complexity 1 28 0 25427 141 9 14 chrX 123416230 123419817 -39180113 + L1PA8A LINE L1 1 3602 -2844 2185 95 10 3 chrX 123419817 123420113 -39179817 + AluY SINE Alu 1 298 -13 25427 141 9 14 chrX 123420113 123422923 -39177007 + L1PA8A LINE L1 3602 6425 -21 189 0 0 0 chrX 123422923 123422944 -39176986 + (T)n Simple_repeat Simple_repeat 1 21 0 186 103 0 0 chrX 123422955 123422984 -39176946 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 289 351 133 22 chrX 123423490 123424069 -39175861 + L2 LINE L2 2115 2757 -557 2173 131 0 6 chrX 123425784 123426097 -39173833 - AluSx SINE Alu -1 311 1 23 68 0 0 chrX 123426723 123426767 -39173163 + AT_rich Low_complexity Low_complexity 1 44 0 305 307 72 48 chrX 123427381 123427547 -39172383 + MIR3 SINE MIR 38 207 -1 5124 125 49 16 chrX 123428567 123429127 -39170803 - L1PA15 LINE L1 -4 6161 5621 288 0 0 0 chrX 123429127 123429159 -39170771 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1776 172 0 0 chrX 123429163 123429442 -39170488 - AluJb SINE Alu -32 280 2 5124 125 49 16 chrX 123429442 123430165 -39169765 - L1PA15 LINE L1 -546 5619 4878 5083 198 24 6 chrX 123430943 123432024 -39167906 + L1MA3 LINE L1 3138 4238 -1908 * 6167 148 12 17 chrX 123432017 123433410 -39166520 + L1MA3 LINE L1 4918 6303 -2 24 53 0 0 chrX 123433944 123433982 -39165948 + AT_rich Low_complexity Low_complexity 1 38 0 6250 95 31 3 chrX 123434395 123435481 -39164449 - L1PA14 LINE L1 -4 6157 5059 248 259 28 93 chrX 123435883 123435991 -39163939 - L2 LINE L2 -36 3236 3136 2168 124 45 25 chrX 123436351 123436706 -39163224 - THE1B LTR MaLR -2 362 1 853 290 69 47 chrX 123436856 123437308 -39162622 + L2 LINE L2 1710 2171 -1143 995 157 14 28 chrX 123437324 123437541 -39162389 - L1MA8 LINE L1 -3 6288 6075 707 87 48 0 chrX 123437544 123437648 -39162282 + L1M2 LINE L1 5686 5794 -497 186 233 0 0 chrX 123437648 123437708 -39162222 + (TA)n Simple_repeat Simple_repeat 2 61 0 6303 190 17 12 chrX 123437709 123439821 -39160109 - L1MA8 LINE L1 -201 6090 3966 1808 188 70 25 chrX 123439821 123440355 -39159575 - MLT2A2 LTR ERVL 0 554 1 2145 128 9 0 chrX 123440355 123440691 -39159239 - HERVL-A2 LTR ERVL 0 5654 5316 3119 131 17 9 chrX 123440791 123441326 -39158604 + L1MA1 LINE L1 5764 6302 0 1822 301 51 16 chrX 123441398 123442610 -39157320 + L1MEc LINE L1 1325 2539 -3676 339 49 0 0 chrX 123443191 123443232 -39156698 + LTR23 LTR ERV1 321 361 -76 28 0 0 0 chrX 123443297 123443325 -39156605 + AT_rich Low_complexity Low_complexity 1 28 0 1456 157 112 8 chrX 123443338 123443606 -39156324 - AluSg SINE Alu -14 296 1 1136 188 29 47 chrX 123443625 123443901 -39156029 + MER54A LTR ERVL 3 273 -628 519 155 7 168 chrX 123443934 123444089 -39155841 + MER54A LTR ERVL 269 398 -503 2184 101 19 7 chrX 123444089 123444397 -39155533 + AluSp SINE Alu 1 312 -1 206 143 29 0 chrX 123446385 123446420 -39153510 + CT-rich Low_complexity Low_complexity 4 39 0 289 351 133 22 chrX 123446939 123447518 -39152412 - L2 LINE L2 -557 2757 2115 186 103 0 0 chrX 123448025 123448054 -39151876 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chrX 123448065 123448086 -39151844 + (A)n Simple_repeat Simple_repeat 1 21 0 16165 107 6 4 chrX 123448086 123451097 -39148833 - L1PA8A LINE L1 -21 6110 3084 2348 93 0 16 chrX 123451097 123451407 -39148523 - AluY SINE Alu -5 306 2 16165 107 6 4 chrX 123451407 123451938 -39147992 - L1PA8A LINE L1 -3047 3084 2556 741 252 43 35 chrX 123452038 123452292 -39147638 + LTR52-int LTR ERVL 59 314 -3242 233 29 0 29 chrX 123452292 123452327 -39147603 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 267 259 82 44 chrX 123452990 123453148 -39146782 + LTR52-int LTR ERVL 506 669 -2887 664 194 46 93 chrX 123453149 123453365 -39146565 + LTR52-int LTR ERVL 781 986 -2570 3860 191 22 27 chrX 123453663 123455109 -39144821 - L1MA8 LINE L1 -203 7048 5607 1413 155 72 4 chrX 123455438 123455715 -39144215 - MLT2A2 LTR ERVL -157 296 1 7948 112 12 1 chrX 123455715 123456849 -39143081 - HERVL-A2 LTR ERVL 0 5654 4508 14448 112 19 5 chrX 123456973 123459041 -39140889 - HERVL LTR ERVL -314 5340 3244 * 19741 117 8 31 chrX 123459039 123459808 -39140122 - HERVL LTR ERVL -2612 3042 2257 243 224 0 0 chrX 123459808 123459875 -39140055 - L1MA8 LINE L1 -1678 5428 5362 19741 117 8 31 chrX 123459875 123462022 -39137908 - HERVL LTR ERVL -3397 2257 129 29 70 0 0 chrX 123462045 123462102 -39137828 + AT_rich Low_complexity Low_complexity 1 57 0 912 111 0 0 chrX 123462106 123462241 -39137689 - HERVL-A2 LTR ERVL -5519 135 1 1909 157 78 29 chrX 123462241 123462773 -39137157 - MLT2A2 LTR ERVL 0 554 1 5459 228 47 18 chrX 123462774 123464380 -39135550 - L1MA8 LINE L1 -2177 4929 3277 490 247 11 27 chrX 123464465 123464651 -39135279 - L1MA8 LINE L1 -3821 3285 3103 375 263 7 20 chrX 123464654 123464806 -39135124 - L1MA8 LINE L1 -4069 3037 2888 7454 247 69 40 chrX 123464835 123465382 -39134548 - L1MA8 LINE L1 -4516 2521 1992 1967 167 15 0 chrX 123465382 123465717 -39134213 + MER2 DNA MER2_type 5 344 0 7454 247 69 40 chrX 123465717 123467825 -39132105 - L1MA8 LINE L1 -5045 1992 1 332 339 83 5 chrX 123467832 123468024 -39131906 + L2 LINE L2 2161 2367 -947 501 251 70 84 chrX 123468216 123468329 -39131601 - L1MDb LINE L1 -5197 873 760 2351 103 0 0 chrX 123468329 123468639 -39131291 - AluSx SINE Alu -2 310 1 501 251 70 84 chrX 123468639 123468953 -39130977 - L1MDb LINE L1 -5310 760 466 225 307 59 0 chrX 123469081 123469182 -39130748 - L1MDb LINE L1 -5644 426 320 243 326 88 34 chrX 123469684 123469831 -39130099 + L2 LINE L2 3158 3312 -1 300 258 67 39 chrX 123471044 123471324 -39128606 + L1MC4 LINE L1 6957 7241 -737 261 275 80 58 chrX 123471361 123471754 -39128176 + L1MC5 LINE L1 7261 7576 -385 358 329 86 7 chrX 123471820 123471972 -39127958 + LTR33 LTR ERVL 2 165 -356 375 284 18 0 chrX 123472027 123472136 -39127794 - MER81 DNA DNA 0 114 4 1557 143 3 80 chrX 123472160 123472516 -39127414 - MER4A LTR ERV1 -17 647 261 591 89 11 11 chrX 123472522 123472612 -39127318 - MER4A LTR ERV1 -572 92 3 15572 108 64 21 chrX 123472622 123474714 -39125216 - MER4A-int LTR ERV1 -2 6596 4366 4536 131 6 13 chrX 123474714 123475410 -39124520 + LTR8 LTR ERV1 1 691 0 15572 108 64 21 chrX 123475410 123475964 -39123966 - MER4A-int LTR ERV1 -2232 4366 3837 5047 110 209 135 chrX 123475963 123477750 -39122180 - MER4A-int LTR ERV1 -2917 3681 1764 * 1492 134 46 0 chrX 123477754 123478014 -39121916 - MER4A-int LTR ERV1 -5425 1184 924 3872 157 10 5 chrX 123478049 123478667 -39121263 - MER4A-int LTR ERV1 -5949 809 189 1313 263 64 11 chrX 123478666 123479027 -39120903 - MER4A-int LTR ERV1 -4107 2224 1845 * 299 107 0 174 chrX 123479074 123479195 -39120735 - MER4A-int LTR ERV1 -5760 838 739 1644 146 85 91 chrX 123479255 123479743 -39120187 - MER4A-int LTR ERV1 -6044 554 2 2231 113 73 87 chrX 123480165 123480656 -39119274 - MER4A-int LTR ERV1 -6044 554 3 1573 122 22 90 chrX 123480661 123481030 -39118900 - MER4A LTR ERV1 0 664 261 625 133 0 10 chrX 123481031 123481129 -39118801 - MER4A LTR ERV1 -567 97 1 238 380 45 0 chrX 123481156 123481335 -39118595 + LTR33 LTR ERVL 327 513 -8 360 291 72 20 chrX 123481367 123481618 -39118312 + L1MC5 LINE L1 7668 7931 -30 248 284 15 0 chrX 123481876 123481943 -39117987 - MLT1K LTR MaLR -342 246 179 615 281 69 50 chrX 123482024 123482601 -39117329 - L1ME4a LINE L1 -10 6111 5524 2610 277 63 30 chrX 123483037 123483600 -39116330 + L1MEc LINE L1 685 1228 -4987 5397 128 16 5 chrX 123483600 123484475 -39115455 + L1MA1 LINE L1 5418 6302 0 2610 277 63 30 chrX 123484475 123486010 -39113920 + L1MEc LINE L1 1228 2807 -3408 417 39 0 0 chrX 123486010 123486061 -39113869 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 3849 224 42 8 chrX 123486061 123487973 -39111957 - L1MB1 LINE L1 -4 5988 4014 2094 183 38 21 chrX 123487981 123488402 -39111528 + MSTA LTR MaLR 1 428 0 8135 198 13 27 chrX 123488402 123490057 -39109873 + MSTA-int LTR MaLR 1 1632 -19 1972 204 60 0 chrX 123490082 123490484 -39109446 + MSTA LTR MaLR 3 428 0 5259 267 70 32 chrX 123490484 123493549 -39106381 - L1MB1 LINE L1 -1960 4010 723 976 239 22 4 chrX 123493551 123493781 -39106149 - L1MB1 LINE L1 -4970 921 688 1602 307 20 31 chrX 123493786 123494532 -39105398 - L1MB1 LINE L1 -5379 512 2 274 220 50 10 chrX 123494549 123494649 -39105281 + L1M4 LINE L1 2872 2975 -3171 1102 209 44 57 chrX 123494706 123495002 -39104928 - AluJo SINE Alu -10 302 11 2069 260 74 71 chrX 123495028 123496743 -39103187 + L1M4 LINE L1 3074 4794 -1352 971 272 10 60 chrX 123496881 123497182 -39102748 + L1M3a LINE L1 4 289 -5666 1592 186 45 3 chrX 123497189 123497544 -39102386 + L1 LINE L1 4306 4675 -1471 1221 232 25 28 chrX 123497556 123497883 -39102047 + L1 LINE L1 4872 5197 -949 3487 97 67 11 chrX 123497900 123498455 -39101475 - MER11A LTR ERVK 0 1266 681 238 327 0 0 chrX 123498942 123499046 -39100884 + L1M4 LINE L1 4844 4947 -1199 768 179 69 41 chrX 123499145 123499391 -39100539 + L1M4 LINE L1 4980 5232 -914 385 349 7 20 chrX 123500471 123500620 -39099310 + MIR3 SINE MIR 52 198 -10 22 35 0 0 chrX 123501116 123501145 -39098785 + AT_rich Low_complexity Low_complexity 1 29 0 1682 153 25 76 chrX 123501940 123502292 -39097638 + THE1C LTR MaLR 1 333 -42 2182 80 6 42 chrX 123502292 123502603 -39097327 - AluSc SINE Alu -9 300 1 1682 153 25 76 chrX 123502603 123502643 -39097287 + THE1C LTR MaLR 333 373 -2 9522 139 10 32 chrX 123502645 123504261 -39095669 + THE1C-int LTR MaLR 1 1580 0 1799 150 31 60 chrX 123504261 123504647 -39095283 + THE1C LTR MaLR 1 375 0 3587 179 52 15 chrX 123504688 123505218 -39094712 - L1PA14 LINE L1 0 6161 5652 1376 201 61 28 chrX 123505218 123505581 -39094349 - THE1C LTR MaLR 0 375 1 8712 144 46 17 chrX 123505581 123507114 -39092816 - THE1C-int LTR MaLR 0 1580 3 1716 180 58 19 chrX 123507116 123507477 -39092453 - THE1C LTR MaLR 0 375 1 3587 179 52 15 chrX 123507477 123507673 -39092257 - L1PA14 LINE L1 -509 5652 5404 2150 113 0 13 chrX 123507682 123507993 -39091937 - AluSc SINE Alu -2 307 1 3529 93 12 0 chrX 123508006 123508509 -39091421 - L1PA13 LINE L1 -6 6157 5649 16241 213 28 10 chrX 123508527 123510201 -39089729 - L1PA14 LINE L1 -755 5391 3749 1968 114 0 7 chrX 123510201 123510482 -39089448 - AluSx SINE Alu 0 312 34 16241 213 28 10 chrX 123510482 123512539 -39087391 - L1PA14 LINE L1 -2397 3749 1591 769 222 34 11 chrX 123513161 123513337 -39086593 - MER58A DNA MER1_type 0 224 45 232 205 0 108 chrX 123513837 123513920 -39086010 + MIR SINE MIR 133 206 -56 238 192 19 164 chrX 123515773 123515877 -39084053 - L2 LINE L2 0 3272 3184 26 0 0 0 chrX 123517027 123517053 -39082877 + AT_rich Low_complexity Low_complexity 1 26 0 689 195 0 92 chrX 123518232 123518363 -39081567 + MER20 DNA MER1_type 62 175 -44 2213 120 0 0 chrX 123518363 123518663 -39081267 + AluSx SINE Alu 1 300 -12 689 195 0 92 chrX 123518663 123518705 -39081225 + MER20 DNA MER1_type 175 219 0 397 332 199 5 chrX 123518801 123519012 -39080918 + MIR SINE MIR 1 252 -10 376 267 76 0 chrX 123521962 123522067 -39077863 - MER63C DNA MER1_type 0 931 819 4614 242 84 33 chrX 123522120 123524941 -39074989 + L1MB4 LINE L1 58 3047 -3597 376 305 8 8 chrX 123524991 123525122 -39074808 + L1MB4 LINE L1 4728 4858 -1786 745 271 26 0 chrX 123525176 123525405 -39074525 + L1MB4 LINE L1 5131 5365 -1279 713 228 4 4 chrX 123525405 123525582 -39074348 + MER4E LTR ERV1 1 284 -615 * 1636 220 14 8 chrX 123525579 123525934 -39073996 + MER4D LTR ERV1 547 903 0 2026 211 44 66 chrX 123525934 123526911 -39073019 + L1MB4 LINE L1 5362 6332 -346 2323 175 2 12 chrX 123526919 123527319 -39072611 - MER61B LTR ERV1 -29 396 1 27332 112 23 14 chrX 123527319 123531542 -39068388 - MER61B-int LTR ERV1 0 5217 958 3158 189 70 60 chrX 123531542 123532374 -39067556 - MER61B-int LTR ERV1 -4377 840 1 2470 155 18 13 chrX 123532386 123532780 -39067150 - MER61B LTR ERV1 -29 396 1 1158 209 40 37 chrX 123532785 123533110 -39066820 + L1MB4 LINE L1 6335 6660 -18 1879 277 30 40 chrX 123533236 123533977 -39065953 + L1ME LINE L1 3 735 -5310 398 250 9 0 chrX 123533966 123534074 -39065856 + L1ME LINE L1 2885 2993 -3571 * 2390 262 39 7 chrX 123534064 123534880 -39065050 + L1ME LINE L1 4961 5802 -762 898 192 70 0 chrX 123534867 123535081 -39064849 + L1MC3 LINE L1 7557 7785 0 * 2171 224 102 26 chrX 123535223 123535906 -39064024 - MER63C DNA MER1_type -144 786 52 434 92 35 11 chrX 123535957 123536044 -39063886 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 504 175 10 48 chrX 123536747 123536850 -39063080 + MER5A DNA MER1_type 11 109 -80 865 110 0 0 chrX 123536853 123536980 -39062950 - L1PA13 LINE L1 -3 6160 6034 916 121 6 42 chrX 123536980 123537145 -39062785 + L1PA13 LINE L1 5860 6018 -145 594 241 206 23 chrX 123537642 123537910 -39062020 - L1ME3A LINE L1 -189 5932 5636 312 350 8 0 chrX 123537908 123538031 -39061899 + L1ME LINE L1 5913 6036 -544 * 2081 107 0 25 chrX 123538032 123538349 -39061581 + AluY SINE Alu 1 309 -2 334 270 74 53 chrX 123538488 123538704 -39061226 + LTR16B LTR ERVL 225 462 -2 958 208 71 111 chrX 123538945 123539325 -39060605 - MLT1A1 LTR MaLR 0 365 1 68 0 0 0 chrX 123539342 123539410 -39060520 + AT_rich Low_complexity Low_complexity 1 68 0 218 213 0 0 chrX 123539430 123539477 -39060453 + (TA)n Simple_repeat Simple_repeat 1 47 0 1289 249 125 21 chrX 123539489 123539970 -39059960 - L1ME3A LINE L1 -24 6146 5616 2125 177 8 54 chrX 123540040 123540494 -39059436 - Tigger2a DNA MER2_type 0 434 4 306 0 0 0 chrX 123540496 123540530 -39059400 + (TG)n Simple_repeat Simple_repeat 2 35 0 3244 99 23 0 chrX 123540568 123541011 -39058919 - MLT2A2 LTR ERVL 0 453 1 987 138 0 13 chrX 123541087 123541246 -39058684 + Tigger1 DNA MER2_type 1 157 -2261 * 1052 128 8 116 chrX 123541235 123541477 -39058453 + Tigger1 DNA MER2_type 2202 2417 -1 391 309 102 18 chrX 123541477 123542111 -39057819 - L1M4 LINE L1 -1808 4338 3596 32 26 0 0 chrX 123542278 123542317 -39057613 + AT_rich Low_complexity Low_complexity 1 39 0 311 268 90 99 chrX 123543119 123543700 -39056230 - HAL1b LINE L1 -577 771 195 1373 228 31 17 chrX 123543700 123544060 -39055870 - MLT1A1 LTR MaLR 0 365 1 311 268 90 99 chrX 123544060 123544177 -39055753 - HAL1b LINE L1 -1153 195 79 247 189 14 27 chrX 123544878 123544952 -39054978 + (TA)n Simple_repeat Simple_repeat 2 74 0 22 35 0 0 chrX 123545371 123545400 -39054530 + AT_rich Low_complexity Low_complexity 1 29 0 2256 109 23 9 chrX 123545870 123546220 -39053710 - THE1A LTR MaLR 0 355 1 29 0 0 0 chrX 123547322 123547351 -39052579 + AT_rich Low_complexity Low_complexity 1 29 0 198 384 0 41 chrX 123547425 123547498 -39052432 - L2 LINE L2 -62 3210 3141 592 249 168 13 chrX 123548538 123548847 -39051083 - Zaphod DNA AcHobo -76 3955 3599 2164 234 108 23 chrX 123548847 123549723 -39050207 - Zaphod DNA AcHobo -3040 991 14 2908 190 57 25 chrX 123550538 123551240 -39048690 + L1MD1 LINE L1 5513 6236 -6 2022 103 11 0 chrX 123551255 123551528 -39048402 + AluSx SINE Alu 1 276 -36 186 43 0 0 chrX 123551538 123551561 -39048369 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 524 305 65 24 chrX 123551608 123551854 -39048076 + HAL1 LINE L1 1087 1342 -1165 201 39 0 0 chrX 123552103 123552129 -39047801 + (T)n Simple_repeat Simple_repeat 1 26 0 1516 199 32 23 chrX 123552131 123552473 -39047457 - MSTD LTR MaLR -51 345 1 333 175 25 12 chrX 123552473 123552553 -39047377 - MSTD-int LTR MaLR 0 1735 1655 9794 25 0 0 chrX 123552672 123554601 -39045329 - L1PA3 LINE L1 0 6155 4226 25100 35 1 153 chrX 123554714 123559140 -39040790 - L1PA3 LINE L1 -2383 3763 9 559 107 0 0 chrX 123559837 123559912 -39040018 - AluS SINE Alu -238 75 1 3515 205 6 64 chrX 123559912 123560853 -39039077 + L1P3 LINE L1 740 1626 -4835 3730 110 65 59 chrX 123560853 123561926 -39038004 + MER11A LTR ERVK 1 1071 0 21446 144 13 16 chrX 123561926 123562966 -39036964 + L1P3 LINE L1 1612 2654 -3807 2505 84 0 0 chrX 123562966 123563277 -39036653 - AluY SINE Alu 0 311 1 21446 144 13 16 chrX 123563277 123566185 -39033745 + L1P3 LINE L1 2654 5548 -913 1086 77 7 0 chrX 123566348 123566503 -39033427 - L1PB1 LINE L1 -213 5938 5783 378 0 0 0 chrX 123566509 123566551 -39033379 + (TA)n Simple_repeat Simple_repeat 2 43 0 6397 74 10 39 chrX 123566555 123568089 -39031841 - L1PA8 LINE L1 -2 6170 4631 508 0 0 0 chrX 123568094 123568153 -39031777 - L1PA4 LINE L1 -8 6147 6089 10341 48 8 3 chrX 123568153 123569537 -39030393 - L1PA8 LINE L1 -1515 4631 3241 4366 183 4 23 chrX 123569637 123570659 -39029271 + MER52A LTR ERV1 822 1753 -2 660 340 44 42 chrX 123570675 123571225 -39028705 - L1M4 LINE L1 -1121 5025 4475 398 269 28 14 chrX 123571897 123572042 -39027888 - L1MD3 LINE L1 -19 7976 7830 25 31 0 0 chrX 123572236 123572268 -39027662 + AT_rich Low_complexity Low_complexity 1 32 0 1432 217 57 40 chrX 123573073 123573478 -39026452 - MER92A LTR ERV1 0 412 1 238 351 0 99 chrX 123573501 123573652 -39026278 + L3 LINE CR1 1438 1573 -4 272 63 0 143 chrX 123575360 123575423 -39024507 + L1PA16 LINE L1 6107 6160 -6 413 103 19 103 chrX 123575439 123575538 -39024392 - MER2 DNA MER2_type -150 195 106 839 114 117 19 chrX 123575538 123575845 -39024085 + LTR24 LTR ERV1 1 420 -47 445 299 157 8 chrX 123576213 123576474 -39023456 + L1M4 LINE L1 3901 4200 -1946 42457 34 1 4 chrX 123576490 123582648 -39017282 + L1PA3 LINE L1 8 6152 -3 1311 116 21 0 chrX 123583039 123583229 -39016701 - AluSg/x SINE Alu -20 292 99 16426 100 8 15 chrX 123583329 123586331 -39013599 - L1P3 LINE L1 -2868 3593 592 262 220 121 0 chrX 123586816 123586907 -39013023 + L1ME2 LINE L1 5780 5881 -1927 228 173 181 55 chrX 123587308 123587435 -39012495 + L1MC4 LINE L1 6963 7105 -937 215 56 56 0 chrX 123587435 123587471 -39012459 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 203 171 0 24 chrX 123587478 123587519 -39012411 + GA-rich Low_complexity Low_complexity 4 43 0 1870 258 68 10 chrX 123587521 123588246 -39011684 + L1MC4 LINE L1 7086 7852 -190 772 245 124 44 chrX 123588246 123588284 -39011646 - MLT1C LTR MaLR 0 467 433 2607 193 35 15 chrX 123588284 123588822 -39011108 - MER44D DNA MER2_type -1 604 1 772 245 124 44 chrX 123588822 123589211 -39010719 - MLT1C LTR MaLR -34 433 6 226 257 96 22 chrX 123589230 123589272 -39010658 + L1MC4 LINE L1 7871 7908 -134 246 62 0 0 chrX 123589272 123589304 -39010626 + (CA)n Simple_repeat Simple_repeat 1 32 0 226 257 96 22 chrX 123589304 123589397 -39010533 + L1MC4 LINE L1 7908 8016 -26 598 299 75 68 chrX 123589413 123589927 -39010003 + L1ME2 LINE L1 918 1471 -4862 2232 121 0 0 chrX 123589939 123590244 -39009686 + AluSx SINE Alu 1 305 -7 1887 248 45 14 chrX 123590283 123591370 -39008560 + L1ME2 LINE L1 4929 6053 -180 702 212 31 21 chrX 123592520 123592713 -39007217 + L1ME2 LINE L1 5947 6141 -23 1864 153 0 21 chrX 123592733 123593046 -39006884 - AluJo SINE Alu 0 307 1 347 363 18 12 chrX 123593169 123593340 -39006590 + L1MEd LINE L1 1908 2079 -4317 653 242 239 0 chrX 123593357 123593650 -39006280 - L1M4 LINE L1 -1717 4429 4067 419 240 40 0 chrX 123593775 123593925 -39006005 - L1M4 LINE L1 -2437 3709 3554 1322 199 13 90 chrX 123593926 123594313 -39005617 + MLT1A1 LTR MaLR 9 365 0 5006 236 84 23 chrX 123594313 123595612 -39004318 + MLT1A1-int LTR MaLR 1 1378 -357 1009 178 5 0 chrX 123595624 123595821 -39004109 + L1PBa LINE L1 3 200 -6663 8637 94 36 1 chrX 123595821 123597700 -39002230 + L1PBa LINE L1 634 2704 -4159 380 331 155 40 chrX 123597768 123598596 -39001334 + L1MEd LINE L1 2179 3101 -3114 424 185 131 31 chrX 123799168 123799298 -38800632 + MER103 DNA DNA 18 160 -6 610 271 8 0 chrX 123799778 123799911 -38800019 - L2 LINE L2 0 3272 3139 1283 180 85 19 chrX 123800649 123800966 -38798964 + MER44D DNA MER2_type 1 608 -1 577 293 90 11 chrX 123801439 123801627 -38798303 - MIR SINE MIR 0 262 60 1036 293 163 5 chrX 123801639 123802086 -38797844 + LTR33A LTR ERVL 4 521 -2 301 250 0 0 chrX 123802090 123802146 -38797784 - MIR SINE MIR -204 58 3 599 191 19 0 chrX 123802287 123802392 -38797538 + L2 LINE L2 3199 3305 -8 818 271 92 0 chrX 123802522 123802729 -38797201 + MIR SINE MIR 23 248 -14 233 224 0 35 chrX 123802739 123802797 -38797133 + (TTA)n Simple_repeat Simple_repeat 1 56 0 478 234 90 0 chrX 123803695 123803806 -38796124 - L2 LINE L2 0 3313 3193 2064 122 7 10 chrX 123804765 123805068 -38794862 + AluSq SINE Alu 2 303 -10 898 289 69 35 chrX 123805882 123806175 -38793755 - L1ME3A LINE L1 -208 5962 5648 2405 143 48 14 chrX 123806175 123806589 -38793341 - MSTA LTR MaLR 0 428 1 898 289 69 35 chrX 123806589 123806728 -38793202 - L1ME3A LINE L1 -522 5648 5515 208 339 0 15 chrX 123807121 123807186 -38792744 - L2 LINE L2 0 3272 3209 484 308 117 9 chrX 123807466 123807680 -38792250 - MIR SINE MIR -6 256 20 616 311 25 69 chrX 123808205 123808482 -38791448 + L2 LINE L2 3008 3272 0 1040 260 25 0 chrX 123808607 123808842 -38791088 - MIR SINE MIR -9 253 13 628 304 57 17 chrX 123809107 123809337 -38790593 + MIR SINE MIR 22 260 -2 378 357 70 36 chrX 123809447 123809892 -38790038 + L2 LINE L2 1802 2261 -1053 21 0 0 0 chrX 123810587 123810608 -38789322 + AT_rich Low_complexity Low_complexity 1 21 0 183 129 0 0 chrX 123810740 123810771 -38789159 + (TG)n Simple_repeat Simple_repeat 1 31 0 402 275 184 23 chrX 123811847 123812065 -38787865 + MIR SINE MIR 9 261 -1 381 277 34 8 chrX 123812379 123812498 -38787432 - L2 LINE L2 -219 3053 2932 221 183 17 0 chrX 123813193 123813253 -38786677 + (CAT)n Simple_repeat Simple_repeat 2 62 0 381 260 271 6 chrX 123814323 123814504 -38785426 + MIR SINE MIR 28 256 -6 309 300 60 20 chrX 123815136 123815236 -38784694 + L2 LINE L2 3169 3272 0 259 391 0 0 chrX 123815736 123815828 -38784102 + MIR SINE MIR 158 249 -13 368 239 165 0 chrX 123817381 123817490 -38782440 - MIR SINE MIR -59 203 77 22 35 0 0 chrX 123817490 123817519 -38782411 + AT_rich Low_complexity Low_complexity 1 29 0 282 294 101 52 chrX 123817525 123817670 -38782260 - MIR SINE MIR -60 148 3 230 363 9 116 chrX 123817766 123817794 -38782136 - L2 LINE L2 0 3272 3243 1848 132 54 3 chrX 123817794 123818089 -38781841 + AluSx SINE Alu 1 310 -2 230 363 9 116 chrX 123818089 123818388 -38781542 - L2 LINE L2 -29 3243 2980 323 266 120 45 chrX 123819769 123820470 -38779460 + L1MC4a LINE L1 5307 5954 -1854 189 0 0 0 chrX 123820470 123820491 -38779439 + (GA)n Simple_repeat Simple_repeat 1 21 0 323 266 120 45 chrX 123820491 123821001 -38778929 + L1MC4a LINE L1 5954 6643 -1165 1013 212 0 0 chrX 123821005 123821189 -38778741 + FRAM SINE Alu 1 176 0 13699 179 44 14 chrX 123821442 123827333 -38772597 + L1PB1 LINE L1 634 6865 -2 346 311 47 97 chrX 123827337 123827678 -38772252 + HAL1b LINE L1 103 426 -922 1551 60 0 0 chrX 123827858 123828059 -38771871 + L1PA5 LINE L1 5954 6154 0 360 312 48 57 chrX 123828768 123829082 -38770848 + L1ME LINE L1 5056 5366 -780 278 295 48 58 chrX 123829150 123829201 -38770729 + L1ME LINE L1 5483 5533 -588 947 40 0 16 chrX 123829201 123829325 -38770605 + L1PA4 LINE L1 6034 6155 0 278 295 48 58 chrX 123829325 123829480 -38770450 + L1ME LINE L1 5533 5687 -434 734 274 61 33 chrX 123829493 123829738 -38770192 - MIR SINE MIR 0 262 11 229 243 84 28 chrX 123829768 123829875 -38770055 + L1ME LINE L1 5770 5882 -239 5735 243 60 45 chrX 123831336 123833103 -38766827 - L1M4c LINE L1 -4586 2373 566 371 21 21 0 chrX 123833103 123833151 -38766779 + (CA)n Simple_repeat Simple_repeat 1 49 0 5735 243 60 45 chrX 123833151 123833718 -38766212 - L1M4c LINE L1 -6393 566 9 772 274 29 29 chrX 123835219 123835460 -38764470 + MIR SINE MIR 8 248 -14 2051 102 20 3 chrX 123835914 123836208 -38763722 - AluSx SINE Alu -13 299 1 689 231 0 46 chrX 123836236 123836431 -38763499 - L1MB5 LINE L1 0 6174 5989 1380 177 76 22 chrX 123836431 123836708 -38763222 - MSTA LTR MaLR -136 292 1 3208 247 46 30 chrX 123836708 123837792 -38762138 - L1M4 LINE L1 -1346 4800 3699 1351 273 33 28 chrX 123837794 123838186 -38761744 + L1MB1 LINE L1 413 806 -5497 477 0 0 0 chrX 123838291 123838344 -38761586 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2464 242 78 8 chrX 123838432 123839446 -38760484 + L1MB1 LINE L1 824 1787 -4516 10377 224 45 15 chrX 123839514 123839710 -38760220 + L1MB1 LINE L1 2017 2206 -4176 1500 183 10 92 chrX 123839710 123840103 -38759827 - MLT1A1 LTR MaLR 0 365 5 10377 224 45 15 chrX 123840103 123842983 -38756947 + L1MB1 LINE L1 2206 5193 -1189 16347 171 30 30 chrX 123842984 123848210 -38751720 + L1PA14 LINE L1 12 4774 -2810 7286 149 17 15 chrX 123848198 123850331 -38749599 + L1PA14 LINE L1 5446 7593 -6 * 4093 188 30 10 chrX 123850347 123851461 -38748469 + L1MB1 LINE L1 5178 6313 -91 3666 226 216 30 chrX 123851465 123852900 -38747030 - L1M3e LINE L1 -5028 2002 301 254 156 62 62 chrX 123852900 123852964 -38746966 - L1M3e LINE L1 -6452 578 515 2546 136 52 9 chrX 123853029 123853492 -38746438 - L1MA5 LINE L1 0 6300 5818 5163 86 6 7 chrX 123853499 123854212 -38745718 - L1PA8 LINE L1 0 6172 5461 20966 59 42 0 chrX 123854213 123856987 -38742943 + L1P LINE L1 426 3316 -2830 5933 35 0 0 chrX 123856983 123857697 -38742233 + L1P LINE L1 4050 4763 -1383 * 210 289 0 134 chrX 123857863 123858005 -38741925 + L2 LINE L2 3150 3272 0 1512 151 7 79 chrX 123858054 123858403 -38741527 + AluJo SINE Alu 1 327 0 234 62 0 0 chrX 123858878 123858910 -38741020 + (CA)n Simple_repeat Simple_repeat 2 33 0 854 251 87 99 chrX 123859259 123859674 -38740256 + MLT1F LTR MaLR 1 410 -132 2496 232 34 10 chrX 123859674 123860425 -38739505 - L1M4 LINE L1 -2019 4127 3176 7282 46 4 0 chrX 123860527 123861463 -38738467 + L1PA5 LINE L1 2373 3312 -2834 10915 39 0 1 chrX 123861463 123863559 -38736371 + L1PA5 LINE L1 4050 6146 -8 38 22 0 0 chrX 123863559 123863604 -38736326 + AT_rich Low_complexity Low_complexity 1 45 0 16219 123 6 8 chrX 123863604 123866325 -38733605 - L1PA8A LINE L1 -656 5790 3076 2711 187 79 43 chrX 123866322 123867436 -38732494 - L1PA8A LINE L1 -4528 1933 717 * 2645 198 6 10 chrX 123867441 123867946 -38731984 - L1PA8A LINE L1 -5372 503 1 1914 120 40 70 chrX 123867948 123867984 -38731946 - L1MA5 LINE L1 -468 5832 5796 333 0 0 0 chrX 123867984 123868021 -38731909 + (TG)n Simple_repeat Simple_repeat 2 38 0 1914 120 40 70 chrX 123868021 123868358 -38731572 - L1MA5 LINE L1 -504 5796 5470 465 328 10 36 chrX 123869380 123869572 -38730358 + MIR SINE MIR 65 251 -11 183 80 0 0 chrX 123869979 123870004 -38729926 + (CAA)n Simple_repeat Simple_repeat 1 25 0 907 298 0 8 chrX 123870010 123870248 -38729682 - MIR SINE MIR -12 250 15 1460 272 91 91 chrX 123870287 123870882 -38729048 - MLT1G LTR MaLR 0 590 1 303 228 25 0 chrX 123871665 123871744 -38728186 - MLT1F LTR MaLR 0 542 462 271 263 0 25 chrX 123871951 123872031 -38727899 - MLT1H LTR MaLR -378 171 94 567 300 30 15 chrX 123872850 123872931 -38726999 - MIR SINE MIR -3 259 181 2248 161 95 0 chrX 123872931 123873322 -38726608 + MSTC LTR MaLR 1 428 0 567 300 30 15 chrX 123873322 123873440 -38726490 - MIR SINE MIR -81 181 57 180 111 0 0 chrX 123873592 123873619 -38726311 + (GGGTG)n Simple_repeat Simple_repeat 4 30 0 2207 51 0 109 chrX 123874423 123874754 -38725176 + AluY SINE Alu 1 295 -16 1355 79 0 0 chrX 123874754 123874918 -38725012 + AluSq SINE Alu 134 297 -16 546 231 184 0 chrX 123875009 123875156 -38724774 - MER58B DNA MER1_type -1 340 167 1100 261 39 31 chrX 123875916 123876299 -38723631 + L1MC3 LINE L1 4 389 -5656 7704 230 76 30 chrX 123876346 123876803 -38723127 + L1MC3 LINE L1 2435 2869 -5334 2334 174 21 5 chrX 123876803 123877228 -38722702 + MSTB1 LTR MaLR 1 432 0 7704 230 76 30 chrX 123877228 123879314 -38720616 + L1MC3 LINE L1 2869 4857 -3346 1228 154 18 0 chrX 123879314 123879535 -38720395 - L1MA7 LINE L1 0 6291 6067 7704 230 76 30 chrX 123879535 123880298 -38719632 + L1MC3 LINE L1 4857 5583 -2620 192 40 0 0 chrX 123880298 123880323 -38719607 + (CA)n Simple_repeat Simple_repeat 2 26 0 7704 230 76 30 chrX 123880323 123880637 -38719293 + L1MC3 LINE L1 5583 5881 -2322 2113 124 13 3 chrX 123880637 123880944 -38718986 + AluSg SINE Alu 1 310 0 7704 230 76 30 chrX 123880944 123881990 -38717940 + L1MC3 LINE L1 5881 7303 -900 360 0 0 0 chrX 123881990 123882030 -38717900 + (CA)n Simple_repeat Simple_repeat 2 41 0 7704 230 76 30 chrX 123882030 123882258 -38717672 + L1MC3 LINE L1 7303 7519 -684 1269 159 108 78 chrX 123882259 123882593 -38717337 - MER2 DNA MER2_type -1 344 1 227 310 10 30 chrX 123882593 123882693 -38717237 + MLT1F1 LTR MaLR 37 134 -433 2902 145 53 30 chrX 123882694 123882963 -38716967 + L1MC3 LINE L1 7200 7461 -324 2070 113 22 72 chrX 123882963 123883377 -38716553 + L1MA7 LINE L1 5899 6291 0 2902 145 53 30 chrX 123883377 123883672 -38716258 + L1MC3 LINE L1 7461 7777 -8 1502 150 90 8 chrX 123883680 123883834 -38716096 - AluJo SINE Alu -24 288 148 189 0 0 0 chrX 123883834 123883855 -38716075 + (TG)n Simple_repeat Simple_repeat 2 22 0 1502 150 90 8 chrX 123883855 123883966 -38715964 - AluJo SINE Alu -164 148 1 339 360 7 15 chrX 123885145 123885281 -38714649 - MER5A DNA MER1_type 0 189 55 * 469 277 0 17 chrX 123885170 123885289 -38714641 + MER5A DNA MER1_type 37 153 -36 8064 62 2 2 chrX 123885315 123886374 -38713556 - L1P LINE L1 -867 5279 4221 903 60 30 0 chrX 123887735 123887869 -38712061 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 463 363 29 40 chrX 123888605 123888728 -38711202 - MIR SINE MIR -2 260 137 2142 161 39 5 chrX 123888728 123889112 -38710818 + MLT2C1 LTR ERVL 1 397 0 463 363 29 40 chrX 123889112 123889247 -38710683 - MIR SINE MIR -125 137 8 21 36 0 0 chrX 123889348 123889376 -38710554 + AT_rich Low_complexity Low_complexity 1 28 0 732 281 71 8 chrX 123889388 123889626 -38710304 - MIR SINE MIR 0 262 10 382 328 151 0 chrX 123889907 123890093 -38709837 + MIR SINE MIR 13 226 -36 287 314 40 16 chrX 123890367 123890491 -38709439 - L2 LINE L2 0 3272 3146 667 259 90 50 chrX 123890541 123890742 -38709188 - MIR SINE MIR -5 257 49 1292 236 93 81 chrX 123891001 123891496 -38708434 - MLT1F1 LTR MaLR 0 567 67 207 204 0 0 chrX 123891531 123891575 -38708355 + T-rich Low_complexity Low_complexity 2 45 0 13818 160 15 4 chrX 123891579 123895244 -38704686 - L1MA1 LINE L1 -4 6298 2588 851 107 23 0 chrX 123895455 123895586 -38704344 - L1PB2 LINE L1 -8 6143 6010 4435 152 20 2 chrX 123895607 123896944 -38702986 - L1PB2 LINE L1 -362 5789 4436 695 294 15 20 chrX 123899239 123899436 -38700494 + MIR SINE MIR 19 214 -48 250 272 158 26 chrX 123899637 123899751 -38700179 + L2 LINE L2 3137 3265 -7 848 287 33 4 chrX 123899885 123900129 -38699801 - MIR SINE MIR -9 253 3 1349 182 51 58 chrX 123902024 123902377 -38697553 + MLT1C LTR MaLR 115 467 0 202 267 241 26 chrX 123902937 123903053 -38696877 - MER5A DNA MER1_type -1 188 48 * 241 304 8 72 chrX 123903049 123903105 -38696825 - L3 LINE CR1 -1 1576 1531 742 176 15 0 chrX 123903105 123903236 -38696694 + FLAM_A SINE Alu 1 133 0 241 304 8 72 chrX 123903236 123903304 -38696626 - L3 LINE CR1 -46 1531 1460 279 269 106 0 chrX 123903365 123903469 -38696461 + MIR SINE MIR 27 141 -67 771 222 102 40 chrX 123903487 123903712 -38696218 + MIR SINE MIR 2 240 -22 207 224 9 122 chrX 123903731 123903838 -38696092 + MIR SINE MIR 129 223 -39 265 352 201 11 chrX 123903865 123904044 -38695886 - L3 LINE CR1 -242 1335 1123 370 318 73 0 chrX 123904064 123904174 -38695756 - L2 LINE L2 -8 3264 3147 523 323 208 45 chrX 123904243 123904705 -38695225 - L3 LINE CR1 -550 1027 491 675 299 15 60 chrX 123904718 123904986 -38694944 - MIR SINE MIR -1 261 6 498 323 57 35 chrX 123905007 123905236 -38694694 - L3 LINE CR1 -1201 376 143 52 69 0 0 chrX 123906088 123906189 -38693741 + AT_rich Low_complexity Low_complexity 1 101 0 916 338 46 37 chrX 123906192 123906648 -38693282 - L2 LINE L2 -16 3297 2838 238 282 14 0 chrX 123906729 123906800 -38693130 - MER103 DNA DNA -87 79 8 327 274 116 0 chrX 123907499 123907594 -38692336 + MIR SINE MIR 1 106 -156 891 218 51 0 chrX 123907599 123907796 -38692134 + MER3 DNA MER1_type 3 209 0 212 211 202 46 chrX 123909175 123909284 -38690646 - L2 LINE L2 -1 3312 3187 23 0 0 0 chrX 123909313 123909336 -38690594 + AT_rich Low_complexity Low_complexity 1 23 0 338 279 70 0 chrX 123909339 123909425 -38690505 - L2 LINE L2 -21 3251 3160 354 403 0 5 chrX 123909830 123910021 -38689909 - L2 LINE L2 -575 2739 2550 353 300 0 20 chrX 123910274 123910374 -38689556 - L2 LINE L2 -8 3305 3208 2789 176 38 6 chrX 123910394 123910944 -38688986 + L1PB4 LINE L1 5589 6156 0 1055 298 133 15 chrX 123911129 123911735 -38688195 - L2 LINE L2 -4 3309 2620 628 273 0 0 chrX 123911926 123912065 -38687865 - L2 LINE L2 0 3272 3134 1940 106 29 71 chrX 123912614 123912925 -38687005 - AluSx SINE Alu -14 298 1 323 385 14 7 chrX 123912928 123913076 -38686854 + L2 LINE L2 3119 3267 -5 308 380 66 15 chrX 123913143 123913418 -38686512 - L2 LINE L2 -188 3084 2798 260 370 11 8 chrX 123913473 123913591 -38686339 + MIR SINE MIR 26 113 -95 297 284 50 35 chrX 123913607 123913748 -38686182 - L2 LINE L2 -971 2343 2201 2700 96 11 8 chrX 123914292 123914666 -38685264 + THE1C LTR MaLR 1 375 0 4333 90 55 75 chrX 123914666 123915396 -38684534 + THE1C-int LTR MaLR 1 715 -865 2322 99 50 12 chrX 123915403 123915745 -38684185 + THE1C LTR MaLR 21 375 0 200 194 0 0 chrX 123916970 123917001 -38682929 - MIR SINE MIR -153 109 79 473 344 32 23 chrX 123917525 123917743 -38682187 - MIR SINE MIR -31 231 12 471 297 57 11 chrX 123918033 123918208 -38681722 - MLT1J LTR MaLR -59 452 270 802 311 96 31 chrX 123918339 123918757 -38681173 - L1MEd LINE L1 -5593 526 82 390 235 96 26 chrX 123918757 123918872 -38681058 + L2 LINE L2 3189 3311 -2 406 135 10 104 chrX 123918872 123918968 -38680962 - L1MEd LINE L1 -6030 89 3 552 197 67 9 chrX 123919337 123919516 -38680414 - MIR SINE MIR -12 250 7 723 278 47 39 chrX 123920417 123920672 -38679258 - MIR SINE MIR -2 260 4 190 329 29 0 chrX 123920708 123920778 -38679152 - L2 LINE L2 -8 3264 3193 209 325 137 8 chrX 123921126 123921243 -38678687 - L2 LINE L2 -2 3270 3139 185 253 53 63 chrX 123921382 123921477 -38678453 - L2 LINE L2 -247 3025 2932 639 280 101 18 chrX 123921681 123921899 -38678031 + MIR SINE MIR 25 260 -2 2386 129 0 0 chrX 123922051 123922414 -38677516 - L1PB1 LINE L1 -79 6072 5710 500 120 0 22 chrX 123922414 123922504 -38677426 + L1PB1 LINE L1 6059 6148 -3 417 179 53 29 chrX 123923201 123923404 -38676526 - L1MA9 LINE L1 -1 6311 6007 321 26 0 0 chrX 123923422 123923460 -38676470 + (CATTT)n Simple_repeat Simple_repeat 2 39 0 235 259 0 19 chrX 123923473 123923527 -38676403 - MIR SINE MIR -180 82 30 1336 154 47 139 chrX 123924019 123924058 -38675872 + MLT1A1 LTR MaLR 1 42 -323 1507 89 44 27 chrX 123924058 123924283 -38675647 - MER30 DNA MER1_type 0 230 2 1336 154 47 139 chrX 123924283 123924645 -38675285 + MLT1A1 LTR MaLR 42 365 0 258 309 171 4 chrX 123924839 123925085 -38674845 + L3 LINE CR1 704 990 -587 183 302 16 32 chrX 123925083 123925146 -38674784 - L2 LINE L2 -1 3312 3251 * 377 284 16 0 chrX 123925147 123925274 -38674656 + MER97b DNA MER1_type? 51 179 -874 361 225 0 12 chrX 123925383 123925463 -38674467 + MER112 DNA MER1_type 3 81 -179 249 119 68 0 chrX 123925469 123925528 -38674402 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 378 274 11 91 chrX 123925565 123925751 -38674179 + MER112 DNA MER1_type 81 251 -9 14536 146 20 6 chrX 123926833 123927345 -38672585 - Tigger1 DNA MER2_type 0 2418 1915 2214 172 2 48 chrX 123927345 123927799 -38672131 - Tigger2a DNA MER2_type -1 433 1 14536 146 20 6 chrX 123927799 123929669 -38670261 - Tigger1 DNA MER2_type -503 1915 1 1645 227 44 42 chrX 123929962 123930331 -38669599 - MLT2B1 LTR ERVL 0 520 148 339 78 0 0 chrX 123930331 123930382 -38669548 + (CA)n Simple_repeat Simple_repeat 2 52 0 1645 227 44 42 chrX 123930382 123930531 -38669399 - MLT2B1 LTR ERVL -372 148 1 2561 237 29 7 chrX 123932281 123932875 -38667055 + MER90 LTR ERV1 3 609 -5 555 246 29 29 chrX 123933297 123933435 -38666495 - L2 LINE L2 -17 3296 3159 345 293 19 112 chrX 123936309 123936379 -38663551 - MER5A DNA MER1_type 0 189 114 1843 167 3 0 chrX 123936379 123936667 -38663263 + AluJo SINE Alu 1 289 -23 345 293 19 112 chrX 123936667 123936801 -38663129 - MER5A DNA MER1_type -75 114 4 201 344 0 0 chrX 123937123 123937184 -38662746 - MIR3 SINE MIR -9 199 139 371 219 24 0 chrX 123937816 123937898 -38662032 + L2 LINE L2 1964 2047 -1267 324 0 0 0 chrX 123937904 123937940 -38661990 + (TAA)n Simple_repeat Simple_repeat 2 37 0 569 247 45 50 chrX 123938309 123938518 -38661412 - MIR SINE MIR -6 256 40 195 152 0 0 chrX 123939095 123939141 -38660789 + T-rich Low_complexity Low_complexity 1 46 0 233 231 19 0 chrX 123939304 123939356 -38660574 + CT-rich Low_complexity Low_complexity 1 53 0 25 0 0 0 chrX 123939839 123939864 -38660066 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 123940191 123940219 -38659711 + AT_rich Low_complexity Low_complexity 1 28 0 449 262 0 9 chrX 123940925 123941032 -38658898 + MIR SINE MIR 51 156 -106 4674 199 21 14 chrX 123941042 123942134 -38657796 - L1PB1 LINE L1 -918 5228 4129 6045 87 20 14 chrX 123942134 123943053 -38656877 + L1PB1 LINE L1 5227 6151 0 25 51 0 0 chrX 123943055 123943094 -38656836 + AT_rich Low_complexity Low_complexity 1 39 0 276 30 0 0 chrX 123943465 123943498 -38656432 + (TG)n Simple_repeat Simple_repeat 1 33 0 246 62 0 0 chrX 123943541 123943573 -38656357 + (TC)n Simple_repeat Simple_repeat 1 32 0 2186 244 100 11 chrX 123943764 123944468 -38655462 + L2 LINE L2 2033 2891 -423 1255 274 61 35 chrX 123944468 123944927 -38655003 + MLT1E LTR MaLR 1 471 -122 438 283 8 0 chrX 123945042 123945162 -38654768 + MLT1E LTR MaLR 422 542 0 758 243 6 28 chrX 123945164 123945345 -38654585 + L2 LINE L2 2898 3074 -239 810 127 0 0 chrX 123945350 123945468 -38654462 + FLAM_C SINE Alu 1 118 -15 964 126 11 11 chrX 123945472 123945646 -38654284 + (GGAAA)n Simple_repeat Simple_repeat 3 176 0 709 272 34 5 chrX 123945808 123946014 -38653916 + L2 LINE L2 3102 3313 0 889 280 179 64 chrX 123946266 123946812 -38653118 - L2 LINE L2 -721 2593 1985 713 265 49 26 chrX 123946819 123947225 -38652705 + LTR16B LTR ERVL 7 462 -2 3644 303 100 27 chrX 123947231 123947348 -38652582 - L2 LINE L2 -1331 1983 1876 17969 28 0 0 chrX 123947348 123950247 -38649683 - L1PA4 LINE L1 -3 6152 3254 3644 303 100 27 chrX 123950247 123950647 -38649283 - L2 LINE L2 -1438 1876 1507 234 29 29 0 chrX 123950647 123950681 -38649249 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 2171 106 0 0 chrX 123950681 123950964 -38648966 - AluY SINE Alu -1 316 1 3644 303 100 27 chrX 123950964 123952185 -38647745 - L2 LINE L2 -1806 1508 94 288 75 0 0 chrX 123952223 123952263 -38647667 + MADE1 DNA Mariner 1 40 -40 5373 69 1 0 chrX 123952263 123952956 -38646974 - L1PA10 LINE L1 -10 6158 5465 5133 125 16 5 chrX 123952959 123953862 -38646068 + L1PA10 LINE L1 4562 5473 -701 313 98 20 0 chrX 123953862 123953913 -38646017 + MADE1 DNA Mariner 29 80 0 506 222 7 22 chrX 123954337 123954472 -38645458 + MER103 DNA DNA 3 135 -31 22 0 0 0 chrX 123954851 123954873 -38645057 + AT_rich Low_complexity Low_complexity 1 22 0 274 312 0 0 chrX 123955899 123955976 -38643954 - MIR SINE MIR -27 235 159 234 297 0 0 chrX 123956326 123956390 -38643540 - MIR SINE MIR -2 260 197 1438 283 85 16 chrX 123956390 123956835 -38643095 - LTR33 LTR ERVL -1 520 45 437 272 84 31 chrX 123956869 123957060 -38642870 - MIR SINE MIR -60 202 2 365 236 32 138 chrX 123957060 123957186 -38642744 + MER5B DNA MER1_type 23 134 -55 1574 173 47 0 chrX 123957186 123957288 -38642642 + AluJo SINE Alu 18 114 -198 2649 29 3 0 chrX 123957288 123957594 -38642336 + AluY SINE Alu 1 307 -4 1574 173 47 0 chrX 123957594 123957769 -38642161 + AluJo SINE Alu 114 308 -4 365 236 32 138 chrX 123957769 123957820 -38642110 + MER5B DNA MER1_type 134 189 0 228 260 73 26 chrX 123957843 123957925 -38642005 + MIR SINE MIR 98 181 -60 569 310 85 15 chrX 123958340 123958611 -38641319 + L2 LINE L2 2172 2461 -853 334 211 112 62 chrX 123958848 123959009 -38640921 - L1MC4a LINE L1 -1731 6077 5909 27 0 0 0 chrX 123959019 123959046 -38640884 + AT_rich Low_complexity Low_complexity 1 27 0 301 246 123 23 chrX 123959512 123959642 -38640288 + L1ME LINE L1 5537 5679 -442 6002 113 7 22 chrX 123959831 123960373 -38639557 - L1PA15 LINE L1 -7 6158 5609 563 66 13 0 chrX 123960373 123960449 -38639481 - MADE1 DNA Mariner -3 77 1 6002 113 7 22 chrX 123960449 123961302 -38638628 - L1PA15 LINE L1 -556 5609 4786 282 29 0 0 chrX 123961302 123961337 -38638593 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6002 113 7 22 chrX 123961337 123961901 -38638029 - L1PA15 LINE L1 -1379 4786 4215 245 196 0 0 chrX 123961908 123961959 -38637971 + L1 LINE L1 3516 3566 -2580 1094 286 37 7 chrX 123961976 123962381 -38637549 + L1PB1 LINE L1 135 551 -6312 2064 180 125 18 chrX 123962408 123962913 -38637017 + L1PB1 LINE L1 605 1163 -5700 15122 197 20 8 chrX 123962930 123964381 -38635549 + L1PB1 LINE L1 1332 2764 -4103 2394 79 10 0 chrX 123964381 123964684 -38635246 + AluY SINE Alu 1 306 -5 15122 197 20 8 chrX 123964684 123968656 -38631274 + L1PB1 LINE L1 2764 6867 0 7260 213 18 7 chrX 123968657 123970303 -38629627 - L1P LINE L1 -1922 4224 2561 229 250 67 8 chrX 123970507 123970627 -38629303 + L1ME4a LINE L1 5975 6101 -20 636 211 86 0 chrX 123970805 123970957 -38628973 + L1MB5 LINE L1 6010 6174 0 1297 223 106 51 chrX 123971501 123971744 -38628186 + L1ME3A LINE L1 5638 5866 -304 432 0 0 0 chrX 123971744 123971792 -38628138 + (TA)n Simple_repeat Simple_repeat 2 49 0 1297 223 106 51 chrX 123971792 123972048 -38627882 + L1ME3A LINE L1 5866 6170 0 288 53 0 0 chrX 123973426 123973464 -38626466 + (TC)n Simple_repeat Simple_repeat 1 38 0 785 313 140 39 chrX 123973468 123974416 -38625514 + L2 LINE L2 1606 2649 -665 933 315 42 30 chrX 123976074 123976598 -38623332 + HAL1 LINE L1 48 577 -1930 461 326 92 22 chrX 123976854 123977081 -38622849 + MIR SINE MIR 16 258 -4 1389 106 166 2 chrX 123977516 123977807 -38622123 + L1MA5A LINE L1 5953 6287 -10 513 283 169 55 chrX 123977867 123978252 -38621678 - MLT1H LTR MaLR -13 536 108 270 136 0 0 chrX 123978444 123978488 -38621442 + (T)n Simple_repeat Simple_repeat 1 44 0 309 339 36 36 chrX 123980317 123980538 -38619392 + L2 LINE L2 2736 2956 -358 22 0 0 0 chrX 123980932 123980954 -38618976 + AT_rich Low_complexity Low_complexity 1 22 0 227 79 26 0 chrX 123981861 123981899 -38618031 + (CA)n Simple_repeat Simple_repeat 2 40 0 498 61 0 0 chrX 123982727 123982793 -38617137 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 489 264 27 27 chrX 123983559 123983707 -38616223 + MER5A DNA MER1_type 39 186 -3 2218 71 0 77 chrX 123984024 123984347 -38615583 + AluSx SINE Alu 1 298 -14 308 310 83 57 chrX 123984591 123984947 -38614983 + L2 LINE L2 2731 3089 -183 325 213 0 62 chrX 123984976 123985056 -38614874 + L2 LINE L2 3234 3308 -5 180 111 0 0 chrX 123985081 123985108 -38614822 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 597 231 40 89 chrX 123985826 123986051 -38613879 + MIR SINE MIR 8 221 -41 693 323 31 28 chrX 123986133 123986387 -38613543 + MIR SINE MIR 8 262 0 336 297 11 0 chrX 123986821 123986912 -38613018 + L3 LINE CR1 1483 1574 -3 362 273 0 0 chrX 123986922 123986999 -38612931 + MIR SINE MIR 77 153 -55 244 324 0 0 chrX 123987823 123987897 -38612033 - MIR SINE MIR -4 258 185 1990 139 121 21 chrX 123988032 123988421 -38611509 + MSTA LTR MaLR 1 428 0 278 311 96 15 chrX 123988665 123988800 -38611130 - L2 LINE L2 -639 2675 2530 2024 203 80 23 chrX 123990712 123991190 -38608740 + MLT1D LTR MaLR 1 505 0 273 211 57 163 chrX 123991448 123991571 -38608359 - MIR SINE MIR -43 219 110 224 339 0 18 chrX 123992609 123992665 -38607265 + L2 LINE L2 3035 3089 -183 1714 160 93 9 chrX 123992763 123993107 -38606823 - THE1C LTR MaLR 0 375 3 6890 61 18 0 chrX 123993227 123994191 -38605739 - L1PA7 LINE L1 -2 6152 5181 2861 9 0 9 chrX 123994207 123994528 -38605402 + AluYb8 SINE Alu 1 318 0 6963 52 13 0 chrX 123994543 123995726 -38604204 + L1PA7 LINE L1 4871 6151 -3 279 188 0 59 chrX 123996011 123996096 -38603834 - L1M4 LINE L1 -2154 3992 3913 482 250 26 0 chrX 123996117 123996233 -38603697 + MER5B DNA MER1_type 60 178 0 195 42 0 0 chrX 123998175 123998199 -38601731 + (TC)n Simple_repeat Simple_repeat 2 25 0 216 97 0 0 chrX 123998225 123998256 -38601674 + (CA)n Simple_repeat Simple_repeat 2 32 0 284 111 0 0 chrX 123998260 123998296 -38601634 + tRNA-Met-e tRNA tRNA 1 36 -39 341 167 0 12 chrX 123998296 123998380 -38601550 + (TA)n Simple_repeat Simple_repeat 2 84 0 20738 27 0 2 chrX 123998428 124001674 -38598256 + L1PA3 LINE L1 2901 6142 -13 210 37 0 0 chrX 124001674 124001701 -38598229 + (TTAAA)n Simple_repeat Simple_repeat 4 30 0 20738 27 0 2 chrX 124001701 124001714 -38598216 + L1PA3 LINE L1 6142 6154 -1 363 216 9 72 chrX 124001980 124002091 -38597839 + L1ME4a LINE L1 5955 6058 -63 185 0 0 39 chrX 124002142 124002168 -38597762 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2095 123 0 7 chrX 124002172 124002473 -38597457 - AluSx SINE Alu -13 299 1 216 0 0 0 chrX 124002492 124002516 -38597414 + (A)n Simple_repeat Simple_repeat 1 24 0 * 293 67 0 22 chrX 124002514 124002559 -38597371 + (GGGAA)n Simple_repeat Simple_repeat 4 47 0 239 322 11 11 chrX 124002561 124002651 -38597279 - MIR SINE MIR -78 130 41 331 275 113 6 chrX 124002710 124002870 -38597060 - L1ME4a LINE L1 -4 6117 5941 313 248 90 53 chrX 124002888 124003021 -38596909 - L1ME4a LINE L1 -238 5883 5746 233 229 24 12 chrX 124004156 124004239 -38595691 + L1MC4 LINE L1 6609 6692 -1350 1464 201 58 0 chrX 124004694 124004972 -38594958 + AluJo SINE Alu 3 296 -16 384 232 68 51 chrX 124005145 124005322 -38594608 - L1ME4a LINE L1 -1319 4827 4648 1088 147 61 0 chrX 124006033 124006231 -38593699 + Tigger2 DNA MER2_type 1 210 -2508 792 167 76 0 chrX 124006230 124006374 -38593556 + Tigger2 DNA MER2_type 2564 2718 0 * 840 301 37 47 chrX 124006403 124007034 -38592896 - L1MC4a LINE L1 -769 5377 4742 2184 74 0 7 chrX 124007034 124007330 -38592600 + L1PA13 LINE L1 5866 6159 -4 840 301 37 47 chrX 124007330 124007384 -38592546 - L1MC4a LINE L1 -1404 4742 5209 2183 136 3 0 chrX 124007384 124007693 -38592237 - AluSx SINE Alu -2 310 1 840 301 37 47 chrX 124007693 124007830 -38592100 - L1MC4a LINE L1 -936 5210 5073 349 348 50 46 chrX 124008336 124008595 -38591335 - HAL1 LINE L1 -1450 1057 798 495 270 20 78 chrX 124009057 124009261 -38590669 + MIR SINE MIR 16 207 -55 9355 144 9 6 chrX 124010077 124012440 -38587490 + L1PA13 LINE L1 3788 6155 -8 280 238 48 0 chrX 124012653 124012716 -38587214 + L2 LINE L2 3243 3308 -5 332 275 95 74 chrX 124012719 124013003 -38586927 + L1M4 LINE L1 3682 3971 -2175 314 342 158 9 chrX 124013033 124013375 -38586555 + L1M4 LINE L1 4027 4419 -1727 310 305 5 27 chrX 124013427 124013614 -38586316 + L1M4 LINE L1 4500 4682 -1464 208 227 0 0 chrX 124013670 124013714 -38586216 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 381 338 31 40 chrX 124013804 124014029 -38585901 - MIR SINE MIR -38 224 2 237 330 17 62 chrX 124014123 124014299 -38585631 - L2 LINE L2 0 3313 3146 1521 195 18 50 chrX 124014328 124014667 -38585263 + MLT1A1 LTR MaLR 38 365 0 2316 62 16 29 chrX 124014721 124015028 -38584902 - AluY SINE Alu -8 303 1 788 287 15 32 chrX 124015055 124015304 -38584626 - MIR SINE MIR 0 262 19 484 347 116 30 chrX 124015753 124016270 -38583660 - L2 LINE L2 -14 3258 2709 622 312 143 23 chrX 124016932 124017233 -38582697 - MLT1K LTR MaLR -68 520 184 498 272 22 22 chrX 124017333 124017469 -38582461 - MIR SINE MIR -126 136 1 276 245 309 7 chrX 124017898 124018037 -38581893 + MIR SINE MIR 68 248 -14 25 31 0 0 chrX 124019551 124019583 -38580347 + AT_rich Low_complexity Low_complexity 1 32 0 314 336 75 81 chrX 124020161 124020694 -38579236 + L2 LINE L2 2734 3261 -11 225 0 0 0 chrX 124020976 124021001 -38578929 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 405 0 0 0 chrX 124021530 124021575 -38578355 + (TG)n Simple_repeat Simple_repeat 2 46 0 745 252 92 14 chrX 124022737 124022955 -38576975 + MIR SINE MIR 20 254 -8 23 0 0 0 chrX 124024127 124024150 -38575780 + AT_rich Low_complexity Low_complexity 1 23 0 247 283 33 0 chrX 124024498 124024558 -38575372 + Charlie8 DNA MER1_type 1 62 -2355 713 273 123 68 chrX 124025434 124025921 -38574009 + LTR33 LTR ERVL 6 519 -2 185 216 0 0 chrX 124025921 124025958 -38573972 + L2 LINE L2 3236 3272 0 213 108 0 0 chrX 124026456 124026493 -38573437 + (A)n Simple_repeat Simple_repeat 1 37 0 2125 199 42 21 chrX 124028088 124028566 -38571364 - MLT1D LTR MaLR 0 505 18 386 260 93 20 chrX 124028879 124029029 -38570901 - MIR SINE MIR -49 213 53 224 291 26 103 chrX 124029625 124029742 -38570188 - MIR SINE MIR -5 257 150 565 244 25 0 chrX 124029747 124029866 -38570064 + Tigger3(Golem) DNA MER2_type 21 142 -2887 * 1684 133 8 4 chrX 124029863 124030119 -38569811 + Tigger3(Golem) DNA MER2_type 2771 3027 -2 372 296 48 16 chrX 124030120 124030245 -38569685 - MIR SINE MIR -114 148 20 950 128 0 0 chrX 124031134 124031267 -38568663 + FLAM_C SINE Alu 1 133 0 792 164 0 0 chrX 124031503 124031637 -38568293 - L1MA6 LINE L1 -222 6078 5945 789 96 0 0 chrX 124031640 124031755 -38568175 + L1MA6 LINE L1 6186 6300 0 2062 162 91 5 chrX 124032276 124032670 -38567260 - MSTA LTR MaLR 0 428 1 426 20 0 0 chrX 124032932 124032983 -38566947 + (TG)n Simple_repeat Simple_repeat 2 52 0 348 127 0 0 chrX 124033733 124033788 -38566142 + (TC)n Simple_repeat Simple_repeat 2 56 0 207 69 0 0 chrX 124034329 124034358 -38565572 + (GA)n Simple_repeat Simple_repeat 2 30 0 1474 210 110 68 chrX 124034451 124034952 -38564978 - LTR33A LTR ERVL 0 523 2 413 292 36 7 chrX 124034966 124035103 -38564827 + MIR SINE MIR 119 259 -3 337 349 47 24 chrX 124036217 124036386 -38563544 + MIR3 SINE MIR 24 196 -12 24 0 0 0 chrX 124036705 124036729 -38563201 + AT_rich Low_complexity Low_complexity 1 24 0 295 264 155 32 chrX 124037213 124037368 -38562562 + MIR SINE MIR 80 253 -9 19641 161 26 15 chrX 124038492 124040456 -38559474 + L1MA2 LINE L1 182 2124 -5599 5638 109 29 2 chrX 124040456 124041799 -38558131 + L1PA14 LINE L1 4789 6158 -3 19641 161 26 15 chrX 124041799 124044261 -38555669 + L1MA2 LINE L1 2124 4558 -3165 7090 49 22 33 chrX 124044261 124045282 -38554648 - L1PA7 LINE L1 -4 6150 5132 19641 161 26 15 chrX 124045282 124048299 -38551631 + L1MA2 LINE L1 4558 7723 0 1047 193 42 5 chrX 124048312 124048524 -38551406 - MIR SINE MIR -6 256 37 1917 138 0 7 chrX 124049142 124049424 -38550506 + AluSg SINE Alu 12 291 -19 284 72 0 58 chrX 124049431 124049500 -38550430 + (GAA)n Simple_repeat Simple_repeat 2 66 0 557 245 142 20 chrX 124050790 124050994 -38548936 + MIR SINE MIR 32 260 -2 617 191 170 0 chrX 124051646 124051787 -38548143 - MLT1H LTR MaLR -3 546 382 1188 200 81 23 chrX 124054070 124054380 -38545550 - MLT1D LTR MaLR 0 505 178 557 167 33 8 chrX 124054445 124054565 -38545365 - MLT1H LTR MaLR -270 235 113 352 259 12 0 chrX 124054579 124054664 -38545266 - L2 LINE L2 0 3272 3187 386 221 42 21 chrX 124054743 124054838 -38545092 - MER5A DNA MER1_type -40 149 53 605 187 53 53 chrX 124055630 124055780 -38544150 - MER69A DNA AcHobo -4 173 24 604 205 16 0 chrX 124055842 124055964 -38543966 - MER63 DNA MER1_type -76 760 11 184 330 53 11 chrX 124056111 124056205 -38543725 - L2 LINE L2 -1948 1366 1269 351 182 15 0 chrX 124056290 124056356 -38543574 + MER69A DNA AcHobo 24 90 -87 833 118 8 0 chrX 124056378 124056505 -38543425 + L1MA2 LINE L1 6165 6292 -12 1462 195 80 73 chrX 124056554 124057030 -38542900 - MLT1D LTR MaLR 0 505 27 323 333 48 9 chrX 124057550 124057655 -38542275 + L2 LINE L2 3148 3256 -16 1612 221 104 18 chrX 124057705 124058148 -38541782 + MER21B LTR ERV1 364 844 -19 385 211 0 0 chrX 124058180 124058251 -38541679 + MIR SINE MIR 46 116 -146 392 253 136 39 chrX 124058282 124058436 -38541494 + MIR SINE MIR 66 234 -28 403 290 238 21 chrX 124058678 124058968 -38540962 - L2 LINE L2 0 3272 2920 427 296 32 8 chrX 124060415 124060540 -38539390 - L2 LINE L2 -2112 1202 1075 926 291 46 31 chrX 124060540 124060929 -38539001 - L2 LINE L2 -2418 896 502 31 0 0 0 chrX 124061677 124061708 -38538222 + AT_rich Low_complexity Low_complexity 1 31 0 5731 151 5 12 chrX 124062070 124063681 -38536249 + L1PB3 LINE L1 4547 6153 -1 19115 174 20 9 chrX 124063719 124070458 -38529472 + L1PA13 LINE L1 2 6813 -1 6055 199 11 6 chrX 124070452 124071860 -38528070 + L1PA13 LINE L1 2377 3791 -2355 * 10993 89 11 3 chrX 124071860 124072261 -38527669 + L1P3 LINE L1 2 398 -6063 333 0 0 0 chrX 124072261 124072298 -38527632 + (TG)n Simple_repeat Simple_repeat 2 38 0 10993 89 11 3 chrX 124072298 124073465 -38526465 + L1P3 LINE L1 398 1582 -4879 4384 84 0 0 chrX 124073528 124074137 -38525793 + HERVH48 LTR ERV1 4832 5440 -1214 * 6962 75 7 0 chrX 124074133 124075061 -38524869 + HERVH48 LTR ERV1 5719 6652 -2 2325 72 0 58 chrX 124075063 124075409 -38524521 + MER48 LTR ERV1 1 326 -61 183 42 0 0 chrX 124075410 124075434 -38524496 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6575 45 22 1 chrX 124075435 124076260 -38523670 + L1PA7 LINE L1 5313 6154 0 8001 169 26 5 chrX 124076268 124078640 -38521290 + L1PA13 LINE L1 3784 6163 0 4648 145 5 0 chrX 124078640 124079432 -38520498 + L1PB3 LINE L1 5359 6154 0 681 184 0 9 chrX 124079590 124079704 -38520226 + FLAM_C SINE Alu 1 113 -30 507 177 0 0 chrX 124079704 124079800 -38520130 + (TA)n Simple_repeat Simple_repeat 2 97 0 985 169 0 6 chrX 124079800 124079966 -38519964 + AluSg/x SINE Alu 123 287 -23 3283 169 19 8 chrX 124080076 124080720 -38519210 - L1MB7 LINE L1 -19 6165 5515 432 299 70 13 chrX 124081057 124081214 -38518716 - MIR SINE MIR -61 201 36 229 362 28 17 chrX 124081729 124081906 -38518024 + L2 LINE L2 2871 3049 -223 633 148 41 8 chrX 124085094 124085216 -38514714 + L1M2 LINE L1 2343 2468 -4381 1024 239 5 5 chrX 124085338 124085556 -38514374 - MER58A DNA MER1_type -6 218 1 341 316 26 9 chrX 124085795 124085909 -38514021 + L1 LINE L1 3725 3840 -2306 28 29 0 0 chrX 124086116 124086151 -38513779 + AT_rich Low_complexity Low_complexity 1 35 0 389 276 17 35 chrX 124086285 124086401 -38513529 - MER5B DNA MER1_type -63 115 2 22 35 0 0 chrX 124086892 124086921 -38513009 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 124086936 124086964 -38512966 + AT_rich Low_complexity Low_complexity 1 28 0 432 317 27 22 chrX 124087408 124087591 -38512339 + L1MB3 LINE L1 2225 2408 -3738 530 299 106 15 chrX 124087592 124087856 -38512074 - L2 LINE L2 -18 3295 3008 1620 229 30 51 chrX 124088190 124088762 -38511168 - L1ME1 LINE L1 -4 6162 5603 411 73 0 0 chrX 124088764 124088819 -38511111 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5250 152 35 18 chrX 124088820 124090425 -38509505 - L1MA7 LINE L1 -6 6285 4656 4612 174 25 7 chrX 124090423 124090614 -38509316 + L1MB3 LINE L1 3508 3694 -2452 * 1933 143 3 17 chrX 124090614 124090933 -38508997 + AluSx SINE Alu 1 312 0 4612 174 25 7 chrX 124090933 124091722 -38508208 + L1MB3 LINE L1 3694 4506 -1640 2928 250 29 31 chrX 124091741 124092538 -38507392 - MER21B LTR ERV1 -48 815 21 4599 198 12 19 chrX 124092640 124094333 -38505597 + L1MB3 LINE L1 4501 6183 0 535 306 100 42 chrX 124094377 124094828 -38505102 + L1MB5 LINE L1 2982 3458 -2688 2238 223 54 11 chrX 124094892 124095638 -38504292 + L1MB5 LINE L1 5134 5914 -260 21 0 0 0 chrX 124095843 124095864 -38504066 + AT_rich Low_complexity Low_complexity 1 21 0 340 302 260 0 chrX 124095965 124096134 -38503796 + MIR SINE MIR 11 223 -39 421 254 25 25 chrX 124096164 124096286 -38503644 + MIR SINE MIR 44 165 -97 1801 158 28 0 chrX 124096314 124096605 -38503325 - AluSg SINE Alu -11 299 1 242 215 92 0 chrX 124096636 124096701 -38503229 + MIR SINE MIR 167 237 -25 357 267 22 22 chrX 124096919 124097054 -38502876 - L1MEc LINE L1 -6217 179 45 598 281 38 51 chrX 124097074 124097180 -38502750 + L1ME4a LINE L1 5471 5577 -544 2207 82 7 0 chrX 124097180 124097459 -38502471 + AluSp SINE Alu 3 283 -30 816 219 72 32 chrX 124097466 124097717 -38502213 - MIR SINE MIR 0 262 2 598 281 38 51 chrX 124097717 124098041 -38501889 + L1ME4a LINE L1 5583 5897 -224 801 272 50 103 chrX 124098065 124098521 -38501409 + L2 LINE L2 2227 2658 -656 193 326 105 53 chrX 124099696 124099791 -38500139 + L2 LINE L2 3151 3250 -22 253 316 13 0 chrX 124099808 124099887 -38500043 - MIR SINE MIR -111 151 72 356 289 108 31 chrX 124100653 124100913 -38499017 + L1ME4a LINE L1 5317 5596 -2212 759 232 0 13 chrX 124100915 124101070 -38498860 + AluJo SINE Alu 2 153 -159 1548 162 4 8 chrX 124101074 124101327 -38498603 + AluJo SINE Alu 39 290 -22 1559 192 0 17 chrX 124101329 124101616 -38498314 + AluJo SINE Alu 1 282 -30 506 226 121 72 chrX 124101665 124101849 -38498081 + L1ME4a LINE L1 5637 5839 -282 2827 136 36 5 chrX 124101849 124102268 -38497662 - MSTB1 LTR MaLR 0 432 1 506 226 121 72 chrX 124102268 124102348 -38497582 + L1ME4a LINE L1 5839 5914 -207 571 279 40 86 chrX 124102370 124102743 -38497187 + MLT1I LTR MaLR 3 358 -51 226 281 0 18 chrX 124102770 124102827 -38497103 + GA-rich Low_complexity Low_complexity 2 57 0 279 205 77 0 chrX 124102858 124102936 -38496994 + L1ME4a LINE L1 6021 6104 -17 5225 161 41 15 chrX 124102943 124103917 -38496013 - L1MC1 LINE L1 -6 6327 5329 3725 117 19 13 chrX 124103914 124104530 -38495400 - L1MCa LINE L1 -4115 2311 1692 * 6323 150 29 25 chrX 124104552 124104922 -38495008 - L1PB1 LINE L1 -2 6149 5782 189 0 0 0 chrX 124104922 124104943 -38494987 + (CA)n Simple_repeat Simple_repeat 2 22 0 6323 150 29 25 chrX 124104943 124106689 -38493241 - L1PB1 LINE L1 -369 5782 4018 2523 193 15 4 chrX 124106692 124107210 -38492720 + L1PB1 LINE L1 3475 3998 -2148 * 8001 153 67 29 chrX 124107209 124108731 -38491199 - L1MCa LINE L1 -4826 1600 21 198 243 0 0 chrX 124108866 124108903 -38491027 + MIR SINE MIR 78 114 -148 * 2340 298 27 48 chrX 124108897 124109947 -38489983 + L2 LINE L2 2034 3059 -213 1208 268 80 46 chrX 124110022 124110548 -38489382 + MLT1L LTR MaLR 66 609 -6 579 168 190 0 chrX 124110607 124110744 -38489186 + L2 LINE L2 3149 3311 -2 546 133 11 0 chrX 124111990 124112080 -38487850 - MER94 DNA DNA -42 92 2 638 251 99 24 chrX 124113834 124114045 -38485885 - MIR SINE MIR 0 262 36 417 39 0 0 chrX 124114408 124114459 -38485471 + (CA)n Simple_repeat Simple_repeat 2 52 0 330 26 0 0 chrX 124114458 124114497 -38485433 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 890 224 29 10 chrX 124114524 124114729 -38485201 + MIR SINE MIR 41 249 -13 1339 129 5 10 chrX 124114926 124115127 -38484803 + L1PA16 LINE L1 5966 6165 -1 439 230 88 68 chrX 124116067 124116215 -38483715 - L2 LINE L2 0 3313 3163 306 0 0 0 chrX 124116803 124116837 -38483093 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1849 134 25 4 chrX 124116837 124117114 -38482816 - AluJb SINE Alu -29 283 1 214 286 16 16 chrX 124117125 124117188 -38482742 - L2 LINE L2 0 3272 3210 486 250 32 0 chrX 124117395 124117519 -38482411 + MIR SINE MIR 134 261 -1 288 236 0 0 chrX 124117519 124117608 -38482322 + (CAT)n Simple_repeat Simple_repeat 1 89 0 471 63 0 0 chrX 124117760 124117823 -38482107 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 877 184 13 6 chrX 124118218 124118376 -38481554 + MER45A DNA AcHobo 20 178 0 186 162 0 59 chrX 124118917 124118985 -38480945 + CT-rich Low_complexity Low_complexity 4 67 0 377 276 15 52 chrX 124119018 124119152 -38480778 - MIR SINE MIR -62 146 18 860 205 133 20 chrX 124119213 124119408 -38480522 - MER20 DNA MER1_type -2 217 1 341 333 30 15 chrX 124120003 124120135 -38479795 + MER94 DNA DNA 1 134 0 994 237 173 47 chrX 124120178 124120664 -38479266 - MLT1H LTR MaLR 0 549 3 333 169 0 15 chrX 124121410 124121475 -38478455 + MIR SINE MIR 81 144 -64 530 310 5 16 chrX 124122132 124122319 -38477611 + MLT1L LTR MaLR 431 615 0 393 317 76 7 chrX 124123198 124123343 -38476587 + L2 LINE L2 3102 3256 -16 184 176 0 0 chrX 124124468 124124502 -38475428 + MIR SINE MIR 218 251 -11 734 286 45 20 chrX 124124735 124124980 -38474950 - MIR SINE MIR -6 256 6 369 0 0 0 chrX 124126642 124126683 -38473247 + (TC)n Simple_repeat Simple_repeat 2 42 0 339 226 0 0 chrX 124126801 124126903 -38473027 + GA-rich Low_complexity Low_complexity 1 102 0 25 0 0 0 chrX 124127330 124127355 -38472575 + GC_rich Low_complexity Low_complexity 1 25 0 682 228 146 0 chrX 124135342 124135500 -38464430 - MER5A DNA MER1_type 0 189 9 382 301 153 6 chrX 124137127 124137290 -38462640 + MER5A DNA MER1_type 1 187 -2 234 298 0 0 chrX 124137336 124137383 -38462547 - L2 LINE L2 -16 3297 3251 732 277 21 29 chrX 124137761 124137999 -38461931 - MIR SINE MIR 0 262 27 239 200 29 86 chrX 124138014 124138084 -38461846 - Charlie8 DNA MER1_type -1003 1414 1349 594 274 59 16 chrX 124139603 124139789 -38460141 + MIR3 SINE MIR 2 195 -13 2201 105 10 0 chrX 124139792 124140088 -38459842 + AluSx SINE Alu 3 301 -11 922 171 5 47 chrX 124140317 124140510 -38459420 + MIR SINE MIR 58 242 -20 719 257 74 15 chrX 124140786 124140988 -38458942 + MIR SINE MIR 36 249 -13 189 0 0 0 chrX 124141821 124141842 -38458088 + (T)n Simple_repeat Simple_repeat 1 21 0 437 246 0 55 chrX 124142033 124142143 -38457787 - MIR SINE MIR -67 141 38 406 333 62 11 chrX 124142424 124142601 -38457329 - MIR3 SINE MIR -2 206 21 290 274 18 9 chrX 124142892 124143005 -38456925 - L1ME4a LINE L1 -196 5925 5812 182 128 26 0 chrX 124143065 124143104 -38456826 + (TA)n Simple_repeat Simple_repeat 1 40 0 444 82 0 0 chrX 124143131 124143192 -38456738 + (CA)n Simple_repeat Simple_repeat 2 62 0 628 283 94 5 chrX 124143443 124143634 -38456296 + MIR SINE MIR 2 209 -53 649 267 15 45 chrX 124143686 124143888 -38456042 + MIR SINE MIR 21 216 -46 566 269 77 0 chrX 124144036 124144192 -38455738 - MIR3 SINE MIR -6 202 35 484 229 119 9 chrX 124145888 124145997 -38453933 + MIR3 SINE MIR 68 188 -20 492 278 157 16 chrX 124146330 124146521 -38453409 + MIR SINE MIR 24 241 -21 243 281 173 22 chrX 124147658 124147786 -38452144 - MIR SINE MIR -65 143 26 751 184 104 6 chrX 124148359 124148522 -38451408 - MER97c DNA MER1_type? -911 179 1 816 244 128 8 chrX 124149831 124150065 -38449865 - MIR SINE MIR 0 262 1 343 309 218 12 chrX 124150799 124150964 -38448966 + MIR3 SINE MIR 4 202 -6 259 232 0 29 chrX 124151184 124151253 -38448677 - MIR3 SINE MIR 0 208 142 610 251 62 24 chrX 124151662 124151878 -38448052 + MIR SINE MIR 6 225 -37 249 57 0 0 chrX 124152527 124152562 -38447368 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 401 347 89 18 chrX 124152686 124153023 -38446907 + L2 LINE L2 1690 2050 -1264 432 244 8 57 chrX 124153051 124153174 -38446756 + MIR3 SINE MIR 85 201 -7 273 246 0 0 chrX 124154342 124154403 -38445527 + CT-rich Low_complexity Low_complexity 5 65 0 467 264 16 8 chrX 124155317 124155438 -38444492 - MIR SINE MIR -34 228 107 1949 134 58 33 chrX 124155452 124155781 -38444149 + MER1B DNA MER1_type 1 337 0 865 296 21 8 chrX 124155853 124156096 -38443834 - MIR SINE MIR -7 255 10 349 291 169 40 chrX 124156525 124156673 -38443257 + MER5A DNA MER1_type 22 188 -1 322 257 28 9 chrX 124157214 124157323 -38442607 - MER103 DNA DNA -45 121 11 253 270 40 0 chrX 124157412 124157486 -38442444 + MER5A DNA MER1_type 63 139 -50 521 266 36 7 chrX 124157803 124157942 -38441988 + MIR SINE MIR 64 206 -56 1005 17 0 0 chrX 124160987 124161135 -38438795 - AluY SINE Alu 0 317 170 316 344 63 11 chrX 124163183 124163372 -38436558 + MIR SINE MIR 20 218 -44 308 227 148 11 chrX 124163450 124163538 -38436392 - MIR SINE MIR -10 252 153 180 184 53 0 chrX 124164239 124164277 -38435653 - MIR SINE MIR -62 146 107 301 296 17 35 chrX 124164732 124164847 -38435083 + L2 LINE L2 3159 3271 -1 726 264 11 11 chrX 124165115 124165293 -38434637 - MER5B DNA MER1_type 0 178 1 233 214 0 0 chrX 124165293 124165333 -38434597 + L3 LINE CR1 1526 1565 -12 424 300 193 35 chrX 124166526 124166926 -38433004 + L2 LINE L2 1848 2310 -1004 260 361 26 45 chrX 124166966 124167235 -38432695 + L2 LINE L2 2596 2859 -455 34 72 0 0 chrX 124167280 124167349 -38432581 + AT_rich Low_complexity Low_complexity 1 69 0 268 355 98 38 chrX 124167354 124167537 -38432393 + L2 LINE L2 2898 3091 -181 752 271 133 0 chrX 124167641 124167844 -38432086 + MIR SINE MIR 29 258 -4 248 343 14 0 chrX 124167845 124167918 -38432012 + L2 LINE L2 3199 3272 0 327 113 0 0 chrX 124168713 124168766 -38431164 + (CAT)n Simple_repeat Simple_repeat 2 54 0 224 286 40 103 chrX 124169807 124169933 -38429997 + L2 LINE L2 3155 3272 0 258 159 0 0 chrX 124170052 124170096 -38429834 - L2 LINE L2 -6 3307 3264 233 286 262 0 chrX 124171648 124171774 -38428156 - MIR3 SINE MIR -15 193 35 257 256 13 39 chrX 124172378 124172456 -38427474 + MIR SINE MIR 186 261 -1 291 294 24 12 chrX 124173227 124173312 -38426618 - L2 LINE L2 -1 3271 3186 571 289 59 0 chrX 124173797 124173949 -38425981 - MIR3 SINE MIR -8 200 40 253 204 19 0 chrX 124173972 124174026 -38425904 - L2 LINE L2 -2 3311 3257 1202 142 23 5 chrX 124174958 124175177 -38424753 + L1MB3 LINE L1 5959 6181 -2 453 114 0 0 chrX 124175199 124175269 -38424661 + L1MA2 LINE L1 6235 6304 0 461 319 56 0 chrX 124175344 124175488 -38424442 - MIR SINE MIR -39 223 72 412 297 10 10 chrX 124175526 124175627 -38424303 + L2 LINE L2 3204 3304 -9 189 309 91 0 chrX 124175620 124175675 -38424255 - MIR SINE MIR -190 72 13 * 433 237 54 0 chrX 124175911 124176004 -38423926 + MIR SINE MIR 52 149 -113 193 152 0 0 chrX 124176002 124176035 -38423895 + MIR SINE MIR 98 130 -78 * 214 250 57 65 chrX 124179168 124179292 -38420638 - MIR SINE MIR -56 206 84 280 373 54 16 chrX 124179596 124179781 -38420149 - L2 LINE L2 -214 3058 2867 683 195 45 63 chrX 124181033 124181254 -38418676 + MER112 DNA MER1_type 38 254 -6 220 265 163 0 chrX 124181509 124181558 -38418372 + L2 LINE L2 3201 3257 -15 371 206 144 0 chrX 124182279 124182376 -38417554 + MER3 DNA MER1_type 14 124 -85 2335 283 61 47 chrX 124183643 124184010 -38415920 + L3 LINE CR1 600 960 -617 273 57 0 0 chrX 124184010 124184045 -38415885 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2335 283 61 47 chrX 124184045 124184639 -38415291 + L3 LINE CR1 960 1575 -2 318 268 72 20 chrX 124185254 124185408 -38414522 - MIR SINE MIR -64 198 44 27 0 0 0 chrX 124185425 124185452 -38414478 + AT_rich Low_complexity Low_complexity 1 27 0 526 252 88 6 chrX 124185468 124185627 -38414303 - MIR SINE MIR -17 245 74 * 1032 304 119 35 chrX 124185624 124186362 -38413568 + L2 LINE L2 2517 3313 0 1032 184 9 40 chrX 124187159 124187382 -38412548 + MER20 DNA MER1_type 4 219 0 664 361 84 43 chrX 124187537 124188319 -38411611 - L2 LINE L2 -655 2659 1846 514 229 223 11 chrX 124188497 124188672 -38411258 + L3 LINE CR1 1344 1555 -22 1870 214 35 49 chrX 124188773 124189282 -38410648 - MLT1D LTR MaLR 0 505 4 240 163 0 20 chrX 124189554 124189603 -38410327 + MIR3 SINE MIR 153 200 -8 723 178 61 37 chrX 124190437 124190600 -38409330 + L2 LINE L2 3143 3309 -4 681 273 68 32 chrX 124190601 124190850 -38409080 - MIR SINE MIR -3 259 2 399 284 0 10 chrX 124190850 124190952 -38408978 - MIR SINE MIR -142 120 20 2504 84 0 0 chrX 124191049 124191359 -38408571 + AluSp SINE Alu 1 310 -3 209 274 0 0 chrX 124191683 124191734 -38408196 + MIR SINE MIR 83 133 -75 860 111 111 6 chrX 124193277 124193448 -38406482 - MER53 DNA DNA 0 189 1 467 321 115 14 chrX 124193505 124193723 -38406207 + MIR SINE MIR 22 261 -1 2190 73 0 17 chrX 124193962 124194272 -38405658 - AluSc SINE Alu 0 309 8 202 277 0 0 chrX 124196458 124196505 -38403425 - MIR SINE MIR -102 160 114 202 320 175 0 chrX 124196473 124196570 -38403360 - MIR SINE MIR -62 146 33 288 20 61 0 chrX 124196674 124196723 -38403207 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 235 209 0 0 chrX 124196736 124196779 -38403151 + 5S rRNA rRNA 1 43 -78 356 224 193 68 chrX 124197277 124197438 -38402492 + MIR3 SINE MIR 27 207 -1 243 339 65 48 chrX 124198586 124198754 -38401176 + L2 LINE L2 2895 3065 -248 1269 287 105 40 chrX 124198775 124199623 -38400307 - L2 LINE L2 -55 3258 2363 369 238 7 26 chrX 124199903 124200054 -38399876 + GA-rich Low_complexity Low_complexity 3 150 0 27 29 0 0 chrX 124200192 124200226 -38399704 + AT_rich Low_complexity Low_complexity 1 34 0 213 141 26 0 chrX 124201942 124201983 -38397947 + CT-rich Low_complexity Low_complexity 2 80 0 204 158 0 0 chrX 124202038 124202076 -38397854 + (CA)n Simple_repeat Simple_repeat 2 39 0 565 273 54 64 chrX 124202148 124202374 -38397556 - MIR SINE MIR -6 256 3 422 263 205 6 chrX 124202386 124202557 -38397373 - L3 LINE CR1 -317 1260 1056 1121 72 0 6 chrX 124202937 124203103 -38396827 + (GAAA)n Simple_repeat Simple_repeat 1 165 0 245 283 20 61 chrX 124204723 124204822 -38395108 + MIR SINE MIR 168 262 0 701 106 197 101 chrX 124204842 124205030 -38394900 + MER20 DNA MER1_type 1 206 -13 184 237 31 113 chrX 124205275 124205372 -38394558 - L2 LINE L2 -173 3099 3011 3060 158 15 18 chrX 124206825 124207370 -38392560 - MER67A LTR ERV1 0 543 1 544 188 26 26 chrX 124207443 124207560 -38392370 + MIR3 SINE MIR 40 156 -52 290 313 74 68 chrX 124207563 124207726 -38392204 - L2 LINE L2 -2 3270 3107 2660 133 7 27 chrX 124207775 124208218 -38391712 - Tigger2a DNA MER2_type 0 434 1 236 330 183 44 chrX 124208731 124209410 -38390520 + L2 LINE L2 2205 2977 -337 266 252 152 33 chrX 124209511 124209662 -38390268 + L2 LINE L2 3103 3271 -42 207 191 0 0 chrX 124211003 124211050 -38388880 + (TAA)n Simple_repeat Simple_repeat 1 47 0 491 268 92 24 chrX 124211775 124211939 -38387991 + MIR SINE MIR 86 260 -2 731 191 133 11 chrX 124213170 124213358 -38386572 + MIR SINE MIR 50 260 -2 417 286 19 26 chrX 124213920 124214051 -38385879 - MIR SINE MIR -64 144 30 666 274 30 22 chrX 124214175 124214432 -38385498 - MIR SINE MIR -7 255 1 416 270 50 108 chrX 124215870 124216111 -38383819 - MIR SINE MIR -34 228 2 837 154 55 16 chrX 124216633 124216815 -38383115 - MER53 DNA DNA 0 189 1 314 162 14 0 chrX 124217654 124217728 -38382202 + (TAA)n Simple_repeat Simple_repeat 2 76 0 878 261 111 4 chrX 124217731 124217965 -38381965 - MIR SINE MIR 0 262 4 316 360 90 21 chrX 124218272 124218505 -38381425 + L2 LINE L2 2957 3205 -67 476 254 159 8 chrX 124218550 124218676 -38381254 - MIR3 SINE MIR -48 160 16 693 336 32 5 chrX 124219040 124219257 -38380673 - MIR SINE MIR -24 238 16 883 157 5 97 chrX 124219385 124219602 -38380328 - MER3 DNA MER1_type -10 199 3 31 26 0 0 chrX 124219637 124219675 -38380255 + AT_rich Low_complexity Low_complexity 1 38 0 1634 80 4 0 chrX 124219675 124219900 -38380030 - L1MA1 LINE L1 -9 6293 6068 206 333 153 2 chrX 124220249 124220394 -38379536 + MIR SINE MIR 34 143 -65 220 264 153 0 chrX 124220410 124220482 -38379448 - MER5B DNA MER1_type -95 83 1 * 293 139 0 0 chrX 124220482 124220522 -38379408 + MIR3 SINE MIR 153 192 -16 4470 146 2 1 chrX 124220859 124221637 -38378293 - L1 LINE L1 -883 5263 4482 1790 156 44 32 chrX 124221637 124222047 -38377883 + L1MA8 LINE L1 5872 6286 -5 235 245 151 0 chrX 124223485 124223538 -38376392 - MIR SINE MIR -60 148 88 1020 184 0 17 chrX 124224539 124224718 -38375212 - MER5A DNA MER1_type -12 177 2 1972 156 0 0 chrX 124225169 124225457 -38374473 + AluSx SINE Alu 1 288 -24 30316 107 6 57 chrX 124225498 124231974 -38367956 + L1PA7 LINE L1 12 6152 -2 23 54 0 0 chrX 124231974 124232011 -38367919 + AT_rich Low_complexity Low_complexity 1 37 0 309 305 8 53 chrX 124232011 124232142 -38367788 + MER5A DNA MER1_type 64 188 -1 387 0 0 0 chrX 124233132 124233175 -38366755 + (TG)n Simple_repeat Simple_repeat 2 44 0 946 154 82 0 chrX 124233928 124234110 -38365820 + L1PA16 LINE L1 5961 6157 -9 398 222 72 40 chrX 124234249 124234422 -38365508 - MLT1L LTR MaLR -341 170 3 261 237 17 17 chrX 124234454 124234513 -38365417 - L2 LINE L2 -10 3262 3204 620 206 58 19 chrX 124236286 124236441 -38363489 - MIR SINE MIR 0 262 102 349 196 109 0 chrX 124236510 124236602 -38363328 + MLT1K LTR MaLR 485 586 -2 963 256 29 29 chrX 124236609 124236855 -38363075 - MIR SINE MIR -10 252 7 307 333 9 19 chrX 124238727 124238832 -38361098 - MIR SINE MIR -89 119 16 575 193 193 0 chrX 124239618 124239765 -38360165 + MER5A DNA MER1_type 4 183 -6 323 302 9 9 chrX 124240064 124240168 -38359762 - MIR SINE MIR 0 262 159 413 305 0 0 chrX 124240168 124240263 -38359667 + MIR SINE MIR 4 98 -164 11039 148 12 14 chrX 124240265 124243067 -38356863 - L1PA13 LINE L1 -3 6160 3368 4146 179 19 3 chrX 124243069 124243168 -38356762 - L1PA13 LINE L1 -2875 3271 3175 284 0 28 0 chrX 124243168 124243204 -38356726 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4146 179 19 3 chrX 124243204 124243975 -38355955 - L1PA13 LINE L1 -2971 3175 2387 753 239 19 0 chrX 124243975 124244134 -38355796 + MIR SINE MIR 93 254 -8 579 300 19 19 chrX 124244114 124244274 -38355656 - MIR SINE MIR -86 176 17 * 378 262 46 22 chrX 124244790 124244925 -38355005 + MIR3 SINE MIR 48 190 -18 353 262 103 41 chrX 124244995 124245140 -38354790 + MIR SINE MIR 20 173 -89 255 61 0 0 chrX 124246752 124246785 -38353145 + (CAA)n Simple_repeat Simple_repeat 1 33 0 418 293 9 0 chrX 124246867 124246973 -38352957 + MIR3 SINE MIR 96 202 -6 288 146 0 0 chrX 124248926 124248967 -38350963 - L2 LINE L2 -16 3256 3216 621 202 138 21 chrX 124250770 124250934 -38348996 - MER5A DNA MER1_type 0 189 4 1783 124 87 7 chrX 124251648 124251923 -38348007 + AluSx SINE Alu 1 297 -15 2057 144 7 0 chrX 124253268 124253567 -38346363 + AluSx SINE Alu 3 303 -9 261 83 0 0 chrX 124253641 124253677 -38346253 - MIR SINE MIR -64 144 109 296 295 93 0 chrX 124254520 124254659 -38345271 + MIR SINE MIR 110 261 -1 334 278 113 0 chrX 124255433 124255530 -38344400 + MIR3 SINE MIR 94 201 -7 184 159 145 14 chrX 124255593 124255662 -38344268 + L2 LINE L2 777 854 -2460 28 0 0 0 chrX 124257003 124257031 -38342899 + AT_rich Low_complexity Low_complexity 1 28 0 974 120 0 0 chrX 124258439 124258572 -38341358 + FLAM_C SINE Alu 1 133 0 1253 285 81 7 chrX 124258726 124259294 -38340636 + L1ME4a LINE L1 5265 5874 -247 2196 127 3 22 chrX 124259320 124259475 -38340455 + MER7A DNA MER2_type 1 158 -2880 2699 85 6 0 chrX 124259475 124259828 -38340102 - THE1A LTR MaLR 0 355 1 12031 81 13 1 chrX 124259828 124261390 -38338540 - THE1A-int LTR MaLR 0 1580 1 2575 99 3 3 chrX 124261390 124261745 -38338185 - THE1A LTR MaLR 0 355 1 2196 127 3 22 chrX 124261745 124261942 -38337988 + MER7A DNA MER2_type 155 346 0 412 320 11 22 chrX 124262428 124262606 -38337324 - MER5B DNA MER1_type 0 178 3 349 244 24 73 chrX 124263271 124263394 -38336536 + MER96 DNA MER1_type? 59 175 0 255 290 43 0 chrX 124263398 124263467 -38336463 + MIR SINE MIR 48 119 -89 787 313 28 10 chrX 124264286 124264574 -38335356 - LTR16A LTR ERVL -15 435 143 315 285 128 77 chrX 124265631 124265968 -38333962 - L1ME4a LINE L1 0 6121 5768 21 0 0 0 chrX 124265973 124265994 -38333936 + AT_rich Low_complexity Low_complexity 1 21 0 1022 327 107 8 chrX 124266323 124266791 -38333139 + L3 LINE CR1 861 1374 -203 234 150 0 0 chrX 124268915 124268955 -38330975 + (A)n Simple_repeat Simple_repeat 1 40 0 190 269 19 0 chrX 124269361 124269413 -38330517 - L2 LINE L2 0 3313 3261 1290 116 0 0 chrX 124269530 124269703 -38330227 + AluSg/x SINE Alu 102 274 -38 189 179 15 30 chrX 124270141 124270208 -38329722 + GA-rich Low_complexity Low_complexity 3 68 0 369 227 63 19 chrX 124270685 124270800 -38329130 + MIR SINE MIR 64 180 -62 440 288 144 0 chrX 124271120 124271231 -38328699 + L2 LINE L2 3146 3272 0 261 250 60 20 chrX 124272017 124272117 -38327813 - MER113 DNA MER1_type? -109 412 309 735 214 214 0 chrX 124272513 124272705 -38327225 + MIR SINE MIR 2 234 -28 342 262 59 81 chrX 124272706 124272953 -38326977 - MIR3 SINE MIR -14 248 3 906 258 30 9 chrX 124273041 124273274 -38326656 + L3b LINE CR1 1102 1339 -244 587 316 34 17 chrX 124274273 124274510 -38325420 + MIR SINE MIR 10 250 -12 619 231 118 94 chrX 124274863 124275118 -38324812 - MIR SINE MIR 0 262 2 373 279 184 19 chrX 124277268 124277426 -38322504 + MIR3 SINE MIR 17 200 -8 22 35 0 0 chrX 124279154 124279183 -38320747 + AT_rich Low_complexity Low_complexity 1 29 0 206 330 134 0 chrX 124279276 124279373 -38320557 + MIR SINE MIR 31 140 -68 2228 85 0 4 chrX 124281092 124281395 -38318535 - AluSg SINE Alu 0 302 1 292 323 34 114 chrX 124281974 124282237 -38317693 - L2 LINE L2 -62 3210 2969 428 285 73 7 chrX 124282506 124282643 -38317287 - MIR SINE MIR -60 148 3 540 211 32 24 chrX 124283091 124283214 -38316716 + L2 LINE L2 3190 3313 0 290 231 29 115 chrX 124284489 124284593 -38315337 - MIR SINE MIR -90 172 78 718 332 0 21 chrX 124285531 124285766 -38314164 + MIR SINE MIR 28 257 -5 420 82 0 0 chrX 124286103 124286164 -38313766 + (GA)n Simple_repeat Simple_repeat 2 62 0 498 167 60 0 chrX 124286213 124286297 -38313633 - AluJ SINE Alu -39 273 185 348 119 17 0 chrX 124286297 124286356 -38313574 - AluJ SINE Alu -157 145 86 190 234 13 65 chrX 124286358 124286435 -38313495 - L2 LINE L2 -15 3257 3185 599 306 70 16 chrX 124286450 124286692 -38313238 - MIR SINE MIR -6 256 2 613 286 70 16 chrX 124286793 124287220 -38312710 + LTR16C LTR ERVL 1 491 0 337 262 116 29 chrX 124287434 124287606 -38312324 - MER5A DNA MER1_type -2 187 1 504 0 0 0 chrX 124287985 124288041 -38311889 + (CA)n Simple_repeat Simple_repeat 2 57 0 298 263 21 21 chrX 124288371 124288466 -38311464 - L2 LINE L2 -216 3056 2962 725 276 94 0 chrX 124288516 124288719 -38311211 - MIR SINE MIR -39 223 2 549 167 31 0 chrX 124288726 124288822 -38311108 - MIR SINE MIR -106 156 58 526 308 29 6 chrX 124289230 124289402 -38310528 + L2 LINE L2 3092 3267 -5 548 188 86 8 chrX 124289477 124289594 -38310336 + MER63 DNA MER1_type 1 752 -84 341 161 0 0 chrX 124289594 124289650 -38310280 + MER63 DNA MER1_type 978 1033 -28 182 372 47 23 chrX 124290228 124290314 -38309616 - MIR SINE MIR -155 107 20 400 197 51 0 chrX 124291638 124291755 -38308175 - MER113 DNA MER1_type? -398 123 1 2441 71 3 0 chrX 124294631 124294925 -38305005 - AluSp SINE Alu -18 295 1 252 274 137 0 chrX 124294991 124295064 -38304866 - MIR SINE MIR -124 138 56 456 51 0 0 chrX 124295563 124295622 -38304308 + (CA)n Simple_repeat Simple_repeat 1 59 0 193 234 130 39 chrX 124295700 124295777 -38304153 + L2 LINE L2 3015 3098 -174 909 235 50 29 chrX 124295844 124296082 -38303848 + MIR SINE MIR 20 262 0 651 204 70 8 chrX 124296171 124296337 -38303593 + MER69A DNA AcHobo 1 177 0 1016 167 57 5 chrX 124296676 124296868 -38303062 - MER20 DNA MER1_type -1 218 17 21 104 0 0 chrX 124298349 124298426 -38301504 + AT_rich Low_complexity Low_complexity 1 77 0 423 237 0 0 chrX 124298794 124298908 -38301022 + CT-rich Low_complexity Low_complexity 2 115 0 377 306 0 36 chrX 124299246 124299357 -38300573 + MIR3 SINE MIR 7 113 -95 720 297 56 28 chrX 124299430 124299821 -38300109 - LTR16B LTR ERVL -12 452 51 803 150 0 0 chrX 124299978 124300111 -38299819 - L1MA3 LINE L1 0 6305 6173 225 119 0 0 chrX 124300607 124300649 -38299281 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 274 305 114 8 chrX 124301520 124301651 -38298279 + MIR3 SINE MIR 16 160 -48 414 225 0 9 chrX 124301831 124301942 -38297988 - MER113 DNA MER1_type? -409 112 3 187 79 53 0 chrX 124302259 124302297 -38297633 + A-rich Low_complexity Low_complexity 4 43 0 264 232 39 106 chrX 124302591 124302732 -38297198 - MIR SINE MIR -41 167 61 2163 105 0 48 chrX 124302946 124303259 -38296671 + AluSg SINE Alu 1 298 -12 207 0 0 0 chrX 124303379 124303402 -38296528 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 432 0 0 0 chrX 124303401 124303449 -38296481 + (CA)n Simple_repeat Simple_repeat 1 48 0 1028 213 124 10 chrX 124304364 124304655 -38295275 - MER5C DNA MER1_type 0 324 1 565 307 173 19 chrX 124304815 124305201 -38294729 - L2 LINE L2 -169 3144 2698 236 184 0 0 chrX 124305210 124305259 -38294671 + L1MB7 LINE L1 6127 6175 -9 189 0 0 0 chrX 124305272 124305293 -38294637 + (GA)n Simple_repeat Simple_repeat 2 22 0 269 294 191 29 chrX 124305324 124305460 -38294470 + L2 LINE L2 3104 3261 -11 4463 136 30 12 chrX 124307015 124307788 -38292142 + L1MA7 LINE L1 5494 6280 -11 22 0 0 0 chrX 124307791 124307813 -38292117 + AT_rich Low_complexity Low_complexity 1 22 0 446 352 56 25 chrX 124307934 124308215 -38291715 - L2 LINE L2 -420 2894 2605 204 317 134 0 chrX 124308215 124308297 -38291633 - MER5B DNA MER1_type 0 178 86 2584 74 72 91 chrX 124308377 124308852 -38291078 - MER41A LTR ERV1 -88 466 1 2797 97 5 24 chrX 124308852 124309277 -38290653 - MER41A-int LTR ERV1 -2 5944 5528 25 0 0 0 chrX 124309830 124309855 -38290075 + AT_rich Low_complexity Low_complexity 1 25 0 2292 119 0 0 chrX 124309972 124310282 -38289648 - AluSx SINE Alu -2 310 1 198 0 0 0 chrX 124310291 124310313 -38289617 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 225 105 0 0 chrX 124311893 124311931 -38287999 - HY3 scRNA scRNA -2 99 62 243 0 0 0 chrX 124313217 124313244 -38286686 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 240 109 36 18 chrX 124313279 124313334 -38286596 + L1MC4 LINE L1 6648 6703 -1339 * 8589 144 21 15 chrX 124313308 124315419 -38284511 - L1MA2 LINE L1 -10 6294 4171 10150 54 3 1 chrX 124315419 124317458 -38282472 - L1PA6 LINE L1 0 6154 4093 8589 144 21 15 chrX 124317458 124318012 -38281918 - L1MA2 LINE L1 -2133 4171 3622 2485 50 0 7 chrX 124319479 124319781 -38280149 - AluY SINE Alu -11 300 1 2179 114 3 7 chrX 124320958 124321257 -38278673 - AluSx SINE Alu -14 298 1 7514 30 2 2 chrX 124322191 124323525 -38276405 - L1PA4 LINE L1 -2 6153 4819 3280 119 14 0 chrX 124325694 124326214 -38273716 - L1MA4A LINE L1 -6 6999 6473 5708 110 13 3 chrX 124326248 124326888 -38273042 - L1PA13 LINE L1 -2 6161 5529 2266 87 14 0 chrX 124326888 124327176 -38272754 + AluSx SINE Alu 1 292 -20 5708 110 13 3 chrX 124327176 124328353 -38271577 - L1PA13 LINE L1 -634 5529 4334 14960 173 27 17 chrX 124328354 124330795 -38269135 - L1MA4A LINE L1 -526 6479 4063 2047 138 3 3 chrX 124330795 124331091 -38268839 - AluSx SINE Alu -16 296 1 14960 173 27 17 chrX 124331091 124332220 -38267710 - L1MA4A LINE L1 -2942 4063 2946 2280 85 7 3 chrX 124332220 124332551 -38267379 - AluY SINE Alu 0 311 1 14960 173 27 17 chrX 124332551 124332962 -38266968 - L1MA4A LINE L1 -4059 2946 2540 261 0 0 0 chrX 124332962 124332991 -38266939 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 14960 173 27 17 chrX 124332991 124335388 -38264542 - L1MA4A LINE L1 -4465 2540 4 337 200 0 35 chrX 124335869 124335954 -38263976 + L1ME3A LINE L1 6080 6161 -9 261 147 279 0 chrX 124336009 124336077 -38263853 + L1ME2 LINE L1 6068 6154 -10 259 235 142 33 chrX 124336133 124336316 -38263614 + L1MC5 LINE L1 7722 7924 -37 2088 89 0 18 chrX 124336627 124336908 -38263022 + AluSx SINE Alu 3 278 -34 336 120 0 0 chrX 124336908 124336958 -38262972 + Alu SINE Alu 245 294 -6 864 129 57 0 chrX 124338605 124338789 -38261141 + AluSg/x SINE Alu 137 328 0 228 226 38 19 chrX 124339490 124339543 -38260387 - L2 LINE L2 -24 3248 3195 284 190 0 52 chrX 124343234 124343292 -38256638 - L2 LINE L2 -3 3310 3256 366 336 82 0 chrX 124343477 124343599 -38256331 - L2 LINE L2 -4 3268 3137 501 270 40 124 chrX 124344868 124345142 -38254788 - MIR SINE MIR -4 258 8 21 0 0 0 chrX 124345505 124345526 -38254404 + AT_rich Low_complexity Low_complexity 1 21 0 384 226 55 85 chrX 124346394 124346547 -38253383 + MIR SINE MIR 36 182 -58 243 358 55 9 chrX 124346747 124346856 -38253074 - L2 LINE L2 -5 3267 3154 596 351 154 44 chrX 124347708 124348513 -38251417 + L2 LINE L2 2360 3272 0 242 268 188 9 chrX 124349472 124349584 -38250346 + L2 LINE L2 3141 3272 0 330 115 0 0 chrX 124349659 124349711 -38250219 + (CTA)n Simple_repeat Simple_repeat 2 53 0 825 276 47 28 chrX 124349716 124349901 -38250029 - MIR SINE MIR -2 260 67 2053 132 21 60 chrX 124349901 124350281 -38249649 - MLT1A1 LTR MaLR 0 365 1 825 276 47 28 chrX 124350281 124350349 -38249581 - MIR SINE MIR -195 67 2 2112 134 3 16 chrX 124350495 124350809 -38249121 - AluSx SINE Alu 0 312 3 496 106 0 11 chrX 124354870 124354899 -38245031 + L1P LINE L1 5278 5306 -855 575 106 0 0 chrX 124354899 124354984 -38244946 - L1PA15 LINE L1 -9 6156 6072 496 106 0 11 chrX 124354984 124355059 -38244871 + L1P LINE L1 5306 5378 -783 342 0 0 0 chrX 124356078 124356116 -38243814 + (A)n Simple_repeat Simple_repeat 1 38 0 408 259 129 17 chrX 124356839 124356955 -38242975 - MER5A DNA MER1_type 0 189 61 6128 44 3 0 chrX 124356968 124357748 -38242182 - L1PA6 LINE L1 0 6154 5373 390 206 0 0 chrX 124357753 124357821 -38242109 - MER5A DNA MER1_type -121 68 1 234 324 113 40 chrX 124357821 124358147 -38241783 - L2 LINE L2 -1656 1658 1309 213 258 45 11 chrX 124358174 124358263 -38241667 - L2 LINE L2 -936 2378 2287 435 164 34 185 chrX 124358289 124358435 -38241495 + L2 LINE L2 3185 3308 -5 679 238 11 2 chrX 124358545 124358723 -38241207 + MIR SINE MIR 36 257 -5 3170 175 27 32 chrX 124360836 124361671 -38238259 + L1MB7 LINE L1 5019 5840 -344 2395 86 0 3 chrX 124361671 124361972 -38237958 + AluSq SINE Alu 1 300 -13 3170 175 27 32 chrX 124361972 124362141 -38237789 + L1MB7 LINE L1 5840 6008 -176 577 164 171 0 chrX 124362209 124362355 -38237575 - MER96B DNA MER1_type? -246 171 1 636 200 38 6 chrX 124362358 124362518 -38237412 + L1MB7 LINE L1 6006 6170 -14 653 198 124 6 chrX 124363447 124363624 -38236306 + MER112 DNA MER1_type 1 198 -62 482 225 120 50 chrX 124364271 124364471 -38235459 - MIR SINE MIR -41 221 8 509 248 99 7 chrX 124365099 124365240 -38234690 + MIR SINE MIR 8 161 -101 195 171 86 0 chrX 124365227 124365262 -38234668 + L2 LINE L2 3258 3295 -18 * 22 0 0 0 chrX 124366394 124366416 -38233514 + AT_rich Low_complexity Low_complexity 1 22 0 619 178 31 80 chrX 124367824 124367987 -38231943 + MIR SINE MIR 108 262 0 463 201 30 146 chrX 124368967 124369131 -38230799 - MER5B DNA MER1_type -33 145 1 456 230 250 7 chrX 124369142 124369290 -38230640 + MER5A DNA MER1_type 1 184 -5 838 174 60 0 chrX 124369822 124369989 -38229941 - MER5B DNA MER1_type 0 178 2 21 0 0 0 chrX 124370070 124370091 -38229839 + AT_rich Low_complexity Low_complexity 1 21 0 627 167 0 50 chrX 124370119 124370239 -38229691 + FLAM_A SINE Alu 13 126 -16 584 307 0 0 chrX 124370902 124371055 -38228875 + MIR3 SINE MIR 37 189 -19 2031 129 4 0 chrX 124373248 124373558 -38226372 + AluSg SINE Alu 1 311 0 285 29 0 0 chrX 124373568 124373602 -38226328 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chrX 124374637 124374665 -38225265 + AT_rich Low_complexity Low_complexity 1 28 0 273 260 0 0 chrX 124377815 124377865 -38222065 - L2 LINE L2 -76 3196 3147 254 301 58 19 chrX 124377954 124378057 -38221873 - MIR SINE MIR -67 141 35 1141 81 19 0 chrX 124378583 124378744 -38221186 + L1PA10 LINE L1 6005 6168 0 238 0 81 0 chrX 124378843 124378880 -38221050 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 949 295 63 49 chrX 124379723 124380150 -38219780 - L2 LINE L2 -19 3294 2862 597 309 18 0 chrX 124380133 124380298 -38219632 - L2 LINE L2 -707 2607 2440 * 335 103 86 0 chrX 124380447 124380505 -38219425 - L1MB8 LINE L1 -14 6164 6102 2675 146 87 9 chrX 124380524 124381066 -38218864 - L1MB4 LINE L1 0 6180 5597 2066 99 59 0 chrX 124381074 124381347 -38218583 - AluSg SINE Alu -18 292 4 197 318 45 55 chrX 124381762 124381872 -38218058 + L3b LINE CR1 1458 1566 -17 26 64 0 0 chrX 124382099 124382146 -38217784 + AT_rich Low_complexity Low_complexity 1 47 0 362 203 0 0 chrX 124382171 124382245 -38217685 + L1MA7 LINE L1 5827 5900 -391 6293 86 28 5 chrX 124382340 124383480 -38216450 - L1PA14 LINE L1 0 6161 5008 225 0 0 0 chrX 124384367 124384392 -38215538 + (CA)n Simple_repeat Simple_repeat 2 26 0 1026 301 62 6 chrX 124384833 124385170 -38214760 + L3 LINE CR1 1185 1541 -36 358 324 39 50 chrX 124385170 124385352 -38214578 - MER5A DNA MER1_type 0 189 10 209 161 0 0 chrX 124387333 124387364 -38212566 + polypyrimidine Low_complexity Low_complexity 4 34 0 1359 111 0 0 chrX 124389646 124389817 -38210113 + AluSx SINE Alu 1 171 -141 236 53 26 0 chrX 124389823 124389861 -38210069 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1026 148 48 5 chrX 124391103 124391292 -38208638 - MER3 DNA MER1_type 0 209 13 781 293 54 5 chrX 124391413 124391635 -38208295 - MIR SINE MIR -17 245 13 387 212 233 14 chrX 124392584 124392730 -38207200 - MIR SINE MIR -4 258 81 241 398 8 25 chrX 124392958 124393076 -38206854 + MIR3 SINE MIR 4 119 -89 210 351 18 0 chrX 124393095 124393152 -38206778 + MIR SINE MIR 21 78 -184 * 1769 249 126 50 chrX 124393145 124393764 -38206166 - L2 LINE L2 0 3313 2592 1844 161 6 19 chrX 124393764 124394080 -38205850 + AluJo SINE Alu 1 312 0 1769 249 126 50 chrX 124394080 124394462 -38205468 - L2 LINE L2 -721 2592 2240 488 302 59 0 chrX 124394461 124394630 -38205300 + MIR SINE MIR 76 254 -8 * 371 233 198 9 chrX 124394700 124394816 -38205114 + MER5B DNA MER1_type 7 144 -34 5271 33 2 5 chrX 124395468 124396099 -38203831 + L1PA5 LINE L1 5526 6154 0 279 0 0 0 chrX 124396164 124396195 -38203735 + (CA)n Simple_repeat Simple_repeat 2 32 0 1042 194 52 36 chrX 124396750 124397002 -38202928 + MIR SINE MIR 6 261 -1 1039 198 53 5 chrX 124397044 124397251 -38202679 - MER20 DNA MER1_type 0 219 3 225 291 18 0 chrX 124398395 124398450 -38201480 + MIR SINE MIR 46 101 -107 185 239 0 0 chrX 124398644 124398690 -38201240 + MIR SINE MIR 102 147 -115 350 179 71 62 chrX 124398692 124398804 -38201126 - L2 LINE L2 0 3313 3201 220 243 149 14 chrX 124398785 124398859 -38201071 + MIR SINE MIR 155 238 -24 * 772 334 31 25 chrX 124400367 124400693 -38199237 + L3 LINE CR1 1009 1336 -241 402 336 24 0 chrX 124400709 124400834 -38199096 - L2 LINE L2 0 3272 3145 469 286 162 54 chrX 124400914 124401155 -38198775 + L3 LINE CR1 1309 1575 -2 651 244 163 19 chrX 124401596 124401805 -38198125 - MIR SINE MIR -23 239 1 302 302 7 36 chrX 124402940 124403079 -38196851 + L1ME LINE L1 5685 5819 -302 183 350 31 21 chrX 124403914 124404011 -38195919 - L2 LINE L2 -179 3093 2996 318 320 160 5 chrX 124404159 124404359 -38195571 - L2 LINE L2 -530 2784 2554 1445 297 5 7 chrX 124404583 124405018 -38194912 + L2 LINE L2 2499 2932 -382 449 184 0 0 chrX 124405099 124405186 -38194744 + AluJ/FLAM SINE Alu 1 87 -225 1811 134 0 8 chrX 124405825 124406087 -38193843 + AluJb SINE Alu 15 274 -38 405 102 0 0 chrX 124406098 124406157 -38193773 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 1164 37 0 53 chrX 124406157 124406346 -38193584 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 335 219 0 0 chrX 124406347 124406411 -38193519 + GA-rich Low_complexity Low_complexity 4 67 0 559 326 72 70 chrX 124406454 124406725 -38193205 + L3 LINE CR1 1042 1316 -261 767 207 20 0 chrX 124406725 124406875 -38193055 + L1PA16 LINE L1 6005 6157 -9 559 326 72 70 chrX 124406875 124407091 -38192839 + L3 LINE CR1 1316 1530 -47 897 202 59 51 chrX 124407095 124407348 -38192582 - MER112 DNA MER1_type -1 255 1 234 182 91 15 chrX 124411358 124411424 -38188506 - MIR SINE MIR -61 147 77 25 0 0 0 chrX 124411941 124411966 -38187964 + AT_rich Low_complexity Low_complexity 1 25 0 288 289 113 0 chrX 124413717 124413814 -38186116 + MIR3 SINE MIR 94 201 -7 4209 44 8 6 chrX 124415220 124416040 -38183890 + L1P2 LINE L1 4819 5642 -513 1901 158 10 0 chrX 124416464 124416762 -38183168 + AluSx SINE Alu 3 303 -9 245 83 0 0 chrX 124416836 124416872 -38183058 - MIR SINE MIR -64 144 109 5206 161 6 18 chrX 124418499 124419469 -38180461 - L1P LINE L1 -3269 2877 1919 425 105 53 0 chrX 124419755 124419831 -38180099 + L1MA4A LINE L1 6218 6297 -6 192 182 0 0 chrX 124420139 124420183 -38179747 + GA-rich Low_complexity Low_complexity 2 45 0 245 83 0 0 chrX 124423960 124423996 -38175934 + MIR SINE MIR 109 144 -64 1788 150 13 10 chrX 124424070 124424370 -38175560 - AluSx SINE Alu -9 303 3 284 190 0 52 chrX 124477566 124477624 -38122306 - L2 LINE L2 -3 3310 3256 366 336 82 0 chrX 124477809 124477931 -38121999 - L2 LINE L2 -4 3268 3137 525 274 41 111 chrX 124479200 124479470 -38120460 - MIR SINE MIR -4 258 8 21 0 0 0 chrX 124479833 124479854 -38120076 + AT_rich Low_complexity Low_complexity 1 21 0 384 226 55 85 chrX 124480722 124480875 -38119055 + MIR SINE MIR 36 182 -58 231 367 55 9 chrX 124481075 124481184 -38118746 - L2 LINE L2 -5 3267 3154 596 351 154 44 chrX 124482036 124482841 -38117089 + L2 LINE L2 2360 3272 0 242 268 188 9 chrX 124483800 124483912 -38116018 + L2 LINE L2 3141 3272 0 330 115 0 0 chrX 124483987 124484039 -38115891 + (CTA)n Simple_repeat Simple_repeat 2 53 0 691 254 49 11 chrX 124484044 124484229 -38115701 - MIR SINE MIR -2 260 69 1953 138 24 18 chrX 124484229 124484569 -38115361 - MLT1A1 LTR MaLR 0 365 24 1032 194 52 36 chrX 124485110 124485358 -38114572 + MIR SINE MIR 6 257 -5 1039 198 53 5 chrX 124485404 124485611 -38114319 - MER20 DNA MER1_type 0 219 3 225 291 18 0 chrX 124486754 124486809 -38113121 + MIR SINE MIR 46 101 -107 185 239 0 0 chrX 124487003 124487049 -38112881 + MIR SINE MIR 102 147 -115 334 188 71 62 chrX 124487051 124487163 -38112767 - L2 LINE L2 0 3313 3201 220 243 149 14 chrX 124487144 124487218 -38112712 + MIR SINE MIR 155 238 -24 * 772 334 31 25 chrX 124488726 124489052 -38110878 + L3 LINE CR1 1009 1336 -241 402 336 24 0 chrX 124489068 124489193 -38110737 - L2 LINE L2 0 3272 3145 469 286 162 54 chrX 124489273 124489514 -38110416 + L3 LINE CR1 1309 1575 -2 651 244 163 19 chrX 124489955 124490164 -38109766 - MIR SINE MIR -23 239 1 251 302 7 36 chrX 124491299 124491438 -38108492 + L1ME LINE L1 5685 5819 -302 23 33 0 0 chrX 124491463 124491493 -38108437 + AT_rich Low_complexity Low_complexity 1 30 0 285 29 0 0 chrX 124492260 124492294 -38107636 + (TG)n Simple_repeat Simple_repeat 1 34 0 1536 145 0 0 chrX 124492304 124492555 -38107375 - AluSc SINE Alu 0 310 60 729 149 0 0 chrX 124492655 124492776 -38107154 - L1M2 LINE L1 -6725 124 4 337 200 0 35 chrX 124493257 124493342 -38106588 + L1ME3A LINE L1 6080 6161 -9 261 147 279 0 chrX 124493397 124493465 -38106465 + L1ME2 LINE L1 6068 6154 -10 359 292 151 0 chrX 124493519 124493704 -38106226 + L1MC4 LINE L1 7830 8042 0 2088 89 0 18 chrX 124494015 124494296 -38105634 + AluSx SINE Alu 3 278 -34 336 120 0 0 chrX 124494296 124494346 -38105584 + Alu SINE Alu 247 296 -6 864 129 57 0 chrX 124495993 124496189 -38103741 + AluSg/x SINE Alu 137 340 0 228 226 38 19 chrX 124496890 124496943 -38102987 - L2 LINE L2 -24 3248 3195 199 250 39 19 chrX 124497947 124497999 -38101931 - MIR SINE MIR -208 54 2 2112 134 3 16 chrX 124498145 124498459 -38101471 - AluSx SINE Alu 0 312 3 3713 37 2 0 chrX 124501423 124501886 -38098044 - L1PA6 LINE L1 -318 5836 5373 390 206 0 0 chrX 124501891 124501959 -38097971 - MER5A DNA MER1_type -121 68 1 223 327 113 40 chrX 124501959 124502285 -38097645 - L2 LINE L2 -1656 1658 1309 213 258 45 11 chrX 124502312 124502401 -38097529 - L2 LINE L2 -936 2378 2287 435 164 34 185 chrX 124502427 124502573 -38097357 + L2 LINE L2 3185 3308 -5 679 238 11 2 chrX 124502683 124502861 -38097069 + MIR SINE MIR 36 257 -5 3170 175 27 32 chrX 124504974 124505809 -38094121 + L1MB7 LINE L1 5019 5840 -344 2386 87 0 3 chrX 124505809 124506109 -38093821 + AluSq SINE Alu 1 299 -14 3170 175 27 32 chrX 124506109 124506278 -38093652 + L1MB7 LINE L1 5840 6008 -176 591 158 171 0 chrX 124506346 124506492 -38093438 - MER96B DNA MER1_type? -246 171 1 636 200 38 6 chrX 124506495 124506655 -38093275 + L1MB7 LINE L1 6006 6170 -14 653 198 124 6 chrX 124507584 124507761 -38092169 + MER112 DNA MER1_type 1 198 -62 482 225 120 50 chrX 124508408 124508608 -38091322 - MIR SINE MIR -41 221 8 509 248 99 7 chrX 124509236 124509377 -38090553 + MIR SINE MIR 8 161 -101 195 171 86 0 chrX 124509364 124509399 -38090531 + L2 LINE L2 3258 3295 -18 * 22 0 0 0 chrX 124510531 124510553 -38089377 + AT_rich Low_complexity Low_complexity 1 22 0 619 178 31 80 chrX 124511961 124512124 -38087806 + MIR SINE MIR 108 262 0 463 201 30 146 chrX 124513100 124513264 -38086666 - MER5B DNA MER1_type -33 145 1 456 230 250 7 chrX 124513275 124513423 -38086507 + MER5A DNA MER1_type 1 184 -5 840 174 60 0 chrX 124513955 124514122 -38085808 - MER5B DNA MER1_type 0 178 2 21 0 0 0 chrX 124514203 124514224 -38085706 + AT_rich Low_complexity Low_complexity 1 21 0 627 167 0 50 chrX 124514252 124514372 -38085558 + FLAM_A SINE Alu 13 126 -16 584 307 0 0 chrX 124515035 124515188 -38084742 + MIR3 SINE MIR 37 189 -19 273 260 0 0 chrX 124520114 124520164 -38079766 - L2 LINE L2 -76 3196 3147 254 301 58 19 chrX 124520253 124520356 -38079574 - MIR SINE MIR -67 141 35 1124 87 19 0 chrX 124520882 124521043 -38078887 + L1PA10 LINE L1 6005 6168 0 238 0 81 0 chrX 124521142 124521179 -38078751 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 984 294 61 49 chrX 124522022 124522450 -38077480 - L2 LINE L2 -19 3294 2862 586 315 18 0 chrX 124522433 124522598 -38077332 - L2 LINE L2 -707 2607 2440 * 335 103 86 0 chrX 124522747 124522805 -38077125 - L1MB8 LINE L1 -14 6164 6102 2675 146 87 9 chrX 124522824 124523366 -38076564 - L1MB4 LINE L1 0 6180 5597 2066 99 59 0 chrX 124523374 124523647 -38076283 - AluSg SINE Alu -18 292 4 197 318 45 55 chrX 124524062 124524172 -38075758 + L3b LINE CR1 1458 1566 -17 26 64 0 0 chrX 124524399 124524446 -38075484 + AT_rich Low_complexity Low_complexity 1 47 0 362 203 0 0 chrX 124524471 124524545 -38075385 + L1MA7 LINE L1 5827 5900 -391 6293 86 28 5 chrX 124524640 124525780 -38074150 - L1PA14 LINE L1 0 6161 5008 207 0 0 0 chrX 124526667 124526690 -38073240 + (CA)n Simple_repeat Simple_repeat 2 24 0 1014 304 62 6 chrX 124527131 124527468 -38072462 + L3 LINE CR1 1185 1541 -36 320 337 44 50 chrX 124527468 124527649 -38072281 - MER5A DNA MER1_type 0 189 10 209 161 0 0 chrX 124529630 124529661 -38070269 + polypyrimidine Low_complexity Low_complexity 4 34 0 1359 111 0 0 chrX 124531943 124532114 -38067816 + AluSx SINE Alu 1 171 -141 236 53 26 0 chrX 124532120 124532158 -38067772 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1026 148 48 5 chrX 124533400 124533589 -38066341 - MER3 DNA MER1_type 0 209 13 781 293 54 5 chrX 124533710 124533932 -38065998 - MIR SINE MIR -17 245 13 387 212 233 14 chrX 124534881 124535027 -38064903 - MIR SINE MIR -4 258 81 241 398 8 25 chrX 124535255 124535373 -38064557 + MIR3 SINE MIR 4 119 -89 210 351 18 0 chrX 124535392 124535449 -38064481 + MIR SINE MIR 21 78 -184 * 1121 243 152 40 chrX 124535442 124536061 -38063869 - L2 LINE L2 0 3313 2616 1611 182 7 21 chrX 124536061 124536352 -38063578 + AluJo SINE Alu 1 287 -25 465 343 12 52 chrX 124536454 124536485 -38063445 + L3 LINE CR1 1293 1324 -253 752 207 20 0 chrX 124536485 124536635 -38063295 + L1PA16 LINE L1 6005 6157 -9 465 343 12 52 chrX 124536635 124536851 -38063079 + L3 LINE CR1 1324 1530 -47 830 209 55 51 chrX 124536855 124537109 -38062821 - MER112 DNA MER1_type -1 255 1 261 182 91 15 chrX 124541118 124541184 -38058746 - MIR SINE MIR -61 147 77 25 0 0 0 chrX 124541701 124541726 -38058204 + AT_rich Low_complexity Low_complexity 1 25 0 181 290 0 32 chrX 124545223 124545285 -38054645 - L3 LINE CR1 -1449 128 69 24 32 0 0 chrX 124546602 124546633 -38053297 + AT_rich Low_complexity Low_complexity 1 31 0 2386 86 0 19 chrX 124546638 124546953 -38052977 + AluSc SINE Alu 1 309 0 310 287 47 9 chrX 124548144 124548260 -38051670 + MIR SINE MIR 50 172 -66 281 311 192 18 chrX 124548383 124548550 -38051380 - L2 LINE L2 -62 3210 3015 603 120 0 46 chrX 124549072 124549180 -38050750 - MER20 DNA MER1_type -116 103 1 2279 193 28 12 chrX 124549404 124549913 -38050017 - Charlie1b DNA MER1_type -6 517 1 187 161 0 0 chrX 124551202 124551233 -38048697 - MIR SINE MIR -110 152 122 192 77 0 0 chrX 124555246 124555272 -38044658 + (T)n Simple_repeat Simple_repeat 1 26 0 1464 173 40 43 chrX 124555428 124555752 -38044178 - MER33 DNA MER1_type 0 324 2 2474 65 0 0 chrX 124555796 124556089 -38043841 + AluY SINE Alu 1 293 -18 212 0 36 0 chrX 124556577 124556605 -38043325 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2225 107 0 7 chrX 124556631 124556930 -38043000 - AluSx SINE Alu -15 297 1 415 282 34 8 chrX 124557510 124557627 -38042303 - MIR3 SINE MIR -85 123 4 551 253 158 0 chrX 124557964 124558110 -38041820 - MER5A DNA MER1_type 0 189 21 207 211 35 18 chrX 124558152 124558209 -38041721 + GA-rich Low_complexity Low_complexity 2 59 0 309 204 74 93 chrX 124559696 124559804 -38040126 - MIR SINE MIR -31 177 71 23 0 0 0 chrX 124561070 124561093 -38038837 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chrX 124561209 124561244 -38038686 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 242 10 71 chrX 124562255 124562354 -38037576 - HsTC2 DNA Tc2 -626 1272 1180 756 322 97 35 chrX 124566125 124566280 -38033650 + L2 LINE L2 1745 1889 -1425 1194 188 47 0 chrX 124566280 124566493 -38033437 + MER58A DNA MER1_type 1 223 -1 756 322 97 35 chrX 124566493 124566914 -38033016 + L2 LINE L2 1889 2357 -957 21 0 0 0 chrX 124567008 124567029 -38032901 + AT_rich Low_complexity Low_complexity 1 21 0 1801 193 34 39 chrX 124567513 124567901 -38032029 + MLT1B LTR MaLR 1 386 -4 345 394 113 0 chrX 124567978 124568252 -38031678 + L2 LINE L2 2429 2733 -581 1402 180 61 19 chrX 124568332 124568593 -38031337 - AluJo SINE Alu -30 282 11 6348 193 29 12 chrX 124568699 124570317 -38029613 - L1PA15 LINE L1 -1 6815 5142 2265 107 3 0 chrX 124570317 124570627 -38029303 - AluY SINE Alu 0 311 1 6348 193 29 12 chrX 124570627 124571110 -38028820 - L1PA15 LINE L1 -1674 5142 4668 786 208 0 0 chrX 124571110 124571259 -38028671 - L1PA15 LINE L1 -2562 4235 4087 * 6505 253 64 29 chrX 124571256 124573214 -38026716 - L1PA15 LINE L1 -4760 2027 1 223 339 200 37 chrX 124573253 124573498 -38026432 + L2 LINE L2 2909 3193 -79 242 308 167 13 chrX 124574045 124574201 -38025729 + LTR16A LTR ERVL 25 204 -246 515 255 72 78 chrX 124574203 124574509 -38025421 + LTR16A LTR ERVL 146 449 -1 1229 319 16 8 chrX 124574820 124575184 -38024746 + HERV16 LTR ERVL 342 708 -4288 2479 309 62 40 chrX 124575231 124576642 -38023288 + HERV16 LTR ERVL 815 2333 -3321 9118 160 15 3 chrX 124576642 124578107 -38021823 + L1MA2 LINE L1 18 1500 -6065 6537 125 13 20 chrX 124578104 124579424 -38020506 + L1MA2 LINE L1 6351 7661 -62 * 220 151 38 0 chrX 124579426 124579442 -38020488 + A-rich Low_complexity Low_complexity 2 16 -40 7167 48 54 0 chrX 124579442 124581033 -38018897 + L1PA5 LINE L1 4520 6151 -3 220 151 38 0 chrX 124581033 124581069 -38018861 + A-rich Low_complexity Low_complexity 16 56 0 874 83 8 0 chrX 124581069 124581190 -38018740 + L1MA3 LINE L1 6130 6251 -54 * 943 73 73 0 chrX 124581189 124581325 -38018605 + L1MA3 LINE L1 6130 6275 -30 234 191 0 0 chrX 124581325 124581372 -38018558 + (TG)n Simple_repeat Simple_repeat 2 48 0 272 49 0 0 chrX 124581372 124581413 -38018517 + L1MA3 LINE L1 6265 6305 0 395 259 27 9 chrX 124581578 124581690 -38018240 - LTR16B LTR ERVL -350 114 1 4891 314 58 54 chrX 124581751 124584793 -38015137 + HERV16 LTR ERVL 2412 4996 0 641 322 155 13 chrX 124584793 124585187 -38014743 + LTR16A LTR ERVL 1 450 0 439 242 38 38 chrX 124586173 124586305 -38013625 - L1ME3 LINE L1 -86 6076 5945 21 0 0 0 chrX 124587274 124587295 -38012635 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 124587440 124587462 -38012468 + AT_rich Low_complexity Low_complexity 1 22 0 660 258 33 33 chrX 124587760 124587942 -38011988 - MER63A DNA MER1_type -26 184 3 210 37 0 0 chrX 124587956 124587983 -38011947 + (CA)n Simple_repeat Simple_repeat 2 28 0 180 310 84 14 chrX 124588670 124588741 -38011189 - L2 LINE L2 -3 3310 3235 2573 143 74 20 chrX 124588801 124589207 -38010723 - MSTC LTR MaLR 0 428 1 1506 209 109 29 chrX 124589512 124589783 -38010147 - MLT1I LTR MaLR 0 409 98 3614 127 6 4 chrX 124589783 124590278 -38009652 - LOR1a LTR ERV1 -1 496 1 1506 209 109 29 chrX 124590278 124590383 -38009547 - MLT1I LTR MaLR -311 98 3 293 320 36 65 chrX 124590388 124590663 -38009267 - L2 LINE L2 -576 2738 2472 275 289 52 0 chrX 124591967 124592064 -38007866 - MIR SINE MIR -7 255 154 250 337 0 0 chrX 124592167 124592250 -38007680 + LTR33 LTR ERVL 101 183 -338 1588 111 60 0 chrX 124592385 124592602 -38007328 + MER30 DNA MER1_type 1 230 0 498 246 64 35 chrX 124592628 124592799 -38007131 + LTR33A LTR ERVL 333 508 -15 494 267 4 112 chrX 124593074 124593351 -38006579 - MLT1K LTR MaLR -23 565 319 203 103 26 0 chrX 124593466 124593505 -38006425 + T-rich Low_complexity Low_complexity 2 41 0 7080 20 0 0 chrX 124593515 124594312 -38005618 - L1PA3 LINE L1 0 6155 5359 2646 25 0 0 chrX 124594312 124594628 -38005302 + L1PA3 LINE L1 5052 5367 -779 197 115 33 115 chrX 124594918 124594979 -38004951 + L2 LINE L2 3180 3235 -78 4949 214 25 83 chrX 124595031 124595062 -38004868 - L1MB3 LINE L1 -12 6171 6140 2527 93 35 0 chrX 124595062 124595406 -38004524 - L1PA11 LINE L1 -3 6171 5816 4949 214 25 83 chrX 124595406 124596947 -38002983 - L1MB3 LINE L1 -43 6140 4629 818 128 17 17 chrX 124596947 124597064 -38002866 + FLAM_A SINE Alu 12 128 -14 4949 214 25 83 chrX 124597064 124597403 -38002527 - L1MB3 LINE L1 -1554 4629 4272 241 329 63 0 chrX 124597403 124597482 -38002448 + L2 LINE L2 3188 3271 -1 493 273 133 47 chrX 124597859 124598268 -38001662 + MLT1H LTR MaLR 48 543 -6 5144 162 56 19 chrX 124599592 124600568 -37999362 - L1MA10 LINE L1 0 6334 5320 4483 154 26 15 chrX 124600568 124601375 -37998555 - L1MA7 LINE L1 0 6291 5476 16067 137 12 3 chrX 124601375 124605816 -37994114 - L1PA11 LINE L1 -6 7606 3132 1771 205 8 22 chrX 124605825 124606196 -37993734 - L1PA11 LINE L1 -7215 366 1 3352 143 150 42 chrX 124606201 124606491 -37993439 - L1MA7 LINE L1 -743 5403 5146 333 83 0 0 chrX 124606491 124606539 -37993391 - MADE1 DNA Mariner 0 80 33 3352 143 150 42 chrX 124606539 124607214 -37992716 - L1MA7 LINE L1 -1000 5146 4339 3000 185 43 18 chrX 124607188 124607908 -37992022 - L1 LINE L1 -786 5360 4623 * 367 211 9 35 chrX 124607894 124608008 -37991922 - L1 LINE L1 -3855 3251 3141 * 2890 42 6 0 chrX 124608009 124608362 -37991568 + L1PA5 LINE L1 5794 6148 -6 1684 251 41 2 chrX 124608363 124608870 -37991060 + L1 LINE L1 2293 2819 -3327 338 148 0 0 chrX 124608885 124608946 -37990984 + FAM SINE Alu 116 176 -3 2414 248 43 22 chrX 124608953 124609934 -37989996 + L1M1 LINE L1 2709 3711 -3854 313 164 0 0 chrX 124609953 124610008 -37989922 - FAM SINE Alu -5 170 116 1368 197 4 0 chrX 124610079 124610313 -37989617 - AluJo SINE Alu -77 235 1 2651 228 53 34 chrX 124610316 124611758 -37988172 - L1 LINE L1 -4518 2589 1134 1007 173 32 96 chrX 124611759 124612071 -37987859 - L1 LINE L1 -6738 292 1 273 29 0 0 chrX 124612106 124612140 -37987790 + (TA)n Simple_repeat Simple_repeat 2 35 0 350 284 19 43 chrX 124612332 124612494 -37987436 - MLT1J1 LTR MaLR -283 163 6 234 0 0 0 chrX 124612635 124612661 -37987269 + (T)n Simple_repeat Simple_repeat 1 26 0 486 93 8 6 chrX 124613680 124613758 -37986172 - L1P LINE L1 -771 5375 5297 575 106 0 0 chrX 124613758 124613840 -37986090 + L1PA15 LINE L1 6072 6156 -9 486 93 8 6 chrX 124613840 124613859 -37986071 - L1P LINE L1 -849 5297 5280 306 0 0 0 chrX 124614997 124615031 -37984899 + (A)n Simple_repeat Simple_repeat 1 34 0 1145 247 106 22 chrX 124615047 124615407 -37984523 - L2 LINE L2 -685 2629 2240 475 308 59 0 chrX 124615406 124615575 -37984355 + MIR SINE MIR 76 254 -8 * 371 233 198 9 chrX 124615645 124615761 -37984169 + MER5B DNA MER1_type 7 144 -34 5195 40 2 5 chrX 124616413 124617044 -37982886 + L1PA5 LINE L1 5526 6154 0 403 18 18 18 chrX 124617147 124617204 -37982726 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 1798 134 0 8 chrX 124617205 124617466 -37982464 - AluJb SINE Alu -39 273 15 454 184 0 0 chrX 124618105 124618192 -37981738 - AluJ/FLAM SINE Alu -225 87 1 1613 294 5 7 chrX 124618273 124618708 -37981222 - L2 LINE L2 -382 2932 2499 349 319 162 42 chrX 124618706 124619182 -37980748 + L2 LINE L2 2301 2833 -481 * 301 250 26 0 chrX 124620538 124620614 -37979316 + MIR SINE MIR 110 187 -75 246 200 73 0 chrX 124620732 124620787 -37979143 - MIR SINE MIR -203 59 1 661 214 55 0 chrX 124620796 124620941 -37978989 - L2 LINE L2 0 3313 3161 520 175 0 0 chrX 124621162 124621259 -37978671 + MER45A DNA AcHobo 82 178 0 1449 218 16 13 chrX 124621297 124621604 -37978326 - AluJb SINE Alu -4 308 1 338 302 27 20 chrX 124621661 124621810 -37978120 + LTR16C LTR ERVL 293 442 -49 2740 259 44 15 chrX 124621828 124622588 -37977342 - L2 LINE L2 -289 3024 2240 228 296 62 12 chrX 124623634 124623715 -37976215 - L2 LINE L2 -20 3252 3168 2275 116 0 0 chrX 124624054 124624347 -37975583 + AluSx SINE Alu 1 293 -19 610 251 137 62 chrX 124624803 124625242 -37974688 - L1ME4a LINE L1 -68 6053 5582 2189 121 0 0 chrX 124625242 124625539 -37974391 + AluSx SINE Alu 1 297 -15 276 270 31 72 chrX 124625849 124626071 -37973859 - L1ME4a LINE L1 -2281 5527 5315 328 180 16 0 chrX 124626177 124626238 -37973692 - AluSp SINE Alu -138 165 104 785 168 56 22 chrX 124626257 124626463 -37973467 + L1PB4 LINE L1 5773 5974 -182 450 165 68 10 chrX 124626442 124626545 -37973385 + L1M1 LINE L1 8 116 -7449 * 2064 138 13 0 chrX 124626545 124626843 -37973087 + AluSx SINE Alu 1 302 -10 426 85 0 0 chrX 124626843 124626902 -37973028 + (GGA)n Simple_repeat Simple_repeat 2 60 0 1131 119 0 0 chrX 124626902 124627078 -37972852 + (GAA)n Simple_repeat Simple_repeat 2 177 0 642 59 0 0 chrX 124627085 124627170 -37972760 + L1M1 LINE L1 106 190 -7375 17002 52 14 8 chrX 124627189 124629389 -37970541 + HERVL-A1 LTR ERVL 3434 5646 -8 3108 63 0 0 chrX 124629389 124629786 -37970144 + MLT2A1 LTR ERVL 4 400 -44 684 191 0 0 chrX 124629803 124630124 -37969806 + (TA)n Simple_repeat Simple_repeat 1 321 0 364 87 0 17 chrX 124630124 124630195 -37969735 + MLT2A1 LTR ERVL 391 444 0 315 48 0 159 chrX 124630271 124630334 -37969596 + MADE1 DNA Mariner 1 53 -27 454 247 118 17 chrX 124630337 124630515 -37969415 + LTR33 LTR ERVL 326 521 0 2045 126 123 0 chrX 124631179 124631528 -37968402 + MSTD LTR MaLR 3 394 -2 1696 157 26 31 chrX 124631530 124631881 -37968049 - MLT1A1 LTR MaLR -16 349 1 435 256 64 44 chrX 124632224 124632427 -37967503 + LTR67 LTR ERVL 351 557 0 296 300 80 0 chrX 124632667 124632767 -37967163 - MIR SINE MIR -17 245 138 2064 119 0 20 chrX 124632849 124633176 -37966754 + AluSx SINE Alu 1 321 0 324 174 29 0 chrX 124633566 124633635 -37966295 + Charlie8 DNA MER1_type 122 192 -2225 232 214 0 18 chrX 124633674 124633730 -37966200 + Charlie8 DNA MER1_type 1373 1427 -990 619 274 27 16 chrX 124634846 124635032 -37964898 - MER5A DNA MER1_type -1 188 1 509 243 40 86 chrX 124635652 124635701 -37964229 + MER5B DNA MER1_type 34 84 -94 1131 179 5 45 chrX 124635701 124635925 -37964005 - MER20 DNA MER1_type -1 218 4 509 243 40 86 chrX 124635925 124636027 -37963903 + MER5B DNA MER1_type 84 178 0 446 214 22 0 chrX 124636040 124636129 -37963801 + MIR SINE MIR 112 202 -60 1116 241 48 3 chrX 124636195 124636511 -37963419 + MER58B DNA MER1_type 1 330 -11 1126 183 22 13 chrX 124636513 124636743 -37963187 + LTR52 LTR ERVL 187 418 -3 1253 193 25 30 chrX 124636749 124637056 -37962874 + MLT1D LTR MaLR 224 505 0 2097 209 56 0 chrX 124637056 124637540 -37962390 + Charlie1 DNA MER1_type 1460 1970 -791 3359 174 35 8 chrX 124638011 124638754 -37961176 + Charlie1 DNA MER1_type 1960 2722 -39 2027 120 31 0 chrX 124638798 124639090 -37960840 + AluSx SINE Alu 3 303 -9 382 265 23 37 chrX 124639097 124639288 -37960642 + L1ME2 LINE L1 5679 5876 -288 35 0 0 0 chrX 124639530 124639565 -37960365 + AT_rich Low_complexity Low_complexity 1 35 0 667 262 55 13 chrX 124639680 124639917 -37960013 + Charlie7 DNA MER1_type 191 437 -2175 1192 153 0 0 chrX 124639925 124640128 -37959802 + L1P LINE L1 2189 2391 -3755 2331 94 3 0 chrX 124640128 124640427 -37959503 + AluSp SINE Alu 1 300 -13 1549 199 16 8 chrX 124640427 124640802 -37959128 + L1P LINE L1 2833 3210 -2936 10809 132 4 8 chrX 124643099 124644944 -37954986 + L1P LINE L1 3211 5048 -1098 298 223 19 96 chrX 124644943 124645100 -37954830 + L1MC5 LINE L1 7161 7305 -656 * 224 222 37 0 chrX 124645102 124645156 -37954774 + GA-rich Low_complexity Low_complexity 2 57 0 1078 184 73 98 chrX 124645176 124645391 -37954539 + L1MC5 LINE L1 7367 7586 -375 11910 85 18 1 chrX 124645391 124647821 -37952109 + L1PA7 LINE L1 3706 6152 -2 1078 184 73 98 chrX 124647821 124647855 -37952075 + L1MC5 LINE L1 7586 7619 -342 2941 148 13 26 chrX 124647855 124648397 -37951533 + L1MB8 LINE L1 5643 6177 -1 1078 184 73 98 chrX 124648397 124648705 -37951225 + L1MC5 LINE L1 7619 7911 -50 307 259 36 18 chrX 124649029 124649141 -37950789 + L1M4 LINE L1 5096 5209 -937 9966 120 48 7 chrX 124649150 124652477 -37947453 + L1PBa LINE L1 294 3909 -2953 30260 103 11 21 chrX 124652484 124655515 -37944415 + L1PA8 LINE L1 10 3072 -3415 2203 92 0 0 chrX 124655515 124655798 -37944132 + AluY SINE Alu 28 310 -1 30260 103 11 21 chrX 124655798 124659246 -37940684 + L1PA8 LINE L1 3072 6487 0 2402 68 3 23 chrX 124659317 124659625 -37940305 - AluSp SINE Alu -11 302 1 23 0 0 0 chrX 124661175 124661198 -37938732 + AT_rich Low_complexity Low_complexity 1 23 0 1418 252 17 19 chrX 124661546 124661967 -37937963 - L1M4 LINE L1 -1922 4158 3739 781 262 155 26 chrX 124662710 124662842 -37937088 - L1ME LINE L1 -5049 1033 919 288 0 0 0 chrX 124662842 124662874 -37937056 + (TG)n Simple_repeat Simple_repeat 2 33 0 781 262 155 26 chrX 124662874 124663554 -37936376 - L1ME LINE L1 -5163 919 277 2819 177 11 6 chrX 124663637 124664168 -37935762 + L1MB5 LINE L1 5633 6166 -8 337 292 143 63 chrX 124664276 124664704 -37935226 - L1ME LINE L1 -5598 472 11 5585 185 30 43 chrX 124664936 124665942 -37933988 - L1MB8 LINE L1 -8 6170 5153 1944 150 0 10 chrX 124665942 124666248 -37933682 - AluJb SINE Alu -9 303 1 5585 185 30 43 chrX 124666248 124666407 -37933523 - L1MB8 LINE L1 -1025 5153 4994 876 112 0 8 chrX 124666407 124666541 -37933389 - FLAM_C SINE Alu 0 133 1 5585 185 30 43 chrX 124666541 124667117 -37932813 - L1MB8 LINE L1 -1184 4994 4461 4745 67 3 22 chrX 124667117 124667744 -37932186 + SVA Other Other 772 1386 0 5585 185 30 43 chrX 124667744 124668142 -37931788 - L1MB8 LINE L1 -1717 4461 4060 282 261 33 22 chrX 124668244 124668336 -37931594 - MLT1I LTR MaLR -237 172 80 1124 166 0 0 chrX 124668525 124668694 -37931236 + AluSx SINE Alu 1 169 -143 38 0 0 0 chrX 124668774 124668812 -37931118 + AT_rich Low_complexity Low_complexity 1 38 0 353 170 0 0 chrX 124668812 124668865 -37931065 + AluJo/FLAM SINE Alu 73 125 -177 2158 108 0 3 chrX 124668868 124669163 -37930767 + AluSx SINE Alu 18 311 -1 310 197 0 0 chrX 124669242 124669308 -37930622 - L1PB4 LINE L1 -12 6144 6079 531 245 36 21 chrX 124669485 124669677 -37930253 + LTR37B LTR ERV1 217 411 -57 306 321 93 21 chrX 124669820 124669960 -37929970 + L2 LINE L2 3121 3270 -2 1681 153 33 7 chrX 124671246 124671521 -37928409 - AluJo SINE Alu -30 282 1 442 200 190 0 chrX 124672580 124672680 -37927250 - L2 LINE L2 -2 3311 3193 542 196 77 49 chrX 124673440 124673583 -37926347 - MIR SINE MIR -2 260 114 2910 214 107 3 chrX 124673591 124674482 -37925448 + L1MEc LINE L1 2153 3087 -3128 335 287 108 54 chrX 124674959 124675152 -37924778 - MER5B DNA MER1_type -2 176 1 256 299 0 0 chrX 124675159 124675226 -37924704 - MIR SINE MIR -15 247 181 1675 137 8 0 chrX 124676699 124676948 -37922982 + AluSx SINE Alu 56 306 -6 537 196 224 17 chrX 124678370 124678529 -37921401 + L2 LINE L2 3094 3295 -18 1245 46 0 0 chrX 124678529 124678680 -37921250 - L1PB1 LINE L1 -6 6145 5995 537 196 224 17 chrX 124678680 124678699 -37921231 + L2 LINE L2 3295 3309 -4 1175 211 14 0 chrX 124678728 124678946 -37920984 + MER58A DNA MER1_type 2 222 -2 414 206 29 24 chrX 124680638 124680808 -37919122 + GA-rich Low_complexity Low_complexity 2 172 0 2371 136 9 55 chrX 124681592 124681991 -37917939 + L1MB7 LINE L1 5746 6125 -59 2177 97 0 10 chrX 124681991 124682291 -37917639 + AluSc SINE Alu 1 297 -12 2371 136 9 55 chrX 124682291 124682331 -37917599 + L1MB7 LINE L1 6125 6165 -19 534 283 41 89 chrX 124685111 124685404 -37914526 - MER102a DNA MER1_type -2 328 50 816 167 0 0 chrX 124685422 124685554 -37914376 + FLAM_C SINE Alu 2 133 0 2175 98 0 7 chrX 124685575 124685861 -37914069 + AluSx SINE Alu 1 284 -28 252 0 0 0 chrX 124685861 124685889 -37914041 + (AAATG)n Simple_repeat Simple_repeat 3 30 0 1654 171 52 4 chrX 124686559 124686710 -37913220 - AluJo SINE Alu -30 282 111 378 0 0 0 chrX 124686710 124686752 -37913178 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1654 171 52 4 chrX 124686752 124686869 -37913061 - AluJo SINE Alu -201 111 1 659 200 0 0 chrX 124687233 124687348 -37912582 + FLAM_C SINE Alu 2 116 -17 23 33 0 0 chrX 124687349 124687379 -37912551 + AT_rich Low_complexity Low_complexity 1 30 0 2351 107 0 0 chrX 124687384 124687694 -37912236 + AluSx SINE Alu 1 310 -2 2040 108 0 67 chrX 124687707 124688023 -37911907 + AluSx SINE Alu 1 295 -17 2382 91 0 0 chrX 124689014 124689321 -37910609 + AluSg SINE Alu 1 307 -3 201 74 0 0 chrX 124689561 124689588 -37910342 + (A)n Simple_repeat Simple_repeat 1 27 0 241 301 65 0 chrX 124689767 124689860 -37910070 + MIR SINE MIR 61 159 -103 5034 157 19 15 chrX 124690877 124691968 -37907962 + L1MB5 LINE L1 5082 6173 -1 183 80 0 0 chrX 124693806 124693831 -37906099 + (A)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chrX 124694922 124694947 -37904983 + (CA)n Simple_repeat Simple_repeat 2 26 0 241 263 0 35 chrX 124696486 124696543 -37903387 - L2 LINE L2 -14 3299 3245 22 0 0 0 chrX 124696620 124696642 -37903288 + AT_rich Low_complexity Low_complexity 1 22 0 238 339 73 42 chrX 124696778 124696943 -37902987 + MIR SINE MIR 35 204 -58 250 218 36 0 chrX 124700785 124700840 -37899090 + CT-rich Low_complexity Low_complexity 2 58 0 2256 93 0 7 chrX 124701026 124701317 -37898613 + AluSx SINE Alu 1 289 -23 1429 120 5 14 chrX 124701382 124701591 -37898339 + AluSx SINE Alu 1 207 -105 754 153 0 29 chrX 124701836 124701973 -37897957 + FLAM_C SINE Alu 1 133 0 23 78 0 0 chrX 124704180 124704231 -37895699 + AT_rich Low_complexity Low_complexity 1 51 0 2142 84 0 24 chrX 124704351 124704663 -37895267 - AluY SINE Alu 0 305 1 1021 206 105 5 chrX 124704887 124705096 -37894834 - MIR SINE MIR -18 244 15 190 349 121 22 chrX 124706223 124706455 -37893475 + L2 LINE L2 2567 2821 -493 1607 139 39 8 chrX 124707744 124708003 -37891927 + AluSx SINE Alu 43 309 -3 597 212 9 0 chrX 124708055 124708168 -37891762 + MER81 DNA DNA 1 114 0 202 188 50 0 chrX 124708369 124708470 -37891460 + (TA)n Simple_repeat Simple_repeat 2 107 0 369 0 0 0 chrX 124708472 124708513 -37891417 + (CA)n Simple_repeat Simple_repeat 2 42 0 2423 97 0 0 chrX 124709596 124709906 -37890024 + AluSx SINE Alu 1 310 -2 359 281 125 19 chrX 124710298 124710458 -37889472 - 7SLRNA srpRNA srpRNA -107 213 37 304 276 52 52 chrX 124711192 124711326 -37888604 - MIR3 SINE MIR -1 207 74 1347 156 4 13 chrX 124711555 124711780 -37888150 + AluJb SINE Alu 85 307 -5 2071 126 0 3 chrX 124712657 124712969 -37886961 - AluSx SINE Alu 0 311 1 713 215 44 105 chrX 124713526 124713928 -37886002 - L1MC4 LINE L1 -1 8041 7573 751 243 101 9 chrX 124715576 124715794 -37884136 - MIR SINE MIR 0 262 25 452 319 141 58 chrX 124716107 124716526 -37883404 - L2 LINE L2 -83 3189 2738 2321 102 3 0 chrX 124716744 124717049 -37882881 + AluSx SINE Alu 1 306 -6 1999 154 0 0 chrX 124717644 124717943 -37881987 + AluSx SINE Alu 3 301 -11 423 138 0 0 chrX 124717975 124718062 -37881868 + (CA)n Simple_repeat Simple_repeat 2 88 0 1704 179 24 0 chrX 124718536 124718876 -37881054 - L1 LINE L1 -1514 4632 4285 1089 158 47 9 chrX 124718877 124719092 -37880838 + L1PA16 LINE L1 5942 6164 -2 2174 109 0 3 chrX 124719169 124719477 -37880453 + AluSx SINE Alu 1 307 0 2221 100 0 13 chrX 124721409 124721719 -37878211 + AluSg SINE Alu 1 306 -4 254 273 76 0 chrX 124721719 124721785 -37878145 - L2 LINE L2 -68 3204 3134 758 160 16 8 chrX 124721872 124721997 -37877933 + FLAM_C SINE Alu 5 130 -13 317 250 205 20 chrX 124722017 124722217 -37877713 + L1MC4a LINE L1 5929 6165 -1643 184 340 32 61 chrX 124722307 124722554 -37877376 - L2 LINE L2 -218 3054 2815 262 257 0 29 chrX 124722735 124722805 -37877125 + MIR SINE MIR 195 262 0 21 57 0 0 chrX 124723800 124723835 -37876095 + AT_rich Low_complexity Low_complexity 1 35 0 2175 84 32 0 chrX 124724945 124725230 -37874700 + AluSq SINE Alu 1 294 -19 237 33 0 0 chrX 124726707 124726737 -37873193 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2217 100 0 23 chrX 124726819 124727128 -37872802 + AluSg SINE Alu 1 302 -8 31123 108 18 56 chrX 124727280 124733682 -37866248 + L1PA7 LINE L1 12 6153 -1 2198 103 3 16 chrX 124733740 124734050 -37865880 + AluSg SINE Alu 1 306 -4 209 253 173 0 chrX 124734445 124734520 -37865410 - MIR SINE MIR -13 249 162 327 245 20 31 chrX 124734728 124734826 -37865104 - L1MC5 LINE L1 -35 7926 7830 234 180 98 0 chrX 124734851 124734912 -37865018 - L1MC4 LINE L1 -166 7876 7810 32 0 0 0 chrX 124735160 124735192 -37864738 + AT_rich Low_complexity Low_complexity 1 32 0 716 136 0 0 chrX 124735192 124735295 -37864635 + AluSc SINE Alu 190 292 -17 2283 87 0 26 chrX 124735306 124735618 -37864312 + AluSq SINE Alu 1 304 -9 180 0 0 0 chrX 124735618 124735638 -37864292 + (GA)n Simple_repeat Simple_repeat 2 21 0 1976 146 0 3 chrX 124735692 124735986 -37863944 + AluSx SINE Alu 1 293 -19 2024 151 0 0 chrX 124735993 124736284 -37863646 + AluSq SINE Alu 1 291 -22 3475 134 126 15 chrX 124736290 124736679 -37863251 + L1MCa LINE L1 992 1336 -5090 309 51 0 0 chrX 124736679 124736718 -37863212 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3475 134 126 15 chrX 124736718 124737223 -37862707 + L1MCa LINE L1 1336 1784 -4642 420 20 0 0 chrX 124737223 124737272 -37862658 + (TG)n Simple_repeat Simple_repeat 2 50 0 3475 134 126 15 chrX 124737272 124737627 -37862303 + L1MCa LINE L1 1784 2479 -3947 3667 130 74 10 chrX 124737631 124738255 -37861675 + L1MC1 LINE L1 5662 6325 -8 969 193 10 57 chrX 124738413 124738556 -37861374 + MER5A DNA MER1_type 7 140 -49 2444 70 0 0 chrX 124738556 124738856 -37861074 + AluSc SINE Alu 1 300 -9 969 193 10 57 chrX 124738856 124738904 -37861026 + MER5A DNA MER1_type 140 189 0 1158 156 34 25 chrX 124739668 124739905 -37860025 + L1MC4a LINE L1 7149 7387 -421 376 95 16 0 chrX 124739995 124740058 -37859872 - L1MA4A LINE L1 -5 6298 6235 3403 99 26 65 chrX 124740058 124740388 -37859542 + L1MA4A LINE L1 5629 5929 -374 2392 93 0 0 chrX 124740388 124740701 -37859229 + AluSq SINE Alu 1 313 0 3403 99 26 65 chrX 124740701 124740943 -37858987 + L1MA4A LINE L1 5929 6179 -124 24 53 0 0 chrX 124740960 124740998 -37858932 + AT_rich Low_complexity Low_complexity 1 38 0 1049 217 5 5 chrX 124741059 124741276 -37858654 + AluJb SINE Alu 84 300 -12 3331 178 120 20 chrX 124741510 124741570 -37858360 + L1ME1 LINE L1 5069 5122 -1212 2630 36 0 7 chrX 124741570 124741875 -37858055 + AluY SINE Alu 1 303 -8 3331 178 120 20 chrX 124741875 124742811 -37857119 + L1ME1 LINE L1 5122 6334 0 4761 48 3 0 chrX 124742889 124743473 -37856457 - L1PA5 LINE L1 -3 6151 5566 3111 34 9 0 chrX 124743473 124744035 -37855895 + L1PA5 LINE L1 4993 5559 -595 255 236 214 0 chrX 124744033 124744122 -37855808 + L1ME3A LINE L1 6055 6162 -8 * 728 223 22 0 chrX 124744364 124744503 -37855427 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1591 137 40 0 chrX 124744500 124744748 -37855182 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 245 75 25 0 chrX 124745118 124745158 -37854772 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1908 150 3 22 chrX 124746722 124747036 -37852894 + AluJb SINE Alu 1 308 -4 203 276 0 17 chrX 124747423 124747481 -37852449 + CT-rich Low_complexity Low_complexity 1 57 0 2120 112 20 0 chrX 124748576 124748881 -37851049 - AluSp SINE Alu -2 311 1 477 279 160 27 chrX 124748932 124749269 -37850661 - L1M4 LINE L1 -3628 2518 2137 2209 99 7 0 chrX 124749602 124749886 -37850044 + AluSx SINE Alu 1 286 -26 211 392 56 8 chrX 124749906 124750031 -37849899 + L2 LINE L2 2932 3062 -210 28 29 0 0 chrX 124750442 124750477 -37849453 + AT_rich Low_complexity Low_complexity 1 35 0 1989 142 7 0 chrX 124751414 124751702 -37848228 - AluJb SINE Alu -22 290 1 2107 112 0 0 chrX 124752322 124752608 -37847322 + AluSx SINE Alu 1 286 -26 1287 283 113 9 chrX 124752729 124753181 -37846749 + L2 LINE L2 57 555 -2759 2093 218 82 30 chrX 124753188 124754164 -37845766 - L1M4 LINE L1 -3318 3326 2279 758 59 20 0 chrX 124754164 124754266 -37845664 + L1PA16 LINE L1 6054 6157 -9 2093 218 82 30 chrX 124754266 124754367 -37845563 - L1M4 LINE L1 -4365 2279 2185 790 187 29 21 chrX 124754390 124754624 -37845306 - L1M4 LINE L1 -4740 1825 1171 2218 121 0 7 chrX 124754624 124754929 -37845001 + AluSx SINE Alu 1 303 -9 1314 258 107 50 chrX 124754929 124755592 -37844338 - L1M4 LINE L1 -5492 1050 350 817 258 97 22 chrX 124755902 124756170 -37843760 + L2 LINE L2 573 860 -2454 337 148 16 16 chrX 124756173 124756234 -37843696 + L2 LINE L2 1235 1295 -2019 6250 102 75 31 chrX 124756241 124756852 -37843078 - Tigger3(Golem) DNA MER2_type -3 3026 2443 2307 89 0 7 chrX 124756852 124757155 -37842775 + AluSq SINE Alu 1 301 -12 6250 102 75 31 chrX 124757155 124757533 -37842397 - Tigger3(Golem) DNA MER2_type -586 2443 1980 2171 114 0 3 chrX 124757533 124757832 -37842098 - AluSx SINE Alu -14 298 1 6250 102 75 31 chrX 124757832 124757963 -37841967 - Tigger3(Golem) DNA MER2_type -1049 1980 1856 509 188 0 0 chrX 124757952 124758037 -37841893 - Tigger3(Golem) DNA MER2_type -2944 85 1 * 3678 233 108 28 chrX 124758042 124758912 -37841018 + L2 LINE L2 1324 2313 -1001 7287 95 2 18 chrX 124758912 124759897 -37840033 + LTR5 LTR ERVK 1 969 0 3678 233 108 28 chrX 124759897 124760196 -37839734 + L2 LINE L2 2313 2587 -727 198 0 0 0 chrX 124760230 124760252 -37839678 + (TC)n Simple_repeat Simple_repeat 1 22 0 467 257 21 44 chrX 124760284 124760639 -37839291 + L1MC4 LINE L1 6975 7283 -565 377 264 88 38 chrX 124760822 124761083 -37838847 + L1MC4 LINE L1 7495 7768 -274 1786 97 12 0 chrX 124761096 124761344 -37838586 + AluSp SINE Alu 55 305 -8 21 0 0 0 chrX 124761408 124761429 -37838501 + AT_rich Low_complexity Low_complexity 1 21 0 1235 244 126 2 chrX 124761543 124762077 -37837853 + L2 LINE L2 2701 3313 0 1236 118 123 14 chrX 124762304 124762516 -37837414 - MER46A DNA MER2_type 0 236 2 2262 100 3 7 chrX 124762865 124763164 -37836766 - AluSp SINE Alu -15 298 1 2247 89 0 14 chrX 124763660 124763952 -37835978 - AluSq SINE Alu -25 288 1 234 351 76 84 chrX 124764388 124764981 -37834949 - L2 LINE L2 -2 3311 2723 638 198 66 0 chrX 124765177 124765298 -37834632 + FLAM_A SINE Alu 2 130 -3 234 281 25 124 chrX 124765505 124765626 -37834304 + L2 LINE L2 2983 3091 -181 289 216 43 86 chrX 124766153 124766269 -37833661 - MIR3 SINE MIR -95 113 3 1607 182 53 50 chrX 124767257 124767713 -37832217 + L1ME1 LINE L1 5511 5967 -199 1433 161 36 0 chrX 124767713 124767936 -37831994 + AluJb SINE Alu 1 231 -81 431 219 99 21 chrX 124767938 124768083 -37831847 + L1MA10 LINE L1 6007 6324 -8 1825 172 24 0 chrX 124768687 124768984 -37830946 - AluJo SINE Alu -8 304 1 267 225 0 0 chrX 124769246 124769317 -37830613 + (CATA)n Simple_repeat Simple_repeat 2 72 0 216 312 13 13 chrX 124769415 124769492 -37830438 - L2 LINE L2 -2 3311 3235 402 175 33 17 chrX 124769550 124769670 -37830260 + L1MA9 LINE L1 6190 6311 -1 1934 163 0 0 chrX 124770194 124770495 -37829435 + AluJb SINE Alu 1 301 -11 1042 204 22 52 chrX 124771099 124771330 -37828600 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chrX 124771372 124771393 -37828537 + AT_rich Low_complexity Low_complexity 1 21 0 2322 117 0 0 chrX 124771759 124772066 -37827864 - AluSx SINE Alu -5 307 1 2027 126 0 23 chrX 124772441 124772742 -37827188 + AluSx SINE Alu 1 294 -18 385 244 300 26 chrX 124772889 124773119 -37826811 - L2 LINE L2 0 3313 3021 2235 109 23 0 chrX 124773597 124773901 -37826029 + AluSx SINE Alu 1 311 -1 899 117 23 0 chrX 124774111 124774239 -37825691 + FLAM_C SINE Alu 2 132 -1 305 316 26 68 chrX 124777310 124777427 -37822503 + L3 LINE CR1 1449 1560 -17 2473 70 0 0 chrX 124777442 124777741 -37822189 + AluSg SINE Alu 1 299 -11 2250 115 0 0 chrX 124777857 124778153 -37821777 + AluSx SINE Alu 1 296 -16 2131 111 0 0 chrX 124779483 124779763 -37820167 + AluSq SINE Alu 1 280 -33 210 179 0 0 chrX 124779778 124779834 -37820096 + G-rich Low_complexity Low_complexity 1 56 0 471 297 156 14 chrX 124779899 124780111 -37819819 + MIR SINE MIR 1 242 -20 219 186 0 0 chrX 124780127 124780170 -37819760 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2164 105 3 10 chrX 124780335 124780629 -37819301 + AluSx SINE Alu 1 292 -20 378 170 198 9 chrX 124781049 124781155 -37818775 + MER94 DNA DNA 6 131 -3 852 139 0 0 chrX 124781417 124781539 -37818391 + FLAM_C SINE Alu 1 122 -11 756 168 0 0 chrX 124781620 124781739 -37818191 + AluJb SINE Alu 1 119 -193 277 93 37 0 chrX 124781741 124781795 -37818135 + (TA)n Simple_repeat Simple_repeat 2 57 0 321 204 10 71 chrX 124781796 124781894 -37818036 - L1MC4 LINE L1 -1339 6703 6612 658 157 0 0 chrX 124781927 124782052 -37817878 + AluJb SINE Alu 183 307 0 22 35 0 0 chrX 124782771 124782800 -37817130 + AT_rich Low_complexity Low_complexity 1 29 0 1815 123 39 45 chrX 124782870 124783178 -37816752 + AluJb SINE Alu 1 306 -6 832 155 0 20 chrX 124783617 124783765 -37816165 - L1PA16 LINE L1 -21 6145 6001 2200 115 0 0 chrX 124783842 124784121 -37815809 + AluSg SINE Alu 1 279 -31 225 0 0 0 chrX 124784128 124784153 -37815777 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 213 236 0 18 chrX 124785133 124785188 -37814742 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 24 67 0 0 chrX 124785482 124785527 -37814403 + AT_rich Low_complexity Low_complexity 1 45 0 1257 50 6 0 chrX 124785635 124785795 -37814135 - L1PA5 LINE L1 0 6154 5994 24 0 0 0 chrX 124785984 124786008 -37813922 + AT_rich Low_complexity Low_complexity 1 24 0 1375 180 20 16 chrX 124787110 124787355 -37812575 + AluJo SINE Alu 1 246 -66 243 0 0 0 chrX 124787360 124787387 -37812543 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2104 130 20 0 chrX 124788011 124788311 -37811619 - AluSq SINE Alu -7 306 1 2409 52 0 7 chrX 124788574 124788865 -37811065 + AluY SINE Alu 1 289 -22 932 92 46 0 chrX 124788978 124789131 -37810799 + L1MA5 LINE L1 6102 6261 -39 2374 82 0 0 chrX 124789972 124790266 -37809664 + AluSx SINE Alu 1 294 -18 1978 128 3 43 chrX 124790292 124790596 -37809334 - AluSx SINE Alu -20 292 1 1524 183 0 51 chrX 124790633 124790766 -37809164 + AluJo SINE Alu 11 149 -163 2221 99 3 0 chrX 124790766 124791070 -37808860 + AluSq SINE Alu 1 305 0 1524 183 0 51 chrX 124791070 124791247 -37808683 + AluJo SINE Alu 149 306 -6 21 36 0 0 chrX 124791287 124791315 -37808615 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 124791402 124791437 -37808493 + AT_rich Low_complexity Low_complexity 1 35 0 1035 166 77 118 chrX 124792247 124792455 -37807475 + L1MC5 LINE L1 7019 7234 -727 2113 117 6 19 chrX 124792455 124792771 -37807159 + AluSx SINE Alu 1 312 0 1035 166 77 118 chrX 124792771 124792831 -37807099 + L1MC5 LINE L1 7234 7295 -666 1635 164 52 30 chrX 124792831 124793136 -37806794 + AluJb SINE Alu 1 312 0 1035 166 77 118 chrX 124793136 124793349 -37806581 + L1MC5 LINE L1 7295 7481 -480 2830 212 68 78 chrX 124793373 124794284 -37805646 + L1MEc LINE L1 2161 3080 -3135 1645 154 13 69 chrX 124794284 124794602 -37805328 - AluJb SINE Alu -12 300 1 2830 212 68 78 chrX 124794602 124794764 -37805166 + L1MEc LINE L1 3080 3242 -2973 2196 122 0 10 chrX 124794764 124795076 -37804854 + AluJb SINE Alu 1 309 -3 2830 212 68 78 chrX 124795076 124795562 -37804368 + L1MEc LINE L1 3242 3731 -2484 2056 102 0 70 chrX 124795562 124795708 -37804222 + AluSx SINE Alu 1 115 -197 2404 69 0 13 chrX 124795708 124796013 -37803917 + AluY SINE Alu 1 301 -10 2056 102 0 70 chrX 124796013 124796180 -37803750 + AluSx SINE Alu 115 292 -20 2830 212 68 78 chrX 124796180 124797038 -37802892 + L1MEc LINE L1 3731 4805 -1410 432 176 65 49 chrX 124797042 124797142 -37802788 + MER2 DNA MER2_type 1 110 -129 332 226 0 0 chrX 124797142 124797204 -37802726 - MER2 DNA MER2_type 0 345 284 240 159 0 45 chrX 124797236 124797280 -37802650 + MER2 DNA MER2_type 285 326 -19 3009 139 59 28 chrX 124797302 124797742 -37802188 + L1MB1 LINE L1 4808 5233 -1108 2117 127 3 0 chrX 124797742 124798034 -37801896 + AluSx SINE Alu 1 293 -19 3009 139 59 28 chrX 124798034 124798158 -37801772 + L1MB1 LINE L1 5233 5352 -989 2338 86 0 10 chrX 124798158 124798461 -37801469 + AluY SINE Alu 1 300 -11 3009 139 59 28 chrX 124798461 124798680 -37801250 + L1MB1 LINE L1 5352 5598 -743 663 186 17 0 chrX 124798680 124798798 -37801132 + FLAM_C SINE Alu 2 121 -22 491 55 0 27 chrX 124798813 124798886 -37801044 + Alu SINE Alu 235 305 -7 1510 206 34 7 chrX 124798919 124799211 -37800719 + AluJo SINE Alu 1 300 -12 1353 137 14 5 chrX 124799216 124799427 -37800503 + AluJo SINE Alu 87 299 -13 1817 162 3 23 chrX 124799429 124799737 -37800193 + AluJo SINE Alu 1 302 -10 3100 164 20 20 chrX 124799740 124800351 -37799579 + L1MB1 LINE L1 5627 6237 0 2148 138 0 0 chrX 124800430 124800735 -37799195 - AluSx SINE Alu -5 307 3 2166 99 3 16 chrX 124800774 124801077 -37798853 + AluSx SINE Alu 7 305 -7 1091 181 39 31 chrX 124801079 124801333 -37798597 + Charlie1 DNA MER1_type 1637 1892 -869 5156 57 27 9 chrX 124801333 124802005 -37797925 + L1PA8 LINE L1 5485 6168 -4 1103 239 103 68 chrX 124802047 124802164 -37797766 + L1ME3A LINE L1 5259 5370 -800 2215 106 0 10 chrX 124802164 124802466 -37797464 + AluSx SINE Alu 4 302 -10 1103 239 103 68 chrX 124802466 124803005 -37796925 + L1ME3A LINE L1 5370 5938 -232 2131 139 0 0 chrX 124803667 124803970 -37795960 + AluSx SINE Alu 1 303 -9 1586 115 0 178 chrX 124804022 124804388 -37795542 + AluJb SINE Alu 1 301 -1 1698 120 3 105 chrX 124804578 124804903 -37795027 + AluJb SINE Alu 13 304 -8 2185 117 0 3 chrX 124805190 124805481 -37794449 + AluSx SINE Alu 1 290 -22 270 265 15 0 chrX 124805601 124805669 -37794261 + A-rich Low_complexity Low_complexity 5 73 0 859 76 0 0 chrX 124805690 124805795 -37794135 + AluJb SINE Alu 196 300 -12 1732 121 21 98 chrX 124806182 124806520 -37793410 + AluJb SINE Alu 1 312 0 29 0 0 0 chrX 124806863 124806892 -37793038 + AT_rich Low_complexity Low_complexity 1 29 0 520 157 83 46 chrX 124806892 124807000 -37792930 - FLAM_A SINE Alu -25 117 6 183 261 58 14 chrX 124807201 124807270 -37792660 - L2 LINE L2 -1871 1443 1372 2271 93 10 10 chrX 124809429 124809742 -37790188 - AluSp SINE Alu 0 313 1 1958 98 0 0 chrX 124809965 124810231 -37789699 + AluY SINE Alu 39 304 -7 570 183 154 11 chrX 124810780 124810955 -37788975 - MIR SINE MIR -2 260 61 180 250 0 0 chrX 124812606 124812646 -37787284 - L2 LINE L2 -12 3301 3262 7714 45 9 11 chrX 124812758 124814260 -37785670 + SVA Other Other 1 1382 -4 189 100 0 0 chrX 124814563 124814584 -37785346 + (A)n Simple_repeat Simple_repeat 1 24 -6 3108 34 24 5 chrX 124814584 124814962 -37784968 + L1PA5 LINE L1 5770 6154 0 189 100 0 0 chrX 124814962 124814970 -37784960 + (A)n Simple_repeat Simple_repeat 23 30 0 871 137 56 112 chrX 124815515 124815636 -37784294 - MER20 DNA MER1_type -33 186 79 315 49 0 0 chrX 124815636 124815677 -37784253 + (CA)n Simple_repeat Simple_repeat 1 41 0 871 137 56 112 chrX 124815677 124815752 -37784178 - MER20 DNA MER1_type -140 79 1 243 218 0 0 chrX 124816494 124816549 -37783381 + CT-rich Low_complexity Low_complexity 2 56 0 1141 142 85 0 chrX 124816550 124816726 -37783204 - AluJo SINE Alu -117 195 5 752 286 15 98 chrX 124816739 124816931 -37782999 + L1M4 LINE L1 2226 2432 -3714 2591 47 0 0 chrX 124816931 124817229 -37782701 + AluY SINE Alu 3 300 -11 2116 125 7 0 chrX 124817229 124817531 -37782399 + AluSx SINE Alu 1 305 -7 752 286 15 98 chrX 124817531 124817865 -37782065 + L1M4 LINE L1 2430 2709 -3437 628 331 0 0 chrX 124817919 124818085 -37781845 + MER91A DNA MER1_type 29 194 -2 489 268 35 97 chrX 124818086 124818144 -37781786 + L1M4 LINE L1 2698 2758 -3388 2204 103 0 47 chrX 124818144 124818464 -37781466 + AluSx SINE Alu 1 305 -7 489 268 35 97 chrX 124818464 124818871 -37781059 + L1M4 LINE L1 2758 3115 -3031 1580 141 99 14 chrX 124818871 124819155 -37780775 - AluSx SINE Alu -4 308 1 489 268 35 97 chrX 124819155 124819325 -37780605 + L1M4 LINE L1 3115 3294 -2852 2093 238 34 4 chrX 124819325 124819830 -37780100 - LTR33 LTR ERVL 0 521 2 1254 308 87 45 chrX 124820021 124820771 -37779159 - ERVL LTR ERVL -356 5408 4628 2296 103 3 13 chrX 124820792 124821104 -37778826 + AluSx SINE Alu 1 309 -3 3219 174 34 67 chrX 124821110 124821123 -37778807 + MER72 LTR ERV1 10 22 -700 2108 109 0 7 chrX 124821123 124821408 -37778522 + AluSg SINE Alu 1 283 -27 225 0 0 0 chrX 124821408 124821433 -37778497 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 3219 174 34 67 chrX 124821433 124822105 -37777825 + MER72 LTR ERV1 21 673 -49 2245 84 18 0 chrX 124822105 124822379 -37777551 + AluSx SINE Alu 1 279 -33 3219 174 34 67 chrX 124822379 124822426 -37777504 + MER72 LTR ERV1 673 720 -2 4989 307 50 30 chrX 124822445 124823667 -37776263 - ERVL LTR ERVL -1136 4628 3432 2019 156 0 6 chrX 124823667 124823981 -37775949 + AluJo SINE Alu 1 312 0 4989 307 50 30 chrX 124823981 124824084 -37775846 - ERVL LTR ERVL -2332 3432 3333 1909 156 0 3 chrX 124824084 124824379 -37775551 + AluJb SINE Alu 1 294 -18 4989 307 50 30 chrX 124824379 124824998 -37774932 - ERVL LTR ERVL -2431 3333 2644 763 310 80 54 chrX 124825032 124825511 -37774419 - ERVL LTR ERVL -3208 2556 2091 2750 39 0 0 chrX 124825511 124825820 -37774110 + AluY SINE Alu 1 309 -2 763 310 80 54 chrX 124825820 124826390 -37773540 - ERVL LTR ERVL -3673 2091 1339 443 292 9 0 chrX 124826422 124826535 -37773395 - MER81 DNA DNA 0 114 1 2080 117 52 0 chrX 124826653 124826944 -37772986 - AluSx SINE Alu -6 306 1 1726 93 118 50 chrX 124827192 124827471 -37772459 + AluSq SINE Alu 1 298 -15 250 299 21 21 chrX 124827474 124827571 -37772359 - ERVL LTR ERVL -4537 459 363 1142 139 6 0 chrX 124827988 124828153 -37771777 - AluJb SINE Alu -18 294 129 1106 173 22 0 chrX 124828163 124828348 -37771582 - MER5A DNA MER1_type 0 189 1 2448 82 3 3 chrX 124828376 124828680 -37771250 + AluSq SINE Alu 1 304 -9 584 251 103 91 chrX 124828725 124829056 -37770874 - L2 LINE L2 -89 3224 2890 463 279 18 12 chrX 124829131 124829296 -37770634 - L1MC4a LINE L1 -1876 5932 5767 2289 98 7 0 chrX 124829311 124829606 -37770324 - AluSq SINE Alu -16 297 1 522 46 0 0 chrX 124829608 124829673 -37770257 + (TG)n Simple_repeat Simple_repeat 2 66 0 627 180 27 9 chrX 124829697 124829808 -37770122 - FLAM_C SINE Alu -27 116 4 264 237 13 40 chrX 124829818 124829894 -37770036 - L1MC4a LINE L1 -2035 5773 5700 2305 120 0 0 chrX 124829896 124830205 -37769725 + AluSx SINE Alu 1 309 -3 2672 48 0 3 chrX 124830205 124830516 -37769414 + AluY SINE Alu 1 310 -1 453 305 8 0 chrX 124830576 124830707 -37769223 - L2 LINE L2 0 3313 3182 2065 158 8 151 chrX 124830857 124831125 -37768805 + MLT1D LTR MaLR 1 306 -199 2209 122 0 0 chrX 124831125 124831420 -37768510 + AluSx SINE Alu 1 295 -17 2065 158 8 151 chrX 124831420 124831650 -37768280 + MLT1D LTR MaLR 306 567 62 2347 82 0 0 chrX 124831650 124831932 -37767998 + AluSp SINE Alu 1 282 -31 2552 60 0 3 chrX 124831933 124832232 -37767698 + AluY SINE Alu 1 298 -13 2065 158 8 151 chrX 124832232 124832249 -37767681 + MLT1D LTR MaLR 567 429 -76 301 41 0 41 chrX 124832249 124832298 -37767632 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2065 158 8 151 chrX 124832298 124832367 -37767563 + MLT1D LTR MaLR 428 505 0 294 268 84 42 chrX 124832511 124832653 -37767277 + MLT1L LTR MaLR 466 613 -2 2206 124 0 0 chrX 124832981 124833287 -37766643 + AluSx SINE Alu 1 306 -6 1187 236 70 94 chrX 124833318 124833656 -37766274 + LTR16C LTR ERVL 3 348 -143 504 0 0 0 chrX 124833656 124833712 -37766218 + (TTGTG)n Simple_repeat Simple_repeat 4 59 0 1837 72 112 16 chrX 124833712 124833863 -37766067 - AluSq SINE Alu -28 285 150 2344 81 0 23 chrX 124833863 124834171 -37765759 - AluSg SINE Alu -9 301 1 1837 72 112 16 chrX 124834171 124834269 -37765661 - AluSq SINE Alu -163 150 12 1187 236 70 94 chrX 124834269 124834429 -37765501 + LTR16C LTR ERVL 346 490 -1 370 362 16 0 chrX 124834431 124834558 -37765372 + HERV16 LTR ERVL 2 130 -4866 2330 98 7 0 chrX 124834729 124835024 -37764906 - AluSq SINE Alu -16 297 1 1742 188 3 7 chrX 124835059 124835351 -37764579 + AluJb SINE Alu 1 291 -21 1567 328 74 38 chrX 124835495 124836301 -37763629 + HERV16 LTR ERVL 728 1566 -3430 2241 144 21 18 chrX 124836301 124836690 -37763240 - MLT1B LTR MaLR 0 390 1 1567 328 74 38 chrX 124836690 124836703 -37763227 + HERV16 LTR ERVL 1566 1577 -3419 2099 138 3 0 chrX 124836739 124837037 -37762893 + AluSx SINE Alu 2 300 -12 2278 104 50 31 chrX 124837203 124837560 -37762370 + THE1B LTR MaLR 1 364 0 12160 88 3 1 chrX 124837575 124839127 -37760803 + THE1B-int LTR MaLR 26 1580 0 2149 129 50 31 chrX 124839127 124839484 -37760446 + THE1B LTR MaLR 1 364 0 704 136 144 8 chrX 124839658 124839783 -37760147 + AluSg/x SINE Alu 146 287 -23 32 43 0 0 chrX 124839953 124839999 -37759931 + AT_rich Low_complexity Low_complexity 1 46 0 328 313 31 12 chrX 124840086 124840342 -37759588 - L1M4 LINE L1 -1631 4515 4255 324 0 0 0 chrX 124840534 124840570 -37759360 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 802 161 0 0 chrX 124840573 124840691 -37759239 - FLAM_C SINE Alu -25 118 1 510 293 78 25 chrX 124840844 124841086 -37758844 - MLT1J LTR MaLR -248 263 9 759 254 49 35 chrX 124841098 124841264 -37758666 - L1M4 LINE L1 -1983 4163 4001 2112 135 24 0 chrX 124841264 124841560 -37758370 - AluSx SINE Alu -9 303 1 759 254 49 35 chrX 124841560 124841695 -37758235 - L1M4 LINE L1 -2145 4001 3854 992 149 0 42 chrX 124841695 124841863 -37758067 - FAM SINE Alu -14 161 1 759 254 49 35 chrX 124841863 124841906 -37758024 - L1M4 LINE L1 -2292 3854 3813 801 180 0 0 chrX 124841924 124842046 -37757884 - FLAM_C SINE Alu -20 123 2 310 286 18 9 chrX 124842068 124842180 -37757750 - L1M4 LINE L1 -2329 3817 3705 406 170 90 0 chrX 124842257 124842357 -37757573 + MER5C DNA MER1_type 16 124 -200 22 0 0 0 chrX 124842441 124842463 -37757467 + AT_rich Low_complexity Low_complexity 1 22 0 401 15 0 136 chrX 124842463 124842529 -37757401 - AluY SINE Alu -170 131 75 2217 105 0 10 chrX 124842531 124842826 -37757104 - AluSx SINE Alu -13 299 8 2376 74 0 16 chrX 124842841 124843152 -37756778 - AluSc SINE Alu -1 308 3 23 33 0 0 chrX 124843161 124843191 -37756739 + AT_rich Low_complexity Low_complexity 1 30 0 1961 136 27 0 chrX 124843287 124843581 -37756349 + AluSg SINE Alu 3 304 -6 722 139 26 86 chrX 124843716 124843867 -37756063 + FLAM_C SINE Alu 2 143 0 312 248 85 74 chrX 124843936 124844194 -37755736 - L1M4 LINE L1 -2685 3461 3201 315 0 0 0 chrX 124844496 124844531 -37755399 + (CCG)n Simple_repeat Simple_repeat 2 36 0 807 160 100 121 chrX 124844969 124845101 -37754829 - MER33 DNA MER1_type -2261 324 191 2196 98 0 0 chrX 124845101 124845376 -37754554 - AluSx SINE Alu -37 275 1 807 160 100 121 chrX 124845376 124845574 -37754356 - MER33 DNA MER1_type -2394 191 1 475 332 151 23 chrX 124846067 124846465 -37753465 + LTR16A LTR ERVL 1 449 -1 323 300 7 0 chrX 124846764 124846904 -37753026 - L1M4 LINE L1 -3128 3018 2878 1851 120 22 7 chrX 124846916 124847191 -37752739 - AluSx SINE Alu -7 305 27 180 0 0 0 chrX 124847191 124847211 -37752719 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1250 159 30 153 chrX 124847211 124847550 -37752380 - AluJo SINE Alu -5 297 1 21 0 0 0 chrX 124847617 124847638 -37752292 + AT_rich Low_complexity Low_complexity 1 21 0 1215 220 171 88 chrX 124848122 124848635 -37751295 - MLT1E LTR MaLR -37 556 1 2422 89 0 3 chrX 124848648 124848950 -37750980 - AluSq SINE Alu -12 301 1 1041 160 23 6 chrX 124849041 124849216 -37750714 + AluJb SINE Alu 120 297 -15 690 104 8 24 chrX 124849226 124849351 -37750579 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 2454 63 26 0 chrX 124849365 124849668 -37750262 + AluY SINE Alu 1 311 0 634 270 142 13 chrX 124849675 124849695 -37750235 - LTR33A LTR ERVL -182 341 325 387 0 0 0 chrX 124849695 124849738 -37750192 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 634 270 142 13 chrX 124849738 124849943 -37749987 - LTR33A LTR ERVL -198 325 87 518 274 91 53 chrX 124849947 124850108 -37749822 - HAL1 LINE L1 -1043 1464 1311 2543 61 0 0 chrX 124850108 124850405 -37749525 - AluSx SINE Alu -15 297 1 518 274 91 53 chrX 124850405 124850582 -37749348 - HAL1 LINE L1 -1196 1311 1113 252 222 0 0 chrX 124850760 124850814 -37749116 - MIR SINE MIR -27 235 182 31 0 0 0 chrX 124851311 124851342 -37748588 + AT_rich Low_complexity Low_complexity 1 31 0 364 121 17 0 chrX 124851344 124851402 -37748528 - U7 snRNA snRNA -2 61 3 2454 52 42 0 chrX 124851432 124851721 -37748209 + AluY SINE Alu 1 301 -10 2723 36 0 0 chrX 124851847 124852150 -37747780 + AluY SINE Alu 1 303 -8 58 0 0 0 chrX 124852164 124852222 -37747708 + AT_rich Low_complexity Low_complexity 1 58 0 2665 190 32 4 chrX 124852589 124853227 -37746703 + MER54A LTR ERVL 1 691 -210 1090 116 0 0 chrX 124853232 124853378 -37746552 - AluSq/x SINE Alu -167 146 1 230 182 91 0 chrX 124853412 124853478 -37746452 - Charlie8 DNA MER1_type 0 2417 2346 2338 84 3 7 chrX 124853591 124853889 -37746041 - AluSg SINE Alu -13 297 1 2256 112 13 0 chrX 124854001 124854305 -37745625 + AluSq SINE Alu 1 308 -5 250 183 17 17 chrX 124854593 124854653 -37745277 + L1MC2 LINE L1 6284 6343 -1 428 287 122 45 chrX 124854689 124854884 -37745046 - L1ME LINE L1 -303 5818 5639 2030 125 0 3 chrX 124854884 124855179 -37744751 + AluSg SINE Alu 1 294 -16 428 287 122 45 chrX 124855179 124855444 -37744486 - L1ME LINE L1 -482 5639 5314 378 249 97 48 chrX 124855456 124855621 -37744309 - L1ME LINE L1 -852 5294 5122 1408 162 3 44 chrX 124855633 124855956 -37743974 + AluJo SINE Alu 1 311 0 935 142 12 31 chrX 124855995 124856179 -37743751 - AluJo/FRAM SINE Alu 0 312 134 2299 79 3 9 chrX 124856179 124856494 -37743436 - AluSq SINE Alu 0 313 1 2621 78 133 3 chrX 124856561 124856946 -37742984 + LTR7 LTR ERV1 1 435 -15 398 64 0 0 chrX 124856946 124856993 -37742937 + LTR7 LTR ERV1 402 448 -2 2437 39 0 7 chrX 124857345 124857651 -37742279 - AluY SINE Alu -7 304 1 303 28 0 0 chrX 124857892 124857928 -37742002 + (TA)n Simple_repeat Simple_repeat 2 37 0 2045 35 0 19 chrX 124857928 124858186 -37741744 - AluY SINE Alu -1 310 58 2289 36 0 85 chrX 124858305 124858636 -37741294 - AluY SINE Alu -8 303 1 1307 236 159 12 chrX 124858663 124858810 -37741120 - L2 LINE L2 0 3313 3189 2084 107 0 0 chrX 124858810 124859121 -37740809 + AluSg SINE Alu 1 311 0 1307 236 159 12 chrX 124859121 124859646 -37740284 - L2 LINE L2 -124 3189 2559 297 171 0 0 chrX 124859817 124859905 -37740025 + CT-rich Low_complexity Low_complexity 1 88 0 317 353 35 71 chrX 124860421 124860591 -37739339 + L1MEd LINE L1 508 671 -5448 1985 120 3 0 chrX 124860599 124860883 -37739047 + AluSq SINE Alu 1 285 -28 2051 113 0 3 chrX 124860944 124861270 -37738660 + AluSg SINE Alu 1 325 0 1010 124 286 17 chrX 124861274 124861508 -37738422 + AluSg1 SINE Alu 1 297 -12 1941 131 0 20 chrX 124861692 124861998 -37737932 + AluJb SINE Alu 1 300 -12 340 227 109 36 chrX 124862034 124862238 -37737692 + L1M4 LINE L1 3962 4185 -1961 2048 120 16 3 chrX 124862238 124862547 -37737383 + AluSq SINE Alu 1 313 0 340 227 109 36 chrX 124862547 124862562 -37737368 + L1M4 LINE L1 4185 4197 -1949 1045 203 36 66 chrX 124862626 124862933 -37736997 + L1M4 LINE L1 5023 5338 -808 2463 68 0 0 chrX 124862933 124863244 -37736686 - AluY SINE Alu 0 311 1 1045 203 36 66 chrX 124863244 124863280 -37736650 + L1M4 LINE L1 5338 5306 -840 2174 73 3 57 chrX 124863280 124863597 -37736333 + AluSg SINE Alu 1 300 -10 1045 203 36 66 chrX 124863597 124863688 -37736242 + L1M4 LINE L1 5305 5397 -749 779 155 23 0 chrX 124863690 124863819 -37736111 + FLAM_C SINE Alu 2 133 -10 2105 103 0 3 chrX 124863823 124864115 -37735815 + AluSx SINE Alu 1 291 -21 528 197 26 17 chrX 124864129 124864246 -37735684 + L1M4 LINE L1 5387 5504 -670 2113 79 3 33 chrX 124864800 124865103 -37734827 + AluSp SINE Alu 1 294 -19 24 0 0 0 chrX 124865104 124865128 -37734802 + AT_rich Low_complexity Low_complexity 1 24 0 1195 149 6 65 chrX 124865339 124865703 -37734227 + L1MB7 LINE L1 5460 5956 -251 2087 119 3 0 chrX 124865835 124866138 -37733792 - AluSq SINE Alu -9 304 1 2079 122 0 22 chrX 124866165 124866484 -37733446 + AluSx SINE Alu 1 312 0 2034 123 0 0 chrX 124866940 124867225 -37732705 + AluSx SINE Alu 1 285 -27 279 0 0 0 chrX 124867225 124867256 -37732674 + (CA)n Simple_repeat Simple_repeat 2 32 0 1117 130 0 0 chrX 124867471 124867640 -37732290 - AluSc SINE Alu -37 272 104 712 323 101 69 chrX 124867672 124867700 -37732230 + HAL1b LINE L1 160 186 -1162 2076 115 3 22 chrX 124867700 124868013 -37731917 + AluSx SINE Alu 1 307 -5 712 323 101 69 chrX 124868013 124868650 -37731280 + HAL1b LINE L1 186 846 -502 737 149 0 52 chrX 124868716 124868850 -37731080 + FLAM_C SINE Alu 2 128 -5 2251 93 6 6 chrX 124868913 124869225 -37730705 + AluSq SINE Alu 1 312 -1 1141 60 5 33 chrX 124869233 124869417 -37730513 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1943 104 0 118 chrX 124869537 124869875 -37730055 - AluSx SINE Alu -4 298 1 420 249 80 58 chrX 124869994 124870304 -37729626 - L1 LINE L1 -2109 4037 3726 201 94 0 0 chrX 124870305 124870337 -37729593 + (TA)n Simple_repeat Simple_repeat 2 33 0 2213 91 0 0 chrX 124870338 124870625 -37729305 - AluSx SINE Alu -24 288 2 2386 54 3 0 chrX 124871054 124871350 -37728580 - AluY SINE Alu -14 297 1 813 167 0 0 chrX 124871416 124871542 -37728388 - FLAM_C SINE Alu -7 126 1 1532 182 28 0 chrX 124871584 124871875 -37728055 + AluJo SINE Alu 1 299 -13 824 136 0 0 chrX 124871877 124871995 -37727935 + AluSq/x SINE Alu 1 118 -195 25 51 0 0 chrX 124872005 124872044 -37727886 + AT_rich Low_complexity Low_complexity 1 39 0 2169 110 7 0 chrX 124872045 124872353 -37727577 - AluSx SINE Alu -1 311 2 321 214 0 0 chrX 124872404 124872474 -37727456 + Charlie8 DNA MER1_type 402 471 -1946 2372 126 60 8 chrX 124873033 124873430 -37726500 + MSTA LTR MaLR 1 418 -10 457 244 30 46 chrX 124873489 124873540 -37726390 - MLT1I LTR MaLR -1 408 358 1721 130 79 0 chrX 124873540 124873817 -37726113 + AluJb SINE Alu 1 299 -13 457 244 30 46 chrX 124873817 124873896 -37726034 - MLT1I LTR MaLR -51 358 280 1960 127 0 0 chrX 124873950 124874234 -37725696 + AluSx SINE Alu 1 284 -28 1981 115 4 0 chrX 124874446 124874725 -37725205 + AluSx SINE Alu 1 280 -32 243 0 0 0 chrX 124874728 124874755 -37725175 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1485 283 66 26 chrX 124874768 124875621 -37724309 - L1M4 LINE L1 -1897 4249 3315 2393 63 0 0 chrX 124875724 124876023 -37723907 + AluY SINE Alu 1 299 -12 2302 62 7 0 chrX 124876281 124876571 -37723359 + AluY SINE Alu 13 304 -7 506 150 0 0 chrX 124876585 124876665 -37723265 + AluJ/FLAM SINE Alu 6 85 -227 207 200 0 0 chrX 124876665 124876710 -37723220 + A-rich Low_complexity Low_complexity 4 48 0 223 301 43 0 chrX 124877456 124877549 -37722381 + L2 LINE L2 1931 2027 -1287 579 359 42 4 chrX 124878281 124878518 -37721412 - MIR SINE MIR -14 248 3 1596 97 118 50 chrX 124880304 124880583 -37719347 - AluSq SINE Alu -15 298 1 251 315 71 16 chrX 124880652 124880779 -37719151 + ERVL LTR ERVL 560 693 -5071 2175 127 0 0 chrX 124880831 124881139 -37718791 + AluSq SINE Alu 1 308 -5 1581 179 37 3 chrX 124881153 124881450 -37718480 + AluJb SINE Alu 1 307 -5 2093 110 7 0 chrX 124881700 124882001 -37717929 + AluSc SINE Alu 1 303 -6 339 200 31 0 chrX 124882039 124882104 -37717826 + L1M4 LINE L1 4398 4464 -1682 740 123 0 0 chrX 124882123 124882229 -37717701 + AluSg/x SINE Alu 203 308 -1 2058 88 20 20 chrX 124882238 124882532 -37717398 + AluSq SINE Alu 5 298 -15 2402 65 0 7 chrX 124882534 124882843 -37717087 + AluY SINE Alu 1 307 -4 1325 80 5 21 chrX 124882843 124883070 -37716860 + AluSp SINE Alu 108 313 0 879 219 0 0 chrX 124883073 124883233 -37716697 + AluJo/FRAM SINE Alu 137 296 -6 494 133 13 0 chrX 124883235 124883310 -37716620 - LTR9B LTR ERV1 -521 123 48 1869 120 26 13 chrX 124883310 124883618 -37716312 - AluSx SINE Alu 0 312 1 357 235 128 5 chrX 124883635 124883822 -37716108 - L1M4 LINE L1 -1975 4171 3962 1941 131 0 20 chrX 124883858 124884164 -37715766 - AluJb SINE Alu -12 300 1 1010 124 286 17 chrX 124884348 124884582 -37715348 - AluSg1 SINE Alu -12 297 1 2050 113 0 3 chrX 124884586 124884912 -37715018 - AluSg SINE Alu 0 325 1 1985 120 3 0 chrX 124884973 124885257 -37714673 - AluSq SINE Alu -28 285 1 317 353 35 71 chrX 124885265 124885435 -37714495 - L1MEd LINE L1 -5448 671 508 297 171 0 0 chrX 124885951 124886039 -37713891 + GA-rich Low_complexity Low_complexity 1 88 0 1307 236 159 12 chrX 124886210 124886735 -37713195 + L2 LINE L2 2559 3189 -124 2083 107 0 0 chrX 124886735 124887046 -37712884 - AluSg SINE Alu 0 311 1 1307 236 159 12 chrX 124887046 124887193 -37712737 + L2 LINE L2 3189 3313 0 2289 36 0 85 chrX 124887220 124887551 -37712379 + AluY SINE Alu 1 303 -8 1989 44 0 12 chrX 124887670 124887920 -37712010 + AluY SINE Alu 58 304 -7 1116 70 0 0 chrX 124888157 124888300 -37711630 + AluSq/x SINE Alu 1 143 -169 2187 69 3 57 chrX 124888373 124888690 -37711240 + AluSg SINE Alu 1 300 -10 423 167 0 0 chrX 124888709 124888781 -37711149 + L1MC3 LINE L1 5326 5397 -783 779 155 23 0 chrX 124888783 124888912 -37711018 + FLAM_C SINE Alu 2 133 -10 2105 103 0 3 chrX 124888916 124889208 -37710722 + AluSx SINE Alu 1 291 -21 528 197 26 17 chrX 124889222 124889339 -37710591 + L1MC3 LINE L1 5387 5504 -670 2113 79 3 33 chrX 124889893 124890196 -37709734 + AluSp SINE Alu 1 294 -19 24 0 0 0 chrX 124890197 124890221 -37709709 + AT_rich Low_complexity Low_complexity 1 24 0 1195 149 6 65 chrX 124890432 124890796 -37709134 + L1MB7 LINE L1 5460 5956 -251 2087 122 0 0 chrX 124890928 124891232 -37708698 - AluSq SINE Alu -9 304 1 2220 98 6 22 chrX 124891238 124891556 -37708374 - AluSp SINE Alu 0 313 1 2305 68 0 0 chrX 124891562 124891854 -37708076 - AluY SINE Alu -19 292 1 2237 77 13 0 chrX 124892072 124892370 -37707560 + AluY SINE Alu 1 302 -9 1284 143 36 0 chrX 124893235 124893458 -37706472 + L1MB7 LINE L1 5945 6175 -9 2356 47 20 3 chrX 124893697 124893995 -37705935 - AluY SINE Alu -8 303 1 2174 111 0 3 chrX 124894320 124894618 -37705312 + AluSx SINE Alu 1 297 -15 4725 187 47 4 chrX 124894835 124895332 -37704598 + L1MC3 LINE L1 5600 6074 -1711 2266 105 0 0 chrX 124895332 124895638 -37704292 + AluSg SINE Alu 1 306 -4 4725 187 47 4 chrX 124895638 124896086 -37703844 + L1MC3 LINE L1 6074 6589 -1196 1535 183 0 27 chrX 124896086 124896381 -37703549 + AluJo SINE Alu 2 288 -24 4725 187 47 4 chrX 124896381 124896397 -37703533 + L1MC3 LINE L1 6589 6603 -1182 1585 130 0 67 chrX 124896400 124896684 -37703246 + AluSx SINE Alu 5 269 -43 487 123 0 0 chrX 124896686 124896759 -37703171 + AluS SINE Alu 3 75 -236 1546 87 0 5 chrX 124896759 124896966 -37702964 - AluSg/x SINE Alu -10 302 97 26 30 0 0 chrX 124897066 124897099 -37702831 + AT_rich Low_complexity Low_complexity 1 33 0 2258 98 3 0 chrX 124897135 124897440 -37702490 - AluSx SINE Alu -5 307 2 1913 138 7 3 chrX 124897442 124897740 -37702190 - AluSx SINE Alu -8 304 6 985 96 0 7 chrX 124897746 124897882 -37702048 - AluSq/x SINE Alu -178 135 1 1556 184 0 0 chrX 124897886 124898180 -37701750 - AluSx SINE Alu -14 298 5 1879 138 10 6 chrX 124898451 124898762 -37701168 - AluSx SINE Alu 0 312 1 487 225 55 174 chrX 124898891 124899067 -37700863 - LTR33 LTR ERVL -236 285 156 2161 109 3 0 chrX 124899067 124899370 -37700560 + AluSp SINE Alu 1 304 -9 487 225 55 174 chrX 124899370 124899486 -37700444 - LTR33 LTR ERVL -365 156 28 518 105 13 0 chrX 124899486 124899562 -37700368 + AluS SINE Alu 2 78 -234 1715 114 110 0 chrX 124899666 124899929 -37700001 - AluSx SINE Alu -20 292 1 350 289 6 63 chrX 124899973 124900132 -37699798 + L2 LINE L2 3162 3311 -2 216 211 98 150 chrX 124900645 124900778 -37699152 - L2 LINE L2 -2 3270 3145 2032 131 0 0 chrX 124900817 124901129 -37698801 - AluSx SINE Alu 0 312 1 554 302 44 28 chrX 124901144 124901195 -37698735 - L1MC4a LINE L1 -1577 6231 6182 2264 93 3 0 chrX 124901195 124901505 -37698425 - AluSp SINE Alu -2 311 1 554 302 44 28 chrX 124901505 124901814 -37698116 - L1MC4a LINE L1 -1626 6182 5865 1748 119 8 0 chrX 124901821 124902073 -37697857 - AluSx SINE Alu -14 298 45 249 132 113 38 chrX 124902114 124902167 -37697763 - MER96 DNA MER1_type? -4 171 115 2165 76 6 41 chrX 124902524 124902841 -37697089 - AluSp SINE Alu -7 306 1 1798 160 0 7 chrX 124902842 124903142 -37696788 - AluJb SINE Alu -12 300 3 801 89 0 3 chrX 124903380 124903617 -37696313 + AluSg SINE Alu 6 303 -7 2454 47 0 0 chrX 124903855 124904155 -37695775 + AluY SINE Alu 1 300 -11 1990 125 7 0 chrX 124904155 124904457 -37695473 + AluSx SINE Alu 1 305 -7 457 353 8 4 chrX 124904461 124904702 -37695228 + L1M4 LINE L1 2374 2615 -3531 950 125 7 0 chrX 124904802 124904938 -37694992 + AluSg/x SINE Alu 158 294 -18 2074 133 17 0 chrX 124905007 124905309 -37694621 - AluSx SINE Alu -1 311 5 2177 123 0 0 chrX 124905418 124905711 -37694219 - AluSx SINE Alu -19 293 1 1260 102 0 32 chrX 124906360 124906546 -37693384 - AluSq SINE Alu 0 313 134 2600 52 3 0 chrX 124906546 124906853 -37693077 - AluY SINE Alu -3 308 1 1992 106 30 47 chrX 124906855 124907156 -37692774 - AluSg SINE Alu -14 296 1 21 0 0 0 chrX 124907156 124907177 -37692753 + AT_rich Low_complexity Low_complexity 1 21 0 572 119 12 0 chrX 124907249 124907333 -37692597 - AluJ/FRAM SINE Alu -10 302 218 663 220 107 6 chrX 124907622 124907781 -37692149 + MIR SINE MIR 12 186 -76 1053 108 17 0 chrX 124907894 124907931 -37691999 + (TCCC)n Simple_repeat Simple_repeat 1 216 0 1053 108 17 0 chrX 124907931 124908107 -37691823 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 850 208 44 0 chrX 124908163 124908322 -37691608 - AluJb SINE Alu -13 299 134 2301 76 4 0 chrX 124908322 124908599 -37691331 - AluSx SINE Alu -8 304 27 2218 124 0 0 chrX 124908909 124909207 -37690723 + AluSx SINE Alu 1 298 -14 1281 173 3 83 chrX 124909899 124910212 -37689718 + AluJo SINE Alu 25 312 0 439 225 27 18 chrX 124910380 124910491 -37689439 - MER81 DNA DNA -1 113 2 271 321 117 35 chrX 124911024 124911367 -37688563 - L2 LINE L2 -20 3252 2882 258 322 86 46 chrX 124911361 124911640 -37688290 - L2 LINE L2 -1287 2027 1734 * 2004 163 3 0 chrX 124911640 124911947 -37687983 + AluJb SINE Alu 1 308 -4 258 322 86 46 chrX 124911947 124911971 -37687959 - L2 LINE L2 -1580 1734 1712 507 95 0 0 chrX 124911971 124912045 -37687885 + (GGGA)n Simple_repeat Simple_repeat 2 75 0 372 164 0 0 chrX 124912101 124912174 -37687756 + LTR30 LTR ERV1 552 624 -98 222 37 0 0 chrX 124912178 124912205 -37687725 + (A)n Simple_repeat Simple_repeat 1 27 0 2240 88 11 3 chrX 124912258 124912564 -37687366 + AluSq SINE Alu 1 308 0 4257 116 52 28 chrX 124912837 124913262 -37686668 - LTR8 LTR ERV1 0 691 243 2144 141 0 3 chrX 124913262 124913575 -37686355 - AluJb SINE Alu 0 312 1 4257 116 52 28 chrX 124913575 124913824 -37686106 - LTR8 LTR ERV1 -448 243 1 1661 154 77 25 chrX 124914020 124914345 -37685585 + LTR47A LTR ERVL 1 342 -110 417 143 26 13 chrX 124914347 124914424 -37685506 - AluSg/x SINE Alu -15 294 217 2947 92 49 37 chrX 124914424 124914515 -37685415 - LTR9B LTR ERV1 -14 630 542 2798 17 0 0 chrX 124914515 124914817 -37685113 + AluY SINE Alu 1 302 -9 2947 92 49 37 chrX 124914817 124915234 -37684696 - LTR9B LTR ERV1 -102 542 116 2247 119 0 0 chrX 124915235 124915530 -37684400 + AluSg SINE Alu 1 295 -15 493 146 37 0 chrX 124915531 124915613 -37684317 + LTR47A LTR ERVL 368 452 0 2449 88 3 0 chrX 124915898 124916206 -37683724 - AluY SINE Alu -2 309 1 1836 71 69 126 chrX 124916538 124916714 -37683216 + MER51B LTR ERV1 1 149 -228 189 0 0 0 chrX 124916714 124916735 -37683195 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1836 71 69 126 chrX 124916735 124916908 -37683022 + MER51B LTR ERV1 149 330 -47 2427 100 0 0 chrX 124916908 124917219 -37682711 - AluSx SINE Alu -1 311 1 1196 52 0 0 chrX 124917219 124917353 -37682577 - AluSq/x SINE Alu -179 134 1 2364 89 0 0 chrX 124918275 124918568 -37681362 + AluSx SINE Alu 1 293 -19 2453 94 0 0 chrX 124918950 124919259 -37680671 + AluSq SINE Alu 1 309 -4 4017 151 142 17 chrX 124919620 124920387 -37679543 + MER21B LTR ERV1 1 863 0 364 148 0 168 chrX 124920472 124920573 -37679357 + MLT1C LTR MaLR 89 172 -218 1326 115 0 0 chrX 124920574 124920756 -37679174 + AluSp SINE Alu 130 311 -2 2446 88 0 0 chrX 124920761 124921058 -37678872 + AluSg SINE Alu 7 303 -7 644 231 75 7 chrX 124921061 124921208 -37678722 + FAM SINE Alu 1 157 -18 1025 176 124 29 chrX 124921221 124921494 -37678436 + MLT1C LTR MaLR 169 467 0 2119 108 4 4 chrX 124921547 124921859 -37678071 - AluSc SINE Alu 0 314 3 1965 152 3 0 chrX 124922028 124922324 -37677606 - AluSx SINE Alu -14 298 2 2526 58 3 7 chrX 124922429 124922737 -37677193 + AluSp SINE Alu 1 307 -6 1834 164 3 0 chrX 124922749 124923041 -37676889 + AluSx SINE Alu 2 294 -18 2313 95 0 3 chrX 124923045 124923339 -37676591 + AluSp SINE Alu 4 296 -17 2385 66 13 13 chrX 124923341 124923643 -37676287 + AluY SINE Alu 1 302 -9 2321 88 3 0 chrX 124923643 124923936 -37675994 + AluSp SINE Alu 1 295 -18 1040 186 0 0 chrX 124924377 124924549 -37675381 - FAM SINE Alu -3 172 1 2279 99 7 0 chrX 124924591 124924884 -37675046 + AluSx SINE Alu 1 295 -17 2417 81 3 10 chrX 124925298 124925605 -37674325 - AluSg SINE Alu -5 305 1 2362 104 3 0 chrX 124925616 124925925 -37674005 - AluSp SINE Alu -3 310 1 2175 93 47 0 chrX 124926258 124926537 -37673393 - AluSq SINE Alu -21 292 1 584 348 130 28 chrX 124926722 124927004 -37672926 + L2 LINE L2 145 397 -2917 2125 123 17 0 chrX 124927004 124927296 -37672634 + AluSx SINE Alu 4 300 -12 584 348 130 28 chrX 124927296 124927550 -37672380 + L2 LINE L2 397 736 -2578 350 284 9 18 chrX 124927902 124928011 -37671919 - L2 LINE L2 -9 3304 3197 204 308 39 54 chrX 124928035 124928165 -37671765 + MIR SINE MIR 134 261 -1 2196 86 0 36 chrX 124928355 124928658 -37671272 - AluSq SINE Alu -21 292 1 2289 93 0 17 chrX 124929598 124929898 -37670032 + AluSx SINE Alu 1 295 -17 646 144 152 8 chrX 124930121 124930253 -37669677 + REP3 LTR ERV 151 301 -261 43 64 0 0 chrX 124930253 124930331 -37669599 + AT_rich Low_complexity Low_complexity 1 78 0 951 242 18 40 chrX 124930341 124930456 -37669474 + REP3 LTR ERV 275 391 -171 1900 168 0 13 chrX 124930456 124930759 -37669171 - AluJo SINE Alu -13 299 1 951 242 18 40 chrX 124930759 124930916 -37669014 + REP3 LTR ERV 391 541 -21 1743 75 4 22 chrX 124930916 124931143 -37668787 - AluSg/x SINE Alu -18 294 72 664 93 31 21 chrX 124931145 124931242 -37668688 - AluSg/x SINE Alu -142 170 73 1179 80 68 12 chrX 124931242 124931404 -37668526 - AluSc SINE Alu -138 171 1 816 181 0 0 chrX 124931507 124931640 -37668290 + FLAM_C SINE Alu 1 133 0 1368 135 29 120 chrX 124931764 124931954 -37667976 - AluSq SINE Alu -3 310 163 369 0 0 0 chrX 124931954 124931995 -37667935 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1368 135 29 120 chrX 124931995 124932145 -37667785 - AluSq SINE Alu -150 163 1 2456 74 3 10 chrX 124932172 124932481 -37667449 - AluY SINE Alu -3 308 2 2182 136 3 0 chrX 124932482 124932777 -37667153 - AluSg SINE Alu -14 296 1 2227 112 7 0 chrX 124932812 124933115 -37666815 - AluSx SINE Alu -7 305 1 1139 84 0 0 chrX 124933188 124933331 -37666599 - AluSq/x SINE Alu -169 143 1 779 201 53 72 chrX 124933331 124933595 -37666335 + LTR37B LTR ERV1 135 393 -75 2366 104 0 0 chrX 124933605 124933913 -37666017 + AluSx SINE Alu 1 308 -4 855 136 94 42 chrX 124933916 124934107 -37665823 + L1MB7 LINE L1 5957 6157 -27 436 225 27 18 chrX 124934598 124934709 -37665221 - MER81 DNA DNA -1 113 2 216 0 0 0 chrX 124935631 124935655 -37664275 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1649 182 4 7 chrX 124935657 124935932 -37663998 - AluJo SINE Alu -31 281 8 261 163 0 0 chrX 124935937 124935980 -37663950 - L1MC/D LINE L1 -2077 5731 5689 621 151 11 0 chrX 124936156 124936249 -37663681 + AluJ/FLAM SINE Alu 9 102 -210 500 223 0 0 chrX 124936247 124936341 -37663589 + AluJo/FRAM SINE Alu 203 296 -16 * 2409 94 0 10 chrX 124936373 124936682 -37663248 + AluSx SINE Alu 1 306 -6 433 291 72 39 chrX 124936711 124937017 -37662913 + L1ME4a LINE L1 5347 5662 -459 2349 90 10 3 chrX 124937038 124937338 -37662592 + AluSq SINE Alu 1 302 -11 2075 120 3 51 chrX 124937347 124937663 -37662267 + AluSx SINE Alu 1 301 -11 514 114 0 0 chrX 124937829 124937899 -37662031 - U6 snRNA snRNA -37 70 1 357 243 226 28 chrX 124937930 124938111 -37661819 + L1ME4a LINE L1 5905 6121 0 2043 113 0 39 chrX 124938407 124938718 -37661212 - AluSx SINE Alu -13 299 1 1096 90 0 0 chrX 124938719 124938852 -37661078 - AluSq/x SINE Alu -178 134 2 201 69 0 0 chrX 124938871 124938885 -37661045 + (GA)n Simple_repeat Simple_repeat 2 15 -15 1682 174 3 33 chrX 124938885 124939027 -37660903 + AluJb SINE Alu 1 131 -181 2466 72 3 3 chrX 124939027 124939331 -37660599 + AluSp SINE Alu 1 304 -9 1682 174 3 33 chrX 124939331 124939487 -37660443 + AluJb SINE Alu 131 290 -22 201 69 0 0 chrX 124939487 124939501 -37660429 + (GA)n Simple_repeat Simple_repeat 14 30 0 2208 116 3 3 chrX 124939660 124939953 -37659977 - AluSx SINE Alu -19 293 1 2307 89 0 0 chrX 124940258 124940538 -37659392 - AluSc SINE Alu -29 280 1 677 179 37 8 chrX 124940718 124940852 -37659078 + FLAM_A SINE Alu 5 142 0 261 316 21 53 chrX 124940852 124940947 -37658983 - MIR SINE MIR -139 123 32 2049 113 7 11 chrX 124941118 124941401 -37658529 + AluSx SINE Alu 1 282 -30 511 155 0 0 chrX 124941429 124941500 -37658430 - FLAM_A SINE Alu -26 116 46 1208 189 5 14 chrX 124941556 124941773 -37658157 - AluJb SINE Alu -15 297 83 2306 97 0 7 chrX 124942097 124942396 -37657534 + AluSx SINE Alu 1 297 -15 1927 136 22 51 chrX 124942810 124943126 -37656804 - AluSx SINE Alu -5 307 1 1907 162 0 7 chrX 124943615 124943911 -37656019 - AluJb SINE Alu -18 294 1 1373 149 178 4 chrX 124944033 124944305 -37655625 - AluJb SINE Alu 0 314 1 2342 99 0 7 chrX 124944383 124944687 -37655243 + AluSq SINE Alu 1 302 -11 2175 126 3 7 chrX 124944687 124944997 -37654933 + AluSg SINE Alu 1 309 -1 2241 70 42 7 chrX 124945001 124945288 -37654642 + AluY SINE Alu 2 298 -13 1549 144 63 4 chrX 124945395 124945666 -37654264 + AluSx SINE Alu 1 287 -25 386 111 64 41 chrX 124945670 124945841 -37654089 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 373 77 77 34 chrX 124945844 124945961 -37653969 + (TA)n Simple_repeat Simple_repeat 2 123 0 2047 134 7 7 chrX 124945987 124946120 -37653810 + AluSx SINE Alu 1 133 -179 2313 95 0 28 chrX 124946120 124946437 -37653493 + AluSg SINE Alu 1 308 -2 2047 134 7 7 chrX 124946437 124946608 -37653322 + AluSx SINE Alu 132 305 -7 2213 52 45 34 chrX 124946622 124946913 -37653017 - AluY SINE Alu -17 294 1 183 129 0 0 chrX 124947343 124947374 -37652556 + (A)n Simple_repeat Simple_repeat 1 31 0 889 132 0 0 chrX 124947377 124947498 -37652432 + AluY SINE Alu 1 121 -190 450 0 6 0 chrX 124947498 124947591 -37652339 + (CA)n Simple_repeat Simple_repeat 2 51 0 1542 79 0 120 chrX 124947591 124947677 -37652253 + AluY SINE Alu 73 168 -143 414 0 0 0 chrX 124947677 124947723 -37652207 + (CA)n Simple_repeat Simple_repeat 2 47 0 1542 79 0 120 chrX 124947723 124947903 -37652027 + AluY SINE Alu 168 307 -4 224 336 10 48 chrX 124947905 124948009 -37651921 + L2 LINE L2 3168 3267 -5 24 85 0 0 chrX 124948164 124948223 -37651707 + AT_rich Low_complexity Low_complexity 1 59 0 233 228 0 0 chrX 124948284 124948341 -37651589 + A-rich Low_complexity Low_complexity 1 57 0 242 340 93 0 chrX 124948467 124948564 -37651366 + MIR SINE MIR 47 152 -56 1936 93 70 30 chrX 124948564 124948865 -37651065 + AluSp SINE Alu 1 313 0 1488 87 14 34 chrX 124948865 124949072 -37650858 + AluSq SINE Alu 108 310 -3 256 279 15 15 chrX 124949197 124949265 -37650665 - FLAM SINE Alu 0 133 66 2235 122 0 22 chrX 124949843 124950162 -37649768 + AluSx SINE Alu 1 312 0 2296 131 0 0 chrX 124950618 124950930 -37649000 + AluSx SINE Alu 1 312 0 237 329 194 23 chrX 124950979 124951283 -37648647 - L2 LINE L2 -676 2638 2283 2298 92 14 0 chrX 124951422 124951716 -37648214 + AluSx SINE Alu 1 298 -14 1280 179 50 50 chrX 124951825 124952054 -37647876 + L1M4 LINE L1 4942 5170 -976 2472 63 13 0 chrX 124952054 124952353 -37647577 + AluSp SINE Alu 2 304 -9 1280 179 50 50 chrX 124952353 124952399 -37647531 + L1M4 LINE L1 5170 5215 -931 2211 117 0 10 chrX 124952399 124952706 -37647224 + AluSg SINE Alu 1 304 -6 1280 179 50 50 chrX 124952706 124952810 -37647120 + L1M4 LINE L1 5214 5322 -824 300 167 0 0 chrX 124952817 124952865 -37647065 + L1M LINE L1 5265 5312 -862 1926 162 7 3 chrX 124952914 124953217 -37646713 + AluJb SINE Alu 1 304 -8 1589 121 0 0 chrX 124953219 124953426 -37646504 + AluSq SINE Alu 1 207 -106 2400 88 3 0 chrX 124953572 124953878 -37646052 + AluSp SINE Alu 1 307 -6 2206 67 0 28 chrX 124953884 124954199 -37645731 + AluY SINE Alu 5 311 0 1656 189 70 104 chrX 124954200 124954570 -37645360 + LTR8A LTR ERV1 187 568 -159 244 159 0 0 chrX 124954570 124954622 -37645308 + Alu SINE Alu 1 35 -267 610 138 276 0 chrX 124954587 124954703 -37645227 + AluJo/FRAM SINE Alu 137 284 -18 583 99 0 0 chrX 124954622 124954703 -37645227 + AluSg/x SINE Alu 204 333 0 266 61 20 20 chrX 124954703 124954752 -37645178 + (CAAA)n Simple_repeat Simple_repeat 2 172 0 1656 189 70 104 chrX 124954752 124954923 -37645007 + LTR8A LTR ERV1 566 727 0 3522 106 13 63 chrX 124954923 124955260 -37644670 + L1MA4A LINE L1 5499 5851 -452 2224 107 0 7 chrX 124955260 124955560 -37644370 + AluSx SINE Alu 1 298 -14 3522 106 13 63 chrX 124955560 124955694 -37644236 + L1MA4A LINE L1 5851 5990 -313 2095 125 7 0 chrX 124955694 124955991 -37643939 + AluSq SINE Alu 1 299 -14 2574 60 0 0 chrX 124955991 124956293 -37643637 + AluY SINE Alu 1 302 -9 3522 106 13 63 chrX 124956293 124956421 -37643509 + L1MA4A LINE L1 5988 6070 -233 2188 125 0 3 chrX 124956422 124956735 -37643195 + AluSx SINE Alu 1 312 0 638 124 19 9 chrX 124956749 124956854 -37643076 + MER4A LTR ERV1 2 107 -557 2097 124 51 93 chrX 124956857 124956997 -37642933 + MER4A LTR ERV1 272 416 -248 2258 102 3 10 chrX 124956997 124957301 -37642629 + AluSc SINE Alu 1 302 -7 2097 124 51 93 chrX 124957301 124957570 -37642360 + MER4A LTR ERV1 416 664 0 1916 163 151 35 chrX 124957583 124958074 -37641856 + LTR10A LTR ERV1 1 548 -61 1370 96 20 0 chrX 124958099 124958298 -37641632 + L1MA4 LINE L1 6082 6284 -16 1689 135 23 8 chrX 124958298 124958564 -37641366 - AluJb SINE Alu -20 292 23 345 283 84 18 chrX 124958850 124959016 -37640914 + L2 LINE L2 2567 2743 -571 198 322 22 33 chrX 124959040 124959130 -37640800 + MER5B DNA MER1_type 2 90 -88 234 116 0 0 chrX 124959174 124959217 -37640713 + (TTCTCC)n Simple_repeat Simple_repeat 1 43 0 1865 175 0 0 chrX 124959217 124959520 -37640410 - AluJb SINE Alu -9 303 1 1159 174 5 0 chrX 124959520 124959710 -37640220 - MER31A LTR ERV1 -43 442 252 1176 178 20 103 chrX 124959771 124959850 -37640080 - MER31B LTR ERV1 -198 268 184 803 153 15 0 chrX 124959850 124959981 -37639949 + AluJo/FLAM SINE Alu 1 133 -169 2377 88 3 16 chrX 124959984 124960266 -37639664 + AluSq SINE Alu 1 280 -33 390 21 0 0 chrX 124960266 124960313 -37639617 + (CA)n Simple_repeat Simple_repeat 2 48 0 2377 88 3 16 chrX 124960313 124960337 -37639593 + AluSq SINE Alu 280 303 -10 1176 178 20 103 chrX 124960337 124960545 -37639385 - MER31B LTR ERV1 -284 182 1 234 245 0 0 chrX 124960824 124960873 -37639057 - L2 LINE L2 -557 2757 2709 284 288 0 93 chrX 124960915 124960942 -37638988 + MIR SINE MIR 137 165 -97 2153 126 3 3 chrX 124960942 124961244 -37638686 + AluSx SINE Alu 1 302 -10 284 288 0 93 chrX 124961244 124961355 -37638575 + MIR SINE MIR 165 262 0 2434 63 0 0 chrX 124961399 124961686 -37638244 - AluY SINE Alu -24 287 1 2581 14 46 0 chrX 124962486 124962771 -37637159 - AluY SINE Alu -13 298 1 2239 85 30 3 chrX 124962771 124963066 -37636864 - AluSq SINE Alu -10 303 1 330 263 0 0 chrX 124963338 124963418 -37636512 - MER116 DNA Mariner 0 80 1 1142 219 36 89 chrX 124963668 124963868 -37636062 - L2 LINE L2 0 3313 3145 2502 71 7 3 chrX 124963868 124964177 -37635753 + AluSp SINE Alu 2 311 -2 1142 219 36 89 chrX 124964177 124964391 -37635539 - L2 LINE L2 -168 3145 2921 1744 199 118 92 chrX 124964456 124964734 -37635196 - MLT1F LTR MaLR 0 542 244 714 109 0 0 chrX 124964734 124964835 -37635095 - HY3 scRNA scRNA 0 101 1 1744 199 118 92 chrX 124964835 124965075 -37634855 - MLT1F LTR MaLR -298 244 11 1258 207 90 9 chrX 124965081 124965415 -37634515 - L2 LINE L2 -511 2803 2443 482 31 265 31 chrX 124965558 124965656 -37634274 + L1MB3 LINE L1 6047 6167 -16 48 0 0 0 chrX 124965656 124965704 -37634226 + AT_rich Low_complexity Low_complexity 1 48 0 2550 58 0 3 chrX 124965704 124966013 -37633917 - AluY SINE Alu -3 308 1 2299 107 0 0 chrX 124966015 124966323 -37633607 - AluSx SINE Alu -4 308 1 280 93 0 0 chrX 124966323 124966366 -37633564 + L1MB4 LINE L1 6136 6178 -2 247 0 0 0 chrX 124966481 124966517 -37633413 - Alu SINE Alu 0 302 267 389 270 103 59 chrX 124967032 124967236 -37632694 + MIR SINE MIR 34 246 -16 277 313 0 0 chrX 124967988 124968055 -37631875 + C-rich Low_complexity Low_complexity 4 70 0 408 333 136 6 chrX 124968781 124968958 -37630972 - MIR3 SINE MIR -2 206 7 207 293 0 13 chrX 124969365 124969440 -37630490 + (TA)n Simple_repeat Simple_repeat 2 75 0 385 113 0 48 chrX 124969666 124969728 -37630202 + U6 snRNA snRNA 1 59 -48 2116 99 32 0 chrX 124969756 124970040 -37629890 - AluSx SINE Alu -19 293 1 1348 90 0 0 chrX 124970046 124970212 -37629718 - AluSq SINE Alu -16 297 132 1939 138 21 0 chrX 124970252 124970541 -37629389 + AluSq SINE Alu 3 297 -16 1431 131 0 9 chrX 124970562 124970783 -37629147 + AluJb SINE Alu 86 304 -8 2123 131 0 0 chrX 124970840 124971137 -37628793 + AluSx SINE Alu 1 297 -15 1974 85 74 21 chrX 124971183 124971466 -37628464 - AluSp SINE Alu -15 298 1 217 340 93 0 chrX 124971466 124971563 -37628367 - MIR SINE MIR -56 152 47 233 228 0 0 chrX 124971689 124971746 -37628184 + T-rich Low_complexity Low_complexity 1 57 0 24 85 0 0 chrX 124971807 124971866 -37628064 + AT_rich Low_complexity Low_complexity 1 59 0 196 205 0 0 chrX 124972028 124972067 -37627863 - MIR SINE MIR -6 256 218 1519 79 0 120 chrX 124972127 124972307 -37627623 - AluY SINE Alu -4 307 168 414 0 0 0 chrX 124972307 124972353 -37627577 + (TG)n Simple_repeat Simple_repeat 2 47 0 1519 79 0 120 chrX 124972353 124972439 -37627491 - AluY SINE Alu -143 168 73 450 0 0 0 chrX 124972439 124972489 -37627441 + (TG)n Simple_repeat Simple_repeat 2 51 0 180 0 0 0 chrX 124972512 124972532 -37627398 + (TG)n Simple_repeat Simple_repeat 2 21 0 881 132 0 0 chrX 124972532 124972653 -37627277 - AluY SINE Alu -190 121 1 183 129 0 0 chrX 124972656 124972687 -37627243 + (T)n Simple_repeat Simple_repeat 1 31 0 2209 52 45 34 chrX 124973117 124973408 -37626522 + AluY SINE Alu 1 294 -17 2016 134 7 7 chrX 124973422 124973593 -37626337 - AluSx SINE Alu -7 305 132 2291 95 0 28 chrX 124973593 124973910 -37626020 - AluSg SINE Alu -2 308 1 2016 134 7 7 chrX 124973910 124974043 -37625887 - AluSx SINE Alu -179 133 1 373 77 77 34 chrX 124974069 124974186 -37625744 + (TA)n Simple_repeat Simple_repeat 2 123 0 386 111 64 41 chrX 124974189 124974360 -37625570 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 1521 107 92 33 chrX 124974364 124974635 -37625295 - AluSx SINE Alu -25 287 1 2230 70 42 7 chrX 124974742 124975029 -37624901 - AluY SINE Alu -13 298 2 2145 126 3 7 chrX 124975033 124975343 -37624587 - AluSg SINE Alu -1 309 1 2323 99 0 7 chrX 124975343 124975647 -37624283 - AluSq SINE Alu -11 302 1 1354 149 178 4 chrX 124975725 124975997 -37623933 + AluJb SINE Alu 1 314 0 1878 162 0 7 chrX 124976119 124976415 -37623515 + AluJb SINE Alu 1 294 -18 1892 136 22 51 chrX 124976904 124977220 -37622710 + AluSx SINE Alu 1 307 -5 2285 90 0 13 chrX 124977634 124977933 -37621997 - AluSx SINE Alu -17 295 1 1178 189 5 14 chrX 124978257 124978474 -37621456 + AluJb SINE Alu 83 297 -15 497 155 0 0 chrX 124978530 124978601 -37621329 + FLAM_A SINE Alu 46 116 -26 2038 113 7 11 chrX 124978629 124978912 -37621018 - AluSx SINE Alu -30 282 1 232 316 21 53 chrX 124979083 124979178 -37620752 + MIR SINE MIR 32 123 -139 656 179 37 8 chrX 124979178 124979312 -37620618 - FLAM_A SINE Alu 0 142 5 2299 89 0 0 chrX 124979492 124979772 -37620158 + AluSc SINE Alu 1 280 -29 2189 116 3 3 chrX 124980077 124980370 -37619560 + AluSx SINE Alu 1 293 -19 201 69 0 0 chrX 124980529 124980543 -37619387 + (TC)n Simple_repeat Simple_repeat 2 15 -15 1633 177 3 33 chrX 124980543 124980699 -37619231 - AluJb SINE Alu -22 290 146 2443 66 3 10 chrX 124980699 124981003 -37618927 - AluSp SINE Alu -11 302 1 1633 177 3 33 chrX 124981003 124981145 -37618785 - AluJb SINE Alu -166 146 1 201 69 0 0 chrX 124981145 124981159 -37618771 + (TC)n Simple_repeat Simple_repeat 14 30 0 1087 90 0 0 chrX 124981178 124981311 -37618619 + AluSq/x SINE Alu 2 134 -179 2056 113 0 35 chrX 124981312 124981622 -37618308 + AluSx SINE Alu 1 299 -13 545 114 0 0 chrX 124982130 124982200 -37617730 + U6 snRNA snRNA 1 70 -37 2031 120 3 57 chrX 124982366 124982683 -37617247 - AluSx SINE Alu -12 300 1 2331 90 10 3 chrX 124982692 124982992 -37616938 - AluSq SINE Alu -11 302 1 504 291 72 39 chrX 124983013 124983319 -37616611 - L1ME LINE L1 -459 5662 5347 2393 91 0 0 chrX 124983361 124983657 -37616273 - AluSx SINE Alu -16 296 1 500 215 0 0 chrX 124983689 124983782 -37616148 - AluJo/FRAM SINE Alu -16 296 204 641 149 0 0 chrX 124983782 124983876 -37616054 - AluJ/FLAM SINE Alu -210 102 9 276 163 0 0 chrX 124984052 124984095 -37615835 + L1MC/D LINE L1 5689 5731 -2077 1625 182 4 7 chrX 124984100 124984401 -37615529 + AluJo SINE Alu 8 307 0 2304 111 0 3 chrX 124984740 124985038 -37614892 - AluSx SINE Alu -15 297 1 2485 47 20 3 chrX 124985363 124985661 -37614269 + AluY SINE Alu 1 303 -8 1298 143 36 0 chrX 124985900 124986123 -37613807 - L1MB7 LINE L1 -9 6175 5945 2412 77 10 0 chrX 124986987 124987286 -37612644 - AluY SINE Alu -9 302 1 2434 68 0 0 chrX 124987504 124987796 -37612134 + AluY SINE Alu 1 292 -19 2345 98 6 22 chrX 124987802 124988120 -37611810 + AluSp SINE Alu 1 313 0 2257 116 0 0 chrX 124988126 124988428 -37611502 + AluSq SINE Alu 1 302 -11 2224 114 7 3 chrX 124989428 124989726 -37610204 - AluSx SINE Alu -13 299 1 885 316 95 77 chrX 124989853 124990453 -37609477 - L3 LINE CR1 -102 1475 887 2146 86 13 51 chrX 124990453 124990766 -37609164 - AluSx SINE Alu -11 301 1 2177 111 0 3 chrX 124990766 124991055 -37608875 - AluSx SINE Alu -24 288 1 885 316 95 77 chrX 124991055 124991127 -37608803 - L3 LINE CR1 -689 888 790 2494 87 3 0 chrX 124991155 124991467 -37608463 - AluSp SINE Alu 0 313 1 430 18 18 0 chrX 124991476 124991533 -37608397 - HY1 scRNA scRNA -1 111 54 2293 88 7 3 chrX 124991873 124992169 -37607761 + AluSp SINE Alu 1 297 -16 663 213 0 0 chrX 124992300 124992422 -37607508 - MER94 DNA DNA 0 134 13 191 229 133 24 chrX 124994508 124994591 -37605339 - MIR SINE MIR 0 262 171 2271 97 7 0 chrX 124994591 124994889 -37605041 - AluSp SINE Alu -13 300 1 1083 47 31 0 chrX 124994889 124995018 -37604912 - AluSg SINE Alu -177 133 1 2427 82 0 0 chrX 124995373 124995665 -37604265 + AluSq SINE Alu 1 292 -21 324 48 0 0 chrX 124995672 124995714 -37604216 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2171 128 0 3 chrX 124995724 124996021 -37603909 + AluSx SINE Alu 2 297 -15 2093 87 7 55 chrX 124996597 124996763 -37603167 - AluSq SINE Alu -19 294 148 2281 62 0 4 chrX 124996763 124997035 -37602895 - AluSc SINE Alu -12 297 27 2093 87 7 55 chrX 124997035 124997177 -37602753 - AluSq SINE Alu -165 148 1 2202 120 0 3 chrX 124997191 124997490 -37602440 - AluSq SINE Alu -15 298 1 2912 10 0 0 chrX 124997676 124997987 -37601943 - AluY SINE Alu 0 311 1 1905 131 0 51 chrX 124998017 124998329 -37601601 + AluJo SINE Alu 5 300 -12 2348 102 3 0 chrX 124998331 124998635 -37601295 + AluSx SINE Alu 1 305 -7 22 99 0 0 chrX 124998997 124999068 -37600862 + AT_rich Low_complexity Low_complexity 1 71 0 1786 153 10 26 chrX 124999208 124999516 -37600414 + AluJo SINE Alu 1 303 -9 2294 91 0 3 chrX 124999756 125000070 -37599860 + AluSq SINE Alu 2 314 0 395 211 55 18 chrX 125000162 125000271 -37599659 + MIR3 SINE MIR 89 201 -7 2275 85 0 4 chrX 125000485 125000791 -37599139 - AluSg SINE Alu 0 305 1 2243 93 0 32 chrX 125000909 125001219 -37598711 + AluSc SINE Alu 1 300 -9 1927 127 74 0 chrX 125001253 125001537 -37598393 + AluSg SINE Alu 1 305 -5 402 213 62 24 chrX 125001897 125002023 -37597907 - MIR SINE MIR -62 146 34 2181 123 3 3 chrX 125002158 125002466 -37597464 + AluSq SINE Alu 1 308 -5 945 191 0 0 chrX 125002466 125002668 -37597262 + AluSg/x SINE Alu 132 333 0 3843 145 72 63 chrX 125002729 125003435 -37596495 - L1MB7 LINE L1 -106 6078 5380 2261 117 0 0 chrX 125003435 125003733 -37596197 - AluSx SINE Alu -14 298 1 1894 162 7 3 chrX 125003735 125004038 -37595892 - AluJb SINE Alu -8 304 1 3843 145 72 63 chrX 125004038 125004135 -37595795 - L1MB7 LINE L1 -804 5380 5265 1379 171 50 50 chrX 125004142 125004246 -37595684 - L1M4 LINE L1 -824 5322 5219 2188 117 0 10 chrX 125004246 125004553 -37595377 - AluSg SINE Alu -6 304 1 1379 171 50 50 chrX 125004553 125004599 -37595331 - L1M4 LINE L1 -927 5219 5174 2458 63 13 0 chrX 125004599 125004898 -37595032 - AluSp SINE Alu -9 304 2 1379 171 50 50 chrX 125004898 125005127 -37594803 - L1M4 LINE L1 -971 5175 4942 2280 92 14 0 chrX 125005236 125005530 -37594400 - AluSx SINE Alu -14 298 1 191 326 194 23 chrX 125005669 125005973 -37593957 + L2 LINE L2 2283 2638 -676 1543 129 80 52 chrX 125006002 125006325 -37593605 - AluY SINE Alu 0 311 1 672 178 39 8 chrX 125006334 125006463 -37593467 - AluSq/x SINE Alu -179 134 2 2443 81 3 7 chrX 125006510 125006817 -37593113 + AluSg SINE Alu 1 306 -4 349 190 38 0 chrX 125006817 125006975 -37592955 + (TATATG)n Simple_repeat Simple_repeat 3 166 0 31 68 0 0 chrX 125007038 125007097 -37592833 + AT_rich Low_complexity Low_complexity 1 59 0 1996 183 60 60 chrX 125007109 125007589 -37592341 - L1ME3 LINE L1 -71 6091 5612 183 390 49 0 chrX 125007751 125007833 -37592097 - L3 LINE CR1 -1426 151 66 404 167 0 0 chrX 125008398 125008458 -37591472 + AluS SINE Alu 2 61 -257 1487 155 33 92 chrX 125008490 125008826 -37591104 - MLT1A2 LTR MaLR 0 374 59 1400 144 19 0 chrX 125008852 125009060 -37590870 + AluJb SINE Alu 75 286 -26 1687 95 0 13 chrX 125009490 125009721 -37590209 - AluSg/x SINE Alu 0 310 83 21 0 0 0 chrX 125010121 125010142 -37589788 + AT_rich Low_complexity Low_complexity 1 21 0 275 294 123 59 chrX 125010801 125010852 -37589078 - MIR3 SINE MIR -5 203 157 2426 98 3 0 chrX 125010852 125011159 -37588771 - AluSp SINE Alu -5 308 1 275 294 123 59 chrX 125011159 125011277 -37588653 - MIR3 SINE MIR -51 157 23 198 128 0 0 chrX 125011281 125011320 -37588610 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 881 137 48 0 chrX 125011334 125011480 -37588450 - L1MB2 LINE L1 -7 6164 6012 1100 154 0 0 chrX 125011480 125011649 -37588281 + FRAM SINE Alu 3 171 -5 575 135 40 3 chrX 125011650 125011755 -37588175 - L1MB2 LINE L1 -144 6027 5918 1151 54 20 7 chrX 125011759 125011908 -37588022 - BC200 scRNA scRNA -49 151 1 230 326 41 10 chrX 125012168 125012266 -37587664 + L2 LINE L2 2999 3099 -173 294 29 0 0 chrX 125012272 125012307 -37587623 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2243 85 0 31 chrX 125012309 125012602 -37587328 - AluSx SINE Alu -28 284 1 340 320 74 78 chrX 125012790 125013373 -37586557 + L2 LINE L2 2684 3267 -5 218 179 0 0 chrX 125013494 125013533 -37586397 + (TACTG)n Simple_repeat Simple_repeat 1 39 0 325 282 78 0 chrX 125013561 125013664 -37586266 + MER5A DNA MER1_type 79 189 0 218 222 0 0 chrX 125013721 125013766 -37586164 + MIR SINE MIR 191 235 -27 546 325 119 6 chrX 125013899 125014210 -37585720 + L2 LINE L2 2206 2551 -763 312 314 58 8 chrX 125014486 125014607 -37585323 + L2 LINE L2 3142 3268 -4 510 208 76 97 chrX 125015459 125015747 -37584183 + L1ME4a LINE L1 5834 6115 -6 2215 103 3 13 chrX 125016691 125017002 -37582928 - AluSx SINE Alu -4 308 1 2638 52 3 0 chrX 125018259 125018567 -37581363 + AluY SINE Alu 1 309 -2 210 282 115 0 chrX 125018627 125018705 -37581225 + MIR SINE MIR 121 207 -55 2545 54 3 0 chrX 125018867 125019162 -37580768 + AluSp SINE Alu 1 296 -17 1111 156 0 0 chrX 125019190 125019357 -37580573 + AluJo SINE Alu 124 290 -22 21 36 0 0 chrX 125019369 125019397 -37580533 + AT_rich Low_complexity Low_complexity 1 28 0 581 253 53 0 chrX 125019520 125019670 -37580260 - MIR3 SINE MIR -2 206 49 400 247 0 0 chrX 125019820 125019897 -37580033 - MER2 DNA MER2_type -1 344 268 238 29 59 0 chrX 125019967 125020001 -37579929 - MER2 DNA MER2_type -134 211 176 261 122 20 0 chrX 125020057 125020106 -37579824 - MER2 DNA MER2_type -170 175 126 1340 163 5 0 chrX 125020109 125020318 -37579612 + AluJb SINE Alu 85 294 -18 1367 139 170 19 chrX 125020358 125020617 -37579313 - AluSx SINE Alu -14 298 1 943 104 7 7 chrX 125020617 125020752 -37579178 - AluSq/x SINE Alu -177 135 1 314 213 113 0 chrX 125020759 125020839 -37579091 - MER2 DNA MER2_type -256 89 1 2117 113 7 0 chrX 125020862 125021164 -37578766 + AluSx SINE Alu 2 305 -7 2219 110 13 10 chrX 125022112 125022285 -37577645 - AluSx SINE Alu -1 311 135 2327 101 3 0 chrX 125022285 125022582 -37577348 - AluSx SINE Alu -14 298 1 2219 110 13 10 chrX 125022582 125022718 -37577212 - AluSx SINE Alu -177 135 1 472 249 69 26 chrX 125022946 125023135 -37576795 - L1MC5 LINE L1 -50 7911 7715 947 118 0 15 chrX 125023136 125023271 -37576659 - AluJb SINE Alu -179 133 1 233 130 43 0 chrX 125023279 125023325 -37576605 + CT-rich Low_complexity Low_complexity 3 50 0 1688 90 0 5 chrX 125023325 125023537 -37576393 - AluSp SINE Alu -102 211 1 2659 42 0 7 chrX 125023644 125023954 -37575976 + AluY SINE Alu 1 308 -3 2690 30 0 0 chrX 125024129 125024425 -37575505 + AluY SINE Alu 7 302 -9 672 202 67 3 chrX 125024459 125024616 -37575314 + MER5A DNA MER1_type 2 189 0 418 54 0 0 chrX 125025199 125025255 -37574675 - Alu SINE Alu -254 57 2 887 228 0 0 chrX 125025341 125025508 -37574422 + FAM SINE Alu 1 46 -3 2213 110 0 16 chrX 125026373 125026681 -37573249 + AluJb SINE Alu 3 305 -7 225 194 15 30 chrX 125026785 125026852 -37573078 + MIR SINE MIR 157 222 -40 2401 53 0 3 chrX 125027338 125027651 -37572279 - AluY SINE Alu 0 312 1 348 283 158 11 chrX 125027664 125027848 -37572082 - MIR SINE MIR -46 216 6 218 315 56 11 chrX 125028240 125028329 -37571601 + L2 LINE L2 3168 3260 -12 213 154 0 0 chrX 125028343 125028382 -37571548 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 1857 82 131 0 chrX 125028473 125028741 -37571189 - AluSp SINE Alu 0 303 1 1045 175 12 0 chrX 125028744 125028915 -37571015 - AluSg/x SINE Alu -6 306 134 2483 75 3 0 chrX 125028915 125029220 -37570710 - AluSc SINE Alu -3 306 1 2263 102 3 0 chrX 125029221 125029515 -37570415 - AluSg SINE Alu -15 295 1 2325 73 0 7 chrX 125029526 125029870 -37570060 - AluY SINE Alu 0 342 1 2166 121 27 0 chrX 125030342 125030640 -37569290 + AluSx SINE Alu 1 306 -6 2459 83 0 0 chrX 125031383 125031695 -37568235 - AluSx SINE Alu 0 312 1 1863 140 3 53 chrX 125032457 125032778 -37567152 - AluJo SINE Alu -7 305 1 927 192 43 14 chrX 125033149 125033357 -37566573 + L1MD2 LINE L1 5917 6130 -229 484 191 21 0 chrX 125033357 125033451 -37566479 + FRAM SINE Alu 1 96 -80 1826 168 0 14 chrX 125033484 125033674 -37566256 - AluSx SINE Alu 0 323 137 2203 110 3 7 chrX 125033674 125033993 -37565937 - AluSq SINE Alu 0 313 1 1826 168 0 14 chrX 125033993 125034129 -37565801 - AluSx SINE Alu -186 137 1 2451 74 10 0 chrX 125034138 125034437 -37565493 - AluSg SINE Alu -8 302 1 216 349 130 0 chrX 125034486 125034632 -37565298 + L2 LINE L2 3107 3271 -1 2533 47 0 10 chrX 125034639 125034936 -37564994 + AluY SINE Alu 1 294 -17 1503 88 5 0 chrX 125034936 125035121 -37564809 + AluSq SINE Alu 105 293 -20 230 313 90 22 chrX 125035375 125035509 -37564421 + L2 LINE L2 2867 3009 -263 1463 238 142 19 chrX 125035520 125036000 -37563930 - MLT1H LTR MaLR 0 549 11 231 167 0 0 chrX 125036038 125036080 -37563850 + (TATG)n Simple_repeat Simple_repeat 3 44 0 778 172 0 8 chrX 125036193 125036321 -37563609 + FLAM_C SINE Alu 3 129 -4 1085 169 149 8 chrX 125036509 125036775 -37563155 + AluYa5 SINE Alu 6 305 0 217 307 135 58 chrX 125036911 125036984 -37562946 + L2 LINE L2 2554 2620 -694 1791 92 114 48 chrX 125036984 125037257 -37562673 - AluSp SINE Alu -22 291 1 217 307 135 58 chrX 125037257 125037509 -37562421 + L2 LINE L2 2620 2904 -410 1885 153 7 26 chrX 125037632 125037940 -37561990 + AluJb SINE Alu 1 302 -10 1848 126 50 68 chrX 125038153 125038314 -37561616 + THE1C LTR MaLR 1 163 -212 2638 65 0 0 chrX 125038314 125038623 -37561307 - AluSc SINE Alu 0 309 1 1848 126 50 68 chrX 125038623 125038841 -37561089 + THE1C LTR MaLR 163 373 -2 9366 110 16 108 chrX 125038844 125039214 -37560716 + THE1C-int LTR MaLR 1 403 -1177 741 119 0 0 chrX 125039214 125039323 -37560607 - AluSp/q SINE Alu 0 313 205 9366 110 16 108 chrX 125039323 125039354 -37560576 + THE1C-int LTR MaLR 403 435 -1145 2139 106 34 0 chrX 125039354 125039647 -37560283 - AluSp SINE Alu -10 303 1 9366 110 16 108 chrX 125039647 125040621 -37559309 + THE1C-int LTR MaLR 435 1497 -83 2203 91 18 0 chrX 125040621 125040928 -37559002 - AluSp SINE Alu 0 316 5 9366 110 16 108 chrX 125040928 125041100 -37558830 + THE1C-int LTR MaLR 1497 1495 -85 2226 117 0 7 chrX 125041100 125041399 -37558531 + AluSx SINE Alu 1 297 -15 9366 110 16 108 chrX 125041399 125041479 -37558451 + THE1C-int LTR MaLR 1494 1580 0 1926 147 68 14 chrX 125041480 125041835 -37558095 + THE1C LTR MaLR 2 375 0 259 284 30 71 chrX 125041905 125042018 -37557912 + MIR SINE MIR 89 194 -68 2029 128 7 7 chrX 125042018 125042307 -37557623 + AluJb SINE Alu 1 289 -23 259 284 30 71 chrX 125042307 125042362 -37557568 + MIR SINE MIR 194 250 -12 216 0 0 0 chrX 125042416 125042440 -37557490 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 1521 123 0 0 chrX 125042484 125042688 -37557242 - AluJb SINE Alu -14 298 95 360 169 0 17 chrX 125042688 125042747 -37557183 - AluS SINE Alu -236 63 6 338 147 15 0 chrX 125042748 125042816 -37557114 + CT-rich Low_complexity Low_complexity 2 70 0 1033 169 7 0 chrX 125042817 125042971 -37556959 - FAM SINE Alu -30 155 1 2134 123 0 3 chrX 125043167 125043459 -37556471 + AluSx SINE Alu 1 291 -21 230 221 105 93 chrX 125043459 125043537 -37556393 - AluSg/x SINE Alu -16 284 203 583 187 0 0 chrX 125043550 125043641 -37556289 - FLAM_A SINE Alu -48 94 4 300 179 0 48 chrX 125043645 125043729 -37556201 + MIR SINE MIR 100 179 -83 2428 91 7 0 chrX 125043762 125044070 -37555860 + AluSg SINE Alu 1 310 0 1757 146 41 27 chrX 125044128 125044423 -37555507 + AluJb SINE Alu 1 299 -13 861 231 27 32 chrX 125044616 125044837 -37555093 - AluJo SINE Alu -92 220 1 2499 59 0 19 chrX 125044848 125045155 -37554775 - AluY SINE Alu -10 301 1 2296 68 41 3 chrX 125045389 125045681 -37554249 + AluSg SINE Alu 1 303 -7 488 285 51 25 chrX 125045819 125046054 -37553876 + L1ME3A LINE L1 5689 5929 -241 1164 129 0 0 chrX 125046119 125046282 -37553648 - AluSq SINE Alu -16 297 135 2158 110 0 36 chrX 125046441 125046750 -37553180 - AluSx SINE Alu -14 298 1 1806 179 172 41 chrX 125046751 125047173 -37552757 + MLT2B1 LTR ERVL 2 490 -30 423 0 0 0 chrX 125047173 125047220 -37552710 + (CA)n Simple_repeat Simple_repeat 2 48 0 1806 179 172 41 chrX 125047220 125047256 -37552674 + MLT2B1 LTR ERVL 490 520 0 2416 62 28 0 chrX 125047288 125047577 -37552353 - AluY SINE Alu -14 297 1 1727 155 14 7 chrX 125047614 125047891 -37552039 - AluJb SINE Alu -33 279 1 2337 90 17 0 chrX 125047900 125048200 -37551730 - AluSq SINE Alu -8 305 1 243 0 0 0 chrX 125049139 125049166 -37550764 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1056 95 14 14 chrX 125049194 125049341 -37550589 - AluSg SINE Alu -163 147 1 2118 113 0 0 chrX 125049513 125049817 -37550113 - AluSx SINE Alu 0 304 1 2301 107 10 0 chrX 125050186 125050486 -37549444 - AluSg SINE Alu -7 303 1 21 0 0 0 chrX 125051124 125051145 -37548785 + AT_rich Low_complexity Low_complexity 1 21 0 181 143 61 61 chrX 125051544 125051593 -37548337 - L2 LINE L2 0 3313 3265 2381 97 0 3 chrX 125051915 125052215 -37547715 + AluSx SINE Alu 2 300 -12 21 36 0 0 chrX 125052456 125052484 -37547446 + AT_rich Low_complexity Low_complexity 1 28 0 1983 142 0 13 chrX 125052500 125052803 -37547127 - AluJb SINE Alu -13 299 1 961 203 25 20 chrX 125052938 125053135 -37546795 + MER63A DNA MER1_type 11 208 -2 815 145 0 113 chrX 125053163 125053250 -37546680 - L1MC4 LINE L1 -131 7911 7816 2538 59 7 0 chrX 125053250 125053554 -37546376 - AluY SINE Alu -5 306 1 2320 78 24 0 chrX 125053564 125053860 -37546070 - AluY SINE Alu -8 303 1 815 145 0 113 chrX 125053860 125053947 -37545983 - L1MC4 LINE L1 -236 7806 7747 2214 126 3 0 chrX 125053949 125054250 -37545680 + AluSx SINE Alu 3 304 -8 218 284 0 0 chrX 125054494 125054561 -37545369 + T-rich Low_complexity Low_complexity 1 67 0 2511 90 0 0 chrX 125054934 125055244 -37544686 + AluSg SINE Alu 1 310 0 791 149 0 16 chrX 125055881 125056002 -37543928 - FRAM SINE Alu -16 160 42 21 0 0 0 chrX 125056004 125056025 -37543905 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chrX 125056008 125056039 -37543891 + (TA)n Simple_repeat Simple_repeat 1 31 0 1331 137 0 23 chrX 125056039 125056258 -37543672 - AluJb SINE Alu -12 300 87 26 0 0 0 chrX 125056434 125056460 -37543470 + AT_rich Low_complexity Low_complexity 1 26 0 857 124 0 16 chrX 125056460 125056581 -37543349 - FLAM_C SINE Alu -19 124 6 281 345 36 48 chrX 125056703 125056789 -37543141 + L2 LINE L2 3102 3187 -85 1361 161 130 68 chrX 125056789 125056862 -37543068 - MER2 DNA MER2_type 0 344 277 2311 93 0 13 chrX 125056862 125057175 -37542755 + AluSc SINE Alu 1 309 0 1361 161 130 68 chrX 125057175 125057424 -37542506 - MER2 DNA MER2_type -67 277 2 281 345 36 48 chrX 125057424 125057505 -37542425 + L2 LINE L2 3187 3267 -5 1074 148 59 40 chrX 125057536 125057738 -37542192 - MER3 DNA MER1_type -3 206 1 1347 141 0 28 chrX 125057786 125057999 -37541931 + AluJo SINE Alu 84 290 -22 213 182 18 73 chrX 125058013 125058068 -37541862 - L2 LINE L2 -35 3278 3227 1886 162 14 7 chrX 125058271 125058435 -37541495 - AluJb SINE Alu -4 298 130 1535 90 9 40 chrX 125058435 125058607 -37541323 - AluSg/x SINE Alu -10 302 137 2200 103 7 0 chrX 125058607 125058907 -37541023 - AluSg SINE Alu -8 302 1 1535 90 9 40 chrX 125058907 125058956 -37540974 - AluSg/x SINE Alu -175 137 88 1886 162 14 7 chrX 125058956 125059087 -37540843 - AluJb SINE Alu -172 130 1 1987 100 57 7 chrX 125059090 125059371 -37540559 - AluSg SINE Alu -15 295 1 686 151 118 25 chrX 125059374 125059493 -37540437 - AluJo/FLAM SINE Alu -172 130 1 401 238 0 0 chrX 125059563 125059643 -37540287 - L2 LINE L2 -1 3312 3233 366 294 49 76 chrX 125059747 125059823 -37540107 + MER5A DNA MER1_type 11 88 -101 1824 160 0 16 chrX 125059823 125060129 -37539801 + AluJb SINE Alu 7 307 -5 366 294 49 76 chrX 125060129 125060236 -37539694 + MER5A DNA MER1_type 88 189 0 225 328 30 0 chrX 125060245 125060379 -37539551 + (TAAG)n Simple_repeat Simple_repeat 2 139 0 2462 57 3 7 chrX 125060497 125060796 -37539134 + AluSg1 SINE Alu 1 298 -11 1661 74 0 78 chrX 125060807 125061050 -37538880 + AluY SINE Alu 88 311 0 1337 146 175 61 chrX 125061428 125061708 -37538222 - AluJb SINE Alu 0 312 1 2849 205 84 35 chrX 125061760 125062233 -37537697 - L1MD2 LINE L1 -17 6342 5815 2252 124 0 0 chrX 125062233 125062540 -37537390 - AluSq SINE Alu -6 307 1 2849 205 84 35 chrX 125062540 125062842 -37537088 - L1MD2 LINE L1 -544 5815 5529 201 263 0 0 chrX 125062850 125062907 -37537023 + A-rich Low_complexity Low_complexity 1 57 0 830 160 0 8 chrX 125062986 125063111 -37536819 + FLAM_C SINE Alu 2 125 -18 620 256 67 54 chrX 125063135 125063225 -37536705 - L1ME4a LINE L1 -161 5960 5873 2527 40 0 17 chrX 125063225 125063526 -37536404 - AluY SINE Alu -15 296 1 620 256 67 54 chrX 125063526 125063823 -37536107 - L1ME4a LINE L1 -248 5873 5566 848 168 15 0 chrX 125063824 125063955 -37535975 - FLAM_C SINE Alu -10 133 1 487 278 59 51 chrX 125063989 125064103 -37535827 - L1ME4a LINE L1 -616 5550 5438 2119 93 48 0 chrX 125064103 125064392 -37535538 - AluSc SINE Alu -6 303 1 487 278 59 51 chrX 125064392 125064465 -37535465 - L1ME4a LINE L1 -728 5438 5367 2337 97 0 0 chrX 125064465 125064773 -37535157 - AluY SINE Alu -3 308 1 487 278 59 51 chrX 125064773 125065001 -37534929 - L1ME4a LINE L1 -799 5367 5135 2317 88 3 3 chrX 125065066 125065371 -37534559 + AluSx SINE Alu 6 310 -2 23 0 0 0 chrX 125065371 125065394 -37534536 + AT_rich Low_complexity Low_complexity 1 23 0 429 20 0 0 chrX 125068274 125068324 -37531606 + (A)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chrX 125068764 125068787 -37531143 + GC_rich Low_complexity Low_complexity 1 23 0 334 132 15 15 chrX 125069327 125069395 -37530535 + CT-rich Low_complexity Low_complexity 4 71 0 334 167 100 67 chrX 125071630 125071750 -37528180 + L1MC5 LINE L1 7774 7897 -64 1811 134 16 36 chrX 125073383 125073689 -37526241 + AluJb SINE Alu 1 300 -12 2267 89 7 3 chrX 125073852 125074143 -37525787 + AluSg SINE Alu 1 292 -18 2225 91 7 7 chrX 125074558 125074855 -37525075 - AluSq SINE Alu -16 297 1 2488 71 3 3 chrX 125074928 125075237 -37524693 - AluSp SINE Alu -4 309 1 1880 125 39 133 chrX 125075256 125075577 -37524353 - Tigger3(Golem) DNA MER2_type 0 3029 2680 2204 116 0 0 chrX 125075577 125075870 -37524060 - AluSg SINE Alu -17 293 1 1880 125 39 133 chrX 125075870 125075932 -37523998 - Tigger3(Golem) DNA MER2_type -349 2680 1 1666 160 7 10 chrX 125076049 125076337 -37523593 + AluJo SINE Alu 1 287 -25 335 315 178 20 chrX 125076495 125076641 -37523289 - MIR SINE MIR -74 188 20 2160 117 7 3 chrX 125077309 125077618 -37522312 - AluSq SINE Alu -3 310 1 243 0 0 0 chrX 125077624 125077651 -37522279 + (T)n Simple_repeat Simple_repeat 1 27 0 860 153 43 120 chrX 125077928 125078137 -37521793 + MER105 DNA DNA 12 204 0 360 296 31 0 chrX 125078443 125078541 -37521389 - MIR SINE MIR 0 262 162 373 197 0 0 chrX 125078541 125078602 -37521328 + MER94 DNA DNA 1 61 -73 258 65 0 0 chrX 125078596 125078627 -37521303 + U2 snRNA snRNA 1 31 -157 * 282 249 149 3 chrX 125078688 125078811 -37521119 - MIR SINE MIR -16 192 50 2199 105 7 3 chrX 125078819 125079115 -37520815 + AluSx SINE Alu 1 297 -15 2451 41 34 3 chrX 125079948 125080242 -37519688 - AluY SINE Alu -8 303 1 1580 138 0 115 chrX 125080408 125080757 -37519173 + AluSg1 SINE Alu 1 309 0 2320 82 0 13 chrX 125080929 125081232 -37518698 + AluSc SINE Alu 1 299 -10 2314 105 3 0 chrX 125081234 125081530 -37518400 + AluSp SINE Alu 1 297 -16 205 254 48 16 chrX 125081544 125081607 -37518323 - L2 LINE L2 -62 3210 3146 2079 134 23 3 chrX 125081892 125082198 -37517732 - AluSx SINE Alu 0 312 1 2409 89 0 0 chrX 125082246 125082548 -37517382 - AluSg SINE Alu -8 302 1 2314 72 3 7 chrX 125083143 125083434 -37516496 - AluSp SINE Alu -22 291 2 1653 154 46 11 chrX 125083675 125083955 -37515975 + AluJo SINE Alu 2 291 -21 373 244 221 23 chrX 125084345 125084517 -37515413 - MIR SINE MIR -25 237 32 555 282 12 24 chrX 125085333 125085503 -37514427 - MIR SINE MIR -65 197 30 1941 155 3 7 chrX 125085504 125085814 -37514116 - AluJb SINE Alu -3 309 1 2003 56 97 4 chrX 125085832 125086099 -37513831 - L1PA11 LINE L1 0 6174 5883 1085 123 132 97 chrX 125086336 125086564 -37513366 + MER46A DNA MER2_type 1 236 0 322 241 203 0 chrX 125086650 125086783 -37513147 - MIR SINE MIR -12 250 91 * 694 282 197 24 chrX 125086780 125087120 -37512810 + L2 LINE L2 2912 3310 -3 2726 163 55 31 chrX 125088798 125088973 -37510957 - L1MB3 LINE L1 0 6183 6014 201 39 0 0 chrX 125088973 125088999 -37510931 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 2726 163 55 31 chrX 125088999 125089369 -37510561 - L1MB3 LINE L1 -169 6014 5625 586 276 24 0 chrX 125089371 125089494 -37510436 - L2 LINE L2 -13 3259 3134 1629 175 21 7 chrX 125089731 125090022 -37509908 + AluJo SINE Alu 2 296 -16 1998 100 16 88 chrX 125090038 125090358 -37509572 - AluSx SINE Alu -15 297 1 234 156 0 0 chrX 125090406 125090451 -37509479 + T-rich Low_complexity Low_complexity 1 45 0 280 336 0 9 chrX 125090577 125090684 -37509246 - L1MB3 LINE L1 -487 5634 5529 2364 93 6 3 chrX 125091637 125091949 -37507981 - AluSp SINE Alu 0 313 1 489 297 135 0 chrX 125092095 125092280 -37507650 + L2 LINE L2 3104 3313 0 31 36 0 18 chrX 125092305 125092327 -37507603 + AT_rich Low_complexity Low_complexity 1 22 -33 1579 157 35 21 chrX 125092327 125092614 -37507316 - AluJb SINE Alu -21 291 1 31 36 0 18 chrX 125092614 125092647 -37507283 + AT_rich Low_complexity Low_complexity 22 55 0 1285 171 0 5 chrX 125092903 125093120 -37506810 - AluJo SINE Alu -14 298 83 1441 160 0 35 chrX 125093240 125093496 -37506434 - AluJo SINE Alu -12 300 54 268 302 23 78 chrX 125093527 125093656 -37506274 - MIR SINE MIR -66 142 21 203 317 17 0 chrX 125093655 125093715 -37506215 - L3 LINE CR1 -2 1575 1515 * 637 104 6 58 chrX 125093715 125093888 -37506042 + (TA)n Simple_repeat Simple_repeat 2 165 0 24 67 0 0 chrX 125093891 125093936 -37505994 + AT_rich Low_complexity Low_complexity 1 45 0 239 250 40 53 chrX 125093942 125094018 -37505912 - MIR3 SINE MIR -119 89 15 725 170 0 88 chrX 125094567 125094663 -37505267 - AluJo SINE Alu -94 218 115 2349 72 3 7 chrX 125094663 125094954 -37504976 - AluSg SINE Alu -13 297 8 1973 106 4 0 chrX 125094955 125095219 -37504711 - AluSx SINE Alu -47 265 1 725 170 0 88 chrX 125095219 125095267 -37504663 - AluJo SINE Alu -196 116 85 2355 97 0 0 chrX 125097264 125097572 -37502358 - AluSg1 SINE Alu 0 309 2 2632 128 225 36 chrX 125097655 125098188 -37501742 - MER51A LTR ERV1 0 634 1 205 331 94 87 chrX 125098497 125098796 -37501134 + L2 LINE L2 2896 3196 -76 1673 153 68 56 chrX 125098898 125099029 -37500901 - MER2 DNA MER2_type 0 344 216 2341 95 0 0 chrX 125099029 125099324 -37500606 - AluSx SINE Alu -17 295 1 2379 63 13 13 chrX 125099333 125099636 -37500294 - AluSp SINE Alu -10 303 1 1673 153 68 56 chrX 125099636 125099834 -37500096 - MER2 DNA MER2_type -135 209 1 28 29 0 0 chrX 125100079 125100114 -37499816 + AT_rich Low_complexity Low_complexity 1 35 0 1841 158 0 3 chrX 125100219 125100511 -37499419 - AluJb SINE Alu -21 291 1 645 152 161 0 chrX 125100855 125100967 -37498963 + AluJb SINE Alu 1 130 -182 296 370 75 23 chrX 125101368 125101541 -37498389 + MER5A DNA MER1_type 7 188 -1 2769 134 17 47 chrX 125101649 125102120 -37497810 - MSTB2 LTR MaLR 0 457 1 211 267 50 17 chrX 125102457 125102517 -37497413 + MIR SINE MIR 49 110 -152 2418 73 0 0 chrX 125103092 125103381 -37496549 + AluY SINE Alu 9 297 -14 642 223 48 53 chrX 125103661 125103849 -37496081 + L1MC/D LINE L1 5434 5620 -2188 21 0 0 0 chrX 125103926 125103947 -37495983 + AT_rich Low_complexity Low_complexity 1 21 0 2100 186 26 37 chrX 125104059 125104522 -37495408 - L1ME1 LINE L1 -8 6158 5701 2062 162 61 14 chrX 125104522 125104947 -37494983 - L1ME1 LINE L1 -1105 5041 4597 2813 162 75 66 chrX 125104963 125105314 -37494616 - L1MB3 LINE L1 -7 6176 5830 2159 114 0 10 chrX 125105314 125105612 -37494318 - AluSx SINE Alu -17 295 1 2813 162 75 66 chrX 125105612 125105840 -37494090 - L1MB3 LINE L1 -353 5830 5605 2064 126 7 13 chrX 125105840 125106142 -37493788 - AluSx SINE Alu -12 300 1 2813 162 75 66 chrX 125106142 125106248 -37493682 - L1MB3 LINE L1 -578 5605 5501 501 47 0 0 chrX 125106248 125106312 -37493618 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 2813 162 75 66 chrX 125106312 125106408 -37493522 - L1MB3 LINE L1 -682 5501 5377 1447 117 131 50 chrX 125106509 125106792 -37493138 + AluJo SINE Alu 1 306 -6 242 218 55 0 chrX 125107079 125107134 -37492796 + CT-rich Low_complexity Low_complexity 3 60 0 1334 157 0 58 chrX 125107134 125107283 -37492647 - AluJo SINE Alu -31 281 150 1682 159 10 13 chrX 125107283 125107585 -37492345 - AluJb SINE Alu -11 301 1 1334 157 0 58 chrX 125107585 125107677 -37492253 - AluJo SINE Alu -162 150 54 6208 126 90 21 chrX 125107747 125108059 -37491871 + Tigger3b DNA MER2_type 1 290 -2738 1896 145 0 35 chrX 125108059 125108370 -37491560 + AluJb SINE Alu 1 300 -12 6208 126 90 21 chrX 125108370 125108766 -37491164 + Tigger3b DNA MER2_type 290 657 -2371 2327 85 0 0 chrX 125108766 125109061 -37490869 - AluY SINE Alu -16 295 1 6208 126 90 21 chrX 125109061 125109153 -37490777 + Tigger3b DNA MER2_type 657 741 -2287 197 33 33 0 chrX 125109153 125109183 -37490747 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 6208 126 90 21 chrX 125109183 125109530 -37490400 + Tigger3b DNA MER2_type 741 1230 -1 1388 161 72 48 chrX 125109618 125109909 -37490021 + AluJo SINE Alu 6 303 -9 355 171 0 0 chrX 125110036 125110099 -37489831 + AluJ/FLAM SINE Alu 24 79 -223 1697 112 25 106 chrX 125110305 125110627 -37489303 - AluYb8 SINE Alu -22 296 1 2228 112 3 0 chrX 125110635 125110938 -37488992 - AluSx SINE Alu -8 304 1 2307 72 3 29 chrX 125111089 125111395 -37488535 - AluSq SINE Alu -15 298 1 280 215 15 0 chrX 125111413 125111478 -37488452 - L1MC5 LINE L1 -897 7064 6999 767 119 45 8 chrX 125111654 125111788 -37488142 - L1MB3 LINE L1 -9 6174 6036 2045 131 58 45 chrX 125111970 125112368 -37487562 - L1MB3 LINE L1 -119 6064 5662 3291 206 43 61 chrX 125112456 125112605 -37487325 - L1MC4a LINE L1 -1 7807 7657 1442 177 90 22 chrX 125112605 125112927 -37487003 + MER2 DNA MER2_type 1 344 0 3291 206 43 61 chrX 125112927 125113039 -37486891 - L1MC4a LINE L1 -151 7657 7544 204 40 0 0 chrX 125113039 125113064 -37486866 + (CACCAT)n Simple_repeat Simple_repeat 2 26 0 3291 206 43 61 chrX 125113064 125113413 -37486517 - L1MC4a LINE L1 -264 7544 7190 2454 135 75 9 chrX 125113413 125113851 -37486079 - MLT1C LTR MaLR 0 467 1 3291 206 43 61 chrX 125113851 125114108 -37485822 - L1MC4a LINE L1 -618 7190 6930 2471 67 0 3 chrX 125114108 125114408 -37485522 - AluY SINE Alu -10 301 3 3291 206 43 61 chrX 125114408 125114524 -37485406 - L1MC4a LINE L1 -878 6930 5369 906 219 6 77 chrX 125114663 125114987 -37484943 - AluJo SINE Alu 0 302 2 517 279 117 82 chrX 125114998 125115399 -37484531 - L1MC4a LINE L1 -1457 6351 5937 2520 69 3 0 chrX 125115878 125116184 -37483746 - AluSp SINE Alu -6 307 1 738 160 25 0 chrX 125116194 125116313 -37483617 - FLAM_C SINE Alu -10 123 2 22 35 0 0 chrX 125116746 125116775 -37483155 + AT_rich Low_complexity Low_complexity 1 29 0 597 94 0 0 chrX 125117064 125117149 -37482781 + (TAGG)n Simple_repeat Simple_repeat 2 86 0 1903 147 61 10 chrX 125117801 125118196 -37481734 - L1MB2 LINE L1 -2 6169 5755 4761 184 43 30 chrX 125118196 125118261 -37481669 - L1MB2 LINE L1 -1334 4812 4749 996 200 19 24 chrX 125118261 125118471 -37481459 + MER6B DNA MER2_type 1 209 -1 4761 184 43 30 chrX 125118471 125119215 -37480715 - L1MB2 LINE L1 -1397 4749 3981 2589 133 31 2 chrX 125119215 125119630 -37480300 - MSTC LTR MaLR -1 427 1 4761 184 43 30 chrX 125119630 125119953 -37479977 - L1MB2 LINE L1 -2165 3981 3664 390 74 0 0 chrX 125120972 125121026 -37478904 + (CA)n Simple_repeat Simple_repeat 2 55 0 2174 106 7 0 chrX 125122039 125122332 -37477598 - AluSx SINE Alu -17 295 1 2496 61 3 3 chrX 125122646 125122957 -37476973 - AluY SINE Alu 0 311 1 2042 115 35 0 chrX 125123056 125123344 -37476586 - AluSg SINE Alu -12 298 1 1058 142 12 6 chrX 125123815 125123977 -37475953 - AluJb SINE Alu -15 297 135 22 0 0 0 chrX 125124057 125124079 -37475851 + AT_rich Low_complexity Low_complexity 1 22 0 1082 172 0 0 chrX 125124358 125124521 -37475409 + AluJb SINE Alu 3 165 -147 2150 112 0 7 chrX 125124885 125125181 -37474749 - AluSg SINE Alu -16 294 1 552 68 0 0 chrX 125126118 125126191 -37473739 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 1718 186 0 0 chrX 125126192 125126472 -37473458 - AluJo SINE Alu -32 280 1 2457 66 17 0 chrX 125126724 125127026 -37472904 - AluY SINE Alu -4 307 1 295 306 51 10 chrX 125127106 125127204 -37472726 + L2 LINE L2 3208 3309 -4 1848 159 0 7 chrX 125127325 125127608 -37472322 + AluJb SINE Alu 1 281 -31 1010 151 25 6 chrX 125128206 125128365 -37471565 + FRAM SINE Alu 1 154 -22 431 107 0 0 chrX 125128396 125128452 -37471478 - AluSx SINE Alu -27 283 228 1454 105 0 0 chrX 125128452 125128643 -37471287 - AluSx SINE Alu -121 191 1 2447 83 0 0 chrX 125129760 125130062 -37469868 + AluSx SINE Alu 1 302 -10 268 321 119 30 chrX 125132764 125132898 -37467032 - MIR3 SINE MIR 0 208 63 387 0 0 0 chrX 125133800 125133843 -37466087 + (TAA)n Simple_repeat Simple_repeat 2 44 0 265 308 80 22 chrX 125134289 125134513 -37465417 - L1ME4a LINE L1 -38 6083 5847 23 33 0 0 chrX 125134532 125134562 -37465368 + AT_rich Low_complexity Low_complexity 1 30 0 1445 158 0 92 chrX 125134562 125134890 -37465040 - AluJo SINE Alu -14 298 1 227 224 147 77 chrX 125135292 125135435 -37464495 - MIR SINE MIR 0 262 110 519 170 43 0 chrX 125135881 125135975 -37463955 - Tigger7 DNA MER2_type -1 2490 2393 * 1337 201 72 0 chrX 125135973 125136222 -37463708 - Tigger7 DNA MER2_type -466 267 1 261 0 0 0 chrX 125136466 125136495 -37463435 + (TA)n Simple_repeat Simple_repeat 1 29 0 781 178 0 0 chrX 125136495 125136624 -37463306 - FLAM_C SINE Alu -4 129 1 264 127 0 0 chrX 125136630 125136685 -37463245 + (TA)n Simple_repeat Simple_repeat 2 56 0 2422 69 0 3 chrX 125136685 125136988 -37462942 - AluY SINE Alu -9 302 1 2103 106 3 3 chrX 125137000 125137282 -37462648 - AluSx SINE Alu -30 282 1 502 215 21 0 chrX 125137306 125137399 -37462531 + MER58C DNA MER1_type 121 215 0 840 223 85 45 chrX 125138187 125138434 -37461496 - MIR SINE MIR 0 262 6 1938 137 0 7 chrX 125139006 125139198 -37460732 - AluSx SINE Alu 0 325 134 292 70 18 18 chrX 125139198 125139255 -37460675 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 1938 137 0 7 chrX 125139255 125139389 -37460541 - AluSx SINE Alu -191 134 1 2302 80 3 0 chrX 125139395 125139701 -37460229 - AluSx SINE Alu 0 307 1 24 53 0 0 chrX 125140093 125140131 -37459799 + AT_rich Low_complexity Low_complexity 1 38 0 1399 170 67 20 chrX 125140145 125140472 -37459458 - L1PA16 LINE L1 -2 6163 5796 1177 172 40 41 chrX 125141114 125141155 -37458775 - MLT1A1 LTR MaLR 0 365 325 2097 126 13 0 chrX 125141155 125141457 -37458473 + AluSq SINE Alu 1 306 -7 1177 172 40 41 chrX 125141457 125141737 -37458193 - MLT1A1 LTR MaLR -40 325 2 794 182 8 0 chrX 125141870 125142002 -37457928 - FLAM_A SINE Alu 0 133 1 184 324 29 0 chrX 125142119 125142187 -37457743 + L2 LINE L2 2691 2760 -554 1504 101 5 24 chrX 125142529 125142792 -37457138 - AluSg/x SINE Alu 0 337 79 349 280 133 18 chrX 125142895 125143113 -37456817 - L1 LINE L1 -2192 3954 3712 1660 240 134 19 chrX 125143122 125143651 -37456279 - MLT1G LTR MaLR 0 590 1 2097 102 25 0 chrX 125144054 125144349 -37455581 - AluSx SINE Alu 0 302 1 336 185 222 0 chrX 125144437 125144545 -37455385 - L1MB7 LINE L1 0 6184 6053 2047 149 0 13 chrX 125144545 125144854 -37455076 - AluSx SINE Alu -4 308 4 216 97 0 0 chrX 125145683 125145714 -37454216 + (TAAG)n Simple_repeat Simple_repeat 3 33 0 288 0 0 0 chrX 125146809 125146841 -37453089 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1383 167 69 43 chrX 125146844 125147120 -37452810 - AluJb SINE Alu -29 283 1 785 167 112 148 chrX 125147122 125147258 -37452672 - AluJo SINE Alu -5 297 158 267 31 0 0 chrX 125147258 125147290 -37452640 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 785 167 112 148 chrX 125147290 125147458 -37452472 - AluJo SINE Alu -144 158 4 24 32 0 0 chrX 125147766 125147797 -37452133 + AT_rich Low_complexity Low_complexity 1 31 0 2215 96 33 7 chrX 125148519 125148822 -37451108 - AluSx SINE Alu -1 311 1 209 259 0 141 chrX 125148983 125149068 -37450862 + MIR SINE MIR 78 150 -112 2202 102 10 10 chrX 125150402 125150705 -37449225 + AluSx SINE Alu 1 303 -9 563 226 32 74 chrX 125150762 125150802 -37449128 + MIR SINE MIR 81 121 -141 1861 118 16 77 chrX 125150802 125151125 -37448805 - AluSx SINE Alu -9 303 1 563 226 32 74 chrX 125151125 125151274 -37448656 + MIR SINE MIR 121 262 0 228 271 14 14 chrX 125151537 125151607 -37448323 + L2 LINE L2 3187 3256 -57 22 0 0 0 chrX 125152097 125152119 -37447811 + AT_rich Low_complexity Low_complexity 1 22 0 526 280 88 16 chrX 125154669 125154862 -37445068 + MIR SINE MIR 1 207 -55 192 40 0 0 chrX 125154862 125154887 -37445043 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 2014 126 18 0 chrX 125156115 125156401 -37443529 - AluSx SINE Alu -21 291 1 258 217 29 14 chrX 125156887 125156956 -37442974 + MIR SINE MIR 81 150 -112 24 0 0 0 chrX 125158954 125158978 -37440952 + AT_rich Low_complexity Low_complexity 1 24 0 2501 62 0 0 chrX 125159254 125159561 -37440369 - AluY SINE Alu -4 307 1 3120 174 35 36 chrX 125159838 125160483 -37439447 - L1MB4 LINE L1 -9 6171 5526 2398 92 0 0 chrX 125160483 125160788 -37439142 - AluSx SINE Alu -7 305 1 3120 174 35 36 chrX 125160788 125160832 -37439098 - L1MB4 LINE L1 -654 5526 5483 480 299 104 37 chrX 125160945 125161350 -37438580 + L1MC/D LINE L1 4407 4838 -1308 697 289 76 9 chrX 125161555 125161880 -37438050 + L1MC/D LINE L1 5311 5739 -2069 205 261 101 0 chrX 125161936 125162005 -37437925 - MIR SINE MIR -49 213 138 26 0 0 0 chrX 125162120 125162146 -37437784 + AT_rich Low_complexity Low_complexity 1 26 0 1567 152 46 43 chrX 125162436 125162738 -37437192 - AluJb SINE Alu -9 303 1 24 32 0 0 chrX 125163986 125164017 -37435913 + AT_rich Low_complexity Low_complexity 1 31 0 2572 43 0 0 chrX 125164123 125164426 -37435504 + AluY SINE Alu 1 303 -8 879 110 0 41 chrX 125164568 125164713 -37435217 - AluSg/x SINE Alu -18 292 154 2229 89 26 3 chrX 125165818 125166120 -37433810 - AluSx SINE Alu -1 311 3 332 324 50 14 chrX 125166163 125166302 -37433628 + MIR SINE MIR 9 152 -110 1413 244 78 31 chrX 125166557 125166711 -37433219 - L1M4 LINE L1 -1880 4266 4121 2006 129 0 0 chrX 125166711 125166990 -37432940 + AluSx SINE Alu 6 284 -28 1413 244 78 31 chrX 125166990 125167315 -37432615 - L1M4 LINE L1 -2025 4121 3751 1426 174 17 28 chrX 125167315 125167633 -37432297 - AluJo SINE Alu 0 315 1 1413 244 78 31 chrX 125167633 125167738 -37432192 - L1M4 LINE L1 -2395 3751 3652 2037 128 13 3 chrX 125167792 125168097 -37431833 - AluSx SINE Alu -4 308 1 1994 108 7 4 chrX 125168315 125168593 -37431337 + AluSx SINE Alu 4 282 -30 64 26 0 0 chrX 125168605 125168683 -37431247 + AT_rich Low_complexity Low_complexity 1 78 0 225 0 0 0 chrX 125169415 125169440 -37430490 + (T)n Simple_repeat Simple_repeat 1 25 0 299 139 0 0 chrX 125171153 125171196 -37428734 - 5S rRNA rRNA -78 43 1 392 242 125 17 chrX 125171222 125171342 -37428588 - MIR SINE MIR -6 256 124 2128 115 0 0 chrX 125172116 125172404 -37427526 - AluSx SINE Alu -13 299 12 21 57 0 0 chrX 125172423 125172458 -37427472 + AT_rich Low_complexity Low_complexity 1 35 0 243 0 0 0 chrX 125173815 125173842 -37426088 + (T)n Simple_repeat Simple_repeat 1 27 0 1572 182 21 0 chrX 125174956 125175236 -37424694 - AluSx SINE Alu -26 286 1 2008 143 3 22 chrX 125175421 125175735 -37424195 + AluSx SINE Alu 1 308 -4 233 304 49 49 chrX 125178466 125178568 -37421362 + MIR3 SINE MIR 15 116 -92 269 196 20 20 chrX 125179273 125179324 -37420606 + L2 LINE L2 3210 3260 -12 1417 183 38 4 chrX 125179679 125179942 -37419988 - AluJo SINE Alu -6 306 35 207 269 210 8 chrX 125180227 125180346 -37419584 - L2 LINE L2 -3 3310 3168 1116 147 0 0 chrX 125180363 125180552 -37419378 - AluSx SINE Alu 0 307 119 258 32 0 0 chrX 125180552 125180583 -37419347 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1031 83 0 0 chrX 125180583 125180716 -37419214 - AluSx SINE Alu -180 133 1 216 67 0 0 chrX 125181080 125181110 -37418820 + (TG)n Simple_repeat Simple_repeat 1 30 0 1462 198 3 21 chrX 125181110 125181393 -37418537 - AluJo SINE Alu -33 279 2 642 221 0 44 chrX 125181747 125181883 -37418047 - FLAM_A SINE Alu -2 131 2 749 287 75 19 chrX 125181908 125182267 -37417663 - L1ME2 LINE L1 -300 5864 5486 234 250 75 0 chrX 125182862 125182942 -37416988 + L1ME4a LINE L1 5329 5414 -2394 2190 111 0 0 chrX 125182948 125183245 -37416685 - AluSq SINE Alu -16 297 1 254 313 50 20 chrX 125184464 125184563 -37415367 + MIR SINE MIR 36 137 -71 427 294 68 36 chrX 125185939 125186191 -37413739 + L1ME4a LINE L1 5566 5825 -296 306 237 110 17 chrX 125186228 125186346 -37413584 + L1ME4a LINE L1 5987 6115 -6 2205 123 0 0 chrX 125186358 125186660 -37413270 + AluSx SINE Alu 1 302 -10 2486 62 0 3 chrX 125186805 125187110 -37412820 - AluY SINE Alu -7 304 1 824 136 8 0 chrX 125187171 125187296 -37412634 + FLAM_C SINE Alu 1 126 -17 21 0 0 0 chrX 125187304 125187325 -37412605 + AT_rich Low_complexity Low_complexity 1 21 0 1651 149 62 31 chrX 125187642 125187997 -37411933 - L1MA9 LINE L1 0 6312 5947 310 200 0 0 chrX 125187997 125188052 -37411878 - L1MA9 LINE L1 -624 5688 5634 2201 100 0 0 chrX 125188081 125188371 -37411559 + AluSg SINE Alu 3 292 -18 478 109 76 33 chrX 125188372 125188464 -37411466 - L1MA5A LINE L1 -12 6285 6190 500 261 74 5 chrX 125188464 125188679 -37411251 - L1ME LINE L1 -304 5817 5588 1734 138 38 0 chrX 125189390 125189680 -37410250 + AluSx SINE Alu 1 301 -11 819 154 15 0 chrX 125190235 125190365 -37409565 - AluJb SINE Alu -180 132 1 237 33 0 0 chrX 125190865 125190895 -37409035 + (TG)n Simple_repeat Simple_repeat 2 31 0 543 211 53 0 chrX 125191477 125191591 -37408339 - FLAM_A SINE Alu -13 120 1 644 237 60 39 chrX 125191893 125192010 -37407920 + L1ME2 LINE L1 5920 6033 -131 1758 125 57 7 chrX 125192010 125192289 -37407641 - AluSg SINE Alu -17 293 1 644 237 60 39 chrX 125192289 125192403 -37407527 + L1ME2 LINE L1 6033 6156 -8 1058 258 85 28 chrX 125192424 125192811 -37407119 + L1ME LINE L1 5410 5818 -344 212 288 125 12 chrX 125193048 125193128 -37406802 - MER5C DNA MER1_type -235 89 1 1943 128 44 0 chrX 125193178 125193474 -37406456 + AluSg SINE Alu 1 309 -1 349 291 129 38 chrX 125193662 125193872 -37406058 + MIR SINE MIR 28 256 -6 256 247 117 13 chrX 125193959 125194036 -37405894 + L2 LINE L2 3172 3256 -16 550 243 180 15 chrX 125194555 125194761 -37405169 - MIR SINE MIR -22 240 1 953 213 154 15 chrX 125195053 125195479 -37404451 - MLT1G3 LTR MaLR 0 590 1 2334 74 10 0 chrX 125196287 125196585 -37403345 - AluSp SINE Alu -12 301 1 2147 112 17 0 chrX 125196585 125196880 -37403050 - AluSg SINE Alu -10 300 1 221 356 138 31 chrX 125197180 125197469 -37402461 + L2 LINE L2 2559 2878 -436 321 102 169 0 chrX 125197488 125197547 -37402383 - MER116 DNA Mariner -5 75 7 2177 141 0 0 chrX 125197552 125197858 -37402072 + AluSx SINE Alu 3 308 -4 192 298 163 0 chrX 125198031 125198172 -37401758 + L2 LINE L2 3140 3303 -10 373 284 27 110 chrX 125198934 125199233 -37400697 + L2 LINE L2 2575 2848 -466 510 265 170 7 chrX 125199347 125199494 -37400436 + L2 LINE L2 3102 3272 0 300 287 13 121 chrX 125201060 125201217 -37398713 + L2 LINE L2 3115 3254 -18 2357 65 0 0 chrX 125202607 125202898 -37397032 - AluY SINE Alu -20 291 1 236 381 0 10 chrX 125203400 125203497 -37396433 - L2 LINE L2 -564 2750 2655 332 361 112 29 chrX 125203681 125204146 -37395784 + L2 LINE L2 2564 3061 -211 188 289 340 0 chrX 125204239 125204336 -37395594 + L2 LINE L2 3143 3272 0 2028 149 0 3 chrX 125204568 125204876 -37395054 + AluJo SINE Alu 1 307 -5 331 256 65 0 chrX 125204878 125204971 -37394959 - MER5A DNA MER1_type -80 98 9 197 267 150 0 chrX 125205185 125205245 -37394685 - L2 LINE L2 -56 3257 3189 353 273 86 41 chrX 125205301 125205509 -37394421 - MIR SINE MIR -33 229 16 22 111 0 0 chrX 125206324 125206423 -37393507 + AT_rich Low_complexity Low_complexity 1 99 0 246 305 57 38 chrX 125207916 125208021 -37391909 - L2 LINE L2 0 3313 3207 24 32 0 0 chrX 125208547 125208578 -37391352 + AT_rich Low_complexity Low_complexity 1 31 0 35 0 0 0 chrX 125209137 125209172 -37390758 + AT_rich Low_complexity Low_complexity 1 35 0 253 247 110 0 chrX 125210842 125210915 -37389015 - MIR SINE MIR -40 222 142 21 0 0 0 chrX 125210930 125210951 -37388979 + AT_rich Low_complexity Low_complexity 1 21 0 1561 151 19 39 chrX 125211007 125211319 -37388611 + MER1B DNA MER1_type 31 336 -3 341 260 0 26 chrX 125211320 125211397 -37388533 - MIR SINE MIR -160 102 28 210 282 99 0 chrX 125211844 125211915 -37388015 - L2 LINE L2 -10 3262 3185 41553 42 8 1 chrX 125212097 125218207 -37381723 - L1PA4 LINE L1 -3 6152 1 955 198 180 15 chrX 125218403 125218792 -37381138 - L1ME2 LINE L1 -10 6154 5702 497 51 152 0 chrX 125219284 125219363 -37380567 - L1MA8 LINE L1 -54 6237 6147 3830 241 63 26 chrX 125219365 125220128 -37379802 - L1 LINE L1 -3602 3504 2771 2271 98 7 0 chrX 125220128 125220425 -37379505 - AluSp SINE Alu -14 299 1 3830 241 63 26 chrX 125220425 125222232 -37377698 - L1 LINE L1 -4335 2771 1150 1663 152 31 31 chrX 125222232 125222554 -37377376 - L1 LINE L1 -6702 328 7 442 295 31 17 chrX 125222784 125222939 -37376991 - MIR SINE MIR -62 146 2 249 365 0 39 chrX 125222939 125223026 -37376904 + L2 LINE L2 1450 1532 -1782 622 229 18 24 chrX 125223072 125223242 -37376688 - L1MD3 LINE L1 -1211 6784 6616 2042 187 91 55 chrX 125223264 125223483 -37376447 - L1MC4a LINE L1 -1535 6273 6063 2333 93 0 26 chrX 125223483 125223796 -37376134 - AluSq SINE Alu -8 305 1 2042 187 91 55 chrX 125223796 125223950 -37375980 - L1MC4a LINE L1 -1745 6063 5916 814 168 0 0 chrX 125223950 125224081 -37375849 - FLAM_C SINE Alu -2 131 1 2042 187 91 55 chrX 125224081 125224397 -37375533 - L1MC4a LINE L1 -1892 5916 5558 1092 102 0 0 chrX 125224397 125224534 -37375396 - AluSg SINE Alu -173 137 1 939 183 0 17 chrX 125224534 125224714 -37375216 - AluJb SINE Alu 0 312 136 679 289 71 32 chrX 125224724 125225260 -37374670 - L1MC4a LINE L1 -860 5286 4730 747 186 0 0 chrX 125225398 125225516 -37374414 + FLAM_C SINE Alu 1 118 -15 319 279 95 9 chrX 125225623 125225845 -37374085 - L1MC4a LINE L1 -1623 4523 4283 323 277 10 10 chrX 125225848 125225949 -37373981 + L1ME2 LINE L1 4909 5009 -1137 253 139 23 0 chrX 125225965 125226008 -37373922 - LTR58 LTR ERV1 -4 675 632 2047 112 10 3 chrX 125226012 125226308 -37373622 + AluSx SINE Alu 1 298 -14 2745 182 79 10 chrX 125226311 125226916 -37373014 - LTR58 LTR ERV1 -32 647 1 2698 187 68 45 chrX 125226917 125227057 -37372873 + L1ME2 LINE L1 5006 5141 -1023 2107 127 3 7 chrX 125227057 125227365 -37372565 + AluSx SINE Alu 1 307 -5 2698 187 68 45 chrX 125227365 125227580 -37372350 + L1ME2 LINE L1 5141 5350 -814 2309 98 0 10 chrX 125227580 125227885 -37372045 + AluSx SINE Alu 1 302 -10 2698 187 68 45 chrX 125227885 125228538 -37371392 + L1ME2 LINE L1 5350 6051 -113 371 258 59 54 chrX 125228639 125228860 -37371070 + L1MC4 LINE L1 7821 8042 0 232 192 19 19 chrX 125228878 125228930 -37371000 + GA-rich Low_complexity Low_complexity 1 52 0 1928 102 82 14 chrX 125229207 125229560 -37370370 + L1MA9 LINE L1 5808 6184 -128 2000 104 23 7 chrX 125229560 125229867 -37370063 + LTR9 LTR ERV1 1 312 -300 1079 199 179 41 chrX 125230166 125230557 -37369373 + L1MB8 LINE L1 5719 6163 -15 2281 103 7 0 chrX 125230574 125230865 -37369065 + AluSx SINE Alu 1 293 -19 235 238 0 0 chrX 125230874 125230937 -37368993 + L1M4 LINE L1 5207 5269 -877 689 161 102 7 chrX 125230938 125231075 -37368855 + MSTB LTR MaLR 1 150 -276 2026 126 7 0 chrX 125231219 125231521 -37368409 + AluSx SINE Alu 2 305 -7 2214 110 13 10 chrX 125232469 125232642 -37367288 - AluSx SINE Alu -1 311 135 2322 98 3 0 chrX 125232642 125232939 -37366991 - AluSx SINE Alu -14 298 1 2214 110 13 10 chrX 125232939 125233075 -37366855 - AluSx SINE Alu -177 135 1 404 249 69 26 chrX 125233303 125233492 -37366438 - L1MC5 LINE L1 -50 7911 7715 939 118 0 15 chrX 125233493 125233628 -37366302 - AluJb SINE Alu -179 133 1 233 130 43 0 chrX 125233636 125233682 -37366248 + CT-rich Low_complexity Low_complexity 3 50 0 1667 90 0 5 chrX 125233682 125233894 -37366036 - AluSp SINE Alu -102 211 1 2613 42 0 7 chrX 125234001 125234311 -37365619 + AluY SINE Alu 1 308 -3 2638 30 0 0 chrX 125234486 125234782 -37365148 + AluY SINE Alu 7 302 -9 726 202 67 3 chrX 125234816 125234973 -37364957 + MER5A DNA MER1_type 2 189 0 421 53 0 0 chrX 125235556 125235613 -37364317 - Alu SINE Alu -256 57 1 911 228 0 0 chrX 125235698 125235865 -37364065 + FAM SINE Alu 1 46 -3 2196 110 0 16 chrX 125236730 125237038 -37362892 + AluJb SINE Alu 3 305 -7 251 194 15 30 chrX 125237142 125237209 -37362721 + MIR SINE MIR 157 222 -40 2342 53 0 3 chrX 125237695 125238008 -37361922 - AluY SINE Alu 0 312 1 413 283 158 11 chrX 125238021 125238205 -37361725 - MIR SINE MIR -46 216 6 199 353 35 24 chrX 125238233 125238318 -37361612 - MIR SINE MIR -68 140 62 251 315 56 11 chrX 125238597 125238686 -37361244 + L2 LINE L2 3168 3260 -12 213 154 0 0 chrX 125238700 125238739 -37361191 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 1846 82 131 0 chrX 125238830 125239098 -37360832 - AluSp SINE Alu 0 303 1 1053 175 12 0 chrX 125239101 125239272 -37360658 - AluSg/x SINE Alu -6 304 132 2453 75 3 0 chrX 125239272 125239577 -37360353 - AluSc SINE Alu -3 306 1 2235 102 3 0 chrX 125239578 125239872 -37360058 - AluSg SINE Alu -15 295 1 2193 86 0 7 chrX 125239883 125240230 -37359700 - AluY SINE Alu 0 352 8 1964 106 4 0 chrX 125240231 125240495 -37359435 - AluSx SINE Alu -47 265 1 2351 97 0 0 chrX 125242540 125242848 -37357082 - AluSg1 SINE Alu 0 309 2 2379 131 225 36 chrX 125242931 125243464 -37356466 - MER51A LTR ERV1 0 634 1 223 331 94 87 chrX 125243773 125244072 -37355858 + L2 LINE L2 2896 3196 -76 410 214 176 0 chrX 125244174 125244305 -37355625 - MER2 DNA MER2_type 0 345 192 2367 92 0 0 chrX 125244305 125244600 -37355330 - AluSx SINE Alu -17 295 1 1846 95 82 51 chrX 125244609 125244903 -37355027 - AluSp SINE Alu -10 303 1 672 164 30 22 chrX 125244908 125245042 -37354888 - FLAM_C SINE Alu -8 135 1 2433 81 3 7 chrX 125245088 125245396 -37354534 + AluSg SINE Alu 1 307 -3 349 190 38 0 chrX 125245396 125245554 -37354376 + (TATATG)n Simple_repeat Simple_repeat 3 166 0 31 68 0 0 chrX 125245617 125245676 -37354254 + AT_rich Low_complexity Low_complexity 1 59 0 1809 183 60 60 chrX 125245688 125246168 -37353762 - L1ME3 LINE L1 -71 6091 5612 207 390 49 0 chrX 125246330 125246412 -37353518 - L3 LINE CR1 -1426 151 66 404 164 0 0 chrX 125246976 125247037 -37352893 + AluS SINE Alu 1 61 -257 1346 158 33 92 chrX 125247069 125247405 -37352525 - MLT1A2 LTR MaLR 0 374 59 1397 144 19 0 chrX 125247431 125247639 -37352291 + AluJb SINE Alu 75 286 -26 1671 95 0 13 chrX 125248069 125248300 -37351630 - AluSg/x SINE Alu 0 310 83 21 0 0 0 chrX 125248700 125248721 -37351209 + AT_rich Low_complexity Low_complexity 1 21 0 337 294 123 59 chrX 125249380 125249431 -37350499 - MIR3 SINE MIR -5 203 157 2420 98 3 0 chrX 125249431 125249738 -37350192 - AluSp SINE Alu -5 308 1 337 294 123 59 chrX 125249738 125249856 -37350074 - MIR3 SINE MIR -51 157 23 198 128 0 0 chrX 125249860 125249899 -37350031 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 798 131 55 0 chrX 125249913 125250058 -37349872 - L1MB2 LINE L1 -7 6164 6012 1071 160 0 0 chrX 125250058 125250227 -37349703 + FRAM SINE Alu 3 171 -5 531 92 46 0 chrX 125250233 125250320 -37349610 - L1MB3 LINE L1 -161 6022 5932 1131 54 20 7 chrX 125250337 125250486 -37349444 - BC200 scRNA scRNA -49 151 1 229 283 24 102 chrX 125250678 125250844 -37349086 + L2 LINE L2 2947 3099 -173 294 29 0 0 chrX 125250850 125250885 -37349045 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1984 90 14 31 chrX 125250887 125251176 -37348754 - AluSx SINE Alu -28 284 1 395 318 99 79 chrX 125251347 125251946 -37347984 + L2 LINE L2 2668 3267 -5 218 179 0 0 chrX 125252067 125252106 -37347824 + (TACTG)n Simple_repeat Simple_repeat 1 39 0 364 282 78 0 chrX 125252134 125252237 -37347693 + MER5A DNA MER1_type 79 189 0 235 222 0 0 chrX 125252294 125252339 -37347591 + MIR SINE MIR 191 235 -27 633 325 119 6 chrX 125252472 125252783 -37347147 + L2 LINE L2 2206 2551 -763 349 314 58 8 chrX 125253059 125253180 -37346750 + L2 LINE L2 3142 3268 -4 395 215 76 97 chrX 125254032 125254320 -37345610 + L1ME4a LINE L1 5834 6115 -6 2206 103 3 13 chrX 125255264 125255575 -37344355 - AluSx SINE Alu -4 308 1 2612 52 3 0 chrX 125256832 125257140 -37342790 + AluY SINE Alu 1 309 -2 229 282 115 0 chrX 125257200 125257278 -37342652 + MIR SINE MIR 121 207 -55 2521 54 3 0 chrX 125257440 125257735 -37342195 + AluSp SINE Alu 1 296 -17 1100 156 0 0 chrX 125257763 125257930 -37342000 + AluJo SINE Alu 124 290 -22 21 36 0 0 chrX 125257942 125257970 -37341960 + AT_rich Low_complexity Low_complexity 1 28 0 630 253 53 0 chrX 125258093 125258243 -37341687 - MIR3 SINE MIR -2 206 49 405 247 0 0 chrX 125258393 125258470 -37341460 - MER2 DNA MER2_type -1 344 268 241 29 59 0 chrX 125258540 125258574 -37341356 - MER2 DNA MER2_type -134 211 176 267 122 20 0 chrX 125258630 125258679 -37341251 - MER2 DNA MER2_type -170 175 126 1329 163 5 0 chrX 125258682 125258891 -37341039 + AluJb SINE Alu 85 294 -18 1360 139 170 19 chrX 125258931 125259190 -37340740 - AluSx SINE Alu -14 298 1 933 104 7 7 chrX 125259190 125259325 -37340605 - AluSq/x SINE Alu -177 135 1 313 225 113 0 chrX 125259332 125259412 -37340518 - MER2 DNA MER2_type -256 89 1 2098 113 7 0 chrX 125259435 125259737 -37340193 + AluSx SINE Alu 2 305 -7 2208 110 13 10 chrX 125260685 125260858 -37339072 - AluSx SINE Alu -1 311 135 2322 98 3 0 chrX 125260858 125261155 -37338775 - AluSx SINE Alu -14 298 1 2208 110 13 10 chrX 125261155 125261291 -37338639 - AluSx SINE Alu -177 135 1 478 245 66 31 chrX 125261512 125261708 -37338222 - L1MC5 LINE L1 -44 7917 7715 939 118 0 15 chrX 125261709 125261844 -37338086 - AluJb SINE Alu -179 133 1 233 130 43 0 chrX 125261852 125261898 -37338032 + CT-rich Low_complexity Low_complexity 3 50 0 1671 90 0 5 chrX 125261898 125262110 -37337820 - AluSp SINE Alu -102 211 1 2634 42 0 7 chrX 125262217 125262527 -37337403 + AluY SINE Alu 1 308 -3 2665 30 0 0 chrX 125262702 125262998 -37336932 + AluY SINE Alu 7 302 -9 724 202 67 3 chrX 125263032 125263189 -37336741 + MER5A DNA MER1_type 2 189 0 446 49 82 0 chrX 125263767 125263828 -37336102 - AluY SINE Alu -251 67 2 882 228 0 0 chrX 125263914 125264081 -37335849 + FAM SINE Alu 1 46 -3 2196 110 0 16 chrX 125264946 125265254 -37334676 + AluJb SINE Alu 3 305 -7 246 194 15 30 chrX 125265358 125265425 -37334505 + MIR SINE MIR 157 222 -40 2369 53 0 3 chrX 125265911 125266224 -37333706 - AluY SINE Alu 0 312 1 405 283 158 11 chrX 125266237 125266421 -37333509 - MIR SINE MIR -46 216 6 195 361 39 3 chrX 125266449 125266534 -37333396 - MIR SINE MIR -68 140 62 246 315 56 11 chrX 125266813 125266902 -37333028 + L2 LINE L2 3168 3260 -12 213 154 0 0 chrX 125266916 125266955 -37332975 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 1968 82 131 0 chrX 125267046 125267314 -37332616 - AluSp SINE Alu 0 303 1 1040 175 12 0 chrX 125267317 125267488 -37332442 - AluSg/x SINE Alu -6 306 134 2462 75 3 0 chrX 125267488 125267793 -37332137 - AluSc SINE Alu -3 306 1 2240 102 3 0 chrX 125267794 125268088 -37331842 - AluSg SINE Alu -15 295 1 2203 86 0 7 chrX 125268099 125268446 -37331484 - AluY SINE Alu 0 352 8 1973 106 4 0 chrX 125268447 125268711 -37331219 - AluSx SINE Alu -47 265 1 2355 97 0 0 chrX 125270756 125271064 -37328866 - AluSg1 SINE Alu 0 309 2 2632 128 225 36 chrX 125271147 125271680 -37328250 - MER51A LTR ERV1 0 634 1 205 331 94 87 chrX 125271989 125272288 -37327642 + L2 LINE L2 2896 3196 -76 1673 153 68 56 chrX 125272390 125272521 -37327409 - MER2 DNA MER2_type 0 344 216 2341 95 0 0 chrX 125272521 125272816 -37327114 - AluSx SINE Alu -17 295 1 2379 63 13 13 chrX 125272825 125273128 -37326802 - AluSp SINE Alu -10 303 1 1673 153 68 56 chrX 125273128 125273326 -37326604 - MER2 DNA MER2_type -135 209 1 28 29 0 0 chrX 125273571 125273606 -37326324 + AT_rich Low_complexity Low_complexity 1 35 0 1841 158 0 3 chrX 125273711 125274003 -37325927 - AluJb SINE Alu -21 291 1 645 152 161 0 chrX 125274347 125274459 -37325471 + AluJb SINE Alu 1 130 -182 296 370 75 23 chrX 125274860 125275033 -37324897 + MER5A DNA MER1_type 7 188 -1 2769 134 17 47 chrX 125275141 125275612 -37324318 - MSTB2 LTR MaLR 0 457 1 211 267 50 17 chrX 125275949 125276009 -37323921 + MIR SINE MIR 49 110 -152 2418 73 0 0 chrX 125276584 125276873 -37323057 + AluY SINE Alu 9 297 -14 642 223 48 53 chrX 125277153 125277341 -37322589 + L1MC/D LINE L1 5434 5620 -2188 21 0 0 0 chrX 125277418 125277439 -37322491 + AT_rich Low_complexity Low_complexity 1 21 0 2100 186 26 37 chrX 125277551 125278014 -37321916 - L1ME1 LINE L1 -8 6158 5701 2062 162 61 14 chrX 125278014 125278439 -37321491 - L1ME1 LINE L1 -1105 5041 4597 3074 166 82 61 chrX 125278455 125278806 -37321124 - L1MB3 LINE L1 -7 6176 5834 2159 114 0 10 chrX 125278806 125279104 -37320826 - AluSx SINE Alu -17 295 1 3074 166 82 61 chrX 125279104 125279332 -37320598 - L1MB3 LINE L1 -349 5834 5612 2064 126 7 13 chrX 125279332 125279634 -37320296 - AluSx SINE Alu -12 300 1 3074 166 82 61 chrX 125279634 125279740 -37320190 - L1MB3 LINE L1 -571 5612 5510 501 47 0 0 chrX 125279740 125279804 -37320126 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 3074 166 82 61 chrX 125279804 125279900 -37320030 - L1MB3 LINE L1 -673 5510 5377 1461 117 131 50 chrX 125280001 125280284 -37319646 + AluJo SINE Alu 1 306 -6 242 218 55 0 chrX 125280571 125280626 -37319304 + CT-rich Low_complexity Low_complexity 3 60 0 816 167 0 8 chrX 125280626 125280752 -37319178 - FRAM SINE Alu -31 145 21 234 304 49 49 chrX 125332898 125333000 -37266930 + MIR3 SINE MIR 15 116 -92 268 196 20 20 chrX 125333705 125333756 -37266174 + L2 LINE L2 3210 3260 -12 1435 183 38 4 chrX 125334111 125334374 -37265556 - AluJo SINE Alu -6 306 35 201 269 210 8 chrX 125334659 125334778 -37265152 - L2 LINE L2 -3 3310 3168 1133 147 0 0 chrX 125334795 125334984 -37264946 - AluSx SINE Alu 0 307 119 258 32 0 0 chrX 125334984 125335015 -37264915 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1046 83 0 0 chrX 125335015 125335148 -37264782 - AluSx SINE Alu -179 133 1 216 67 0 0 chrX 125335512 125335542 -37264388 + (TG)n Simple_repeat Simple_repeat 1 30 0 1492 198 3 21 chrX 125335542 125335825 -37264105 - AluJo SINE Alu -33 279 2 653 221 0 44 chrX 125336179 125336315 -37263615 - FLAM_A SINE Alu -2 131 2 722 287 75 19 chrX 125336340 125336699 -37263231 - L1ME2 LINE L1 -300 5864 5486 228 244 77 0 chrX 125337296 125337374 -37262556 + L1ME4a LINE L1 5331 5414 -2394 2223 111 0 0 chrX 125337380 125337677 -37262253 - AluSq SINE Alu -16 297 1 258 323 50 20 chrX 125338896 125338995 -37260935 + MIR SINE MIR 36 137 -71 399 286 68 36 chrX 125340371 125340623 -37259307 + L1ME4a LINE L1 5566 5825 -296 306 237 110 17 chrX 125340660 125340778 -37259152 + L1ME4a LINE L1 5987 6115 -6 2234 123 0 0 chrX 125340790 125341092 -37258838 + AluSx SINE Alu 1 302 -10 2468 63 7 3 chrX 125341348 125341651 -37258279 - AluY SINE Alu -7 304 1 840 136 8 0 chrX 125341712 125341837 -37258093 + FLAM_C SINE Alu 1 126 -17 21 0 0 0 chrX 125341845 125341866 -37258064 + AT_rich Low_complexity Low_complexity 1 21 0 1650 149 62 31 chrX 125342183 125342538 -37257392 - L1MA9 LINE L1 0 6312 5947 309 200 0 0 chrX 125342538 125342593 -37257337 - L1MA9 LINE L1 -624 5688 5634 2235 100 0 0 chrX 125342622 125342912 -37257018 + AluSg SINE Alu 3 292 -18 477 109 76 33 chrX 125342913 125343005 -37256925 - L1MA5A LINE L1 -12 6285 6190 479 246 84 14 chrX 125343005 125343220 -37256710 - L1ME LINE L1 -304 5817 5588 1768 138 38 0 chrX 125343931 125344221 -37255709 + AluSx SINE Alu 1 301 -11 832 154 15 0 chrX 125344776 125344906 -37255024 - AluJb SINE Alu -180 132 1 237 33 0 0 chrX 125345406 125345436 -37254494 + (TG)n Simple_repeat Simple_repeat 2 31 0 556 211 53 0 chrX 125346018 125346132 -37253798 - FLAM_A SINE Alu -13 120 1 629 237 60 39 chrX 125346434 125346551 -37253379 + L1ME2 LINE L1 5920 6033 -131 1787 125 57 7 chrX 125346551 125346830 -37253100 - AluSg SINE Alu -17 293 1 629 237 60 39 chrX 125346830 125346944 -37252986 + L1ME2 LINE L1 6033 6156 -8 1024 258 85 28 chrX 125346965 125347352 -37252578 + L1ME LINE L1 5410 5818 -344 216 288 125 12 chrX 125347589 125347669 -37252261 - MER5C DNA MER1_type -235 89 1 1972 128 44 0 chrX 125347719 125348015 -37251915 + AluSg SINE Alu 1 309 -1 344 291 129 38 chrX 125348203 125348413 -37251517 + MIR SINE MIR 28 256 -6 256 247 117 13 chrX 125348500 125348577 -37251353 + L2 LINE L2 3172 3256 -16 542 243 180 15 chrX 125349096 125349302 -37250628 - MIR SINE MIR -22 240 1 966 213 154 15 chrX 125349594 125350020 -37249910 - MLT1G3 LTR MaLR 0 590 1 2292 77 14 0 chrX 125350828 125351125 -37248805 - AluSp SINE Alu -12 301 1 1119 79 0 0 chrX 125351253 125351392 -37248538 + AluSg/x SINE Alu 170 308 -4 196 298 163 0 chrX 125351565 125351706 -37248224 + L2 LINE L2 3140 3303 -10 383 284 27 110 chrX 125352468 125352767 -37247163 + L2 LINE L2 2575 2848 -466 513 265 170 7 chrX 125352881 125353028 -37246902 + L2 LINE L2 3102 3272 0 300 287 13 121 chrX 125354594 125354751 -37245179 + L2 LINE L2 3115 3254 -18 2398 65 0 0 chrX 125356141 125356432 -37243498 - AluY SINE Alu -20 291 1 238 381 0 10 chrX 125356934 125357031 -37242899 - L2 LINE L2 -564 2750 2655 339 357 115 32 chrX 125357215 125357680 -37242250 + L2 LINE L2 2564 3061 -211 180 289 340 0 chrX 125357773 125357870 -37242060 + L2 LINE L2 3143 3272 0 225 0 0 0 chrX 125358135 125358160 -37241770 + (A)n Simple_repeat Simple_repeat 1 25 0 339 256 65 0 chrX 125358162 125358255 -37241675 - MER5A DNA MER1_type -80 98 9 195 250 150 0 chrX 125358469 125358529 -37241401 - L2 LINE L2 -56 3257 3189 352 273 86 41 chrX 125358585 125358793 -37241137 - MIR SINE MIR -33 229 16 22 111 0 0 chrX 125359608 125359707 -37240223 + AT_rich Low_complexity Low_complexity 1 99 0 233 305 57 38 chrX 125361200 125361305 -37238625 - L2 LINE L2 0 3313 3207 23 33 0 0 chrX 125361831 125361861 -37238069 + AT_rich Low_complexity Low_complexity 1 30 0 35 0 0 0 chrX 125362420 125362455 -37237475 + AT_rich Low_complexity Low_complexity 1 35 0 247 200 20 0 chrX 125364125 125364175 -37235755 - MIR SINE MIR -40 222 172 21 0 0 0 chrX 125364213 125364234 -37235696 + AT_rich Low_complexity Low_complexity 1 21 0 1682 151 19 39 chrX 125364290 125364602 -37235328 + MER1B DNA MER1_type 31 336 -3 339 260 0 26 chrX 125364603 125364680 -37235250 - MIR SINE MIR -160 102 28 209 282 99 0 chrX 125365127 125365198 -37234732 - L2 LINE L2 -10 3262 3185 44405 42 8 1 chrX 125365377 125371489 -37228441 - L1PA4 LINE L1 0 6155 1 230 224 30 15 chrX 125371601 125371668 -37228262 - L1MC4 LINE L1 -156 7886 7819 1125 198 180 15 chrX 125371685 125372074 -37227856 - L1ME2 LINE L1 -10 6154 5702 537 94 162 39 chrX 125372502 125372645 -37227285 - L1MA8 LINE L1 -6 6294 6147 4479 239 64 27 chrX 125372647 125373410 -37226520 - L1 LINE L1 -3602 3504 2770 2273 98 7 0 chrX 125373410 125373707 -37226223 - AluSp SINE Alu -14 299 1 4479 239 64 27 chrX 125373707 125375515 -37224415 - L1 LINE L1 -4336 2770 1150 1806 158 30 30 chrX 125375515 125375843 -37224087 - L1 LINE L1 -6702 328 1 433 295 31 17 chrX 125376067 125376222 -37223708 - MIR SINE MIR -62 146 2 242 365 0 39 chrX 125376222 125376309 -37223621 + L2 LINE L2 1450 1532 -1782 692 229 18 24 chrX 125376355 125376525 -37223405 - L1MD3 LINE L1 -1211 6784 6616 2346 185 91 55 chrX 125376547 125376766 -37223164 - L1MC4a LINE L1 -1535 6273 6063 2334 93 0 26 chrX 125376766 125377079 -37222851 - AluSq SINE Alu -8 305 1 2346 185 91 55 chrX 125377079 125377233 -37222697 - L1MC4a LINE L1 -1745 6063 5916 868 168 0 0 chrX 125377233 125377364 -37222566 - FLAM_C SINE Alu -2 131 1 2346 185 91 55 chrX 125377364 125377680 -37222250 - L1MC4a LINE L1 -1892 5916 5558 1088 102 0 0 chrX 125377680 125377817 -37222113 - AluSg SINE Alu -173 137 1 930 183 0 17 chrX 125377817 125377997 -37221933 - AluJb SINE Alu 0 312 136 868 262 93 93 chrX 125378007 125378681 -37221249 - L1MC4a LINE L1 -860 5286 4610 792 186 0 0 chrX 125378681 125378799 -37221131 + FLAM_C SINE Alu 1 118 -15 868 262 93 93 chrX 125378799 125379130 -37220800 - L1MC4a LINE L1 -1535 4611 4281 363 277 10 10 chrX 125379131 125379232 -37220698 + L1ME2 LINE L1 4909 5009 -1137 275 139 23 0 chrX 125379248 125379291 -37220639 - LTR58 LTR ERV1 -4 675 632 2060 112 10 3 chrX 125379295 125379591 -37220339 + AluSx SINE Alu 1 298 -14 652 213 13 13 chrX 125379594 125379749 -37220181 - LTR58 LTR ERV1 -32 647 493 2255 192 98 8 chrX 125379860 125380349 -37219581 - LTR58 LTR ERV1 -146 533 1 3034 185 69 46 chrX 125380350 125380490 -37219440 + L1ME2 LINE L1 5006 5141 -1023 2107 127 3 7 chrX 125380490 125380798 -37219132 + AluSx SINE Alu 1 307 -5 3034 185 69 46 chrX 125380798 125381013 -37218917 + L1ME2 LINE L1 5141 5350 -814 2310 98 0 10 chrX 125381013 125381318 -37218612 + AluSx SINE Alu 1 302 -10 3034 185 69 46 chrX 125381318 125381971 -37217959 + L1ME2 LINE L1 5350 6051 -113 262 258 59 54 chrX 125382072 125382293 -37217637 + L1MC4 LINE L1 7821 8042 0 232 192 19 19 chrX 125382311 125382363 -37217567 + GA-rich Low_complexity Low_complexity 1 52 0 2109 102 82 14 chrX 125382640 125382993 -37216937 + L1MA9 LINE L1 5808 6184 -128 2152 104 23 7 chrX 125382993 125383300 -37216630 + LTR9 LTR ERV1 1 312 -300 1244 195 173 52 chrX 125383599 125384004 -37215926 + L1MB8 LINE L1 5719 6172 -6 2279 103 7 0 chrX 125384007 125384298 -37215632 + AluSx SINE Alu 1 293 -19 6246 134 21 47 chrX 125384307 125384371 -37215559 + L1MC1 LINE L1 5207 5271 -1062 2126 169 93 15 chrX 125384371 125384768 -37215162 + MSTA LTR MaLR 1 428 0 6246 134 21 47 chrX 125384768 125384783 -37215147 + L1MC1 LINE L1 5271 5285 -1048 1852 144 63 0 chrX 125384783 125385068 -37214862 - AluSx SINE Alu -9 303 1 6246 134 21 47 chrX 125385068 125386082 -37213848 + L1MC1 LINE L1 5285 6259 -74 2382 93 0 0 chrX 125386082 125386382 -37213548 - AluSq SINE Alu -9 304 5 6246 134 21 47 chrX 125386382 125386447 -37213483 + L1MC1 LINE L1 6259 6324 -9 204 40 0 0 chrX 125386465 125386490 -37213440 + (TG)n Simple_repeat Simple_repeat 2 26 0 1810 148 39 0 chrX 125387160 125387444 -37212486 - AluJb SINE Alu -17 295 1 1852 128 7 36 chrX 125387938 125388101 -37211829 + AluJo SINE Alu 11 162 -150 2629 166 99 114 chrX 125388101 125388898 -37211032 + LTR1 LTR ERV1 1 785 0 1852 128 7 36 chrX 125388898 125389040 -37210890 + AluJo SINE Alu 162 307 -5 194 0 39 0 chrX 125389055 125389081 -37210849 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6169 68 26 41 chrX 125389081 125390026 -37209904 - SVA Other Other -23 1363 433 2509 79 39 104 chrX 125390043 125390560 -37209370 - SVA Other Other -520 866 384 1925 134 3 10 chrX 125390580 125390870 -37209060 - AluSx SINE Alu -24 288 1 254 266 4 17 chrX 125391287 125391379 -37208551 - L1ME LINE L1 -5966 430 39 2317 106 0 0 chrX 125391503 125391804 -37208126 + AluSx SINE Alu 1 301 -11 879 211 10 31 chrX 125391866 125392060 -37207870 + MLT1H LTR MaLR 359 548 -1 23 33 0 0 chrX 125392686 125392716 -37207214 + AT_rich Low_complexity Low_complexity 1 30 0 2093 108 45 0 chrX 125392720 125393007 -37206923 - AluSx SINE Alu -12 300 1 27 49 0 0 chrX 125393080 125393121 -37206809 + AT_rich Low_complexity Low_complexity 1 41 0 1394 206 96 11 chrX 125393184 125393466 -37206464 - AluJo SINE Alu -6 306 1 2057 139 0 3 chrX 125393909 125394275 -37205655 - AluSx SINE Alu 0 365 1 366 181 12 36 chrX 125394616 125394699 -37205231 + U13 snRNA snRNA 22 102 -2 876 206 147 4 chrX 125395135 125395258 -37204672 + L1MD3 LINE L1 7711 7815 -180 2357 78 0 0 chrX 125395258 125395707 -37204223 + AluSx SINE Alu 1 449 0 876 206 147 4 chrX 125395707 125395820 -37204110 + L1MD3 LINE L1 7815 7982 -13 547 252 0 0 chrX 125396357 125396484 -37203446 + L1 LINE L1 5127 5253 -893 583 121 250 0 chrX 125396484 125396600 -37203330 + MLT1A1 LTR MaLR 1 145 -220 803 206 0 0 chrX 125396755 125396886 -37203044 - FLAM_A SINE Alu -1 132 2 8990 163 15 13 chrX 125397073 125397764 -37202166 - L1PA14 LINE L1 0 6161 5473 8348 53 19 4 chrX 125397764 125398756 -37201174 + LTR13 LTR ERVK 1 1007 0 8990 163 15 13 chrX 125398756 125400418 -37199512 - L1PA14 LINE L1 -688 5473 3811 2407 91 112 0 chrX 125400418 125400757 -37199173 - MER51B LTR ERV1 0 377 1 2535 104 6 3 chrX 125400759 125401104 -37198826 - MER51B-int LTR ERV1 -1 7815 7470 641 201 22 22 chrX 125401104 125401243 -37198687 - LTR54B LTR ERV1 -357 141 3 8450 121 25 3 chrX 125401243 125402902 -37197028 - MER51B-int LTR ERV1 -389 7148 5407 2227 91 5 8 chrX 125402879 125403282 -37196648 - MER51B-int LTR ERV1 -2555 2662 2217 * 1879 162 61 12 chrX 125403270 125403727 -37196203 - MER51B-int LTR ERV1 -2774 3172 1516 * 14996 116 115 75 chrX 125403761 125406851 -37193079 - MER51B-int LTR ERV1 -4580 3236 38 1362 222 138 29 chrX 125406873 125407351 -37192579 + LTR10B LTR ERV1 13 542 -5 311 130 0 0 chrX 125407364 125407410 -37192520 - MER51B-int LTR ERV1 -7767 49 4 2220 113 119 0 chrX 125407426 125407763 -37192167 - MER51B LTR ERV1 0 377 1 2005 148 45 0 chrX 125407765 125408097 -37191833 - L1P LINE L1 -2334 3812 3466 635 160 84 179 chrX 125408100 125408362 -37191568 + MER21B LTR ERV1 1 237 -626 6510 57 14 0 chrX 125408462 125409397 -37190533 + L1PA7 LINE L1 5127 6071 -83 868 224 61 0 chrX 125409397 125409562 -37190368 + AluJo SINE Alu 85 259 -53 1885 153 201 54 chrX 125409564 125410042 -37189888 + LTR10A LTR ERV1 1 548 -61 249 169 46 15 chrX 125410085 125410150 -37189780 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 454 287 24 18 chrX 125410154 125410318 -37189612 + L1ME4a LINE L1 5663 5827 -294 189 0 0 0 chrX 125410380 125410401 -37189529 + (TGGGGG)n Simple_repeat Simple_repeat 6 26 0 466 196 51 42 chrX 125410409 125410558 -37189372 + L1ME4a LINE L1 1197 6110 -11 316 250 0 0 chrX 125411856 125411924 -37188006 - L2 LINE L2 0 3313 3246 3920 141 62 34 chrX 125411928 125412635 -37187295 - LTR8A LTR ERV1 0 727 1 735 269 28 0 chrX 125412635 125412817 -37187113 - HUERS-P1 LTR ERV1 0 6263 6077 1492 130 142 55 chrX 125412963 125413293 -37186637 - LTR49-int LTR ERV1 -57 6274 5916 4604 134 40 34 chrX 125413316 125413521 -37186409 - LTR49-int LTR ERV1 -541 5790 5588 2027 130 7 13 chrX 125413521 125413820 -37186110 - AluSx SINE Alu -7 305 9 4604 134 40 34 chrX 125413820 125414448 -37185482 - LTR49-int LTR ERV1 -743 5588 4952 2803 185 36 74 chrX 125414444 125414474 -37185456 - LTR49-int LTR ERV1 -1571 4692 4662 * 1923 138 34 10 chrX 125414474 125414772 -37185158 + AluSq SINE Alu 1 305 -8 2803 185 36 74 chrX 125414772 125415128 -37184802 - LTR49-int LTR ERV1 -1601 4662 4294 1929 161 7 10 chrX 125415128 125415427 -37184503 - AluSx SINE Alu -14 298 1 2803 185 36 74 chrX 125415427 125415598 -37184332 - LTR49-int LTR ERV1 -1969 4294 4164 2352 103 3 0 chrX 125415598 125415910 -37184020 - AluSp SINE Alu 0 313 1 2803 185 36 74 chrX 125415910 125416052 -37183878 - LTR49-int LTR ERV1 -2099 4164 4018 1158 197 5 0 chrX 125416052 125416265 -37183665 + AluJb SINE Alu 92 305 -7 243 178 22 0 chrX 125416275 125416320 -37183610 - MER34C LTR ERV1 -366 219 174 1228 145 5 11 chrX 125416322 125416508 -37183422 - LTR49-int LTR ERV1 -4129 3408 3224 3468 156 39 22 chrX 125416519 125417209 -37182721 + LTR49-int LTR ERV1 1412 2286 -2594 738 281 57 48 chrX 125417204 125417538 -37182392 + LTR49-int LTR ERV1 2081 3696 -3722 * 3157 71 5 15 chrX 125417570 125417978 -37181952 - MLT2A1 LTR ERVL -40 404 1 45940 66 2 7 chrX 125417978 125421626 -37178304 - HERVL-A1-A1 LTR ERVL 0 5654 2037 2276 105 0 0 chrX 125421626 125421920 -37178010 - AluSg SINE Alu -16 294 1 45940 66 2 7 chrX 125421920 125423949 -37175981 - HERVL-A1-A1 LTR ERVL -3617 2037 1 3524 75 21 5 chrX 125423949 125424386 -37175544 - MLT2A1 LTR ERVL 0 444 1 1416 143 14 0 chrX 125424388 125424605 -37175325 - LTR8A-int LTR ERV1 -4706 1240 1021 2174 228 23 22 chrX 125424607 125425541 -37174389 - LTR8A-int LTR ERV1 -5169 1094 1 3782 145 66 24 chrX 125425541 125426239 -37173691 - LTR8A LTR ERV1 0 727 1 262 170 19 19 chrX 125426239 125426292 -37173638 - L2 LINE L2 -67 3246 3194 213 309 0 0 chrX 125426338 125426393 -37173537 - L2 LINE L2 -3 3310 3256 4127 182 30 4 chrX 125426481 125427276 -37172654 - L1MB7 LINE L1 -54 6130 5315 32 26 0 0 chrX 125427312 125427351 -37172579 + AT_rich Low_complexity Low_complexity 1 39 0 1815 156 7 3 chrX 125427351 125427663 -37172267 - AluJo SINE Alu 0 313 1 6292 213 65 87 chrX 125427665 125427779 -37172151 - L1MB7 LINE L1 -816 5330 5215 2287 83 30 0 chrX 125427779 125428081 -37171849 + AluSp SINE Alu 1 311 -2 6292 213 65 87 chrX 125428081 125428292 -37171638 - L1MB7 LINE L1 -931 5215 5001 831 190 0 0 chrX 125428292 125428429 -37171501 + FRAM SINE Alu 1 137 -39 6292 213 65 87 chrX 125428429 125428810 -37171120 - L1MB7 LINE L1 -1145 5001 4613 1780 130 3 51 chrX 125428810 125429103 -37170827 - AluJb SINE Alu 0 312 34 6292 213 65 87 chrX 125429103 125430451 -37169479 - L1MB7 LINE L1 -1533 4613 3193 2340 79 21 0 chrX 125430451 125430741 -37169189 + AluSq SINE Alu 1 296 -17 6292 213 65 87 chrX 125430741 125430903 -37169027 - L1MB7 LINE L1 -2953 3193 3029 2066 266 101 16 chrX 125430960 125431687 -37168243 + L1ME1 LINE L1 5287 6242 -92 2451 107 48 25 chrX 125431687 125432043 -37167887 - THE1B LTR MaLR 0 364 1 2066 266 101 16 chrX 125432043 125432142 -37167788 + L1ME1 LINE L1 6242 6331 -3 2122 118 3 10 chrX 125432186 125432499 -37167431 - AluSq SINE Alu -2 311 1 1779 129 24 0 chrX 125432704 125432952 -37166978 - AluSx SINE Alu -58 254 1 994 151 0 0 chrX 125433678 125433824 -37166106 + AluSg/x SINE Alu 144 289 -23 270 0 0 0 chrX 125433826 125433856 -37166074 + (TA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chrX 125433855 125433881 -37166049 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 2164 123 6 28 chrX 125434694 125435012 -37164918 - AluSx SINE Alu -1 311 1 2702 55 0 0 chrX 125436075 125436386 -37163544 - AluSx SINE Alu -1 311 1 301 180 22 56 chrX 125436735 125436824 -37163106 - L1MB7 LINE L1 -3170 2976 2891 255 103 0 0 chrX 125436954 125436993 -37162937 + (TG)n Simple_repeat Simple_repeat 2 40 0 499 197 19 25 chrX 125436993 125437142 -37162788 + L1MC4 LINE L1 7899 7995 0 476 145 14 0 chrX 125437227 125437296 -37162634 + FAM SINE Alu 95 164 -21 2142 121 0 0 chrX 125437308 125437610 -37162320 + AluSx SINE Alu 1 302 0 38 51 0 0 chrX 125437819 125437878 -37162052 + AT_rich Low_complexity Low_complexity 1 59 0 1699 164 23 26 chrX 125437945 125438250 -37161680 + AluJo SINE Alu 1 304 -8 235 298 96 0 chrX 125438275 125438379 -37161551 - L1MEc LINE L1 -4656 1740 1627 1858 157 0 17 chrX 125438448 125438748 -37161182 - AluJb SINE Alu -17 295 1 412 227 25 17 chrX 125438826 125438945 -37160985 - L1MC4 LINE L1 -4 8038 7919 201 147 0 0 chrX 125439012 125439046 -37160884 + (TCC)n Simple_repeat Simple_repeat 2 35 0 1709 167 0 42 chrX 125439094 125439382 -37160548 + AluJb SINE Alu 1 277 -35 306 0 0 0 chrX 125439382 125439416 -37160514 + (CA)n Simple_repeat Simple_repeat 1 34 0 1709 167 0 42 chrX 125439416 125439438 -37160492 + AluJb SINE Alu 277 298 -14 777 197 56 33 chrX 125439438 125439651 -37160279 - L1MC4 LINE L1 -162 7880 7663 1726 125 33 0 chrX 125439651 125439891 -37160039 + AluSx SINE Alu 1 248 -64 1596 136 0 0 chrX 125439891 125440111 -37159819 - AluSx SINE Alu -92 220 1 469 145 14 0 chrX 125440123 125440192 -37159738 - FAM SINE Alu -21 164 95 494 204 22 21 chrX 125440277 125440432 -37159498 - L1MD3 LINE L1 0 8041 7893 256 0 0 71 chrX 125440468 125440510 -37159420 + (TTTTTA)n Simple_repeat Simple_repeat 4 42 0 6738 21 3 0 chrX 125440511 125441273 -37158657 - L1PA3 LINE L1 -1 6154 5391 2353 102 0 0 chrX 125441816 125442121 -37157809 + AluSx SINE Alu 1 305 -7 924 204 117 34 chrX 125442121 125442386 -37157544 - L1MC4 LINE L1 -369 7673 7387 1880 156 13 7 chrX 125442394 125442702 -37157228 - AluJo SINE Alu -2 310 1 234 0 0 0 chrX 125442982 125443008 -37156922 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 1885 148 7 3 chrX 125443008 125443291 -37156639 - AluSx SINE Alu -28 284 1 670 106 0 97 chrX 125443293 125443321 -37156609 - AluSq/x SINE Alu -178 134 105 2656 40 0 0 chrX 125443321 125443623 -37156307 - AluY SINE Alu -9 302 1 670 106 0 97 chrX 125443623 125443707 -37156223 - AluSq/x SINE Alu -207 105 33 500 244 99 58 chrX 125443756 125444087 -37155843 - L1MEd LINE L1 -4780 1530 1129 2934 207 83 20 chrX 125444093 125444440 -37155490 - MER82 DNA MER2_type -1 652 329 2135 22 0 0 chrX 125444440 125444707 -37155223 + L1PA4 LINE L1 5908 6174 0 2934 207 83 20 chrX 125444707 125444971 -37154959 - MER82 DNA MER2_type -324 329 1 2272 102 3 34 chrX 125445004 125445327 -37154603 - AluSp SINE Alu 0 313 1 539 232 60 148 chrX 125445328 125445746 -37154184 - L1MEd LINE L1 -5040 1079 699 911 193 0 0 chrX 125445748 125445893 -37154037 - AluJb SINE Alu -28 284 140 1914 133 7 23 chrX 125446388 125446690 -37153240 - AluSx SINE Alu -15 297 1 1675 192 0 10 chrX 125446769 125447071 -37152859 - AluJo SINE Alu -9 303 5 332 210 83 4 chrX 125448314 125448413 -37151517 - MLT1I LTR MaLR -3 410 317 513 294 127 75 chrX 125448593 125449158 -37150772 + L2 LINE L2 2667 3265 -7 282 125 0 0 chrX 125449382 125449430 -37150500 + (CCCCG)n Simple_repeat Simple_repeat 5 52 0 2254 70 4 0 chrX 125449440 125449713 -37150217 - AluSq SINE Alu -39 274 1 428 215 47 0 chrX 125450731 125450838 -37149092 + MLT1I LTR MaLR 1 112 -297 698 226 44 13 chrX 125450913 125450994 -37148936 + MLT1I LTR MaLR 246 323 -86 2608 39 3 3 chrX 125450994 125451304 -37148626 - AluY SINE Alu -1 310 1 698 226 44 13 chrX 125451304 125451381 -37148549 + MLT1I LTR MaLR 323 409 0 2647 176 26 0 chrX 125451441 125451856 -37148074 + MSTB LTR MaLR 1 426 0 1956 146 0 19 chrX 125452320 125452635 -37147295 + AluJb SINE Alu 1 309 -3 285 29 0 0 chrX 125452636 125452670 -37147260 + (CA)n Simple_repeat Simple_repeat 1 34 0 309 238 0 0 chrX 125452892 125452955 -37146975 + MLT1K LTR MaLR 524 586 -2 1629 121 27 4 chrX 125453150 125453406 -37146524 + Tigger5 DNA MER2_type 2049 2310 -13 27 86 0 19 chrX 125453426 125453452 -37146478 + AT_rich Low_complexity Low_complexity 1 26 -77 2216 119 0 0 chrX 125453452 125453755 -37146175 - AluSq SINE Alu -10 303 1 27 86 0 19 chrX 125453755 125453833 -37146097 + AT_rich Low_complexity Low_complexity 26 103 0 26 30 0 0 chrX 125453930 125453963 -37145967 + AT_rich Low_complexity Low_complexity 1 33 0 948 113 0 0 chrX 125453963 125454087 -37145843 - FLAM_C SINE Alu -19 124 1 22 35 0 0 chrX 125454225 125454254 -37145676 + AT_rich Low_complexity Low_complexity 1 29 0 696 172 0 67 chrX 125454264 125454398 -37145532 - FLAM_A SINE Alu -8 125 1 1853 148 0 24 chrX 125454507 125454804 -37145126 - AluJb SINE Alu -20 292 3 409 349 15 45 chrX 125456598 125456796 -37143134 + L2 LINE L2 3080 3271 -1 444 256 27 2 chrX 125456804 125456925 -37143005 + MIR3 SINE MIR 75 199 -9 423 284 52 9 chrX 125457171 125457287 -37142643 - L2 LINE L2 0 3313 3193 279 294 78 73 chrX 125457303 125457507 -37142423 + L2 LINE L2 2222 2426 -888 1769 187 106 92 chrX 125457576 125458068 -37141862 + MLT1D LTR MaLR 7 505 0 312 372 14 7 chrX 125458070 125458215 -37141715 + L2 LINE L2 2486 2631 -683 300 304 6 82 chrX 125458269 125458427 -37141503 - L3 LINE CR1 -109 1468 1323 758 178 0 8 chrX 125458483 125458612 -37141318 + MLT2F LTR ERVL 20 147 -516 296 183 33 0 chrX 125459187 125459247 -37140683 - L1ME4a LINE L1 -71 6050 5989 530 247 156 0 chrX 125459266 125459452 -37140478 + MIR SINE MIR 48 262 0 2517 102 36 36 chrX 125459463 125459827 -37140103 - THE1B LTR MaLR 0 364 1 329 190 190 0 chrX 125459922 125460001 -37139929 + L1MC5 LINE L1 7796 7889 -72 234 0 0 0 chrX 125460020 125460046 -37139884 + (TG)n Simple_repeat Simple_repeat 1 26 0 590 261 23 0 chrX 125460527 125460657 -37139273 - MER63 DNA MER1_type -302 760 2 295 208 111 0 chrX 125461157 125461229 -37138701 + MIR SINE MIR 34 113 -95 1628 183 10 0 chrX 125461381 125461671 -37138259 + AluJo SINE Alu 12 304 -8 518 312 116 21 chrX 125462196 125462574 -37137356 - L1ME4a LINE L1 -2015 5793 5380 1681 99 5 5 chrX 125462615 125462838 -37137092 - MER30 DNA MER1_type 0 230 8 6269 218 57 33 chrX 125462852 125462868 -37137062 + L1M4 LINE L1 4 18 -6628 1959 150 14 0 chrX 125462868 125463162 -37136768 + AluSx SINE Alu 1 298 -14 6269 218 57 33 chrX 125463162 125465370 -37134560 + L1M4 LINE L1 18 2379 -4267 1282 152 48 13 chrX 125465379 125465609 -37134321 - L1MB1 LINE L1 -1 6167 5930 2089 131 0 0 chrX 125466342 125466639 -37133291 - AluSx SINE Alu -15 297 1 2906 151 6 20 chrX 125467264 125467755 -37132175 - L1MB1 LINE L1 -196 5972 5489 1814 156 0 26 chrX 125467756 125468064 -37131866 - AluJo SINE Alu -12 300 1 2868 190 109 29 chrX 125468064 125469011 -37130919 + L1MB4 LINE L1 5080 6100 -80 333 289 67 7 chrX 125469037 125469172 -37130758 - L1MB1 LINE L1 -852 5294 5152 220 291 25 0 chrX 125469172 125469251 -37130679 + (CATA)n Simple_repeat Simple_repeat 3 83 0 1646 168 32 3 chrX 125469379 125469664 -37130266 - AluJb SINE Alu -19 293 1 863 229 24 0 chrX 125470035 125470240 -37129690 - MLT1B LTR MaLR 0 390 181 254 193 0 35 chrX 125470282 125470339 -37129591 - MLT1B LTR MaLR -186 188 134 2256 108 3 13 chrX 125470448 125470763 -37129167 + AluSx SINE Alu 1 312 0 624 116 0 0 chrX 125470778 125470873 -37129057 + (TCCC)n Simple_repeat Simple_repeat 4 98 0 432 97 0 0 chrX 125471145 125471207 -37128723 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 292 314 40 16 chrX 125471483 125471536 -37128394 + LTR67 LTR ERVL 431 557 0 299 169 99 0 chrX 125471536 125471607 -37128323 + MLT1K LTR MaLR 511 588 0 328 250 0 0 chrX 125471617 125471685 -37128245 - L2 LINE L2 0 3313 3246 363 252 117 0 chrX 125473378 125473489 -37126441 - L2 LINE L2 -1 3271 3148 296 220 170 10 chrX 125473497 125473597 -37126333 + MIR SINE MIR 105 220 -42 26 0 0 0 chrX 125473682 125473708 -37126222 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chrX 125474132 125474162 -37125768 + AT_rich Low_complexity Low_complexity 1 30 0 4473 204 111 95 chrX 125474760 125475782 -37124148 - L1MD3 LINE L1 -1 8037 6995 2066 241 124 8 chrX 125475782 125476312 -37123618 - MLT1G1 LTR MaLR 0 595 4 4473 204 111 95 chrX 125476312 125476868 -37123062 - L1MD3 LINE L1 -1043 6995 6450 365 329 29 15 chrX 125477130 125477267 -37122663 + L2 LINE L2 2694 2832 -482 893 278 183 37 chrX 125477267 125477883 -37122047 - HAL1 LINE L1 -1800 707 2 478 299 28 7 chrX 125478111 125478255 -37121675 - MIR3 SINE MIR -49 159 13 315 315 35 35 chrX 125479163 125479306 -37120624 + MIR3 SINE MIR 41 183 -25 378 0 0 0 chrX 125479981 125480023 -37119907 + (CA)n Simple_repeat Simple_repeat 2 43 0 229 203 31 31 chrX 125480119 125480183 -37119747 + G-rich Low_complexity Low_complexity 1 64 0 787 305 4 21 chrX 125480710 125480949 -37118981 - MIR SINE MIR -25 237 3 267 314 50 6 chrX 125481178 125481194 -37118736 - L1MA10 LINE L1 0 6334 6319 1347 231 34 0 chrX 125481194 125481488 -37118442 - L1ME1 LINE L1 -6 6160 5857 812 146 22 14 chrX 125481493 125481832 -37118098 + CT-rich Low_complexity Low_complexity 1 341 0 1523 163 22 22 chrX 125481858 125482135 -37117795 - AluJo SINE Alu -3 309 33 1500 185 48 0 chrX 125482135 125482405 -37117525 - L1ME1 LINE L1 -307 5859 5577 252 204 250 65 chrX 125482406 125482514 -37117416 + MER34 LTR ERV1 5 132 -410 1409 198 39 61 chrX 125482588 125482998 -37116932 + MER39 LTR ERV1 307 707 0 6448 182 38 38 chrX 125482998 125483262 -37116668 - L1ME1 LINE L1 -743 5403 5140 1860 104 31 21 chrX 125483262 125483551 -37116379 - L1MA10 LINE L1 -1 6333 6042 6448 182 38 38 chrX 125483551 125485129 -37114801 - L1ME1 LINE L1 -1006 5140 3658 660 298 5 6 chrX 125486105 125486298 -37113632 - MIR SINE MIR -34 228 38 810 210 23 109 chrX 125486681 125486916 -37113014 - MIR SINE MIR -10 252 39 1204 153 9 37 chrX 125486916 125487131 -37112799 - MER3 DNA MER1_type 0 209 1 810 210 23 109 chrX 125487131 125487152 -37112778 - MIR SINE MIR -223 39 18 1892 146 3 7 chrX 125488181 125488643 -37111287 - AluJb SINE Alu 0 462 2 1800 81 0 69 chrX 125488935 125489196 -37110734 - AluSx SINE Alu -69 243 1 2458 93 0 3 chrX 125490147 125490460 -37109470 - AluSx SINE Alu 0 312 1 799 163 124 28 chrX 125490785 125490963 -37108967 - MER31B LTR ERV1 0 466 272 418 271 60 67 chrX 125491046 125491233 -37108697 + MER5B DNA MER1_type 2 176 -2 2361 96 3 0 chrX 125491551 125491853 -37108077 - AluSp SINE Alu -10 303 1 216 158 0 0 chrX 125492112 125492150 -37107780 + (TG)n Simple_repeat Simple_repeat 1 38 0 607 274 104 0 chrX 125493294 125493458 -37106472 + MER91A DNA MER1_type 1 181 -15 804 151 47 73 chrX 125493791 125493870 -37106060 + MER53 DNA DNA 1 81 -108 1900 142 17 0 chrX 125493870 125494159 -37105771 + AluJo SINE Alu 3 296 -16 804 151 47 73 chrX 125494159 125494271 -37105659 + MER53 DNA DNA 81 187 -2 1035 149 28 11 chrX 125494326 125494507 -37105423 - MER5A DNA MER1_type 0 189 6 2110 111 10 0 chrX 125495508 125495805 -37104125 + AluSq SINE Alu 2 301 -12 2051 196 58 112 chrX 125495891 125496405 -37103525 + LTR8 LTR ERV1 1 541 -150 1858 111 57 7 chrX 125496405 125496711 -37103219 - AluSx SINE Alu 0 320 1 2051 196 58 112 chrX 125496711 125496784 -37103146 + LTR8 LTR ERV1 541 549 -142 2203 86 0 0 chrX 125496784 125497105 -37102825 + AluSg SINE Alu 1 321 0 2051 196 58 112 chrX 125497105 125497219 -37102711 + LTR8 LTR ERV1 549 668 -23 187 243 0 0 chrX 125497361 125497398 -37102532 - L2 LINE L2 -12 3301 3265 * 268 212 68 68 chrX 125497376 125497494 -37102436 - MIR SINE MIR -21 241 124 2123 144 0 0 chrX 125497504 125497816 -37102114 - AluSx SINE Alu 0 312 1 2260 141 34 3 chrX 125498132 125498514 -37101416 - L1MA8 LINE L1 -1 6290 5897 724 161 19 0 chrX 125498528 125498689 -37101241 + CT-rich Low_complexity Low_complexity 2 165 0 2124 134 19 0 chrX 125498691 125498998 -37100932 - AluSq SINE Alu 0 313 1 246 282 84 0 chrX 125499264 125499335 -37100595 - MER117 DNA MER1_type -120 77 1 375 229 0 0 chrX 125500298 125500368 -37099562 + MER103 DNA DNA 44 113 -53 2483 130 32 80 chrX 125500368 125500867 -37099063 + L1MA7 LINE L1 5816 6290 -1 2054 155 66 143 chrX 125500893 125501440 -37098490 - MLT1D LTR MaLR 0 505 1 23 0 0 0 chrX 125502403 125502426 -37097504 + AT_rich Low_complexity Low_complexity 1 23 0 343 338 30 38 chrX 125502587 125502720 -37097210 - L2 LINE L2 -4 3268 3137 1122 288 106 60 chrX 125502811 125503120 -37096810 - MLT1L LTR MaLR -5 610 317 1902 131 3 24 chrX 125503120 125503417 -37096513 - AluJb SINE Alu -17 295 5 1122 288 106 60 chrX 125503417 125503530 -37096400 - MLT1L LTR MaLR -298 317 211 923 190 23 0 chrX 125503530 125503704 -37096226 + MER5B DNA MER1_type 1 178 0 1122 288 106 60 chrX 125503704 125503863 -37096067 - MLT1L LTR MaLR -404 211 1 589 196 17 69 chrX 125504521 125504649 -37095281 + MIR SINE MIR 31 149 -113 1963 148 0 7 chrX 125504649 125504946 -37094984 - AluSx SINE Alu -17 295 1 589 196 17 69 chrX 125504946 125504990 -37094940 + MIR SINE MIR 149 194 -68 350 285 91 40 chrX 125505809 125505997 -37093933 + MIR SINE MIR 12 221 -41 306 87 0 0 chrX 125506019 125506065 -37093865 + (TATG)n Simple_repeat Simple_repeat 2 47 0 2145 100 11 0 chrX 125506065 125506344 -37093586 - AluSg SINE Alu -28 282 1 2267 93 0 7 chrX 125507069 125507358 -37092572 + AluSx SINE Alu 1 287 -25 4040 168 29 20 chrX 125507370 125507718 -37092212 - L1MB5 LINE L1 0 6174 5830 1887 150 0 32 chrX 125507718 125508032 -37091898 - AluJb SINE Alu -8 304 1 4040 168 29 20 chrX 125508032 125508525 -37091405 - L1MB5 LINE L1 -344 5830 5326 1774 164 31 17 chrX 125508538 125508830 -37091100 - AluJb SINE Alu -16 296 1 1890 167 0 16 chrX 125508836 125509148 -37090782 - AluJo SINE Alu -5 307 1 1658 196 28 0 chrX 125509153 125509439 -37090491 - AluJb SINE Alu -18 294 1 847 233 41 20 chrX 125509496 125509839 -37090091 - L1M4c LINE L1 -4071 2575 2226 3168 238 92 33 chrX 125509850 125511729 -37088201 - L1M4c LINE L1 -4504 2142 192 1923 99 4 0 chrX 125511765 125512018 -37087912 - AluSx SINE Alu -58 254 1 590 229 137 0 chrX 125513282 125513435 -37086495 - MIR SINE MIR -5 257 84 530 195 110 0 chrX 125513476 125513594 -37086336 + MIR3 SINE MIR 78 208 0 844 238 9 61 chrX 125513924 125514155 -37085775 - L2 LINE L2 -1 3312 3094 207 0 0 0 chrX 125514203 125514226 -37085704 + (T)n Simple_repeat Simple_repeat 1 23 0 529 274 113 25 chrX 125514268 125514367 -37085563 + MIR SINE MIR 23 112 -150 1884 199 32 135 chrX 125514367 125514499 -37085431 - MLT2F LTR ERVL 0 663 519 2370 83 3 3 chrX 125514499 125514801 -37085129 + AluSx SINE Alu 1 302 -10 1884 199 32 135 chrX 125514801 125515111 -37084819 - MLT2F LTR ERVL -144 519 325 2074 140 3 0 chrX 125515111 125515403 -37084527 + AluSx SINE Alu 1 293 -19 1884 199 32 135 chrX 125515403 125515698 -37084232 - MLT2F LTR ERVL -338 325 1 529 274 113 25 chrX 125515698 125515802 -37084128 + MIR SINE MIR 112 244 -18 407 210 24 40 chrX 125516128 125516252 -37083678 - MIR3 SINE MIR -1 207 86 27 73 0 0 chrX 125516637 125516692 -37083238 + AT_rich Low_complexity Low_complexity 1 55 0 200 43 64 21 chrX 125516695 125516742 -37083188 + (TA)n Simple_repeat Simple_repeat 1 49 0 470 231 58 23 chrX 125517176 125517349 -37082581 - L1ME1 LINE L1 0 6166 5988 2263 91 0 20 chrX 125519364 125519662 -37080268 + AluSg SINE Alu 1 292 -18 272 313 150 26 chrX 125520187 125520420 -37079510 - L3b LINE CR1 -119 1464 1203 520 278 51 6 chrX 125520545 125520721 -37079209 - MIR SINE MIR -3 259 76 195 146 0 0 chrX 125520813 125520854 -37079076 + (CA)n Simple_repeat Simple_repeat 2 42 0 542 245 63 19 chrX 125521583 125521742 -37078188 + MIR SINE MIR 37 202 -60 2323 101 7 0 chrX 125522027 125522333 -37077597 - AluSx SINE Alu -4 308 1 373 198 22 22 chrX 125522429 125522520 -37077410 + Charlie7 DNA MER1_type 1 91 -2521 499 184 193 9 chrX 125522521 125522558 -37077372 - FLAM_A SINE Alu -176 135 106 198 0 0 0 chrX 125522558 125522580 -37077350 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 499 184 193 9 chrX 125522580 125522656 -37077274 - FLAM_A SINE Alu -205 106 1 426 303 60 5 chrX 125522660 125522845 -37077085 + Charlie7 DNA MER1_type 130 324 -2288 2145 209 136 45 chrX 125522880 125523628 -37076302 + Charlie7 DNA MER1_type 1486 2347 -265 2468 53 3 7 chrX 125523628 125523928 -37076002 + AluY SINE Alu 1 299 -12 2145 209 136 45 chrX 125523928 125524162 -37075768 + Charlie7 DNA MER1_type 2347 2558 -54 2052 106 16 16 chrX 125524482 125524793 -37075137 + AluSx SINE Alu 1 311 -1 530 278 167 5 chrX 125525051 125525267 -37074663 + MIR SINE MIR 12 262 0 278 279 7 73 chrX 125525265 125525401 -37074529 + L2 LINE L2 3187 3313 0 * 5970 92 88 0 chrX 125525508 125525880 -37074050 - L1PA16 LINE L1 0 6166 5828 396 0 0 0 chrX 125525880 125525924 -37074006 + (TA)n Simple_repeat Simple_repeat 1 44 0 5970 92 88 0 chrX 125525924 125526224 -37073706 - L1PA16 LINE L1 -338 5828 5556 1805 161 18 3 chrX 125526224 125526510 -37073420 - AluJb SINE Alu -20 292 3 2129 151 0 3 chrX 125526515 125526826 -37073104 - AluJb SINE Alu -2 310 1 5970 92 88 0 chrX 125526826 125527070 -37072860 - L1PA16 LINE L1 -613 5553 5231 284 258 39 96 chrX 125527964 125528142 -37071788 + L2 LINE L2 3141 3308 -5 2210 129 0 3 chrX 125528867 125529178 -37070752 - AluSx SINE Alu -2 310 1 855 279 38 55 chrX 125529522 125529888 -37070042 + L2 LINE L2 2954 3313 0 1959 144 0 35 chrX 125530175 125530488 -37069442 + AluSx SINE Alu 1 302 -10 2256 132 0 0 chrX 125530587 125530897 -37069033 + AluSx SINE Alu 1 310 -2 377 70 23 105 chrX 125530982 125531068 -37068862 - MER53 DNA DNA -18 171 93 307 289 13 0 chrX 125531107 125531183 -37068747 - L3 LINE CR1 -1070 507 431 433 92 66 13 chrX 125531196 125531272 -37068658 - MADE1 DNA Mariner 0 80 1 311 138 207 23 chrX 125531448 125531535 -37068395 - MER103 DNA DNA -6 160 58 25 31 0 0 chrX 125532140 125532172 -37067758 + AT_rich Low_complexity Low_complexity 1 32 0 444 56 83 14 chrX 125532801 125532873 -37067057 - MADE1 DNA Mariner 0 80 4 213 245 0 19 chrX 125532979 125533032 -37066898 + L2 LINE L2 3221 3272 0 1000 195 32 41 chrX 125533145 125533366 -37066564 - MER20 DNA MER1_type 0 219 1 2984 76 19 2 chrX 125533371 125533781 -37066149 + L1PA14 LINE L1 5742 6158 -3 1720 157 88 0 chrX 125533953 125534284 -37065646 + L1MB5 LINE L1 5741 6100 -74 363 158 40 0 chrX 125534349 125534425 -37065505 + L1MB5 LINE L1 6088 6166 -8 305 266 128 0 chrX 125534679 125534773 -37065157 + MIR SINE MIR 157 262 0 2108 110 34 7 chrX 125535065 125535356 -37064574 + AluSx SINE Alu 1 299 -13 234 315 0 0 chrX 125537971 125538025 -37061905 + L2 LINE L2 3132 3185 -87 647 280 277 6 chrX 125538137 125538455 -37061475 - L2 LINE L2 -2 3270 2867 186 43 0 0 chrX 125538625 125538648 -37061282 + (CAA)n Simple_repeat Simple_repeat 1 23 0 297 0 0 0 chrX 125538649 125538682 -37061248 + (CA)n Simple_repeat Simple_repeat 1 33 0 796 299 60 34 chrX 125538721 125539306 -37060624 + L1ME3 LINE L1 5257 5856 -306 574 213 8 16 chrX 125539532 125539659 -37060271 + MER63 DNA MER1_type 2 753 -309 342 232 12 0 chrX 125539659 125539741 -37060189 + MER63 DNA MER1_type 978 1060 0 75 79 0 10 chrX 125540656 125540707 -37059223 + AT_rich Low_complexity Low_complexity 1 51 -149 261 0 0 0 chrX 125540707 125540736 -37059194 + (TA)n Simple_repeat Simple_repeat 2 30 0 2242 114 0 3 chrX 125540736 125541035 -37058895 - AluSx SINE Alu -13 299 2 75 79 0 10 chrX 125541035 125541184 -37058746 + AT_rich Low_complexity Low_complexity 49 200 0 21 36 0 0 chrX 125541294 125541322 -37058608 + AT_rich Low_complexity Low_complexity 1 28 0 2017 117 7 4 chrX 125541406 125541687 -37058243 - AluSx SINE Alu -16 296 15 234 164 0 0 chrX 125542681 125542736 -37057194 + (ATG)n Simple_repeat Simple_repeat 2 56 0 1713 158 38 0 chrX 125543440 125543706 -37056224 + AluJo SINE Alu 1 276 -36 180 0 0 0 chrX 125543714 125543734 -37056196 + (CAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chrX 125543943 125543964 -37055966 + AT_rich Low_complexity Low_complexity 1 21 0 658 270 0 17 chrX 125543966 125544144 -37055786 + MER5B DNA MER1_type 4 178 0 251 268 0 27 chrX 125544171 125544283 -37055647 - MLT1K LTR MaLR -12 576 468 2312 113 0 0 chrX 125544761 125545063 -37054867 - AluSq SINE Alu -11 302 1 615 203 8 0 chrX 125545129 125545257 -37054673 - MER94 DNA DNA -5 129 1 735 280 34 48 chrX 125545257 125545636 -37054294 - L1ME LINE L1 -427 5694 5321 1954 130 7 4 chrX 125545742 125546018 -37053912 - AluSx SINE Alu -15 297 21 1707 175 7 10 chrX 125546164 125546455 -37053475 - AluJo SINE Alu -9 303 14 372 297 34 55 chrX 125546814 125547050 -37052880 - L1ME LINE L1 -1663 4483 4253 999 136 0 0 chrX 125547058 125547256 -37052674 - AluSg/x SINE Alu 0 333 136 1244 104 0 0 chrX 125547433 125547596 -37052334 - AluSg/x SINE Alu -14 296 134 325 308 39 26 chrX 125547712 125547946 -37051984 - L1ME LINE L1 -2210 3936 3700 379 304 55 109 chrX 125548075 125548724 -37051206 + L2 LINE L2 1819 2432 -882 356 230 96 52 chrX 125548812 125548947 -37050983 - Charlie8 DNA MER1_type -2205 212 72 2105 126 20 0 chrX 125549094 125549395 -37050535 - AluSx SINE Alu -5 307 1 3580 111 22 43 chrX 125549497 125549880 -37050050 - L1MA5A LINE L1 -8 6289 5900 1749 132 90 39 chrX 125549880 125550235 -37049695 - THE1C LTR MaLR -2 373 1 3580 111 22 43 chrX 125550235 125550322 -37049608 - L1MA5A LINE L1 -397 5900 5813 2038 158 0 0 chrX 125550322 125550625 -37049305 - AluJb SINE Alu -9 303 1 3580 111 22 43 chrX 125550625 125550784 -37049146 - L1MA5A LINE L1 -484 5813 5672 1260 220 86 40 chrX 125550791 125551196 -37048734 - L1ME2 LINE L1 -9 6155 5732 713 199 0 14 chrX 125551855 125551996 -37047934 + FLAM_C SINE Alu 3 141 -2 198 167 0 0 chrX 125552107 125552143 -37047787 + (TA)n Simple_repeat Simple_repeat 2 37 0 942 268 36 3 chrX 125552177 125552509 -37047421 - L1ME3A LINE L1 -220 5950 5608 313 256 189 53 chrX 125552633 125552763 -37047167 - MLT1J LTR MaLR -43 468 357 1318 230 72 3 chrX 125552763 125553081 -37046849 + MER58B DNA MER1_type 1 340 -1 313 256 189 53 chrX 125553081 125553235 -37046695 - MLT1J LTR MaLR -154 357 145 2349 112 123 5 chrX 125553301 125553684 -37046246 + MSTA LTR MaLR 1 428 0 297 0 0 0 chrX 125553686 125553719 -37046211 + (CA)n Simple_repeat Simple_repeat 2 34 0 322 213 71 49 chrX 125553741 125553924 -37046006 - HAL1 LINE L1 -1411 1096 910 485 213 34 53 chrX 125553927 125554134 -37045796 - L1ME3A LINE L1 -5 6165 5963 1022 235 72 50 chrX 125554186 125554642 -37045288 - L1MC5 LINE L1 -430 7531 7066 1062 232 34 13 chrX 125554682 125554919 -37045011 + MLT2E LTR ERVL 18 259 -369 436 122 61 0 chrX 125554953 125555035 -37044895 - MER53 DNA DNA -1 188 102 286 295 29 14 chrX 125555037 125555176 -37044754 + (TA)n Simple_repeat Simple_repeat 2 142 0 553 236 25 31 chrX 125555291 125555370 -37044560 + MLT2E LTR ERVL 469 547 -81 1061 213 97 5 chrX 125555370 125555586 -37044344 - MER8 DNA MER2_type -3 236 1 553 236 25 31 chrX 125555586 125555667 -37044263 + MLT2E LTR ERVL 547 628 0 1746 166 23 19 chrX 125555852 125556056 -37043874 - AluJb SINE Alu -4 308 101 1869 140 161 11 chrX 125556056 125556428 -37043502 + MSTA LTR MaLR 1 428 0 1746 166 23 19 chrX 125556428 125556530 -37043400 - AluJb SINE Alu -211 101 1 261 57 0 0 chrX 125557876 125557911 -37042019 + (TG)n Simple_repeat Simple_repeat 2 36 0 374 206 0 0 chrX 125558053 125558126 -37041804 - HAL1 LINE L1 -619 1888 1816 726 256 84 0 chrX 125558168 125558359 -37041571 + MLT1J LTR MaLR 3 209 -302 1783 185 97 8 chrX 125558544 125559032 -37040898 - L1MC4 LINE L1 -2 7807 7274 9413 161 25 38 chrX 125559062 125561751 -37038179 + L1PA14 LINE L1 3538 6159 -2 3517 177 41 8 chrX 125561751 125562507 -37037423 - L1MB5 LINE L1 -9 6663 5883 581 208 20 10 chrX 125562512 125562709 -37037221 - L1MB5 LINE L1 -2827 3817 3619 2314 220 32 30 chrX 125562716 125563546 -37036384 - L1MB5 LINE L1 -3254 3390 2564 2304 103 0 0 chrX 125563546 125563846 -37036084 - AluSx SINE Alu -12 300 1 2314 220 32 30 chrX 125563846 125564030 -37035900 - L1MB5 LINE L1 -4080 2564 2382 200 35 35 0 chrX 125564030 125564059 -37035871 + (TA)n Simple_repeat Simple_repeat 2 31 0 2314 220 32 30 chrX 125564059 125564236 -37035694 - L1MB5 LINE L1 -4262 2382 2207 360 165 0 0 chrX 125564236 125564315 -37035615 - L1MA9 LINE L1 -5 6307 6229 2314 220 32 30 chrX 125564315 125564869 -37035061 - L1MB5 LINE L1 -4437 2207 1546 297 0 0 0 chrX 125564920 125564953 -37034977 + (TTA)n Simple_repeat Simple_repeat 2 34 0 887 124 0 0 chrX 125564956 125565077 -37034853 - AluJb SINE Alu -191 121 1 1589 224 6 32 chrX 125565086 125565582 -37034348 - L1MB5 LINE L1 -4985 1557 1075 722 153 0 46 chrX 125565585 125565716 -37034214 - FLAM_C SINE Alu -6 137 13 2277 267 52 31 chrX 125565723 125566767 -37033163 - L1MB5 LINE L1 -5475 1067 2 2175 121 7 0 chrX 125566784 125567089 -37032841 - AluSg SINE Alu -1 309 3 288 53 0 0 chrX 125567415 125567453 -37032477 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 372 262 57 49 chrX 125567906 125568028 -37031902 - L2 LINE L2 -10 3262 3140 374 282 6 80 chrX 125569382 125569545 -37030385 - L2 LINE L2 -189 3083 2933 993 157 0 0 chrX 125569791 125569938 -37029992 + FRAM SINE Alu 1 146 -30 2043 184 75 11 chrX 125570096 125570573 -37029357 + Charlie4a DNA MER1_type 1 508 0 1211 77 6 0 chrX 125571052 125571220 -37028710 - L1PA6 LINE L1 -149 6005 5837 240 100 0 0 chrX 125571776 125571816 -37028114 + (TAAAAA)n Simple_repeat Simple_repeat 3 42 0 7140 42 22 0 chrX 125571899 125572973 -37026957 - L1PA6 LINE L1 -2 6152 5076 297 182 26 65 chrX 125573006 125573083 -37026847 + MIR SINE MIR 183 256 -6 228 67 0 0 chrX 125573083 125573113 -37026817 + (CAT)n Simple_repeat Simple_repeat 2 31 0 226 308 34 0 chrX 125573417 125573534 -37026396 - MER103 DNA DNA -45 121 1 945 205 0 54 chrX 125573976 125574056 -37025874 - MER45A DNA AcHobo -1405 176 93 2107 157 0 0 chrX 125574056 125574350 -37025580 + AluSx SINE Alu 1 294 -18 945 205 0 54 chrX 125574350 125574454 -37025476 - MER45A DNA AcHobo -1488 93 2 6710 191 39 18 chrX 125574597 125576390 -37023540 + L1MA8 LINE L1 1 1755 -4573 2399 80 26 0 chrX 125576390 125576692 -37023238 + AluSg SINE Alu 1 310 0 6710 191 39 18 chrX 125576692 125578341 -37021589 + L1MA8 LINE L1 1755 3517 -2811 2050 147 0 13 chrX 125578342 125578648 -37021282 + AluSx SINE Alu 1 302 -10 3290 161 34 10 chrX 125578648 125579312 -37020618 + L1MA8 LINE L1 3784 4466 -1862 1491 104 9 0 chrX 125679312 125679533 -36920397 - L1PA16 LINE L1 -337 5829 5607 810 20 10 0 chrX 125679704 125679850 -36920080 + L1PA4 LINE L1 6052 6198 0 1279 212 93 4 chrX 125680251 125680520 -36919410 - AluJo SINE Alu -19 293 1 204 40 0 0 chrX 125680849 125680874 -36919056 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3520 129 31 0 chrX 125681130 125681674 -36918256 + L1MA8 LINE L1 5511 6071 -402 253 282 39 13 chrX 125682460 125682538 -36917392 - MLT1I LTR MaLR 0 409 330 317 340 44 25 chrX 125682682 125682885 -36917045 - MLT1I LTR MaLR -202 207 1 434 289 55 60 chrX 125683085 125683286 -36916644 + MIR SINE MIR 49 248 -14 455 282 141 9 chrX 125683378 125683598 -36916332 + MIR SINE MIR 14 262 0 289 260 14 14 chrX 125683687 125683760 -36916170 + MER5A DNA MER1_type 4 76 -113 234 250 303 13 chrX 125683799 125683875 -36916055 + MER5A DNA MER1_type 63 160 -29 2709 113 8 0 chrX 125683886 125684258 -36915672 - MSTA LTR MaLR -53 375 1 328 373 67 0 chrX 125684258 125684387 -36915543 + MIR3 SINE MIR 31 168 -40 283 279 10 48 chrX 125684387 125684506 -36915424 - MER5B DNA MER1_type -3 175 72 271 298 12 0 chrX 125684702 125684786 -36915144 + MIR SINE MIR 167 251 -11 2242 93 10 0 chrX 125686029 125686319 -36913611 - AluSx SINE Alu -19 293 1 343 281 0 0 chrX 125686344 125686426 -36913504 - L2 LINE L2 -5 3308 3227 1251 172 0 39 chrX 125686435 125686668 -36913262 + AluJb SINE Alu 87 310 -2 2260 159 62 5 chrX 125686876 125687278 -36912652 + MSTB LTR MaLR 2 426 0 279 0 0 0 chrX 125687319 125687350 -36912580 + (TA)n Simple_repeat Simple_repeat 2 32 0 205 152 0 0 chrX 125687676 125687709 -36912221 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 340 278 157 26 chrX 125687711 125687826 -36912104 - L2 LINE L2 0 3272 3143 3245 149 35 22 chrX 125688130 125688679 -36911251 - MER21A LTR ERV1 0 931 376 1424 127 35 9 chrX 125688684 125688913 -36911017 - MER21A LTR ERV1 -667 264 30 329 250 21 31 chrX 125688931 125689027 -36910903 + L1MC4 LINE L1 6614 6708 -1334 305 260 0 73 chrX 125688951 125689047 -36910883 - L1MC4 LINE L1 -1339 6703 6615 * 212 143 83 0 chrX 125689051 125689135 -36910795 + (TA)n Simple_repeat Simple_repeat 1 91 0 1757 193 85 44 chrX 125689964 125690445 -36909485 - MLT1D LTR MaLR -2 503 3 905 191 74 31 chrX 125690470 125690726 -36909204 + ORSL DNA AcHobo 9 275 0 2097 120 3 7 chrX 125691243 125691543 -36908387 - AluSq SINE Alu -14 299 1 830 251 9 42 chrX 125692130 125692345 -36907585 - MIR SINE MIR -54 208 1 839 174 80 171 chrX 125692607 125692764 -36907166 + LTR8 LTR ERV1 1 90 -601 1983 126 0 39 chrX 125692764 125693074 -36906856 + AluJb SINE Alu 1 298 -14 839 174 80 171 chrX 125693074 125693203 -36906727 + LTR8 LTR ERV1 90 229 -462 1295 194 51 118 chrX 125693302 125693775 -36906155 + LTR8A LTR ERV1 287 727 0 649 350 101 16 chrX 125694191 125694568 -36905362 - L3 LINE CR1 -9 1568 1160 283 360 18 62 chrX 125695348 125695573 -36904357 + L2 LINE L2 322 536 -2778 249 330 287 4 chrX 125695863 125696124 -36903806 + L2 LINE L2 1846 2180 -1134 2345 99 0 0 chrX 125696674 125696976 -36902954 + AluSg SINE Alu 1 302 -8 484 199 76 61 chrX 125697213 125697426 -36902504 + MLT1E1 LTR MaLR 1 278 -376 479 118 0 0 chrX 125697475 125697543 -36902387 + LTR53 LTR ERVL 452 519 0 2676 107 38 19 chrX 125697680 125698099 -36901831 - MSTA LTR MaLR 0 428 2 307 299 47 45 chrX 125698217 125698365 -36901565 - MER5A DNA MER1_type -28 161 2 3192 134 21 58 chrX 125698384 125699016 -36900914 + LTR9 LTR ERV1 5 612 0 461 206 30 61 chrX 125699070 125699201 -36900729 - MLT1E3 LTR MaLR -198 426 300 3085 170 26 0 chrX 125699325 125699831 -36900099 - LTR53 LTR ERVL 0 519 1 1910 128 49 3 chrX 125700033 125700321 -36899609 - AluJb SINE Alu -6 306 6 21 0 0 0 chrX 125700328 125700349 -36899581 + AT_rich Low_complexity Low_complexity 1 21 0 592 200 78 0 chrX 125700351 125700466 -36899464 + FLAM_C SINE Alu 1 124 -19 32 43 0 0 chrX 125700466 125700512 -36899418 + AT_rich Low_complexity Low_complexity 1 46 0 240 163 0 0 chrX 125700784 125700827 -36899103 + CT-rich Low_complexity Low_complexity 3 45 0 1887 151 93 24 chrX 125702223 125702716 -36897214 + MER44D DNA MER2_type 1 605 0 1413 177 7 14 chrX 125703425 125703702 -36896228 - AluJo SINE Alu -1 311 37 265 250 87 0 chrX 125703780 125703872 -36896058 + L1 LINE L1 4733 4832 -1314 22 56 0 0 chrX 125704037 125704073 -36895857 + AT_rich Low_complexity Low_complexity 1 36 0 278 305 128 5 chrX 125704256 125704459 -36895471 + L1ME LINE L1 5328 5555 -609 1633 65 0 39 chrX 125704476 125704511 -36895419 - L1PA6 LINE L1 -248 5906 5871 384 20 0 0 chrX 125704511 125704561 -36895369 - L1PA6 LINE L1 0 6154 6105 1633 65 0 39 chrX 125704561 125704756 -36895174 - L1PA6 LINE L1 -283 5871 5685 * 5233 55 1 10 chrX 125704755 125705464 -36894466 + L1P LINE L1 4691 5393 -753 627 237 106 62 chrX 125705454 125705812 -36894118 + L1MC4a LINE L1 5508 5825 -296 * 1946 98 11 0 chrX 125705817 125706083 -36893847 + AluSq SINE Alu 43 311 -2 2499 105 3 0 chrX 125706296 125706649 -36893281 + THE1A LTR MaLR 1 354 -1 253 248 248 0 chrX 125706951 125707076 -36892854 - L1ME4a LINE L1 -5 6116 5961 266 356 98 0 chrX 125707177 125707340 -36892590 - L2 LINE L2 -955 2359 2181 1616 171 108 67 chrX 125707572 125707797 -36892133 - Charlie1b DNA MER1_type -2256 505 291 1532 224 9 0 chrX 125707797 125708141 -36891789 + L1PB4 LINE L1 5807 6153 -3 1616 171 108 67 chrX 125708141 125708263 -36891667 - Charlie1b DNA MER1_type -2470 291 176 2260 108 3 0 chrX 125708263 125708569 -36891361 + AluSc SINE Alu 3 309 0 1616 171 108 67 chrX 125708569 125708594 -36891336 - Charlie1b DNA MER1_type -2585 176 153 1692 180 17 7 chrX 125708594 125708888 -36891042 - AluJo SINE Alu -11 301 5 1616 171 108 67 chrX 125708888 125708993 -36890937 - Charlie1b DNA MER1_type -2608 153 6 773 312 84 43 chrX 125709088 125709674 -36890256 + L2 LINE L2 2693 3308 -5 2551 111 5 13 chrX 125711262 125711640 -36888290 + THE1C LTR MaLR 1 375 0 22 0 0 0 chrX 125711741 125711763 -36888167 + AT_rich Low_complexity Low_complexity 1 22 0 283 253 27 13 chrX 125711901 125711976 -36887954 + L2 LINE L2 3234 3309 -4 204 259 0 19 chrX 125714819 125714873 -36885057 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 0 0 0 chrX 125714968 125714990 -36884940 + (A)n Simple_repeat Simple_repeat 1 22 0 249 127 16 32 chrX 125715170 125715233 -36884697 + CT-rich Low_complexity Low_complexity 1 62 0 222 266 0 0 chrX 125715537 125715601 -36884329 + (CA)n Simple_repeat Simple_repeat 1 64 0 192 125 0 0 chrX 125718895 125718927 -36881003 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 216 0 0 0 chrX 125719026 125719050 -36880880 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 225 0 0 0 chrX 125719049 125719074 -36880856 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chrX 125719127 125719157 -36880773 + AT_rich Low_complexity Low_complexity 1 30 0 588 84 0 0 chrX 125723648 125723731 -36876199 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 23 68 0 0 chrX 125723879 125723923 -36876007 + AT_rich Low_complexity Low_complexity 1 44 0 270 220 0 0 chrX 125725017 125725067 -36874863 + L2 LINE L2 3223 3272 0 753 323 99 32 chrX 125725165 125725621 -36874309 - L2 LINE L2 -547 2767 2266 1431 205 14 27 chrX 125725621 125725914 -36874016 + AluJb SINE Alu 1 289 -23 753 323 99 32 chrX 125725914 125726015 -36873915 - L2 LINE L2 -1048 2266 2173 870 249 65 44 chrX 125726020 125726184 -36873746 + MER2 DNA MER2_type 1 160 -185 700 188 0 16 chrX 125726184 125726312 -36873618 + FLAM_A SINE Alu 2 127 -6 870 249 65 44 chrX 125726312 125726485 -36873445 + MER2 DNA MER2_type 160 345 0 871 128 27 0 chrX 125726764 125726913 -36873017 + L1MB1 LINE L1 6011 6163 -5 23 0 0 0 chrX 125726958 125726981 -36872949 + AT_rich Low_complexity Low_complexity 1 23 0 1560 289 34 45 chrX 125726989 125727542 -36872388 + L2 LINE L2 2431 2977 -337 918 153 89 138 chrX 125727574 125727751 -36872179 - MLT1A1 LTR MaLR -52 313 158 195 69 0 0 chrX 125727751 125727780 -36872150 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 918 153 89 138 chrX 125727780 125727929 -36872001 - MLT1A1 LTR MaLR -207 158 3 1013 299 87 21 chrX 125728055 125728433 -36871497 + L2 LINE L2 2911 3313 0 711 245 84 26 chrX 125728470 125728919 -36871011 + L1ME4a LINE L1 5575 6088 -33 206 279 16 0 chrX 125729883 125729944 -36869986 + (TA)n Simple_repeat Simple_repeat 2 63 0 240 35 0 0 chrX 125731302 125731331 -36868599 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 1396 168 0 103 chrX 125731335 125731656 -36868274 - AluJb SINE Alu -14 288 1 290 155 70 0 chrX 125731708 125731779 -36868151 - L1ME4a LINE L1 -5 6116 6041 189 224 0 0 chrX 125731900 125731958 -36867972 + (CATA)n Simple_repeat Simple_repeat 1 58 0 180 158 0 0 chrX 125731957 125731995 -36867935 + GA-rich Low_complexity Low_complexity 2 39 0 * 708 290 29 7 chrX 125732135 125732407 -36867523 - L1ME4a LINE L1 -296 5825 5548 2108 129 0 0 chrX 125732426 125732721 -36867209 - AluSg1 SINE Alu -11 298 4 1908 158 54 40 chrX 125732888 125733312 -36866618 - MSTB1 LTR MaLR 0 432 3 542 266 7 28 chrX 125733377 125733520 -36866410 + MIR3 SINE MIR 23 162 -46 22 0 0 0 chrX 125734824 125734846 -36865084 + AT_rich Low_complexity Low_complexity 1 22 0 344 417 36 0 chrX 125735604 125735796 -36864134 + MIR3 SINE MIR 3 201 -7 408 302 41 47 chrX 125736912 125737084 -36862846 - L2 LINE L2 0 3272 3102 2028 205 22 54 chrX 125737251 125737753 -36862177 + MLT1D LTR MaLR 20 505 0 595 243 33 71 chrX 125738416 125738626 -36861304 + MIR SINE MIR 61 262 0 38 22 0 0 chrX 125739147 125739192 -36860738 + AT_rich Low_complexity Low_complexity 1 45 0 677 154 51 8 chrX 125739192 125739309 -36860621 - FLAM_C SINE Alu -9 124 3 1128 239 7 29 chrX 125739337 125739646 -36860284 + AluSq SINE Alu 2 303 0 363 343 37 37 chrX 125739663 125739863 -36860067 - L2 LINE L2 -569 2745 2543 1138 173 5 0 chrX 125739863 125740048 -36859882 - MER5A DNA MER1_type 0 189 4 363 343 37 37 chrX 125740048 125740118 -36859812 - L2 LINE L2 -770 2544 2475 588 179 0 9 chrX 125740237 125740349 -36859581 - FLAM_C SINE Alu -7 136 26 184 309 0 15 chrX 125740518 125740586 -36859344 - L2 LINE L2 -939 2375 2309 908 199 6 0 chrX 125740720 125740881 -36859049 - FRAM SINE Alu -16 160 1 299 213 100 12 chrX 125743823 125743903 -36856027 - L2 LINE L2 0 3272 3186 22 0 0 0 chrX 125744266 125744288 -36855642 + AT_rich Low_complexity Low_complexity 1 22 0 645 298 5 11 chrX 125744686 125744874 -36855056 - MIR SINE MIR -20 242 56 336 395 72 21 chrX 125745371 125745705 -36854225 + L2 LINE L2 2155 2505 -809 426 277 27 0 chrX 125746156 125746268 -36853662 + L2 LINE L2 3199 3313 0 344 278 32 24 chrX 125747306 125747432 -36852498 + MIR3 SINE MIR 71 197 -11 2041 132 2 97 chrX 125747874 125748277 -36851653 - MLT1A1 LTR MaLR 0 365 1 201 39 0 0 chrX 125750698 125750724 -36849206 + (CA)n Simple_repeat Simple_repeat 1 26 0 1174 286 95 34 chrX 125750729 125751286 -36848644 - MLT1E LTR MaLR -2 591 1 268 258 32 0 chrX 125751402 125751464 -36848466 - L2 LINE L2 -3 3269 3206 249 98 0 0 chrX 125751652 125751693 -36848237 + (CA)n Simple_repeat Simple_repeat 2 42 0 238 386 0 20 chrX 125753217 125753318 -36846612 + MIR SINE MIR 31 129 -79 241 260 0 0 chrX 125755057 125755107 -36844823 - L2 LINE L2 -13 3300 3251 30 27 0 0 chrX 125755935 125755972 -36843958 + AT_rich Low_complexity Low_complexity 1 37 0 917 328 138 34 chrX 125756585 125757325 -36842605 - L2 LINE L2 -661 2653 1837 812 229 52 41 chrX 125757544 125757815 -36842115 - MLT1L LTR MaLR -222 393 120 3426 165 22 59 chrX 125757893 125758257 -36841673 - L1MB7 LINE L1 -13 6171 5795 1190 193 106 6 chrX 125758257 125758568 -36841362 - MER2 DNA MER2_type 0 344 3 3426 165 22 59 chrX 125758568 125759010 -36840920 - L1MB7 LINE L1 -389 5795 5394 2244 92 0 64 chrX 125759135 125759463 -36840467 - AluSx SINE Alu -5 307 1 2111 137 0 6 chrX 125759473 125759787 -36840143 - AluSx SINE Alu 0 312 1 21 71 0 0 chrX 125760144 125760186 -36839744 + AT_rich Low_complexity Low_complexity 1 42 0 232 275 0 25 chrX 125760770 125760850 -36839080 + MLT1L LTR MaLR 6 83 -532 193 269 17 109 chrX 125760949 125761068 -36838862 - MER5B DNA MER1_type -54 124 17 2318 104 0 0 chrX 125761274 125761582 -36838348 - AluSc SINE Alu -1 308 1 21 36 0 0 chrX 125761587 125761615 -36838315 + AT_rich Low_complexity Low_complexity 1 28 0 791 237 17 11 chrX 125762489 125762666 -36837264 - MER5B DNA MER1_type 0 178 1 378 276 38 9 chrX 125762674 125762779 -36837151 + L2 LINE L2 3199 3306 -7 3892 125 5 8 chrX 125762856 125763450 -36836480 + L1PA15 LINE L1 5566 6157 -8 4165 99 93 105 chrX 125763678 125765126 -36834804 + pTR5 LTR ERV1 66 2438 0 207 0 0 0 chrX 125766319 125766342 -36833588 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1891 147 20 10 chrX 125767436 125767729 -36832201 - AluSx SINE Alu -14 298 3 1073 144 70 51 chrX 125767812 125768027 -36831903 - MER20 DNA MER1_type 0 219 1 199 95 48 32 chrX 125769567 125769630 -36830300 + CT-rich Low_complexity Low_complexity 3 66 0 809 349 97 42 chrX 125770158 125771304 -36828626 - L2 LINE L2 0 3272 2069 402 219 24 12 chrX 125772446 125772615 -36827315 + (TA)n Simple_repeat Simple_repeat 2 172 0 183 184 0 0 chrX 125772663 125772701 -36827229 + (TATG)n Simple_repeat Simple_repeat 2 39 0 369 200 114 76 chrX 125774628 125774657 -36825273 - L2 LINE L2 0 3313 3287 2230 75 7 33 chrX 125774657 125774963 -36824967 + AluSx SINE Alu 1 298 -14 369 200 114 76 chrX 125774963 125775038 -36824892 - L2 LINE L2 -26 3287 3205 25 51 0 0 chrX 125775455 125775494 -36824436 + AT_rich Low_complexity Low_complexity 1 39 0 726 287 28 28 chrX 125777615 125777869 -36822061 - MIR SINE MIR -6 256 3 3359 87 8 18 chrX 125778964 125779468 -36820462 - L1MA4A LINE L1 -12 6291 5793 423 92 0 0 chrX 125779781 125779846 -36820084 + (TC)n Simple_repeat Simple_repeat 1 65 0 306 0 0 0 chrX 125779847 125779881 -36820049 + (TG)n Simple_repeat Simple_repeat 2 35 0 714 261 35 50 chrX 125780388 125780671 -36819259 + L2 LINE L2 3034 3312 -1 1120 221 98 4 chrX 125780888 125781164 -36818766 - L1ME3A LINE L1 -22 6148 5847 495 337 30 56 chrX 125782464 125782731 -36817199 - MIR SINE MIR 0 262 3 1067 199 186 7 chrX 125782759 125783050 -36816880 + MER2 DNA MER2_type 1 343 -1 684 314 2 19 chrX 125783143 125783356 -36816574 + MIR SINE MIR 34 244 -18 25 0 0 0 chrX 125785896 125785921 -36814009 + AT_rich Low_complexity Low_complexity 1 25 0 2108 92 0 46 chrX 125786403 125786728 -36813202 + AluY SINE Alu 1 310 -1 447 263 73 67 chrX 125786779 125786958 -36812972 - MIR SINE MIR -73 189 10 * 693 260 26 48 chrX 125786877 125787104 -36812826 + MIR SINE MIR 8 229 -33 869 245 129 39 chrX 125788661 125788947 -36810983 + L2 LINE L2 2999 3310 -3 22 35 0 0 chrX 125788968 125788997 -36810933 + AT_rich Low_complexity Low_complexity 1 29 0 29 104 0 0 chrX 125789067 125789173 -36810757 + AT_rich Low_complexity Low_complexity 1 106 0 245 327 9 53 chrX 125789513 125789626 -36810304 + MIR SINE MIR 73 180 -82 4244 107 33 3 chrX 125789727 125790389 -36809541 + L1MA3 LINE L1 5624 6305 0 1463 217 15 73 chrX 125790435 125790831 -36809099 - MLT1A2 LTR MaLR 0 374 2 234 213 53 53 chrX 125790862 125790937 -36808993 - MIR SINE MIR -1 261 187 910 273 140 0 chrX 125790984 125791248 -36808682 - MLT1J2 LTR MaLR -116 334 34 431 263 224 0 chrX 125791287 125791439 -36808491 - MIR SINE MIR -69 193 8 211 182 0 0 chrX 125791567 125791600 -36808330 + polypurine Low_complexity Low_complexity 3 35 0 23 54 0 0 chrX 125794332 125794369 -36805561 + AT_rich Low_complexity Low_complexity 1 37 0 503 274 97 12 chrX 125795572 125795768 -36804162 - MIR SINE MIR -11 251 41 1739 170 38 0 chrX 125796079 125796244 -36803686 - AluJb SINE Alu -13 299 117 275 0 0 28 chrX 125796244 125796280 -36803650 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 1739 170 38 0 chrX 125796280 125796402 -36803528 - AluJb SINE Alu -195 117 1 21 0 0 0 chrX 125796855 125796876 -36803054 + AT_rich Low_complexity Low_complexity 1 21 0 409 216 114 42 chrX 125796955 125797122 -36802808 + MIR SINE MIR 81 259 -3 1870 138 3 17 chrX 125797619 125797915 -36802015 - AluJo SINE Alu -20 292 1 1355 92 34 5 chrX 125799175 125799381 -36800549 + L1PA10 LINE L1 5941 6152 -16 556 116 231 0 chrX 125800374 125800495 -36799435 + L1MA6 LINE L1 6152 6300 0 892 271 0 28 chrX 125800627 125800911 -36799019 - L1ME2 LINE L1 -27 6137 5862 1326 176 44 13 chrX 125800937 125801315 -36798615 - L1ME2 LINE L1 -668 5498 5107 3962 132 18 10 chrX 125801323 125801998 -36797932 - L1PB4 LINE L1 -1 6155 5476 22094 83 12 7 chrX 125802004 125802673 -36797257 - L1PA7 LINE L1 -13 6141 5477 2125 136 0 3 chrX 125802673 125802975 -36796955 - AluSg SINE Alu -9 301 1 22094 83 12 7 chrX 125802975 125806259 -36793671 - L1PA7 LINE L1 -677 5477 2170 533 105 11 21 chrX 125806244 125806339 -36793591 - L1PB4 LINE L1 -664 5492 5399 * 1789 236 143 11 chrX 125806343 125806971 -36792959 - L1ME2 LINE L1 -1026 5120 4410 21 0 0 0 chrX 125806977 125806998 -36792932 + AT_rich Low_complexity Low_complexity 1 21 0 221 360 81 16 chrX 125807341 125807527 -36792403 + L2 LINE L2 2174 2371 -943 345 24 0 0 chrX 125807528 125807570 -36792360 + (CA)n Simple_repeat Simple_repeat 1 42 0 267 284 81 0 chrX 125807857 125807931 -36791999 + L2 LINE L2 2445 2524 -790 729 330 8 15 chrX 125807933 125808194 -36791736 + MIR SINE MIR 2 260 -2 207 0 0 0 chrX 125808266 125808289 -36791641 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 624 198 0 63 chrX 125808292 125808418 -36791512 - FLAM_C SINE Alu -25 118 1 441 280 48 8 chrX 125808645 125808770 -36791160 - L2 LINE L2 -1 3312 3183 619 302 30 35 chrX 125809412 125809644 -36790286 + MIR SINE MIR 29 259 -3 251 364 43 16 chrX 125809690 125809877 -36790053 + L2 LINE L2 2642 2833 -481 1269 82 0 22 chrX 125810158 125810342 -36789588 + L1PA11 LINE L1 5991 6170 -4 236 260 0 0 chrX 125810480 125810530 -36789400 + (TG)n Simple_repeat Simple_repeat 2 51 0 269 349 20 27 chrX 125810653 125810799 -36789131 - L2 LINE L2 -290 2982 2838 235 292 31 0 chrX 125810854 125810919 -36789011 - MIR SINE MIR 0 262 196 273 210 0 0 chrX 125810922 125810984 -36788946 + (TA)n Simple_repeat Simple_repeat 1 62 0 1848 109 90 0 chrX 125811000 125811266 -36788664 - AluSx SINE Alu -22 290 1 483 267 48 20 chrX 125811280 125811426 -36788504 - MIR SINE MIR -88 174 25 227 329 103 52 chrX 125811452 125811877 -36788053 - L2 LINE L2 -737 2577 2131 2432 74 0 0 chrX 125812996 125813293 -36786637 + AluY SINE Alu 1 297 -14 991 325 46 32 chrX 125813294 125813865 -36786065 - L2 LINE L2 -2 3311 2737 180 276 126 23 chrX 125814581 125814668 -36785262 - MIR SINE MIR -57 205 110 461 300 100 23 chrX 125815366 125815586 -36784344 - MIR SINE MIR -6 256 20 1963 126 17 23 chrX 125815699 125816001 -36783929 - AluSx SINE Alu -12 300 1 505 167 83 0 chrX 125818456 125818564 -36781366 - MER103 DNA DNA -47 119 3 251 329 146 0 chrX 125818585 125818722 -36781208 - MIR SINE MIR -43 219 63 204 282 176 46 chrX 125818730 125818861 -36781069 + MIR SINE MIR 49 196 -66 185 35 69 0 chrX 125819537 125819566 -36780364 + (CATA)n Simple_repeat Simple_repeat 2 32 0 199 286 18 0 chrX 125821318 125821374 -36778556 - L2 LINE L2 0 3313 3257 2462 66 0 3 chrX 125821419 125821723 -36778207 - AluY SINE Alu -8 303 1 260 295 26 0 chrX 125822926 125823004 -36776926 - L3 LINE CR1 -3 1574 1495 261 171 118 66 chrX 125823162 125823238 -36776692 - MER103 DNA DNA -84 82 3 502 326 138 20 chrX 125823303 125823659 -36776271 - L3 LINE CR1 -557 1020 623 683 303 4 38 chrX 125824541 125824779 -36775151 + MIR SINE MIR 21 250 -12 257 351 86 20 chrX 125825543 125825694 -36774236 + MER91A DNA MER1_type 1 161 -35 23 0 0 0 chrX 125827529 125827552 -36772378 + AT_rich Low_complexity Low_complexity 1 23 0 2436 75 3 7 chrX 125827693 125827999 -36771931 - AluSc SINE Alu -4 305 1 268 339 142 59 chrX 125828568 125829041 -36770889 + L2 LINE L2 2578 3114 -158 1719 167 0 30 chrX 125829041 125829341 -36770589 - AluJo SINE Alu -21 291 1 268 339 142 59 chrX 125829341 125829515 -36770415 + L2 LINE L2 3114 3272 0 192 208 21 21 chrX 125830166 125830214 -36769716 - L2 LINE L2 0 3313 3266 616 154 18 9 chrX 125830854 125830964 -36768966 - L1PB4 LINE L1 -7 6149 6039 24 0 0 0 chrX 125831108 125831132 -36768798 + AT_rich Low_complexity Low_complexity 1 24 0 4925 154 33 25 chrX 125831132 125832103 -36767827 - L1MC3 LINE L1 -8 7777 6799 28 48 0 0 chrX 125832387 125832429 -36767501 + AT_rich Low_complexity Low_complexity 1 42 0 295 259 21 81 chrX 125833040 125833276 -36766654 + L1ME4a LINE L1 4324 4545 -1601 22 0 0 0 chrX 125833551 125833573 -36766357 + AT_rich Low_complexity Low_complexity 1 22 0 708 314 22 14 chrX 125834115 125834472 -36765458 + L1ME4a LINE L1 5468 5827 -294 197 322 44 11 chrX 125834777 125834867 -36765063 + L2 LINE L2 1965 2057 -1257 312 263 63 17 chrX 125834992 125835166 -36764764 + MIR SINE MIR 34 262 0 300 276 11 11 chrX 125835369 125835456 -36764474 + L2 LINE L2 3227 3313 0 1452 304 59 49 chrX 125836580 125836725 -36763205 - L2 LINE L2 0 3313 3171 1264 99 21 0 chrX 125836725 125836916 -36763014 + L1MA3 LINE L1 6111 6305 0 1452 304 59 49 chrX 125836916 125837539 -36762391 - L2 LINE L2 -142 3171 2527 2748 165 36 30 chrX 125837539 125838096 -36761834 - L1PB4 LINE L1 -1 6155 5596 1452 304 59 49 chrX 125838096 125838474 -36761456 - L2 LINE L2 -786 2527 2154 458 288 36 0 chrX 125838519 125838630 -36761300 - L2 LINE L2 0 3313 3199 27 0 0 0 chrX 125839053 125839080 -36760850 + AT_rich Low_complexity Low_complexity 1 27 0 278 239 51 18 chrX 125839106 125839252 -36760678 + MIR SINE MIR 66 261 -1 23 33 0 0 chrX 125839459 125839489 -36760441 + AT_rich Low_complexity Low_complexity 1 30 0 447 131 12 60 chrX 125839548 125839632 -36760298 - MER5A DNA MER1_type -101 88 9 707 290 63 48 chrX 125840615 125840867 -36759063 + MIR SINE MIR 2 257 -5 181 307 0 53 chrX 125841243 125841318 -36758612 - MIR SINE MIR -107 155 85 25 31 0 0 chrX 125842489 125842521 -36757409 + AT_rich Low_complexity Low_complexity 1 32 0 202 261 43 72 chrX 125843055 125843193 -36756737 - MIR3 SINE MIR -42 166 33 308 290 186 8 chrX 125843919 125844043 -36755887 + MIR SINE MIR 38 183 -79 594 195 16 8 chrX 125844062 125844185 -36755745 + L1MB8 LINE L1 6021 6144 -34 2244 193 38 54 chrX 125844188 125844742 -36755188 + L1MB7 LINE L1 5629 6173 -11 195 294 88 75 chrX 125844796 125844956 -36754974 - L2 LINE L2 -209 3063 2902 231 146 0 0 chrX 125845267 125845308 -36754622 + (GTATG)n Simple_repeat Simple_repeat 3 43 0 747 11 0 0 chrX 125846980 125847069 -36752861 - L1PA4 LINE L1 -3 6152 6064 576 337 0 32 chrX 125847579 125847769 -36752161 + MIR3 SINE MIR 16 199 -9 25 31 0 0 chrX 125847800 125847832 -36752098 + AT_rich Low_complexity Low_complexity 1 32 0 272 330 70 23 chrX 125848539 125848754 -36751176 + L3 LINE CR1 1067 1291 -286 * 508 223 249 62 chrX 125848751 125849024 -36750906 - L3 LINE CR1 -11 1566 1243 323 275 12 0 chrX 125849024 125849104 -36750826 - MIR SINE MIR -121 141 61 1300 125 28 0 chrX 125849206 125849488 -36750442 + L1PB4 LINE L1 5178 5468 -698 234 0 0 0 chrX 125849488 125849514 -36750416 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1212 189 125 8 chrX 125849518 125849766 -36750164 - AluJo SINE Alu -30 282 6 738 161 77 0 chrX 125849770 125849913 -36750017 + L1PB4 LINE L1 5465 5618 -538 1529 115 0 13 chrX 125849923 125850157 -36749773 - L1PA8 LINE L1 -2 6170 5940 2663 175 35 9 chrX 125850157 125850693 -36749237 + L1PB4 LINE L1 5606 6156 0 234 402 31 26 chrX 125850766 125850995 -36748935 + L2 LINE L2 2830 3059 -213 32 0 0 0 chrX 125853020 125853052 -36746878 + AT_rich Low_complexity Low_complexity 1 32 0 309 274 11 32 chrX 125853062 125853157 -36746773 - MIR3 SINE MIR -5 203 111 759 308 90 21 chrX 125853656 125853991 -36745939 - L3 LINE CR1 -401 1176 819 8004 115 16 48 chrX 125853994 125854822 -36745108 - HSMAR2 DNA Mariner -1 1301 448 1502 85 10 5 chrX 125854822 125855023 -36744907 + AluY SINE Alu 23 224 -87 8004 115 16 48 chrX 125855023 125855384 -36744546 - HSMAR2 DNA Mariner -854 448 157 7616 20 10 5 chrX 125855384 125856334 -36743596 - L1PA4 LINE L1 -2 6153 5200 8004 115 16 48 chrX 125856334 125856487 -36743443 - HSMAR2 DNA Mariner -1145 157 1 815 326 171 5 chrX 125856488 125856933 -36742997 - L3 LINE CR1 -758 819 301 685 296 45 33 chrX 125857477 125857720 -36742210 - MIR SINE MIR -1 261 16 1556 128 55 0 chrX 125857833 125858068 -36741862 - AluSx SINE Alu -62 250 3 231 302 0 0 chrX 125858416 125858469 -36741461 + L2 LINE L2 3220 3272 0 22 0 0 0 chrX 125858685 125858707 -36741223 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chrX 125859159 125859194 -36740736 + AT_rich Low_complexity Low_complexity 1 35 0 415 260 0 10 chrX 125859344 125859440 -36740490 + MIR3 SINE MIR 97 191 -17 284 102 17 51 chrX 125859450 125859491 -36740439 - MLT2D LTR ERVL 0 554 513 288 0 0 0 chrX 125859491 125859523 -36740407 + (TG)n Simple_repeat Simple_repeat 1 32 0 284 102 17 51 chrX 125859523 125859540 -36740390 - MLT2D LTR ERVL -41 513 358 1089 202 153 11 chrX 125859546 125859828 -36740102 - MLT2D LTR ERVL -20 394 73 816 192 26 0 chrX 125859831 125859987 -36739943 - L1MA9 LINE L1 -405 5900 5741 * 1087 215 53 64 chrX 125859985 125860362 -36739568 + L1MA9 LINE L1 5894 6266 -46 505 125 34 0 chrX 125860392 125860480 -36739450 - MLT2D LTR ERVL -323 91 1 937 184 74 14 chrX 125860605 125860691 -36739239 + L1MB8 LINE L1 5948 6027 -151 234 0 0 0 chrX 125860691 125860717 -36739213 + (TG)n Simple_repeat Simple_repeat 1 26 0 937 184 74 14 chrX 125860717 125860847 -36739083 + L1MB8 LINE L1 6027 6177 -1 561 348 85 22 chrX 125860991 125861485 -36738445 - L1MC4a LINE L1 -1907 5901 5377 361 296 47 23 chrX 125861513 125861685 -36738245 - L1MC4a LINE L1 -815 5331 5156 268 289 22 11 chrX 125862208 125862298 -36737632 + CT-rich Low_complexity Low_complexity 3 93 0 219 69 0 0 chrX 125862326 125862355 -36737575 + (TG)n Simple_repeat Simple_repeat 2 30 0 639 319 79 37 chrX 125862563 125863017 -36736913 - MARNA DNA Mariner -66 520 48 346 295 76 0 chrX 125864123 125864228 -36735702 - L2 LINE L2 0 3313 3201 438 266 9 9 chrX 125864379 125864492 -36735438 + MIR SINE MIR 47 159 -103 1387 132 112 12 chrX 125865271 125865513 -36734417 - MSTA LTR MaLR 0 428 163 225 94 0 0 chrX 125865735 125865767 -36734163 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 926 280 8 4 chrX 125865767 125866010 -36733920 + MIR SINE MIR 9 252 -10 305 262 0 4 chrX 125866273 125866397 -36733533 - MIR SINE MIR -50 212 49 799 131 75 12 chrX 125866651 125866811 -36733119 + L1MA9 LINE L1 6135 6304 -8 25 0 0 0 chrX 125866815 125866840 -36733090 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chrX 125867004 125867035 -36732895 + AT_rich Low_complexity Low_complexity 1 31 0 10511 21 5 2 chrX 125867559 125868855 -36731075 - L1PA4 LINE L1 -712 5442 4142 5713 32 0 0 chrX 125868855 125869551 -36730379 + L1PA4 LINE L1 5462 6162 0 3209 202 118 7 chrX 125869740 125870622 -36729308 + L1MB4 LINE L1 5197 6177 -3 629 254 63 68 chrX 125870638 125870890 -36729040 - MIR SINE MIR 0 262 12 634 193 45 59 chrX 125870950 125871152 -36728778 - L1MB8 LINE L1 -31 6147 5949 1075 155 11 6 chrX 125871279 125871453 -36728477 + FAM SINE Alu 1 175 0 498 75 0 0 chrX 125872817 125872884 -36727046 + (CA)n Simple_repeat Simple_repeat 2 68 0 22 35 0 0 chrX 125873815 125873844 -36726086 + AT_rich Low_complexity Low_complexity 1 29 0 303 239 33 76 chrX 125874387 125874410 -36725520 + L1PA15-16 LINE L1 1043 1065 -5784 1556 150 88 28 chrX 125874410 125874763 -36725167 + THE1C LTR MaLR 1 374 -1 303 239 33 76 chrX 125874763 125874831 -36725099 + L1PA15-16 LINE L1 1065 1130 -5719 1747 193 0 13 chrX 125875083 125875399 -36724531 - AluJo SINE Alu 0 312 1 282 153 0 0 chrX 125875468 125875527 -36724403 + T-rich Low_complexity Low_complexity 1 59 0 7832 12 3 0 chrX 125875527 125876658 -36723272 - L1PA2 LINE L1 0 6155 5024 193 200 25 0 chrX 125878095 125878135 -36721795 - L3b LINE CR1 -5 1578 1538 693 201 58 40 chrX 125879350 125879524 -36720406 - MER69A DNA AcHobo 0 177 1 250 317 49 57 chrX 125880618 125880741 -36719189 + MIR SINE MIR 32 153 -55 707 246 62 36 chrX 125881201 125881425 -36718505 - MIR SINE MIR -4 258 29 291 409 9 5 chrX 125881883 125882096 -36717834 + L3 LINE CR1 1155 1368 -209 230 299 161 15 chrX 125882602 125882739 -36717191 + MIR SINE MIR 106 262 0 412 296 44 2 chrX 125885560 125885708 -36714222 + MIR SINE MIR 35 190 -58 184 333 35 35 chrX 125886330 125886417 -36713513 - L2 LINE L2 -10 3262 3176 408 309 60 12 chrX 125886563 125886731 -36713199 - MER20B DNA MER1_type -607 176 1 2258 108 0 0 chrX 125887235 125887531 -36712399 + AluSq SINE Alu 1 296 -17 191 326 0 0 chrX 125887559 125887605 -36712325 - L2 LINE L2 -674 2640 2595 764 83 16 16 chrX 125888088 125888209 -36711721 + L1PA11 LINE L1 6052 6172 -2 25 40 0 20 chrX 125888380 125888414 -36711516 + AT_rich Low_complexity Low_complexity 1 35 -14 1874 137 63 3 chrX 125888414 125888749 -36711181 + L1PA16 LINE L1 5812 6166 0 25 40 0 20 chrX 125888749 125888764 -36711166 + AT_rich Low_complexity Low_complexity 35 49 0 358 310 8 47 chrX 125890117 125890246 -36709684 + MIR SINE MIR 20 143 -119 2084 110 23 0 chrX 125891010 125891319 -36708611 - L1PA13 LINE L1 -3 6160 5845 676 342 75 16 chrX 125891476 125891915 -36708015 - L1MC/D LINE L1 -2043 5765 5301 1258 64 0 0 chrX 125891945 125892102 -36707828 + AluSc SINE Alu 153 309 0 2188 279 61 53 chrX 125892190 125893900 -36706030 - L1MC/D LINE L1 -1549 4597 2873 5173 125 15 0 chrX 125894944 125895300 -36704630 - L1PB4 LINE L1 -3 6153 5804 353 75 19 0 chrX 125895300 125895353 -36704577 + (TG)n Simple_repeat Simple_repeat 2 55 0 5173 125 15 0 chrX 125895353 125895911 -36704019 - L1PB4 LINE L1 -352 5804 5203 1775 134 68 44 chrX 125896247 125896613 -36703317 - THE1C LTR MaLR 0 375 1 233 162 0 0 chrX 125897634 125897671 -36702259 + L2 LINE L2 3277 3313 0 1462 215 30 24 chrX 125897795 125898134 -36701796 + MER58B DNA MER1_type 1 341 0 27 0 0 0 chrX 125899157 125899184 -36700746 + AT_rich Low_complexity Low_complexity 1 27 0 745 291 57 54 chrX 125899332 125899683 -36700247 - L2 LINE L2 0 3313 2962 233 167 21 0 chrX 125899819 125899867 -36700063 + (TTA)n Simple_repeat Simple_repeat 3 51 0 321 240 16 85 chrX 125899916 125900045 -36699885 - MIR SINE MIR -97 165 46 47 33 0 0 chrX 125900316 125900377 -36699553 + AT_rich Low_complexity Low_complexity 1 61 0 21 57 0 0 chrX 125901133 125901168 -36698762 + AT_rich Low_complexity Low_complexity 1 35 0 8573 90 4 2 chrX 125901662 125901680 -36698250 - L1P LINE L1 -841 5305 5289 5088 65 6 0 chrX 125901680 125902347 -36697583 - L1PA7 LINE L1 -6 6148 5478 8573 90 4 2 chrX 125902347 125903524 -36696406 - L1P LINE L1 -857 5289 4108 291 382 30 15 chrX 125903813 125903944 -36695986 - MIR3 SINE MIR -50 158 26 352 209 181 0 chrX 125904395 125904500 -36695430 + MER53 DNA DNA 1 124 -65 24 67 0 0 chrX 125905138 125905183 -36694747 + AT_rich Low_complexity Low_complexity 1 45 0 201 217 0 43 chrX 125905470 125905516 -36694414 - MIR SINE MIR -111 151 108 182 261 0 62 chrX 125906534 125906599 -36693331 - MIR SINE MIR -123 139 79 22792 129 12 17 chrX 125907341 125908875 -36691055 - L1PA8 LINE L1 -1 6486 4946 2390 67 0 0 chrX 125908875 125909172 -36690758 - AluY SINE Alu -14 297 1 22792 129 12 17 chrX 125909172 125914110 -36685820 - L1PA8 LINE L1 -1541 4946 10 333 0 0 0 chrX 125914260 125914297 -36685633 + (CA)n Simple_repeat Simple_repeat 2 38 0 617 215 40 13 chrX 125914322 125914471 -36685459 - MER103 DNA DNA -13 153 1 384 22 0 0 chrX 125914474 125914519 -36685411 + (TG)n Simple_repeat Simple_repeat 2 46 0 195 339 0 0 chrX 125914710 125914769 -36685161 + MIR SINE MIR 50 108 -100 282 257 132 16 chrX 125914913 125915106 -36684824 + L1MC4 LINE L1 7709 8042 0 787 266 11 0 chrX 125915375 125915559 -36684371 + MER5A DNA MER1_type 2 187 -2 449 291 50 64 chrX 125917489 125917630 -36682300 - L2 LINE L2 0 3272 3134 432 0 0 0 chrX 125917731 125917779 -36682151 + (TG)n Simple_repeat Simple_repeat 1 48 0 333 0 0 0 chrX 125917815 125917852 -36682078 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 149 0 0 chrX 125917922 125917969 -36681961 - MLT1J2 LTR MaLR -30 420 374 376 255 0 21 chrX 125918238 125918332 -36681598 - MIR3 SINE MIR -6 202 111 405 277 103 24 chrX 125920615 125920868 -36679062 + MARNA DNA Mariner 207 479 -107 555 286 50 15 chrX 125920992 125921191 -36678739 + MIR SINE MIR 56 261 -1 205 370 55 71 chrX 125922645 125922956 -36676974 + L2 LINE L2 2942 3247 -25 225 0 0 0 chrX 125923130 125923155 -36676775 + (TG)n Simple_repeat Simple_repeat 1 25 0 1269 321 84 29 chrX 125924282 125925215 -36674715 - L2 LINE L2 0 3313 2331 293 260 104 26 chrX 125925213 125925290 -36674640 + MIR3 SINE MIR 99 181 -27 * 251 242 65 0 chrX 125925292 125925354 -36674576 - MER58 DNA MER1_type 0 2420 2355 198 0 0 0 chrX 125925466 125925488 -36674442 + (A)n Simple_repeat Simple_repeat 1 22 0 324 83 0 0 chrX 125925842 125925890 -36674040 + (TG)n Simple_repeat Simple_repeat 1 48 0 22 35 0 0 chrX 125925913 125925942 -36673988 + AT_rich Low_complexity Low_complexity 1 29 0 3866 144 27 8 chrX 125926726 125927365 -36672565 - MER39B LTR ERV1 -2 651 1 374 79 16 0 chrX 125928160 125928223 -36671707 + (TC)n Simple_repeat Simple_repeat 1 64 0 199 256 85 61 chrX 125928715 125928797 -36671133 + L2 LINE L2 3230 3313 0 199 319 0 29 chrX 125929829 125929898 -36670032 - L2 LINE L2 -2 3311 3245 4179 246 79 22 chrX 125930013 125931465 -36668465 - L1M4 LINE L1 -1329 4817 3283 378 0 0 0 chrX 125931961 125932003 -36667927 + (CA)n Simple_repeat Simple_repeat 1 42 0 382 296 36 20 chrX 125932165 125932412 -36667518 - L1ME4a LINE L1 -237 5884 5634 2188 104 0 0 chrX 125932765 125933072 -36666858 + AluSx SINE Alu 3 309 0 22 0 0 0 chrX 125933504 125933526 -36666404 + AT_rich Low_complexity Low_complexity 1 22 0 2021 131 24 3 chrX 125935792 125936090 -36663840 + AluSx SINE Alu 3 306 -6 245 273 0 68 chrX 125936285 125936373 -36663557 + MIR SINE MIR 72 153 -109 216 219 192 14 chrX 125936667 125936740 -36663190 - MIR SINE MIR -59 203 118 198 71 0 0 chrX 125937406 125937434 -36662496 + (T)n Simple_repeat Simple_repeat 1 28 0 839 10 0 0 chrX 125937735 125937833 -36662097 - L1HS LINE L1 0 6155 6058 418 304 82 7 chrX 125938407 125938542 -36661388 + MIR3 SINE MIR 3 147 -61 390 225 130 14 chrX 125938779 125938917 -36661013 - L1ME4a LINE L1 -4 6117 5964 42 77 0 0 chrX 125939034 125939125 -36660805 + AT_rich Low_complexity Low_complexity 1 91 0 22 56 0 0 chrX 125939167 125939203 -36660727 + AT_rich Low_complexity Low_complexity 1 36 0 490 185 11 0 chrX 125939262 125939354 -36660576 + Tigger5 DNA MER2_type 2231 2323 0 834 168 0 0 chrX 125939484 125939615 -36660315 - FLAM_C SINE Alu -2 131 1 976 235 37 46 chrX 125939616 125940076 -36659854 - L1MC5 LINE L1 -174 7787 7332 645 144 199 0 chrX 125940082 125940263 -36659667 - Charlie5 DNA MER1_type 0 2620 2404 248 296 49 37 chrX 125940410 125940572 -36659358 + L1M4b LINE L1 91 254 -6605 1823 264 38 17 chrX 125941112 125941681 -36658249 + L1M4b LINE L1 1203 1758 -5097 504 0 0 0 chrX 125941681 125941737 -36658193 + (TC)n Simple_repeat Simple_repeat 1 56 0 261 0 0 0 chrX 125941736 125941765 -36658165 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 1823 264 38 17 chrX 125941737 125941857 -36658073 + L1M4b LINE L1 1758 1878 -4977 1524 193 26 26 chrX 125941875 125942258 -36657672 + L1MB8 LINE L1 5796 6178 0 300 274 94 19 chrX 125942560 125942666 -36657264 - MIR3 SINE MIR -93 115 2 810 215 105 5 chrX 125943305 125943505 -36656425 + MIR SINE MIR 6 225 -37 33 85 0 0 chrX 125943522 125943604 -36656326 + AT_rich Low_complexity Low_complexity 1 82 0 24 0 0 0 chrX 125944792 125944816 -36655114 + AT_rich Low_complexity Low_complexity 1 24 0 1122 213 23 0 chrX 125945362 125945583 -36654347 + MSTD LTR MaLR 1 226 -170 2384 57 63 3 chrX 125945612 125945928 -36654002 - L1PA7 LINE L1 -9 6145 5811 5185 79 12 1 chrX 125945928 125946646 -36653284 + L1P LINE L1 4273 4998 -1148 854 220 23 0 chrX 125946646 125946819 -36653111 + MSTD LTR MaLR 218 394 -2 2154 116 0 0 chrX 125947458 125947752 -36652178 - AluSg SINE Alu -16 294 1 367 268 141 52 chrX 125947783 125948242 -36651688 + L1ME LINE L1 5313 5823 -298 5710 30 0 0 chrX 125948406 125949074 -36650856 - L1PA5 LINE L1 0 6154 5487 216 304 0 0 chrX 125949666 125949722 -36650208 + GA-rich Low_complexity Low_complexity 3 58 0 363 291 43 26 chrX 125949799 125949916 -36650014 - MIR3 SINE MIR -3 205 87 976 262 23 12 chrX 125949938 125950194 -36649736 + MIR SINE MIR 2 260 -2 195 42 0 0 chrX 125951199 125951223 -36648707 + (TC)n Simple_repeat Simple_repeat 1 24 0 30 45 0 0 chrX 125951501 125951545 -36648385 + AT_rich Low_complexity Low_complexity 1 44 0 233 319 170 31 chrX 125951831 125952307 -36647623 - L2 LINE L2 -618 2696 2155 642 231 14 81 chrX 125952791 125953012 -36646918 - L2 LINE L2 0 3313 3108 2628 17 0 0 chrX 125953020 125953309 -36646621 - AluY SINE Alu -7 304 16 340 286 33 0 chrX 125953334 125953425 -36646505 - L2 LINE L2 -372 2942 2849 1885 260 64 21 chrX 125953434 125953968 -36645962 - L2 LINE L2 -575 2739 2183 180 111 0 0 chrX 125953990 125954017 -36645913 + (TATATG)n Simple_repeat Simple_repeat 6 32 0 2323 57 0 7 chrX 125954326 125954609 -36645321 + AluY SINE Alu 1 281 -30 234 0 0 0 chrX 125954611 125954637 -36645293 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 2117 108 0 0 chrX 125956840 125957165 -36642765 - AluSg SINE Alu 0 327 3 829 237 40 0 chrX 125957234 125957411 -36642519 + MER5A DNA MER1_type 6 189 0 205 358 164 31 chrX 125957438 125957852 -36642078 + L2 LINE L2 2200 2668 -646 2134 122 0 7 chrX 125958041 125958345 -36641585 - AluSx SINE Alu -10 302 1 260 331 160 68 chrX 125959169 125959537 -36640393 - L2 LINE L2 -5 3267 2866 1034 283 66 46 chrX 125959697 125960244 -36639686 - L2 LINE L2 -627 2687 2130 225 250 0 21 chrX 125960702 125960750 -36639180 - L2 LINE L2 -15 3257 3211 224 266 62 0 chrX 125960759 125960823 -36639107 + MIR SINE MIR 74 141 -121 664 238 76 33 chrX 125960883 125961093 -36638837 - MIR SINE MIR -43 219 1 2147 124 17 0 chrX 125962104 125962403 -36637527 - AluSx SINE Alu -8 304 1 471 63 0 0 chrX 125962459 125962522 -36637408 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 237 239 0 0 chrX 125962544 125962590 -36637340 - MIR SINE MIR -7 255 210 601 290 22 11 chrX 125963164 125963347 -36636583 - MER117 DNA MER1_type -2 195 11 222 374 75 9 chrX 125963368 125963475 -36636455 - L2 LINE L2 -38 3234 3121 887 249 10 0 chrX 125963628 125963829 -36636101 - MIR SINE MIR -50 212 10 336 83 0 0 chrX 125963872 125963920 -36636010 + (TG)n Simple_repeat Simple_repeat 2 49 0 575 167 5 18 chrX 125963934 125964069 -36635861 + L1 LINE L1 4523 4658 -1488 660 220 58 35 chrX 125964329 125964502 -36635428 + MER5B DNA MER1_type 2 178 0 289 266 62 26 chrX 125964915 125965028 -36634902 - MIR SINE MIR 0 262 146 330 26 0 0 chrX 125967330 125967369 -36632561 + (CA)n Simple_repeat Simple_repeat 1 39 0 292 313 0 0 chrX 125967874 125967941 -36631989 + L2 LINE L2 3247 3313 0 315 0 0 0 chrX 125968030 125968065 -36631865 + (TA)n Simple_repeat Simple_repeat 2 36 0 268 254 17 0 chrX 125969520 125969579 -36630351 + L2 LINE L2 3213 3272 0 306 200 328 8 chrX 125970214 125970339 -36629591 + L2 LINE L2 3127 3291 -22 2102 94 0 4 chrX 125970869 125971161 -36628769 + AluSq SINE Alu 19 309 0 486 298 156 15 chrX 125972130 125972335 -36627595 - MIR SINE MIR -28 234 1 1743 262 81 8 chrX 125972997 125973516 -36626414 + L2 LINE L2 1881 2437 -877 468 325 21 11 chrX 125973778 125973969 -36625961 + LTR16C LTR ERVL 299 491 0 1561 265 144 33 chrX 125973969 125974683 -36625247 + L2 LINE L2 2343 3137 -176 694 183 8 8 chrX 125974683 125974814 -36625116 + MER94 DNA DNA 4 134 0 1561 265 144 33 chrX 125974814 125974860 -36625070 + L2 LINE L2 3137 3177 -136 204 253 0 25 chrX 125974860 125974939 -36624991 + (TA)n Simple_repeat Simple_repeat 1 77 0 428 291 40 7 chrX 125974939 125975090 -36624840 + L2 LINE L2 3149 3304 -9 200 224 0 106 chrX 125977375 125977460 -36622470 - L2 LINE L2 -660 2654 2579 2291 126 31 25 chrX 125977586 125977943 -36621987 + THE1B LTR MaLR 6 364 0 783 314 89 45 chrX 125977971 125978666 -36621264 - L2 LINE L2 -884 2430 1705 196 324 34 54 chrX 125978798 125978946 -36620984 - L2 LINE L2 -1654 1660 1516 428 268 60 127 chrX 125979118 125979600 -36620330 - MLT1K LTR MaLR 0 588 139 1092 304 63 11 chrX 125979625 125980126 -36619804 - L2 LINE L2 -6 3307 2770 2272 112 3 0 chrX 125982636 125982940 -36616990 - AluSq SINE Alu -8 305 1 1122 339 105 18 chrX 125983106 125983994 -36615936 - L2 LINE L2 -26 3246 2276 543 327 118 44 chrX 125984062 125984359 -36615571 - L2 LINE L2 -1 3271 2953 315 216 144 10 chrX 125984469 125984566 -36615364 - MIR3 SINE MIR -7 201 92 227 235 235 47 chrX 125985431 125985601 -36614329 + L1MC/D LINE L1 5698 5899 -1909 23 0 0 0 chrX 125986802 125986825 -36613105 + AT_rich Low_complexity Low_complexity 1 23 0 235 330 11 11 chrX 125987027 125987115 -36612815 + L2 LINE L2 2967 3054 -218 209 252 55 110 chrX 125987229 125987356 -36612574 + L2 LINE L2 3178 3297 -16 339 85 0 0 chrX 125987790 125987837 -36612093 + (TG)n Simple_repeat Simple_repeat 1 47 0 196 322 34 68 chrX 125990291 125990409 -36609521 - L2 LINE L2 -7 3306 3193 224 30 30 0 chrX 125990643 125990676 -36609254 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 376 206 0 0 chrX 125991089 125991162 -36608768 - U13 snRNA snRNA -2 102 30 477 236 203 14 chrX 125991937 125992085 -36607845 + MER5B DNA MER1_type 3 178 0 275 264 36 55 chrX 125992492 125992602 -36607328 + MIR SINE MIR 84 191 -71 534 247 128 41 chrX 125993057 125993276 -36606654 - L2 LINE L2 0 3313 3076 559 341 22 31 chrX 125993284 125993510 -36606420 - MIR SINE MIR -19 243 20 192 297 99 22 chrX 125993483 125993574 -36606356 + MIR SINE MIR 44 141 -121 * 916 266 22 68 chrX 125993648 125993926 -36606004 + MER102b DNA MER1_type 74 338 -3 2343 183 29 48 chrX 125995683 125996198 -36603732 - MLT1D LTR MaLR 0 505 1 338 326 23 29 chrX 125996325 125996500 -36603430 + L1M4 LINE L1 2231 2404 -3742 475 309 44 44 chrX 125996687 125997004 -36602926 + L1M4 LINE L1 2669 2985 -3161 27 49 0 0 chrX 125997056 125997097 -36602833 + AT_rich Low_complexity Low_complexity 1 41 0 665 337 49 11 chrX 125997323 125997688 -36602242 + HAL1b LINE L1 297 675 -673 1205 153 15 0 chrX 125997752 125997955 -36601975 - MER33 DNA MER1_type -117 207 2 349 283 35 29 chrX 125998100 125998273 -36601657 + L1ME4a LINE L1 5716 5889 -232 21 0 0 0 chrX 125998691 125998712 -36601218 + AT_rich Low_complexity Low_complexity 1 21 0 591 328 99 16 chrX 125998933 125999430 -36600500 + L1MC4a LINE L1 5373 5910 -1898 416 262 81 32 chrX 126000209 126000399 -36599531 - L1ME3A LINE L1 -213 5949 5745 420 237 96 51 chrX 126000876 126001032 -36598898 + MIR SINE MIR 94 256 -6 2197 114 0 0 chrX 126001225 126001522 -36598408 + AluSx SINE Alu 1 297 -15 389 307 67 107 chrX 126002312 126002732 -36597198 - MLT1K LTR MaLR 0 588 187 1394 179 52 123 chrX 126002732 126003112 -36596818 - MSTD LTR MaLR -2 394 45 1487 199 0 18 chrX 126003112 126003394 -36596536 + AluJo SINE Alu 21 297 -15 1394 179 52 123 chrX 126003394 126003437 -36596493 - MSTD LTR MaLR -351 45 1 389 307 67 107 chrX 126003437 126003482 -36596448 - MLT1K LTR MaLR -401 187 142 237 214 0 54 chrX 126003450 126003506 -36596424 - MLT1K LTR MaLR -346 242 190 * 821 295 180 44 chrX 126004062 126004167 -36595763 - L2 LINE L2 -8 3264 3175 2198 125 0 0 chrX 126004167 126004462 -36595468 - AluSx SINE Alu -17 295 1 821 295 180 44 chrX 126004462 126005227 -36594703 - L2 LINE L2 -97 3175 2272 569 303 38 24 chrX 126005621 126005832 -36594098 + MIR SINE MIR 49 262 0 23 54 0 0 chrX 126006750 126006787 -36593143 + AT_rich Low_complexity Low_complexity 1 37 0 214 274 16 0 chrX 126007222 126007284 -36592646 + CT-rich Low_complexity Low_complexity 1 63 0 594 206 16 40 chrX 126007649 126007775 -36592155 + L2 LINE L2 3187 3309 -4 519 343 40 51 chrX 126007938 126008434 -36591496 + L2 LINE L2 2772 3266 -6 2000 144 0 7 chrX 126008489 126008787 -36591143 + AluJb SINE Alu 1 296 -16 521 261 62 62 chrX 126010444 126010546 -36589384 + MIR SINE MIR 51 155 -107 2291 98 0 0 chrX 126010546 126010843 -36589087 + AluSq SINE Alu 1 297 -16 521 261 62 62 chrX 126010843 126010935 -36588995 + MIR SINE MIR 154 245 -17 3647 68 16 10 chrX 126011058 126011545 -36588385 + L1PA8 LINE L1 5683 6172 0 2063 232 28 30 chrX 126012614 126013191 -36586739 - L1ME1 LINE L1 -5 6161 5586 429 211 0 0 chrX 126013210 126013305 -36586625 + L1MEc LINE L1 642 736 -5660 2270 134 0 42 chrX 126013322 126013703 -36586227 + MER47A DNA MER2_type 1 365 -1 2310 238 48 14 chrX 126013714 126014272 -36585658 - L1MEc LINE L1 -5788 608 32 258 105 0 0 chrX 126014368 126014406 -36585524 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1223 186 99 8 chrX 126014411 126014663 -36585267 - AluJb SINE Alu -37 275 1 228 67 0 0 chrX 126015620 126015650 -36584280 + (CA)n Simple_repeat Simple_repeat 2 31 0 339 285 29 51 chrX 126017547 126017684 -36582246 - MIR3 SINE MIR -6 202 69 1482 150 0 17 chrX 126017989 126018229 -36581701 + AluJb SINE Alu 64 299 -13 23 0 0 0 chrX 126018383 126018406 -36581524 + AT_rich Low_complexity Low_complexity 1 23 0 2329 119 0 0 chrX 126018613 126018925 -36581005 + AluSq SINE Alu 1 312 -1 3047 234 32 18 chrX 126019139 126019972 -36579958 - L1ME1 LINE L1 -5 6161 5317 1797 66 0 0 chrX 126019984 126020212 -36579718 + L1P4 LINE L1 5558 5785 -376 1583 167 4 4 chrX 126020217 126020462 -36579468 + AluJb SINE Alu 6 250 -62 967 157 10 83 chrX 126021408 126021612 -36578318 + MER5A DNA MER1_type 1 189 0 283 308 108 15 chrX 126022627 126022757 -36577173 + MIR3 SINE MIR 65 206 -2 812 145 13 19 chrX 126025104 126025263 -36574667 + L1MB7 LINE L1 6024 6181 -3 269 262 29 48 chrX 126026247 126026350 -36573580 - MIR SINE MIR -46 216 116 359 277 59 10 chrX 126027724 126027825 -36572105 + L2 LINE L2 3189 3294 -19 5850 123 53 16 chrX 126027991 126028034 -36571896 - L1MA3 LINE L1 -10 6295 6255 2027 108 7 0 chrX 126028034 126028303 -36571627 - AluSc SINE Alu -15 294 24 5850 123 53 16 chrX 126028303 126029303 -36570627 - L1MA3 LINE L1 -50 6255 5214 22 56 0 0 chrX 126029582 126029618 -36570312 + AT_rich Low_complexity Low_complexity 1 36 0 386 325 32 24 chrX 126029648 126029774 -36570156 - L2 LINE L2 -9 3263 3137 1271 141 0 0 chrX 126029867 126030073 -36569857 + L1MA2 LINE L1 6093 6298 -6 628 293 57 20 chrX 126030710 126030956 -36568974 + MIR SINE MIR 4 258 -4 211 204 0 0 chrX 126031711 126031755 -36568175 + T-rich Low_complexity Low_complexity 1 44 0 1126 292 71 17 chrX 126032380 126032956 -36566974 - L1MC4a LINE L1 -1944 5864 5258 180 0 0 0 chrX 126032956 126032976 -36566954 + (A)n Simple_repeat Simple_repeat 1 20 0 297 0 0 0 chrX 126033123 126033156 -36566774 + (TC)n Simple_repeat Simple_repeat 2 34 0 276 30 0 0 chrX 126033155 126033188 -36566742 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 244 239 34 11 chrX 126033260 126033348 -36566582 + (TA)n Simple_repeat Simple_repeat 2 91 0 25 65 0 0 chrX 126033948 126033994 -36565936 + AT_rich Low_complexity Low_complexity 1 46 0 354 275 132 39 chrX 126034141 126034527 -36565403 - L1ME4a LINE L1 -240 5881 5460 2158 142 6 17 chrX 126034547 126034899 -36565031 + MER7A DNA MER2_type 1 346 0 9283 202 34 10 chrX 126034938 126036697 -36563233 + L1 LINE L1 13 1813 -5036 1637 155 35 9 chrX 126036704 126037020 -36562910 + L1 LINE L1 5105 5428 -1420 * 11272 184 24 21 chrX 126037017 126037677 -36562253 + L1MA4A LINE L1 2336 2993 -3153 2022 148 0 0 chrX 126037677 126038007 -36561923 + AluSx SINE Alu 2 331 0 11272 184 24 21 chrX 126038007 126039845 -36560085 + L1MA4A LINE L1 2993 4841 -1305 5349 130 23 1 chrX 126039845 126040715 -36559215 + L1MA4A LINE L1 5407 6297 -6 1986 161 107 3 chrX 126040951 126041335 -36558595 - MSTB LTR MaLR 0 426 3 2591 143 14 14 chrX 126041568 126042001 -36557929 + Tigger2a DNA MER2_type 2 434 0 25 0 0 0 chrX 126042580 126042605 -36557325 + AT_rich Low_complexity Low_complexity 1 25 0 326 322 0 0 chrX 126043230 126043351 -36556579 + L1P LINE L1 3716 3836 -2310 549 265 94 29 chrX 126043441 126043686 -36556244 - MIR SINE MIR -1 261 1 1488 177 30 23 chrX 126043811 126044111 -36555819 - AluJo SINE Alu -10 302 1 1008 335 96 41 chrX 126044111 126045158 -36554772 + L1MC/D LINE L1 4051 5161 -985 180 111 0 0 chrX 126045158 126045185 -36554745 + (TA)n Simple_repeat Simple_repeat 2 28 0 1008 335 96 41 chrX 126045185 126045216 -36554714 + L1MC/D LINE L1 5161 5189 -957 1142 271 81 40 chrX 126045217 126045760 -36554170 + L1MC/D LINE L1 5260 5824 -1984 735 235 29 42 chrX 126046057 126046295 -36553635 + MER112 DNA MER1_type 14 248 -12 26 50 0 0 chrX 126046513 126046553 -36553377 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chrX 126046651 126046692 -36553238 + AT_rich Low_complexity Low_complexity 1 41 0 2682 262 79 48 chrX 126047550 126047654 -36552276 + L2 LINE L2 2001 2100 -1213 2304 78 0 0 chrX 126047654 126047937 -36551993 - AluSc SINE Alu -10 299 17 2682 262 79 48 chrX 126047937 126048490 -36551440 + L2 LINE L2 2100 2635 -678 1773 169 11 22 chrX 126048490 126048850 -36551080 + L1MA6 LINE L1 5943 6298 -2 2682 262 79 48 chrX 126048850 126049473 -36550457 + L2 LINE L2 2635 3313 0 20696 155 24 12 chrX 126049576 126050457 -36549473 - L1MA1 LINE L1 0 7721 6852 2142 112 0 26 chrX 126050457 126050762 -36549168 - AluSx SINE Alu -15 297 1 20696 155 24 12 chrX 126050762 126057509 -36542421 - L1MA1 LINE L1 -869 6852 11 180 0 0 0 chrX 126057880 126057900 -36542030 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 207 69 0 0 chrX 126058418 126058447 -36541483 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2307 98 0 3 chrX 126060135 126060442 -36539488 - AluSg SINE Alu -4 306 1 232 389 8 90 chrX 126061545 126061789 -36538141 - L2 LINE L2 -56 3216 2993 1954 190 32 7 chrX 126061935 126062377 -36537553 - L1MB8 LINE L1 0 6178 5726 666 223 18 36 chrX 126062614 126062780 -36537150 + MER112 DNA MER1_type 1 163 -97 212 254 17 0 chrX 126062780 126062839 -36537091 + (CCTAT)n Simple_repeat Simple_repeat 1 60 0 2342 90 18 0 chrX 126065198 126065531 -36534399 - L1PB1 LINE L1 -1 6150 5812 359 364 69 22 chrX 126065882 126066343 -36533587 + L2 LINE L2 1177 1659 -1655 793 281 66 44 chrX 126066369 126066689 -36533241 + L2 LINE L2 2986 3312 -1 189 352 102 0 chrX 126066681 126066789 -36533141 + L2 LINE L2 1834 1952 -1362 * 552 371 97 16 chrX 126066856 126067411 -36532519 + L2 LINE L2 2069 2668 -646 231 375 46 86 chrX 126067587 126067867 -36532063 + L2 LINE L2 2897 3165 -107 372 328 122 16 chrX 126069595 126069784 -36530146 + MIR SINE MIR 40 248 -14 1734 211 113 87 chrX 126069910 126070488 -36529442 - MLT1E LTR MaLR 0 593 1 496 227 20 27 chrX 126070984 126071134 -36528796 - L1MB8 LINE L1 -370 5751 5603 524 255 7 7 chrX 126072487 126072628 -36527302 - MER103 DNA DNA -14 152 12 251 314 12 12 chrX 126073775 126073861 -36526069 + L2 LINE L2 2906 2991 -281 644 221 156 0 chrX 126074276 126074430 -36525500 + MER5A DNA MER1_type 9 186 -3 21 36 0 0 chrX 126074589 126074617 -36525313 + AT_rich Low_complexity Low_complexity 1 28 0 553 299 11 16 chrX 126074655 126074842 -36525088 - MER5A DNA MER1_type 0 189 4 1649 206 19 25 chrX 126076869 126077234 -36522696 + MLT1A2 LTR MaLR 1 363 -11 258 318 0 0 chrX 126077446 126077512 -36522418 - L2 LINE L2 0 3313 3248 21 0 0 0 chrX 126078065 126078086 -36521844 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 126078825 126078866 -36521064 + AT_rich Low_complexity Low_complexity 1 41 0 281 309 105 13 chrX 126079636 126079784 -36520146 - MIR SINE MIR -64 144 4 545 331 83 0 chrX 126080594 126080836 -36519094 - L1ME LINE L1 -358 5812 5551 327 239 0 0 chrX 126080839 126080927 -36519003 + (TA)n Simple_repeat Simple_repeat 1 88 0 189 74 0 0 chrX 126080926 126080953 -36518977 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 384 245 98 48 chrX 126080964 126081269 -36518661 - L1ME LINE L1 -649 5513 5191 2162 130 0 0 chrX 126082316 126082623 -36517307 + AluSq SINE Alu 1 307 -6 372 295 66 16 chrX 126082908 126083030 -36516900 + MIR3 SINE MIR 81 208 0 21 71 0 0 chrX 126084183 126084225 -36515705 + AT_rich Low_complexity Low_complexity 1 42 0 579 335 63 16 chrX 126084485 126084917 -36515013 - L2 LINE L2 -250 3022 2569 2007 96 66 134 chrX 126085001 126085238 -36514692 - LTR23 LTR ERV1 0 437 246 1962 112 14 4 chrX 126085238 126085516 -36514414 + AluSq SINE Alu 7 287 -26 2007 96 66 134 chrX 126085516 126085747 -36514183 - LTR23 LTR ERV1 -191 246 1 191 224 30 75 chrX 126085747 126085814 -36514116 + MIR SINE MIR 61 124 -138 210 310 0 0 chrX 126086254 126086312 -36513618 - MIR3 SINE MIR 0 208 151 780 274 39 63 chrX 126086769 126086830 -36513100 - MIR SINE MIR 0 262 201 1758 152 18 0 chrX 126086830 126087113 -36512817 + AluJb SINE Alu 1 288 -24 780 274 39 63 chrX 126087113 126087306 -36512624 - MIR SINE MIR -61 201 14 212 29 0 59 chrX 126090867 126090901 -36509029 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 2381 83 0 0 chrX 126092358 126092658 -36507272 + AluSg SINE Alu 3 302 -8 1058 274 100 51 chrX 126092906 126093281 -36506649 - L1ME4a LINE L1 -2 6119 5699 1814 170 3 0 chrX 126093281 126093575 -36506355 - AluJb SINE Alu -15 297 3 1058 274 100 51 chrX 126093575 126093830 -36506100 - L1ME4a LINE L1 -422 5699 5458 1887 119 39 39 chrX 126094240 126094550 -36505380 + AluSx SINE Alu 1 310 -2 405 300 53 27 chrX 126094970 126095120 -36504810 + MIR SINE MIR 13 166 -96 22 0 0 0 chrX 126095531 126095553 -36504377 + AT_rich Low_complexity Low_complexity 1 22 0 426 281 66 6 chrX 126095640 126095807 -36504123 + L1ME4a LINE L1 5747 5923 -198 193 250 0 42 chrX 126097260 126097308 -36502622 + MIR SINE MIR 196 241 -21 375 274 144 0 chrX 126097578 126097724 -36502206 - MLT1J LTR MaLR -344 167 1 444 303 73 34 chrX 126098852 126099030 -36500900 + MIR3 SINE MIR 21 205 -3 250 288 0 0 chrX 126099170 126099229 -36500701 + L3 LINE CR1 1516 1574 -3 1806 146 29 23 chrX 126099610 126099918 -36500012 + AluSx SINE Alu 1 310 -2 193 283 196 0 chrX 126100222 126100336 -36499594 + MIR SINE MIR 32 146 -62 503 245 38 0 chrX 126101313 126101419 -36498511 + L2 LINE L2 3158 3267 -5 248 242 106 0 chrX 126101458 126101524 -36498406 - MIR SINE MIR -31 231 159 589 290 35 10 chrX 126101983 126102183 -36497747 + MIR SINE MIR 3 207 -55 3834 59 0 0 chrX 126102327 126102802 -36497128 + L1PA7 LINE L1 5667 6141 -13 21 0 0 0 chrX 126102802 126102823 -36497107 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chrX 126102864 126102888 -36497042 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 204 200 0 0 chrX 126103341 126103391 -36496539 + (CATA)n Simple_repeat Simple_repeat 3 52 0 21 0 0 0 chrX 126103874 126103895 -36496035 + AT_rich Low_complexity Low_complexity 1 21 0 453 243 99 17 chrX 126104966 126105147 -36494783 - LTR33A LTR ERVL -2 521 326 555 283 164 9 chrX 126105379 126105605 -36494325 - MIR SINE MIR 0 262 2 361 189 14 0 chrX 126105820 126105894 -36494036 - MER116 DNA Mariner -5 75 1 993 265 59 45 chrX 126106019 126106700 -36493230 - L1MC4a LINE L1 -832 5314 5192 8662 175 73 13 chrX 126107410 126109644 -36490286 - L1MA8 LINE L1 0 7710 5610 1361 169 113 54 chrX 126109644 126109824 -36490106 + THE1C LTR MaLR 1 169 -206 324 0 0 0 chrX 126109824 126109860 -36490070 + (TC)n Simple_repeat Simple_repeat 1 36 0 1361 169 113 54 chrX 126109860 126110033 -36489897 + THE1C LTR MaLR 169 375 0 8662 175 73 13 chrX 126110033 126111784 -36488146 - L1MA8 LINE L1 -2100 5610 3369 369 0 0 0 chrX 126111784 126111825 -36488105 + (TG)n Simple_repeat Simple_repeat 2 42 0 8662 175 73 13 chrX 126111825 126112416 -36487514 - L1MA8 LINE L1 -4341 3369 2815 2691 148 19 5 chrX 126112416 126112836 -36487094 + MSTB LTR MaLR 1 426 0 1230 196 45 5 chrX 126112841 126113065 -36486865 + MSTB LTR MaLR 194 426 0 1900 258 29 30 chrX 126113065 126113937 -36485993 - L1MA8 LINE L1 -4746 2819 2027 231 260 94 52 chrX 126114500 126114596 -36485334 + MIR3 SINE MIR 1 100 -108 626 352 20 46 chrX 126115939 126116442 -36483488 - L2 LINE L2 -6 3307 2818 1498 139 4 8 chrX 126116948 126117192 -36482738 + L1PA8 LINE L1 1 243 -5632 * 2020 196 24 44 chrX 126117185 126117685 -36482245 + L1PA8 LINE L1 1073 1562 -4899 * 16044 131 9 1 chrX 126117684 126120203 -36479727 + L1PA8 LINE L1 2032 4570 -1891 7124 100 12 0 chrX 126120205 126122023 -36477907 + L1PA8 LINE L1 4663 6487 0 23 0 0 0 chrX 126122988 126123011 -36476919 + AT_rich Low_complexity Low_complexity 1 23 0 181 244 67 0 chrX 126124396 126124441 -36475489 - L2 LINE L2 0 3313 3266 1059 331 122 29 chrX 126124487 126125503 -36474427 - L2 LINE L2 0 3313 2200 789 292 51 0 chrX 126125924 126126160 -36473770 - MIR SINE MIR -10 252 5 202 150 0 25 chrX 126126367 126126407 -36473523 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 180 111 0 0 chrX 126127818 126127845 -36472085 + (CA)n Simple_repeat Simple_repeat 2 28 0 2269 122 33 25 chrX 126129430 126129791 -36470139 + THE1B LTR MaLR 1 364 0 11600 99 8 1 chrX 126129791 126131360 -36468570 + THE1B-int LTR MaLR 1 1580 0 725 149 60 15 chrX 126131360 126131494 -36468436 + THE1B LTR MaLR 1 140 -224 2173 137 19 22 chrX 126131496 126131861 -36468069 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrX 126132609 126132630 -36467300 + AT_rich Low_complexity Low_complexity 1 21 0 2545 238 41 43 chrX 126135286 126136167 -36463763 - L1ME LINE L1 -5176 894 16 329 255 0 38 chrX 126136399 126136505 -36463425 - L1MC4a LINE L1 -1866 5942 5841 982 279 82 31 chrX 126137419 126137835 -36462095 - MLT1J1 LTR MaLR -9 437 1 343 339 16 0 chrX 126137836 126137957 -36461973 - L2 LINE L2 -594 2720 2598 203 213 98 33 chrX 126138435 126138496 -36461434 - L2 LINE L2 0 3272 3208 190 217 17 67 chrX 126138472 126138532 -36461398 + L2 LINE L2 3252 3308 -5 * 608 263 26 19 chrX 126139755 126139911 -36460019 + MIR SINE MIR 32 188 -74 226 250 119 12 chrX 126140491 126140575 -36459355 - MER91B DNA MER1_type -12 178 86 21 57 0 0 chrX 126140800 126140835 -36459095 + AT_rich Low_complexity Low_complexity 1 35 0 1707 163 18 15 chrX 126141211 126141539 -36458391 - MER61C LTR ERV1 0 434 7 1284 206 0 0 chrX 126141665 126141888 -36458042 + MER58A DNA MER1_type 2 224 0 207 173 0 39 chrX 126142524 126142576 -36457354 + T-rich Low_complexity Low_complexity 1 50 0 30 27 0 0 chrX 126142763 126142800 -36457130 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chrX 126143338 126143361 -36456569 + AT_rich Low_complexity Low_complexity 1 23 0 447 302 63 20 chrX 126143377 126143632 -36456298 - L1MEc LINE L1 -4579 1731 1466 1073 237 186 38 chrX 126143655 126143706 -36456224 - MLT1L LTR MaLR -24 591 549 965 209 133 0 chrX 126143706 126143917 -36456013 + MER8 DNA MER2_type 1 239 0 1073 237 186 38 chrX 126143917 126144371 -36455559 - MLT1L LTR MaLR -66 549 11 1578 57 21 0 chrX 126144380 126144574 -36455356 - AluSg/x SINE Alu -10 300 103 1537 253 74 5 chrX 126144679 126145110 -36454820 - LTR16B LTR ERVL 0 464 4 796 278 62 74 chrX 126145156 126146336 -36453594 - L1MEc LINE L1 -4883 1236 3 2056 134 3 0 chrX 126147273 126147571 -36452359 + AluSx SINE Alu 5 303 -9 22 0 0 0 chrX 126147751 126147773 -36452157 + AT_rich Low_complexity Low_complexity 1 22 0 32 57 0 0 chrX 126148600 126148653 -36451277 + AT_rich Low_complexity Low_complexity 1 53 0 651 186 49 114 chrX 126148866 126148997 -36450933 + L1MC4a LINE L1 5765 5903 -1905 1944 146 0 10 chrX 126148997 126149285 -36450645 + AluJo SINE Alu 3 287 -25 651 186 49 114 chrX 126149285 126149460 -36450470 + L1MC4a LINE L1 5903 6051 -1757 609 292 42 7 chrX 126149623 126149767 -36450163 + MIR3 SINE MIR 46 194 -14 245 349 12 23 chrX 126151196 126151282 -36448648 - L2 LINE L2 0 3272 3188 252 346 61 37 chrX 126152254 126152468 -36447462 - L2 LINE L2 -14 3299 3081 390 225 126 37 chrX 126153196 126153387 -36446543 + MER112 DNA MER1_type 1 208 -52 355 326 43 59 chrX 126153449 126153636 -36446294 + MIR SINE MIR 17 200 -62 252 224 86 0 chrX 126154229 126154287 -36445643 - L2 LINE L2 0 3272 3210 254 352 38 42 chrX 126154645 126154881 -36445049 - L2 LINE L2 -182 3090 2856 207 324 114 9 chrX 126156215 126156320 -36443610 + L2 LINE L2 3156 3271 -1 201 354 0 0 chrX 126156885 126156950 -36442980 + MIR SINE MIR 70 134 -128 929 189 82 10 chrX 126157394 126157600 -36442330 + MLT1A2 LTR MaLR 1 221 -153 22 35 0 0 chrX 126157748 126157777 -36442153 + AT_rich Low_complexity Low_complexity 1 29 0 7121 51 5 5 chrX 126157997 126159184 -36440746 - L1PA6 LINE L1 0 6154 4967 1041 68 0 0 chrX 126159184 126159317 -36440613 + L1P LINE L1 4060 4192 -1954 604 216 47 34 chrX 126159327 126159383 -36440547 + MLT1A2 LTR MaLR 225 279 -111 2640 123 44 2 chrX 126159383 126159791 -36440139 - MER61B LTR ERV1 0 425 1 604 216 47 34 chrX 126159791 126159882 -36440048 + MLT1A2 LTR MaLR 279 374 -16 22 0 0 0 chrX 126159900 126159922 -36440008 + AT_rich Low_complexity Low_complexity 1 22 0 2053 96 17 0 chrX 126160080 126160371 -36439559 + L1PB1 LINE L1 5851 6146 -5 4438 163 25 32 chrX 126160642 126161515 -36438415 - L1MB1 LINE L1 0 6168 5300 252 0 0 0 chrX 126161515 126161543 -36438387 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4438 163 25 32 chrX 126161543 126161679 -36438251 - L1MB1 LINE L1 -868 5300 5164 44595 34 1 1 chrX 126162061 126168210 -36431720 + L1PA3 LINE L1 5 6152 -3 257 246 16 16 chrX 126169728 126169789 -36430141 - MIR SINE MIR -2 260 200 793 267 80 4 chrX 126170767 126170992 -36428938 - MIR SINE MIR -15 247 6 29 0 0 0 chrX 126171309 126171338 -36428592 + AT_rich Low_complexity Low_complexity 1 29 0 588 51 13 0 chrX 126172133 126172211 -36427719 + MADE1 DNA Mariner 2 80 0 1701 121 16 96 chrX 126172503 126172858 -36427072 - AluSx SINE Alu 0 312 1 23 78 0 0 chrX 126173556 126173607 -36426323 + AT_rich Low_complexity Low_complexity 1 51 0 1215 162 15 39 chrX 126176964 126177223 -36422707 - MER46C DNA MER2_type 0 338 86 530 215 77 0 chrX 126177241 126177371 -36422559 - MER46C DNA MER2_type -197 141 2 493 207 7 100 chrX 126180260 126180400 -36419530 + MIR3 SINE MIR 81 207 -1 246 161 210 25 chrX 126180434 126180515 -36419415 - MIR SINE MIR -40 222 127 182 286 14 29 chrX 126180532 126180602 -36419328 - MIR3 SINE MIR -136 72 4 436 229 242 25 chrX 126180774 126180931 -36418999 + MIR3 SINE MIR 18 208 0 5211 157 21 8 chrX 126183612 126184826 -36415104 - L1PB4 LINE L1 0 6156 4923 2037 122 7 0 chrX 126185215 126185534 -36414396 - AluSg SINE Alu 0 321 1 237 65 0 0 chrX 126185539 126185570 -36414360 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 220 118 0 0 chrX 126186162 126186196 -36413734 + MIR SINE MIR 108 141 -67 948 291 138 13 chrX 126186301 126186693 -36413237 - L3 LINE CR1 -88 1489 1049 1525 332 93 29 chrX 126187354 126188083 -36411847 - L3 LINE CR1 -550 1027 252 21 0 0 0 chrX 126188495 126188516 -36411414 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 126188719 126188742 -36411188 + AT_rich Low_complexity Low_complexity 1 23 0 824 279 10 0 chrX 126189168 126189372 -36410558 + MIR SINE MIR 56 261 -1 2021 101 0 42 chrX 126189534 126189841 -36410089 + AluSx SINE Alu 1 294 -18 525 314 21 16 chrX 126190222 126190416 -36409514 + MIR SINE MIR 58 252 -10 810 244 25 54 chrX 126190715 126190957 -36408973 - MIR SINE MIR -26 236 2 200 189 0 0 chrX 126191524 126191561 -36408369 + CT-rich Low_complexity Low_complexity 3 39 0 537 289 30 0 chrX 126191751 126191886 -36408044 + MIR SINE MIR 48 186 -76 202 200 0 0 chrX 126193932 126193967 -36405963 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chrX 126194299 126194328 -36405602 + AT_rich Low_complexity Low_complexity 1 29 0 604 234 0 8 chrX 126194340 126194464 -36405466 - L2 LINE L2 -9 3304 3182 1673 189 18 36 chrX 126194608 126194898 -36405032 - MLT1A1 LTR MaLR -37 328 43 1852 175 0 0 chrX 126194898 126195190 -36404740 - AluJb SINE Alu -20 292 1 1673 189 18 36 chrX 126195190 126195233 -36404697 - MLT1A1 LTR MaLR -322 43 1 224 231 38 50 chrX 126195662 126195801 -36404129 - MIR SINE MIR -24 238 48 2379 91 7 0 chrX 126195805 126196112 -36403818 + AluSc SINE Alu 1 309 0 200 324 251 24 chrX 126196223 126196594 -36403336 - L2 LINE L2 -1154 2160 1706 2620 56 0 0 chrX 126196839 126197145 -36402785 - AluY SINE Alu -5 306 1 272 253 40 0 chrX 126197750 126197825 -36402105 + (TATG)n Simple_repeat Simple_repeat 2 79 0 511 350 27 16 chrX 126198502 126198688 -36401242 + MIR3 SINE MIR 20 207 -1 3526 116 77 7 chrX 126199040 126199610 -36400320 - MER4B LTR ERV1 0 610 1 1018 184 33 33 chrX 126200638 126200850 -36399080 - MER20 DNA MER1_type -6 213 2 241 242 129 32 chrX 126201724 126201848 -36398082 - L1ME4a LINE L1 -12 6109 5974 1798 209 125 65 chrX 126202510 126203190 -36396740 - MER50 LTR ERV1 0 734 14 867 194 59 54 chrX 126203234 126203456 -36396474 - MLT1J2 LTR MaLR -223 227 5 844 115 7 7 chrX 126203923 126204116 -36395814 + AluSp/q SINE Alu 175 367 0 21 0 0 0 chrX 126204833 126204854 -36395076 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chrX 126204986 126205033 -36394897 + AT_rich Low_complexity Low_complexity 1 47 0 455 270 113 0 chrX 126205333 126205448 -36394482 - L2 LINE L2 -15 3298 3171 674 302 15 24 chrX 126205449 126205654 -36394276 + MIR SINE MIR 48 250 -12 2329 84 3 0 chrX 126206136 126206432 -36393498 + AluSp SINE Alu 1 297 -16 4316 141 29 39 chrX 126206860 126206925 -36393005 + L1MB2 LINE L1 5336 5400 -771 2294 113 0 0 chrX 126206925 126207234 -36392696 + AluSx SINE Alu 4 312 0 4316 141 29 39 chrX 126207234 126208010 -36391920 + L1MB2 LINE L1 5400 6168 -3 22 35 0 0 chrX 126208013 126208042 -36391888 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chrX 126209696 126209733 -36390197 + AT_rich Low_complexity Low_complexity 1 37 0 528 271 18 41 chrX 126210040 126210210 -36389720 + MIR3 SINE MIR 43 208 0 1007 251 49 4 chrX 126210350 126210597 -36389333 + MIR SINE MIR 5 262 0 387 272 96 0 chrX 126210637 126210773 -36389157 + MIR SINE MIR 101 249 -13 952 286 50 13 chrX 126210980 126211358 -36388572 - L1ME4a LINE L1 -197 5924 5533 414 162 0 14 chrX 126211677 126211751 -36388179 + L1MA5A LINE L1 6179 6251 -46 3170 147 6 4 chrX 126211751 126212248 -36387682 - MER41E LTR ERV1 0 512 15 301 80 0 40 chrX 126212320 126212370 -36387560 + L1MA5 LINE L1 6253 6300 0 1675 96 17 166 chrX 126212401 126212757 -36387173 + AluSx SINE Alu 1 303 -9 624 305 60 10 chrX 126212763 126212963 -36386967 + MIR SINE MIR 28 237 -25 186 43 0 0 chrX 126213011 126213034 -36386896 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 803 244 16 47 chrX 126213142 126213396 -36386534 + L1ME2 LINE L1 5909 6154 -10 2084 117 7 0 chrX 126213502 126213809 -36386121 + AluSc SINE Alu 1 309 0 266 216 0 34 chrX 126213907 126213995 -36385935 + L1MC5 LINE L1 7833 7917 -44 21 57 0 0 chrX 126216234 126216269 -36383661 + AT_rich Low_complexity Low_complexity 1 35 0 980 246 106 0 chrX 126216430 126216666 -36383264 + MIR SINE MIR 1 261 -1 386 161 23 46 chrX 126216738 126216825 -36383105 + L2 LINE L2 3229 3313 0 * 494 227 102 8 chrX 126216823 126216951 -36382979 - MIR SINE MIR -42 220 81 671 249 101 0 chrX 126219095 126219284 -36380646 + MIR SINE MIR 55 262 0 545 338 98 49 chrX 126220956 126221427 -36378503 - L2 LINE L2 -457 2857 2364 240 368 49 14 chrX 126221497 126221641 -36378289 - L2 LINE L2 -1124 2190 2042 2016 212 45 16 chrX 126221662 126222152 -36377778 + Charlie1b DNA MER1_type 2 505 -18 194 0 39 0 chrX 126223153 126223179 -36376751 + (GA)n Simple_repeat Simple_repeat 2 28 0 273 200 147 0 chrX 126224338 126224413 -36375517 + MER102a DNA MER1_type 100 185 -145 214 289 0 0 chrX 126224423 126224468 -36375462 - L2 LINE L2 -19 3294 3250 254 313 10 30 chrX 126224505 126224604 -36375326 + MER102a DNA MER1_type 225 321 -9 320 285 52 96 chrX 126226231 126226667 -36373263 + HAL1b LINE L1 54 461 -887 2424 93 0 3 chrX 126226667 126226979 -36372951 - AluSp SINE Alu -2 311 1 320 285 52 96 chrX 126226979 126227118 -36372812 + HAL1b LINE L1 461 604 -744 21 57 0 0 chrX 126227226 126227261 -36372669 + AT_rich Low_complexity Low_complexity 1 35 0 1659 96 25 0 chrX 126227261 126227501 -36372429 - L1PA15 LINE L1 -9 6156 5911 239 287 90 50 chrX 126227555 126227834 -36372096 + L1M4 LINE L1 2676 2965 -3181 415 204 76 23 chrX 126227855 126227987 -36371943 + L1M4 LINE L1 3055 3193 -2953 918 258 50 7 chrX 126228142 126228421 -36371509 - L1MC/D LINE L1 -2242 5566 5276 1698 234 130 39 chrX 126228481 126228743 -36371187 + L1MC4 LINE L1 6345 6582 -1460 2427 140 56 12 chrX 126228743 126229157 -36370773 - MSTB1 LTR MaLR 0 432 1 1698 234 130 39 chrX 126229157 126229177 -36370753 + L1MC4 LINE L1 6582 6599 -1443 378 0 0 0 chrX 126229177 126229219 -36370711 + (CA)n Simple_repeat Simple_repeat 2 43 0 1698 234 130 39 chrX 126229219 126229580 -36370350 + L1MC4 LINE L1 6599 7048 -994 540 285 54 54 chrX 126229630 126229702 -36370228 - MIR SINE MIR -38 224 153 1614 172 72 12 chrX 126229702 126230022 -36369908 + MER44D DNA MER2_type 1 609 0 540 285 54 54 chrX 126230022 126230170 -36369760 - MIR SINE MIR -108 154 4 683 272 116 42 chrX 126230192 126230641 -36369289 - L1ME4a LINE L1 -226 5895 5414 844 152 25 44 chrX 126230644 126230848 -36369082 - L1MA9 LINE L1 -3 6309 6110 208 143 0 0 chrX 126231273 126231308 -36368622 + (A)n Simple_repeat Simple_repeat 1 35 0 661 133 109 0 chrX 126231310 126231438 -36368492 + AluSp/q SINE Alu 157 298 -15 320 176 15 0 chrX 126231438 126231506 -36368424 + GA-rich Low_complexity Low_complexity 1 69 0 264 125 104 0 chrX 126231507 126231555 -36368375 - L1MA7 LINE L1 -167 6124 6072 258 81 0 0 chrX 126231555 126231592 -36368338 + (GGAGA)n Simple_repeat Simple_repeat 3 39 0 264 125 104 0 chrX 126231592 126231640 -36368290 - L1MA7 LINE L1 -167 6124 6072 249 83 0 0 chrX 126231640 126231676 -36368254 + (GGAGA)n Simple_repeat Simple_repeat 3 38 0 1287 167 5 0 chrX 126231686 126231908 -36368022 - L1MA9 LINE L1 -207 6105 5883 7367 99 266 0 chrX 126231908 126233216 -36366714 - L1P LINE L1 -784 5362 3707 309 157 0 0 chrX 126233218 126233269 -36366661 - L1MA8 LINE L1 -46 6245 6195 2468 224 71 44 chrX 126233270 126233845 -36366085 - L1M2 LINE L1 -4180 2927 2369 2338 94 3 0 chrX 126233845 126234142 -36365788 + AluSp SINE Alu 1 298 -15 2468 224 71 44 chrX 126234142 126234531 -36365399 - L1M2 LINE L1 -4738 2369 1992 315 0 0 0 chrX 126234531 126234566 -36365364 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2468 224 71 44 chrX 126234566 126235223 -36364707 - L1M2 LINE L1 -5115 1992 1258 1367 242 7 7 chrX 126235230 126235528 -36364402 - L1M2 LINE L1 -6732 298 1 273 319 19 0 chrX 126235533 126235693 -36364237 - L1M LINE L1 -694 5427 5265 381 263 153 7 chrX 126236392 126236529 -36363401 + MIR3 SINE MIR 5 161 -47 1571 208 93 90 chrX 126236548 126237160 -36362770 - L1MC3 LINE L1 -1 7784 7171 269 230 0 40 chrX 126237678 126237752 -36362178 - HAL1 LINE L1 -2019 488 418 939 227 56 28 chrX 126237833 126238084 -36361846 - MIR SINE MIR 0 262 5 265 314 0 0 chrX 126238155 126238225 -36361705 + L2 LINE L2 3239 3308 -5 24 0 0 0 chrX 126238669 126238693 -36361237 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 126238936 126238964 -36360966 + AT_rich Low_complexity Low_complexity 1 28 0 192 200 0 25 chrX 126241157 126241197 -36358733 - L2 LINE L2 0 3272 3234 22 56 0 0 chrX 126241347 126241383 -36358547 + AT_rich Low_complexity Low_complexity 1 36 0 919 236 50 0 chrX 126241474 126241673 -36358257 + MER63A DNA MER1_type 1 209 -1 1369 181 49 3 chrX 126241702 126241989 -36357941 - L1MD3 LINE L1 -12 7983 7684 521 259 48 71 chrX 126241984 126242290 -36357640 - L1ME3 LINE L1 -329 5833 5519 * 222 394 82 24 chrX 126242298 126242468 -36357462 - L2 LINE L2 -40 3232 3053 1261 157 157 0 chrX 126242484 126242764 -36357166 - MER33 DNA MER1_type 0 324 1 521 15 15 0 chrX 126243389 126243455 -36356475 + (TA)n Simple_repeat Simple_repeat 2 68 0 1026 275 50 73 chrX 126243671 126244148 -36355782 + L2 LINE L2 2843 3308 -5 234 0 0 0 chrX 126245374 126245400 -36354530 + (T)n Simple_repeat Simple_repeat 1 26 0 233 323 52 26 chrX 126245460 126245615 -36354315 + L2 LINE L2 2127 2285 -1029 221 256 70 35 chrX 126245796 126245882 -36354048 + L2 LINE L2 2397 2485 -829 258 116 0 0 chrX 126245945 126245988 -36353942 + (GA)n Simple_repeat Simple_repeat 2 44 0 288 340 35 40 chrX 126246077 126246277 -36353653 + L2 LINE L2 2564 2762 -552 1250 274 97 25 chrX 126246672 126247278 -36352652 - L1ME4a LINE L1 -1 6120 5471 250 242 0 30 chrX 126247387 126247453 -36352477 + L2 LINE L2 3250 3313 0 659 211 265 0 chrX 126249578 126249763 -36350167 - MIR SINE MIR -26 236 3 823 268 13 17 chrX 126250365 126250596 -36349334 + MIR SINE MIR 2 231 -31 5789 33 0 1 chrX 126250846 126251538 -36348392 - L1PA5 LINE L1 -5 6149 5459 1766 28 0 0 chrX 126251542 126251760 -36348170 + L1PA5 LINE L1 5254 5471 -683 21 0 0 0 chrX 126251820 126251841 -36348089 + AT_rich Low_complexity Low_complexity 1 21 0 2420 87 0 0 chrX 126252097 126252396 -36347534 - AluSx SINE Alu -13 299 1 21 0 0 0 chrX 126252499 126252520 -36347410 + AT_rich Low_complexity Low_complexity 1 21 0 276 234 318 0 chrX 126252547 126252654 -36347276 - MIR3 SINE MIR -14 194 54 2012 149 17 8 chrX 126252758 126253162 -36346768 - MER92C LTR ERV1 -4 550 101 287 188 21 0 chrX 126253209 126253257 -36346673 - MER92B LTR ERV1 -532 104 56 * 429 200 12 12 chrX 126253253 126253338 -36346592 - MER92C LTR ERV1 -469 85 1 302 143 20 0 chrX 126253701 126253750 -36346180 + MIR SINE MIR 104 153 -55 237 288 35 117 chrX 126254296 126254348 -36345582 - MIR SINE MIR -61 147 92 2336 73 3 10 chrX 126254348 126254648 -36345282 - AluSp SINE Alu -15 298 1 237 288 35 117 chrX 126254648 126254775 -36345155 - MIR SINE MIR -116 92 33 378 0 0 0 chrX 126254982 126255024 -36344906 + (CA)n Simple_repeat Simple_repeat 2 43 0 180 77 0 0 chrX 126255116 126255142 -36344788 + (TG)n Simple_repeat Simple_repeat 2 27 0 240 35 0 0 chrX 126255147 126255176 -36344754 + (T)n Simple_repeat Simple_repeat 1 29 0 228 330 9 73 chrX 126256740 126256849 -36343081 - L2 LINE L2 -48 3224 3123 2349 81 0 3 chrX 126257227 126257524 -36342406 - AluSg SINE Alu -7 303 8 1276 159 44 26 chrX 126258360 126258630 -36341300 - L1MB7 LINE L1 -11 6173 5899 4864 184 24 13 chrX 126258631 126259313 -36340617 - L1MB7 LINE L1 -336 5838 5165 2076 58 0 4 chrX 126259313 126259572 -36340358 - AluY SINE Alu -14 297 40 4864 184 24 13 chrX 126259572 126260380 -36339550 - L1MB7 LINE L1 -1009 5165 4333 878 135 0 8 chrX 126262746 126262872 -36337058 - AluSq/x SINE Alu -188 125 1 387 252 301 7 chrX 126264563 126264706 -36335224 + MER5A DNA MER1_type 4 188 -1 727 261 24 29 chrX 126265277 126265484 -36334446 - L2 LINE L2 -30 3283 3078 197 312 184 24 chrX 126265556 126265681 -36334249 + L2 LINE L2 3127 3271 -1 25 31 0 0 chrX 126267296 126267328 -36332602 + AT_rich Low_complexity Low_complexity 1 32 0 656 101 10 10 chrX 126267328 126267427 -36332503 - AluJ/FLAM SINE Alu -213 99 1 2374 94 7 0 chrX 126269475 126269784 -36330146 - AluSx SINE Alu -1 311 1 205 266 62 16 chrX 126269976 126270040 -36329890 - MIR SINE MIR -2 260 194 702 307 28 16 chrX 126270105 126270356 -36329574 - MIR SINE MIR -1 261 8 312 324 61 40 chrX 126271528 126271676 -36328254 - MER5A DNA MER1_type -32 157 7 327 25 0 0 chrX 126271933 126271973 -36327957 + (CA)n Simple_repeat Simple_repeat 2 41 0 212 268 0 18 chrX 126273057 126273113 -36326817 + (TAG)n Simple_repeat Simple_repeat 1 55 0 630 225 115 37 chrX 126273138 126273329 -36326601 - MIR SINE MIR -19 243 38 21 0 0 0 chrX 126274922 126274943 -36324987 + AT_rich Low_complexity Low_complexity 1 21 0 765 132 6 28 chrX 126275477 126275659 -36324271 + (TA)n Simple_repeat Simple_repeat 2 179 0 1016 231 27 92 chrX 126276056 126276393 -36323537 + MER102b DNA MER1_type 20 334 -7 22 35 0 0 chrX 126276493 126276522 -36323408 + AT_rich Low_complexity Low_complexity 1 29 0 200 345 121 0 chrX 126278116 126278281 -36321649 + L2 LINE L2 2136 2320 -994 205 333 91 30 chrX 126278585 126278724 -36321206 + L2 LINE L2 2932 3084 -188 2314 77 3 3 chrX 126278724 126279024 -36320906 - AluY SINE Alu -11 300 1 205 333 91 30 chrX 126279024 126279049 -36320881 + L2 LINE L2 3084 3106 -166 268 208 13 13 chrX 126279542 126279619 -36320311 + (TA)n Simple_repeat Simple_repeat 1 77 0 417 336 25 0 chrX 126279640 126279759 -36320171 - L2 LINE L2 -12 3260 3139 702 254 174 0 chrX 126279968 126280169 -36319761 - MIR SINE MIR -26 236 1 324 343 130 44 chrX 126280295 126281142 -36318788 - L2 LINE L2 -217 3055 2113 213 129 0 0 chrX 126281733 126281764 -36318166 - MIR SINE MIR -138 124 94 331 353 20 20 chrX 126282010 126282163 -36317767 - L2 LINE L2 -473 2841 2689 2353 90 6 0 chrX 126282316 126282627 -36317303 + AluSq SINE Alu 1 313 0 183 333 50 20 chrX 126282655 126282754 -36317176 - L2 LINE L2 -820 2494 2393 * 474 226 71 32 chrX 126282751 126282906 -36317024 - L2 LINE L2 0 3313 3153 388 289 0 0 chrX 126282911 126283015 -36316915 - MIR SINE MIR -67 141 38 338 304 54 18 chrX 126284448 126284560 -36315370 + MIR3 SINE MIR 86 201 -7 26 30 0 0 chrX 126286079 126286112 -36313818 + AT_rich Low_complexity Low_complexity 1 33 0 2293 92 14 0 chrX 126287493 126287785 -36312145 + AluSg SINE Alu 1 296 -14 2147 103 38 7 chrX 126287794 126288086 -36311844 - AluSg SINE Alu -9 301 1 1385 314 68 23 chrX 126288100 126288915 -36311015 - L1MEd LINE L1 -4862 1257 407 262 270 124 0 chrX 126289055 126289144 -36310786 + MIR SINE MIR 41 140 -68 557 349 16 0 chrX 126289616 126289812 -36310118 - MIR3 SINE MIR -3 205 6 528 320 81 14 chrX 126289951 126290168 -36309762 + MIR SINE MIR 18 245 -17 999 298 46 27 chrX 126290591 126290964 -36308966 - MLT1J LTR MaLR -59 452 73 780 116 26 107 chrX 126291138 126291371 -36308559 + Charlie5 DNA MER1_type 2372 2585 -27 1238 143 12 28 chrX 126293655 126293776 -36306154 - L1MA8 LINE L1 0 6291 6170 2399 131 51 10 chrX 126293776 126294187 -36305743 + MSTA LTR MaLR 1 428 0 1238 143 12 28 chrX 126294187 126294317 -36305613 - L1MA8 LINE L1 -121 6170 6044 205 206 254 0 chrX 126294374 126294437 -36305493 - MIR SINE MIR -12 250 172 361 252 107 15 chrX 126294527 126294658 -36305272 - MER103 DNA DNA -22 144 2 316 337 55 55 chrX 126294717 126294880 -36305050 - MIR SINE MIR -90 172 10 370 284 149 0 chrX 126294886 126295034 -36304896 - MIR SINE MIR -1 261 92 274 261 29 0 chrX 126295097 126295166 -36304764 + MIR SINE MIR 81 151 -111 595 299 58 13 chrX 126295459 126295683 -36304247 + MIR SINE MIR 2 235 -27 197 276 7 0 chrX 126296328 126296473 -36303457 + (CA)n Simple_repeat Simple_repeat 2 147 0 21 36 0 0 chrX 126296630 126296658 -36303272 + AT_rich Low_complexity Low_complexity 1 28 0 283 214 143 0 chrX 126297421 126297491 -36302439 + MER116 DNA Mariner 1 80 0 2259 109 22 41 chrX 126297960 126298205 -36301725 + MER46B DNA MER2_type 1 249 -2482 180 0 0 0 chrX 126298205 126298225 -36301705 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2063 102 11 3 chrX 126298227 126298510 -36301420 - AluSx SINE Alu -26 286 2 2259 109 22 41 chrX 126298510 126298629 -36301301 + MER46B DNA MER2_type 116 236 0 311 284 81 7 chrX 126299046 126299194 -36300736 + L1ME4a LINE L1 5696 5854 -267 643 339 73 24 chrX 126299420 126299803 -36300127 + L3b LINE CR1 1178 1579 -4 457 277 195 19 chrX 126299924 126300308 -36299622 + L1MC4a LINE L1 5386 5686 -484 1845 176 0 7 chrX 126300597 126300903 -36299027 - AluJo SINE Alu -6 306 3 301 313 55 16 chrX 126301320 126301448 -36298482 + L1M4 LINE L1 4712 4844 -1302 383 306 33 16 chrX 126302915 126303036 -36296894 - L2 LINE L2 -4 3268 3146 326 261 71 43 chrX 126303151 126303335 -36296595 - MER5A DNA MER1_type 0 189 1 218 376 0 17 chrX 126303340 126303457 -36296473 - L3b LINE CR1 -204 1379 1265 246 206 216 10 chrX 126303806 126303908 -36296022 + MIR SINE MIR 126 248 -14 386 273 82 12 chrX 126304181 126304349 -36295581 - MIR SINE MIR -40 222 40 2140 99 3 0 chrX 126304821 126305103 -36294827 - AluSx SINE Alu -29 283 1 253 289 0 0 chrX 126305445 126305497 -36294433 - Zaphod DNA AcHobo -1 4030 3979 467 344 72 53 chrX 126305501 126305934 -36293996 - MER115 DNA AcHobo -245 448 8 244 76 61 15 chrX 126306861 126306927 -36293003 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 186 240 0 0 chrX 126306929 126306979 -36292951 + GA-rich Low_complexity Low_complexity 1 50 0 201 213 0 0 chrX 126307454 126307501 -36292429 + (CA)n Simple_repeat Simple_repeat 1 47 0 697 267 111 23 chrX 126308317 126308669 -36291261 + MLT1I LTR MaLR 20 403 -6 522 278 25 45 chrX 126308694 126308890 -36291040 + MIR3 SINE MIR 12 207 -55 2221 252 35 55 chrX 126311658 126312614 -36287316 + L2 LINE L2 2368 3309 -4 384 215 0 0 chrX 126312668 126312775 -36287155 + CT-rich Low_complexity Low_complexity 2 108 0 525 301 95 24 chrX 126312788 126313014 -36286916 - MIR SINE MIR -13 249 10 197 328 15 15 chrX 126313089 126313156 -36286774 - MIR3 SINE MIR -3 205 139 390 289 70 9 chrX 126313182 126313296 -36286634 - MIR SINE MIR -65 143 23 529 274 122 6 chrX 126313437 126313601 -36286329 - MER5A DNA MER1_type 0 189 7 228 276 249 17 chrX 126314768 126314965 -36284965 - MIR SINE MIR -27 235 5 336 312 71 18 chrX 126314981 126315157 -36284773 - MIR SINE MIR -46 216 37 786 322 50 0 chrX 126316083 126316322 -36283608 + MIR SINE MIR 2 252 -10 1290 252 143 12 chrX 126316441 126316861 -36283069 - MLT1D LTR MaLR 0 505 31 1009 297 146 28 chrX 126317849 126318570 -36281360 + L2 LINE L2 1029 1834 -1480 2409 220 47 30 chrX 126318629 126319888 -36280042 - L1MC4 LINE L1 -142 7900 6473 1319 296 111 23 chrX 126319888 126320544 -36279386 + L2 LINE L2 1823 2536 -778 694 139 17 9 chrX 126320552 126320667 -36279263 - Tigger7 DNA MER2_type 0 2587 2472 7124 107 4 15 chrX 126320667 126322008 -36277922 - L1MA2 LINE L1 -21 6283 4957 5435 91 5 21 chrX 126322009 126322820 -36277110 - L1PB1 LINE L1 0 6151 5354 356 305 113 40 chrX 126322820 126323332 -36276598 + L2 LINE L2 2656 3272 -41 1068 128 20 29 chrX 126324296 126324500 -36275430 - L1MA9 LINE L1 -4 6308 6107 388 265 83 0 chrX 126324998 126325130 -36274800 - L1MA9 LINE L1 -38 6274 6132 819 199 23 6 chrX 126325149 126325325 -36274605 + MLT1A2 LTR MaLR 196 374 0 17665 174 19 65 chrX 126325399 126326956 -36272974 + L1PA16 LINE L1 124 1752 -5097 2040 125 3 48 chrX 126326956 126327269 -36272661 + AluSx SINE Alu 3 301 -11 17665 174 19 65 chrX 126327269 126330311 -36269619 + L1PA16 LINE L1 1752 4372 -2477 360 0 0 0 chrX 126330311 126330351 -36269579 + (CAA)n Simple_repeat Simple_repeat 3 42 0 17665 174 19 65 chrX 126330351 126330985 -36268945 + L1PA16 LINE L1 4372 5034 -1815 44444 36 1 1 chrX 126331001 126337133 -36262797 - L1PA3 LINE L1 -3 6152 27 1007 201 5 0 chrX 126337138 126337357 -36262573 + L1 LINE L1 4319 4538 -1608 5104 139 6 43 chrX 126337366 126337414 -36262516 + L1PA16 LINE L1 5987 6035 -834 2896 88 25 0 chrX 126337414 126337812 -36262118 + L1PA10 LINE L1 5750 6157 -11 5104 139 6 43 chrX 126337812 126338339 -36261591 + L1PA16 LINE L1 6035 6518 -351 2212 114 0 7 chrX 126338339 126338646 -36261284 + AluSg SINE Alu 1 305 -5 5104 139 6 43 chrX 126338646 126338980 -36260950 + L1PA16 LINE L1 6518 6863 -6 25 31 0 0 chrX 126338981 126339013 -36260917 + AT_rich Low_complexity Low_complexity 1 32 0 632 235 18 12 chrX 126339013 126339179 -36260751 - L1MA9 LINE L1 -202 6110 5944 258 244 47 0 chrX 126339216 126339302 -36260628 + L1MC4 LINE L1 6614 6703 -1339 * 1208 174 14 2 chrX 126339279 126339518 -36260412 - L1MA9 LINE L1 -195 5961 5724 180 152 0 30 chrX 126339914 126339947 -36259983 + L2 LINE L2 3237 3268 -4 * 228 328 131 33 chrX 126339945 126340067 -36259863 - L2 LINE L2 0 3272 3139 198 358 38 56 chrX 126340157 126340483 -36259447 - L2 LINE L2 -190 3082 2765 672 328 118 12 chrX 126340538 126340943 -36258987 + L3 LINE CR1 1128 1575 -2 808 246 125 42 chrX 126341072 126341312 -36258618 - MIR SINE MIR -1 261 2 1778 162 17 24 chrX 126341478 126341774 -36258156 + AluJb SINE Alu 3 296 -16 2222 123 0 0 chrX 126343344 126343637 -36256293 + AluSx SINE Alu 1 293 -19 261 298 0 0 chrX 126344626 126344683 -36255247 + (TG)n Simple_repeat Simple_repeat 2 58 0 319 329 20 0 chrX 126346462 126346611 -36253319 - L1ME3 LINE L1 -273 5872 5721 567 290 58 0 chrX 126346651 126346875 -36253055 - L1ME3 LINE L1 -1453 4676 4440 245 333 45 29 chrX 126347059 126347371 -36252559 - L1ME3 LINE L1 -1947 4182 3866 238 164 0 75 chrX 126347530 126347597 -36252333 - L1P LINE L1 -2386 3760 3699 693 223 0 0 chrX 126347616 126347746 -36252184 + FLAM_A SINE Alu 1 130 -12 1151 274 137 18 chrX 126347780 126348703 -36251227 - L1ME3 LINE L1 -2479 3650 2619 3115 268 56 55 chrX 126348734 126350460 -36249470 - L1M4 LINE L1 -1950 4196 2469 1767 164 22 0 chrX 126350483 126350782 -36249148 - AluJb SINE Alu 0 305 1 24 0 0 0 chrX 126351257 126351281 -36248649 + AT_rich Low_complexity Low_complexity 1 24 0 460 260 55 39 chrX 126351287 126351468 -36248462 - L1ME3 LINE L1 -5694 425 242 1669 262 149 19 chrX 126352094 126352743 -36247187 + L2 LINE L2 1819 2552 -762 260 307 33 65 chrX 126352710 126352863 -36247067 - MIR SINE MIR -57 205 58 * 796 163 0 15 chrX 126353900 126354035 -36245895 + FLAM_C SINE Alu 1 133 0 75 0 0 0 chrX 126356269 126356344 -36243586 + AT_rich Low_complexity Low_complexity 1 75 0 854 266 15 46 chrX 126358193 126358452 -36241478 - MIR SINE MIR -9 253 3 608 272 0 20 chrX 126359134 126359281 -36240649 + MIR SINE MIR 14 157 -105 205 293 0 0 chrX 126359389 126359447 -36240483 + MIR SINE MIR 159 216 -46 429 20 0 0 chrX 126359462 126359512 -36240418 + (CA)n Simple_repeat Simple_repeat 1 50 0 876 249 40 22 chrX 126359923 126360021 -36239909 - MIR SINE MIR 0 262 167 1849 179 0 0 chrX 126360021 126360318 -36239612 - AluJb SINE Alu -15 297 1 876 249 40 22 chrX 126360318 126360444 -36239486 - MIR SINE MIR -95 167 34 21 36 0 0 chrX 126360589 126360617 -36239313 + AT_rich Low_complexity Low_complexity 1 28 0 583 292 130 48 chrX 126361886 126362349 -36237581 + L1M4 LINE L1 4667 5167 -979 919 205 50 5 chrX 126362410 126362610 -36237320 - MER3 DNA MER1_type 0 209 1 371 353 49 0 chrX 126362687 126362789 -36237141 - L2 LINE L2 -32 3240 3134 3097 99 48 38 chrX 126362811 126363315 -36236615 - HSMAR2 DNA Mariner -4 1298 790 1329 125 0 25 chrX 126363315 126363515 -36236415 - AluSx SINE Alu -90 222 28 5290 122 4 0 chrX 126363516 126364287 -36235643 - HSMAR2 DNA Mariner -527 775 2 23 0 0 0 chrX 126364321 126364344 -36235586 + AT_rich Low_complexity Low_complexity 1 23 0 509 304 136 10 chrX 126364388 126364596 -36235334 - L2 LINE L2 -309 3004 2774 1976 123 0 14 chrX 126365597 126365881 -36234049 - AluSx SINE Alu -32 280 1 1041 257 62 96 chrX 126365881 126366086 -36233844 - L2 LINE L2 -24 3289 3079 2215 81 12 30 chrX 126366086 126366188 -36233742 + L1MA2 LINE L1 5976 6078 -226 2369 86 0 10 chrX 126366188 126366489 -36233441 - AluSq SINE Alu -15 298 1 2215 81 12 30 chrX 126366489 126366721 -36233209 + L1MA2 LINE L1 6078 6304 0 1041 257 62 96 chrX 126366721 126367124 -36232806 - L2 LINE L2 -234 3079 2717 187 326 0 0 chrX 126367902 126367945 -36231985 - MIR SINE MIR 0 262 220 2136 170 42 11 chrX 126367969 126368138 -36231792 - L1MA10 LINE L1 -10 6324 6162 396 40 0 0 chrX 126368138 126368188 -36231742 + (TG)n Simple_repeat Simple_repeat 2 51 0 2136 170 42 11 chrX 126368188 126368472 -36231458 - L1MA10 LINE L1 -172 6162 5857 251 179 0 0 chrX 126368472 126368511 -36231419 + 5S rRNA rRNA 2 40 -81 402 250 152 67 chrX 126368520 126368649 -36231281 - MIR SINE MIR -72 190 73 2201 99 0 3 chrX 126368649 126368942 -36230988 + AluSx SINE Alu 6 297 -15 402 250 152 67 chrX 126368942 126368961 -36230969 - MIR SINE MIR -189 73 57 183 42 0 0 chrX 126368961 126368985 -36230945 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 402 250 152 67 chrX 126368985 126368999 -36230931 - MIR SINE MIR -205 57 13 327 283 71 9 chrX 126369166 126369279 -36230651 + MIR SINE MIR 117 236 -26 25 51 0 0 chrX 126370188 126370227 -36229703 + AT_rich Low_complexity Low_complexity 1 39 0 252 350 73 32 chrX 126371260 126371383 -36228547 + L2 LINE L2 3122 3249 -23 2449 61 0 0 chrX 126371568 126371864 -36228066 + AluY SINE Alu 1 296 -15 411 250 141 16 chrX 126371939 126372067 -36227863 - MER5A DNA MER1_type -3 186 43 252 318 182 8 chrX 126371959 126372091 -36227839 + MER5A DNA MER1_type 35 189 0 * 571 238 0 0 chrX 126374781 126374903 -36225027 - MIR SINE MIR -59 203 82 760 259 56 35 chrX 126375198 126375430 -36224500 - MIR SINE MIR -18 244 8 444 246 174 65 chrX 126376389 126376665 -36223265 + MER102a DNA MER1_type 36 330 0 1432 242 176 30 chrX 126377448 126377943 -36221987 - MLT1G LTR MaLR -9 581 15 272 229 0 0 chrX 126377953 126378001 -36221929 + L2 LINE L2 3196 3243 -29 2782 139 9 0 chrX 126378051 126378475 -36221455 - MSTA LTR MaLR 0 428 1 488 220 104 55 chrX 126379445 126379627 -36220303 - L2 LINE L2 0 3313 3123 184 265 20 0 chrX 126379624 126379673 -36220257 - MIR3 SINE MIR -8 200 151 * 475 236 264 5 chrX 126380214 126380426 -36219504 - L2 LINE L2 -39 3274 3008 21 0 0 0 chrX 126380856 126380877 -36219053 + AT_rich Low_complexity Low_complexity 1 21 0 509 272 122 0 chrX 126382211 126382407 -36217523 + MIR SINE MIR 39 259 -3 26 64 0 0 chrX 126383583 126383630 -36216300 + AT_rich Low_complexity Low_complexity 1 47 0 778 207 0 0 chrX 126384474 126384609 -36215321 + MER5A DNA MER1_type 55 189 0 225 0 0 0 chrX 126388552 126388577 -36211353 + (A)n Simple_repeat Simple_repeat 1 25 0 253 196 0 0 chrX 126389079 126389125 -36210805 + L1ME4a LINE L1 5569 5614 -507 276 322 25 10 chrX 126389348 126389550 -36210380 + L1ME4a LINE L1 5721 5925 -196 28 29 0 0 chrX 126390888 126390923 -36209007 + AT_rich Low_complexity Low_complexity 1 35 0 288 170 0 0 chrX 126390989 126391042 -36208888 + (TA)n Simple_repeat Simple_repeat 1 53 0 2398 72 0 25 chrX 126391748 126392066 -36207864 + AluY SINE Alu 1 310 -1 269 281 132 50 chrX 126392511 126392632 -36207298 - MIR SINE MIR -10 252 122 1492 168 99 60 chrX 126393278 126393660 -36206270 - MLT2C1 LTR ERVL 0 397 1 588 268 103 6 chrX 126393812 126394029 -36205901 - MIR SINE MIR -10 252 17 207 286 0 0 chrX 126395298 126395347 -36204583 + MIR SINE MIR 84 132 -130 2195 113 0 7 chrX 126395528 126395830 -36204100 + AluSx SINE Alu 1 300 -12 2318 106 3 0 chrX 126396716 126397018 -36202912 + AluSp SINE Alu 1 303 -10 21 0 0 0 chrX 126398895 126398916 -36201014 + AT_rich Low_complexity Low_complexity 1 21 0 206 232 18 18 chrX 126399689 126399745 -36200185 - L3b LINE CR1 0 1583 1528 217 340 97 10 chrX 126400096 126400199 -36199731 - L3b LINE CR1 -53 1530 1419 234 91 0 0 chrX 126400275 126400308 -36199622 + (GA)n Simple_repeat Simple_repeat 2 34 0 772 231 74 45 chrX 126400871 126401113 -36198817 + MIR SINE MIR 8 256 -6 582 309 67 15 chrX 126401324 126401676 -36198254 + LTR33 LTR ERVL 44 437 -84 267 247 11 45 chrX 126401779 126401868 -36198062 - L3b LINE CR1 -346 1237 1152 4157 36 0 2 chrX 126401878 126402380 -36197550 - L1PA5 LINE L1 0 6154 5654 4481 114 16 3 chrX 126402386 126403064 -36196866 - L1PA13 LINE L1 -1 6162 5476 11223 176 21 5 chrX 126403068 126404978 -36194952 - L1PA13 LINE L1 -742 5426 3473 240 59 0 0 chrX 126404978 126405012 -36194918 + (TTGG)n Simple_repeat Simple_repeat 3 36 0 11223 176 21 5 chrX 126405012 126405341 -36194589 - L1PA13 LINE L1 -2695 3473 3151 180 0 0 0 chrX 126405379 126405399 -36194531 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 1259 162 12 12 chrX 126405521 126405768 -36194162 - L1MB7 LINE L1 0 6184 5938 2119 168 29 60 chrX 126406155 126406674 -36193256 + MLT1D LTR MaLR 3 505 0 22 0 0 0 chrX 126407601 126407623 -36192307 + AT_rich Low_complexity Low_complexity 1 22 0 500 248 81 50 chrX 126408031 126408231 -36191699 - MIR SINE MIR -56 206 7 293 263 40 0 chrX 126408366 126408442 -36191488 - ORSL DNA AcHobo 0 275 197 367 176 28 102 chrX 126408726 126408834 -36191096 - MER112 DNA MER1_type -13 247 148 477 262 24 0 chrX 126409162 126409288 -36190642 + MER94 DNA DNA 3 131 -3 409 293 83 13 chrX 126409403 126409560 -36190370 + MIR SINE MIR 7 174 -88 2279 103 0 10 chrX 126409680 126409990 -36189940 + AluSq SINE Alu 1 307 -6 188 209 45 90 chrX 126410062 126410129 -36189801 + L2 LINE L2 3198 3261 -11 420 275 221 45 chrX 126410369 126410586 -36189344 + L2 LINE L2 2872 3049 -264 321 47 0 0 chrX 126410586 126410629 -36189301 + (TG)n Simple_repeat Simple_repeat 2 44 0 420 275 221 45 chrX 126410629 126410786 -36189144 + L2 LINE L2 3049 3312 -1 583 295 38 22 chrX 126411159 126411413 -36188517 + L1M4 LINE L1 3721 3975 -2171 197 32 0 32 chrX 126411614 126411645 -36188285 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 328 329 65 39 chrX 126414040 126414195 -36185735 - MIR3 SINE MIR -49 159 1 261 287 42 98 chrX 126414195 126414318 -36185612 + L3 LINE CR1 1454 1568 -9 774 181 138 25 chrX 126414484 126414644 -36185286 - MER45A DNA AcHobo 0 178 1 235 253 230 0 chrX 126416192 126416279 -36183651 - L1ME4a LINE L1 -21 6100 5994 722 166 14 14 chrX 126417495 126417640 -36182290 - L1MB8 LINE L1 -1 6177 6033 699 341 109 47 chrX 126420793 126421797 -36178133 - L2 LINE L2 -16 3256 2181 198 234 143 26 chrX 126422167 126422244 -36177686 - MIR SINE MIR -64 198 113 5173 29 0 0 chrX 126423430 126424048 -36175882 - L1PA3 LINE L1 -1102 5044 4427 7795 16 0 0 chrX 126424048 126425208 -36174722 + L1PA3 LINE L1 5014 6171 0 26 0 0 0 chrX 126426284 126426310 -36173620 + AT_rich Low_complexity Low_complexity 1 26 0 241 250 0 59 chrX 126426736 126426804 -36173126 - Charlie4 DNA MER1_type -6 1955 1892 827 295 102 36 chrX 126428359 126428752 -36171178 - L3 LINE CR1 -6 1571 1153 264 373 0 40 chrX 126428824 126428974 -36170956 - L3 LINE CR1 -1113 464 321 1417 194 82 1 chrX 126430032 126430350 -36169580 + L1MB7 LINE L1 5840 6182 -2 602 286 22 32 chrX 126432036 126432221 -36167709 - MER5A DNA MER1_type 0 189 7 220 335 62 39 chrX 126433902 126434081 -36165849 + MIR SINE MIR 54 236 -26 332 304 107 0 chrX 126434738 126434850 -36165080 - L2 LINE L2 -16 3256 3133 3631 104 135 132 chrX 126434871 126435260 -36164670 + L1MC3 LINE L1 6705 7091 -694 352 286 0 0 chrX 126435260 126435351 -36164579 + MLT1F1 LTR MaLR 35 125 -442 3631 104 135 132 chrX 126435351 126435782 -36164148 + L1MC3 LINE L1 7091 7618 -167 568 325 16 16 chrX 126435852 126436046 -36163884 + L2 LINE L2 3075 3268 -4 345 326 61 28 chrX 126436084 126436265 -36163665 - L2 LINE L2 -698 2616 2430 218 361 34 78 chrX 126436265 126436534 -36163396 - L2 LINE L2 -39 3233 2977 218 309 201 7 chrX 126436671 126436820 -36163110 - L2 LINE L2 -698 2616 2439 345 253 32 100 chrX 126437270 126437460 -36162470 - L2 LINE L2 -881 2433 2257 35 0 0 0 chrX 126437973 126438008 -36161922 + AT_rich Low_complexity Low_complexity 1 35 0 240 86 0 0 chrX 126438848 126438883 -36161047 + (TG)n Simple_repeat Simple_repeat 2 36 0 183 80 0 0 chrX 126438886 126438911 -36161019 + (CATG)n Simple_repeat Simple_repeat 2 26 0 621 238 111 11 chrX 126438964 126439225 -36160705 - L1ME4a LINE L1 0 6121 5835 201 255 0 0 chrX 126439779 126439826 -36160104 + L2 LINE L2 3267 3313 0 212 59 29 0 chrX 126441322 126441356 -36158574 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 325 235 176 10 chrX 126441515 126441617 -36158313 + MIR3 SINE MIR 69 187 -21 469 273 58 19 chrX 126441625 126441779 -36158151 - MIR SINE MIR 0 262 103 294 60 90 119 chrX 126441780 126441847 -36158083 + L1PA12 LINE L1 6099 6163 -2 186 309 0 109 chrX 126441848 126441930 -36158000 - MIR SINE MIR -164 98 29 1981 81 8 0 chrX 126441930 126442188 -36157742 - AluSg SINE Alu -6 304 45 186 309 0 109 chrX 126442188 126442215 -36157715 - MIR SINE MIR -233 29 1 484 345 122 16 chrX 126443972 126444416 -36155514 - L2 LINE L2 -1216 2098 1608 640 302 72 18 chrX 126445261 126445483 -36154447 + MIR SINE MIR 2 235 -27 199 348 21 80 chrX 126445570 126445757 -36154173 + L3 LINE CR1 1400 1575 -2 243 0 0 0 chrX 126447346 126447373 -36152557 + (T)n Simple_repeat Simple_repeat 1 27 0 781 194 5 43 chrX 126447608 126447794 -36152136 - MER97a DNA MER1_type? -715 179 1 227 297 0 0 chrX 126447803 126447867 -36152063 + L1ME4a LINE L1 5850 5913 -208 235 111 79 0 chrX 126447895 126447958 -36151972 + (TA)n Simple_repeat Simple_repeat 2 69 0 261 148 45 51 chrX 126447970 126448146 -36151784 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 391 0 114 42 chrX 126448149 126448315 -36151615 + (TA)n Simple_repeat Simple_repeat 1 178 0 316 0 90 73 chrX 126448341 126448518 -36151412 + (TA)n Simple_repeat Simple_repeat 1 180 0 333 284 5 86 chrX 126448521 126448718 -36151212 + L1ME4a LINE L1 5891 6071 -50 25 31 0 0 chrX 126449043 126449075 -36150855 + AT_rich Low_complexity Low_complexity 1 32 0 410 270 101 17 chrX 126449248 126449880 -36150050 - L1ME4a LINE L1 -107 6014 5314 421 179 113 73 chrX 126450239 126450390 -36149540 + MIR SINE MIR 92 248 -14 275 288 158 0 chrX 126450676 126450815 -36149115 + L1MC/D LINE L1 5679 5839 -1969 549 152 80 0 chrX 126450901 126451013 -36148917 - L1MB3 LINE L1 -3 6180 6060 2388 74 0 7 chrX 126451231 126451530 -36148400 + AluSg SINE Alu 4 300 -10 1961 104 0 0 chrX 126451676 126451925 -36148005 + AluSx SINE Alu 32 280 -32 207 0 0 0 chrX 126451928 126451951 -36147979 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chrX 126452010 126452033 -36147897 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 29 28 0 0 chrX 126453596 126453632 -36146298 + AT_rich Low_complexity Low_complexity 1 36 0 1615 174 0 11 chrX 126454156 126454437 -36145493 + AluJo SINE Alu 5 282 -30 369 0 0 0 chrX 126455826 126455867 -36144063 + (CA)n Simple_repeat Simple_repeat 1 41 0 258 305 125 39 chrX 126456352 126456480 -36143450 - MIR SINE MIR -46 216 78 205 173 0 161 chrX 126457007 126457088 -36142842 - L2 LINE L2 -92 3221 3154 1166 247 104 29 chrX 126457287 126457663 -36142267 - MLT1J2 LTR MaLR -46 404 1 4331 153 44 12 chrX 126457687 126458522 -36141408 - L1MA4 LINE L1 -6 6294 5433 732 288 22 60 chrX 126458886 126458954 -36140976 + MIR SINE MIR 6 75 -187 7019 62 37 10 chrX 126458954 126460224 -36139706 - L1PA13 LINE L1 0 6163 4879 732 288 22 60 chrX 126460224 126460422 -36139508 + MIR SINE MIR 75 262 0 349 327 13 13 chrX 126460645 126460795 -36139135 + L2 LINE L2 3164 3313 0 2138 101 20 3 chrX 126465002 126465298 -36134632 + AluSq SINE Alu 1 301 -12 333 286 163 0 chrX 126465318 126465416 -36134514 - MER81 DNA DNA 0 114 1 258 348 36 27 chrX 126465440 126465552 -36134378 - MIR SINE MIR -62 146 34 7762 34 2 0 chrX 126466685 126468213 -36131717 - L1PA5 LINE L1 -5 6149 4610 254 297 47 0 chrX 126468588 126468652 -36131278 + MIR3 SINE MIR 139 205 -3 435 226 38 9 chrX 126468727 126468833 -36131097 - MLT1L LTR MaLR 0 615 507 877 189 118 18 chrX 126468841 126469069 -36130861 - MLT1L LTR MaLR -364 251 1 2500 116 5 50 chrX 126469130 126469326 -36130604 - THE1B LTR MaLR 0 364 192 1885 28 0 5 chrX 126469326 126469540 -36130390 - AluY SINE Alu -12 299 87 2500 116 5 50 chrX 126469540 126469724 -36130206 - THE1B LTR MaLR -172 192 1 322 337 43 62 chrX 126471068 126471326 -36128604 - L2 LINE L2 -456 2858 2606 1221 301 83 38 chrX 126471619 126472258 -36127672 - L2 LINE L2 -889 2425 1758 205 336 80 84 chrX 126472701 126472963 -36126967 + L3b LINE CR1 1303 1563 -20 524 336 24 36 chrX 126473247 126473500 -36126430 - MIR SINE MIR 0 262 13 442 277 48 80 chrX 126474294 126474543 -36125387 - L3 LINE CR1 -61 1516 1276 741 296 17 42 chrX 126474554 126474794 -36125136 - MIR SINE MIR -27 235 2 427 239 248 28 chrX 126474794 126475012 -36124918 - L3 LINE CR1 -293 1284 1019 439 295 180 16 chrX 126475279 126475601 -36124329 - L3 LINE CR1 -606 971 597 499 278 146 15 chrX 126475652 126475857 -36124073 - MER112 DNA MER1_type -27 233 2 183 298 0 21 chrX 126475867 126475914 -36124016 - L3 LINE CR1 -1080 497 452 567 0 0 0 chrX 126476596 126476659 -36123271 + (CA)n Simple_repeat Simple_repeat 2 64 0 1843 158 3 7 chrX 126476740 126477032 -36122898 + AluJb SINE Alu 1 291 -21 213 232 18 0 chrX 126477698 126477754 -36122176 + GA-rich Low_complexity Low_complexity 1 57 0 508 294 19 10 chrX 126478462 126478655 -36121275 + MIR SINE MIR 6 207 -55 704 223 189 0 chrX 126479681 126479887 -36120043 + MIR SINE MIR 2 246 -16 221 83 28 0 chrX 126479888 126479924 -36120006 + (TTA)n Simple_repeat Simple_repeat 1 37 0 596 133 0 0 chrX 126481477 126481560 -36118370 + AluS SINE Alu 2 84 -229 2163 98 9 44 chrX 126482452 126482767 -36117163 + AluSx SINE Alu 1 304 -8 1053 210 139 50 chrX 126482767 126483016 -36116914 - LTR50 LTR ERVL -11 784 559 1582 78 0 0 chrX 126483016 126483209 -36116721 + AluY SINE Alu 106 298 -13 1053 210 139 50 chrX 126483209 126483550 -36116380 - LTR50 LTR ERVL -236 559 1 618 179 8 8 chrX 126485437 126485571 -36114359 - Charlie1 DNA MER1_type -6 2755 2622 552 225 116 0 chrX 126485593 126485722 -36114208 - Charlie1 DNA MER1_type -2600 161 18 317 278 46 64 chrX 126485733 126485906 -36114024 - MER104 DNA Tc2 0 180 11 201 354 197 0 chrX 126486074 126486221 -36113709 - L2 LINE L2 -5 3267 3092 213 94 0 0 chrX 126486383 126486415 -36113515 + (TTTAA)n Simple_repeat Simple_repeat 3 34 0 763 260 97 114 chrX 126486538 126486978 -36112952 - MLT1J LTR MaLR -12 499 67 2016 107 0 57 chrX 126486978 126487313 -36112617 + AluSx SINE Alu 1 318 0 763 260 97 114 chrX 126487313 126487379 -36112551 - MLT1J LTR MaLR -444 67 1 231 125 0 0 chrX 126487597 126487637 -36112293 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 285 308 96 29 chrX 126488659 126488763 -36111167 + L2 LINE L2 3193 3303 -10 657 351 8 12 chrX 126489124 126489375 -36110555 - MIR SINE MIR 0 262 13 236 277 0 0 chrX 126489476 126489523 -36110407 + L2 LINE L2 3150 3196 -76 352 321 50 21 chrX 126489594 126489734 -36110196 + L2 LINE L2 2624 2767 -547 966 184 11 23 chrX 126489780 126489954 -36109976 + MER20 DNA MER1_type 1 172 -47 272 310 142 61 chrX 126490076 126490386 -36109544 + L2 LINE L2 2918 3252 -20 185 194 0 0 chrX 126490657 126490688 -36109242 + L2 LINE L2 3222 3252 -20 479 240 0 0 chrX 126490794 126490898 -36109032 - MER113 DNA MER1_type? -415 106 3 201 195 24 0 chrX 126490991 126491032 -36108898 - L2 LINE L2 -18 3254 3213 * 660 234 16 47 chrX 126491003 126491195 -36108735 - MIR SINE MIR -25 237 52 180 243 0 0 chrX 126493615 126493652 -36106278 + L2 LINE L2 3203 3239 -33 450 0 0 0 chrX 126493658 126493708 -36106222 + (CA)n Simple_repeat Simple_repeat 2 51 0 615 349 15 8 chrX 126493709 126493973 -36105957 + L2 LINE L2 2509 2774 -540 1129 185 86 26 chrX 126494002 126494289 -36105641 - MSTC LTR MaLR 0 428 86 4195 121 114 10 chrX 126494289 126494672 -36105258 + L1MA5 LINE L1 5412 5754 -546 2960 118 31 5 chrX 126494672 126495088 -36104842 - MSTA LTR MaLR -1 427 1 4195 121 114 10 chrX 126495088 126495415 -36104515 + L1MA5 LINE L1 5754 6196 -104 455 114 0 91 chrX 126495415 126495503 -36104427 - MSTC LTR MaLR -316 80 1 2166 177 31 16 chrX 126495508 126495892 -36104038 - MLT1B LTR MaLR 0 390 1 504 371 24 62 chrX 126495893 126496346 -36103584 + L2 LINE L2 2832 3267 -5 927 156 52 7 chrX 126496657 126496811 -36103119 - MER5A DNA MER1_type -27 162 2 273 306 101 35 chrX 126497543 126497742 -36102188 + MIR3 SINE MIR 4 215 -47 561 266 170 5 chrX 126500633 126500821 -36099109 - MIR SINE MIR -26 236 18 4681 220 77 52 chrX 126501012 126502192 -36097738 - L2 LINE L2 0 3313 2164 2365 91 0 7 chrX 126502192 126502500 -36097430 + AluSq SINE Alu 1 306 -7 4681 220 77 52 chrX 126502500 126502599 -36097331 - L2 LINE L2 -1149 2164 2069 1703 194 27 43 chrX 126502599 126502970 -36096960 - MLT1A1 LTR MaLR 0 365 1 4681 220 77 52 chrX 126502970 126503142 -36096788 - L2 LINE L2 -1244 2069 1903 2698 183 21 0 chrX 126503142 126503612 -36096318 + L1MB7 LINE L1 5688 6167 -17 4681 220 77 52 chrX 126503612 126503836 -36096094 - L2 LINE L2 -1410 1903 1600 319 189 70 70 chrX 126504079 126504165 -36095765 - MIR SINE MIR -64 144 58 230 0 33 0 chrX 126505579 126505609 -36094321 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 285 253 110 91 chrX 126506285 126506439 -36093491 - L2 LINE L2 0 3272 3116 241 220 68 76 chrX 126506457 126506575 -36093355 + L2 LINE L2 2586 2702 -612 192 312 48 80 chrX 126507332 126507457 -36092473 + L2 LINE L2 3127 3247 -25 372 152 0 0 chrX 126508329 126508395 -36091535 + (CA)n Simple_repeat Simple_repeat 2 67 0 12530 25 6 1 chrX 126508924 126510391 -36089539 - L1P LINE L1 -743 5403 3929 5911 31 0 0 chrX 126510391 126511034 -36088896 + L1PA4 LINE L1 5506 6154 -1 213 39 0 0 chrX 126511047 126511073 -36088857 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2033 114 7 7 chrX 126511260 126511549 -36088381 + AluSx SINE Alu 1 289 -23 22 0 0 0 chrX 126511549 126511571 -36088359 + AT_rich Low_complexity Low_complexity 1 22 0 218 204 19 19 chrX 126513830 126513884 -36086046 + GA-rich Low_complexity Low_complexity 2 55 0 315 0 0 0 chrX 126514716 126514751 -36085179 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1624 171 164 36 chrX 126515552 126516027 -36083903 - LTR10A LTR ERV1 -61 548 13 2593 55 0 3 chrX 126516154 126516465 -36083465 - AluY SINE Alu -1 310 1 508 238 42 35 chrX 126517533 126517676 -36082254 - MIR3 SINE MIR -61 147 4 1718 151 0 18 chrX 126519747 126520019 -36079911 - AluJo SINE Alu -45 267 1 753 213 198 15 chrX 126520372 126520574 -36079356 - MIR SINE MIR -6 256 18 545 219 73 6 chrX 126520858 126521022 -36078908 + L1ME1 LINE L1 5987 6161 -5 186 103 0 0 chrX 126521055 126521084 -36078846 + (A)n Simple_repeat Simple_repeat 1 29 0 2203 89 14 0 chrX 126521466 126521757 -36078173 - AluY SINE Alu -16 295 1 2298 93 10 0 chrX 126521811 126522113 -36077817 + AluSg SINE Alu 1 305 -5 315 224 0 0 chrX 126522335 126522411 -36077519 - MER116 DNA Mariner -3 77 2 2345 80 3 7 chrX 126523100 126523399 -36076531 + AluSq SINE Alu 1 298 -15 1020 289 96 28 chrX 126524375 126525123 -36074807 + L1ME4a LINE L1 5310 6108 -13 310 367 14 14 chrX 126525723 126525862 -36074068 - MIR SINE MIR -48 214 76 356 152 89 0 chrX 126525990 126526069 -36073861 + L1MD3 LINE L1 7901 7986 -9 185 136 0 23 chrX 126526096 126526140 -36073790 + (CTAAA)n Simple_repeat Simple_repeat 3 45 0 980 18 0 0 chrX 126529245 126529359 -36070571 + L1PA3 LINE L1 6040 6153 -2 306 106 0 0 chrX 126530055 126530102 -36069828 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 23 33 0 0 chrX 126530786 126530816 -36069114 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrX 126532299 126532320 -36067610 + AT_rich Low_complexity Low_complexity 1 21 0 984 194 0 0 chrX 126532825 126532995 -36066935 + FRAM SINE Alu 1 170 -6 1101 295 18 91 chrX 126532995 126533570 -36066360 + L2 LINE L2 2740 3272 0 21 82 0 0 chrX 126534613 126534662 -36065268 + AT_rich Low_complexity Low_complexity 1 49 0 1962 97 56 15 chrX 126536459 126536728 -36063202 + AluSx SINE Alu 1 280 -32 333 0 0 0 chrX 126536728 126536765 -36063165 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 183 283 75 0 chrX 126537300 126537353 -36062577 + L3b LINE CR1 1401 1457 -126 271 218 0 26 chrX 126537818 126537896 -36062034 + L1MC5 LINE L1 7832 7907 -54 217 173 115 19 chrX 126538114 126538166 -36061764 + L3 LINE CR1 1516 1572 -5 23 33 0 0 chrX 126542559 126542589 -36057341 + AT_rich Low_complexity Low_complexity 1 30 0 368 96 60 0 chrX 126542896 126542979 -36056951 + A-rich Low_complexity Low_complexity 3 90 0 372 22 0 0 chrX 126544456 126544501 -36055429 + (TG)n Simple_repeat Simple_repeat 2 46 0 234 0 0 0 chrX 126544500 126544526 -36055404 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 324 0 0 0 chrX 126544525 126544561 -36055369 + (GA)n Simple_repeat Simple_repeat 2 37 0 313 296 96 22 chrX 126544873 126545008 -36054922 - MIR SINE MIR -59 203 60 1823 61 8 8 chrX 126545011 126545256 -36054674 + L1PA8 LINE L1 5926 6170 -2 21 0 0 0 chrX 126546732 126546753 -36053177 + AT_rich Low_complexity Low_complexity 1 21 0 227 191 22 45 chrX 126547139 126547228 -36052702 + T-rich Low_complexity Low_complexity 4 90 0 207 0 0 0 chrX 126549891 126549914 -36050016 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 395 218 26 55 chrX 126550994 126551118 -36048812 - MIR SINE MIR -63 145 33 1887 132 35 10 chrX 126551263 126551552 -36048378 + AluSx SINE Alu 1 296 -16 399 21 0 0 chrX 126552783 126552831 -36047099 + (TG)n Simple_repeat Simple_repeat 2 49 0 597 267 19 62 chrX 126553202 126553412 -36046518 - MIR SINE MIR -14 248 48 208 186 45 73 chrX 126554374 126554496 -36045434 + (TATAA)n Simple_repeat Simple_repeat 3 127 -47 7220 103 31 52 chrX 126554496 126554948 -36044982 - Tigger3b DNA MER2_type -1797 1231 771 1700 95 8 33 chrX 126554948 126555191 -36044739 + AluY SINE Alu 57 293 -18 7220 103 31 52 chrX 126555191 126555783 -36044147 - Tigger3b DNA MER2_type -2257 771 215 2342 117 10 0 chrX 126555783 126556092 -36043838 - AluSx SINE Alu 0 312 1 7220 103 31 52 chrX 126556092 126556303 -36043627 - Tigger3b DNA MER2_type -2813 215 1 208 186 45 73 chrX 126556303 126556357 -36043573 + (TATAA)n Simple_repeat Simple_repeat 127 174 0 1137 212 85 53 chrX 126556584 126556962 -36042968 - MLT1B LTR MaLR 0 390 1 3225 214 36 74 chrX 126556963 126558268 -36041662 - MLT1B-int LTR MaLR -1 1370 1 1497 204 60 11 chrX 126558268 126558620 -36041310 - MLT1B LTR MaLR 0 390 22 565 323 41 5 chrX 126558641 126558836 -36041094 - MIR SINE MIR -59 203 2 1440 167 69 66 chrX 126559079 126559384 -36040546 - AluJo SINE Alu -6 306 1 2201 104 0 0 chrX 126559511 126559791 -36040139 + AluSq SINE Alu 14 293 -20 645 223 50 71 chrX 126560770 126560952 -36038978 + MER5A DNA MER1_type 1 189 0 1371 121 17 0 chrX 126561510 126561750 -36038180 + L1MA8 LINE L1 5089 5332 -814 988 107 0 0 chrX 126561750 126561890 -36038040 + AluY SINE Alu 166 305 -6 5508 117 27 17 chrX 126561890 126562849 -36037081 + L1MA8 LINE L1 5323 6291 0 2075 91 5 64 chrX 126562945 126563270 -36036660 + AluSg SINE Alu 1 286 -24 3566 24 21 0 chrX 126563363 126563786 -36036144 + L1PA5 LINE L1 5718 6149 -5 26 0 0 0 chrX 126563798 126563824 -36036106 + AT_rich Low_complexity Low_complexity 1 26 0 258 275 24 4 chrX 126564647 126564832 -36035098 - MARNA DNA Mariner -39 547 290 948 217 4 61 chrX 126564951 126565214 -36034716 - MIR SINE MIR -13 249 2 25 0 0 0 chrX 126566030 126566055 -36033875 + AT_rich Low_complexity Low_complexity 1 25 0 481 279 93 57 chrX 126566212 126566545 -36033385 + L1ME4a LINE L1 4254 4598 -1548 1756 133 47 26 chrX 126566564 126566903 -36033027 - L1MA4A LINE L1 -12 6291 5946 1782 161 28 0 chrX 126566905 126567227 -36032703 + L1MA4A LINE L1 5625 5955 -348 624 292 142 30 chrX 126567297 126567797 -36032133 + L1ME4a LINE L1 4731 5286 -860 779 287 20 32 chrX 126568123 126568471 -36031459 + L1ME4a LINE L1 5485 5828 -293 500 78 108 0 chrX 126568590 126568915 -36031015 + (TA)n Simple_repeat Simple_repeat 1 359 0 272 158 57 13 chrX 126568933 126569091 -36030839 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 266 100 33 33 chrX 126569096 126569156 -36030774 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 676 36 74 23 chrX 126569157 126569554 -36030376 + (TA)n Simple_repeat Simple_repeat 1 417 0 326 256 60 0 chrX 126569685 126569802 -36030128 + L1ME4a LINE L1 5975 6098 -23 358 225 0 25 chrX 126570747 126570827 -36029103 - MIR SINE MIR -98 164 87 808 266 207 32 chrX 126570891 126571267 -36028663 - L2 LINE L2 -1 3312 2871 752 241 58 22 chrX 126571941 126572165 -36027765 - MIR SINE MIR -3 259 28 531 169 131 31 chrX 126575526 126575656 -36024274 + L2 LINE L2 3160 3302 -11 180 0 0 0 chrX 126575658 126575678 -36024252 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 243 61 0 0 chrX 126575721 126575754 -36024176 + (CA)n Simple_repeat Simple_repeat 2 34 0 448 206 65 0 chrX 126575861 126575953 -36023977 + MIR3 SINE MIR 98 195 -13 581 269 81 7 chrX 126576717 126576866 -36023064 - L2 LINE L2 -1 3271 3112 1064 280 4 0 chrX 126577114 126577371 -36022559 - MIR SINE MIR -3 259 2 286 333 39 0 chrX 126577910 126578012 -36021918 + L2 LINE L2 3141 3246 -26 312 27 0 0 chrX 126579518 126579555 -36020375 + (TAA)n Simple_repeat Simple_repeat 1 37 0 29 0 0 0 chrX 126580592 126580621 -36019309 + AT_rich Low_complexity Low_complexity 1 29 0 2157 129 0 0 chrX 126580891 126581185 -36018745 - AluSx SINE Alu -16 296 3 200 259 63 91 chrX 126581424 126581567 -36018363 + MIR SINE MIR 124 262 0 294 370 0 0 chrX 126581646 126581746 -36018184 - MIR SINE MIR -140 122 23 25 0 0 0 chrX 126584497 126584522 -36015408 + AT_rich Low_complexity Low_complexity 1 25 0 312 271 132 14 chrX 126587496 126587640 -36012290 + L1M4c LINE L1 1704 1864 -4520 2320 89 7 3 chrX 126587643 126587946 -36011984 - AluSq SINE Alu -9 304 1 1545 105 5 27 chrX 126587978 126588197 -36011733 + AluSc SINE Alu 1 214 -95 1167 298 55 61 chrX 126588241 126589016 -36010914 - L1M4 LINE L1 -5758 784 14 261 321 278 5 chrX 126589079 126589291 -36010639 + L2 LINE L2 2985 3254 -18 632 227 57 46 chrX 126591986 126592180 -36007750 - MIR SINE MIR -1 261 66 292 299 139 16 chrX 126592516 126592703 -36007227 - L1MC/D LINE L1 -2058 5684 5475 328 323 68 31 chrX 126592832 126592938 -36006992 + MER5A DNA MER1_type 18 133 -56 2301 110 0 7 chrX 126592938 126593239 -36006691 + AluSq SINE Alu 1 299 -14 328 323 68 31 chrX 126593239 126593293 -36006637 + MER5A DNA MER1_type 133 184 -5 306 278 104 20 chrX 126593886 126594161 -36005769 - L1MC/D LINE L1 -2694 3386 3082 1902 124 60 0 chrX 126594161 126594471 -36005459 - AluSx SINE Alu 0 326 1 306 278 104 20 chrX 126594471 126594493 -36005437 - L1MC/D LINE L1 -2998 3082 3063 23 0 0 0 chrX 126594505 126594528 -36005402 + AT_rich Low_complexity Low_complexity 1 23 0 978 166 11 0 chrX 126594542 126594729 -36005201 - L1PB1 LINE L1 -4 6147 5959 301 158 0 0 chrX 126594994 126595051 -36004879 + MER92C LTR ERV1 498 554 0 920 254 106 5 chrX 126595053 126595498 -36004432 - L1MC/D LINE L1 -3007 3073 2584 589 146 62 7 chrX 126595529 126595673 -36004257 + L1MC3 LINE L1 6934 7085 -700 280 301 0 10 chrX 126595673 126595776 -36004154 + MLT1F1 LTR MaLR 24 125 -442 2835 130 50 60 chrX 126595776 126596374 -36003556 + L1MD3 LINE L1 7404 7995 0 476 262 20 48 chrX 126596416 126596664 -36003266 - L1MC/D LINE L1 -3569 2511 2271 325 302 17 9 chrX 126596728 126596844 -36003086 - L1MC/D LINE L1 -5949 121 5 245 336 62 0 chrX 126597336 126597464 -36002466 + HAL1b LINE L1 59 194 -1154 2339 232 65 20 chrX 126597476 126598507 -36001423 + L1ME3A LINE L1 4868 5962 -200 1538 198 125 3 chrX 126598507 126598860 -36001070 - MSTD LTR MaLR 0 396 1 971 243 107 39 chrX 126598876 126599345 -36000585 + MLT1H LTR MaLR 9 549 0 578 211 28 106 chrX 126599346 126599564 -36000366 + L1ME3A LINE L1 5959 6159 -11 1792 194 110 19 chrX 126599608 126600071 -35999859 + MLT1D LTR MaLR 1 505 0 303 196 43 0 chrX 126600106 126600198 -35999732 - L1MB3 LINE L1 -1 6182 6087 8813 190 53 22 chrX 126600205 126601893 -35998037 - L1MA4 LINE L1 -281 6201 4566 2151 144 0 6 chrX 126601893 126602205 -35997725 + AluSx SINE Alu 1 310 -2 8813 190 53 22 chrX 126602205 126602943 -35996987 - L1MA4 LINE L1 -1916 4566 3852 2032 148 0 13 chrX 126602943 126603247 -35996683 - AluSx SINE Alu -12 300 1 8813 190 53 22 chrX 126603247 126604896 -35995034 - L1MA4 LINE L1 -2630 3852 2255 2399 80 26 0 chrX 126604896 126605198 -35994732 - AluSg SINE Alu 0 310 1 8813 190 53 22 chrX 126605198 126606991 -35992939 - L1MA4 LINE L1 -4227 2255 1 945 205 0 54 chrX 126607134 126607238 -35992692 + MER45A DNA AcHobo 2 93 -1488 2107 157 0 0 chrX 126607238 126607532 -35992398 - AluSx SINE Alu -18 294 1 945 205 0 54 chrX 126607532 126607612 -35992318 + MER45A DNA AcHobo 93 176 -2 226 308 34 0 chrX 126608054 126608171 -35991759 + MER103 DNA DNA 1 121 -45 228 67 0 0 chrX 126608475 126608505 -35991425 + (ATG)n Simple_repeat Simple_repeat 2 31 0 297 182 26 65 chrX 126608505 126608582 -35991348 - MIR SINE MIR -6 256 183 7133 42 10 7 chrX 126608615 126609689 -35990241 + L1PA6 LINE L1 5076 6152 -2 240 100 0 0 chrX 126609772 126609812 -35990118 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 1211 77 6 0 chrX 126610368 126610536 -35989394 + L1PA6 LINE L1 5837 6005 -149 2043 184 75 11 chrX 126611015 126611492 -35988438 - Charlie4a DNA MER1_type 0 508 1 970 163 0 0 chrX 126611650 126611797 -35988133 - FRAM SINE Alu -30 146 1 374 282 6 80 chrX 126612043 126612206 -35987724 + L2 LINE L2 2933 3083 -189 446 287 96 70 chrX 127012510 127012939 -35586991 - L1M4 LINE L1 -1357 4789 4350 235 305 59 25 chrX 127012971 127013089 -35586841 - L1M4 LINE L1 -2016 4130 4009 602 209 37 37 chrX 127013092 127013279 -35586651 - L1MB8 LINE L1 -2 6176 5990 5092 109 19 30 chrX 127013518 127014372 -35585558 - L1MA2 LINE L1 0 7723 6880 17677 33 0 1 chrX 127014383 127017290 -35582640 - L1PA4 LINE L1 0 6155 3250 11515 40 1 0 chrX 127017390 127018812 -35581118 - L1PA4 LINE L1 -3197 2949 1527 5590 66 0 0 chrX 127018802 127019527 -35580403 - L1PA4 LINE L1 -5418 728 4 * 1294 154 34 3 chrX 127019534 127019893 -35580037 - L1MA2 LINE L1 -745 6820 6524 * 4854 206 37 7 chrX 127019888 127021253 -35578677 - L1MA2 LINE L1 -2803 4762 3355 7908 215 69 52 chrX 127021254 127021737 -35578193 - L1MA2 LINE L1 -4303 3262 2789 229 80 20 20 chrX 127021737 127021787 -35578143 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 1941 115 0 7 chrX 127021787 127022065 -35577865 - AluSc SINE Alu -33 276 1 7908 215 69 52 chrX 127022065 127024433 -35575497 - L1MA2 LINE L1 -4775 2790 13 342 0 0 0 chrX 127024812 127024850 -35575080 + (CA)n Simple_repeat Simple_repeat 1 38 0 24 53 0 0 chrX 127025041 127025079 -35574851 + AT_rich Low_complexity Low_complexity 1 38 0 344 318 114 43 chrX 127025133 127025432 -35574498 - L1MC/D LINE L1 -2198 5610 5291 843 194 94 24 chrX 127025815 127026127 -35573803 + MLT2C2 LTR ERVL 1 404 -60 279 0 0 0 chrX 127026128 127026159 -35573771 + (TC)n Simple_repeat Simple_repeat 2 32 0 312 27 0 0 chrX 127026187 127026224 -35573706 + (CA)n Simple_repeat Simple_repeat 2 38 0 7494 103 1 1 chrX 127026234 127027259 -35572671 - THE1B-int LTR MaLR -555 1025 1 2156 139 14 19 chrX 127027259 127027625 -35572305 - THE1B LTR MaLR 0 364 1 25 65 0 0 chrX 127027998 127028044 -35571886 + AT_rich Low_complexity Low_complexity 1 46 0 323 302 0 19 chrX 127028230 127028336 -35571594 + L1ME4a LINE L1 5931 6034 -87 25 51 0 0 chrX 127028569 127028608 -35571322 + AT_rich Low_complexity Low_complexity 1 39 0 1578 250 41 56 chrX 127030053 127030585 -35569345 + L1M2 LINE L1 469 992 -6497 2082 286 30 48 chrX 127030692 127031743 -35568187 + L1M2 LINE L1 1898 2929 -4636 2866 130 0 20 chrX 127031746 127032193 -35567737 + L1PA13 LINE L1 5689 6126 -37 * 3806 238 3 64 chrX 127032191 127033153 -35566777 - L1PA14 LINE L1 -1161 4985 4083 6115 104 7 11 chrX 127033165 127034346 -35565584 + L1PA14 LINE L1 4980 6156 -5 1613 268 64 21 chrX 127034356 127035132 -35564798 + L1M2 LINE L1 2914 3724 -3841 12520 201 20 11 chrX 127035134 127038390 -35561540 + L1M2 LINE L1 3868 7158 -552 342 0 0 0 chrX 127038409 127038447 -35561483 + (TG)n Simple_repeat Simple_repeat 1 38 0 395 347 88 17 chrX 127038829 127039068 -35560862 - MIR SINE MIR 0 262 7 418 281 20 39 chrX 127039493 127039646 -35560284 + MLT1K LTR MaLR 282 431 -157 265 179 45 15 chrX 127039944 127040011 -35559919 - MER103 DNA DNA -77 89 21 739 315 63 36 chrX 127040197 127040562 -35559368 - L3 LINE CR1 -769 808 434 326 328 47 0 chrX 127040869 127040997 -35558933 - MIR SINE MIR -8 254 121 255 61 0 0 chrX 127041015 127041048 -35558882 + (CA)n Simple_repeat Simple_repeat 2 34 0 196 269 39 13 chrX 127041150 127041228 -35558702 + MIR SINE MIR 122 201 -61 393 246 42 25 chrX 127042541 127042659 -35557271 + MER103 DNA DNA 46 165 -1 204 300 17 33 chrX 127042830 127042890 -35557040 + L2 LINE L2 3213 3271 -1 228 306 118 41 chrX 127043018 127043188 -35556742 + MIR SINE MIR 71 253 -9 1801 181 40 60 chrX 127043288 127043947 -35555983 - L1 LINE L1 -3821 3744 3098 1041 265 29 63 chrX 127043948 127044058 -35555872 - MER70B LTR ERVL -181 397 285 1939 155 0 0 chrX 127044058 127044354 -35555576 + AluJb SINE Alu 1 296 -16 1041 265 29 63 chrX 127044354 127044654 -35555276 - MER70B LTR ERVL -293 285 1 3844 275 24 14 chrX 127044657 127044878 -35555052 - L1 LINE L1 -2755 3627 3410 2215 109 0 10 chrX 127044878 127045190 -35554740 - AluSc SINE Alu 0 309 1 3844 275 24 14 chrX 127045190 127046483 -35553447 - L1 LINE L1 -2972 3410 2099 2269 84 0 3 chrX 127046483 127046781 -35553149 - AluY SINE Alu -14 297 1 3844 275 24 14 chrX 127046781 127046857 -35553073 - L1 LINE L1 -4283 2099 2025 199 359 34 26 chrX 127047018 127047135 -35552795 + MIR SINE MIR 28 145 -63 228 35 0 0 chrX 127047741 127047770 -35552160 + (TC)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chrX 127047769 127047793 -35552137 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 312 281 73 43 chrX 127048850 127049014 -35550916 + L1ME3 LINE L1 5963 6131 -31 21 36 0 0 chrX 127049159 127049187 -35550743 + AT_rich Low_complexity Low_complexity 1 28 0 650 342 25 36 chrX 127049354 127049746 -35550184 + L1MA9 LINE L1 1357 1744 -5752 2420 244 28 21 chrX 127050978 127051869 -35548061 + L1MA9 LINE L1 2295 3197 -4369 284 286 36 0 chrX 127051925 127052037 -35547893 + L1MA9 LINE L1 3022 3137 -4428 * 1372 212 39 6 chrX 127052021 127052379 -35547551 + L1MA9 LINE L1 4157 4526 -3039 679 244 6 0 chrX 127052463 127052619 -35547311 - MIR SINE MIR -32 230 74 1948 147 0 3 chrX 127052656 127052955 -35546975 - AluSx SINE Alu -10 302 5 4357 208 26 4 chrX 127053090 127054139 -35545791 + L1MA9 LINE L1 4519 5590 -1975 2507 173 21 14 chrX 127054141 127054661 -35545269 + L1MA9 LINE L1 7208 7731 0 393 297 72 32 chrX 127055737 127056198 -35543732 - L1ME LINE L1 -5097 973 495 349 282 105 24 chrX 127056321 127056530 -35543400 - L1ME LINE L1 -5611 459 234 201 321 0 18 chrX 127057179 127057235 -35542695 - MIR SINE MIR -114 94 40 379 244 31 39 chrX 127057905 127058032 -35541898 - L1ME3A LINE L1 -15 6155 6030 5383 118 19 23 chrX 127058987 127060340 -35539590 - L1PA13 LINE L1 -10 6153 4789 23 0 0 0 chrX 127061738 127061761 -35538169 + AT_rich Low_complexity Low_complexity 1 23 0 42533 48 5 1 chrX 127061865 127067992 -35531938 - L1PA4 LINE L1 0 6155 4 331 286 176 5 chrX 127069180 127069370 -35530560 + L1ME LINE L1 5546 5778 -343 398 333 119 17 chrX 127070013 127070190 -35529740 - MIR SINE MIR -48 214 20 290 279 0 25 chrX 127070244 127070323 -35529607 - L2 LINE L2 -19 3253 3177 712 225 9 40 chrX 127071648 127071834 -35528096 - L1MA4 LINE L1 -3 6297 6118 2016 154 0 23 chrX 127071834 127072179 -35527751 - MER1B DNA MER1_type 0 337 1 712 225 9 40 chrX 127072179 127072219 -35527711 - L1MA4 LINE L1 -182 6118 6078 527 25 114 0 chrX 127072222 127072362 -35527568 + L1PA4 LINE L1 6066 6214 0 221 347 28 0 chrX 127072426 127072498 -35527432 + MIR SINE MIR 27 100 -162 1063 225 111 33 chrX 127072769 127073133 -35526797 + LTR50 LTR ERVL 6 340 -455 2448 93 32 3 chrX 127073133 127073478 -35526452 + THE1A LTR MaLR 1 355 0 10654 118 13 2 chrX 127073478 127075040 -35524890 + THE1A-int LTR MaLR 1 1580 0 2479 92 20 3 chrX 127075040 127075389 -35524541 + THE1A LTR MaLR 1 355 0 1063 225 111 33 chrX 127075389 127075672 -35524258 + LTR50 LTR ERVL 339 790 -5 193 100 60 80 chrX 127075702 127075752 -35524178 + MIR SINE MIR 120 168 -94 2014 164 17 12 chrX 127075807 127076300 -35523630 - L1M2 LINE L1 -673 5639 5145 43 47 0 0 chrX 127076431 127076495 -35523435 + AT_rich Low_complexity Low_complexity 1 64 0 2685 112 17 0 chrX 127076979 127077381 -35522549 - L1PB2 LINE L1 0 6151 5743 185 263 0 0 chrX 127077510 127077567 -35522363 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 32 26 0 0 chrX 127077585 127077624 -35522306 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chrX 127077880 127077916 -35522014 + AT_rich Low_complexity Low_complexity 1 36 0 614 298 34 0 chrX 127078008 127078186 -35521744 - L1ME3A LINE L1 -50 6120 5937 1998 147 0 0 chrX 127078391 127078690 -35521240 - AluSx SINE Alu -13 299 1 27 0 0 0 chrX 127078696 127078723 -35521207 + AT_rich Low_complexity Low_complexity 1 27 0 5922 13 0 6 chrX 127078723 127079409 -35520521 - L1PA2 LINE L1 0 6155 5474 3556 240 34 32 chrX 127079410 127081624 -35518306 - L1MB7 LINE L1 -13 6171 3953 237 178 0 0 chrX 127081626 127081671 -35518259 + CT-rich Low_complexity Low_complexity 3 47 0 822 99 52 12 chrX 127081705 127081877 -35518053 + CT-rich Low_complexity Low_complexity 2 180 0 2249 62 0 31 chrX 127081995 127082350 -35517580 - AluY SINE Alu 0 346 1 1698 274 43 11 chrX 127082355 127083071 -35516859 - L1MB7 LINE L1 -2939 3207 2469 910 259 98 63 chrX 127083155 127083615 -35516315 + L1M4 LINE L1 -188 287 -5993 303 247 39 0 chrX 127083638 127083715 -35516215 + L1M4 LINE L1 915 994 -5286 1639 226 23 23 chrX 127083718 127084112 -35515818 - MSTD LTR MaLR -2 394 1 6148 248 63 31 chrX 127084112 127085793 -35514137 - MSTD-int LTR MaLR 0 1735 2 1072 249 89 24 chrX 127085797 127086167 -35513763 - MSTD LTR MaLR -2 394 1 2533 261 48 19 chrX 127086177 127087369 -35512561 + L1M4 LINE L1 1001 2313 -4071 5104 23 2 3 chrX 127087487 127088115 -35511815 + L1PA2 LINE L1 5539 6165 0 1939 265 43 28 chrX 127088121 127088633 -35511297 + L1M4 LINE L1 2510 3042 -3340 1765 209 34 6 chrX 127088633 127088988 -35510942 + MLT1A1 LTR MaLR 1 365 0 1939 265 43 28 chrX 127088988 127089327 -35510603 + L1M4 LINE L1 3042 3374 -3008 16102 200 39 38 chrX 127089332 127092699 -35507231 + L1MA2 LINE L1 16 3397 -4168 192 77 0 0 chrX 127092699 127092725 -35507205 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 16102 200 39 38 chrX 127092725 127094617 -35505313 + L1MA2 LINE L1 3397 5285 -2280 1746 163 102 8 chrX 127094617 127095024 -35504906 - MER61D LTR ERV1 0 501 1 6300 157 23 68 chrX 127095030 127095675 -35504255 + L1MA2 LINE L1 5288 5961 -1762 1856 118 3 66 chrX 127095675 127095980 -35503950 + AluSx SINE Alu 1 286 -26 6300 157 23 68 chrX 127095980 127097893 -35502037 + L1MA2 LINE L1 5961 7723 0 1765 274 38 37 chrX 127097876 127098791 -35501139 + L1M4 LINE L1 3338 4253 -2129 * 792 245 62 14 chrX 127099965 127100255 -35499675 + L1 LINE L1 2868 3171 -2975 206 173 30 30 chrX 127100403 127100571 -35499359 + (TA)n Simple_repeat Simple_repeat 2 169 0 25 0 0 0 chrX 127100621 127100646 -35499284 + AT_rich Low_complexity Low_complexity 1 25 0 1873 181 18 5 chrX 127100821 127101202 -35498728 - L1PA16 LINE L1 -4 6162 5777 189 211 0 0 chrX 127101221 127101278 -35498652 + (TA)n Simple_repeat Simple_repeat 1 57 0 6780 196 37 19 chrX 127101286 127102992 -35496938 - L1PA16 LINE L1 -388 5768 4022 2363 69 7 0 chrX 127102992 127103295 -35496635 - AluY SINE Alu -6 305 1 6780 196 37 19 chrX 127103295 127103680 -35496250 - L1PA16 LINE L1 -2134 4022 3645 245 294 21 21 chrX 127103909 127104052 -35495878 - MER41B LTR ERV1 -220 415 273 1687 247 29 13 chrX 127104241 127104718 -35495212 - L1 LINE L1 -2496 3650 3166 25 31 0 0 chrX 127105358 127105390 -35494540 + AT_rich Low_complexity Low_complexity 1 32 0 375 194 0 32 chrX 127105562 127105748 -35494182 + (TA)n Simple_repeat Simple_repeat 1 180 0 390 225 0 0 chrX 127105762 127105940 -35493990 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 36 0 0 chrX 127105940 127105968 -35493962 + AT_rich Low_complexity Low_complexity 1 28 0 402 190 0 27 chrX 127105968 127106152 -35493778 + (TA)n Simple_repeat Simple_repeat 1 179 0 33 25 0 0 chrX 127106261 127106301 -35493629 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrX 127109383 127109412 -35490518 + AT_rich Low_complexity Low_complexity 1 29 0 3250 75 9 2 chrX 127109498 127109938 -35489992 - L1PA8A LINE L1 -3 6128 5686 6175 101 2 9 chrX 127109938 127111169 -35488761 + L1PA8A LINE L1 4454 5675 -456 22 35 0 0 chrX 127111316 127111345 -35488585 + AT_rich Low_complexity Low_complexity 1 29 0 1215 201 35 49 chrX 127111474 127111762 -35488168 - AluJo SINE Alu -26 286 3 4716 64 15 0 chrX 127111830 127112725 -35487205 + L1PA7 LINE L1 4968 5870 -284 418 230 88 0 chrX 127113090 127113238 -35486692 - MER96B DNA MER1_type? -24 393 233 189 0 0 0 chrX 127113395 127113416 -35486514 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1401 180 3 28 chrX 127113646 127113935 -35485995 + L1MA9 LINE L1 5994 6275 -37 5230 60 0 6 chrX 127114250 127114928 -35485002 - L1PA7 LINE L1 -2 6152 5479 7954 107 7 5 chrX 127114933 127116923 -35483007 - L1PA7 LINE L1 -2 6152 4160 26 64 0 0 chrX 127117000 127117047 -35482883 + AT_rich Low_complexity Low_complexity 1 47 0 58 28 0 0 chrX 127117163 127117235 -35482695 + AT_rich Low_complexity Low_complexity 1 72 0 444 104 0 0 chrX 127117382 127117449 -35482481 + (TC)n Simple_repeat Simple_repeat 2 68 0 402 100 0 0 chrX 127117449 127117509 -35482421 + (CA)n Simple_repeat Simple_repeat 1 60 0 358 300 41 70 chrX 127117518 127117691 -35482239 - HAL1 LINE L1 -1135 1372 1206 1845 209 44 96 chrX 127117691 127118232 -35481698 + MLT2B2 LTR ERVL 3 515 0 358 300 41 70 chrX 127118232 127118301 -35481629 - HAL1 LINE L1 -1301 1206 1137 2141 96 14 0 chrX 127118604 127118895 -35481035 - AluSg SINE Alu -15 295 1 1695 220 9 31 chrX 127119509 127119966 -35479964 - L1MB1 LINE L1 -532 5639 5193 1070 195 9 9 chrX 127119964 127120174 -35479756 + L1MB1 LINE L1 5638 5847 -321 * 421 232 174 44 chrX 127120851 127121144 -35478786 - MLT1E3 LTR MaLR -318 308 1 1831 161 32 35 chrX 127121282 127121654 -35478276 - THE1C LTR MaLR 0 375 5 26 30 0 0 chrX 127122151 127122184 -35477746 + AT_rich Low_complexity Low_complexity 1 33 0 569 313 89 13 chrX 127122245 127122469 -35477461 + MIR SINE MIR 1 241 -21 308 304 10 25 chrX 127122593 127122719 -35477211 + CT-rich Low_complexity Low_complexity 1 124 0 264 336 22 22 chrX 127122800 127122934 -35476996 - L2 LINE L2 -1303 2011 1878 19250 186 19 17 chrX 127124139 127126215 -35473715 - L1MA2 LINE L1 0 7723 5652 4634 29 13 0 chrX 127126215 127126767 -35473163 - L1PA4 LINE L1 -8 6147 5589 19250 186 19 17 chrX 127126767 127132386 -35467544 - L1MA2 LINE L1 -2071 5652 16 1232 184 17 8 chrX 127133024 127133263 -35466667 - Tigger7 DNA MER2_type 0 2491 2251 3044 192 97 2 chrX 127133269 127133846 -35466084 - Tigger7 DNA MER2_type -101 632 1 24 0 0 0 chrX 127134012 127134036 -35465894 + AT_rich Low_complexity Low_complexity 1 24 0 699 113 0 0 chrX 127135051 127135157 -35464773 - AluSp/q SINE Alu 0 313 208 746 71 31 0 chrX 127135992 127136119 -35463811 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 22 0 0 0 chrX 127136475 127136497 -35463433 + AT_rich Low_complexity Low_complexity 1 22 0 253 363 15 7 chrX 127136865 127137000 -35462930 - LTR67 LTR ERVL -4 553 418 21 0 0 0 chrX 127138206 127138227 -35461703 + AT_rich Low_complexity Low_complexity 1 21 0 1390 135 78 4 chrX 127139411 127139655 -35460275 - AluJb SINE Alu -22 290 29 23 0 0 0 chrX 127140121 127140144 -35459786 + AT_rich Low_complexity Low_complexity 1 23 0 205 205 0 0 chrX 127140679 127140718 -35459212 + (TA)n Simple_repeat Simple_repeat 1 39 0 5154 196 37 5 chrX 127141121 127142873 -35457057 + L1PA16 LINE L1 4358 6165 -1 395 338 75 6 chrX 127143014 127143174 -35456756 - L2 LINE L2 -2836 478 308 399 75 0 0 chrX 127143174 127143227 -35456703 + MADE1 DNA Mariner 1 53 -27 23 54 0 0 chrX 127143329 127143366 -35456564 + AT_rich Low_complexity Low_complexity 1 37 0 1387 267 39 28 chrX 127144313 127144744 -35455186 + L1M4 LINE L1 3 438 -6104 21828 189 21 23 chrX 127144752 127150901 -35449029 - L1PA11 LINE L1 0 6489 369 2823 219 24 7 chrX 127150906 127151620 -35448310 + L1MB7 LINE L1 5440 6165 -19 470 254 15 15 chrX 127153038 127153172 -35446758 - FLAM_C SINE Alu -7 136 3 1658 165 0 33 chrX 127153776 127154079 -35445851 - AluJb SINE Alu -19 293 1 198 0 0 0 chrX 127154149 127154171 -35445759 + (TA)n Simple_repeat Simple_repeat 1 22 0 1215 195 111 47 chrX 127154197 127154577 -35445353 - MLT1C LTR MaLR 0 467 64 21 0 0 0 chrX 127154577 127154598 -35445332 + AT_rich Low_complexity Low_complexity 1 21 0 407 277 116 0 chrX 127154678 127154790 -35445140 - L2 LINE L2 0 3272 3148 539 276 98 24 chrX 127155439 127155685 -35444245 + MER34 LTR ERV1 1 264 -278 2429 143 45 26 chrX 127155702 127156129 -35443801 - MER83 LTR ERV1 -12 436 2 782 201 53 59 chrX 127156131 127156435 -35443495 + MER34B LTR ERV1 262 563 -2 645 273 10 15 chrX 127156461 127156666 -35443264 + L1ME4a LINE L1 5636 5839 -282 21 0 0 0 chrX 127158129 127158150 -35441780 + AT_rich Low_complexity Low_complexity 1 21 0 1655 195 0 0 chrX 127158536 127158818 -35441112 - AluJb SINE Alu -24 288 7 572 53 0 0 chrX 127158821 127158943 -35440987 - L1PA2 LINE L1 0 6155 6077 2401 173 19 12 chrX 127159942 127160313 -35439617 - L1PB4 LINE L1 -3 6153 5777 2377 58 0 32 chrX 127160313 127160625 -35439305 - AluY SINE Alu -9 302 1 2401 173 19 12 chrX 127160625 127160739 -35439191 - L1PB4 LINE L1 -379 5777 5665 1451 175 27 38 chrX 127161160 127161297 -35438633 + AluJb SINE Alu 1 138 -174 234 0 0 0 chrX 127161297 127161323 -35438607 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1451 175 27 38 chrX 127161323 127161477 -35438453 + AluJb SINE Alu 138 289 -23 5857 99 7 6 chrX 127161680 127162781 -35437149 + L1P3 LINE L1 4509 5605 -549 21 0 0 0 chrX 127163310 127163331 -35436599 + AT_rich Low_complexity Low_complexity 1 21 0 284 274 59 29 chrX 127163814 127163916 -35436014 + MIR SINE MIR 13 117 -145 2279 12 0 0 chrX 127163956 127164214 -35435716 + L1PA3 LINE L1 5897 6154 -1 272 318 48 34 chrX 127164298 127164802 -35435128 + L1ME LINE L1 4316 4826 -1320 233 328 42 37 chrX 127164802 127165043 -35434887 + L1ME LINE L1 5607 5848 -273 1449 204 48 31 chrX 127165337 127165446 -35434484 + MLT1A1 LTR MaLR 3 109 -256 1927 231 19 72 chrX 127165446 127166031 -35433899 + MLT2B3 LTR ERVL 1 554 0 1449 204 48 31 chrX 127166031 127166282 -35433648 + MLT1A1 LTR MaLR 109 363 -2 2269 167 18 25 chrX 127166296 127166733 -35433197 + Tigger2a DNA MER2_type 1 434 0 23 0 0 0 chrX 127166884 127166907 -35433023 + AT_rich Low_complexity Low_complexity 1 23 0 692 321 97 48 chrX 127167310 127167632 -35432298 + L1ME4a LINE L1 5341 5646 -475 2559 121 3 0 chrX 127167632 127167995 -35431935 - THE1B LTR MaLR 0 364 1 10340 122 9 29 chrX 127167995 127169607 -35430323 - THE1B-int LTR MaLR 0 1580 1 2469 109 17 0 chrX 127169607 127169965 -35429965 - THE1B LTR MaLR 0 364 1 692 321 97 48 chrX 127169965 127170384 -35429546 + L1ME4a LINE L1 5645 6120 -1 200 143 24 0 chrX 127170856 127170898 -35429032 + T-rich Low_complexity Low_complexity 3 45 0 255 398 47 8 chrX 127171041 127171169 -35428761 + L2 LINE L2 2879 3011 -261 246 313 73 73 chrX 127171393 127171639 -35428291 - MLT1K LTR MaLR -183 405 160 1599 198 140 5 chrX 127171922 127172357 -35427573 + LTR54B LTR ERV1 3 496 -2 295 240 80 20 chrX 127173122 127173272 -35426658 - L1ME4a LINE L1 -2 6119 5961 492 298 78 16 chrX 127173307 127173552 -35426378 - MIR SINE MIR 0 262 3 1364 227 52 0 chrX 127173606 127173950 -35425980 - L1MB7 LINE L1 -8 6176 5815 607 206 22 0 chrX 127173965 127174101 -35425829 - L1MB4 LINE L1 -2 6178 6040 2750 81 55 83 chrX 127174136 127174262 -35425668 + MLT2A1 LTR ERVL 1 129 -315 2375 82 3 0 chrX 127174262 127174566 -35425364 - AluSp SINE Alu -8 305 1 2750 81 55 83 chrX 127174566 127174855 -35425075 + MLT2A1 LTR ERVL 129 404 -40 191 88 29 0 chrX 127174855 127174889 -35425041 + (TA)n Simple_repeat Simple_repeat 1 35 0 2750 81 55 83 chrX 127174889 127174929 -35425001 + MLT2A1 LTR ERVL 404 444 0 23333 85 4 1 chrX 127174929 127177994 -35421936 + HERVL-A1 LTR ERVL 1 3074 -2580 358 146 0 0 chrX 127177994 127178049 -35421881 + MLT2A1 LTR ERVL 390 444 0 386 150 17 0 chrX 127178058 127178118 -35421812 + MER21B LTR ERV1 12 72 -791 1700 256 158 44 chrX 127178159 127178746 -35421184 + MER21B LTR ERV1 19 714 -149 1888 158 24 6 chrX 127178746 127179082 -35420848 + MER61A LTR ERV1 1 342 -1 1700 256 158 44 chrX 127179082 127179251 -35420679 + MER21B LTR ERV1 714 862 -1 3512 206 42 5 chrX 127179255 127180593 -35419337 - L1MB5 LINE L1 -125 6049 4662 1534 259 40 29 chrX 127180661 127181382 -35418548 - L1MB5 LINE L1 -2392 3754 3026 391 364 27 5 chrX 127181425 127181609 -35418321 + MIR3 SINE MIR 20 207 -1 501 305 103 0 chrX 127184918 127185092 -35414838 + MIR SINE MIR 71 262 0 6759 17 0 0 chrX 127185113 127186260 -35413670 - L1PA3 LINE L1 -127 6028 4882 1055 25 0 0 chrX 127186260 127186421 -35413509 + L1PA2 LINE L1 6019 6184 0 2808 10 0 0 chrX 127186995 127187303 -35412627 + AluYa5 SINE Alu 1 308 -3 25 0 0 0 chrX 127188912 127188937 -35410993 + AT_rich Low_complexity Low_complexity 1 25 0 214 245 113 0 chrX 127189672 127189725 -35410205 - L2 LINE L2 0 3313 3255 348 91 0 0 chrX 127190055 127190099 -35409831 - U6 snRNA snRNA -63 44 1 1395 139 25 8 chrX 127190108 127190352 -35409578 + L1PA13 LINE L1 5914 6161 -2 191 250 0 131 chrX 127190464 127190548 -35409382 + L2 LINE L2 2448 2520 -794 2353 149 43 12 chrX 127190577 127190992 -35408938 + MSTA LTR MaLR 1 428 0 225 326 0 0 chrX 127191414 127191457 -35408473 + L2 LINE L2 3128 3170 -102 1640 191 7 13 chrX 127192438 127192742 -35407188 - AluJb SINE Alu -10 302 1 242 303 74 74 chrX 127192742 127192855 -35407075 - L2 LINE L2 -8 3264 3149 601 297 108 9 chrX 127192855 127193087 -35406843 - MIR SINE MIR -4 258 4 484 212 20 46 chrX 127194467 127194618 -35405312 + L1MC3 LINE L1 7637 7783 -2 34 65 0 0 chrX 127194761 127194823 -35405107 + AT_rich Low_complexity Low_complexity 1 62 0 322 255 32 0 chrX 127194854 127194948 -35404982 - L1ME LINE L1 -393 5728 5632 2507 150 22 22 chrX 127195524 127195970 -35403960 - Tigger2 DNA MER2_type 0 2718 2273 512 116 0 0 chrX 127195960 127196029 -35403901 - Tigger2 DNA MER2_type -2649 69 1 * 31 76 0 0 chrX 127196050 127196116 -35403814 + AT_rich Low_complexity Low_complexity 1 66 0 2116 118 0 13 chrX 127196505 127196809 -35403121 + AluSx SINE Alu 1 300 -12 2142 140 43 0 chrX 127196880 127197229 -35402701 - THE1B LTR MaLR 0 364 1 10401 114 39 4 chrX 127197229 127198755 -35401175 - THE1B-int LTR MaLR -1 1579 1 2069 157 25 3 chrX 127198755 127199111 -35400819 - THE1B LTR MaLR 0 364 1 1232 113 9 9 chrX 127199825 127200037 -35399893 + L1MA1 LINE L1 5961 6172 -130 269 53 0 0 chrX 127200035 127200073 -35399857 + L1MA3 LINE L1 6268 6305 0 * 21 57 0 0 chrX 127200609 127200644 -35399286 + AT_rich Low_complexity Low_complexity 1 35 0 221 290 21 21 chrX 127200863 127200956 -35398974 + MIR SINE MIR 50 142 -66 979 325 100 20 chrX 127201032 127201707 -35398223 + L2 LINE L2 2580 3313 0 21 57 0 0 chrX 127201768 127201803 -35398127 + AT_rich Low_complexity Low_complexity 1 35 0 29 70 0 0 chrX 127202280 127202337 -35397593 + AT_rich Low_complexity Low_complexity 1 57 0 329 259 177 49 chrX 127202422 127202665 -35397265 - L1M4 LINE L1 -3311 2835 2562 846 235 5 0 chrX 127202748 127202935 -35396995 - MER5A DNA MER1_type -1 188 1 388 333 60 12 chrX 127202945 127203113 -35396817 + MER5B DNA MER1_type 2 177 -1 655 230 43 64 chrX 127203402 127203637 -35396293 - MIR SINE MIR 0 262 33 669 278 158 25 chrX 127204054 127204371 -35395559 - MLT1B LTR MaLR -11 379 21 225 0 0 0 chrX 127204402 127204427 -35395503 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2105 125 0 0 chrX 127204429 127204717 -35395213 - AluSx SINE Alu -24 288 1 24 0 0 0 chrX 127205283 127205307 -35394623 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrX 127205386 127205409 -35394521 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 859 166 0 7 chrX 127205585 127205730 -35394200 + MLT1A1 LTR MaLR 1 144 -221 630 174 16 16 chrX 127205725 127205846 -35394084 + MLT1A1 LTR MaLR 245 365 0 * 1653 225 39 11 chrX 127205848 127206361 -35393569 + MLT1A1-int LTR MaLR 2 644 -1091 31 68 0 0 chrX 127206439 127206498 -35393432 + AT_rich Low_complexity Low_complexity 1 59 0 237 209 0 0 chrX 127206519 127206562 -35393368 + MLT1A1-int LTR MaLR 662 704 -1031 233 348 74 0 chrX 127206869 127207004 -35392926 + MLT1A1-int LTR MaLR 962 1106 -629 2036 238 42 2 chrX 127207114 127207546 -35392384 + MLT1A1-int LTR MaLR 1287 1735 0 623 155 0 0 chrX 127207546 127207649 -35392281 + MLT1A1 LTR MaLR 1 103 -262 411 271 103 83 chrX 127209112 127209479 -35390451 - L1ME LINE L1 -493 5628 5265 201 196 20 0 chrX 127209581 127209632 -35390298 + (TTTAA)n Simple_repeat Simple_repeat 2 53 0 6281 105 9 47 chrX 127209636 127210706 -35389224 - L1MA2 LINE L1 -16 7707 6678 * 11477 195 19 21 chrX 127210701 127214036 -35385894 - L1MA2 LINE L1 -1109 6456 3116 252 120 0 0 chrX 127214036 127214086 -35385844 + (TA)n Simple_repeat Simple_repeat 1 50 0 11477 195 19 21 chrX 127214086 127214747 -35385183 - L1MA2 LINE L1 -4449 3116 2455 2428 81 3 0 chrX 127214747 127215055 -35384875 - AluY SINE Alu -2 309 1 11477 195 19 21 chrX 127215055 127215079 -35384851 - L1MA2 LINE L1 -5110 2455 2432 1548 220 122 13 chrX 127215079 127215465 -35384465 + MSTA LTR MaLR 1 428 0 9235 144 13 34 chrX 127215465 127217078 -35382852 + MSTA-int LTR MaLR 1 1580 0 11477 195 19 21 chrX 127217078 127217096 -35382834 - L1MA2 LINE L1 -5132 2433 2416 2441 71 0 0 chrX 127217096 127217391 -35382539 - AluSg SINE Alu -15 295 1 2113 151 16 14 chrX 127217396 127217766 -35382164 - THE1C LTR MaLR -4 371 1 1669 156 128 41 chrX 127217766 127218158 -35381772 + MSTA LTR MaLR 3 428 0 11477 195 19 21 chrX 127218158 127218625 -35381305 - L1MA2 LINE L1 -5152 2413 1945 1416 186 0 104 chrX 127218625 127218952 -35380978 + AluJb SINE Alu 3 295 -17 11477 195 19 21 chrX 127218952 127219128 -35380802 - L1MA2 LINE L1 -5620 1945 1770 1738 202 6 6 chrX 127220706 127221057 -35378873 - L1MA2 LINE L1 -5795 1770 1420 7267 170 22 10 chrX 127221074 127222395 -35377535 - L1MA2 LINE L1 -6212 1353 17 1143 185 81 20 chrX 127223397 127223695 -35376235 - L1MA9 LINE L1 -351 5961 5646 1163 160 14 0 chrX 127223695 127223914 -35376016 + L1MA9 LINE L1 5415 5636 -676 671 281 20 15 chrX 127223920 127224116 -35375814 + L2 LINE L2 2437 2633 -681 23 0 0 0 chrX 127224160 127224183 -35375747 + AT_rich Low_complexity Low_complexity 1 23 0 204 158 0 0 chrX 127224895 127224933 -35374997 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 127225003 127225031 -35374899 + AT_rich Low_complexity Low_complexity 1 28 0 303 265 0 0 chrX 127226262 127226330 -35373600 - L2 LINE L2 -2 3311 3244 24 0 0 0 chrX 127226602 127226626 -35373304 + AT_rich Low_complexity Low_complexity 1 24 0 273 281 11 34 chrX 127226743 127226832 -35373098 - L2 LINE L2 -995 2319 2233 1438 241 8 5 chrX 127227063 127227437 -35372493 + L1PA10 LINE L1 8 382 -5493 17205 191 11 32 chrX 127227441 127231985 -35367945 + L1PA10 LINE L1 566 5040 -1421 11015 47 2 7 chrX 127231988 127234157 -35365773 + L1PA5 LINE L1 3962 6120 -34 497 71 0 0 chrX 127234157 127234227 -35365703 + L1PA5 LINE L1 6085 6154 0 5789 102 10 45 chrX 127234235 127235687 -35364243 + L1PA10 LINE L1 5050 6473 -10 10850 133 81 14 chrX 127235720 127236566 -35363364 + Tigger1 DNA MER2_type 2 790 -1628 2940 9 0 0 chrX 127236566 127236884 -35363046 + AluYb8 SINE Alu 1 318 0 10850 133 81 14 chrX 127236884 127238008 -35361922 + Tigger1 DNA MER2_type 790 2104 -314 590 250 0 0 chrX 127238006 127238142 -35361788 + Tigger1 DNA MER2_type 2278 2413 -5 * 774 184 0 27 chrX 127238373 127238520 -35361410 + FRAM SINE Alu 1 143 -33 180 0 0 0 chrX 127238522 127238542 -35361388 + (CA)n Simple_repeat Simple_repeat 1 20 0 602 100 0 17 chrX 127238626 127238846 -35361084 + AluSx SINE Alu 1 295 -14 291 54 0 0 chrX 127239477 127239514 -35360416 + (CA)n Simple_repeat Simple_repeat 1 37 0 721 302 54 0 chrX 127240292 127240534 -35359396 - MIR SINE MIR 0 262 8 447 194 0 0 chrX 127241386 127241479 -35358451 - MLT1H LTR MaLR 0 549 457 3467 256 29 39 chrX 127241605 127243521 -35356409 + L1PA15 LINE L1 54 2018 -4821 2481 229 25 4 chrX 127243522 127244305 -35355625 + L1PA15 LINE L1 2722 3525 -3324 5817 93 26 0 chrX 127244305 127245136 -35354794 + L1PA8 LINE L1 5317 6169 -3 897 188 12 4 chrX 127245136 127245378 -35354552 + L1MB3 LINE L1 5823 6140 -43 841 262 48 4 chrX 127245376 127245589 -35354341 + L1PA15 LINE L1 3512 3741 -3108 * 432 37 0 0 chrX 127245589 127245643 -35354287 + (CA)n Simple_repeat Simple_repeat 1 54 0 841 262 48 4 chrX 127245643 127245700 -35354230 + L1PA15 LINE L1 3741 3794 -3055 432 37 0 0 chrX 127245826 127245880 -35354050 + (CA)n Simple_repeat Simple_repeat 1 54 0 9085 190 30 5 chrX 127245883 127248930 -35351000 + L1PA15 LINE L1 3741 6867 -1 273 119 0 0 chrX 127248978 127249020 -35350910 + (TG)n Simple_repeat Simple_repeat 2 43 0 1907 288 34 21 chrX 127250174 127250339 -35349591 + L1MC/D LINE L1 4 165 -6694 1655 203 57 39 chrX 127250339 127250549 -35349381 + MLT1C LTR MaLR 1 206 -261 1620 194 0 0 chrX 127250549 127250828 -35349102 + AluJb SINE Alu 31 309 -3 1655 203 57 39 chrX 127250828 127251075 -35348855 + MLT1C LTR MaLR 206 466 -1 1907 288 34 21 chrX 127251075 127251563 -35348367 + L1MC/D LINE L1 165 733 -6126 801 265 103 0 chrX 127252051 127252372 -35347558 + L1MD3 LINE L1 7628 7981 -14 2275 202 36 9 chrX 127252751 127253310 -35346620 + L1MB7 LINE L1 5587 6160 -24 544 283 137 32 chrX 127253475 127253949 -35345981 + L1MC/D LINE L1 5436 5959 -998 279 131 82 0 chrX 127254004 127254065 -35345865 - MER53 DNA DNA -19 170 105 443 302 32 21 chrX 127254121 127254310 -35345620 + L1MC/D LINE L1 6098 6288 -687 247 296 12 0 chrX 127254347 127254428 -35345502 + L1MC/D LINE L1 6382 6463 -2156 213 237 0 0 chrX 127254446 127254505 -35345425 + (TATG)n Simple_repeat Simple_repeat 3 61 0 687 207 80 13 chrX 127255936 127256086 -35343844 - AluJb SINE Alu -24 288 129 302 258 82 93 chrX 127256426 127256620 -35343310 - HAL1 LINE L1 -1370 1137 946 240 271 0 0 chrX 127256662 127256721 -35343209 - HAL1 LINE L1 -1637 870 812 22 88 0 0 chrX 127257039 127257096 -35342834 + AT_rich Low_complexity Low_complexity 1 57 0 225 232 94 22 chrX 127257117 127257255 -35342675 - Charlie7 DNA MER1_type -2460 152 5 243 88 0 0 chrX 127257541 127257575 -35342355 + (A)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chrX 127257707 127257736 -35342194 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 127258138 127258160 -35341770 + AT_rich Low_complexity Low_complexity 1 22 0 785 171 47 6 chrX 127258440 127258610 -35341320 - L1MA3 LINE L1 -2 6303 6127 1191 127 47 5 chrX 127258610 127258816 -35341114 - L1MA3 LINE L1 0 6305 6084 3966 42 0 0 chrX 127258937 127259415 -35340515 - L1PA5 LINE L1 -2 6152 5675 2351 31 0 0 chrX 127259415 127259701 -35340229 + L1PA5 LINE L1 5384 5669 -485 524 230 96 0 chrX 127259726 127259861 -35340069 + MIR SINE MIR 54 201 -61 304 262 71 61 chrX 127260237 127260369 -35339561 + MER5A DNA MER1_type 46 178 0 1977 163 0 10 chrX 127260605 127260912 -35339018 - AluSx SINE Alu -6 306 3 229 291 10 39 chrX 127261727 127261830 -35338100 + CT-rich Low_complexity Low_complexity 3 102 0 414 153 0 0 chrX 127261849 127261921 -35338009 - MER52A LTR ERV1 0 1755 1684 * 3222 231 102 42 chrX 127261913 127262989 -35336941 - MER52A LTR ERV1 -559 1196 56 381 302 98 84 chrX 127263075 127263492 -35336438 - L1M2 LINE L1 -5766 1083 661 41746 37 22 2 chrX 127265425 127271395 -35328535 + L1PA3 LINE L1 57 6154 -1 3110 82 40 0 chrX 127271676 127271713 -35328217 - MLT2A1 LTR ERVL 0 444 410 195 69 0 0 chrX 127271713 127271742 -35328188 + (TA)n Simple_repeat Simple_repeat 1 29 0 3110 82 40 0 chrX 127271742 127272130 -35327800 - MLT2A1 LTR ERVL -34 410 2 15301 83 3 4 chrX 127272131 127272568 -35327362 - HERVL-A1 LTR ERVL 0 5654 5218 180 77 0 0 chrX 127272568 127272594 -35327336 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 15301 83 3 4 chrX 127272594 127274168 -35325762 - HERVL-A1 LTR ERVL -436 5218 3645 2826 108 24 5 chrX 127274911 127275328 -35324602 - MSTA LTR MaLR 0 428 4 197 304 11 22 chrX 127275336 127275428 -35324502 + L2 LINE L2 1854 1944 -1370 309 386 20 40 chrX 127275491 127275693 -35324237 + L2 LINE L2 2732 2929 -385 274 235 51 31 chrX 127275667 127275765 -35324165 + MIR SINE MIR 150 249 -13 * 376 253 100 65 chrX 127275768 127275938 -35323992 - MIR SINE MIR -46 216 41 1235 227 48 42 chrX 127276652 127277005 -35322925 - MLT1A1 LTR MaLR -10 355 1 902 241 97 4 chrX 127277045 127277282 -35322648 - L2 LINE L2 -523 2791 2533 396 298 0 8 chrX 127277377 127277501 -35322429 - L1MC4 LINE L1 -1018 7024 6902 1023 248 216 22 chrX 127277605 127278206 -35321724 + L1MC4a LINE L1 6059 6776 -1032 1150 326 93 6 chrX 127278212 127278442 -35321488 - L2 LINE L2 -768 2546 2337 6556 156 28 19 chrX 127278442 127278656 -35321274 + Tigger3b DNA MER2_type 3 214 -2814 2303 104 0 0 chrX 127278656 127278955 -35320975 + AluSq SINE Alu 1 299 -14 6556 156 28 19 chrX 127278955 127279958 -35319972 + Tigger3b DNA MER2_type 214 1231 0 1150 326 93 6 chrX 127279958 127280243 -35319687 - L2 LINE L2 -977 2337 1986 408 289 9 0 chrX 127281365 127281479 -35318451 - MIR SINE MIR 0 262 148 308 189 55 55 chrX 127281480 127281644 -35318286 - Charlie7 DNA MER1_type -30 2582 2419 264 300 11 0 chrX 127281617 127281707 -35318223 - Charlie7 DNA MER1_type -2516 96 6 * 618 292 98 126 chrX 127282834 127282885 -35317045 - L3 LINE CR1 -355 1222 1171 1535 203 50 89 chrX 127282885 127283369 -35316561 - MLT1C LTR MaLR -2 465 1 618 292 98 126 chrX 127283369 127284090 -35315840 - L3 LINE CR1 -406 1171 471 187 269 19 0 chrX 127284073 127284125 -35315805 - L2 LINE L2 -4 3268 3216 * 22 0 0 0 chrX 127284637 127284659 -35315271 + AT_rich Low_complexity Low_complexity 1 22 0 356 288 136 0 chrX 127285106 127285224 -35314706 + Charlie4 DNA MER1_type 4 137 -1824 423 268 66 71 chrX 127285452 127285635 -35314295 - MIR SINE MIR 0 262 81 787 145 72 12 chrX 127286335 127286501 -35313429 - L1MB3 LINE L1 -1 6182 6007 356 97 65 0 chrX 127286504 127286566 -35313364 + L1MB3 LINE L1 5946 6011 -172 246 32 0 0 chrX 127286592 127286623 -35313307 + (TC)n Simple_repeat Simple_repeat 2 32 0 221 191 15 0 chrX 127286623 127286643 -35313287 + (TA)n Simple_repeat Simple_repeat 1 19 -50 189 0 0 0 chrX 127286643 127286664 -35313266 + (CA)n Simple_repeat Simple_repeat 2 22 0 221 191 15 0 chrX 127286664 127286711 -35313219 + (TA)n Simple_repeat Simple_repeat 19 69 0 2468 199 20 64 chrX 127286747 127287751 -35312179 - L1MB3 LINE L1 -289 5894 4938 1994 205 13 57 chrX 127287782 127288313 -35311617 + L1ME1 LINE L1 5543 6050 -116 1087 84 6 18 chrX 127288323 127288489 -35311441 - L1MA5A LINE L1 0 6297 6134 918 146 50 20 chrX 127288495 127288694 -35311236 - L1MA5A LINE L1 -307 5990 5786 * 2590 239 30 11 chrX 127288680 127289443 -35310487 - L1MB3 LINE L1 -1201 4945 4168 22 35 0 0 chrX 127289545 127289574 -35310356 + AT_rich Low_complexity Low_complexity 1 29 0 311 205 51 39 chrX 127289582 127289660 -35310270 - L2 LINE L2 0 3313 3235 207 189 0 0 chrX 127290100 127290137 -35309793 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chrX 127290195 127290216 -35309714 + AT_rich Low_complexity Low_complexity 1 21 0 216 196 0 0 chrX 127290316 127290362 -35309568 + T-rich Low_complexity Low_complexity 1 46 0 1251 46 0 0 chrX 127290363 127290515 -35309415 - L1PA5 LINE L1 -8 6146 5995 1712 34 0 0 chrX 127290515 127290719 -35309211 + L1PA5 LINE L1 5754 5957 -197 625 324 44 0 chrX 127290887 127291091 -35308839 + MIR SINE MIR 50 262 0 1794 172 3 3 chrX 127291687 127291984 -35307946 + AluJb SINE Alu 3 299 -13 289 313 24 0 chrX 127292027 127292110 -35307820 - MIR3 SINE MIR -15 193 109 5674 111 12 0 chrX 127292717 127293385 -35306545 - L1PA13 LINE L1 0 6163 5481 198 0 0 0 chrX 127293385 127293407 -35306523 + (TTA)n Simple_repeat Simple_repeat 2 23 0 5674 111 12 0 chrX 127293407 127293584 -35306346 - L1PA13 LINE L1 -682 5481 5308 8336 161 23 13 chrX 127293584 127295165 -35304765 + L1P LINE L1 3338 4935 -1211 308 179 0 0 chrX 127295363 127295419 -35304511 + L1P LINE L1 4960 5015 -1131 1507 148 0 0 chrX 127295769 127296006 -35303924 - L1MA6 LINE L1 -615 5685 5449 2987 157 52 12 chrX 127296007 127296094 -35303836 + L1MA6 LINE L1 5693 5775 -525 210 26 77 0 chrX 127296094 127296133 -35303797 + (TA)n Simple_repeat Simple_repeat 2 43 0 2987 157 52 12 chrX 127296133 127296327 -35303603 + L1MA6 LINE L1 5775 5960 -340 1874 148 150 3 chrX 127296327 127296700 -35303230 - MSTA LTR MaLR 0 428 1 2987 157 52 12 chrX 127296700 127296992 -35302938 + L1MA6 LINE L1 5960 6290 -10 237 378 102 52 chrX 127298006 127298408 -35301522 + L2 LINE L2 2851 3272 0 208 375 78 26 chrX 127298403 127298635 -35301295 + L2 LINE L2 2218 2461 -853 * 246 354 34 51 chrX 127298727 127298905 -35301025 + L2 LINE L2 2598 2772 -542 181 351 0 18 chrX 127299280 127299337 -35300593 + L2 LINE L2 3138 3193 -79 25 0 0 0 chrX 127302137 127302162 -35297768 + AT_rich Low_complexity Low_complexity 1 25 0 242 317 67 17 chrX 127302502 127302622 -35297308 - L2 LINE L2 -9 3304 3179 220 378 24 24 chrX 127302925 127303052 -35296878 - L2 LINE L2 -210 3062 2936 389 345 24 12 chrX 127303193 127303358 -35296572 - MIR3 SINE MIR -1 207 41 430 283 318 0 chrX 127303431 127303629 -35296301 + MIR SINE MIR 2 262 0 4547 132 82 14 chrX 127303773 127303862 -35296068 - L1PA16 LINE L1 0 6166 6084 2603 118 23 52 chrX 127303862 127304303 -35295627 - MSTA LTR MaLR 0 428 1 4547 132 82 14 chrX 127304303 127305067 -35294863 - L1PA16 LINE L1 -82 6084 5255 3320 211 71 11 chrX 127305068 127305900 -35294030 + L1PA16 LINE L1 4375 5256 -890 7520 29 6 0 chrX 127306317 127307767 -35292163 - L1PA4 LINE L1 -1 6154 4701 4041 36 2 0 chrX 127307767 127308260 -35291670 + L1PA4 LINE L1 4204 4697 -1449 195 42 0 0 chrX 127308310 127308334 -35291596 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 245 256 33 0 chrX 127309128 127309218 -35290712 + (TG)n Simple_repeat Simple_repeat 2 94 0 240 56 0 28 chrX 127309235 127309271 -35290659 + Tigger7 DNA MER2_type 2254 2288 -203 35147 35 16 3 chrX 127309778 127315813 -35284117 + L1PA2 LINE L1 13 6155 0 25 0 0 0 chrX 127317164 127317189 -35282741 + AT_rich Low_complexity Low_complexity 1 25 0 623 287 9 32 chrX 127317390 127317606 -35282324 - MIR SINE MIR -40 222 12 254 374 40 0 chrX 127318251 127318350 -35281580 - L2 LINE L2 -15 3257 3155 182 204 0 74 chrX 127318357 127318411 -35281519 - L2 LINE L2 0 3313 3264 848 145 38 16 chrX 127318566 127318756 -35281174 + L1MA5 LINE L1 5184 5380 -766 2028 162 59 16 chrX 127318756 127319200 -35280730 + L1MA5 LINE L1 5835 6297 -3 848 145 38 16 chrX 127319200 127319213 -35280717 + L1MA5 LINE L1 5380 5391 -755 251 169 62 0 chrX 127319668 127319733 -35280197 + (TA)n Simple_repeat Simple_repeat 1 69 0 4709 29 0 0 chrX 127321310 127321858 -35278072 - L1PA3 LINE L1 -3 6152 5605 2681 21 12 0 chrX 127321858 127322193 -35277737 + L1PA3 LINE L1 5284 5622 -533 25 51 0 0 chrX 127322195 127322234 -35277696 + AT_rich Low_complexity Low_complexity 1 39 0 206 377 0 13 chrX 127322777 127322854 -35277076 - L3 LINE CR1 -5 1572 1497 267 305 11 32 chrX 127323212 127323307 -35276623 + MIR SINE MIR 1 93 -169 1294 245 117 57 chrX 127323490 127324001 -35275929 - MLT1F LTR MaLR 0 542 1 237 269 234 17 chrX 127324236 127324411 -35275519 + MIR SINE MIR 46 258 -4 201 353 0 0 chrX 127324515 127324583 -35275347 + L2 LINE L2 3201 3268 -4 204 325 77 51 chrX 127324628 127324745 -35275185 + L2 LINE L2 3193 3312 -1 253 299 52 13 chrX 127324767 127324844 -35275086 - L3 LINE CR1 -1051 526 447 459 295 92 28 chrX 127325549 127325766 -35274164 - MIR SINE MIR -13 249 19 304 357 39 74 chrX 127326171 127326507 -35273423 - L2 LINE L2 0 3272 2949 542 301 103 63 chrX 127327955 127328354 -35271576 - L2 LINE L2 -6 3307 2893 * 878 343 146 20 chrX 127328322 127329015 -35270915 - L2 LINE L2 -338 2976 2197 811 254 32 28 chrX 127329620 127329868 -35270062 - MIR SINE MIR -13 249 1 22 35 0 0 chrX 127330938 127330967 -35268963 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrX 127331889 127331919 -35268011 + AT_rich Low_complexity Low_complexity 1 30 0 651 238 29 79 chrX 127332253 127332493 -35267437 + MIR SINE MIR 34 261 -1 1677 174 14 0 chrX 127332512 127332856 -35267074 + L1MA4A LINE L1 5774 6122 -181 442 186 18 0 chrX 127332852 127332957 -35266973 + L1MA4A LINE L1 6046 6279 0 * 253 138 17 17 chrX 127332980 127333038 -35266892 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 350 286 127 98 chrX 127334510 127334881 -35265049 + L1M4 LINE L1 549 939 -5910 195 42 0 0 chrX 127334881 127334905 -35265025 + (CCG)n Simple_repeat Simple_repeat 1 24 0 350 286 127 98 chrX 127334905 127335023 -35264907 + L1M4 LINE L1 939 1052 -5797 368 54 0 36 chrX 127335033 127335089 -35264841 + (CCG)n Simple_repeat Simple_repeat 3 56 0 212 147 0 0 chrX 127336649 127336683 -35263247 + (GA)n Simple_repeat Simple_repeat 2 35 0 219 268 14 0 chrX 127337806 127337877 -35262053 + (TA)n Simple_repeat Simple_repeat 2 73 0 743 295 41 12 chrX 127338286 127338625 -35261305 - L1MC/D LINE L1 -2002 5806 5458 195 381 88 23 chrX 127338913 127339220 -35260710 - L2 LINE L2 -701 2613 2287 1744 183 0 10 chrX 127339352 127339686 -35260244 + AluJb SINE Alu 1 312 0 351 327 86 71 chrX 127340713 127341304 -35258626 + L1M4 LINE L1 4439 5038 -1810 1526 283 75 26 chrX 127341313 127342012 -35257918 - L2 LINE L2 -1 3312 2588 1333 136 0 0 chrX 127342238 127342451 -35257479 - L1PA13 LINE L1 -334 5829 5617 817 200 4 61 chrX 127342444 127342689 -35257241 + L1PA14 LINE L1 5931 6161 0 * 371 243 68 72 chrX 127342852 127343087 -35256843 + L1MC4a LINE L1 5744 5977 -1831 216 308 43 26 chrX 127343264 127343381 -35256549 - L2 LINE L2 -1318 1996 1878 236 177 97 0 chrX 127343397 127343459 -35256471 + MER103 DNA DNA 98 165 -1 11230 32 0 0 chrX 127345167 127346586 -35253344 - L1P LINE L1 -3118 3028 1610 7654 18 6 0 chrX 127346586 127347620 -35252310 + L1PA3 LINE L1 5114 6152 -3 442 281 197 0 chrX 127348305 127348483 -35251447 - MIR SINE MIR -2 260 48 328 346 50 53 chrX 127348606 127348698 -35251232 - L1ME3A LINE L1 -310 5860 5769 1020 208 98 101 chrX 127348698 127349064 -35250866 + MLT1A1 LTR MaLR 1 365 0 328 346 50 53 chrX 127349064 127349254 -35250676 - L1ME3A LINE L1 -401 5769 5579 1152 133 0 5 chrX 127349388 127349583 -35250347 + MSTA LTR MaLR 3 196 -232 22082 178 19 19 chrX 127349593 127356056 -35243874 + L1PA10 LINE L1 10 6472 -11 22 0 0 0 chrX 127356056 127356078 -35243852 + AT_rich Low_complexity Low_complexity 1 22 0 1150 170 47 8 chrX 127356082 127356317 -35243613 + MSTA LTR MaLR 185 428 0 274 161 0 0 chrX 127357030 127357086 -35242844 + L1P LINE L1 3146 3201 -2945 * 3447 165 5 3 chrX 127357084 127357745 -35242185 - L1P LINE L1 -915 5231 4570 1933 132 47 49 chrX 127357745 127358110 -35241820 + THE1B LTR MaLR 1 364 0 5936 109 11 2 chrX 127358110 127358985 -35240945 + THE1B-int LTR MaLR 1 883 -697 312 73 18 36 chrX 127358978 127359033 -35240897 - L1P LINE L1 -1595 4551 4498 * 2466 240 45 10 chrX 127359097 127359806 -35240124 + L1MDa LINE L1 816 1549 -4991 1022 291 8 3 chrX 127359861 127360218 -35239712 + L1M2c LINE L1 1330 1688 -5101 * 1632 207 3 0 chrX 127360216 127360515 -35239415 + L1PA16 LINE L1 3 302 -6547 866 124 0 29 chrX 127360957 127361094 -35238836 - L1PA8A LINE L1 0 6131 5999 262 143 0 0 chrX 127361096 127361138 -35238792 + L1PA8A LINE L1 5955 5996 -176 * 5161 223 48 25 chrX 127361133 127362389 -35237541 + L1PA16 LINE L1 288 1571 -5278 668 210 0 0 chrX 127362446 127362584 -35237346 + L1PA16 LINE L1 1391 1528 -5322 5174 264 63 35 chrX 127362986 127363187 -35236743 + L1PA16 LINE L1 1427 1621 -5228 243 0 0 0 chrX 127363187 127363214 -35236716 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5174 264 63 35 chrX 127363214 127365831 -35234099 + L1PA16 LINE L1 1621 4399 -2450 3809 189 37 48 chrX 127365810 127366696 -35233234 + L1PA16 LINE L1 5986 6861 -8 * 6363 246 70 45 chrX 127366706 127370835 -35229095 + L1M2 LINE L1 2184 6218 -1347 337 284 118 20 chrX 127370932 127371330 -35228600 + L1MC/D LINE L1 3138 3574 -2572 4670 256 27 13 chrX 127371343 127372211 -35227719 + L1MC/D LINE L1 3633 4487 -1755 1092 203 75 67 chrX 127372211 127372570 -35227360 - MLT1A1 LTR MaLR -3 362 1 4670 256 27 13 chrX 127372570 127373650 -35226280 + L1MC/D LINE L1 4487 5608 -634 576 230 22 0 chrX 127373647 127373782 -35226148 - L1 LINE L1 -784 5362 5225 * 3843 176 51 16 chrX 127373782 127374542 -35225388 + Tigger2 DNA MER2_type 1 787 -1931 1501 166 0 26 chrX 127374579 127374844 -35225086 + Tigger2 DNA MER2_type 2461 2718 0 1534 232 43 7 chrX 127374844 127375258 -35224672 - L1 LINE L1 -920 5226 4798 * 2098 136 11 3 chrX 127375257 127375611 -35224319 + L1MA6 LINE L1 5893 6249 -51 1154 171 23 0 chrX 127375679 127375895 -35224035 + L1MD1 LINE L1 6016 6236 -6 736 189 24 6 chrX 127375949 127376113 -35223817 - L1MA7 LINE L1 -2 6289 6123 1216 292 37 22 chrX 127376138 127376542 -35223388 + L1M2 LINE L1 43 452 -6397 325 339 51 8 chrX 127376869 127376987 -35222943 + L1M2 LINE L1 665 787 -6062 5985 259 36 17 chrX 127377417 127379816 -35220114 + L1M2 LINE L1 1067 3511 -3337 * 7095 183 59 27 chrX 127379815 127381154 -35218776 + L1MA2 LINE L1 1078 2465 -5100 180 0 0 0 chrX 127381154 127381174 -35218756 + (TAA)n Simple_repeat Simple_repeat 2 21 0 7095 183 59 27 chrX 127381174 127381226 -35218704 + L1MA2 LINE L1 2465 2514 -5051 6563 159 50 7 chrX 127381275 127382394 -35217536 - THE1-int LTR MaLR -413 1167 1 1979 135 65 17 chrX 127382396 127382752 -35217178 - THE1C LTR MaLR -2 373 1 6011 163 30 5 chrX 127382752 127384268 -35215662 + L1MA2 LINE L1 6163 7723 0 25 51 0 0 chrX 127384404 127384443 -35215487 + AT_rich Low_complexity Low_complexity 1 39 0 2275 141 3 24 chrX 127384535 127384574 -35215356 - THE1C LTR MaLR 0 375 337 2317 57 0 3 chrX 127384574 127384905 -35215025 + AluY SINE Alu 1 330 0 2275 141 3 24 chrX 127384905 127385247 -35214683 - THE1C LTR MaLR -38 337 1 741 263 0 0 chrX 127385300 127385479 -35214451 - MER105 DNA DNA -21 183 5 1340 266 91 42 chrX 127385850 127386445 -35213485 - MLT1E3 LTR MaLR 0 624 1 230 405 50 0 chrX 127386675 127386796 -35213134 - L2 LINE L2 -209 3063 2937 492 248 55 0 chrX 127386954 127387063 -35212867 + MER94 DNA DNA 1 115 -19 579 27 0 0 chrX 127387426 127387500 -35212430 + L1PA3 LINE L1 6082 6155 0 22 35 0 0 chrX 127388056 127388085 -35211845 + AT_rich Low_complexity Low_complexity 1 29 0 1475 216 66 44 chrX 127388826 127389302 -35210628 + MER41B LTR ERV1 157 468 -10 2604 272 38 32 chrX 127389691 127390949 -35208981 - L1ME1 LINE L1 -5 6161 4901 496 237 17 0 chrX 127390962 127391080 -35208850 - MLT1D LTR MaLR 0 505 386 42392 34 24 1 chrX 127391084 127397096 -35202834 + L1PA3 LINE L1 2 6155 0 1079 281 94 43 chrX 127397107 127397577 -35202353 - MLT1E2 LTR MaLR -131 495 2 1330 253 119 7 chrX 127397579 127398160 -35201770 - L1ME1 LINE L1 -1255 4891 4246 634 211 23 0 chrX 127398183 127398311 -35201619 + MSTC LTR MaLR 1 131 -297 602 266 14 0 chrX 127398324 127398467 -35201463 + MSTC LTR MaLR 252 396 0 2222 266 47 45 chrX 127398471 127399627 -35200303 - L1ME1 LINE L1 -1923 4223 3066 2185 257 28 15 chrX 127399644 127400515 -35199415 - L1ME1 LINE L1 -190 6045 5165 1002 259 71 9 chrX 127400527 127400947 -35198983 - L1ME1 LINE L1 -5033 1363 918 236 373 18 0 chrX 127401143 127401253 -35198677 - L2 LINE L2 -947 2367 2256 239 358 0 0 chrX 127401312 127401393 -35198537 + L2 LINE L2 3187 3267 -5 2884 127 5 13 chrX 127401639 127402087 -35197843 + MLT2A1 LTR ERVL 1 444 0 23401 97 14 10 chrX 127402087 127407129 -35192801 + HERVL-A1 LTR ERVL 1 5654 0 2717 117 2 10 chrX 127407129 127407532 -35192398 + MLT2A1 LTR ERVL 1 400 -44 405 73 0 0 chrX 127407564 127407619 -35192311 + MLT2A1 LTR ERVL 399 453 0 7113 157 11 7 chrX 127408338 127410655 -35189275 - L1MA2 LINE L1 0 6304 3977 25 51 0 0 chrX 127411199 127411238 -35188692 + AT_rich Low_complexity Low_complexity 1 39 0 5313 149 36 2 chrX 127411603 127413556 -35186374 - L1PA13 LINE L1 0 6163 4162 4490 196 11 0 chrX 127413555 127414456 -35185474 + L1PA15 LINE L1 3210 4120 -2026 1843 130 45 0 chrX 127415079 127415368 -35184562 + AluSq SINE Alu 2 302 0 529 326 74 5 chrX 127415431 127415646 -35184284 + MIR SINE MIR 21 250 -12 1459 244 28 71 chrX 127416238 127416854 -35183076 + L1ME3 LINE L1 5527 6115 -47 840 158 129 12 chrX 127416859 127417030 -35182900 - Tigger1 DNA MER2_type 0 2418 2228 1218 220 45 11 chrX 127417032 127417391 -35182539 + L1M2 LINE L1 4970 5340 -806 * 5076 146 45 6 chrX 127417369 127418494 -35181436 + L1PA15 LINE L1 4992 6155 -10 816 107 0 8 chrX 127418512 127418643 -35181287 + L1M2 LINE L1 5316 5445 -846 5100 130 19 32 chrX 127418643 127419515 -35180415 - Tigger1 DNA MER2_type -1544 874 14 241 196 0 0 chrX 127419660 127419706 -35180224 + L1MC4 LINE L1 6658 6703 -1339 393 292 0 0 chrX 127419711 127419848 -35180082 + (CATATA)n Simple_repeat Simple_repeat 5 141 0 303 202 0 43 chrX 127419848 127419942 -35179988 + L1MC4 LINE L1 6614 6703 -1339 269 200 113 0 chrX 127419949 127420029 -35179901 - L1MC4 LINE L1 -1340 6702 6614 226 122 0 0 chrX 127420049 127420090 -35179840 + LTR66 LTR ERVL 398 438 -172 22 0 0 0 chrX 127420174 127420196 -35179734 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 127420738 127420760 -35179170 + AT_rich Low_complexity Low_complexity 1 22 0 310 256 113 29 chrX 127421157 127421395 -35178535 - L1ME4a LINE L1 -5 6116 5859 28 29 0 0 chrX 127421535 127421570 -35178360 + AT_rich Low_complexity Low_complexity 1 35 0 470 267 0 26 chrX 127422393 127422509 -35177421 + L2 LINE L2 3200 3312 -1 214 214 18 0 chrX 127423186 127423242 -35176688 + (TA)n Simple_repeat Simple_repeat 2 58 0 409 307 68 22 chrX 127424030 127424218 -35175712 - MIR SINE MIR -62 146 1 31 68 0 0 chrX 127424929 127424988 -35174942 + AT_rich Low_complexity Low_complexity 1 59 0 1379 159 100 19 chrX 127425296 127425449 -35174481 - L1MA9 LINE L1 0 6312 6173 233 75 25 0 chrX 127425449 127425489 -35174441 + (TG)n Simple_repeat Simple_repeat 1 41 0 1379 159 100 19 chrX 127425489 127425656 -35174274 - L1MA9 LINE L1 -139 6173 5966 24 67 0 0 chrX 127425834 127425879 -35174051 + AT_rich Low_complexity Low_complexity 1 45 0 1288 118 145 14 chrX 127426181 127426402 -35173528 - AluSg1 SINE Alu -59 250 1 228 35 0 0 chrX 127426406 127426435 -35173495 + (GA)n Simple_repeat Simple_repeat 2 30 0 379 298 98 62 chrX 127427169 127427525 -35172405 + HAL1b LINE L1 222 590 -758 234 367 0 0 chrX 127428349 127428428 -35171502 - L2 LINE L2 0 3313 3235 372 77 0 0 chrX 127429114 127429166 -35170764 + (TG)n Simple_repeat Simple_repeat 2 53 0 27 0 0 0 chrX 127429473 127429500 -35170430 + AT_rich Low_complexity Low_complexity 1 27 0 3517 38 0 0 chrX 127429657 127430081 -35169849 - L1PA4 LINE L1 -3 6152 5729 4206 21 0 0 chrX 127430081 127430780 -35169150 + L1PA4 LINE L1 5044 5742 -413 21 0 0 0 chrX 127430784 127430805 -35169125 + AT_rich Low_complexity Low_complexity 1 21 0 1598 152 27 43 chrX 127430805 127431179 -35168751 - L1MA3 LINE L1 0 6305 5938 2322 100 0 0 chrX 127431185 127431494 -35168436 - AluSc SINE Alu 0 309 1 654 132 0 0 chrX 127431526 127431632 -35168298 - AluSc SINE Alu -3 306 201 4167 154 22 6 chrX 127431638 127432841 -35167089 - L1MA3 LINE L1 -365 5940 4718 439 153 12 0 chrX 127432841 127432926 -35167004 - L1PA15 LINE L1 -1 6164 6079 13740 182 13 6 chrX 127432946 127433893 -35166037 - L1PA15 LINE L1 -280 5888 4949 3719 194 114 133 chrX 127433893 127435682 -35164248 - MER52A LTR ERV1 0 1755 1 13740 182 13 6 chrX 127435682 127438074 -35161856 - L1PA15 LINE L1 -1219 4949 2525 9401 198 33 10 chrX 127438061 127440198 -35159732 - L1MA3 LINE L1 -1389 4757 2572 * 1647 226 17 3 chrX 127440253 127440611 -35159319 - MLT1A1 LTR MaLR -2 363 1 21 36 0 0 chrX 127441148 127441176 -35158754 + AT_rich Low_complexity Low_complexity 1 28 0 864 283 0 23 chrX 127441241 127441460 -35158470 - MIR SINE MIR -41 221 8 26 0 0 0 chrX 127442376 127442402 -35157528 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrX 127442425 127442447 -35157483 + AT_rich Low_complexity Low_complexity 1 22 0 322 323 90 15 chrX 127442538 127442671 -35157259 + L2 LINE L2 3171 3313 0 523 194 0 46 chrX 127444180 127444288 -35155642 + MIR SINE MIR 5 107 -155 399 296 14 14 chrX 127445993 127446135 -35153795 - MLT1I LTR MaLR -19 390 249 461 220 38 30 chrX 127446172 127446304 -35153626 - MLT1I LTR MaLR -275 134 2 24 53 0 0 chrX 127447380 127447418 -35152512 + AT_rich Low_complexity Low_complexity 1 38 0 489 345 23 0 chrX 127447443 127447617 -35152313 - MIR SINE MIR -65 197 20 7675 22 2 0 chrX 127448256 127449152 -35150778 + L1PA3 LINE L1 5255 6152 -3 23 0 0 0 chrX 127449192 127449215 -35150715 + AT_rich Low_complexity Low_complexity 1 23 0 441 0 0 0 chrX 127452836 127452885 -35147045 + (TA)n Simple_repeat Simple_repeat 2 50 0 262 231 272 69 chrX 127452964 127453137 -35146793 + L2 LINE L2 2320 2527 -787 351 0 0 0 chrX 127453137 127453176 -35146754 + (TC)n Simple_repeat Simple_repeat 2 40 0 342 297 0 11 chrX 127453184 127453275 -35146655 - L1MC4 LINE L1 -1339 6703 6614 671 291 91 78 chrX 127453285 127453336 -35146594 + L2 LINE L2 2534 2583 -731 2072 191 8 0 chrX 127453336 127453698 -35146232 - MLT1A1 LTR MaLR 0 365 1 671 291 91 78 chrX 127453698 127454055 -35145875 + L2 LINE L2 2583 2947 -367 219 121 48 24 chrX 127456165 127456248 -35143682 + (TA)n Simple_repeat Simple_repeat 2 86 0 248 234 13 52 chrX 127456287 127456364 -35143566 - MLT2C1 LTR ERVL -54 343 270 239 197 110 87 chrX 127456437 127456564 -35143366 - MLT1E2 LTR MaLR -375 251 122 * 667 269 24 19 chrX 127456471 127456683 -35143247 - MLT2C1 LTR ERVL -173 224 12 21 0 0 0 chrX 127456973 127456994 -35142936 + AT_rich Low_complexity Low_complexity 1 21 0 2978 83 57 7 chrX 127457621 127458044 -35141886 - MLT2A1 LTR ERVL 0 444 1 8924 76 6 0 chrX 127458044 127459186 -35140744 - HERVL-A1 LTR ERVL 0 5654 4506 2901 42 0 0 chrX 127459194 127459548 -35140382 - L1PA7 LINE L1 -13 6141 5788 4069 73 1 2 chrX 127459548 127460434 -35139496 + L1PA7 LINE L1 4893 5778 -376 4034 95 4 0 chrX 127460439 127460978 -35138952 - HERVL-A1 LTR ERVL -1143 4511 3971 27508 82 5 3 chrX 127460992 127464688 -35135242 - HERVL-A1 LTR ERVL -1958 3696 1 291 85 0 51 chrX 127464688 127464747 -35135183 - MLT2A1 LTR ERVL 0 444 389 308 283 0 22 chrX 127464753 127464845 -35135085 + L1MC4 LINE L1 6612 6701 -1341 1092 111 0 0 chrX 127464846 127465026 -35134904 + (TA)n Simple_repeat Simple_repeat 1 180 0 261 128 0 0 chrX 127465040 127465087 -35134843 - HERVL LTR ERVL -4595 1059 1013 399 210 12 19 chrX 127465087 127465249 -35134681 + (TA)n Simple_repeat Simple_repeat 1 161 0 2899 85 20 10 chrX 127465253 127465654 -35134276 - MLT2A1 LTR ERVL -39 405 1 2819 211 69 67 chrX 127465711 127466475 -35133455 + L1MCa LINE L1 19 784 -5642 667 235 0 0 chrX 127466488 127466624 -35133306 - FLAM_C SINE Alu -7 136 1 503 141 0 141 chrX 127466627 127466776 -35133154 + L1MCa LINE L1 769 896 -5011 1091 213 7 87 chrX 127466780 127467066 -35132864 + MLT1A1 LTR MaLR 101 363 -2 1487 254 61 30 chrX 127467087 127467880 -35132050 + L1MCa LINE L1 902 1670 -4758 369 0 0 0 chrX 127467880 127467921 -35132009 + (CA)n Simple_repeat Simple_repeat 2 42 0 1487 254 61 30 chrX 127467921 127467995 -35131935 + L1MCa LINE L1 1670 1740 -4688 1000 55 0 0 chrX 127467995 127468122 -35131808 + L1PA3 LINE L1 6029 6155 0 1487 254 61 30 chrX 127468122 127468165 -35131765 + L1MCa LINE L1 1740 1875 -4553 1547 253 45 9 chrX 127468227 127468988 -35130942 + L1MCa LINE L1 2057 2853 -3573 3077 143 4 4 chrX 127468988 127469485 -35130445 - MER75 DNA T2_type -17 497 1 1188 240 35 0 chrX 127469487 127469891 -35130039 + L1MCa LINE L1 3051 3468 -2958 11050 210 41 18 chrX 127469895 127472431 -35127499 + L1PA13 LINE L1 88 2692 -4105 7369 180 27 28 chrX 127472464 127474757 -35125173 + L1P3 LINE L1 3 2348 -4113 698 79 16 32 chrX 127474758 127474884 -35125046 + (GAAA)n Simple_repeat Simple_repeat 2 125 0 2863 121 5 12 chrX 127474888 127475310 -35124620 - L1P3 LINE L1 -6042 419 1 4009 205 27 23 chrX 127475330 127476794 -35123136 + L1MB2 LINE L1 4696 6165 -6 482 366 25 38 chrX 127476794 127477114 -35122816 + L2 LINE L2 2829 3144 -169 845 308 79 53 chrX 127477119 127477703 -35122227 + L2 LINE L2 2702 3301 -12 7333 42 8 31 chrX 127477916 127479368 -35120562 - L1PA5 LINE L1 -1 6153 4718 5299 39 8 0 chrX 127479368 127480010 -35119920 + L1PA5 LINE L1 4051 4697 -1449 238 288 0 0 chrX 127480331 127480404 -35119526 - MARNA DNA Mariner -345 241 169 209 380 120 6 chrX 127480492 127480650 -35119280 + MIR3 SINE MIR 30 205 -3 433 256 12 55 chrX 127481364 127481528 -35118402 + L1MCc LINE L1 14 170 -6253 13787 180 28 11 chrX 127481629 127482766 -35117164 + L1MA2 LINE L1 1649 2764 -4960 315 0 0 0 chrX 127482766 127482801 -35117129 + (CAA)n Simple_repeat Simple_repeat 2 36 0 13787 180 28 11 chrX 127482801 127482991 -35116939 + L1MA2 LINE L1 2764 2949 -4775 1547 98 39 16 chrX 127482991 127483245 -35116685 + L1PA12 LINE L1 5909 6168 0 13787 180 28 11 chrX 127483245 127487379 -35112551 + L1MA2 LINE L1 2949 7216 -508 423 0 0 0 chrX 127487379 127487426 -35112504 + (CA)n Simple_repeat Simple_repeat 2 48 0 13787 180 28 11 chrX 127487426 127487469 -35112461 + L1MA2 LINE L1 7216 7257 -467 16720 207 18 55 chrX 127487522 127495679 -35104251 - L1PA14 LINE L1 -9 7590 6 2956 123 13 0 chrX 127495695 127496167 -35103763 + L1MA2 LINE L1 7244 7721 -2 1629 266 84 26 chrX 127496184 127496901 -35103029 + L1ME1 LINE L1 3510 4267 -1879 1477 271 25 24 chrX 127496900 127497229 -35102701 + L1ME1 LINE L1 5553 5885 -281 * 1621 125 122 29 chrX 127497229 127497572 -35102358 + THE1C LTR MaLR 1 375 0 1477 271 25 24 chrX 127497572 127497752 -35102178 + L1ME1 LINE L1 5885 6063 -103 350 269 120 38 chrX 127497744 127498109 -35101821 + L1MC4a LINE L1 6315 6584 -1224 * 227 278 52 21 chrX 127498111 127498208 -35101722 - L2 LINE L2 -106 3207 3108 192 268 0 0 chrX 127498255 127498326 -35101604 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 192 125 0 0 chrX 127498335 127498367 -35101563 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 609 236 0 0 chrX 127498371 127498519 -35101411 + L1 LINE L1 4901 5048 -1098 361 357 16 0 chrX 127498521 127498647 -35101283 - L2 LINE L2 -281 3032 2905 327 49 0 0 chrX 127499033 127499074 -35100856 + (TG)n Simple_repeat Simple_repeat 2 42 0 1916 145 0 10 chrX 127499074 127499363 -35100567 - AluSx SINE Alu -26 286 1 31 26 0 0 chrX 127499435 127499473 -35100457 + AT_rich Low_complexity Low_complexity 1 38 0 1237 77 6 6 chrX 127499863 127500032 -35099898 - THE1A LTR MaLR 0 355 187 395 22 0 0 chrX 127500033 127500079 -35099851 - THE1A LTR MaLR -309 46 1 522 349 50 27 chrX 127502771 127503072 -35096858 + MLT1I LTR MaLR 102 409 0 229 362 71 56 chrX 127503159 127503355 -35096575 - L3 LINE CR1 -34 1543 1345 1163 262 27 57 chrX 127503461 127503773 -35096157 + L1M4c LINE L1 1472 1792 -4592 2121 144 0 0 chrX 127503773 127504079 -35095851 + AluSx SINE Alu 1 306 -6 1163 262 27 57 chrX 127504079 127504703 -35095227 + L1M4c LINE L1 1792 2483 -3901 927 204 105 46 chrX 127504805 127505090 -35094840 + MLT1F1 LTR MaLR 266 567 0 2000 194 28 13 chrX 127505506 127505893 -35094037 + MSTD LTR MaLR 1 393 -3 214 156 22 22 chrX 127505935 127505980 -35093950 + (TA)n Simple_repeat Simple_repeat 2 46 0 232 333 0 23 chrX 127506726 127506813 -35093117 - L2 LINE L2 0 3313 3229 3347 158 56 3 chrX 127506962 127507568 -35092362 - L1PB4 LINE L1 -1 6155 5518 1549 196 35 68 chrX 127507858 127508205 -35091725 + MLT1B LTR MaLR 1 335 -55 1703 164 87 0 chrX 127508205 127508515 -35091415 + MER1B DNA MER1_type 1 337 0 1549 196 35 68 chrX 127508515 127508566 -35091364 + MLT1B LTR MaLR 335 386 -4 194 380 11 11 chrX 127508646 127508738 -35091192 - L2 LINE L2 -492 2822 2731 830 326 62 19 chrX 127508852 127509285 -35090645 - MLT1L LTR MaLR -72 543 92 2097 105 31 0 chrX 127509291 127509577 -35090353 - AluSx SINE Alu -16 296 2 204 179 0 0 chrX 127509630 127509669 -35090261 + A-rich Low_complexity Low_complexity 1 39 0 646 304 143 39 chrX 127509731 127510145 -35089785 - L2 LINE L2 -586 2728 2272 599 165 0 0 chrX 127510195 127510292 -35089638 - MSTD LTR MaLR -299 97 1 1575 199 56 43 chrX 127510294 127510957 -35088973 - L1M4 LINE L1 -454 5730 5064 797 265 26 45 chrX 127510993 127511306 -35088624 + L1ME3 LINE L1 5785 6091 -71 264 235 0 0 chrX 127511309 127511377 -35088553 + (TA)n Simple_repeat Simple_repeat 1 68 0 1942 57 4 19 chrX 127511827 127512090 -35087840 - AluY SINE Alu -6 305 47 256 238 0 100 chrX 127512438 127512518 -35087412 - L2 LINE L2 0 3313 3242 451 329 6 24 chrX 127512541 127512705 -35087225 - L2 LINE L2 0 3313 3153 21 0 0 0 chrX 127512736 127512757 -35087173 + AT_rich Low_complexity Low_complexity 1 21 0 277 361 133 19 chrX 127514196 127514520 -35085410 - L2 LINE L2 -534 2780 2420 27 73 0 0 chrX 127515404 127515459 -35084471 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chrX 127515484 127515505 -35084425 + AT_rich Low_complexity Low_complexity 1 21 0 2620 239 38 14 chrX 127515602 127516317 -35083613 - L1M3c LINE L1 -4587 1554 823 268 292 22 11 chrX 127516420 127516509 -35083421 - L1M3c LINE L1 -5330 811 722 805 296 106 47 chrX 127516592 127517015 -35082915 - L1M3c LINE L1 -5690 451 4 241 178 89 56 chrX 127517574 127517664 -35082266 - MLT1I LTR MaLR 0 409 317 426 293 66 30 chrX 127517786 127517953 -35081977 - MLT1I LTR MaLR -207 202 30 28 0 0 0 chrX 127518097 127518125 -35081805 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chrX 127518577 127518606 -35081324 + AT_rich Low_complexity Low_complexity 1 29 0 4735 201 5 0 chrX 127518632 127519421 -35080509 - L1PA12 LINE L1 -6230 1351 559 1028 186 41 16 chrX 127519424 127519618 -35080312 - L1PA12 LINE L1 -7381 200 2 818 233 39 16 chrX 127519625 127519934 -35079996 - L1 LINE L1 -2841 4724 4409 2628 94 8 0 chrX 127519936 127520288 -35079642 + THE1A LTR MaLR 1 355 0 9176 94 14 2 chrX 127520288 127521525 -35078405 + THE1A-int LTR MaLR 1 1252 -328 5453 246 110 49 chrX 127521524 127523504 -35076426 - L1 LINE L1 -5070 2495 22 * 644 235 59 20 chrX 127523523 127523727 -35076203 + L1ME LINE L1 5052 5263 -883 1238 250 81 16 chrX 127523729 127524245 -35075685 - MER45B DNA AcHobo 0 1040 491 675 230 39 6 chrX 127524257 127524435 -35075495 + L1ME LINE L1 5391 5574 -588 294 267 84 79 chrX 127524480 127525226 -35074704 + L1M4 LINE L1 2477 3226 -2920 3784 226 32 7 chrX 127525230 127526707 -35073223 - L1M1 LINE L1 -5879 1686 71 * 6155 171 14 1 chrX 127526702 127527795 -35072135 - L1P LINE L1 -1855 4291 3185 4893 211 6 6 chrX 127527794 127528867 -35071063 + L1P LINE L1 2127 3199 -2947 * 231 271 0 0 chrX 127529063 127529122 -35070808 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 578 287 61 49 chrX 127529593 127530252 -35069678 + L1MEc LINE L1 792 1458 -4938 2488 47 0 0 chrX 127530259 127530555 -35069375 + AluY SINE Alu 2 297 -14 813 98 0 16 chrX 127530662 127530784 -35069146 + AluSp/q SINE Alu 185 304 -9 906 278 120 25 chrX 127530785 127530902 -35069028 + L1MEc LINE L1 2105 2209 -4006 1882 225 60 58 chrX 127530902 127531453 -35068477 + MLT2B3 LTR ERVL 3 554 0 906 278 120 25 chrX 127531453 127532490 -35067440 + L1MEc LINE L1 2209 3335 -2880 1745 199 48 2 chrX 127532620 127533053 -35066877 - L1M4c LINE L1 -1489 5155 4703 4324 181 17 18 chrX 127533055 127533792 -35066138 + L1MA9 LINE L1 4618 5363 -949 2583 56 0 0 chrX 127533792 127534095 -35065835 + AluY SINE Alu 1 303 -8 4324 181 17 18 chrX 127534095 127534813 -35065117 + L1MA9 LINE L1 5363 6081 -231 422 192 58 25 chrX 127534817 127534937 -35064993 + L1MA9 LINE L1 6182 6305 -7 * 717 218 11 6 chrX 127534931 127535105 -35064825 + L1M4 LINE L1 4747 4921 -1225 * 996 202 68 27 chrX 127535094 127535430 -35064500 + L1MC4a LINE L1 6927 7276 -532 733 259 19 9 chrX 127535432 127535648 -35064282 - L1M4c LINE L1 -1914 4730 4513 1954 127 0 0 chrX 127535667 127535959 -35063971 + L1PA8 LINE L1 5865 6156 -16 791 246 0 21 chrX 127536003 127536190 -35063740 - MLT1A1 LTR MaLR 0 365 183 1106 214 17 0 chrX 127536193 127536431 -35063499 - L1M4c LINE L1 -2217 4427 4186 733 152 11 38 chrX 127536441 127536625 -35063305 + CT-rich Low_complexity Low_complexity 1 179 0 4168 229 31 8 chrX 127536626 127537803 -35062127 - L1M4c LINE L1 -2451 4193 2990 232 250 0 0 chrX 127537804 127537856 -35062074 + LTR30 LTR ERV1 1 52 -670 3236 88 169 150 chrX 127537858 127538818 -35061112 + LTR12 LTR ERV1 57 712 -2 2128 222 100 26 chrX 127538818 127539608 -35060322 - L1PBa LINE L1 -3650 3212 2362 * 5485 40 0 0 chrX 127539607 127540276 -35059654 + L1P LINE L1 4498 5166 -980 1627 186 46 3 chrX 127540279 127540649 -35059281 - L1PBa LINE L1 -4511 2352 1967 * 5375 232 77 56 chrX 127540640 127543231 -35056699 - L1M4c LINE L1 -3986 2660 1 25 51 0 0 chrX 127543358 127543397 -35056533 + AT_rich Low_complexity Low_complexity 1 39 0 667 317 5 14 chrX 127543420 127543641 -35056289 + MIR SINE MIR 42 260 -2 2090 201 69 0 chrX 127544079 127544502 -35055428 + LTR47A LTR ERVL 1 452 0 384 22 0 0 chrX 127544512 127544557 -35055373 + (CA)n Simple_repeat Simple_repeat 1 45 0 257 371 21 10 chrX 127545472 127545569 -35054361 - L2 LINE L2 -16 3297 3200 390 267 0 82 chrX 127545604 127545739 -35054191 - MIR SINE MIR -121 141 18 197 65 32 0 chrX 127546024 127546055 -35053875 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 333 403 71 0 chrX 127546488 127546684 -35053246 + L1ME LINE L1 236 445 -5625 617 264 39 46 chrX 127546875 127547208 -35052722 + L1ME LINE L1 533 861 -5217 3737 146 84 21 chrX 127547220 127547966 -35051964 - L1MA7 LINE L1 0 6291 5499 772 223 61 54 chrX 127547962 127548258 -35051672 + L1ME LINE L1 845 1142 -4938 * 198 318 171 47 chrX 127548997 127549126 -35050804 - L2 LINE L2 -212 3060 2916 21 0 0 0 chrX 127549457 127549478 -35050452 + AT_rich Low_complexity Low_complexity 1 21 0 1996 189 78 2 chrX 127550085 127550481 -35049449 - MSTB LTR MaLR 0 426 1 24 0 0 0 chrX 127550498 127550522 -35049408 + AT_rich Low_complexity Low_complexity 1 24 0 695 295 13 18 chrX 127550796 127551020 -35048910 - MER115 DNA AcHobo -1 692 470 1582 222 18 31 chrX 127551090 127551551 -35048379 + MER89 LTR ERV1 1 554 -5 566 362 152 16 chrX 127551570 127551885 -35048045 - MER115 DNA AcHobo -317 376 19 285 267 56 15 chrX 127553657 127553767 -35046163 + MIR SINE MIR 41 151 -67 222 198 47 0 chrX 127554090 127554176 -35045754 + CT-rich Low_complexity Low_complexity 2 91 0 381 351 72 26 chrX 127554340 127554825 -35045105 - L2 LINE L2 -432 2882 2315 2601 147 29 0 chrX 127554852 127555268 -35044662 + MSTA LTR MaLR 1 428 0 304 298 124 16 chrX 127555483 127555604 -35044326 + L2 LINE L2 3180 3313 0 413 267 69 0 chrX 127555761 127555877 -35044053 + L2 LINE L2 3190 3313 0 721 351 151 19 chrX 127555916 127556616 -35043314 - L3 LINE CR1 -304 1273 481 1459 0 0 0 chrX 127556640 127556803 -35043127 - L1HS LINE L1 0 6155 5993 246 320 27 0 chrX 127556953 127557028 -35042902 - L3 LINE CR1 -1118 459 383 1815 175 16 93 chrX 127557462 127557865 -35042065 + MSTB1 LTR MaLR 1 365 -67 2331 115 0 0 chrX 127557865 127558178 -35041752 - AluSq SINE Alu 0 313 1 1815 175 16 93 chrX 127558178 127558229 -35041701 + MSTB1 LTR MaLR 365 418 -14 2569 193 46 48 chrX 127558870 127559501 -35040429 + LTR27 LTR ERV1 2 631 -5 352 275 94 43 chrX 127559502 127559684 -35040246 + LTR27-int LTR ERV1 6 161 -6835 4366 198 125 41 chrX 127559722 127560866 -35039064 + LTR27-int LTR ERV1 408 1792 -5413 260 149 0 104 chrX 127560834 127560901 -35039029 + LTR27-int LTR ERV1 2179 2238 -5180 * 2029 133 3 3 chrX 127560926 127561220 -35038710 - AluSc SINE Alu -15 294 1 414 203 0 14 chrX 127561221 127561295 -35038635 + LTR28-int LTR ERV1 3923 3995 -885 4104 151 51 19 chrX 127561316 127562983 -35036947 + LTR28-int LTR ERV1 632 1872 -3345 505 125 10 10 chrX 127562984 127563080 -35036850 + L1PA10 LINE L1 5235 5330 -816 * 1457 33 4 0 chrX 127563079 127564595 -35035335 + L1PA4 LINE L1 4383 6043 -125 5249 130 15 1 chrX 127564601 127565419 -35034511 + L1PA10 LINE L1 5317 6145 -23 12334 162 29 19 chrX 127565419 127568104 -35031826 + LTR28-int LTR ERV1 3253 6992 -4 877 149 43 0 chrX 127568117 127568258 -35031672 + LTR28 LTR ERV1 10 156 -864 2237 215 15 49 chrX 127568400 127569056 -35030874 + LTR27 LTR ERV1 2 635 -1 413 277 109 22 chrX 127569326 127569463 -35030467 - MIR SINE MIR -30 232 84 242 28 0 28 chrX 127569509 127569545 -35030385 + (TG)n Simple_repeat Simple_repeat 2 36 0 353 172 0 0 chrX 127570584 127570642 -35029288 + MER50 LTR ERV1 59 116 -618 * 1057 179 0 11 chrX 127570631 127570821 -35029109 + MER50 LTR ERV1 547 734 0 23 0 0 0 chrX 127570904 127570927 -35029003 + AT_rich Low_complexity Low_complexity 1 23 0 11242 31 0 4 chrX 127571123 127573231 -35026699 + L1PA3 LINE L1 4048 6152 -3 203 250 33 11 chrX 127573798 127573890 -35026040 + (TA)n Simple_repeat Simple_repeat 2 95 0 235 102 20 20 chrX 127573917 127573966 -35025964 + (TA)n Simple_repeat Simple_repeat 2 50 0 11642 196 16 8 chrX 127574344 127576809 -35023121 + L1PA13 LINE L1 1939 4422 -1724 * 29620 115 13 22 chrX 127576808 127583235 -35016695 + L1PA8 LINE L1 6 6476 -11 5499 115 40 6 chrX 127583238 127584976 -35014954 + L1PA13 LINE L1 4398 6162 -1 3765 183 9 65 chrX 127584999 127585886 -35014044 - L1PA16 LINE L1 -7 6159 5323 331 307 108 62 chrX 127585904 127586608 -35013322 + HAL1b LINE L1 58 793 -555 22 0 0 0 chrX 127586646 127586668 -35013262 + AT_rich Low_complexity Low_complexity 1 22 0 1208 204 24 16 chrX 127586835 127587090 -35012840 + AluJo SINE Alu 1 257 -55 328 144 58 23 chrX 127587270 127587443 -35012487 + (TA)n Simple_repeat Simple_repeat 1 179 0 1159 247 70 52 chrX 127587486 127587666 -35012264 + L1MC5 LINE L1 6583 6758 -1203 369 109 0 0 chrX 127587666 127587721 -35012209 + (TA)n Simple_repeat Simple_repeat 1 55 0 1159 247 70 52 chrX 127587721 127588076 -35011854 + L1MC5 LINE L1 6758 7130 -831 1940 114 3 43 chrX 127588076 127588375 -35011555 + AluSx SINE Alu 1 287 -25 2806 169 34 11 chrX 127588477 127589029 -35010901 + MER34B LTR ERV1 1 565 0 1582 186 24 54 chrX 127589443 127589776 -35010154 + MLT1A1 LTR MaLR 1 323 -42 281 191 0 0 chrX 127590381 127590428 -35009502 + MLT1A1 LTR MaLR 328 374 0 6064 207 33 23 chrX 127591040 127592018 -35007912 - L1 LINE L1 -1470 4676 3676 827 89 0 8 chrX 127592018 127592141 -35007789 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 6064 207 33 23 chrX 127592141 127592747 -35007183 - L1 LINE L1 -2470 3676 3077 1389 293 5 2 chrX 127592749 127593152 -35006778 + L1PBa LINE L1 1236 1639 -5224 * 4331 171 51 5 chrX 127593121 127594267 -35005663 + L1PBb LINE L1 5 1276 -4928 844 93 33 0 chrX 127594267 127594417 -35005513 + (TA)n Simple_repeat Simple_repeat 2 156 0 4331 171 51 5 chrX 127594417 127594690 -35005240 + L1PBb LINE L1 1276 1535 -4669 222 175 29 48 chrX 127594708 127594811 -35005119 + T-rich Low_complexity Low_complexity 5 105 0 1468 216 27 86 chrX 127596338 127596726 -35003204 + MLT2D LTR ERVL 1 362 -52 315 0 0 0 chrX 127596726 127596761 -35003169 + (CA)n Simple_repeat Simple_repeat 2 36 0 1468 216 27 86 chrX 127596761 127596812 -35003118 + MLT2D LTR ERVL 362 414 0 9652 206 37 27 chrX 127596868 127598481 -35001449 + L1PA16 LINE L1 942 2590 -4259 216 0 0 0 chrX 127598481 127598505 -35001425 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 9652 206 37 27 chrX 127598505 127599394 -35000536 + L1PA16 LINE L1 2590 3469 -3380 4017 198 51 15 chrX 127599398 127600649 -34999281 + L1PA16 LINE L1 5568 6860 -9 26 64 0 0 chrX 127601374 127601421 -34998509 + AT_rich Low_complexity Low_complexity 1 47 0 787 354 55 32 chrX 127601566 127602134 -34997796 + L1PA13 LINE L1 788 1368 -6206 258 306 0 0 chrX 127602316 127602388 -34997542 + L1PA13 LINE L1 2111 2182 -5399 756 241 9 18 chrX 127602560 127602780 -34997150 + L1PA13 LINE L1 3335 3552 -4032 * 3565 244 91 21 chrX 127602764 127604445 -34995485 + L1PA16 LINE L1 1941 3695 -3154 982 169 32 0 chrX 127604491 127604680 -34995250 + L1PB1 LINE L1 6 200 -6663 13368 167 58 15 chrX 127604682 127606036 -34993894 + L1PB1 LINE L1 636 1931 -4936 2376 90 0 0 chrX 127606036 127606337 -34993593 + AluSx SINE Alu 1 301 -11 13368 167 58 15 chrX 127606337 127610956 -34988974 + L1PB1 LINE L1 1931 6865 -2 506 255 34 41 chrX 127610973 127611240 -34988690 + L1 LINE L1 3028 3292 -2854 7236 228 27 12 chrX 127611252 127614157 -34985773 + L1PA16 LINE L1 3915 6859 -10 645 209 0 8 chrX 127614287 127614421 -34985509 + L1PA15 LINE L1 6031 6163 -2 184 294 69 78 chrX 127614938 127615040 -34984890 + MIR3 SINE MIR 95 195 -13 389 338 168 0 chrX 127615224 127615558 -34984372 + L2 LINE L2 1567 1956 -1358 1647 195 56 11 chrX 127615666 127616025 -34983905 - THE1C LTR MaLR 0 375 1 8136 146 83 24 chrX 127616025 127616351 -34983579 - THE1C-int LTR MaLR 0 1580 1275 1911 154 3 0 chrX 127616351 127616636 -34983294 + AluSx SINE Alu 1 286 -26 8136 146 83 24 chrX 127616636 127617798 -34982132 - THE1C-int LTR MaLR -305 1275 4 1858 162 56 8 chrX 127617801 127618159 -34981771 - THE1C LTR MaLR 0 375 1 393 225 56 0 chrX 127618175 127618264 -34981666 - MIR SINE MIR -105 157 64 325 159 0 32 chrX 127618336 127618399 -34981531 + L1PA5 LINE L1 6088 6148 -6 687 200 63 6 chrX 127618410 127618585 -34981345 - L1MCa LINE L1 -4199 2227 2043 747 291 50 5 chrX 127618670 127618890 -34981040 + MIR SINE MIR 20 249 -13 4795 197 47 27 chrX 127619204 127620334 -34979596 + L1MC1 LINE L1 5186 6329 -4 831 125 35 0 chrX 127620351 127620495 -34979435 - L1MA5A LINE L1 -1 6296 6148 23 33 0 0 chrX 127620550 127620580 -34979350 + AT_rich Low_complexity Low_complexity 1 30 0 1138 271 44 54 chrX 127621022 127621593 -34978337 + L1M4 LINE L1 39 603 -5939 * 17786 206 68 19 chrX 127621589 127626271 -34973659 + L1MA2 LINE L1 9 5274 -2449 2225 101 0 0 chrX 127626271 127626582 -34973348 + AluSq SINE Alu 1 311 0 17786 206 68 19 chrX 127626582 127628659 -34971271 + L1MA2 LINE L1 5274 7248 -475 684 317 5 14 chrX 127629367 127629588 -34970342 - MIR SINE MIR -2 260 42 25 51 0 0 chrX 127629611 127629650 -34970280 + AT_rich Low_complexity Low_complexity 1 39 0 4876 238 75 60 chrX 127629777 127632385 -34967545 + L1M4 LINE L1 1 2660 -3986 1608 187 49 3 chrX 127632376 127632745 -34967185 + L1PBa LINE L1 1967 2352 -4511 * 6450 33 0 0 chrX 127632748 127633532 -34966398 - L1P LINE L1 -980 5166 4383 506 125 10 10 chrX 127633531 127633627 -34966303 - L1P LINE L1 -816 5330 5235 * 3416 172 62 12 chrX 127633628 127634534 -34965396 - MER57-int LTR ERV1 -2384 4612 1213 180 0 0 0 chrX 127634617 127634637 -34965293 + (G)n Simple_repeat Simple_repeat 1 20 0 955 144 20 77 chrX 127634940 127635168 -34964762 - MER57-int LTR ERV1 -4152 2386 674 3942 274 54 20 chrX 127685206 127687172 -34912758 - L1M2 LINE L1 -2982 3866 1790 * 5554 224 5 13 chrX 127687145 127688245 -34911685 - L1PA15-16 LINE L1 -5758 1091 1 504 265 224 5 chrX 127689001 127689197 -34910733 - MIR SINE MIR -21 241 3 750 291 28 32 chrX 127689587 127689838 -34910092 - MIR SINE MIR -10 252 3 1393 224 0 7 chrX 127689969 127690263 -34909667 + AluJb SINE Alu 5 296 -16 1563 215 3 3 chrX 127690641 127690952 -34908978 - L1PA15-16 LINE L1 -6403 446 136 238 273 73 0 chrX 127692188 127692243 -34907687 + L2 LINE L2 3213 3271 -1 233 147 0 0 chrX 127692359 127692393 -34907537 - MSTA LTR MaLR 0 428 395 2174 86 4 0 chrX 127692435 127692760 -34907170 + AluSp SINE Alu 6 331 0 1844 120 180 9 chrX 127692760 127693093 -34906837 - MSTA LTR MaLR -38 390 1 962 156 76 5 chrX 127693131 127693342 -34906588 - L1MA7 LINE L1 -1833 4313 4088 * 5094 175 71 21 chrX 127693339 127694650 -34905280 + L1MA7 LINE L1 4306 5742 -549 2023 127 0 0 chrX 127694650 127694969 -34904961 - AluSx SINE Alu 0 320 2 5094 175 71 21 chrX 127694969 127695548 -34904382 + L1MA7 LINE L1 5742 6291 0 282 294 98 10 chrX 127695659 127695761 -34904169 - MER5A DNA MER1_type -40 146 28 371 268 87 55 chrX 127696023 127696464 -34903466 + L1MC/D LINE L1 5258 5717 -598 2618 273 83 41 chrX 127696772 127696924 -34903006 + L1ME2 LINE L1 111 255 -5825 574 283 56 15 chrX 127696924 127697122 -34902808 - MER63A DNA MER1_type 0 210 5 2618 273 83 41 chrX 127697122 127699807 -34900123 + L1ME2 LINE L1 255 3087 -2993 1706 120 73 4 chrX 127699807 127700081 -34899849 + AluSx SINE Alu 5 297 -15 2618 273 83 41 chrX 127700081 127700419 -34899511 + L1ME2 LINE L1 3087 3409 -2671 3515 259 106 15 chrX 127700429 127702275 -34897655 + L1ME2 LINE L1 3574 5597 -501 721 246 36 32 chrX 127702273 127702554 -34897376 + L1ME2 LINE L1 5814 6095 -3 * 38 68 0 0 chrX 127703391 127703464 -34896466 + AT_rich Low_complexity Low_complexity 1 73 0 44233 38 1 1 chrX 127703767 127709919 -34890011 - L1PA3 LINE L1 -3 6152 7 246 325 46 62 chrX 127710440 127710634 -34889296 + MIR SINE MIR 22 212 -50 225 349 63 8 chrX 127710921 127711047 -34888883 + L2 LINE L2 3179 3311 -2 245 281 211 44 chrX 127711062 127711176 -34888754 - L2 LINE L2 -1 3312 3180 241 226 16 0 chrX 127711196 127711258 -34888672 - L1MC4 LINE L1 -1339 6703 6641 388 356 40 23 chrX 127711263 127711440 -34888490 - L2 LINE L2 -180 3133 2954 240 299 124 0 chrX 127711552 127711649 -34888281 - L2 LINE L2 -5 3308 3200 300 294 91 28 chrX 127711754 127712011 -34887919 + L1P4 LINE L1 5538 5809 -352 615 326 75 12 chrX 127712025 127712408 -34887522 - MLT1J LTR MaLR -58 453 1 555 245 34 0 chrX 127712422 127712569 -34887361 - MER33 DNA MER1_type -171 153 2 25 51 0 0 chrX 127712776 127712815 -34887115 + AT_rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chrX 127715054 127715089 -34884841 + AT_rich Low_complexity Low_complexity 1 35 0 1386 143 0 0 chrX 127715129 127715353 -34884577 - L1PA13 LINE L1 -3 6160 5937 14673 205 10 11 chrX 127715354 127717527 -34882403 - L1P LINE L1 -813 5333 3158 516 16 0 0 chrX 127717527 127717588 -34882342 + (TG)n Simple_repeat Simple_repeat 2 62 0 14673 205 10 11 chrX 127717588 127718541 -34881389 - L1P LINE L1 -2988 3158 2210 192 40 0 0 chrX 127718541 127718566 -34881364 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 14673 205 10 11 chrX 127718566 127718889 -34881041 - L1P LINE L1 -3936 2210 1888 267 322 165 25 chrX 127719412 127719533 -34880397 - L2 LINE L2 -2 3270 3133 2021 174 24 29 chrX 127719736 127720296 -34879634 - MLT2A2 LTR ERVL 0 554 1 406 239 0 0 chrX 127720891 127720983 -34878947 - L1P LINE L1 -3549 2597 2506 411 370 18 39 chrX 127721035 127721318 -34878612 + L1PA16 LINE L1 788 1062 -6512 1666 127 112 19 chrX 127721318 127721632 -34878298 - MER61A LTR ERV1 0 343 1 411 370 18 39 chrX 127721632 127721729 -34878201 + L1PA16 LINE L1 1062 1160 -6414 326 224 9 75 chrX 127722102 127722209 -34877721 + L1PA16 LINE L1 2083 2182 -5399 11074 239 21 23 chrX 127722505 127725689 -34874241 + L1PA16 LINE L1 2243 5432 -2172 1984 141 44 44 chrX 127725689 127726051 -34873879 + THE1B LTR MaLR 3 364 0 11298 114 2 4 chrX 127726051 127726548 -34873382 + THE1B-int LTR MaLR 1 497 -1083 2145 122 0 10 chrX 127726548 127726852 -34873078 + AluSc SINE Alu 1 301 -8 11298 114 2 4 chrX 127726852 127727936 -34871994 + THE1B-int LTR MaLR 497 1580 0 2163 137 27 33 chrX 127727936 127728302 -34871628 + THE1B LTR MaLR 1 364 0 11074 239 21 23 chrX 127728302 127730470 -34869460 + L1PA16 LINE L1 5429 7595 -9 361 295 0 0 chrX 127730935 127731047 -34868883 - MER117 DNA MER1_type -54 143 32 986 214 30 92 chrX 127731882 127732045 -34867885 - MLT1B LTR MaLR 0 396 225 2201 98 27 0 chrX 127732045 127732340 -34867590 + AluSg SINE Alu 1 303 -7 986 214 30 92 chrX 127732340 127732588 -34867342 - MLT1B LTR MaLR -171 225 4 345 24 0 0 chrX 127732682 127732724 -34867206 + (CA)n Simple_repeat Simple_repeat 2 43 0 384 60 254 0 chrX 127733105 127733172 -34866758 + MLT2A1 LTR ERVL 1 84 -360 35678 99 15 10 chrX 127733172 127735899 -34864031 + HERVL-A2 LTR ERVL 391 3161 -2493 2990 92 18 18 chrX 127735899 127736343 -34863587 - MLT2A1 LTR ERVL 0 444 1 35678 99 15 10 chrX 127736343 127738851 -34861079 + HERVL-A2 LTR ERVL 3161 5654 0 2265 83 71 71 chrX 127738851 127739262 -34860668 + MLT2A2 LTR ERVL 1 411 -42 209 125 25 0 chrX 127739264 127739304 -34860626 + (TA)n Simple_repeat Simple_repeat 1 41 0 352 89 0 18 chrX 127739304 127739360 -34860570 + MLT2A2 LTR ERVL 390 444 0 183 156 0 0 chrX 127739373 127739405 -34860525 + (TTG)n Simple_repeat Simple_repeat 2 33 0 763 32 0 0 chrX 127741740 127741833 -34858097 + L1PA3 LINE L1 6060 6152 -3 423 0 0 0 chrX 127742177 127742224 -34857706 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chrX 127742414 127742443 -34857487 + AT_rich Low_complexity Low_complexity 1 29 0 1690 152 49 0 chrX 127742443 127742771 -34857159 - L1MA8 LINE L1 -6 6285 5942 2798 140 22 45 chrX 127743463 127744014 -34855916 - Tigger1 DNA MER2_type 0 2418 1881 4247 157 14 15 chrX 127744020 127744805 -34855125 - L1PA15 LINE L1 0 6165 5382 504 289 44 6 chrX 127744977 127745136 -34854794 + L2 LINE L2 3149 3313 0 459 288 29 12 chrX 127746944 127747114 -34852816 + L2 LINE L2 3141 3313 0 24 67 0 0 chrX 127748144 127748189 -34851741 + AT_rich Low_complexity Low_complexity 1 45 0 252 0 0 0 chrX 127748483 127748511 -34851419 + (GA)n Simple_repeat Simple_repeat 1 28 0 4894 196 15 8 chrX 127749502 127750165 -34849765 - L1PA16 LINE L1 0 6166 5509 2346 102 0 3 chrX 127750165 127750470 -34849460 - AluSg SINE Alu -6 304 1 4894 196 15 8 chrX 127750470 127751861 -34848069 - L1PA16 LINE L1 -657 5509 4097 4774 205 28 4 chrX 127751856 127752818 -34847112 - MST-int LTR MaLR -131 1520 536 * 1703 202 37 29 chrX 127752818 127753364 -34846566 - MLT2A2 LTR ERVL 0 554 6 2096 199 0 5 chrX 127753372 127753799 -34846131 - MST-int LTR MaLR -1110 541 117 1237 119 46 14 chrX 127753801 127754020 -34845910 - MSTA LTR MaLR -202 226 1 5637 209 23 7 chrX 127754022 127754762 -34845168 + L1 LINE L1 3129 3904 -2242 2225 118 0 0 chrX 127754762 127755059 -34844871 + AluSq SINE Alu 1 297 -16 5637 209 23 7 chrX 127755059 127755729 -34844201 + L1 LINE L1 3904 4562 -1584 328 233 12 12 chrX 127755857 127755943 -34843987 + LTR25 LTR ERV1 248 333 -461 934 157 19 11 chrX 127756135 127756352 -34843578 + LTR25 LTR ERV1 341 794 0 398 183 0 65 chrX 127756363 127756456 -34843474 + LTR25-int LTR ERV1 5 91 -6905 2334 224 10 63 chrX 127756468 127757151 -34842779 + LTR25-int LTR ERV1 267 913 -6083 9228 40 0 0 chrX 127757167 127759061 -34840869 - L1PA5 LINE L1 -3 6151 4259 7841 44 1 4 chrX 127759061 127760083 -34839847 + L1PA5 LINE L1 3236 4254 -1892 8637 201 25 24 chrX 127760083 127763050 -34836880 + LTR27-int LTR ERV1 755 4120 -2876 860 79 9 0 chrX 127763056 127763170 -34836760 + AluY SINE Alu 1 115 -196 2394 68 3 0 chrX 127763201 127763496 -34836434 + AluY SINE Alu 1 296 -15 10029 168 39 30 chrX 127763511 127766487 -34833443 + LTR27-int LTR ERV1 2214 6994 -2 472 246 16 16 chrX 127766611 127766733 -34833197 + LTR25 LTR ERV1 232 353 -441 954 210 56 5 chrX 127766908 127767122 -34832808 + MER61E LTR ERV1 341 565 -4 3527 166 5 25 chrX 127767128 127767723 -34832207 + L1P5 LINE L1 4558 5164 -987 880 65 81 0 chrX 127767723 127767847 -34832083 + MER85 DNA T2_type 2 135 -4 3527 166 5 25 chrX 127767847 127768304 -34831626 + L1P5 LINE L1 5164 5583 -568 8263 52 1 0 chrX 127768304 127769269 -34830661 - LTR5 LTR ERVK -3 966 1 3527 166 5 25 chrX 127769269 127769464 -34830466 + L1P5 LINE L1 5583 5780 -371 1926 155 45 5 chrX 127769474 127769854 -34830076 + L1MA7 LINE L1 5895 6289 -2 22 0 0 0 chrX 127769860 127769882 -34830048 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chrX 127770556 127770590 -34829340 + AT_rich Low_complexity Low_complexity 1 34 0 25 65 0 0 chrX 127770768 127770814 -34829116 + AT_rich Low_complexity Low_complexity 1 46 0 32 67 0 0 chrX 127771194 127771254 -34828676 + AT_rich Low_complexity Low_complexity 1 60 0 1090 273 34 28 chrX 127773024 127773350 -34826580 - MLT1E3 LTR MaLR 0 624 297 2503 183 18 5 chrX 127773369 127773877 -34826053 + LTR27 LTR ERV1 2 486 -15 1101 236 51 51 chrX 127773879 127774231 -34825699 - MLT1E1 LTR MaLR -302 352 1 2146 122 0 7 chrX 127774889 127775230 -34824700 + AluSx SINE Alu 1 312 0 275 335 44 70 chrX 127775232 127775390 -34824540 + L2 LINE L2 3119 3272 0 182 270 48 63 chrX 127775638 127775701 -34824229 - L2 LINE L2 -95 3177 3116 27 81 0 0 chrX 127776079 127776141 -34823789 + AT_rich Low_complexity Low_complexity 1 62 0 1576 308 28 11 chrX 127777102 127777674 -34822256 - HERV16 LTR ERVL -2796 2200 1619 * 2263 320 35 23 chrX 127777665 127778561 -34821369 - HERV16 LTR ERVL -3830 1166 261 1189 272 58 29 chrX 127778792 127779208 -34820722 - LTR16A LTR ERVL 0 450 23 548 312 60 46 chrX 127781340 127781923 -34818007 + HAL1 LINE L1 1782 2372 -135 11682 200 11 3 chrX 127782039 127784136 -34815794 + L1MA3 LINE L1 9 2122 -5443 1033 192 27 27 chrX 127834139 127834436 -34765494 + L1MA3 LINE L1 4555 4851 -2714 2443 115 19 5 chrX 127834436 127834809 -34765121 + MLT2A1 LTR ERVL 1 378 -66 231 114 0 0 chrX 127834809 127834853 -34765077 + (TA)n Simple_repeat Simple_repeat 1 44 0 1750 80 0 0 chrX 127834854 127835091 -34764839 + HERVL LTR ERVL 1889 2125 -3529 531 56 0 0 chrX 127835092 127835163 -34764767 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 379 74 0 0 chrX 127835166 127835220 -34764710 + MLT2A1 LTR ERVL 400 453 0 2985 189 26 37 chrX 127835220 127835714 -34764216 + L1MA3 LINE L1 4847 5332 -2233 1778 154 10 14 chrX 127835714 127836006 -34763924 + AluSx SINE Alu 1 291 -21 2985 189 26 37 chrX 127836006 127836267 -34763663 + L1MA3 LINE L1 5332 5594 -1971 2716 111 52 7 chrX 127836271 127836695 -34763235 + MLT2A1 LTR ERVL 2 444 0 3507 80 6 0 chrX 127836695 127837180 -34762750 + HERVL-A1 LTR ERVL 1 488 -5166 26191 91 5 12 chrX 127837182 127840925 -34759005 + HERVL-A1 LTR ERVL 876 4590 -1064 5347 175 46 7 chrX 127840925 127842990 -34756940 + L1MA3 LINE L1 5602 7724 0 313 275 8 42 chrX 127842995 127843115 -34756815 - MER3 DNA MER1_type -86 123 8 938 199 16 5 chrX 127844567 127844758 -34755172 + L1M4 LINE L1 5431 5623 -551 2186 118 48 28 chrX 127844761 127845118 -34754812 - THE1B LTR MaLR 0 364 1 4762 92 3 18 chrX 127845118 127845805 -34754125 - THE1B-int LTR MaLR 0 1580 904 268 123 18 18 chrX 127845800 127845857 -34754073 + THE1B-int LTR MaLR 1524 1580 0 * 2460 106 17 3 chrX 127845857 127846216 -34753714 + THE1B LTR MaLR 1 364 0 1016 154 7 14 chrX 127846216 127846480 -34753450 + L1M1 LINE L1 3477 3739 -3826 * 1152 221 14 0 chrX 127846478 127846754 -34753176 - L1 LINE L1 -3570 2576 2297 * 2273 253 56 16 chrX 127846746 127847599 -34752331 - L1ME1 LINE L1 -77 6325 5442 999 275 65 12 chrX 127847604 127848810 -34751120 - L1ME1 LINE L1 -1873 4509 3105 263 247 12 0 chrX 127848896 127848977 -34750953 - L1ME1 LINE L1 -3215 3167 3086 1824 5 0 0 chrX 127848977 127849181 -34750749 + L1PA3 LINE L1 5950 6153 -2 38 0 0 0 chrX 127849182 127849220 -34750710 + AT_rich Low_complexity Low_complexity 1 38 0 1440 250 42 19 chrX 127849262 127849878 -34750052 - L1ME1 LINE L1 -3316 3066 2437 2410 213 9 9 chrX 127849946 127850519 -34749411 - L1MB8 LINE L1 -21 6157 5585 1021 277 108 17 chrX 127850516 127851223 -34748707 - L1ME1 LINE L1 -3995 2387 1617 * 1963 184 13 8 chrX 127851228 127851380 -34748550 - MLT1B LTR MaLR -3 387 237 1990 182 69 17 chrX 127851380 127851787 -34748143 + MSTA LTR MaLR 1 428 0 1963 184 13 8 chrX 127851787 127852010 -34747920 - MLT1B LTR MaLR -153 237 10 272 294 42 8 chrX 127852010 127852129 -34747801 - L1ME1 LINE L1 -4891 1493 1371 4748 203 39 8 chrX 127853382 127854334 -34745596 - L1PA13 LINE L1 -5806 981 1 5499 150 20 27 chrX 127854517 127856011 -34743919 - L1PB2 LINE L1 -2 6149 4677 895 307 57 15 chrX 127856279 127856611 -34743319 + LTR16A LTR ERVL 95 440 -10 8484 151 56 88 chrX 127856636 127858450 -34741480 - MER52A LTR ERV1 0 1755 1 24 67 0 0 chrX 127859021 127859066 -34740864 + AT_rich Low_complexity Low_complexity 1 45 0 240 35 0 0 chrX 127860825 127860854 -34739076 + (TG)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chrX 127860853 127860875 -34739055 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 21 36 0 0 chrX 127861251 127861279 -34738651 + AT_rich Low_complexity Low_complexity 1 28 0 1744 273 12 83 chrX 127861558 127862365 -34737565 + L1PA15 LINE L1 1 750 -6037 * 9132 223 22 15 chrX 127862350 127867503 -34732427 + L1PA15 LINE L1 1291 6488 -329 243 196 36 0 chrX 127867495 127867551 -34732379 + L1PA13 LINE L1 5360 5417 -751 * 305 87 43 0 chrX 127867567 127867613 -34732317 - L1PA13 LINE L1 -21 6142 6095 * 732 168 19 6 chrX 127867608 127867769 -34732161 - L1 LINE L1 -808 5338 5176 4645 129 8 7 chrX 127867778 127868522 -34731408 + L1PA13 LINE L1 5419 6163 0 1797 186 0 22 chrX 127868522 127868611 -34731319 + L1PA15 LINE L1 6465 6554 -262 2517 116 8 3 chrX 127868611 127868973 -34730957 + THE1B LTR MaLR 1 364 0 1797 186 0 22 chrX 127868973 127869233 -34730697 + L1PA15 LINE L1 6554 6816 0 1470 149 0 0 chrX 127870366 127870581 -34729349 - AluSx SINE Alu -97 215 1 2281 78 0 14 chrX 127871801 127872094 -34727836 - AluSc SINE Alu -18 291 3 723 200 35 12 chrX 127873606 127873776 -34726154 - MER92B LTR ERV1 -10 626 453 228 128 0 0 chrX 127873852 127873885 -34726045 + MLT2B1 LTR ERVL 1 33 -487 2154 158 18 20 chrX 127873885 127874323 -34725607 - LTR23 LTR ERV1 0 437 1 9681 1 0 6 chrX 127874323 127875743 -34724187 - LTR23-int LTR ERV1 0 5123 3574 1872 126 11 3 chrX 127875743 127876029 -34723901 + L1PA11 LINE L1 5886 6173 -1 9681 1 0 6 chrX 127876029 127876283 -34723647 - LTR23-int LTR ERV1 -1549 3574 3320 657 157 18 4 chrX 127876283 127876405 -34723525 - THE1B LTR MaLR 0 392 263 4270 110 105 108 chrX 127876405 127877770 -34722160 + pTR5 LTR ERV1 764 2438 0 1820 125 8 0 chrX 127877773 127878037 -34721893 - THE1B LTR MaLR -98 266 1 10259 0 0 7 chrX 127878037 127878428 -34721502 - LTR23-int LTR ERV1 -1804 3319 2927 5113 78 1 1 chrX 127878428 127879095 -34720835 - PABL_B LTR ERV1 0 667 1 10259 0 0 7 chrX 127879095 127879925 -34720005 - LTR23-int LTR ERV1 -2196 2927 2106 621 153 0 0 chrX 127879925 127880023 -34719907 + MER4A LTR ERV1 1 98 -566 1708 127 41 22 chrX 127880023 127880362 -34719568 + MER4A LTR ERV1 261 664 0 5778 0 0 0 chrX 127880362 127881051 -34718879 - LTR23-int LTR ERV1 -3018 2105 1417 1989 123 13 67 chrX 127881051 127881424 -34718506 + MER4A LTR ERV1 1 353 -311 589 95 259 17 chrX 127881495 127881611 -34718319 + MER4C LTR ERV1 302 445 -20 1752 0 0 0 chrX 127881611 127881803 -34718127 - LTR23-int LTR ERV1 -3707 1416 1225 276 305 76 15 chrX 127881803 127881934 -34717996 - MER34C LTR ERV1 -155 430 292 323 0 0 0 chrX 127881934 127881971 -34717959 - LTR23-int LTR ERV1 -4030 1093 1057 383 156 0 0 chrX 127881971 127882035 -34717895 - MER34C LTR ERV1 -362 223 160 2222 0 0 0 chrX 127882035 127882277 -34717653 - LTR23-int LTR ERV1 -4131 992 751 2765 120 152 82 chrX 127882281 127882865 -34717065 + MER4A LTR ERV1 1 625 -39 4542 99 12 9 chrX 127882879 127883554 -34716376 - L1PB1 LINE L1 -3 7567 6891 3634 210 13 29 chrX 127883559 127884468 -34715462 - L1PB1 LINE L1 -1116 6449 5555 * 8408 201 16 9 chrX 127884464 127886063 -34713867 - L1PB1 LINE L1 -5942 1623 14 4163 5 2 0 chrX 127886063 127886667 -34713263 - LTR23-int LTR ERV1 -4379 744 1 2313 116 31 16 chrX 127886667 127887093 -34712837 - LTR23 LTR ERV1 0 467 3 1151 219 67 86 chrX 127887097 127887530 -34712400 + MLT2C2 LTR ERVL 30 454 -10 1305 250 28 25 chrX 127887536 127887900 -34712030 - MER92B LTR ERV1 -269 367 3 26 64 0 0 chrX 127887980 127888027 -34711903 + AT_rich Low_complexity Low_complexity 1 47 0 1047 188 79 79 chrX 127888553 127888883 -34711047 + L1MB7 LINE L1 5840 6169 -15 601 207 84 133 chrX 127888927 127889236 -34710694 + L1M2 LINE L1 1166 1459 -5571 2699 173 27 13 chrX 127889236 127890053 -34709877 + L1M2 LINE L1 5748 6579 -672 1946 149 55 19 chrX 127890053 127890415 -34709515 + THE1C LTR MaLR 1 375 0 8560 150 47 12 chrX 127890415 127890546 -34709384 + THE1C-int LTR MaLR 1 126 -1454 5103 153 51 34 chrX 127890546 127891599 -34708331 - MER11C LTR ERVK 0 1071 1 8560 150 47 12 chrX 127891599 127892884 -34707046 + THE1C-int LTR MaLR 126 1466 -114 419 320 68 50 chrX 127892915 127893137 -34706793 - MIR SINE MIR -35 227 2 524 269 80 36 chrX 127893797 127894046 -34705884 + MIR SINE MIR 3 262 0 231 370 119 14 chrX 127894321 127894540 -34705390 - L2 LINE L2 -874 2440 2199 182 313 21 0 chrX 127895497 127895545 -34704385 + MIR3 SINE MIR 138 186 -22 312 358 127 14 chrX 127896407 127896628 -34703302 + MIR SINE MIR 17 262 0 627 330 77 69 chrX 127896633 127896900 -34703030 - L2 LINE L2 -2 3311 3048 1509 238 31 3 chrX 127896900 127897253 -34702677 - MLT1A1 LTR MaLR 0 365 3 627 330 77 69 chrX 127897253 127897579 -34702351 - L2 LINE L2 -265 3048 2692 389 305 16 23 chrX 127897678 127897806 -34702124 + MIR SINE MIR 63 189 -73 15204 227 26 15 chrX 127897832 127904344 -34695586 - L1PA15 LINE L1 -7 6809 5 509 255 28 21 chrX 127904349 127904490 -34695440 - L2 LINE L2 -4 3309 3168 425 20 0 0 chrX 127904493 127904544 -34695386 - MADE1 DNA Mariner 0 80 30 606 328 30 38 chrX 127954601 127954957 -34644973 - L2 LINE L2 -249 3064 2665 2315 101 0 0 chrX 127955098 127955395 -34644535 + AluSp SINE Alu 1 297 -16 230 245 20 0 chrX 127955743 127955792 -34644138 + CT-rich Low_complexity Low_complexity 4 53 0 318 308 35 17 chrX 127955939 127956096 -34643834 - MIR SINE MIR -14 248 86 198 118 0 0 chrX 127956096 127956130 -34643800 + (TA)n Simple_repeat Simple_repeat 1 34 0 318 308 35 17 chrX 127956130 127956144 -34643786 - MIR SINE MIR -176 86 74 1992 190 21 0 chrX 127956370 127956702 -34643228 + MER1B DNA MER1_type 1 339 0 286 222 14 0 chrX 127956753 127956825 -34643105 + MER103 DNA DNA 2 74 -92 1760 228 4 58 chrX 127957746 127958018 -34641912 - L1 LINE L1 -909 5237 5009 13937 33 8 1 chrX 127958018 127960502 -34639428 - L1PA5 LINE L1 -2 6152 3658 1760 228 4 58 chrX 127960502 127960782 -34639148 - L1 LINE L1 -1137 5009 4715 4355 211 8 7 chrX 127960788 127961692 -34638238 + L1PA16 LINE L1 5254 6158 -8 298 260 52 0 chrX 127962358 127962435 -34637495 + L1MB1 LINE L1 820 900 -5241 1409 244 67 7 chrX 127962660 127963065 -34636865 + L1MB1 LINE L1 835 1263 -4878 753 147 23 0 chrX 127963065 127963194 -34636736 + FLAM_C SINE Alu 1 132 -1 1258 149 0 54 chrX 127963217 127963459 -34636471 + AluJb SINE Alu 84 312 0 308 214 48 28 chrX 127963479 127963624 -34636306 + L1MB1 LINE L1 3084 3231 -2979 8709 201 23 41 chrX 127963629 127965722 -34634208 + L1MB1 LINE L1 3279 5298 -955 1903 179 15 20 chrX 127965722 127966130 -34633800 + L1MA6 LINE L1 5883 6288 -12 8709 201 23 41 chrX 127966130 127966988 -34632942 + L1MB1 LINE L1 5298 6170 -83 604 320 4 27 chrX 127966991 127967216 -34632714 + L1PB4 LINE L1 10 229 -6620 529 160 20 10 chrX 127967226 127967326 -34632604 + MSTA LTR MaLR 1 101 -327 2758 226 21 48 chrX 127967326 127968385 -34631545 + L1PB4 LINE L1 4507 5455 -1393 590 137 0 0 chrX 127968389 127968491 -34631439 + L1M3 LINE L1 5598 5699 -635 3239 193 41 15 chrX 127968492 127969464 -34630466 + L1PB4 LINE L1 5454 6399 -459 1726 189 139 13 chrX 127969464 127969844 -34630086 + MSTA LTR MaLR 1 428 0 8921 144 13 38 chrX 127969846 127971465 -34628465 + MSTA-int LTR MaLR 3 1580 0 2046 140 140 11 chrX 127971465 127971844 -34628086 + MSTA LTR MaLR 1 428 0 3239 193 41 15 chrX 127971844 127972059 -34627871 + L1PB4 LINE L1 6398 6666 -192 * 5158 147 25 13 chrX 127972047 127973112 -34626818 + L1PA15 LINE L1 5067 6144 -21 356 331 33 46 chrX 127973214 127973365 -34626565 + MIR SINE MIR 7 155 -107 216 122 20 61 chrX 127973410 127973459 -34626471 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 538 271 79 17 chrX 127973461 127973638 -34626292 - MIR SINE MIR -58 204 17 448 318 83 40 chrX 127973739 127974041 -34625889 - MLT1K LTR MaLR 0 588 274 21 0 0 0 chrX 127974259 127974280 -34625650 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chrX 127974423 127974451 -34625479 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 336 24 0 0 chrX 127974450 127974491 -34625439 + (GA)n Simple_repeat Simple_repeat 2 42 0 485 246 0 70 chrX 127974492 127974606 -34625324 - FLAM_A SINE Alu -36 106 1 300 241 0 0 chrX 127974609 127974688 -34625242 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 2416 71 3 0 chrX 127974989 127975297 -34624633 - AluY SINE Alu -2 309 1 1970 186 30 29 chrX 127975739 127976296 -34623634 + MLT2A2 LTR ERVL 1 554 0 35001 119 10 3 chrX 127976296 127981343 -34618587 + HERVL-A2 LTR ERVL 1 5080 -574 1991 138 17 0 chrX 127981347 127981645 -34618285 - THE1B LTR MaLR -61 303 1 23 0 0 0 chrX 127981813 127981836 -34618094 + AT_rich Low_complexity Low_complexity 1 23 0 662 295 28 31 chrX 127982480 127982734 -34617196 + MIR SINE MIR 10 262 0 13360 222 34 34 chrX 127982984 127988398 -34611532 - L1PB3 LINE L1 -2 6868 2411 309 51 0 0 chrX 127988398 127988437 -34611493 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 13360 222 34 34 chrX 127988437 127990732 -34609198 - L1PB3 LINE L1 -4459 2411 115 21 0 0 0 chrX 127991268 127991289 -34608641 + AT_rich Low_complexity Low_complexity 1 21 0 2394 68 0 3 chrX 127992456 127992751 -34607179 - AluY SINE Alu -17 294 1 227 253 13 0 chrX 127993182 127993261 -34606669 + (TA)n Simple_repeat Simple_repeat 1 80 0 1150 228 56 43 chrX 127993302 127993955 -34605975 + L1MC/D LINE L1 5029 5696 -663 198 321 170 25 chrX 127994077 127994236 -34605694 - MIR SINE MIR -1 261 80 1039 183 14 0 chrX 127994728 127994941 -34604989 + L1 LINE L1 3275 3490 -2656 13448 216 18 25 chrX 127994949 128000213 -34599717 + L1PA13 LINE L1 1 5238 -1559 267 152 0 0 chrX 128000243 128000289 -34599641 + L1PA16 LINE L1 6096 6141 -25 2189 99 0 10 chrX 128000294 128000597 -34599333 - AluSx SINE Alu -12 300 1 2631 223 42 49 chrX 128000623 128002130 -34597800 + L1M4c LINE L1 1984 3473 -2909 584 201 28 14 chrX 128002127 128002271 -34597659 - L1MA3 LINE L1 -326 5978 5833 * 947 151 0 16 chrX 128002276 128002461 -34597469 + L1MA3 LINE L1 5971 6152 -153 42914 33 23 0 chrX 128002480 128008493 -34591437 + L1PA3 LINE L1 1 6155 0 35 24 0 0 chrX 128008493 128008535 -34591395 + AT_rich Low_complexity Low_complexity 1 42 0 1032 98 0 0 chrX 128009218 128009771 -34590159 + (TA)n Simple_repeat Simple_repeat 1 553 0 222 307 127 33 chrX 128009773 128009923 -34590007 - MER5A DNA MER1_type -25 164 1 545 328 112 26 chrX 128010170 128010572 -34589358 + LTR16A LTR ERVL 9 450 0 235 299 43 0 chrX 128010956 128011073 -34588857 - L1MC5 LINE L1 -33 7928 7807 216 232 0 18 chrX 128011085 128011141 -34588789 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 647 285 66 0 chrX 128111219 128111461 -34488469 - Charlie4 DNA MER1_type -1669 292 35 464 271 24 12 chrX 128111494 128111664 -34488266 + L1MB7 LINE L1 6004 6175 -9 1257 159 97 52 chrX 128111705 128111758 -34488172 - MER33 DNA MER1_type -2261 324 275 980 85 0 0 chrX 128111758 128111887 -34488043 + L1PA8 LINE L1 6031 6159 -13 1257 159 97 52 chrX 128111887 128112142 -34487788 - MER33 DNA MER1_type -2310 275 2 292 268 84 7 chrX 128112816 128112958 -34486972 + L1M4 LINE L1 2295 2447 -3699 1206 168 0 0 chrX 128112965 128113185 -34486745 + L1MA6 LINE L1 6081 6300 0 446 350 117 3 chrX 128113263 128113554 -34486376 + L1M4 LINE L1 2607 2930 -3216 1364 165 2 110 chrX 128113558 128113978 -34485952 - L1M2 LINE L1 -743 5403 5176 6236 207 36 7 chrX 128114421 128115827 -34484103 - L1M2 LINE L1 -967 5179 3734 3202 204 14 12 chrX 128115810 128116359 -34483571 + L1MA10 LINE L1 5612 6164 -170 186 43 0 0 chrX 128116359 128116382 -34483548 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 3202 204 14 12 chrX 128116382 128116552 -34483378 + L1MA10 LINE L1 6164 6332 -2 213 39 0 0 chrX 128116889 128116915 -34483015 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 242 274 0 0 chrX 128117970 128118032 -34481898 - L1P1 LINE L1 -399 5756 5695 * 529 271 131 16 chrX 128118029 128118335 -34481595 - L1ME LINE L1 -460 5661 5321 249 300 160 0 chrX 128119711 128119811 -34480119 - MIR SINE MIR 0 262 147 1698 190 104 8 chrX 128119812 128120206 -34479724 - MSTB1 LTR MaLR 0 432 1 1321 259 37 37 chrX 128120216 128120645 -34479285 - MLT1C LTR MaLR -32 435 7 371 286 56 8 chrX 128120651 128120777 -34479153 - MLT1C-int LTR MaLR 0 1371 1240 1029 232 59 56 chrX 128120819 128121159 -34478771 - MLT1C-int LTR MaLR -98 1273 933 3610 187 14 99 chrX 128121355 128122321 -34477609 - MLT1C-int LTR MaLR -487 884 1 1317 229 75 45 chrX 128122321 128122723 -34477207 - MLT1C LTR MaLR 0 467 54 4566 246 43 35 chrX 128122724 128124014 -34475916 + MSTD-int LTR MaLR 14 1277 -303 5380 147 14 15 chrX 128124021 128125065 -34474865 + L1PA15 LINE L1 5117 6159 -6 1615 184 60 20 chrX 128125066 128125413 -34474517 + MSTD-int LTR MaLR 1375 1735 0 1125 252 72 29 chrX 128125413 128125790 -34474140 + MSTD LTR MaLR 1 393 -3 8036 202 30 5 chrX 128125846 128128780 -34471150 - L1MA3 LINE L1 0 7724 4712 5059 155 18 12 chrX 128128784 128129718 -34470212 - L1PA15 LINE L1 -6 7597 6678 2025 154 125 8 chrX 128129719 128130102 -34469828 + MSTA LTR MaLR 1 428 0 8388 174 14 41 chrX 128130106 128131726 -34468204 + MSTA-int LTR MaLR 5 1580 0 2174 148 122 8 chrX 128131726 128132110 -34467820 + MSTA LTR MaLR 1 428 0 15206 228 17 8 chrX 128132110 128135824 -34464106 - L1PA15 LINE L1 -903 6681 2935 336 320 84 21 chrX 128135832 128136266 -34463664 - L1PA15 LINE L1 -5501 2080 1545 1847 154 39 21 chrX 128136310 128136647 -34463283 + MER61A LTR ERV1 1 343 0 4556 129 14 3 chrX 128136647 128137109 -34462821 + MER61A-int LTR ERV1 2 507 -4710 216 0 0 0 chrX 128137109 128137133 -34462797 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4556 129 14 3 chrX 128137133 128137404 -34462526 + MER61A-int LTR ERV1 507 774 -4443 * 26781 83 32 20 chrX 128137400 128137986 -34461944 + MER61A-int LTR ERV1 1320 1898 -3319 2269 114 0 3 chrX 128137986 128138294 -34461636 - AluSx SINE Alu -5 307 1 26781 83 32 20 chrX 128138294 128141560 -34458370 + MER61A-int LTR ERV1 1898 5217 0 2056 153 11 37 chrX 128141560 128141912 -34458018 + MER61A LTR ERV1 1 343 0 2642 273 33 43 chrX 128141918 128142764 -34457166 - L1PA15 LINE L1 -6743 838 1 * 6677 175 43 18 chrX 128142756 128143930 -34456000 - L1MA3 LINE L1 -2844 4721 3578 723 81 0 0 chrX 128143930 128144029 -34455901 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 6677 175 43 18 chrX 128144029 128145219 -34454711 - L1MA3 LINE L1 -3987 3578 2295 434 229 0 30 chrX 128145220 128145351 -34454579 - L1MDa LINE L1 -5130 1410 1284 1027 241 61 52 chrX 128145409 128146008 -34453922 - L1MEc LINE L1 -3597 2618 2036 2517 75 0 0 chrX 128146111 128146418 -34453512 - AluY SINE Alu -4 307 1 403 321 162 42 chrX 128147013 128147539 -34452391 + L1MC4a LINE L1 6072 6660 -1148 3328 172 26 2 chrX 128147539 128148186 -34451744 + L1MA7 LINE L1 5231 5892 -399 507 203 0 0 chrX 128148192 128148310 -34451620 + L1MA7 LINE L1 6164 6281 -10 708 244 28 6 chrX 128148335 128148515 -34451415 + L1MC4 LINE L1 6732 6915 -1127 2424 45 0 10 chrX 128148705 128149014 -34450916 - L1PA4 LINE L1 -1 6154 5849 2236 202 62 9 chrX 128149607 128150046 -34449884 - L1MB7 LINE L1 -8 6176 5701 2323 70 3 3 chrX 128150046 128150331 -34449599 - AluSc SINE Alu -17 292 8 2236 202 62 9 chrX 128150331 128150440 -34449490 - L1MB7 LINE L1 -483 5701 5599 2683 129 21 3 chrX 128150453 128150925 -34449005 - L1P4 LINE L1 -467 5699 5221 324 208 85 39 chrX 128151934 128152064 -34447866 - HAL1 LINE L1 -107 2400 2265 264 217 38 76 chrX 128152226 128152383 -34447547 - HAL1b LINE L1 -471 877 727 3398 224 18 2 chrX 128152507 128153736 -34446194 - L1PA16 LINE L1 0 6166 4781 279 0 0 0 chrX 128153736 128153767 -34446163 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3398 224 18 2 chrX 128153767 128153790 -34446140 - L1PA16 LINE L1 -1385 4781 4760 2311 239 23 22 chrX 128153794 128153911 -34446019 - L1 LINE L1 -1578 4568 4453 7625 92 6 14 chrX 128153911 128154991 -34444939 + MER11C LTR ERVK 1 1071 0 2311 239 23 22 chrX 128154991 128155558 -34444372 - L1 LINE L1 -1693 4453 3883 1072 100 0 0 chrX 128155569 128155719 -34444211 - L1MA2 LINE L1 -3 6301 6152 1107 116 0 0 chrX 128155724 128155894 -34444036 - AluSc SINE Alu 0 302 133 248 98 0 0 chrX 128155905 128155946 -34443984 - L1MA2 LINE L1 -164 6140 6100 * 3825 155 10 8 chrX 128155940 128157053 -34442877 + L1M1 LINE L1 4570 5687 -617 446 186 24 48 chrX 128157050 128157174 -34442756 - L1PA16 LINE L1 -2589 3557 3437 * 1009 143 6 0 chrX 128157185 128157353 -34442577 + HERVL-A2 LTR ERVL 5486 5654 0 2084 185 26 32 chrX 128157353 128157915 -34442015 + MLT2A2 LTR ERVL 1 554 0 6117 121 35 11 chrX 128157915 128159958 -34439972 - L1PBa LINE L1 -4626 2237 3 2896 194 104 23 chrX 128159967 128160249 -34439681 - L1MC4 LINE L1 -210 6134 6770 189 0 0 0 chrX 128160249 128160270 -34439660 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2896 194 104 23 chrX 128160270 128161073 -34438857 - L1MC4 LINE L1 427 6771 6034 2329 140 0 3 chrX 128161657 128162028 -34437902 - L1PB1 LINE L1 0 6867 6498 551 43 106 5 chrX 128162036 128162251 -34437679 + (TA)n Simple_repeat Simple_repeat 1 236 0 14305 193 40 13 chrX 128162262 128168419 -34431511 - L1PB1 LINE L1 -360 6507 6 615 158 0 0 chrX 128168561 128168656 -34431274 + AluJ/FLAM SINE Alu 1 95 -217 19203 176 29 9 chrX 128170236 128173361 -34426569 + L1MA1 LINE L1 12 3076 -4645 1948 126 0 7 chrX 128173361 128173674 -34426256 + AluSx SINE Alu 1 311 0 19203 176 29 9 chrX 128173674 128178106 -34421824 + L1MA1 LINE L1 3076 7714 -7 2813 193 9 3 chrX 128178703 128179278 -34420652 + L1MB2 LINE L1 5587 6164 -7 782 254 33 14 chrX 128180221 128180517 -34419413 - MER90 LTR ERV1 0 614 279 540 320 125 31 chrX 128180761 128181075 -34418855 - L2 LINE L2 -771 2543 2260 1209 242 70 36 chrX 128181075 128181521 -34418409 + MLT2C2 LTR ERVL 4 464 0 540 320 125 31 chrX 128181521 128181784 -34418146 - L2 LINE L2 -1054 2260 1912 338 322 64 41 chrX 128181894 128182065 -34417865 - MIR SINE MIR -51 211 37 917 284 0 0 chrX 128182358 128182576 -34417354 - MIR SINE MIR 0 262 45 21 57 0 0 chrX 128185625 128185660 -34414270 + AT_rich Low_complexity Low_complexity 1 35 0 193 298 60 12 chrX 128185664 128185748 -34414182 + MER5A DNA MER1_type 4 91 -98 1980 296 65 50 chrX 128185799 128186650 -34413280 - L3 LINE CR1 -42 1535 667 180 0 0 0 chrX 128186650 128186670 -34413260 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1980 296 65 50 chrX 128186670 128186779 -34413151 - L3 LINE CR1 -910 667 561 3696 222 44 24 chrX 128186897 128188826 -34411104 - L1MB7 LINE L1 -10 6174 4018 33671 30 1 0 chrX 128188870 128193692 -34406238 + L1PA3 LINE L1 1327 6151 -4 3589 254 14 4 chrX 128193706 128194810 -34405120 - L1MB7 LINE L1 -2695 3451 2337 440 221 23 0 chrX 128194811 128194896 -34405034 - MER44D DNA MER2_type 0 705 619 741 286 0 16 chrX 128194896 128195078 -34404852 + MER8 DNA MER2_type 1 179 -60 281 250 17 0 chrX 128195056 128195116 -34404814 + MER2 DNA MER2_type 285 345 0 * 1382 146 0 0 chrX 128195119 128195339 -34404591 - MER44D DNA MER2_type -90 515 241 9731 84 7 2 chrX 128195416 128196684 -34403246 + HSMAR1 DNA Mariner 14 1287 0 1370 226 8 0 chrX 128196684 128196927 -34403003 - MER44D DNA MER2_type -460 245 1 322 269 0 0 chrX 128196929 128197022 -34402908 - L1MB7 LINE L1 -3811 2335 2243 887 130 25 19 chrX 128197025 128197186 -34402744 - L1MA6 LINE L1 -402 5898 5737 573 294 65 45 chrX 128197187 128197694 -34402236 - L1MEc LINE L1 -4055 2341 1825 574 293 12 6 chrX 128197959 128198123 -34401807 - MLT1A1 LTR MaLR -2 363 199 22461 158 11 14 chrX 128198184 128205920 -34394010 + L1MA3 LINE L1 15 7724 0 192 125 0 0 chrX 128207047 128207079 -34392851 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chrX 128207762 128207790 -34392140 + AT_rich Low_complexity Low_complexity 1 28 0 204 389 56 0 chrX 128208884 128208974 -34390956 + L2 LINE L2 3127 3221 -51 278 227 106 45 chrX 128210153 128210285 -34389645 - HAL1 LINE L1 -8 2499 2360 512 244 143 58 chrX 128210297 128210508 -34389422 - LTR4 LTR ERV1 0 596 358 4734 56 3 2 chrX 128210508 128211098 -34388832 - LTR10C LTR ERV1 0 591 1 512 244 143 58 chrX 128211098 128211144 -34388786 - LTR4 LTR ERV1 -238 358 317 528 252 98 77 chrX 128211236 128211561 -34388369 - LTR4 LTR ERV1 -262 334 3 1463 279 46 20 chrX 128211608 128211983 -34387947 - HAL1 LINE L1 -210 2297 1901 2178 96 7 17 chrX 128211983 128212285 -34387645 - AluSp SINE Alu -3 310 12 1463 279 46 20 chrX 128212285 128212471 -34387459 - HAL1 LINE L1 -606 1901 1721 814 323 42 74 chrX 128212510 128213404 -34386526 - HAL1 LINE L1 -1605 902 37 2663 241 53 72 chrX 128214069 128215326 -34384604 + L1ME1 LINE L1 2944 4176 -1970 577 103 0 0 chrX 128215317 128215395 -34384535 - L1PA13 LINE L1 -298 5865 5788 * 2228 70 19 6 chrX 128215395 128215699 -34384231 + L1PA13 LINE L1 5846 6162 -1 3818 232 59 18 chrX 128215695 128217608 -34382322 + L1ME1 LINE L1 4151 6304 -30 1525 350 50 11 chrX 128217995 128218936 -34380994 - L2 LINE L2 0 3313 2253 235 259 123 25 chrX 128219037 128219118 -34380812 - L2 LINE L2 -54 3259 3171 1441 191 31 12 chrX 128219119 128219438 -34380492 - L1MA10 LINE L1 -1 6333 6009 2223 203 50 23 chrX 128219439 128220348 -34379582 - L1ME3 LINE L1 -235 5927 4953 843 274 180 16 chrX 128220352 128220725 -34379205 + L2 LINE L2 2864 3297 -16 222 37 0 0 chrX 128220728 128220755 -34379175 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2025 87 80 7 chrX 128221112 128221400 -34378530 + AluSg SINE Alu 1 309 -1 288 269 76 34 chrX 128221417 128221536 -34378394 - MIR SINE MIR -120 142 19 237 386 38 30 chrX 128222168 128222300 -34377630 - L2 LINE L2 -7 3265 3133 1246 171 42 0 chrX 128223536 128223752 -34376178 + AluJo SINE Alu 72 296 -16 22 0 0 0 chrX 128223761 128223783 -34376147 + AT_rich Low_complexity Low_complexity 1 22 0 493 269 77 6 chrX 128225226 128225402 -34374528 - MIR SINE MIR -54 208 18 958 196 4 44 chrX 128225797 128226022 -34373908 - MER20 DNA MER1_type 0 219 4 21 0 0 0 chrX 128226235 128226256 -34373674 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chrX 128226427 128226470 -34373460 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chrX 128228168 128228210 -34371720 + AT_rich Low_complexity Low_complexity 1 42 0 590 203 0 45 chrX 128228443 128228576 -34371354 - MER3 DNA MER1_type 0 209 83 22 0 0 0 chrX 128228905 128228927 -34371003 + AT_rich Low_complexity Low_complexity 1 22 0 278 179 0 6 chrX 128229005 128229069 -34370861 - MLT2C1 LTR ERVL -3 517 333 1640 195 36 6 chrX 128229164 128229497 -34370433 - MLT2C1 LTR ERVL -54 343 1 335 319 133 0 chrX 128230723 128230836 -34369094 - L2 LINE L2 -1 3271 3144 315 147 29 0 chrX 128230937 128231005 -34368925 - L1MD3 LINE L1 0 7995 7926 745 208 115 22 chrX 128231006 128231189 -34368741 + MLT2D LTR ERVL 3 202 -212 500 129 0 0 chrX 128231190 128231260 -34368670 + AluSq SINE Alu 84 153 -160 437 76 76 0 chrX 128232621 128232687 -34367243 - L1PA10 LINE L1 0 6168 6098 1598 175 7 0 chrX 128233374 128233659 -34366271 - AluJb SINE Alu -22 290 4 27 29 0 0 chrX 128234460 128234494 -34365436 + AT_rich Low_complexity Low_complexity 1 34 0 1614 208 9 53 chrX 128234513 128234554 -34365376 - MLT2D LTR ERVL 0 414 373 342 0 0 0 chrX 128234554 128234592 -34365338 + (TG)n Simple_repeat Simple_repeat 2 39 0 1614 208 9 53 chrX 128234592 128234983 -34364947 - MLT2D LTR ERVL -41 373 1 299 270 104 108 chrX 128235050 128235465 -34364465 + L2 LINE L2 1235 1647 -1667 909 163 56 28 chrX 128235476 128235654 -34364276 - AluJb SINE Alu -23 289 107 498 96 0 0 chrX 128235911 128235984 -34363946 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 182 304 29 14 chrX 128235998 128236067 -34363863 - L2 LINE L2 -46 3267 3198 2159 221 44 44 chrX 128237561 128238127 -34361803 - MLT1F1 LTR MaLR -1 566 1 3205 112 34 0 chrX 128238128 128238636 -34361294 + L1MA2 LINE L1 5779 6303 -1 22 35 0 0 chrX 128238874 128238903 -34361027 + AT_rich Low_complexity Low_complexity 1 29 0 207 296 25 12 chrX 128239285 128239366 -34360564 - MIR3 SINE MIR -7 201 120 15613 138 17 42 chrX 128239848 128243267 -34356663 - L1P4 LINE L1 -393 5775 2455 236 308 82 14 chrX 128243602 128243737 -34356193 + L2 LINE L2 1494 1641 -1673 1606 167 33 17 chrX 128243737 128244036 -34355894 - AluJo SINE Alu -8 304 1 3194 190 19 22 chrX 128244063 128244731 -34355199 - L1MA9 LINE L1 -38 6274 5609 561 290 18 86 chrX 128245042 128245263 -34354667 + MIR SINE MIR 32 237 -25 398 244 0 0 chrX 128245263 128245345 -34354585 + MSTB LTR MaLR 1 82 -344 201 284 0 81 chrX 128245350 128245393 -34354537 + MIR SINE MIR 195 231 -31 2229 158 72 20 chrX 128245393 128245798 -34354132 + MSTB LTR MaLR 1 426 0 201 284 0 81 chrX 128245798 128245828 -34354102 + MIR SINE MIR 231 262 0 420 323 31 8 chrX 128246020 128246150 -34353780 + MIR3 SINE MIR 69 201 -7 561 263 0 0 chrX 128246172 128246286 -34353644 + FLAM_A SINE Alu 4 117 -16 236 130 0 0 chrX 128246289 128246335 -34353595 - LTR66 LTR ERVL -171 439 394 22 0 0 0 chrX 128246917 128246939 -34352991 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chrX 128247049 128247095 -34352835 + AT_rich Low_complexity Low_complexity 1 46 0 1045 236 33 0 chrX 128248569 128248781 -34351149 - MER20 DNA MER1_type 0 219 1 216 0 0 0 chrX 128249335 128249359 -34350571 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7879 106 5 10 chrX 128249682 128250882 -34349048 + HERVH LTR ERV1 1794 2987 -4726 854 145 21 0 chrX 128250876 128251021 -34348909 + HERVH LTR ERV1 3140 3287 -4426 * 3217 119 6 6 chrX 128251019 128251513 -34348417 + HERVH LTR ERV1 3500 3993 -3720 4194 138 11 6 chrX 128251515 128252174 -34347756 + HERVH LTR ERV1 4488 5149 -2564 1323 143 19 0 chrX 128252175 128252391 -34347539 + HERVH LTR ERV1 5600 5819 -1894 * 2482 79 45 13 chrX 128252389 128252769 -34347161 + HERVH LTR ERV1 7322 7713 0 3401 55 0 11 chrX 128252769 128253222 -34346708 + LTR7 LTR ERV1 1 448 -2 1676 117 48 31 chrX 128253224 128253515 -34346415 + LTR29 LTR ERV1 327 622 0 4470 99 9 2 chrX 128253617 128254252 -34345678 - MER51C LTR ERV1 0 640 1 530 83 0 0 chrX 128254349 128254421 -34345509 + MER4B LTR ERV1 1 72 -538 7131 228 21 33 chrX 128254560 128257217 -34342713 - L1P3 LINE L1 -3671 2790 10 1664 184 13 10 chrX 128258881 128259186 -34340744 - AluJo SINE Alu -5 307 2 6803 126 14 29 chrX 128259371 128260484 -34339446 - Tigger1 DNA MER2_type 0 2418 1322 3879 115 105 37 chrX 128260484 128261483 -34338447 + MER11A LTR ERVK 1 1266 0 8404 130 27 1 chrX 128261483 128262776 -34337154 - Tigger1 DNA MER2_type -1091 1327 1 602 305 90 17 chrX 128262886 128262931 -34336999 - MIR SINE MIR -11 251 211 1007 114 72 0 chrX 128262931 128263098 -34336832 - L1MA5 LINE L1 -10 6290 6112 602 305 90 17 chrX 128263098 128263285 -34336645 - MIR SINE MIR -51 211 2 427 248 99 112 chrX 128263458 128263781 -34336149 + MLT1I LTR MaLR 19 337 -72 358 219 26 61 chrX 128264813 128264927 -34335003 + MLT1F1 LTR MaLR 25 134 -433 1872 202 32 52 chrX 128264928 128265243 -34334687 + L1MD3 LINE L1 7412 7715 -280 1463 195 29 53 chrX 128265243 128265617 -34334313 - MLT1A1 LTR MaLR 0 365 1 1872 202 32 52 chrX 128265617 128265806 -34334124 + L1MD3 LINE L1 7715 7906 -89 273 154 19 0 chrX 128265824 128265876 -34334054 - MLT2B1 LTR ERVL 0 520 468 356 183 30 53 chrX 128265879 128266048 -34333882 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 376 170 70 23 chrX 128266062 128266233 -34333697 + (TA)n Simple_repeat Simple_repeat 2 180 0 237 197 0 56 chrX 128266241 128266312 -34333618 - LTR66 LTR ERVL -171 439 373 * 425 265 39 0 chrX 128266286 128266388 -34333542 - MLT2B1 LTR ERVL -84 436 331 399 19 0 19 chrX 128266674 128266726 -34333204 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 1908 108 60 0 chrX 128266726 128266995 -34332935 - AluSq SINE Alu -28 285 1 4090 142 19 0 chrX 128267803 128268978 -34330952 + L1PA14 LINE L1 4614 5810 -351 4327 127 2 7 chrX 128268978 128269593 -34330337 + LTR9 LTR ERV1 1 612 0 9901 140 28 19 chrX 128269598 128271232 -34328698 + HUERS-P3 LTR ERV1 5 1652 -7267 639 205 0 0 chrX 128271229 128271346 -34328584 + HUERS-P3 LTR ERV1 1791 1907 -7012 * 25512 121 15 19 chrX 128271369 128274132 -34325798 + HUERS-P3 LTR ERV1 2069 4816 -4103 2423 93 0 0 chrX 128274132 128274443 -34325487 + AluY SINE Alu 1 311 0 25512 121 15 19 chrX 128274443 128275444 -34324486 + HUERS-P3 LTR ERV1 4816 5819 -3100 4694 170 20 6 chrX 128275444 128276233 -34323697 + HUERS-P3 LTR ERV1 6183 6982 -1937 832 177 11 17 chrX 128276224 128276399 -34323531 + LTR9-int LTR ERV1 3945 4118 -3698 * 528 202 8 16 chrX 128276395 128276524 -34323406 + LTR9-int LTR ERV1 2433 2560 -2455 * 1505 123 0 5 chrX 128276860 128277079 -34322851 + LTR9-int LTR ERV1 8701 8918 -1 4185 127 2 21 chrX 128277079 128277703 -34322227 + LTR9 LTR ERV1 1 612 0 2259 121 0 28 chrX 128277703 128278066 -34321864 + L1PA14 LINE L1 5807 6159 -2 1984 119 0 34 chrX 128278708 128279002 -34320928 + AluSg SINE Alu 2 285 -25 305 207 19 19 chrX 128279294 128279449 -34320481 + GA-rich Low_complexity Low_complexity 1 155 0 802 271 17 6 chrX 128279492 128279673 -34320257 + MLT1E LTR MaLR 9 191 -402 1079 233 86 4 chrX 128279708 128279953 -34319977 + MLT1E LTR MaLR 329 593 0 346 263 68 38 chrX 128280288 128280421 -34319509 - MIR3 SINE MIR -5 203 67 22 0 0 0 chrX 128283363 128283385 -34316545 + AT_rich Low_complexity Low_complexity 1 22 0 1602 94 4 4 chrX 128283385 128283620 -34316310 - L1MA1 LINE L1 0 6302 6068 740 154 0 26 chrX 128283626 128283743 -34316187 - FLAM_C SINE Alu -16 127 14 1434 96 0 23 chrX 128283743 128283963 -34315967 - L1MA1 LINE L1 -220 6082 5868 963 239 10 90 chrX 128285744 128285836 -34314094 + HERVL74 LTR ERVL 3046 3144 -2541 2228 87 10 10 chrX 128285836 128286147 -34313783 - AluY SINE Alu 0 311 1 963 239 10 90 chrX 128286147 128286364 -34313566 + HERVL74 LTR ERVL 3144 3330 -2355 2455 197 40 11 chrX 128286591 128287069 -34312861 + LTR53 LTR ERVL 1 492 -27 23 0 0 0 chrX 128287754 128287777 -34312153 + AT_rich Low_complexity Low_complexity 1 23 0 180 152 0 0 chrX 128288864 128288897 -34311033 + (AATAG)n Simple_repeat Simple_repeat 3 35 0 25 31 0 0 chrX 128289165 128289197 -34310733 + AT_rich Low_complexity Low_complexity 1 32 0 4816 113 24 52 chrX 128289639 128290441 -34309489 + MER4E LTR ERV1 1 779 0 1736 154 12 39 chrX 128290916 128291253 -34308677 + LTR29 LTR ERV1 1 328 -294 3566 44 0 7 chrX 128291254 128291705 -34308225 + LTR7 LTR ERV1 1 448 -2 6450 84 36 37 chrX 128291707 128293239 -34306691 + HERVH LTR ERV1 1 1596 -6117 4408 185 34 17 chrX 128293387 128294364 -34305566 - L1MB5 LINE L1 -8 6166 5165 4196 145 30 4 chrX 128295959 128296688 -34303242 - L1MC1 LINE L1 -1 6332 5585 749 196 24 10 chrX 128296697 128296906 -34303024 - L1MB5 LINE L1 -2912 3234 3023 282 247 39 0 chrX 128296917 128296994 -34302936 + L1ME1 LINE L1 2547 2626 -3914 * 560 158 51 17 chrX 128296985 128297162 -34302768 - L1MDa LINE L1 -4025 2515 2333 216 0 0 0 chrX 128297162 128297186 -34302744 + (CA)n Simple_repeat Simple_repeat 2 25 0 455 207 107 7 chrX 128297197 128297337 -34302593 - L1MDa LINE L1 -4621 1919 1766 3310 254 67 44 chrX 128297338 128298955 -34300975 - L1MDa LINE L1 -4823 1717 3 213 237 68 0 chrX 128299696 128299755 -34300175 + MIR SINE MIR 146 208 -54 267 284 81 0 chrX 128300042 128300116 -34299814 - L2 LINE L2 0 3313 3234 196 349 85 38 chrX 128300451 128300686 -34299244 - L3 LINE CR1 -333 1244 999 256 289 53 18 chrX 128300700 128300814 -34299116 - L1MC4 LINE L1 -1 8041 7924 1264 157 0 27 chrX 128300889 128301112 -34298818 - Tigger2a DNA MER2_type -217 217 1 364 240 8 40 chrX 128301128 128301253 -34298677 - L1ME2 LINE L1 -13 6151 6031 1432 217 40 17 chrX 128301329 128301679 -34298251 - L1ME2 LINE L1 -307 5857 5500 1063 251 28 6 chrX 128301693 128302012 -34297918 + L1ME1 LINE L1 4415 4740 -1800 286 237 0 0 chrX 128302112 128302171 -34297759 + L1ME1 LINE L1 5451 5509 -1031 28 0 0 0 chrX 128302193 128302221 -34297709 + AT_rich Low_complexity Low_complexity 1 28 0 560 274 6 0 chrX 128302221 128302385 -34297545 - L1ME LINE L1 -346 5818 5654 1418 48 5 11 chrX 128302385 128302571 -34297359 - L1PA4 LINE L1 0 6155 5971 2563 230 75 36 chrX 128302583 128303549 -34296381 + L1ME1 LINE L1 5554 6555 -5 22 94 0 0 chrX 128305186 128305250 -34294680 + AT_rich Low_complexity Low_complexity 1 64 0 3935 250 41 30 chrX 128305789 128306942 -34292988 + L1M4 LINE L1 1 1165 -5377 2843 224 22 14 chrX 128307147 128307981 -34291949 + L1M4 LINE L1 2458 3304 -3340 315 289 16 0 chrX 128308282 128308403 -34291527 + MER103 DNA DNA 44 166 0 309 328 39 0 chrX 128308746 128308874 -34291056 + MIR SINE MIR 69 201 -61 1970 194 14 3 chrX 128309263 128309613 -34290317 + MLT1A1 LTR MaLR 1 354 -11 377 236 94 31 chrX 128309647 128309774 -34290156 - MIR SINE MIR 0 262 128 197 263 88 0 chrX 128309774 128309831 -34290099 - MIR SINE MIR -105 157 96 315 298 0 0 chrX 128309859 128309943 -34289987 + MIR SINE MIR 174 257 -5 2190 115 0 0 chrX 128309948 128310297 -34289633 + L1PA14 LINE L1 5835 6183 0 493 167 183 8 chrX 128310379 128310499 -34289431 + MIR SINE MIR 122 262 0 283 288 0 14 chrX 128310491 128310564 -34289366 - MIR SINE MIR -107 155 84 * 1497 237 14 17 chrX 128310676 128311026 -34288904 + LTR53 LTR ERVL 171 519 0 4151 251 58 51 chrX 128312121 128314092 -34285838 + HERVL74 LTR ERVL 528 2568 -988 2270 104 3 0 chrX 128314119 128314428 -34285502 - AluSp SINE Alu -3 310 1 1597 229 101 35 chrX 128314428 128314855 -34285075 + MLT2B1 LTR ERVL 64 518 -2 3391 230 20 16 chrX 128314858 128315553 -34284377 + HERVL74 LTR ERVL 2421 3118 -2567 2541 45 10 10 chrX 128315572 128315883 -34284047 - AluY SINE Alu 0 311 1 15251 169 119 7 chrX 128515959 128521049 -34078881 - L1PBa LINE L1 -1186 5676 1 449 213 0 32 chrX 128521068 128521162 -34078768 - MIR SINE MIR -73 189 99 21 36 0 0 chrX 128522260 128522288 -34077642 + AT_rich Low_complexity Low_complexity 1 28 0 346 314 58 0 chrX 128522334 128522455 -34077475 + MIR3 SINE MIR 13 140 -68 252 0 0 0 chrX 128522521 128522549 -34077381 + (CAA)n Simple_repeat Simple_repeat 2 29 0 211 262 242 91 chrX 128522807 128522939 -34076991 + MIR SINE MIR 33 183 -79 27 62 0 0 chrX 128523837 128523885 -34076045 + AT_rich Low_complexity Low_complexity 1 48 0 225 267 12 35 chrX 128524879 128524965 -34074965 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 244 196 18 36 chrX 128525529 128525585 -34074345 - L2 LINE L2 -5 3308 3254 585 247 18 36 chrX 128525588 128525754 -34074176 - MER69A DNA AcHobo -14 163 1 401 292 247 39 chrX 128525756 128526064 -34073866 - L2 LINE L2 -60 3253 2882 401 300 14 29 chrX 128526068 128526208 -34073722 - L2 LINE L2 -494 2820 2683 1866 104 3 78 chrX 128529347 128529654 -34070276 - AluSq SINE Alu -27 286 3 2245 107 3 0 chrX 128529906 128530205 -34069725 - AluSp SINE Alu -11 302 3 2444 65 0 0 chrX 128530689 128530982 -34068948 - AluY SINE Alu -17 294 2 21 0 0 0 chrX 128531233 128531254 -34068676 + AT_rich Low_complexity Low_complexity 1 21 0 182 353 39 0 chrX 128531735 128531837 -34068093 - L2 LINE L2 -41 3272 3167 318 290 19 19 chrX 128532531 128532638 -34067292 - MIR3 SINE MIR -3 205 99 301 131 33 0 chrX 128532638 128532699 -34067231 + GA-rich Low_complexity Low_complexity 1 63 0 287 229 9 95 chrX 128532699 128532804 -34067126 - MIR SINE MIR -93 115 20 1986 119 0 4 chrX 128533089 128533366 -34066564 - AluSq SINE Alu -19 294 19 2287 82 3 0 chrX 128534288 128534599 -34065331 - AluY SINE Alu 0 312 1 326 336 57 0 chrX 128535204 128535326 -34064604 + MIR SINE MIR 19 147 -115 21 0 0 0 chrX 128535507 128535528 -34064402 + AT_rich Low_complexity Low_complexity 1 21 0 1634 244 134 59 chrX 128536154 128536922 -34063008 + LTR1B LTR ERV1 1 826 0 456 276 62 80 chrX 128537632 128537857 -34062073 - MIR SINE MIR -40 222 2 545 258 88 25 chrX 128538473 128538713 -34061217 - HAL1 LINE L1 0 2507 2253 1074 241 150 45 chrX 128538753 128539360 -34060570 - HAL1 LINE L1 -737 1770 1100 299 78 20 0 chrX 128539371 128539422 -34060508 + (ATG)n Simple_repeat Simple_repeat 3 54 0 313 289 104 0 chrX 128539448 128539583 -34060347 - HAL1 LINE L1 -1575 932 784 380 361 35 22 chrX 128539588 128539818 -34060112 - HAL1 LINE L1 -1814 693 461 2319 96 0 0 chrX 128539822 128540114 -34059816 - AluSc SINE Alu -17 292 1 251 248 16 120 chrX 128540132 128540257 -34059673 - HAL1 LINE L1 -2118 389 278 5042 81 1 5 chrX 128540331 128541000 -34058930 + PABL_B LTR ERV1 1 667 0 23 0 0 0 chrX 128542168 128542191 -34057739 + AT_rich Low_complexity Low_complexity 1 23 0 1909 128 35 17 chrX 128542196 128542484 -34057446 - AluSx SINE Alu -19 293 1 233 233 27 0 chrX 128542489 128542562 -34057368 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 669 284 101 36 chrX 128543689 128544383 -34055547 + L1ME LINE L1 3286 4024 -2122 * 2887 182 48 5 chrX 128544382 128544960 -34054970 + L1MB7 LINE L1 5557 6159 -25 360 267 127 23 chrX 128544977 128545198 -34054732 + L1ME LINE L1 4015 4258 -1888 4614 194 31 44 chrX 128545231 128545597 -34054333 + L1MC2 LINE L1 4901 5270 -1074 2096 124 7 0 chrX 128545597 128545887 -34054043 - AluSx SINE Alu -20 292 1 4614 194 31 44 chrX 128545887 128546962 -34052968 + L1MC2 LINE L1 5270 6336 -8 263 224 90 39 chrX 128546994 128547150 -34052780 + L1ME LINE L1 4279 4442 -1704 965 26 0 0 chrX 128547294 128547407 -34052523 + L1PA5 LINE L1 6035 6147 -7 25 31 0 0 chrX 128547413 128547445 -34052485 + AT_rich Low_complexity Low_complexity 1 32 0 307 254 146 30 chrX 128547567 128547732 -34052198 + L1ME LINE L1 5262 5445 -725 2047 119 31 0 chrX 128547863 128548182 -34051748 - L1PB2 LINE L1 -6 6145 5817 364 294 110 0 chrX 128548240 128548376 -34051554 + L1ME LINE L1 5500 5650 -512 255 93 0 0 chrX 128548446 128548489 -34051441 + (CA)n Simple_repeat Simple_repeat 2 44 0 359 313 142 25 chrX 128548560 128548800 -34051130 - L2 LINE L2 -437 2877 2610 431 258 72 60 chrX 128549136 128549548 -34050382 + L1MC4a LINE L1 5548 5891 -230 316 233 79 127 chrX 128549715 128549904 -34050026 + L2 LINE L2 3134 3313 0 233 200 0 0 chrX 128549912 128549957 -34049973 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 647 326 47 0 chrX 128551064 128551279 -34048651 + MIR SINE MIR 26 250 -12 238 338 0 0 chrX 128551361 128551429 -34048501 + MIR SINE MIR 33 100 -162 1185 180 34 5 chrX 128551462 128551668 -34048262 + AluJo SINE Alu 1 212 -100 1137 108 0 0 chrX 128551669 128551845 -34048085 + (TA)n Simple_repeat Simple_repeat 2 177 0 237 299 0 0 chrX 128553170 128553237 -34046693 + L2 LINE L2 3247 3313 0 2507 184 2 122 chrX 128553528 128554158 -34045772 - MLT2B3 LTR ERVL 0 554 1 2279 188 19 12 chrX 128554483 128554904 -34045026 + MSTB LTR MaLR 1 424 -2 8668 189 8 24 chrX 128554906 128556569 -34043361 + MSTB-int LTR MaLR 1 1637 -14 2346 145 50 5 chrX 128556580 128556959 -34042971 + MSTB LTR MaLR 1 396 -30 22 0 0 0 chrX 128556960 128556982 -34042948 + AT_rich Low_complexity Low_complexity 1 22 0 403 319 2 42 chrX 128557241 128557417 -34042513 + MIR SINE MIR 27 191 -68 23 33 0 0 chrX 128558121 128558151 -34041779 + AT_rich Low_complexity Low_complexity 1 30 0 608 75 0 0 chrX 128559318 128559398 -34040532 - MADE1 DNA Mariner 0 80 1 200 231 0 39 chrX 128560601 128560653 -34039277 + (CGTG)n Simple_repeat Simple_repeat 4 53 0 4611 196 15 20 chrX 128562931 128563954 -34035976 - L1 LINE L1 -1907 4239 3222 279 326 51 36 chrX 128564282 128564478 -34035452 + MIR SINE MIR 8 206 -56 1420 253 43 29 chrX 128564628 128565003 -34034927 - MSTD LTR MaLR -2 394 15 21 36 0 0 chrX 128565406 128565434 -34034496 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chrX 128566166 128566202 -34033728 + AT_rich Low_complexity Low_complexity 1 36 0 255 204 0 0 chrX 128566667 128566721 -34033209 + (CATA)n Simple_repeat Simple_repeat 2 55 0 487 269 38 25 chrX 128567232 128567302 -34032628 + MIR SINE MIR 88 156 -106 2284 159 140 71 chrX 128567302 128567946 -34031984 - LTR1 LTR ERV1 0 785 82 1955 90 3 27 chrX 128567946 128568245 -34031685 - AluY SINE Alu 0 311 20 2284 159 140 71 chrX 128568245 128568334 -34031596 - LTR1 LTR ERV1 -703 82 1 487 269 38 25 chrX 128568334 128568423 -34031507 + MIR SINE MIR 156 249 -13 555 238 17 147 chrX 128568553 128568852 -34031078 - L2 LINE L2 0 3313 3054 644 329 120 25 chrX 128568872 128569279 -34030651 - L2 LINE L2 -1 3312 2867 702 327 203 32 chrX 128569323 128569815 -34030115 - L2 LINE L2 -562 2752 2177 225 0 0 0 chrX 128570724 128570749 -34029181 + (GA)n Simple_repeat Simple_repeat 2 26 0 423 57 0 0 chrX 128572056 128572109 -34027821 + MADE1 DNA Mariner 1 53 -27 260 109 0 22 chrX 128572198 128572244 -34027686 + MADE1 DNA Mariner 35 79 -1 2377 155 35 16 chrX 128572408 128572834 -34027096 - Tigger2a DNA MER2_type 0 434 1 21 36 0 0 chrX 128573869 128573897 -34026033 + AT_rich Low_complexity Low_complexity 1 28 0 243 294 87 11 chrX 128573972 128574064 -34025866 + L1MC/D LINE L1 5566 5664 -2144 1651 86 0 8 chrX 128574116 128574350 -34025580 - L1MA1 LINE L1 0 6302 6071 271 169 14 56 chrX 128574391 128574462 -34025468 + L1MC/D LINE L1 5731 5798 -2244 21 0 0 0 chrX 128574547 128574568 -34025362 + AT_rich Low_complexity Low_complexity 1 21 0 239 341 45 15 chrX 128574793 128574925 -34025005 - MIR SINE MIR -6 256 121 1000 171 30 34 chrX 128574925 128575188 -34024742 - MER33 DNA MER1_type -62 262 1 245 295 33 57 chrX 128575188 128575310 -34024620 + L2 LINE L2 3189 3307 -6 3491 149 4 0 chrX 128575900 128576452 -34023478 - L1PB4 LINE L1 -97 6059 5506 2245 107 0 3 chrX 128577893 128578202 -34021728 - AluSc SINE Alu -1 308 1 406 119 134 0 chrX 128579472 128579573 -34020357 + L1PA10 LINE L1 6072 6181 0 452 175 53 12 chrX 128579669 128579840 -34020090 + (TATG)n Simple_repeat Simple_repeat 3 180 0 193 146 42 0 chrX 128579871 128579919 -34020011 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 549 300 105 5 chrX 128580023 128580213 -34019717 - L2 LINE L2 -281 3032 2824 513 319 35 39 chrX 128581200 128581485 -34018445 + L2 LINE L2 3028 3311 -2 386 289 29 10 chrX 128581692 128581796 -34018134 - MER5B DNA MER1_type -1 177 72 454 275 124 41 chrX 128581852 128582070 -34017860 + MIR SINE MIR 18 253 -9 2965 159 48 2 chrX 128582284 128582788 -34017142 + MER1A DNA MER1_type 1 527 0 952 219 92 41 chrX 128583201 128583570 -34016360 - L1MB8 LINE L1 -13 7584 7197 442 270 7 22 chrX 128583570 128583707 -34016223 - MLT1C LTR MaLR 0 467 333 6100 179 27 10 chrX 128583736 128584826 -34015104 - L1M1 LINE L1 -5139 2426 1319 * 9640 200 23 41 chrX 128584824 128585248 -34014682 - L1MB8 LINE L1 -1524 6041 5611 2165 105 0 0 chrX 128585248 128585533 -34014397 + AluSg SINE Alu 1 285 -25 9640 200 23 41 chrX 128585533 128587863 -34012067 - L1MB8 LINE L1 -1954 5611 3345 7934 208 30 9 chrX 128587857 128587905 -34012025 - L1MB8 LINE L1 -4142 3423 3377 * 440 70 0 0 chrX 128587905 128587962 -34011968 - L1PA6 LINE L1 -7 6147 6091 7934 208 30 9 chrX 128587962 128591056 -34008874 - L1MB8 LINE L1 -4188 3377 92 2186 246 31 44 chrX 128591106 128592053 -34007877 - L1M4c LINE L1 -4819 2140 1183 410 301 57 26 chrX 128592115 128592308 -34007622 - L1M4c LINE L1 -5662 1193 995 2312 85 0 3 chrX 128592342 128592649 -34007281 + AluSg SINE Alu 1 306 -4 294 271 107 36 chrX 128592813 128592972 -34006958 - L1M4c LINE L1 -6319 536 390 1783 61 153 0 chrX 128592972 128593233 -34006697 - AluY SINE Alu 0 301 1 294 271 107 36 chrX 128593233 128593283 -34006647 - L1M4c LINE L1 -6465 390 8 21 0 0 0 chrX 128594080 128594101 -34005829 + AT_rich Low_complexity Low_complexity 1 21 0 359 169 0 13 chrX 128594581 128594658 -34005272 + CT-rich Low_complexity Low_complexity 3 78 0 210 37 0 0 chrX 128594664 128594691 -34005239 + (TC)n Simple_repeat Simple_repeat 2 28 0 534 229 271 5 chrX 128594693 128594881 -34005049 + MIR SINE MIR 3 240 -22 2498 56 0 3 chrX 128595157 128595461 -34004469 + AluY SINE Alu 1 303 -8 218 329 57 0 chrX 128595574 128595644 -34004286 + L2 LINE L2 3240 3313 0 2084 125 6 13 chrX 128599418 128599730 -34000200 + AluSx SINE Alu 1 310 -2 268 264 22 11 chrX 128600632 128600723 -33999207 + CT-rich Low_complexity Low_complexity 2 93 0 1404 326 81 42 chrX 128600789 128602128 -33997802 - L2 LINE L2 0 3313 1885 6100 152 17 12 chrX 128602150 128602312 -33997618 - L1MA3 LINE L1 0 6305 6145 2636 67 79 139 chrX 128602312 128602793 -33997137 + MLT2A2 LTR ERVL 2 453 0 6100 152 17 12 chrX 128602793 128604059 -33995871 - L1MA3 LINE L1 -160 6145 4866 268 304 130 25 chrX 128604138 128604299 -33995631 - MIR SINE MIR -73 189 12 322 330 143 0 chrX 128605380 128605562 -33994368 - MIR SINE MIR -2 260 53 722 344 20 12 chrX 128605823 128606076 -33993854 - MIR SINE MIR 0 262 8 958 192 104 133 chrX 128606990 128607375 -33992555 - MLT1A2 LTR MaLR 0 374 1 2968 109 0 0 chrX 128608443 128608882 -33991048 - L1P LINE L1 -1394 4752 4314 1833 84 0 31 chrX 128608882 128609141 -33990789 + L1PA8A LINE L1 5876 6128 -3 21 36 0 0 chrX 128609326 128609354 -33990576 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chrX 128609488 128609517 -33990413 + AT_rich Low_complexity Low_complexity 1 29 0 289 214 35 117 chrX 128609658 128609803 -33990127 - L1P LINE L1 -2008 4138 4006 419 315 0 0 chrX 128610101 128610212 -33989718 - MLT1L LTR MaLR -362 253 143 13535 150 26 14 chrX 128610620 128613010 -33986920 + Tigger1 DNA MER2_type 1 2418 0 362 288 29 68 chrX 128613085 128613290 -33986640 - L1M4 LINE L1 -2993 3153 2957 23478 174 19 32 chrX 128613572 128616898 -33983032 - L1PA11 LINE L1 0 7612 4247 9339 35 2 215 chrX 128616898 128618656 -33981274 - SVA Other Other -2 1384 1 23478 174 19 32 chrX 128618656 128621165 -33978765 - L1PA11 LINE L1 -3365 4247 812 195 69 0 0 chrX 128621165 128621194 -33978736 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 23478 174 19 32 chrX 128621194 128621987 -33977943 - L1PA11 LINE L1 -6800 812 11 708 291 42 28 chrX 128622112 128622526 -33977404 - L1ME4a LINE L1 -208 5913 5483 204 40 0 0 chrX 128622526 128622551 -33977379 + (TTA)n Simple_repeat Simple_repeat 2 26 0 708 291 42 28 chrX 128622551 128622616 -33977314 - L1ME4a LINE L1 -638 5483 5420 1817 160 3 3 chrX 128622636 128622923 -33977007 + AluSx SINE Alu 1 287 -25 30 0 0 0 chrX 128622927 128622957 -33976973 + AT_rich Low_complexity Low_complexity 1 30 0 566 298 124 51 chrX 128622989 128623522 -33976408 - L1ME4a LINE L1 -801 5345 4774 21 0 0 0 chrX 128623834 128623855 -33976075 + AT_rich Low_complexity Low_complexity 1 21 0 836 210 68 0 chrX 128624114 128624290 -33975640 + MER5A DNA MER1_type 2 189 0 350 353 0 16 chrX 128624923 128625045 -33974885 + MER5A DNA MER1_type 66 185 -4 451 242 57 16 chrX 128626345 128626469 -33973461 + MER94 DNA DNA 1 129 -5 1866 117 3 91 chrX 128626792 128627134 -33972796 + AluJo SINE Alu 1 312 0 897 231 60 4 chrX 128627165 128627433 -33972497 - MER33 DNA MER1_type -36 288 6 24 32 0 0 chrX 128629843 128629874 -33970056 + AT_rich Low_complexity Low_complexity 1 31 0 321 253 30 40 chrX 128631050 128631149 -33968781 + MER5A DNA MER1_type 17 114 -75 698 245 146 30 chrX 128631304 128631537 -33968393 + MIR SINE MIR 1 260 -2 2437 195 60 45 chrX 128631671 128632287 -33967643 - MLT1E2 LTR MaLR 0 626 2 2287 118 8 8 chrX 128632475 128632830 -33967100 - THE1A LTR MaLR 0 355 1 964 280 52 57 chrX 128633326 128633450 -33966480 + MLT1J LTR MaLR 73 196 -315 1275 207 106 69 chrX 128633450 128633826 -33966104 - MLT1B LTR MaLR 0 390 1 964 280 52 57 chrX 128633826 128634105 -33965825 + MLT1J LTR MaLR 196 474 -37 22 35 0 0 chrX 128634178 128634207 -33965723 + AT_rich Low_complexity Low_complexity 1 29 0 1900 132 20 17 chrX 128635067 128635362 -33964568 - AluSx SINE Alu -15 297 2 25 0 0 0 chrX 128635809 128635834 -33964096 + AT_rich Low_complexity Low_complexity 1 25 0 1339 241 90 68 chrX 128636442 128637020 -33962910 - MLT1E LTR MaLR 0 593 3 231 299 72 10 chrX 128637228 128637325 -33962605 - MLT1J2 LTR MaLR -284 166 64 1510 200 48 79 chrX 128637331 128637812 -33962118 + MER31B LTR ERV1 1 466 0 357 162 15 0 chrX 128637962 128638030 -33961900 - L1MB8 LINE L1 -16 6162 6094 411 339 123 22 chrX 128638270 128638497 -33961433 - MIR SINE MIR -11 251 2 1003 141 12 0 chrX 128640182 128640352 -33959578 - L1MA7 LINE L1 0 6291 6120 677 180 120 3 chrX 128640369 128640539 -33959391 + L1MA4A LINE L1 6118 6304 0 3046 171 75 42 chrX 128640828 128641511 -33958419 - MER44D DNA MER2_type 0 705 1 226 270 34 45 chrX 128642607 128642696 -33957234 - MIR SINE MIR -106 156 69 315 0 0 0 chrX 128643066 128643101 -33956829 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 214 309 60 12 chrX 128643221 128643305 -33956625 + MIR SINE MIR 20 107 -155 799 261 67 90 chrX 128643469 128643959 -33955971 + MLT1J LTR MaLR 4 482 -29 21 0 0 0 chrX 128644527 128644548 -33955382 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chrX 128644662 128644686 -33955244 + AT_rich Low_complexity Low_complexity 1 24 0 577 275 87 13 chrX 128645581 128645810 -33954120 + L2 LINE L2 2941 3186 -127 5704 121 8 28 chrX 128646541 128648094 -33951836 - L1PA16 LINE L1 -9 6157 4625 2205 182 20 12 chrX 128648101 128648697 -33951233 + L1PA15-16 LINE L1 1905 2507 -3639 343 364 108 46 chrX 128648705 128649469 -33950461 - L2 LINE L2 -606 2708 1886 4698 16 0 48 chrX 128649469 128649866 -33950064 - L1PA3 LINE L1 -3 6152 5789 5764 65 56 12 chrX 128649866 128651104 -33948826 - SVA Other Other -518 1006 3 4698 16 0 48 chrX 128651104 128651287 -33948643 - L1PA3 LINE L1 -366 5789 5599 343 364 108 46 chrX 128651287 128651368 -33948562 - L2 LINE L2 -1428 1886 1811 964 279 94 48 chrX 128651392 128651869 -33948061 - MLT1L LTR MaLR -8 607 109 398 274 17 8 chrX 128651897 128652014 -33947916 + L1ME3A LINE L1 6049 6166 -4 261 273 50 86 chrX 128652028 128652167 -33947763 - MLT1L LTR MaLR -478 137 4 319 172 50 61 chrX 128652376 128652475 -33947455 - MER20B DNA MER1_type 0 783 686 286 190 17 0 chrX 128652494 128652550 -33947380 - MER20B DNA MER1_type -206 577 521 2045 141 116 0 chrX 128652550 128652911 -33947019 - MER57A LTR ERV1 0 403 1 367 93 56 0 chrX 128653072 128653126 -33946804 + Charlie3 DNA MER1_type 2646 2702 -8 1610 234 10 22 chrX 128653127 128653529 -33946401 + L1MC2 LINE L1 610 1006 -5039 440 184 9 0 chrX 128653548 128653657 -33946273 + L1MC2 LINE L1 1272 1381 -5183 189 0 0 0 chrX 128653688 128653709 -33946221 + (T)n Simple_repeat Simple_repeat 1 21 0 323 213 64 39 chrX 128653709 128653838 -33946092 - LTR19C LTR ERV1 -466 146 28 1316 190 81 15 chrX 128653885 128653900 -33946030 + L1MC2 LINE L1 1815 1828 -4736 1098 259 47 56 chrX 128653900 128654368 -33945562 - MLT2C2 LTR ERVL 0 464 1 1316 190 81 15 chrX 128654368 128654901 -33945029 + L1MC2 LINE L1 1828 2337 -4227 3779 180 8 3 chrX 128654901 128655558 -33944372 - MER50 LTR ERV1 -23 711 52 8811 192 12 11 chrX 128655560 128657795 -33942135 + L1M1 LINE L1 2897 5137 -2428 1953 163 3 0 chrX 128657795 128658096 -33941834 - AluSx SINE Alu -10 302 1 8811 192 12 11 chrX 128658096 128658494 -33941436 + L1M1 LINE L1 5137 5533 -2032 5589 116 2 8 chrX 128658514 128659357 -33940573 + L1MA1 LINE L1 5439 6276 -26 291 175 0 0 chrX 128659361 128659418 -33940512 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 2160 258 54 13 chrX 128659463 128660166 -33939764 + L1MC2 LINE L1 4021 4752 -1812 2628 165 33 4 chrX 128660293 128660809 -33939121 - L1MA9 LINE L1 -5 6307 5777 242 203 25 38 chrX 128660823 128660902 -33939028 + L1MC4 LINE L1 6624 6701 -1341 236 196 0 0 chrX 128660874 128660920 -33939010 - L1MC4 LINE L1 -1339 6703 6658 * 5182 189 19 53 chrX 128660922 128661321 -33938609 + L1MC2 LINE L1 4728 5139 -1623 2405 129 5 0 chrX 128661321 128661692 -33938238 + THE1C LTR MaLR 1 373 -2 9668 121 31 40 chrX 128661693 128663288 -33936642 + THE1C-int LTR MaLR 1 1580 0 2420 132 5 3 chrX 128663290 128663661 -33936269 + THE1C LTR MaLR 3 374 -1 5182 189 19 53 chrX 128663661 128665875 -33934055 + L1MC2 LINE L1 5140 6683 -79 2321 106 3 0 chrX 128665875 128666206 -33933724 - AluSp SINE Alu 0 313 1 5182 189 19 53 chrX 128666206 128666275 -33933655 + L1MC2 LINE L1 6683 6753 -9 25 65 0 0 chrX 128666874 128666920 -33933010 + AT_rich Low_complexity Low_complexity 1 46 0 361 320 46 20 chrX 128668198 128668351 -33931579 - MER20B DNA MER1_type -268 515 359 903 201 0 11 chrX 128668388 128668588 -33931342 + FRAM SINE Alu 1 176 0 634 271 100 17 chrX 128668588 128668879 -33931051 - MER20B DNA MER1_type -466 317 3 1497 164 6 78 chrX 128669148 128669508 -33930422 + L1MA10 LINE L1 6000 6333 -1 421 326 7 14 chrX 128669851 128669995 -33929935 + L1MEd LINE L1 446 588 -5531 191 245 41 0 chrX 128670026 128670075 -33929855 + MER5B DNA MER1_type 2 52 -126 1232 215 131 50 chrX 128670260 128670487 -33929443 + MER66A LTR ERV1 1 208 -270 2311 91 7 0 chrX 128670487 128670796 -33929134 - AluY SINE Alu 0 311 1 1232 215 131 50 chrX 128670796 128671010 -33928920 + MER66A LTR ERV1 208 478 0 21 36 0 0 chrX 128671116 128671144 -33928786 + AT_rich Low_complexity Low_complexity 1 28 0 302 288 50 38 chrX 128671348 128671508 -33928422 + L1M4 LINE L1 40 201 -6658 1195 250 82 54 chrX 128672041 128672672 -33927258 + L1M4 LINE L1 1188 1836 -5019 1229 278 119 13 chrX 128672684 128673433 -33926497 + L1M4 LINE L1 4151 5003 -1954 921 150 50 44 chrX 128673433 128673613 -33926317 + AluJb SINE Alu 71 251 -61 715 218 88 15 chrX 128673616 128673877 -33926053 + L1M4 LINE L1 4963 5242 -1715 401 231 30 15 chrX 128673878 128674013 -33925917 + L1M4 LINE L1 5320 5456 -1501 290 115 16 0 chrX 128674913 128674974 -33924956 + (TA)n Simple_repeat Simple_repeat 2 63 0 756 262 33 24 chrX 128675473 128675683 -33924247 + MIR SINE MIR 5 216 -46 1587 78 0 0 chrX 128675708 128675925 -33924005 - L1PA5 LINE L1 0 6154 5938 231 282 0 13 chrX 128676934 128677012 -33922918 + CT-rich Low_complexity Low_complexity 2 78 0 332 208 10 0 chrX 128677238 128677334 -33922596 + (TA)n Simple_repeat Simple_repeat 2 98 0 226 345 35 0 chrX 128677449 128677536 -33922394 - MIR SINE MIR -96 166 77 438 252 46 0 chrX 128677612 128677743 -33922187 + MER103 DNA DNA 14 150 -16 23 33 0 0 chrX 128678146 128678176 -33921754 + AT_rich Low_complexity Low_complexity 1 30 0 523 250 0 8 chrX 128678357 128678388 -33921542 - L1MA10 LINE L1 -23 6311 6281 2431 237 89 51 chrX 128678388 128679481 -33920449 - L1ME1 LINE L1 -45 6121 4978 3029 228 68 14 chrX 128679679 128680704 -33919226 - L1ME1 LINE L1 -1518 4628 3548 620 255 54 5 chrX 128680734 128680959 -33918971 + L1M4 LINE L1 2845 3097 -3049 700 216 222 39 chrX 128680966 128681304 -33918626 - L1MC4 LINE L1 -43 7999 7600 317 309 18 45 chrX 128681304 128681414 -33918516 - MIR3 SINE MIR -47 161 55 226 217 0 0 chrX 128681477 128681523 -33918407 + (TG)n Simple_repeat Simple_repeat 1 46 0 1920 117 6 59 chrX 128682977 128683301 -33916629 + L1M2 LINE L1 5463 5769 -543 476 286 94 32 chrX 128684092 128684767 -33915163 - L1ME4a LINE L1 -207 5914 5193 26 0 0 0 chrX 128684772 128684798 -33915132 + AT_rich Low_complexity Low_complexity 1 26 0 1206 130 42 0 chrX 128685346 128685561 -33914369 - L1MC3 LINE L1 -1 7784 7561 203 211 0 19 chrX 128685593 128685645 -33914285 + (TA)n Simple_repeat Simple_repeat 2 52 0 7081 235 49 31 chrX 128685671 128686589 -33913341 - L1MB4 LINE L1 -36 6144 5244 2392 91 0 0 chrX 128686589 128686897 -33913033 - AluSg SINE Alu -2 308 1 7081 235 49 31 chrX 128686897 128689413 -33910517 - L1MB4 LINE L1 -936 5244 2647 976 197 15 39 chrX 128689558 128689761 -33910169 - MLT1A1 LTR MaLR -164 201 4 214 378 31 8 chrX 128689862 128689989 -33909941 - L2 LINE L2 -250 3022 2893 269 350 15 46 chrX 128690096 128690293 -33909637 + L2 LINE L2 3117 3307 -6 22 35 0 0 chrX 128690629 128690658 -33909272 + AT_rich Low_complexity Low_complexity 1 29 0 1165 279 94 56 chrX 128690666 128690816 -33909114 - HAL1 LINE L1 -31 2476 2333 2078 85 28 3 chrX 128690816 128691098 -33908832 - AluSc SINE Alu -20 289 1 1165 279 94 56 chrX 128691098 128691780 -33908150 - HAL1 LINE L1 -174 2333 1613 666 232 12 0 chrX 128691789 128691953 -33907977 + LTR49-int LTR ERV1 5625 5790 -541 664 223 14 0 chrX 128692026 128692165 -33907765 + LTR49-int LTR ERV1 6083 6223 -108 430 303 48 75 chrX 128694254 128694442 -33905488 - MER91A DNA MER1_type -11 185 3 38 39 0 0 chrX 128694844 128694896 -33905034 + AT_rich Low_complexity Low_complexity 1 52 0 518 317 93 35 chrX 128695025 128695507 -33904423 - L1ME LINE L1 -320 5801 5292 23 33 0 0 chrX 128695514 128695544 -33904386 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrX 128695753 128695789 -33904141 + AT_rich Low_complexity Low_complexity 1 36 0 235 341 23 11 chrX 128695805 128695893 -33904037 + MIR SINE MIR 58 146 -116 23 33 0 0 chrX 128696985 128697015 -33902915 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 128699050 128699073 -33900857 + AT_rich Low_complexity Low_complexity 1 23 0 2247 158 0 13 chrX 128700555 128700935 -33898995 + THE1C LTR MaLR 1 375 0 201 108 0 0 chrX 128704131 128704168 -33895762 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 * 243 170 0 0 chrX 128704159 128704206 -33895724 + (TG)n Simple_repeat Simple_repeat 2 48 0 1726 239 22 0 chrX 128706141 128706510 -33893420 - MSTD LTR MaLR 0 396 20 643 195 0 0 chrX 128706700 128706813 -33893117 + FLAM_A SINE Alu 2 114 -19 686 289 67 10 chrX 128707666 128707874 -33892056 - MIR SINE MIR -14 248 29 441 0 0 0 chrX 128708328 128708377 -33891553 + (TG)n Simple_repeat Simple_repeat 1 49 0 566 241 7 48 chrX 128708796 128708941 -33890989 + MIR SINE MIR 10 148 -114 237 236 110 94 chrX 128708977 128709104 -33890826 + MIR SINE MIR 67 195 -67 422 307 74 11 chrX 128710164 128710340 -33889590 - MER5A DNA MER1_type -2 187 1 841 220 35 5 chrX 128710600 128710800 -33889130 + Charlie1 DNA MER1_type 39 244 -2517 945 144 26 0 chrX 128710816 128710969 -33888961 + MER39B LTR ERV1 1 157 -496 2258 120 59 25 chrX 128710972 128711415 -33888515 + L1M1 LINE L1 2387 2844 -4721 * 11414 203 63 5 chrX 128711411 128714578 -33885352 + L1M1 LINE L1 3697 7054 -669 2302 98 17 20 chrX 128714579 128714935 -33884995 - L1M1 LINE L1 -535 5770 5416 1628 83 0 5 chrX 128715035 128715251 -33884679 + THE1C LTR MaLR 161 375 0 301 330 66 0 chrX 128717753 128717859 -33882071 - L2 LINE L2 0 3313 3201 587 232 17 11 chrX 128717908 128718089 -33881841 - L1ME2 LINE L1 -318 5846 5665 3131 247 36 57 chrX 128718164 128719543 -33880387 + L1MC3 LINE L1 2305 3654 -2492 913 199 86 0 chrX 128719603 128719824 -33880106 + MER34 LTR ERV1 27 266 -276 319 198 91 66 chrX 128720287 128720408 -33879522 - MER34-int LTR ERV1 -4836 1495 1372 502 304 79 34 chrX 128720446 128720712 -33879218 - MER34-int LTR ERV1 -5759 572 295 1779 216 81 40 chrX 128720994 128721490 -33878440 - MER34 LTR ERV1 0 542 27 8256 204 43 16 chrX 128721497 128723434 -33876496 + L1MC3 LINE L1 5268 7255 -530 2438 131 0 15 chrX 128774287 128774683 -33825247 + L1PA16 LINE L1 5777 6166 0 33 56 0 0 chrX 128774851 128774905 -33825025 + AT_rich Low_complexity Low_complexity 1 54 0 180 356 169 31 chrX 128775790 128775950 -33823980 + MER5A DNA MER1_type 3 184 -5 184 283 61 81 chrX 128776093 128776192 -33823738 + L2 LINE L2 3208 3304 -9 708 183 0 8 chrX 128776303 128776429 -33823501 + FLAM_C SINE Alu 1 125 -18 940 293 38 43 chrX 128777009 128777822 -33822108 - L1ME3A LINE L1 -8 6162 3426 536 158 21 0 chrX 128777849 128777944 -33821986 - L1M2 LINE L1 -6751 98 2 225 0 0 0 chrX 128779824 128779849 -33820081 + (GA)n Simple_repeat Simple_repeat 2 26 0 1699 99 69 5 chrX 128780160 128780566 -33819364 + MER75 DNA T2_type 1 514 0 26 50 0 0 chrX 128781003 128781043 -33818887 + AT_rich Low_complexity Low_complexity 1 40 0 3354 195 19 29 chrX 128781043 128781869 -33818061 - L1MA9 LINE L1 -14 6298 5379 6693 142 36 5 chrX 128781905 128783042 -33816888 + Tigger3b DNA MER2_type 60 1231 0 836 272 14 4 chrX 128783048 128783116 -33816814 - L1MA9 LINE L1 -779 5367 5301 333 0 0 0 chrX 128783116 128783153 -33816777 + (TA)n Simple_repeat Simple_repeat 2 38 0 836 272 14 4 chrX 128783153 128783363 -33816567 - L1MA9 LINE L1 -845 5301 5086 2010 139 7 3 chrX 128784056 128784358 -33815572 - AluJb SINE Alu -9 303 1 14473 138 13 32 chrX 128784763 128787095 -33812835 + Tigger1 DNA MER2_type 1 2284 -134 1500 188 0 14 chrX 128787095 128787382 -33812548 - AluJo SINE Alu -21 291 9 14473 138 13 32 chrX 128787382 128787514 -33812416 + Tigger1 DNA MER2_type 2284 2417 -1 7473 36 0 4 chrX 128787897 128789550 -33810380 - L1PA5 LINE L1 -1 6153 4503 192 228 0 0 chrX 128791901 128791958 -33807972 + CT-rich Low_complexity Low_complexity 2 58 0 409 250 0 11 chrX 128792256 128792344 -33807586 - MIR SINE MIR -21 241 155 1112 155 78 26 chrX 128792551 128792822 -33807108 - L1MA9 LINE L1 0 6312 6028 361 294 126 0 chrX 128792822 128792941 -33806989 - MIR SINE MIR -128 134 1 1651 193 10 56 chrX 128793319 128793728 -33806202 - MLT1B LTR MaLR 0 390 1 207 288 0 62 chrX 128793809 128793889 -33806041 - L2 LINE L2 -9 3263 3189 236 344 111 77 chrX 128796304 128797437 -33802493 + L2 LINE L2 1565 2736 -578 318 140 65 19 chrX 128797515 128797622 -33802308 + (TA)n Simple_repeat Simple_repeat 2 113 0 289 317 0 0 chrX 128797622 128797704 -33802226 + MER21B LTR ERV1 15 96 -767 1977 261 50 33 chrX 128797743 128798387 -33801543 + MER21B LTR ERV1 98 752 -111 414 157 9 102 chrX 128798519 128798627 -33801303 + MLT1B-int LTR MaLR 1637 1734 -1 1715 198 18 42 chrX 128798628 128799028 -33800902 + MLT1B LTR MaLR 1 390 0 3283 247 35 40 chrX 128799030 128799983 -33799947 + MER21B-int LTR ERV1 3746 4693 -2065 1986 121 37 79 chrX 128800072 128800452 -33799478 + THE1B LTR MaLR 1 364 0 10634 107 46 2 chrX 128800452 128801965 -33797965 + THE1B-int LTR MaLR 1 1580 0 1984 146 36 30 chrX 128801965 128802327 -33797603 + THE1B LTR MaLR 1 364 0 629 135 15 75 chrX 128802380 128802470 -33797460 + MER21B-int LTR ERV1 3575 3656 -535 1780 176 24 18 chrX 128802470 128802805 -33797125 - MER1B DNA MER1_type 0 337 1 629 135 15 75 chrX 128802805 128802847 -33797083 + MER21B-int LTR ERV1 3656 3699 -492 3192 195 30 3 chrX 128802853 128803447 -33796483 + LTR35 LTR ERV1 1 610 -8 2011 196 21 23 chrX 128803476 128803909 -33796021 + MER21B-int LTR ERV1 3715 4146 -45 2021 239 58 69 chrX 128803997 128804704 -33795226 + MER21B LTR ERV1 13 711 -152 235 311 39 29 chrX 128804705 128804808 -33795122 + MER21B LTR ERV1 651 754 -109 1480 192 43 35 chrX 128804838 128805207 -33794723 + MLT1A2 LTR MaLR 1 372 -2 253 377 63 0 chrX 128805659 128805818 -33794112 - L2 LINE L2 -2170 1144 976 351 386 70 26 chrX 128805881 128806420 -33793510 - L2 LINE L2 -2542 772 210 750 179 51 6 chrX 128806615 128806771 -33793159 - L1PA16 LINE L1 -9 6157 5995 7447 219 52 24 chrX 128806775 128809310 -33790620 + L1MB1 LINE L1 3185 5792 -376 805 244 122 20 chrX 128809310 128809669 -33790261 + MSTC LTR MaLR 1 428 0 1816 183 21 3 chrX 128809671 128810043 -33789887 + L1MB1 LINE L1 5790 6168 0 264 293 106 16 chrX 128810398 128810521 -33789409 + L2 LINE L2 2254 2387 -927 1071 272 30 22 chrX 128810684 128811089 -33788841 + L1MC3 LINE L1 4705 5112 -1034 2036 62 0 0 chrX 128811120 128811363 -33788567 + AluY SINE Alu 1 243 -68 5808 159 4 20 chrX 128811363 128812879 -33787051 + L1PB2 LINE L1 4653 6148 -3 * 6300 208 104 64 chrX 128812876 128814802 -33785128 + L1MC3 LINE L1 5373 7375 -410 312 206 54 11 chrX 128814802 128814894 -33785036 - MLT1D LTR MaLR -2 503 408 835 198 50 45 chrX 128814895 128815117 -33784813 - MLT1D LTR MaLR -275 230 8 1594 205 26 33 chrX 128815117 128815541 -33784389 + L1MC3 LINE L1 7363 7783 -2 34 65 0 0 chrX 128815684 128815746 -33784184 + AT_rich Low_complexity Low_complexity 1 62 0 322 255 32 0 chrX 128815777 128815871 -33784059 - L1ME LINE L1 -393 5728 5632 2507 150 22 22 chrX 128816447 128816893 -33783037 - Tigger2 DNA MER2_type 0 2718 2273 512 116 0 0 chrX 128816883 128816952 -33782978 - Tigger2 DNA MER2_type -2649 69 1 * 31 76 0 0 chrX 128816973 128817039 -33782891 + AT_rich Low_complexity Low_complexity 1 66 0 2099 118 0 16 chrX 128817428 128817733 -33782197 + AluSx SINE Alu 1 300 -12 2142 140 43 0 chrX 128817803 128818152 -33781778 - THE1B LTR MaLR 0 364 1 10420 113 39 4 chrX 128818152 128819678 -33780252 - THE1B-int LTR MaLR -1 1579 1 2069 157 25 3 chrX 128819678 128820034 -33779896 - THE1B LTR MaLR 0 364 1 1232 113 9 9 chrX 128820748 128820960 -33778970 + L1MA1 LINE L1 5961 6172 -130 269 53 0 0 chrX 128820958 128820996 -33778934 + L1MA3 LINE L1 6268 6305 0 * 21 57 0 0 chrX 128821532 128821567 -33778363 + AT_rich Low_complexity Low_complexity 1 35 0 195 301 21 21 chrX 128821786 128821879 -33778051 + MIR SINE MIR 50 142 -66 979 325 100 20 chrX 128821955 128822630 -33777300 + L2 LINE L2 2580 3313 0 21 57 0 0 chrX 128822691 128822726 -33777204 + AT_rich Low_complexity Low_complexity 1 35 0 29 70 0 0 chrX 128823203 128823260 -33776670 + AT_rich Low_complexity Low_complexity 1 57 0 329 259 177 49 chrX 128823345 128823588 -33776342 - L1M4 LINE L1 -3311 2835 2562 846 235 5 0 chrX 128823671 128823858 -33776072 - MER5A DNA MER1_type -1 188 1 388 333 60 12 chrX 128823868 128824036 -33775894 + MER5B DNA MER1_type 2 177 -1 658 230 51 72 chrX 128824325 128824560 -33775370 - MIR SINE MIR 0 262 33 669 278 158 25 chrX 128824977 128825294 -33774636 - MLT1B LTR MaLR -11 379 21 225 0 0 0 chrX 128825325 128825350 -33774580 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2105 125 0 0 chrX 128825352 128825640 -33774290 - AluSx SINE Alu -24 288 1 24 0 0 0 chrX 128826206 128826230 -33773700 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrX 128826309 128826332 -33773598 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 859 166 0 7 chrX 128826508 128826653 -33773277 + MLT1A1 LTR MaLR 1 144 -221 630 174 16 16 chrX 128826648 128826769 -33773161 + MLT1A1 LTR MaLR 245 365 0 * 3434 249 156 88 chrX 128826771 128828394 -33771536 + MLT1A1-int LTR MaLR 2 1735 0 623 155 0 0 chrX 128828394 128828497 -33771433 + MLT1A1 LTR MaLR 1 103 -262 254 277 172 23 chrX 128830022 128830278 -33769652 - L1MC/D LINE L1 -2231 5577 5284 201 196 20 0 chrX 128830432 128830483 -33769447 + (TTTAA)n Simple_repeat Simple_repeat 2 53 0 6297 104 9 47 chrX 128830487 128831557 -33768373 - L1MA2 LINE L1 -16 6288 5259 3736 189 14 9 chrX 128831552 128832365 -33767565 - L1MA2 LINE L1 -1109 5037 4221 * 802 174 50 6 chrX 129032365 129032526 -33567404 - L1M1 LINE L1 -7362 203 36 1701 179 9 17 chrX 129032610 129032956 -33566974 - MER7A DNA MER2_type -3 343 3 381 116 0 0 chrX 129033039 129033108 -33566822 + (TA)n Simple_repeat Simple_repeat 2 70 0 579 67 0 44 chrX 129033489 129033579 -33566351 + MLT2A2 LTR ERVL 368 453 0 3978 251 11 12 chrX 129033584 129034533 -33565397 + L1 LINE L1 591 1538 -6027 617 206 0 0 chrX 129034633 129034774 -33565156 + L1MA7 LINE L1 6147 6287 -4 24 32 0 0 chrX 129034852 129034883 -33565047 + AT_rich Low_complexity Low_complexity 1 31 0 1326 254 53 5 chrX 129036162 129036536 -33563394 - MSTD LTR MaLR -4 392 1 21 36 0 0 chrX 129036722 129036750 -33563180 + AT_rich Low_complexity Low_complexity 1 28 0 479 243 0 21 chrX 129036838 129036978 -33562952 - L1MA9 LINE L1 -8 6304 6168 2648 277 43 17 chrX 129038247 129039413 -33560517 - L1M4 LINE L1 -2291 3855 2660 252 86 0 0 chrX 129039594 129039629 -33560301 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 5232 244 43 10 chrX 129039646 129041187 -33558743 + L1 LINE L1 5009 6601 -964 359 253 103 119 chrX 129042055 129042367 -33557563 + MLT1A1 LTR MaLR 17 323 -42 813 229 24 61 chrX 129043329 129043489 -33556441 + L1M4 LINE L1 3591 3734 -2412 1360 227 24 86 chrX 129043489 129043945 -33555985 - MER34 LTR ERV1 -2 540 125 1782 161 6 3 chrX 129043945 129044256 -33555674 + AluSx SINE Alu 1 312 0 1360 227 24 86 chrX 129044256 129044372 -33555558 - MER34 LTR ERV1 -417 125 3 813 229 24 61 chrX 129044372 129044539 -33555391 + L1M4 LINE L1 3734 3906 -2240 9038 207 46 14 chrX 129044653 129045744 -33554186 - L1PBa LINE L1 -1871 4991 3936 183 80 0 0 chrX 129045744 129045769 -33554161 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9038 207 46 14 chrX 129045769 129048225 -33551705 - L1PBa LINE L1 -2926 3936 1298 300 250 0 0 chrX 129048226 129048286 -33551644 - L1PBa LINE L1 -5711 1152 1093 4220 229 53 2 chrX 129048288 129049279 -33550651 - L1PBa LINE L1 -5816 1047 6 10857 186 14 7 chrX 129049492 129052116 -33547814 - L1M1 LINE L1 -692 7029 4387 3538 216 21 33 chrX 129052115 129052907 -33547023 - L1M1 LINE L1 -6761 804 22 * 1749 179 12 65 chrX 129053073 129053503 -33546427 - L1MA7 LINE L1 -261 6030 5624 1328 173 30 0 chrX 129053503 129053774 -33546156 + L1MA7 LINE L1 6009 6287 -4 2725 160 14 23 chrX 129054846 129055136 -33544794 + L1MA6 LINE L1 5785 6069 -231 1797 126 63 77 chrX 129055136 129055500 -33544430 - THE1B LTR MaLR -2 362 4 2725 160 14 23 chrX 129055500 129055727 -33544203 + L1MA6 LINE L1 6069 6297 -3 282 51 0 26 chrX 129057240 129057279 -33542651 - MLT2A2 LTR ERVL 0 453 416 261 0 0 0 chrX 129057279 129057308 -33542622 + (TG)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chrX 129057307 129057330 -33542600 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 930 98 0 8 chrX 129057330 129057463 -33542467 + MLT2A1 LTR ERVL 273 404 -40 381 167 38 8 chrX 129057463 129057595 -33542335 + (TA)n Simple_repeat Simple_repeat 2 137 0 280 274 42 0 chrX 129057878 129057973 -33541957 + L1M4 LINE L1 3693 3791 -2355 341 315 44 30 chrX 129057981 129058276 -33541654 + L1M4 LINE L1 3846 4144 -2002 263 305 109 50 chrX 129058369 129058690 -33541240 + LTR16A1 LTR ERVL 118 457 0 566 259 41 7 chrX 129058772 129058919 -33541011 - HAL1 LINE L1 -1796 711 560 21 0 0 0 chrX 129059005 129059026 -33540904 + AT_rich Low_complexity Low_complexity 1 21 0 377 317 14 41 chrX 129059085 129059230 -33540700 + MIR3 SINE MIR 18 158 -50 233 224 104 30 chrX 129060049 129060116 -33539814 + MLT1K LTR MaLR 510 581 -7 370 75 30 0 chrX 129060320 129060387 -33539543 + (TA)n Simple_repeat Simple_repeat 2 70 0 309 318 16 16 chrX 129060396 129060469 -33539461 + L1ME LINE L1 5621 5696 -425 1829 171 6 14 chrX 129060469 129060815 -33539115 + MER7A DNA MER2_type 3 343 -3 309 318 16 16 chrX 129060815 129060867 -33539063 + L1ME LINE L1 5695 5746 -375 15101 197 25 11 chrX 129060899 129062265 -33537665 + L1MA3 LINE L1 36 1382 -6183 2306 108 0 0 chrX 129062265 129062561 -33537369 + AluSg SINE Alu 1 296 -14 15101 197 25 11 chrX 129062561 129064136 -33535794 + L1MA3 LINE L1 1382 3017 -4548 5208 157 19 20 chrX 129064141 129065663 -33534267 + L1PB2 LINE L1 4614 6123 -28 23 0 0 0 chrX 129065684 129065707 -33534223 + AT_rich Low_complexity Low_complexity 1 23 0 2933 199 23 30 chrX 129065707 129067024 -33532906 + L1MA3 LINE L1 3006 4314 -3251 1453 197 29 3 chrX 129067030 129067345 -33532585 + L1MA3 LINE L1 5508 5830 -1735 * 2911 113 7 0 chrX 129067333 129067765 -33532165 - L1MA2 LINE L1 -467 5838 5404 1881 157 9 3 chrX 129067764 129068109 -33531821 + L1MA2 LINE L1 5859 6205 -99 * 186 43 0 0 chrX 129068111 129068134 -33531796 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 2057 27 0 0 chrX 129068194 129068450 -33531480 - L1P LINE L1 -810 5336 5081 336 167 0 83 chrX 129068730 129068814 -33531116 + L1MA5A LINE L1 6219 6295 -2 24 85 0 0 chrX 129068869 129068928 -33531002 + AT_rich Low_complexity Low_complexity 1 59 0 6334 159 18 4 chrX 129068939 129070819 -33529111 + L1MA3 LINE L1 5821 7724 0 24 0 0 0 chrX 129070823 129070847 -33529083 + AT_rich Low_complexity Low_complexity 1 24 0 1821 162 7 13 chrX 129071521 129071829 -33528101 + AluSx SINE Alu 2 307 -5 569 335 40 28 chrX 129072268 129072519 -33527411 - MIR SINE MIR -7 255 2 22 0 0 0 chrX 129072902 129072924 -33527006 + AT_rich Low_complexity Low_complexity 1 22 0 258 32 0 0 chrX 129073589 129073620 -33526310 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1678 44 0 10 chrX 129073622 129073825 -33526105 - AluY SINE Alu -31 280 80 265 136 24 0 chrX 129073847 129073897 -33526033 - MLT2C1 LTR ERVL 0 397 356 2053 177 32 22 chrX 129073951 129074352 -33525578 - MLT2C2 LTR ERVL -55 409 5 21 0 0 0 chrX 129074790 129074811 -33525119 + AT_rich Low_complexity Low_complexity 1 21 0 2123 81 7 49 chrX 129076158 129076466 -33523464 - AluY SINE Alu -16 295 1 23 0 0 0 chrX 129076538 129076561 -33523369 + AT_rich Low_complexity Low_complexity 1 23 0 1581 259 45 29 chrX 129077396 129078022 -33521908 + L1M4 LINE L1 4504 5139 -1007 21 0 0 0 chrX 129078022 129078043 -33521887 + AT_rich Low_complexity Low_complexity 1 21 0 649 229 17 51 chrX 129078048 129078223 -33521707 + L1MC1 LINE L1 265 433 -6109 343 85 0 0 chrX 129078260 129078307 -33521623 - MLT2B1 LTR ERVL 0 520 474 2276 206 2 2 chrX 129078341 129078758 -33521172 + MER47B DNA MER2_type 1 417 -1 1976 195 25 79 chrX 129078798 129079288 -33520642 - MLT2B1 LTR ERVL -37 446 5 596 321 5 5 chrX 129079290 129079480 -33520450 + L1MC1 LINE L1 472 661 -5881 360 319 0 0 chrX 129079507 129079601 -33520329 + L1MC1 LINE L1 650 743 -5799 25454 77 8 4 chrX 129079679 129085798 -33514132 + L1PA6 LINE L1 9 6143 -11 21 0 0 0 chrX 129085798 129085819 -33514111 + AT_rich Low_complexity Low_complexity 1 21 0 2097 253 39 22 chrX 129085857 129086750 -33513180 + L1MC1 LINE L1 754 2159 -4487 7910 229 44 40 chrX 129086766 129087027 -33512903 + L1MC1 LINE L1 2732 2990 -3841 2266 73 0 7 chrX 129087027 129087316 -33512614 + AluSq SINE Alu 1 287 -26 7910 229 44 40 chrX 129087316 129090603 -33509327 + L1MC1 LINE L1 2990 6302 -529 1859 140 0 17 chrX 129090603 129090896 -33509034 - AluSx SINE Alu -24 288 1 7910 229 44 40 chrX 129090896 129091429 -33508501 + L1MC1 LINE L1 6302 6831 0 24 0 0 0 chrX 129091443 129091467 -33508463 + AT_rich Low_complexity Low_complexity 1 24 0 3595 189 35 33 chrX 129091467 129092316 -33507614 + L1MB7 LINE L1 5317 6167 -17 6607 184 52 67 chrX 129092739 129093751 -33506179 - L1 LINE L1 -1525 4621 3595 1888 168 7 0 chrX 129093751 129094061 -33505869 - AluSx SINE Alu 0 312 1 6607 184 52 67 chrX 129094061 129094174 -33505756 - L1 LINE L1 -2551 3595 3482 207 0 0 0 chrX 129094174 129094197 -33505733 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6607 184 52 67 chrX 129094197 129094932 -33504998 - L1 LINE L1 -2664 3482 2788 203 341 106 8 chrX 129095446 129095569 -33504361 + L3 LINE CR1 646 780 -797 373 375 21 10 chrX 129095677 129095869 -33504061 + L3 LINE CR1 1364 1557 -20 351 0 0 0 chrX 129096400 129096439 -33503491 + (CA)n Simple_repeat Simple_repeat 2 40 0 504 342 111 4 chrX 129098351 129098576 -33501354 + MIR SINE MIR 2 250 -12 2566 41 3 0 chrX 129098847 129099163 -33500767 + L1PA7 LINE L1 5838 6154 0 7595 187 35 11 chrX 129099580 129099955 -33499975 - L1PB4 LINE L1 -23 6133 5769 1768 148 80 17 chrX 129099955 129100307 -33499623 + THE1C LTR MaLR 2 375 0 7595 187 35 11 chrX 129100307 129102425 -33497505 - L1PB4 LINE L1 -387 5769 3576 336 143 0 0 chrX 129102430 129102486 -33497444 + (TCTCCC)n Simple_repeat Simple_repeat 6 61 0 1614 163 0 42 chrX 129102494 129102782 -33497148 - AluJo SINE Alu -36 276 1 200 222 0 0 chrX 129102964 129103009 -33496921 + A-rich Low_complexity Low_complexity 1 45 0 219 154 0 0 chrX 129103108 129103147 -33496783 + L2 LINE L2 3269 3307 -6 378 318 104 29 chrX 129103632 129103805 -33496125 - MIR3 SINE MIR -7 201 16 754 276 35 13 chrX 129103951 129104183 -33495747 + Charlie8 DNA MER1_type 28 264 -2153 2090 13 0 0 chrX 129104391 129104649 -33495281 + L1PA4 LINE L1 5901 6158 0 25 0 0 0 chrX 129104700 129104725 -33495205 + AT_rich Low_complexity Low_complexity 1 25 0 330 67 0 0 chrX 129105833 129105878 -33494052 + (TG)n Simple_repeat Simple_repeat 1 45 0 414 281 43 78 chrX 129106817 129107048 -33492882 - MIR SINE MIR -8 254 32 252 216 40 27 chrX 129107141 129107215 -33492715 + MER116 DNA Mariner 1 75 -5 6647 147 13 18 chrX 129107766 129109545 -33490385 - L1MA2 LINE L1 0 6304 4529 517 344 27 5 chrX 129109581 129109767 -33490163 - MIR SINE MIR -71 191 2 603 214 13 122 chrX 129109812 129110041 -33489889 - MER3 DNA MER1_type 0 209 6 409 293 47 0 chrX 129110203 129110309 -33489621 + L2 LINE L2 3200 3310 -3 412 381 65 20 chrX 129110528 129110930 -33489000 + L2 LINE L2 2322 2741 -573 3680 130 47 0 chrX 129111103 129111678 -33488252 - LTR43 LTR ERV1 0 602 1 222 385 37 0 chrX 129112034 129112143 -33487787 - L2 LINE L2 -540 2774 2662 2224 110 3 0 chrX 129112164 129112473 -33487457 + AluSg SINE Alu 1 310 0 384 77 0 0 chrX 129113465 129113517 -33486413 + (CA)n Simple_repeat Simple_repeat 1 52 0 334 159 32 16 chrX 129113517 129113591 -33486339 - MER34C LTR ERV1 -467 101 1 311 284 123 19 chrX 129113601 129113756 -33486174 + L1ME LINE L1 3324 3494 -2652 201 213 0 0 chrX 129113763 129113810 -33486120 + (CA)n Simple_repeat Simple_repeat 1 47 0 5534 228 47 21 chrX 129113868 129116223 -33483707 - L1MB7 LINE L1 -14 6170 3741 1588 224 23 82 chrX 129116223 129116339 -33483591 + MER34 LTR ERV1 3 124 -418 1985 129 6 3 chrX 129116339 129116650 -33483280 - AluSx SINE Alu 0 312 1 1588 224 23 82 chrX 129116650 129117105 -33482825 + MER34 LTR ERV1 124 540 -2 5534 228 47 21 chrX 129117105 129117279 -33482651 - L1MB7 LINE L1 -2443 3741 3573 263 314 92 38 chrX 129117800 129118061 -33481869 + L1ME LINE L1 3608 3882 -2264 385 324 118 51 chrX 129118493 129119119 -33480811 + L1ME LINE L1 4379 5046 -1100 353 272 96 34 chrX 129119251 129119637 -33480293 + L1ME LINE L1 5163 5576 -594 308 321 64 48 chrX 129120238 129120487 -33479443 - L2 LINE L2 -844 2470 2218 187 395 12 37 chrX 129121029 129121191 -33478739 + L2 LINE L2 2541 2698 -616 276 350 21 0 chrX 129121193 129121290 -33478640 + L2 LINE L2 2955 3053 -219 1589 192 83 36 chrX 129121334 129121478 -33478452 - L1MD1 LINE L1 -14 6228 6092 2456 114 11 0 chrX 129121478 129121838 -33478092 - THE1B LTR MaLR 0 364 1 1589 192 83 36 chrX 129121838 129121907 -33478023 - L1MD1 LINE L1 -150 6092 5656 385 245 75 68 chrX 129121907 129122172 -33477758 - L1MB5 LINE L1 -175 5999 5733 183 342 117 0 chrX 129122176 129122287 -33477643 + L2 LINE L2 3190 3313 0 1088 289 101 41 chrX 129122389 129122856 -33477074 - L2 LINE L2 0 3313 2819 443 197 0 0 chrX 129122865 129122936 -33476994 + MER33 DNA MER1_type 1 71 -253 2222 238 19 76 chrX 129122944 129123697 -33476233 + L1PA16 LINE L1 5319 6028 -138 * 4035 157 8 14 chrX 129123248 129123976 -33475954 + L1MA2 LINE L1 5581 6304 0 882 184 68 16 chrX 129123982 129124161 -33475769 + MER33 DNA MER1_type 53 250 -2335 1674 181 16 13 chrX 129124161 129124465 -33475465 - AluJb SINE Alu -7 305 1 882 184 68 16 chrX 129124465 129124535 -33475395 + MER33 DNA MER1_type 250 315 -9 2095 311 41 18 chrX 129124545 129125269 -33474661 - L2 LINE L2 -495 2819 2079 3760 108 2 7 chrX 129125405 129125972 -33473958 - L1PA13 LINE L1 -5 6809 6246 10793 181 17 35 chrX 129125972 129128309 -33471621 - L1PA13 LINE L1 -836 5961 3668 1871 196 37 34 chrX 129128309 129128641 -33471289 + MLT2A2 LTR ERVL 1 335 -219 2185 142 5 32 chrX 129128641 129129015 -33470915 - THE1B LTR MaLR 0 364 1 1871 196 37 34 chrX 129129015 129129236 -33470694 + MLT2A2 LTR ERVL 335 554 0 7283 202 18 16 chrX 129129236 129131419 -33468511 - L1PA13 LINE L1 -3125 3672 1476 4314 223 54 2 chrX 129131436 129132308 -33467622 - L1PA13 LINE L1 -5866 921 5 295 302 1 25 chrX 129132576 129132662 -33467268 + MIR3 SINE MIR 1 84 -133 1539 203 46 28 chrX 129133068 129133457 -33466473 + MSTD LTR MaLR 1 396 0 295 336 88 0 chrX 129133736 129133873 -33466057 + MIR SINE MIR 32 180 -82 598 208 0 76 chrX 129134119 129134263 -33465667 + FLAM_A SINE Alu 1 133 0 276 264 7 115 chrX 129134791 129134939 -33464991 - L2 LINE L2 -224 3048 2917 1882 124 33 33 chrX 129135075 129135381 -33464549 + AluSx SINE Alu 4 309 -3 26 0 0 0 chrX 129135397 129135423 -33464507 + AT_rich Low_complexity Low_complexity 1 26 0 663 241 88 102 chrX 129136175 129136527 -33463403 + MLT1A1 LTR MaLR 19 365 0 225 333 0 0 chrX 129136540 129136603 -33463327 - MIR3 SINE MIR -35 173 111 510 281 111 6 chrX 129136834 129137005 -33462925 - MER5A DNA MER1_type 0 189 1 312 254 164 0 chrX 129137039 129137161 -33462769 + MIR SINE MIR 70 211 -51 365 149 0 14 chrX 129137241 129137315 -33462615 - L1MA2 LINE L1 0 6304 6232 9483 215 49 41 chrX 129137315 129141496 -33458434 - L1 LINE L1 -2342 5223 654 2028 156 32 52 chrX 129141541 129142102 -33457828 - MLT2A2 LTR ERVL 0 554 1 2960 195 28 5 chrX 129142104 129142667 -33457263 - L1 LINE L1 -6977 588 13 1703 198 30 0 chrX 129142726 129143060 -33456870 + MER2 DNA MER2_type 1 344 0 330 26 0 0 chrX 129143567 129143606 -33456324 + (TG)n Simple_repeat Simple_repeat 2 40 0 182 406 0 21 chrX 129144381 129144477 -33455453 + MER5A DNA MER1_type 43 136 -53 4121 84 68 43 chrX 129144640 129145284 -33454646 - PABL_A LTR ERV1 0 660 1 32080 76 58 48 chrX 129145284 129146678 -33453252 - PABL_A-int LTR ERV1 0 5015 3636 2302 71 0 0 chrX 129146678 129146984 -33452946 - AluY SINE Alu 0 306 1 32080 76 58 48 chrX 129146984 129150554 -33449376 - PABL_A-int LTR ERV1 -1379 3636 1 4195 75 82 24 chrX 129150554 129151178 -33448752 - PABL_A LTR ERV1 0 660 1 242 266 124 24 chrX 129151763 129151932 -33447998 + L1M4 LINE L1 4907 5092 -1054 180 0 0 0 chrX 129151963 129151983 -33447947 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 215 371 10 0 chrX 129153978 129154075 -33445855 + MER5B DNA MER1_type 70 167 -11 29 0 0 0 chrX 129154136 129154165 -33445765 + AT_rich Low_complexity Low_complexity 1 29 0 441 324 28 28 chrX 129154311 129154490 -33445440 + MIR SINE MIR 70 248 -14 907 113 25 6 chrX 129154718 129154878 -33445052 - L1M2 LINE L1 -855 5436 5274 645 141 16 0 chrX 129154878 129154999 -33444931 + L1MA8 LINE L1 6157 6279 -12 23 33 0 0 chrX 129155000 129155030 -33444900 + AT_rich Low_complexity Low_complexity 1 30 0 2292 72 0 33 chrX 129155033 129155339 -33444591 + AluY SINE Alu 3 298 -13 559 159 43 61 chrX 129156447 129156611 -33443319 + L1MA7 LINE L1 5927 6030 -159 * 5102 149 10 16 chrX 129156609 129156996 -33442934 - L1PB4 LINE L1 -1 6155 5767 429 20 0 0 chrX 129156996 129157046 -33442884 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 5102 149 10 16 chrX 129157046 129157598 -33442332 - L1PB4 LINE L1 -389 5767 5222 722 205 16 0 chrX 129157617 129157802 -33442128 + L1MA7 LINE L1 6102 6289 -2 1451 223 0 14 chrX 129160577 129160869 -33439061 + AluJo SINE Alu 1 288 -24 2210 131 88 8 chrX 129161625 129162021 -33437909 + MSTA LTR MaLR 1 428 0 3466 173 33 5 chrX 129162021 129162656 -33437274 + MSTA-int LTR MaLR 1 653 -998 2798 255 63 62 chrX 129162658 129162948 -33436982 - L1 LINE L1 -3779 2865 2577 5484 26 2 0 chrX 129162948 129163590 -33436340 - L1PA4 LINE L1 -8 6147 5505 2798 255 63 62 chrX 129163590 129163765 -33436165 - L1 LINE L1 -4067 2577 2404 931 233 15 0 chrX 129163765 129163971 -33435959 - MER6B DNA MER2_type 0 210 2 2798 255 63 62 chrX 129163971 129165560 -33434370 - L1 LINE L1 -4240 2404 829 1175 105 21 11 chrX 129165831 129166022 -33433908 - L1MA1 LINE L1 0 6302 6110 6217 93 8 14 chrX 129166022 129167517 -33432413 - L1PA11 LINE L1 -5 6169 4666 19068 113 61 39 chrX 129167517 129170783 -33429147 - MER61-int LTR ERV1 -1870 3347 9 833 138 16 2 chrX 129170788 129170922 -33429008 + MSTB1 LTR MaLR 274 362 -3 22 70 0 0 chrX 129171099 129171142 -33428788 + AT_rich Low_complexity Low_complexity 1 43 0 198 0 0 0 chrX 129171877 129171899 -33428031 + (A)n Simple_repeat Simple_repeat 1 22 0 5644 62 16 21 chrX 129173059 129173292 -33426638 - MER4E LTR ERV1 0 766 533 2365 80 0 3 chrX 129173292 129173593 -33426337 + AluY SINE Alu 1 300 -11 5644 62 16 21 chrX 129173593 129173681 -33426249 - MER4E LTR ERV1 -233 533 446 3738 99 0 4 chrX 129173681 129174194 -33425736 - MER9 LTR ERVK 0 511 1 5644 62 16 21 chrX 129174194 129174641 -33425289 - MER4E LTR ERV1 -320 446 1 706 288 30 15 chrX 129175119 129175317 -33424613 - MIR SINE MIR -58 204 4 1703 66 0 9 chrX 129175700 129175928 -33424002 - L1PA8 LINE L1 -15 6157 5932 201 354 180 31 chrX 129176039 129176405 -33423525 - L2 LINE L2 -881 2433 1986 2075 131 0 0 chrX 129176405 129176695 -33423235 + AluSg SINE Alu 6 295 -15 201 354 180 31 chrX 129176695 129176777 -33423153 - L2 LINE L2 -1328 1986 1918 1884 125 0 7 chrX 129177021 129177293 -33422637 + AluSc SINE Alu 1 270 -39 1372 211 77 4 chrX 129177612 129177758 -33422172 - AluJb SINE Alu -30 282 148 272 49 49 0 chrX 129177758 129177799 -33422131 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1372 211 77 4 chrX 129177799 129177913 -33422017 - AluJb SINE Alu -164 148 3 22 0 0 0 chrX 129178274 129178296 -33421634 + AT_rich Low_complexity Low_complexity 1 22 0 2683 39 0 0 chrX 129179544 129179855 -33420075 + AluY SINE Alu 1 311 0 21 0 0 0 chrX 129180017 129180038 -33419892 + AT_rich Low_complexity Low_complexity 1 21 0 309 89 0 0 chrX 129180796 129180841 -33419089 + (TG)n Simple_repeat Simple_repeat 2 46 0 1192 7 0 0 chrX 129181181 129181317 -33418613 - L1PA2 LINE L1 -1 6154 6019 24 0 0 0 chrX 129182190 129182214 -33417716 + AT_rich Low_complexity Low_complexity 1 24 0 308 386 32 32 chrX 129183165 129183323 -33416607 - L2 LINE L2 -9 3263 3106 22 88 0 0 chrX 129183409 129183466 -33416464 + AT_rich Low_complexity Low_complexity 1 57 0 22375 61 1 0 chrX 129183744 129187442 -33412488 - L1PA5 LINE L1 0 6154 2453 15553 111 8 29 chrX 129187444 129189852 -33410078 - L1PA5 LINE L1 -3789 2357 1 602 166 107 30 chrX 129189947 129190116 -33409814 + MER53 DNA DNA 1 182 -7 450 0 0 0 chrX 129190627 129190677 -33409253 + (TG)n Simple_repeat Simple_repeat 2 51 0 2805 83 34 3 chrX 129191122 129191506 -33408424 + MLT2A1 LTR ERVL 1 396 -48 860 7 0 93 chrX 129191508 129191799 -33408131 + (TA)n Simple_repeat Simple_repeat 1 263 0 682 93 0 0 chrX 129191799 129191896 -33408034 + HERVL LTR ERVL 1004 1100 -4554 24 32 0 0 chrX 129191898 129191929 -33408001 + AT_rich Low_complexity Low_complexity 1 31 0 327 65 0 22 chrX 129191946 129191992 -33407938 + MLT2A1 LTR ERVL 409 453 0 28993 78 3 2 chrX 129191992 129195709 -33404221 + HERVL-A1-A1 LTR ERVL 1 3720 -1934 3393 70 0 0 chrX 129195710 129196136 -33403794 + HERVL-A1-A1 LTR ERVL 3826 4251 -1403 * 9685 81 9 0 chrX 129196130 129197395 -33402535 + HERVL-A1-A1 LTR ERVL 4379 5654 0 890 132 28 0 chrX 129197397 129197541 -33402389 + MLT2A1 LTR ERVL 3 150 -294 357 375 21 10 chrX 129198040 129198232 -33401698 - L3 LINE CR1 -20 1557 1364 194 341 106 8 chrX 129198340 129198463 -33401467 - L3 LINE CR1 -797 780 646 6620 183 52 60 chrX 129198977 129199712 -33400218 + L1 LINE L1 2788 3527 -2619 207 0 0 0 chrX 129199712 129199735 -33400195 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6620 183 52 60 chrX 129199735 129199848 -33400082 + L1 LINE L1 3527 3639 -2507 1917 168 7 0 chrX 129199848 129200158 -33399772 + AluSx SINE Alu 1 312 0 6620 183 52 60 chrX 129200158 129201156 -33398774 + L1 LINE L1 3639 4621 -1525 3550 189 35 33 chrX 129201580 129202429 -33397501 - L1MB7 LINE L1 -17 6167 5317 24 0 0 0 chrX 129202429 129202453 -33397477 + AT_rich Low_complexity Low_complexity 1 24 0 7525 230 44 39 chrX 129202467 129203000 -33396930 - L1MC1 LINE L1 0 6831 6303 1890 140 0 17 chrX 129203000 129203293 -33396637 + AluSx SINE Alu 1 288 -24 7525 230 44 39 chrX 129203293 129206573 -33393357 - L1MC1 LINE L1 -528 6303 2990 2306 73 0 7 chrX 129206573 129206862 -33393068 - AluSq SINE Alu -26 287 1 7525 230 44 39 chrX 129206862 129207123 -33392807 - L1MC1 LINE L1 -3841 2990 2732 2058 254 39 22 chrX 129207139 129208032 -33391898 - L1MC1 LINE L1 -4487 2159 754 21 0 0 0 chrX 129208070 129208091 -33391839 + AT_rich Low_complexity Low_complexity 1 21 0 38463 82 9 6 chrX 129208091 129214210 -33385720 - L1PA6 LINE L1 -11 6143 9 360 319 0 0 chrX 129214288 129214382 -33385548 - L1MC1 LINE L1 -5799 743 650 596 321 5 5 chrX 129214409 129214599 -33385331 - L1MC1 LINE L1 -5881 661 472 1961 192 24 81 chrX 129214601 129215070 -33384860 + MLT2B1 LTR ERVL 5 446 -74 2252 209 2 2 chrX 129215131 129215548 -33384382 - MER47B DNA MER2_type -1 417 1 343 85 0 0 chrX 129215582 129215629 -33384301 + MLT2B1 LTR ERVL 469 515 0 649 229 17 51 chrX 129215666 129215841 -33384089 - L1MC1 LINE L1 -6109 433 265 21 0 0 0 chrX 129215846 129215867 -33384063 + AT_rich Low_complexity Low_complexity 1 21 0 1587 265 37 21 chrX 129215867 129216493 -33383437 - L1M4 LINE L1 -1007 5139 4504 23 0 0 0 chrX 129217328 129217351 -33382579 + AT_rich Low_complexity Low_complexity 1 23 0 2126 81 7 52 chrX 129217423 129217733 -33382197 + AluY SINE Alu 1 296 -15 21 0 0 0 chrX 129219080 129219101 -33380829 + AT_rich Low_complexity Low_complexity 1 21 0 2053 177 32 22 chrX 129219539 129219940 -33379990 + MLT2C2 LTR ERVL 5 409 -55 265 136 24 0 chrX 129219994 129220044 -33379886 + MLT2C1 LTR ERVL 356 397 0 1679 44 0 10 chrX 129220066 129220302 -33379628 + AluY SINE Alu 80 313 0 22 0 0 0 chrX 129220966 129220988 -33378942 + AT_rich Low_complexity Low_complexity 1 22 0 569 335 40 28 chrX 129221371 129221622 -33378308 + MIR SINE MIR 2 255 -7 1830 162 7 13 chrX 129222061 129222370 -33377560 - AluSx SINE Alu -4 308 2 24 0 0 0 chrX 129223044 129223068 -33376862 + AT_rich Low_complexity Low_complexity 1 24 0 6326 160 18 4 chrX 129223072 129224952 -33374978 - L1MA3 LINE L1 0 7724 5821 24 85 0 0 chrX 129224963 129225022 -33374908 + AT_rich Low_complexity Low_complexity 1 59 0 336 167 0 83 chrX 129225077 129225161 -33374769 - L1MA5A LINE L1 -2 6295 6219 2057 27 0 0 chrX 129225441 129225697 -33374233 + L1P LINE L1 5081 5336 -810 186 43 0 0 chrX 129225757 129225780 -33374150 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1881 157 9 3 chrX 129225782 129226127 -33373803 - L1MA2 LINE L1 -99 6205 5859 * 2911 113 7 0 chrX 129226126 129226558 -33373372 + L1MA2 LINE L1 5404 5838 -467 1453 197 29 3 chrX 129226546 129226861 -33373069 - L1MA3 LINE L1 -1735 5830 5508 * 2933 199 23 30 chrX 129226867 129228184 -33371746 - L1MA3 LINE L1 -3251 4314 3006 23 0 0 0 chrX 129228184 129228207 -33371723 + AT_rich Low_complexity Low_complexity 1 23 0 5208 155 19 20 chrX 129228228 129229750 -33370180 - L1PB2 LINE L1 -28 6123 4614 15101 197 25 11 chrX 129229755 129231330 -33368600 - L1MA3 LINE L1 -4548 3017 1382 2306 108 0 0 chrX 129231330 129231626 -33368304 - AluSg SINE Alu -14 296 1 15101 197 25 11 chrX 129231626 129232992 -33366938 - L1MA3 LINE L1 -6183 1382 36 309 318 16 16 chrX 129233024 129233076 -33366854 - L1ME LINE L1 -375 5746 5695 1835 171 6 14 chrX 129233076 129233422 -33366508 - MER7A DNA MER2_type -3 343 3 309 318 16 16 chrX 129233422 129233495 -33366435 - L1ME LINE L1 -425 5696 5621 370 75 30 0 chrX 129233504 129233571 -33366359 + (TA)n Simple_repeat Simple_repeat 2 70 0 238 224 104 30 chrX 129233775 129233842 -33366088 - MLT1K LTR MaLR -7 581 510 376 317 14 41 chrX 129234661 129234806 -33365124 - MIR3 SINE MIR -50 158 18 21 0 0 0 chrX 129234865 129234886 -33365044 + AT_rich Low_complexity Low_complexity 1 21 0 566 259 41 7 chrX 129234972 129235119 -33364811 + HAL1 LINE L1 560 711 -1796 268 308 109 50 chrX 129235201 129235522 -33364408 - LTR16A1 LTR ERVL 0 457 118 406 319 37 24 chrX 129235615 129235910 -33364020 - L1M4 LINE L1 -2002 4144 3846 292 274 42 0 chrX 129235918 129236013 -33363917 - L1M4 LINE L1 -2355 3791 3693 494 267 61 6 chrX 129236183 129236363 -33363567 + L1M3 LINE L1 3445 3634 -2512 28 0 0 0 chrX 129236410 129236438 -33363492 + AT_rich Low_complexity Low_complexity 1 28 0 786 287 86 25 chrX 129236438 129237618 -33362312 + L1M3 LINE L1 4199 5503 -677 251 281 11 45 chrX 129237858 129237947 -33361983 + L2 LINE L2 3164 3249 -64 639 240 7 76 chrX 129238018 129238312 -33361618 + MSTD LTR MaLR 1 263 -102 586 323 125 58 chrX 129238312 129238937 -33360993 + L2 LINE L2 2289 2955 -359 444 254 0 85 chrX 129239125 129239255 -33360675 + L2 LINE L2 3139 3257 -15 240 35 0 0 chrX 129239349 129239378 -33360552 + (CA)n Simple_repeat Simple_repeat 2 30 0 5449 167 14 33 chrX 129239378 129241031 -33358899 + L1PA16 LINE L1 4409 6021 -145 1966 173 60 36 chrX 129241031 129241447 -33358483 - MSTB LTR MaLR 0 426 1 5449 167 14 33 chrX 129241447 129241582 -33358348 + L1PA16 LINE L1 6021 6157 -9 28 48 0 0 chrX 129241820 129241862 -33358068 + AT_rich Low_complexity Low_complexity 1 42 0 369 75 0 0 chrX 129242471 129242524 -33357406 + (CA)n Simple_repeat Simple_repeat 1 53 0 1510 261 33 15 chrX 129243063 129243458 -33356472 - MLT1E2 LTR MaLR 0 626 225 4343 225 91 92 chrX 129243486 129243983 -33355947 - L1M4 LINE L1 -3846 2798 2302 330 26 0 0 chrX 129243983 129244022 -33355908 + (CA)n Simple_repeat Simple_repeat 2 40 0 4343 225 91 92 chrX 129244022 129246234 -33353696 - L1M4 LINE L1 -4342 2302 182 660 275 18 18 chrX 129246466 129246688 -33353242 - L1MEc LINE L1 -3721 2359 2138 463 303 38 52 chrX 129246718 129247137 -33352793 - L1MEc LINE L1 -4158 2103 1691 3023 164 29 2 chrX 129247249 129247762 -33352168 - L1M4 LINE L1 -5940 1625 1099 638 175 33 0 chrX 129247759 129247879 -33352051 - L1M4 LINE L1 -7432 133 10 * 260 297 36 76 chrX 129247891 129248167 -33351763 - L1MEc LINE L1 -5363 707 443 314 298 101 58 chrX 129248490 129248698 -33351232 - L1MEc LINE L1 -5599 471 255 226 268 12 12 chrX 129248798 129248880 -33351050 - L1MEc LINE L1 -5921 149 68 310 307 64 7 chrX 129249007 129249147 -33350783 + L1ME4a LINE L1 5762 5909 -212 21 57 0 0 chrX 129249190 129249225 -33350705 + AT_rich Low_complexity Low_complexity 1 35 0 180 317 17 0 chrX 129249522 129249582 -33350348 - L2 LINE L2 -230 3042 2982 333 0 0 0 chrX 129249857 129249894 -33350036 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 62 0 0 chrX 129250156 129250204 -33349726 + AT_rich Low_complexity Low_complexity 1 48 0 425 302 17 0 chrX 129250750 129250866 -33349064 - L2 LINE L2 -5 3267 3150 675 308 40 16 chrX 129251035 129251282 -33348648 - MIR SINE MIR 0 262 10 360 0 0 0 chrX 129251405 129251445 -33348485 + (TG)n Simple_repeat Simple_repeat 1 40 0 947 173 48 87 chrX 129251736 129251967 -33347963 - MLT1A2 LTR MaLR -152 222 1 1475 238 53 5 chrX 129254198 129254572 -33345358 - MSTD LTR MaLR -4 392 1 21 36 0 0 chrX 129254758 129254786 -33345144 + AT_rich Low_complexity Low_complexity 1 28 0 810 142 0 82 chrX 129254874 129255057 -33344873 - L1MA9 LINE L1 -8 6304 6137 1821 198 54 38 chrX 129255088 129255727 -33344203 - L1MA9 LINE L1 -747 5399 4844 3569 257 58 59 chrX 129257405 129259505 -33340425 + L1PA11 LINE L1 10 2176 -4285 33323 91 67 6 chrX 129259512 129265303 -33334627 + L1PA6 LINE L1 11 6154 0 19303 156 14 2 chrX 129265295 129269579 -33330351 + L1PA11 LINE L1 2158 6487 -2 * 290 233 35 0 chrX 129269844 129269930 -33330000 - MIR SINE MIR -27 235 147 1227 265 88 17 chrX 129269931 129270320 -33329610 + MLT1F1 LTR MaLR 1 405 -137 313 292 0 14 chrX 129270320 129270392 -33329538 - MER81 DNA DNA 0 114 44 381 308 9 0 chrX 129270405 129270512 -33329418 - MER81 DNA DNA -5 109 2 755 207 7 0 chrX 129270513 129270653 -33329277 + MLT1F1 LTR MaLR 399 539 -3 223 308 46 46 chrX 129271589 129271719 -33328211 - MER5B DNA MER1_type 0 178 49 369 246 64 36 chrX 129273098 129273208 -33326722 + L2 LINE L2 3199 3311 -2 * 468 248 0 66 chrX 129273182 129273303 -33326627 - L2 LINE L2 -10 3303 3191 485 269 64 0 chrX 129273392 129273533 -33326397 + L2 LINE L2 3162 3311 -2 1074 192 67 8 chrX 129273719 129273959 -33325971 + L1MD1 LINE L1 5936 6189 -53 42690 33 21 1 chrX 129273959 129279991 -33319939 - L1PA2 LINE L1 0 6155 1 309 137 0 0 chrX 129279992 129280043 -33319887 + L1MD1 LINE L1 6172 6222 -20 5335 175 21 22 chrX 129280110 129281974 -33317956 + L1PA16 LINE L1 4307 6160 -6 22 0 0 0 chrX 129281987 129282009 -33317921 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 129283144 129283175 -33316755 + AT_rich Low_complexity Low_complexity 1 31 0 479 294 117 30 chrX 129283319 129283516 -33316414 + MIR SINE MIR 49 262 0 221 283 0 0 chrX 129283516 129283569 -33316361 + (CCA)n Simple_repeat Simple_repeat 3 55 0 24 32 0 0 chrX 129283748 129283779 -33316151 + AT_rich Low_complexity Low_complexity 1 31 0 201 236 0 0 chrX 129284011 129284066 -33315864 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 22 0 0 0 chrX 129284610 129284632 -33315298 + AT_rich Low_complexity Low_complexity 1 22 0 16220 174 28 12 chrX 129285366 129288354 -33311576 + L1MA1 LINE L1 18 3054 -4511 13521 203 17 7 chrX 129288350 129291355 -33308575 + L1MA1 LINE L1 3581 6617 -948 * 2276 134 8 16 chrX 129291349 129291770 -33308160 - L1P5 LINE L1 -515 5636 5219 * 621 133 0 0 chrX 129291766 129291911 -33308019 - L1P LINE L1 -791 5355 5211 * 2840 143 7 0 chrX 129291925 129292448 -33307482 + L1PB2 LINE L1 5672 6197 0 6993 107 15 4 chrX 129292452 129293541 -33306389 + L1MA1 LINE L1 6617 7717 -4 23 0 0 0 chrX 129293541 129293564 -33306366 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 129293604 129293639 -33306291 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chrX 129293888 129293913 -33306017 + AT_rich Low_complexity Low_complexity 1 25 0 8722 182 35 42 chrX 129294174 129297055 -33302875 + LTR49-int LTR ERV1 60 5279 -1479 2548 138 66 25 chrX 129297056 129297527 -33302403 + LTR49-int LTR ERV1 5039 5528 -803 716 175 19 32 chrX 129297530 129297684 -33302246 + MER50 LTR ERV1 14 165 -569 473 222 167 0 chrX 129297703 129297829 -33302101 + MER50 LTR ERV1 117 263 -471 2434 72 0 0 chrX 129297829 129298134 -33301796 + AluY SINE Alu 1 305 -6 820 271 18 21 chrX 129298165 129298501 -33301429 + L1MC1 LINE L1 2736 3070 -3076 322 318 0 23 chrX 129298640 129298769 -33301161 + L1MC1 LINE L1 4795 4920 -1226 542 227 102 92 chrX 129299082 129299566 -33300364 + L1MC1 LINE L1 5349 5545 -619 5902 56 3 0 chrX 129299566 129300303 -33299627 + L1PA7 LINE L1 5415 6153 -1 1611 184 7 0 chrX 129300324 129300628 -33299302 + L1MC1 LINE L1 6022 6327 -6 22 0 0 0 chrX 129301492 129301514 -33298416 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chrX 129302077 129302101 -33297829 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 270 0 0 0 chrX 129302100 129302130 -33297800 + (CA)n Simple_repeat Simple_repeat 1 30 0 439 246 93 13 chrX 129302620 129302808 -33297122 - MIR SINE MIR -26 236 37 629 266 30 12 chrX 129302819 129302988 -33296942 + MIR SINE MIR 32 203 -59 1227 268 44 75 chrX 129303979 129304524 -33295406 + L1ME1 LINE L1 34 561 -5835 2522 244 42 64 chrX 129304568 129305323 -33294607 - MER21B LTR ERV1 -106 757 19 1581 265 73 29 chrX 129305337 129306035 -33293895 + L1ME1 LINE L1 560 1288 -5108 * 2063 234 107 8 chrX 129306024 129306746 -33293184 + L1ME1 LINE L1 4143 4935 -1280 245 197 33 0 chrX 129306752 129306813 -33293117 - L1MB2 LINE L1 -15 6156 6094 4159 196 16 35 chrX 129306813 129308667 -33291263 - L1MB3 LINE L1 -42 6198 4381 * 5835 169 24 17 chrX 129308654 129310462 -33289468 - L1MB3 LINE L1 -4379 1825 8 * 6090 248 14 36 chrX 129310429 129312106 -33287824 - L1PBa LINE L1 -5219 1644 6 7129 183 50 121 chrX 129312119 129312321 -33287609 - L1M4c LINE L1 -4094 2290 2075 243 0 0 0 chrX 129312321 129312348 -33287582 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7129 183 50 121 chrX 129312348 129313946 -33285984 - L1M4c LINE L1 -4309 2075 707 207 0 0 0 chrX 129313946 129313969 -33285961 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7129 183 50 121 chrX 129313969 129314616 -33285314 - L1M4c LINE L1 -5677 707 16 1889 256 75 22 chrX 129314623 129315061 -33284869 + L1ME1 LINE L1 4918 5331 -1072 1339 134 25 38 chrX 129315061 129315300 -33284630 - MER46A DNA MER2_type 0 236 1 1889 256 75 22 chrX 129315300 129316099 -33283831 + L1ME1 LINE L1 5331 6399 -4 2131 111 10 0 chrX 129316519 129316807 -33283123 - AluSc SINE Alu -18 291 1 883 235 9 18 chrX 129316841 129317058 -33282872 - MER20 DNA MER1_type -4 215 1 3007 53 0 0 chrX 129317459 129317834 -33282096 - L1PA4 LINE L1 -1049 5097 4723 7661 23 0 0 chrX 129317834 129318901 -33281029 + L1PA4 LINE L1 5088 6154 -1 182 379 8 48 chrX 129318905 129319029 -33280901 - MIR3 SINE MIR -5 203 85 4386 177 22 21 chrX 129319537 129320689 -33279241 - L1MA6 LINE L1 -675 5625 4463 3633 146 20 15 chrX 129320689 129320807 -33279123 + L1MA6 LINE L1 5647 5763 -537 2100 110 0 32 chrX 129320807 129321117 -33278813 - AluY SINE Alu -11 300 1 3633 146 20 15 chrX 129321117 129321646 -33278284 + L1MA6 LINE L1 5763 6300 0 1257 270 36 0 chrX 129322261 129322620 -33277310 - L1M4 LINE L1 -1776 4370 3999 250 250 125 27 chrX 129322649 129322761 -33277169 + MIR SINE MIR 128 250 -12 1141 296 137 8 chrX 129322850 129323252 -33276678 + L2 LINE L2 977 1430 -1884 431 356 55 39 chrX 129323290 129323832 -33276098 + L1MC5 LINE L1 4628 5177 -969 789 280 124 53 chrX 129323911 129325297 -33274633 + L1MC5 LINE L1 5266 6831 -1148 377 143 39 0 chrX 129325297 129325374 -33274556 + L1MA7 LINE L1 6206 6285 -6 789 280 124 53 chrX 129325374 129325822 -33274108 + L1MC5 LINE L1 6831 7246 -733 821 236 75 59 chrX 129325925 129326417 -33273513 + L1MC5 LINE L1 7262 7761 -200 1058 308 63 14 chrX 129326535 129326950 -33272980 + L2 LINE L2 1420 1854 -1460 4903 151 46 7 chrX 129326950 129327820 -33272110 + HSMAR2 DNA Mariner 10 913 -389 406 162 50 0 chrX 129327816 129327915 -33272015 + HSMAR2 DNA Mariner 1198 1301 -1 * 27 29 0 0 chrX 129327978 129328012 -33271918 + AT_rich Low_complexity Low_complexity 1 34 0 2269 84 0 7 chrX 129328071 129328367 -33271563 + AluY SINE Alu 1 294 -17 382 164 27 14 chrX 129328907 129328980 -33270950 + Charlie4 DNA MER1_type 112 185 -1776 643 272 7 14 chrX 129329001 129329148 -33270782 - LTR28 LTR ERV1 0 1020 875 1511 168 18 119 chrX 129329149 129329536 -33270394 - LTR28-int LTR ERV1 -6055 1036 689 2236 94 38 189 chrX 129329537 129330071 -33269859 + MLT2A2 LTR ERVL 1 453 0 3606 115 0 0 chrX 129330071 129330584 -33269346 + HERVL-A2 LTR ERVL 1 513 -5141 1662 219 81 51 chrX 129330578 129330683 -33269247 - LTR28-int LTR ERV1 -2894 194 422 * 2217 100 3 6 chrX 129330683 129330994 -33268936 - AluSp SINE Alu -3 310 1 1662 219 81 51 chrX 129330994 129331354 -33268576 - LTR28-int LTR ERV1 -2665 423 75 600 180 0 23 chrX 129331523 129331651 -33268279 - LTR28 LTR ERV1 0 1020 896 * 955 222 99 61 chrX 129331636 129332342 -33267588 - LTR28 LTR ERV1 -78 558 1 11980 15 6 0 chrX 129332351 129333647 -33266283 + Charlie4 DNA MER1_type 225 1556 -405 234 0 0 0 chrX 129333647 129333673 -33266257 + (TA)n Simple_repeat Simple_repeat 2 27 0 11980 15 6 0 chrX 129333673 129334039 -33265891 + Charlie4 DNA MER1_type 1556 1918 -43 1344 111 0 0 chrX 129334039 129334229 -33265701 - MER30B DNA MER1_type 0 190 1 228 104 0 42 chrX 129334302 129334350 -33265580 + LTR66 LTR ERVL 394 439 -171 318 235 0 82 chrX 129334350 129334448 -33265482 - L1MC4 LINE L1 -1339 6703 6614 629 281 0 41 chrX 129335407 129335603 -33264327 + MER5A DNA MER1_type 2 189 0 261 268 25 40 chrX 129335631 129335740 -33264190 + MIR SINE MIR 50 161 -65 233 313 47 47 chrX 129335778 129335928 -33264002 + MIR SINE MIR 107 256 -6 2679 26 0 3 chrX 129336161 129336470 -33263460 + AluY SINE Alu 1 308 -3 216 0 0 0 chrX 129336470 129336494 -33263436 + (TA)n Simple_repeat Simple_repeat 2 25 0 1369 109 9 0 chrX 129336495 129336705 -33263225 + L1MA1 LINE L1 6091 6302 0 225 0 0 0 chrX 129337502 129337527 -33262403 + (TA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chrX 129338133 129338154 -33261776 + AT_rich Low_complexity Low_complexity 1 21 0 703 297 55 30 chrX 129338507 129338743 -33261187 - MIR SINE MIR -2 260 19 312 268 62 10 chrX 129339566 129339663 -33260267 + L3 LINE CR1 1474 1575 -2 323 313 121 36 chrX 129339793 129340017 -33259913 - MIR SINE MIR -5 257 15 24 53 0 0 chrX 129341265 129341303 -33258627 + AT_rich Low_complexity Low_complexity 1 38 0 304 328 94 8 chrX 129341481 129341609 -33258321 + MIR SINE MIR 84 222 -40 2186 101 0 0 chrX 129341730 129342016 -33257914 + AluSq SINE Alu 13 298 -15 3702 232 27 18 chrX 129342978 129343202 -33256728 - L1MB7 LINE L1 -9 6175 5955 342 0 0 0 chrX 129343202 129343240 -33256690 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2031 81 37 7 chrX 129343240 129343513 -33256417 - AluY SINE Alu -30 281 1 3702 232 27 18 chrX 129343513 129344360 -33255570 - L1MB7 LINE L1 -228 5956 5091 904 213 124 19 chrX 129344392 129344750 -33255180 + MER57A LTR ERV1 48 403 0 2079 258 68 10 chrX 129344750 129345530 -33254400 - L1MB7 LINE L1 -1042 5104 4271 417 218 136 14 chrX 129345571 129345718 -33254212 + Charlie8 DNA MER1_type 325 489 -1928 260 303 19 135 chrX 129345812 129346020 -33253910 + MIR SINE MIR 29 212 -50 4437 57 5 3 chrX 129347026 129347602 -33252328 + L1PA7 LINE L1 5572 6148 -6 200 329 12 0 chrX 129348442 129348527 -33251403 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chrX 129349361 129349390 -33250540 + AT_rich Low_complexity Low_complexity 1 29 0 453 270 77 5 chrX 129350416 129350612 -33249318 + MLT1D LTR MaLR 27 236 -269 388 266 28 9 chrX 129350731 129350840 -33249090 + LTR25 LTR ERV1 248 358 -436 885 165 18 6 chrX 129351005 129351190 -33248740 + MER61E LTR ERV1 341 774 -20 1104 248 18 12 chrX 129351215 129351499 -33248431 + MLT1D LTR MaLR 245 505 0 21 0 0 0 chrX 129351575 129351596 -33248334 + AT_rich Low_complexity Low_complexity 1 21 0 435 308 49 7 chrX 129352011 129352154 -33247776 + MIR SINE MIR 96 244 -18 23 0 0 0 chrX 129352327 129352350 -33247580 + AT_rich Low_complexity Low_complexity 1 23 0 1002 237 21 91 chrX 129352382 129352754 -33247176 + L1ME1 LINE L1 5756 6101 -65 248 0 31 0 chrX 129352761 129352793 -33247137 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2072 102 3 3 chrX 129352797 129353082 -33246848 - AluSx SINE Alu -27 285 1 3167 121 49 18 chrX 129353082 129353634 -33246296 + L1PB2 LINE L1 5581 6149 -2 4518 219 46 6 chrX 129353649 129354607 -33245323 + L1MA4 LINE L1 15 1010 -4318 8228 186 46 11 chrX 129354607 129357276 -33242654 + L1MA4 LINE L1 3717 6482 0 495 175 0 0 chrX 129357282 129357362 -33242568 + L1M3f LINE L1 2880 2959 -3369 * 3362 176 17 0 chrX 129357360 129358002 -33241928 - L1P LINE L1 -1158 4988 4336 281 100 0 0 chrX 129358001 129358041 -33241889 + L1PA15 LINE L1 6117 6156 -9 * 486 269 19 37 chrX 129358109 129358325 -33241605 + L1M3f LINE L1 2993 3204 -3124 198 0 0 0 chrX 129358697 129358719 -33241211 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3499 43 0 0 chrX 129358719 129359142 -33240788 - L1PA5 LINE L1 -18 6136 5714 16658 39 5 0 chrX 129359142 129361535 -33238395 + L1PA5 LINE L1 3323 5722 -433 327 266 84 0 chrX 129361531 129361674 -33238256 + L1M3f LINE L1 3189 3343 -2985 * 404 289 8 16 chrX 129361782 129361903 -33238027 + FLAM_A SINE Alu 14 133 0 4173 259 64 26 chrX 129361916 129364382 -33235548 + L1ME2 LINE L1 3625 6175 -171 7698 133 3 1 chrX 129364405 129365544 -33234386 - HERVL-A2 LTR ERVL -4513 1141 1 1808 169 105 20 chrX 129365544 129366063 -33233867 - MLT2A2 LTR ERVL 0 554 1 533 259 142 5 chrX 129366064 129366197 -33233733 + HAL1 LINE L1 2072 2185 -322 380 20 0 20 chrX 129366197 129366247 -33233683 + (TG)n Simple_repeat Simple_repeat 1 49 0 533 259 142 5 chrX 129366247 129366258 -33233672 + HAL1 LINE L1 2185 2193 -314 1227 236 174 62 chrX 129366258 129366386 -33233544 - MLT1E2 LTR MaLR 0 626 514 2007 118 0 0 chrX 129366386 129366723 -33233207 + AluSc SINE Alu 1 337 0 1227 236 174 62 chrX 129366723 129367156 -33232774 - MLT1E2 LTR MaLR -112 514 1 533 259 142 5 chrX 129367156 129367215 -33232715 + HAL1 LINE L1 2193 2304 -203 429 255 239 11 chrX 129367368 129367556 -33232374 + MIR SINE MIR 20 250 -12 4787 122 24 27 chrX 129368075 129368856 -33231074 + MER4E LTR ERV1 1 779 0 206 360 70 30 chrX 129368949 129369049 -33230881 + L2 LINE L2 3160 3263 -9 35672 36 1 0 chrX 129372000 129377162 -33222768 + L1PA3 LINE L1 978 6142 -13 5292 177 23 9 chrX 129377214 129378320 -33221610 - L1PA15 LINE L1 -1 6164 5075 2025 156 28 17 chrX 129378320 129378680 -33221250 + THE1B LTR MaLR 1 364 0 9379 125 51 14 chrX 129378681 129380204 -33219726 + THE1B-int LTR MaLR 2 1580 0 1944 189 28 0 chrX 129380204 129380558 -33219372 + THE1B LTR MaLR 1 364 0 5292 177 23 9 chrX 129380558 129381179 -33218751 - L1PA15 LINE L1 -1089 5076 4417 303 287 85 11 chrX 129381182 129381276 -33218654 + L2 LINE L2 3163 3263 -9 385 131 0 16 chrX 129382331 129382392 -33217538 - MER4A-int LTR ERV1 -6538 60 1 2181 136 15 67 chrX 129382395 129382915 -33217015 - MER4A LTR ERV1 0 664 101 2714 16 0 0 chrX 129382921 129383232 -33216698 - L1PA3 LINE L1 -1 6154 5844 9476 26 6 1 chrX 129383232 129384363 -33215567 + L1P LINE L1 3863 4999 -1147 566 118 11 11 chrX 129384363 129384456 -33215474 - MER4A LTR ERV1 -549 115 23 12365 102 5 31 chrX 129385342 129387270 -33212660 + HERVH LTR ERV1 1114 2992 -4721 7796 118 16 4 chrX 129387256 129389308 -33210622 + HERVH LTR ERV1 3140 5286 -1805 * 1469 132 0 0 chrX 129389309 129389529 -33210401 + HERVH LTR ERV1 5600 5819 -1894 2235 95 68 14 chrX 129389529 129389899 -33210031 + HERVH LTR ERV1 7324 7713 0 1991 73 11 6 chrX 129389899 129390264 -33209666 + LTR7 LTR ERV1 1 417 -33 3687 158 16 5 chrX 129390267 129390912 -33209018 + L1PB4 LINE L1 5502 6153 -3 331 363 26 5 chrX 129390933 129391000 -33208930 - MIR SINE MIR -13 249 185 1818 189 0 0 chrX 129391000 129391297 -33208633 + AluJb SINE Alu 1 297 -15 331 363 26 5 chrX 129391297 129391422 -33208508 - MIR SINE MIR -77 185 53 586 378 33 6 chrX 129394278 129394614 -33205316 - L3 LINE CR1 -3 1574 1230 2913 191 23 9 chrX 129394629 129395157 -33204773 + MLT2B3 LTR ERVL 1 535 -19 186 43 0 0 chrX 129395157 129395180 -33204750 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 271 104 71 0 chrX 129395189 129395247 -33204683 + MLT2B3 LTR ERVL 458 554 0 22 56 0 0 chrX 129395668 129395704 -33204226 + AT_rich Low_complexity Low_complexity 1 36 0 244 231 0 0 chrX 129396728 129396780 -33203150 + L2 LINE L2 3262 3313 0 26 0 0 0 chrX 129397245 129397271 -33202659 + AT_rich Low_complexity Low_complexity 1 26 0 369 266 54 54 chrX 129397522 129397800 -33202130 + L1MC5 LINE L1 7272 7549 -412 222 37 0 0 chrX 129397811 129397838 -33202092 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1283 219 18 11 chrX 129397841 129398119 -33201811 - AluJo SINE Alu -30 282 3 350 301 127 38 chrX 129398147 129398463 -33201467 + L1MC4 LINE L1 7696 8039 -3 222 250 0 0 chrX 129398482 129398530 -33201400 + (TA)n Simple_repeat Simple_repeat 2 49 0 282 303 34 11 chrX 129398531 129398620 -33201310 - L2 LINE L2 -14 3258 3168 1869 243 70 2 chrX 129398677 129399220 -33200710 - L1MB7 LINE L1 -10 6174 5595 8569 169 46 13 chrX 129399221 129400794 -33199136 + ERVL-B1 LTR ERVL 4131 5754 -10 603 183 40 0 chrX 129400800 129400925 -33199005 + MLT2B1 LTR ERVL 1 130 -390 4107 191 32 31 chrX 129400925 129401968 -33197962 - MER52A LTR ERV1 0 1755 1 761 274 90 57 chrX 129401970 129402324 -33197606 + MLT2B3 LTR ERVL 129 494 -60 483 18 0 0 chrX 129402325 129402381 -33197549 + (TG)n Simple_repeat Simple_repeat 2 57 0 437 175 225 8 chrX 129402410 129402530 -33197400 + MLT2B1 LTR ERVL 375 520 0 332 325 13 40 chrX 129402829 129402876 -33197054 + MIR SINE MIR 2 49 -213 2044 154 120 5 chrX 129402876 129403260 -33196670 + MSTA LTR MaLR 1 428 0 332 325 13 40 chrX 129403260 129403363 -33196567 + MIR SINE MIR 49 148 -114 1301 229 40 13 chrX 129404018 129404320 -33195610 + AluJo SINE Alu 1 310 -2 31 0 0 0 chrX 129404580 129404611 -33195319 + AT_rich Low_complexity Low_complexity 1 31 0 257 257 84 92 chrX 129406399 129406683 -33193247 - L1MB7 LINE L1 -908 5238 4957 702 279 36 44 chrX 129406703 129407090 -33192840 + L1ME3 LINE L1 5272 5655 -515 519 245 156 5 chrX 129407115 129407327 -33192603 + L1ME3 LINE L1 5732 5975 -195 247 127 47 33 chrX 129407341 129407491 -33192439 + (TATAA)n Simple_repeat Simple_repeat 1 152 0 245 339 23 0 chrX 129407530 129407660 -33192270 + L1ME3 LINE L1 5999 6131 -31 33 43 0 0 chrX 129407686 129407733 -33192197 + AT_rich Low_complexity Low_complexity 1 47 0 41887 43 23 3 chrX 129407733 129413762 -33186168 - L1PA4 LINE L1 -3 6152 1 343 332 62 39 chrX 129414290 129414498 -33185432 - MIR SINE MIR -49 213 1 219 380 10 5 chrX 129414535 129414654 -33185276 + MIR SINE MIR 45 161 -47 200 289 0 0 chrX 129414734 129414772 -33185158 + L2 LINE L2 3254 3291 -22 321 298 149 37 chrX 129414831 129415046 -33184884 + MIR SINE MIR 17 255 -7 192 304 98 33 chrX 129415165 129415257 -33184673 - L2 LINE L2 -2 3311 3214 240 170 0 0 chrX 129415397 129415450 -33184480 + CT-rich Low_complexity Low_complexity 1 53 0 272 333 0 38 chrX 129415773 129415905 -33184025 - MIR SINE MIR -25 237 111 262 323 124 13 chrX 129415923 129416098 -33183832 + MIR3 SINE MIR 2 199 -9 21 57 0 0 chrX 129416464 129416499 -33183431 + AT_rich Low_complexity Low_complexity 1 35 0 331 303 156 0 chrX 129416619 129416741 -33183189 - MER5A DNA MER1_type 0 189 49 16066 215 40 14 chrX 129416741 129420971 -33178959 + L1M1 LINE L1 17 4622 -2943 2551 33 0 0 chrX 129420970 129421271 -33178659 + L1P2 LINE L1 5371 5671 -484 * 7206 35 15 0 chrX 129421269 129422142 -33177788 - L1P LINE L1 -1729 4417 3532 7254 43 4 2 chrX 129422144 129423580 -33176350 + L1PA4 LINE L1 4717 6154 -1 980 182 5 0 chrX 129423588 129423797 -33176133 + L1M1 LINE L1 5802 6011 -1554 2068 106 7 17 chrX 129423802 129424104 -33175826 + AluSc SINE Alu 1 299 -10 187 280 60 0 chrX 129427091 129427141 -33172789 + L2 LINE L2 3251 3303 -10 541 296 123 25 chrX 129427306 129427590 -33172340 - L2 LINE L2 -61 3252 2941 298 292 80 18 chrX 129427611 129427724 -33172206 - L2 LINE L2 -1096 2218 2099 451 340 7 7 chrX 129428526 129428673 -33171257 - MIR3 SINE MIR -35 173 27 605 318 12 45 chrX 129429051 129429296 -33170634 - MIR SINE MIR -23 239 3 23 0 0 0 chrX 129429302 129429325 -33170605 + AT_rich Low_complexity Low_complexity 1 23 0 258 193 0 0 chrX 129430746 129430803 -33169127 + CT-rich Low_complexity Low_complexity 2 58 0 952 164 40 10 chrX 129431434 129431635 -33168295 - MER3 DNA MER1_type -1 208 2 321 26 0 0 chrX 129431735 129431773 -33168157 + (TG)n Simple_repeat Simple_repeat 2 39 0 2563 54 0 10 chrX 129431971 129432285 -33167645 - AluY SINE Alu 0 311 1 261 337 50 0 chrX 129432373 129432474 -33167456 - MIR3 SINE MIR -8 200 95 512 90 26 0 chrX 129432703 129432781 -33167149 + MADE1 DNA Mariner 1 80 0 746 208 30 15 chrX 129434904 129435101 -33164829 + Charlie4 DNA MER1_type 33 232 -1729 726 210 65 23 chrX 129435118 129435332 -33164598 + Charlie4 DNA MER1_type 1739 1961 0 215 243 29 29 chrX 129435465 129435535 -33164395 - MER5A DNA MER1_type -28 161 92 * 299 263 105 0 chrX 129435490 129435566 -33164364 + MER5A DNA MER1_type 63 146 -43 973 141 5 11 chrX 129435681 129435849 -33164081 + L1PA6 LINE L1 5896 6062 -92 * 13764 202 37 10 chrX 129435848 129435983 -33163947 + L1PB1 LINE L1 1890 2020 -4847 1791 162 0 0 chrX 129435983 129436261 -33163669 + AluSx SINE Alu 33 310 -2 2104 117 3 13 chrX 129436266 129436566 -33163364 + AluSx SINE Alu 1 297 -15 13764 202 37 10 chrX 129436566 129438625 -33161305 + L1PB1 LINE L1 2023 4024 -2843 2306 75 0 3 chrX 129438625 129438931 -33160999 + L1PA7 LINE L1 5842 6146 -8 13764 202 37 10 chrX 129438931 129439727 -33160203 + L1PB1 LINE L1 4024 4797 -2070 2004 122 0 7 chrX 129439727 129440050 -33159880 + AluSx SINE Alu 1 321 0 13764 202 37 10 chrX 129440050 129441878 -33158052 + L1PB1 LINE L1 4797 6867 0 1542 230 76 4 chrX 129441901 129442388 -33157542 - L1M4c LINE L1 -3900 2484 1963 670 233 0 13 chrX 129442403 129442562 -33157368 - L1M4c LINE L1 -4554 1830 1674 902 197 0 22 chrX 129442562 129442745 -33157185 + MLT1C LTR MaLR 289 467 0 6488 226 43 6 chrX 129442745 129444185 -33155745 - ERVL-C1 LTR ERVL -200 5564 4072 9475 242 39 15 chrX 129444208 129447236 -33152694 - ERVL-C1 LTR ERVL -1912 3852 635 192 234 70 95 chrX 129447236 129447394 -33152536 + L2 LINE L2 1894 2047 -1267 695 305 42 59 chrX 129447399 129447877 -33152053 - ERVL-C1 LTR ERVL -5293 471 2 1640 222 0 22 chrX 129448073 129448433 -33151497 - MLT2C1 LTR ERVL -45 352 1 22 70 0 0 chrX 129448448 129448491 -33151439 + AT_rich Low_complexity Low_complexity 1 43 0 1536 210 12 74 chrX 129448605 129449009 -33150921 + MLT1B LTR MaLR 1 379 -11 3012 237 78 31 chrX 129449032 129449993 -33149937 - L1MC4 LINE L1 -193 7849 6844 4688 143 18 3 chrX 129452331 129453091 -33146839 - Tigger1 DNA MER2_type 0 2418 1647 589 176 20 40 chrX 129453098 129453246 -33146684 - L1 LINE L1 -1082 5064 4920 3334 167 43 0 chrX 129453253 129453851 -33146079 - Tigger1 DNA MER2_type -1794 624 1 5870 115 6 11 chrX 129456040 129457850 -33142080 + L1PA13 LINE L1 4402 6158 -5 267 278 111 28 chrX 129458036 129458108 -33141822 - MIR SINE MIR -115 93 16 881 236 32 90 chrX 129458894 129459250 -33140680 - MLT1A1 LTR MaLR -33 342 1 358 317 37 45 chrX 129459591 129459970 -33139960 - L1 LINE L1 -1240 4906 4531 525 270 38 27 chrX 129460745 129460930 -33139000 - L2 LINE L2 -4 3309 3123 26 0 0 0 chrX 129461535 129461561 -33138369 + AT_rich Low_complexity Low_complexity 1 26 0 367 366 5 46 chrX 129461603 129461819 -33138111 + MIR SINE MIR 15 221 -41 207 203 0 0 chrX 129461859 129461928 -33138002 + (TAA)n Simple_repeat Simple_repeat 1 69 0 194 344 47 16 chrX 129462400 129462528 -33137402 - MIR SINE MIR -64 198 67 28241 131 24 58 chrX 129462800 129469158 -33130772 + L1PA6 LINE L1 17 6147 -7 24 0 0 0 chrX 129469160 129469184 -33130746 + AT_rich Low_complexity Low_complexity 1 24 0 198 71 0 0 chrX 129470099 129470127 -33129803 + (T)n Simple_repeat Simple_repeat 1 28 0 308 311 9 61 chrX 129470375 129470538 -33129392 - MIR SINE MIR -71 191 39 1931 159 16 39 chrX 129470684 129471068 -33128862 - THE1C LTR MaLR 0 375 1 21 0 0 0 chrX 129471210 129471231 -33128699 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chrX 129471410 129471434 -33128496 + (TTTTTA)n Simple_repeat Simple_repeat 6 29 0 572 56 0 0 chrX 129471445 129471517 -33128413 - L1PA5 LINE L1 -9 6145 6074 1444 209 68 9 chrX 129471766 129472105 -33127825 + MLT1A1 LTR MaLR 6 364 -1 541 267 43 67 chrX 129473157 129473367 -33126563 - MIR SINE MIR 0 262 58 36 23 0 0 chrX 129473928 129473971 -33125959 + AT_rich Low_complexity Low_complexity 1 43 0 1693 177 56 40 chrX 129474350 129474746 -33125184 - MER93a LTR ERV1 0 402 1 1604 201 0 3 chrX 129475154 129475457 -33124473 - AluJb SINE Alu -10 302 1 488 132 209 0 chrX 129475905 129475996 -33123934 - LTR49 LTR ERV1 0 595 486 330 192 51 13 chrX 129475996 129476074 -33123856 - LTR48 LTR ERV1 -227 560 480 772 172 30 94 chrX 129476186 129476389 -33123541 - LTR48B LTR ERV1 -452 192 3 499 339 59 18 chrX 129476693 129476847 -33123083 + MLT1J2 LTR MaLR 34 180 -270 222 37 0 0 chrX 129476847 129476874 -33123056 + (TC)n Simple_repeat Simple_repeat 2 28 0 197 83 28 0 chrX 129476873 129476909 -33123021 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 499 339 59 18 chrX 129476874 129477040 -33122890 + MLT1J2 LTR MaLR 180 331 -119 2258 148 24 47 chrX 129477962 129478110 -33121820 - L1PA16 LINE L1 -20 6146 5996 1631 197 0 0 chrX 129478110 129478400 -33121530 - AluSx SINE Alu -22 290 1 2258 148 24 47 chrX 129478400 129478703 -33121227 - L1PA16 LINE L1 -170 5996 5705 186 260 0 41 chrX 129479583 129479656 -33120274 + L2 LINE L2 3168 3237 -76 225 278 46 46 chrX 129480591 129480699 -33119231 - L2 LINE L2 -28 3244 3137 299 309 62 0 chrX 129481474 129481571 -33118359 + MIR3 SINE MIR 85 187 -21 413 204 39 10 chrX 129482077 129482180 -33117750 + L1MD2 LINE L1 6243 6348 -11 331 328 73 5 chrX 129482204 129482396 -33117534 + HAL1 LINE L1 714 918 -1589 189 74 0 0 chrX 129482478 129482505 -33117425 + (CA)n Simple_repeat Simple_repeat 2 28 0 346 221 25 6 chrX 129482514 129482677 -33117253 + (TA)n Simple_repeat Simple_repeat 1 166 0 1429 273 134 55 chrX 129482708 129483998 -33115932 + HAL1 LINE L1 1116 2507 0 2526 114 0 11 chrX 129484594 129484962 -33114968 - THE1B LTR MaLR 0 364 1 182 370 65 0 chrX 129487133 129487225 -33112705 - MIR SINE MIR -64 144 47 1568 159 56 19 chrX 129487758 129488079 -33111851 - MER46B DNA MER2_type -28 208 1 288 330 41 0 chrX 129488085 129488182 -33111748 + MIR SINE MIR 81 181 -81 6076 25 0 0 chrX 129488218 129488941 -33110989 - L1PA3 LINE L1 -1096 5050 4328 7586 26 2 0 chrX 129488941 129490045 -33109885 + L1PA3 LINE L1 5050 6155 0 194 105 26 0 chrX 129490174 129490212 -33109718 + A-rich Low_complexity Low_complexity 2 40 0 193 171 0 0 chrX 129490361 129490396 -33109534 + L2 LINE L2 3279 3313 0 696 275 19 24 chrX 129490464 129490671 -33109259 + MIR SINE MIR 43 248 -14 327 263 85 79 chrX 129491713 129492391 -33107539 + L1M4 LINE L1 3822 4505 -1641 1332 215 76 25 chrX 129492391 129492759 -33107171 + MLT1B LTR MaLR 4 390 0 327 263 85 79 chrX 129492759 129492835 -33107095 + L1M4 LINE L1 4505 4579 -1567 422 261 26 17 chrX 129492855 129492970 -33106960 - L2 LINE L2 -8 3305 3190 250 285 111 14 chrX 129493053 129493260 -33106670 + L1M4 LINE L1 4600 4826 -1320 259 235 0 12 chrX 129493395 129493433 -33106497 + T-rich Low_complexity Low_complexity 1 38 -42 702 161 0 8 chrX 129493433 129493563 -33106367 - L1MA3 LINE L1 0 6305 6177 259 235 0 12 chrX 129493563 129493605 -33106325 + T-rich Low_complexity Low_complexity 38 80 0 12818 181 30 17 chrX 129493609 129495661 -33104269 - L1MA3 LINE L1 -64 7660 5637 799 28 37 0 chrX 129495661 129495769 -33104161 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 12818 181 30 17 chrX 129495769 129498321 -33101609 - L1MA3 LINE L1 -2087 5637 2993 3066 182 29 28 chrX 129498338 129499020 -33100910 - L1P LINE L1 -2239 3907 3225 7518 196 44 9 chrX 129499026 129502432 -33097498 + L1MA1 LINE L1 2746 6297 -5 4152 209 31 33 chrX 129502447 129503591 -33096339 - L1 LINE L1 -2424 5141 4000 3812 245 19 40 chrX 129503598 129504615 -33095315 - L1 LINE L1 -6549 1016 22 291 343 0 19 chrX 129504628 129504736 -33095194 - MIR SINE MIR -94 168 63 219 246 0 0 chrX 129505326 129505387 -33094543 + (TA)n Simple_repeat Simple_repeat 1 61 0 258 266 114 0 chrX 129505390 129505469 -33094461 - MIR SINE MIR -118 144 57 286 367 142 29 chrX 129505598 129505873 -33094057 + L2 LINE L2 2579 2884 -430 185 381 12 0 chrX 129506156 129506240 -33093690 + L2 LINE L2 3188 3272 0 27 0 0 0 chrX 129506883 129506910 -33093020 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chrX 129506976 129507033 -33092897 + AT_rich Low_complexity Low_complexity 1 57 0 1874 147 0 7 chrX 129507153 129507439 -33092491 + MER61D LTR ERV1 1 284 -217 5357 169 39 21 chrX 129507440 129510088 -33089842 + MER61D-int LTR ERV1 610 4824 -393 * 10719 108 9 24 chrX 129510087 129511128 -33088802 + MER61D-int LTR ERV1 2224 3279 -3717 1818 112 9 109 chrX 129511128 129511205 -33088725 - AluSx SINE Alu -8 304 221 3446 205 25 63 chrX 129511205 129512213 -33087717 + LTR5 LTR ERVK 1 969 0 1818 112 9 109 chrX 129512213 129512473 -33087457 - AluSx SINE Alu -91 221 1 10719 108 9 24 chrX 129512473 129513549 -33086381 + MER61D-int LTR ERV1 3279 6994 -2 3050 162 10 8 chrX 129513552 129514052 -33085878 + MER61D LTR ERV1 1 501 0 889 318 80 29 chrX 129514374 129515196 -33084734 - L1ME3A LINE L1 -9 6161 5298 1855 159 3 3 chrX 129515215 129515511 -33084419 - AluSq SINE Alu -17 296 1 2372 226 8 2 chrX 129515532 129516064 -33083866 - L1ME LINE L1 -3388 4177 3643 665 99 46 26 chrX 129516074 129516226 -33083704 + CT-rich Low_complexity Low_complexity 1 155 0 894 235 29 18 chrX 129516226 129516507 -33083423 - L1ME LINE L1 -3938 3627 3344 871 236 59 31 chrX 129517671 129517943 -33081987 - L1MC3 LINE L1 0 7785 7503 1866 169 148 5 chrX 129517943 129518316 -33081614 - MSTA LTR MaLR 0 428 3 5149 181 57 16 chrX 129518318 129519309 -33080621 - MSTA-int LTR MaLR 0 1580 550 939 41 16 0 chrX 129519295 129519416 -33080514 - L1P1 LINE L1 -678 5477 5355 * 658 13 0 0 chrX 129519414 129519492 -33080438 + L1P1 LINE L1 5710 5787 -368 * 42591 33 22 1 chrX 129519492 129525517 -33074413 + L1HS LINE L1 2 6155 0 3008 188 14 1 chrX 129525529 129526122 -33073808 - MSTA-int LTR MaLR -1019 571 1 1876 176 104 5 chrX 129526122 129526508 -33073422 - MSTA LTR MaLR 0 428 5 376 315 41 16 chrX 129526601 129526805 -33073125 - L1ME LINE L1 -5095 2460 2301 6312 120 0 14 chrX 129528078 129529008 -33070922 - THE1A-int LTR MaLR -663 917 1 1798 117 0 0 chrX 129529008 129529255 -33070675 - THE1A LTR MaLR 0 355 109 557 362 42 18 chrX 129529289 129529632 -33070298 + L1PBa LINE L1 851 1118 -5744 186 71 0 0 chrX 129529632 129529660 -33070270 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 557 362 42 18 chrX 129529660 129529994 -33069936 + L1PBa LINE L1 1118 1443 -5419 * 11429 237 44 14 chrX 129529990 129536276 -33063654 + L1PB3 LINE L1 1 6853 -363 181 250 11 11 chrX 129536276 129536364 -33063566 + (TA)n Simple_repeat Simple_repeat 1 88 0 231 250 24 36 chrX 129536380 129536464 -33063466 - L1MC4 LINE L1 -1336 6706 6624 1951 183 0 21 chrX 129536471 129536849 -33063081 + L1PB3 LINE L1 6845 7214 -2 235 360 0 11 chrX 129536849 129536938 -33062992 - MIR SINE MIR -165 97 10 7181 221 23 86 chrX 129536992 129537543 -33062387 - L1PA15 LINE L1 -1 6164 5580 1905 163 0 7 chrX 129537543 129537850 -33062080 - AluSx SINE Alu -7 305 1 7181 221 23 86 chrX 129537850 129538429 -33061501 - L1PA15 LINE L1 -585 5580 4966 2308 89 3 0 chrX 129538429 129538731 -33061199 - AluY SINE Alu -8 303 1 7181 221 23 86 chrX 129538731 129539106 -33060824 - L1PA15 LINE L1 -1199 4966 4569 1228 153 47 72 chrX 129539106 129539341 -33060589 - AluSq SINE Alu -80 233 5 7181 221 23 86 chrX 129539341 129541212 -33058718 - L1PA15 LINE L1 -1596 4569 2788 3617 260 53 60 chrX 129542216 129542599 -33057331 + L1MB5 LINE L1 2 386 -6260 2061 103 23 7 chrX 129542599 129542901 -33057029 - AluSq SINE Alu -6 307 1 3617 260 53 60 chrX 129542901 129543665 -33056265 + L1MB5 LINE L1 386 1154 -5492 234 0 0 0 chrX 129543665 129543691 -33056239 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3617 260 53 60 chrX 129543691 129543950 -33055980 + L1MB5 LINE L1 1154 1413 -5233 2379 57 3 7 chrX 129543950 129544250 -33055680 - AluY SINE Alu -12 299 1 3617 260 53 60 chrX 129544250 129544813 -33055117 + L1MB5 LINE L1 1413 1954 -4692 564 251 41 62 chrX 129544814 129545009 -33054921 + MLT1A2 LTR MaLR 1 191 -183 488 251 80 57 chrX 129545054 129545229 -33054701 + MLT1A2 LTR MaLR 191 369 -5 1849 281 59 11 chrX 129545276 129546703 -33053227 + L1MB5 LINE L1 2272 3770 -2874 1685 264 24 51 chrX 129546734 129546824 -33053106 + L1M3e LINE L1 7 98 -6932 2321 49 0 7 chrX 129546824 129547110 -33052820 - AluY SINE Alu -27 284 1 1685 264 24 51 chrX 129547110 129547609 -33052321 + L1M3e LINE L1 98 580 -6450 2999 218 45 25 chrX 129550716 129551467 -33048463 + L1MB5 LINE L1 5887 6652 -20 6053 74 3 51 chrX 129551906 129552818 -33047112 + pTR5 LTR ERV1 393 2606 0 * 48178 87 6 5 chrX 129552818 129559272 -33040658 + HERV9 LTR ERV1 72 6527 -1872 5288 81 8 20 chrX 129559257 129560022 -33039908 + HERV9 LTR ERV1 6665 7420 -979 * 6411 31 13 1 chrX 129560025 129560802 -33039128 + L1PA4 LINE L1 5370 6155 0 513 233 90 26 chrX 129561135 129561308 -33038622 - MIR SINE MIR -44 218 39 264 325 25 25 chrX 129562308 129562428 -33037502 + L3b LINE CR1 1146 1265 -318 27 29 0 0 chrX 129562560 129562594 -33037336 + AT_rich Low_complexity Low_complexity 1 34 0 188 235 78 0 chrX 129563957 129564008 -33035922 - L2 LINE L2 -88 3225 3171 348 198 125 0 chrX 129564054 129564150 -33035780 - L1MA9 LINE L1 -38 6274 6167 1874 254 32 50 chrX 129564168 129564651 -33035279 - L1MA9 LINE L1 -38 6274 5805 390 42 0 0 chrX 129564651 129564699 -33035231 + (TG)n Simple_repeat Simple_repeat 2 49 0 1874 254 32 50 chrX 129564699 129564891 -33035039 - L1MA9 LINE L1 -507 5805 5611 1614 202 31 48 chrX 129564887 129565367 -33034563 + L1 LINE L1 4210 4681 -1465 * 10982 183 110 21 chrX 129565373 129568816 -33031114 - L1 LINE L1 -3174 4391 16 10077 215 20 3 chrX 129568894 129569415 -33030515 + L1M1 LINE L1 3334 3845 -3720 522 0 0 0 chrX 129569415 129569473 -33030457 + (TA)n Simple_repeat Simple_repeat 2 59 0 10077 215 20 3 chrX 129569473 129571544 -33028386 + L1M1 LINE L1 3845 5976 -1589 274 352 31 31 chrX 129572465 129572627 -33027303 - MIR3 SINE MIR -15 193 32 283 317 103 87 chrX 129572867 129573441 -33026489 + L2 LINE L2 2071 2653 -661 330 305 84 13 chrX 129573447 129573601 -33026329 - L2 LINE L2 -769 2545 2381 1244 308 92 21 chrX 129573914 129574534 -33025396 + L2 LINE L2 1172 1835 -1479 296 293 70 25 chrX 129574591 129574748 -33025182 - L1ME3A LINE L1 -15 6155 5992 246 273 26 0 chrX 129574962 129575039 -33024891 - L1ME3A LINE L1 -341 5823 5745 480 28 0 69 chrX 129575062 129575134 -33024796 + L1PA8 LINE L1 6103 6169 -3 12089 189 23 19 chrX 129575166 129580528 -33019402 - L1P5 LINE L1 -363 6504 633 246 314 47 12 chrX 129580997 129581083 -33018847 - MIR SINE MIR -67 141 53 21 57 0 0 chrX 129581368 129581403 -33018527 + AT_rich Low_complexity Low_complexity 1 35 0 222 91 0 0 chrX 129581838 129581871 -33018059 + (TC)n Simple_repeat Simple_repeat 2 34 0 1746 318 48 24 chrX 129583145 129583858 -33016072 - L2 LINE L2 0 3313 2571 939 184 8 73 chrX 129583858 129584092 -33015838 - MER20 DNA MER1_type 0 219 1 1746 318 48 24 chrX 129584092 129584367 -33015563 - L2 LINE L2 -742 2571 2304 521 252 76 44 chrX 129584465 129584806 -33015124 + L1M4 LINE L1 2784 3135 -3011 316 308 70 70 chrX 129584827 129585253 -33014677 + L1M4 LINE L1 3184 3609 -2537 382 311 0 38 chrX 129585589 129585721 -33014209 - MER5B DNA MER1_type -48 130 4 22 0 0 0 chrX 129586863 129586885 -33013045 + AT_rich Low_complexity Low_complexity 1 22 0 468 276 138 17 chrX 129587452 129587684 -33012246 + MIR SINE MIR 3 262 0 21 0 0 0 chrX 129588523 129588544 -33011386 + AT_rich Low_complexity Low_complexity 1 21 0 16782 153 25 8 chrX 129588549 129592364 -33007566 - L1PA10 LINE L1 -11 6472 2589 975 272 12 8 chrX 129592367 129592621 -33007309 - L1PA10 LINE L1 -5620 255 1 29 60 0 0 chrX 129594402 129594452 -33005478 + AT_rich Low_complexity Low_complexity 1 50 0 509 268 24 115 chrX 129595778 129596065 -33003865 - MIR SINE MIR -1 261 1 1552 47 0 0 chrX 129596191 129596414 -33003516 + L1PA4 LINE L1 5948 6170 0 1509 311 71 6 chrX 129597183 129597687 -33002243 - MLT1F LTR MaLR -5 537 1 264 301 0 14 chrX 129597689 129597762 -33002168 + MIR SINE MIR 69 140 -122 352 274 11 0 chrX 129597762 129597857 -33002073 - MLT1H LTR MaLR -2 547 452 2865 168 40 6 chrX 129598087 129598610 -33001320 + MER87 LTR ERV1 1 541 0 517 323 54 6 chrX 129599957 129600124 -32999806 - MER5A DNA MER1_type -3 186 12 346 289 53 26 chrX 129600417 129600531 -32999399 + MIR SINE MIR 13 129 -133 219 371 86 41 chrX 129600923 129601120 -32998810 - L2 LINE L2 -188 3084 2879 * 435 228 0 89 chrX 129601072 129601195 -32998735 - MER5A DNA MER1_type -77 112 1 255 342 18 44 chrX 129602157 129602271 -32997659 + L2 LINE L2 3138 3248 -24 209 324 0 27 chrX 129603632 129603706 -32996224 - MIR SINE MIR 0 262 191 1323 126 70 0 chrX 129604090 129604305 -32995625 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chrX 129604654 129604675 -32995255 + AT_rich Low_complexity Low_complexity 1 21 0 213 266 22 22 chrX 129604924 129605356 -32994574 + A-rich Low_complexity Low_complexity 1 139 0 266 234 0 21 chrX 129604978 129604992 -32994938 + (TAAA)n Simple_repeat Simple_repeat 2 15 -78 1901 146 0 7 chrX 129604992 129605286 -32994644 + AluJo SINE Alu 1 292 -20 266 234 0 21 chrX 129605286 129605365 -32994565 + (TAAA)n Simple_repeat Simple_repeat 15 93 0 339 44 0 0 chrX 129605786 129605831 -32994099 + (CA)n Simple_repeat Simple_repeat 2 46 0 377 313 31 16 chrX 129606092 129606220 -32993710 - L2 LINE L2 0 3313 3184 255 381 0 46 chrX 129606760 129606933 -32992997 - L2 LINE L2 -194 3078 2914 529 308 91 29 chrX 129607672 129607717 -32992213 + Tigger8 DNA MER2_type 7 48 -618 1520 264 84 33 chrX 129607717 129608289 -32991641 - LTR26 LTR ERV1 0 603 3 529 308 91 29 chrX 129608289 129608584 -32991346 + Tigger8 DNA MER2_type 48 368 -298 207 335 114 18 chrX 129608889 129609056 -32990874 - L2 LINE L2 -961 2353 2171 351 310 87 58 chrX 129609103 129610257 -32989673 + L1MEd LINE L1 274 1545 -945 1838 132 41 14 chrX 129610263 129610558 -32989372 - AluSx SINE Alu -4 308 6 207 340 48 0 chrX 129611637 129611740 -32988190 - MIR SINE MIR -1 261 154 276 264 33 66 chrX 129612722 129612813 -32987117 + MIR3 SINE MIR 89 176 -32 194 278 222 11 chrX 129613501 129613591 -32986339 - MIR SINE MIR -120 142 34 646 333 0 6 chrX 129614940 129615117 -32984813 + MIR3 SINE MIR 23 198 -10 5792 188 126 19 chrX 129617612 129618961 -32980969 - L1PA13 LINE L1 -1488 4658 3166 5074 137 34 3 chrX 129618961 129620435 -32979495 + L1PA13 LINE L1 4652 6162 -1 427 275 28 7 chrX 129620443 129620585 -32979345 + MER112 DNA MER1_type 116 260 0 6591 146 63 7 chrX 129620855 129622742 -32977188 + L1MA2 LINE L1 4313 6304 0 22 56 0 0 chrX 129623107 129623143 -32976787 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chrX 129623229 129623264 -32976666 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 129627761 129627789 -32972141 + AT_rich Low_complexity Low_complexity 1 28 0 264 348 17 9 chrX 129628897 129629012 -32970918 - L3 LINE CR1 -393 1184 1069 974 311 46 13 chrX 129629015 129629404 -32970526 + MLT1I LTR MaLR 5 406 -3 312 27 0 0 chrX 129629445 129629482 -32970448 + (CA)n Simple_repeat Simple_repeat 2 38 0 11274 180 48 14 chrX 129629577 129636160 -32963770 + L1PB1 LINE L1 6 6866 -1 1318 214 37 48 chrX 129636187 129636319 -32963611 + MER7A DNA MER2_type 1 133 -2905 1907 143 3 3 chrX 129636319 129636606 -32963324 + AluSx SINE Alu 8 294 -18 1318 214 37 48 chrX 129636606 129636824 -32963106 + MER7A DNA MER2_type 133 345 -1 1153 158 25 0 chrX 129637037 129637239 -32962691 - L1MA6 LINE L1 -23 6277 6071 948 214 16 37 chrX 129637238 129637481 -32962449 + L1MA6 LINE L1 5827 6064 -236 * 282 174 0 0 chrX 129637524 129637570 -32962360 + MLT1I LTR MaLR 362 407 -2 9183 173 19 29 chrX 129637591 129640764 -32959166 - L1MA2 LINE L1 0 7723 4583 7828 14 2 0 chrX 129640764 129642393 -32957537 - L1PA3 LINE L1 0 6155 4525 6674 24 0 0 chrX 129642393 129643178 -32956752 + L1PA3 LINE L1 3731 4515 -1631 205 257 229 29 chrX 129643403 129643508 -32956422 - L2 LINE L2 -5 3267 3142 329 151 0 19 chrX 129643763 129643816 -32956114 + L1MD3 LINE L1 7209 7260 -735 322 292 22 0 chrX 129643820 129643909 -32956021 + MLT1F1 LTR MaLR 1 91 -476 265 246 0 0 chrX 129643909 129643970 -32955960 + L1MD3 LINE L1 7383 7443 -552 18032 182 35 10 chrX 129644008 129647711 -32952219 - L1MA2 LINE L1 -2982 4583 761 2117 124 75 73 chrX 129647711 129647782 -32952148 - MSTA LTR MaLR 0 428 359 2046 146 0 23 chrX 129647782 129648091 -32951839 + AluSg SINE Alu 1 302 -8 2117 124 75 73 chrX 129648091 129648446 -32951484 - MSTA LTR MaLR -69 359 1 18032 182 35 10 chrX 129648446 129648956 -32950974 - L1MA2 LINE L1 -6804 761 265 4539 65 20 10 chrX 129648956 129649978 -32949952 - MER11A LTR ERVK 0 1266 1 1135 229 24 12 chrX 129649978 129650227 -32949703 - L1MA2 LINE L1 -7300 265 14 478 236 19 13 chrX 129650581 129650738 -32949192 + L1ME1 LINE L1 5043 5200 -946 712 157 0 45 chrX 129650745 129650879 -32949051 + FRAM SINE Alu 41 168 -8 2437 247 40 32 chrX 129650882 129651472 -32948458 + L1ME1 LINE L1 5206 5799 -367 2174 119 0 0 chrX 129651472 129651766 -32948164 + AluSx SINE Alu 1 294 -18 2437 247 40 32 chrX 129651766 129652076 -32947854 + L1ME1 LINE L1 5799 6105 -61 2284 256 67 101 chrX 129652088 129653261 -32946669 + L1 LINE L1 44 1367 -5482 * 11226 214 32 31 chrX 129653260 129656330 -32943600 + L1 LINE L1 3031 6105 -743 186 43 0 0 chrX 129657019 129657042 -32942888 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 196 219 14 14 chrX 129657313 129657386 -32942544 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 295 309 73 16 chrX 129657620 129657743 -32942187 + L2 LINE L2 3183 3312 -1 240 308 77 23 chrX 129657771 129657901 -32942029 + L2 LINE L2 3141 3277 -36 22 0 0 0 chrX 129657973 129657995 -32941935 + AT_rich Low_complexity Low_complexity 1 22 0 546 82 41 0 chrX 129658088 129658185 -32941745 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 1664 229 78 18 chrX 129658194 129658631 -32941299 - MLT2B1 LTR ERVL -55 465 3 382 269 108 0 chrX 129658639 129658769 -32941161 - MIR SINE MIR -3 259 116 230 327 65 0 chrX 129658887 129658994 -32940936 + L2 LINE L2 3196 3309 -4 2348 161 21 23 chrX 129659049 129659484 -32940446 + Tigger2a DNA MER2_type 1 434 0 275 312 119 0 chrX 129659538 129659647 -32940283 - L2 LINE L2 -8 3305 3184 219 69 0 0 chrX 129661448 129661477 -32938453 + (TG)n Simple_repeat Simple_repeat 2 30 0 449 303 126 6 chrX 129661477 129661652 -32938278 - MIR SINE MIR -10 252 57 354 295 60 7 chrX 129662210 129662411 -32937519 - MIR SINE MIR -3 259 6 415 253 17 0 chrX 129662411 129662585 -32937345 + (TA)n Simple_repeat Simple_repeat 2 178 0 1157 183 9 0 chrX 129662602 129662826 -32937104 - L1PA16 LINE L1 0 6166 5941 1438 247 19 8 chrX 129663148 129663517 -32936413 - MLT1A2 LTR MaLR 0 374 2 222 304 87 22 chrX 129663994 129664086 -32935844 - L2 LINE L2 -21 3292 3195 187 326 31 10 chrX 129664432 129664530 -32935400 + MIR SINE MIR 89 188 -74 889 178 13 13 chrX 129664532 129664684 -32935246 + AluJb SINE Alu 136 287 -25 186 103 0 0 chrX 129664768 129664797 -32935133 + (CAT)n Simple_repeat Simple_repeat 2 30 0 377 325 73 24 chrX 129665503 129665709 -32934221 - MIR SINE MIR 0 262 47 2871 7 0 0 chrX 129666028 129666338 -32933592 - AluY SINE Alu -1 310 1 268 389 43 0 chrX 129666343 129666482 -32933448 + L2 LINE L2 3164 3308 -5 1615 184 3 10 chrX 129667093 129667387 -32932543 + MLT2B3 LTR ERVL 1 292 -262 8644 184 19 6 chrX 129667387 129669973 -32929957 + ERVL-B3 LTR ERVL 3069 5760 -4 2884 196 11 37 chrX 129669973 129670540 -32929390 + MLT2B3 LTR ERVL 1 552 -2 1658 189 0 30 chrX 129671059 129671361 -32928569 + AluJo SINE Alu 1 293 -19 252 143 43 0 chrX 129671415 129671485 -32928445 + (TA)n Simple_repeat Simple_repeat 1 73 0 23 54 0 0 chrX 129671769 129671806 -32928124 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chrX 129672523 129672554 -32927376 + AT_rich Low_complexity Low_complexity 1 31 0 999 48 8 0 chrX 129673167 129673293 -32926637 - L1PA3 LINE L1 -5 6150 6024 364 293 109 34 chrX 129673577 129673816 -32926114 + L2 LINE L2 2097 2353 -961 207 100 0 0 chrX 129674009 129674039 -32925891 + (T)n Simple_repeat Simple_repeat 1 30 0 265 308 113 15 chrX 129674051 129674184 -32925746 + MIR3 SINE MIR 48 193 -15 2033 248 89 35 chrX 129674290 129676057 -32923873 - L1MB8 LINE L1 -5 6173 4238 180 111 0 0 chrX 129676057 129676084 -32923846 + (TA)n Simple_repeat Simple_repeat 2 28 0 446 283 90 29 chrX 129676099 129676545 -32923385 - L1MB8 LINE L1 -2739 3407 2935 * 21768 184 21 24 chrX 129676541 129677151 -32922779 + L1PA11 LINE L1 686 1296 -6316 2212 112 7 0 chrX 129677151 129677456 -32922474 + AluSp SINE Alu 1 307 -6 21768 184 21 24 chrX 129677456 129682945 -32916985 + L1PA11 LINE L1 1296 7612 0 3100 259 76 39 chrX 129682935 129683324 -32916606 + L1MDa LINE L1 2471 2844 -3696 * 2286 87 7 0 chrX 129683324 129683622 -32916308 + AluSp SINE Alu 1 300 -13 3100 259 76 39 chrX 129683622 129684256 -32915674 + L1MDa LINE L1 2844 3453 -3087 7601 25 3 0 chrX 129684256 129685351 -32914579 + L1PA4 LINE L1 5056 6153 -2 3100 259 76 39 chrX 129685351 129685893 -32914037 + L1MDa LINE L1 3453 4084 -2456 476 210 20 0 chrX 129685954 129686054 -32913876 - L1MC2 LINE L1 -6 6338 6237 1414 292 62 52 chrX 129686079 129686815 -32913115 - L1MEc LINE L1 -5618 778 35 627 203 8 0 chrX 129687653 129687771 -32912159 + FLAM_C SINE Alu 1 119 -14 233 188 31 0 chrX 129687771 129687835 -32912095 + (TA)n Simple_repeat Simple_repeat 1 66 0 259 101 65 50 chrX 129687869 129688008 -32911922 + (TTATA)n Simple_repeat Simple_repeat 4 144 0 220 120 92 7 chrX 129688017 129688159 -32911771 + (TA)n Simple_repeat Simple_repeat 1 154 0 433 141 64 15 chrX 129688176 129688653 -32911277 + (TA)n Simple_repeat Simple_repeat 1 500 0 183 189 29 40 chrX 129688669 129688844 -32911086 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 259 153 73 7 chrX 129688883 129689020 -32910910 + (TA)n Simple_repeat Simple_repeat 2 147 0 370 141 0 16 chrX 129689033 129689097 -32910833 + AluJ/FRAM SINE Alu 226 288 -14 383 83 17 0 chrX 129689451 129689511 -32910419 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 297 346 7 44 chrX 129689535 129689671 -32910259 - MIR SINE MIR -75 187 57 5521 167 35 15 chrX 129689687 129691519 -32908411 + L1MA4A LINE L1 4451 6300 -3 30 0 0 0 chrX 129691663 129691693 -32908237 + AT_rich Low_complexity Low_complexity 1 30 0 362 282 30 94 chrX 129692597 129692799 -32907131 - MLT1L LTR MaLR -403 212 24 190 397 40 40 chrX 129692862 129692988 -32906942 + MIR3 SINE MIR 4 129 -79 27 0 0 0 chrX 129693094 129693121 -32906809 + AT_rich Low_complexity Low_complexity 1 27 0 208 239 0 0 chrX 129693832 129693878 -32906052 + CT-rich Low_complexity Low_complexity 2 47 0 1447 223 49 19 chrX 129694666 129695034 -32904896 - MLT1B LTR MaLR -2 388 10 11853 184 40 28 chrX 129695768 129696684 -32903246 - L1MA2 LINE L1 -1 7722 6819 2263 151 33 28 chrX 129696684 129697109 -32902821 - MSTA LTR MaLR -1 427 1 11853 184 40 28 chrX 129697109 129700935 -32898995 - L1MA2 LINE L1 -904 6819 2898 344 70 0 18 chrX 129700935 129700992 -32898938 + (TA)n Simple_repeat Simple_repeat 2 57 0 11853 184 40 28 chrX 129700992 129701229 -32898701 - L1MA2 LINE L1 -4825 2898 2665 6245 183 91 108 chrX 129701230 129702997 -32896933 - L1MA2 LINE L1 -5404 2161 425 1738 193 15 62 chrX 129703272 129703739 -32896191 - MER65A LTR ERV1 0 445 1 2313 135 89 5 chrX 129703759 129704152 -32895778 + MSTA LTR MaLR 1 426 -2 6237 197 103 50 chrX 129704154 129705654 -32894276 + MSTA-int LTR MaLR 1 1580 0 2298 153 52 5 chrX 129705656 129706061 -32893869 + MSTA LTR MaLR 3 426 -2 757 298 98 40 chrX 129706338 129706808 -32893122 + MLT1J LTR MaLR 9 505 -6 246 302 0 0 chrX 129706814 129706877 -32893053 + L2 LINE L2 3238 3300 -13 313 297 52 26 chrX 129707908 129708100 -32891830 - L1MB8 LINE L1 -10 6168 5972 308 152 13 0 chrX 129708147 129708226 -32891704 + L1MA4A LINE L1 6224 6303 0 276 30 0 0 chrX 129708352 129708385 -32891545 + (CA)n Simple_repeat Simple_repeat 2 34 0 2551 153 67 4 chrX 129708449 129708958 -32890972 - L1MA4A LINE L1 -11 6292 5752 30 45 0 0 chrX 129709182 129709226 -32890704 + AT_rich Low_complexity Low_complexity 1 44 0 213 176 39 0 chrX 129709907 129709958 -32889972 + GA-rich Low_complexity Low_complexity 4 56 0 1424 167 40 4 chrX 129709962 129710213 -32889717 + MSTA LTR MaLR 167 426 -2 2060 98 0 14 chrX 129711024 129711342 -32888588 + AluSx SINE Alu 1 314 0 25 31 0 0 chrX 129711519 129711551 -32888379 + AT_rich Low_complexity Low_complexity 1 32 0 1082 284 22 19 chrX 129711690 129712003 -32887927 - LTR16A LTR ERVL -30 420 107 2518 47 0 3 chrX 129713042 129713340 -32886590 - AluY SINE Alu -12 299 3 191 309 16 121 chrX 129713407 129713663 -32886267 + L2 LINE L2 3036 3264 -49 471 60 0 0 chrX 129713672 129713739 -32886191 + (GA)n Simple_repeat Simple_repeat 2 68 0 213 150 25 0 chrX 129713741 129713781 -32886149 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 701 216 58 0 chrX 129713790 129713961 -32885969 - MER95 LTR ERV -10 421 241 5553 166 13 5 chrX 129713975 129714329 -32885601 - L1PB1 LINE L1 -1 6150 5801 204 40 0 0 chrX 129714329 129714354 -32885576 + (TA)n Simple_repeat Simple_repeat 2 26 0 5553 166 13 5 chrX 129714354 129715680 -32884250 - L1PB1 LINE L1 -350 5801 4456 855 215 78 0 chrX 129715681 129715886 -32884044 - MER95 LTR ERV -186 245 25 240 64 0 0 chrX 129715883 129715930 -32884000 + LTR66 LTR ERVL 392 438 -172 * 228 87 0 0 chrX 129715893 129715939 -32883991 - LTR66 LTR ERVL -171 439 394 * 285 29 0 0 chrX 129715939 129715973 -32883957 + (CA)n Simple_repeat Simple_repeat 2 35 0 294 196 0 0 chrX 129715974 129716071 -32883859 + (TA)n Simple_repeat Simple_repeat 2 98 0 2039 243 38 26 chrX 129716211 129716709 -32883221 + MLT2B3 LTR ERVL 1 504 -50 433 0 35 0 chrX 129716712 129716769 -32883161 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 334 263 22 50 chrX 129716852 129717031 -32882899 - L1MC5 LINE L1 -24 7937 7764 27 0 0 0 chrX 129717218 129717245 -32882685 + AT_rich Low_complexity Low_complexity 1 27 0 6018 164 21 0 chrX 129717248 129718522 -32881408 - L1MA2 LINE L1 -1 6303 5003 993 144 187 104 chrX 129718522 129718708 -32881222 - MSTA LTR MaLR 0 428 259 333 0 0 0 chrX 129718708 129718745 -32881185 + (GA)n Simple_repeat Simple_repeat 1 37 0 993 144 187 104 chrX 129718745 129718836 -32881094 - MSTA LTR MaLR -169 259 75 5658 134 15 4 chrX 129718842 129720489 -32879441 - L1PA10 LINE L1 -145 6023 4364 844 119 244 0 chrX 129720492 129720652 -32879278 - MSTA LTR MaLR -229 199 1 1802 189 43 8 chrX 129720652 129720863 -32879067 - L1MA2 LINE L1 -1139 5007 4805 204 97 0 0 chrX 129720863 129720894 -32879036 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1802 189 43 8 chrX 129720894 129721079 -32878851 - L1MA2 LINE L1 -1341 4805 4597 349 178 93 84 chrX 129721087 129721194 -32878736 - Tigger2a DNA MER2_type -317 117 10 1475 208 13 0 chrX 129721220 129721528 -32878402 + Tigger2a DNA MER2_type 133 444 0 22 0 0 0 chrX 129721528 129721550 -32878380 + AT_rich Low_complexity Low_complexity 1 22 0 739 268 6 0 chrX 129723266 129723423 -32876507 + MER70B LTR ERVL 1 158 -420 375 219 0 0 chrX 129723437 129723519 -32876411 - L1MA2 LINE L1 -244 6060 5979 1522 286 16 0 chrX 129723519 129723897 -32876033 + MER70A LTR ERVL 89 472 0 342 328 8 0 chrX 129724791 129724922 -32875008 + MIR SINE MIR 131 262 0 230 64 21 0 chrX 129725107 129725154 -32874776 - LTR66 LTR ERVL -169 441 394 233 218 32 16 chrX 129725160 129725283 -32874647 + L1MC3 LINE L1 6589 6646 -1139 572 152 36 0 chrX 129725295 129725407 -32874523 - L1PA16 LINE L1 -9 6157 6042 291 319 153 31 chrX 129725414 129725668 -32874262 - L2 LINE L2 -1311 2003 1719 205 283 0 0 chrX 129725690 129725750 -32874180 + T-rich Low_complexity Low_complexity 1 60 0 3625 168 9 5 chrX 129725752 129726413 -32873517 - L1MA5 LINE L1 0 6300 5637 709 367 64 43 chrX 129726413 129727425 -32872505 - L2 LINE L2 -1605 1709 677 1605 190 36 33 chrX 129727467 129727938 -32871992 - MER74A LTR ERVL 0 558 1 2420 59 3 0 chrX 129727956 129728246 -32871684 + AluSp SINE Alu 1 291 -22 289 377 45 42 chrX 129728269 129728603 -32871327 - L2 LINE L2 -2728 586 252 213 94 0 0 chrX 129729588 129729620 -32870310 + (GA)n Simple_repeat Simple_repeat 1 32 0 389 250 156 0 chrX 129730072 129730232 -32869698 - MER53 DNA DNA -4 185 1 24 32 0 0 chrX 129730509 129730540 -32869390 + AT_rich Low_complexity Low_complexity 1 31 0 3787 135 13 35 chrX 129730877 129731557 -32868373 - L1MA2 LINE L1 -20 6284 5620 22 35 0 0 chrX 129732042 129732071 -32867859 + AT_rich Low_complexity Low_complexity 1 29 0 583 241 95 78 chrX 129934144 129934439 -32665491 + MLT1H LTR MaLR 1 300 -249 1213 151 0 10 chrX 129934630 129934836 -32665094 - MLT1B LTR MaLR 0 390 187 30385 72 11 18 chrX 129934944 129938963 -32660967 - HERVL-A1 LTR ERVL -1633 4021 28 241 111 0 56 chrX 129938963 129939017 -32660913 - MLT2A1 LTR ERVL -4 449 399 198 0 0 0 chrX 129939030 129939052 -32660878 + (TA)n Simple_repeat Simple_repeat 1 22 0 2817 100 30 5 chrX 129939075 129939474 -32660456 - MLT2A1 LTR ERVL -35 409 1 3097 103 2 48 chrX 129939474 129939969 -32659961 - L1PB1 LINE L1 -238 5913 5442 * 7817 204 36 10 chrX 129939968 129941790 -32658140 + L1 LINE L1 3455 5324 -822 276 109 18 36 chrX 129941893 129941948 -32657982 + L1P LINE L1 5364 5417 -734 459 297 46 12 chrX 129942082 129942320 -32657610 - L1MC/D LINE L1 -385 5736 5491 855 205 95 32 chrX 129942479 129942669 -32657261 - MER58A DNA MER1_type -20 204 3 542 358 69 8 chrX 129945306 129945552 -32654378 + MIR SINE MIR 2 262 0 236 100 25 0 chrX 129946327 129946367 -32653563 + (TC)n Simple_repeat Simple_repeat 2 42 0 186 43 0 0 chrX 129946367 129946390 -32653540 + (CA)n Simple_repeat Simple_repeat 1 23 0 360 286 82 10 chrX 129946491 129946589 -32653341 - MER5B DNA MER1_type -73 105 1 843 156 0 0 chrX 129947215 129947343 -32652587 + FLAM_C SINE Alu 1 128 -5 589 264 141 6 chrX 129947712 129947875 -32652055 + MER5A DNA MER1_type 2 186 -3 249 291 13 13 chrX 129948220 129948299 -32651631 + L2 LINE L2 2607 2685 -629 694 281 45 113 chrX 129948300 129948565 -32651365 + L2 LINE L2 2820 3033 -280 1973 100 4 0 chrX 129948565 129948824 -32651106 - AluSq SINE Alu -52 261 2 694 281 45 113 chrX 129948824 129949088 -32650842 + L2 LINE L2 3033 3313 0 299 273 71 82 chrX 129949088 129949271 -32650659 + L2 LINE L2 3044 3224 -89 * 628 271 43 19 chrX 129949262 129949472 -32650458 + MIR SINE MIR 27 241 -21 250 301 27 0 chrX 129949512 129949585 -32650345 + L2 LINE L2 3231 3305 -8 21 36 0 0 chrX 129949989 129950017 -32649913 + AT_rich Low_complexity Low_complexity 1 28 0 276 276 118 0 chrX 129950963 129951039 -32648891 + L2 LINE L2 3187 3271 -1 3064 211 46 24 chrX 129952176 129952895 -32647035 + L1M1 LINE L1 3 737 -6828 2353 98 23 0 chrX 129952898 129953245 -32646685 + L1MA1 LINE L1 5946 6300 -2 2585 153 29 17 chrX 129953700 129954217 -32645713 - L1MA9 LINE L1 0 6312 5790 6268 203 25 19 chrX 129954230 129955671 -32644259 - L1MA9 LINE L1 -958 5188 3736 225 0 0 0 chrX 129955671 129955696 -32644234 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6268 203 25 19 chrX 129955696 129955766 -32644164 - L1MA9 LINE L1 -2410 3736 3668 11492 37 3 8 chrX 129955879 129958048 -32641882 + L1PA2 LINE L1 3991 6155 0 273 326 23 0 chrX 129958615 129958701 -32641229 - MIR3 SINE MIR -54 154 67 326 245 29 0 chrX 129959187 129959289 -32640641 - L1ME LINE L1 -442 5679 5575 345 264 115 35 chrX 129959292 129959466 -32640464 - L1ME LINE L1 -580 5541 5354 318 289 23 23 chrX 129961180 129961308 -32638622 - HAL1b LINE L1 -785 563 436 650 296 29 12 chrX 129961588 129961817 -32638113 + MIR SINE MIR 30 260 -2 455 321 23 15 chrX 129962654 129962785 -32637145 - L2 LINE L2 -4 3268 3137 284 336 13 13 chrX 129962834 129962983 -32636947 + GA-rich Low_complexity Low_complexity 3 151 0 189 0 0 0 chrX 129963196 129963217 -32636713 + (TG)n Simple_repeat Simple_repeat 2 22 0 636 279 35 10 chrX 129963894 129964091 -32635839 + MIR SINE MIR 50 251 -11 396 123 0 0 chrX 129964299 129964356 -32635574 + L1PA10 LINE L1 6097 6153 -15 28 61 0 0 chrX 129964507 129964556 -32635374 + AT_rich Low_complexity Low_complexity 1 49 0 1324 55 0 0 chrX 129964601 129964765 -32635165 - L1PA3 LINE L1 -3 6152 5989 373 286 141 21 chrX 129965439 129965631 -32634299 - MIR SINE MIR -1 261 47 321 26 0 0 chrX 129966121 129966159 -32633771 + (TG)n Simple_repeat Simple_repeat 2 39 0 348 264 83 8 chrX 129966231 129966352 -32633578 + MIR SINE MIR 58 187 -75 339 347 32 32 chrX 129966740 129966864 -32633066 - L2 LINE L2 0 3272 3149 200 322 76 34 chrX 129967421 129967539 -32632391 + MIR3 SINE MIR 6 128 -80 226 275 62 12 chrX 129968081 129968161 -32631769 - MIR SINE MIR -102 160 77 432 279 16 0 chrX 129968488 129968617 -32631313 - MER103 DNA DNA -5 161 31 1483 200 3 39 chrX 129968779 129968995 -32630935 + L1PB4 LINE L1 5831 6032 -124 2104 208 65 25 chrX 129968995 129969562 -32630368 + LTR49 LTR ERV1 3 592 -3 1483 200 3 39 chrX 129969562 129969680 -32630250 + L1PB4 LINE L1 6032 6153 -3 711 109 16 55 chrX 129969847 129969975 -32629955 - AluSg/x SINE Alu -17 295 173 378 319 40 137 chrX 129970027 129970422 -32629508 + L2 LINE L2 2916 3272 0 1969 104 4 11 chrX 129971782 129972052 -32627878 + AluSg SINE Alu 43 310 0 827 249 159 0 chrX 129972423 129972624 -32627306 - MIR SINE MIR -21 241 9 286 288 71 35 chrX 129974423 129974621 -32625309 + MIR SINE MIR 2 206 -56 2942 87 20 2 chrX 129975072 129975465 -32624465 + MLT2A1 LTR ERVL 1 400 -44 291 54 0 0 chrX 129975544 129975581 -32624349 + (TA)n Simple_repeat Simple_repeat 2 38 0 1053 324 122 27 chrX 129975681 129976659 -32623271 - L2 LINE L2 0 3313 2245 1686 248 118 45 chrX 129977195 129978147 -32621783 + L1MC4 LINE L1 6740 7760 -282 604 216 22 14 chrX 129978147 129978286 -32621644 + MLT1E LTR MaLR 24 163 -430 465 285 28 21 chrX 129978318 129978462 -32621468 - MIR SINE MIR -105 157 13 1037 199 0 0 chrX 129978555 129978741 -32621189 + MER5A DNA MER1_type 1 186 -3 13223 200 67 10 chrX 129979024 129984521 -32615409 - L1PBa LINE L1 -1036 5826 6 13935 199 47 27 chrX 129984542 129985092 -32614838 - L1MA7 LINE L1 -1 6526 5988 2848 7 0 0 chrX 129985092 129985400 -32614530 - AluYb8 SINE Alu -10 308 1 13935 199 47 27 chrX 129985400 129989581 -32610349 - L1MA7 LINE L1 -539 5988 1658 7107 43 1 36 chrX 129989581 129991192 -32608738 - L1PA5 LINE L1 -7 6147 4558 13935 199 47 27 chrX 129991192 129991691 -32608239 - L1MA7 LINE L1 -4869 1658 1170 5278 123 5 0 chrX 129991697 129992353 -32607577 - L1PA13 LINE L1 -5 6158 5480 252 0 0 0 chrX 129992353 129992381 -32607549 + (TA)n Simple_repeat Simple_repeat 2 29 0 5278 123 5 0 chrX 129992381 129992856 -32607074 - L1PA13 LINE L1 -683 5480 5009 2651 300 24 12 chrX 129992870 129993629 -32606301 - L1M3de LINE L1 -4958 1695 928 359 260 21 21 chrX 129993752 129993848 -32606082 - L1M3de LINE L1 -6288 365 270 339 269 19 48 chrX 129994064 129994168 -32605762 - L1M3de LINE L1 -6287 366 266 387 226 24 24 chrX 129994174 129994258 -32605672 - L1M3de LINE L1 -6287 366 283 299 276 62 9 chrX 129994281 129994369 -32605561 - L1M3de LINE L1 -5638 1015 276 470 354 22 11 chrX 129994380 129994561 -32605369 - L1M3de LINE L1 -6283 370 188 328 310 78 42 chrX 129995502 129995644 -32604286 - MIR SINE MIR -105 157 11 543 294 41 50 chrX 129995674 129995892 -32604038 + MIR SINE MIR 13 228 -34 257 377 40 23 chrX 129996741 129996916 -32603014 + MER5B DNA MER1_type 1 178 0 215 272 48 87 chrX 129996928 129997031 -32602899 + MER5A DNA MER1_type 36 134 -55 231 281 39 85 chrX 129998221 129998374 -32601556 - MIR SINE MIR -43 219 74 284 217 36 36 chrX 129998504 129998587 -32601343 + MLT1L LTR MaLR 2 84 -531 603 306 57 73 chrX 129998641 129998824 -32601106 + MLT1J2 LTR MaLR 29 205 -245 776 152 0 0 chrX 129998824 129998962 -32600968 - L1MA4 LINE L1 -6 6294 6157 603 306 57 73 chrX 129998962 129999147 -32600783 + MLT1J2 LTR MaLR 205 391 -59 529 256 135 0 chrX 129999768 129999924 -32600006 + MER5A DNA MER1_type 3 179 -10 324 214 0 14 chrX 129999997 130000067 -32599863 - MER5B DNA MER1_type -1 177 109 309 206 31 0 chrX 130001637 130001734 -32598196 + (TA)n Simple_repeat Simple_repeat 1 100 0 323 298 0 48 chrX 130001735 130001859 -32598071 - L1MC4 LINE L1 -1337 6705 6588 229 82 122 0 chrX 130001948 130001997 -32597933 + L1MCa LINE L1 2006 2060 -4366 611 308 67 12 chrX 130002400 130002838 -32597092 - MLT1J LTR MaLR -5 506 6 4918 176 58 6 chrX 130003035 130003926 -32596004 + L1MA2 LINE L1 15 952 -6613 1626 176 49 35 chrX 130003926 130004296 -32595634 + THE1C LTR MaLR 1 375 0 1972 146 6 0 chrX 130004298 130004627 -32595303 + THE1C-int LTR MaLR 3 333 -1247 1157 118 0 0 chrX 130004637 130004815 -32595115 + L1MA1 LINE L1 6039 6216 -86 6375 144 16 14 chrX 130004835 130006827 -32593103 + L1MA2 LINE L1 5722 7723 0 803 254 19 15 chrX 130006952 130007157 -32592773 + MER58A DNA MER1_type 4 209 -15 268 197 121 0 chrX 130008232 130008298 -32591632 + L2 LINE L2 3147 3220 -52 238 248 46 46 chrX 130009258 130009367 -32590563 + MLT1L LTR MaLR 507 615 0 180 393 49 31 chrX 130011347 130011510 -32588420 - L2 LINE L2 0 3272 3107 187 245 19 38 chrX 130011691 130011744 -32588186 + MIR SINE MIR 100 151 -111 306 106 0 0 chrX 130012268 130012315 -32587615 + (CA)n Simple_repeat Simple_repeat 2 48 0 569 226 71 77 chrX 130012333 130012501 -32587429 + MER8 DNA MER2_type 10 176 -63 370 197 14 0 chrX 130012535 130012606 -32587324 - Tigger2 DNA MER2_type -2645 73 2 909 255 85 53 chrX 130013102 130013312 -32586618 - MSTD LTR MaLR 0 396 194 405 0 0 0 chrX 130013312 130013357 -32586573 + (TA)n Simple_repeat Simple_repeat 2 46 0 * 441 0 0 0 chrX 130013356 130013405 -32586525 + (GA)n Simple_repeat Simple_repeat 2 50 0 909 255 85 53 chrX 130013357 130013570 -32586360 - MSTD LTR MaLR -202 194 9 5888 250 57 36 chrX 130013585 130015282 -32584648 - MSTD-int LTR MaLR -2 1733 2 702 250 17 17 chrX 130015285 130015461 -32584469 - MSTD LTR MaLR -1 395 220 240 35 0 0 chrX 130015463 130015492 -32584438 + (GA)n Simple_repeat Simple_repeat 2 30 0 341 235 5 11 chrX 130015499 130015586 -32584344 - MSTD LTR MaLR -221 175 88 6638 57 17 12 chrX 130015587 130017264 -32582666 - L1PA7 LINE L1 -1 6153 4471 9040 80 5 13 chrX 130017264 130018548 -32581382 + L1PA7 LINE L1 3191 4463 -1683 230 266 0 16 chrX 130018548 130018612 -32581318 - MSTD LTR MaLR -332 96 34 2623 83 19 11 chrX 130022926 130023298 -32576632 + THE1C LTR MaLR 1 375 0 352 339 16 16 chrX 130023337 130023464 -32576466 + MIR SINE MIR 19 145 -63 22 35 0 0 chrX 130024359 130024388 -32575542 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 130024469 130024498 -32575432 + AT_rich Low_complexity Low_complexity 1 29 0 2366 110 0 0 chrX 130024634 130024943 -32574987 + AluSc SINE Alu 1 309 0 3890 215 30 34 chrX 130025046 130025208 -32574722 - L1M4 LINE L1 -5587 955 794 393 22 0 0 chrX 130025208 130025254 -32574676 + (TG)n Simple_repeat Simple_repeat 2 47 0 3890 215 30 34 chrX 130025254 130026050 -32573880 - L1M4 LINE L1 -5748 794 1 1270 189 90 22 chrX 130026578 130026900 -32573030 - MER2 DNA MER2_type 0 344 1 310 301 53 30 chrX 130027169 130027302 -32572628 - L1ME LINE L1 -422 5699 5564 650 183 14 21 chrX 130027485 130027627 -32572303 + L1PB4 LINE L1 6014 6154 -2 328 367 14 0 chrX 130028968 130029115 -32570815 - L2 LINE L2 -657 2657 2509 381 22 0 0 chrX 130029116 130029162 -32570768 + (TG)n Simple_repeat Simple_repeat 2 47 0 2151 140 75 39 chrX 130029638 130030075 -32569855 - MSTA-int LTR MaLR -1198 453 1 2051 165 70 5 chrX 130030077 130030476 -32569454 - MSTA LTR MaLR -3 425 1 262 356 0 50 chrX 130030538 130030639 -32569291 - L2 LINE L2 -22 3250 3155 416 304 154 45 chrX 130032835 130033055 -32566875 - MIR SINE MIR -6 256 13 10414 229 31 19 chrX 130035803 130038597 -32561333 + L1PA16 LINE L1 2687 5446 -1423 1903 88 14 39 chrX 130038597 130038881 -32561049 + AluY SINE Alu 1 277 -34 1840 91 0 20 chrX 130038879 130039132 -32560798 + AluY SINE Alu 64 311 0 * 10414 229 31 19 chrX 130038881 130039624 -32560306 + L1PA16 LINE L1 5446 6054 -815 1828 90 0 56 chrX 130039624 130039892 -32560038 + AluSc SINE Alu 36 288 -21 10414 229 31 19 chrX 130039892 130040700 -32559230 + L1PA16 LINE L1 6054 6851 -18 31 26 0 0 chrX 130040704 130040742 -32559188 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chrX 130042510 130042531 -32557399 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chrX 130043427 130043470 -32556460 + (CA)n Simple_repeat Simple_repeat 1 43 0 393 321 15 23 chrX 130044811 130044942 -32554988 + L2 LINE L2 3142 3271 -1 24 67 0 0 chrX 130044975 130045020 -32554910 + AT_rich Low_complexity Low_complexity 1 45 0 528 245 145 25 chrX 130045125 130045284 -32554646 - MER5A DNA MER1_type -3 186 9 186 312 57 89 chrX 130045277 130045434 -32554496 + MER5A DNA MER1_type 23 174 -15 * 227 343 0 0 chrX 130046421 130046491 -32553439 + MER117 DNA MER1_type 19 88 -109 427 313 176 6 chrX 130046585 130046761 -32553169 + MIR SINE MIR 20 225 -37 201 176 0 0 chrX 130047025 130047059 -32552871 + A-rich Low_complexity Low_complexity 1 34 0 417 261 93 56 chrX 130047119 130047280 -32552650 + MIR SINE MIR 91 257 -5 344 245 0 10 chrX 130047356 130047458 -32552472 + CT-rich Low_complexity Low_complexity 4 104 0 1299 133 88 11 chrX 130048441 130048704 -32551226 - L1MA4 LINE L1 -4 6296 6014 338 213 67 0 chrX 130050398 130050473 -32549457 + MIR SINE MIR 181 260 -2 5812 149 8 17 chrX 130050789 130052345 -32547585 - L1PB1 LINE L1 0 6151 4614 834 223 5 0 chrX 130052340 130052546 -32547384 + L1PB1 LINE L1 4402 4608 -1538 * 1218 217 0 11 chrX 130052606 130052869 -32547061 - L1PB4 LINE L1 0 6156 5897 306 315 47 24 chrX 130054756 130054883 -32545047 - L2 LINE L2 -4 3309 3180 23 33 0 0 chrX 130054999 130055029 -32544901 + AT_rich Low_complexity Low_complexity 1 30 0 1979 138 46 30 chrX 130055828 130056197 -32543733 + THE1C LTR MaLR 1 375 0 9476 118 52 16 chrX 130056197 130057721 -32542209 + THE1C-int LTR MaLR 1 1580 0 1860 160 41 30 chrX 130057723 130058092 -32541838 + THE1C LTR MaLR 3 375 0 191 265 41 0 chrX 130058883 130058932 -32540998 - L3 LINE CR1 -587 990 940 189 0 0 0 chrX 130059500 130059521 -32540409 + (TGG)n Simple_repeat Simple_repeat 3 23 0 361 123 0 25 chrX 130059853 130059934 -32539996 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 21 71 0 0 chrX 130059943 130059985 -32539945 + AT_rich Low_complexity Low_complexity 1 42 0 604 168 34 73 chrX 130062333 130062512 -32537418 + MER114 LTR ERV 27 198 -450 1367 124 5 0 chrX 130062796 130062981 -32536949 + AluSx SINE Alu 3 188 -124 11219 251 32 15 chrX 130063059 130063513 -32536417 - L1PA16 LINE L1 -10 6859 6415 2205 134 19 16 chrX 130063513 130063887 -32536043 - THE1C LTR MaLR 0 375 1 11219 251 32 15 chrX 130063887 130068547 -32531383 - L1PA16 LINE L1 -454 6415 1669 451 352 63 36 chrX 130068544 130068876 -32531054 - L1PA16 LINE L1 -5400 1439 1099 * 2091 257 24 6 chrX 130068883 130069377 -32530553 - L1PA16 LINE L1 -6265 574 72 503 277 85 73 chrX 130069467 130069878 -32530052 - L1MEc LINE L1 -4357 2039 1624 6046 198 56 32 chrX 130069888 130072233 -32527697 - L1MA5A LINE L1 -6 6291 3878 1359 161 22 5 chrX 130072238 130072565 -32527365 - AluSx SINE Alu 0 386 56 1824 133 63 27 chrX 130072569 130072901 -32527029 - THE1C LTR MaLR -29 346 3 9482 126 5 59 chrX 130072903 130074574 -32525356 - THE1C-int LTR MaLR 0 1580 1 1731 157 60 36 chrX 130074574 130074938 -32524992 - THE1C LTR MaLR 0 375 3 279 222 28 28 chrX 130075166 130075274 -32524656 + L1ME4a LINE L1 5978 6085 -36 746 318 13 21 chrX 130075274 130075507 -32524423 + MIR SINE MIR 2 232 -30 23 86 0 0 chrX 130075551 130075609 -32524321 + AT_rich Low_complexity Low_complexity 1 58 0 11590 169 55 6 chrX 130075732 130080283 -32519647 - L1MA1 LINE L1 -15 7706 338 491 171 45 18 chrX 130080283 130080394 -32519536 - L1MA1 LINE L1 -7436 129 16 2967 198 15 11 chrX 130082218 130082885 -32517045 - L1P LINE L1 -2579 3567 2898 4710 139 43 20 chrX 130082888 130084430 -32515500 + L1PA15 LINE L1 4581 6157 -8 2177 54 3 50 chrX 130084440 130084767 -32515163 + AluY SINE Alu 1 313 0 282 248 228 27 chrX 130085668 130085817 -32514113 + MIR SINE MIR 65 243 -19 303 122 0 0 chrX 130085875 130085924 -32514006 + (TCC)n Simple_repeat Simple_repeat 3 51 0 358 282 53 64 chrX 130086508 130086614 -32513316 - MIR SINE MIR -11 251 145 1656 195 0 14 chrX 130086614 130086911 -32513019 - AluJo SINE Alu -19 293 1 358 282 53 64 chrX 130086911 130087043 -32512887 - MIR SINE MIR -117 145 13 286 258 79 11 chrX 130087060 130087149 -32512781 + MIR3 SINE MIR 63 157 -51 21 36 0 0 chrX 130088339 130088367 -32511563 + AT_rich Low_complexity Low_complexity 1 28 0 278 286 90 15 chrX 130088420 130088553 -32511377 - L1MC4a LINE L1 -318 7490 7348 864 183 150 40 chrX 130088561 130088835 -32511095 - L1MD3 LINE L1 -782 7213 6910 2364 187 49 42 chrX 130088873 130089440 -32510490 - L1MD2 LINE L1 -2 6617 6047 2277 258 48 1 chrX 130089452 130090419 -32509511 - ERVL-B1 LTR ERVL -4646 1118 57 1054 256 42 78 chrX 130090430 130090880 -32509050 - MLT2B1 LTR ERVL -86 434 1 2180 227 43 25 chrX 130090880 130092033 -32507897 - L1MD2 LINE L1 -563 6056 4890 1581 108 0 0 chrX 130092034 130092247 -32507683 + AluSx SINE Alu 1 213 -99 279 0 0 0 chrX 130092286 130092317 -32507613 + (TC)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chrX 130092316 130092347 -32507583 + (TA)n Simple_repeat Simple_repeat 1 31 0 268 278 0 10 chrX 130092357 130092454 -32507476 - L1MD2 LINE L1 -3455 2951 2856 2402 78 3 3 chrX 130092505 130092814 -32507116 + AluSg SINE Alu 1 309 -1 1012 226 84 87 chrX 130092827 130093195 -32506735 - LTR55 LTR ERV -38 510 144 4841 136 8 3 chrX 130093229 130093995 -32505935 - L1PB4 LINE L1 -26 6130 5361 753 160 0 19 chrX 130093994 130094150 -32505780 + L1PB4 LINE L1 5212 5364 -782 * 517 233 41 47 chrX 130094150 130094322 -32505608 - LTR55 LTR ERV -377 171 1 3141 238 79 29 chrX 130094357 130095963 -32503967 - L1MD2 LINE L1 -3583 2823 1124 1337 175 29 19 chrX 130096009 130096877 -32503053 - L1PA16 LINE L1 -20 6146 5164 1773 288 85 19 chrX 130096880 130097553 -32502377 - L1MD2 LINE L1 -5315 1094 378 1216 320 99 35 chrX 130097591 130098184 -32501746 - L1MDb LINE L1 -5770 639 9 1641 263 91 50 chrX 130098186 130099190 -32500740 - L1MC4a LINE L1 -944 6864 5820 22 88 0 0 chrX 130100421 130100478 -32499452 + AT_rich Low_complexity Low_complexity 1 57 0 213 139 0 0 chrX 130100619 130100662 -32499268 + (TA)n Simple_repeat Simple_repeat 2 44 0 228 67 0 0 chrX 130100769 130100799 -32499131 + (GA)n Simple_repeat Simple_repeat 1 30 0 915 248 49 7 chrX 130100837 130101108 -32498822 + MER34 LTR ERV1 11 265 -277 672 214 156 0 chrX 130101135 130101327 -32498603 + MER34 LTR ERV1 321 542 0 246 352 45 11 chrX 130101480 130101568 -32498362 + L2 LINE L2 3172 3262 -10 210 71 0 0 chrX 130101764 130101792 -32498138 + (TA)n Simple_repeat Simple_repeat 1 28 0 2095 119 39 28 chrX 130103183 130103543 -32496387 - THE1B LTR MaLR 0 364 1 2603 126 2 3 chrX 130103678 130104223 -32495707 + HERVH LTR ERV1 4557 5149 -2564 1495 118 0 0 chrX 130104224 130104444 -32495486 + HERVH LTR ERV1 5600 5819 -1894 2328 93 53 13 chrX 130104444 130104819 -32495111 + HERVH LTR ERV1 7324 7713 0 1674 117 6 9 chrX 130104819 130105143 -32494787 + LTR7 LTR ERV1 1 412 -38 219 139 0 0 chrX 130105143 130105179 -32494751 + (A)n Simple_repeat Simple_repeat 1 36 0 1229 188 67 114 chrX 130106198 130106375 -32493555 - L1MC3 LINE L1 -1095 6690 6506 2689 112 3 0 chrX 130106375 130106749 -32493181 - THE1C LTR MaLR 0 375 1 1229 188 67 114 chrX 130106749 130107018 -32492912 - L1MC3 LINE L1 -1279 6506 6265 957 237 93 35 chrX 130107035 130107410 -32492520 - L1M4 LINE L1 -2170 3976 3580 5305 132 14 10 chrX 130107415 130108276 -32491654 - L1PA16 LINE L1 -1 6165 5293 3547 29 0 0 chrX 130108282 130108702 -32491228 - L1PA4 LINE L1 -3 6152 5733 6874 237 16 14 chrX 130108719 130110571 -32489359 - L1 LINE L1 -1905 4241 2386 2323 143 33 6 chrX 130110590 130110942 -32488988 + THE1B LTR MaLR 1 428 0 10196 124 11 27 chrX 130110942 130112547 -32487383 + THE1B-int LTR MaLR 1 1580 0 2017 165 34 0 chrX 130112547 130112899 -32487031 + THE1B LTR MaLR 1 364 0 403 313 35 54 chrX 130113365 130113678 -32486252 - L1MCb LINE L1 -5646 776 470 371 229 51 25 chrX 130113722 130113840 -32486090 + L1MCc LINE L1 1393 1513 -4910 976 316 108 13 chrX 130113973 130114996 -32484934 + L1MCc LINE L1 1031 2177 -4764 379 220 51 25 chrX 130115122 130115240 -32484690 - L1MCb LINE L1 -4910 1513 1393 544 260 35 40 chrX 130115286 130115486 -32484444 - L1MCb LINE L1 -5412 1011 813 283 301 52 40 chrX 130115749 130115963 -32483967 - L1MCb LINE L1 -6056 367 148 1449 253 8 8 chrX 130115963 130116327 -32483603 - MLT1A1 LTR MaLR -1 364 1 283 301 52 40 chrX 130116327 130116384 -32483546 - L1MCb LINE L1 -6275 148 93 3607 225 44 32 chrX 130116465 130117484 -32482446 - L1MD2 LINE L1 -24 6729 5699 2432 138 62 5 chrX 130117503 130117908 -32482022 + MSTA LTR MaLR 1 428 0 3469 282 51 23 chrX 130117928 130119470 -32480460 - L1MD2 LINE L1 -1281 5259 3674 1928 268 50 8 chrX 130119494 130120236 -32479694 - L1MD2 LINE L1 -3139 3401 2629 2382 246 45 25 chrX 130120309 130121144 -32478786 - L1MD2 LINE L1 -4366 2174 1323 1584 317 41 20 chrX 130121140 130121676 -32478254 - L1MD2 LINE L1 -5854 689 143 * 250 309 21 21 chrX 130121726 130121914 -32478016 - L1M4 LINE L1 -1016 5130 4943 419 310 115 17 chrX 130121922 130122292 -32477638 - MLT1J1 LTR MaLR -24 426 2 364 271 102 54 chrX 130122332 130122704 -32477226 - L1M4 LINE L1 -1279 4867 4478 504 326 79 26 chrX 130122720 130122732 -32477198 - L1M4 LINE L1 -1720 4426 4416 1066 270 53 22 chrX 130122732 130122921 -32477009 - MLT1A2 LTR MaLR -4 370 188 372 22 0 0 chrX 130122921 130122966 -32476964 + (GA)n Simple_repeat Simple_repeat 2 46 0 1066 270 53 22 chrX 130122966 130123135 -32476795 - MLT1A2 LTR MaLR -186 188 1 504 326 79 26 chrX 130123135 130123502 -32476428 - L1M4 LINE L1 -1730 4416 4027 463 137 34 26 chrX 130123823 130123940 -32475990 - L1MA8 LINE L1 -1 6290 6173 247 343 25 0 chrX 130123982 130124117 -32475813 - L1ME LINE L1 -567 5603 5465 385 256 65 55 chrX 130124138 130124398 -32475532 - L1 LINE L1 -1128 5018 4747 355 321 57 27 chrX 130124419 130124858 -32475072 - L1 LINE L1 -1748 4398 3947 316 315 56 32 chrX 130124907 130125247 -32474683 - L1 LINE L1 -2290 3856 3509 2044 205 8 5 chrX 130125303 130125794 -32474136 + LTR69 LTR ERVL 1 555 -33 22 0 0 0 chrX 130126004 130126026 -32473904 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 130126045 130126073 -32473857 + AT_rich Low_complexity Low_complexity 1 28 0 1794 115 10 3 chrX 130126073 130126361 -32473569 - L1MA2 LINE L1 -1 6303 6014 450 275 64 44 chrX 130126440 130126800 -32473130 - L1MC5 LINE L1 -283 7678 7312 465 219 12 52 chrX 130126804 130126933 -32472997 - L1MC5 LINE L1 -977 6831 6704 220 225 50 0 chrX 130126945 130127025 -32472905 + (TA)n Simple_repeat Simple_repeat 1 84 0 1233 208 21 0 chrX 130127368 130127657 -32472273 - L1MA5 LINE L1 0 6300 6006 27 29 0 0 chrX 130128096 130128130 -32471800 + AT_rich Low_complexity Low_complexity 1 34 0 2396 217 42 39 chrX 130129324 130129945 -32469985 - L1MD2 LINE L1 0 6242 5620 743 289 44 4 chrX 130129946 130130392 -32469538 - L1MDb LINE L1 -5860 549 7 233 344 33 0 chrX 130131050 130131140 -32468790 - MIR SINE MIR -77 185 93 2391 194 11 7 chrX 130131260 130131713 -32468217 + L1MA5 LINE L1 5516 5970 -330 2240 99 3 10 chrX 130132005 130132317 -32467613 - AluSg SINE Alu 0 310 1 27 62 0 0 chrX 130132911 130132959 -32466971 + AT_rich Low_complexity Low_complexity 1 48 0 285 325 80 35 chrX 130133068 130133407 -32466523 - HAL1b LINE L1 -929 419 66 22 56 0 0 chrX 130133776 130133812 -32466118 + AT_rich Low_complexity Low_complexity 1 36 0 205 204 0 23 chrX 130134488 130134532 -32465398 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 257 197 0 0 chrX 130134867 130134933 -32464997 - L1MD2 LINE L1 -2370 5438 5373 528 176 0 0 chrX 130134974 130135082 -32464848 - L1PB4 LINE L1 -1 6155 6048 301 306 0 41 chrX 130135083 130135204 -32464726 - L1MD2 LINE L1 -2431 5377 5262 4115 181 38 25 chrX 130135288 130136152 -32463778 - L1MB3 LINE L1 -1 6418 5544 9542 166 71 22 chrX 130136155 130138108 -32461822 - L1MB3 LINE L1 -4217 2167 120 443 302 106 13 chrX 130138123 130138297 -32461633 - L1MD2 LINE L1 -2828 3318 3162 2427 87 0 0 chrX 130138297 130138609 -32461321 - AluSx SINE Alu 0 312 1 443 302 106 13 chrX 130138609 130138745 -32461185 - L1MD2 LINE L1 -2984 3162 2979 819 290 103 12 chrX 130138763 130139703 -32460227 - L1ME3A LINE L1 -5 6445 5428 503 283 13 7 chrX 130140330 130140482 -32459448 - L1ME3A LINE L1 -4708 1899 1747 2363 156 26 13 chrX 130140499 130140962 -32458968 - L1MA4 LINE L1 -7 6293 5825 1614 156 23 7 chrX 130140988 130141289 -32458641 - L1MA4 LINE L1 -429 5871 5566 354 236 112 46 chrX 130141346 130141716 -32458214 - L1MEd LINE L1 -4864 1552 1234 338 337 34 23 chrX 130142514 130142689 -32457241 - L3 LINE CR1 -163 1414 1238 929 312 41 32 chrX 130142705 130143167 -32456763 - MLT1J LTR MaLR -30 481 16 207 392 51 0 chrX 130143285 130143364 -32456566 - L2 LINE L2 -21 3251 3169 210 313 25 0 chrX 130143417 130143497 -32456433 - L3 LINE CR1 -573 1004 923 704 97 0 0 chrX 130143501 130143594 -32456336 + L1PA10 LINE L1 6061 6153 -15 369 387 0 8 chrX 130146140 130146264 -32453666 + L2 LINE L2 3137 3259 -13 3767 180 61 4 chrX 130146393 130147187 -32452743 - L1MB1 LINE L1 -136 6053 5219 28 0 0 0 chrX 130147448 130147476 -32452454 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chrX 130148334 130148359 -32451571 + (TA)n Simple_repeat Simple_repeat 1 25 0 2509 182 44 138 chrX 130149687 130150547 -32449383 - L1MB7 LINE L1 -10 6985 6046 5458 107 12 5 chrX 130150547 130151658 -32448272 - L1PA16 LINE L1 -11 6155 5002 3036 50 3 0 chrX 130151658 130152032 -32447898 - L1PA7 LINE L1 -1 6153 5776 2509 182 44 138 chrX 130152032 130152094 -32447836 - L1MB7 LINE L1 -780 6215 6149 4271 278 46 27 chrX 130152099 130153638 -32446292 - L1MB7 LINE L1 -894 6063 4496 441 0 0 0 chrX 130153654 130153703 -32446227 + (TA)n Simple_repeat Simple_repeat 1 49 0 13025 195 21 28 chrX 130153709 130153871 -32446059 - L1PB1 LINE L1 -45 6822 6660 2549 50 0 0 chrX 130153871 130154173 -32445757 + AluY SINE Alu 1 302 -9 13025 195 21 28 chrX 130154173 130154360 -32445570 - L1PB1 LINE L1 -207 6660 6473 315 0 0 0 chrX 130154360 130154395 -32445535 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 13025 195 21 28 chrX 130154395 130156471 -32443459 - L1PB1 LINE L1 -394 6473 4383 2194 125 0 0 chrX 130156471 130156775 -32443155 - AluSq SINE Alu -9 304 1 13025 195 21 28 chrX 130156775 130157482 -32442448 - L1PB1 LINE L1 -2484 4383 3672 5341 57 31 1 chrX 130157482 130158183 -32441747 - LTR30 LTR ERV1 0 722 1 13025 195 21 28 chrX 130158183 130160433 -32439497 - L1PB1 LINE L1 -3195 3672 1265 5136 76 13 1 chrX 130160433 130161147 -32438783 - LTR30 LTR ERV1 0 722 1 13025 195 21 28 chrX 130161147 130161417 -32438513 - L1PB1 LINE L1 -5602 1265 995 760 204 31 31 chrX 130161413 130161609 -32438321 - L1PB1 LINE L1 -6665 198 3 * 2156 276 54 15 chrX 130161623 130162585 -32437345 - L1MB7 LINE L1 -2441 4516 3517 22 0 0 0 chrX 130162585 130162607 -32437323 + AT_rich Low_complexity Low_complexity 1 22 0 5234 143 38 8 chrX 130162673 130163638 -32436292 - L1PA15 LINE L1 0 6165 5175 43029 51 4 1 chrX 130163677 130163736 -32436194 - L1PA5 LINE L1 0 6154 6097 195 42 0 0 chrX 130163736 130163760 -32436170 + (TA)n Simple_repeat Simple_repeat 2 25 0 43029 51 4 1 chrX 130163760 130169832 -32430098 - L1PA5 LINE L1 -57 6097 1 638 226 44 48 chrX 130169835 130170083 -32429847 - L1MB7 LINE L1 -4731 2228 1982 1019 283 17 3 chrX 130170090 130170451 -32429479 - L1MB7 LINE L1 -4985 1870 1505 805 283 49 8 chrX 130170448 130170695 -32429235 - L1MB7 LINE L1 -5636 1223 967 * 278 114 0 89 chrX 130170782 130170861 -32429069 - L1MA7 LINE L1 -6 6285 6214 367 288 18 9 chrX 130170861 130170972 -32428958 - L1MB7 LINE L1 -5885 974 863 565 213 41 0 chrX 130170985 130171107 -32428823 - L1MB7 LINE L1 -6065 794 668 2356 191 25 8 chrX 130171177 130171649 -32428281 + L1PA16 LINE L1 5683 6162 -4 325 339 0 0 chrX 130171673 130171791 -32428139 + MIR SINE MIR 125 242 -20 1482 186 35 58 chrX 130174424 130174823 -32425107 + MLT1B LTR MaLR 1 390 0 266 282 41 77 chrX 130174964 130175159 -32424771 + L1M3d LINE L1 241 428 -5703 414 269 74 27 chrX 130175335 130175670 -32424260 + L1M3d LINE L1 925 1352 -4779 4761 158 9 4 chrX 130175671 130176455 -32423475 + HSMAR2 DNA Mariner 514 1301 -1 5793 242 49 16 chrX 130176455 130178222 -32421708 + L1M3d LINE L1 2496 4327 -1883 306 0 0 0 chrX 130178222 130178256 -32421674 + (CA)n Simple_repeat Simple_repeat 1 34 0 5793 242 49 16 chrX 130178256 130178318 -32421612 + L1M3d LINE L1 4327 4385 -1825 7203 132 55 8 chrX 130178323 130180108 -32419822 - L1PBa LINE L1 -3303 3559 1695 2023 251 49 12 chrX 130180109 130180706 -32419224 + L1M3d LINE L1 4394 5012 -1198 1163 241 19 100 chrX 130180714 130181186 -32418744 - L1 LINE L1 -981 5165 4732 468 217 31 12 chrX 130181157 130181318 -32418612 - L1 LINE L1 -1633 4513 4350 * 10685 212 57 19 chrX 130181373 130184567 -32415363 + L1MA6 LINE L1 3091 6420 -1145 1155 183 0 10 chrX 130184571 130184779 -32415151 + AluJb SINE Alu 87 292 -20 452 235 0 0 chrX 130184780 130184878 -32415052 + L1MA6 LINE L1 6415 6512 -1053 * 20802 173 13 20 chrX 130184872 130191196 -32408734 - L1PA11 LINE L1 -1 7611 2 641 130 126 107 chrX 130191175 130191415 -32408515 + L1MA6 LINE L1 6490 6740 -840 * 1421 162 74 0 chrX 130191415 130191699 -32408231 + L1MA6 LINE L1 7415 7719 0 707 224 0 0 chrX 130191734 130191877 -32408053 - FLAM_C SINE Alu 0 143 1 967 165 0 13 chrX 130192273 130192431 -32407499 + FRAM SINE Alu 18 173 -3 5509 136 18 11 chrX 130192451 130193820 -32406110 - L1PA13 LINE L1 -4 6159 4786 2656 187 78 0 chrX 130194013 130194574 -32405356 - L1MC1 LINE L1 -69 6264 5660 472 234 102 58 chrX 130194579 130194943 -32404987 - L1MDa LINE L1 -4713 1367 988 5111 172 36 13 chrX 130194995 130196421 -32403509 - L1MA6 LINE L1 -3 6297 4837 1884 144 81 32 chrX 130196421 130196768 -32403162 + THE1B LTR MaLR 1 364 0 5111 172 36 13 chrX 130196768 130197068 -32402862 - L1MA6 LINE L1 -1463 4837 4545 381 214 53 15 chrX 130197070 130197201 -32402729 - L1MDa LINE L1 -5073 997 862 1017 362 63 37 chrX 130197279 130198302 -32401628 - HERV16 LTR ERVL -827 4937 3849 512 71 51 0 chrX 130198312 130198410 -32401520 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 1582 216 31 8 chrX 130198586 130198943 -32400987 - MLT1A1 LTR MaLR 0 365 1 2351 328 62 27 chrX 130199259 130200277 -32399653 - HERV16 LTR ERVL -1902 3094 2245 288 0 0 0 chrX 130200277 130200309 -32399621 + (TA)n Simple_repeat Simple_repeat 2 33 0 2351 328 62 27 chrX 130200309 130200743 -32399187 - HERV16 LTR ERVL -2751 2245 1828 1354 314 49 18 chrX 130201456 130202007 -32397923 - HERV16 LTR ERVL -4168 828 261 294 263 50 0 chrX 130202154 130202234 -32397696 - HERV16 LTR ERVL -4912 84 1 772 319 31 63 chrX 130202242 130202699 -32397231 - LTR16A LTR ERVL -8 442 1 186 43 0 0 chrX 130203538 130203561 -32396369 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 971 184 11 0 chrX 130204316 130204490 -32395440 + L1PBa LINE L1 1 176 -6687 1208 240 40 48 chrX 130204609 130205366 -32394564 - L1 LINE L1 -3710 3855 3091 450 217 31 12 chrX 130205421 130205582 -32394348 + L1M4 LINE L1 4350 4513 -1633 * 1064 241 19 100 chrX 130205552 130206020 -32393910 + L1M4 LINE L1 4731 5160 -986 1985 250 49 12 chrX 130206035 130206630 -32393300 - L1 LINE L1 -1200 5906 5290 7186 131 54 8 chrX 130206631 130208417 -32391513 + L1PBa LINE L1 1695 3559 -3303 5644 242 49 16 chrX 130208422 130208484 -32391446 - L1 LINE L1 -1825 5281 5223 342 0 0 0 chrX 130208484 130208522 -32391408 + (TG)n Simple_repeat Simple_repeat 1 38 0 5644 242 49 16 chrX 130208522 130210289 -32389641 - L1 LINE L1 -1883 5223 3392 4733 157 9 4 chrX 130210289 130211071 -32388859 - HSMAR2 DNA Mariner -1 1301 516 245 190 17 0 chrX 130211072 130211130 -32388800 - L1 LINE L1 -4777 2250 2192 396 282 80 30 chrX 130211139 130211401 -32388529 - L1 LINE L1 -4927 2103 1829 260 282 41 77 chrX 130211585 130211780 -32388150 - L1 LINE L1 -5703 1324 1137 1514 186 35 55 chrX 130211921 130212319 -32387611 - MLT1B LTR MaLR 0 390 1 180 0 0 0 chrX 130214103 130214123 -32385807 + (CAA)n Simple_repeat Simple_repeat 2 21 0 316 321 0 0 chrX 130214954 130215066 -32384864 - MIR SINE MIR -26 236 125 2344 191 25 8 chrX 130215090 130215562 -32384368 - L1PA16 LINE L1 -4 6162 5683 564 213 41 0 chrX 130215632 130215754 -32384176 + L1M4b LINE L1 668 794 -6065 362 288 18 9 chrX 130215767 130215878 -32384052 + L1M4b LINE L1 863 974 -5885 268 114 0 89 chrX 130215878 130215957 -32383973 + L1MA7 LINE L1 6214 6285 -6 819 279 49 8 chrX 130216045 130216292 -32383638 + L1M4b LINE L1 967 1223 -5636 * 1002 280 17 3 chrX 130216289 130216650 -32383280 + L1M4b LINE L1 1505 1870 -4985 632 230 44 48 chrX 130216657 130216905 -32383025 + L1M4b LINE L1 1982 2228 -4731 39122 91 4 3 chrX 130216908 130223069 -32376861 + L1PA10 LINE L1 1 6168 0 1185 222 13 3 chrX 130223073 130223384 -32376546 + L1 LINE L1 3443 3756 -2390 2899 198 26 13 chrX 130223485 130226057 -32373873 + L1PB1 LINE L1 1734 4270 -2597 2035 142 10 0 chrX 130226057 130226366 -32373564 + AluSx SINE Alu 1 312 0 2899 198 26 13 chrX 130226366 130228678 -32371252 + L1PB1 LINE L1 4270 6867 0 216 0 0 0 chrX 130229970 130229994 -32369936 + (A)n Simple_repeat Simple_repeat 1 24 0 779 308 32 13 chrX 130229994 130230521 -32369409 + L1MC/D LINE L1 5188 5728 -631 245 250 49 28 chrX 130230636 130230780 -32369150 + Charlie5 DNA MER1_type 2234 2380 -232 310 321 123 28 chrX 130230957 130231169 -32368761 - MIR SINE MIR 0 262 31 1337 243 25 9 chrX 130231276 130231597 -32368333 + L1MCa LINE L1 4 329 -6097 241 204 20 31 chrX 130231617 130231676 -32368254 + T-rich Low_complexity Low_complexity 6 65 -37 2879 144 6 6 chrX 130231676 130232149 -32367781 - L1PB3 LINE L1 -7 6147 5675 241 204 20 31 chrX 130232149 130232187 -32367743 + T-rich Low_complexity Low_complexity 65 102 0 25482 142 9 16 chrX 130232191 130237518 -32362412 - L1PA8 LINE L1 -3 6169 882 11157 205 25 17 chrX 130237509 130239591 -32360339 - L1PA13 LINE L1 -4688 2099 2 * 4022 177 108 83 chrX 130239633 130240970 -32358960 - MER57-int LTR ERV1 -2760 4777 3408 5166 189 13 10 chrX 130241085 130243102 -32356828 - L1PB3 LINE L1 -7 6147 4130 1897 169 81 54 chrX 130243115 130243640 -32356290 + MER4-int LTR ERV1 94 686 -5912 285 29 0 0 chrX 130243707 130243741 -32356189 + (A)n Simple_repeat Simple_repeat 1 34 0 1087 229 75 64 chrX 130243779 130243948 -32355982 + MER4-int LTR ERV1 1845 2011 -4320 354 47 0 0 chrX 130243948 130243991 -32355939 + L1PA5 LINE L1 6099 6141 -13 1087 229 75 64 chrX 130243991 130244197 -32355733 + MER4-int LTR ERV1 2011 2224 -4107 * 4649 175 23 15 chrX 130244196 130245082 -32354848 + MER4-int LTR ERV1 189 1081 -5677 1057 275 55 20 chrX 130245095 130245535 -32354395 + L1ME1 LINE L1 5703 6157 -9 707 313 66 39 chrX 130245568 130246368 -32353562 + L1M4 LINE L1 3515 4336 -1810 25 0 0 0 chrX 130248183 130248208 -32351722 + AT_rich Low_complexity Low_complexity 1 25 0 7691 18 0 0 chrX 130248208 130249854 -32350076 - L1PA3 LINE L1 -6 6149 4504 593 355 47 17 chrX 130250190 130250596 -32349334 - L1MEc LINE L1 -5942 454 37 679 276 43 24 chrX 130250655 130251025 -32348905 - L1M4 LINE L1 -2404 3742 3366 1378 159 15 11 chrX 130251046 130251310 -32348620 + L1MA7 LINE L1 6027 6291 0 26 93 0 0 chrX 130251334 130251409 -32348521 + AT_rich Low_complexity Low_complexity 1 75 0 195 42 0 0 chrX 130251552 130251576 -32348354 + (TG)n Simple_repeat Simple_repeat 1 24 0 3822 207 46 5 chrX 130251595 130252449 -32347481 - L1MC1 LINE L1 -18 6315 5427 840 270 54 9 chrX 130252448 130252889 -32347041 - L1M4 LINE L1 -2795 3351 2891 * 238 296 79 13 chrX 130252895 130253047 -32346883 - L1M4 LINE L1 -3284 2862 2701 247 231 37 46 chrX 130253066 130253155 -32346775 - L1MB5 LINE L1 -79 6095 6006 1479 148 131 41 chrX 130253155 130253499 -32346431 - THE1C LTR MaLR 0 375 1 9120 144 9 49 chrX 130253499 130255138 -32344792 - THE1C-int LTR MaLR 0 1580 8 1656 169 64 25 chrX 130255145 130255506 -32344424 - THE1C LTR MaLR 0 375 1 2128 191 52 54 chrX 130255514 130255948 -32343982 - L1MB5 LINE L1 -173 6001 5567 1104 260 119 6 chrX 130255948 130256302 -32343628 + MSTD LTR MaLR 3 396 0 2128 191 52 54 chrX 130256302 130256457 -32343473 - L1MB5 LINE L1 -607 5567 5413 1312 291 71 11 chrX 130256459 130257146 -32342784 + L1MB3 LINE L1 5401 6161 -22 7159 245 83 18 chrX 130259065 130262061 -32337869 - L1M3 LINE L1 -486 5930 2734 21 0 0 0 chrX 130263111 130263132 -32336798 + AT_rich Low_complexity Low_complexity 1 21 0 325 0 0 0 chrX 130263178 130263214 -32336716 - U1 snRNA snRNA -129 36 1 1217 251 46 40 chrX 130263406 130264245 -32335685 - L1M3 LINE L1 -3641 2741 1810 621 135 21 0 chrX 130264245 130264341 -32335589 + MER4A LTR ERV1 1 98 -566 1778 165 6 22 chrX 130264341 130264692 -32335238 + MER4A LTR ERV1 261 664 0 15248 123 86 57 chrX 130264697 130268278 -32331652 + MER4A-int LTR ERV1 3 3477 -3121 1934 150 42 31 chrX 130268278 130268638 -32331292 + THE1B LTR MaLR 1 364 0 15248 123 86 57 chrX 130268638 130268954 -32330976 + MER4A-int LTR ERV1 3477 3782 -2816 2105 142 33 28 chrX 130268954 130269314 -32330616 - THE1B LTR MaLR 0 364 3 15248 123 86 57 chrX 130269314 130271161 -32328769 + MER4A-int LTR ERV1 3782 6597 -1 2132 114 7 10 chrX 130271161 130271469 -32328461 + AluSc SINE Alu 1 307 -2 471 161 54 0 chrX 130271499 130271592 -32328338 + MER4A LTR ERV1 1 98 -566 1775 158 17 22 chrX 130271592 130271939 -32327991 + MER4A LTR ERV1 261 664 0 2499 250 89 23 chrX 130271952 130272930 -32327000 - L1M4c LINE L1 -4651 1912 719 510 46 0 0 chrX 130272995 130273060 -32326870 + (CA)n Simple_repeat Simple_repeat 2 66 0 592 235 0 8 chrX 130273095 130273227 -32326703 + MSTC LTR MaLR 1 131 -297 4779 146 5 2 chrX 130273470 130274651 -32325279 - L1PA15 LINE L1 0 6165 4987 820 313 68 40 chrX 130274651 130275050 -32324880 - L1PA13 LINE L1 -5334 1453 1044 594 244 45 4 chrX 130275117 130275359 -32324571 + L1M4 LINE L1 2144 2395 -3751 * 6096 170 17 13 chrX 130275337 130277343 -32322587 + L1MA2 LINE L1 4291 6304 0 1579 292 74 11 chrX 130277339 130278270 -32321660 + L1M4 LINE L1 2362 3359 -2787 * 6856 254 75 36 chrX 130278322 130280947 -32318983 + L1MA4 LINE L1 256 3675 -3890 1722 110 11 4 chrX 130280956 130281220 -32318710 - L1P4 LINE L1 -424 5742 5477 1934 154 57 0 chrX 130281220 130281538 -32318392 + L1PA16 LINE L1 5822 6157 -9 611 243 26 11 chrX 130281545 130281734 -32318196 + L1MA4 LINE L1 3673 3864 -3701 3091 194 10 69 chrX 130281741 130282622 -32317308 + L1MA4 LINE L1 5524 6352 -1213 1105 178 23 30 chrX 130282610 130283112 -32316818 + L1MA4 LINE L1 6879 7646 -73 * 2497 110 3 0 chrX 130283112 130283466 -32316464 + THE1A LTR MaLR 1 355 0 11168 101 8 2 chrX 130283468 130285037 -32314893 + THE1A-int LTR MaLR 3 1580 0 1625 119 8 0 chrX 130285037 130285273 -32314657 + THE1A LTR MaLR 1 238 -117 1971 113 7 0 chrX 130285273 130285582 -32314348 - L1PA8 LINE L1 -974 5172 4862 6889 59 7 4 chrX 130285582 130286578 -32313352 + L1PA8 LINE L1 5171 6168 -4 1008 78 0 0 chrX 130286578 130286706 -32313224 + THE1A LTR MaLR 228 355 0 1492 231 59 25 chrX 130286768 130287279 -32312651 + L1M1 LINE L1 4859 5386 -2179 1261 186 5 9 chrX 130288009 130288224 -32311706 + MER44D DNA MER2_type 518 603 -2 2644 246 75 27 chrX 130288399 130288671 -32311259 + L1M1 LINE L1 5368 5625 -1940 2341 125 8 16 chrX 130288671 130289038 -32310892 - THE1B LTR MaLR 0 364 1 2644 246 75 27 chrX 130289038 130289744 -32310186 + L1M1 LINE L1 5625 6393 -1172 1905 173 39 22 chrX 130289744 130290102 -32309828 + THE1B LTR MaLR 1 364 0 3859 102 4 0 chrX 130290106 130290644 -32309286 + THE1B-int LTR MaLR 5 544 -1036 947 195 70 11 chrX 130290644 130290829 -32309101 + THE1B LTR MaLR 169 364 0 789 215 15 31 chrX 130290832 130291092 -32308838 + L1M1 LINE L1 6392 6647 -918 2284 292 17 5 chrX 130291146 130291794 -32308136 + L1M2c LINE L1 1 643 -6566 2562 197 76 6 chrX 130291879 130292507 -32307423 + L1M2c LINE L1 1745 2498 -4700 5484 128 4 59 chrX 130292524 130293680 -32306250 + L1PA15 LINE L1 5067 6159 -6 2760 225 66 4 chrX 130293755 130294449 -32305481 - L1MB7 LINE L1 -16 7189 6453 385 283 33 43 chrX 130294464 130294648 -32305282 - L1MB7 LINE L1 -1882 5285 5104 370 282 82 41 chrX 130294642 130294944 -32304986 - L1MB7 LINE L1 -2322 4845 4524 * 3950 236 60 38 chrX 130295071 130296196 -32303734 - L1MB7 LINE L1 -2522 4645 3480 189 0 0 0 chrX 130296196 130296217 -32303713 + (TA)n Simple_repeat Simple_repeat 1 21 0 3950 236 60 38 chrX 130296217 130296499 -32303431 - L1MB7 LINE L1 -3687 3480 3206 1927 223 49 36 chrX 130296496 130297281 -32302649 - L1MB7 LINE L1 -4652 2446 1633 * 950 265 191 12 chrX 130297980 130298052 -32301878 - L1MEc LINE L1 -3291 2924 2866 1647 230 5 20 chrX 130298052 130298448 -32301482 + MLT1B LTR MaLR 1 390 0 950 265 191 12 chrX 130298448 130298963 -32300967 - L1MEc LINE L1 -3349 2866 2232 1216 213 53 13 chrX 130298977 130299277 -32300653 + MER33 DNA MER1_type 11 322 -2 716 263 109 71 chrX 130299284 130300133 -32299797 - L1MEc LINE L1 -4127 2269 1388 1996 131 6 6 chrX 130300234 130300547 -32299383 + MER4C LTR ERV1 153 465 0 16067 174 70 62 chrX 130300550 130301540 -32298390 + MER4C-int LTR ERV1 1 982 -5616 302 0 0 26 chrX 130301540 130301579 -32298351 + (CA)n Simple_repeat Simple_repeat 1 38 0 16067 174 70 62 chrX 130301579 130305747 -32294183 + MER4C-int LTR ERV1 982 5566 -1032 2728 23 0 0 chrX 130305747 130306056 -32293874 + AluY SINE Alu 1 309 -2 16067 174 70 62 chrX 130306056 130307098 -32292832 + MER4C-int LTR ERV1 5566 6598 0 2850 137 2 4 chrX 130307101 130307567 -32292363 + MER4C LTR ERV1 1 465 0 10273 235 24 26 chrX 130307569 130308376 -32291554 - L1P4 LINE L1 -593 5573 4766 3947 127 4 61 chrX 130308376 130309079 -32290851 + MER4A LTR ERV1 1 663 -1 10273 235 24 26 chrX 130309079 130310927 -32289003 - L1P4 LINE L1 -1400 4766 2925 2183 107 3 0 chrX 130310927 130311218 -32288712 - AluSp SINE Alu -21 292 1 10273 235 24 26 chrX 130311218 130311966 -32287964 - L1P4 LINE L1 -3241 2925 2177 10688 199 21 15 chrX 130311988 130315531 -32284399 + L1PB3 LINE L1 2594 6154 0 1116 276 51 64 chrX 130315561 130315602 -32284328 - L1MEc LINE L1 -2875 3769 3729 1562 168 47 10 chrX 130315602 130315899 -32284031 - AluJo SINE Alu -4 308 1 1116 276 51 64 chrX 130315899 130316237 -32283693 - L1MEc LINE L1 -2915 3729 3388 1595 106 0 21 chrX 130316237 130316521 -32283409 + AluSq SINE Alu 54 332 0 1116 276 51 64 chrX 130316521 130317850 -32282080 - L1MEc LINE L1 -3256 3388 2019 446 151 43 0 chrX 130317850 130317943 -32281987 - L1MB3 LINE L1 -3 6180 6084 1116 276 51 64 chrX 130317943 130318123 -32281807 - L1MEc LINE L1 -4625 2019 1838 * 2020 234 66 49 chrX 130318121 130318770 -32281160 - L1MEc LINE L1 -5368 1174 515 7544 172 83 4 chrX 130318783 130321418 -32278512 - L1MA2 LINE L1 0 7723 4862 20998 156 14 11 chrX 130321422 130326204 -32273726 - L1PA10 LINE L1 0 6819 2014 977 194 63 40 chrX 130326181 130326434 -32273496 - L1MA2 LINE L1 -7281 284 26 * 762 278 58 75 chrX 130326415 130326814 -32273116 - L1MEc LINE L1 -5994 548 157 * 23 33 0 0 chrX 130327326 130327356 -32272574 + AT_rich Low_complexity Low_complexity 1 30 0 816 305 91 73 chrX 130327642 130327866 -32272064 + L1M4 LINE L1 440 659 -5607 1534 188 40 59 chrX 130327866 130328238 -32271692 - MLT1A1 LTR MaLR 0 365 1 816 305 91 73 chrX 130328238 130328294 -32271636 + L1M4 LINE L1 659 713 -5553 1418 174 55 65 chrX 130328294 130328587 -32271343 + AluJb SINE Alu 1 290 -22 816 305 91 73 chrX 130328587 130328664 -32271266 + L1M4 LINE L1 713 787 -5479 2176 98 30 0 chrX 130328664 130328960 -32270970 - AluSq SINE Alu -8 305 1 816 305 91 73 chrX 130328960 130329533 -32270397 + L1M4 LINE L1 787 1398 -4868 2041 289 53 57 chrX 130329649 130330572 -32269358 + L1ME LINE L1 62 980 -5879 4596 190 21 8 chrX 130330626 130331817 -32268113 + L1PB4 LINE L1 4942 6153 -3 1771 90 8 0 chrX 130331819 130332108 -32267822 + AluSp SINE Alu 50 340 0 2920 249 26 18 chrX 130332119 130333419 -32266511 + L1M4 LINE L1 4381 5688 -473 21 36 0 0 chrX 130335558 130335586 -32264344 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chrX 130335838 130335873 -32264057 + AT_rich Low_complexity Low_complexity 1 35 0 361 312 65 44 chrX 130336057 130336353 -32263577 + L1ME LINE L1 2220 2565 -4563 2188 99 0 20 chrX 130336361 130336665 -32263265 - AluSq SINE Alu -15 298 1 26 55 0 41 chrX 130336845 130336918 -32263012 + AT_rich Low_complexity Low_complexity 1 70 0 482 296 117 22 chrX 130336957 130337420 -32262510 + L1ME LINE L1 3644 4150 -2807 13593 244 39 18 chrX 130337448 130344305 -32255625 + L1PA16 LINE L1 9 7593 -11 438 281 99 37 chrX 130344365 130344821 -32255109 + L1ME LINE L1 5108 5591 -1366 217 244 0 0 chrX 130344976 130345021 -32254909 + GA-rich Low_complexity Low_complexity 2 46 0 945 292 8 8 chrX 130345130 130345394 -32254536 - LTR16B LTR ERVL -200 264 1 2335 313 62 12 chrX 130345394 130346371 -32253559 + HERV16 LTR ERVL 2244 3264 -1900 365 325 33 27 chrX 130346623 130346952 -32252978 + L1ME LINE L1 6084 6414 -559 396 226 30 100 chrX 130347000 130347243 -32252687 + L1ME4a LINE L1 1083 1346 -4864 510 347 11 6 chrX 130347592 130347768 -32252162 + L2 LINE L2 1050 1226 -2088 2250 61 7 0 chrX 130347873 130348151 -32251779 + AluSp SINE Alu 9 288 -25 1890 287 67 35 chrX 130348291 130348561 -32251369 + L2 LINE L2 1332 1592 -1722 2411 64 0 13 chrX 130348561 130348873 -32251057 + AluY SINE Alu 1 308 -3 1890 287 67 35 chrX 130348873 130349404 -32250526 + L2 LINE L2 1592 2159 -1155 1766 242 76 9 chrX 130349404 130349854 -32250076 + MLT1D LTR MaLR 1 480 -25 11964 185 31 36 chrX 130350102 130352516 -32247414 - L1M1 LINE L1 -5163 2402 1 369 280 59 16 chrX 130352501 130352687 -32247243 + L1ME4a LINE L1 3739 3932 -2197 * 374 267 27 81 chrX 130352973 130353194 -32246736 - MLT1J2 LTR MaLR -241 209 1 259 268 8 49 chrX 130353200 130353323 -32246607 + L1ME4a LINE L1 4036 4153 -1976 298 248 101 103 chrX 130353478 130353844 -32246086 + HAL1b LINE L1 941 1307 -41 862 118 50 0 chrX 130353844 130353907 -32246023 - L1MA8 LINE L1 -4 6287 6229 243 0 0 0 chrX 130353907 130353934 -32245996 + (CA)n Simple_repeat Simple_repeat 2 28 0 862 118 50 0 chrX 130353934 130354031 -32245899 - L1MA8 LINE L1 -62 6229 6119 298 248 101 103 chrX 130354031 130354072 -32245858 + HAL1b LINE L1 1307 1347 -1 389 318 163 27 chrX 130354114 130354557 -32245373 + L1ME4a LINE L1 5297 5799 -1992 228 304 31 12 chrX 130354649 130354810 -32245120 + L1ME4a LINE L1 5938 6101 -3 548 236 160 32 chrX 130355360 130355589 -32244341 - MIR SINE MIR -6 256 13 833 265 40 13 chrX 130355710 130355961 -32243969 - MLT1F1 LTR MaLR -3 546 307 207 100 0 0 chrX 130355990 130356020 -32243910 + (TA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chrX 130356408 130356430 -32243500 + AT_rich Low_complexity Low_complexity 1 22 0 8309 150 31 9 chrX 130356500 130357899 -32242031 + Tigger1 DNA MER2_type 4 1434 -984 3914 174 64 6 chrX 130357898 130358679 -32241251 + Tigger1 DNA MER2_type 1587 2412 -6 * 303 312 69 32 chrX 130358725 130358914 -32241016 - L1 LINE L1 -2282 3864 3669 962 152 16 11 chrX 130359462 130359653 -32240277 - L1MA6 LINE L1 0 6300 6109 10317 177 57 15 chrX 130359653 130360096 -32239834 - L1MA6 LINE L1 -392 5908 5485 2131 128 48 20 chrX 130360096 130360448 -32239482 + THE1B LTR MaLR 1 362 -2 11222 97 7 10 chrX 130360450 130362035 -32237895 + THE1B-int LTR MaLR 1 1580 0 1942 129 46 72 chrX 130362035 130362408 -32237522 + THE1B LTR MaLR 1 363 -1 10317 177 57 15 chrX 130362408 130364773 -32235157 - L1MA6 LINE L1 -814 5486 2980 1447 156 16 24 chrX 130364776 130365026 -32234904 + MER49 LTR ERV1 45 292 -631 227 158 0 26 chrX 130365053 130365091 -32234839 + MER4E LTR ERV1 126 162 -617 795 206 55 58 chrX 130365105 130365409 -32234521 + MER4D LTR ERV1 446 895 -8 5136 273 49 21 chrX 130365432 130367686 -32232244 - L1MEc LINE L1 -1659 4556 2240 1528 282 90 37 chrX 130367797 130368802 -32231128 - L1MEc LINE L1 -4311 2085 1028 456 226 0 0 chrX 130368836 130368920 -32231010 - FLAM_A SINE Alu -18 124 41 1444 321 54 12 chrX 130368929 130369614 -32230316 - L1MEc LINE L1 -5624 772 59 2280 96 93 0 chrX 130369767 130370100 -32229830 + THE1B LTR MaLR 1 364 0 10183 113 20 28 chrX 130370100 130371693 -32228237 + THE1B-int LTR MaLR 1 1580 0 2506 132 3 0 chrX 130371693 130372056 -32227874 + THE1B LTR MaLR 1 364 0 631 300 64 52 chrX 130372208 130373008 -32226922 - L1MEc LINE L1 -4578 1818 1010 207 321 0 0 chrX 130373512 130373596 -32226334 + (TA)n Simple_repeat Simple_repeat 1 84 0 610 187 0 0 chrX 130373675 130373798 -32226132 + L1M1 LINE L1 2032 2154 -5411 1881 310 59 5 chrX 130373811 130374388 -32225542 - L1M4 LINE L1 -5568 1281 674 1804 248 60 4 chrX 130374479 130374931 -32224999 - L1M4 LINE L1 -6366 483 7 285 167 19 0 chrX 130375137 130375191 -32224739 + MLT1J2 LTR MaLR 362 416 -34 369 391 94 12 chrX 130375838 130376242 -32223688 + L2 LINE L2 1163 1599 -1715 273 287 92 67 chrX 130376242 130376437 -32223493 + L2 LINE L2 2279 2478 -836 978 184 0 6 chrX 130376596 130376770 -32223160 - Tigger1 DNA MER2_type 0 2418 2246 6288 189 20 17 chrX 130376777 130378806 -32221124 + L1MA2 LINE L1 4311 6304 0 2326 186 17 48 chrX 130378819 130379593 -32220337 + L1MA5 LINE L1 5323 6038 -262 1312 181 53 15 chrX 130379397 130379662 -32220268 + L1PB4 LINE L1 5837 6111 -45 * 300 211 0 0 chrX 130379662 130379733 -32220197 + (TG)n Simple_repeat Simple_repeat 1 71 0 228 152 0 0 chrX 130379733 130379779 -32220151 + L1PB4 LINE L1 6109 6154 -2 203 319 72 0 chrX 130380399 130380468 -32219462 - MIR SINE MIR -157 105 32 202 369 102 0 chrX 130380621 130380778 -32219152 + L3 LINE CR1 543 715 -862 939 140 0 0 chrX 130381036 130381193 -32218737 + (TA)n Simple_repeat Simple_repeat 1 157 0 420 234 121 0 chrX 130381542 130381666 -32218264 - L1ME1 LINE L1 -7 6159 6021 27 29 0 0 chrX 130381770 130381804 -32218126 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chrX 130382237 130382273 -32217657 + AT_rich Low_complexity Low_complexity 1 36 0 386 304 18 33 chrX 130383487 130383651 -32216279 + MLT1H LTR MaLR 32 208 -341 24 0 0 0 chrX 130384679 130384703 -32215227 + AT_rich Low_complexity Low_complexity 1 24 0 1771 225 26 45 chrX 130385288 130385456 -32214474 - MSTB2 LTR MaLR 0 457 287 2184 96 0 0 chrX 130385456 130385792 -32214138 + AluY SINE Alu 1 336 0 1771 225 26 45 chrX 130385792 130386088 -32213842 - MSTB2 LTR MaLR -170 287 1 3026 274 159 10 chrX 130386088 130387119 -32212811 - MSTB2-int LTR MaLR 0 1651 467 * 6953 171 28 5 chrX 130387111 130389469 -32210461 - L1MA2 LINE L1 0 7723 5310 * 19219 193 31 16 chrX 130389468 130391940 -32207990 - L1MA2 LINE L1 -2739 4826 2393 2495 63 0 0 chrX 130391940 130392239 -32207691 - AluY SINE Alu -12 299 1 19219 193 31 16 chrX 130392239 130394315 -32205615 - L1MA2 LINE L1 -5172 2393 193 2254 134 72 10 chrX 130394315 130394718 -32205212 + MSTA LTR MaLR 1 428 0 19219 193 31 16 chrX 130394718 130394903 -32205027 - L1MA2 LINE L1 -7372 193 12 1788 223 58 11 chrX 130394889 130395352 -32204578 - MSTB2-int LTR MaLR -1166 485 1 * 1584 179 49 85 chrX 130395352 130395800 -32204130 - MSTB1 LTR MaLR 0 432 1 459 305 65 43 chrX 130395856 130396320 -32203610 + MLT1H LTR MaLR 81 555 0 255 125 0 0 chrX 130397076 130397116 -32202814 + (ATGGTG)n Simple_repeat Simple_repeat 5 44 0 354 270 81 52 chrX 130398423 130398597 -32201333 - L1MC/D LINE L1 -2350 5458 5280 6712 233 40 11 chrX 130398614 130399181 -32200749 + L1MB2 LINE L1 3161 3710 -2461 2116 155 31 0 chrX 130399181 130399536 -32200394 + MER47A DNA MER2_type 1 366 0 6712 233 40 11 chrX 130399536 130399811 -32200119 + L1MB2 LINE L1 3710 3975 -2196 2336 81 0 0 chrX 130399811 130400106 -32199824 - AluSq SINE Alu -18 295 1 6712 233 40 11 chrX 130400106 130400328 -32199602 + L1MB2 LINE L1 3975 4189 -1982 240 35 0 0 chrX 130400328 130400357 -32199573 + (CA)n Simple_repeat Simple_repeat 1 29 0 6712 233 40 11 chrX 130400357 130402208 -32197722 + L1MB2 LINE L1 4189 6164 -7 454 115 35 69 chrX 130402450 130402537 -32197393 + THE1C LTR MaLR 209 292 -83 564 180 9 9 chrX 130402544 130402655 -32197275 - FLAM_C SINE Alu -32 111 1 5156 178 36 31 chrX 130402655 130403925 -32196005 + L1MC1 LINE L1 5067 6333 0 24 67 0 0 chrX 130404725 130404770 -32195160 + AT_rich Low_complexity Low_complexity 1 45 0 180 0 0 0 chrX 130405030 130405050 -32194880 + (A)n Simple_repeat Simple_repeat 1 20 0 445 212 191 68 chrX 130405071 130405364 -32194566 - L1MC4a LINE L1 -66 7742 7414 22 0 0 0 chrX 130405568 130405590 -32194340 + AT_rich Low_complexity Low_complexity 1 22 0 3552 215 44 13 chrX 130405706 130406600 -32193330 - L1M LINE L1 -748 5398 4485 917 177 27 0 chrX 130406608 130406794 -32193136 - L1 LINE L1 -2053 4093 3903 * 1481 204 38 26 chrX 130406774 130407191 -32192739 - L1 LINE L1 -1631 4515 4094 3261 210 60 13 chrX 130407423 130408124 -32191806 + MER21B LTR ERV1 129 862 -1 1056 211 40 0 chrX 130408132 130408379 -32191551 - L1 LINE L1 -2051 4095 3839 22 0 0 0 chrX 130408613 130408635 -32191295 + AT_rich Low_complexity Low_complexity 1 22 0 330 153 121 81 chrX 130408646 130408770 -32191160 - L1 LINE L1 -2944 3202 3074 632 236 70 6 chrX 130408804 130408961 -32190969 - MLT1D LTR MaLR -327 178 12 2530 143 18 5 chrX 130409001 130409401 -32190529 - LTR57 LTR ERVL -6 405 1 8953 156 8 0 chrX 130409401 130410770 -32189160 - LTR57-int LTR ERVL 0 5343 3964 3059 242 29 2 chrX 130410769 130411392 -32188538 - LTR57-int LTR ERVL -1554 3789 3150 * 683 237 34 19 chrX 130411392 130411599 -32188331 + AluJb SINE Alu 82 291 -21 24 91 0 0 chrX 130413141 130413207 -32186723 + AT_rich Low_complexity Low_complexity 1 66 0 273 247 120 87 chrX 130413582 130413732 -32186198 + MIR SINE MIR 58 212 -50 12967 147 34 28 chrX 130413839 130415424 -32184506 + Tigger1 DNA MER2_type 1 1608 -810 2246 110 0 16 chrX 130415424 130415741 -32184189 + AluSx SINE Alu 1 312 0 12967 147 34 28 chrX 130415741 130416557 -32183373 + Tigger1 DNA MER2_type 1608 2417 -1 4757 154 66 36 chrX 130416966 130418006 -32181924 + MER11C LTR ERVK 1 1071 0 2274 97 3 7 chrX 130418504 130418812 -32181118 + AluSq SINE Alu 1 307 -6 21 0 0 0 chrX 130419110 130419131 -32180799 + AT_rich Low_complexity Low_complexity 1 21 0 356 214 0 14 chrX 130419135 130419205 -32180725 - Tigger5 DNA MER2_type -4 2319 2251 28 0 0 0 chrX 130420606 130420634 -32179296 + AT_rich Low_complexity Low_complexity 1 28 0 194 91 30 0 chrX 130420831 130420864 -32179066 + GA-rich Low_complexity Low_complexity 2 35 0 5396 153 15 9 chrX 130421120 130422038 -32177892 + L1PB1 LINE L1 875 1798 -5065 * 13369 186 25 23 chrX 130422033 130424696 -32175234 + L1PB1 LINE L1 2448 5125 -1742 207 0 0 0 chrX 130424696 130424719 -32175211 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 13369 186 25 23 chrX 130424719 130426463 -32173467 + L1PB1 LINE L1 5125 6864 -3 811 217 5 38 chrX 130427144 130427328 -32172602 - FRAM SINE Alu -6 170 1 339 183 0 42 chrX 130427349 130427420 -32172510 - Alu SINE Alu -1 301 234 827 167 43 31 chrX 130477483 130477645 -32122285 + HERVL74 LTR ERVL 3910 4073 -1612 * 1750 212 80 96 chrX 130477633 130478198 -32121732 + HERVL74 LTR ERVL 4586 5141 -544 1258 176 3 109 chrX 130478272 130478348 -32121582 - MER54B LTR ERVL 0 793 711 1856 148 0 7 chrX 130478348 130478638 -32121292 - AluSx SINE Alu -24 288 1 1258 176 3 109 chrX 130478638 130478873 -32121057 - MER54B LTR ERVL -82 711 515 212 154 0 0 chrX 130478875 130478914 -32121016 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 666 296 11 15 chrX 130479053 130479317 -32120613 + L1M4 LINE L1 3243 3505 -2641 331 325 30 0 chrX 130479329 130479526 -32120404 - L1M4 LINE L1 -2646 3500 3298 5228 219 43 31 chrX 130479620 130482052 -32117878 - L1PB4 LINE L1 -1 6224 35 21 57 0 0 chrX 130482759 130482794 -32117136 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chrX 130482829 130482853 -32117077 + (TA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chrX 130483459 130483482 -32116448 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 130483739 130483767 -32116163 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chrX 130483907 130483939 -32115991 + AT_rich Low_complexity Low_complexity 1 32 0 260 188 43 29 chrX 130484411 130484549 -32115381 + (TATAA)n Simple_repeat Simple_repeat 1 140 0 2223 62 41 3 chrX 130485568 130485860 -32114070 - AluY SINE Alu -8 303 1 22 0 0 0 chrX 130486591 130486613 -32113317 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chrX 130486723 130486767 -32113163 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chrX 130486822 130486844 -32113086 + AT_rich Low_complexity Low_complexity 1 22 0 231 36 0 0 chrX 130486958 130486986 -32112944 + (TA)n Simple_repeat Simple_repeat 2 29 0 1405 224 88 0 chrX 130487037 130487390 -32112540 - L1 LINE L1 -1188 4958 4575 4011 195 37 31 chrX 130487393 130487813 -32112117 + L1MA10 LINE L1 5374 5790 -544 351 0 0 0 chrX 130487813 130487852 -32112078 + (CA)n Simple_repeat Simple_repeat 2 40 0 4011 195 37 31 chrX 130487852 130488375 -32111555 + L1MA10 LINE L1 5790 6323 -11 831 138 6 48 chrX 130488689 130488856 -32111074 - L1MB1 LINE L1 -1 6167 6008 2033 95 0 28 chrX 130489026 130489311 -32110619 + AluY SINE Alu 3 279 -32 26 0 0 0 chrX 130489599 130489625 -32110305 + AT_rich Low_complexity Low_complexity 1 26 0 3630 126 2 2 chrX 130489793 130490315 -32109615 + MER1A DNA MER1_type 8 529 0 1817 131 51 4 chrX 130490540 130490814 -32109116 - AluSx SINE Alu -25 287 1 219 280 126 21 chrX 130491739 130491882 -32108048 - L3 LINE CR1 -64 1513 1356 25 31 0 0 chrX 130491946 130491978 -32107952 + AT_rich Low_complexity Low_complexity 1 32 0 3085 201 21 13 chrX 130492543 130493223 -32106707 - L1MB1 LINE L1 -7 6863 6179 1772 202 36 8 chrX 130493268 130493654 -32106276 - L1MA9 LINE L1 -50 6262 5866 * 2363 209 44 30 chrX 130493649 130494497 -32105433 + L1MA9 LINE L1 5029 5885 -427 3662 219 43 29 chrX 130494499 130495644 -32104286 - L1MB1 LINE L1 -743 6105 5013 1149 158 74 11 chrX 130495645 130496088 -32103842 - L1MA9 LINE L1 0 6312 5710 1156 155 0 5 chrX 130496092 130496298 -32103632 - L1MA9 LINE L1 -1338 4808 4604 4104 174 24 38 chrX 130496300 130497180 -32102750 - MER11C LTR ERVK 0 1071 204 483 252 29 0 chrX 130497300 130497439 -32102491 + L1 LINE L1 2642 2784 -3362 * 750 203 71 6 chrX 130497427 130497609 -32102321 + L1 LINE L1 3788 3981 -2165 3494 185 31 46 chrX 130497621 130498608 -32101322 - L1MB1 LINE L1 -3815 3033 2065 5716 171 18 17 chrX 130498614 130499569 -32100361 - L1PB2 LINE L1 -2 6149 5196 237 65 0 0 chrX 130499569 130499600 -32100330 + (ATG)n Simple_repeat Simple_repeat 2 32 0 5716 171 18 17 chrX 130499600 130499924 -32100006 - L1PB2 LINE L1 -955 5196 4874 1445 18 0 0 chrX 130499924 130500092 -32099838 - L1PA2 LINE L1 -3 6152 5985 5716 171 18 17 chrX 130500092 130500606 -32099324 - L1PB2 LINE L1 -1277 4874 4362 5538 246 55 24 chrX 130500590 130502552 -32097378 - L1MB1 LINE L1 -4791 2058 1 * 509 380 119 3 chrX 130502589 130502934 -32096996 - L3 LINE CR1 -670 907 523 1696 182 24 6 chrX 130502936 130503265 -32096665 + MER47A DNA MER2_type 28 362 -4 28 48 0 0 chrX 130503456 130503498 -32096432 + AT_rich Low_complexity Low_complexity 1 42 0 3971 220 12 10 chrX 130503524 130504441 -32095489 + L1P LINE L1 4156 5074 -1072 25 31 0 0 chrX 130504645 130504677 -32095253 + AT_rich Low_complexity Low_complexity 1 32 0 5314 150 11 0 chrX 130504733 130505860 -32094070 - L1PA16 LINE L1 -9 6157 5023 1048 130 49 5 chrX 130505860 130506040 -32093890 - L1MA3 LINE L1 0 6305 6113 890 285 37 12 chrX 130506530 130506772 -32093158 - MER76 LTR ERV 0 688 441 1728 184 25 50 chrX 130506795 130507191 -32092739 + MLT1B LTR MaLR 1 386 -4 1646 193 43 33 chrX 130507196 130507564 -32092366 - MLT1B LTR MaLR -18 372 1 9344 135 19 0 chrX 130507653 130509982 -32089948 + L1PA10 LINE L1 3788 6165 -3 1038 217 4 21 chrX 130509986 130510260 -32089670 - MER76 LTR ERV -327 361 1 195 441 35 18 chrX 130510488 130510717 -32089213 - L3 LINE CR1 -1281 296 64 21 36 0 0 chrX 130511406 130511434 -32088496 + AT_rich Low_complexity Low_complexity 1 28 0 1958 93 3 35 chrX 130512617 130512907 -32087023 - AluSx SINE Alu -11 301 21 553 135 31 10 chrX 130514802 130514898 -32085032 + MER4A LTR ERV1 1 98 -566 * 1575 133 8 79 chrX 130514894 130515269 -32084661 + MER4A LTR ERV1 257 663 -1 2425 231 49 4 chrX 130515272 130516011 -32083919 - L1 LINE L1 -2535 3611 2840 * 4118 223 27 14 chrX 130516010 130516268 -32083662 + L1MB1 LINE L1 4092 4345 -1801 1746 196 79 12 chrX 130516268 130516696 -32083234 + MSTB2 LTR MaLR 1 457 0 4118 223 27 14 chrX 130516696 130517470 -32082460 + L1MB1 LINE L1 4345 5137 -1009 2012 217 49 2 chrX 130517473 130517939 -32081991 + L1MB1 LINE L1 5681 6168 0 495 0 0 0 chrX 130518385 130518440 -32081490 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 690 338 49 56 chrX 130518937 130519490 -32080440 - LTR67 LTR ERVL 0 557 9 1367 215 101 3 chrX 130519676 130519992 -32079938 + MER7A DNA MER2_type 1 345 -1 5439 36 0 0 chrX 130520005 130520677 -32079253 - L1PA3 LINE L1 -757 5389 4718 6549 22 0 3 chrX 130520677 130521441 -32078489 + L1PA3 LINE L1 5390 6152 -3 295 168 7 15 chrX 130521674 130521751 -32078179 + L1MA8 LINE L1 6226 6291 0 227 256 23 98 chrX 130522874 130523007 -32076923 - MIR3 SINE MIR -14 194 72 22 56 0 0 chrX 130523126 130523162 -32076768 + AT_rich Low_complexity Low_complexity 1 36 0 2042 147 13 21 chrX 130523162 130523550 -32076380 - L1MA2 LINE L1 0 6304 5920 24 85 0 0 chrX 130523798 130523857 -32076073 + AT_rich Low_complexity Low_complexity 1 59 0 414 110 0 14 chrX 130523857 130523930 -32076000 - L1PB3 LINE L1 -1 6153 6082 3342 171 23 17 chrX 130523930 130524245 -32075685 - L1PB3 LINE L1 -432 5722 5411 2570 101 14 0 chrX 130524245 130524593 -32075337 + THE1A LTR MaLR 1 353 -2 11299 101 7 2 chrX 130524595 130526167 -32073763 + THE1A-int LTR MaLR 1 1580 0 2451 114 0 25 chrX 130526170 130526531 -32073399 + THE1A LTR MaLR 4 355 0 3342 171 23 17 chrX 130526531 130527304 -32072626 - L1PB3 LINE L1 -744 5410 4618 212 344 0 0 chrX 130527968 130528029 -32071901 + CT-rich Low_complexity Low_complexity 4 64 0 410 230 40 90 chrX 130528435 130528635 -32071295 + L1MCc LINE L1 41 230 -6193 567 253 65 0 chrX 130528659 130528813 -32071117 + L1ME1 LINE L1 5977 6140 -26 253 305 49 12 chrX 130529321 130529403 -32070527 - L2 LINE L2 -19 3294 3210 427 316 0 26 chrX 130529619 130529774 -32070156 - MIR SINE MIR 0 262 112 252 393 67 7 chrX 130530054 130530189 -32069741 + MIR3 SINE MIR 3 145 -63 1568 150 53 47 chrX 130530469 130530780 -32069150 + L1MA7 LINE L1 5923 6238 -53 1750 179 3 0 chrX 130530780 130531076 -32068854 + AluJb SINE Alu 1 297 -15 1568 150 53 47 chrX 130531076 130531125 -32068805 + L1MA7 LINE L1 6238 6285 -6 1008 237 0 111 chrX 130531153 130531503 -32068427 - MLT1A2 LTR MaLR -11 363 53 1602 173 18 3 chrX 130531799 130532083 -32067847 - AluJb SINE Alu -24 288 1 300 53 0 0 chrX 130533297 130533335 -32066595 + (TG)n Simple_repeat Simple_repeat 1 38 0 945 330 84 13 chrX 130533615 130534263 -32065667 - L2 LINE L2 0 3313 2616 2414 246 82 54 chrX 130534275 130534481 -32065449 + L1M4 LINE L1 2306 2505 -3641 2035 97 3 37 chrX 130534481 130534779 -32065151 + AluSq SINE Alu 1 288 -25 2414 246 82 54 chrX 130534779 130535834 -32064096 + L1M4 LINE L1 2505 3603 -2543 996 236 26 49 chrX 130535958 130536221 -32063709 + L1M4 LINE L1 4699 4954 -1192 2106 108 0 0 chrX 130536221 130536508 -32063422 + AluSx SINE Alu 9 295 -17 996 236 26 49 chrX 130536508 130536591 -32063339 + L1M4 LINE L1 4954 5037 -1109 * 3014 53 10 1 chrX 130536588 130537107 -32062823 - L1P3 LINE L1 -650 5504 4984 6625 91 26 1 chrX 130537107 130538046 -32061884 + L1P3 LINE L1 4027 4988 -1158 4417 261 65 14 chrX 130538045 130539353 -32060577 - L1MB5 LINE L1 -343 5831 4343 * 2373 122 27 61 chrX 130539353 130539796 -32060134 - MSTA LTR MaLR 0 428 1 4417 261 65 14 chrX 130539796 130540800 -32059130 - L1MB5 LINE L1 -1831 4343 3392 1233 95 0 0 chrX 130540813 130540971 -32058959 - AluY SINE Alu -20 291 134 2771 19 0 0 chrX 130540974 130541285 -32058645 - AluY SINE Alu 0 311 1 14196 195 28 13 chrX 130541466 130541802 -32058128 - L1PB1 LINE L1 -1 6866 6536 423 38 0 0 chrX 130541802 130541855 -32058075 + (TG)n Simple_repeat Simple_repeat 1 53 0 14196 195 28 13 chrX 130541855 130543606 -32056324 - L1PB1 LINE L1 -331 6536 4813 1822 152 3 37 chrX 130543606 130543929 -32056001 - AluSx SINE Alu 0 312 1 14196 195 28 13 chrX 130543929 130546833 -32053097 - L1PB1 LINE L1 -2054 4813 1733 6169 60 6 5 chrX 130546833 130547612 -32052318 + LTR17 LTR ERV1 1 780 0 3228 146 19 18 chrX 130547612 130548319 -32051611 - L1PB1 LINE L1 -5372 1491 637 1197 144 0 5 chrX 130548322 130548523 -32051407 - L1PB1 LINE L1 -6663 200 1 15972 199 51 26 chrX 130548778 130550380 -32049550 - L1 LINE L1 -2359 5206 3646 2094 127 19 38 chrX 130550380 130550749 -32049181 - THE1B LTR MaLR -2 362 1 9645 124 39 32 chrX 130550749 130552318 -32047612 - THE1B-int LTR MaLR 0 1580 1 2127 157 11 24 chrX 130552318 130552687 -32047243 - THE1B LTR MaLR 0 364 1 15972 199 51 26 chrX 130552687 130553093 -32046837 - L1 LINE L1 -3919 3646 3252 1846 152 0 4 chrX 130553093 130553370 -32046560 - AluSx SINE Alu -18 294 19 15972 199 51 26 chrX 130553370 130556328 -32043602 - L1 LINE L1 -4313 3252 100 243 0 0 0 chrX 130556328 130556355 -32043575 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 15972 199 51 26 chrX 130556355 130556436 -32043494 - L1 LINE L1 -7465 100 23 22 0 0 0 chrX 130556460 130556482 -32043448 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 130556949 130556973 -32042957 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chrX 130557663 130557717 -32042213 + AT_rich Low_complexity Low_complexity 1 54 0 246 287 90 16 chrX 130558022 130558144 -32041786 - L1ME4a LINE L1 0 6121 5991 575 293 79 25 chrX 130558219 130558712 -32041218 - L1ME4a LINE L1 -268 5853 5327 23 0 0 0 chrX 130558832 130558855 -32041075 + AT_rich Low_complexity Low_complexity 1 23 0 444 216 16 49 chrX 130558915 130559100 -32040830 + (TA)n Simple_repeat Simple_repeat 2 180 0 232 206 15 20 chrX 130559108 130559205 -32040725 + L1MC4 LINE L1 2006 6988 -1334 703 212 31 52 chrX 130559435 130559628 -32040302 + MER58A DNA MER1_type 36 224 0 18121 35 0 1 chrX 130559997 130562964 -32036966 - L1PA2 LINE L1 -6 6149 3184 6048 28 0 1 chrX 130562964 130563712 -32036218 + L1PA2 LINE L1 2449 3195 -2951 28 71 0 0 chrX 130564312 130564368 -32035562 + AT_rich Low_complexity Low_complexity 1 56 0 1481 212 10 14 chrX 130564870 130565167 -32034763 - AluJo SINE Alu -16 296 1 584 229 57 14 chrX 130565288 130565428 -32034502 - L1MB8 LINE L1 -132 6046 5901 250 303 0 0 chrX 130565487 130565563 -32034367 + GA-rich Low_complexity Low_complexity 3 78 0 2828 208 41 78 chrX 130566162 130567064 -32032866 - L1MB7 LINE L1 0 6184 5316 2005 88 21 0 chrX 130567204 130567487 -32032443 - AluY SINE Alu -19 292 4 410 225 18 0 chrX 130567734 130567845 -32032085 - L1MB7 LINE L1 -823 5323 5211 1368 205 24 18 chrX 130567864 130568205 -32031725 - L1MB1 LINE L1 -1 6167 5825 21 71 0 0 chrX 130568526 130568568 -32031362 + AT_rich Low_complexity Low_complexity 1 42 0 25 75 0 0 chrX 130568850 130568903 -32031027 + AT_rich Low_complexity Low_complexity 1 53 0 41954 52 9 1 chrX 130568929 130575030 -32024900 - L1PA4 LINE L1 -5 6150 4 1218 306 63 14 chrX 130575374 130575933 -32023997 + L1MB1 LINE L1 929 1514 -5949 14035 185 17 8 chrX 130575972 130581075 -32018855 + L1MA1 LINE L1 2593 7721 0 1993 132 10 7 chrX 130581132 130581442 -32018488 + AluSx SINE Alu 1 311 -1 7044 230 65 14 chrX 130581442 130582868 -32017062 + L1MB1 LINE L1 4543 6123 -1464 315 49 0 0 chrX 130582868 130582909 -32017021 + (CA)n Simple_repeat Simple_repeat 2 42 0 7044 230 65 14 chrX 130582909 130583692 -32016238 + L1MB1 LINE L1 6123 6865 -722 2160 177 3 0 chrX 130583694 130584062 -32015868 - L1P LINE L1 -1777 4369 4001 2903 134 15 0 chrX 130584062 130584531 -32015399 + L1PA13 LINE L1 5684 6160 -3 2572 219 11 4 chrX 130584533 130585085 -32014845 + L1MB1 LINE L1 6852 7407 -180 1210 265 49 63 chrX 130585189 130585699 -32014231 - MLT1D LTR MaLR 0 505 3 358 288 27 9 chrX 130585732 130585843 -32014087 - MLT1G1 LTR MaLR -451 144 32 201 74 0 0 chrX 130586328 130586355 -32013575 + (CATTT)n Simple_repeat Simple_repeat 2 28 0 4385 176 49 57 chrX 130586909 130587989 -32011941 - MER11C LTR ERVK 0 1071 1 207 0 0 0 chrX 130588030 130588053 -32011877 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 640 253 13 6 chrX 130588063 130588221 -32011709 - AluJb SINE Alu -25 287 129 48 18 0 0 chrX 130588424 130588479 -32011451 + AT_rich Low_complexity Low_complexity 1 55 0 200 35 35 0 chrX 130590464 130590493 -32009437 + (CTAG)n Simple_repeat Simple_repeat 2 31 0 37 62 0 0 chrX 130590660 130590725 -32009205 + AT_rich Low_complexity Low_complexity 1 65 0 601 279 14 0 chrX 130590990 130591137 -32008793 + MER5B DNA MER1_type 7 155 -23 1166 261 85 5 chrX 130591243 130591679 -32008251 - Charlie4a DNA MER1_type 0 508 38 23 33 0 0 chrX 130592176 130592206 -32007724 + AT_rich Low_complexity Low_complexity 1 30 0 13694 211 40 30 chrX 130592849 130593204 -32006726 - L1MA8 LINE L1 -462 6850 6500 2199 114 16 0 chrX 130593204 130593512 -32006418 - AluSq SINE Alu 0 313 1 13694 211 40 30 chrX 130593512 130593686 -32006244 - L1MA8 LINE L1 -812 6500 6329 2171 118 3 0 chrX 130593686 130593982 -32005948 - AluSp SINE Alu -16 297 1 13694 211 40 30 chrX 130593982 130598937 -32000993 - L1MA8 LINE L1 -983 6329 1588 331 268 103 0 chrX 130600133 130600230 -31999700 - L1M4b LINE L1 -6746 113 7 988 275 120 15 chrX 130600253 130600853 -31999077 - L1M4 LINE L1 -1419 4727 4065 205 152 0 0 chrX 130602210 130602243 -31997687 + (TG)n Simple_repeat Simple_repeat 2 34 0 217 324 70 33 chrX 130602261 130602474 -31997456 + L2 LINE L2 2170 2390 -924 2050 223 75 4 chrX 130602869 130603339 -31996591 + MLT1D LTR MaLR 3 505 0 47 44 0 0 chrX 130603370 130603438 -31996492 + AT_rich Low_complexity Low_complexity 1 68 0 373 339 54 43 chrX 130603650 130603839 -31996091 + L2 LINE L2 2183 2377 -937 6584 54 0 0 chrX 130603839 130604659 -31995271 + L1PA7 LINE L1 5329 6148 -6 373 339 54 43 chrX 130604659 130604746 -31995184 + L2 LINE L2 2377 2462 -852 231 274 0 0 chrX 130604743 130604794 -31995136 - L2 LINE L2 0 3313 3263 * 1022 103 14 0 chrX 130604795 130604941 -31994989 + L1P3 LINE L1 5575 5722 -432 33 43 0 0 chrX 130604955 130605002 -31994928 + AT_rich Low_complexity Low_complexity 1 47 0 482 237 57 99 chrX 130605315 130605598 -31994332 + L1ME LINE L1 5401 5671 -450 6463 149 32 25 chrX 130605778 130607000 -31992930 + Tigger3b DNA MER2_type 2 1231 0 1244 176 59 139 chrX 130607046 130607317 -31992613 - MLT2B1 LTR ERVL -69 345 111 2282 93 0 10 chrX 130607317 130607617 -31992313 - AluSq SINE Alu -16 297 1 1244 176 59 139 chrX 130607617 130607720 -31992210 - MLT2B1 LTR ERVL -303 111 1 3931 192 23 35 chrX 130607720 130608558 -31991372 - ERVL-B1 LTR ERVL -7 5757 4930 1290 219 4 0 chrX 130608589 130608863 -31991067 - L1M4 LINE L1 -2053 4093 3819 653 72 0 0 chrX 130608860 130608943 -31990987 - L1P4 LINE L1 -457 5709 5627 * 423 316 89 51 chrX 130608943 130609313 -31990617 + L2 LINE L2 2882 3265 -48 1695 146 37 12 chrX 130610082 130610405 -31989525 + L1MA3 LINE L1 5975 6305 0 800 215 19 187 chrX 130610406 130610620 -31989310 - MLT1A1 LTR MaLR -24 341 161 663 224 17 40 chrX 130610658 130610685 -31989245 - MLT1A1 LTR MaLR -204 170 144 2096 139 58 0 chrX 130610685 130611029 -31988901 - THE1B LTR MaLR 0 364 1 663 224 17 40 chrX 130611029 130611175 -31988755 - MLT1A1 LTR MaLR -230 144 1 185 327 73 0 chrX 130611211 130611266 -31988664 + MIR SINE MIR 114 172 -90 24 0 0 0 chrX 130611953 130611977 -31987953 + AT_rich Low_complexity Low_complexity 1 24 0 698 296 32 8 chrX 130612702 130612952 -31986978 - MIR SINE MIR -3 259 4 365 272 63 23 chrX 130613272 130613463 -31986467 - MIR SINE MIR -34 228 32 246 237 72 41 chrX 130613626 130613723 -31986207 - MLT1J1 LTR MaLR 0 446 347 * 366 275 45 20 chrX 130613719 130613904 -31986026 - MLT1I LTR MaLR -145 301 107 1011 168 0 0 chrX 130614144 130614364 -31985566 + (TA)n Simple_repeat Simple_repeat 1 220 0 1587 176 29 35 chrX 130615248 130615589 -31984341 - MER44D DNA MER2_type 0 609 1 823 235 0 21 chrX 130615808 130615995 -31983935 - AluJo SINE Alu -16 296 114 458 119 50 20 chrX 130616069 130616170 -31983760 + L1M4 LINE L1 2620 2723 -3423 * 845 202 28 77 chrX 130616154 130616240 -31983690 - L1MA7 LINE L1 -296 5995 5906 2271 99 0 0 chrX 130616240 130616534 -31983396 + AluSx SINE Alu 1 294 -18 845 202 28 77 chrX 130616534 130616695 -31983235 - L1MA7 LINE L1 -385 5906 5760 * 1005 152 12 0 chrX 130616685 130616850 -31983080 + L1M2 LINE L1 5643 5809 -482 347 0 23 0 chrX 130617569 130617612 -31982318 + (TA)n Simple_repeat Simple_repeat 2 45 0 1924 134 7 0 chrX 130617614 130617891 -31982039 - AluSg SINE Alu -31 279 1 1498 265 76 20 chrX 130618099 130618971 -31980959 - L1M4c LINE L1 -3381 3576 2655 1550 290 88 50 chrX 130619191 130620054 -31979876 - L1M4c LINE L1 -5672 1187 217 622 166 58 112 chrX 130620103 130620308 -31979622 + MLT1A1 LTR MaLR 1 194 -171 397 258 67 0 chrX 130620363 130620483 -31979447 + MLT1A1 LTR MaLR 181 308 -66 2456 156 19 0 chrX 130620483 130620907 -31979023 + L1PB4 LINE L1 5581 6012 -144 320 332 68 39 chrX 130620907 130621317 -31978613 - L1M4 LINE L1 -1317 4829 4408 3666 197 63 34 chrX 130621327 130622291 -31977639 - L1MC3 LINE L1 -21 7764 6773 506 349 16 8 chrX 130622380 130622635 -31977295 - L1M4 LINE L1 -1815 4331 4075 595 321 15 74 chrX 130622679 130623072 -31976858 + L2 LINE L2 2944 3313 0 229 303 14 76 chrX 130623126 130623271 -31976659 + L2 LINE L2 3154 3289 -24 215 337 11 32 chrX 130623429 130623524 -31976406 + L2 LINE L2 2877 2969 -345 5411 222 38 5 chrX 130623535 130625933 -31973997 - L1MC1 LINE L1 0 6613 4134 1481 214 39 21 chrX 130625966 130626303 -31973627 - MLT1A1 LTR MaLR -22 343 1 4739 247 92 24 chrX 130626304 130628268 -31971662 - L1MC1 LINE L1 -2289 4137 2307 1833 191 34 3 chrX 130628268 130628623 -31971307 + MER47A DNA MER2_type 1 366 0 4739 247 92 24 chrX 130628623 130630275 -31969655 - L1MC1 LINE L1 -4119 2307 4 344 309 22 37 chrX 130630367 130630503 -31969427 + L2 LINE L2 3180 3313 0 237 153 0 68 chrX 130631174 130631233 -31968697 - HSMAR1 DNA Mariner 0 1287 1233 25 31 0 0 chrX 130631514 130631546 -31968384 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chrX 130632708 130632739 -31967191 + AT_rich Low_complexity Low_complexity 1 31 0 1591 161 46 4 chrX 130633314 130633594 -31966336 + AluJb SINE Alu 1 292 -20 4626 68 5 16 chrX 130633807 130634440 -31965490 + L1PA8 LINE L1 5547 6172 0 259 200 0 40 chrX 130636521 130636596 -31963334 - L1MD2 LINE L1 0 6359 6288 543 215 56 0 chrX 130636610 130636754 -31963176 - L1MD1 LINE L1 -168 6074 5923 5355 234 78 16 chrX 130636758 130638569 -31961361 + L1M4 LINE L1 5 2023 -4623 961 274 32 3 chrX 130638734 130639103 -31960827 + L1M4 LINE L1 2292 2671 -3975 669 291 28 53 chrX 130639102 130639464 -31960466 + L1M4 LINE L1 3672 4025 -2619 * 2052 114 69 9 chrX 130639464 130639814 -31960116 - THE1C LTR MaLR 0 375 5 669 291 28 53 chrX 130639814 130639850 -31960080 + L1M4 LINE L1 4025 4060 -2584 1973 143 0 0 chrX 130639862 130640156 -31959774 + AluSq SINE Alu 3 296 -17 2073 134 3 0 chrX 130640196 130640503 -31959427 + AluY SINE Alu 1 308 -3 820 254 87 17 chrX 130640559 130640858 -31959072 + L1PBa LINE L1 9 328 -6535 1374 180 133 26 chrX 130640861 130641200 -31958730 - THE1C LTR MaLR 0 375 1 1180 111 6 17 chrX 130641200 130641380 -31958550 - THE1C-int LTR MaLR 0 1580 1403 208 345 0 18 chrX 130641625 130641680 -31958250 - L2 LINE L2 -26 3246 3193 201 222 0 0 chrX 130641847 130641910 -31958020 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chrX 130642038 130642059 -31957871 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chrX 130642705 130642736 -31957194 + AT_rich Low_complexity Low_complexity 1 31 0 283 220 0 0 chrX 130643022 130643081 -31956849 - L1ME LINE L1 -569 6095 6037 416 281 14 7 chrX 130643142 130643281 -31956649 - L1ME LINE L1 -2606 4038 3899 * 3198 273 74 30 chrX 130643263 130645226 -31954704 - L1ME LINE L1 -610 5552 3507 1756 234 87 35 chrX 130645435 130645746 -31954184 - L1ME LINE L1 -2940 3704 3411 1948 150 61 17 chrX 130645746 130646105 -31953825 + THE1C LTR MaLR 1 375 0 1756 234 87 35 chrX 130646105 130646597 -31953333 - L1ME LINE L1 -3233 3411 2859 4926 176 13 10 chrX 130646619 130647981 -31951949 - L1MA8 LINE L1 -112 6179 4819 334 264 87 14 chrX 130648173 130648391 -31951539 - L1MEc LINE L1 -5000 1649 1320 1687 203 42 0 chrX 130648458 130648515 -31951415 - L1MA5 LINE L1 -4 6296 6243 360 0 0 0 chrX 130648515 130648555 -31951375 + (TA)n Simple_repeat Simple_repeat 2 41 0 1687 203 42 0 chrX 130648555 130648882 -31951048 - L1MA5 LINE L1 -57 6243 5896 3537 161 19 6 chrX 130648914 130649562 -31950368 - L1MA3 LINE L1 -8 6297 5642 11919 207 30 107 chrX 130649562 130649930 -31950000 - L1M4 LINE L1 -1369 6196 5801 180 0 0 0 chrX 130649930 130649950 -31949980 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 11919 207 30 107 chrX 130649950 130650545 -31949385 - L1M4 LINE L1 -1764 5801 5162 1857 45 66 0 chrX 130650545 130650787 -31949143 + L1PA8 LINE L1 5910 6167 -5 11919 207 30 107 chrX 130650787 130654135 -31945795 - L1M4 LINE L1 -2403 5162 1870 1849 216 73 60 chrX 130654135 130654682 -31945248 - MLT2B3 LTR ERVL 0 554 1 11919 207 30 107 chrX 130654682 130655744 -31944186 - L1M4 LINE L1 -5695 1870 728 7424 112 4 4 chrX 130655746 130656785 -31943145 - HERVL-A2 LTR ERVL -758 4896 3858 6941 128 6 11 chrX 130656781 130657842 -31942088 - HERVL-A2 LTR ERVL -4599 1055 1 * 383 174 4 0 chrX 130657844 130657918 -31942012 - MLT2A2 LTR ERVL -2 451 386 2257 163 18 34 chrX 130658538 130658979 -31940951 + Tigger2a DNA MER2_type 1 434 0 459 230 43 36 chrX 130659456 130659595 -31940335 - L2 LINE L2 -1 3312 3173 1565 66 5 14 chrX 130659595 130659807 -31940123 + L1MA2 LINE L1 5718 5927 -377 1134 195 5 0 chrX 130659927 130660137 -31939793 + L1P LINE L1 3448 3658 -2488 699 266 61 0 chrX 130660139 130660466 -31939464 - L1 LINE L1 -2865 3983 3637 677 239 80 11 chrX 130660477 130660665 -31939265 - L1 LINE L1 -5635 1214 1014 292 186 88 88 chrX 130660699 130660801 -31939129 - MSTB2 LTR MaLR -308 149 48 1518 174 47 3 chrX 130660802 130661124 -31938806 + L1 LINE L1 4236 4571 -1575 1608 183 133 26 chrX 130661124 130661352 -31938578 - LTR2B LTR ERV1 0 490 288 186 43 0 0 chrX 130661352 130661375 -31938555 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 1608 183 133 26 chrX 130661375 130661561 -31938369 - LTR2B LTR ERV1 -202 288 32 1413 130 26 19 chrX 130661576 130661845 -31938085 + L1 LINE L1 4564 4834 -1312 304 143 16 0 chrX 130661845 130661908 -31938022 + L1MA3 LINE L1 6242 6305 0 318 194 6 3 chrX 130662158 130662231 -31937699 + L1P4 LINE L1 5675 5748 -407 589 278 77 43 chrX 130662236 130662470 -31937460 + LTR16B LTR ERVL 54 295 -169 792 249 74 40 chrX 130662842 130663044 -31936886 + L1ME3A LINE L1 5222 5416 -754 1601 164 75 0 chrX 130663044 130663325 -31936605 + AluSx SINE Alu 3 304 -8 792 249 74 40 chrX 130663325 130663533 -31936397 + L1ME3A LINE L1 5416 5641 -529 304 318 127 13 chrX 130663595 130663750 -31936180 + L1ME3A LINE L1 5907 6100 -70 222 118 0 0 chrX 130663750 130663784 -31936146 + (TA)n Simple_repeat Simple_repeat 2 35 0 304 318 127 13 chrX 130663784 130663864 -31936066 + L1ME3A LINE L1 6100 6169 -1 195 100 0 0 chrX 130664152 130664182 -31935748 + (TG)n Simple_repeat Simple_repeat 2 31 0 22 70 0 0 chrX 130664231 130664274 -31935656 + AT_rich Low_complexity Low_complexity 1 43 0 8266 203 50 11 chrX 130665752 130668604 -31931326 - L1MA9 LINE L1 -190 6122 3167 1564 76 0 5 chrX 130668605 130668803 -31931127 - AluSc SINE Alu -112 197 1 5950 99 13 0 chrX 130668816 130669773 -31930157 - L1PA14 LINE L1 -7 6154 5174 895 184 7 7 chrX 130669773 130669967 -31929963 - L1M4 LINE L1 -3741 2405 2217 852 171 64 38 chrX 130669973 130670171 -31929759 - L1PB4 LINE L1 -4 6152 5948 301 237 21 43 chrX 130670962 130671055 -31928875 - L1MC4 LINE L1 -1339 6703 6613 231 305 0 0 chrX 130671592 130671651 -31928279 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 237 300 38 0 chrX 130671877 130671957 -31927973 - MIR3 SINE MIR -6 202 120 367 234 0 83 chrX 130672866 130673011 -31926919 - HAL1b LINE L1 -879 469 337 2777 96 60 10 chrX 130673214 130673248 -31926682 - MLT2A1 LTR ERVL -8 436 405 439 89 13 13 chrX 130673248 130673327 -31926603 + (TA)n Simple_repeat Simple_repeat 1 79 0 2777 96 60 10 chrX 130673327 130673707 -31926223 - MLT2A1 LTR ERVL -39 405 1 218 357 16 33 chrX 130673821 130674003 -31925927 - L2 LINE L2 0 3313 3135 295 164 0 0 chrX 130674011 130674066 -31925864 - MLT2B1 LTR ERVL -2 518 464 222 37 0 0 chrX 130674076 130674103 -31925827 + (TG)n Simple_repeat Simple_repeat 2 28 0 8376 242 9 7 chrX 130674108 130676167 -31923763 - L1PA13 LINE L1 -1668 5129 3067 1803 192 117 8 chrX 130676171 130676557 -31923373 - MSTA LTR MaLR 0 428 1 2912 190 9 4 chrX 130676557 130677089 -31922841 - MSTA-int LTR MaLR 0 1651 1117 335 78 39 0 chrX 130677068 130677119 -31922811 - L1PA10 LINE L1 -23 6145 6093 * 1192 160 38 5 chrX 130677119 130677331 -31922599 - MER50-int LTR ERV1 -4807 1139 921 2696 141 5 5 chrX 130677333 130677758 -31922172 - MER50-int LTR ERV1 -818 4062 3638 * 5338 189 83 57 chrX 130677756 130679221 -31920709 - MER50-int LTR ERV1 -5373 1832 330 1290 189 93 11 chrX 130679222 130679492 -31920438 - MSTA LTR MaLR -136 292 1 4915 225 42 12 chrX 130679494 130681309 -31918621 - L1PA13 LINE L1 -3732 3065 1187 622 215 15 15 chrX 130681300 130681435 -31918495 - L1PA13 LINE L1 -6225 562 428 * 514 260 0 0 chrX 130681438 130681542 -31918388 - L1PA13 LINE L1 -6682 105 2 674 206 61 12 chrX 130681546 130681711 -31918219 - MLT1B LTR MaLR -217 173 1 1269 228 39 7 chrX 130681711 130681996 -31917934 - ERVL-D LTR ERVL -3062 2702 2409 1956 226 10 0 chrX 130682004 130682397 -31917533 - ERVL-D LTR ERVL -3517 2247 1851 312 214 0 0 chrX 130682399 130682464 -31917466 + HERVL LTR ERVL 1787 1844 -3810 2027 238 9 16 chrX 130682465 130682906 -31917024 - ERVL-D LTR ERVL -3944 1820 1383 1763 281 60 10 chrX 130682897 130683509 -31916421 - ERVL-D LTR ERVL -5100 664 22 * 889 253 108 48 chrX 130683604 130683956 -31915974 - MLT2D LTR ERVL -41 373 1 741 327 28 46 chrX 130683999 130684367 -31915563 - L2 LINE L2 -232 3081 2721 460 291 0 0 chrX 130684375 130684485 -31915445 - MER81 DNA DNA -1 113 4 367 221 14 107 chrX 130684605 130684745 -31915185 - L2 LINE L2 -838 2476 2350 302 321 36 0 chrX 130684758 130684898 -31915032 - L1ME3A LINE L1 -93 6077 5933 5361 206 29 42 chrX 130684918 130686423 -31913507 + L1 LINE L1 3 1487 -4065 * 6185 224 23 35 chrX 130686421 130686992 -31912938 + L1 LINE L1 3123 3700 -2628 2010 96 4 0 chrX 130686992 130687264 -31912666 - AluSp SINE Alu -13 300 28 6185 224 23 35 chrX 130687264 130687675 -31912255 + L1 LINE L1 3700 4115 -2213 1802 126 56 28 chrX 130687675 130687960 -31911970 + AluSg SINE Alu 6 298 -12 6185 224 23 35 chrX 130687960 130689114 -31910816 + L1 LINE L1 4115 5191 -1137 * 6621 38 1 0 chrX 130689112 130689910 -31910020 - L1PA4 LINE L1 0 6155 5357 291 235 0 15 chrX 130690409 130690477 -31909453 + MER107 DNA MER1_type 75 141 -56 31 68 0 0 chrX 130690659 130690718 -31909212 + AT_rich Low_complexity Low_complexity 1 59 0 5114 196 34 23 chrX 130690723 130692678 -31907252 + HERVL LTR ERVL 1075 3124 -2561 396 298 15 71 chrX 130892693 130892905 -31707025 - MIR3 SINE MIR -5 203 1 1222 262 50 45 chrX 130893035 130893500 -31706430 + MER110A LTR ERV1 2 468 0 1279 162 6 95 chrX 130893644 130894037 -31705893 + MER31B LTR ERV1 1 466 0 237 260 67 48 chrX 130894977 130895081 -31704849 + MIR SINE MIR 113 218 -44 275 327 36 18 chrX 130896692 130896802 -31703128 - L2 LINE L2 -5 3267 3156 193 360 36 18 chrX 130896953 130897064 -31702866 + MIR SINE MIR 3 115 -147 245 276 92 20 chrX 130897149 130897247 -31702683 - MIR SINE MIR -92 170 66 238 107 36 0 chrX 130898623 130898679 -31701251 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2651 30 0 0 chrX 130899308 130899610 -31700320 + AluY SINE Alu 1 302 -9 23 0 0 0 chrX 130899689 130899712 -31700218 + AT_rich Low_complexity Low_complexity 1 23 0 353 342 6 25 chrX 130899862 130900020 -31699910 - L2 LINE L2 0 3313 3159 1161 153 5 19 chrX 130900113 130900328 -31699602 - L1PA15 LINE L1 -2 6163 5952 334 151 0 0 chrX 130900588 130900641 -31699289 + THE1B LTR MaLR 312 364 0 1541 264 52 52 chrX 130900648 130901190 -31698740 - L1PA13 LINE L1 -5101 1686 1145 1915 191 20 6 chrX 130901247 130901607 -31698323 + MLT1A1 LTR MaLR 1 428 0 233 331 72 36 chrX 130902316 130902455 -31697475 - MER117 DNA MER1_type -16 181 38 405 349 69 14 chrX 130902686 130902904 -31697026 + MIR SINE MIR 4 233 -29 255 321 150 7 chrX 130905598 130905738 -31694192 + MIR SINE MIR 4 163 -99 1973 47 0 4 chrX 130906040 130906274 -31693656 - AluY SINE Alu -15 296 64 1826 189 59 33 chrX 130907434 130907962 -31691968 + MLT2A2 LTR ERVL 3 554 0 1998 201 40 20 chrX 130908730 130909183 -31690747 - MLT1C LTR MaLR -4 463 2 183 129 0 0 chrX 130909636 130909667 -31690263 + (CA)n Simple_repeat Simple_repeat 2 32 0 1003 275 4 0 chrX 130909715 130909966 -31689964 + MIR SINE MIR 1 252 -10 244 324 38 38 chrX 130910773 130911011 -31688919 + HAL1 LINE L1 1421 1658 -849 231 250 8 125 chrX 130911362 130911482 -31688448 + MIR SINE MIR 77 182 -80 497 231 154 37 chrX 130912186 130912459 -31687471 + L1ME4a LINE L1 5816 6120 -1 437 123 27 0 chrX 130913734 130913807 -31686123 + MER116 DNA Mariner 6 80 0 3989 79 7 7 chrX 130915673 130916228 -31683702 - L1PA7 LINE L1 -1449 4697 4143 7003 54 9 1 chrX 130916228 130917667 -31682263 + L1PA7 LINE L1 4708 6153 -1 5296 134 23 18 chrX 130918446 130919317 -31680613 - Tigger1 DNA MER2_type -955 1463 589 1401 181 19 22 chrX 130919325 130919596 -31680334 - Tigger1 DNA MER2_type -2083 335 66 5157 160 11 10 chrX 130919606 130920431 -31679499 - L1PB4 LINE L1 0 6156 5325 2209 71 10 0 chrX 130920431 130920726 -31679204 - L1PA13 LINE L1 -4 6159 5862 5157 160 11 10 chrX 130920726 130920985 -31678945 - L1PB4 LINE L1 -831 5325 5068 3884 206 13 2 chrX 130921003 130921872 -31678058 + L1PB4 LINE L1 4204 5081 -1065 400 178 41 0 chrX 130921872 130921945 -31677985 - Tigger1 DNA MER2_type -2342 76 1 21 0 0 0 chrX 130922342 130922363 -31677567 + AT_rich Low_complexity Low_complexity 1 21 0 1413 264 30 28 chrX 130922733 130923241 -31676689 + HAL1b LINE L1 252 760 -588 567 327 184 38 chrX 130925678 130926342 -31673588 + L3 LINE CR1 107 867 -710 727 292 117 87 chrX 130926344 130926788 -31673142 + L3 LINE CR1 1020 1484 -93 2234 98 3 0 chrX 130926788 130927073 -31672857 + AluSp SINE Alu 10 295 -18 727 292 117 87 chrX 130927073 130927169 -31672761 + L3 LINE CR1 1484 1576 -1 198 296 157 35 chrX 130927516 130927631 -31672299 - L2 LINE L2 -10 3262 3134 188 313 0 0 chrX 130928005 130928053 -31671877 + L2 LINE L2 3264 3311 -2 35 54 0 0 chrX 130928200 130928256 -31671674 + AT_rich Low_complexity Low_complexity 1 56 0 1512 222 43 120 chrX 130931291 130931891 -31668039 + MLT2B3 LTR ERVL 1 554 0 520 243 158 13 chrX 130932493 130932645 -31667285 - MER5A DNA MER1_type 0 189 16 2337 239 97 32 chrX 130932647 130933775 -31666155 - L1ME1 LINE L1 0 6961 5759 3581 248 68 63 chrX 130933811 130935474 -31664456 - L1ME1 LINE L1 -1372 5569 3890 5560 117 67 3 chrX 130935474 130936531 -31663399 - L1PA15 LINE L1 -1 6164 5081 3581 248 68 63 chrX 130936531 130937050 -31662880 - L1ME1 LINE L1 -3051 3890 3375 427 203 157 12 chrX 130937076 130937278 -31662652 - L1ME1 LINE L1 -3942 2999 2854 669 324 77 15 chrX 130937330 130937735 -31662195 - L1ME1 LINE L1 -5977 446 17 445 155 0 19 chrX 130937790 130937893 -31662037 + Charlie5 DNA MER1_type 2386 2486 -126 494 258 42 63 chrX 130939313 130939743 -31660187 - L1MD2 LINE L1 -58 7984 6244 3061 125 14 10 chrX 130939778 130940265 -31659665 - L1PA15 LINE L1 -6 6159 5671 586 338 31 7 chrX 130940752 130941042 -31658888 + L1MEc LINE L1 36 332 -6064 1815 241 64 22 chrX 130941128 130941581 -31658349 - MER70A LTR ERVL 0 472 1 250 239 15 0 chrX 130941650 130941717 -31658213 + L1MEc LINE L1 690 757 -5448 1319 222 43 9 chrX 130941774 130942121 -31657809 + L1M4 LINE L1 4549 4907 -1239 3624 175 25 90 chrX 130942122 130943093 -31656837 - L1MA9 LINE L1 -11 6301 5394 300 212 15 0 chrX 130943103 130943169 -31656761 + L1M4 LINE L1 4885 4951 -1195 1903 213 34 5 chrX 130943194 130943579 -31656351 + MSTD LTR MaLR 1 396 0 7309 228 38 31 chrX 130943581 130945254 -31654676 + MSTD-int LTR MaLR 2 1688 -47 6506 161 41 2 chrX 130945254 130946437 -31653493 + Tigger3b DNA MER2_type 2 1231 0 7309 228 38 31 chrX 130946437 130946486 -31653444 + MSTD-int LTR MaLR 1688 1735 0 233 208 0 0 chrX 130946495 130946548 -31653382 + L1MEc LINE L1 2614 2666 -3549 * 6300 204 38 42 chrX 130946524 130946608 -31653322 + L1MA9 LINE L1 3718 3801 -2580 2135 104 7 24 chrX 130946608 130946906 -31653024 + AluSq SINE Alu 1 293 -20 6300 204 38 42 chrX 130946906 130947135 -31652795 + L1MA9 LINE L1 3801 4029 -2352 2243 119 0 0 chrX 130947135 130947446 -31652484 + AluY SINE Alu 1 311 0 6300 204 38 42 chrX 130947446 130949283 -31650647 + L1MA9 LINE L1 4029 5862 -519 196 75 25 25 chrX 130949335 130949375 -31650555 + (TA)n Simple_repeat Simple_repeat 2 41 0 2621 166 17 15 chrX 130949375 130949898 -31650032 + L1MA9 LINE L1 5851 6374 -7 2182 179 34 45 chrX 130952333 130952801 -31647129 - LTR24 LTR ERV1 0 467 5 539 199 44 15 chrX 130952818 130952954 -31646976 - LTR24-int LTR ERV1 0 5123 4984 847 328 104 39 chrX 130953440 130953900 -31646030 + L1M2 LINE L1 5 494 -6355 311 268 0 63 chrX 130954082 130954209 -31645721 + L1PA16 LINE L1 2189 2307 -5267 1289 280 32 124 chrX 130954899 130955554 -31644376 + L1PA16 LINE L1 2203 2790 -4784 * 18479 184 37 17 chrX 130955548 130955636 -31644294 + L1MA2 LINE L1 8 93 -7472 402 21 0 0 chrX 130955636 130955683 -31644247 + (CA)n Simple_repeat Simple_repeat 2 48 0 18479 184 37 17 chrX 130955683 130960541 -31639389 + L1MA2 LINE L1 93 5058 -2507 6701 133 11 10 chrX 130960538 130962111 -31637819 + L1MA2 LINE L1 6143 7718 -5 * 10249 199 27 87 chrX 130962127 130963666 -31636264 + L1PA16 LINE L1 2791 4421 -3183 360 64 0 0 chrX 130963666 130963713 -31636217 + (CA)n Simple_repeat Simple_repeat 2 48 0 10249 199 27 87 chrX 130963713 130964904 -31635026 + L1PA16 LINE L1 4421 5682 -1922 507 17 0 0 chrX 130964904 130964964 -31634966 + (CA)n Simple_repeat Simple_repeat 2 61 0 10249 199 27 87 chrX 130964964 130967452 -31632478 + L1PA16 LINE L1 5682 7602 -2 504 275 154 12 chrX 130967457 130967704 -31632226 - Charlie1a DNA MER1_type -1089 366 85 300 275 12 12 chrX 130967853 130967933 -31631997 - Charlie1a DNA MER1_type -1375 80 1 617 338 60 34 chrX 130968125 130968622 -31631308 - PRIMA41-int LTR ERV1 -599 6523 6014 21 36 0 0 chrX 130969480 130969508 -31630422 + AT_rich Low_complexity Low_complexity 1 28 0 374 370 27 31 chrX 130969536 130969950 -31629980 - PRIMA41-int LTR ERV1 -2094 2553 2142 319 304 9 15 chrX 130970508 130970649 -31629281 - PRIMA41-int LTR ERV1 -2941 4815 3989 281 282 46 46 chrX 130971819 130971950 -31627980 - PRIMA41-int LTR ERV1 -4967 3432 3302 25611 146 13 15 chrX 130973610 130978557 -31621373 - L1PA8A LINE L1 -5 6441 1486 2161 89 17 20 chrX 130978557 130978859 -31621071 - AluSc SINE Alu -8 301 1 25611 146 13 15 chrX 130978859 130979069 -31620861 - L1PA8A LINE L1 -4960 1486 1277 195 100 0 0 chrX 130979069 130979099 -31620831 + (TTG)n Simple_repeat Simple_repeat 1 30 0 25611 146 13 15 chrX 130979099 130980325 -31619605 - L1PA8A LINE L1 -5169 1277 3 17589 175 22 11 chrX 130980329 130985423 -31614507 - L1 LINE L1 -2399 5166 12 2153 110 0 0 chrX 130985753 130986035 -31613895 + AluSq SINE Alu 1 282 -31 724 45 33 59 chrX 130986040 130986563 -31613367 + (TA)n Simple_repeat Simple_repeat 1 509 0 231 255 0 43 chrX 130986564 130986658 -31613272 + L1MC4 LINE L1 6617 6706 -1336 290 399 17 6 chrX 130987447 130987625 -31612305 + L2 LINE L2 2887 3066 -206 268 217 17 0 chrX 130987722 130987782 -31612148 - MER94 DNA DNA -55 79 19 346 242 16 8 chrX 130987926 130988050 -31611880 + (TATATG)n Simple_repeat Simple_repeat 6 130 0 319 315 0 0 chrX 130988051 130988140 -31611790 + L1MC4 LINE L1 6615 6703 -1339 301 250 0 54 chrX 130988094 130988186 -31611744 - L1MC4 LINE L1 -1339 6703 6617 * 221 196 18 0 chrX 130988186 130988242 -31611688 + (TA)n Simple_repeat Simple_repeat 1 57 0 2033 139 0 0 chrX 130989196 130989520 -31610410 + L1MA6 LINE L1 5838 6161 -139 7135 160 38 18 chrX 130990424 130992211 -31607719 + L1PA13 LINE L1 4030 5830 -333 2550 120 5 5 chrX 130992211 130992586 -31607344 - THE1C LTR MaLR 0 375 1 7135 160 38 18 chrX 130992586 130992927 -31607003 + L1PA13 LINE L1 5830 6163 0 1159 249 7 75 chrX 130993366 130993807 -31606123 - MLT2B1 LTR ERVL -103 397 4 233 373 0 0 chrX 130993990 130994057 -31605873 + L2 LINE L2 3154 3220 -52 761 115 0 0 chrX 130994770 130994883 -31605047 + AluSq/x SINE Alu 1 113 -200 7730 170 42 18 chrX 130995993 130999958 -31599972 + L1PBa LINE L1 8 3153 -3709 1805 124 0 38 chrX 130999958 131000224 -31599706 + AluSx SINE Alu 41 296 -16 7730 170 42 18 chrX 131000224 131000678 -31599252 + L1PBa LINE L1 3153 3595 -3267 1418 93 5 23 chrX 131000678 131000893 -31599037 + L1PB1 LINE L1 5938 6148 -3 282 29 0 0 chrX 131000910 131000945 -31598985 + (CA)n Simple_repeat Simple_repeat 2 36 0 2223 73 59 0 chrX 131001659 131001945 -31597985 - AluSp SINE Alu -10 303 1 210 306 0 0 chrX 131005729 131005853 -31594077 + (TA)n Simple_repeat Simple_repeat 1 124 0 333 0 0 0 chrX 131006077 131006114 -31593816 + (TG)n Simple_repeat Simple_repeat 1 37 0 272 240 135 0 chrX 131006413 131006517 -31593413 - MIR SINE MIR -27 235 118 338 316 68 8 chrX 131007561 131007678 -31592252 + L2 LINE L2 3149 3272 0 397 269 121 0 chrX 131008893 131009034 -31590896 - MIR SINE MIR 0 262 105 347 200 0 0 chrX 131009347 131009407 -31590523 - MIR SINE MIR -65 143 84 219 134 10 82 chrX 131009881 131009978 -31589952 + GA-rich Low_complexity Low_complexity 4 93 0 1678 300 16 22 chrX 131010948 131011346 -31588584 - MLT1H1 LTR MaLR -8 547 151 7483 29 2 0 chrX 131011346 131012671 -31587259 + L1PA4 LINE L1 4821 6147 -8 1678 300 16 22 chrX 131012671 131012816 -31587114 - MLT1H1 LTR MaLR -404 151 7 766 274 90 0 chrX 131012854 131013088 -31586842 + MIR SINE MIR 8 262 0 637 311 19 113 chrX 131013093 131013626 -31586304 + L2 LINE L2 2770 3263 -9 720 262 58 0 chrX 131014261 131014452 -31585478 + L2 LINE L2 2469 2670 -644 295 302 66 36 chrX 131014469 131014637 -31585293 - MIR3 SINE MIR -58 150 11 2469 70 0 3 chrX 131014971 131015273 -31584657 + AluY SINE Alu 2 302 -9 494 224 184 8 chrX 131015448 131015573 -31584357 + MER5A DNA MER1_type 14 160 -29 2269 110 0 22 chrX 131017021 131017338 -31582592 + AluSx SINE Alu 1 310 -2 348 248 48 60 chrX 131018247 131018469 -31581461 + MER61E LTR ERV1 11 224 -484 977 148 72 158 chrX 131018517 131018922 -31581008 + LTR25 LTR ERV1 415 784 -10 441 212 133 9 chrX 131018928 131019041 -31580889 + MIR SINE MIR 18 144 -64 240 35 0 0 chrX 131019051 131019080 -31580850 + (ATG)n Simple_repeat Simple_repeat 2 30 0 432 296 101 35 chrX 131019086 131019285 -31580645 - MIR SINE MIR -10 252 41 851 267 35 12 chrX 131019552 131019807 -31580123 - MIR SINE MIR 0 262 2 192 40 0 0 chrX 131020354 131020379 -31579551 + (GA)n Simple_repeat Simple_repeat 2 26 0 212 0 0 35 chrX 131020382 131020411 -31579519 + (GGA)n Simple_repeat Simple_repeat 3 30 0 362 298 164 12 chrX 131020606 131020777 -31579153 + MIR SINE MIR 53 249 -13 2478 73 0 0 chrX 131020786 131021088 -31578842 + AluY SINE Alu 1 302 -9 866 237 69 8 chrX 131021656 131021901 -31578029 + MER58 DNA MER1_type 1 260 -2160 330 148 33 0 chrX 131022197 131022258 -31577672 + MER58 DNA MER1_type 2357 2419 -1 31 44 0 0 chrX 131022965 131023010 -31576920 + AT_rich Low_complexity Low_complexity 1 45 0 507 349 73 14 chrX 131023510 131023728 -31576202 + MIR SINE MIR 32 262 0 203 139 23 0 chrX 131023729 131023760 -31576170 + CT-rich Low_complexity Low_complexity 3 37 -9 2190 97 0 30 chrX 131023760 131024060 -31575870 - AluSc SINE Alu -18 291 1 203 139 23 0 chrX 131024060 131024071 -31575859 + CT-rich Low_complexity Low_complexity 37 46 0 1458 170 65 78 chrX 131024275 131024432 -31575498 + MLT1A1 LTR MaLR 1 159 -206 1719 188 0 10 chrX 131024432 131024763 -31575167 + AluJb SINE Alu 1 328 0 1458 170 65 78 chrX 131024763 131024974 -31574956 + MLT1A1 LTR MaLR 159 365 0 450 263 0 10 chrX 131025374 131025473 -31574457 - L2 LINE L2 -19 3294 3197 180 387 0 13 chrX 131025699 131025774 -31574156 - MIR3 SINE MIR -122 86 13 2425 65 0 3 chrX 131026180 131026474 -31573456 + AluY SINE Alu 1 293 -18 17693 142 18 16 chrX 131027365 131029175 -31570755 - L1PA10 LINE L1 0 6483 4677 2305 106 0 3 chrX 131029175 131029478 -31570452 - AluSg SINE Alu -8 302 1 17693 142 18 16 chrX 131029478 131030551 -31569379 - L1PA10 LINE L1 -1806 4677 3607 2298 59 7 3 chrX 131030551 131030838 -31569092 - AluY SINE Alu -23 288 1 17693 142 18 16 chrX 131030838 131034262 -31565668 - L1PA10 LINE L1 -2876 3607 120 2226 95 0 0 chrX 131034449 131034753 -31565177 + AluY SINE Alu 1 304 0 423 0 0 0 chrX 131034834 131034881 -31565049 + (TG)n Simple_repeat Simple_repeat 1 47 0 201 352 19 88 chrX 131037415 131037574 -31562356 + MER5A DNA MER1_type 10 157 -32 5458 192 52 30 chrX 131037578 131038996 -31560934 + Charlie1a DNA MER1_type 7 1454 -1 183 308 0 0 chrX 131039541 131039593 -31560337 - L2 LINE L2 -8 3264 3213 303 306 157 0 chrX 131039975 131040096 -31559834 + MIR SINE MIR 122 261 -1 381 294 0 11 chrX 131040357 131040449 -31559481 - MIR SINE MIR -123 139 49 186 301 57 95 chrX 131041890 131042152 -31557778 + L2 LINE L2 2808 3059 -213 3479 117 92 117 chrX 131042687 131044078 -31555852 + pTR5 LTR ERV1 6 714 0 2274 165 50 18 chrX 131045040 131045403 -31554527 - LOR1b LTR ERV1 0 461 80 1773 79 136 57 chrX 131045403 131045683 -31554247 + AluSc SINE Alu 1 302 -7 2274 165 50 18 chrX 131045683 131045762 -31554168 - LOR1b LTR ERV1 -381 80 5 1981 115 0 49 chrX 131045802 131046128 -31553802 + AluSx SINE Alu 1 312 0 2625 29 7 0 chrX 131047367 131047676 -31552254 - AluYb8 SINE Alu -7 311 1 242 291 99 57 chrX 131048623 131048764 -31551166 - MIR SINE MIR -67 195 49 328 371 0 0 chrX 131048909 131049006 -31550924 + L2 LINE L2 3175 3271 -1 32 57 0 0 chrX 131049163 131049216 -31550714 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chrX 131049544 131049566 -31550364 + AT_rich Low_complexity Low_complexity 1 22 0 189 94 0 0 chrX 131049688 131049720 -31550210 + (T)n Simple_repeat Simple_repeat 1 32 0 251 274 94 65 chrX 131049974 131050174 -31549756 - MIR SINE MIR -6 202 1 2670 126 19 19 chrX 131050522 131050950 -31548980 + MSTC LTR MaLR 1 428 0 383 257 71 36 chrX 131051106 131051246 -31548684 + MIR3 SINE MIR 38 182 -26 1375 279 90 8 chrX 131052024 131052522 -31547408 - MLT1H1 LTR MaLR 0 555 17 2426 82 0 0 chrX 131052523 131052827 -31547103 - AluY SINE Alu -7 304 1 2117 137 127 3 chrX 131053401 131053780 -31546150 - MSTB LTR MaLR 0 426 1 296 314 63 34 chrX 131053780 131054019 -31545911 - MLT1-int LTR MaLR -836 535 290 185 217 0 22 chrX 131054100 131054146 -31545784 + MIR SINE MIR 124 168 -94 * 492 289 67 21 chrX 131054125 131054319 -31545611 - MIR SINE MIR 0 262 60 303 28 0 0 chrX 131054840 131054876 -31545054 + (CA)n Simple_repeat Simple_repeat 2 37 0 404 238 190 22 chrX 131054894 131055163 -31544767 - L1ME4a LINE L1 -226 5895 5582 365 291 38 54 chrX 131056691 131057007 -31542923 + L1ME4a LINE L1 5764 6074 -47 2509 84 0 0 chrX 131057098 131057409 -31542521 + AluY SINE Alu 1 311 0 7802 178 28 30 chrX 131058515 131060187 -31539743 - MER52A LTR ERV1 0 1755 1 2110 142 0 22 chrX 131060674 131060991 -31538939 - AluSx SINE Alu 0 312 3 625 294 28 0 chrX 131061201 131061378 -31538552 - MIR SINE MIR -19 243 62 1607 268 49 13 chrX 131062594 131063390 -31536540 - L2 LINE L2 -3 3310 2490 1045 231 84 4 chrX 131063484 131063722 -31536208 - MIR SINE MIR 0 262 6 2016 92 29 29 chrX 131064254 131064570 -31535360 + AluY SINE Alu 1 316 0 671 306 32 14 chrX 131064630 131064849 -31535081 + L3 LINE CR1 930 1152 -425 423 281 228 6 chrX 131064883 131065064 -31534866 - MIR SINE MIR -2 260 39 511 314 13 0 chrX 131065120 131065276 -31534654 - MIR SINE MIR -51 211 54 204 309 0 0 chrX 131065270 131065325 -31534605 + L3 LINE CR1 1170 1224 -353 * 358 313 35 0 chrX 131065458 131065573 -31534357 - L2 LINE L2 0 3313 3195 437 0 19 0 chrX 131065728 131065781 -31534149 + (CA)n Simple_repeat Simple_repeat 1 54 0 278 315 36 63 chrX 131065871 131065982 -31533948 - L2 LINE L2 -2 3270 3163 698 358 72 24 chrX 131066114 131066528 -31533402 - L3 LINE CR1 -53 1524 1091 240 250 18 18 chrX 131067576 131067632 -31532298 - MER5A DNA MER1_type -70 119 64 694 221 25 12 chrX 131067689 131067852 -31532078 - MER58B DNA MER1_type 0 341 177 197 250 0 0 chrX 131068513 131068557 -31531373 + MIR3 SINE MIR 165 208 0 383 130 0 109 chrX 131069927 131070019 -31529911 - L1MA9 LINE L1 0 6312 6231 464 254 51 0 chrX 131071441 131071559 -31528371 + MIR SINE MIR 32 155 -107 228 67 0 0 chrX 131071625 131071655 -31528275 + (GGGAA)n Simple_repeat Simple_repeat 2 31 0 303 28 0 0 chrX 131071662 131071698 -31528232 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 222 271 0 0 chrX 131071705 131071753 -31528177 + L2 LINE L2 3213 3260 -12 2240 131 19 25 chrX 131071840 131072206 -31527724 - THE1B LTR MaLR 0 364 1 287 296 98 30 chrX 131072352 131072484 -31527446 + L2 LINE L2 3171 3311 -2 461 343 27 14 chrX 131072609 131072755 -31527175 - L2 LINE L2 0 3272 3125 1847 197 62 58 chrX 131073095 131073518 -31526412 - MLT1D LTR MaLR 0 505 78 1835 214 0 8 chrX 131073518 131073882 -31526048 - MLT1A1 LTR MaLR -2 363 3 1847 197 62 58 chrX 131073882 131073961 -31525969 - MLT1D LTR MaLR -427 78 1 181 302 0 16 chrX 131074143 131074206 -31525724 + L2 LINE L2 1773 1834 -1480 236 316 90 15 chrX 131074208 131074341 -31525589 + L2 LINE L2 2035 2177 -1137 241 307 0 27 chrX 131074366 131074441 -31525489 - L2 LINE L2 0 3313 3241 567 349 59 57 chrX 131074466 131074868 -31525062 + L2 LINE L2 2533 2940 -332 252 0 0 0 chrX 131074868 131074896 -31525034 + (CA)n Simple_repeat Simple_repeat 2 29 0 567 349 59 57 chrX 131074896 131075230 -31524700 + L2 LINE L2 2940 3272 0 215 250 0 0 chrX 131076290 131076334 -31523596 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 183 232 0 0 chrX 131076862 131076918 -31523012 + CT-rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chrX 131078076 131078098 -31521832 + AT_rich Low_complexity Low_complexity 1 22 0 317 378 66 73 chrX 131078425 131078848 -31521082 - L2 LINE L2 -17 3255 2836 490 294 150 5 chrX 131079388 131079575 -31520355 - MIR SINE MIR -12 250 37 278 310 89 49 chrX 131079832 131080035 -31519895 + MIR SINE MIR 37 247 -15 2111 102 3 3 chrX 131080924 131081208 -31518722 + AluSg SINE Alu 1 284 -26 212 0 36 0 chrX 131081212 131081240 -31518690 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3335 156 15 7 chrX 131081481 131082958 -31516972 - L1PB1 LINE L1 -6 6145 4540 6590 216 31 2 chrX 131082968 131084600 -31515330 + L1PB1 LINE L1 2849 4528 -1618 2451 110 64 0 chrX 131084594 131084985 -31514945 - L1PB1 LINE L1 -46 6105 5690 * 1262 74 11 0 chrX 131084980 131085156 -31514774 + L1PB1 LINE L1 5502 5679 -472 * 194 293 263 0 chrX 131085283 131085382 -31514548 - L2 LINE L2 0 3313 3189 284 371 115 38 chrX 131085406 131086549 -31513381 + L2 LINE L2 2053 3287 -26 1319 226 16 55 chrX 131088908 131089040 -31510890 + MLT1A1 LTR MaLR 1 137 -228 2340 71 0 36 chrX 131089040 131089348 -31510582 - AluY SINE Alu -14 297 1 1319 226 16 55 chrX 131089348 131089595 -31510335 + MLT1A1 LTR MaLR 137 365 0 1477 178 113 37 chrX 131094539 131094972 -31504958 - MER31B LTR ERV1 0 466 1 2347 238 44 36 chrX 131095042 131095461 -31504469 - L1M4c LINE L1 -4516 1797 1383 2280 109 0 13 chrX 131095461 131095774 -31504156 - AluSg SINE Alu -1 309 1 2347 238 44 36 chrX 131095774 131096272 -31503658 - L1M4c LINE L1 -4930 1383 1117 2321 93 0 3 chrX 131096272 131096573 -31503357 - AluY SINE Alu -11 300 1 2347 238 44 36 chrX 131096573 131096917 -31503013 - L1M4c LINE L1 -5196 1117 777 33 0 0 0 chrX 131096919 131096952 -31502978 + AT_rich Low_complexity Low_complexity 1 33 0 329 169 56 0 chrX 131097046 131097117 -31502813 - L1M3c LINE L1 -5240 901 827 520 350 61 37 chrX 131097468 131097845 -31502085 - L1M3c LINE L1 -5754 387 2 240 204 0 0 chrX 131097949 131097993 -31501937 - L2 LINE L2 -9 3304 3261 458 258 63 67 chrX 131098244 131098543 -31501387 - MLT1I LTR MaLR -10 399 102 299 27 0 0 chrX 131098543 131098580 -31501350 - L1PA5 LINE L1 -270 5884 5848 857 53 0 18 chrX 131098581 131098680 -31501250 + L1PA5 LINE L1 6041 6139 -15 276 53 0 0 chrX 131098680 131098718 -31501212 + (TA)n Simple_repeat Simple_repeat 2 39 0 857 53 0 18 chrX 131098718 131098732 -31501198 + L1PA5 LINE L1 6139 6152 -2 180 394 14 0 chrX 131099033 131099104 -31500826 + L2 LINE L2 2995 3066 -206 250 236 56 0 chrX 131099180 131099252 -31500678 - MIR SINE MIR -70 192 117 494 268 0 22 chrX 131099523 131099661 -31500269 + LTR16C LTR ERVL 354 488 -3 311 378 49 49 chrX 131100879 131101226 -31498704 - L2 LINE L2 -8 3264 2918 212 192 19 39 chrX 131101759 131101811 -31498119 + L2 LINE L2 3222 3272 0 237 341 78 39 chrX 131101901 131102030 -31497900 - L2 LINE L2 -3 3269 3136 228 250 53 40 chrX 131102632 131102708 -31497222 + MIR3 SINE MIR 129 205 -3 262 226 45 40 chrX 131103715 131103892 -31496038 + (TA)n Simple_repeat Simple_repeat 2 179 0 237 251 58 23 chrX 131103886 131104232 -31495698 + (TATG)n Simple_repeat Simple_repeat 1 358 0 * 357 107 77 12 chrX 131104242 131104411 -31495519 + (TA)n Simple_repeat Simple_repeat 1 180 0 429 157 72 12 chrX 131104420 131104586 -31495344 + (TATAA)n Simple_repeat Simple_repeat 3 178 0 31 44 0 0 chrX 131104587 131104632 -31495298 + AT_rich Low_complexity Low_complexity 1 45 0 473 121 61 0 chrX 131104635 131104800 -31495130 + (TA)n Simple_repeat Simple_repeat 1 175 0 338 248 67 0 chrX 131105091 131105196 -31494734 - MER94 DNA DNA -19 115 4 29670 106 12 62 chrX 131105293 131111773 -31488157 - L1PA7 LINE L1 -2 6152 5 415 307 16 16 chrX 131112530 131112657 -31487273 - MER5A DNA MER1_type -56 133 7 234 0 0 0 chrX 131112792 131112818 -31487112 + (A)n Simple_repeat Simple_repeat 1 26 0 614 294 19 34 chrX 131113542 131113774 -31486156 + MIR SINE MIR 24 249 -13 229 207 11 138 chrX 131114437 131114524 -31485406 - MIR SINE MIR -79 183 108 433 319 92 22 chrX 131114534 131114763 -31485167 - MIR SINE MIR -14 248 4 503 262 140 43 chrX 131114813 131114977 -31484953 - MER5A DNA MER1_type 0 189 10 279 321 54 9 chrX 131115206 131115318 -31484612 + MER5A DNA MER1_type 36 152 -37 2395 146 14 74 chrX 131115319 131115806 -31484124 - LTR32 LTR ERVL 0 471 14 264 0 0 0 chrX 131115860 131115892 -31484038 - MER58A DNA MER1_type -17 207 176 309 177 97 0 chrX 131115893 131115955 -31483975 - MER58A DNA MER1_type -39 68 1 1847 167 0 0 chrX 131116239 131116527 -31483403 + AluJb SINE Alu 12 299 -13 620 282 79 15 chrX 131118877 131119079 -31480851 + MIR SINE MIR 47 261 -1 818 267 69 16 chrX 131119132 131119379 -31480551 + MIR SINE MIR 3 262 0 896 304 82 25 chrX 131120301 131120869 -31479061 - L2 LINE L2 -9 3304 2702 692 298 0 11 chrX 131121277 131121468 -31478462 + MER5A DNA MER1_type 1 189 0 231 315 47 47 chrX 131121483 131121610 -31478320 + L2 LINE L2 2932 3058 -214 244 329 0 0 chrX 131121981 131122051 -31477879 + MER5A DNA MER1_type 64 133 -56 7721 20 16 0 chrX 131122401 131123716 -31476214 - L1PA3 LINE L1 0 6155 4832 424 304 120 54 chrX 131123832 131124224 -31475706 + L1ME3A LINE L1 520 937 -5133 3040 265 131 42 chrX 131124274 131125238 -31474692 + L1ME3A LINE L1 2904 3781 -2299 548 55 0 0 chrX 131125238 131125311 -31474619 - L1PA5 LINE L1 0 6154 6082 3040 265 131 42 chrX 131125311 131126312 -31473618 + L1ME3A LINE L1 3781 5069 -1011 7535 30 0 2 chrX 131126312 131127543 -31472387 - L1PA3 LINE L1 -2 6153 4924 3040 265 131 42 chrX 131127543 131127673 -31472257 + L1ME3A LINE L1 5069 5186 -894 639 223 36 72 chrX 131127690 131127885 -31472045 + L1ME3A LINE L1 5787 5973 -131 2331 100 0 0 chrX 131127885 131128194 -31471736 - AluSx SINE Alu -3 309 1 639 223 36 72 chrX 131128194 131128249 -31471681 + L1ME3A LINE L1 5973 6028 -76 362 244 0 56 chrX 131128887 131128977 -31470953 - MER5A DNA MER1_type 0 189 105 189 154 0 0 chrX 131132214 131132253 -31467677 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 246 358 0 0 chrX 131132269 131132364 -31467566 + A-rich Low_complexity Low_complexity 2 96 0 214 317 119 30 chrX 131133914 131134015 -31465915 + L2 LINE L2 3155 3264 -8 582 278 187 14 chrX 131134237 131134446 -31465484 + MIR SINE MIR 13 257 -5 1360 175 5 0 chrX 131135195 131135418 -31464512 - MER58A DNA MER1_type 0 224 1 359 286 12 0 chrX 131135519 131135603 -31464327 + MIR3 SINE MIR 70 154 -54 1825 171 16 29 chrX 131135605 131135980 -31463950 - L1MA9 LINE L1 -95 6217 5848 226 225 0 0 chrX 131136111 131136151 -31463779 + polypurine Low_complexity Low_complexity 1 40 0 626 249 76 34 chrX 131136944 131136962 -31462968 - L1ME3A LINE L1 -221 5949 5932 455 271 69 45 chrX 131136962 131137181 -31462749 - L1MB4 LINE L1 -253 5927 5700 1957 149 30 0 chrX 131137181 131137516 -31462414 + L1MC1 LINE L1 5989 6333 0 455 271 69 45 chrX 131137516 131137543 -31462387 - L1MB4 LINE L1 -480 5700 5675 1197 292 54 20 chrX 131137552 131138075 -31461855 - L2 LINE L2 -21 3292 2743 417 363 24 14 chrX 131138110 131138399 -31461531 - L1MB4 LINE L1 -488 5674 5383 2340 231 71 57 chrX 131138628 131139119 -31460811 - L1ME2 LINE L1 -3 6161 5679 1433 214 44 16 chrX 131139119 131139483 -31460447 + MLT1A2 LTR MaLR 1 374 0 2340 231 71 57 chrX 131139483 131139976 -31459954 - L1ME2 LINE L1 -485 5679 5162 988 126 0 70 chrX 131139980 131140179 -31459751 - L1MA9 LINE L1 0 6312 6128 * 7052 54 7 0 chrX 131140178 131141093 -31458837 + L1PA7 LINE L1 5229 6149 -5 426 262 19 0 chrX 131141601 131141708 -31458222 + L1ME LINE L1 6 114 -5956 3254 104 26 18 chrX 131141710 131142218 -31457712 - L1MA4A LINE L1 -226 6077 5566 1238 134 28 0 chrX 131142218 131142425 -31457505 + L1MA4 LINE L1 6071 6293 -7 2062 155 0 9 chrX 131142437 131142786 -31457144 - L1MA9 LINE L1 -173 6139 5794 261 0 0 0 chrX 131142786 131142815 -31457115 + (TG)n Simple_repeat Simple_repeat 2 30 0 4058 228 65 6 chrX 131142819 131144016 -31455914 - L1 LINE L1 -2819 4287 3019 1242 251 40 23 chrX 131144039 131144393 -31455537 - L1 LINE L1 -6660 370 11 1577 270 82 90 chrX 131144413 131145517 -31454413 - L1M4 LINE L1 -981 5165 4054 2513 50 0 0 chrX 131145517 131145816 -31454114 + AluY SINE Alu 1 299 -12 1577 270 82 90 chrX 131145816 131146705 -31453225 - L1M4 LINE L1 -2092 4054 3195 3868 53 41 0 chrX 131146705 131147197 -31452733 + L1PA5 LINE L1 5634 6145 -9 1577 270 82 90 chrX 131147197 131147879 -31452051 - L1M4 LINE L1 -2951 3195 2509 387 105 0 0 chrX 131148585 131148642 -31451288 + (CA)n Simple_repeat Simple_repeat 2 58 0 945 206 0 24 chrX 131148942 131149145 -31450785 - L1MA5 LINE L1 -272 6028 5830 379 200 0 0 chrX 131149145 131149222 -31450708 + L1MA5 LINE L1 6221 6300 0 21 36 0 0 chrX 131149256 131149284 -31450646 + AT_rich Low_complexity Low_complexity 1 28 0 372 317 169 0 chrX 131149758 131149900 -31450030 - L2 LINE L2 -5 3267 3102 793 166 53 6 chrX 131149967 131150136 -31449794 - MER53 DNA DNA -3 186 10 509 309 7 0 chrX 131150269 131150421 -31449509 + L2 LINE L2 2684 2836 -478 336 314 109 6 chrX 131150564 131150720 -31449210 + L1ME LINE L1 5458 5629 -492 2280 68 19 0 chrX 131152073 131152381 -31447549 + L1PA8 LINE L1 5853 6166 -6 212 194 0 0 chrX 131152408 131152444 -31447486 + (TA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chrX 131152684 131152708 -31447222 + AT_rich Low_complexity Low_complexity 1 24 0 5550 141 17 27 chrX 131153610 131154542 -31445388 - MER49 LTR ERV1 0 923 1 348 250 0 0 chrX 131154851 131154915 -31445015 + MER45A DNA AcHobo 2 65 -113 25 31 0 0 chrX 131154936 131154968 -31444962 + AT_rich Low_complexity Low_complexity 1 32 0 4509 50 0 4 chrX 131154968 131155529 -31444401 - L1PA8A LINE L1 -31 6100 5542 1760 84 0 0 chrX 131155527 131155778 -31444152 + L1P LINE L1 5028 5278 -868 * 418 262 9 0 chrX 131155784 131155891 -31444039 + MER45A DNA AcHobo 71 178 0 3857 124 39 20 chrX 131156070 131156623 -31443307 - L1PB3 LINE L1 0 6154 5586 2359 88 0 0 chrX 131156623 131156918 -31443012 - AluSx SINE Alu -17 295 1 3857 124 39 20 chrX 131156918 131157011 -31442919 - L1PB3 LINE L1 -568 5586 5496 599 303 40 94 chrX 131157312 131157577 -31442353 + L2 LINE L2 2940 3183 -89 2450 64 7 0 chrX 131157577 131157875 -31442055 - AluSp SINE Alu -13 300 1 599 303 40 94 chrX 131157875 131157959 -31441971 + L2 LINE L2 3183 3270 -2 26 0 0 0 chrX 131158007 131158033 -31441897 + AT_rich Low_complexity Low_complexity 1 26 0 194 257 95 40 chrX 131158151 131158225 -31441705 - MIR3 SINE MIR -46 162 85 405 236 55 55 chrX 131158613 131158740 -31441190 + L2 LINE L2 3187 3313 0 2230 81 0 7 chrX 131159046 131159330 -31440600 + AluY SINE Alu 1 282 -29 864 338 117 27 chrX 131160161 131160964 -31438966 + L2 LINE L2 1696 2570 -744 387 0 0 0 chrX 131161540 131161583 -31438347 + (A)n Simple_repeat Simple_repeat 1 43 0 752 301 35 19 chrX 131162321 131162577 -31437353 - MIR SINE MIR 0 262 3 790 220 6 6 chrX 131162690 131162858 -31437072 + MER3 DNA MER1_type 42 209 0 706 256 76 31 chrX 131163437 131163660 -31436270 - MIR SINE MIR 0 262 30 187 247 97 32 chrX 131164009 131164102 -31435828 - MIR SINE MIR -56 206 108 367 269 14 28 chrX 131164518 131164538 -31435392 - L1MA10 LINE L1 0 6334 6315 2847 222 56 17 chrX 131164538 131165289 -31434641 - L1ME2 LINE L1 -9 6155 5376 213 159 0 0 chrX 131366388 131366432 -31233498 + CT-rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chrX 131367407 131367428 -31232502 + (GGAGA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chrX 131369070 131369093 -31230837 + AT_rich Low_complexity Low_complexity 1 23 0 2703 19 0 0 chrX 131369215 131369526 -31230404 + AluYb8 SINE Alu 1 311 -7 1946 108 7 4 chrX 131369588 131369867 -31230063 + AluSq SINE Alu 1 280 -33 5436 166 13 18 chrX 131370008 131371890 -31228040 + L1MB8 LINE L1 4252 6128 -50 2121 73 38 3 chrX 131371890 131372178 -31227752 + AluSx SINE Alu 5 302 -10 5436 166 13 18 chrX 131372178 131372229 -31227701 + L1MB8 LINE L1 6128 6178 0 2056 94 7 0 chrX 131372238 131372525 -31227405 + AluSg1 SINE Alu 1 289 -20 548 278 77 26 chrX 131372714 131372908 -31227022 + L2 LINE L2 3110 3313 0 266 228 20 20 chrX 131373683 131373784 -31226146 + A-rich Low_complexity Low_complexity 3 103 0 533 108 121 0 chrX 131373800 131373883 -31226047 + L1MB3 LINE L1 6035 6127 -56 342 127 0 36 chrX 131373884 131373939 -31225991 + 7SK RNA RNA 1 53 -140 313 245 118 46 chrX 131374012 131374249 -31225681 + L1ME4a LINE L1 5850 6103 -18 2197 104 0 3 chrX 131374255 131374554 -31225376 - AluSx SINE Alu -14 298 1 232 98 0 10 chrX 131375309 131375543 -31224387 + AluSg SINE Alu 24 294 -8 22 0 0 0 chrX 131375708 131375730 -31224200 + AT_rich Low_complexity Low_complexity 1 22 0 218 265 0 0 chrX 131376347 131376396 -31223534 + (TG)n Simple_repeat Simple_repeat 1 49 0 489 250 46 46 chrX 131377111 131377263 -31222667 - MIR SINE MIR -46 216 65 506 293 111 107 chrX 131377346 131377774 -31222156 + L1ME4a LINE L1 4744 5176 -970 650 62 0 10 chrX 131377774 131377871 -31222059 + L1MA2 LINE L1 6209 6304 0 506 293 111 107 chrX 131377871 131378029 -31221901 + L1ME4a LINE L1 5176 5332 -814 659 68 43 77 chrX 131378030 131378147 -31221783 + L1MA9 LINE L1 6110 6222 -90 580 225 17 0 chrX 131378148 131378258 -31221672 + MER8 DNA MER2_type 45 156 -83 451 154 0 13 chrX 131378258 131378329 -31221601 + Tigger2 DNA MER2_type 1 70 -2648 265 224 103 0 chrX 131378329 131378387 -31221543 - MER2 DNA MER2_type 0 345 282 * 809 214 16 44 chrX 131378364 131378546 -31221384 - MER8 DNA MER2_type -62 177 1 328 177 0 76 chrX 131378591 131378670 -31221260 - Tigger2 DNA MER2_type -2645 73 1 701 252 55 58 chrX 131378695 131379040 -31220890 + L1ME4a LINE L1 5350 5693 -428 1795 114 29 0 chrX 131379040 131379312 -31220618 - AluSq SINE Alu -1 312 33 303 98 0 0 chrX 131379412 131379453 -31220477 + Alu SINE Alu 252 292 -10 3989 124 33 12 chrX 131379453 131379967 -31219963 - L1MB4 LINE L1 -3 6177 5644 1755 202 39 31 chrX 131379967 131380354 -31219576 + MLT1B LTR MaLR 1 390 0 3989 124 33 12 chrX 131380354 131380498 -31219432 - L1MB4 LINE L1 -536 5644 5505 467 250 24 30 chrX 131380555 131380723 -31219207 + L1ME4a LINE L1 5744 5910 -211 290 232 0 0 chrX 131380784 131380853 -31219077 + L1ME4a LINE L1 6049 6117 -4 2346 68 0 3 chrX 131380881 131381191 -31218739 + AluY SINE Alu 1 309 -2 337 117 143 0 chrX 131381360 131381437 -31218493 - L1ME4a LINE L1 -2 6119 6032 249 271 82 48 chrX 131381453 131381660 -31218270 - L1ME4a LINE L1 -61 6060 5847 792 279 23 26 chrX 131381663 131381683 -31218247 - L1ME4a LINE L1 -323 5798 5779 1740 128 21 18 chrX 131381683 131381987 -31217943 - AluSx SINE Alu 0 305 1 792 279 23 26 chrX 131381987 131382230 -31217700 - L1ME4a LINE L1 -342 5779 5535 1647 166 0 36 chrX 131382288 131382590 -31217340 + AluJb SINE Alu 1 291 -21 1786 45 27 0 chrX 131382763 131382987 -31216943 - L1PA10 LINE L1 -3 6165 5936 2295 54 27 3 chrX 131382987 131383281 -31216649 + L1P4 LINE L1 5350 5650 -518 1616 91 5 0 chrX 131383281 131383502 -31216428 - AluY SINE Alu -10 301 80 1362 92 0 0 chrX 131383602 131383786 -31216144 + AluSg/x SINE Alu 116 299 -11 5648 45 6 0 chrX 131383795 131384468 -31215462 + L1PA8 LINE L1 5489 6165 -7 599 227 189 29 chrX 131384908 131385122 -31214808 + MIR SINE MIR 16 254 -8 746 281 117 23 chrX 131385927 131386132 -31213798 + L1ME4a LINE L1 5346 5530 -591 2088 109 0 20 chrX 131386132 131386434 -31213496 - AluSx SINE Alu -16 296 1 746 281 117 23 chrX 131386434 131386716 -31213214 + L1ME4a LINE L1 5530 5882 -239 1616 102 0 0 chrX 131386865 131387081 -31212849 + AluSx SINE Alu 1 216 -96 699 198 100 52 chrX 131387128 131387457 -31212473 - L1ME4a LINE L1 -44 6077 5733 611 265 36 36 chrX 131387664 131387883 -31212047 - L1ME4a LINE L1 -406 5715 5497 235 350 31 21 chrX 131388365 131388462 -31211468 + MIR3 SINE MIR 62 159 -49 1942 136 13 0 chrX 131388755 131389063 -31210867 + AluSx SINE Alu 1 312 0 401 154 0 13 chrX 131389076 131389154 -31210776 + GA-rich Low_complexity Low_complexity 4 80 0 2316 83 0 6 chrX 131389647 131389961 -31209969 - AluSx SINE Alu 0 312 1 486 109 11 98 chrX 131390114 131390185 -31209745 + MER51A LTR ERV1 470 534 -100 2025 111 0 4 chrX 131390185 131390493 -31209437 + AluSc SINE Alu 1 307 0 486 109 11 98 chrX 131390493 131390512 -31209418 + MER51A LTR ERV1 534 553 -81 291 327 50 31 chrX 131391020 131391179 -31208751 + L2 LINE L2 3097 3258 -14 548 278 21 0 chrX 131391757 131391901 -31208029 - MIR SINE MIR -6 256 110 760 239 103 68 chrX 131392044 131392278 -31207652 + MIR SINE MIR 19 260 -2 1565 113 28 77 chrX 131393716 131394043 -31205887 + L1MA8 LINE L1 5978 6288 -3 2073 109 3 10 chrX 131394210 131394346 -31205584 + AluSx SINE Alu 1 136 -176 2276 71 0 0 chrX 131394346 131394663 -31205267 + AluY SINE Alu 1 317 0 2073 109 3 10 chrX 131394663 131394829 -31205101 + AluSx SINE Alu 136 302 -10 2006 166 29 9 chrX 131395818 131396167 -31203763 + MLT1A1 LTR MaLR 10 365 0 1951 151 0 0 chrX 131397009 131397320 -31202610 + AluJb SINE Alu 1 311 -1 2353 80 3 3 chrX 131397346 131397658 -31202272 + AluSp SINE Alu 2 313 0 2022 106 0 26 chrX 131398104 131398429 -31201501 - AluSq SINE Alu 0 313 1 373 262 93 9 chrX 131398902 131399009 -31200921 + MIR3 SINE MIR 89 204 -4 200 298 105 32 chrX 131399047 131399171 -31200759 - L2 LINE L2 -5 3308 3176 1933 136 13 0 chrX 131400234 131400536 -31199394 + AluSx SINE Alu 1 306 -6 1982 94 45 7 chrX 131401065 131401351 -31198579 - AluSx SINE Alu -9 303 7 186 171 0 0 chrX 131401559 131401600 -31198330 + (CA)n Simple_repeat Simple_repeat 2 42 0 203 302 10 21 chrX 131401624 131401720 -31198210 + CT-rich Low_complexity Low_complexity 4 98 0 425 276 16 57 chrX 131404176 131404299 -31195631 - MIR3 SINE MIR -10 198 81 208 245 0 0 chrX 131405340 131405389 -31194541 + (CA)n Simple_repeat Simple_repeat 1 49 0 264 200 0 0 chrX 131406036 131406091 -31193839 + (CA)n Simple_repeat Simple_repeat 2 56 0 2124 100 3 0 chrX 131406665 131406964 -31192966 + AluSx SINE Alu 1 300 -12 1763 107 72 0 chrX 131408170 131408432 -31191498 + AluSx SINE Alu 1 281 -31 387 105 0 0 chrX 131408433 131408490 -31191440 + (GA)n Simple_repeat Simple_repeat 2 58 0 248 341 73 8 chrX 131408490 131408613 -31191317 - MARNA DNA Mariner -414 172 42 297 89 0 0 chrX 131408637 131408682 -31191248 + (TG)n Simple_repeat Simple_repeat 2 46 0 588 263 49 25 chrX 131409118 131409294 -31190636 + MIR SINE MIR 2 185 -62 2023 121 0 0 chrX 131409771 131410069 -31189861 + AluSx SINE Alu 1 298 -14 201 234 156 16 chrX 131410349 131410413 -31189517 - MIR SINE MIR -12 250 178 243 297 14 65 chrX 131410551 131410689 -31189241 - L2 LINE L2 -2 3311 3181 376 253 101 84 chrX 131410804 131411101 -31188829 + L1ME LINE L1 5523 5824 -297 2275 95 3 0 chrX 131411193 131411499 -31188431 + AluSx SINE Alu 1 307 -5 463 0 90 0 chrX 131411520 131411587 -31188343 + CT-rich Low_complexity Low_complexity 1 73 0 5658 60 20 52 chrX 131411589 131412664 -31187266 + SVA Other Other 1 866 -520 6059 68 7 64 chrX 131412681 131413877 -31186053 + SVA Other Other 432 1386 0 243 282 0 32 chrX 131413929 131414053 -31185877 + GA-rich Low_complexity Low_complexity 3 122 0 225 264 35 11 chrX 131414974 131415061 -31184869 + CT-rich Low_complexity Low_complexity 4 92 0 2058 112 3 13 chrX 131415156 131415484 -31184446 - AluSc SINE Alu 0 309 1 198 71 0 0 chrX 131415484 131415512 -31184418 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 39672 54 2 1 chrX 131415512 131421206 -31178724 - L1PA5 LINE L1 -18 6136 433 1008 138 0 35 chrX 131421208 131421382 -31178548 - FRAM SINE Alu -15 161 1 21 0 0 0 chrX 131421714 131421735 -31178195 + AT_rich Low_complexity Low_complexity 1 21 0 2065 132 20 3 chrX 131421822 131422158 -31177772 + AluSx SINE Alu 1 341 0 275 293 0 0 chrX 131422377 131422459 -31177471 + HAL1 LINE L1 2071 2152 -355 289 335 43 6 chrX 131422516 131422677 -31177253 + HAL1b LINE L1 746 912 -436 1815 171 7 0 chrX 131422719 131423012 -31176918 + AluJo SINE Alu 1 295 -17 1231 245 57 18 chrX 131423227 131423667 -31176263 + L2 LINE L2 2608 3062 -251 2261 103 0 0 chrX 131423667 131423959 -31175971 - AluSx SINE Alu -15 297 6 395 204 0 80 chrX 131423964 131424042 -31175888 + L2 LINE L2 3210 3278 -35 1785 172 32 71 chrX 131424042 131424448 -31175482 + MLT1B LTR MaLR 1 390 0 395 204 0 80 chrX 131424448 131424482 -31175448 + L2 LINE L2 3278 3313 0 216 67 0 0 chrX 131424634 131424664 -31175266 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1775 161 0 14 chrX 131424672 131424952 -31174978 - AluJo SINE Alu -36 276 1 960 163 25 0 chrX 131424988 131425148 -31174782 - FAM SINE Alu -10 165 2 915 38 9 0 chrX 131425176 131425281 -31174649 + AluSp SINE Alu 38 143 -170 207 0 0 0 chrX 131425301 131425324 -31174606 + (A)n Simple_repeat Simple_repeat 1 23 0 797 202 181 21 chrX 131425380 131425568 -31174362 + MER20 DNA MER1_type 2 219 0 2510 81 0 0 chrX 131425696 131425994 -31173936 - AluSx SINE Alu -12 300 3 2276 93 7 7 chrX 131426977 131427267 -31172663 - AluSq SINE Alu -23 290 1 1585 170 0 66 chrX 131427425 131427742 -31172188 + AluJo SINE Alu 1 296 -16 252 0 0 0 chrX 131428028 131428056 -31171874 + (CA)n Simple_repeat Simple_repeat 2 29 0 373 115 0 49 chrX 131428204 131428265 -31171665 - L1PA8A LINE L1 0 6131 6074 1818 49 0 0 chrX 131428265 131428488 -31171442 + L1PA8A LINE L1 5732 5954 -177 2512 90 0 0 chrX 131428865 131429165 -31170765 - AluSx SINE Alu -12 300 1 1858 146 59 0 chrX 131429196 131429483 -31170447 + AluJb SINE Alu 1 304 -8 856 210 6 0 chrX 131429557 131429724 -31170206 - MLT1B LTR MaLR 0 390 223 218 338 0 0 chrX 131430687 131430767 -31169163 + L2 LINE L2 1437 1516 -1798 351 360 95 13 chrX 131430778 131430933 -31168997 + L2 LINE L2 2184 2325 -989 2036 207 99 0 chrX 131430933 131431406 -31168524 - MLT2B1 LTR ERVL 0 520 1 351 360 95 13 chrX 131431406 131431556 -31168374 + L2 LINE L2 2325 2514 -800 2223 114 7 0 chrX 131431560 131431857 -31168073 - AluSx SINE Alu -13 299 1 1866 118 44 11 chrX 131431909 131432210 -31167720 + AluSg SINE Alu 1 310 0 1590 166 7 22 chrX 131432234 131432505 -31167425 - AluJb SINE Alu -45 267 1 1822 135 17 40 chrX 131432553 131432850 -31167080 - AluJb SINE Alu -22 290 1 250 241 78 69 chrX 131432974 131433090 -31166840 - HAL1b LINE L1 -415 933 817 6767 74 42 39 chrX 131434715 131434907 -31165023 + MER41B-int LTR ERV1 4943 5133 -813 2353 84 0 7 chrX 131434907 131435205 -31164725 + AluY SINE Alu 1 296 -15 6767 74 42 39 chrX 131435205 131435283 -31164647 + MER41B-int LTR ERV1 5133 5209 -737 1820 142 0 0 chrX 131435283 131435536 -31164394 + AluSx SINE Alu 43 295 -17 6767 74 42 39 chrX 131435536 131436240 -31163690 + MER41B-int LTR ERV1 5209 5921 -25 2102 113 0 0 chrX 131436242 131436551 -31163379 + AluSx SINE Alu 1 309 0 3919 103 7 0 chrX 131436606 131437149 -31162781 + MER41B LTR ERV1 1 547 -88 949 190 0 0 chrX 131437917 131438080 -31161850 + FRAM SINE Alu 3 165 -11 3899 131 86 16 chrX 131438094 131438807 -31161123 + LTR1B LTR ERV1 1 785 0 1640 86 36 0 chrX 131439473 131439694 -31160236 - MER30 DNA MER1_type 0 230 2 435 179 27 0 chrX 131439710 131439822 -31160108 - L1MA4A LINE L1 0 6303 6189 4722 127 24 7 chrX 131439822 131440580 -31159350 - L1PB4 LINE L1 -98 6058 5288 2231 52 42 14 chrX 131441118 131441404 -31158526 - AluY SINE Alu -17 294 1 1965 113 10 33 chrX 131441417 131441717 -31158213 - AluSx SINE Alu -17 295 3 2139 116 0 3 chrX 131442211 131442519 -31157411 - AluSx SINE Alu 0 307 1 1962 130 108 12 chrX 131442536 131443052 -31156878 - MER51A LTR ERV1 0 634 1 458 181 57 129 chrX 131443551 131443620 -31156310 + L1M4 LINE L1 2133 2205 -3941 1951 121 14 24 chrX 131443620 131443909 -31156021 + AluJb SINE Alu 6 291 -21 458 181 57 129 chrX 131443909 131444049 -31155881 + L1M4 LINE L1 2205 2327 -3819 1547 200 200 73 chrX 131444058 131444539 -31155391 - MLT1E2 LTR MaLR 0 626 85 24 32 0 0 chrX 131444569 131444600 -31155330 + AT_rich Low_complexity Low_complexity 1 31 0 761 143 29 29 chrX 131444600 131444740 -31155190 - L1MA8 LINE L1 -10 6281 6142 3142 205 51 58 chrX 131444740 131445087 -31154843 - L1M4 LINE L1 -1219 4927 4579 1100 151 0 0 chrX 131445087 131445253 -31154677 - FRAM SINE Alu 0 166 1 3142 205 51 58 chrX 131445253 131445882 -31154048 - L1M4 LINE L1 -1567 4579 3958 1704 133 7 11 chrX 131445884 131446170 -31153760 - L1MB3 LINE L1 -2 6181 5897 799 149 156 0 chrX 131446202 131446343 -31153587 - FAM SINE Alu -12 163 1 2261 118 0 3 chrX 131446377 131446690 -31153240 + AluSx SINE Alu 1 312 0 1397 181 18 65 chrX 131446722 131446872 -31153058 + L1MEc LINE L1 2108 2263 -3952 1957 144 3 0 chrX 131446872 131447164 -31152766 + AluJo SINE Alu 14 306 -6 1397 181 18 65 chrX 131447164 131447284 -31152646 + L1MEc LINE L1 2263 2387 -3828 1539 159 12 87 chrX 131447284 131447617 -31152313 + AluJo SINE Alu 1 308 -4 1397 181 18 65 chrX 131447617 131447830 -31152100 + L1MEc LINE L1 2387 2528 -3687 1262 233 7 22 chrX 131447830 131448101 -31151829 - MLT1E LTR MaLR 0 593 327 1373 217 3 3 chrX 131448110 131448428 -31151502 + L1MEc LINE L1 2685 3002 -3213 2258 131 0 0 chrX 131448428 131448740 -31151190 + AluSx SINE Alu 1 312 0 1229 171 44 22 chrX 131448748 131449022 -31150908 + L1MB8 LINE L1 5899 6178 0 2731 208 28 15 chrX 131449037 131449685 -31150245 + L1MEc LINE L1 3800 4455 -1760 216 0 0 0 chrX 131449695 131449719 -31150211 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3354 158 78 42 chrX 131449845 131450207 -31149723 + L1MC3 LINE L1 6885 7232 -553 1888 124 41 75 chrX 131450207 131450595 -31149335 + THE1C LTR MaLR 1 375 0 3354 158 78 42 chrX 131450595 131450953 -31148977 + L1MC3 LINE L1 7232 7631 -154 1787 263 59 61 chrX 131450962 131451841 -31148089 + L1M4 LINE L1 3744 4623 -1523 1989 142 7 0 chrX 131451841 131452122 -31147808 + AluSx SINE Alu 1 283 -29 1787 263 59 61 chrX 131452122 131452257 -31147673 + L1M4 LINE L1 4623 4757 -1389 774 150 0 30 chrX 131452257 131452390 -31147540 + FLAM_A SINE Alu 5 133 0 1787 263 59 61 chrX 131452390 131452527 -31147403 + L1M4 LINE L1 4757 4894 -1252 594 246 79 52 chrX 131452542 131452619 -31147311 + L1MDa LINE L1 1567 1640 -4900 2178 107 0 0 chrX 131452619 131452930 -31147000 + AluY SINE Alu 1 311 0 594 246 79 52 chrX 131452930 131453103 -31146827 + L1MDa LINE L1 1640 1825 -4715 455 161 0 102 chrX 131453103 131453172 -31146758 + L1MB3 LINE L1 6033 6087 -96 869 135 0 15 chrX 131453172 131453305 -31146625 - FLAM_C SINE Alu 0 133 3 455 161 0 102 chrX 131453305 131453353 -31146577 + L1MB3 LINE L1 6087 6138 -45 2419 88 0 0 chrX 131453358 131453653 -31146277 + AluSg SINE Alu 1 295 -15 263 54 54 36 chrX 131453692 131453748 -31146182 + L1MB3 LINE L1 6127 6183 0 341 179 0 134 chrX 131453788 131453855 -31146075 + L1MDa LINE L1 1868 1916 -4805 2223 135 0 0 chrX 131453855 131454167 -31145763 - AluSx SINE Alu 0 312 1 341 179 0 134 chrX 131454167 131454211 -31145719 + L1MDa LINE L1 1916 1964 -4757 3009 176 41 27 chrX 131454216 131454847 -31145083 + L1MB8 LINE L1 5523 6162 -16 2151 130 0 0 chrX 131454854 131455154 -31144776 - AluSx SINE Alu -8 304 5 2058 157 0 0 chrX 131455214 131455513 -31144417 - AluSx SINE Alu -13 299 1 245 195 85 110 chrX 131455531 131455668 -31144262 + L1MDa LINE L1 1911 2045 -4495 2414 68 10 0 chrX 131455668 131455960 -31143970 + AluY SINE Alu 1 295 -16 245 195 85 110 chrX 131455960 131455986 -31143944 + L1MDa LINE L1 2045 2070 -4470 32 67 0 0 chrX 131456006 131456066 -31143864 + AT_rich Low_complexity Low_complexity 1 60 0 1700 185 0 29 chrX 131456103 131456411 -31143519 - AluJo SINE Alu -13 299 1 1893 180 3 0 chrX 131456543 131456854 -31143076 - AluJo SINE Alu 0 312 1 1579 168 0 15 chrX 131457070 131457332 -31142598 + AluJo SINE Alu 39 296 -16 841 136 0 50 chrX 131457511 131457651 -31142279 - FLAM_C SINE Alu 0 133 1 484 158 95 11 chrX 131457673 131457768 -31142162 + FLAM_A SINE Alu 13 115 -27 31 20 0 20 chrX 131457770 131457790 -31142140 + AT_rich Low_complexity Low_complexity 1 20 -28 1920 162 0 3 chrX 131457790 131458087 -31141843 + AluJo SINE Alu 3 298 -14 31 20 0 20 chrX 131458087 131458115 -31141815 + AT_rich Low_complexity Low_complexity 20 48 0 2047 155 0 3 chrX 131458164 131458473 -31141457 - AluJb SINE Alu -4 308 1 599 248 69 30 chrX 131458667 131458869 -31141061 + MER63A DNA MER1_type 1 210 0 2477 82 3 0 chrX 131458942 131459246 -31140684 + AluSq SINE Alu 1 305 -8 356 292 88 9 chrX 131459252 131459478 -31140452 + L1PB2 LINE L1 5682 5925 -226 * 1991 160 43 15 chrX 131459283 131459677 -31140253 + L1MB8 LINE L1 5723 6127 -51 1740 162 13 32 chrX 131459683 131459997 -31139933 + AluJb SINE Alu 1 308 -4 839 158 0 22 chrX 131460006 131460145 -31139785 + FLAM_C SINE Alu 1 136 -7 1618 155 180 6 chrX 131460150 131460443 -31139487 + L1MD1 LINE L1 5826 6193 -49 2312 94 3 3 chrX 131460443 131460741 -31139189 - AluSx SINE Alu -10 302 5 1618 155 180 6 chrX 131460741 131460802 -31139128 + L1MD1 LINE L1 6193 6242 0 2238 97 3 3 chrX 131461213 131461513 -31138417 + AluSx SINE Alu 2 301 -11 1038 273 123 74 chrX 131461530 131462049 -31137881 + L2 LINE L2 2354 2846 -426 1478 168 32 52 chrX 131462049 131462162 -31137768 - AluJb SINE Alu -8 304 190 2259 96 3 20 chrX 131462162 131462463 -31137467 - AluSq SINE Alu -17 296 1 1478 168 32 52 chrX 131462463 131462659 -31137271 - AluJb SINE Alu -122 190 1 1038 273 123 74 chrX 131462659 131462680 -31137250 + L2 LINE L2 2846 2865 -407 2250 96 20 0 chrX 131462680 131462983 -31136947 - AluSx SINE Alu -3 309 1 1038 273 123 74 chrX 131462983 131463076 -31136854 + L2 LINE L2 2865 3030 -242 800 165 24 0 chrX 131463534 131463661 -31136269 + MER2 DNA MER2_type 3 132 -213 474 178 0 0 chrX 131463675 131463765 -31136165 + (CTTTA)n Simple_repeat Simple_repeat 2 91 0 2134 97 14 7 chrX 131463765 131464055 -31135875 - AluSx SINE Alu -20 292 1 549 37 37 24 chrX 131464059 131464141 -31135789 + MER2 DNA MER2_type 128 210 -135 830 132 7 37 chrX 131464199 131464335 -31135595 - FLAM_C SINE Alu -1 132 1 365 199 18 193 chrX 131464335 131464367 -31135563 - MIR SINE MIR -111 151 115 1981 129 0 61 chrX 131464367 131464693 -31135237 + AluSx SINE Alu 3 308 -4 365 199 18 193 chrX 131464693 131464734 -31135196 - MIR SINE MIR -147 115 69 2165 99 3 3 chrX 131464734 131465016 -31134914 + AluSx SINE Alu 1 282 -30 365 199 18 193 chrX 131465016 131465107 -31134823 - MIR SINE MIR -193 69 15 579 307 121 30 chrX 131465310 131465772 -31134158 - L2 LINE L2 -821 2493 1990 497 195 55 39 chrX 131465776 131465904 -31134026 + L2 LINE L2 3178 3307 -6 429 316 32 32 chrX 131465886 131465915 -31134015 - L2 LINE L2 -1307 2007 1979 * 2253 80 0 14 chrX 131465915 131466503 -31133427 + AluSq SINE Alu 1 283 -30 2508 63 3 0 chrX 131466051 131466503 -31133427 + AluY SINE Alu 1 495 0 358 24 0 0 chrX 131466503 131466545 -31133385 + (GAAAA)n Simple_repeat Simple_repeat 3 155 0 429 316 32 32 chrX 131466545 131466704 -31133226 - L2 LINE L2 -1333 1981 1818 2426 75 0 10 chrX 131466707 131467012 -31132918 + AluY SINE Alu 1 302 -9 24 0 0 0 chrX 131467040 131467064 -31132866 + AT_rich Low_complexity Low_complexity 1 24 0 2301 107 0 0 chrX 131467064 131467364 -31132566 + AluSx SINE Alu 1 300 -12 277 258 30 15 chrX 131467549 131467615 -31132315 + L2 LINE L2 3186 3252 -20 363 114 29 0 chrX 131469112 131469182 -31130748 - L1PA16 LINE L1 0 6166 6095 2401 86 3 0 chrX 131469520 131469823 -31130107 + AluY SINE Alu 1 304 -7 260 214 12 60 chrX 131470039 131470123 -31129807 + MIR SINE MIR 183 262 0 201 281 167 52 chrX 131470212 131470308 -31129622 - MIR SINE MIR -148 114 8 725 121 30 132 chrX 131470995 131471051 -31128879 - MER106B DNA MER1_type 0 236 176 2543 66 0 0 chrX 131471051 131471353 -31128577 - AluY SINE Alu -9 302 1 725 121 30 132 chrX 131471353 131471565 -31128365 - MER106B DNA MER1_type -60 176 1 848 263 133 57 chrX 131471723 131472246 -31127684 - L2 LINE L2 -4 3309 2708 1411 179 102 21 chrX 131472246 131472531 -31127399 + AluJb SINE Alu 1 308 -4 848 263 133 57 chrX 131472531 131472610 -31127320 - L2 LINE L2 -605 2708 2636 2126 88 46 0 chrX 131473146 131473429 -31126501 + AluSq SINE Alu 2 297 -16 2247 104 0 29 chrX 131473957 131474266 -31125664 - AluSx SINE Alu -12 300 1 285 202 163 74 chrX 131475301 131475504 -31124426 - L1MC4a LINE L1 -1735 6073 5853 2385 102 0 9 chrX 131475543 131475858 -31124072 + AluSx SINE Alu 1 312 0 1926 135 0 0 chrX 131476139 131476399 -31123531 + AluSx SINE Alu 1 260 -52 2153 132 0 10 chrX 131476777 131477081 -31122849 + AluSx SINE Alu 4 304 -8 2650 57 0 0 chrX 131477088 131477388 -31122542 + AluY SINE Alu 1 300 -11 252 305 43 43 chrX 131477574 131477715 -31122215 + L2 LINE L2 1853 1993 -1321 348 310 140 43 chrX 131477730 131477796 -31122134 + L2 LINE L2 2141 2199 -1115 2552 39 0 3 chrX 131477796 131478082 -31121848 - AluY SINE Alu -10 301 17 348 310 140 43 chrX 131478082 131478593 -31121337 + L2 LINE L2 2199 2774 -540 440 251 72 36 chrX 131478866 131479033 -31120897 + L2 LINE L2 3141 3313 0 891 105 0 0 chrX 131479558 131479672 -31120258 - AluJb SINE Alu -194 118 5 1955 140 0 13 chrX 131479961 131480261 -31119669 + AluJo SINE Alu 14 309 -3 2628 50 3 0 chrX 131480441 131480743 -31119187 + AluY SINE Alu 1 303 -8 788 119 17 17 chrX 131481644 131481751 -31118179 + AluJb SINE Alu 2 111 -201 2103 152 0 0 chrX 131481751 131482048 -31117882 + AluSx SINE Alu 1 297 -15 1820 168 26 7 chrX 131484257 131484561 -31115369 - AluJo SINE Alu -2 310 1 1952 139 21 0 chrX 131485139 131485419 -31114511 - AluSx SINE Alu -26 286 1 269 272 62 0 chrX 131485716 131485806 -31114124 - MIR SINE MIR -112 96 25 1525 162 17 50 chrX 131485808 131486105 -31113825 - AluJo SINE Alu -15 297 11 2493 73 3 0 chrX 131486128 131486429 -31113501 - AluY SINE Alu -9 302 1 188 300 0 0 chrX 131486545 131486585 -31113345 + L2 LINE L2 3264 3303 -10 220 241 181 12 chrX 131487538 131487621 -31112309 + L3 LINE CR1 1153 1249 -328 205 315 215 0 chrX 131488434 131488583 -31111347 + L3 LINE CR1 1099 1279 -298 299 178 137 0 chrX 131488641 131488714 -31111216 + L3 LINE CR1 1486 1568 -9 2301 118 0 0 chrX 131489346 131489651 -31110279 - AluSx SINE Alu -7 305 1 317 318 156 17 chrX 131489746 131489919 -31110011 + MIR3 SINE MIR 2 198 -10 2430 61 13 29 chrX 131489943 131490255 -31109675 + AluY SINE Alu 1 307 -4 2638 37 3 0 chrX 131490318 131490615 -31109315 + AluY SINE Alu 1 298 -13 665 131 0 0 chrX 131490803 131490902 -31109028 + AluSg/x SINE Alu 204 302 -10 362 215 20 47 chrX 131494181 131494490 -31105440 + C-rich Low_complexity Low_complexity 1 300 0 2468 90 0 0 chrX 131495153 131495465 -31104465 + AluSx SINE Alu 1 312 0 790 285 24 37 chrX 131497069 131497315 -31102615 + MIR SINE MIR 20 262 0 2541 77 3 0 chrX 131498161 131498514 -31101416 + AluSx SINE Alu 1 354 0 235 250 31 0 chrX 131499310 131499374 -31100556 - L1MC4 LINE L1 -67 7975 7910 732 240 98 2 chrX 131499535 131499738 -31100192 - MIR SINE MIR -19 243 23 302 234 117 36 chrX 131500221 131500332 -31099598 + L2 LINE L2 2941 3060 -212 2161 122 10 0 chrX 131500797 131501100 -31098830 + AluSq SINE Alu 1 306 -7 245 275 43 0 chrX 131501697 131501766 -31098164 - MIR SINE MIR -98 164 93 185 224 0 71 chrX 131501925 131502023 -31097907 - L3b LINE CR1 -383 1200 1110 763 202 0 0 chrX 131502541 131502660 -31097270 + FLAM_C SINE Alu 1 119 -14 210 37 0 0 chrX 131502661 131502688 -31097242 + (CA)n Simple_repeat Simple_repeat 2 28 0 543 254 40 64 chrX 131502797 131502970 -31096960 + MIR3 SINE MIR 36 204 -4 826 168 0 0 chrX 131503100 131503219 -31096711 + FLAM_C SINE Alu 1 119 -24 473 0 18 0 chrX 131503222 131503279 -31096651 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 369 0 0 0 chrX 131503278 131503319 -31096611 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 792 210 96 53 chrX 131503322 131503384 -31096546 - L1ME4a LINE L1 -25 6096 6038 1732 127 35 50 chrX 131503384 131503516 -31096414 + AluSx SINE Alu 1 133 -179 2487 97 0 0 chrX 131503516 131503827 -31096103 + AluSx SINE Alu 1 311 -1 2257 117 10 0 chrX 131503830 131504129 -31095801 + AluSx SINE Alu 1 302 -10 1732 127 35 50 chrX 131504129 131504275 -31095655 + AluSx SINE Alu 135 279 -33 792 210 96 53 chrX 131504275 131504608 -31095322 - L1ME4a LINE L1 -83 6038 5684 231 216 0 114 chrX 131504711 131504799 -31095131 - L1MC5 LINE L1 -140 7821 7744 918 219 23 46 chrX 131504820 131505080 -31094850 + L1ME1 LINE L1 5906 6159 -7 34 0 0 0 chrX 131505086 131505120 -31094810 + AT_rich Low_complexity Low_complexity 1 34 0 1247 132 0 0 chrX 131505128 131505302 -31094628 - AluSg/x SINE Alu -2 310 137 23 0 0 0 chrX 131505303 131505326 -31094604 + AT_rich Low_complexity Low_complexity 1 23 0 2310 119 0 3 chrX 131505329 131505641 -31094289 + AluSx SINE Alu 1 311 -1 398 197 42 153 chrX 131505655 131505869 -31094061 - L1ME4a LINE L1 -705 5446 5290 2606 50 7 0 chrX 131505869 131506171 -31093759 - AluY SINE Alu -7 304 1 398 197 42 153 chrX 131506171 131506414 -31093516 - L1ME4a LINE L1 -861 5290 5022 1640 165 0 93 chrX 131506424 131506746 -31093184 - AluJo SINE Alu -20 292 1 653 256 106 31 chrX 131506774 131507001 -31092929 + MIR SINE MIR 8 251 -11 2190 109 7 0 chrX 131507529 131507823 -31092107 - AluSx SINE Alu -15 297 2 2438 68 3 0 chrX 131508085 131508377 -31091553 + AluY SINE Alu 1 293 -18 2694 42 3 0 chrX 131508388 131508694 -31091236 + AluSc SINE Alu 1 307 -2 1812 138 9 41 chrX 131508830 131509149 -31090781 + AluJo SINE Alu 1 309 -3 2366 91 19 0 chrX 131509151 131509458 -31090472 + AluSq SINE Alu 1 313 0 612 208 115 26 chrX 131510091 131510317 -31089613 + L1ME4a LINE L1 5785 6030 -91 2261 90 28 0 chrX 131510399 131510688 -31089242 + AluSq SINE Alu 1 297 -16 26 30 0 0 chrX 131510798 131510831 -31089099 + AT_rich Low_complexity Low_complexity 1 33 0 2435 82 0 0 chrX 131510832 131511123 -31088807 + AluSx SINE Alu 1 291 -21 1895 136 0 18 chrX 131511131 131511404 -31088526 + AluJb SINE Alu 24 291 -21 1935 154 0 0 chrX 131511409 131511701 -31088229 + AluSx SINE Alu 2 293 -19 246 286 43 0 chrX 131511885 131511955 -31087975 + L2 LINE L2 3198 3270 -2 2038 131 10 16 chrX 131512392 131512704 -31087226 + AluJb SINE Alu 1 310 -2 1687 117 0 0 chrX 131513172 131513394 -31086536 - AluSg/x SINE Alu -21 291 70 1984 134 38 0 chrX 131513437 131513729 -31086201 - AluSx SINE Alu -9 303 1 516 56 0 0 chrX 131514627 131514699 -31085231 + (TC)n Simple_repeat Simple_repeat 2 73 0 813 209 142 22 chrX 131516116 131516341 -31083589 - MIR SINE MIR -4 258 7 1791 168 6 29 chrX 131517369 131517685 -31082245 + AluJb SINE Alu 4 312 0 352 133 13 27 chrX 131517688 131517763 -31082167 + GA-rich Low_complexity Low_complexity 3 76 0 275 410 35 27 chrX 131517793 131518054 -31081876 - L2 LINE L2 -2 3270 3008 680 133 33 0 chrX 131518096 131518216 -31081714 - FLAM_C SINE Alu -18 125 2 239 264 22 44 chrX 131518233 131518324 -31081606 + MIR SINE MIR 65 153 -109 305 221 0 35 chrX 131519072 131519158 -31080772 + C-rich Low_complexity Low_complexity 1 83 0 398 292 50 78 chrX 131520458 131520677 -31079253 + L2 LINE L2 3043 3255 -17 202 323 0 32 chrX 131520682 131520744 -31079186 + MIR3 SINE MIR 139 198 -10 240 288 12 12 chrX 131520991 131521071 -31078859 - MIR3 SINE MIR -2 206 127 477 311 44 24 chrX 131521987 131522193 -31077737 - MIR SINE MIR -46 216 7 2368 84 20 0 chrX 131522278 131522576 -31077354 + AluSx SINE Alu 1 304 -8 579 173 0 9 chrX 131522576 131522676 -31077254 - FAM SINE Alu -146 175 75 2422 94 3 0 chrX 131524015 131524324 -31075606 + AluSq SINE Alu 1 310 -3 583 93 0 0 chrX 131524408 131524494 -31075436 - Alu SINE Alu -7 305 220 2330 96 13 10 chrX 131524495 131524798 -31075132 - AluSq SINE Alu -9 304 1 981 112 0 0 chrX 131524800 131524925 -31075005 - AluSq/x SINE Alu -178 135 11 2006 136 13 23 chrX 131525374 131525683 -31074247 + AluSx SINE Alu 1 306 -6 482 104 42 0 chrX 131525708 131525804 -31074126 + GA-rich Low_complexity Low_complexity 1 100 0 2624 47 3 0 chrX 131526082 131526382 -31073548 - AluY SINE Alu -10 301 1 1058 84 0 2 chrX 131526389 131526639 -31073291 - AluY SINE Alu 0 311 2 2413 79 3 7 chrX 131527495 131527799 -31072131 - AluSg SINE Alu -7 303 1 339 202 0 36 chrX 131528111 131528195 -31071735 - L2 LINE L2 -3 3269 3189 2221 104 3 3 chrX 131528661 131528959 -31070971 - AluSq SINE Alu -15 298 1 2083 150 0 13 chrX 131529020 131529333 -31070597 - AluJb SINE Alu -1 311 3 2253 85 3 7 chrX 131529341 131529647 -31070283 - AluSx SINE Alu 0 305 1 1433 145 79 59 chrX 131529676 131529966 -31069964 - AluJo SINE Alu -16 296 1 243 205 12 145 chrX 131530435 131530475 -31069455 + MIR SINE MIR 13 38 -224 1934 164 3 10 chrX 131530475 131530773 -31069157 - AluJb SINE Alu -16 296 1 243 205 12 145 chrX 131530773 131530815 -31069115 + MIR SINE MIR 38 84 -178 791 174 8 0 chrX 131530816 131530948 -31068982 + FLAM_C SINE Alu 1 133 0 894 144 49 14 chrX 131530951 131531119 -31068811 + L1MB5 LINE L1 5752 5884 -300 2381 113 3 0 chrX 131531119 131531428 -31068502 - AluSq SINE Alu -3 310 1 894 144 49 14 chrX 131531428 131531470 -31068460 + L1MB5 LINE L1 5884 5923 -261 22 35 0 0 chrX 131531474 131531503 -31068427 + AT_rich Low_complexity Low_complexity 1 29 0 1327 48 0 0 chrX 131531504 131531669 -31068261 - L1PB1 LINE L1 -2 6149 5985 2187 118 23 0 chrX 131531691 131531996 -31067934 - AluSx SINE Alu 0 312 1 2910 49 10 106 chrX 131531996 131532270 -31067660 - L1PB1 LINE L1 -119 6032 5733 2017 138 7 3 chrX 131532270 131532561 -31067369 - AluSx SINE Alu -18 294 3 2910 49 10 106 chrX 131532561 131532692 -31067238 - L1PB1 LINE L1 -418 5733 5591 2625 44 0 0 chrX 131532692 131532989 -31066941 - AluY SINE Alu -14 297 1 2264 98 24 3 chrX 131532989 131533285 -31066645 - AluSg SINE Alu -7 303 1 2910 49 10 106 chrX 131533285 131533370 -31066560 - L1PB1 LINE L1 -558 5593 5587 693 179 0 0 chrX 131533370 131533487 -31066443 - FLAM_C SINE Alu -16 117 1 1223 186 28 8 chrX 131533487 131533709 -31066221 + L1MB5 LINE L1 5910 6139 -35 2422 91 0 10 chrX 131533709 131534018 -31065912 - AluSg SINE Alu -3 307 2 1223 186 28 8 chrX 131534018 131534048 -31065882 + L1MB5 LINE L1 6139 6167 -7 768 244 6 0 chrX 131534059 131534235 -31065695 + MIR SINE MIR 75 251 -11 435 299 17 34 chrX 131534339 131534516 -31065414 + MER5A DNA MER1_type 10 183 -6 238 49 24 24 chrX 131534715 131534756 -31065174 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 357 24 0 0 chrX 131534755 131534797 -31065133 + (GA)n Simple_repeat Simple_repeat 2 43 0 367 233 0 0 chrX 131535731 131535804 -31064126 - MIR SINE MIR -16 246 174 634 173 8 31 chrX 131535822 131535949 -31063981 - AluJb SINE Alu -187 125 2 537 235 72 7 chrX 131535953 131536106 -31063824 - MIR SINE MIR -87 175 13 180 156 31 0 chrX 131536175 131536207 -31063723 + MIR SINE MIR 113 145 -63 217 279 42 116 chrX 131536208 131536398 -31063532 - L2 LINE L2 -31 3241 3066 2173 115 0 0 chrX 131536448 131536757 -31063173 - AluSx SINE Alu 0 311 3 2318 118 0 6 chrX 131536847 131537162 -31062768 + AluSq SINE Alu 1 313 0 629 144 0 0 chrX 131537181 131537278 -31062652 + FLAM_C SINE Alu 11 107 -36 2321 102 3 0 chrX 131537300 131537593 -31062337 - AluSq SINE Alu -19 294 1 197 346 110 7 chrX 131537662 131537798 -31062132 - L2 LINE L2 -400 2914 2765 735 121 0 17 chrX 131537893 131538009 -31061921 + FLAM_C SINE Alu 1 114 -19 23 0 0 0 chrX 131538028 131538051 -31061879 + AT_rich Low_complexity Low_complexity 1 23 0 2173 119 6 16 chrX 131538994 131539306 -31060624 + AluJo SINE Alu 1 309 -3 351 306 128 25 chrX 131539693 131539889 -31060041 + MIR SINE MIR 5 220 -42 245 75 25 0 chrX 131540459 131540499 -31059431 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 57 0 0 chrX 131541678 131541713 -31058217 + GC_rich Low_complexity Low_complexity 1 35 0 189 171 0 0 chrX 131542070 131542105 -31057825 + CT-rich Low_complexity Low_complexity 1 35 0 224 273 11 60 chrX 131542595 131542778 -31057152 + (CGGGG)n Simple_repeat Simple_repeat 1 174 0 * 233 315 22 22 chrX 131542705 131542883 -31057047 + G-rich Low_complexity Low_complexity 3 180 0 205 319 0 0 chrX 131543725 131543797 -31056133 + G-rich Low_complexity Low_complexity 1 72 0 278 250 14 0 chrX 131544249 131544321 -31055609 + CT-rich Low_complexity Low_complexity 1 73 0 33 0 0 0 chrX 131545543 131545576 -31054354 + GC_rich Low_complexity Low_complexity 1 33 0 213 169 26 39 chrX 131545927 131546004 -31053926 + (CGGGG)n Simple_repeat Simple_repeat 3 78 0 414 167 0 0 chrX 131546004 131546088 -31053842 + (CCG)n Simple_repeat Simple_repeat 3 86 0 206 289 0 33 chrX 131546092 131546213 -31053717 + G-rich Low_complexity Low_complexity 4 120 0 1791 115 16 4 chrX 131547691 131547943 -31051987 - AluSx SINE Alu -5 307 53 2351 115 0 0 chrX 131548381 131548693 -31051237 + AluSx SINE Alu 1 312 0 231 143 48 0 chrX 131550858 131550900 -31049030 - MER5A DNA MER1_type 0 189 146 * 272 298 0 12 chrX 131550898 131550982 -31048948 + MIR SINE MIR 28 110 -152 2239 82 7 36 chrX 131550984 131551287 -31048643 - AluY SINE Alu -14 297 4 2273 111 6 16 chrX 131551296 131551611 -31048319 - AluSx SINE Alu 0 312 1 2366 105 0 0 chrX 131551625 131551930 -31048000 - AluSx SINE Alu -7 305 1 434 235 220 0 chrX 131551931 131552063 -31047867 + MIR SINE MIR 102 262 0 2533 70 0 0 chrX 131552074 131552375 -31047555 - AluY SINE Alu -10 301 1 1197 155 18 27 chrX 131552767 131552948 -31046982 - AluSg/x SINE Alu -1 311 131 2189 130 0 9 chrX 131552948 131553264 -31046666 - AluSq SINE Alu 0 313 1 1197 155 18 27 chrX 131553264 131553301 -31046629 - AluSg/x SINE Alu -181 131 95 259 100 180 0 chrX 131553301 131553351 -31046579 - AluSp SINE Alu -116 187 129 757 164 0 15 chrX 131553351 131553485 -31046445 - AluJo/FLAM SINE Alu -169 133 2 2525 70 0 25 chrX 131553493 131553807 -31046123 - AluSg SINE Alu -3 307 2 985 211 0 16 chrX 131553809 131553999 -31045931 - AluJb SINE Alu -7 305 119 1723 157 10 54 chrX 131553999 131554312 -31045618 + AluJo SINE Alu 1 299 -13 1033 101 14 0 chrX 131554561 131554700 -31045230 - AluJb SINE Alu -171 141 1 1870 161 7 10 chrX 131555248 131555547 -31044383 + AluJo SINE Alu 1 298 -14 2005 123 37 7 chrX 131555630 131555930 -31044000 - AluSq SINE Alu -4 309 1 192 200 220 50 chrX 131555937 131556037 -31043893 - MIR SINE MIR -39 223 107 605 311 35 12 chrX 131556184 131556441 -31043489 + MARNA DNA Mariner 301 563 -23 2259 127 0 0 chrX 131556851 131557150 -31042780 - AluSx SINE Alu -13 299 1 2220 119 3 0 chrX 131557281 131557584 -31042346 - AluSx SINE Alu -8 304 1 1912 164 10 3 chrX 131558457 131558761 -31041169 - AluJo SINE Alu -6 306 1 2442 88 0 0 chrX 131559356 131559662 -31040268 + AluSg SINE Alu 1 306 -4 201 74 0 0 chrX 131559828 131559855 -31040075 + (TA)n Simple_repeat Simple_repeat 1 27 0 399 192 13 13 chrX 131560386 131560464 -31039466 + MER5A DNA MER1_type 85 162 -27 2009 136 3 0 chrX 131561142 131561436 -31038494 - AluJb SINE Alu -1 311 17 2251 86 7 0 chrX 131561539 131561818 -31038112 - AluSx SINE Alu -31 281 1 2018 137 34 0 chrX 131561890 131562182 -31037748 - AluJb SINE Alu -10 302 1 1545 155 97 28 chrX 131562321 131562714 -31037216 - LTR37A LTR ERV1 0 426 7 297 0 0 0 chrX 131562741 131562774 -31037156 + (TG)n Simple_repeat Simple_repeat 2 34 0 725 294 117 71 chrX 131562840 131562922 -31037008 - L2 LINE L2 0 3272 3195 2312 116 6 0 chrX 131562922 131563233 -31036697 - AluSp SINE Alu 0 313 1 725 294 117 71 chrX 131563233 131564372 -31035558 - L2 LINE L2 -77 3195 2014 235 130 37 0 chrX 131564377 131564431 -31035499 + GA-rich Low_complexity Low_complexity 4 59 0 292 280 22 50 chrX 131564550 131564741 -31035189 + GA-rich Low_complexity Low_complexity 1 185 0 1025 248 20 108 chrX 131564910 131565204 -31034726 + L2 LINE L2 2846 3081 -232 2294 119 6 0 chrX 131565204 131565515 -31034415 - AluSp SINE Alu 0 313 1 1025 248 20 108 chrX 131565515 131565712 -31034218 + L2 LINE L2 3081 3294 -19 2436 89 0 0 chrX 131566086 131566389 -31033541 - AluSx SINE Alu -9 303 1 1820 144 0 45 chrX 131567461 131567774 -31032156 - AluSx SINE Alu -13 299 1 2656 40 3 0 chrX 131568203 131568503 -31031427 - AluY SINE Alu -10 301 1 197 33 33 0 chrX 131568506 131568536 -31031394 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1340 114 0 0 chrX 131568547 131568714 -31031216 - AluSg SINE Alu -143 167 1 2310 108 0 13 chrX 131569358 131569674 -31030256 + AluSx SINE Alu 1 312 0 2167 126 14 0 chrX 131569771 131570064 -31029866 - AluSx SINE Alu -15 297 1 2494 70 3 0 chrX 131570109 131570407 -31029523 - AluSp SINE Alu -14 299 1 315 214 0 14 chrX 131570912 131570982 -31028948 - L2 LINE L2 -212 3060 2992 2309 80 37 10 chrX 131571027 131571327 -31028603 + AluSp SINE Alu 1 308 -5 1283 115 0 31 chrX 131572687 131572878 -31027052 + AluSg/x SINE Alu 128 312 0 2175 121 3 16 chrX 131573071 131573386 -31026544 - AluSx SINE Alu -1 311 1 444 394 0 0 chrX 131575511 131575859 -31024071 + C-rich Low_complexity Low_complexity 1 348 0 257 270 27 14 chrX 131578929 131579003 -31020927 - Charlie4 DNA MER1_type -5 1956 1882 574 239 96 51 chrX 131579277 131579474 -31020456 - MIR SINE MIR -56 206 1 2053 136 20 0 chrX 131579485 131579780 -31020150 - AluJo SINE Alu -11 301 1 183 273 36 0 chrX 131579824 131579879 -31020051 - L2 LINE L2 -14 3299 3243 832 225 22 89 chrX 131579895 131580087 -31019843 + MIR SINE MIR 7 177 -85 1276 142 19 38 chrX 131580087 131580354 -31019576 + L1MB7 LINE L1 5923 6184 0 832 225 22 89 chrX 131580354 131580432 -31019498 + MIR SINE MIR 177 259 -3 502 115 0 0 chrX 131581032 131581110 -31018820 - AluS SINE Alu -235 78 1 461 236 14 50 chrX 131582060 131582200 -31017730 + MIR SINE MIR 82 216 -46 2012 141 3 13 chrX 131583631 131583930 -31016000 - AluJb SINE Alu -16 296 1 2473 90 0 0 chrX 131584080 131584390 -31015540 - AluSx SINE Alu -1 311 2 518 246 77 38 chrX 131586601 131586784 -31013146 - MIR SINE MIR -70 192 3 210 71 0 0 chrX 131587090 131587118 -31012812 + (GGA)n Simple_repeat Simple_repeat 2 29 0 619 303 5 27 chrX 131588457 131588645 -31011285 - L3 LINE CR1 -16 1561 1378 499 234 83 42 chrX 131589483 131589675 -31010255 - MIR SINE MIR -3 259 60 2066 138 13 13 chrX 131591486 131591797 -31008133 - AluSx SINE Alu 0 312 2 486 332 15 20 chrX 131592193 131592389 -31007541 - MIR SINE MIR -43 219 25 183 129 0 0 chrX 131592528 131592559 -31007371 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 241 242 45 129 chrX 131593319 131593345 -31006585 - L2 LINE L2 -10 3303 3276 2317 115 0 0 chrX 131593345 131593649 -31006281 + AluSx SINE Alu 1 304 -8 241 242 45 129 chrX 131593649 131593754 -31006176 - L2 LINE L2 -37 3276 3183 2517 190 46 11 chrX 131593933 131594455 -31005475 - MLT1F LTR MaLR -2 540 1 334 271 33 16 chrX 131594455 131594577 -31005353 - MLT1F-int LTR MaLR 0 1371 1248 405 0 0 0 chrX 131594577 131594622 -31005308 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2127 114 0 4 chrX 131594625 131594905 -31005025 - AluSq SINE Alu -33 280 2 2099 135 0 19 chrX 131594908 131595226 -31004704 - AluSx SINE Alu 0 312 1 267 270 56 0 chrX 131595305 131595394 -31004536 - MIR SINE MIR -132 130 37 2319 104 3 0 chrX 131595544 131595843 -31004087 + AluSx SINE Alu 1 300 -12 498 307 78 0 chrX 131596992 131597197 -31002733 - MIR SINE MIR -12 250 30 285 240 0 62 chrX 131597285 131597381 -31002549 - L1ME LINE L1 -439 5682 5593 2344 107 0 0 chrX 131598106 131598404 -31001526 - AluSx SINE Alu -14 298 1 2261 110 7 0 chrX 131598707 131598997 -31000933 + AluSx SINE Alu 1 292 -20 2358 100 13 0 chrX 131599457 131599758 -31000172 + AluSg SINE Alu 4 308 -2 2320 105 0 0 chrX 131600329 131600625 -30999305 - AluSx SINE Alu -16 296 1 383 138 0 9 chrX 131602932 131603142 -30996788 + AluJo SINE Alu 1 302 0 1411 87 0 0 chrX 131603234 131603406 -30996524 - AluSq SINE Alu -70 243 72 2431 68 0 3 chrX 131603476 131603770 -30996160 - AluY SINE Alu -18 293 1 252 135 0 0 chrX 131603850 131603887 -30996043 - Alu SINE Alu -17 285 249 1916 125 7 28 chrX 131603950 131604238 -30995692 - AluJo SINE Alu -30 282 1 364 83 66 207 chrX 131604477 131604533 -30995397 - L1MB5 LINE L1 0 6174 6112 2378 103 0 3 chrX 131604533 131604844 -30995086 + AluSx SINE Alu 1 310 -2 364 83 66 207 chrX 131604844 131604871 -30995059 - L1MB5 LINE L1 -62 6112 6110 2040 142 17 0 chrX 131604871 131605173 -30994757 - AluSx SINE Alu -5 307 1 364 83 66 207 chrX 131605173 131605209 -30994721 - L1MB5 LINE L1 -64 6110 6071 2291 75 3 39 chrX 131605420 131605590 -30994340 - AluSc SINE Alu -13 296 121 351 0 0 0 chrX 131605590 131605629 -30994301 + (TA)n Simple_repeat Simple_repeat 1 39 0 2322 46 64 7 chrX 131605629 131605912 -30994018 - AluY SINE Alu -10 301 3 2291 75 3 39 chrX 131605912 131606047 -30993883 - AluSc SINE Alu -186 123 1 2401 96 3 6 chrX 131606338 131606651 -30993279 - AluSq SINE Alu 0 313 2 241 293 12 24 chrX 131606833 131606915 -30993015 - L2 LINE L2 0 3313 3233 1909 169 0 0 chrX 131607443 131607755 -30992175 - AluJb SINE Alu 0 312 7 577 143 25 34 chrX 131607790 131607843 -30992087 - L1MB5 LINE L1 -8 6166 6114 1841 173 3 19 chrX 131607843 131608155 -30991775 + AluJb SINE Alu 1 307 -5 577 143 25 34 chrX 131608155 131608220 -30991710 - L1MB5 LINE L1 -60 6114 6049 1116 126 0 51 chrX 131608220 131608395 -30991535 - AluSg/x SINE Alu -13 297 132 2546 61 0 0 chrX 131608395 131608689 -30991241 - AluY SINE Alu -17 294 1 2218 171 55 5 chrX 131608689 131609123 -30990807 - L1MB5 LINE L1 -112 6062 5607 743 291 68 4 chrX 131609328 131609579 -30990351 + MARNA DNA Mariner 309 575 -11 459 278 0 9 chrX 131609604 131609712 -30990218 - L2 LINE L2 -14 3299 3193 2857 157 59 34 chrX 131610492 131611105 -30988825 - L1MB5 LINE L1 -8 6166 5539 776 110 0 82 chrX 131611110 131611189 -30988741 - L1M4 LINE L1 -411 5763 5699 2127 120 0 3 chrX 131611189 131611501 -30988429 - AluSx SINE Alu 0 311 1 776 110 0 82 chrX 131611501 131611566 -30988364 - L1M4 LINE L1 -475 5699 5630 599 202 165 50 chrX 131611769 131611987 -30987943 - MER102b DNA MER1_type -2 339 97 1887 139 20 27 chrX 131611993 131612294 -30987636 + AluJo SINE Alu 1 299 -13 1967 125 11 0 chrX 131614726 131615007 -30984923 + AluSx SINE Alu 24 307 -5 180 77 0 0 chrX 131616392 131616418 -30983512 + (GA)n Simple_repeat Simple_repeat 1 26 0 2138 95 44 0 chrX 131616473 131616769 -30983161 + AluSq SINE Alu 1 309 -4 234 176 0 0 chrX 131619456 131619507 -30980423 + A-rich Low_complexity Low_complexity 1 51 0 219 69 0 0 chrX 131619707 131619736 -30980194 + (TA)n Simple_repeat Simple_repeat 1 29 0 218 218 0 36 chrX 131619929 131619984 -30979946 + CT-rich Low_complexity Low_complexity 2 54 0 207 336 59 17 chrX 131621053 131621172 -30978758 - L2 LINE L2 -222 3050 2927 247 307 40 10 chrX 131621407 131621508 -30978422 + MIR SINE MIR 61 164 -98 21 0 0 0 chrX 131622205 131622226 -30977704 + GC_rich Low_complexity Low_complexity 1 21 0 496 274 91 23 chrX 131623060 131623235 -30976695 - L2 LINE L2 -1 3312 3126 2086 110 0 0 chrX 131623251 131623543 -30976387 + AluSx SINE Alu 11 302 -10 1879 105 61 3 chrX 131624339 131624634 -30975296 - AluSx SINE Alu 0 312 1 2400 78 0 0 chrX 131624663 131624969 -30974961 - AluSc SINE Alu -3 306 1 299 377 40 61 chrX 131625590 131625798 -30974132 - L2 LINE L2 -720 2594 2383 899 41 0 49 chrX 131625798 131625964 -30973966 - L1PA8 LINE L1 0 6172 6052 299 377 40 61 chrX 131625964 131625999 -30973931 - L2 LINE L2 -931 2383 2349 2073 117 17 0 chrX 131625999 131626299 -30973631 + AluSx SINE Alu 1 305 -7 299 377 40 61 chrX 131626299 131626431 -30973499 - L2 LINE L2 -965 2349 2226 228 230 54 14 chrX 131626567 131626641 -30973289 - L2 LINE L2 -1371 1943 1867 319 276 19 38 chrX 131626679 131626784 -30973146 - MER91B DNA MER1_type 0 190 88 1129 145 0 0 chrX 131629480 131629652 -30970278 - AluJo/FRAM SINE Alu -7 305 134 2221 109 3 0 chrX 131629652 131629955 -30969975 - AluSx SINE Alu -8 304 1 470 222 36 108 chrX 131629956 131630150 -30969780 - MIR SINE MIR -5 257 78 192 322 0 123 chrX 131630150 131630321 -30969609 - MIR SINE MIR -111 151 2 215 158 0 0 chrX 131630654 131630692 -30969238 + MIR SINE MIR 83 120 -88 2292 100 0 0 chrX 131630786 131631087 -30968843 + AluSx SINE Alu 2 302 -10 195 196 0 0 chrX 131631984 131631997 -30967933 + GA-rich Low_complexity Low_complexity 2 14 -33 2302 98 0 16 chrX 131631997 131632134 -30967796 + AluSx SINE Alu 1 139 -173 2303 77 0 10 chrX 131632134 131632466 -30967464 + AluY SINE Alu 1 311 0 2302 98 0 16 chrX 131632466 131632645 -30967285 + AluSx SINE Alu 139 312 0 195 196 0 0 chrX 131632645 131632677 -30967253 + GA-rich Low_complexity Low_complexity 13 47 0 566 211 0 32 chrX 131634561 131634684 -30965246 - MIR3 SINE MIR -18 190 72 206 31 0 31 chrX 131634921 131634953 -30964977 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2073 95 0 4 chrX 131634956 131635230 -30964700 - AluSg SINE Alu -37 273 1 531 130 0 123 chrX 131635327 131635356 -30964574 + L1MB3 LINE L1 5798 5829 -364 2224 100 0 0 chrX 131635356 131635655 -30964275 - AluSq SINE Alu -14 299 1 531 130 0 123 chrX 131635655 131635766 -30964164 + L1MB3 LINE L1 5829 5914 -279 2282 95 0 0 chrX 131636817 131637112 -30962818 - AluSx SINE Alu -17 295 1 2482 54 0 0 chrX 131637122 131637419 -30962511 - AluY SINE Alu -14 297 1 316 314 22 22 chrX 131637806 131637943 -30961987 - L2 LINE L2 -925 2389 2253 376 297 119 50 chrX 131638018 131638086 -30961844 + L1ME4a LINE L1 5874 5936 -185 825 130 0 43 chrX 131638086 131638224 -30961706 + FLAM_C SINE Alu 1 132 -1 376 297 119 50 chrX 131638224 131638271 -30961659 + L1ME4a LINE L1 5936 5978 -143 2189 112 3 0 chrX 131638271 131638574 -30961356 - AluSx SINE Alu -8 304 1 376 297 119 50 chrX 131638574 131638676 -30961254 + L1ME4a LINE L1 5978 6107 -14 426 327 40 20 chrX 131638734 131638914 -30961016 - L2 LINE L2 -1316 1998 1815 990 249 32 32 chrX 131638914 131638950 -30960980 + MIR SINE MIR 2 37 -225 968 181 9 81 chrX 131638950 131639139 -30960791 - MER3 DNA MER1_type -4 205 33 2145 111 7 0 chrX 131639139 131639437 -30960493 - AluSq SINE Alu -13 300 1 968 181 9 81 chrX 131639437 131639468 -30960462 - MER3 DNA MER1_type -176 33 1 990 249 32 32 chrX 131639468 131639684 -30960246 + MIR SINE MIR 36 254 -8 324 229 93 36 chrX 131639686 131639826 -30960104 + L1ME3A LINE L1 6017 6164 -6 2160 100 10 3 chrX 131639877 131640188 -30959742 - AluSp SINE Alu 0 313 1 1679 130 6 63 chrX 131640188 131640319 -30959611 + AluJb SINE Alu 14 151 -161 2109 106 3 0 chrX 131640319 131640601 -30959329 + AluSq SINE Alu 1 283 -30 405 0 0 0 chrX 131640606 131640651 -30959279 + (CA)n Simple_repeat Simple_repeat 2 46 0 1679 130 6 63 chrX 131640651 131640828 -30959102 + AluJb SINE Alu 155 310 -2 2059 136 0 0 chrX 131641018 131641327 -30958603 + AluSq SINE Alu 1 309 -4 370 255 50 115 chrX 131641879 131641984 -30957946 - MIR3 SINE MIR -6 202 115 2115 106 0 7 chrX 131641984 131642285 -30957645 + AluSx SINE Alu 3 301 -11 370 255 50 115 chrX 131642285 131642379 -30957551 - MIR3 SINE MIR -93 115 16 204 244 0 0 chrX 131642951 131642996 -30956934 + L2 LINE L2 3262 3306 -7 228 67 0 0 chrX 131644928 131644958 -30954972 + (CCCCCA)n Simple_repeat Simple_repeat 6 35 0 319 364 25 0 chrX 131645497 131645618 -30954312 + L2 LINE L2 3139 3262 -10 651 108 0 0 chrX 131645618 131645720 -30954210 + (TGGA)n Simple_repeat Simple_repeat 4 105 0 188 326 21 32 chrX 131648403 131648498 -30951432 + MIR SINE MIR 59 152 -56 268 313 48 0 chrX 131649215 131649298 -30950632 + MIR SINE MIR 120 206 -56 2137 83 45 0 chrX 131649322 131649611 -30950319 - AluSx SINE Alu -10 302 1 895 98 0 8 chrX 131649970 131650102 -30949828 + AluSp/q SINE Alu 182 312 -1 2172 99 0 3 chrX 131650274 131650567 -30949363 + AluSx SINE Alu 2 293 -19 2102 114 0 22 chrX 131651064 131651381 -30948549 + AluJb SINE Alu 1 310 -2 423 272 130 18 chrX 131651397 131651566 -30948364 - MIR3 SINE MIR -7 201 14 1251 167 0 14 chrX 131651660 131651875 -30948055 + AluSx SINE Alu 1 212 -100 508 33 0 0 chrX 131651875 131651935 -30947995 + AluSq/x SINE Alu 78 137 -175 2236 109 0 3 chrX 131651935 131652246 -30947684 + AluSg SINE Alu 1 310 0 331 313 30 8 chrX 131652315 131652449 -30947481 + L2 LINE L2 2922 3058 -214 649 207 37 7 chrX 131652512 131652647 -30947283 + MER58 DNA MER1_type 1 139 -202 1352 156 0 5 chrX 131652668 131652880 -30947050 - AluJb SINE Alu -24 288 78 21 0 0 31 chrX 131652969 131652988 -30946942 + AT_rich Low_complexity Low_complexity 1 20 -11 2216 83 3 3 chrX 131652988 131653278 -30946652 + AluSq SINE Alu 1 290 -23 21 0 0 31 chrX 131653278 131653290 -30946640 + AT_rich Low_complexity Low_complexity 20 31 0 875 126 0 0 chrX 131653300 131653427 -30946503 - FLAM_C SINE Alu -2 131 5 527 205 149 19 chrX 131653518 131653679 -30946251 + MIR3 SINE MIR 4 185 -23 1044 186 68 55 chrX 131654695 131654874 -30945056 + MER8 DNA MER2_type 1 185 -54 1648 130 68 41 chrX 131654874 131655166 -30944764 + AluSx SINE Alu 1 300 -12 1044 186 68 55 chrX 131655166 131655222 -30944708 + MER8 DNA MER2_type 185 239 0 2154 102 3 16 chrX 131655793 131655928 -30944002 + AluSx SINE Alu 1 136 -176 2000 83 7 63 chrX 131655928 131656260 -30943670 + AluSx SINE Alu 1 315 0 2154 102 3 16 chrX 131656260 131656436 -30943494 + AluSx SINE Alu 136 309 -3 236 126 0 0 chrX 131657060 131657099 -30942831 - MIR SINE MIR -125 83 45 225 318 35 59 chrX 131657145 131657302 -30942628 - MIR SINE MIR -37 171 20 753 124 43 124 chrX 131657942 131658018 -30941912 + L1MB8 LINE L1 5979 6060 -118 1901 141 0 3 chrX 131658018 131658327 -30941603 - AluSx SINE Alu 0 308 1 753 124 43 124 chrX 131658327 131658459 -30941471 + L1MB8 LINE L1 6060 6171 -7 397 301 91 28 chrX 131658696 131658839 -30941091 + MIR3 SINE MIR 51 202 -6 823 157 8 15 chrX 131658858 131658992 -30940938 + FLAM_C SINE Alu 1 133 0 2238 100 10 0 chrX 131658999 131659308 -30940622 + AluSx SINE Alu 1 312 0 198 288 0 61 chrX 131660962 131661028 -30938902 + MIR SINE MIR 63 124 -84 2323 99 0 0 chrX 131661135 131661448 -30938482 + AluSq SINE Alu 1 313 0 1907 122 14 0 chrX 131661486 131661772 -30938158 - AluSx SINE Alu -14 298 9 206 333 0 14 chrX 131662041 131662110 -30937820 + MIR SINE MIR 16 83 -125 2126 62 7 28 chrX 131663354 131663689 -30936241 + AluSp SINE Alu 1 329 0 1967 124 0 33 chrX 131663698 131664004 -30935926 + AluSx SINE Alu 1 296 -16 716 250 56 23 chrX 131664073 131664363 -30935567 + L1ME LINE L1 4627 4948 -1198 1669 182 23 10 chrX 131664375 131664683 -30935247 + AluJo SINE Alu 1 312 0 557 203 0 8 chrX 131664697 131664825 -30935105 + GA-rich Low_complexity Low_complexity 1 127 0 1700 189 19 31 chrX 131664827 131665372 -30934558 + L1ME LINE L1 4942 5476 -690 378 0 0 0 chrX 131666121 131666163 -30933767 + (CA)n Simple_repeat Simple_repeat 2 43 0 518 184 179 89 chrX 131666370 131666549 -30933381 - MIR SINE MIR 0 262 68 2278 102 0 35 chrX 131666720 131667033 -30932897 + AluSx SINE Alu 1 302 -10 423 0 0 0 chrX 131667698 131667745 -30932185 + (TG)n Simple_repeat Simple_repeat 2 48 0 245 203 34 34 chrX 131668210 131668269 -30931661 + L2 LINE L2 3206 3264 -8 2025 123 0 7 chrX 131668837 131669151 -30930779 + AluSx SINE Alu 1 312 0 612 242 132 37 chrX 131669569 131669759 -30930171 - MIR SINE MIR -21 241 34 2443 74 7 0 chrX 131669771 131670068 -30929862 + AluSp SINE Alu 1 299 -14 560 176 0 0 chrX 131670077 131670179 -30929751 + FRAM SINE Alu 72 173 -3 248 191 11 56 chrX 131672366 131672455 -30927475 + C-rich Low_complexity Low_complexity 1 85 0 231 232 32 32 chrX 131672588 131672683 -30927247 + (CGGGG)n Simple_repeat Simple_repeat 1 95 0 206 158 21 32 chrX 131672780 131672875 -30927055 + GA-rich Low_complexity Low_complexity 3 96 0 24 32 0 0 chrX 131672896 131672927 -30927003 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 131673041 131673063 -30926867 + GC_rich Low_complexity Low_complexity 1 22 0 569 206 35 184 chrX 131674283 131674428 -30925502 + MIR SINE MIR 17 182 -80 2343 108 3 0 chrX 131674428 131674733 -30925197 + AluSx SINE Alu 1 306 -6 569 206 35 184 chrX 131674733 131674751 -30925179 + MIR SINE MIR 182 201 -61 1627 89 11 126 chrX 131674751 131674907 -30925023 - L1MA3 LINE L1 0 6305 6133 2557 60 0 19 chrX 131674907 131675224 -30924706 - AluY SINE Alu 0 311 1 1627 89 11 126 chrX 131675224 131675271 -30924659 - L1MA3 LINE L1 -172 6133 6082 2517 78 0 0 chrX 131675271 131675567 -30924363 - AluSp SINE Alu -17 296 1 1627 89 11 126 chrX 131675567 131675710 -30924220 - L1MA3 LINE L1 -223 6082 5998 569 206 35 184 chrX 131675710 131675827 -30924103 + MIR SINE MIR 201 256 -6 1961 175 0 7 chrX 131676638 131676947 -30922983 - AluJo SINE Alu -5 307 1 2164 130 13 0 chrX 131677174 131677482 -30922448 + AluSx SINE Alu 1 312 0 477 99 22 22 chrX 131677489 131677580 -30922350 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 1344 75 0 75 chrX 131677943 131678130 -30921800 - AluSq SINE Alu -7 306 134 2330 118 0 0 chrX 131678130 131678435 -30921495 - AluSg SINE Alu -5 305 1 2540 62 0 10 chrX 131678775 131679081 -30920849 + AluY SINE Alu 1 303 -8 287 315 12 12 chrX 131680530 131680695 -30919235 + (TG)n Simple_repeat Simple_repeat 1 165 0 234 116 0 0 chrX 131682051 131682094 -30917836 + (T)n Simple_repeat Simple_repeat 1 43 0 2093 84 18 21 chrX 131683081 131683367 -30916563 - AluSx SINE Alu 0 312 28 443 234 114 30 chrX 131685014 131685181 -30914749 - MIR3 SINE MIR -12 196 16 2222 89 16 32 chrX 131685257 131685570 -30914360 + AluSx SINE Alu 1 308 -4 782 136 0 0 chrX 131685796 131685914 -30914016 + FLAM_C SINE Alu 1 118 -15 338 338 27 34 chrX 131686031 131686179 -30913751 + L2 LINE L2 3126 3272 0 2844 180 54 30 chrX 131686476 131687070 -30912860 - MER90 LTR ERV1 0 614 7 213 271 0 0 chrX 131687460 131687508 -30912422 + G-rich Low_complexity Low_complexity 1 48 0 2473 79 3 3 chrX 131688060 131688363 -30911567 + AluSx SINE Alu 10 312 0 231 351 78 7 chrX 131688768 131688878 -30911052 - L2 LINE L2 -247 3025 2900 267 31 0 0 chrX 131688878 131688910 -30911020 + (TG)n Simple_repeat Simple_repeat 2 33 0 231 351 78 7 chrX 131688910 131688953 -30910977 - L2 LINE L2 -372 2900 2861 2318 111 0 0 chrX 131689527 131689825 -30910105 - AluSx SINE Alu -8 304 7 2295 104 3 0 chrX 131690132 131690430 -30909500 + AluSp SINE Alu 1 299 -14 382 290 21 48 chrX 131690777 131690922 -30909008 - L2 LINE L2 -1 3312 3172 993 195 19 5 chrX 131692359 131692564 -30907366 - MER3 DNA MER1_type 0 209 2 2291 95 10 3 chrX 131693719 131694013 -30905917 - AluSq SINE Alu -17 296 1 24 53 0 0 chrX 131694390 131694428 -30905502 + AT_rich Low_complexity Low_complexity 1 38 0 723 146 0 0 chrX 131694429 131694539 -30905391 - FLAM_C SINE Alu -28 115 6 2227 69 0 0 chrX 131694584 131694844 -30905086 - AluSg SINE Alu -8 302 43 1962 153 3 13 chrX 131695472 131695773 -30904157 - AluJb SINE Alu -14 298 1 2113 111 17 3 chrX 131695802 131696099 -30903831 + AluSg SINE Alu 1 301 -9 341 273 47 126 chrX 131696299 131696577 -30903353 - L2 LINE L2 0 3272 3017 358 254 189 27 chrX 131696620 131696924 -30903006 + L1ME4a LINE L1 5734 6098 -23 2184 112 0 23 chrX 131696924 131697228 -30902702 - AluSx SINE Alu -15 297 1 358 254 189 27 chrX 131697228 131697257 -30902673 + L1ME4a LINE L1 6098 6121 0 28 0 0 0 chrX 131697270 131697298 -30902632 + AT_rich Low_complexity Low_complexity 1 28 0 2432 93 3 0 chrX 131699622 131699922 -30900008 + AluSp SINE Alu 1 301 -12 2552 66 0 0 chrX 131700025 131700327 -30899603 + AluY SINE Alu 1 302 -9 945 157 60 46 chrX 131700726 131700942 -30898988 + MER20B DNA MER1_type 1 219 0 1518 97 14 42 chrX 131700970 131701187 -30898743 + AluSg/x SINE Alu 86 296 -16 360 310 0 0 chrX 131701460 131701560 -30898370 - MIR SINE MIR -76 132 33 774 102 36 22 chrX 131702510 131702647 -30897283 - L1MB7 LINE L1 -10 6174 6036 2281 118 3 0 chrX 131702676 131702980 -30896950 + AluSx SINE Alu 1 305 -7 227 29 57 0 chrX 131702990 131703025 -30896905 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 457 311 146 44 chrX 131703277 131703598 -30896332 + L2 LINE L2 289 642 -2672 201 329 0 14 chrX 131703833 131703903 -30896027 + MIR SINE MIR 15 83 -179 217 286 36 0 chrX 131704090 131704146 -30895784 - L2 LINE L2 -218 3054 2997 217 314 0 65 chrX 131704180 131704304 -30895626 + L2 LINE L2 1331 1446 -1868 2000 117 0 0 chrX 131704485 131704751 -30895179 - AluSx SINE Alu -10 302 37 1097 341 59 21 chrX 131704762 131705390 -30894540 + L2 LINE L2 1914 2565 -749 2087 107 35 21 chrX 131705410 131705699 -30894231 + AluSx SINE Alu 1 293 -19 631 259 25 66 chrX 131705765 131706008 -30893922 + MIR SINE MIR 30 262 0 515 329 104 49 chrX 131706016 131706618 -30893312 + L2 LINE L2 2553 3181 -91 245 333 25 17 chrX 131706655 131706775 -30893155 + L2 LINE L2 1457 1577 -1737 1110 175 14 18 chrX 131707584 131707801 -30892129 + MER20B DNA MER1_type 1 216 -3 28 29 0 0 chrX 131707962 131707997 -30891933 + AT_rich Low_complexity Low_complexity 1 35 0 1739 167 0 20 chrX 131707997 131708291 -30891639 + AluJo SINE Alu 1 288 -24 375 23 0 0 chrX 131708293 131708337 -30891593 + (TG)n Simple_repeat Simple_repeat 1 44 0 2237 111 0 16 chrX 131708721 131709028 -30890902 + AluSc SINE Alu 1 302 -7 2446 91 3 0 chrX 131710393 131710701 -30889229 + AluSq SINE Alu 1 309 -4 2220 120 0 0 chrX 131710764 131711063 -30888867 - AluSx SINE Alu -13 299 1 2906 13 0 0 chrX 131712168 131712476 -30887454 - AluYa5 SINE Alu -3 308 1 1244 192 59 13 chrX 131713445 131713752 -30886178 + MER20B DNA MER1_type 190 510 -273 541 261 6 6 chrX 131713748 131713905 -30886025 + MER20B DNA MER1_type 627 783 0 * 478 223 168 34 chrX 131714017 131714255 -30885675 - L1ME4a LINE L1 -29 6092 5823 1784 171 7 7 chrX 131714256 131714555 -30885375 - AluSx SINE Alu -13 299 1 2641 50 0 0 chrX 131714563 131714863 -30885067 - AluY SINE Alu -11 300 1 942 255 77 49 chrX 131714898 131715156 -30884774 - L1ME4a LINE L1 -367 5754 5478 2245 120 0 0 chrX 131715156 131715457 -30884473 - AluSx SINE Alu -11 301 1 942 255 77 49 chrX 131715457 131715625 -30884305 - L1ME4a LINE L1 -643 5478 5316 192 77 0 0 chrX 131715981 131716007 -30883923 + (TC)n Simple_repeat Simple_repeat 1 26 0 337 217 48 36 chrX 131716019 131716102 -30883828 - MIR SINE MIR -104 104 21 419 301 119 30 chrX 131717669 131717905 -30882025 - MIR SINE MIR -3 259 3 822 295 30 8 chrX 131717987 131718224 -30881706 - MIR SINE MIR -7 255 14 21 71 0 0 chrX 131719004 131719046 -30880884 + AT_rich Low_complexity Low_complexity 1 42 0 311 314 122 70 chrX 131719060 131719289 -30880641 - L1ME4a LINE L1 0 6121 5881 549 257 92 49 chrX 131719326 131719368 -30880562 - L1ME4a LINE L1 -213 5908 5869 1911 135 0 40 chrX 131719368 131719693 -30880237 + AluJo SINE Alu 1 312 0 549 257 92 49 chrX 131719693 131719934 -30879996 - L1ME4a LINE L1 -252 5869 5613 734 247 138 9 chrX 131719996 131720227 -30879703 + MIR SINE MIR 2 262 0 273 314 144 17 chrX 131721644 131721762 -30878168 - MIR3 SINE MIR -11 197 65 263 256 58 12 chrX 131722707 131722793 -30877137 + MIR SINE MIR 33 122 -140 202 216 0 0 chrX 131723532 131723569 -30876361 + GA-rich Low_complexity Low_complexity 4 40 0 409 316 10 47 chrX 131724078 131724271 -30875659 - MIR3 SINE MIR -10 198 13 477 268 85 20 chrX 131724820 131724973 -30874957 + MIR SINE MIR 81 243 -19 211 239 221 41 chrX 131725296 131725404 -30874526 + MIR SINE MIR 37 163 -61 261 277 48 0 chrX 131725606 131725689 -30874241 - MIR SINE MIR -71 191 105 816 187 183 28 chrX 131725795 131726046 -30873884 + MER63B DNA MER1_type 6 295 -141 733 181 22 22 chrX 131726059 131726197 -30873733 - FLAM_A SINE Alu -3 139 2 705 154 0 74 chrX 131726213 131726362 -30873568 + MER63B DNA MER1_type 299 436 0 2235 103 0 13 chrX 131726488 131726798 -30873132 - AluSq SINE Alu -3 310 5 1937 126 18 0 chrX 131726967 131727328 -30872602 - AluSx SINE Alu 0 366 1 1119 59 0 0 chrX 131728997 131729133 -30870797 - AluSq/x SINE Alu -177 136 1 2259 84 3 0 chrX 131729142 131729438 -30870492 - AluY SINE Alu -14 297 1 233 327 0 29 chrX 131730105 131730209 -30869721 + CT-rich Low_complexity Low_complexity 5 105 0 200 0 0 91 chrX 131731131 131731164 -30868766 + (TATTG)n Simple_repeat Simple_repeat 3 32 0 497 175 19 110 chrX 131731256 131731410 -30868520 + L1ME3A LINE L1 5891 6030 -140 194 205 0 0 chrX 131731423 131731462 -30868468 + MIR SINE MIR 77 115 -147 657 282 51 0 chrX 131731487 131731682 -30868248 + MIR SINE MIR 52 256 -6 1554 234 39 30 chrX 131731793 131732225 -30867705 + L1ME3A LINE L1 5728 6163 -7 190 412 100 0 chrX 131732492 131732662 -30867268 - MIR SINE MIR -48 214 28 188 250 54 33 chrX 131732813 131732905 -30867025 - L2 LINE L2 -213 3059 2966 727 260 66 29 chrX 131733505 131733751 -30866179 + MIR SINE MIR 6 260 -2 399 282 65 30 chrX 131733892 131734064 -30865866 - MIR SINE MIR -57 205 29 192 354 73 10 chrX 131735164 131735260 -30864670 - L3b LINE CR1 -5 1578 1477 331 341 7 7 chrX 131736564 131736699 -30863231 + (CCA)n Simple_repeat Simple_repeat 3 137 0 180 111 0 0 chrX 131737351 131737378 -30862552 + (GGGAA)n Simple_repeat Simple_repeat 3 29 0 934 164 0 0 chrX 131737396 131737548 -30862382 + L1MA10 LINE L1 6180 6331 -3 701 276 79 33 chrX 131737548 131737612 -30862318 - L1ME4a LINE L1 -188 5933 5873 1958 136 3 7 chrX 131737612 131737914 -30862016 - AluSx SINE Alu -11 301 1 701 276 79 33 chrX 131737914 131738179 -30861751 - L1ME4a LINE L1 -248 5873 5589 258 292 104 0 chrX 131739373 131739469 -30860461 - MIR SINE MIR -11 251 146 249 33 0 0 chrX 131739541 131739571 -30860359 + (TG)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chrX 131739707 131739727 -30860203 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 2055 100 21 7 chrX 131739727 131740008 -30859922 - AluY SINE Alu -23 288 1 306 0 0 0 chrX 131740187 131740221 -30859709 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1604 140 52 7 chrX 131740221 131740492 -30859438 - AluJo SINE Alu -29 283 1 626 237 59 24 chrX 131740569 131740738 -30859192 - MIR SINE MIR -80 182 8 309 343 134 32 chrX 131740828 131741172 -30858758 + L3 LINE CR1 1084 1462 -115 2172 113 3 0 chrX 131741172 131741482 -30858448 + AluSq SINE Alu 1 311 -2 255 125 0 0 chrX 131741487 131741527 -30858403 + (A)n Simple_repeat Simple_repeat 1 40 0 285 289 0 62 chrX 131742111 131742208 -30857722 + MIR SINE MIR 34 124 -138 2049 91 28 53 chrX 131742458 131742776 -30857154 - AluSx SINE Alu -2 310 1 1718 151 13 27 chrX 131743418 131743716 -30856214 + AluJo SINE Alu 13 306 -6 399 298 13 46 chrX 131743924 131744075 -30855855 + MIR3 SINE MIR 15 160 -48 441 0 0 0 chrX 131744077 131744126 -30855804 + (TG)n Simple_repeat Simple_repeat 2 50 0 960 200 6 17 chrX 131744146 131744326 -30855604 - MER45A DNA AcHobo 0 178 1 357 186 113 10 chrX 131744686 131744783 -30855147 - MIR SINE MIR -69 139 33 201 259 0 0 chrX 131745331 131745394 -30854536 + MIR SINE MIR 101 144 -64 2213 109 0 0 chrX 131745402 131745714 -30854216 - AluSx SINE Alu 0 312 1 586 234 75 48 chrX 131745729 131745956 -30853974 + MIR SINE MIR 18 250 -12 285 75 0 0 chrX 131745962 131746002 -30853928 + (ATG)n Simple_repeat Simple_repeat 3 42 0 276 346 20 20 chrX 131746794 131746895 -30853035 + MIR3 SINE MIR 55 155 -53 226 321 38 18 chrX 131748127 131748238 -30851692 - MIR SINE MIR -62 146 42 387 258 16 31 chrX 131748790 131748918 -30851012 + MER5A DNA MER1_type 16 141 -48 1866 165 0 0 chrX 131748918 131749221 -30850709 - AluJb SINE Alu -9 303 1 1078 135 40 45 chrX 131749221 131749443 -30850487 + THE1C LTR MaLR 155 375 0 1069 171 0 45 chrX 131749443 131749642 -30850288 + AluJb SINE Alu 109 298 -14 1286 97 0 56 chrX 131749642 131749838 -30850092 + AluSq SINE Alu 1 185 -128 1433 282 29 73 chrX 131750061 131750216 -30849714 + L1MC4a LINE L1 5266 5426 -2382 2188 107 10 0 chrX 131750216 131750525 -30849405 + AluSx SINE Alu 1 312 0 1433 282 29 73 chrX 131750525 131751056 -30848874 + L1MC4a LINE L1 5426 5922 -1886 2247 119 0 0 chrX 131751160 131751471 -30848459 - AluSx SINE Alu -1 311 1 2292 95 3 0 chrX 131751475 131751779 -30848151 - AluSp SINE Alu -8 305 1 547 324 88 25 chrX 131751779 131752460 -30847470 - L1P LINE L1 -727 5424 4655 1785 163 0 16 chrX 131752460 131752767 -30847163 - AluJo SINE Alu -10 302 1 547 324 88 25 chrX 131752767 131753056 -30846874 - L1P LINE L1 -1496 4655 4386 182 214 125 18 chrX 131753059 131753115 -30846815 + MER5A DNA MER1_type 128 189 0 416 196 0 69 chrX 131753123 131753225 -30846705 - MER5B DNA MER1_type -77 101 7 341 48 0 0 chrX 131753808 131753850 -30846080 + 5S rRNA rRNA 1 42 -79 1546 163 31 17 chrX 131754316 131754605 -30845325 - AluJo SINE Alu -11 301 9 208 277 0 46 chrX 131754746 131754811 -30845119 + MIR SINE MIR 81 142 -66 514 273 84 0 chrX 131755336 131755490 -30844440 + MIR3 SINE MIR 13 179 -29 596 278 46 6 chrX 131755930 131756103 -30843827 + MIR SINE MIR 42 221 -41 212 308 110 0 chrX 131756345 131756436 -30843494 + L2 LINE L2 3142 3242 -30 216 292 75 25 chrX 131756504 131756624 -30843306 + L2 LINE L2 2856 2981 -291 337 182 30 0 chrX 131756777 131756843 -30843087 + MIR SINE MIR 76 143 -119 266 159 0 0 chrX 131757323 131757367 -30842563 - MIR SINE MIR -114 148 105 212 167 0 0 chrX 131757455 131757491 -30842439 - MIR SINE MIR -110 152 117 189 74 0 0 chrX 131758111 131758138 -30841792 + (CAGCT)n Simple_repeat Simple_repeat 5 31 0 1329 58 0 0 chrX 131758190 131758361 -30841569 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1866 98 42 0 chrX 131758364 131758629 -30841301 - AluSq SINE Alu -37 276 1 934 108 0 8 chrX 131758920 131759050 -30840880 + AluSx SINE Alu 1 129 -183 240 35 0 0 chrX 131759060 131759089 -30840841 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 266 0 0 chrX 131759089 131759153 -30840777 + L1MC4 LINE L1 6640 6703 -1339 1076 117 11 22 chrX 131759154 131759333 -30840597 + AluSx SINE Alu 135 311 -1 244 245 0 0 chrX 131759339 131759388 -30840542 + MER91 DNA MER1_type 127 175 -15 204 354 49 0 chrX 131759441 131759523 -30840407 - MIR3 SINE MIR -19 189 104 357 293 48 20 chrX 131759916 131760063 -30839867 - MIR3 SINE MIR -15 193 43 496 256 109 75 chrX 131761778 131762071 -30837859 + L1MC5 LINE L1 7608 7910 -51 1174 225 23 16 chrX 131762172 131762430 -30837500 - MIR SINE MIR -1 261 2 186 43 0 0 chrX 131762495 131762518 -30837412 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1917 110 0 0 chrX 131762529 131762792 -30837138 - AluSx SINE Alu -49 263 1 636 263 103 36 chrX 131763350 131763574 -30836356 - MIR SINE MIR -1 261 23 1917 131 17 0 chrX 131764460 131764927 -30835003 - AluSx SINE Alu 0 312 1 990 213 23 32 chrX 131765835 131766056 -30833874 + MIR SINE MIR 18 236 -26 635 256 169 10 chrX 131766173 131766368 -30833562 - MIR SINE MIR -21 241 16 1686 149 3 29 chrX 131766744 131767053 -30832877 - L1MB5 LINE L1 -22 6152 5852 410 214 19 48 chrX 131768199 131768302 -30831628 + MER5A DNA MER1_type 90 189 0 313 212 18 80 chrX 131768203 131768316 -30831614 - MER5A DNA MER1_type -83 106 1 * 398 224 48 48 chrX 131771364 131771489 -30828441 - MIR SINE MIR -50 212 88 825 145 31 57 chrX 131772554 131772747 -30827183 + MER53 DNA DNA 1 188 -1 2272 95 0 0 chrX 131773220 131773533 -30826397 - AluSx SINE Alu 0 313 1 225 203 16 16 chrX 131773727 131773791 -30826139 + G-rich Low_complexity Low_complexity 1 64 0 668 310 6 31 chrX 131774601 131774862 -30825068 - MIR SINE MIR -5 257 2 320 220 0 0 chrX 131774983 131775042 -30824888 - L2 LINE L2 -4 3268 3210 2405 65 7 7 chrX 131775199 131775491 -30824439 - AluSx SINE Alu -16 296 5 2293 104 0 7 chrX 131775510 131775808 -30824122 - AluSx SINE Alu -16 296 1 225 293 123 0 chrX 131776067 131776173 -30823757 + L2 LINE L2 3152 3270 -2 1908 138 163 44 chrX 131776277 131776689 -30823241 + MER31B LTR ERV1 5 465 -1 476 214 0 39 chrX 131777442 131777620 -30822310 + CT-rich Low_complexity Low_complexity 3 173 0 1074 171 0 45 chrX 131778305 131778504 -30821426 - AluSg/x SINE Alu -8 302 113 1053 218 8 25 chrX 131778990 131779246 -30820684 + MIR SINE MIR 8 257 -5 316 261 43 26 chrX 131780579 131780694 -30819236 - MIR SINE MIR -72 136 20 189 229 96 60 chrX 131780708 131780791 -30819139 + L2 LINE L2 2721 2806 -508 423 0 0 0 chrX 131781259 131781306 -30818624 + (TG)n Simple_repeat Simple_repeat 2 48 0 2111 151 76 3 chrX 131781538 131781773 -30818157 - MSTA LTR MaLR 0 428 153 1728 85 0 0 chrX 131781773 131781984 -30817946 - AluSg/x SINE Alu -15 295 85 2111 151 76 3 chrX 131781984 131782131 -30817799 - MSTA LTR MaLR -275 153 18 8972 161 47 3 chrX 131782140 131783716 -30816214 - MSTA-int LTR MaLR -6 1645 1 2390 148 62 7 chrX 131783716 131784122 -30815808 - MSTA LTR MaLR 0 428 1 363 288 104 20 chrX 131784422 131784672 -30815258 + L2 LINE L2 2813 3083 -189 445 343 72 41 chrX 131784679 131785195 -30814735 + L2 LINE L2 561 1092 -2222 860 270 224 9 chrX 131785231 131785561 -30814369 + L2 LINE L2 2913 3313 0 293 389 6 23 chrX 131785593 131785768 -30814162 + L2 LINE L2 1178 1349 -1965 484 299 113 50 chrX 131785777 131786899 -30813031 - L1ME LINE L1 -405 5765 4562 245 322 0 0 chrX 131787018 131787077 -30812853 + L2 LINE L2 1858 1916 -1398 333 233 0 0 chrX 131787107 131787180 -30812750 + MLT1H1 LTR MaLR 58 130 -425 742 172 17 11 chrX 131787181 131787361 -30812569 - L1 LINE L1 -1636 4510 4330 1671 182 31 72 chrX 131787366 131787756 -30812174 - MLT1A2 LTR MaLR 0 374 1 293 215 38 13 chrX 131787758 131787837 -30812093 + MLT1F LTR MaLR 191 271 -319 349 144 12 182 chrX 131787966 131788144 -30811786 + MLT1F LTR MaLR 388 555 0 518 307 281 16 chrX 131788153 131788464 -30811466 + L2 LINE L2 1912 2139 -1175 2158 98 28 3 chrX 131788464 131788749 -30811181 + AluSc SINE Alu 1 292 -17 518 307 281 16 chrX 131788749 131789039 -30810891 + L2 LINE L2 2139 2676 -638 924 270 16 24 chrX 131789039 131789291 -30810639 + MIR SINE MIR 1 250 -12 379 143 0 0 chrX 131790053 131790109 -30809821 - MIR SINE MIR -75 133 78 891 253 59 32 chrX 131790116 131790369 -30809561 - MIR SINE MIR 0 262 3 222 37 0 0 chrX 131790889 131790916 -30809014 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 588 281 0 0 chrX 131790917 131791038 -30808892 - L2 LINE L2 -15 3257 3137 332 280 71 103 chrX 131791078 131791456 -30808474 + L2 LINE L2 2560 2925 -389 510 314 17 11 chrX 131791674 131791849 -30808081 - MIR SINE MIR -4 258 83 251 254 0 17 chrX 131793268 131793327 -30806603 + MIR SINE MIR 82 139 -69 502 208 104 8 chrX 131794176 131794301 -30805629 - MIR SINE MIR -78 184 48 1101 204 12 75 chrX 131794433 131794688 -30805242 + MIR SINE MIR 3 241 -21 1385 154 158 16 chrX 131795006 131795259 -30804671 - AluJo SINE Alu -23 289 1 1003 226 52 8 chrX 131795379 131795627 -30804303 + MIR SINE MIR 4 262 0 425 273 0 33 chrX 131796134 131796255 -30803675 - L2 LINE L2 -1 3271 3155 236 260 0 0 chrX 131796568 131796618 -30803312 - L2 LINE L2 -13 3259 3210 1060 156 33 0 chrX 131796722 131796902 -30803028 + MER5A DNA MER1_type 2 187 -2 257 248 195 26 chrX 131797120 131797233 -30802697 - MIR3 SINE MIR -54 154 23 354 45 0 0 chrX 131798123 131798167 -30801763 + (TG)n Simple_repeat Simple_repeat 1 44 0 385 335 76 0 chrX 131798425 131798473 -30801457 + MIR SINE MIR 92 135 -127 454 141 13 0 chrX 131798473 131798551 -30801379 - MER116 DNA Mariner 0 80 2 385 335 76 0 chrX 131798551 131798660 -30801270 + MIR SINE MIR 135 261 -1 504 305 52 117 chrX 131798932 131799159 -30800771 - L2 LINE L2 0 3272 3091 4049 99 19 80 chrX 131799159 131799834 -30800096 + MER51A LTR ERV1 1 634 0 504 305 52 117 chrX 131799834 131800085 -30799845 - L2 LINE L2 -181 3091 2825 194 175 100 0 chrX 131800175 131800215 -30799715 - MER5A DNA MER1_type -78 111 68 462 147 20 10 chrX 131800227 131800329 -30799601 + CT-rich Low_complexity Low_complexity 1 103 0 1077 97 6 11 chrX 131800329 131800505 -30799425 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 201 175 0 0 chrX 131800523 131800563 -30799367 + CT-rich Low_complexity Low_complexity 1 40 0 1065 150 0 0 chrX 131800563 131800716 -30799214 - FAM SINE Alu -12 173 21 367 149 0 131 chrX 131800738 131800845 -30799085 - L1ME3A LINE L1 -6 6164 6070 238 283 17 2 chrX 131800847 131800914 -30799016 + MER115 DNA AcHobo 1 61 -632 1789 216 35 130 chrX 131801443 131802301 -30797629 - L1ME1 LINE L1 -88 6147 5378 287 253 12 0 chrX 131802298 131802381 -30797549 - L1ME2 LINE L1 -14 6150 6067 * 697 208 40 0 chrX 131802393 131802566 -30797364 - L1ME1 LINE L1 -2906 3309 3130 2475 136 0 39 chrX 131802567 131802798 -30797132 + MER57A LTR ERV1 8 218 -185 1973 161 0 16 chrX 131802798 131803115 -30796815 - AluSx SINE Alu 0 312 1 2475 136 0 39 chrX 131803115 131803295 -30796635 + MER57A LTR ERV1 218 403 0 3176 225 56 26 chrX 131803295 131803751 -30796179 - L1ME1 LINE L1 -3081 3134 2693 1943 149 0 17 chrX 131803751 131804071 -30795859 - AluSx SINE Alu 0 318 4 3176 225 56 26 chrX 131804071 131804614 -30795316 - L1ME1 LINE L1 -3522 2693 2146 2083 144 7 0 chrX 131804614 131804913 -30795017 - AluSq SINE Alu -12 301 1 3176 225 56 26 chrX 131804913 131804942 -30794988 - L1ME1 LINE L1 -4069 2146 2119 2731 166 64 5 chrX 131804920 131805479 -30794451 - L1MD3 LINE L1 0 8064 7473 * 496 220 9 0 chrX 131805483 131805592 -30794338 - MLT1F1 LTR MaLR -446 121 12 3637 259 97 67 chrX 131805595 131805863 -30794067 - L1ME1 LINE L1 -4268 2128 1870 345 68 0 162 chrX 131805863 131805897 -30794033 - L1MB5 LINE L1 -8 6166 6128 180 0 0 0 chrX 131805897 131805917 -30794013 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1835 132 21 7 chrX 131805917 131806197 -30793733 - AluSx SINE Alu -28 284 1 345 68 0 162 chrX 131806197 131806235 -30793695 - L1MB5 LINE L1 -44 6130 6105 3637 259 97 67 chrX 131806235 131806800 -30793130 - L1ME1 LINE L1 -4526 1870 1323 1886 166 46 24 chrX 131806800 131807211 -30792719 - L1MB8 LINE L1 0 6178 5759 3637 259 97 67 chrX 131807211 131808407 -30791523 - L1ME1 LINE L1 -5073 1323 37 1177 299 29 82 chrX 131808408 131809058 -30790872 - L2 LINE L2 -564 2750 2135 23 33 0 0 chrX 131810144 131810174 -30789756 + AT_rich Low_complexity Low_complexity 1 30 0 1463 248 66 53 chrX 131810451 131810906 -30789024 - LTR16B LTR ERVL -3 461 1 220 375 0 0 chrX 131811508 131811580 -30788350 + L2 LINE L2 3198 3269 -3 485 217 125 0 chrX 131811614 131811734 -30788196 + L2 LINE L2 3179 3313 0 222 227 107 27 chrX 131811935 131812010 -30787920 - L2 LINE L2 -248 3065 2985 358 292 53 0 chrX 131813216 131813329 -30786601 - MIR SINE MIR -27 235 117 1956 140 29 23 chrX 131813331 131813639 -30786291 + AluSx SINE Alu 1 310 -2 294 95 0 0 chrX 131813661 131813703 -30786227 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 197 286 143 24 chrX 131813703 131813787 -30786143 - MIR SINE MIR -132 130 37 266 233 117 48 chrX 131815707 131815810 -30784120 - L2 LINE L2 -8 3264 3155 1553 182 120 9 chrX 131815930 131816254 -30783676 + MLT1A1 LTR MaLR 6 365 0 283 246 31 0 chrX 131816431 131816496 -30783434 + L2 LINE L2 3205 3271 -1 1683 156 0 3 chrX 131816597 131816879 -30783051 + AluSx SINE Alu 1 281 -31 248 77 26 0 chrX 131816881 131816920 -30783010 + (GA)n Simple_repeat Simple_repeat 2 41 0 355 194 68 48 chrX 131816920 131817023 -30782907 - MIR3 SINE MIR -93 115 11 193 313 0 0 chrX 131817411 131817459 -30782471 - L2 LINE L2 -88 3184 3137 614 254 38 32 chrX 131817998 131818183 -30781747 + MIR SINE MIR 25 210 -52 216 316 51 13 chrX 131818353 131818432 -30781498 + L3 LINE CR1 430 511 -1066 848 276 137 7 chrX 131818689 131818982 -30780948 + LTR16C LTR ERVL 161 491 0 351 223 269 8 chrX 131819131 131819261 -30780669 + MER5A DNA MER1_type 26 189 0 1480 174 104 95 chrX 131819320 131819709 -30780221 + MLT1C LTR MaLR 1 396 -71 493 118 0 0 chrX 131819709 131819785 -30780145 - L1PA8 LINE L1 0 6172 6097 1480 174 104 95 chrX 131819785 131819856 -30780074 + MLT1C LTR MaLR 396 465 -2 990 346 29 29 chrX 131819960 131820538 -30779392 + L3 LINE CR1 590 1167 -410 518 262 91 118 chrX 131820559 131820899 -30779031 - L2 LINE L2 -18 3254 2924 321 315 0 0 chrX 131820931 131821039 -30778891 - L2 LINE L2 -583 2731 2624 1908 177 21 129 chrX 131821053 131821120 -30778810 - MLT1D LTR MaLR 0 505 432 1215 154 106 75 chrX 131821120 131821247 -30778683 + AluJo SINE Alu 1 123 -189 1910 132 0 3 chrX 131821247 131821536 -30778394 - AluSx SINE Alu -20 292 5 1215 154 106 75 chrX 131821536 131821700 -30778230 + AluJo SINE Alu 123 301 -11 1908 177 21 129 chrX 131821700 131822068 -30777862 - MLT1D LTR MaLR -73 432 142 1941 141 0 3 chrX 131822068 131822365 -30777565 - AluSx SINE Alu -16 296 1 1908 177 21 129 chrX 131822365 131822494 -30777436 - MLT1D LTR MaLR -363 142 1 596 265 48 16 chrX 131822502 131822691 -30777239 - MIR SINE MIR -56 206 12 229 256 11 56 chrX 131822767 131822857 -30777073 + L3 LINE CR1 1240 1325 -252 507 233 147 0 chrX 131822879 131822995 -30776935 - MIR3 SINE MIR -6 202 70 2034 116 0 0 chrX 131823031 131823323 -30776607 - AluSx SINE Alu 0 312 21 266 319 44 11 chrX 131823324 131823415 -30776515 + L3 LINE CR1 1369 1462 -115 463 170 23 96 chrX 131823558 131823731 -30776199 - L1ME1 LINE L1 -2 6332 6024 * 1173 217 110 53 chrX 131823726 131824100 -30775830 - L1MD2 LINE L1 -3 6356 5962 2213 97 3 3 chrX 131824405 131824715 -30775215 - AluSx SINE Alu -2 310 1 509 141 0 0 chrX 131824757 131824842 -30775088 + L1MA7 LINE L1 6145 6229 -62 1889 156 19 3 chrX 131824848 131825155 -30774775 + MER2 DNA MER2_type 34 345 0 369 92 15 0 chrX 131825155 131825220 -30774710 + L1MA7 LINE L1 6226 6291 0 522 256 8 8 chrX 131825279 131825408 -30774522 - L1MD2 LINE L1 -2001 5807 5679 251 267 0 0 chrX 131825891 131825951 -30773979 - MIR SINE MIR -79 129 70 1983 127 3 7 chrX 131826298 131826597 -30773333 - AluSx SINE Alu -14 298 1 250 345 0 45 chrX 131826662 131826772 -30773158 - MIR SINE MIR -73 135 31 1225 227 140 99 chrX 131827294 131827850 -30772080 + MLT1G LTR MaLR 1 579 -16 2070 75 43 0 chrX 131828044 131828326 -30771604 + AluY SINE Alu 18 311 0 810 88 5 182 chrX 131828360 131828552 -30771378 + AluSg/x SINE Alu 137 294 -18 950 155 76 91 chrX 131829668 131829932 -30769998 - MIR SINE MIR -1 261 2 996 215 15 48 chrX 131830038 131830277 -30769653 - MIR SINE MIR -2 260 37 297 110 24 146 chrX 131830295 131830377 -30769553 - L2 LINE L2 0 3272 3201 699 279 37 0 chrX 131830387 131830577 -30769353 + L2 LINE L2 2230 2426 -888 1856 170 67 20 chrX 131830577 131830919 -30769011 + MLT1A1 LTR MaLR 1 358 -7 943 278 265 9 chrX 131830920 131831466 -30768464 + L2 LINE L2 2422 2827 -486 876 222 191 12 chrX 131831466 131831581 -30768349 + AluYa8 SINE Alu 4 97 -203 441 0 0 0 chrX 131831581 131831630 -30768300 + (CA)n Simple_repeat Simple_repeat 2 50 0 876 222 191 12 chrX 131831630 131831766 -30768164 + AluYa8 SINE Alu 97 300 0 943 278 265 9 chrX 131831766 131831915 -30768015 + L2 LINE L2 2827 3295 -18 444 266 129 0 chrX 131832103 131832227 -30767703 + MIR SINE MIR 46 185 -77 * 1678 249 32 28 chrX 131832225 131832809 -30767121 + L2 LINE L2 2728 3313 0 263 281 0 0 chrX 131832899 131832963 -30766967 + L2 LINE L2 3203 3266 -6 2180 171 11 3 chrX 131833133 131833495 -30766435 + MLT1A1 LTR MaLR 1 365 0 2116 199 35 4 chrX 131833566 131833897 -30766033 + Charlie4a DNA MER1_type 19 369 -1592 1052 163 0 0 chrX 131833897 131834057 -30765873 + FRAM SINE Alu 2 161 -5 2116 199 35 4 chrX 131834057 131834188 -30765742 + Charlie4a DNA MER1_type 369 495 -13 509 287 78 66 chrX 131835006 131835428 -30764502 - L2 LINE L2 -2277 1037 611 1149 270 128 13 chrX 131835599 131836156 -30763774 + L2 LINE L2 2220 3313 0 587 198 10 132 chrX 131836317 131836399 -30763531 + MER5B DNA MER1_type 1 47 -131 1783 119 24 17 chrX 131836399 131836692 -30763238 + AluJo SINE Alu 4 298 -14 587 198 10 132 chrX 131836692 131836806 -30763124 + MER5B DNA MER1_type 47 173 -5 472 167 244 58 chrX 131836820 131836976 -30762954 + MER5A DNA MER1_type 4 188 -1 396 0 0 0 chrX 131838365 131838409 -30761521 + (CA)n Simple_repeat Simple_repeat 2 45 0 226 274 9 38 chrX 131838555 131838661 -30761269 + CT-rich Low_complexity Low_complexity 1 103 0 1359 209 72 27 chrX 131838698 131839071 -30760859 - MLT1B LTR MaLR 0 390 1 385 325 74 64 chrX 131839099 131839763 -30760167 - L2 LINE L2 -107 3165 2292 1113 226 68 27 chrX 131839782 131839910 -30760020 + L1ME1 LINE L1 444 565 -5831 1473 188 15 98 chrX 131839910 131840308 -30759622 + MLT1A1 LTR MaLR 1 365 0 1113 226 68 27 chrX 131840308 131840475 -30759455 + L1ME1 LINE L1 565 751 -5645 922 186 140 5 chrX 131840475 131840668 -30759262 - MER20 DNA MER1_type 0 219 1 8208 223 52 26 chrX 131840669 131840909 -30759021 + L1ME1 LINE L1 746 978 -5237 1865 84 91 4 chrX 131840909 131841183 -30758747 - AluYa5 SINE Alu -13 298 1 8208 223 52 26 chrX 131841183 131843244 -30756686 + L1ME1 LINE L1 978 2984 -3231 3350 127 50 0 chrX 131843244 131843283 -30756647 - MLT2B1 LTR ERVL 0 520 484 909 83 0 0 chrX 131843283 131843415 -30756515 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 3350 127 50 0 chrX 131843415 131843870 -30756060 - MLT2B1 LTR ERVL -36 484 1 8208 223 52 26 chrX 131843870 131843898 -30756032 + L1ME1 LINE L1 2984 3010 -3205 7544 39 1 2 chrX 131843898 131845398 -30754532 + L1PA5 LINE L1 4656 6154 0 8208 223 52 26 chrX 131845398 131846720 -30753210 + L1ME1 LINE L1 3010 4460 -1755 5210 152 49 8 chrX 131846716 131847973 -30751957 + L1MB7 LINE L1 4946 6244 -9 * 1017 171 15 0 chrX 131847975 131848174 -30751756 + L1ME1 LINE L1 5352 5553 -682 1348 153 46 0 chrX 131848178 131848440 -30751490 + L1MB3 LINE L1 5909 6182 -1 259 88 53 35 chrX 131848457 131848514 -30751416 + L1MB4 LINE L1 6123 6180 0 2011 186 37 52 chrX 131848521 131849004 -30750926 + L1ME1 LINE L1 5543 6018 -217 474 215 46 114 chrX 131849065 131849284 -30750646 + L1ME1 LINE L1 6025 6228 -7 227 213 49 49 chrX 131849297 131849358 -30750572 + MIR3 SINE MIR 138 198 -10 579 279 74 85 chrX 131850670 131851267 -30748663 - L2 LINE L2 0 3272 2638 669 205 68 58 chrX 131851384 131851574 -30748356 + MLT1C LTR MaLR 1 192 -313 1417 160 19 30 chrX 131851575 131851838 -30748092 + AluJo SINE Alu 18 277 -35 724 243 67 67 chrX 131851876 131852003 -30747927 + MLT1C LTR MaLR 213 339 -128 739 154 0 0 chrX 131852003 131852133 -30747797 - L1MA7 LINE L1 -1 6290 6161 724 243 67 67 chrX 131852133 131852260 -30747670 + MLT1C LTR MaLR 338 467 0 620 254 14 14 chrX 131854227 131854365 -30745565 + MIR SINE MIR 16 153 -55 308 247 74 12 chrX 131854638 131854719 -30745211 - L2 LINE L2 -1 3271 3186 653 277 113 30 chrX 131854768 131854999 -30744931 - MIR SINE MIR -3 259 10 977 83 0 0 chrX 131855089 131855221 -30744709 - AluY SINE Alu -14 297 166 1782 116 67 43 chrX 131855269 131855596 -30744334 + THE1C LTR MaLR 1 335 -40 814 88 9 0 chrX 131855594 131855707 -30744223 - MSTA LTR MaLR -314 114 1 * 851 259 0 36 chrX 131855801 131855863 -30744067 - MIR SINE MIR -31 231 168 1378 181 7 138 chrX 131855863 131856236 -30743694 - MLT1A1 LTR MaLR 0 365 51 2208 99 0 3 chrX 131856236 131856540 -30743390 + AluSp SINE Alu 1 303 -10 1378 181 7 138 chrX 131856540 131856586 -30743344 - MLT1A1 LTR MaLR -314 51 1 851 259 0 36 chrX 131856586 131856743 -30743187 - MIR SINE MIR -94 168 20 3705 133 8 0 chrX 131857121 131857641 -30742289 - MER1A DNA MER1_type 0 529 6 295 257 57 14 chrX 131857725 131857795 -30742135 - L2 LINE L2 -6 3307 3235 1791 152 0 36 chrX 131858146 131858449 -30741481 + AluJo SINE Alu 1 292 -20 763 173 220 0 chrX 131858661 131858829 -30741101 + MER3 DNA MER1_type 3 207 -2 196 246 223 62 chrX 131859029 131859159 -30740771 - MIR SINE MIR -65 197 47 2285 88 7 0 chrX 131859192 131859537 -30740393 + AluSx SINE Alu 3 349 0 536 199 43 43 chrX 131859758 131859899 -30740031 - L2 LINE L2 0 3313 3173 265 315 77 39 chrX 131860071 131860201 -30739729 - L2 LINE L2 0 3272 3138 27 29 0 0 chrX 131861476 131861510 -30738420 + GC_rich Low_complexity Low_complexity 1 34 0 200 176 0 0 chrX 131862182 131862216 -30737714 + (CCGGG)n Simple_repeat Simple_repeat 1 34 0 200 208 19 0 chrX 131865664 131865717 -30734213 + (TG)n Simple_repeat Simple_repeat 1 54 0 321 331 21 7 chrX 131866793 131866938 -30732992 + L1MC5 LINE L1 7720 7866 -95 277 247 11 54 chrX 131867652 131867745 -30732185 - MIR3 SINE MIR -11 197 109 422 281 140 24 chrX 131869028 131869192 -30730738 - MIR3 SINE MIR -7 201 19 273 150 0 50 chrX 131869594 131869674 -30730256 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 258 81 0 0 chrX 131869914 131869951 -30729979 + (CTG)n Simple_repeat Simple_repeat 2 38 0 2427 96 0 0 chrX 131871289 131871590 -30728340 + AluSx SINE Alu 1 301 -11 1645 129 0 120 chrX 131871952 131872293 -30727637 - AluSx SINE Alu -1 301 2 352 206 55 0 chrX 131873419 131873492 -30726438 - MER58A DNA MER1_type -5 219 143 388 182 39 0 chrX 131873581 131873658 -30726272 - MER58A DNA MER1_type 0 121 42 538 311 58 16 chrX 131873815 131874067 -30725863 + MIR SINE MIR 1 262 0 372 297 42 36 chrX 131874063 131874228 -30725702 - MIR SINE MIR -64 198 33 * 965 227 68 65 chrX 131874242 131874581 -30725349 + MLT1A2 LTR MaLR 1 340 -34 254 254 17 85 chrX 131874873 131874991 -30724939 + MIR SINE MIR 27 136 -72 337 298 9 28 chrX 131875334 131875460 -30724470 + MIR SINE MIR 7 137 -71 445 237 15 37 chrX 131875500 131875635 -30724295 - MIR3 SINE MIR -4 204 73 413 294 182 0 chrX 131875637 131875780 -30724150 - MIR SINE MIR -5 257 89 1973 105 59 39 chrX 131876547 131876853 -30723077 + AluSx SINE Alu 1 312 0 252 293 28 5 chrX 131877510 131877636 -30722294 + MIR SINE MIR 90 220 -42 189 157 0 118 chrX 131877749 131877800 -30722130 - L2 LINE L2 0 3313 3269 287 250 121 36 chrX 131877927 131878067 -30721863 - L2 LINE L2 -207 3065 2914 204 206 77 32 chrX 131878053 131878135 -30721795 - MIR SINE MIR -25 183 95 * 1081 223 36 4 chrX 131880288 131880535 -30719395 - MIR SINE MIR 0 262 8 392 280 0 0 chrX 131880574 131880667 -30719263 - L3 LINE CR1 -110 1467 1375 213 39 0 0 chrX 131880992 131881018 -30718912 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2246 90 0 62 chrX 131881913 131882234 -30717696 - AluSx SINE Alu -11 301 1 326 333 0 8 chrX 131882388 131882505 -30717425 - MIR3 SINE MIR -49 159 44 1631 110 144 0 chrX 131882775 131883039 -30716891 - AluSx SINE Alu 0 302 1 909 156 60 200 chrX 131883761 131884196 -30715734 - MLT1A2 LTR MaLR 0 374 1 425 268 16 16 chrX 131884317 131884444 -30715486 + MIR3 SINE MIR 12 138 -70 403 246 100 8 chrX 131884444 131884574 -30715356 + L2 LINE L2 3166 3307 -6 798 274 93 0 chrX 131884921 131885108 -30714822 + MIR SINE MIR 2 215 -47 441 0 0 0 chrX 131885108 131885157 -30714773 + (TG)n Simple_repeat Simple_repeat 2 50 0 798 274 93 0 chrX 131885157 131885195 -30714735 + MIR SINE MIR 215 248 -14 318 267 50 8 chrX 131885613 131885733 -30714197 + MIR3 SINE MIR 60 184 -24 398 293 35 20 chrX 131886550 131886716 -30713214 + MIR SINE MIR 32 192 -62 1148 214 13 13 chrX 131886723 131886961 -30712969 + MER8 DNA MER2_type 2 239 0 1845 244 68 30 chrX 131887344 131887876 -30712054 + MLT1E LTR MaLR 14 565 -28 2141 137 16 0 chrX 131887902 131888208 -30711722 - AluSx SINE Alu -1 311 1 376 273 82 16 chrX 131888466 131888660 -30711270 + L1ME3 LINE L1 5734 5940 -222 2318 104 7 0 chrX 131888727 131889034 -30710896 + AluSc SINE Alu 1 309 0 595 247 68 21 chrX 131889054 131889244 -30710686 + L2 LINE L2 2255 2453 -861 5667 166 7 19 chrX 131889257 131890766 -30709164 - L1PA16 LINE L1 -23 6143 4617 2421 113 11 8 chrX 131890766 131891129 -30708801 + THE1B LTR MaLR 1 364 0 5667 166 7 19 chrX 131891129 131891594 -30708336 - L1PA16 LINE L1 -1549 4617 4194 2358 84 0 7 chrX 131891594 131891892 -30708038 - AluY SINE Alu -15 296 1 5667 166 7 19 chrX 131891892 131891939 -30707991 - L1PA16 LINE L1 -1972 4194 4148 1702 252 56 24 chrX 131891942 131892557 -30707373 + L2 LINE L2 2444 3074 -239 1865 160 17 3 chrX 131893505 131893805 -30706125 - AluJo SINE Alu -3 309 6 1026 173 9 31 chrX 131894730 131894956 -30704974 + MER33 DNA MER1_type 5 225 -99 637 280 0 6 chrX 131894959 131895134 -30704796 + L1MA10 LINE L1 6159 6332 -2 398 62 88 38 chrX 131895183 131895263 -30704667 + MER33 DNA MER1_type 280 363 0 267 232 146 0 chrX 131895280 131895362 -30704568 - MIR SINE MIR -65 143 50 318 207 0 0 chrX 131896063 131896121 -30703809 - MIR SINE MIR -20 242 185 250 217 33 0 chrX 131897268 131897328 -30702602 - L2 LINE L2 -219 3053 2992 950 262 52 0 chrX 131897353 131897582 -30702348 - MIR SINE MIR -20 242 2 2033 137 4 0 chrX 131897759 131898075 -30701855 + AluSx SINE Alu 6 322 0 1828 78 0 0 chrX 131899795 131900014 -30699916 + AluSx SINE Alu 1 219 -93 705 123 0 0 chrX 131900014 131900128 -30699802 + AluSg/x SINE Alu 188 301 -11 247 242 91 0 chrX 131900477 131900543 -30699387 + L2 LINE L2 3180 3251 -21 612 293 35 23 chrX 131900562 131900821 -30699109 - MIR SINE MIR 0 262 1 937 266 22 19 chrX 131901464 131901776 -30698154 + L2 LINE L2 2997 3309 -4 793 173 7 0 chrX 131902006 131902145 -30697785 - L1PA16 LINE L1 -2 6164 6025 1074 187 0 8 chrX 131902345 131902557 -30697373 + MIR SINE MIR 56 262 0 228 260 106 81 chrX 131902710 131902833 -30697097 + L2 LINE L2 3168 3293 -20 2319 112 0 0 chrX 131902895 131903189 -30696741 - AluSx SINE Alu -18 294 1 589 282 111 1 chrX 131903440 131903717 -30696213 - L2 LINE L2 -227 3086 2783 2552 75 0 0 chrX 131904183 131904490 -30695440 + AluY SINE Alu 1 307 -4 205 167 42 42 chrX 131904837 131904885 -30695045 + L2 LINE L2 3254 3301 -12 367 263 32 11 chrX 131904888 131904983 -30694947 + MLT1J1 LTR MaLR 66 162 -284 1329 215 71 14 chrX 131905006 131905359 -30694571 + MLT1A2 LTR MaLR 1 373 -1 430 269 8 8 chrX 131905438 131905557 -30694373 + MLT1I LTR MaLR 291 409 0 612 260 126 13 chrX 131906368 131906599 -30693331 - MIR SINE MIR -4 258 2 449 246 65 7 chrX 131906739 131906877 -30693053 - MIR SINE MIR -49 213 68 320 211 0 0 chrX 131908005 131908076 -30691854 - MER96 DNA MER1_type? 0 175 105 1360 83 11 6 chrX 131908288 131908469 -30691461 + AluSg/x SINE Alu 121 302 -10 385 281 109 22 chrX 131908524 131908745 -30691185 + MIR SINE MIR 21 211 -51 693 24 0 0 chrX 131909089 131909172 -30690758 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 350 323 70 25 chrX 131909172 131909373 -30690557 - L2 LINE L2 -23 3290 3081 257 278 43 26 chrX 131909567 131909682 -30690248 - L2 LINE L2 -553 2761 2645 734 205 48 0 chrX 131909729 131909895 -30690035 + MER53 DNA DNA 15 188 -1 286 303 40 7 chrX 131909900 131910052 -30689878 - L2 LINE L2 -694 2620 2464 2182 96 0 7 chrX 131910605 131910911 -30689019 - AluSc SINE Alu 0 304 1 1381 49 6 6 chrX 131911818 131911982 -30687948 - AluSx SINE Alu -137 175 12 918 135 21 16 chrX 131911985 131912161 -30687769 - MER61A LTR ERV1 -144 357 3 1082 87 174 63 chrX 131912218 131912425 -30687505 + MER30 DNA MER1_type 1 230 0 861 174 14 0 chrX 131912433 131912577 -30687353 - MER58B DNA MER1_type 0 341 196 2573 73 0 0 chrX 131912577 131912879 -30687051 + AluSg SINE Alu 1 302 -8 871 291 102 27 chrX 131913006 131913385 -30686545 - L2 LINE L2 -1133 2181 1761 2434 83 3 3 chrX 131913385 131913687 -30686243 + AluSq SINE Alu 12 313 0 871 291 102 27 chrX 131913687 131913758 -30686172 - L2 LINE L2 -1553 1761 1697 2713 135 31 11 chrX 131913851 131914309 -30685621 - MLT1C LTR MaLR 0 467 1 348 114 34 57 chrX 131915215 131915303 -30684627 - L1ME4a LINE L1 -1 6120 6035 402 275 53 48 chrX 131915505 131915712 -30684218 - L1ME4a LINE L1 -89 6032 5825 397 273 117 26 chrX 131915845 131915999 -30683931 - L1ME4a LINE L1 -464 5657 5490 320 348 20 89 chrX 131916018 131916311 -30683619 - L2 LINE L2 -33 3239 2967 284 143 0 0 chrX 131916354 131916396 -30683534 + 5S rRNA rRNA 1 42 -79 3568 126 43 7 chrX 131916550 131916578 -30683352 - L1MB2 LINE L1 -5 6166 6140 2297 86 30 0 chrX 131916578 131916879 -30683051 + AluSg SINE Alu 1 310 0 3568 126 43 7 chrX 131916879 131917413 -30682517 - L1MB2 LINE L1 -31 6140 5584 224 306 47 0 chrX 131917449 131917534 -30682396 + L3 LINE CR1 914 1002 -575 249 276 152 71 chrX 131917656 131918065 -30681865 - L2 LINE L2 -1 3271 2830 261 237 9 18 chrX 131918378 131918492 -30681438 + CT-rich Low_complexity Low_complexity 3 115 0 2251 96 0 26 chrX 131918504 131918817 -30681113 + AluSx SINE Alu 1 305 -7 233 254 17 17 chrX 131918867 131918926 -30681004 + L2 LINE L2 3206 3264 -8 351 261 131 45 chrX 131919164 131919281 -30680649 + MIR SINE MIR 14 152 -110 2387 84 0 0 chrX 131919281 131919578 -30680352 + AluSg SINE Alu 1 297 -13 351 261 131 45 chrX 131919578 131919636 -30680294 + MIR SINE MIR 152 204 -58 693 278 85 95 chrX 131919706 131920309 -30679621 + L2 LINE L2 2705 3311 -2 397 229 76 8 chrX 131920615 131920733 -30679197 - MIR SINE MIR -12 250 125 288 143 36 0 chrX 131920733 131920789 -30679141 + L1MA9 LINE L1 6255 6312 0 576 200 8 31 chrX 131920791 131920921 -30679009 - MIR SINE MIR -128 134 8 1225 272 108 67 chrX 131921128 131921276 -30678654 - L2 LINE L2 -337 2977 2836 618 224 98 23 chrX 131921276 131921450 -30678480 + MER5A DNA MER1_type 3 189 0 1225 272 108 67 chrX 131921450 131921602 -30678328 - L2 LINE L2 -478 2836 2692 1552 157 30 40 chrX 131921602 131921902 -30678028 + AluJb SINE Alu 1 297 -15 1225 272 108 67 chrX 131921902 131922391 -30677539 - L2 LINE L2 -622 2692 2155 341 278 130 0 chrX 131922427 131922542 -30677388 + MIR3 SINE MIR 69 198 -10 916 128 0 0 chrX 131928273 131928398 -30671532 - AluJb SINE Alu -187 125 1 217 314 59 42 chrX 131928760 131928878 -30671052 + MIR SINE MIR 20 139 -69 289 238 28 175 chrX 131931193 131931336 -30668594 + MIR SINE MIR 82 204 -4 306 319 7 35 chrX 131931392 131931533 -30668397 - L3b LINE CR1 -219 1364 1228 779 237 85 34 chrX 131932535 131932771 -30667159 - MIR SINE MIR -7 255 8 477 301 12 31 chrX 131932888 131933051 -30666879 + MIR SINE MIR 1 160 -102 372 59 0 0 chrX 131934272 131934323 -30665607 + (GA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chrX 131934398 131934425 -30665505 + (CA)n Simple_repeat Simple_repeat 2 28 0 253 215 38 0 chrX 131934427 131934506 -30665424 + (TA)n Simple_repeat Simple_repeat 1 82 0 2193 111 3 0 chrX 131934986 131935284 -30664646 + AluSx SINE Alu 1 299 -13 1491 147 30 9 chrX 131936942 131937173 -30662757 + MER46A DNA MER2_type 1 236 0 693 278 196 2 chrX 131937762 131938176 -30661754 + L1MC4 LINE L1 7549 8042 0 355 316 90 13 chrX 131938895 131939050 -30660880 - MER5A DNA MER1_type -1 188 22 434 230 91 32 chrX 131939103 131939244 -30660686 + MIR SINE MIR 1 146 -62 775 229 129 0 chrX 131940611 131940821 -30659109 - MIR SINE MIR -20 242 6 5267 72 12 13 chrX 131941936 131942291 -30657639 + L1PA8 LINE L1 5475 5830 -342 2045 126 0 17 chrX 131942291 131942592 -30657338 + AluSx SINE Alu 1 296 -16 5267 72 12 13 chrX 131942592 131942927 -30657003 + L1PA8 LINE L1 5830 6164 -8 353 284 92 28 chrX 131943313 131943454 -30656476 + MER5B DNA MER1_type 29 178 0 272 279 8 66 chrX 131943812 131943934 -30655996 + L1MC4a LINE L1 5809 5923 -1885 931 172 161 0 chrX 131944003 131944050 -30655880 - MER3 DNA MER1_type 0 209 171 186 71 0 0 chrX 131944050 131944078 -30655852 + (TTAAA)n Simple_repeat Simple_repeat 1 28 0 931 172 161 0 chrX 131944078 131944210 -30655720 - MER3 DNA MER1_type -38 171 1 2096 71 119 0 chrX 131944519 131944787 -30655143 + AluY SINE Alu 1 300 -1 627 296 64 10 chrX 131945051 131945178 -30654752 + MIR SINE MIR 20 164 -98 1070 197 154 5 chrX 131945178 131945386 -30654544 + MER8 DNA MER2_type 1 239 0 627 296 64 10 chrX 131945386 131945461 -30654469 + MIR SINE MIR 164 233 -29 22 35 0 0 chrX 131945490 131945519 -30654411 + AT_rich Low_complexity Low_complexity 1 29 0 684 261 72 0 chrX 131945719 131945914 -30654016 - MIR SINE MIR -49 213 5 1221 110 6 6 chrX 131946135 131946317 -30653613 + AluSg/x SINE Alu 129 310 -2 531 299 39 0 chrX 131947030 131947157 -30652773 + L2 LINE L2 3141 3272 0 265 100 40 0 chrX 131947800 131947850 -30652080 + A-rich Low_complexity Low_complexity 3 54 0 2835 10 0 10 chrX 131947935 131948248 -30651682 + AluYb8 SINE Alu 1 310 -8 301 243 14 14 chrX 131948298 131948368 -30651562 + MER5B DNA MER1_type 109 178 0 8104 20 20 2 chrX 131951272 131952415 -30647515 - L1PA3 LINE L1 -3 6152 5000 1198 203 105 10 chrX 131952659 131952954 -30646976 - MER33 DNA MER1_type -1 323 1 1633 194 13 3 chrX 131956652 131956951 -30642979 + AluJb SINE Alu 1 302 -10 760 261 35 39 chrX 131957747 131958007 -30641923 - MIR SINE MIR -2 260 2 285 225 258 11 chrX 132009602 132009691 -30590239 - MIR SINE MIR -89 173 63 6893 16 1 6 chrX 132009846 132010651 -30589279 - L1PA2 LINE L1 0 6155 5355 30 45 0 0 chrX 132011506 132011550 -30588380 + AT_rich Low_complexity Low_complexity 1 44 0 2168 99 0 0 chrX 132012198 132012542 -30587388 + AluSx SINE Alu 1 344 0 31 76 0 0 chrX 132012830 132012896 -30587034 + AT_rich Low_complexity Low_complexity 1 66 0 588 250 35 49 chrX 132013085 132013299 -30586631 - MIR SINE MIR -50 212 5 765 326 72 21 chrX 132013858 132014400 -30585530 - L2 LINE L2 -18 3295 2723 572 227 88 72 chrX 132014419 132014613 -30585317 - MIR SINE MIR 0 262 66 2213 103 0 14 chrX 132014631 132014923 -30585007 - AluSc SINE Alu -21 288 1 463 222 132 21 chrX 132014925 132015069 -30584861 - L2 LINE L2 -601 2713 2554 2200 120 0 0 chrX 132016660 132016959 -30582971 - AluSx SINE Alu -13 299 1 2564 105 8 6 chrX 132017095 132017458 -30582472 - THE1B LTR MaLR 0 364 1 229 266 21 11 chrX 132017978 132018072 -30581858 - L1MC4a LINE L1 -5 7803 7709 2343 174 57 30 chrX 132018231 132018759 -30581171 - L1ME2 LINE L1 0 6164 5623 259 309 110 42 chrX 132018849 132019040 -30580890 + L2 LINE L2 2551 2754 -560 202 273 0 0 chrX 132019232 132019276 -30580654 + L2 LINE L2 3143 3186 -86 1379 152 0 22 chrX 132019281 132019512 -30580418 + MER46A DNA MER2_type 2 227 -9 2071 120 7 10 chrX 132021313 132021612 -30578318 - AluSx SINE Alu -14 298 1 23 92 0 0 chrX 132021688 132021753 -30578177 + AT_rich Low_complexity Low_complexity 1 65 0 180 0 0 0 chrX 132021782 132021802 -30578128 + (TTA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chrX 132022095 132022125 -30577805 + AT_rich Low_complexity Low_complexity 1 30 0 654 169 197 7 chrX 132024024 132024166 -30575764 - MER21B LTR ERV1 -362 501 333 242 196 65 0 chrX 132025060 132025106 -30574824 + L2 LINE L2 3220 3268 -4 2232 118 3 0 chrX 132025517 132025822 -30574108 - AluSx SINE Alu -6 306 1 24 32 0 0 chrX 132026072 132026103 -30573827 + AT_rich Low_complexity Low_complexity 1 31 0 317 165 35 94 chrX 132026734 132026819 -30573111 - L1MC4 LINE L1 -60 7982 7903 1683 223 114 32 chrX 132026936 132027523 -30572407 - L1MC4 LINE L1 -146 7896 7262 287 341 31 31 chrX 132028083 132028212 -30571718 + L3 LINE CR1 679 807 -770 2267 92 3 3 chrX 132028245 132028539 -30571391 - AluSq SINE Alu -18 295 2 230 176 39 0 chrX 132028540 132028591 -30571339 + L3 LINE CR1 795 847 -730 269 329 51 25 chrX 132028632 132028790 -30571140 + L3b LINE CR1 1308 1469 -114 31 44 0 0 chrX 132029529 132029574 -30570356 + AT_rich Low_complexity Low_complexity 1 45 0 1704 109 0 13 chrX 132031592 132031830 -30568100 - AluSx SINE Alu -77 235 1 1844 159 10 0 chrX 132032039 132032328 -30567602 - AluJo SINE Alu -20 292 1 208 354 0 0 chrX 132032332 132032397 -30567533 + L2 LINE L2 3231 3295 -18 2240 114 0 0 chrX 132032758 132033055 -30566875 - AluSc SINE Alu -10 299 3 1475 219 17 3 chrX 132033872 132034173 -30565757 + MER58B DNA MER1_type 37 341 0 831 307 64 62 chrX 132034254 132034658 -30565272 + L3 LINE CR1 1172 1576 -1 11917 111 25 3 chrX 132034808 132036581 -30563349 - Tigger1 DNA MER2_type 0 2418 608 9722 57 7 19 chrX 132036581 132037399 -30562531 - L1PA7 LINE L1 -3 6151 5325 1248 33 0 0 chrX 132037399 132037549 -30562381 + L1PA5 LINE L1 6005 6154 0 9722 57 7 19 chrX 132037549 132038841 -30561089 - L1PA7 LINE L1 -829 5325 4054 3500 159 49 0 chrX 132038841 132039437 -30560493 - Tigger1 DNA MER2_type -1793 625 1 404 256 30 42 chrX 132039549 132039717 -30560213 - MER103 DNA DNA 0 166 1 2636 53 0 0 chrX 132040193 132040495 -30559435 + AluY SINE Alu 1 302 -9 334 245 46 73 chrX 132041368 132041519 -30558411 - L1ME4a LINE L1 -24 6097 5951 621 232 95 87 chrX 132041566 132041732 -30558198 - L1ME4a LINE L1 -409 5712 5549 1623 161 26 104 chrX 132041732 132042155 -30557775 - MLT1B LTR MaLR 0 390 1 621 232 95 87 chrX 132042155 132042405 -30557525 - L1ME4a LINE L1 -572 5549 5314 21 0 0 0 chrX 132042504 132042525 -30557405 + AT_rich Low_complexity Low_complexity 1 21 0 571 253 6 6 chrX 132042817 132042975 -30556955 - MER103 DNA DNA -7 159 2 1601 189 53 13 chrX 132043011 132043204 -30556726 - L1MD2 LINE L1 -13 6346 6162 225 0 0 0 chrX 132043204 132043229 -30556701 + (TG)n Simple_repeat Simple_repeat 1 25 0 1601 189 53 13 chrX 132043229 132043580 -30556350 - L1MD2 LINE L1 -197 6162 5740 910 151 52 6 chrX 132044426 132044598 -30555332 - MER104 DNA MER2_type 0 180 1 501 244 113 75 chrX 132045916 132046235 -30553695 - MLT1I LTR MaLR 0 409 79 1681 275 46 4 chrX 132048704 132049158 -30550772 + LTR16C LTR ERVL 19 491 0 2408 35 0 3 chrX 132049443 132049749 -30550181 - AluY SINE Alu 0 305 1 1763 163 0 7 chrX 132050745 132051040 -30548890 - AluJb SINE Alu -19 293 1 255 136 51 34 chrX 132051134 132051193 -30548737 + (CCTAA)n Simple_repeat Simple_repeat 3 62 0 601 187 75 2 chrX 132053349 132053488 -30546442 - MLT1H LTR MaLR -2 547 435 266 211 11 44 chrX 132054171 132054261 -30545669 + (TTTA)n Simple_repeat Simple_repeat 2 88 0 755 132 88 176 chrX 132055488 132055548 -30544382 - MER5A DNA MER1_type -3 186 122 898 77 8 0 chrX 132055548 132055665 -30544265 + 5S rRNA rRNA 1 118 -3 755 132 88 176 chrX 132055665 132055808 -30544122 - MER5A DNA MER1_type -67 122 1 28 29 0 0 chrX 132056508 132056543 -30543387 + AT_rich Low_complexity Low_complexity 1 35 0 265 362 50 14 chrX 132057872 132058013 -30541917 + MIR SINE MIR 6 151 -111 185 272 136 10 chrX 132058141 132058244 -30541686 + MIR SINE MIR 147 262 0 279 339 97 8 chrX 132058368 132058492 -30541438 - L2 LINE L2 -4 3268 3134 479 281 158 18 chrX 132058516 132058687 -30541243 - MER91A DNA MER1_type -1 195 1 187 339 125 9 chrX 132058744 132058856 -30541074 - L2 LINE L2 -254 3018 2894 653 92 10 20 chrX 132058979 132059077 -30540853 + AluSg SINE Alu 35 131 -179 1587 126 4 31 chrX 132059084 132059345 -30540585 + AluSg SINE Alu 48 301 -9 326 283 46 26 chrX 132059721 132059873 -30540057 - HAL1b LINE L1 -7 1341 1187 475 115 23 0 chrX 132059897 132059934 -30539996 + (TA)n Simple_repeat Simple_repeat 2 37 -53 2164 119 0 0 chrX 132059934 132060220 -30539710 - AluSx SINE Alu -25 287 2 475 115 23 0 chrX 132060220 132060269 -30539661 + (TA)n Simple_repeat Simple_repeat 37 90 0 230 276 0 0 chrX 132060271 132060358 -30539572 - L1MC4 LINE L1 -1342 6700 6614 345 300 0 0 chrX 132060358 132060448 -30539482 - L1MC4 LINE L1 -1339 6703 6614 319 322 0 0 chrX 132060404 132060494 -30539436 + L1MC4 LINE L1 6614 6703 -1339 * 334 233 24 8 chrX 132060466 132060590 -30539340 - L1MC4 LINE L1 -1339 6983 1995 * 342 261 23 0 chrX 132060570 132060658 -30539272 - L1MC4 LINE L1 -1339 6703 6614 183 156 0 0 chrX 132060658 132060690 -30539240 + (CATA)n Simple_repeat Simple_repeat 2 33 0 341 300 0 0 chrX 132060690 132060780 -30539150 - L1MC4 LINE L1 -1339 6703 6614 306 297 0 22 chrX 132060718 132060792 -30539138 + L1MC4 LINE L1 6614 6687 -1355 * 1044 151 0 0 chrX 132060792 132060971 -30538959 + (TA)n Simple_repeat Simple_repeat 2 180 0 306 297 0 22 chrX 132060971 132060987 -30538943 + L1MC4 LINE L1 6687 6702 -1340 1279 86 0 17 chrX 132060987 132061162 -30538768 - AluY SINE Alu -24 287 116 738 229 33 16 chrX 132061163 132061407 -30538523 - HAL1b LINE L1 -239 1109 862 231 108 0 0 chrX 132061426 132061463 -30538467 - HAL1b LINE L1 -553 795 759 450 326 51 18 chrX 132061467 132061743 -30538187 - MLT1J LTR MaLR -3 508 224 495 312 5 15 chrX 132061857 132062062 -30537868 - HAL1b LINE L1 -589 759 557 3294 261 71 45 chrX 132062158 132063762 -30536168 - HAL1 LINE L1 -590 1917 74 8656 190 42 12 chrX 132063891 132065471 -30534459 + L1MA4A LINE L1 2 1629 -5220 14508 161 18 14 chrX 132065477 132066229 -30533701 + L1MA4A LINE L1 3259 4007 -2998 2030 111 0 14 chrX 132066229 132066509 -30533421 + AluSq SINE Alu 22 297 -16 14508 161 18 14 chrX 132066509 132068984 -30530946 + L1MA4A LINE L1 4007 6486 -519 20215 81 16 1 chrX 132068985 132072560 -30527370 + L1PA7 LINE L1 2555 6148 -6 202 54 27 27 chrX 132072563 132072600 -30527330 + (TA)n Simple_repeat Simple_repeat 2 38 0 2949 120 24 12 chrX 132072601 132073101 -30526829 + L1MA4A LINE L1 6495 7000 -5 357 324 9 0 chrX 132073353 132073461 -30526469 + MIR SINE MIR 98 206 -56 917 206 69 17 chrX 132074080 132074313 -30525617 - L1MB8 LINE L1 -6 6172 5928 475 185 9 22 chrX 132074323 132074550 -30525380 - L1MA7 LINE L1 -1 6290 5961 255 266 120 19 chrX 132074708 132074866 -30525064 - L1MB8 LINE L1 -294 5876 5703 645 287 127 28 chrX 132074907 132075070 -30524860 + MLT1J2 LTR MaLR 3 149 -301 381 43 0 0 chrX 132075070 132075117 -30524813 + (CTATG)n Simple_repeat Simple_repeat 4 50 0 225 94 0 0 chrX 132075120 132075152 -30524778 + (TCCTG)n Simple_repeat Simple_repeat 2 33 0 645 287 127 28 chrX 132075152 132075371 -30524559 + MLT1J2 LTR MaLR 150 427 -23 939 291 20 38 chrX 132075389 132075986 -30523944 - L1MB8 LINE L1 -761 5410 4821 257 209 0 0 chrX 132076014 132076057 -30523873 + MER58 DNA MER1_type 1 43 -172 396 306 9 0 chrX 132076449 132076557 -30523373 + MER81 DNA DNA 1 109 -5 687 150 0 0 chrX 132076677 132076790 -30523140 + MER58 DNA MER1_type 2308 2420 0 391 286 52 19 chrX 132076790 132077003 -30522927 - L1MB8 LINE L1 -1346 4800 4581 1398 283 82 29 chrX 132077031 132077901 -30522029 - L1MB8 LINE L1 -1709 4437 3522 2951 162 21 62 chrX 132077965 132078596 -30521334 - L1MB7 LINE L1 0 6184 5580 427 298 18 6 chrX 132079021 132079189 -30520741 - HAL1 LINE L1 -821 1686 1517 543 269 44 19 chrX 132080172 132080332 -30519598 - MIR3 SINE MIR -27 181 18 1920 191 59 11 chrX 132080382 132080826 -30519104 - MLT1C LTR MaLR 0 467 3 5888 188 23 27 chrX 132080827 132082993 -30516937 - L1MB8 LINE L1 -6 6172 4015 189 0 0 0 chrX 132083486 132083507 -30516423 + (T)n Simple_repeat Simple_repeat 1 21 0 18119 33 3 0 chrX 132083824 132086790 -30513140 - L1PA3 LINE L1 -4 6151 3180 2501 22 0 0 chrX 132086790 132087102 -30512828 + L1PA3 LINE L1 2884 3195 -2951 180 100 33 0 chrX 132088268 132088298 -30511632 - MIR3 SINE MIR -5 203 173 2243 104 10 3 chrX 132088466 132088765 -30511165 - AluSx SINE Alu -11 301 1 1879 268 15 108 chrX 132088857 132089286 -30510644 + L2 LINE L2 1899 2366 -948 2651 103 13 8 chrX 132089286 132089683 -30510247 + L1PA8 LINE L1 5767 6165 -7 7213 20 0 20 chrX 132089684 132090547 -30509383 + L1PA3 LINE L1 5310 6155 0 1879 268 15 108 chrX 132090547 132090573 -30509357 + L2 LINE L2 2366 2393 -921 6172 54 11 0 chrX 132090573 132091365 -30508565 + L1PA7 LINE L1 5352 6152 -2 1879 268 15 108 chrX 132091365 132091970 -30507960 + L2 LINE L2 2393 2863 -451 294 349 57 19 chrX 132092215 132092321 -30507609 + L2 LINE L2 3136 3245 -27 21 36 0 0 chrX 132092321 132092349 -30507581 + AT_rich Low_complexity Low_complexity 1 28 0 6437 127 25 14 chrX 132092370 132094394 -30505536 - L1MA7 LINE L1 -1 6494 4449 2156 109 36 0 chrX 132094666 132094995 -30504935 - L1PA16 LINE L1 -1 6165 5825 6420 235 36 61 chrX 132095006 132095910 -30504020 - L1MA7 LINE L1 -3220 3130 2205 2017 117 3 24 chrX 132095910 132096235 -30503695 - AluSx SINE Alu 0 319 1 6420 235 36 61 chrX 132096235 132098903 -30501027 - L1MA7 LINE L1 -4145 2205 1 33 43 0 0 chrX 132099226 132099273 -30500657 + AT_rich Low_complexity Low_complexity 1 47 0 32272 32 14 0 chrX 132099273 132103998 -30495932 - L1PA3 LINE L1 -2 6153 1365 1725 201 86 34 chrX 132105048 132105492 -30494438 - MLT1C LTR MaLR 0 467 1 1099 123 6 6 chrX 132105759 132105938 -30493992 + L1MB4 LINE L1 6002 6180 0 693 169 124 51 chrX 132106216 132106394 -30493536 - MIR SINE MIR -6 256 66 300 305 54 51 chrX 132106687 132106908 -30493022 - L1M4 LINE L1 -2590 3556 3337 2145 92 30 3 chrX 132106908 132107211 -30492719 - AluY SINE Alu 0 311 1 300 305 54 51 chrX 132107211 132107580 -30492350 - L1M4 LINE L1 -2809 3337 2964 474 248 0 0 chrX 132107607 132107732 -30492198 + (TA)n Simple_repeat Simple_repeat 2 126 0 322 281 21 10 chrX 132107741 132107837 -30492093 - L1MC4 LINE L1 -1339 6703 6607 240 283 0 22 chrX 132107867 132107959 -30491971 + L1MC4 LINE L1 6614 6703 -1339 229 244 98 0 chrX 132107891 132107973 -30491957 - L1MC4 LINE L1 -1339 6703 6614 * 239 279 47 0 chrX 132107999 132108085 -30491845 - L1MC4 LINE L1 -1339 6703 6614 * 265 261 0 11 chrX 132108045 132108133 -30491797 + L1MC4 LINE L1 6614 6700 -1342 * 2628 239 60 19 chrX 132108110 132108842 -30491088 - L1ME3A LINE L1 -24 6146 5385 1491 128 41 4 chrX 132108929 132109171 -30490759 - L1PA16 LINE L1 -1 6165 5915 7191 149 16 21 chrX 132109182 132110312 -30489618 - L1PA12 LINE L1 -1 6167 5032 2087 120 17 0 chrX 132110312 132110612 -30489318 - AluSx SINE Alu -7 305 1 7191 149 16 21 chrX 132110612 132111401 -30488529 - L1PA12 LINE L1 -1136 5032 4248 2454 87 3 0 chrX 132111401 132111713 -30488217 - AluSp SINE Alu 0 313 1 7191 149 16 21 chrX 132111713 132111907 -30488023 - L1PA12 LINE L1 -1920 4248 4054 2179 187 27 2 chrX 132111907 132112381 -30487549 - L1P LINE L1 -928 5218 4730 562 300 111 25 chrX 132112387 132113133 -30486797 - L1M4 LINE L1 -3254 3128 2333 592 243 73 123 chrX 132113457 132113771 -30486159 - HAL1 LINE L1 -800 1707 1379 279 54 0 0 chrX 132113771 132113808 -30486122 + (GA)n Simple_repeat Simple_repeat 1 37 0 592 243 73 123 chrX 132113808 132114346 -30485584 - HAL1 LINE L1 -1128 1379 863 705 166 77 33 chrX 132114790 132114971 -30484959 - MER53 DNA DNA 0 189 1 484 230 22 74 chrX 132115654 132115789 -30484141 + MIR SINE MIR 24 151 -111 4477 108 8 0 chrX 132115962 132116682 -30483248 - L1PA8A LINE L1 -794 5352 4627 * 5810 61 1 5 chrX 132116681 132117455 -30482475 + L1PA8A LINE L1 5360 6130 -1 300 281 0 12 chrX 132117515 132117597 -30482333 + MIR SINE MIR 182 262 0 693 220 67 107 chrX 132119811 132120156 -30479774 + MLT1H LTR MaLR 219 549 0 418 299 60 0 chrX 132120305 132120472 -30479458 - MER104 DNA Tc2 0 180 4 475 252 10 0 chrX 132120684 132120787 -30479143 + MIR SINE MIR 84 187 -75 449 263 28 84 chrX 132121741 132121895 -30478035 + MIR SINE MIR 6 146 -116 3577 48 21 0 chrX 132121895 132122330 -30477600 - MLT2A1 LTR ERVL 0 444 1 449 263 28 84 chrX 132122330 132122388 -30477542 + MIR SINE MIR 146 206 -56 305 321 57 78 chrX 132122424 132122567 -30477363 - L2 LINE L2 -9 3263 3118 1014 136 33 5 chrX 132122567 132122751 -30477179 - MER53 DNA DNA 0 189 1 305 321 57 78 chrX 132122751 132123100 -30476830 - L2 LINE L2 -154 3118 2796 297 0 0 0 chrX 132123191 132123224 -30476706 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chrX 132123223 132123248 -30476682 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1878 162 46 29 chrX 132123961 132124375 -30475555 - MER63B DNA MER1_type -4 432 12 549 236 91 18 chrX 132124438 132124603 -30475327 + MIR SINE MIR 5 181 -81 1849 232 77 25 chrX 132124615 132125137 -30474793 - MLT1H LTR MaLR 0 549 1 308 260 0 0 chrX 132125190 132125267 -30474663 + MER116 DNA Mariner 4 80 0 1925 177 45 52 chrX 132125281 132125705 -30474225 + MSTB LTR MaLR 1 421 -5 385 343 75 8 chrX 132125711 132125845 -30474085 - MER91A DNA MER1_type -52 144 2 2195 122 0 28 chrX 132125903 132126223 -30473707 - AluSx SINE Alu 0 312 2 5141 92 7 3 chrX 132126297 132126623 -30473307 - L1PB1 LINE L1 -1 6150 5827 576 0 0 0 chrX 132126623 132126687 -30473243 + (TA)n Simple_repeat Simple_repeat 2 65 0 5141 92 7 3 chrX 132126687 132127345 -30472585 - L1PB1 LINE L1 -324 5827 5104 1055 163 0 6 chrX 132127347 132127519 -30472411 + MLT1J LTR MaLR 62 232 -279 204 233 0 23 chrX 132129879 132129922 -30470008 + MIR SINE MIR 46 87 -175 975 265 5 0 chrX 132129930 132130149 -30469781 + MIR SINE MIR 40 259 -3 488 267 0 25 chrX 132131759 132131920 -30468010 - LTR55 LTR ERV -24 524 368 216 0 0 0 chrX 132132103 132132127 -30467803 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 237 292 0 15 chrX 132132167 132132232 -30467698 + L2 LINE L2 3207 3270 -2 252 0 0 0 chrX 132132505 132132533 -30467397 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1073 147 23 47 chrX 132132533 132132784 -30467146 - LTR8 LTR ERV1 -98 629 390 30 59 0 0 chrX 132133180 132133231 -30466699 + AT_rich Low_complexity Low_complexity 1 51 0 1928 187 133 0 chrX 132133240 132133652 -30466278 + MLT2B1 LTR ERVL 10 476 -44 534 57 0 0 chrX 132133655 132133725 -30466205 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 295 185 0 0 chrX 132133765 132133830 -30466100 + MLT2B1 LTR ERVL 456 520 0 1351 230 61 24 chrX 132133831 132134209 -30465721 + ERVL-B1 LTR ERVL 2 393 -5371 38187 48 2 1 chrX 132134231 132139988 -30459942 - L1PA5 LINE L1 -1 6153 391 15620 194 42 10 chrX 132139996 132143669 -30456261 - L1 LINE L1 -1650 5915 2007 1939 141 3 0 chrX 132143669 132143952 -30455978 - AluSq SINE Alu -17 296 13 15620 194 42 10 chrX 132143952 132145796 -30454134 - L1 LINE L1 -5558 2007 223 200 254 36 0 chrX 132145851 132145906 -30454024 - MIR SINE MIR -5 257 201 1057 141 45 0 chrX 132146257 132146434 -30453496 - L1PA10 LINE L1 -5 6163 5979 1840 108 50 4 chrX 132146434 132146706 -30453224 + L1PA11 LINE L1 5884 6174 0 4603 165 16 3 chrX 132146724 132148294 -30451636 - L1 LINE L1 -2936 4629 3010 969 116 8 0 chrX 132148295 132148424 -30451506 - AluSq/x SINE Alu -183 130 1 1852 158 0 33 chrX 132148447 132148750 -30451180 - AluSx SINE Alu -19 293 1 2199 73 6 12 chrX 132148750 132149078 -30450852 - L1M1 LINE L1 -4550 3015 2690 40226 40 23 1 chrX 132149132 132155140 -30444790 - L1PA3 LINE L1 0 6155 15 4196 130 11 3 chrX 132155141 132155887 -30444043 - L1M1 LINE L1 -4864 2701 1950 1778 119 109 16 chrX 132155887 132156190 -30443740 + THE1B LTR MaLR 1 331 -33 1472 65 0 0 chrX 132156207 132156406 -30443524 + THE1B-int LTR MaLR 2 200 -1380 * 2338 99 33 6 chrX 132156405 132156770 -30443160 - THE1C-int LTR MaLR -1205 375 1 2272 105 35 24 chrX 132156770 132157141 -30442789 - THE1C LTR MaLR 0 375 1 3987 199 32 31 chrX 132157141 132158081 -30441849 - L1M1 LINE L1 -6613 952 12 2706 194 2 2 chrX 132158082 132158668 -30441262 - L1 LINE L1 -1137 5009 4424 872 156 13 13 chrX 132158669 132158823 -30441107 + Tigger2 DNA MER2_type 2554 2707 -11 323 257 64 18 chrX 132158846 132158955 -30440975 + L1MEc LINE L1 1843 1956 -4440 1934 245 32 27 chrX 132158968 132159480 -30440450 + L1MEc LINE L1 1728 2236 -3979 1798 158 9 43 chrX 132159480 132159803 -30440127 + AluJb SINE Alu 1 312 0 1934 245 32 27 chrX 132159803 132160347 -30439583 + L1MEc LINE L1 2236 2745 -3470 330 273 12 50 chrX 132160761 132160922 -30439008 - L1MC5 LINE L1 -61 7900 7746 282 300 150 20 chrX 132160981 132161081 -30438849 + MIR SINE MIR 34 146 -62 416 192 240 41 chrX 132161098 132161244 -30438686 + MER5B DNA MER1_type 1 175 -3 1890 170 32 0 chrX 132161264 132161606 -30438324 + MLT2C1 LTR ERVL 3 355 -42 243 152 0 0 chrX 132161621 132161667 -30438263 + (TA)n Simple_repeat Simple_repeat 1 46 0 229 67 0 0 chrX 132161668 132161698 -30438232 + (TG)n Simple_repeat Simple_repeat 1 30 0 260 57 0 0 chrX 132161698 132161733 -30438197 + MLT2C1 LTR ERVL 363 397 0 199 284 40 14 chrX 132161854 132161928 -30438002 - MIR SINE MIR -13 249 174 342 246 236 0 chrX 132162355 132162465 -30437465 + MER5A DNA MER1_type 54 189 0 5757 32 4 3 chrX 132163428 132164114 -30435816 + L1PA5 LINE L1 5468 6154 0 270 152 0 0 chrX 132164128 132164174 -30435756 - L2 LINE L2 0 3313 3268 535 286 50 6 chrX 132164230 132164391 -30435539 + MIR SINE MIR 49 216 -46 343 315 69 15 chrX 132164509 132164639 -30435291 - L2 LINE L2 -35 3237 3101 213 299 102 86 chrX 132164698 132164942 -30434988 - L2 LINE L2 -6 3266 3019 307 115 0 0 chrX 132165190 132165242 -30434688 - L1MB2 LINE L1 0 6171 6120 1212 209 153 51 chrX 132165917 132166329 -30433601 + MLT2B1 LTR ERVL 1 454 -66 270 56 0 0 chrX 132166405 132166441 -30433489 + MLT2B1 LTR ERVL 475 510 -10 273 351 16 18 chrX 132166643 132166779 -30433151 + MIR SINE MIR 30 164 -62 537 292 82 43 chrX 132166971 132167204 -30432726 - MIR SINE MIR -3 259 18 187 313 62 21 chrX 132167418 132167514 -30432416 + MIR SINE MIR 11 110 -152 877 294 79 48 chrX 132167599 132168116 -30431814 + MLT1K LTR MaLR 56 588 0 1732 162 0 11 chrX 132168327 132168605 -30431325 + AluSx SINE Alu 33 307 -5 182 264 36 100 chrX 132169353 132169463 -30430467 + MIR3 SINE MIR 104 206 -2 228 345 50 0 chrX 132169725 132169844 -30430086 - L3 LINE CR1 -162 1415 1291 1067 133 26 96 chrX 132169870 132170140 -30429790 + L1MA9 LINE L1 5864 6114 -198 901 19 0 0 chrX 132170141 132170245 -30429685 + L1PA3 LINE L1 6049 6152 -3 996 120 74 0 chrX 132170261 132170436 -30429494 + L1MA9 LINE L1 6125 6312 0 716 325 55 11 chrX 132170442 132170713 -30429217 - L3 LINE CR1 -306 1271 989 258 254 169 0 chrX 132171746 132171817 -30428113 + MIR3 SINE MIR 105 187 -21 1741 201 27 39 chrX 132171968 132172407 -30427523 + LTR40b LTR ERVL 29 462 0 288 231 56 69 chrX 132172478 132172638 -30427292 + L2 LINE L2 3146 3303 -10 485 24 61 12 chrX 132173355 132173437 -30426493 + (TTTTC)n Simple_repeat Simple_repeat 3 88 0 311 264 0 46 chrX 132174068 132174155 -30425775 + L2 LINE L2 3184 3266 -6 273 231 9 19 chrX 132174355 132174463 -30425467 + CT-rich Low_complexity Low_complexity 1 107 0 624 230 89 40 chrX 132174999 132175247 -30424683 + MIR SINE MIR 2 261 -1 2091 182 35 31 chrX 132175970 132176427 -30423503 + MLT1D LTR MaLR 1 459 -46 2441 139 20 15 chrX 132178004 132178408 -30421522 + MSTB LTR MaLR 1 406 -20 456 352 125 24 chrX 132178883 132179285 -30420645 + L2 LINE L2 2643 3093 -220 290 323 23 39 chrX 132179926 132180056 -30419874 - MIR SINE MIR -124 138 11 931 194 0 24 chrX 132180070 132180111 -30419819 + MER5A DNA MER1_type 24 64 -125 3354 32 2 0 chrX 132180111 132180512 -30419418 + L1PA2 LINE L1 5754 6155 0 931 194 0 24 chrX 132180512 132180640 -30419290 + MER5A DNA MER1_type 64 189 0 246 315 0 41 chrX 132180711 132180784 -30419146 + L2 LINE L2 3244 3313 0 186 71 0 0 chrX 132181248 132181276 -30418654 + (TG)n Simple_repeat Simple_repeat 1 28 0 2352 117 0 0 chrX 132182267 132182575 -30417355 - AluSg SINE Alu -2 308 1 1697 164 3 49 chrX 132182699 132183003 -30416927 + AluJb SINE Alu 4 293 -19 440 322 101 25 chrX 132184855 132185141 -30414789 + L2 LINE L2 3005 3312 -1 321 266 25 25 chrX 132185271 132185429 -30414501 - L1M4 LINE L1 -2774 3372 3215 * 3011 215 97 3 chrX 132185393 132186334 -30413596 + L1ME3A LINE L1 5140 6166 -4 285 257 14 0 chrX 132186358 132186428 -30413502 + MIR3 SINE MIR 137 207 -1 252 319 65 100 chrX 132187843 132188103 -30411827 - L2 LINE L2 -6 3266 3016 2277 164 41 7 chrX 132188366 132188780 -30411150 - MSTA LTR MaLR 0 428 1 293 307 14 64 chrX 132188975 132189115 -30410815 - L2 LINE L2 -193 3079 2947 755 328 81 13 chrX 132189248 132189629 -30410301 - L2 LINE L2 -687 2627 2221 1034 266 113 26 chrX 132189998 132190536 -30409394 - L2 LINE L2 -1203 2111 1527 480 284 13 26 chrX 132190570 132190725 -30409205 - L2 LINE L2 -5 3308 3156 2421 230 41 7 chrX 132190991 132191755 -30408175 - L1M4 LINE L1 -1538 4608 3819 1388 207 123 44 chrX 132191758 132192125 -30407805 - MSTD LTR MaLR 0 396 1 549 151 28 0 chrX 132192125 132192231 -30407699 - MSTD-int LTR MaLR 0 1735 1627 6114 219 57 42 chrX 132192825 132193817 -30406113 - MSTD-int LTR MaLR -103 1632 607 1711 171 29 0 chrX 132193817 132194098 -30405832 - AluJo SINE Alu -23 289 1 6114 219 57 42 chrX 132194098 132194714 -30405216 - MSTD-int LTR MaLR -1128 607 1 1383 213 85 29 chrX 132194714 132195089 -30404841 - MSTD LTR MaLR 0 396 1 1539 256 43 31 chrX 132195089 132195618 -30404312 - L1M4 LINE L1 -2326 3820 3280 1526 192 21 17 chrX 132195618 132195905 -30404025 - AluJb SINE Alu -21 291 4 1539 256 43 31 chrX 132195905 132196051 -30403879 - L1M4 LINE L1 -2866 3280 3137 6228 97 25 26 chrX 132196064 132197221 -30402709 - L1MA2 LINE L1 -7 7716 6562 * 7972 173 23 59 chrX 132197219 132197842 -30402088 - L1MA2 LINE L1 -1986 5579 4935 1244 84 6 0 chrX 132197842 132198021 -30401909 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7972 173 23 59 chrX 132198021 132198106 -30401824 - L1MA2 LINE L1 -2630 4935 4848 24522 51 2 1 chrX 132198106 132202002 -30397928 - L1PA5 LINE L1 -4 6150 2250 7972 173 23 59 chrX 132202002 132203862 -30396068 - L1MA2 LINE L1 -2717 4848 3110 2050 179 52 42 chrX 132203869 132204293 -30395637 + MSTA LTR MaLR 1 428 0 338 244 17 35 chrX 132204317 132204432 -30395498 + L1MC4 LINE L1 7929 8041 -1 709 286 66 98 chrX 132204444 132205847 -30394083 - HAL1 LINE L1 -999 1508 150 2810 45 0 53 chrX 132205972 132206078 -30393852 - L1PA8 LINE L1 -13 6159 6049 2413 77 7 0 chrX 132206078 132206375 -30393555 - AluSc SINE Alu -10 299 1 2810 45 0 53 chrX 132206375 132206644 -30393286 - L1PA8 LINE L1 -123 6049 5804 410 229 203 8 chrX 132206676 132206794 -30393136 - MER5A DNA MER1_type -1 188 48 13334 200 22 22 chrX 132207128 132208825 -30391105 + L1PB1 LINE L1 189 1886 -4981 2334 102 0 13 chrX 132208825 132209139 -30390791 + AluY SINE Alu 1 310 -1 13334 200 22 22 chrX 132209139 132210877 -30389053 + L1PB1 LINE L1 1886 3624 -3243 369 0 0 0 chrX 132210877 132210918 -30389012 + (CA)n Simple_repeat Simple_repeat 2 42 0 13334 200 22 22 chrX 132210918 132211244 -30388686 + L1PB1 LINE L1 3624 3949 -2918 7120 27 1 0 chrX 132211244 132212082 -30387848 + L1PA4 LINE L1 5316 6154 -1 13334 200 22 22 chrX 132212082 132214508 -30385422 + L1PB1 LINE L1 3949 6640 -227 593 324 80 5 chrX 132214528 132214755 -30385175 - MIR SINE MIR -11 251 9 337 292 70 13 chrX 132216217 132216529 -30383401 + L1ME4a LINE L1 5635 5964 -157 716 293 19 5 chrX 132216540 132216748 -30383182 + MIR SINE MIR 15 225 -37 2657 154 16 57 chrX 132217180 132217682 -30382248 + L1M1 LINE L1 4828 5315 -871 2327 99 0 0 chrX 132217682 132217975 -30381955 + AluSg SINE Alu 1 293 -17 2657 154 16 57 chrX 132217975 132218097 -30381833 + L1M1 LINE L1 5315 5440 -746 12963 175 28 21 chrX 132218110 132221374 -30378556 + L1MA8 LINE L1 16 3254 -4311 2446 85 0 25 chrX 132221374 132221693 -30378237 + AluY SINE Alu 1 311 0 12963 175 28 21 chrX 132221693 132222821 -30377109 + L1MA8 LINE L1 3254 4372 -3193 2877 19 0 0 chrX 132222821 132223138 -30376792 + AluYb8 SINE Alu 1 317 -1 12963 175 28 21 chrX 132223138 132224111 -30375819 + L1MA8 LINE L1 4372 5792 -1773 2935 146 37 2 chrX 132224116 132224679 -30375251 - L1 LINE L1 -1070 5076 4494 1137 122 16 0 chrX 132224679 132224868 -30375062 + L1MA3 LINE L1 6114 6305 0 1015 153 0 0 chrX 132224871 132225041 -30374889 + L1MA8 LINE L1 6845 7014 -696 4005 129 22 1 chrX 132225120 132225794 -30374136 + L1MA8 LINE L1 7022 7709 -1 239 284 129 122 chrX 132226389 132226660 -30373270 - L2 LINE L2 -4 3268 2996 327 297 148 8 chrX 132226774 132226902 -30373028 - MIR3 SINE MIR -8 200 55 366 260 13 0 chrX 132226936 132227013 -30372917 - MIR SINE MIR -182 80 3 256 349 64 43 chrX 132227038 132227273 -30372657 - L2 LINE L2 -626 2688 2449 * 934 295 51 116 chrX 132227253 132227937 -30371993 + L3 LINE CR1 930 1569 -8 515 296 6 17 chrX 132228603 132228782 -30371148 + MER117 DNA MER1_type 1 177 -20 1308 148 0 0 chrX 132229779 132229988 -30369942 + MER3 DNA MER1_type 1 209 0 1361 200 69 42 chrX 132230485 132230820 -30369110 - MER2 DNA MER2_type 0 344 1 872 217 25 0 chrX 132231821 132232056 -30367874 + MER96B DNA MER1_type? 177 417 0 233 200 164 0 chrX 132232217 132232272 -30367658 - L2 LINE L2 -1 3312 3249 224 232 384 0 chrX 132232357 132232456 -30367474 - L2 LINE L2 -2 3311 3175 1853 250 63 5 chrX 132235484 132236052 -30363878 + L1MC4 LINE L1 7071 7671 -371 516 293 5 0 chrX 132236098 132236286 -30363644 + L1PB1 LINE L1 6 194 -6669 13979 191 25 5 chrX 132236286 132241965 -30357965 + L1PB1 LINE L1 903 6865 -2 583 246 59 9 chrX 132241989 132242209 -30357721 + L1MC4 LINE L1 7698 7928 -114 250 169 31 15 chrX 132242241 132242306 -30357624 + (TA)n Simple_repeat Simple_repeat 1 66 0 488 153 36 27 chrX 132242398 132242509 -30357421 + L1MC4 LINE L1 7925 8036 -6 572 228 35 0 chrX 132242752 132242866 -30357064 + MIR SINE MIR 12 129 -133 543 263 46 67 chrX 132242889 132243030 -30356900 + MIR3 SINE MIR 15 152 -56 621 256 35 17 chrX 132243030 132243202 -30356728 - MER5B DNA MER1_type -1 177 3 543 263 46 67 chrX 132243202 132243254 -30356676 + MIR3 SINE MIR 152 204 -4 41302 48 2 1 chrX 132245199 132251335 -30348595 - L1PA4 LINE L1 -3 6152 7 301 271 0 14 chrX 132253015 132253085 -30346845 - L3b LINE CR1 -3 1580 1512 999 280 155 30 chrX 132253149 132253711 -30346219 - L2 LINE L2 0 3313 2682 2131 141 74 50 chrX 132253711 132254129 -30345801 + MSTA LTR MaLR 1 428 0 999 280 155 30 chrX 132254129 132254208 -30345722 - L2 LINE L2 -631 2682 2614 302 235 22 18 chrX 132254257 132254368 -30345562 + MLT1I LTR MaLR 94 171 -238 665 257 92 14 chrX 132254594 132254812 -30345118 - L2 LINE L2 -737 2577 2343 2096 99 7 36 chrX 132254815 132255118 -30344812 - AluSq SINE Alu -19 294 1 387 276 43 35 chrX 132255524 132255640 -30344290 - MER5B DNA MER1_type -60 118 2 1910 184 0 0 chrX 132256942 132257246 -30342684 - AluJo SINE Alu -8 304 1 189 0 0 0 chrX 132257408 132257429 -30342501 + (TG)n Simple_repeat Simple_repeat 1 21 0 232 157 20 20 chrX 132258383 132258434 -30341496 + L2 LINE L2 3263 3313 0 261 83 0 0 chrX 132258956 132258992 -30340938 + (CA)n Simple_repeat Simple_repeat 2 37 0 34 24 0 0 chrX 132259765 132259806 -30340124 + AT_rich Low_complexity Low_complexity 1 41 0 822 201 0 0 chrX 132259862 132260001 -30339929 + FLAM_C SINE Alu 1 139 -4 1247 212 79 13 chrX 132260045 132260361 -30339569 - MER46C DNA MER2_type -1 337 1 276 53 0 0 chrX 132262031 132262069 -30337861 + (TGG)n Simple_repeat Simple_repeat 3 40 0 1288 159 131 4 chrX 132262069 132262321 -30337609 - AluJb SINE Alu -18 284 1 530 199 54 48 chrX 132262671 132262837 -30337093 - MIR SINE MIR -56 206 40 632 271 124 0 chrX 132263519 132263729 -30336201 + MIR SINE MIR 17 252 -10 1980 163 24 6 chrX 132263810 132264148 -30335782 + MER2 DNA MER2_type 1 344 0 1578 170 56 17 chrX 132265101 132265459 -30334471 - L1MCa LINE L1 -4772 1654 1283 * 2520 228 92 20 chrX 132265456 132266611 -30333319 - L1MDb LINE L1 -4436 1970 775 338 293 9 9 chrX 132267307 132267423 -30332507 - L1MDb LINE L1 -5939 457 342 214 351 0 26 chrX 132267702 132267779 -30332151 - MIR SINE MIR -186 76 2 306 329 35 41 chrX 132268731 132268901 -30331029 + MIR SINE MIR 13 181 -81 313 200 200 27 chrX 132269600 132269710 -30330220 - MIR SINE MIR -15 247 119 677 234 126 56 chrX 132269863 132270094 -30329836 + MIR SINE MIR 11 257 -5 257 346 20 0 chrX 132270185 132270286 -30329644 - MIR3 SINE MIR -9 199 97 208 316 0 0 chrX 132270346 132270403 -30329527 + MIR SINE MIR 87 143 -65 322 321 36 9 chrX 132271450 132271562 -30328368 - MIR3 SINE MIR -91 117 3 197 220 0 17 chrX 132271624 132271683 -30328247 + (TATG)n Simple_repeat Simple_repeat 3 60 0 278 197 0 28 chrX 132272316 132272387 -30327543 + (CACCT)n Simple_repeat Simple_repeat 2 70 0 221 239 0 0 chrX 132272523 132272569 -30327361 + GA-rich Low_complexity Low_complexity 1 46 0 1693 305 79 96 chrX 132273195 132274531 -30325399 + L3 LINE CR1 185 1497 -80 603 241 96 28 chrX 132274538 132274842 -30325088 - MLT1K LTR MaLR 0 588 224 2093 128 27 29 chrX 132275345 132275721 -30324209 + THE1C LTR MaLR 1 375 0 304 226 185 55 chrX 132276132 132276278 -30323652 - L2 LINE L2 0 3313 3149 980 233 47 42 chrX 132277138 132277589 -30322341 + L1MDb LINE L1 792 1244 -5165 186 276 41 90 chrX 132277594 132277674 -30322256 - L2 LINE L2 -218 3054 2983 1782 190 172 36 chrX 132277674 132278173 -30321757 - MLT1F1 LTR MaLR 0 567 1 186 276 41 90 chrX 132278173 132278237 -30321693 - L2 LINE L2 -289 2983 2917 661 264 36 0 chrX 132279821 132279988 -30319942 + MIR SINE MIR 50 222 -40 209 292 83 28 chrX 132280373 132280445 -30319485 + L2 LINE L2 3153 3228 -44 238 187 13 93 chrX 132280496 132280571 -30319359 + MER20 DNA MER1_type 36 104 -115 473 259 0 0 chrX 132280576 132280688 -30319242 + MIR SINE MIR 104 215 -47 416 116 0 0 chrX 132280838 132280907 -30319023 + L1P LINE L1 5329 5397 -769 13580 194 20 10 chrX 132280929 132285719 -30314211 + L1PB1 LINE L1 6 5144 -1723 261 0 0 0 chrX 132285719 132285748 -30314182 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 13580 194 20 10 chrX 132285748 132287490 -30312440 + L1PB1 LINE L1 5144 6867 0 22 56 0 0 chrX 132287506 132287542 -30312388 + AT_rich Low_complexity Low_complexity 1 36 0 392 202 0 84 chrX 132287570 132287689 -30312241 + MER20 DNA MER1_type 111 219 0 3120 176 2 5 chrX 132288306 132289202 -30310728 + L1P4 LINE L1 4880 5771 -395 588 305 41 39 chrX 132289331 132289370 -30310560 + L1MC4a LINE L1 5385 5422 -699 2066 117 0 7 chrX 132289370 132289695 -30310235 + AluSx SINE Alu 1 323 0 588 305 41 39 chrX 132289695 132289944 -30309986 + L1MC4a LINE L1 5422 5451 -670 1312 124 58 13 chrX 132289944 132290170 -30309760 + MER46A DNA MER2_type 1 236 0 588 305 41 39 chrX 132290170 132290421 -30309509 + L1MC4a LINE L1 5451 5700 -421 2303 84 3 0 chrX 132291889 132292175 -30307755 + AluSp SINE Alu 1 287 -26 31 26 0 0 chrX 132292178 132292216 -30307714 + AT_rich Low_complexity Low_complexity 1 38 0 4306 141 70 11 chrX 132292346 132293171 -30306759 - L1MB3 LINE L1 -30 6153 5280 1860 152 7 33 chrX 132294203 132294505 -30305425 + AluJb SINE Alu 1 294 -18 1555 252 84 44 chrX 132295723 132296271 -30303659 + MLT1E LTR MaLR 22 591 -2 2916 163 79 55 chrX 132296898 132297608 -30302322 + LTR8A LTR ERV1 1 727 0 2193 144 9 0 chrX 132298387 132298727 -30301203 - MER61A LTR ERV1 0 343 1 25 0 0 0 chrX 132299590 132299615 -30300315 + AT_rich Low_complexity Low_complexity 1 25 0 493 257 105 26 chrX 132300048 132300200 -30299730 - MIR SINE MIR -7 255 92 312 272 125 29 chrX 132300575 132300711 -30299219 + MIR SINE MIR 74 222 -40 1869 161 3 16 chrX 132300887 132301203 -30298727 - AluJo SINE Alu 0 312 1 1711 136 156 12 chrX 132301344 132301683 -30298247 + LTR48 LTR ERV1 1 388 -399 2497 193 50 57 chrX 132301684 132302471 -30297459 + LTR48B-int LTR ERV1 5388 6168 -163 579 124 71 26 chrX 132302571 132302684 -30297246 + LTR48B LTR ERV1 1 118 -526 * 1368 141 126 15 chrX 132302682 132303051 -30296879 + LTR48B LTR ERV1 352 644 0 208 308 0 65 chrX 132303315 132303422 -30296508 - MIR SINE MIR 0 262 163 552 304 72 26 chrX 132303427 132303555 -30296375 - MIR SINE MIR -14 248 107 4439 97 40 2 chrX 132303555 132304175 -30295755 + LTR9B LTR ERV1 1 644 0 552 304 72 26 chrX 132304175 132304240 -30295690 - MIR SINE MIR -155 107 46 581 232 139 41 chrX 132304359 132304553 -30295377 + L2 LINE L2 2417 2629 -685 457 222 11 119 chrX 132304568 132304744 -30295186 + MLT1J1 LTR MaLR 1 156 -290 1116 292 102 28 chrX 132304997 132305613 -30294317 + L2 LINE L2 2587 3273 -40 1146 127 0 0 chrX 132305615 132305773 -30294157 + AluSg/x SINE Alu 137 294 -18 322 106 0 0 chrX 132305773 132305820 -30294110 + L2 LINE L2 3265 3311 -2 416 285 42 62 chrX 132305853 132306046 -30293884 - MER5A DNA MER1_type 0 189 1 331 295 143 0 chrX 132306046 132306155 -30293775 + L2 LINE L2 3189 3313 0 500 253 169 0 chrX 132306321 132306475 -30293455 - MER5A DNA MER1_type 0 189 10 272 91 23 0 chrX 132307190 132307234 -30292696 + (TG)n Simple_repeat Simple_repeat 2 46 0 210 402 103 0 chrX 132307410 132307527 -30292403 + L2 LINE L2 3129 3257 -15 875 338 53 10 chrX 132308214 132308608 -30291322 - L3 LINE CR1 -113 1464 1054 3060 199 96 65 chrX 132309035 132309499 -30290431 - L1MC5 LINE L1 -36 7925 7477 553 72 10 10 chrX 132309499 132309596 -30290334 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 3060 199 96 65 chrX 132309596 132310385 -30289545 - L1MC5 LINE L1 -484 7477 6633 1125 166 16 10 chrX 132310393 132310586 -30289344 - AluJb SINE Alu -11 301 108 2203 125 0 0 chrX 132310591 132310896 -30289034 - AluSx SINE Alu -7 305 1 315 332 81 28 chrX 132311144 132311355 -30288575 - L1MC4a LINE L1 -1541 6267 6046 1510 264 85 25 chrX 132311403 132312013 -30287917 - L1ME3A LINE L1 -18 6152 5506 16450 162 17 12 chrX 132312139 132319824 -30280106 + L1MA2 LINE L1 10 7723 0 517 266 88 15 chrX 132319868 132320131 -30279799 - L1ME3A LINE L1 -1981 4165 3884 4486 169 41 11 chrX 132320189 132321131 -30278799 - L1MB7 LINE L1 -27 6157 5188 2808 222 9 1 chrX 132321163 132321816 -30278114 - L1MB7 LINE L1 -944 5202 4545 745 217 33 27 chrX 132322895 132323001 -30276929 - MER5A DNA MER1_type 0 189 85 3915 164 23 18 chrX 132323001 132323731 -30276199 - MER50 LTR ERV1 0 734 1 745 217 33 27 chrX 132323731 132323758 -30276172 - MER5A DNA MER1_type -104 85 60 7728 21 0 0 chrX 132323758 132325356 -30274574 - L1PA3 LINE L1 0 6155 4562 745 217 33 27 chrX 132325356 132325405 -30274525 - MER5A DNA MER1_type -129 60 5 214 267 0 0 chrX 132325496 132325541 -30274389 + (CATA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chrX 132325920 132325941 -30273989 + AT_rich Low_complexity Low_complexity 1 21 0 240 288 15 45 chrX 132326891 132326957 -30272973 - L2 LINE L2 -8 3305 3242 288 294 0 0 chrX 132328310 132328378 -30271552 - MER113 DNA MER1_type? -2 519 452 28 71 0 0 chrX 132328381 132328437 -30271493 + AT_rich Low_complexity Low_complexity 1 56 0 32 57 0 0 chrX 132328491 132328544 -30271386 + AT_rich Low_complexity Low_complexity 1 53 0 1871 144 74 9 chrX 132328563 132328902 -30271028 + MER46B DNA MER2_type 1 236 0 2529 104 16 16 chrX 132328925 132329300 -30270630 + THE1C LTR MaLR 1 375 0 2322 93 0 3 chrX 132330040 132330341 -30269589 + AluSq SINE Alu 1 300 -13 195 189 0 0 chrX 132331753 132331806 -30268124 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 6238 196 26 10 chrX 132331969 132333121 -30266809 + L1MB7 LINE L1 3964 5146 -1038 252 0 0 0 chrX 132333121 132333149 -30266781 + (GA)n Simple_repeat Simple_repeat 1 28 0 6238 196 26 10 chrX 132333149 132333593 -30266337 + L1MB7 LINE L1 5146 5581 -603 10313 32 1 0 chrX 132333593 132335589 -30264341 + L1PA4 LINE L1 4159 6155 0 2655 170 41 22 chrX 132335589 132336119 -30263811 + L1MB7 LINE L1 5585 6130 -54 2009 127 14 3 chrX 132336119 132336411 -30263519 + AluSx SINE Alu 1 295 -17 2655 170 41 22 chrX 132336411 132336466 -30263464 + L1MB7 LINE L1 6130 6182 -2 302 291 27 74 chrX 132336469 132336617 -30263313 + MIR SINE MIR 68 208 -54 187 74 74 130 chrX 132337115 132337169 -30262761 - MER5A DNA MER1_type -82 107 57 21 0 0 0 chrX 132337881 132337902 -30262028 + AT_rich Low_complexity Low_complexity 1 21 0 218 231 15 0 chrX 132337911 132337976 -30261954 + (TA)n Simple_repeat Simple_repeat 2 67 0 330 247 22 22 chrX 132337979 132338068 -30261862 + L1MC4 LINE L1 6615 6703 -1339 207 139 0 0 chrX 132338073 132338109 -30261821 + (TA)n Simple_repeat Simple_repeat 1 36 0 225 139 0 0 chrX 132338110 132338153 -30261777 - LTR66 LTR ERVL -173 437 395 * 239 133 0 0 chrX 132338119 132338164 -30261766 + LTR66 LTR ERVL 395 439 -171 198 304 11 76 chrX 132338389 132338481 -30261449 - L2 LINE L2 -3 3269 3184 634 192 8 0 chrX 132339033 132339153 -30260777 - MIR3 SINE MIR -5 203 83 2212 84 7 32 chrX 132339569 132339879 -30260051 + AluSx SINE Alu 1 302 -10 2394 81 0 0 chrX 132340112 132340407 -30259523 - AluSg SINE Alu -15 295 1 239 180 0 40 chrX 132340513 132340563 -30259367 - L3 LINE CR1 -6 1571 1524 346 250 16 24 chrX 132340629 132340753 -30259177 - MER103 DNA DNA 0 166 44 331 305 9 29 chrX 132340828 132340933 -30258997 - MIR3 SINE MIR -42 166 64 440 270 205 31 chrX 132341209 132341468 -30258462 + L2 LINE L2 2969 3272 0 277 268 31 41 chrX 132341875 132341972 -30257958 + MLT1H LTR MaLR 80 175 -374 2316 102 7 0 chrX 132342507 132342811 -30257119 - AluSx SINE Alu -6 306 1 1825 171 0 7 chrX 132343608 132343900 -30256030 + AluJo SINE Alu 1 290 -22 1385 165 153 11 chrX 132343920 132344181 -30255749 + AluJb SINE Alu 3 300 -2 206 159 14 43 chrX 132344436 132344505 -30255425 + (TTATA)n Simple_repeat Simple_repeat 2 68 0 971 295 81 16 chrX 132344508 132345246 -30254684 - L1ME3 LINE L1 -296 5866 5077 1037 226 25 37 chrX 132348425 132348738 -30251192 + L1ME2 LINE L1 5868 6334 0 263 264 155 47 chrX 132349049 132349197 -30250733 + L2 LINE L2 3104 3267 -5 329 297 39 16 chrX 132352437 132352565 -30247365 + L1ME4a LINE L1 4924 5054 -1092 528 283 74 18 chrX 132352784 132353068 -30246862 + L1ME4a LINE L1 5271 5570 -753 441 276 44 58 chrX 132353105 132353361 -30246569 + L1ME4a LINE L1 5627 5880 -241 1855 172 3 0 chrX 132353361 132353669 -30246261 + AluJo SINE Alu 3 311 -1 441 276 44 58 chrX 132353669 132353705 -30246225 + L1ME4a LINE L1 5880 5915 -206 2077 122 14 0 chrX 132353935 132354223 -30245707 + AluSx SINE Alu 1 292 -20 2258 97 0 10 chrX 132354304 132354613 -30245317 - AluSc SINE Alu -3 306 1 213 94 0 0 chrX 132354663 132354695 -30245235 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1562 206 27 20 chrX 132355364 132355722 -30244208 - MLT1D LTR MaLR 0 505 149 1055 239 54 34 chrX 132355706 132356096 -30243834 + MLT1D LTR MaLR 8 311 -79 * 666 296 90 9 chrX 132356169 132356402 -30243528 + MIR SINE MIR 2 253 -9 188 329 165 0 chrX 132356770 132356855 -30243075 - L2 LINE L2 -12 3301 3203 1057 169 23 0 chrX 132356891 132357063 -30242867 + MER2 DNA MER2_type 1 176 -169 526 256 0 15 chrX 132357162 132357295 -30242635 + L2 LINE L2 1748 1878 -1436 767 161 40 20 chrX 132357300 132357449 -30242481 + MER2 DNA MER2_type 169 320 -25 223 338 138 0 chrX 132357490 132357570 -30242360 - L2 LINE L2 -195 3077 2987 791 291 72 13 chrX 132358004 132358241 -30241689 - MIR SINE MIR 0 262 12 2247 102 3 0 chrX 132358462 132358756 -30241174 + AluSp SINE Alu 1 295 -18 745 200 93 47 chrX 132358814 132359029 -30240901 - MIR SINE MIR -2 260 36 3848 236 138 8 chrX 132359044 132360123 -30239807 + L2 LINE L2 1590 2808 -506 540 280 21 79 chrX 132360125 132360314 -30239616 + MER5B DNA MER1_type 1 178 0 1190 249 130 34 chrX 132360324 132360761 -30239169 + L2 LINE L2 2835 3313 0 803 213 40 5 chrX 132360948 132361150 -30238780 - Charlie4a DNA MER1_type -1 507 299 967 209 11 11 chrX 132361152 132361339 -30238591 - MER58A DNA MER1_type 0 224 38 1490 181 30 23 chrX 132361347 132361646 -30238284 - Charlie4a DNA MER1_type -207 301 1 529 317 21 11 chrX 132363053 132363239 -30236691 - MIR SINE MIR -5 257 70 359 336 82 37 chrX 132364264 132364398 -30235532 - L2 LINE L2 -10 3262 3123 2034 156 0 0 chrX 132364520 132364815 -30235115 - AluJo SINE Alu -17 295 1 753 135 63 16 chrX 132364868 132364994 -30234936 + FLAM_C SINE Alu 2 133 0 423 284 55 37 chrX 132365149 132365340 -30234590 - MIR SINE MIR -17 245 54 554 258 22 66 chrX 132366323 132366505 -30233425 + L2 LINE L2 3095 3268 -4 384 232 0 11 chrX 132366690 132366785 -30233145 - LTR33A LTR ERVL 0 523 430 182 346 0 0 chrX 132366868 132366920 -30233010 - L3 LINE CR1 -7 1570 1519 1047 271 28 69 chrX 132366933 132367439 -30232491 + MLT1J LTR MaLR 1 485 -26 616 340 84 15 chrX 132367462 132367797 -30232133 - L3 LINE CR1 -48 1529 1172 716 329 81 16 chrX 132368392 132368887 -30231043 + L2 LINE L2 1855 2381 -933 218 250 31 16 chrX 132368963 132369027 -30230903 - MIR SINE MIR -123 139 75 222 231 0 0 chrX 132369045 132369097 -30230833 + T-rich Low_complexity Low_complexity 1 52 0 184 333 0 18 chrX 132369127 132369184 -30230746 - MIR SINE MIR -200 62 7 1734 109 41 14 chrX 132371145 132371438 -30228492 - L1MA8 LINE L1 -4 6287 5987 355 342 71 54 chrX 132372005 132372245 -30227685 + L3 LINE CR1 993 1236 -341 199 274 16 32 chrX 132372558 132372620 -30227310 + L3 LINE CR1 1516 1576 -1 918 298 76 29 chrX 132376615 132377025 -30222905 - MLT1J2 LTR MaLR -21 429 1 2054 153 0 0 chrX 132377262 132377569 -30222361 + AluJb SINE Alu 1 307 -5 1225 179 44 16 chrX 132378578 132378830 -30221100 - MIR SINE MIR -2 260 2 1861 136 4 14 chrX 132379119 132379399 -30220531 - AluJb SINE Alu -30 282 6 1256 62 0 11 chrX 132379877 132380054 -30219876 - MER30 DNA MER1_type -55 175 1 457 273 43 56 chrX 132382259 132382281 -30217649 - MIR3 SINE MIR -45 163 142 389 155 12 60 chrX 132382281 132382365 -30217565 + MER116 DNA Mariner 1 80 0 457 273 43 56 chrX 132382365 132382503 -30217427 - MIR3 SINE MIR -66 142 5 297 0 0 0 chrX 132383544 132383577 -30216353 + (CA)n Simple_repeat Simple_repeat 1 33 0 2139 88 3 40 chrX 132384112 132384408 -30215522 + AluSc SINE Alu 1 285 -24 323 311 0 0 chrX 132384409 132384499 -30215431 - L1MC4 LINE L1 -1339 6703 6614 913 304 0 8 chrX 132384723 132384983 -30214947 + MIR SINE MIR 5 262 0 181 449 13 4 chrX 132385843 132386068 -30213862 - L2 LINE L2 -376 2938 2712 372 171 0 110 chrX 132386139 132386221 -30213709 + MER5A DNA MER1_type 26 98 -91 1374 149 14 0 chrX 132386222 132386437 -30213493 + MER1B DNA MER1_type 17 234 -63 1159 70 0 6 chrX 132386478 132386634 -30213296 + MER1B DNA MER1_type 175 329 0 1879 207 25 83 chrX 132386639 132387208 -30212722 - MLT1F LTR MaLR -6 536 1 220 182 26 117 chrX 132387214 132387291 -30212639 + MER5A DNA MER1_type 120 189 0 192 317 42 33 chrX 132387343 132387463 -30212467 - L2 LINE L2 -800 2514 2394 1024 231 103 8 chrX 132387937 132388171 -30211759 - MIR SINE MIR -5 257 2 1334 257 119 29 chrX 132388181 132388827 -30211103 - L1MC4 LINE L1 -1845 5963 5260 567 352 53 16 chrX 132388919 132389237 -30210693 - L1MC4 LINE L1 -1017 5129 4800 263 273 0 15 chrX 132389559 132389625 -30210305 + MIR SINE MIR 2 66 -196 711 231 53 34 chrX 132389833 132389897 -30210033 + MER58C DNA MER1_type 1 62 -2358 1993 146 0 7 chrX 132389897 132390198 -30209732 - AluJo SINE Alu -13 299 1 711 231 53 34 chrX 132390198 132390341 -30209589 + MER58C DNA MER1_type 62 212 -3 24 0 0 0 chrX 132390882 132390906 -30209024 + AT_rich Low_complexity Low_complexity 1 24 0 383 255 11 0 chrX 132390985 132391079 -30208851 - MIR SINE MIR -82 126 32 282 221 81 60 chrX 132394476 132394625 -30205305 + L2 LINE L2 3049 3200 -113 1327 167 0 14 chrX 132394628 132394838 -30205092 + AluJb SINE Alu 78 284 -28 313 170 220 20 chrX 132394854 132394954 -30204976 + L2 LINE L2 3193 3312 -1 2486 222 64 16 chrX 132395156 132395831 -30204099 + L1ME2 LINE L1 5434 6140 -24 216 0 0 0 chrX 132396110 132396134 -30203796 + (A)n Simple_repeat Simple_repeat 1 24 0 369 258 50 8 chrX 132396139 132396259 -30203671 + MIR SINE MIR 48 172 -90 278 356 39 96 chrX 132396456 132396737 -30203193 - L2 LINE L2 -84 3188 2924 434 306 5 99 chrX 132397219 132397441 -30202489 - L2 LINE L2 -1 3271 3071 279 374 8 8 chrX 132399821 132399952 -30199978 - L2 LINE L2 -8 3305 3175 328 218 8 19 chrX 132400362 132400499 -30199431 + MIR SINE MIR 71 262 0 262 240 0 0 chrX 132401338 132401388 -30198542 - L2 LINE L2 -22 3291 3242 217 239 68 45 chrX 132401479 132401567 -30198363 + L2 LINE L2 3175 3264 -8 2709 110 63 4 chrX 132402119 132402581 -30197349 - L1MA5A LINE L1 -114 6183 5695 * 7288 170 15 48 chrX 132402580 132403925 -30196005 - L1 LINE L1 -1744 5044 3770 2498 68 3 0 chrX 132403925 132404235 -30195695 - AluY SINE Alu 0 311 1 7288 170 15 48 chrX 132404235 132404652 -30195278 - L1 LINE L1 -3018 3770 3341 3481 224 54 27 chrX 132404650 132406066 -30193864 - L1 LINE L1 -5343 1446 1 * 865 127 16 5 chrX 132406067 132406303 -30193627 - LTR49 LTR ERV1 -87 508 227 7448 19 0 0 chrX 132406303 132407203 -30192727 - L1PA3 LINE L1 -2 6153 5254 3989 24 0 0 chrX 132407202 132407694 -30192236 + L1PA3 LINE L1 4756 5247 -899 * 1440 102 19 0 chrX 132407694 132407909 -30192021 - LTR49 LTR ERV1 -351 244 26 195 263 42 53 chrX 132407970 132408065 -30191865 + L2 LINE L2 2720 2813 -501 186 295 179 11 chrX 132408328 132408423 -30191507 - MIR SINE MIR -69 139 29 189 0 0 0 chrX 132409239 132409260 -30190670 + (TG)n Simple_repeat Simple_repeat 2 22 0 372 200 0 0 chrX 132409260 132409355 -30190575 + (TA)n Simple_repeat Simple_repeat 1 95 0 2074 125 99 10 chrX 132409366 132409751 -30190179 + LTR29 LTR ERV1 43 461 -161 1988 173 65 143 chrX 132409759 132410538 -30189392 + LTR8A LTR ERV1 9 727 0 666 151 0 0 chrX 132410538 132410641 -30189289 + LTR29 LTR ERV1 458 560 -62 244 264 0 0 chrX 132410646 132410699 -30189231 + (TA)n Simple_repeat Simple_repeat 1 53 0 320 277 77 23 chrX 132410813 132410943 -30188987 + MIR SINE MIR 71 207 -55 1014 236 25 4 chrX 132410999 132411236 -30188694 + MIR SINE MIR 2 243 -19 1876 186 22 3 chrX 132461290 132461613 -30138317 + MLT1A1 LTR MaLR 37 365 0 243 363 158 30 chrX 132462753 132463089 -30136841 + L2 LINE L2 2597 2975 -339 300 276 48 29 chrX 132463445 132463550 -30136380 - MLT1J2 LTR MaLR -342 108 2 471 260 169 0 chrX 132463645 132463799 -30136131 - MER5A DNA MER1_type -1 188 9 243 312 56 24 chrX 132463880 132464005 -30135925 + L2 LINE L2 3142 3270 -2 663 196 182 0 chrX 132465190 132465333 -30134597 - MER96 DNA MER1_type? -6 169 1 657 328 20 37 chrX 132466238 132466537 -30133393 - MER102b DNA MER1_type -15 326 33 195 167 0 0 chrX 132467333 132467375 -30132555 + CT-rich Low_complexity Low_complexity 1 42 0 1061 225 53 0 chrX 132467720 132467964 -30131966 + LTR65 LTR ERV1 391 647 -22 235 267 173 13 chrX 132468054 132468129 -30131801 + L2 LINE L2 3185 3271 -42 227 205 0 0 chrX 132468279 132468318 -30131612 - MLT1A1 LTR MaLR 0 365 327 18032 50 2 14 chrX 132468421 132470687 -30129243 - L1P LINE L1 -3786 2360 122 272 282 86 34 chrX 132470704 132470821 -30129109 - L2 LINE L2 -226 3046 2924 262 318 32 63 chrX 132471446 132471572 -30128358 - L2 LINE L2 -14 3258 3137 2245 87 0 16 chrX 132474166 132474475 -30125455 - AluY SINE Alu -7 304 1 771 105 0 0 chrX 132474526 132474621 -30125309 + AluSg/x SINE Alu 127 221 -89 541 293 194 4 chrX 132475252 132475494 -30124436 + L3 LINE CR1 1289 1576 -1 937 192 26 47 chrX 132477343 132477471 -30122459 + MER5A DNA MER1_type 1 125 -64 2145 99 23 3 chrX 132477471 132477775 -30122155 - AluSg SINE Alu 0 310 1 937 192 26 47 chrX 132477775 132477839 -30122091 + MER5A DNA MER1_type 125 189 0 1071 180 73 10 chrX 132477847 132478053 -30121877 - MER20 DNA MER1_type 0 219 1 6000 41 4 2 chrX 132480646 132481782 -30118148 - L1P2 LINE L1 -378 5776 4640 290 154 10 115 chrX 132481782 132481865 -30118065 - MER5A DNA MER1_type -114 75 4 21 0 0 0 chrX 132482245 132482266 -30117664 + AT_rich Low_complexity Low_complexity 1 21 0 338 219 8 126 chrX 132483265 132483384 -30116546 - L2 LINE L2 0 3272 3168 1639 248 65 32 chrX 132483550 132484025 -30115905 + LTR16C LTR ERVL 1 491 0 1151 117 0 0 chrX 132485143 132485306 -30114624 - L1M1 LINE L1 -603 5700 5538 993 253 23 23 chrX 132485997 132486258 -30113672 - MIR SINE MIR 0 262 2 1084 271 141 30 chrX 132486299 132486768 -30113162 - LTR33 LTR ERVL 0 521 1 2493 123 33 8 chrX 132487158 132487524 -30112406 - THE1C LTR MaLR 0 375 1 183 401 45 30 chrX 132487666 132488020 -30111910 + L2 LINE L2 2684 3041 -231 437 246 0 0 chrX 132488118 132488232 -30111698 + MIR SINE MIR 147 260 -2 343 309 26 13 chrX 132488288 132488440 -30111490 + L2 LINE L2 3154 3307 -6 531 279 0 48 chrX 132488514 132488679 -30111251 - MIR3 SINE MIR -3 205 49 525 206 41 0 chrX 132488696 132488793 -30111137 - L2 LINE L2 -12 3301 3201 4946 105 61 7 chrX 132488794 132489537 -30110393 - L1MA4A LINE L1 -6 6297 5515 1609 193 3 14 chrX 132489561 132489857 -30110073 + AluJb SINE Alu 1 293 -19 15609 186 30 15 chrX 132489857 132493663 -30106267 + L1M1 LINE L1 15 3956 -3049 248 0 31 0 chrX 132493663 132493695 -30106235 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 15609 186 30 15 chrX 132493695 132496279 -30103651 + L1M1 LINE L1 3956 6500 -505 367 139 0 0 chrX 132496279 132496346 -30103584 - THE1A LTR MaLR 0 355 305 483 310 35 25 chrX 132496486 132496689 -30103241 - MIR SINE MIR -37 225 21 259 269 90 85 chrX 132496716 132496917 -30103013 - L2 LINE L2 -5 3308 3107 3500 20 0 15 chrX 132496939 132497331 -30102599 - L1PA3 LINE L1 0 6155 5770 25034 28 0 0 chrX 132497424 132501004 -30098926 - L1PA2 LINE L1 0 6155 2578 2265 90 6 26 chrX 132501150 132501462 -30098468 + AluSg SINE Alu 1 306 -4 2506 83 0 3 chrX 132502680 132502992 -30096938 + AluSx SINE Alu 1 311 -1 507 165 12 0 chrX 132503418 132503503 -30096427 - AluJ/FLAM SINE Alu -224 88 3 3828 215 40 25 chrX 132503987 132504034 -30095896 + MER63C DNA MER1_type 5 50 -1010 2410 26 0 0 chrX 132504034 132504302 -30095628 + L1PA2 LINE L1 5888 6155 0 3828 215 40 25 chrX 132504302 132505162 -30094768 + MER63C DNA MER1_type 50 925 -5 3876 143 60 47 chrX 132505678 132506488 -30093442 - L1MC3 LINE L1 0 7785 6965 1459 224 0 4 chrX 132506490 132506771 -30093159 - MER82 DNA MER2_type -1 652 373 1688 133 93 17 chrX 132506771 132507071 -30092859 - L1MC3 LINE L1 -1207 6578 6256 364 226 69 82 chrX 132507439 132507553 -30092377 - MIR SINE MIR 0 262 149 2160 113 3 16 chrX 132507553 132507862 -30092068 - AluSx SINE Alu -7 305 1 364 226 69 82 chrX 132507862 132507906 -30092024 - MIR SINE MIR -113 149 106 868 181 0 0 chrX 132507969 132508102 -30091828 + FLAM_C SINE Alu 1 133 0 193 282 13 64 chrX 132508113 132508191 -30091739 - L2 LINE L2 -11 3261 3188 2216 162 115 0 chrX 132508283 132508665 -30091265 - MSTB LTR MaLR 0 426 1 753 239 29 63 chrX 132509316 132509554 -30090376 - MIR SINE MIR -21 241 12 189 266 138 43 chrX 132510849 132510943 -30088987 + L2 LINE L2 3165 3267 -46 1172 238 0 18 chrX 132511445 132511672 -30088258 - MER58A DNA MER1_type 0 224 2 922 250 9 19 chrX 132511958 132512170 -30087760 - MER63A DNA MER1_type 0 210 1 536 308 133 2 chrX 132513386 132513610 -30086320 - MIR SINE MIR 0 262 14 747 294 80 24 chrX 132514242 132514669 -30085261 - L2 LINE L2 -123 3190 2737 1991 111 33 69 chrX 132516852 132517241 -30082689 + THE1C LTR MaLR 1 375 0 7785 85 45 0 chrX 132517543 132518627 -30081303 - THE1B-int LTR MaLR -447 1133 1 2242 144 28 17 chrX 132518627 132518987 -30080943 - THE1B LTR MaLR 0 364 1 2881 138 26 4 chrX 132518987 132519479 -30080451 + L1MA4A LINE L1 5794 6296 -7 585 161 39 0 chrX 132519481 132519611 -30080319 - L1M1 LINE L1 -777 5526 5392 1072 170 0 0 chrX 132519611 132519776 -30080154 - AluJb SINE Alu -14 298 134 3475 105 15 0 chrX 132519777 132520299 -30079631 - L1PA13 LINE L1 -5 6158 5629 5887 101 19 36 chrX 132520405 132520579 -30079351 - L1MA2 LINE L1 0 6304 6129 2210 112 0 7 chrX 132520579 132520873 -30079057 - AluSx SINE Alu -20 292 1 5887 101 19 36 chrX 132520873 132521702 -30078228 - L1MA2 LINE L1 -175 6129 5318 2532 82 11 8 chrX 132521713 132522068 -30077862 - L1PB1 LINE L1 -5 6146 5791 411 21 0 0 chrX 132522068 132522116 -30077814 + (TG)n Simple_repeat Simple_repeat 2 49 0 361 239 0 22 chrX 132522116 132522208 -30077722 + L1MC4 LINE L1 6614 6703 -1339 212 100 25 0 chrX 132522209 132522249 -30077681 + (TA)n Simple_repeat Simple_repeat 1 41 0 262 164 12 0 chrX 132522253 132522314 -30077616 - L1P5 LINE L1 -359 5792 5728 350 264 23 0 chrX 132522315 132522402 -30077528 - L1MC4 LINE L1 -1340 6702 6614 314 260 0 62 chrX 132522326 132522422 -30077508 + L1MC4 LINE L1 6614 6703 -1339 * 22 80 0 0 chrX 132522643 132522693 -30077237 + AT_rich Low_complexity Low_complexity 1 50 0 194 116 23 0 chrX 132523514 132523557 -30076373 + (TA)n Simple_repeat Simple_repeat 1 44 0 2103 117 3 23 chrX 132523557 132523857 -30076073 - AluSx SINE Alu -18 294 1 434 238 11 10 chrX 132526119 132526244 -30073686 - L1MA10 LINE L1 -48 6275 5993 2027 207 26 8 chrX 132526264 132526766 -30073164 - L1M4 LINE L1 -3019 3127 2617 9583 73 1 1 chrX 132526775 132528834 -30071096 - L1PA7 LINE L1 -8 6146 4094 1382 84 11 0 chrX 132529045 132529236 -30070694 + L1PB1 LINE L1 5958 6150 -1 1577 243 149 36 chrX 132529396 132529416 -30070514 - MLT1E LTR MaLR -3 590 574 1630 200 141 46 chrX 132529416 132529877 -30070053 + MLT1D LTR MaLR 1 505 0 1577 243 149 36 chrX 132529877 132530386 -30069544 - MLT1E LTR MaLR -19 574 1 648 281 41 17 chrX 132530493 132530788 -30069142 + L1ME3A LINE L1 5661 5962 -208 * 3197 127 55 2 chrX 132530776 132531344 -30068586 - L1MA7 LINE L1 -439 5852 5255 917 160 20 140 chrX 132531353 132531451 -30068479 + L1MA7 LINE L1 5850 5958 -333 4293 157 46 2 chrX 132531451 132532259 -30067671 + L1MA4 LINE L1 5458 6300 0 917 160 20 140 chrX 132532259 132532453 -30067477 + L1MA7 LINE L1 5958 6107 -184 7332 156 20 11 chrX 132532453 132533808 -30066122 + L1PB3 LINE L1 3748 4744 -1556 210 37 0 0 chrX 132533808 132533835 -30066095 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7332 156 20 11 chrX 132533835 132534494 -30065436 + L1PB3 LINE L1 4744 5396 -904 200 35 35 0 chrX 132534494 132534523 -30065407 + (TA)n Simple_repeat Simple_repeat 1 30 0 7332 156 20 11 chrX 132534523 132534957 -30064973 + L1PB3 LINE L1 5396 5825 -475 1849 141 7 31 chrX 132534957 132535273 -30064657 - AluSx SINE Alu 0 309 1 7332 156 20 11 chrX 132535273 132535403 -30064527 + L1PB3 LINE L1 5825 6296 -4 701 250 67 9 chrX 132535423 132535647 -30064283 + L1ME3A LINE L1 5927 6163 -7 1156 177 21 7 chrX 132537962 132538274 -30061656 - MLT1A1 LTR MaLR 0 365 1 586 296 136 5 chrX 132539027 132539233 -30060697 - MIR SINE MIR -15 247 15 2296 83 7 0 chrX 132541461 132541749 -30058181 + AluSc SINE Alu 1 290 -19 308 102 0 0 chrX 132542342 132542391 -30057539 - L1MA9 LINE L1 -38 6274 6226 1844 113 10 17 chrX 132542397 132542688 -30057242 + MER7A DNA MER2_type 9 295 -51 794 185 158 55 chrX 132542710 132542797 -30057133 - L1MA9 LINE L1 -83 6229 6152 270 81 0 0 chrX 132542797 132542834 -30057096 + (TG)n Simple_repeat Simple_repeat 1 37 0 794 185 158 55 chrX 132542834 132543000 -30056930 - L1MA9 LINE L1 -160 6152 5950 228 182 0 0 chrX 132543282 132543326 -30056604 + (TATG)n Simple_repeat Simple_repeat 3 46 0 499 289 147 18 chrX 132543945 132544163 -30055767 - MIR SINE MIR -10 252 7 331 229 0 0 chrX 132545577 132545638 -30054292 - MER5A DNA MER1_type -18 171 111 327 265 44 36 chrX 132545582 132545768 -30054162 + MER5A DNA MER1_type 25 188 -1 * 189 0 0 0 chrX 132545809 132545830 -30054100 + (T)n Simple_repeat Simple_repeat 1 21 0 418 314 89 18 chrX 132546212 132546381 -30053549 + MER5A DNA MER1_type 2 182 -7 762 201 45 6 chrX 132547162 132547341 -30052589 - MLT1A2 LTR MaLR 0 374 189 478 266 4 26 chrX 132547374 132547617 -30052313 + GA-rich Low_complexity Low_complexity 1 237 0 539 258 74 0 chrX 132547639 132547802 -30052128 - MLT1A2 LTR MaLR -215 175 1 414 230 170 37 chrX 132547802 132547937 -30051993 + MER5A DNA MER1_type 37 189 0 611 167 0 0 chrX 132548158 132548260 -30051670 - MLT1A1 LTR MaLR -263 102 1 434 372 51 5 chrX 132548261 132548457 -30051473 + MIR SINE MIR 58 262 0 267 360 15 44 chrX 132548553 132548689 -30051241 + L2 LINE L2 3132 3263 -9 2122 122 0 13 chrX 132548817 132549129 -30050801 - AluSx SINE Alu 0 312 5 486 0 0 0 chrX 132549566 132549620 -30050310 + (CA)n Simple_repeat Simple_repeat 2 55 0 330 18 246 0 chrX 132549822 132549879 -30050051 + MER63A DNA MER1_type 3 73 0 188 163 23 0 chrX 132549893 132549936 -30049994 + CT-rich Low_complexity Low_complexity 1 44 0 3314 138 20 2 chrX 132550209 132550811 -30049119 + L1 LINE L1 4124 4736 -1410 * 6271 130 33 3 chrX 132550809 132551887 -30048043 - L1MC1 LINE L1 -6 6327 5219 21 0 0 0 chrX 132551891 132551912 -30048018 + AT_rich Low_complexity Low_complexity 1 21 0 4847 137 6 53 chrX 132553033 132553911 -30046019 - L1MB1 LINE L1 0 6168 5337 2285 96 17 0 chrX 132553911 132554213 -30045717 - AluSx SINE Alu -5 307 1 4847 137 6 53 chrX 132554213 132554292 -30045638 - L1MB1 LINE L1 -831 5337 5256 507 246 0 56 chrX 132554292 132554434 -30045496 + MER63A DNA MER1_type 77 210 0 1389 237 91 32 chrX 132554783 132555247 -30044683 - MLT2B1 LTR ERVL -29 491 1 556 266 87 53 chrX 132557577 132557624 -30042306 + MIR SINE MIR 49 93 -169 1917 112 47 59 chrX 132557624 132557963 -30041967 + MER1B DNA MER1_type 3 337 0 556 266 87 53 chrX 132557963 132558122 -30041808 + MIR SINE MIR 93 262 0 270 172 11 35 chrX 132558316 132558403 -30041527 + CT-rich Low_complexity Low_complexity 4 88 0 307 283 117 0 chrX 132559105 132559225 -30040705 - L2 LINE L2 0 3313 3180 225 277 11 75 chrX 132559297 132559391 -30040539 + L3 LINE CR1 1239 1326 -251 623 238 81 43 chrX 132559424 132559472 -30040458 - MIR SINE MIR -44 218 173 1458 212 36 41 chrX 132559472 132559864 -30040066 - MLT1B LTR MaLR 0 390 1 623 238 81 43 chrX 132559864 132560025 -30039905 - MIR SINE MIR -89 173 1 225 279 173 39 chrX 132560126 132560230 -30039700 + L3 LINE CR1 1427 1544 -33 877 206 36 109 chrX 132560310 132560586 -30039344 - MIR SINE MIR 0 262 7 286 274 36 0 chrX 132561597 132561681 -30038249 + MIR SINE MIR 120 206 -56 212 243 29 126 chrX 132563322 132563425 -30036505 - MIR SINE MIR -169 93 1 450 0 0 0 chrX 132563921 132563971 -30035959 + (TG)n Simple_repeat Simple_repeat 1 50 0 243 152 0 0 chrX 132565066 132565112 -30034818 + (CAT)n Simple_repeat Simple_repeat 2 47 0 1407 179 77 36 chrX 132565386 132565750 -30034180 + MSTD LTR MaLR 1 379 -17 283 22 0 43 chrX 132565751 132565797 -30034133 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 542 29 0 0 chrX 132567778 132567847 -30032083 + L1PA5 LINE L1 6085 6153 -1 718 223 59 23 chrX 132568038 132568258 -30031672 - L1ME1 LINE L1 -5 6230 6003 443 169 0 0 chrX 132568405 132568488 -30031442 - L1MA9 LINE L1 -9 6303 6221 4454 144 53 19 chrX 132568490 132568848 -30031082 - L1MA9 LINE L1 -136 6176 5831 282 29 0 0 chrX 132568848 132568883 -30031047 + (CA)n Simple_repeat Simple_repeat 2 36 0 4454 144 53 19 chrX 132568883 132569396 -30030534 - L1MA9 LINE L1 -481 5831 5276 326 228 38 0 chrX 132569407 132569486 -30030444 - L1ME1 LINE L1 -262 5971 5890 * 3816 234 71 22 chrX 132569476 132570905 -30029025 - L1ME1 LINE L1 -2124 4091 2592 389 225 18 0 chrX 132570904 132571015 -30028915 - L1ME1 LINE L1 -6198 198 86 * 529 224 127 0 chrX 132571005 132571170 -30028760 - L1M4 LINE L1 -3438 2708 2523 * 633 241 6 13 chrX 132571169 132571327 -30028603 - L1ME1 LINE L1 -6203 193 37 566 310 36 115 chrX 132571335 132572457 -30027473 + L2 LINE L2 1824 2856 -458 2089 152 131 16 chrX 132572546 132572927 -30027003 + MSTA LTR MaLR 1 425 -3 4779 176 102 2 chrX 132572928 132573889 -30026041 + MSTA-int LTR MaLR 595 1651 0 2089 133 147 5 chrX 132573889 132574264 -30025666 + MSTA LTR MaLR 1 428 0 325 346 8 54 chrX 132574350 132574480 -30025450 + L2 LINE L2 3116 3239 -33 291 363 42 28 chrX 132574611 132574826 -30025104 - L2 LINE L2 -189 3083 2866 477 252 79 8 chrX 132575404 132575531 -30024399 + MIR3 SINE MIR 9 144 -64 412 322 126 54 chrX 132575793 132576458 -30023472 + L2 LINE L2 2135 2847 -467 185 305 63 53 chrX 132576495 132576590 -30023340 + L2 LINE L2 2916 3011 -261 222 118 0 0 chrX 132577236 132577270 -30022660 + (TC)n Simple_repeat Simple_repeat 1 34 0 363 96 0 0 chrX 132577614 132577666 -30022264 + (TG)n Simple_repeat Simple_repeat 2 53 0 1374 131 62 39 chrX 132577671 132577931 -30021999 + THE1B LTR MaLR 1 266 -98 4089 100 13 1 chrX 132577932 132578835 -30021095 + THE1B-int LTR MaLR 566 1580 0 2037 148 58 3 chrX 132578835 132579180 -30020750 + THE1B LTR MaLR 1 364 0 361 296 96 27 chrX 132579268 132579673 -30020257 + L1M4 LINE L1 4112 4544 -1602 418 316 14 5 chrX 132579813 132580022 -30019908 + L1M4 LINE L1 4730 4940 -1206 419 250 46 9 chrX 132580626 132580734 -30019196 + L2 LINE L2 3196 3307 -6 276 188 0 0 chrX 132581994 132582058 -30017872 + (TTCA)n Simple_repeat Simple_repeat 1 64 0 543 330 95 38 chrX 132582090 132582665 -30017265 - L2 LINE L2 -93 3179 2577 264 290 0 0 chrX 132583485 132583547 -30016383 - MIR3 SINE MIR -3 205 144 483 276 94 13 chrX 132583558 132583766 -30016164 + MIR SINE MIR 38 256 -6 255 289 165 0 chrX 132583823 132583920 -30016010 - MIR SINE MIR -78 130 18 1931 70 0 0 chrX 132584950 132585206 -30014724 - L1P LINE L1 -1956 4190 3935 2550 59 6 0 chrX 132585207 132585528 -30014402 + L1PA7 LINE L1 5829 6151 -3 209 272 62 37 chrX 132586565 132586646 -30013284 - MER5A DNA MER1_type -79 110 28 18850 28 0 0 chrX 132587185 132590228 -30009702 + L1PA3 LINE L1 3086 6150 -5 363 245 235 0 chrX 132591099 132591197 -30008733 - MER5A DNA MER1_type -7 182 62 335 380 54 35 chrX 132591321 132591726 -30008204 - L2 LINE L2 -354 2960 2548 23 0 0 0 chrX 132593104 132593127 -30006803 + AT_rich Low_complexity Low_complexity 1 23 0 327 305 13 53 chrX 132593135 132593286 -30006644 + MIR SINE MIR 21 165 -97 745 254 96 0 chrX 132595300 132595497 -30004433 - MIR SINE MIR 0 262 47 246 179 0 0 chrX 132595530 132595586 -30004344 + L1MC4 LINE L1 6648 6703 -1339 345 263 0 0 chrX 132595592 132595691 -30004239 + (TA)n Simple_repeat Simple_repeat 1 99 0 243 152 0 0 chrX 132595694 132595740 -30004190 - L1MC4 LINE L1 -1339 6703 6658 242 210 32 0 chrX 132595772 132595834 -30004096 - L1MC4 LINE L1 -1339 6703 6640 201 195 0 0 chrX 132595834 132595875 -30004055 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 296 23 0 chrX 132595882 132595970 -30003960 - L1MC4 LINE L1 -1339 6703 6614 * 325 276 23 0 chrX 132595916 132596003 -30003927 + L1MC4 LINE L1 6614 6702 -1340 * 358 253 23 0 chrX 132595974 132596061 -30003869 - L1MC4 LINE L1 -1339 6703 6615 312 303 11 0 chrX 132595986 132596075 -30003855 + L1MC4 LINE L1 6614 6703 -1339 * 186 43 0 0 chrX 132596086 132596109 -30003821 + (TA)n Simple_repeat Simple_repeat 2 24 0 2195 125 0 0 chrX 132596109 132596397 -30003533 - AluSx SINE Alu -24 288 1 1582 173 30 37 chrX 132596892 132597297 -30002633 - L1MB8 LINE L1 0 6178 5777 1917 228 75 16 chrX 132597299 132597940 -30001990 - L1MB8 LINE L1 -953 5193 4515 1813 157 13 30 chrX 132597982 132598282 -30001648 + AluJo SINE Alu 1 295 -17 2238 173 33 42 chrX 132598343 132598886 -30001044 - L1MA8 LINE L1 -6 6285 5748 28 29 0 0 chrX 132598965 132599000 -30000930 + AT_rich Low_complexity Low_complexity 1 35 0 265 351 0 0 chrX 132599280 132599392 -30000538 - MIR SINE MIR -72 136 42 441 167 21 31 chrX 132599400 132599496 -30000434 - MLT1J1 LTR MaLR -336 110 16 459 289 59 32 chrX 132599653 132599840 -30000090 - MIR SINE MIR -37 225 34 255 315 67 82 chrX 132599898 132600165 -29999765 - L2 LINE L2 -206 3066 2804 252 0 0 0 chrX 132601398 132601426 -29998504 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 450 36 0 0 chrX 132601425 132601481 -29998449 + (GA)n Simple_repeat Simple_repeat 1 56 0 2302 102 51 23 chrX 132601798 132602152 -29997778 - THE1B LTR MaLR 0 364 1 225 266 149 0 chrX 132602605 132602699 -29997231 + L2 LINE L2 2650 2757 -557 363 337 108 39 chrX 132603889 132604282 -29995648 - L2 LINE L2 -183 3089 2664 * 446 333 148 36 chrX 132604261 132604652 -29995278 - L2 LINE L2 -6 3266 2832 2325 75 4 0 chrX 132604697 132604978 -29994952 - AluSp SINE Alu -27 286 5 497 356 60 13 chrX 132605003 132605301 -29994629 - L2 LINE L2 -615 2699 2388 21 0 0 0 chrX 132605409 132605430 -29994500 + AT_rich Low_complexity Low_complexity 1 21 0 515 217 106 29 chrX 132605576 132605795 -29994135 - L1MC4a LINE L1 -167 5954 5715 373 357 26 55 chrX 132605795 132606078 -29993852 - L2 LINE L2 -2 3311 2954 6072 50 0 5 chrX 132606095 132606850 -29993080 + L1PA7 LINE L1 5402 6152 -2 1532 144 70 91 chrX 132606973 132607356 -29992574 + THE1C LTR MaLR 1 375 0 24 0 0 0 chrX 132607941 132607965 -29991965 + AT_rich Low_complexity Low_complexity 1 24 0 836 239 75 25 chrX 132608077 132608449 -29991481 - L1MC4a LINE L1 -590 5584 5201 393 363 125 10 chrX 132608507 132608906 -29991024 - L1MC4a LINE L1 -1039 5107 4663 * 422 290 134 29 chrX 132608896 132609172 -29990758 - L1MC4a LINE L1 -3549 2597 2293 499 287 0 57 chrX 132609763 132609920 -29990010 - MER5B DNA MER1_type -30 148 1 26 64 0 0 chrX 132610590 132610637 -29989293 + AT_rich Low_complexity Low_complexity 1 47 0 2264 121 0 0 chrX 132610890 132611196 -29988734 + AluSx SINE Alu 1 306 -6 704 324 56 11 chrX 132611548 132611832 -29988098 - L2 LINE L2 -2 3311 3015 360 280 15 0 chrX 132611924 132612056 -29987874 - MER103 DNA DNA -19 147 14 671 263 6 17 chrX 132612966 132613141 -29986789 - MER5A DNA MER1_type -1 188 16 3002 50 5 0 chrX 132614129 132614509 -29985421 - L1PA5 LINE L1 -3 6151 5770 4437 16 0 0 chrX 132614517 132615026 -29984904 - L1PA2 LINE L1 -2 6153 5645 290 28 0 0 chrX 132615026 132615062 -29984868 + L1PA2 LINE L1 5594 5629 -526 * 7430 23 3 0 chrX 132615057 132616366 -29983564 - L1PA5 LINE L1 -372 5783 4470 30 0 0 0 chrX 132617131 132617161 -29982769 + AT_rich Low_complexity Low_complexity 1 30 0 1153 307 40 2 chrX 132617977 132618381 -29981549 + LTR16A LTR ERVL 27 445 -5 1071 181 105 0 chrX 132618385 132618633 -29981297 + ORSL DNA AcHobo 1 274 -1 904 266 48 4 chrX 132619521 132619750 -29980180 + MIR SINE MIR 19 257 -5 784 326 128 37 chrX 132620876 132621686 -29978244 + L2 LINE L2 1961 2844 -470 2209 83 3 46 chrX 132621847 132622171 -29977759 - AluSq SINE Alu -3 310 1 453 350 7 7 chrX 132622298 132622441 -29977489 + L2 LINE L2 3115 3257 -15 967 272 11 26 chrX 132622578 132622843 -29977087 + MIR SINE MIR 2 262 0 21 36 0 0 chrX 132622844 132622872 -29977058 + AT_rich Low_complexity Low_complexity 1 28 0 235 290 0 0 chrX 132622937 132622999 -29976931 + MIR SINE MIR 198 259 -3 328 258 89 57 chrX 132623949 132624073 -29975857 - L2 LINE L2 -8 3305 3178 1101 80 11 6 chrX 132624526 132624702 -29975228 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 213 159 0 23 chrX 132624704 132624748 -29975182 + CT-rich Low_complexity Low_complexity 3 45 0 1586 222 44 21 chrX 132624922 132625309 -29974621 + MSTD LTR MaLR 1 396 0 216 255 0 0 chrX 132626704 132626755 -29973175 + MIR SINE MIR 109 159 -103 247 291 23 23 chrX 132626803 132626889 -29973041 - MIR SINE MIR -60 148 63 997 252 50 16 chrX 132627159 132627211 -29972719 + MER46C DNA MER2_type 2 51 -287 303 28 0 0 chrX 132627211 132627247 -29972683 + (TC)n Simple_repeat Simple_repeat 2 37 0 997 252 50 16 chrX 132627247 132627515 -29972415 + MER46C DNA MER2_type 51 333 -5 279 281 0 0 chrX 132627516 132627580 -29972350 - L2 LINE L2 -10 3303 3240 195 277 0 21 chrX 132627719 132627766 -29972164 - L2 LINE L2 -89 3183 3138 283 289 133 0 chrX 132628993 132629083 -29970847 - MIR SINE MIR -1 261 160 2355 106 0 0 chrX 132629179 132629480 -29970450 - AluSx SINE Alu -11 301 1 220 304 0 14 chrX 132630111 132630180 -29969750 + CT-rich Low_complexity Low_complexity 1 68 0 416 286 35 35 chrX 132630769 132630940 -29968990 - MIR3 SINE MIR -5 203 33 365 255 98 0 chrX 132631627 132631729 -29968201 - MIR SINE MIR -63 145 34 464 236 57 8 chrX 132631861 132631984 -29967946 + MIR SINE MIR 39 167 -95 1023 205 100 0 chrX 132632141 132632390 -29967540 + ORSL DNA AcHobo 2 275 0 364 346 72 51 chrX 132632402 132632734 -29967196 + L1MEd LINE L1 44 382 -5737 189 0 0 0 chrX 132632841 132632862 -29967068 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 266 298 19 19 chrX 132632945 132633103 -29966827 + L1MEd LINE L1 538 695 -5332 412 70 0 0 chrX 132633892 132633949 -29965981 - L1PA5 LINE L1 -1 6153 6097 209 309 0 29 chrX 132634784 132634852 -29965078 + L2 LINE L2 3206 3271 -1 279 313 10 30 chrX 132635210 132635309 -29964621 - L2 LINE L2 -181 3091 2995 766 242 121 19 chrX 132635328 132635592 -29964338 + L2 LINE L2 3021 3311 -2 296 343 72 12 chrX 132635590 132635756 -29964174 - L2 LINE L2 -342 2972 2797 * 1386 41 0 0 chrX 132636039 132636210 -29963720 - L1P2 LINE L1 -429 5725 5555 473 48 0 0 chrX 132636210 132636272 -29963658 + L1PA6 LINE L1 6089 6150 -4 517 260 57 70 chrX 132636283 132636510 -29963420 - MIR SINE MIR -36 226 3 858 241 25 25 chrX 132636975 132637216 -29962714 - MIR SINE MIR -7 255 15 1471 133 129 0 chrX 132637258 132637513 -29962417 + Ricksha DNA DNA 1 288 -2958 8278 117 21 31 chrX 132637514 132638939 -29960991 + Ricksha DNA DNA 1823 3233 -13 254 336 25 0 chrX 132640204 132640326 -29959604 - L2 LINE L2 -1314 2000 1876 295 366 74 42 chrX 132640814 132641368 -29958562 - L2 LINE L2 -2542 772 201 198 71 0 0 chrX 132643477 132643505 -29956425 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5973 26 25 12 chrX 132643508 132644276 -29955654 - L1PA4 LINE L1 0 6155 5378 314 320 120 11 chrX 132644280 132644455 -29955475 - L2 LINE L2 0 3313 3120 853 316 145 17 chrX 132644465 132644823 -29955107 - L2 LINE L2 0 3272 2869 809 257 9 36 chrX 132644913 132645135 -29954795 + MIR SINE MIR 32 247 -15 2062 215 61 42 chrX 132646120 132646664 -29953266 + MLT2B3 LTR ERVL 1 554 0 1746 150 30 82 chrX 132649505 132649872 -29950058 - MER7A DNA MER2_type 0 346 1 202 311 56 56 chrX 132650097 132650187 -29949743 - L2 LINE L2 -44 3228 3139 681 321 100 42 chrX 132650302 132650760 -29949170 - L2 LINE L2 -340 2974 2490 1860 243 99 92 chrX 132650767 132651729 -29948201 - L2 LINE L2 0 3313 2346 298 290 11 0 chrX 132651729 132651822 -29948108 - L2 LINE L2 -826 2488 2395 212 270 0 32 chrX 132651829 132651892 -29948038 - MIR3 SINE MIR -37 171 111 246 116 0 0 chrX 132652064 132652107 -29947823 + (TAATG)n Simple_repeat Simple_repeat 5 47 0 201 132 38 19 chrX 132653185 132653238 -29946692 + GA-rich Low_complexity Low_complexity 1 54 0 597 208 8 0 chrX 132653669 132653789 -29946141 - MER94 DNA DNA -1 133 13 1247 243 67 67 chrX 132654223 132654734 -29945196 - MLT1J LTR MaLR 0 511 1 26 0 0 0 chrX 132655637 132655663 -29944267 + AT_rich Low_complexity Low_complexity 1 26 0 1666 217 33 33 chrX 132656698 132657233 -29942697 - L1M3e LINE L1 -5305 1725 5 1364 277 42 27 chrX 132657231 132658013 -29941917 + L1ME2 LINE L1 5143 5940 -230 * 230 139 0 0 chrX 132658077 132658113 -29941817 + L1ME2 LINE L1 5961 5996 -168 417 270 134 100 chrX 132658332 132658751 -29941179 + L2 LINE L2 2815 3247 -66 362 265 81 128 chrX 132658757 132659055 -29940875 + L2 LINE L2 2987 3270 -2 815 250 60 10 chrX 132660519 132660719 -29939211 - MER63A DNA MER1_type 0 210 1 371 282 138 12 chrX 132662194 132662415 -29937515 - MLT1H LTR MaLR -4 545 227 715 278 29 95 chrX 132662647 132662848 -29937082 + L3 LINE CR1 970 1136 -441 1573 206 19 22 chrX 132662848 132663212 -29936718 + MLT1A1 LTR MaLR 1 363 -2 715 278 29 95 chrX 132663212 132663388 -29936542 + L3 LINE CR1 1136 1322 -255 * 1513 271 21 45 chrX 132663387 132663714 -29936216 + L2 LINE L2 2752 3050 -263 2129 114 0 0 chrX 132663714 132664015 -29935915 + AluSx SINE Alu 3 303 0 1513 271 21 45 chrX 132664015 132664273 -29935657 + L2 LINE L2 3050 3313 0 444 310 38 25 chrX 132664299 132664457 -29935473 + L3 LINE CR1 1412 1571 -6 287 115 0 0 chrX 132665039 132665091 -29934839 - L1MA4A LINE L1 -1 6302 6251 415 325 53 0 chrX 132665224 132665338 -29934592 - MIR SINE MIR -59 149 30 411 289 67 13 chrX 132666038 132666187 -29933743 + MIR SINE MIR 34 190 -72 398 345 0 9 chrX 132666492 132666605 -29933325 - MIR SINE MIR -78 130 19 1315 136 25 0 chrX 132666637 132666880 -29933050 + L1MA4 LINE L1 6046 6294 -6 437 354 49 6 chrX 132666924 132667088 -29932842 - MIR3 SINE MIR -4 204 34 393 313 97 11 chrX 132668370 132668546 -29931384 + MIR3 SINE MIR 9 199 -9 632 175 181 6 chrX 132668594 132668754 -29931176 + MER58C DNA MER1_type 28 215 0 504 253 42 20 chrX 132668772 132668925 -29931005 + MIR SINE MIR 50 204 -58 454 144 60 6 chrX 132668939 132669106 -29930824 + (TA)n Simple_repeat Simple_repeat 1 176 0 277 361 38 15 chrX 132669277 132669410 -29930520 - MIR3 SINE MIR -8 200 65 1268 206 27 54 chrX 132669492 132669860 -29930070 - L1MC4 LINE L1 -1 8041 7684 294 255 29 20 chrX 132670875 132670977 -29928953 - L1ME3A LINE L1 -8 6162 6060 597 211 233 8 chrX 132671171 132671457 -29928473 - L1MD2 LINE L1 -225 6339 6010 624 203 0 0 chrX 132671457 132671575 -29928355 - MER94 DNA DNA 0 134 17 772 250 37 37 chrX 132671587 132671859 -29928071 - L1MD2 LINE L1 -547 6017 5746 598 296 77 31 chrX 132671981 132672498 -29927432 - L1MD2 LINE L1 -3929 2792 2252 357 265 125 63 chrX 132672538 132672995 -29926935 - L1MD2 LINE L1 -4789 1751 1267 357 331 38 25 chrX 132673013 132673173 -29926757 - HAL1 LINE L1 -1513 994 833 2106 153 43 7 chrX 132673182 132673575 -29926355 - L1MC1 LINE L1 0 7763 6133 207 0 0 0 chrX 132674269 132674292 -29925638 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chrX 132674337 132674358 -29925572 + AT_rich Low_complexity Low_complexity 1 21 0 1979 151 0 3 chrX 132675724 132676028 -29923902 + AluSx SINE Alu 1 303 -9 462 286 60 75 chrX 132676593 132676989 -29922941 - L1MEd LINE L1 -3982 2259 1874 2284 101 0 0 chrX 132677126 132677422 -29922508 - AluSg SINE Alu -7 303 8 5789 146 31 13 chrX 132677441 132678541 -29921389 - L1MA6 LINE L1 0 6300 5171 9091 37 2 1 chrX 132678541 132679611 -29920319 - MER11C LTR ERVK 0 1071 1 5789 146 31 13 chrX 132679611 132679852 -29920078 - L1MA6 LINE L1 -1129 5171 4936 1630 283 18 45 chrX 132680221 132680846 -29919084 - L1M3b LINE L1 -5669 612 5 763 276 84 34 chrX 132680880 132681568 -29918362 - L1MEd LINE L1 -4646 1750 1002 1051 303 47 74 chrX 132681665 132681957 -29917973 - L1MEd LINE L1 -5436 769 471 186 43 0 0 chrX 132681957 132681980 -29917950 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1051 303 47 74 chrX 132681980 132682389 -29917541 - L1MEd LINE L1 -5734 471 87 21 0 0 0 chrX 132682730 132682751 -29917179 + AT_rich Low_complexity Low_complexity 1 21 0 2089 241 52 11 chrX 132683064 132683588 -29916342 + MER90 LTR ERV1 68 612 -2 198 0 0 0 chrX 132684556 132684578 -29915352 + (CA)n Simple_repeat Simple_repeat 2 23 0 7426 32 11 0 chrX 132685028 132685920 -29914010 - L1PA4 LINE L1 0 6155 5254 199 237 0 0 chrX 132686462 132686500 -29913430 - L2 LINE L2 -10 3303 3266 1914 188 55 35 chrX 132686927 132687385 -29912545 + MLT1C LTR MaLR 1 467 0 459 214 262 0 chrX 132687659 132687785 -29912145 - MSTD LTR MaLR -235 161 3 189 0 0 0 chrX 132687885 132687906 -29912024 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 195 42 0 0 chrX 132687918 132687942 -29911988 + (TA)n Simple_repeat Simple_repeat 1 24 0 7409 80 8 1 chrX 132688822 132690605 -29909325 + L1PA7 LINE L1 4364 6152 -2 318 183 0 0 chrX 132690683 132690754 -29909176 + (CA)n Simple_repeat Simple_repeat 2 72 0 2872 150 9 67 chrX 132690758 132691297 -29908633 - MLT2B3 LTR ERVL -46 508 1 644 274 41 5 chrX 132691524 132691721 -29908209 + L2 LINE L2 3097 3300 -13 900 101 0 0 chrX 132693840 132693978 -29905952 + L1MB7 LINE L1 6047 6184 0 2377 69 0 0 chrX 132695077 132695366 -29904564 + AluY SINE Alu 1 289 -22 27 0 0 0 chrX 132695372 132695399 -29904531 + AT_rich Low_complexity Low_complexity 1 27 0 249 369 0 16 chrX 132695399 132695521 -29904409 - L2 LINE L2 -237 3035 2916 2828 10 0 0 chrX 132695868 132696173 -29903757 - AluYa5 SINE Alu -6 305 1 344 247 149 58 chrX 132696410 132696564 -29903366 - L2 LINE L2 0 3313 3146 6732 89 7 1 chrX 132699134 132700085 -29899845 + L1P LINE L1 4297 5253 -893 3806 110 123 40 chrX 132700085 132701178 -29898752 - MER11A LTR ERVK 0 1236 1 6971 54 12 0 chrX 132701183 132702073 -29897857 + L1PA7 LINE L1 5254 6154 0 435 19 0 0 chrX 132702508 132702560 -29897370 + (GA)n Simple_repeat Simple_repeat 1 52 0 1389 111 81 26 chrX 132703339 132703610 -29896320 + L1MA4 LINE L1 6015 6300 0 585 322 17 38 chrX 132703673 132703775 -29896155 - MIR SINE MIR -9 253 150 14847 129 29 6 chrX 132703775 132706138 -29893792 - Tigger1 DNA MER2_type -1 2417 1 585 322 17 38 chrX 132706138 132706274 -29893656 - MIR SINE MIR -112 150 20 1854 140 26 26 chrX 132706355 132706663 -29893267 - AluJo SINE Alu -4 308 1 207 0 0 0 chrX 132706876 132706899 -29893031 + (TG)n Simple_repeat Simple_repeat 1 23 0 439 288 8 17 chrX 132707156 132707274 -29892656 - MIR3 SINE MIR -82 126 10 305 253 13 0 chrX 132707278 132707353 -29892577 + L2 LINE L2 3195 3270 -2 599 272 30 6 chrX 132707624 132707799 -29892131 + MIR SINE MIR 9 191 -64 2453 59 26 0 chrX 132708862 132709165 -29890765 - AluY SINE Alu 0 311 1 433 301 82 14 chrX 132709244 132709463 -29890467 + MIR SINE MIR 26 259 -3 22 35 0 0 chrX 132712090 132712119 -29887811 + AT_rich Low_complexity Low_complexity 1 29 0 566 318 63 0 chrX 132713046 132713235 -29886695 + MIR SINE MIR 2 202 -60 234 368 57 9 chrX 132713345 132713451 -29886479 + L2 LINE L2 3158 3268 -4 3081 173 15 2 chrX 132713680 132714222 -29885708 - MER44D DNA MER2_type 0 605 2 212 189 0 0 chrX 132714380 132714417 -29885513 + (TA)n Simple_repeat Simple_repeat 1 37 0 970 215 82 82 chrX 132715622 132715999 -29883931 - MSTD LTR MaLR -19 377 1 534 225 70 8 chrX 132716004 132716133 -29883797 - MIR SINE MIR -48 214 78 2343 94 0 10 chrX 132717289 132717598 -29882332 + AluSx SINE Alu 6 311 -1 411 21 0 0 chrX 132717951 132717999 -29881931 + (TG)n Simple_repeat Simple_repeat 1 48 0 270 0 0 0 chrX 132717998 132718028 -29881902 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 286 236 0 0 chrX 132718565 132718620 -29881310 - L2 LINE L2 -4 3268 3214 292 400 35 6 chrX 132718741 132718911 -29881019 + MIR3 SINE MIR 25 199 -9 943 212 32 28 chrX 132719612 132719829 -29880101 + MER20 DNA MER1_type 2 219 0 624 214 79 0 chrX 132719838 132719964 -29879966 - L2 LINE L2 0 3272 3137 434 357 45 66 chrX 132720053 132720641 -29879289 - L2 LINE L2 -4 3268 2696 184 296 183 0 chrX 132720938 132721009 -29878921 + L2 LINE L2 3173 3256 -16 192 40 0 0 chrX 132721013 132721038 -29878892 + (CAT)n Simple_repeat Simple_repeat 2 26 0 287 288 38 0 chrX 132721044 132721124 -29878806 - MIR SINE MIR -70 192 110 400 171 12 219 chrX 132721408 132721654 -29878276 + MER112 DNA MER1_type 1 195 -65 2881 115 8 34 chrX 132721788 132722256 -29877674 + L1PA15 LINE L1 5709 6164 -1 333 277 95 34 chrX 132724107 132724255 -29875675 - MIR SINE MIR -25 237 81 2343 134 38 0 chrX 132725116 132725460 -29874470 - LTR18A LTR ERVL 0 357 1 437 305 8 15 chrX 132726559 132726690 -29873240 - MIR3 SINE MIR -31 177 48 380 311 32 78 chrX 132726802 132727021 -29872909 + MIR SINE MIR 20 228 -34 252 0 0 0 chrX 132727352 132727380 -29872550 + (A)n Simple_repeat Simple_repeat 1 28 0 2123 54 3 118 chrX 132728134 132728466 -29871464 - AluY SINE Alu -17 294 1 2449 49 13 3 chrX 132728475 132728782 -29871148 - AluY SINE Alu -1 310 1 293 277 53 11 chrX 132729125 132729219 -29870711 + MIR3 SINE MIR 109 206 -2 * 658 265 64 20 chrX 132729217 132729421 -29870509 - MIR SINE MIR -1 261 49 391 277 38 58 chrX 132729821 132730035 -29869895 - MLT1J2 LTR MaLR -3 434 233 283 258 46 46 chrX 132730086 132730239 -29869691 - MLT1J2 LTR MaLR -286 160 3 21 0 0 0 chrX 132731264 132731285 -29868645 + AT_rich Low_complexity Low_complexity 1 21 0 382 340 86 76 chrX 132731440 132732128 -29867802 + L2 LINE L2 2577 3262 -10 848 272 12 24 chrX 132732649 132732899 -29867031 + MIR SINE MIR 5 251 -11 503 311 72 6 chrX 132732906 132733086 -29866844 + MIR3 SINE MIR 3 194 -14 251 207 17 0 chrX 132733977 132734035 -29865895 - MER116 DNA Mariner -21 59 1 5341 199 12 16 chrX 132734165 132736169 -29863761 - L1PA15 LINE L1 0 7603 5599 19757 113 16 8 chrX 132736184 132739154 -29860776 - L1PA8 LINE L1 -1 6171 3165 1994 87 14 4 chrX 132739154 132739429 -29860501 - AluY SINE Alu -7 304 27 19757 113 16 8 chrX 132739429 132740560 -29859370 - L1PA8 LINE L1 -3007 3165 2045 6525 48 4 0 chrX 132740567 132741408 -29858522 - L1PA7 LINE L1 -2 6152 5309 3287 86 2 0 chrX 132741408 132741894 -29858036 + L1PA7 LINE L1 4809 5295 -851 4135 212 53 10 chrX 132741900 132742864 -29857066 - L1PA8 LINE L1 -4094 2052 1039 183 42 0 0 chrX 132742864 132742888 -29857042 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4135 212 53 10 chrX 132742888 132742958 -29856972 - L1PA8 LINE L1 -5107 1039 973 3195 217 13 13 chrX 132742953 132743740 -29856190 - L1PA15 LINE L1 -4114 3470 2684 * 1550 99 43 9 chrX 132743986 132744218 -29855712 - L1PA11 LINE L1 -10 6164 5925 26 0 0 0 chrX 132744218 132744244 -29855686 + AT_rich Low_complexity Low_complexity 1 26 0 40873 31 23 2 chrX 132744244 132750260 -29849670 - L1PA3 LINE L1 -4 6151 2 3300 294 41 52 chrX 132750262 132752470 -29847460 - L1PA15 LINE L1 -4859 2722 1 211 299 0 0 chrX 132752541 132752608 -29847322 + T-rich Low_complexity Low_complexity 1 67 0 426 295 65 0 chrX 132752680 132752819 -29847111 + MIR SINE MIR 53 200 -62 19069 160 30 24 chrX 132752821 132760481 -29839449 + L1MA2 LINE L1 19 7723 0 23 33 0 0 chrX 132760481 132760511 -29839419 + AT_rich Low_complexity Low_complexity 1 30 0 189 343 86 54 chrX 132760740 132761055 -29838875 + L2 LINE L2 2639 2963 -351 1361 91 24 131 chrX 132961659 132961779 -29638151 - L1MA3 LINE L1 -42 6263 6132 2403 74 0 3 chrX 132961779 132962091 -29637839 - AluY SINE Alu 0 311 1 1361 91 24 131 chrX 132962091 132962124 -29637806 - L1MA3 LINE L1 -173 6132 6097 2366 91 0 0 chrX 132962124 132962433 -29637497 - AluSp SINE Alu -4 309 1 1361 91 24 131 chrX 132962433 132962576 -29637354 - L1MA3 LINE L1 -208 6097 5998 402 282 77 0 chrX 132962576 132962693 -29637237 + MIR SINE MIR 131 256 -6 1850 177 0 6 chrX 132963502 132963813 -29636117 - AluJo SINE Alu -3 309 1 2044 130 13 0 chrX 132964043 132964351 -29635579 + AluSx SINE Alu 1 312 0 420 115 23 23 chrX 132964358 132964445 -29635485 + GA-rich Low_complexity Low_complexity 2 88 0 947 148 0 88 chrX 132964810 132964992 -29634938 - AluJo/FRAM SINE Alu 0 302 137 1431 133 0 0 chrX 132964995 132965205 -29634725 - AluSg/x SINE Alu -5 307 98 188 326 21 32 chrX 132966102 132966197 -29633733 + MIR SINE MIR 59 152 -56 268 313 48 0 chrX 132966914 132966997 -29632933 + MIR SINE MIR 120 206 -56 2093 90 45 0 chrX 132967021 132967310 -29632620 - AluSx SINE Alu -10 302 1 895 98 0 8 chrX 132967671 132967803 -29632127 + AluSp/q SINE Alu 182 312 -1 2172 99 0 3 chrX 132967976 132968269 -29631661 + AluSx SINE Alu 2 293 -19 2259 106 0 0 chrX 132968470 132968781 -29631149 - AluSq SINE Alu -2 311 1 198 288 0 61 chrX 132968888 132968954 -29630976 - MIR SINE MIR -84 124 63 2238 100 10 0 chrX 132970608 132970917 -29629013 - AluSx SINE Alu 0 312 1 823 157 8 15 chrX 132970924 132971058 -29628872 - FLAM_C SINE Alu 0 133 1 397 301 91 28 chrX 132971077 132971220 -29628710 - MIR3 SINE MIR -6 202 51 753 124 43 124 chrX 132971457 132971589 -29628341 - L1MB8 LINE L1 -7 6171 6060 1916 137 0 3 chrX 132971589 132971898 -29628032 + AluSx SINE Alu 1 308 0 753 124 43 124 chrX 132971898 132971974 -29627956 - L1MB8 LINE L1 -118 6060 5979 225 318 35 59 chrX 132972614 132972771 -29627159 + MIR SINE MIR 20 171 -37 236 126 0 0 chrX 132972817 132972856 -29627074 + MIR SINE MIR 45 83 -125 2154 102 3 16 chrX 132973480 132973656 -29626274 - AluSx SINE Alu -3 309 132 221 0 0 33 chrX 132973656 132973686 -29626244 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2134 89 7 0 chrX 132973686 132973967 -29625963 - AluSg SINE Alu -27 283 1 2154 102 3 16 chrX 132973967 132974102 -29625828 - AluSx SINE Alu -178 134 1 1044 186 68 55 chrX 132974673 132974729 -29625201 - MER8 DNA MER2_type 0 239 185 1648 130 68 41 chrX 132974729 132975021 -29624909 - AluSx SINE Alu -12 300 1 1044 186 68 55 chrX 132975021 132975200 -29624730 - MER8 DNA MER2_type -54 185 1 527 205 149 19 chrX 132976216 132976377 -29623553 - MIR3 SINE MIR -23 185 4 875 126 0 0 chrX 132976468 132976595 -29623335 + FLAM_C SINE Alu 5 131 -2 21 0 0 31 chrX 132976605 132976617 -29623313 + AT_rich Low_complexity Low_complexity 1 12 -19 2254 86 0 3 chrX 132976617 132976908 -29623022 - AluSq SINE Alu -23 290 1 21 0 0 31 chrX 132976908 132976927 -29623003 + AT_rich Low_complexity Low_complexity 12 31 0 1437 163 0 4 chrX 132976995 132977228 -29622702 + AluJo SINE Alu 57 288 -24 649 207 37 7 chrX 132977249 132977384 -29622546 - MER58 DNA MER1_type -2281 139 1 331 313 30 8 chrX 132977447 132977581 -29622349 - L2 LINE L2 -214 3058 2922 2319 97 0 3 chrX 132977650 132977961 -29621969 - AluSg SINE Alu 0 310 1 508 33 0 0 chrX 132977961 132978021 -29621909 - AluSq/x SINE Alu -175 137 78 1251 167 0 14 chrX 132978021 132978236 -29621694 - AluSx SINE Alu -100 212 1 261 163 186 35 chrX 132978330 132978416 -29621514 + MIR3 SINE MIR 14 112 -96 1848 123 14 0 chrX 132978550 132978827 -29621103 - AluSx SINE Alu -23 289 9 206 333 0 14 chrX 132979096 132979165 -29620765 + MIR SINE MIR 16 83 -125 2126 62 7 28 chrX 132980408 132980748 -29619182 + AluSp SINE Alu 1 334 0 1967 124 0 33 chrX 132980757 132981063 -29618867 + AluSx SINE Alu 1 296 -16 716 250 56 23 chrX 132981132 132981422 -29618508 + L1MC/D LINE L1 4627 4948 -1198 1668 186 23 7 chrX 132981434 132981741 -29618189 + AluJo SINE Alu 1 312 0 662 149 0 8 chrX 132981756 132981877 -29618053 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 1700 193 15 26 chrX 132981879 132982418 -29617512 + L1MC/D LINE L1 4942 5471 -743 378 0 0 0 chrX 132983176 132983218 -29616712 + (CA)n Simple_repeat Simple_repeat 2 43 0 527 184 179 89 chrX 132983425 132983604 -29616326 - MIR SINE MIR 0 262 68 2146 103 0 32 chrX 132983775 132984087 -29615843 + AluSx SINE Alu 1 302 -10 333 0 0 0 chrX 132984752 132984789 -29615141 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 203 34 34 chrX 132985254 132985313 -29614617 + L2 LINE L2 3247 3305 -8 1887 126 0 7 chrX 132985881 132986195 -29613735 + AluSx SINE Alu 1 312 0 608 242 132 37 chrX 132986613 132986803 -29613127 - MIR SINE MIR -21 241 34 2305 74 7 0 chrX 132986815 132987112 -29612818 + AluSp SINE Alu 1 299 -14 600 176 0 0 chrX 132987121 132987223 -29612707 + FRAM SINE Alu 72 173 -3 248 191 11 56 chrX 132989410 132989499 -29610431 + C-rich Low_complexity Low_complexity 1 85 0 231 232 32 32 chrX 132989632 132989727 -29610203 + (CGGGG)n Simple_repeat Simple_repeat 1 95 0 206 158 21 32 chrX 132989825 132989920 -29610010 + GA-rich Low_complexity Low_complexity 3 96 0 24 32 0 0 chrX 132989941 132989972 -29609958 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 132990086 132990108 -29609822 + GC_rich Low_complexity Low_complexity 1 22 0 504 228 28 28 chrX 132991329 132991474 -29608456 + MIR SINE MIR 17 161 -101 2207 108 3 0 chrX 132991474 132991779 -29608151 + AluSx SINE Alu 1 306 -6 2364 65 0 10 chrX 132991901 132992207 -29607723 + AluY SINE Alu 1 303 -8 287 315 12 12 chrX 132993656 132993821 -29606109 + (TG)n Simple_repeat Simple_repeat 1 165 0 234 116 0 0 chrX 132995177 132995220 -29604710 + (T)n Simple_repeat Simple_repeat 1 43 0 1979 84 18 21 chrX 132996207 132996493 -29603437 - AluSx SINE Alu 0 312 28 458 234 114 30 chrX 132998140 132998307 -29601623 - MIR3 SINE MIR -12 196 16 2096 92 16 31 chrX 132998383 132998700 -29601230 + AluSx SINE Alu 1 312 0 825 136 0 0 chrX 132998921 132999039 -29600891 + FLAM_C SINE Alu 1 118 -15 341 338 27 34 chrX 132999156 132999304 -29600626 + L2 LINE L2 3126 3272 0 2892 180 54 30 chrX 132999601 133000195 -29599735 - MER90 LTR ERV1 0 614 7 213 271 0 0 chrX 133000585 133000633 -29599297 + G-rich Low_complexity Low_complexity 1 48 0 2337 79 3 3 chrX 133001186 133001489 -29598441 + AluSx SINE Alu 10 312 0 247 358 68 6 chrX 133001888 133002006 -29597924 - L2 LINE L2 -240 3032 2900 267 31 0 0 chrX 133002006 133002038 -29597892 + (TG)n Simple_repeat Simple_repeat 2 33 0 247 358 68 6 chrX 133002038 133002081 -29597849 - L2 LINE L2 -372 2900 2861 2256 105 0 0 chrX 133002655 133002960 -29596970 - AluSx SINE Alu -1 311 7 2158 107 3 0 chrX 133003267 133003567 -29596363 + AluSp SINE Alu 1 301 -12 388 290 21 48 chrX 133003912 133004057 -29595873 - L2 LINE L2 -1 3312 3172 1101 195 19 5 chrX 133005494 133005699 -29594231 - MER3 DNA MER1_type 0 209 2 2149 95 10 3 chrX 133006854 133007148 -29592782 - AluSq SINE Alu -17 296 1 772 138 0 92 chrX 133007522 133007674 -29592256 - FLAM_C SINE Alu 0 143 6 2097 70 0 0 chrX 133007719 133007978 -29591952 - AluSg SINE Alu -9 301 43 1830 153 3 13 chrX 133008606 133008906 -29591024 - AluJb SINE Alu -15 297 1 1987 111 17 3 chrX 133008935 133009232 -29590698 + AluSg SINE Alu 1 301 -9 346 273 47 126 chrX 133009432 133009710 -29590220 - L2 LINE L2 0 3272 3017 289 238 163 33 chrX 133009753 133009993 -29589937 + L1ME4a LINE L1 5734 6004 -117 324 263 54 133 chrX 133010377 133010655 -29589275 - L2 LINE L2 0 3272 3017 386 232 191 39 chrX 133010698 133011002 -29588928 + L1ME4a LINE L1 5734 6095 -26 2158 112 0 23 chrX 133011002 133011306 -29588624 - AluSx SINE Alu -15 297 1 386 232 191 39 chrX 133011306 133011337 -29588593 + L1ME4a LINE L1 6095 6120 -1 28 0 0 0 chrX 133011348 133011376 -29588554 + AT_rich Low_complexity Low_complexity 1 28 0 2408 93 3 0 chrX 133013700 133014000 -29585930 + AluSp SINE Alu 1 301 -12 2527 66 0 0 chrX 133014103 133014405 -29585525 + AluY SINE Alu 1 302 -9 999 157 60 46 chrX 133014804 133015020 -29584910 + MER20 DNA MER1_type 1 219 0 1497 97 14 42 chrX 133015048 133015265 -29584665 + AluSg/x SINE Alu 86 296 -16 343 310 0 0 chrX 133015538 133015638 -29584292 - MIR SINE MIR -76 132 33 831 102 36 22 chrX 133016588 133016725 -29583205 - L1MB7 LINE L1 -10 6174 6036 2240 118 3 0 chrX 133016754 133017058 -29582872 + AluSx SINE Alu 1 305 -7 227 29 57 0 chrX 133017068 133017103 -29582827 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 405 307 147 45 chrX 133017363 133017676 -29582254 + L2 LINE L2 298 642 -2672 188 329 0 14 chrX 133017911 133017981 -29581949 + MIR SINE MIR 15 83 -179 216 286 36 0 chrX 133018168 133018224 -29581706 - L2 LINE L2 -218 3054 2997 200 274 24 89 chrX 133018258 133018382 -29581548 + L2 LINE L2 1331 1446 -1868 1971 109 0 8 chrX 133018563 133018829 -29581101 - AluSx SINE Alu -12 300 37 935 342 59 21 chrX 133018840 133019468 -29580462 + L2 LINE L2 1914 2565 -749 2061 107 35 21 chrX 133019488 133019777 -29580153 + AluSx SINE Alu 1 293 -19 626 228 30 64 chrX 133019843 133020045 -29579885 + MIR SINE MIR 30 224 -38 479 316 87 50 chrX 133020094 133020562 -29579368 + L2 LINE L2 2553 3057 -215 228 333 25 17 chrX 133020732 133020852 -29579078 + L2 LINE L2 1457 1577 -1737 1155 174 18 18 chrX 133021661 133021880 -29578050 + MER20 DNA MER1_type 1 219 0 28 29 0 0 chrX 133022039 133022074 -29577856 + AT_rich Low_complexity Low_complexity 1 35 0 1698 163 0 21 chrX 133022074 133022362 -29577568 + AluJo SINE Alu 1 282 -30 375 23 0 0 chrX 133022370 133022414 -29577516 + (TG)n Simple_repeat Simple_repeat 1 44 0 2206 111 0 16 chrX 133022798 133023105 -29576825 + AluSc SINE Alu 1 302 -7 2402 91 3 0 chrX 133024468 133024776 -29575154 + AluSq SINE Alu 1 309 -4 2189 120 0 0 chrX 133024839 133025138 -29574792 - AluSx SINE Alu -13 299 1 1040 167 0 28 chrX 133027180 133027360 -29572570 + FAM SINE Alu 1 175 0 550 115 0 0 chrX 133027403 133027481 -29572449 + AluS SINE Alu 2 79 -234 633 81 0 0 chrX 133027763 133027849 -29572081 + Alu SINE Alu 223 308 -1 2390 97 0 0 chrX 133027982 133028281 -29571649 - AluSg SINE Alu -11 299 1 1955 148 7 0 chrX 133028601 133028906 -29571024 + AluSx SINE Alu 1 307 -5 328 108 62 0 chrX 133028927 133028992 -29570938 + A-rich Low_complexity Low_complexity 3 71 0 642 198 105 46 chrX 133029646 133029884 -29570046 - MER112 DNA MER1_type 0 256 5 2331 56 0 65 chrX 133029893 133030217 -29569713 + AluY SINE Alu 1 303 -8 1412 175 38 102 chrX 133030364 133030764 -29569166 + MLT1A2 LTR MaLR 1 374 0 1602 182 55 48 chrX 133034291 133034527 -29565403 - MER58B DNA MER1_type -2086 334 101 2370 57 47 14 chrX 133034527 133034823 -29565107 + AluSc SINE Alu 1 306 -3 2398 99 0 3 chrX 133034823 133035135 -29564795 + AluSp SINE Alu 1 311 -2 1602 182 55 48 chrX 133035135 133035227 -29564703 - MER58B DNA MER1_type -2318 102 3 851 183 69 6 chrX 133035236 133035381 -29564549 - MER5A DNA MER1_type 0 189 30 186 43 0 0 chrX 133035381 133035404 -29564526 + (CTG)n Simple_repeat Simple_repeat 1 23 0 851 183 69 6 chrX 133035404 133035433 -29564497 - MER5A DNA MER1_type -159 30 4 1275 70 0 64 chrX 133035444 133035631 -29564299 + MER30 DNA MER1_type 1 175 -55 695 249 131 34 chrX 133035820 133036117 -29563813 - MER46C DNA MER2_type -11 327 2 22 70 0 0 chrX 133036435 133036478 -29563452 + AT_rich Low_complexity Low_complexity 1 43 0 1452 115 5 5 chrX 133036671 133036880 -29563050 - AluJb SINE Alu -19 293 85 222 161 0 71 chrX 133037313 133037369 -29562561 + L2 LINE L2 3261 3312 -1 762 177 0 8 chrX 133037434 133037558 -29562372 - FLAM_A SINE Alu -9 124 2 917 108 0 0 chrX 133037603 133037723 -29562207 + AluSq/x SINE Alu 1 120 -192 329 42 0 21 chrX 133037726 133037774 -29562156 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2462 89 0 0 chrX 133038073 133038375 -29561555 + AluSg SINE Alu 1 302 -8 2300 104 3 0 chrX 133038452 133038749 -29561181 - AluSx SINE Alu -14 298 1 210 371 41 0 chrX 133038938 133039035 -29560895 - L2 LINE L2 -26 3287 3187 1961 93 19 4 chrX 133039908 133040167 -29559763 + AluSg SINE Alu 38 300 -10 2585 38 0 42 chrX 133040717 133041030 -29558900 + AluY SINE Alu 2 301 -10 615 236 84 11 chrX 133041577 133041755 -29558175 + MIR3 SINE MIR 7 197 -11 200 125 0 0 chrX 133043487 133043519 -29556411 - L2 LINE L2 -4 3309 3278 377 81 0 113 chrX 133043565 133043627 -29556303 + Tigger5 DNA MER2_type 1 55 -2268 * 431 111 28 14 chrX 133043596 133043668 -29556262 + Tigger5 DNA MER2_type 2251 2323 0 270 114 0 23 chrX 133043668 133043712 -29556218 + Tigger5 DNA MER2_type 13 55 -2268 * 396 148 49 12 chrX 133043704 133043785 -29556145 + Tigger5 DNA MER2_type 2215 2298 -25 403 231 289 13 chrX 133044033 133044189 -29555741 + MIR SINE MIR 17 215 -47 2135 135 0 0 chrX 133044303 133044606 -29555324 + AluSx SINE Alu 1 303 -9 1742 148 34 30 chrX 133044738 133045036 -29554894 + AluJo SINE Alu 1 299 -13 25 0 0 0 chrX 133045334 133045359 -29554571 + AT_rich Low_complexity Low_complexity 1 25 0 216 200 0 0 chrX 133047733 133047783 -29552147 + (CA)n Simple_repeat Simple_repeat 1 50 0 186 43 0 0 chrX 133050806 133050829 -29549101 + (TAA)n Simple_repeat Simple_repeat 2 24 0 559 202 0 25 chrX 133050858 133050977 -29548953 - MIR SINE MIR -48 214 99 2391 86 0 0 chrX 133051302 133051593 -29548337 - AluSq SINE Alu -9 304 14 646 244 89 11 chrX 133051641 133051821 -29548109 - MIR3 SINE MIR -12 196 3 311 279 111 47 chrX 133053115 133053305 -29546625 - MIR SINE MIR -3 259 58 389 210 80 0 chrX 133053431 133053531 -29546399 - MIR SINE MIR -76 186 79 1532 158 0 31 chrX 133053866 133054125 -29545805 + AluJo SINE Alu 31 281 -31 222 37 0 0 chrX 133054130 133054157 -29545773 + (GA)n Simple_repeat Simple_repeat 2 28 0 1978 124 0 11 chrX 133054157 133054439 -29545491 + AluJb SINE Alu 3 281 -31 30 0 0 44 chrX 133054440 133054463 -29545467 + AT_rich Low_complexity Low_complexity 1 23 -20 2524 57 0 3 chrX 133054463 133054761 -29545169 - AluY SINE Alu -13 298 2 30 0 0 44 chrX 133054761 133054782 -29545148 + AT_rich Low_complexity Low_complexity 23 43 0 384 173 0 0 chrX 133056128 133056203 -29543727 + AluSx SINE Alu 1 62 -246 288 196 0 0 chrX 133056201 133056247 -29543683 - Alu SINE Alu -255 48 3 * 2193 107 7 7 chrX 133056254 133056564 -29543366 - AluY SINE Alu -1 310 1 1959 96 0 0 chrX 133056593 133056842 -29543088 + AluSx SINE Alu 61 309 -3 2036 115 32 4 chrX 133057481 133057760 -29542170 + AluSx SINE Alu 1 286 -26 181 0 0 0 chrX 133057760 133057780 -29542150 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 907 126 0 0 chrX 133057839 133057966 -29541964 + FLAM_C SINE Alu 12 138 -5 499 100 58 8 chrX 133057966 133058086 -29541844 + (TA)n Simple_repeat Simple_repeat 1 126 0 332 283 99 21 chrX 133058088 133058279 -29541651 - L1ME4a LINE L1 -23 6098 5893 2198 92 0 7 chrX 133058280 133058574 -29541356 + AluY SINE Alu 1 292 -19 658 201 73 6 chrX 133058574 133058738 -29541192 - L1ME4a LINE L1 -402 5719 5545 2288 97 3 0 chrX 133058899 133059197 -29540733 - AluSp SINE Alu -14 299 1 2187 111 10 0 chrX 133060266 133060563 -29539367 + AluSx SINE Alu 1 300 -12 204 311 134 17 chrX 133060703 133060822 -29539108 - L2 LINE L2 -11 3302 3170 2214 98 3 7 chrX 133061146 133061443 -29538487 - AluSx SINE Alu -16 296 1 249 33 0 0 chrX 133062392 133062422 -29537508 + (TCCCC)n Simple_repeat Simple_repeat 3 32 0 264 149 0 0 chrX 133062423 133062470 -29537460 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 503 118 12 0 chrX 133062595 133062680 -29537250 + (TTCC)n Simple_repeat Simple_repeat 1 86 0 2268 99 13 0 chrX 133062680 133062983 -29536947 - AluSq SINE Alu -6 307 1 963 252 97 47 chrX 133062995 133063283 -29536647 - L2 LINE L2 -9 3304 2983 1676 201 0 6 chrX 133063283 133063596 -29536334 + AluJb SINE Alu 1 311 -1 963 252 97 47 chrX 133063596 133063771 -29536159 - L2 LINE L2 -330 2983 2818 1986 127 45 0 chrX 133063793 133064114 -29535816 - AluSx SINE Alu 0 312 1 1153 175 14 14 chrX 133064119 133064336 -29535594 - AluJb SINE Alu -18 294 78 456 251 114 86 chrX 133064691 133064809 -29535121 - MIR SINE MIR 0 262 149 2178 88 0 34 chrX 133064809 133065138 -29534792 - AluSg SINE Alu 0 319 1 1713 172 0 38 chrX 133065148 133065332 -29534598 - AluJo SINE Alu -10 302 133 2275 117 0 3 chrX 133065332 133065641 -29534289 + AluSx SINE Alu 1 308 -4 1713 172 0 38 chrX 133065641 133065770 -29534160 - AluJo SINE Alu -179 133 1 456 251 114 86 chrX 133065770 133065893 -29534037 - MIR SINE MIR -121 141 1 1973 112 4 0 chrX 133066736 133067005 -29532925 + AluSx SINE Alu 43 312 0 376 279 38 55 chrX 133067105 133067288 -29532642 + MER5A DNA MER1_type 2 181 -8 2426 71 0 0 chrX 133068001 133068298 -29531632 - AluY SINE Alu -14 297 1 2103 87 0 55 chrX 133068436 133068748 -29531182 + AluSg SINE Alu 1 295 -15 2167 92 4 4 chrX 133068946 133069269 -29530661 + AluSx SINE Alu 1 323 0 258 257 48 72 chrX 133069452 133069631 -29530299 - MIR SINE MIR 0 262 45 286 333 0 0 chrX 133070219 133070294 -29529636 + L3 LINE CR1 1484 1558 -19 2324 86 0 16 chrX 133071102 133071417 -29528513 + AluSx SINE Alu 1 310 -2 192 277 0 0 chrX 133071845 133071928 -29528002 + (CAG)n Simple_repeat Simple_repeat 1 83 0 389 332 62 37 chrX 133071931 133071987 -29527943 - MIR SINE MIR -14 248 195 2407 143 35 67 chrX 133071987 133072024 -29527906 + MER47B DNA MER2_type 1 38 -2285 2380 81 0 23 chrX 133072024 133072333 -29527597 - AluSg SINE Alu -8 302 1 2407 143 35 67 chrX 133072333 133072344 -29527586 + MER47B DNA MER2_type 38 48 -2275 1853 158 3 3 chrX 133072344 133072642 -29527288 - AluSx SINE Alu -14 298 1 2407 143 35 67 chrX 133072642 133073024 -29526906 + MER47B DNA MER2_type 48 418 0 389 332 62 37 chrX 133073024 133073208 -29526722 - MIR SINE MIR -67 195 1 642 88 0 0 chrX 133073470 133073550 -29526380 - MADE1 DNA Mariner 0 80 1 678 210 105 65 chrX 133073849 133074097 -29525833 - MIR SINE MIR -3 259 2 394 202 40 0 chrX 133074481 133074580 -29525350 - L1M4 LINE L1 -1306 4840 4738 2146 109 7 3 chrX 133074581 133074874 -29525056 - AluSg SINE Alu -15 295 2 2251 167 53 55 chrX 133074931 133075186 -29524744 - L1MB5 LINE L1 -167 5998 5769 2104 119 0 0 chrX 133075186 133075471 -29524459 - AluSx SINE Alu -26 286 2 2251 167 53 55 chrX 133075471 133075727 -29524203 - L1MB5 LINE L1 -396 5769 5514 1257 236 96 8 chrX 133075727 133076083 -29523847 + L2 LINE L2 2925 3311 -2 2376 55 41 0 chrX 133076091 133076383 -29523547 + AluY SINE Alu 1 304 -7 21 0 0 0 chrX 133076453 133076474 -29523456 + AT_rich Low_complexity Low_complexity 1 21 0 236 178 219 14 chrX 133076958 133077031 -29522899 + L1MB4 LINE L1 6093 6180 0 1716 160 41 24 chrX 133077291 133077584 -29522346 - AluJo SINE Alu -14 298 1 220 157 0 86 chrX 133078419 133078489 -29521441 + A-rich Low_complexity Low_complexity 2 65 0 2377 78 0 23 chrX 133078509 133078817 -29521113 + AluY SINE Alu 1 301 -10 35 63 0 0 chrX 133080134 133080197 -29519733 + AT_rich Low_complexity Low_complexity 1 63 0 2049 110 42 32 chrX 133080731 133081039 -29518891 + AluSx SINE Alu 1 311 -1 195 260 29 115 chrX 133081199 133081303 -29518627 - L2 LINE L2 0 3272 3178 2471 62 7 7 chrX 133081496 133081800 -29518130 - AluY SINE Alu -7 304 1 445 301 187 10 chrX 133082027 133082236 -29517694 - MIR SINE MIR -13 249 4 2218 104 3 10 chrX 133082498 133082795 -29517135 - AluSx SINE Alu -17 295 1 2191 98 7 0 chrX 133083277 133083563 -29516367 - AluSx SINE Alu -24 288 1 2344 94 3 0 chrX 133083831 133084129 -29515801 - AluSq SINE Alu -14 299 1 340 221 65 0 chrX 133084219 133084296 -29515634 - L2 LINE L2 0 3313 3232 2654 99 31 6 chrX 133084994 133085349 -29514581 + MLT1A1 LTR MaLR 2 365 0 258 128 43 0 chrX 133085577 133085624 -29514306 - Alu SINE Alu -4 296 248 957 203 33 0 chrX 133085967 133086149 -29513781 + MER5A DNA MER1_type 1 188 -1 2184 57 0 67 chrX 133088205 133088530 -29511400 + AluY SINE Alu 1 305 0 843 153 0 0 chrX 133089115 133089233 -29510697 - FLAM_C SINE Alu -25 118 1 1676 157 62 16 chrX 133089668 133089974 -29509956 + MER2 DNA MER2_type 6 325 -20 4342 168 40 23 chrX 133091317 133091850 -29508080 + L1MB8 LINE L1 4837 5360 -818 2226 115 3 3 chrX 133091850 133092163 -29507767 + AluSq SINE Alu 1 313 0 4342 168 40 23 chrX 133092163 133092760 -29507170 + L1MB8 LINE L1 5360 6178 0 1768 153 37 10 chrX 133093022 133093317 -29506613 + AluJo SINE Alu 1 303 -9 486 318 35 35 chrX 133093773 133093974 -29505956 + MIR SINE MIR 18 218 -44 210 204 20 0 chrX 133094001 133094050 -29505880 + (TTA)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chrX 133094178 133094206 -29505724 + AT_rich Low_complexity Low_complexity 1 28 0 2182 123 3 3 chrX 133094338 133094647 -29505283 + AluSx SINE Alu 1 309 -3 300 373 34 25 chrX 133094809 133094927 -29505003 - L2 LINE L2 -44 3228 3110 1339 135 14 0 chrX 133095195 133095410 -29504520 - L1MA4 LINE L1 -34 6266 6049 24 32 0 0 chrX 133095410 133095441 -29504489 + AT_rich Low_complexity Low_complexity 1 31 0 180 217 157 60 chrX 133095932 133096015 -29503915 - MIR3 SINE MIR -46 162 72 39 0 0 0 chrX 133096055 133096094 -29503836 + AT_rich Low_complexity Low_complexity 1 39 0 1923 239 88 68 chrX 133096489 133097410 -29502520 + L2 LINE L2 2232 3192 -121 495 0 0 0 chrX 133097410 133097465 -29502465 + (CA)n Simple_repeat Simple_repeat 1 55 0 1923 239 88 68 chrX 133097465 133097590 -29502340 + L2 LINE L2 3192 3313 0 1884 116 65 0 chrX 133097800 133098076 -29501854 - AluSq SINE Alu -15 298 5 2161 96 21 3 chrX 133098200 133098491 -29501439 - AluSx SINE Alu -16 296 1 736 229 57 16 chrX 133098598 133098790 -29501140 + MIR SINE MIR 63 262 0 2032 177 8 38 chrX 133099186 133099558 -29500372 + MLT1A1 LTR MaLR 5 365 0 1262 233 64 148 chrX 133099572 133100181 -29499749 - MER68 LTR ERV1 -4 558 1 435 195 49 92 chrX 133100532 133100696 -29499234 - MER103 DNA DNA -8 158 2 227 304 43 0 chrX 133102592 133102661 -29497269 + MER58 DNA MER1_type 1 72 -143 285 88 70 35 chrX 133102721 133102778 -29497152 + MER58 DNA MER1_type 89 147 -2273 747 236 50 30 chrX 133103059 133103258 -29496672 - MIR SINE MIR -43 219 17 2226 91 3 0 chrX 133103409 133103716 -29496214 - AluSp SINE Alu 0 308 1 1107 167 0 28 chrX 133103758 133103938 -29495992 - FAM SINE Alu 0 175 1 24 0 0 0 chrX 133106154 133106178 -29493752 + AT_rich Low_complexity Low_complexity 1 24 0 4101 108 16 23 chrX 133106226 133106871 -29493059 + L1PA16 LINE L1 5524 6163 -3 2382 81 0 7 chrX 133106878 133107174 -29492756 + AluSg SINE Alu 1 294 -16 4685 175 28 43 chrX 133107589 133108468 -29491462 + L1MA10 LINE L1 5254 6115 -219 2387 88 3 19 chrX 133108468 133108776 -29491154 + AluSp SINE Alu 1 303 -10 4685 175 28 43 chrX 133108776 133108992 -29490938 + L1MA10 LINE L1 6115 6333 -1 303 296 0 11 chrX 133109321 133109409 -29490521 + L1 LINE L1 2267 2353 -3793 2051 140 3 3 chrX 133110365 133110673 -29489257 + AluSx SINE Alu 1 308 -4 2210 133 97 15 chrX 133110722 133111134 -29488796 - L1MA4A LINE L1 -11 6292 5847 21 36 0 0 chrX 133111553 133111581 -29488349 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 133112204 133112226 -29487704 + AT_rich Low_complexity Low_complexity 1 22 0 231 250 0 0 chrX 133113542 133113590 -29486340 - MIR SINE MIR -131 131 84 182 294 0 0 chrX 133114178 133114229 -29485701 - L2 LINE L2 -2 3311 3261 430 141 22 22 chrX 133114977 133115069 -29484861 + L1MD3 LINE L1 7904 7995 0 466 189 157 78 chrX 133115099 133115316 -29484614 + L1ME LINE L1 5551 5784 -337 21 36 0 0 chrX 133115665 133115693 -29484237 + AT_rich Low_complexity Low_complexity 1 28 0 237 283 106 24 chrX 133115918 133116028 -29483902 + MIR SINE MIR 29 149 -73 * 349 343 68 30 chrX 133116023 133116259 -29483671 - MIR SINE MIR 0 262 18 23 0 0 0 chrX 133116362 133116385 -29483545 + AT_rich Low_complexity Low_complexity 1 23 0 275 213 0 0 chrX 133116425 133116472 -29483458 - MER5B DNA MER1_type -2 176 130 292 239 152 0 chrX 133116473 133116565 -29483365 - Charlie1a DNA MER1_type -1326 129 24 1892 138 7 17 chrX 133116612 133116909 -29483021 + AluJo SINE Alu 1 294 -18 724 236 80 66 chrX 133116968 133117087 -29482843 + MIR SINE MIR 47 172 -90 2160 114 3 25 chrX 133117087 133117404 -29482526 + AluSx SINE Alu 1 310 -2 724 236 80 66 chrX 133117404 133117496 -29482434 + MIR SINE MIR 172 261 -1 2223 120 0 7 chrX 133117666 133117975 -29481955 - AluSx SINE Alu -5 307 1 798 176 0 22 chrX 133117975 133118111 -29481819 - AluJo/FLAM SINE Alu -169 133 1 1900 144 3 10 chrX 133118319 133118618 -29481312 - AluJo SINE Alu -15 297 1 28 29 0 0 chrX 133118992 133119027 -29480903 + AT_rich Low_complexity Low_complexity 1 35 0 2605 61 0 3 chrX 133119629 133119941 -29479989 + AluY SINE Alu 1 311 0 1952 128 4 7 chrX 133120918 133121199 -29478731 - AluSx SINE Alu -11 301 22 2045 103 53 0 chrX 133122260 133122541 -29477389 - AluSq SINE Alu -17 296 1 325 124 0 0 chrX 133122549 133122605 -29477325 - AluSp SINE Alu -106 197 153 226 267 0 40 chrX 133122928 133123003 -29476927 + HAL1 LINE L1 485 556 -1951 403 271 53 27 chrX 133123060 133123248 -29476682 + HAL1 LINE L1 750 942 -1565 * 11653 166 43 3 chrX 133123245 133125300 -29474630 + L1PA13 LINE L1 1 2137 -4650 2601 194 65 3 chrX 133125298 133125947 -29473983 + L1PA13 LINE L1 3662 4350 -2447 * 1641 161 18 18 chrX 133125947 133126258 -29473672 + AluSx SINE Alu 2 312 0 831 229 6 11 chrX 133126266 133126441 -29473489 + AluJb SINE Alu 134 307 -5 366 255 230 20 chrX 133126458 133126658 -29473272 + HAL1 LINE L1 1660 1901 -606 720 134 10 149 chrX 133126748 133126949 -29472981 + AluSg/x SINE Alu 137 309 -3 2063 151 0 0 chrX 133126965 133127277 -29472653 + AluSx SINE Alu 1 312 0 8708 173 6 2 chrX 133127285 133127573 -29472357 + L1PA13 LINE L1 4334 4620 -2194 2381 86 0 0 chrX 133127573 133127865 -29472065 + AluSc SINE Alu 1 292 -17 8708 173 6 2 chrX 133127865 133130060 -29469870 + L1PA13 LINE L1 4620 6813 -1 320 282 46 43 chrX 133130183 133130262 -29469668 + HAL1 LINE L1 1121 1198 -1309 2826 13 0 0 chrX 133130262 133130573 -29469357 - AluYa5 SINE Alu 0 311 1 320 282 46 43 chrX 133130573 133130798 -29469132 + HAL1 LINE L1 1198 1426 -1081 1707 166 13 16 chrX 133130806 133131113 -29468817 + AluSx SINE Alu 1 306 -6 805 236 11 6 chrX 133131117 133131291 -29468639 + AluJb SINE Alu 134 308 -4 370 331 123 18 chrX 133131296 133131459 -29468471 + HAL1 LINE L1 1648 1827 -680 24 32 0 0 chrX 133131483 133131514 -29468416 + AT_rich Low_complexity Low_complexity 1 31 0 861 105 19 56 chrX 133131568 133131730 -29468200 + AluSg/x SINE Alu 137 292 -20 1784 153 10 20 chrX 133131748 133132049 -29467881 + AluSx SINE Alu 5 302 -10 2422 70 7 3 chrX 133132052 133132353 -29467577 + AluY SINE Alu 1 302 -9 375 220 105 68 chrX 133132446 133132741 -29467189 + HAL1 LINE L1 2077 2382 -125 1843 126 36 30 chrX 133132975 133133276 -29466654 + AluSg SINE Alu 3 305 -5 360 301 151 7 chrX 133133932 133134078 -29465852 + MIR SINE MIR 8 174 -88 351 311 118 18 chrX 133134605 133134833 -29465097 + L1ME4a LINE L1 5859 6109 -12 2145 111 10 0 chrX 133134844 133135132 -29464798 + AluSx SINE Alu 1 291 -21 2480 85 0 0 chrX 133135134 133135440 -29464490 + AluY SINE Alu 1 306 -5 187 388 66 25 chrX 133135662 133135783 -29464147 + MIR SINE MIR 25 150 -58 897 138 75 69 chrX 133136938 133137112 -29462818 - FAM SINE Alu 0 175 1 763 178 98 0 chrX 133137344 133137507 -29462423 - MER3 DNA MER1_type 0 209 31 4210 137 25 4 chrX 133138141 133138866 -29461064 + L1MB7 LINE L1 5436 6175 -9 2358 113 0 0 chrX 133138878 133139211 -29460719 + AluSg SINE Alu 1 333 0 421 248 79 106 chrX 133139216 133139470 -29460460 + MLT1K LTR MaLR 312 558 -30 499 332 60 15 chrX 133140740 133140939 -29458991 + MIR SINE MIR 22 229 -33 1103 182 73 3 chrX 133141072 133141374 -29458556 - Charlie1 DNA MER1_type 0 2761 2439 1612 147 68 37 chrX 133141382 133141763 -29458167 + L1MA7 LINE L1 5899 6291 0 364 197 0 0 chrX 133141837 133141908 -29458022 + U3 snRNA snRNA 1 71 -146 2279 91 0 0 chrX 133141954 133142252 -29457678 + AluSg SINE Alu 1 298 -12 253 373 64 0 chrX 133142553 133142663 -29457267 + MIR SINE MIR 24 140 -68 210 143 0 0 chrX 133143933 133143968 -29455962 + (GGA)n Simple_repeat Simple_repeat 3 37 0 564 138 0 0 chrX 133144726 133144813 -29455117 + AluSx SINE Alu 1 87 -225 896 109 8 0 chrX 133144861 133144980 -29454950 + AluSx SINE Alu 84 203 -107 2442 61 3 0 chrX 133145118 133145412 -29454518 - AluSp SINE Alu -18 295 1 298 275 0 0 chrX 133145643 133145712 -29454218 + LTR52 LTR ERVL 80 148 -273 239 243 95 0 chrX 133146338 133146412 -29453518 + L2 LINE L2 1993 2073 -1241 1389 206 14 28 chrX 133146481 133146836 -29453094 - L1MB7 LINE L1 -19 6165 5816 492 128 0 0 chrX 133146836 133146914 -29453016 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 1829 154 0 0 chrX 133146918 133147197 -29452733 - AluSx SINE Alu -31 281 3 675 185 0 40 chrX 133147200 133147337 -29452593 - L1MB7 LINE L1 -350 5828 5696 1910 169 38 19 chrX 133147337 133147705 -29452225 - THE1C LTR MaLR 0 375 1 675 185 0 40 chrX 133147705 133147718 -29452212 - L1MB7 LINE L1 -482 5696 5684 2387 87 0 3 chrX 133147720 133148019 -29451911 - AluSq SINE Alu -15 298 1 2932 181 36 50 chrX 133148030 133148183 -29451747 - L1MB8 LINE L1 -1 6177 6023 2561 62 0 0 chrX 133148183 133148487 -29451443 + AluY SINE Alu 1 304 -7 2932 181 36 50 chrX 133148487 133149080 -29450850 - L1MB8 LINE L1 -155 6023 5441 321 341 8 8 chrX 133149356 133149482 -29450448 + G-rich Low_complexity Low_complexity 2 127 0 1986 121 11 4 chrX 133149936 133150237 -29449693 + AluSx SINE Alu 1 303 0 552 217 25 8 chrX 133150377 133150497 -29449433 - MER63A DNA MER1_type -36 174 53 344 331 0 54 chrX 133150704 133150852 -29449078 - MIR3 SINE MIR -49 159 20 911 223 92 13 chrX 133151117 133151346 -29448584 - MIR SINE MIR -15 247 1 24 0 0 0 chrX 133151413 133151437 -29448493 + AT_rich Low_complexity Low_complexity 1 24 0 1330 94 33 0 chrX 133152318 133152498 -29447432 + MER51A LTR ERV1 3 188 -446 2100 84 79 9 chrX 133152507 133152869 -29447061 + LTR7 LTR ERV1 3 450 0 8145 115 7 13 chrX 133152869 133154554 -29445376 + HERVH LTR ERV1 1 1979 -5734 2809 104 7 12 chrX 133154546 133154961 -29444969 + HERVH LTR ERV1 7301 7713 0 * 2140 84 84 4 chrX 133154961 133155326 -29444604 + LTR7 LTR ERV1 1 450 0 1828 94 123 35 chrX 133155326 133155642 -29444288 + MER51A LTR ERV1 282 625 -9 1335 168 25 55 chrX 133155665 133155939 -29443991 + HUERS-P3 LTR ERV1 1 266 -7550 1495 181 27 62 chrX 133155952 133156290 -29443640 + HUERS-P3 LTR ERV1 220 502 -4378 299 228 24 73 chrX 133156455 133156578 -29443352 + HUERS-P3 LTR ERV1 693 809 -7007 409 286 34 5 chrX 133156764 133156966 -29442964 + HUERS-P3 LTR ERV1 1328 1780 -6866 304 328 8 8 chrX 133157256 133157387 -29442543 + HUERS-P3 LTR ERV1 1900 2030 -1058 517 254 111 84 chrX 133157597 133157956 -29441974 + MER51A-int LTR ERV1 1594 2657 -2992 259 164 18 18 chrX 133158467 133158522 -29441408 + MER51A-int LTR ERV1 2640 2694 -5732 3521 303 56 50 chrX 133158649 133158819 -29441111 + MER51A-int LTR ERV1 3419 3586 -3505 2324 90 3 0 chrX 133158819 133159108 -29440822 + AluSp SINE Alu 5 294 -19 3521 303 56 50 chrX 133159108 133162017 -29437913 + MER51A-int LTR ERV1 3586 6159 -932 2087 151 6 0 chrX 133162181 133162505 -29437425 + MER51A-int LTR ERV1 7490 7815 -1 1852 129 93 63 chrX 133162507 133163022 -29436908 + MER51A LTR ERV1 1 634 0 341 356 117 34 chrX 133163053 133163258 -29436672 - L2 LINE L2 0 3272 3051 2417 93 3 0 chrX 133163424 133163735 -29436195 - AluSx SINE Alu 0 312 1 2089 133 0 0 chrX 133164313 133164615 -29435315 - AluSx SINE Alu -10 302 1 269 246 182 18 chrX 133164701 133164811 -29435119 + L2 LINE L2 3186 3313 0 422 308 45 8 chrX 133165585 133165718 -29434212 + MLT1L LTR MaLR 165 302 -313 246 32 0 0 chrX 133165736 133165767 -29434163 + (GA)n Simple_repeat Simple_repeat 2 32 0 548 235 43 94 chrX 133165840 133166074 -29433856 + MLT1L LTR MaLR 365 586 -29 5101 142 52 93 chrX 133166625 133167742 -29432188 - MER11C LTR ERVK 0 1071 1 2651 217 79 52 chrX 133169177 133169784 -29430146 - L1M4 LINE L1 -2096 4050 3410 2435 97 0 0 chrX 133169784 133170095 -29429835 - AluY SINE Alu 0 311 1 2651 217 79 52 chrX 133170095 133170377 -29429553 - L1M4 LINE L1 -2736 3410 3137 987 229 29 21 chrX 133170422 133170701 -29429229 + L1MB8 LINE L1 5889 6169 -9 899 312 121 19 chrX 133171039 133171453 -29428477 - LTR67 LTR ERVL -8 549 94 228 67 0 0 chrX 133171552 133171582 -29428348 + (CA)n Simple_repeat Simple_repeat 2 31 0 429 288 150 19 chrX 133171602 133171762 -29428168 + MER5A DNA MER1_type 9 189 0 592 156 0 33 chrX 133171834 133171956 -29427974 + MER53 DNA DNA 1 118 -71 2458 228 87 38 chrX 133173108 133174040 -29425890 + L1MC5 LINE L1 6770 7747 -214 4242 131 84 165 chrX 133174040 133175263 -29424667 - MER52C LTR ERV1 0 1278 155 390 229 156 8 chrX 133175306 133175428 -29424502 + L1MC5 LINE L1 7752 7891 -70 243 0 0 0 chrX 133175523 133175550 -29424380 + (CA)n Simple_repeat Simple_repeat 2 28 0 1250 236 25 16 chrX 133175656 133175974 -29423956 - L1MB5 LINE L1 0 6174 5854 799 273 27 4 chrX 133176006 133176266 -29423664 - L1MB5 LINE L1 -1571 4575 4310 1987 210 17 17 chrX 133176274 133176740 -29423190 - L1MB7 LINE L1 -16 6870 6405 3459 100 0 0 chrX 133176740 133177189 -29422741 + L1PA12 LINE L1 5720 6168 0 3622 216 23 26 chrX 133177189 133177558 -29422372 - L1MB7 LINE L1 -469 6417 6048 1974 44 0 44 chrX 133177558 133177840 -29422090 + L1PA8 LINE L1 5934 6172 0 3622 216 23 26 chrX 133177840 133178821 -29421109 - L1MB7 LINE L1 -838 6048 5075 5556 80 15 1 chrX 133178831 133179555 -29420375 - L1MA2 LINE L1 0 6304 5571 3736 273 8 13 chrX 133179556 133180498 -29419432 - L1MB7 LINE L1 -5224 1625 688 275 180 0 0 chrX 133180748 133180806 -29419124 - L1 LINE L1 -1767 4379 4322 1994 101 42 7 chrX 133180831 133181117 -29418813 + AluSq SINE Alu 1 296 -17 1733 25 5 0 chrX 133181117 133181321 -29418609 - L1P LINE L1 -1085 5061 4857 1330 39 0 0 chrX 133181321 133181473 -29418457 + L1PA6 LINE L1 6002 6154 0 2304 251 42 30 chrX 133181579 133182205 -29417725 - L1MB7 LINE L1 -945 5903 5286 2107 127 10 3 chrX 133182205 133182504 -29417426 - AluSx SINE Alu -11 301 1 2304 251 42 30 chrX 133182504 133182982 -29416948 - L1MB7 LINE L1 -1562 5286 4815 2184 106 0 7 chrX 133182982 133183274 -29416656 - AluSx SINE Alu -22 290 1 2304 251 42 30 chrX 133183274 133183360 -29416570 - L1MB7 LINE L1 -2033 4815 51 3592 220 14 83 chrX 133183364 133183827 -29416103 - L1MB8 LINE L1 -7 6171 5677 1547 158 0 93 chrX 133183827 133184137 -29415793 + AluJo SINE Alu 11 291 -21 3592 220 14 83 chrX 133184137 133184521 -29415409 - L1MB8 LINE L1 -501 5677 5268 2280 117 3 0 chrX 133184521 133184821 -29415109 - AluSp SINE Alu -12 301 1 3592 220 14 83 chrX 133184821 133185163 -29414767 - L1MB8 LINE L1 -910 5268 4904 289 98 0 0 chrX 133185163 133185204 -29414726 - U2 snRNA snRNA -51 137 97 792 123 0 0 chrX 133185206 133185312 -29414618 - U6 snRNA snRNA -1 106 1 3592 220 14 83 chrX 133185312 133185987 -29413943 - L1MB8 LINE L1 -1275 4903 4387 971 193 0 0 chrX 133185989 133186150 -29413780 - AluJb SINE Alu -23 289 129 1559 92 88 14 chrX 133186150 133186367 -29413563 + AluSq SINE Alu 11 243 -70 2172 237 63 27 chrX 133186367 133186604 -29413326 - L1M4 LINE L1 -1057 5089 4862 2126 121 3 0 chrX 133186604 133186894 -29413036 + AluSx SINE Alu 1 291 -21 2172 237 63 27 chrX 133186894 133186980 -29412950 - L1M4 LINE L1 -1284 4862 4781 2220 111 3 3 chrX 133186980 133187286 -29412644 - AluSg SINE Alu -2 308 3 1823 141 0 78 chrX 133187288 133187608 -29412322 - AluSx SINE Alu -17 295 1 2172 237 63 27 chrX 133187608 133188026 -29411904 - L1M4 LINE L1 -1365 4781 4317 3350 218 46 26 chrX 133188042 133188289 -29411641 - L1MB7 LINE L1 -43 6141 5901 2400 66 3 41 chrX 133188289 133188608 -29411322 - AluSp SINE Alu -6 307 1 3350 218 46 26 chrX 133188608 133190099 -29409831 - L1MB7 LINE L1 -283 5901 4389 467 141 12 0 chrX 133190119 133190204 -29409726 - L1MB8 LINE L1 0 6178 6093 4342 188 38 22 chrX 133190225 133190575 -29409355 - L1MB4 LINE L1 -7 6173 5830 2236 102 7 0 chrX 133190575 133190870 -29409060 - AluSq SINE Alu -16 297 1 4342 188 38 22 chrX 133190870 133191490 -29408440 - L1MB4 LINE L1 -350 5830 5188 553 170 102 48 chrX 133191490 133191637 -29408293 + L1MB5 LINE L1 6012 6166 -8 2194 119 0 0 chrX 133191931 133192225 -29407705 + AluSq SINE Alu 1 294 -19 1853 162 0 3 chrX 133192458 133192748 -29407182 + AluJo SINE Alu 1 289 -23 1743 141 7 31 chrX 133192997 133193126 -29406804 + AluSx SINE Alu 1 132 -180 186 43 0 0 chrX 133193126 133193149 -29406781 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1743 141 7 31 chrX 133193149 133193310 -29406620 + AluSx SINE Alu 132 284 -28 6552 70 1 2 chrX 133194217 133195025 -29404905 + THE1B-int LTR MaLR 774 1580 0 2318 102 87 29 chrX 133195025 133195369 -29404561 + THE1B LTR MaLR 1 364 0 2031 138 119 11 chrX 133195492 133195870 -29404060 - L1MA4 LINE L1 -4 6296 5878 434 250 95 0 chrX 133195870 133195986 -29403944 + MER87 LTR ERV1 415 541 0 3787 133 16 24 chrX 133196068 133197086 -29402844 - L1MA4 LINE L1 -436 5864 4855 203 273 40 61 chrX 133197134 133197233 -29402697 + MIR SINE MIR 160 256 -6 1014 251 25 12 chrX 133197384 133197627 -29402303 + MER87 LTR ERV1 168 413 -128 2109 108 0 17 chrX 133197647 133198006 -29401924 + AluSx SINE Alu 1 354 0 565 248 16 8 chrX 133198020 133198149 -29401781 + MER87 LTR ERV1 412 541 0 734 162 0 34 chrX 133198290 133198407 -29401523 - FRAM SINE Alu -23 153 41 200 207 23 92 chrX 133198588 133198675 -29401255 + MIR SINE MIR 116 196 -66 22 0 0 0 chrX 133198730 133198752 -29401178 + AT_rich Low_complexity Low_complexity 1 22 0 2835 82 0 11 chrX 133199242 133199608 -29400322 - THE1C LTR MaLR -13 362 1 184 381 48 8 chrX 133199642 133199768 -29400162 - L2 LINE L2 -5 3267 3137 297 265 113 13 chrX 133200064 133200215 -29399715 + MER103 DNA DNA 1 166 0 4275 236 40 48 chrX 133200263 133200383 -29399547 - L1M4 LINE L1 -1116 5030 4911 803 159 48 8 chrX 133200383 133200509 -29399421 - FLAM_A SINE Alu -2 131 1 4275 236 40 48 chrX 133200509 133202077 -29397853 - L1M4 LINE L1 -1235 4911 3356 610 103 0 0 chrX 133202078 133202165 -29397765 + MSTC LTR MaLR 3 89 -339 550 195 39 19 chrX 133202165 133202319 -29397611 - L1M4 LINE L1 -869 5277 5121 1251 233 8 40 chrX 133202326 133202802 -29397128 - L1M4 LINE L1 -2786 3360 2900 1873 106 0 0 chrX 133202935 133203181 -29396749 + AluSx SINE Alu 1 246 -66 722 299 146 15 chrX 133203639 133204137 -29395793 + L2 LINE L2 2751 3313 0 257 284 49 20 chrX 133204591 133204693 -29395237 + L2 LINE L2 2761 2865 -449 431 319 47 54 chrX 133204748 133204810 -29395120 - L1M4 LINE L1 -855 5291 5230 2378 86 3 0 chrX 133204810 133205113 -29394817 - AluSx SINE Alu -8 304 1 431 319 47 54 chrX 133205113 133205329 -29394601 - L1M4 LINE L1 -916 5230 5015 568 261 39 17 chrX 133205368 133205548 -29394382 - MIR SINE MIR -2 260 77 232 229 181 0 chrX 133205579 133205662 -29394268 + MIR SINE MIR 165 262 0 248 0 31 0 chrX 133205884 133205916 -29394014 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 59 29 0 chrX 133206660 133206694 -29393236 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2046 136 0 0 chrX 133206696 133206982 -29392948 - AluSx SINE Alu -26 286 1 542 267 19 6 chrX 133207331 133207492 -29392438 + MER58B DNA MER1_type 179 341 0 3048 148 50 5 chrX 133208137 133208719 -29391211 + L1MB4 LINE L1 5552 6159 -21 2179 131 3 0 chrX 133208721 133209019 -29390911 - AluSx SINE Alu -13 299 1 2295 117 0 7 chrX 133209053 133209361 -29390569 + AluSx SINE Alu 1 306 -6 281 291 47 0 chrX 133209398 133209484 -29390446 + MIR SINE MIR 159 248 -14 * 359 226 17 104 chrX 133209475 133209590 -29390340 + L3 LINE CR1 1362 1466 -111 358 248 188 15 chrX 133209601 133209734 -29390196 - MER5A DNA MER1_type -6 183 28 963 156 82 3 chrX 133209808 133210028 -29389902 + MER33 DNA MER1_type 1 216 -88 264 59 0 0 chrX 133210033 133210067 -29389863 + (TA)n Simple_repeat Simple_repeat 2 35 0 1922 122 4 14 chrX 133210069 133210347 -29389583 - AluSx SINE Alu -25 287 13 1420 167 4 16 chrX 133210363 133210608 -29389322 + AluJo SINE Alu 58 299 -13 243 0 0 0 chrX 133210901 133210928 -29389002 + (TG)n Simple_repeat Simple_repeat 2 28 0 2129 108 25 0 chrX 133210932 133211218 -29388712 - AluSx SINE Alu -19 293 1 263 250 136 23 chrX 133211645 133211733 -29388197 + L3 LINE CR1 969 1066 -511 1727 223 10 30 chrX 133211744 133212139 -29387791 + MLT1E LTR MaLR 207 593 0 870 226 97 18 chrX 133212139 133212483 -29387447 - L1ME LINE L1 -615 5549 5177 2239 85 0 3 chrX 133212503 133212786 -29387144 - AluSx SINE Alu -30 282 1 1266 141 68 5 chrX 133212798 133213004 -29386926 - AluJb SINE Alu -55 257 39 416 250 337 5 chrX 133213022 133213218 -29386712 + MIR SINE MIR 2 262 0 2233 105 3 10 chrX 133213282 133213596 -29386334 + AluSx SINE Alu 1 312 0 258 179 0 48 chrX 133214118 133214202 -29385728 + CT-rich Low_complexity Low_complexity 2 81 0 1910 139 19 10 chrX 133214209 133214518 -29385412 - AluSx SINE Alu 0 312 1 245 211 35 0 chrX 133215132 133215209 -29384721 + (CCGGG)n Simple_repeat Simple_repeat 1 79 0 204 345 79 73 chrX 133216123 133216451 -29383479 + L2 LINE L2 2857 3186 -86 200 218 73 18 chrX 133217295 133217350 -29382580 + L3 LINE CR1 625 682 -895 500 207 81 75 chrX 133217356 133217530 -29382400 + L3 LINE CR1 836 1010 -567 524 287 111 9 chrX 133217530 133217746 -29382184 + L3 LINE CR1 1171 1408 -169 930 210 60 81 chrX 133218903 133219151 -29380779 - MIR SINE MIR -5 257 15 674 187 200 13 chrX 133219296 133219451 -29380479 + MER5A DNA MER1_type 2 185 -4 1225 199 46 0 chrX 133222843 133223125 -29376805 - L1M4 LINE L1 -2354 3792 3498 1597 181 59 12 chrX 133223159 133223497 -29376433 - MLT1A1 LTR MaLR -11 354 1 2231 204 62 42 chrX 133223511 133224299 -29375631 - L1M4 LINE L1 -2686 3460 2657 753 274 56 17 chrX 133225891 133226125 -29373805 + MIR SINE MIR 20 262 0 1263 250 151 0 chrX 133226141 133226553 -29373377 + Charlie2 DNA MER1_type 1 474 -2308 6184 94 17 2 chrX 133227049 133228325 -29371605 - L1PA16 LINE L1 -3 6163 4873 886 174 43 6 chrX 133228506 133228667 -29371263 + MER5A DNA MER1_type 17 183 -6 374 341 180 18 chrX 133228684 133229229 -29370701 + L2 LINE L2 1565 2197 -1117 2607 41 0 22 chrX 133229229 133229546 -29370384 - AluY SINE Alu -1 310 1 423 243 38 43 chrX 133229578 133229763 -29370167 - MLT1J LTR MaLR 0 511 328 1279 182 18 0 chrX 133229771 133229991 -29369939 + MER58A DNA MER1_type 1 224 0 1874 153 60 3 chrX 133230101 133230486 -29369444 - MER95 LTR ERV -16 415 9 569 268 135 46 chrX 133230519 133230925 -29369005 - L1MC5 LINE L1 -47 7952 7584 207 0 0 0 chrX 133230925 133230948 -29368982 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 569 268 135 46 chrX 133230948 133231345 -29368585 - L1MC5 LINE L1 -415 7584 7111 2586 68 0 6 chrX 133231351 133231662 -29368268 - AluSx SINE Alu -3 309 1 244 279 25 25 chrX 133231740 133231819 -29368111 - MLT1J1 LTR MaLR -289 157 79 195 348 135 0 chrX 133232133 133232222 -29367708 + L2 LINE L2 2922 3022 -250 1353 211 95 16 chrX 133232226 133232606 -29367324 + MER96B DNA MER1_type? 1 410 -7 300 277 46 41 chrX 133233074 133233269 -29366661 - L1ME4a LINE L1 -3 6118 5923 325 253 40 50 chrX 133233355 133233454 -29366476 - L1ME4a LINE L1 -1993 5815 5718 2313 117 0 0 chrX 133234204 133234512 -29365418 + AluSx SINE Alu 1 308 -4 376 211 90 8 chrX 133234553 133234686 -29365244 - L1ME4a LINE L1 -16 6105 5962 22 35 0 0 chrX 133234726 133234755 -29365175 + AT_rich Low_complexity Low_complexity 1 29 0 570 282 50 23 chrX 133234853 133235154 -29364776 - L1MC4 LINE L1 -15 8027 7719 544 167 167 0 chrX 133235210 133235324 -29364606 - FLAM_C SINE Alu 0 133 1 886 249 11 41 chrX 133235405 133235743 -29364187 - L1MC5 LINE L1 -547 7495 7205 3542 116 19 15 chrX 133235904 133236500 -29363430 - L1MB2 LINE L1 -2 6169 5572 1303 254 42 66 chrX 133236563 133237090 -29362840 - Charlie8 DNA MER1_type -1900 517 4 1035 57 0 0 chrX 133237235 133237410 -29362520 - AluSc SINE Alu 0 333 159 449 16 78 0 chrX 133237426 133237490 -29362440 - MER41B LTR ERV1 -88 547 479 368 244 141 33 chrX 133237612 133237882 -29362048 - L1ME4a LINE L1 -12 6109 5811 4679 149 26 20 chrX 133238176 133238852 -29361078 - L1MB7 LINE L1 -15 6169 5488 1779 175 6 19 chrX 133238852 133239166 -29360764 - AluJb SINE Alu -2 310 1 4679 149 26 20 chrX 133239166 133239563 -29360367 - L1MB7 LINE L1 -696 5488 5095 619 289 159 10 chrX 133241522 133241723 -29358207 - MIR SINE MIR 0 262 32 846 301 115 40 chrX 133241762 133241916 -29358014 - L2 LINE L2 -485 2829 2688 556 246 78 18 chrX 133241916 133242083 -29357847 + MER5B DNA MER1_type 1 177 -1 846 301 115 40 chrX 133242083 133242104 -29357826 - L2 LINE L2 -626 2688 2670 1044 195 11 5 chrX 133242104 133242289 -29357641 - MER5A DNA MER1_type -3 186 1 846 301 115 40 chrX 133242289 133242739 -29357191 - L2 LINE L2 -644 2670 2156 21 0 0 0 chrX 133242934 133242955 -29356975 + AT_rich Low_complexity Low_complexity 1 21 0 1980 87 8 0 chrX 133242955 133243208 -29356722 - AluSg SINE Alu -51 259 5 377 249 88 44 chrX 133243244 133243425 -29356505 - L2 LINE L2 -1232 2082 1894 356 241 78 43 chrX 133243562 133243678 -29356252 - L2 LINE L2 -36 3277 3158 794 270 60 16 chrX 133243752 133244000 -29355930 - MIR SINE MIR -2 260 2 820 122 92 55 chrX 133244270 133244434 -29355496 + AluJo SINE Alu 126 295 -17 1320 307 74 14 chrX 133244481 133245155 -29354775 - L2 LINE L2 -1 3312 2584 212 364 0 0 chrX 133245519 133245574 -29354356 + L2 LINE L2 3246 3300 -13 311 258 58 17 chrX 133245709 133245829 -29354101 - MIR SINE MIR -47 215 91 * 596 260 76 45 chrX 133245820 133245950 -29353980 + L2 LINE L2 3081 3222 -91 1846 212 112 28 chrX 133245950 133246450 -29353480 - MLT1F LTR MaLR 0 542 1 596 260 76 45 chrX 133246450 133246542 -29353388 + L2 LINE L2 3222 3310 -3 207 0 0 0 chrX 133247577 133247600 -29352330 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2573 51 0 0 chrX 133247603 133247895 -29352035 - AluY SINE Alu -19 292 1 220 196 59 0 chrX 133248836 133248887 -29351043 + L2 LINE L2 3256 3309 -4 222 353 98 71 chrX 133248898 133249164 -29350766 - L2 LINE L2 -1 3271 2999 4156 119 36 18 chrX 133249189 133249846 -29350084 - L1MC1 LINE L1 -232 6101 5433 2071 89 4 11 chrX 133249963 133250233 -29349697 - AluSq SINE Alu -45 268 1 358 325 106 0 chrX 133250430 133250553 -29349377 + L2 LINE L2 3137 3272 0 1157 110 37 0 chrX 133250650 133250813 -29349117 + AluSg/x SINE Alu 133 301 -11 599 214 218 41 chrX 133250887 133251021 -29348909 + L2 LINE L2 2199 2308 -1006 752 179 0 0 chrX 133251021 133251144 -29348786 + FLAM_A SINE Alu 4 126 -7 599 214 218 41 chrX 133251144 133251280 -29348650 + L2 LINE L2 2308 2517 -797 733 193 104 24 chrX 133251451 133251663 -29348267 - MIR SINE MIR -26 236 8 276 30 0 0 chrX 133252392 133252425 -29347505 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 504 48 0 0 chrX 133252424 133252487 -29347443 + (TA)n Simple_repeat Simple_repeat 2 64 0 2403 86 0 13 chrX 133252487 133252790 -29347140 - AluSx SINE Alu -13 299 1 270 0 0 0 chrX 133254083 133254113 -29345817 + (A)n Simple_repeat Simple_repeat 1 30 0 2162 97 3 7 chrX 133254296 133254585 -29345345 + AluSg SINE Alu 1 288 -22 701 266 88 25 chrX 133254587 133254861 -29345069 + L1ME4a LINE L1 5598 5888 -233 326 217 179 9 chrX 133254872 133254978 -29344952 + L1ME4a LINE L1 5998 6121 0 1562 179 54 7 chrX 133255701 133255980 -29343950 + AluJo SINE Alu 1 292 -20 2133 115 0 0 chrX 133256269 133256582 -29343348 - AluSg SINE Alu 0 313 1 274 305 66 13 chrX 133256877 133257028 -29342902 - MIR SINE MIR -6 256 98 578 70 50 10 chrX 133257195 133257295 -29342635 - L1MA7 LINE L1 0 6291 6188 1531 166 92 0 chrX 133258951 133259246 -29340684 + MER33 DNA MER1_type 3 324 0 694 183 15 124 chrX 133262187 133262316 -29337614 - MER5A DNA MER1_type -9 180 79 2366 97 3 3 chrX 133262316 133262626 -29337304 - AluSq SINE Alu -3 310 1 694 183 15 124 chrX 133262626 133262698 -29337232 - MER5A DNA MER1_type -110 79 1 275 225 34 34 chrX 133262694 133262706 -29337224 + MIR SINE MIR 107 118 -144 * 868 216 11 0 chrX 133262706 133262882 -29337048 - MER5B DNA MER1_type 0 178 1 275 225 34 34 chrX 133262882 133262958 -29336972 + MIR SINE MIR 117 195 -67 7345 44 4 9 chrX 133262962 133264038 -29335892 + L1PA7 LINE L1 5077 6153 -1 310 224 137 81 chrX 133264151 133264211 -29335719 + MER5A DNA MER1_type 10 65 -124 2353 113 0 0 chrX 133264211 133264521 -29335409 + AluSx SINE Alu 1 310 -2 310 224 137 81 chrX 133264521 133264621 -29335309 + MER5A DNA MER1_type 65 179 -10 2199 178 111 17 chrX 133264648 133264914 -29335016 - MLT1D LTR MaLR 0 505 265 2381 81 0 7 chrX 133264914 133265209 -29334721 - AluSg SINE Alu -17 293 1 2199 178 111 17 chrX 133265209 133265403 -29334527 - MLT1D LTR MaLR -240 265 2 399 248 16 16 chrX 133265619 133265740 -29334190 + L1MC4a LINE L1 5761 5881 -1927 25 0 0 0 chrX 133265927 133265952 -29333978 + AT_rich Low_complexity Low_complexity 1 25 0 2324 79 0 0 chrX 133265952 133266251 -29333679 - AluSx SINE Alu 0 304 6 265 164 41 25 chrX 133266418 133266426 -29333504 + (TA)n Simple_repeat Simple_repeat 2 8 -117 1982 113 21 128 chrX 133266426 133266815 -29333115 - MER7A DNA MER2_type -1 345 1 265 164 41 25 chrX 133266815 133266928 -29333002 + (TA)n Simple_repeat Simple_repeat 8 125 0 282 106 0 0 chrX 133266953 133267000 -29332930 + (GA)n Simple_repeat Simple_repeat 1 47 0 633 276 24 19 chrX 133267206 133267416 -29332514 - MIR SINE MIR -6 256 46 518 254 32 43 chrX 133267851 133268079 -29331851 - MIR SINE MIR -14 248 18 2473 144 51 55 chrX 133268104 133268611 -29331319 + MLT1D LTR MaLR 1 505 0 25 31 0 0 chrX 133269396 133269428 -29330502 + AT_rich Low_complexity Low_complexity 1 32 0 375 272 43 68 chrX 133269441 133269603 -29330327 - MIR SINE MIR -77 185 28 1699 190 0 3 chrX 133271438 133271733 -29328197 - AluJo SINE Alu -14 298 5 255 290 56 0 chrX 133272047 133272154 -29327776 + L2 LINE L2 2626 2738 -576 250 281 16 0 chrX 133272211 133272275 -29327655 + L2 LINE L2 3191 3255 -17 318 198 0 49 chrX 133272764 133272845 -29327085 + L2 LINE L2 3154 3230 -42 28 29 0 0 chrX 133272893 133272928 -29327002 + AT_rich Low_complexity Low_complexity 1 35 0 685 269 96 42 chrX 133272952 133273212 -29326718 + L2 LINE L2 2558 2831 -483 1226 216 13 0 chrX 133273224 133273460 -29326470 + MIR SINE MIR 9 247 -15 332 179 0 0 chrX 133273483 133273550 -29326380 + L2 LINE L2 2845 2911 -402 1240 107 0 6 chrX 133273616 133273785 -29326145 + AluSc SINE Alu 142 309 0 228 381 71 11 chrX 133274305 133274586 -29325344 - L2 LINE L2 -646 2668 2371 181 209 0 23 chrX 133275747 133275790 -29324140 + L2 LINE L2 3179 3220 -93 325 187 37 155 chrX 133275899 133275955 -29323975 + MIR SINE MIR 96 157 -105 2262 130 0 9 chrX 133275955 133276270 -29323660 - AluSx SINE Alu 0 312 1 906 130 8 0 chrX 133276276 133276407 -29323523 - FLAM_C SINE Alu 0 133 2 325 187 37 155 chrX 133276407 133276530 -29323400 + MIR SINE MIR 162 260 -2 395 284 76 10 chrX 133277758 133277918 -29322012 - MIR SINE MIR -54 154 2 411 269 29 0 chrX 133278053 133278157 -29321773 - MIR SINE MIR -32 230 124 2119 101 0 14 chrX 133278495 133278806 -29321124 - AluSq SINE Alu 0 307 1 304 269 74 9 chrX 133278808 133278916 -29321014 + L2 LINE L2 3153 3267 -5 2468 87 0 10 chrX 133280230 133280541 -29319389 + AluSx SINE Alu 1 308 -4 304 177 215 15 chrX 133280545 133280675 -29319255 - L1ME4a LINE L1 0 6121 5966 746 263 109 35 chrX 133280682 133280976 -29318954 - L1ME4a LINE L1 -367 5754 5413 2908 6 0 3 chrX 133280976 133281288 -29318642 - AluYa5 SINE Alu 0 311 1 746 263 109 35 chrX 133281288 133281460 -29318470 - L1ME4a LINE L1 -708 5413 5255 1666 123 105 77 chrX 133281493 133281525 -29318405 - MER46B DNA MER2_type -2495 236 206 2152 131 3 0 chrX 133281525 133281831 -29318099 + AluSx SINE Alu 1 307 -5 1666 123 105 77 chrX 133281831 133282149 -29317781 - MER46B DNA MER2_type -2525 206 1 303 217 100 33 chrX 133282152 133282272 -29317658 - L1MC4 LINE L1 -980 7062 6935 483 194 10 29 chrX 133282283 133282386 -29317544 - L1MC4 LINE L1 0 8042 7942 465 207 0 0 chrX 133282397 133282484 -29317446 - FRAM SINE Alu -23 153 67 1609 148 37 34 chrX 133282792 133283090 -29316840 - AluJo SINE Alu -10 302 4 1164 150 150 47 chrX 133283136 133283291 -29316639 - AluJo SINE Alu 0 302 164 198 0 0 0 chrX 133283291 133283313 -29316617 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1164 150 150 47 chrX 133283313 133283431 -29316499 - AluJo SINE Alu -138 164 1 558 321 75 55 chrX 133283525 133284403 -29315527 - L1M4 LINE L1 -3129 3017 2122 2062 135 0 0 chrX 133285538 133285820 -29314110 - AluSx SINE Alu -30 282 1 723 135 0 9 chrX 133286815 133286926 -29313004 + MLT1B LTR MaLR 1 110 -280 2213 63 0 15 chrX 133287089 133287359 -29312571 - AluY SINE Alu -45 266 1 204 179 0 0 chrX 133287496 133287535 -29312395 + A-rich Low_complexity Low_complexity 1 39 0 2648 135 6 47 chrX 133288525 133288835 -29311095 - L1MB5 LINE L1 -8 6166 5880 2321 105 3 10 chrX 133288835 133289149 -29310781 - AluSx SINE Alu 0 312 1 2648 135 6 47 chrX 133289149 133289304 -29310626 - L1MB5 LINE L1 -294 5880 5720 564 269 137 19 chrX 133289636 133289848 -29310082 - LTR16B LTR ERVL -41 423 187 1124 163 93 45 chrX 133290011 133290209 -29309721 - MLT2C1 LTR ERVL -65 399 212 1466 124 169 0 chrX 133290209 133290499 -29309431 - MER44D DNA MER2_type 0 609 1 1124 163 93 45 chrX 133290499 133290587 -29309343 - MLT2C1 LTR ERVL -252 212 1 438 208 0 59 chrX 133290588 133290689 -29309241 - HERV16 LTR ERVL -2736 2260 2166 2547 302 73 34 chrX 133290691 133292622 -29307308 - HERV16 LTR ERVL -2778 2218 116 681 222 108 21 chrX 133292701 133292895 -29307035 - LTR16B LTR ERVL -2 462 252 361 154 39 77 chrX 133292914 133293018 -29306912 - L1MA7 LINE L1 0 6291 6192 370 321 18 0 chrX 133293566 133293675 -29306255 - HERV16 LTR ERVL -3428 1568 1458 598 260 67 19 chrX 133294117 133294325 -29305605 + LTR40b LTR ERVL 160 377 -85 322 259 58 143 chrX 133294405 133294629 -29305301 - LTR16B LTR ERVL -242 222 18 186 71 0 0 chrX 133294894 133294922 -29305008 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 3969 72 0 19 chrX 133295728 133296240 -29303690 - L1PB1 LINE L1 -2 6149 5648 463 319 126 51 chrX 133296486 133296979 -29302951 - L1ME4a LINE L1 -199 5922 5393 2424 87 3 0 chrX 133297012 133297324 -29302606 - AluSq SINE Alu 0 313 1 799 229 112 0 chrX 133297649 133297837 -29302093 - MER3 DNA MER1_type 0 209 1 202 346 19 28 chrX 133297919 133298026 -29301904 + L2 LINE L2 2990 3095 -177 2205 97 52 30 chrX 133298028 133298358 -29301572 + MER1B DNA MER1_type 1 337 -2 2017 121 16 26 chrX 133298960 133299266 -29300664 - AluSx SINE Alu -9 303 1 196 274 57 70 chrX 133299306 133299461 -29300469 - MIR3 SINE MIR -77 131 4 297 333 14 22 chrX 133300303 133300441 -29299489 - MER5A DNA MER1_type -45 144 8 394 264 93 50 chrX 133301399 133301539 -29298391 + MIR3 SINE MIR 11 156 -52 225 256 0 0 chrX 133301645 133301688 -29298242 + L2 LINE L2 3214 3256 -16 775 213 50 6 chrX 133302825 133302985 -29296945 + MER5B DNA MER1_type 6 172 -6 922 183 5 48 chrX 133303032 133303218 -29296712 + MER5B DNA MER1_type 1 178 0 2624 48 0 6 chrX 133303224 133303535 -29296395 + AluY SINE Alu 1 309 -2 215 259 0 17 chrX 133303549 133303607 -29296323 + MER5B DNA MER1_type 2 58 -120 1221 195 38 157 chrX 133303644 133304263 -29295667 - L2 LINE L2 0 3313 2772 2338 84 12 47 chrX 133304402 133304746 -29295184 - LTR12 LTR ERV1 -382 332 1 2703 120 46 0 chrX 133305586 133305979 -29293951 - LTR57 LTR ERVL 0 411 1 293 245 102 30 chrX 133305979 133306145 -29293785 + MIR3 SINE MIR 3 186 -22 21 0 0 0 chrX 133306156 133306177 -29293753 + AT_rich Low_complexity Low_complexity 1 21 0 286 223 80 26 chrX 133306351 133306480 -29293450 + MIR SINE MIR 18 150 -58 2382 91 0 3 chrX 133306760 133307068 -29292862 - AluSc SINE Alu -2 307 1 1783 260 111 50 chrX 133307342 133307799 -29292131 + L2 LINE L2 2237 2665 -648 2455 67 0 32 chrX 133307799 133308113 -29291817 - AluSp SINE Alu -5 308 5 1783 260 111 50 chrX 133308113 133308490 -29291440 + L2 LINE L2 2665 3136 -177 212 163 23 0 chrX 133308484 133308527 -29291403 - L2 LINE L2 0 3313 3270 * 1807 140 36 19 chrX 133308534 133309032 -29290898 - AluSx SINE Alu 0 503 1 1179 256 106 17 chrX 133309032 133309523 -29290407 - L2 LINE L2 -36 3277 2751 630 227 0 38 chrX 133309572 133309704 -29290226 + L2 LINE L2 3183 3309 -4 505 227 133 8 chrX 133309770 133309898 -29290032 + MIR3 SINE MIR 20 163 -45 1167 74 14 0 chrX 133309898 133310046 -29289884 - L1PB1 LINE L1 0 6151 6002 575 119 20 30 chrX 133311126 133311227 -29288703 - L1PA16 LINE L1 -1 6165 6066 560 37 0 37 chrX 133311229 133311298 -29288632 + L1P4 LINE L1 5411 5478 -687 3563 109 2 40 chrX 133311298 133311478 -29288452 - L1MA3 LINE L1 0 7724 7539 2330 105 0 7 chrX 133311478 133311782 -29288148 - AluSx SINE Alu -10 302 1 3563 109 2 40 chrX 133311782 133312172 -29287758 - L1MA3 LINE L1 -185 7539 7176 560 37 0 37 chrX 133312172 133312183 -29287747 + L1P4 LINE L1 5478 5488 -677 2026 113 35 0 chrX 133312202 133312484 -29287446 + AluSx SINE Alu 1 292 -20 6146 101 0 9 chrX 133312496 133313359 -29286571 - L1PA15 LINE L1 0 6165 5311 13995 159 18 5 chrX 133313359 133316357 -29283573 - L1MA3 LINE L1 -520 7204 4166 7855 182 29 12 chrX 133316457 133317894 -29282036 - L1MA3 LINE L1 -6088 1477 17 22 0 0 0 chrX 133317949 133317971 -29281959 + AT_rich Low_complexity Low_complexity 1 22 0 2329 76 0 0 chrX 133318505 133318782 -29281148 + AluSc SINE Alu 1 277 -32 240 35 0 0 chrX 133318784 133318813 -29281117 + (TAA)n Simple_repeat Simple_repeat 2 30 0 425 128 26 0 chrX 133320589 133320667 -29279263 + CT-rich Low_complexity Low_complexity 1 80 0 2544 57 0 0 chrX 133320667 133320966 -29278964 - AluY SINE Alu -12 299 1 2075 137 0 3 chrX 133321588 133321881 -29278049 - AluSx SINE Alu -19 293 2 198 0 0 0 chrX 133322638 133322660 -29277270 + (TTA)n Simple_repeat Simple_repeat 3 24 0 45231 40 2 0 chrX 133322660 133328787 -29271143 - L1PA4 LINE L1 -18 6137 3 2834 127 28 21 chrX 133330450 133330875 -29269055 + MSTA LTR MaLR 1 428 0 1727 155 10 7 chrX 133333002 133333292 -29266638 - AluJb SINE Alu -21 291 1 1558 113 0 19 chrX 133335506 133335719 -29264211 - AluSg/x SINE Alu -18 294 86 1885 160 96 3 chrX 133336354 133336697 -29263233 - MSTA LTR MaLR 0 428 54 383 203 13 0 chrX 133338160 133338239 -29261691 + MER116 DNA Mariner 1 80 0 2729 123 17 110 chrX 133338303 133338841 -29261089 + LTR45B LTR ERV1 2 489 0 448 248 9 9 chrX 133339044 133339153 -29260777 + MARNA DNA Mariner 148 256 -330 2218 100 0 0 chrX 133339180 133339461 -29260469 + AluSx SINE Alu 5 285 -27 892 168 0 0 chrX 133341349 133341474 -29258456 + FLAM_C SINE Alu 1 125 -8 519 17 0 0 chrX 133341480 133341540 -29258390 + (TAAAA)n Simple_repeat Simple_repeat 2 61 0 1772 195 0 3 chrX 133344094 133344396 -29255534 - AluJo SINE Alu -11 301 1 553 227 49 6 chrX 133344611 133344774 -29255156 - L1M4 LINE L1 -1799 4347 4178 1045 139 15 5 chrX 133347059 133347261 -29252669 - L1P LINE L1 -827 5319 5116 5575 78 19 41 chrX 133347294 133348171 -29251759 + L1PA13 LINE L1 5306 6163 0 2519 53 3 7 chrX 133349948 133350252 -29249678 - AluSq SINE Alu -8 305 3 2736 127 14 28 chrX 133351138 133351570 -29248360 - MSTB LTR MaLR 0 426 1 1456 228 58 22 chrX 133352118 133352534 -29247396 - LTR47B LTR ERVL 0 443 13 7723 25 0 0 chrX 133352536 133353819 -29246111 + L1PA3 LINE L1 4873 6155 0 2981 65 0 5 chrX 133353822 133354209 -29245721 + L1PA7 LINE L1 5769 6153 -1 186 43 0 0 chrX 133354248 133354271 -29245659 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 414 198 31 0 chrX 133354721 133354817 -29245113 - L1MB4 LINE L1 -22 6158 6060 2162 123 0 3 chrX 133355985 133356285 -29243645 + AluSx SINE Alu 5 303 -9 270 0 0 0 chrX 133356382 133356412 -29243518 + (TA)n Simple_repeat Simple_repeat 2 31 0 266 98 20 59 chrX 133356418 133356469 -29243461 - L2 LINE L2 -4 3309 3261 362 331 108 25 chrX 133356540 133356853 -29243077 - L2 LINE L2 -193 3079 2720 3013 182 25 7 chrX 133357976 133358530 -29241400 + MLT1F1 LTR MaLR 1 564 -3 369 331 138 24 chrX 133358595 133359088 -29240842 + L1 LINE L1 2442 2990 -3156 663 314 47 65 chrX 133359126 133359508 -29240422 + L2 LINE L2 2260 2634 -680 770 265 46 9 chrX 133359543 133359762 -29240168 + MIR SINE MIR 36 262 0 745 357 80 34 chrX 133359810 133359854 -29240076 + L2 LINE L2 2695 2736 -536 2071 104 38 0 chrX 133359854 133360143 -29239787 - AluSg SINE Alu -10 300 1 745 357 80 34 chrX 133360143 133360660 -29239270 + L2 LINE L2 2736 3272 0 259 222 0 0 chrX 133361644 133361689 -29238241 + L2 LINE L2 3216 3260 -12 3478 72 28 19 chrX 133363087 133363615 -29236315 + L1MA1 LINE L1 5770 6302 0 221 0 35 0 chrX 133365037 133365066 -29234864 + (TAA)n Simple_repeat Simple_repeat 2 31 0 243 57 0 0 chrX 133365066 133365090 -29234840 + (CAT)n Simple_repeat Simple_repeat 1 27 -8 2385 101 55 0 chrX 133365090 133365435 -29234495 + THE1B LTR MaLR 1 364 0 243 57 0 0 chrX 133365435 133365445 -29234485 + (CAT)n Simple_repeat Simple_repeat 26 35 0 322 288 55 106 chrX 133365446 133366022 -29233908 + L2 LINE L2 2474 3072 -200 218 244 0 0 chrX 133366180 133366225 -29233705 + MIR SINE MIR 208 252 -10 351 44 0 0 chrX 133366230 133366275 -29233655 + (CAT)n Simple_repeat Simple_repeat 3 47 0 2831 239 43 23 chrX 133366630 133367472 -29232458 - L1ME1 LINE L1 -5 6161 5303 572 184 191 8 chrX 133368696 133368839 -29231091 - MER5A DNA MER1_type 0 189 8 1091 171 68 0 chrX 133370021 133370226 -29229704 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 133371892 133371912 -29228018 + (A)n Simple_repeat Simple_repeat 1 20 0 21 82 0 0 chrX 133372672 133372721 -29227209 + AT_rich Low_complexity Low_complexity 1 49 0 1790 146 10 27 chrX 133373454 133373749 -29226181 - AluSx SINE Alu -15 297 8 446 314 12 6 chrX 133373818 133373987 -29225943 + CT-rich Low_complexity Low_complexity 3 172 0 243 170 0 0 chrX 133374024 133374071 -29225859 + CT-rich Low_complexity Low_complexity 2 48 0 198 191 0 0 chrX 133374235 133374277 -29225653 + CT-rich Low_complexity Low_complexity 3 44 0 186 143 0 0 chrX 133374392 133374427 -29225503 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 324 178 40 0 chrX 133374502 133374603 -29225327 + CT-rich Low_complexity Low_complexity 2 106 0 2042 89 3 50 chrX 133374682 133374984 -29224946 - AluSc SINE Alu -21 288 1 284 264 22 11 chrX 133375280 133375371 -29224559 + CT-rich Low_complexity Low_complexity 1 92 0 198 233 0 0 chrX 133375413 133375473 -29224457 + CT-rich Low_complexity Low_complexity 1 60 0 2263 88 0 20 chrX 133375548 133375842 -29224088 - AluSq SINE Alu -9 304 17 227 276 0 0 chrX 133375893 133375951 -29223979 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 224 163 23 0 chrX 133376100 133376143 -29223787 + CT-rich Low_complexity Low_complexity 4 47 0 2074 107 14 10 chrX 133376185 133376474 -29223456 - AluJb SINE Alu -22 290 1 227 170 0 19 chrX 133376590 133376643 -29223287 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 200 111 28 0 chrX 133376749 133376785 -29223145 + CT-rich Low_complexity Low_complexity 4 40 0 351 262 33 49 chrX 133376874 133377106 -29222824 + CT-rich Low_complexity Low_complexity 1 228 0 305 206 11 0 chrX 133377127 133377219 -29222711 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 302 240 11 22 chrX 133377375 133377554 -29222376 + CT-rich Low_complexity Low_complexity 1 177 0 1075 192 65 37 chrX 133377910 133378155 -29221775 - AluJo SINE Alu -12 300 49 180 200 0 0 chrX 133378207 133378247 -29221683 + CT-rich Low_complexity Low_complexity 2 41 0 212 242 12 55 chrX 133378362 133378527 -29221403 + CT-rich Low_complexity Low_complexity 3 160 0 2382 65 0 10 chrX 133378618 133379007 -29220923 - AluY SINE Alu 0 311 1 203 255 0 53 chrX 133379007 133379055 -29220875 + T-rich Low_complexity Low_complexity 5 180 0 253 183 14 14 chrX 133379079 133379150 -29220780 + CT-rich Low_complexity Low_complexity 4 74 0 484 270 0 38 chrX 133379218 133379403 -29220527 + CT-rich Low_complexity Low_complexity 2 179 0 973 88 1 44 chrX 133379520 133379831 -29220099 + (TTCC)n Simple_repeat Simple_repeat 1 475 0 912 108 0 32 chrX 133379831 133380017 -29219913 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 206 227 0 15 chrX 133380265 133380331 -29219599 + CT-rich Low_complexity Low_complexity 3 67 0 1789 130 91 4 chrX 133380414 133380690 -29219240 - AluSg SINE Alu -6 304 5 198 238 0 41 chrX 133380699 133380821 -29219109 + CT-rich Low_complexity Low_complexity 1 117 0 2483 84 0 0 chrX 133380922 133381233 -29218697 - AluSx SINE Alu -1 311 1 247 132 0 0 chrX 133381411 133381449 -29218481 + Alu SINE Alu 1 38 -264 215 295 0 0 chrX 133381460 133381521 -29218409 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 219 139 0 0 chrX 133381704 133381740 -29218190 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 641 24 12 0 chrX 133381894 133381977 -29217953 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 410 138 0 0 chrX 133382071 133382136 -29217794 - AluJ/FRAM SINE Alu -18 294 230 244 347 0 35 chrX 133382211 133382384 -29217546 + CT-rich Low_complexity Low_complexity 2 168 0 198 71 0 0 chrX 133382424 133382452 -29217478 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 254 256 47 0 chrX 133382559 133382645 -29217285 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 233 257 27 14 chrX 133382795 133382869 -29217061 + CT-rich Low_complexity Low_complexity 3 77 0 204 180 0 40 chrX 133382985 133383035 -29216895 + CT-rich Low_complexity Low_complexity 3 50 0 231 308 0 0 chrX 133383179 133383257 -29216673 + CT-rich Low_complexity Low_complexity 2 79 0 792 164 7 7 chrX 133383284 133383424 -29216506 + MER87 LTR ERV1 1 140 -401 419 88 0 0 chrX 133383456 133383513 -29216417 + Alu SINE Alu 1 57 -253 216 178 0 0 chrX 133383542 133383587 -29216343 + (CCTG)n Simple_repeat Simple_repeat 2 46 0 201 311 14 0 chrX 133383636 133383710 -29216220 + CT-rich Low_complexity Low_complexity 2 76 0 183 139 0 0 chrX 133383730 133383766 -29216164 + (TC)n Simple_repeat Simple_repeat 2 37 0 312 268 0 56 chrX 133383955 133384134 -29215796 + T-rich Low_complexity Low_complexity 4 172 0 2218 107 0 10 chrX 133384193 133384493 -29215437 + AluSx SINE Alu 1 297 -15 316 312 6 35 chrX 133384685 133384858 -29215072 + CT-rich Low_complexity Low_complexity 1 168 0 327 283 12 30 chrX 133384914 133385080 -29214850 + CT-rich Low_complexity Low_complexity 2 164 0 228 149 0 0 chrX 133385085 133385132 -29214798 + (TC)n Simple_repeat Simple_repeat 1 47 0 242 56 28 0 chrX 133385132 133385168 -29214762 + (GA)n Simple_repeat Simple_repeat 1 37 0 243 88 0 0 chrX 133385314 133385348 -29214582 + (TG)n Simple_repeat Simple_repeat 2 35 0 33 35 0 17 chrX 133385670 133385689 -29214241 + AT_rich Low_complexity Low_complexity 1 19 -38 1728 195 0 16 chrX 133385689 133385996 -29213934 + AluJo SINE Alu 1 302 -10 33 35 0 17 chrX 133385996 133386034 -29213896 + AT_rich Low_complexity Low_complexity 19 57 0 2338 92 3 0 chrX 133387055 133387347 -29212583 + AluSp SINE Alu 1 293 -20 4363 57 35 9 chrX 133387547 133388553 -29211377 - MER11A LTR ERVK 0 1266 1 1776 172 7 7 chrX 133388661 133388963 -29210967 + AluJb SINE Alu 1 302 -10 2043 146 0 0 chrX 133389929 133390262 -29209668 + AluSx SINE Alu 1 312 0 378 0 0 0 chrX 133391422 133391464 -29208466 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 43930 32 21 1 chrX 133392511 133398541 -29201389 + L1HS LINE L1 3 6155 0 410 0 271 0 chrX 133398750 133398809 -29201121 - MADE1 DNA Mariner -5 75 1 245 253 27 0 chrX 133399814 133399889 -29200041 + CT-rich Low_complexity Low_complexity 2 78 0 305 252 34 84 chrX 133399912 133400031 -29199899 - L2 LINE L2 -2 3311 3199 688 11 22 0 chrX 133400090 133400179 -29199751 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 4009 189 44 52 chrX 133400179 133400714 -29199216 + L1MEc LINE L1 1682 2220 -4320 1048 224 0 0 chrX 133400714 133400919 -29199011 - L1PA15 LINE L1 -1 6164 5960 4009 189 44 52 chrX 133400919 133401512 -29198418 + L1MEc LINE L1 2220 2798 -3742 2571 70 0 3 chrX 133401512 133401824 -29198106 + AluY SINE Alu 1 311 0 4009 189 44 52 chrX 133401824 133401967 -29197963 + L1MEc LINE L1 2798 2941 -3599 291 290 80 22 chrX 133401962 133402100 -29197830 + L1ME3A LINE L1 5736 5881 -289 * 210 250 18 0 chrX 133402324 133402380 -29197550 + CT-rich Low_complexity Low_complexity 2 58 0 2024 194 32 36 chrX 133402736 133403205 -29196725 - MLT1C LTR MaLR 0 467 1 1839 187 69 19 chrX 133403217 133403488 -29196442 - MLT1C-int LTR MaLR -7 1364 1069 2110 115 0 30 chrX 133403488 133403792 -29196138 + AluSx SINE Alu 1 295 -17 1839 187 69 19 chrX 133403792 133403884 -29196046 - MLT1C-int LTR MaLR -302 1069 983 2674 202 26 41 chrX 133406962 133407268 -29192662 - MLT1C-int LTR MaLR -472 899 590 1874 181 0 7 chrX 133407268 133407572 -29192358 - AluJb SINE Alu -10 302 1 2674 202 26 41 chrX 133407572 133408060 -29191870 - MLT1C-int LTR MaLR -781 590 1 776 148 0 0 chrX 133408062 133408177 -29191753 - MLT1C LTR MaLR -2 465 351 2327 151 35 55 chrX 133408177 133408262 -29191668 + MER83 LTR ERV1 1 86 -362 2046 137 37 0 chrX 133408262 133408561 -29191369 - AluSx SINE Alu 0 312 3 2327 151 35 55 chrX 133408561 133408932 -29190998 + MER83 LTR ERV1 86 448 0 31118 97 14 27 chrX 133408932 133413250 -29186680 + MER83-int LTR ERV1 12 4274 -11 2817 143 11 9 chrX 133413251 133413691 -29186239 + MER83 LTR ERV1 1 441 -7 523 200 57 71 chrX 133413698 133413967 -29185963 - MLT1C LTR MaLR -122 345 16 275 316 42 0 chrX 133414447 133414542 -29185388 + L1MC4 LINE L1 7777 7875 -167 1478 114 160 34 chrX 133415105 133415367 -29184563 + AluJo SINE Alu 2 296 -6 2083 125 20 0 chrX 133415728 133416033 -29183897 - AluSx SINE Alu -1 311 1 346 271 188 0 chrX 133416520 133416664 -29183266 - MIR SINE MIR 0 262 92 2563 233 42 16 chrX 133416870 133417184 -29182746 - L2 LINE L2 -359 2955 2651 1928 170 35 80 chrX 133417184 133417673 -29182257 - MLT1C LTR MaLR 0 467 1 2563 233 42 16 chrX 133417673 133418065 -29181865 - L2 LINE L2 -663 2651 2230 1973 251 80 100 chrX 133418080 133419269 -29180661 - L2 LINE L2 -2063 1251 87 1097 91 14 0 chrX 133419420 133419563 -29180367 - BC200 scRNA scRNA -55 145 1 352 216 151 14 chrX 133419733 133419872 -29180058 - HAL1b LINE L1 0 1348 1191 387 278 21 35 chrX 133419949 133420051 -29179879 - MIR3 SINE MIR -48 160 59 2123 93 6 56 chrX 133420051 133420374 -29179556 - AluSg SINE Alu -3 307 1 387 278 21 35 chrX 133420374 133420415 -29179515 - MIR3 SINE MIR -149 59 19 521 244 0 39 chrX 133420527 133420654 -29179276 - L2 LINE L2 0 3313 3192 23 0 0 0 chrX 133420963 133420986 -29178944 + AT_rich Low_complexity Low_complexity 1 23 0 294 29 0 0 chrX 133421300 133421335 -29178595 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 311 14 0 chrX 133423136 133423210 -29176720 + T-rich Low_complexity Low_complexity 5 79 0 407 261 27 0 chrX 133423780 133423891 -29176039 + MIR SINE MIR 147 260 -2 186 234 13 91 chrX 133424043 133424120 -29175810 - L2 LINE L2 -2807 507 437 814 115 53 0 chrX 133424707 133424820 -29175110 + FRAM SINE Alu 21 139 -37 297 185 62 12 chrX 133424942 133425023 -29174907 - MER21B LTR ERV1 -379 484 400 469 231 105 65 chrX 133425048 133425295 -29174635 + MIR SINE MIR 5 261 -1 383 281 88 19 chrX 133425295 133425455 -29174475 - MIR SINE MIR -72 190 20 187 262 0 0 chrX 133426518 133426560 -29173370 + L2 LINE L2 3264 3305 -8 225 0 0 0 chrX 133426885 133426910 -29173020 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 679 237 5 37 chrX 133428875 133428976 -29170954 + MIR SINE MIR 58 152 -110 2135 111 20 3 chrX 133428976 133429274 -29170656 + AluSx SINE Alu 1 303 -9 679 237 5 37 chrX 133429274 133429362 -29170568 + MIR SINE MIR 152 241 -21 534 158 6 165 chrX 133429416 133429580 -29170350 + FLAM_A SINE Alu 1 138 -4 184 146 55 36 chrX 133430909 133430964 -29168966 + CT-rich Low_complexity Low_complexity 5 60 0 474 238 136 55 chrX 133430998 133431233 -29168697 + MIR SINE MIR 9 262 0 518 314 17 6 chrX 133431776 133431951 -29167979 - MIR3 SINE MIR -7 201 25 239 200 12 75 chrX 133431953 133432033 -29167897 + MER74C LTR ERVL 329 403 -57 22 0 0 0 chrX 133432046 133432068 -29167862 + AT_rich Low_complexity Low_complexity 1 22 0 2123 165 35 60 chrX 133432081 133432560 -29167370 + MLT1C LTR MaLR 1 467 0 290 122 0 0 chrX 133432737 133432778 -29167152 - MLT2B1 LTR ERVL 0 520 480 1179 117 0 0 chrX 133432779 133432959 -29166971 + (TA)n Simple_repeat Simple_repeat 1 180 0 270 0 0 0 chrX 133433019 133433049 -29166881 + (TA)n Simple_repeat Simple_repeat 2 31 0 346 311 0 0 chrX 133433252 133433342 -29166588 - L1MC4 LINE L1 -1339 6703 6614 1826 180 30 6 chrX 133433342 133433708 -29166222 - MLT2B1 LTR ERVL -91 429 5 2108 168 0 39 chrX 133435017 133435106 -29164824 + MLT2D LTR ERVL 1 92 -322 2103 110 30 10 chrX 133435106 133435407 -29164523 - AluSx SINE Alu -5 307 1 2108 168 0 39 chrX 133435407 133435698 -29164232 + MLT2D LTR ERVL 92 366 -48 183 42 0 0 chrX 133435720 133435744 -29164186 + (TC)n Simple_repeat Simple_repeat 1 24 0 252 130 99 7 chrX 133435773 133435835 -29164095 + MLT2C1 LTR ERVL 345 397 0 543 329 55 12 chrX 133436172 133436427 -29163503 - L2 LINE L2 -31 3282 3017 673 321 40 53 chrX 133436432 133436809 -29163121 - L2 LINE L2 -93 3179 2808 186 43 0 0 chrX 133436859 133436882 -29163048 + (TTA)n Simple_repeat Simple_repeat 2 24 0 400 273 0 10 chrX 133436895 133436994 -29162936 - MIR SINE MIR -131 131 34 417 182 0 0 chrX 133437210 133437276 -29162654 + MLT2D LTR ERVL 1 66 -348 448 256 16 16 chrX 133437374 133437495 -29162435 - MIR SINE MIR -114 148 28 254 306 204 0 chrX 133437590 133437737 -29162193 - MIR SINE MIR -11 251 75 1178 222 19 30 chrX 133437863 133438129 -29161801 - MLT1A2 LTR MaLR 0 374 112 1451 133 35 4 chrX 133638129 133638384 -28961546 - MLT1A1 LTR MaLR -102 263 1 5044 75 28 0 chrX 133638389 133639069 -28960861 + L1PA11 LINE L1 5476 6174 0 2171 122 65 14 chrX 133639071 133639505 -28960425 + L1MCa LINE L1 1187 1642 -4784 395 113 0 0 chrX 133639500 133639571 -28960359 + L1MCa LINE L1 1863 1933 -4493 * 2507 79 7 0 chrX 133639571 133639876 -28960054 + AluSq SINE Alu 1 307 -6 7412 130 21 6 chrX 133639879 133641105 -28958825 + Tigger1 DNA MER2_type 1167 2411 -7 3141 211 30 11 chrX 133641122 133642451 -28957479 + L1MCa LINE L1 2041 3392 -3034 4618 125 5 37 chrX 133642453 133643239 -28956691 + L1MC1 LINE L1 5573 6333 0 21 0 0 0 chrX 133646150 133646171 -28953759 + AT_rich Low_complexity Low_complexity 1 21 0 2132 79 68 0 chrX 133646309 133646588 -28953342 + AluSp SINE Alu 1 298 -15 2196 130 69 47 chrX 133646716 133646902 -28953028 + MSTB1 LTR MaLR 1 182 -250 2328 95 10 0 chrX 133646902 133647208 -28952722 + AluSc SINE Alu 1 309 0 2196 130 69 47 chrX 133647208 133647444 -28952486 + MSTB1 LTR MaLR 182 432 0 183 42 0 0 chrX 133650110 133650134 -28949796 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2231 166 75 16 chrX 133650723 133651164 -28948766 + MLT1C LTR MaLR 1 467 0 534 293 63 11 chrX 133652021 133652195 -28947735 + MER5A DNA MER1_type 6 188 -1 252 86 0 0 chrX 133653624 133653659 -28946271 + (CA)n Simple_repeat Simple_repeat 2 36 0 231 365 0 0 chrX 133653668 133653731 -28946199 + L2 LINE L2 3192 3254 -18 * 378 296 70 40 chrX 133653720 133653766 -28946164 - MIR SINE MIR -57 205 162 2152 111 0 10 chrX 133653766 133654072 -28945858 - AluSp SINE Alu -10 303 1 378 296 70 40 chrX 133654072 133654224 -28945706 - MIR SINE MIR -100 162 1 2568 247 12 42 chrX 133655299 133656152 -28943778 + L1ME LINE L1 25 851 -5219 578 153 17 0 chrX 133656235 133656353 -28943577 - L1ME LINE L1 -5237 833 714 1216 266 70 36 chrX 133656357 133657099 -28942831 + L1ME LINE L1 895 1661 -4600 2106 144 7 0 chrX 133659324 133659623 -28940307 - AluJb SINE Alu -11 301 1 228 111 0 0 chrX 133660815 133660851 -28939079 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 281 77 0 0 chrX 133661268 133661307 -28938623 + MADE1 DNA Mariner 42 80 0 2333 92 3 3 chrX 133661383 133661687 -28938243 + AluSx SINE Alu 1 304 -8 193 341 207 0 chrX 133661997 133662079 -28937851 + L2 LINE L2 3160 3258 -14 327 292 11 0 chrX 133662430 133662519 -28937411 - MIR SINE MIR -109 153 64 271 331 111 0 chrX 133662523 133662622 -28937308 + MIR SINE MIR 38 146 -66 597 235 98 39 chrX 133662687 133662891 -28937039 - MIR SINE MIR -46 216 1 180 0 0 0 chrX 133666192 133666212 -28933718 + (TG)n Simple_repeat Simple_repeat 1 20 0 219 133 33 17 chrX 133666212 133666272 -28933658 + GA-rich Low_complexity Low_complexity 2 62 0 466 315 51 48 chrX 133666695 133666968 -28932962 - L3b LINE CR1 -95 1488 1215 204 326 58 0 chrX 133667634 133667720 -28932210 + MIR3 SINE MIR 110 200 -8 350 151 14 0 chrX 133668351 133668424 -28931506 + GA-rich Low_complexity Low_complexity 1 74 0 393 277 87 54 chrX 133669111 133669295 -28930635 - MIR SINE MIR -66 196 7 3376 229 65 30 chrX 133669324 133670375 -28929555 + L1MEc LINE L1 35 1121 -5275 532 218 45 101 chrX 133670380 133670688 -28929242 + L1PBb LINE L1 776 1066 -5783 4270 218 85 6 chrX 133670890 133672065 -28927865 + L1PBb LINE L1 1080 2441 -4407 1533 174 44 0 chrX 133672141 133672434 -28927496 + L1PB4 LINE L1 5851 6156 0 1157 268 135 3 chrX 133672434 133672749 -28927181 + L1MEc LINE L1 1113 1385 -5011 6411 19 1 4 chrX 133672749 133673493 -28926437 - L1PA3 LINE L1 0 6155 5414 1157 268 135 3 chrX 133673493 133673771 -28926159 + L1MEc LINE L1 1385 1784 -4612 553 274 7 40 chrX 133673772 133674046 -28925884 + L1ME1 LINE L1 5898 6162 -4 220 345 100 50 chrX 133674862 133675082 -28924848 + L2 LINE L2 2550 2780 -534 205 416 20 0 chrX 133675493 133675594 -28924336 + L2 LINE L2 3169 3271 -1 1755 81 201 40 chrX 133675669 133675940 -28923990 + MSTC LTR MaLR 54 387 -41 2398 91 0 0 chrX 133675940 133676237 -28923693 + AluSq SINE Alu 2 298 -15 1755 81 201 40 chrX 133676237 133676288 -28923642 + MSTC LTR MaLR 387 428 0 1047 301 142 20 chrX 133676338 133677000 -28922930 + L2 LINE L2 2554 3311 -2 535 289 96 85 chrX 133677001 133677533 -28922397 - L2 LINE L2 -9 3263 2724 299 235 59 78 chrX 133679374 133679406 -28920524 - MIR3 SINE MIR -23 185 154 607 181 31 109 chrX 133679406 133679599 -28920331 - MER5B DNA MER1_type 0 178 1 299 235 59 78 chrX 133679599 133679668 -28920262 - MIR3 SINE MIR -54 154 86 483 330 64 26 chrX 133679681 133679914 -28920016 + MIR SINE MIR 20 261 -1 205 205 0 26 chrX 133679937 133679976 -28919954 - MIR SINE MIR -150 58 21 2246 76 0 0 chrX 133680473 133680748 -28919182 + AluY SINE Alu 37 311 0 342 287 0 57 chrX 133682091 133682213 -28917717 - MIR SINE MIR -146 116 2 559 260 23 51 chrX 133682338 133682539 -28917391 - MIR3 SINE MIR -7 201 5 412 245 32 0 chrX 133682580 133682674 -28917256 - L2 LINE L2 -1011 2303 2207 652 216 0 0 chrX 133682752 133682868 -28917062 - L2 LINE L2 -6 3307 3192 1437 148 0 0 chrX 133682900 133683110 -28916820 + AluJb SINE Alu 85 294 -18 1976 263 25 14 chrX 133683121 133683762 -28916168 - L2 LINE L2 -192 3121 2472 189 333 0 0 chrX 133684182 133684233 -28915697 - L3 LINE CR1 -4 1573 1523 2609 134 29 2 chrX 133684279 133684696 -28915234 + MSTA LTR MaLR 1 428 0 183 397 16 0 chrX 133687379 133687505 -28912425 + L2 LINE L2 2784 2911 -403 353 276 204 20 chrX 133687515 133687711 -28912219 + MIR SINE MIR 1 232 -30 312 299 103 8 chrX 133687717 133687834 -28912096 + L2 LINE L2 2926 3053 -219 272 231 0 31 chrX 133688456 133688521 -28911409 - Zaphod DNA AcHobo -3968 63 1 249 33 0 0 chrX 133689151 133689181 -28910749 + (CA)n Simple_repeat Simple_repeat 2 31 0 281 242 0 44 chrX 133689234 133689325 -28910605 + MIR SINE MIR 65 151 -111 222 238 0 32 chrX 133689325 133689388 -28910542 + MIR SINE MIR 110 170 -92 243 211 113 14 chrX 133689509 133689580 -28910350 - L2 LINE L2 0 3272 3195 22 56 0 0 chrX 133690073 133690109 -28909821 + AT_rich Low_complexity Low_complexity 1 36 0 2187 101 3 29 chrX 133690715 133691023 -28908907 - AluSx SINE Alu -12 300 1 269 317 129 20 chrX 133691327 133691428 -28908502 - L2 LINE L2 -40 3232 3121 681 281 89 13 chrX 133691457 133691681 -28908249 - MIR SINE MIR -14 248 8 1725 271 64 19 chrX 133691811 133692342 -28907588 + MLT1H1 LTR MaLR 1 555 0 1945 92 0 4 chrX 133692725 133692974 -28906956 - AluSx SINE Alu -1 311 64 429 243 160 12 chrX 133693025 133693194 -28906736 - MIR SINE MIR 0 262 69 29 28 0 0 chrX 133695136 133695172 -28904758 + AT_rich Low_complexity Low_complexity 1 36 0 235 330 37 28 chrX 133695294 133695403 -28904527 + L2 LINE L2 2945 3054 -218 399 211 37 37 chrX 133695744 133695853 -28904077 + L2 LINE L2 3205 3313 0 1156 206 34 0 chrX 133698064 133698297 -28901633 - MIR SINE MIR 0 262 22 1045 194 76 30 chrX 133698827 133699064 -28900866 - MIR SINE MIR -14 248 1 34 89 0 0 chrX 133699473 133699563 -28900367 + AT_rich Low_complexity Low_complexity 1 90 0 725 250 136 0 chrX 133699641 133699869 -28900061 - MIR SINE MIR -2 260 2 415 197 197 0 chrX 133700346 133700468 -28899462 - MER5A DNA MER1_type -3 186 41 433 273 91 30 chrX 133700586 133700751 -28899179 - L3b LINE CR1 -127 1456 1282 180 111 0 0 chrX 133700778 133700805 -28899125 + (TATG)n Simple_repeat Simple_repeat 2 28 0 254 95 24 0 chrX 133701630 133701672 -28898258 + (TC)n Simple_repeat Simple_repeat 2 44 0 188 314 0 58 chrX 133701937 133702023 -28897907 - L2 LINE L2 -55 3217 3137 576 246 40 63 chrX 133702080 133702255 -28897675 - MIR SINE MIR -11 251 81 232 233 17 17 chrX 133703212 133703272 -28896658 - MIR3 SINE MIR -11 197 138 189 0 0 0 chrX 133703398 133703419 -28896511 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 181 294 141 0 chrX 133703750 133703835 -28896095 + L2 LINE L2 2948 3044 -228 1858 169 65 9 chrX 133703835 133704160 -28895770 + MER61A LTR ERV1 1 343 0 275 275 69 118 chrX 133704249 133704638 -28895292 - L2 LINE L2 -2 3311 2942 251 346 103 19 chrX 133704651 133704807 -28895123 + L2 LINE L2 3103 3271 -1 390 21 0 0 chrX 133705642 133705689 -28894241 + (CA)n Simple_repeat Simple_repeat 2 48 0 215 356 14 14 chrX 133705936 133706009 -28893921 + MIR SINE MIR 12 84 -178 438 298 98 29 chrX 133706066 133706271 -28893659 - L2 LINE L2 -1 3312 3094 354 264 66 0 chrX 133706279 133706385 -28893545 + MIR SINE MIR 138 250 -12 206 380 0 0 chrX 133706409 133706480 -28893450 - L2 LINE L2 -73 3199 3129 482 264 0 9 chrX 133706495 133706605 -28893325 - MIR SINE MIR -120 142 34 219 329 24 35 chrX 133706756 133706841 -28893089 + L2 LINE L2 3189 3272 0 2167 136 3 3 chrX 133707490 133707800 -28892130 + AluSx SINE Alu 1 310 -2 2221 39 24 0 chrX 133707906 133708161 -28891769 - L1PA7 LINE L1 0 6154 5894 1296 224 24 0 chrX 133708195 133708449 -28891481 - MIR SINE MIR 0 262 3 185 222 67 0 chrX 133708461 133708506 -28891424 - MIR3 SINE MIR -3 205 158 1249 135 21 5 chrX 133708551 133708743 -28891187 + MER20 DNA MER1_type 25 219 0 227 323 32 0 chrX 133709136 133709198 -28890732 + L2 LINE L2 3245 3308 -5 213 196 0 0 chrX 133709672 133709723 -28890207 + GA-rich Low_complexity Low_complexity 3 53 0 417 284 58 26 chrX 133710132 133710287 -28889643 + MIR SINE MIR 9 168 -94 856 280 8 35 chrX 133710315 133710373 -28889557 - MIR SINE MIR -8 254 196 4363 170 29 6 chrX 133710373 133711090 -28888840 + MER50 LTR ERV1 1 734 0 856 280 8 35 chrX 133711090 133711288 -28888642 - MIR SINE MIR -66 196 5 189 286 204 10 chrX 133712379 133712468 -28887462 + MIR SINE MIR 3 110 -152 330 293 103 40 chrX 133712468 133712642 -28887288 + MER5A DNA MER1_type 3 187 -2 194 229 108 60 chrX 133712645 133712728 -28887202 + MIR SINE MIR 117 203 -59 206 327 0 18 chrX 133712852 133712907 -28887023 - L2 LINE L2 -94 3178 3125 785 242 68 28 chrX 133713832 133714080 -28885850 + MIR SINE MIR 5 262 0 558 101 13 0 chrX 133714226 133714305 -28885625 - MADE1 DNA Mariner 0 80 1 209 240 13 0 chrX 133716169 133716244 -28883686 + CT-rich Low_complexity Low_complexity 1 76 0 427 274 50 40 chrX 133716468 133716655 -28883275 + MIR SINE MIR 4 192 -70 238 288 15 0 chrX 133721319 133721385 -28878545 + MER39 LTR ERV1 376 442 -265 638 288 68 5 chrX 133725270 133725461 -28874469 - MIR SINE MIR -12 250 48 683 254 93 19 chrX 133725478 133725683 -28874247 - MIR SINE MIR -29 233 14 5533 137 0 0 chrX 133726052 133726825 -28873105 + LTR41 LTR ERVL 1 773 0 499 281 152 13 chrX 133728633 133728655 -28871275 + MIR SINE MIR 8 26 -236 3292 98 125 63 chrX 133728655 133729229 -28870701 - MER4B LTR ERV1 0 610 1 499 281 152 13 chrX 133729229 133729430 -28870500 + MIR SINE MIR 26 262 0 391 198 135 10 chrX 133729549 133729645 -28870285 + L1ME4a LINE L1 4831 4938 -1208 8600 175 60 12 chrX 133729698 133730833 -28869097 + L1MD1 LINE L1 3704 4784 -1458 264 59 0 0 chrX 133730833 133730867 -28869063 + (CA)n Simple_repeat Simple_repeat 1 34 0 8600 175 60 12 chrX 133730867 133732118 -28867812 + L1MD1 LINE L1 4784 6242 0 854 266 77 33 chrX 133733739 133734168 -28865762 + L1ME4a LINE L1 5634 6081 -40 2239 93 17 0 chrX 133734216 133734505 -28865425 + AluSx SINE Alu 1 294 -18 969 229 37 14 chrX 133734609 133734827 -28865103 - MER58A DNA MER1_type -1 223 1 231 36 0 0 chrX 133735587 133735615 -28864315 + (CA)n Simple_repeat Simple_repeat 1 28 0 799 269 0 20 chrX 133736548 133736745 -28863185 + MIR3 SINE MIR 16 208 0 2634 135 10 5 chrX 133737208 133737624 -28862306 + MER47B DNA MER2_type 1 418 0 474 251 89 42 chrX 133737688 133737902 -28862028 - MIR SINE MIR -1 261 38 2045 128 7 7 chrX 133738255 133738552 -28861378 + AluSx SINE Alu 1 297 -15 637 216 8 8 chrX 133738951 133739085 -28860845 + MIR SINE MIR 11 144 -118 180 222 44 0 chrX 133739116 133739161 -28860769 + L2 LINE L2 3207 3253 -19 987 337 94 30 chrX 133740202 133740745 -28859185 + L3 LINE CR1 180 757 -820 513 296 7 21 chrX 133740809 133740951 -28858979 - MIR SINE MIR -121 141 2 1166 254 171 43 chrX 133741244 133741608 -28858322 + L3 LINE CR1 769 1085 -492 2201 121 0 26 chrX 133741608 133741914 -28858016 - AluSx SINE Alu -14 298 1 1166 254 171 43 chrX 133741914 133742112 -28857818 + L3 LINE CR1 1085 1403 -174 219 357 20 0 chrX 133742127 133742225 -28857705 - MIR SINE MIR -1 261 162 320 255 22 109 chrX 133742237 133742421 -28857509 + L3 LINE CR1 1408 1575 -2 22 0 0 0 chrX 133742647 133742669 -28857261 + AT_rich Low_complexity Low_complexity 1 22 0 2389 108 3 18 chrX 133742902 133743243 -28856687 + MER1B DNA MER1_type 2 337 0 393 227 8 83 chrX 133743260 133743392 -28856538 - MIR SINE MIR -63 199 78 421 270 156 55 chrX 133746327 133746564 -28853366 - MIR SINE MIR 0 262 2 21 36 0 0 chrX 133747354 133747382 -28852548 + AT_rich Low_complexity Low_complexity 1 28 0 313 231 17 64 chrX 133747965 133748138 -28851792 + (TCTG)n Simple_repeat Simple_repeat 4 168 0 * 366 279 11 17 chrX 133748029 133748229 -28851701 + (TCTCTG)n Simple_repeat Simple_repeat 1 198 0 452 271 18 26 chrX 133748297 133748680 -28851250 + (TCTG)n Simple_repeat Simple_repeat 1 379 0 214 265 35 41 chrX 133748776 133748946 -28850984 + (TCTG)n Simple_repeat Simple_repeat 4 172 0 * 258 263 13 53 chrX 133748901 133749053 -28850877 + (TCTCTG)n Simple_repeat Simple_repeat 5 150 0 287 279 16 0 chrX 133749066 133749188 -28850742 + (TCTG)n Simple_repeat Simple_repeat 3 126 0 4659 154 11 23 chrX 133749196 133750169 -28849761 - L1MB5 LINE L1 -39 6135 5176 356 289 4 24 chrX 133750269 133750486 -28849444 + CT-rich Low_complexity Low_complexity 1 212 0 253 292 6 29 chrX 133750518 133750689 -28849241 + CT-rich Low_complexity Low_complexity 1 167 0 * 301 306 17 6 chrX 133750621 133750794 -28849136 + (TCTCTG)n Simple_repeat Simple_repeat 5 179 0 * 362 335 6 6 chrX 133750713 133750892 -28849038 + CT-rich Low_complexity Low_complexity 1 179 0 206 295 11 0 chrX 133750914 133751009 -28848921 + CT-rich Low_complexity Low_complexity 2 97 0 183 174 22 33 chrX 133751016 133751108 -28848822 + (TCTCTG)n Simple_repeat Simple_repeat 4 94 0 393 318 0 20 chrX 133751209 133751360 -28848570 + CT-rich Low_complexity Low_complexity 2 149 0 230 282 49 25 chrX 133751277 133751440 -28848490 + (TCTCTG)n Simple_repeat Simple_repeat 2 168 0 * 242 358 0 8 chrX 133751404 133751538 -28848392 + CT-rich Low_complexity Low_complexity 2 134 0 * 266 267 0 82 chrX 133751457 133751652 -28848278 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 1553 143 14 0 chrX 133751706 133752035 -28847895 - L1MA5 LINE L1 -204 5964 5614 1613 148 20 7 chrX 133752035 133752336 -28847594 + L1MA5 LINE L1 5994 6300 0 2688 128 2 9 chrX 133752599 133753028 -28846902 + L1PA16 LINE L1 5721 6146 -20 792 196 12 29 chrX 133753328 133753501 -28846429 + MIR SINE MIR 93 262 0 245 250 202 10 chrX 133753577 133753681 -28846249 + MIR3 SINE MIR 81 204 -4 2381 92 27 16 chrX 133753724 133754094 -28845836 - L1MA2 LINE L1 0 6304 5931 309 230 11 0 chrX 133755788 133755875 -28844055 - L1MD2 LINE L1 0 6359 6272 1334 170 0 30 chrX 133755875 133756105 -28843825 - AluJo SINE Alu -19 293 71 343 157 14 71 chrX 133756169 133756239 -28843691 - AluJo SINE Alu -236 66 1 8359 216 44 38 chrX 133756243 133757479 -28842451 - L1MD3 LINE L1 -73 8316 7088 1797 108 54 0 chrX 133757479 133757739 -28842191 + AluSx SINE Alu 36 309 -3 8359 216 44 38 chrX 133757739 133758668 -28841262 - L1MD3 LINE L1 -1301 7088 6166 2263 92 0 0 chrX 133758668 133758950 -28840980 + AluSg SINE Alu 29 310 0 8359 216 44 38 chrX 133758950 133759618 -28840312 - L1MD3 LINE L1 -2223 6166 5503 2175 169 48 17 chrX 133759618 133760033 -28839897 - MSTA LTR MaLR 0 428 1 8359 216 44 38 chrX 133760033 133760440 -28839490 - L1MD3 LINE L1 -2886 5503 5100 1707 159 0 25 chrX 133760440 133760723 -28839207 + AluJo SINE Alu 14 289 -23 8359 216 44 38 chrX 133760723 133761290 -28838640 - L1MD3 LINE L1 -3289 5100 2705 238 140 53 0 chrX 133761291 133761348 -28838582 - L1MD3 LINE L1 -4445 2095 2036 * 2603 193 114 100 chrX 133761346 133761723 -28838207 - L1MD3 LINE L1 -5565 975 605 906 142 0 0 chrX 133761723 133761850 -28838080 + FLAM_C SINE Alu 3 129 -4 2603 193 114 100 chrX 133761850 133762431 -28837499 - L1MD3 LINE L1 -5935 605 4 201 39 0 0 chrX 133762709 133762735 -28837195 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 1178 257 44 51 chrX 133763578 133764047 -28835883 - L1ME3A LINE L1 -235 5935 5464 945 211 0 20 chrX 133764047 133764251 -28835679 - MER105 DNA DNA -4 200 1 1178 257 44 51 chrX 133764251 133764913 -28835017 - L1ME3A LINE L1 -706 5464 4809 423 254 114 16 chrX 133764951 133765144 -28834786 - MIR SINE MIR -49 213 2 600 210 35 35 chrX 133765357 133765500 -28834430 + L2 LINE L2 3158 3300 -13 189 74 0 0 chrX 133765501 133765528 -28834402 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 347 307 90 42 chrX 133765616 133765805 -28834125 - L2 LINE L2 0 3313 3116 204 298 0 0 chrX 133766241 133766298 -28833632 + T-rich Low_complexity Low_complexity 2 58 0 197 311 58 19 chrX 133766303 133766406 -28833524 + MIR3 SINE MIR 2 108 -100 207 292 0 0 chrX 133767840 133767888 -28832042 + L2 LINE L2 3261 3308 -5 861 289 53 30 chrX 133768660 133769154 -28830776 + L1ME3A LINE L1 5255 5759 -2049 471 270 68 0 chrX 133769221 133769384 -28830546 + L1ME3A LINE L1 5965 6138 -32 296 205 52 90 chrX 133769441 133769578 -28830352 + MIR SINE MIR 16 154 -67 393 387 20 5 chrX 133769690 133769889 -28830041 + L2 LINE L2 2542 2743 -571 286 250 28 42 chrX 133770999 133771071 -28828859 + L2 LINE L2 3190 3260 -12 392 323 15 41 chrX 133771107 133771302 -28828628 + L2 LINE L2 3123 3312 -1 424 237 92 15 chrX 133771304 133771435 -28828495 - MIR SINE MIR -36 226 86 445 303 51 46 chrX 133771487 133771682 -28828248 + MIR SINE MIR 53 248 -14 26 0 0 0 chrX 133771916 133771942 -28827988 + AT_rich Low_complexity Low_complexity 1 26 0 362 253 53 11 chrX 133772381 133772476 -28827454 - MER5B DNA MER1_type 0 178 80 832 254 80 27 chrX 133772482 133772706 -28827224 + MIR SINE MIR 25 260 -2 1813 127 7 0 chrX 133773250 133773525 -28826405 + AluJo SINE Alu 17 293 -19 25 0 0 0 chrX 133773528 133773553 -28826377 + AT_rich Low_complexity Low_complexity 1 25 0 206 299 9 65 chrX 133774049 133774156 -28825774 - MIR SINE MIR -116 146 46 2486 136 62 7 chrX 133774435 133774841 -28825089 + MSTA LTR MaLR 1 428 0 439 304 44 15 chrX 133775258 133775351 -28824579 + MIR3 SINE MIR 56 156 -52 1834 133 41 24 chrX 133775351 133775644 -28824286 + AluJb SINE Alu 1 298 -14 439 304 44 15 chrX 133775644 133775685 -28824245 + MIR3 SINE MIR 156 194 -14 234 335 157 25 chrX 133776345 133776542 -28823388 - L3b LINE CR1 -88 1495 1273 197 231 0 0 chrX 133777857 133777896 -28822034 - L2 LINE L2 -11 3302 3264 205 384 39 26 chrX 133778095 133778327 -28821603 - L2 LINE L2 -224 3048 2814 352 234 241 25 chrX 133778486 133778644 -28821286 + MIR SINE MIR 1 192 -70 257 345 63 24 chrX 133778622 133778909 -28821021 - L2 LINE L2 -1205 2109 1812 * 234 0 0 0 chrX 133779915 133779941 -28819989 + (TTG)n Simple_repeat Simple_repeat 2 27 0 712 288 59 21 chrX 133780359 133780595 -28819335 - MIR SINE MIR -10 252 8 415 294 25 131 chrX 133781277 133781637 -28818293 + L2 LINE L2 2935 3256 -16 2201 123 0 0 chrX 133782721 133783022 -28816908 - AluSx SINE Alu -11 301 1 2433 74 3 0 chrX 133783183 133783481 -28816449 + AluSp SINE Alu 6 304 -9 23 0 0 0 chrX 133783485 133783508 -28816422 + AT_rich Low_complexity Low_complexity 1 23 0 394 279 161 0 chrX 133783947 133784108 -28815822 + MIR SINE MIR 1 187 -75 6474 16 0 0 chrX 133784542 133785313 -28814617 - L1PA3 LINE L1 -5 6150 5380 458 333 0 0 chrX 133785432 133785564 -28814366 + MIR SINE MIR 131 262 0 300 322 33 41 chrX 133786472 133786593 -28813337 - L3 LINE CR1 0 1577 1458 433 245 238 14 chrX 133788583 133788726 -28811204 - MER5A DNA MER1_type -6 183 9 186 338 90 15 chrX 133788785 133788918 -28811012 + L2 LINE L2 2917 3059 -213 297 179 40 26 chrX 133789041 133789119 -28810811 - MIR SINE MIR -63 145 76 828 134 45 0 chrX 133789124 133789258 -28810672 - BC200 scRNA scRNA -60 140 1 258 326 0 61 chrX 133789400 133789532 -28810398 + L2 LINE L2 3144 3267 -5 499 206 19 35 chrX 133789559 133789695 -28810235 + Tigger5 DNA MER2_type 3 193 -2130 350 237 0 0 chrX 133789697 133789773 -28810157 + Tigger5 DNA MER2_type 2248 2323 0 388 73 0 0 chrX 133790116 133790171 -28809759 - L1PA13 LINE L1 -392 5773 5719 2749 83 13 8 chrX 133790171 133790555 -28809375 + L1PA13 LINE L1 5776 6163 0 961 150 0 111 chrX 133790570 133790647 -28809283 - MER3 DNA MER1_type -1 208 124 2397 82 0 3 chrX 133790647 133790953 -28808977 + AluSg SINE Alu 1 305 -5 961 150 0 111 chrX 133790953 133791109 -28808821 - MER3 DNA MER1_type -85 124 1 198 228 88 18 chrX 133791109 133791166 -28808764 + MIR SINE MIR 31 91 -171 378 292 143 0 chrX 133791174 133791335 -28808595 + MIR SINE MIR 68 251 -11 673 354 16 8 chrX 133793792 133794038 -28805892 + L2 LINE L2 2811 3058 -214 204 40 0 0 chrX 133794112 133794137 -28805793 + (TG)n Simple_repeat Simple_repeat 2 26 0 716 322 25 25 chrX 133794137 133794423 -28805507 - L2 LINE L2 -576 2738 2453 419 217 18 151 chrX 133796102 133796268 -28803662 - MER5B DNA MER1_type 0 178 35 768 173 0 8 chrX 133796268 133796401 -28803529 + FLAM_C SINE Alu 1 132 -11 306 120 20 0 chrX 133796415 133796465 -28803465 - MER5B DNA MER1_type -125 53 3 1973 172 37 34 chrX 133797122 133797672 -28802258 + MLT2A2 LTR ERVL 1 554 0 331 259 201 14 chrX 133797672 133797815 -28802115 + MIR3 SINE MIR 8 187 -21 22 35 0 0 chrX 133798422 133798451 -28801479 + AT_rich Low_complexity Low_complexity 1 29 0 227 356 89 7 chrX 133799409 133799555 -28800375 - MIR SINE MIR -97 165 8 27 0 0 0 chrX 133799658 133799685 -28800245 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chrX 133799776 133799811 -28800119 + AT_rich Low_complexity Low_complexity 1 35 0 195 100 0 0 chrX 133799967 133799997 -28799933 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 324 252 54 85 chrX 133800650 133800780 -28799150 - MIR SINE MIR -73 135 58 1677 155 82 20 chrX 133802997 133803339 -28796591 + MLT1A1 LTR MaLR 3 365 0 21 0 0 0 chrX 133804628 133804649 -28795281 + AT_rich Low_complexity Low_complexity 1 21 0 243 276 48 67 chrX 133804933 133805038 -28794892 - MIR SINE MIR -64 198 96 308 215 15 15 chrX 133805088 133805153 -28794777 + L2 LINE L2 3249 3313 0 244 214 0 18 chrX 133805553 133805609 -28794321 - L3 LINE CR1 0 1577 1523 255 226 19 0 chrX 133805654 133805707 -28794223 - MIR SINE MIR -122 86 33 613 279 71 33 chrX 133805908 133806148 -28793782 + MIR SINE MIR 8 256 -6 726 171 91 40 chrX 133806231 133806406 -28793524 - L2 LINE L2 -5 3308 3125 281 87 0 22 chrX 133807871 133807917 -28792013 + (TG)n Simple_repeat Simple_repeat 2 46 0 7778 212 89 19 chrX 133808011 133810008 -28789922 + L1MA8 LINE L1 460 2360 -5205 207 0 0 0 chrX 133810008 133810031 -28789899 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7778 212 89 19 chrX 133810031 133810622 -28789308 + L1MA8 LINE L1 2360 2908 -4657 581 203 7 13 chrX 133810627 133810780 -28789150 + L1MA8 LINE L1 3428 3579 -3986 * 3004 145 18 0 chrX 133810775 133811066 -28788864 + L1MA8 LINE L1 5893 6177 -1388 1557 141 0 0 chrX 133811066 133811300 -28788630 + MER46A DNA MER2_type 2 235 -1 3004 145 18 0 chrX 133811300 133811573 -28788357 + L1MA8 LINE L1 6177 6467 -1098 29766 107 16 58 chrX 133811594 133818009 -28781921 + L1PA7 LINE L1 13 6154 0 5970 122 30 7 chrX 133818007 133819231 -28780699 + L1MA8 LINE L1 6461 7710 0 * 4525 14 0 0 chrX 133819320 133819907 -28780023 + L1PA2 LINE L1 5637 6223 0 2012 140 0 7 chrX 133819918 133820226 -28779704 + AluJb SINE Alu 1 306 -6 1854 182 4 90 chrX 133820376 133820605 -28779325 + MER47B DNA MER2_type 1 173 -2150 2702 31 0 0 chrX 133820605 133820925 -28779005 + L1PA4 LINE L1 5836 6155 0 1854 182 4 90 chrX 133820925 133821152 -28778778 + MER47B DNA MER2_type 173 418 0 22 0 0 0 chrX 133821755 133821777 -28778153 + AT_rich Low_complexity Low_complexity 1 22 0 378 291 63 8 chrX 133822133 133822260 -28777670 - MIR3 SINE MIR -12 196 63 663 140 0 22 chrX 133822328 133822464 -28777466 - L1MB1 LINE L1 0 6168 6036 1220 274 97 14 chrX 133822684 133823424 -28776506 + L1ME3A LINE L1 5132 5940 -230 2099 204 21 63 chrX 133823663 133824237 -28775693 + MER44D DNA MER2_type 1 605 0 522 320 57 89 chrX 133825441 133825791 -28774139 + L2 LINE L2 2934 3272 0 218 240 48 77 chrX 133826081 133826185 -28773745 - MIR SINE MIR -71 191 91 673 303 50 25 chrX 133827382 133827623 -28772307 - MIR SINE MIR -15 247 1 983 304 0 4 chrX 133827746 133827993 -28771937 - MIR SINE MIR 0 262 17 743 308 0 5 chrX 133828057 133828242 -28771688 - MIR3 SINE MIR -9 199 16 818 294 143 48 chrX 133828288 133828771 -28771159 + L2 LINE L2 1124 1652 -1662 614 240 45 83 chrX 133828771 133829013 -28770917 + L2 LINE L2 2456 2688 -626 1551 187 97 92 chrX 133829017 133829451 -28770479 - MSTD LTR MaLR -5 391 17 791 266 126 40 chrX 133829456 133830016 -28769914 + L2 LINE L2 2682 3304 -9 447 19 0 0 chrX 133830553 133830605 -28769325 + (CA)n Simple_repeat Simple_repeat 2 53 0 399 21 0 0 chrX 133831146 133831194 -28768736 + (CA)n Simple_repeat Simple_repeat 1 48 0 412 133 0 0 chrX 133831500 133831560 -28768370 - L2 LINE L2 -5 3308 3249 558 173 14 86 chrX 133832033 133832172 -28767758 - L2 LINE L2 0 3313 3185 642 271 119 13 chrX 133833386 133833622 -28766308 - MIR SINE MIR 0 262 2 635 276 6 20 chrX 133833732 133833934 -28765996 + MIR3 SINE MIR 2 202 -6 537 333 34 25 chrX 133835556 133835793 -28764137 - L3 LINE CR1 -3 1574 1336 * 951 226 73 5 chrX 133835786 133835990 -28763940 + MIR SINE MIR 42 259 -3 217 234 0 0 chrX 133835995 133836042 -28763888 + (CTA)n Simple_repeat Simple_repeat 1 47 0 307 182 26 26 chrX 133836046 133836123 -28763807 - L3 LINE CR1 -260 1317 1241 2192 116 0 3 chrX 133836235 133836538 -28763392 + AluSq SINE Alu 3 304 -9 248 287 128 11 chrX 133836559 133836653 -28763277 + MIR SINE MIR 152 256 -6 393 246 147 71 chrX 133836663 133836874 -28763056 - L3 LINE CR1 -340 1237 1011 644 297 36 20 chrX 133837346 133837541 -28762389 + MIR3 SINE MIR 6 203 -5 23 54 0 0 chrX 133837972 133838009 -28761921 + AT_rich Low_complexity Low_complexity 1 37 0 387 0 0 0 chrX 133838657 133838700 -28761230 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1881 182 0 0 chrX 133838719 133839015 -28760915 + AluJb SINE Alu 1 296 -16 781 279 87 124 chrX 133840588 133841869 -28758061 + L2 LINE L2 1743 2975 -339 362 227 146 36 chrX 133842037 133842147 -28757783 + L2 LINE L2 3192 3313 0 224 200 18 0 chrX 133842524 133842579 -28757351 + GA-rich Low_complexity Low_complexity 1 56 0 2278 91 3 0 chrX 133843587 133843899 -28756031 - AluSp SINE Alu 0 313 1 2420 77 3 0 chrX 133844472 133844771 -28755159 - AluSp SINE Alu -13 300 1 622 48 0 0 chrX 133846163 133846247 -28753683 - AluSg/x SINE Alu -8 301 218 404 113 0 0 chrX 133846870 133846923 -28753007 + AluS SINE Alu 223 275 -37 274 60 20 20 chrX 133846927 133846977 -28752953 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 225 256 0 0 chrX 133847614 133847657 -28752273 - L2 LINE L2 -23 3290 3248 425 345 26 9 chrX 133847781 133847897 -28752033 + MIR3 SINE MIR 4 121 -87 210 259 37 19 chrX 133848152 133848206 -28751724 + MIR3 SINE MIR 151 205 -3 181 222 99 99 chrX 133848417 133848498 -28751432 + L2 LINE L2 3233 3313 0 956 114 0 0 chrX 133849448 133849571 -28750359 - AluJb SINE Alu -105 207 85 216 97 0 0 chrX 133849585 133849616 -28750314 + (T)n Simple_repeat Simple_repeat 1 31 0 708 200 129 110 chrX 133850411 133850721 -28749209 - L2 LINE L2 0 3313 2998 4759 209 215 22 chrX 133851057 133851330 -28748600 + L1MC/D LINE L1 34 253 -6287 2488 27 44 0 chrX 133851330 133851628 -28748302 + AluY SINE Alu 1 311 0 4759 209 215 22 chrX 133851628 133852836 -28747094 + L1MC/D LINE L1 253 1800 -4740 2688 188 58 74 chrX 133852829 133853735 -28746195 + L1MC/D LINE L1 4158 5049 -1491 * 1526 180 47 16 chrX 133853780 133854308 -28745622 + L1MC/D LINE L1 5451 5995 -641 2064 220 34 12 chrX 133854308 133854722 -28745208 + ERVL LTR ERVL 4474 4896 -868 690 257 125 0 chrX 133854854 133855142 -28744788 + L1ME2 LINE L1 3097 3420 -3120 * 1569 220 7 19 chrX 133855140 133855553 -28744377 + L1ME2 LINE L1 6089 6496 -62 1450 181 45 51 chrX 133855553 133855928 -28744002 + L1MA10 LINE L1 5933 6305 -29 2312 93 0 10 chrX 133856242 133856552 -28743378 - AluSx SINE Alu -5 307 1 204 40 0 0 chrX 133857053 133857078 -28742852 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 572 377 35 50 chrX 133857078 133857180 -28742750 - L2 LINE L2 -15 3257 3155 1977 104 14 35 chrX 133857180 133857509 -28742421 + AluSg SINE Alu 1 323 0 572 377 35 50 chrX 133857509 133857806 -28742124 - L2 LINE L2 -117 3155 2863 341 302 78 17 chrX 133857784 133857963 -28741967 - L2 LINE L2 -571 2743 2554 * 2316 220 67 35 chrX 133857989 133858096 -28741834 + L2 LINE L2 2009 2111 -1203 2246 92 7 3 chrX 133858096 133858391 -28741539 - AluSx SINE Alu -16 296 1 2316 220 67 35 chrX 133858391 133858937 -28740993 + L2 LINE L2 2111 2683 -631 4590 177 53 49 chrX 133858940 133860107 -28739823 + L1MA10 LINE L1 5161 6328 -6 1101 206 31 130 chrX 133860135 133860629 -28739301 + L2 LINE L2 2676 3070 -243 180 111 0 0 chrX 133860629 133860656 -28739274 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1101 206 31 130 chrX 133860656 133860878 -28739052 + L2 LINE L2 3070 3313 0 279 254 28 0 chrX 133861346 133861417 -28738513 - MIR3 SINE MIR -1 207 135 26 0 0 0 chrX 133862255 133862281 -28737649 + AT_rich Low_complexity Low_complexity 1 26 0 1264 228 126 31 chrX 133862316 133862698 -28737232 + MLT1F LTR MaLR 125 542 0 2012 144 7 0 chrX 133862866 133863164 -28736766 + AluSx SINE Alu 1 300 -12 21 36 0 0 chrX 133863174 133863202 -28736728 + AT_rich Low_complexity Low_complexity 1 28 0 325 279 0 72 chrX 133863716 133863827 -28736103 - L2 LINE L2 -19 3294 3192 423 374 154 20 chrX 133863844 133864736 -28735194 + L2 LINE L2 1959 2969 -345 5039 164 59 50 chrX 133865016 133866261 -28733669 - Charlie1a DNA MER1_type 0 1455 199 870 162 110 5 chrX 133866261 133866452 -28733478 + L1M4 LINE L1 5584 5794 -390 1110 195 40 22 chrX 133866454 133866680 -28733250 - Charlie1a DNA MER1_type -1225 230 1 568 341 104 16 chrX 133866751 133867068 -28732862 + L2 LINE L2 2142 2486 -828 272 218 127 0 chrX 133867174 133867229 -28732701 - Charlie8 DNA MER1_type -2354 63 2 394 324 46 99 chrX 133867236 133867609 -28732321 + L2 LINE L2 2530 2882 -432 605 175 61 0 chrX 133867648 133867762 -28732168 - MIR SINE MIR -31 231 111 358 282 65 0 chrX 133867810 133867934 -28731996 + L2 LINE L2 2927 3058 -214 507 138 0 0 chrX 133869010 133869097 -28730833 + (GA)n Simple_repeat Simple_repeat 1 87 0 216 200 33 33 chrX 133870680 133870720 -28729210 + GA-rich Low_complexity Low_complexity 1 43 -17 7125 52 3 0 chrX 133870720 133872191 -28727739 + L1PA7 LINE L1 4681 6154 0 216 200 33 33 chrX 133872191 133872210 -28727720 + GA-rich Low_complexity Low_complexity 42 60 0 215 360 18 0 chrX 133872846 133873010 -28726920 + (CA)n Simple_repeat Simple_repeat 2 168 0 3557 195 27 30 chrX 133873405 133874776 -28725154 + L1MB7 LINE L1 4613 6175 -9 203 214 0 24 chrX 133874792 133874834 -28725096 + L3 LINE CR1 1233 1273 -304 403 284 60 91 chrX 133874895 133875180 -28724750 + L3 LINE CR1 1291 1566 -11 234 62 0 0 chrX 133877571 133877603 -28722327 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 829 194 19 28 chrX 133879191 133879402 -28720528 - MER3 DNA MER1_type 0 209 1 492 272 104 12 chrX 133879540 133879713 -28720217 - MER5A DNA MER1_type 0 189 1 223 323 158 8 chrX 133880087 133880214 -28719716 - L2 LINE L2 -25 3247 3102 856 248 48 24 chrX 133880979 133881229 -28718701 + MIR SINE MIR 1 256 -6 2110 125 0 0 chrX 133881233 133881545 -28718385 - AluSq SINE Alu 0 312 1 312 133 0 0 chrX 133882858 133882918 -28717012 + (GA)n Simple_repeat Simple_repeat 1 60 0 344 267 125 34 chrX 133883416 133883592 -28716338 + MIR SINE MIR 20 211 -51 662 257 15 59 chrX 133886508 133886710 -28713220 + MIR SINE MIR 20 212 -50 254 292 0 14 chrX 133887688 133887760 -28712170 + GA-rich Low_complexity Low_complexity 3 73 0 423 289 108 30 chrX 133888895 133889061 -28710869 + MIR3 SINE MIR 18 196 -12 742 171 0 0 chrX 133889193 133889330 -28710600 + FLAM_C SINE Alu 1 137 0 884 123 0 0 chrX 133889625 133889747 -28710183 - FRAM SINE Alu -2 174 53 410 276 105 0 chrX 133889760 133889865 -28710065 - MIR SINE MIR -113 149 34 511 302 135 18 chrX 133890019 133890241 -28709689 + MIR SINE MIR 1 248 -14 386 244 92 6 chrX 133890984 133891148 -28708782 + L1MC4 LINE L1 7864 8041 -1 498 247 59 5 chrX 133891164 133891350 -28708580 + L1MC4 LINE L1 7847 8042 0 321 188 0 62 chrX 133891482 133891562 -28708368 - L2 LINE L2 -13 3300 3226 259 396 43 6 chrX 133891622 133891786 -28708144 - L2 LINE L2 -433 2881 2712 578 27 0 13 chrX 133892343 133892418 -28707512 - L1P3 LINE L1 -490 5664 5591 620 23 12 23 chrX 133892418 133892503 -28707427 + L1PA8 LINE L1 6088 6172 0 275 261 15 69 chrX 133892516 133892646 -28707284 + L1MC4 LINE L1 7768 7890 -152 260 123 18 0 chrX 133892654 133892711 -28707219 + L1MC4 LINE L1 7985 8042 0 558 311 71 74 chrX 133892782 133893349 -28706581 + L2 LINE L2 2716 3272 0 217 233 67 17 chrX 133894705 133894765 -28705165 + L2 LINE L2 3250 3312 -1 221 273 0 0 chrX 133895645 133895711 -28704219 + MIR SINE MIR 124 189 -73 182 289 0 0 chrX 133895767 133895812 -28704118 - MIR SINE MIR -8 254 210 406 303 126 34 chrX 133895853 133896091 -28703839 - L2 LINE L2 -480 2834 2575 2349 84 0 3 chrX 133896147 133896443 -28703487 - AluSx SINE Alu -17 295 1 965 243 50 75 chrX 133896457 133896611 -28703319 - L1ME4a LINE L1 -16 6105 5949 324 70 0 0 chrX 133896611 133896654 -28703276 + (TG)n Simple_repeat Simple_repeat 2 44 0 965 243 50 75 chrX 133896654 133897096 -28702834 - L1ME4a LINE L1 -172 5949 5524 616 236 23 155 chrX 133897470 133897779 -28702151 - L2 LINE L2 -5 3267 3000 352 228 50 0 chrX 133898289 133898390 -28701540 + MER113 DNA MER1_type? 1 106 -415 262 252 49 94 chrX 133898625 133898911 -28701019 + L2 LINE L2 2819 3091 -181 515 341 97 26 chrX 133899402 133899628 -28700302 + MIR SINE MIR 21 262 0 316 270 87 9 chrX 133902483 133902598 -28697332 - L2 LINE L2 -8 3305 3182 1862 169 0 25 chrX 133903126 133903446 -28696484 + AluJb SINE Alu 1 312 0 262 298 24 12 chrX 133903617 133903701 -28696229 - L2 LINE L2 -2 3270 3186 754 326 8 70 chrX 133903748 133904091 -28695839 - L2 LINE L2 -810 2504 2200 2151 108 0 10 chrX 133904091 133904387 -28695543 - AluSx SINE Alu -19 293 1 754 326 8 70 chrX 133904387 133904546 -28695384 - L2 LINE L2 -1114 2200 2033 654 251 33 11 chrX 133904607 133904790 -28695140 - L2 LINE L2 -1 3312 3126 24 0 0 0 chrX 133904887 133904911 -28695019 + AT_rich Low_complexity Low_complexity 1 24 0 193 183 33 0 chrX 133904946 133905006 -28694924 + (TA)n Simple_repeat Simple_repeat 1 62 0 2220 101 3 22 chrX 133908766 133909082 -28690848 - AluSq SINE Alu -3 310 1 403 262 82 52 chrX 133909271 133909446 -28690484 - MIR SINE MIR -62 146 3 2133 124 3 13 chrX 133909574 133909888 -28690042 - AluSx SINE Alu -1 311 1 322 231 0 0 chrX 133909888 133909953 -28689977 + MIR SINE MIR 151 215 -47 380 292 54 15 chrX 133909956 133910086 -28689844 - MIR SINE MIR -95 167 33 707 220 48 5 chrX 133910649 133910835 -28689095 + L1M4c LINE L1 1222 1415 -4969 838 226 117 7 chrX 133911273 133911547 -28688383 + MER46C DNA MER2_type 31 334 -4 419 100 14 0 chrX 133911882 133911952 -28687978 + (CTA)n Simple_repeat Simple_repeat 1 71 0 546 279 6 42 chrX 133911995 133912160 -28687770 - MIR SINE MIR -47 215 57 495 274 80 29 chrX 133912557 133912732 -28687198 - MER5A DNA MER1_type 0 189 6 482 270 116 34 chrX 133912733 133912966 -28686964 + MIR SINE MIR 6 257 -5 196 339 18 0 chrX 133913412 133913468 -28686462 - L2 LINE L2 -89 3183 3127 200 279 59 0 chrX 133913469 133913537 -28686393 + MIR3 SINE MIR 85 156 -52 498 248 8 8 chrX 133914081 133914206 -28685724 - MIR SINE MIR -21 241 117 1954 97 47 14 chrX 133914244 133914541 -28685389 - AluSx SINE Alu 0 312 1 246 254 123 26 chrX 133915424 133915538 -28684392 - MIR SINE MIR -25 237 113 562 275 28 28 chrX 133916080 133916262 -28683668 - MIR SINE MIR -17 245 64 854 203 29 48 chrX 133916334 133916644 -28683286 - L1MC5 LINE L1 -48 7913 7610 2163 110 59 34 chrX 133916670 133917025 -28682905 - THE1B LTR MaLR 0 364 1 11979 82 14 0 chrX 133917025 133918584 -28681346 - THE1B-int LTR MaLR 0 1580 1 2266 109 48 28 chrX 133918584 133918941 -28680989 - THE1B LTR MaLR 0 364 1 487 231 49 74 chrX 133919047 133919250 -28680680 - L1ME LINE L1 -579 5583 5386 2932 236 81 76 chrX 133919296 133920598 -28679332 - L1ME LINE L1 -849 5297 3985 2417 119 11 16 chrX 133920598 133920975 -28678955 + THE1C LTR MaLR 1 375 0 2932 236 81 76 chrX 133920975 133921199 -28678731 - L1ME LINE L1 -2161 3985 3764 339 25 0 0 chrX 133921260 133921300 -28678630 + (TC)n Simple_repeat Simple_repeat 2 41 0 1851 135 4 11 chrX 133921300 133921574 -28678356 - AluJb SINE Alu -27 285 14 1196 287 46 18 chrX 133921710 133922385 -28677545 - L1ME LINE L1 -2981 3165 2467 1392 0 0 0 chrX 133922385 133922539 -28677391 + L1PA2 LINE L1 5997 6150 -5 1196 287 46 18 chrX 133922539 133922584 -28677346 - L1ME LINE L1 -3679 2467 2425 409 254 133 25 chrX 133922671 133922911 -28677019 - L1ME LINE L1 -3733 2413 2148 2465 227 51 24 chrX 133922925 133923734 -28676196 - L1ME3 LINE L1 -14 6148 5318 2112 187 34 24 chrX 133923747 133924250 -28675680 - L1ME1 LINE L1 -5 6161 5654 228 189 19 0 chrX 133924250 133924303 -28675627 + (TA)n Simple_repeat Simple_repeat 2 55 0 536 201 9 3 chrX 133924328 133924478 -28675452 + L1M4 LINE L1 5644 5791 -383 297 197 0 0 chrX 133924482 133924543 -28675387 + (TA)n Simple_repeat Simple_repeat 1 61 0 619 238 271 2 chrX 133924543 133924721 -28675209 - L1ME1 LINE L1 -497 5669 5540 2289 97 3 7 chrX 133924721 133925029 -28674901 - AluSx SINE Alu -5 307 1 619 238 271 2 chrX 133925029 133925238 -28674692 - L1ME1 LINE L1 -626 5540 5188 * 186 43 0 0 chrX 133925239 133925262 -28674668 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 5564 109 6 36 chrX 133925262 133926238 -28673692 - L1MA5A LINE L1 -7 6290 5346 212 322 17 0 chrX 133926362 133926421 -28673509 - MIR3 SINE MIR -52 156 97 241 307 44 53 chrX 133926454 133926568 -28673362 - MIR SINE MIR -148 114 2 343 322 33 0 chrX 133926607 133926697 -28673233 + MER82 DNA MER2_type 451 543 -110 5077 240 34 26 chrX 133926698 133927628 -28672302 + L1MD1 LINE L1 2346 3298 -2848 2174 128 0 3 chrX 133927628 133927933 -28671997 + AluJb SINE Alu 1 304 -8 5077 240 34 26 chrX 133927933 133928679 -28671251 + L1MD1 LINE L1 3298 4036 -2110 3723 202 54 9 chrX 133928677 133929495 -28670435 + L1MD1 LINE L1 5381 6235 -7 * 233 111 44 0 chrX 133929671 133929716 -28670214 + (CACCAT)n Simple_repeat Simple_repeat 1 47 0 396 318 14 22 chrX 133930130 133930353 -28669577 - HAL1b LINE L1 -848 500 280 1068 241 38 88 chrX 133930689 133931087 -28668843 + MLT2C1 LTR ERVL 20 397 0 1427 160 72 102 chrX 133931191 133931634 -28668296 + L1MC3 LINE L1 6797 7226 -559 557 205 179 71 chrX 133931664 133931888 -28668042 - MLT1E2 LTR MaLR -368 258 11 922 134 333 70 chrX 133931899 133931937 -28667993 + MER45R DNA AcHobo 917 944 -637 1895 140 7 29 chrX 133931937 133932244 -28667686 + AluSx SINE Alu 1 300 -12 922 134 333 70 chrX 133932244 133932430 -28667500 + MER45R DNA AcHobo 944 1080 -501 2393 78 10 3 chrX 133932430 133932738 -28667192 + AluY SINE Alu 2 311 0 922 134 333 70 chrX 133932738 133932915 -28667015 + MER45R DNA AcHobo 1080 1425 -156 336 189 79 94 chrX 133932922 133932955 -28666975 + MLT1E1 LTR MaLR 159 191 -463 339 244 12 12 chrX 133932955 133933041 -28666889 + MLT2C1 LTR ERVL 124 209 -188 735 160 39 6 chrX 133933051 133933207 -28666723 + MER45R DNA AcHobo 1414 1574 -7 3477 215 112 72 chrX 133933215 133933308 -28666622 + L1ME2 LINE L1 3665 3753 -2411 2148 110 0 20 chrX 133933308 133933608 -28666322 + AluSg SINE Alu 1 294 -16 636 106 0 0 chrX 133933609 133933703 -28666227 + (TA)n Simple_repeat Simple_repeat 1 94 0 3477 215 112 72 chrX 133933703 133934926 -28665004 + L1ME2 LINE L1 3753 5085 -1079 2185 127 14 0 chrX 133934926 133935280 -28664650 + L1MA5 LINE L1 5940 6298 -2 3477 215 112 72 chrX 133935280 133935829 -28664101 + L1ME2 LINE L1 5085 5610 -554 2674 192 13 46 chrX 133935837 133936359 -28663571 - MLT2B2 LTR ERVL -10 505 1 783 235 16 23 chrX 133936364 133936749 -28663181 + L1ME2 LINE L1 5611 6154 -10 27 87 0 0 chrX 133936795 133936864 -28663066 + AT_rich Low_complexity Low_complexity 1 69 0 925 79 0 40 chrX 133936864 133936990 -28662940 + AluSg/x SINE Alu 172 292 -18 820 256 85 45 chrX 133937025 133937557 -28662373 + L1M4 LINE L1 3225 3777 -2369 384 247 0 0 chrX 133937598 133937683 -28662247 - MER82 DNA MER2_type -568 85 1 2120 161 9 3 chrX 133937693 133938029 -28661901 + MER2 DNA MER2_type 1 338 -7 4517 189 60 15 chrX 133938040 133939153 -28660777 - L1MDa LINE L1 -4223 2317 1155 1832 48 0 0 chrX 133939153 133939381 -28660549 + L1PA7 LINE L1 5926 6153 -1 5574 156 23 22 chrX 133939381 133940357 -28659573 - L1MA9 LINE L1 -39 6273 5294 228 35 0 0 chrX 133940357 133940386 -28659544 + (TA)n Simple_repeat Simple_repeat 1 29 0 5574 156 23 22 chrX 133940386 133940419 -28659511 - L1MA9 LINE L1 -1018 5294 5263 305 197 15 0 chrX 133940416 133940482 -28659448 - L1MC5 LINE L1 -929 7032 6966 * 846 227 41 0 chrX 133940496 133940668 -28659262 - AluJo/FRAM SINE Alu 0 312 134 1072 139 6 12 chrX 133940668 133940833 -28659097 - FRAM SINE Alu -10 166 3 464 175 15 111 chrX 133940857 133941052 -28658878 - L1MC5 LINE L1 -834 6951 6807 1184 281 114 48 chrX 133941107 133941449 -28658481 - L1MC4a LINE L1 -1017 6791 6473 1819 167 16 27 chrX 133941449 133941815 -28658115 + MLT1A1 LTR MaLR 4 365 0 1184 281 114 48 chrX 133941815 133942402 -28657528 - L1MC4a LINE L1 -1335 6473 5801 29 0 0 0 chrX 133942834 133942863 -28657067 + AT_rich Low_complexity Low_complexity 1 29 0 207 306 28 14 chrX 133942964 133943097 -28656833 - MIR SINE MIR -64 198 63 919 201 112 59 chrX 133943319 133943779 -28656151 - MLT1F1 LTR MaLR -5 562 1 985 205 60 47 chrX 133943800 133944034 -28655896 - MIR SINE MIR -25 237 1 720 306 21 59 chrX 133944037 133944374 -28655556 - L2 LINE L2 -163 3150 2827 400 304 112 13 chrX 133944397 133944621 -28655309 + L1M4b LINE L1 29 274 -6585 724 196 74 84 chrX 133944949 133945234 -28654696 + L1M4b LINE L1 930 1211 -5648 3006 199 60 7 chrX 133945452 133945520 -28654410 + L1M4b LINE L1 1193 1256 -5599 180 111 0 0 chrX 133945520 133945547 -28654383 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3006 199 60 7 chrX 133945547 133946206 -28653724 + L1M4b LINE L1 1256 1959 -4896 669 317 6 0 chrX 133946336 133946497 -28653433 + MER91A DNA MER1_type 2 163 -33 351 278 103 0 chrX 133946509 133946606 -28653324 + MER91A DNA MER1_type 90 196 0 557 287 47 0 chrX 133946868 133947018 -28652912 + MIR SINE MIR 79 235 -27 6570 5 0 0 chrX 133947023 133947757 -28652173 - L1HS LINE L1 0 6155 5422 282 331 59 29 chrX 133948061 133948197 -28651733 - MER5A DNA MER1_type -10 179 40 203 229 0 0 chrX 133948667 133948702 -28651228 + polypyrimidine Low_complexity Low_complexity 3 37 0 202 273 102 23 chrX 133949380 133949508 -28650422 + L2 LINE L2 2131 2268 -1046 909 217 51 43 chrX 133949524 133949777 -28650153 + L2 LINE L2 2446 2700 -614 2303 173 78 19 chrX 133949782 133950308 -28649622 - L1MD2 LINE L1 -8 6351 5795 967 180 88 71 chrX 133950320 133950614 -28649316 - MLT1C LTR MaLR 0 467 169 1480 213 55 19 chrX 133950620 133950982 -28648948 - LTR55 LTR ERV -173 375 1 6167 239 49 59 chrX 133950983 133954216 -28645714 - L1MD2 LINE L1 -734 5625 2450 920 284 35 35 chrX 133954216 133954285 -28645645 + L2 LINE L2 2689 2757 -557 2201 70 0 0 chrX 133954285 133954557 -28645373 + AluY SINE Alu 36 307 -4 920 284 35 35 chrX 133954557 133954776 -28645154 + L2 LINE L2 2756 2977 -337 180 297 81 14 chrX 133954820 133954894 -28645036 - MIR SINE MIR -123 139 61 1032 211 39 5 chrX 133955380 133955588 -28644342 + MER58A DNA MER1_type 10 224 0 898 296 83 50 chrX 133955616 133956095 -28643835 - MLT1G1 LTR MaLR -8 587 93 236 91 23 0 chrX 133956882 133956926 -28643004 + (TC)n Simple_repeat Simple_repeat 2 46 0 348 24 0 0 chrX 133956926 133956967 -28642963 + (CA)n Simple_repeat Simple_repeat 1 41 0 43055 30 22 1 chrX 133957066 133963092 -28636838 + L1PA2 LINE L1 1 6154 -1 289 295 0 13 chrX 133963189 133963267 -28636663 + GA-rich Low_complexity Low_complexity 2 78 0 2177 173 20 41 chrX 133963407 133963898 -28636032 - MER31A LTR ERV1 -4 481 1 241 341 9 121 chrX 133963900 133964123 -28635807 + L2 LINE L2 3025 3222 -50 940 279 21 4 chrX 133965868 133966105 -28633825 - MIR SINE MIR -20 242 2 209 264 57 0 chrX 133966131 133966184 -28633746 - MIR SINE MIR -80 128 73 181 333 20 0 chrX 133966323 133966374 -28633556 - L2 LINE L2 -11 3261 3210 202 154 0 0 chrX 133966392 133966431 -28633499 - L2 LINE L2 0 3313 3275 2783 146 22 12 chrX 133966435 133966943 -28632987 + L1MB7 LINE L1 5663 6175 -9 211 347 27 0 chrX 133966953 133967028 -28632902 + L2 LINE L2 3016 3092 -180 640 314 124 41 chrX 133967229 133967617 -28632313 - L2 LINE L2 -9 3263 2844 7327 145 18 10 chrX 133967854 133969123 -28630807 - Ricksha_c DNA DNA -13 2033 812 1726 140 104 0 chrX 133969112 133969391 -28630539 - Ricksha_c DNA DNA -1719 327 20 * 510 290 46 74 chrX 133969392 133969758 -28630172 - L2 LINE L2 -767 2547 2192 199 235 259 35 chrX 133969742 133969827 -28630103 + L2 LINE L2 3168 3271 -1 * 717 262 167 0 chrX 133969908 133970129 -28629801 - MIR SINE MIR -2 260 3 521 236 0 40 chrX 133970293 133970343 -28629587 + L1ME4a LINE L1 4912 4962 -1184 1728 201 94 3 chrX 133970343 133970706 -28629224 + MSTD LTR MaLR 1 396 0 521 236 0 40 chrX 133970706 133970803 -28629127 + L1ME4a LINE L1 4962 5053 -1093 378 209 44 0 chrX 133970812 133970903 -28629027 - L1M4 LINE L1 -1195 5449 5355 * 2653 224 10 20 chrX 133970902 133971492 -28628438 - L1M4 LINE L1 -5945 597 14 7436 201 27 19 chrX 133971495 133972994 -28626936 - L1M4b LINE L1 -5303 1556 47 3559 162 30 12 chrX 133973274 133973940 -28625990 + L1MC3 LINE L1 7108 7785 0 328 287 115 8 chrX 133974107 133974229 -28625701 + L1ME4a LINE L1 5617 5751 -370 323 145 96 24 chrX 133974301 133974384 -28625546 - MER103 DNA DNA -23 143 55 312 300 67 13 chrX 133974509 133974659 -28625271 + L1ME4a LINE L1 5765 5922 -199 336 245 122 0 chrX 133974672 133974819 -28625111 + L1ME4a LINE L1 5957 6121 0 195 100 0 0 chrX 133975551 133975581 -28624349 + (ATATG)n Simple_repeat Simple_repeat 1 30 0 430 310 14 14 chrX 133975582 133975727 -28624203 + MIR3 SINE MIR 13 157 -51 826 272 177 40 chrX 133975733 133975989 -28623941 + L2 LINE L2 2748 2968 -345 2865 156 32 0 chrX 133975989 133976432 -28623498 + MSTB2 LTR MaLR 1 457 0 826 272 177 40 chrX 133976432 133976685 -28623245 + L2 LINE L2 2968 3311 -2 676 213 25 31 chrX 133976717 133976877 -28623053 - MIR SINE MIR -28 234 76 459 285 126 6 chrX 133976853 133977045 -28622885 - MIR SINE MIR -31 231 20 * 3455 111 17 2 chrX 133977093 133977571 -28622359 - L1PB3 LINE L1 -2 6152 5668 248 224 75 15 chrX 133978208 133978275 -28621655 + MER91C DNA MER1_type 33 103 -37 6689 74 28 10 chrX 133978389 133978425 -28621505 + L1MA1 LINE L1 5367 5401 -901 1852 105 0 0 chrX 133978425 133978672 -28621258 + AluSq SINE Alu 1 247 -66 6689 74 28 10 chrX 133978672 133979554 -28620376 + L1MA1 LINE L1 5401 6302 0 445 309 46 0 chrX 133980140 133980292 -28619638 - MIR SINE MIR -51 211 53 306 259 117 22 chrX 133980725 133980887 -28619043 + MIR SINE MIR 31 247 -15 1108 187 24 5 chrX 133981389 133981598 -28618332 + L1MA9 LINE L1 6016 6228 -84 1847 165 6 74 chrX 133981599 133981962 -28617968 - MER2 DNA MER2_type 0 345 8 378 146 61 12 chrX 133981962 133982044 -28617886 + L1MA9 LINE L1 6222 6307 -5 430 290 48 28 chrX 133982048 133982193 -28617737 + MIR SINE MIR 20 167 -95 400 228 13 13 chrX 133982191 133982270 -28617660 - L2 LINE L2 0 3272 3194 * 219 347 88 27 chrX 133982378 133982525 -28617405 - L2 LINE L2 -787 2527 2372 426 294 64 5 chrX 133982570 133982776 -28617154 - MIR SINE MIR -21 241 20 3592 161 31 45 chrX 133983752 133984226 -28615704 - L1MA9 LINE L1 -39 6273 5794 519 17 0 0 chrX 133984226 133984286 -28615644 + (CA)n Simple_repeat Simple_repeat 2 61 0 3592 161 31 45 chrX 133984286 133984323 -28615607 - L1MA9 LINE L1 -518 5794 5758 2057 69 4 29 chrX 133984323 133984597 -28615333 - L1PA13 LINE L1 -8 6155 5889 3592 161 31 45 chrX 133984597 133984822 -28615108 - L1MA9 LINE L1 -554 5758 5546 1196 289 53 40 chrX 133984954 133985422 -28614508 - MLT1J LTR MaLR -8 503 1 378 0 0 0 chrX 133985918 133985960 -28613970 + (TA)n Simple_repeat Simple_repeat 2 43 0 1894 109 19 0 chrX 133986784 133987051 -28612879 + L1PA16 LINE L1 5895 6166 0 381 207 0 0 chrX 133987161 133987243 -28612687 + (TA)n Simple_repeat Simple_repeat 2 83 0 282 264 35 0 chrX 133987243 133987330 -28612600 - L1MC4 LINE L1 -1339 6703 6614 239 198 21 94 chrX 133987245 133987341 -28612589 + L1MC4 LINE L1 6614 6702 -1340 * 413 159 0 11 chrX 133987343 133987431 -28612499 + (TA)n Simple_repeat Simple_repeat 1 87 0 265 346 0 16 chrX 133987433 133987560 -28612370 + GA-rich Low_complexity Low_complexity 2 126 0 477 117 0 68 chrX 133988212 133988315 -28611615 - L1MA7 LINE L1 -5 6286 6191 2853 125 42 21 chrX 133988322 133988373 -28611557 + L1MA7 LINE L1 5728 5776 -515 261 0 0 0 chrX 133988373 133988402 -28611528 + (CA)n Simple_repeat Simple_repeat 1 29 0 2853 125 42 21 chrX 133988402 133988829 -28611101 + L1MA7 LINE L1 5776 6216 -75 578 267 93 6 chrX 133988966 133989138 -28610792 - MIR SINE MIR -72 190 4 860 208 34 68 chrX 133989825 133990061 -28609869 - MIR SINE MIR -24 238 11 953 243 20 8 chrX 133990536 133990783 -28609147 - MIR SINE MIR 0 262 13 180 342 44 18 chrX 133990835 133990949 -28608981 - MIR3 SINE MIR -41 167 51 272 202 183 39 chrX 133990976 133991080 -28608850 + L2 LINE L2 3154 3272 0 749 35 0 0 chrX 133991410 133991496 -28608434 + L1PA6 LINE L1 6061 6146 -8 27 0 0 0 chrX 133991496 133991523 -28608407 + AT_rich Low_complexity Low_complexity 1 27 0 842 233 81 47 chrX 133991535 133991771 -28608159 - MIR SINE MIR -16 246 3 416 272 8 16 chrX 133991872 133991997 -28607933 - L2 LINE L2 -939 2375 2252 1015 231 13 22 chrX 133992015 133992244 -28607686 - MIR SINE MIR 0 262 36 279 248 221 0 chrX 133992245 133992358 -28607572 + MIR SINE MIR 112 249 -13 402 292 18 0 chrX 133992537 133992650 -28607280 + MIR SINE MIR 145 259 -3 655 295 107 0 chrX 133993168 133993402 -28606528 + MIR SINE MIR 1 259 -3 216 97 0 0 chrX 133993805 133993836 -28606094 + (CA)n Simple_repeat Simple_repeat 1 31 0 293 258 30 0 chrX 133994428 133994494 -28605436 - L2 LINE L2 -4 3309 3242 569 217 0 56 chrX 133994560 133994703 -28605227 - MIR SINE MIR -22 240 106 1688 200 73 36 chrX 133994710 133995149 -28604781 + MLT1C LTR MaLR 1 467 0 223 316 0 0 chrX 133995157 133995214 -28604716 - MIR SINE MIR -193 69 13 485 258 0 39 chrX 133995295 133995423 -28604507 + MIR3 SINE MIR 86 208 0 436 270 70 0 chrX 133996574 133996689 -28603241 + MIR SINE MIR 118 240 -22 842 304 156 23 chrX 133996695 133997380 -28602550 + L2 LINE L2 2293 3082 -190 634 240 33 33 chrX 133997876 133998059 -28601871 - MIR SINE MIR -6 256 74 592 309 59 9 chrX 133998072 133998292 -28601638 - MIR SINE MIR -12 250 20 365 238 12 0 chrX 133999520 133999600 -28600330 - L1ME3 LINE L1 -111 6051 5971 669 200 32 0 chrX 133999600 133999725 -28600205 - MER5A DNA MER1_type -27 162 34 1328 194 59 128 chrX 133999784 134000031 -28599899 - L1ME3 LINE L1 -265 5905 5643 1541 133 0 17 chrX 134000031 134000265 -28599665 - L1PA10 LINE L1 0 6168 5939 1328 194 59 128 chrX 134000265 134000520 -28599410 - L1ME3 LINE L1 -527 5643 5438 207 0 0 0 chrX 134000520 134000543 -28599387 + (TG)n Simple_repeat Simple_repeat 2 24 0 1328 194 59 128 chrX 134000543 134000564 -28599366 - L1ME3 LINE L1 -732 5438 5417 466 391 20 0 chrX 134000862 134001110 -28598820 - L2 LINE L2 -385 2929 2677 414 131 0 0 chrX 134001114 134001175 -28598755 - MER5B DNA MER1_type 0 178 118 19852 19 0 0 chrX 134001175 134003450 -28596480 - L1HS LINE L1 -1188 4958 2684 8202 14 0 0 chrX 134003441 134004655 -28595275 + L1HS LINE L1 4942 6155 0 * 24 32 0 0 chrX 134004655 134004686 -28595244 + AT_rich Low_complexity Low_complexity 1 31 0 361 254 0 0 chrX 134004692 134004763 -28595167 - MER5B DNA MER1_type -48 130 60 502 289 46 25 chrX 134004767 134005006 -28594924 - L2 LINE L2 -744 2570 2327 451 312 70 6 chrX 134005435 134005592 -28594338 - MIR SINE MIR -37 225 59 278 293 47 11 chrX 134005851 134005974 -28593956 - MIR SINE MIR -23 185 52 254 286 22 22 chrX 134006480 134006571 -28593359 - MIR SINE MIR -11 251 161 237 167 0 0 chrX 134006575 134006611 -28593319 - L2 LINE L2 -17 3255 3220 393 158 0 32 chrX 134006611 134006706 -28593224 + (TA)n Simple_repeat Simple_repeat 2 93 0 478 101 0 22 chrX 134006935 134007024 -28592906 + (TA)n Simple_repeat Simple_repeat 2 88 0 234 0 0 0 chrX 134007024 134007050 -28592880 + (GA)n Simple_repeat Simple_repeat 2 27 0 283 235 24 35 chrX 134007057 134007101 -28592829 - MIR SINE MIR -75 187 143 2141 155 119 13 chrX 134007101 134007488 -28592442 + MSTA LTR MaLR 1 428 0 283 235 24 35 chrX 134007488 134007528 -28592402 - MIR SINE MIR -119 143 104 578 237 46 15 chrX 134007535 134007666 -28592264 - L2 LINE L2 -4 3268 3134 185 289 0 0 chrX 134008086 134008131 -28591799 - L2 LINE L2 -19 3253 3209 390 254 8 15 chrX 134008374 134008508 -28591422 + GA-rich Low_complexity Low_complexity 1 133 0 240 250 53 129 chrX 134008952 134009084 -28590846 + MIR3 SINE MIR 35 156 -52 375 312 7 57 chrX 134009834 134009975 -28589955 + L2 LINE L2 3139 3272 0 215 283 113 0 chrX 134010097 134010150 -28589780 + L2 LINE L2 3153 3211 -61 1540 258 93 16 chrX 134010242 134011011 -28588919 - L2 LINE L2 -7 3306 2480 237 143 24 0 chrX 134011012 134011054 -28588876 + L2 LINE L2 3017 3059 -213 1179 234 33 0 chrX 134011756 134012030 -28587900 - L1ME3 LINE L1 -2 6160 5878 430 244 23 30 chrX 134012030 134012161 -28587769 + MIR SINE MIR 92 221 -41 673 310 34 29 chrX 134012411 134012650 -28587280 + MIR SINE MIR 5 244 -18 2330 159 11 8 chrX 134013061 134013438 -28586492 - L1MC1 LINE L1 -16 6317 5940 676 305 115 28 chrX 134014073 134014463 -28585467 + L1ME LINE L1 5383 5806 -364 1632 173 75 26 chrX 134014497 134014675 -28585255 - MLT1A2 LTR MaLR -11 363 195 252 0 0 0 chrX 134014675 134014703 -28585227 + (GA)n Simple_repeat Simple_repeat 2 29 0 1632 173 75 26 chrX 134014703 134014870 -28585060 - MLT1A2 LTR MaLR -179 195 1 1473 157 0 0 chrX 134014870 134015099 -28584831 - MLT1A2-int LTR MaLR 0 1735 1507 210 321 124 0 chrX 134015140 134015277 -28584653 + L3 LINE CR1 1160 1313 -264 272 326 0 0 chrX 134015372 134015467 -28584463 - MIR SINE MIR -11 251 157 714 168 63 7 chrX 134016831 134016974 -28582956 - L1MA10 LINE L1 -2 6332 6182 10371 217 64 13 chrX 134017002 134020305 -28579625 - L1ME2 LINE L1 -163 6395 2894 2745 157 26 0 chrX 134020305 134020726 -28579204 + MSTB1 LTR MaLR 1 432 0 10371 217 64 13 chrX 134020726 134020941 -28578989 - L1ME2 LINE L1 -3664 2894 2691 768 266 68 51 chrX 134020938 134021505 -28578425 - L1ME2 LINE L1 -4661 1879 1348 * 339 284 148 6 chrX 134021507 134021669 -28578261 + L2 LINE L2 2130 2314 -1000 620 85 0 0 chrX 134221790 134221872 -28378058 - AluS SINE Alu -229 84 3 463 296 50 64 chrX 134221990 134222239 -28377691 - L1MEd LINE L1 -5040 1490 1239 1546 181 32 7 chrX 134222239 134222520 -28377410 + AluJb SINE Alu 1 288 -24 463 296 50 64 chrX 134222520 134222852 -28377078 - L1MEd LINE L1 -5291 1239 917 3954 123 42 20 chrX 134223260 134223991 -28375939 - Tigger3(Golem) DNA MER2_type -1 3028 2282 741 164 0 0 chrX 134223974 134224096 -28375834 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 229 345 82 24 chrX 134224143 134224349 -28375581 + L2 LINE L2 1823 2040 -1274 434 321 72 35 chrX 134224397 134224687 -28375243 + L2 LINE L2 2551 2851 -463 2461 84 3 0 chrX 134225136 134225447 -28374483 - AluSp SINE Alu -1 312 1 2150 165 22 3 chrX 134225471 134225829 -28374101 + MLT1A1 LTR MaLR 1 365 0 1470 201 3 0 chrX 134227087 134227386 -28372544 - L1M4 LINE L1 -1154 4992 4693 603 173 36 124 chrX 134227385 134227634 -28372296 - L1M4 LINE L1 -1714 4432 4206 * 669 221 17 22 chrX 134227615 134227796 -28372134 + L1M4 LINE L1 3484 3663 -2483 * 2935 215 29 14 chrX 134227784 134228434 -28371496 - L1MEd LINE L1 -5863 677 18 1104 137 26 108 chrX 134228435 134228741 -28371189 + Tigger6 DNA MER2_type 1317 1597 0 2373 109 0 3 chrX 134228751 134229062 -28370868 - AluSx SINE Alu -2 310 1 2139 101 21 0 chrX 134229089 134229376 -28370554 + AluSx SINE Alu 1 293 -19 4274 225 62 18 chrX 134229376 134229424 -28370506 + L1ME1 LINE L1 2064 2108 -4107 2240 89 4 0 chrX 134229424 134229726 -28370204 + AluY SINE Alu 1 303 0 4274 225 62 18 chrX 134229726 134231085 -28368845 + L1ME1 LINE L1 2108 3473 -2742 1321 176 25 87 chrX 134231103 134231261 -28368669 + AluJo SINE Alu 1 131 -181 1884 75 3 88 chrX 134231261 134231607 -28368323 + AluY SINE Alu 1 320 0 1321 176 25 87 chrX 134231607 134231770 -28368160 + AluJo SINE Alu 131 303 -9 3742 209 42 20 chrX 134231803 134232889 -28367041 + L1ME1 LINE L1 4293 5401 -824 207 0 0 0 chrX 134232891 134232914 -28367016 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 711 169 0 24 chrX 134232914 134233038 -28366892 - FLAM_C SINE Alu -22 121 1 1323 141 161 20 chrX 134233055 134233348 -28366582 - AluSx SINE Alu 0 328 1 3276 231 15 9 chrX 134233352 134234145 -28365785 + L1ME1 LINE L1 5391 6188 -47 339 171 22 177 chrX 134234045 134234147 -28365783 + L1MA10 LINE L1 6244 6360 -43 * 1651 55 46 0 chrX 134234147 134234364 -28365566 - L1PA11 LINE L1 -6 6168 5942 339 171 22 177 chrX 134234364 134234376 -28365554 + L1MA10 LINE L1 6360 6372 -31 3826 121 14 6 chrX 134234376 134234997 -28364933 - L1MA8 LINE L1 -4 6287 5662 339 171 22 177 chrX 134234997 134235062 -28364868 + L1MA10 LINE L1 6372 6396 -7 2133 102 16 16 chrX 134235075 134235379 -28364551 + AluSx SINE Alu 1 304 -8 1902 116 24 14 chrX 134235544 134235940 -28363990 - AluSg SINE Alu 0 399 1 280 256 129 8 chrX 134236293 134236426 -28363504 - L1MC/D LINE L1 -312 5809 5696 7347 41 3 0 chrX 134236426 134237492 -28362438 - L1PA6 LINE L1 -3 6151 5087 247 240 71 71 chrX 134238166 134238320 -28361610 + L2 LINE L2 2338 2491 -823 356 273 84 52 chrX 134239579 134239828 -28360102 - L1MC4a LINE L1 -1849 5959 5703 1076 240 131 22 chrX 134239892 134240434 -28359496 - L1MC5 LINE L1 -111 7850 7250 512 255 85 55 chrX 134240440 134240675 -28359255 - L1MC4a LINE L1 -2130 5678 5437 341 347 160 25 chrX 134240960 134241317 -28358613 - L2 LINE L2 0 3272 2868 1942 163 0 3 chrX 134241488 134241777 -28358153 + AluJb SINE Alu 1 288 -24 22 56 0 0 chrX 134241777 134241813 -28358117 + AT_rich Low_complexity Low_complexity 1 36 0 309 51 0 0 chrX 134242017 134242056 -28357874 + (TTA)n Simple_repeat Simple_repeat 1 39 0 920 197 21 5 chrX 134242271 134242459 -28357471 + MER3 DNA MER1_type 1 191 -18 23 78 0 0 chrX 134244216 134244267 -28355663 + AT_rich Low_complexity Low_complexity 1 51 0 1239 85 0 18 chrX 134245110 134245274 -28354656 + AluSg/x SINE Alu 131 291 -19 330 217 302 16 chrX 134245302 134245431 -28354499 + MIR3 SINE MIR 40 205 -3 189 74 0 0 chrX 134245465 134245492 -28354438 + (TG)n Simple_repeat Simple_repeat 2 28 0 557 233 76 29 chrX 134245746 134245918 -28354012 + MIR SINE MIR 51 230 -32 1406 181 22 6 chrX 134246103 134246417 -28353513 + MER33 DNA MER1_type 1 319 -5 2351 82 3 0 chrX 134246449 134246740 -28353190 + AluSq SINE Alu 1 292 -21 382 243 4 164 chrX 134247023 134247230 -28352700 + MIR SINE MIR 40 278 16 1011 161 0 0 chrX 134247230 134247410 -28352520 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chrX 134247409 134247432 -28352498 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 382 243 4 164 chrX 134247410 134247487 -28352443 + MIR SINE MIR 277 260 -2 268 343 7 29 chrX 134247823 134247963 -28351967 + MIR SINE MIR 87 223 -39 1707 155 0 4 chrX 134247967 134248225 -28351705 + AluJo SINE Alu 19 275 -37 308 307 31 63 chrX 134249045 134249172 -28350758 - MIR SINE MIR -68 140 18 206 229 21 125 chrX 134250613 134250709 -28349221 - MIR SINE MIR -10 252 167 406 314 57 0 chrX 134250788 134250912 -28349018 + MIR3 SINE MIR 60 190 -18 21 36 0 0 chrX 134252675 134252703 -28347227 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 134259115 134259135 -28340795 + (TTA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chrX 134261561 134261585 -28338345 + AT_rich Low_complexity Low_complexity 1 24 0 504 200 45 84 chrX 134262110 134262190 -28337740 - MER5A DNA MER1_type -40 149 76 2123 95 3 3 chrX 134262190 134262473 -28337457 - AluSp SINE Alu -9 304 22 504 200 45 84 chrX 134262473 134262547 -28337383 - MER5A DNA MER1_type -113 76 1 223 247 155 31 chrX 134262921 134263018 -28336912 + MIR SINE MIR 86 194 -68 292 278 78 9 chrX 134263463 134263578 -28336352 + MIR3 SINE MIR 81 203 -5 324 245 53 43 chrX 134264436 134264530 -28335400 - MIR3 SINE MIR -25 183 89 260 320 221 0 chrX 134264813 134265035 -28334895 - L2 LINE L2 -481 2833 2563 652 175 50 8 chrX 134265239 134265359 -28334571 + FLAM_C SINE Alu 1 125 -18 670 251 45 25 chrX 134265993 134266047 -28333883 - L2 LINE L2 0 3313 3262 2038 125 24 7 chrX 134266047 134266344 -28333586 - AluSx SINE Alu -10 302 1 670 251 45 25 chrX 134266344 134266488 -28333442 - L2 LINE L2 -51 3262 3111 1345 222 70 7 chrX 134266491 134266904 -28333026 - MLT1C LTR MaLR 0 467 19 206 354 0 0 chrX 134266968 134267050 -28332880 - L2 LINE L2 -254 3059 2978 656 260 37 70 chrX 134267089 134267331 -28332599 - MIR SINE MIR 0 262 29 1721 154 0 18 chrX 134267478 134267750 -28332180 + AluJo SINE Alu 16 282 -30 252 0 0 0 chrX 134269367 134269395 -28330535 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 261 0 0 0 chrX 134269394 134269423 -28330507 + (TG)n Simple_repeat Simple_repeat 2 30 0 192 152 0 0 chrX 134269606 134269639 -28330291 + (TG)n Simple_repeat Simple_repeat 2 34 0 267 294 77 56 chrX 134269717 134269870 -28330060 + MIR3 SINE MIR 10 168 -61 200 296 161 0 chrX 134270303 134270384 -28329546 - MIR SINE MIR -11 251 158 727 280 83 26 chrX 134270481 134270745 -28329185 + L2 LINE L2 3019 3297 -16 1971 154 0 0 chrX 134270755 134271040 -28328890 - AluSx SINE Alu -19 293 9 225 0 0 0 chrX 134271065 134271090 -28328840 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 639 168 0 2 chrX 134271104 134271355 -28328575 + AluJ SINE Alu 1 299 -13 241 259 0 17 chrX 134271402 134271460 -28328470 - MIR SINE MIR -61 147 91 189 268 179 0 chrX 134271838 134271894 -28328036 - MIR SINE MIR -105 103 38 692 206 6 71 chrX 134272082 134272162 -28327768 + MIR SINE MIR 82 147 -115 1929 156 0 0 chrX 134272162 134272444 -28327486 + AluJb SINE Alu 1 282 -30 692 206 6 71 chrX 134272444 134272533 -28327397 + MIR SINE MIR 147 240 -22 201 202 60 0 chrX 134273045 134273129 -28326801 + (TA)n Simple_repeat Simple_repeat 1 89 0 605 94 54 9 chrX 134273132 134273358 -28326572 + (TATAA)n Simple_repeat Simple_repeat 1 236 0 56 39 0 0 chrX 134273358 134273435 -28326495 + AT_rich Low_complexity Low_complexity 1 77 0 312 129 61 12 chrX 134273435 134273598 -28326332 + (TA)n Simple_repeat Simple_repeat 2 172 0 22 35 0 0 chrX 134273606 134273635 -28326295 + AT_rich Low_complexity Low_complexity 1 29 0 232 224 118 24 chrX 134273718 134273803 -28326127 - L2 LINE L2 -926 2388 2296 326 365 8 0 chrX 134273807 134273933 -28325997 - L2 LINE L2 -1173 2141 2015 203 333 0 25 chrX 134274045 134274126 -28325804 + L2 LINE L2 1137 1215 -2099 838 213 17 0 chrX 134274420 134274594 -28325336 + MER69A DNA AcHobo 1 177 0 283 157 48 12 chrX 134274898 134274981 -28324949 + (TA)n Simple_repeat Simple_repeat 2 87 0 330 163 54 7 chrX 134274993 134275140 -28324790 + (TA)n Simple_repeat Simple_repeat 1 154 0 49 32 0 0 chrX 134275140 134275203 -28324727 + AT_rich Low_complexity Low_complexity 1 63 0 661 241 31 42 chrX 134275203 134275464 -28324466 - L1MC4a LINE L1 -1834 5974 5717 300 242 158 0 chrX 134275616 134275711 -28324219 + MIR SINE MIR 152 261 -1 195 348 18 18 chrX 134275731 134275843 -28324087 + L2 LINE L2 1511 1622 -1692 1036 111 0 0 chrX 134275868 134276030 -28323900 - L1MA4 LINE L1 -5 6295 6134 721 255 29 14 chrX 134276097 134276305 -28323625 - MLT1J LTR MaLR -8 503 293 284 220 114 76 chrX 134276376 134276508 -28323422 - MLT1J LTR MaLR -369 142 6 1775 171 3 20 chrX 134276526 134276831 -28323099 - AluJo SINE Alu -12 300 1 291 284 118 12 chrX 134276831 134276989 -28322941 + L2 LINE L2 1721 1899 -1415 397 398 36 20 chrX 134277017 134277213 -28322717 - L2 LINE L2 -6 3266 3068 2299 106 3 0 chrX 134277272 134277583 -28322347 + AluSx SINE Alu 1 312 0 512 114 13 0 chrX 134277717 134277796 -28322134 + MADE1 DNA Mariner 1 80 0 1725 305 102 39 chrX 134277826 134278761 -28321169 - L2 LINE L2 -434 2880 2006 180 0 0 0 chrX 134278761 134278781 -28321149 + (TA)n Simple_repeat Simple_repeat 2 21 0 2181 127 0 0 chrX 134278781 134279080 -28320850 - AluSq SINE Alu -14 299 1 1725 305 102 39 chrX 134279080 134279227 -28320703 - L2 LINE L2 -1307 2007 1728 2064 176 33 33 chrX 134279236 134279691 -28320239 + MSTB2 LTR MaLR 3 457 0 938 197 21 16 chrX 134279788 134279976 -28319954 + MER5A DNA MER1_type 1 189 0 207 100 0 0 chrX 134280065 134280095 -28319835 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 391 198 207 26 chrX 134280095 134280211 -28319719 - L2 LINE L2 -10 3303 3167 257 232 0 18 chrX 134280222 134280278 -28319652 - L2 LINE L2 -521 2793 2739 * 490 181 0 12 chrX 134280268 134280351 -28319579 + L2 LINE L2 3188 3269 -44 1583 189 34 65 chrX 134280396 134280762 -28319168 - L2 LINE L2 -595 2719 2366 513 265 66 0 chrX 134280762 134280928 -28319002 + MER69A DNA AcHobo 1 177 0 1583 189 34 65 chrX 134280928 134280978 -28318952 - L2 LINE L2 -948 2366 2316 1117 196 34 68 chrX 134280979 134281132 -28318798 + MLT1A2 LTR MaLR 1 158 -216 2141 93 7 4 chrX 134281132 134281410 -28318520 - AluSx SINE Alu -33 279 1 1117 196 34 68 chrX 134281410 134281608 -28318322 + MLT1A2 LTR MaLR 158 340 -34 1661 189 28 31 chrX 134281616 134281820 -28318110 - L2 LINE L2 -1015 2299 2095 2409 156 44 33 chrX 134281820 134282301 -28317629 - MER66B LTR ERV1 0 486 1 1661 189 28 31 chrX 134282301 134282488 -28317442 - L2 LINE L2 -1219 2095 1909 451 270 5 88 chrX 134282505 134282709 -28317221 - L2 LINE L2 -1890 1424 1238 414 0 0 0 chrX 134282771 134282817 -28317113 + (TG)n Simple_repeat Simple_repeat 2 47 0 545 253 208 0 chrX 134283212 134283390 -28316540 - MIR SINE MIR -10 252 38 620 230 146 0 chrX 134283425 134283590 -28316340 - MIR SINE MIR -30 232 44 970 269 184 33 chrX 134283751 134284564 -28315366 - L2 LINE L2 -1052 2262 1327 344 228 96 44 chrX 134284580 134284716 -28315214 - MIR SINE MIR -12 250 108 957 158 0 42 chrX 134284997 134285148 -28314782 + AluJb SINE Alu 142 287 -25 1201 79 0 28 chrX 134285148 134285326 -28314604 + L1PA10 LINE L1 5992 6164 -4 957 158 0 42 chrX 134285326 134285339 -28314591 + AluJb SINE Alu 287 299 -13 236 355 113 8 chrX 134285423 134285679 -28314251 - L2 LINE L2 -2365 949 667 899 149 39 6 chrX 134286530 134286711 -28313219 - MER53 DNA DNA 0 189 3 2257 100 0 13 chrX 134286811 134287111 -28312819 + AluSx SINE Alu 1 296 -16 357 320 135 42 chrX 134287232 134287491 -28312439 + L2 LINE L2 2973 3255 -17 381 225 17 58 chrX 134287524 134287644 -28312286 + MIR3 SINE MIR 88 202 -6 520 128 0 12 chrX 134287723 134287809 -28312121 + MLT1A1 LTR MaLR 1 85 -280 836 275 42 17 chrX 134287936 134288172 -28311758 + MIR SINE MIR 20 261 -1 716 94 0 0 chrX 134288365 134288471 -28311459 + HY1 scRNA scRNA 2 107 -5 353 343 64 12 chrX 134288509 134288549 -28311381 + L2 LINE L2 2172 2208 -1106 1788 175 0 7 chrX 134288549 134288846 -28311084 - AluJb SINE Alu -17 295 1 353 343 64 12 chrX 134288846 134288977 -28310953 + L2 LINE L2 2208 2352 -962 1151 239 59 55 chrX 134288982 134289509 -28310421 - MER39 LTR ERV1 0 707 1 206 238 86 29 chrX 134289513 134289618 -28310312 + L2 LINE L2 2342 2452 -862 1050 220 74 10 chrX 134290189 134290498 -28309432 + L1ME3A LINE L1 5623 5951 -219 193 356 81 0 chrX 134290824 134290911 -28309019 + L2 LINE L2 2977 3070 -202 434 257 20 20 chrX 134290933 134291085 -28308845 - L1MC5 LINE L1 -60 7901 7750 1449 289 89 0 chrX 134293111 134293641 -28306289 + MLT1L LTR MaLR 39 615 0 491 333 81 4 chrX 134293910 134294144 -28305786 + L3 LINE CR1 674 925 -652 420 261 174 36 chrX 134294270 134294420 -28305510 + MIR SINE MIR 15 199 -63 2427 77 149 11 chrX 134294420 134294796 -28305134 - MSTA LTR MaLR 0 428 1 420 261 174 36 chrX 134294796 134294840 -28305090 + MIR SINE MIR 199 236 -26 704 328 149 12 chrX 134294856 134295265 -28304665 + L3 LINE CR1 1006 1470 -107 2214 84 4 0 chrX 134295527 134295800 -28304130 + AluSp SINE Alu 1 274 -39 23 78 0 0 chrX 134295865 134295916 -28304014 + AT_rich Low_complexity Low_complexity 1 51 0 2887 143 8 13 chrX 134296042 134296510 -28303420 - MLT1C LTR MaLR -1 466 1 421 304 38 25 chrX 134296518 134296755 -28303175 - L1ME LINE L1 -566 5555 5316 1880 164 6 13 chrX 134297385 134297696 -28302234 + AluJo SINE Alu 1 309 -3 21 36 0 0 chrX 134297963 134297991 -28301939 + AT_rich Low_complexity Low_complexity 1 28 0 502 203 229 55 chrX 134298134 134298405 -28301525 - MER5C DNA MER1_type -6 318 1 2279 70 3 0 chrX 134298697 134299010 -28300920 + AluSp SINE Alu 1 314 0 576 307 69 11 chrX 134299373 134299483 -28300447 - ERVL LTR ERVL -903 4861 4759 252 0 0 0 chrX 134299483 134299511 -28300419 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 306 0 0 0 chrX 134299510 134299544 -28300386 + (GA)n Simple_repeat Simple_repeat 2 35 0 576 307 69 11 chrX 134299511 134299707 -28300223 - ERVL LTR ERVL -1005 4759 4572 556 267 47 6 chrX 134299715 134299887 -28300043 + HERVL LTR ERVL 4217 4395 -1259 401 190 30 40 chrX 134300007 134300107 -28299823 - Charlie4 DNA MER1_type -33 1928 1830 286 262 12 0 chrX 134300170 134300254 -28299676 - ERVL LTR ERVL -1809 3955 3871 911 240 0 10 chrX 134300265 134300465 -28299465 + MER58A DNA MER1_type 27 224 0 1419 316 112 28 chrX 134300491 134301594 -28298336 - ERVL LTR ERVL -1922 3842 2647 852 144 17 17 chrX 134301620 134301794 -28298136 - MER96B DNA MER1_type? -236 181 8 932 322 101 42 chrX 134301964 134302805 -28297125 - ERVL LTR ERVL -3382 2382 1492 1954 246 26 85 chrX 134302904 134303311 -28296619 + L1MC4 LINE L1 7165 7594 -448 1773 51 0 17 chrX 134303311 134303546 -28296384 + L1PA8 LINE L1 5941 6171 -1 1954 246 26 85 chrX 134303546 134303839 -28296091 + L1MC4 LINE L1 7594 7799 -243 2270 104 0 22 chrX 134303839 134304157 -28295773 + AluY SINE Alu 1 311 0 1954 246 26 85 chrX 134304157 134304388 -28295542 + L1MC4 LINE L1 7799 8042 0 1965 138 33 16 chrX 134304618 134304976 -28294954 + AluJo SINE Alu 1 363 0 286 247 25 95 chrX 134305744 134305902 -28294028 - MIR SINE MIR -39 223 77 469 188 8 17 chrX 134307042 134307159 -28292771 + L1M4 LINE L1 12 127 -6415 * 827 146 2 1 chrX 134307150 134307323 -28292607 + L1P5 LINE L1 5327 5499 -652 41610 46 1 1 chrX 134307373 134313519 -28286411 - L1PA4 LINE L1 -4 6151 1 489 241 9 0 chrX 134313529 134313641 -28286289 + L1MB7 LINE L1 5525 5637 -541 216 0 0 0 chrX 134313641 134313665 -28286265 + (TA)n Simple_repeat Simple_repeat 2 25 0 2551 172 12 4 chrX 134313665 134314160 -28285770 + L1MB7 LINE L1 5673 6171 -13 2271 113 0 7 chrX 134314485 134314787 -28285143 - AluSq SINE Alu -13 300 1 2409 88 7 0 chrX 134315556 134315862 -28284068 + AluSc SINE Alu 1 308 -1 520 184 0 1 chrX 134316812 134316919 -28283011 + L1MD1 LINE L1 5713 5804 -374 1653 157 56 0 chrX 134316919 134317229 -28282701 + L1MA4 LINE L1 5949 6290 -10 520 184 0 1 chrX 134317229 134317245 -28282685 + L1MD1 LINE L1 5804 5819 -359 1451 203 16 22 chrX 134317247 134317616 -28282314 + L1MB8 LINE L1 5808 6174 -4 449 91 39 0 chrX 134317628 134317705 -28282225 + L1MB7 LINE L1 6105 6184 0 3867 195 6 13 chrX 134317707 134318850 -28281080 + L1MB2 LINE L1 4488 5620 -560 * 6296 117 42 9 chrX 134318836 134320167 -28279763 + L1MA4 LINE L1 4927 6294 -6 2713 174 34 9 chrX 134320167 134320724 -28279206 + L1MB2 LINE L1 5594 6169 -2 2563 202 24 4 chrX 134322604 134323138 -28276792 + Cheshire DNA MER1_type 1 545 -1875 1351 86 0 0 chrX 134323148 134323311 -28276619 + AluSc SINE Alu 61 223 -86 1947 155 52 6 chrX 134323415 134323777 -28276153 + Cheshire DNA MER1_type 313 691 -1729 2525 176 14 14 chrX 134324508 134324558 -28275372 + MSTB1 LTR MaLR 1 50 -382 2649 141 41 0 chrX 134324558 134324969 -28274961 - MSTA LTR MaLR 0 428 1 2525 176 14 14 chrX 134324969 134325350 -28274580 + MSTB1 LTR MaLR 49 432 0 2166 123 0 7 chrX 134325834 134326134 -28273796 - AluSx SINE Alu -14 298 1 400 193 0 28 chrX 134326134 134326264 -28273666 - L1MC3 LINE L1 -25 7760 7530 1460 189 40 85 chrX 134326277 134326402 -28273528 - MLT1B LTR MaLR -6 384 255 3662 62 4 21 chrX 134326402 134326867 -28273063 - L1PA8 LINE L1 0 6172 5716 1460 189 40 85 chrX 134326867 134327041 -28272889 - MLT1B LTR MaLR -135 255 103 2217 122 3 0 chrX 134327041 134327337 -28272593 - AluSx SINE Alu -15 297 1 1460 189 40 85 chrX 134327337 134327411 -28272519 - MLT1B LTR MaLR -287 103 27 2150 121 0 0 chrX 134327422 134327711 -28272219 - L1PA13 LINE L1 -19 6144 5856 1610 173 90 42 chrX 134327711 134327973 -28271957 - MLT1A1-int LTR MaLR -715 656 408 1689 177 3 7 chrX 134327973 134328267 -28271663 - AluJb SINE Alu -19 293 1 1610 173 90 42 chrX 134328267 134328399 -28271531 - MLT1A1-int LTR MaLR -963 408 122 2294 95 33 7 chrX 134328438 134328743 -28271187 + AluSp SINE Alu 1 313 0 1880 175 20 11 chrX 134328756 134329091 -28270839 - MLT1A1 LTR MaLR -26 406 1 811 105 32 0 chrX 134329091 134329215 -28270715 - MLT1B-int LTR MaLR -1243 128 1 2084 165 42 21 chrX 134329215 134329597 -28270333 - MLT1B LTR MaLR 0 390 1 3758 255 23 20 chrX 134330118 134331060 -28268870 + L1M4 LINE L1 3 947 -5595 3309 152 0 38 chrX 134331066 134331600 -28268330 - MLT2B1 LTR ERVL -6 514 1 34905 131 38 32 chrX 134331600 134332360 -28267570 - ERVL-B1 LTR ERVL -7 5757 5003 3576 76 2 5 chrX 134332360 134332808 -28267122 - L1PA7 LINE L1 -1 6153 5707 34905 131 38 32 chrX 134332808 134336807 -28263123 - ERVL-B1 LTR ERVL -761 5003 1030 230 176 0 88 chrX 134336807 134336875 -28263055 + Charlie1 DNA MER1_type 2245 2306 -455 34905 131 38 32 chrX 134336875 134337618 -28262312 - ERVL-B1 LTR ERVL -4734 1030 149 186 103 0 0 chrX 134337618 134337647 -28262283 + (CTATG)n Simple_repeat Simple_repeat 5 33 0 34905 131 38 32 chrX 134337647 134337708 -28262222 - ERVL-B1 LTR ERVL -5615 149 90 1371 150 34 8 chrX 134337708 134337942 -28261988 - LTR47B LTR ERVL 0 443 204 947 231 240 50 chrX 134337974 134338014 -28261916 + L1M4 LINE L1 1894 1925 -4721 2361 92 3 3 chrX 134338014 134338319 -28261611 + AluSp SINE Alu 1 305 -8 947 231 240 50 chrX 134338319 134338762 -28261168 + L1M4 LINE L1 1925 2469 -4177 1857 157 10 0 chrX 134339447 134339740 -28260190 + AluJb SINE Alu 1 296 -16 225 0 0 0 chrX 134339748 134339773 -28260157 + (CA)n Simple_repeat Simple_repeat 2 26 0 236 239 75 30 chrX 134340464 134340531 -28259399 - L2 LINE L2 -5 3267 3198 2689 183 14 0 chrX 134340531 134340951 -28258979 + MSTB LTR MaLR 1 426 0 397 149 0 0 chrX 134341019 134341086 -28258844 + MIR SINE MIR 74 140 -122 14077 180 15 24 chrX 134341086 134345091 -28254839 - L1PA16 LINE L1 0 6869 2907 41242 69 8 2 chrX 134345097 134351210 -28248720 - L1PA5 LINE L1 -1 6153 5 6020 207 16 15 chrX 134351211 134352665 -28247265 - L1PA16 LINE L1 -3931 2918 1452 1409 214 0 43 chrX 134353088 134353391 -28246539 - L1PA16 LINE L1 -6116 733 444 1005 128 0 0 chrX 134353837 134353978 -28245952 + AluSc SINE Alu 1 141 -168 1504 178 14 24 chrX 134354943 134355235 -28244695 - AluJo SINE Alu -23 289 1 292 286 134 9 chrX 134355449 134355561 -28244369 + L3 LINE CR1 1445 1570 -7 2764 194 45 25 chrX 134355936 134356486 -28243444 - MER68 LTR ERV1 0 562 2 267 216 136 8 chrX 134357635 134357760 -28242170 - MER113 DNA MER1_type? -358 163 23 444 307 54 24 chrX 134357777 134357887 -28242043 + MIR SINE MIR 77 195 -67 4626 111 33 73 chrX 134357887 134358705 -28241225 + LTR1 LTR ERV1 1 785 0 444 307 54 24 chrX 134358705 134358760 -28241170 + MIR SINE MIR 195 247 -15 * 754 251 48 31 chrX 134358755 134358982 -28240948 - MIR SINE MIR 0 262 32 302 345 78 26 chrX 134360268 134360384 -28239546 - L1M2 LINE L1 -6072 777 656 411 268 101 25 chrX 134360801 134360999 -28238931 - L1MC4 LINE L1 -1 8041 7829 326 247 31 0 chrX 134361043 134361140 -28238790 - L1ME2 LINE L1 -10 6154 6055 227 162 0 0 chrX 134361140 134361177 -28238753 - MER3 DNA MER1_type -160 49 13 1974 176 70 44 chrX 134361213 134361502 -28238428 - MLT1C LTR MaLR 0 467 187 198 0 0 0 chrX 134361502 134361524 -28238406 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1710 46 0 0 chrX 134361524 134361718 -28238212 - L1PA3 LINE L1 -18 6137 5944 1974 176 70 44 chrX 134361718 134361882 -28238048 - MLT1C LTR MaLR -279 188 1 655 183 43 86 chrX 134361885 134361971 -28237959 - L1ME2 LINE L1 -173 5991 5903 1871 163 3 10 chrX 134361971 134362277 -28237653 - AluJo SINE Alu -8 304 1 655 183 43 86 chrX 134362277 134362376 -28237554 - L1ME2 LINE L1 -261 5903 5814 474 73 15 0 chrX 134362386 134362454 -28237476 - HY3 scRNA scRNA -1 100 32 1150 147 45 0 chrX 134362454 134362652 -28237278 - L1ME2 LINE L1 -344 5820 5614 5648 35 0 0 chrX 134363055 134363682 -28236248 - L1PA4 LINE L1 -5 6150 5524 242 333 132 56 chrX 134363964 134364267 -28235663 - L3b LINE CR1 -42 1541 1216 426 317 18 42 chrX 134364797 134364964 -28234966 + MIR SINE MIR 1 163 -99 612 218 87 63 chrX 134364964 134365077 -28234853 + L1MA10 LINE L1 5757 5866 -468 482 138 0 23 chrX 134365077 134365164 -28234766 + L1MB8 LINE L1 6093 6177 -1 612 218 87 63 chrX 134365164 134365464 -28234466 + L1MA10 LINE L1 5866 6332 -2 1260 199 19 133 chrX 134365916 134366023 -28233907 - MLT1A1 LTR MaLR 0 365 247 2180 78 14 7 chrX 134366023 134366339 -28233591 + AluY SINE Alu 1 318 0 1260 199 19 133 chrX 134366339 134366642 -28233288 - MLT1A1 LTR MaLR -118 247 1 862 244 41 41 chrX 134366703 134366945 -28232985 - MLT1E1 LTR MaLR 0 654 413 837 165 8 0 chrX 134367046 134367179 -28232751 - AluJo SINE Alu -178 134 1 843 231 79 9 chrX 134367213 134367429 -28232501 - MLT1E1 LTR MaLR -409 245 15 815 116 22 14 chrX 134367793 134367931 -28231999 + L1MB7 LINE L1 5358 5496 -688 * 41326 66 6 6 chrX 134367926 134374067 -28225863 + L1PA5 LINE L1 11 6153 -1 3383 167 57 6 chrX 134374073 134374745 -28225185 + L1MB7 LINE L1 5476 6181 -3 471 242 208 0 chrX 134374977 134375126 -28224804 + MER5A DNA MER1_type 9 188 -1 21 0 0 0 chrX 134376206 134376227 -28223703 + AT_rich Low_complexity Low_complexity 1 21 0 3242 164 11 6 chrX 134376236 134376864 -28223066 + L1M2 LINE L1 4362 4992 -1154 8131 91 13 2 chrX 134376864 134378826 -28221104 + L1PA8 LINE L1 4209 6180 0 2271 99 3 0 chrX 134379178 134379470 -28220460 - AluSg SINE Alu -17 293 1 21 0 0 0 chrX 134379952 134379973 -28219957 + AT_rich Low_complexity Low_complexity 1 21 0 41618 44 2 1 chrX 134380394 134386541 -28213389 + L1PA4 LINE L1 1 6153 -2 2503 134 15 45 chrX 134386701 134387441 -28212489 + L1M2 LINE L1 4983 5693 -607 301 360 140 28 chrX 134387441 134387947 -28211983 + L2 LINE L2 273 860 -2454 1857 156 0 14 chrX 134387947 134388242 -28211688 + AluJb SINE Alu 1 291 -21 301 360 140 28 chrX 134388242 134388344 -28211586 + L2 LINE L2 860 949 -2365 358 278 16 32 chrX 134388360 134388486 -28211444 + MER94 DNA DNA 11 134 0 1825 149 7 14 chrX 134388818 134389106 -28210824 - AluJb SINE Alu -26 286 1 462 239 115 31 chrX 134389109 134389335 -28210595 - L1MDa LINE L1 -1922 4618 4374 418 230 32 8 chrX 134389337 134389463 -28210467 - L1MDa LINE L1 -2240 4300 4172 852 207 94 113 chrX 134389467 134389848 -28210082 - MLT1A1 LTR MaLR 0 365 23 247 301 16 8 chrX 134389983 134390106 -28209824 - L1MDa LINE L1 -3632 2908 2785 308 211 206 0 chrX 134390161 134390335 -28209595 - L1MDa LINE L1 -3846 2694 2486 2447 82 3 0 chrX 134390345 134390651 -28209279 - AluY SINE Alu -4 307 1 400 105 0 0 chrX 134391074 134391131 -28208799 - FLAM SINE Alu -19 124 68 390 324 81 24 chrX 134391237 134391484 -28208446 - L1MDa LINE L1 -5295 1235 975 21 0 0 0 chrX 134391768 134391789 -28208141 + AT_rich Low_complexity Low_complexity 1 21 0 325 323 85 45 chrX 134391879 134392080 -28207850 - L2 LINE L2 -453 2861 2653 442 180 211 8 chrX 134392130 134392258 -28207672 + HsTC2 DNA Tc2 1 154 -1744 1013 205 43 15 chrX 134392269 134392685 -28207245 + HsTC2 DNA Tc2 1250 1894 -4 238 356 27 14 chrX 134392708 134392854 -28207076 + L2 LINE L2 2923 3070 -202 885 134 22 0 chrX 134393396 134393530 -28206400 - AluSq/x SINE Alu -175 137 1 476 240 90 96 chrX 134393725 134394058 -28205872 - L1ME4a LINE L1 -219 5902 5572 2472 104 8 37 chrX 134394085 134394460 -28205470 - THE1B LTR MaLR 0 364 1 231 273 0 15 chrX 134394574 134394640 -28205290 + MLT1K LTR MaLR 154 218 -370 322 289 116 26 chrX 134394730 134394962 -28204968 + MLT1L LTR MaLR 363 615 0 229 182 0 0 chrX 134395177 134395221 -28204709 - L2 LINE L2 0 3313 3270 1153 238 184 38 chrX 134395354 134395833 -28204097 - L2 LINE L2 0 3313 2768 693 164 0 9 chrX 134395882 134395998 -28203932 + FLAM_C SINE Alu 3 117 -26 195 42 0 0 chrX 134396001 134396025 -28203905 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1747 168 0 34 chrX 134396065 134396385 -28203545 + AluJo SINE Alu 1 310 0 2093 141 0 0 chrX 134396459 134396750 -28203180 - AluSq SINE Alu -20 293 3 2339 109 0 6 chrX 134396762 134397074 -28202856 - AluSq SINE Alu -3 310 1 516 217 87 9 chrX 134397160 134397275 -28202655 - L2 LINE L2 0 3313 3190 718 210 171 6 chrX 134398403 134398579 -28201351 - MIR SINE MIR -57 205 1 3068 74 0 0 chrX 134399334 134399727 -28200203 + L1PA7 LINE L1 5754 6146 -8 693 281 47 25 chrX 134400011 134400246 -28199684 + MIR SINE MIR 6 245 -17 2274 97 40 0 chrX 134401075 134401373 -28198557 - AluSg SINE Alu 0 310 1 1733 166 51 0 chrX 134401401 134401697 -28198233 - AluJb SINE Alu -1 311 1 249 341 0 12 chrX 134401876 134401958 -28197972 - L2 LINE L2 -1 3271 3191 1759 181 0 6 chrX 134402509 134402823 -28197107 - AluJb SINE Alu 0 312 1 372 353 39 35 chrX 134402871 134403157 -28196773 - L1M4 LINE L1 -2281 3865 3579 369 282 69 25 chrX 134403197 134403559 -28196371 - L1M4 LINE L1 -2658 3488 3111 237 196 0 0 chrX 134404279 134404330 -28195600 + GA-rich Low_complexity Low_complexity 1 51 0 1004 265 123 38 chrX 134404550 134404876 -28195054 + L2 LINE L2 2791 3185 -128 1791 198 0 0 chrX 134404876 134405184 -28194746 - AluJb SINE Alu -4 308 1 1004 265 123 38 chrX 134405184 134405325 -28194605 + L2 LINE L2 3185 3313 0 211 200 0 0 chrX 134405331 134405366 -28194564 - L2 LINE L2 -37 3235 3201 692 273 52 5 chrX 134405466 134405660 -28194270 + MIR SINE MIR 31 233 -29 197 280 53 13 chrX 134406253 134406328 -28193602 - MIR3 SINE MIR -17 191 114 267 307 86 21 chrX 134406466 134406606 -28193324 - L2 LINE L2 -1 3312 3164 1647 133 110 3 chrX 134406840 134407157 -28192773 + L1MB8 LINE L1 5797 6147 -31 2069 125 13 0 chrX 134407262 134407566 -28192364 + AluSx SINE Alu 1 308 -4 703 226 92 12 chrX 134407566 134407730 -28192200 - MIR SINE MIR -85 177 1 1584 290 113 33 chrX 134407738 134408512 -28191418 - L2 LINE L2 -495 2819 1961 2309 87 10 0 chrX 134408512 134408810 -28191120 + AluSq SINE Alu 1 301 -12 1584 290 113 33 chrX 134408810 134408942 -28190988 - L2 LINE L2 -1353 1961 1841 424 226 8 68 chrX 134409305 134409438 -28190492 + MER103 DNA DNA 41 165 -1 189 107 0 0 chrX 134409735 134409763 -28190167 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 384 203 0 190 chrX 134409768 134409931 -28189999 - L2 LINE L2 -19 3294 3163 2218 115 23 0 chrX 134410104 134410408 -28189522 - AluSx SINE Alu -1 311 1 377 309 62 0 chrX 134410659 134410756 -28189174 - MIR SINE MIR -61 147 45 2086 96 3 31 chrX 134411233 134411525 -28188405 + AluSx SINE Alu 1 284 -28 801 306 30 8 chrX 134411733 134411968 -28187962 - MIR SINE MIR -2 260 21 871 285 93 18 chrX 134411970 134412356 -28187574 - LTR16B LTR ERVL -2 462 48 1192 133 18 53 chrX 134412368 134412594 -28187336 + MER20 DNA MER1_type 2 219 0 475 295 108 0 chrX 134412778 134412917 -28187013 + L2 LINE L2 3118 3271 -1 812 342 42 65 chrX 134413002 134413157 -28186773 + L2 LINE L2 2289 2446 -868 1827 184 3 13 chrX 134413157 134413472 -28186458 + AluJo SINE Alu 1 312 0 2382 93 0 37 chrX 134413475 134413798 -28186132 + AluSq SINE Alu 1 311 -2 812 342 42 65 chrX 134413798 134414241 -28185689 + L2 LINE L2 2448 2877 -437 1031 168 31 21 chrX 134414242 134414433 -28185497 + MER20 DNA MER1_type 7 199 -20 756 244 84 71 chrX 134414491 134414802 -28185128 + L2 LINE L2 2955 3269 -3 3656 30 2 0 chrX 134414899 134415332 -28184598 + L1PA6 LINE L1 5717 6150 -4 418 143 86 0 chrX 134415362 134415432 -28184498 + AluS SINE Alu 2 77 -235 2234 111 17 0 chrX 134415629 134415926 -28184004 - AluSq SINE Alu -11 302 1 2329 96 3 0 chrX 134416123 134416415 -28183515 + AluSx SINE Alu 1 293 -19 433 271 31 54 chrX 134416475 134416604 -28183326 - L2 LINE L2 0 3313 3188 238 333 0 0 chrX 134417233 134417308 -28182622 + MIR SINE MIR 187 261 -1 840 249 46 3 chrX 134417618 134418037 -28181893 + LTR33 LTR ERVL 48 519 -2 358 229 0 0 chrX 134418054 134418124 -28181806 + L2 LINE L2 3199 3268 -4 404 305 202 10 chrX 134418689 134418892 -28181038 + MIR SINE MIR 8 249 -13 1880 134 7 14 chrX 134418901 134419212 -28180718 - AluJb SINE Alu 0 309 1 240 337 51 31 chrX 134419437 134419535 -28180395 + L2 LINE L2 3078 3177 -95 22 0 0 0 chrX 134419568 134419590 -28180340 + AT_rich Low_complexity Low_complexity 1 22 0 499 241 55 128 chrX 134420302 134420576 -28179354 - L2 LINE L2 -2 3270 3017 183 42 0 0 chrX 134421219 134421243 -28178687 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 3226 145 40 14 chrX 134421599 134422094 -28177836 - L1MA9 LINE L1 -22 6290 5774 414 100 0 0 chrX 134422094 134422154 -28177776 + (TG)n Simple_repeat Simple_repeat 1 60 0 3226 145 40 14 chrX 134422154 134422277 -28177653 - L1MA9 LINE L1 -538 5774 5656 273 98 0 0 chrX 134422550 134422591 -28177339 + (GA)n Simple_repeat Simple_repeat 2 42 0 3641 126 12 0 chrX 134423861 134424433 -28175497 - L1MB2 LINE L1 -1 6170 5592 495 105 0 40 chrX 134424411 134424487 -28175443 - AluJo SINE Alu -174 138 66 396 234 0 65 chrX 134424654 134424761 -28175169 + L2 LINE L2 3174 3273 -40 253 220 0 0 chrX 134424768 134424818 -28175112 - L2 LINE L2 0 3313 3264 204 339 15 0 chrX 134426307 134426372 -28173558 + L2 LINE L2 3236 3301 -12 526 154 10 35 chrX 134426634 134426663 -28173267 + CT-rich Low_complexity Low_complexity 1 29 -329 1372 38 0 0 chrX 134426663 134426821 -28173109 - L1PA4 LINE L1 0 6155 5998 526 154 10 35 chrX 134426821 134427002 -28172928 + CT-rich Low_complexity Low_complexity 29 358 0 199 238 0 0 chrX 134427005 134427047 -28172883 + L3b LINE CR1 1389 1430 -153 267 79 0 0 chrX 134427177 134427215 -28172715 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 2197 112 0 3 chrX 134427800 134428096 -28171834 + AluSg SINE Alu 1 295 -15 2333 68 17 3 chrX 134428111 134428404 -28171526 - AluY SINE Alu -14 297 1 790 139 31 39 chrX 134428411 134428540 -28171390 - FLAM_C SINE Alu -14 129 2 2197 112 0 3 chrX 134428585 134428881 -28171049 - AluSg SINE Alu -15 295 1 312 77 0 0 chrX 134429007 134429046 -28170884 - AluSc SINE Alu -196 103 65 953 183 20 30 chrX 134429046 134429243 -28170687 - AluJo SINE Alu -113 199 5 185 303 0 15 chrX 134429245 134429311 -28170619 + MER5A DNA MER1_type 124 188 -1 571 231 231 14 chrX 134429506 134429714 -28170216 - MIR SINE MIR -2 260 8 222 319 28 0 chrX 134430226 134430298 -28169632 + L3b LINE CR1 1430 1503 -80 2205 125 0 0 chrX 134431197 134431509 -28168421 + AluSx SINE Alu 1 312 0 312 137 0 0 chrX 134432106 134432157 -28167773 + (CA)n Simple_repeat Simple_repeat 2 52 0 307 313 0 87 chrX 134433180 134433330 -28166600 + MIR SINE MIR 47 183 -79 1794 138 7 43 chrX 134433792 134434128 -28165802 + AluSq SINE Alu 1 313 0 223 284 104 30 chrX 134435185 134435252 -28164678 + L2 LINE L2 3199 3270 -43 199 238 0 0 chrX 134435229 134435271 -28164659 + MIR SINE MIR 217 258 -4 * 2307 157 45 0 chrX 134435563 134435939 -28163991 - L1MB1 LINE L1 -7 6161 5769 2158 75 0 11 chrX 134435939 134436215 -28163715 - L1PA12 LINE L1 -1 6167 5892 1893 131 34 3 chrX 134436215 134436513 -28163417 - L1MB1 LINE L1 -388 5780 5474 414 326 72 14 chrX 134436527 134436665 -28163265 - MIR SINE MIR -115 147 2 21 57 0 0 chrX 134437298 134437333 -28162597 + AT_rich Low_complexity Low_complexity 1 35 0 2082 114 14 0 chrX 134437446 134437750 -28162180 - AluSx SINE Alu 0 308 1 217 290 150 10 chrX 134437878 134437978 -28161952 - L2 LINE L2 -2 3311 3198 584 340 10 5 chrX 134437981 134438181 -28161749 - MIR3 SINE MIR -4 204 4 742 183 83 124 chrX 134438900 134439136 -28160794 - MER5C DNA MER1_type 0 324 105 1446 185 27 34 chrX 134439136 134439433 -28160497 + AluJb SINE Alu 1 295 -17 742 183 83 124 chrX 134439433 134439534 -28160396 - MER5C DNA MER1_type -219 105 1 2208 97 0 0 chrX 134439786 134440064 -28159866 + AluSg SINE Alu 2 279 -31 195 69 0 0 chrX 134440064 134440093 -28159837 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 320 252 78 9 chrX 134442585 134442700 -28157230 + MER113 DNA MER1_type? 9 131 -390 24 0 0 0 chrX 134442780 134442804 -28157126 + AT_rich Low_complexity Low_complexity 1 24 0 733 295 125 39 chrX 134443300 134444049 -28155881 + L2 LINE L2 2459 3272 0 2486 80 0 3 chrX 134444413 134444724 -28155206 - AluSg SINE Alu 0 310 1 24 96 0 0 chrX 134445603 134445676 -28154254 + GC_rich Low_complexity Low_complexity 1 73 0 342 159 0 0 chrX 134445717 134445786 -28154144 + (CCCCG)n Simple_repeat Simple_repeat 4 72 0 202 250 18 54 chrX 134448193 134448249 -28151681 - L2 LINE L2 -13 3259 3206 366 289 48 0 chrX 134450047 134450151 -28149779 - L2 LINE L2 -40 3232 3124 493 282 38 15 chrX 134452560 134452691 -28147239 + L2 LINE L2 3139 3272 0 2171 129 0 10 chrX 134453176 134453485 -28146445 + AluSx SINE Alu 1 306 -6 223 307 64 57 chrX 134454105 134454245 -28145685 + L2 LINE L2 3170 3310 -3 351 0 0 0 chrX 134454442 134454481 -28145449 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2050 120 0 0 chrX 134454485 134454761 -28145169 - AluSx SINE Alu -24 288 13 394 216 128 32 chrX 134455645 134455770 -28144160 - L2 LINE L2 0 3272 3136 617 121 0 0 chrX 134455889 134455972 -28143958 + FRAM SINE Alu 74 156 -20 278 176 0 20 chrX 134456379 134456430 -28143500 + L2 LINE L2 3264 3313 0 609 292 13 30 chrX 134456440 134456676 -28143254 - L2 LINE L2 -921 2393 2162 181 253 172 11 chrX 134456680 134456767 -28143163 - L2 LINE L2 -1037 2277 2177 1745 181 3 0 chrX 134457058 134457374 -28142556 + AluJb SINE Alu 1 317 0 720 225 136 24 chrX 134457958 134458171 -28141759 - MIR SINE MIR -6 256 20 503 319 132 32 chrX 134458253 134458717 -28141213 + L2 LINE L2 2018 2527 -787 956 230 111 0 chrX 134462776 134463002 -28136928 - MIR SINE MIR 0 262 12 1666 173 20 17 chrX 134463480 134463812 -28136118 + AluSq SINE Alu 1 313 0 208 283 88 53 chrX 134464886 134464999 -28134931 + L3b LINE CR1 1320 1436 -147 1132 173 88 147 chrX 134465710 134466254 -28133676 - MLT1C LTR MaLR 0 467 6 185 292 0 0 chrX 134466416 134466464 -28133466 - MIR SINE MIR -63 145 98 256 254 17 0 chrX 134466535 134466594 -28133336 - MIR SINE MIR -63 145 86 628 118 29 10 chrX 134466695 134466797 -28133133 + MLT1C LTR MaLR 364 467 0 375 300 39 31 chrX 134467389 134467519 -28132411 - L3 LINE CR1 -18 1559 1429 389 333 45 0 chrX 134467557 134467689 -28132241 - L2 LINE L2 -1 3312 3175 788 216 39 22 chrX 134467957 134468138 -28131792 - MIR SINE MIR -73 189 6 255 237 155 10 chrX 134468402 134468499 -28131431 - MIR3 SINE MIR -33 175 65 181 279 82 0 chrX 134469040 134469101 -28130829 - L2 LINE L2 -61 3252 3187 393 317 137 15 chrX 134469423 134469694 -28130236 - L2 LINE L2 -568 2746 2443 451 325 56 0 chrX 134469705 134469831 -28130099 + L2 LINE L2 3136 3268 -4 298 238 88 81 chrX 134470986 134471146 -28128784 - L3 LINE CR1 -5 1572 1412 181 312 111 51 chrX 134471084 134471318 -28128612 + L2 LINE L2 2716 2963 -351 * 714 216 1 3 chrX 134471415 134471565 -28128365 - L1ME2 LINE L1 -3 6331 6023 507 286 90 26 chrX 134471673 134471862 -28128068 - MIR SINE MIR -5 257 57 1449 92 0 65 chrX 134472503 134472732 -28127198 - AluSg/x SINE Alu -11 299 86 190 333 30 0 chrX 134472761 134472827 -28127103 - L3 LINE CR1 -1318 259 192 1941 134 19 32 chrX 134472833 134473147 -28126783 - AluJo SINE Alu 0 312 3 191 279 0 0 chrX 134473286 134473329 -28126601 - L2 LINE L2 -94 3219 3177 300 395 62 0 chrX 134473335 134473464 -28126466 - L3 LINE CR1 -1425 152 16 24 32 0 0 chrX 134473543 134473574 -28126356 + AT_rich Low_complexity Low_complexity 1 31 0 406 303 8 45 chrX 134475764 134475860 -28124070 + L2 LINE L2 3146 3237 -35 1725 220 38 49 chrX 134475860 134476329 -28123601 - LTR16B LTR ERVL 0 464 1 406 303 8 45 chrX 134476329 134476364 -28123566 + L2 LINE L2 3237 3272 0 2391 76 0 3 chrX 134476367 134476669 -28123261 + AluSq SINE Alu 9 309 -4 910 98 0 0 chrX 134476922 134477045 -28122885 + AluSp/q SINE Alu 190 312 -1 1326 228 19 41 chrX 134477061 134477474 -28122456 - L1ME1 LINE L1 -5 6161 5758 812 169 152 0 chrX 134477474 134477652 -28122278 + L2 LINE L2 3103 3307 -6 211 176 0 0 chrX 134478992 134479026 -28120904 + (TGG)n Simple_repeat Simple_repeat 2 35 0 992 247 37 21 chrX 134479026 134479269 -28120661 - MIR SINE MIR -1 261 15 192 125 0 0 chrX 134480277 134480309 -28119621 + (TC)n Simple_repeat Simple_repeat 1 32 0 423 0 0 0 chrX 134480313 134480360 -28119570 + (CA)n Simple_repeat Simple_repeat 1 47 0 578 194 93 0 chrX 134481367 134481496 -28118434 - MIR SINE MIR 0 262 122 479 254 28 28 chrX 134482232 134482374 -28117556 + MIR SINE MIR 23 164 -98 851 255 39 5 chrX 134484950 134485158 -28114772 - MIR SINE MIR -43 219 5 610 183 49 37 chrX 134485452 134485616 -28114314 - MER69A DNA AcHobo -1 176 11 1357 112 0 0 chrX 134485626 134485813 -28114117 - AluSg/x SINE Alu -2 308 122 1947 144 0 0 chrX 134486014 134486299 -28113631 - AluJb SINE Alu -27 285 1 250 276 40 14 chrX 134486418 134486526 -28113404 + MIR SINE MIR 9 120 -88 30 27 0 0 chrX 134486713 134486750 -28113180 + AT_rich Low_complexity Low_complexity 1 37 0 327 235 12 0 chrX 134486770 134486855 -28113075 - L1ME4a LINE L1 -87 6034 5949 254 328 168 15 chrX 134487166 134487297 -28112633 + L2 LINE L2 3117 3267 -5 318 302 62 31 chrX 134488152 134488281 -28111649 + MIR SINE MIR 127 259 -3 27 29 0 0 chrX 134488492 134488526 -28111404 + AT_rich Low_complexity Low_complexity 1 34 0 260 221 18 71 chrX 134488731 134488844 -28111086 - L1ME4a LINE L1 -48 6073 5967 563 270 62 22 chrX 134488983 134489209 -28110721 - L1ME4a LINE L1 -332 5789 5555 769 41 0 0 chrX 134489245 134489343 -28110587 - L1MA1 LINE L1 0 6302 6205 321 311 70 23 chrX 134489746 134489917 -28110013 + MIR SINE MIR 37 216 -46 481 264 67 41 chrX 134490865 134491046 -28108884 - MIR SINE MIR -61 201 9 783 244 129 22 chrX 134493034 134493259 -28106671 + MIR SINE MIR 8 256 -6 262 188 69 40 chrX 134493676 134493777 -28106153 - L1ME4a LINE L1 -18 6103 6000 630 304 12 6 chrX 134494185 134494346 -28105584 + MIR3 SINE MIR 23 184 -24 186 43 0 0 chrX 134494380 134494403 -28105527 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 479 229 57 57 chrX 134494931 134495106 -28104824 + MIR SINE MIR 7 181 -81 275 100 0 0 chrX 134495111 134495151 -28104779 + AluJb SINE Alu 1 40 -261 252 0 0 0 chrX 134495170 134495198 -28104732 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1473 175 52 0 chrX 134495208 134495305 -28104625 + AluJb SINE Alu 26 117 -195 213 39 0 0 chrX 134495305 134495331 -28104599 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1473 175 52 0 chrX 134495331 134495484 -28104446 + AluJb SINE Alu 117 289 -23 1832 143 58 134 chrX 134496523 134496587 -28103343 - MSTA LTR MaLR 0 428 361 1865 128 7 40 chrX 134496587 134496883 -28103047 + AluJb SINE Alu 3 288 -24 1832 143 58 134 chrX 134496883 134496913 -28103017 - MSTA LTR MaLR -67 361 330 2247 113 7 0 chrX 134496913 134497222 -28102708 + AluSq SINE Alu 1 311 -2 1832 143 58 134 chrX 134497222 134497244 -28102686 - MSTA LTR MaLR -98 330 308 2200 93 26 29 chrX 134497244 134497555 -28102375 + AluSg SINE Alu 1 310 0 1832 143 58 134 chrX 134497555 134497899 -28102031 - MSTA LTR MaLR -120 308 1 244 260 110 94 chrX 134498164 134498291 -28101639 + L2 LINE L2 3134 3262 -10 185 0 40 0 chrX 134499519 134499544 -28100386 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 462 248 110 14 chrX 134499737 134499882 -28100048 - MIR SINE MIR -12 250 92 183 311 78 22 chrX 134499954 134500044 -28099886 + L2 LINE L2 2570 2664 -650 249 296 0 45 chrX 134500061 134500149 -28099781 + L2 LINE L2 3007 3090 -182 588 250 8 0 chrX 134500188 134500320 -28099610 - MIR SINE MIR 0 262 130 2475 70 0 7 chrX 134500472 134500773 -28099157 + AluSc SINE Alu 1 299 -10 272 336 23 31 chrX 134500937 134500996 -28098934 - MIR SINE MIR -116 146 88 977 130 65 113 chrX 134500996 134501226 -28098704 - MER20 DNA MER1_type 0 219 1 272 336 23 31 chrX 134501226 134501294 -28098636 - MIR SINE MIR -174 88 20 3665 167 45 38 chrX 134502107 134503517 -28096413 + L1MA9 LINE L1 4797 6217 -95 221 57 29 0 chrX 134503517 134503552 -28096378 + (TA)n Simple_repeat Simple_repeat 2 37 0 3665 167 45 38 chrX 134503552 134503569 -28096361 + L1MA9 LINE L1 6217 6232 -80 1919 154 7 3 chrX 134503630 134503928 -28096002 + AluJo SINE Alu 1 299 -13 363 267 120 93 chrX 134503935 134504289 -28095641 - L1ME4a LINE L1 -116 6005 5694 234 163 0 23 chrX 134504682 134504725 -28095205 - MIR SINE MIR -6 256 215 597 319 25 25 chrX 134505276 134505514 -28094416 - L3 LINE CR1 -1 1576 1339 272 298 229 27 chrX 134505561 134505749 -28094181 - L3 LINE CR1 -454 1123 898 1165 345 63 11 chrX 134505833 134506306 -28093624 - L3 LINE CR1 -849 728 231 657 162 0 0 chrX 134506334 134506433 -28093497 - AluSc SINE Alu -18 291 193 207 162 0 0 chrX 134508255 134508292 -28091638 + (TG)n Simple_repeat Simple_repeat 2 38 0 583 255 55 0 chrX 134508372 134508517 -28091413 + MIR SINE MIR 41 193 -69 234 0 0 0 chrX 134508606 134508632 -28091298 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 439 288 0 34 chrX 134509792 134509910 -28090020 + MIR SINE MIR 6 119 -143 1122 163 98 0 chrX 134510396 134510641 -28089289 + L1MD3 LINE L1 7727 7995 0 829 281 104 8 chrX 134510762 134511136 -28088794 - L1ME4a LINE L1 -210 5911 5502 1976 155 10 16 chrX 134511220 134511529 -28088401 - AluJo SINE Alu -4 308 2 1731 155 0 63 chrX 134511551 134511868 -28088062 - AluJo SINE Alu -15 297 1 21 36 0 0 chrX 134513278 134513306 -28086624 + AT_rich Low_complexity Low_complexity 1 28 0 680 283 31 14 chrX 134514258 134514481 -28085449 - MIR SINE MIR -16 246 20 1748 194 0 0 chrX 134514500 134514811 -28085119 - AluJo SINE Alu 0 311 1 358 253 172 20 chrX 134514947 134515243 -28084687 - L1ME4a LINE L1 -21 6100 5760 2116 108 27 7 chrX 134515243 134515539 -28084391 - AluSx SINE Alu -10 302 1 2321 101 0 3 chrX 134515933 134516240 -28083690 + AluSq SINE Alu 1 306 -7 439 161 20 0 chrX 134516269 134516367 -28083563 + L1ME4a LINE L1 5759 5860 -261 333 0 0 0 chrX 134516426 134516463 -28083467 + (TA)n Simple_repeat Simple_repeat 1 37 0 386 250 202 36 chrX 134516693 134516861 -28083069 - MIR SINE MIR -42 220 25 351 206 149 9 chrX 134517053 134517160 -28082770 + MIR SINE MIR 141 262 0 362 311 156 36 chrX 134517905 134518265 -28081665 + L2 LINE L2 1776 2178 -1136 1389 60 0 0 chrX 134518334 134518500 -28081430 - AluSg/x SINE Alu -10 302 137 305 294 76 0 chrX 134518546 134518665 -28081265 - MIR SINE MIR -30 232 105 250 235 0 0 chrX 134520104 134520155 -28079775 + L2 LINE L2 3256 3306 -7 367 269 117 14 chrX 134520840 134520985 -28078945 - MIR3 SINE MIR -7 201 42 2102 182 106 136 chrX 134522044 134522873 -28077057 + L3 LINE CR1 410 1213 -364 193 300 100 27 chrX 134523003 134523113 -28076817 + L2 LINE L2 3155 3272 0 203 103 26 0 chrX 134523442 134523481 -28076449 + (TA)n Simple_repeat Simple_repeat 2 41 0 705 230 62 55 chrX 134523527 134523784 -28076146 + L1ME4a LINE L1 5552 5810 -311 352 275 79 0 chrX 134523802 134523980 -28075950 + L1ME4a LINE L1 5884 6075 -46 206 146 0 55 chrX 134524158 134524213 -28075717 + (TTTAA)n Simple_repeat Simple_repeat 1 52 0 2358 38 0 72 chrX 134524292 134524611 -28075319 - AluY SINE Alu -15 296 1 180 175 75 0 chrX 134524685 134524725 -28075205 + L2 LINE L2 3223 3265 -7 21 36 0 0 chrX 134525008 134525036 -28074894 + AT_rich Low_complexity Low_complexity 1 28 0 258 32 0 0 chrX 134527786 134527817 -28072113 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2047 112 0 11 chrX 134527819 134528104 -28071826 - AluSq SINE Alu -31 282 1 296 207 15 89 chrX 134528104 134528239 -28071691 + L1ME4a LINE L1 5671 5769 -352 897 99 0 0 chrX 134528243 134528354 -28071576 - AluSx SINE Alu -16 296 186 683 88 0 0 chrX 134528354 134528445 -28071485 - AluSx SINE Alu -221 91 1 381 275 145 19 chrX 134528446 134528662 -28071268 + L1ME4a LINE L1 5816 6074 -47 1991 147 0 0 chrX 134528662 134528948 -28070982 - AluSx SINE Alu -7 305 20 381 275 145 19 chrX 134528948 134529000 -28070930 + L1ME4a LINE L1 6074 6118 -3 210 238 0 0 chrX 134529335 134529377 -28070553 - MIR3 SINE MIR -21 187 146 230 245 0 0 chrX 134529437 134529486 -28070444 - MIR SINE MIR -84 124 76 2350 90 0 0 chrX 134529670 134529970 -28069960 + AluSc SINE Alu 2 301 -8 21 0 0 0 chrX 134529972 134529993 -28069937 + AT_rich Low_complexity Low_complexity 1 21 0 2328 91 0 3 chrX 134531305 134531602 -28068328 + AluSx SINE Alu 1 296 -16 22 35 0 0 chrX 134531602 134531631 -28068299 + AT_rich Low_complexity Low_complexity 1 29 0 230 273 73 0 chrX 134531799 134531854 -28068076 - L2 LINE L2 -67 3205 3147 906 125 0 22 chrX 134534058 134534194 -28065736 + FLAM_C SINE Alu 1 133 0 2589 53 0 0 chrX 134534202 134534501 -28065429 + AluY SINE Alu 1 299 -12 335 295 125 0 chrX 134534600 134534712 -28065218 + MIR SINE MIR 128 253 -9 187 271 167 49 chrX 134534951 134535017 -28064913 + MIR3 SINE MIR 22 79 -129 2202 122 6 3 chrX 134535017 134535328 -28064602 - AluSx SINE Alu 0 312 1 187 271 167 49 chrX 134535328 134535405 -28064525 + MIR3 SINE MIR 79 182 -26 180 125 0 0 chrX 134535638 134535670 -28064260 + (TG)n Simple_repeat Simple_repeat 1 32 0 667 321 16 45 chrX 134535913 134536221 -28063709 + L3 LINE CR1 1147 1445 -132 332 275 138 0 chrX 134536324 134536433 -28063497 + L2 LINE L2 3139 3262 -10 2366 90 0 0 chrX 134536550 134536850 -28063080 - AluSx SINE Alu -12 300 1 1986 113 33 0 chrX 134537265 134537580 -28062350 + AluSx SINE Alu 1 324 0 202 195 9 71 chrX 134537885 134537998 -28061932 + A-rich Low_complexity Low_complexity 1 106 0 2303 101 0 3 chrX 134538138 134538434 -28061496 - AluSq SINE Alu -18 295 1 332 207 190 35 chrX 134539340 134539456 -28060474 - MIR SINE MIR -14 248 115 38 39 0 0 chrX 134539502 134539554 -28060376 + AT_rich Low_complexity Low_complexity 1 52 0 1601 192 10 29 chrX 134539589 134539768 -28060162 - AluJo SINE Alu -11 301 129 234 0 0 0 chrX 134539768 134539794 -28060136 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1601 192 10 29 chrX 134539794 134539921 -28060009 - AluJo SINE Alu -183 129 1 2253 138 12 60 chrX 134539926 134540349 -28059581 - L1MB7 LINE L1 0 6184 5785 1703 181 0 31 chrX 134540349 134540528 -28059402 - AluJo SINE Alu -2 310 144 2134 128 0 7 chrX 134540528 134540832 -28059098 - AluSq SINE Alu -11 302 1 1703 181 0 31 chrX 134540832 134540972 -28058958 - AluJo SINE Alu -168 144 1 2253 138 12 60 chrX 134540972 134541032 -28058898 - L1MB7 LINE L1 -399 5785 5724 485 305 85 4 chrX 134541032 134541304 -28058626 + L1ME4a LINE L1 5633 5926 -195 618 92 0 15 chrX 134541339 134541579 -28058351 + AluY SINE Alu 1 306 -5 182 275 0 0 chrX 134541703 134541743 -28058187 - L2 LINE L2 -13 3259 3220 6341 55 4 0 chrX 134542686 134543482 -28056448 + L1PA7 LINE L1 5356 6154 0 903 211 5 0 chrX 134543494 134543698 -28056232 + L1MA7 LINE L1 5053 5257 -889 782 83 92 0 chrX 134543708 134543828 -28056102 + MER85 DNA T2_type 9 139 0 4355 134 18 17 chrX 134543831 134544182 -28055748 + L1MA7 LINE L1 5254 5603 -688 1486 136 0 5 chrX 134544182 134544403 -28055527 + AluJb SINE Alu 82 301 -11 4355 134 18 17 chrX 134544403 134544971 -28054959 + L1MA7 LINE L1 5603 6280 -11 896 123 0 36 chrX 134545043 134545181 -28054749 - FLAM_C SINE Alu 0 133 1 344 177 152 0 chrX 134545216 134545295 -28054635 + MIR SINE MIR 109 199 -63 196 333 0 0 chrX 134545313 134545391 -28054539 + MIR SINE MIR 178 255 -7 501 255 98 22 chrX 134546775 134546959 -28052971 + MIR SINE MIR 63 260 -2 205 327 0 0 chrX 134548658 134548710 -28051220 - MIR SINE MIR -161 101 50 216 0 0 0 chrX 134548848 134548872 -28051058 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chrX 134550523 134550544 -28049386 + AT_rich Low_complexity Low_complexity 1 21 0 2269 111 0 3 chrX 134551588 134551885 -28048045 - AluSx SINE Alu -16 296 1 2331 95 3 0 chrX 134552968 134553262 -28046668 - AluSq SINE Alu -18 295 1 844 260 94 52 chrX 134553374 134553948 -28045982 - L1ME4a LINE L1 -1 6120 5523 257 273 30 15 chrX 134553962 134554028 -28045902 - MIR SINE MIR -112 150 84 280 333 52 30 chrX 134555612 134555747 -28044183 - L2 LINE L2 -6 3307 3170 207 330 0 45 chrX 134556838 134556926 -28043004 - L3b LINE CR1 -214 1369 1286 1040 144 0 13 chrX 134559300 134559453 -28040477 + FRAM SINE Alu 1 151 -25 246 298 0 0 chrX 134559891 134559948 -28039982 - L2 LINE L2 -12 3260 3204 319 308 199 55 chrX 134559965 134560750 -28039180 - L2 LINE L2 -706 2608 1711 2357 70 0 26 chrX 134561429 134561742 -28038188 - AluY SINE Alu -6 305 1 246 306 186 8 chrX 134562854 134562978 -28036952 + L2 LINE L2 3127 3272 0 4760 112 60 9 chrX 134563042 134563828 -28036102 - LTR1B LTR ERV1 0 826 1 2410 92 0 0 chrX 134564197 134564492 -28035438 - AluSx SINE Alu -17 295 1 2830 7 0 0 chrX 134567453 134567759 -28032171 + AluYb8 SINE Alu 1 306 -12 198 0 0 0 chrX 134567783 134567805 -28032125 + (TG)n Simple_repeat Simple_repeat 2 23 0 405 178 222 0 chrX 134568536 134568626 -28031304 + MER91C DNA MER1_type 6 115 -25 2148 89 0 38 chrX 134568688 134569009 -28030921 - AluSg SINE Alu 0 310 1 2295 136 80 5 chrX 134569436 134569834 -28030096 - MSTA LTR MaLR 0 428 1 1933 156 25 0 chrX 134570305 134570588 -28029342 - AluJb SINE Alu -22 290 1 691 308 36 8 chrX 134570677 134570930 -28029000 + MIR SINE MIR 1 260 -2 258 192 51 77 chrX 134571096 134571174 -28028756 + MIR SINE MIR 113 188 -74 1792 171 88 5 chrX 134571251 134571637 -28028293 + MSTB1 LTR MaLR 15 432 0 2674 46 0 0 chrX 134572301 134572608 -28027322 - AluY SINE Alu -4 307 1 296 313 14 5 chrX 134573056 134573170 -28026760 + MER91 DNA MER1_type 80 189 -1 408 362 22 0 chrX 134573765 134573903 -28026027 - MIR3 SINE MIR -35 173 33 257 264 155 8 chrX 134574673 134574802 -28025128 - L1ME4a LINE L1 -13 6108 5961 23 33 0 0 chrX 134574975 134575005 -28024925 + AT_rich Low_complexity Low_complexity 1 30 0 3781 199 25 30 chrX 134575005 134575915 -28024015 + L1MA9 LINE L1 5369 6274 -38 1766 196 3 13 chrX 134575942 134576253 -28023677 + AluJb SINE Alu 1 308 -4 747 240 59 19 chrX 134576292 134576563 -28023367 - L1ME4a LINE L1 -70 6051 5770 520 255 65 0 chrX 134576587 134576740 -28023190 - L1ME4a LINE L1 -575 5546 5384 316 284 46 28 chrX 134576917 134577026 -28022904 + L2 LINE L2 3199 3309 -4 382 262 24 18 chrX 134577441 134577572 -28022358 - MIR SINE MIR -66 142 9 329 353 108 0 chrX 134577691 134577830 -28022100 + L2 LINE L2 3117 3270 -2 535 295 94 7 chrX 134578182 134578331 -28021599 - MIR SINE MIR -81 181 20 216 0 0 0 chrX 134578398 134578422 -28021508 + (T)n Simple_repeat Simple_repeat 1 24 0 205 344 80 61 chrX 134579312 134579524 -28020406 - L3b LINE CR1 -6 1577 1362 1979 103 3 43 chrX 134580288 134580588 -28019342 - AluY SINE Alu -13 298 11 218 65 0 65 chrX 134581194 134581240 -28018690 + (A)n Simple_repeat Simple_repeat 1 43 0 369 274 264 16 chrX 134582106 134582145 -28017785 - L3b LINE CR1 -102 1481 1453 1493 39 0 0 chrX 134582145 134582323 -28017607 + AluY SINE Alu 132 309 -2 369 274 264 16 chrX 134582323 134582586 -28017344 - L3b LINE CR1 -130 1453 1104 1525 161 79 0 chrX 134586975 134587280 -28012650 - L1MA9 LINE L1 -2 6310 5982 2373 213 11 24 chrX 134587657 134587809 -28012121 - MLT1F LTR MaLR 0 542 390 2479 164 29 5 chrX 134587809 134588225 -28011705 - MSTB LTR MaLR 0 426 1 2373 213 11 24 chrX 134588225 134588621 -28011309 - MLT1F LTR MaLR -152 390 1 189 107 0 0 chrX 134588660 134588688 -28011242 + (TAA)n Simple_repeat Simple_repeat 3 30 0 303 70 0 53 chrX 134588916 134588973 -28010957 - MLT2A1 LTR ERVL 0 444 391 280 117 17 17 chrX 134588985 134589045 -28010885 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 27 0 0 0 chrX 134589055 134589082 -28010848 + AT_rich Low_complexity Low_complexity 1 27 0 2131 107 7 3 chrX 134589082 134589372 -28010558 - AluSx SINE Alu -20 292 2 2630 92 21 5 chrX 134589373 134589753 -28010177 - MLT2A1 LTR ERVL -58 386 1 1537 138 56 69 chrX 134590048 134590352 -28009578 + AluJo SINE Alu 1 300 -12 495 73 0 0 chrX 134590749 134590817 -28009113 + (ATG)n Simple_repeat Simple_repeat 2 69 0 561 258 123 18 chrX 134590821 134590984 -28008946 - MIR SINE MIR -10 252 73 385 307 0 0 chrX 134591274 134591377 -28008553 - MIR SINE MIR -104 104 16 2482 50 13 7 chrX 134591461 134591759 -28008171 - AluY SINE Alu -11 300 1 795 106 8 0 chrX 134591910 134592033 -28007897 - L1MA9 LINE L1 -4 6308 6185 1828 186 76 68 chrX 134594025 134594540 -28005390 - LTR40a LTR ERVL 0 519 1 229 349 28 0 chrX 134595261 134595367 -28004563 - L3 LINE CR1 -7 1570 1462 396 251 86 25 chrX 134595367 134595530 -28004400 + MIR3 SINE MIR 18 190 -18 403 184 129 7 chrX 134597254 134597401 -28002529 + L1ME4a LINE L1 5722 5886 -235 264 206 0 0 chrX 134597475 134597538 -28002392 + (CA)n Simple_repeat Simple_repeat 2 64 0 343 305 30 23 chrX 134597810 134597941 -28001989 + L2 LINE L2 3137 3268 -4 513 280 39 68 chrX 134599011 134599098 -28000832 + MIR SINE MIR 1 89 -173 2171 129 10 0 chrX 134599098 134599407 -28000523 - AluSx SINE Alu 0 312 1 513 280 39 68 chrX 134599407 134599526 -28000404 + MIR SINE MIR 89 201 -61 770 162 14 0 chrX 134599526 134599674 -28000256 - L1MC/D LINE L1 -927 5432 5283 270 0 0 0 chrX 134599674 134599704 -28000226 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1915 112 4 0 chrX 134599709 134599959 -27999971 - AluSp SINE Alu -62 251 1 1302 237 94 27 chrX 134599969 134600445 -27999485 - L1MD2 LINE L1 -2 6357 5850 1907 218 58 53 chrX 134600452 134600701 -27999229 - L1MC/D LINE L1 -867 5279 5033 2398 100 3 0 chrX 134600701 134601011 -27998919 - AluSq SINE Alu -2 311 1 1907 218 58 53 chrX 134601011 134601503 -27998427 - L1MC/D LINE L1 -1113 5033 4534 868 218 17 4 chrX 134601505 134601739 -27998191 - L1MC/D LINE L1 -3663 2483 2247 * 2376 213 34 77 chrX 134601714 134602425 -27997505 - L1M4 LINE L1 -3279 3365 2625 1871 158 16 24 chrX 134602425 134602805 -27997125 - L1MA7 LINE L1 -3 6288 5912 2376 213 34 77 chrX 134602805 134602950 -27996980 - L1M4 LINE L1 -4019 2625 2537 2211 121 0 10 chrX 134602950 134603263 -27996667 + AluSx SINE Alu 1 310 -2 2376 213 34 77 chrX 134603263 134603432 -27996498 - L1M4 LINE L1 -4107 2537 2362 1278 114 6 0 chrX 134603436 134603612 -27996318 - AluSp SINE Alu -3 310 134 2233 115 0 0 chrX 134603612 134603907 -27996023 - AluSx SINE Alu -17 295 1 6372 214 32 30 chrX 134603908 134604287 -27995643 - L1M4 LINE L1 -4275 2371 1994 1001 138 18 0 chrX 134604287 134604454 -27995476 - L1MB5 LINE L1 -12 6162 5993 6372 214 32 30 chrX 134604454 134606254 -27993676 - L1M4 LINE L1 -4652 1994 93 2117 106 0 23 chrX 134606254 134606555 -27993375 + AluY SINE Alu 2 295 -16 6372 214 32 30 chrX 134606555 134606601 -27993329 - L1M4 LINE L1 -6553 93 49 23 0 0 0 chrX 134606622 134606645 -27993285 + AT_rich Low_complexity Low_complexity 1 23 0 1907 174 0 6 chrX 134606669 134607030 -27992900 - L1MA6 LINE L1 -5 6295 5937 1539 207 86 51 chrX 134607054 134607418 -27992512 - L1MDa LINE L1 -3858 2682 2333 1901 121 38 17 chrX 134607418 134607708 -27992222 - AluSx SINE Alu -14 298 3 1539 207 86 51 chrX 134607708 134608234 -27991696 - L1MDa LINE L1 -4207 2333 1750 2468 93 0 0 chrX 134608249 134608561 -27991369 - AluSx SINE Alu 0 312 1 296 228 13 0 chrX 134608564 134608643 -27991287 - L1MDa LINE L1 -5429 1114 1035 2881 169 41 33 chrX 134608707 134609412 -27990518 - Tigger7 DNA MER2_type -1 2586 1 221 282 204 19 chrX 134609753 134609856 -27990074 - MIR SINE MIR -101 161 40 666 259 74 11 chrX 134611459 134611648 -27988282 + MIR SINE MIR 12 212 -50 441 280 17 25 chrX 134611663 134611781 -27988149 - MIR SINE MIR -138 124 8 184 369 15 46 chrX 134611825 134611955 -27987975 - L3 LINE CR1 -2 1575 1450 2070 43 12 0 chrX 134612156 134612412 -27987518 + L1PA3 LINE L1 5894 6152 -3 225 0 0 0 chrX 134613904 134613929 -27986001 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 235 296 25 50 chrX 134614652 134614811 -27985119 + L2 LINE L2 2008 2162 -1152 278 337 0 0 chrX 134614818 134614916 -27985014 + MIR SINE MIR 164 261 -1 1588 186 19 32 chrX 134615053 134615364 -27984566 + AluJo SINE Alu 1 307 -5 225 0 0 0 chrX 134615913 134615938 -27983992 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 2237 99 0 0 chrX 134616540 134616852 -27983078 + AluSx SINE Alu 1 312 0 207 132 26 0 chrX 134616867 134616905 -27983025 + MIR3 SINE MIR 163 201 -7 198 58 0 77 chrX 134619933 134619985 -27979945 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 182 150 25 0 chrX 134620100 134620140 -27979790 + CT-rich Low_complexity Low_complexity 3 43 0 552 191 14 64 chrX 134620243 134620384 -27979546 + MER94 DNA DNA 1 134 0 218 257 100 0 chrX 134620398 134620468 -27979462 - MIR3 SINE MIR -14 194 118 296 57 0 75 chrX 134620527 134620569 -27979361 - AluY SINE Alu -1 307 268 1764 66 0 0 chrX 134620569 134620782 -27979148 - AluY SINE Alu -96 215 3 417 242 327 12 chrX 134622669 134622834 -27977096 - MIR SINE MIR -44 218 2 932 215 5 0 chrX 134623422 134623608 -27976322 - MER5A DNA MER1_type 0 189 3 261 175 0 35 chrX 134623666 134623723 -27976207 + MIR SINE MIR 201 255 -7 2547 135 46 5 chrX 134623938 134624353 -27975577 - MSTB1 LTR MaLR 0 432 1 2320 59 0 0 chrX 134624460 134624733 -27975197 + AluY SINE Alu 1 273 -38 334 37 0 37 chrX 134624749 134624803 -27975127 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 248 230 40 0 chrX 134625442 134625516 -27974414 + MER116 DNA Mariner 1 77 -3 724 255 72 43 chrX 134625604 134625839 -27974091 - MIR SINE MIR -1 261 20 21 36 0 0 chrX 134626542 134626570 -27973360 + AT_rich Low_complexity Low_complexity 1 28 0 230 271 198 51 chrX 134626820 134626997 -27972933 - L2 LINE L2 -925 2389 2187 374 273 8 33 chrX 134627022 134627143 -27972787 - MER5B DNA MER1_type -49 129 12 345 24 0 0 chrX 134627387 134627429 -27972501 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chrX 134627481 134627506 -27972424 + AT_rich Low_complexity Low_complexity 1 25 0 2324 87 6 19 chrX 134628185 134628496 -27971434 + AluSq SINE Alu 3 309 -4 279 0 0 0 chrX 134629030 134629061 -27970869 + (TTG)n Simple_repeat Simple_repeat 2 32 0 219 310 7 120 chrX 134631694 134631836 -27968094 - L2 LINE L2 -215 3057 2932 200 291 177 0 chrX 134631834 134631913 -27968017 - L2 LINE L2 -34 3238 3146 * 1984 155 0 0 chrX 134632008 134632298 -27967632 - AluJb SINE Alu -22 290 1 890 201 11 17 chrX 134632298 134632470 -27967460 + MER45A DNA AcHobo 6 178 0 2006 154 3 10 chrX 134633549 134633860 -27966070 - AluSx SINE Alu -3 309 1 307 354 61 39 chrX 134634069 134634250 -27965680 - L2 LINE L2 -31 3241 3057 2557 48 3 3 chrX 134635164 134635474 -27964456 + AluY SINE Alu 2 311 0 351 336 42 0 chrX 134636351 134636470 -27963460 - L2 LINE L2 -12 3260 3137 494 275 16 81 chrX 134639049 134639260 -27960670 - L2 LINE L2 -5 3308 3114 1696 177 14 0 chrX 134639260 134639537 -27960393 + AluSx SINE Alu 32 312 0 494 275 16 81 chrX 134639537 134639572 -27960358 - L2 LINE L2 -199 3114 3078 347 105 18 0 chrX 134639572 134639629 -27960301 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 347 352 0 16 chrX 134639734 134639859 -27960071 - MIR3 SINE MIR -73 135 13 206 246 36 100 chrX 134639882 134639992 -27959938 - L2 LINE L2 -12 3301 3199 234 240 0 0 chrX 134641195 134641245 -27958685 + CT-rich Low_complexity Low_complexity 1 50 0 305 151 0 0 chrX 134642508 134642561 -27957369 + MIR SINE MIR 81 133 -75 459 113 0 66 chrX 134642631 134642737 -27957193 + (GGA)n Simple_repeat Simple_repeat 2 100 0 442 84 42 11 chrX 134643270 134643365 -27956565 + (TA)n Simple_repeat Simple_repeat 2 99 0 214 173 27 6 chrX 134643392 134643438 -27956492 + L2 LINE L2 3191 3279 -34 373 306 49 1 chrX 134643583 134643715 -27956215 - MIR3 SINE MIR -43 165 43 288 77 0 0 chrX 134643727 134643766 -27956164 + (CAGAA)n Simple_repeat Simple_repeat 2 40 0 2446 134 21 10 chrX 134644522 134644955 -27954975 - MER61C LTR ERV1 0 434 13 2247 105 3 10 chrX 134644984 134645297 -27954633 - AluSq SINE Alu -2 311 1 202 220 0 102 chrX 134645778 134645837 -27954093 + L2 LINE L2 3251 3303 -10 183 245 19 0 chrX 134645828 134645881 -27954049 - MIR SINE MIR -13 249 196 * 547 206 51 74 chrX 134645933 134646108 -27953822 - MIR SINE MIR -70 192 22 1256 142 4 29 chrX 134646462 134646701 -27953229 + L1MB7 LINE L1 5931 6163 -21 235 361 56 37 chrX 134649514 134649622 -27950308 + L2 LINE L2 3143 3252 -20 1060 225 19 19 chrX 134651805 134652067 -27947863 - MIR SINE MIR 0 262 1 188 250 65 43 chrX 134652210 134652228 -27947702 - L2 LINE L2 -1262 2052 2033 283 329 14 48 chrX 134652228 134652374 -27947556 + MIR SINE MIR 1 141 -121 192 286 51 31 chrX 134652740 134652838 -27947092 + L3 LINE CR1 351 450 -1127 200 313 16 16 chrX 134653466 134653530 -27946400 + MIR3 SINE MIR 10 73 -135 607 321 0 6 chrX 134653569 134653737 -27946193 - MER5A DNA MER1_type -5 184 18 2114 95 0 4 chrX 134654265 134654538 -27945392 + AluSg SINE Alu 37 308 -2 22 35 0 0 chrX 134655529 134655558 -27944372 + AT_rich Low_complexity Low_complexity 1 29 0 309 218 71 59 chrX 134656118 134656288 -27943642 + L1ME4a LINE L1 5906 6077 -44 815 261 35 19 chrX 134656544 134656801 -27943129 + MIR SINE MIR 2 262 0 260 300 200 0 chrX 134657471 134657571 -27942359 - MIR3 SINE MIR -4 204 85 22 0 0 0 chrX 134658131 134658153 -27941777 + AT_rich Low_complexity Low_complexity 1 22 0 1442 106 34 0 chrX 134658153 134658360 -27941570 + AluSq SINE Alu 98 311 -2 582 254 83 30 chrX 134658497 134658666 -27941264 + MIR SINE MIR 53 230 -32 1809 144 10 7 chrX 134661123 134661415 -27938515 - AluJb SINE Alu -19 293 1 2591 186 13 22 chrX 134661842 134662385 -27937545 - L1MA10 LINE L1 -14 6320 5783 215 225 0 0 chrX 134662385 134662425 -27937505 + (TG)n Simple_repeat Simple_repeat 2 41 0 2307 109 0 3 chrX 134662439 134662751 -27937179 - AluSx SINE Alu -1 311 1 671 128 2 9 chrX 134662754 134662886 -27937044 - L1MA10 LINE L1 -521 5779 5648 1016 284 28 0 chrX 134664304 134664558 -27935372 + MIR SINE MIR 2 262 0 247 217 145 60 chrX 134664658 134664741 -27935189 + MIR SINE MIR 64 153 -109 4521 106 30 3 chrX 134666982 134667654 -27932276 - L1PA16 LINE L1 -1 6165 5476 1422 131 18 10 chrX 134668690 134669122 -27930808 - L1PA16 LINE L1 -671 5495 5061 198 71 0 0 chrX 134669795 134669823 -27930107 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 5340 183 27 22 chrX 134670437 134672319 -27927611 - L1MC2 LINE L1 -2 6342 4456 1360 209 6 42 chrX 134672316 134672675 -27927255 - L1MC2 LINE L1 -1962 4184 3839 * 5420 100 9 1 chrX 134672691 134673492 -27926438 - L1PA10 LINE L1 -2 6166 5360 681 250 10 65 chrX 134673967 134674167 -27925763 + L3 LINE CR1 995 1183 -394 362 292 36 21 chrX 134675167 134675312 -27924618 + MIR SINE MIR 56 200 -56 227 361 0 0 chrX 134675406 134675478 -27924452 + L2 LINE L2 3201 3272 0 255 31 0 0 chrX 134675661 134675693 -27924237 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 562 267 184 9 chrX 134678071 134678288 -27921642 + MIR SINE MIR 8 262 0 430 207 38 78 chrX 134678337 134678474 -27921456 - MIR SINE MIR -62 146 43 820 169 35 0 chrX 134679065 134679237 -27920693 - L1MA4 LINE L1 -5 6295 6118 1330 158 158 11 chrX 134679240 134679358 -27920572 + AluJo SINE Alu 1 100 -212 180 0 0 0 chrX 134679358 134679378 -27920552 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1330 158 158 11 chrX 134679378 134679531 -27920399 + AluJo SINE Alu 100 312 0 228 286 0 0 chrX 134679547 134679617 -27920313 - L1MA3 LINE L1 -177 6128 6059 185 167 0 48 chrX 134679619 134679661 -27920269 - MIR SINE MIR -177 85 46 219 222 0 0 chrX 134680078 134680123 -27919807 - L2 LINE L2 -5 3308 3264 2052 124 3 0 chrX 134680282 134680616 -27919314 - AluSx SINE Alu 0 335 1 421 290 46 15 chrX 134680705 134680836 -27919094 - L2 LINE L2 -5 3267 3133 488 313 78 22 chrX 134680874 134681053 -27918877 - MIR3 SINE MIR -17 191 3 380 241 32 76 chrX 134682004 134682116 -27917814 - MER5A DNA MER1_type -5 184 78 2040 109 0 11 chrX 134682116 134682428 -27917502 - AluSx SINE Alu 0 313 5 380 241 32 76 chrX 134682428 134682472 -27917458 - MER5A DNA MER1_type -111 78 34 400 258 10 0 chrX 134682484 134682581 -27917349 - MIR3 SINE MIR -52 156 59 236 243 43 14 chrX 134683607 134683677 -27916253 - L2 LINE L2 -4 3268 3197 402 278 0 11 chrX 134683722 134683812 -27916118 - MIR SINE MIR -172 90 2 22 0 0 0 chrX 134683875 134683897 -27916033 + AT_rich Low_complexity Low_complexity 1 22 0 2238 214 9 13 chrX 134685152 134685614 -27914316 - LTR40b LTR ERVL -2 460 1 7239 47 3 0 chrX 134686239 134687609 -27912321 - L1PA7 LINE L1 -3 6151 4777 269 85 0 43 chrX 134687609 134687656 -27912274 + L1PA7 LINE L1 4721 4765 -1381 500 267 37 0 chrX 134689626 134689761 -27910169 - MIR SINE MIR -13 249 110 719 247 0 0 chrX 134690124 134690282 -27909648 - MLT1B LTR MaLR -46 344 187 200 205 0 0 chrX 134690292 134690331 -27909599 + GA-rich Low_complexity Low_complexity 1 39 0 229 183 0 50 chrX 134690337 134690397 -27909533 - MLT1B LTR MaLR -202 172 116 243 0 0 0 chrX 134690516 134690543 -27909387 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 27 81 0 0 chrX 134690576 134690638 -27909292 + AT_rich Low_complexity Low_complexity 1 62 0 341 348 37 24 chrX 134691464 134691496 -27908434 + MIR SINE MIR 20 50 -212 1610 166 33 29 chrX 134691496 134691681 -27908249 - AluJb SINE Alu -4 308 120 238 24 0 49 chrX 134691681 134691722 -27908208 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1610 166 33 29 chrX 134691722 134691843 -27908087 - AluJb SINE Alu -192 120 1 341 348 37 24 chrX 134691843 134691974 -27907956 + MIR SINE MIR 50 185 -77 832 128 9 123 chrX 134692190 134692401 -27907529 - Tigger7 DNA MER2_type 0 2487 2301 1851 142 14 14 chrX 134693143 134693438 -27906492 + AluJo SINE Alu 1 295 -17 3085 147 25 2 chrX 134693868 134694398 -27905532 - L1MC1 LINE L1 -6 6327 5786 7712 194 36 38 chrX 134694483 134695430 -27904500 - L1MB7 LINE L1 0 6184 5237 2137 138 0 0 chrX 134695430 134695726 -27904204 - AluJo SINE Alu -16 296 1 7712 194 36 38 chrX 134695726 134696664 -27903266 - L1MB7 LINE L1 -947 5237 4299 183 42 0 0 chrX 134696664 134696688 -27903242 + (GA)n Simple_repeat Simple_repeat 1 24 0 7712 194 36 38 chrX 134696688 134697947 -27901983 - L1MB7 LINE L1 -1885 4299 3056 2140 136 3 19 chrX 134697956 134698316 -27901614 - L1PB3 LINE L1 -2 6152 5799 1439 144 35 0 chrX 134698317 134698546 -27901384 + AluJb SINE Alu 70 306 -6 395 292 79 34 chrX 134700411 134700589 -27899341 - MIR3 SINE MIR -6 202 17 343 353 118 23 chrX 134701771 134702117 -27897813 - L2 LINE L2 -8 3264 2886 280 73 12 85 chrX 134702994 134703076 -27896854 + (TTCTCC)n Simple_repeat Simple_repeat 4 79 0 291 304 13 0 chrX 134703675 134703754 -27896176 - MIR3 SINE MIR -27 181 102 2278 97 0 13 chrX 134703844 134704143 -27895787 - AluSq SINE Alu -18 295 1 639 267 6 63 chrX 134704224 134704463 -27895467 - MIR SINE MIR -15 247 25 248 68 0 23 chrX 134704635 134704679 -27895251 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 850 113 0 57 chrX 134706025 134706166 -27893764 - FLAM_C SINE Alu 0 133 1 438 291 97 8 chrX 134706681 134706815 -27893115 - MIR3 SINE MIR -5 203 58 445 263 111 51 chrX 134707194 134707411 -27892519 + MIR SINE MIR 29 258 -4 2647 142 22 5 chrX 134707523 134707940 -27891990 - MSTB LTR MaLR -2 424 1 317 291 34 0 chrX 134708075 134708192 -27891738 + MIR3 SINE MIR 88 208 0 1071 223 63 6 chrX 134709314 134709646 -27890284 - L1M4 LINE L1 -847 5797 5447 2166 196 81 29 chrX 134709668 134710361 -27889569 - L1M4 LINE L1 -2392 4252 3524 5733 89 45 6 chrX 134710364 134710766 -27889164 - L1PB2 LINE L1 -2 6149 5764 2348 104 48 25 chrX 134710766 134711122 -27888808 - THE1B LTR MaLR 0 364 1 5733 89 45 6 chrX 134711122 134711705 -27888225 - L1PB2 LINE L1 -387 5764 5128 993 17 0 0 chrX 134711765 134711881 -27888049 - L1PA2 LINE L1 0 6155 6040 562 28 0 0 chrX 134711881 134711953 -27887977 + L1P LINE L1 5323 5394 -761 * 3020 214 42 29 chrX 134711950 134713255 -27886675 - L1M4 LINE L1 -3131 3513 2193 803 168 0 0 chrX 134713293 134713424 -27886506 - AluJb SINE Alu -3 309 179 553 303 0 0 chrX 134713459 134713634 -27886296 - L1M4 LINE L1 -4640 2006 1832 1743 190 68 34 chrX 134713634 134714076 -27885854 - LTR2B LTR ERV1 0 490 34 5322 220 26 24 chrX 134714099 134714145 -27885785 - L1M4 LINE L1 -4813 1833 1789 2106 139 0 10 chrX 134714145 134714455 -27885475 + AluSx SINE Alu 1 307 -5 5322 220 26 24 chrX 134714455 134715909 -27884021 - L1M4 LINE L1 -4857 1789 308 2033 164 35 34 chrX 134715912 134716456 -27883474 - MLT2A2 LTR ERVL -7 547 1 1212 180 11 40 chrX 134716456 134716728 -27883202 - L1M4 LINE L1 -6233 309 46 217 240 40 0 chrX 134716728 134716778 -27883152 + MIR SINE MIR 208 259 -3 41 36 0 0 chrX 134716788 134716843 -27883087 + AT_rich Low_complexity Low_complexity 1 55 0 10619 189 56 23 chrX 134716879 134718496 -27881434 - Charlie1 DNA MER1_type -19 2742 1005 2288 98 3 16 chrX 134718496 134718803 -27881127 - AluSq SINE Alu -4 309 7 10619 189 56 23 chrX 134718803 134719803 -27880127 - Charlie1 DNA MER1_type -1756 1005 39 212 304 0 0 chrX 134719811 134719867 -27880063 - L2 LINE L2 -641 2673 2618 938 171 74 0 chrX 134719882 134720057 -27879873 - MER5A DNA MER1_type 0 189 2 336 250 272 0 chrX 134720078 134720170 -27879760 + MER5A DNA MER1_type 73 189 0 291 328 89 42 chrX 134720170 134720423 -27879507 - L2 LINE L2 -702 2612 2348 526 358 0 20 chrX 134720979 134721180 -27878750 - MIR SINE MIR -65 197 1 310 284 82 22 chrX 134722230 134722462 -27877468 + L1ME2 LINE L1 4706 4951 -1195 556 176 10 0 chrX 134722770 134722872 -27877058 - L1PA16 LINE L1 -9 6157 6055 360 272 72 25 chrX 134722886 134723165 -27876765 + L1ME2 LINE L1 4958 5249 -897 299 188 229 18 chrX 134723192 134723362 -27876568 + L1ME2 LINE L1 5704 5909 -255 257 247 82 0 chrX 134723474 134723571 -27876359 + L1ME2 LINE L1 6036 6140 -24 21 36 0 0 chrX 134723682 134723710 -27876220 + AT_rich Low_complexity Low_complexity 1 28 0 5946 121 0 11 chrX 134724041 134725315 -27874615 - L1PA16 LINE L1 -13 6153 4887 559 231 0 118 chrX 134725790 134725938 -27873992 + MIR SINE MIR 20 142 -120 1486 171 36 4 chrX 134725938 134726214 -27873716 + AluJb SINE Alu 24 307 0 559 231 0 118 chrX 134726214 134726259 -27873671 + MIR SINE MIR 142 191 -71 1034 234 65 54 chrX 134726577 134727083 -27872847 + MER39 LTR ERV1 5 648 0 1583 83 65 0 chrX 134727320 134727536 -27872394 - MER30 DNA MER1_type 0 230 1 2520 74 0 0 chrX 134727647 134727946 -27871984 + AluY SINE Alu 1 299 -12 411 261 46 23 chrX 134729979 134730109 -27869821 + MIR SINE MIR 24 156 -106 254 180 16 0 chrX 134730362 134730423 -27869507 + GA-rich Low_complexity Low_complexity 4 65 0 1837 151 4 0 chrX 134730509 134730802 -27869128 - AluJb SINE Alu 0 304 11 478 192 50 42 chrX 134732188 134732308 -27867622 - AluSp/q SINE Alu -31 282 162 488 291 70 23 chrX 134733845 134734017 -27865913 - L2 LINE L2 -160 3112 2933 584 231 71 6 chrX 134735525 134735694 -27864236 + L1ME4a LINE L1 5942 6121 0 1083 151 0 6 chrX 134735966 134736138 -27863792 - L1MB8 LINE L1 -5 6173 6003 1684 121 76 28 chrX 134736138 134736419 -27863511 + THE1C LTR MaLR 78 375 0 1005 206 73 66 chrX 134737250 134737641 -27862289 - MSTB2 LTR MaLR 0 457 3 216 122 0 0 chrX 134738164 134738205 -27861725 + (TC)n Simple_repeat Simple_repeat 2 42 0 405 0 0 0 chrX 134738205 134738250 -27861680 + (CA)n Simple_repeat Simple_repeat 1 45 0 2031 121 24 0 chrX 134739162 134739452 -27860478 + AluSx SINE Alu 1 297 -15 444 270 48 8 chrX 134739653 134739779 -27860151 - MIR SINE MIR -6 256 126 2100 125 0 0 chrX 134739864 134740190 -27859740 - AluSx SINE Alu 0 326 1 463 187 178 9 chrX 134740274 134740381 -27859549 - L2 LINE L2 0 3313 3189 531 264 88 7 chrX 134740543 134740691 -27859239 + MIR3 SINE MIR 42 201 -7 354 259 76 30 chrX 134740712 134740843 -27859087 - L2 LINE L2 0 3313 3177 519 269 115 21 chrX 134740875 134741109 -27858821 + MIR SINE MIR 1 256 -6 306 182 0 0 chrX 134742248 134742314 -27857616 + GA-rich Low_complexity Low_complexity 3 68 0 2115 94 0 105 chrX 134743681 134744023 -27855907 + AluSg SINE Alu 1 306 -4 2217 61 0 58 chrX 134744166 134744461 -27855469 + AluY SINE Alu 2 279 -32 213 65 0 0 chrX 134744469 134744500 -27855430 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 353 123 15 0 chrX 134744572 134744637 -27855293 + (TG)n Simple_repeat Simple_repeat 1 66 0 1480 181 54 4 chrX 134744637 134745011 -27854919 - L1MB5 LINE L1 -9 6165 5755 861 174 8 0 chrX 134745515 134745647 -27854283 + FLAM_A SINE Alu 1 133 0 22 0 0 0 chrX 134745816 134745838 -27854092 + AT_rich Low_complexity Low_complexity 1 22 0 803 127 0 0 chrX 134746302 134746420 -27853510 - L1PB3 LINE L1 -2 6152 6035 180 0 0 0 chrX 134746666 134746686 -27853244 + (TTG)n Simple_repeat Simple_repeat 2 21 0 262 314 33 39 chrX 134748108 134748261 -27851669 + MARNA DNA Mariner 47 198 -388 403 249 87 75 chrX 134748380 134748421 -27851509 + MIR SINE MIR 10 49 -213 2421 93 0 0 chrX 134748421 134748722 -27851208 - AluSx SINE Alu -11 301 1 403 249 87 75 chrX 134748722 134748853 -27851077 + MIR SINE MIR 49 184 -78 482 286 20 65 chrX 134748976 134749179 -27850751 - MARNA DNA Mariner -231 355 163 787 192 0 0 chrX 134749179 134749304 -27850626 - FLAM_A SINE Alu -8 125 1 482 286 20 65 chrX 134749304 134749345 -27850585 - MARNA DNA Mariner -423 163 122 592 270 129 9 chrX 134750046 134750279 -27849651 + MIR SINE MIR 2 262 0 1914 151 0 3 chrX 134751451 134751760 -27848170 + AluJb SINE Alu 1 308 0 223 291 101 0 chrX 134751773 134751852 -27848078 + L2 LINE L2 3178 3264 -8 252 333 73 24 chrX 134751925 134752048 -27847882 + MIR SINE MIR 84 212 -50 620 191 19 0 chrX 134752793 134752898 -27847032 - MER81 DNA DNA -4 110 4 464 242 206 14 chrX 134753159 134753378 -27846552 - MIR SINE MIR 0 262 2 519 323 38 13 chrX 134753844 134754002 -27845928 + MIR3 SINE MIR 44 205 -3 242 271 59 12 chrX 134755839 134755924 -27844006 - L2 LINE L2 -9 3304 3216 1892 137 10 20 chrX 134757163 134757463 -27842467 - AluJo SINE Alu -14 298 2 619 259 72 64 chrX 134757541 134757792 -27842138 - MIR SINE MIR 0 262 10 398 259 22 0 chrX 134758042 134758134 -27841796 + MIR3 SINE MIR 99 193 -15 2327 84 3 0 chrX 134758169 134758456 -27841474 + AluSg1 SINE Alu 1 288 -21 2468 46 0 0 chrX 134758457 134758761 -27841169 + AluY SINE Alu 1 304 0 1890 51 90 0 chrX 134759495 134759729 -27840201 + L1PA6 LINE L1 5899 6153 -1 319 302 0 0 chrX 134761120 134761206 -27838724 + MIR3 SINE MIR 109 194 -14 557 228 81 100 chrX 134762555 134762814 -27837116 + MIR SINE MIR 8 261 -1 2215 73 0 21 chrX 134763200 134763512 -27836418 + AluY SINE Alu 1 306 0 1636 180 0 24 chrX 134763550 134763839 -27836091 - AluJb SINE Alu -30 282 1 1151 198 32 0 chrX 134764112 134764359 -27835571 + L1MA9 LINE L1 6058 6312 0 21 0 0 0 chrX 134764433 134764454 -27835476 + AT_rich Low_complexity Low_complexity 1 21 0 348 256 69 31 chrX 134766237 134766397 -27833533 + L1ME4a LINE L1 5634 5799 -2009 689 121 247 30 chrX 134766445 134766611 -27833319 - AluJb SINE Alu -7 305 104 1109 199 38 0 chrX 134767856 134768067 -27831863 + AluJo SINE Alu 2 220 -92 317 26 0 0 chrX 134768067 134768105 -27831825 + AluSq/x SINE Alu 86 123 -180 1014 72 0 8 chrX 134768105 134768230 -27831700 - AluJb SINE Alu -167 145 22 396 268 101 13 chrX 134768247 134768475 -27831455 + L1ME4a LINE L1 5869 6116 -5 205 138 0 0 chrX 134769089 134769118 -27830812 + (GGA)n Simple_repeat Simple_repeat 1 29 0 353 218 13 26 chrX 134769269 134769347 -27830583 + L2 LINE L2 3183 3259 -54 26 0 0 0 chrX 134769685 134769711 -27830219 + AT_rich Low_complexity Low_complexity 1 26 0 815 98 8 0 chrX 134769723 134769846 -27830084 + (GA)n Simple_repeat Simple_repeat 1 124 0 1890 169 0 0 chrX 134770219 134770520 -27829410 - AluJo SINE Alu -11 301 1 721 289 109 5 chrX 134770539 134770850 -27829080 - L1ME LINE L1 -298 5823 5485 377 328 55 0 chrX 134772123 134772251 -27827679 + MIR SINE MIR 9 143 -119 225 160 20 20 chrX 134772272 134772322 -27827608 + (TA)n Simple_repeat Simple_repeat 1 50 0 282 95 0 0 chrX 134772893 134772935 -27826995 + (ATG)n Simple_repeat Simple_repeat 1 42 0 342 0 0 0 chrX 134773470 134773508 -27826422 + (TC)n Simple_repeat Simple_repeat 2 39 0 364 267 78 9 chrX 134774339 134774455 -27825475 + L3b LINE CR1 1456 1579 -4 314 293 93 25 chrX 134774853 134775043 -27824887 - MIR SINE MIR -50 212 20 474 33 0 0 chrX 134775878 134775938 -27823992 + (TG)n Simple_repeat Simple_repeat 1 60 0 2542 74 0 0 chrX 134776668 134776977 -27822953 - AluSx SINE Alu -3 309 1 232 325 51 17 chrX 134777141 134777258 -27822672 + L2 LINE L2 3191 3311 -2 441 271 37 0 chrX 134777382 134777489 -27822441 - MIR3 SINE MIR -44 164 54 1423 367 63 23 chrX 134779128 134779939 -27819991 + L3 LINE CR1 46 888 -689 748 42 0 0 chrX 134780140 134780235 -27819695 + AluY SINE Alu 217 311 0 435 345 35 25 chrX 134780417 134780614 -27819316 + MIR SINE MIR 20 218 -44 239 255 108 10 chrX 134780678 134780780 -27819150 + MIR SINE MIR 85 196 -66 360 59 0 0 chrX 134780917 134780968 -27818962 + (TG)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chrX 134782111 134782138 -27817792 + (CA)n Simple_repeat Simple_repeat 2 28 0 395 324 82 73 chrX 134782288 134782928 -27817002 - L2 LINE L2 0 3272 2627 1536 124 0 21 chrX 134783011 134783245 -27816685 + MER30 DNA MER1_type 2 230 0 360 347 0 0 chrX 134784088 134784183 -27815747 + L2 LINE L2 3219 3313 0 225 255 0 0 chrX 134784224 134784275 -27815655 + MLT1-int LTR MaLR 1308 1358 -13 219 366 0 0 chrX 134785235 134785306 -27814624 - L2 LINE L2 -49 3223 3153 2247 135 0 0 chrX 134786326 134786638 -27813292 + AluSx SINE Alu 1 312 0 321 199 253 34 chrX 134786734 134786880 -27813050 + L1ME4a LINE L1 5942 6119 -2 225 184 105 26 chrX 134786975 134787051 -27812879 - MIR SINE MIR -98 164 83 702 251 121 26 chrX 134787171 134787281 -27812649 + L1ME4a LINE L1 5623 5721 -400 2404 85 0 0 chrX 134787281 134787588 -27812342 + AluSg SINE Alu 1 307 -3 702 251 121 26 chrX 134787588 134787931 -27811999 + L1ME4a LINE L1 5721 6119 -2 2647 64 0 0 chrX 134788571 134788917 -27811013 - AluSp SINE Alu 0 346 1 222 301 11 21 chrX 134789820 134789913 -27810017 + CT-rich Low_complexity Low_complexity 1 92 0 2305 88 7 0 chrX 134789919 134790213 -27809717 - AluSx SINE Alu -16 296 1 504 324 103 86 chrX 134791963 134792371 -27807559 - L2 LINE L2 -39 3233 2819 1741 60 13 30 chrX 134792451 134792685 -27807245 - MER30 DNA MER1_type 0 230 1 1902 149 3 0 chrX 134793464 134793753 -27806177 + AluJb SINE Alu 1 290 -22 909 79 0 0 chrX 134793965 134794079 -27805851 - AluSx SINE Alu -5 305 192 1117 81 0 0 chrX 134794080 134794216 -27805714 - AluSx SINE Alu -171 141 6 2275 116 0 0 chrX 134794720 134795022 -27804908 - AluSx SINE Alu -10 302 1 434 316 31 31 chrX 134795570 134795763 -27804167 - MIR SINE MIR -56 206 14 3589 209 14 12 chrX 134796545 134797388 -27802542 - L1MB8 LINE L1 -1 6177 5333 457 292 108 16 chrX 134797677 134797862 -27802068 - MIR SINE MIR -50 212 11 201 132 0 0 chrX 134798510 134798548 -27801382 + (CA)n Simple_repeat Simple_repeat 1 38 0 225 136 45 0 chrX 134798817 134798861 -27801069 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 257 186 103 10 chrX 134798870 134798967 -27800963 - L1ME4a LINE L1 -17 6104 5999 1953 158 0 0 chrX 134799011 134799296 -27800634 + AluSx SINE Alu 5 289 -23 4490 125 16 29 chrX 134799507 134800307 -27799623 + L1MB2 LINE L1 5377 6166 -5 614 205 45 13 chrX 134800322 134800478 -27799452 + MER103 DNA DNA 2 162 -4 2429 94 3 0 chrX 134801325 134801634 -27798296 - AluSp SINE Alu -3 310 1 651 236 97 31 chrX 134801699 134801713 -27798217 - MIR3 SINE MIR 0 208 196 2200 111 0 0 chrX 134801713 134802024 -27797906 + AluSg SINE Alu 1 310 0 651 236 97 31 chrX 134802024 134802204 -27797726 - MIR3 SINE MIR -12 196 1 2357 94 0 0 chrX 134802736 134803033 -27796897 - AluSx SINE Alu -15 297 1 39083 64 6 5 chrX 134804086 134810227 -27789703 - L1PA5 LINE L1 -7 6147 1 2986 129 46 17 chrX 134810314 134810911 -27789019 - MER4B LTR ERV1 0 779 1 2287 113 0 0 chrX 134811166 134811467 -27788463 - AluY SINE Alu -9 302 2 4195 157 75 15 chrX 134811574 134812673 -27787257 - L1MB5 LINE L1 0 6410 5246 1241 123 0 0 chrX 134812687 134812858 -27787072 - AluSg/x SINE Alu -11 299 129 528 207 9 0 chrX 134812861 134812977 -27786953 - L1MB5 LINE L1 -1141 5241 5125 879 120 0 8 chrX 134813483 134813608 -27786322 + FLAM_C SINE Alu 1 124 -19 482 244 92 88 chrX 134813818 134814068 -27785862 - MIR SINE MIR -1 261 11 25 31 0 0 chrX 134814320 134814352 -27785578 + AT_rich Low_complexity Low_complexity 1 32 0 4900 231 50 40 chrX 134814352 134814409 -27785521 - L1MB5 LINE L1 -1242 5140 5085 2529 57 0 3 chrX 134814409 134814709 -27785221 + AluY SINE Alu 1 299 -12 4900 231 50 40 chrX 134814709 134815642 -27784288 - L1MB5 LINE L1 -1297 5085 4120 2286 61 7 0 chrX 134815642 134815939 -27783991 - L1PA7 LINE L1 -1 6153 5855 4900 231 50 40 chrX 134815939 134816708 -27783222 - L1MB5 LINE L1 -2262 4120 3361 3078 225 34 27 chrX 134816706 134817694 -27782236 - L1MB5 LINE L1 -4559 1825 831 * 289 229 31 94 chrX 134817826 134817922 -27782008 - MIR SINE MIR -56 206 117 243 266 202 32 chrX 134818600 134818724 -27781206 - MIR SINE MIR -8 254 110 213 139 23 0 chrX 134820156 134820199 -27779731 + C-rich Low_complexity Low_complexity 4 47 0 196 257 107 93 chrX 134823424 134823564 -27776366 + MIR3 SINE MIR 3 144 -64 911 121 0 21 chrX 134823844 134823984 -27775946 + FLAM_C SINE Alu 6 142 -1 328 190 0 0 chrX 134824030 134824088 -27775842 - L2 LINE L2 0 3272 3215 265 252 24 71 chrX 134824207 134824334 -27775596 + MIR SINE MIR 92 212 -50 702 245 48 89 chrX 134824515 134824683 -27775247 - MIR SINE MIR -1 261 107 2003 146 3 10 chrX 134824683 134824984 -27774946 + AluJo SINE Alu 1 299 -13 702 245 48 89 chrX 134824984 134825084 -27774846 - MIR SINE MIR -155 107 4 234 191 0 0 chrX 134825793 134825835 -27774095 - MIR SINE MIR -36 226 185 308 242 15 0 chrX 134825839 134825905 -27774025 - L2 LINE L2 -1 3271 3205 889 224 15 30 chrX 134826023 134826224 -27773706 - MIR SINE MIR -63 199 2 240 311 90 48 chrX 134827219 134827386 -27772544 + MIR SINE MIR 65 238 -24 827 117 0 0 chrX 134828057 134828168 -27771762 + FLAM_A SINE Alu 13 123 -19 275 272 0 49 chrX 134828169 134828250 -27771680 + MER5A DNA MER1_type 63 139 -50 1391 99 36 0 chrX 134828576 134828796 -27771134 - L1MA5 LINE L1 0 6300 6073 1604 141 61 0 chrX 134828796 134829058 -27770872 - MER1B DNA MER1_type 0 339 62 3459 104 31 6 chrX 134829064 134829610 -27770320 - L1MA5 LINE L1 -218 6082 5523 439 214 129 39 chrX 134829686 134829864 -27770066 + L1ME LINE L1 5605 5798 -323 586 305 45 17 chrX 134829891 134830068 -27769862 - MIR SINE MIR -59 203 22 341 300 83 25 chrX 134831211 134831331 -27768599 - L2 LINE L2 -5 3267 3141 4982 194 55 25 chrX 134831802 134833018 -27766912 + Charlie1a DNA MER1_type 2 1253 -202 1258 164 0 46 chrX 134833030 134833249 -27766681 + AluJb SINE Alu 87 295 -17 636 167 61 91 chrX 134833251 134833449 -27766481 + Charlie1a DNA MER1_type 1263 1454 -1 207 0 0 0 chrX 134833603 134833626 -27766304 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 659 81 0 0 chrX 134835309 134835408 -27764522 + L1PA13 LINE L1 6063 6161 -2 1594 165 59 0 chrX 134835596 134835869 -27764061 + AluJb SINE Alu 5 293 -19 220 310 159 26 chrX 134836007 134836120 -27763810 - MIR SINE MIR -61 147 20 920 199 0 0 chrX 134836333 134836494 -27763436 - FRAM SINE Alu -15 161 1 2711 135 26 9 chrX 134836521 134836987 -27762943 - L1MB1 LINE L1 0 6168 5695 2265 119 0 3 chrX 134837282 134837594 -27762336 - AluSq SINE Alu -2 311 1 225 352 25 43 chrX 134837843 134838005 -27761925 + L2 LINE L2 2772 2930 -384 2259 81 6 31 chrX 134838044 134838364 -27761566 - AluSx SINE Alu 0 312 1 489 348 61 30 chrX 134838457 134838687 -27761243 + MIR SINE MIR 20 256 -6 818 285 16 52 chrX 134838888 134839033 -27760897 - MIR SINE MIR -6 256 122 1861 45 4 28 chrX 134839033 134839280 -27760650 + L1PA5 LINE L1 5912 6152 -2 818 285 16 52 chrX 134839280 134839383 -27760547 - MIR SINE MIR -140 122 17 265 316 44 35 chrX 134839681 134839795 -27760135 - L3 LINE CR1 -1114 463 349 325 339 53 12 chrX 134840342 134840513 -27759417 + MIR3 SINE MIR 22 199 -9 348 80 0 0 chrX 134840756 134840806 -27759124 - MADE1 DNA Mariner -30 50 1 900 164 73 173 chrX 134841070 134841510 -27758420 - MSTD LTR MaLR 0 396 1 1931 133 103 3 chrX 134841615 134841761 -27758169 - THE1B LTR MaLR 0 364 234 2045 95 4 0 chrX 134841761 134842025 -27757905 + AluSp SINE Alu 31 295 -18 1931 133 103 3 chrX 134842025 134842209 -27757721 - THE1B LTR MaLR -130 234 1 207 0 0 0 chrX 134842667 134842690 -27757240 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 209 57 29 0 chrX 134842996 134843031 -27756899 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 317 143 36 0 chrX 134843385 134843441 -27756489 + Tigger7 DNA MER2_type 2429 2486 -1 296 228 13 0 chrX 134843505 134843584 -27756346 + L1MDb LINE L1 1035 1114 -5429 2468 93 0 0 chrX 134843587 134843899 -27756031 + AluSx SINE Alu 1 312 0 729 245 82 59 chrX 134843913 134844440 -27755490 + L1MDb LINE L1 1750 2300 -4240 1892 121 38 17 chrX 134844440 134844729 -27755201 + AluSx SINE Alu 3 297 -15 729 245 82 59 chrX 134844729 134844945 -27754985 + L1MDb LINE L1 2300 2510 -4030 1050 43 0 0 chrX 134845045 134845184 -27754746 - L1P LINE L1 -3528 2618 2480 269 286 143 18 chrX 134845289 134845401 -27754529 - MIR SINE MIR -105 157 32 2022 139 3 35 chrX 134845533 134845850 -27754080 - AluSq SINE Alu -6 307 1 2391 100 0 0 chrX 134845865 134846175 -27753755 - AluSx SINE Alu -2 310 1 3873 120 3 8 chrX 134849215 134849806 -27750124 - THE1C-int LTR MaLR -18 1562 975 2466 106 18 20 chrX 134849817 134850215 -27749715 - THE1C-int LTR MaLR -1183 397 1 2224 141 19 19 chrX 134850215 134850590 -27749340 - THE1C LTR MaLR 0 375 1 23 0 0 0 chrX 134850834 134850857 -27749073 + AT_rich Low_complexity Low_complexity 1 23 0 4530 102 54 20 chrX 134851037 134851054 -27748876 + MER4E LTR ERV1 1 16 -763 2243 85 13 7 chrX 134851054 134851361 -27748569 - AluY SINE Alu -2 309 1 4530 102 54 20 chrX 134851361 134852087 -27747843 + MER4E LTR ERV1 16 769 -10 213 39 0 0 chrX 134852110 134852136 -27747794 + (T)n Simple_repeat Simple_repeat 1 26 0 1030 93 33 7 chrX 134852239 134852389 -27747541 + L1PA10 LINE L1 6014 6167 -1 2068 270 74 30 chrX 134852410 134853833 -27746097 + L1M1 LINE L1 2283 3782 -3783 24 0 0 0 chrX 134853948 134853972 -27745958 + AT_rich Low_complexity Low_complexity 1 24 0 2733 158 11 2 chrX 134853972 134854440 -27745490 - L1PA16 LINE L1 -9 6157 5686 249 293 40 0 chrX 134856482 134856557 -27743373 - L2 LINE L2 -13 3300 3223 2396 114 6 3 chrX 134856896 134857247 -27742683 - THE1B LTR MaLR -12 352 1 287 285 11 38 chrX 134857883 134857922 -27742008 - L1ME4a LINE L1 -235 5886 5847 1236 207 71 71 chrX 134857922 134858318 -27741612 + MSTD LTR MaLR 1 396 0 287 285 11 38 chrX 134858318 134858464 -27741466 - L1ME4a LINE L1 -274 5847 5706 21 0 0 0 chrX 134861009 134861030 -27738900 + AT_rich Low_complexity Low_complexity 1 21 0 2288 107 0 0 chrX 134861159 134861467 -27738463 - AluSg SINE Alu 0 310 3 2285 92 11 20 chrX 134861561 134861918 -27738012 - L1MA1 LINE L1 0 6302 5949 21 0 0 0 chrX 134862677 134862698 -27737232 + AT_rich Low_complexity Low_complexity 1 21 0 238 302 244 5 chrX 134862936 134863141 -27736789 + MER102a DNA MER1_type 76 329 -1 1337 260 0 0 chrX 134863431 134863716 -27736214 + Tigger7 DNA MER2_type 1 285 -448 25 0 0 0 chrX 134864070 134864095 -27735835 + AT_rich Low_complexity Low_complexity 1 25 0 285 167 0 37 chrX 134864639 134864693 -27735237 + L2 LINE L2 3262 3313 0 359 225 207 9 chrX 134865178 134865289 -27734641 + L2 LINE L2 3140 3272 0 706 126 0 27 chrX 134865632 134865743 -27734187 + AluJo SINE Alu 121 228 -84 21 36 0 0 chrX 134865750 134865778 -27734152 + AT_rich Low_complexity Low_complexity 1 28 0 2232 116 10 0 chrX 134866313 134866616 -27733314 + AluSg SINE Alu 1 306 -4 2257 105 3 16 chrX 134866628 134866934 -27732996 + AluSp SINE Alu 1 302 -11 2356 98 0 0 chrX 134867457 134867763 -27732167 + AluSc SINE Alu 1 306 -3 323 351 74 10 chrX 134868403 134868639 -27731291 - L2 LINE L2 -249 3023 2765 344 245 26 45 chrX 134868642 134868797 -27731133 - MER117 DNA MER1_type 0 197 46 1791 144 41 4 chrX 134868858 134869168 -27730762 - AluJb SINE Alu 0 320 1 257 343 56 7 chrX 134869291 134869434 -27730496 - L2 LINE L2 -780 2534 2385 659 253 13 0 chrX 134869455 134869609 -27730321 - MIR SINE MIR 0 262 107 534 271 28 64 chrX 134870882 134871035 -27728895 - MIR SINE MIR -48 214 69 2036 127 14 0 chrX 134871035 134871348 -27728582 + AluSx SINE Alu 1 317 0 534 271 28 64 chrX 134871348 134871411 -27728519 - MIR SINE MIR -193 69 5 356 188 16 0 chrX 134872196 134872260 -27727670 + U4 snRNA snRNA 3 67 -78 597 267 54 79 chrX 134872286 134872526 -27727404 - MIR SINE MIR -4 258 25 2291 175 15 11 chrX 134873222 134873696 -27726234 - L1MB8 LINE L1 0 6178 5703 238 204 0 0 chrX 134873739 134873793 -27726137 + L1M4 LINE L1 5703 5756 -422 * 5993 212 62 17 chrX 134873792 134875548 -27724382 - L1MB8 LINE L1 -1641 4505 2671 1333 56 0 0 chrX 134876048 134876209 -27723721 + AluY SINE Alu 136 296 -15 2313 101 3 0 chrX 134877075 134877382 -27722548 + AluSp SINE Alu 2 309 -4 2393 78 0 0 chrX 134877384 134877678 -27722252 + AluY SINE Alu 1 294 -17 1902 142 3 7 chrX 134878395 134878690 -27721240 - AluJb SINE Alu -18 294 1 427 277 73 15 chrX 134879022 134879159 -27720771 + MIR SINE MIR 69 213 -49 339 296 52 17 chrX 134879166 134879281 -27720649 + L2 LINE L2 3150 3268 -4 386 312 144 9 chrX 134881519 134881743 -27718187 - MIR SINE MIR -6 256 11 250 290 60 30 chrX 134882054 134882154 -27717776 - L2 LINE L2 -1 3271 3169 336 283 289 7 chrX 134882830 134882982 -27716948 - MIR SINE MIR -11 251 57 662 153 105 8 chrX 134884217 134884341 -27715589 + FRAM SINE Alu 25 160 -16 224 292 99 31 chrX 134884589 134884750 -27715180 - MIR SINE MIR -59 203 32 2028 155 0 0 chrX 134884922 134885226 -27714704 - AluSx SINE Alu -8 304 1 411 118 0 0 chrX 134886742 134886810 -27713120 - L1MA7 LINE L1 0 6291 6224 2240 115 0 0 chrX 134886823 134887118 -27712812 - AluSx SINE Alu -17 295 1 267 116 14 29 chrX 134887617 134887686 -27712244 + (GA)n Simple_repeat Simple_repeat 2 69 0 220 342 58 25 chrX 134888094 134888214 -27711716 + L2 LINE L2 3138 3261 -11 599 153 0 0 chrX 134888391 134888503 -27711427 + AluSg/x SINE Alu 203 314 0 2253 78 3 7 chrX 134888624 134888964 -27710966 - AluSg1 SINE Alu 0 339 1 201 39 0 0 chrX 134890087 134890113 -27709817 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 2600 58 0 3 chrX 134890253 134890563 -27709367 - AluY SINE Alu -2 309 1 1344 25 0 12 chrX 134890641 134890802 -27709128 - L1PA5 LINE L1 -3 6151 5993 551 298 30 5 chrX 134890999 134891197 -27708733 + L1MC4a LINE L1 5663 5865 -1943 597 288 106 70 chrX 134891419 134891724 -27708206 - L2 LINE L2 -674 2640 2347 2336 115 0 0 chrX 134891724 134892029 -27707901 - AluSx SINE Alu -7 305 1 597 288 106 70 chrX 134892029 134892362 -27707568 - L2 LINE L2 -967 2347 1979 978 173 12 0 chrX 134892362 134892524 -27707406 + FRAM SINE Alu 1 164 -12 483 204 0 0 chrX 134892524 134892612 -27707318 + AluJb SINE Alu 135 222 -90 3256 99 61 61 chrX 134892624 134893179 -27706751 - LTR10A LTR ERV1 -54 555 1 598 108 0 0 chrX 134893179 134893262 -27706668 + AluJb SINE Alu 219 301 -11 2343 100 0 0 chrX 134893264 134893553 -27706377 + AluSc SINE Alu 2 290 -19 195 42 0 0 chrX 134893553 134893577 -27706353 + (GA)n Simple_repeat Simple_repeat 2 25 0 509 204 16 99 chrX 134893638 134893829 -27706101 + L1MB8 LINE L1 6003 6177 -1 466 307 25 20 chrX 134895324 134895526 -27704404 - L3 LINE CR1 -1 1576 1374 214 213 50 50 chrX 134897169 134897249 -27702681 - L2 LINE L2 -189 3083 3004 2327 104 3 0 chrX 134897260 134897569 -27702361 + AluSq SINE Alu 1 310 -3 617 232 16 0 chrX 134897632 134897955 -27701975 + GA-rich Low_complexity Low_complexity 1 328 0 278 414 10 24 chrX 134897955 134898252 -27701678 - L2 LINE L2 -338 2976 2684 2306 112 48 25 chrX 134898554 134898910 -27701020 - THE1B LTR MaLR 0 364 1 219 36 0 0 chrX 134899137 134899165 -27700765 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1678 164 36 0 chrX 134899616 134899927 -27700003 + AluJb SINE Alu 3 323 0 240 186 0 17 chrX 134900230 134900289 -27699641 - L1MB3 LINE L1 0 6183 6126 333 193 36 0 chrX 134900289 134900372 -27699558 - L1MB4 LINE L1 0 6180 6095 3368 113 32 0 chrX 134900389 134900883 -27699047 - L1MA4 LINE L1 -283 6017 5508 1446 167 26 0 chrX 134900886 134901155 -27698775 - L1MB5 LINE L1 -38 6136 5861 975 211 9 7 chrX 134901570 134901812 -27698118 - L1MB5 LINE L1 -313 5861 5659 884 154 84 0 chrX 134902054 134902197 -27697733 - FAM SINE Alu -19 166 12 215 294 82 37 chrX 134902204 134902449 -27697481 + L2 LINE L2 1847 2102 -1212 1717 150 29 21 chrX 134902744 134903024 -27696906 + AluJo SINE Alu 1 282 -30 1818 183 0 3 chrX 134903326 134903627 -27696303 - AluJb SINE Alu -12 300 1 1960 142 7 0 chrX 134904156 134904444 -27695486 + AluSx SINE Alu 1 290 -22 645 273 0 12 chrX 134905582 134905754 -27694176 - MIR3 SINE MIR -6 202 33 263 114 0 0 chrX 134905761 134905796 -27694134 + AluJ/FLAM SINE Alu 57 91 -211 284 281 61 113 chrX 134906412 134906618 -27693312 + L2 LINE L2 2656 2840 -474 369 0 0 0 chrX 134906618 134906659 -27693271 + (CA)n Simple_repeat Simple_repeat 1 41 0 284 281 61 113 chrX 134906659 134906779 -27693151 + L2 LINE L2 2840 2965 -349 3942 79 4 0 chrX 134906867 134907386 -27692544 - L1PB2 LINE L1 -2 6149 5629 625 283 44 22 chrX 134908283 134908509 -27691421 + MIR SINE MIR 32 262 0 978 154 0 53 chrX 134908554 134908723 -27691207 + AluJ SINE Alu 1 160 -152 802 163 0 0 chrX 134908768 134908921 -27691009 + AluJ SINE Alu 163 315 0 269 289 144 15 chrX 134909692 134909963 -27689967 + L1ME LINE L1 5265 5570 -551 206 219 0 0 chrX 134911747 134911788 -27688142 + CT-rich Low_complexity Low_complexity 2 42 0 400 270 27 9 chrX 134912420 134912531 -27687399 - L2 LINE L2 0 3313 3201 2280 104 0 7 chrX 134912616 134912913 -27687017 + AluSx SINE Alu 2 296 -16 203 204 23 0 chrX 134913862 134913906 -27686024 + MIR SINE MIR 102 146 -62 1654 169 15 4 chrX 134914431 134914698 -27685232 - AluSx SINE Alu -15 297 28 270 86 0 0 chrX 134914751 134914786 -27685144 - AluSx SINE Alu -267 35 1 297 286 25 34 chrX 134914996 134915115 -27684815 - L3 LINE CR1 -91 1486 1369 1451 60 0 0 chrX 134915259 134915427 -27684503 + AluY SINE Alu 127 294 -17 353 80 0 0 chrX 134915577 134915627 -27684303 - L1PA8 LINE L1 -3 6169 6120 201 270 16 0 chrX 134915656 134915719 -27684211 - L3 LINE CR1 -200 1377 1314 725 115 29 0 chrX 134915748 134915852 -27684078 + U6 snRNA snRNA 1 107 0 2135 133 3 0 chrX 134915852 134916167 -27683763 + L1PB4 LINE L1 5841 6156 0 344 292 23 53 chrX 134916417 134916588 -27683342 - L3 LINE CR1 -573 1004 839 441 0 0 0 chrX 134916645 134916694 -27683236 + (TG)n Simple_repeat Simple_repeat 2 50 0 1383 254 25 37 chrX 134916721 134917126 -27682804 + MARNA DNA Mariner 137 536 -50 1016 112 8 0 chrX 134917238 134917372 -27682558 + AluSq/x SINE Alu 1 135 -178 2094 133 0 3 chrX 134917372 134917681 -27682249 + AluSx SINE Alu 1 308 -4 267 326 10 0 chrX 134917834 134917932 -27681998 + L1ME LINE L1 5785 5883 -287 1970 132 7 17 chrX 134918001 134918296 -27681634 + AluSx SINE Alu 1 292 -20 251 258 0 21 chrX 134918298 134918391 -27681539 + L1MC4 LINE L1 6613 6703 -1339 232 258 0 22 chrX 134918374 134918463 -27681467 - L1MC4 LINE L1 -1342 6700 6614 * 273 278 0 0 chrX 134918423 134918513 -27681417 + L1MC4 LINE L1 6614 6703 -1339 319 235 47 0 chrX 134918514 134918599 -27681331 + L1MC4 LINE L1 6615 6703 -1339 233 119 0 0 chrX 134918601 134918643 -27681287 - LTR66 LTR ERVL -171 439 398 241 247 74 0 chrX 134918644 134918725 -27681205 + L1MC4 LINE L1 6615 6701 -1341 241 205 77 0 chrX 134918728 134918806 -27681124 + L1MC4 LINE L1 6615 6698 -1344 244 132 0 0 chrX 134919124 134919162 -27680768 + L2 LINE L2 3262 3299 -14 465 180 30 10 chrX 134919512 134919612 -27680318 - MIR SINE MIR -55 153 52 2016 146 7 0 chrX 134920514 134920809 -27679121 - AluJb SINE Alu -15 297 1 845 166 83 0 chrX 134921621 134921788 -27678142 - AluJb SINE Alu 0 312 140 998 199 0 0 chrX 134921885 134922051 -27677879 + FRAM SINE Alu 1 166 0 2136 122 6 10 chrX 134922603 134922915 -27677015 - AluSx SINE Alu -1 311 1 1052 67 15 8 chrX 134922915 134923049 -27676881 - AluSq/x SINE Alu -178 135 1 1518 167 38 28 chrX 134923049 134923336 -27676594 - AluJo SINE Alu -22 290 1 186 43 0 0 chrX 134924716 134924739 -27675191 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1837 133 50 17 chrX 134924742 134925044 -27674886 - AluJb SINE Alu 0 312 1 1692 122 4 53 chrX 134926351 134926613 -27673317 + AluSx SINE Alu 48 296 -16 201 154 0 0 chrX 134926771 134926810 -27673120 + T-rich Low_complexity Low_complexity 1 39 0 1429 232 67 85 chrX 134926882 134927079 -27672851 + MLT1F1 LTR MaLR 1 200 -367 1841 152 0 23 chrX 134927079 134927407 -27672523 + AluSx SINE Alu 1 312 0 1429 232 67 85 chrX 134927407 134927776 -27672154 + MLT1F1 LTR MaLR 200 561 -6 204 40 0 0 chrX 134927777 134927802 -27672128 + (CA)n Simple_repeat Simple_repeat 2 26 0 1189 182 56 44 chrX 134927893 134927974 -27671956 - MER33 DNA MER1_type -2261 324 245 1748 167 3 33 chrX 134927974 134928279 -27671651 + AluJb SINE Alu 14 309 -3 1189 182 56 44 chrX 134928279 134928412 -27671518 - MER33 DNA MER1_type -2340 245 102 2418 103 3 0 chrX 134928412 134928724 -27671206 - AluSp SINE Alu 0 313 1 1189 182 56 44 chrX 134928724 134928827 -27671103 - MER33 DNA MER1_type -2483 102 2 3549 201 15 18 chrX 134928962 134929786 -27670144 + L1MB4 LINE L1 4546 5366 -780 216 213 21 0 chrX 134929786 134929833 -27670097 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 2830 160 23 8 chrX 134929834 134930347 -27669583 + L1MB4 LINE L1 5360 5880 -300 1006 133 0 6 chrX 134930347 134930511 -27669419 + L1MA5 LINE L1 6136 6300 0 1535 182 16 16 chrX 134930528 134930846 -27669084 + L1MB4 LINE L1 5857 6174 -6 453 106 0 0 chrX 134930877 134930943 -27668987 + L1MB8 LINE L1 6103 6168 -10 303 182 208 0 chrX 134930955 134931032 -27668898 + L1M4 LINE L1 5638 5730 -448 296 108 0 0 chrX 134931032 134931104 -27668826 + Alu SINE Alu 244 315 0 1929 213 73 19 chrX 134932186 134932665 -27667265 + MLT1D LTR MaLR 1 505 0 687 201 45 89 chrX 134933074 134933182 -27666748 + MER5B DNA MER1_type 8 107 -71 1903 127 3 0 chrX 134933182 134933507 -27666423 - AluSq SINE Alu 0 326 1 687 201 45 89 chrX 134933507 134933576 -27666354 + MER5B DNA MER1_type 107 178 0 252 122 0 0 chrX 134936457 134936498 -27663432 + (TC)n Simple_repeat Simple_repeat 2 42 0 254 29 29 0 chrX 134936545 134936580 -27663350 + (CAGG)n Simple_repeat Simple_repeat 1 36 0 790 249 59 18 chrX 134936615 134936855 -27663075 + MIR SINE MIR 5 250 -12 317 286 25 61 chrX 134936891 134937087 -27662843 + L1ME3A LINE L1 5974 6162 -8 784 176 6 6 chrX 134937127 134937303 -27662627 + GA-rich Low_complexity Low_complexity 4 179 0 236 309 208 8 chrX 134937787 134938052 -27661878 + L2 LINE L2 2031 2348 -966 209 291 118 31 chrX 134939187 134939314 -27660616 + L2 LINE L2 2294 2431 -883 4100 167 9 60 chrX 134939363 134939697 -27660233 - L1MB7 LINE L1 -9 6175 5826 2041 119 3 0 chrX 134939697 134939999 -27659931 + AluSx SINE Alu 1 303 -9 4100 167 9 60 chrX 134939999 134940382 -27659548 - L1MB7 LINE L1 -358 5826 5512 1782 170 3 0 chrX 134940382 134940682 -27659248 - AluJb SINE Alu -11 301 1 4100 167 9 60 chrX 134940682 134940853 -27659077 - L1MB7 LINE L1 -672 5512 5334 503 316 142 26 chrX 134940886 134941345 -27658585 + L2 LINE L2 2032 2543 -771 231 300 0 0 chrX 134941515 134941585 -27658345 + L2 LINE L2 2551 2620 -694 274 301 0 0 chrX 134941625 134941698 -27658232 - L2 LINE L2 -676 2638 2566 320 314 68 61 chrX 134941705 134942034 -27657896 + L2 LINE L2 2635 2973 -299 2480 156 50 2 chrX 134942034 134942438 -27657492 + MSTB LTR MaLR 2 424 -2 364 303 46 102 chrX 134942566 134942715 -27657215 - L2 LINE L2 -1 3271 3144 1705 93 119 8 chrX 134942715 134942983 -27656947 + AluSg SINE Alu 3 300 -10 364 303 46 102 chrX 134942983 134943117 -27656813 - L2 LINE L2 -128 3144 3004 458 331 22 22 chrX 134943122 134943300 -27656630 - L2 LINE L2 -906 2408 2231 280 273 0 0 chrX 134943513 134943579 -27656351 + L2 LINE L2 3247 3312 -1 767 153 0 36 chrX 134943601 134943738 -27656192 + FLAM_A SINE Alu 11 142 0 1656 162 0 28 chrX 134943973 134944263 -27655667 + AluJb SINE Alu 1 282 -30 1273 165 142 27 chrX 134944930 134945190 -27654740 + AluJb SINE Alu 1 290 -12 208 330 18 0 chrX 134945238 134945347 -27654583 + GA-rich Low_complexity Low_complexity 1 111 0 562 269 0 7 chrX 134945347 134945488 -27654442 - MIR3 SINE MIR -39 169 30 1495 155 35 51 chrX 134946562 134946692 -27653238 + AluJb SINE Alu 1 132 -180 279 0 0 0 chrX 134946692 134946723 -27653207 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1495 155 35 51 chrX 134946723 134946908 -27653022 + AluJb SINE Alu 132 311 -1 250 278 0 0 chrX 134946955 134947009 -27652921 + L2 LINE L2 3254 3307 -6 * 287 317 144 0 chrX 134947008 134947112 -27652818 - MIR3 SINE MIR -25 183 65 617 284 226 47 chrX 134947224 134947588 -27652342 - L3 LINE CR1 -214 1363 897 1962 135 7 0 chrX 134947588 134947891 -27652039 - AluJb SINE Alu -7 305 1 617 284 226 47 chrX 134947891 134947990 -27651940 - L3 LINE CR1 -680 897 817 1807 167 3 6 chrX 134948192 134948611 -27651319 + AluJb SINE Alu 1 418 0 503 221 248 0 chrX 134948652 134948801 -27651129 - MIR SINE MIR -29 233 48 885 178 0 59 chrX 134948841 134949010 -27650920 + MER5B DNA MER1_type 2 160 -18 2059 77 88 0 chrX 134949311 134949596 -27650334 + AluSp SINE Alu 2 311 -2 250 162 44 0 chrX 134950555 134950623 -27649307 + CT-rich Low_complexity Low_complexity 2 72 0 2100 101 7 13 chrX 134950730 134951037 -27648893 - AluSq SINE Alu -8 305 1 383 235 0 9 chrX 134951037 134951152 -27648778 + CT-rich Low_complexity Low_complexity 1 114 0 200 163 23 0 chrX 134952313 134952356 -27647574 + A-rich Low_complexity Low_complexity 2 45 0 542 202 0 0 chrX 134952515 134952604 -27647326 + AluJ/FLAM SINE Alu 9 97 -215 * 850 188 13 0 chrX 134952603 134952752 -27647178 + AluJo/FRAM SINE Alu 129 279 -33 534 214 21 0 chrX 134952760 134952905 -27647025 + GA-rich Low_complexity Low_complexity 2 149 0 232 147 0 0 chrX 134952905 134952939 -27646991 + (GGAAA)n Simple_repeat Simple_repeat 2 35 0 199 325 0 36 chrX 134954049 134954132 -27645798 + MIR3 SINE MIR 102 181 -27 657 170 104 66 chrX 134954198 134954410 -27645520 - L1MB8 LINE L1 0 6178 5959 1636 139 39 36 chrX 134954414 134954741 -27645189 - AluJb SINE Alu 0 328 1 1024 147 0 26 chrX 134954741 134954902 -27645028 - L1MB8 LINE L1 -733 5441 5285 1813 81 157 0 chrX 134954902 134955163 -27644767 - AluSx SINE Alu -10 302 1 1024 147 0 26 chrX 134955163 134955233 -27644697 - L1MB8 LINE L1 -889 5285 5215 437 209 18 55 chrX 134955243 134955275 -27644655 - MER58 DNA MER1_type -109 106 74 656 194 0 37 chrX 134955275 134955409 -27644521 + FLAM_A SINE Alu 1 129 -4 437 209 18 55 chrX 134955409 134955486 -27644444 - MER58 DNA MER1_type -141 74 1 4449 179 31 55 chrX 134956575 134956760 -27643170 + L1MB4 LINE L1 4821 5009 -1171 1749 150 0 0 chrX 134956760 134957063 -27642867 + AluJo SINE Alu 13 315 0 4449 179 31 55 chrX 134957063 134957364 -27642566 + L1MB4 LINE L1 5009 5316 -864 1962 133 7 7 chrX 134957364 134957658 -27642272 + AluSx SINE Alu 1 294 -18 4449 179 31 55 chrX 134957658 134958182 -27641748 + L1MB4 LINE L1 5316 5851 -329 1851 126 0 50 chrX 134958182 134958500 -27641430 - AluJb SINE Alu -10 302 1 4449 179 31 55 chrX 134958500 134958556 -27641374 + L1MB4 LINE L1 5851 5907 -273 2202 75 0 0 chrX 134958556 134958874 -27641056 + AluY SINE Alu 1 318 0 4449 179 31 55 chrX 134958874 134959197 -27640733 + L1MB4 LINE L1 5907 6180 0 2113 114 0 3 chrX 134959320 134959626 -27640304 + AluSq SINE Alu 1 305 -8 2010 110 24 0 chrX 134959868 134960158 -27639772 + AluSx SINE Alu 1 297 -15 361 164 0 0 chrX 134960576 134960623 -27639307 + AluJb SINE Alu 1 47 -254 3063 82 0 19 chrX 134960623 134961035 -27638895 + MLT2A1 LTR ERVL 1 404 -40 349 235 0 0 chrX 134961039 134961107 -27638823 + L1MC4 LINE L1 6636 6703 -1339 311 143 36 18 chrX 134961082 134961138 -27638792 + L1MCa LINE L1 1996 2052 -4374 * 337 147 0 12 chrX 134961138 134961160 -27638770 + MLT2A2 LTR ERVL 399 420 -33 1173 113 0 0 chrX 134961160 134961337 -27638593 + (TA)n Simple_repeat Simple_repeat 2 178 0 337 147 0 12 chrX 134961337 134961377 -27638553 + MLT2A2 LTR ERVL 420 453 0 1381 143 15 46 chrX 134961377 134961636 -27638294 + AluJb SINE Alu 43 293 -19 2020 132 0 0 chrX 134962579 134962875 -27637055 + AluSx SINE Alu 1 296 -16 9707 58 6 79 chrX 134962878 134964373 -27635557 + SVA Other Other 1 1386 0 1782 268 42 57 chrX 134965892 134966003 -27633927 + L2 LINE L2 2247 2358 -956 844 158 0 0 chrX 134966003 134966130 -27633800 - FLAM_C SINE Alu -4 129 3 1782 268 42 57 chrX 134966130 134966318 -27633612 + L2 LINE L2 2358 2547 -767 2181 123 0 0 chrX 134966318 134966628 -27633302 - AluSg SINE Alu 0 310 1 1782 268 42 57 chrX 134966628 134966994 -27632936 + L2 LINE L2 2547 2903 -411 1018 152 0 6 chrX 134966994 134967165 -27632765 + AluSg/x SINE Alu 128 297 -15 1012 245 142 22 chrX 134967167 134967526 -27632404 + L2 LINE L2 2910 3311 -2 488 232 0 110 chrX 134967896 134968010 -27631920 + L2 LINE L2 3176 3270 -43 2358 78 0 0 chrX 134968010 134968319 -27631611 + AluY SINE Alu 3 311 0 488 232 0 110 chrX 134968319 134968359 -27631571 + L2 LINE L2 3270 3313 0 266 268 42 0 chrX 134968644 134968715 -27631215 - MIR SINE MIR -18 244 171 404 232 101 89 chrX 134969927 134970095 -27629835 - MIR SINE MIR -91 171 2 2074 110 0 0 chrX 134970836 134971201 -27628729 - AluSx SINE Alu 0 365 1 1664 143 32 4 chrX 134972896 134973175 -27626755 + AluJo SINE Alu 1 287 -25 2037 127 0 0 chrX 134973310 134973664 -27626266 - AluSx SINE Alu 0 354 1 195 129 0 0 chrX 134973822 134973853 -27626077 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 328 295 68 16 chrX 134973902 134974092 -27625838 + L2 LINE L2 1234 1433 -1881 1709 157 30 7 chrX 134974306 134974606 -27625324 - AluSx SINE Alu -5 307 1 419 306 25 118 chrX 134974684 134975203 -27624727 + L2 LINE L2 2230 2700 -614 1066 268 72 62 chrX 134975440 134975890 -27624040 + L1ME3A LINE L1 5451 5912 -258 1440 93 0 10 chrX 134975890 134976094 -27623836 + L1PA14 LINE L1 5958 6159 -2 1066 268 72 62 chrX 134976094 134976351 -27623579 + L1ME3A LINE L1 5912 6165 -5 2074 78 0 82 chrX 134976353 134976672 -27623258 + AluSg SINE Alu 1 293 -17 2281 68 0 23 chrX 134976695 134977004 -27622926 + AluY SINE Alu 1 302 -9 891 120 0 23 chrX 134977044 134977177 -27622753 - FLAM_A SINE Alu 0 133 4 1182 169 143 11 chrX 134977256 134977393 -27622537 - AluJo SINE Alu -1 301 183 1937 148 0 0 chrX 134977393 134977683 -27622247 + AluSx SINE Alu 1 290 -22 1182 169 143 11 chrX 134977683 134977811 -27622119 - AluJo SINE Alu -119 183 1 336 259 130 37 chrX 134977932 134978094 -27621836 + L2 LINE L2 2596 2772 -542 775 138 8 8 chrX 134978206 134978329 -27621601 + FRAM SINE Alu 28 150 -26 254 96 0 19 chrX 134978338 134978390 -27621540 + (TA)n Simple_repeat Simple_repeat 2 52 0 695 112 69 45 chrX 134978410 134978490 -27621440 + L1P4 LINE L1 5320 5397 -769 2126 130 0 0 chrX 134978490 134978798 -27621132 + AluSx SINE Alu 3 310 -2 695 112 69 45 chrX 134978798 134978867 -27621063 + L1P4 LINE L1 5397 5435 -731 516 32 0 0 chrX 134978867 134978929 -27621001 + (TA)n Simple_repeat Simple_repeat 2 63 0 695 112 69 45 chrX 134978929 134978973 -27620957 + L1P4 LINE L1 5435 5476 -690 1668 158 11 4 chrX 134979789 134980062 -27619868 + AluSx SINE Alu 1 275 -37 180 0 0 0 chrX 134980066 134980086 -27619844 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 583 135 62 0 chrX 134980127 134980223 -27619707 + FLAM_A SINE Alu 34 135 -7 5734 127 24 7 chrX 134980223 134980455 -27619475 + L1PA16 LINE L1 4291 4518 -1648 1956 129 0 0 chrX 134980455 134980735 -27619195 + AluSx SINE Alu 1 280 -32 378 17 33 17 chrX 134980735 134980795 -27619135 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 5734 127 24 7 chrX 134980795 134981776 -27618154 + L1PA16 LINE L1 4518 5518 -648 189 0 0 0 chrX 134981776 134981797 -27618133 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5734 127 24 7 chrX 134981797 134982449 -27617481 + L1PA16 LINE L1 5518 6157 -9 315 247 86 11 chrX 134982516 134982609 -27617321 + L1ME4a LINE L1 6021 6120 -1 1785 249 44 76 chrX 134982643 134983415 -27616515 + L1ME LINE L1 464 1210 -5320 1827 140 24 7 chrX 134983415 134983708 -27616222 + AluSx SINE Alu 1 298 -14 1785 249 44 76 chrX 134983708 134983748 -27616182 + L1ME LINE L1 1210 1250 -5280 404 161 0 0 chrX 134983749 134983811 -27616119 + AluJ/FRAM SINE Alu 233 294 -8 781 129 0 0 chrX 134983822 134983938 -27615992 + L1PA15 LINE L1 6029 6144 -21 2010 129 0 0 chrX 134984035 134984344 -27615586 + AluSx SINE Alu 1 309 0 404 246 54 62 chrX 134984362 134984622 -27615308 + L1ME LINE L1 1232 1489 -5041 1710 144 0 17 chrX 134984634 134984933 -27614997 + AluJo SINE Alu 1 294 -18 653 213 62 0 chrX 134984936 134985096 -27614834 + L1ME LINE L1 1732 1901 -4639 2677 174 19 0 chrX 134985136 134985567 -27614363 - MER70A LTR ERVL 0 472 34 2290 77 0 13 chrX 134985594 134985905 -27614025 + AluSc SINE Alu 3 309 0 898 225 0 0 chrX 134986474 134986647 -27613283 + FAM SINE Alu 1 173 -2 400 301 69 80 chrX 134986654 134986877 -27613053 + L1ME4a LINE L1 5630 5851 -313 2163 97 0 3 chrX 134986877 134987176 -27612754 - AluSg1 SINE Alu -11 298 1 400 301 69 80 chrX 134987176 134987241 -27612689 + L1ME4a LINE L1 5851 5915 -249 455 366 53 16 chrX 134987262 134987505 -27612425 - L2 LINE L2 0 3272 3021 33 66 0 0 chrX 134987572 134987633 -27612297 + AT_rich Low_complexity Low_complexity 1 61 0 2074 124 7 3 chrX 134987726 134988033 -27611897 - AluSx SINE Alu -2 310 3 2237 107 0 3 chrX 134988079 134988388 -27611542 + AluSc SINE Alu 1 308 -1 1498 148 0 112 chrX 134988499 134988838 -27611092 + AluJo SINE Alu 1 301 -11 1548 210 38 69 chrX 134988984 134989301 -27610629 + MLT1C LTR MaLR 6 305 -162 1186 189 156 40 chrX 134989301 134989621 -27610309 + MLT2D LTR ERVL 1 371 -43 1683 170 3 26 chrX 134989621 134989933 -27609997 + AluJo SINE Alu 1 305 -7 1186 189 156 40 chrX 134989933 134989983 -27609947 + MLT2D LTR ERVL 371 414 0 1548 210 38 69 chrX 134989983 134990142 -27609788 + MLT1C LTR MaLR 305 467 0 262 283 117 107 chrX 134990299 134990359 -27609571 + MIR SINE MIR 47 105 -157 6952 52 3 9 chrX 134990359 134991235 -27608695 + L1PA8 LINE L1 5300 6170 -2 262 283 117 107 chrX 134991235 134991326 -27608604 + MIR SINE MIR 105 203 -59 1518 119 119 11 chrX 134991326 134991604 -27608326 + AluSg SINE Alu 1 308 -2 262 283 117 107 chrX 134991604 134991656 -27608274 + MIR SINE MIR 203 253 -9 240 261 0 0 chrX 134991656 134991702 -27608228 + polypyrimidine Low_complexity Low_complexity 2 47 0 551 252 157 7 chrX 134992760 134992907 -27607023 + MER5A DNA MER1_type 21 189 0 595 279 92 22 chrX 134993254 134993483 -27606447 + MIR SINE MIR 6 250 -12 1429 83 0 69 chrX 134993563 134993652 -27606278 + L1PB3 LINE L1 5951 6045 -109 2298 47 9 28 chrX 134993652 134993969 -27605961 + AluY SINE Alu 1 311 0 1429 83 0 69 chrX 134993969 134994097 -27605833 + L1PB3 LINE L1 6045 6153 -1 696 256 0 0 chrX 134994187 134994347 -27605583 + AluJb SINE Alu 141 300 -12 233 119 24 0 chrX 134994348 134994390 -27605540 + GA-rich Low_complexity Low_complexity 2 44 0 2190 104 0 0 chrX 134994418 134994717 -27605213 - AluSx SINE Alu -13 299 1 1527 172 34 7 chrX 134994740 134995036 -27604894 - AluJo SINE Alu -8 304 1 21 0 0 0 chrX 134995036 134995057 -27604873 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chrX 134995154 134995192 -27604738 + AT_rich Low_complexity Low_complexity 1 38 0 352 228 126 92 chrX 134995208 134995533 -27604397 - L1M4 LINE L1 -1494 4652 4317 22 0 0 0 chrX 134995663 134995685 -27604245 + AT_rich Low_complexity Low_complexity 1 22 0 2218 94 0 3 chrX 134995695 134996003 -27603927 + AluSx SINE Alu 1 307 -5 2198 153 12 57 chrX 134996003 134996032 -27603898 - MER57A LTR ERV1 -13 390 361 1725 151 0 77 chrX 134996032 134996180 -27603750 + AluJo SINE Alu 1 113 -199 2013 108 0 14 chrX 134996180 134996524 -27603406 + AluSq SINE Alu 1 340 0 1725 151 0 77 chrX 134996524 134996699 -27603231 + AluJo SINE Alu 113 300 -12 2198 153 12 57 chrX 134996699 134996825 -27603105 - MER57A LTR ERV1 -42 361 231 2242 72 0 41 chrX 134996825 134997144 -27602786 + AluSc SINE Alu 1 306 -3 2198 153 12 57 chrX 134997144 134997394 -27602536 - MER57A LTR ERV1 -172 231 1 256 222 38 108 chrX 134997408 134997574 -27602356 - L1ME4a LINE L1 -3 6118 5942 2105 131 0 6 chrX 134997574 134997888 -27602042 - AluSq SINE Alu -1 312 1 1827 166 0 3 chrX 134997888 134998188 -27601742 - AluJb SINE Alu -9 303 4 256 222 38 108 chrX 134998188 134998205 -27601725 - L1ME4a LINE L1 -157 5964 5947 622 262 10 53 chrX 134999083 134999269 -27600661 + MIR SINE MIR 30 205 -57 1577 138 10 31 chrX 134999269 134999558 -27600372 + AluJo SINE Alu 21 303 -9 622 262 10 53 chrX 134999558 134999609 -27600321 + MIR SINE MIR 205 257 -5 2276 96 0 3 chrX 135000093 135000406 -27599524 + AluSx SINE Alu 1 312 0 1080 98 0 43 chrX 135000433 135000597 -27599333 - AluSg SINE Alu -153 157 1 478 291 40 54 chrX 135000610 135000746 -27599184 + L1ME4a LINE L1 5474 5610 -511 853 189 0 24 chrX 135000746 135000915 -27599015 + FRAM SINE Alu 2 166 0 478 291 40 54 chrX 135000915 135001128 -27598802 + L1ME4a LINE L1 5610 5818 -303 578 164 172 8 chrX 135001136 135001258 -27598672 + AluJb SINE Alu 148 289 -23 210 71 0 0 chrX 135001338 135001366 -27598564 + (TG)n Simple_repeat Simple_repeat 2 29 0 225 261 18 72 chrX 135001370 135001481 -27598449 + L1ME4a LINE L1 5960 6064 -57 27 49 0 0 chrX 135001510 135001551 -27598379 + AT_rich Low_complexity Low_complexity 1 41 0 553 277 104 27 chrX 135002190 135002410 -27597520 - MIR SINE MIR -6 256 20 333 317 42 28 chrX 135002419 135002561 -27597369 - MIR3 SINE MIR -49 159 16 219 259 118 35 chrX 135003425 135003510 -27596420 - MIR SINE MIR -102 160 69 1760 113 78 17 chrX 135003576 135003869 -27596061 + AluSx SINE Alu 1 311 -1 2319 79 0 16 chrX 135003893 135004209 -27595721 - AluY SINE Alu 0 311 1 752 138 7 97 chrX 135004749 135004894 -27595036 - FLAM_A SINE Alu -1 132 1 1460 165 86 14 chrX 135004928 135005219 -27594711 - AluJo SINE Alu 0 312 1 1086 177 35 5 chrX 135005260 135005458 -27594472 + MER3 DNA MER1_type 1 204 -5 205 296 16 11 chrX 135005959 135006108 -27593822 - MIR3 SINE MIR -8 200 9 593 242 81 37 chrX 135007200 135007438 -27592492 + MIR SINE MIR 9 255 -7 2197 74 37 0 chrX 135007856 135008153 -27591777 + AluSc SINE Alu 1 308 -1 1721 145 29 23 chrX 135008186 135008496 -27591434 - AluJo SINE Alu 0 312 1 192 40 0 0 chrX 135008540 135008565 -27591365 + (A)n Simple_repeat Simple_repeat 1 25 0 304 243 14 14 chrX 135008929 135008999 -27590931 + MIR SINE MIR 93 162 -100 1898 129 3 19 chrX 135009073 135009382 -27590548 + AluJb SINE Alu 7 310 -2 663 273 11 6 chrX 135010342 135010518 -27589412 - L3 LINE CR1 -137 1440 1264 2130 105 0 3 chrX 135010777 135011071 -27588859 - AluSx SINE Alu -16 296 4 222 37 0 0 chrX 135011491 135011518 -27588412 + (CAGC)n Simple_repeat Simple_repeat 4 30 0 1808 149 0 32 chrX 135012173 135012482 -27587448 + AluJo SINE Alu 1 299 -13 860 153 122 41 chrX 135012621 135012757 -27587173 - AluJb SINE Alu -15 297 139 3920 118 8 47 chrX 135012757 135013417 -27586513 + MER51A LTR ERV1 1 634 0 860 153 122 41 chrX 135013417 135013476 -27586454 - AluJb SINE Alu -173 139 86 648 202 35 68 chrX 135013950 135013981 -27585949 - MIR SINE MIR -63 145 115 1567 118 91 27 chrX 135013981 135014286 -27585644 - AluSg SINE Alu 0 322 1 648 202 35 68 chrX 135014286 135014453 -27585477 - MIR SINE MIR -93 115 3 1090 121 181 25 chrX 135015774 135015973 -27583957 + MER30 DNA MER1_type 1 230 0 1613 156 0 48 chrX 135017791 135018080 -27581850 + AluJo SINE Alu 7 281 -31 1613 166 3 7 chrX 135018109 135018392 -27581538 + AluJo SINE Alu 1 282 -30 2135 119 0 0 chrX 135018420 135018722 -27581208 + AluSx SINE Alu 5 306 -6 2599 188 8 12 chrX 135018730 135019230 -27580700 + L1MB5 LINE L1 5646 6143 -31 2364 82 0 3 chrX 135019265 135019569 -27580361 - AluSq SINE Alu -10 303 1 591 313 77 0 chrX 135019696 135019904 -27580026 + MIR SINE MIR 12 235 -27 2558 52 0 0 chrX 135019959 135020266 -27579664 + AluY SINE Alu 1 307 -4 1352 131 131 12 chrX 135020532 135020802 -27579128 - AluSg1 SINE Alu 0 303 5 1499 180 3 50 chrX 135021214 135021537 -27578393 + AluJb SINE Alu 1 308 -4 1075 86 0 0 chrX 135021563 135021702 -27578228 - AluSg SINE Alu -171 139 1 215 170 0 43 chrX 135022100 135022147 -27577783 + GA-rich Low_complexity Low_complexity 1 45 0 199 167 83 21 chrX 135022650 135022698 -27577232 + MIR3 SINE MIR 142 192 -16 2211 101 0 3 chrX 135022893 135023199 -27576731 + AluSx SINE Alu 1 305 -7 1097 126 6 0 chrX 135023199 135023366 -27576564 + AluSg/x SINE Alu 132 299 -11 248 260 82 14 chrX 135023806 135023879 -27576051 + MIR SINE MIR 92 169 -93 377 224 163 0 chrX 135024137 135024235 -27575695 + L2 LINE L2 3199 3312 -1 401 276 29 0 chrX 135024442 135024547 -27575383 - MIR SINE MIR -126 136 29 1825 143 23 10 chrX 135024584 135024891 -27575039 - AluJb SINE Alu -1 311 1 208 339 49 27 chrX 135025539 135025722 -27574208 - L2 LINE L2 -575 2739 2553 3666 86 31 150 chrX 135026057 135026777 -27573153 - MER51A LTR ERV1 0 634 1 288 232 29 0 chrX 135027023 135027092 -27572838 + Charlie8 DNA MER1_type 72 142 -2275 1656 169 22 0 chrX 135027170 135027483 -27572447 + AluSx SINE Alu 1 319 0 392 240 16 58 chrX 135027606 135027727 -27572203 - L2 LINE L2 -190 3082 2967 933 118 147 49 chrX 135027853 135028057 -27571873 + AluJb SINE Alu 87 310 -2 812 144 25 0 chrX 135028075 135028193 -27571737 + AluJb SINE Alu 4 124 -188 198 303 0 15 chrX 135028219 135028285 -27571645 - L2 LINE L2 -606 2708 2644 417 123 0 0 chrX 135028343 135028408 -27571522 + (TCCCC)n Simple_repeat Simple_repeat 2 66 0 1463 184 58 0 chrX 135028408 135028685 -27571245 - AluJb SINE Alu -17 295 3 219 267 0 0 chrX 135029004 135029049 -27570881 + L2 LINE L2 3259 3303 -10 309 376 16 8 chrX 135029153 135029278 -27570652 + MIR SINE MIR 16 141 -67 2110 156 29 34 chrX 135029356 135029766 -27570164 + L1MB5 LINE L1 5767 6174 0 22 35 0 0 chrX 135030206 135030235 -27569695 + GC_rich Low_complexity Low_complexity 1 29 0 376 289 92 21 chrX 135031159 135031301 -27568629 + MIR3 SINE MIR 35 186 -22 202 279 29 0 chrX 135032097 135032201 -27567729 + (CAGAG)n Simple_repeat Simple_repeat 5 111 0 283 304 68 12 chrX 135035838 135035999 -27563931 - L2 LINE L2 -18 3295 3126 625 288 38 14 chrX 135037084 135037296 -27562634 - MIR SINE MIR -16 246 30 1205 129 11 6 chrX 135038224 135038402 -27561528 - AluSg/x SINE Alu 0 310 132 2159 113 31 0 chrX 135038402 135038693 -27561237 - AluSx SINE Alu -12 300 1 2242 86 28 0 chrX 135038826 135039117 -27560813 - AluSp SINE Alu -14 299 1 298 262 12 12 chrX 135040353 135040437 -27559493 + MER5B DNA MER1_type 34 117 -61 231 36 0 0 chrX 135040440 135040468 -27559462 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 2054 138 0 7 chrX 135040486 135040782 -27559148 - AluSx SINE Alu -18 294 1 2429 85 3 3 chrX 135040800 135041107 -27558823 - AluSg SINE Alu -3 307 1 214 88 0 0 chrX 135041108 135041142 -27558788 + L3 LINE CR1 1542 1575 -2 2420 78 20 0 chrX 135042174 135042470 -27557460 + AluSp SINE Alu 3 304 -9 22 70 0 0 chrX 135042610 135042653 -27557277 + AT_rich Low_complexity Low_complexity 1 43 0 2045 121 31 0 chrX 135042706 135042996 -27556934 - AluSx SINE Alu -13 299 1 2277 109 0 3 chrX 135043006 135043309 -27556621 - AluSg SINE Alu -8 302 1 2091 133 7 3 chrX 135043578 135043872 -27556058 + AluSx SINE Alu 1 295 -17 261 218 18 0 chrX 135043909 135043964 -27555966 + L2 LINE L2 3196 3251 -21 1783 176 71 6 chrX 135044040 135044364 -27555566 + MLT1A1 LTR MaLR 21 365 0 2359 103 3 0 chrX 135044643 135044953 -27554977 - AluSq SINE Alu -2 311 1 898 293 113 29 chrX 135046093 135046837 -27553093 + L2 LINE L2 2512 3313 0 438 191 92 69 chrX 135046970 135047101 -27552829 - L2 LINE L2 0 3313 3180 3046 130 6 43 chrX 135047428 135047573 -27552357 - MER101 LTR ERV1 0 474 325 1939 138 32 0 chrX 135047573 135047856 -27552074 - AluSx SINE Alu -20 292 1 3046 130 6 43 chrX 135047856 135048202 -27551728 - MER101 LTR ERV1 -149 325 1 2221 118 3 3 chrX 135048785 135049089 -27550841 - AluSx SINE Alu -8 304 1 2129 114 0 10 chrX 135049499 135049796 -27550134 - AluSx SINE Alu -18 294 1 1751 185 10 0 chrX 135049989 135050297 -27549633 - AluJb SINE Alu -1 311 1 1018 111 0 0 chrX 135050297 135050432 -27549498 - AluJb SINE Alu -177 135 1 2239 118 0 3 chrX 135051938 135052234 -27547696 - AluSx SINE Alu -17 295 1 24 0 0 0 chrX 135052234 135052258 -27547672 + AT_rich Low_complexity Low_complexity 1 24 0 240 284 81 0 chrX 135052341 135052415 -27547515 - MIR SINE MIR 0 262 183 2144 111 3 0 chrX 135053296 135053584 -27546346 - AluSx SINE Alu -21 291 3 2272 114 0 0 chrX 135055326 135055624 -27544306 - AluSx SINE Alu -14 298 1 399 282 61 55 chrX 135056650 135056831 -27543099 + MIR3 SINE MIR 19 200 -8 343 367 0 0 chrX 135058179 135058288 -27541642 - L2 LINE L2 0 3272 3164 1892 170 0 7 chrX 135058316 135058622 -27541308 + AluJb SINE Alu 1 304 -8 861 142 0 0 chrX 135058644 135058764 -27541166 + FAM SINE Alu 45 164 -21 1758 80 145 23 chrX 135058773 135059035 -27540895 + AluY SINE Alu 1 294 -7 242 272 120 40 chrX 135059039 135059164 -27540766 + L2 LINE L2 3122 3256 -16 339 177 9 44 chrX 135060051 135060164 -27539766 + T-rich Low_complexity Low_complexity 3 111 0 1045 170 0 0 chrX 135061321 135061486 -27538444 - FRAM SINE Alu -1 165 1 214 48 0 48 chrX 135061501 135061543 -27538387 + (TTTTTA)n Simple_repeat Simple_repeat 2 41 0 186 263 111 40 chrX 135061975 135062074 -27537856 + MIR SINE MIR 113 218 -44 4911 131 59 84 chrX 135063563 135063724 -27536206 - L1MC1 LINE L1 -60 6273 6109 1861 128 15 11 chrX 135063724 135063998 -27535932 - AluSx SINE Alu -24 288 14 4911 131 59 84 chrX 135063998 135064801 -27535129 - L1MC1 LINE L1 -224 6109 5287 2406 49 0 17 chrX 135064801 135065128 -27534802 - AluY SINE Alu 0 322 1 2430 73 13 3 chrX 135065128 135065428 -27534502 - AluY SINE Alu -8 303 1 4911 131 59 84 chrX 135065428 135065466 -27534464 - L1MC1 LINE L1 -1002 5331 5294 180 0 0 0 chrX 135067212 135067232 -27532698 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 2125 117 0 0 chrX 135067239 135067520 -27532410 - AluSx SINE Alu -31 281 1 304 284 142 0 chrX 135067793 135067941 -27531989 - MIR SINE MIR -14 248 80 3029 184 72 10 chrX 135067991 135068588 -27531342 - L1MB5 LINE L1 -15 6159 5526 832 157 77 139 chrX 135068857 135068971 -27530959 + L1MB8 LINE L1 5899 6019 -159 2445 69 0 28 chrX 135068971 135069289 -27530641 - AluY SINE Alu -2 309 1 832 157 77 139 chrX 135069289 135069389 -27530541 + L1MB8 LINE L1 6019 6093 -85 1968 148 30 7 chrX 135069389 135069694 -27530236 + AluJb SINE Alu 1 312 0 832 157 77 139 chrX 135069694 135069765 -27530165 + L1MB8 LINE L1 6093 6167 -11 586 204 45 70 chrX 135069796 135069997 -27529933 + MIR SINE MIR 67 262 0 210 304 0 0 chrX 135071115 135071171 -27528759 + (CA)n Simple_repeat Simple_repeat 1 56 0 1160 157 14 18 chrX 135073442 135073665 -27526265 - L1MB8 LINE L1 -9 6169 5948 207 0 0 0 chrX 135074163 135074186 -27525744 + (TG)n Simple_repeat Simple_repeat 2 24 0 2263 94 34 0 chrX 135075326 135075623 -27524307 - AluSx SINE Alu -5 307 1 2208 98 0 3 chrX 135078629 135078915 -27521015 + AluSx SINE Alu 1 285 -27 706 162 0 63 chrX 135079435 135079577 -27520353 - FRAM SINE Alu -15 161 29 324 232 40 30 chrX 135079671 135079692 -27520238 - MER94 DNA DNA -34 100 81 1804 155 3 17 chrX 135079692 135079988 -27519942 - AluJo SINE Alu -20 292 1 324 232 40 30 chrX 135079988 135080065 -27519865 - MER94 DNA DNA -53 81 1 3390 102 134 33 chrX 135080336 135080912 -27519018 - MER51A LTR ERV1 0 634 1 397 315 99 0 chrX 135082125 135082236 -27517694 + L2 LINE L2 3145 3266 -6 387 151 21 54 chrX 135083217 135083310 -27516620 + L1MB7 LINE L1 5581 5670 -514 2286 161 15 31 chrX 135083427 135083905 -27516025 + L1MB7 LINE L1 5695 6164 -20 745 168 0 8 chrX 135084241 135084360 -27515570 + FLAM_C SINE Alu 4 121 -22 228 35 0 0 chrX 135084360 135084389 -27515541 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 217 279 0 16 chrX 135085276 135085337 -27514593 + CT-rich Low_complexity Low_complexity 1 60 0 1989 163 0 3 chrX 135085337 135085644 -27514286 - AluJo SINE Alu -6 306 1 207 100 0 0 chrX 135087011 135087041 -27512889 + (TTC)n Simple_repeat Simple_repeat 1 30 0 301 191 15 0 chrX 135089318 135089386 -27510544 + MER116 DNA Mariner 10 78 -2 480 291 16 0 chrX 135089767 135089894 -27510036 - MIR SINE MIR -74 188 60 1210 219 61 7 chrX 135089898 135090177 -27509753 + AluJo SINE Alu 1 294 -18 2082 135 7 0 chrX 135090177 135090473 -27509457 - AluSx SINE Alu -14 298 1 22 0 0 0 chrX 135090474 135090496 -27509434 + AT_rich Low_complexity Low_complexity 1 22 0 1951 151 128 10 chrX 135090780 135091031 -27508899 - MSTB1 LTR MaLR 0 432 119 2298 115 0 0 chrX 135091031 135091326 -27508604 + AluSx SINE Alu 2 296 -16 1951 151 128 10 chrX 135091326 135091458 -27508472 - MSTB1 LTR MaLR -313 119 4 2346 168 24 5 chrX 135091511 135091923 -27508007 - MSTB LTR MaLR -2 424 5 2628 10 0 0 chrX 135092707 135093034 -27506896 + AluYb8 SINE Alu 1 327 0 193 344 133 11 chrX 135095573 135095663 -27504267 + L2 LINE L2 3197 3297 -16 183 48 48 24 chrX 135097001 135097043 -27502887 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1732 148 0 4 chrX 135097073 135097330 -27502600 - AluJo SINE Alu -52 260 5 2013 128 7 7 chrX 135097656 135097953 -27501977 + AluJo SINE Alu 1 297 -15 216 0 0 0 chrX 135100294 135100318 -27499612 + (A)n Simple_repeat Simple_repeat 1 24 0 880 162 40 5 chrX 135100318 135100516 -27499414 - L1MC3 LINE L1 -6 7779 7575 * 1722 166 140 35 chrX 135100511 135100968 -27498962 - L1MB8 LINE L1 0 6178 5674 539 114 9 38 chrX 135100967 135101072 -27498858 - L1MC3 LINE L1 -195 7590 7489 * 2556 91 242 62 chrX 135101230 135101767 -27498163 + MER51A LTR ERV1 1 634 0 2055 146 50 11 chrX 135101767 135102130 -27497800 - MER57A LTR ERV1 -19 384 8 181 237 26 0 chrX 135102370 135102408 -27497522 - MIR SINE MIR -137 71 33 2529 74 3 0 chrX 135103052 135103426 -27496504 + AluSp SINE Alu 3 377 0 197 307 13 27 chrX 135104415 135104490 -27495440 - MER5A DNA MER1_type -14 175 102 2482 82 0 0 chrX 135105238 135105542 -27494388 + AluSx SINE Alu 1 304 -8 202 250 0 0 chrX 135105860 135105904 -27494026 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2085 147 0 0 chrX 135110456 135110755 -27489175 + AluJb SINE Alu 1 299 -13 2482 77 0 0 chrX 135111021 135111321 -27488609 - AluSx SINE Alu -11 301 2 300 53 0 0 chrX 135112092 135112130 -27487800 + (TG)n Simple_repeat Simple_repeat 2 39 0 556 264 66 36 chrX 135112827 135112994 -27486936 + MIR3 SINE MIR 30 201 -7 712 268 137 43 chrX 135114612 135114877 -27485053 + L1ME4a LINE L1 5556 5795 -326 2154 124 3 0 chrX 135114877 135115168 -27484762 + AluSx SINE Alu 2 293 -19 712 268 137 43 chrX 135115168 135115391 -27484539 + L1ME4a LINE L1 5795 6090 -31 2044 109 46 0 chrX 135115801 135116085 -27483845 - AluSx SINE Alu -15 297 1 263 28 28 0 chrX 135116591 135116627 -27483303 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1680 166 22 0 chrX 135116638 135116909 -27483021 - AluJo SINE Alu -35 277 1 183 339 31 0 chrX 135117769 135117834 -27482096 - L3b LINE CR1 0 1583 1517 205 241 0 37 chrX 135118297 135118351 -27481579 - L2 LINE L2 -18 3295 3244 * 312 271 28 37 chrX 135118332 135118439 -27481491 - MIR SINE MIR -91 171 66 450 0 0 0 chrX 135119888 135119938 -27479992 + (CA)n Simple_repeat Simple_repeat 2 51 0 344 206 54 11 chrX 135120633 135120725 -27479205 + L3 LINE CR1 1471 1566 -11 208 194 0 0 chrX 135120986 135121022 -27478908 - MER5A DNA MER1_type 0 189 154 738 132 9 0 chrX 135121139 135121253 -27478677 - MER5A DNA MER1_type -73 116 2 227 234 0 39 chrX 135121475 135121552 -27478378 + A-rich Low_complexity Low_complexity 5 78 0 210 37 0 0 chrX 135122260 135122287 -27477643 + (TC)n Simple_repeat Simple_repeat 1 27 0 192 40 0 0 chrX 135122286 135122311 -27477619 + (CA)n Simple_repeat Simple_repeat 1 25 0 * 192 77 0 0 chrX 135122998 135123024 -27476906 + (T)n Simple_repeat Simple_repeat 1 26 0 192 227 45 0 chrX 135124022 135124066 -27475864 + MIR3 SINE MIR 115 160 -48 1918 135 0 26 chrX 135124074 135124378 -27475552 - AluSx SINE Alu -16 296 1 259 144 67 89 chrX 135124909 135124999 -27474931 + MER94 DNA DNA 1 88 -46 656 112 20 0 chrX 135125004 135125102 -27474828 - AluSg/x SINE Alu -17 293 194 2243 92 20 0 chrX 135125118 135125412 -27474518 - AluSx SINE Alu -12 300 1 1138 131 1 27 chrX 135126506 135126829 -27473101 - AluJo SINE Alu -7 305 21 2379 99 10 0 chrX 135126928 135127230 -27472700 - AluSp SINE Alu -8 305 1 23 0 0 0 chrX 135127537 135127560 -27472370 + AT_rich Low_complexity Low_complexity 1 23 0 2338 107 3 3 chrX 135128103 135128413 -27471517 - AluJo SINE Alu -2 310 1 1031 264 47 0 chrX 135131175 135131410 -27468520 + MIR SINE MIR 6 251 -11 1246 178 9 0 chrX 135132281 135132515 -27467415 + MER46A DNA MER2_type 1 236 0 290 167 0 0 chrX 135133480 135133528 -27466402 + L2 LINE L2 3256 3303 -10 387 264 0 47 chrX 135133831 135133960 -27465970 + MIR3 SINE MIR 86 208 0 258 40 100 0 chrX 135134867 135134917 -27465013 + CT-rich Low_complexity Low_complexity 4 58 0 2337 112 0 0 chrX 135134922 135135225 -27464705 - AluSg SINE Alu -6 304 2 741 211 7 20 chrX 135136572 135136719 -27463211 - FRAM SINE Alu -21 155 11 225 191 0 21 chrX 135138547 135138594 -27461336 + CT-rich Low_complexity Low_complexity 2 47 0 213 39 0 0 chrX 135139762 135139788 -27460142 + (TTG)n Simple_repeat Simple_repeat 2 27 0 296 275 77 11 chrX 135142034 135142125 -27457805 - L2 LINE L2 -8 3264 3168 21 0 0 0 chrX 135143111 135143132 -27456798 + AT_rich Low_complexity Low_complexity 1 21 0 2227 107 0 23 chrX 135143255 135143563 -27456367 - AluY SINE Alu -10 301 1 486 0 0 0 chrX 135143617 135143671 -27456259 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 320 213 33 0 chrX 135143674 135143735 -27456195 - AluSc SINE Alu -23 276 214 1630 145 0 0 chrX 135143750 135143978 -27455952 - AluSx SINE Alu -57 255 28 292 29 0 0 chrX 135144143 135144177 -27455753 + AluY SINE Alu 17 50 -251 21 0 0 0 chrX 135145256 135145277 -27454653 + AT_rich Low_complexity Low_complexity 1 21 0 434 57 0 0 chrX 135147539 135147592 -27452338 + MADE1 DNA Mariner 1 53 -27 204 40 0 0 chrX 135147618 135147643 -27452287 + (TG)n Simple_repeat Simple_repeat 1 25 0 2010 127 6 25 chrX 135148159 135148501 -27451429 - AluSx SINE Alu 0 312 5 1661 194 3 3 chrX 135148967 135149256 -27450674 - AluJo SINE Alu -23 289 1 381 43 0 0 chrX 135149817 135149864 -27450066 + (TG)n Simple_repeat Simple_repeat 2 48 0 2280 118 0 0 chrX 135150499 135150805 -27449125 + AluSx SINE Alu 1 306 -6 204 286 33 33 chrX 135150890 135150981 -27448949 - MIR SINE MIR -119 143 53 296 0 51 0 chrX 135151343 135151382 -27448548 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 2033 114 0 7 chrX 135151392 135151672 -27448258 - AluSx SINE Alu -34 278 1 2291 116 0 0 chrX 135152556 135152858 -27447072 + AluSx SINE Alu 1 302 -10 1000 231 150 50 chrX 135155876 135156161 -27443769 + MSTD LTR MaLR 2 332 -64 2082 134 6 29 chrX 135156161 135156474 -27443456 - AluJb SINE Alu -6 306 1 1000 231 150 50 chrX 135156474 135156547 -27443383 + MSTD LTR MaLR 332 396 0 515 292 8 8 chrX 135156673 135156803 -27443127 - L2 LINE L2 -7 3265 3136 2256 107 0 13 chrX 135156842 135157142 -27442788 + AluSx SINE Alu 1 296 -16 737 171 62 7 chrX 135157250 135157396 -27442534 - MER5A DNA MER1_type -35 154 1 2277 114 0 0 chrX 135157678 135157977 -27441953 + AluSx SINE Alu 1 299 -13 1169 236 143 45 chrX 135158221 135158780 -27441150 - MLT1L LTR MaLR -1 614 1 1563 165 49 25 chrX 135159030 135159315 -27440615 - AluJb SINE Alu -10 302 11 477 258 40 0 chrX 135159352 135159476 -27440454 - L3 LINE CR1 -78 1499 1371 2077 148 0 0 chrX 135160368 135160665 -27439265 - AluSx SINE Alu -15 297 1 819 159 8 0 chrX 135160991 135161123 -27438807 + AluJo/FLAM SINE Alu 1 133 -179 1596 157 13 60 chrX 135161126 135161426 -27438504 + AluJo SINE Alu 1 286 -26 252 0 0 0 chrX 135161430 135161458 -27438472 + (CAT)n Simple_repeat Simple_repeat 2 29 0 327 212 62 35 chrX 135161563 135161676 -27438254 - MARNA DNA Mariner -173 413 298 337 310 33 45 chrX 135161787 135162029 -27437901 - MARNA DNA Mariner -330 256 18 32575 109 9 51 chrX 135162453 135168878 -27431052 - L1PA7 LINE L1 0 6154 9 1639 173 26 0 chrX 135168884 135169155 -27430775 - AluJb SINE Alu -11 301 24 642 241 35 26 chrX 135169184 135169390 -27430540 - MIR SINE MIR -25 237 32 454 242 20 0 chrX 135169450 135169549 -27430381 - MER5A DNA MER1_type -80 109 9 2528 110 31 14 chrX 135169957 135170313 -27429617 - THE1B LTR MaLR -2 362 1 1803 164 3 7 chrX 135171100 135171392 -27428538 + AluJo SINE Alu 1 291 -21 566 224 0 0 chrX 135173213 135173329 -27426601 + L1PB4 LINE L1 6034 6149 -7 204 231 0 0 chrX 135173894 135173933 -27425997 + GA-rich Low_complexity Low_complexity 2 40 0 300 307 104 40 chrX 135174848 135175099 -27424831 - L3 LINE CR1 -852 725 459 550 234 114 66 chrX 135175224 135175451 -27424479 - MER93a LTR ERV1 0 402 165 1053 96 37 0 chrX 135175503 135175638 -27424292 - AluSg SINE Alu -170 140 1 1948 151 0 13 chrX 135175642 135175947 -27423983 - AluJb SINE Alu -11 301 1 298 364 0 0 chrX 135176405 135176504 -27423426 - L3 LINE CR1 -1273 304 206 361 264 24 40 chrX 135177276 135177401 -27422529 + L2 LINE L2 3150 3272 0 236 275 143 11 chrX 135177582 135177673 -27422257 + L2 LINE L2 3160 3262 -10 * 356 369 25 6 chrX 135177671 135177831 -27422099 + MIR3 SINE MIR 37 199 -9 1729 161 9 9 chrX 135179771 135180093 -27419837 - MER33 DNA MER1_type 0 324 3 279 79 0 0 chrX 135180253 135180291 -27419639 + (CAGG)n Simple_repeat Simple_repeat 1 38 0 1846 124 32 14 chrX 135180472 135180601 -27419329 + AluSx SINE Alu 1 126 -186 2480 74 0 0 chrX 135180601 135180897 -27419033 + AluY SINE Alu 1 296 -15 1846 124 32 14 chrX 135180897 135181049 -27418881 + AluSx SINE Alu 126 287 -25 476 100 0 33 chrX 135181057 135181147 -27418783 + SVA Other Other 517 603 -783 234 91 0 0 chrX 135181425 135181458 -27418472 + (T)n Simple_repeat Simple_repeat 1 33 0 313 252 92 17 chrX 135181521 135181640 -27418290 - L1ME4a LINE L1 -18 6103 5976 696 211 0 0 chrX 135182585 135182718 -27417212 - FLAM_A SINE Alu 0 133 1 23 33 0 0 chrX 135182739 135182769 -27417161 + AT_rich Low_complexity Low_complexity 1 30 0 198 103 0 0 chrX 135182901 135182930 -27417000 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1846 155 0 0 chrX 135182935 135183213 -27416717 - AluJo SINE Alu -34 278 1 1685 172 42 7 chrX 135183238 135183523 -27416407 + AluJo SINE Alu 1 295 -17 666 278 43 4 chrX 135183524 135183758 -27416172 - MIR SINE MIR 0 262 20 315 85 0 0 chrX 135183867 135183914 -27416016 + (TG)n Simple_repeat Simple_repeat 2 48 0 2157 118 38 44 chrX 135184190 135184516 -27415414 + THE1B LTR MaLR 1 326 -38 2381 97 3 0 chrX 135184516 135184816 -27415114 - AluSq SINE Alu -12 301 1 2157 118 38 44 chrX 135184816 135184855 -27415075 + THE1B LTR MaLR 326 364 0 1613 152 53 11 chrX 135184945 135185208 -27414722 + AluJb SINE Alu 1 274 -38 342 67 0 0 chrX 135185209 135185254 -27414676 + (GA)n Simple_repeat Simple_repeat 2 46 0 2357 173 62 39 chrX 135185623 135186110 -27413820 - MLT1D LTR MaLR -5 500 3 243 269 69 46 chrX 135186415 135186545 -27413385 - L2 LINE L2 -41 3272 3140 1333 167 18 5 chrX 135186665 135186887 -27413043 - AluSg/x SINE Alu -3 309 85 858 224 104 0 chrX 135186912 135187104 -27412826 - MIR SINE MIR -48 214 3 4486 159 29 63 chrX 135188509 135189608 -27410322 - L1MB2 LINE L1 -2 6169 5109 234 81 0 0 chrX 135189608 135189645 -27410285 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 3163 179 41 48 chrX 135189652 135190128 -27409802 - L1MB2 LINE L1 -1821 4325 3847 659 198 0 8 chrX 135190128 135190249 -27409681 - FLAM_A SINE Alu -13 120 1 3163 179 41 48 chrX 135190249 135190295 -27409635 - L1MB2 LINE L1 -2299 3847 3802 2441 142 49 10 chrX 135190295 135190704 -27409226 - MSTA LTR MaLR 0 428 4 3163 179 41 48 chrX 135190704 135190905 -27409025 - L1MB2 LINE L1 -2344 3802 3606 462 305 108 4 chrX 135191173 135191422 -27408508 - L2 LINE L2 -55 3258 2984 195 42 0 0 chrX 135191438 135191462 -27408468 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2177 122 135 13 chrX 135191566 135191944 -27407986 - MSTB LTR MaLR 0 426 3 300 270 178 7 chrX 135192895 135193047 -27406883 + MIR3 SINE MIR 30 207 -1 441 0 0 0 chrX 135193844 135193893 -27406037 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 2464 91 0 0 chrX 135193923 135194231 -27405699 - AluSx SINE Alu -4 308 1 993 106 0 34 chrX 135195046 135195225 -27404705 + (TCCCC)n Simple_repeat Simple_repeat 4 176 0 524 225 12 12 chrX 135195275 135195448 -27404482 + CT-rich Low_complexity Low_complexity 4 176 0 1588 185 0 28 chrX 135195449 135195736 -27404194 - AluJo SINE Alu -33 279 1 787 168 8 0 chrX 135195739 135195870 -27404060 - AluJo/FLAM SINE Alu -180 132 1 1547 68 43 60 chrX 135197324 135197558 -27402372 + MER30 DNA MER1_type 1 230 0 4079 149 44 20 chrX 135198335 135199045 -27400885 - LTR8A LTR ERV1 0 727 1 3554 138 4 15 chrX 135199984 135200521 -27399409 - MER61E LTR ERV1 -38 531 1 1738 175 3 29 chrX 135201510 135201819 -27398111 + AluJo SINE Alu 1 301 -11 1956 135 7 7 chrX 135202239 135202528 -27397402 - AluJb SINE Alu -23 289 1 28 0 0 0 chrX 135203089 135203117 -27396813 + AT_rich Low_complexity Low_complexity 1 28 0 349 318 56 0 chrX 135203291 135203398 -27396532 - MIR SINE MIR -63 145 33 1920 138 0 42 chrX 135204426 135204738 -27395192 + AluJo SINE Alu 1 299 -13 1808 95 108 182 chrX 135205380 135205636 -27394294 + MSTA LTR MaLR 1 274 -154 261 0 0 0 chrX 135205636 135205665 -27394265 + (TC)n Simple_repeat Simple_repeat 2 30 0 1007 138 11 0 chrX 135205667 135205841 -27394089 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 1808 95 108 182 chrX 135205841 135206043 -27393887 + MSTA LTR MaLR 275 428 0 300 232 152 32 chrX 135206346 135206471 -27393459 + MIR SINE MIR 119 258 -4 282 216 0 0 chrX 135206817 135206868 -27393062 + L1ME4a LINE L1 5988 6038 -83 31 68 0 0 chrX 135206873 135206932 -27392998 + AT_rich Low_complexity Low_complexity 1 59 0 2136 127 0 3 chrX 135207221 135207512 -27392418 + AluJb SINE Alu 3 292 -20 387 214 0 60 chrX 135208224 135208263 -27391667 - L2 LINE L2 -15 3298 3258 2465 101 62 8 chrX 135208263 135208619 -27391311 + THE1C LTR MaLR 1 375 0 387 214 0 60 chrX 135208619 135208696 -27391234 - L2 LINE L2 -55 3258 3189 1075 123 18 6 chrX 135208788 135208951 -27390979 + U1 snRNA snRNA 1 165 0 180 77 0 0 chrX 135209437 135209463 -27390467 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1778 188 0 3 chrX 135209469 135209757 -27390173 - AluJo SINE Alu -25 287 1 228 35 0 0 chrX 135209901 135209930 -27390000 + (TG)n Simple_repeat Simple_repeat 2 30 0 810 218 6 11 chrX 135211022 135211201 -27388729 + MER5B DNA MER1_type 1 178 0 553 236 185 13 chrX 135211228 135211385 -27388545 - MER5A DNA MER1_type -1 188 5 1840 181 7 0 chrX 135211713 135212023 -27387907 + AluJo SINE Alu 1 312 0 226 297 44 2 chrX 135212469 135212555 -27387375 + MIR SINE MIR 4 92 -116 202 329 0 14 chrX 135213204 135213277 -27386653 + MIR SINE MIR 11 82 -180 351 191 0 85 chrX 135213463 135213557 -27386373 + MIR SINE MIR 73 158 -104 883 204 24 0 chrX 135213561 135213728 -27386202 + AluSg/x SINE Alu 134 304 -8 267 244 39 39 chrX 135213731 135213809 -27386121 + MIR SINE MIR 159 236 -26 932 239 55 47 chrX 135213865 135214245 -27385685 - L2 LINE L2 -42 3271 2889 817 184 6 6 chrX 135215611 135215790 -27384140 + CT-rich Low_complexity Low_complexity 2 180 0 280 178 0 0 chrX 135215790 135215835 -27384095 + polypyrimidine Low_complexity Low_complexity 1 45 -305 1758 142 7 25 chrX 135215835 135216117 -27383813 - AluJo SINE Alu -34 278 2 280 178 0 0 chrX 135216117 135216140 -27383790 + polypyrimidine Low_complexity Low_complexity 44 350 0 3006 148 21 40 chrX 135216330 135216851 -27383079 + L1MA9 LINE L1 5743 6253 -59 2198 138 0 3 chrX 135216851 135217155 -27382775 + AluSx SINE Alu 1 303 -9 3006 148 21 40 chrX 135217155 135217214 -27382716 + L1MA9 LINE L1 6253 6312 0 567 225 133 29 chrX 135217226 135217399 -27382531 - MIR SINE MIR -5 257 67 390 258 25 57 chrX 135217439 135217598 -27382332 + MIR SINE MIR 103 256 -6 200 310 23 23 chrX 135218302 135218389 -27381541 + L2 LINE L2 2694 2780 -534 309 289 0 66 chrX 135218446 135218567 -27381363 - L2 LINE L2 0 3313 3201 1179 249 39 48 chrX 135219209 135219796 -27380134 - MER115 DNA AcHobo 0 693 39 218 352 80 0 chrX 135219800 135219888 -27380042 - L2 LINE L2 -52 3220 3126 1230 208 76 26 chrX 135220153 135220495 -27379435 - L1ME3A LINE L1 -160 6010 5652 229 155 121 0 chrX 135220501 135220559 -27379371 - L1MC4 LINE L1 -1 8041 7977 2607 80 14 22 chrX 135220562 135220923 -27379007 + L1PA10 LINE L1 5800 6157 -11 1980 75 0 4 chrX 135220925 135221165 -27378765 + AluSq SINE Alu 1 239 -74 29 28 0 0 chrX 135221186 135221222 -27378708 + AT_rich Low_complexity Low_complexity 1 36 0 1097 107 6 19 chrX 135221867 135222026 -27377904 - FRAM SINE Alu -19 157 1 190 349 57 9 chrX 135222884 135222990 -27376940 + MIR SINE MIR 30 140 -68 763 344 18 18 chrX 135223200 135223526 -27376404 - L3 LINE CR1 -22 1555 1230 2016 144 7 0 chrX 135223563 135223848 -27376082 - AluSx SINE Alu -23 289 3 322 227 0 0 chrX 135224251 135224326 -27375604 - MIR SINE MIR -120 142 68 327 241 23 11 chrX 135224542 135224629 -27375301 - L1M3c LINE L1 -6050 91 4 908 206 22 11 chrX 135224682 135224862 -27375068 + MER58A DNA MER1_type 43 224 0 * 1546 174 106 17 chrX 135224862 135225265 -27374665 + Zaphod DNA AcHobo 3589 4027 -4 1243 246 21 52 chrX 135225447 135225833 -27374097 + MLT1A2 LTR MaLR 1 374 0 2556 190 73 0 chrX 135225833 135226406 -27373524 + MLT1A2-int LTR MaLR 1 732 -639 354 218 46 0 chrX 135226528 135226615 -27373315 + MLT1A2-int LTR MaLR 677 767 -968 2404 164 78 11 chrX 135226751 135227197 -27372733 + MLT1A2-int LTR MaLR 1255 1730 -5 1563 184 79 35 chrX 135227201 135227544 -27372386 + MER31B LTR ERV1 6 363 -103 1130 97 0 55 chrX 135227564 135227729 -27372201 + AluSg/x SINE Alu 134 289 -21 283 222 25 0 chrX 135227753 135227834 -27372096 + MER67B LTR ERV1 579 661 0 337 108 0 108 chrX 135227836 135227901 -27372029 + MLT1B LTR MaLR 1 58 -332 1830 175 32 24 chrX 135227947 135228318 -27371612 + MLT1A2 LTR MaLR 1 374 0 556 123 0 12 chrX 135228890 135228971 -27370959 + MSTD LTR MaLR 1 80 -316 379 156 66 0 chrX 135229130 135229252 -27370678 + (CACGC)n Simple_repeat Simple_repeat 1 130 0 1137 203 130 43 chrX 135231107 135231408 -27368522 + MSTD LTR MaLR 70 396 0 360 128 11 16 chrX 135231772 135231840 -27368090 + L1M3 LINE L1 5408 5474 -709 1583 160 31 35 chrX 135231848 135232135 -27367795 - AluJb SINE Alu -26 286 1 1831 173 31 17 chrX 135232136 135232488 -27367442 - L1MB4 LINE L1 -289 5891 5535 365 254 82 15 chrX 135233176 135233310 -27366620 + MIR3 SINE MIR 53 195 -13 207 0 0 0 chrX 135234034 135234057 -27365873 + (GA)n Simple_repeat Simple_repeat 2 24 0 1344 171 110 8 chrX 135234395 135234659 -27365271 - AluJo SINE Alu -21 291 1 275 229 0 12 chrX 135234710 135234793 -27365137 + C-rich Low_complexity Low_complexity 1 82 0 1779 150 4 7 chrX 135234818 135235091 -27364839 - AluSx SINE Alu -40 272 1 913 138 0 8 chrX 135235107 135235237 -27364693 - AluSq/x SINE Alu -183 129 1 2277 113 0 3 chrX 135235261 135235572 -27364358 - AluSx SINE Alu -2 310 1 30 0 0 0 chrX 135235585 135235615 -27364315 + AT_rich Low_complexity Low_complexity 1 30 0 295 333 9 0 chrX 135236395 135236509 -27363421 - MIR SINE MIR -67 141 27 2161 115 3 34 chrX 135236628 135236950 -27362980 - AluSx SINE Alu 0 312 1 785 176 0 7 chrX 135237096 135237232 -27362698 - AluJb SINE Alu -90 222 88 239 125 36 36 chrX 135237304 135237360 -27362570 - L1M4 LINE L1 -458 5716 5661 1172 136 0 0 chrX 135237360 135237515 -27362415 + AluJb SINE Alu 135 289 -23 401 164 15 0 chrX 135237539 135237606 -27362324 - L1M4 LINE L1 -533 5651 5584 669 155 39 71 chrX 135237842 135237997 -27361933 + MER3 DNA MER1_type 47 196 -13 267 281 37 104 chrX 135238231 135238366 -27361564 - L2 LINE L2 0 3272 3147 456 307 22 0 chrX 135238402 135238539 -27361391 - MIR SINE MIR 0 262 123 902 236 21 57 chrX 135238734 135239065 -27360865 + L1ME4a LINE L1 5596 5914 -207 630 251 117 43 chrX 135239911 135240142 -27359788 + MIR SINE MIR 3 250 -12 399 254 77 15 chrX 135240188 135240318 -27359612 + L2 LINE L2 3172 3309 -4 312 312 48 26 chrX 135240447 135240636 -27359294 + MIR SINE MIR 20 212 -50 1436 103 75 0 chrX 135240894 135241108 -27358822 + MER30 DNA MER1_type 1 230 0 1288 110 5 11 chrX 135241443 135241634 -27358296 + MER4D LTR ERV1 259 448 -455 1606 119 25 8 chrX 135241634 135241877 -27358053 - AluJb SINE Alu -7 305 59 2231 87 17 0 chrX 135241908 135242207 -27357723 + AluY SINE Alu 1 304 -7 2277 120 0 0 chrX 135242398 135242707 -27357223 - AluSx SINE Alu -3 309 1 333 247 52 0 chrX 135243297 135243374 -27356556 + MER91A DNA MER1_type 1 81 -115 322 333 85 8 chrX 135243545 135243803 -27356127 + L2 LINE L2 2454 2731 -583 503 354 34 48 chrX 135243928 135244281 -27355649 + L2 LINE L2 2925 3272 0 4683 172 16 23 chrX 135245054 135245432 -27354498 + L1MB7 LINE L1 5116 5495 -689 2408 100 3 0 chrX 135245432 135245741 -27354189 + AluSq SINE Alu 1 310 -3 4683 172 16 23 chrX 135245741 135245981 -27353949 + L1MB7 LINE L1 5495 5735 -449 2112 120 33 7 chrX 135245981 135246280 -27353650 + AluSx SINE Alu 1 307 -5 4683 172 16 23 chrX 135246280 135246738 -27353192 + L1MB7 LINE L1 5735 6184 0 2645 32 0 23 chrX 135246833 135247142 -27352788 - AluY SINE Alu -9 302 1 22 0 0 73 chrX 135247233 135247274 -27352656 + AT_rich Low_complexity Low_complexity 1 38 0 6705 67 21 1 chrX 135247452 135248685 -27351245 + L1PA14 LINE L1 4906 6158 -3 913 150 0 0 chrX 135248797 135248924 -27351006 + FLAM_C SINE Alu 1 127 -16 351 167 0 0 chrX 135249086 135249140 -27350790 - MLT1A1 LTR MaLR 0 365 312 1223 201 4 12 chrX 135249147 135249396 -27350534 - AluJo SINE Alu -3 309 63 861 179 34 102 chrX 135249398 135249667 -27350263 - MLT1A1 LTR MaLR -44 321 69 1700 178 3 7 chrX 135249667 135249959 -27349971 - AluJo SINE Alu -21 291 1 861 179 34 102 chrX 135249959 135249974 -27349956 - MLT1A1 LTR MaLR -296 69 55 385 279 122 52 chrX 135250273 135250560 -27349370 - L1M4 LINE L1 -1773 4373 4067 1647 176 65 7 chrX 135250696 135250986 -27348944 - AluJb SINE Alu -5 307 1 734 242 29 29 chrX 135251037 135251281 -27348649 + L2 LINE L2 3061 3304 -9 2035 148 7 3 chrX 135251348 135251653 -27348277 + AluJb SINE Alu 1 306 -6 238 267 59 59 chrX 135251709 135251896 -27348034 - L1M4 LINE L1 -2382 3764 3578 202 274 128 69 chrX 135252124 135252204 -27347726 - L2 LINE L2 0 3313 3239 1395 191 88 4 chrX 135252204 135252497 -27347433 + AluJo SINE Alu 1 315 0 202 274 128 69 chrX 135252497 135252537 -27347393 - L2 LINE L2 -74 3239 3203 1547 213 41 60 chrX 135252537 135253068 -27346862 + LTR33 LTR ERVL 1 521 0 202 274 128 69 chrX 135253068 135253149 -27346781 - L2 LINE L2 -110 3203 3098 241 264 66 80 chrX 135253218 135253369 -27346561 - L1M4 LINE L1 -2870 3276 3124 1910 148 0 13 chrX 135253369 135253667 -27346263 - AluJb SINE Alu -18 294 1 241 264 66 80 chrX 135253667 135254031 -27345899 - L1M4 LINE L1 -3022 3124 2768 2100 134 0 10 chrX 135254184 135254483 -27345447 - AluSx SINE Alu -16 296 1 1406 209 35 14 chrX 135254552 135254834 -27345096 - AluJo SINE Alu -24 288 1 451 203 0 0 chrX 135254856 135254935 -27344995 - AluJ/FLAM SINE Alu -232 80 2 2422 82 0 3 chrX 135257132 135257436 -27342494 + AluSq SINE Alu 1 303 -10 1996 167 0 0 chrX 135257500 135257812 -27342118 + AluJo SINE Alu 1 312 0 1360 121 32 89 chrX 135259020 135259268 -27340662 - AluJo SINE Alu -18 294 61 713 136 10 0 chrX 135259270 135259373 -27340557 - AluJb SINE Alu -207 105 2 1988 121 46 0 chrX 135260009 135260170 -27339760 - AluSx SINE Alu -15 297 116 333 0 0 0 chrX 135260170 135260207 -27339723 + (TG)n Simple_repeat Simple_repeat 2 38 0 1988 121 46 0 chrX 135260207 135260327 -27339603 - AluSx SINE Alu -196 116 3 543 267 35 54 chrX 135260877 135261135 -27338795 + MIR SINE MIR 9 261 -1 206 260 55 16 chrX 135261240 135261367 -27338563 + CT-rich Low_complexity Low_complexity 6 137 0 711 261 72 0 chrX 135261492 135261672 -27338258 - MIR SINE MIR -48 214 22 2309 135 6 3 chrX 135262048 135262388 -27337542 - MER61A LTR ERV1 -2 341 1 204 279 39 93 chrX 135262511 135262565 -27337365 + MIR SINE MIR 120 175 -87 3199 107 73 22 chrX 135262565 135263070 -27336860 - LTR26B LTR ERV1 0 531 1 204 279 39 93 chrX 135263070 135263144 -27336786 + MIR SINE MIR 175 241 -21 280 216 10 88 chrX 135263371 135263473 -27336457 + MIR3 SINE MIR 83 176 -32 1423 163 4 21 chrX 135264014 135264247 -27335683 - AluJo SINE Alu -83 229 1 1303 211 71 19 chrX 135264279 135264602 -27335328 + MER58B DNA MER1_type 1 340 -1 2239 108 3 0 chrX 135264771 135265066 -27334864 + AluSx SINE Alu 1 296 -16 596 312 55 13 chrX 135265851 135266088 -27333842 - MIR SINE MIR -2 260 14 1715 159 130 109 chrX 135266608 135266891 -27333039 - LTR49 LTR ERV1 -31 564 289 2463 140 31 17 chrX 135266891 135267312 -27332618 - MSTA LTR MaLR 0 428 2 1715 159 130 109 chrX 135267312 135267580 -27332350 - LTR49 LTR ERV1 -306 289 1 503 266 101 46 chrX 135267633 135267851 -27332079 - MIR SINE MIR -14 248 19 2546 127 49 54 chrX 135267875 135268341 -27331589 + MER88 LTR ERVL 1 464 0 326 257 193 50 chrX 135268853 135269071 -27330859 + MIR SINE MIR 8 256 -6 221 179 0 0 chrX 135269040 135269079 -27330851 + L2 LINE L2 3271 3309 -4 * 249 271 94 0 chrX 135269223 135269308 -27330622 - L1ME LINE L1 -303 5818 5726 267 54 0 0 chrX 135269320 135269357 -27330573 + (TG)n Simple_repeat Simple_repeat 2 38 0 792 260 94 39 chrX 135269651 135269982 -27329948 + LTR33 LTR ERVL 155 503 -18 863 114 16 8 chrX 135271938 135272061 -27327869 - FRAM SINE Alu -20 156 33 354 296 0 0 chrX 135273928 135274016 -27325914 - L2 LINE L2 0 3272 3185 228 91 273 0 chrX 135274371 135274426 -27325504 + AluJ/FRAM SINE Alu 228 297 -5 501 300 43 16 chrX 135274740 135274976 -27324954 + L2 LINE L2 2745 3049 -264 2363 126 48 3 chrX 135276254 135276434 -27323496 + MLT1B LTR MaLR 1 171 -219 192 40 0 0 chrX 135276434 135276459 -27323471 + (CA)n Simple_repeat Simple_repeat 2 26 0 2363 126 48 3 chrX 135276459 135276651 -27323279 + MLT1B LTR MaLR 171 390 0 359 273 28 7 chrX 135276974 135277117 -27322813 - L2 LINE L2 -1619 1695 1550 3331 157 105 27 chrX 135277172 135277846 -27322084 - LTR8A LTR ERV1 0 727 1 2421 260 44 15 chrX 135277847 135278036 -27321894 - L2 LINE L2 -1805 1509 1327 2523 112 28 14 chrX 135278036 135278393 -27321537 + THE1B LTR MaLR 1 362 -2 2421 260 44 15 chrX 135278393 135279014 -27320916 - L2 LINE L2 -1987 1327 675 1530 178 22 22 chrX 135279015 135279285 -27320645 + AluJb SINE Alu 1 270 -42 309 26 0 0 chrX 135279291 135279329 -27320601 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 235 207 35 0 chrX 135279341 135279399 -27320531 - L2 LINE L2 -2630 684 625 192 233 0 0 chrX 135280785 135280828 -27319102 + MIR3 SINE MIR 162 204 -4 206 31 0 31 chrX 135280980 135281012 -27318918 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 24378 92 8 39 chrX 135281013 135281968 -27317962 - L1PA7 LINE L1 -17 6137 5154 9315 41 1 0 chrX 135281968 135283037 -27316893 + MER11C LTR ERVK 1 1070 -1 24378 92 8 39 chrX 135283037 135285916 -27314014 - L1PA7 LINE L1 -1000 5154 2187 240 35 0 0 chrX 135285916 135285945 -27313985 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 24378 92 8 39 chrX 135285945 135287726 -27312204 - L1PA7 LINE L1 -3967 2187 837 2443 76 7 3 chrX 135287726 135288030 -27311900 - AluY SINE Alu -6 305 1 24378 92 8 39 chrX 135288030 135288832 -27311098 - L1PA7 LINE L1 -5317 837 12 1642 210 22 12 chrX 135288975 135289557 -27310373 + L1M4c LINE L1 1663 2338 -4046 10793 215 25 42 chrX 135289567 135290639 -27309291 + L1M4c LINE L1 2439 3527 -2855 1818 158 14 17 chrX 135290639 135290931 -27308999 + AluJb SINE Alu 1 291 -21 10793 215 25 42 chrX 135290931 135290943 -27308987 + L1M4c LINE L1 3527 3538 -2844 1483 61 22 0 chrX 135290943 135291123 -27308807 + L1PA6 LINE L1 5968 6151 -3 10793 215 25 42 chrX 135291123 135291856 -27308074 + L1M4c LINE L1 3538 4282 -2100 1771 176 0 20 chrX 135291856 135292158 -27307772 + AluJb SINE Alu 1 296 -16 10793 215 25 42 chrX 135292158 135292853 -27307077 + L1M4c LINE L1 4282 4987 -1395 2054 152 3 13 chrX 135292853 135293168 -27306762 + AluJb SINE Alu 1 312 0 10793 215 25 42 chrX 135293168 135293364 -27306566 + L1M4c LINE L1 4987 5102 -1280 2634 107 31 6 chrX 135293364 135293719 -27306211 - THE1B LTR MaLR 0 364 1 10793 215 25 42 chrX 135293719 135293875 -27306055 + L1M4c LINE L1 5102 5259 -1123 406 297 68 14 chrX 135294029 135294177 -27305753 + MER5B DNA MER1_type 17 172 -6 267 250 0 0 chrX 135294226 135294278 -27305652 + MER5A DNA MER1_type 9 60 -129 402 269 107 40 chrX 135294831 135294918 -27305012 + MER5A DNA MER1_type 28 108 -81 228 35 0 0 chrX 135294918 135294947 -27304983 + (TA)n Simple_repeat Simple_repeat 1 29 0 1962 150 3 10 chrX 135294947 135295253 -27304677 - AluJb SINE Alu -8 304 1 402 269 107 40 chrX 135295253 135295313 -27304617 + MER5A DNA MER1_type 107 186 -3 941 114 8 8 chrX 135295564 135295696 -27304234 + FLAM_C SINE Alu 2 133 0 1064 191 27 0 chrX 135295756 135295939 -27303991 - MER5A DNA MER1_type 0 189 2 2145 224 83 12 chrX 135296857 135297353 -27302577 - MLT1H LTR MaLR -6 543 13 372 325 24 16 chrX 135297370 135297493 -27302437 + L2 LINE L2 2926 3049 -223 234 0 0 0 chrX 135297639 135297665 -27302265 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 510 203 0 0 chrX 135297679 135297758 -27302172 - AluJ/FLAM SINE Alu -232 80 2 372 266 0 11 chrX 135297761 135297855 -27302075 + L2 LINE L2 3221 3313 0 1899 170 3 0 chrX 135298228 135298516 -27301414 - AluJb SINE Alu -23 289 1 487 233 50 25 chrX 135298772 135298892 -27301038 + MER20 DNA MER1_type 2 124 -95 282 196 0 0 chrX 135298893 135298939 -27300991 + Alu SINE Alu 236 281 -21 287 188 0 0 chrX 135298947 135298995 -27300935 - AluSp SINE Alu -122 181 134 1441 164 52 34 chrX 135298995 135299263 -27300667 - AluJo SINE Alu -1 311 39 886 160 0 0 chrX 135299265 135299396 -27300534 - AluJo/FLAM SINE Alu -171 131 1 3321 198 22 81 chrX 135299396 135299871 -27300059 + L1M4 LINE L1 342 844 -5698 1720 151 3 69 chrX 135299871 135300190 -27299740 + AluJo SINE Alu 11 308 -4 3321 198 22 81 chrX 135300190 135300334 -27299596 + L1M4 LINE L1 844 902 -5640 1901 154 3 10 chrX 135300334 135300627 -27299303 + AluJb SINE Alu 5 295 -17 3321 198 22 81 chrX 135300627 135300835 -27299095 + L1M4 LINE L1 902 1121 -5421 2361 184 25 7 chrX 135300838 135301336 -27298594 + L1MB7 LINE L1 5274 5782 -402 443 118 0 29 chrX 135301347 135301415 -27298515 + Tigger2 DNA MER2_type 4 69 -2649 * 2569 118 72 42 chrX 135301405 135301765 -27298165 + Tigger2 DNA MER2_type 2273 2621 -97 626 0 14 0 chrX 135301765 135301839 -27298091 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1720 167 0 14 chrX 135301842 135302124 -27297806 - AluJb SINE Alu -34 278 1 2569 118 72 42 chrX 135302124 135302191 -27297739 + Tigger2 DNA MER2_type 2622 2717 -1 1947 202 8 5 chrX 135302191 135302582 -27297348 + L1MB7 LINE L1 5781 6172 -12 2355 118 0 0 chrX 135302582 135302895 -27297035 - AluSq SINE Alu 0 313 1 2371 90 10 3 chrX 135303293 135303603 -27296327 - AluSq SINE Alu -1 312 1 1695 111 22 0 chrX 135303844 135304069 -27295861 - MER30 DNA MER1_type 0 230 1 2975 138 2 14 chrX 135304085 135304520 -27295410 - MSTB1 LTR MaLR 0 432 3 1955 144 0 16 chrX 135304554 135304867 -27295063 + AluJo SINE Alu 5 312 0 278 264 9 27 chrX 135305172 135305282 -27294648 + (TA)n Simple_repeat Simple_repeat 1 108 0 1772 174 3 10 chrX 135305477 135305775 -27294155 - AluJo SINE Alu -16 296 1 24 32 0 0 chrX 135306231 135306262 -27293668 + AT_rich Low_complexity Low_complexity 1 31 0 1888 163 10 0 chrX 135306505 135306799 -27293131 - AluJb SINE Alu -15 297 1 322 283 145 22 chrX 135306868 135307006 -27292924 - MIR3 SINE MIR -23 185 31 465 308 51 15 chrX 135307154 135307349 -27292581 + MIR SINE MIR 17 218 -44 336 24 0 0 chrX 135307873 135307914 -27292016 + (TC)n Simple_repeat Simple_repeat 2 42 0 198 91 0 0 chrX 135307915 135307948 -27291982 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 2260 117 0 0 chrX 135308248 135308548 -27291382 - AluSx SINE Alu -12 300 1 260 232 53 11 chrX 135308986 135309081 -27290849 + (TCTCTG)n Simple_repeat Simple_repeat 4 102 0 3974 132 41 2 chrX 135309895 135310508 -27289422 + L1MB2 LINE L1 5533 6169 -2 1641 172 22 45 chrX 135310516 135310830 -27289100 + AluJo SINE Alu 1 307 -5 2234 104 0 7 chrX 135311000 135311310 -27288620 + AluSq SINE Alu 1 308 0 401 200 0 13 chrX 135311714 135311789 -27288141 + Tigger5 DNA MER2_type 1 74 -2249 * 725 134 0 0 chrX 135311788 135311900 -27288030 + Tigger5 DNA MER2_type 2134 2245 -78 1461 155 20 92 chrX 135311978 135312282 -27287648 - AluJo SINE Alu -30 282 1 870 153 8 0 chrX 135312467 135312598 -27287332 - FLAM_C SINE Alu -11 132 1 244 280 30 10 chrX 135312604 135312704 -27287226 + T-rich Low_complexity Low_complexity 2 103 0 184 208 14 28 chrX 135312715 135312787 -27287143 + CT-rich Low_complexity Low_complexity 2 72 0 2289 281 48 40 chrX 135312876 135313235 -27286695 - HERV16 LTR ERVL -2018 2978 2623 2145 114 3 36 chrX 135313235 135313543 -27286387 + AluSx SINE Alu 1 298 -14 2289 281 48 40 chrX 135313543 135313933 -27285997 - HERV16 LTR ERVL -2373 2623 2223 952 290 23 4 chrX 135313938 135314200 -27285730 - HERV16 LTR ERVL -4271 725 459 500 189 40 34 chrX 135314208 135314356 -27285574 - L1MA9 LINE L1 -5 6307 6159 22 35 0 0 chrX 135314913 135314942 -27284988 + AT_rich Low_complexity Low_complexity 1 29 0 265 319 49 54 chrX 135315242 135315427 -27284503 + L2 LINE L2 2560 2743 -571 1802 222 98 62 chrX 135315428 135315759 -27284171 - MLT1E LTR MaLR -62 531 174 1720 154 10 19 chrX 135315759 135316070 -27283860 - AluJb SINE Alu 0 312 5 1802 222 98 62 chrX 135316070 135316251 -27283679 - MLT1E LTR MaLR -419 174 1 383 267 10 10 chrX 135316428 135316529 -27283401 + MIR3 SINE MIR 102 202 -6 518 247 52 46 chrX 135316579 135316753 -27283177 - MIR SINE MIR 0 262 88 952 207 0 132 chrX 135318031 135318297 -27281633 + MIR SINE MIR 7 237 -25 1714 170 11 0 chrX 135318358 135318634 -27281296 - AluJo SINE Alu -25 287 9 276 309 32 16 chrX 135318658 135318784 -27281146 - MIR SINE MIR -82 180 53 238 282 14 0 chrX 135319269 135319340 -27280590 + MER115 DNA AcHobo 4 75 -618 1026 164 0 0 chrX 135319392 135319551 -27280379 - FRAM SINE Alu -17 159 1 568 246 42 30 chrX 135319551 135319718 -27280212 + MIR SINE MIR 65 233 -29 1452 273 151 10 chrX 135320018 135320535 -27279395 + MLT1G1 LTR MaLR 1 590 -5 491 219 122 16 chrX 135322096 135322219 -27277711 - L2 LINE L2 0 3313 3178 2080 149 140 71 chrX 135322219 135322245 -27277685 + LTR49 LTR ERV1 1 24 -571 1872 167 0 0 chrX 135322245 135322533 -27277397 + AluJb SINE Alu 1 288 -24 2080 149 140 71 chrX 135322533 135322743 -27277187 + LTR49 LTR ERV1 24 218 -377 6139 116 19 3 chrX 135322743 135324392 -27275538 + L1PA15 LINE L1 4481 6165 0 2080 149 140 71 chrX 135324392 135324689 -27275241 + LTR49 LTR ERV1 218 572 -23 2486 256 58 39 chrX 135324705 135325577 -27274353 - L2 LINE L2 -129 3184 2287 3288 102 18 5 chrX 135325577 135326019 -27273911 - MER83 LTR ERV1 0 448 1 2486 256 58 39 chrX 135326019 135326247 -27273683 - L2 LINE L2 -1026 2287 2065 314 300 94 35 chrX 135326417 135326587 -27273343 - MIR3 SINE MIR -6 202 23 196 240 0 60 chrX 135327871 135327921 -27272009 - L2 LINE L2 -12 3260 3214 272 277 20 20 chrX 135327943 135328044 -27271886 - L1MC4 LINE L1 -1340 6702 6602 286 339 97 8 chrX 135328049 135328173 -27271757 - L2 LINE L2 -1122 2192 2058 399 180 36 36 chrX 135328308 135328419 -27271511 - LTR41 LTR ERVL -1 772 662 2006 130 3 17 chrX 135328477 135328778 -27271152 - AluJb SINE Alu -15 297 1 491 263 57 11 chrX 135329271 135329446 -27270484 - LTR41 LTR ERVL -590 183 1 2868 288 50 18 chrX 135329734 135330665 -27269265 - ERVL LTR ERVL -282 5482 4522 2155 136 68 14 chrX 135330673 135331027 -27268903 + Tigger3b DNA MER2_type 1 373 -858 186 43 0 0 chrX 135331038 135331061 -27268869 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 32107 33 0 0 chrX 135331061 135336212 -27263718 - L1PA3 LINE L1 0 6155 1004 17720 41 1 1 chrX 135336212 135339174 -27260756 + L1PA4 LINE L1 3189 6151 -4 1969 139 125 11 chrX 135339228 135339603 -27260327 + Tigger3b DNA MER2_type 812 1229 -2 2380 244 46 13 chrX 135339606 135340209 -27259721 - ERVL LTR ERVL -1250 4514 3892 695 78 0 20 chrX 135340511 135340613 -27259317 + MSTB LTR MaLR 1 100 -326 888 181 12 19 chrX 135340613 135340773 -27259157 - AluJo SINE Alu -138 174 16 756 201 14 64 chrX 135340790 135341009 -27258921 - L1ME LINE L1 -2360 3720 3513 307 140 0 0 chrX 135341010 135341060 -27258870 - MLT2D LTR ERVL 0 414 365 1985 129 31 28 chrX 135341072 135341270 -27258660 - MER7A DNA MER2_type -2693 345 146 2222 140 27 0 chrX 135341270 135341598 -27258332 - MER1B DNA MER1_type 0 337 1 1985 129 31 28 chrX 135341598 135341725 -27258205 - MER7A DNA MER2_type -2892 146 21 22 0 0 0 chrX 135341725 135341747 -27258183 + AT_rich Low_complexity Low_complexity 1 22 0 235 111 19 19 chrX 135341747 135341801 -27258129 + (TA)n Simple_repeat Simple_repeat 2 55 0 303 242 0 63 chrX 135341810 135341905 -27258025 + L1MC4 LINE L1 6615 6703 -1339 2000 205 58 14 chrX 135341958 135342393 -27257537 - MLT2B1 LTR ERVL -66 454 1 356 238 66 25 chrX 135342394 135342516 -27257414 - L1ME LINE L1 -2565 3515 3389 1344 230 89 19 chrX 135342524 135343210 -27256720 - L1ME LINE L1 -3142 2938 2085 1687 195 0 3 chrX 135343218 135343521 -27256409 - AluJb SINE Alu -10 302 1 239 277 0 0 chrX 135343523 135343588 -27256342 - L1ME LINE L1 -5978 92 28 429 278 20 63 chrX 135343630 135343882 -27256048 - L1ME2 LINE L1 -13 6151 5911 5962 61 8 1 chrX 135343980 135344785 -27255145 + L1PA7 LINE L1 5366 6175 0 45 75 0 0 chrX 135345063 135345157 -27254773 + AT_rich Low_complexity Low_complexity 1 94 0 1771 188 10 3 chrX 135345530 135345838 -27254092 + AluJb SINE Alu 1 310 -2 438 331 28 13 chrX 135346106 135346502 -27253428 - L1M4 LINE L1 -1870 4276 3875 1160 108 13 0 chrX 135346561 135346719 -27253211 + AluSx SINE Alu 1 160 -152 452 316 6 29 chrX 135346898 135347069 -27252861 - LTR33 LTR ERVL -354 167 1 336 261 46 48 chrX 135347074 135347294 -27252636 - L1M4 LINE L1 -2277 3869 3624 430 241 98 23 chrX 135347443 135347576 -27252354 - MER5A DNA MER1_type -1 188 46 2146 204 34 0 chrX 135347576 135348041 -27251889 + L1MB5 LINE L1 5683 6163 -11 1764 167 3 7 chrX 135348434 135348727 -27251203 - AluSx SINE Alu -18 294 3 2043 129 3 6 chrX 135349052 135349363 -27250567 - AluSx SINE Alu -2 310 1 201 356 0 14 chrX 135349744 135349817 -27250113 + MIR SINE MIR 11 82 -180 2061 140 0 6 chrX 135350667 135350981 -27248949 - AluSx SINE Alu 0 312 1 944 185 82 82 chrX 135351410 135351549 -27248381 + AluJo SINE Alu 9 147 -165 2161 126 0 0 chrX 135351549 135351843 -27248087 + AluSx SINE Alu 1 294 -18 944 185 82 82 chrX 135351843 135351984 -27247946 + AluJo SINE Alu 146 289 -23 2254 116 3 0 chrX 135352470 135352781 -27247149 - AluSx SINE Alu 0 312 1 2094 153 0 0 chrX 135353587 135353895 -27246035 - AluJb SINE Alu -4 308 1 1143 153 6 0 chrX 135353946 135354116 -27245814 - FRAM SINE Alu -13 163 1 509 242 57 0 chrX 135354120 135354244 -27245686 + L2 LINE L2 3183 3313 0 1337 159 3 102 chrX 135354284 135354618 -27245312 - AluJo SINE Alu -11 301 1 952 193 37 0 chrX 135357339 135357500 -27242430 - FRAM SINE Alu -9 167 1 1373 176 9 0 chrX 135357534 135357750 -27242180 - AluJo SINE Alu -94 218 1 254 285 187 32 chrX 135357783 135357906 -27242024 + MIR SINE MIR 109 250 -12 2248 138 0 12 chrX 135359026 135359367 -27240563 + MER1B DNA MER1_type 1 337 0 1814 161 7 7 chrX 135359420 135359706 -27240224 - AluJo SINE Alu -26 286 1 658 238 116 11 chrX 135359993 135360182 -27239748 + MER63A DNA MER1_type 2 210 0 4353 150 36 72 chrX 135360325 135360660 -27239270 - MER6 DNA MER2_type 0 865 520 2295 102 0 7 chrX 135360660 135360964 -27238966 - AluSx SINE Alu -10 302 1 4353 150 36 72 chrX 135360964 135360977 -27238953 - MER6 DNA MER2_type -345 520 508 1650 172 14 28 chrX 135360977 135361268 -27238662 - AluJo SINE Alu -25 287 1 4353 150 36 72 chrX 135361268 135361813 -27238117 - MER6 DNA MER2_type -357 508 3 1949 74 13 50 chrX 135362253 135362359 -27237571 + L1PB1 LINE L1 5864 5972 -179 2090 128 0 20 chrX 135362359 135362657 -27237273 + AluSx SINE Alu 1 292 -20 1949 74 13 50 chrX 135362657 135362849 -27237081 + L1PB1 LINE L1 5972 6151 0 1164 137 0 0 chrX 135362916 135363084 -27236846 + AluSg/x SINE Alu 137 304 -8 1693 153 7 7 chrX 135363095 135363369 -27236561 + AluJb SINE Alu 1 274 -38 269 50 0 25 chrX 135363369 135363409 -27236521 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1964 110 11 4 chrX 135365998 135366271 -27233659 + AluSx SINE Alu 1 275 -37 367 278 0 28 chrX 135368171 135368279 -27231651 + MIR SINE MIR 91 195 -67 1313 207 68 18 chrX 135368296 135368712 -27231218 - MER110A LTR ERV1 0 468 66 572 190 51 0 chrX 135368693 135368830 -27231100 - MER110A LTR ERV1 -288 180 37 * 2237 168 34 17 chrX 135369256 135369488 -27230442 - MSTB LTR MaLR 0 426 182 1917 167 0 10 chrX 135369488 135369794 -27230136 - AluJb SINE Alu -9 303 1 2237 168 34 17 chrX 135369794 135369978 -27229952 - MSTB LTR MaLR -244 182 3 1639 228 71 36 chrX 135370607 135371149 -27228781 - MLT1F1 LTR MaLR 0 567 7 257 321 60 8 chrX 135371879 135372013 -27227917 + L2 LINE L2 2826 2966 -306 194 289 215 18 chrX 135373603 135373724 -27226206 - MIR SINE MIR -67 141 23 189 0 0 0 chrX 135374236 135374257 -27225673 + (T)n Simple_repeat Simple_repeat 1 21 0 255 280 47 37 chrX 135374723 135374830 -27225100 + L3 LINE CR1 1454 1561 -16 311 222 91 30 chrX 135375642 135375741 -27224189 + MIR3 SINE MIR 73 177 -31 21 36 0 0 chrX 135376345 135376373 -27223557 + AT_rich Low_complexity Low_complexity 1 28 0 2052 122 3 0 chrX 135376373 135376659 -27223271 - AluSx SINE Alu -25 287 1 308 299 51 0 chrX 135377763 135377900 -27222030 - HAL1 LINE L1 -760 1747 1604 275 234 58 29 chrX 135377933 135378070 -27221860 - HAL1 LINE L1 -1231 1276 1136 22 0 0 0 chrX 135379132 135379154 -27220776 + AT_rich Low_complexity Low_complexity 1 22 0 2661 151 11 16 chrX 135379174 135379624 -27220306 - L1PA15 LINE L1 -1 6164 5717 28202 121 14 49 chrX 135379706 135386090 -27213840 - L1PA8 LINE L1 -15 6157 1 1268 197 133 23 chrX 135386492 135386801 -27213129 + MER2 DNA MER2_type 1 343 -1 25 90 0 0 chrX 135386949 135387016 -27212914 + AT_rich Low_complexity Low_complexity 1 67 0 355 303 176 32 chrX 135388072 135388293 -27211637 - MIR SINE MIR 0 262 10 3503 243 71 16 chrX 135388382 135388481 -27211449 + L1MCa LINE L1 2248 2340 -4086 2073 142 3 16 chrX 135388481 135388792 -27211138 + AluSx SINE Alu 1 307 -5 3503 243 71 16 chrX 135388792 135389429 -27210501 + L1MCa LINE L1 2340 2940 -3486 2421 67 0 14 chrX 135389429 135389726 -27210204 + AluY SINE Alu 17 309 -2 207 0 0 0 chrX 135389726 135389749 -27210181 + (TA)n Simple_repeat Simple_repeat 1 23 0 3503 243 71 16 chrX 135389749 135390297 -27209633 + L1MCa LINE L1 2939 3605 -2821 1202 50 0 0 chrX 135390371 135390512 -27209418 + L1PA8 LINE L1 6030 6170 -2 1444 204 63 45 chrX 135391598 135391976 -27207954 + MLT1B LTR MaLR 1 385 -5 2203 141 0 0 chrX 135394029 135394333 -27205597 - AluSx SINE Alu -3 309 6 247 226 75 21 chrX 135394480 135394573 -27205357 - MLT1K LTR MaLR 0 588 491 284 278 26 82 chrX 135395830 135396024 -27203906 - MLT1J LTR MaLR -39 472 290 235 319 65 7 chrX 135396128 135396266 -27203664 - MLT1L LTR MaLR -117 498 353 800 230 94 0 chrX 135396615 135396806 -27203124 - MER3 DNA MER1_type 0 209 1 21 0 0 0 chrX 135396979 135397000 -27202930 + AT_rich Low_complexity Low_complexity 1 21 0 257 256 64 0 chrX 135398258 135398336 -27201594 + MIR3 SINE MIR 76 158 -50 2581 47 0 0 chrX 135398748 135399045 -27200885 + AluY SINE Alu 1 297 -14 1251 227 128 32 chrX 135399359 135399638 -27200292 - MER110A LTR ERV1 -4 464 153 2160 177 3 21 chrX 135399638 135400010 -27199920 - MLT1A1 LTR MaLR 0 365 1 1251 227 128 32 chrX 135400010 135400170 -27199760 - MER110A LTR ERV1 -315 153 10 188 361 0 0 chrX 135400285 135400346 -27199584 - L2 LINE L2 -204 3068 3008 252 59 0 0 chrX 135400927 135400961 -27198969 + (TC)n Simple_repeat Simple_repeat 1 34 0 8240 105 114 88 chrX 135401746 135403399 -27196531 - pTR5 LTR ERV1 0 2438 743 1587 163 87 7 chrX 135403681 135403969 -27195961 - AluJb SINE Alu 0 312 2 30350 121 11 61 chrX 135404933 135411436 -27188494 + L1PA8 LINE L1 1 6168 -4 1423 139 180 8 chrX 135411472 135411717 -27188213 - AluSg SINE Alu -13 287 1 800 192 73 13 chrX 135412721 135412872 -27187058 - FRAM SINE Alu -16 160 1 823 284 92 45 chrX 135414839 135415380 -27184550 + L2 LINE L2 1031 1545 -1768 297 68 0 0 chrX 135415380 135415424 -27184506 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 2093 138 0 7 chrX 135415425 135415729 -27184201 - AluSx SINE Alu -10 302 1 823 284 92 45 chrX 135415729 135415930 -27184000 + L2 LINE L2 1544 3313 0 1026 165 11 130 chrX 135422379 135422640 -27177290 - AluJo SINE Alu -34 278 49 586 237 124 12 chrX 135422656 135422825 -27177105 + MER5A DNA MER1_type 1 188 -1 1686 213 63 63 chrX 135424524 135424924 -27175006 - MLT1D LTR MaLR 0 505 103 1546 175 75 0 chrX 135424924 135425079 -27174851 - AluJo SINE Alu -24 288 146 258 32 0 0 chrX 135425079 135425110 -27174820 + (TG)n Simple_repeat Simple_repeat 2 32 0 1546 175 75 0 chrX 135425110 135425222 -27174708 - AluJo SINE Alu -166 146 1 1686 213 63 63 chrX 135425222 135425315 -27174615 - MLT1D LTR MaLR -401 104 12 284 280 127 67 chrX 135425319 135425633 -27174297 + ERVL LTR ERVL 5146 5478 -286 576 257 33 6 chrX 135425911 135426094 -27173836 + LTR41 LTR ERVL 1 188 -585 327 193 206 115 chrX 135426567 135426695 -27173235 + LTR41 LTR ERVL 509 624 -149 4063 114 85 2 chrX 135426695 135427298 -27172632 + MER39B LTR ERV1 1 653 0 327 193 206 115 chrX 135427298 135427412 -27172518 + LTR41 LTR ERVL 624 773 0 2160 176 81 9 chrX 135427997 135428035 -27171895 - MLT2C2 LTR ERVL 0 464 430 288 0 0 0 chrX 135428035 135428067 -27171863 + (TG)n Simple_repeat Simple_repeat 2 33 0 2160 176 81 9 chrX 135428067 135428113 -27171817 - MLT2C2 LTR ERVL -34 430 389 2925 154 62 24 chrX 135428113 135428245 -27171685 + MLT2B1 LTR ERVL 1 127 -393 2177 135 0 0 chrX 135428245 135428541 -27171389 + AluSx SINE Alu 1 296 -16 2925 154 62 24 chrX 135428541 135428864 -27171066 + MLT2B1 LTR ERVL 127 479 -41 514 41 27 0 chrX 135428864 135428937 -27170993 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2925 154 62 24 chrX 135428937 135428981 -27170949 + MLT2B1 LTR ERVL 479 520 0 2160 176 81 9 chrX 135428981 135429328 -27170602 - MLT2C2 LTR ERVL -75 389 1 318 167 0 0 chrX 135429854 135429914 -27170016 + (TA)n Simple_repeat Simple_repeat 2 61 0 981 221 40 50 chrX 135430019 135430241 -27169689 + MER58A DNA MER1_type 4 223 -1 35788 38 0 2 chrX 135431764 135437920 -27162010 - L1PA4 LINE L1 -5 6150 13 1318 207 90 22 chrX 135438148 135438471 -27161459 + MER2 DNA MER2_type 1 345 0 575 160 14 83 chrX 135439077 135439221 -27160709 + MLT1D LTR MaLR 1 134 -492 765 164 22 0 chrX 135439228 135439362 -27160568 + AluSp/q SINE Alu 177 313 0 195 42 0 0 chrX 135439362 135439386 -27160544 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 2008 176 46 0 chrX 135439392 135439762 -27160168 + MLT1D LTR MaLR 119 505 0 2711 196 29 68 chrX 135439809 135440010 -27159920 + MER92B LTR ERV1 1 208 -428 2396 101 98 18 chrX 135440010 135440406 -27159524 - MSTA LTR MaLR 0 428 1 2711 196 29 68 chrX 135440406 135440615 -27159315 + MER92B LTR ERV1 208 379 -257 2303 100 0 7 chrX 135440615 135440915 -27159015 - AluSx SINE Alu -14 298 1 2711 196 29 68 chrX 135440915 135441152 -27158778 + MER92B LTR ERV1 379 624 -12 186 43 0 0 chrX 135441152 135441175 -27158755 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3544 277 17 20 chrX 135441181 135442286 -27157644 - ERVL LTR ERVL -655 5109 3908 563 249 89 8 chrX 135442309 135442487 -27157443 - LTR41 LTR ERVL -580 215 5 1988 119 37 3 chrX 135442896 135443191 -27156739 - AluSg SINE Alu -5 305 1 1218 148 15 35 chrX 135444632 135444835 -27155095 - AluJb SINE Alu -12 300 102 481 79 45 45 chrX 135444835 135444924 -27155006 + Alu SINE Alu 224 312 0 480 68 0 41 chrX 135444931 135445004 -27154926 + L1MA2 LINE L1 6134 6203 -101 921 253 25 10 chrX 135445392 135445594 -27154336 - MER63A DNA MER1_type 0 210 6 414 303 5 20 chrX 135445934 135446129 -27153801 - L1MC5 LINE L1 -51 7910 7719 588 164 0 39 chrX 135446143 135446247 -27153683 - AluJo/FRAM SINE Alu -22 290 191 1630 129 0 13 chrX 135446248 135446480 -27153450 - AluJb SINE Alu -83 229 1 372 277 58 44 chrX 135448566 135448703 -27151227 + MIR3 SINE MIR 19 157 -51 2044 88 14 0 chrX 135449959 135450242 -27149688 - L1MA2 LINE L1 0 6304 6018 407 281 147 14 chrX 135450808 135451100 -27148830 + L1ME4a LINE L1 5743 6073 -48 2232 92 10 10 chrX 135451804 135451817 -27148113 - AluSx SINE Alu -17 295 283 180 0 0 0 chrX 135451817 135451837 -27148093 + (GA)n Simple_repeat Simple_repeat 1 20 0 2232 92 10 10 chrX 135451837 135452118 -27147812 - AluSx SINE Alu -28 284 1 1998 164 0 0 chrX 135453014 135453326 -27146604 + AluSx SINE Alu 1 312 0 1820 148 36 0 chrX 135453907 135454185 -27145745 + AluJb SINE Alu 1 288 -24 2035 141 3 13 chrX 135456050 135456363 -27143567 - AluJo SINE Alu -2 310 1 234 339 101 16 chrX 135457745 135457934 -27141996 - MIR SINE MIR -44 218 14 2166 98 0 52 chrX 135458025 135458332 -27141598 - AluSx SINE Alu -21 291 1 795 259 81 76 chrX 135458588 135459156 -27140774 - L1ME4a LINE L1 -2 6119 5549 1040 163 0 6 chrX 135459164 135459330 -27140600 - FRAM SINE Alu -1 165 1 314 280 76 8 chrX 135460296 135460414 -27139516 - MER5A DNA MER1_type -46 143 18 278 208 0 14 chrX 135460422 135460494 -27139436 - MIR SINE MIR -56 152 82 1375 173 64 15 chrX 135460855 135461121 -27138809 + L1MD3 LINE L1 7712 7990 -5 1476 123 3 7 chrX 135461396 135461613 -27138317 - MSTB LTR MaLR -1 425 191 411 280 98 10 chrX 135461938 135462131 -27137799 - MIR SINE MIR 0 262 53 318 284 165 16 chrX 135463767 135463894 -27136036 - L2 LINE L2 -2 3270 3125 2182 71 0 0 chrX 135466431 135466699 -27133231 + AluY SINE Alu 38 305 -6 1781 178 27 0 chrX 135466702 135466995 -27132935 - AluJo SINE Alu -11 301 1 3645 118 2 6 chrX 135467020 135467547 -27132383 - L1PA15 LINE L1 -19 6146 5622 428 242 25 8 chrX 135467573 135467693 -27132237 - MER103 DNA DNA -43 123 2 333 0 0 0 chrX 135468083 135468120 -27131810 + (CA)n Simple_repeat Simple_repeat 1 37 0 288 276 23 11 chrX 135468169 135468256 -27131674 + CT-rich Low_complexity Low_complexity 5 92 0 1740 173 21 0 chrX 135468528 135468812 -27131118 + AluJo SINE Alu 1 290 -22 2515 69 0 0 chrX 135468827 135469116 -27130814 + AluSx SINE Alu 5 293 -19 1917 132 14 3 chrX 135469758 135470045 -27129885 + AluSq SINE Alu 1 290 -23 302 276 70 51 chrX 135470404 135470468 -27129462 + MIR SINE MIR 2 63 -199 2665 131 26 5 chrX 135470468 135470887 -27129043 + MSTA LTR MaLR 1 428 0 302 276 70 51 chrX 135470887 135470978 -27128952 + MIR SINE MIR 63 160 -102 2667 126 24 12 chrX 135471572 135471993 -27127937 - MSTB LTR MaLR 0 426 1 2140 91 7 7 chrX 135472246 135472533 -27127397 + AluSx SINE Alu 1 287 -25 189 0 0 0 chrX 135472533 135472554 -27127376 + (GA)n Simple_repeat Simple_repeat 2 22 0 239 279 70 12 chrX 135473313 135473399 -27126531 - MIR SINE MIR -110 152 62 498 49 37 12 chrX 135473618 135473700 -27126230 + (GAAAA)n Simple_repeat Simple_repeat 1 84 0 950 146 4 133 chrX 135474690 135474795 -27125135 - MER3 DNA MER1_type 0 209 151 2429 85 0 19 chrX 135474795 135475114 -27124816 + AluSq SINE Alu 1 313 0 950 146 4 133 chrX 135475114 135475248 -27124682 - MER3 DNA MER1_type -58 151 1 22 0 0 0 chrX 135475644 135475666 -27124264 + AT_rich Low_complexity Low_complexity 1 22 0 459 246 33 83 chrX 135475697 135475937 -27123993 - L2 LINE L2 -3 3310 3083 316 257 19 19 chrX 135476188 135476293 -27123637 - MLT1I LTR MaLR 0 409 305 1744 214 68 29 chrX 135476294 135476524 -27123406 + L1ME3A LINE L1 5669 5888 -282 3094 190 14 33 chrX 135476524 135477160 -27122770 + MLT1E3 LTR MaLR 1 624 0 1744 214 68 29 chrX 135477160 135477411 -27122519 + L1ME3A LINE L1 5888 6169 -1 927 156 0 0 chrX 135477699 135477834 -27122096 + AluJb SINE Alu 1 135 -177 1862 171 0 7 chrX 135477834 135478144 -27121786 + AluJb SINE Alu 1 308 -4 610 294 29 37 chrX 135478279 135478524 -27121406 - MIR SINE MIR 0 262 20 1153 160 176 21 chrX 135479465 135479616 -27120314 - AluJb SINE Alu -24 288 162 207 0 0 0 chrX 135479616 135479639 -27120291 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1153 160 176 21 chrX 135479639 135479725 -27120205 - AluJb SINE Alu -150 162 14 294 333 27 0 chrX 135480996 135481107 -27118823 + MIR SINE MIR 80 193 -69 505 298 94 0 chrX 135481624 135481805 -27118125 + MIR SINE MIR 48 245 -17 2059 133 0 32 chrX 135482668 135482977 -27116953 - AluSx SINE Alu -13 299 1 632 268 6 11 chrX 135483261 135483440 -27116490 - MIR3 SINE MIR -26 182 5 301 328 38 8 chrX 135484085 135484216 -27115714 - MIR SINE MIR -10 252 118 1874 137 0 62 chrX 135484375 135484697 -27115233 - AluJb SINE Alu 0 312 11 209 227 0 0 chrX 135484713 135484757 -27115173 - MIR SINE MIR -66 142 99 2147 123 3 0 chrX 135484873 135485165 -27114765 + AluSx SINE Alu 1 293 -19 442 273 6 77 chrX 135485938 135486121 -27113809 - MIR3 SINE MIR -16 192 23 220 346 0 48 chrX 135487793 135487897 -27112033 - MIR SINE MIR -72 190 92 359 179 61 7 chrX 135488406 135488526 -27111404 + MIR3 SINE MIR 34 166 -42 180 237 151 32 chrX 135488551 135488644 -27111286 - L2 LINE L2 0 3272 3169 192 40 0 0 chrX 135490096 135490121 -27109809 + (CCG)n Simple_repeat Simple_repeat 1 25 0 229 338 0 0 chrX 135491304 135491378 -27108552 + CT-rich Low_complexity Low_complexity 2 75 0 235 226 16 0 chrX 135493082 135493144 -27106786 + (TG)n Simple_repeat Simple_repeat 1 63 0 230 310 0 0 chrX 135493321 135493392 -27106538 + MIR SINE MIR 30 100 -108 300 302 24 16 chrX 135493504 135493630 -27106300 - MIR SINE MIR -115 147 21 180 0 0 0 chrX 135494197 135494217 -27105713 + (GA)n Simple_repeat Simple_repeat 2 21 0 259 352 11 0 chrX 135495981 135496072 -27103858 + MIR3 SINE MIR 88 179 -29 311 279 49 116 chrX 135496848 135497227 -27102703 + L1ME4a LINE L1 5289 5643 -478 395 263 161 0 chrX 135497277 135497395 -27102535 - L2 LINE L2 0 3272 3136 339 277 98 16 chrX 135497467 135497651 -27102279 + L1ME4a LINE L1 5685 5883 -238 36 0 0 0 chrX 135498184 135498220 -27101710 + AT_rich Low_complexity Low_complexity 1 36 0 923 282 80 27 chrX 135499807 135500331 -27099599 + L1M4 LINE L1 2134 2685 -3461 225 94 0 0 chrX 135500331 135500363 -27099567 + (CA)n Simple_repeat Simple_repeat 1 32 0 291 309 60 13 chrX 135500366 135500515 -27099415 + L1M4 LINE L1 2645 2800 -3346 263 194 30 30 chrX 135500736 135500803 -27099127 - MIR SINE MIR -37 225 159 6318 51 8 0 chrX 135500804 135501566 -27098364 - L1PA5 LINE L1 -4 6150 5382 15438 34 4 1 chrX 135501566 135504163 -27095767 - L1PA5 LINE L1 0 6154 3548 5113 209 50 48 chrX 135506813 135507937 -27091993 - L1M4 LINE L1 -705 6290 5170 2278 97 13 0 chrX 135507937 135508236 -27091694 - AluSx SINE Alu -9 303 1 5113 209 50 48 chrX 135508236 135508339 -27091591 - L1M4 LINE L1 -1825 5170 5069 2135 168 84 2 chrX 135508339 135508733 -27091197 + MSTB LTR MaLR 1 426 0 5113 209 50 48 chrX 135508733 135508914 -27091016 - L1M4 LINE L1 -1926 5069 4890 1473 214 11 4 chrX 135508914 135509219 -27090711 - AluJo SINE Alu 0 307 1 5113 209 50 48 chrX 135509219 135509389 -27090541 - L1M4 LINE L1 -2105 4890 4722 1873 171 3 0 chrX 135509389 135509694 -27090236 - AluJo SINE Alu -2 310 5 5113 209 50 48 chrX 135509694 135509845 -27090085 - L1M4 LINE L1 -2273 4722 4553 4788 163 25 3 chrX 135509819 135510704 -27089226 - L1 LINE L1 -1089 5868 4965 * 2093 149 0 3 chrX 135510705 135511028 -27088902 - L1PA15 LINE L1 0 6165 5844 2426 247 38 29 chrX 135511028 135511988 -27087942 - L1M4 LINE L1 -2429 4528 3561 1285 177 0 9 chrX 135511988 135512208 -27087722 + AluJb SINE Alu 75 292 -20 2051 254 51 30 chrX 135512210 135513353 -27086577 - L1M4b LINE L1 -3391 3566 2445 1589 253 54 38 chrX 135513490 135514237 -27085693 - L1M4b LINE L1 -4531 2428 1677 2200 108 0 14 chrX 135514237 135514534 -27085396 - AluSx SINE Alu -19 293 1 1589 253 54 38 chrX 135514534 135514610 -27085320 - L1M4b LINE L1 -5282 1677 1604 360 149 93 0 chrX 135514612 135514773 -27085157 + (TA)n Simple_repeat Simple_repeat 1 176 0 6224 219 64 18 chrX 135514774 135515377 -27084553 - L1M4b LINE L1 -5253 1606 1032 2560 57 0 0 chrX 135515377 135515674 -27084256 - AluY SINE Alu -14 297 1 6224 219 64 18 chrX 135515674 135516574 -27083356 - L1M4b LINE L1 -5827 1032 34 1971 226 6 80 chrX 135516574 135517113 -27082817 - L1MDb LINE L1 -5414 995 497 2031 140 3 13 chrX 135517114 135517422 -27082508 + AluSx SINE Alu 1 305 -7 532 370 43 14 chrX 135517458 135517721 -27082209 - L1MDb LINE L1 -5753 656 399 * 1203 254 14 14 chrX 135517705 135518086 -27081844 - L1MEc LINE L1 -3504 3036 2673 751 209 0 0 chrX 135518101 135518235 -27081695 - FAM SINE Alu -51 134 1 251 259 0 17 chrX 135518266 135518324 -27081606 - L1MEc LINE L1 -6467 73 17 283 301 98 8 chrX 135518733 135518856 -27081074 - L2 LINE L2 0 3272 3139 2412 144 7 48 chrX 135518976 135519172 -27080758 + MSTB LTR MaLR 1 173 -253 2108 112 42 0 chrX 135519172 135519459 -27080471 + AluSx SINE Alu 1 299 -13 2412 144 7 48 chrX 135519459 135519678 -27080252 + MSTB LTR MaLR 173 399 -27 1259 170 35 4 chrX 135519694 135519923 -27080007 - AluJb SINE Alu -2 310 75 622 323 39 23 chrX 135520094 135520481 -27079449 - L2 LINE L2 -493 2821 2429 2158 141 0 0 chrX 135520626 135520938 -27078992 - AluSx SINE Alu 0 312 1 465 278 66 20 chrX 135521556 135521707 -27078223 + MIR SINE MIR 32 189 -73 2304 192 143 14 chrX 135521927 135522478 -27077452 - MER21B LTR ERV1 -3 860 239 925 174 0 0 chrX 135522481 135522630 -27077300 - FRAM SINE Alu -13 163 15 1214 181 9 9 chrX 135522653 135522869 -27077061 - AluJo SINE Alu -92 220 5 1013 198 99 27 chrX 135522875 135523097 -27076833 - MER21B LTR ERV1 -614 249 12 209 289 121 60 chrX 135523798 135523964 -27075966 + MIR SINE MIR 45 220 -42 2684 130 20 43 chrX 135524148 135524493 -27075437 + MER4E LTR ERV1 1 352 -414 2056 139 0 0 chrX 135524493 135524787 -27075143 - AluSx SINE Alu -7 305 12 2684 130 20 43 chrX 135524787 135525054 -27074876 + MER4E LTR ERV1 352 766 0 1507 44 0 39 chrX 135525277 135525458 -27074472 - AluY SINE Alu -137 174 1 610 219 168 0 chrX 135526205 135526360 -27073570 - MER5A DNA MER1_type 0 189 9 404 353 87 8 chrX 135526370 135526636 -27073294 + L2 LINE L2 2463 2749 -565 345 261 34 34 chrX 135529459 135529578 -27070352 + MIR SINE MIR 28 146 -116 271 277 35 43 chrX 135529814 135529955 -27069975 + MARNA DNA Mariner 73 212 -374 2057 124 24 3 chrX 135529972 135530262 -27069668 - AluSx SINE Alu -16 296 1 225 204 0 0 chrX 135530337 135530386 -27069544 - MIR3 SINE MIR -9 199 151 2065 214 52 63 chrX 135530604 135531156 -27068774 - MLT2B3 LTR ERVL -8 546 1 374 214 21 4 chrX 135531353 135531438 -27068492 - MIR SINE MIR -115 93 5 2282 93 0 20 chrX 135531546 135531846 -27068084 + AluSg SINE Alu 1 294 -16 198 103 0 0 chrX 135531963 135531992 -27067938 + (CAT)n Simple_repeat Simple_repeat 2 30 0 367 266 39 39 chrX 135531997 135532125 -27067805 - MIR SINE MIR -56 152 25 380 291 23 70 chrX 135533856 135534028 -27065902 - LTR27 LTR ERV1 0 1755 1592 2276 201 49 31 chrX 135534038 135534850 -27065080 - LTR27 LTR ERV1 -141 495 7 359 328 38 27 chrX 135535241 135535427 -27064503 - MIR3 SINE MIR 0 208 21 274 234 160 11 chrX 135535481 135535575 -27064355 - MIR SINE MIR -141 121 14 2508 64 3 0 chrX 135535642 135535940 -27063990 + AluY SINE Alu 1 299 -12 384 290 48 28 chrX 135535946 135536091 -27063839 - L2 LINE L2 -255 3058 2911 2406 94 0 0 chrX 135536413 135536711 -27063219 - AluSx SINE Alu -14 298 1 207 0 0 0 chrX 135538564 135538587 -27061343 + (T)n Simple_repeat Simple_repeat 1 23 0 3801 196 49 6 chrX 135538682 135539905 -27060025 - L1MB8 LINE L1 -11 6167 4891 1993 159 55 31 chrX 135540371 135540614 -27059316 - MSTB1 LTR MaLR 0 432 173 2137 95 67 0 chrX 135540614 135540899 -27059031 + AluSx SINE Alu 1 304 -8 1993 159 55 31 chrX 135540899 135541077 -27058853 - MSTB1 LTR MaLR -259 173 1 708 278 82 30 chrX 135541079 135541543 -27058387 + L1ME3A LINE L1 4155 4642 -1504 1172 168 24 34 chrX 135541544 135541752 -27058178 - AluJb SINE Alu -21 291 86 551 136 34 0 chrX 135541814 135541902 -27058028 - AluJo SINE Alu -176 136 46 688 292 59 40 chrX 135541956 135542432 -27057498 + L1ME3A LINE L1 4750 5234 -912 189 0 0 0 chrX 135542492 135542513 -27057417 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 504 254 193 39 chrX 135542531 135542751 -27057179 + L1ME3A LINE L1 5345 5530 -632 1652 148 64 17 chrX 135542751 135543018 -27056912 + AluJo SINE Alu 1 285 -27 243 0 0 0 chrX 135543018 135543045 -27056885 + (CA)n Simple_repeat Simple_repeat 2 28 0 1652 148 64 17 chrX 135543045 135543075 -27056855 + AluJo SINE Alu 285 312 0 504 254 193 39 chrX 135543075 135543399 -27056531 + L1ME3A LINE L1 5530 5965 -197 3170 214 62 23 chrX 135543896 135544825 -27055105 - L1MB8 LINE L1 -1243 4903 3938 425 206 111 0 chrX 135545050 135545176 -27054754 + MER117 DNA MER1_type 1 140 -57 2039 137 0 3 chrX 135545176 135545476 -27054454 + AluJb SINE Alu 1 299 -13 358 284 43 43 chrX 135546072 135546213 -27053717 - L1MEc LINE L1 -4212 2184 2044 1861 254 43 43 chrX 135546245 135546831 -27053099 - MLT1E LTR MaLR -7 586 1 751 228 39 73 chrX 135546840 135547018 -27052912 - L1MEc LINE L1 -4357 2039 1856 765 205 0 0 chrX 135547018 135547145 -27052785 - FLAM_C SINE Alu -6 127 1 751 228 39 73 chrX 135547145 135547348 -27052582 - L1MEc LINE L1 -4540 1856 1671 413 351 110 5 chrX 135547355 135547546 -27052384 + L1M4 LINE L1 4151 4361 -1785 3051 278 66 19 chrX 135547583 135549095 -27050835 - L1MEc LINE L1 -4613 1602 22 234 0 0 0 chrX 135549171 135549197 -27050733 + (TA)n Simple_repeat Simple_repeat 1 26 0 2334 110 9 9 chrX 135549326 135549663 -27050267 - MER1B DNA MER1_type 0 337 1 951 241 25 17 chrX 135549965 135550206 -27049724 - MIR SINE MIR 0 262 20 2961 91 2 16 chrX 135550848 135551089 -27048841 - L1MA1 LINE L1 0 6302 6068 2323 93 0 3 chrX 135551089 135551390 -27048540 - AluY SINE Alu -11 300 1 2961 91 2 16 chrX 135551390 135551590 -27048340 - L1MA1 LINE L1 -234 6068 5867 191 111 0 28 chrX 135552092 135552128 -27047802 + (TA)n Simple_repeat Simple_repeat 2 36 0 2268 103 3 0 chrX 135552743 135553034 -27046896 + AluSx SINE Alu 1 292 -20 562 13 13 13 chrX 135553034 135553110 -27046820 + (CATAA)n Simple_repeat Simple_repeat 2 77 0 2112 117 3 0 chrX 135553138 135553420 -27046510 + AluSq SINE Alu 1 283 -30 217 276 13 26 chrX 135554324 135554400 -27045530 - MIR SINE MIR -141 121 47 1044 160 76 141 chrX 135554485 135554751 -27045179 - MER2 DNA MER2_type 0 344 107 2194 124 0 0 chrX 135554751 135555042 -27044888 - AluSx SINE Alu -21 291 1 1044 160 76 141 chrX 135555042 135555143 -27044787 - MER2 DNA MER2_type -237 107 1 204 172 273 20 chrX 135555150 135555249 -27044681 + MER5A DNA MER1_type 43 166 -23 * 451 183 23 0 chrX 135555174 135555280 -27044650 - MER5A DNA MER1_type -77 112 4 6192 34 0 0 chrX 135555461 135556194 -27043736 + L1PA3 LINE L1 5423 6155 0 630 50 0 0 chrX 135557113 135557193 -27042737 + MADE1 DNA Mariner 1 80 0 758 225 19 101 chrX 135557225 135557492 -27042438 + MIR SINE MIR 18 262 0 960 161 85 0 chrX 135557601 135557812 -27042118 - L1 LINE L1 -1317 4829 4601 585 247 66 57 chrX 135558453 135558680 -27041250 + MIR SINE MIR 2 230 -32 219 146 0 0 chrX 135558686 135558727 -27041203 + (CA)n Simple_repeat Simple_repeat 2 42 0 3240 197 39 57 chrX 135558728 135558775 -27041155 - L1MB7 LINE L1 -12 6172 6126 1809 155 4 4 chrX 135558775 135559053 -27040877 + AluJb SINE Alu 1 278 -34 2650 86 19 11 chrX 135559053 135559412 -27040518 + THE1B LTR MaLR 3 364 0 3240 197 39 57 chrX 135559412 135560299 -27039631 - L1MB7 LINE L1 -56 6128 5254 1476 240 88 51 chrX 135560319 135560433 -27039497 - L1M4c LINE L1 -4684 1962 1854 2305 102 3 0 chrX 135560433 135560726 -27039204 - AluSx SINE Alu -18 294 1 1476 240 88 51 chrX 135560726 135561639 -27038291 - L1M4c LINE L1 -4792 1854 942 225 119 0 0 chrX 135561639 135561681 -27038249 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1476 240 88 51 chrX 135561681 135561752 -27038178 - L1M4c LINE L1 -5704 942 875 768 235 10 10 chrX 135562170 135562366 -27037564 - L1MB7 LINE L1 -16 6168 5973 911 191 15 0 chrX 135562369 135562573 -27037357 - L1MB7 LINE L1 -338 5846 5640 25 51 0 0 chrX 135562579 135562618 -27037312 + AT_rich Low_complexity Low_complexity 1 39 0 4777 114 21 0 chrX 135563329 135564033 -27035897 - LTR62 LTR ERVK 0 719 1 193 237 0 0 chrX 135564038 135564076 -27035854 + L2 LINE L2 3265 3302 -11 17106 39 5 0 chrX 135564080 135566951 -27032979 + L1PA5 LINE L1 3281 6154 0 2122 119 37 0 chrX 135567031 135567325 -27032605 - AluSx SINE Alu -7 305 1 225 272 39 58 chrX 135567491 135567594 -27032336 + L3 LINE CR1 1446 1546 -31 285 326 70 23 chrX 135567755 135567884 -27032046 + L2 LINE L2 3138 3272 0 2074 132 64 7 chrX 135569084 135569508 -27030422 + MER61C LTR ERV1 1 434 0 279 313 79 41 chrX 135570016 135570220 -27029710 + MIR SINE MIR 13 216 -46 392 267 92 8 chrX 135570270 135570390 -27029540 + MIR SINE MIR 124 253 -9 192 343 82 0 chrX 135571218 135571291 -27028639 + MIR SINE MIR 39 117 -91 2281 110 0 0 chrX 135572975 135573283 -27026647 - AluSc SINE Alu -1 308 1 204 40 0 0 chrX 135573854 135573879 -27026051 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 219 343 86 0 chrX 135573957 135574027 -27025903 + L2 LINE L2 3147 3222 -50 454 274 59 7 chrX 135575049 135575202 -27024728 + MIR3 SINE MIR 33 193 -15 28412 97 7 14 chrX 135575635 135579936 -27019994 - L1PA7 LINE L1 0 7592 2531 15873 29 0 1 chrX 135579936 135582602 -27017328 + L1PA3 LINE L1 3490 6155 0 28412 97 7 14 chrX 135582602 135583684 -27016246 - L1PA7 LINE L1 -5061 2531 1443 1688 171 0 14 chrX 135583955 135584241 -27015689 + AluJo SINE Alu 1 282 -30 280 234 65 13 chrX 135584754 135584831 -27015099 - MIR SINE MIR -21 241 161 800 199 10 20 chrX 135584831 135585027 -27014903 + MER3 DNA MER1_type 6 199 -10 415 299 0 26 chrX 135585029 135585146 -27014784 - MIR SINE MIR -95 167 54 231 253 13 25 chrX 135585279 135585358 -27014572 + L1P LINE L1 4736 4813 -1333 225 343 57 21 chrX 135585834 135586166 -27013764 + L1ME4a LINE L1 5321 5664 -457 318 312 59 28 chrX 135586279 135586488 -27013442 + L1ME4a LINE L1 5732 5956 -165 2211 112 6 16 chrX 135586488 135586801 -27013129 + AluSx SINE Alu 1 310 -2 318 312 59 28 chrX 135586801 135586915 -27013015 + L1ME4a LINE L1 5956 6065 -56 190 288 41 27 chrX 135587455 135587528 -27012402 + L2 LINE L2 3197 3270 -2 799 182 10 13 chrX 135587634 135587940 -27011990 + CT-rich Low_complexity Low_complexity 1 305 0 232 273 36 0 chrX 135587944 135587999 -27011931 + polypyrimidine Low_complexity Low_complexity 2 58 0 348 278 127 23 chrX 135588379 135588552 -27011378 + L3 LINE CR1 1231 1421 -156 856 254 0 67 chrX 135588553 135588762 -27011168 + MER91A DNA MER1_type 1 195 -1 321 192 173 29 chrX 135589741 135589845 -27010085 - L2 LINE L2 -5 3308 3190 239 244 65 41 chrX 135589838 135589961 -27009969 + MIR3 SINE MIR 54 179 -29 * 2523 77 0 0 chrX 135590065 135590375 -27009555 - AluSg SINE Alu 0 310 1 1900 133 91 7 chrX 135591130 135591438 -27008492 - MER44D DNA MER2_type -2 607 4 424 298 8 24 chrX 135592057 135592181 -27007749 - L2 LINE L2 -2 3311 3190 476 276 47 41 chrX 135592185 135592355 -27007575 + MIR SINE MIR 91 261 -1 23 0 0 0 chrX 135592929 135592952 -27006978 + AT_rich Low_complexity Low_complexity 1 23 0 185 343 98 29 chrX 135593112 135593214 -27006716 - MIR SINE MIR -67 141 33 1596 157 50 43 chrX 135593525 135593825 -27006105 - AluJb SINE Alu -10 302 1 1820 144 0 23 chrX 135594124 135594429 -27005501 + AluJo SINE Alu 5 302 -10 1807 161 7 10 chrX 135595421 135595720 -27004210 - AluJo SINE Alu -14 298 1 674 195 31 38 chrX 135595771 135595930 -27004000 - MER106B DNA MER1_type -901 158 1 256 240 158 10 chrX 135596041 135596188 -27003742 - MIR SINE MIR -17 245 31 210 163 0 23 chrX 135596810 135596853 -27003077 + (TG)n Simple_repeat Simple_repeat 2 43 0 453 267 69 0 chrX 135597606 135597722 -27002208 + MIR3 SINE MIR 81 204 -4 638 282 147 101 chrX 135599492 135600115 -26999815 - L3 LINE CR1 -11 1566 894 1190 172 4 64 chrX 135600115 135600348 -26999582 + MER20 DNA MER1_type 1 219 0 638 282 147 101 chrX 135600348 135600549 -26999381 - L3 LINE CR1 -683 894 704 1216 182 82 38 chrX 135601375 135601666 -26998264 + MER58B DNA MER1_type 38 341 0 51 58 0 0 chrX 135602440 135602526 -26997404 + AT_rich Low_complexity Low_complexity 1 86 0 933 311 77 38 chrX 135603541 135604011 -26995919 - L3 LINE CR1 -178 1399 912 219 348 8 17 chrX 135606947 135607065 -26992865 - MIR SINE MIR -6 256 140 255 210 30 20 chrX 135607092 135607192 -26992738 + GA-rich Low_complexity Low_complexity 4 104 0 2195 130 3 0 chrX 135607443 135607744 -26992186 - AluSx SINE Alu -10 302 1 5368 129 10 16 chrX 135607871 135608242 -26991688 - L1PB4 LINE L1 0 6156 5784 450 94 0 0 chrX 135608242 135608306 -26991624 + (TA)n Simple_repeat Simple_repeat 1 64 0 5368 129 10 16 chrX 135608306 135608796 -26991134 - L1PB4 LINE L1 -372 5784 5300 252 0 0 0 chrX 135610218 135610246 -26989684 + (CA)n Simple_repeat Simple_repeat 2 29 0 384 271 56 9 chrX 135611290 135611397 -26988533 + L2 LINE L2 3146 3257 -15 2066 78 4 0 chrX 135611670 135611927 -26988003 - AluSx SINE Alu -37 275 18 338 313 135 16 chrX 135613178 135613370 -26986560 + MIR SINE MIR 34 248 -14 322 197 26 13 chrX 135613518 135613594 -26986336 + MIR SINE MIR 79 155 -107 902 53 0 18 chrX 135613698 135613812 -26986118 + L1PA3 LINE L1 6044 6155 0 1251 201 21 18 chrX 135614494 135614778 -26985152 + L1MB8 LINE L1 5889 6173 -5 24 67 0 0 chrX 135615025 135615070 -26984860 + AT_rich Low_complexity Low_complexity 1 45 0 256 381 0 0 chrX 135616184 135616289 -26983641 - MIR3 SINE MIR -33 175 71 550 273 4 11 chrX 135617821 135617975 -26981955 - L1MC/D LINE L1 -441 5680 5544 416 221 39 10 chrX 135618039 135618143 -26981787 - L1ME3 LINE L1 0 6162 6056 216 86 0 0 chrX 135618167 135618202 -26981728 + (CATA)n Simple_repeat Simple_repeat 2 36 0 209 211 26 44 chrX 135618222 135618336 -26981594 + (TA)n Simple_repeat Simple_repeat 2 113 0 236 151 96 27 chrX 135618359 135618432 -26981498 - LTR66 LTR ERVL -167 443 366 198 169 13 26 chrX 135618657 135618734 -26981196 + (TA)n Simple_repeat Simple_repeat 1 76 0 301 238 0 50 chrX 135618744 135618826 -26981104 - L1MC4 LINE L1 -1337 6705 6627 477 34 0 0 chrX 135618826 135618885 -26981045 + (TG)n Simple_repeat Simple_repeat 2 60 0 301 238 0 50 chrX 135618885 135618903 -26981027 - L1MC4 LINE L1 -1415 6627 6610 270 294 25 42 chrX 135619898 135620017 -26979913 - MIR SINE MIR -35 227 111 239 289 0 0 chrX 135620030 135620082 -26979848 + polypyrimidine Low_complexity Low_complexity 1 52 0 1408 175 40 10 chrX 135620960 135621263 -26978667 - MER33 DNA MER1_type -12 312 1 351 271 16 31 chrX 135621925 135622054 -26977876 - MIR SINE MIR -121 141 15 438 242 39 52 chrX 135622362 135622515 -26977415 - MIR3 SINE MIR -33 175 25 2533 129 5 49 chrX 135623567 135623689 -26976241 + L1PB3 LINE L1 5749 5875 -279 324 0 0 0 chrX 135623689 135623725 -26976205 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1503 145 62 51 chrX 135623729 135624005 -26975925 - AluSx SINE Alu -33 279 1 2533 129 5 49 chrX 135624005 135624302 -26975628 + L1PB3 LINE L1 5878 6154 0 892 215 48 5 chrX 135625361 135625570 -26974360 + MIR SINE MIR 24 241 -21 1985 151 0 0 chrX 135625574 135625865 -26974065 - AluJb SINE Alu -16 296 6 2542 69 0 0 chrX 135626067 135626371 -26973559 + AluY SINE Alu 1 304 -7 486 294 74 31 chrX 135629185 135629348 -26970582 - MIR SINE MIR -80 182 13 687 194 174 0 chrX 135629696 135629851 -26970079 - MIR SINE MIR -68 194 13 238 227 107 27 chrX 135629868 135629943 -26969987 + L2 LINE L2 3229 3309 -4 276 220 106 98 chrX 135631491 135631553 -26968377 - L2 LINE L2 -1 3271 3211 1173 167 5 14 chrX 135631553 135631763 -26968167 - L1MB8 LINE L1 0 6178 5971 276 220 106 98 chrX 135631763 135631832 -26968098 - L2 LINE L2 -61 3211 3139 607 296 49 17 chrX 135631853 135632046 -26967884 - MIR3 SINE MIR -2 206 9 1197 211 12 16 chrX 135632056 135632312 -26967618 + MIR SINE MIR 8 262 0 353 360 84 39 chrX 135632451 135632762 -26967168 - L2 LINE L2 -51 3221 2897 1025 145 24 0 chrX 135632908 135633074 -26966856 + AluSg/x SINE Alu 140 309 -3 250 310 92 4 chrX 135633114 135633258 -26966672 - MIR SINE MIR -76 132 19 2214 82 0 7 chrX 135633335 135633650 -26966280 + AluSg1 SINE Alu 1 313 0 339 341 190 35 chrX 135633729 135634669 -26965261 - L2 LINE L2 -623 2691 1606 3385 141 67 123 chrX 135634921 135635117 -26964813 + L1MB3 LINE L1 5290 5496 -687 2305 89 0 0 chrX 135635117 135635454 -26964476 - AluSg SINE Alu 0 337 1 3385 141 67 123 chrX 135635454 135635853 -26964077 + L1MB3 LINE L1 5496 5815 -368 360 0 0 0 chrX 135635853 135635893 -26964037 + (TA)n Simple_repeat Simple_repeat 2 41 0 3385 141 67 123 chrX 135635893 135636243 -26963687 + L1MB3 LINE L1 5815 6183 0 244 172 0 86 chrX 135636465 135636523 -26963407 - MER5A DNA MER1_type -9 180 128 814 263 118 56 chrX 135636560 135636974 -26962956 - MLT1H LTR MaLR 0 549 110 225 304 22 43 chrX 135637011 135637103 -26962827 - MER5A DNA MER1_type -57 132 43 378 184 0 0 chrX 135637103 135637179 -26962751 + CT-rich Low_complexity Low_complexity 4 79 0 1545 154 38 38 chrX 135637189 135637455 -26962475 - AluJo SINE Alu -46 266 1 288 327 99 0 chrX 135638057 135638158 -26961772 + L2 LINE L2 3158 3268 -4 195 250 1 0 chrX 135638161 135638205 -26961725 - MER5B DNA MER1_type -54 124 92 184 165 47 153 chrX 135638228 135638290 -26961640 - MER5B DNA MER1_type -2 176 124 2133 119 0 13 chrX 135638290 135638600 -26961330 + AluSx SINE Alu 1 306 -6 184 165 47 153 chrX 135638600 135638622 -26961308 - MER5B DNA MER1_type -54 124 101 610 253 56 22 chrX 135640391 135640458 -26959472 + MIR SINE MIR 5 68 -194 454 99 127 0 chrX 135640458 135640529 -26959401 - MADE1 DNA Mariner 0 80 1 610 253 56 22 chrX 135640529 135640639 -26959291 + MIR SINE MIR 68 188 -74 1521 176 17 0 chrX 135640773 135641050 -26958880 + MER58B DNA MER1_type 19 313 -28 221 234 21 0 chrX 135641570 135641617 -26958313 - MIR3 SINE MIR 0 208 161 1779 161 26 23 chrX 135642753 135643057 -26956873 - AluJb SINE Alu -3 309 5 461 283 61 11 chrX 135643652 135643832 -26956098 - MIR SINE MIR 0 262 74 2182 126 0 0 chrX 135643870 135644172 -26955758 + AluSx SINE Alu 1 302 -10 882 91 0 0 chrX 135646271 135646381 -26953549 - AluSg/x SINE Alu -18 291 182 1974 157 51 17 chrX 135646486 135646842 -26953088 - THE1C LTR MaLR 0 375 8 3654 115 55 14 chrX 135647010 135647516 -26952414 - MER1A DNA MER1_type 0 527 1 431 321 59 11 chrX 135647691 135647878 -26952052 - MIR SINE MIR -13 249 54 1851 158 3 31 chrX 135647897 135648214 -26951716 + AluJb SINE Alu 1 308 -4 279 71 74 5 chrX 135648490 135648544 -26951386 + AluJb SINE Alu 69 113 -189 361 322 72 20 chrX 135648569 135648721 -26951209 - L2 LINE L2 -4 3268 3109 252 299 73 73 chrX 135649144 135649348 -26950582 + MIR3 SINE MIR 3 206 -2 2311 104 0 3 chrX 135649550 135649849 -26950081 - AluSx SINE Alu -14 298 1 513 234 101 28 chrX 135651492 135651670 -26948260 - MIR SINE MIR -27 235 48 1745 179 0 10 chrX 135651670 135651966 -26947964 + AluJb SINE Alu 1 293 -19 513 234 101 28 chrX 135651966 135652002 -26947928 - MIR SINE MIR -214 48 16 186 167 62 62 chrX 135652112 135652160 -26947770 + MER5A DNA MER1_type 87 134 -55 936 140 29 12 chrX 135652237 135652408 -26947522 + L1MB5 LINE L1 5823 5996 -178 219 263 81 90 chrX 135652699 135652854 -26947076 + MIR SINE MIR 34 188 -74 1765 176 0 7 chrX 135652854 135652974 -26946956 + AluJb SINE Alu 1 120 -192 270 0 0 0 chrX 135652974 135653004 -26946926 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1765 176 0 7 chrX 135653004 135653184 -26946746 + AluJb SINE Alu 120 299 -13 219 263 81 90 chrX 135653184 135653209 -26946721 + MIR SINE MIR 188 212 -50 206 305 105 29 chrX 135654108 135654213 -26945717 + L2 LINE L2 3133 3245 -27 2424 103 3 0 chrX 135654219 135654530 -26945400 + AluSx SINE Alu 1 312 0 2428 172 32 2 chrX 135654649 135655092 -26944838 + L1MB7 LINE L1 5721 6176 -8 1092 180 0 44 chrX 135655582 135655788 -26944142 - AluJo SINE Alu -16 296 100 1682 143 36 63 chrX 135656418 135656719 -26943211 - AluJo SINE Alu -19 293 1 15937 122 12 16 chrX 135657053 135659458 -26940472 - Tigger1 DNA MER2_type 0 2418 24 2055 110 0 3 chrX 135659676 135659958 -26939972 - AluSx SINE Alu -18 294 14 2250 98 0 3 chrX 135659987 135660274 -26939656 + AluSg SINE Alu 1 286 -24 884 87 27 0 chrX 135660274 135660423 -26939507 + (TA)n Simple_repeat Simple_repeat 2 154 0 2124 104 7 14 chrX 135660657 135660954 -26938976 + AluSq SINE Alu 1 295 -18 303 173 0 0 chrX 135661051 135661103 -26938827 - MADE1 DNA Mariner 0 80 29 913 185 30 20 chrX 135661400 135661632 -26938298 - MIR SINE MIR -2 260 20 229 288 82 14 chrX 135661633 135661706 -26938224 - MIR SINE MIR -115 93 16 507 259 16 111 chrX 135662928 135662982 -26936948 - MER5B DNA MER1_type -6 172 114 1914 122 0 0 chrX 135662982 135663244 -26936686 + AluSx SINE Alu 14 275 -37 249 33 0 0 chrX 135663249 135663279 -26936651 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 507 259 16 111 chrX 135663279 135663407 -26936523 - MER5B DNA MER1_type -68 110 2 351 299 43 85 chrX 135664292 135664503 -26935427 - MIR SINE MIR -10 252 51 291 317 85 25 chrX 135664596 135664795 -26935135 + L2 LINE L2 1776 1986 -1328 432 283 184 37 chrX 135664795 135665258 -26934672 + L2 LINE L2 2170 2700 -614 401 243 72 40 chrX 135665360 135665512 -26934418 - MER103 DNA DNA -7 159 3 2235 121 43 35 chrX 135665657 135666029 -26933901 + THE1C LTR MaLR 1 375 0 266 306 92 48 chrX 135666038 135666267 -26933663 + L2 LINE L2 2845 3083 -189 569 237 23 40 chrX 135666814 135666991 -26932939 - MIR SINE MIR -10 252 79 * 847 276 9 4 chrX 135666980 135667205 -26932725 + MIR SINE MIR 36 261 -1 965 240 13 40 chrX 135667612 135667873 -26932057 + MIR SINE MIR 7 259 -3 2067 94 0 22 chrX 135668895 135669204 -26930726 + AluSg SINE Alu 21 323 0 213 317 0 0 chrX 135669558 135669618 -26930312 + L2 LINE L2 3213 3272 0 2261 95 0 49 chrX 135669832 135670159 -26929771 + AluSx SINE Alu 1 311 -1 242 276 172 35 chrX 135670250 135670366 -26929564 - L2 LINE L2 -3 3310 3179 1080 167 18 59 chrX 135670369 135670591 -26929339 - MER20 DNA MER1_type -6 213 1 2048 135 0 0 chrX 135672598 135672895 -26927035 + AluSx SINE Alu 1 297 -15 435 225 56 0 chrX 135673369 135673458 -26926472 + L2 LINE L2 3194 3287 -26 3836 193 18 7 chrX 135673569 135674286 -26925644 - L1MB7 LINE L1 0 6184 5460 273 105 76 9 chrX 135674318 135674423 -26925507 + (TA)n Simple_repeat Simple_repeat 1 112 0 361 224 48 0 chrX 135674461 135674662 -26925268 + (TA)n Simple_repeat Simple_repeat 1 210 0 371 90 62 62 chrX 135674664 135674841 -26925089 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 242 220 45 40 chrX 135674911 135675088 -26924842 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 340 225 99 21 chrX 135676219 135676361 -26923569 - L1ME4a LINE L1 -3 6118 5966 250 259 0 0 chrX 135676377 135676435 -26923495 - L2 LINE L2 -1 3271 3214 411 236 70 25 chrX 135676544 135676701 -26923229 - L1ME4a LINE L1 -249 5872 5709 282 294 22 0 chrX 135676736 135676828 -26923102 - L1ME4a LINE L1 -503 5618 5525 317 294 42 50 chrX 135677133 135677252 -26922678 - L2 LINE L2 -14 3258 3141 * 581 297 66 42 chrX 135677239 135677488 -26922442 + MIR SINE MIR 8 262 0 272 183 117 0 chrX 135678997 135679057 -26920873 + MIR SINE MIR 120 186 -76 2016 118 4 0 chrX 135679223 135679493 -26920437 - AluSx SINE Alu -10 302 32 641 280 62 29 chrX 135679625 135679868 -26920062 + MIR SINE MIR 6 256 -6 478 121 0 0 chrX 135679881 135679947 -26919983 + AluJo SINE Alu 2 67 -245 1414 164 22 0 chrX 135680123 135680354 -26919576 + AluJo SINE Alu 59 294 -18 749 251 23 41 chrX 135680560 135680779 -26919151 + MIR SINE MIR 34 248 -14 730 158 9 7 chrX 135680894 135681022 -26918908 + MSTA LTR MaLR 319 428 0 197 337 56 22 chrX 135681022 135681111 -26918819 - MIR SINE MIR -90 118 27 542 259 22 32 chrX 135681411 135681596 -26918334 - MER5A DNA MER1_type 0 189 7 663 267 119 5 chrX 135681604 135681814 -26918116 + MIR SINE MIR 29 262 0 1871 160 20 0 chrX 135681828 135682134 -26917796 + AluJo SINE Alu 1 312 0 219 69 0 0 chrX 135682143 135682172 -26917758 + (CA)n Simple_repeat Simple_repeat 2 30 0 205 274 20 0 chrX 135683099 135683150 -26916780 - MIR3 SINE MIR -2 206 155 518 294 29 0 chrX 135683271 135683407 -26916523 + MIR3 SINE MIR 48 187 -21 199 240 10 94 chrX 135684244 135684340 -26915590 - MIR SINE MIR -50 212 125 789 271 78 12 chrX 135684484 135684728 -26915202 - MIR SINE MIR -1 261 2 256 346 77 0 chrX 135685243 135685347 -26914583 - L2 LINE L2 -14 3258 3147 501 241 6 98 chrX 135685518 135685692 -26914238 - MIR SINE MIR 0 262 105 2644 105 16 0 chrX 135686984 135687347 -26912583 - THE1C LTR MaLR -6 369 1 834 226 97 18 chrX 135687533 135687759 -26912171 + MIR SINE MIR 18 261 -1 195 42 0 0 chrX 135687789 135687813 -26912117 + (TTG)n Simple_repeat Simple_repeat 1 24 0 975 177 16 5 chrX 135687893 135688079 -26911851 - L1MB5 LINE L1 0 6174 5987 207 183 0 100 chrX 135689226 135689286 -26910644 - MER5A DNA MER1_type 0 189 136 324 0 0 0 chrX 135690722 135690758 -26909172 + (CA)n Simple_repeat Simple_repeat 2 37 0 238 318 0 0 chrX 135690773 135690861 -26909069 + GA-rich Low_complexity Low_complexity 1 88 0 293 105 53 0 chrX 135691685 135691742 -26908188 - MER96B DNA MER1_type? -48 369 310 645 149 132 16 chrX 135691744 135691865 -26908065 - FAM SINE Alu -20 165 31 307 173 13 0 chrX 135691865 135691940 -26907990 - MER96B DNA MER1_type? -97 320 245 3173 175 91 69 chrX 135692102 135692472 -26907458 + L1MC3 LINE L1 6710 7070 -715 278 241 0 47 chrX 135692472 135692567 -26907363 + MLT1F1 LTR MaLR 42 147 -402 1882 159 7 0 chrX 135692567 135692856 -26907074 + AluJb SINE Alu 1 291 -21 2337 88 3 3 chrX 135692863 135693160 -26906770 + AluY SINE Alu 1 297 -14 3173 175 91 69 chrX 135693160 135693739 -26906191 + L1MC3 LINE L1 7075 7785 0 504 207 0 0 chrX 135693740 135693827 -26906103 - MER96B DNA MER1_type? -330 87 1 2418 96 40 8 chrX 135693880 135694233 -26905697 - THE1B LTR MaLR 0 364 1 2308 118 0 0 chrX 135695085 135695389 -26904541 - AluSx SINE Alu -8 304 1 422 312 124 9 chrX 135695480 135695698 -26904232 + MIR SINE MIR 19 261 -1 186 43 0 0 chrX 135697211 135697234 -26902696 + (T)n Simple_repeat Simple_repeat 1 23 0 187 311 0 16 chrX 135697284 135697345 -26902585 - L2 LINE L2 -4 3268 3209 220 167 0 0 chrX 135698460 135698502 -26901428 - L2 LINE L2 -257 3056 3015 1606 162 0 82 chrX 135698650 135698965 -26900965 + AluJo SINE Alu 1 289 -23 619 262 16 22 chrX 135699853 135700036 -26899894 - MIR3 SINE MIR -1 207 26 496 295 137 13 chrX 135700357 135700584 -26899346 + L2 LINE L2 3012 3266 -6 513 67 0 112 chrX 135701032 135701072 -26898858 + MADE1 DNA Mariner 1 27 -53 2280 40 62 4 chrX 135701072 135701347 -26898583 - AluY SINE Alu -20 291 1 513 67 0 112 chrX 135701347 135701395 -26898535 + MADE1 DNA Mariner 27 79 -1 299 233 165 19 chrX 135701716 135701819 -26898111 + MER5B DNA MER1_type 61 178 0 840 109 7 41 chrX 135702182 135702194 -26897736 + L1PA16 LINE L1 6024 6035 -131 2117 142 3 0 chrX 135702194 135702496 -26897434 + AluSx SINE Alu 1 303 -9 840 109 7 41 chrX 135702496 135702630 -26897300 + L1PA16 LINE L1 6035 6165 -1 590 284 5 30 chrX 135703262 135703459 -26896471 + MIR SINE MIR 63 254 -8 1455 171 3 69 chrX 135703491 135703819 -26896111 + AluJo SINE Alu 1 308 0 420 234 225 34 chrX 135703837 135704046 -26895884 + MIR SINE MIR 13 261 -1 468 244 67 28 chrX 135704267 135704447 -26895483 - L3 LINE CR1 -627 950 764 263 337 124 18 chrX 135705113 135705282 -26894648 + MIR3 SINE MIR 16 202 -6 402 264 70 27 chrX 135705590 135705762 -26894168 - MIR SINE MIR -30 232 48 372 305 22 76 chrX 135705856 135705998 -26893932 - MIR SINE MIR -61 147 33 2032 122 61 7 chrX 135705998 135706294 -26893636 + AluSx SINE Alu 1 312 0 372 305 22 76 chrX 135706294 135706324 -26893606 - MIR SINE MIR -175 33 3 802 289 62 48 chrX 135707260 135707820 -26892110 + L1ME4a LINE L1 5332 5899 -222 2158 116 0 0 chrX 135707849 135708134 -26891796 - AluSx SINE Alu -14 298 14 296 275 56 44 chrX 135708227 135708387 -26891543 - L3 LINE CR1 -2 1575 1414 273 205 86 76 chrX 135708469 135708630 -26891300 - MIR SINE MIR -72 190 29 360 256 50 16 chrX 135710428 135710549 -26889381 + MIR3 SINE MIR 81 205 -3 218 179 0 0 chrX 135710820 135710859 -26889071 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 180 128 0 103 chrX 135711346 135711385 -26888545 - MIR SINE MIR -58 150 116 2124 105 0 18 chrX 135711436 135711748 -26888182 + AluSx SINE Alu 3 309 0 219 303 15 15 chrX 135713521 135713587 -26886343 - MIR SINE MIR -124 84 19 377 280 102 32 chrX 135713613 135713799 -26886131 + MIR SINE MIR 16 214 -48 237 194 0 48 chrX 135714209 135714271 -26885659 - L1MC/D LINE L1 -1893 5915 5857 246 183 197 0 chrX 135714636 135714707 -26885223 - MIR3 SINE MIR -14 194 110 2221 143 34 0 chrX 135714766 135715116 -26884814 - THE1B LTR MaLR -2 362 1 2569 72 0 0 chrX 135715706 135716013 -26883917 - AluY SINE Alu -4 307 1 232 299 205 8 chrX 135716122 135716239 -26883691 + MIR3 SINE MIR 16 155 -53 390 262 87 0 chrX 135716417 135716543 -26883387 + MIR3 SINE MIR 12 148 -60 221 275 128 37 chrX 135717411 135717520 -26882410 + MIR3 SINE MIR 42 160 -48 2249 143 59 11 chrX 135717684 135718154 -26881776 - Charlie1 DNA MER1_type 0 2761 2 214 283 0 0 chrX 135718162 135718222 -26881708 - MER91 DNA MER1_type -79 61 2 3522 159 50 17 chrX 135719298 135719975 -26879955 + L1MB5 LINE L1 5512 6209 0 443 223 71 9 chrX 135720183 135720295 -26879635 + L2 LINE L2 3154 3272 0 1954 156 25 15 chrX 135720681 135721084 -26878846 + L1MB7 LINE L1 5769 6175 -9 24 32 0 0 chrX 135721230 135721261 -26878669 + AT_rich Low_complexity Low_complexity 1 31 0 11249 140 22 17 chrX 135721261 135723403 -26876527 - L1MA2 LINE L1 0 7723 5562 2013 95 21 25 chrX 135723403 135723724 -26876206 - AluY SINE Alu 0 320 1 11249 140 22 17 chrX 135723724 135724723 -26875207 - L1MA2 LINE L1 -2161 5562 4569 647 178 11 63 chrX 135725238 135725366 -26874564 - L1MA2 LINE L1 -2939 4626 4510 2669 49 0 0 chrX 135725366 135725672 -26874258 - AluY SINE Alu -5 306 1 647 178 11 63 chrX 135725672 135725734 -26874196 - L1MA2 LINE L1 -3055 4510 4446 242 307 108 27 chrX 135725752 135726048 -26873882 + L1M4 LINE L1 3706 4025 -2121 4170 194 3 11 chrX 135726092 135727061 -26872869 - L1MA2 LINE L1 -3101 4464 3502 302 256 85 23 chrX 135727954 135728083 -26871847 + MIR SINE MIR 12 148 -114 370 293 127 27 chrX 135728248 135728398 -26871532 + MIR3 SINE MIR 30 194 -14 207 0 0 0 chrX 135728690 135728713 -26871217 + (GA)n Simple_repeat Simple_repeat 2 24 0 438 265 92 5 chrX 135729119 135729281 -26870649 + MIR SINE MIR 30 200 -60 372 271 241 10 chrX 135729284 135729491 -26870439 + MIR SINE MIR 3 257 -5 220 229 0 0 chrX 135731138 135731186 -26868744 + T-rich Low_complexity Low_complexity 3 50 0 1898 159 7 3 chrX 135732124 135732426 -26867504 - AluJo SINE Alu -9 303 1 424 278 5 73 chrX 135732936 135732960 -26866970 - MIR3 SINE MIR -2 206 182 2062 112 10 20 chrX 135732960 135733254 -26866676 + AluSx SINE Alu 1 291 -21 424 278 5 73 chrX 135733254 135733434 -26866496 - MIR3 SINE MIR -26 182 16 208 359 0 0 chrX 135734251 135734354 -26865576 - MIR SINE MIR 0 262 160 2195 112 3 0 chrX 135734528 135734831 -26865099 - AluSx SINE Alu -4 308 5 323 310 18 18 chrX 135734835 135734948 -26864982 - MIR SINE MIR -113 149 37 433 301 66 6 chrX 135736006 135736172 -26863758 - MIR3 SINE MIR -2 206 31 392 214 40 71 chrX 135737060 135737186 -26862744 + L2 LINE L2 3187 3308 -5 261 0 0 0 chrX 135737737 135737766 -26862164 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 0 0 0 chrX 135739250 135739279 -26860651 + (T)n Simple_repeat Simple_repeat 1 29 0 344 265 88 10 chrX 135740307 135740409 -26859521 + MIR3 SINE MIR 61 170 -38 365 206 0 0 chrX 135741367 135741440 -26858490 - MIR3 SINE MIR -7 201 129 800 245 58 29 chrX 135741788 135742029 -26857901 + MIR SINE MIR 13 260 -2 580 307 56 44 chrX 135742163 135742355 -26857575 + L2 LINE L2 1876 2064 -1250 273 57 0 0 chrX 135742355 135742390 -26857540 + (CA)n Simple_repeat Simple_repeat 1 35 0 580 307 56 44 chrX 135742390 135742627 -26857303 + L2 LINE L2 2064 2310 -1004 186 43 0 0 chrX 135742998 135743021 -26856909 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2082 110 4 0 chrX 135743033 135743306 -26856624 - AluSq SINE Alu -39 274 1 241 275 138 37 chrX 135743531 135743640 -26856290 - L2 LINE L2 -1 3312 3193 651 291 123 4 chrX 135744650 135744758 -26855172 - L2 LINE L2 0 3313 3219 180 0 0 0 chrX 135744758 135744778 -26855152 + (TG)n Simple_repeat Simple_repeat 2 21 0 651 291 123 4 chrX 135744778 135744930 -26855000 - L2 LINE L2 -94 3219 3022 305 330 28 0 chrX 135746367 135746476 -26853454 - MIR SINE MIR -67 141 30 180 0 0 0 chrX 135747025 135747045 -26852885 + (TA)n Simple_repeat Simple_repeat 2 21 0 567 281 46 32 chrX 135748623 135748840 -26851090 - L2 LINE L2 0 3313 3094 480 233 20 20 chrX 135748851 135748997 -26850933 - MARNA DNA Mariner -202 384 239 327 298 67 0 chrX 135749714 135749818 -26850112 - L2 LINE L2 -25 3247 3137 209 210 32 32 chrX 135750980 135751042 -26848888 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 530 215 42 84 chrX 135751043 135751234 -26848696 + MIR3 SINE MIR 2 184 -24 204 317 0 0 chrX 135751268 135751328 -26848602 + (CAGG)n Simple_repeat Simple_repeat 2 61 0 2199 273 63 10 chrX 135752499 135753263 -26846667 + L2 LINE L2 2228 3030 -283 336 353 51 57 chrX 135754626 135754997 -26844933 - L2 LINE L2 -6 3266 2898 283 307 66 22 chrX 135756302 135756439 -26843491 - MIR3 SINE MIR -21 187 45 1308 199 125 42 chrX 135757264 135757575 -26842355 + MER58B DNA MER1_type 1 337 -4 1534 112 28 0 chrX 135757586 135757801 -26842129 + MER30 DNA MER1_type 10 230 0 3152 72 0 3 chrX 135758827 135759203 -26840727 + THE1C LTR MaLR 1 375 0 2305 91 3 0 chrX 135759530 135759826 -26840104 + AluSq SINE Alu 1 297 -16 279 231 62 0 chrX 135760175 135760240 -26839690 - MARNA DNA Mariner -24 562 494 24 0 0 0 chrX 135760802 135760826 -26839104 + AT_rich Low_complexity Low_complexity 1 24 0 1222 271 117 21 chrX 135761621 135762133 -26837797 - MARNA DNA Mariner -18 568 8 282 116 0 0 chrX 135763235 135763278 -26836652 + (TA)n Simple_repeat Simple_repeat 1 43 0 243 152 0 0 chrX 135763282 135763328 -26836602 + LTR66 LTR ERVL 394 439 -171 240 35 0 0 chrX 135763335 135763364 -26836566 + (TA)n Simple_repeat Simple_repeat 2 30 0 234 0 0 0 chrX 135764441 135764467 -26835463 + (ATTG)n Simple_repeat Simple_repeat 4 29 0 1654 160 0 28 chrX 135764467 135764755 -26835175 - AluJo SINE Alu -32 280 1 847 146 0 7 chrX 135765939 135766076 -26833854 - AluJb SINE Alu -176 136 1 2220 92 3 29 chrX 135766558 135766864 -26833066 - AluSq SINE Alu -15 298 1 440 245 93 68 chrX 135767009 135767246 -26832684 + L2 LINE L2 2149 2391 -923 8839 72 3 8 chrX 135767263 135768340 -26831590 + MER11C LTR ERVK 1 1071 0 1742 177 3 10 chrX 135769219 135769507 -26830423 - AluJo SINE Alu -26 286 1 853 240 34 0 chrX 135770800 135770979 -26828951 + MER5A DNA MER1_type 1 185 -4 261 319 31 126 chrX 135771124 135771378 -26828552 + L2 LINE L2 3043 3272 0 221 298 255 11 chrX 135773192 135773286 -26826644 - MIR3 SINE MIR -52 156 40 390 324 19 0 chrX 135774191 135774299 -26825631 - MER117 DNA MER1_type 0 197 88 2181 92 0 47 chrX 135776744 135777061 -26822869 - AluSg SINE Alu -8 302 1 198 0 0 0 chrX 135778232 135778254 -26821676 + (GA)n Simple_repeat Simple_repeat 1 22 0 294 273 11 23 chrX 135778539 135778627 -26821303 - L2 LINE L2 0 3272 3186 428 306 29 24 chrX 135780919 135781089 -26818841 - MIR SINE MIR 0 262 92 280 306 99 18 chrX 135781163 135781274 -26818656 - L2 LINE L2 -16 3256 3137 316 303 15 38 chrX 135782117 135782249 -26817681 - MIR SINE MIR -64 144 16 2262 110 3 0 chrX 135783270 135783571 -26816359 + AluY SINE Alu 1 302 -9 250 216 0 0 chrX 135783777 135783828 -26816102 + (TG)n Simple_repeat Simple_repeat 2 52 0 421 254 17 39 chrX 135784416 135784591 -26815339 + MIR SINE MIR 20 261 -1 189 107 0 0 chrX 135785284 135785312 -26814618 + (TC)n Simple_repeat Simple_repeat 1 28 0 2827 203 46 39 chrX 135785394 135785581 -26814349 - L1M4 LINE L1 -1253 4893 4709 1261 153 280 4 chrX 135785581 135785817 -26814113 - AluJo SINE Alu -1 301 1 2827 203 46 39 chrX 135785817 135786410 -26813520 - L1M4 LINE L1 -1432 4714 4107 2259 127 26 32 chrX 135786410 135786787 -26813143 + THE1C LTR MaLR 1 375 0 477 311 120 0 chrX 135787149 135787316 -26812614 + MIR SINE MIR 3 189 -73 650 268 87 28 chrX 135787318 135787605 -26812325 - L2 LINE L2 -1 3312 3009 184 296 0 0 chrX 135787610 135787664 -26812266 + MIR SINE MIR 183 236 -26 530 292 124 6 chrX 135787689 135787867 -26812063 - MIR SINE MIR -13 249 51 457 300 23 31 chrX 135788845 135789017 -26810913 - MIR SINE MIR -64 198 30 493 200 0 36 chrX 135789212 135789322 -26810608 - MIR SINE MIR 0 262 157 706 38 0 0 chrX 135789759 135789839 -26810091 + MADE1 DNA Mariner 1 80 0 197 301 97 39 chrX 135790410 135790513 -26809417 - L2 LINE L2 -21 3251 3143 1461 152 82 0 chrX 135790875 135791118 -26808812 + L1PB3 LINE L1 5890 6152 -2 23 0 0 0 chrX 135791118 135791141 -26808789 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrX 135791790 135791814 -26808116 + AT_rich Low_complexity Low_complexity 1 24 0 430 188 47 0 chrX 135792054 135792139 -26807791 + MIR SINE MIR 77 165 -97 242 284 0 0 chrX 135792366 135792433 -26807497 - L2 LINE L2 0 3313 3247 1444 206 26 53 chrX 135793248 135793649 -26806281 - L1ME3 LINE L1 -4 6284 5942 368 307 36 15 chrX 135793914 135794051 -26805879 + MIR3 SINE MIR 33 172 -36 1562 178 38 17 chrX 135796512 135796804 -26803126 + AluJo SINE Alu 1 298 -14 279 0 0 0 chrX 135796806 135796837 -26803093 + (GA)n Simple_repeat Simple_repeat 2 32 0 458 256 199 38 chrX 135797586 135797706 -26802224 + MIR SINE MIR 15 114 -148 2328 104 0 0 chrX 135797706 135798003 -26801927 - AluSx SINE Alu -15 297 1 458 256 199 38 chrX 135798003 135798093 -26801837 + MIR SINE MIR 114 259 -3 775 265 80 32 chrX 135799471 135799720 -26800210 - MIR SINE MIR 0 262 2 2861 105 6 0 chrX 135800493 135800855 -26799075 + THE1B LTR MaLR 1 364 0 1040 171 0 12 chrX 135801021 135801191 -26798739 - AluJb SINE Alu -8 304 137 192 191 24 24 chrX 135801192 135801234 -26798696 - L3 LINE CR1 -25 1552 1511 247 282 137 46 chrX 135801492 135801623 -26798307 + MIR SINE MIR 1 143 -119 527 319 2 15 chrX 135803067 135803238 -26796692 + MIR SINE MIR 20 183 -63 488 237 7 0 chrX 135803294 135803446 -26796484 + CT-rich Low_complexity Low_complexity 2 154 0 422 305 63 29 chrX 135803905 135804079 -26795851 + MIR3 SINE MIR 18 197 -11 562 194 144 7 chrX 135805903 135806042 -26793888 - MIR SINE MIR -73 189 32 1829 130 28 46 chrX 135806071 135806133 -26793797 + L1PA16 LINE L1 5847 5909 -257 2231 119 0 10 chrX 135806133 135806443 -26793487 + AluSx SINE Alu 2 308 -4 1829 130 28 46 chrX 135806443 135806704 -26793226 + L1PA16 LINE L1 5909 6164 -2 1479 151 57 22 chrX 135806704 135807026 -26792904 - MER33 DNA MER1_type -15 309 1 238 269 30 0 chrX 135807207 135807274 -26792656 + L2 LINE L2 2985 3053 -219 189 304 18 0 chrX 135808039 135808095 -26791835 + MIR SINE MIR 82 138 -70 349 316 36 42 chrX 135809048 135809216 -26790714 - MARNA DNA Mariner -8 578 412 329 299 88 46 chrX 135809054 135809248 -26790682 + MARNA DNA Mariner 15 216 -370 * 484 45 110 0 chrX 135809596 135809847 -26790083 + (TA)n Simple_repeat Simple_repeat 1 278 0 925 201 49 27 chrX 135810283 135810467 -26789463 - MER5A DNA MER1_type 0 189 2 386 248 87 44 chrX 135810525 135810731 -26789199 + MIR SINE MIR 20 234 -28 420 215 20 94 chrX 135810910 135811059 -26788871 + MIR3 SINE MIR 70 207 -1 764 311 71 74 chrX 135811380 135811718 -26788212 - L2 LINE L2 -4 3268 2932 984 185 26 21 chrX 135811782 135811971 -26787959 - MER20 DNA MER1_type 0 219 30 204 307 158 33 chrX 135812044 135812406 -26787524 - L2 LINE L2 -476 2838 2432 2298 178 13 3 chrX 135812480 135812857 -26787073 - MER70A LTR ERVL -4 468 88 1034 166 0 0 chrX 135812850 135813007 -26786923 - MER70B LTR ERVL -416 162 6 * 676 289 248 18 chrX 135813296 135813857 -26786073 + L3 LINE CR1 576 1265 -312 225 278 176 0 chrX 135813909 135814017 -26785913 + L2 LINE L2 2208 2334 -980 435 350 128 31 chrX 135814071 135814482 -26785448 + L2 LINE L2 2546 3044 -228 2036 140 3 7 chrX 135814482 135814782 -26785148 - AluJb SINE Alu -11 301 3 435 350 128 31 chrX 135814782 135815005 -26784925 + L2 LINE L2 3044 3244 -28 1840 147 7 0 chrX 135816642 135816914 -26783016 - AluSx SINE Alu -38 274 1 260 326 72 29 chrX 135817012 135817150 -26782780 - L2 LINE L2 -230 3042 2899 264 333 0 22 chrX 135819144 135819282 -26780648 + (CCCGAA)n Simple_repeat Simple_repeat 1 135 0 2565 115 16 16 chrX 135822054 135822429 -26777501 - THE1C LTR MaLR 0 375 1 1089 211 24 0 chrX 135823397 135823610 -26776320 + MER58A DNA MER1_type 4 221 -3 237 246 18 18 chrX 135823741 135823798 -26776132 - L2 LINE L2 -16 3256 3200 301 269 83 28 chrX 135823961 135824069 -26775861 - HAL1b LINE L1 -29 1319 1206 1125 226 9 0 chrX 135824312 135824533 -26775397 + MIR SINE MIR 16 238 -24 1622 184 14 3 chrX 135824538 135824821 -26775109 - AluJo SINE Alu -10 302 17 258 81 0 0 chrX 135825578 135825615 -26774315 + (A)n Simple_repeat Simple_repeat 1 37 0 1896 141 3 48 chrX 135826211 135826523 -26773407 + AluJb SINE Alu 1 298 -14 249 333 0 20 chrX 135826749 135826851 -26773079 + MER5A DNA MER1_type 7 106 -83 1162 163 16 0 chrX 135826852 135827042 -26772888 - AluJo SINE Alu -119 193 1 228 255 0 0 chrX 135827602 135827653 -26772277 - MIR SINE MIR -12 250 200 978 128 0 8 chrX 135827755 135827888 -26772042 - FLAM_C SINE Alu -1 132 1 418 243 0 9 chrX 135827888 135827999 -26771931 - MIR SINE MIR -62 200 91 572 248 83 23 chrX 135828067 135828285 -26771645 - L1MC5 LINE L1 -37 7924 7694 435 294 66 7 chrX 135828303 135828439 -26771491 - MIR SINE MIR -98 164 21 482 179 0 12 chrX 135829200 135829284 -26770646 - MIR SINE MIR -85 123 41 881 291 0 13 chrX 135829402 135829636 -26770294 + MIR SINE MIR 6 236 -26 200 295 49 44 chrX 135830360 135830543 -26769387 + L2 LINE L2 2791 2974 -340 231 270 16 0 chrX 135830598 135830661 -26769269 + (CA)n Simple_repeat Simple_repeat 2 65 0 357 276 39 31 chrX 135830665 135830792 -26769138 + L2 LINE L2 2981 3108 -164 183 297 77 66 chrX 135830973 135831064 -26768866 + L2 LINE L2 3137 3228 -44 645 268 87 65 chrX 135831084 135831405 -26768525 - L2 LINE L2 0 3313 2986 637 170 0 0 chrX 135831455 135831555 -26768375 - Tigger7 DNA MER2_type 0 2491 2392 * 1563 203 4 4 chrX 135831552 135831818 -26768112 - Tigger7 DNA MER2_type -2220 267 2 211 309 88 59 chrX 135832395 135832531 -26767399 + L2 LINE L2 3125 3264 -8 2008 208 102 51 chrX 135832659 135833219 -26766711 - MLT2F LTR ERVL 0 663 66 2272 115 0 10 chrX 135833219 135833531 -26766399 + AluSx SINE Alu 1 309 -3 2008 208 102 51 chrX 135833531 135833596 -26766334 - MLT2F LTR ERVL -597 66 6 327 49 0 0 chrX 135834157 135834198 -26765732 + (CA)n Simple_repeat Simple_repeat 1 41 0 1369 144 0 31 chrX 135834916 135835145 -26764785 - AluJo SINE Alu -84 228 7 706 280 95 62 chrX 135835183 135835836 -26764094 + L1MC4a LINE L1 5199 5364 -782 21 57 0 0 chrX 135836039 135836074 -26763856 + AT_rich Low_complexity Low_complexity 1 35 0 225 359 79 56 chrX 135837321 135837714 -26762216 - L3 LINE CR1 -878 699 298 270 56 0 0 chrX 135838057 135838093 -26761837 + (TG)n Simple_repeat Simple_repeat 2 37 0 277 272 40 16 chrX 135838789 135838941 -26760989 - MIR SINE MIR 0 262 61 232 271 0 0 chrX 135838991 135839050 -26760880 + HsTC2 DNA Tc2 29 87 -1811 323 43 0 22 chrX 135839082 135839128 -26760802 + (TTTCC)n Simple_repeat Simple_repeat 1 45 0 1074 93 6 12 chrX 135839128 135839300 -26760630 + (TTTC)n Simple_repeat Simple_repeat 3 173 0 2087 108 4 0 chrX 135839300 135839578 -26760352 - AluSq SINE Alu -34 279 1 231 272 131 42 chrX 135839655 135839968 -26759962 - L1ME4a LINE L1 -125 5996 5656 234 368 104 41 chrX 135840526 135840795 -26759135 + L2 LINE L2 2632 2917 -397 484 298 132 19 chrX 135840833 135841038 -26758892 + MIR SINE MIR 22 249 -13 341 283 87 29 chrX 135841078 135841216 -26758714 + L2 LINE L2 2919 3064 -208 2193 70 3 0 chrX 135841329 135841615 -26758315 - L1PA7 LINE L1 -1 6153 5867 305 269 96 0 chrX 135841867 135841971 -26757959 - MIR SINE MIR -72 190 77 888 221 10 5 chrX 135842103 135842298 -26757632 + MER68 LTR ERV1 297 492 -70 1024 223 0 5 chrX 135842331 135842537 -26757393 + MIR SINE MIR 58 262 0 354 286 14 41 chrX 135843020 135843167 -26756763 - L1ME4a LINE L1 -180 5941 5799 198 228 0 18 chrX 135843315 135843372 -26756558 - L3 LINE CR1 -871 706 651 333 289 28 7 chrX 135843484 135843626 -26756304 + LTR16B LTR ERVL 320 464 0 404 276 250 0 chrX 135844039 135844195 -26755735 - MIR SINE MIR 0 262 68 2253 99 7 3 chrX 135844212 135844514 -26755416 + AluSc SINE Alu 1 303 -6 394 292 135 28 chrX 135845715 135845893 -26754037 - MIR SINE MIR -7 255 59 461 198 8 58 chrX 135846267 135846388 -26753542 - L2 LINE L2 -4 3309 3195 284 217 16 124 chrX 135846378 135846507 -26753423 + L2 LINE L2 3106 3220 -93 * 327 210 121 81 chrX 135847015 135847139 -26752791 + L2 LINE L2 3181 3309 -4 624 193 25 79 chrX 135847482 135847649 -26752281 - L1ME3A LINE L1 -216 6023 5867 2039 147 0 0 chrX 135847649 135847941 -26751989 + AluJb SINE Alu 1 292 -20 624 193 25 79 chrX 135847941 135847975 -26751955 - L1ME3A LINE L1 -372 5867 5833 205 296 25 0 chrX 135847975 135848056 -26751874 + (CAT)n Simple_repeat Simple_repeat 1 83 0 691 298 51 0 chrX 135848056 135848371 -26751559 - L1ME3A LINE L1 -414 5817 5487 575 259 78 81 chrX 135848357 135848803 -26751127 - L1MEc LINE L1 -3195 3020 2574 * 1815 160 42 3 chrX 135848803 135849090 -26750840 - AluJo SINE Alu -14 298 1 575 259 78 81 chrX 135849090 135849684 -26750246 - L1MEc LINE L1 -3641 2574 2030 514 325 117 35 chrX 135850869 135851297 -26748633 - L1ME4a LINE L1 -107 6014 5552 1170 185 92 69 chrX 135851302 135851500 -26748430 + MER2 DNA MER2_type 1 193 -151 1899 169 7 0 chrX 135851500 135851796 -26748134 - AluJb SINE Alu -14 298 1 1170 185 92 69 chrX 135851796 135851853 -26748077 + MER2 DNA MER2_type 193 247 -97 2122 92 37 17 chrX 135851853 135852148 -26747782 - AluSq SINE Alu -11 302 2 1170 185 92 69 chrX 135852148 135852226 -26747704 + MER2 DNA MER2_type 247 343 -1 392 323 47 16 chrX 135852314 135852441 -26747489 - L2 LINE L2 -3 3269 3139 25 0 0 0 chrX 135853033 135853058 -26746872 + AT_rich Low_complexity Low_complexity 1 25 0 686 288 38 25 chrX 135853162 135853398 -26746532 + MIR SINE MIR 20 258 -4 202 278 0 42 chrX 135853786 135853858 -26746072 - MIR3 SINE MIR -16 192 124 204 243 0 29 chrX 135855072 135855142 -26744788 + A-rich Low_complexity Low_complexity 3 70 0 333 0 0 0 chrX 135855663 135855700 -26744230 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 381 214 14 0 chrX 135855700 135855770 -26744160 - L2 LINE L2 -13 3259 3189 185 184 0 26 chrX 135856264 135856302 -26743628 - MIR3 SINE MIR -4 204 168 557 278 148 0 chrX 135856312 135856474 -26743456 + MER5A DNA MER1_type 4 189 0 209 277 0 31 chrX 135856679 135856744 -26743186 - MIR SINE MIR -103 105 43 424 283 36 36 chrX 135858608 135858746 -26741184 + MER5A DNA MER1_type 4 141 -48 539 189 37 100 chrX 135858828 135858881 -26741049 + MER5B DNA MER1_type 1 56 -122 267 31 0 0 chrX 135858881 135858913 -26741017 + (CA)n Simple_repeat Simple_repeat 2 33 0 539 189 37 100 chrX 135858913 135859049 -26740881 + MER5B DNA MER1_type 56 178 0 254 295 189 0 chrX 135859188 135859283 -26740647 - L2 LINE L2 -19 3294 3182 2850 167 18 2 chrX 135860726 135861276 -26738654 - L1MB7 LINE L1 -34 6150 5592 390 268 235 28 chrX 135861862 135862075 -26737855 - MIR SINE MIR -3 259 3 689 328 79 65 chrX 135862389 135862819 -26737111 + L2 LINE L2 2837 3272 0 473 258 184 24 chrX 135862832 135863056 -26736874 - MIR SINE MIR -6 256 2 29 0 0 0 chrX 135863276 135863305 -26736625 + AT_rich Low_complexity Low_complexity 1 29 0 1648 166 28 18 chrX 135863305 135863589 -26736341 - AluJo SINE Alu -25 287 1 216 265 0 0 chrX 135864988 135865037 -26734893 - L2 LINE L2 0 3313 3265 2502 254 38 3 chrX 135866145 135867033 -26732897 + L1ME4a LINE L1 3065 3983 -2163 777 42 0 0 chrX 135867354 135867450 -26732480 + U6 snRNA snRNA 1 96 -11 353 225 183 42 chrX 135868898 135869111 -26730819 + L1ME4a LINE L1 5602 5844 -277 24 53 0 0 chrX 135869115 135869153 -26730777 + AT_rich Low_complexity Low_complexity 1 38 0 2137 127 0 10 chrX 135869197 135869497 -26730433 - AluJo SINE Alu -9 303 7 2493 151 29 12 chrX 135869516 135869555 -26730375 - L1MA9 LINE L1 -38 6274 6237 410 63 0 16 chrX 135869555 135869618 -26730312 + (TA)n Simple_repeat Simple_repeat 1 62 0 2493 151 29 12 chrX 135869618 135870063 -26729867 - L1MA9 LINE L1 -75 6237 5782 257 182 91 0 chrX 135870176 135870253 -26729677 + L1MC4 LINE L1 7959 8042 0 327 338 115 44 chrX 135870810 135871290 -26728640 - L1MB7 LINE L1 -748 5398 4885 2307 91 0 3 chrX 135871359 135871656 -26728274 + AluSx SINE Alu 1 296 -16 318 292 36 78 chrX 135871951 135872143 -26727787 + MIR3 SINE MIR 19 202 -6 2044 144 0 0 chrX 135872997 135873302 -26726628 - AluSx SINE Alu -7 305 1 455 320 26 20 chrX 135873719 135873872 -26726058 - MIR SINE MIR -74 188 35 727 275 48 10 chrX 135874237 135874444 -26725486 - MIR SINE MIR -1 261 47 1215 208 29 39 chrX 135874880 135875159 -26724771 + MLT2B1 LTR ERVL 69 344 -176 2305 109 2 128 chrX 135875177 135875645 -26724285 + MLT2A2 LTR ERVL 1 409 -44 344 22 0 0 chrX 135875645 135875690 -26724240 - MLT2A2 LTR ERVL -10 443 399 350 187 56 75 chrX 135875694 135875801 -26724129 + L1MC4 LINE L1 6614 6718 -1324 201 147 0 0 chrX 135875906 135875940 -26723990 + (CA)n Simple_repeat Simple_repeat 2 35 0 368 42 0 0 chrX 135875953 135876001 -26723929 + MLT2A2 LTR ERVL 399 446 -7 297 257 0 0 chrX 135876007 135876077 -26723853 + MLT2B1 LTR ERVL 395 464 -56 306 322 0 0 chrX 135876097 135876187 -26723743 - L1MC4 LINE L1 -1339 6703 6614 * 312 296 23 0 chrX 135876141 135876229 -26723701 + L1MC4 LINE L1 6614 6703 -1339 317 111 37 0 chrX 135876257 135876311 -26723619 + MLT2B1 LTR ERVL 465 520 0 216 282 133 82 chrX 135876747 135876809 -26723121 + L2 LINE L2 2709 2766 -548 6390 183 34 18 chrX 135876809 135878238 -26721692 + Charlie1a DNA MER1_type 1 1453 -2 216 282 133 82 chrX 135878238 135878430 -26721500 + L2 LINE L2 2766 2976 -338 2351 229 38 26 chrX 135878470 135878535 -26721395 - MLT1E2 LTR MaLR 0 626 563 1822 138 3 72 chrX 135878535 135878855 -26721075 + AluSx SINE Alu 1 298 -14 2351 229 38 26 chrX 135878855 135879392 -26720538 - MLT1E2 LTR MaLR -63 563 17 609 260 44 69 chrX 135879479 135879930 -26720000 + MLT1J LTR MaLR 1 475 -36 771 237 16 21 chrX 135879963 135880149 -26719781 + L2 LINE L2 3128 3312 -1 24 53 0 0 chrX 135880672 135880710 -26719220 + AT_rich Low_complexity Low_complexity 1 38 0 209 119 24 0 chrX 135880972 135881014 -26718916 + GA-rich Low_complexity Low_complexity 2 44 0 791 208 10 35 chrX 135881636 135881833 -26718097 - L2 LINE L2 0 3313 3122 1134 187 10 38 chrX 135882562 135882771 -26717159 + AluJo SINE Alu 79 281 -31 2090 98 3 7 chrX 135884860 135885193 -26714737 + AluSq SINE Alu 1 332 0 257 269 0 13 chrX 135886481 135886559 -26713371 + GA-rich Low_complexity Low_complexity 3 79 0 346 69 35 0 chrX 135886560 135886618 -26713312 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 696 238 90 37 chrX 135886817 135887061 -26712869 - L1ME1 LINE L1 -7 6159 5903 5719 107 8 1 chrX 135887067 135887944 -26711986 + L1PA14 LINE L1 5279 6161 0 755 188 90 18 chrX 135887940 135888163 -26711767 - L1ME1 LINE L1 -235 5931 5693 * 1217 167 13 70 chrX 135888163 135888391 -26711539 - AluJo SINE Alu -14 298 84 1803 214 27 25 chrX 135888391 135889004 -26710926 - L1ME1 LINE L1 -469 5697 5087 247 249 6 99 chrX 135889029 135889210 -26710720 - L1MC4 LINE L1 0 8042 7879 894 150 0 0 chrX 135889227 135889367 -26710563 - FRAM SINE Alu -15 161 22 971 262 128 37 chrX 135889382 135889944 -26709986 - L1MC4 LINE L1 -144 7898 7286 1240 252 49 17 chrX 135889973 135890441 -26709489 - L1MC4 LINE L1 -791 7251 6769 3166 146 23 26 chrX 135890607 135891631 -26708299 + L1M2 LINE L1 4782 5801 -499 219 69 0 0 chrX 135891632 135891661 -26708269 + (TC)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chrX 135891690 135891719 -26708211 + AT_rich Low_complexity Low_complexity 1 29 0 2820 147 30 15 chrX 135891720 135892252 -26707678 + L1MA6 LINE L1 5761 6300 0 378 319 30 7 chrX 135892295 135892430 -26707500 - MIR3 SINE MIR -4 204 67 2143 129 3 0 chrX 135892515 135892825 -26707105 - AluSx SINE Alu -1 311 1 188 344 54 0 chrX 135893436 135893529 -26706401 + L3b LINE CR1 1407 1504 -79 2768 137 13 2 chrX 135894509 135894969 -26704961 - L1MB2 LINE L1 0 6171 5707 191 412 20 0 chrX 135895416 135895518 -26704412 + MER5B DNA MER1_type 1 104 -74 2191 175 41 19 chrX 135895522 135895933 -26703997 - MSTB LTR MaLR 0 426 7 417 247 12 0 chrX 135897411 135897496 -26702434 - Tigger7 DNA MER2_type -1 2586 2501 2471 168 12 12 chrX 135897502 135897919 -26702011 - Tigger7 DNA MER2_type -2070 417 1 1086 186 6 0 chrX 135899408 135899585 -26700345 + MER45A DNA AcHobo 1 178 0 288 248 207 8 chrX 135901017 135901138 -26698792 - MIR SINE MIR -117 145 1 199 326 138 14 chrX 135901271 135901409 -26698521 + L2 LINE L2 2715 2869 -445 1779 161 8 53 chrX 135901450 135901811 -26698119 - MLT1A2 LTR MaLR 0 374 30 1895 155 0 7 chrX 135901811 135902101 -26697829 + AluJo SINE Alu 2 289 -23 363 179 17 8 chrX 135902104 135902221 -26697709 + (TA)n Simple_repeat Simple_repeat 1 118 0 249 247 326 0 chrX 135902463 135902552 -26697378 - L2 LINE L2 -5 3267 3150 281 353 104 39 chrX 135902563 135902977 -26696953 + L2 LINE L2 1730 2170 -1144 216 306 0 28 chrX 135902988 135903060 -26696870 + MER5A DNA MER1_type 14 83 -106 684 330 105 14 chrX 135903611 135903963 -26695967 - L2 LINE L2 -2365 949 566 180 323 131 65 chrX 135904136 135904365 -26695565 + L2 LINE L2 3021 3264 -8 1684 75 4 0 chrX 135904552 135904778 -26695152 + L1PA7 LINE L1 5928 6154 0 246 128 0 0 chrX 135905092 135905131 -26694799 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 351 140 0 0 chrX 135905564 135905621 -26694309 + L1MA3 LINE L1 5163 5219 -927 5478 117 24 1 chrX 135905632 135906484 -26693446 + L1MA3 LINE L1 5431 6301 -4 27 0 0 0 chrX 135906484 135906511 -26693419 + AT_rich Low_complexity Low_complexity 1 27 0 238 267 27 0 chrX 135906844 135906919 -26693011 + LTR11 LTR ERV 425 501 -183 2368 213 79 9 chrX 135906938 135907519 -26692411 + MLT1E2 LTR MaLR 1 622 -4 1809 188 49 6 chrX 135907987 135908332 -26691598 + MLT1A1 LTR MaLR 1 360 -5 7509 222 52 46 chrX 135908362 135909282 -26690648 + L1MC/D LINE L1 2902 3815 -2360 1982 123 3 7 chrX 135909282 135909597 -26690333 + AluSx SINE Alu 1 314 0 7509 222 52 46 chrX 135909597 135910197 -26689733 + L1MC/D LINE L1 3815 4410 -1765 1667 83 16 0 chrX 135910197 135910439 -26689491 + L1MA2 LINE L1 6051 6296 -8 7509 222 52 46 chrX 135910439 135911189 -26688741 + L1MC/D LINE L1 4410 5154 -1021 2544 58 7 3 chrX 135911189 135911497 -26688433 - AluY SINE Alu -2 309 1 7509 222 52 46 chrX 135911497 135911521 -26688409 + L1MC/D LINE L1 5154 5176 -999 2006 133 0 0 chrX 135911521 135911864 -26688066 - AluSx SINE Alu 0 347 5 7509 222 52 46 chrX 135911864 135912106 -26687824 + L1MC/D LINE L1 5176 5430 -745 266 296 0 11 chrX 135912134 135912282 -26687648 + A-rich Low_complexity Low_complexity 1 146 0 1501 210 96 14 chrX 135913094 135913460 -26686470 + MSTD LTR MaLR 1 396 0 758 267 93 13 chrX 135914097 135914333 -26685597 + MIR SINE MIR 8 262 0 198 0 0 0 chrX 135915030 135915052 -26684878 + (A)n Simple_repeat Simple_repeat 1 22 0 308 308 135 13 chrX 135915162 135915318 -26684612 - MIR SINE MIR -67 195 21 220 274 168 21 chrX 135915705 135915800 -26684130 + MIR3 SINE MIR 46 154 -54 2379 264 127 49 chrX 135915804 135916682 -26683248 + L1M4b LINE L1 -302 910 -5636 12300 185 11 15 chrX 135916982 135920571 -26679359 + L1PB3 LINE L1 2569 6154 0 547 216 63 23 chrX 135920567 135920777 -26679153 + L1M4b LINE L1 1328 1904 -4661 * 1006 224 21 5 chrX 135921804 135921996 -26677934 + MIR SINE MIR 4 198 -64 275 205 60 12 chrX 135922098 135922181 -26677749 - MIR SINE MIR -56 206 120 253 227 15 0 chrX 135923168 135923234 -26676696 + GA-rich Low_complexity Low_complexity 2 68 0 292 254 119 17 chrX 135923275 135923393 -26676537 + MIR3 SINE MIR 38 167 -41 242 245 92 61 chrX 135923849 135923947 -26675983 + L2 LINE L2 3178 3278 -35 397 359 0 0 chrX 135924071 135924199 -26675731 - L3 LINE CR1 -127 1450 1323 2340 98 3 12 chrX 135924358 135924704 -26675226 + L1PB2 LINE L1 5807 6149 -2 1103 222 28 16 chrX 135924809 135925057 -26674873 - MIR SINE MIR -10 252 2 380 132 0 0 chrX 135925611 135925664 -26674266 + Tigger4(Zombi) DNA MER2_type 2679 2731 0 6202 192 67 28 chrX 135925677 135926533 -26673397 - L1MC4 LINE L1 -151 7891 6949 1366 194 75 24 chrX 135926533 135926827 -26673103 + AluJo SINE Alu 2 310 -2 6202 192 67 28 chrX 135926827 135927460 -26672470 - L1MC4 LINE L1 -1093 6949 6343 207 0 0 0 chrX 135927628 135927651 -26672279 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 204 40 0 0 chrX 135927975 135928000 -26671930 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2582 52 3 3 chrX 135928347 135928657 -26671273 + AluY SINE Alu 2 311 0 3418 232 87 27 chrX 135928997 135930323 -26669607 - L1MC4a LINE L1 -773 5373 4902 294 309 0 12 chrX 135930355 135930436 -26669494 - MIR SINE MIR -117 145 66 * 619 244 98 138 chrX 135930422 135930859 -26669071 - L2 LINE L2 -249 3064 2659 2261 104 0 3 chrX 135930859 135931158 -26668772 + AluSx SINE Alu 1 298 -14 619 244 98 138 chrX 135931158 135931271 -26668659 - L2 LINE L2 -654 2659 2543 1538 318 40 56 chrX 135931731 135932278 -26667652 + L2 LINE L2 2231 2756 -516 849 156 104 71 chrX 135932278 135932489 -26667441 - MER20 DNA MER1_type 0 219 2 1538 318 40 56 chrX 135932489 135932807 -26667123 + L2 LINE L2 2756 3078 -194 514 296 23 89 chrX 135932880 135933137 -26666793 + MIR SINE MIR 23 262 0 450 143 0 0 chrX 135933137 135933214 -26666716 + (CTA)n Simple_repeat Simple_repeat 3 79 0 1983 165 51 14 chrX 135933465 135933816 -26666114 - THE1B LTR MaLR 0 364 1 24 32 0 0 chrX 135933956 135933987 -26665943 + AT_rich Low_complexity Low_complexity 1 31 0 1293 185 78 60 chrX 135934117 135934452 -26665478 + MLT1D LTR MaLR 21 361 -144 4013 169 68 17 chrX 135934532 135935426 -26664504 - L1MB7 LINE L1 -18 6664 5727 3168 233 24 25 chrX 135935593 135936525 -26663405 - L1MB7 LINE L1 -897 5747 4817 3357 221 20 0 chrX 135936857 135937610 -26662320 - L1MB7 LINE L1 -1817 4827 4060 5867 148 27 3 chrX 135937627 135939134 -26660796 - L1MA4 LINE L1 -7 6293 4747 1615 68 9 0 chrX 135939722 135939944 -26659986 - L1MA1 LINE L1 0 6302 6079 482 197 16 16 chrX 135939944 135940055 -26659875 - L1MA4 LINE L1 -1389 4757 4644 * 575 144 51 8 chrX 135940040 135940158 -26659772 - L1MA4 LINE L1 -1725 4421 4299 * 3636 233 21 54 chrX 135940151 135941504 -26658426 - L1MB7 LINE L1 -2555 4089 2782 253 167 0 0 chrX 135941497 135941539 -26658391 + L1M4 LINE L1 95 136 -6406 * 329 222 71 20 chrX 135941537 135941636 -26658294 - L1MB7 LINE L1 -6431 111 8 307 256 111 58 chrX 135941633 135941805 -26658125 - L1M4 LINE L1 -3238 2908 2728 * 229 78 0 39 chrX 135941885 135941936 -26657994 + (TA)n Simple_repeat Simple_repeat 1 49 0 378 255 46 122 chrX 135942038 135942234 -26657696 + MIR SINE MIR 23 203 -59 837 78 78 0 chrX 135942468 135942584 -26657346 - AluSq/x SINE Alu -187 125 1 186 253 93 13 chrX 135943373 135943448 -26656482 - MIR SINE MIR -59 203 123 24 53 0 0 chrX 135943497 135943535 -26656395 + AT_rich Low_complexity Low_complexity 1 38 0 689 250 68 43 chrX 135943584 135943864 -26656066 - MARNA DNA Mariner -164 422 136 21 0 0 0 chrX 135945490 135945511 -26654419 + AT_rich Low_complexity Low_complexity 1 21 0 259 346 138 0 chrX 135945786 135945916 -26654014 - L2 LINE L2 -1 3271 3124 2219 103 3 3 chrX 135946015 135946306 -26653624 + AluSx SINE Alu 1 291 -21 225 250 0 0 chrX 135946333 135946385 -26653545 - MIR SINE MIR -69 139 88 306 209 52 35 chrX 135947459 135947574 -26652356 - MIR SINE MIR -12 250 134 6624 20 0 0 chrX 135948602 135949359 -26650571 + L1PA3 LINE L1 5396 6152 -3 231 303 15 15 chrX 135949973 135950039 -26649891 + MIR SINE MIR 46 111 -97 1190 196 45 8 chrX 135950039 135950284 -26649646 - MIR SINE MIR -7 255 2 997 135 6 0 chrX 135950618 135950788 -26649142 - L1MA5A LINE L1 0 6297 6127 793 274 82 5 chrX 135951704 135951923 -26648007 - MIR SINE MIR -21 241 6 513 250 77 13 chrX 135952422 135952578 -26647352 - MIR SINE MIR -12 250 85 233 325 0 32 chrX 135953126 135953249 -26646681 + GA-rich Low_complexity Low_complexity 3 121 0 27 0 0 0 chrX 135953426 135953453 -26646477 + AT_rich Low_complexity Low_complexity 1 27 0 314 316 132 21 chrX 135953588 135953778 -26646152 - L1ME LINE L1 -321 5800 5590 393 326 100 36 chrX 135954164 135954523 -26645407 - L1ME LINE L1 -1068 5078 4697 264 308 43 22 chrX 135954583 135954768 -26645162 - L1ME LINE L1 -1552 4594 4406 580 143 0 0 chrX 135954772 135954863 -26645067 - AluJ/FRAM SINE Alu -8 304 214 1217 161 125 11 chrX 135954949 135955228 -26644702 + L1MC1 LINE L1 6023 6333 0 511 299 173 30 chrX 135955239 135955637 -26644293 - L1ME LINE L1 -1955 4191 3737 521 291 159 9 chrX 135955726 135955953 -26643977 + MIR SINE MIR 2 262 0 392 55 18 0 chrX 135957273 135957328 -26642602 + (TTC)n Simple_repeat Simple_repeat 2 57 0 1882 107 92 0 chrX 135957326 135957623 -26642307 - AluSx SINE Alu 0 321 1 340 284 128 94 chrX 135959986 135960455 -26639475 - L1M2 LINE L1 -5919 930 446 183 184 0 0 chrX 135960935 135960973 -26638957 + (CTG)n Simple_repeat Simple_repeat 1 38 0 288 153 28 14 chrX 135961168 135961240 -26638690 + CT-rich Low_complexity Low_complexity 3 75 0 246 32 0 0 chrX 135961635 135961666 -26638264 + (CTAG)n Simple_repeat Simple_repeat 2 32 0 201 74 0 0 chrX 135962700 135962727 -26637203 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 220 319 106 0 chrX 135963077 135963171 -26636759 + L2 LINE L2 3153 3256 -16 291 54 0 0 chrX 135964909 135964946 -26634984 + (TG)n Simple_repeat Simple_repeat 2 38 0 286 180 0 0 chrX 135965474 135965524 -26634406 + L2 LINE L2 3222 3271 -1 22 0 0 0 chrX 135965867 135965889 -26634041 + AT_rich Low_complexity Low_complexity 1 22 0 2777 122 25 0 chrX 135967501 135967944 -26631986 - L1MA5 LINE L1 -3 6297 5844 23 54 0 0 chrX 135970381 135970418 -26629512 + AT_rich Low_complexity Low_complexity 1 37 0 2211 115 3 0 chrX 135970598 135970903 -26629027 - AluSx SINE Alu -6 306 1 689 279 31 24 chrX 135971086 135971340 -26628590 - MER112 DNA MER1_type -4 256 1 29 0 0 0 chrX 135973618 135973647 -26626283 + AT_rich Low_complexity Low_complexity 1 29 0 268 266 0 31 chrX 135974229 135974293 -26625637 - L2 LINE L2 -1 3271 3210 222 304 184 33 chrX 135974852 135975188 -26624742 - L2 LINE L2 -1286 2028 1642 201 74 0 0 chrX 135976238 135976265 -26623665 + (TG)n Simple_repeat Simple_repeat 2 28 0 1841 125 13 35 chrX 135978157 135978468 -26621462 - AluJo SINE Alu -8 304 1 21 82 0 0 chrX 135978537 135978586 -26621344 + AT_rich Low_complexity Low_complexity 1 49 0 749 326 13 8 chrX 135978728 135978964 -26620966 - MIR SINE MIR -25 237 1 339 253 13 0 chrX 135979499 135979578 -26620352 - L2 LINE L2 -2 3311 3232 2115 163 35 17 chrX 135979715 135980175 -26619755 + L1MB7 LINE L1 5710 6177 -7 196 365 0 0 chrX 135980453 135980505 -26619425 + L2 LINE L2 3196 3247 -25 198 373 157 0 chrX 135980716 135980818 -26619112 - L3 LINE CR1 -44 1533 1416 1047 254 21 8 chrX 135981191 135981427 -26618503 + MIR SINE MIR 2 240 -22 2080 116 6 19 chrX 135984903 135985214 -26614716 - AluSx SINE Alu -5 307 1 2327 86 0 7 chrX 135986490 135986793 -26613137 - AluSx SINE Alu -11 301 1 285 98 0 0 chrX 135987257 135987298 -26612632 + (CA)n Simple_repeat Simple_repeat 2 42 0 1685 163 17 21 chrX 136038097 136038385 -26561545 + AluJo SINE Alu 1 287 -25 346 259 111 37 chrX 136038418 136038553 -26561377 + MIR3 SINE MIR 48 192 -16 381 306 9 0 chrX 136038598 136038706 -26561224 + MIR3 SINE MIR 88 196 -12 269 176 77 88 chrX 136039207 136039298 -26560632 + Charlie8 DNA MER1_type 1 90 -2327 1906 138 18 0 chrX 136039821 136040096 -26559834 + AluSx SINE Alu 1 280 -32 263 284 84 0 chrX 136041125 136041220 -26558710 + L2 LINE L2 2211 2313 -1001 * 1071 320 28 18 chrX 136041213 136041600 -26558330 - L2 LINE L2 -5 3308 2918 1169 233 38 74 chrX 136041734 136041949 -26557981 - L1MEc LINE L1 -4308 2088 1867 2179 104 0 0 chrX 136041949 136042238 -26557692 - AluSg SINE Alu -12 298 10 1169 233 38 74 chrX 136042238 136042317 -26557613 - L1MEc LINE L1 -4529 1867 1787 2024 109 46 0 chrX 136042317 136042601 -26557329 + L1PA13 LINE L1 5864 6160 -3 1169 233 38 74 chrX 136042601 136042752 -26557178 - L1MEc LINE L1 -4609 1787 1658 14641 35 3 0 chrX 136042762 136044594 -26555336 - L1PA4 LINE L1 -2425 3721 1886 13786 40 1 0 chrX 136044594 136047035 -26552895 + L1PA4 LINE L1 3714 6154 -1 1011 148 17 11 chrX 136047047 136047223 -26552707 - MLT1D LTR MaLR -328 177 1 289 348 106 35 chrX 136047369 136047510 -26552420 - L2 LINE L2 0 3272 3122 2104 303 36 19 chrX 136047864 136048833 -26551097 + L1MEc LINE L1 255 1240 -5367 6524 145 51 8 chrX 136048836 136049922 -26550008 + L1M3d LINE L1 1 1132 -4759 2284 100 3 0 chrX 136049922 136050223 -26549707 + AluSx SINE Alu 1 302 -10 1602 128 64 24 chrX 136050223 136050552 -26549378 + L1MEc LINE L1 1204 1545 -4881 2064 42 15 0 chrX 136050653 136050913 -26549017 + L1PA4 LINE L1 5892 6155 0 1589 283 92 49 chrX 136050987 136052440 -26547490 - L1ME LINE L1 -4851 1545 100 489 301 130 37 chrX 136052658 136052957 -26546973 - L2 LINE L2 -8 3264 2938 226 239 113 0 chrX 136052995 136053066 -26546864 + L2 LINE L2 3137 3215 -57 1357 135 47 0 chrX 136053860 136054075 -26545855 - Tigger3(Golem) DNA MER2_type -46 2983 2759 3832 126 6 3 chrX 136054081 136054702 -26545228 + L1P LINE L1 2382 3004 -3142 3063 174 79 50 chrX 136055347 136056094 -26543836 - L1MB7 LINE L1 0 6184 5416 1764 121 40 8 chrX 136059337 136059685 -26540245 - Tigger4(Zombi) DNA MER2_type 0 2731 1 350 223 102 76 chrX 136060077 136060234 -26539696 + MIR SINE MIR 48 208 -54 532 103 13 0 chrX 136062553 136062631 -26537299 - MADE1 DNA Mariner -1 79 1 2300 212 29 49 chrX 136062675 136063270 -26536660 - L1MD3 LINE L1 -8 7987 7405 382 222 0 0 chrX 136063313 136063394 -26536536 - HsTC2 DNA Tc2 -1808 90 10 728 273 83 37 chrX 136063587 136064078 -26535852 - L2 LINE L2 -50 3263 2751 425 295 56 53 chrX 136064553 136064838 -26535092 + MER68 LTR ERV1 229 514 -48 2115 131 11 102 chrX 136065018 136065477 -26534453 + L1MB7 LINE L1 5752 6168 -16 237 154 218 0 chrX 136065610 136065688 -26534242 - L1MC4a LINE L1 -1837 5971 5877 245 250 0 13 chrX 136065701 136065777 -26534153 + L1M4 LINE L1 2269 2343 -3803 5094 204 39 69 chrX 136065778 136066738 -26533192 + L1MC4a LINE L1 6337 7236 -572 1836 144 23 26 chrX 136066738 136067043 -26532887 + AluJo SINE Alu 3 306 -6 5094 204 39 69 chrX 136067043 136067598 -26532332 + L1MC4a LINE L1 7236 7806 -2 226 291 0 35 chrX 136067895 136067981 -26531949 - MIR SINE MIR -68 140 58 295 359 108 56 chrX 136070969 136071359 -26528571 - L2 LINE L2 -4 3268 2859 221 239 183 14 chrX 136071668 136071739 -26528191 + L2 LINE L2 3185 3267 -5 247 385 24 0 chrX 136073098 136073181 -26526749 + polypurine Low_complexity Low_complexity 3 87 0 816 200 50 6 chrX 136074980 136075160 -26524770 + MER5A DNA MER1_type 1 188 -1 225 255 57 28 chrX 136075360 136075466 -26524464 - MER103 DNA DNA -19 147 39 261 0 0 0 chrX 136075791 136075820 -26524110 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chrX 136075950 136075992 -26523938 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrX 136076003 136076024 -26523906 + AT_rich Low_complexity Low_complexity 1 21 0 628 124 0 62 chrX 136077156 136077223 -26522707 - AluJb SINE Alu -16 296 237 5390 69 29 31 chrX 136077223 136078004 -26521926 + LTR17 LTR ERV1 1 780 0 628 124 0 62 chrX 136078004 136078049 -26521881 - AluJb SINE Alu -75 237 191 1786 160 0 11 chrX 136078925 136079249 -26520681 + AluJb SINE Alu 1 321 0 776 238 210 5 chrX 136079498 136079712 -26520218 + MIR SINE MIR 3 260 -2 4275 134 13 25 chrX 136081283 136081642 -26518288 - L1MA4 LINE L1 -9 6291 5929 306 0 0 0 chrX 136081642 136081676 -26518254 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4275 134 13 25 chrX 136081676 136082083 -26517847 - L1MA4 LINE L1 -371 5929 5534 244 233 0 0 chrX 136083277 136083320 -26516610 + MIR3 SINE MIR 118 160 -48 509 232 26 19 chrX 136083394 136083549 -26516381 + MER103 DNA DNA 10 165 -1 261 206 59 98 chrX 136083564 136083666 -26516264 + MIR3 SINE MIR 109 206 -2 529 143 0 31 chrX 136084681 136084779 -26515151 - MER53 DNA DNA -94 95 1 249 338 60 30 chrX 136086202 136086335 -26513595 - L2 LINE L2 -9 3263 3127 351 293 98 35 chrX 136086462 136086636 -26513294 + MIR3 SINE MIR 3 187 -21 467 19 0 0 chrX 136089977 136090030 -26509900 + (A)n Simple_repeat Simple_repeat 1 53 0 233 313 46 62 chrX 136090030 136090225 -26509705 - L2 LINE L2 -1035 2279 2088 2186 91 10 17 chrX 136092250 136092548 -26507382 - AluSq SINE Alu -4 309 14 1519 175 14 54 chrX 136092562 136092916 -26507014 - L1MD3 LINE L1 -1 7994 7655 524 84 11 32 chrX 136093916 136094011 -26505919 - L1MA9 LINE L1 -5 6307 6215 965 147 8 39 chrX 136094015 136094227 -26505703 + L1MA8 LINE L1 5835 6023 -268 1404 176 4 47 chrX 136096572 136096851 -26503079 - AluJo SINE Alu -15 297 31 532 205 98 16 chrX 136097514 136097636 -26502294 + MER69 DNA AcHobo 4 135 -1091 1074 79 0 0 chrX 136097967 136098107 -26501823 - L1PA3 LINE L1 -3 6152 6013 273 176 0 0 chrX 136098216 136098267 -26501663 + tRNA-Ile-ATT tRNA tRNA 1 51 -26 186 133 0 0 chrX 136098845 136098875 -26501055 + (TATG)n Simple_repeat Simple_repeat 2 31 0 198 71 0 0 chrX 136099397 136099425 -26500505 + (TGG)n Simple_repeat Simple_repeat 1 28 0 483 235 9 0 chrX 136099607 136099722 -26500208 - L1MA10 LINE L1 -1 6333 6218 376 211 22 22 chrX 136101265 136101355 -26498575 + L1MC4 LINE L1 6614 6703 -1339 363 145 0 0 chrX 136101356 136101425 -26498505 + (TA)n Simple_repeat Simple_repeat 1 69 0 353 261 0 11 chrX 136101426 136101518 -26498412 + L1MC4 LINE L1 6613 6703 -1339 306 275 34 23 chrX 136101522 136101682 -26498248 + L1MC4 LINE L1 1995 6983 -1339 374 328 16 0 chrX 136101689 136101817 -26498113 + L1MC4 LINE L1 6573 6702 -1340 338 262 56 0 chrX 136101847 136101954 -26497976 + L1MC4 LINE L1 6614 6726 -1316 803 183 44 18 chrX 136101993 136102328 -26497602 - MER58 DNA MER1_type -4 2416 2 196 294 0 0 chrX 136102551 136102602 -26497328 - L2 LINE L2 -17 3255 3205 1353 96 0 18 chrX 136105097 136105315 -26494615 + L1MA3 LINE L1 6092 6305 0 292 69 0 35 chrX 136108029 136108087 -26491843 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 2034 147 0 0 chrX 136108102 136108408 -26491522 - AluSx SINE Alu -6 306 1 316 288 304 20 chrX 136108777 136109135 -26490795 - L3 LINE CR1 -126 1451 992 1900 154 3 10 chrX 136111064 136111370 -26488560 - AluJb SINE Alu -8 304 1 21 71 0 0 chrX 136112519 136112561 -26487369 + AT_rich Low_complexity Low_complexity 1 42 0 22 79 0 0 chrX 136113367 136113405 -26486525 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chrX 136117110 136117132 -26482798 + AT_rich Low_complexity Low_complexity 1 22 0 201 74 0 0 chrX 136119280 136119307 -26480623 + (TTGTG)n Simple_repeat Simple_repeat 4 30 0 204 40 0 0 chrX 136120662 136120687 -26479243 + (TA)n Simple_repeat Simple_repeat 1 25 0 207 267 162 29 chrX 136120797 136120902 -26479028 - MIR SINE MIR -67 141 23 273 119 0 0 chrX 136124221 136124263 -26475667 + (CA)n Simple_repeat Simple_repeat 2 43 0 53 146 0 0 chrX 136126038 136126120 -26473810 + AT_rich Low_complexity Low_complexity 1 82 0 21 36 0 0 chrX 136126313 136126341 -26473589 + AT_rich Low_complexity Low_complexity 1 28 0 1922 182 26 56 chrX 136130102 136130569 -26469361 - MER31B LTR ERV1 -13 648 1 2772 170 87 45 chrX 136130596 136131278 -26468652 - MER67C LTR ERV1 0 710 1 2381 114 5 19 chrX 136131390 136131759 -26468171 + THE1B LTR MaLR 1 364 0 188 339 73 40 chrX 136131897 136132021 -26467909 + L2 LINE L2 3172 3299 -14 2262 79 0 10 chrX 136132029 136132332 -26467598 + AluY SINE Alu 1 300 -11 659 233 25 25 chrX 136132703 136132866 -26467064 - MER5A DNA MER1_type -24 165 3 2425 77 0 0 chrX 136133302 136133599 -26466331 + AluY SINE Alu 1 297 -14 475 347 64 46 chrX 136134001 136134538 -26465392 + L2 LINE L2 2699 3239 -33 3832 162 53 45 chrX 136134538 136135267 -26464663 + L1MB3 LINE L1 5279 6019 -164 1821 132 88 44 chrX 136135267 136135676 -26464254 + MSTA LTR MaLR 2 428 0 3832 162 53 45 chrX 136135676 136135843 -26464087 + L1MB3 LINE L1 6019 6183 0 710 276 134 100 chrX 136136450 136137011 -26462919 - MLT1K LTR MaLR -7 581 2 2178 124 7 0 chrX 136137151 136137458 -26462472 - AluSx SINE Alu -3 309 1 662 260 43 43 chrX 136137641 136137899 -26462031 + L1ME1 LINE L1 5906 6163 -3 549 278 97 48 chrX 136138077 136138325 -26461605 + L2 LINE L2 2242 2501 -813 560 368 56 32 chrX 136138421 136138763 -26461167 + L2 LINE L2 2872 3221 -51 1690 124 108 4 chrX 136140075 136140372 -26459558 - AluSx SINE Alu 0 324 1 2379 155 37 9 chrX 136140477 136140934 -26458996 - L1MB2 LINE L1 -21 6150 5681 338 107 0 18 chrX 136141260 136141316 -26458614 + (CA)n Simple_repeat Simple_repeat 2 56 0 959 256 90 54 chrX 136141621 136141719 -26458211 + L1MDb LINE L1 1122 1215 -5372 2019 115 31 10 chrX 136141719 136142007 -26457923 - AluSx SINE Alu -18 294 1 959 256 90 54 chrX 136142007 136142699 -26457231 + L1MDb LINE L1 1215 1992 -4595 942 224 68 76 chrX 136142713 136143433 -26456497 + L1MDb LINE L1 2042 2731 -3675 22 0 0 0 chrX 136143694 136143716 -26456214 + AT_rich Low_complexity Low_complexity 1 22 0 2242 112 0 0 chrX 136144232 136144528 -26455402 - AluSx SINE Alu -16 296 1 897 304 48 41 chrX 136144573 136145013 -26454917 - MLT1K LTR MaLR -4 584 142 487 339 60 9 chrX 136145221 136145454 -26454476 + MIR SINE MIR 2 246 -16 1229 287 60 126 chrX 136145687 136146500 -26453430 + L2 LINE L2 1485 2350 -964 243 0 0 0 chrX 136146500 136146527 -26453403 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1229 287 60 126 chrX 136146527 136146545 -26453385 + L2 LINE L2 2350 2368 -946 622 142 0 50 chrX 136146545 136146665 -26453265 - FLAM_C SINE Alu -26 117 4 1229 287 60 126 chrX 136146665 136147192 -26452738 + L2 LINE L2 2368 2865 -449 533 283 109 26 chrX 136148478 136148743 -26451187 - L1ME3A LINE L1 -235 5935 5649 1301 163 45 10 chrX 136148745 136149034 -26450896 + MER33 DNA MER1_type 4 302 -22 814 279 35 25 chrX 136149069 136149385 -26450545 - L1ME3A LINE L1 -506 5656 5338 434 272 43 43 chrX 136149433 136149690 -26450240 - L1ME3A LINE L1 -854 5292 5036 495 277 43 34 chrX 136149711 136150061 -26449869 - L1ME3A LINE L1 -1616 4530 4178 5342 160 26 18 chrX 136150064 136151851 -26448079 - L1PA16 LINE L1 -9 6157 4365 1482 312 40 24 chrX 136151864 136152936 -26446994 - L1M4 LINE L1 -1128 5018 3930 4210 196 20 13 chrX 136152971 136154144 -26445786 - L1MB7 LINE L1 0 6420 5241 831 208 42 5 chrX 136154155 136154386 -26445544 - L1MB7 LINE L1 -3865 2517 2279 255 267 108 17 chrX 136154382 136154558 -26445372 - L1M4 LINE L1 -3668 2478 2287 * 1808 110 0 0 chrX 136155139 136155385 -26444545 + AluSx SINE Alu 59 304 -8 550 345 129 9 chrX 136155510 136155858 -26444072 + LTR16A LTR ERVL 61 450 0 1246 234 93 42 chrX 136155862 136156302 -26443628 - L1ME2 LINE L1 -90 6074 5658 1835 111 44 11 chrX 136156302 136156619 -26443311 - AluSx SINE Alu 0 328 3 1246 234 93 42 chrX 136156619 136157062 -26442868 - L1ME2 LINE L1 -506 5658 5141 929 141 65 5 chrX 136157208 136157393 -26442537 - MER63 DNA MER1_type -815 246 51 186 43 0 0 chrX 136157395 136157418 -26442512 + (TG)n Simple_repeat Simple_repeat 2 24 0 5047 116 17 25 chrX 136157454 136157817 -26442113 - L1PB4 LINE L1 -1 6155 5791 270 0 0 0 chrX 136157817 136157847 -26442083 + (TG)n Simple_repeat Simple_repeat 2 31 0 5047 116 17 25 chrX 136157847 136158347 -26441583 - L1PB4 LINE L1 -365 5791 5299 5941 197 49 13 chrX 136158349 136159547 -26440383 + L1 LINE L1 3795 5055 -1091 7035 26 1 4 chrX 136159547 136160377 -26439553 + L1PA5 LINE L1 5321 6149 -5 5941 197 49 13 chrX 136160377 136160616 -26439314 + L1 LINE L1 5055 5284 -862 525 245 54 7 chrX 136160623 136160770 -26439160 - L1ME2 LINE L1 -1051 5095 4942 320 292 19 98 chrX 136160883 136161147 -26438783 - L1ME LINE L1 -332 5789 5547 649 252 102 56 chrX 136161686 136161952 -26437978 - MER102b DNA MER1_type -6 335 58 8244 116 10 18 chrX 136162017 136163327 -26436603 - HSMAR2 DNA Mariner -1 1301 2 192 282 90 26 chrX 136164690 136164768 -26435162 - L2 LINE L2 0 3313 3231 368 136 15 0 chrX 136165966 136166032 -26433898 - Alu SINE Alu -2 300 234 1106 177 5 10 chrX 136167088 136167317 -26432613 + AluJo SINE Alu 85 312 0 2509 153 7 45 chrX 136167433 136167876 -26432054 - MSTB LTR MaLR 0 426 1 1287 27 0 0 chrX 136168174 136168322 -26431608 - AluY SINE Alu -1 310 163 12279 36 1 0 chrX 136168322 136170571 -26429359 + L1PA4 LINE L1 3900 6154 -1 1011 148 17 11 chrX 136170583 136170759 -26429171 - MLT1D LTR MaLR -328 177 1 289 348 106 35 chrX 136170905 136171046 -26428884 - L2 LINE L2 0 3272 3122 2104 303 36 19 chrX 136171400 136172369 -26427561 + L1MEc LINE L1 44 1029 -5367 6524 145 51 8 chrX 136172372 136173458 -26426472 + L1MB1 LINE L1 1 1132 -4759 1486 107 0 0 chrX 136173458 136173654 -26426276 + AluSq SINE Alu 1 196 -117 3402 162 49 26 chrX 136173657 136174481 -26425449 + L1MB1 LINE L1 4743 5635 -357 357 24 0 0 chrX 136174481 136174523 -26425407 + (CA)n Simple_repeat Simple_repeat 1 42 0 3402 162 49 26 chrX 136174523 136174889 -26425041 + L1MB1 LINE L1 5635 5991 -1 24 0 0 0 chrX 136174889 136174913 -26425017 + AT_rich Low_complexity Low_complexity 1 24 0 352 262 22 4 chrX 136175247 136175371 -26424559 + L1MEc LINE L1 974 1128 -5113 264 211 70 42 chrX 136175749 136175820 -26424110 - L2 LINE L2 -4 3309 3237 956 226 81 8 chrX 136176775 136177009 -26422921 + MER69 DNA AcHobo 5 255 -2271 623 256 18 6 chrX 136177419 136177583 -26422347 + L1MEc LINE L1 36 201 -6195 3767 237 66 45 chrX 136177584 136178347 -26421583 + L1MEc LINE L1 252 1014 -5201 2192 126 0 0 chrX 136178347 136178649 -26421281 + AluSx SINE Alu 1 302 -10 3767 237 66 45 chrX 136178649 136179165 -26420765 + L1MEc LINE L1 1014 1518 -4697 8257 126 14 5 chrX 136179170 136181521 -26418409 + ERVL LTR ERVL 2846 5399 -365 193 390 0 0 chrX 136182666 136182725 -26417205 + L2 LINE L2 3127 3185 -87 484 289 13 26 chrX 136182835 136182987 -26416943 + MIR3 SINE MIR 59 208 0 203 177 32 32 chrX 136183544 136183606 -26416324 + (CAGAGA)n Simple_repeat Simple_repeat 2 63 0 206 83 0 56 chrX 136183844 136183880 -26416050 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 241 359 68 29 chrX 136184038 136184389 -26415541 + L2 LINE L2 2259 2623 -691 304 339 0 17 chrX 136184419 136184537 -26415393 + L2 LINE L2 2543 2658 -656 655 205 0 0 chrX 136184560 136184677 -26415253 - Tigger1 DNA MER2_type -1 2417 2301 4740 196 25 5 chrX 136184678 136185731 -26414199 + L1PB3 LINE L1 4126 5199 -947 42833 53 0 1 chrX 136185736 136191885 -26408045 + L1PA5 LINE L1 11 6154 0 442 19 0 0 chrX 136191887 136191941 -26407989 + L1PA3 LINE L1 6099 6152 -3 5626 113 24 14 chrX 136191956 136192903 -26407027 + L1PB3 LINE L1 5200 6154 0 11357 112 18 2 chrX 136193245 136194946 -26404984 - Tigger1 DNA MER2_type -103 2315 588 760 192 52 0 chrX 136194947 136195119 -26404811 + L1MB7 LINE L1 4122 4302 -1844 * 985 75 0 23 chrX 136195117 136195250 -26404680 - L1P1 LINE L1 -345 5810 5681 459 94 0 0 chrX 136195221 136195285 -26404645 + L1PA6 LINE L1 6091 6154 0 * 2950 188 49 7 chrX 136195268 136196593 -26403337 + L1MB7 LINE L1 4271 5689 -495 11866 164 21 19 chrX 136196606 136198702 -26401228 + L1MA1 LINE L1 19 2119 -5446 * 14390 148 21 9 chrX 136198695 136202181 -26397749 + L1MA1 LINE L1 4081 7616 -105 1873 161 20 3 chrX 136202182 136202523 -26397407 + L1MB7 LINE L1 5679 6025 -159 2225 166 8 0 chrX 136202523 136202873 -26397057 + MER47A DNA MER2_type 1 354 -7 851 167 77 0 chrX 136202873 136203041 -26396889 + L1MB7 LINE L1 6003 6183 -1 413 364 49 52 chrX 136203228 136203574 -26396356 + L2 LINE L2 2928 3272 0 250 236 18 0 chrX 136204229 136204284 -26395646 + HERV16 LTR ERVL 1074 1129 -3867 1233 165 18 107 chrX 136204290 136204562 -26395368 + MLT2C2 LTR ERVL 217 464 0 469 281 170 0 chrX 136205833 136205986 -26393944 - MER5A DNA MER1_type 0 189 11 272 312 54 98 chrX 136206086 136206665 -26393265 - L2 LINE L2 -100 3172 2618 2189 120 0 0 chrX 136206688 136206987 -26392943 - AluSx SINE Alu -13 299 1 879 308 90 53 chrX 136206991 136207612 -26392318 - L2 LINE L2 -15 3257 2582 1878 134 0 4 chrX 136207612 136207880 -26392050 + AluSx SINE Alu 1 267 -45 879 308 90 53 chrX 136207880 136208280 -26391650 - L2 LINE L2 -690 2582 2199 449 235 176 65 chrX 136209586 136209885 -26390045 - MLT1H LTR MaLR 0 555 187 2009 119 0 77 chrX 136209885 136210238 -26389692 + MER1B DNA MER1_type 1 326 -13 1633 124 6 108 chrX 136210240 136210404 -26389526 - MER1B DNA MER1_type -2373 339 221 2365 110 0 0 chrX 136210404 136210712 -26389218 + AluSg SINE Alu 1 308 -2 1633 124 6 108 chrX 136210712 136210862 -26389068 - MER1B DNA MER1_type -2491 221 57 384 271 16 67 chrX 136210875 136211072 -26388858 - MLT1F LTR MaLR -359 196 6 25 0 0 0 chrX 136211441 136211466 -26388464 + AT_rich Low_complexity Low_complexity 1 25 0 465 309 211 26 chrX 136211716 136212105 -26387825 - L2 LINE L2 -2 3270 2810 410 260 110 8 chrX 136212195 136212322 -26387608 + MIR SINE MIR 46 185 -77 699 268 90 53 chrX 136212326 136212376 -26387554 - L1M4c LINE L1 -973 1603 1556 1673 213 101 56 chrX 136212376 136212650 -26387280 - MLT1D LTR MaLR 0 505 198 194 0 39 0 chrX 136212650 136212676 -26387254 + (TTG)n Simple_repeat Simple_repeat 3 29 0 1673 213 101 56 chrX 136212676 136212884 -26387046 - MLT1D LTR MaLR -307 198 1 699 268 90 53 chrX 136212884 136213550 -26386380 - L1M4c LINE L1 -1020 1556 798 882 174 0 0 chrX 136214311 136214443 -26385487 - FLAM_C SINE Alu 0 133 2 557 130 0 11 chrX 136214455 136214547 -26385383 - L1MA9 LINE L1 -69 6243 6153 879 92 4 18 chrX 136214548 136214799 -26385131 - AluJb SINE Alu -7 305 9 5142 138 27 9 chrX 136214811 136215823 -26384107 - L1MA9 LINE L1 -147 6165 5134 594 304 26 45 chrX 136215835 136215906 -26384024 - L2 LINE L2 -574 2740 2669 2234 168 18 23 chrX 136215906 136216298 -26383632 - MLT1B LTR MaLR 0 390 1 594 304 26 45 chrX 136216298 136216538 -26383392 - L2 LINE L2 -645 2669 2435 394 181 0 0 chrX 136216789 136216861 -26383069 + MLT1B LTR MaLR 179 250 -140 754 268 96 62 chrX 136217425 136217873 -26382057 + MLT1J LTR MaLR 1 463 -48 209 358 33 58 chrX 136218231 136218351 -26381579 + L2 LINE L2 3005 3121 -151 2133 126 0 13 chrX 136218451 136218761 -26381169 - AluSx SINE Alu -6 306 1 445 272 46 11 chrX 136219016 136219190 -26380740 + MIR3 SINE MIR 14 195 -13 2399 82 3 25 chrX 136220529 136220847 -26379083 + AluY SINE Alu 1 311 0 258 32 0 0 chrX 136221098 136221129 -26378801 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 333 217 0 29 chrX 136221134 136221203 -26378727 - Alu SINE Alu -6 294 228 1556 229 123 89 chrX 136221352 136221774 -26378156 - HAL1 LINE L1 -4 2503 2097 1697 164 19 45 chrX 136221774 136222085 -26377845 + AluJo SINE Alu 1 303 -9 1556 229 123 89 chrX 136222085 136222578 -26377352 - HAL1 LINE L1 -410 2097 1557 1603 173 33 0 chrX 136222579 136222850 -26377080 - AluJb SINE Alu -12 300 21 2562 137 2 13 chrX 136222850 136223245 -26376685 - L1PA16 LINE L1 -6 6160 5770 6096 121 0 2 chrX 136223246 136224614 -26375316 - L1PA15 LINE L1 -1 6164 4786 2541 139 9 35 chrX 136224617 136225048 -26374882 - L1PA16 LINE L1 -379 5787 5368 492 254 28 14 chrX 136225066 136225208 -26374722 - HAL1 LINE L1 -1590 917 774 2664 223 37 26 chrX 136225441 136226060 -26373870 - MLT1E2 LTR MaLR 0 626 1 44774 42 3 0 chrX 136226182 136232315 -26367615 + L1PA4 LINE L1 4 6152 -3 2107 114 86 17 chrX 136234600 136234951 -26364979 - THE1C LTR MaLR 0 375 1 565 284 70 89 chrX 136235048 136235488 -26364442 + L2 LINE L2 2836 3267 -5 239 224 0 0 chrX 136235756 136235805 -26364125 + L2 LINE L2 3264 3312 -1 23 54 0 0 chrX 136235993 136236030 -26363900 + AT_rich Low_complexity Low_complexity 1 37 0 223 310 58 0 chrX 136236249 136236336 -26363594 + MIR SINE MIR 75 166 -96 329 26 0 0 chrX 136236767 136236836 -26363094 + AluSp/q SINE Alu 243 311 0 450 211 27 75 chrX 136236838 136236937 -26362993 + MARNA DNA Mariner 181 272 -314 2079 156 0 0 chrX 136236937 136237238 -26362692 - AluSx SINE Alu -11 301 1 450 211 27 75 chrX 136237238 136237285 -26362645 + MARNA DNA Mariner 272 320 -266 1092 175 204 26 chrX 136237433 136237741 -26362189 + MLT1A1 LTR MaLR 1 363 -2 2203 105 14 0 chrX 136237981 136238276 -26361654 + AluSx SINE Alu 1 299 -13 1966 140 0 0 chrX 136238292 136238563 -26361367 + AluJb SINE Alu 1 271 -41 24 32 0 0 chrX 136238584 136238615 -26361315 + AT_rich Low_complexity Low_complexity 1 31 0 186 302 269 34 chrX 136238694 136238843 -26361087 - MIR3 SINE MIR 0 208 25 22 0 0 0 chrX 136239406 136239428 -26360502 + AT_rich Low_complexity Low_complexity 1 22 0 2516 43 0 55 chrX 136239509 136239838 -26360092 - AluY SINE Alu 0 311 1 2470 148 54 43 chrX 136240492 136240958 -26358972 + L1MC3 LINE L1 7291 7761 -24 302 252 101 17 chrX 136240962 136241081 -26358849 + L1ME4a LINE L1 5991 6119 -2 631 251 11 8 chrX 136241700 136241886 -26358044 - L1M3 LINE L1 -646 5534 5350 212 252 131 9 chrX 136242210 136242317 -26357613 - L2 LINE L2 -89 3224 3105 8932 197 25 22 chrX 136242441 136244411 -26355519 + L1MB7 LINE L1 3296 5269 -909 2042 139 175 11 chrX 136244411 136244777 -26355153 + MSTA LTR MaLR 3 428 0 8932 197 25 22 chrX 136244777 136245172 -26354758 + L1MB7 LINE L1 5269 5662 -516 990 134 40 7 chrX 136245172 136245321 -26354609 + AluSx SINE Alu 1 147 -165 524 47 0 0 chrX 136245313 136245386 -26354544 + L1PA11 LINE L1 6003 6075 -99 * 1193 104 0 0 chrX 136245386 136245540 -26354390 + AluSx SINE Alu 150 303 -9 2189 145 60 31 chrX 136245547 136245692 -26354238 + L1MB7 LINE L1 5653 5792 -392 225 0 0 0 chrX 136245692 136245717 -26354213 + (TATAA)n Simple_repeat Simple_repeat 4 28 0 2189 145 60 31 chrX 136245717 136245985 -26353945 + L1MB7 LINE L1 5792 6078 -106 1497 70 10 0 chrX 136245985 136246184 -26353746 + L1PA11 LINE L1 5973 6173 -1 541 129 40 20 chrX 136246184 136246285 -26353645 + L1MB8 LINE L1 6067 6169 -9 1453 268 114 16 chrX 136246430 136247181 -26352749 - L2 LINE L2 -22 3291 2385 1768 185 0 0 chrX 136247183 136247464 -26352466 + AluJo SINE Alu 1 281 -31 583 221 13 0 chrX 136247464 136247622 -26352308 + GA-rich Low_complexity Low_complexity 1 160 0 679 207 32 74 chrX 136247624 136247750 -26352180 - L2 LINE L2 -918 2396 2281 2214 118 0 53 chrX 136247750 136248105 -26351825 - MER1B DNA MER1_type -1 336 1 679 207 32 74 chrX 136248105 136248195 -26351735 - L2 LINE L2 -1033 2281 2189 255 388 73 45 chrX 136248250 136248630 -26351300 - L2 LINE L2 -464 2850 2455 2218 164 57 0 chrX 136248630 136249033 -26350897 + MSTA LTR MaLR 3 428 0 255 388 73 45 chrX 136249033 136249093 -26350837 - L2 LINE L2 -859 2455 2398 23 0 0 0 chrX 136249593 136249616 -26350314 + AT_rich Low_complexity Low_complexity 1 23 0 1980 121 0 66 chrX 136249638 136249970 -26349960 + AluJo SINE Alu 1 310 -2 437 245 233 31 chrX 136250759 136250922 -26349008 + MIR SINE MIR 60 255 -7 749 283 29 5 chrX 136251296 136251501 -26348429 + MIR SINE MIR 40 249 -13 1794 131 10 38 chrX 136251509 136251819 -26348111 + AluSx SINE Alu 1 302 0 211 273 169 0 chrX 136251976 136252053 -26347877 - MIR SINE MIR -1 261 172 568 278 111 15 chrX 136252153 136252351 -26347579 - MIR SINE MIR -1 261 45 294 276 272 52 chrX 136252483 136252715 -26347215 + L2 LINE L2 2990 3272 0 842 203 31 0 chrX 136252775 136252938 -26346992 + MER5A DNA MER1_type 1 168 -21 271 206 48 0 chrX 136253476 136253539 -26346391 + L1ME4a LINE L1 5964 6029 -92 351 242 150 8 chrX 136254359 136254479 -26345451 - MIR SINE MIR -13 249 113 498 283 154 24 chrX 136254592 136254885 -26345045 + L1MC/D LINE L1 5467 5797 -2011 1769 155 40 0 chrX 136254893 136255017 -26344913 + AluJo SINE Alu 1 119 -193 189 0 0 0 chrX 136255017 136255038 -26344892 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 1769 155 40 0 chrX 136255038 136255191 -26344739 + AluJo SINE Alu 119 289 -23 21 0 0 0 chrX 136255259 136255280 -26344650 + AT_rich Low_complexity Low_complexity 1 21 0 738 283 73 20 chrX 136255474 136255721 -26344209 - MIR SINE MIR 0 262 3 320 290 28 21 chrX 136256111 136256256 -26343674 - L1MC4a LINE L1 -1880 5928 5783 277 109 36 0 chrX 136256258 136256313 -26343617 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 255 270 0 0 chrX 136256336 136256410 -26343520 - L1MC4a LINE L1 -2046 5762 5689 342 0 0 0 chrX 136258217 136258255 -26341675 + (TGGGGG)n Simple_repeat Simple_repeat 5 42 0 313 276 112 87 chrX 136258325 136258521 -26341409 - L1M2 LINE L1 -5894 955 755 211 343 10 0 chrX 136258882 136258984 -26340946 + C-rich Low_complexity Low_complexity 1 103 0 207 170 19 38 chrX 136259790 136259843 -26340087 + C-rich Low_complexity Low_complexity 6 57 0 24 32 0 0 chrX 136262860 136262891 -26337039 + AT_rich Low_complexity Low_complexity 1 31 0 917 178 65 11 chrX 136265140 136265325 -26334605 - MER20 DNA MER1_type -24 195 1 29 47 0 0 chrX 136266027 136266070 -26333860 + AT_rich Low_complexity Low_complexity 1 43 0 1748 174 0 21 chrX 136267387 136267675 -26332255 + AluJo SINE Alu 1 282 -30 86 71 0 0 chrX 136267677 136267847 -26332083 + AT_rich Low_complexity Low_complexity 1 170 0 256 271 42 31 chrX 136269382 136269478 -26330452 - MIR SINE MIR -82 180 84 225 138 62 108 chrX 136269624 136269689 -26330241 + L3 LINE CR1 951 1012 -565 226 228 25 38 chrX 136270049 136270128 -26329802 + L2 LINE L2 3232 3309 -4 198 103 0 0 chrX 136270128 136270157 -26329773 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 251 89 67 0 chrX 136270158 136270203 -26329727 + T-rich Low_complexity Low_complexity 2 49 0 409 172 0 0 chrX 136270206 136270270 -26329660 - AluJ/FLAM SINE Alu -248 64 1 201 74 0 0 chrX 136270537 136270564 -26329366 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chrX 136271026 136271047 -26328883 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chrX 136271349 136271373 -26328557 + (T)n Simple_repeat Simple_repeat 1 24 0 504 0 0 0 chrX 136272791 136272847 -26327083 + (TC)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chrX 136273534 136273565 -26326365 + AT_rich Low_complexity Low_complexity 1 31 0 1879 143 7 17 chrX 136273678 136273971 -26325959 - AluJo SINE Alu -22 290 1 23 33 0 0 chrX 136273998 136274028 -26325902 + AT_rich Low_complexity Low_complexity 1 30 0 252 284 39 29 chrX 136274733 136274835 -26325095 - MIR SINE MIR -54 208 106 336 292 97 0 chrX 136275392 136275505 -26324425 + L2 LINE L2 3181 3304 -9 1793 113 12 4 chrX 136276253 136276509 -26323421 - AluSx SINE Alu -19 293 36 423 312 60 90 chrX 136277459 136278173 -26321757 - L2 LINE L2 -16 3256 2552 276 301 113 63 chrX 136278204 136278504 -26321426 + L2 LINE L2 2709 3022 -250 3736 7 0 2 chrX 136278917 136279342 -26320588 - L1PA2 LINE L1 0 6155 5732 266 350 137 23 chrX 136279342 136279639 -26320291 + L2 LINE L2 2642 2976 -338 204 283 183 8 chrX 136279676 136279796 -26320134 + L2 LINE L2 3168 3308 -5 3456 116 160 91 chrX 136281057 136281826 -26318104 - LTR12 LTR ERV1 0 826 5 2530 155 45 25 chrX 136281841 136282434 -26317496 - pTR5 LTR ERV1 -1093 1345 741 240 279 0 0 chrX 136282541 136282620 -26317310 + L1ME4a LINE L1 4735 4813 -1333 2101 141 166 24 chrX 136282739 136282958 -26316972 - LTR64 LTR ERVK 0 558 372 2386 90 0 3 chrX 136282958 136283258 -26316672 + AluSx SINE Alu 1 299 -13 2101 141 166 24 chrX 136283258 136283507 -26316423 - LTR64 LTR ERVK -186 372 23 449 252 111 11 chrX 136283764 136283941 -26315989 + L1ME4a LINE L1 5274 5465 -656 255 260 61 40 chrX 136284001 136284200 -26315730 - L1MCa LINE L1 -4572 1854 1718 * 940 91 56 0 chrX 136284190 136284333 -26315597 + L1PA16 LINE L1 5776 5926 -240 359 302 34 67 chrX 136284329 136284597 -26315333 - L1MCa LINE L1 -5597 819 561 * 222 164 75 30 chrX 136284778 136284845 -26315085 + (CATATA)n Simple_repeat Simple_repeat 4 73 0 521 270 114 55 chrX 136284941 136285378 -26314552 + L1ME4a LINE L1 5458 5920 -201 261 0 0 0 chrX 136285427 136285456 -26314474 + (CA)n Simple_repeat Simple_repeat 2 30 0 1200 201 146 3 chrX 136285456 136285744 -26314186 + MER2 DNA MER2_type 7 335 -10 405 164 0 0 chrX 136285769 136285842 -26314088 + (TA)n Simple_repeat Simple_repeat 1 73 0 295 257 118 7 chrX 136285942 136286086 -26313844 - MER2 DNA MER2_type -10 335 176 387 0 0 0 chrX 136286086 136286129 -26313801 + (TG)n Simple_repeat Simple_repeat 2 44 0 303 28 0 0 chrX 136286621 136286657 -26313273 + (CA)n Simple_repeat Simple_repeat 1 36 0 562 264 49 49 chrX 136287103 136287266 -26312664 + MER91A DNA MER1_type 1 163 -33 254 294 73 0 chrX 136287301 136287369 -26312561 + MER91A DNA MER1_type 124 196 0 401 202 165 37 chrX 136287433 136287542 -26312388 + L2 LINE L2 3186 3308 -5 209 317 0 42 chrX 136287954 136288121 -26311809 + (CATATA)n Simple_repeat Simple_repeat 5 164 0 379 335 168 14 chrX 136288579 136289022 -26310908 - L2 LINE L2 -213 3059 2531 603 312 150 21 chrX 136289024 136289364 -26310566 - L2 LINE L2 -452 2862 2479 194 0 39 0 chrX 136289430 136289456 -26310474 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 340 259 154 35 chrX 136289723 136289924 -26310006 - MIR SINE MIR -24 238 14 349 182 22 231 chrX 136289926 136289992 -26309938 + MER5B DNA MER1_type 1 79 -99 2586 185 34 20 chrX 136289992 136290582 -26309348 - L1MB8 LINE L1 -9 6169 5572 349 182 22 231 chrX 136290582 136290740 -26309190 + MER5B DNA MER1_type 79 178 0 180 246 62 31 chrX 136291598 136291663 -26308267 - MER5B DNA MER1_type -79 99 33 445 262 83 52 chrX 136291750 136291946 -26307984 - MIR3 SINE MIR -50 212 6 728 255 0 0 chrX 136292019 136292168 -26307762 + FRAM SINE Alu 5 153 -13 850 280 53 28 chrX 136292608 136292926 -26307004 + L2 LINE L2 2267 2592 -722 2740 78 16 16 chrX 136293270 136293643 -26306287 + THE1C LTR MaLR 3 375 0 2134 98 0 4 chrX 136293873 136294149 -26305781 + AluSq SINE Alu 17 291 -22 514 260 13 77 chrX 136294270 136294505 -26305425 + L2 LINE L2 3094 3313 0 1169 337 174 15 chrX 136295054 136296028 -26303902 - L2 LINE L2 -338 2976 1848 4276 64 2 9 chrX 136296113 136296674 -26303256 - L1PA10 LINE L1 0 6168 5612 1690 219 38 14 chrX 136297440 136297883 -26302047 + MLT1C LTR MaLR 1 454 -13 1651 107 42 58 chrX 136298336 136298646 -26301284 - L1MC2 LINE L1 -9 6335 6031 4061 137 18 0 chrX 136298778 136299436 -26300494 - L1MC2 LINE L1 -248 6096 5427 952 205 0 0 chrX 136299934 136300134 -26299796 + L1MB4 LINE L1 5847 6046 -134 23 0 0 0 chrX 136300224 136300247 -26299683 + AT_rich Low_complexity Low_complexity 1 23 0 253 135 0 77 chrX 136300872 136300924 -26299006 + MIR3 SINE MIR 149 196 -12 428 358 94 69 chrX 136301161 136302078 -26297852 + L2 LINE L2 2034 2973 -341 1445 216 25 41 chrX 136302239 136302604 -26297326 + MLT1J LTR MaLR 1 359 -152 189 326 11 11 chrX 136302606 136302695 -26297235 + L2 LINE L2 2191 2279 -1035 668 285 15 44 chrX 136303201 136303471 -26296459 + MIR SINE MIR 1 262 0 412 316 53 78 chrX 136303485 136303729 -26296201 - L2 LINE L2 -61 3211 2974 363 281 16 124 chrX 136305327 136305512 -26294418 + MIR SINE MIR 28 192 -70 504 233 42 8 chrX 136305943 136306063 -26293867 + L2 LINE L2 3188 3311 -2 739 112 0 0 chrX 136306092 136306223 -26293707 + L1PA10 LINE L1 6041 6171 0 498 287 61 85 chrX 136306685 136306932 -26292998 + MIR SINE MIR 8 248 -14 572 263 151 43 chrX 136307181 136307413 -26292517 + MIR SINE MIR 2 258 -4 2264 104 0 31 chrX 136307475 136307793 -26292137 + AluSx SINE Alu 1 308 -4 646 273 115 25 chrX 136308004 136308290 -26291640 - LTR16A1 LTR ERVL 0 457 146 3622 125 68 59 chrX 136308392 136308465 -26291465 + L1MC1 LINE L1 5571 5642 -691 1785 201 10 0 chrX 136308465 136308774 -26291156 - AluJo SINE Alu 0 312 1 3622 125 68 59 chrX 136308774 136309366 -26290564 + L1MC1 LINE L1 5642 6246 -87 2215 132 9 20 chrX 136309366 136309707 -26290223 - MER1B DNA MER1_type 0 337 1 3622 125 68 59 chrX 136309707 136309785 -26290145 + L1MC1 LINE L1 6246 6322 -11 310 330 82 0 chrX 136309907 136310004 -26289926 - MIR SINE MIR -110 152 48 733 308 34 41 chrX 136310110 136310525 -26289405 + MLT1K LTR MaLR 171 582 -6 300 258 66 42 chrX 136310760 136310780 -26289150 - L1MA10 LINE L1 -1 6333 6314 2465 218 59 31 chrX 136310780 136311756 -26288174 - L1ME2 LINE L1 -10 6652 5657 2076 116 27 48 chrX 136311812 136312184 -26287746 - THE1B LTR MaLR 0 364 1 11664 96 2 11 chrX 136312184 136313778 -26286152 - THE1B-int LTR MaLR 0 1580 1 2055 110 30 54 chrX 136313778 136314151 -26285779 - THE1B LTR MaLR 0 364 1 40467 34 24 1 chrX 136314195 136320208 -26279722 + L1PA2 LINE L1 4 6155 0 3709 202 25 55 chrX 136320300 136320872 -26279058 - L1ME2 LINE L1 -1163 5481 4894 2058 116 0 0 chrX 136320872 136321139 -26278791 + AluSx SINE Alu 1 267 -45 3709 202 25 55 chrX 136321139 136321175 -26278755 - L1ME2 LINE L1 -1750 4894 4858 1703 174 7 20 chrX 136321175 136321469 -26278461 - AluJo SINE Alu -18 294 5 3709 202 25 55 chrX 136321469 136322016 -26277914 - L1ME2 LINE L1 -1786 4858 4359 1747 212 33 56 chrX 136322018 136322533 -26277397 - MLT1D LTR MaLR -2 503 1 818 248 44 103 chrX 136322537 136322945 -26276985 - MLT1D-int LTR MaLR -4 1367 984 878 257 5 5 chrX 136323093 136323311 -26276619 - MLT1D-int LTR MaLR -491 880 663 2021 207 74 78 chrX 136323368 136323752 -26276178 - MLT1D-int LTR MaLR -712 659 278 1335 86 66 0 chrX 136323752 136323949 -26275981 - L1PA13 LINE L1 -4 6159 5950 2021 207 74 78 chrX 136323949 136324226 -26275704 - MLT1D-int LTR MaLR -1093 278 1 2198 186 23 39 chrX 136324226 136324738 -26275192 - MLT1D LTR MaLR 0 505 2 1881 254 100 22 chrX 136324739 136325612 -26274318 - L1ME2 LINE L1 -2286 4358 3418 210 303 0 53 chrX 136325629 136325705 -26274225 - L2 LINE L2 -9 3263 3192 452 197 82 11 chrX 136326244 136326427 -26273503 - L1ME2 LINE L1 -3213 3431 3236 2210 244 52 9 chrX 136326438 136327227 -26272703 - L1M4 LINE L1 -3241 3141 2318 446 99 0 0 chrX 136327343 136327414 -26272516 - Tigger3(Golem) DNA MER2_type -2757 272 202 1765 20 0 0 chrX 136327414 136327618 -26272312 - L1PA2 LINE L1 -4 6151 5948 2261 251 24 33 chrX 136327622 136328102 -26271828 - L1ME2 LINE L1 -4330 2495 2012 198 0 0 0 chrX 136328102 136328124 -26271806 + (TC)n Simple_repeat Simple_repeat 1 22 0 2261 251 24 33 chrX 136328124 136328976 -26270954 - L1ME2 LINE L1 -4813 2012 1014 209 33 33 0 chrX 136328999 136329029 -26270901 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 345 297 26 15 chrX 136329698 136329893 -26270037 - L1ME2 LINE L1 -6307 235 39 800 257 32 6 chrX 136329925 136330240 -26269690 - L1M4 LINE L1 -1817 4329 4007 323 222 123 12 chrX 136330333 136330414 -26269516 + MIR3 SINE MIR 67 156 -52 287 242 45 8 chrX 136330719 136330851 -26269079 + (TA)n Simple_repeat Simple_repeat 1 137 0 2322 136 3 0 chrX 136330853 136331198 -26268732 - MER7A DNA MER2_type -2 344 1 216 0 0 0 chrX 136331209 136331233 -26268697 + (TA)n Simple_repeat Simple_repeat 2 25 0 1782 175 0 7 chrX 136331318 136331610 -26268320 - AluJb SINE Alu -14 298 9 340 213 32 32 chrX 136332395 136332489 -26267441 - MIR SINE MIR -10 252 159 655 241 6 19 chrX 136332496 136332654 -26267276 + FRAM SINE Alu 1 155 -21 288 293 13 0 chrX 136332657 136332732 -26267198 - MIR SINE MIR -59 149 74 428 339 18 20 chrX 136333019 136333462 -26266468 + L1ME4a LINE L1 4034 4475 -1671 415 266 37 78 chrX 136333596 136333884 -26266046 + L1MC5 LINE L1 7356 7617 -344 2522 124 45 9 chrX 136333884 136334303 -26265627 - Tigger2a DNA MER2_type 0 434 1 415 266 37 78 chrX 136334303 136334499 -26265431 + L1MC5 LINE L1 7617 7820 -141 1834 167 14 30 chrX 136334515 136334536 -26265394 - MLT1B LTR MaLR 0 390 370 2682 147 27 9 chrX 136334536 136334984 -26264946 - MSTB2 LTR MaLR 0 457 2 1834 167 14 30 chrX 136334984 136335333 -26264597 - MLT1B LTR MaLR -20 370 26 2099 125 0 0 chrX 136335448 136335754 -26264176 + AluSg SINE Alu 1 306 0 319 292 80 40 chrX 136335919 136336268 -26263662 + L1ME4a LINE L1 4672 5034 -1112 4978 140 20 22 chrX 136336573 136337552 -26262378 + L1PB4 LINE L1 5175 6149 -7 270 0 0 0 chrX 136337573 136337603 -26262327 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 40208 35 26 0 chrX 136337603 136343543 -26256387 - L1PA3 LINE L1 -10 6145 49 1960 111 0 63 chrX 136343661 136343977 -26255953 + AluSx SINE Alu 1 296 -16 362 241 119 33 chrX 136343979 136344162 -26255768 + L1ME4a LINE L1 5364 5530 -591 2310 138 13 8 chrX 136344162 136344545 -26255385 - MLT1B LTR MaLR -2 388 4 362 241 119 33 chrX 136344545 136344976 -26254954 + L1ME4a LINE L1 5530 6020 -101 396 277 54 65 chrX 136346845 136347029 -26252901 - MER5A DNA MER1_type -1 188 7 1505 219 123 19 chrX 136347043 136347716 -26252214 - Charlie2 DNA MER1_type 0 2862 2072 276 225 217 0 chrX 136347720 136347849 -26252081 + L1MC4a LINE L1 6011 6167 -1641 315 155 29 0 chrX 136347890 136347993 -26251937 + (TA)n Simple_repeat Simple_repeat 1 106 0 450 0 0 0 chrX 136347996 136348046 -26251884 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 444 82 0 0 chrX 136350231 136350292 -26249638 + (ATG)n Simple_repeat Simple_repeat 2 62 0 446 280 17 45 chrX 136350334 136350519 -26249411 - MIR SINE MIR -50 212 36 263 237 0 0 chrX 136351431 136351490 -26248440 - L2 LINE L2 0 3313 3255 372 299 28 9 chrX 136353051 136353158 -26246772 + MIR SINE MIR 32 140 -68 339 349 40 13 chrX 136353802 136353951 -26245979 - L2 LINE L2 -816 2498 2346 409 332 75 5 chrX 136353983 136354182 -26245748 + MIR SINE MIR 32 244 -18 209 125 0 25 chrX 136354588 136354628 -26245302 + (TAA)n Simple_repeat Simple_repeat 1 39 0 607 224 51 39 chrX 136354721 136354877 -26245053 + MIR SINE MIR 100 257 -5 492 258 35 44 chrX 136354954 136355108 -26244822 - MIR SINE MIR -21 187 28 278 352 57 57 chrX 136357141 136357442 -26242488 - L2 LINE L2 -1 3312 3012 2385 108 103 16 chrX 136357671 136358058 -26241872 + MER61C LTR ERV1 14 434 0 281 316 10 31 chrX 136358074 136358199 -26241731 - MIR SINE MIR -66 142 20 305 231 40 95 chrX 136358431 136358619 -26241311 + L1P4 LINE L1 5628 5804 -364 250 267 43 35 chrX 136358696 136358812 -26241118 + L1ME4a LINE L1 6004 6120 -1 627 160 67 0 chrX 136358864 136358983 -26240947 + L1MA8 LINE L1 6160 6286 -5 938 236 68 21 chrX 136359194 136359431 -26240499 - MIR SINE MIR -2 260 13 188 35 35 0 chrX 136359487 136359516 -26240414 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2183 92 7 0 chrX 136359525 136359807 -26240123 - L1PA10 LINE L1 -11 6157 5874 210 233 0 0 chrX 136360120 136360163 -26239767 + L2 LINE L2 3268 3310 -3 26 0 0 0 chrX 136361765 136361791 -26238139 + AT_rich Low_complexity Low_complexity 1 26 0 255 226 151 0 chrX 136361817 136361910 -26238020 - L1ME4a LINE L1 -29 6092 5986 2555 64 3 21 chrX 136362383 136362713 -26237217 + L1MA1 LINE L1 5979 6302 0 670 226 10 15 chrX 136362845 136363015 -26236915 + MIR3 SINE MIR 7 177 -31 940 163 0 0 chrX 136364916 136365057 -26234873 + AluJb SINE Alu 1 141 -171 219 167 17 33 chrX 136365075 136365135 -26234795 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1574 197 48 0 chrX 136365156 136365451 -26234479 - AluJo SINE Alu -3 309 1 219 330 51 17 chrX 136365989 136366107 -26233823 + L2 LINE L2 2552 2673 -641 641 225 144 0 chrX 136366120 136366280 -26233650 + MER5A DNA MER1_type 7 189 0 538 285 58 86 chrX 136366434 136366851 -26233079 + L2 LINE L2 2860 3264 -8 1870 124 73 34 chrX 136367340 136367696 -26232234 - THE1C LTR MaLR -5 370 1 556 273 0 0 chrX 136367699 136367827 -26232103 - MER94 DNA DNA -3 131 4 319 234 0 0 chrX 136367831 136367895 -26232035 - MIR SINE MIR -3 259 196 1343 170 46 35 chrX 136367930 136368212 -26231718 - L1MB7 LINE L1 -19 6165 5881 592 262 14 7 chrX 136368219 136368360 -26231570 - MIR SINE MIR -119 143 2 796 241 96 40 chrX 136368372 136368549 -26231381 - MARNA DNA Mariner -135 451 285 1306 240 39 75 chrX 136368549 136368937 -26230993 + MLT1A2 LTR MaLR 1 374 0 796 241 96 40 chrX 136368937 136369083 -26230847 - MARNA DNA Mariner -301 285 110 6772 84 3 2 chrX 136369312 136370948 -26228982 - L1PA14 LINE L1 -4 6157 4538 2337 64 0 4 chrX 136371623 136371943 -26227987 - AluY SINE Alu 0 319 1 312 246 50 40 chrX 136372031 136372171 -26227759 - L1ME4a LINE L1 -18 6072 1194 829 187 12 18 chrX 136372204 136372370 -26227560 - MIR SINE MIR -22 240 76 250 259 37 0 chrX 136372437 136372491 -26227439 - L2 LINE L2 0 3272 3217 195 288 17 17 chrX 136372558 136372617 -26227313 - MIR SINE MIR -154 108 50 423 0 0 0 chrX 136372820 136372867 -26227063 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 203 297 16 16 chrX 136373734 136373798 -26226132 + L3b LINE CR1 1432 1495 -88 564 325 68 46 chrX 136374737 136375149 -26224781 - L2 LINE L2 -10 3262 2842 2195 122 0 0 chrX 136375922 136376208 -26223722 + AluSx SINE Alu 1 286 -26 2147 165 60 20 chrX 136377363 136377838 -26222092 + L1MB3 LINE L1 5551 6024 -159 853 174 15 92 chrX 136378427 136378622 -26221308 + MLT1A1 LTR MaLR 15 194 -171 4112 218 35 25 chrX 136378781 136379667 -26220263 + MLT1A1-int LTR MaLR 841 1735 0 1145 212 52 48 chrX 136379673 136380092 -26219838 + MLT1A1 LTR MaLR 1 363 -2 255 206 44 15 chrX 136380173 136380241 -26219689 - MIR SINE MIR -73 135 66 333 210 15 3 chrX 136380316 136380401 -26219529 + MER7A DNA MER2_type 2 84 -262 41323 67 4 5 chrX 136380409 136386547 -26213383 - L1PA7 LINE L1 -13 6141 11 4915 196 25 5 chrX 136386552 136387605 -26212325 - L1 LINE L1 -947 5199 4126 674 205 0 0 chrX 136387606 136387723 -26212207 + Tigger1 DNA MER2_type 2301 2417 -1 304 339 0 17 chrX 136387746 136387864 -26212066 - L2 LINE L2 -656 2658 2543 240 359 68 29 chrX 136387894 136388245 -26211685 - L2 LINE L2 -691 2623 2259 206 83 0 56 chrX 136388403 136388439 -26211491 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 203 177 32 32 chrX 136388677 136388739 -26211191 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 478 289 13 26 chrX 136389296 136389448 -26210482 - MIR3 SINE MIR 0 208 59 190 390 0 0 chrX 136389558 136389617 -26210313 - L2 LINE L2 -87 3185 3127 426 250 22 0 chrX 136391799 136391891 -26208039 - Tigger7 DNA MER2_type -1 2490 2397 * 2516 168 12 12 chrX 136391890 136392307 -26207623 - Tigger7 DNA MER2_type -316 417 1 2405 98 0 0 chrX 136445216 136445523 -26154407 - AluSc SINE Alu 0 309 3 584 232 40 61 chrX 136446728 136446926 -26153004 - MIR SINE MIR -32 230 37 277 225 141 0 chrX 136447199 136447270 -26152660 - MER5A DNA MER1_type -97 92 12 550 176 39 0 chrX 136447513 136447615 -26152315 + L2 LINE L2 3208 3313 0 321 47 0 0 chrX 136448102 136448145 -26151785 + (TG)n Simple_repeat Simple_repeat 2 44 0 2305 103 7 0 chrX 136448340 136448641 -26151289 + AluSx SINE Alu 1 303 -9 1955 126 52 17 chrX 136448994 136449343 -26150587 - MER46B DNA MER2_type 0 236 1 835 174 12 12 chrX 136449491 136449658 -26150272 + MER20B DNA MER1_type 53 219 0 27 29 0 0 chrX 136449912 136449946 -26149984 + AT_rich Low_complexity Low_complexity 1 34 0 204 217 22 0 chrX 136451775 136451821 -26148109 + CT-rich Low_complexity Low_complexity 1 47 0 189 107 0 0 chrX 136451821 136451849 -26148081 + (T)n Simple_repeat Simple_repeat 1 28 0 446 313 62 85 chrX 136451864 136452171 -26147759 - L2 LINE L2 -46 3226 2927 257 293 40 67 chrX 136452191 136452341 -26147589 - MER5B DNA MER1_type -31 147 2 615 386 64 16 chrX 136452494 136452991 -26146939 - L2 LINE L2 -562 2752 2232 865 215 49 68 chrX 136454356 136454533 -26145397 - MIR SINE MIR -1 261 89 517 133 260 7 chrX 136454533 136454683 -26145247 - MER53 DNA DNA 0 189 2 865 215 49 68 chrX 136454683 136454770 -26145160 - MIR SINE MIR -173 89 2 2060 143 0 0 chrX 136454792 136455093 -26144837 + AluSx SINE Alu 1 301 -11 554 266 145 3 chrX 136455615 136455809 -26144121 + MIR SINE MIR 45 255 -7 184 240 60 20 chrX 136455922 136455972 -26143958 - MIR SINE MIR -163 99 48 755 256 6 11 chrX 136456433 136456609 -26143321 + MIR SINE MIR 17 191 -71 747 219 37 33 chrX 136456623 136456865 -26143065 - L1ME3A LINE L1 -2 6168 5926 213 259 52 0 chrX 136456865 136456923 -26143007 + MIR SINE MIR 187 247 -15 5018 12 0 0 chrX 136457097 136457664 -26142266 - L1PA2 LINE L1 -4 6151 5585 287 140 20 20 chrX 136457830 136457880 -26142050 + MIR3 SINE MIR 109 158 -50 6781 48 1 1 chrX 136458122 136459001 -26140929 - L1PA5 LINE L1 -1 6153 5275 404 285 16 0 chrX 136459794 136459917 -26140013 - MIR SINE MIR -2 260 136 1082 57 7 0 chrX 136461015 136461155 -26138775 + L1PA10 LINE L1 6022 6162 -6 720 213 18 0 chrX 136461208 136461372 -26138558 + L1ME2 LINE L1 5998 6164 0 212 239 0 0 chrX 136461842 136461897 -26138033 + MIR SINE MIR 98 151 -62 490 268 49 8 chrX 136461912 136462035 -26137895 - MIR SINE MIR -42 220 93 760 265 52 26 chrX 136462166 136462396 -26137534 + MIR SINE MIR 3 238 -24 1092 185 0 0 chrX 136462628 136462817 -26137113 - MER5A DNA MER1_type 0 189 1 206 333 53 30 chrX 136464583 136464715 -26135215 + L2 LINE L2 2624 2758 -556 1565 86 10 0 chrX 136464864 136465061 -26134869 + AluSc SINE Alu 66 264 -45 715 280 44 4 chrX 136466452 136466702 -26133228 + MIR SINE MIR 1 260 -2 301 290 77 33 chrX 136467715 136467898 -26132032 - MIR SINE MIR 0 262 72 614 352 88 22 chrX 136467946 136468355 -26131575 + L2 LINE L2 2399 2834 -480 192 333 80 60 chrX 136468581 136468731 -26131199 + L2 LINE L2 3115 3267 -5 3963 146 42 8 chrX 136469623 136470369 -26129561 + L1MB1 LINE L1 5397 6167 -1 287 102 51 51 chrX 136470439 136470529 -26129401 + (TA)n Simple_repeat Simple_repeat 1 93 -64 2492 161 27 0 chrX 136470529 136470934 -26128996 - MER47B DNA MER2_type 0 418 3 287 102 51 51 chrX 136470934 136471000 -26128930 + (TA)n Simple_repeat Simple_repeat 92 157 0 318 234 0 43 chrX 136471010 136471104 -26128826 - L1MC4 LINE L1 -1339 6703 6614 231 88 0 0 chrX 136471307 136471341 -26128589 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 247 307 23 0 chrX 136471366 136471454 -26128476 + CT-rich Low_complexity Low_complexity 70 159 0 2112 104 3 13 chrX 136471706 136471940 -26127990 + L1PA14 LINE L1 5844 6076 -85 585 100 0 0 chrX 136471940 136472020 -26127910 - MADE1 DNA Mariner 0 80 1 2112 104 3 13 chrX 136472020 136472101 -26127829 + L1PA14 LINE L1 6076 6156 -5 195 337 43 22 chrX 136473117 136473209 -26126721 - L2 LINE L2 -10 3262 3169 36395 84 6 8 chrX 136473217 136479374 -26120556 - L1PA6 LINE L1 -2 6152 11 671 45 0 0 chrX 136479585 136479673 -26120257 + L1PA2 LINE L1 6068 6155 0 1454 183 46 28 chrX 136479771 136480055 -26119875 + AluJo SINE Alu 6 294 -18 260 250 202 39 chrX 136480826 136480930 -26119000 - L2 LINE L2 -2 3270 3150 188 139 0 23 chrX 136481290 136481333 -26118597 + (GA)n Simple_repeat Simple_repeat 1 42 0 1467 98 4 4 chrX 136481567 136481802 -26118128 + L1MA5 LINE L1 6034 6268 -32 227 219 38 29 chrX 136481802 136481907 -26118023 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 269 156 0 0 chrX 136483754 136483799 -26116131 - L2 LINE L2 -19 3294 3250 675 320 36 12 chrX 136484037 136484290 -26115640 + MIR SINE MIR 4 262 0 872 275 40 4 chrX 136484895 136485146 -26114784 - LTR16C LTR ERVL 0 491 232 1137 160 28 28 chrX 136485148 136485361 -26114569 - AluJo SINE Alu -15 297 85 196 236 28 42 chrX 136485669 136485741 -26114189 - L2 LINE L2 -1885 1429 1359 682 288 107 5 chrX 136486530 136486745 -26113185 - MIR SINE MIR -24 238 2 709 240 189 0 chrX 136488787 136489004 -26110926 - MIR SINE MIR 0 262 5 448 259 56 22 chrX 136489259 136489491 -26110439 + MER20B DNA MER1_type 543 782 -1 199 261 0 0 chrX 136489494 136489540 -26110390 + MIR3 SINE MIR 155 200 -8 371 309 8 24 chrX 136490396 136490519 -26109411 + L2 LINE L2 3150 3270 -2 323 308 11 0 chrX 136491203 136491294 -26108636 + MIR3 SINE MIR 87 178 -30 445 299 8 22 chrX 136491306 136491440 -26108490 + MIR SINE MIR 18 149 -113 6095 59 5 1 chrX 136491625 136492435 -26107495 + L1PA10 LINE L1 5346 6158 -10 984 249 47 12 chrX 136492951 136493204 -26106726 + MIR SINE MIR 1 262 0 1931 101 19 6 chrX 136493456 136493773 -26106157 + L1PB1 LINE L1 5405 5725 -426 204 40 0 0 chrX 136493784 136493809 -26106121 + (TA)n Simple_repeat Simple_repeat 1 25 0 2696 73 3 0 chrX 136493811 136494169 -26105761 + L1PB1 LINE L1 5793 6151 0 2446 264 131 20 chrX 136495033 136495913 -26104017 + L2 LINE L2 1152 2128 -1186 305 329 150 29 chrX 136496018 136496258 -26103672 + L2 LINE L2 2595 2863 -451 627 176 195 6 chrX 136496302 136496461 -26103469 - MER53 DNA DNA 0 189 1 372 289 193 41 chrX 136496463 136496681 -26103249 + L2 LINE L2 3019 3269 -3 309 26 0 0 chrX 136497141 136497179 -26102751 + (TG)n Simple_repeat Simple_repeat 2 39 0 1381 133 96 96 chrX 136497845 136498147 -26101783 - AluJb SINE Alu -10 302 1 372 269 32 0 chrX 136498167 136498260 -26101670 - MIR3 SINE MIR -28 180 85 1986 145 0 0 chrX 136499187 136499523 -26100407 + AluSx SINE Alu 1 336 0 197 317 67 0 chrX 136499741 136499801 -26100129 - L2 LINE L2 -9 3263 3200 217 264 100 55 chrX 136499893 136500003 -26099927 + MIR SINE MIR 36 150 -58 214 200 200 0 chrX 136500687 136500752 -26099178 + MIR SINE MIR 113 190 -72 181 324 123 44 chrX 136501505 136501709 -26098221 - L2 LINE L2 -214 3058 2839 782 214 29 67 chrX 136502424 136502662 -26097268 - L2 LINE L2 -2 3311 3083 25 0 0 0 chrX 136502671 136502696 -26097234 + AT_rich Low_complexity Low_complexity 1 25 0 2029 110 0 37 chrX 136502741 136503040 -26096890 - AluSx SINE Alu -24 288 1 692 269 14 31 chrX 136503050 136503273 -26096657 - L2 LINE L2 -245 3068 2850 521 128 0 0 chrX 136503303 136503381 -26096549 + AluJ/FLAM SINE Alu 1 78 -234 825 256 35 0 chrX 136503437 136503640 -26096290 - L2 LINE L2 -544 2770 2561 6760 213 49 26 chrX 136503839 136504257 -26095673 - L1MB7 LINE L1 -2 6182 5775 1858 74 0 4 chrX 136504257 136504486 -26095444 - AluSg SINE Alu -82 228 1 6760 213 49 26 chrX 136504486 136505994 -26093936 - L1MB7 LINE L1 -409 5775 4188 1998 147 0 25 chrX 136505994 136506314 -26093616 - AluJo SINE Alu 0 312 1 6760 213 49 26 chrX 136506314 136506997 -26092933 - L1MB7 LINE L1 -1996 4188 3522 1671 168 17 84 chrX 136507789 136508207 -26091723 - MLT1B LTR MaLR 0 390 1 468 225 120 0 chrX 136509156 136509298 -26090632 + L1MC4a LINE L1 5989 6147 -1661 196 313 92 53 chrX 136510464 136510595 -26089335 - L2 LINE L2 -5 3267 3132 1511 191 10 14 chrX 136510606 136510894 -26089036 - AluJo SINE Alu -14 298 12 1727 195 0 17 chrX 136511328 136511620 -26088310 + AluJo SINE Alu 3 289 -23 852 38 0 0 chrX 136512698 136512803 -26087127 + L1PA4 LINE L1 6048 6152 -3 2175 111 0 3 chrX 136513208 136513529 -26086401 - AluSg1 SINE Alu 0 309 1 1874 142 7 0 chrX 136513766 136514047 -26085883 - AluJb SINE Alu -27 285 3 411 230 16 56 chrX 136515198 136515324 -26084606 - MIR3 SINE MIR -51 157 37 21 0 0 0 chrX 136517568 136517589 -26082341 + AT_rich Low_complexity Low_complexity 1 21 0 181 111 67 0 chrX 136518166 136518211 -26081719 + (TATAA)n Simple_repeat Simple_repeat 2 49 0 512 170 20 20 chrX 136518381 136518481 -26081449 + MER94 DNA DNA 1 100 -34 24 0 0 0 chrX 136520448 136520472 -26079458 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 136520927 136520949 -26078981 + AT_rich Low_complexity Low_complexity 1 22 0 273 331 84 24 chrX 136522496 136522662 -26077268 + MER5B DNA MER1_type 2 177 -1 2208 94 24 0 chrX 136524250 136524537 -26075393 + AluSx SINE Alu 1 294 -18 438 69 0 0 chrX 136525129 136525187 -26074743 + (TA)n Simple_repeat Simple_repeat 2 59 0 1495 254 109 22 chrX 136525299 136525828 -26074102 - L2 LINE L2 0 3313 2742 463 352 16 16 chrX 136528732 136528914 -26071016 - MIR3 SINE MIR -1 207 26 404 326 162 17 chrX 136529257 136529616 -26070314 + L3b LINE CR1 1105 1515 -68 334 315 63 0 chrX 136529846 136529957 -26069973 - MIR3 SINE MIR -13 195 78 447 237 58 14 chrX 136530159 136530298 -26069632 - MER20B DNA MER1_type -614 169 25 1871 154 36 22 chrX 136530357 136530714 -26069216 - MLT1A1 LTR MaLR 0 365 4 2188 116 78 3 chrX 136531246 136531616 -26068314 + L1MA2 LINE L1 5907 6304 0 1785 163 0 3 chrX 136533682 136533976 -26065954 + AluJo SINE Alu 18 310 -2 375 141 120 33 chrX 136534016 136534108 -26065822 + L1MB3 LINE L1 6084 6183 0 186 248 115 80 chrX 136534182 136534295 -26065635 + L2 LINE L2 2918 3034 -238 438 53 0 0 chrX 136536294 136536351 -26063579 + (CA)n Simple_repeat Simple_repeat 2 58 0 306 330 64 0 chrX 136536714 136536808 -26063122 + L2 LINE L2 3149 3248 -24 1672 266 39 14 chrX 136537908 136538699 -26061231 + L1M2a LINE L1 1534 2362 -4736 413 358 34 7 chrX 136539192 136539340 -26060590 - L2 LINE L2 -9 3263 3112 3176 65 5 0 chrX 136542567 136542981 -26056949 + L1PA7 LINE L1 5736 6151 -3 444 316 32 19 chrX 136543517 136543675 -26056255 + MER5B DNA MER1_type 3 162 -16 266 308 31 92 chrX 136543519 136543714 -26056216 - MER5A DNA MER1_type -5 184 2 * 1210 170 65 44 chrX 136543939 136544168 -26055762 - MER8 DNA MER2_type -4 235 2 1800 156 0 28 chrX 136545294 136545615 -26054315 + AluJb SINE Alu 1 312 0 187 328 0 33 chrX 136545731 136545792 -26054138 - L3 LINE CR1 -5 1572 1514 387 332 42 32 chrX 136545938 136546128 -26053802 - MIR3 SINE MIR -7 201 10 1177 161 52 19 chrX 136546328 136546595 -26053335 - L1MA8 LINE L1 -3 6288 6013 922 153 54 39 chrX 136546595 136546798 -26053132 + L1MA7 LINE L1 5833 6038 -253 208 305 49 12 chrX 136549081 136549163 -26050767 + MIR3 SINE MIR 121 205 -3 699 164 4 0 chrX 136549648 136549872 -26050058 + (TA)n Simple_repeat Simple_repeat 1 248 -15 189 0 0 0 chrX 136549872 136549893 -26050037 + (TC)n Simple_repeat Simple_repeat 2 22 0 699 164 4 0 chrX 136549893 136549910 -26050020 + (TA)n Simple_repeat Simple_repeat 248 263 0 342 0 0 0 chrX 136549916 136549954 -26049976 + (GA)n Simple_repeat Simple_repeat 1 38 0 799 175 82 31 chrX 136554319 136554352 -26045578 + MER105 DNA DNA 1 31 -173 537 248 104 40 chrX 136554352 136554554 -26045376 - MER58C DNA MER1_type 0 215 1 799 175 82 31 chrX 136554554 136554714 -26045216 + MER105 DNA DNA 31 204 0 192 40 0 0 chrX 136555541 136555566 -26044364 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chrX 136556789 136556812 -26043118 + (A)n Simple_repeat Simple_repeat 1 23 0 2094 129 0 0 chrX 136557983 136558269 -26041661 - AluSx SINE Alu -26 286 1 357 195 19 136 chrX 136558294 136558448 -26041482 - MARNA DNA Mariner -196 390 255 402 21 0 0 chrX 136558705 136558752 -26041178 + (TG)n Simple_repeat Simple_repeat 1 47 0 240 233 12 12 chrX 136559081 136559167 -26040763 + (TAA)n Simple_repeat Simple_repeat 2 87 0 761 240 50 0 chrX 136559621 136559800 -26040130 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chrX 136559922 136559943 -26039987 + AT_rich Low_complexity Low_complexity 1 21 0 2568 27 40 0 chrX 136559988 136560287 -26039643 + AluY SINE Alu 1 311 0 33 0 0 0 chrX 136560437 136560470 -26039460 + AT_rich Low_complexity Low_complexity 1 33 0 504 15 0 15 chrX 136560473 136560539 -26039391 - L1PA2 LINE L1 -10 6145 6081 2628 144 78 23 chrX 136562889 136563345 -26036585 + L1MA5 LINE L1 5761 6249 -51 1871 155 3 3 chrX 136563345 136563636 -26036294 + AluJb SINE Alu 1 291 -21 2628 144 78 23 chrX 136563636 136563691 -26036239 + L1MA5 LINE L1 6249 6300 0 264 178 0 0 chrX 136566031 136566076 -26033854 + L2 LINE L2 3263 3307 -6 193 329 114 60 chrX 136566076 136566417 -26033513 + L2 LINE L2 2265 2649 -665 1721 167 6 41 chrX 136566417 136566735 -26033195 + AluJo SINE Alu 1 307 -5 193 329 114 60 chrX 136566735 136566956 -26032974 + L2 LINE L2 2649 2857 -457 1724 111 22 19 chrX 136567067 136567338 -26032592 - Tigger5 DNA MER2_type 0 2323 2052 1315 251 110 28 chrX 136571097 136571792 -26028138 + L2 LINE L2 2544 3296 -17 335 236 9 27 chrX 136571792 136571902 -26028028 + (TA)n Simple_repeat Simple_repeat 2 109 0 2988 232 16 35 chrX 136571904 136572707 -26027223 + L1MEc LINE L1 110 897 -5499 761 205 91 53 chrX 136572696 136572959 -26026971 + L1MEc LINE L1 1689 1961 -4435 * 39 0 0 0 chrX 136573983 136574022 -26025908 + AT_rich Low_complexity Low_complexity 1 39 0 6827 199 46 14 chrX 136574051 136575269 -26024661 - L1MA4 LINE L1 -7 7712 6535 1528 153 17 0 chrX 136575269 136575504 -26024426 + AluJo SINE Alu 1 239 -73 6827 199 46 14 chrX 136575504 136576845 -26023085 - L1MA4 LINE L1 -1184 6535 4985 658 161 0 56 chrX 136576879 136577022 -26022908 - L1MA3 LINE L1 -1 6304 6170 210 242 0 0 chrX 136577024 136577086 -26022844 + T-rich Low_complexity Low_complexity 1 62 0 19991 32 1 0 chrX 136577086 136580286 -26019644 - L1PA3 LINE L1 0 6155 2955 15888 41 1 3 chrX 136580288 136582268 -26017662 + L1PA3 LINE L1 976 2950 -3196 1527 154 15 0 chrX 136582267 136582533 -26017397 - L1MA4 LINE L1 -2568 4997 4728 * 1875 223 45 28 chrX 136582546 136583389 -26016541 - L1MA4 LINE L1 -3942 3623 2721 * 2661 193 21 35 chrX 136583385 136584013 -26015917 - L1MDa LINE L1 -1520 5124 4506 1432 255 39 14 chrX 136584012 136584498 -26015432 - L1M4 LINE L1 -1433 5211 4714 * 5317 235 50 29 chrX 136584512 136584858 -26015072 - L1 LINE L1 -2216 4428 4091 1535 208 10 0 chrX 136584858 136585152 -26014778 - AluJo SINE Alu -15 297 1 5317 235 50 29 chrX 136585152 136588982 -26010948 - L1PB1 LINE L1 -2553 4091 81 * 7783 170 18 32 chrX 136588980 136591192 -26008738 + L1PB1 LINE L1 4112 6289 -360 347 139 60 0 chrX 136591192 136591358 -26008572 + (TA)n Simple_repeat Simple_repeat 1 176 0 736 187 0 0 chrX 136591363 136591502 -26008428 - L1MDa LINE L1 -2394 4250 4112 531 215 0 0 chrX 136591600 136591772 -26008158 + (TA)n Simple_repeat Simple_repeat 1 172 0 1935 153 38 12 chrX 136591772 136592118 -26007812 + L1PB1 LINE L1 6280 6634 -15 7803 69 1 9 chrX 136592120 136592918 -26007012 - HERVL-A1 LTR ERVL -4667 987 197 1853 119 0 4 chrX 136592918 136593169 -26006761 - AluSx SINE Alu -17 295 46 7803 69 1 9 chrX 136593169 136593365 -26006565 - HERVL-A1 LTR ERVL -5457 197 1 3146 71 54 5 chrX 136593365 136593401 -26006529 - MLT2A1 LTR ERVL 0 444 411 599 0 14 0 chrX 136593401 136593472 -26006458 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 3146 71 54 5 chrX 136593472 136593858 -26006072 - MLT2A1 LTR ERVL -33 411 1 311 182 101 101 chrX 136593862 136593961 -26005969 - MLT1B LTR MaLR -291 99 1 2335 240 52 50 chrX 136594111 136594733 -26005197 - L1MDa LINE L1 -3022 3622 3003 281 122 102 0 chrX 136594733 136594782 -26005148 - MADE1 DNA Mariner -26 54 1 2335 240 52 50 chrX 136594782 136595283 -26004647 - L1MDa LINE L1 -3641 3003 2505 1058 165 61 137 chrX 136595283 136595676 -26004254 + MLT1A1 LTR MaLR 3 365 0 2335 240 52 50 chrX 136595676 136596450 -26003480 - L1MDa LINE L1 -4139 2505 1676 2331 100 12 0 chrX 136596450 136596781 -26003149 - L1PA13 LINE L1 -1 6162 5828 231 36 0 0 chrX 136596781 136596809 -26003121 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1241 91 0 0 chrX 136596811 136596965 -26002965 - AluSg/x SINE Alu -29 283 130 318 263 47 53 chrX 136596984 136597155 -26002775 - L1MDa LINE L1 -4954 1690 1521 701 307 156 33 chrX 136598417 136598899 -26001031 - MLT1K LTR MaLR -6 582 42 739 299 129 25 chrX 136601054 136601789 -25998141 + L1MDa LINE L1 1283 2134 -4471 21 0 0 0 chrX 136601847 136601868 -25998062 + AT_rich Low_complexity Low_complexity 1 21 0 1492 216 84 7 chrX 136602039 136602121 -25997809 - Charlie1a DNA MER1_type -1306 1455 1381 276 77 0 0 chrX 136602121 136602160 -25997770 + (TA)n Simple_repeat Simple_repeat 2 40 0 1492 216 84 7 chrX 136602160 136602541 -25997389 - Charlie1a DNA MER1_type -1380 1381 956 5419 88 4 1 chrX 136602543 136603330 -25996600 - L1PA13 LINE L1 -15 6148 5360 2416 160 29 134 chrX 136603332 136603493 -25996437 - Charlie1a DNA MER1_type -1803 958 782 1593 145 19 15 chrX 136603493 136603755 -25996175 - AluSx SINE Alu -49 263 1 2416 160 29 134 chrX 136603755 136603789 -25996141 - Charlie1a DNA MER1_type -1979 782 746 1795 157 3 7 chrX 136603789 136604075 -25995855 + AluJb SINE Alu 1 285 -27 2416 160 29 134 chrX 136604075 136604641 -25995289 - Charlie1a DNA MER1_type -2015 746 276 513 190 0 0 chrX 136604641 136604741 -25995189 - Charlie1a DNA MER1_type -1301 154 55 551 101 112 0 chrX 136604743 136604832 -25995098 + 5S rRNA rRNA 2 100 -21 270 314 0 0 chrX 136604820 136604890 -25995040 - Charlie1a DNA MER1_type -1384 71 2 * 2014 138 3 10 chrX 136604937 136605228 -25994702 + AluSx SINE Alu 3 291 -21 575 354 46 20 chrX 136606029 136606331 -25993599 - L3 LINE CR1 -1 1576 1267 402 267 14 111 chrX 136606482 136606699 -25993231 + MLT1L LTR MaLR 2 197 -418 233 200 94 12 chrX 136607011 136607096 -25992834 + MLT1L LTR MaLR 516 607 -8 656 288 118 0 chrX 136607295 136607507 -25992423 - MIR SINE MIR -6 256 20 355 276 119 8 chrX 136607721 136607855 -25992075 + MIR SINE MIR 70 218 -44 310 214 183 24 chrX 136607907 136608033 -25991897 - MER97b DNA MER1_type? -874 179 34 220 292 83 14 chrX 136608666 136608738 -25991192 + L2 LINE L2 3185 3261 -52 248 302 0 0 chrX 136608899 136608962 -25990968 + (TATG)n Simple_repeat Simple_repeat 1 63 0 3162 224 52 28 chrX 136609504 136610638 -25989292 - L1M4 LINE L1 -1914 4232 3072 27392 55 2 3 chrX 136610643 136614162 -25985768 + HERV17 LTR ERV1 3635 7150 -1476 299 26 0 0 chrX 136614155 136614193 -25985737 + HERV17 LTR ERV1 7511 7548 -1078 * 1964 79 0 0 chrX 136614183 136614448 -25985482 + HERV17 LTR ERV1 8335 8599 -27 1875 112 4 0 chrX 136614448 136614724 -25985206 + L1PB1 LINE L1 5867 6143 -8 1055 92 35 29 chrX 136614727 136614747 -25985183 + L1MA3 LINE L1 6130 6148 -157 2038 147 3 22 chrX 136614747 136615061 -25984869 + AluSx SINE Alu 1 308 -4 1055 92 35 29 chrX 136615061 136615214 -25984716 + L1MA3 LINE L1 6148 6304 -1 429 239 0 39 chrX 136615217 136615347 -25984583 + L1M4 LINE L1 2948 3072 -3074 12328 198 48 10 chrX 136615348 136618209 -25981721 - L1PBa LINE L1 -1235 5627 2875 240 35 0 0 chrX 136618209 136618238 -25981692 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 12328 198 48 10 chrX 136618238 136620640 -25979290 - L1PBa LINE L1 -3987 2875 6 5312 124 19 34 chrX 136620653 136621554 -25978376 - L1MA3 LINE L1 -166 7558 6691 2238 111 18 47 chrX 136621554 136621940 -25977990 - THE1C LTR MaLR 0 375 1 5312 124 19 34 chrX 136621940 136622427 -25977503 - L1MA3 LINE L1 -1033 6691 6198 * 19533 124 34 2 chrX 136622413 136623832 -25976098 - L1MA3 LINE L1 -4335 3230 1858 312 27 0 0 chrX 136623832 136623869 -25976061 + (TC)n Simple_repeat Simple_repeat 2 38 0 19533 124 34 2 chrX 136623869 136625568 -25974362 - L1MA3 LINE L1 -5707 1858 12 752 205 11 0 chrX 136625568 136625758 -25974172 - L1M4 LINE L1 -3188 3769 3578 1936 256 9 75 chrX 136625768 136626338 -25973592 - L1M4 LINE L1 -6223 636 112 2327 54 4 0 chrX 136626338 136626644 -25973286 - AluY SINE Alu 0 311 5 1936 256 9 75 chrX 136626644 136626724 -25973206 - L1M4 LINE L1 -6747 112 28 342 98 0 0 chrX 136628144 136628195 -25971735 + (CA)n Simple_repeat Simple_repeat 1 51 0 953 102 12 12 chrX 136629035 136629202 -25970728 - L1MA7 LINE L1 0 6291 6125 7609 45 0 1 chrX 136629202 136630913 -25969017 + L1PA5 LINE L1 4435 6141 -13 2855 130 14 16 chrX 136630916 136631417 -25968513 - L1MA7 LINE L1 -152 6139 5640 480 341 58 9 chrX 136631418 136631641 -25968289 - MLT1K LTR MaLR -322 266 33 440 329 38 6 chrX 136632512 136632670 -25967260 - MIR SINE MIR 0 262 100 860 176 58 125 chrX 136633982 136634358 -25965572 - L1MC4 LINE L1 -1 8041 7691 313 369 67 0 chrX 136634584 136634779 -25965151 + HERV16 LTR ERVL 1172 1379 -3617 2810 145 127 92 chrX 136634780 136634931 -25964999 - MER52C LTR ERV1 0 1278 1134 468 139 0 23 chrX 136634931 136635042 -25964888 + AluSg/x SINE Alu 217 310 0 2810 145 127 92 chrX 136635042 136635927 -25964003 - MER52C LTR ERV1 -144 1134 1 1088 338 52 16 chrX 136636291 136636865 -25963065 + HERV16 LTR ERVL 1882 2476 -3178 318 352 77 0 chrX 136637013 136637235 -25962695 + HERV16 LTR ERVL 2734 2956 -2040 554 347 38 30 chrX 136637237 136637609 -25962321 + HERV16 LTR ERVL 3248 3622 -2142 2050 94 7 36 chrX 136638009 136638423 -25961507 - L1P LINE L1 -743 5403 5017 2459 110 29 0 chrX 136638424 136638805 -25961125 + L1PA13 LINE L1 5437 5828 -335 275 254 0 45 chrX 136638887 136638954 -25960976 + MER91 DNA MER1_type 133 196 0 2187 71 0 7 chrX 136639456 136639736 -25960194 + AluY SINE Alu 34 311 0 704 228 84 0 chrX 136639858 136640025 -25959905 - MER117 DNA MER1_type -11 186 6 303 28 0 0 chrX 136640305 136640341 -25959589 + (TG)n Simple_repeat Simple_repeat 2 37 0 256 167 39 10 chrX 136640795 136640897 -25959033 + (TA)n Simple_repeat Simple_repeat 2 106 0 761 222 43 34 chrX 136640913 136641120 -25958810 + MER3 DNA MER1_type 1 209 0 243 242 48 0 chrX 136642605 136642667 -25957263 + U6 snRNA snRNA 1 65 -42 772 185 7 7 chrX 136643637 136643772 -25956158 + MER5A DNA MER1_type 2 136 -53 1429 186 68 0 chrX 136643797 136644104 -25955826 - L1MC4 LINE L1 -195 7847 7520 279 283 0 0 chrX 136644122 136644182 -25955748 + MER5A DNA MER1_type 130 189 0 614 13 13 0 chrX 136644435 136644510 -25955420 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 223 258 32 16 chrX 136644810 136644872 -25955058 - L2 LINE L2 -228 3085 3023 253 208 0 0 chrX 136644987 136645035 -25954895 + L2 LINE L2 2231 2278 -1036 1648 183 41 29 chrX 136647079 136647494 -25952436 + L1MB7 LINE L1 5764 6183 -1 1627 175 25 11 chrX 136647630 136647944 -25951986 - AluJb SINE Alu 0 318 1 253 288 96 40 chrX 136648000 136648125 -25951805 + MIR SINE MIR 121 252 -10 5646 93 2 12 chrX 136649290 136650137 -25949793 - L1PA10 LINE L1 0 6168 5330 5866 155 29 2 chrX 136650229 136651624 -25948306 - L1MA9 LINE L1 0 6312 4875 1686 252 62 20 chrX 136651758 136652356 -25947574 - L1M3e LINE L1 -5082 1948 1 288 0 0 0 chrX 136652754 136652786 -25947144 + (TG)n Simple_repeat Simple_repeat 2 33 0 341 282 179 20 chrX 136652865 136653060 -25946870 - L2 LINE L2 -656 2658 2433 267 31 0 0 chrX 136653115 136653147 -25946783 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 785 318 27 88 chrX 136653151 136653694 -25946236 - L2 LINE L2 -15 3257 2752 1673 179 23 0 chrX 136653721 136654074 -25945856 - L1MD1 LINE L1 0 6636 6276 5787 246 61 32 chrX 136654075 136656081 -25943849 - L1MD1 LINE L1 -898 5642 3559 1527 192 33 7 chrX 136656081 136656383 -25943547 - AluJo SINE Alu -2 310 1 5787 246 61 32 chrX 136656383 136656689 -25943241 - L1MD1 LINE L1 -2981 3559 3263 1257 190 31 0 chrX 136656702 136656960 -25942970 + L1PA15 LINE L1 4406 4671 -1475 1803 156 50 36 chrX 136656960 136657318 -25942612 + THE1C LTR MaLR 1 363 -12 5781 116 16 9 chrX 136657321 136658815 -25941115 + L1PA15 LINE L1 4666 6165 0 4297 202 56 38 chrX 136658826 136660372 -25939558 - L1MD1 LINE L1 -3269 3271 1690 2842 3 0 6 chrX 136660372 136660685 -25939245 - AluYa5 SINE Alu 0 311 1 4297 202 56 38 chrX 136660685 136660866 -25939064 - L1MD1 LINE L1 -4850 1690 1514 1781 176 7 0 chrX 136660867 136661157 -25938773 + AluJb SINE Alu 1 292 -20 218 32 32 0 chrX 136661161 136661192 -25938738 + (GGAGAA)n Simple_repeat Simple_repeat 5 36 0 321 148 89 2 chrX 136661192 136661269 -25938661 - L1MD1 LINE L1 -5016 1524 1442 1605 133 66 23 chrX 136661270 136661645 -25938285 - L1MA5 LINE L1 -5 6292 5879 * 3165 229 62 55 chrX 136661617 136661748 -25938182 - L1MD1 LINE L1 -5060 1480 1351 219 36 0 0 chrX 136661748 136661776 -25938154 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3165 229 62 55 chrX 136661776 136662395 -25937535 - L1MD1 LINE L1 -5189 1351 738 2036 119 0 26 chrX 136662395 136662697 -25937233 + AluJb SINE Alu 1 294 -18 3165 229 62 55 chrX 136662697 136663225 -25936705 - L1MD1 LINE L1 -5802 738 34 308 355 97 21 chrX 136663226 136663412 -25936518 - L2 LINE L2 -561 2753 2554 206 247 186 10 chrX 136663448 136663545 -25936385 - L2 LINE L2 0 3313 3200 446 314 41 33 chrX 136663575 136663968 -25935962 - L2 LINE L2 -780 2534 2043 669 334 48 43 chrX 136664295 136664834 -25935096 + MERVL-B3 LTR ERVL 815 1356 -4408 415 304 109 37 chrX 136664992 136665314 -25934616 + MERVL-B3 LTR ERVL 1539 1883 -3881 3042 132 38 4 chrX 136665315 136665793 -25934137 - Tigger1 DNA MER2_type 0 2418 1925 * 3597 151 5 0 chrX 136665790 136666347 -25933583 - Tigger1 DNA MER2_type -1858 560 1 2031 324 56 30 chrX 136666351 136667319 -25932611 + MERVL-B3 LTR ERVL 1887 2879 -2885 7467 36 4 0 chrX 136667338 136668311 -25931619 - L1PA5 LINE L1 -5 6149 5175 919 132 126 11 chrX 136668311 136668493 -25931437 - MSTA LTR MaLR -48 380 178 4744 304 44 60 chrX 136668502 136668718 -25931212 + MERVL-B3 LTR ERVL 2901 3119 -2645 2436 79 0 16 chrX 136668718 136669033 -25930897 - AluY SINE Alu -1 310 1 4744 304 44 60 chrX 136669033 136669726 -25930204 + MERVL-B3 LTR ERVL 3119 3822 -1942 2632 130 11 39 chrX 136669726 136669829 -25930101 + L1PA16 LINE L1 5711 5815 -351 2408 91 0 0 chrX 136669829 136670137 -25929793 + AluSg SINE Alu 1 308 -2 2632 130 11 39 chrX 136670137 136670493 -25929437 + L1PA16 LINE L1 5815 6157 -9 4744 304 44 60 chrX 136670493 136672103 -25927827 + MERVL-B3 LTR ERVL 3822 5380 -384 2283 97 3 0 chrX 136672134 136672432 -25927498 - AluSp SINE Alu -14 299 1 2739 243 36 27 chrX 136672480 136674036 -25925894 - L1ME1 LINE L1 -43 6123 4556 3675 155 16 16 chrX 136674107 136674785 -25925145 - L1MB2 LINE L1 -3 6168 5491 9546 237 57 18 chrX 136674812 136678308 -25921622 + L1MCa LINE L1 1932 5567 -859 187 364 10 20 chrX 136680469 136680568 -25919362 + MIR SINE MIR 33 130 -78 752 344 83 10 chrX 136682301 136682711 -25917219 + MERVL-B3 LTR ERVL 2633 3072 -2413 2128 145 16 3 chrX 136682712 136683085 -25916845 + MERVL-B3 LTR ERVL 5383 5760 -4 2660 221 3 42 chrX 136683086 136683656 -25916274 + MLT2B3 LTR ERVL 5 552 -2 1805 320 86 31 chrX 136683657 136683897 -25916033 + ERVL LTR ERVL 3108 3333 -2431 1779 183 3 3 chrX 136683897 136684208 -25915722 + AluJo SINE Alu 1 311 -1 1805 320 86 31 chrX 136684208 136684898 -25915032 + ERVL LTR ERVL 3333 4089 -1675 566 247 14 14 chrX 136684899 136685045 -25914885 + MLT1D LTR MaLR 8 153 -396 23 0 0 0 chrX 136685308 136685331 -25914599 + AT_rich Low_complexity Low_complexity 1 23 0 742 99 0 0 chrX 136685486 136685587 -25914343 + AluSg/x SINE Alu 194 294 -16 1212 204 65 85 chrX 136685795 136685880 -25914050 - L1MC4 LINE L1 -381 7661 7576 1984 124 0 3 chrX 136685880 136686206 -25913724 - AluSx SINE Alu 0 325 1 1212 204 65 85 chrX 136686206 136686565 -25913365 - L1MC4 LINE L1 -466 7576 7225 334 153 0 0 chrX 136686606 136686664 -25913266 - Alu SINE Alu -11 291 239 2066 109 11 7 chrX 136686669 136686984 -25912946 - AluSx SINE Alu 0 316 1 5171 206 51 64 chrX 136686992 136688510 -25911420 - L1MC4 LINE L1 -6 8036 6539 1001 171 79 71 chrX 136688523 136688763 -25911167 + MLT1D LTR MaLR 258 499 -6 335 297 48 48 chrX 136690081 136690290 -25909640 + L1M4 LINE L1 3790 3998 -2148 254 115 0 19 chrX 136690401 136690453 -25909477 - L1MA9 LINE L1 0 6312 6262 180 0 0 0 chrX 136690469 136690489 -25909441 + (GA)n Simple_repeat Simple_repeat 1 20 0 1533 164 15 19 chrX 136690492 136690761 -25909169 - AluJb SINE Alu -44 268 1 1348 162 0 20 chrX 136690762 136691015 -25908915 - L1MA9 LINE L1 -36 6276 6029 453 177 19 108 chrX 136691013 136691171 -25908759 + L1M4 LINE L1 3825 3968 -2178 * 9019 79 23 2 chrX 136691204 136692406 -25907524 + HERVH48 LTR ERV1 5420 6646 -8 2395 73 0 58 chrX 136692413 136692756 -25907174 + MER48 LTR ERV1 4 326 -61 1564 238 80 21 chrX 136692822 136693384 -25906546 - L1M4 LINE L1 -1618 4528 3934 4960 143 30 16 chrX 136693385 136694448 -25905482 + L1MA4A LINE L1 5051 6125 -178 224 30 30 0 chrX 136694473 136694506 -25905424 + (TA)n Simple_repeat Simple_repeat 1 34 0 2087 117 3 0 chrX 136694506 136694796 -25905134 - AluSp SINE Alu -20 293 3 1106 121 0 0 chrX 136694799 136694972 -25904958 + L1MA4A LINE L1 6121 6293 -10 2538 247 38 49 chrX 136694976 136695478 -25904452 - L1M4 LINE L1 -2191 3955 3449 2259 109 0 3 chrX 136695478 136695790 -25904140 + AluSx SINE Alu 1 311 -1 2538 247 38 49 chrX 136695790 136695923 -25904007 - L1M4 LINE L1 -2697 3449 3316 2171 100 10 0 chrX 136695923 136696212 -25903718 - AluSq SINE Alu -21 292 1 2538 247 38 49 chrX 136696212 136696669 -25903261 - L1M4 LINE L1 -2830 3316 2874 2259 95 0 44 chrX 136696679 136696995 -25902935 + AluSx SINE Alu 1 302 -10 1637 88 4 0 chrX 136697104 136697332 -25902598 - L1PA10 LINE L1 -1 6167 5939 500 312 37 9 chrX 136697336 136697551 -25902379 - L1MEc LINE L1 -6154 242 22 474 316 99 7 chrX 136697553 136697847 -25902083 - L1MEd LINE L1 -5279 840 520 1762 190 0 13 chrX 136699059 136699369 -25900561 + AluJo SINE Alu 6 311 -1 5447 146 28 25 chrX 136699392 136699870 -25900060 + L1MA8 LINE L1 4877 5352 -939 2170 119 3 3 chrX 136699870 136700173 -25899757 - AluSq SINE Alu -8 305 3 5447 146 28 25 chrX 136700173 136701092 -25898838 + L1MA8 LINE L1 5352 6288 -3 21 26 0 26 chrX 136701092 136701108 -25898822 + AT_rich Low_complexity Low_complexity 1 16 -22 2513 48 0 0 chrX 136701108 136701399 -25898531 - AluY SINE Alu -20 291 1 21 26 0 26 chrX 136701399 136701421 -25898509 + AT_rich Low_complexity Low_complexity 16 38 0 676 300 0 16 chrX 136701559 136701749 -25898181 - MIR SINE MIR -3 259 73 733 268 91 5 chrX 136703904 136704102 -25895828 - MER58C DNA MER1_type 0 215 1 289 289 39 19 chrX 136704225 136704329 -25895601 - L1 LINE L1 -1155 4991 4886 1715 289 30 40 chrX 136704377 136705233 -25894697 + L1MEc LINE L1 1510 2357 -4039 922 252 77 47 chrX 136705229 136705658 -25894272 - L1 LINE L1 -1869 4277 3836 * 1878 211 32 13 chrX 136705648 136705660 -25894270 - L1M4 LINE L1 -499 5685 5675 2521 166 31 0 chrX 136705660 136706106 -25893824 - L1MB7 LINE L1 -1 6183 5724 1878 211 32 13 chrX 136706106 136706721 -25893209 - L1M4 LINE L1 -509 5675 5049 2390 99 0 0 chrX 136707884 136708186 -25891744 + AluSx SINE Alu 1 302 -10 2275 89 0 0 chrX 136708600 136708916 -25891014 - AluSg SINE Alu 0 316 1 1188 164 5 9 chrX 136708918 136709131 -25890799 - AluJb SINE Alu -16 296 85 2056 151 42 12 chrX 136709423 136709760 -25890170 + MER7A DNA MER2_type 1 345 -1 846 88 0 9 chrX 136709804 136709917 -25890013 - AluSc SINE Alu -24 285 174 198 222 0 0 chrX 136709985 136710039 -25889891 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 1422 162 4 36 chrX 136710387 136710634 -25889296 + AluJo SINE Alu 1 239 -73 30 0 0 0 chrX 136710657 136710687 -25889243 + AT_rich Low_complexity Low_complexity 1 30 0 2778 114 105 109 chrX 136711179 136711846 -25888084 + MER4A LTR ERV1 1 664 0 22 70 0 0 chrX 136713911 136713954 -25885976 + AT_rich Low_complexity Low_complexity 1 43 0 186 43 0 0 chrX 136714208 136714231 -25885699 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chrX 136714479 136714502 -25885428 + AT_rich Low_complexity Low_complexity 1 23 0 1243 36 0 0 chrX 136715226 136715365 -25884565 - L1PA3 LINE L1 -3 6152 6014 387 0 0 0 chrX 136718851 136718894 -25881036 + (TG)n Simple_repeat Simple_repeat 1 43 0 2230 84 0 7 chrX 136719937 136720247 -25879683 - AluSx SINE Alu 0 308 1 279 0 0 0 chrX 136720622 136720653 -25879277 + (CA)n Simple_repeat Simple_repeat 2 32 0 292 282 0 0 chrX 136722350 136722452 -25877478 + L1M LINE L1 5307 5408 -762 182 88 0 29 chrX 136722566 136722600 -25877330 + (TA)n Simple_repeat Simple_repeat 2 34 0 270 188 100 19 chrX 136722682 136722842 -25877088 + (TTAAA)n Simple_repeat Simple_repeat 4 176 0 306 279 23 0 chrX 136722845 136722931 -25876999 + L2 LINE L2 3226 3313 0 1144 138 0 0 chrX 136723152 136723311 -25876619 - AluSg/x SINE Alu -17 295 137 243 0 0 0 chrX 136723311 136723338 -25876592 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2005 71 8 8 chrX 136723338 136723593 -25876337 - AluSx SINE Alu -28 284 30 373 289 73 73 chrX 136723593 136724146 -25875784 + HAL1 LINE L1 1841 2396 -111 2492 68 0 0 chrX 136724146 136724441 -25875489 + AluY SINE Alu 1 295 -16 373 289 73 73 chrX 136724441 136724548 -25875382 + HAL1 LINE L1 2395 2501 -6 192 125 0 0 chrX 136724561 136724593 -25875337 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1578 190 371 8 chrX 136724595 136725075 -25874855 + MLT1E1 LTR MaLR 1 654 0 1424 225 65 22 chrX 136725116 136725472 -25874458 + MLT1A2 LTR MaLR 4 374 0 255 31 0 0 chrX 136725643 136725675 -25874255 + (TG)n Simple_repeat Simple_repeat 2 33 0 2057 133 0 7 chrX 136725889 136726190 -25873740 + AluSx SINE Alu 1 299 -13 234 219 62 31 chrX 136727248 136727312 -25872618 - LTR41 LTR ERVL -705 68 3 2516 81 0 0 chrX 136728413 136728722 -25871208 + AluY SINE Alu 1 309 -2 2404 70 3 13 chrX 136731304 136731602 -25868328 - AluSp SINE Alu -18 295 1 2178 120 0 3 chrX 136731602 136731901 -25868029 - AluSx SINE Alu -14 298 1 48 72 0 0 chrX 136732034 136732131 -25867799 + AT_rich Low_complexity Low_complexity 1 97 0 338 317 41 7 chrX 136732273 136732418 -25867512 + LTR33 LTR ERVL 8 157 -364 1995 88 4 11 chrX 136732741 136733003 -25866927 - AluSc SINE Alu -49 260 1 386 336 20 55 chrX 136733269 136733367 -25866563 + MIR SINE MIR 18 118 -144 1865 111 0 78 chrX 136733367 136733719 -25866211 + AluSg SINE Alu 1 328 0 386 336 20 55 chrX 136733719 136733872 -25866058 + MIR SINE MIR 118 261 -1 454 315 89 58 chrX 136734236 136734776 -25865154 + HAL1 LINE L1 1155 1715 -792 2333 95 0 0 chrX 136734776 136735080 -25864850 + AluSx SINE Alu 1 304 -8 454 315 89 58 chrX 136735080 136735111 -25864819 + HAL1 LINE L1 1715 1744 -763 282 254 52 100 chrX 136735586 136735877 -25864053 + L1M4 LINE L1 2140 2416 -3730 544 256 36 63 chrX 136735878 136735993 -25863937 - L1M4 LINE L1 -1557 4589 4472 2389 78 3 0 chrX 136735993 136736288 -25863642 - AluSp SINE Alu -17 296 1 544 256 36 63 chrX 136736288 136736350 -25863580 - L1M4 LINE L1 -1674 4472 4410 2224 97 20 7 chrX 136736350 136736650 -25863280 - AluSq SINE Alu -9 304 1 544 256 36 63 chrX 136736650 136736772 -25863158 - L1M4 LINE L1 -1736 4410 4297 343 273 113 36 chrX 136736828 136737022 -25862908 - L1M4 LINE L1 -1949 4197 3989 1145 285 84 25 chrX 136737031 136737419 -25862511 + MLT1H LTR MaLR 45 463 -86 2333 104 3 0 chrX 136737419 136737726 -25862204 - AluSx SINE Alu -4 308 1 1145 285 84 25 chrX 136737726 136737819 -25862111 + MLT1H LTR MaLR 463 549 0 600 278 62 39 chrX 136737832 136738264 -25861666 - L1M4 LINE L1 -2158 3988 3547 2261 99 3 0 chrX 136738270 136738564 -25861366 + AluSq SINE Alu 6 300 -13 1234 163 43 30 chrX 136739349 136739691 -25860239 + MER31B LTR ERV1 1 466 0 3035 231 121 17 chrX 136741707 136741799 -25858131 + L1M4 LINE L1 3 84 -6560 2403 43 0 0 chrX 136741799 136742106 -25857824 + AluY SINE Alu 1 307 0 3035 231 121 17 chrX 136742106 136742792 -25857138 + L1M4 LINE L1 84 698 -5946 2333 74 3 0 chrX 136742792 136743121 -25856809 - AluSq SINE Alu 0 330 1 3035 231 121 17 chrX 136743121 136743384 -25856546 + L1M4 LINE L1 698 932 -5712 2306 77 3 0 chrX 136743384 136743696 -25856234 - AluSc SINE Alu 0 309 1 3035 231 121 17 chrX 136743696 136745394 -25854536 + L1M4 LINE L1 932 3056 -3588 1754 154 14 7 chrX 136745394 136745702 -25854228 - AluSx SINE Alu 0 310 1 3035 231 121 17 chrX 136745702 136745804 -25854126 + L1M4 LINE L1 3056 3146 -3498 272 137 20 0 chrX 136748329 136748380 -25851550 + A-rich Low_complexity Low_complexity 3 54 0 612 233 23 23 chrX 136749211 136749344 -25850586 - FLAM_A SINE Alu 0 133 1 282 95 0 0 chrX 136749405 136749447 -25850483 + (CA)n Simple_repeat Simple_repeat 2 43 0 2363 94 0 13 chrX 136749554 136749862 -25850068 - AluSx SINE Alu -8 304 1 4036 240 46 32 chrX 136752348 136753737 -25846193 + L1M4 LINE L1 4450 5853 -814 1645 274 39 16 chrX 136753732 136754224 -25845706 + L1MA4 LINE L1 14 516 -4812 * 2420 103 0 0 chrX 136754267 136754579 -25845351 + AluSx SINE Alu 1 312 0 243 88 0 0 chrX 136754579 136754613 -25845317 + (GA)n Simple_repeat Simple_repeat 2 35 0 1773 240 29 2 chrX 136754620 136755032 -25844898 + L1MA4 LINE L1 2526 2948 -3380 * 5579 176 26 2 chrX 136755031 136756267 -25843663 + L1MA4 LINE L1 5198 6460 -22 3305 204 80 16 chrX 136756279 136757084 -25842846 + L1MB5 LINE L1 5319 6174 0 1685 180 0 3 chrX 136757542 136757831 -25842099 - AluJo SINE Alu -24 288 1 266 211 14 14 chrX 136758158 136758229 -25841701 + (TA)n Simple_repeat Simple_repeat 1 71 0 1992 151 0 0 chrX 136758411 136758715 -25841215 - AluSx SINE Alu -8 304 1 2246 106 3 0 chrX 136758826 136759127 -25840803 - AluSp SINE Alu -11 302 1 2158 106 0 3 chrX 136761710 136762002 -25837928 - AluSg SINE Alu -19 291 1 21 26 0 26 chrX 136762234 136762255 -25837675 + AT_rich Low_complexity Low_complexity 1 22 -16 2346 82 3 0 chrX 136762255 136762549 -25837381 + AluSp SINE Alu 1 295 -18 21 26 0 26 chrX 136762549 136762566 -25837364 + AT_rich Low_complexity Low_complexity 22 38 0 1529 168 27 8 chrX 136762800 136763062 -25836868 + AluSx SINE Alu 1 267 -45 570 149 17 17 chrX 136763102 136763277 -25836653 + (TA)n Simple_repeat Simple_repeat 1 175 0 181 145 36 24 chrX 136763288 136763371 -25836559 + (TA)n Simple_repeat Simple_repeat 2 85 0 330 45 0 0 chrX 136763539 136763583 -25836347 + (CA)n Simple_repeat Simple_repeat 2 45 0 1994 140 3 0 chrX 136765932 136766232 -25833698 - AluSx SINE Alu -11 301 1 198 0 0 0 chrX 136766236 136766258 -25833672 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1782 243 107 41 chrX 136766373 136767053 -25832877 - MER50 LTR ERV1 0 734 10 4260 250 27 21 chrX 136767227 136767490 -25832440 + L1M4 LINE L1 3974 4234 -1948 2177 115 7 0 chrX 136767490 136767785 -25832145 + AluSx SINE Alu 2 298 -14 4260 250 27 21 chrX 136767785 136768905 -25831025 + L1M4 LINE L1 4234 5368 -814 1029 263 29 123 chrX 136768887 136769118 -25830812 + L1MA4 LINE L1 14 164 -5164 * 2214 100 0 0 chrX 136769118 136769398 -25830532 + AluSx SINE Alu 1 280 -32 1029 263 29 123 chrX 136769398 136769721 -25830209 + L1MA4 LINE L1 164 516 -4812 * 1811 213 36 50 chrX 136769717 136769834 -25830096 + L1MA4 LINE L1 2481 2598 -3730 2114 70 7 0 chrX 136769834 136770107 -25829823 + AluY SINE Alu 1 275 -36 204 0 83 0 chrX 136770109 136770145 -25829785 + A-rich Low_complexity Low_complexity 2 40 0 1811 213 36 50 chrX 136770145 136770499 -25829431 + L1MA4 LINE L1 2599 2948 -3380 * 5244 175 49 13 chrX 136770498 136771704 -25828226 + L1MA4 LINE L1 5198 6471 -11 3350 211 71 12 chrX 136771700 136772515 -25827415 + L1MB5 LINE L1 5312 6174 0 * 540 186 224 12 chrX 136772587 136772748 -25827182 + L1MB7 LINE L1 5839 6033 -151 1411 189 0 74 chrX 136773133 136773445 -25826485 - AluJo SINE Alu -23 289 1 214 191 0 0 chrX 136773788 136773830 -25826100 + (TA)n Simple_repeat Simple_repeat 2 43 0 234 254 0 30 chrX 136774308 136774375 -25825555 + L1MB5 LINE L1 5837 5901 -220 2219 62 0 81 chrX 136774595 136774917 -25825013 + AluY SINE Alu 1 296 -15 2506 70 0 0 chrX 136777171 136777470 -25822460 - AluY SINE Alu -10 301 3 1708 129 29 74 chrX 136777823 136777972 -25821958 + AluSx SINE Alu 1 130 -182 2121 109 3 20 chrX 136777972 136778276 -25821654 + AluSc SINE Alu 11 309 0 1708 129 29 74 chrX 136778276 136778437 -25821493 + AluSx SINE Alu 130 297 -15 3332 49 316 78 chrX 136778448 136778938 -25820992 - MER11C LTR ERVK 0 1071 630 216 111 0 0 chrX 136779099 136779135 -25820795 + (CA)n Simple_repeat Simple_repeat 2 37 0 1887 95 36 0 chrX 136779990 136780242 -25819688 + AluSx SINE Alu 35 295 -17 1873 153 3 0 chrX 136781699 136781999 -25817931 - AluSx SINE Alu -11 301 1 2062 227 110 48 chrX 136782148 136782839 -25817091 - MER50 LTR ERV1 0 734 1 3603 248 21 67 chrX 136782990 136783999 -25815931 + L1M4 LINE L1 3952 5006 -1140 2269 74 3 19 chrX 136783999 136784308 -25815622 + AluY SINE Alu 1 304 -7 369 42 0 0 chrX 136784317 136784365 -25815565 + AluY SINE Alu 254 301 0 3603 248 21 67 chrX 136784365 136784729 -25815201 + L1M4 LINE L1 5014 5316 -830 2236 100 3 3 chrX 136784753 136785054 -25814876 + AluSg SINE Alu 1 301 -9 1201 185 18 13 chrX 136785131 136785358 -25814572 + L1MB5 LINE L1 5947 6174 0 754 190 0 0 chrX 136785467 136785588 -25814342 + FLAM_C SINE Alu 1 121 -12 26 0 0 0 chrX 136785588 136785614 -25814316 + AT_rich Low_complexity Low_complexity 1 26 0 1558 208 0 3 chrX 136785949 136786237 -25813693 - AluJo SINE Alu -25 287 1 2307 99 0 19 chrX 136786418 136786731 -25813199 - AluSg SINE Alu -3 307 1 245 195 35 0 chrX 136787017 136787098 -25812832 + (TA)n Simple_repeat Simple_repeat 2 90 -28 799 148 16 0 chrX 136787098 136787220 -25812710 + FLAM_C SINE Alu 2 125 -8 245 195 35 0 chrX 136787220 136787251 -25812679 + (TA)n Simple_repeat Simple_repeat 90 118 0 2273 102 0 0 chrX 136788456 136788750 -25811180 + AluSg SINE Alu 2 295 -15 2300 61 11 0 chrX 136789455 136789758 -25810172 - AluSc SINE Alu 0 306 1 2347 73 30 0 chrX 136790000 136790302 -25809628 - AluSp SINE Alu -2 311 1 619 194 0 22 chrX 136791478 136791612 -25808318 + L1MB5 LINE L1 6044 6174 0 781 167 0 0 chrX 136791722 136791842 -25808088 + FLAM_C SINE Alu 2 121 -12 186 43 0 0 chrX 136791845 136791868 -25808062 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 396 0 0 0 chrX 136792193 136792237 -25807693 + (TA)n Simple_repeat Simple_repeat 2 45 0 1593 193 3 3 chrX 136792237 136792532 -25807398 - AluJo SINE Alu -17 295 1 198 174 0 0 chrX 136792892 136792938 -25806992 + (TA)n Simple_repeat Simple_repeat 2 47 0 2171 111 3 0 chrX 136792967 136793265 -25806665 - AluSg SINE Alu -11 299 1 2167 92 11 3 chrX 136793517 136793799 -25806131 - AluSg SINE Alu -26 284 1 2420 69 6 28 chrX 136794704 136795021 -25804909 - AluY SINE Alu 0 311 2 2193 123 0 0 chrX 136795776 136796077 -25803853 - AluSx SINE Alu -7 305 5 1059 201 144 36 chrX 136797568 136797860 -25802070 + L1MB5 LINE L1 5851 6174 0 734 198 0 0 chrX 136797970 136798086 -25801844 + AluJo/FLAM SINE Alu 1 116 -186 2258 89 3 0 chrX 136798086 136798379 -25801551 - AluY SINE Alu -16 295 2 1339 207 14 21 chrX 136798750 136799035 -25800895 - AluJo SINE Alu -19 283 1 200 200 15 0 chrX 136799373 136799438 -25800492 + (TA)n Simple_repeat Simple_repeat 2 67 0 2449 90 0 0 chrX 136799694 136800005 -25799925 + AluY SINE Alu 1 311 0 1995 92 92 0 chrX 136800997 136801279 -25798651 + AluSg SINE Alu 1 308 -2 2379 44 3 7 chrX 136801352 136801647 -25798283 + AluY SINE Alu 5 298 -13 2490 151 102 70 chrX 136803058 136803239 -25796691 + LTR4 LTR ERV1 1 175 -413 2309 105 0 0 chrX 136803239 136803543 -25796387 + AluSq SINE Alu 1 304 -9 2490 151 102 70 chrX 136803543 136803931 -25795999 + LTR4 LTR ERV1 175 588 0 1016 208 9 22 chrX 136803958 136804189 -25795741 + L1MB5 LINE L1 5947 6174 0 809 182 0 0 chrX 136804298 136804441 -25795489 + FLAM_C SINE Alu 1 143 0 229 109 22 22 chrX 136804693 136804739 -25795191 + LTR66 LTR ERVL 393 438 -172 369 225 0 0 chrX 136804744 136804833 -25795097 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 1417 220 0 3 chrX 136804833 136805119 -25794811 - AluJo SINE Alu -27 285 1 2209 107 0 7 chrX 136805373 136805672 -25794258 - AluSc SINE Alu -12 297 1 190 175 0 32 chrX 136805757 136805820 -25794110 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 2321 101 3 0 chrX 136806167 136806475 -25793455 - AluSp SINE Alu 0 313 5 1901 106 4 0 chrX 136806489 136806743 -25793187 - AluSc SINE Alu -18 291 37 1883 147 7 17 chrX 136806873 136807172 -25792758 - AluSx SINE Alu -16 296 1 1192 181 140 24 chrX 136810090 136810383 -25789547 + L1MB5 LINE L1 5848 6174 0 790 179 0 15 chrX 136810489 136810623 -25789307 + FLAM_C SINE Alu 2 133 -10 342 0 0 0 chrX 136810980 136811018 -25788912 + (TA)n Simple_repeat Simple_repeat 2 39 0 1391 208 7 4 chrX 136811018 136811297 -25788633 - AluJo SINE Alu -32 280 1 210 250 45 0 chrX 136811624 136811712 -25788218 + (TA)n Simple_repeat Simple_repeat 1 92 0 2115 123 7 0 chrX 136813640 136813950 -25785980 - AluSx SINE Alu 0 312 1 3264 148 76 17 chrX 136815151 136815741 -25784189 - MER51A LTR ERV1 -9 625 1 7848 158 74 52 chrX 136815743 136816152 -25783778 - MER51A-int LTR ERV1 -1 7815 7416 216 0 0 0 chrX 136816152 136816176 -25783754 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 7848 158 74 52 chrX 136816176 136816638 -25783292 - MER51A-int LTR ERV1 -400 7416 6966 2494 72 0 3 chrX 136816638 136816944 -25782986 - AluY SINE Alu -6 305 1 7848 158 74 52 chrX 136816944 136817991 -25781939 - MER51A-int LTR ERV1 -850 6966 5620 308 157 217 0 chrX 136817981 136818064 -25781866 - MER51A-int LTR ERV1 -2188 5349 5249 * 1228 106 11 0 chrX 136818063 136818242 -25781688 - LOR1-int LTR ERV1 -2572 2645 2465 3363 107 47 19 chrX 136818256 136818788 -25781142 - LTR10A LTR ERV1 -62 547 1 2855 125 62 12 chrX 136818797 136819433 -25780497 - LOR1-int LTR ERV1 -2771 3854 3251 2365 85 0 0 chrX 136819433 136819727 -25780203 - AluSq SINE Alu -14 299 6 2855 125 62 12 chrX 136819727 136819861 -25780069 - LOR1-int LTR ERV1 -3374 3251 1660 2090 107 144 0 chrX 136819843 136820197 -25779733 - LOR1-int LTR ERV1 -4489 3327 2923 * 700 124 50 0 chrX 136820187 136820308 -25779622 - LOR1-int LTR ERV1 -5224 2592 2466 * 238 88 29 0 chrX 136820309 136820343 -25779587 + AluSq SINE Alu 6 40 -262 432 115 16 0 chrX 136820444 136820505 -25779425 + AluSp SINE Alu 97 158 -155 3916 97 19 21 chrX 136820510 136820614 -25779316 - LOR1-int LTR ERV1 -5356 2460 2357 2374 89 3 0 chrX 136820614 136820916 -25779014 - AluSp SINE Alu -8 305 3 3916 97 19 21 chrX 136820916 136821482 -25778448 - LOR1-int LTR ERV1 -5459 2357 1791 451 157 128 62 chrX 136821484 136821656 -25778274 - MER4A LTR ERV1 -147 517 276 461 132 80 94 chrX 136821706 136821740 -25778190 - LOR1-int LTR ERV1 -142 1644 1611 1570 130 25 0 chrX 136821740 136822024 -25777906 + AluSq SINE Alu 40 329 0 461 132 80 94 chrX 136822024 136822105 -25777825 - LOR1-int LTR ERV1 -175 1611 1038 2220 104 0 7 chrX 136822172 136822470 -25777460 + AluSg1 SINE Alu 1 296 -13 1576 214 33 9 chrX 136822559 136822984 -25776946 - L1M2 LINE L1 -4837 2012 1578 3056 155 18 14 chrX 136823010 136823635 -25776295 - LOR1-int LTR ERV1 -6595 1221 512 1523 194 32 4 chrX 136824109 136824388 -25775542 - AluJb SINE Alu -25 287 1 2261 110 7 0 chrX 136824399 136824708 -25775222 - AluSx SINE Alu -1 311 1 207 149 15 30 chrX 136825034 136825101 -25774829 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 1729 133 7 19 chrX 136825117 136825388 -25774542 - AluSq SINE Alu -45 268 1 2915 83 98 5 chrX 136826086 136826496 -25773434 - LTR7 LTR ERV1 -2 448 1 2483 92 48 13 chrX 136826496 136826875 -25773055 - HERVH LTR ERV1 0 7713 7322 1247 121 72 10 chrX 136826873 136827080 -25772850 - HERVH LTR ERV1 -1894 5819 5600 * 4414 141 3 1 chrX 136827081 136827742 -25772188 - HERVH LTR ERV1 -2564 5149 4488 3377 101 6 6 chrX 136827744 136828238 -25771692 - HERVH LTR ERV1 -3720 3993 3500 803 176 20 0 chrX 136828237 136828385 -25771545 - HERVH LTR ERV1 -4423 3290 3140 * 20681 96 9 21 chrX 136828379 136831403 -25768527 - HERVH LTR ERV1 -4726 2987 1 2892 81 90 28 chrX 136831405 136831827 -25768103 - LTR7 LTR ERV1 -2 448 1 443 188 0 0 chrX 136832074 136832159 -25767771 - AluS SINE Alu 0 311 227 2195 116 3 0 chrX 136832236 136832546 -25767384 + AluSq SINE Alu 1 311 -2 1383 201 36 11 chrX 136833582 136833881 -25766049 + AluJb SINE Alu 1 306 0 3401 152 17 4 chrX 136834005 136834524 -25765406 + MER1A DNA MER1_type 1 526 -1 711 191 8 0 chrX 136834613 136834739 -25765191 + MER50 LTR ERV1 2 128 -606 4794 117 14 25 chrX 136834739 136834903 -25765027 + MER41-int LTR ERV1 3416 3580 -2366 2439 88 0 0 chrX 136834903 136835200 -25764730 + AluSg SINE Alu 1 297 -13 4794 117 14 25 chrX 136835200 136835819 -25764111 + MER41-int LTR ERV1 3580 4190 -1756 3704 174 88 6 chrX 136835820 136836498 -25763432 - MER50 LTR ERV1 0 734 1 1936 115 48 0 chrX 136837200 136837494 -25762436 - AluSx SINE Alu 0 307 1 252 59 0 0 chrX 136837732 136837766 -25762164 + (CA)n Simple_repeat Simple_repeat 2 35 0 2264 107 3 0 chrX 136838315 136838624 -25761306 + AluSx SINE Alu 1 310 -2 565 244 0 0 chrX 136839243 136839358 -25760572 + FLAM_C SINE Alu 1 115 -18 619 276 57 62 chrX 136840086 136840473 -25759457 - PABL_B LTR ERV1 0 667 283 2342 88 3 0 chrX 136840609 136840915 -25759015 - AluSp SINE Alu -6 307 1 242 240 0 0 chrX 136841051 136841101 -25758829 - PABL_B LTR ERV1 -617 50 1 24 32 0 0 chrX 136841319 136841350 -25758580 + AT_rich Low_complexity Low_complexity 1 31 0 2875 134 33 17 chrX 136841353 136841875 -25758055 - L1MA4A LINE L1 -3 6300 5771 706 178 34 0 chrX 136841991 136842137 -25757793 - L1 LINE L1 -2768 3378 3228 204 231 0 0 chrX 136842142 136842181 -25757749 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 1938 124 0 0 chrX 136842184 136842449 -25757481 - AluSx SINE Alu -46 266 2 410 204 10 0 chrX 136842449 136842552 -25757378 - L1 LINE L1 -2918 3228 3125 2162 104 3 10 chrX 136842830 136843137 -25756793 - AluSx SINE Alu -6 306 2 25 31 0 0 chrX 136843444 136843476 -25756454 + AT_rich Low_complexity Low_complexity 1 32 0 1773 209 11 27 chrX 136843706 136844074 -25755856 - MLT1A1 LTR MaLR 0 365 4 8538 214 16 44 chrX 136844079 136844153 -25755777 - MLT1A1-int LTR MaLR -2 1733 1658 2338 108 0 0 chrX 136844153 136844459 -25755471 - AluSg SINE Alu -1 309 4 8538 214 16 44 chrX 136844459 136846166 -25753764 - MLT1A1-int LTR MaLR -77 1658 2 1255 249 20 0 chrX 136846179 136846480 -25753450 - MLT1A1 LTR MaLR -12 353 47 5689 64 4 9 chrX 136846514 136847205 -25752725 + L1PA7 LINE L1 5465 6152 -2 4566 157 42 50 chrX 136847252 136847445 -25752485 + MER4D LTR ERV1 6 199 -704 1922 168 7 0 chrX 136847445 136847755 -25752175 + AluSx SINE Alu 1 312 0 4566 157 42 50 chrX 136847755 136848466 -25751464 + MER4D LTR ERV1 199 903 0 2106 172 27 8 chrX 136848470 136848842 -25751088 + MER4D-int LTR ERV1 6 384 -6374 * 5368 144 82 74 chrX 136848839 136850849 -25749081 + MER4D-int LTR ERV1 685 2515 -4243 555 245 45 65 chrX 136850852 136851234 -25748696 + MER4D-int LTR ERV1 2604 2807 -2129 432 142 9 132 chrX 136851394 136851500 -25748430 + MER4D-int LTR ERV1 3776 3868 -4252 485 155 0 0 chrX 136851538 136851609 -25748321 + MER4D-int LTR ERV1 3883 3953 -4167 1795 214 47 30 chrX 136851865 136852272 -25747658 + MER4D-int LTR ERV1 5932 6345 -413 298 125 54 0 chrX 136852340 136852396 -25747534 + MER4D-int LTR ERV1 6373 6431 -327 1111 168 0 0 chrX 136852396 136852569 -25747361 + MER4E LTR ERV1 602 774 -5 1412 194 35 10 chrX 136852635 136852923 -25747007 + MER4D-int LTR ERV1 6443 6737 -21 2110 120 7 13 chrX 136852923 136853086 -25746844 - AluSx SINE Alu -14 298 136 2304 107 0 3 chrX 136853086 136853385 -25746545 - AluSg SINE Alu -12 298 1 2110 120 7 13 chrX 136853385 136853521 -25746409 - AluSx SINE Alu -176 136 1 3472 149 150 89 chrX 136853543 136854348 -25745582 + MER4D LTR ERV1 9 895 -8 1988 105 112 133 chrX 136854535 136854972 -25744958 + MSTA LTR MaLR 1 428 0 6068 247 41 56 chrX 136855030 136856087 -25743843 + L1ME LINE L1 1642 2714 -3501 2202 127 0 0 chrX 136856087 136856386 -25743544 + AluSx SINE Alu 2 300 -12 6068 247 41 56 chrX 136856386 136857060 -25742870 + L1ME LINE L1 2714 3397 -2818 2204 117 0 0 chrX 136857060 136857358 -25742572 - AluSx SINE Alu -14 298 1 6068 247 41 56 chrX 136857358 136857395 -25742535 + L1ME LINE L1 3397 3433 -2782 1456 187 4 0 chrX 136857395 136857636 -25742294 + AluJo SINE Alu 35 276 -36 6068 247 41 56 chrX 136857636 136857861 -25742069 + L1ME LINE L1 3433 3660 -2555 2026 116 0 46 chrX 136857861 136858190 -25741740 + AluSq SINE Alu 1 315 0 6068 247 41 56 chrX 136858190 136859134 -25740796 + L1ME LINE L1 3660 4487 -1728 1106 131 11 11 chrX 136859137 136859313 -25740617 + AluSg/x SINE Alu 122 297 -15 2540 237 73 36 chrX 136859313 136859886 -25740044 + L1ME LINE L1 4495 5111 -1104 2398 84 7 0 chrX 136859886 136860183 -25739747 - AluSx SINE Alu -13 299 1 2540 237 73 36 chrX 136860183 136860460 -25739470 + L1ME LINE L1 5111 5376 -839 1459 213 61 9 chrX 136860475 136860804 -25739126 - MLT1A1 LTR MaLR -19 346 1 1079 252 21 33 chrX 136860804 136861067 -25738863 + L1ME LINE L1 5388 5653 -582 729 102 0 0 chrX 136861067 136861175 -25738755 + (TC)n Simple_repeat Simple_repeat 1 108 0 675 37 0 0 chrX 136861176 136861258 -25738672 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1827 104 14 74 chrX 136861258 136861555 -25738375 - AluSq SINE Alu -20 293 15 1079 252 21 33 chrX 136861555 136861621 -25738309 + L1ME LINE L1 5651 5716 -519 1433 207 8 97 chrX 136861621 136862002 -25737928 - MLT1A1 LTR MaLR 0 365 19 617 236 14 7 chrX 136862017 136862157 -25737773 + L1ME LINE L1 5713 5853 -382 1157 100 17 6 chrX 136862157 136862335 -25737595 - MLT2A2 LTR ERVL -2 451 293 740 125 0 0 chrX 136862335 136862439 -25737491 + AluSc SINE Alu 2 105 -204 1083 294 31 44 chrX 136862439 136862984 -25736946 - L1MEc LINE L1 -4349 2047 1510 239 333 19 0 chrX 136863030 136863135 -25736795 + L1P LINE L1 4885 4991 -1155 733 268 91 5 chrX 136863258 136863456 -25736474 + MER58C DNA MER1_type 1 215 0 2180 103 0 17 chrX 136864339 136864639 -25735291 + AluSx SINE Alu 1 295 -17 207 0 0 0 chrX 136866076 136866099 -25733831 + (TCCCC)n Simple_repeat Simple_repeat 5 27 0 766 258 0 16 chrX 136866615 136866805 -25733125 + MIR SINE MIR 73 259 -3 1831 183 14 33 chrX 136867357 136867724 -25732206 - L1MB7 LINE L1 -19 6165 5806 1992 112 3 20 chrX 136868568 136868891 -25731039 + AluSx SINE Alu 1 312 0 196 373 45 0 chrX 136869103 136869213 -25730717 - L2 LINE L2 0 3313 3199 * 215 241 172 23 chrX 136869187 136869274 -25730656 + L2 LINE L2 3159 3258 -14 281 372 80 0 chrX 136870044 136870181 -25729749 - L2 LINE L2 -3 3269 3122 1441 180 130 88 chrX 136870309 136870709 -25729221 + MER47B DNA MER2_type 2 418 0 598 272 0 25 chrX 136870730 136870888 -25729042 + MIR SINE MIR 105 258 -4 22 0 0 0 chrX 136870888 136870910 -25729020 + AT_rich Low_complexity Low_complexity 1 22 0 2093 98 3 33 chrX 136870978 136871283 -25728647 - AluSq SINE Alu -17 296 1 1997 43 0 8 chrX 136872426 136872661 -25727269 - L1PA8 LINE L1 -1 6171 5939 2120 83 72 0 chrX 136872704 136872982 -25726948 - AluSp SINE Alu -15 298 1 2251 111 0 0 chrX 136873391 136873688 -25726242 - AluSx SINE Alu -15 297 1 43879 32 21 2 chrX 136874097 136880129 -25719801 - L1PA2 LINE L1 -3 6152 1 772 336 46 13 chrX 136880160 136880550 -25719380 - ERVL LTR ERVL -1161 4603 4201 185 62 0 31 chrX 136880589 136880621 -25719309 + (TTATA)n Simple_repeat Simple_repeat 4 34 0 338 97 0 97 chrX 136880621 136880683 -25719247 - Alu SINE Alu -18 282 227 722 59 0 0 chrX 136880720 136880805 -25719125 - AluSc SINE Alu -66 243 159 296 347 58 23 chrX 136880911 136881084 -25718846 - ERVL LTR ERVL -2748 3016 2838 1704 335 75 49 chrX 136881224 136881982 -25717948 - ERVL LTR ERVL -3005 2759 1949 1472 139 6 154 chrX 136881982 136882326 -25717604 + AluJb SINE Alu 1 293 -19 1704 335 75 49 chrX 136882326 136882918 -25717012 - ERVL LTR ERVL -3815 1949 1374 275 307 102 16 chrX 136883016 136883143 -25716787 - ERVL LTR ERVL -3852 1144 1007 912 173 49 158 chrX 136883196 136883606 -25716324 + L1MC4 LINE L1 7677 8041 -1 1907 144 10 3 chrX 136884546 136884837 -25715093 + AluSx SINE Alu 1 293 -19 291 114 0 0 chrX 136884839 136884883 -25715047 + (TG)n Simple_repeat Simple_repeat 2 45 0 14892 142 15 101 chrX 136884935 136888150 -25711780 - L1P LINE L1 -3197 2949 12 420 234 7 142 chrX 136888154 136888428 -25711502 - L1M1 LINE L1 -4030 3535 3299 1043 207 113 59 chrX 136888447 136888789 -25711141 - MLT1A1 LTR MaLR 0 365 1 254 273 0 0 chrX 136888790 136888845 -25711085 - L1 LINE L1 -3510 2636 2582 639 336 108 38 chrX 136888846 136889218 -25710712 + LTR33 LTR ERVL 122 519 -2 7650 155 10 3 chrX 136889467 136891248 -25708682 + L1MA2 LINE L1 3993 5784 -520 584 107 0 0 chrX 136891248 136891323 -25708607 + AluSg/x SINE Alu 214 288 -21 1868 138 28 3 chrX 136891333 136891624 -25708306 + AluJo SINE Alu 1 298 -14 21 36 0 0 chrX 136891827 136891855 -25708075 + AT_rich Low_complexity Low_complexity 1 28 0 3784 92 23 13 chrX 136891878 136892409 -25707521 + L1MA2 LINE L1 5769 6304 0 402 21 0 0 chrX 136893712 136893759 -25706171 + (GA)n Simple_repeat Simple_repeat 2 48 0 6102 138 22 21 chrX 136893915 136894222 -25705708 + L1PA13 LINE L1 4680 4985 -1178 2063 142 0 9 chrX 136894222 136894538 -25705392 + AluSq SINE Alu 1 313 0 6102 138 22 21 chrX 136894538 136895721 -25704209 + L1PA13 LINE L1 4985 6163 0 195 129 0 0 chrX 136897248 136897279 -25702651 + (TCC)n Simple_repeat Simple_repeat 2 32 0 404 269 6 56 chrX 136897499 136897659 -25702271 - MIR SINE MIR -55 207 56 196 209 14 43 chrX 136898345 136898484 -25701446 + (TA)n Simple_repeat Simple_repeat 1 135 0 441 54 0 0 chrX 136898486 136898542 -25701388 + (TG)n Simple_repeat Simple_repeat 2 57 0 455 279 39 108 chrX 136898549 136898856 -25701074 + LTR16A LTR ERVL 2 281 -169 330 26 0 0 chrX 136898861 136898900 -25701030 + (TTCTCC)n Simple_repeat Simple_repeat 5 43 0 1972 136 0 0 chrX 136898900 136899180 -25700750 - AluSx SINE Alu -32 280 1 840 330 75 3 chrX 136899273 136899619 -25700311 + HERV16 LTR ERVL 42 412 -4584 350 316 74 19 chrX 136899624 136899839 -25700091 - L1 LINE L1 -2346 3800 3574 1274 214 31 31 chrX 136899848 136900138 -25699792 + MLT1A1 LTR MaLR 76 365 0 231 108 54 0 chrX 136900165 136900202 -25699728 - MLT1J1 LTR MaLR -22 424 386 3152 217 8 10 chrX 136900202 136900830 -25699100 + MLT1A1-int LTR MaLR 63 689 -1046 319 227 0 15 chrX 136900860 136900926 -25699004 + MLT1A1-int LTR MaLR 819 883 -488 439 212 30 10 chrX 136900990 136901089 -25698841 + MLT-int LTR MaLR 680 780 -955 2137 193 19 38 chrX 136901223 136901647 -25698283 + MLT1A1-int LTR MaLR 1320 1735 0 1588 205 95 21 chrX 136901650 136901987 -25697943 + MLT1A1 LTR MaLR 4 365 0 438 223 64 13 chrX 136901987 136902144 -25697786 - L1 LINE L1 -2792 3354 3190 * 4369 210 41 61 chrX 136902139 136904490 -25695440 - L1MD1 LINE L1 -1 6241 3948 206 234 21 0 chrX 136905394 136905441 -25694489 + L2 LINE L2 3262 3309 -4 3855 64 0 3 chrX 136905714 136906355 -25693575 + L1PA7 LINE L1 4852 5491 -663 2200 95 25 0 chrX 136906355 136906639 -25693291 + AluSc SINE Alu 1 291 -18 4313 66 2 4 chrX 136906639 136907196 -25692734 + L1PA7 LINE L1 5598 6153 -1 2425 84 0 0 chrX 136907857 136908154 -25691776 + AluSq SINE Alu 1 297 -16 454 200 0 0 chrX 136908351 136908451 -25691479 + L1ME2 LINE L1 5353 5452 -722 470 293 20 56 chrX 136908459 136908763 -25691167 + L1ME2 LINE L1 5851 6143 -21 2433 89 8 14 chrX 136909174 136909534 -25690396 - L1PA16 LINE L1 0 6166 5809 1899 130 67 0 chrX 136910615 136910900 -25689030 + AluSg SINE Alu 1 304 -6 351 313 104 22 chrX 136910926 136911108 -25688822 + L2 LINE L2 2205 2401 -913 461 311 91 22 chrX 136911154 136911517 -25688413 + L2 LINE L2 2370 2757 -557 275 324 63 27 chrX 136911552 136911663 -25688267 - L2 LINE L2 0 3313 3199 321 287 31 87 chrX 136911749 136912003 -25687927 + L2 LINE L2 2820 3059 -213 35 0 0 0 chrX 136914179 136914214 -25685716 + AT_rich Low_complexity Low_complexity 1 35 0 2222 108 3 0 chrX 136914214 136914502 -25685428 - AluSp SINE Alu -24 289 1 565 253 120 54 chrX 136915264 136915505 -25684425 - MIR SINE MIR -5 257 1 363 292 77 80 chrX 136915636 136915910 -25684020 + L2 LINE L2 2486 2758 -556 226 373 88 38 chrX 136916153 136916630 -25683300 + L2 LINE L2 1191 1691 -1623 258 32 0 0 chrX 136917285 136917316 -25682614 + (TTCCC)n Simple_repeat Simple_repeat 5 35 0 599 369 95 17 chrX 136917371 136917530 -25682400 + L2 LINE L2 1633 1778 -1536 2828 3 0 0 chrX 136917530 136917834 -25682096 + AluYa5 SINE Alu 1 304 -7 599 369 95 17 chrX 136917834 136918454 -25681476 + L2 LINE L2 1778 2473 -841 274 342 138 20 chrX 136920074 136920270 -25679660 + MIR SINE MIR 8 226 -36 432 356 139 39 chrX 136920883 136921090 -25678840 + L2 LINE L2 2553 2738 -534 668 207 116 35 chrX 136921090 136921288 -25678642 - MER58C DNA MER1_type 0 215 2 432 356 139 39 chrX 136921288 136921741 -25678189 + L2 LINE L2 2738 3269 -3 898 255 17 30 chrX 136922481 136922712 -25677218 - MIR SINE MIR 0 262 35 26 30 0 0 chrX 136923555 136923588 -25676342 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chrX 136925500 136925525 -25674405 + AT_rich Low_complexity Low_complexity 1 25 0 302 273 182 53 chrX 136926145 136926332 -25673598 + MIR SINE MIR 21 231 -31 1148 289 91 19 chrX 136929058 136929477 -25670453 - L2 LINE L2 0 3313 2865 294 294 12 0 chrX 136929477 136929562 -25670368 - MER81 DNA DNA 0 114 29 984 307 43 22 chrX 136929817 136930185 -25669745 - L3 LINE CR1 -672 905 530 556 242 24 0 chrX 136930475 136930599 -25669331 - MER58A DNA MER1_type 0 129 3 793 244 6 17 chrX 136930844 136931024 -25668906 - MER58A DNA MER1_type -40 184 7 374 346 97 18 chrX 136933670 136933887 -25666043 + L2 LINE L2 3038 3271 -1 322 360 50 6 chrX 136934122 136934283 -25665647 - MIR3 SINE MIR -34 174 7 194 368 11 21 chrX 136934281 136934376 -25665554 + MIR SINE MIR 40 133 -75 * 579 336 100 39 chrX 136935930 136936540 -25663390 - L2 LINE L2 -477 2837 2191 734 278 45 91 chrX 136936864 136937400 -25662530 - MLT1J LTR MaLR 0 511 1 2215 216 7 27 chrX 136937643 136938241 -25661689 - L1MA10 LINE L1 -789 5357 4772 2315 147 12 12 chrX 136938250 136938658 -25661272 + L1MA10 LINE L1 5379 5786 -548 1657 72 0 48 chrX 136938662 136938911 -25661019 + L1PA8 LINE L1 5936 6172 0 452 192 10 0 chrX 136938993 136939092 -25660838 + (TA)n Simple_repeat Simple_repeat 1 100 0 2289 154 10 112 chrX 136939092 136939326 -25660604 + L1MA10 LINE L1 5782 6038 -296 2058 149 7 0 chrX 136939326 136939635 -25660295 - AluSx SINE Alu -1 311 1 2289 154 10 112 chrX 136939635 136940005 -25659925 + L1MA10 LINE L1 6038 6324 -10 2351 64 3 0 chrX 136940010 136940316 -25659614 + AluY SINE Alu 1 307 0 485 202 109 0 chrX 136940329 136940448 -25659482 - L1 LINE L1 -1833 4313 4182 34 0 0 0 chrX 136940473 136940507 -25659423 + AT_rich Low_complexity Low_complexity 1 34 0 226 163 0 0 chrX 136940507 136940550 -25659380 - Alu SINE Alu -14 288 246 1267 172 10 45 chrX 136940551 136940842 -25659088 - L1 LINE L1 -1947 4199 3919 289 165 88 19 chrX 136940833 136941097 -25658833 + L1MA9 LINE L1 4307 4644 -1502 * 2403 102 0 0 chrX 136941097 136941402 -25658528 + AluSg SINE Alu 1 305 -5 289 165 88 19 chrX 136941402 136941443 -25658487 + L1MA9 LINE L1 4644 4681 -1465 5216 124 18 60 chrX 136941446 136942423 -25657507 + L1PA16 LINE L1 4726 5638 -528 1922 136 64 25 chrX 136942423 136942784 -25657146 + THE1C LTR MaLR 1 375 0 5216 124 18 60 chrX 136942784 136943292 -25656638 + L1PA16 LINE L1 5638 6166 0 2902 157 11 0 chrX 136943300 136943892 -25656038 + L1MA9 LINE L1 5185 5782 -530 240 195 130 0 chrX 136943920 136943997 -25655933 - L1MC4 LINE L1 -1340 6702 6616 3054 127 23 11 chrX 136944002 136944522 -25655408 + L1MA9 LINE L1 5782 6307 -5 994 206 62 47 chrX 136944592 136944931 -25654999 - MLT1A2 LTR MaLR -13 361 18 2708 110 0 3 chrX 136945296 136945661 -25654269 + THE1B LTR MaLR 1 364 0 1208 76 6 0 chrX 136945839 136946011 -25653919 + L1MA4A LINE L1 6131 6303 0 595 276 11 0 chrX 136946207 136946381 -25653549 - L1MC4 LINE L1 -1944 5864 5689 2152 117 0 0 chrX 136947354 136947665 -25652265 + AluSg SINE Alu 1 311 0 369 326 89 48 chrX 136949874 136950165 -25649765 + L3 LINE CR1 1275 1577 0 734 274 57 27 chrX 136950787 136951083 -25648847 - MLT1I LTR MaLR -5 404 100 255 342 126 60 chrX 136951116 136951800 -25648130 + L2 LINE L2 2120 2848 -466 625 219 0 0 chrX 136951882 136951996 -25647934 + MER81 DNA DNA 1 114 0 340 331 116 0 chrX 136952262 136952383 -25647547 + L2 LINE L2 3133 3267 -5 220 293 181 53 chrX 136953265 136953398 -25646532 + L2 LINE L2 3107 3256 -16 2363 58 0 7 chrX 136953514 136953809 -25646121 - AluY SINE Alu -18 293 1 979 185 0 0 chrX 136953972 136954129 -25645801 - FRAM SINE Alu -20 156 1 643 301 136 0 chrX 136954481 136954694 -25645236 + MIR SINE MIR 3 244 -18 218 300 11 56 chrX 136954733 136954823 -25645107 + L3 LINE CR1 1489 1574 -3 544 303 152 22 chrX 136955787 136956018 -25643912 + MIR SINE MIR 2 262 0 2365 248 61 16 chrX 136956812 136957502 -25642428 - L1ME2 LINE L1 -1 6097 5377 371 172 64 3 chrX 136957510 136957604 -25642326 - L1MD3 LINE L1 -1 8038 7907 1214 177 0 5 chrX 136957608 136957823 -25642107 + AluJo SINE Alu 85 298 -14 1078 238 80 7 chrX 136957835 136958316 -25641614 - L1ME2 LINE L1 -728 5370 4863 934 224 70 0 chrX 136958319 136958520 -25641410 + MER58C DNA MER1_type 1 215 0 889 315 39 47 chrX 136958520 136959389 -25640541 - L1ME2 LINE L1 -4452 1809 948 * 42147 32 26 10 chrX 136959385 136965440 -25634490 - L1PA2 LINE L1 -2 6153 4 279 216 30 45 chrX 136965436 136965570 -25634360 - L1ME2 LINE L1 -5144 926 795 * 658 162 36 0 chrX 136965578 136965689 -25634241 - Tigger3(Golem) DNA MER2_type -2 3027 2913 552 161 0 0 chrX 136965699 136965780 -25634150 - Tigger3(Golem) DNA MER2_type -2948 81 1 2201 285 52 11 chrX 136965784 136966536 -25633394 - L1ME2 LINE L1 -5285 785 3 1329 251 56 13 chrX 136966536 136967058 -25632872 - L1ME LINE L1 -2874 3206 2663 417 251 110 37 chrX 136967112 136967522 -25632408 - L1ME LINE L1 -5075 995 556 1888 154 0 7 chrX 136967712 136967998 -25631932 + AluJo SINE Alu 1 284 -28 866 280 41 44 chrX 136968151 136968457 -25631473 - L1ME LINE L1 -5670 400 94 6608 130 56 19 chrX 136968457 136969644 -25630286 - Tigger3b DNA MER2_type 0 1231 1 866 280 41 44 chrX 136969644 136969726 -25630204 - L1ME LINE L1 -5976 94 13 2753 279 42 14 chrX 136969991 136970830 -25629100 + L2 LINE L2 1925 2786 -528 6006 261 34 24 chrX 136970843 136973557 -25626373 + L1M4 LINE L1 14 2900 -3925 5256 213 26 11 chrX 136973578 136975081 -25624849 + L1M4 LINE L1 4511 6038 -644 519 160 0 19 chrX 136975201 136975307 -25624623 + L1MB7 LINE L1 6076 6179 -5 206 244 0 0 chrX 136975319 136975360 -25624570 + L2 LINE L2 2773 2813 -501 495 314 168 8 chrX 136975363 136975773 -25624157 + L2 LINE L2 2783 3287 -26 539 318 65 61 chrX 136975879 136976357 -25623573 + L2 LINE L2 2833 3312 -1 3811 169 38 1 chrX 136976564 136977281 -25622649 + L1MA5 LINE L1 5556 6298 -2 451 259 71 29 chrX 136977300 136977470 -25622460 - MIR SINE MIR 0 262 86 23 33 0 0 chrX 136977799 136977829 -25622101 + AT_rich Low_complexity Low_complexity 1 30 0 548 314 43 19 chrX 136979251 136979461 -25620469 - MIR SINE MIR -16 246 32 25 31 0 0 chrX 136979531 136979563 -25620367 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chrX 136979958 136979988 -25619942 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 136980033 136980055 -25619875 + AT_rich Low_complexity Low_complexity 1 22 0 559 68 0 0 chrX 136980408 136980482 -25619448 + L1PA7 LINE L1 6074 6147 -7 187 329 73 44 chrX 136981427 136981564 -25618366 - L2 LINE L2 0 3313 3173 255 139 0 23 chrX 136981609 136981652 -25618278 + MIR3 SINE MIR 115 156 -52 1075 308 93 68 chrX 136981807 136982336 -25617594 + L2 LINE L2 2471 2992 -280 1728 75 75 26 chrX 136982336 136982601 -25617329 - L1PA8 LINE L1 -4 6168 5891 1075 308 93 68 chrX 136982601 136982886 -25617044 + L2 LINE L2 2992 3268 -4 2204 94 0 45 chrX 136983164 136983472 -25616458 - AluSx SINE Alu -18 294 1 575 298 60 0 chrX 136984819 136984987 -25614943 + MIR SINE MIR 2 179 -83 343 322 33 8 chrX 136985133 136985254 -25614676 + L2 LINE L2 3190 3313 0 7592 29 8 0 chrX 136985927 136987213 -25612717 - L1PA3 LINE L1 0 6155 4866 34157 45 1 3 chrX 136987213 136991434 -25608496 - L1PA3 LINE L1 -1930 4216 2 2326 91 0 6 chrX 136991462 136991792 -25608138 + L1PA8 LINE L1 5845 6172 0 351 197 133 5 chrX 136992266 136992446 -25607484 + MER5C DNA MER1_type 31 323 -1 477 335 90 51 chrX 136992458 136993293 -25606637 - L2 LINE L2 -7 3306 2450 469 306 68 27 chrX 136993314 136993540 -25606390 - MIR SINE MIR -21 241 7 919 213 62 31 chrX 136993717 136993966 -25605964 - MIR SINE MIR 0 262 9 305 267 89 88 chrX 136994019 136994215 -25605715 + MIR3 SINE MIR 13 203 -59 389 345 20 20 chrX 136994296 136994444 -25605486 + L2 LINE L2 3122 3269 -3 219 226 38 113 chrX 136994556 136994662 -25605268 - MIR SINE MIR -28 234 137 278 282 58 92 chrX 136994692 136994848 -25605082 + MLT2E LTR ERVL 22 162 -361 330 169 65 26 chrX 136995067 136995144 -25604786 + LTR33A LTR ERVL 444 523 0 224 308 188 8 chrX 136995145 136995262 -25604668 - MIR SINE MIR -123 139 2 349 222 34 26 chrX 136995773 136995890 -25604040 + L1MC4a LINE L1 5822 5939 -1869 420 325 59 18 chrX 136995917 136996086 -25603844 - MIR3 SINE MIR -15 193 18 240 302 63 0 chrX 136996426 136996489 -25603441 + L2 LINE L2 3206 3272 0 3941 36 11 0 chrX 136996586 136997063 -25602867 + L1PA3 LINE L1 5674 6155 0 413 312 16 65 chrX 136997374 136997560 -25602370 + MIR3 SINE MIR 9 185 -23 1421 238 42 26 chrX 136997654 136998090 -25601840 + L1ME1 LINE L1 5724 6161 -5 388 311 108 6 chrX 136998186 136998353 -25601577 + MIR SINE MIR 75 258 -4 198 351 96 11 chrX 136998422 136998516 -25601414 + MIR SINE MIR 46 147 -61 578 298 43 38 chrX 137000827 137001062 -25598868 + L2 LINE L2 3077 3312 -1 1214 252 36 107 chrX 137001083 137001281 -25598649 + L2 LINE L2 2536 2746 -567 941 232 13 0 chrX 137001281 137001514 -25598416 - L1MA10 LINE L1 -14 6320 6085 1214 252 36 107 chrX 137001514 137002141 -25597789 + L2 LINE L2 2746 3310 -3 357 277 77 8 chrX 137002300 137002430 -25597500 + MIR3 SINE MIR 63 201 -7 2340 93 0 0 chrX 137002608 137002908 -25597022 - AluSx SINE Alu -12 300 1 429 218 0 0 chrX 137005832 137005910 -25594020 - L2 LINE L2 0 3272 3195 315 0 0 0 chrX 137005913 137005948 -25593982 + (CAA)n Simple_repeat Simple_repeat 2 36 0 542 125 11 0 chrX 137005956 137006044 -25593886 - L1 LINE L1 -1956 4190 4102 1383 97 48 9 chrX 137006144 137006371 -25593559 + L1MA2 LINE L1 6069 6304 0 1929 151 0 42 chrX 137006723 137007035 -25592895 - AluJo SINE Alu -13 299 1 356 211 14 0 chrX 137007190 137007261 -25592669 + MIR SINE MIR 183 254 -8 434 298 15 18 chrX 137007301 137007437 -25592493 - MIR SINE MIR -67 141 21 320 250 198 0 chrX 137007742 137007858 -25592072 + MIR3 SINE MIR 64 202 -6 282 268 28 0 chrX 137009002 137009073 -25590857 + MIR SINE MIR 43 115 -93 6444 107 36 5 chrX 137009215 137010381 -25589549 - L1MA2 LINE L1 -1 6303 5101 4315 223 50 14 chrX 137010512 137011783 -25588147 - L1M4 LINE L1 -891 5255 3940 2026 133 110 45 chrX 137012957 137013357 -25586573 - MSTA LTR MaLR -2 426 1 39932 60 1 0 chrX 137013501 137019630 -25580300 - L1PA5 LINE L1 -12 6142 11 182 33 67 0 chrX 137020381 137020411 -25579519 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2138 113 7 0 chrX 137021099 137021391 -25578539 + AluSx SINE Alu 1 294 -18 2448 117 3 17 chrX 137021968 137022328 -25577602 - THE1A LTR MaLR 0 355 1 11830 89 5 2 chrX 137022328 137023903 -25576027 - THE1A-int LTR MaLR 0 1580 1 2627 96 3 3 chrX 137023903 137024258 -25575672 - THE1A LTR MaLR 0 355 1 459 265 0 66 chrX 137024933 137025114 -25574816 + HAL1b LINE L1 380 548 -800 702 155 7 54 chrX 137025130 137025278 -25574652 - MLT1E2 LTR MaLR 0 626 486 340 242 0 129 chrX 137025273 137025459 -25574471 - MLT1E2 LTR MaLR -452 174 13 * 689 305 97 29 chrX 137025628 137026008 -25573922 - MLT1J2 LTR MaLR 0 450 45 2195 124 0 3 chrX 137026083 137026381 -25573549 - AluSx SINE Alu -15 297 1 280 271 52 0 chrX 137026959 137027055 -25572875 + L1MEc LINE L1 52 152 -6244 2199 144 0 19 chrX 137027058 137027425 -25572505 - MLT1A1 LTR MaLR 0 365 6 1887 264 68 10 chrX 137027428 137028035 -25571895 + L1MEc LINE L1 149 790 -5606 * 1925 211 24 79 chrX 137028030 137028702 -25571228 + L1ME1 LINE L1 5527 6312 0 3360 264 162 48 chrX 137029042 137031089 -25568841 + L1PA15 LINE L1 10 2289 -5292 4865 26 0 2 chrX 137031089 137031659 -25568271 - L1PA4 LINE L1 0 6155 5587 11889 184 22 15 chrX 137031659 137035504 -25564426 + L1PA15 LINE L1 2272 6254 -1330 1996 126 3 88 chrX 137035504 137035846 -25564084 + AluSq SINE Alu 1 313 0 11889 184 22 15 chrX 137035846 137036063 -25563867 + L1PA15 LINE L1 6254 6468 -1116 3841 127 24 6 chrX 137036070 137036699 -25563231 + L1PA15 LINE L1 6943 7582 -21 3114 78 2 7 chrX 137036820 137037242 -25562688 - L1PA8A LINE L1 -3 6128 5709 546 224 60 24 chrX 137037351 137037737 -25562193 + L1ME3A LINE L1 5716 6162 -8 344 338 78 7 chrX 137038193 137038335 -25561595 + MER5A DNA MER1_type 27 189 0 276 319 130 0 chrX 137038378 137038585 -25561345 + L1M4 LINE L1 3646 3879 -2267 10171 24 0 0 chrX 137038791 137040763 -25559167 - L1PA2 LINE L1 0 6155 4184 214 195 117 78 chrX 137040973 137041050 -25558880 + L2 LINE L2 3193 3272 0 207 0 0 0 chrX 137041429 137041452 -25558478 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 2233 136 56 30 chrX 137042027 137042546 -25557384 + MLT2A2 LTR ERVL 1 554 0 390 268 64 47 chrX 137042637 137042818 -25557112 - L1ME LINE L1 -660 5502 5313 1774 113 96 21 chrX 137042818 137043153 -25556777 - MER46B DNA MER2_type -1 235 1 390 268 64 47 chrX 137043153 137043270 -25556660 - L1ME LINE L1 -849 5313 5199 25 0 0 0 chrX 137043395 137043420 -25556510 + AT_rich Low_complexity Low_complexity 1 25 0 2213 139 0 0 chrX 137043481 137043835 -25556095 - AluSx SINE Alu 0 354 1 336 288 83 22 chrX 137043905 137044134 -25555796 - L1ME LINE L1 -1334 4812 4570 319 226 103 55 chrX 137044183 137044329 -25555601 - L1MDa LINE L1 -1639 4901 4749 414 0 0 0 chrX 137044360 137044406 -25555524 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 589 152 19 29 chrX 137044406 137044511 -25555419 + FRAM SINE Alu 51 154 -22 1110 285 65 78 chrX 137044517 137045216 -25554714 - L1MDa LINE L1 -1785 4755 4049 301 23 45 0 chrX 137045216 137045260 -25554670 + MADE1 DNA Mariner 1 46 -34 1110 285 65 78 chrX 137045260 137045444 -25554486 - L1MDa LINE L1 -2491 4049 3864 2069 119 74 8 chrX 137045444 137045796 -25554134 + THE1C LTR MaLR 1 375 0 1110 285 65 78 chrX 137045796 137046385 -25553545 - L1MDa LINE L1 -2676 3864 3269 7671 23 0 4 chrX 137046385 137047958 -25551972 + L1PA4 LINE L1 4587 6155 0 1110 285 65 78 chrX 137047958 137048709 -25551221 - L1MDa LINE L1 -3271 3269 2515 2661 155 2 16 chrX 137048806 137049244 -25550686 - MSTB1 LTR MaLR 0 432 1 382 326 62 25 chrX 137049529 137049771 -25550159 - L1MDa LINE L1 -4440 2100 1850 791 250 9 5 chrX 137053665 137053889 -25546041 + L1MA9 LINE L1 5924 6148 -164 5717 152 14 4 chrX 137053899 137054257 -25545673 - L1PB1 LINE L1 0 6867 6514 477 50 0 0 chrX 137054257 137054317 -25545613 + (TA)n Simple_repeat Simple_repeat 1 60 0 5717 152 14 4 chrX 137054317 137055546 -25544384 - L1PB1 LINE L1 -353 6514 5265 29 0 0 0 chrX 137055552 137055581 -25544349 + AT_rich Low_complexity Low_complexity 1 29 0 7795 31 0 1 chrX 137055581 137057283 -25542647 - L1PA3 LINE L1 -3 6152 4452 5061 24 0 0 chrX 137057283 137057878 -25542052 + L1PA3 LINE L1 3840 4434 -1712 * 11553 183 9 8 chrX 137057875 137060374 -25539556 - L1PB1 LINE L1 -1584 5278 2780 1177 112 53 53 chrX 137060391 137060579 -25539351 - THE1B LTR MaLR 0 364 177 894 140 0 109 chrX 137060582 137060775 -25539155 - AluSq SINE Alu -5 308 137 1063 137 89 0 chrX 137060778 137060946 -25538984 - THE1B LTR MaLR -181 183 1 11308 112 1 6 chrX 137060946 137062534 -25537396 - THE1B-int LTR MaLR 0 1580 1 2070 136 72 17 chrX 137062534 137062879 -25537051 - THE1B LTR MaLR 0 364 1 8533 134 67 8 chrX 137062879 137065184 -25534746 - L1PB1 LINE L1 -4145 2718 3 412 231 7 63 chrX 137065190 137065210 -25534720 + L1MA9 LINE L1 6134 6154 -158 2364 126 31 14 chrX 137065210 137065566 -25534364 - THE1B LTR MaLR -2 362 1 412 231 7 63 chrX 137065566 137065688 -25534242 + L1MA9 LINE L1 6154 6268 -44 182 152 0 22 chrX 137066203 137066249 -25533681 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 195 42 0 0 chrX 137066601 137066625 -25533305 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 405 336 168 0 chrX 137067596 137067745 -25532185 + MER5A DNA MER1_type 10 183 -6 233 418 13 4 chrX 137067770 137068007 -25531923 + L2 LINE L2 2349 2587 -727 204 79 0 53 chrX 137068050 137068088 -25531842 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 190 369 28 35 chrX 137068539 137068680 -25531250 + L2 LINE L2 3133 3272 0 287 265 0 0 chrX 137069297 137069365 -25530565 - MIR SINE MIR -25 237 170 19151 55 27 0 chrX 137070151 137072647 -25527283 + L1P LINE L1 2633 5196 -950 4168 23 8 0 chrX 137072647 137073134 -25526796 + L1PA4 LINE L1 5662 6152 -3 5628 170 19 13 chrX 137073138 137074415 -25525515 + L1MA7 LINE L1 5063 6285 -6 4546 169 39 51 chrX 137074445 137075441 -25524489 + L1MC2 LINE L1 5353 6336 -8 459 78 0 0 chrX 137076890 137076954 -25522976 - L1PA5 LINE L1 0 6154 6091 34580 64 95 11 chrX 137076956 137077933 -25521997 - L1PA5 LINE L1 -145 6009 5116 266 182 0 0 chrX 137077933 137078005 -25521925 - Alu SINE Alu 0 309 238 34580 64 95 11 chrX 137078005 137082522 -25517408 - L1PA5 LINE L1 -1038 5116 4 9910 213 57 71 chrX 137082526 137084484 -25515446 - L1MCa LINE L1 -895 5531 3548 2018 140 7 0 chrX 137084484 137084777 -25515153 - AluSx SINE Alu -13 299 5 9910 213 57 71 chrX 137084777 137085805 -25514125 - L1MCa LINE L1 -2878 3548 2507 1955 165 128 8 chrX 137085805 137086187 -25513743 - MSTA LTR MaLR 0 428 1 9910 213 57 71 chrX 137086187 137087788 -25512142 - L1MCa LINE L1 -3919 2507 886 1350 84 5 5 chrX 137087788 137087978 -25511952 + L1PA7 LINE L1 5959 6148 -6 9910 213 57 71 chrX 137087978 137088319 -25511611 - L1MCa LINE L1 -5540 886 542 1594 200 60 17 chrX 137088319 137088669 -25511261 - MLT1A1 LTR MaLR 0 365 1 9910 213 57 71 chrX 137088669 137089327 -25510603 - L1MCa LINE L1 -5884 542 20 2034 275 25 33 chrX 137089397 137090037 -25509893 + L1MB7 LINE L1 156 790 -5752 * 7017 244 60 26 chrX 137090032 137091995 -25507935 + L1MB7 LINE L1 2737 4631 -2013 198 0 0 0 chrX 137091995 137092017 -25507913 + (CA)n Simple_repeat Simple_repeat 1 22 0 7017 244 60 26 chrX 137092017 137092291 -25507639 + L1MB7 LINE L1 4631 4894 -1750 2091 118 3 0 chrX 137092291 137092580 -25507350 + AluSx SINE Alu 1 290 -22 7017 244 60 26 chrX 137092580 137092772 -25507158 + L1MB7 LINE L1 4894 5078 -1566 10583 44 1 0 chrX 137092772 137094819 -25505111 - L1PA4 LINE L1 -4 6151 4073 7017 244 60 26 chrX 137094819 137095290 -25504640 + L1MB7 LINE L1 5078 5825 -819 444 131 12 0 chrX 137095293 137095377 -25504553 + L1PA15 LINE L1 6080 6164 -1 1278 193 0 5 chrX 137095386 137095598 -25504332 + AluJo SINE Alu 72 282 -30 3840 186 28 10 chrX 137095604 137096398 -25503532 + L1MB7 LINE L1 5813 6620 -62 194 214 143 57 chrX 137096558 137096628 -25503302 + L3 LINE CR1 526 601 -976 1808 166 0 0 chrX 137098298 137098576 -25501354 + AluSx SINE Alu 3 280 -32 1006 79 26 0 chrX 137098576 137098728 -25501202 + (GAAA)n Simple_repeat Simple_repeat 4 159 0 462 125 0 0 chrX 137098729 137098809 -25501121 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 1985 74 37 17 chrX 137098864 137099162 -25500768 - L1PA13 LINE L1 -5 6158 5855 283 290 60 0 chrX 137099163 137099263 -25500667 - L1MEc LINE L1 -4659 1737 1632 396 343 103 33 chrX 137099534 137099930 -25500000 + L2 LINE L2 2359 2782 -532 266 337 31 10 chrX 137102744 137102842 -25497088 - MIR3 SINE MIR -5 203 104 224 222 37 19 chrX 137103342 137103396 -25496534 - MER5B DNA MER1_type 0 178 124 588 246 127 37 chrX 137103403 137103647 -25496283 + L1ME1 LINE L1 5896 6161 -5 188 386 68 0 chrX 137104470 137104558 -25495372 + L2 LINE L2 3138 3231 -41 1183 191 81 21 chrX 137105249 137105484 -25494446 + AluJb SINE Alu 52 300 -12 3225 92 18 0 chrX 137105670 137106117 -25493813 - L1PA10 LINE L1 -11 6157 5703 29 60 0 0 chrX 137106214 137106264 -25493666 + AT_rich Low_complexity Low_complexity 1 50 0 491 183 10 0 chrX 137106282 137106386 -25493544 + L1PA16 LINE L1 5930 6034 -132 2855 24 0 3 chrX 137107093 137107425 -25492505 + L1PA5 LINE L1 5821 6151 -3 382 335 90 0 chrX 137107772 137107939 -25491991 - MIR SINE MIR -11 251 70 246 333 60 8 chrX 137108478 137108595 -25491335 - L2 LINE L2 0 3272 3150 1720 172 3 17 chrX 137109258 137109548 -25490382 - AluJb SINE Alu -26 286 1 35 24 0 0 chrX 137109664 137109706 -25490224 + AT_rich Low_complexity Low_complexity 1 42 0 29913 105 13 56 chrX 137109706 137116135 -25483795 - L1PA7 LINE L1 0 6154 18 869 68 40 23 chrX 137116733 137116755 -25483175 + (GGA)n Simple_repeat Simple_repeat 1 201 0 869 68 40 23 chrX 137116755 137116931 -25482999 + (GGA)n Simple_repeat Simple_repeat 2 180 0 374 203 8 110 chrX 137117096 137117214 -25482716 - MER5C DNA MER1_type -218 106 1 305 314 73 93 chrX 137117795 137118342 -25481588 - L2 LINE L2 -21 3251 2713 193 374 11 0 chrX 137118352 137118443 -25481487 + MIR SINE MIR 98 189 -73 216 158 0 0 chrX 137118510 137118548 -25481382 + CT-rich Low_complexity Low_complexity 3 40 0 599 232 16 0 chrX 137119952 137120077 -25479853 + L2 LINE L2 3177 3303 -10 192 328 144 8 chrX 137120129 137120254 -25479676 + MIR SINE MIR 73 214 -48 284 308 101 31 chrX 137120517 137120676 -25479254 - L2 LINE L2 -1313 2001 1832 848 291 8 24 chrX 137120699 137120950 -25478980 - MIR SINE MIR -14 248 2 238 250 0 0 chrX 137121056 137121100 -25478830 - MIR SINE MIR -168 94 51 2230 101 24 0 chrX 137122426 137122723 -25477207 + AluSq SINE Alu 1 304 -9 654 238 6 31 chrX 137122737 137122897 -25477033 - MIR SINE MIR -20 242 87 1476 315 113 42 chrX 137123068 137124197 -25475733 + L2 LINE L2 1437 2645 -669 5018 87 16 0 chrX 137124246 137124939 -25474991 - L1PA11 LINE L1 -1 6173 5470 600 383 54 16 chrX 137125013 137125386 -25474544 + L2 LINE L2 2886 3272 0 251 301 142 68 chrX 137125435 137125654 -25474276 - L2 LINE L2 -212 3060 2826 575 265 33 0 chrX 137126506 137126657 -25473273 + MIR3 SINE MIR 52 207 -1 1474 156 39 80 chrX 137128909 137129299 -25470631 + MLT1A2 LTR MaLR 1 374 0 2700 169 30 90 chrX 137129454 137129966 -25469964 - L1MA4A LINE L1 -56 6247 5706 2722 139 0 5 chrX 137129966 137130397 -25469533 - L1PA13 LINE L1 -6 6157 5729 2700 169 30 90 chrX 137130397 137130770 -25469160 - L1MA4A LINE L1 -597 5706 5542 2012 131 13 3 chrX 137130770 137131068 -25468862 - AluSx SINE Alu -11 301 1 2700 169 30 90 chrX 137131068 137131260 -25468670 - L1MA4A LINE L1 -761 5542 5340 391 127 14 0 chrX 137131255 137131326 -25468604 - L1PA12 LINE L1 -5812 1769 1698 * 286 364 40 12 chrX 137131630 137131976 -25467954 - L1PA12 LINE L1 -5501 2080 1725 * 2537 127 62 4 chrX 137131971 137132625 -25467305 - L1M1 LINE L1 -563 5740 5052 1215 158 14 5 chrX 137132626 137132848 -25467082 - MER41B LTR ERV1 -86 549 326 306 143 0 0 chrX 137132849 137132905 -25467025 - L1M1 LINE L1 -1087 5059 5004 666 152 9 0 chrX 137132905 137133010 -25466920 + MSTB LTR MaLR 1 106 -320 * 1032 150 20 40 chrX 137133008 137133208 -25466722 + MSTB LTR MaLR 231 426 0 695 145 0 0 chrX 137133208 137133325 -25466605 - L1M1 LINE L1 -1138 5008 4892 * 2488 194 4 4 chrX 137133314 137133768 -25466162 - L1M2 LINE L1 -6395 454 1 1303 316 79 3 chrX 137133778 137134330 -25465600 - L2 LINE L2 -238 3075 2489 2108 273 131 20 chrX 137134417 137135651 -25464279 - HAL1 LINE L1 -1070 1437 68 469 249 86 66 chrX 137135700 137135897 -25464033 + L2 LINE L2 3113 3313 0 21 36 0 0 chrX 137135902 137135930 -25464000 + AT_rich Low_complexity Low_complexity 1 28 0 274 359 71 46 chrX 137136086 137136367 -25463563 - L2 LINE L2 -592 2722 2435 411 229 112 12 chrX 137136690 137136815 -25463115 + MIR SINE MIR 33 145 -63 559 290 121 30 chrX 137136956 137137187 -25462743 - MIR SINE MIR -8 254 3 268 321 121 18 chrX 137137229 137137394 -25462536 - MIR3 SINE MIR -8 200 19 325 363 38 62 chrX 137138833 137139122 -25460808 + L2 LINE L2 2973 3254 -18 548 101 13 0 chrX 137139522 137139601 -25460329 + MADE1 DNA Mariner 1 80 0 623 315 100 38 chrX 137139790 137140402 -25459528 - L1M4 LINE L1 -1090 5056 4407 993 156 69 73 chrX 137140522 137140593 -25459337 - L1MB8 LINE L1 0 6178 6108 2167 116 3 13 chrX 137140593 137140894 -25459036 + AluSx SINE Alu 1 298 -14 993 156 69 73 chrX 137140894 137141097 -25458833 - L1MB8 LINE L1 -70 6108 5905 518 268 116 0 chrX 137141118 137141282 -25458648 - MIR SINE MIR -9 253 71 514 288 0 65 chrX 137141546 137141699 -25458231 - MIR3 SINE MIR 0 208 66 560 257 11 20 chrX 137141788 137141944 -25457986 + MIR3 SINE MIR 11 167 -41 23 0 0 0 chrX 137142437 137142460 -25457470 + AT_rich Low_complexity Low_complexity 1 23 0 352 279 53 84 chrX 137142821 137143039 -25456891 - MIR3 SINE MIR -51 211 3 189 0 0 0 chrX 137143234 137143255 -25456675 + (TC)n Simple_repeat Simple_repeat 2 22 0 306 125 0 0 chrX 137143255 137143303 -25456627 + (TG)n Simple_repeat Simple_repeat 2 49 0 460 328 57 16 chrX 137143502 137143694 -25456236 - MIR SINE MIR -44 218 19 909 208 25 0 chrX 137143747 137143944 -25455986 - L1PA16 LINE L1 -1 6165 5964 25 31 0 0 chrX 137146243 137146275 -25453655 + AT_rich Low_complexity Low_complexity 1 32 0 630 315 125 22 chrX 137147335 137147792 -25452138 + L2 LINE L2 2250 2753 -561 24 0 0 0 chrX 137148619 137148643 -25451287 + AT_rich Low_complexity Low_complexity 1 24 0 365 329 20 34 chrX 137148780 137148929 -25451001 - MIR3 SINE MIR -51 157 11 2759 305 59 18 chrX 137149170 137150085 -25449845 - MER45C DNA AcHobo 0 953 1 842 297 4 11 chrX 137150119 137150382 -25449548 + MIR SINE MIR 2 262 0 535 260 113 31 chrX 137152292 137152454 -25447476 - L1ME4a LINE L1 -2 6513 6366 216 0 0 0 chrX 137152454 137152478 -25447452 + (TG)n Simple_repeat Simple_repeat 2 25 0 535 260 113 31 chrX 137152478 137152634 -25447296 - L1ME4a LINE L1 -149 6366 6169 233 326 22 22 chrX 137154051 137154140 -25445790 + MIR SINE MIR 117 205 -57 2239 92 0 3 chrX 137155005 137155308 -25444622 + AluY SINE Alu 1 302 -9 2570 173 25 91 chrX 137155314 137155685 -25444245 + L1MB7 LINE L1 5497 5804 -380 2456 107 114 5 chrX 137155685 137156070 -25443860 - MSTA LTR MaLR 0 428 2 2570 173 25 91 chrX 137156070 137156382 -25443548 + L1MB7 LINE L1 5804 6135 -49 378 98 0 0 chrX 137156418 137156479 -25443451 + L1MB8 LINE L1 6115 6175 -3 293 194 0 65 chrX 137156792 137156885 -25443045 + L1MB7 LINE L1 5189 5275 -871 3540 187 29 14 chrX 137156889 137157626 -25442304 + L1MB7 LINE L1 5437 6184 0 745 215 45 10 chrX 137157940 137158140 -25441790 - L1ME4a LINE L1 -1988 6214 6008 29 28 0 0 chrX 137158198 137158234 -25441696 + AT_rich Low_complexity Low_complexity 1 36 0 237 238 22 18 chrX 137158282 137158418 -25441512 - L1ME4a LINE L1 -809 5749 5610 2169 214 36 4 chrX 137158485 137159047 -25440883 - L1ME4a LINE L1 -2931 3609 3030 1740 238 67 26 chrX 137159043 137159623 -25440307 + L1MD2 LINE L1 5743 6346 -13 * 358 248 57 0 chrX 137159640 137159745 -25440185 - L1ME4a LINE L1 -3498 3042 2932 42712 34 21 2 chrX 137159751 137165786 -25434144 + L1PA3 LINE L1 1 6155 0 3437 192 102 131 chrX 137165803 137166141 -25433789 - L1MDa LINE L1 -3599 2941 2595 1662 146 0 38 chrX 137166141 137166450 -25433480 + AluSx SINE Alu 31 329 0 3437 192 102 131 chrX 137166450 137166664 -25433266 - L1MDa LINE L1 -3945 2595 2376 336 70 0 0 chrX 137166664 137166707 -25433223 + U2 snRNA snRNA 1 43 -145 3437 192 102 131 chrX 137166707 137167452 -25432478 - L1MDa LINE L1 -4164 2376 1575 544 241 9 0 chrX 137167452 137167568 -25432362 - FLAM_C SINE Alu -26 117 1 3437 192 102 131 chrX 137167568 137168266 -25431664 - L1MDa LINE L1 -4965 1575 858 1643 274 87 8 chrX 137168292 137168788 -25431142 - L1MDa LINE L1 -5980 560 26 447 260 72 39 chrX 137168783 137169145 -25430785 - L1M4 LINE L1 -976 5170 4797 * 24 0 0 0 chrX 137169336 137169360 -25430570 + AT_rich Low_complexity Low_complexity 1 24 0 1250 184 0 23 chrX 137169627 137169845 -25430085 + AluJb SINE Alu 84 296 -16 920 162 66 51 chrX 137169900 137170097 -25429833 - AluJo SINE Alu -7 305 106 344 278 61 0 chrX 137170307 137170422 -25429508 - L1MC4 LINE L1 -2 8040 7919 237 33 0 0 chrX 137170434 137170464 -25429466 + (CA)n Simple_repeat Simple_repeat 1 30 0 4395 246 69 19 chrX 137170555 137171761 -25428169 - L1MC4 LINE L1 -158 7884 6601 204 97 0 0 chrX 137171761 137171792 -25428138 + (TG)n Simple_repeat Simple_repeat 2 32 0 4395 246 69 19 chrX 137171792 137171944 -25427986 - L1MC4 LINE L1 -1441 6601 6458 297 305 100 67 chrX 137172146 137172667 -25427263 - L1M4 LINE L1 -1917 4229 3692 290 218 39 39 chrX 137172751 137172829 -25427101 + L1MCa LINE L1 1 78 -6348 3181 191 22 25 chrX 137172883 137173651 -25426279 + L1M4 LINE L1 4328 5093 -1053 1146 206 0 9 chrX 137173642 137173861 -25426069 + L1MC3 LINE L1 6724 6940 -845 * 1613 168 7 0 chrX 137174057 137174354 -25425576 - L1MA8 LINE L1 -6 6285 5987 1765 110 67 0 chrX 137175930 137176184 -25423746 - AluSx SINE Alu -4 308 38 285 253 13 0 chrX 137178308 137178383 -25421547 - L2 LINE L2 -4 3309 3234 566 258 108 5 chrX 137178553 137178739 -25421191 + MIR SINE MIR 18 222 -40 323 174 0 58 chrX 137178971 137179040 -25420890 - MIR3 SINE MIR -14 194 130 409 229 107 30 chrX 137179574 137179705 -25420225 - MIR3 SINE MIR -33 175 35 605 294 31 10 chrX 137180440 137180634 -25419296 - MIR SINE MIR -45 217 20 845 161 56 6 chrX 137181265 137181445 -25418485 - MER53 DNA DNA 0 189 1 187 114 45 0 chrX 137181646 137181690 -25418240 + (TA)n Simple_repeat Simple_repeat 1 46 0 232 278 44 22 chrX 137181786 137181876 -25418054 + L1MC4a LINE L1 4733 4824 -1322 1142 320 29 20 chrX 137182159 137182749 -25417181 + L1MC4a LINE L1 5264 5858 -1950 216 309 72 66 chrX 137183274 137183455 -25416475 + L2 LINE L2 2874 3055 -217 340 359 152 0 chrX 137183606 137183790 -25416140 + MIR SINE MIR 20 231 -31 374 317 28 0 chrX 137184001 137184143 -25415787 + MIR SINE MIR 61 206 -56 748 342 123 20 chrX 137184541 137184939 -25414991 - L2 LINE L2 0 3272 2834 427 337 30 12 chrX 137185046 137185215 -25414715 - MER5B DNA MER1_type 0 178 7 2192 127 0 0 chrX 137185220 137185527 -25414403 + AluSx SINE Alu 6 312 0 939 122 0 0 chrX 137185959 137186197 -25413733 + (TA)n Simple_repeat Simple_repeat 1 238 0 253 266 138 0 chrX 137186216 137186325 -25413605 + L1MC4 LINE L1 7918 8041 -1 344 116 130 0 chrX 137186331 137186400 -25413530 + L1MB4 LINE L1 6103 6180 0 632 340 98 13 chrX 137186544 137186862 -25413068 + L3 LINE CR1 736 1080 -497 182 271 34 0 chrX 137187240 137187299 -25412631 + L3 LINE CR1 1209 1269 -308 * 339 267 92 42 chrX 137187285 137187405 -25412525 - MIR SINE MIR -89 173 48 210 289 217 0 chrX 137187489 137187572 -25412358 - L2 LINE L2 -16 3297 3197 240 358 127 34 chrX 137187654 137188424 -25411506 - L2 LINE L2 -433 2881 2040 311 241 86 60 chrX 137190990 137191106 -25408824 - MIR SINE MIR -133 129 11 3852 218 30 26 chrX 137191794 137193461 -25406469 - L1MC/D LINE L1 -547 5812 4146 32 0 0 0 chrX 137193499 137193531 -25406399 + AT_rich Low_complexity Low_complexity 1 32 0 4741 141 6 50 chrX 137193536 137194431 -25405499 - L1MA10 LINE L1 -8 6326 5472 767 258 27 10 chrX 137194431 137194703 -25405227 - L1MC/D LINE L1 -3184 2962 2684 383 342 79 18 chrX 137194792 137195020 -25404910 - MIR SINE MIR -14 248 7 290 359 51 13 chrX 137195389 137195545 -25404385 - MER20B DNA MER1_type -620 163 2 190 224 61 0 chrX 137195546 137195595 -25404335 + L2 LINE L2 3261 3312 -1 562 273 75 6 chrX 137195997 137196158 -25403772 + MER5B DNA MER1_type 6 177 -1 575 275 54 16 chrX 137196227 137196458 -25403472 + MIR SINE MIR 17 252 -10 287 164 16 0 chrX 137197748 137197809 -25402121 + (TG)n Simple_repeat Simple_repeat 1 62 0 208 345 0 0 chrX 137197879 137197934 -25401996 + L2 LINE L2 3242 3296 -17 202 318 0 0 chrX 137198927 137198971 -25400959 + MIR SINE MIR 34 77 -131 820 306 65 12 chrX 137198984 137199308 -25400622 + L2 LINE L2 2973 3313 0 236 268 144 10 chrX 137199311 137199408 -25400522 + MIR SINE MIR 82 191 -71 531 362 14 5 chrX 137199522 137199740 -25400190 + MIR SINE MIR 40 259 -3 366 331 62 38 chrX 137200141 137200301 -25399629 - MIR SINE MIR -71 191 28 1934 38 4 0 chrX 137200387 137200623 -25399307 + L1PA5 LINE L1 5913 6149 -5 780 279 27 9 chrX 137200882 137201104 -25398826 - MIR SINE MIR -36 226 1 516 254 99 33 chrX 137201336 137201517 -25398413 - MIR SINE MIR -48 214 22 502 335 31 16 chrX 137202654 137202848 -25397082 - MIR SINE MIR -30 232 36 751 289 64 8 chrX 137203298 137203533 -25396397 - MIR SINE MIR -10 252 5 340 269 19 0 chrX 137204317 137204421 -25395509 + L2 LINE L2 2599 2704 -610 382 351 61 9 chrX 137204855 137205086 -25394844 + L1MC4a LINE L1 2968 3210 -2936 4303 140 20 4 chrX 137205120 137205806 -25394124 - L1PA16 LINE L1 -22 6144 5448 1009 296 62 33 chrX 137205802 137206592 -25393338 + L1MC4a LINE L1 3600 4412 -1734 * 2702 216 70 13 chrX 137206563 137207234 -25392696 + L1ME1 LINE L1 5453 6161 -5 246 196 0 0 chrX 137207335 137207391 -25392539 + L1MC4a LINE L1 4470 4525 -1621 213 121 0 0 chrX 137207391 137207424 -25392506 + (TTTTC)n Simple_repeat Simple_repeat 1 33 0 483 48 0 0 chrX 137207424 137207486 -25392444 + (TC)n Simple_repeat Simple_repeat 2 63 0 697 75 0 0 chrX 137207489 137207583 -25392347 - AluS SINE Alu -219 94 1 1050 297 73 20 chrX 137207583 137208670 -25391260 + L1MC4a LINE L1 4514 5662 -508 434 248 26 0 chrX 137209276 137209389 -25390541 + L1MC4a LINE L1 5766 5881 -1927 197 308 58 58 chrX 137210289 137210409 -25389521 + L2 LINE L2 2588 2707 -607 521 87 0 0 chrX 137210411 137210480 -25389450 - L1MA1 LINE L1 -657 5647 5579 4464 86 14 2 chrX 137210480 137211114 -25388816 + L1MA1 LINE L1 5650 6296 -6 21 36 0 0 chrX 137211114 137211142 -25388788 + AT_rich Low_complexity Low_complexity 1 28 0 335 359 24 11 chrX 137211142 137211379 -25388551 + L2 LINE L2 2701 3017 -255 279 332 63 39 chrX 137212238 137212443 -25387487 - MIR SINE MIR -50 212 3 851 233 0 0 chrX 137313020 137313192 -25286738 - L1P LINE L1 -1816 4330 4159 298 169 56 11 chrX 137313243 137313332 -25286598 - L1 LINE L1 -2812 3334 3242 1161 176 100 34 chrX 137313332 137313684 -25286246 - MLT2B3 LTR ERVL -1 553 186 2044 134 0 0 chrX 137313685 137313983 -25285947 - AluSg SINE Alu -12 298 1 1443 189 84 2 chrX 137314755 137315421 -25284509 + L1MC3 LINE L1 5089 7321 -464 2217 101 7 7 chrX 137315432 137315739 -25284191 - AluY SINE Alu -4 307 1 360 337 239 22 chrX 137315747 137316195 -25283735 + L3 LINE CR1 998 1542 -35 6540 16 0 0 chrX 137316516 137317214 -25282716 + L1PA2 LINE L1 5458 6155 0 918 77 0 0 chrX 137317228 137317345 -25282585 + AluSc SINE Alu 190 306 -3 1700 177 28 3 chrX 137317471 137317759 -25282171 - AluJb SINE Alu -13 299 5 1089 191 99 44 chrX 137317932 137318205 -25281725 + AluJo SINE Alu 7 294 -18 229 336 49 28 chrX 137318712 137318855 -25281075 + L2 LINE L2 3125 3270 -2 731 136 8 83 chrX 137319262 137319394 -25280536 + FLAM_C SINE Alu 2 123 -20 450 0 0 0 chrX 137319395 137319445 -25280485 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 312 313 48 25 chrX 137319839 137319992 -25279938 - MIR SINE MIR -87 121 4 833 125 8 16 chrX 137320373 137320501 -25279429 + FLAM_C SINE Alu 7 133 -10 2059 117 7 14 chrX 137320506 137320797 -25279133 + AluSx SINE Alu 1 289 -23 347 197 61 0 chrX 137321518 137321584 -25278346 + MLT1K LTR MaLR 519 588 0 2176 121 0 3 chrX 137321730 137322037 -25277893 - AluSq SINE Alu -7 306 1 1673 230 106 22 chrX 137322157 137322665 -25277265 + MER74B LTR ERVL 56 606 -16 10491 88 5 9 chrX 137323128 137324574 -25275356 + L1P LINE L1 638 2077 -4069 1144 38 0 0 chrX 137324574 137324707 -25275223 + L1P LINE L1 2 134 -6012 1644 143 0 30 chrX 137324825 137325090 -25274840 - AluSx SINE Alu -55 257 1 2105 251 185 11 chrX 137325355 137326228 -25273702 + L2 LINE L2 2263 3285 -28 950 185 13 13 chrX 137326270 137326466 -25273464 + FRAM SINE Alu 1 166 0 201 121 0 0 chrX 137326757 137326790 -25273140 + (CA)n Simple_repeat Simple_repeat 1 33 0 247 279 0 15 chrX 137327103 137327171 -25272759 + MER5A DNA MER1_type 10 76 -113 1723 166 43 7 chrX 137327171 137327472 -25272458 + AluJb SINE Alu 1 312 0 216 0 0 0 chrX 137327886 137327910 -25272020 + (A)n Simple_repeat Simple_repeat 1 24 0 2266 103 0 6 chrX 137327921 137328232 -25271698 + AluY SINE Alu 1 309 -2 5888 116 38 2 chrX 137328240 137329274 -25270656 + L1PA8 LINE L1 5030 6096 -76 21 0 0 0 chrX 137330604 137330625 -25269305 + AT_rich Low_complexity Low_complexity 1 21 0 11180 62 1 2 chrX 137330746 137332170 -25267760 - L1P LINE L1 -3252 2894 1472 1898 134 0 4 chrX 137333188 137333463 -25266467 - AluSx SINE Alu -3 309 36 726 312 26 26 chrX 137334048 137334317 -25265613 - MER115 DNA AcHobo -391 302 34 184 342 165 13 chrX 137334322 137334480 -25265450 - L2 LINE L2 -378 2936 2755 2526 54 0 3 chrX 137334948 137335246 -25264684 - AluY SINE Alu -14 297 1 1598 178 7 4 chrX 137335314 137335628 -25264302 - AluSq SINE Alu 0 322 8 444 274 62 7 chrX 137335700 137335846 -25264084 - MIR SINE MIR -13 249 96 503 125 0 0 chrX 137335983 137336055 -25263875 - LTR23 LTR ERV1 -230 207 136 581 217 57 0 chrX 137336085 137336191 -25263739 - AluJb SINE Alu -195 117 6 851 174 6 60 chrX 137336222 137336389 -25263541 + FRAM SINE Alu 2 159 -17 1325 210 60 0 chrX 137336398 137336679 -25263251 + AluJb SINE Alu 5 302 -10 8195 143 8 6 chrX 137336679 137337912 -25262018 - L1M1 LINE L1 -5299 2266 1028 4964 156 20 19 chrX 137338053 137338967 -25260963 + L1PB1 LINE L1 5214 6128 -23 805 123 5 69 chrX 137340560 137340763 -25259167 + AluSg/x SINE Alu 121 310 -2 1552 172 45 36 chrX 137340764 137341101 -25258829 - THE1C LTR MaLR -35 340 1 986 144 0 0 chrX 137341149 137341281 -25258649 + AluJ SINE Alu 1 132 -170 1796 169 0 3 chrX 137342041 137342325 -25257605 - AluJb SINE Alu -17 295 13 795 156 39 0 chrX 137342434 137342562 -25257368 + AluJ SINE Alu 1 133 -169 540 196 21 21 chrX 137342564 137342791 -25257139 + GA-rich Low_complexity Low_complexity 1 227 0 806 151 151 0 chrX 137342791 137342937 -25256993 + AluJ SINE Alu 133 300 -12 231 155 35 35 chrX 137343032 137343090 -25256840 - L1MC/D LINE L1 -1902 5906 5849 761 241 84 15 chrX 137343262 137343536 -25256394 + HAL1 LINE L1 1028 1320 -1187 2145 221 82 43 chrX 137343558 137344133 -25255797 + HAL1 LINE L1 1390 1986 -521 8301 45 3 6 chrX 137344516 137345488 -25254442 + LTR5 LTR ERVK 1 969 0 665 259 106 29 chrX 137345633 137345907 -25254023 - L2 LINE L2 0 3313 3019 575 271 90 0 chrX 137346433 137346599 -25253331 + MIR SINE MIR 65 245 -17 253 276 0 0 chrX 137347337 137347395 -25252535 + L2 LINE L2 3027 3084 -188 943 331 46 23 chrX 137347553 137348374 -25251556 - ERVL LTR ERVL -3399 2365 1449 412 329 46 12 chrX 137348526 137348766 -25251164 - ERVL LTR ERVL -3809 1187 940 1718 208 3 14 chrX 137348899 137349270 -25250660 + L1PB4 LINE L1 3315 3681 -2465 4824 40 3 29 chrX 137349270 137349853 -25250077 - L1PA4 LINE L1 -1 6154 5587 426 376 30 6 chrX 137350073 137350238 -25249692 + MIR3 SINE MIR 17 185 -23 1685 176 0 11 chrX 137350238 137350552 -25249378 - AluJb SINE Alu 0 313 3 447 269 62 7 chrX 137350620 137350765 -25249165 - MIR SINE MIR -13 249 97 1998 158 0 0 chrX 137350775 137351073 -25248857 + AluSx SINE Alu 1 298 -14 768 174 8 16 chrX 137351073 137351194 -25248736 - AluJo/FLAM SINE Alu -191 121 2 1407 199 51 0 chrX 137351195 137351487 -25248443 + L1PB4 LINE L1 4583 4889 -1257 5256 147 59 27 chrX 137351647 137351806 -25248124 + L1PB4 LINE L1 4883 5035 -1121 2023 121 0 0 chrX 137351806 137352088 -25247842 + AluSx SINE Alu 29 310 -2 5256 147 59 27 chrX 137352088 137353175 -25246755 + L1PB4 LINE L1 5035 6156 0 272 216 123 111 chrX 137353251 137353413 -25246517 - MLT1H LTR MaLR -275 274 111 568 252 63 43 chrX 137353617 137353871 -25246059 - L1MC5 LINE L1 -744 7217 6959 6177 168 21 18 chrX 137353929 137355246 -25244684 - L1MC1 LINE L1 -14 6319 4992 2366 90 3 0 chrX 137355246 137355546 -25244384 - AluSg SINE Alu -9 301 1 6177 168 21 18 chrX 137355546 137355560 -25244370 - L1MC1 LINE L1 -1341 4992 4980 2090 142 0 0 chrX 137355580 137355875 -25244055 - AluSx SINE Alu -17 295 1 865 131 0 0 chrX 137355879 137356001 -25243929 - AluJb SINE Alu -190 122 1 862 249 38 0 chrX 137356002 137356187 -25243743 - MSTD LTR MaLR -204 192 1 229 200 0 0 chrX 137356191 137356241 -25243689 - L1MC1 LINE L1 -1252 4894 4845 1068 282 58 16 chrX 137356252 137356626 -25243304 - L1MC4 LINE L1 -821 7072 6552 1998 128 42 0 chrX 137356626 137356915 -25243015 + AluSg SINE Alu 1 301 -9 1068 282 58 16 chrX 137356915 137357062 -25242868 - L1MC4 LINE L1 -1341 6552 6413 2375 185 55 18 chrX 137357255 137357764 -25242166 - L1MB2 LINE L1 0 6171 5644 557 266 107 0 chrX 137357889 137358066 -25241864 - MIR SINE MIR -65 197 2 11829 126 29 28 chrX 137358543 137359792 -25240138 + Tigger1 DNA MER2_type 1 1247 -1171 2406 75 0 31 chrX 137359792 137360113 -25239817 - AluY SINE Alu 0 311 1 11829 126 29 28 chrX 137360113 137360619 -25239311 + Tigger1 DNA MER2_type 1247 1762 -656 2469 80 0 0 chrX 137360619 137360919 -25239011 - AluSc SINE Alu -8 301 2 11829 126 29 28 chrX 137360919 137361252 -25238678 + Tigger1 DNA MER2_type 1762 2093 -325 1318 69 12 0 chrX 137361253 137361413 -25238517 + AluSg/x SINE Alu 83 244 -66 631 144 0 0 chrX 137361437 137361541 -25238389 + Tigger1 DNA MER2_type 2078 2181 -237 723 201 0 15 chrX 137361542 137361676 -25238254 + AluJo/FLAM SINE Alu 2 133 -169 296 109 109 0 chrX 137361678 137361719 -25238211 + AluSc SINE Alu 134 180 -119 3427 139 44 23 chrX 137361719 137362331 -25237599 + MER51A LTR ERV1 1 625 -9 706 192 0 0 chrX 137362357 137362477 -25237453 + FRAM SINE Alu 40 159 -17 1445 139 38 0 chrX 137362477 137362714 -25237216 + Tigger1 DNA MER2_type 2172 2417 -1 2345 113 0 0 chrX 137363030 137363330 -25236600 + AluSx SINE Alu 1 300 -12 906 117 0 29 chrX 137363355 137363529 -25236401 - FLAM_C SINE Alu 0 170 1 2290 119 0 0 chrX 137365305 137365617 -25234313 - AluSx SINE Alu 0 312 1 749 186 0 0 chrX 137365867 137365996 -25233934 - FLAM_C SINE Alu 0 133 5 2246 116 0 3 chrX 137366214 137366515 -25233415 - AluSp SINE Alu -11 302 3 1288 106 0 22 chrX 137366789 137366968 -25232962 + AluSx SINE Alu 1 175 -137 1008 150 0 120 chrX 137366972 137367172 -25232758 + AluJb SINE Alu 129 304 -8 1957 162 0 3 chrX 137367327 137367630 -25232300 + AluJb SINE Alu 1 302 -10 30 77 0 0 chrX 137368514 137368579 -25231351 + AT_rich Low_complexity Low_complexity 1 65 0 25 31 0 0 chrX 137368609 137368641 -25231289 + AT_rich Low_complexity Low_complexity 1 32 0 248 326 208 17 chrX 137369154 137369510 -25230420 + L2 LINE L2 1256 1679 -1635 274 330 18 18 chrX 137369573 137369685 -25230245 + L2 LINE L2 1699 1810 -1504 375 292 94 50 chrX 137369729 137369783 -25230147 - L1MEc LINE L1 -3938 2783 2733 2006 146 27 0 chrX 137369783 137369957 -25229973 - AluSx SINE Alu -8 304 117 216 0 0 0 chrX 137369957 137369981 -25229949 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2006 146 27 0 chrX 137369981 137370100 -25229830 - AluSx SINE Alu -195 117 3 375 292 94 50 chrX 137370100 137370343 -25229587 - L1MEc LINE L1 -3988 2733 2473 276 312 71 39 chrX 137370346 137370500 -25229430 + L2 LINE L2 1988 2146 -1168 2045 142 13 13 chrX 137370548 137370851 -25229079 - AluSx SINE Alu -9 303 1 2296 66 11 7 chrX 137371102 137371420 -25228510 - AluY SINE Alu 0 311 1 229 322 55 16 chrX 137371499 137371682 -25228248 - L1M2 LINE L1 -4314 2535 2346 313 331 44 29 chrX 137371774 137371910 -25228020 - L1MEc LINE L1 -4863 1667 1530 338 222 14 0 chrX 137371911 137371983 -25227947 - Tigger5 DNA MER2_type 0 2323 2251 1409 210 83 0 chrX 137372050 137372210 -25227720 - AluJo SINE Alu -9 303 158 210 37 0 0 chrX 137372210 137372237 -25227693 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1409 210 83 0 chrX 137372237 137372352 -25227578 - AluJo SINE Alu -154 158 5 656 132 21 83 chrX 137372371 137372515 -25227415 - AluSp SINE Alu -178 135 1 2320 76 3 16 chrX 137372669 137373001 -25226929 - AluY SINE Alu 0 311 1 21 57 0 0 chrX 137373881 137373916 -25226014 + AT_rich Low_complexity Low_complexity 1 35 0 2523 84 0 0 chrX 137374131 137374441 -25225489 + AluY SINE Alu 1 310 -1 2372 66 7 7 chrX 137374661 137374965 -25224965 + AluY SINE Alu 1 304 -7 565 220 96 19 chrX 137375272 137375481 -25224449 - AluJo SINE Alu -6 306 82 788 168 0 36 chrX 137375743 137375880 -25224050 - AluJo SINE Alu -61 251 120 256 279 35 93 chrX 137375943 137376201 -25223729 - L1MEc LINE L1 -5265 1265 1023 878 162 27 54 chrX 137376231 137376416 -25223514 + Tigger2a DNA MER2_type 1 180 -254 248 392 21 0 chrX 137376450 137376593 -25223337 - L1MEc LINE L1 -5530 1000 855 27 0 0 0 chrX 137376813 137376840 -25223090 + AT_rich Low_complexity Low_complexity 1 27 0 1026 127 55 11 chrX 137376846 137377027 -25222903 - Tigger2a DNA MER2_type -1 443 255 278 376 0 0 chrX 137377566 137377707 -25222223 + (CCA)n Simple_repeat Simple_repeat 1 141 0 377 53 0 0 chrX 137378390 137378447 -25221483 - Tigger2a DNA MER2_type -179 265 209 5275 151 28 9 chrX 137378454 137379671 -25220259 + L1PA16 LINE L1 4938 6166 0 2296 110 3 0 chrX 137379675 137379974 -25219956 + AluSx SINE Alu 2 301 -11 1036 115 75 71 chrX 137380003 137380229 -25219701 - Tigger2a DNA MER2_type -207 227 1 332 304 82 7 chrX 137380364 137380499 -25219431 + L2 LINE L2 1838 1982 -1332 189 171 0 0 chrX 137380705 137380740 -25219190 + CT-rich Low_complexity Low_complexity 5 39 0 1276 170 43 58 chrX 137380773 137381050 -25218880 - AluJo SINE Alu -39 273 1 1131 242 85 3 chrX 137381087 137381380 -25218550 - L1MEc LINE L1 -6205 335 19 2178 106 0 13 chrX 137381397 137381700 -25218230 + AluY SINE Alu 1 299 -12 963 195 0 0 chrX 137381700 137381864 -25218066 + AluSg/x SINE Alu 134 297 -15 271 127 73 0 chrX 137381871 137381926 -25218004 - L1M4 LINE L1 -841 5305 5247 2481 184 24 18 chrX 137381936 137382436 -25217494 - LTR53 LTR ERVL 0 519 17 274 244 92 7 chrX 137382442 137382588 -25217342 - L1M4 LINE L1 -2027 4119 3951 187 152 43 0 chrX 137382590 137382636 -25217294 + CT-rich Low_complexity Low_complexity 4 51 0 1574 209 199 16 chrX 137382637 137382805 -25217125 - L1M4 LINE L1 -2200 3946 3810 936 139 148 56 chrX 137382805 137383021 -25216909 + MER46A DNA MER2_type 1 236 0 1574 209 199 16 chrX 137383021 137383611 -25216319 - L1M4 LINE L1 -2336 3810 3049 241 349 71 0 chrX 137383744 137383870 -25216060 + L2 LINE L2 2431 2565 -749 800 185 7 0 chrX 137383918 137384053 -25215877 - AluJo SINE Alu -176 136 1 243 159 23 0 chrX 137384202 137384246 -25215684 + MER72 LTR ERV1 585 629 -93 273 317 29 10 chrX 137384265 137384369 -25215561 + L2 LINE L2 2743 2848 -466 1931 104 90 0 chrX 137384369 137384637 -25215293 + AluSg SINE Alu 1 292 -18 1361 165 27 108 chrX 137384895 137385228 -25214702 + AluYb8 SINE Alu 1 306 -12 219 150 0 0 chrX 137385301 137385341 -25214589 + (T)n Simple_repeat Simple_repeat 1 40 0 290 377 34 0 chrX 137385343 137385489 -25214441 + L2 LINE L2 2809 2959 -313 1173 182 5 0 chrX 137385497 137385706 -25214224 - MLT1A1 LTR MaLR 0 365 156 1369 270 82 30 chrX 137385732 137385808 -25214122 - L2 LINE L2 -90 3223 3152 1759 150 48 17 chrX 137385808 137386101 -25213829 + AluJo SINE Alu 1 302 -10 1369 270 82 30 chrX 137386101 137386723 -25213207 - L2 LINE L2 -161 3152 2481 1992 115 50 4 chrX 137386723 137387001 -25212929 - AluSc SINE Alu -18 291 1 326 337 45 11 chrX 137387036 137387125 -25212805 + L2 LINE L2 3153 3244 -28 982 200 22 9 chrX 137387172 137387402 -25212528 - L1MA6 LINE L1 -1 6299 6067 2445 70 0 0 chrX 137387505 137387804 -25212126 + AluSx SINE Alu 1 299 -13 1892 166 3 25 chrX 137387821 137388140 -25211790 - AluJb SINE Alu 0 312 1 642 246 161 20 chrX 137388307 137388506 -25211424 - MIR SINE MIR 0 262 36 199 345 88 38 chrX 137388598 137388937 -25210993 + L2 LINE L2 714 1069 -2245 * 527 316 124 16 chrX 137388897 137389090 -25210840 - MIR SINE MIR 0 262 49 23 0 0 0 chrX 137389359 137389382 -25210548 + AT_rich Low_complexity Low_complexity 1 23 0 959 176 0 7 chrX 137389382 137389535 -25210395 - AluJo/FRAM SINE Alu -31 281 130 2032 169 0 6 chrX 137389537 137389851 -25210079 - AluJb SINE Alu 0 312 1 2472 58 0 13 chrX 137389988 137390296 -25209634 + AluY SINE Alu 1 304 -7 540 346 80 15 chrX 137390586 137391046 -25208884 + L2 LINE L2 2121 2610 -704 2331 88 3 0 chrX 137391431 137391726 -25208204 - AluSp SINE Alu -17 296 1 2069 222 68 95 chrX 137391881 137392684 -25207246 - MER21B LTR ERV1 -58 805 24 1029 107 14 0 chrX 137392802 137392942 -25206988 + AluSg/x SINE Alu 168 309 0 267 313 83 10 chrX 137393275 137393371 -25206559 + L2 LINE L2 3170 3272 0 28 29 0 0 chrX 137393451 137393486 -25206444 + AT_rich Low_complexity Low_complexity 1 35 0 1591 128 0 0 chrX 137393855 137394073 -25205857 - AluSg/x SINE Alu -30 282 65 723 104 0 0 chrX 137394073 137394169 -25205761 - AluS SINE Alu -217 96 1 2346 103 0 0 chrX 137394922 137395223 -25204707 + AluSx SINE Alu 1 301 -11 1034 153 12 0 chrX 137395223 137395393 -25204537 + AluSg/x SINE Alu 132 303 -7 1409 168 67 18 chrX 137396114 137396399 -25203531 + AluJo SINE Alu 1 299 -3 890 107 0 80 chrX 137397531 137397681 -25202249 - AluSq/x SINE Alu -174 138 1 227 363 62 28 chrX 137399077 137399256 -25200674 + L2 LINE L2 2842 3026 -246 22 0 0 0 chrX 137399567 137399589 -25200341 + AT_rich Low_complexity Low_complexity 1 22 0 546 350 184 15 chrX 137399848 137400586 -25199344 - L2 LINE L2 -343 2971 2109 1264 124 0 0 chrX 137400924 137401093 -25198837 - AluSg/x SINE Alu -3 307 139 1877 112 3 18 chrX 137401095 137401437 -25198493 + AluSx SINE Alu 1 338 0 330 254 0 0 chrX 137401437 137401508 -25198422 + MER112 DNA MER1_type 188 258 -2 38 0 0 0 chrX 137402633 137402671 -25197259 + AT_rich Low_complexity Low_complexity 1 38 0 24 67 0 0 chrX 137403189 137403234 -25196696 + AT_rich Low_complexity Low_complexity 1 45 0 772 287 93 14 chrX 137403440 137403904 -25196026 - MLT1G1 LTR MaLR 0 595 86 383 366 67 54 chrX 137404088 137404536 -25195394 + L2 LINE L2 2242 2695 -619 1383 194 58 24 chrX 137404537 137404830 -25195100 - AluJo SINE Alu -9 303 1 186 219 0 0 chrX 137405337 137405401 -25194529 + (TA)n Simple_repeat Simple_repeat 1 64 0 2339 79 3 0 chrX 137405679 137405970 -25193960 - AluSp SINE Alu -21 292 1 211 300 25 12 chrX 137406069 137406149 -25193781 - L2 LINE L2 -313 2959 2879 285 197 0 0 chrX 137406198 137406259 -25193671 + CT-rich Low_complexity Low_complexity 2 62 0 370 291 165 0 chrX 137409229 137409356 -25190574 - L2 LINE L2 -422 2892 2745 21 57 0 0 chrX 137409767 137409802 -25190128 + AT_rich Low_complexity Low_complexity 1 35 0 1948 146 3 3 chrX 137410085 137410379 -25189551 + AluJo SINE Alu 14 307 -5 2462 49 3 13 chrX 137411692 137411996 -25187934 - AluY SINE Alu -10 301 1 764 184 0 0 chrX 137413666 137413791 -25186139 + FLAM_C SINE Alu 2 126 -7 2486 96 0 0 chrX 137416422 137416734 -25183196 - AluSx SINE Alu 0 312 1 191 372 138 0 chrX 137416762 137416856 -25183074 - L3 LINE CR1 -12 1565 1459 725 260 78 0 chrX 137416893 137417085 -25182845 - L3 LINE CR1 -206 1371 1165 1810 174 37 0 chrX 137418120 137418419 -25181511 + AluJb SINE Alu 1 310 -2 746 177 0 8 chrX 137418674 137418798 -25181132 - FLAM_C SINE Alu -16 127 5 32 67 0 0 chrX 137419059 137419119 -25180811 + AT_rich Low_complexity Low_complexity 1 60 0 495 288 116 5 chrX 137419232 137419430 -25180500 - MIR SINE MIR -18 244 25 21 0 0 0 chrX 137419709 137419730 -25180200 + AT_rich Low_complexity Low_complexity 1 21 0 2137 110 3 13 chrX 137419887 137420188 -25179742 + AluSx SINE Alu 1 298 -14 480 278 78 64 chrX 137421266 137421547 -25178383 - L2 LINE L2 0 3313 3029 200 109 0 65 chrX 137423005 137423051 -25176879 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 439 283 27 58 chrX 137423059 137423317 -25176613 + MARNA DNA Mariner 270 519 -67 23 0 0 53 chrX 137423670 137423691 -25176239 + AT_rich Low_complexity Low_complexity 1 21 -15 1618 174 32 3 chrX 137423691 137423973 -25175957 + AluJb SINE Alu 1 290 -22 23 0 0 53 chrX 137423973 137423989 -25175941 + AT_rich Low_complexity Low_complexity 21 36 0 198 0 0 0 chrX 137424535 137424557 -25175373 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2856 175 98 47 chrX 137424791 137425973 -25173957 - L1MB2 LINE L1 -72 6099 4837 2128 152 36 11 chrX 137425973 137426329 -25173601 - MLT1A1 LTR MaLR 0 365 1 2856 175 98 47 chrX 137426329 137426486 -25173444 - L1MB2 LINE L1 -1334 4837 4689 2309 100 3 0 chrX 137426529 137426820 -25173110 + AluSx SINE Alu 1 292 -20 1000 196 49 36 chrX 137427067 137427291 -25172639 + MLT1F1 LTR MaLR 319 545 -22 317 231 22 11 chrX 137427332 137427423 -25172507 - Charlie1 DNA MER1_type -31 2730 2639 213 288 15 0 chrX 137428630 137428696 -25171234 + MER5A DNA MER1_type 123 189 0 339 164 33 0 chrX 137428874 137428935 -25170995 - MER5A DNA MER1_type -2 187 125 1038 148 0 13 chrX 137428935 137429090 -25170840 + AluSq SINE Alu 1 153 -160 763 118 22 30 chrX 137429155 137429290 -25170640 - MER5A DNA MER1_type -55 134 1 360 259 102 20 chrX 137429597 137429744 -25170186 + MIR3 SINE MIR 11 169 -39 2175 119 11 3 chrX 137430683 137431045 -25168885 + L1PA16 LINE L1 5428 5792 -364 297 269 34 34 chrX 137431102 137431277 -25168653 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 * 349 181 0 122 chrX 137431221 137431426 -25168504 + (TA)n Simple_repeat Simple_repeat 1 180 0 349 181 0 122 chrX 137431445 137431650 -25168280 + (TA)n Simple_repeat Simple_repeat 1 180 0 1494 196 25 48 chrX 137431674 137431692 -25168238 + L1PA16 LINE L1 5776 5793 -373 324 0 0 0 chrX 137431692 137431728 -25168202 + (CA)n Simple_repeat Simple_repeat 2 37 0 1494 196 25 48 chrX 137431728 137431765 -25168165 + L1PA16 LINE L1 5793 5829 -337 2168 108 7 10 chrX 137431765 137432060 -25167870 + AluSq SINE Alu 1 294 -19 1494 196 25 48 chrX 137432060 137432396 -25167534 + L1PA16 LINE L1 5829 6159 -7 213 277 0 0 chrX 137432855 137432902 -25167028 + CT-rich Low_complexity Low_complexity 1 47 0 338 288 31 16 chrX 137433633 137433767 -25166163 - MER5B DNA MER1_type -11 178 40 340 361 74 7 chrX 137434109 137434378 -25165552 + L2 LINE L2 2563 2849 -465 522 261 188 24 chrX 137435904 137436111 -25163819 + MIR SINE MIR 12 252 -10 201 216 0 0 chrX 137436374 137436411 -25163519 + L2 LINE L2 3235 3271 -1 329 346 42 25 chrX 137436485 137436725 -25163205 + L2 LINE L2 2869 3112 -160 195 342 38 13 chrX 137436755 137436834 -25163096 + L2 LINE L2 3188 3268 -4 690 256 27 54 chrX 137438499 137438722 -25161208 - MIR SINE MIR -12 250 34 1141 200 143 62 chrX 137438845 137439033 -25160897 + MLT1D LTR MaLR 12 183 -322 2143 127 3 3 chrX 137439033 137439333 -25160597 + AluSx SINE Alu 3 302 -10 1141 200 143 62 chrX 137439333 137439599 -25160331 + MLT1D LTR MaLR 183 503 -2 599 214 8 8 chrX 137441129 137441246 -25158684 - L2 LINE L2 -5 3308 3192 551 72 0 36 chrX 137441246 137441329 -25158601 - MADE1 DNA Mariner 0 80 1 1678 188 29 9 chrX 137441793 137442134 -25157796 - MER7A DNA MER2_type 0 346 1 313 382 0 8 chrX 137442134 137442257 -25157673 - MIR SINE MIR -108 154 33 183 369 60 12 chrX 137442802 137442886 -25157044 - L2 LINE L2 -51 3221 3134 1894 130 0 4 chrX 137443280 137443575 -25156355 + AluSx SINE Alu 22 315 0 888 202 56 0 chrX 137443701 137443879 -25156051 - MER58A DNA MER1_type 0 224 37 198 0 0 0 chrX 137443918 137443940 -25155990 + (T)n Simple_repeat Simple_repeat 1 22 0 251 53 0 26 chrX 137444149 137444187 -25155743 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 3078 69 64 9 chrX 137444209 137444590 -25155340 + MLT2A1 LTR ERVL 1 409 -35 432 0 0 0 chrX 137444590 137444638 -25155292 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 3078 69 64 9 chrX 137444638 137444677 -25155253 + MLT2A1 LTR ERVL 409 444 0 28497 162 13 18 chrX 137444678 137446521 -25153409 + ERVL-A1 LTR ERVL 2 1852 -3912 414 167 0 0 chrX 137446521 137446587 -25153343 - AluS SINE Alu -23 286 221 28497 162 13 18 chrX 137446587 137449721 -25150209 + ERVL-A1 LTR ERVL 1852 5020 -744 1024 154 0 46 chrX 137449721 137449896 -25150034 - AluSq SINE Alu -146 167 1 207 306 0 0 chrX 137450051 137450100 -25149830 + L2 LINE L2 3008 3056 -216 540 296 66 55 chrX 137450102 137450481 -25149449 + L2 LINE L2 2229 2611 -703 410 281 123 17 chrX 137450724 137450959 -25148971 + MLT1H LTR MaLR 1 260 -289 860 123 0 0 chrX 137454782 137454904 -25145026 + FLAM_C SINE Alu 3 124 -9 867 218 6 6 chrX 137455371 137455550 -25144380 - FRAM SINE Alu -4 172 1 310 281 71 43 chrX 137455979 137456157 -25143773 + MIR SINE MIR 17 197 -65 593 205 41 72 chrX 137457325 137457456 -25142474 + MER5A DNA MER1_type 1 126 -63 2199 111 7 0 chrX 137457456 137457745 -25142185 - AluSx SINE Alu -21 291 1 593 205 41 72 chrX 137457745 137457808 -25142122 + MER5A DNA MER1_type 126 189 0 1833 164 30 0 chrX 137458736 137459034 -25140896 + AluJb SINE Alu 1 307 -5 22 0 0 0 chrX 137459386 137459408 -25140522 + AT_rich Low_complexity Low_complexity 1 22 0 * 613 153 41 20 chrX 137459401 137459499 -25140431 - FLAM_A SINE Alu -22 120 21 21 36 0 0 chrX 137459508 137459536 -25140394 + AT_rich Low_complexity Low_complexity 1 28 0 2465 66 0 3 chrX 137459545 137459846 -25140084 + AluY SINE Alu 1 300 -11 22 56 0 0 chrX 137459969 137460005 -25139925 + AT_rich Low_complexity Low_complexity 1 36 0 2155 117 3 0 chrX 137460325 137460615 -25139315 - AluSq SINE Alu -22 291 1 572 314 51 64 chrX 137461379 137461851 -25138079 + MLT1K LTR MaLR 121 586 -2 2644 113 8 4 chrX 137461960 137462336 -25137594 - THE1C LTR MaLR 0 426 1 1997 231 84 23 chrX 137462449 137462961 -25136969 - MLT1E LTR MaLR 0 593 51 351 275 120 0 chrX 137464825 137464967 -25134963 - L1ME4a LINE L1 -209 5912 5754 428 240 144 34 chrX 137465059 137465205 -25134725 + MLT1K LTR MaLR 108 269 -319 1709 112 58 14 chrX 137465324 137465602 -25134328 + THE1C LTR MaLR 1 290 -85 1171 86 0 0 chrX 137465602 137465754 -25134176 + THE1-int LTR MaLR 460 611 -969 291 263 88 35 chrX 137465827 137465941 -25133989 + MLT1K LTR MaLR 467 586 -2 248 310 35 0 chrX 137465956 137466043 -25133887 + L3 LINE CR1 1187 1276 -301 1059 199 78 4 chrX 137466044 137466300 -25133630 + L1MA4 LINE L1 6024 6298 -2 278 302 101 20 chrX 137466320 137466469 -25133461 + L3 LINE CR1 1271 1431 -146 307 196 36 71 chrX 137466735 137466847 -25133083 + L1M4 LINE L1 3798 3905 -2241 410 283 73 53 chrX 137466858 137467394 -25132536 - L1MDb LINE L1 -4969 1573 1016 447 317 200 5 chrX 137468137 137468342 -25131588 - MIR SINE MIR -13 249 5 498 317 27 11 chrX 137469157 137469340 -25130590 - MIR3 SINE MIR -4 204 19 2006 133 14 7 chrX 137470266 137470559 -25129371 + AluSx SINE Alu 1 295 -17 704 278 48 5 chrX 137470641 137470828 -25129102 + MER63A DNA MER1_type 16 210 0 471 279 50 34 chrX 137471370 137471633 -25128297 + L1ME4a LINE L1 5678 5947 -208 180 179 0 0 chrX 137472501 137472540 -25127390 + (TAA)n Simple_repeat Simple_repeat 2 40 0 193 407 56 6 chrX 137472599 137472761 -25127169 + MIR SINE MIR 20 189 -73 191 283 19 0 chrX 137472768 137472821 -25127109 - L2 LINE L2 -5 3267 3214 15737 28 0 3 chrX 137473073 137475305 -25124625 + L1P2 LINE L1 3563 5787 -368 34677 46 8 2 chrX 137475310 137479582 -25120348 + L1P LINE L1 9 4305 -1841 825 146 8 0 chrX 137479737 137479860 -25120070 - FLAM_C SINE Alu -19 124 1 2320 103 3 3 chrX 137480086 137480397 -25119533 - AluSx SINE Alu -1 311 1 2495 61 0 19 chrX 137480849 137481159 -25118771 + AluY SINE Alu 1 304 -7 4166 61 10 0 chrX 137481232 137481743 -25118187 - L1PA7 LINE L1 -20 6134 5619 364 296 189 0 chrX 137481769 137481938 -25117992 - MIR SINE MIR -35 227 27 518 248 66 0 chrX 137482312 137482433 -25117497 - MER94 DNA DNA -5 129 1 190 368 58 26 chrX 137482780 137482935 -25116995 - L2 LINE L2 -962 2352 2193 210 292 0 15 chrX 137483627 137483692 -25116238 + CT-rich Low_complexity Low_complexity 3 66 0 21 0 0 0 chrX 137484207 137484228 -25115702 + AT_rich Low_complexity Low_complexity 1 21 0 1323 198 143 62 chrX 137485744 137486010 -25113920 - MLT1D LTR MaLR -2 503 260 2131 127 3 3 chrX 137486010 137486310 -25113620 - AluSx SINE Alu -10 302 3 1323 198 143 62 chrX 137486310 137486498 -25113432 - MLT1D LTR MaLR -245 260 12 679 256 27 54 chrX 137486621 137486844 -25113086 + MIR SINE MIR 34 250 -12 5598 26 0 0 chrX 137487004 137487615 -25112315 + L1PA3 LINE L1 5545 6155 0 3397 39 0 0 chrX 137487615 137487996 -25111934 + L1PA4 LINE L1 5770 6152 -3 341 257 62 18 chrX 137488238 137488351 -25111579 - MIR SINE MIR -97 165 48 414 0 0 0 chrX 137489315 137489361 -25110569 + (TG)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chrX 137489662 137489691 -25110239 + AT_rich Low_complexity Low_complexity 1 29 0 1384 257 68 41 chrX 137490316 137490872 -25109058 - MLT1F1 LTR MaLR 0 567 1 320 309 6 0 chrX 137491424 137491521 -25108409 + MIR SINE MIR 72 172 -36 259 241 81 23 chrX 137492171 137492258 -25107672 + MIR SINE MIR 164 255 -7 243 297 34 40 chrX 137492523 137492671 -25107259 - MER103 DNA DNA -2 164 18 249 366 23 23 chrX 137492689 137492820 -25107110 + L2 LINE L2 2667 2797 -517 374 36 36 0 chrX 137492947 137493002 -25106928 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 1110 122 28 6 chrX 137493012 137493192 -25106738 - AluSg/x SINE Alu -22 287 104 310 246 53 53 chrX 137493800 137493914 -25106016 + MIR SINE MIR 148 261 -1 2839 7 0 7 chrX 137494014 137494323 -25105607 - AluYb8 SINE Alu -11 307 1 331 104 35 35 chrX 137494456 137494571 -25105359 + (TA)n Simple_repeat Simple_repeat 2 116 0 22 88 0 0 chrX 137494595 137494652 -25105278 + AT_rich Low_complexity Low_complexity 1 57 0 245 404 43 0 chrX 137495156 137495344 -25104586 + L2 LINE L2 2563 2758 -556 21 0 0 0 chrX 137495595 137495616 -25104314 + AT_rich Low_complexity Low_complexity 1 21 0 2615 110 0 0 chrX 137495618 137495954 -25103976 + L1PA15 LINE L1 5820 6155 -10 849 178 7 13 chrX 137495973 137496125 -25103805 - L1PB4 LINE L1 -13 6143 5993 2037 150 3 3 chrX 137496322 137496629 -25103301 - AluSx SINE Alu -5 307 1 1160 144 0 0 chrX 137496793 137496967 -25102963 - AluSg/x SINE Alu -3 309 136 332 75 0 19 chrX 137497491 137497544 -25102386 + (TA)n Simple_repeat Simple_repeat 2 53 0 27 29 0 0 chrX 137498726 137498760 -25101170 + AT_rich Low_complexity Low_complexity 1 34 0 1984 139 10 3 chrX 137498760 137499054 -25100876 - AluSx SINE Alu -16 296 1 25 51 0 0 chrX 137499210 137499249 -25100681 + AT_rich Low_complexity Low_complexity 1 39 0 2368 98 0 22 chrX 137499383 137499700 -25100230 - AluSg SINE Alu 0 310 1 282 146 14 97 chrX 137500196 137500340 -25099590 + (TTTA)n Simple_repeat Simple_repeat 3 134 0 2289 98 0 20 chrX 137500651 137500956 -25098974 - AluSx SINE Alu -13 299 1 771 249 93 19 chrX 137501802 137502007 -25097923 - MLT1J LTR MaLR -291 220 1 753 238 217 10 chrX 137502598 137502897 -25097033 - MLT1B LTR MaLR -16 374 14 1013 57 19 19 chrX 137503248 137503407 -25096523 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 237 65 0 0 chrX 137503711 137503742 -25096188 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2569 59 0 0 chrX 137504406 137504726 -25095204 + L1PA3 LINE L1 4357 4676 -1470 7974 38 0 0 chrX 137504727 137505802 -25094128 + L1PA3 LINE L1 5081 6155 0 3397 39 0 0 chrX 137505802 137506183 -25093747 + L1PA4 LINE L1 5770 6152 -3 341 257 62 18 chrX 137506425 137506538 -25093392 - MIR SINE MIR -97 165 48 202 189 0 0 chrX 137506977 137507014 -25092916 + C-rich Low_complexity Low_complexity 1 37 0 198 209 12 35 chrX 137507021 137507107 -25092823 + CT-rich Low_complexity Low_complexity 3 86 0 997 198 24 68 chrX 137507321 137507573 -25092357 + ERVL LTR ERVL 4673 4913 -851 1476 231 77 23 chrX 137507589 137507978 -25091952 - MER21B LTR ERV1 -51 812 403 2380 181 44 7 chrX 137507991 137508421 -25091509 - LTR3b LTR ERVK -49 451 6 1896 111 0 0 chrX 137508577 137508829 -25091101 + AluY SINE Alu 52 303 -8 23 78 0 0 chrX 137508901 137508952 -25090978 + AT_rich Low_complexity Low_complexity 1 51 0 214 216 45 11 chrX 137508964 137509052 -25090878 + (TA)n Simple_repeat Simple_repeat 2 92 0 481 308 26 6 chrX 137509122 137509278 -25090652 - MIR SINE MIR -65 197 39 672 165 23 40 chrX 137509377 137509548 -25090382 - THE1C LTR MaLR -1 374 197 387 286 34 20 chrX 137709687 137709834 -24890096 + MIR3 SINE MIR 9 157 -51 251 311 29 29 chrX 137710153 137710256 -24889674 + MIR SINE MIR 20 122 -86 1318 178 8 8 chrX 137710323 137710559 -24889371 + MER46A DNA MER2_type 1 236 0 333 122 0 0 chrX 137710571 137710620 -24889310 - MLT2B1 LTR ERVL 0 520 472 279 242 0 0 chrX 137710620 137710719 -24889211 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 1748 140 32 36 chrX 137710766 137711074 -24888856 + AluJb SINE Alu 1 307 -5 1083 69 0 0 chrX 137711308 137711439 -24888491 - AluSg1 SINE Alu -178 131 1 2248 100 7 0 chrX 137711445 137711735 -24888195 - AluSx SINE Alu -20 292 1 656 106 0 10 chrX 137711846 137711950 -24887980 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 1938 129 3 29 chrX 137711958 137712268 -24887662 - AluSx SINE Alu -10 302 1 839 112 6 123 chrX 137712300 137712383 -24887547 + L1 LINE L1 5071 5162 -984 1966 146 0 0 chrX 137712383 137712706 -24887224 + AluJb SINE Alu 1 323 0 1816 135 15 0 chrX 137712715 137712982 -24886948 + AluSq SINE Alu 11 281 -32 195 42 0 0 chrX 137712982 137713006 -24886924 + (GA)n Simple_repeat Simple_repeat 1 24 0 839 112 6 123 chrX 137713006 137713089 -24886841 + L1 LINE L1 5168 5228 -918 559 254 113 5 chrX 137713234 137713447 -24886483 - MIR SINE MIR -8 254 19 952 166 6 0 chrX 137713548 137713705 -24886225 - AluSg/x SINE Alu -29 283 126 1705 157 18 14 chrX 137713706 137713878 -24886052 - AluJo SINE Alu -21 291 116 297 0 0 0 chrX 137713878 137713911 -24886019 + (TG)n Simple_repeat Simple_repeat 2 34 0 1705 157 18 14 chrX 137713911 137714024 -24885906 - AluJo SINE Alu -196 116 5 387 0 0 0 chrX 137714040 137714083 -24885847 + (TG)n Simple_repeat Simple_repeat 2 44 0 418 282 147 0 chrX 137714180 137714350 -24885580 + MIR SINE MIR 3 197 -65 1710 162 21 14 chrX 137714446 137714736 -24885194 - AluJb SINE Alu -20 292 1 1211 248 110 28 chrX 137714777 137715213 -24884717 + L2 LINE L2 2842 3313 0 385 300 15 15 chrX 137715351 137715481 -24884449 - L2 LINE L2 -224 3048 2919 286 206 24 24 chrX 137715512 137715638 -24884292 + GA-rich Low_complexity Low_complexity 4 129 0 572 212 17 11 chrX 137715659 137715838 -24884092 + GA-rich Low_complexity Low_complexity 1 180 0 232 278 22 22 chrX 137716144 137716234 -24883696 - L2 LINE L2 -503 2811 2722 1952 132 0 55 chrX 137716289 137716600 -24883330 - AluSx SINE Alu -18 294 1 343 246 198 16 chrX 137716755 137716881 -24883049 + MER5A DNA MER1_type 41 189 0 1462 119 22 48 chrX 137717090 137717359 -24882571 + L1MB7 LINE L1 5914 6175 -9 1732 166 7 14 chrX 137719460 137719744 -24880186 - AluJo SINE Alu -30 282 1 2109 125 13 3 chrX 137720356 137720659 -24879271 + AluSx SINE Alu 5 310 -2 2172 93 4 7 chrX 137721038 137721317 -24878613 + AluSc SINE Alu 8 285 -24 916 172 6 35 chrX 137721335 137721504 -24878426 + AluJb SINE Alu 135 298 -14 256 272 66 59 chrX 137721517 137721653 -24878277 - L2 LINE L2 -230 3083 2947 328 315 55 0 chrX 137721671 137721798 -24878132 - L2 LINE L2 -1 3271 3138 308 304 119 13 chrX 137721834 137722061 -24877869 - L3 LINE CR1 -208 1369 1119 357 281 140 26 chrX 137722146 137722374 -24877556 - L2 LINE L2 -95 3218 2965 342 244 107 15 chrX 137722469 137722600 -24877330 + MIR3 SINE MIR 5 147 -61 219 208 75 0 chrX 137722603 137722656 -24877274 - L2 LINE L2 -20 3252 3196 1828 79 4 0 chrX 137723033 137723261 -24876669 - AluSx SINE Alu -81 231 3 1581 174 63 102 chrX 137724125 137724394 -24875536 + MLT1D LTR MaLR 1 244 -261 2326 105 3 0 chrX 137724394 137724700 -24875230 - AluSx SINE Alu -3 309 3 1581 174 63 102 chrX 137724700 137724906 -24875024 + MLT1D LTR MaLR 244 457 -48 3032 98 4 24 chrX 137724906 137725357 -24874573 - MER1A DNA MER1_type 0 529 1 291 137 0 20 chrX 137725357 137725406 -24874524 + MLT1D LTR MaLR 450 497 -8 283 279 128 75 chrX 137725560 137725899 -24874031 - L2 LINE L2 -219 3053 2684 2258 84 0 17 chrX 137725900 137726187 -24873743 + AluSx SINE Alu 1 282 -30 728 244 29 36 chrX 137726239 137726546 -24873384 - L2 LINE L2 -614 2700 2396 965 155 0 0 chrX 137726548 137726690 -24873240 + FRAM SINE Alu 4 145 -31 257 0 0 29 chrX 137726690 137726724 -24873206 + (TAA)n Simple_repeat Simple_repeat 1 33 0 609 269 50 25 chrX 137726963 137727245 -24872685 - L2 LINE L2 -1227 2087 1799 2197 103 17 10 chrX 137727640 137727942 -24871988 + AluSq SINE Alu 1 304 -9 391 264 25 0 chrX 137727945 137728066 -24871864 + L1M4 LINE L1 4487 4610 -1536 296 318 15 45 chrX 137729768 137729900 -24870030 + L2 LINE L2 2896 3023 -249 2236 115 86 9 chrX 137730206 137730544 -24869386 + THE1B LTR MaLR 1 364 0 252 0 0 0 chrX 137730663 137730691 -24869239 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 2138 107 4 4 chrX 137730691 137730972 -24868958 - AluSq SINE Alu -32 281 1 257 287 110 7 chrX 137731378 137731514 -24868416 - L2 LINE L2 -55 3258 3109 2750 3 7 10 chrX 137731514 137731817 -24868113 + AluYa5 SINE Alu 1 302 -9 22 0 0 0 chrX 137731985 137732007 -24867923 + AT_rich Low_complexity Low_complexity 1 22 0 2050 105 0 46 chrX 137733094 137733400 -24866530 + AluSx SINE Alu 1 292 -20 371 246 114 9 chrX 137733478 137733592 -24866338 + MIR SINE MIR 66 191 -71 411 240 31 0 chrX 137733655 137733751 -24866179 - L2 LINE L2 0 3313 3215 609 122 0 11 chrX 137733784 137733874 -24866056 + FLAM_C SINE Alu 30 118 -25 27 0 0 0 chrX 137733888 137733915 -24866015 + AT_rich Low_complexity Low_complexity 1 27 0 2816 215 124 53 chrX 137733915 137734239 -24865691 - L2 LINE L2 -118 3195 2896 180 0 0 0 chrX 137734239 137734259 -24865671 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2816 215 124 53 chrX 137734259 137734482 -24865448 - L2 LINE L2 -417 2896 2690 1701 70 0 5 chrX 137734482 137734697 -24865233 + AluYa5 SINE Alu 98 311 0 2816 215 124 53 chrX 137734697 137735153 -24864777 - L2 LINE L2 -623 2690 2082 1117 184 36 5 chrX 137735153 137735376 -24864554 + L1MB7 LINE L1 5936 6165 -19 2816 215 124 53 chrX 137735376 137735628 -24864302 - L2 LINE L2 -1231 2082 1849 2211 150 108 70 chrX 137735643 137735681 -24864249 + L1MC5 LINE L1 6960 6995 -966 222 37 0 0 chrX 137735681 137735708 -24864222 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1939 143 11 0 chrX 137735710 137735989 -24863941 - AluSx SINE Alu -30 282 1 2211 150 108 70 chrX 137735989 137736441 -24863489 + L1MC5 LINE L1 6995 7482 -479 2361 100 0 0 chrX 137736441 137736740 -24863190 + AluSx SINE Alu 1 299 -13 2211 150 108 70 chrX 137736740 137736845 -24863085 + L1MC5 LINE L1 7482 7582 -379 573 249 27 67 chrX 137736899 137737124 -24862806 + L1MC5 LINE L1 7711 7926 -35 2880 237 121 20 chrX 137738542 137739583 -24860347 - L2 LINE L2 -1481 1833 688 2044 123 31 0 chrX 137739706 137739999 -24859931 + AluSq SINE Alu 4 305 -8 189 216 18 153 chrX 137740001 137740112 -24859818 + L2 LINE L2 3022 3117 -196 219 333 49 53 chrX 137740323 137740569 -24859361 + L2 LINE L2 2151 2395 -919 467 200 173 100 chrX 137740694 137740954 -24858976 + L2 LINE L2 3035 3313 0 1111 172 0 0 chrX 137741144 137741318 -24858612 + FRAM SINE Alu 1 170 -6 266 291 0 0 chrX 137741371 137741450 -24858480 - L3b LINE CR1 -398 1185 1107 1909 68 0 4 chrX 137741712 137741947 -24857983 + AluSq SINE Alu 78 311 -2 979 235 32 4 chrX 137743202 137743453 -24856477 + MIR SINE MIR 5 262 0 2364 91 7 0 chrX 137743686 137743982 -24855948 + AluSx SINE Alu 1 298 -14 2527 162 33 22 chrX 137744060 137744516 -24855414 + LOR1b LTR ERV1 1 461 0 314 354 112 27 chrX 137744617 137745064 -24854866 + L2 LINE L2 2158 2642 -672 2330 111 0 0 chrX 137745082 137745380 -24854550 - AluSx SINE Alu -14 298 1 954 91 0 0 chrX 137745531 137745652 -24854278 - AluSg/x SINE Alu -15 297 177 1823 184 0 0 chrX 137745872 137746171 -24853759 - AluJo SINE Alu -13 299 1 558 284 76 103 chrX 137746179 137746397 -24853533 - L2 LINE L2 0 3272 3069 2015 137 121 18 chrX 137746397 137746785 -24853145 - MSTA LTR MaLR 0 428 1 558 284 76 103 chrX 137746785 137746985 -24852945 - L2 LINE L2 -203 3069 2865 1599 194 41 6 chrX 137747167 137747486 -24852444 - MER58B DNA MER1_type -1 340 11 274 279 0 12 chrX 137747521 137747607 -24852323 - L2 LINE L2 -1500 1814 1730 265 183 0 24 chrX 137747838 137747920 -24852010 + GA-rich Low_complexity Low_complexity 4 83 0 200 59 29 0 chrX 137748655 137748689 -24851241 + (TTTTTG)n Simple_repeat Simple_repeat 5 39 0 2348 73 21 0 chrX 137748695 137748983 -24850947 - AluSp SINE Alu -19 294 1 391 223 129 85 chrX 137749048 137749331 -24850599 - L1ME3A LINE L1 -85 6077 5808 351 0 0 0 chrX 137749331 137749370 -24850560 + (TG)n Simple_repeat Simple_repeat 2 40 0 2245 103 7 0 chrX 137749370 137749661 -24850269 - AluSx SINE Alu -19 293 1 391 223 129 85 chrX 137749661 137749875 -24850055 - L1ME3A LINE L1 -353 5809 5560 276 30 0 0 chrX 137749970 137750003 -24849927 + (TG)n Simple_repeat Simple_repeat 2 34 0 2132 101 3 24 chrX 137750171 137750469 -24849461 - AluY SINE Alu -19 292 1 2288 106 0 7 chrX 137750914 137751216 -24848714 + AluSq SINE Alu 1 300 -13 2417 64 0 0 chrX 137751459 137751767 -24848163 + AluY SINE Alu 1 308 0 592 133 0 19 chrX 137752025 137752130 -24847800 + L1PA8 LINE L1 6067 6169 -3 236 239 119 0 chrX 137752727 137752794 -24847136 - HsTC2 DNA Tc2 -1823 75 1 355 174 23 35 chrX 137753375 137753461 -24846469 + MIR3 SINE MIR 123 207 -1 393 222 257 0 chrX 137753517 137753661 -24846269 - MER5A DNA MER1_type 0 189 9 225 258 31 31 chrX 137753904 137754001 -24845929 - MIR3 SINE MIR -109 99 3 234 298 5 64 chrX 137754837 137755025 -24844905 + G-rich Low_complexity Low_complexity 2 178 0 585 99 0 0 chrX 137755819 137755900 -24844030 + MER51A LTR ERV1 1 81 -553 955 48 24 0 chrX 137755903 137756027 -24843903 - L1P LINE L1 -1574 4572 4446 2249 126 31 60 chrX 137756027 137756541 -24843389 + MER51A LTR ERV1 57 634 0 315 167 19 0 chrX 137756549 137756603 -24843327 - LTR40b LTR ERVL 0 462 408 2033 102 0 4 chrX 137756603 137756878 -24843052 + AluSx SINE Alu 1 274 -38 1614 118 0 0 chrX 137757250 137757461 -24842469 - AluSx SINE Alu -101 211 1 4055 209 57 58 chrX 137757461 137757807 -24842123 - L1ME LINE L1 -599 5565 5220 4186 119 2 0 chrX 137757807 137758414 -24841516 - L1PA13 LINE L1 -1 6162 5555 4055 209 57 58 chrX 137758414 137758690 -24841240 - L1ME LINE L1 -944 5220 4945 2311 107 0 16 chrX 137758690 137759008 -24840922 + AluSq SINE Alu 1 313 0 4055 209 57 58 chrX 137759008 137759053 -24840877 - L1ME LINE L1 -1219 4945 4901 2308 77 20 7 chrX 137759053 137759352 -24840578 + AluY SINE Alu 1 303 -8 4055 209 57 58 chrX 137759352 137760190 -24839740 - L1ME LINE L1 -1263 4901 4061 326 235 12 0 chrX 137760221 137760302 -24839628 - L2 LINE L2 -1045 2269 2188 296 198 0 37 chrX 137760395 137760476 -24839454 - MIR SINE MIR 0 262 185 599 312 104 22 chrX 137760487 137760843 -24839087 - L2 LINE L2 -1227 2087 1703 199 311 98 101 chrX 137760851 137761157 -24838773 + L2 LINE L2 2869 3173 -99 344 169 0 17 chrX 137761215 137761274 -24838656 + L1ME3A LINE L1 6061 6118 -52 243 222 0 0 chrX 137761361 137761406 -24838524 - L2 LINE L2 -18 3254 3210 236 343 61 10 chrX 137762094 137762193 -24837737 + MIR SINE MIR 53 156 -106 2097 103 3 20 chrX 137762544 137762874 -24837056 - AluSg SINE Alu 0 310 3 268 276 0 13 chrX 137763637 137763713 -24836217 + MIR SINE MIR 183 257 -5 2055 138 0 0 chrX 137763940 137764222 -24835708 + AluSx SINE Alu 1 282 -30 279 79 0 0 chrX 137764225 137764263 -24835667 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1579 179 3 21 chrX 137764263 137764548 -24835382 - AluJb SINE Alu -32 280 1 233 341 83 31 chrX 137764648 137764938 -24834992 - L2 LINE L2 -591 2723 2419 280 308 0 0 chrX 137766411 137766476 -24833454 - L2 LINE L2 -85 3187 3123 1896 94 98 14 chrX 137766891 137767168 -24832762 + AluSq SINE Alu 4 303 -10 2164 124 0 0 chrX 137767963 137768262 -24831668 + AluSx SINE Alu 1 299 -13 1127 249 14 36 chrX 137768270 137768345 -24831585 - L1ME1 LINE L1 -6 6160 6085 2324 84 0 34 chrX 137768345 137768667 -24831263 + AluSq SINE Alu 1 311 -2 1127 249 14 36 chrX 137768667 137768868 -24831062 - L1ME1 LINE L1 -81 6085 5890 606 179 164 36 chrX 137768896 137769091 -24830839 - L1ME4a LINE L1 -1 6120 5901 783 189 0 0 chrX 137769291 137769413 -24830517 - FLAM_C SINE Alu -20 123 2 219 319 50 25 chrX 137769551 137769670 -24830260 + L2 LINE L2 3164 3285 -28 1914 81 44 44 chrX 137770179 137770479 -24829451 + AluSq SINE Alu 15 314 0 579 274 11 21 chrX 137770620 137770810 -24829120 - MIR SINE MIR -15 247 60 192 308 0 0 chrX 137770793 137770845 -24829085 + MIR SINE MIR 210 261 -1 * 222 258 0 61 chrX 137772004 137772070 -24827860 - L2 LINE L2 0 3272 3211 284 219 12 61 chrX 137772208 137772223 -24827707 - L2 LINE L2 -1 3312 3298 333 0 0 0 chrX 137772223 137772260 -24827670 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 284 219 12 61 chrX 137772260 137772326 -24827604 - L2 LINE L2 -15 3298 3235 464 299 118 18 chrX 137772359 137772580 -24827350 - MIR SINE MIR 0 262 20 1632 190 46 0 chrX 137772619 137772924 -24827006 + MER58B DNA MER1_type 1 319 -22 276 267 0 0 chrX 137773702 137773762 -24826168 - L2 LINE L2 0 3313 3254 280 300 89 0 chrX 137773774 137773864 -24826066 - L2 LINE L2 -190 3082 2985 281 256 155 8 chrX 137774105 137774234 -24825696 - L2 LINE L2 -8 3305 3158 1170 185 8 67 chrX 137775279 137775517 -24824413 + MER58A DNA MER1_type 1 224 0 2368 106 0 3 chrX 137775765 137776076 -24823854 + AluSx SINE Alu 1 310 -2 409 271 231 16 chrX 137776083 137776338 -24823592 + MARNA DNA Mariner 110 419 -167 511 336 46 56 chrX 137778771 137779202 -24820728 - L2 LINE L2 0 3313 2887 1303 194 8 12 chrX 137779204 137779457 -24820473 + AluJo SINE Alu 25 276 -36 25 0 0 0 chrX 137779469 137779494 -24820436 + AT_rich Low_complexity Low_complexity 1 25 0 1727 150 38 3 chrX 137779716 137780003 -24819927 - AluJb SINE Alu -15 297 1 181 356 33 11 chrX 137780489 137780579 -24819351 - L2 LINE L2 -2897 417 326 234 0 0 0 chrX 137783928 137783954 -24815976 + (TTA)n Simple_repeat Simple_repeat 2 27 0 360 292 190 49 chrX 137784737 137784776 -24815154 + MIR SINE MIR 1 33 -229 704 188 129 64 chrX 137784776 137784978 -24814952 - MER58C DNA MER1_type 0 215 1 360 292 190 49 chrX 137784978 137785164 -24814766 + MIR SINE MIR 33 258 -4 851 95 14 14 chrX 137785636 137785783 -24814147 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 1645 150 9 70 chrX 137785823 137786150 -24813780 - AluJo SINE Alu -5 307 1 28 0 0 0 chrX 137786222 137786250 -24813680 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrX 137787134 137787156 -24812774 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2029 79 0 11 chrX 137787250 137787517 -24812413 - AluY SINE Alu -47 264 1 744 128 0 0 chrX 137787926 137788035 -24811895 + AluSg/x SINE Alu 201 309 0 2219 92 14 3 chrX 137788494 137788787 -24811143 - AluSq SINE Alu -17 296 1 1210 311 117 40 chrX 137788808 137789777 -24810153 + L2 LINE L2 1813 2855 -459 219 267 114 57 chrX 137790061 137790166 -24809764 + L2 LINE L2 3116 3226 -46 2293 146 12 22 chrX 137790297 137790700 -24809230 + L1MB7 LINE L1 5777 6175 -9 2133 113 0 23 chrX 137790735 137791036 -24808894 + AluSg SINE Alu 1 294 -16 2124 109 7 10 chrX 137791335 137791638 -24808292 - AluSq SINE Alu -11 302 1 2244 112 3 3 chrX 137792543 137792855 -24807075 - AluSx SINE Alu 0 312 1 1896 153 0 0 chrX 137793255 137793543 -24806387 - AluSx SINE Alu -4 308 21 2513 65 0 0 chrX 137793961 137794297 -24805633 - AluY SINE Alu 0 311 1 1985 127 32 0 chrX 137794304 137794587 -24805343 - AluSq SINE Alu -21 292 1 2331 89 3 25 chrX 137794630 137794946 -24804984 - AluSx SINE Alu -3 309 1 859 135 0 0 chrX 137794957 137795083 -24804847 - AluSg/x SINE Alu -13 299 174 29 0 0 0 chrX 137795960 137795989 -24803941 + AT_rich Low_complexity Low_complexity 1 29 0 1646 164 9 31 chrX 137797330 137797647 -24802283 + AluJo SINE Alu 1 310 -2 1013 166 0 24 chrX 137798205 137798374 -24801556 + FRAM SINE Alu 2 166 -10 2428 85 0 7 chrX 137798419 137798724 -24801206 + AluY SINE Alu 1 303 -8 21 0 0 0 chrX 137799303 137799324 -24800606 + AT_rich Low_complexity Low_complexity 1 21 0 426 232 321 0 chrX 137799708 137799898 -24800032 - L1ME4a LINE L1 -18 6103 5853 2128 97 17 3 chrX 137800163 137800452 -24799478 - AluSx SINE Alu -19 293 1 1532 251 129 41 chrX 137800452 137800583 -24799347 - L1MC4a LINE L1 -1636 6172 6054 2456 80 0 0 chrX 137800583 137800883 -24799047 - AluSq SINE Alu -13 300 1 1532 251 129 41 chrX 137800883 137801456 -24798474 - L1MC4a LINE L1 -1754 6054 5406 2336 114 0 0 chrX 137801675 137801983 -24797947 - AluSx SINE Alu -4 308 1 2291 91 7 0 chrX 137802993 137803289 -24796641 + AluSx SINE Alu 1 298 -14 492 234 14 48 chrX 137803342 137803487 -24796443 - MER105 DNA DNA 0 204 65 1317 75 0 0 chrX 137803895 137804055 -24795875 - L1PA11 LINE L1 0 6174 6015 21 0 0 0 chrX 137804056 137804077 -24795853 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chrX 137804093 137804120 -24795810 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 276 208 28 28 chrX 137804344 137804416 -24795514 + L1P LINE L1 5346 5417 -734 2265 102 0 0 chrX 137804468 137804761 -24795169 - AluSq SINE Alu -20 293 1 708 139 101 177 chrX 137804788 137805025 -24794905 + MER20 DNA MER1_type 1 219 0 617 246 183 47 chrX 137805141 137805568 -24794362 - L1ME4a LINE L1 -74 6047 5563 567 283 114 18 chrX 137805579 137805833 -24794097 + L1ME4a LINE L1 5559 5854 -267 2239 103 0 17 chrX 137805833 137806135 -24793795 - AluSp SINE Alu -16 297 1 567 283 114 18 chrX 137806135 137806212 -24793718 + L1ME4a LINE L1 5854 5922 -199 194 254 0 36 chrX 137808653 137808708 -24791222 + MIR SINE MIR 23 75 -133 498 135 0 0 chrX 137808748 137808822 -24791108 + L1PB4 LINE L1 6079 6152 -4 22 0 0 0 chrX 137808822 137808844 -24791086 + AT_rich Low_complexity Low_complexity 1 22 0 1439 100 0 11 chrX 137808954 137809144 -24790786 - AluSx SINE Alu -124 188 1 272 327 106 0 chrX 137809198 137809302 -24790628 - L2 LINE L2 -26 3246 3132 241 181 0 213 chrX 137809314 137809411 -24790519 + MIR3 SINE MIR 102 168 -40 2238 86 10 0 chrX 137809411 137809713 -24790217 + AluY SINE Alu 1 305 -6 241 181 0 213 chrX 137809713 137809742 -24790188 + MIR3 SINE MIR 168 201 -7 180 294 147 0 chrX 137809902 137809970 -24789960 + L2 LINE L2 3141 3218 -54 2456 87 0 0 chrX 137812082 137812391 -24787539 + AluSx SINE Alu 1 309 -3 1432 192 67 30 chrX 137812666 137812994 -24786936 + MER58B DNA MER1_type 1 340 -1 1003 238 17 12 chrX 137813006 137813246 -24786684 + MIR SINE MIR 21 261 -1 522 309 7 13 chrX 137813321 137813470 -24786460 - MIR SINE MIR -109 153 6 285 183 33 17 chrX 137814624 137814684 -24785246 - MLT1J LTR MaLR -450 61 1 237 211 0 0 chrX 137814724 137814781 -24785149 + CT-rich Low_complexity Low_complexity 1 57 0 1303 178 0 13 chrX 137814815 137815045 -24784885 + AluJo SINE Alu 85 311 -1 484 304 138 19 chrX 137815045 137815305 -24784625 - L2 LINE L2 -1664 1650 1360 2111 214 83 20 chrX 137815305 137815809 -24784121 - MLT1F LTR MaLR -6 536 1 500 329 69 67 chrX 137815821 137816313 -24783617 - L2 LINE L2 -1971 1343 851 21 0 0 0 chrX 137816386 137816407 -24783523 + AT_rich Low_complexity Low_complexity 1 21 0 518 245 147 29 chrX 137816741 137817148 -24782782 - MLT1J LTR MaLR 0 511 2 5046 117 105 169 chrX 137817199 137817753 -24782177 - L1MC3 LINE L1 -1 7784 7197 262 257 52 59 chrX 137817753 137817889 -24782041 - MLT1J LTR MaLR -420 147 13 5046 117 105 169 chrX 137817889 137817957 -24781973 - L1MC3 LINE L1 -588 7197 7126 1994 115 0 61 chrX 137817957 137818269 -24781661 - AluSq SINE Alu -20 293 1 5046 117 105 169 chrX 137818269 137818934 -24780996 - L1MC3 LINE L1 -659 7126 6451 1095 204 27 0 chrX 137819037 137819257 -24780673 - L1MC3 LINE L1 -1305 6480 6255 1990 141 0 3 chrX 137819264 137819555 -24780375 - AluSx SINE Alu -22 290 1 921 158 169 0 chrX 137820002 137820179 -24779751 - MER3 DNA MER1_type -1 208 2 2116 139 0 3 chrX 137820529 137820839 -24779091 - AluSx SINE Alu -3 309 1 546 16 0 0 chrX 137820889 137820952 -24778978 + (TA)n Simple_repeat Simple_repeat 1 63 0 1723 249 17 40 chrX 137821032 137821561 -24778369 + L1ME1 LINE L1 5649 6165 -1 2200 116 10 0 chrX 137821621 137821915 -24778015 - AluSx SINE Alu -15 297 1 800 228 138 79 chrX 137822374 137822882 -24777048 - L1ME4a LINE L1 -107 6014 5477 409 220 233 7 chrX 137823366 137823516 -24776414 - MIR SINE MIR -12 250 67 725 233 22 22 chrX 137823998 137824178 -24775752 + MIR SINE MIR 40 219 -43 1083 290 38 62 chrX 137824196 137824266 -24775664 - L2 LINE L2 0 3313 3243 2351 107 0 0 chrX 137824266 137824564 -24775366 - AluSx SINE Alu -14 298 1 1392 147 0 56 chrX 137824565 137824796 -24775134 + MER20 DNA MER1_type 1 218 -1 1083 290 38 62 chrX 137824796 137825241 -24774689 - L2 LINE L2 -70 3243 2810 1090 189 57 5 chrX 137825241 137825453 -24774477 - MER58A DNA MER1_type 0 224 2 1083 290 38 62 chrX 137825453 137825584 -24774346 - L2 LINE L2 -503 2810 2677 295 290 48 40 chrX 137825619 137825743 -24774187 + L2 LINE L2 2848 2972 -300 565 288 45 6 chrX 137825903 137826080 -24773850 - MIR SINE MIR -31 231 48 573 242 50 0 chrX 137826123 137826243 -24773687 + L2 LINE L2 3139 3264 -8 724 308 106 57 chrX 137826571 137827107 -24772823 - L2 LINE L2 -1 3271 2720 1505 103 0 0 chrX 137829145 137829339 -24770591 + AluSq SINE Alu 1 194 -119 514 107 0 0 chrX 137829339 137829414 -24770516 + AluSq SINE Alu 236 310 -2 1868 157 0 14 chrX 137829780 137830099 -24769831 - AluSx SINE Alu 0 315 1 512 230 97 48 chrX 137830125 137830290 -24769640 - MIR3 SINE MIR -2 206 34 2416 81 0 0 chrX 137830592 137830889 -24769041 - AluSg SINE Alu -13 297 1 2386 131 12 9 chrX 137831832 137832168 -24767762 + MER1B DNA MER1_type 1 337 0 2714 206 89 54 chrX 137832934 137833462 -24766468 - L1ME3 LINE L1 -2 6160 5652 293 0 27 0 chrX 137833462 137833499 -24766431 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1565 173 3 28 chrX 137833503 137833787 -24766143 - AluJb SINE Alu -35 277 1 2714 206 89 54 chrX 137833787 137834239 -24765691 - L1ME3 LINE L1 -512 5650 5141 1258 182 0 9 chrX 137834244 137834458 -24765472 - AluJo SINE Alu -16 296 85 5433 228 51 44 chrX 137834458 137835283 -24764647 - L1ME3 LINE L1 -999 5147 4329 2211 92 0 0 chrX 137835283 137835596 -24764334 - AluY SINE Alu 0 313 1 5433 228 51 44 chrX 137835596 137836468 -24763462 - L1ME3 LINE L1 -1817 4329 3437 359 126 23 39 chrX 137836810 137837058 -24762872 + AluJo SINE Alu 5 316 0 500 304 23 51 chrX 137837478 137837695 -24762235 + MIR SINE MIR 2 212 -50 2193 109 16 0 chrX 137838566 137838870 -24761060 + AluSx SINE Alu 1 309 -3 2217 167 75 36 chrX 137839446 137839889 -24760041 - MLT1C LTR MaLR -7 460 1 2197 117 0 10 chrX 137839903 137840203 -24759727 - AluSx SINE Alu -15 297 1 824 284 62 35 chrX 137840371 137840776 -24759154 - L1MC4a LINE L1 -1814 5994 5579 738 211 0 8 chrX 137840951 137841084 -24758846 - FLAM_A SINE Alu -1 132 1 250 91 30 45 chrX 137841366 137841432 -24758498 - HAL1b LINE L1 -1 1347 1283 263 242 129 40 chrX 137841970 137842094 -24757836 - L2 LINE L2 -446 2868 2734 423 197 248 17 chrX 137845740 137845857 -24754073 - MIR SINE MIR -111 151 8 446 246 51 29 chrX 137846212 137846350 -24753580 + MIR SINE MIR 1 141 -121 318 196 196 9 chrX 137846349 137846456 -24753474 - L2 LINE L2 -1 3312 3186 * 2195 102 3 31 chrX 137846561 137846883 -24753047 - AluSq SINE Alu 0 313 1 967 208 0 62 chrX 137846883 137847053 -24752877 - AluJb SINE Alu -11 301 146 1816 169 0 7 chrX 137847053 137847380 -24752550 - AluSx SINE Alu 0 312 1 967 208 0 62 chrX 137847380 137847439 -24752491 - AluJb SINE Alu -166 146 85 567 198 33 0 chrX 137847439 137847530 -24752400 - AluJb SINE Alu -62 250 157 302 303 76 0 chrX 137847535 137847654 -24752276 - L3 LINE CR1 -199 1378 1251 1771 151 75 0 chrX 137847837 137848115 -24751815 + AluSx SINE Alu 1 299 -13 2108 115 0 0 chrX 137848459 137848745 -24751185 + AluSx SINE Alu 1 286 -26 24 0 0 0 chrX 137848745 137848769 -24751161 + AT_rich Low_complexity Low_complexity 1 24 0 238 191 118 0 chrX 137848892 137848960 -24750970 + L3 LINE CR1 736 811 -766 409 286 218 0 chrX 137848968 137849174 -24750756 - L3 LINE CR1 -576 1001 751 1916 194 131 50 chrX 137849180 137849509 -24750421 - L1ME3A LINE L1 -11 6159 5765 1713 167 0 42 chrX 137849509 137849821 -24750109 - AluJo SINE Alu -13 299 1 1916 194 131 50 chrX 137849821 137850047 -24749883 - L1ME3A LINE L1 -405 5765 5559 1802 159 3 7 chrX 137850048 137850344 -24749586 + AluJb SINE Alu 1 295 -17 1711 194 27 52 chrX 137850366 137850773 -24749157 + MLT2C1 LTR ERVL 1 397 0 1361 189 19 11 chrX 137850774 137851038 -24748892 + MLT1-int LTR MaLR 2 267 -1104 2334 106 3 0 chrX 137851074 137851385 -24748545 - AluSx SINE Alu 0 312 1 686 192 28 23 chrX 137851397 137851574 -24748356 + L1MDa LINE L1 2392 2569 -3971 1326 216 47 26 chrX 137851600 137851658 -24748272 + L1MDa LINE L1 4013 4068 -2472 336 24 0 0 chrX 137851658 137851699 -24748231 + (CA)n Simple_repeat Simple_repeat 2 42 0 1326 216 47 26 chrX 137851699 137852024 -24747906 + L1MDa LINE L1 4068 4404 -2136 382 74 19 0 chrX 137852024 137852078 -24747852 - MADE1 DNA Mariner 0 80 26 1974 98 0 12 chrX 137852079 137852334 -24747596 + AluSx SINE Alu 1 252 -60 1536 240 22 37 chrX 137852358 137852553 -24747377 + L1MDa LINE L1 4693 4890 -1650 2292 93 3 13 chrX 137852553 137852904 -24747026 + AluSq SINE Alu 1 313 0 1536 240 22 37 chrX 137852904 137853217 -24746713 + L1MDa LINE L1 4890 5193 -1347 1198 241 9 37 chrX 137853218 137853481 -24746449 - L1MDa LINE L1 -6152 388 134 2303 155 11 16 chrX 137853481 137853848 -24746082 - MLT1A1 LTR MaLR 0 365 1 1198 241 9 37 chrX 137853848 137853907 -24746023 - L1MDa LINE L1 -6406 134 75 1791 134 6 75 chrX 137853937 137854272 -24745658 - AluSx SINE Alu 0 312 1 2204 115 3 6 chrX 137854356 137854668 -24745262 + AluSx SINE Alu 1 311 -1 2133 118 0 20 chrX 137854955 137855259 -24744671 - AluSx SINE Alu -14 298 1 348 222 68 43 chrX 137855308 137855380 -24744550 - L3 LINE CR1 -820 757 679 1937 132 30 0 chrX 137855380 137855554 -24744376 - AluSx SINE Alu -7 305 117 243 0 0 0 chrX 137855554 137855581 -24744349 + (TG)n Simple_repeat Simple_repeat 2 28 0 1937 132 30 0 chrX 137855581 137855702 -24744228 - AluSx SINE Alu -195 117 1 348 222 68 43 chrX 137855702 137855746 -24744184 - L3 LINE CR1 -898 679 638 5489 118 55 42 chrX 137856076 137856103 -24743827 - Tigger3b DNA MER2_type -1797 1231 1206 4131 143 40 46 chrX 137856103 137856250 -24743680 + LTR8A LTR ERV1 1 147 -580 2314 75 0 4 chrX 137856250 137856552 -24743378 - AluSc SINE Alu 0 301 1 4131 143 40 46 chrX 137856552 137857135 -24742795 + LTR8A LTR ERV1 147 727 0 5489 118 55 42 chrX 137857135 137857605 -24742325 - Tigger3b DNA MER2_type -1822 1206 744 1740 137 30 11 chrX 137857605 137857876 -24742054 + AluJb SINE Alu 12 287 -25 5489 118 55 42 chrX 137857876 137858351 -24741579 - Tigger3b DNA MER2_type -2284 744 245 1606 143 65 32 chrX 137858377 137858656 -24741274 + AluJo SINE Alu 6 293 -19 314 276 112 17 chrX 137858656 137858772 -24741158 - L2 LINE L2 -21 3251 3125 218 182 26 65 chrX 137858766 137858843 -24741087 - MIR SINE MIR -82 126 53 * 1019 203 92 4 chrX 137860951 137861178 -24738752 - Tigger3b DNA MER2_type -984 247 1 1583 141 19 75 chrX 137861199 137861518 -24738412 - AluSg1 SINE Alu -8 301 1 1202 175 0 0 chrX 137861521 137861721 -24738209 - AluSg/x SINE Alu -19 293 94 5565 113 28 13 chrX 137911817 137912162 -24687768 + L1MA5 LINE L1 5433 5771 -529 249 33 0 0 chrX 137912162 137912192 -24687738 + (CA)n Simple_repeat Simple_repeat 2 31 0 5565 113 28 13 chrX 137912192 137912570 -24687360 + L1MA5 LINE L1 5771 6174 -126 2056 87 44 7 chrX 137912570 137912873 -24687057 + AluSx SINE Alu 1 313 0 5565 113 28 13 chrX 137912873 137913000 -24686930 + L1MA5 LINE L1 6174 6298 -2 1169 210 19 0 chrX 137913087 137913301 -24686629 - MER58B DNA MER1_type 0 341 124 1042 213 11 75 chrX 137913301 137913676 -24686254 + L1MC5 LINE L1 7560 7910 -51 1367 97 5 5 chrX 137913692 137913878 -24686052 + AluSq SINE Alu 95 280 -33 263 28 28 0 chrX 137913878 137913914 -24686016 + (CAA)n Simple_repeat Simple_repeat 2 38 0 269 333 40 79 chrX 137913958 137914135 -24685795 - L2 LINE L2 -76 3196 3027 211 322 151 7 chrX 137914143 137914289 -24685641 - L2 LINE L2 -779 2535 2369 218 262 350 0 chrX 137914720 137914823 -24685107 + MIR SINE MIR 3 141 -121 185 262 83 24 chrX 137914980 137915064 -24684866 - L3b LINE CR1 -199 1384 1296 525 313 57 23 chrX 137915646 137915998 -24683932 + L2 LINE L2 1536 1899 -1415 383 364 0 0 chrX 137916011 137916121 -24683809 + L2 LINE L2 2609 2718 -596 2189 193 53 46 chrX 137916121 137916682 -24683248 + L1MD2 LINE L1 5795 6359 0 661 291 141 39 chrX 137916683 137917203 -24682727 + L2 LINE L2 2707 3270 -2 21 36 0 0 chrX 137917560 137917588 -24682342 + GC_rich Low_complexity Low_complexity 1 28 0 316 330 89 68 chrX 137917666 137918238 -24681692 + L1M2 LINE L1 756 1339 -5510 22 0 0 0 chrX 137920354 137920376 -24679554 + AT_rich Low_complexity Low_complexity 1 22 0 271 265 24 12 chrX 137921078 137921161 -24678769 - L2 LINE L2 -1 3271 3188 607 200 172 17 chrX 137921542 137921722 -24678208 + MER20 DNA MER1_type 3 210 -9 2239 117 0 3 chrX 137921846 137922154 -24677776 + AluSx SINE Alu 1 307 -5 314 306 26 38 chrX 137922193 137922396 -24677534 - MIR SINE MIR 0 262 9 466 269 109 35 chrX 137922555 137922781 -24677149 - MIR SINE MIR -6 256 14 2318 89 3 3 chrX 137922854 137923158 -24676772 + AluSx SINE Alu 1 304 -8 324 200 108 25 chrX 137924051 137924171 -24675759 - L1ME4a LINE L1 -14 6107 5978 341 166 40 63 chrX 137924422 137924532 -24675398 - MIR3 SINE MIR -8 200 86 2287 91 0 0 chrX 137925127 137925423 -24674507 - AluSx SINE Alu -16 296 1 2251 84 3 0 chrX 137926700 137926984 -24672946 - AluSq SINE Alu -14 299 15 279 0 0 0 chrX 137927403 137927434 -24672496 + (CA)n Simple_repeat Simple_repeat 2 32 0 537 248 15 15 chrX 137927864 137928066 -24671864 - L1ME2 LINE L1 -3 6331 5986 217 219 0 0 chrX 137928469 137928510 -24671420 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 1433 162 20 12 chrX 137929326 137929579 -24670351 + L1MC2 LINE L1 6081 6335 -9 2001 142 0 0 chrX 137929676 137929986 -24669944 + AluSx SINE Alu 1 310 0 1157 187 19 0 chrX 137930828 137931071 -24668859 - AluJo SINE Alu 0 317 71 2272 112 0 0 chrX 137932257 137932560 -24667370 + AluSx SINE Alu 1 303 -9 473 297 84 7 chrX 137932639 137932794 -24667136 + MIR3 SINE MIR 6 172 -36 1049 139 36 6 chrX 137932842 137933008 -24666922 + AluJo SINE Alu 63 233 -79 753 169 0 34 chrX 137933008 137933156 -24666774 + MER5A DNA MER1_type 45 187 -2 241 204 0 20 chrX 137933175 137933224 -24666706 + MER5B DNA MER1_type 1 48 -130 1090 208 51 99 chrX 137933244 137933619 -24666311 - MLT1A1 LTR MaLR -8 357 1 207 131 213 33 chrX 137933619 137933680 -24666250 + MER5B DNA MER1_type 107 178 0 1668 129 114 4 chrX 137934628 137934891 -24665039 - AluSg1 SINE Alu -17 292 1 280 276 313 5 chrX 137937276 137937468 -24662462 - MIR SINE MIR -10 252 2 2179 103 3 10 chrX 137937621 137937921 -24662009 - AluSc SINE Alu -11 298 1 318 266 313 5 chrX 137938466 137938658 -24661272 - MIR SINE MIR -10 252 2 308 235 24 12 chrX 137939344 137939429 -24660501 - L2 LINE L2 -17 3296 3211 2017 100 12 70 chrX 137942280 137942610 -24657320 - AluSx SINE Alu -1 311 1 2480 85 0 0 chrX 137943144 137943449 -24656481 - AluSx SINE Alu -7 305 1 863 217 133 52 chrX 137943907 137944104 -24655826 + Charlie8 DNA MER1_type 4 227 -114 2379 90 3 3 chrX 137944104 137944414 -24655516 - AluY SINE Alu -1 310 1 863 217 133 52 chrX 137944414 137944465 -24655465 + Charlie8 DNA MER1_type 227 272 -69 420 221 63 0 chrX 137944822 137944917 -24655013 - MER5A DNA MER1_type -77 112 12 654 299 105 61 chrX 137945567 137946183 -24653747 + L1ME4a LINE L1 5301 5923 -198 297 0 0 0 chrX 137947430 137947463 -24652467 + (CA)n Simple_repeat Simple_repeat 2 34 0 237 132 0 0 chrX 137948555 137948593 -24651337 + (CAT)n Simple_repeat Simple_repeat 2 39 0 931 161 13 0 chrX 137948866 137949021 -24650909 + AluSg/x SINE Alu 137 293 -19 207 0 0 0 chrX 137949028 137949051 -24650879 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2122 137 0 6 chrX 137949159 137949473 -24650457 - AluSx SINE Alu 0 312 1 186 331 53 53 chrX 137949941 137950074 -24649856 + L2 LINE L2 3180 3312 -1 427 264 52 17 chrX 137950259 137950433 -24649497 - L1MC4 LINE L1 -27 8015 7836 198 0 0 0 chrX 137951143 137951165 -24648765 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 2209 100 0 3 chrX 137951169 137951459 -24648471 - AluSx SINE Alu -23 289 1 24 0 0 0 chrX 137952805 137952829 -24647101 + AT_rich Low_complexity Low_complexity 1 24 0 2411 87 7 0 chrX 137953231 137953540 -24646390 + AluSx SINE Alu 1 311 -1 21 0 0 0 chrX 137953647 137953668 -24646262 + AT_rich Low_complexity Low_complexity 1 21 0 195 211 0 39 chrX 137954268 137954320 -24645610 + MIR SINE MIR 89 138 -124 234 247 0 71 chrX 137955259 137955344 -24644586 - MIR SINE MIR -59 203 125 22 70 0 0 chrX 137955512 137955555 -24644375 + AT_rich Low_complexity Low_complexity 1 43 0 2134 94 28 7 chrX 137956996 137957283 -24642647 + AluSg SINE Alu 1 293 -17 387 56 0 0 chrX 137957284 137957338 -24642592 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 436 238 127 94 chrX 137957359 137957720 -24642210 + L1MC4a LINE L1 5741 6113 -1695 2044 159 26 112 chrX 137957769 137958277 -24641653 + L1MB5 LINE L1 5693 6156 -18 645 179 0 9 chrX 137958278 137958384 -24641546 - FLAM_C SINE Alu -11 132 28 231 125 0 21 chrX 137958985 137959033 -24640897 + L1MB8 LINE L1 6002 6048 -130 1175 208 21 8 chrX 137960000 137960236 -24639694 - MIR SINE MIR -21 241 3 567 151 23 0 chrX 137960870 137960956 -24638974 - MER57A LTR ERV1 -25 378 291 546 288 69 6 chrX 137961202 137961362 -24638568 + MIR3 SINE MIR 36 205 -3 278 333 59 47 chrX 137964315 137964570 -24635360 + L2 LINE L2 2827 3084 -188 219 260 320 0 chrX 137966116 137966216 -24633714 - L2 LINE L2 0 3272 3141 461 209 18 9 chrX 137966380 137966490 -24633440 - L2 LINE L2 -1 3312 3202 31 26 0 0 chrX 137970654 137970692 -24629238 + AT_rich Low_complexity Low_complexity 1 38 0 245 311 0 0 chrX 137971013 137971074 -24628856 - L2 LINE L2 -6 3266 3206 262 111 0 0 chrX 137971122 137971158 -24628772 - MER50-int LTR ERV1 -7163 42 7 3756 148 54 30 chrX 137971158 137971298 -24628632 - MER50 LTR ERV1 -12 722 587 2262 111 0 0 chrX 137971298 137971595 -24628335 + AluSx SINE Alu 1 297 -15 3756 148 54 30 chrX 137971595 137972159 -24627771 - MER50 LTR ERV1 -147 587 1 2078 136 0 0 chrX 137972499 137972793 -24627137 + AluSx SINE Alu 1 294 -18 2248 95 14 7 chrX 137972897 137973193 -24626737 + AluSc SINE Alu 4 301 -8 273 300 53 40 chrX 137977070 137977220 -24622710 + MIR3 SINE MIR 34 185 -23 240 154 0 39 chrX 137977719 137977771 -24622159 - L1MC4 LINE L1 -1333 6709 6660 396 264 27 9 chrX 137978421 137978531 -24621399 - MIR SINE MIR -33 229 118 841 268 13 13 chrX 137978613 137978837 -24621093 + MIR SINE MIR 36 259 -3 259 303 0 0 chrX 137979345 137979411 -24620519 + G-rich Low_complexity Low_complexity 1 66 0 192 221 150 53 chrX 137980121 137980234 -24619696 + MIR3 SINE MIR 15 138 -70 231 88 0 0 chrX 137980246 137980280 -24619650 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 22 56 0 0 chrX 137981215 137981251 -24618679 + AT_rich Low_complexity Low_complexity 1 36 0 367 160 173 0 chrX 137983471 137983546 -24616384 - MIR SINE MIR -112 150 63 538 263 132 19 chrX 137983799 137984012 -24615918 + MIR SINE MIR 14 250 -12 434 220 114 38 chrX 137984133 137984265 -24615665 + MIR SINE MIR 47 188 -74 2330 107 0 0 chrX 137984272 137984572 -24615358 + AluSx SINE Alu 1 300 -12 349 280 45 57 chrX 137984916 137985081 -24614849 - MIR3 SINE MIR -7 201 38 3851 118 13 13 chrX 137985599 137986126 -24613804 + MER1A DNA MER1_type 1 527 0 743 214 121 0 chrX 137986310 137986483 -24613447 + L1MB5 LINE L1 5981 6174 0 22 0 0 0 chrX 137986523 137986545 -24613385 + AT_rich Low_complexity Low_complexity 1 22 0 1027 120 0 0 chrX 137986659 137986859 -24613071 + FLAM_C SINE Alu 1 200 0 920 160 45 0 chrX 137986860 137987042 -24612888 + AluJo SINE Alu 120 308 0 2188 131 0 3 chrX 137988188 137988501 -24611429 + AluSx SINE Alu 1 312 0 2401 92 0 0 chrX 137989274 137989567 -24610363 - AluSx SINE Alu -19 293 1 184 238 0 0 chrX 137990205 137990247 -24609683 - MIR3 SINE MIR -7 201 160 925 139 0 7 chrX 137990592 137990736 -24609194 + FLAM_C SINE Alu 1 143 0 225 221 221 0 chrX 137990739 137990834 -24609096 + MIR SINE MIR 136 251 -11 567 274 56 47 chrX 137990870 137991104 -24608826 + MIR SINE MIR 14 249 -13 229 208 57 0 chrX 137991643 137991696 -24608234 + LTR24 LTR ERV1 139 194 -273 2480 49 0 3 chrX 137991745 137992033 -24607897 - AluY SINE Alu -16 295 9 303 293 85 0 chrX 137992170 137992276 -24607654 + L2 LINE L2 3117 3231 -41 778 231 46 19 chrX 137992578 137992794 -24607136 - MIR SINE MIR -6 256 35 1932 142 3 36 chrX 137993249 137993558 -24606372 - AluJo SINE Alu -13 299 1 784 251 67 32 chrX 137993788 137994172 -24605758 + L1M1 LINE L1 5065 5469 -765 1901 143 3 53 chrX 137994172 137994494 -24605436 + AluJb SINE Alu 2 307 -5 784 251 67 32 chrX 137994494 137994518 -24605412 + L1M1 LINE L1 5469 5491 -743 492 87 0 103 chrX 137994513 137994535 -24605395 + L1MA5 LINE L1 6158 6181 -122 * 2160 133 3 0 chrX 137994535 137994835 -24605095 + AluSx SINE Alu 1 301 -11 492 87 0 103 chrX 137994835 137994909 -24605021 + L1MA5 LINE L1 6181 6248 -55 509 243 133 14 chrX 137994916 137995232 -24604698 + L1ME LINE L1 5188 5545 -747 2142 120 0 0 chrX 137997263 137997582 -24602348 + AluSq SINE Alu 1 319 0 279 217 17 0 chrX 138000056 138000116 -24599814 - MIR3 SINE MIR -7 201 141 877 179 0 0 chrX 138000127 138000272 -24599658 - AluJb SINE Alu -22 290 146 279 0 0 0 chrX 138000380 138000411 -24599519 + (TA)n Simple_repeat Simple_repeat 1 31 0 924 125 0 29 chrX 138000411 138000547 -24599383 - FLAM_C SINE Alu -1 132 1 224 157 196 0 chrX 138003143 138003194 -24596736 + MIR3 SINE MIR 143 203 -5 524 259 132 36 chrX 138003271 138003491 -24596439 + L1ME LINE L1 5512 5752 -369 2357 91 3 0 chrX 138003694 138003990 -24595940 - AluSx SINE Alu -15 297 1 261 0 0 0 chrX 138004052 138004081 -24595849 + (A)n Simple_repeat Simple_repeat 1 29 0 2426 99 0 0 chrX 138005883 138006195 -24593735 + AluSx SINE Alu 1 312 0 212 258 45 0 chrX 138007088 138007154 -24592776 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 5283 31 0 0 chrX 138008141 138008724 -24591206 - L1PA4 LINE L1 0 6155 5573 2320 107 0 0 chrX 138010343 138010643 -24589287 + AluSx SINE Alu 1 300 -12 925 120 0 0 chrX 138011051 138011176 -24588754 - AluSq/x SINE Alu -188 125 1 342 163 93 0 chrX 138011334 138011420 -24588510 + Charlie5 DNA MER1_type 2454 2547 -65 2275 108 0 0 chrX 138013839 138014135 -24585795 + AluSg SINE Alu 1 296 -14 2415 86 0 0 chrX 138015882 138016186 -24583744 + AluY SINE Alu 1 304 -7 317 266 114 32 chrX 138017283 138017441 -24582489 + MER5B DNA MER1_type 2 172 -6 1550 147 120 0 chrX 138018351 138018609 -24581321 + AluJb SINE Alu 1 289 -23 484 255 65 43 chrX 138019106 138019290 -24580640 - MIR SINE MIR -21 241 54 364 228 164 23 chrX 138019498 138019669 -24580261 + L3 LINE CR1 1377 1571 -6 22 35 0 0 chrX 138019820 138019849 -24580081 + AT_rich Low_complexity Low_complexity 1 29 0 249 226 36 12 chrX 138019944 138020028 -24579902 + (TA)n Simple_repeat Simple_repeat 2 87 0 306 0 0 0 chrX 138021866 138021900 -24578030 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 202 209 0 0 chrX 138022132 138022175 -24577755 - L2 LINE L2 0 3272 3230 28 0 0 0 chrX 138022775 138022803 -24577127 + AT_rich Low_complexity Low_complexity 1 28 0 2496 90 0 0 chrX 138022811 138023121 -24576809 + AluSx SINE Alu 1 310 -2 2223 86 3 20 chrX 138023226 138023527 -24576403 + AluSx SINE Alu 1 296 -16 965 235 58 70 chrX 138023752 138024137 -24575793 + L1MC4 LINE L1 7445 7826 -216 1731 126 3 70 chrX 138024137 138024438 -24575492 + AluSx SINE Alu 17 297 -15 965 235 58 70 chrX 138024438 138024469 -24575461 + L1MC4 LINE L1 7826 7856 -186 2125 137 0 0 chrX 138024502 138024801 -24575129 - AluSx SINE Alu -13 299 1 529 243 104 17 chrX 138025117 138025290 -24574640 - Charlie8 DNA MER1_type -2146 271 84 267 37 37 56 chrX 138025292 138025346 -24574584 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 2186 118 3 9 chrX 138025350 138025665 -24574265 + AluSq SINE Alu 1 313 0 300 179 179 8 chrX 138025687 138025804 -24574126 - L1MC5 LINE L1 -337 7624 7488 195 42 0 0 chrX 138026151 138026175 -24573755 + (TCTCC)n Simple_repeat Simple_repeat 1 24 0 717 260 81 10 chrX 138027105 138027348 -24572582 - MIR SINE MIR 0 262 11 1802 152 7 32 chrX 138027354 138027663 -24572267 - AluSx SINE Alu -9 303 3 404 136 204 23 chrX 138027900 138027988 -24571942 + L1PB4 LINE L1 6053 6156 0 297 149 0 0 chrX 138028509 138028556 -24571374 - MER5A DNA MER1_type -52 137 91 301 264 0 0 chrX 138028704 138028776 -24571154 + L1MC4 LINE L1 6642 6713 -1329 399 269 192 47 chrX 138031657 138031850 -24568080 + MIR SINE MIR 28 248 -14 230 284 20 49 chrX 138031868 138031970 -24567960 - MIR SINE MIR 0 262 164 529 126 42 15 chrX 138031970 138032208 -24567722 + AluJ SINE Alu 1 294 -18 2052 123 0 0 chrX 138032971 138033290 -24566640 + AluSx SINE Alu 1 319 0 494 31 0 15 chrX 138033785 138033850 -24566080 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 2270 106 0 3 chrX 138033850 138034151 -24565779 - AluSq SINE Alu -13 300 1 261 219 164 0 chrX 138034302 138034375 -24565555 - MIR SINE MIR -59 149 65 2109 113 0 3 chrX 138034380 138034704 -24565226 - AluSx SINE Alu 0 323 1 365 145 0 0 chrX 138034766 138034828 -24565102 - AluSx SINE Alu 0 302 241 1091 143 0 0 chrX 138034833 138034987 -24564943 - AluSx SINE Alu -150 162 9 1954 141 3 16 chrX 138035035 138035347 -24564583 + AluJb SINE Alu 1 308 -4 2309 90 0 0 chrX 138035453 138035741 -24564189 - AluSq SINE Alu -25 288 1 311 223 42 87 chrX 138035773 138035986 -24563944 - L1MB7 LINE L1 -304 5880 5679 890 177 0 19 chrX 138036145 138036303 -24563627 - FRAM SINE Alu -8 158 4 2020 142 10 7 chrX 138036450 138036759 -24563171 - AluSx SINE Alu -2 310 1 24 32 0 0 chrX 138037125 138037156 -24562774 + AT_rich Low_complexity Low_complexity 1 31 0 595 294 22 5 chrX 138037172 138037356 -24562574 - MIR SINE MIR -60 202 16 191 240 10 87 chrX 138037347 138037451 -24562479 + MIR SINE MIR 101 196 -66 * 2197 127 0 0 chrX 138037652 138037952 -24561978 + AluSx SINE Alu 1 300 -12 503 273 8 0 chrX 138038537 138038669 -24561261 - MIR SINE MIR -52 210 78 346 235 37 0 chrX 138038727 138038808 -24561122 + MIR SINE MIR 30 113 -95 32 26 0 0 chrX 138040005 138040044 -24559886 + AT_rich Low_complexity Low_complexity 1 39 0 1986 120 0 42 chrX 138040102 138040411 -24559519 - AluSx SINE Alu -16 296 1 442 274 59 0 chrX 138040491 138040626 -24559304 - MIR SINE MIR -41 221 79 246 32 0 0 chrX 138041247 138041278 -24558652 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1984 119 7 31 chrX 138041365 138041658 -24558272 - AluSx SINE Alu -21 291 6 213 271 0 34 chrX 138042083 138042142 -24557788 + L2 LINE L2 3215 3271 -1 182 88 0 29 chrX 138042187 138042221 -24557709 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 270 193 0 0 chrX 138042443 138042500 -24557430 + (TG)n Simple_repeat Simple_repeat 2 58 0 1825 181 0 7 chrX 138042558 138042862 -24557068 - AluJo SINE Alu -10 302 1 972 184 7 42 chrX 138043103 138043311 -24556619 + L1P4 LINE L1 5366 5582 -579 2034 118 3 46 chrX 138043391 138043697 -24556233 + AluSx SINE Alu 2 294 -18 22 35 0 0 chrX 138043849 138043878 -24556052 + AT_rich Low_complexity Low_complexity 1 29 0 699 138 0 0 chrX 138043987 138044125 -24555805 + (GA)n Simple_repeat Simple_repeat 2 139 0 276 303 83 28 chrX 138044125 138044270 -24555660 - MIR3 SINE MIR -23 185 33 255 315 81 27 chrX 138045800 138046022 -24553908 - MIR SINE MIR -23 239 6 21 0 0 0 chrX 138051049 138051070 -24548860 + AT_rich Low_complexity Low_complexity 1 21 0 226 172 31 31 chrX 138052182 138052246 -24547684 + A-rich Low_complexity Low_complexity 4 67 0 2179 119 0 6 chrX 138052385 138052696 -24547234 + AluSx SINE Alu 3 311 -1 1835 169 13 3 chrX 138053783 138054085 -24545845 - AluJo SINE Alu -7 305 1 420 328 81 85 chrX 138054128 138054397 -24545533 + MER110-int LTR ERV1 3412 3680 -3121 2278 105 3 0 chrX 138054397 138054692 -24545238 + AluSx SINE Alu 1 296 -16 420 328 81 85 chrX 138054692 138054916 -24545014 + MER110-int LTR ERV1 3680 3903 -2898 1099 96 102 6 chrX 138055215 138055382 -24544548 + AluSc SINE Alu 113 295 -14 422 365 25 13 chrX 138055450 138055688 -24544242 + MER110-int LTR ERV1 4250 4490 -2311 1091 113 7 0 chrX 138055785 138055989 -24543941 + AluSg/x SINE Alu 134 338 0 1638 168 63 36 chrX 138056078 138056411 -24543519 - MLT1B LTR MaLR -48 342 1 811 256 20 48 chrX 138056422 138056672 -24543258 + MER110-int LTR ERV1 2220 2462 -2185 1481 111 44 26 chrX 138056672 138056836 -24543094 + MER30 DNA MER1_type 1 172 -58 2374 88 57 25 chrX 138056836 138057189 -24542741 - THE1B LTR MaLR 0 364 1 1481 111 44 26 chrX 138057189 138057250 -24542680 + MER30 DNA MER1_type 172 230 0 1227 276 103 40 chrX 138057250 138057695 -24542235 + MER110-int LTR ERV1 2455 2927 -1720 1858 122 65 0 chrX 138057698 138057996 -24541934 + AluSg1 SINE Alu 1 315 0 1310 162 0 15 chrX 138058196 138058400 -24541530 - AluJo SINE Alu -26 286 86 2309 116 0 0 chrX 138059122 138059423 -24540507 - AluSx SINE Alu -11 301 1 1910 132 9 61 chrX 138059838 138060165 -24539765 - AluSq SINE Alu -3 310 1 2584 204 25 63 chrX 138060414 138060847 -24539083 + MER90 LTR ERV1 3 451 -163 2326 116 0 0 chrX 138060847 138061157 -24538773 - AluSg SINE Alu 0 310 1 2584 204 25 63 chrX 138061157 138061171 -24538759 + MER90 LTR ERV1 451 464 -150 2879 7 0 3 chrX 138061171 138061481 -24538449 - AluYa5 SINE Alu -2 309 1 2584 204 25 63 chrX 138061481 138061666 -24538264 + MER90 LTR ERV1 464 612 -2 2106 117 26 10 chrX 138061908 138062215 -24537715 - AluSx SINE Alu 0 312 1 868 128 0 0 chrX 138062762 138062887 -24537043 + AluSg/x SINE Alu 185 309 0 180 338 86 50 chrX 138062887 138063026 -24536904 - L2 LINE L2 -467 2847 2704 455 264 19 0 chrX 138063062 138063168 -24536762 + L2 LINE L2 2636 2743 -571 4618 190 73 29 chrX 138063175 138063621 -24536309 + L1MC4 LINE L1 6772 7197 -845 1828 153 44 0 chrX 138063621 138063915 -24536015 - AluJb SINE Alu -4 308 2 4618 190 73 29 chrX 138063915 138064682 -24535248 + L1MC4 LINE L1 7197 8039 -3 933 276 37 83 chrX 138064687 138065020 -24534910 + L2 LINE L2 2734 3036 -277 1886 132 0 29 chrX 138065020 138065301 -24534629 + AluSx SINE Alu 1 273 -39 933 276 37 83 chrX 138065301 138065470 -24534460 + L2 LINE L2 3036 3211 -102 7870 28 0 1 chrX 138067343 138068321 -24531609 - L1PA4 LINE L1 -1782 4364 3388 8117 49 2 0 chrX 138068322 138070111 -24529819 + L1PA4 LINE L1 4365 6155 0 2033 98 47 9 chrX 138070310 138070628 -24529302 - LTR19B LTR ERV1 0 580 251 8149 49 6 1 chrX 138071003 138072792 -24527138 - L1PA5 LINE L1 0 6154 4361 989 31 0 0 chrX 138072795 138072922 -24527008 + L1PA5 LINE L1 4257 4383 -1763 448 191 0 0 chrX 138072922 138073011 -24526919 - ERVL LTR ERVL -4596 1168 1080 316 300 42 25 chrX 138073011 138073131 -24526799 + L2 LINE L2 3192 3313 0 490 269 116 33 chrX 138073169 138073411 -24526519 - MIR SINE MIR 0 262 1 744 209 8 0 chrX 138073455 138073589 -24526341 + AluJo SINE Alu 1 135 -177 1447 189 18 4 chrX 138073589 138073870 -24526060 + AluJo SINE Alu 1 285 -27 249 57 0 0 chrX 138073874 138073909 -24526021 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 515 344 80 17 chrX 138074411 138074699 -24525231 - L3b LINE CR1 -131 1452 1147 538 212 45 53 chrX 138074936 138075068 -24524862 - L2 LINE L2 -1 3312 3182 339 287 174 0 chrX 138075083 138075198 -24524732 - L2 LINE L2 -15 3257 3123 577 271 111 15 chrX 138075376 138075575 -24524355 - MIR SINE MIR -33 229 12 480 309 24 12 chrX 138075722 138075887 -24524043 + MIR3 SINE MIR 14 180 -28 300 147 40 13 chrX 138076590 138076665 -24523265 + CT-rich Low_complexity Low_complexity 1 77 0 215 224 35 17 chrX 138076767 138076825 -24523105 + CT-rich Low_complexity Low_complexity 3 61 0 234 190 13 25 chrX 138076912 138076991 -24522939 + CT-rich Low_complexity Low_complexity 3 80 0 2000 157 3 0 chrX 138077131 138077430 -24522500 - AluSx SINE Alu -12 300 1 258 180 0 0 chrX 138077431 138077490 -24522440 - L1PA8A LINE L1 -303 5818 5767 415 237 8 69 chrX 138077656 138077787 -24522143 - MIR SINE MIR -64 198 76 2207 101 3 19 chrX 138078518 138078826 -24521104 - AluSq SINE Alu -10 303 1 510 301 20 14 chrX 138078833 138078979 -24520951 + L2 LINE L2 3116 3262 -10 295 314 89 24 chrX 138080207 138080331 -24519599 + L2 LINE L2 3141 3272 0 1267 107 0 0 chrX 138080550 138080739 -24519191 - AluSg/x SINE Alu 0 312 124 1866 196 3 24 chrX 138081319 138081701 -24518229 - MLT1A2 LTR MaLR 0 374 1 342 45 0 0 chrX 138081811 138081855 -24518075 + (CA)n Simple_repeat Simple_repeat 2 45 0 29 0 0 0 chrX 138082261 138082290 -24517640 + AT_rich Low_complexity Low_complexity 1 29 0 750 161 0 0 chrX 138082295 138082413 -24517517 - FLAM_C SINE Alu -15 118 1 976 183 56 0 chrX 138082503 138082700 -24517230 - MER3 DNA MER1_type -1 208 1 1936 153 3 0 chrX 138082761 138083072 -24516858 + AluSq SINE Alu 1 312 0 4156 153 33 3 chrX 138083073 138083840 -24516090 - L1MB8 LINE L1 -9 6169 5380 1967 267 25 49 chrX 138084385 138085272 -24514658 + L2 LINE L2 2447 3311 -2 2890 157 0 0 chrX 138086042 138086501 -24513429 + MLT1C LTR MaLR 6 464 -3 2381 103 0 0 chrX 138086873 138087184 -24512746 - AluSq SINE Alu -2 311 1 4340 160 50 37 chrX 138087469 138087635 -24512295 + L1MB5 LINE L1 4948 5110 -1064 2430 91 0 3 chrX 138087635 138087944 -24511986 + AluSg SINE Alu 1 308 -2 4340 160 50 37 chrX 138087944 138088970 -24510960 + L1MB5 LINE L1 5110 6158 -16 575 237 107 31 chrX 138089012 138089303 -24510627 + L1ME4a LINE L1 5807 6119 -2 269 213 66 0 chrX 138089835 138089896 -24510034 - MIR SINE MIR -91 171 107 272 270 0 16 chrX 138089914 138090039 -24509891 - MIR SINE MIR -10 252 36 789 128 20 0 chrX 138090114 138090262 -24509668 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 1077 286 80 30 chrX 138090265 138091020 -24508910 - L1ME4a LINE L1 -3 6118 5327 1782 179 0 23 chrX 138091048 138091355 -24508575 + AluJb SINE Alu 1 300 -12 225 211 19 19 chrX 138092309 138092361 -24507569 - MER91B DNA MER1_type -110 80 29 557 268 0 0 chrX 138092378 138092501 -24507429 - MIR SINE MIR -115 147 25 342 0 0 0 chrX 138093994 138094032 -24505898 + (CA)n Simple_repeat Simple_repeat 2 39 0 3674 175 35 153 chrX 138094038 138094831 -24505099 - L1MC4 LINE L1 -102 7706 7018 803 199 11 40 chrX 138094831 138095007 -24504923 - AluJo SINE Alu -19 293 123 3674 175 35 153 chrX 138095007 138095297 -24504633 - L1MC4 LINE L1 -790 7018 6695 2248 114 0 0 chrX 138096128 138096427 -24503503 - AluSx SINE Alu -13 299 1 452 287 16 8 chrX 138096784 138096906 -24503024 - MIR SINE MIR -120 142 20 26 0 0 0 chrX 138097297 138097323 -24502607 + AT_rich Low_complexity Low_complexity 1 26 0 784 124 0 0 chrX 138097701 138097862 -24502068 + L1PA4 LINE L1 6011 6171 0 257 0 30 0 chrX 138097876 138097909 -24502021 + (TAA)n Simple_repeat Simple_repeat 2 35 0 543 267 76 50 chrX 138097924 138098227 -24501703 - L1MC4 LINE L1 -1913 5895 5585 292 289 25 40 chrX 138098499 138098700 -24501230 - L1MC4a LINE L1 -1900 5908 5711 1264 126 51 42 chrX 138100088 138100261 -24499669 - AluJo SINE Alu -14 298 121 261 75 0 0 chrX 138100261 138100301 -24499629 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 1264 126 51 42 chrX 138100301 138100341 -24499589 - AluJo SINE Alu -191 121 83 3251 184 51 28 chrX 138100347 138101095 -24498835 - L1MD2 LINE L1 0 6619 5855 4769 132 18 84 chrX 138101118 138102210 -24497720 - L1MA2 LINE L1 -4 6300 5285 1469 67 0 0 chrX 138102235 138102414 -24497516 - AluY SINE Alu -14 297 119 7808 18 3 0 chrX 138102421 138103486 -24496444 - L1PA2 LINE L1 0 6155 5090 1869 13 0 0 chrX 138103486 138103710 -24496220 + L1PA2 LINE L1 4872 5095 -1051 1030 73 0 0 chrX 138103715 138103838 -24496092 - AluY SINE Alu -188 123 1 8431 238 62 17 chrX 138103841 138103900 -24496030 - L1MD2 LINE L1 -875 5531 5476 2002 136 3 20 chrX 138103900 138104233 -24495697 - AluSx SINE Alu 0 312 1 8431 238 62 17 chrX 138104233 138104487 -24495443 - L1MD2 LINE L1 -930 5476 5235 696 56 0 0 chrX 138104487 138104576 -24495354 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 8431 238 62 17 chrX 138104576 138107176 -24492754 - L1MD2 LINE L1 -1171 5235 2486 3247 228 63 22 chrX 138107181 138107383 -24492547 - L1MD2 LINE L1 -4099 2307 2115 1616 172 13 53 chrX 138107383 138107685 -24492245 - AluJo SINE Alu -22 290 1 3247 228 63 22 chrX 138107685 138108577 -24491353 - L1MD2 LINE L1 -4291 2115 1168 1966 129 35 0 chrX 138108578 138108864 -24491066 - AluSx SINE Alu -16 296 1 539 107 25 8 chrX 138108867 138108973 -24490957 - L1PA10 LINE L1 -3 6163 6058 * 2657 244 38 37 chrX 138108972 138110243 -24489687 - L1MD2 LINE L1 -5234 1175 7 320 205 217 0 chrX 138111192 138111275 -24488655 + MIR3 SINE MIR 102 202 -6 236 349 37 42 chrX 138112450 138112639 -24487291 + L2 LINE L2 2303 2490 -824 1460 317 66 56 chrX 138112746 138113296 -24486634 - L2 LINE L2 -13 3259 2716 387 0 0 0 chrX 138113296 138113339 -24486591 + (TG)n Simple_repeat Simple_repeat 1 43 0 1460 317 66 56 chrX 138113339 138114044 -24485886 - L2 LINE L2 -556 2716 1996 823 286 23 23 chrX 138114143 138114360 -24485570 - MIR SINE MIR -6 256 40 398 239 15 8 chrX 138114361 138114491 -24485439 - L1M4 LINE L1 -2615 3531 3401 180 158 0 0 chrX 138121986 138122024 -24477906 + (TA)n Simple_repeat Simple_repeat 2 39 0 495 287 42 84 chrX 138122493 138122800 -24477130 - L1ME4a LINE L1 -112 6009 5729 836 158 0 23 chrX 138122800 138122933 -24476997 + FLAM_C SINE Alu 1 130 -3 495 287 42 84 chrX 138122933 138123123 -24476807 - L1ME4a LINE L1 -392 5729 5533 1944 181 39 18 chrX 138123211 138123593 -24476337 - MLT1B LTR MaLR 0 390 1 238 271 0 0 chrX 138124056 138124115 -24475815 + MIR3 SINE MIR 149 207 -1 921 149 126 42 chrX 138124634 138124848 -24475082 - MLT1A1 LTR MaLR 0 365 134 2576 191 62 21 chrX 138124848 138125383 -24474547 - MER21A LTR ERV1 0 931 375 1472 119 31 35 chrX 138125387 138125639 -24474291 - MER21A LTR ERV1 -667 264 12 285 51 0 0 chrX 138125639 138125678 -24474252 + (CA)n Simple_repeat Simple_repeat 2 40 0 789 165 8 0 chrX 138125690 138125823 -24474107 - MLT1A1 LTR MaLR -227 138 5 289 329 8 5 chrX 138126091 138126283 -24473647 - L1MC4a LINE L1 -340 5826 5715 1820 163 3 16 chrX 138127132 138127438 -24472492 + AluJo SINE Alu 1 302 -10 755 238 138 0 chrX 138127592 138127781 -24472149 + MIR SINE MIR 38 252 -10 577 281 12 41 chrX 138127806 138127977 -24471953 + MIR SINE MIR 32 197 -65 463 227 50 8 chrX 138129077 138129196 -24470734 + MIR SINE MIR 84 207 -55 209 135 0 27 chrX 138129218 138129255 -24470675 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1756 191 3 0 chrX 138130877 138131176 -24468754 + AluJo SINE Alu 1 300 -12 667 205 0 0 chrX 138131444 138131566 -24468364 + FLAM_C SINE Alu 2 123 -20 228 150 17 33 chrX 138131748 138131808 -24468122 + (TAA)n Simple_repeat Simple_repeat 3 61 0 202 347 14 0 chrX 138132585 138132657 -24467273 - L2 LINE L2 -896 2418 2346 310 316 130 42 chrX 138132672 138133125 -24466805 + L2 LINE L2 2471 2963 -351 2257 91 0 3 chrX 138134240 138134527 -24465403 - AluSq SINE Alu -27 286 1 31 44 0 0 chrX 138134545 138134590 -24465340 + AT_rich Low_complexity Low_complexity 1 45 0 670 218 24 48 chrX 138134759 138135007 -24464923 - L1MC4a LINE L1 -1866 5942 5701 514 294 80 36 chrX 138135255 138135531 -24464399 - L1MC4a LINE L1 -2095 5713 5426 1239 122 42 25 chrX 138135543 138135646 -24464284 - L1MB7 LINE L1 -19 6165 6063 1977 192 42 12 chrX 138135646 138136178 -24463752 - L1MB7 LINE L1 -317 5867 5467 267 198 0 12 chrX 138136203 138136289 -24463641 - L1MB7 LINE L1 -2849 3297 3213 5935 126 16 6 chrX 138136289 138137263 -24462667 - L1MC1 LINE L1 -7 6326 5343 1504 145 4 8 chrX 138137266 138137514 -24462416 + MLT1A1 LTR MaLR 3 249 -116 774 201 87 112 chrX 138138785 138138958 -24460972 + MLT1H1 LTR MaLR 75 251 -304 1492 174 124 28 chrX 138138958 138139354 -24460576 + MER63B DNA MER1_type 1 434 -2 774 201 87 112 chrX 138139354 138139673 -24460257 + MLT1H1 LTR MaLR 251 555 0 226 264 0 0 chrX 138140377 138140430 -24459500 + A-rich Low_complexity Low_complexity 1 53 0 783 255 15 37 chrX 138140896 138141221 -24458709 + L1MC5 LINE L1 7614 7931 -30 23 0 0 0 chrX 138141988 138142011 -24457919 + AT_rich Low_complexity Low_complexity 1 23 0 1739 160 42 3 chrX 138142012 138142343 -24457587 - MER2 DNA MER2_type 0 344 1 1117 293 42 57 chrX 138142523 138143001 -24456929 + L2 LINE L2 2347 2817 -497 507 320 44 11 chrX 138143002 138143183 -24456747 - MIR SINE MIR -57 205 19 436 250 129 8 chrX 138143777 138143909 -24456021 - MIR SINE MIR -111 151 4 1985 182 28 90 chrX 138143973 138144101 -24455829 - L1ME2 LINE L1 0 6662 6528 1763 159 14 7 chrX 138144101 138144378 -24455552 + AluJb SINE Alu 1 279 -33 1985 182 28 90 chrX 138144378 138144836 -24455094 - L1ME2 LINE L1 -134 6528 6116 1972 144 0 0 chrX 138144836 138145146 -24454784 - AluSx SINE Alu 0 310 1 1985 182 28 90 chrX 138145146 138145200 -24454730 - L1ME2 LINE L1 -546 6116 6060 432 189 27 9 chrX 138145202 138145313 -24454617 - L1ME2 LINE L1 -929 5902 5790 * 6217 150 13 9 chrX 138145302 138147044 -24452886 - L1PB2 LINE L1 0 6151 4395 675 0 0 0 chrX 138147044 138147119 -24452811 + (TATTG)n Simple_repeat Simple_repeat 2 76 0 6217 150 13 9 chrX 138147119 138147430 -24452500 - L1PB2 LINE L1 -1756 4395 4087 4809 236 52 45 chrX 138147429 138147584 -24452346 - L1ME2 LINE L1 -845 5799 5647 * 1860 146 0 43 chrX 138147584 138147906 -24452024 - AluJo SINE Alu 0 312 5 4809 236 52 45 chrX 138147906 138149728 -24450202 - L1ME2 LINE L1 -997 5647 3809 467 112 34 45 chrX 138149728 138149817 -24450113 - MER58 DNA MER1_type 0 2420 128 601 216 6 11 chrX 138149863 138150044 -24449886 + CT-rich Low_complexity Low_complexity 1 180 0 1493 150 20 61 chrX 138150086 138150432 -24449498 - L1MB3 LINE L1 -93 6090 5759 752 154 13 19 chrX 138150432 138150587 -24449343 + L1MB8 LINE L1 6024 6178 0 319 262 36 0 chrX 138150619 138150703 -24449227 - MER58 DNA MER1_type -128 87 1 1321 204 56 75 chrX 138150703 138150928 -24449002 - L1ME2 LINE L1 -2828 3816 3588 180 0 0 0 chrX 138150928 138150948 -24448982 + (CTG)n Simple_repeat Simple_repeat 3 22 0 1321 204 56 75 chrX 138150948 138150963 -24448967 - L1ME2 LINE L1 -3056 3588 3574 1815 155 7 21 chrX 138150963 138151434 -24448496 - AluJo SINE Alu 0 467 1 1321 204 56 75 chrX 138151434 138151680 -24448250 - L1ME2 LINE L1 -3070 3574 3338 1484 174 98 11 chrX 138151680 138151945 -24447985 - AluJb SINE Alu -24 288 1 1321 204 56 75 chrX 138151945 138152042 -24447888 - L1ME2 LINE L1 -3306 3338 3241 3050 64 14 93 chrX 138152042 138152524 -24447406 - MLT2A1 LTR ERVL 0 444 1 7460 59 7 0 chrX 138152524 138153487 -24446443 - HERVL-A1 LTR ERVL 0 5654 4685 2644 250 50 35 chrX 138153487 138154230 -24445700 - L1ME2 LINE L1 -3399 3245 2515 642 30 10 40 chrX 138154230 138154329 -24445601 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 1702 139 41 4 chrX 138154331 138154475 -24445455 - AluSx SINE Alu -35 277 140 183 100 0 0 chrX 138154475 138154505 -24445425 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1702 139 41 4 chrX 138154505 138154627 -24445303 - AluSx SINE Alu -172 140 1 2644 250 50 35 chrX 138154627 138155639 -24444291 - L1ME2 LINE L1 -4129 2515 1348 534 225 0 60 chrX 138155640 138155822 -24444108 + L1MA9 LINE L1 6104 6274 -38 1845 266 77 27 chrX 138155859 138156665 -24443265 - L1ME2 LINE L1 -5205 1429 584 328 305 122 0 chrX 138156992 138157123 -24442807 + MIR SINE MIR 58 204 -58 397 260 10 0 chrX 138157123 138157227 -24442703 - MER94 DNA DNA -1 133 29 1593 189 116 3 chrX 138157278 138157633 -24442297 - MSTD LTR MaLR 0 396 2 207 254 0 14 chrX 138157940 138158011 -24441919 + (TG)n Simple_repeat Simple_repeat 1 70 0 215 250 0 0 chrX 138158483 138158527 -24441403 - L3 LINE CR1 -7 1570 1527 790 291 36 0 chrX 138158791 138159014 -24440916 + MIR SINE MIR 2 232 -30 537 267 22 7 chrX 138159188 138159323 -24440607 - MIR SINE MIR -108 154 18 23 0 0 0 chrX 138159672 138159695 -24440235 + AT_rich Low_complexity Low_complexity 1 23 0 237 246 0 167 chrX 138159969 138160095 -24439835 - MIR3 SINE MIR -21 187 83 237 108 0 0 chrX 138160095 138160132 -24439798 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 508 294 16 24 chrX 138160133 138160259 -24439671 - L2 LINE L2 -14 3258 3134 189 0 0 0 chrX 138160456 138160477 -24439453 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1905 156 0 3 chrX 138160480 138160768 -24439162 - AluJo SINE Alu -25 287 1 338 306 70 61 chrX 138160846 138161075 -24438855 - L2 LINE L2 -126 3146 2916 245 226 60 48 chrX 138161891 138161975 -24437955 + MIR SINE MIR 58 142 -120 267 307 94 42 chrX 138162172 138162364 -24437566 + L3b LINE CR1 1280 1481 -102 231 195 0 0 chrX 138163806 138163847 -24436083 + (TG)n Simple_repeat Simple_repeat 2 42 0 361 324 21 28 chrX 138164501 138164646 -24435284 + MIR3 SINE MIR 61 204 -4 655 284 59 54 chrX 138166136 138166559 -24433371 - L1ME4a LINE L1 -93 6028 5604 341 86 17 17 chrX 138166769 138166780 -24433150 - Alu SINE Alu 0 300 290 306 73 0 0 chrX 138166780 138166821 -24433109 + (TA)n Simple_repeat Simple_repeat 1 41 0 341 86 17 17 chrX 138166821 138166867 -24433063 - Alu SINE Alu -9 291 243 709 164 0 16 chrX 138167005 138167127 -24432803 + AluJb SINE Alu 180 299 -13 377 277 36 18 chrX 138167141 138167253 -24432677 + MIR3 SINE MIR 44 157 -51 1364 130 17 78 chrX 138167256 138167307 -24432623 - MER20 DNA MER1_type 0 219 166 2116 114 7 7 chrX 138167307 138167604 -24432326 - AluSc SINE Alu -12 297 1 1364 130 17 78 chrX 138167604 138167783 -24432147 - MER20 DNA MER1_type -53 166 3 216 0 0 0 chrX 138168007 138168031 -24431899 + (T)n Simple_repeat Simple_repeat 1 24 0 3753 213 27 42 chrX 138168716 138169778 -24430152 + L1ME3 LINE L1 5072 6132 -30 21 36 0 0 chrX 138169819 138169847 -24430083 + AT_rich Low_complexity Low_complexity 1 28 0 336 295 126 0 chrX 138170826 138170921 -24429009 - L2 LINE L2 -13 3259 3153 1119 242 33 8 chrX 138170938 138171182 -24428748 - MIR SINE MIR -3 259 10 2325 218 53 14 chrX 138172066 138172571 -24427359 - REP3 LTR ERV -37 525 1 336 65 0 0 chrX 138172694 138172740 -24427190 + MADE1 DNA Mariner 35 80 0 491 225 58 7 chrX 138174009 138174147 -24425783 + MIR SINE MIR 81 225 -37 381 281 75 14 chrX 138175100 138175246 -24424684 - L1MC4a LINE L1 -1837 5971 5817 368 279 88 20 chrX 138176004 138176151 -24423779 + MIR3 SINE MIR 20 176 -32 2156 114 7 7 chrX 138177147 138177445 -24422485 + AluSx SINE Alu 1 298 -14 415 217 0 22 chrX 138177756 138177848 -24422082 - MER103 DNA DNA 0 166 77 4499 124 6 3 chrX 138178724 138179367 -24420563 - L1PA16 LINE L1 0 6166 5522 369 0 0 0 chrX 138179564 138179605 -24420325 + (CA)n Simple_repeat Simple_repeat 2 42 0 310 307 26 9 chrX 138180279 138180393 -24419537 - L3 LINE CR1 -93 1484 1369 484 254 17 58 chrX 138180402 138180575 -24419355 + MIR SINE MIR 3 168 -94 449 301 133 77 chrX 138180621 138181036 -24418894 - L3 LINE CR1 -229 1348 911 1957 151 25 0 chrX 138181580 138181865 -24418065 - AluSx SINE Alu -20 292 1 2296 207 118 4 chrX 138182055 138182539 -24417391 - MLT1F LTR MaLR 0 542 4 203 210 0 48 chrX 138183146 138183208 -24416722 - L2 LINE L2 -4 3268 3210 3628 20 0 0 chrX 138183604 138183998 -24415932 - L1PA2 LINE L1 -1 6154 5761 395 19 0 0 chrX 138183998 138184051 -24415879 + L1P LINE L1 5263 5315 -840 2528 58 3 3 chrX 138184244 138184556 -24415374 - AluSp SINE Alu -1 312 1 279 188 26 12 chrX 138184567 138184653 -24415277 - L1ME1 LINE L1 -2 6332 6091 433 309 0 49 chrX 138185140 138185302 -24414628 - MIR3 SINE MIR -11 197 44 242 205 0 0 chrX 138185311 138185350 -24414580 - MIR SINE MIR -137 71 33 585 318 28 6 chrX 138185799 138185975 -24413955 + MIR3 SINE MIR 4 183 -25 757 103 0 26 chrX 138187072 138187188 -24412742 + L1PB1 LINE L1 6039 6151 0 207 69 0 0 chrX 138188261 138188290 -24411640 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 307 242 0 0 chrX 138188386 138188452 -24411478 + MIR SINE MIR 28 93 -169 285 89 0 0 chrX 138188853 138188898 -24411032 + (TG)n Simple_repeat Simple_repeat 1 45 0 187 321 0 0 chrX 138190165 138190218 -24409712 + L2 LINE L2 3261 3313 0 366 301 0 0 chrX 138190313 138190396 -24409534 + L2 LINE L2 3187 3269 -44 4444 82 26 2 chrX 138190540 138191126 -24408804 + L1PA13 LINE L1 5564 6163 0 6131 82 60 0 chrX 138191640 138192419 -24407511 + LTR12 LTR ERV1 1 826 0 187 282 56 42 chrX 138194014 138194085 -24405845 - L2 LINE L2 -25 3247 3176 1862 207 83 91 chrX 138194362 138194844 -24405086 + L1ME3 LINE L1 5528 6005 -157 2293 104 0 3 chrX 138194844 138195152 -24404778 + AluSg SINE Alu 1 307 -3 1862 207 83 91 chrX 138195152 138195308 -24404622 + L1ME3 LINE L1 6005 6161 -1 522 293 95 15 chrX 138195341 138195850 -24404080 + L1MC4a LINE L1 5573 6116 -5 767 276 73 26 chrX 138195934 138196278 -24403652 - L2 LINE L2 -946 2368 2009 526 294 108 5 chrX 138196689 138196893 -24403037 - L2 LINE L2 -1856 1458 1234 263 376 35 0 chrX 138197247 138197444 -24402486 + L1ME2 LINE L1 5699 5902 -262 4133 128 45 37 chrX 138197894 138198605 -24401325 - L1MA9 LINE L1 -2 6310 5594 420 243 171 9 chrX 138198611 138198722 -24401208 - MIR SINE MIR -60 148 20 2197 123 0 16 chrX 138198976 138199293 -24400637 + AluSx SINE Alu 1 312 0 2102 142 17 9 chrX 138199612 138199957 -24399973 - L1MA10 LINE L1 -8 6326 5979 202 315 46 37 chrX 138200167 138200275 -24399655 + MIR SINE MIR 6 114 -148 939 249 41 62 chrX 138200276 138200617 -24399313 - L2 LINE L2 -4 3309 2976 384 287 39 0 chrX 138200654 138200783 -24399147 - L2 LINE L2 -734 2580 2447 315 183 14 0 chrX 138200855 138200926 -24399004 - L1MA7 LINE L1 -4 6287 6216 1846 195 46 39 chrX 138200943 138201008 -24398922 - L2 LINE L2 -937 2377 2314 2018 153 0 3 chrX 138201008 138201315 -24398615 + AluSx SINE Alu 1 306 -6 1846 195 46 39 chrX 138201315 138201680 -24398250 - L2 LINE L2 -1000 2314 1944 330 145 29 29 chrX 138201683 138201752 -24398178 + L2 LINE L2 3203 3271 -1 252 289 67 47 chrX 138201757 138201863 -24398067 - MIR SINE MIR -102 106 1 579 249 109 0 chrX 138201933 138202098 -24397832 - L2 LINE L2 -1406 1908 1726 203 256 8 144 chrX 138202106 138202231 -24397699 + MIR SINE MIR 155 262 0 5936 104 15 13 chrX 138203013 138203373 -24396557 - L1PB3 LINE L1 0 6154 5796 288 0 0 0 chrX 138203373 138203405 -24396525 + (TG)n Simple_repeat Simple_repeat 2 33 0 5936 104 15 13 chrX 138203405 138203919 -24396011 - L1PB3 LINE L1 -358 5796 5278 695 317 256 10 chrX 138203965 138204862 -24395068 + L2 LINE L2 1494 2611 -703 2261 100 10 10 chrX 138206145 138206456 -24393474 + AluSx SINE Alu 1 311 -1 476 262 17 23 chrX 138206665 138206812 -24393118 - MER5A DNA MER1_type -40 149 4 513 306 43 54 chrX 138206861 138207047 -24392883 + MER91A DNA MER1_type 1 184 -12 272 274 95 36 chrX 138207051 138207135 -24392795 + MER91A DNA MER1_type 108 196 0 334 275 17 75 chrX 138207324 138207444 -24392486 + MIR SINE MIR 76 188 -74 324 0 0 0 chrX 138209244 138209280 -24390650 + (A)n Simple_repeat Simple_repeat 1 36 0 563 288 9 160 chrX 138209524 138209961 -24389969 - L2 LINE L2 0 3272 2902 30758 31 16 1 chrX 138210823 138216856 -24383074 - L1PA2 LINE L1 0 6155 1 840 279 18 9 chrX 138216911 138217133 -24382797 + MIR SINE MIR 36 259 -3 1620 217 32 215 chrX 138218377 138219046 -24380884 - L2 LINE L2 -1091 2223 1433 2928 96 0 6 chrX 138219046 138219412 -24380518 - THE1B LTR MaLR 0 364 1 1620 217 32 215 chrX 138219412 138220770 -24379160 - L2 LINE L2 -1881 1433 567 1092 253 95 78 chrX 138220773 138221259 -24378671 - L2 LINE L2 -1898 1416 923 369 198 0 0 chrX 138221415 138221496 -24378434 + (TA)n Simple_repeat Simple_repeat 1 81 0 229 261 0 43 chrX 138221497 138221589 -24378341 - L1MC4 LINE L1 -1339 6703 6616 226 164 55 0 chrX 138221581 138221636 -24378294 - L1MCa LINE L1 -4363 2063 2006 * 242 234 0 43 chrX 138221607 138221701 -24378229 - L1MC4 LINE L1 -1339 6983 6894 399 226 0 0 chrX 138221703 138221805 -24378125 + (TA)n Simple_repeat Simple_repeat 2 103 0 243 0 0 0 chrX 138221805 138221832 -24378098 + (CA)n Simple_repeat Simple_repeat 2 28 0 2121 101 7 0 chrX 138221847 138222125 -24377805 - AluSx SINE Alu -32 280 1 198 0 0 0 chrX 138222525 138222547 -24377383 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2476 81 0 0 chrX 138222941 138223251 -24376679 + AluY SINE Alu 1 310 -1 428 295 198 0 chrX 138223339 138223556 -24376374 + MIR SINE MIR 3 262 0 * 645 250 0 14 chrX 138223554 138223694 -24376236 + L2 LINE L2 3176 3313 0 850 188 6 24 chrX 138223798 138223968 -24375962 + MIR SINE MIR 37 203 -59 213 163 23 23 chrX 138224324 138224367 -24375563 + MIR SINE MIR 217 259 -3 1126 174 87 5 chrX 138224418 138224625 -24375305 - MER58A DNA MER1_type 0 224 1 389 320 22 73 chrX 138225146 138225324 -24374606 - L2 LINE L2 0 3272 3104 1368 263 125 18 chrX 138226263 138226782 -24373148 - L1MC4 LINE L1 -724 5450 5278 1645 173 13 39 chrX 138226867 138227173 -24372757 - AluJo SINE Alu -14 298 1 242 401 0 28 chrX 138227469 138227611 -24372319 - L2 LINE L2 -10 3262 3125 292 170 57 0 chrX 138227729 138227782 -24372148 - MER58 DNA MER1_type -1 2419 2364 1078 182 50 0 chrX 138227803 138228001 -24371929 - MER58 DNA MER1_type -2212 208 1 214 186 72 113 chrX 138228450 138228547 -24371383 - MIR SINE MIR -51 211 119 219 355 0 0 chrX 138228667 138228743 -24371187 - MIR SINE MIR -13 249 174 706 276 58 16 chrX 138228767 138229010 -24370920 + MIR SINE MIR 10 262 0 4275 212 64 30 chrX 138229124 138230154 -24369776 - L1MD2 LINE L1 -49 6704 5711 2112 188 59 9 chrX 138230154 138230595 -24369335 + MLT1C LTR MaLR 1 463 -4 4275 212 64 30 chrX 138230595 138230951 -24368979 - L1MD2 LINE L1 -1042 5711 5369 2244 96 24 0 chrX 138230951 138231243 -24368687 + AluSx SINE Alu 1 299 -13 1904 114 4 8 chrX 138231244 138231508 -24368422 + AluSq SINE Alu 30 292 -21 4275 212 64 30 chrX 138231508 138232026 -24367904 - L1MD2 LINE L1 -1383 5370 4730 790 148 99 14 chrX 138232074 138232115 -24367815 + Tigger7 DNA MER2_type 2332 2368 -119 186 43 0 0 chrX 138232115 138232138 -24367792 + (TATG)n Simple_repeat Simple_repeat 2 24 0 790 148 99 14 chrX 138232138 138232238 -24367692 + Tigger7 DNA MER2_type 2368 2485 -2 3138 228 43 74 chrX 138232255 138232501 -24367429 - L1MD2 LINE L1 -1827 4713 4461 1340 111 183 38 chrX 138232501 138232763 -24367167 - AluSg1 SINE Alu -9 300 1 3467 92 2 2 chrX 138232763 138233210 -24366720 - L1PA13 LINE L1 -9 6154 5708 3138 228 43 74 chrX 138233210 138233728 -24366202 - L1MD2 LINE L1 -2078 4462 3994 1974 135 21 0 chrX 138233728 138234017 -24365913 + AluSx SINE Alu 1 295 -17 3138 228 43 74 chrX 138234017 138234408 -24365522 - L1MD2 LINE L1 -2546 3994 3592 3176 218 74 32 chrX 138234416 138235379 -24364551 - L1MD2 LINE L1 -4704 1836 834 1186 268 59 55 chrX 138235549 138236017 -24363913 - L1MD2 LINE L1 -5980 560 95 401 0 20 0 chrX 138236017 138236066 -24363864 + (TG)n Simple_repeat Simple_repeat 2 51 0 1559 187 0 4 chrX 138236066 138236333 -24363597 - AluJo SINE Alu -26 286 21 1186 268 59 55 chrX 138236333 138236404 -24363526 - L1MD2 LINE L1 -6444 96 18 790 141 0 25 chrX 138236405 138236526 -24363404 + FLAM_C SINE Alu 15 132 -11 275 215 0 31 chrX 138236718 138236783 -24363147 - MIR SINE MIR 0 262 200 1574 213 47 3 chrX 138236800 138237120 -24362810 + MER46C DNA MER2_type 2 335 -3 390 296 0 0 chrX 138237665 138237763 -24362167 - L2 LINE L2 0 3272 3175 621 286 6 17 chrX 138238159 138238334 -24361596 + MER5B DNA MER1_type 6 178 0 254 235 86 49 chrX 138238420 138238501 -24361429 - MIR SINE MIR -4 258 175 245 11 0 213 chrX 138238616 138238710 -24361220 + (TA)n Simple_repeat Simple_repeat 2 75 0 518 231 60 17 chrX 138238839 138238956 -24360974 - MIR SINE MIR -80 182 61 1486 185 105 40 chrX 138238988 138239339 -24360591 + MLT1A2 LTR MaLR 1 374 0 219 337 84 0 chrX 138239339 138239434 -24360496 + L2 LINE L2 3166 3268 -4 2301 80 7 0 chrX 138239737 138240025 -24359905 - AluSp SINE Alu -23 290 1 286 306 102 0 chrX 138241423 138241580 -24358350 - HERVL74 LTR ERVL -4446 1239 1067 2789 134 24 24 chrX 138242310 138242735 -24357195 + MSTB LTR MaLR 2 426 0 790 182 4 12 chrX 138243549 138243809 -24356121 + GA-rich Low_complexity Low_complexity 1 257 0 201 129 0 0 chrX 138243812 138243843 -24356087 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 646 153 99 0 chrX 138244495 138244606 -24355324 - MER45A DNA AcHobo 0 178 57 * 779 234 0 0 chrX 138244590 138244727 -24355203 - MER45A DNA AcHobo -40 138 2 1273 197 47 17 chrX 138249060 138249239 -24350691 + L1MA4 LINE L1 5990 6183 -117 2137 121 0 13 chrX 138249239 138249545 -24350385 + AluSx SINE Alu 1 302 -10 1273 197 47 17 chrX 138249545 138249665 -24350265 + L1MA4 LINE L1 6183 6298 -2 242 299 12 19 chrX 138249855 138249941 -24349989 + MIR SINE MIR 9 91 -117 2598 156 48 2 chrX 138249941 138250378 -24349552 - LTR32 LTR ERVL 0 471 15 482 308 41 12 chrX 138250378 138250550 -24349380 + MIR SINE MIR 86 262 0 276 204 352 0 chrX 138252251 138252359 -24347571 + MIR SINE MIR 6 151 -111 2075 133 0 16 chrX 138252634 138252951 -24346979 - AluSx SINE Alu 0 312 1 999 178 0 22 chrX 138252951 138253131 -24346799 - FRAM SINE Alu -4 172 1 1723 239 61 26 chrX 138253722 138254262 -24345668 - L1ME1 LINE L1 -5 6161 5603 1208 151 16 0 chrX 138255402 138255587 -24344343 + MER5A DNA MER1_type 2 189 0 592 257 29 18 chrX 138256214 138256385 -24343545 + MIR3 SINE MIR 36 208 0 2516 72 0 7 chrX 138257664 138257969 -24341961 + AluSx SINE Alu 1 303 -9 252 318 0 0 chrX 138260583 138260646 -24339284 + L3 LINE CR1 1512 1574 -3 669 203 120 0 chrX 138261145 138261278 -24338652 + MIR SINE MIR 2 150 -112 203 340 20 10 chrX 138261473 138261573 -24338357 - MIR3 SINE MIR -7 201 101 291 121 0 0 chrX 138262436 138262494 -24337436 + (T)n Simple_repeat Simple_repeat 1 58 0 21 36 0 0 chrX 138263962 138263990 -24335940 + AT_rich Low_complexity Low_complexity 1 28 0 719 177 105 0 chrX 138266618 138266799 -24333131 + Charlie1 DNA MER1_type 2562 2761 0 334 277 0 0 chrX 138266853 138266936 -24332994 + L2 LINE L2 3176 3258 -14 246 62 0 0 chrX 138267897 138267929 -24332001 + (CGG)n Simple_repeat Simple_repeat 1 32 0 27 49 0 0 chrX 138268102 138268143 -24331787 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 138270681 138270703 -24329227 + AT_rich Low_complexity Low_complexity 1 22 0 912 207 6 11 chrX 138271756 138271935 -24327995 + MER58A DNA MER1_type 47 224 0 294 308 67 10 chrX 138272852 138272956 -24326974 - MIR3 SINE MIR -7 201 92 * 667 310 56 4 chrX 138272954 138273186 -24326744 - MIR SINE MIR -3 259 16 28 29 0 0 chrX 138273215 138273250 -24326680 + AT_rich Low_complexity Low_complexity 1 35 0 2090 112 0 3 chrX 138274415 138274725 -24325205 - AluSx SINE Alu 0 309 1 1034 132 31 13 chrX 138276181 138276369 -24323561 + AluSg/x SINE Alu 118 308 0 601 254 149 0 chrX 138276904 138277085 -24322845 + L2 LINE L2 3105 3312 -1 839 165 188 0 chrX 138277406 138277582 -24322348 - MER3 DNA MER1_type 0 209 1 1238 117 0 6 chrX 138277965 138278136 -24321794 + AluSg/x SINE Alu 133 302 -10 23 0 0 0 chrX 138278618 138278641 -24321289 + AT_rich Low_complexity Low_complexity 1 23 0 737 252 52 19 chrX 138280171 138280381 -24319549 - MIR SINE MIR -44 218 2 29 28 0 0 chrX 138280886 138280922 -24319008 + AT_rich Low_complexity Low_complexity 1 36 0 216 179 0 0 chrX 138284158 138284197 -24315733 + (TG)n Simple_repeat Simple_repeat 1 39 0 440 83 0 0 chrX 138286278 138286338 -24313592 + L2 LINE L2 3254 3313 0 209 204 0 37 chrX 138286391 138286445 -24313485 + L2 LINE L2 659 710 -2604 916 302 143 35 chrX 138286446 138287268 -24312662 + L2 LINE L2 2384 3283 -30 265 242 168 11 chrX 138288042 138288137 -24311793 - L2 LINE L2 -2619 695 586 1532 267 82 25 chrX 138288258 138288976 -24310954 - L2 LINE L2 -35 3278 2511 281 298 76 23 chrX 138289420 138289551 -24310379 - Tigger6b DNA MER2_type -735 862 725 2663 252 35 82 chrX 138289698 138290652 -24309278 - L2 LINE L2 -548 2766 1883 2192 114 7 3 chrX 138290652 138290950 -24308980 + AluSx SINE Alu 7 305 -7 2663 252 35 82 chrX 138290950 138291242 -24308688 - L2 LINE L2 -1431 1883 1579 891 190 86 0 chrX 138291709 138291883 -24308047 - MER5A DNA MER1_type 0 189 1 260 128 64 77 chrX 138292105 138292183 -24307747 - L1MA10 LINE L1 -133 6201 6125 * 439 153 120 35 chrX 138292182 138292308 -24307622 + L1MA9 LINE L1 6127 6254 -58 2486 67 0 13 chrX 138292309 138292625 -24307305 + AluSx SINE Alu 1 312 0 806 159 0 0 chrX 138292913 138293039 -24306891 - L1MA9 LINE L1 -173 6139 6014 2571 48 0 13 chrX 138293291 138293606 -24306324 + AluY SINE Alu 1 311 0 26 0 0 0 chrX 138293964 138293990 -24305940 + AT_rich Low_complexity Low_complexity 1 26 0 735 283 74 39 chrX 138294091 138294711 -24305219 - L1P4 LINE L1 -559 5607 4998 1589 258 161 20 chrX 138294735 138294805 -24305125 - L2 LINE L2 -922 2392 2333 2692 45 3 0 chrX 138294805 138295117 -24304813 + AluSp SINE Alu 1 313 0 1589 258 161 20 chrX 138295117 138295737 -24304193 - L2 LINE L2 -981 2333 1605 497 322 4 30 chrX 138295964 138296231 -24303699 - HAL1 LINE L1 -1399 1108 849 538 237 58 7 chrX 138296957 138297096 -24302834 + MIR SINE MIR 90 235 -27 182 139 0 83 chrX 138297335 138297371 -24302559 - L3 LINE CR1 -16 1561 1529 * 445 314 70 0 chrX 138297343 138297499 -24302431 - MIR3 SINE MIR -25 183 17 1281 304 52 86 chrX 138297557 138298648 -24301282 + L2 LINE L2 1469 2498 -774 1895 163 0 19 chrX 138298648 138298955 -24300975 - AluJo SINE Alu -11 301 1 1281 304 52 86 chrX 138298955 138299540 -24300390 + L2 LINE L2 2498 3102 -170 727 298 73 26 chrX 138299667 138299814 -24300116 - L2 LINE L2 -115 3198 3059 1460 67 63 88 chrX 138299814 138299861 -24300069 + L1PA15 LINE L1 5929 5976 -189 2439 97 0 0 chrX 138299861 138300170 -24299760 + AluSg SINE Alu 2 310 0 1460 67 63 88 chrX 138300170 138300360 -24299570 + L1PA15 LINE L1 5976 6160 -5 727 298 73 26 chrX 138300360 138300618 -24299312 - L2 LINE L2 -254 3059 2782 1827 122 60 73 chrX 138300635 138300753 -24299177 - L1MA4A LINE L1 0 6304 6186 1886 149 23 3 chrX 138300753 138300776 -24299154 - AluJb SINE Alu -4 308 287 420 20 0 0 chrX 138300776 138300825 -24299105 + (TG)n Simple_repeat Simple_repeat 2 50 0 1886 149 23 3 chrX 138300825 138301103 -24298827 - AluJb SINE Alu -25 287 1 1827 122 60 73 chrX 138301103 138301394 -24298536 - L1MA4A LINE L1 -118 6186 5903 479 310 15 20 chrX 138301395 138301598 -24298332 - L2 LINE L2 -612 2702 2501 1320 259 128 25 chrX 138301603 138302134 -24297796 + L2 LINE L2 2733 3309 -4 190 267 215 30 chrX 138302111 138302246 -24297684 - L2 LINE L2 -796 2518 2359 * 1023 35 28 0 chrX 138303128 138303271 -24296659 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 595 270 107 19 chrX 138304375 138304590 -24295340 + MIR SINE MIR 15 248 -14 2883 190 28 25 chrX 138304697 138305301 -24294629 - L1ME2 LINE L1 0 6164 5559 211 350 100 0 chrX 138305409 138305489 -24294441 - L2 LINE L2 -47 3225 3138 307 337 0 0 chrX 138305760 138305843 -24294087 - L2 LINE L2 -9 3304 3222 751 309 96 16 chrX 138306972 138307409 -24292521 + L2 LINE L2 2842 3313 0 22 35 0 0 chrX 138307552 138307581 -24292349 + AT_rich Low_complexity Low_complexity 1 29 0 1833 183 0 10 chrX 138307642 138307943 -24291987 + AluJb SINE Alu 1 298 -14 1840 176 0 19 chrX 138308108 138308420 -24291510 - AluJo SINE Alu -6 306 1 180 111 0 0 chrX 138308422 138308449 -24291481 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1340 130 80 42 chrX 138308756 138309018 -24290912 + ORSL DNA AcHobo 3 274 -1 351 274 39 0 chrX 138309717 138309819 -24290111 + L2 LINE L2 1037 1142 -2172 4204 240 71 18 chrX 138309819 138311313 -24288617 + L2 LINE L2 1739 3312 -1 699 216 139 21 chrX 138311383 138311577 -24288353 + MIR SINE MIR 24 240 -22 846 200 84 5 chrX 138312970 138313185 -24286745 + L1ME3A LINE L1 5924 6155 -15 491 257 44 7 chrX 138313205 138313341 -24286589 - MIR SINE MIR -108 154 14 714 238 77 17 chrX 138313423 138313658 -24286272 - MIR SINE MIR -1 261 13 1408 152 98 29 chrX 138314052 138314328 -24285602 + AluJo SINE Alu 1 295 -17 192 200 0 0 chrX 138314361 138314406 -24285524 + GA-rich Low_complexity Low_complexity 4 48 0 1233 251 63 30 chrX 138314583 138315042 -24284888 - L1ME4a LINE L1 -158 5963 5490 662 222 275 5 chrX 138315046 138315235 -24284695 + MIR SINE MIR 9 248 -14 628 232 278 5 chrX 138315595 138315789 -24284141 - MIR SINE MIR -3 259 13 207 250 0 0 chrX 138315832 138315916 -24284014 + (TG)n Simple_repeat Simple_repeat 2 85 0 550 329 42 25 chrX 138315929 138316215 -24283715 - L2 LINE L2 -3 3310 3020 215 215 190 0 chrX 138318116 138318195 -24281735 + MIR SINE MIR 88 181 -81 222 37 0 0 chrX 138318525 138318552 -24281378 + (TTCCC)n Simple_repeat Simple_repeat 2 28 0 2024 145 10 0 chrX 138318552 138318855 -24281075 - AluSx SINE Alu -6 306 1 185 233 0 0 chrX 138320222 138320265 -24279665 - L2 LINE L2 0 3313 3271 236 191 0 0 chrX 138320916 138320958 -24278972 - L2 LINE L2 -8 3305 3264 201 147 0 0 chrX 138321626 138321660 -24278270 + (T)n Simple_repeat Simple_repeat 1 34 0 664 249 10 58 chrX 138322058 138322263 -24277667 + MIR SINE MIR 47 241 -21 904 130 0 8 chrX 138322354 138322485 -24277445 + FLAM_C SINE Alu 2 131 -2 388 202 231 0 chrX 138322578 138322682 -24277248 + L2 LINE L2 3186 3313 0 186 329 177 0 chrX 138323083 138323162 -24276768 - MIR SINE MIR -9 253 161 183 264 113 0 chrX 138323176 138323229 -24276701 + L2 LINE L2 3214 3272 0 * 438 231 11 0 chrX 138323228 138323319 -24276611 - MIR SINE MIR -114 148 57 2523 77 0 3 chrX 138323853 138324166 -24275764 - AluSq SINE Alu -1 312 1 2836 316 125 16 chrX 138324584 138326579 -24273351 - L2 LINE L2 -43 3270 1062 537 306 63 10 chrX 138327356 138327562 -24272368 - MIR SINE MIR -33 229 13 13292 141 17 9 chrX 138329190 138331161 -24268769 - L1MA2 LINE L1 0 7723 5711 2453 33 40 13 chrX 138331161 138331463 -24268467 + AluY SINE Alu 1 310 -1 13292 141 17 9 chrX 138331463 138332880 -24267050 - L1MA2 LINE L1 -2012 5711 4307 * 22795 134 16 8 chrX 138332873 138336378 -24263552 - L1MA2 LINE L1 -4031 3534 4 3972 153 14 0 chrX 138336378 138336998 -24262932 - L1PA16 LINE L1 -4 6162 5534 546 251 80 68 chrX 138337223 138337386 -24262544 + MIR3 SINE MIR 22 186 -22 624 282 50 30 chrX 138337501 138337903 -24262027 + LTR16B LTR ERVL 1 464 0 358 248 76 9 chrX 138338227 138338332 -24261598 + MER5A DNA MER1_type 1 112 -77 2137 188 67 37 chrX 138338375 138338865 -24261065 - MLT1D LTR MaLR 0 505 1 832 269 60 31 chrX 138338994 138339344 -24260586 + L1ME4a LINE L1 5598 5957 -164 757 256 27 19 chrX 138339321 138339579 -24260351 + L1MC4a LINE L1 5665 5924 -1884 * 183 42 0 0 chrX 138339602 138339626 -24260304 + (TG)n Simple_repeat Simple_repeat 1 24 0 219 163 82 61 chrX 138339637 138339686 -24260244 + MER91B DNA MER1_type 28 77 -113 276 284 0 25 chrX 138339724 138339805 -24260125 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 213 94 0 0 chrX 138339875 138339907 -24260023 + (TG)n Simple_repeat Simple_repeat 1 32 0 396 0 0 0 chrX 138340010 138340054 -24259876 + (TG)n Simple_repeat Simple_repeat 1 44 0 1744 152 7 7 chrX 138340054 138340331 -24259599 - AluSx SINE Alu -33 279 3 210 238 343 9 chrX 138340739 138340844 -24259086 - MIR SINE MIR -10 252 113 621 219 134 16 chrX 138340891 138341078 -24258852 - MIR SINE MIR -6 256 48 1988 146 0 13 chrX 138341103 138341412 -24258518 - AluJo SINE Alu -7 305 1 951 110 0 143 chrX 138341813 138341965 -24257965 + L1MB2 LINE L1 5991 6163 -8 1781 165 7 0 chrX 138341965 138342250 -24257680 - AluJo SINE Alu -9 303 17 794 73 36 18 chrX 138342260 138342370 -24257560 - HY1 scRNA scRNA 0 112 1 951 110 0 143 chrX 138342370 138342415 -24257515 + L1MB2 LINE L1 6119 6169 -2 239 266 38 0 chrX 138343212 138343291 -24256639 + L1ME3A LINE L1 5893 5974 -196 515 263 80 36 chrX 138343295 138343622 -24256308 + L1M4 LINE L1 2800 3154 -2992 431 276 0 45 chrX 138343604 138343760 -24256170 + L1ME3A LINE L1 5962 6110 -60 * 249 51 103 13 chrX 138343825 138343903 -24256027 + (TA)n Simple_repeat Simple_repeat 2 86 0 305 267 22 0 chrX 138343904 138343994 -24255936 - L1MC4 LINE L1 -1339 6703 6612 42 0 0 0 chrX 138343996 138344038 -24255892 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chrX 138344054 138344087 -24255843 + AT_rich Low_complexity Low_complexity 1 33 0 400 84 103 0 chrX 138344087 138344242 -24255688 + (TTATA)n Simple_repeat Simple_repeat 4 174 0 658 69 0 129 chrX 138344292 138344408 -24255522 - L1MA1 LINE L1 -1 6301 6201 767 105 0 0 chrX 138344408 138344522 -24255408 + L1 LINE L1 4769 4882 -1264 270 260 0 0 chrX 138344611 138344661 -24255269 + L2 LINE L2 3206 3255 -17 650 193 9 0 chrX 138344934 138345043 -24254887 - MER81 DNA DNA 0 114 5 692 281 15 10 chrX 138345050 138345246 -24254684 - MIR SINE MIR -53 209 13 267 161 274 0 chrX 138346724 138346786 -24253144 + L2 LINE L2 3136 3214 -58 180 239 22 0 chrX 138346907 138346953 -24252977 + MIR SINE MIR 82 128 -80 700 314 23 12 chrX 138347315 138347573 -24252357 - MIR SINE MIR 0 262 2 358 309 79 0 chrX 138348452 138348578 -24251352 - L2 LINE L2 -34 3238 3103 535 253 64 59 chrX 138348715 138348917 -24251013 - MIR SINE MIR -58 204 2 746 264 141 5 chrX 138348943 138349163 -24250767 + MIR SINE MIR 7 256 -6 843 170 0 7 chrX 138349164 138349299 -24250631 - FLAM_C SINE Alu -8 135 2 858 289 112 58 chrX 138349813 138350219 -24249711 + L2 LINE L2 2046 2504 -810 3563 170 17 15 chrX 138350219 138350873 -24249057 - L1MB7 LINE L1 -16 6168 5514 858 289 112 58 chrX 138350873 138351134 -24248796 + L2 LINE L2 2504 2749 -565 826 239 11 0 chrX 138351134 138351310 -24248620 + MER5B DNA MER1_type 1 178 0 253 406 104 0 chrX 138351310 138351522 -24248408 + L2 LINE L2 2742 2975 -339 2380 160 8 6 chrX 138352470 138352832 -24247098 + MLT1A1 LTR MaLR 1 363 -2 249 129 16 97 chrX 138352957 138353019 -24246911 - MER5B DNA MER1_type -3 175 119 607 260 8 0 chrX 138353076 138353203 -24246727 - MER5B DNA MER1_type -49 129 2 3358 139 16 38 chrX 138353216 138353792 -24246138 + Tigger3b DNA MER2_type 1 563 -668 634 160 10 0 chrX 138353794 138353894 -24246036 + U6 snRNA snRNA 1 101 -6 4051 121 24 43 chrX 138353896 138354123 -24245807 + Tigger3b DNA MER2_type 549 779 -2249 1791 191 0 0 chrX 138354123 138354411 -24245519 - AluJo SINE Alu -24 288 1 4051 121 24 43 chrX 138354411 138354879 -24245051 + Tigger3b DNA MER2_type 779 1231 0 192 77 0 0 chrX 138355525 138355551 -24244379 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 337 261 127 102 chrX 138357192 138357298 -24242632 - L2 LINE L2 -11 3261 3159 1961 209 31 14 chrX 138357298 138357723 -24242207 - MER63B DNA MER1_type 0 436 5 337 261 127 102 chrX 138357723 138357899 -24242031 - L2 LINE L2 -113 3159 2972 219 200 73 82 chrX 138358012 138358122 -24241808 - L2 LINE L2 -177 3095 2987 324 0 0 0 chrX 138359021 138359057 -24240873 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1797 150 4 7 chrX 138359058 138359338 -24240592 - AluJb SINE Alu -32 280 2 460 197 56 56 chrX 138359418 138359560 -24240370 - L2 LINE L2 -4 3309 3168 1835 149 0 50 chrX 138359588 138359890 -24240040 - AluSx SINE Alu -25 287 1 197 298 57 64 chrX 138359921 138360062 -24239868 - L2 LINE L2 -156 3116 2977 283 275 92 33 chrX 138361254 138361374 -24238556 - MIR SINE MIR -18 244 118 393 209 116 0 chrX 138361374 138361460 -24238470 - L1MD2 LINE L1 -174 6579 6484 361 153 7 75 chrX 138361460 138361550 -24238380 + FLAM_A SINE Alu 85 180 -122 2187 99 0 10 chrX 138361550 138362001 -24237929 + AluSx SINE Alu 1 312 0 2245 113 0 16 chrX 138362001 138362319 -24237611 + AluSq SINE Alu 1 313 0 361 153 7 75 chrX 138362319 138362384 -24237546 + FLAM_A SINE Alu 65 133 -169 995 155 11 11 chrX 138362385 138362566 -24237364 + FRAM SINE Alu 1 176 0 1355 209 83 26 chrX 138362566 138362916 -24237014 - L1MD2 LINE L1 -282 6471 6102 4109 235 53 50 chrX 138362931 138363049 -24236881 - L1MD2 LINE L1 -2767 3773 3657 1138 163 0 22 chrX 138363049 138363227 -24236703 - FAM SINE Alu 0 175 2 4109 235 53 50 chrX 138363227 138363320 -24236610 - L1MD2 LINE L1 -2883 3657 3566 2357 93 3 0 chrX 138363320 138363620 -24236310 - AluSp SINE Alu -12 301 1 4109 235 53 50 chrX 138363620 138365615 -24234315 - L1MD2 LINE L1 -2974 3566 1562 1265 157 54 114 chrX 138365637 138365850 -24234080 - L1MD2 LINE L1 -5270 1273 1090 558 140 0 0 chrX 138365850 138365943 -24233987 - L1MA5 LINE L1 0 6300 6208 1265 157 54 114 chrX 138365943 138366098 -24233832 - L1MD2 LINE L1 -5453 1090 927 2578 261 32 55 chrX 138366674 138367663 -24232267 - L2 LINE L2 -220 3093 2131 824 149 0 0 chrX 138367663 138367777 -24232153 - AluJb SINE Alu -197 115 2 302 230 50 129 chrX 138367786 138367847 -24232083 + L2 LINE L2 3182 3227 -86 2710 188 22 2 chrX 138367847 138368305 -24231625 - MLT1C LTR MaLR 0 467 1 302 230 50 129 chrX 138368305 138368382 -24231548 + L2 LINE L2 3227 3309 -4 264 122 0 0 chrX 138368434 138368475 -24231455 + (TG)n Simple_repeat Simple_repeat 2 42 0 532 331 63 55 chrX 138368568 138369045 -24230885 + L2 LINE L2 2769 3254 -18 286 327 0 37 chrX 138369161 138369268 -24230662 + L3 LINE CR1 1471 1573 -4 323 235 0 0 chrX 138369934 138370002 -24229928 + MLT1K LTR MaLR 196 263 -325 286 237 26 0 chrX 138370150 138370226 -24229704 + GA-rich Low_complexity Low_complexity 1 78 0 270 0 0 0 chrX 138370305 138370335 -24229595 + (T)n Simple_repeat Simple_repeat 1 30 0 247 260 0 14 chrX 138370335 138370408 -24229522 + MLT1K LTR MaLR 517 588 0 305 190 76 25 chrX 138370591 138370670 -24229260 - MIR3 SINE MIR -28 180 98 256 117 17 17 chrX 138371314 138371374 -24228556 + (TA)n Simple_repeat Simple_repeat 2 61 0 204 253 121 22 chrX 138371485 138371576 -24228354 - L2 LINE L2 0 3313 3214 544 215 128 100 chrX 138371671 138371922 -24228008 + MIR SINE MIR 5 262 0 659 308 26 18 chrX 138372004 138372231 -24227699 + MIR SINE MIR 2 230 -32 3066 18 0 0 chrX 138372800 138373131 -24226799 + L1PA2 LINE L1 5825 6155 0 650 210 96 6 chrX 138373259 138373416 -24226514 - MIR SINE MIR -70 192 22 1025 266 120 37 chrX 138373491 138374059 -24225871 - MLT1L LTR MaLR 0 615 1 384 250 57 64 chrX 138375343 138375483 -24224447 - L2 LINE L2 -25 3247 3109 428 297 136 30 chrX 138375568 138375667 -24224263 - MIR SINE MIR -10 252 165 346 244 0 0 chrX 138375667 138375745 -24224185 + MER116 DNA Mariner 2 79 -1 428 297 136 30 chrX 138375745 138375922 -24224008 - MIR SINE MIR -97 165 2 464 324 15 23 chrX 138376999 138377261 -24222669 + L1MC4a LINE L1 5732 5991 -1817 864 137 15 0 chrX 138377270 138377401 -24222529 + AluJb SINE Alu 1 133 -179 315 0 0 0 chrX 138377536 138377571 -24222359 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 283 316 25 13 chrX 138377668 138377747 -24222183 - MER5A DNA MER1_type -95 94 15 21 0 0 0 chrX 138377747 138377768 -24222162 + AT_rich Low_complexity Low_complexity 1 21 0 290 261 108 87 chrX 138377780 138377876 -24222054 - L1MC4 LINE L1 -91 7951 7858 4987 116 55 29 chrX 138377876 138378635 -24221295 - MER4E LTR ERV1 0 779 1 290 261 108 87 chrX 138378635 138378779 -24221151 - L1MC4 LINE L1 -184 7858 7706 1259 113 28 0 chrX 138378808 138378985 -24220945 - AluSg/x SINE Alu -13 299 118 301 293 75 29 chrX 138379001 138379175 -24220755 + L1ME4a LINE L1 5937 6118 -3 1465 199 17 40 chrX 138381116 138381259 -24218671 + L1MB7 LINE L1 5769 5914 -270 1670 145 0 99 chrX 138381259 138381620 -24218310 - AluSx SINE Alu 0 340 10 1465 199 17 40 chrX 138381620 138381822 -24218108 + L1MB7 LINE L1 5914 6107 -77 1983 132 62 19 chrX 138382268 138382348 -24217582 + MER44D DNA MER2_type 1 76 -2415 2280 103 6 6 chrX 138382348 138382660 -24217270 + AluSx SINE Alu 1 312 0 1983 132 62 19 chrX 138382660 138382904 -24217026 + MER44D DNA MER2_type 76 609 0 2122 113 0 3 chrX 138383099 138383390 -24216540 - AluSx SINE Alu -21 291 2 1972 124 4 0 chrX 138383671 138383944 -24215986 - AluSx SINE Alu -38 274 1 230 200 0 0 chrX 138383976 138384021 -24215909 + L1MA9 LINE L1 6230 6274 -38 1025 182 30 72 chrX 138385062 138385242 -24214688 + MIR SINE MIR 19 205 -57 734 188 5 91 chrX 138385242 138385390 -24214540 - MER104 DNA MER2_type -1718 180 52 2045 116 32 0 chrX 138385390 138385529 -24214401 + AluSx SINE Alu 1 134 -178 194 0 39 0 chrX 138385529 138385555 -24214375 + (GTGTG)n Simple_repeat Simple_repeat 3 29 0 2045 116 32 0 chrX 138385555 138385699 -24214231 + AluSx SINE Alu 134 293 -19 734 188 5 91 chrX 138385699 138385747 -24214183 - MER104 DNA MER2_type -1846 52 1 1025 182 30 72 chrX 138385747 138385802 -24214128 + MIR SINE MIR 205 244 -18 1462 123 85 0 chrX 138385835 138386047 -24213883 - MER30 DNA MER1_type 0 230 1 1925 122 0 72 chrX 138386759 138387079 -24212851 + AluSx SINE Alu 1 297 -15 246 128 0 0 chrX 138387126 138387165 -24212765 + (ATG)n Simple_repeat Simple_repeat 1 39 0 606 203 117 18 chrX 138387165 138387328 -24212602 - MIR SINE MIR -1 261 83 1114 127 0 0 chrX 138387397 138387547 -24212383 - AluSq/x SINE Alu -163 150 1 568 314 20 47 chrX 138387685 138387940 -24211990 + MIR SINE MIR 1 248 -14 1638 154 68 3 chrX 138388377 138388669 -24211261 - AluJo SINE Alu -1 311 1 201 330 0 29 chrX 138388793 138388896 -24211034 - L3b LINE CR1 -225 1358 1259 593 254 32 32 chrX 138389877 138390062 -24209868 + MIR SINE MIR 55 239 -23 907 252 69 36 chrX 138391082 138391388 -24208542 + L2 LINE L2 2997 3312 -1 3100 101 14 0 chrX 138391610 138392035 -24207895 - L1MA2 LINE L1 0 6304 5874 191 192 39 103 chrX 138392297 138392375 -24207555 - MIR SINE MIR -76 186 114 513 234 156 6 chrX 138392718 138392896 -24207034 - MIR SINE MIR -21 241 40 2404 147 0 6 chrX 138393237 138393584 -24206346 - MER7A DNA MER2_type -3 343 1 772 196 238 23 chrX 138393685 138393899 -24206031 + MIR SINE MIR 2 261 -1 185 375 0 0 chrX 138394966 138395030 -24204900 + MER5A DNA MER1_type 85 148 -41 2214 127 23 144 chrX 138395182 138395669 -24204261 + MLT1C LTR MaLR 39 466 -1 219 279 16 0 chrX 138396193 138396254 -24203676 + MIR SINE MIR 90 151 -57 295 246 180 41 chrX 138396280 138396402 -24203528 + MER5A DNA MER1_type 7 145 -44 225 0 0 0 chrX 138396792 138396817 -24203113 + (A)n Simple_repeat Simple_repeat 1 25 0 244 241 176 43 chrX 138398477 138398664 -24201266 + L1ME4a LINE L1 5845 6056 -65 609 156 104 7 chrX 138399750 138399885 -24200045 + L1ME4a LINE L1 5970 6117 -4 258 349 92 0 chrX 138400296 138400405 -24199525 + MIR SINE MIR 6 124 -138 186 306 45 45 chrX 138400728 138400839 -24199091 - L2 LINE L2 -214 3058 2948 379 256 90 24 chrX 138400924 138401047 -24198883 - MIR3 SINE MIR -53 155 25 1002 162 10 20 chrX 138401108 138401305 -24198625 + L1MB7 LINE L1 5981 6175 -9 206 302 0 0 chrX 138401962 138402015 -24197915 - L2 LINE L2 -79 3234 3182 303 170 38 0 chrX 138402032 138402085 -24197845 - MER8 DNA MER2_type 0 239 185 * 1818 121 72 13 chrX 138402068 138402374 -24197556 + Tigger2 DNA MER2_type 2395 2718 0 1347 169 21 4 chrX 138402382 138402618 -24197312 + MLT1E1 LTR MaLR 2 241 -413 469 311 106 0 chrX 138402715 138402895 -24197035 - MIR SINE MIR -27 235 37 190 286 0 0 chrX 138403327 138403369 -24196561 + MER5B DNA MER1_type 6 47 -131 246 158 0 0 chrX 138403373 138403411 -24196519 - MER5B DNA MER1_type -140 38 1 1510 175 61 46 chrX 138403532 138403775 -24196155 + MER65C LTR ERV1 1 310 -151 1204 118 0 18 chrX 138403775 138403944 -24195986 - FRAM SINE Alu 0 166 1 1510 175 61 46 chrX 138403944 138404099 -24195831 + MER65C LTR ERV1 310 461 0 347 235 191 0 chrX 138404295 138404410 -24195520 - MIR SINE MIR -53 209 73 418 326 93 27 chrX 138404436 138404878 -24195052 - L1M4 LINE L1 -2155 3991 3521 2318 113 3 0 chrX 138404922 138405231 -24194699 + AluSx SINE Alu 1 310 -2 676 155 0 47 chrX 138407664 138407793 -24192137 - L2 LINE L2 0 3313 3191 208 224 0 41 chrX 138407827 138407876 -24192054 + MIR SINE MIR 74 120 -142 424 55 18 0 chrX 138408167 138408222 -24191708 + MADE1 DNA Mariner 1 56 -24 185 94 31 0 chrX 138408232 138408264 -24191666 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 412 248 128 0 chrX 138408284 138408425 -24191505 - L1ME4a LINE L1 -12 6109 5951 1980 193 58 48 chrX 138408564 138409026 -24190904 - MLT1C LTR MaLR 0 467 1 2442 85 7 0 chrX 138409475 138409780 -24190150 + AluSq SINE Alu 1 307 -6 26 0 0 0 chrX 138410034 138410060 -24189870 + AT_rich Low_complexity Low_complexity 1 26 0 452 223 29 10 chrX 138410273 138410376 -24189554 + MIR SINE MIR 21 125 -83 2174 123 7 0 chrX 138410797 138411099 -24188831 + AluSx SINE Alu 1 304 -8 318 322 147 32 chrX 138411406 138411720 -24188210 + L2 LINE L2 2919 3268 -4 186 43 0 0 chrX 138412449 138412472 -24187458 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 505 254 47 41 chrX 138412536 138412705 -24187225 + L2 LINE L2 3102 3271 -1 800 201 90 59 chrX 138413051 138413340 -24186590 + L1MC4a LINE L1 5649 5876 -298 225 204 46 130 chrX 138413412 138413520 -24186410 + HAL1 LINE L1 2408 2506 -1 188 300 0 0 chrX 138414429 138414479 -24185451 - L2 LINE L2 0 3272 3223 183 42 0 0 chrX 138414491 138414515 -24185415 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2084 123 0 7 chrX 138414616 138414916 -24185014 + AluSx SINE Alu 5 302 -10 2027 120 0 18 chrX 138414981 138415265 -24184665 + AluSg SINE Alu 1 308 0 222 0 35 0 chrX 138415265 138415294 -24184636 + (CAAA)n Simple_repeat Simple_repeat 1 76 0 685 302 84 80 chrX 138416179 138417062 -24182868 - L2 LINE L2 -628 2686 1801 575 304 18 14 chrX 138417769 138417989 -24181941 - MIR3 SINE MIR -44 218 1 183 42 0 0 chrX 138418588 138418612 -24181318 + (A)n Simple_repeat Simple_repeat 1 24 0 760 217 152 5 chrX 138419106 138419304 -24180626 + MIR SINE MIR 15 241 -21 204 228 0 0 chrX 138421038 138421095 -24178835 + (CA)n Simple_repeat Simple_repeat 2 58 0 633 183 50 0 chrX 138422292 138422412 -24177518 + MIR3 SINE MIR 81 206 -2 564 292 14 7 chrX 138423027 138423171 -24176759 - L3 LINE CR1 -17 1560 1416 204 254 0 36 chrX 138424653 138424708 -24175222 + MIR SINE MIR 20 72 -136 1125 279 48 78 chrX 138425439 138425981 -24173949 - L3 LINE CR1 -14 1563 1038 209 182 0 0 chrX 138427723 138427756 -24172174 + (TG)n Simple_repeat Simple_repeat 1 33 0 267 234 120 46 chrX 138427877 138428033 -24171897 + MIR SINE MIR 18 197 -65 437 271 116 7 chrX 138429302 138429457 -24170473 - MIR SINE MIR -66 196 25 252 218 0 0 chrX 138430503 138430590 -24169340 + CT-rich Low_complexity Low_complexity 2 88 0 477 0 0 0 chrX 138430647 138430700 -24169230 + (CA)n Simple_repeat Simple_repeat 2 54 0 752 283 75 41 chrX 138431528 138431917 -24168013 + L2 LINE L2 2288 2689 -625 189 275 87 54 chrX 138431961 138432110 -24167820 + L2 LINE L2 2835 2988 -284 379 333 81 0 chrX 138432148 138432271 -24167659 + L2 LINE L2 3140 3272 0 435 343 87 5 chrX 138433044 138433199 -24166731 + MIR SINE MIR 2 180 -82 2070 133 0 3 chrX 138433199 138433499 -24166431 + AluSx SINE Alu 1 299 -13 435 343 87 5 chrX 138433499 138433550 -24166380 + MIR SINE MIR 180 225 -37 719 16 78 0 chrX 138433914 138434043 -24165887 + (TA)n Simple_repeat Simple_repeat 1 139 0 1999 96 3 51 chrX 138434045 138434337 -24165593 - AluSc SINE Alu -31 278 1 604 300 136 13 chrX 138434510 138434893 -24165037 - L2 LINE L2 -1006 2308 1879 843 191 108 16 chrX 138434950 138435144 -24164786 + MIR SINE MIR 21 232 -30 277 220 0 0 chrX 138435530 138435580 -24164350 - LTR67 LTR ERVL -412 145 96 1004 161 0 6 chrX 138436901 138437062 -24162868 - AluJb SINE Alu -17 295 136 251 54 27 0 chrX 138438425 138438462 -24161468 + (GA)n Simple_repeat Simple_repeat 1 38 0 648 167 33 42 chrX 138439053 138439203 -24160727 - FRAM SINE Alu 0 40 1 378 357 40 46 chrX 138439225 138439620 -24160310 + L2 LINE L2 2298 2690 -624 1092 95 154 5 chrX 138440387 138440585 -24159345 - L1MA9 LINE L1 0 6312 6083 1485 149 4 8 chrX 138440590 138440838 -24159092 + MER2 DNA MER2_type 7 253 -92 830 109 17 17 chrX 138440904 138441023 -24158907 + MER2 DNA MER2_type 227 345 0 981 126 6 6 chrX 138441023 138441182 -24158748 - L1MA9 LINE L1 -225 6087 5929 367 275 44 81 chrX 138441435 138441595 -24158335 + MIR SINE MIR 22 175 -87 872 219 56 0 chrX 138441645 138441841 -24158089 - MIR SINE MIR -51 211 5 337 178 56 47 chrX 138442064 138442171 -24157759 + MIR SINE MIR 103 210 -52 1573 159 146 17 chrX 138443534 138443836 -24156094 - MER2 DNA MER2_type 0 344 4 252 86 0 0 chrX 138444357 138444392 -24155538 + (TC)n Simple_repeat Simple_repeat 1 35 0 2053 124 10 0 chrX 138444415 138444705 -24155225 - AluSx SINE Alu -17 295 3 2311 56 0 18 chrX 138446047 138446361 -24153569 - AluY SINE Alu 0 309 1 319 206 44 29 chrX 138450600 138450668 -24149262 - MIR SINE MIR -180 82 14 2083 81 4 0 chrX 138453900 138454160 -24145770 - AluSp SINE Alu -13 300 40 331 312 86 47 chrX 138454593 138454827 -24145103 + L2 LINE L2 1855 2097 -1217 247 308 51 26 chrX 138455145 138455262 -24144668 + L2 LINE L2 2219 2338 -976 291 330 22 22 chrX 138455889 138455980 -24143950 + L2 LINE L2 3158 3248 -24 910 135 14 0 chrX 138456033 138456174 -24143756 + AluSg/x SINE Alu 166 308 -2 1059 130 0 0 chrX 138457110 138457279 -24142651 + (TA)n Simple_repeat Simple_repeat 1 169 0 321 231 0 0 chrX 138457661 138457726 -24142204 + MER116 DNA Mariner 1 65 -15 713 217 152 14 chrX 138458546 138458761 -24141169 + L1ME1 LINE L1 5928 6146 -20 37 0 0 0 chrX 138458924 138458961 -24140969 + AT_rich Low_complexity Low_complexity 1 37 0 961 176 6 28 chrX 138459050 138459247 -24140683 + AluJb SINE Alu 133 312 0 548 200 26 0 chrX 138461524 138461639 -24138291 - L2 LINE L2 -2 3311 3194 22 0 0 0 chrX 138461918 138461940 -24137990 + AT_rich Low_complexity Low_complexity 1 22 0 244 321 37 45 chrX 138462196 138462330 -24137600 + L2 LINE L2 2538 2670 -644 907 116 0 0 chrX 138462812 138462933 -24136997 - FLAM_C SINE Alu -22 121 1 363 241 241 17 chrX 138463146 138463320 -24136610 - MIR SINE MIR -48 214 2 2261 101 7 0 chrX 138464598 138464894 -24135036 - AluSx SINE Alu -14 298 1 306 221 35 90 chrX 138466343 138466488 -24133442 + L1MC5 LINE L1 7784 7920 -41 544 300 31 0 chrX 138466548 138466708 -24133222 - MIR SINE MIR -39 223 59 5859 208 85 36 chrX 138466785 138466872 -24133058 + L1M4b LINE L1 1 82 -6877 1867 138 22 47 chrX 138466872 138467192 -24132738 + AluJo SINE Alu 1 312 0 5859 208 85 36 chrX 138467192 138469403 -24130527 + L1M4b LINE L1 82 2416 -4543 397 313 84 52 chrX 138469556 138469925 -24130005 + L1M4b LINE L1 2476 2818 -4139 27 0 0 0 chrX 138469941 138469968 -24129962 + AT_rich Low_complexity Low_complexity 1 27 0 4146 224 56 16 chrX 138470004 138470783 -24129147 + L1MCb LINE L1 1 747 -5817 1838 138 33 10 chrX 138470783 138471087 -24128843 + AluSx SINE Alu 1 311 -1 4146 224 56 16 chrX 138471087 138472238 -24127692 + L1MCb LINE L1 747 1851 -4713 2681 42 0 0 chrX 138472238 138472548 -24127382 - AluY SINE Alu -1 310 1 4146 224 56 16 chrX 138472548 138473532 -24126398 + L1MCb LINE L1 1851 3172 -3392 1157 186 51 36 chrX 138473547 138473881 -24126049 + L1MB7 LINE L1 4904 5242 -904 1065 160 0 6 chrX 138473881 138474062 -24125868 + Tigger1 DNA MER2_type 2 181 -2237 2375 90 3 0 chrX 138474062 138474363 -24125567 - AluSp SINE Alu -11 302 1 1050 141 31 16 chrX 138474363 138474555 -24125375 + Tigger1 DNA MER2_type 2218 2412 -6 734 164 0 13 chrX 138474557 138474737 -24125193 + L1MB7 LINE L1 5236 5413 -743 803 161 31 31 chrX 138474742 138474904 -24125026 + L1MB7 LINE L1 6007 6168 -16 1156 201 0 26 chrX 138474907 138475000 -24124930 + L1M4 LINE L1 5302 5396 -788 2168 112 47 19 chrX 138475000 138475365 -24124565 - THE1C LTR MaLR 0 375 1 1156 201 0 26 chrX 138475365 138475544 -24124386 + L1M4 LINE L1 5396 5567 -617 222 45 68 0 chrX 138475544 138475588 -24124342 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1512 99 131 0 chrX 138475621 138475842 -24124088 + AluSx SINE Alu 43 292 -20 180 111 0 0 chrX 138475842 138475869 -24124061 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 418 224 82 45 chrX 138476008 138476142 -24123788 + MIR SINE MIR 35 173 -89 484 258 106 49 chrX 138477041 138477305 -24122625 + L2 LINE L2 3034 3312 -1 1623 70 0 0 chrX 138478720 138478935 -24120995 + L1PA8 LINE L1 5958 6172 0 888 228 56 56 chrX 138479927 138480177 -24119753 - MIR SINE MIR 0 262 13 2135 116 7 3 chrX 138480224 138480518 -24119412 + AluSx SINE Alu 1 295 -17 1922 108 8 0 chrX 138480565 138480823 -24119107 + AluSx SINE Alu 1 260 -52 318 20 59 0 chrX 138480844 138480895 -24119035 + (TA)n Simple_repeat Simple_repeat 1 54 0 2434 89 14 43 chrX 138481324 138481740 -24118190 + L1P5 LINE L1 5271 5674 -480 296 285 53 8 chrX 138481857 138481986 -24117944 + MIR SINE MIR 21 153 -71 2021 120 7 0 chrX 138482095 138482402 -24117528 - AluSx SINE Alu 0 309 1 2054 122 0 52 chrX 138482608 138482956 -24116974 - AluSx SINE Alu 0 312 1 26 30 0 0 chrX 138483112 138483145 -24116785 + AT_rich Low_complexity Low_complexity 1 33 0 762 145 0 8 chrX 138484194 138484311 -24115619 - FLAM_C SINE Alu -16 127 12 229 268 45 62 chrX 138484324 138484436 -24115494 - MIR SINE MIR -40 222 113 22 35 0 0 chrX 138484671 138484700 -24115230 + AT_rich Low_complexity Low_complexity 1 29 0 866 87 0 0 chrX 138484826 138484941 -24114989 + L1PA6 LINE L1 6029 6143 -11 199 246 46 31 chrX 138485012 138485077 -24114853 - L2 LINE L2 0 3272 3207 354 223 0 7 chrX 138485465 138485599 -24114331 - MER20 DNA MER1_type -1 218 1 514 204 8 0 chrX 138485807 138485939 -24113991 + L1M4 LINE L1 2910 3042 -3104 * 10740 159 80 41 chrX 138485920 138486452 -24113478 + L1MCa LINE L1 1 511 -5915 2247 84 3 3 chrX 138486452 138486782 -24113148 - AluSq SINE Alu 0 330 1 10740 159 80 41 chrX 138486782 138488912 -24111018 + L1MCa LINE L1 511 2772 -3654 338 234 40 8 chrX 138489146 138489270 -24110660 + MER103 DNA DNA 35 162 -4 7128 218 43 23 chrX 138489560 138491676 -24108254 + L1MCa LINE L1 2755 4913 -1513 3128 146 38 30 chrX 138491685 138491822 -24108108 + L1MA8 LINE L1 5649 5783 -508 1919 172 0 0 chrX 138491822 138492118 -24107812 + AluJb SINE Alu 1 296 -16 3128 146 38 30 chrX 138492118 138492617 -24107313 + L1MA8 LINE L1 5783 6290 -1 4799 151 47 10 chrX 138492617 138493881 -24106049 + L1MB7 LINE L1 5155 6463 -1 2035 128 3 19 chrX 138494183 138494495 -24105435 + AluSx SINE Alu 1 307 -5 2334 119 0 0 chrX 138494609 138494919 -24105011 - AluSg SINE Alu 0 310 1 24 0 0 0 chrX 138494989 138495013 -24104917 + AT_rich Low_complexity Low_complexity 1 24 0 1837 170 3 6 chrX 138495019 138495331 -24104599 - AluJb SINE Alu -1 311 1 246 370 24 30 chrX 138497543 138497708 -24102222 + L2 LINE L2 2911 3074 -198 217 358 0 0 chrX 138497761 138497842 -24102088 - MER5B DNA MER1_type -39 139 59 1349 45 11 0 chrX 138497847 138498023 -24101907 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 282 160 0 0 chrX 138498025 138498075 -24101855 + CT-rich Low_complexity Low_complexity 1 50 0 2295 104 0 0 chrX 138498075 138498372 -24101558 - AluSx SINE Alu -12 300 4 187 179 0 26 chrX 138498376 138498415 -24101515 + MER5A DNA MER1_type 130 167 -22 1699 206 107 28 chrX 138499139 138499542 -24100388 + MLT2B1 LTR ERVL 20 464 -56 486 0 0 0 chrX 138499542 138499596 -24100334 + (TC)n Simple_repeat Simple_repeat 1 54 0 1699 206 107 28 chrX 138499596 138499658 -24100272 + MLT2B1 LTR ERVL 464 520 0 2442 93 0 0 chrX 138499727 138500037 -24099893 + AluSx SINE Alu 1 310 -2 2316 89 0 0 chrX 138500091 138500384 -24099546 + AluSg SINE Alu 1 293 -17 21 0 0 0 chrX 138500418 138500439 -24099491 + AT_rich Low_complexity Low_complexity 1 21 0 225 94 0 0 chrX 138500459 138500491 -24099439 + (TA)n Simple_repeat Simple_repeat 1 32 0 375 209 26 17 chrX 138500508 138500623 -24099307 + L1ME4a LINE L1 5966 6081 -40 335 262 92 63 chrX 138501112 138501318 -24098612 + L1MC/D LINE L1 5576 5787 -2021 1900 133 78 23 chrX 138503060 138503407 -24096523 + MER47A DNA MER2_type 1 366 0 24 32 0 0 chrX 138503663 138503694 -24096236 + AT_rich Low_complexity Low_complexity 1 31 0 346 272 84 66 chrX 138503927 138504140 -24095790 - L1ME4a LINE L1 -58 6063 5847 642 274 45 11 chrX 138504217 138504396 -24095534 - MIR SINE MIR -71 191 7 185 385 18 56 chrX 138504427 138504713 -24095217 - L2 LINE L2 -162 3110 2836 2564 232 38 25 chrX 138504840 138505679 -24094251 + L1M4 LINE L1 3286 4135 -2011 268 253 89 0 chrX 138506999 138507078 -24092852 - MLT1L LTR MaLR -80 535 450 288 0 0 0 chrX 138507160 138507192 -24092738 + (TG)n Simple_repeat Simple_repeat 2 33 0 2250 81 46 0 chrX 138507739 138508024 -24091906 + AluSp SINE Alu 1 298 -15 923 94 8 0 chrX 138508115 138508242 -24091688 + FLAM_C SINE Alu 3 130 -3 217 364 5 86 chrX 138508464 138508662 -24091268 + L2 LINE L2 2882 3063 -209 324 317 65 52 chrX 138509338 138509628 -24090302 + L2 LINE L2 2469 2762 -552 1206 260 84 14 chrX 138510033 138510545 -24089385 - L2 LINE L2 0 3272 2797 192 40 0 0 chrX 138510545 138510570 -24089360 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2114 118 0 0 chrX 138510570 138510850 -24089080 - AluSx SINE Alu -32 280 1 1206 260 84 14 chrX 138510850 138510968 -24088962 - L2 LINE L2 -474 2798 2599 303 150 0 83 chrX 138511775 138511835 -24088095 + Tigger2 DNA MER2_type 1 55 -2663 * 1470 109 113 4 chrX 138511814 138512061 -24087869 + Tigger2 DNA MER2_type 2391 2664 -54 449 215 0 0 chrX 138512500 138512579 -24087351 + Tigger2 DNA MER2_type 2640 2718 0 2378 73 3 0 chrX 138512580 138512883 -24087047 + AluY SINE Alu 1 304 -7 24 0 0 0 chrX 138512933 138512957 -24086973 + AT_rich Low_complexity Low_complexity 1 24 0 1800 158 13 10 chrX 138513234 138513545 -24086385 + AluJb SINE Alu 1 312 0 417 35 0 0 chrX 138514857 138514915 -24085015 - L1PB4 LINE L1 0 6156 6099 284 170 0 0 chrX 138515382 138515429 -24084501 - MIR SINE MIR -1 261 215 190 292 154 0 chrX 138515518 138515583 -24084347 - MIR SINE MIR -154 108 34 209 345 97 35 chrX 138517064 138517177 -24082753 + L2 LINE L2 3119 3238 -34 482 271 117 29 chrX 138517201 138517441 -24082489 + MIR SINE MIR 2 262 0 189 0 0 0 chrX 138518226 138518247 -24081683 + (A)n Simple_repeat Simple_repeat 1 21 0 1714 123 21 105 chrX 138521346 138521678 -24078252 - AluYb8 SINE Alu -14 304 1 439 238 0 101 chrX 138521991 138522046 -24077884 - MIR SINE MIR -13 249 190 2159 178 22 6 chrX 138522046 138522405 -24077525 + MLT1A1 LTR MaLR 1 365 0 439 238 0 101 chrX 138522405 138522517 -24077413 - MIR SINE MIR -72 190 99 462 266 8 39 chrX 138523841 138523969 -24075961 + MIR SINE MIR 20 143 -65 2135 122 13 6 chrX 138524845 138525156 -24074774 + AluSq SINE Alu 1 313 0 524 198 90 0 chrX 138526499 138526610 -24073320 + L2 LINE L2 3191 3311 -2 1761 112 27 27 chrX 138527626 138527884 -24072046 + AluSx SINE Alu 1 258 -54 288 163 0 0 chrX 138527901 138527944 -24071986 + AluSx SINE Alu 246 288 -14 27 0 0 0 chrX 138527947 138527974 -24071956 + AT_rich Low_complexity Low_complexity 1 27 0 30 48 0 16 chrX 138528560 138528580 -24071350 + AT_rich Low_complexity Low_complexity 1 20 -41 2622 42 0 6 chrX 138528580 138528893 -24071037 - AluY SINE Alu 0 311 1 30 48 0 16 chrX 138528893 138528934 -24070996 + AT_rich Low_complexity Low_complexity 20 61 0 24 32 0 0 chrX 138529154 138529185 -24070745 + AT_rich Low_complexity Low_complexity 1 31 0 253 130 0 93 chrX 138529382 138529436 -24070494 - L2 LINE L2 0 3313 3265 1946 110 46 4 chrX 138529904 138530185 -24069745 + AluSx SINE Alu 6 298 -14 23 0 0 0 chrX 138531394 138531417 -24068513 + AT_rich Low_complexity Low_complexity 1 23 0 28 61 0 0 chrX 138531960 138532009 -24067921 + AT_rich Low_complexity Low_complexity 1 49 0 2245 88 3 26 chrX 138532445 138532750 -24067180 - AluSq SINE Alu -10 303 6 299 260 0 0 chrX 138532944 138533021 -24066909 - MIR SINE MIR -6 256 180 2186 122 0 0 chrX 138533037 138533333 -24066597 - AluSx SINE Alu -16 296 1 226 297 0 0 chrX 138533481 138533545 -24066385 - tRNA-Glu-GAG tRNA tRNA -5 70 7 427 344 47 26 chrX 138534003 138534084 -24065846 - L2 LINE L2 -2 3270 3192 2332 113 0 0 chrX 138534084 138534394 -24065536 + AluSx SINE Alu 1 310 -2 427 344 47 26 chrX 138534394 138534504 -24065426 - L2 LINE L2 -80 3192 3075 330 170 0 0 chrX 138534662 138534715 -24065215 + MER5B DNA MER1_type 2 54 -124 2187 256 10 26 chrX 138534740 138535326 -24064604 + L1ME3A LINE L1 5567 6143 -27 492 252 0 52 chrX 138535350 138535485 -24064445 + MER5B DNA MER1_type 46 173 -5 564 323 48 20 chrX 138535533 138535784 -24064146 + MIR SINE MIR 2 259 -3 223 385 50 19 chrX 138536235 138536343 -24063587 + MIR3 SINE MIR 15 124 -92 297 0 0 0 chrX 138538380 138538413 -24061517 + (CAG)n Simple_repeat Simple_repeat 2 34 0 345 273 127 0 chrX 138539083 138539193 -24060737 - MIR3 SINE MIR -50 158 35 353 223 11 0 chrX 138539495 138539589 -24060341 + GA-rich Low_complexity Low_complexity 1 95 0 2088 109 3 0 chrX 138539671 138539982 -24059948 + AluSx SINE Alu 1 312 0 800 245 112 37 chrX 138540420 138540742 -24059188 + L1ME LINE L1 5346 5691 -430 * 3828 196 71 46 chrX 138540739 138541255 -24058675 + L1M4 LINE L1 3780 4281 -1865 1906 155 0 3 chrX 138541255 138541545 -24058385 + AluJb SINE Alu 1 289 -23 3828 196 71 46 chrX 138541545 138542288 -24057642 + L1M4 LINE L1 4281 5168 -978 6186 75 24 2 chrX 138542288 138543093 -24056837 + L1MA1 LINE L1 5481 6302 0 1926 142 30 3 chrX 138543130 138543433 -24056497 + AluSx SINE Alu 1 311 -1 244 235 39 0 chrX 138543835 138543886 -24056044 - L2 LINE L2 -10 3262 3210 910 298 8 4 chrX 138544160 138544402 -24055528 - MIR SINE MIR -10 252 10 670 167 0 0 chrX 138544540 138544642 -24055288 + U6 snRNA snRNA 1 102 -5 25 65 0 0 chrX 138544642 138544688 -24055242 + AT_rich Low_complexity Low_complexity 1 46 0 2386 109 0 0 chrX 138544907 138545219 -24054711 + AluSx SINE Alu 1 312 0 183 139 0 0 chrX 138545385 138545421 -24054509 + (GA)n Simple_repeat Simple_repeat 2 37 0 275 310 0 0 chrX 138545553 138545640 -24054290 - MIR SINE MIR 0 262 176 9225 154 11 17 chrX 138545642 138547402 -24052528 + L1PB1 LINE L1 3546 5315 -836 491 77 0 13 chrX 138547402 138547480 -24052450 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 2388 93 0 0 chrX 138547480 138547791 -24052139 + AluSx SINE Alu 1 311 -1 9225 154 11 17 chrX 138547791 138548295 -24051635 + L1PB1 LINE L1 5314 5788 -363 249 33 0 0 chrX 138548295 138548325 -24051605 + (CA)n Simple_repeat Simple_repeat 2 31 0 9225 154 11 17 chrX 138548325 138548682 -24051248 + L1PB1 LINE L1 5788 6146 -5 715 218 18 35 chrX 138548697 138548867 -24051063 - MIR SINE MIR -82 180 14 1814 151 38 10 chrX 138549025 138549316 -24050614 - AluJb SINE Alu -13 299 1 440 237 32 0 chrX 138549316 138549409 -24050521 - MIR SINE MIR -71 191 96 207 162 0 0 chrX 138551725 138551762 -24048168 + (CA)n Simple_repeat Simple_repeat 2 38 0 423 218 165 8 chrX 138552641 138552774 -24047156 - MER117 DNA MER1_type -6 191 38 395 284 84 21 chrX 138552809 138552999 -24046931 + L2 LINE L2 3112 3313 0 839 251 56 47 chrX 138553115 138553454 -24046476 - L1ME1 LINE L1 -4 6162 5821 317 355 20 13 chrX 138554583 138554735 -24045195 - MER5A DNA MER1_type -30 159 7 258 220 30 40 chrX 138554754 138554854 -24045076 + L2 LINE L2 648 746 -2568 1371 207 231 81 chrX 138554856 138555498 -24044432 + LTR41 LTR ERVL 5 742 -31 2210 113 0 0 chrX 138555499 138555810 -24044120 + AluSq SINE Alu 1 311 0 1874 160 6 13 chrX 138556011 138556323 -24043607 - AluJo SINE Alu 0 312 3 2257 117 0 0 chrX 138556419 138556717 -24043213 + AluSx SINE Alu 1 298 -14 523 371 11 11 chrX 138556790 138557073 -24042857 - L1MEc LINE L1 -6077 319 37 1536 144 95 35 chrX 138557154 138557438 -24042492 - AluJo SINE Alu -11 301 1 312 296 92 28 chrX 138557484 138557555 -24042375 + ERVL LTR ERVL 5214 5279 -485 387 0 0 0 chrX 138557555 138557598 -24042332 + (TA)n Simple_repeat Simple_repeat 2 44 0 312 296 92 28 chrX 138557598 138557668 -24042262 + ERVL LTR ERVL 5279 5364 -400 596 234 0 21 chrX 138557968 138558109 -24041821 - L2 LINE L2 0 3313 3176 1981 148 0 0 chrX 138558136 138558433 -24041497 + AluSx SINE Alu 1 297 -15 2412 93 7 0 chrX 138558433 138558735 -24041195 + AluSp SINE Alu 1 304 -9 832 284 158 6 chrX 138558742 138559091 -24040839 - L2 LINE L2 -1216 2098 1697 2298 269 101 38 chrX 138559179 138559444 -24040486 + L2 LINE L2 1148 1395 -1919 2034 103 14 4 chrX 138559444 138559758 -24040172 + AluSq SINE Alu 1 317 0 2298 269 101 38 chrX 138559758 138559993 -24039937 + L2 LINE L2 1395 1614 -1700 2249 88 10 0 chrX 138559993 138560288 -24039642 + AluSp SINE Alu 2 299 -14 2298 269 101 38 chrX 138560288 138560901 -24039029 + L2 LINE L2 1614 2336 -978 603 265 103 5 chrX 138560941 138561145 -24038785 + MIR SINE MIR 2 225 -37 2102 121 0 3 chrX 138561145 138561442 -24038488 + AluSx SINE Alu 1 296 -16 621 245 7 14 chrX 138561915 138562062 -24037868 - L2 LINE L2 0 3313 3168 2321 65 52 0 chrX 138562087 138562378 -24037552 + AluY SINE Alu 1 306 -5 1897 160 7 3 chrX 138562388 138562695 -24037235 + AluSx SINE Alu 1 308 -4 1026 293 90 3 chrX 138562701 138563046 -24036884 - L2 LINE L2 -1216 2098 1724 2168 125 0 0 chrX 138563062 138563357 -24036573 - AluSx SINE Alu -17 295 1 2316 253 128 43 chrX 138563465 138563723 -24036207 + L2 LINE L2 1151 1385 -1929 2016 122 3 0 chrX 138563723 138564009 -24035921 + AluSx SINE Alu 1 287 -25 2316 253 128 43 chrX 138564009 138564847 -24035083 + L2 LINE L2 1385 2341 -973 381 270 153 6 chrX 138564887 138565050 -24034880 + MIR SINE MIR 2 188 -74 2185 107 0 19 chrX 138565058 138565376 -24034554 - AluSq SINE Alu 0 313 2 2113 128 3 0 chrX 138565422 138565728 -24034202 + AluSx SINE Alu 1 307 -5 309 307 102 0 chrX 138565750 138565887 -24034043 + ERVL LTR ERVL 5214 5364 -400 395 238 74 16 chrX 138566190 138566312 -24033618 - L2 LINE L2 -17 3296 3168 2118 134 0 0 chrX 138566336 138566635 -24033295 + AluSx SINE Alu 1 299 -13 833 312 103 0 chrX 138566647 138566702 -24033228 - L2 LINE L2 -1217 2097 2049 1911 140 10 7 chrX 138566702 138567002 -24032928 + AluSq SINE Alu 1 301 -12 833 312 103 0 chrX 138567002 138567276 -24032654 - L2 LINE L2 -1265 2049 1734 623 249 127 20 chrX 138567399 138567652 -24032278 + L2 LINE L2 1147 1426 -1888 2211 106 3 0 chrX 138567658 138567950 -24031980 + AluSq SINE Alu 1 293 -20 693 169 190 22 chrX 138568218 138568402 -24031528 - MIR SINE MIR 0 262 48 1769 151 63 20 chrX 138568831 138569135 -24030795 - MSTC LTR MaLR 0 428 39 2259 104 0 0 chrX 138569135 138569424 -24030506 + AluSq SINE Alu 5 293 -20 1769 151 63 20 chrX 138569424 138569465 -24030465 - MSTC LTR MaLR -389 39 1 404 211 171 49 chrX 138569466 138569712 -24030218 + HAL1 LINE L1 712 987 -1520 * 519 259 135 29 chrX 138569708 138569736 -24030194 + L1ME2 LINE L1 4735 4759 -1387 2283 105 0 3 chrX 138569736 138570031 -24029899 + AluSq SINE Alu 1 294 -19 519 259 135 29 chrX 138570031 138570276 -24029654 + L1ME2 LINE L1 4759 5037 -1109 668 188 0 0 chrX 138570278 138570390 -24029540 + AluJb SINE Alu 3 114 -198 473 236 97 26 chrX 138570535 138570730 -24029200 + L1ME2 LINE L1 5188 5396 -750 1265 94 12 160 chrX 138570730 138570782 -24029148 + AluSg/x SINE Alu 84 142 -170 2372 97 0 6 chrX 138570782 138571093 -24028837 + AluSg SINE Alu 2 310 0 1265 94 12 160 chrX 138571093 138571116 -24028814 + AluSg/x SINE Alu 142 167 -145 2373 82 0 0 chrX 138571116 138571409 -24028521 + AluY SINE Alu 1 293 -18 1265 94 12 160 chrX 138571409 138571588 -24028342 + AluSg/x SINE Alu 167 301 -11 956 183 89 16 chrX 138571599 138571673 -24028257 + L1MD3 LINE L1 7732 7799 -196 1248 175 147 4 chrX 138571673 138571925 -24028005 - AluJb SINE Alu -24 288 1 956 183 89 16 chrX 138571925 138572096 -24027834 + L1MD3 LINE L1 7799 7995 0 932 168 53 66 chrX 138572090 138572245 -24027685 + L1ME2 LINE L1 5384 5537 -627 * 2183 93 38 0 chrX 138572245 138572536 -24027394 + AluSx SINE Alu 1 302 -10 932 168 53 66 chrX 138572536 138572606 -24027324 + L1ME2 LINE L1 5537 5606 -558 2063 187 108 74 chrX 138572607 138573065 -24026865 + MER6A DNA MER2_type 1 483 -382 1421 151 65 36 chrX 138573065 138573344 -24026586 + AluJo SINE Alu 3 289 -23 2063 187 108 74 chrX 138573344 138573442 -24026488 + MER6A DNA MER2_type 483 576 -29 1057 209 227 25 chrX 138573481 138573921 -24026009 + L1ME2 LINE L1 5609 6137 -27 397 303 162 11 chrX 138573961 138574232 -24025698 + L1ME LINE L1 5451 5762 -400 2006 116 3 7 chrX 138574525 138574809 -24025121 + AluSx SINE Alu 1 283 -29 1463 135 50 5 chrX 138576821 138577043 -24022887 + AluSx SINE Alu 4 235 -77 276 100 0 0 chrX 138577052 138577092 -24022838 + (A)n Simple_repeat Simple_repeat 1 40 0 1906 134 48 0 chrX 138577092 138577217 -24022713 + AluSq SINE Alu 1 119 -194 180 0 0 0 chrX 138577217 138577237 -24022693 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1906 134 48 0 chrX 138577237 138577402 -24022528 + AluSq SINE Alu 119 305 -8 2309 68 17 10 chrX 138577432 138577728 -24022202 + AluY SINE Alu 1 298 -13 1890 129 17 26 chrX 138577918 138578220 -24021710 - AluSg SINE Alu -11 299 1 22 0 0 0 chrX 138579314 138579336 -24020594 + AT_rich Low_complexity Low_complexity 1 22 0 2250 108 0 3 chrX 138582069 138582365 -24017565 - AluSg SINE Alu -13 297 3 2151 129 3 3 chrX 138582380 138582689 -24017241 - AluSc SINE Alu 0 309 1 2168 81 20 20 chrX 138582984 138583279 -24016651 - AluSg SINE Alu -15 295 1 1130 169 41 0 chrX 138583324 138583519 -24016411 + AluSx SINE Alu 1 203 -109 2576 47 7 0 chrX 138583687 138583985 -24015945 - AluY SINE Alu -11 300 1 2201 112 0 7 chrX 138584258 138584571 -24015359 + AluSq SINE Alu 1 311 0 285 82 33 66 chrX 138584781 138584842 -24015088 - Alu SINE Alu 0 302 244 1163 54 34 0 chrX 138584987 138585135 -24014795 - AluSp SINE Alu -160 153 1 1185 241 128 20 chrX 138585154 138585226 -24014704 + L1M4 LINE L1 3782 3845 -2301 2150 123 3 3 chrX 138585226 138585527 -24014403 + AluSx SINE Alu 1 301 -11 1185 241 128 20 chrX 138585527 138585852 -24014078 + L1M4 LINE L1 3845 4222 -1924 1002 185 55 65 chrX 138587292 138587466 -24012464 - MER33 DNA MER1_type -2262 323 149 2493 59 3 3 chrX 138587466 138587773 -24012157 - AluSg SINE Alu -3 307 1 2336 76 10 0 chrX 138587783 138588073 -24011857 - AluSx SINE Alu -13 299 7 1002 185 55 65 chrX 138588073 138588179 -24011751 - MER33 DNA MER1_type -2445 140 35 180 0 0 0 chrX 138588441 138588461 -24011469 + (CGGGG)n Simple_repeat Simple_repeat 3 22 0 256 307 13 29 chrX 138589078 138589229 -24010701 + CT-rich Low_complexity Low_complexity 1 148 0 410 251 11 64 chrX 138589276 138589463 -24010467 + CT-rich Low_complexity Low_complexity 3 179 0 417 252 18 0 chrX 138589774 138589885 -24010045 + MIR SINE MIR 149 261 -1 455 204 29 23 chrX 138590477 138590649 -24009281 + CT-rich Low_complexity Low_complexity 1 173 0 2166 116 6 41 chrX 138590649 138590969 -24008961 - AluSx SINE Alu -2 310 2 318 151 0 0 chrX 138590969 138591022 -24008908 + MER4A LTR ERV1 612 664 0 552 209 8 122 chrX 138591022 138591183 -24008747 - L1M4 LINE L1 -1132 5014 4891 1547 115 119 45 chrX 138591183 138591292 -24008638 - AluSx SINE Alu -22 290 191 1694 102 74 126 chrX 138591292 138591617 -24008313 - AluSx SINE Alu -4 308 1 1547 115 119 45 chrX 138591617 138591776 -24008154 - AluSx SINE Alu -121 191 2 552 209 8 122 chrX 138591776 138591868 -24008062 - L1M4 LINE L1 -1255 4891 4790 207 0 0 0 chrX 138592149 138592172 -24007758 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2350 104 3 0 chrX 138592177 138592486 -24007444 + AluSp SINE Alu 1 310 -3 632 162 0 8 chrX 138592585 138592702 -24007228 - L1MB8 LINE L1 -5 6173 6058 1939 139 20 7 chrX 138593379 138593674 -24006256 + AluSx SINE Alu 1 299 -13 1039 161 35 0 chrX 138593713 138593887 -24006043 - AluJo SINE Alu -11 301 122 2246 107 3 10 chrX 138593888 138594198 -24005732 - AluSg SINE Alu -2 308 1 665 124 0 35 chrX 138594229 138594342 -24005588 - FLAM_C SINE Alu 0 143 35 1780 141 0 31 chrX 138594375 138594666 -24005264 - AluSx SINE Alu -1 311 30 206 397 0 0 chrX 138594698 138594766 -24005164 + polypyrimidine Low_complexity Low_complexity 2 69 0 203 86 0 29 chrX 138594769 138594804 -24005126 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1076 83 14 7 chrX 138594944 138595088 -24004842 + AluSp/q SINE Alu 154 298 -15 303 250 56 9 chrX 138595298 138595406 -24004524 + L1MC/D LINE L1 5697 5809 -1999 522 302 53 61 chrX 138595459 138595511 -24004419 + MIR SINE MIR 3 54 -208 2105 115 7 17 chrX 138595511 138595807 -24004123 + AluSx SINE Alu 1 293 -19 2032 124 3 19 chrX 138595807 138596120 -24003810 + AluSg SINE Alu 1 309 -1 522 302 53 61 chrX 138596120 138596311 -24003619 + MIR SINE MIR 52 245 -17 1769 207 41 46 chrX 138596631 138597042 -24002888 + LTR2 LTR ERV1 41 449 0 3011 109 2 16 chrX 138597042 138597474 -24002456 + Harlequin LTR ERV1 1 426 -6470 932 181 153 39 chrX 138597478 138597732 -24002198 + Harlequin LTR ERV1 330 612 -6284 4054 211 25 9 chrX 138597733 138598482 -24001448 + Harlequin LTR ERV1 721 1481 -6945 1973 111 103 95 chrX 138598453 138598842 -24001088 + HERV3 LTR ERV1 3930 4321 -3492 * 1844 225 55 3 chrX 138598851 138599198 -24000732 + HERV3 LTR ERV1 1721 2085 -6341 1994 254 8 0 chrX 138599446 138599844 -24000086 + HERV3 LTR ERV1 2069 2469 -5957 510 244 32 24 chrX 138599843 138599966 -23999964 + HERV3 LTR ERV1 3701 3824 -4602 * 6302 206 29 11 chrX 138599938 138601097 -23998833 + HERV3 LTR ERV1 5135 6313 -2113 1991 201 15 37 chrX 138601152 138601888 -23998042 + HERV3 LTR ERV1 7012 7811 -2 1649 202 57 49 chrX 138601963 138602369 -23997561 + LTR2 LTR ERV1 41 449 0 351 234 0 0 chrX 138602399 138602523 -23997407 + (TA)n Simple_repeat Simple_repeat 1 124 0 2319 106 0 0 chrX 138602527 138602820 -23997110 - AluSq SINE Alu -20 293 1 1101 103 0 0 chrX 138602820 138602956 -23996974 - AluSq/x SINE Alu -176 136 1 1837 157 17 7 chrX 138603037 138603336 -23996594 + AluJo SINE Alu 1 302 -10 557 192 135 26 chrX 138603454 138603647 -23996283 - L1MC5 LINE L1 -581 7380 7167 799 199 41 6 chrX 138603681 138603852 -23996078 - LTR41 LTR ERVL -596 177 1 1244 226 38 41 chrX 138603885 138604253 -23995677 - L1MEc LINE L1 -5994 402 36 2080 124 0 0 chrX 138604287 138604596 -23995334 - AluSq SINE Alu 0 309 1 447 137 63 32 chrX 138604616 138604711 -23995219 - L1MA8 LINE L1 0 6291 6194 2261 109 7 0 chrX 138604713 138605016 -23994914 - AluSp SINE Alu -8 305 1 2195 123 0 0 chrX 138605124 138605417 -23994513 - AluSg SINE Alu -17 293 1 2204 109 13 19 chrX 138605428 138605741 -23994189 - AluSx SINE Alu -1 311 1 293 270 196 9 chrX 138605835 138606065 -23993865 - L1MEd LINE L1 -4863 1256 984 2275 113 3 3 chrX 138606065 138606376 -23993554 - AluSx SINE Alu -1 311 1 573 312 59 80 chrX 138606381 138606773 -23993157 - L1MEd LINE L1 -5237 882 483 1923 129 56 0 chrX 138606773 138607060 -23992870 - AluSx SINE Alu -9 303 1 573 312 59 80 chrX 138607060 138607520 -23992410 - L1MEd LINE L1 -5636 483 48 1556 150 117 4 chrX 138607739 138608005 -23991925 - AluJb SINE Alu -16 296 1 2397 61 7 3 chrX 138608035 138608329 -23991601 - AluY SINE Alu -16 295 1 1023 152 17 39 chrX 138608337 138608515 -23991415 - AluJb SINE Alu 0 312 139 214 77 0 96 chrX 138608698 138608750 -23991180 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 2368 197 17 51 chrX 138608750 138608971 -23990959 - L1MC/D LINE L1 -644 5975 5748 2093 138 35 19 chrX 138608971 138609340 -23990590 + THE1C LTR MaLR 1 375 0 2368 197 17 51 chrX 138609340 138609511 -23990419 - L1MC/D LINE L1 -871 5748 5573 2493 91 0 0 chrX 138609511 138609818 -23990112 - AluSx SINE Alu -5 307 1 2368 197 17 51 chrX 138609818 138610312 -23989618 - L1MC/D LINE L1 -1046 5573 5123 2090 122 24 0 chrX 138610312 138610607 -23989323 + AluSq SINE Alu 1 302 -11 2368 197 17 51 chrX 138610607 138610833 -23989097 - L1MC/D LINE L1 -1496 5123 4891 2065 126 7 0 chrX 138610904 138611181 -23988749 - AluSx SINE Alu -33 279 1 453 198 0 0 chrX 138611183 138611269 -23988661 - L1MC/D LINE L1 -2260 4146 4061 2371 189 28 69 chrX 138611275 138611814 -23988116 - MLT2B3 LTR ERVL 0 554 38 192 40 0 0 chrX 138611962 138611987 -23987943 + (CA)n Simple_repeat Simple_repeat 2 26 0 1985 134 7 3 chrX 138611997 138612281 -23987649 - AluSx SINE Alu -27 285 1 1047 238 27 23 chrX 138612284 138612583 -23987347 - L1MC/D LINE L1 -2391 4015 3716 2420 70 3 16 chrX 138612597 138612913 -23987017 - AluSp SINE Alu -1 312 1 542 149 23 0 chrX 138612916 138613003 -23986927 - AluJ/FLAM SINE Alu -223 89 1 626 254 35 19 chrX 138613006 138613262 -23986668 - L1MC/D LINE L1 -2697 3709 3450 811 77 0 0 chrX 138613263 138613367 -23986563 + AluSc SINE Alu 206 309 0 2578 154 60 14 chrX 138613411 138613912 -23986018 - L1MA4 LINE L1 -4 6296 5773 2346 98 0 0 chrX 138613970 138614267 -23985663 - AluSx SINE Alu -15 297 1 818 163 7 21 chrX 138614310 138614451 -23985479 - FLAM_C SINE Alu -4 139 1 385 146 8 123 chrX 138614451 138614581 -23985349 - L1MC/D LINE L1 -3037 3369 3255 2237 196 47 12 chrX 138614583 138615077 -23984853 + L1MB7 LINE L1 5542 6052 -132 1019 158 0 29 chrX 138615077 138615248 -23984682 - FRAM SINE Alu -13 163 1 408 104 9 170 chrX 138615248 138615354 -23984576 + L1MB7 LINE L1 6051 6139 -45 858 149 64 0 chrX 138615355 138615496 -23984434 + AluJo SINE Alu 1 150 -162 3461 215 47 47 chrX 138615497 138615555 -23984375 - L1MDb LINE L1 -3310 3096 3039 1735 210 127 60 chrX 138615555 138615749 -23984181 + MLT1E2 LTR MaLR 1 181 -445 2220 99 3 0 chrX 138615749 138616042 -23983888 + AluSq SINE Alu 2 295 -18 1735 210 127 60 chrX 138616042 138616292 -23983638 + MLT1E2 LTR MaLR 181 496 -130 2260 101 7 0 chrX 138616292 138616588 -23983342 + AluSp SINE Alu 1 298 -15 1735 210 127 60 chrX 138616588 138616727 -23983203 + MLT1E2 LTR MaLR 496 624 -2 3461 215 47 47 chrX 138616727 138617436 -23982494 - L1MDb LINE L1 -3367 3039 2331 2415 96 0 0 chrX 138617436 138617748 -23982182 - AluSx SINE Alu 0 312 1 3461 215 47 47 chrX 138617748 138618526 -23981404 - L1MDb LINE L1 -4075 2331 1554 2362 87 3 0 chrX 138618526 138618824 -23981106 + AluSx SINE Alu 1 299 -13 3461 215 47 47 chrX 138618824 138619047 -23980883 - L1MDb LINE L1 -4852 1554 1349 2013 69 0 4 chrX 138619047 138619293 -23980637 - AluY SINE Alu -66 245 1 3461 215 47 47 chrX 138619293 138619328 -23980602 - L1MDb LINE L1 -5057 1349 1315 2306 107 0 0 chrX 138619390 138619690 -23980240 - AluSg SINE Alu -10 300 1 2314 126 0 0 chrX 138619835 138620145 -23979785 - AluSx SINE Alu -2 310 1 2433 90 0 3 chrX 138621355 138621666 -23978264 + AluSq SINE Alu 1 310 -3 323 111 0 125 chrX 138621770 138621842 -23978088 + AluSp/q SINE Alu 230 292 -11 1222 112 6 0 chrX 138621944 138622113 -23977817 - AluSg/x SINE Alu -13 299 130 1750 113 41 38 chrX 138622962 138623254 -23976676 + AluSx SINE Alu 8 300 -12 286 240 80 53 chrX 138625499 138625649 -23974281 - MIR SINE MIR -3 259 106 185 299 30 0 chrX 138625774 138625841 -23974089 - L2 LINE L2 -3 3269 3201 2186 72 31 17 chrX 138625908 138626201 -23973729 + AluY SINE Alu 1 297 -14 639 133 145 54 chrX 138626236 138626262 -23973668 + MER53 DNA DNA 9 31 -158 2218 78 3 42 chrX 138626262 138626568 -23973362 + AluSx SINE Alu 1 294 -18 639 133 145 54 chrX 138626568 138626707 -23973223 + MER53 DNA DNA 31 189 0 21 0 0 0 chrX 138626728 138626749 -23973181 + AT_rich Low_complexity Low_complexity 1 21 0 351 289 59 55 chrX 138626827 138627083 -23972847 - L2 LINE L2 -214 3099 2843 336 289 77 61 chrX 138627101 138627255 -23972675 - L2 LINE L2 -646 2668 2518 2045 119 58 47 chrX 138627255 138627616 -23972314 + MLT1A1 LTR MaLR 1 365 0 336 289 77 61 chrX 138627616 138627772 -23972158 - L2 LINE L2 -796 2518 2353 205 250 50 30 chrX 138627775 138627875 -23972055 - L2 LINE L2 -1071 2243 2142 403 226 20 39 chrX 138627901 138628003 -23971927 + L1ME4a LINE L1 5956 6055 -66 2223 107 10 0 chrX 138628010 138628320 -23971610 - AluSq SINE Alu 0 313 1 2417 74 3 0 chrX 138629107 138629403 -23970527 - AluSq SINE Alu -16 297 1 291 308 6 19 chrX 138629416 138629572 -23970358 - L2 LINE L2 -575 2739 2586 1990 104 60 7 chrX 138629940 138630264 -23969666 - AluSx SINE Alu 0 338 1 2548 71 7 0 chrX 138630411 138630720 -23969210 + AluY SINE Alu 1 311 0 2153 121 0 0 chrX 138631209 138631498 -23968432 + AluSx SINE Alu 1 289 -23 2500 77 3 0 chrX 138631498 138631810 -23968120 + AluSp SINE Alu 1 313 0 246 242 67 67 chrX 138631814 138631992 -23967938 + L1P LINE L1 4871 5048 -1098 614 185 15 8 chrX 138632039 138632169 -23967761 - L2 LINE L2 0 3313 3183 250 182 0 0 chrX 138632169 138632213 -23967717 + MLT1A1 LTR MaLR 1 44 -321 2145 105 27 7 chrX 138632213 138632509 -23967421 - AluSx SINE Alu -10 302 1 1051 169 0 11 chrX 138632511 138632689 -23967241 - FRAM SINE Alu -3 173 1 949 156 12 29 chrX 138632689 138632862 -23967068 + MLT1A1 LTR MaLR 32 201 -164 709 155 83 88 chrX 138632877 138632956 -23966974 - LTR47A LTR ERVL 0 452 374 2560 70 0 3 chrX 138632956 138633268 -23966662 + AluY SINE Alu 1 311 0 709 155 83 88 chrX 138633268 138633302 -23966628 - LTR47A LTR ERVL -78 374 341 2226 130 3 0 chrX 138633302 138633609 -23966321 + AluSx SINE Alu 1 308 -4 709 155 83 88 chrX 138633609 138633687 -23966243 - LTR47A LTR ERVL -111 341 261 575 174 81 74 chrX 138633973 138634057 -23965873 + MLT1A1 LTR MaLR 214 301 -64 2437 67 3 3 chrX 138634057 138634355 -23965575 - AluSp SINE Alu -15 298 1 575 174 81 74 chrX 138634355 138634419 -23965511 + MLT1A1 LTR MaLR 301 363 -2 2300 101 0 0 chrX 138634607 138634895 -23965035 + AluSx SINE Alu 1 288 -24 2108 87 6 51 chrX 138634906 138635218 -23964712 + AluY SINE Alu 1 298 -13 1840 217 75 15 chrX 138635235 138635740 -23964190 - L2 LINE L2 -279 3034 2476 651 313 8 12 chrX 138635769 138636028 -23963902 + L2 LINE L2 2064 2321 -993 1029 334 32 41 chrX 138636043 138636648 -23963282 - L2 LINE L2 -4 3309 2714 2368 94 0 0 chrX 138636648 138636947 -23962983 - AluSx SINE Alu -13 299 1 1029 334 32 41 chrX 138636947 138637145 -23962785 - L2 LINE L2 -599 2714 2516 751 233 108 5 chrX 138637157 138637380 -23962550 + MIR SINE MIR 15 260 -2 834 115 18 0 chrX 138637395 138637508 -23962422 + FLAM_C SINE Alu 1 115 -28 21 0 0 0 chrX 138637508 138637529 -23962401 + AT_rich Low_complexity Low_complexity 1 21 0 190 264 111 0 chrX 138637529 138637601 -23962329 - L2 LINE L2 -806 2508 2429 726 342 20 59 chrX 138637719 138638029 -23961901 + L2 LINE L2 1218 1538 -1776 793 159 25 90 chrX 138638029 138638230 -23961700 + MER5A DNA MER1_type 2 189 0 726 342 20 59 chrX 138638230 138638306 -23961624 + L2 LINE L2 1538 1615 -1699 2009 117 53 0 chrX 138638306 138638588 -23961342 - AluSg SINE Alu -13 297 1 726 342 20 59 chrX 138638588 138638797 -23961133 + L2 LINE L2 1615 1791 -1523 1833 138 17 0 chrX 138638797 138639088 -23960842 + L1MB1 LINE L1 5806 6101 -67 2034 108 0 31 chrX 138639089 138639377 -23960553 + AluSx SINE Alu 1 279 -33 248 0 31 0 chrX 138639378 138639410 -23960520 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 731 177 15 8 chrX 138639454 138639584 -23960346 - FLAM_A SINE Alu -2 131 1 2249 102 24 0 chrX 138639597 138639892 -23960038 - AluSq SINE Alu -11 302 1 331 291 0 8 chrX 138639997 138640114 -23959816 + L1MC/D LINE L1 5701 5816 -1992 215 170 19 19 chrX 138640157 138640210 -23959720 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 38 22 0 0 chrX 138640341 138640386 -23959544 + AT_rich Low_complexity Low_complexity 1 45 0 902 159 0 26 chrX 138640409 138640560 -23959370 - AluJo SINE Alu -161 151 5 380 331 0 0 chrX 138640652 138640794 -23959136 + L2 LINE L2 1783 1924 -1390 1227 128 22 0 chrX 138640811 138640990 -23958940 + AluJb SINE Alu 130 312 0 858 130 12 50 chrX 138640993 138641154 -23958776 - MLT1B LTR MaLR -235 155 1 213 39 0 0 chrX 138641336 138641362 -23958568 + (T)n Simple_repeat Simple_repeat 1 26 0 630 247 49 49 chrX 138641519 138641663 -23958267 - L1MB8 LINE L1 -1 6177 6034 317 78 281 31 chrX 138641663 138641686 -23958244 + MADE1 DNA Mariner 1 17 -63 1620 140 0 0 chrX 138641686 138641908 -23958022 + AluSx SINE Alu 1 222 -90 1935 149 0 0 chrX 138641908 138642189 -23957741 + AluSx SINE Alu 11 292 -20 317 78 281 31 chrX 138642189 138642228 -23957702 + MADE1 DNA Mariner 16 80 0 630 247 49 49 chrX 138642228 138642330 -23957600 - L1MB8 LINE L1 -143 6035 5931 738 173 0 16 chrX 138642330 138642457 -23957473 - FLAM_A SINE Alu -12 130 6 2335 102 0 6 chrX 138642470 138642785 -23957145 - AluSq SINE Alu 0 313 1 2609 194 42 61 chrX 138642785 138642845 -23957085 - L1MB8 LINE L1 -249 5935 5875 2148 113 13 13 chrX 138642845 138643154 -23956776 - AluSx SINE Alu -3 309 1 2609 194 42 61 chrX 138643154 138643269 -23956661 - L1MB8 LINE L1 -309 5875 5759 2911 47 0 0 chrX 138643269 138643613 -23956317 + LTR14A LTR ERVK 1 344 0 2609 194 42 61 chrX 138643613 138644207 -23955723 - L1MB8 LINE L1 -425 5759 5155 2419 68 0 37 chrX 138644207 138644530 -23955400 - AluY SINE Alu 0 311 1 2337 95 0 3 chrX 138644534 138644838 -23955092 - AluSq SINE Alu -8 305 3 2609 194 42 61 chrX 138644838 138645038 -23954892 - L1MB8 LINE L1 -1032 5152 4991 2197 123 0 0 chrX 138645038 138645346 -23954584 - AluSx SINE Alu -4 308 1 2609 194 42 61 chrX 138645346 138645570 -23954360 - L1MB8 LINE L1 -1193 4991 4764 2263 106 0 0 chrX 138645570 138645862 -23954068 - AluSx SINE Alu -20 292 1 2197 123 0 10 chrX 138645862 138646164 -23953766 - AluSx SINE Alu -13 299 1 1200 54 0 13 chrX 138646299 138646448 -23953482 - AluSg/x SINE Alu -2 310 164 1965 111 0 7 chrX 138646508 138646778 -23953152 + AluSx SINE Alu 1 268 -44 822 101 23 8 chrX 138646778 138646907 -23953023 - L1MD3 LINE L1 -145 7850 7720 1957 133 41 3 chrX 138647337 138647631 -23952299 - AluSx SINE Alu -7 305 1 2385 103 0 3 chrX 138647642 138647953 -23951977 - AluSx SINE Alu -2 310 1 2287 115 0 0 chrX 138648143 138648439 -23951491 - AluSx SINE Alu -16 296 1 293 211 0 0 chrX 138648565 138648617 -23951313 + LTR30 LTR ERV1 1 52 -670 2421 140 90 35 chrX 138648617 138648979 -23950951 + LTR12 LTR ERV1 55 399 -315 2123 86 35 14 chrX 138648979 138649269 -23950661 + AluY SINE Alu 1 296 -15 2421 140 90 35 chrX 138649269 138649376 -23950554 + LTR12 LTR ERV1 399 499 -215 2248 106 0 3 chrX 138649396 138649697 -23950233 - AluSg SINE Alu -10 300 1 330 306 35 28 chrX 138649703 138649847 -23950083 + MIR SINE MIR 47 191 -71 910 89 24 0 chrX 138649953 138650076 -23949854 + AluSx SINE Alu 1 126 -187 242 103 0 0 chrX 138650445 138650484 -23949446 + (C)n Simple_repeat Simple_repeat 1 39 0 854 198 11 21 chrX 138650615 138650802 -23949128 - AluSg SINE Alu -125 185 1 192 291 116 0 chrX 138650803 138650889 -23949041 + L2 LINE L2 855 950 -2364 849 225 100 5 chrX 138650897 138651275 -23948655 - L1ME LINE L1 -595 5575 5152 299 291 135 20 chrX 138651278 138651426 -23948504 - MLT1J LTR MaLR -60 451 287 4445 157 29 38 chrX 138651429 138651544 -23948386 + L1MB8 LINE L1 5066 5181 -1153 2895 80 5 8 chrX 138651544 138651920 -23948010 - THE1C LTR MaLR 0 375 1 4445 157 29 38 chrX 138651920 138652089 -23947841 + L1MB8 LINE L1 5181 5350 -984 1898 59 47 39 chrX 138652089 138652343 -23947587 - AluY SINE Alu -12 299 44 4445 157 29 38 chrX 138652343 138653139 -23946791 + L1MB8 LINE L1 5350 6296 -38 1274 153 0 0 chrX 138653133 138653329 -23946601 + L1MD2 LINE L1 5747 5942 -417 * 443 270 65 11 chrX 138654325 138654516 -23945414 + L1MC4a LINE L1 5743 5950 -171 787 178 108 0 chrX 138654522 138654679 -23945251 + AluSx SINE Alu 118 291 -19 248 246 0 0 chrX 138655055 138655116 -23944814 + L2 LINE L2 679 739 -2575 192 238 60 36 chrX 138655116 138655200 -23944730 - L2 LINE L2 -925 2389 2304 1136 208 0 4 chrX 138655445 138655681 -23944249 - L1P LINE L1 -856 5290 5056 762 133 30 44 chrX 138655681 138655816 -23944114 + L1PA15 LINE L1 6033 6165 0 1534 84 0 0 chrX 138655852 138656042 -23943888 + AluSx SINE Alu 1 190 -122 21 82 0 0 chrX 138656927 138656976 -23942954 + AT_rich Low_complexity Low_complexity 1 49 0 1703 201 131 44 chrX 138656979 138657330 -23942600 - MLT1D LTR MaLR 0 505 103 1902 162 0 3 chrX 138657330 138657626 -23942304 + AluJb SINE Alu 1 295 -17 1703 201 131 44 chrX 138657626 138657732 -23942198 - MLT1D LTR MaLR -402 103 8 32 67 0 0 chrX 138657757 138657817 -23942113 + AT_rich Low_complexity Low_complexity 1 60 0 1882 151 13 13 chrX 138657954 138658258 -23941672 + AluJb SINE Alu 1 304 -8 23 0 0 0 chrX 138658524 138658547 -23941383 + AT_rich Low_complexity Low_complexity 1 23 0 2303 267 92 36 chrX 138658776 138659594 -23940336 + L2 LINE L2 1992 2763 -550 6138 108 20 0 chrX 138659594 138660711 -23939219 - L1PA13 LINE L1 0 6163 5039 2303 267 92 36 chrX 138660711 138660790 -23939140 + L2 LINE L2 2763 2836 -477 2155 109 10 29 chrX 138660790 138661102 -23938828 - AluSx SINE Alu -6 306 1 2303 267 92 36 chrX 138661102 138661394 -23938536 + L2 LINE L2 2836 3311 -2 233 208 0 0 chrX 138661628 138661676 -23938254 + L1ME4a LINE L1 5957 6004 -117 1209 247 43 0 chrX 138661677 138661956 -23937974 + L1ME3 LINE L1 5822 6112 -50 2205 108 3 10 chrX 138661988 138662293 -23937637 + AluSg SINE Alu 1 303 -7 397 210 0 12 chrX 138662295 138662376 -23937554 + AluJ/FRAM SINE Alu 220 299 -3 232 261 0 0 chrX 138662382 138662451 -23937479 + L1ME4a LINE L1 5990 6058 -63 1036 183 0 0 chrX 138662455 138662624 -23937306 - AluSg/x SINE Alu -10 302 134 360 64 0 0 chrX 138662645 138662692 -23937238 + (CA)n Simple_repeat Simple_repeat 2 48 0 471 81 0 0 chrX 138662698 138662760 -23937170 - L1PA5 LINE L1 -7 6147 6086 185 245 20 0 chrX 138662932 138662981 -23936949 - L2 LINE L2 -666 2648 2599 360 359 63 22 chrX 138663098 138663413 -23936517 - L2 LINE L2 -818 2496 2169 228 216 20 0 chrX 138663419 138663470 -23936460 - MER5A DNA MER1_type -2 187 136 1368 82 11 0 chrX 138663480 138663662 -23936268 + L1PA8 LINE L1 5989 6172 0 250 270 17 52 chrX 138663718 138663833 -23936097 - MIR SINE MIR 0 262 152 1995 163 0 0 chrX 138664006 138664306 -23935624 + AluJb SINE Alu 1 300 -12 4083 194 39 75 chrX 138664504 138665421 -23934509 - L1ME2 LINE L1 -6 6158 5209 2030 119 37 42 chrX 138665421 138665632 -23934298 + L1MA3 LINE L1 5931 6141 -164 1814 161 21 0 chrX 138665632 138665912 -23934018 + AluJo SINE Alu 1 286 -26 2030 119 37 42 chrX 138665912 138666077 -23933853 + L1MA3 LINE L1 6141 6305 0 4083 194 39 75 chrX 138666077 138666264 -23933666 - L1ME2 LINE L1 -955 5209 5017 2284 121 0 0 chrX 138666264 138666571 -23933359 + AluSx SINE Alu 1 307 -5 198 0 0 0 chrX 138666571 138666593 -23933337 + (GGAA)n Simple_repeat Simple_repeat 1 22 0 4083 194 39 75 chrX 138666593 138666802 -23933128 - L1ME2 LINE L1 -1145 5019 4871 554 275 48 72 chrX 138666811 138667092 -23932838 - L1M2 LINE L1 -685 5606 5332 2099 137 3 3 chrX 138667092 138667392 -23932538 - AluSx SINE Alu -12 300 1 554 275 48 72 chrX 138667392 138667547 -23932383 - L1M2 LINE L1 -959 5332 5175 320 284 37 9 chrX 138667645 138667754 -23932176 - LTR67 LTR ERVL 0 557 446 3068 195 40 7 chrX 138667755 138668706 -23931224 - L1MD2 LINE L1 -522 5837 4853 827 142 0 15 chrX 138668713 138668847 -23931083 + FLAM_C SINE Alu 2 133 0 1212 167 163 17 chrX 138668871 138669283 -23930647 - LTR28 LTR ERV1 -492 528 6 1694 175 47 24 chrX 138669283 138669665 -23930265 + L1MB7 LINE L1 5784 6174 -10 23 33 0 0 chrX 138669668 138669698 -23930232 + AT_rich Low_complexity Low_complexity 1 30 0 519 284 107 40 chrX 138669729 138670179 -23929751 + L1M4 LINE L1 4675 5154 -992 365 284 52 0 chrX 138670217 138670333 -23929597 + LTR16A1 LTR ERVL 23 144 -313 710 141 41 0 chrX 138670338 138670459 -23929471 - MLT1D LTR MaLR -2 503 378 872 220 22 28 chrX 138670462 138670514 -23929416 + MLT1A1 LTR MaLR 185 236 -129 4095 94 9 2 chrX 138670514 138671064 -23928866 + MER41A LTR ERV1 1 554 0 872 220 22 28 chrX 138671064 138671193 -23928737 + MLT1A1 LTR MaLR 236 365 0 2184 180 7 20 chrX 138671207 138671613 -23928317 - MER67C LTR ERV1 -309 401 1 2176 142 3 0 chrX 138673477 138673788 -23926142 - AluJo SINE Alu 0 312 1 571 149 9 70 chrX 138674388 138674502 -23925428 + AluSg/x SINE Alu 181 287 -23 270 296 38 48 chrX 138674912 138675098 -23924832 - HERVS71 LTR ERV1 -2331 6647 6464 2279 57 0 3 chrX 138675243 138675526 -23924404 - L1PA8 LINE L1 -2 6170 5889 876 141 0 0 chrX 138675549 138675684 -23924246 - L1MB1 LINE L1 -1 6167 6033 2323 117 0 0 chrX 138676188 138676497 -23923433 + AluSx SINE Alu 1 309 -3 24 53 0 0 chrX 138676665 138676703 -23923227 + AT_rich Low_complexity Low_complexity 1 38 0 2011 163 39 17 chrX 138677113 138677470 -23922460 - MLT1A1 LTR MaLR 0 365 1 631 201 13 6 chrX 138677856 138678015 -23921915 + GA-rich Low_complexity Low_complexity 3 162 0 1773 162 0 24 chrX 138678256 138678552 -23921378 - AluJb SINE Alu 0 312 24 1582 182 3 36 chrX 138678691 138679054 -23920876 - L1M4 LINE L1 -790 5356 5006 1295 193 129 39 chrX 138680488 138680851 -23919079 - MSTD LTR MaLR 0 396 1 204 222 0 48 chrX 138681160 138681223 -23918707 + GA-rich Low_complexity Low_complexity 3 62 0 586 74 12 0 chrX 138681294 138681375 -23918555 - AluSp SINE Alu -12 301 220 1240 93 6 0 chrX 138681377 138681538 -23918392 - AluSp SINE Alu -151 162 1 615 126 42 0 chrX 138681552 138681647 -23918283 - HY3 scRNA scRNA -2 99 1 3374 155 22 6 chrX 138682121 138682668 -23917262 - MER67C LTR ERV1 0 710 155 10922 107 42 11 chrX 138682718 138682995 -23916935 - Tigger2 DNA MER2_type -1 2717 2450 2238 108 3 10 chrX 138682995 138683309 -23916621 + AluSx SINE Alu 1 312 0 10922 107 42 11 chrX 138683309 138684632 -23915298 - Tigger2 DNA MER2_type -268 2450 1068 2293 102 10 0 chrX 138684632 138684926 -23915004 - AluSx SINE Alu -15 297 1 2155 117 41 0 chrX 138684937 138685228 -23914702 - AluSx SINE Alu -9 303 1 3722 131 5 81 chrX 138685228 138685396 -23914534 - Tigger2 DNA MER2_type -1831 887 708 2458 83 0 0 chrX 138685396 138685698 -23914232 + AluY SINE Alu 2 303 -8 3722 131 5 81 chrX 138685698 138686195 -23913735 - Tigger2 DNA MER2_type -2010 708 273 1209 180 10 0 chrX 138686200 138686400 -23913530 - MSTA LTR MaLR -226 202 1 6271 318 50 55 chrX 138686419 138687275 -23912655 + ERVL LTR ERVL 456 1315 -4449 2035 122 7 0 chrX 138687275 138687553 -23912377 + AluSx SINE Alu 1 280 -32 284 0 28 0 chrX 138687553 138687589 -23912341 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 6271 318 50 55 chrX 138687589 138687602 -23912328 + ERVL LTR ERVL 1314 1326 -4438 817 168 8 0 chrX 138687602 138687733 -23912197 + FLAM_C SINE Alu 2 133 0 6271 318 50 55 chrX 138687733 138688733 -23911197 + ERVL LTR ERVL 1326 2329 -3435 2168 129 0 0 chrX 138688733 138689020 -23910910 + AluSx SINE Alu 1 287 -25 6271 318 50 55 chrX 138689020 138689960 -23909970 + ERVL LTR ERVL 2329 3272 -2492 2325 98 0 0 chrX 138689960 138690256 -23909674 - AluSx SINE Alu -16 296 1 6271 318 50 55 chrX 138690256 138691523 -23908407 + ERVL LTR ERVL 3272 4642 -1122 2310 94 0 13 chrX 138691523 138691821 -23908109 + AluSq SINE Alu 1 294 -19 6271 318 50 55 chrX 138691821 138691905 -23908025 + ERVL LTR ERVL 4642 4725 -1039 2396 157 0 0 chrX 138691905 138692262 -23907668 + MER47B DNA MER2_type 1 357 -61 1324 199 0 0 chrX 138692288 138692509 -23907421 + MER58A DNA MER1_type 1 221 -3 1211 314 27 27 chrX 138692512 138693113 -23906817 + ERVL LTR ERVL 4687 5287 -367 737 236 104 86 chrX 138693297 138693729 -23906201 + LTR16A1 LTR ERVL 1 440 -17 714 303 15 42 chrX 138693977 138694238 -23905692 - LTR16A1 LTR ERVL 0 457 204 2127 141 0 6 chrX 138694432 138694745 -23905185 + AluSx SINE Alu 1 311 -1 3292 186 90 7 chrX 138694849 138695585 -23904345 - L1MB8 LINE L1 -1 6413 5617 834 225 63 24 chrX 138695591 138695844 -23904086 - L1MB7 LINE L1 -1 6183 5921 2110 143 13 0 chrX 138695848 138696155 -23903775 + AluSx SINE Alu 1 311 -1 1464 224 85 65 chrX 138696191 138696469 -23903461 - L1MB8 LINE L1 -3568 2814 2543 2122 125 16 16 chrX 138696469 138696781 -23903149 - AluSx SINE Alu 0 312 1 1464 224 85 65 chrX 138696781 138697270 -23902660 - L1MB8 LINE L1 -3839 2543 2065 2174 110 3 32 chrX 138697270 138697580 -23902350 + AluSx SINE Alu 1 301 -11 1464 224 85 65 chrX 138697580 138697709 -23902221 - L1MB8 LINE L1 -4317 2065 1940 8236 114 12 52 chrX 138697709 138697761 -23902169 - HSMAR2 DNA Mariner -2 1300 1247 2402 97 0 0 chrX 138697761 138698061 -23901869 + AluSq SINE Alu 1 300 -13 8236 114 12 52 chrX 138698061 138699042 -23900888 - HSMAR2 DNA Mariner -55 1247 332 2050 139 14 0 chrX 138699042 138699336 -23900594 + AluJb SINE Alu 2 299 -13 8236 114 12 52 chrX 138699336 138699653 -23900277 - HSMAR2 DNA Mariner -970 332 4 1464 224 85 65 chrX 138699653 138700023 -23899907 - L1MB8 LINE L1 -4442 1940 1520 1954 195 58 2 chrX 138700024 138700419 -23899511 - L1MD2 LINE L1 -240 6119 5703 959 151 13 7 chrX 138700422 138700574 -23899356 + AluSq SINE Alu 1 153 -160 422 129 0 43 chrX 138700574 138700644 -23899286 + AluSg/x SINE Alu 214 280 -32 267 103 0 0 chrX 138700645 138700684 -23899246 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 1261 106 67 0 chrX 138700837 138701045 -23898885 + L1P5 LINE L1 5254 5475 -679 2005 118 33 20 chrX 138701061 138701367 -23898563 - AluSg SINE Alu 0 310 1 246 289 0 0 chrX 138701404 138701456 -23898474 + L1M4 LINE L1 3796 3847 -2299 2105 134 0 7 chrX 138701460 138701759 -23898171 + AluSx SINE Alu 1 297 -15 271 294 0 0 chrX 138701872 138701940 -23897990 + MER113 DNA MER1_type? 454 521 0 1885 114 9 67 chrX 138702261 138702576 -23897354 + AluSc SINE Alu 1 297 -12 936 157 10 3 chrX 138702643 138702937 -23896993 + CT-rich Low_complexity Low_complexity 1 296 0 2018 114 4 0 chrX 138702938 138703210 -23896720 - AluJb SINE Alu -39 273 1 21 36 0 0 chrX 138703210 138703238 -23896692 + AT_rich Low_complexity Low_complexity 1 28 0 2079 114 34 7 chrX 138703332 138703630 -23896300 + AluSx SINE Alu 1 306 -6 1033 138 63 0 chrX 138703680 138703839 -23896091 + Charlie1 DNA MER1_type 7 175 -2586 1097 116 0 0 chrX 138703841 138703988 -23895942 + AluSg/x SINE Alu 163 309 -3 2229 83 0 38 chrX 138704164 138704477 -23895453 - AluY SINE Alu -6 305 5 2234 88 7 27 chrX 138704481 138704775 -23895155 - AluSq SINE Alu -21 292 5 468 303 61 21 chrX 138705151 138705311 -23894619 + L1MC/D LINE L1 5282 5434 -687 2300 104 0 0 chrX 138705311 138705608 -23894322 - AluSg SINE Alu -13 297 1 468 303 61 21 chrX 138705608 138705748 -23894182 + L1MC/D LINE L1 5434 5595 -526 204 40 0 0 chrX 138705809 138705834 -23894096 + (TA)n Simple_repeat Simple_repeat 1 25 0 265 258 65 0 chrX 138705847 138705909 -23894021 + L1MC/D LINE L1 5600 5665 -2143 1964 138 0 22 chrX 138706068 138706379 -23893551 - AluSx SINE Alu -8 304 1 2478 58 10 0 chrX 138706589 138706884 -23893046 - AluY SINE Alu -13 298 1 8023 124 156 29 chrX 138707021 138708528 -23891402 + pTR5 LTR ERV1 741 2438 0 22 0 0 0 chrX 138708706 138708728 -23891202 + AT_rich Low_complexity Low_complexity 1 22 0 21 53 0 35 chrX 138708826 138708863 -23891067 + AT_rich Low_complexity Low_complexity 1 37 -18 2085 140 0 7 chrX 138708863 138709170 -23890760 - AluSx SINE Alu -7 305 1 21 53 0 35 chrX 138709170 138709189 -23890741 + AT_rich Low_complexity Low_complexity 37 55 0 964 105 161 0 chrX 138709301 138709444 -23890486 + AluSc SINE Alu 124 289 -20 425 229 21 0 chrX 138709461 138709557 -23890373 + MIR SINE MIR 165 262 0 418 179 0 0 chrX 138709628 138709695 -23890235 - FLAM SINE Alu -21 122 56 290 303 71 50 chrX 138709784 138709982 -23889948 - L1ME3A LINE L1 -7 6163 5962 2153 131 3 0 chrX 138710048 138710345 -23889585 - AluSx SINE Alu -14 298 1 1946 149 10 7 chrX 138710426 138710727 -23889203 + AluJo SINE Alu 1 302 -10 557 192 135 26 chrX 138710845 138711038 -23888892 - L1MC5 LINE L1 -581 7380 7167 799 199 41 6 chrX 138711072 138711243 -23888687 - LTR41 LTR ERVL -596 177 1 1244 226 38 41 chrX 138711276 138711644 -23888286 - L1MEc LINE L1 -5994 402 36 2080 124 0 0 chrX 138711678 138711987 -23887943 - AluSq SINE Alu 0 309 1 447 137 63 32 chrX 138712007 138712102 -23887828 - L1MA8 LINE L1 0 6291 6194 2261 109 7 0 chrX 138712104 138712407 -23887523 - AluSp SINE Alu -8 305 1 2195 123 0 0 chrX 138712515 138712808 -23887122 - AluSg SINE Alu -17 293 1 2204 109 13 19 chrX 138712819 138713132 -23886798 - AluSx SINE Alu -1 311 1 293 270 196 9 chrX 138713226 138713456 -23886474 - L1MEd LINE L1 -4863 1256 984 2275 113 3 3 chrX 138713456 138713767 -23886163 - AluSx SINE Alu -1 311 1 573 312 59 80 chrX 138713772 138714164 -23885766 - L1MEd LINE L1 -5237 882 483 1923 129 56 0 chrX 138714164 138714451 -23885479 - AluSx SINE Alu -9 303 1 573 312 59 80 chrX 138714451 138714911 -23885019 - L1MEd LINE L1 -5636 483 48 1556 150 117 4 chrX 138715130 138715396 -23884534 - AluJb SINE Alu -16 296 1 2397 61 7 3 chrX 138715426 138715720 -23884210 - AluY SINE Alu -16 295 1 1034 155 17 39 chrX 138715728 138715909 -23884021 - AluJb SINE Alu 0 312 136 1148 81 0 0 chrX 138716029 138716165 -23883765 + AluSq/x SINE Alu 1 136 -177 2319 106 0 0 chrX 138716165 138716458 -23883472 + AluSq SINE Alu 1 293 -20 351 234 0 0 chrX 138716462 138716564 -23883366 + (TA)n Simple_repeat Simple_repeat 1 124 0 22 0 0 0 chrX 138716564 138716586 -23883344 + AT_rich Low_complexity Low_complexity 1 22 0 1650 202 57 49 chrX 138716616 138717022 -23882908 - LTR2 LTR ERV1 0 449 41 2005 209 9 31 chrX 138717097 138717832 -23882098 - HERVE LTR ERV1 -2 7811 7012 6306 207 29 11 chrX 138717888 138719047 -23880883 - HERVE LTR ERV1 -2113 6313 5135 509 244 32 24 chrX 138719019 138719142 -23880788 - HERVE LTR ERV1 -4602 3824 3701 * 1985 254 8 0 chrX 138719141 138719539 -23880391 - HERVE LTR ERV1 -5957 2469 2069 1848 225 55 3 chrX 138719787 138720134 -23879796 - HERVE LTR ERV1 -6341 2085 1721 1966 111 103 95 chrX 138720143 138720532 -23879398 - HERVE LTR ERV1 -3492 4321 3930 * 4046 211 25 9 chrX 138720503 138721252 -23878678 - HERVE LTR ERV1 -6945 1481 721 940 181 153 39 chrX 138721253 138721507 -23878423 - HERVE LTR ERV1 -6284 612 330 2986 109 2 16 chrX 138721511 138721943 -23877987 - HERVE LTR ERV1 -6470 426 1 1774 207 41 46 chrX 138721943 138722354 -23877576 - LTR2 LTR ERV1 0 449 41 595 299 49 53 chrX 138722674 138722865 -23877065 - MIR SINE MIR -17 245 55 2157 119 3 10 chrX 138722865 138723176 -23876754 - AluSg SINE Alu -1 309 1 2085 115 7 17 chrX 138723176 138723471 -23876459 - AluSx SINE Alu -20 292 1 595 299 49 53 chrX 138723471 138723523 -23876407 - MIR SINE MIR -502 4294967056 3 312 250 56 9 chrX 138723576 138723684 -23876246 - L1MC/D LINE L1 -1999 5809 5697 2207 118 0 0 chrX 138723894 138724190 -23875740 - AluSx SINE Alu -15 297 2 540 94 375 0 chrX 138724212 138724308 -23875622 - AluSg1 SINE Alu -177 132 1 442 266 40 70 chrX 138724343 138724476 -23875454 - MIR SINE MIR -1 261 134 2507 68 7 0 chrX 138724476 138724784 -23875146 + AluY SINE Alu 2 311 0 442 266 40 70 chrX 138724784 138724849 -23875081 - MIR SINE MIR -128 134 69 207 0 0 0 chrX 138724865 138724888 -23875042 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 333 0 0 0 chrX 138724887 138724924 -23875006 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 498 17 0 0 chrX 138724923 138724982 -23874948 + (GA)n Simple_repeat Simple_repeat 2 60 0 1715 156 4 11 chrX 138724984 138725260 -23874670 - AluJo SINE Alu -38 274 1 2110 182 36 65 chrX 138725288 138725354 -23874576 - MLT1C LTR MaLR -3 464 398 2380 93 0 0 chrX 138725354 138725664 -23874266 + AluSg SINE Alu 1 310 0 2110 182 36 65 chrX 138725664 138725878 -23874052 - MLT1C LTR MaLR -69 398 201 2196 128 3 0 chrX 138725878 138726182 -23873748 - AluSq SINE Alu -8 305 1 2110 182 36 65 chrX 138726182 138726378 -23873552 - MLT1C LTR MaLR -266 201 1 2218 109 10 0 chrX 138726491 138726784 -23873146 - AluSp SINE Alu -17 296 1 342 270 146 0 chrX 138726790 138726879 -23873051 + MER5A DNA MER1_type 2 103 -86 2308 80 0 32 chrX 138727070 138727382 -23872548 + AluSx SINE Alu 2 303 -9 2246 253 136 32 chrX 138728010 138728031 -23871899 + L2 LINE L2 1968 1985 -1329 2008 139 0 13 chrX 138728031 138728340 -23871590 - AluJo SINE Alu -6 306 2 2246 253 136 32 chrX 138728340 138728628 -23871302 + L2 LINE L2 1985 2242 -1072 2007 128 0 71 chrX 138728628 138728964 -23870966 - AluSx SINE Alu 0 312 1 2246 253 136 32 chrX 138728964 138729413 -23870517 + L2 LINE L2 2242 2806 -508 2243 98 0 0 chrX 138729734 138730020 -23869910 + AluSx SINE Alu 1 286 -26 23 33 0 0 chrX 138730034 138730064 -23869866 + AT_rich Low_complexity Low_complexity 1 30 0 220 220 20 0 chrX 138730084 138730134 -23869796 - L2 LINE L2 0 3272 3222 270 0 0 0 chrX 138730884 138730904 -23869026 + (TG)n Simple_repeat Simple_repeat 1 50 0 270 0 0 0 chrX 138730904 138730934 -23868996 + (TG)n Simple_repeat Simple_repeat 2 31 0 2135 113 3 20 chrX 138730949 138731250 -23868680 - AluSx SINE Alu -16 296 1 480 292 35 7 chrX 138731522 138731666 -23868264 - MIR SINE MIR -113 149 2 2228 113 7 0 chrX 138731933 138732235 -23867695 + AluSx SINE Alu 1 304 -8 2395 91 0 0 chrX 138732526 138732824 -23867106 + AluSx SINE Alu 1 298 -14 695 246 87 10 chrX 138733006 138733201 -23866729 + MIR SINE MIR 36 245 -17 27 29 0 0 chrX 138733969 138734003 -23865927 + AT_rich Low_complexity Low_complexity 1 34 0 293 269 31 56 chrX 138734049 138734209 -23865721 - MER103 DNA DNA -7 159 4 1682 139 10 21 chrX 138734232 138734520 -23865410 - AluSx SINE Alu -3 309 25 801 188 0 0 chrX 138734543 138734671 -23865259 - AluSq/x SINE Alu -185 128 1 2927 6 0 0 chrX 138734865 138735178 -23864752 + AluYb8 SINE Alu 1 313 -5 358 257 34 27 chrX 138735257 138735405 -23864525 + L1MC4 LINE L1 7145 7293 -749 914 219 35 65 chrX 138735483 138735575 -23864355 - L1MC4a LINE L1 -1212 6596 6503 2906 7 0 0 chrX 138735575 138735885 -23864045 - AluYa5 SINE Alu -1 310 1 914 219 35 65 chrX 138735885 138736052 -23863878 - L1MC4a LINE L1 -1305 6503 6345 557 179 17 0 chrX 138736070 138736185 -23863745 - MER33 DNA MER1_type -259 65 1 1189 132 0 0 chrX 138736348 138736515 -23863415 - AluSg/x SINE Alu -11 301 135 2321 116 0 0 chrX 138736848 138737159 -23862771 - AluSx SINE Alu 0 312 2 2186 105 14 0 chrX 138737162 138737456 -23862474 - AluSx SINE Alu -14 298 1 2294 97 3 0 chrX 138737771 138738070 -23861860 - AluSq SINE Alu -13 300 1 1743 118 0 0 chrX 138738220 138738458 -23861472 + AluSx SINE Alu 61 298 -14 251 152 0 0 chrX 138738460 138738506 -23861424 + LTR66 LTR ERVL 394 439 -171 245 211 11 63 chrX 138738512 138738607 -23861323 - L1MC4 LINE L1 -1339 6703 6614 405 164 0 0 chrX 138738610 138738683 -23861247 + (TA)n Simple_repeat Simple_repeat 2 74 0 254 216 20 0 chrX 138738743 138738794 -23861136 + MIR3 SINE MIR 109 160 -48 2112 92 7 33 chrX 138738847 138739151 -23860779 - AluSg SINE Alu -14 296 1 1745 209 105 75 chrX 138739151 138739611 -23860319 - MER20B DNA MER1_type -26 757 273 1888 142 21 0 chrX 138739611 138739900 -23860030 + AluJb SINE Alu 1 295 -17 1745 209 105 75 chrX 138739900 138740050 -23859880 - MER20B DNA MER1_type -510 273 129 1946 143 3 0 chrX 138740198 138740499 -23859431 - AluJb SINE Alu -10 302 1 1379 241 189 18 chrX 138741220 138741814 -23858116 - L1MC3 LINE L1 0 8040 7359 26 30 0 0 chrX 138741865 138741898 -23858032 + AT_rich Low_complexity Low_complexity 1 33 0 1220 147 189 23 chrX 138741898 138742157 -23857773 + AluJb SINE Alu 1 302 0 2321 85 3 0 chrX 138742454 138742747 -23857183 - AluSp SINE Alu -19 294 1 908 192 0 0 chrX 138742899 138743055 -23856875 - AluJb SINE Alu -12 300 145 1845 192 0 0 chrX 138743094 138743402 -23856528 + AluJb SINE Alu 1 308 -4 475 236 129 18 chrX 138743752 138743977 -23855953 - L1MC4 LINE L1 -1888 5920 5671 2221 117 10 3 chrX 138744163 138744472 -23855458 + AluSx SINE Alu 1 311 -1 25 31 0 0 chrX 138744767 138744799 -23855131 + AT_rich Low_complexity Low_complexity 1 32 0 828 169 0 0 chrX 138745705 138745841 -23854089 + AluJb SINE Alu 1 136 -176 248 309 0 0 chrX 138745943 138746011 -23853919 + CT-rich Low_complexity Low_complexity 1 68 0 2122 131 0 3 chrX 138749452 138749750 -23850180 - AluSx SINE Alu -15 297 1 189 317 12 98 chrX 138749994 138750158 -23849772 - MIR3 SINE MIR -42 166 17 613 139 213 194 chrX 138750222 138750589 -23849341 - MLT1A2 LTR MaLR 0 374 1 1747 183 7 3 chrX 138751079 138751374 -23848556 - AluJo SINE Alu -16 296 1 2334 79 0 20 chrX 138751378 138751681 -23848249 - AluY SINE Alu -14 297 1 2490 82 0 0 chrX 138751813 138752118 -23847812 - AluSx SINE Alu -7 305 1 206 355 0 0 chrX 138752621 138752683 -23847247 - L2 LINE L2 -222 3050 2989 24 53 0 0 chrX 138752859 138752897 -23847033 + AT_rich Low_complexity Low_complexity 1 38 0 5976 199 50 51 chrX 138752951 138753539 -23846391 - L1ME1 LINE L1 -7 6159 5572 2155 102 48 0 chrX 138753539 138753833 -23846097 + AluSq SINE Alu 1 308 -5 5976 199 50 51 chrX 138753833 138754649 -23845281 - L1ME1 LINE L1 -594 5572 4757 2404 94 0 0 chrX 138754649 138754946 -23844984 - AluSx SINE Alu -13 299 3 5976 199 50 51 chrX 138754946 138755913 -23844017 - L1ME1 LINE L1 -1409 4757 3791 301 227 118 17 chrX 138756008 138756060 -23843870 - L1ME1 LINE L1 -2347 3799 3754 1906 193 11 82 chrX 138756060 138756510 -23843420 + MER47B DNA MER2_type 1 418 0 301 227 118 17 chrX 138756510 138756576 -23843354 - L1ME1 LINE L1 -2392 3754 3669 657 38 0 0 chrX 138756672 138756752 -23843178 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 1933 149 13 7 chrX 138756763 138757071 -23842859 - AluSx SINE Alu -2 310 1 1703 260 189 37 chrX 138757071 138757973 -23841957 - HAL1 LINE L1 -1452 1055 13 296 262 129 77 chrX 138758001 138758303 -23841627 - L1ME4a LINE L1 -2 6119 5785 1108 233 4 48 chrX 138758303 138758517 -23841413 - MIR SINE MIR -1 261 60 1809 161 0 16 chrX 138758517 138758821 -23841109 + AluJb SINE Alu 1 299 -13 1108 233 4 48 chrX 138758821 138758876 -23841054 - MIR SINE MIR -202 60 4 296 262 129 77 chrX 138758876 138759016 -23840914 - L1ME4a LINE L1 -336 5785 5654 2338 95 3 0 chrX 138759242 138759538 -23840392 - AluSq SINE Alu -16 297 1 235 221 13 13 chrX 138759693 138759770 -23840160 + CT-rich Low_complexity Low_complexity 2 78 0 783 149 7 7 chrX 138759988 138760129 -23839801 - L1MB7 LINE L1 -19 6401 6261 1688 74 46 0 chrX 138760131 138760347 -23839583 + L1PA10 LINE L1 5941 6166 -2 2911 170 37 43 chrX 138760347 138760667 -23839263 - L1MB7 LINE L1 -150 6270 5954 1931 117 62 0 chrX 138760667 138760941 -23838989 - AluSg SINE Alu -19 291 1 2911 170 37 43 chrX 138760941 138761221 -23838709 - L1MB7 LINE L1 -466 5954 5674 221 250 0 0 chrX 138761803 138761867 -23838063 + A-rich Low_complexity Low_complexity 1 64 0 2349 85 7 3 chrX 138762250 138762555 -23837375 - AluY SINE Alu -5 306 1 34295 51 5 4 chrX 138762905 138769048 -23830882 - L1PA5 LINE L1 0 6154 1 3562 210 44 27 chrX 138771532 138772333 -23827597 - L1MB7 LINE L1 -737 5673 4887 802 180 0 8 chrX 138772333 138772461 -23827469 + FLAM_A SINE Alu 1 127 -6 3562 210 44 27 chrX 138772461 138773115 -23826815 - L1MB7 LINE L1 -1523 4887 4245 204 40 0 0 chrX 138773115 138773140 -23826790 + (CA)n Simple_repeat Simple_repeat 2 26 0 3562 210 44 27 chrX 138773140 138773704 -23826226 - L1MB7 LINE L1 -2165 4245 1946 857 276 0 0 chrX 138773710 138773895 -23826035 + MIR SINE MIR 74 258 -4 210 37 0 0 chrX 138773965 138773992 -23825938 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2096 105 11 0 chrX 138773995 138774272 -23825658 - AluSx SINE Alu -32 280 1 436 305 37 37 chrX 138774395 138774559 -23825371 + L2 LINE L2 3109 3272 0 498 154 13 0 chrX 138774802 138774880 -23825050 + MADE1 DNA Mariner 1 79 -1 189 247 59 35 chrX 138775059 138775144 -23824786 + MIR SINE MIR 52 138 -124 320 265 143 32 chrX 138775244 138775433 -23824497 + L2 LINE L2 3101 3310 -3 180 262 16 33 chrX 138775442 138775503 -23824427 + MIR3 SINE MIR 146 205 -3 1904 151 17 0 chrX 138776394 138776686 -23823244 - AluSx SINE Alu -13 299 3 340 224 26 78 chrX 138776799 138776915 -23823015 + MIR SINE MIR 5 114 -148 863 227 80 30 chrX 138776934 138777234 -23822696 - HAL1 LINE L1 -1248 1259 945 1874 233 26 17 chrX 138777245 138777708 -23822222 - HAL1 LINE L1 -2040 467 1 308 121 15 30 chrX 138777720 138777786 -23822144 - L1PA16 LINE L1 0 6166 6102 1317 240 21 4 chrX 138778591 138778870 -23821060 + AluJo SINE Alu 6 289 -23 24 0 0 0 chrX 138778922 138778946 -23820984 + AT_rich Low_complexity Low_complexity 1 24 0 1932 127 3 14 chrX 138778946 138779238 -23820692 - L1MA5A LINE L1 -7 6290 6002 1594 174 16 10 chrX 138780111 138780422 -23819508 + MER33 DNA MER1_type 12 324 0 1783 51 0 5 chrX 138780959 138781174 -23818756 - L1MA2 LINE L1 0 6304 6091 2295 119 0 0 chrX 138781233 138781545 -23818385 + AluSx SINE Alu 1 312 0 1644 112 0 25 chrX 138781678 138781919 -23818011 - AluSg/x SINE Alu 0 310 76 1525 136 19 91 chrX 138782096 138782217 -23817713 + AluJo SINE Alu 1 129 -183 186 43 0 0 chrX 138782217 138782240 -23817690 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1525 136 19 91 chrX 138782240 138782426 -23817504 + AluJo SINE Alu 129 286 -26 1921 146 0 29 chrX 138783476 138783784 -23816146 - AluSx SINE Alu -13 299 1 2768 71 44 0 chrX 138784188 138784528 -23815402 - THE1A LTR MaLR 0 355 1 1999 213 61 61 chrX 138784643 138785126 -23814804 - MER68 LTR ERV1 -6 556 74 6852 55 5 62 chrX 138785126 138786834 -23813096 - SVA Other Other -683 1386 53 369 43 0 0 chrX 138786834 138786881 -23813049 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 1999 213 61 61 chrX 138786881 138786949 -23812981 - MER68 LTR ERV1 -486 76 2 2056 139 79 26 chrX 138786965 138787345 -23812585 - HERVL68 LTR ERVL -20 3017 2618 732 226 63 5 chrX 138788616 138788806 -23811124 - L1ME3A LINE L1 -5 6165 5965 2832 82 27 5 chrX 138790062 138790429 -23809501 - THE1C LTR MaLR 0 375 1 17680 88 15 1 chrX 138790615 138793789 -23806141 + L1PA7 LINE L1 2925 6154 0 2325 92 0 3 chrX 138793822 138794117 -23805813 - AluSc SINE Alu -15 294 1 494 238 41 25 chrX 138794137 138794259 -23805671 - L2 LINE L2 -10 3303 3180 322 298 37 89 chrX 138794306 138794464 -23805466 - L2 LINE L2 -287 2985 2855 1711 160 31 14 chrX 138794464 138794758 -23805172 + AluJb SINE Alu 1 299 -13 322 298 37 89 chrX 138794758 138794878 -23805052 - L2 LINE L2 -417 2855 2730 1662 182 20 17 chrX 138794885 138795187 -23804743 + AluJb SINE Alu 1 303 -9 2407 70 0 0 chrX 138795370 138795669 -23804261 - AluY SINE Alu -11 300 2 197 242 0 113 chrX 138795689 138795751 -23804179 + L2 LINE L2 3139 3193 -79 2138 112 0 3 chrX 138796365 138796659 -23803271 - AluSx SINE Alu -13 299 7 269 222 25 37 chrX 138796843 138796924 -23803006 - L1ME LINE L1 -450 5671 5592 1002 115 0 28 chrX 138797278 138797460 -23802470 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 300 111 0 0 chrX 138797462 138797507 -23802423 + (TC)n Simple_repeat Simple_repeat 1 45 0 1960 113 11 3 chrX 138797508 138797791 -23802139 - AluSx SINE Alu -6 306 22 2105 127 17 0 chrX 138798005 138798297 -23801633 + AluSx SINE Alu 1 297 -15 1121 199 37 23 chrX 138798406 138798622 -23801308 + MER20 DNA MER1_type 1 219 0 434 254 49 41 chrX 138799275 138799397 -23800533 - MIR SINE MIR -122 140 18 490 299 75 14 chrX 138800150 138800360 -23799570 + MIR SINE MIR 38 261 -1 190 354 92 8 chrX 138800364 138800494 -23799436 + L2 LINE L2 2694 2834 -480 21 0 0 0 chrX 138800509 138800530 -23799400 + AT_rich Low_complexity Low_complexity 1 21 0 2296 81 19 3 chrX 138800530 138800838 -23799092 + AluSq SINE Alu 1 313 0 743 195 0 0 chrX 138800840 138800963 -23798967 - FRAM SINE Alu -36 140 18 549 213 0 63 chrX 138801193 138801320 -23798610 - L2 LINE L2 0 3313 3195 366 283 87 113 chrX 138801342 138801572 -23798358 - L2 LINE L2 -5 3267 3044 1906 157 0 17 chrX 138801825 138802124 -23797806 - AluJo SINE Alu -18 294 1 296 320 108 43 chrX 138802300 138802331 -23797599 - L2 LINE L2 -529 2785 2757 2296 97 0 7 chrX 138802331 138802631 -23797299 - AluSx SINE Alu -14 298 1 296 320 108 43 chrX 138802631 138802924 -23797006 - L2 LINE L2 -557 2757 2440 291 196 0 0 chrX 138803240 138803291 -23796639 - FLAM_A SINE Alu -10 123 73 255 184 0 0 chrX 138803279 138803328 -23796602 - FRAM/FAM SINE Alu -114 52 4 * 2398 78 0 0 chrX 138803641 138803934 -23795996 + AluSc SINE Alu 1 293 -16 797 179 22 0 chrX 138804195 138804329 -23795601 + MER5B DNA MER1_type 39 175 -3 244 294 191 21 chrX 138804388 138804582 -23795348 - MIR SINE MIR 0 262 36 467 247 109 13 chrX 138804798 138804966 -23794964 - MIR SINE MIR -21 187 2 360 328 75 59 chrX 138805374 138805627 -23794303 - L1ME4a LINE L1 -236 5885 5629 636 167 38 38 chrX 138805641 138805773 -23794157 - FLAM_A SINE Alu -1 132 1 2050 113 28 0 chrX 138805807 138806091 -23793839 + AluSx SINE Alu 1 292 -20 259 233 29 58 chrX 138817247 138817419 -23782511 + (TCTCTG)n Simple_repeat Simple_repeat 2 168 0 268 314 0 17 chrX 138817539 138817711 -23782219 + CT-rich Low_complexity Low_complexity 1 169 0 206 278 0 6 chrX 138818476 138818652 -23781278 + GA-rich Low_complexity Low_complexity 1 175 0 272 270 8 56 chrX 138818674 138818839 -23781091 + GA-rich Low_complexity Low_complexity 1 157 0 201 147 0 0 chrX 138819741 138819775 -23780155 + (TC)n Simple_repeat Simple_repeat 1 34 0 413 343 0 0 chrX 138819775 138819918 -23780012 - MIR SINE MIR -34 228 86 267 258 22 20 chrX 138820327 138820438 -23779492 - L1MC5 LINE L1 -1 8041 7839 491 244 16 8 chrX 138821977 138822104 -23777826 - MER104 DNA Tc2 -52 128 1 370 241 36 0 chrX 138822120 138822203 -23777727 - MIR SINE MIR -146 116 31 353 263 11 142 chrX 138822742 138822932 -23776998 + MIR3 SINE MIR 32 196 -12 4165 243 45 46 chrX 138823013 138823668 -23776262 + L1MEc LINE L1 40 694 -5702 1514 12 0 0 chrX 138823668 138823833 -23776097 + L1PA4 LINE L1 5985 6154 -1 4165 243 45 46 chrX 138823833 138824534 -23775396 + L1MEc LINE L1 694 1394 -5002 1586 234 65 39 chrX 138824591 138825176 -23774754 + L1ME2 LINE L1 5499 6132 -30 518 280 13 0 chrX 138825056 138825213 -23774717 + L1MA10 LINE L1 6176 6334 0 * 189 351 48 55 chrX 138825552 138825717 -23774213 - MIR SINE MIR -93 169 6 432 0 0 0 chrX 138825738 138825786 -23774144 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2233 95 0 3 chrX 138825788 138826072 -23773858 - AluSq SINE Alu -30 283 1 384 287 16 8 chrX 138826125 138826247 -23773683 - MIR SINE MIR -70 192 70 305 93 0 0 chrX 138826963 138827006 -23772924 - L1M4 LINE L1 -454 5720 5678 1556 219 138 3 chrX 138827064 138827448 -23772482 - MER63B DNA MER1_type 0 436 1 1122 212 11 15 chrX 138827481 138827755 -23772175 - L1MB8 LINE L1 -14 6164 5892 1691 154 6 55 chrX 138827774 138828085 -23771845 - AluSx SINE Alu -16 296 1 2582 164 35 4 chrX 138828086 138828542 -23771388 - L1MB8 LINE L1 -378 5796 5327 365 283 99 11 chrX 138828546 138828734 -23771196 - MIR SINE MIR -51 211 8 202 316 0 0 chrX 138828843 138828900 -23771030 + MIR3 SINE MIR 112 168 -40 1723 198 11 33 chrX 138830489 138830853 -23769077 - MLT1A1 LTR MaLR 0 365 10 189 0 0 0 chrX 138831360 138831381 -23768549 + (CA)n Simple_repeat Simple_repeat 1 21 0 885 142 0 8 chrX 138832805 138832939 -23766991 - FLAM_C SINE Alu 0 133 1 2364 202 19 87 chrX 138833544 138833715 -23766215 - L1MC5 LINE L1 -26 7935 7754 2359 200 17 2 chrX 138833715 138834189 -23765741 - L1MB7 LINE L1 -10 6174 5694 2364 202 19 87 chrX 138834189 138834825 -23765105 - L1MC5 LINE L1 -207 7754 7183 2017 134 0 37 chrX 138835127 138835448 -23764482 - AluSx SINE Alu -3 309 1 2291 85 0 0 chrX 138835819 138836141 -23763789 + AluSg SINE Alu 1 322 0 259 209 26 183 chrX 138837103 138837294 -23762636 + MIR SINE MIR 81 241 -21 260 132 0 0 chrX 138839118 138839156 -23760774 - tRNA-Thr-ACA tRNA tRNA -37 39 2 184 228 109 20 chrX 138839700 138839801 -23760129 + MIR SINE MIR 111 220 -42 1387 215 43 46 chrX 138841154 138841545 -23758385 - LTR52 LTR ERVL -23 398 9 2305 172 45 2 chrX 138841551 138841952 -23757978 - LTR52-int LTR ERVL 0 3556 3139 * 3046 227 84 19 chrX 138841923 138842683 -23757247 - LTR52-int LTR ERVL -608 2948 2075 4920 200 68 64 chrX 138842695 138844048 -23755882 - LTR52-int LTR ERVL -2197 1359 1 1116 199 65 109 chrX 138844090 138844493 -23755437 - LTR52 LTR ERVL -36 385 1 1309 139 11 114 chrX 138844929 138845036 -23754894 + MER33 DNA MER1_type 4 120 -2465 2669 140 53 18 chrX 138845036 138845487 -23754443 - MLT1C LTR MaLR 0 467 1 1309 139 11 114 chrX 138845487 138845579 -23754351 + MER33 DNA MER1_type 120 220 -2365 2435 129 49 35 chrX 138845579 138846006 -23753924 + Tigger2a DNA MER2_type 1 433 -1 1309 139 11 114 chrX 138846006 138846064 -23753866 + MER33 DNA MER1_type 220 220 -2365 2150 145 0 0 chrX 138846064 138846368 -23753562 - AluSx SINE Alu -8 304 1 1309 139 11 114 chrX 138846368 138846460 -23753470 + MER33 DNA MER1_type 219 319 -5 837 225 77 5 chrX 138846471 138846680 -23753250 + MER58A DNA MER1_type 1 224 0 257 280 28 28 chrX 138847107 138847214 -23752716 - MIR SINE MIR -6 256 150 210 71 0 0 chrX 138847415 138847443 -23752487 + (CA)n Simple_repeat Simple_repeat 1 28 0 273 321 109 15 chrX 138847831 138847968 -23751962 - MIR SINE MIR -105 157 8 539 204 41 20 chrX 138848949 138849096 -23750834 - L1ME4a LINE L1 -7 6114 5965 746 242 19 57 chrX 138849125 138849271 -23750659 + MIR SINE MIR 6 139 -123 922 217 0 0 chrX 138849271 138849432 -23750498 + FRAM SINE Alu 1 161 -5 746 242 19 57 chrX 138849432 138849549 -23750381 + MIR SINE MIR 139 259 -3 247 141 62 0 chrX 138849570 138849634 -23750296 + (TA)n Simple_repeat Simple_repeat 1 68 0 283 141 0 99 chrX 138849638 138849709 -23750221 - L2 LINE L2 -21 3292 3229 612 266 202 3 chrX 138849714 138850011 -23749919 - L1ME4a LINE L1 -208 5913 5558 591 281 53 46 chrX 138850247 138850308 -23749622 - L2 LINE L2 -561 2753 2694 2742 214 46 3 chrX 138850308 138850872 -23749058 + MLT1G LTR MaLR 1 588 -2 591 281 53 46 chrX 138850872 138850955 -23748975 - L2 LINE L2 -620 2694 2613 2169 124 0 0 chrX 138850955 138851253 -23748677 + AluSx SINE Alu 1 298 -14 591 281 53 46 chrX 138851253 138851523 -23748407 - L2 LINE L2 -701 2613 2335 223 255 0 0 chrX 138851537 138851584 -23748346 - L2 LINE L2 -684 2630 2584 2644 211 24 10 chrX 138851671 138852407 -23747523 + L1ME2 LINE L1 5089 5833 -331 1453 219 28 0 chrX 138852420 138852707 -23747223 - MLT1G LTR MaLR -295 295 1 237 88 0 0 chrX 138852854 138852888 -23747042 + MER3 DNA MER1_type 16 49 -160 362 234 37 37 chrX 138852888 138852995 -23746935 + L1ME2 LINE L1 6055 6161 -3 1896 128 52 27 chrX 138853650 138853978 -23745952 - MER44D DNA MER2_type -3 606 1 389 323 39 0 chrX 138854586 138854716 -23745214 + MIR SINE MIR 19 153 -55 431 311 27 7 chrX 138855611 138855759 -23744171 - MIR SINE MIR -74 188 38 1821 192 0 3 chrX 138857287 138857595 -23742335 - AluJb SINE Alu 0 312 6 1073 224 74 40 chrX 138859430 138859809 -23740121 - MARNA DNA Mariner -175 411 20 44857 40 2 1 chrX 138859895 138866042 -23733888 - L1PA3 LINE L1 0 6155 8 1627 182 17 7 chrX 138866050 138866352 -23733578 - AluJo SINE Alu -7 305 1 336 252 7 59 chrX 138866444 138866579 -23733351 + MIR SINE MIR 124 251 -11 420 20 0 0 chrX 138866583 138866632 -23733298 + (CAT)n Simple_repeat Simple_repeat 2 50 0 1330 181 174 1 chrX 138867686 138868047 -23731883 - L1MB3 LINE L1 -1 6182 5744 187 323 31 0 chrX 138868492 138868557 -23731373 - L2 LINE L2 -8 3305 3239 181 179 0 26 chrX 138868794 138868833 -23731097 + L3b LINE CR1 1224 1261 -322 419 253 11 0 chrX 138869107 138869198 -23730732 - MIR SINE MIR -121 141 50 309 51 0 0 chrX 138869337 138869376 -23730554 + (CAT)n Simple_repeat Simple_repeat 2 40 0 662 240 6 23 chrX 138870366 138870537 -23729393 - MIR SINE MIR -59 203 36 371 288 65 60 chrX 138870848 138871032 -23728898 - MIR3 SINE MIR -7 201 17 762 44 0 0 chrX 138871748 138871838 -23728092 - L1PA5 LINE L1 -2 6152 6063 614 67 0 0 chrX 138871841 138871916 -23728014 + L1PA5 LINE L1 6040 6114 -40 333 68 0 0 chrX 138872374 138872418 -23727512 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1664 161 7 21 chrX 138872420 138872705 -23727225 - AluJo SINE Alu -31 281 1 240 250 47 16 chrX 138873129 138873193 -23726737 + MIR SINE MIR 45 110 -152 471 209 186 0 chrX 138873227 138873380 -23726550 + MER5A DNA MER1_type 4 189 0 429 216 41 10 chrX 138873388 138873485 -23726445 + MER5B DNA MER1_type 1 100 -78 571 230 43 7 chrX 138873515 138873654 -23726276 - MIR SINE MIR -5 257 114 200 214 0 0 chrX 138873718 138873760 -23726170 + MIR3 SINE MIR 151 192 -16 472 329 69 66 chrX 138873893 138874115 -23725815 + L2 LINE L2 2140 2365 -949 2210 116 0 46 chrX 138874115 138874442 -23725488 - AluSx SINE Alu 0 312 1 472 329 69 66 chrX 138874442 138874569 -23725361 + L2 LINE L2 2365 2490 -824 482 290 35 30 chrX 138874585 138874754 -23725176 + L2 LINE L2 2226 2395 -919 1216 251 80 96 chrX 138874757 138875445 -23724485 - L2 LINE L2 -817 2497 1821 396 235 15 103 chrX 138876709 138876913 -23723017 + MARNA DNA Mariner 105 290 -296 266 318 0 11 chrX 138876940 138877028 -23722902 + MARNA DNA Mariner 288 374 -212 489 219 58 32 chrX 138877250 138877405 -23722525 - L1ME4a LINE L1 0 6121 5963 633 329 155 7 chrX 138877414 138877840 -23722090 + L2 LINE L2 2483 2971 -343 222 91 0 0 chrX 138877841 138877874 -23722056 + (TTTTC)n Simple_repeat Simple_repeat 1 33 0 1429 194 24 29 chrX 138878350 138878691 -23721239 + L1ME2 LINE L1 5782 6120 -44 22 94 0 0 chrX 138878939 138879003 -23720927 + AT_rich Low_complexity Low_complexity 1 64 0 523 302 0 8 chrX 138879538 138879667 -23720263 + L2 LINE L2 3145 3272 0 542 311 26 83 chrX 138879705 138879969 -23719961 + L2 LINE L2 2989 3237 -35 630 240 8 0 chrX 138880917 138881042 -23718888 + MER94 DNA DNA 1 126 -8 239 238 0 0 chrX 138881350 138881392 -23718538 - L2 LINE L2 -21 3251 3210 507 260 142 30 chrX 138881477 138881646 -23718284 - MIR SINE MIR -55 207 20 273 228 54 174 chrX 138881672 138881839 -23718091 - L2 LINE L2 -5 3267 3121 340 341 51 28 chrX 138882016 138882192 -23717738 - L2 LINE L2 -213 3059 2880 499 218 8 123 chrX 138882224 138882467 -23717463 + L1MC5 LINE L1 7733 7947 -14 200 347 42 21 chrX 138882541 138882685 -23717245 - L2 LINE L2 -491 2823 2677 983 313 39 31 chrX 138882686 138883175 -23716755 - L2 LINE L2 -438 2876 2384 370 294 182 7 chrX 138883397 138883540 -23716390 - MIR3 SINE MIR -28 180 13 993 103 17 6 chrX 138883679 138883854 -23716076 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 317 145 16 0 chrX 138883854 138883916 -23716014 + CT-rich Low_complexity Low_complexity 1 63 0 862 182 30 24 chrX 138883937 138884102 -23715828 - FRAM SINE Alu 0 166 1 24 53 0 0 chrX 138884135 138884173 -23715757 + AT_rich Low_complexity Low_complexity 1 38 0 789 270 21 25 chrX 138884886 138884987 -23714943 - MIR SINE MIR -1 261 161 1454 176 95 97 chrX 138884987 138885378 -23714552 + MLT1B LTR MaLR 1 390 0 789 270 21 25 chrX 138885378 138885517 -23714413 - MIR SINE MIR -101 161 22 563 252 69 0 chrX 138887234 138887393 -23712537 - MIR SINE MIR 0 262 93 * 764 271 213 78 chrX 138887384 138887909 -23712021 + L2 LINE L2 2060 2655 -659 2167 222 54 43 chrX 138887914 138888333 -23711597 - MLT1E2 LTR MaLR -13 613 201 7433 58 3 6 chrX 138888333 138889410 -23710520 - L1PA7 LINE L1 0 6154 5079 2167 222 54 43 chrX 138889410 138889609 -23710321 - MLT1E2 LTR MaLR -425 201 6 1113 265 85 50 chrX 138889636 138890288 -23709642 + L2 LINE L2 2642 3313 0 283 148 0 74 chrX 138890293 138890347 -23709583 - MIR SINE MIR -161 101 52 579 204 52 14 chrX 138890527 138890754 -23709176 + MLT1B LTR MaLR 172 377 -13 1115 306 15 20 chrX 138890823 138890992 -23708938 + LTR16A LTR ERVL 35 203 -247 2201 215 101 29 chrX 138890992 138891545 -23708385 - MLT1E LTR MaLR 0 593 1 1115 306 15 20 chrX 138891545 138891767 -23708163 + LTR16A LTR ERVL 203 424 -26 677 129 86 17 chrX 138892197 138892313 -23707617 + MLT1C LTR MaLR 1 124 -266 5809 108 7 13 chrX 138892315 138893146 -23706784 + L1PA10 LINE L1 5343 6168 0 1899 155 29 80 chrX 138893149 138893217 -23706713 + MLT1C LTR MaLR 112 182 -285 3113 89 19 7 chrX 138893217 138893632 -23706298 + L1PA8 LINE L1 5746 6165 -7 1899 155 29 80 chrX 138893632 138893938 -23705992 + MLT1C LTR MaLR 182 467 0 206 203 31 78 chrX 138893943 138894007 -23705923 + L2 LINE L2 3137 3197 -75 697 236 51 0 chrX 138894007 138894164 -23705766 - MLT1L LTR MaLR 0 615 451 453 263 58 11 chrX 138894830 138895020 -23704910 - L1ME3A LINE L1 -245 5925 5727 3531 167 17 75 chrX 138895834 138895907 -23704023 + L1MC3 LINE L1 5461 5537 -2248 2680 42 0 0 chrX 138895907 138896213 -23703717 + AluY SINE Alu 1 306 -5 3531 167 17 75 chrX 138896213 138896907 -23703023 + L1MC3 LINE L1 5537 6183 -1602 2853 237 10 9 chrX 138897008 138897687 -23702243 - L1M4 LINE L1 -2181 3965 3286 7711 130 3 5 chrX 138897688 138898827 -23701103 + Tigger1 DNA MER2_type 1 1137 -1281 4962 61 2 0 chrX 138898827 138899413 -23700517 - L1PA7 LINE L1 0 6154 5568 4610 227 69 26 chrX 138899520 138900511 -23699419 - L1ME3A LINE L1 -749 5397 4450 2242 100 33 0 chrX 138900511 138900811 -23699119 - AluSx SINE Alu -2 310 1 4610 227 69 26 chrX 138900811 138900914 -23699016 - L1ME3A LINE L1 -1696 4450 4353 233 87 0 22 chrX 138900914 138900960 -23698970 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 4610 227 69 26 chrX 138900960 138901268 -23698662 - L1ME3A LINE L1 -1793 4353 3934 561 257 91 58 chrX 138901468 138901860 -23698070 + MLT1J1 LTR MaLR 1 438 -8 396 0 0 0 chrX 138901874 138901918 -23698012 + (TG)n Simple_repeat Simple_repeat 2 45 0 937 202 56 56 chrX 138902061 138902274 -23697656 + LTR33 LTR ERVL 1 213 -308 565 320 101 4 chrX 138903519 138903747 -23696183 + MIR SINE MIR 13 262 0 11698 201 58 16 chrX 138904212 138907353 -23692577 + L1MDa LINE L1 18 3292 -3248 389 337 67 0 chrX 138907614 138907807 -23692123 + MIR SINE MIR 4 209 -53 1931 139 17 13 chrX 138907892 138908194 -23691736 + AluSx SINE Alu 5 307 -5 2138 117 3 0 chrX 138908258 138908549 -23691381 + AluSx SINE Alu 1 292 -20 195 42 0 0 chrX 138908549 138908573 -23691357 + (CAT)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chrX 138908787 138908810 -23691120 + AT_rich Low_complexity Low_complexity 1 23 0 925 299 35 31 chrX 138909103 138909528 -23690402 + LTR16B LTR ERVL 38 464 0 354 311 68 68 chrX 138910578 138910768 -23689162 + L2 LINE L2 3044 3233 -39 189 0 0 0 chrX 138910941 138910962 -23688968 + (TAA)n Simple_repeat Simple_repeat 3 23 0 226 284 114 40 chrX 138910972 138911148 -23688782 - MIR SINE MIR -6 256 68 195 245 64 53 chrX 138911085 138911179 -23688751 - L2 LINE L2 -2765 549 455 * 224 276 152 26 chrX 138911253 138911490 -23688440 + L2 LINE L2 1798 2073 -1241 2266 107 3 10 chrX 138911490 138911798 -23688132 - AluSx SINE Alu -6 306 1 224 276 152 26 chrX 138911798 138911824 -23688106 + L2 LINE L2 2073 2094 -1220 309 324 29 0 chrX 138911894 138911996 -23687934 - MIR SINE MIR -67 141 37 856 166 0 14 chrX 138911996 138912141 -23687789 - FLAM_C SINE Alu 0 143 1 262 314 70 65 chrX 138912741 138912967 -23686963 + MIR SINE MIR 7 237 -25 311 261 70 49 chrX 138913258 138913400 -23686530 - MIR SINE MIR 0 262 118 440 306 185 37 chrX 138913828 138914125 -23685805 + L2 LINE L2 2932 3272 0 215 342 17 8 chrX 138914380 138914497 -23685433 - L2 LINE L2 -264 3008 2891 2733 26 0 0 chrX 138914537 138914848 -23685082 + AluYa5 SINE Alu 1 311 0 1880 222 48 35 chrX 138915247 138915769 -23684161 + L1ME1 LINE L1 5629 6157 -9 5272 138 44 7 chrX 138915840 138915931 -23683999 - L1MC1 LINE L1 -1 6332 6246 279 0 0 0 chrX 138915931 138915962 -23683968 + (CA)n Simple_repeat Simple_repeat 2 32 0 5272 138 44 7 chrX 138915962 138916711 -23683219 - L1MC1 LINE L1 -87 6246 5461 3334 34 5 3 chrX 138916711 138917087 -23682843 - L1PA5 LINE L1 -4 6150 5770 1854 80 19 10 chrX 138917087 138917394 -23682536 - L1PA4 LINE L1 0 6155 5677 1229 214 11 39 chrX 138917394 138917580 -23682350 - L1MC1 LINE L1 -744 5402 5212 2820 13 0 0 chrX 138917580 138917886 -23682044 - AluY SINE Alu -5 306 1 1229 214 11 39 chrX 138917886 138918185 -23681745 - L1MC1 LINE L1 -934 5212 4985 374 232 20 30 chrX 138918287 138918386 -23681544 + MLT1F1 LTR MaLR 50 147 -420 * 3200 156 20 7 chrX 138918363 138918952 -23680978 + L1MC3 LINE L1 7189 7785 0 626 312 83 25 chrX 138919046 138919140 -23680790 - L1MC4a LINE L1 -1891 5917 5830 270 0 0 0 chrX 138919140 138919170 -23680760 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 282 29 0 0 chrX 138919169 138919204 -23680726 + (CA)n Simple_repeat Simple_repeat 1 35 0 626 312 83 25 chrX 138919170 138919712 -23680218 - L1MC4a LINE L1 -1978 5830 5280 249 262 24 0 chrX 138920034 138920118 -23679812 - MLT1J LTR MaLR -15 496 411 650 315 9 0 chrX 138920220 138920436 -23679494 - MLT1J LTR MaLR -242 269 52 728 200 29 0 chrX 138920662 138920832 -23679098 - L1MC5 LINE L1 -58 7903 7729 376 206 266 14 chrX 138920983 138921189 -23678741 + L2 LINE L2 2977 3312 -1 247 269 54 54 chrX 138921349 138921442 -23678488 - L2 LINE L2 0 3272 3180 1309 288 90 13 chrX 138921939 138922417 -23677513 + MLT1G1 LTR MaLR 15 570 -25 406 221 41 28 chrX 138922536 138922681 -23677249 - L1ME4a LINE L1 -1 6120 5974 411 171 0 0 chrX 138922689 138922765 -23677165 + CT-rich Low_complexity Low_complexity 3 78 0 2047 140 7 3 chrX 138922765 138923073 -23676857 - AluSx SINE Alu -3 309 1 324 286 67 21 chrX 138923215 138923453 -23676477 - L1ME4a LINE L1 -303 5818 5570 191 371 0 0 chrX 138924299 138924361 -23675569 + L3 LINE CR1 1509 1570 -7 180 111 0 0 chrX 138925112 138925139 -23674791 + (TG)n Simple_repeat Simple_repeat 1 27 0 235 333 45 30 chrX 138925276 138925408 -23674522 - L2 LINE L2 -2 3311 3178 270 212 39 134 chrX 138925963 138926194 -23673736 - L1MC4 LINE L1 -2 8040 7832 724 218 15 34 chrX 138926220 138926426 -23673504 - L1ME2 LINE L1 0 6164 5963 467 205 6 64 chrX 138926503 138926659 -23673271 - L1MC4 LINE L1 -1 8041 7895 684 202 0 8 chrX 138926661 138926780 -23673150 + FLAM_A SINE Alu 2 119 -14 30 0 0 0 chrX 138926780 138926810 -23673120 + AT_rich Low_complexity Low_complexity 1 30 0 244 151 75 0 chrX 138926839 138926892 -23673038 - L1ME2 LINE L1 -205 5959 5903 8735 32 0 1 chrX 138926994 138928809 -23671121 - L1PA3 LINE L1 -3 6152 4329 239 271 25 8 chrX 138928866 138928988 -23670942 - HAL1 LINE L1 -126 2381 2258 1851 215 48 22 chrX 138929037 138929902 -23670028 - L1ME2 LINE L1 -486 5680 4789 231 114 0 0 chrX 138930159 138930194 -23669736 + (CA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chrX 138930197 138930224 -23669706 + (TG)n Simple_repeat Simple_repeat 2 28 0 1278 131 0 0 chrX 138930240 138930438 -23669492 + MER46A DNA MER2_type 38 235 -1 372 22 0 0 chrX 138930440 138930485 -23669445 + (CA)n Simple_repeat Simple_repeat 2 46 0 1173 217 9 46 chrX 138930491 138930814 -23669116 - L1M4 LINE L1 -6230 312 2 30 27 0 0 chrX 138930878 138930915 -23669015 + AT_rich Low_complexity Low_complexity 1 37 0 421 202 231 74 chrX 138930989 138931192 -23668738 - L2 LINE L2 0 3313 3079 * 992 282 129 21 chrX 138931168 138931554 -23668376 - L2 LINE L2 -343 2971 2544 345 290 24 8 chrX 138931554 138931678 -23668252 - HAL1 LINE L1 -1644 863 738 377 254 36 22 chrX 138932246 138932384 -23667546 - HAL1 LINE L1 -2366 141 2 374 306 18 9 chrX 138932489 138932600 -23667330 + MIR SINE MIR 30 141 -121 392 182 8 25 chrX 138932618 138932739 -23667191 + (TATATG)n Simple_repeat Simple_repeat 4 122 0 1166 175 49 0 chrX 138932778 138933024 -23666906 + L1MA9 LINE L1 6055 6312 0 225 294 98 0 chrX 138933024 138933126 -23666804 + MIR SINE MIR 139 250 -12 368 127 0 0 chrX 138933131 138933186 -23666744 - L1MA2 LINE L1 -417 5883 5829 2532 111 41 2 chrX 138933186 138933591 -23666339 + L1MA2 LINE L1 5874 6304 0 357 211 56 0 chrX 138933833 138933904 -23666026 - L2 LINE L2 0 3313 3239 419 270 0 30 chrX 138934067 138934167 -23665763 + L2 LINE L2 3174 3270 -2 534 335 32 0 chrX 138934338 138934496 -23665434 - L2 LINE L2 -9 3263 3101 8706 152 117 59 chrX 138935056 138936882 -23663048 + L1MCa LINE L1 51 1770 -4656 324 0 0 0 chrX 138936882 138936918 -23663012 + (TG)n Simple_repeat Simple_repeat 1 36 0 8706 152 117 59 chrX 138936918 138937369 -23662561 + L1MCa LINE L1 1770 2194 -4232 1627 212 3 3 chrX 138937369 138937666 -23662264 + AluJo SINE Alu 1 297 -15 8706 152 117 59 chrX 138937666 138937677 -23662253 + L1MCa LINE L1 2194 2203 -4223 1431 183 0 0 chrX 138937677 138937939 -23661991 + L1PB4 LINE L1 5892 6153 -3 8706 152 117 59 chrX 138937939 138938008 -23661922 + L1MCa LINE L1 2203 2540 -3886 41289 46 5 1 chrX 138938009 138944141 -23655789 + L1PA4 LINE L1 1 6155 0 975 267 48 0 chrX 138944140 138944477 -23655453 + L1MCa LINE L1 2528 2880 -3546 * 2959 104 26 58 chrX 138944503 138945032 -23654898 - Tigger1 DNA MER2_type -505 1913 1402 1239 160 89 38 chrX 138945032 138945325 -23654605 - THE1C LTR MaLR 0 375 68 231 177 114 0 chrX 138945339 138945418 -23654512 - L1M4 LINE L1 -3818 2328 2241 231 177 114 0 chrX 138945437 138945516 -23654414 - L1M4 LINE L1 -3818 2328 2241 29321 103 10 17 chrX 138945551 138951203 -23648727 + L1PA7 LINE L1 1148 7590 -2 6707 125 4 5 chrX 138951203 138952258 -23647672 - Tigger1 DNA MER2_type -1279 1139 86 419 296 113 55 chrX 139002260 139002676 -23597254 - L2 LINE L2 -751 2563 2124 513 316 111 4 chrX 139002690 139002915 -23597015 - MIR SINE MIR -12 250 2 236 237 216 94 chrX 139002924 139003295 -23596635 - L2 LINE L2 -1292 2022 1607 1350 273 105 7 chrX 139003507 139003965 -23595965 + LTR33 LTR ERVL 17 519 -2 192 111 0 0 chrX 139004017 139004053 -23595877 + (T)n Simple_repeat Simple_repeat 1 36 0 333 299 81 46 chrX 139004053 139004250 -23595680 - L2 LINE L2 -911 2403 2200 193 279 96 10 chrX 139004459 139004563 -23595367 - L2 LINE L2 -1954 1360 1248 801 226 11 44 chrX 139004870 139004951 -23594979 - MER96 DNA MER1_type 0 175 93 1887 164 14 0 chrX 139004951 139005243 -23594687 + AluJo SINE Alu 1 296 -16 801 226 11 44 chrX 139005243 139005342 -23594588 - MER96 DNA MER1_type -82 93 1 295 193 200 22 chrX 139005358 139005493 -23594437 - L1ME4a LINE L1 -104 6017 5859 219 219 0 0 chrX 139006335 139006376 -23593554 + (CCA)n Simple_repeat Simple_repeat 2 42 0 201 324 15 0 chrX 139007034 139007102 -23592828 - MIR SINE MIR -19 243 175 2789 219 62 10 chrX 139007176 139008292 -23591638 + L1M4 LINE L1 3951 5261 -885 904 207 47 93 chrX 139008290 139008456 -23591474 - L1M4 LINE L1 -2263 3883 3711 * 267 31 0 0 chrX 139008456 139008488 -23591442 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1539 187 0 57 chrX 139008492 139008791 -23591139 - AluJb SINE Alu -30 282 1 904 207 47 93 chrX 139008791 139008919 -23591011 - L1M4 LINE L1 -2438 3708 3598 22 0 0 0 chrX 139008924 139008946 -23590984 + AT_rich Low_complexity Low_complexity 1 22 0 6039 113 0 8 chrX 139008946 139009931 -23589999 - L1PB1 LINE L1 -8 6143 5141 2317 154 3 0 chrX 139009955 139010337 -23589593 + L1 LINE L1 3895 4277 -1869 1045 287 0 8 chrX 139010484 139010728 -23589202 - MIR SINE MIR -1 261 20 2213 92 0 7 chrX 139010840 139011223 -23588707 + AluY SINE Alu 1 381 0 273 291 23 0 chrX 139011351 139011437 -23588493 - MIR SINE MIR 0 262 175 512 286 132 9 chrX 139011648 139011861 -23588069 - MIR SINE MIR -4 258 20 1584 134 110 41 chrX 139012083 139012374 -23587556 - AluSx SINE Alu -1 311 1 336 323 8 24 chrX 139012835 139012959 -23586971 + MIR SINE MIR 14 135 -127 30 45 0 0 chrX 139013277 139013321 -23586609 + AT_rich Low_complexity Low_complexity 1 44 0 406 62 118 6 chrX 139013321 139013482 -23586448 + (TA)n Simple_repeat Simple_repeat 2 180 0 463 20 133 0 chrX 139013507 139013657 -23586273 + (TA)n Simple_repeat Simple_repeat 1 170 0 297 127 36 0 chrX 139013658 139013713 -23586217 + MLT2B1 LTR ERVL 464 520 0 218 155 35 86 chrX 139014223 139014281 -23585649 - MIR SINE MIR -80 128 74 443 274 185 0 chrX 139014344 139014490 -23585440 + MIR SINE MIR 13 185 -77 1109 260 120 30 chrX 139014964 139015364 -23584566 + L2 LINE L2 2877 3312 -1 389 250 169 20 chrX 139015366 139015514 -23584416 - MIR SINE MIR -90 172 3 192 341 39 44 chrX 139015937 139016119 -23583811 + L2 LINE L2 603 783 -2531 677 342 21 0 chrX 139017149 139017392 -23582538 + L2 LINE L2 2636 2883 -431 749 310 71 0 chrX 139017397 139017652 -23582278 + L2 LINE L2 2589 2861 -453 355 318 26 13 chrX 139018699 139018853 -23581077 + MIR3 SINE MIR 53 208 0 851 131 0 0 chrX 139018988 139019110 -23580820 + AluSp/q SINE Alu 173 294 -19 1715 164 55 49 chrX 139019317 139019690 -23580240 + L1MA8 LINE L1 4715 5092 -1054 3016 147 12 14 chrX 139019690 139020193 -23579737 + L1MA8 LINE L1 5787 6288 -3 1715 164 55 49 chrX 139020193 139020204 -23579726 + L1MA8 LINE L1 5092 5101 -1045 1209 243 114 91 chrX 139021121 139021632 -23578298 + MLT1E LTR MaLR 1 528 -65 1692 154 60 0 chrX 139021632 139021899 -23578031 - AluSx SINE Alu -27 285 3 1209 243 114 91 chrX 139021899 139021967 -23577963 + MLT1E LTR MaLR 528 593 0 402 323 0 8 chrX 139022085 139022209 -23577721 + MIR SINE MIR 12 134 -128 204 40 0 0 chrX 139022348 139022373 -23577557 + (T)n Simple_repeat Simple_repeat 1 25 0 283 314 68 2 chrX 139022744 139022841 -23577089 - MIR SINE MIR -101 107 2 363 302 32 81 chrX 139023262 139023570 -23576360 + L2 LINE L2 2976 3268 -4 287 182 52 52 chrX 139023822 139023899 -23576031 - LTR33A LTR ERVL 0 523 447 1697 187 0 23 chrX 139024032 139024332 -23575598 - AluJo SINE Alu -19 293 1 350 200 140 53 chrX 139025462 139025612 -23574318 + MLT1J2 LTR MaLR 1 163 -287 463 258 50 17 chrX 139025888 139026008 -23573922 + L2 LINE L2 3149 3272 0 2099 141 3 3 chrX 139026166 139026471 -23573459 + AluSx SINE Alu 1 305 -7 355 237 63 50 chrX 139026498 139026675 -23573255 + MIR SINE MIR 38 212 -50 201 147 0 0 chrX 139026695 139026729 -23573201 + (CA)n Simple_repeat Simple_repeat 1 34 0 238 296 41 51 chrX 139027327 139027425 -23572505 - L2 LINE L2 -7 3265 3169 2015 232 88 53 chrX 139027478 139028081 -23571849 - MLT1E2 LTR MaLR 0 626 1 245 349 9 0 chrX 139028470 139028579 -23571351 + L2 LINE L2 1763 1872 -1442 2301 155 7 16 chrX 139028634 139029018 -23570912 + MLT2B2 LTR ERVL 1 365 -49 273 119 0 0 chrX 139029046 139029088 -23570842 + (CA)n Simple_repeat Simple_repeat 1 42 0 242 208 0 0 chrX 139029089 139029137 -23570793 + MLT2B2 LTR ERVL 367 414 0 250 280 97 0 chrX 139029157 139029250 -23570680 + MIR SINE MIR 109 210 -52 245 296 0 14 chrX 139029424 139029495 -23570435 + L2 LINE L2 3190 3259 -13 201 345 36 12 chrX 139029686 139029770 -23570160 - L3b LINE CR1 -92 1491 1406 450 75 0 0 chrX 139029903 139029970 -23569960 + (TC)n Simple_repeat Simple_repeat 1 67 0 536 256 57 40 chrX 139030119 139030295 -23569635 + MIR SINE MIR 81 259 -3 588 213 0 0 chrX 139030829 139030937 -23568993 - MER5A DNA MER1_type -81 108 1 384 250 117 0 chrX 139031255 139031375 -23568555 - MER117 DNA MER1_type -60 137 4 327 277 151 17 chrX 139031597 139031716 -23568214 - L2 LINE L2 -1 3271 3137 405 256 38 109 chrX 139034363 139034568 -23565362 + L2 LINE L2 3076 3266 -1 312 27 0 0 chrX 139034568 139034605 -23565325 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 195 311 68 19 chrX 139035609 139035712 -23564218 - L2 LINE L2 -577 2737 2630 475 255 64 36 chrX 139036782 139036995 -23562935 + MIR SINE MIR 1 212 -50 444 342 164 24 chrX 139037719 139038591 -23561339 + L2 LINE L2 1711 2704 -610 2104 115 0 0 chrX 139038632 139038918 -23561012 - AluSx SINE Alu 0 312 27 314 240 151 47 chrX 139038923 139039075 -23560855 - MIR SINE MIR -63 145 1 3272 170 11 0 chrX 139040077 139040693 -23559237 + L1MB8 LINE L1 5223 5843 -331 5222 115 12 47 chrX 139040701 139041539 -23558391 - L1PA15 LINE L1 -13 6152 5344 1642 157 70 21 chrX 139041539 139041861 -23558069 + L1MB8 LINE L1 5831 6177 -1 192 348 51 34 chrX 139041863 139041981 -23557949 - L2 LINE L2 -15 3257 3138 748 254 110 64 chrX 139042085 139042475 -23557455 + MLT1L LTR MaLR 208 615 0 23 0 0 0 chrX 139042501 139042524 -23557406 + AT_rich Low_complexity Low_complexity 1 23 0 619 339 98 43 chrX 139042524 139043170 -23556760 - L2 LINE L2 -569 2745 2065 274 276 92 0 chrX 139043184 139043260 -23556670 - L2 LINE L2 -15 3298 3216 234 282 121 16 chrX 139043232 139043356 -23556574 - L2 LINE L2 -1246 2068 1932 * 273 324 126 0 chrX 139043781 139043892 -23556038 + L2 LINE L2 3134 3258 -14 23 68 0 0 chrX 139043942 139043986 -23555944 + AT_rich Low_complexity Low_complexity 1 44 0 1608 313 7 55 chrX 139044350 139045060 -23554870 + L2 LINE L2 2098 2773 -541 1552 189 3 61 chrX 139045428 139045771 -23554159 - MLT2C1 LTR ERVL -74 323 1 22 0 0 0 chrX 139046315 139046337 -23553593 + AT_rich Low_complexity Low_complexity 1 22 0 319 212 0 71 chrX 139047395 139047480 -23552450 + MIR SINE MIR 103 181 -81 298 293 167 29 chrX 139048203 139048377 -23551553 + MIR SINE MIR 6 203 -59 1986 197 44 48 chrX 139048377 139048855 -23551075 - MLT1D LTR MaLR -4 501 26 1405 186 8 12 chrX 139048963 139049221 -23550709 - L1MD3 LINE L1 -8 7987 7731 9698 235 54 42 chrX 139049383 139052357 -23547573 - L2 LINE L2 -17 3296 301 255 61 0 0 chrX 139053591 139053624 -23546306 + (TG)n Simple_repeat Simple_repeat 2 34 0 1374 231 36 7 chrX 139053863 139054170 -23545760 + MER58B DNA MER1_type 2 317 -24 377 309 33 11 chrX 139054549 139054730 -23545200 + L1MEd LINE L1 914 1098 -5021 946 285 22 88 chrX 139054735 139055145 -23544785 - MLT1J LTR MaLR -128 383 1 724 187 155 7 chrX 139055296 139055451 -23544479 + MER63A DNA MER1_type 2 179 -31 493 271 99 32 chrX 139055661 139055966 -23543964 + L1MEd LINE L1 2882 3223 -2906 1952 142 0 14 chrX 139055966 139056277 -23543653 + AluJb SINE Alu 1 307 0 493 271 99 32 chrX 139056277 139056373 -23543557 + L1MEd LINE L1 3223 3311 -2818 3947 232 123 56 chrX 139056396 139058098 -23541832 + L1MC4 LINE L1 6103 7950 -92 430 259 36 0 chrX 139058388 139058500 -23541430 + MIR SINE MIR 28 143 -65 464 274 211 10 chrX 139058875 139059083 -23540847 + L2 LINE L2 3014 3263 -9 603 256 7 15 chrX 139059417 139059554 -23540376 - L2 LINE L2 0 3272 3137 493 263 17 0 chrX 139059905 139060023 -23539907 - MIR SINE MIR 0 262 143 912 242 33 5 chrX 139060034 139060249 -23539681 + MIR SINE MIR 12 232 -30 226 292 44 71 chrX 139060292 139060405 -23539525 - MIR SINE MIR -151 111 2 189 306 133 51 chrX 139060675 139060773 -23539157 + MIR SINE MIR 2 107 -101 267 193 34 0 chrX 139060925 139061013 -23538917 + (TA)n Simple_repeat Simple_repeat 1 91 0 181 302 0 63 chrX 139062163 139062226 -23537704 - L2 LINE L2 -14 3258 3200 944 269 62 46 chrX 139062682 139062749 -23537181 - MLT1J2 LTR MaLR -121 329 265 2161 127 3 0 chrX 139062749 139063049 -23536881 + AluSq SINE Alu 1 301 -12 944 269 62 46 chrX 139063049 139063305 -23536625 - MLT1J2 LTR MaLR -185 265 1 670 314 151 15 chrX 139063317 139063709 -23536221 + L2 LINE L2 2865 3309 -4 1712 111 0 153 chrX 139063828 139064169 -23535761 - AluSx SINE Alu -23 289 1 984 257 27 27 chrX 139064170 139064427 -23535503 - MIR SINE MIR -3 259 3 1615 274 25 49 chrX 139065005 139065600 -23534330 + L2 LINE L2 2075 2655 -659 4132 175 116 91 chrX 139065693 139066247 -23533683 + L1MC3 LINE L1 6546 7085 -700 327 260 0 83 chrX 139066247 139066343 -23533587 + MLT1F1 LTR MaLR 37 124 -443 4132 175 116 91 chrX 139066343 139066902 -23533028 + L1MC3 LINE L1 7085 7784 -1 437 299 164 10 chrX 139066904 139067294 -23532636 + L2 LINE L2 2707 3264 -49 1827 175 51 40 chrX 139068183 139068554 -23531376 - THE1C LTR MaLR 0 375 1 7130 120 15 6 chrX 139068554 139069599 -23530331 - THE1C-int LTR MaLR 0 1580 526 1595 108 9 4 chrX 139069598 139069829 -23530101 - THE1C-int LTR MaLR -1345 235 4 * 1956 139 43 40 chrX 139069832 139070206 -23529724 - THE1C LTR MaLR 0 375 1 1239 168 26 9 chrX 139070435 139070667 -23529263 - L1PA16 LINE L1 -16 6150 5915 311 230 10 157 chrX 139070813 139070877 -23529053 - MER5B DNA MER1_type -2 176 104 1952 149 0 32 chrX 139070877 139071185 -23528745 + AluJb SINE Alu 1 298 -14 311 230 10 157 chrX 139071185 139071324 -23528606 - MER5B DNA MER1_type -74 104 3 3576 74 6 0 chrX 139071670 139072143 -23527787 - L1PA7 LINE L1 -1 6153 5678 204 97 0 0 chrX 139072179 139072210 -23527720 + (TG)n Simple_repeat Simple_repeat 2 32 0 1531 131 82 0 chrX 139072673 139072734 -23527196 - L1MA7 LINE L1 -427 5864 5809 458 33 17 0 chrX 139072734 139072794 -23527136 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 1531 131 82 0 chrX 139072794 139073000 -23526930 - L1MA7 LINE L1 -482 5809 5575 1508 112 8 25 chrX 139072995 139073237 -23526693 + L1MA7 LINE L1 5866 6103 -188 * 1243 186 113 67 chrX 139073239 139073333 -23526597 + MER2 DNA MER2_type 2 90 -255 6758 28 0 0 chrX 139073333 139074121 -23525809 + L1PA5 LINE L1 5367 6154 0 1243 186 113 67 chrX 139074121 139074353 -23525577 + MER2 DNA MER2_type 90 343 -2 897 124 21 36 chrX 139074353 139074547 -23525383 + L1MA7 LINE L1 6101 6291 0 239 309 85 11 chrX 139075009 139075103 -23524827 + L2 LINE L2 3208 3308 -5 294 300 50 39 chrX 139075523 139075703 -23524227 - MIR SINE MIR -46 216 35 399 295 43 22 chrX 139076450 139076589 -23523341 - MIR3 SINE MIR -48 160 19 352 229 0 0 chrX 139076654 139076724 -23523206 - MIR SINE MIR -3 259 190 321 68 0 0 chrX 139076788 139076832 -23523098 + (TC)n Simple_repeat Simple_repeat 1 44 0 376 309 49 8 chrX 139077698 139077821 -23522109 - L2 LINE L2 -1 3271 3144 3922 89 9 2 chrX 139077821 139078371 -23521559 + MER41A LTR ERV1 1 554 0 546 141 10 20 chrX 139078375 139078474 -23521456 + MER4A LTR ERV1 1 98 -566 1663 125 3 78 chrX 139078474 139078847 -23521083 + MER4A LTR ERV1 261 664 0 912 135 3 0 chrX 139079004 139079156 -23520774 + MER57B LTR ERV1 245 430 -4 4219 138 38 1 chrX 139079163 139079814 -23520116 + MER4A-int LTR ERV1 1 675 -6862 3485 135 56 4 chrX 139079808 139080534 -23519396 + MER4A-int LTR ERV1 288 1136 -4810 * 2207 145 53 4 chrX 139080524 139081041 -23518889 + MER4A-int LTR ERV1 1371 2017 -3929 * 5696 152 68 23 chrX 139081037 139082691 -23517239 + MER4A-int LTR ERV1 2167 3295 -1720 12275 103 107 54 chrX 139082694 139084533 -23515397 + MER57B-int LTR ERV1 5307 7274 -263 195 42 0 0 chrX 139084533 139084557 -23515373 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 12275 103 107 54 chrX 139084557 139084836 -23515094 + MER57B-int LTR ERV1 7274 7537 0 2971 120 5 0 chrX 139084836 139085268 -23514662 + MER57B LTR ERV1 1 434 0 354 318 0 9 chrX 139085292 139085399 -23514531 + MIR SINE MIR 40 145 -63 1837 146 61 15 chrX 139085433 139085761 -23514169 + MER61A LTR ERV1 1 343 0 1398 204 61 25 chrX 139085855 139086247 -23513683 - MER113 DNA MER1_type? -115 406 1 923 219 61 28 chrX 139086258 139086654 -23513276 + MLT1J2 LTR MaLR 1 450 0 276 328 0 0 chrX 139086668 139086735 -23513195 + L2 LINE L2 3206 3272 0 291 89 0 0 chrX 139087440 139087485 -23512445 + AluSc SINE Alu 255 299 0 2375 71 10 0 chrX 139087609 139087917 -23512013 + AluY SINE Alu 1 311 0 393 321 8 0 chrX 139087962 139088093 -23511837 + MIR SINE MIR 117 248 -14 1203 222 0 16 chrX 139088125 139088368 -23511562 + MIR SINE MIR 24 262 0 385 375 5 5 chrX 139088441 139088633 -23511297 + L2 LINE L2 605 796 -2518 950 202 48 83 chrX 139088671 139088983 -23510947 + MER39 LTR ERV1 407 707 0 1498 175 26 83 chrX 139088983 139089331 -23510599 + MLT1A2 LTR MaLR 3 330 -44 596 289 178 34 chrX 139089353 139089977 -23509953 + L2 LINE L2 1492 2205 -1109 245 190 0 0 chrX 139090023 139090081 -23509849 + L1MC4 LINE L1 6644 6701 -1341 229 245 250 27 chrX 139090085 139090269 -23509661 + L2 LINE L2 2303 2527 -787 386 303 148 0 chrX 139090310 139090472 -23509458 + MIR SINE MIR 75 260 -2 2207 162 6 6 chrX 139090487 139090852 -23509078 + MLT1A1 LTR MaLR 1 365 0 666 358 4 12 chrX 139090860 139091100 -23508830 + L2 LINE L2 2543 2780 -534 623 304 69 83 chrX 139091140 139091502 -23508428 + L2 LINE L2 2915 3271 -1 231 36 0 0 chrX 139092507 139092535 -23507395 + (TG)n Simple_repeat Simple_repeat 1 28 0 2198 117 3 0 chrX 139092665 139092965 -23506965 - AluSx SINE Alu -11 301 1 225 0 0 0 chrX 139093020 139093045 -23506885 + (TG)n Simple_repeat Simple_repeat 2 26 0 1767 182 3 19 chrX 139093647 139093960 -23505970 - AluJb SINE Alu -4 308 1 275 212 0 94 chrX 139094093 139094178 -23505752 - MER69 DNA AcHobo 0 2526 2450 * 720 94 189 31 chrX 139094175 139094302 -23505628 - MER69 DNA AcHobo -2379 147 1 285 296 75 48 chrX 139095296 139095482 -23504448 + MIR SINE MIR 62 252 -10 1391 142 24 5 chrX 139095557 139095769 -23504161 - AluJo SINE Alu -90 222 7 244 258 45 15 chrX 139095802 139095868 -23504062 + L2 LINE L2 2542 2609 -705 591 266 77 43 chrX 139096045 139096459 -23503471 - L1MC5 LINE L1 -223 7738 7311 2157 160 15 42 chrX 139096544 139096945 -23502985 + MLT1B LTR MaLR 1 390 0 549 315 106 37 chrX 139097120 139097221 -23502709 + L2 LINE L2 2558 2651 -621 582 325 26 0 chrX 139097221 139097412 -23502518 - MER91A DNA MER1_type 0 196 1 549 315 106 37 chrX 139097412 139097981 -23501949 + L2 LINE L2 2651 3272 0 183 297 198 0 chrX 139098007 139098098 -23501832 + MIR SINE MIR 133 241 -21 655 226 151 13 chrX 139104430 139104589 -23495341 - MER5A DNA MER1_type -1 188 8 22 0 0 0 chrX 139104789 139104811 -23495119 + AT_rich Low_complexity Low_complexity 1 22 0 206 344 11 0 chrX 139105290 139105380 -23494550 - L3b LINE CR1 -179 1404 1314 447 232 97 7 chrX 139105468 139105623 -23494307 + L1MC4a LINE L1 5789 5957 -1851 371 246 139 32 chrX 139105842 139106029 -23493901 + L1MC4a LINE L1 6121 6327 -1481 6073 137 14 6 chrX 139106044 139107281 -23492649 - HSMAR2 DNA Mariner 0 1302 1 2818 270 62 33 chrX 139107362 139108650 -23491280 + L1MC4 LINE L1 6427 7710 -98 2116 92 4 0 chrX 139108656 139108929 -23491001 - AluSq SINE Alu -39 274 1 330 165 24 12 chrX 139108982 139109067 -23490863 + (TA)n Simple_repeat Simple_repeat 2 87 0 336 275 29 7 chrX 139109067 139109205 -23490725 + L1MC4 LINE L1 7902 8042 0 1518 100 45 0 chrX 139109956 139110176 -23489754 + MER30 DNA MER1_type 1 230 0 219 258 117 148 chrX 139110493 139110749 -23489181 - L2 LINE L2 -6 3266 3019 183 389 29 29 chrX 139111468 139111607 -23488323 + L2 LINE L2 2715 2853 -461 * 458 230 118 15 chrX 139111592 139111727 -23488203 - MIR SINE MIR -1 261 113 1947 260 16 38 chrX 139111728 139111797 -23488133 + L2 LINE L2 2240 2309 -1005 2125 120 0 0 chrX 139111797 139112129 -23487801 - AluSx SINE Alu 0 332 1 1947 260 16 38 chrX 139112129 139112615 -23487315 + L2 LINE L2 2309 2784 -530 5404 224 44 20 chrX 139112625 139113606 -23486324 + L1ME1 LINE L1 3769 4725 -1441 3152 81 23 0 chrX 139113606 139114048 -23485882 + L1PA12 LINE L1 5717 6168 0 5404 224 44 20 chrX 139114048 139115401 -23484529 + L1ME1 LINE L1 4725 6157 -9 569 291 33 29 chrX 139115415 139115806 -23484124 + L1MEd LINE L1 1515 2093 -912 457 243 0 0 chrX 139115827 139115930 -23484000 + L1ME3 LINE L1 6059 6161 -1 26 30 0 0 chrX 139116015 139116048 -23483882 + AT_rich Low_complexity Low_complexity 1 33 0 538 204 86 25 chrX 139116246 139116408 -23483522 + MER104 DNA Tc2 5 176 -4 2132 115 25 25 chrX 139116689 139117054 -23482876 - L1MA2 LINE L1 0 6304 5940 1075 274 68 20 chrX 139117348 139117699 -23482231 + L1MC4 LINE L1 6695 7062 -980 937 194 43 0 chrX 139117718 139117904 -23482026 + L1MB5 LINE L1 5973 6166 -8 269 167 17 33 chrX 139117912 139117972 -23481958 + L1MC5 LINE L1 7849 7907 -54 1012 295 97 12 chrX 139117975 139118667 -23481263 + L1MEd LINE L1 3384 4134 -2510 1434 89 42 3 chrX 139118711 139119547 -23480383 + L1PA11 LINE L1 5311 6202 0 295 29 0 0 chrX 139119547 139119582 -23480348 + (TAAA)n Simple_repeat Simple_repeat 2 164 0 692 286 55 41 chrX 139119649 139120016 -23479914 + L1MEd LINE L1 4244 4615 -2029 511 286 160 16 chrX 139120936 139121254 -23478676 - MLT1L LTR MaLR -75 540 177 775 233 17 17 chrX 139121273 139121449 -23478481 - MER5A DNA MER1_type 0 189 14 2046 159 0 0 chrX 139121833 139122141 -23477789 + AluJb SINE Alu 1 308 -4 311 303 168 0 chrX 139122180 139122299 -23477631 + MIR SINE MIR 124 262 0 24 32 0 0 chrX 139122632 139122663 -23477267 + AT_rich Low_complexity Low_complexity 1 31 0 932 205 93 23 chrX 139122877 139123287 -23476643 - LTR48B LTR ERV1 0 644 163 21 0 0 0 chrX 139123299 139123320 -23476610 + AT_rich Low_complexity Low_complexity 1 21 0 258 260 21 21 chrX 139123320 139123416 -23476514 - MER34 LTR ERV1 -446 96 1 279 277 39 46 chrX 139123465 139123595 -23476335 - LTR67 LTR ERVL 0 557 429 1100 220 32 5 chrX 139123664 139123882 -23476048 + MER58A DNA MER1_type 1 224 0 270 0 0 0 chrX 139124138 139124168 -23475762 + (A)n Simple_repeat Simple_repeat 1 30 0 380 301 140 17 chrX 139124454 139124647 -23475283 + MIR SINE MIR 8 220 -42 1750 231 78 44 chrX 139125348 139125872 -23474058 - MLT1F LTR MaLR 0 542 1 554 259 25 38 chrX 139126446 139126604 -23473326 - MIR SINE MIR -73 189 34 1149 241 92 5 chrX 139126613 139126994 -23472936 - L1ME3A LINE L1 0 6170 5757 1603 171 29 26 chrX 139127056 139127396 -23472534 + MLT2C1 LTR ERVL 1 341 -56 1088 168 0 34 chrX 139127397 139127606 -23472324 + MER2 DNA MER2_type 1 202 -143 304 143 29 29 chrX 139127905 139128045 -23471885 + (TA)n Simple_repeat Simple_repeat 2 141 0 36 70 0 0 chrX 139128060 139128131 -23471799 + AT_rich Low_complexity Low_complexity 1 71 0 296 200 21 28 chrX 139128143 139128288 -23471642 + (TA)n Simple_repeat Simple_repeat 2 145 0 405 0 0 0 chrX 139128288 139128333 -23471597 + (CA)n Simple_repeat Simple_repeat 2 46 0 2842 234 40 54 chrX 139128336 139128651 -23471279 + L1MC3 LINE L1 5838 5187 -1113 4990 155 9 8 chrX 139128651 139129522 -23470408 + L1MC1 LINE L1 5462 6333 0 2842 234 40 54 chrX 139129522 139130227 -23469703 + L1MC3 LINE L1 5186 5899 -401 194 189 0 19 chrX 139130252 139130305 -23469625 + GA-rich Low_complexity Low_complexity 3 54 0 522 262 5 11 chrX 139130527 139130714 -23469216 + L1MC4 LINE L1 7714 7899 -143 823 336 148 17 chrX 139131407 139131526 -23468404 - L2 LINE L2 -1217 2097 1995 1014 187 50 0 chrX 139131526 139131724 -23468206 - MER3 DNA MER1_type -1 208 1 823 336 148 17 chrX 139131724 139132316 -23467614 - L2 LINE L2 -1319 1995 1293 1063 164 22 0 chrX 139132325 139132508 -23467422 - MER5A DNA MER1_type -2 187 1 193 253 110 0 chrX 139132547 139132638 -23467292 - L2 LINE L2 -1938 1376 1276 519 218 21 58 chrX 139133355 139133543 -23466387 + MER53 DNA DNA 1 181 -8 * 535 228 25 12 chrX 139133385 139133547 -23466383 - MER53 DNA DNA -12 177 14 613 267 93 11 chrX 139134032 139134302 -23465628 - L1ME4a LINE L1 -237 5884 5593 25 51 0 0 chrX 139139216 139139255 -23460675 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chrX 139139363 139139389 -23460541 + AT_rich Low_complexity Low_complexity 1 26 0 204 40 0 0 chrX 139139983 139140008 -23459922 + (A)n Simple_repeat Simple_repeat 1 25 0 423 0 0 0 chrX 139140539 139140586 -23459344 + (TC)n Simple_repeat Simple_repeat 2 48 0 329 227 53 0 chrX 139141299 139141374 -23458556 - MIR SINE MIR -63 145 67 875 287 42 39 chrX 139141407 139141741 -23458189 + MER102b DNA MER1_type 7 341 0 24 0 0 0 chrX 139141796 139141820 -23458110 + AT_rich Low_complexity Low_complexity 1 24 0 203 333 61 35 chrX 139141831 139141945 -23457985 + L2 LINE L2 3137 3253 -19 248 290 43 32 chrX 139142569 139142662 -23457268 + L2 LINE L2 3160 3253 -19 21 0 0 0 chrX 139143349 139143370 -23456560 + AT_rich Low_complexity Low_complexity 1 21 0 345 312 28 9 chrX 139143659 139143768 -23456162 + MIR SINE MIR 38 148 -60 513 225 49 21 chrX 139143793 139143935 -23455995 + MIR SINE MIR 117 262 0 783 318 19 12 chrX 139144736 139144994 -23454936 - MIR SINE MIR 0 262 3 239 333 126 0 chrX 139145268 139145403 -23454527 + MIR SINE MIR 54 205 -57 683 263 65 26 chrX 139145425 139145657 -23454273 + MIR SINE MIR 21 261 -1 309 235 165 35 chrX 139146311 139146426 -23453504 + L2 LINE L2 3138 3267 -5 198 0 0 0 chrX 139146712 139146734 -23453196 + (T)n Simple_repeat Simple_repeat 1 22 0 1259 200 41 22 chrX 139147104 139147419 -23452511 + L1ME3A LINE L1 5840 6160 -10 686 227 18 96 chrX 139148656 139148876 -23451054 + MIR3 SINE MIR 3 205 -3 2718 155 8 14 chrX 139149453 139149970 -23449960 + L1MA8 LINE L1 5773 6286 -5 24 0 0 0 chrX 139149970 139149994 -23449936 + AT_rich Low_complexity Low_complexity 1 24 0 225 191 0 0 chrX 139149996 139150043 -23449887 + GA-rich Low_complexity Low_complexity 2 48 0 513 308 145 46 chrX 139150047 139150654 -23449276 - L2 LINE L2 -39 3233 2564 1553 200 70 14 chrX 139150994 139151349 -23448581 - MLT1E LTR MaLR -1 592 218 216 299 73 36 chrX 139151509 139151646 -23448284 - L2 LINE L2 -266 3006 2865 35 24 0 0 chrX 139153457 139153499 -23446431 + AT_rich Low_complexity Low_complexity 1 42 0 297 239 83 64 chrX 139153520 139153629 -23446301 - L2 LINE L2 -12 3260 3150 1890 141 17 10 chrX 139154268 139154558 -23445372 - AluJo SINE Alu -20 292 1 185 222 0 0 chrX 139155077 139155113 -23444817 + L3 LINE CR1 1541 1576 -1 397 235 61 0 chrX 139156212 139156344 -23443586 - L1ME4a LINE L1 -5 6116 5977 286 330 119 42 chrX 139156451 139156687 -23443243 + L2 LINE L2 2969 3222 -50 2586 143 2 45 chrX 139157602 139158090 -23441840 - MER31A LTR ERV1 -18 467 1 1171 153 0 0 chrX 139158257 139158427 -23441503 - FRAM SINE Alu -13 163 1 926 133 40 0 chrX 139158695 139158845 -23441085 - L1M2 LINE L1 -635 5656 5501 229 171 0 0 chrX 139158845 139158886 -23441044 - MER20B DNA MER1_type -383 400 360 2256 101 0 26 chrX 139158888 139159194 -23440736 + AluSx SINE Alu 1 298 -14 241 232 81 81 chrX 139159207 139159306 -23440624 - MER20B DNA MER1_type -659 124 26 1115 259 47 73 chrX 139159323 139159774 -23440156 + L2 LINE L2 2866 3304 -9 2021 139 7 3 chrX 139159790 139160093 -23439837 + AluSq SINE Alu 1 304 -9 2243 71 10 39 chrX 139160122 139160433 -23439497 - AluY SINE Alu -9 302 1 802 240 192 19 chrX 139161087 139161395 -23438535 + L2 LINE L2 2952 3312 -1 589 253 169 6 chrX 139161936 139162102 -23437828 - MIR SINE MIR -13 249 57 596 75 0 0 chrX 139162516 139162596 -23437334 - MADE1 DNA Mariner 0 80 1 233 302 0 0 chrX 139162742 139162795 -23437135 + L2 LINE L2 3246 3298 -15 524 299 90 24 chrX 139163070 139163306 -23436624 - MIR SINE MIR 0 262 18 4081 198 36 17 chrX 139163871 139164786 -23435144 + L1MB5 LINE L1 4475 5438 -736 2444 65 10 7 chrX 139164786 139165096 -23434834 + AluY SINE Alu 1 311 0 4081 198 36 17 chrX 139165096 139165835 -23434095 + L1MB5 LINE L1 5438 6161 -13 2492 64 0 0 chrX 139166743 139167041 -23432889 - AluY SINE Alu -13 298 1 600 313 22 22 chrX 139167151 139167378 -23432552 - MIR SINE MIR -5 257 31 226 206 14 41 chrX 139167480 139167553 -23432377 - MIR SINE MIR -71 191 121 680 210 24 88 chrX 139168250 139168455 -23431475 - MIR SINE MIR -70 192 1 201 253 147 0 chrX 139169248 139169323 -23430607 - L2 LINE L2 -202 3070 2985 475 224 152 61 chrX 139169580 139169745 -23430185 + MIR SINE MIR 13 192 -70 510 269 19 6 chrX 139170681 139170837 -23429093 - MER103 DNA DNA -1 165 8 314 256 22 22 chrX 139170890 139170980 -23428950 - MIR3 SINE MIR -48 160 71 762 268 63 16 chrX 139171118 139171372 -23428558 + L2 LINE L2 1783 2048 -1266 2522 206 38 41 chrX 139171377 139171958 -23427972 - L1M4 LINE L1 -5540 1002 424 938 334 75 26 chrX 139171963 139172379 -23427551 + L2 LINE L2 2506 2900 -413 453 310 9 0 chrX 139172379 139172492 -23427438 - MER81 DNA DNA 0 114 1 938 334 75 26 chrX 139172492 139172848 -23427082 + L2 LINE L2 2900 3313 0 663 240 67 34 chrX 139172969 139173148 -23426782 - MER91A DNA MER1_type -11 185 1 430 298 177 15 chrX 139173338 139173536 -23426394 + MIR SINE MIR 17 246 -16 2523 112 117 5 chrX 139173861 139174246 -23425684 + MSTA LTR MaLR 1 428 0 502 294 14 7 chrX 139174792 139174938 -23424992 - MIR SINE MIR -19 243 97 184 226 75 19 chrX 139175153 139175206 -23424724 + MIR SINE MIR 65 120 -142 297 216 54 72 chrX 139175241 139175352 -23424578 + MIR SINE MIR 104 212 -50 266 61 0 0 chrX 139175633 139175666 -23424264 + MIR SINE MIR 81 113 -149 1566 210 102 44 chrX 139175668 139176120 -23423810 + MLT1D LTR MaLR 3 480 -25 2534 135 28 8 chrX 139176188 139176544 -23423386 + THE1B LTR MaLR 1 363 -1 2489 121 6 6 chrX 139176570 139176934 -23422996 - L1PA13 LINE L1 -11 6152 5789 1972 224 28 67 chrX 139177496 139178036 -23421894 - LTR33 LTR ERVL 0 521 3 626 308 23 9 chrX 139178664 139178885 -23421045 + MIR SINE MIR 23 246 -16 762 242 23 4 chrX 139179266 139179466 -23420464 + MIR SINE MIR 25 225 -37 1917 202 122 25 chrX 139179550 139179986 -23419944 + MLT2B1 LTR ERVL 3 480 -40 748 52 11 73 chrX 139180054 139180245 -23419685 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 397 79 124 0 chrX 139180269 139180539 -23419391 + (TA)n Simple_repeat Simple_repeat 1 303 0 555 320 91 9 chrX 139230723 139230942 -23368988 + MIR SINE MIR 25 261 -1 433 161 0 0 chrX 139231349 139231430 -23368500 + L1MA7 LINE L1 6210 6290 -1 241 59 0 0 chrX 139232942 139232976 -23366954 + L1MA9 LINE L1 6278 6311 -1 554 131 0 61 chrX 139233945 139234044 -23365886 - FRAM SINE Alu -19 157 65 445 255 0 0 chrX 139234072 139234174 -23365756 - MIR SINE MIR 0 262 161 232 118 196 0 chrX 139234282 139234333 -23365597 - MLT-int LTR MaLR -187 1548 1488 24 85 0 0 chrX 139234937 139234996 -23364934 + AT_rich Low_complexity Low_complexity 1 59 0 193 133 0 0 chrX 139235025 139235055 -23364875 + L2 LINE L2 3276 3305 -8 297 0 0 0 chrX 139236378 139236411 -23363519 + (CA)n Simple_repeat Simple_repeat 2 34 0 339 324 132 39 chrX 139236862 139237248 -23362682 + L2 LINE L2 1986 2407 -907 366 194 38 156 chrX 139237322 139237482 -23362448 - MIR SINE MIR -12 250 110 367 296 69 61 chrX 139237542 139237789 -23362141 - MER102b DNA MER1_type 0 341 93 427 208 98 60 chrX 139237835 139238018 -23361912 - L1MC4 LINE L1 -16 8026 7837 1065 229 6 60 chrX 139238073 139238405 -23361525 - L1ME2 LINE L1 -11 6153 5840 1319 292 47 47 chrX 139238613 139239192 -23360738 + L3 LINE CR1 429 1007 -570 659 262 103 17 chrX 139239212 139239445 -23360485 - L2 LINE L2 -916 2398 2146 2252 145 2 42 chrX 139239449 139239849 -23360081 - MLT1B LTR MaLR -6 384 1 1016 288 98 21 chrX 139239851 139240281 -23359649 - L2 LINE L2 -1166 2148 1686 235 294 109 0 chrX 139240319 139240411 -23359519 - L2 LINE L2 -1798 1516 1415 378 313 16 15 chrX 139240516 139240646 -23359284 + MIR SINE MIR 20 148 -70 474 332 127 5 chrX 139240935 139241147 -23358783 - MIR SINE MIR -13 249 8 2165 117 13 0 chrX 139241368 139241667 -23358263 - AluSq SINE Alu -10 303 1 491 319 53 21 chrX 139241723 139241911 -23358019 - MIR3 SINE MIR -8 200 7 28 0 0 0 chrX 139242105 139242133 -23357797 + AT_rich Low_complexity Low_complexity 1 28 0 243 313 0 0 chrX 139242967 139243031 -23356899 - L2 LINE L2 -2 3270 3207 201 182 0 0 chrX 139243535 139243568 -23356362 + T-rich Low_complexity Low_complexity 1 33 0 466 278 14 42 chrX 139243691 139243835 -23356095 + MIR3 SINE MIR 8 147 -61 600 234 126 0 chrX 139243862 139244029 -23355901 + MIR SINE MIR 62 249 -13 1128 291 114 27 chrX 139245618 139246144 -23353786 + L3 LINE CR1 1005 1576 -1 593 330 43 91 chrX 139246212 139246295 -23353635 - L2 LINE L2 0 3272 3187 1552 174 8 0 chrX 139246295 139246542 -23353388 + AluJo SINE Alu 42 290 -22 593 330 43 91 chrX 139246542 139246922 -23353008 - L2 LINE L2 -85 3187 2831 1381 186 68 96 chrX 139247687 139248155 -23351775 + LTR68 LTR ERV1 1 455 -285 268 148 0 82 chrX 139248434 139248495 -23351435 - L2 LINE L2 0 3313 3258 24 0 0 0 chrX 139249311 139249335 -23350595 + AT_rich Low_complexity Low_complexity 1 24 0 3633 202 56 33 chrX 139249493 139249701 -23350229 + L1MB7 LINE L1 752 954 -5692 252 59 0 0 chrX 139249701 139249735 -23350195 + (CA)n Simple_repeat Simple_repeat 1 34 0 3633 202 56 33 chrX 139249735 139250831 -23349099 + L1MB7 LINE L1 954 2096 -4550 27 0 0 0 chrX 139250835 139250862 -23349068 + AT_rich Low_complexity Low_complexity 1 27 0 812 160 49 7 chrX 139250868 139251012 -23348918 - FRAM SINE Alu -26 150 1 466 272 73 19 chrX 139251079 139251285 -23348645 + L1MB7 LINE L1 2265 2481 -4165 2742 199 36 14 chrX 139251299 139251444 -23348486 + L1MB7 LINE L1 4679 4819 -1863 2000 158 55 0 chrX 139251444 139251774 -23348156 - MER7A DNA MER2_type 0 346 1 2742 199 36 14 chrX 139251774 139252465 -23347465 + L1MB7 LINE L1 4819 5493 -1189 2229 50 0 0 chrX 139252465 139252724 -23347206 - AluY SINE Alu -18 293 35 2742 199 36 14 chrX 139252724 139253803 -23346127 + L1MB7 LINE L1 5493 6665 -17 539 248 9 0 chrX 139254149 139254258 -23345672 + MER81 DNA DNA 5 114 0 892 278 30 9 chrX 139254648 139254878 -23345052 - MIR SINE MIR -27 235 1 964 301 87 21 chrX 139255588 139256140 -23343790 - L2 LINE L2 -6 3307 2722 342 295 55 23 chrX 139257309 139257526 -23342404 - LTR40c LTR ERVL -73 392 169 2148 114 0 25 chrX 139257786 139258102 -23341828 + AluSc SINE Alu 1 308 -1 1213 172 13 40 chrX 139258344 139258571 -23341359 - MER58A DNA MER1_type 0 224 4 3005 229 42 48 chrX 139258604 139258695 -23341235 + L1ME1 LINE L1 3680 3770 -2376 7200 48 1 3 chrX 139258695 139259609 -23340321 + L1PA7 LINE L1 5235 6146 -8 3005 229 42 48 chrX 139259609 139260610 -23339320 + L1ME1 LINE L1 3770 4765 -1381 1156 136 0 0 chrX 139260616 139260792 -23339138 + AluSq SINE Alu 131 306 -7 2005 226 38 17 chrX 139260797 139261584 -23338346 + L1ME1 LINE L1 4790 5592 -572 22155 145 32 24 chrX 139261596 139262721 -23337209 - L1MA2 LINE L1 -1 7722 6608 2300 105 51 14 chrX 139262721 139263072 -23336858 - THE1B LTR MaLR 0 364 1 22155 145 32 24 chrX 139263072 139268358 -23331572 - L1MA2 LINE L1 -1115 6608 1238 2207 115 0 3 chrX 139268358 139268670 -23331260 + AluY SINE Alu 1 311 0 22155 145 32 24 chrX 139268670 139269908 -23330022 - L1MA2 LINE L1 -6485 1238 11 1727 198 17 48 chrX 139269908 139270050 -23329880 + L1ME1 LINE L1 5579 5724 -610 864 188 129 5 chrX 139270050 139270236 -23329694 + MER63A DNA MER1_type 1 209 -1 1727 198 17 48 chrX 139270236 139270652 -23329278 + L1ME1 LINE L1 5724 6331 -3 186 262 99 81 chrX 139270760 139270932 -23328998 - L3b LINE CR1 -97 1486 1312 2106 139 7 0 chrX 139271107 139271408 -23328522 + AluSx SINE Alu 2 304 -8 1023 188 0 16 chrX 139271417 139271609 -23328321 - MIR SINE MIR -21 241 53 1786 178 3 0 chrX 139271686 139271972 -23327958 + AluJo SINE Alu 5 291 -21 398 257 73 46 chrX 139272051 139272269 -23327661 + L1ME4a LINE L1 5896 6119 -2 2254 68 0 4 chrX 139273110 139273413 -23326517 + AluSc SINE Alu 1 302 0 387 0 0 0 chrX 139273644 139273687 -23326243 + (TG)n Simple_repeat Simple_repeat 1 43 0 335 360 26 0 chrX 139274390 139274504 -23325426 + MIR SINE MIR 87 203 -59 383 271 65 0 chrX 139274702 139274809 -23325121 - MER5A DNA MER1_type -48 141 28 8541 233 26 32 chrX 139274877 139276776 -23323154 - L1M4 LINE L1 -1042 5104 3195 2334 86 10 0 chrX 139276776 139277066 -23322864 + AluY SINE Alu 1 293 -18 8541 233 26 32 chrX 139277066 139277382 -23322548 - L1M4 LINE L1 -2951 3195 2904 1748 167 7 3 chrX 139277382 139277681 -23322249 - AluJb SINE Alu -2 310 11 8541 233 26 32 chrX 139277681 139277992 -23321938 - L1M4 LINE L1 -3242 2904 2593 1114 236 96 22 chrX 139277995 139278395 -23321535 - L1ME LINE L1 -377 5785 5358 294 281 56 0 chrX 139278470 139278559 -23321371 + MIR SINE MIR 14 107 -155 4436 217 88 5 chrX 139278675 139279879 -23320051 - L1MD2 LINE L1 -2 6357 5055 380 145 81 0 chrX 139279903 139279965 -23319965 - L1M4c LINE L1 -5895 489 423 * 476 185 3 0 chrX 139279951 139280052 -23319878 + L1MA3 LINE L1 6041 6146 -159 306 279 97 26 chrX 139280061 139280215 -23319715 + MIR SINE MIR 39 203 -59 201 139 0 28 chrX 139280482 139280518 -23319412 - L3b LINE CR1 -9 1574 1540 838 230 0 6 chrX 139281411 139281585 -23318345 - MIR SINE MIR -5 257 85 653 291 69 22 chrX 139281638 139281940 -23317990 + MLT1I LTR MaLR 31 312 -97 302 323 113 52 chrX 139282019 139282310 -23317620 - MLT1I LTR MaLR -34 375 67 227 158 0 26 chrX 139282432 139282470 -23317460 - MIR SINE MIR -188 74 38 405 126 13 18 chrX 139282470 139282487 -23317443 - L1M4 LINE L1 -503 5681 5665 2099 194 25 9 chrX 139282487 139282924 -23317006 - L1MB7 LINE L1 -11 6173 5730 405 126 13 18 chrX 139282924 139282982 -23316948 - L1M4 LINE L1 -519 5665 5612 * 1396 213 35 65 chrX 139282980 139283382 -23316548 - L1M4 LINE L1 -2759 3387 3002 2301 98 0 3 chrX 139283382 139283677 -23316253 + AluSq SINE Alu 1 294 -19 1396 213 35 65 chrX 139283677 139283786 -23316144 - L1M4 LINE L1 -3144 3002 2891 276 146 0 0 chrX 139283786 139283827 -23316103 - MSTA LTR MaLR 0 428 388 1742 144 0 0 chrX 139283827 139284077 -23315853 + AluSq SINE Alu 1 250 -63 257 154 154 19 chrX 139284083 139284135 -23315795 + Tigger3(Golem) DNA MER2_type 2980 3038 0 489 200 97 48 chrX 139284149 139284314 -23315616 + MER34 LTR ERV1 370 542 0 2625 266 35 14 chrX 139284370 139285095 -23314835 - L2 LINE L2 -1254 2060 1321 204 237 0 0 chrX 139285090 139285128 -23314802 + MIR3 SINE MIR 161 198 -10 * 347 246 9 36 chrX 139285219 139285329 -23314601 + L2 LINE L2 496 602 -2712 21 0 0 0 chrX 139285634 139285655 -23314275 + AT_rich Low_complexity Low_complexity 1 21 0 1522 148 58 61 chrX 139285888 139286313 -23313617 + AluJb SINE Alu 1 424 0 298 312 128 18 chrX 139286567 139286676 -23313254 + L2 LINE L2 3150 3270 -2 35 24 0 0 chrX 139286824 139286866 -23313064 + AT_rich Low_complexity Low_complexity 1 42 0 22 80 0 0 chrX 139287311 139287361 -23312569 + AT_rich Low_complexity Low_complexity 1 50 0 454 287 87 26 chrX 139287738 139287933 -23311997 - MIR SINE MIR -41 221 15 259 324 117 7 chrX 139288090 139288235 -23311695 + L3 LINE CR1 1182 1342 -235 678 258 144 9 chrX 139288241 139288470 -23311460 - MIR SINE MIR 0 262 3 1140 280 30 45 chrX 139288811 139289282 -23310648 + L2 LINE L2 2415 2878 -436 1003 249 30 17 chrX 139289283 139289520 -23310410 + MIR SINE MIR 2 241 -21 392 361 13 0 chrX 139289529 139289684 -23310246 + L2 LINE L2 2908 3064 -249 192 309 0 0 chrX 139290246 139290288 -23309642 + L2 LINE L2 3210 3251 -21 540 280 140 0 chrX 139290294 139290480 -23309450 - MIR SINE MIR -4 258 47 752 229 207 0 chrX 139290613 139290792 -23309138 + MER20 DNA MER1_type 4 219 0 666 201 89 11 chrX 139291852 139292031 -23307899 + L1MB5 LINE L1 5976 6168 -6 231 125 0 0 chrX 139292958 139292998 -23306932 + (CA)n Simple_repeat Simple_repeat 1 40 0 219 306 0 0 chrX 139293294 139293366 -23306564 + G-rich Low_complexity Low_complexity 1 72 0 384 22 0 0 chrX 139294187 139294232 -23305698 + (CA)n Simple_repeat Simple_repeat 2 46 0 216 86 0 0 chrX 139294987 139295022 -23304908 + (T)n Simple_repeat Simple_repeat 1 35 0 249 266 193 0 chrX 139295965 139296074 -23303856 - MIR SINE MIR -14 248 119 210 91 0 0 chrX 139298742 139298775 -23301155 + (CGGGGG)n Simple_repeat Simple_repeat 3 35 0 285 259 0 12 chrX 139299459 139299544 -23300386 + CT-rich Low_complexity Low_complexity 2 85 0 576 183 17 28 chrX 139299887 139300067 -23299863 + GA-rich Low_complexity Low_complexity 2 179 0 748 156 0 38 chrX 139300081 139300267 -23299663 + GA-rich Low_complexity Low_complexity 1 179 0 642 126 17 40 chrX 139300291 139300465 -23299465 + GA-rich Low_complexity Low_complexity 2 171 0 25970 122 28 75 chrX 139301370 139305817 -23294113 + L1P LINE L1 12 4215 -1931 2338 119 0 0 chrX 139305817 139306129 -23293801 + AluSx SINE Alu 1 312 0 25970 122 28 75 chrX 139306129 139306516 -23293414 + L1P LINE L1 4215 4619 -1527 238 211 18 0 chrX 139306599 139306656 -23293274 + FLAM SINE Alu 51 108 -25 270 56 0 0 chrX 139306683 139306719 -23293211 + (GGA)n Simple_repeat Simple_repeat 1 36 0 7486 51 19 0 chrX 139306739 139308257 -23291673 + L1PA7 LINE L1 4611 6153 -1 469 203 109 47 chrX 139308397 139308525 -23291405 + MIR3 SINE MIR 45 180 -28 1698 132 11 4 chrX 139308998 139309263 -23290667 - AluSx SINE Alu -45 267 1 1453 174 107 75 chrX 139310644 139311028 -23288902 + MSTD LTR MaLR 1 396 0 1794 156 19 0 chrX 139311141 139311448 -23288482 + MER33 DNA MER1_type 1 313 -11 216 278 67 33 chrX 139311541 139311631 -23288299 + L2 LINE L2 3154 3246 -26 335 303 0 0 chrX 139311632 139311721 -23288209 + MER34 LTR ERV1 8 96 -446 * 990 224 115 38 chrX 139311707 139312020 -23287910 + LTR48 LTR ERV1 157 493 -294 378 248 91 11 chrX 139312038 139312204 -23287726 + LTR48 LTR ERV1 370 538 -4 461 272 56 56 chrX 139312334 139312514 -23287416 + MIR3 SINE MIR 14 193 -15 254 194 0 179 chrX 139313097 139313231 -23286699 - MER102a DNA MER1_type 0 330 221 210 37 0 0 chrX 139313249 139313276 -23286654 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 230 238 0 0 chrX 139313300 139313342 -23286588 - MER102a DNA MER1_type -263 67 26 249 352 38 0 chrX 139313945 139314050 -23285880 + L2 LINE L2 3139 3247 -25 1145 157 11 6 chrX 139314117 139314290 -23285640 - MER7A DNA MER2_type 0 337 164 1101 263 137 30 chrX 139314290 139314944 -23284986 + LTR51 LTR ERV1 1 665 -6 1006 139 91 0 chrX 139314979 139315144 -23284786 - MER7A DNA MER2_type -168 178 1 469 226 65 0 chrX 139315288 139315381 -23284549 - L2 LINE L2 -20 3252 3154 241 374 29 42 chrX 139315414 139315652 -23284278 + L2 LINE L2 3037 3271 -1 2396 67 7 7 chrX 139315788 139316085 -23283845 + AluSc SINE Alu 1 297 -12 210 118 0 0 chrX 139317659 139317693 -23282237 + (TG)n Simple_repeat Simple_repeat 2 35 0 1078 260 56 92 chrX 139317986 139318432 -23281498 - LTR16A LTR ERVL 0 450 21 274 309 147 39 chrX 139318453 139318915 -23281015 + L2 LINE L2 1836 2347 -967 1713 188 53 61 chrX 139318915 139319308 -23280622 - MLT1B LTR MaLR 0 390 1 2161 190 47 7 chrX 139319308 139319714 -23280216 - MLT1B-int LTR MaLR 0 1735 1314 304 266 13 0 chrX 139319897 139319976 -23279954 - MLT1B-int LTR MaLR -968 767 688 571 258 46 5 chrX 139320049 139320240 -23279690 - MLT1B-int LTR MaLR -488 883 594 674 213 77 0 chrX 139320248 139320403 -23279527 - MLT1B-int LTR MaLR -1204 167 1 1313 162 157 103 chrX 139320403 139320773 -23279157 - MLT1B LTR MaLR 0 390 1 380 206 62 94 chrX 139320774 139320934 -23278996 + L2 LINE L2 2344 2498 -816 2886 204 39 4 chrX 139320936 139321474 -23278456 - MLT1F1 LTR MaLR 0 567 11 190 264 75 0 chrX 139321508 139321561 -23278369 + L2 LINE L2 2593 2649 -665 198 227 11 91 chrX 139321667 139321755 -23278175 + L2 LINE L2 2883 2963 -309 541 284 106 10 chrX 139321776 139321984 -23277946 + MLT1H LTR MaLR 30 257 -292 510 17 0 0 chrX 139322053 139322112 -23277818 + (CA)n Simple_repeat Simple_repeat 1 59 0 322 198 26 138 chrX 139322132 139322248 -23277682 + MLT1H LTR MaLR 431 533 -16 247 373 62 56 chrX 139322274 139322580 -23277350 + L2 LINE L2 2965 3272 0 27 0 0 0 chrX 139322705 139322732 -23277198 + AT_rich Low_complexity Low_complexity 1 27 0 234 241 52 0 chrX 139323361 139323419 -23276511 + MIR SINE MIR 201 261 -1 227 360 0 0 chrX 139324081 139324156 -23275774 + L2 LINE L2 3148 3222 -50 261 183 0 0 chrX 139324189 139324249 -23275681 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 1118 200 28 14 chrX 139324266 139324481 -23275449 - MER20 DNA MER1_type 0 219 2 2777 192 89 80 chrX 139324661 139325189 -23274741 - Charlie2 DNA MER1_type 0 2862 2341 1766 188 0 3 chrX 139325189 139325481 -23274449 - AluJb SINE Alu -21 291 1 2777 192 89 80 chrX 139325481 139325799 -23274131 - Charlie2 DNA MER1_type -521 2341 2028 1920 125 0 7 chrX 139325799 139326071 -23273859 + AluSg SINE Alu 38 307 -3 3839 164 20 5 chrX 139326075 139326727 -23273203 - L1MB3 LINE L1 -2 6181 5520 2777 192 89 80 chrX 139326727 139326868 -23273062 - Charlie2 DNA MER1_type -836 2026 1859 916 241 4 53 chrX 139326879 139327124 -23272806 - Charlie2 DNA MER1_type -2464 318 86 763 121 0 0 chrX 139327128 139327227 -23272703 - AluS SINE Alu -210 102 4 1193 134 0 21 chrX 139327228 139327422 -23272508 + AluSg/x SINE Alu 122 311 -1 1459 125 99 0 chrX 139327625 139327857 -23272073 + AluSx SINE Alu 38 292 -20 229 329 11 108 chrX 139327862 139328224 -23271706 - L2 LINE L2 -115 3157 2831 1887 144 0 23 chrX 139328307 139328613 -23271317 - AluJo SINE Alu -13 299 1 1679 179 3 27 chrX 139329054 139329355 -23270575 + AluJo SINE Alu 1 294 -18 1701 166 10 24 chrX 139329526 139329815 -23270115 + AluJo SINE Alu 1 285 -27 288 0 0 0 chrX 139329816 139329848 -23270082 + (GA)n Simple_repeat Simple_repeat 1 32 0 2137 238 45 66 chrX 139330022 139330628 -23269302 + MLT1E LTR MaLR 1 593 0 1136 211 57 16 chrX 139332362 139332609 -23267321 - MIR SINE MIR -5 257 1 267 337 33 11 chrX 139332840 139332932 -23266998 + L2 LINE L2 2970 3063 -209 902 239 35 31 chrX 139333037 139333069 -23266861 - MIR SINE MIR 0 262 232 2000 127 41 96 chrX 139333069 139333159 -23266771 - MER47A DNA MER2_type -1957 366 273 2245 117 3 0 chrX 139333159 139333468 -23266462 + AluSx SINE Alu 1 310 -2 2000 127 41 96 chrX 139333468 139333674 -23266256 - MER47A DNA MER2_type -2050 273 93 1965 94 79 7 chrX 139333674 139333951 -23265979 + AluSx SINE Alu 1 297 -15 2000 127 41 96 chrX 139333951 139334040 -23265890 - MER47A DNA MER2_type -2230 93 1 902 239 35 31 chrX 139334040 139334266 -23265664 - MIR SINE MIR -30 232 3 388 279 10 10 chrX 139334539 139334643 -23265287 - L2 LINE L2 0 3313 3210 410 105 0 53 chrX 139334794 139334870 -23265060 - L1PA7 LINE L1 -1 6153 6082 269 200 176 0 chrX 139334926 139335011 -23264919 + MIR SINE MIR 50 149 -59 220 156 0 22 chrX 139335043 139335088 -23264842 + MIR SINE MIR 110 153 -109 3802 165 45 10 chrX 139335327 139336152 -23263778 - L1MC4 LINE L1 -8 8034 7039 396 79 3 63 chrX 139336394 139336479 -23263451 - MLT2B2 LTR ERVL 0 515 440 1553 232 26 24 chrX 139336480 139336551 -23263379 - ERVL-B3 LTR ERVL -5132 632 563 7529 50 0 0 chrX 139336551 139336948 -23262982 - L1PA6 LINE L1 -3 6151 5755 2392 78 0 0 chrX 139336948 139337241 -23262689 - AluY SINE Alu -18 293 1 7529 50 0 0 chrX 139337241 139337853 -23262077 - L1PA6 LINE L1 -398 5756 5162 1553 232 26 24 chrX 139337853 139338122 -23261808 - ERVL-B3 LTR ERVL -5201 563 291 356 129 14 14 chrX 139338120 139338190 -23261740 - ERVL-B3 LTR ERVL -5584 70 1 * 2935 174 24 88 chrX 139338190 139338782 -23261148 - MLT2B3 LTR ERVL 0 554 1 624 294 35 10 chrX 139338782 139338979 -23260951 - MIR SINE MIR -60 202 1 203 91 0 0 chrX 139339576 139339609 -23260321 - L2 LINE L2 0 3313 3281 207 344 88 107 chrX 139339813 139340075 -23259855 - L2 LINE L2 0 3272 3016 342 0 0 0 chrX 139340501 139340539 -23259391 + (CA)n Simple_repeat Simple_repeat 2 39 0 506 263 90 0 chrX 139341026 139341182 -23258748 + MIR SINE MIR 37 206 -56 357 266 55 18 chrX 139341587 139341696 -23258234 - MIR SINE MIR -74 188 76 1002 258 174 52 chrX 139341736 139341814 -23258116 - L2 LINE L2 0 3313 3246 192 77 0 0 chrX 139341814 139341840 -23258090 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1002 258 174 52 chrX 139341840 139342630 -23257300 - L2 LINE L2 -67 3246 2303 245 263 0 18 chrX 139342604 139342661 -23257269 - L2 LINE L2 -49 3223 3168 * 330 308 0 0 chrX 139342886 139342964 -23256966 + L2 LINE L2 3195 3272 0 402 329 23 103 chrX 139343337 139343726 -23256204 - L2 LINE L2 -49 3223 2866 1800 143 11 11 chrX 139344107 139344387 -23255543 + AluJo SINE Alu 3 282 -30 239 91 0 23 chrX 139344390 139344434 -23255496 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 666 299 39 0 chrX 139344958 139345165 -23254765 + MIR SINE MIR 4 218 -44 257 308 93 0 chrX 139345554 139345661 -23254269 + L1ME4a LINE L1 5992 6108 -13 207 0 0 0 chrX 139348567 139348590 -23251340 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1279 179 113 58 chrX 139348986 139349260 -23250670 - AluJo SINE Alu -13 289 1 548 263 34 59 chrX 139349467 139349790 -23250140 - L1MC5 LINE L1 -36 7925 7611 287 254 0 0 chrX 139350654 139350717 -23249213 + L2 LINE L2 3251 3313 0 776 251 59 53 chrX 139351240 139351579 -23248351 + L1ME4a LINE L1 5586 5926 -195 227 238 0 0 chrX 139351697 139351739 -23248191 + polypurine Low_complexity Low_complexity 3 44 0 291 254 0 0 chrX 139353311 139353374 -23246556 - L2 LINE L2 0 3272 3210 327 25 0 0 chrX 139353505 139353545 -23246385 + (TG)n Simple_repeat Simple_repeat 2 41 0 309 214 10 87 chrX 139353562 139353665 -23246265 + MIR SINE MIR 122 216 -46 1878 130 49 0 chrX 139353942 139354226 -23245704 + AluSx SINE Alu 14 311 -1 4119 170 32 13 chrX 139354459 139355240 -23244690 + L1MA7 LINE L1 4534 5329 -817 459 198 0 0 chrX 139355241 139355322 -23244608 + AluSg/x SINE Alu 205 285 -24 3022 129 6 19 chrX 139355323 139355369 -23244561 + L1MA7 LINE L1 5321 5366 -925 2269 123 10 0 chrX 139355369 139355677 -23244253 + AluSx SINE Alu 1 311 -1 3022 129 6 19 chrX 139355677 139356109 -23243821 + L1MA7 LINE L1 5366 5793 -498 295 141 31 0 chrX 139356109 139356173 -23243757 + (TA)n Simple_repeat Simple_repeat 1 66 0 277 109 0 55 chrX 139356173 139356228 -23243702 + L1MA7 LINE L1 5782 5833 -479 * 7209 48 7 0 chrX 139356226 139357271 -23242659 + L1PA5 LINE L1 5119 6170 0 2507 124 74 54 chrX 139357274 139357735 -23242195 + L1MA7 LINE L1 5822 6291 0 1207 265 125 54 chrX 139358072 139358282 -23241648 + Tigger8 DNA MER2_type 27 221 -445 1569 168 90 0 chrX 139358282 139358550 -23241380 + AluJo SINE Alu 1 292 -20 1207 265 125 54 chrX 139358550 139358932 -23240998 + Tigger8 DNA MER2_type 221 661 -5 194 273 42 91 chrX 139359196 139359310 -23240620 + L2 LINE L2 3162 3269 -44 2114 175 39 21 chrX 139359310 139359693 -23240237 + MLT1B LTR MaLR 1 390 0 194 273 42 91 chrX 139359693 139359721 -23240209 + L2 LINE L2 3269 3297 -16 2310 137 3 0 chrX 139359779 139360115 -23239815 - THE1B LTR MaLR 0 364 28 996 214 19 28 chrX 139360115 139360330 -23239600 - MIR SINE MIR -17 245 33 1991 109 11 0 chrX 139360337 139360603 -23239327 - AluSq SINE Alu -44 269 1 551 269 11 65 chrX 139361080 139361119 -23238811 - MIR SINE MIR -81 181 141 2904 13 0 0 chrX 139361119 139361434 -23238496 - AluYb8 SINE Alu -3 315 1 551 269 11 65 chrX 139361434 139361580 -23238350 - MIR SINE MIR -121 141 6 313 233 36 150 chrX 139361984 139362177 -23237753 - L3 LINE CR1 -6 1571 1401 601 285 58 62 chrX 139362808 139363068 -23236862 - MIR SINE MIR -1 261 3 229 299 78 24 chrX 139363153 139363320 -23236610 + L2 LINE L2 2729 2904 -410 2259 99 13 22 chrX 139363984 139364296 -23235634 - AluSq SINE Alu -4 309 1 1315 267 12 3 chrX 139364322 139364648 -23235282 + L1ME3 LINE L1 5834 6162 0 185 284 114 0 chrX 139364950 139365038 -23234892 + L2 LINE L2 2960 3057 -215 553 189 28 0 chrX 139365109 139365215 -23234715 + MER5A DNA MER1_type 4 112 -77 260 252 129 41 chrX 139365285 139365432 -23234498 - MER5B DNA MER1_type -8 170 11 974 269 34 65 chrX 139366257 139366306 -23233624 + L1ME4a LINE L1 5440 5489 -632 1641 223 86 24 chrX 139366306 139366679 -23233251 - MSTD LTR MaLR 0 396 1 974 269 34 65 chrX 139366679 139366934 -23232996 + L1ME4a LINE L1 5489 5726 -395 2348 115 0 0 chrX 139366934 139367246 -23232684 + AluSx SINE Alu 1 312 0 974 269 34 65 chrX 139367246 139367400 -23232530 + L1ME4a LINE L1 5726 5883 -238 2115 95 32 0 chrX 139367528 139367813 -23232117 + L1PA13 LINE L1 5866 6159 -4 253 172 246 52 chrX 139368498 139368632 -23231298 - MER112 DNA MER1_type -94 166 7 767 306 53 0 chrX 139370226 139370471 -23229459 + MIR SINE MIR 2 259 -3 570 75 12 12 chrX 139370712 139370792 -23229138 - MADE1 DNA Mariner 0 80 1 2607 55 0 0 chrX 139370851 139371161 -23228769 - AluY SINE Alu -1 310 1 1909 148 41 0 chrX 139371223 139371514 -23228416 + AluSx SINE Alu 3 305 -7 297 282 103 62 chrX 139371619 139371814 -23228116 - L3 LINE CR1 -104 1473 1271 1543 194 49 9 chrX 139373020 139373345 -23226585 - L1MD3 LINE L1 -1 7994 7657 2268 110 20 0 chrX 139373359 139373660 -23226270 - AluSq SINE Alu -6 307 1 5166 138 23 26 chrX 139373734 139374617 -23225313 + L1MA8 LINE L1 5409 6288 -3 298 265 31 31 chrX 139374637 139374735 -23225195 + MER103 DNA DNA 67 164 -2 256 344 92 12 chrX 139375238 139375401 -23224529 + L2 LINE L2 3096 3271 -1 2117 144 0 0 chrX 139375417 139375722 -23224208 - AluSx SINE Alu -7 305 1 608 253 17 34 chrX 139375731 139375909 -23224021 - MIR SINE MIR -53 209 35 744 177 23 0 chrX 139377220 139377395 -23222535 - Charlie5 DNA MER1_type 0 2621 2443 1627 194 19 3 chrX 139377428 139377753 -23222177 - L1PBa LINE L1 -5817 1046 717 15269 83 0 0 chrX 139377999 139380781 -23219149 + L1PA7 LINE L1 3415 6196 0 2120 117 4 0 chrX 139380943 139381275 -23218655 + AluSp SINE Alu 1 333 0 514 290 45 97 chrX 139382018 139382328 -23217602 - L2 LINE L2 -8 3264 2971 * 658 333 84 35 chrX 139382323 139382692 -23217238 - L2 LINE L2 -685 2629 2243 1225 292 97 49 chrX 139382692 139382778 -23217152 + Tigger8 DNA MER2_type 1 81 -585 705 230 0 0 chrX 139382778 139382904 -23217026 - FLAM_A SINE Alu -7 126 1 1225 292 97 49 chrX 139382904 139383424 -23216506 + Tigger8 DNA MER2_type 81 636 -30 3227 163 22 70 chrX 139383481 139384063 -23215867 + MLT2B3 LTR ERVL 1 554 0 2565 114 5 30 chrX 139384119 139384488 -23215442 - THE1B LTR MaLR -4 360 1 702 127 64 0 chrX 139385025 139385190 -23214740 - AluSp/q SINE Alu 0 338 167 240 216 208 32 chrX 139385886 139386011 -23213919 - MIR SINE MIR -30 232 86 326 304 94 40 chrX 139386937 139387138 -23212792 - L2 LINE L2 -189 3083 2872 2319 89 16 3 chrX 139387222 139387526 -23212404 + AluSq SINE Alu 1 308 -5 261 83 0 0 chrX 139387810 139387846 -23212084 + (CA)n Simple_repeat Simple_repeat 1 36 0 988 249 8 13 chrX 139387875 139388112 -23211818 + L2 LINE L2 2647 2882 -432 362 294 42 137 chrX 139388539 139388941 -23210989 + L2 LINE L2 2909 3272 0 354 262 8 48 chrX 139389350 139389476 -23210454 + MIR3 SINE MIR 81 201 -7 462 294 8 0 chrX 139390135 139390261 -23209669 + MIR SINE MIR 24 150 -112 22 0 0 0 chrX 139390262 139390284 -23209646 + AT_rich Low_complexity Low_complexity 1 22 0 225 121 0 0 chrX 139390284 139390317 -23209613 - L1MA9 LINE L1 -5 6307 6275 2357 88 7 0 chrX 139390319 139390613 -23209317 - AluSq SINE Alu -17 296 1 2655 121 7 25 chrX 139390616 139391021 -23208909 - L1PA15 LINE L1 -4 6161 5764 324 282 8 40 chrX 139391021 139391145 -23208785 + MIR SINE MIR 141 260 -2 623 314 96 5 chrX 139391283 139391503 -23208427 - MIR SINE MIR -21 241 2 411 286 71 24 chrX 139391977 139392145 -23207785 - MIR SINE MIR -12 250 75 1755 282 48 46 chrX 139392145 139392727 -23207203 + MER115 DNA AcHobo 22 604 -89 348 337 83 36 chrX 139392802 139393054 -23206876 + L2 LINE L2 3004 3267 -5 659 257 5 55 chrX 139393195 139393397 -23206533 - L1MC5 LINE L1 -48 7913 7722 2288 97 0 22 chrX 139393411 139393730 -23206200 + AluSx SINE Alu 1 312 0 2428 97 0 0 chrX 139394599 139394909 -23205021 + AluSx SINE Alu 1 310 -2 613 225 8 0 chrX 139395515 139395635 -23204295 - FLAM_A SINE Alu -12 121 1 213 109 79 10 chrX 139395820 139395921 -23204009 + (TA)n Simple_repeat Simple_repeat 2 109 0 434 197 33 82 chrX 139396409 139396531 -23203399 + MIR SINE MIR 34 149 -113 648 179 73 24 chrX 139396536 139396659 -23203271 + FLAM_A SINE Alu 1 129 -4 1826 112 10 64 chrX 139396668 139396799 -23203131 + AluSx SINE Alu 5 142 -201 1998 103 3 45 chrX 139396799 139397091 -23202839 + AluSx SINE Alu 1 280 -32 261 0 0 0 chrX 139397091 139397120 -23202810 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 1826 112 10 64 chrX 139397120 139397342 -23202588 + AluSx SINE Alu 140 343 0 402 250 17 16 chrX 139397383 139397542 -23202388 + L1ME3 LINE L1 5236 5395 -751 820 116 2 3 chrX 139397549 139397674 -23202256 + MLT1A1 LTR MaLR 1 111 -254 552 120 50 0 chrX 139397675 139397829 -23202101 - L1MA4A LINE L1 -72 6231 6009 325 111 0 0 chrX 139397829 139397874 -23202056 - AluSq/x SINE Alu -190 112 68 1288 205 4 12 chrX 139397880 139398129 -23201801 + MLT1A1 LTR MaLR 119 365 0 3057 152 19 58 chrX 139398219 139398928 -23201002 + L1MA4A LINE L1 5546 6284 -19 796 302 119 12 chrX 139398970 139399380 -23200550 + L1ME3 LINE L1 5494 5947 -215 412 302 0 0 chrX 139399649 139399755 -23200175 + MIR SINE MIR 151 256 -6 219 247 34 67 chrX 139399927 139400016 -23199914 - L3b LINE CR1 -199 1384 1299 967 236 102 63 chrX 139400083 139400530 -23199400 - MLT1H LTR MaLR 0 549 47 238 368 53 0 chrX 139400760 139400855 -23199075 - L2 LINE L2 -23 3249 3150 224 197 0 28 chrX 139401290 139401361 -23198569 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 187 261 0 0 chrX 139403526 139403572 -23196358 - L2 LINE L2 -3 3310 3265 870 224 6 0 chrX 139403765 139403935 -23195995 + L1MB4 LINE L1 4834 5004 -1142 1207 240 3 11 chrX 139403937 139404224 -23195706 - L1MA9 LINE L1 -55 6257 5973 1956 110 0 4 chrX 139404224 139404488 -23195442 - AluSg1 SINE Alu -46 263 1 24 32 0 0 chrX 139404638 139404669 -23195261 + AT_rich Low_complexity Low_complexity 1 31 0 4774 151 28 33 chrX 139404680 139404900 -23195030 + L1MB4 LINE L1 4986 5206 -974 2077 114 4 0 chrX 139404900 139405181 -23194749 + AluSx SINE Alu 24 305 -7 4774 151 28 33 chrX 139405181 139405458 -23194472 + L1MB4 LINE L1 5206 5483 -697 190 0 67 0 chrX 139405458 139405488 -23194442 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4774 151 28 33 chrX 139405488 139406193 -23193737 + L1MB4 LINE L1 5483 6180 0 2182 119 0 13 chrX 139406215 139406540 -23193390 - AluSg SINE Alu 0 310 1 333 0 0 0 chrX 139406623 139406660 -23193270 + (CA)n Simple_repeat Simple_repeat 2 38 0 262 263 105 0 chrX 139406732 139406825 -23193105 + L2 LINE L2 3096 3198 -74 384 291 257 5 chrX 139406825 139407031 -23192899 + MIR SINE MIR 1 258 -4 32 0 0 0 chrX 139407034 139407066 -23192864 + AT_rich Low_complexity Low_complexity 1 32 0 202 216 0 0 chrX 139407097 139407148 -23192782 + (TTA)n Simple_repeat Simple_repeat 3 53 0 2653 126 19 9 chrX 139407167 139407589 -23192341 + L1MA5 LINE L1 5874 6299 -1 22 80 0 0 chrX 139407619 139407669 -23192261 + AT_rich Low_complexity Low_complexity 1 50 0 1782 145 3 26 chrX 139408117 139408421 -23191509 - AluJb SINE Alu -11 301 5 2553 68 3 7 chrX 139408480 139408847 -23191083 + L1P LINE L1 4945 5303 -843 223 321 83 36 chrX 139409126 139409210 -23190720 - L2 LINE L2 -44 3228 3141 456 278 162 0 chrX 139409537 139409724 -23190206 - MIR SINE MIR -10 252 36 2188 95 0 7 chrX 139410497 139410818 -23189112 + AluSq SINE Alu 1 313 0 925 70 94 0 chrX 139410847 139410975 -23188955 + AluSg/x SINE Alu 138 277 -35 230 253 0 53 chrX 139411033 139411128 -23188802 - L1MC4 LINE L1 -1339 6703 6614 * 258 221 47 12 chrX 139411044 139411130 -23188800 + L1MC4 LINE L1 6615 6703 -1339 228 174 0 0 chrX 139411138 139411184 -23188746 + LTR66 LTR ERVL 394 439 -171 228 174 0 0 chrX 139411164 139411210 -23188720 - LTR66 LTR ERVL -171 439 394 426 276 8 22 chrX 139412106 139412240 -23187690 - MIR3 SINE MIR -3 205 74 482 297 11 44 chrX 139413122 139413304 -23186626 - MIR SINE MIR -73 189 14 186 103 0 0 chrX 139413318 139413347 -23186583 + (TGAG)n Simple_repeat Simple_repeat 3 31 0 279 0 0 0 chrX 139413348 139413379 -23186551 + (TG)n Simple_repeat Simple_repeat 1 31 0 381 43 0 0 chrX 139413643 139413690 -23186240 + (CTCA)n Simple_repeat Simple_repeat 3 49 0 22 35 0 0 chrX 139416206 139416235 -23183695 + AT_rich Low_complexity Low_complexity 1 29 0 227 133 44 0 chrX 139419026 139419071 -23180859 + GA-rich Low_complexity Low_complexity 1 47 0 2287 84 0 7 chrX 139420181 139420477 -23179453 - AluSg SINE Alu -16 294 1 360 0 0 0 chrX 139420560 139420600 -23179330 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1467 167 0 0 chrX 139420603 139420830 -23179100 - AluSx SINE Alu -25 287 61 2128 131 0 10 chrX 139420846 139421159 -23178771 - AluSx SINE Alu -2 310 1 495 0 0 0 chrX 139421627 139421682 -23178248 + (TG)n Simple_repeat Simple_repeat 2 56 0 2043 105 0 59 chrX 139421913 139422098 -23177832 - AluSx SINE Alu -6 306 147 2216 107 3 0 chrX 139422098 139422408 -23177522 - AluSq SINE Alu -6 307 17 2043 105 0 59 chrX 139422408 139422546 -23177384 - AluSx SINE Alu -165 147 2 1763 135 8 4 chrX 139422665 139422932 -23176998 + AluJb SINE Alu 1 268 -44 545 14 29 0 chrX 139422937 139423006 -23176924 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 1914 132 26 7 chrX 139423006 139423464 -23176466 + AluY SINE Alu 2 465 0 1397 187 7 30 chrX 139423651 139423951 -23175979 + AluJo SINE Alu 1 293 -19 521 238 48 20 chrX 139424770 139424917 -23175013 + MER5B DNA MER1_type 17 167 -11 1991 102 0 60 chrX 139425114 139425416 -23174514 + AluSq SINE Alu 2 283 -50 225 0 0 0 chrX 139425416 139425441 -23174489 + (CA)n Simple_repeat Simple_repeat 2 26 0 1991 102 0 60 chrX 139425441 139425490 -23174440 + AluSq SINE Alu 283 333 0 2205 102 0 0 chrX 139425531 139425859 -23174071 + AluSq SINE Alu 1 328 0 752 179 64 6 chrX 139427158 139427331 -23172599 - MER53 DNA DNA -4 185 3 2090 96 7 0 chrX 139427577 139427868 -23172062 - AluSx SINE Alu -19 293 1 833 132 4 176 chrX 139428528 139428778 -23171152 - MER58C DNA MER1_type 0 215 9 231 391 0 0 chrX 139432339 139432426 -23167504 + G-rich Low_complexity Low_complexity 2 88 0 331 203 61 31 chrX 139433432 139433595 -23166335 + (TTGTG)n Simple_repeat Simple_repeat 5 172 0 285 256 0 47 chrX 139434711 139434797 -23165133 + C-rich Low_complexity Low_complexity 4 85 0 258 32 0 0 chrX 139435106 139435137 -23164793 + (CCG)n Simple_repeat Simple_repeat 2 32 0 234 91 0 0 chrX 139435230 139435263 -23164667 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 420 37 0 0 chrX 139436612 139436666 -23163264 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 228 86 0 0 chrX 139436967 139437002 -23162928 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 218 261 0 31 chrX 139437497 139437562 -23162368 + G-rich Low_complexity Low_complexity 4 66 0 246 231 29 19 chrX 139439562 139439666 -23160264 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 207 0 0 0 chrX 139441418 139441441 -23158489 + (A)n Simple_repeat Simple_repeat 1 23 0 248 217 133 0 chrX 139447062 139447145 -23152785 + MIR SINE MIR 160 253 -9 593 237 14 0 chrX 139447665 139447804 -23152126 - MARNA DNA Mariner -345 241 101 1739 112 51 4 chrX 139448289 139448565 -23151365 + AluSx SINE Alu 14 302 -10 2270 92 3 0 chrX 139448587 139448893 -23151037 - AluSp SINE Alu -6 307 1 1691 166 6 13 chrX 139450222 139450535 -23149395 - AluJo SINE Alu -1 311 1 2209 67 3 0 chrX 139450784 139451102 -23148828 + AluY SINE Alu 1 319 0 2074 112 0 3 chrX 139451126 139451430 -23148500 - AluSx SINE Alu -9 303 1 2006 104 4 4 chrX 139451624 139451903 -23148027 + AluSx SINE Alu 1 279 -33 643 162 0 84 chrX 139452830 139452878 -23147052 - FLAM_A SINE Alu -172 130 80 2186 85 0 3 chrX 139452878 139453171 -23146759 - AluSx SINE Alu -20 292 1 643 162 0 84 chrX 139453171 139453264 -23146666 - FLAM_A SINE Alu -222 80 1 2503 48 0 0 chrX 139456807 139457116 -23142814 - AluY SINE Alu -2 309 1 241 350 113 39 chrX 139457277 139457633 -23142297 + L2 LINE L2 2458 2849 -465 2367 76 0 0 chrX 139457633 139457934 -23141996 - AluSq SINE Alu -12 301 1 241 350 113 39 chrX 139457934 139457985 -23141945 + L2 LINE L2 2849 2895 -419 2226 85 19 0 chrX 139458012 139458319 -23141611 - AluSp SINE Alu 0 313 1 442 316 88 18 chrX 139458336 139458507 -23141423 + MIR SINE MIR 11 193 -69 1690 157 21 3 chrX 139459752 139460039 -23139891 + AluJb SINE Alu 1 292 -20 586 198 121 19 chrX 139460055 139460212 -23139718 - MER39 LTR ERV1 -233 474 302 442 200 105 9 chrX 139460189 139460294 -23139636 - MER39 LTR ERV1 -584 123 9 * 316 226 69 29 chrX 139460305 139460407 -23139523 - MER5A DNA MER1_type -72 117 12 1943 150 0 6 chrX 139460810 139461124 -23138806 + AluJb SINE Alu 1 312 0 1496 186 39 3 chrX 139463545 139463851 -23136079 + 7SLRNA srpRNA srpRNA 1 317 -3 207 162 0 0 chrX 139463852 139463889 -23136041 + GA-rich Low_complexity Low_complexity 4 40 0 924 245 78 42 chrX 139464015 139464398 -23135532 - L1MC4a LINE L1 -1879 5929 5533 184 303 78 100 chrX 139464888 139465208 -23134722 - L2 LINE L2 -5 3308 2996 1095 211 32 100 chrX 139465208 139465559 -23134371 + MLT1G LTR MaLR 149 540 -33 1931 118 34 7 chrX 139465778 139466074 -23133856 - AluSx SINE Alu -7 305 2 1251 182 102 59 chrX 139466160 139466494 -23133436 + MER39 LTR ERV1 1 535 -172 2099 96 4 0 chrX 139466494 139466811 -23133119 + AluSp SINE Alu 3 320 0 1251 182 102 59 chrX 139466811 139466846 -23133084 + MER39 LTR ERV1 535 567 -140 192 152 0 0 chrX 139466846 139466879 -23133051 + CT-rich Low_complexity Low_complexity 2 34 0 767 244 0 6 chrX 139466887 139467059 -23132871 - FRAM SINE Alu -3 173 3 583 217 13 20 chrX 139467064 139467216 -23132714 + MER39 LTR ERV1 557 707 0 216 111 28 0 chrX 139467301 139467337 -23132593 - L2 LINE L2 -2 3311 3275 576 245 80 84 chrX 139467612 139467849 -23132081 - MIR SINE MIR -14 248 13 438 227 8 17 chrX 139468362 139468481 -23131449 + L1MDb LINE L1 775 892 -5517 180 0 0 0 chrX 139468481 139468501 -23131429 + (CAA)n Simple_repeat Simple_repeat 2 21 0 15860 122 61 68 chrX 139468506 139468649 -23131281 + L1MA2 LINE L1 12 154 -7411 2321 88 0 0 chrX 139468649 139468957 -23130973 - AluY SINE Alu -3 308 1 15860 122 61 68 chrX 139468957 139470882 -23129048 + L1MA2 LINE L1 154 2091 -5474 1131 58 0 45 chrX 139470882 139471037 -23128893 - AluSc SINE Alu -9 300 153 15860 122 61 68 chrX 139471037 139471069 -23128861 + L1MA2 LINE L1 2091 2122 -5443 1966 130 0 0 chrX 139471069 139471380 -23128550 + AluSx SINE Alu 1 311 0 15860 122 61 68 chrX 139471380 139472222 -23127708 + L1MA2 LINE L1 2122 2968 -4597 760 62 35 0 chrX 139472222 139472335 -23127595 + (TTTC)n Simple_repeat Simple_repeat 2 118 0 1901 144 29 0 chrX 139472337 139472614 -23127316 - AluSx SINE Alu -27 285 1 15860 122 61 68 chrX 139472614 139473179 -23126751 + L1MA2 LINE L1 2969 3660 -3905 2219 107 0 23 chrX 139473179 139473488 -23126442 + AluSg SINE Alu 1 302 -8 15860 122 61 68 chrX 139473488 139473578 -23126352 + L1MA2 LINE L1 3660 3749 -3816 9484 143 11 69 chrX 139473557 139474458 -23125472 + L1MA2 LINE L1 4519 5471 -2252 * 916 76 0 25 chrX 139474458 139474576 -23125354 + AluSg/x SINE Alu 171 285 -27 222 37 0 0 chrX 139474580 139474607 -23125323 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9484 143 11 69 chrX 139474607 139474938 -23124992 + L1MA2 LINE L1 5474 5823 -1900 2323 92 7 0 chrX 139474938 139475233 -23124697 + AluSq SINE Alu 1 297 -16 9484 143 11 69 chrX 139475233 139476437 -23123493 + L1MA2 LINE L1 5823 7096 -627 2316 91 0 7 chrX 139476437 139476735 -23123195 + AluSp SINE Alu 1 296 -17 180 0 0 0 chrX 139476738 139476758 -23123172 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9484 143 11 69 chrX 139476758 139477607 -23122323 + L1MA2 LINE L1 7098 7723 0 26 0 0 0 chrX 139477607 139477633 -23122297 + AT_rich Low_complexity Low_complexity 1 26 0 361 278 40 34 chrX 139477729 139477944 -23121986 + L1MDa LINE L1 1012 1250 -5293 * 1304 155 55 17 chrX 139477940 139478145 -23121785 - L1MCa LINE L1 -4087 2339 2143 1492 187 34 71 chrX 139478145 139478190 -23121740 - MLT1A1 LTR MaLR 0 365 320 240 35 0 0 chrX 139478190 139478219 -23121711 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1600 191 4 0 chrX 139478229 139478496 -23121434 - AluJo SINE Alu -44 268 1 1492 187 34 71 chrX 139478496 139478664 -23121266 - MLT1A1 LTR MaLR -54 311 158 2011 122 7 20 chrX 139478664 139478967 -23120963 - AluSx SINE Alu -13 299 1 1492 187 34 71 chrX 139478967 139479120 -23120810 - MLT1A1 LTR MaLR -207 158 1 1304 155 55 17 chrX 139479120 139479431 -23120499 - L1MCa LINE L1 -4283 2143 1762 3268 241 45 33 chrX 139479454 139480290 -23119640 + L1MDa LINE L1 1260 2085 -4455 1837 146 39 70 chrX 139480290 139480675 -23119255 + THE1C LTR MaLR 3 375 0 3268 241 45 33 chrX 139480675 139480744 -23119186 + L1MDa LINE L1 2085 2152 -4388 2301 93 0 16 chrX 139480744 139481055 -23118875 - AluY SINE Alu -5 306 1 3268 241 45 33 chrX 139481055 139481700 -23118230 + L1MDa LINE L1 2152 2832 -3708 1823 185 3 16 chrX 139481700 139482013 -23117917 + AluJb SINE Alu 1 309 -3 3268 241 45 33 chrX 139482013 139482306 -23117624 + L1MDa LINE L1 2832 3120 -3420 * 3390 242 26 40 chrX 139482305 139482732 -23117198 + L1MDa LINE L1 3540 3972 -2568 1796 173 13 31 chrX 139482732 139483050 -23116880 - AluJb SINE Alu 0 312 1 3390 242 26 40 chrX 139483050 139483791 -23116139 + L1MDa LINE L1 3972 4691 -1849 522 195 9 0 chrX 139483861 139483974 -23115956 + Charlie1 DNA MER1_type 2022 2135 -626 1415 174 17 27 chrX 139483975 139484077 -23115853 + L1MC3 LINE L1 7470 7572 -213 2324 85 0 53 chrX 139484077 139484396 -23115534 + AluSx SINE Alu 1 302 -10 1415 174 17 27 chrX 139484396 139484591 -23115339 + L1MC3 LINE L1 7572 7764 -21 23 68 0 0 chrX 139484628 139484672 -23115258 + AT_rich Low_complexity Low_complexity 1 44 0 629 192 13 7 chrX 139485624 139485775 -23114155 - Charlie1 DNA MER1_type 0 2761 2610 38 51 0 0 chrX 139485776 139485835 -23114095 + AT_rich Low_complexity Low_complexity 1 59 0 1973 162 35 7 chrX 139485847 139486273 -23113657 - Charlie1 DNA MER1_type -134 2627 2190 242 183 0 17 chrX 139486296 139486320 -23113610 - L1MC3 LINE L1 -890 6895 6872 2070 125 0 40 chrX 139486320 139486641 -23113289 - AluSq SINE Alu -5 308 1 242 183 0 17 chrX 139486641 139486676 -23113254 - L1MC3 LINE L1 -913 6872 6837 264 194 0 0 chrX 139486682 139486749 -23113181 + L1MC3 LINE L1 6541 6607 -1178 569 113 0 0 chrX 139486752 139486832 -23113098 + AluS SINE Alu 1 80 -233 1136 210 8 84 chrX 139486832 139487019 -23112911 - L1MC3 LINE L1 -1015 6770 6623 2106 107 50 7 chrX 139487019 139487317 -23112613 - AluSx SINE Alu -1 311 1 1136 210 8 84 chrX 139487317 139487496 -23112434 - L1MC3 LINE L1 -1162 6623 6432 827 193 20 0 chrX 139488377 139488527 -23111403 - FAM SINE Alu -20 165 13 1967 137 12 40 chrX 139488720 139489041 -23110889 - AluSx SINE Alu 0 312 1 2475 81 7 0 chrX 139489159 139489467 -23110463 - AluSp SINE Alu -3 310 1 1651 174 33 0 chrX 139489806 139490081 -23109849 + AluJb SINE Alu 1 284 -28 468 0 0 0 chrX 139490081 139490133 -23109797 + (TA)n Simple_repeat Simple_repeat 2 53 0 614 308 79 13 chrX 139491566 139491793 -23108137 - MIR SINE MIR -5 257 16 380 342 47 16 chrX 139491934 139492124 -23107806 + L2 LINE L2 2137 2332 -982 * 526 265 41 145 chrX 139492117 139492434 -23107496 + L2 LINE L2 2989 3272 0 263 208 13 26 chrX 139492748 139492825 -23107105 + (ATG)n Simple_repeat Simple_repeat 3 78 0 290 206 0 16 chrX 139492825 139492888 -23107042 - MIR SINE MIR -123 139 78 405 225 19 16 chrX 139492893 139493024 -23106906 - MER63 DNA MER1_type -1 1059 704 195 42 0 0 chrX 139493402 139493426 -23106504 + (TG)n Simple_repeat Simple_repeat 1 24 0 223 102 0 102 chrX 139493731 139493790 -23106140 + (GAAAA)n Simple_repeat Simple_repeat 3 55 0 534 230 221 29 chrX 139494102 139494306 -23105624 - MIR SINE MIR -8 254 12 225 0 0 0 chrX 139495063 139495088 -23104842 + (TG)n Simple_repeat Simple_repeat 1 25 0 2048 139 0 3 chrX 139495386 139495681 -23104249 - AluJb SINE Alu -18 294 1 999 221 89 45 chrX 139495893 139496273 -23103657 + MER39 LTR ERV1 311 707 0 257 275 22 44 chrX 139496316 139496407 -23103523 - L2 LINE L2 0 3313 3225 1887 169 0 10 chrX 139497096 139497392 -23102538 - AluJb SINE Alu -19 293 1 24 32 0 0 chrX 139497495 139497526 -23102404 + AT_rich Low_complexity Low_complexity 1 31 0 564 252 43 91 chrX 139500079 139500228 -23099702 + MIR SINE MIR 37 173 -89 2169 103 23 0 chrX 139500228 139500529 -23099401 - AluSx SINE Alu -2 310 3 564 252 43 91 chrX 139500529 139500609 -23099321 + MIR SINE MIR 173 255 -7 263 125 0 0 chrX 139500714 139500754 -23099176 - MLT2A1 LTR ERVL 0 453 414 696 98 0 0 chrX 139500754 139500856 -23099074 + (TA)n Simple_repeat Simple_repeat 2 103 0 193 75 50 0 chrX 139500938 139500978 -23098952 + (TA)n Simple_repeat Simple_repeat 2 43 0 2831 66 25 8 chrX 139500985 139501381 -23098549 - MLT2A1 LTR ERVL -41 403 1 1057 192 122 0 chrX 139501863 139502206 -23097724 - L1ME1 LINE L1 -5 6161 5744 192 325 100 0 chrX 139504304 139504384 -23095546 + MIR SINE MIR 125 212 -50 544 283 46 20 chrX 139505348 139505500 -23094430 - MIR3 SINE MIR 0 208 53 22 0 0 0 chrX 139505639 139505661 -23094269 + AT_rich Low_complexity Low_complexity 1 22 0 866 319 92 29 chrX 139506080 139506559 -23093371 + L2 LINE L2 2449 2957 -357 21 0 0 0 chrX 139506709 139506730 -23093200 + AT_rich Low_complexity Low_complexity 1 21 0 2154 122 0 0 chrX 139506737 139507023 -23092907 - AluSx SINE Alu -26 286 1 2510 58 0 3 chrX 139507942 139508251 -23091679 + AluSc SINE Alu 1 308 -1 186 43 0 0 chrX 139508385 139508408 -23091522 + (GA)n Simple_repeat Simple_repeat 2 24 0 227 188 0 0 chrX 139508834 139508882 -23091048 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 1804 125 29 0 chrX 139508924 139509203 -23090727 - MER7A DNA MER2_type 0 346 62 311 322 0 0 chrX 139509220 139509310 -23090620 - L1MC4 LINE L1 -1339 6703 6614 261 0 0 0 chrX 139509337 139509366 -23090564 + (CA)n Simple_repeat Simple_repeat 2 30 0 407 149 0 27 chrX 139509366 139509440 -23090490 - 7SK RNA RNA -121 72 1 189 0 0 0 chrX 139510462 139510483 -23089447 + (TG)n Simple_repeat Simple_repeat 2 22 0 530 289 57 0 chrX 139510932 139511091 -23088839 - MIR SINE MIR 0 262 95 1508 217 15 12 chrX 139511153 139511489 -23088441 - MER58B DNA MER1_type -3 338 2 311 318 24 71 chrX 139511595 139511697 -23088233 - MLT1I LTR MaLR -137 272 184 2142 152 17 8 chrX 139511697 139512059 -23087871 - MLT1A1 LTR MaLR 0 365 1 311 318 24 71 chrX 139512059 139512167 -23087763 - MLT1I LTR MaLR -225 184 72 237 158 0 0 chrX 139512276 139512314 -23087616 - MIR SINE MIR -223 39 2 383 260 76 108 chrX 139512715 139512938 -23086992 - MIR SINE MIR 0 262 47 334 323 40 101 chrX 139513196 139513444 -23086486 + L2 LINE L2 2977 3209 -63 253 323 105 57 chrX 139513478 139513602 -23086328 + L2 LINE L2 3125 3254 -18 372 230 47 16 chrX 139515335 139515462 -23084468 - MIR SINE MIR -62 146 55 261 265 91 30 chrX 139515788 139515920 -23084010 - L2 LINE L2 -1 3312 3173 625 291 38 29 chrX 139515946 139516156 -23083774 - MIR SINE MIR -14 248 37 308 241 71 27 chrX 139516342 139516454 -23083476 + L2 LINE L2 3152 3268 -4 2245 106 3 0 chrX 139516793 139517085 -23082845 - AluSx SINE Alu -19 293 1 591 282 0 14 chrX 139517146 139517288 -23082642 + MIR SINE MIR 15 154 -108 5168 137 4 87 chrX 139517288 139517558 -23082372 + L1MA7 LINE L1 5219 5510 -781 2300 117 0 0 chrX 139517558 139517865 -23082065 + AluSx SINE Alu 1 307 -5 5168 137 4 87 chrX 139517865 139518227 -23081703 + L1MA7 LINE L1 5510 5900 -391 216 0 0 0 chrX 139518227 139518251 -23081679 + (CA)n Simple_repeat Simple_repeat 2 25 0 5168 137 4 87 chrX 139518251 139518787 -23081143 + L1MA7 LINE L1 5900 6291 0 226 240 269 29 chrX 139518795 139518899 -23081031 + MIR SINE MIR 133 261 -1 2368 89 0 0 chrX 139519218 139519510 -23080420 + AluSx SINE Alu 1 292 -20 384 217 22 0 chrX 139519551 139519643 -23080287 + MER94 DNA DNA 41 134 0 608 265 30 18 chrX 139519770 139519936 -23079994 + MIR SINE MIR 18 185 -77 308 200 0 0 chrX 139520124 139520184 -23079746 + L2 LINE L2 3003 3062 -251 * 894 282 76 34 chrX 139520182 139520590 -23079340 - L2 LINE L2 -70 3243 2819 867 307 14 7 chrX 139520591 139520953 -23078977 - L2 LINE L2 -225 3088 2724 475 291 132 19 chrX 139521186 139521399 -23078531 + MIR SINE MIR 26 262 0 279 0 0 0 chrX 139522693 139522710 -23077220 + (TG)n Simple_repeat Simple_repeat 1 48 0 279 0 0 0 chrX 139522710 139522741 -23077189 + (TG)n Simple_repeat Simple_repeat 2 32 0 2290 97 3 10 chrX 139522758 139523056 -23076874 - AluSx SINE Alu -16 296 1 318 106 0 0 chrX 139523059 139523106 -23076824 + (TG)n Simple_repeat Simple_repeat 2 48 0 482 259 32 43 chrX 139523414 139523601 -23076329 - MIR SINE MIR -55 207 24 339 121 0 0 chrX 139523853 139523911 -23076019 + (A)n Simple_repeat Simple_repeat 1 58 0 196 322 92 0 chrX 139523933 139524020 -23075910 + L3b LINE CR1 1368 1462 -121 191 103 26 0 chrX 139524398 139524437 -23075493 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2092 92 7 3 chrX 139524789 139525116 -23074814 - AluSq SINE Alu 0 328 1 620 199 124 60 chrX 139525562 139525763 -23074167 - MER58C DNA MER1_type -1 214 1 312 304 38 13 chrX 139525773 139525901 -23074029 - L1ME2 LINE L1 -214 5950 5822 414 162 0 0 chrX 139525904 139525978 -23073952 + (TA)n Simple_repeat Simple_repeat 1 74 0 2251 93 3 23 chrX 139525978 139526280 -23073650 - AluSq SINE Alu -17 296 1 320 242 8 33 chrX 139526291 139526411 -23073519 - L1M3 LINE L1 -351 5817 5701 286 120 67 0 chrX 139527232 139527307 -23072623 + (TA)n Simple_repeat Simple_repeat 1 80 0 1855 150 11 3 chrX 139527307 139527593 -23072337 - AluJo SINE Alu -24 288 1 913 212 62 4 chrX 139527597 139527823 -23072107 - L1MB5 LINE L1 0 6174 5936 417 245 10 10 chrX 139527889 139527987 -23071943 - MER5A DNA MER1_type -83 106 9 3635 168 15 15 chrX 139528066 139528793 -23071137 + L1MB8 LINE L1 5452 6178 0 2022 145 0 0 chrX 139528990 139529297 -23070633 - AluSx SINE Alu 0 307 1 352 300 109 0 chrX 139529424 139529534 -23070396 + L2 LINE L2 3151 3272 0 326 275 90 81 chrX 139529818 139530040 -23069890 + MLT1H LTR MaLR 111 334 -215 279 198 44 77 chrX 139530131 139530177 -23069753 + MLT1H LTR MaLR 454 497 -52 1807 184 58 54 chrX 139530177 139530640 -23069290 + MLT1C LTR MaLR 1 465 -2 279 198 44 77 chrX 139530640 139530684 -23069246 + MLT1H LTR MaLR 497 541 -8 22 35 0 0 chrX 139531191 139531220 -23068710 + AT_rich Low_complexity Low_complexity 1 29 0 234 110 64 46 chrX 139531347 139531456 -23068474 + (TA)n Simple_repeat Simple_repeat 2 112 0 1995 107 4 0 chrX 139531456 139531726 -23068204 - AluSx SINE Alu -41 271 1 430 161 18 18 chrX 139531738 139531850 -23068080 - L1M4 LINE L1 -1092 5054 4943 319 258 100 17 chrX 139532558 139532678 -23067252 - MER94 DNA DNA 0 134 5 2176 118 0 16 chrX 139532738 139533053 -23066877 - AluSx SINE Alu -2 310 1 1852 206 21 12 chrX 139533214 139533321 -23066609 + L1MB4 LINE L1 4308 4413 -1733 2255 64 0 4 chrX 139533321 139533641 -23066289 + AluY SINE Alu 1 319 0 1852 206 21 12 chrX 139533641 139534015 -23065915 + L1MB4 LINE L1 4413 4796 -1350 3408 152 82 10 chrX 139534015 139534714 -23065216 + L1MB4 LINE L1 5432 6180 0 2310 144 33 5 chrX 139534907 139535330 -23064600 - L1MA4 LINE L1 -3 6999 6565 1279 174 87 0 chrX 139535332 139535435 -23064495 + AluJo SINE Alu 29 122 -190 2192 106 0 29 chrX 139535435 139535747 -23064183 + AluSx SINE Alu 1 303 -9 1279 174 87 0 chrX 139535747 139535861 -23064069 + AluJo SINE Alu 122 265 -47 10575 197 38 59 chrX 139535861 139538438 -23061492 - L1MA4 LINE L1 -453 6549 3919 1788 129 91 3 chrX 139538438 139538725 -23061205 + AluSx SINE Alu 1 312 0 10575 197 38 59 chrX 139538725 139538945 -23060985 - L1MA4 LINE L1 -3083 3919 3696 1320 123 0 5 chrX 139538945 139539132 -23060798 - AluSx SINE Alu -126 186 1 10575 197 38 59 chrX 139539132 139540567 -23059363 - L1MA4 LINE L1 -3306 3696 2232 2282 110 0 0 chrX 139540567 139540859 -23059071 - AluSx SINE Alu -20 292 1 10575 197 38 59 chrX 139540859 139540902 -23059028 - L1MA4 LINE L1 -4770 2232 2190 1887 148 21 7 chrX 139540902 139541185 -23058745 + AluSx SINE Alu 1 287 -25 10575 197 38 59 chrX 139541185 139541232 -23058698 - L1MA4 LINE L1 -4812 2190 2144 2350 108 0 0 chrX 139541232 139541538 -23058392 + AluSq SINE Alu 1 306 -7 10575 197 38 59 chrX 139541538 139542981 -23056949 - L1MA4 LINE L1 -4858 2144 810 1840 166 24 35 chrX 139543244 139543617 -23056313 - MER93b LTR ERV1 0 373 5 201 339 79 8 chrX 139543636 139543763 -23056167 + L2 LINE L2 3172 3307 -6 32 0 0 0 chrX 139545058 139545090 -23054840 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrX 139545128 139545149 -23054781 + AT_rich Low_complexity Low_complexity 1 21 0 1402 208 82 0 chrX 139545149 139545352 -23054578 + MER2 DNA MER2_type 2 242 -103 2114 120 0 3 chrX 139545352 139545644 -23054286 - AluSg SINE Alu -19 291 1 1402 208 82 0 chrX 139545644 139545758 -23054172 + MER2 DNA MER2_type 242 345 0 302 362 14 14 chrX 139545988 139546126 -23053804 + L2 LINE L2 2916 3053 -219 429 311 8 0 chrX 139546317 139546436 -23053494 + L2 LINE L2 3194 3313 0 501 289 67 0 chrX 139546835 139546984 -23052946 + MIR3 SINE MIR 34 192 -16 455 353 68 57 chrX 139547228 139547670 -23052260 + L2 LINE L2 2826 3272 0 1258 219 201 38 chrX 139547728 139547879 -23052051 - MLT2B1 LTR ERVL 0 520 395 1610 195 20 30 chrX 139547879 139548181 -23051749 - AluJo SINE Alu -13 299 1 1258 219 201 38 chrX 139548181 139548476 -23051454 - MLT2B1 LTR ERVL -125 395 1 1693 180 38 12 chrX 139548934 139549279 -23050651 + MLT1A1 LTR MaLR 12 365 0 2236 138 0 0 chrX 139549370 139549681 -23050249 - AluJb SINE Alu -1 311 1 1703 205 3 3 chrX 139549924 139550244 -23049686 + AluJb SINE Alu 1 312 0 282 360 0 8 chrX 139551058 139551183 -23048747 - Charlie8 DNA MER1_type -2136 281 158 4254 102 19 6 chrX 139551216 139551856 -23048074 + L1MA3 LINE L1 5657 6304 -1 401 240 72 51 chrX 139551963 139552073 -23047857 + MIR3 SINE MIR 7 77 -131 4297 80 6 52 chrX 139552073 139552733 -23047197 - L1PA11 LINE L1 0 6174 5545 401 240 72 51 chrX 139552733 139552781 -23047149 + MIR3 SINE MIR 77 122 -86 2117 108 11 0 chrX 139553730 139554040 -23045890 - AluSx SINE Alu 0 313 1 373 268 6 55 chrX 139554082 139554246 -23045684 + L1MC5 LINE L1 7732 7887 -74 2307 85 3 0 chrX 139554345 139554649 -23045281 - AluSp SINE Alu 0 305 1 330 115 0 0 chrX 139555837 139555889 -23044041 + (CA)n Simple_repeat Simple_repeat 2 53 0 3306 144 52 45 chrX 139556283 139556767 -23043163 - L1MB4 LINE L1 -26 6154 5675 2099 152 0 9 chrX 139556767 139557082 -23042848 - AluJb SINE Alu 0 312 1 3306 144 52 45 chrX 139557082 139557269 -23042661 - L1MB4 LINE L1 -505 5675 5475 195 42 0 0 chrX 139557269 139557293 -23042637 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 3306 144 52 45 chrX 139557293 139557336 -23042594 - L1MB4 LINE L1 -705 5475 5434 2053 134 3 3 chrX 139557476 139557781 -23042149 + AluSx SINE Alu 1 305 -7 297 241 169 0 chrX 139557831 139557914 -23042016 - MIR SINE MIR -71 191 95 370 236 31 142 chrX 139558847 139559072 -23040858 - L2 LINE L2 0 3272 3073 466 172 20 201 chrX 139559244 139559312 -23040618 - MIR SINE MIR -5 257 178 2426 92 0 3 chrX 139559312 139559618 -23040312 - AluSq SINE Alu -8 305 1 1655 152 29 23 chrX 139559620 139559831 -23040099 - L1MC1 LINE L1 -9 6324 6109 2435 151 31 24 chrX 139559831 139560022 -23039908 + MSTB LTR MaLR 1 189 -237 2110 122 0 20 chrX 139560022 139560325 -23039605 + AluSx SINE Alu 1 297 -15 2435 151 31 24 chrX 139560325 139560556 -23039374 + MSTB LTR MaLR 189 426 0 1655 152 29 23 chrX 139560556 139560654 -23039276 - L1MC1 LINE L1 -224 6109 6013 466 172 20 201 chrX 139560654 139560786 -23039144 - MIR SINE MIR -85 177 91 6154 147 12 20 chrX 139560943 139560993 -23038937 - L1MA4A LINE L1 -5 6298 6249 183 42 0 0 chrX 139560993 139561017 -23038913 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2322 86 0 0 chrX 139561017 139561308 -23038622 - AluSx SINE Alu -21 291 1 6154 147 12 20 chrX 139561308 139562253 -23037677 - L1MA4A LINE L1 -53 6250 5299 1400 44 0 6 chrX 139562253 139562434 -23037496 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6154 147 12 20 chrX 139562434 139562888 -23037042 - L1MA4A LINE L1 -1004 5299 4859 1807 129 58 18 chrX 139562888 139563025 -23036905 + AluSx SINE Alu 1 131 -203 2279 67 0 7 chrX 139563025 139563358 -23036572 + AluY SINE Alu 1 311 0 1807 129 58 18 chrX 139563358 139563543 -23036387 + AluSx SINE Alu 131 334 0 6154 147 12 20 chrX 139563543 139563778 -23036152 - L1MA4A LINE L1 -1444 4859 4624 423 265 26 34 chrX 139564133 139564250 -23035680 + L2 LINE L2 3183 3298 -15 203 184 0 0 chrX 139564356 139564394 -23035536 + T-rich Low_complexity Low_complexity 3 40 0 380 326 151 19 chrX 139564400 139564725 -23035205 - L2 LINE L2 -1729 1585 1218 226 314 0 0 chrX 139564915 139564985 -23034945 + Charlie4 DNA MER1_type 1892 1961 0 2465 31 0 0 chrX 139565378 139565707 -23034223 + AluY SINE Alu 1 311 0 254 250 125 56 chrX 139565707 139565858 -23034072 - L1ME LINE L1 -549 5572 5408 2358 152 60 19 chrX 139566303 139566769 -23033161 - MER31A LTR ERV1 0 485 1 2168 112 0 3 chrX 139566770 139567065 -23032865 - AluSg SINE Alu -16 294 1 1666 132 114 7 chrX 139567158 139567431 -23032499 - AluSx SINE Alu -10 302 1 656 258 92 0 chrX 139568387 139568550 -23031380 + MIR SINE MIR 60 237 -25 424 240 33 16 chrX 139568659 139568780 -23031150 - MIR3 SINE MIR -1 207 85 333 0 0 0 chrX 139571420 139571457 -23028473 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 128 0 0 chrX 139572434 139572473 -23027457 + (TGGGGG)n Simple_repeat Simple_repeat 4 42 0 263 207 52 112 chrX 139572626 139572742 -23027188 + MIR3 SINE MIR 85 193 -15 387 248 30 30 chrX 139574170 139574271 -23025659 + MIR SINE MIR 22 122 -140 399 280 34 17 chrX 139574499 139574629 -23025301 - MIR SINE MIR -62 146 22 528 30 0 0 chrX 139575888 139575954 -23023976 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 674 158 20 0 chrX 139575973 139576074 -23023856 - AluSg/x SINE Alu -20 292 190 2220 116 0 3 chrX 139576074 139576375 -23023555 - AluSx SINE Alu -12 300 1 2861 133 64 4 chrX 139576440 139576906 -23023024 - L1MB3 LINE L1 -2 6181 5688 276 284 111 31 chrX 139577009 139577171 -23022759 - MIR3 SINE MIR -19 189 15 234 0 0 0 chrX 139577319 139577345 -23022585 + (T)n Simple_repeat Simple_repeat 1 26 0 321 288 59 39 chrX 139578214 139578367 -23021563 - MIR SINE MIR -11 251 96 2173 105 6 29 chrX 139578376 139578690 -23021240 - AluSp SINE Alu -6 307 1 318 376 23 0 chrX 139578823 139578956 -23020974 + MIR SINE MIR 46 181 -81 1157 235 119 55 chrX 139579351 139579828 -23020102 - L2 LINE L2 -1 3312 2805 2291 103 6 6 chrX 139580030 139580342 -23019588 - AluSx SINE Alu 0 312 1 555 269 0 38 chrX 139580495 139580655 -23019275 - MIR3 SINE MIR -2 206 53 638 269 19 0 chrX 139581267 139581427 -23018503 - MIR3 SINE MIR -4 204 42 412 234 0 21 chrX 139583858 139583952 -23015978 + MER63 DNA MER1_type 34 751 -85 294 149 0 0 chrX 139583953 139584000 -23015930 + MER63 DNA MER1_type 977 1023 -37 181 333 21 11 chrX 139584020 139584113 -23015817 - MIR SINE MIR -66 196 103 328 167 0 26 chrX 139584114 139584210 -23015720 - MER5A DNA MER1_type 0 189 44 189 254 0 55 chrX 139584908 139584963 -23014967 - L2 LINE L2 -81 3232 3181 190 277 45 103 chrX 139585504 139585659 -23014271 + L2 LINE L2 2963 3108 -164 183 273 148 74 chrX 139585771 139585837 -23014093 - MIR SINE MIR 0 262 202 2332 97 3 0 chrX 139585837 139586147 -23013783 - AluSp SINE Alu -2 311 1 183 273 148 74 chrX 139586147 139586256 -23013674 - MIR SINE MIR -60 202 74 221 269 0 0 chrX 139586663 139586715 -23013215 + L2 LINE L2 3259 3310 -3 2094 109 30 13 chrX 139586801 139587103 -23012827 - AluSx SINE Alu -5 307 1 314 326 22 0 chrX 139587136 139587225 -23012705 - L2 LINE L2 -39 3233 3143 18543 42 0 0 chrX 139587825 139590721 -23009209 - L1PA5 LINE L1 -5 6149 3253 12229 89 3 0 chrX 139590721 139592349 -23007581 - L1PA5 LINE L1 -4512 1634 2 893 283 55 12 chrX 139592379 139592700 -23007230 - L1MC/D LINE L1 -347 5804 5487 536 178 0 0 chrX 139592704 139592794 -23007136 + MER1B DNA MER1_type 1 90 -247 446 141 0 28 chrX 139592792 139592863 -23007067 - MER1B DNA MER1_type -152 145 77 * 402 245 75 13 chrX 139592925 139593084 -23006846 + L1MC5 LINE L1 7260 7428 -533 22 0 0 0 chrX 139593354 139593376 -23006554 + AT_rich Low_complexity Low_complexity 1 22 0 2142 96 35 0 chrX 139593534 139593816 -23006114 + AluSc SINE Alu 1 292 -17 384 285 31 17 chrX 139594574 139594733 -23005197 + MIR SINE MIR 28 192 -70 357 318 45 0 chrX 139595086 139595218 -23004712 - MIR SINE MIR -5 257 120 2302 110 0 0 chrX 139595475 139595776 -23004154 - AluSq SINE Alu -12 301 1 181 232 167 36 chrX 139595800 139595938 -23003992 + MIR SINE MIR 103 258 -4 877 329 73 38 chrX 139595958 139596107 -23003823 + L3 LINE CR1 576 718 -859 2000 118 11 0 chrX 139596107 139596429 -23003501 - AluSx SINE Alu 0 325 1 877 329 73 38 chrX 139596429 139596785 -23003145 + L3 LINE CR1 718 1100 -477 2257 87 3 0 chrX 139596800 139597112 -23002818 - AluSq SINE Alu 0 313 1 859 167 0 101 chrX 139597137 139597335 -23002595 + AluJb SINE Alu 133 310 -2 838 258 95 69 chrX 139597335 139597549 -23002381 - L1MC5 LINE L1 -61 7900 7693 2382 96 3 3 chrX 139597549 139597861 -23002069 - AluSp SINE Alu 0 313 2 838 258 95 69 chrX 139597861 139598255 -23001675 - L1MC5 LINE L1 -268 7693 7276 272 323 8 16 chrX 139598228 139598355 -23001575 - L1MC4 LINE L1 -566 7476 7351 * 232 287 70 43 chrX 139598359 139598474 -23001456 + L3 LINE CR1 1086 1203 -374 3024 192 32 38 chrX 139598490 139599120 -23000810 - MLT1E2 LTR MaLR 0 626 1 204 309 181 20 chrX 139599172 139599321 -23000609 + L3 LINE CR1 1339 1511 -66 568 172 181 116 chrX 139599350 139599582 -23000348 + MIR SINE MIR 16 262 0 2490 67 3 3 chrX 139599639 139599938 -22999992 + AluSp SINE Alu 1 299 -14 1558 177 57 3 chrX 139600012 139600176 -22999754 - AluJo SINE Alu -15 297 110 351 0 0 0 chrX 139600176 139600215 -22999715 + (TG)n Simple_repeat Simple_repeat 2 40 0 1558 177 57 3 chrX 139600215 139600332 -22999598 - AluJo SINE Alu -202 110 1 223 315 48 34 chrX 139600522 139600648 -22999282 + L2 LINE L2 2911 3034 -238 2287 81 14 3 chrX 139600648 139600943 -22998987 + AluSc SINE Alu 1 298 -11 1647 130 0 0 chrX 139600943 139601173 -22998757 + AluSg/x SINE Alu 80 310 0 223 315 48 34 chrX 139601173 139601191 -22998739 + L2 LINE L2 3033 3058 -214 941 281 68 42 chrX 139601428 139602025 -22997905 + L1P2 LINE L1 5222 5842 -312 2104 108 13 35 chrX 139602250 139602566 -22997364 - AluSq SINE Alu -4 309 1 225 333 0 0 chrX 139602605 139602662 -22997268 + MIR SINE MIR 205 261 -1 297 302 0 10 chrX 139602690 139602786 -22997144 + MIR3 SINE MIR 66 160 -48 316 348 52 0 chrX 139604431 139604586 -22995344 - MIR SINE MIR -22 240 78 2244 91 0 3 chrX 139604998 139605294 -22994636 - AluSq SINE Alu -17 296 2 2099 141 3 0 chrX 139605403 139605715 -22994215 - AluSq SINE Alu 0 313 1 1453 216 3 7 chrX 139605758 139606054 -22993876 + AluJo SINE Alu 1 295 -17 1543 189 4 8 chrX 139606411 139606676 -22993254 + MLT1E1 LTR MaLR 1 264 -390 1645 181 18 0 chrX 139606681 139606963 -22992967 + AluJo SINE Alu 1 287 -25 1442 204 0 53 chrX 139607054 139607373 -22992557 - AluJo SINE Alu -10 302 1 1829 198 30 22 chrX 139607378 139607742 -22992188 + MLT1E1 LTR MaLR 288 654 0 7539 29 14 1 chrX 139608652 139609504 -22990426 + L1PA3 LINE L1 5293 6155 0 360 200 55 152 chrX 139610191 139610336 -22989594 - MIR SINE MIR -54 208 78 202 330 23 11 chrX 139610714 139610802 -22989128 - L2 LINE L2 -34 3279 3191 417 278 31 31 chrX 139611352 139611514 -22988416 - MIR SINE MIR 0 262 101 254 264 0 0 chrX 139611656 139611709 -22988221 + MIR3 SINE MIR 151 203 -5 21 0 0 0 chrX 139612946 139612967 -22986963 + AT_rich Low_complexity Low_complexity 1 21 0 1493 188 46 16 chrX 139613100 139613403 -22986527 - AluJo SINE Alu 0 312 1 584 282 60 13 chrX 139613443 139613592 -22986338 - MER91A DNA MER1_type -17 179 24 216 0 0 0 chrX 139614313 139614337 -22985593 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 430 302 30 24 chrX 139614381 139614550 -22985380 - MIR3 SINE MIR -4 204 35 31625 110 21 62 chrX 139614629 139617964 -22981966 + L1PA7 LINE L1 13 2975 -3179 2085 148 0 0 chrX 139617964 139618274 -22981656 + AluSg SINE Alu 1 310 0 31625 110 21 62 chrX 139618274 139621131 -22978799 + L1PA7 LINE L1 2975 5946 -208 5113 64 6 11 chrX 139621135 139622268 -22977662 - MER11A LTR ERVK 0 1266 2 1642 79 0 14 chrX 139622268 139622482 -22977448 + L1PA7 LINE L1 5944 6154 0 1092 178 112 0 chrX 139622778 139622975 -22976955 - MER20 DNA MER1_type 0 219 1 210 71 0 0 chrX 139623043 139623071 -22976859 + (TG)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chrX 139623184 139623209 -22976721 + AT_rich Low_complexity Low_complexity 1 25 0 226 314 49 20 chrX 139624010 139624112 -22975818 - HAL1 LINE L1 -5 2502 2398 22 35 0 0 chrX 139624115 139624144 -22975786 + AT_rich Low_complexity Low_complexity 1 29 0 461 289 98 17 chrX 139624270 139624606 -22975324 - L1MC4a LINE L1 -105 6016 5669 336 257 101 53 chrX 139624742 139624969 -22974961 - L1MC4a LINE L1 -731 5431 5195 5639 119 35 0 chrX 139625048 139626220 -22973710 - L1PA15 LINE L1 -2 6163 4992 291 309 112 33 chrX 139626244 139626791 -22973139 - L1MC4a LINE L1 -1051 5095 4506 571 284 30 0 chrX 139626934 139627103 -22972827 - HsTC2 DNA Tc2 -1722 176 3 498 315 7 14 chrX 139627116 139627408 -22972522 - L1MC4a LINE L1 -2571 3575 3286 24 91 0 0 chrX 139627550 139627616 -22972314 + AT_rich Low_complexity Low_complexity 1 66 0 6033 165 16 9 chrX 139627616 139629248 -22970682 - L1MA4 LINE L1 -11 7708 6058 2345 67 0 35 chrX 139629248 139629562 -22970368 - AluSp SINE Alu -10 303 1 6033 165 16 9 chrX 139629562 139629925 -22970005 - L1MA4 LINE L1 -1661 6058 5699 2090 130 7 3 chrX 139629929 139630229 -22969701 - AluSq SINE Alu -2 311 11 969 164 23 102 chrX 139630236 139630438 -22969492 - L1MA4 LINE L1 -3752 3813 3643 2066 115 3 43 chrX 139630438 139630760 -22969170 + AluSg SINE Alu 1 309 -1 969 164 23 102 chrX 139630760 139630931 -22968999 - L1MA4 LINE L1 -3922 3643 3460 695 183 8 0 chrX 139630947 139631073 -22968857 - MLT1F1 LTR MaLR -347 220 94 1709 114 0 0 chrX 139631073 139631300 -22968630 + AluSx SINE Alu 1 227 -85 423 0 0 0 chrX 139631330 139631377 -22968553 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 666 164 10 0 chrX 139631377 139631481 -22968449 - MLT1F1 LTR MaLR -462 105 1 2276 97 0 0 chrX 139631554 139631842 -22968088 - AluSq SINE Alu -25 288 1 46 19 0 0 chrX 139631853 139631906 -22968024 + AT_rich Low_complexity Low_complexity 1 53 0 619 249 38 111 chrX 139633050 139633311 -22966619 - MIR SINE MIR -18 244 3 1149 261 98 58 chrX 139634787 139635285 -22964645 - LTR33 LTR ERVL -3 518 1 1679 173 0 13 chrX 139636885 139637197 -22962733 + L1PA16 LINE L1 5859 6166 0 1412 62 6 0 chrX 139637560 139637737 -22962193 + AluY SINE Alu 130 307 -4 2794 225 47 30 chrX 139637737 139638645 -22961285 + L1ME1 LINE L1 5190 6112 -54 1239 255 55 47 chrX 139638642 139638955 -22960975 - L1MEc LINE L1 -5878 518 200 * 2438 87 7 0 chrX 139638955 139639265 -22960665 - AluSx SINE Alu 0 312 1 1239 255 55 47 chrX 139639265 139639355 -22960575 - L1MEc LINE L1 -6196 200 112 4373 137 63 52 chrX 139639374 139640330 -22959600 - L1MB2 LINE L1 -4 6167 5200 470 144 11 11 chrX 139640332 139640422 -22959508 - L1MEc LINE L1 -6271 125 36 1544 255 84 42 chrX 139640422 139640900 -22959030 + L2 LINE L2 1822 2319 -995 2212 165 74 60 chrX 139640912 139641398 -22958532 + MLT1D LTR MaLR 13 505 0 1391 216 24 35 chrX 139641442 139641812 -22958118 + L2 LINE L2 2239 2604 -710 2325 101 0 0 chrX 139641829 139642137 -22957793 - AluSg SINE Alu -2 308 1 304 70 0 0 chrX 139642156 139642199 -22957731 - L1MB7 LINE L1 -19 6165 6123 271 259 0 0 chrX 139642199 139642257 -22957673 + L1P LINE L1 2240 2297 -3849 2167 128 0 36 chrX 139642260 139642620 -22957310 + L1PA16 LINE L1 5817 6163 -3 241 268 39 33 chrX 139642742 139642895 -22957035 - L1MC5 LINE L1 -306 7655 7502 * 382 276 69 33 chrX 139642887 139643162 -22956768 - L1M4c LINE L1 -4026 2933 2649 816 266 29 36 chrX 139643506 139643937 -22955993 - L1M4c LINE L1 -4633 2326 1191 2186 298 16 14 chrX 139643956 139644597 -22955333 - L1M4c LINE L1 -5749 1110 469 264 313 169 16 chrX 139644652 139644901 -22955029 - L1M4c LINE L1 -6480 379 93 1086 90 19 0 chrX 139644910 139645066 -22954864 - L1MA2 LINE L1 0 6304 6146 22 88 0 0 chrX 139645095 139645152 -22954778 + AT_rich Low_complexity Low_complexity 1 57 0 327 261 43 100 chrX 139645414 139645644 -22954286 - L1ME4a LINE L1 -16 6105 5889 2053 141 0 0 chrX 139645657 139645955 -22953975 - AluSx SINE Alu -13 299 2 183 325 62 0 chrX 139646148 139646228 -22953702 - MIR SINE MIR -4 258 174 353 241 214 9 chrX 139646668 139646780 -22953150 - MIR SINE MIR -125 137 3 832 157 0 0 chrX 139646842 139646989 -22952941 + L1MA4 LINE L1 6148 6294 -6 3424 108 0 21 chrX 139647248 139647527 -22952403 - MER1A DNA MER1_type -2173 529 263 2414 77 0 0 chrX 139647527 139647825 -22952105 - AluSc SINE Alu -11 298 1 3424 108 0 21 chrX 139647825 139648028 -22951902 - MER1A DNA MER1_type -2439 263 57 354 80 0 0 chrX 139648540 139648590 -22951340 + (CA)n Simple_repeat Simple_repeat 2 51 0 319 283 11 11 chrX 139648840 139648932 -22950998 - MLT1K LTR MaLR -494 94 3 270 312 110 32 chrX 139649361 139649579 -22950351 + L2 LINE L2 2857 3091 -181 341 215 0 15 chrX 139649607 139649672 -22950258 + L2 LINE L2 3209 3272 0 2120 122 10 6 chrX 139649777 139650088 -22949842 + AluSx SINE Alu 1 312 0 265 299 15 0 chrX 139652056 139652123 -22947807 - L2 LINE L2 -18 3295 3228 950 204 0 16 chrX 139652610 139652801 -22947129 + MER5A DNA MER1_type 1 188 -1 1180 145 21 5 chrX 139653433 139653626 -22946304 + MSTB LTR MaLR 1 196 -230 1812 187 18 9 chrX 139653641 139653978 -22945952 + L1 LINE L1 24 363 -7202 1884 158 10 65 chrX 139653992 139654378 -22945552 + L1 LINE L1 5060 5424 -2141 1182 100 0 0 chrX 139654378 139654558 -22945372 + AluSp SINE Alu 133 312 0 1186 204 23 0 chrX 139654560 139654781 -22945149 + L1 LINE L1 5420 5645 -1920 15019 176 32 13 chrX 139654808 139656329 -22943601 - L1PB1 LINE L1 0 6867 5375 2325 109 0 0 chrX 139656329 139656642 -22943288 - AluSq SINE Alu 0 313 1 15019 176 32 13 chrX 139656642 139659206 -22940724 - L1PB1 LINE L1 -1492 5375 2509 2574 43 3 0 chrX 139659206 139659507 -22940423 + AluY SINE Alu 1 302 -9 15019 176 32 13 chrX 139659507 139661206 -22938724 - L1PB1 LINE L1 -4358 2509 843 6507 114 16 0 chrX 139661201 139662176 -22937754 + L1MA2 LINE L1 5304 6294 -10 * 36 0 0 0 chrX 139662176 139662212 -22937718 + AT_rich Low_complexity Low_complexity 1 36 0 1271 173 20 44 chrX 139662220 139662468 -22937462 + MSTB LTR MaLR 185 426 0 352 343 41 7 chrX 139662599 139662745 -22937185 + MIR SINE MIR 28 178 -84 485 252 8 8 chrX 139663284 139663411 -22936519 + MIR SINE MIR 109 235 -27 357 346 73 13 chrX 139663686 139663920 -22936010 + L2 LINE L2 2807 3054 -218 362 235 47 35 chrX 139664494 139664579 -22935351 + L2 LINE L2 3187 3272 0 285 326 10 10 chrX 139665395 139665493 -22934437 + MIR SINE MIR 47 144 -118 619 264 193 5 chrX 139665510 139665722 -22934208 + MIR SINE MIR 11 262 0 775 222 13 93 chrX 139665800 139666000 -22933930 + MER20 DNA MER1_type 2 184 -35 6458 82 16 2 chrX 139666000 139667744 -22932186 - L1PA11 LINE L1 0 6174 4415 775 222 13 93 chrX 139667744 139667768 -22932162 + MER20 DNA MER1_type 184 208 -11 1588 168 35 11 chrX 139667769 139668054 -22931876 + AluJb SINE Alu 1 292 -20 874 300 61 25 chrX 139669218 139669611 -22930319 - MLT1I LTR MaLR -2 407 1 215 163 20 0 chrX 139671949 139671998 -22927932 + T-rich Low_complexity Low_complexity 1 50 0 693 275 5 76 chrX 139672422 139672679 -22927251 + MIR SINE MIR 9 251 -11 561 184 18 0 chrX 139672685 139672799 -22927131 + L1MD3 LINE L1 7870 7985 -10 396 277 62 0 chrX 139673218 139673348 -22926582 - MER103 DNA DNA -22 144 7 700 224 267 21 chrX 139674946 139675272 -22924658 - MLT1I LTR MaLR -3 406 1 526 269 8 15 chrX 139675381 139675515 -22924415 - L2 LINE L2 -8 3305 3173 663 277 182 5 chrX 139675963 139676183 -22923747 + MIR SINE MIR 1 259 -3 264 271 0 0 chrX 139676959 139677018 -22922912 - L2 LINE L2 -5 3267 3209 1330 186 44 101 chrX 139677515 139677902 -22922028 - MLT1A1 LTR MaLR 0 365 1 1077 271 83 66 chrX 139678065 139678154 -22921776 + L2 LINE L2 2622 2708 -605 2430 155 34 36 chrX 139678154 139678252 -22921678 + L1MB3 LINE L1 5685 5782 -401 232 26 0 51 chrX 139678252 139678291 -22921639 + (TA)n Simple_repeat Simple_repeat 2 38 0 2430 155 34 36 chrX 139678291 139678690 -22921240 + L1MB3 LINE L1 5782 6181 -2 1077 271 83 66 chrX 139678690 139678722 -22921208 + L2 LINE L2 2708 2738 -575 2192 122 0 0 chrX 139678722 139679018 -22920912 + AluSx SINE Alu 1 296 -16 1077 271 83 66 chrX 139679018 139679581 -22920349 + L2 LINE L2 2738 3313 0 532 278 62 19 chrX 139680290 139680490 -22919440 - MIR SINE MIR 0 262 61 332 315 54 0 chrX 139680660 139680752 -22919178 + L2 LINE L2 3160 3256 -16 195 100 0 0 chrX 139683307 139683337 -22916593 + (ATG)n Simple_repeat Simple_repeat 1 30 0 822 267 16 12 chrX 139683355 139683613 -22916317 - MIR SINE MIR -1 261 3 903 159 50 11 chrX 139683897 139684079 -22915851 - MER5A DNA MER1_type 0 189 1 350 241 38 83 chrX 139684146 139684279 -22915651 + MIR3 SINE MIR 50 176 -32 516 274 34 0 chrX 139684473 139684590 -22915340 - L2 LINE L2 -1 3271 3151 226 284 0 0 chrX 139684625 139684692 -22915238 - Charlie7 DNA MER1_type -2511 101 35 250 246 66 132 chrX 139685204 139685371 -22914559 + MIR3 SINE MIR 40 195 -13 21 71 0 0 chrX 139685425 139685467 -22914463 + AT_rich Low_complexity Low_complexity 1 42 0 456 280 32 8 chrX 139686285 139686410 -22913520 + L2 LINE L2 3185 3312 -1 1880 207 65 14 chrX 139686588 139687080 -22912850 - L1ME3A LINE L1 -5 6165 5649 352 282 122 83 chrX 139688435 139688821 -22911109 - L2 LINE L2 0 3272 2872 2225 107 0 32 chrX 139688984 139689293 -22910637 + AluSx SINE Alu 1 299 -13 2222 129 0 0 chrX 139689432 139689735 -22910195 + AluSx SINE Alu 1 303 -9 185 302 48 0 chrX 139689946 139690009 -22909921 - MIR SINE MIR -43 219 154 342 115 0 0 chrX 139690077 139690129 -22909801 + (TG)n Simple_repeat Simple_repeat 2 53 0 430 296 112 22 chrX 139690405 139690584 -22909346 - MIR SINE MIR -19 243 49 359 153 40 16 chrX 139690754 139690878 -22909052 + GA-rich Low_complexity Low_complexity 1 127 0 208 288 122 81 chrX 139691090 139691203 -22908727 + MIR SINE MIR 43 157 -62 395 245 29 10 chrX 139692406 139692508 -22907422 + MIR SINE MIR 65 168 -94 346 351 7 0 chrX 139692680 139692828 -22907102 + (TG)n Simple_repeat Simple_repeat 2 150 0 2335 103 0 3 chrX 139692970 139693271 -22906659 - AluSx SINE Alu -12 300 1 21 36 0 0 chrX 139693323 139693351 -22906579 + AT_rich Low_complexity Low_complexity 1 28 0 449 206 22 11 chrX 139694972 139695064 -22904866 + MIR SINE MIR 49 141 -121 701 266 19 75 chrX 139695097 139695364 -22904566 - MIR SINE MIR 0 262 11 259 278 42 28 chrX 139695945 139696017 -22903913 + MIR SINE MIR 35 107 -155 2340 254 61 10 chrX 139696020 139696706 -22903224 - HsTC2c DNA Tc2 -8 721 1 287 274 32 48 chrX 139696726 139696850 -22903080 + MIR SINE MIR 123 244 -18 3688 143 5 5 chrX 139697223 139697844 -22902086 + L1MB2 LINE L1 5549 6169 -2 962 284 46 11 chrX 139698074 139698642 -22901288 + L1ME3A LINE L1 2788 3375 -2771 1536 286 48 5 chrX 139698671 139699454 -22900476 + L1ME3A LINE L1 3543 4359 -1787 403 263 26 9 chrX 139699447 139699600 -22900330 + L1ME3A LINE L1 5362 5526 -644 * 1254 151 88 8 chrX 139699880 139700118 -22899812 - MSTA LTR MaLR -171 257 1 302 309 103 16 chrX 139700132 139700258 -22899672 + L1ME3A LINE L1 5831 5967 -203 264 167 0 0 chrX 139701172 139701220 -22898710 + (CA)n Simple_repeat Simple_repeat 1 48 0 2079 128 44 33 chrX 139703323 139703683 -22896247 + THE1B LTR MaLR 1 364 0 612 231 8 0 chrX 139703715 139703836 -22896094 - FLAM_A SINE Alu -10 123 2 245 216 36 16 chrX 139704371 139704451 -22895479 - MIR SINE MIR -62 146 89 2071 117 3 0 chrX 139704552 139704865 -22895065 + AluSx SINE Alu 1 314 0 388 333 48 12 chrX 139705084 139705249 -22894681 + MIR3 SINE MIR 34 204 -4 451 340 100 18 chrX 139705276 139705555 -22894375 + L2 LINE L2 2474 2775 -539 238 258 32 0 chrX 139705666 139705728 -22894202 + L2 LINE L2 3240 3303 -10 344 276 88 115 chrX 139705825 139706017 -22893913 + L2 LINE L2 3065 3251 -21 183 100 0 0 chrX 139706018 139706048 -22893882 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 5882 81 70 1 chrX 139706127 139707458 -22892472 + L1PA6 LINE L1 4764 6151 -3 4834 109 7 8 chrX 139707458 139708183 -22891747 + L1PA14 LINE L1 5436 6161 0 327 227 80 0 chrX 139711403 139711491 -22888439 + MIR SINE MIR 120 214 -48 276 163 58 70 chrX 139712262 139712348 -22887582 - LTR67 LTR ERVL -5 552 468 1824 177 43 0 chrX 139712630 139712750 -22887180 + AluJb SINE Alu 1 114 -198 189 0 0 0 chrX 139712750 139712771 -22887159 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1824 177 43 0 chrX 139712771 139712949 -22886981 + AluJb SINE Alu 114 312 0 210 194 0 0 chrX 139713063 139713099 -22886831 + MIR SINE MIR 157 192 -70 945 277 165 19 chrX 139713143 139713616 -22886314 - MER34 LTR ERV1 0 542 1 195 100 0 0 chrX 139713829 139713859 -22886071 - MIR SINE MIR -70 192 163 2546 108 78 8 chrX 139713974 139714374 -22885556 - MSTA LTR MaLR 0 428 1 353 298 16 33 chrX 139714374 139714495 -22885435 - MIR3 SINE MIR -80 128 10 672 280 37 12 chrX 139714602 139714827 -22885103 + MIR SINE MIR 32 262 0 281 364 115 52 chrX 139714964 139715233 -22884697 + L2 LINE L2 2977 3262 -10 5989 131 16 18 chrX 139715281 139716335 -22883595 + L1MC1 LINE L1 5282 6333 0 190 284 189 0 chrX 139716710 139716784 -22883146 + MIR3 SINE MIR 112 199 -9 1102 209 127 55 chrX 139716791 139716848 -22883082 - MLT1J1 LTR MaLR 0 446 395 2098 119 132 26 chrX 139716848 139716889 -22883041 - MSTA LTR MaLR 0 428 393 1680 120 117 11 chrX 139716889 139717155 -22882775 + AluSg SINE Alu 1 294 -16 2098 119 132 26 chrX 139717155 139717500 -22882430 - MSTA LTR MaLR -35 393 1 1102 209 127 55 chrX 139717500 139717858 -22882072 - MLT1J1 LTR MaLR -51 395 1 550 289 111 34 chrX 139717874 139718109 -22881821 - MIR SINE MIR -1 261 9 416 229 48 0 chrX 139719276 139719359 -22880571 - L2 LINE L2 -43 3229 3143 1955 162 52 31 chrX 139719442 139719984 -22879946 + MLT2A2 LTR ERVL 1 554 0 207 311 16 0 chrX 139720143 139720204 -22879726 - L2 LINE L2 -1 3312 3251 358 303 122 21 chrX 139720704 139720892 -22879038 - L1ME4a LINE L1 -224 5897 5691 852 261 84 4 chrX 139720903 139721141 -22878789 + MIR SINE MIR 6 262 0 423 320 0 0 chrX 139721157 139721307 -22878623 - L1ME4a LINE L1 -454 5667 5518 203 330 99 11 chrX 139721367 139721458 -22878472 + L2 LINE L2 3173 3271 -1 5350 145 30 4 chrX 139721560 139722786 -22877144 - L1PA16 LINE L1 -7 6159 4897 318 289 105 20 chrX 139722796 139722867 -22877063 - L1ME4a LINE L1 -2380 5428 5364 180 0 0 0 chrX 139722867 139722887 -22877043 + (TG)n Simple_repeat Simple_repeat 1 20 0 318 289 105 20 chrX 139722887 139722967 -22876963 - L1ME4a LINE L1 -2444 5364 5264 227 167 45 15 chrX 139723147 139723213 -22876717 - L1P LINE L1 -1098 5048 4981 2392 75 0 0 chrX 139723454 139723746 -22876184 - AluSg1 SINE Alu -17 292 1 331 267 170 22 chrX 139723970 139724105 -22875825 - MIR3 SINE MIR -25 183 29 334 264 115 0 chrX 139725243 139725330 -22874600 + MIR SINE MIR 36 132 -76 628 302 68 10 chrX 139726085 139726503 -22873427 - Tigger8 DNA MER2_type -11 655 188 25 31 0 0 chrX 139726649 139726681 -22873249 + AT_rich Low_complexity Low_complexity 1 32 0 632 256 133 28 chrX 139726700 139726839 -22873091 - HAL1 LINE L1 -39 2468 2345 324 0 0 0 chrX 139726839 139726875 -22873055 + (CA)n Simple_repeat Simple_repeat 2 37 0 632 256 133 28 chrX 139726875 139727133 -22872797 - HAL1 LINE L1 -162 2345 2029 2421 64 0 3 chrX 139727140 139727438 -22872492 - AluY SINE Alu -13 298 2 321 328 32 24 chrX 139727541 139727666 -22872264 + L2 LINE L2 3187 3312 -1 1070 260 130 19 chrX 139727671 139728048 -22871882 - HAL1 LINE L1 -574 1933 1515 4558 179 21 15 chrX 139728079 139728102 -22871828 + L1MB8 LINE L1 4816 4837 -1341 1962 145 108 17 chrX 139728102 139728446 -22871484 + THE1C LTR MaLR 1 375 0 11007 112 32 15 chrX 139728446 139728899 -22871031 + THE1C-int LTR MaLR 1 445 -1135 2486 74 3 6 chrX 139728899 139729211 -22870719 + AluY SINE Alu 1 311 0 11007 112 32 15 chrX 139729211 139730311 -22869619 + THE1C-int LTR MaLR 445 1580 0 2498 131 19 13 chrX 139730311 139730684 -22869246 + THE1C LTR MaLR 1 375 0 4558 179 21 15 chrX 139730684 139732019 -22867911 + L1MB8 LINE L1 4836 6178 0 337 289 186 6 chrX 139732235 139732391 -22867539 - L2 LINE L2 -311 3002 2819 1276 231 138 29 chrX 139732477 139732928 -22867002 + MLT1H LTR MaLR 50 549 0 699 277 117 9 chrX 139733208 139733439 -22866491 - MIR SINE MIR -6 256 1 268 381 24 16 chrX 139734252 139734378 -22865552 - L2 LINE L2 -9 3263 3137 393 275 50 73 chrX 139734534 139734752 -22865178 + MLT1J1 LTR MaLR 216 428 -18 230 349 68 0 chrX 139734785 139734917 -22865013 + L2 LINE L2 2522 2662 -652 323 258 42 27 chrX 139735282 139735400 -22864530 + MIR SINE MIR 34 149 -63 209 299 112 0 chrX 139735426 139735533 -22864397 + MIR SINE MIR 134 252 -10 6706 40 13 17 chrX 139736340 139737123 -22862807 - LTR17 LTR ERV1 0 780 1 955 268 5 22 chrX 139737190 139737414 -22862516 - MER58A DNA MER1_type -4 220 1 441 66 0 0 chrX 139737933 139737994 -22861936 + (TG)n Simple_repeat Simple_repeat 2 62 0 206 329 96 83 chrX 139739891 139740265 -22859665 + L2 LINE L2 2877 3255 -17 3636 141 72 13 chrX 139740305 139740913 -22859017 + LTR48B LTR ERV1 1 644 0 189 0 0 0 chrX 139740927 139740948 -22858982 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 247 246 118 27 chrX 139741060 139741170 -22858760 - MIR SINE MIR -70 192 73 197 329 49 24 chrX 139741409 139741491 -22858439 - L2 LINE L2 -48 3224 3141 754 252 61 17 chrX 139742294 139742524 -22857406 + MIR SINE MIR 20 259 -3 330 311 134 8 chrX 139742561 139742680 -22857250 + L2 LINE L2 3139 3272 0 182 321 0 0 chrX 139742700 139742756 -22857174 + L2 LINE L2 3250 3305 -8 180 231 19 19 chrX 139743356 139743408 -22856522 - L2 LINE L2 -5 3267 3216 196 169 17 17 chrX 139744380 139744439 -22855491 + GA-rich Low_complexity Low_complexity 2 60 0 466 317 38 53 chrX 139744503 139744765 -22855165 - L2 LINE L2 -36 3277 3020 378 242 148 40 chrX 139744893 139745042 -22854888 - MIR3 SINE MIR -31 177 13 246 253 29 43 chrX 139745111 139745218 -22854712 - MER5B DNA MER1_type 0 178 86 323 341 116 41 chrX 139745579 139745993 -22853937 - L2 LINE L2 -568 2746 2302 509 255 52 108 chrX 139746059 139746365 -22853565 - L2 LINE L2 -1 3312 3024 22 35 0 0 chrX 139746676 139746705 -22853225 + AT_rich Low_complexity Low_complexity 1 29 0 232 355 94 45 chrX 139747091 139747911 -22852019 - L2 LINE L2 -2034 1280 421 464 304 152 6 chrX 139747937 139748095 -22851835 + MER5A DNA MER1_type 9 189 0 186 43 0 0 chrX 139749989 139750012 -22849918 + (TC)n Simple_repeat Simple_repeat 2 24 0 239 157 0 78 chrX 139750144 139750195 -22849735 + HY5 scRNA scRNA 30 76 -8 2356 105 0 0 chrX 139750204 139750510 -22849420 + AluSg SINE Alu 1 306 -4 211 235 188 24 chrX 139753055 139753140 -22846790 - L2 LINE L2 -1 3271 3173 282 106 0 0 chrX 139753854 139753901 -22846029 + (CA)n Simple_repeat Simple_repeat 1 47 0 1423 266 69 103 chrX 139754028 139754605 -22845325 + L2 LINE L2 2469 2994 -319 2403 52 0 11 chrX 139754605 139754891 -22845039 + AluY SINE Alu 29 311 0 1423 266 69 103 chrX 139754891 139755201 -22844729 + L2 LINE L2 2994 3313 0 1088 167 6 0 chrX 139755375 139755555 -22844375 + MSTB LTR MaLR 1 181 -245 2033 128 14 0 chrX 139755556 139755880 -22844050 - AluSq SINE Alu 0 328 1 3435 94 22 2 chrX 139755898 139756356 -22843574 - L1PB1 LINE L1 -1 6150 5684 711 109 0 0 chrX 139756356 139756448 -22843482 + AluS SINE Alu 3 94 -218 1945 104 4 0 chrX 139756458 139756709 -22843221 + AluSx SINE Alu 49 300 -12 1389 100 0 0 chrX 139756713 139756903 -22843027 - L1PB1 LINE L1 -456 5695 5506 1821 131 159 25 chrX 139756907 139757228 -22842702 + THE1B LTR MaLR 1 364 0 6467 87 6 0 chrX 139757228 139758065 -22841865 + THE1B-int LTR MaLR 1 842 -738 2156 116 108 24 chrX 139758066 139758401 -22841529 + THE1B LTR MaLR 2 364 0 5004 175 11 38 chrX 139758407 139759723 -22840207 + L1P5 LINE L1 4217 5485 -666 1543 143 32 16 chrX 139759723 139759975 -22839955 + MSTB LTR MaLR 171 426 0 3086 158 17 49 chrX 139759982 139760149 -22839781 + MSTB-int LTR MaLR 15 186 -1465 2177 115 10 7 chrX 139760149 139760454 -22839476 + AluSx SINE Alu 1 306 -6 3086 158 17 49 chrX 139760454 139760883 -22839047 + MSTB-int LTR MaLR 186 592 -1059 588 167 0 0 chrX 139760879 139760975 -22838955 - MST-int LTR MaLR -962 689 594 * 1278 136 0 0 chrX 139760979 139761156 -22838774 + MSTB LTR MaLR 250 426 0 781 355 29 26 chrX 139761486 139761906 -22838024 + LTR16A LTR ERVL 16 436 -14 1642 312 29 18 chrX 139761921 139762575 -22837355 + HERV16 LTR ERVL 4 664 -4332 807 191 40 0 chrX 139762634 139762786 -22837144 + FRAM SINE Alu 1 158 -18 2212 303 40 20 chrX 139762803 139763676 -22836254 + HERV16 LTR ERVL 716 1569 -3427 231 61 0 0 chrX 139763676 139763709 -22836221 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2212 303 40 20 chrX 139763709 139764489 -22835441 + HERV16 LTR ERVL 1569 2518 -2478 2781 77 0 6 chrX 139764489 139764854 -22835076 + THE1-int LTR MaLR 124 486 -1094 1351 195 0 15 chrX 139765643 139765904 -22834026 + AluJo SINE Alu 21 277 -35 1794 148 21 10 chrX 139766114 139766405 -22833525 + THE1C LTR MaLR 82 375 0 21 0 0 0 chrX 139766833 139766854 -22833076 + AT_rich Low_complexity Low_complexity 1 21 0 831 192 0 0 chrX 139767228 139767374 -22832556 + FRAM SINE Alu 1 146 -30 291 28 0 0 chrX 139767379 139767415 -22832515 + (CA)n Simple_repeat Simple_repeat 2 37 0 9205 205 13 10 chrX 139767687 139767862 -22832068 + L1PB4 LINE L1 3371 3544 -2612 2011 114 10 7 chrX 139767862 139768152 -22831778 - AluSx SINE Alu -21 291 1 9205 205 13 10 chrX 139768152 139770098 -22829832 + L1PB4 LINE L1 3544 5491 -665 35569 67 6 5 chrX 139770098 139776242 -22823688 + L1PA5 LINE L1 1 6147 -7 3643 140 45 9 chrX 139776309 139776958 -22822972 + L1PB4 LINE L1 5473 6144 -12 547 157 17 122 chrX 139777185 139777357 -22822573 - L1MA9 LINE L1 -39 6273 6120 597 204 8 15 chrX 139777522 139777654 -22822276 - L1MB7 LINE L1 -80 6104 5974 187 345 71 12 chrX 139777683 139777767 -22822163 + L2 LINE L2 2970 3058 -214 2138 121 0 10 chrX 139777862 139778167 -22821763 - AluSx SINE Alu -10 302 1 337 326 108 31 chrX 139778181 139778310 -22821620 + L2 LINE L2 3134 3272 0 498 249 92 29 chrX 139779397 139779570 -22820360 - MIR3 SINE MIR -7 201 18 220 239 0 0 chrX 139780243 139780289 -22819641 - L2 LINE L2 -12 3260 3215 435 276 35 0 chrX 139780565 139780681 -22819249 + MIR SINE MIR 21 140 -68 205 240 40 0 chrX 139780886 139780936 -22818994 + L3 LINE CR1 1523 1574 -3 2308 113 7 0 chrX 139780938 139781248 -22818682 - AluSx SINE Alu 0 312 1 2265 96 7 0 chrX 139782161 139782452 -22817478 - AluSg SINE Alu -16 294 2 22 0 0 0 chrX 139782471 139782493 -22817437 + AT_rich Low_complexity Low_complexity 1 22 0 351 180 60 40 chrX 139782744 139782844 -22817086 - L1MA10 LINE L1 -53 6281 6180 2508 146 36 2 chrX 139782857 139783528 -22816402 - L1MA10 LINE L1 -541 5750 5058 1590 176 62 102 chrX 139783686 139783835 -22816095 + L1MB7 LINE L1 5621 5775 -409 297 0 0 0 chrX 139783835 139783868 -22816062 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1590 176 62 102 chrX 139783868 139784285 -22815645 + L1MB7 LINE L1 5775 6164 -20 373 141 0 0 chrX 139784309 139784380 -22815550 - L1M2 LINE L1 -649 5663 5593 * 38397 71 7 2 chrX 139784374 139790493 -22809437 - L1PA5 LINE L1 -1 6153 4 298 247 0 0 chrX 139790497 139790578 -22809352 - L1ME LINE L1 -3057 3587 3507 524 324 86 23 chrX 139790630 139791025 -22808905 - L1M4 LINE L1 -6122 420 1 207 0 0 0 chrX 139791042 139791065 -22808865 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1345 285 40 30 chrX 139791280 139791986 -22807944 - L1ME LINE L1 -5072 1562 850 655 184 42 111 chrX 139791986 139792203 -22807727 + MER58C DNA MER1_type 1 202 -13 604 280 32 39 chrX 139792217 139792496 -22807434 - L1ME LINE L1 -5778 856 580 233 292 174 21 chrX 139792535 139792679 -22807251 - L2 LINE L2 -16 3256 3091 3424 250 56 13 chrX 139792727 139794050 -22805880 + L1M4 LINE L1 551 1945 -4701 3048 80 12 0 chrX 139794219 139794634 -22805296 + THE1-int LTR MaLR 982 1401 -179 203 280 60 20 chrX 139794843 139794943 -22804987 + MIR SINE MIR 41 144 -64 322 355 66 26 chrX 139795171 139795323 -22804607 - MIR SINE MIR -98 164 7 731 288 128 0 chrX 139795591 139795810 -22804120 - MIR SINE MIR -6 256 10 1818 164 0 11 chrX 139796015 139796301 -22803629 + AluJo SINE Alu 11 293 -19 360 327 150 26 chrX 139796324 139796477 -22803453 + MER5A DNA MER1_type 12 183 -6 391 346 89 14 chrX 139797790 139798004 -22801926 - MIR SINE MIR -13 249 20 738 180 0 47 chrX 139798227 139798377 -22801553 - MIR SINE MIR -27 235 93 342 280 197 16 chrX 139798654 139798847 -22801083 - MIR SINE MIR -22 240 13 524 277 8 0 chrX 139798884 139799014 -22800916 - MIR SINE MIR -12 250 120 865 262 93 0 chrX 139799697 139799922 -22800008 + MIR SINE MIR 17 262 0 6266 139 13 11 chrX 139800455 139801362 -22798568 - L1MA2 LINE L1 0 6304 5390 8444 174 11 1 chrX 139801362 139803701 -22796229 - L1PA13 LINE L1 -8 6155 3771 6266 139 13 11 chrX 139803701 139804496 -22795434 - L1MA2 LINE L1 -914 5390 4598 6848 140 19 14 chrX 139804539 139806851 -22793079 - L1MA2 LINE L1 0 6304 3978 901 103 7 0 chrX 139806855 139806991 -22792939 + L1M1 LINE L1 5524 5660 -644 * 1624 149 3 32 chrX 139806975 139807290 -22792640 - L1MA2 LINE L1 -2171 3975 3670 1358 249 14 11 chrX 139807400 139807757 -22792173 + LTR16C LTR ERVL 134 491 0 565 301 151 5 chrX 139809370 139809556 -22790374 - L3 LINE CR1 -3 1574 1362 350 350 130 24 chrX 139809639 139810053 -22789877 + L3 LINE CR1 336 793 -784 214 368 0 0 chrX 139811098 139811166 -22788764 + MIR SINE MIR 195 262 0 248 150 0 0 chrX 139811325 139811365 -22788565 - MSTA LTR MaLR -3 423 384 36836 82 6 7 chrX 139811372 139817529 -22782401 + L1PA6 LINE L1 11 6164 0 2301 119 39 5 chrX 139817529 139817915 -22782015 - MSTA LTR MaLR -29 399 1 2961 130 2 36 chrX 139818698 139819041 -22780889 - L1PA16 LINE L1 -9 6157 5835 2242 112 7 0 chrX 139819041 139819337 -22780593 - AluSg SINE Alu -12 298 1 2961 130 2 36 chrX 139819337 139819493 -22780437 - L1PA16 LINE L1 -331 5835 5675 336 161 62 25 chrX 139819514 139819541 -22780389 - L1PA16 LINE L1 -488 5678 5653 802 29 0 20 chrX 139819541 139819643 -22780287 - L1PA3 LINE L1 -3 6152 6053 336 161 62 25 chrX 139819643 139819696 -22780234 - L1PA16 LINE L1 -513 5653 5595 510 232 9 0 chrX 139819745 139819857 -22780073 - MER81 DNA DNA 0 114 2 189 0 0 0 chrX 139819929 139819950 -22779980 + (T)n Simple_repeat Simple_repeat 1 21 0 28437 83 7 6 chrX 139822669 139828798 -22771132 + L1PA6 LINE L1 11 6143 -11 269 246 0 0 chrX 139829688 139829749 -22770181 + L2 LINE L2 3252 3312 -1 207 338 0 14 chrX 139830166 139830237 -22769693 - L2 LINE L2 0 3313 3244 272 336 9 45 chrX 139830243 139830353 -22769577 + L2 LINE L2 3208 3313 0 209 262 16 98 chrX 139830393 139830515 -22769415 - L2 LINE L2 -144 3128 3017 222 156 0 0 chrX 139830532 139830577 -22769353 + (CA)n Simple_repeat Simple_repeat 2 46 0 558 289 62 39 chrX 139830929 139831137 -22768793 + L2 LINE L2 3101 3313 0 688 117 0 0 chrX 139831379 139831473 -22768457 - FRAM SINE Alu -10 166 73 1151 254 118 54 chrX 139831755 139832307 -22767623 + MLT1G1 LTR MaLR 1 587 -8 1043 226 52 21 chrX 139832389 139832861 -22767069 + MLT1E LTR MaLR 16 593 0 1254 271 115 20 chrX 139835523 139836018 -22763912 + MER34 LTR ERV1 1 542 0 438 324 131 18 chrX 139836058 139836280 -22763650 - MIR SINE MIR -8 254 8 2411 86 10 0 chrX 139838946 139839250 -22760680 + AluSp SINE Alu 1 307 -6 409 288 52 52 chrX 139839899 139840052 -22759878 - MIR3 SINE MIR -18 190 38 622 224 28 88 chrX 139840836 139840943 -22758987 - MIR SINE MIR -7 255 143 2163 89 34 3 chrX 139840943 139841234 -22758696 - AluY SINE Alu -11 300 1 622 224 28 88 chrX 139841234 139841297 -22758633 - MIR SINE MIR -119 143 102 1494 197 27 90 chrX 139841297 139841709 -22758221 - MLT1B LTR MaLR -4 386 1 622 224 28 88 chrX 139841709 139841787 -22758143 - MIR SINE MIR -160 102 21 1069 157 31 195 chrX 139842096 139842543 -22757387 - MLT1A2 LTR MaLR 0 374 1 1662 163 53 34 chrX 139842748 139843103 -22756827 + MLT1A1 LTR MaLR 4 365 0 287 266 28 64 chrX 139843522 139843631 -22756299 + L2 LINE L2 3201 3305 -8 988 101 0 0 chrX 139843864 139844002 -22755928 + AluSg/x SINE Alu 169 306 -6 395 269 11 0 chrX 139844573 139844666 -22755264 + MER91A DNA MER1_type 1 94 -102 221 381 191 0 chrX 139844891 139844975 -22754955 - L2 LINE L2 -36 3236 3137 180 239 0 133 chrX 139845122 139845235 -22754695 - L2 LINE L2 -226 3046 2949 798 177 64 0 chrX 139845302 139845443 -22754487 + FRAM SINE Alu 5 154 -12 26 88 0 0 chrX 139845446 139845514 -22754416 + AT_rich Low_complexity Low_complexity 1 68 0 936 177 23 6 chrX 139845520 139845695 -22754235 - MER2 DNA MER2_type -164 181 4 202 355 122 6 chrX 139845827 139845999 -22753931 - L2 LINE L2 -545 2769 2578 1278 187 0 0 chrX 139845999 139846218 -22753712 + MER58A DNA MER1_type 1 219 -5 424 254 112 42 chrX 139846344 139846604 -22753326 - L1MC5 LINE L1 -122 7839 7562 2194 108 3 16 chrX 139846632 139846946 -22752984 + AluSg SINE Alu 1 310 0 444 300 109 13 chrX 139846966 139847196 -22752734 - MIR SINE MIR -10 252 1 248 221 200 48 chrX 139847223 139847368 -22752562 - L2 LINE L2 -821 2493 2327 382 323 55 0 chrX 139847384 139847548 -22752382 - L2 LINE L2 -605 2709 2537 295 335 161 29 chrX 139847588 139847898 -22752032 - L2 LINE L2 -410 2904 2554 1573 250 62 48 chrX 139847970 139848537 -22751393 + MLT1G LTR MaLR 16 590 0 354 190 44 127 chrX 139848706 139848864 -22751066 - MIR SINE MIR -24 238 94 207 246 29 43 chrX 139852197 139852266 -22747664 - L2 LINE L2 -4 3268 3201 790 296 40 4 chrX 139852774 139853000 -22746930 + MIR SINE MIR 28 261 -1 375 315 84 14 chrX 139853049 139853192 -22746738 + MIR3 SINE MIR 47 199 -9 333 68 0 0 chrX 139854400 139854444 -22745486 + (CA)n Simple_repeat Simple_repeat 2 45 0 270 337 90 60 chrX 139854452 139854719 -22745211 + L2 LINE L2 2998 3272 0 510 267 27 75 chrX 139855614 139855655 -22744275 + MER5B DNA MER1_type 1 42 -136 328 82 0 0 chrX 139855655 139855704 -22744226 + L1PA5 LINE L1 6103 6151 -3 510 267 27 75 chrX 139855704 139855849 -22744081 + MER5B DNA MER1_type 42 178 0 382 298 42 47 chrX 139855853 139856044 -22743886 - L2 LINE L2 -421 2893 2704 282 238 32 0 chrX 139856197 139856260 -22743670 + MIR3 SINE MIR 114 178 -30 2686 29 0 3 chrX 139858492 139858798 -22741132 - AluY SINE Alu -5 306 2 715 251 46 42 chrX 139859387 139859567 -22740363 + MIR SINE MIR 3 186 -76 219 36 0 0 chrX 139859567 139859595 -22740335 + (TA)n Simple_repeat Simple_repeat 2 29 0 715 251 46 42 chrX 139859595 139859673 -22740257 + MIR SINE MIR 186 262 0 454 293 40 13 chrX 139859667 139859817 -22740113 - L2 LINE L2 -5 3308 3155 * 648 184 22 29 chrX 139861052 139861188 -22738742 + MIR SINE MIR 11 145 -117 825 251 62 88 chrX 139861227 139861523 -22738407 + LTR33A LTR ERVL 3 280 -243 1340 139 105 3 chrX 139861523 139861817 -22738113 - MER33 DNA MER1_type 0 324 1 825 251 62 88 chrX 139861817 139862055 -22737875 + LTR33A LTR ERVL 280 523 0 336 292 10 0 chrX 139862055 139862151 -22737779 + MIR SINE MIR 159 255 -7 544 274 55 90 chrX 139862547 139862749 -22737181 + MIR SINE MIR 11 204 -58 2255 61 0 11 chrX 139862749 139863029 -22736901 + AluY SINE Alu 35 311 0 544 274 55 90 chrX 139863029 139863081 -22736849 + MIR SINE MIR 204 256 -6 647 152 13 33 chrX 139863842 139863993 -22735937 - L1MA7 LINE L1 0 6291 6144 1620 187 3 18 chrX 139864272 139864556 -22735374 + AluJo SINE Alu 1 280 -32 207 0 0 0 chrX 139864557 139864580 -22735350 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 560 269 135 37 chrX 139864688 139865037 -22734893 - MLT1J2 LTR MaLR 0 450 68 206 265 0 0 chrX 139866661 139866710 -22733220 - L2 LINE L2 -2 3311 3263 622 299 42 9 chrX 139866770 139866984 -22732946 + MIR SINE MIR 37 257 -5 22 0 0 0 chrX 139867157 139867179 -22732751 + AT_rich Low_complexity Low_complexity 1 22 0 709 301 50 5 chrX 139867531 139867750 -22732180 + MIR SINE MIR 22 250 -12 198 238 0 30 chrX 139867763 139867864 -22732066 + CT-rich Low_complexity Low_complexity 2 99 0 383 200 0 0 chrX 139867944 139868019 -22731911 - MIR SINE MIR -10 252 178 1424 53 11 26 chrX 139868578 139868768 -22731162 + AluY SINE Alu 114 300 -11 1106 244 8 16 chrX 139869118 139869360 -22730570 - MIR SINE MIR -21 241 2 214 211 58 19 chrX 139869479 139869531 -22730399 + L2 LINE L2 3257 3310 -3 1244 261 80 11 chrX 139869858 139870234 -22729696 - MLT1I LTR MaLR -1 408 7 2101 108 11 4 chrX 139870730 139871048 -22728882 + AluSg SINE Alu 1 320 0 3812 193 41 13 chrX 139871089 139872067 -22727863 - L1MB5 LINE L1 -2 6172 5174 1528 212 7 10 chrX 139872069 139872357 -22727573 - AluJo SINE Alu -25 287 1 330 183 0 0 chrX 139872429 139872500 -22727430 + GA-rich Low_complexity Low_complexity 2 72 0 1548 266 68 46 chrX 139872520 139873310 -22726620 - L1M4 LINE L1 -5727 815 8 735 253 50 35 chrX 139873527 139873729 -22726201 + MIR SINE MIR 2 206 -56 995 265 43 17 chrX 139873750 139874052 -22725878 + LTR33 LTR ERVL 1 310 -211 246 225 0 28 chrX 139874098 139874169 -22725761 + LTR33 LTR ERVL 448 516 -5 822 295 42 4 chrX 139874470 139874711 -22725219 + MIR SINE MIR 3 252 -10 199 267 248 30 chrX 139875258 139875359 -22724571 - MIR SINE MIR -68 140 18 1910 135 54 37 chrX 139876200 139876549 -22723381 + MER34B LTR ERV1 4 358 -207 1196 337 28 35 chrX 139876562 139877168 -22722762 + L1PA16 LINE L1 53 654 -6185 355 316 0 22 chrX 139877180 139877319 -22722611 + L1PA16 LINE L1 1428 1563 -5276 303 122 0 0 chrX 139877641 139877690 -22722240 + (CAA)n Simple_repeat Simple_repeat 2 50 0 10801 237 36 11 chrX 139878075 139878379 -22721551 + L1PA16 LINE L1 1477 1772 -5077 3947 91 13 7 chrX 139878379 139878930 -22721000 + MER41A LTR ERV1 1 554 0 10801 237 36 11 chrX 139878930 139879166 -22720764 + L1PA16 LINE L1 1772 2001 -4848 2227 100 0 13 chrX 139879166 139879484 -22720446 + AluSg SINE Alu 1 310 0 10801 237 36 11 chrX 139879484 139880384 -22719546 + L1PA16 LINE L1 2001 2877 -3972 189 0 0 0 chrX 139880384 139880405 -22719525 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 10801 237 36 11 chrX 139880405 139881685 -22718245 + L1PA16 LINE L1 2877 4124 -2725 225 0 0 0 chrX 139881685 139881710 -22718220 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 10801 237 36 11 chrX 139881710 139883190 -22716740 + L1PA16 LINE L1 4124 5796 -1053 217 164 27 27 chrX 139883196 139883269 -22716661 + (TATAA)n Simple_repeat Simple_repeat 2 74 0 5371 135 5 41 chrX 139883269 139884357 -22715573 + L1PA16 LINE L1 5806 6863 -6 1052 128 0 31 chrX 139884358 139884384 -22715546 + MER34B LTR ERV1 348 373 -192 2447 111 11 3 chrX 139884384 139884745 -22715185 + THE1B LTR MaLR 1 364 0 1052 128 0 31 chrX 139884745 139884913 -22715017 + MER34B LTR ERV1 373 536 -29 283 324 20 29 chrX 139884921 139885023 -22714907 - L2 LINE L2 -31 3282 3182 676 297 25 5 chrX 139885126 139885328 -22714602 - MIR SINE MIR 0 262 57 22 0 0 0 chrX 139885379 139885401 -22714529 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 139886130 139886158 -22713772 + AT_rich Low_complexity Low_complexity 1 28 0 318 179 0 18 chrX 139886551 139886607 -22713323 - MER5A DNA MER1_type -5 184 130 334 264 56 35 chrX 139886625 139886769 -22713161 + LTR16A LTR ERVL 21 167 -283 1530 310 24 42 chrX 139886770 139887437 -22712493 + HERV16 LTR ERVL 562 1217 -3779 2418 42 56 0 chrX 139887437 139887725 -22712205 + AluY SINE Alu 1 304 -7 1530 310 24 42 chrX 139887725 139887776 -22712154 + HERV16 LTR ERVL 1217 1267 -3729 19101 169 47 10 chrX 139887776 139889522 -22710408 + L1M1 LINE L1 1 1681 -5884 204 40 0 0 chrX 139889522 139889547 -22710383 + (GA)n Simple_repeat Simple_repeat 2 26 0 19101 169 47 10 chrX 139889547 139892050 -22707880 + L1M1 LINE L1 1681 4425 -3140 9634 171 8 1 chrX 139892048 139893882 -22706048 + L1PA14 LINE L1 1841 3688 -2458 * 2308 99 23 0 chrX 139893897 139894201 -22705729 + AluSp SINE Alu 2 312 -1 322 183 12 12 chrX 139894203 139894285 -22705645 + GA-rich Low_complexity Low_complexity 3 84 0 * 360 0 0 0 chrX 139894275 139894315 -22705615 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 8992 158 12 3 chrX 139894315 139896793 -22703137 + L1PA14 LINE L1 3681 6156 -5 382 250 60 7 chrX 139896794 139896989 -22702941 - LTR53 LTR ERVL -95 424 189 275 137 0 0 chrX 139897307 139897358 -22702572 + L1MB1 LINE L1 6113 6163 -5 452 226 0 39 chrX 139897690 139897792 -22702138 + MIR SINE MIR 141 238 -24 914 241 49 0 chrX 139898482 139898685 -22701245 + MIR SINE MIR 50 262 0 316 377 95 30 chrX 139898746 139899176 -22700754 + L2 LINE L2 2815 3272 0 3211 256 8 24 chrX 139900263 139901068 -22698862 + L1PA15 LINE L1 1 792 -5995 4473 217 13 32 chrX 139901108 139902433 -22697497 + L1PA15 LINE L1 1212 2519 -4278 10708 210 7 15 chrX 139902466 139902987 -22696943 + L1PA15 LINE L1 3398 3922 -2894 2140 157 0 0 chrX 139902987 139903299 -22696631 + AluSx SINE Alu 1 312 0 10708 210 7 15 chrX 139903299 139903816 -22696114 + L1PA15 LINE L1 3922 4442 -2374 2257 119 0 6 chrX 139903816 139904128 -22695802 + AluSq SINE Alu 4 313 0 10708 210 7 15 chrX 139904128 139906512 -22693418 + L1PA15 LINE L1 4442 6806 -10 843 286 91 19 chrX 139906540 139906967 -22692963 - LTR33 LTR ERVL -22 499 42 859 180 33 0 chrX 139906995 139907178 -22692752 + MER53 DNA DNA 1 189 0 290 356 85 0 chrX 139907841 139907959 -22691971 - L2 LINE L2 -4 3268 3141 * 709 186 11 62 chrX 139907945 139908122 -22691808 - MIR SINE MIR -27 235 68 2689 141 41 16 chrX 139908909 139909419 -22690511 + L1MA7 LINE L1 5614 6136 -155 365 101 0 14 chrX 139909433 139909502 -22690428 + (TA)n Simple_repeat Simple_repeat 1 68 0 298 234 13 0 chrX 139909544 139909621 -22690309 - MER103 DNA DNA -88 78 1 201 95 95 0 chrX 139910596 139910638 -22689292 - L2 LINE L2 -4 3309 3264 181 360 0 10 chrX 139911129 139911229 -22688701 - MIR SINE MIR -54 208 110 386 302 160 13 chrX 139911335 139911560 -22688370 - MIR SINE MIR 0 262 5 557 265 40 0 chrX 139912107 139912258 -22687672 + MIR3 SINE MIR 40 196 -12 356 322 20 27 chrX 139913644 139913793 -22686137 - MIR3 SINE MIR -7 201 54 7869 22 1 0 chrX 139913794 139914755 -22685175 - L1HS LINE L1 -1226 4920 3959 7649 12 0 0 chrX 139914753 139916015 -22683915 + L1HS LINE L1 4894 6155 0 * 474 301 23 68 chrX 139916933 139917152 -22682778 - MIR SINE MIR 0 262 54 278 337 10 0 chrX 139918606 139918704 -22681226 + L3 LINE CR1 1373 1471 -106 267 279 100 84 chrX 139918997 139919255 -22680675 - MIR3 SINE MIR -1 261 4 337 354 81 58 chrX 139919688 139919996 -22679934 - L2 LINE L2 -38 3234 2920 502 131 0 0 chrX 139920096 139920180 -22679750 - L1M3 LINE L1 -440 5740 5657 366 280 26 26 chrX 139920184 139920377 -22679553 - L1M4c LINE L1 -4165 2481 2289 1073 192 4 15 chrX 139920390 139920650 -22679280 - L1MA3 LINE L1 0 6305 6049 3480 147 6 14 chrX 139920708 139921332 -22678598 - L1MA2 LINE L1 -255 6049 5431 3424 250 55 13 chrX 139921413 139922890 -22677040 - L1M4c LINE L1 -4544 2102 551 233 292 174 21 chrX 139922938 139923082 -22676848 + L2 LINE L2 3091 3256 -16 604 280 32 39 chrX 139923121 139923400 -22676530 + L1ME LINE L1 580 856 -5778 632 189 42 111 chrX 139923414 139923631 -22676299 - MER58C DNA MER1_type -13 202 1 1345 285 40 30 chrX 139923631 139924337 -22675593 + L1ME LINE L1 850 1562 -5072 207 0 0 0 chrX 139924552 139924575 -22675355 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 524 324 86 23 chrX 139924592 139924987 -22674943 + L1ME LINE L1 1 420 -6122 314 247 0 0 chrX 139925039 139925120 -22674810 + L1ME LINE L1 3507 3587 -3057 40268 70 7 3 chrX 139925124 139931238 -22668692 + L1PA5 LINE L1 4 6146 -8 2389 249 48 15 chrX 139931243 139932154 -22667776 + L1ME LINE L1 3571 4511 -2133 * 4153 179 73 13 chrX 139932152 139933202 -22666728 + L1MB5 LINE L1 5058 6166 -8 195 42 0 0 chrX 139933344 139933368 -22666562 + (CA)n Simple_repeat Simple_repeat 2 25 0 624 298 29 10 chrX 139933517 139933725 -22666205 + MIR SINE MIR 20 231 -31 417 381 52 18 chrX 139935585 139935971 -22663959 - L2 LINE L2 -938 2376 1978 1846 264 108 2 chrX 139936615 139937145 -22662785 + L1ME LINE L1 10 595 -5947 735 223 58 0 chrX 139937152 139937358 -22662572 + L1ME LINE L1 5117 5334 -1310 1740 197 36 80 chrX 139937361 139937504 -22662426 + L1MB7 LINE L1 4753 4901 -1277 1996 129 3 0 chrX 139937504 139937790 -22662140 - AluSc SINE Alu -22 287 1 1740 197 36 80 chrX 139937790 139938516 -22661414 + L1MB7 LINE L1 4901 5565 -613 908 215 5 0 chrX 139938527 139938718 -22661212 + L1PB1 LINE L1 6 197 -6666 * 14809 194 13 8 chrX 139938715 139943732 -22656198 + L1PB1 LINE L1 1392 6489 -378 1948 125 0 3 chrX 139943733 139944061 -22655869 + L1PB1 LINE L1 6561 6887 0 2406 219 41 14 chrX 139944061 139944618 -22655312 + L1MB7 LINE L1 5556 6127 -57 361 257 99 0 chrX 139944618 139944719 -22655211 - L1PB4 LINE L1 0 6156 6046 237 161 36 18 chrX 139944767 139944823 -22655107 + L1MB8 LINE L1 6105 6161 -17 278 156 0 0 chrX 139944850 139944895 -22655035 - Tigger1 DNA MER2_type -2373 45 1 572 326 92 45 chrX 139944895 139945364 -22654566 + L2 LINE L2 1796 2286 -1028 22 0 0 0 chrX 139945511 139945533 -22654397 + AT_rich Low_complexity Low_complexity 1 22 0 181 270 0 0 chrX 139945865 139945902 -22654028 + L2 LINE L2 2323 2359 -955 764 320 17 0 chrX 139945939 139946170 -22653760 + MIR SINE MIR 4 238 -24 216 403 25 0 chrX 139946214 139946373 -22653557 + L2 LINE L2 2367 2529 -785 220 376 35 35 chrX 139946418 139946503 -22653427 - L2 LINE L2 -49 3223 3139 320 335 74 42 chrX 139946705 139947036 -22652894 - L2 LINE L2 -212 3060 2716 5445 257 85 4 chrX 139947222 139948537 -22651393 + L1PB4 LINE L1 2 1423 -5426 545 68 0 14 chrX 139948538 139948611 -22651319 - THE1C LTR MaLR 0 364 293 3133 30 0 0 chrX 139948611 139948982 -22650948 - L1PA3 LINE L1 0 6155 5785 4185 21 2 0 chrX 139948982 139949688 -22650242 + L1P1 LINE L1 5033 5739 -416 2172 94 16 7 chrX 139949689 139949998 -22649932 - THE1C LTR MaLR -62 313 2 2333 176 19 4 chrX 139949999 139950464 -22649466 + L1PB4 LINE L1 1420 1891 -4958 44 20 0 0 chrX 139950464 139950515 -22649415 + AT_rich Low_complexity Low_complexity 1 51 0 328 237 0 0 chrX 139950517 139950576 -22649354 + L1 LINE L1 1064 1122 -5727 41 21 0 0 chrX 139950576 139950624 -22649306 + AT_rich Low_complexity Low_complexity 1 48 0 4630 194 33 23 chrX 139950624 139952238 -22647692 + L1 LINE L1 1896 3522 -3326 2064 134 3 0 chrX 139952238 139952545 -22647385 + AluSp SINE Alu 1 308 -5 5901 185 13 7 chrX 139952645 139953833 -22646097 + L1 LINE L1 4542 5736 -1112 11796 207 24 9 chrX 139953838 139954746 -22645184 + L1PB4 LINE L1 3300 4193 -2665 2111 118 7 0 chrX 139954746 139955035 -22644895 - AluSx SINE Alu -21 291 1 11796 207 24 9 chrX 139955035 139956981 -22642949 + L1PB4 LINE L1 4193 6193 -665 40060 73 7 6 chrX 139956981 139963126 -22636804 + L1PA5 LINE L1 1 6147 -7 3677 140 45 9 chrX 139963193 139963842 -22636088 + L1PB4 LINE L1 6175 6846 -12 609 151 17 122 chrX 139964071 139964243 -22635687 - L1MA9 LINE L1 -39 6273 6120 641 204 8 15 chrX 139964408 139964540 -22635390 - L1MB7 LINE L1 -80 6104 5974 187 345 71 12 chrX 139964569 139964653 -22635277 + L2 LINE L2 2970 3058 -214 2116 121 0 10 chrX 139964748 139965053 -22634877 - AluSx SINE Alu -10 302 1 340 326 108 31 chrX 139965067 139965196 -22634734 + L2 LINE L2 3134 3272 0 494 249 92 29 chrX 139966283 139966456 -22633474 - MIR3 SINE MIR -7 201 18 217 239 0 0 chrX 139967131 139967177 -22632753 - L2 LINE L2 -12 3260 3215 431 276 35 0 chrX 139967453 139967569 -22632361 + MIR SINE MIR 21 140 -68 205 240 40 0 chrX 139967774 139967824 -22632106 + L3 LINE CR1 1523 1574 -3 2253 114 7 0 chrX 139967829 139968137 -22631793 - AluSx SINE Alu -2 310 1 2259 96 7 0 chrX 139969050 139969341 -22630589 - AluSg SINE Alu -16 294 2 22 0 0 0 chrX 139969360 139969382 -22630548 + AT_rich Low_complexity Low_complexity 1 22 0 385 186 59 39 chrX 139969631 139969733 -22630197 - L1MA10 LINE L1 -51 6283 6180 2642 147 36 2 chrX 139969746 139970417 -22629513 - L1MA10 LINE L1 -541 5750 5058 1749 176 62 102 chrX 139970575 139970724 -22629206 + L1MB7 LINE L1 5621 5775 -409 297 0 0 0 chrX 139970724 139970757 -22629173 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1749 176 62 102 chrX 139970757 139971174 -22628756 + L1MB7 LINE L1 5775 6164 -20 2553 175 29 20 chrX 139971198 139971263 -22628667 - L1M2 LINE L1 -628 5663 5600 950 42 0 0 chrX 139971263 139971382 -22628548 - L1PA4 LINE L1 -1 6154 6036 2553 175 29 20 chrX 139971382 139972278 -22627652 - L1M2 LINE L1 -691 5600 4691 234 196 35 189 chrX 139972283 139972426 -22627504 + MER21A LTR ERV1 417 537 -394 316 135 14 14 chrX 139972435 139972509 -22627421 + L1MA4 LINE L1 6227 6300 0 1824 230 49 18 chrX 139972524 139973362 -22626568 - L1M2 LINE L1 -1462 4684 2489 195 42 0 0 chrX 139973401 139973425 -22626505 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7043 104 6 6 chrX 139973425 139974453 -22625477 - L1MA1 LINE L1 -3 6299 5272 1630 217 9 7 chrX 139974436 139974869 -22625061 - L1 LINE L1 -2691 4874 4441 * 1348 86 0 6 chrX 139974891 139975066 -22624864 - AluSp SINE Alu -3 310 137 956 184 5 20 chrX 139975067 139975263 -22624667 - L1 LINE L1 -3184 4381 4189 * 4027 237 13 3 chrX 139975260 139976117 -22623813 - L1 LINE L1 -6268 1297 433 11041 150 5 6 chrX 139976191 139977913 -22622017 - LTR57-int LTR ERVL -2412 2931 1212 7254 144 16 22 chrX 139977926 139979193 -22620737 - LTR57-int LTR ERVL -4083 1260 2 1796 142 26 23 chrX 139979194 139979504 -22620426 - LTR57 LTR ERVL 0 411 101 1592 263 15 19 chrX 139979520 139979999 -22619931 - L1PA12 LINE L1 -4923 2658 2182 342 306 10 0 chrX 139980233 139980331 -22619599 - L1PA12 LINE L1 -5399 2182 2084 1183 339 41 14 chrX 139980483 139981050 -22618880 - L1PA12 LINE L1 -6203 1371 790 2211 112 37 0 chrX 139981180 139981528 -22618402 + L1MA6 LINE L1 5940 6300 0 1895 245 77 27 chrX 139981581 139982242 -22617688 - L1MEc LINE L1 -5234 1162 469 532 201 126 31 chrX 139982242 139982401 -22617529 + MLT1B LTR MaLR 2 175 -215 858 150 0 0 chrX 139982405 139982558 -22617372 + CT-rich Low_complexity Low_complexity 2 154 0 682 260 30 15 chrX 139982559 139982759 -22617171 + MLT1B LTR MaLR 188 390 0 1280 248 63 63 chrX 139982762 139983190 -22616740 - L1MEc LINE L1 -5925 471 44 465 295 87 19 chrX 139983434 139983641 -22616289 - MIR SINE MIR -6 256 36 402 347 83 0 chrX 139983675 139983819 -22616111 + L2 LINE L2 3117 3272 0 604 204 128 23 chrX 139984689 139984861 -22615069 - MIR3 SINE MIR -3 205 16 253 336 164 18 chrX 139985058 139985284 -22614646 + L2 LINE L2 1218 1476 -1838 884 361 40 25 chrX 139985421 139985991 -22613939 + L2 LINE L2 1709 2287 -1027 1679 118 0 12 chrX 139985998 139986244 -22613686 - AluSg/x SINE Alu 0 312 70 297 396 21 27 chrX 139986385 139986572 -22613358 + L2 LINE L2 2637 2822 -492 24 32 0 0 chrX 139986950 139986981 -22612949 + AT_rich Low_complexity Low_complexity 1 31 0 329 354 164 11 chrX 139987015 139987368 -22612562 + L2 LINE L2 2471 2877 -437 226 51 0 169 chrX 139987453 139987512 -22612418 + L1PA8 LINE L1 6124 6172 0 285 333 12 0 chrX 139987587 139987668 -22612262 + L2 LINE L2 3230 3311 -2 2014 180 41 53 chrX 139988496 139989007 -22610923 - MLT1D LTR MaLR 0 505 1 991 265 4 16 chrX 139990013 139990152 -22609778 - MLT2F LTR ERVL -9 654 518 2270 145 20 32 chrX 139990152 139990500 -22609430 - MER57A LTR ERV1 0 403 59 2428 94 0 0 chrX 139990500 139990807 -22609123 + AluSx SINE Alu 1 307 -5 2270 145 20 32 chrX 139990807 139990866 -22609064 - MER57A LTR ERV1 -344 59 1 991 265 4 16 chrX 139990866 139990983 -22608947 - MLT2F LTR ERVL -145 518 401 326 385 0 0 chrX 139991016 139991112 -22608818 - MLT2F LTR ERVL -218 445 350 5582 238 60 31 chrX 139991120 139992655 -22607275 - ERVL LTR ERVL -1193 4571 2993 1400 247 44 15 chrX 139992666 139993181 -22606749 - ERVL LTR ERVL -3223 2541 1912 455 200 22 26 chrX 139993593 139993771 -22606159 + MER34C LTR ERV1 11 251 -409 6670 59 0 5 chrX 139993873 139994715 -22605215 - L1PA6 LINE L1 -4 6150 5313 728 218 86 50 chrX 139994719 139994999 -22604931 + MER34B LTR ERV1 270 559 -6 1351 307 82 12 chrX 139995013 139995524 -22604406 - MLT2F LTR ERVL -103 560 14 290 299 78 58 chrX 139995534 139995688 -22604242 - L2 LINE L2 0 3272 3116 280 300 98 35 chrX 139995831 139996115 -22603815 - L2 LINE L2 -221 3051 2715 184 359 95 18 chrX 139996254 139996538 -22603392 - L2 LINE L2 -882 2432 2127 1031 81 0 0 chrX 139996563 139996699 -22603231 + AluSg/x SINE Alu 177 312 0 294 360 105 5 chrX 139996704 139996904 -22603026 - L2 LINE L2 -1232 2082 1863 252 352 48 0 chrX 139998423 139998528 -22601402 + MER91C DNA MER1_type 31 140 0 1972 108 0 87 chrX 139998873 139999196 -22600734 - AluSx SINE Alu -17 295 1 1606 217 19 31 chrX 139999552 139999911 -22600019 - MLT1A1 LTR MaLR 0 365 11 937 222 133 7 chrX 139999957 140000250 -22599680 - L1M4 LINE L1 -2215 3931 3602 1328 188 89 63 chrX 140000269 140000683 -22599247 + MSTC LTR MaLR 4 428 0 4928 240 88 36 chrX 140000683 140002252 -22597678 + MSTC-int LTR MaLR 1 1651 0 899 201 34 57 chrX 140002254 140002517 -22597413 + MSTC LTR MaLR 3 259 -169 485 285 89 33 chrX 140002552 140003128 -22596802 - L1M2 LINE L1 -738 5553 4942 453 155 24 0 chrX 140003255 140003339 -22596591 - L1MB7 LINE L1 -25 6159 6074 309 253 0 53 chrX 140003363 140003458 -22596472 - L1MC4 LINE L1 -1339 6703 6614 * 407 256 0 0 chrX 140003428 140003518 -22596412 + L1MC4 LINE L1 6614 6703 -1339 302 277 0 53 chrX 140003519 140003613 -22596317 + L1MC4 LINE L1 6615 6703 -1339 2162 176 70 157 chrX 140003634 140004027 -22595903 - L1MB7 LINE L1 -175 6009 5724 816 107 0 0 chrX 140004027 140004148 -22595782 + (TA)n Simple_repeat Simple_repeat 1 121 0 2162 176 70 157 chrX 140004148 140004582 -22595348 - L1MB7 LINE L1 -460 5724 5254 1160 233 44 100 chrX 140004586 140005078 -22594852 + MLT1D LTR MaLR 1 430 -37 665 299 41 0 chrX 140005109 140005303 -22594627 - LTR16A LTR ERVL -19 431 230 567 355 71 29 chrX 140006344 140006726 -22593204 - LTR16B LTR ERVL -2 462 106 2901 13 0 0 chrX 140006726 140007044 -22592886 - AluYb8 SINE Alu 0 318 1 567 355 71 29 chrX 140007044 140007150 -22592780 - LTR16B LTR ERVL -358 106 6 540 244 16 0 chrX 140007874 140008001 -22591929 + MIR SINE MIR 116 244 -18 1972 177 5 11 chrX 140008143 140008510 -22591420 - MLT1A1 LTR MaLR 0 365 1 1750 37 0 0 chrX 140008876 140009094 -22590836 - L1P2 LINE L1 -683 5471 5254 396 0 0 0 chrX 140009140 140009184 -22590746 + (TA)n Simple_repeat Simple_repeat 2 45 0 33 43 0 0 chrX 140009211 140009258 -22590672 + AT_rich Low_complexity Low_complexity 1 47 0 4865 45 5 5 chrX 140011011 140011616 -22588314 - L1PA5 LINE L1 -3 6151 5547 1788 33 0 0 chrX 140011616 140011830 -22588100 + L1PA5 LINE L1 5343 5556 -598 21 36 0 0 chrX 140011959 140011987 -22587943 + AT_rich Low_complexity Low_complexity 1 28 0 389 292 52 85 chrX 140012777 140013468 -22586462 + HAL1 LINE L1 967 1634 -873 1715 119 61 51 chrX 140013477 140013619 -22586311 + AluSq SINE Alu 1 140 -173 243 0 0 0 chrX 140013619 140013646 -22586284 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1715 119 61 51 chrX 140013646 140013797 -22586133 + AluSq SINE Alu 140 297 -16 248 396 42 0 chrX 140014126 140014270 -22585660 - L2 LINE L2 -7 3265 3116 2800 13 0 0 chrX 140014642 140014949 -22584981 + AluY SINE Alu 1 307 -4 3527 204 120 97 chrX 140015713 140016278 -22583652 - L1MD3 LINE L1 0 7995 7445 526 232 9 9 chrX 140016278 140016390 -22583540 - MLT1F1 LTR MaLR -448 119 8 3527 204 120 97 chrX 140016390 140017059 -22582871 - L1MD3 LINE L1 -550 7445 6619 1002 174 37 69 chrX 140017069 140017287 -22582643 + MER20 DNA MER1_type 1 211 -8 348 138 0 0 chrX 140017311 140017376 -22582554 + L1MA9 LINE L1 5320 5384 -907 23 0 0 0 chrX 140017425 140017448 -22582482 + AT_rich Low_complexity Low_complexity 1 23 0 3403 191 72 33 chrX 140017448 140018295 -22581635 + L1MA9 LINE L1 5395 6274 -38 4167 235 76 13 chrX 140018305 140019627 -22580303 - L1MC3 LINE L1 -743 5403 5156 * 4671 207 42 37 chrX 140019620 140020903 -22579027 - L1MD1 LINE L1 0 6242 4949 194 0 39 0 chrX 140020903 140020929 -22579001 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4671 207 42 37 chrX 140020929 140021389 -22578541 - L1MD1 LINE L1 -1293 4949 4493 1540 237 39 24 chrX 140021393 140021900 -22578030 - L1MD1 LINE L1 -1821 4325 3811 1655 226 41 37 chrX 140021902 140022437 -22577493 - L1MC3 LINE L1 -975 5171 4635 724 254 78 0 chrX 140022867 140023060 -22576870 + LTR50 LTR ERVL 1 208 -587 446 256 33 52 chrX 140023300 140023552 -22576378 + LTR41 LTR ERVL 503 785 -10 668 286 87 0 chrX 140024209 140024415 -22575515 + MER58A DNA MER1_type 1 224 0 228 254 45 15 chrX 140024576 140024643 -22575287 - MIR3 SINE MIR -27 181 113 728 208 196 0 chrX 140024766 140024934 -22574996 + MIR SINE MIR 60 260 -2 362 329 18 116 chrX 140026005 140026120 -22573810 - L2 LINE L2 -19 3253 3179 2346 116 40 8 chrX 140026120 140026473 -22573457 - THE1B LTR MaLR 0 364 1 362 329 18 116 chrX 140026473 140026634 -22573296 - L2 LINE L2 -93 3179 3004 1083 169 0 0 chrX 140026793 140026982 -22572948 + L1MB3 LINE L1 5592 5780 -403 772 149 75 0 chrX 140026987 140027148 -22572782 + L1MB3 LINE L1 6002 6174 -9 334 350 34 17 chrX 140028323 140028500 -22571430 - MIR SINE MIR -72 190 11 21 0 0 0 chrX 140028838 140028859 -22571071 + AT_rich Low_complexity Low_complexity 1 21 0 188 33 0 33 chrX 140028961 140028991 -22570939 + (GATTG)n Simple_repeat Simple_repeat 1 29 0 734 194 0 47 chrX 140029791 140030002 -22569928 - L1MC5 LINE L1 -163 7798 7598 1592 176 9 16 chrX 140030153 140030476 -22569454 + L1MC1 LINE L1 6013 6333 0 683 180 31 57 chrX 140030638 140030832 -22569098 + MER53 DNA DNA 1 189 0 232 294 18 33 chrX 140031633 140031754 -22568176 - MIR SINE MIR -95 113 5 21 0 0 0 chrX 140032210 140032231 -22567699 + AT_rich Low_complexity Low_complexity 1 21 0 1213 166 59 4 chrX 140032744 140033015 -22566915 - L1MA8 LINE L1 -3 6288 6003 247 226 0 19 chrX 140033638 140033691 -22566239 - MIR SINE MIR -14 248 197 22 0 0 0 chrX 140034192 140034214 -22565716 + AT_rich Low_complexity Low_complexity 1 22 0 2183 108 6 32 chrX 140034370 140034684 -22565246 - AluSx SINE Alu 0 312 7 270 81 0 0 chrX 140034779 140034816 -22565114 + (GA)n Simple_repeat Simple_repeat 2 38 0 321 300 43 93 chrX 140035086 140035226 -22564704 - MIR3 SINE MIR -64 144 12 560 185 0 0 chrX 140035357 140035465 -22564465 + L1MA8 LINE L1 6183 6290 -1 546 325 93 33 chrX 140036556 140037096 -22562834 - L2 LINE L2 -254 3018 2449 1349 267 39 3 chrX 140037110 140037473 -22562457 + L2 LINE L2 2339 2714 -600 335 322 151 17 chrX 140037538 140037895 -22562035 + L1MC4 LINE L1 7494 7898 -144 25 51 0 0 chrX 140037965 140038004 -22561926 + AT_rich Low_complexity Low_complexity 1 39 0 973 272 133 26 chrX 140038007 140038560 -22561370 + L2 LINE L2 2704 3308 -5 246 276 40 0 chrX 140038576 140038652 -22561278 - L2 LINE L2 -935 2379 2301 303 367 135 26 chrX 140038882 140039768 -22560162 - L2 LINE L2 -1194 2120 1138 635 284 131 0 chrX 140039809 140040031 -22559899 + MIR SINE MIR 2 252 -10 212 361 68 59 chrX 140040048 140040372 -22559558 - L2 LINE L2 -2223 1091 765 2071 147 0 3 chrX 140040404 140040710 -22559220 - AluJb SINE Alu -1 311 7 360 217 24 0 chrX 140040712 140040795 -22559135 - MLT1C LTR MaLR -382 85 1 898 261 70 46 chrX 140041035 140041491 -22558439 - MLT1C LTR MaLR 0 467 1 1817 193 34 0 chrX 140044449 140044802 -22555128 + MLT1A1 LTR MaLR 1 365 0 340 277 160 29 chrX 140044827 140045033 -22554897 - L2 LINE L2 -4 3309 3077 565 201 223 0 chrX 140045109 140045248 -22554682 - MER58A DNA MER1_type -8 216 47 1478 288 79 83 chrX 140045258 140046261 -22553669 - L2 LINE L2 -338 2976 1978 3344 172 26 66 chrX 140047058 140047629 -22552301 - L1M4 LINE L1 -432 5746 5252 2437 86 3 0 chrX 140047629 140047930 -22552000 - AluSp SINE Alu -11 302 1 3344 172 26 66 chrX 140047930 140048539 -22551391 - L1M4 LINE L1 -926 5252 4620 1141 149 16 0 chrX 140048529 140048723 -22551207 - L1M3 LINE L1 -777 5557 5361 * 3642 183 19 54 chrX 140048839 140049409 -22550521 - L1M3 LINE L1 -813 5333 4802 1619 171 68 0 chrX 140049409 140049701 -22550229 - AluJb SINE Alu 0 312 1 3642 183 19 54 chrX 140049701 140049988 -22549942 - L1M3 LINE L1 -1344 4802 4506 39792 76 6 2 chrX 140049993 140056119 -22543811 + L1PA5 LINE L1 4 6154 0 25 0 0 0 chrX 140056119 140056144 -22543786 + AT_rich Low_complexity Low_complexity 1 25 0 2110 177 47 13 chrX 140056145 140056597 -22543333 - L1M3 LINE L1 -1632 4514 4048 679 274 68 4 chrX 140056709 140056946 -22542984 - L1M4 LINE L1 -6289 253 2 24 53 0 0 chrX 140057346 140057384 -22542546 + AT_rich Low_complexity Low_complexity 1 38 0 234 368 0 19 chrX 140057502 140057608 -22542322 - MIR SINE MIR -89 119 16 608 363 58 29 chrX 140058761 140059072 -22540858 - L2 LINE L2 -18 3254 2935 311 189 0 0 chrX 140059345 140059398 -22540532 - MIR SINE MIR -89 173 121 723 205 48 36 chrX 140059688 140059939 -22539991 + MER39 LTR ERV1 148 441 -266 21 36 0 0 chrX 140060241 140060269 -22539661 + AT_rich Low_complexity Low_complexity 1 28 0 209 314 0 0 chrX 140060415 140060466 -22539464 - MIR SINE MIR -142 66 16 1956 181 29 35 chrX 140060533 140061095 -22538835 - MLT2A2 LTR ERVL 0 554 1 2449 97 0 50 chrX 140061095 140061347 -22538583 - HERVL-A2 LTR ERVL 0 5654 5428 1927 128 7 39 chrX 140061347 140061652 -22538278 - AluSq SINE Alu -18 295 1 2449 97 0 50 chrX 140061652 140061801 -22538129 - HERVL-A2 LTR ERVL -226 5428 5273 2898 124 0 10 chrX 140061801 140062293 -22537637 - THE1B-int LTR MaLR -1150 430 2 2472 124 3 3 chrX 140062314 140062669 -22537261 - THE1B LTR MaLR -6 358 4 1059 295 65 17 chrX 140063646 140064049 -22535881 + LTR16A LTR ERVL 16 437 -13 182 359 66 0 chrX 140066543 140066649 -22533281 + MIR SINE MIR 36 148 -60 420 311 14 20 chrX 140066678 140066826 -22533104 - MIR SINE MIR -11 251 105 210 118 0 0 chrX 140067691 140067725 -22532205 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 359 355 36 7 chrX 140067727 140067865 -22532065 - L2 LINE L2 -32 3240 3099 4914 46 13 0 chrX 140067954 140068561 -22531369 - L1PA7 LINE L1 -13 6141 5527 1982 97 0 0 chrX 140068561 140068911 -22531019 + L1PA7 LINE L1 5180 5529 -625 604 168 20 34 chrX 140069269 140069418 -22530512 + L1MA10 LINE L1 6180 6326 -8 290 329 0 0 chrX 140069420 140069490 -22530440 - L2 LINE L2 -16 3256 3187 353 157 100 0 chrX 140069511 140069581 -22530349 - MER116 DNA Mariner -3 77 1 230 260 0 52 chrX 140069610 140069687 -22530243 - MIR SINE MIR -93 169 97 463 304 25 0 chrX 140070204 140070362 -22529568 + MIR SINE MIR 101 262 0 191 366 10 50 chrX 140070550 140070752 -22529178 - L2 LINE L2 -188 3084 2891 1397 233 64 21 chrX 140070989 140071362 -22528568 + L1MC4 LINE L1 7418 7806 -236 836 122 90 0 chrX 140071673 140071829 -22528101 - L1MA4 LINE L1 -9 6291 6122 234 111 0 0 chrX 140071852 140071888 -22528042 + L1MA4 LINE L1 6121 6156 -144 369 0 0 0 chrX 140072558 140072599 -22527331 + (TG)n Simple_repeat Simple_repeat 2 42 0 861 269 67 5 chrX 140072600 140072823 -22527107 - MIR SINE MIR -25 237 1 712 256 27 36 chrX 140072879 140073098 -22526832 + MIR SINE MIR 46 262 0 251 336 44 36 chrX 140073295 140073432 -22526498 - L2 LINE L2 -2 3270 3133 544 251 53 40 chrX 140073735 140073962 -22525968 + L2 LINE L2 3083 3312 -1 508 278 161 0 chrX 140074068 140074230 -22525700 - MIR SINE MIR -17 245 58 905 264 14 0 chrX 140075017 140075188 -22524742 - MER58A DNA MER1_type -2197 223 47 2303 59 0 14 chrX 140075188 140075474 -22524456 + AluY SINE Alu 1 282 -29 905 264 14 0 chrX 140075474 140075522 -22524408 - MER58A DNA MER1_type -2373 47 1 457 271 72 6 chrX 140076740 140076908 -22523022 + MIR3 SINE MIR 2 178 -30 375 264 91 18 chrX 140076982 140077092 -22522838 - L2 LINE L2 0 3272 3155 399 340 32 26 chrX 140077708 140077864 -22522066 - L2 LINE L2 -4 3268 3112 240 307 27 0 chrX 140077868 140077943 -22521987 + L2 LINE L2 3199 3275 -38 227 347 131 0 chrX 140077958 140078157 -22521773 - L2 LINE L2 -704 2610 2386 705 280 23 6 chrX 140078960 140079135 -22520795 + MIR3 SINE MIR 17 194 -14 2466 123 31 19 chrX 140079461 140079820 -22520110 + THE1B LTR MaLR 1 363 -1 274 246 184 35 chrX 140080699 140080813 -22519117 + MER20B DNA MER1_type 37 167 -616 507 271 42 0 chrX 140081004 140081148 -22518782 + MIR3 SINE MIR 44 193 -15 417 262 105 64 chrX 140081159 140081331 -22518599 + MER5A DNA MER1_type 8 186 -3 348 64 0 0 chrX 140082185 140082232 -22517698 + (CA)n Simple_repeat Simple_repeat 2 48 0 39531 80 7 8 chrX 140082428 140088576 -22511354 + L1PA6 LINE L1 11 6154 0 23 33 0 0 chrX 140088590 140088620 -22511310 + AT_rich Low_complexity Low_complexity 1 30 0 215 268 56 0 chrX 140089450 140089521 -22510409 - L2 LINE L2 -61 3211 3137 667 275 31 16 chrX 140089679 140089872 -22510058 + MIR SINE MIR 22 217 -45 404 275 30 15 chrX 140090252 140090383 -22509547 - MIR SINE MIR -36 226 94 1480 209 49 44 chrX 140090387 140090794 -22509136 + MLT2D LTR ERVL 6 414 0 29 60 0 0 chrX 140090805 140090855 -22509075 + AT_rich Low_complexity Low_complexity 1 50 0 560 190 0 0 chrX 140091468 140091568 -22508362 + L1PB4 LINE L1 6052 6151 -5 329 286 16 56 chrX 140091688 140091814 -22508116 - L2 LINE L2 -1 3271 3151 505 274 86 27 chrX 140092512 140092698 -22507232 + MIR SINE MIR 48 244 -18 213 276 11 58 chrX 140093321 140093408 -22506522 + MIR SINE MIR 67 149 -59 3829 107 6 14 chrX 140093704 140094397 -22505533 + L1PB1 LINE L1 5105 5790 -361 400 155 0 21 chrX 140094398 140094495 -22505435 + (TA)n Simple_repeat Simple_repeat 1 95 0 2380 140 14 8 chrX 140094495 140094509 -22505421 + L1PB1 LINE L1 5782 5794 -357 189 0 0 0 chrX 140094509 140094530 -22505400 + (CA)n Simple_repeat Simple_repeat 2 22 0 2380 140 14 8 chrX 140094530 140094879 -22505051 + L1PB1 LINE L1 5794 6147 -4 25 31 0 0 chrX 140094879 140094911 -22505019 + AT_rich Low_complexity Low_complexity 1 32 0 1940 116 3 18 chrX 140094920 140095031 -22504899 + AluSc SINE Alu 1 112 -206 1799 29 0 5 chrX 140095031 140095236 -22504694 + L1PA4 LINE L1 5951 6154 -1 1940 116 3 18 chrX 140095236 140095446 -22504484 + AluSc SINE Alu 112 318 0 1872 165 85 46 chrX 140096425 140096837 -22503093 + MSTA LTR MaLR 1 428 0 1519 274 76 23 chrX 140096972 140097541 -22502389 - HAL1 LINE L1 -700 1807 1209 1236 235 79 21 chrX 140097561 140097939 -22501991 - L1ME1 LINE L1 -4 6162 5763 1822 257 31 30 chrX 140098021 140098534 -22501396 + MLT1E2 LTR MaLR 51 531 -62 300 235 53 59 chrX 140098553 140098723 -22501207 - HAL1 LINE L1 -1343 1164 996 22 35 0 0 chrX 140099150 140099179 -22500751 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 140099744 140099767 -22500163 + AT_rich Low_complexity Low_complexity 1 23 0 388 276 37 22 chrX 140100061 140100195 -22499735 - L2 LINE L2 -1304 2010 1875 450 369 73 31 chrX 140100457 140101032 -22498898 + L2 LINE L2 2128 2740 -574 207 69 0 0 chrX 140101032 140101061 -22498869 + (CCAA)n Simple_repeat Simple_repeat 4 32 0 450 369 73 31 chrX 140101061 140101201 -22498729 + L2 LINE L2 2740 2873 -441 1708 198 13 35 chrX 140101426 140101799 -22498131 + MLT1A1 LTR MaLR 1 365 0 1508 217 4 0 chrX 140101901 140102182 -22497748 + AluJo SINE Alu 1 282 -30 471 130 0 0 chrX 140102184 140102261 -22497669 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 222 274 60 24 chrX 140102279 140102363 -22497567 - MIR SINE MIR -78 130 44 180 339 46 37 chrX 140102491 140102600 -22497330 + L2 LINE L2 3199 3308 -5 258 301 20 123 chrX 140102767 140102970 -22496960 - MIR3 SINE MIR -5 203 22 191 290 150 50 chrX 140103010 140103110 -22496820 + MIR SINE MIR 15 124 -138 1246 205 53 19 chrX 140103759 140104022 -22495908 - MLT1E1 LTR MaLR -382 272 1 253 298 132 0 chrX 140104022 140104136 -22495794 - MLT1E1-int LTR MaLR 0 1371 1243 539 311 30 0 chrX 140104257 140104424 -22495506 - MIR SINE MIR -43 219 48 407 261 61 67 chrX 140104711 140104891 -22495039 + MIR3 SINE MIR 16 194 -14 200 269 0 0 chrX 140105393 140105445 -22494485 - L2 LINE L2 -1 3312 3261 207 300 0 0 chrX 140105610 140105660 -22494270 + C-rich Low_complexity Low_complexity 5 54 0 524 195 0 0 chrX 140105690 140105777 -22494153 - Tigger7 DNA MER2_type -1 2586 2500 * 6264 157 27 2 chrX 140105775 140106776 -22493154 - Tigger7 DNA MER2_type -1461 1026 1 3827 152 46 37 chrX 140106780 140107479 -22492451 + MER39 LTR ERV1 3 707 0 702 280 69 4 chrX 140109530 140109762 -22490168 + MIR SINE MIR 15 261 -1 459 264 8 39 chrX 140110134 140110263 -22489667 + L2 LINE L2 2579 2703 -611 230 264 154 33 chrX 140110264 140110355 -22489575 + MER5B DNA MER1_type 1 102 -76 310 241 129 26 chrX 140110360 140110476 -22489454 + L2 LINE L2 2718 2845 -469 2979 70 123 0 chrX 140110476 140110875 -22489055 + LTR7 LTR ERV1 1 448 -2 14363 101 17 26 chrX 140110877 140113715 -22486215 + HERVH LTR ERV1 1 2681 -5032 859 104 2 70 chrX 140113815 140114014 -22485916 - LTR7 LTR ERV1 -213 237 1 2471 97 45 13 chrX 140114014 140114394 -22485536 - HERVH LTR ERV1 0 7713 7322 1356 138 18 5 chrX 140114392 140114609 -22485321 - HERVH LTR ERV1 -1894 5819 5600 * 4346 142 5 1 chrX 140114613 140115270 -22484660 - HERVH LTR ERV1 -2567 5146 4488 3421 107 10 6 chrX 140115268 140115774 -22484156 - HERVH LTR ERV1 -3714 3999 3492 * 846 169 20 0 chrX 140115764 140115912 -22484018 - HERVH LTR ERV1 -4423 3290 3140 * 20076 108 16 14 chrX 140115906 140118888 -22481042 - HERVH LTR ERV1 -4726 2987 1 2695 87 122 8 chrX 140118890 140119292 -22480638 - LTR7 LTR ERV1 -2 448 1 1873 90 147 0 chrX 140119292 140119592 -22480338 - LTR7 LTR ERV1 -106 344 1 1269 284 63 35 chrX 140119592 140120053 -22479877 + L2 LINE L2 2840 3313 0 189 270 30 70 chrX 140120848 140120948 -22478982 + L2 LINE L2 3001 3096 -217 466 231 10 10 chrX 140120995 140121099 -22478831 + MIR SINE MIR 10 113 -149 4012 262 99 26 chrX 140121100 140121408 -22478522 + L1ME4a LINE L1 599 883 -5332 2210 186 62 2 chrX 140121408 140121812 -22478118 - MSTA LTR MaLR 0 428 1 4012 262 99 26 chrX 140121812 140124493 -22475437 + L1ME4a LINE L1 883 3783 -2432 1009 278 0 0 chrX 140124848 140125071 -22474859 - MER58A DNA MER1_type -1 223 1 342 288 89 31 chrX 140125169 140125360 -22474570 + L1ME4a LINE L1 5765 5966 -224 536 296 213 24 chrX 140125361 140125875 -22474055 + L2 LINE L2 2601 3227 -86 273 98 0 0 chrX 140126062 140126103 -22473827 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 128 21 0 chrX 140126433 140126480 -22473450 + (TA)n Simple_repeat Simple_repeat 2 49 0 * 10905 188 19 21 chrX 140126435 140126667 -22473263 - L1P4 LINE L1 -470 5698 5467 2758 118 3 3 chrX 140126667 140127031 -22472899 + THE1B LTR MaLR 1 364 0 10905 188 19 21 chrX 140127031 140128268 -22471662 - L1P4 LINE L1 -701 5467 4229 5314 65 0 0 chrX 140128268 140128934 -22470996 - L1PA6 LINE L1 -2 6152 5487 10905 188 19 21 chrX 140128934 140130413 -22469517 - L1P4 LINE L1 -1939 4229 2747 371 295 43 52 chrX 140130935 140131260 -22468670 + L1MC/D LINE L1 5261 5582 -2226 219 125 0 0 chrX 140131267 140131307 -22468623 + (T)n Simple_repeat Simple_repeat 1 40 0 6522 115 40 81 chrX 140131308 140132723 -22467207 - SVA Other Other -1 1385 28 381 110 28 0 chrX 140132781 140132861 -22467069 + L1P LINE L1 5243 5324 -822 271 59 98 0 chrX 140132861 140132912 -22467018 - L1P LINE L1 -2764 3382 3327 341 311 141 48 chrX 140134196 140134242 -22465688 + MIR SINE MIR 28 68 -194 2066 158 42 14 chrX 140134242 140134398 -22465532 - MLT1A1 LTR MaLR 0 365 215 327 25 0 0 chrX 140134398 140134438 -22465492 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2066 158 42 14 chrX 140134438 140134636 -22465294 - MLT1A1 LTR MaLR -150 215 1 341 311 141 48 chrX 140134636 140134795 -22465135 + MIR SINE MIR 68 252 -10 1791 158 45 0 chrX 140135701 140135993 -22463937 + AluSg SINE Alu 5 309 -1 339 254 41 33 chrX 140136397 140136519 -22463411 + MIR SINE MIR 134 256 -6 324 324 36 7 chrX 140137369 140137508 -22462422 + L3 LINE CR1 1375 1517 -60 253 168 69 0 chrX 140137550 140137597 -22462333 - MIR SINE MIR -56 152 103 21 0 0 0 chrX 140139244 140139265 -22460665 + AT_rich Low_complexity Low_complexity 1 21 0 630 277 59 10 chrX 140139653 140139855 -22460075 - MIR SINE MIR -34 228 17 191 271 0 0 chrX 140140259 140140307 -22459623 - L2 LINE L2 -2 3311 3264 889 232 6 0 chrX 140140569 140140746 -22459184 + MER45A DNA AcHobo 1 178 0 1599 127 52 0 chrX 140140925 140141177 -22458753 - AluSc SINE Alu -1 308 44 2330 91 7 0 chrX 140141177 140141473 -22458457 - AluSp SINE Alu -11 302 3 462 305 17 40 chrX 140141532 140141709 -22458221 + MIR SINE MIR 34 206 -56 189 0 0 0 chrX 140142328 140142349 -22457581 + (TTG)n Simple_repeat Simple_repeat 2 22 0 231 303 0 0 chrX 140143447 140143513 -22456417 + MIR SINE MIR 87 152 -56 985 239 31 4 chrX 140143560 140143815 -22456115 + MIR SINE MIR 1 262 0 8364 54 1 1 chrX 140145039 140146008 -22453922 - LTR5 LTR ERVK 0 969 1 518 318 42 5 chrX 140146427 140146619 -22453311 + MIR3 SINE MIR 3 201 -7 26 64 0 0 chrX 140149303 140149350 -22450580 + AT_rich Low_complexity Low_complexity 1 47 0 690 270 38 5 chrX 140149536 140149721 -22450209 - MIR SINE MIR -7 255 65 466 244 58 172 chrX 140149767 140149913 -22450017 - MIR SINE MIR 0 262 164 7689 17 1 0 chrX 140149913 140151497 -22448433 - L1PA3 LINE L1 0 6155 4564 466 244 58 172 chrX 140151497 140151641 -22448289 - MIR SINE MIR -98 164 5 21 36 0 0 chrX 140152049 140152077 -22447853 + AT_rich Low_complexity Low_complexity 1 28 0 2528 34 0 0 chrX 140152077 140152375 -22447555 - L1PA5 LINE L1 -4 6150 5853 382 254 102 0 chrX 140153200 140153318 -22446612 + MIR3 SINE MIR 43 172 -36 * 3201 281 67 47 chrX 140153299 140154071 -22445859 - L2 LINE L2 0 3313 2558 2075 97 94 29 chrX 140154071 140154413 -22445517 - THE1B LTR MaLR 0 364 1 3201 281 67 47 chrX 140154413 140155177 -22444753 - L2 LINE L2 -755 2558 1749 203 227 45 0 chrX 140156176 140156220 -22443710 + (CATG)n Simple_repeat Simple_repeat 3 48 0 1494 196 16 60 chrX 140156792 140157174 -22442756 + MLT1A1 LTR MaLR 1 365 0 181 214 18 107 chrX 140157570 140157626 -22442304 + MER5A DNA MER1_type 1 51 -138 370 345 122 18 chrX 140158474 140158890 -22441040 - L1MC/D LINE L1 -748 5398 5089 319 383 58 27 chrX 140159305 140159493 -22440437 + MIR3 SINE MIR 8 201 -7 337 381 38 31 chrX 140159495 140159655 -22440275 - L2 LINE L2 0 3272 3112 283 371 120 44 chrX 140159852 140160233 -22439697 - L2 LINE L2 -338 2976 2565 753 316 10 20 chrX 140160233 140160429 -22439501 + MER91A DNA MER1_type 2 195 -1 305 279 18 85 chrX 140160828 140160993 -22438937 - MIR SINE MIR -74 188 35 226 135 0 0 chrX 140161250 140161287 -22438643 - MLT1F LTR MaLR 0 542 506 656 313 59 77 chrX 140161311 140161691 -22438239 - L2 LINE L2 -8 3264 2879 1617 156 50 106 chrX 140161691 140161763 -22438167 - MLT2D LTR ERVL 0 414 340 465 90 0 0 chrX 140161763 140161830 -22438100 + (TG)n Simple_repeat Simple_repeat 2 68 0 1617 156 50 106 chrX 140161830 140162048 -22437882 - MLT2D LTR ERVL -74 340 153 242 28 0 28 chrX 140162048 140162084 -22437846 + (CATTA)n Simple_repeat Simple_repeat 3 37 0 1617 156 50 106 chrX 140162084 140162228 -22437702 - MLT2D LTR ERVL -261 153 3 656 313 59 77 chrX 140162228 140162809 -22437121 - L2 LINE L2 -393 2879 2327 1168 62 62 11 chrX 140162957 140163136 -22436794 + LTR7 LTR ERV1 261 448 -2 1442 89 154 0 chrX 140163146 140163392 -22436538 - LTR7 LTR ERV1 -166 284 1 2275 90 48 13 chrX 140163392 140163769 -22436161 - HERVH LTR ERV1 0 7713 7324 1324 124 18 5 chrX 140163769 140163986 -22435944 - HERVH LTR ERV1 -1894 5819 5600 4206 132 1 1 chrX 140163990 140164649 -22435281 - HERVH LTR ERV1 -2567 5146 4488 3124 117 4 8 chrX 140164651 140165155 -22434775 - HERVH LTR ERV1 -3720 3993 3492 665 143 34 20 chrX 140165145 140165292 -22434638 - HERVH LTR ERV1 -4423 3290 3142 * 1107 300 62 4 chrX 140165781 140166169 -22433761 + L2 LINE L2 2653 3062 -251 1444 146 197 0 chrX 140167672 140167987 -22431943 - L1MD3 LINE L1 0 7995 7619 632 174 0 0 chrX 140168023 140168132 -22431798 - MLT1F1 LTR MaLR -443 124 16 302 246 254 17 chrX 140168146 140168264 -22431666 - L1MD3 LINE L1 -756 7239 7094 14253 178 22 15 chrX 140168266 140170013 -22429917 - L1PB1 LINE L1 -1 6866 5133 261 0 0 0 chrX 140170013 140170042 -22429888 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 14253 178 22 15 chrX 140170042 140172263 -22427667 - L1PB1 LINE L1 -1734 5133 2929 2401 59 23 10 chrX 140172263 140172568 -22427362 - AluY SINE Alu -2 309 1 14253 178 22 15 chrX 140172568 140174627 -22425303 - L1PB1 LINE L1 -3938 2929 621 407 211 11 0 chrX 140174616 140174711 -22425219 - L1PB1 LINE L1 -6664 199 104 * 496 185 102 0 chrX 140174781 140174889 -22425041 - L1PB1 LINE L1 -6739 124 6 852 175 26 31 chrX 140174903 140175131 -22424799 - L1MD3 LINE L1 -870 7125 6899 335 377 41 0 chrX 140175148 140175294 -22424636 + L2 LINE L2 3117 3268 -4 561 296 75 5 chrX 140176137 140176348 -22423582 + MIR SINE MIR 23 247 -15 510 182 86 25 chrX 140177774 140177936 -22421994 + MIR SINE MIR 31 212 -50 491 254 37 44 chrX 140178718 140178907 -22421023 + MIR3 SINE MIR 5 186 -63 342 292 22 0 chrX 140178960 140179049 -22420881 + L2 LINE L2 3221 3311 -2 353 269 62 55 chrX 140179100 140179287 -22420643 - MIR SINE MIR -61 201 16 358 107 143 0 chrX 140179600 140179699 -22420231 + Alu SINE Alu 222 328 0 213 42 104 21 chrX 140180244 140180292 -22419638 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 244 385 9 38 chrX 140180296 140180509 -22419421 + L2 LINE L2 2552 2758 -556 428 279 32 6 chrX 140180543 140180701 -22419229 - MER103 DNA DNA -1 165 4 1136 155 39 5 chrX 140180928 140181135 -22418795 - L1MC1 LINE L1 -6 6327 6114 1259 215 87 28 chrX 140181489 140181847 -22418083 + MLT1B LTR MaLR 1 379 -11 204 387 0 0 chrX 140182176 140182251 -22417679 + L2 LINE L2 2594 2668 -646 861 217 22 6 chrX 140182297 140182477 -22417453 - MER5A DNA MER1_type -6 183 1 649 358 32 39 chrX 140182607 140183230 -22416700 - ERVL LTR ERVL -288 5197 4579 1592 326 64 30 chrX 140183325 140184287 -22415643 - ERVL LTR ERVL -1215 4439 3445 1222 217 12 4 chrX 140184292 140184545 -22415385 + LTR26 LTR ERV1 349 603 0 1619 321 70 21 chrX 140184545 140185343 -22414587 - ERVL LTR ERVL -2026 2970 2119 7471 85 3 2 chrX 140185343 140186311 -22413619 + LTR5 LTR ERVK 1 969 0 1619 321 70 21 chrX 140186311 140186440 -22413490 - ERVL LTR ERVL -2877 2119 1998 448 258 16 74 chrX 140186441 140186631 -22413299 - MLT1J LTR MaLR -332 179 1 30 27 0 0 chrX 140187005 140187042 -22412888 + AT_rich Low_complexity Low_complexity 1 37 0 1374 218 102 35 chrX 140188000 140188372 -22411558 + MLT1I LTR MaLR 4 400 -9 479 134 0 10 chrX 140188552 140188649 -22411281 + (TC)n Simple_repeat Simple_repeat 1 96 0 226 259 0 17 chrX 140188709 140188767 -22411163 - MLT1K LTR MaLR -343 245 189 219 343 0 15 chrX 140188877 140188944 -22410986 - MIR SINE MIR -122 86 21 2072 114 10 7 chrX 140189585 140189882 -22410048 + AluSx SINE Alu 1 298 -14 355 317 37 71 chrX 140190154 140190370 -22409560 + MIR3 SINE MIR 4 217 -45 401 349 144 40 chrX 140191522 140191917 -22408013 - L2 LINE L2 -1 3271 2836 245 216 116 59 chrX 140192313 140192521 -22407409 + L1M4b LINE L1 972 2328 -990 519 141 0 0 chrX 140192611 140192689 -22407241 + AluSp/q SINE Alu 202 279 -34 580 36 24 12 chrX 140192691 140192774 -22407156 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 321 100 0 0 chrX 140192774 140192824 -22407106 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 7506 20 3 0 chrX 140193580 140194671 -22405259 - L1PA3 LINE L1 0 6155 5065 4272 33 0 0 chrX 140194671 140195183 -22404747 + L1PA3 LINE L1 4561 5072 -1074 466 323 22 8 chrX 140195436 140195731 -22404199 - L1ME LINE L1 -596 5574 5266 1407 265 50 74 chrX 140195838 140196073 -22403857 + L1ME3A LINE L1 4411 4650 -1520 360 0 0 0 chrX 140196073 140196113 -22403817 + (CA)n Simple_repeat Simple_repeat 2 41 0 1407 265 50 74 chrX 140196113 140196423 -22403507 + L1ME3A LINE L1 4650 4966 -1204 527 56 0 0 chrX 140196423 140196494 -22403436 + L1PA5 LINE L1 6081 6151 -3 1407 265 50 74 chrX 140196494 140196702 -22403228 + L1ME3A LINE L1 4966 5178 -992 1560 133 0 0 chrX 140196702 140196927 -22403003 + AluSg/x SINE Alu 84 308 -4 1407 265 50 74 chrX 140196927 140196984 -22402946 + L1ME3A LINE L1 5178 5235 -935 2195 88 41 3 chrX 140196984 140197279 -22402651 - AluSp SINE Alu -7 306 1 1407 265 50 74 chrX 140197279 140197738 -22402192 + L1ME3A LINE L1 5235 5640 -530 472 225 127 55 chrX 140197738 140197974 -22401956 + MER112 DNA MER1_type 1 253 -3 1407 265 50 74 chrX 140197974 140198278 -22401652 + L1ME3A LINE L1 5640 5950 -220 27 0 0 0 chrX 140198296 140198323 -22401607 + AT_rich Low_complexity Low_complexity 1 27 0 397 244 30 60 chrX 140198591 140198759 -22401171 - L2 LINE L2 -77 3236 3074 336 250 0 12 chrX 140198824 140198904 -22401026 - L2 LINE L2 -546 2768 2690 523 323 40 46 chrX 140200827 140201130 -22398800 - L2 LINE L2 0 3313 3013 259 270 70 20 chrX 140201133 140201233 -22398697 - MIR SINE MIR -112 150 46 1101 198 62 29 chrX 140202092 140202335 -22397595 - MER45C DNA AcHobo -702 251 1 638 294 86 69 chrX 140202740 140203203 -22396727 - MLT1H LTR MaLR -2 547 77 14356 138 21 14 chrX 140203262 140205662 -22394268 + Tigger1 DNA MER2_type 1 2418 0 515 307 43 16 chrX 140205679 140205933 -22393997 - L1ME LINE L1 -459 5662 5402 678 134 55 8 chrX 140207210 140207337 -22392593 - MER45B DNA AcHobo -192 848 716 1567 329 79 59 chrX 140207447 140207491 -22392439 - MER45C DNA AcHobo -802 779 737 2662 122 21 19 chrX 140207491 140207918 -22392012 - MSTA LTR MaLR 0 428 1 1567 329 79 59 chrX 140207918 140208636 -22391294 - MER45C DNA AcHobo -844 737 2 928 210 102 22 chrX 140209473 140209794 -22390136 - L1ME2 LINE L1 -10 6223 5850 921 143 0 0 chrX 140209796 140209929 -22390001 + FLAM_C SINE Alu 1 133 -10 1734 231 83 8 chrX 140209940 140210567 -22389363 - L1ME2 LINE L1 -391 5844 5188 255 284 0 0 chrX 140210568 140210642 -22389288 - L1ME2 LINE L1 -4326 2070 1997 1494 281 29 62 chrX 140210708 140212042 -22387888 - L1ME2 LINE L1 -4392 2004 661 340 351 18 11 chrX 140212462 140212741 -22387189 - L1ME2 LINE L1 -6012 384 43 294 319 139 0 chrX 140213048 140213090 -22386840 - L2 LINE L2 0 3313 3278 222 37 0 0 chrX 140213090 140213117 -22386813 + (CA)n Simple_repeat Simple_repeat 2 28 0 294 319 139 0 chrX 140213117 140213218 -22386712 - L2 LINE L2 -35 3278 3150 389 340 130 5 chrX 140214789 140214989 -22384941 + MIR SINE MIR 34 258 -4 373 304 30 30 chrX 140214985 140215120 -22384810 + L2 LINE L2 3179 3313 0 * 328 331 31 38 chrX 140216126 140216286 -22383644 + MIR SINE MIR 3 161 -101 26 0 0 0 chrX 140216416 140216442 -22383488 + AT_rich Low_complexity Low_complexity 1 26 0 1026 39 0 0 chrX 140216530 140216660 -22383270 - L1PA4 LINE L1 0 6155 6026 2486 195 34 9 chrX 140217210 140217763 -22382167 - L1MB7 LINE L1 -9 6175 5609 2705 200 103 44 chrX 140217764 140218233 -22381697 - L1MB7 LINE L1 -855 5291 4756 2153 123 0 11 chrX 140218233 140218583 -22381347 + L1PA13 LINE L1 5815 6160 -3 2705 200 103 44 chrX 140218583 140218888 -22381042 - L1MB7 LINE L1 -1390 4756 4471 411 316 89 11 chrX 140219043 140219233 -22380697 + MIR SINE MIR 48 252 -10 1014 229 41 0 chrX 140219814 140220032 -22379898 + MER76 LTR ERV 3 229 -459 1602 102 4 8 chrX 140220032 140220276 -22379654 + L1MA3 LINE L1 5842 6084 -221 1489 259 53 31 chrX 140220277 140220728 -22379202 + MER76 LTR ERV 228 688 0 395 230 35 0 chrX 140221599 140221686 -22378244 + MIR3 SINE MIR 116 205 -3 5137 149 31 70 chrX 140221687 140222963 -22376967 - L1MA10 LINE L1 -3 6331 5085 2176 112 7 10 chrX 140223006 140223302 -22376628 + AluSq SINE Alu 2 296 -17 1228 296 17 0 chrX 140223382 140223791 -22376139 + L1M4c LINE L1 2077 2540 -4956 1945 133 21 56 chrX 140223792 140224169 -22375761 + THE1B LTR MaLR 1 364 0 11171 102 13 1 chrX 140224169 140225731 -22374199 + THE1B-int LTR MaLR 1 1580 0 2472 239 89 43 chrX 140225762 140226947 -22372983 + L1M4c LINE L1 2429 3669 -3898 2460 132 0 3 chrX 140227077 140227440 -22372490 - THE1B LTR MaLR -2 362 1 395 337 54 18 chrX 140227574 140227740 -22372190 - MIR SINE MIR -90 172 1 29 0 0 0 chrX 140228970 140228999 -22370931 + AT_rich Low_complexity Low_complexity 1 29 0 180 375 66 22 chrX 140229453 140229589 -22370341 - L2 LINE L2 -39 3233 3092 210 370 0 22 chrX 140229654 140229746 -22370184 - L2 LINE L2 -218 3054 2965 369 272 29 100 chrX 140230122 140230361 -22369569 - MIR SINE MIR -38 224 3 1383 262 48 24 chrX 140230554 140231016 -22368914 + LTR33 LTR ERVL 47 519 -2 555 56 0 0 chrX 140231117 140231188 -22368742 + (TG)n Simple_repeat Simple_repeat 2 72 0 1431 174 156 9 chrX 140231188 140231516 -22368414 + MSTA LTR MaLR 53 428 0 349 62 0 0 chrX 140231516 140231564 -22368366 - L1M3 LINE L1 -416 5752 5705 1428 168 26 38 chrX 140231564 140231893 -22368037 + L1MA9 LINE L1 5967 6302 -10 473 276 119 24 chrX 140231913 140231937 -22367993 + L2 LINE L2 3083 3103 -210 1468 201 62 7 chrX 140231937 140232105 -22367825 - AluJo SINE Alu -8 304 112 248 0 31 0 chrX 140232105 140232137 -22367793 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1468 201 62 7 chrX 140232137 140232256 -22367674 - AluJo SINE Alu -200 112 1 473 276 119 24 chrX 140232256 140232441 -22367489 + L2 LINE L2 3103 3312 -1 703 303 32 5 chrX 140232478 140232699 -22367231 + MIR SINE MIR 36 262 0 273 57 0 0 chrX 140232948 140232983 -22366947 + (CA)n Simple_repeat Simple_repeat 2 36 0 5904 112 8 0 chrX 140233192 140234324 -22365606 - L1PA13 LINE L1 -2 6161 5033 556 347 49 51 chrX 140234494 140234944 -22364986 + L1PA16 LINE L1 788 1236 -6338 12889 229 26 10 chrX 140235631 140240870 -22359060 + L1PA16 LINE L1 2182 7499 -105 275 350 102 7 chrX 140241977 140242114 -22357816 - L2 LINE L2 -8 3264 3115 203 267 153 61 chrX 140242174 140242305 -22357625 - L2 LINE L2 -4 3309 3167 328 272 149 26 chrX 140242395 140242509 -22357421 - L2 LINE L2 0 3272 3145 21 57 0 0 chrX 140242925 140242960 -22356970 + AT_rich Low_complexity Low_complexity 1 35 0 2106 123 0 0 chrX 140243540 140243825 -22356105 + AluSx SINE Alu 25 309 -3 989 253 4 9 chrX 140243964 140244189 -22355741 - MER58A DNA MER1_type 0 224 1 23 0 0 0 chrX 140244400 140244423 -22355507 + AT_rich Low_complexity Low_complexity 1 23 0 6829 51 17 9 chrX 140244466 140245942 -22353988 + L1PA7 LINE L1 4648 6149 -5 332 231 91 77 chrX 140246651 140246872 -22353058 - MLT1H LTR MaLR -5 550 327 770 351 39 7 chrX 140246923 140247339 -22352591 + LTR16A LTR ERVL 16 444 -6 341 302 47 20 chrX 140247346 140247495 -22352435 - MLT1H LTR MaLR -249 300 148 706 182 8 8 chrX 140247549 140247670 -22352260 - FLAM_C SINE Alu -22 121 1 1709 170 14 31 chrX 140247689 140247870 -22352060 - AluJo SINE Alu -23 289 113 2194 165 53 15 chrX 140247870 140248282 -22351648 + MSTA LTR MaLR 1 428 0 1709 170 14 31 chrX 140248282 140248394 -22351536 - AluJo SINE Alu -199 113 1 404 252 52 17 chrX 140248437 140248552 -22351378 - MIR SINE MIR -26 236 118 216 184 0 0 chrX 140251903 140251952 -22347978 + (TAG)n Simple_repeat Simple_repeat 1 49 0 715 299 32 5 chrX 140251952 140252173 -22347757 - MIR SINE MIR 0 262 36 449 295 114 19 chrX 140252210 140252395 -22347535 - L2 LINE L2 -1 3312 3103 1459 204 62 7 chrX 140252395 140252514 -22347416 + AluJo SINE Alu 1 112 -200 272 27 27 0 chrX 140252514 140252551 -22347379 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 1459 204 62 7 chrX 140252551 140252720 -22347210 + AluJo SINE Alu 112 305 -7 449 295 114 19 chrX 140252720 140252744 -22347186 - L2 LINE L2 -210 3103 3083 1419 163 36 39 chrX 140252764 140253101 -22346829 - L1MA9 LINE L1 -10 6302 5967 310 0 0 0 chrX 140253101 140253138 -22346792 + L1MA8 LINE L1 5716 5752 -416 1476 175 142 9 chrX 140253138 140253470 -22346460 - MSTA LTR MaLR 0 428 53 764 152 0 14 chrX 140253494 140253639 -22346291 + L1MA8 LINE L1 5783 5925 -366 529 318 104 34 chrX 140253640 140254064 -22345866 - L2 LINE L2 -233 3080 2624 254 227 13 0 chrX 140254267 140254342 -22345588 + GA-rich Low_complexity Low_complexity 5 80 0 1011 236 8 37 chrX 140255306 140255676 -22344254 - MLT2D LTR ERVL 0 414 1 851 306 18 62 chrX 140256151 140256434 -22343496 - L2 LINE L2 -1 3312 3053 816 220 0 6 chrX 140256434 140256593 -22343337 - FRAM SINE Alu -8 158 1 851 306 18 62 chrX 140256593 140256743 -22343187 - L2 LINE L2 -260 3053 2898 197 314 216 26 chrX 140257216 140257369 -22342561 - L3 LINE CR1 -7 1570 1389 407 332 16 21 chrX 140257421 140257608 -22342322 - LTR67 LTR ERVL -7 550 365 856 311 146 62 chrX 140257889 140258200 -22341730 - L3 LINE CR1 -333 1244 961 2318 90 7 3 chrX 140258200 140258510 -22341420 - AluSp SINE Alu -2 311 1 856 311 146 62 chrX 140258510 140258857 -22341073 - L3 LINE CR1 -616 961 645 351 0 0 0 chrX 140258857 140258896 -22341034 + (CA)n Simple_repeat Simple_repeat 2 40 0 856 311 146 62 chrX 140258896 140258954 -22340976 - L3 LINE CR1 -932 645 593 2557 142 26 5 chrX 140258954 140259370 -22340560 - MSTB LTR MaLR -1 425 1 856 311 146 62 chrX 140259370 140259432 -22340498 - L3 LINE CR1 -984 593 398 198 367 128 15 chrX 140259525 140259721 -22340209 + L2 LINE L2 2425 2642 -672 291 281 50 0 chrX 140260652 140260773 -22339157 - L1ME4a LINE L1 -3 6118 5992 24 0 0 0 chrX 140260787 140260811 -22339119 + AT_rich Low_complexity Low_complexity 1 24 0 221 300 0 0 chrX 140261208 140261258 -22338672 + MIR SINE MIR 33 82 -126 10940 168 26 12 chrX 140262554 140264581 -22335349 + L1 LINE L1 13 2066 -5499 23432 37 1 0 chrX 140264694 140267721 -22332209 + L1P LINE L1 2362 5391 -755 7444 147 73 12 chrX 140267840 140270024 -22329906 - L1PBa LINE L1 -4083 2780 319 5062 203 15 5 chrX 140270135 140271339 -22328591 + L1 LINE L1 3998 5213 -2352 22 0 0 0 chrX 140271345 140271367 -22328563 + AT_rich Low_complexity Low_complexity 1 22 0 5133 145 17 16 chrX 140271398 140272067 -22327863 - L1PA15 LINE L1 -7 6158 5486 2266 111 7 3 chrX 140272067 140272374 -22327556 - AluSc SINE Alu -1 308 1 5133 145 17 16 chrX 140272374 140272776 -22327154 - L1PA15 LINE L1 -679 5486 5086 1897 125 0 0 chrX 140272781 140273068 -22326862 + THE1B LTR MaLR 1 287 -77 1801 147 3 3 chrX 140273172 140273486 -22326444 - L1MA7 LINE L1 -290 6001 5688 712 189 179 19 chrX 140273484 140273696 -22326234 - L1M4b LINE L1 -5577 1282 1037 * 1468 200 133 87 chrX 140274297 140275077 -22324853 - LTR1B LTR ERV1 0 1020 29 333 332 47 31 chrX 140275083 140275276 -22324654 + LTR33 LTR ERVL 2 197 -324 472 332 87 21 chrX 140276149 140276390 -22323540 - MIR SINE MIR -3 259 3 199 333 0 0 chrX 140278165 140278228 -22321702 - MIR3 SINE MIR -53 155 93 367 207 44 74 chrX 140278535 140278670 -22321260 - MIR SINE MIR -60 202 72 201 390 72 40 chrX 140278700 140278946 -22320984 + L2 LINE L2 2438 2695 -619 2106 101 7 3 chrX 140278946 140279234 -22320696 + AluSc SINE Alu 1 289 -20 201 390 72 40 chrX 140279234 140279264 -22320666 + L2 LINE L2 2695 2723 -591 2004 134 137 11 chrX 140279656 140280036 -22319894 + MSTA LTR MaLR 1 428 0 4014 173 26 8 chrX 140280036 140280758 -22319172 + MSTA-int LTR MaLR 1 735 -916 336 314 86 40 chrX 140281274 140281599 -22318331 + L1ME LINE L1 4399 4738 -1408 556 287 82 28 chrX 140281940 140282275 -22317655 + L1ME LINE L1 5373 5731 -390 191 236 0 55 chrX 140282419 140282474 -22317456 + MER5B DNA MER1_type 4 55 -123 2977 309 35 16 chrX 140282559 140283606 -22316324 - HERV16 LTR ERVL -3649 1347 281 259 195 0 52 chrX 140283617 140283694 -22316236 + L1M4 LINE L1 5144 5216 -930 * 3285 248 85 8 chrX 140283669 140284839 -22315091 + L1M4 LINE L1 2698 4006 -2140 422 288 73 75 chrX 140285030 140285510 -22314420 - HAL1 LINE L1 -2018 489 11 3164 242 56 18 chrX 140285524 140287022 -22312908 - L1ME1 LINE L1 -15 6151 4579 2084 118 27 30 chrX 140287022 140287387 -22312543 - THE1B LTR MaLR 0 364 1 3164 242 56 18 chrX 140287387 140287651 -22312279 - L1ME1 LINE L1 -1587 4579 4327 407 249 65 80 chrX 140288149 140288350 -22311580 - MLT1H LTR MaLR -2 547 350 560 270 39 77 chrX 140288467 140288700 -22311230 - MLT1H LTR MaLR -209 340 117 23 33 0 0 chrX 140289067 140289097 -22310833 + AT_rich Low_complexity Low_complexity 1 30 0 941 265 37 8 chrX 140289926 140290171 -22309759 - MIR SINE MIR -1 261 10 201 347 52 52 chrX 140290277 140290548 -22309382 - L2 LINE L2 -338 2976 2706 374 307 34 126 chrX 140291018 140291399 -22308531 + L2 LINE L2 2927 3272 0 2436 123 7 62 chrX 140291643 140291797 -22308133 - MER44D DNA MER2_type -1883 604 613 885 81 8 8 chrX 140291797 140291921 -22308009 - L1MA2 LINE L1 -13 6291 6168 2436 123 7 62 chrX 140291921 140292187 -22307743 - MER44D DNA MER2_type -1873 614 335 1326 308 27 18 chrX 140293132 140293571 -22306359 - LTR16A LTR ERVL -7 443 1 354 310 100 0 chrX 140293571 140293671 -22306259 - L2 LINE L2 -41 3231 3122 552 212 67 57 chrX 140293724 140293917 -22306013 - MIR SINE MIR -38 224 30 211 292 18 35 chrX 140294016 140294129 -22305801 + L2 LINE L2 2693 2803 -511 365 368 58 25 chrX 140294267 140294666 -22305264 + L2 LINE L2 2456 2867 -447 2158 156 28 15 chrX 140295440 140295967 -22303963 - L1MA7 LINE L1 0 6291 5652 462 273 86 29 chrX 140296072 140296281 -22303649 - L2 LINE L2 -842 2472 2252 207 351 0 35 chrX 140297059 140297173 -22302757 - MIR SINE MIR -40 222 113 968 241 66 16 chrX 140297592 140297970 -22301960 + L1MB7 LINE L1 4109 4505 -1641 1455 208 71 51 chrX 140298010 140298463 -22301467 + MLT1C LTR MaLR 6 467 0 1081 181 57 12 chrX 140298463 140298816 -22301114 + L1ME LINE L1 1518 1973 -4453 931 231 113 20 chrX 140298818 140299363 -22300567 + L1ME LINE L1 2054 2666 -3941 1171 234 11 85 chrX 140299364 140299822 -22300108 + L1ME LINE L1 2810 3233 -3193 5965 281 58 44 chrX 140299882 140302165 -22297765 + L1P LINE L1 1 2322 -3824 197 65 32 0 chrX 140302165 140302196 -22297734 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5965 281 58 44 chrX 140302196 140302343 -22297587 + L1P LINE L1 2322 2465 -3681 372 88 0 0 chrX 140302382 140302439 -22297491 + L1P LINE L1 2395 2451 -3695 1598 133 0 0 chrX 140302466 140302707 -22297223 + L1PA15 LINE L1 5918 6158 -7 3714 225 22 2 chrX 140302715 140303543 -22296387 + L1MB7 LINE L1 5318 6161 -23 395 209 27 68 chrX 140303597 140303745 -22296185 - Charlie7 DNA MER1_type -6 2606 2465 447 302 249 4 chrX 140303831 140304096 -22295834 - L2 LINE L2 -679 2635 2306 778 302 93 22 chrX 140304105 140304360 -22295570 - L2 LINE L2 -1151 2163 1873 2255 121 0 0 chrX 140304360 140304665 -22295265 + AluSx SINE Alu 1 305 -7 778 302 93 22 chrX 140304665 140304773 -22295157 - L2 LINE L2 -1441 1873 1774 840 191 12 0 chrX 140304794 140304956 -22294974 - L1M4 LINE L1 -2310 3836 3673 794 124 7 29 chrX 140304953 140305090 -22294840 - L1M3 LINE L1 -571 5597 5464 * 1456 165 54 111 chrX 140305091 140305478 -22294452 + MLT1A1 LTR MaLR 1 365 0 1265 209 66 116 chrX 140305545 140305720 -22294210 + MLT1F1 LTR MaLR 10 192 -375 2059 144 3 6 chrX 140305720 140306033 -22293897 - AluSx SINE Alu 0 312 1 1265 209 66 116 chrX 140306033 140306444 -22293486 + MLT1F1 LTR MaLR 192 565 -2 460 268 237 13 chrX 140306450 140306767 -22293163 - L2 LINE L2 -1565 1749 1362 2361 78 0 0 chrX 140306863 140307158 -22292772 + AluSg SINE Alu 1 295 -15 386 255 54 11 chrX 140308422 140308651 -22291279 + MLT1I LTR MaLR 1 264 -145 245 333 122 34 chrX 140309124 140309325 -22290605 + L1ME LINE L1 3653 3835 -2591 2581 113 0 0 chrX 140309325 140309680 -22290250 - THE1A LTR MaLR 0 355 1 245 333 122 34 chrX 140309680 140309947 -22289983 + L1ME LINE L1 3835 4162 -2264 239 256 45 91 chrX 140309949 140310043 -22289887 + L1ME LINE L1 4219 4303 -2123 2194 101 0 0 chrX 140310043 140310340 -22289590 - AluSq SINE Alu -16 297 1 239 256 45 91 chrX 140310340 140310421 -22289509 + L1ME LINE L1 4303 4386 -2040 21 57 0 0 chrX 140310912 140310947 -22288983 + AT_rich Low_complexity Low_complexity 1 35 0 661 256 137 48 chrX 140311078 140311953 -22287977 + L1ME LINE L1 4397 5478 -948 309 263 81 10 chrX 140312009 140312108 -22287822 - MER20B DNA MER1_type 0 783 678 349 270 0 0 chrX 140312108 140312197 -22287733 + L1 LINE L1 2387 2475 -3671 9923 184 31 42 chrX 140312308 140314651 -22285279 + L1 LINE L1 2387 4703 -1443 324 240 158 53 chrX 140314842 140315088 -22284842 + L1ME LINE L1 5846 6117 -284 346 246 30 168 chrX 140315385 140315588 -22284342 + MER5B DNA MER1_type 1 175 -3 720 298 123 86 chrX 140315851 140316536 -22283394 + L3 LINE CR1 861 1570 -7 186 71 0 0 chrX 140316715 140316743 -22283187 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 947 242 199 51 chrX 140316821 140317350 -22282580 + MLT1L LTR MaLR 1 607 -8 324 175 0 0 chrX 140317505 140317568 -22282362 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 440 315 16 49 chrX 140318548 140318732 -22281198 + MIR SINE MIR 35 212 -50 2278 88 3 0 chrX 140318989 140319284 -22280646 + AluSg SINE Alu 1 296 -14 199 396 9 0 chrX 140320119 140320225 -22279705 + MIR3 SINE MIR 77 183 -25 198 0 0 0 chrX 140321041 140321063 -22278867 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2186 105 3 13 chrX 140321460 140321773 -22278157 + AluSx SINE Alu 1 310 -2 24 0 0 0 chrX 140321940 140321964 -22277966 + AT_rich Low_complexity Low_complexity 1 24 0 358 218 32 24 chrX 140321972 140322096 -22277834 - L1ME4a LINE L1 -3 6118 5994 3031 123 2 0 chrX 140322117 140322574 -22277356 - L1PA13 LINE L1 -11 6152 5695 324 248 98 39 chrX 140322578 140322731 -22277199 + L1MEc LINE L1 693 854 -5542 2170 113 3 0 chrX 140322737 140323037 -22276893 + AluSx SINE Alu 1 301 -11 734 110 27 20 chrX 140323040 140323186 -22276744 + GA-rich Low_complexity Low_complexity 4 150 0 964 258 77 74 chrX 140323308 140323652 -22276278 - HAL1 LINE L1 -921 1586 1244 5614 71 16 0 chrX 140323652 140324389 -22275541 - L1PA10 LINE L1 -16 6152 5404 964 258 77 74 chrX 140324389 140324731 -22275199 - HAL1 LINE L1 -1263 1244 898 1349 282 71 14 chrX 140325055 140325606 -22274324 + L1MC4 LINE L1 7187 7900 -142 2611 265 61 28 chrX 140325674 140326996 -22272934 + L1MEc LINE L1 2084 3411 -2804 3009 74 45 2 chrX 140327028 140327449 -22272481 - HSMAR1 DNA Mariner -848 439 1 555 304 69 5 chrX 140328116 140328320 -22271610 - MIR SINE MIR -12 250 34 21 0 0 0 chrX 140328443 140328464 -22271466 + AT_rich Low_complexity Low_complexity 1 21 0 237 42 42 21 chrX 140328915 140328963 -22270967 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 25 51 0 0 chrX 140328969 140329008 -22270922 + AT_rich Low_complexity Low_complexity 1 39 0 194 380 0 0 chrX 140329319 140329390 -22270540 + L2 LINE L2 2286 2356 -958 2020 220 63 35 chrX 140330113 140330685 -22269245 + L1ME2 LINE L1 5431 6018 -146 448 222 19 43 chrX 140330765 140330927 -22269003 + L1MC5 LINE L1 7774 7931 -30 394 280 48 18 chrX 140331108 140331276 -22268654 + L1ME4a LINE L1 5946 6118 -3 295 328 86 17 chrX 140332040 140332156 -22267774 + L2 LINE L2 3137 3260 -12 462 307 29 7 chrX 140332217 140332354 -22267576 - L2 LINE L2 -16 3297 3158 973 350 12 16 chrX 140333132 140333560 -22266370 + L3 LINE CR1 460 885 -692 31 26 0 0 chrX 140334420 140334458 -22265472 + AT_rich Low_complexity Low_complexity 1 38 0 753 309 99 57 chrX 140334458 140334982 -22264948 + L3 LINE CR1 1015 1560 -17 215 302 0 0 chrX 140335022 140335085 -22264845 + L2 LINE L2 2477 2539 -775 1036 227 75 117 chrX 140335175 140335739 -22264191 + MLT1H LTR MaLR 8 547 -2 965 276 82 38 chrX 140336382 140336857 -22263073 + Charlie7 DNA MER1_type 83 578 -2034 536 272 71 8 chrX 140336896 140337135 -22262795 + Charlie7 DNA MER1_type 769 1022 -1590 834 207 55 108 chrX 140337143 140337486 -22262444 + L1ME1 LINE L1 5837 6161 -5 30 27 0 0 chrX 140337487 140337524 -22262406 + AT_rich Low_complexity Low_complexity 1 37 0 203 250 48 77 chrX 140337539 140337643 -22262287 - L2 LINE L2 -41 3272 3172 414 328 28 22 chrX 140339735 140339915 -22260015 - MIR SINE MIR -50 212 32 317 346 50 13 chrX 140341977 140342136 -22257794 - L2 LINE L2 -571 2743 2579 303 320 47 23 chrX 140343764 140343892 -22256038 - MIR3 SINE MIR -1 207 77 3875 18 0 2 chrX 140344641 140345092 -22254838 + L1PA2 LINE L1 5706 6155 0 1600 199 24 58 chrX 140345695 140346077 -22253853 + MLT1D LTR MaLR 1 369 -136 414 288 63 48 chrX 140346084 140346435 -22253495 + L1ME3A LINE L1 4946 5301 -845 576 298 25 13 chrX 140346556 140346714 -22253216 - LTR33 LTR ERVL -343 178 19 508 250 220 20 chrX 140346729 140347129 -22252801 + L1ME3A LINE L1 5477 5956 -214 188 194 0 97 chrX 140347417 140347489 -22252441 - L2 LINE L2 -182 3090 3026 237 393 37 9 chrX 140347925 140348032 -22251898 - MIR SINE MIR -69 139 30 914 114 0 0 chrX 140348450 140348582 -22251348 + AluSg/x SINE Alu 172 303 -9 1678 100 0 4 chrX 140350022 140350252 -22249678 - AluY SINE Alu -1 310 82 1345 218 17 31 chrX 140350311 140350664 -22249266 - L1ME2 LINE L1 -40 6124 5777 1727 242 77 48 chrX 140350674 140350951 -22248979 - L1ME2 LINE L1 -1130 5016 4749 972 158 6 0 chrX 140350951 140351116 -22248814 + L1PB3 LINE L1 5987 6152 -2 1727 242 77 48 chrX 140351116 140351659 -22248271 - L1ME2 LINE L1 -1397 4749 4172 4395 183 24 19 chrX 140351663 140352090 -22247840 - L1MA4A LINE L1 -24 6981 6557 2961 90 19 57 chrX 140352090 140352568 -22247362 - L1PA10 LINE L1 0 6168 5709 4395 183 24 19 chrX 140352568 140353859 -22246071 - L1MA4A LINE L1 -448 6557 5194 1940 209 0 12 chrX 140353841 140354258 -22245672 - L1MA4A LINE L1 -3329 3519 3108 * 3009 285 26 78 chrX 140354260 140355484 -22244446 - L1MA4A LINE L1 -5498 1351 195 2022 120 175 6 chrX 140355484 140355850 -22244080 - MSTA LTR MaLR 0 428 1 3009 285 26 78 chrX 140355850 140355905 -22244025 - L1MA4A LINE L1 -6654 195 139 1311 264 109 38 chrX 140355900 140356360 -22243570 - L1M4 LINE L1 -1955 4191 3666 * 1585 172 30 24 chrX 140356360 140356657 -22243273 - AluJb SINE Alu -13 299 1 1311 264 109 38 chrX 140356657 140356874 -22243056 - L1M4 LINE L1 -2480 3666 3466 8445 88 6 8 chrX 140357496 140357508 -22242422 + L1M4 LINE L1 4334 4345 -1829 4243 29 6 2 chrX 140357508 140358023 -22241907 - L1PA4 LINE L1 -4 6151 5635 8445 88 6 8 chrX 140358023 140359408 -22240522 + L1M4 LINE L1 4345 5724 -450 1264 244 83 14 chrX 140359378 140359886 -22240044 - L1M4 LINE L1 -2771 3375 2833 * 538 319 52 8 chrX 140360848 140361096 -22238834 - L2 LINE L2 -218 3095 2837 816 332 98 29 chrX 140361773 140362327 -22237603 - L2 LINE L2 -693 2621 2030 247 258 48 0 chrX 140363586 140363648 -22236282 + L3b LINE CR1 1281 1345 -238 209 300 25 25 chrX 140363703 140363783 -22236147 + L2 LINE L2 2677 2756 -558 1058 248 6 53 chrX 140364113 140364436 -22235494 + MER46C DNA MER2_type 31 338 0 227 392 89 0 chrX 140364589 140364747 -22235183 + LTR67 LTR ERVL 122 293 -264 289 281 8 50 chrX 140364821 140364942 -22234988 + LTR67 LTR ERVL 428 543 -14 703 339 134 16 chrX 140365066 140365685 -22234245 - L2 LINE L2 -575 2739 2048 183 373 119 32 chrX 140365684 140365810 -22234120 - L2 LINE L2 -46 3226 3090 * 28 0 0 0 chrX 140366197 140366225 -22233705 + AT_rich Low_complexity Low_complexity 1 28 0 294 328 56 14 chrX 140366369 140366529 -22233401 + MIR3 SINE MIR 34 168 -40 350 325 41 0 chrX 140366792 140366960 -22232970 + MLT1J2 LTR MaLR 280 407 -2 1978 160 34 8 chrX 140366970 140367326 -22232604 - MLT1A1 LTR MaLR 0 365 1 185 329 78 75 chrX 140368039 140368450 -22231480 - L2 LINE L2 -655 2659 2248 224 283 19 0 chrX 140368581 140368634 -22231296 - L2 LINE L2 -3 3269 3216 193 273 102 34 chrX 140370162 140370250 -22229680 + L3 LINE CR1 618 711 -866 266 259 65 46 chrX 140371075 140371183 -22228747 + L3 LINE CR1 336 445 -1132 847 70 9 0 chrX 140371191 140371306 -22228624 - L1P LINE L1 -2313 3833 3718 839 235 42 8 chrX 140371406 140371644 -22228286 - L1M4 LINE L1 -3287 3357 3112 273 218 46 0 chrX 140371638 140371725 -22228205 - L1M4 LINE L1 -5200 1346 1256 * 1819 143 48 7 chrX 140371734 140372028 -22227902 - AluSg SINE Alu -4 306 1 1407 102 5 0 chrX 140372047 140372244 -22227686 - AluSp SINE Alu 0 313 116 4464 232 33 39 chrX 140372248 140373459 -22226471 - L1M4 LINE L1 -5338 1204 1 570 332 153 7 chrX 140373479 140373786 -22226144 + L2 LINE L2 2962 3313 0 35 24 0 0 chrX 140373842 140373884 -22226046 + AT_rich Low_complexity Low_complexity 1 42 0 502 310 70 31 chrX 140374022 140374438 -22225492 - L1ME LINE L1 -330 5791 5360 21 36 0 0 chrX 140374656 140374684 -22225246 + AT_rich Low_complexity Low_complexity 1 28 0 2278 310 59 34 chrX 140374859 140376144 -22223786 - L2 LINE L2 -1 3312 1983 634 339 20 20 chrX 140376215 140376469 -22223461 - MIR SINE MIR -7 255 2 499 236 27 14 chrX 140376711 140376859 -22223071 + L1ME1 LINE L1 4611 4760 -1386 1857 230 86 15 chrX 140376959 140377554 -22222376 + L1ME1 LINE L1 4755 5391 -755 * 2596 95 29 14 chrX 140377541 140378351 -22221579 + L1PA10 LINE L1 5326 6189 0 219 71 0 48 chrX 140378351 140378393 -22221537 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 1837 221 111 51 chrX 140378393 140378425 -22221505 + L1ME1 LINE L1 5387 5416 -918 2029 140 7 0 chrX 140378425 140378718 -22221212 + AluSx SINE Alu 1 295 -17 1837 221 111 51 chrX 140378718 140379432 -22220498 + L1ME1 LINE L1 5416 6334 0 351 309 44 11 chrX 140379518 140379731 -22220199 - L1M4 LINE L1 -2309 3837 3618 22 35 0 0 chrX 140380456 140380485 -22219445 + AT_rich Low_complexity Low_complexity 1 29 0 900 311 43 22 chrX 140380755 140381125 -22218805 - MLT1K LTR MaLR -70 518 141 1349 147 30 26 chrX 140381349 140381581 -22218349 - AluSg/x SINE Alu -7 305 73 597 282 69 14 chrX 140382744 140382984 -22216946 + MLT1J LTR MaLR 247 597 -18 1627 124 88 33 chrX 140383101 140383375 -22216555 + AluSx SINE Alu 1 289 -23 213 177 146 38 chrX 140384211 140384290 -22215640 + MIR SINE MIR 71 157 -51 5031 63 0 0 chrX 140384341 140384972 -22214958 - L1PA7 LINE L1 -8 6146 5516 25 31 0 0 chrX 140385337 140385369 -22214561 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chrX 140385585 140385622 -22214308 + AT_rich Low_complexity Low_complexity 1 37 0 273 243 0 68 chrX 140385622 140385725 -22214205 - MIR SINE MIR -56 206 111 3881 206 48 20 chrX 140385996 140386232 -22213698 - L1MB7 LINE L1 -54 6199 5971 2056 104 3 17 chrX 140386232 140386558 -22213372 + AluSp SINE Alu 1 322 0 3881 206 48 20 chrX 140386558 140387616 -22212314 - L1MB7 LINE L1 -282 5971 4862 4599 120 11 15 chrX 140387619 140388342 -22211588 - L1PA13 LINE L1 -2 6161 5442 695 25 0 0 chrX 140388342 140388423 -22211507 + MER51B LTR ERV1 1 81 -296 416 91 0 0 chrX 140388431 140388486 -22211444 + MER51A LTR ERV1 580 634 0 5874 162 10 5 chrX 140388488 140389670 -22210260 - L1PA13 LINE L1 -718 5443 4261 544 203 250 0 chrX 140389673 140389865 -22210065 - L1MB7 LINE L1 -1345 4870 4631 1472 217 57 3 chrX 140389866 140390184 -22209746 + MLT2C1 LTR ERVL 1 335 -62 1586 195 7 3 chrX 140390190 140390492 -22209438 - AluJo SINE Alu -9 303 1 200 224 15 0 chrX 140390516 140390583 -22209347 + CT-rich Low_complexity Low_complexity 1 68 0 2808 239 35 6 chrX 140390619 140391479 -22208451 - L1MB7 LINE L1 -1581 4634 3750 1091 229 27 16 chrX 140391459 140391799 -22208131 - L1MB7 LINE L1 -977 5238 4903 * 610 161 84 0 chrX 140391799 140391942 -22207988 - L1MB4 LINE L1 -1 6179 6025 1091 229 27 16 chrX 140391942 140392028 -22207902 - L1MB7 LINE L1 -1312 4903 2206 2426 259 40 33 chrX 140392030 140393051 -22206879 - L1M4c LINE L1 -4129 2696 1522 1292 260 35 49 chrX 140393051 140393563 -22206367 + MLT1D LTR MaLR 1 505 0 2426 259 40 33 chrX 140393563 140393936 -22205994 - L1M4c LINE L1 -5303 1522 1153 2462 216 35 32 chrX 140393939 140394770 -22205160 + MER73 LTR ERVL 3 644 0 1506 233 36 30 chrX 140394773 140395760 -22204170 - L1M4c LINE L1 -5397 1145 14 3075 232 45 32 chrX 140395767 140396735 -22203195 + L1MD2 LINE L1 5205 6349 -10 1789 128 91 26 chrX 140397041 140397393 -22202537 - THE1C LTR MaLR 0 375 1 6998 120 2 19 chrX 140397393 140398438 -22201492 - THE1C-int LTR MaLR 0 1580 554 338 259 23 23 chrX 140398434 140398565 -22201365 + L1ME2 LINE L1 6027 6157 -7 * 1412 173 4 16 chrX 140398997 140399251 -22200679 + AluJo SINE Alu 1 251 -61 1869 243 57 20 chrX 140399351 140400247 -22199683 + L1MA9 LINE L1 1668 2655 -4841 243 0 0 0 chrX 140400247 140400274 -22199656 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1869 243 57 20 chrX 140400274 140400359 -22199571 + L1MA9 LINE L1 2655 2735 -4761 1031 66 7 0 chrX 140400367 140400503 -22199427 + L1PA7 LINE L1 6017 6153 -1 6390 86 11 3 chrX 140400510 140401487 -22198443 + L1PA10 LINE L1 5178 6164 -4 8283 210 34 16 chrX 140401491 140403753 -22196177 + L1MA9 LINE L1 3412 5715 -1850 1508 169 82 5 chrX 140403759 140404127 -22195803 - L1 LINE L1 -1471 4675 4280 1456 160 7 0 chrX 140404147 140404416 -22195514 - L1 LINE L1 -2339 3807 3537 * 3648 198 35 21 chrX 140404404 140404489 -22195441 + L1MA9 LINE L1 5699 5781 -1784 2179 101 0 14 chrX 140404489 140404804 -22195126 + AluSx SINE Alu 1 311 0 3648 198 35 21 chrX 140404804 140405591 -22194339 + L1MA9 LINE L1 5781 6585 -980 735 148 0 18 chrX 140405593 140405850 -22194080 + AluJb SINE Alu 1 301 -11 3154 152 67 38 chrX 140405853 140406454 -22193476 + L1MA9 LINE L1 6584 7218 -513 464 27 54 0 chrX 140406454 140406528 -22193402 + (TA)n Simple_repeat Simple_repeat 2 79 0 3154 152 67 38 chrX 140406528 140406750 -22193180 + L1MA9 LINE L1 7218 7432 -299 22 0 0 0 chrX 140406750 140406772 -22193158 + AT_rich Low_complexity Low_complexity 1 22 0 264 77 0 0 chrX 140407707 140407746 -22192184 + (CA)n Simple_repeat Simple_repeat 2 40 0 543 56 0 0 chrX 140408582 140408653 -22191277 + (TG)n Simple_repeat Simple_repeat 1 71 0 401 242 125 8 chrX 140409379 140409507 -22190423 + MLT1-int LTR MaLR 1 143 -1228 325 215 65 11 chrX 140410274 140410366 -22189564 + MER103 DNA DNA 42 138 -28 1203 157 108 31 chrX 140410366 140410652 -22189278 + THE1C LTR MaLR 1 308 -67 314 85 21 21 chrX 140410752 140410799 -22189131 + THE1C LTR MaLR 328 374 -1 924 178 44 11 chrX 140410799 140410979 -22188951 + MER5A DNA MER1_type 1 186 -3 21 36 0 0 chrX 140411189 140411217 -22188713 + AT_rich Low_complexity Low_complexity 1 28 0 1901 148 60 20 chrX 140411850 140412202 -22187728 - MER47A DNA MER2_type 0 366 1 427 293 9 0 chrX 140412537 140412653 -22187277 + L2 LINE L2 3191 3307 -6 183 80 0 0 chrX 140413259 140413284 -22186646 + (A)n Simple_repeat Simple_repeat 1 25 0 212 0 36 0 chrX 140413536 140413564 -22186366 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 858 112 41 18 chrX 140414123 140414292 -22185638 + L1MA8 LINE L1 6114 6286 -5 28 0 0 0 chrX 140414604 140414632 -22185298 + AT_rich Low_complexity Low_complexity 1 28 0 616 321 66 0 chrX 140414737 140414980 -22184950 - MIR SINE MIR -1 261 3 973 107 5 102 chrX 140415274 140415461 -22184469 - AluY SINE Alu -8 303 135 5260 85 16 8 chrX 140415729 140416479 -22183451 + L1PB2 LINE L1 5389 6144 -7 204 67 0 0 chrX 140417541 140417571 -22182359 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 212 364 0 26 chrX 140418874 140418951 -22180979 - L2 LINE L2 -188 3084 3010 251 320 88 72 chrX 140419400 140419731 -22180199 + L2 LINE L2 2924 3259 -13 2139 100 0 10 chrX 140420802 140421091 -22178839 + AluY SINE Alu 11 296 -15 185 339 0 15 chrX 140422978 140423043 -22176887 + L2 LINE L2 3250 3313 0 275 230 11 0 chrX 140423252 140423339 -22176591 + GA-rich Low_complexity Low_complexity 3 90 0 2342 95 0 7 chrX 140425599 140425905 -22174025 - AluSx SINE Alu -8 304 1 210 171 0 0 chrX 140426424 140426459 -22173471 - L2 LINE L2 -19 3253 3219 183 80 0 0 chrX 140428545 140428570 -22171360 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chrX 140428954 140428976 -22170954 + AT_rich Low_complexity Low_complexity 1 22 0 297 315 121 13 chrX 140429621 140429770 -22170160 + L2 LINE L2 2723 2887 -427 193 204 0 23 chrX 140431271 140431315 -22168615 - L2 LINE L2 0 3313 3271 1590 114 4 4 chrX 140431943 140432206 -22167724 - L1MA5 LINE L1 -5 6295 6033 1004 295 94 15 chrX 140433263 140433799 -22166131 + L2 LINE L2 2699 3274 -39 203 89 122 78 chrX 140434731 140434821 -22165109 + (TTAAA)n Simple_repeat Simple_repeat 5 98 0 626 158 33 0 chrX 140435129 140435249 -22164681 + MLT1D LTR MaLR 379 502 -3 346 346 114 9 chrX 140435264 140435475 -22164455 + L3 LINE CR1 449 681 -896 559 125 0 0 chrX 140435479 140435567 -22164363 + L1MD2 LINE L1 5845 5932 -427 2188 168 10 17 chrX 140435574 140435985 -22163945 - L1MB5 LINE L1 -8 6664 6257 2063 190 51 30 chrX 140436090 140436872 -22163058 - L1MB5 LINE L1 -419 6253 5458 * 2068 256 36 12 chrX 140436870 140437670 -22162260 - L1MB5 LINE L1 -2593 4051 3233 477 243 7 0 chrX 140437724 140437864 -22162066 - L1MB5 LINE L1 -3271 3373 3233 13698 131 20 28 chrX 140437891 140440298 -22159632 + Tigger1 DNA MER2_type 32 2418 0 420 195 4 30 chrX 140440299 140440423 -22159507 - L1MB5 LINE L1 -3852 2792 2670 4187 171 42 59 chrX 140440438 140440684 -22159246 - L1MA9 LINE L1 -31 6281 6032 2119 121 0 0 chrX 140440684 140440973 -22158957 - AluSx SINE Alu -23 289 1 4187 171 42 59 chrX 140440973 140441927 -22158003 - L1MA9 LINE L1 -280 6032 5137 2010 174 0 0 chrX 140441927 140442232 -22157698 - AluSx SINE Alu -7 305 1 4187 171 42 59 chrX 140442232 140442601 -22157329 - L1MA9 LINE L1 -1175 5137 4763 1661 217 147 38 chrX 140442669 140443100 -22156830 + L1 LINE L1 4360 4889 -1257 6586 71 21 0 chrX 140443100 140444123 -22155807 - L1PA8A LINE L1 0 6131 5104 1661 217 147 38 chrX 140444123 140444350 -22155580 + L1PA8A LINE L1 4889 5090 -1056 369 204 241 0 chrX 140444352 140444489 -22155441 - L1MB5 LINE L1 -3955 2691 2522 1669 155 17 28 chrX 140444493 140444870 -22155060 + MSTA LTR MaLR 1 428 0 3162 244 102 49 chrX 140444892 140446075 -22153855 - L1MB5 LINE L1 -4149 2497 1379 7882 13 0 0 chrX 140446075 140447556 -22152374 + L1PA3 LINE L1 4671 6151 -4 3162 244 102 49 chrX 140447556 140448730 -22151200 - L1MB5 LINE L1 -5267 1379 9 231 260 27 0 chrX 140448828 140448901 -22151029 + L1MD2 LINE L1 6047 6121 -238 486 271 246 52 chrX 140448921 140449001 -22150929 + L3 LINE CR1 1094 1157 -420 2534 197 68 11 chrX 140449001 140449534 -22150396 - MLT1F1 LTR MaLR -4 563 1 486 271 246 52 chrX 140449534 140449855 -22150075 + L3 LINE CR1 1157 1573 -4 22 0 0 0 chrX 140450306 140450328 -22149602 + AT_rich Low_complexity Low_complexity 1 22 0 751 350 130 14 chrX 140450448 140451017 -22148913 + L2 LINE L2 2196 2830 -484 440 183 0 0 chrX 140451103 140451196 -22148734 + MER53 DNA DNA 3 95 -94 434 300 93 0 chrX 140451327 140451477 -22148453 + L2 LINE L2 3148 3311 -2 29 60 0 0 chrX 140451633 140451683 -22148247 + AT_rich Low_complexity Low_complexity 1 50 0 1762 216 59 7 chrX 140452350 140452789 -22147141 - MLT1C LTR MaLR -3 464 3 1517 210 17 37 chrX 140452792 140453243 -22146687 - MLT1C-int LTR MaLR -1 1734 957 552 255 20 26 chrX 140453330 140453483 -22146447 - MLT1C-int LTR MaLR -453 918 767 870 173 153 20 chrX 140453483 140453731 -22146199 - MLT1C LTR MaLR -186 281 1 260 329 54 13 chrX 140454797 140454946 -22144984 + L2 LINE L2 2653 2807 -507 727 259 57 6 chrX 140454978 140455330 -22144600 + L1M4 LINE L1 2849 3218 -2928 2598 52 0 0 chrX 140455337 140455642 -22144288 + AluY SINE Alu 1 305 -6 327 104 0 0 chrX 140455642 140455690 -22144240 + (TA)n Simple_repeat Simple_repeat 2 49 0 25 0 0 0 chrX 140455696 140455721 -22144209 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrX 140456102 140456126 -22143804 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chrX 140457185 140457227 -22142703 + AT_rich Low_complexity Low_complexity 1 42 0 469 250 21 21 chrX 140457463 140457607 -22142323 + L1MEc LINE L1 36 179 -6217 1229 124 9 23 chrX 140457609 140457826 -22142104 + L1MA4 LINE L1 5787 6000 -300 335 97 0 32 chrX 140457826 140457888 -22142042 - L1MA4 LINE L1 -220 6080 6021 238 105 0 0 chrX 140457890 140457928 -22142002 - L1MA4 LINE L1 -401 5904 5867 1268 129 49 0 chrX 140457955 140458179 -22141751 + L1MA4 LINE L1 6058 6292 -8 3446 259 28 33 chrX 140458207 140459778 -22140152 + L1MEc LINE L1 175 1878 -4518 372 43 0 0 chrX 140461260 140461306 -22138624 + (CATA)n Simple_repeat Simple_repeat 3 48 0 570 342 34 53 chrX 140462952 140463478 -22136452 + L1MC4a LINE L1 5389 5904 -1904 36 70 0 0 chrX 140465329 140465400 -22134530 + AT_rich Low_complexity Low_complexity 1 71 0 336 272 87 53 chrX 140465410 140465616 -22134314 - MLT1J2 LTR MaLR -2 448 236 183 115 0 0 chrX 140465652 140465678 -22134252 + L2 LINE L2 3268 3293 -20 413 331 75 0 chrX 140466984 140467218 -22132712 + MIR SINE MIR 7 259 -3 314 212 15 0 chrX 140468112 140468178 -22131752 + L2 LINE L2 3204 3270 -2 181 290 0 72 chrX 140470665 140470734 -22129196 - L2 LINE L2 -85 3187 3124 5879 51 0 0 chrX 140472520 140473244 -22126686 + L1PA6 LINE L1 5431 6154 0 1665 95 174 0 chrX 140473280 140473533 -22126397 + AluSx SINE Alu 5 301 -11 5742 150 23 14 chrX 140474801 140474883 -22125047 - L1MC1 LINE L1 0 6333 6253 2285 124 12 15 chrX 140474883 140475221 -22124709 + MER1B DNA MER1_type 1 337 0 5742 150 23 14 chrX 140475221 140476294 -22123636 - L1MC1 LINE L1 -80 6253 5171 23 0 0 0 chrX 140476487 140476510 -22123420 + AT_rich Low_complexity Low_complexity 1 23 0 712 276 0 13 chrX 140476701 140476930 -22123000 - MLT1A1 LTR MaLR 0 365 164 2935 147 20 20 chrX 140477007 140477871 -22122059 + MER49 LTR ERV1 1 923 0 701 188 27 13 chrX 140477871 140478004 -22121926 - MLT1A1 LTR MaLR -230 135 1 431 225 112 64 chrX 140478168 140478417 -22121513 + MLT1D LTR MaLR 20 280 -225 2360 230 46 96 chrX 140478461 140479388 -22120542 + MLT1D-int LTR MaLR 475 1355 -16 1345 259 84 19 chrX 140479403 140479877 -22120053 + MLT1D LTR MaLR 1 505 0 226 326 38 34 chrX 140479982 140480273 -22119657 - L1 LINE L1 -1548 4598 4307 1025 212 83 1 chrX 140480418 140480693 -22119237 - L1MB2 LINE L1 0 6171 5907 * 1216 199 43 14 chrX 140480688 140480964 -22118966 - L1MC3 LINE L1 -41 7744 7461 433 333 14 0 chrX 140480967 140481108 -22118822 + L2 LINE L2 2562 2704 -610 2873 227 86 11 chrX 140481133 140481973 -22117957 - L1MC4 LINE L1 -1857 6185 5283 979 67 0 0 chrX 140481986 140482134 -22117796 - AluSc SINE Alu 0 310 163 34 0 0 0 chrX 140482142 140482176 -22117754 + AT_rich Low_complexity Low_complexity 1 34 0 1886 220 138 18 chrX 140482216 140482826 -22117104 - L1MC4 LINE L1 0 7785 5136 1193 198 55 0 chrX 140482836 140483074 -22116856 - L1MC3 LINE L1 -1141 6644 6394 13124 178 16 10 chrX 140483133 140484866 -22115064 - L1PB1 LINE L1 -1 6150 4429 207 0 0 0 chrX 140484866 140484889 -22115041 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 13124 178 16 10 chrX 140484889 140486108 -22113822 - L1PB1 LINE L1 -1722 4429 3170 243 0 0 0 chrX 140486108 140486135 -22113795 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 13124 178 16 10 chrX 140486135 140486870 -22113060 - L1PB1 LINE L1 -2981 3170 2441 7102 199 38 17 chrX 140536875 140538661 -22061269 + L1MA9 LINE L1 2473 4296 -1850 1508 169 82 5 chrX 140538667 140539035 -22060895 - L1 LINE L1 -1471 4675 4280 1456 160 7 0 chrX 140539055 140539324 -22060606 - L1 LINE L1 -2339 3807 3537 * 3648 198 35 21 chrX 140539312 140539397 -22060533 + L1MA9 LINE L1 4280 4362 -1784 2179 101 0 14 chrX 140539397 140539712 -22060218 + AluSx SINE Alu 1 311 0 3648 198 35 21 chrX 140539712 140540499 -22059431 + L1MA9 LINE L1 4362 5166 -980 735 148 0 18 chrX 140540501 140540758 -22059172 + AluJb SINE Alu 1 301 -11 3213 155 62 36 chrX 140540761 140541365 -22058565 + L1MA9 LINE L1 5165 5798 -514 486 28 42 0 chrX 140541365 140541437 -22058493 + (TA)n Simple_repeat Simple_repeat 1 75 0 3213 155 62 36 chrX 140541437 140541659 -22058271 + L1MA9 LINE L1 5798 6013 -299 22 0 0 0 chrX 140541659 140541681 -22058249 + AT_rich Low_complexity Low_complexity 1 22 0 264 77 0 0 chrX 140542616 140542655 -22057275 + (CA)n Simple_repeat Simple_repeat 2 40 0 507 60 0 0 chrX 140543491 140543558 -22056372 + (TG)n Simple_repeat Simple_repeat 1 67 0 401 242 125 8 chrX 140544284 140544412 -22055518 + MLT1-int LTR MaLR 1 143 -1228 337 177 39 131 chrX 140545179 140545271 -22054659 + MER103 DNA DNA 42 141 -25 1896 108 91 26 chrX 140545271 140545622 -22054308 + THE1C LTR MaLR 1 374 -1 924 178 44 11 chrX 140545622 140545802 -22054128 + MER5A DNA MER1_type 1 186 -3 337 177 39 131 chrX 140545802 140545838 -22054092 + MER103 DNA DNA 139 159 -7 21 36 0 0 chrX 140546012 140546040 -22053890 + AT_rich Low_complexity Low_complexity 1 28 0 1901 148 60 20 chrX 140546673 140547025 -22052905 - MER47A DNA MER2_type 0 366 1 427 293 9 0 chrX 140547360 140547476 -22052454 + L2 LINE L2 3191 3307 -6 183 80 0 0 chrX 140548082 140548107 -22051823 + (A)n Simple_repeat Simple_repeat 1 25 0 212 0 36 0 chrX 140548359 140548387 -22051543 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 858 112 41 18 chrX 140548946 140549115 -22050815 + L1MA8 LINE L1 6114 6286 -5 28 0 0 0 chrX 140549427 140549455 -22050475 + AT_rich Low_complexity Low_complexity 1 28 0 616 321 66 0 chrX 140549560 140549803 -22050127 - MIR SINE MIR -1 261 3 973 107 5 102 chrX 140550097 140550284 -22049646 - AluY SINE Alu -8 303 135 5260 85 16 8 chrX 140550552 140551302 -22048628 + L1PB2 LINE L1 5389 6144 -7 204 67 0 0 chrX 140552364 140552394 -22047536 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 212 364 0 26 chrX 140553697 140553774 -22046156 - L2 LINE L2 -188 3084 3010 251 320 88 72 chrX 140554223 140554554 -22045376 + L2 LINE L2 2924 3259 -13 2139 100 0 10 chrX 140555625 140555914 -22044016 + AluY SINE Alu 11 296 -15 185 339 0 15 chrX 140557801 140557866 -22042064 + L2 LINE L2 3250 3313 0 258 160 0 0 chrX 140558112 140558162 -22041768 + GA-rich Low_complexity Low_complexity 1 50 0 2342 95 0 7 chrX 140560180 140560486 -22039444 - AluSx SINE Alu -8 304 1 210 171 0 0 chrX 140561005 140561040 -22038890 - L2 LINE L2 -19 3253 3219 183 80 0 0 chrX 140563126 140563151 -22036779 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chrX 140563535 140563557 -22036373 + AT_rich Low_complexity Low_complexity 1 22 0 286 315 121 13 chrX 140564202 140564351 -22035579 + L2 LINE L2 2723 2887 -427 193 204 0 23 chrX 140565852 140565896 -22034034 - L2 LINE L2 0 3313 3271 1614 114 4 4 chrX 140566526 140566789 -22033141 - L1MA5 LINE L1 -5 6295 6033 992 295 94 15 chrX 140567846 140568382 -22031548 + L2 LINE L2 2699 3274 -39 203 89 122 78 chrX 140569314 140569404 -22030526 + (TTAAA)n Simple_repeat Simple_repeat 5 98 0 180 277 0 21 chrX 140569944 140569991 -22029939 - MIR SINE MIR -180 82 37 * 612 203 23 0 chrX 140569985 140570113 -22029817 + MIR SINE MIR 77 207 -55 2175 115 0 0 chrX 140570365 140570651 -22029279 + AluSx SINE Alu 1 286 -26 318 26 0 0 chrX 140570651 140570690 -22029240 + (CATA)n Simple_repeat Simple_repeat 2 40 0 210 250 36 107 chrX 140571145 140571229 -22028701 + L2 LINE L2 3100 3177 -95 29 47 0 0 chrX 140571617 140571660 -22028270 + AT_rich Low_complexity Low_complexity 1 43 0 533 267 0 75 chrX 140571862 140572008 -22027922 - L2 LINE L2 0 3272 3138 187 319 43 0 chrX 140572219 140572288 -22027642 - MIR SINE MIR -3 259 188 290 56 0 0 chrX 140573609 140573645 -22026285 - U2 snRNA snRNA -152 36 1 663 217 0 0 chrX 140575095 140575215 -22024715 + FLAM_A SINE Alu 1 120 -13 5919 56 7 0 chrX 140575235 140575982 -22023948 + L1PA8 LINE L1 5409 6160 -12 25 31 0 0 chrX 140576350 140576382 -22023548 + AT_rich Low_complexity Low_complexity 1 32 0 2082 101 60 3 chrX 140576383 140576719 -22023211 - L1MA3 LINE L1 -9 6296 5942 198 0 0 0 chrX 140580465 140580487 -22019443 + (GA)n Simple_repeat Simple_repeat 1 22 0 22 56 0 0 chrX 140580498 140580534 -22019396 + AT_rich Low_complexity Low_complexity 1 36 0 459 263 40 76 chrX 140582380 140582587 -22017343 + MIR3 SINE MIR 2 198 -64 442 140 39 45 chrX 140582962 140583141 -22016789 + (TA)n Simple_repeat Simple_repeat 2 179 0 258 116 0 0 chrX 140583179 140583222 -22016708 + (GA)n Simple_repeat Simple_repeat 2 44 0 319 205 213 39 chrX 140583244 140583371 -22016559 + L1ME4a LINE L1 5973 6121 0 775 257 53 29 chrX 140584016 140584261 -22015669 - MIR SINE MIR 0 262 12 238 332 116 54 chrX 140584339 140585122 -22014808 - L2 LINE L2 -894 2420 1589 495 259 96 30 chrX 140586254 140586545 -22013385 + L1ME4a LINE L1 5656 5962 -159 210 171 0 0 chrX 140586923 140586964 -22012966 + (CACCAT)n Simple_repeat Simple_repeat 4 44 0 23 0 0 0 chrX 140586994 140587017 -22012913 + AT_rich Low_complexity Low_complexity 1 23 0 642 201 30 8 chrX 140587416 140587550 -22012380 - L2 LINE L2 -16 3297 3161 3854 245 42 65 chrX 140587572 140589140 -22010790 - L2 LINE L2 -71 3242 1695 2692 157 30 2 chrX 140589142 140589568 -22010362 - LTR9B LTR ERV1 -180 464 27 1422 222 30 188 chrX 140589570 140590819 -22009111 - L2 LINE L2 -1619 1695 644 23 54 0 0 chrX 140591436 140591473 -22008457 + AT_rich Low_complexity Low_complexity 1 37 0 244 203 16 16 chrX 140591508 140591572 -22008358 + T-rich Low_complexity Low_complexity 1 64 0 1952 148 39 24 chrX 140592454 140592786 -22007144 - MER1B DNA MER1_type 0 337 1 7422 24 0 42 chrX 140593095 140594284 -22005646 + L1PA3 LINE L1 5003 6152 -3 1746 167 0 20 chrX 140594986 140595285 -22004645 - AluJo SINE Alu -19 293 1 215 214 0 0 chrX 140595314 140595356 -22004574 - MIR SINE MIR -155 107 66 13994 132 35 21 chrX 140595361 140596796 -22003134 - Tigger1 DNA MER2_type 0 2418 937 2176 101 23 13 chrX 140596796 140597104 -22002826 + AluSx SINE Alu 1 311 -1 13994 132 35 21 chrX 140597104 140598054 -22001876 - Tigger1 DNA MER2_type -1481 937 1 201 74 0 0 chrX 140598358 140598385 -22001545 + (TG)n Simple_repeat Simple_repeat 1 27 0 234 153 0 0 chrX 140599287 140599346 -22000584 + (CA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chrX 140600021 140600043 -21999887 + AT_rich Low_complexity Low_complexity 1 22 0 6456 125 32 14 chrX 140602879 140603204 -21996726 + L1MA4 LINE L1 4961 5279 -1021 216 0 0 0 chrX 140603204 140603228 -21996702 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6456 125 32 14 chrX 140603228 140603860 -21996070 + L1MA4 LINE L1 5279 5943 -357 2237 84 0 39 chrX 140603860 140604169 -21995761 - AluY SINE Alu -14 297 1 6456 125 32 14 chrX 140604169 140604529 -21995401 + L1MA4 LINE L1 5943 6295 -5 270 81 0 0 chrX 140608608 140608645 -21991285 + (TG)n Simple_repeat Simple_repeat 2 38 0 2269 68 0 77 chrX 140610346 140610683 -21989247 - AluY SINE Alu 0 311 1 1603 241 108 40 chrX 140610843 140610894 -21989036 + L1MC4 LINE L1 7259 7305 -737 423 0 0 0 chrX 140610894 140610941 -21988989 + (CA)n Simple_repeat Simple_repeat 2 48 0 1603 241 108 40 chrX 140610941 140611623 -21988307 + L1MC4 LINE L1 7305 8042 0 634 310 110 9 chrX 140611691 140611987 -21987943 - L2 LINE L2 -10 3303 2970 2063 166 43 11 chrX 140611987 140612426 -21987504 + L1MB7 LINE L1 5732 6184 0 634 310 110 9 chrX 140612426 140612455 -21987475 - L2 LINE L2 -343 2970 2945 343 262 41 41 chrX 140612440 140612612 -21987318 - L2 LINE L2 -2468 846 675 * 22 0 0 0 chrX 140612951 140612973 -21986957 + AT_rich Low_complexity Low_complexity 1 22 0 581 308 22 8 chrX 140614489 140614664 -21985266 - MER5B DNA MER1_type -6 183 2 1283 130 13 48 chrX 140614679 140614910 -21985020 - MER58A DNA MER1_type -1 223 1 380 323 164 72 chrX 140614976 140615369 -21984561 + L2 LINE L2 1357 1712 -1602 180 0 0 0 chrX 140615369 140615389 -21984541 + (TTCCC)n Simple_repeat Simple_repeat 4 23 0 380 323 164 72 chrX 140615389 140616140 -21983790 + L2 LINE L2 1712 2607 -707 318 372 15 7 chrX 140616423 140616560 -21983370 + L3 LINE CR1 1084 1221 -356 867 128 8 0 chrX 140617909 140618034 -21981896 + AluSq/x SINE Alu 2 127 -185 272 156 0 0 chrX 140618042 140618134 -21981796 + Alu SINE Alu 238 313 0 2396 80 3 0 chrX 140619620 140619921 -21980009 - AluSp SINE Alu -11 302 1 31 0 0 0 chrX 140620038 140620069 -21979861 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chrX 140624649 140624674 -21975256 + AT_rich Low_complexity Low_complexity 1 25 0 228 272 10 29 chrX 140627313 140627416 -21972514 + G-rich Low_complexity Low_complexity 2 102 0 243 0 0 0 chrX 140627705 140627732 -21972198 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 2037 108 4 0 chrX 140630271 140630548 -21969382 + AluSq SINE Alu 1 278 -35 228 135 0 0 chrX 140630548 140630585 -21969345 + (CA)n Simple_repeat Simple_repeat 2 38 0 510 269 14 21 chrX 140631125 140631266 -21968664 + MIR3 SINE MIR 21 160 -48 1063 176 0 0 chrX 140632341 140632517 -21967413 + FRAM SINE Alu 1 175 -1 447 297 0 8 chrX 140633150 140633278 -21966652 + L3b LINE CR1 1296 1422 -161 1343 167 39 18 chrX 140633527 140633809 -21966121 - AluJo SINE Alu -12 300 13 503 318 22 22 chrX 140634803 140634982 -21964948 - MIR SINE MIR -37 225 47 220 215 123 15 chrX 140635906 140635971 -21963959 - L2 LINE L2 0 3272 3201 495 316 119 5 chrX 140635978 140636031 -21963899 - MIR SINE MIR -2 260 214 1125 172 14 10 chrX 140636031 140636240 -21963690 - MER6B DNA MER2_type 0 210 1 495 316 119 5 chrX 140636240 140636404 -21963526 - MIR SINE MIR -48 214 18 355 216 110 173 chrX 140637362 140637617 -21962313 - L1MEd LINE L1 -4914 1205 967 193 128 43 0 chrX 140637706 140637753 -21962177 + (TA)n Simple_repeat Simple_repeat 2 50 0 189 107 0 0 chrX 140638768 140638796 -21961134 + (TAA)n Simple_repeat Simple_repeat 2 29 0 942 291 5 5 chrX 140638798 140639021 -21960909 - MIR SINE MIR -6 256 34 652 262 17 76 chrX 140639733 140639970 -21959960 - MIR SINE MIR -5 257 35 543 311 0 83 chrX 140640030 140640271 -21959659 + L3 LINE CR1 1307 1527 -50 495 262 18 24 chrX 140640292 140640460 -21959470 - MER110 LTR ERV1 -7 484 318 1665 158 28 16 chrX 140640613 140640936 -21958994 + L1MD3 LINE L1 7668 7994 -1 293 341 32 32 chrX 140641900 140642026 -21957904 + MIR3 SINE MIR 48 173 -35 824 328 12 0 chrX 140642186 140642445 -21957485 + MIR SINE MIR 1 262 0 753 257 82 16 chrX 140642632 140642877 -21957053 - MIR SINE MIR 0 262 2 398 294 117 6 chrX 140642881 140643044 -21956886 - MIR SINE MIR 0 262 82 2535 265 72 31 chrX 140644842 140645595 -21954335 + L1ME2 LINE L1 1132 1853 -5088 284 0 28 0 chrX 140645595 140645631 -21954299 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2535 265 72 31 chrX 140645631 140646084 -21953846 + L1ME2 LINE L1 1853 2286 -4655 1358 59 0 0 chrX 140646084 140646253 -21953677 + L1PA5 LINE L1 5983 6151 -3 2535 265 72 31 chrX 140646253 140647803 -21952127 + L1ME2 LINE L1 2286 4157 -2784 * 3039 244 23 8 chrX 140647797 140648666 -21951264 + L1ME2 LINE L1 6078 6959 0 290 241 0 0 chrX 140648786 140648840 -21951090 - MER5A DNA MER1_type -22 167 114 279 275 214 30 chrX 140648787 140648918 -21951012 + MER5A DNA MER1_type 35 189 0 * 412 280 77 36 chrX 140649492 140649660 -21950270 + MIR SINE MIR 88 262 0 376 202 11 45 chrX 140649978 140650067 -21949863 + L2 LINE L2 3227 3312 -1 186 143 0 0 chrX 140652616 140652651 -21947279 + (TA)n Simple_repeat Simple_repeat 2 36 0 316 343 184 7 chrX 140652858 140653129 -21946801 + L3b LINE CR1 1117 1435 -148 828 224 23 6 chrX 140656622 140656796 -21943134 + MER45A DNA AcHobo 2 178 0 362 335 98 73 chrX 140657834 140658150 -21941780 + L2 LINE L2 2877 3200 -72 234 0 0 0 chrX 140658397 140658423 -21941507 + (TC)n Simple_repeat Simple_repeat 2 27 0 3871 120 43 3 chrX 140658955 140659611 -21940319 + L1MC1 LINE L1 5647 6328 -5 265 248 33 118 chrX 140659654 140659807 -21940123 - MIR SINE MIR -70 192 53 361 275 37 0 chrX 140660328 140660437 -21939493 + MIR SINE MIR 143 255 -7 263 319 18 66 chrX 140660554 140660720 -21939210 - L2 LINE L2 -7 3265 3108 350 322 76 66 chrX 140661616 140661920 -21938010 - L2 LINE L2 0 3272 2966 678 303 17 21 chrX 140662489 140662727 -21937203 + MIR SINE MIR 2 238 -24 1435 233 36 26 chrX 140664132 140664518 -21935412 + MLT1B LTR MaLR 1 390 0 558 136 48 0 chrX 140664664 140664767 -21935163 + L1MB1 LINE L1 6061 6168 0 501 300 26 102 chrX 140664846 140665159 -21934771 - L2 LINE L2 -11 3261 2973 453 36 0 0 chrX 140665230 140665285 -21934645 + (CA)n Simple_repeat Simple_repeat 2 56 0 227 291 39 118 chrX 140665373 140665576 -21934354 - L2 LINE L2 -199 3073 2887 458 394 40 19 chrX 140665582 140666102 -21933828 - L2 LINE L2 -368 2946 2416 303 149 35 46 chrX 140666340 140666427 -21933503 - L1PA16 LINE L1 -22 6144 6059 723 315 63 46 chrX 140666642 140667102 -21932828 - L2 LINE L2 -1035 2279 1812 430 276 39 26 chrX 140667778 140667934 -21931996 - MIR SINE MIR -56 206 49 198 146 49 171 chrX 140667933 140668015 -21931915 - L2 LINE L2 0 3313 3242 * 2249 108 3 0 chrX 140668052 140668349 -21931581 + AluSx SINE Alu 1 298 -14 188 258 76 15 chrX 140668538 140668604 -21931326 - L2 LINE L2 -53 3219 3150 209 224 12 129 chrX 140668998 140669083 -21930847 - L2 LINE L2 -4 3309 3235 293 289 202 0 chrX 140670162 140670266 -21929664 + L2 LINE L2 3189 3313 0 2716 183 9 33 chrX 140670459 140671011 -21928919 + MER68 LTR ERV1 24 562 0 366 347 16 0 chrX 140671068 140671189 -21928741 + L2 LINE L2 3191 3313 0 2080 133 55 45 chrX 140671722 140672104 -21927826 + MLT1B LTR MaLR 1 386 -4 585 350 42 4 chrX 140673683 140673920 -21926010 - MIR SINE MIR -14 248 3 403 258 230 32 chrX 140675564 140675781 -21924149 + MIR3 SINE MIR 3 262 0 202 271 0 51 chrX 140675859 140675918 -21924012 - L2 LINE L2 -15 3257 3202 334 282 0 14 chrX 140676558 140676671 -21923259 - MIR SINE MIR -85 123 15 213 383 46 5 chrX 140677646 140677842 -21922088 + L2 LINE L2 1963 2166 -1148 850 235 20 0 chrX 140677864 140678068 -21921862 + MER3 DNA MER1_type 2 209 0 986 251 4 30 chrX 140678485 140678720 -21921210 + MIR SINE MIR 8 236 -26 224 190 38 25 chrX 140679006 140679085 -21920845 + (TA)n Simple_repeat Simple_repeat 2 81 0 208 151 55 27 chrX 140679146 140679219 -21920711 + (TA)n Simple_repeat Simple_repeat 2 76 0 918 199 78 78 chrX 140680341 140680673 -21919257 + MER58B DNA MER1_type 9 340 -1 344 271 90 23 chrX 140680930 140681063 -21918867 + MIR SINE MIR 13 154 -108 345 281 8 55 chrX 140681530 140681658 -21918272 + MIR SINE MIR 11 132 -130 * 545 305 69 78 chrX 140681615 140682210 -21917720 + L2 LINE L2 2713 3313 0 975 194 0 0 chrX 140682695 140682886 -21917044 - L1P LINE L1 -1114 5032 4842 310 231 336 35 chrX 140683253 140683396 -21916534 - MER5A DNA MER1_type 0 189 4 426 315 21 21 chrX 140683597 140683740 -21916190 + MIR SINE MIR 11 153 -109 711 184 128 15 chrX 140684281 140684477 -21915453 + L1ME3A LINE L1 5952 6169 -1 470 67 22 22 chrX 140684573 140684663 -21915267 + (TA)n Simple_repeat Simple_repeat 1 90 0 637 253 122 53 chrX 140685178 140685423 -21914507 + MIR SINE MIR 1 262 0 351 198 55 11 chrX 140685946 140686037 -21913893 - MER103 DNA DNA -7 159 65 337 221 12 47 chrX 140686058 140686144 -21913786 - L2 LINE L2 0 3313 3231 450 326 29 92 chrX 140686215 140686663 -21913267 + L2 LINE L2 2846 3265 -7 878 150 32 21 chrX 140687273 140687460 -21912470 - MER53 DNA DNA 0 189 1 23 68 0 0 chrX 140687815 140687859 -21912071 + AT_rich Low_complexity Low_complexity 1 44 0 396 59 0 0 chrX 140687915 140687966 -21911964 + (TA)n Simple_repeat Simple_repeat 2 52 0 25 65 0 0 chrX 140688034 140688080 -21911850 + AT_rich Low_complexity Low_complexity 1 46 0 46 19 0 0 chrX 140688933 140688986 -21910944 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chrX 140689599 140689629 -21910301 + AT_rich Low_complexity Low_complexity 1 30 0 281 87 0 22 chrX 140690177 140690223 -21909707 + (ATG)n Simple_repeat Simple_repeat 3 47 0 788 321 37 0 chrX 140690225 140690471 -21909459 - MIR SINE MIR -4 258 4 220 336 36 18 chrX 140690583 140690693 -21909237 + L2 LINE L2 3183 3294 -19 241 226 16 0 chrX 140690714 140690776 -21909154 - MER116 DNA Mariner 0 80 18 1941 151 3 19 chrX 140690850 140691162 -21908768 - AluSx SINE Alu -1 311 5 208 338 0 14 chrX 140692206 140692280 -21907650 - MIR SINE MIR -30 232 160 545 291 29 42 chrX 140692306 140692524 -21907406 - MIR SINE MIR -42 220 5 2571 244 76 50 chrX 140692752 140693933 -21905997 + L1MDb LINE L1 7 1106 -5303 1057 44 0 0 chrX 140693947 140694083 -21905847 + L1P LINE L1 1 136 -6010 761 100 43 29 chrX 140694084 140694224 -21905706 + L1M1 LINE L1 5345 5486 -816 * 40447 34 23 2 chrX 140694215 140700236 -21899694 + L1PA3 LINE L1 7 6155 0 512 292 107 0 chrX 140700284 140700462 -21899468 + L2 LINE L2 1812 2008 -1306 2938 305 185 20 chrX 140700487 140702157 -21897773 + L2 LINE L2 841 2786 -528 275 197 14 56 chrX 140702632 140702703 -21897227 + MIR SINE MIR 54 121 -87 1448 184 21 45 chrX 140703223 140703439 -21896491 - MLT1A1 LTR MaLR 0 365 145 201 74 0 0 chrX 140703439 140703466 -21896464 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1976 58 0 0 chrX 140703468 140703710 -21896220 - L1PA8 LINE L1 -19 6153 5912 1448 184 21 45 chrX 140703710 140703864 -21896066 - MLT1A1 LTR MaLR -221 144 1 3141 201 80 123 chrX 140703870 140705073 -21894857 - MLT1A1-int LTR MaLR -8 1363 229 2155 99 0 41 chrX 140705073 140705387 -21894543 - AluSc SINE Alu -8 301 1 3141 201 80 123 chrX 140705387 140705603 -21894327 - MLT1A1-int LTR MaLR -1142 229 5 252 169 68 17 chrX 140705607 140705666 -21894264 - MLT1A2 LTR MaLR 0 374 313 2461 68 3 0 chrX 140705671 140705978 -21893952 + AluY SINE Alu 1 308 -3 247 171 0 0 chrX 140705994 140706035 -21893895 + MLT1B LTR MaLR 275 315 -75 * 1086 216 72 14 chrX 140706032 140706323 -21893607 - MLT1A2 LTR MaLR -66 308 1 215 283 126 75 chrX 140706527 140706686 -21893244 + L2 LINE L2 2918 3084 -188 337 266 0 0 chrX 140706823 140706902 -21893028 - MER2 DNA MER2_type 0 345 267 260 138 0 0 chrX 140706931 140706989 -21892941 + L1MA3 LINE L1 6243 6300 -5 1041 193 0 37 chrX 140707018 140707236 -21892694 - MER2 DNA MER2_type -135 210 1 434 287 0 39 chrX 140708205 140708334 -21891596 - MIR SINE MIR -110 152 29 304 259 65 72 chrX 140708383 140708522 -21891408 - MIR3 SINE MIR -66 142 5 1128 281 27 50 chrX 140708741 140709218 -21890712 + MLT1C LTR MaLR 1 466 -1 505 256 101 41 chrX 140709623 140709842 -21890088 + MIR SINE MIR 25 256 -6 301 264 11 0 chrX 140711566 140711653 -21888277 + MER94 DNA DNA 11 98 -36 212 359 16 0 chrX 140711695 140711759 -21888171 + L2 LINE L2 3208 3272 0 27594 117 11 28 chrX 140711963 140718459 -21881471 - L1PA8 LINE L1 -2 6485 6 407 323 155 32 chrX 140718528 140719095 -21880835 + L2 LINE L2 2013 2649 -665 212 328 90 0 chrX 140719201 140719268 -21880662 + L3b LINE CR1 1487 1559 -24 933 144 29 6 chrX 140721597 140721770 -21878160 - L1MB1 LINE L1 -1 6167 5991 198 390 12 0 chrX 140721863 140721945 -21877985 + L2 LINE L2 3188 3270 -2 26024 54 2 1 chrX 140723245 140727514 -21872416 + L1PA5 LINE L1 1882 6153 -1 542 271 17 51 chrX 140727614 140727850 -21872080 + L2 LINE L2 2328 2555 -759 2325 143 49 4 chrX 140727863 140728316 -21871614 - L1MB8 LINE L1 -60 6118 5646 3883 67 52 19 chrX 140728632 140729170 -21870760 - L1PA8A LINE L1 -12 6119 5564 301 290 38 61 chrX 140729170 140729301 -21870629 + L2 LINE L2 2546 2673 -641 411 341 109 35 chrX 140729510 140729821 -21870109 - L3 LINE CR1 -624 953 620 361 285 67 0 chrX 140729975 140730154 -21869776 + L1MC/D LINE L1 4469 4659 -1487 5384 152 25 4 chrX 140730262 140731386 -21868544 + L1MA8 LINE L1 5141 6291 0 1532 255 59 43 chrX 140731415 140731603 -21868327 + L1MC/D LINE L1 4768 4951 -1533 688 11 0 22 chrX 140731603 140731693 -21868237 + L1PA2 LINE L1 6068 6155 0 1532 255 59 43 chrX 140731693 140732465 -21867465 + L1MC/D LINE L1 4951 5735 -749 274 157 0 0 chrX 140732479 140732530 -21867400 + L1MC4 LINE L1 7992 8042 0 1553 98 31 9 chrX 140732560 140732785 -21867145 - MER30 DNA MER1_type 0 230 1 941 264 18 0 chrX 140733711 140733931 -21865999 - MER58A DNA MER1_type 0 224 1 253 263 105 42 chrX 140733944 140734039 -21865891 + L2 LINE L2 3169 3269 -3 519 313 16 55 chrX 140734099 140734355 -21865575 - L3 LINE CR1 -15 1562 1317 426 20 0 0 chrX 140734402 140734453 -21865477 + (CA)n Simple_repeat Simple_repeat 1 51 0 473 291 17 0 chrX 140734459 140734576 -21865354 - MIR3 SINE MIR -26 182 64 23 33 0 0 chrX 140734714 140734744 -21865186 + AT_rich Low_complexity Low_complexity 1 30 0 241 298 64 21 chrX 140734790 140734884 -21865046 + MIR SINE MIR 16 113 -95 463 273 191 10 chrX 140735015 140735224 -21864706 + MIR SINE MIR 1 247 -15 442 350 79 58 chrX 140736223 140736316 -21863614 - L2 LINE L2 -8 3264 3174 903 223 52 9 chrX 140736316 140736527 -21863403 - MER58A DNA MER1_type -4 220 1 442 350 79 58 chrX 140736527 140736862 -21863068 - L2 LINE L2 -98 3174 2827 492 215 8 17 chrX 140737138 140737274 -21862656 + MER3 DNA MER1_type 43 130 -79 1629 186 35 3 chrX 140737277 140737653 -21862277 + MER3 DNA MER1_type 2237 2624 0 727 301 9 0 chrX 140738321 140738534 -21861396 - LTR33 LTR ERVL -9 512 298 221 259 32 70 chrX 140738940 140739098 -21860832 - L2 LINE L2 -289 2983 2832 2163 155 6 23 chrX 140739147 140739496 -21860434 + MER61A LTR ERV1 1 343 0 190 262 41 138 chrX 140739626 140739771 -21860159 - MIR SINE MIR -12 250 120 633 292 25 37 chrX 140741092 140741335 -21858595 + MIR SINE MIR 4 243 -19 661 216 40 0 chrX 140741467 140741592 -21858338 + MIR SINE MIR 15 144 -118 354 275 275 5 chrX 140743705 140743898 -21856032 - MIR SINE MIR 0 262 18 2675 7 3 7 chrX 140744195 140744496 -21855434 + AluY SINE Alu 1 300 -11 211 158 26 0 chrX 140744732 140744770 -21855160 - L2 LINE L2 -8 3305 3267 1066 250 12 79 chrX 140744856 140745093 -21854837 + MSTD LTR MaLR 5 256 -140 2292 142 42 37 chrX 140745093 140745523 -21854407 + MSTB1 LTR MaLR 1 432 0 1066 250 12 79 chrX 140745523 140745633 -21854297 + MSTD LTR MaLR 256 322 -74 2268 102 0 7 chrX 140745633 140745926 -21854004 - AluSx SINE Alu -21 291 1 1066 250 12 79 chrX 140745926 140745997 -21853933 + MSTD LTR MaLR 322 396 0 4901 240 52 57 chrX 140745999 140746590 -21853340 + MSTD-int LTR MaLR 2 595 -1140 399 21 0 0 chrX 140746590 140746638 -21853292 + (TG)n Simple_repeat Simple_repeat 2 49 0 4901 240 52 57 chrX 140746638 140747553 -21852377 + MSTD-int LTR MaLR 595 1500 -235 19536 179 17 21 chrX 140747579 140752931 -21846999 - L1PA13 LINE L1 0 7601 2270 7873 225 21 5 chrX 140752947 140754630 -21845300 - L1PA13 LINE L1 -5871 1710 1 936 189 118 9 chrX 140754633 140754861 -21845069 + MSTD-int LTR MaLR 1483 1735 0 1502 233 30 38 chrX 140754861 140755260 -21844670 + MSTD LTR MaLR 1 396 0 228 313 48 0 chrX 140755799 140755882 -21844048 + MIR SINE MIR 100 186 -76 198 378 59 7 chrX 140756947 140757082 -21842848 + MIR SINE MIR 21 162 -100 34 0 0 0 chrX 140757415 140757449 -21842481 + AT_rich Low_complexity Low_complexity 1 34 0 204 275 101 14 chrX 140757807 140757876 -21842054 + MIR SINE MIR 171 245 -17 29 28 0 0 chrX 140758295 140758331 -21841599 + AT_rich Low_complexity Low_complexity 1 36 0 1218 179 33 0 chrX 140758537 140758749 -21841181 + MER20 DNA MER1_type 1 219 0 343 287 209 19 chrX 140760511 140760769 -21839161 + L2 LINE L2 1965 2271 -1043 214 196 0 43 chrX 140760788 140760834 -21839096 + L2 LINE L2 3220 3263 -9 22 56 0 0 chrX 140760834 140760870 -21839060 + AT_rich Low_complexity Low_complexity 1 36 0 229 268 49 56 chrX 140760946 140761088 -21838842 + MLT1H LTR MaLR 382 522 -27 289 309 73 24 chrX 140761123 140761246 -21838684 + L2 LINE L2 3134 3262 -10 274 207 184 0 chrX 140761364 140761451 -21838479 - MIR SINE MIR -2 260 158 333 0 0 0 chrX 140762093 140762130 -21837800 + (TG)n Simple_repeat Simple_repeat 2 38 0 1241 123 0 0 chrX 140762451 140762638 -21837292 + MSTA LTR MaLR 242 428 0 367 273 151 22 chrX 140763071 140763210 -21836720 + MIR SINE MIR 24 180 -82 241 256 22 56 chrX 140764309 140764399 -21835531 - MER5B DNA MER1_type 0 178 92 296 100 0 0 chrX 140764521 140764561 -21835369 - Tigger4(Zombi) DNA MER2_type -1 2730 2691 364 277 0 0 chrX 140764614 140764697 -21835233 - MER5B DNA MER1_type -94 84 2 252 232 36 18 chrX 140764706 140764762 -21835168 + MER5C DNA MER1_type 1 57 -267 222 167 200 0 chrX 140764864 140764924 -21835006 - MER5C DNA MER1_type -248 76 5 275 291 0 0 chrX 140765136 140765215 -21834715 + MER103 DNA DNA 43 121 -45 5592 89 0 1 chrX 140766642 140767394 -21832536 - L1PA10 LINE L1 -10 6158 5408 8994 117 10 9 chrX 140767395 140768914 -21831016 + L1PA10 LINE L1 3910 5436 -732 417 39 0 0 chrX 140769507 140769558 -21830372 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chrX 140770611 140770634 -21829296 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chrX 140771870 140771901 -21828029 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chrX 140774662 140774686 -21825244 + AT_rich Low_complexity Low_complexity 1 24 0 372 308 9 9 chrX 140777463 140777570 -21822360 - MIR3 SINE MIR -37 171 65 2214 118 0 7 chrX 140777629 140777934 -21821996 + AluSx SINE Alu 2 304 -8 367 326 171 29 chrX 140778848 140779222 -21820708 + L2 LINE L2 2818 3244 -28 209 213 43 0 chrX 140779407 140779454 -21820476 + L2 LINE L2 3179 3227 -86 231 238 0 16 chrX 140779595 140779658 -21820272 + L2 LINE L2 3210 3271 -1 440 247 48 55 chrX 140779699 140779822 -21820108 + MIR3 SINE MIR 33 156 -52 1071 171 8 73 chrX 140779822 140780056 -21819874 - MER20 DNA MER1_type 0 219 1 440 247 48 55 chrX 140780056 140780078 -21819852 + MIR3 SINE MIR 156 177 -31 798 211 22 28 chrX 140780854 140781034 -21818896 - MER5A DNA MER1_type -9 180 2 655 286 11 11 chrX 140781111 140781289 -21818641 + MER5B DNA MER1_type 1 178 0 606 0 64 0 chrX 140781330 140781424 -21818506 + (TC)n Simple_repeat Simple_repeat 2 101 0 758 199 14 14 chrX 140782047 140782193 -21817737 - MER5B DNA MER1_type 0 178 33 337 263 12 7 chrX 140782471 140782573 -21817357 + MIR SINE MIR 53 151 -58 387 250 0 30 chrX 140782582 140782682 -21817248 + MER5A DNA MER1_type 13 109 -80 1427 164 71 41 chrX 140783056 140783325 -21816605 + AluJo SINE Alu 5 281 -31 2193 116 59 37 chrX 140783325 140783680 -21816250 - THE1B LTR MaLR -1 363 1 554 0 15 0 chrX 140783690 140783756 -21816174 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 282 143 0 0 chrX 140784271 140784320 -21815610 + (TG)n Simple_repeat Simple_repeat 1 49 0 315 290 205 10 chrX 140786187 140786387 -21813543 - MIR SINE MIR -20 242 4 1906 246 89 40 chrX 140786422 140787004 -21812926 + MLT1E2 LTR MaLR 13 623 -3 1683 267 21 61 chrX 140787202 140788034 -21811896 - L2 LINE L2 -3 3310 2534 230 256 163 12 chrX 140788453 140788539 -21811391 + MIR3 SINE MIR 92 190 -18 3332 45 0 15 chrX 140789679 140790059 -21809871 + L1PA5 LINE L1 5761 6136 -18 192 40 0 0 chrX 140790059 140790084 -21809846 + (TA)n Simple_repeat Simple_repeat 2 26 0 3332 45 0 15 chrX 140790084 140790103 -21809827 + L1PA5 LINE L1 6136 6154 0 2384 83 27 0 chrX 140790867 140791168 -21808762 + AluSg SINE Alu 1 309 -1 1572 233 53 76 chrX 140791412 140791903 -21808027 + MLT2B1 LTR ERVL 1 481 -39 342 0 0 0 chrX 140791903 140791941 -21807989 + (CA)n Simple_repeat Simple_repeat 2 39 0 1572 233 53 76 chrX 140791941 140791977 -21807953 + MLT2B1 LTR ERVL 481 516 -4 977 245 139 25 chrX 140792242 140792601 -21807329 + MLT1E3 LTR MaLR 102 501 -123 1764 93 4 32 chrX 140792920 140793168 -21806762 + L1PA8A LINE L1 5891 6131 0 4214 196 44 17 chrX 140793329 140794061 -21805869 - L1MB4 LINE L1 0 6180 5401 8100 23 26 5 chrX 140794061 140795000 -21804930 - L1PA4 LINE L1 -3 6152 5209 4214 196 44 17 chrX 140795000 140795438 -21804492 - L1MB4 LINE L1 -779 5401 4976 1757 39 0 0 chrX 140795437 140795645 -21804285 - L1PA7 LINE L1 -21 6133 5926 * 5264 75 1 0 chrX 140795645 140796510 -21803420 + L1PA7 LINE L1 5048 5913 -241 3292 228 30 6 chrX 140796508 140797307 -21802623 - L1MB4 LINE L1 -1154 4992 4175 * 3568 234 45 10 chrX 140797304 140798321 -21801609 - L1MB4 LINE L1 -2481 3665 2613 485 274 8 16 chrX 140799868 140799992 -21799938 + MIR3 SINE MIR 34 156 -52 553 183 158 24 chrX 140801086 140801250 -21798680 - LTR16A1 LTR ERVL -104 353 168 358 326 214 0 chrX 140801417 140801632 -21798298 + L2 LINE L2 2819 3079 -234 353 238 107 57 chrX 140801639 140801761 -21798169 + L2 LINE L2 3186 3313 0 315 245 187 22 chrX 140802470 140802609 -21797321 + MIR SINE MIR 73 234 -28 613 300 50 46 chrX 140802938 140803198 -21796732 + MIR SINE MIR 2 262 0 249 258 76 15 chrX 140803399 140803465 -21796465 + MIR SINE MIR 21 90 -118 295 283 100 17 chrX 140803483 140803603 -21796327 + L2 LINE L2 3183 3312 -1 279 314 95 88 chrX 140803755 140804038 -21795892 + L2 LINE L2 2932 3216 -56 263 182 91 15 chrX 140804882 140804948 -21794982 - L2 LINE L2 -2 3311 3241 326 359 0 0 chrX 140805176 140805282 -21794648 - L2 LINE L2 0 3313 3208 2289 108 0 0 chrX 140805840 140806136 -21793794 - AluSx SINE Alu -16 296 1 225 200 20 20 chrX 140806196 140806246 -21793684 - L2 LINE L2 -5 3267 3218 564 235 76 0 chrX 140806402 140806534 -21793396 - MIR SINE MIR -25 237 96 1711 169 55 44 chrX 140806855 140806917 -21793013 - MLT1A2 LTR MaLR 0 374 314 2315 68 24 3 chrX 140806917 140807210 -21792720 + AluY SINE Alu 1 299 -12 1711 169 55 44 chrX 140807210 140807513 -21792417 - MLT1A2 LTR MaLR -60 314 5 3091 81 36 42 chrX 140807513 140807910 -21792020 + MLT2A1 LTR ERVL 1 397 -47 279 0 0 0 chrX 140807910 140807941 -21791989 + (TG)n Simple_repeat Simple_repeat 2 32 0 3091 81 36 42 chrX 140807941 140807989 -21791941 + MLT2A1 LTR ERVL 397 444 0 452 293 141 21 chrX 140808098 140808289 -21791641 + MIR SINE MIR 33 246 -16 188 180 0 20 chrX 140808853 140808903 -21791027 + GA-rich Low_complexity Low_complexity 1 49 0 444 242 39 48 chrX 140809314 140809488 -21790442 - MIR SINE MIR -58 150 17 351 229 12 121 chrX 140809870 140810036 -21789894 + MER46C DNA MER2_type 1 148 -190 6267 54 1 6 chrX 140810137 140810951 -21788979 + L1P LINE L1 3062 3871 -2275 4487 152 92 51 chrX 140811029 140811044 -21788886 + L1MA7 LINE L1 5225 5238 -1053 825 140 34 62 chrX 140811044 140811222 -21788708 - L1MA9 LINE L1 0 6312 6140 4487 152 92 51 chrX 140811222 140812230 -21787700 + L1MA7 LINE L1 5238 6291 0 431 290 40 8 chrX 140812525 140812649 -21787281 + MIR SINE MIR 26 153 -109 1964 141 0 0 chrX 140812933 140813217 -21786713 - AluJb SINE Alu -28 284 1 258 313 17 26 chrX 140814149 140814264 -21785666 + L2 LINE L2 3191 3304 -9 1473 315 100 14 chrX 140816232 140817112 -21782818 + L2 LINE L2 2348 3304 -9 276 273 114 0 chrX 140820345 140820433 -21779497 - L2 LINE L2 -25 3288 3191 312 219 181 69 chrX 140820506 140820666 -21779264 - MER5B DNA MER1_type 0 178 1 462 287 30 61 chrX 140822040 140822204 -21777726 + MIR SINE MIR 39 197 -65 965 260 62 17 chrX 140822299 140822591 -21777339 - L2 LINE L2 0 3313 3009 206 209 0 23 chrX 140823787 140823830 -21776100 + MIR SINE MIR 19 60 -148 319 176 59 84 chrX 140823902 140823974 -21775956 + L1ME4a LINE L1 5982 6051 -70 2349 74 3 26 chrX 140823974 140824284 -21775646 - AluY SINE Alu -8 303 1 319 176 59 84 chrX 140824284 140824330 -21775600 + L1ME4a LINE L1 6051 6097 -24 346 325 71 19 chrX 140824352 140824506 -21775424 + MIR3 SINE MIR 41 202 -6 21 36 0 0 chrX 140824512 140824540 -21775390 + AT_rich Low_complexity Low_complexity 1 28 0 317 248 86 29 chrX 140824843 140824948 -21774982 - MIR SINE MIR -58 204 94 385 314 50 0 chrX 140825586 140825707 -21774223 + MIR SINE MIR 62 188 -74 22 35 0 0 chrX 140826633 140826662 -21773268 + AT_rich Low_complexity Low_complexity 1 29 0 256 293 121 20 chrX 140826700 140826799 -21773131 - MIR SINE MIR -153 109 1 2648 81 3 3 chrX 140827204 140827539 -21772391 + L1PA13 LINE L1 5827 6161 -2 192 305 59 51 chrX 140828494 140828612 -21771318 - MER5A DNA MER1_type -35 154 36 2143 78 89 0 chrX 140829090 140829371 -21770559 - AluSg SINE Alu -4 306 1 234 91 0 0 chrX 140829479 140829512 -21770418 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 704 61 10 0 chrX 140829521 140829619 -21770311 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 1137 259 91 37 chrX 140830847 140831230 -21768700 + LTR16C LTR ERVL 88 491 0 225 244 47 23 chrX 140832181 140832267 -21767663 - MER117 DNA MER1_type -109 88 1 425 349 72 6 chrX 140832648 140832814 -21767116 - MIR3 SINE MIR -22 186 10 1469 217 43 27 chrX 140833085 140833453 -21766477 + MLT1A2 LTR MaLR 1 374 0 480 312 55 91 chrX 140834462 140834770 -21765160 - L2 LINE L2 -7 3265 2969 290 248 49 34 chrX 140834964 140835235 -21764695 + L1MD2 LINE L1 5081 5360 -794 607 186 0 0 chrX 140835290 140835403 -21764527 + L1MD2 LINE L1 5551 5663 -696 1422 266 80 6 chrX 140835439 140835947 -21763983 + L1MD2 LINE L1 5810 6357 -2 256 341 115 34 chrX 140836088 140836296 -21763634 + MIR SINE MIR 11 235 -27 722 283 77 20 chrX 140836817 140837064 -21762866 + MIR SINE MIR 2 262 0 189 139 0 0 chrX 140837879 140837922 -21762008 + (A)n Simple_repeat Simple_repeat 1 43 0 395 351 184 10 chrX 140838340 140838819 -21761111 + L2 LINE L2 2158 2719 -595 573 307 35 47 chrX 140839564 140839818 -21760112 + L2 LINE L2 2814 3064 -249 1023 226 11 26 chrX 140840003 140840269 -21759661 - MLT1K LTR MaLR 0 588 327 228 320 0 0 chrX 140840274 140840324 -21759606 - L2 LINE L2 -61 3211 3162 307 317 73 39 chrX 140841013 140841245 -21758685 - MIR SINE MIR -12 250 5 955 311 34 70 chrX 140842150 140842578 -21757352 - L2 LINE L2 -2 3311 2900 2157 123 0 10 chrX 140842578 140842887 -21757043 + AluSx SINE Alu 1 306 -6 955 311 34 70 chrX 140842887 140842928 -21757002 - L2 LINE L2 -413 2900 2859 213 94 0 0 chrX 140843101 140843133 -21756797 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 185 304 0 0 chrX 140843555 140843601 -21756329 - L2 LINE L2 -4 3268 3223 239 155 155 48 chrX 140843945 140844048 -21755882 + L1ME4a LINE L1 5833 5946 -175 73 12 0 0 chrX 140844162 140844242 -21755688 + AT_rich Low_complexity Low_complexity 1 80 0 180 291 9 82 chrX 140844587 140844697 -21755233 - L3 LINE CR1 -25 1552 1451 342 61 0 0 chrX 140845143 140845192 -21754738 + (TG)n Simple_repeat Simple_repeat 2 50 0 206 267 191 29 chrX 140845448 140845553 -21754377 + L2 LINE L2 3178 3299 -14 432 0 0 0 chrX 140845762 140845810 -21754120 + (TG)n Simple_repeat Simple_repeat 1 48 0 1882 108 0 90 chrX 140848206 140848539 -21751391 + AluSg SINE Alu 1 303 -7 363 23 0 0 chrX 140848611 140848655 -21751275 + (TG)n Simple_repeat Simple_repeat 2 45 0 235 216 39 0 chrX 140848857 140848908 -21751022 + MIR SINE MIR 49 101 -107 192 379 0 0 chrX 140849060 140849118 -21750812 + L2 LINE L2 3128 3185 -87 215 345 0 0 chrX 140849726 140849784 -21750146 + L2 LINE L2 3128 3185 -87 535 256 107 19 chrX 140851547 140851762 -21748168 - L1ME1 LINE L1 -18 6148 5915 394 314 138 0 chrX 140852247 140852406 -21747524 + MIR SINE MIR 82 262 0 315 339 47 47 chrX 140852429 140852556 -21747374 + L2 LINE L2 3119 3245 -27 214 175 0 0 chrX 140852583 140852623 -21747307 - L2 LINE L2 0 3313 3274 285 374 52 9 chrX 140853347 140853462 -21746468 + L2 LINE L2 3149 3268 -4 190 358 32 0 chrX 140853538 140853633 -21746297 + L2 LINE L2 3173 3270 -2 346 254 85 146 chrX 140853767 140854262 -21745668 - L2 LINE L2 -1060 2254 1790 5767 118 15 14 chrX 140855318 140856874 -21743056 - L1PA15 LINE L1 -1 6164 4607 3419 185 20 0 chrX 140856876 140857568 -21742362 + L1PA15 LINE L1 3896 4601 -1545 547 281 41 4 chrX 140858028 140858215 -21741715 - MIR SINE MIR -54 208 15 426 314 41 0 chrX 140860022 140860143 -21739787 + MIR3 SINE MIR 6 131 -77 195 277 0 0 chrX 140860549 140860596 -21739334 + MIR3 SINE MIR 151 197 -11 734 276 89 22 chrX 140861914 140862139 -21737791 + MIR SINE MIR 11 250 -12 234 284 0 95 chrX 140862434 140862550 -21737380 + MIR SINE MIR 102 206 -56 471 331 44 14 chrX 140863228 140863461 -21736469 + MIR3 SINE MIR 6 253 -9 1814 158 10 45 chrX 140863639 140864037 -21735893 + MLT1B LTR MaLR 7 390 0 328 210 185 0 chrX 140864875 140864956 -21734974 - MIR SINE MIR -83 179 84 1605 179 63 47 chrX 140865104 140865550 -21734380 - MLT1C LTR MaLR -9 458 6 672 325 45 8 chrX 140866866 140867112 -21732818 - MIR SINE MIR -1 261 7 2596 229 48 28 chrX 140867225 140867796 -21732134 + L1ME2 LINE L1 5041 5655 -509 7590 42 2 0 chrX 140867796 140869497 -21730433 + L1PA4 LINE L1 4452 6155 0 2596 229 48 28 chrX 140869497 140869999 -21729931 + L1ME2 LINE L1 5655 6145 -19 266 0 29 0 chrX 140870003 140870037 -21729893 + (GA)n Simple_repeat Simple_repeat 1 35 0 206 254 55 18 chrX 140870051 140870106 -21729824 + MIR SINE MIR 20 76 -186 * 407 291 0 43 chrX 140870103 140870220 -21729710 - L2 LINE L2 -1 3312 3201 387 301 18 9 chrX 140870337 140870450 -21729480 + MIR SINE MIR 73 186 -76 310 322 18 53 chrX 140870908 140871079 -21728851 + MER5A DNA MER1_type 17 181 -8 185 318 54 54 chrX 140871099 140871247 -21728683 - MIR3 SINE MIR -49 159 12 647 275 16 16 chrX 140871346 140871535 -21728395 - MIR SINE MIR -70 192 4 417 298 15 15 chrX 140872413 140872544 -21727386 + MIR3 SINE MIR 33 163 -45 202 204 45 0 chrX 140872973 140873017 -21726913 + GA-rich Low_complexity Low_complexity 1 46 0 28930 70 17 10 chrX 140873348 140877497 -21722433 - L1PA5 LINE L1 -1412 4734 559 7094 56 1 1 chrX 140877498 140878915 -21721015 + L1PA5 LINE L1 4739 6154 0 525 143 48 0 chrX 140879533 140879617 -21720313 - FLAM_A SINE Alu -22 120 33 286 149 43 11 chrX 140879781 140879842 -21720088 + MIR SINE MIR 106 168 -94 218 250 0 0 chrX 140879846 140879898 -21720032 - L2 LINE L2 -7 3306 3255 186 203 17 68 chrX 140880118 140880177 -21719753 - L2 LINE L2 -338 2976 2921 257 320 13 0 chrX 140880194 140880272 -21719658 + MER58 DNA MER1_type 1 79 -136 2379 166 28 5 chrX 140880450 140880872 -21719058 - MSTB1 LTR MaLR 0 432 1 677 280 142 20 chrX 140881043 140881339 -21718591 + L2 LINE L2 2940 3271 -1 909 203 17 11 chrX 140881537 140881714 -21718216 - MER45A DNA AcHobo 0 178 1 957 90 0 0 chrX 140881894 140882027 -21717903 + MLT2A2 LTR ERVL 1 133 -320 4154 102 9 17 chrX 140882027 140882671 -21717259 + THE1C-int LTR MaLR 942 1580 0 1899 134 73 25 chrX 140882671 140883029 -21716901 + THE1C LTR MaLR 1 375 0 260 384 67 12 chrX 140883822 140883986 -21715944 - MIR3 SINE MIR -25 183 11 183 204 0 0 chrX 140884320 140884364 -21715566 + CT-rich Low_complexity Low_complexity 2 45 0 449 271 8 17 chrX 140884776 140884894 -21715036 + L2 LINE L2 3179 3295 -18 380 333 124 44 chrX 140884948 140885401 -21714529 - L2 LINE L2 -463 2851 2363 483 319 9 0 chrX 140886076 140886192 -21713738 + L2 LINE L2 3147 3263 -9 215 286 71 12 chrX 140886245 140886329 -21713601 - MIR SINE MIR -173 89 1 782 266 62 9 chrX 140887052 140887278 -21712652 + MIR SINE MIR 25 262 0 227 122 0 0 chrX 140887289 140887330 -21712600 - L1MA7 LINE L1 0 6291 6251 248 206 137 10 chrX 140887367 140887469 -21712461 - L1M4 LINE L1 -841 5305 5191 4774 147 65 17 chrX 140887489 140887964 -21711966 - L1MA6 LINE L1 0 6300 5849 207 0 0 0 chrX 140887964 140887987 -21711943 + (TG)n Simple_repeat Simple_repeat 2 24 0 4774 147 65 17 chrX 140887987 140888264 -21711666 - L1MA6 LINE L1 -451 5849 5587 2394 73 0 3 chrX 140888264 140888564 -21711366 - AluY SINE Alu -12 299 1 4774 147 65 17 chrX 140888564 140888805 -21711125 - L1MA6 LINE L1 -713 5587 5258 3872 220 32 3 chrX 140888815 140889826 -21710104 - L1M4 LINE L1 -2886 3260 2221 770 227 91 19 chrX 140889828 140890109 -21709821 + MSTC LTR MaLR 87 428 0 229 297 50 79 chrX 140890696 140890797 -21709133 - L2 LINE L2 -27 3245 3148 595 254 44 73 chrX 140891062 140891310 -21708620 - MIR SINE MIR -21 241 1 248 0 0 0 chrX 140891342 140891371 -21708559 - L1P2 LINE L1 -382 5772 5744 643 25 0 0 chrX 140891371 140891451 -21708479 + L1PA5 LINE L1 6074 6153 -1 2774 137 2 2 chrX 140892178 140892615 -21707315 + L1PB3 LINE L1 5718 6154 0 741 214 0 107 chrX 140893783 140894017 -21705913 - MER3 DNA MER1_type 0 209 1 2589 30 0 0 chrX 140894174 140894469 -21705461 - AluY SINE Alu -16 295 1 550 227 196 36 chrX 140894521 140894715 -21705215 - MIR SINE MIR 0 262 38 309 358 20 34 chrX 140895149 140895297 -21704633 + MIR3 SINE MIR 17 162 -46 381 55 0 0 chrX 140895317 140895372 -21704558 - L1PA3 LINE L1 0 6155 6101 461 299 0 0 chrX 140895445 140895572 -21704358 + Charlie2b DNA MER1_type 172 298 -2564 504 167 44 9 chrX 140895599 140895713 -21704217 + Charlie2b DNA MER1_type 567 684 -2098 785 226 0 0 chrX 140895767 140895935 -21703995 + Charlie2a DNA MER1_type 1498 1665 -1197 369 209 11 126 chrX 140895921 140896103 -21703827 + Charlie2a DNA MER1_type 2700 2860 -2 * 198 0 0 0 chrX 140896583 140896605 -21703325 + (T)n Simple_repeat Simple_repeat 1 22 0 240 307 74 113 chrX 140896813 140897226 -21702704 - L2 LINE L2 0 3272 2877 351 0 0 0 chrX 140897226 140897265 -21702665 + (CA)n Simple_repeat Simple_repeat 2 40 0 240 307 74 113 chrX 140897265 140897310 -21702620 - L2 LINE L2 -395 2877 2832 472 320 8 0 chrX 140898613 140898741 -21701189 + MIR3 SINE MIR 15 143 -65 2566 172 16 22 chrX 140898741 140899356 -21700574 - L1MB1 LINE L1 -735 5433 4821 2252 167 0 5 chrX 140899354 140899756 -21700174 + L1MB1 LINE L1 5414 5813 -355 * 579 144 6 120 chrX 140899754 140899921 -21700009 + L1MB1 LINE L1 6016 6163 -5 * 1891 138 0 25 chrX 140900037 140900320 -21699610 + AluSx SINE Alu 5 280 -32 1193 95 0 6 chrX 140900328 140900507 -21699423 + (GAA)n Simple_repeat Simple_repeat 1 178 0 799 150 6 12 chrX 140900507 140900667 -21699263 + GA-rich Low_complexity Low_complexity 2 160 0 243 0 0 0 chrX 140900722 140900749 -21699181 + (TG)n Simple_repeat Simple_repeat 2 28 0 188 290 48 16 chrX 140901237 140901299 -21698631 - MIR SINE MIR -123 85 22 655 317 27 0 chrX 140901915 140902101 -21697829 - MIR SINE MIR -47 215 25 276 316 105 18 chrX 140902216 140902330 -21697600 - MIR3 SINE MIR -38 170 47 707 208 0 0 chrX 140902477 140902597 -21697333 - FLAM_A SINE Alu -13 120 1 22 35 0 0 chrX 140903379 140903408 -21696522 + AT_rich Low_complexity Low_complexity 1 29 0 263 330 37 26 chrX 140903976 140904167 -21695763 + L2 LINE L2 2043 2235 -1079 217 227 0 0 chrX 140904250 140904294 -21695636 + L2 LINE L2 3270 3313 0 236 247 67 27 chrX 140905516 140905666 -21694264 + L1ME LINE L1 5729 5884 -237 42 0 0 0 chrX 140906210 140906252 -21693678 + AT_rich Low_complexity Low_complexity 1 42 0 2379 101 19 27 chrX 140906331 140906698 -21693232 - THE1B LTR MaLR 0 364 1 201 291 91 0 chrX 140906698 140906753 -21693177 - MER91A DNA MER1_type -4 186 127 479 297 58 0 chrX 140906784 140906922 -21693008 - MER91A DNA MER1_type -25 171 26 521 227 28 74 chrX 140907291 140907467 -21692463 + MIR3 SINE MIR 41 208 0 956 247 45 47 chrX 140907775 140908016 -21691914 - L1MC/D LINE L1 -804 5342 5354 204 111 0 0 chrX 140908016 140908052 -21691878 + (TG)n Simple_repeat Simple_repeat 1 36 0 956 247 45 47 chrX 140908052 140908449 -21691481 - L1MC/D LINE L1 -791 5355 4959 3026 207 31 24 chrX 140908479 140908522 -21691408 + L1MC4a LINE L1 7015 7056 -752 198 71 0 0 chrX 140908522 140908550 -21691380 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3026 207 31 24 chrX 140908550 140909339 -21690591 + L1MC4a LINE L1 7056 7808 0 330 276 38 123 chrX 140909535 140909796 -21690134 + MIR SINE MIR 2 240 -22 1502 199 52 28 chrX 140909987 140910349 -21689581 - MLT1A2 LTR MaLR 0 374 4 22 70 0 0 chrX 140910380 140910423 -21689507 + AT_rich Low_complexity Low_complexity 1 43 0 1915 187 25 117 chrX 140910803 140911222 -21688708 + L1M1 LINE L1 12 369 -7196 4140 93 23 7 chrX 140911222 140911825 -21688105 - L1PA14 LINE L1 -3 6158 5546 1915 187 25 117 chrX 140911825 140911960 -21687970 + L1M1 LINE L1 369 515 -7050 32527 103 8 31 chrX 140911971 140918258 -21681672 + L1PA7 LINE L1 12 6152 -2 3341 201 3 2 chrX 140918332 140918949 -21680981 + L1M1 LINE L1 496 1113 -6452 5662 127 187 90 chrX 140918952 140920497 -21679433 - pTR5 LTR ERV1 0 2438 744 14019 159 22 10 chrX 140920497 140923555 -21676375 + L1M1 LINE L1 1109 4206 -3359 1030 163 5 0 chrX 140923578 140923768 -21676162 + L1PB1 LINE L1 7 197 -6666 13441 153 53 10 chrX 140923769 140929387 -21670543 + L1PB1 LINE L1 634 6528 -339 468 0 0 0 chrX 140929387 140929439 -21670491 + (TA)n Simple_repeat Simple_repeat 1 52 0 13441 153 53 10 chrX 140929439 140929795 -21670135 + L1PB1 LINE L1 6528 6867 0 10141 173 27 5 chrX 140929806 140931966 -21667964 + L1M1 LINE L1 4197 6408 -1157 323 315 110 7 chrX 140931964 140932110 -21667820 - L1ME LINE L1 -576 5545 5385 * 215 262 12 60 chrX 140932209 140932293 -21667637 - MIR SINE MIR -97 165 86 231 266 0 32 chrX 140932953 140933047 -21666883 + L1MC4 LINE L1 6616 6706 -1336 233 265 0 0 chrX 140933236 140933304 -21666626 - L1MC4 LINE L1 -1339 6703 6636 213 244 0 0 chrX 140933407 140933448 -21666482 - L2 LINE L2 -12 3260 3220 1378 144 4 40 chrX 140934707 140934984 -21664946 - L1MB8 LINE L1 -6 6172 5906 402 229 89 76 chrX 140934997 140935154 -21664776 - MIR SINE MIR -93 169 11 245 298 36 36 chrX 140935082 140935166 -21664764 + MIR3 SINE MIR 6 89 -119 * 213 330 0 23 chrX 140935254 140935342 -21664588 - L2 LINE L2 -869 2445 2360 213 200 0 0 chrX 140935640 140935680 -21664250 + (TG)n Simple_repeat Simple_repeat 1 40 0 192 283 54 54 chrX 140935944 140936036 -21663894 + MIR SINE MIR 77 168 -94 24 53 0 0 chrX 140937245 140937283 -21662647 + AT_rich Low_complexity Low_complexity 1 38 0 437 292 55 17 chrX 140937293 140937584 -21662346 + L1M4 LINE L1 2469 2770 -3376 425 248 37 0 chrX 140938809 140938918 -21661012 - MIR SINE MIR -32 230 118 1276 194 25 35 chrX 140939024 140939308 -21660622 - MER58B DNA MER1_type 0 341 61 201 213 0 0 chrX 140939368 140939415 -21660515 + GA-rich Low_complexity Low_complexity 2 48 0 311 277 96 58 chrX 140939420 140939608 -21660322 + L1ME4a LINE L1 5613 5807 -355 477 203 70 0 chrX 140939739 140939867 -21660063 + L1ME4a LINE L1 5984 6120 -1 326 354 75 17 chrX 140940444 140940684 -21659246 + L2 LINE L2 191 444 -2870 268 366 127 24 chrX 140940856 140941859 -21658071 + L2 LINE L2 892 1997 -1317 239 315 62 15 chrX 140942207 140942337 -21657593 + MIR SINE MIR 117 252 -10 353 294 90 61 chrX 140943861 140944171 -21655759 - L1ME4a LINE L1 -24 6097 5779 324 130 0 0 chrX 140944490 140944559 -21655371 + (TG)n Simple_repeat Simple_repeat 1 69 0 198 160 0 0 chrX 140944596 140944646 -21655284 + (TG)n Simple_repeat Simple_repeat 2 51 0 410 301 78 18 chrX 140944838 140945004 -21654926 + MIR SINE MIR 3 178 -84 792 284 63 84 chrX 140945047 140945571 -21654359 + MER34 LTR ERV1 1 513 -29 789 217 98 0 chrX 140945794 140945997 -21653933 - MER58A DNA MER1_type 0 224 2 929 237 151 67 chrX 140946352 140946803 -21653127 - MLT1H1 LTR MaLR 0 555 67 268 242 32 0 chrX 140947240 140947302 -21652628 - L3 LINE CR1 -8 1569 1506 505 209 0 82 chrX 140947373 140947507 -21652423 - MIR SINE MIR -70 192 70 252 0 0 0 chrX 140948935 140948963 -21650967 + (A)n Simple_repeat Simple_repeat 1 28 0 310 318 0 0 chrX 140949365 140949450 -21650480 - MIR SINE MIR -108 154 70 551 314 96 82 chrX 140950024 140950463 -21649467 - L2 LINE L2 -15 3257 2813 188 122 24 0 chrX 140950953 140950994 -21648936 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 22 56 0 0 chrX 140951025 140951061 -21648869 + AT_rich Low_complexity Low_complexity 1 36 0 255 223 184 39 chrX 140951230 140951333 -21648597 + MER5B DNA MER1_type 2 119 -59 2275 104 45 25 chrX 140952538 140952895 -21647035 - THE1B LTR MaLR 0 364 1 323 359 72 7 chrX 140953070 140953252 -21646678 + MIR SINE MIR 8 197 -62 2305 157 101 19 chrX 140953307 140953772 -21646158 - MLT1D LTR MaLR -2 503 1 1327 259 67 47 chrX 140953788 140954297 -21645633 + LTR33 LTR ERVL 1 519 -2 377 312 130 7 chrX 140954455 140954609 -21645321 + L2 LINE L2 2879 3051 -221 419 277 57 19 chrX 140954832 140954991 -21644939 - MIR SINE MIR -57 205 41 663 325 25 25 chrX 140955010 140955253 -21644677 - MIR SINE MIR 0 262 20 341 252 112 0 chrX 140955605 140955712 -21644218 + L2 LINE L2 3190 3308 -5 712 212 53 0 chrX 140955985 140956136 -21643794 - MIR SINE MIR -11 251 93 5161 86 7 6 chrX 140956432 140957140 -21642790 + L1PA11 LINE L1 5466 6174 0 22 0 0 0 chrX 140958531 140958553 -21641377 + AT_rich Low_complexity Low_complexity 1 22 0 204 387 75 0 chrX 140958799 140958905 -21641025 + L2 LINE L2 3151 3264 -8 2076 117 0 3 chrX 140959137 140959420 -21640510 - AluSx SINE Alu -30 282 1 2904 181 5 32 chrX 140959437 140960054 -21639876 + L1MB5 LINE L1 5561 6160 -14 2182 166 67 15 chrX 140960060 140960463 -21639467 - MSTA LTR MaLR -4 424 1 648 107 0 10 chrX 140960463 140960566 -21639364 - MSTA-int LTR MaLR 0 1651 1550 * 7827 171 35 2 chrX 140960565 140961916 -21638014 - MSTA-int LTR MaLR -256 1395 1 2225 158 61 19 chrX 140961916 140962327 -21637603 - MSTA LTR MaLR 0 428 1 250 233 33 92 chrX 140962697 140962817 -21637113 - L3 LINE CR1 -882 695 583 216 349 40 53 chrX 140963014 140963166 -21636764 - L3 LINE CR1 -939 638 489 722 103 113 113 chrX 140963183 140963306 -21636624 - L1MA7 LINE L1 -51 6240 6115 948 9 0 0 chrX 140963306 140963415 -21636515 - L1PA2 LINE L1 0 6155 6047 722 103 113 113 chrX 140963415 140963476 -21636454 - L1MA7 LINE L1 -175 6116 6056 502 318 36 15 chrX 140963479 140963674 -21636256 + MIR SINE MIR 58 256 -6 230 111 28 0 chrX 140963688 140963724 -21636206 - MADE1 DNA Mariner -43 37 1 288 224 79 46 chrX 140963751 140963903 -21636027 - L1M4 LINE L1 -777 5369 5213 21 0 0 0 chrX 140963905 140963926 -21636004 + AT_rich Low_complexity Low_complexity 1 21 0 437 317 123 40 chrX 140964109 140964964 -21634966 - L1M4 LINE L1 -1221 4925 4000 948 181 6 0 chrX 140965011 140965188 -21634742 + L1MA4 LINE L1 5880 6057 -243 443 289 7 35 chrX 140967510 140967652 -21632278 - MIR3 SINE MIR -68 140 3 24 53 0 0 chrX 140968011 140968049 -21631881 + AT_rich Low_complexity Low_complexity 1 38 0 3760 102 66 9 chrX 140968123 140968701 -21631229 - HSMAR2 DNA Mariner -1 1301 691 211 172 0 35 chrX 140968713 140968771 -21631159 + T-rich Low_complexity Low_complexity 5 60 0 2182 132 20 6 chrX 140968771 140969128 -21630802 - L1PB1 LINE L1 -8 6143 5782 5702 172 7 33 chrX 140969154 140970025 -21629905 - L1PB1 LINE L1 -493 5658 4766 2574 39 7 3 chrX 140970025 140970330 -21629600 - AluY SINE Alu -5 306 1 5702 172 7 33 chrX 140970330 140970769 -21629161 - L1PB1 LINE L1 -1385 4766 4404 528 93 0 0 chrX 140970769 140970844 -21629086 + (TTGTG)n Simple_repeat Simple_repeat 4 78 0 5702 172 7 33 chrX 140970844 140971213 -21628717 - L1PB1 LINE L1 -1747 4404 4027 4879 114 6 1 chrX 140971213 140971929 -21628001 - HSMAR2 DNA Mariner -582 720 2 182 180 82 66 chrX 140972103 140972164 -21627766 - MIR SINE MIR -83 179 118 481 249 130 32 chrX 140972860 140973045 -21626885 + MIR3 SINE MIR 3 205 -3 1997 211 23 31 chrX 140973247 140973936 -21625994 + L1MB7 LINE L1 5456 6139 -25 180 125 0 0 chrX 140974316 140974348 -21625582 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chrX 140975338 140975361 -21624569 + (GA)n Simple_repeat Simple_repeat 2 24 0 526 297 112 46 chrX 140975572 140976053 -21623877 - L1ME3A LINE L1 -280 5890 5378 289 289 17 54 chrX 140976039 140976278 -21623652 - L1ME3A LINE L1 -1560 4586 4357 * 4728 160 23 11 chrX 140977114 140977139 -21622791 - L1M2 LINE L1 -726 5565 5542 1351 208 88 59 chrX 140977139 140977581 -21622349 + MSTB2 LTR MaLR 1 455 -2 4728 160 23 11 chrX 140977581 140978633 -21621297 - L1M2 LINE L1 -749 5542 4469 391 273 80 50 chrX 140979290 140979590 -21620340 - L1ME3A LINE L1 -1986 4160 3852 827 297 40 20 chrX 140979689 140980188 -21619742 - L1ME3A LINE L1 -3436 2710 2202 2326 8 0 0 chrX 140980191 140980443 -21619487 - AluYb8 SINE Alu 0 318 67 3261 134 6 0 chrX 140980474 140981011 -21618919 - L1P LINE L1 -4390 1756 1217 13677 90 28 8 chrX 140981014 140983698 -21616232 + L1PA7 LINE L1 1940 4647 -1499 8334 30 0 0 chrX 140983687 140984746 -21615184 - L1PA2 LINE L1 -787 5359 4301 * 6810 16 1 4 chrX 140984746 140985534 -21614396 + L1PA2 LINE L1 5363 6153 -2 6799 62 11 10 chrX 140985528 140987048 -21612882 + L1PA7 LINE L1 4631 6153 -1 * 2294 95 17 0 chrX 140987643 140987939 -21611991 + AluSc SINE Alu 1 301 -8 1569 179 31 62 chrX 140987990 140988184 -21611746 + MLT1B LTR MaLR 13 191 -199 288 0 0 0 chrX 140988184 140988216 -21611714 + (CA)n Simple_repeat Simple_repeat 2 33 0 1569 179 31 62 chrX 140988216 140988411 -21611519 + MLT1B LTR MaLR 191 390 0 597 284 77 30 chrX 140988416 140988876 -21611054 - L1MEd LINE L1 -904 1586 1011 269 212 0 159 chrX 140989203 140989335 -21610595 + MIR SINE MIR 86 196 -66 273 128 0 0 chrX 140990349 140990388 -21609542 - MIR SINE MIR -87 121 83 * 508 352 86 41 chrX 140990384 140990874 -21609056 + L2 LINE L2 2540 3040 -273 185 278 69 28 chrX 140990937 140991009 -21608921 + L2 LINE L2 3239 3313 0 1742 10 0 0 chrX 140991736 140991929 -21608001 - AluYb8 SINE Alu -5 313 121 215 308 64 13 chrX 140993380 140993458 -21606472 + L2 LINE L2 3169 3250 -22 422 287 42 36 chrX 140993702 140993869 -21606061 - MIR SINE MIR -48 214 47 551 287 121 27 chrX 140995645 140995868 -21604062 + MIR SINE MIR 13 256 -6 345 82 0 0 chrX 140995874 140995923 -21604007 + (CAT)n Simple_repeat Simple_repeat 2 50 0 249 33 0 0 chrX 140995966 140995996 -21603934 + (CA)n Simple_repeat Simple_repeat 1 30 0 229 350 31 0 chrX 140996081 140996178 -21603752 + L2 LINE L2 1844 1943 -1371 4625 276 109 19 chrX 140996392 140998223 -21601707 + L2 LINE L2 1054 3068 -245 1296 252 63 16 chrX 140998282 140998710 -21601220 + MLT1C LTR MaLR 20 467 0 417 265 132 48 chrX 140998710 140998899 -21601031 + L2 LINE L2 3108 3312 -1 206 171 24 0 chrX 140998969 140999010 -21600920 + CT-rich Low_complexity Low_complexity 2 43 0 2270 92 13 3 chrX 140999497 140999803 -21600127 + AluSc SINE Alu 1 309 0 351 321 18 0 chrX 141000073 141000182 -21599748 + GA-rich Low_complexity Low_complexity 1 111 0 328 294 21 35 chrX 141000260 141000403 -21599527 + MIR3 SINE MIR 66 206 -2 605 283 99 18 chrX 141001146 141001369 -21598561 + MIR SINE MIR 20 260 -2 382 282 74 10 chrX 141001538 141001740 -21598190 + L1ME4a LINE L1 5643 5857 -264 23 0 0 0 chrX 141002233 141002256 -21597674 + AT_rich Low_complexity Low_complexity 1 23 0 722 219 0 12 chrX 141002264 141002428 -21597502 + L1MB5 LINE L1 5988 6149 -25 840 144 58 32 chrX 141002428 141002599 -21597331 + L1MA4 LINE L1 6099 6291 -9 23 0 0 0 chrX 141002655 141002678 -21597252 + AT_rich Low_complexity Low_complexity 1 23 0 190 167 273 0 chrX 141002856 141002922 -21597008 - MIR3 SINE MIR -2 206 123 2434 63 10 3 chrX 141002922 141003225 -21596705 + AluSp SINE Alu 1 305 -8 24 0 0 0 chrX 141003366 141003390 -21596540 + AT_rich Low_complexity Low_complexity 1 24 0 2042 171 43 3 chrX 141004665 141005015 -21594915 + MLT1A1 LTR MaLR 2 365 0 192 337 56 34 chrX 141005446 141005535 -21594395 + MIR SINE MIR 21 111 -151 511 296 26 0 chrX 141005562 141005714 -21594216 + MIR SINE MIR 97 252 -10 840 201 0 0 chrX 141005766 141005910 -21594020 - FRAM SINE Alu -32 144 1 352 262 145 56 chrX 141006030 141006244 -21593686 - MIR SINE MIR 0 262 30 1298 91 5 25 chrX 141006342 141006540 -21593390 - L1PA13 LINE L1 -2 6161 5968 2011 150 0 7 chrX 141006565 141006872 -21593058 + AluJb SINE Alu 1 305 -7 188 356 11 11 chrX 141007098 141007188 -21592742 - MIR3 SINE MIR -15 193 104 236 348 111 60 chrX 141007419 141007735 -21592195 - L2 LINE L2 -87 3185 2854 319 311 84 8 chrX 141009777 141009941 -21589989 - MIR SINE MIR -47 215 45 382 272 43 82 chrX 141010624 141010808 -21589122 + MIR3 SINE MIR 13 189 -19 582 293 99 5 chrX 141011439 141011630 -21588300 + MIR SINE MIR 40 248 -14 186 377 72 0 chrX 141012017 141012086 -21587844 - L2 LINE L2 -52 3220 3147 203 387 31 31 chrX 141012163 141012385 -21587545 - L2 LINE L2 -181 3091 2870 325 351 48 0 chrX 141012575 141012740 -21587190 + L1M4 LINE L1 3269 3441 -2705 707 271 109 45 chrX 141012796 141013117 -21586813 + L1M4 LINE L1 3547 3846 -2300 1501 108 40 5 chrX 141013117 141013339 -21586591 + MER30 DNA MER1_type 1 230 0 707 271 109 45 chrX 141013339 141013381 -21586549 + L1M4 LINE L1 3846 3884 -2262 472 136 0 11 chrX 141013381 141013469 -21586461 + L1PA16 LINE L1 6079 6165 -1 707 271 109 45 chrX 141013469 141013808 -21586122 + L1M4 LINE L1 3884 4295 -1851 24 32 0 0 chrX 141013876 141013907 -21586023 + AT_rich Low_complexity Low_complexity 1 31 0 268 53 0 0 chrX 141014180 141014218 -21585712 - L1P5 LINE L1 -662 5492 5455 3437 144 10 19 chrX 141014219 141014808 -21585122 + L1PA16 LINE L1 5583 6166 0 294 125 0 0 chrX 141015285 141015333 -21584597 + (A)n Simple_repeat Simple_repeat 1 48 0 441 36 0 0 chrX 141015949 141016004 -21583926 + (CA)n Simple_repeat Simple_repeat 2 56 0 227 214 14 0 chrX 141016242 141016312 -21583618 + GA-rich Low_complexity Low_complexity 3 73 0 23 33 0 0 chrX 141017500 141017530 -21582400 + AT_rich Low_complexity Low_complexity 1 30 0 349 358 3 9 chrX 141018118 141018256 -21581674 + MIR SINE MIR 33 171 -37 268 326 149 0 chrX 141018303 141018444 -21581486 + MIR SINE MIR 2 163 -99 252 335 48 39 chrX 141019043 141019152 -21580778 - L2 LINE L2 -556 2758 2645 2108 150 30 55 chrX 141019152 141019624 -21580306 + L1MB8 LINE L1 5713 6172 -6 252 335 48 39 chrX 141019624 141019720 -21580210 - L2 LINE L2 -669 2645 2551 875 278 31 8 chrX 141019818 141020073 -21579857 + MIR SINE MIR 1 261 -1 1595 196 11 14 chrX 141020464 141020821 -21579109 - MLT1A1 LTR MaLR 0 365 10 296 316 177 43 chrX 141021382 141021591 -21578339 + MIR SINE MIR 25 261 -1 393 308 0 30 chrX 141022128 141022282 -21577648 - MIR SINE MIR -63 145 41 242 340 75 0 chrX 141022949 141023043 -21576887 - L2 LINE L2 -50 3222 3122 221 228 0 35 chrX 141023485 141023542 -21576388 + GA-rich Low_complexity Low_complexity 3 57 0 343 278 204 6 chrX 141023772 141023947 -21575983 + MIR SINE MIR 9 210 -52 25 0 0 0 chrX 141024557 141024582 -21575348 + AT_rich Low_complexity Low_complexity 1 25 0 2746 65 3 14 chrX 141024582 141024951 -21574979 - L1PA10 LINE L1 -4 6164 5800 21 36 0 0 chrX 141025031 141025059 -21574871 + AT_rich Low_complexity Low_complexity 1 28 0 575 304 18 36 chrX 141025439 141025663 -21574267 + MIR SINE MIR 18 237 -25 339 276 38 9 chrX 141025732 141025837 -21574093 - MIR3 SINE MIR -25 183 76 398 136 0 0 chrX 141025928 141025987 -21573943 + MIR SINE MIR 92 150 -112 204 221 25 12 chrX 141026018 141026182 -21573748 + (TA)n Simple_repeat Simple_repeat 1 166 0 2127 118 14 39 chrX 141026199 141026563 -21573367 + THE1A LTR MaLR 1 355 0 919 286 9 4 chrX 141028021 141028248 -21571682 + MIR SINE MIR 20 247 -15 540 226 16 58 chrX 141028275 141028465 -21571465 - L1MB8 LINE L1 0 6178 5997 736 332 13 4 chrX 141028472 141028707 -21571223 + MIR SINE MIR 14 250 -12 312 227 91 0 chrX 141028799 141028865 -21571065 + L2 LINE L2 3242 3313 0 432 0 0 0 chrX 141028879 141028927 -21571003 + (TG)n Simple_repeat Simple_repeat 2 49 0 243 337 0 34 chrX 141029235 141029324 -21570606 - MIR SINE MIR -163 99 14 426 257 145 28 chrX 141029630 141029809 -21570121 + MIR3 SINE MIR 2 201 -7 180 217 0 117 chrX 141030226 141030286 -21569644 + MIR SINE MIR 49 101 -161 261 307 58 51 chrX 141030289 141030426 -21569504 - L2 LINE L2 -9 3263 3126 364 165 53 86 chrX 141030452 141030557 -21569373 + MIR SINE MIR 87 192 -62 336 248 51 64 chrX 141030655 141030812 -21569118 + L2 LINE L2 3158 3312 -1 425 195 32 104 chrX 141030983 141031137 -21568793 + L2 LINE L2 2292 2434 -880 379 251 98 79 chrX 141031379 141031594 -21568336 + MLT1J LTR MaLR 274 492 -19 445 211 93 67 chrX 141031626 141031820 -21568110 + L2 LINE L2 3113 3311 -2 266 146 42 0 chrX 141031949 141031997 -21567933 - L2 LINE L2 -9 3304 3255 245 243 0 29 chrX 141032936 141033006 -21566924 - MIR SINE MIR -6 256 189 983 205 5 34 chrX 141033042 141033247 -21566683 + MER20 DNA MER1_type 1 199 -20 190 259 111 0 chrX 141033272 141033326 -21566604 - MIR SINE MIR -62 146 87 181 164 18 18 chrX 141033330 141033385 -21566545 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 484 183 0 0 chrX 141034116 141034198 -21565732 - Tigger5 DNA MER2_type 0 2323 2242 463 182 0 0 chrX 141034188 141034265 -21565665 + Tigger5 DNA MER2_type 2242 2318 -5 * 529 177 0 0 chrX 141034266 141034345 -21565585 - Tigger5 DNA MER2_type -2244 79 1 836 193 25 35 chrX 141034677 141034874 -21565056 + AluJo SINE Alu 29 223 -89 1016 160 61 28 chrX 141034919 141035100 -21564830 + AluJo SINE Alu 95 281 -31 816 268 74 4 chrX 141035262 141035493 -21564437 - MIR SINE MIR -12 250 4 780 230 35 65 chrX 141035673 141035814 -21564116 - MIR SINE MIR -37 225 92 1949 137 66 41 chrX 141035814 141036178 -21563752 + THE1C LTR MaLR 1 373 -2 780 230 35 65 chrX 141036178 141036266 -21563664 - MIR SINE MIR -170 92 3 919 218 16 5 chrX 141036274 141036467 -21563463 - MIR SINE MIR -62 200 6 1589 179 26 0 chrX 141037322 141037595 -21562335 - AluJo SINE Alu -27 285 6 2541 201 24 22 chrX 141037595 141038146 -21561784 - MER74A LTR ERVL -6 552 1 804 261 101 8 chrX 141038298 141038536 -21561394 + L2 LINE L2 1825 2084 -1230 1907 252 99 26 chrX 141038545 141038775 -21561155 + L2 LINE L2 2312 2524 -789 1293 163 5 27 chrX 141038775 141038996 -21560934 - MER20 DNA MER1_type -3 216 1 1907 252 99 26 chrX 141038996 141039683 -21560247 + L2 LINE L2 2524 3307 -6 2726 184 21 34 chrX 141039699 141040225 -21559705 + LTR53 LTR ERVL 1 519 0 540 255 56 43 chrX 141040262 141040493 -21559437 - L3 LINE CR1 -309 1268 1035 410 264 94 31 chrX 141040481 141040640 -21559290 + MIR SINE MIR 19 187 -75 * 306 256 12 0 chrX 141041884 141041966 -21557964 + MIR SINE MIR 79 161 -101 819 206 7 0 chrX 141041999 141042145 -21557785 + MER58B DNA MER1_type 194 340 -1 384 328 26 0 chrX 141042149 141042265 -21557665 + L2 LINE L2 2959 3077 -195 197 317 125 10 chrX 141043015 141043119 -21556811 + MIR SINE MIR 45 160 -102 405 333 78 0 chrX 141044496 141044625 -21555305 + MIR SINE MIR 49 187 -75 329 244 193 0 chrX 141044637 141044756 -21555174 - L2 LINE L2 0 3313 3172 429 70 0 0 chrX 141045032 141045089 -21554841 + (CA)n Simple_repeat Simple_repeat 2 58 0 234 123 14 55 chrX 141045107 141045180 -21554750 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 249 322 78 0 chrX 141045200 141045290 -21554640 + MER5B DNA MER1_type 77 173 -5 184 289 36 24 chrX 141045873 141045956 -21553974 - L2 LINE L2 -9 3304 3221 498 295 40 19 chrX 141046019 141046341 -21553589 - L1M4 LINE L1 -1471 4675 4347 284 200 0 0 chrX 141046454 141046499 -21553431 + L2 LINE L2 3201 3245 -27 393 316 100 34 chrX 141046733 141047084 -21552846 - L1M4 LINE L1 -2194 3952 3579 594 279 45 6 chrX 141047101 141047280 -21552650 + MIR SINE MIR 3 188 -74 369 0 0 0 chrX 141047290 141047331 -21552599 + (TG)n Simple_repeat Simple_repeat 1 41 0 1713 170 45 3 chrX 141047374 141047663 -21552267 + AluJo SINE Alu 1 301 -11 315 283 129 72 chrX 141047736 141048015 -21551915 - L1M4 LINE L1 -2634 3512 3218 230 311 50 34 chrX 141048043 141048281 -21551649 - L1M4 LINE L1 -2982 3164 2923 517 201 166 7 chrX 141048928 141049067 -21550863 + MER103 DNA DNA 3 163 -3 21 0 0 0 chrX 141049252 141049273 -21550657 + AT_rich Low_complexity Low_complexity 1 21 0 406 351 156 36 chrX 141049464 141050193 -21549737 + L2 LINE L2 530 1346 -1968 331 304 110 31 chrX 141050231 141050422 -21549508 + L2 LINE L2 2854 3059 -213 194 331 83 41 chrX 141050473 141050594 -21549336 + L2 LINE L2 3146 3271 -1 1508 139 5 0 chrX 141050632 141050855 -21549075 - AluSq SINE Alu -89 224 1 309 353 74 42 chrX 141051905 141052095 -21547835 + L2 LINE L2 2966 3161 -111 1278 134 25 0 chrX 141052113 141052314 -21547616 - L1PB3 LINE L1 0 6154 5949 2975 204 37 2 chrX 141052373 141052916 -21547014 - MER68 LTR ERV1 0 562 1 304 361 66 14 chrX 141052946 141053159 -21546771 - MIR SINE MIR -34 228 5 225 313 73 21 chrX 141053770 141053866 -21546064 - L2 LINE L2 -22 3250 3150 875 280 4 12 chrX 141053983 141054233 -21545697 - MIR SINE MIR 0 262 15 388 271 31 30 chrX 141054679 141054823 -21545107 - MIR3 SINE MIR -76 132 8 2054 138 0 13 chrX 141054828 141055140 -21544790 - AluSx SINE Alu -4 308 1 226 349 47 0 chrX 141055596 141055682 -21544248 - L2 LINE L2 0 3272 3183 1286 254 56 119 chrX 141055788 141056946 -21542984 + L2 LINE L2 1992 3222 -91 473 0 18 0 chrX 141056946 141057003 -21542927 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 279 0 0 0 chrX 141057010 141057041 -21542889 + (CA)n Simple_repeat Simple_repeat 2 32 0 1286 254 56 119 chrX 141057041 141057279 -21542651 + L2 LINE L2 3228 3309 -4 363 339 183 30 chrX 141057277 141057780 -21542150 + L2 LINE L2 2679 3269 -3 * 625 278 67 16 chrX 141058461 141058655 -21541275 + MIR SINE MIR 4 207 -55 231 338 27 0 chrX 141058738 141058812 -21541118 + L2 LINE L2 2709 2784 -530 399 244 111 17 chrX 141060385 141060565 -21539365 + L2 LINE L2 2562 2758 -556 1382 157 14 136 chrX 141060708 141061121 -21538809 - Charlie1 DNA MER1_type -56 2705 2343 798 186 19 0 chrX 141061219 141061380 -21538550 + L1MA10 LINE L1 6169 6332 -2 7734 47 2 0 chrX 141061845 141063035 -21536895 + L1PA5 LINE L1 4960 6151 -3 417 129 0 0 chrX 141063046 141063108 -21536822 + L1PB1 LINE L1 6089 6150 -1 940 187 88 70 chrX 141063460 141063744 -21536186 - MLT1B LTR MaLR 0 390 102 246 90 0 194 chrX 141063744 141063811 -21536119 - MADE1 DNA Mariner -1 79 26 264 145 210 0 chrX 141063834 141063896 -21536034 - MLT1B LTR MaLR -371 96 22 201 74 0 0 chrX 141064512 141064539 -21535391 + (A)n Simple_repeat Simple_repeat 1 27 0 525 194 56 9 chrX 141066539 141066647 -21533283 - L2 LINE L2 -10 3262 3150 4592 157 93 38 chrX 141066945 141067948 -21531982 + MER106B DNA MER1_type 1 1058 -1 486 311 42 82 chrX 141068625 141069004 -21530926 + L2 LINE L2 2854 3217 -55 202 376 102 25 chrX 141069282 141069439 -21530491 + MIR3 SINE MIR 33 201 -7 1715 186 111 54 chrX 141069544 141069986 -21529944 + MLT1C LTR MaLR 1 467 0 617 276 21 66 chrX 141070749 141070992 -21528938 - MIR SINE MIR 0 262 31 368 242 22 0 chrX 141071950 141072041 -21527889 - MER69 DNA AcHobo 0 2526 2434 1096 227 151 20 chrX 141072211 141072510 -21527420 + MLT1E LTR MaLR 8 345 -248 189 262 0 0 chrX 141072615 141072657 -21527273 - MER5A DNA MER1_type -69 120 79 594 288 99 5 chrX 141072958 141073012 -21526918 - MIR SINE MIR -11 251 204 195 42 0 0 chrX 141073012 141073036 -21526894 + (TTA)n Simple_repeat Simple_repeat 2 25 0 594 288 99 5 chrX 141073036 141073193 -21526737 - MIR SINE MIR -58 204 20 1334 233 46 16 chrX 141073276 141073610 -21526320 + MSTD LTR MaLR 1 394 -2 525 183 0 11 chrX 141073610 141073703 -21526227 + MSTD-int LTR MaLR 2 93 -1642 5438 113 10 2 chrX 141073714 141074499 -21525431 + L1PA7 LINE L1 2 792 -5669 * 19941 104 4 7 chrX 141074486 141077386 -21522544 + L1PA7 LINE L1 1548 4440 -2017 9621 93 0 2 chrX 141077386 141079464 -21520466 + L1PA7 LINE L1 4383 6469 0 261 283 115 18 chrX 141079478 141079591 -21520339 + MLT1K LTR MaLR 391 514 -74 255 239 0 0 chrX 141079599 141079666 -21520264 + (CTA)n Simple_repeat Simple_repeat 1 67 0 1216 164 20 141 chrX 141079935 141080012 -21519918 - MLT2C1 LTR ERVL -86 311 226 1233 29 0 0 chrX 141080012 141080149 -21519781 - L1PA3 LINE L1 0 6155 6019 1216 164 20 141 chrX 141080149 141080318 -21519612 - MLT2C1 LTR ERVL -171 226 117 1570 184 14 0 chrX 141080318 141080636 -21519294 + AluJo SINE Alu 1 322 0 1216 164 20 141 chrX 141080636 141080741 -21519189 - MLT2C1 LTR ERVL -280 117 1 3425 234 39 45 chrX 141080822 141081748 -21518182 + MSTD-int LTR MaLR 90 1009 -726 1957 109 15 54 chrX 141081762 141082034 -21517896 + THE1C-int LTR MaLR 1308 1638 -97 2631 88 50 16 chrX 141082034 141082397 -21517533 + THE1C LTR MaLR 1 375 0 1957 109 15 54 chrX 141082397 141082492 -21517438 + THE1C-int LTR MaLR 1638 1735 0 614 184 0 10 chrX 141082495 141082598 -21517332 + MSTB2 LTR MaLR 15 116 -341 * 768 180 14 7 chrX 141082589 141082728 -21517202 + MSTB2 LTR MaLR 318 457 0 516 323 151 58 chrX 141082863 141083228 -21516702 + L2 LINE L2 2872 3270 -2 23 33 0 0 chrX 141084256 141084286 -21515644 + AT_rich Low_complexity Low_complexity 1 30 0 778 273 19 39 chrX 141084901 141085161 -21514769 - MIR SINE MIR -2 260 6 430 303 120 0 chrX 141085173 141085315 -21514615 - MER91A DNA MER1_type -5 191 33 820 181 76 21 chrX 141085386 141085530 -21514400 - FRAM SINE Alu -24 152 1 444 286 49 109 chrX 141086293 141086669 -21513261 + L2 LINE L2 2792 3143 -129 336 315 116 50 chrX 141086882 141087123 -21512807 + L2 LINE L2 2966 3222 -50 180 339 91 33 chrX 141088828 141088949 -21510981 - L2 LINE L2 -7 3306 3179 278 287 65 61 chrX 141089113 141089245 -21510685 + MIR SINE MIR 32 166 -64 209 128 26 0 chrX 141089275 141089314 -21510616 + (TA)n Simple_repeat Simple_repeat 2 41 0 24304 89 4 7 chrX 141089315 141093533 -21506397 - L1PA7 LINE L1 -5 6464 2262 3851 106 34 0 chrX 141093524 141094083 -21505847 - L1PA7 LINE L1 -5883 578 1 * 304 198 99 12 chrX 141094161 141094242 -21505688 + MIR3 SINE MIR 89 176 -32 338 40 20 20 chrX 141095054 141095104 -21504826 + MADE1 DNA Mariner 31 80 0 318 301 0 0 chrX 141095378 141095465 -21504465 + MIR SINE MIR 41 127 -81 234 236 0 0 chrX 141095523 141095578 -21504352 + MIR SINE MIR 134 188 -74 359 272 54 0 chrX 141095669 141095761 -21504169 + L2 LINE L2 3176 3272 0 312 302 38 38 chrX 141095828 141095934 -21503996 + L2 LINE L2 3167 3272 0 248 260 40 0 chrX 141097012 141097062 -21502868 - L2 LINE L2 -89 3183 3132 332 253 38 13 chrX 141097568 141097647 -21502283 - L2 LINE L2 -88 3184 3104 728 191 14 0 chrX 141097968 141098115 -21501815 - MIR SINE MIR 0 262 114 238 346 15 15 chrX 141098752 141098888 -21501042 - MIR SINE MIR -48 214 79 2376 184 26 10 chrX 141099271 141099689 -21500241 + MSTB LTR MaLR 1 425 -1 1028 257 56 18 chrX 141100313 141100537 -21499393 + L2 LINE L2 2960 3203 -110 282 56 0 0 chrX 141100537 141100573 -21499357 + (CA)n Simple_repeat Simple_repeat 2 37 0 1028 257 56 18 chrX 141100573 141100686 -21499244 + L2 LINE L2 3203 3310 -3 23 0 0 0 chrX 141101096 141101119 -21498811 + AT_rich Low_complexity Low_complexity 1 23 0 252 265 60 12 chrX 141102113 141102196 -21497734 - MIR SINE MIR -128 134 48 256 375 0 0 chrX 141102402 141102506 -21497424 + L2 LINE L2 2684 2787 -527 828 290 32 71 chrX 141102667 141103046 -21496884 + L2 LINE L2 2909 3272 0 504 341 142 25 chrX 141103785 141104152 -21495778 + L2 LINE L2 2862 3271 -1 347 264 86 21 chrX 141104775 141104915 -21495015 - L2 LINE L2 -14 3299 3151 234 0 0 0 chrX 141104973 141104999 -21494931 + (CA)n Simple_repeat Simple_repeat 1 26 0 2022 151 46 117 chrX 141105196 141105419 -21494511 + L1MB3 LINE L1 5639 5876 -307 351 115 0 0 chrX 141105419 141105476 -21494454 + MSTA LTR MaLR 363 424 -8 2022 151 46 117 chrX 141105476 141105774 -21494156 + L1MB3 LINE L1 5876 6180 -3 202 326 0 0 chrX 141106208 141106257 -21493673 + MIR3 SINE MIR 139 187 -21 569 245 56 0 chrX 141106402 141106545 -21493385 + MIR3 SINE MIR 49 199 -9 501 197 25 25 chrX 141106545 141106667 -21493263 + L1MB3 LINE L1 6052 6173 -10 28 29 0 0 chrX 141106673 141106708 -21493222 + AT_rich Low_complexity Low_complexity 1 35 0 247 306 37 19 chrX 141108277 141108385 -21491545 - MER5A DNA MER1_type 0 189 80 217 291 50 89 chrX 141108280 141108459 -21491471 + MER5A DNA MER1_type 18 189 0 * 341 254 112 53 chrX 141108467 141108636 -21491294 - MER5A DNA MER1_type 0 189 11 489 241 19 9 chrX 141108836 141108944 -21490986 + L2 LINE L2 3204 3312 -1 215 130 37 19 chrX 141109628 141109682 -21490248 + (TTA)n Simple_repeat Simple_repeat 2 56 0 335 202 91 0 chrX 141110222 141110321 -21489609 + L1ME4a LINE L1 6013 6120 -1 312 266 160 72 chrX 141110590 141110921 -21489009 + L1M2 LINE L1 431 790 -6059 301 234 135 102 chrX 141112565 141112809 -21487121 + MIR SINE MIR 5 256 -6 426 278 62 28 chrX 141113115 141113291 -21486639 + MIR SINE MIR 66 247 -15 970 197 26 52 chrX 141113576 141113617 -21486313 + L1ME2 LINE L1 5938 5979 -185 2384 96 0 6 chrX 141113617 141113929 -21486001 + AluSx SINE Alu 1 310 -2 970 197 26 52 chrX 141113929 141114120 -21485810 + L1ME2 LINE L1 5979 6164 0 202 232 0 43 chrX 141118622 141118691 -21481239 + GA-rich Low_complexity Low_complexity 2 67 0 220 250 0 0 chrX 141119408 141119456 -21480474 + G-rich Low_complexity Low_complexity 1 48 0 246 246 0 16 chrX 141119571 141119632 -21480298 + (CA)n Simple_repeat Simple_repeat 1 60 0 213 39 0 0 chrX 141120220 141120246 -21479684 + (CCG)n Simple_repeat Simple_repeat 3 28 0 1052 86 29 6 chrX 141121750 141121780 -21478150 + (GAAA)n Simple_repeat Simple_repeat 1 208 0 1052 86 29 6 chrX 141121780 141121954 -21477976 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 294 29 0 0 chrX 141122016 141122051 -21477879 + (GGGAA)n Simple_repeat Simple_repeat 2 36 0 572 138 0 0 chrX 141122730 141122810 -21477120 + L1PA16 LINE L1 6073 6152 -14 743 249 23 28 chrX 141122852 141123069 -21476861 - MIR SINE MIR -10 252 37 1173 277 29 55 chrX 141125179 141125703 -21474227 + MLT1H1 LTR MaLR 43 552 -3 877 223 152 42 chrX 141125760 141126220 -21473710 + MLT1G LTR MaLR 92 588 -2 240 290 14 103 chrX 141126895 141127040 -21472890 + L2 LINE L2 3165 3296 -17 700 231 15 46 chrX 141127105 141127300 -21472630 - MIR SINE MIR -72 190 2 1169 266 100 8 chrX 141127502 141127882 -21472048 + LTR16A LTR ERVL 1 415 -35 216 390 25 8 chrX 141128889 141129007 -21470923 - MIR SINE MIR -123 139 20 595 235 11 87 chrX 141129260 141129443 -21470487 + MLT2E LTR ERVL 1 169 -459 479 311 36 32 chrX 141129452 141129729 -21470201 + MLT2E LTR ERVL 351 628 0 344 317 86 36 chrX 141130429 141130724 -21469206 + L1MEd LINE L1 866 1256 -1234 26 30 0 0 chrX 141130780 141130813 -21469117 + AT_rich Low_complexity Low_complexity 1 33 0 2286 162 26 3 chrX 141130831 141131309 -21468621 + L1PA16 LINE L1 5640 6153 -1 280 259 160 61 chrX 141131311 141131453 -21468477 + L1MC/D LINE L1 2841 2968 -3161 2208 43 4 0 chrX 141131453 141131711 -21468219 - L1PA8 LINE L1 0 6172 5914 280 259 160 61 chrX 141131711 141132073 -21467857 + L1MC/D LINE L1 2968 3395 -2734 262 280 45 15 chrX 141132275 141132407 -21467523 + L1MC/D LINE L1 3617 3752 -2377 2413 59 0 13 chrX 141132408 141132712 -21467218 - AluY SINE Alu -11 300 1 475 285 132 41 chrX 141132854 141133194 -21466736 + MLT1H LTR MaLR 179 549 0 539 320 70 31 chrX 141133194 141134334 -21465596 + L1MC/D LINE L1 3783 4956 -1173 752 318 21 51 chrX 141134563 141135129 -21464801 + L1MC/D LINE L1 5258 5806 -1985 665 217 91 0 chrX 141135209 141135352 -21464578 - MIR SINE MIR -39 223 68 258 105 0 0 chrX 141135432 141135470 -21464460 + (TA)n Simple_repeat Simple_repeat 2 39 0 22 70 0 0 chrX 141135530 141135573 -21464357 + AT_rich Low_complexity Low_complexity 1 43 0 397 256 0 68 chrX 141136342 141136459 -21463471 + MER5A DNA MER1_type 68 176 -13 332 286 52 73 chrX 141136767 141136959 -21462971 - MER5A DNA MER1_type 0 189 2 227 287 3 0 chrX 141137459 141137514 -21462416 + L3 LINE CR1 1521 1579 -4 306 0 0 0 chrX 141139177 141139211 -21460719 + (CA)n Simple_repeat Simple_repeat 2 35 0 418 191 74 164 chrX 141139489 141139745 -21460185 - MER112 DNA MER1_type 0 260 28 464 330 115 9 chrX 141139856 141140074 -21459856 - MIR SINE MIR -4 258 18 274 303 53 0 chrX 141141847 141141923 -21458007 - L2 LINE L2 -2 3270 3191 910 249 120 14 chrX 141141938 141142356 -21457574 + L1MC5 LINE L1 7452 7913 -48 278 260 70 40 chrX 141142665 141142765 -21457165 - MIR SINE MIR -72 136 34 1259 136 0 123 chrX 141142983 141143291 -21456639 + MLT1B LTR MaLR 121 390 0 247 288 41 0 chrX 141143354 141143427 -21456503 - L2 LINE L2 -4 3309 3234 243 250 38 25 chrX 141143825 141143905 -21456025 - L2 LINE L2 -659 2655 2575 297 0 0 0 chrX 141144238 141144271 -21455659 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 342 0 0 0 chrX 141144270 141144308 -21455622 + (GA)n Simple_repeat Simple_repeat 1 38 0 1085 316 81 31 chrX 141144320 141145021 -21454909 - L2 LINE L2 -195 3077 2334 299 183 33 0 chrX 141145452 141145512 -21454418 - MIR SINE MIR -126 136 75 245 294 0 43 chrX 141145560 141145652 -21454278 + L2 LINE L2 3184 3271 -1 662 340 36 7 chrX 141146353 141146632 -21453298 - MLT1K LTR MaLR -290 298 12 1259 206 44 16 chrX 141146877 141147125 -21452805 + AluJo SINE Alu 47 301 -11 233 262 49 0 chrX 141147369 141147430 -21452500 + MIR SINE MIR 91 154 -108 437 344 36 31 chrX 141147757 141147949 -21451981 - MIR3 SINE MIR 0 208 16 237 300 0 0 chrX 141148266 141148326 -21451604 - MIR SINE MIR -22 240 181 255 311 37 127 chrX 141148542 141148557 -21451373 - L2 LINE L2 -6 3266 3251 357 117 0 0 chrX 141148557 141148617 -21451313 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 255 311 37 127 chrX 141148617 141148900 -21451030 - L2 LINE L2 -21 3251 2995 247 313 196 36 chrX 141149026 141149138 -21450792 + MIR SINE MIR 49 178 -84 1314 209 52 75 chrX 141149638 141150116 -21449814 - MLT1C LTR MaLR 0 467 1 591 314 55 1 chrX 141150238 141150424 -21449506 - MIR SINE MIR -33 229 37 495 314 0 23 chrX 141150433 141150605 -21449325 - MIR SINE MIR -13 249 82 362 286 155 10 chrX 141150650 141150860 -21449070 - MIR SINE MIR -2 260 16 414 121 0 0 chrX 141150986 141151052 -21448878 + (CAT)n Simple_repeat Simple_repeat 3 68 0 289 283 29 111 chrX 141151905 141152184 -21447746 + MLT1K LTR MaLR 315 570 -18 458 247 16 0 chrX 141152276 141152393 -21447537 - MIR SINE MIR -62 146 25 254 347 77 32 chrX 141152396 141152644 -21447286 + L2 LINE L2 2508 2766 -548 184 328 16 0 chrX 141153049 141153113 -21446817 - L2 LINE L2 -5 3267 3203 1116 213 32 0 chrX 141153130 141153346 -21446584 - MIR SINE MIR -31 231 9 10417 223 20 20 chrX 141153382 141157008 -21442922 + L1PA12 LINE L1 10 4696 -2888 13059 151 22 0 chrX 141157008 141160085 -21439845 + L1PA11 LINE L1 3059 6168 -6 405 135 34 0 chrX 141160085 141160174 -21439756 + (TA)n Simple_repeat Simple_repeat 1 92 0 208 376 18 9 chrX 141160292 141160359 -21439571 - L2 LINE L2 0 3313 3243 1890 212 102 13 chrX 141160359 141160821 -21439109 + MLT1D LTR MaLR 1 503 -2 208 376 18 9 chrX 141160821 141160862 -21439068 - L2 LINE L2 -70 3243 3204 400 301 0 0 chrX 141161305 141161408 -21438522 + MER117 DNA MER1_type 47 149 -48 1091 181 5 0 chrX 141161456 141161644 -21438286 - MER5A DNA MER1_type 0 189 1 322 279 29 39 chrX 141161706 141161810 -21438120 - MER5A DNA MER1_type -80 109 7 3842 178 24 6 chrX 141161899 141162612 -21437318 - MER44D DNA MER2_type -7 598 1 263 297 27 9 chrX 141162988 141163099 -21436831 + MER81 DNA DNA 1 113 -1 206 320 0 13 chrX 141163317 141163392 -21436538 + GA-rich Low_complexity Low_complexity 3 76 0 1310 98 128 0 chrX 141164224 141164428 -21435502 - MER30 DNA MER1_type 0 230 1 325 144 48 77 chrX 141165583 141165687 -21434243 + L1ME LINE L1 5572 5672 -449 3528 256 52 51 chrX 141165701 141165824 -21434106 + L1MCc LINE L1 24 145 -6278 2012 191 33 37 chrX 141165824 141166254 -21433676 - MSTB1 LTR MaLR -2 430 3 3528 256 52 51 chrX 141166254 141166736 -21433194 + L1MCc LINE L1 145 625 -5798 2129 156 0 0 chrX 141166736 141167044 -21432886 + AluSx SINE Alu 5 312 0 3528 256 52 51 chrX 141167044 141167460 -21432470 + L1MCc LINE L1 625 1039 -5384 2002 196 73 5 chrX 141167460 141167859 -21432071 - MSTB LTR MaLR 0 426 1 3528 256 52 51 chrX 141167859 141168278 -21431652 + L1MCc LINE L1 1039 1467 -4956 329 292 15 0 chrX 141168277 141168407 -21431523 + L1MCc LINE L1 2455 2586 -4536 * 331 391 40 36 chrX 141168418 141168720 -21431210 + L1MDa LINE L1 25 327 -6213 2430 239 91 38 chrX 141169248 141169923 -21430007 + L1MDa LINE L1 911 1636 -4904 2341 93 0 0 chrX 141169923 141170214 -21429716 + AluSg SINE Alu 1 291 -19 2430 239 91 38 chrX 141170214 141170757 -21429173 + L1MDa LINE L1 1636 2149 -4391 * 9642 227 47 25 chrX 141170752 141174628 -21425302 - L1MDa LINE L1 -2571 3969 12 973 260 20 5 chrX 141174628 141175024 -21424906 + L1MDa LINE L1 3149 3550 -2990 189 94 0 0 chrX 141175191 141175223 -21424707 + (T)n Simple_repeat Simple_repeat 1 32 0 189 107 0 0 chrX 141175277 141175305 -21424625 + (A)n Simple_repeat Simple_repeat 1 28 0 39831 58 3 1 chrX 141175456 141181576 -21418354 + L1PA5 LINE L1 11 6146 -8 35 24 0 0 chrX 141181576 141181618 -21418312 + AT_rich Low_complexity Low_complexity 1 42 0 627 286 133 17 chrX 141182440 141182674 -21417256 + MIR SINE MIR 2 262 0 2380 93 0 6 chrX 141182841 141183153 -21416777 + AluSg SINE Alu 1 310 0 679 298 19 23 chrX 141183242 141183504 -21416426 + MIR SINE MIR 2 262 0 1875 133 6 69 chrX 141183892 141184224 -21415706 - AluSx SINE Alu -1 311 1 2054 100 30 0 chrX 141184454 141184763 -21415167 - AluSx SINE Alu 0 320 4 22 0 0 0 chrX 141184870 141184892 -21415038 + AT_rich Low_complexity Low_complexity 1 22 0 2167 101 14 3 chrX 141185027 141185315 -21414615 + AluSx SINE Alu 9 299 -13 368 305 78 45 chrX 141185802 141186071 -21413859 + L1MEd LINE L1 145 422 -5783 798 291 76 18 chrX 141186620 141187199 -21412731 + L1MEd LINE L1 1008 1720 -856 600 195 208 7 chrX 141187402 141187551 -21412379 - MIR SINE MIR -82 180 2 312 364 66 21 chrX 141187625 141187911 -21412019 + L1MEd LINE L1 1929 2227 -4169 749 299 60 9 chrX 141187931 141188462 -21411468 + L1MEd LINE L1 2216 2773 -3442 1376 221 156 9 chrX 141188531 141189251 -21410679 - Charlie2 DNA MER1_type -3 2859 1980 3379 151 53 33 chrX 141189251 141189971 -21409959 + L1MA8 LINE L1 5529 6262 -29 2053 129 3 0 chrX 141189973 141190268 -21409662 - AluJo SINE Alu -13 299 4 34 55 0 0 chrX 141190274 141190329 -21409601 + AT_rich Low_complexity Low_complexity 1 55 0 231 189 75 0 chrX 141190369 141190422 -21409508 - Charlie2 DNA MER1_type -2634 148 92 32 0 0 0 chrX 141190518 141190550 -21409380 + AT_rich Low_complexity Low_complexity 1 32 0 13699 130 32 14 chrX 141190666 141193035 -21406895 - Tigger1 DNA MER2_type -5 2413 2 618 308 17 42 chrX 141193625 141193862 -21406068 + MIR SINE MIR 13 243 -19 6034 123 40 13 chrX 141193879 141195310 -21404620 + L1MA2 LINE L1 4838 6303 -1 437 261 155 22 chrX 141195464 141195690 -21404240 + MIR SINE MIR 4 259 -3 228 35 0 0 chrX 141195692 141195721 -21404209 + (CA)n Simple_repeat Simple_repeat 2 30 0 625 270 10 61 chrX 141195849 141196045 -21403885 + MER5A DNA MER1_type 4 189 0 266 288 30 0 chrX 141196274 141196340 -21403590 + L2 LINE L2 3140 3207 -65 321 211 68 116 chrX 141196851 141196998 -21402932 - L1MC4 LINE L1 -1 8041 7902 209 231 0 0 chrX 141196998 141197037 -21402893 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 391 220 50 10 chrX 141197083 141197183 -21402747 - L1MC4 LINE L1 -122 7920 7817 2319 150 40 7 chrX 141197188 141197633 -21402297 - L1MB3 LINE L1 -1 6680 6097 2332 66 7 0 chrX 141197633 141197920 -21402010 - AluSc SINE Alu -20 289 1 2319 150 40 7 chrX 141197920 141198176 -21401754 - L1MB3 LINE L1 -584 6097 5851 293 181 36 0 chrX 141198203 141198286 -21401644 - L1MB3 LINE L1 -1083 5561 5476 502 200 0 57 chrX 141198286 141198360 -21401570 + MER2 DNA MER2_type 1 69 -276 2541 48 0 10 chrX 141198360 141198674 -21401256 - AluY SINE Alu 0 311 1 502 200 0 57 chrX 141198674 141198704 -21401226 + MER2 DNA MER2_type 69 99 -246 734 231 172 12 chrX 141198731 141198789 -21401141 - L1MB3 LINE L1 -1166 5478 5431 2094 160 35 0 chrX 141198789 141199163 -21400767 + L1MA4 LINE L1 5907 6293 -7 734 231 172 12 chrX 141199163 141199429 -21400501 - L1MB3 LINE L1 -1213 5431 5102 824 201 104 0 chrX 141199429 141199593 -21400337 - AluJo SINE Alu -19 293 113 2871 232 39 21 chrX 141199593 141199949 -21399981 - L1MB3 LINE L1 -1555 5089 4741 2448 101 27 5 chrX 141199949 141200316 -21399614 - THE1C LTR MaLR 0 375 1 2871 232 39 21 chrX 141200316 141200678 -21399252 - L1MB3 LINE L1 -1903 4741 4349 1426 195 87 35 chrX 141200678 141201047 -21398883 + MLT1B LTR MaLR 1 388 -2 2871 232 39 21 chrX 141201047 141201218 -21398712 - L1MB3 LINE L1 -2295 4349 4183 * 3791 243 34 29 chrX 141201207 141201645 -21398285 - L1MB3 LINE L1 -5330 1212 778 1576 127 4 0 chrX 141201645 141201874 -21398056 - MER30 DNA MER1_type 0 230 1 432 0 0 0 chrX 141201883 141201931 -21397999 + (TG)n Simple_repeat Simple_repeat 2 49 0 3791 243 34 29 chrX 141201931 141202673 -21397257 - L1MB3 LINE L1 -5771 771 16 201 296 102 31 chrX 141202697 141202795 -21397135 + MIR3 SINE MIR 50 154 -54 238 213 74 74 chrX 141202888 141202996 -21396934 + HsTC2 DNA Tc2 1786 1893 -5 389 333 35 0 chrX 141203218 141203359 -21396571 - MIR3 SINE MIR -9 199 54 1679 204 7 7 chrX 141203930 141204239 -21395691 + AluSx SINE Alu 1 309 -3 294 248 95 15 chrX 141204313 141204450 -21395480 + L1ME4a LINE L1 5970 6117 -4 208 298 88 0 chrX 141204732 141204789 -21395141 + L2 LINE L2 3209 3270 -2 251 239 150 62 chrX 141205098 141205211 -21394719 + MIR SINE MIR 20 142 -66 669 274 234 24 chrX 141205864 141206236 -21393694 - MLT1J2 LTR MaLR 0 450 1 255 328 97 30 chrX 141206663 141206797 -21393133 + MIR3 SINE MIR 3 145 -63 265 245 186 10 chrX 141206990 141207092 -21392838 - L2 LINE L2 -453 2861 2742 * 456 189 11 0 chrX 141207087 141207177 -21392753 + MIR SINE MIR 141 231 -31 372 303 168 0 chrX 141208223 141208378 -21391552 - MIR SINE MIR -17 245 65 552 309 52 10 chrX 141208393 141208587 -21391343 + MIR SINE MIR 41 242 -20 212 302 0 0 chrX 141209000 141209063 -21390867 - MIR3 SINE MIR -30 178 116 380 189 15 235 chrX 141209132 141209392 -21390538 + MIR SINE MIR 47 249 -13 296 350 0 0 chrX 141209844 141209947 -21389983 - L2 LINE L2 -42 3271 3169 2054 303 76 44 chrX 141209967 141211333 -21388597 - L2 LINE L2 0 3272 1881 554 248 55 67 chrX 141214534 141214788 -21385142 + MIR SINE MIR 2 252 -10 201 74 0 0 chrX 141215452 141215479 -21384451 + (CAAAG)n Simple_repeat Simple_repeat 1 27 0 342 250 18 62 chrX 141216232 141216344 -21383586 - L2 LINE L2 -27 3286 3180 252 0 0 0 chrX 141217202 141217230 -21382700 + (TG)n Simple_repeat Simple_repeat 1 28 0 310 73 0 0 chrX 141217230 141217271 -21382659 - L1MA9 LINE L1 -161 6151 6111 2088 172 91 22 chrX 141218029 141218493 -21381437 + MLT1D LTR MaLR 1 496 -9 2702 16 7 3 chrX 141218656 141218966 -21380964 + AluY SINE Alu 1 311 0 301 324 133 23 chrX 141219483 141219656 -21380274 + MIR3 SINE MIR 2 193 -15 248 197 0 14 chrX 141219728 141219799 -21380131 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 215 253 0 11 chrX 141219858 141219949 -21379981 + (TA)n Simple_repeat Simple_repeat 1 90 0 271 376 17 0 chrX 141220767 141220884 -21379046 - MIR SINE MIR -142 120 2 255 169 155 14 chrX 141221004 141221075 -21378855 + L1MC4 LINE L1 7961 8041 -1 747 237 107 14 chrX 141221146 141221361 -21378569 - MIR SINE MIR -16 246 12 234 91 0 0 chrX 141221834 141221867 -21378063 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1055 182 59 123 chrX 141221888 141222278 -21377652 - MLT1A1 LTR MaLR 0 365 1 1797 134 87 36 chrX 141222438 141222795 -21377135 + THE1C LTR MaLR 1 375 0 6560 126 221 8 chrX 141222796 141224201 -21375729 + THE1C-int LTR MaLR 2 1651 0 1768 130 49 89 chrX 141224201 141224592 -21375338 + THE1C LTR MaLR 1 375 0 266 306 16 0 chrX 141224608 141224729 -21375201 - L1M4 LINE L1 -1300 4846 4724 417 282 86 46 chrX 141224775 141225423 -21374507 - L1M4 LINE L1 -2527 3619 2946 2919 203 74 59 chrX 141225450 141226434 -21373496 - L1MC4 LINE L1 -1 8041 7043 306 224 0 0 chrX 141226444 141226511 -21373419 + MER96 DNA MER1_type? 17 83 -92 253 305 74 0 chrX 141228372 141228467 -21371463 + L2 LINE L2 2553 2654 -660 1523 239 8 19 chrX 141228481 141228850 -21371080 + MLT1A1 LTR MaLR 1 365 0 692 289 17 39 chrX 141228856 141228949 -21370981 - MIR SINE MIR -12 250 157 1177 168 34 42 chrX 141228949 141229187 -21370743 - MER46A DNA MER2_type 0 236 1 692 289 17 39 chrX 141229187 141229325 -21370605 - MIR SINE MIR -105 157 24 261 309 138 0 chrX 141229664 141229787 -21370143 + MIR SINE MIR 117 256 -6 260 232 24 24 chrX 141229898 141229980 -21369950 + CT-rich Low_complexity Low_complexity 1 82 0 366 322 75 14 chrX 141230124 141230270 -21369660 + MIR SINE MIR 32 186 -76 675 293 52 31 chrX 141230400 141230629 -21369301 + MIR SINE MIR 12 245 -17 225 94 0 0 chrX 141230667 141230699 -21369231 + (TG)n Simple_repeat Simple_repeat 2 33 0 270 305 31 0 chrX 141231822 141231924 -21368006 + MIR SINE MIR 33 143 -65 713 269 59 50 chrX 141232179 141232398 -21367532 + MIR SINE MIR 29 249 -13 1741 187 0 7 chrX 141232405 141232715 -21367215 + AluJo SINE Alu 1 308 -4 968 113 0 0 chrX 141233208 141233341 -21366589 + FLAM_C SINE Alu 1 133 0 594 252 74 23 chrX 141233441 141233750 -21366180 + L1ME4a LINE L1 5574 5898 -223 562 341 100 0 chrX 141233952 141234172 -21365758 + MIR SINE MIR 21 262 0 743 225 19 12 chrX 141235257 141235442 -21364488 + MLT1J2 LTR MaLR 13 195 -251 293 237 65 21 chrX 141235463 141235556 -21364374 + MLT1J2 LTR MaLR 349 445 -5 454 233 21 85 chrX 141235658 141235847 -21364083 - L1ME4a LINE L1 -1 6120 5944 267 31 0 0 chrX 141236300 141236332 -21363598 + (CA)n Simple_repeat Simple_repeat 1 32 0 293 318 8 8 chrX 141236401 141236527 -21363403 + L1P LINE L1 4901 5026 -1120 4598 98 123 127 chrX 141236532 141237966 -21361964 + pTR5 LTR ERV1 379 2438 0 330 300 95 15 chrX 141238045 141238245 -21361685 + L1MC4a LINE L1 5118 5333 -813 1055 291 79 28 chrX 141238254 141238925 -21361005 + L1MC4a LINE L1 5354 6058 -1750 1474 104 13 9 chrX 141238989 141239220 -21360710 + L1MA5A LINE L1 6063 6294 -3 677 176 0 22 chrX 141239241 141239377 -21360553 + L1PB4 LINE L1 6023 6155 -1 181 333 33 0 chrX 141239785 141239845 -21360085 - MIR SINE MIR -70 138 77 21195 171 18 18 chrX 141239929 141246750 -21353180 + L1P5 LINE L1 16 6834 -741 4564 87 27 3 chrX 141246750 141247417 -21352513 + L1MA1 LINE L1 5620 6302 0 21195 171 18 18 chrX 141247417 141247434 -21352496 + L1P5 LINE L1 6834 6850 -725 281 221 240 29 chrX 141247606 141247710 -21352220 + MIR SINE MIR 125 250 -12 423 253 82 94 chrX 141247820 141247866 -21352064 + MIR SINE MIR 18 63 -199 2490 42 0 26 chrX 141247866 141248176 -21351754 - AluY SINE Alu -9 302 1 423 253 82 94 chrX 141248176 141248299 -21351631 + MIR SINE MIR 63 185 -77 230 274 0 0 chrX 141248448 141248521 -21351409 - MER70B LTR ERVL -19 559 487 315 351 126 47 chrX 141249197 141249388 -21350542 - L2 LINE L2 -16 3256 3051 200 289 0 0 chrX 141249394 141249439 -21350491 - MIR3 SINE MIR -1 207 163 580 266 49 22 chrX 141249504 141249688 -21350242 - MIR SINE MIR -54 208 20 36 0 0 0 chrX 141249898 141249934 -21349996 + AT_rich Low_complexity Low_complexity 1 36 0 2608 214 121 9 chrX 141249936 141250794 -21349136 - L1ME2 LINE L1 -26 6138 5188 852 162 0 0 chrX 141250809 141250951 -21348979 - L1PA16 LINE L1 -9 6157 6016 13411 179 11 3 chrX 141250965 141251331 -21348599 - L1PB1 LINE L1 -7 6860 6498 1670 150 8 0 chrX 141251331 141251578 -21348352 - AluSx SINE Alu -21 291 43 13411 179 11 3 chrX 141251578 141254947 -21344983 - L1PB1 LINE L1 -369 6498 3099 2851 128 0 0 chrX 141254945 141255367 -21344563 - L1PB1 LINE L1 -5390 1473 1052 * 1298 113 8 11 chrX 141255364 141255831 -21344099 - L1PBa LINE L1 -3777 3085 2559 * 456 253 199 0 chrX 141256279 141256425 -21343505 - L2 LINE L2 0 3313 3139 2070 112 10 23 chrX 141256469 141256773 -21343157 + AluSg SINE Alu 1 300 -10 5337 252 102 22 chrX 141256817 141257819 -21342111 - L1M4 LINE L1 -904 5242 4321 7067 100 4 9 chrX 141257819 141258793 -21341137 - LTR5 LTR ERVK 0 969 1 5337 252 102 22 chrX 141258793 141260191 -21339739 - L1M4 LINE L1 -1825 4321 2651 570 191 82 57 chrX 141260219 141260537 -21339393 - L1ME LINE L1 -4957 1123 785 447 343 78 44 chrX 141260538 141261294 -21338636 - L1M4 LINE L1 -3131 3513 2732 344 299 74 74 chrX 141262165 141262216 -21337714 - HAL1 LINE L1 -1154 1353 1303 2129 118 13 0 chrX 141262216 141262521 -21337409 - AluSq SINE Alu -4 309 1 344 299 74 74 chrX 141262521 141262700 -21337230 - HAL1 LINE L1 -1203 1304 1123 24 53 0 0 chrX 141262823 141262861 -21337069 + AT_rich Low_complexity Low_complexity 1 38 0 1037 240 156 0 chrX 141263517 141263800 -21336130 + MER58B DNA MER1_type 1 327 -14 21 0 0 0 chrX 141263826 141263847 -21336083 + AT_rich Low_complexity Low_complexity 1 21 0 1352 274 71 8 chrX 141263964 141264344 -21335586 - MLT1F1 LTR MaLR -1 566 163 22100 164 15 9 chrX 141264351 141271952 -21327978 - L1MA2 LINE L1 -60 7663 22 748 234 18 12 chrX 141271960 141272127 -21327803 - MLT1F1 LTR MaLR -399 168 1 218 279 0 0 chrX 141272417 141272485 -21327445 + A-rich Low_complexity Low_complexity 1 68 0 330 26 0 0 chrX 141272602 141272641 -21327289 + (CA)n Simple_repeat Simple_repeat 1 39 0 878 196 10 20 chrX 141272828 141273032 -21326898 - L1M4 LINE L1 -5520 1022 821 13925 136 21 10 chrX 141273035 141274801 -21325129 + Tigger7 DNA MER2_type 220 2019 -468 2034 160 33 30 chrX 141274801 141275164 -21324766 - THE1B LTR MaLR 0 364 1 13925 136 21 10 chrX 141275164 141275631 -21324299 + Tigger7 DNA MER2_type 2019 2479 -8 822 251 23 14 chrX 141275645 141275864 -21324066 - L1M4 LINE L1 -6306 236 16 427 338 24 24 chrX 141275876 141276169 -21323761 + L1M4 LINE L1 2875 3167 -2979 650 202 44 74 chrX 141276240 141276443 -21323487 + MER3 DNA MER1_type 1 197 -12 272 236 36 0 chrX 141276458 141276568 -21323362 + (TATAA)n Simple_repeat Simple_repeat 3 116 0 829 363 52 10 chrX 141276584 141277081 -21322849 - L2 LINE L2 -282 3031 2504 411 274 107 51 chrX 141277089 141277443 -21322487 + L1M4 LINE L1 3182 3555 -2591 529 272 83 35 chrX 141277518 141277856 -21322074 + L1M4 LINE L1 3666 4019 -2127 2114 94 0 4 chrX 141278596 141278871 -21321059 + AluSp SINE Alu 40 313 0 805 314 118 27 chrX 141279157 141279750 -21320180 + L2 LINE L2 1565 2211 -1103 1289 277 55 30 chrX 141279846 141280279 -21319651 - L2 LINE L2 -47 3266 2823 347 332 60 13 chrX 141280320 141280552 -21319378 + L2 LINE L2 2268 2510 -804 792 261 86 71 chrX 141280569 141280963 -21318967 - LTR33A LTR ERVL 0 523 124 1421 182 164 76 chrX 141281063 141281612 -21318318 - MLT1E1 LTR MaLR 0 654 10 700 343 94 6 chrX 141281722 141282040 -21317890 + L2 LINE L2 2927 3272 0 274 381 28 22 chrX 141282080 141282261 -21317669 - L2 LINE L2 -454 2860 2679 399 259 48 48 chrX 141282265 141282454 -21317476 + MER5A DNA MER1_type 1 189 0 655 266 54 11 chrX 141282473 141282657 -21317273 + MIR SINE MIR 71 262 0 278 269 148 27 chrX 141282842 141282991 -21316939 - L2 LINE L2 -890 2424 2258 5261 143 50 17 chrX 141283457 141284456 -21315474 - L1MA9 LINE L1 0 6312 5281 411 207 0 69 chrX 141284548 141284635 -21315295 - FRAM SINE Alu -20 146 73 3905 140 32 34 chrX 141285322 141286049 -21313881 - LTR8A LTR ERV1 -2 725 1 4637 208 44 43 chrX 141286485 141288029 -21311901 - L1MD2 LINE L1 -4 7166 5565 348 98 0 0 chrX 141288029 141288080 -21311850 - Alu SINE Alu -4 298 248 4637 208 44 43 chrX 141288080 141288814 -21311116 - L1MD2 LINE L1 -1605 5565 4834 * 16398 84 5 104 chrX 141288806 141289106 -21310824 - L1P LINE L1 -838 5308 4980 2908 18 6 3 chrX 141289106 141289448 -21310482 - L1PA4 LINE L1 -1 6154 5812 16398 84 5 104 chrX 141289448 141292185 -21307745 - L1P LINE L1 -1166 4980 2571 6615 44 2 5 chrX 141292185 141293026 -21306904 + L1PA7 LINE L1 5325 6164 0 4275 234 56 47 chrX 141293150 141294925 -21305005 - L1MD2 LINE L1 -2108 4849 3058 266 241 0 54 chrX 141294938 141295050 -21304880 + L1MD2 LINE L1 3794 3899 -3058 717 259 53 9 chrX 141295058 141295379 -21304551 - L1MD2 LINE L1 -3906 3051 2717 2749 214 23 73 chrX 141295715 141296552 -21303378 - L1MA9 LINE L1 -25 6287 5494 1797 57 0 4 chrX 141296552 141296782 -21303148 - L1PA8 LINE L1 0 6172 5944 2749 214 23 73 chrX 141296782 141296817 -21303113 - L1MA9 LINE L1 -818 5494 5459 257 315 45 35 chrX 141296833 141297033 -21302897 - L1MD2 LINE L1 -5856 999 798 242 267 77 61 chrX 141297216 141297398 -21302532 - L1MD2 LINE L1 -6335 520 30 470 274 255 24 chrX 141297480 141297545 -21302385 + L2 LINE L2 2744 2793 -520 6490 96 124 69 chrX 141297545 141298757 -21301173 - MER52C LTR ERV1 0 1278 1 470 274 255 24 chrX 141298757 141299141 -21300789 + L2 LINE L2 2793 3313 0 928 85 59 0 chrX 141299263 141299381 -21300549 + AluSg SINE Alu 1 125 -185 1976 123 39 3 chrX 141299606 141299890 -21300040 + AluSx SINE Alu 1 294 -18 270 0 0 0 chrX 141299890 141299920 -21300010 + (TA)n Simple_repeat Simple_repeat 2 31 0 645 251 44 61 chrX 141300331 141300442 -21299488 + L1M4 LINE L1 4876 4987 -1159 2054 124 31 0 chrX 141300442 141300732 -21299198 + AluSq SINE Alu 1 299 -14 645 251 44 61 chrX 141300732 141300915 -21299015 + L1M4 LINE L1 4987 5165 -981 335 256 178 0 chrX 141301000 141301090 -21298840 - MLT1J2 LTR MaLR -71 379 274 1114 187 20 8 chrX 141301144 141301450 -21298480 + MLT1A1 LTR MaLR 10 363 -2 307 264 11 22 chrX 141301491 141301582 -21298348 - MLT1I LTR MaLR -252 157 68 548 336 44 4 chrX 141302585 141302811 -21297119 + MIR SINE MIR 20 254 -8 397 318 99 59 chrX 141303211 141303541 -21296389 + L2 LINE L2 2930 3272 0 531 318 117 47 chrX 141303980 141304254 -21295676 + L3 LINE CR1 1279 1571 -6 332 154 0 0 chrX 141305512 141305577 -21294353 + L1MA9 LINE L1 6209 6273 -39 22 99 0 0 chrX 141305824 141305895 -21294035 + AT_rich Low_complexity Low_complexity 1 71 0 720 274 32 5 chrX 141307452 141307642 -21292288 + MIR SINE MIR 6 200 -62 432 241 80 18 chrX 141307863 141307975 -21291955 + MIR3 SINE MIR 89 207 -1 1251 231 8 4 chrX 141308810 141309065 -21290865 + MIR SINE MIR 2 257 -5 388 260 49 59 chrX 141309275 141309479 -21290451 - MLT1J1 LTR MaLR 0 446 245 527 246 6 0 chrX 141310112 141310291 -21289639 + (TG)n Simple_repeat Simple_repeat 1 180 0 468 181 6 55 chrX 141310365 141310547 -21289383 + (TATG)n Simple_repeat Simple_repeat 2 174 0 500 292 6 22 chrX 141310570 141310748 -21289182 + (TATG)n Simple_repeat Simple_repeat 2 176 0 186 224 0 0 chrX 141310815 141310864 -21289066 + (TATG)n Simple_repeat Simple_repeat 2 50 0 288 230 90 28 chrX 141310866 141311044 -21288886 + MER112 DNA MER1_type 66 254 -6 726 280 61 58 chrX 141311053 141311314 -21288616 - MIR SINE MIR 0 262 1 284 94 19 0 chrX 141311831 141311884 -21288046 + (TTG)n Simple_repeat Simple_repeat 3 56 0 352 264 33 0 chrX 141312041 141312132 -21287798 - L2 LINE L2 -18 3254 3161 3082 84 70 0 chrX 141312132 141312507 -21287423 + MLT2A1 LTR ERVL 1 409 -35 198 103 0 0 chrX 141312507 141312536 -21287394 + (TA)n Simple_repeat Simple_repeat 1 29 0 3082 84 70 0 chrX 141312536 141312575 -21287355 + MLT2A1 LTR ERVL 409 444 0 42903 60 14 4 chrX 141312575 141313704 -21286226 + HERVL-A1 LTR ERVL 1 1117 -4537 3128 43 0 0 chrX 141313704 141314080 -21285850 + L1PA5 LINE L1 5779 6154 0 42903 60 14 4 chrX 141314080 141318549 -21281381 + HERVL-A1 LTR ERVL 1117 5654 0 822 118 42 0 chrX 141318550 141318669 -21281261 + AluSg/x SINE Alu 180 303 -7 495 292 42 87 chrX 141318674 141318962 -21280968 - L2 LINE L2 -568 2746 2472 213 132 0 0 chrX 141319129 141319167 -21280763 + (ATG)n Simple_repeat Simple_repeat 1 38 0 407 257 134 31 chrX 141320321 141320517 -21279413 + MIR SINE MIR 4 214 -48 304 195 91 13 chrX 141320577 141320654 -21279276 - L2 LINE L2 0 3313 3231 * 437 204 92 28 chrX 141320623 141320765 -21279165 - MIR SINE MIR -15 247 97 235 327 52 52 chrX 141320958 141321169 -21278761 + L3 LINE CR1 953 1163 -414 572 247 82 121 chrX 141321194 141321574 -21278356 + LTR16A LTR ERVL 65 429 -21 532 306 19 0 chrX 141321596 141321753 -21278177 + HERV16 LTR ERVL 3 162 -4834 2470 310 36 15 chrX 141321838 141323579 -21276351 + HERV16 LTR ERVL 613 2482 -2514 5355 87 9 1 chrX 141323639 141324397 -21275533 - L1MA2 LINE L1 0 7723 6960 18410 172 45 3 chrX 141324397 141329015 -21270915 - L1MA2 LINE L1 -953 6612 1658 204 40 0 0 chrX 141329015 141329040 -21270890 + (TC)n Simple_repeat Simple_repeat 2 26 0 18410 172 45 3 chrX 141329040 141330752 -21269178 - L1MA2 LINE L1 -5907 1658 19 1682 329 42 21 chrX 141330754 141330892 -21269038 + HERV16 LTR ERVL 2466 2600 -2396 423 0 0 0 chrX 141330892 141330939 -21268991 + (TG)n Simple_repeat Simple_repeat 2 48 0 1682 329 42 21 chrX 141330939 141331875 -21268055 + HERV16 LTR ERVL 2600 3070 -1926 1725 331 54 29 chrX 141331957 141332414 -21267516 + HERV16 LTR ERVL 3666 4110 -1465 2777 86 6 0 chrX 141332414 141332775 -21267155 + THE1B LTR MaLR 1 363 -1 1725 331 54 29 chrX 141332775 141333382 -21266548 + HERV16 LTR ERVL 4110 4796 -779 1513 163 79 97 chrX 141333382 141333775 -21266155 + MLT1B LTR MaLR 1 386 -4 1725 331 54 29 chrX 141333775 141334028 -21265902 + HERV16 LTR ERVL 4796 5041 -534 392 322 125 40 chrX 141334485 141334789 -21265141 + LTR16A LTR ERVL 121 450 0 678 295 48 65 chrX 141334795 141335209 -21264721 + L3 LINE CR1 1163 1569 -8 549 235 71 37 chrX 141335401 141335638 -21264292 - MIR SINE MIR -8 254 8 529 272 22 33 chrX 141335956 141336136 -21263794 - MER5B DNA MER1_type 0 178 1 2234 177 2 35 chrX 141336266 141336695 -21263235 + L1MA4 LINE L1 5880 6294 -6 426 252 87 9 chrX 141336695 141336810 -21263120 + MER5A DNA MER1_type 66 189 0 216 221 184 142 chrX 141337054 141337321 -21262609 - L2 LINE L2 0 3272 2995 187 227 106 30 chrX 141337339 141337405 -21262525 + L2 LINE L2 3041 3111 -161 24 0 0 0 chrX 141339435 141339459 -21260471 + AT_rich Low_complexity Low_complexity 1 24 0 549 213 52 29 chrX 141339836 141339972 -21259958 - MER3 DNA MER1_type 0 209 71 * 931 186 29 6 chrX 141339956 141340128 -21259802 - MER3 DNA MER1_type -27 182 7 231 114 0 0 chrX 141340158 141340193 -21259737 + (TGG)n Simple_repeat Simple_repeat 1 35 0 401 304 48 32 chrX 141340679 141340929 -21259001 - L1ME LINE L1 -460 5661 5408 236 345 0 12 chrX 141341368 141341452 -21258478 + MIR3 SINE MIR 105 187 -21 337 257 35 18 chrX 141342343 141342456 -21257474 - MIR SINE MIR -64 144 30 271 320 21 10 chrX 141342490 141342587 -21257343 - L2 LINE L2 -1 3271 3174 239 211 19 0 chrX 141343193 141343245 -21256685 - L2 LINE L2 -2 3270 3218 260 174 110 55 chrX 141343667 141343776 -21256154 + L2 LINE L2 3194 3308 -5 567 208 107 37 chrX 141344944 141345160 -21254770 - L1MC5 LINE L1 -431 7530 7300 579 171 0 0 chrX 141345232 141345337 -21254593 - L1MB7 LINE L1 -7 6177 6073 3922 229 41 29 chrX 141345346 141346300 -21253630 - L1M4 LINE L1 -5573 969 5 790 225 140 74 chrX 141346347 141346886 -21253044 - L1MC5 LINE L1 -891 7070 6488 610 193 26 133 chrX 141346924 141347188 -21252742 - MER106A DNA MER1_type 0 236 1 520 278 54 53 chrX 141347595 141347885 -21252045 - HAL1b LINE L1 -835 582 303 216 0 0 0 chrX 141347885 141347909 -21252021 + (TA)n Simple_repeat Simple_repeat 1 24 0 520 278 54 53 chrX 141347909 141348106 -21251824 - HAL1b LINE L1 -1114 303 108 441 151 14 14 chrX 141348235 141348308 -21251622 - Tigger5 DNA MER2_type 0 2323 2251 372 182 0 0 chrX 141348277 141348332 -21251598 - Tigger5 DNA MER2_type -2268 55 1 * 40 21 0 0 chrX 141348869 141348916 -21251014 + AT_rich Low_complexity Low_complexity 1 47 0 559 296 100 34 chrX 141348947 141349416 -21250514 - L1ME LINE L1 -298 5823 5324 14610 32 3 0 chrX 141349859 141351598 -21248332 - L1P LINE L1 -1713 4433 2690 44217 48 3 1 chrX 141351601 141357727 -21242203 + L1PA4 LINE L1 1 6137 -18 212 0 36 0 chrX 141357734 141357762 -21242168 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1722 145 31 43 chrX 141357762 141358079 -21241851 - L1MB8 LINE L1 -10 6168 5854 546 184 10 5 chrX 141358086 141358195 -21241735 - L1MB8 LINE L1 -643 5528 5433 306 153 0 17 chrX 141358203 141358262 -21241668 - L1MB8 LINE L1 -1438 4708 4651 1684 240 2 25 chrX 141358267 141358700 -21241230 + L1M4c LINE L1 1411 1833 -4551 * 6816 177 58 21 chrX 141358699 141359953 -21239977 + L1PA12 LINE L1 -5 1294 -6268 3896 167 16 11 chrX 141359955 141360692 -21239238 + L1PA12 LINE L1 2311 3046 -4509 830 300 21 1 chrX 141360723 141360964 -21238966 + L2 LINE L2 2723 2970 -302 8136 30 0 1 chrX 141361178 141362653 -21237277 + L1PA3 LINE L1 4682 6155 0 219 211 0 0 chrX 141362791 141362829 -21237101 + (CGG)n Simple_repeat Simple_repeat 2 39 0 1668 201 0 3 chrX 141366363 141366672 -21233258 - AluJb SINE Alu -4 308 1 238 88 0 0 chrX 141366976 141367010 -21232920 - L1PA16 LINE L1 -175 5991 5958 1409 82 6 0 chrX 141368078 141368249 -21231681 + AluSq SINE Alu 3 174 -139 22 35 0 0 chrX 141369144 141369173 -21230757 + AT_rich Low_complexity Low_complexity 1 29 0 2229 89 36 0 chrX 141369217 141369519 -21230411 - AluSq SINE Alu 0 313 1 2253 101 0 55 chrX 141370247 141370573 -21229357 - AluSg SINE Alu -2 308 1 307 180 112 45 chrX 141371177 141371266 -21228664 - L1ME1 LINE L1 -203 5963 5869 1505 138 196 0 chrX 141371268 141371543 -21228387 - LOR1b LTR ERV1 0 461 133 4227 124 33 18 chrX 141371543 141372276 -21227654 - LOR1-int LTR ERV1 -5851 2269 1526 481 167 39 20 chrX 141372377 141372479 -21227451 + L1ME1 LINE L1 5757 5860 -306 1807 164 206 5 chrX 141372490 141372873 -21227057 + LOR1b LTR ERV1 2 461 0 421 167 28 0 chrX 141372873 141372945 -21226985 + LOR1b-int LTR ERV1 2 75 -8045 808 79 26 0 chrX 141372945 141373059 -21226871 - THE1C LTR MaLR 0 375 259 3346 133 78 2 chrX 141373059 141373572 -21226358 + THE1-int LTR MaLR 330 881 -699 1430 187 66 7 chrX 141373786 141374091 -21225839 + MER33 DNA MER1_type 2 324 0 320 214 245 13 chrX 141374186 141374345 -21225585 + L2 LINE L2 3118 3313 0 343 228 291 37 chrX 141374489 141374678 -21225252 + MIR SINE MIR 5 241 -21 321 174 71 71 chrX 141375239 141375337 -21224593 + MLT1L LTR MaLR 514 611 -4 231 237 7 15 chrX 141376672 141376752 -21223178 + T-rich Low_complexity Low_complexity 1 134 0 1777 170 27 7 chrX 141377422 141377722 -21222208 - AluSx SINE Alu -4 308 3 428 227 115 75 chrX 141377838 141378116 -21221814 - L1ME4a LINE L1 -76 6045 5757 833 80 0 40 chrX 141378147 141378272 -21221658 + L1P4 LINE L1 5420 5539 -622 222 259 0 0 chrX 141378851 141378905 -21221025 + (TG)n Simple_repeat Simple_repeat 1 54 0 2502 138 20 72 chrX 141379184 141379640 -21220290 - MSTB1 LTR MaLR 0 432 1 1097 122 13 0 chrX 141381373 141381529 -21218401 + AluSg/x SINE Alu 132 289 -21 22 0 0 0 chrX 141381529 141381551 -21218379 + AT_rich Low_complexity Low_complexity 1 22 0 640 215 21 14 chrX 141381723 141381867 -21218063 - MLT1I LTR MaLR 0 409 265 922 284 30 10 chrX 141381951 141382330 -21217600 - LTR16A LTR ERVL -7 443 1 999 319 58 21 chrX 141382487 141383017 -21216913 - ERVL LTR ERVL -450 5314 4765 336 342 94 10 chrX 141383190 141383392 -21216538 + L3 LINE CR1 278 496 -1081 188 352 152 19 chrX 141383420 141383574 -21216356 + L3 LINE CR1 1048 1239 -338 495 204 31 128 chrX 141383574 141383770 -21216160 + MER5B DNA MER1_type 1 177 -1 188 352 152 19 chrX 141383770 141383825 -21216105 + L3 LINE CR1 1239 1285 -292 615 305 155 34 chrX 141384126 141384795 -21215135 + L2 LINE L2 2278 3039 -233 640 13 0 13 chrX 141584806 141584883 -21015047 - L1P2 LINE L1 -474 5681 5606 767 32 11 0 chrX 141584884 141584978 -21014952 + L1PA4 LINE L1 6059 6153 -2 1025 239 107 84 chrX 141584984 141585336 -21014594 + L1M4 LINE L1 4353 4695 -1451 2292 110 7 0 chrX 141585336 141585644 -21014286 + AluSq SINE Alu 1 310 -3 1025 239 107 84 chrX 141585644 141586053 -21013877 + L1M4 LINE L1 4695 5139 -1007 2176 89 14 0 chrX 141586053 141586344 -21013586 + AluSp SINE Alu 2 296 -17 1025 239 107 84 chrX 141586344 141586452 -21013478 + L1M4 LINE L1 5139 5243 -903 215 203 14 58 chrX 141586452 141586521 -21013409 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 311 266 39 3 chrX 141586527 141586677 -21013253 + L1M4 LINE L1 5237 5388 -758 432 230 80 89 chrX 141586738 141587099 -21012831 + L1ME LINE L1 5039 5396 -750 417 268 62 43 chrX 141587079 141587124 -21012806 + L1ME LINE L1 5329 5372 -792 * 2030 123 3 7 chrX 141587124 141587433 -21012497 + AluJb SINE Alu 5 312 0 417 268 62 43 chrX 141587433 141587596 -21012334 + L1ME LINE L1 5372 5541 -623 980 244 5 0 chrX 141588700 141588913 -21011017 + LTR2 LTR ERV1 236 449 0 2830 112 42 2 chrX 141588913 141589323 -21010607 + Harlequin LTR ERV1 1 426 -6470 626 269 56 51 chrX 141589358 141589749 -21010181 + L1M4 LINE L1 4521 4913 -1233 325 324 18 6 chrX 141589835 141590005 -21009925 + L1M4 LINE L1 5040 5211 -935 277 107 36 24 chrX 141590042 141590126 -21009804 + (TA)n Simple_repeat Simple_repeat 1 85 0 339 237 75 111 chrX 141590333 141590704 -21009226 + L1ME LINE L1 5039 5396 -750 1357 123 44 5 chrX 141590726 141590930 -21009000 + AluJb SINE Alu 1 212 -100 350 275 51 22 chrX 141590931 141591121 -21008809 + L1M4 LINE L1 5351 5541 -637 355 366 13 13 chrX 141591960 141592192 -21007738 - LTR41 LTR ERVL -150 623 392 304 169 135 61 chrX 141592337 141592485 -21007445 - LTR41 LTR ERVL -595 178 20 1473 241 75 39 chrX 141592490 141592727 -21007203 - L1M4 LINE L1 -2459 3687 3460 2192 68 7 44 chrX 141592727 141593052 -21006878 - AluSp SINE Alu 0 314 1 1473 241 75 39 chrX 141593052 141593374 -21006556 - L1M4 LINE L1 -2686 3460 3107 276 233 83 33 chrX 141593553 141593673 -21006257 + L1ME LINE L1 5413 5538 -628 475 351 4 9 chrX 141594549 141594774 -21005156 - LTR41 LTR ERVL -158 615 392 1059 143 54 58 chrX 141595023 141595072 -21004858 + AluJb SINE Alu 88 136 -176 213 39 0 0 chrX 141595072 141595098 -21004832 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 1059 143 54 58 chrX 141595098 141595272 -21004658 + AluJb SINE Alu 136 310 -2 1943 117 7 27 chrX 141595351 141595649 -21004281 + AluSx SINE Alu 1 292 -20 1533 171 98 4 chrX 141595727 141596001 -21003929 + AluJb SINE Alu 3 302 0 1000 124 17 0 chrX 141596009 141596186 -21003744 + GA-rich Low_complexity Low_complexity 1 180 0 2055 129 7 0 chrX 141596262 141596557 -21003373 - AluSx SINE Alu -15 297 1 874 145 5 109 chrX 141596748 141596941 -21002989 + AluSg/x SINE Alu 118 290 -22 31 0 0 0 chrX 141596941 141596972 -21002958 + AT_rich Low_complexity Low_complexity 1 31 0 320 200 221 21 chrX 141597200 141597295 -21002635 - MLT1E3 LTR MaLR -510 114 1 3017 237 38 7 chrX 141597302 141598015 -21001915 + ERVL LTR ERVL 3724 4458 -1306 1274 188 0 59 chrX 141598486 141598774 -21001156 - L1PA16 LINE L1 -3 6163 5893 880 138 7 0 chrX 141598820 141598958 -21000972 + AluSq/x SINE Alu 3 141 -171 1463 148 38 13 chrX 141598958 141599195 -21000735 + AluSx SINE Alu 1 243 -69 1590 298 58 19 chrX 141599195 141599835 -21000095 + ERVL LTR ERVL 2465 3129 -2635 422 248 9 9 chrX 141599841 141599946 -20999984 + ERVL LTR ERVL 3615 3719 -2045 1043 300 48 11 chrX 141599949 141600302 -20999628 - MLT1E2 LTR MaLR -2 624 259 2678 252 26 42 chrX 141600303 141601117 -20998813 + ERVL LTR ERVL 4163 4963 -801 3029 33 3 0 chrX 141601117 141601473 -20998457 - L1PA4 LINE L1 -1487 4659 4300 8074 27 0 1 chrX 141601473 141602974 -20996956 + L1PA4 LINE L1 4654 6150 -5 1675 166 13 30 chrX 141603042 141603344 -20996586 + AluJb SINE Alu 1 297 -15 276 216 23 45 chrX 141603370 141603458 -20996472 + MLT2F LTR ERVL 535 620 -43 233 203 16 31 chrX 141603475 141603539 -20996391 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 423 0 0 0 chrX 141603587 141603634 -20996296 + (CA)n Simple_repeat Simple_repeat 2 48 0 1270 247 58 0 chrX 141603694 141604006 -20995924 + ERVL LTR ERVL 5067 5396 -368 5371 113 23 17 chrX 141604481 141605292 -20994638 + L1MA3 LINE L1 5485 6300 -5 190 321 129 36 chrX 141606946 141607395 -20992535 - L2 LINE L2 -19 3294 2804 2044 120 3 0 chrX 141607694 141607986 -20991944 + AluSq SINE Alu 1 293 -20 271 221 282 0 chrX 141608054 141608185 -20991745 - L2 LINE L2 -1305 2009 1842 218 194 30 15 chrX 141608771 141608838 -20991092 + (TA)n Simple_repeat Simple_repeat 1 68 0 1308 259 93 64 chrX 141608928 141609121 -20990809 + L1ME LINE L1 3673 3859 -2287 246 32 0 0 chrX 141609121 141609152 -20990778 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1308 259 93 64 chrX 141609152 141609799 -20990131 + L1ME LINE L1 3859 4537 -1609 1054 124 0 0 chrX 141609804 141609957 -20989973 - AluSg/x SINE Alu -17 295 143 2780 79 60 0 chrX 141609957 141610324 -20989606 + L1PA7 LINE L1 5763 6151 -3 329 252 44 7 chrX 141610550 141610685 -20989245 + L1ME LINE L1 5259 5398 -764 343 180 0 0 chrX 141610721 141610782 -20989148 + Alu SINE Alu 238 298 -4 525 234 29 48 chrX 141610787 141610957 -20988973 + L1ME LINE L1 5373 5541 -621 475 351 4 9 chrX 141611826 141612051 -20987879 - LTR41 LTR ERVL -158 615 392 1055 143 54 58 chrX 141612300 141612349 -20987581 + AluJb SINE Alu 88 136 -176 321 26 0 0 chrX 141612349 141612387 -20987543 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 1055 143 54 58 chrX 141612387 141612561 -20987369 + AluJb SINE Alu 136 310 -2 1919 117 7 27 chrX 141612643 141612941 -20986989 + AluSx SINE Alu 1 292 -20 1425 171 108 4 chrX 141613018 141613456 -20986474 + AluJb SINE Alu 3 467 0 806 176 28 7 chrX 141613547 141613689 -20986241 - AluSg/x SINE Alu -15 295 151 591 182 8 33 chrX 141613790 141613911 -20986019 + ERVL LTR ERVL 4492 4609 -1155 2883 234 49 12 chrX 141613984 141614744 -20985186 + ERVL LTR ERVL 4595 5382 -382 252 320 121 40 chrX 141620718 141621524 -20978406 - L2 LINE L2 -19 3294 2432 424 293 23 46 chrX 141621564 141621738 -20978192 - MER63A DNA MER1_type -25 185 16 1027 290 126 37 chrX 141621754 141622348 -20977582 - L2 LINE L2 -889 2425 1779 8149 194 56 48 chrX 141623250 141623326 -20976604 - L1MDa LINE L1 -2163 4377 4303 2231 125 3 3 chrX 141623326 141623638 -20976292 - AluSx SINE Alu 0 312 1 8149 194 56 48 chrX 141623638 141625999 -20973931 - L1MDa LINE L1 -2237 4303 1962 258 119 17 17 chrX 141625999 141626058 -20973872 + LTR66 LTR ERVL 383 441 -169 8149 194 56 48 chrX 141626058 141626831 -20973099 - L1MDa LINE L1 -4578 1962 1075 2038 130 3 17 chrX 141626831 141627131 -20972799 + AluSx SINE Alu 1 296 -16 8149 194 56 48 chrX 141627131 141627514 -20972416 - L1MDa LINE L1 -5465 1075 696 255 254 79 73 chrX 141628081 141628246 -20971684 + L2 LINE L2 2350 2515 -799 1256 198 8 8 chrX 141628460 141628712 -20971218 + MIR SINE MIR 11 262 0 364 267 76 30 chrX 141629444 141629575 -20970355 - MIR SINE MIR -79 183 47 27 49 0 0 chrX 141630600 141630641 -20969289 + AT_rich Low_complexity Low_complexity 1 41 0 1843 135 32 18 chrX 141630913 141631231 -20968699 - AluJb SINE Alu 0 322 1 194 281 12 49 chrX 141633252 141633334 -20966596 - MIR3 SINE MIR -43 165 87 195 167 0 0 chrX 141634074 141634116 -20965814 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 877 318 17 25 chrX 141635558 141635964 -20963966 - LTR16B LTR ERVL -24 440 38 474 270 48 32 chrX 141636656 141636858 -20963072 - MIR SINE MIR -53 209 5 381 297 148 14 chrX 141637800 141638009 -20961921 - MIR SINE MIR -12 250 14 357 24 0 0 chrX 141638171 141638213 -20961717 + (TG)n Simple_repeat Simple_repeat 2 43 0 243 206 0 32 chrX 141638366 141638429 -20961501 + MIR SINE MIR 104 164 -98 2258 110 0 3 chrX 141638431 141638731 -20961199 + AluSx SINE Alu 2 300 -12 21 36 0 0 chrX 141640015 141640043 -20959887 + AT_rich Low_complexity Low_complexity 1 28 0 1028 299 143 26 chrX 141640204 141640785 -20959145 + L2 LINE L2 1779 2427 -887 424 254 48 39 chrX 141640790 141640979 -20958951 + MER63 DNA MER1_type 7 1683 -5 404 319 93 40 chrX 141640981 141641605 -20958325 + L2 LINE L2 2417 3254 -18 2393 201 14 32 chrX 141642745 141643252 -20956678 - MLT1D LTR MaLR -7 498 1 394 270 37 60 chrX 141645030 141645245 -20954685 + L1M4 LINE L1 2 211 -6331 1770 166 0 17 chrX 141645274 141645564 -20954366 + AluJb SINE Alu 1 285 -27 534 16 0 0 chrX 141647349 141647411 -20952519 - L1PA4 LINE L1 -3 6152 6091 241 194 15 15 chrX 141647812 141647879 -20952051 + GA-rich Low_complexity Low_complexity 2 68 0 2971 224 31 13 chrX 141647888 141648604 -20951326 + L1M4 LINE L1 1356 2084 -4562 669 145 44 50 chrX 141648625 141648784 -20951146 + L1MB4 LINE L1 5982 6139 -41 746 191 8 8 chrX 141648786 141648912 -20951018 + AluJb SINE Alu 2 127 -185 1217 204 87 46 chrX 141649226 141649669 -20950261 - MLT1C LTR MaLR 0 467 4 385 158 0 24 chrX 141650105 141650187 -20949743 + L1MB3 LINE L1 6103 6182 -1 345 164 27 27 chrX 141650201 141650274 -20949656 + L1MB8 LINE L1 6100 6172 -6 2613 235 32 1 chrX 141650277 141650989 -20948941 + L1M4 LINE L1 2680 3413 -3231 844 226 11 0 chrX 141650983 141651173 -20948757 + L1MB5 LINE L1 2640 2831 -3315 * 1869 179 74 24 chrX 141651169 141651410 -20948520 + L1MB5 LINE L1 4950 5177 -997 2061 132 0 0 chrX 141651410 141651716 -20948214 + AluSx SINE Alu 1 306 0 1869 179 74 24 chrX 141651716 141652174 -20947756 + L1MB5 LINE L1 5177 5675 -499 1479 141 81 4 chrX 141652175 141652423 -20947507 + L1PA11 LINE L1 5907 6173 -1 3278 105 5 2 chrX 141652432 141652880 -20947050 + L1PA13 LINE L1 5709 6157 -6 2650 161 28 31 chrX 141652884 141653394 -20946536 + L1MB5 LINE L1 5652 6159 -15 541 276 0 0 chrX 141653408 141653535 -20946395 + MLT1H1 LTR MaLR 360 486 -69 1710 171 26 3 chrX 141653773 141654078 -20945852 + AluJo SINE Alu 1 312 0 314 80 20 0 chrX 141654089 141654139 -20945791 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 1056 228 137 86 chrX 141654245 141654675 -20945255 - MLT2F LTR ERVL -203 460 9 1832 242 89 45 chrX 141654678 141655315 -20944615 - ERVL-F LTR ERVL -12 5752 5088 758 260 48 36 chrX 141655383 141655633 -20944297 + ERVL LTR ERVL 1771 2023 -3741 1097 258 33 4 chrX 141655652 141655927 -20944003 + ERVL LTR ERVL 3328 3610 -2154 521 228 164 12 chrX 141655934 141656105 -20943825 + MLT1E3 LTR MaLR 8 204 -420 1085 100 0 47 chrX 141656113 141656283 -20943647 + L1P4 LINE L1 5395 5556 -605 566 44 0 0 chrX 141656296 141656364 -20943566 - L1PA12 LINE L1 -207 5961 5894 1680 249 47 23 chrX 141656474 141656944 -20942986 + MLT1E2 LTR MaLR 146 626 0 365 304 9 0 chrX 141656945 141657057 -20942873 + ERVL LTR ERVL 3607 3719 -2045 589 288 85 67 chrX 141657163 141657493 -20942437 + L1M4 LINE L1 16 351 -6191 903 171 0 0 chrX 141657514 141657654 -20942276 - AluJb SINE Alu -27 285 146 248 222 0 48 chrX 141657779 141657842 -20942088 - L1 LINE L1 -2010 4136 4077 496 252 54 54 chrX 141658070 141658292 -20941638 - HERVL LTR ERVL -3701 1953 1732 4534 105 2 0 chrX 141658373 141658980 -20940950 + L1PA13 LINE L1 5555 6162 -1 193 173 19 77 chrX 141658989 141659041 -20940889 - MIR3 SINE MIR -46 162 114 391 294 61 28 chrX 141659182 141659508 -20940422 + L1M4 LINE L1 2801 3137 -3507 324 316 44 0 chrX 141660121 141660235 -20939695 - LTR41 LTR ERVL -196 577 459 1809 133 50 20 chrX 141660451 141660753 -20939177 + AluJo SINE Alu 2 312 0 426 329 26 35 chrX 141660755 141660983 -20938947 - LTR41 LTR ERVL -206 567 342 238 189 19 0 chrX 141661168 141661221 -20938709 - LTR41 LTR ERVL -700 73 20 1406 251 70 18 chrX 141661226 141661769 -20938161 - L1 LINE L1 -2459 3687 3117 319 320 111 35 chrX 141662136 141662308 -20937622 - MIR SINE MIR -76 186 2 475 301 57 6 chrX 141663610 141663786 -20936144 - MIR SINE MIR -65 197 13 413 252 53 40 chrX 141664140 141664291 -20935639 + MIR SINE MIR 100 252 -10 226 204 66 7 chrX 141664357 141664509 -20935421 + (TA)n Simple_repeat Simple_repeat 1 161 0 33 0 0 0 chrX 141664509 141664542 -20935388 + AT_rich Low_complexity Low_complexity 1 33 0 11866 139 4 9 chrX 141664570 141666413 -20933517 - L1PA11 LINE L1 -2 6172 4337 2125 51 77 0 chrX 141666413 141666687 -20933243 - AluY SINE Alu -16 295 1 11866 139 4 9 chrX 141666687 141667473 -20932457 - L1PA11 LINE L1 -1837 4337 3549 2135 60 83 0 chrX 141668227 141668539 -20931391 - AluY SINE Alu 0 334 1 952 297 125 29 chrX 141668904 141669494 -20930436 + L2 LINE L2 1779 2425 -889 460 261 22 8 chrX 141669550 141669684 -20930246 + MER63A DNA MER1_type 50 185 -25 408 361 72 32 chrX 141669723 141670155 -20929775 + L2 LINE L2 2432 2880 -434 357 200 50 79 chrX 141670391 141670531 -20929399 + L2 LINE L2 3159 3294 -19 2883 234 49 12 chrX 141679929 141680689 -20919241 - ERVL LTR ERVL -382 5382 4595 3727 217 45 20 chrX 141680762 141681132 -20918798 - ERVL LTR ERVL -1155 4609 4250 2399 137 15 94 chrX 141681132 141681591 -20918339 - MER61B LTR ERV1 -2 423 1 3727 217 45 20 chrX 141681591 141682088 -20917842 - ERVL LTR ERVL -1514 4250 3720 1508 227 30 25 chrX 141682116 141682481 -20917449 + MLT1A2 LTR MaLR 8 374 0 1437 261 35 42 chrX 141682505 141683073 -20916857 + MLT1E2 LTR MaLR 59 624 -2 259 284 0 94 chrX 141683075 141683202 -20916728 - ERVL LTR ERVL -2044 3720 3606 * 1369 279 89 22 chrX 141683198 141683603 -20916327 - ERVL LTR ERVL -2634 3130 2685 2401 190 237 108 chrX 141683603 141684507 -20915423 - LTR28 LTR ERV1 0 1020 1 1369 279 89 22 chrX 141684507 141684596 -20915334 - ERVL LTR ERVL -3079 2685 2603 2721 37 0 0 chrX 141684611 141684936 -20914994 - L1P LINE L1 -1294 4852 4528 * 3834 21 0 0 chrX 141684934 141685366 -20914564 + L1PA3 LINE L1 5553 5984 -171 5152 27 0 0 chrX 141684936 141685541 -20914389 + L1PA3 LINE L1 5553 6159 0 203 273 0 0 chrX 141685574 141685618 -20914312 + (CATA)n Simple_repeat Simple_repeat 1 44 0 220 333 24 0 chrX 141686223 141686307 -20913623 - L2 LINE L2 -1 3271 3186 543 226 7 7 chrX 141686459 141686596 -20913334 + MER96B DNA MER1_type? 42 178 -239 23 0 0 29 chrX 141687023 141687044 -20912886 + AT_rich Low_complexity Low_complexity 1 22 -11 2548 72 0 0 chrX 141687044 141687351 -20912579 + AluY SINE Alu 1 307 -4 23 0 0 29 chrX 141687351 141687363 -20912567 + AT_rich Low_complexity Low_complexity 22 33 0 21 36 0 0 chrX 141687426 141687454 -20912476 + AT_rich Low_complexity Low_complexity 1 28 0 1771 158 31 0 chrX 141687977 141688268 -20911662 + AluJo SINE Alu 1 300 -12 4266 93 27 10 chrX 141688548 141689140 -20910790 - LTR43 LTR ERV1 0 602 1 2388 171 3 0 chrX 141689140 141689531 -20910399 - LTR43-int LTR ERV1 0 4798 4407 340 318 13 19 chrX 141689533 141689687 -20910243 - LTR43-int LTR ERV1 -1283 3515 3363 198 0 0 0 chrX 141689687 141689709 -20910221 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2005 132 3 3 chrX 141689713 141690000 -20909930 - AluSq SINE Alu -26 287 1 292 259 6 93 chrX 141690002 141690164 -20909766 - LTR43-int LTR ERV1 -1427 3371 3224 539 184 16 40 chrX 141690271 141690396 -20909534 - LTR43-int LTR ERV1 -1643 6113 5992 474 18 0 0 chrX 141690487 141690542 -20909388 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 1356 206 41 0 chrX 141690550 141690817 -20909113 - AluSx SINE Alu -34 278 1 1838 311 74 80 chrX 141690873 141691402 -20908528 - LTR43-int LTR ERV1 -1894 5862 5331 2210 101 0 19 chrX 141691402 141691718 -20908212 - AluSg SINE Alu 0 310 1 1838 311 74 80 chrX 141691718 141692026 -20907904 - LTR43-int LTR ERV1 -2425 5331 5023 1691 164 34 0 chrX 141692026 141692318 -20907612 + AluSx SINE Alu 5 306 -6 1838 311 74 80 chrX 141692318 141695733 -20904197 - LTR43-int LTR ERV1 -2733 5023 1634 1797 275 37 30 chrX 141695916 141696637 -20903293 - LTR43-int LTR ERV1 -3842 956 525 524 183 0 0 chrX 141696942 141697035 -20902895 + FLAM SINE Alu 41 133 -10 23 0 0 0 chrX 141697035 141697058 -20902872 + AT_rich Low_complexity Low_complexity 1 23 0 265 328 5 65 chrX 141697074 141697260 -20902670 - L2 LINE L2 -338 2975 2802 328 339 44 6 chrX 141698502 141698682 -20901248 + MIR SINE MIR 63 249 -13 545 300 35 18 chrX 141699243 141699470 -20900460 + MIR SINE MIR 21 251 -11 431 265 8 0 chrX 141699936 141700053 -20899877 + MIR SINE MIR 71 188 -74 436 287 175 8 chrX 141700069 141700320 -20899610 - L2 LINE L2 0 3313 3021 1203 283 55 44 chrX 141700438 141701003 -20898927 + ERVL LTR ERVL 889 1459 -4305 2382 240 18 30 chrX 141701007 141701612 -20898318 + ERVL LTR ERVL 1845 2442 -3322 639 110 0 0 chrX 141701614 141701705 -20898225 + AluS SINE Alu 2 92 -221 213 267 59 59 chrX 141707568 141707669 -20892261 - L2 LINE L2 -18 3254 3154 276 333 44 6 chrX 141707703 141707883 -20892047 - MIR SINE MIR -13 249 63 312 328 8 22 chrX 141709158 141709292 -20890638 + L2 LINE L2 2845 2976 -338 760 161 0 0 chrX 141709323 141709447 -20890483 - FLAM_C SINE Alu -17 126 3 200 246 70 0 chrX 141709464 141709521 -20890409 + L2 LINE L2 3021 3081 -232 31 0 0 0 chrX 141710074 141710105 -20889825 + AT_rich Low_complexity Low_complexity 1 31 0 318 208 0 83 chrX 141710117 141710213 -20889717 - L1MC4 LINE L1 -1341 6701 6614 384 150 0 0 chrX 141710219 141710299 -20889631 + (TA)n Simple_repeat Simple_repeat 2 81 0 347 198 0 62 chrX 141710307 141710403 -20889527 - L1MC4 LINE L1 -1339 6703 6614 207 173 0 0 chrX 141710409 141710461 -20889469 + (TA)n Simple_repeat Simple_repeat 2 53 0 305 261 0 22 chrX 141710469 141710561 -20889369 - L1MC4 LINE L1 -1339 6703 6614 249 207 0 0 chrX 141710567 141710625 -20889305 + (TA)n Simple_repeat Simple_repeat 2 59 0 250 80 0 20 chrX 141710626 141710676 -20889254 + LTR66 LTR ERVL 390 438 -172 1668 167 8 0 chrX 141710676 141710940 -20888990 - AluJb SINE Alu -42 270 5 25 31 0 0 chrX 141710946 141710978 -20888952 + AT_rich Low_complexity Low_complexity 1 32 0 1681 174 32 0 chrX 141711731 141712013 -20887917 - AluJb SINE Alu -21 291 1 3916 131 7 12 chrX 141712892 141713497 -20886433 + LTR43 LTR ERV1 1 602 0 2238 251 62 72 chrX 141713497 141714463 -20885467 + LTR43-int LTR ERV1 1 956 -3842 382 288 74 17 chrX 141714481 141714674 -20885256 + LTR43-int LTR ERV1 1602 1825 -5266 2552 314 72 69 chrX 141714887 141718337 -20881593 + LTR43-int LTR ERV1 1582 5049 -2707 1620 167 33 13 chrX 141718337 141718643 -20881287 - AluSx SINE Alu 0 312 1 2552 314 72 69 chrX 141718643 141719460 -20880470 + LTR43-int LTR ERV1 5049 5862 -1894 1365 191 45 4 chrX 141719516 141719783 -20880147 + AluSx SINE Alu 1 278 -34 228 86 0 0 chrX 141719788 141719823 -20880107 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 646 265 76 20 chrX 141719904 141720153 -20879777 + LTR43-int LTR ERV1 5989 6251 -1505 2262 107 3 0 chrX 141720314 141720614 -20879316 + AluSq SINE Alu 13 313 0 786 323 28 17 chrX 141720615 141720968 -20878962 + LTR43-int LTR ERV1 3368 3724 -1074 450 194 10 31 chrX 141721202 141721300 -20878630 + LTR43-int LTR ERV1 3736 3831 -967 5016 188 31 17 chrX 141721366 141722314 -20877616 + LTR43-int LTR ERV1 3838 4798 0 4104 99 36 10 chrX 141722314 141722901 -20877029 + LTR43 LTR ERV1 1 602 0 1776 176 7 0 chrX 141723179 141723485 -20876445 - AluJb SINE Alu -4 308 1 7964 74 5 1 chrX 141723563 141725404 -20874526 - L1PA6 LINE L1 0 6154 4314 1699 121 0 23 chrX 141725404 141725659 -20874271 + L1PA8A LINE L1 5876 6126 -5 39864 78 8 7 chrX 141725759 141731754 -20868176 - L1PA6 LINE L1 -145 6009 11 502 247 99 6 chrX 141732768 141732930 -20867000 - MER96B DNA MER1_type? -239 178 2 220 333 24 0 chrX 141733057 141733141 -20866789 + L2 LINE L2 3186 3271 -1 212 267 0 0 chrX 141733746 141733791 -20866139 + (TATG)n Simple_repeat Simple_repeat 4 48 0 5165 32 2 0 chrX 141733831 141734428 -20865502 - L1PA3 LINE L1 -5 6150 5553 2599 55 0 0 chrX 141734426 141734751 -20865179 + L1P LINE L1 4528 4852 -1294 1369 279 89 22 chrX 141734766 141734855 -20865075 + ERVL LTR ERVL 2603 2685 -3079 2336 192 230 106 chrX 141734855 141735762 -20864168 + LTR28 LTR ERV1 1 1020 0 1369 279 89 22 chrX 141735762 141736167 -20863763 + ERVL LTR ERVL 2685 3130 -2634 259 284 0 94 chrX 141736163 141736290 -20863640 + ERVL LTR ERVL 3606 3720 -2044 * 1437 261 35 42 chrX 141736292 141736860 -20863070 - MLT1E2 LTR MaLR -2 624 59 1576 226 22 25 chrX 141736884 141737252 -20862678 - MLT1A2 LTR MaLR 0 374 8 540 185 115 0 chrX 141737280 141737410 -20862520 + ERVL LTR ERVL 3720 3864 -1900 2532 180 73 60 chrX 141737517 141737549 -20862381 + MER45B DNA AcHobo 415 445 -1136 2641 62 0 0 chrX 141737549 141737858 -20862072 + AluY SINE Alu 1 309 -2 2532 180 73 60 chrX 141737858 141738286 -20861644 + MER45B DNA AcHobo 445 887 -694 1879 143 17 0 chrX 141738286 141738579 -20861351 + AluJb SINE Alu 1 298 -14 2532 180 73 60 chrX 141738579 141738735 -20861195 + MER45B DNA AcHobo 887 1040 0 957 115 7 0 chrX 141738807 141738946 -20860984 + L1MA4A LINE L1 6163 6302 -1 1941 147 27 0 chrX 141738946 141739245 -20860685 + AluJb SINE Alu 1 307 -5 431 214 12 0 chrX 141739397 141739481 -20860449 + MER112 DNA MER1_type 176 260 0 473 293 168 0 chrX 141739943 141740134 -20859796 + MIR SINE MIR 6 228 -34 1123 170 13 61 chrX 141740272 141740502 -20859428 + MER20 DNA MER1_type 1 219 0 308 202 32 129 chrX 141741088 141741212 -20858718 - MIR SINE MIR -52 210 99 1649 212 68 68 chrX 141741531 141741988 -20857942 + Charlie1a DNA MER1_type 1 457 -998 358 117 17 0 chrX 141741989 141742049 -20857881 + Charlie1a DNA MER1_type 909 969 -486 4208 223 56 24 chrX 141742051 141743215 -20856715 + L1ME1 LINE L1 3526 4726 -1420 495 283 22 17 chrX 141743209 141743389 -20856541 + L1M2b LINE L1 1199 1379 -5830 * 1793 212 21 0 chrX 141743391 141743731 -20856199 - L1M2 LINE L1 -6498 351 5 2830 195 14 78 chrX 141743731 141744500 -20855430 + L1ME1 LINE L1 5304 6023 -143 247 242 0 0 chrX 141744517 141744577 -20855353 + L1MA10 LINE L1 6007 6225 -100 226 178 0 0 chrX 141744580 141744625 -20855305 + Alu SINE Alu 40 84 -216 2241 93 7 3 chrX 141744625 141744916 -20855014 + AluSx SINE Alu 1 292 -20 2352 236 27 10 chrX 141744918 141745439 -20854491 + MLT1F1 LTR MaLR 21 550 -17 264 221 0 77 chrX 141745471 141745575 -20854355 + L1MA9 LINE L1 6217 6312 0 1513 169 14 7 chrX 141745579 141745858 -20854072 + Charlie1a DNA MER1_type 958 1238 -217 1903 125 0 4 chrX 141746083 141746347 -20853583 + AluSx SINE Alu 35 297 -15 1536 216 99 0 chrX 141746409 141746794 -20853136 + L1ME2 LINE L1 5732 6154 -10 683 299 140 19 chrX 141746942 141747600 -20852330 + L2 LINE L2 2530 3313 0 180 225 0 25 chrX 141747751 141747791 -20852139 + MER5A DNA MER1_type 129 167 -22 366 198 154 0 chrX 141747846 141747937 -20851993 - L2 LINE L2 -46 3267 3163 933 181 0 18 chrX 141748154 141748325 -20851605 - MER5B DNA MER1_type -3 175 8 258 303 90 51 chrX 141748421 141748599 -20851331 + MER5A DNA MER1_type 1 185 -4 224 57 0 29 chrX 141748935 141748970 -20850960 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2000 129 3 30 chrX 141748972 141749267 -20850663 - AluSx SINE Alu -25 287 1 1585 143 17 33 chrX 141749275 141749576 -20850354 - L1MC/D LINE L1 -555 6081 5786 1607 190 33 68 chrX 141749577 141750032 -20849898 + MSTD LTR MaLR 1 428 0 1179 252 5 5 chrX 141750032 141750464 -20849466 - L1MC/D LINE L1 -751 5789 5252 5771 229 37 17 chrX 141750573 141752179 -20847751 - L1MC/D LINE L1 -2129 4411 2774 4074 213 65 17 chrX 141752174 141753293 -20846637 - L1MC/D LINE L1 -4087 2453 1281 * 2520 144 5 0 chrX 141753298 141753680 -20846250 - L1PA15 LINE L1 0 6165 5782 1905 155 0 17 chrX 141753680 141753976 -20845954 - AluJo SINE Alu -21 291 1 2222 240 38 17 chrX 141753976 141754575 -20845355 - L1MC/D LINE L1 -5329 1211 600 520 150 0 0 chrX 141754604 141754684 -20845246 - L1MC/D LINE L1 -6136 404 325 1278 159 25 0 chrX 141754789 141754990 -20844940 - AluJo SINE Alu -106 206 1 400 214 0 87 chrX 141755006 141755109 -20844821 - L1MC/D LINE L1 -6446 94 1 772 217 80 0 chrX 141755149 141755324 -20844606 - MER5A DNA MER1_type 0 189 1 468 205 19 137 chrX 141755341 141755502 -20844428 - MER5B DNA MER1_type 0 178 37 2438 175 14 46 chrX 141755502 141755820 -20844110 + L1MB7 LINE L1 5689 6016 -168 2552 115 59 57 chrX 141755820 141756010 -20843920 + MSTC LTR MaLR 1 189 -239 477 0 0 0 chrX 141756010 141756063 -20843867 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1841 170 0 0 chrX 141756068 141756350 -20843580 - AluJo SINE Alu -30 282 1 2552 115 59 57 chrX 141756350 141756578 -20843352 + MSTC LTR MaLR 192 426 -2 2438 175 14 46 chrX 141756578 141756755 -20843175 + L1MB7 LINE L1 6016 6168 -16 210 324 14 14 chrX 141756900 141756974 -20842956 - MER5A DNA MER1_type -1 188 115 3982 117 5 30 chrX 141757089 141757688 -20842242 - L1PB3 LINE L1 0 6154 5571 282 246 76 34 chrX 141758136 141758254 -20841676 - L1ME4a LINE L1 -44 6077 5955 1357 204 101 16 chrX 141758382 141758700 -20841230 + MER2 DNA MER2_type 1 345 0 299 271 54 78 chrX 141758753 141759083 -20840847 + HAL1b LINE L1 1110 6093 -28 228 221 73 15 chrX 141759388 141759456 -20840474 - L2 LINE L2 -890 2424 2353 1401 267 55 82 chrX 141759474 141760080 -20839850 - MLT1G LTR MaLR -6 584 1 217 348 33 11 chrX 141760301 141760393 -20839537 + L2 LINE L2 2778 2871 -443 679 217 108 117 chrX 141760438 141760899 -20839031 - LTR16A1 LTR ERVL 0 457 1 1660 105 138 18 chrX 141760972 141761248 -20838682 - AluSg1 SINE Alu 0 309 1 557 325 88 28 chrX 141761252 141761535 -20838395 + L2 LINE L2 2968 3267 -5 935 144 144 0 chrX 141761735 141761931 -20837999 + L1PA14 LINE L1 5957 6175 0 342 287 74 0 chrX 141763213 141763335 -20836595 + MIR SINE MIR 118 248 -14 454 194 294 12 chrX 141763504 141763664 -20836266 + L2 LINE L2 3101 3305 -8 836 332 98 16 chrX 141763699 141764148 -20835782 + L2 LINE L2 2394 2879 -435 916 131 7 0 chrX 141764577 141764714 -20835216 + FLAM_C SINE Alu 1 138 -5 255 61 0 0 chrX 141764755 141764788 -20835142 + (TTA)n Simple_repeat Simple_repeat 3 35 0 654 154 114 8 chrX 141764788 141764911 -20835019 - MIR SINE MIR -126 136 1 198 0 0 0 chrX 141764979 141765001 -20834929 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 1819 183 0 3 chrX 141765464 141765764 -20834166 + AluJb SINE Alu 1 299 -13 294 222 323 10 chrX 141766431 141766530 -20833400 - L2 LINE L2 -5 3308 3179 190 0 32 32 chrX 141766769 141766800 -20833130 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 2065 135 0 0 chrX 141767439 141767728 -20832202 + AluSx SINE Alu 1 289 -23 1638 209 112 24 chrX 141767810 141768308 -20831622 + MLT1E LTR MaLR 13 593 0 249 187 56 28 chrX 141768689 141768740 -20831190 + (TA)n Simple_repeat Simple_repeat 2 50 -61 216 0 0 0 chrX 141768740 141768764 -20831166 + (GA)n Simple_repeat Simple_repeat 2 25 0 249 187 56 28 chrX 141768764 141768787 -20831143 + (TA)n Simple_repeat Simple_repeat 50 71 -40 2167 111 0 3 chrX 141768787 141769076 -20830854 - AluSx SINE Alu -24 288 1 249 187 56 28 chrX 141769076 141769107 -20830823 + (TA)n Simple_repeat Simple_repeat 71 111 0 203 200 0 0 chrX 141769387 141769427 -20830503 + L2 LINE L2 3264 3303 -10 740 175 8 0 chrX 141769429 141769555 -20830375 + FRAM SINE Alu 14 140 -36 189 0 0 0 chrX 141769572 141769593 -20830337 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 182 37 37 0 chrX 141770500 141770527 -20829403 + (TCCCG)n Simple_repeat Simple_repeat 4 31 0 21 0 0 0 chrX 141771072 141771093 -20828837 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 141771411 141771433 -20828497 + GC_rich Low_complexity Low_complexity 1 22 0 184 178 9 65 chrX 141771498 141771605 -20828325 + CT-rich Low_complexity Low_complexity 3 103 0 2124 89 3 55 chrX 141772767 141773092 -20826838 + AluSq SINE Alu 1 308 -5 252 325 16 8 chrX 141773246 141773372 -20826558 - L1ME4a LINE L1 -201 5920 5794 609 333 99 38 chrX 141775798 141776461 -20823469 + L2 LINE L2 2579 3294 -19 706 215 55 20 chrX 141776685 141776885 -20823045 - L1ME3 LINE L1 -1 6161 5955 233 271 0 0 chrX 141776957 141777016 -20822914 - L2 LINE L2 -3 3310 3252 474 173 95 50 chrX 141778201 141778433 -20821497 + MER3 DNA MER1_type 42 2584 0 423 292 6 47 chrX 141779450 141779621 -20820309 - MIR SINE MIR 0 262 99 212 245 0 20 chrX 141779815 141779864 -20820066 + MIR SINE MIR 215 262 0 238 330 18 55 chrX 141781216 141781325 -20818605 + L2 LINE L2 2556 2660 -654 678 316 6 0 chrX 141782193 141782364 -20817566 + MIR3 SINE MIR 8 179 -29 1897 158 3 19 chrX 141782453 141782770 -20817160 + AluJo SINE Alu 1 312 0 1485 90 68 18 chrX 141783056 141783278 -20816652 - L1PA11 LINE L1 -1 6173 5941 1626 168 64 17 chrX 141784335 141784632 -20815298 - AluJo SINE Alu -1 311 1 373 322 79 47 chrX 141785362 141785704 -20814226 + L3 LINE CR1 153 505 -1072 22 0 0 0 chrX 141785959 141785981 -20813949 + AT_rich Low_complexity Low_complexity 1 22 0 215 297 40 14 chrX 141786036 141786110 -20813820 + L3 LINE CR1 631 706 -871 181 156 0 111 chrX 141786867 141786912 -20813018 - MIR SINE MIR -123 85 46 597 305 41 30 chrX 141787120 141787317 -20812613 - MIR3 SINE MIR -5 203 5 21 71 0 0 chrX 141787342 141787384 -20812546 + AT_rich Low_complexity Low_complexity 1 42 0 3093 123 40 22 chrX 141787418 141787923 -20812007 - Tigger1 DNA MER2_type -1 2417 1904 11898 143 13 4 chrX 141788424 141791034 -20808896 + L1PA11 LINE L1 3549 6174 0 22 0 0 0 chrX 141791062 141791084 -20808846 + AT_rich Low_complexity Low_complexity 1 22 0 219 105 47 47 chrX 141791084 141791170 -20808760 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 83 80 0 0 chrX 141791170 141791358 -20808572 + AT_rich Low_complexity Low_complexity 1 188 0 477 245 46 33 chrX 141791405 141791556 -20808374 - MIR SINE MIR -10 252 100 455 307 57 6 chrX 141791910 141792086 -20807844 + MIR SINE MIR 13 197 -65 313 314 111 35 chrX 141793389 141793561 -20806369 + MIR SINE MIR 2 186 -76 1395 253 82 11 chrX 141793916 141794442 -20805488 + L1M4 LINE L1 3107 3669 -2477 432 333 11 17 chrX 141794723 141794897 -20805033 + LTR41 LTR ERVL 392 564 -209 1935 115 51 14 chrX 141794897 141795193 -20804737 - AluJo SINE Alu -4 308 2 342 307 44 0 chrX 141795406 141795520 -20804410 + LTR41 LTR ERVL 459 577 -196 369 0 0 0 chrX 141796060 141796101 -20803829 + (TG)n Simple_repeat Simple_repeat 2 42 0 226 174 22 0 chrX 141796472 141796518 -20803412 + LTR41 LTR ERVL 567 613 -160 569 186 27 109 chrX 141796769 141796952 -20802978 + LTR41 LTR ERVL 593 760 -13 755 214 150 69 chrX 141797199 141797766 -20802164 - L1ME LINE L1 -601 5561 4944 189 94 0 0 chrX 141798607 141798639 -20801291 + (T)n Simple_repeat Simple_repeat 1 32 0 264 258 45 22 chrX 141799081 141799170 -20800760 - L1MC3 LINE L1 0 7785 7695 481 232 94 20 chrX 141799423 141799630 -20800300 + MIR SINE MIR 1 224 -38 236 349 95 4 chrX 141799713 141799945 -20799985 - MIR SINE MIR -8 254 2 2054 115 0 3 chrX 141800156 141800492 -20799438 - AluSx SINE Alu 0 335 1 4940 89 35 18 chrX 141800492 141801168 -20798762 - L1PA11 LINE L1 -11 6163 5476 669 161 9 9 chrX 141801171 141801283 -20798647 - AluSp/q SINE Alu -39 274 163 1643 242 120 22 chrX 141801283 141802357 -20797573 - L1PA11 LINE L1 -715 5446 2316 4333 126 2 0 chrX 141802575 141803180 -20796750 - L1PA13 LINE L1 -3 6160 5555 882 207 6 0 chrX 141803188 141803357 -20796573 - LTR43-int LTR ERV1 -4002 796 627 1195 65 0 47 chrX 141803519 141803689 -20796241 - L1P4 LINE L1 -605 5556 5395 499 241 165 6 chrX 141803697 141803867 -20796063 - MLT1E3 LTR MaLR -420 204 8 797 263 28 5 chrX 141803874 141804087 -20795843 - ERVL LTR ERVL -2154 3610 3393 1536 264 18 27 chrX 141804524 141805115 -20794815 + MER84-int LTR ERV1 627 2203 -3847 291 347 58 50 chrX 141805341 141805837 -20794093 + MER84-int LTR ERV1 1650 2149 -5607 261 180 0 20 chrX 141805854 141805904 -20794026 + MER84-int LTR ERV1 2368 2416 -2382 509 322 82 32 chrX 141806208 141806609 -20793321 + MER84-int LTR ERV1 2564 2984 -4772 665 323 35 42 chrX 141806765 141807552 -20792378 + MER84-int LTR ERV1 2787 4636 -1593 1533 334 42 46 chrX 141807575 141808231 -20791699 + MER84-int LTR ERV1 4401 5058 -2698 1879 174 0 10 chrX 141808231 141808542 -20791388 - AluSx SINE Alu -4 308 1 1533 334 42 46 chrX 141808542 141809353 -20790577 + MER84-int LTR ERV1 5058 5862 -1894 681 130 87 0 chrX 141809416 141809531 -20790399 + AluSp SINE Alu 23 147 -166 1153 118 15 93 chrX 141809533 141809737 -20790193 - AluSx SINE Alu -124 188 1 1704 164 0 43 chrX 141809941 141810371 -20789559 - AluJo SINE Alu 0 416 1 326 243 0 0 chrX 141810670 141810740 -20789190 - MLT2F LTR ERVL -58 605 536 918 266 64 24 chrX 141810768 141811151 -20788779 - MLT2F LTR ERVL -210 453 11 206 132 19 38 chrX 141811459 141811512 -20788418 + (TA)n Simple_repeat Simple_repeat 2 53 0 1037 247 8 0 chrX 141811612 141811847 -20788083 - ERVL LTR ERVL -439 5325 5089 677 291 29 44 chrX 141811865 141811939 -20787991 + ERVL LTR ERVL 1775 1849 -3915 197 32 0 32 chrX 141811939 141811970 -20787960 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 677 291 29 44 chrX 141811970 141812170 -20787760 + ERVL LTR ERVL 1849 2045 -3719 * 1057 279 37 4 chrX 141812166 141812438 -20787492 + ERVL LTR ERVL 3326 3606 -2158 2016 235 50 29 chrX 141812449 141813045 -20786885 + MLT1E2 LTR MaLR 8 626 0 411 286 9 0 chrX 141813046 141813158 -20786772 + ERVL LTR ERVL 3607 3719 -2045 486 265 102 81 chrX 141813270 141813602 -20786328 + L1M4 LINE L1 16 354 -6188 958 149 0 7 chrX 141813622 141813776 -20786154 - AluJb SINE Alu -27 285 133 359 301 49 59 chrX 141813897 141814183 -20785747 - L1 LINE L1 -2010 4136 3854 998 175 1 0 chrX 141814222 141814447 -20785483 - AluJb SINE Alu -22 290 88 398 269 95 44 chrX 141814639 141814933 -20784997 + LTR41 LTR ERVL 307 615 -158 1455 298 52 11 chrX 141815146 141815666 -20784264 - ERVL LTR ERVL -2759 3005 2465 1679 135 0 8 chrX 141815666 141815911 -20784019 - AluSx SINE Alu -69 243 1 864 151 7 0 chrX 141815911 141816050 -20783880 - AluSq/x SINE Alu -171 141 2 1332 181 0 59 chrX 141816095 141816383 -20783547 + L1PA16 LINE L1 5893 6163 -3 2910 242 43 10 chrX 141816858 141817573 -20782357 - ERVL LTR ERVL -1306 4458 3720 368 179 221 21 chrX 141817577 141817672 -20782258 + MLT1E3 LTR MaLR 1 114 -510 23 0 0 0 chrX 141817901 141817924 -20782006 + AT_rich Low_complexity Low_complexity 1 23 0 1118 126 6 6 chrX 141817924 141818098 -20781832 - AluSg/x SINE Alu -18 292 119 2201 121 0 0 chrX 141818282 141818579 -20781351 + AluSx SINE Alu 1 297 -15 1456 159 92 11 chrX 141818656 141818939 -20780991 - AluJo SINE Alu 0 312 7 1982 102 11 14 chrX 141819002 141819310 -20780620 - AluSx SINE Alu 0 310 4 970 148 7 0 chrX 141819371 141819695 -20780235 - AluSc SINE Alu 0 449 125 249 114 0 0 chrX 141819728 141819763 -20780167 - AluSc SINE Alu -180 122 88 476 335 5 18 chrX 141820009 141820233 -20779697 + LTR41 LTR ERVL 392 612 -161 507 252 49 19 chrX 141821063 141821227 -20778703 - L1ME LINE L1 -621 5541 5374 343 180 0 0 chrX 141821239 141821300 -20778630 - Alu SINE Alu -4 298 238 351 244 44 7 chrX 141821332 141821467 -20778463 - L1ME LINE L1 -764 5398 5259 207 289 0 0 chrX 141821473 141821525 -20778405 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 508 133 61 3 chrX 141821684 141821982 -20777948 + (TA)n Simple_repeat Simple_repeat 1 315 0 434 160 58 0 chrX 141822090 141822338 -20777592 + (TA)n Simple_repeat Simple_repeat 1 262 0 4728 54 42 0 chrX 141822340 141822910 -20777020 - L1PA7 LINE L1 -16 6138 5545 2032 248 108 88 chrX 141823000 141823886 -20776044 - L1M4 LINE L1 -758 5388 4521 2179 113 0 0 chrX 141823886 141824179 -20775751 + AluSx SINE Alu 1 293 -19 2032 248 108 88 chrX 141824179 141824784 -20775146 - L1M4 LINE L1 -1625 4521 3858 186 43 0 0 chrX 141824784 141824807 -20775123 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2032 248 108 88 chrX 141824807 141824997 -20774933 - L1M4 LINE L1 -2288 3858 3673 208 203 63 0 chrX 141825087 141825166 -20774764 + (TA)n Simple_repeat Simple_repeat 1 84 0 244 275 231 0 chrX 141825752 141825934 -20773996 + L2 LINE L2 1842 2065 -1249 2044 120 3 0 chrX 141825953 141826245 -20773685 - AluSq SINE Alu -20 293 1 5367 119 24 12 chrX 141828640 141829447 -20770483 - L1MA3 LINE L1 -5 6300 5485 1246 253 58 0 chrX 141829922 141830234 -20769696 - ERVL LTR ERVL -368 5396 5067 405 0 0 0 chrX 141830294 141830339 -20769591 + (TG)n Simple_repeat Simple_repeat 2 46 0 233 203 16 31 chrX 141830387 141830451 -20769479 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 1740 155 13 26 chrX 141830583 141830887 -20769043 - AluSx SINE Alu -12 300 1 8002 30 0 5 chrX 141830957 141832460 -20767470 - L1PA4 LINE L1 -2 6153 4654 3022 31 0 0 chrX 141832460 141832816 -20767114 + L1PA4 LINE L1 4304 4659 -1487 1483 241 30 60 chrX 141832816 141833318 -20766612 - ERVL LTR ERVL -801 4963 4477 10213 91 31 37 chrX 141833540 141835340 -20764590 - Tigger1 DNA MER2_type -605 1813 3 845 249 30 53 chrX 141835352 141835617 -20764313 + MIR SINE MIR 4 262 0 345 47 0 0 chrX 141835907 141835950 -20763980 + (TCC)n Simple_repeat Simple_repeat 1 43 0 1798 121 0 79 chrX 141835957 141836272 -20763658 - AluJo SINE Alu -22 290 1 1264 190 52 0 chrX 141836447 141836757 -20763173 - MER33 DNA MER1_type -6 318 1 222 257 0 68 chrX 141836788 141836862 -20763068 + MIR SINE MIR 113 181 -81 2134 124 3 3 chrX 141837406 141837713 -20762217 + AluSx SINE Alu 1 307 -5 216 0 0 0 chrX 141837744 141837768 -20762162 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 625 339 46 34 chrX 141838103 141838516 -20761414 + L2 LINE L2 2434 2851 -463 226 341 0 12 chrX 141838767 141838852 -20761078 + L2 LINE L2 3189 3272 0 366 152 61 0 chrX 141839271 141839337 -20760593 - MER91C DNA MER1_type -17 123 54 227 327 133 0 chrX 141839385 141839510 -20760420 - MIR3 SINE MIR -82 126 2 23 33 0 0 chrX 141841503 141841533 -20758397 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chrX 141841665 141841695 -20758235 + AT_rich Low_complexity Low_complexity 1 30 0 216 200 0 0 chrX 141843208 141843258 -20756672 + (TA)n Simple_repeat Simple_repeat 1 50 0 213 39 0 0 chrX 141843410 141843436 -20756494 + (TTG)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chrX 141847161 141847183 -20752747 + AT_rich Low_complexity Low_complexity 1 22 0 1009 211 49 23 chrX 141848268 141848461 -20751469 + L1ME3A LINE L1 5842 6045 -125 1464 168 9 81 chrX 141848461 141848813 -20751117 - AluJb SINE Alu 0 312 1 1009 211 49 23 chrX 141848813 141848890 -20751040 + L1ME3A LINE L1 6045 6119 -51 208 254 85 0 chrX 141849252 141849311 -20750619 + MIR SINE MIR 43 106 -102 2394 82 10 3 chrX 141850074 141850379 -20749551 - AluSx SINE Alu -5 307 1 242 113 0 94 chrX 141850452 141850505 -20749425 + L2 LINE L2 3216 3263 -9 1744 164 4 4 chrX 141850889 141851169 -20748761 - AluJo SINE Alu -22 290 11 243 268 0 18 chrX 141852477 141852533 -20747397 + MIR3 SINE MIR 111 165 -43 979 183 122 0 chrX 141852578 141852808 -20747122 - L1MA10 LINE L1 0 6334 6077 366 179 0 0 chrX 141852808 141852875 -20747055 + L1MA7 LINE L1 5857 5923 -368 427 67 0 0 chrX 141852878 141852938 -20746992 - L1MD2 LINE L1 -14 6345 6286 4345 152 58 20 chrX 141852939 141853961 -20745969 + L1MB2 LINE L1 5098 6164 -7 2182 134 10 0 chrX 141853966 141854273 -20745657 - AluSx SINE Alu -2 310 1 4938 153 26 18 chrX 141854303 141855264 -20744666 - L1MD1 LINE L1 -53 6189 5222 1232 249 33 2 chrX 141855262 141855656 -20744274 - L1MD1 LINE L1 -1644 4502 4097 * 2259 102 0 3 chrX 141855751 141856045 -20743885 + AluSx SINE Alu 1 293 -19 331 62 0 86 chrX 141856372 141856453 -20743477 + (TA)n Simple_repeat Simple_repeat 2 75 0 1844 150 10 29 chrX 141856589 141856895 -20743035 - AluSx SINE Alu -12 300 1 19936 33 0 3 chrX 141856962 141860167 -20739763 - L1PA4 LINE L1 0 6155 2957 4328 53 1 3 chrX 141860167 141861169 -20738761 + L1PA5 LINE L1 4769 6138 -16 1039 102 0 0 chrX 141861169 141861307 -20738623 + L1PA5 LINE L1 6004 6150 -4 4328 53 1 3 chrX 141861307 141861320 -20738610 + L1PA5 LINE L1 6138 6150 -4 670 272 51 14 chrX 141861327 141861544 -20738386 + MLT1E2 LTR MaLR 400 624 -2 385 219 19 19 chrX 141861547 141861652 -20738278 - ERVL LTR ERVL -2045 3719 3615 1292 310 50 9 chrX 141861662 141862297 -20737633 - ERVL LTR ERVL -2639 3125 2465 1610 135 4 8 chrX 141862297 141862541 -20737389 - AluSx SINE Alu -69 243 1 836 158 7 0 chrX 141862541 141862680 -20737250 - AluSq/x SINE Alu -172 141 2 1181 188 0 59 chrX 141862725 141863013 -20736917 + L1PA16 LINE L1 5893 6163 -3 4501 86 9 3 chrX 141863620 141864270 -20735660 - L1MA3 LINE L1 0 6305 5652 1729 134 18 39 chrX 141865143 141865451 -20734479 + AluJo SINE Alu 5 306 0 522 267 82 5 chrX 141865490 141865685 -20734245 + MLT1E2 LTR MaLR 175 384 -242 1161 226 48 3 chrX 141865686 141865996 -20733934 + L1M4 LINE L1 5376 5699 -485 530 326 40 7 chrX 141865999 141866272 -20733658 - ERVL LTR ERVL -4670 1094 813 725 315 13 23 chrX 141866305 141866357 -20733573 - ERVL LTR ERVL -5061 703 652 1510 158 142 12 chrX 141866357 141866680 -20733250 + MLT1A1 LTR MaLR 1 365 0 725 315 13 23 chrX 141866680 141866929 -20733001 - ERVL LTR ERVL -5112 652 405 578 96 12 0 chrX 141867072 141867155 -20732775 + AluJ/FLAM SINE Alu 5 88 -224 8140 51 9 8 chrX 141867208 141868214 -20731716 + LTR13 LTR ERVK 1 1007 0 1803 98 15 174 chrX 141868305 141868714 -20731216 - LTR14B LTR ERVK 0 608 1 489 86 49 16 chrX 141868717 141868852 -20731078 - HERVK14 LTR ERVK 0 5945 5835 294 220 0 18 chrX 141868852 141868927 -20731003 - MER41C LTR ERV1 -493 61 1 8648 52 43 2 chrX 141868927 141870474 -20729456 - HERVK14 LTR ERVK -186 5759 4081 194 57 57 0 chrX 141870488 141870523 -20729407 + (TTTAA)n Simple_repeat Simple_repeat 4 40 0 3062 37 5 3 chrX 141870523 141870890 -20729040 - L1PA4 LINE L1 -8 6147 5777 262 255 152 44 chrX 141871069 141871273 -20728657 - L1ME4a LINE L1 -38 6083 5858 494 262 139 23 chrX 141872471 141872643 -20727287 - MIR3 SINE MIR -7 201 10 432 256 149 18 chrX 141872806 141872974 -20726956 - L2 LINE L2 0 3313 3124 248 277 40 17 chrX 141873233 141873388 -20726542 + MLT1J2 LTR MaLR 277 387 -22 182 322 0 44 chrX 141873458 141873548 -20726382 - L2 LINE L2 -12 3260 3175 1185 104 0 59 chrX 141873654 141873692 -20726238 + L1MA9 LINE L1 6074 6113 -199 790 198 0 0 chrX 141873692 141873818 -20726112 + FLAM_A SINE Alu 2 127 -6 1185 104 0 59 chrX 141873818 141873999 -20725931 + L1MA9 LINE L1 6113 6280 -32 207 388 12 0 chrX 141874165 141874250 -20725680 - L2 LINE L2 0 3272 3187 467 176 114 23 chrX 141874527 141874622 -20725308 + MLT2D LTR ERVL 263 375 -39 339 25 0 0 chrX 141874622 141874662 -20725268 + (CA)n Simple_repeat Simple_repeat 2 41 0 467 176 114 23 chrX 141874662 141874697 -20725233 + MLT2D LTR ERVL 375 405 -9 311 368 88 35 chrX 141874697 141875015 -20724915 - L2 LINE L2 -2055 1259 925 1852 152 48 114 chrX 141875042 141875542 -20724388 + MLT1C LTR MaLR 1 467 0 183 283 43 76 chrX 141876383 141876475 -20723455 - L2 LINE L2 -87 3185 3097 898 233 0 0 chrX 141876476 141876656 -20723274 - MIR SINE MIR -65 197 18 544 295 55 32 chrX 141877066 141877283 -20722647 - MIR SINE MIR -27 235 14 233 328 0 0 chrX 141877543 141877604 -20722326 + (TG)n Simple_repeat Simple_repeat 2 62 0 189 0 0 0 chrX 141877699 141877720 -20722210 + (CA)n Simple_repeat Simple_repeat 2 22 0 457 295 86 89 chrX 141878572 141878921 -20721009 - L2 LINE L2 -31 3241 2894 2063 155 28 0 chrX 141878941 141879303 -20720627 - L1MA9 LINE L1 -246 6066 5695 363 352 100 12 chrX 141879849 141880073 -20719857 + MIR SINE MIR 13 252 -10 253 63 48 32 chrX 141880122 141880185 -20719745 + (TA)n Simple_repeat Simple_repeat 2 65 0 204 311 133 83 chrX 141880970 141881513 -20718417 - L2 LINE L2 -568 2746 2177 1562 243 88 35 chrX 141881706 141882361 -20717569 - L1MDa LINE L1 -5360 1078 389 388 273 109 0 chrX 141882960 141883088 -20716842 - MIR SINE MIR -50 212 71 809 107 9 0 chrX 141933741 141933853 -20666077 + AluJb SINE Alu 199 311 -1 296 186 29 43 chrX 141933853 141933923 -20666007 - L1MDa LINE L1 -6334 206 138 1125 273 39 34 chrX 141933933 141934321 -20665609 - MER93a LTR ERV1 -8 394 5 315 269 32 0 chrX 141934372 141934465 -20665465 - L1ME1 LINE L1 -13 6651 6556 251 128 0 0 chrX 141934465 141934504 -20665426 - MER3 DNA MER1_type -160 49 11 3606 165 41 18 chrX 141934610 141935215 -20664715 - LTR31 LTR ERV1 0 619 1 862 189 0 0 chrX 141935263 141935422 -20664508 - L1ME1 LINE L1 -243 6419 6261 363 238 41 5 chrX 141935430 141935543 -20664387 + MLT1F LTR MaLR 1 84 -458 1510 226 128 23 chrX 141935558 141936389 -20663541 - L1ME1 LINE L1 -668 5996 4801 299 130 74 0 chrX 141936374 141936428 -20663502 - L1ME1 LINE L1 -3699 2945 2888 * 1875 269 9 7 chrX 141936429 141936887 -20663043 - L1ME1 LINE L1 -6083 459 1 2026 176 101 36 chrX 141936907 141937374 -20662556 - L1M4b LINE L1 -5482 1377 881 * 2350 176 51 0 chrX 141937372 141937821 -20662109 - L1MB8 LINE L1 -188 5990 5519 248 208 14 14 chrX 141937925 141937997 -20661933 - L1MB8 LINE L1 -2177 3969 3898 456 188 36 97 chrX 141937997 141938162 -20661768 - MER34 LTR ERV1 0 542 388 216 273 0 0 chrX 141938164 141938230 -20661700 + A-rich Low_complexity Low_complexity 1 66 0 25 51 0 0 chrX 141938303 141938342 -20661588 + AT_rich Low_complexity Low_complexity 1 39 0 383 321 25 37 chrX 141938368 141938530 -20661400 - L2 LINE L2 -1646 1668 1509 801 331 47 6 chrX 141938540 141938881 -20661049 - L2 LINE L2 -2104 1210 856 7687 81 2 2 chrX 141939048 141940016 -20659914 - LTR5 LTR ERVK 0 969 2 2169 101 0 7 chrX 141940017 141940304 -20659626 - AluSg SINE Alu -25 285 1 3278 284 41 27 chrX 141940405 141941293 -20658637 - ERVL LTR ERVL -484 5280 4373 2118 182 3 27 chrX 141941293 141941667 -20658263 + MLT1A1 LTR MaLR 1 365 0 3278 284 41 27 chrX 141941667 141941851 -20658079 - ERVL LTR ERVL -1391 4373 4193 317 320 0 24 chrX 141941915 141942040 -20657890 - ERVL LTR ERVL -2655 3109 2988 276 30 0 0 chrX 141942252 141942285 -20657645 + (TG)n Simple_repeat Simple_repeat 2 34 0 213 155 52 0 chrX 141942711 141942769 -20657161 + GA-rich Low_complexity Low_complexity 2 62 0 623 329 79 35 chrX 141943551 141944323 -20655607 + ERVL LTR ERVL 4443 5245 -409 457 324 53 12 chrX 141944546 141944716 -20655214 + LTR33 LTR ERVL 4 180 -341 2153 114 0 10 chrX 141945800 141946097 -20653833 + AluSg SINE Alu 1 294 -16 5178 161 14 12 chrX 141946319 141947204 -20652726 + MER49 LTR ERV1 1 886 -37 2403 85 3 0 chrX 141947235 141947541 -20652389 + AluSg SINE Alu 1 307 -3 227 143 0 18 chrX 141948776 141948832 -20651098 + (CA)n Simple_repeat Simple_repeat 1 55 0 276 287 139 10 chrX 141949412 141949513 -20650417 - MIR SINE MIR -148 114 1 3056 90 64 9 chrX 141950536 141950579 -20649351 - MLT2A1 LTR ERVL 0 444 405 378 0 0 0 chrX 141950579 141950621 -20649309 + (TA)n Simple_repeat Simple_repeat 2 43 0 3056 90 64 9 chrX 141950621 141950998 -20648932 - MLT2A1 LTR ERVL -39 405 1 6955 50 13 14 chrX 141950998 141951578 -20648352 - HERVL-A1 LTR ERVL 0 5654 5074 2331 72 28 0 chrX 141951578 141951869 -20648061 - AluSx SINE Alu -13 299 1 6955 50 13 14 chrX 141951869 141952139 -20647791 - HERVL-A1 LTR ERVL -580 5074 4805 2224 101 10 10 chrX 141952151 141952457 -20647473 - AluSq SINE Alu -7 306 1 1652 80 76 12 chrX 141952479 141952729 -20647201 - MLT2A1 LTR ERVL -178 266 1 829 154 0 15 chrX 141953169 141953305 -20646625 + AluJo SINE Alu 1 134 -178 252 0 0 0 chrX 141953794 141953822 -20646108 + (TG)n Simple_repeat Simple_repeat 2 29 0 1138 248 26 49 chrX 141954800 141955191 -20644739 - LTR16C LTR ERVL -14 477 96 617 302 11 6 chrX 141955650 141955829 -20644101 - LTR33 LTR ERVL -341 180 1 817 276 44 67 chrX 141956059 141956481 -20643449 - ERVL LTR ERVL -202 5283 4903 1326 197 38 21 chrX 141956990 141957280 -20642650 + MLT2D LTR ERVL 2 296 -118 1460 146 18 9 chrX 141957296 141957522 -20642408 - MER4A LTR ERV1 0 664 437 265 131 49 82 chrX 141957517 141957578 -20642352 - MER4E LTR ERV1 -204 575 517 * 11187 32 3 1 chrX 141957578 141958926 -20641004 - L1P LINE L1 -2282 3864 2514 3442 31 3 5 chrX 141958926 141959305 -20640625 + L1PA4 LINE L1 5765 6152 -3 351 115 19 0 chrX 141959325 141959377 -20640553 - MER4A LTR ERV1 -351 313 261 702 101 0 10 chrX 141959377 141959476 -20640454 - MER4A LTR ERV1 -566 98 1 432 165 10 62 chrX 141959480 141959577 -20640353 + MLT2D LTR ERVL 365 456 -64 262 141 51 26 chrX 141959589 141959667 -20640263 + (TA)n Simple_repeat Simple_repeat 2 81 0 243 200 0 0 chrX 141959705 141959750 -20640180 - L1MC4 LINE L1 -1340 6702 6658 282 113 0 0 chrX 141959753 141959806 -20640124 - LTR66 LTR ERVL -162 448 396 * 332 113 0 81 chrX 141959789 141959851 -20640079 + MLT2B1 LTR ERVL 464 520 0 26 0 0 0 chrX 141959856 141959882 -20640048 + AT_rich Low_complexity Low_complexity 1 26 0 1714 228 49 53 chrX 141961678 141962147 -20637783 - MLT1C LTR MaLR 0 467 1 208 147 0 0 chrX 141962818 141962852 -20637078 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 226 324 69 0 chrX 141963305 141963407 -20636523 + MIR SINE MIR 110 218 -44 633 191 118 13 chrX 141964149 141964301 -20635629 - MER45A DNA AcHobo 0 178 11 3496 147 7 29 chrX 141966502 141967054 -20632876 - MLT2B3 LTR ERVL -13 541 2 31 0 0 0 chrX 141967140 141967171 -20632759 + AT_rich Low_complexity Low_complexity 1 31 0 377 228 81 16 chrX 141967390 141967513 -20632417 - MIR SINE MIR -4 258 128 21 36 0 0 chrX 141967874 141967902 -20632028 + AT_rich Low_complexity Low_complexity 1 28 0 3073 103 23 23 chrX 141968870 141969298 -20630632 - MSTA LTR MaLR 0 428 1 1733 167 3 41 chrX 141970219 141970537 -20629393 - AluJo SINE Alu -6 306 1 2234 116 7 0 chrX 141971101 141971402 -20628528 - AluSx SINE Alu -9 303 1 2115 121 0 0 chrX 141972070 141972359 -20627571 - AluSx SINE Alu -23 289 1 1078 223 93 62 chrX 141972762 141973147 -20626783 + MER57A LTR ERV1 3 399 -4 698 194 8 39 chrX 141973149 141973278 -20626652 - FLAM_A SINE Alu -17 125 1 2790 142 43 2 chrX 141973557 141974044 -20625886 - L1MA9 LINE L1 -24 6288 5782 15519 122 20 30 chrX 141974044 141976244 -20623686 - Tigger1 DNA MER2_type 0 2418 198 1876 122 119 29 chrX 141976244 141976588 -20623342 + THE1C LTR MaLR 1 375 0 10325 126 14 42 chrX 141976591 141978215 -20621715 + THE1C-int LTR MaLR 4 1580 0 2094 147 41 22 chrX 141978215 141978583 -20621347 + THE1C LTR MaLR 1 375 0 15519 122 20 30 chrX 141978583 141978819 -20621111 - Tigger1 DNA MER2_type -2220 198 1 2375 150 38 21 chrX 141978825 141979246 -20620684 - L1MA9 LINE L1 -527 5785 5358 2478 68 10 0 chrX 141979249 141979557 -20620373 - AluY SINE Alu 0 311 1 1183 277 109 28 chrX 141979646 141980141 -20619789 - MLT1H1 LTR MaLR -11 544 10 2201 111 3 3 chrX 141980281 141980578 -20619352 + AluSx SINE Alu 1 297 -15 230 267 192 20 chrX 141982047 141982302 -20617628 + L1MB8 LINE L1 2732 3030 -3116 282 220 180 0 chrX 141982329 141982429 -20617501 - MIR SINE MIR -11 251 134 200 268 0 0 chrX 141983706 141983747 -20616183 + (TG)n Simple_repeat Simple_repeat 2 42 0 461 236 62 42 chrX 141984041 141984185 -20615745 + MER103 DNA DNA 9 155 -11 1547 266 74 31 chrX 141987567 141988560 -20611370 + L1MEc LINE L1 1738 2725 -3490 * 3824 190 24 16 chrX 141988548 141989025 -20610905 + L1MB8 LINE L1 4802 5274 -904 2401 144 9 77 chrX 141989025 141989491 -20610439 + Tigger2a DNA MER2_type 1 434 0 3824 190 24 16 chrX 141989491 141990356 -20609574 + L1MB8 LINE L1 5274 6177 -1 1299 82 11 11 chrX 141990663 141990847 -20609083 + L1MA2 LINE L1 6121 6304 0 574 234 69 0 chrX 141991811 141991956 -20607974 + L1ME LINE L1 5499 5653 -468 243 130 37 56 chrX 141992184 141992238 -20607692 - L1MA5 LINE L1 -333 5967 5915 1030 92 0 0 chrX 141992238 141992380 -20607550 + L1MA5 LINE L1 6159 6300 0 1407 227 45 5 chrX 141992667 141993105 -20606825 + MLT1F1 LTR MaLR 3 558 -9 255 31 0 0 chrX 141994352 141994384 -20605546 + (T)n Simple_repeat Simple_repeat 1 32 0 753 319 62 68 chrX 141994528 141995476 -20604454 + L2 LINE L2 2323 3272 0 2062 101 76 3 chrX 141995758 141996046 -20603884 + AluSx SINE Alu 1 309 -3 282 223 0 37 chrX 141996150 141996262 -20603668 - MER5A DNA MER1_type 0 189 1 1250 225 42 13 chrX 141996972 141997283 -20602647 - MER33 DNA MER1_type 0 324 5 1215 244 128 23 chrX 141997649 141998079 -20601851 + MER20B DNA MER1_type 160 634 -149 577 229 128 22 chrX 141998097 141998276 -20601654 - MER58C DNA MER1_type -3 212 15 561 177 18 0 chrX 141998301 141998414 -20601516 + MER20B DNA MER1_type 669 783 0 429 239 200 19 chrX 141999283 141999438 -20600492 - MER3 DNA MER1_type -4 205 23 735 237 30 35 chrX 141999838 142000036 -20599894 - MIR SINE MIR -1 261 65 367 226 206 13 chrX 142000371 142000526 -20599404 + MIR SINE MIR 72 256 -6 21 0 0 0 chrX 142001078 142001099 -20598831 + GC_rich Low_complexity Low_complexity 1 21 0 275 348 37 30 chrX 142001540 142001704 -20598226 - MER5A DNA MER1_type 0 189 25 328 102 20 0 chrX 142002808 142002857 -20597073 - HERVL LTR ERVL -3837 1817 1768 198 0 0 0 chrX 142002951 142002973 -20596957 + (TTG)n Simple_repeat Simple_repeat 3 24 0 346 277 8 34 chrX 142003076 142003195 -20596735 + MIR SINE MIR 31 146 -116 7766 205 44 5 chrX 142004151 142005627 -20594303 - HERVL LTR ERVL -2940 2824 1292 325 298 165 8 chrX 142006596 142006717 -20593213 - MER91C DNA MER1_type 0 140 1 496 305 16 31 chrX 142007255 142007474 -20592456 + GA-rich Low_complexity Low_complexity 1 215 0 26 82 0 0 chrX 142008823 142008884 -20591046 + AT_rich Low_complexity Low_complexity 1 61 0 282 213 26 49 chrX 142009297 142009401 -20590529 + MIR SINE MIR 16 116 -92 1254 236 193 30 chrX 142009435 142009682 -20590248 - MER76 LTR ERV -181 507 302 180 77 0 0 chrX 142009682 142009708 -20590222 + (CTAGGG)n Simple_repeat Simple_repeat 2 27 0 1254 236 193 30 chrX 142009708 142009896 -20590034 - MER76 LTR ERV -386 302 1 1982 183 23 3 chrX 142009958 142010308 -20589622 - MLT1A1 LTR MaLR -1 364 8 272 241 62 74 chrX 142010427 142010589 -20589341 + L1ME3A LINE L1 5962 6121 -49 188 327 64 26 chrX 142011033 142011189 -20588741 + L2 LINE L2 2745 2906 -408 424 256 5 128 chrX 142012870 142013065 -20586865 + LTR33 LTR ERVL 10 180 -341 180 233 14 68 chrX 142013088 142013161 -20586769 + L2 LINE L2 1840 1908 -1406 276 77 0 0 chrX 142013210 142013249 -20586681 + (TC)n Simple_repeat Simple_repeat 2 40 0 1973 167 55 14 chrX 142013686 142014034 -20585896 - MLT1A1 LTR MaLR -3 362 1 22 56 0 0 chrX 142015618 142015654 -20584276 + AT_rich Low_complexity Low_complexity 1 36 0 223 185 0 19 chrX 142016039 142016093 -20583837 + (CA)n Simple_repeat Simple_repeat 1 53 0 1472 159 29 4 chrX 142016789 142017055 -20582875 + AluSx SINE Alu 32 303 0 790 256 29 5 chrX 142017754 142017961 -20581969 - MIR SINE MIR -19 243 32 480 290 95 12 chrX 142019187 142019356 -20580574 + MIR SINE MIR 15 197 -65 6778 106 98 164 chrX 142019358 142021176 -20578754 - pTR5 LTR ERV1 0 2438 741 280 246 0 0 chrX 142021221 142021286 -20578644 - MIR SINE MIR -19 243 179 294 329 61 30 chrX 142022118 142022282 -20577648 + MIR SINE MIR 16 184 -78 352 155 14 14 chrX 142022343 142022414 -20577516 + LTR52 LTR ERVL 261 331 -90 348 24 0 0 chrX 142022417 142022458 -20577472 + (TG)n Simple_repeat Simple_repeat 1 41 0 2725 228 42 2 chrX 142022469 142023061 -20576869 + LTR52-int LTR ERVL 1 616 -2940 3140 199 70 76 chrX 142023129 142023874 -20576056 + LTR52-int LTR ERVL 792 1531 -2025 323 77 0 19 chrX 142023874 142023926 -20576004 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3140 199 70 76 chrX 142023926 142024086 -20575844 + LTR52-int LTR ERVL 1531 1691 -1865 847 199 215 31 chrX 142024089 142024220 -20575710 - MLT1D LTR MaLR 0 505 399 3074 124 58 8 chrX 142024220 142024689 -20575241 - LTR22B LTR ERVK 0 492 1 847 199 215 31 chrX 142024689 142024818 -20575112 - MLT1D LTR MaLR -106 399 197 215 271 58 87 chrX 142024843 142025050 -20574880 + L2 LINE L2 1455 1655 -1659 30 0 0 0 chrX 142025070 142025100 -20574830 + AT_rich Low_complexity Low_complexity 1 30 0 1777 176 58 63 chrX 142025103 142025501 -20574429 + MSTD LTR MaLR 1 396 0 245 364 19 0 chrX 142025603 142025765 -20574165 + L1M4 LINE L1 3723 3887 -2259 259 214 0 0 chrX 142025944 142026003 -20573927 + HsTC2 DNA Tc2 3 61 -1837 21 57 0 0 chrX 142026016 142026051 -20573879 + AT_rich Low_complexity Low_complexity 1 35 0 2256 119 0 0 chrX 142026140 142026435 -20573495 - AluSg SINE Alu -15 295 1 29 84 0 0 chrX 142027787 142027858 -20572072 + AT_rich Low_complexity Low_complexity 1 71 0 26 30 0 0 chrX 142027891 142027924 -20572006 + AT_rich Low_complexity Low_complexity 1 33 0 33 0 0 0 chrX 142028344 142028377 -20571553 + AT_rich Low_complexity Low_complexity 1 33 0 15439 179 37 10 chrX 142028420 142034586 -20565344 + L1MA4A LINE L1 664 7000 -5 2444 132 44 30 chrX 142034599 142035032 -20564898 + L1MA8 LINE L1 5848 6286 -5 246 170 264 66 chrX 142035217 142035323 -20564607 + LTR53 LTR ERVL 1 127 -392 218 323 156 10 chrX 142037845 142037941 -20561989 - MIR SINE MIR -148 114 5 844 128 0 71 chrX 142039425 142039566 -20560364 + FLAM_C SINE Alu 1 131 -2 375 23 0 0 chrX 142040111 142040155 -20559775 + (TG)n Simple_repeat Simple_repeat 2 45 0 228 203 215 13 chrX 142041001 142041080 -20558850 + HAL1 LINE L1 1566 1660 -847 528 232 50 30 chrX 142041082 142041280 -20558650 - LTR16C LTR ERVL -10 481 280 389 297 43 51 chrX 142041273 142041529 -20558401 - LTR16C LTR ERVL -161 330 77 * 7582 80 8 2 chrX 142042738 142043701 -20556229 + LTR5 LTR ERVK 1 969 0 3315 162 24 14 chrX 142043749 142044329 -20555601 + MER49 LTR ERV1 128 713 -210 2944 118 35 6 chrX 142044340 142045104 -20554826 + THE1C-int LTR MaLR 730 1580 0 2157 109 49 78 chrX 142045104 142045489 -20554441 + THE1C LTR MaLR 1 374 -1 638 165 85 132 chrX 142045490 142045676 -20554254 + MER49 LTR ERV1 722 898 -25 2306 94 0 7 chrX 142045676 142045973 -20553957 - AluSc SINE Alu -14 295 1 638 165 85 132 chrX 142045973 142045998 -20553932 + MER49 LTR ERV1 898 923 0 4433 192 19 18 chrX 142046287 142047851 -20552079 + L1MB8 LINE L1 4615 6178 0 1074 213 58 67 chrX 142048284 142048613 -20551317 + MLT1A2 LTR MaLR 1 326 -48 206 308 32 108 chrX 142049532 142049717 -20550213 + MIR SINE MIR 3 173 -89 12432 248 38 46 chrX 142151562 142153392 -20446538 - MER66A-int LTR ERV1 -144 6532 4689 7234 94 16 13 chrX 142153392 142154343 -20445587 - LTR13 LTR ERVK 0 954 1 12432 248 38 46 chrX 142154343 142155753 -20444177 - MER66A-int LTR ERV1 -1987 4689 3270 230 250 36 0 chrX 142155753 142155809 -20444121 + MER74C LTR ERVL 17 74 -386 12432 248 38 46 chrX 142155809 142159956 -20439974 - MER66A-int LTR ERV1 -3406 3270 811 2386 121 118 18 chrX 142159956 142160345 -20439585 - MSTA LTR MaLR 0 428 1 12432 248 38 46 chrX 142160345 142161102 -20438828 - MER66A-int LTR ERV1 -5865 811 50 1403 223 112 2 chrX 142161173 142161569 -20438361 - MER66A LTR ERV1 -40 438 97 2335 137 21 21 chrX 142161581 142161918 -20438012 - MER1B DNA MER1_type 0 337 1 519 314 83 7 chrX 142161959 142162249 -20437681 - L1M4 LINE L1 -2281 3865 3554 24 0 0 0 chrX 142162252 142162276 -20437654 + AT_rich Low_complexity Low_complexity 1 24 0 2769 105 0 43 chrX 142162276 142162715 -20437215 - L1MA1 LINE L1 -104 6198 5779 2188 107 3 3 chrX 142162715 142163005 -20436925 - AluSx SINE Alu -22 290 1 767 288 57 41 chrX 142163082 142163471 -20436459 - L1M4 LINE L1 -2160 3986 3592 322 196 0 0 chrX 142163890 142163946 -20435984 - MLT1A2 LTR MaLR 0 390 335 989 152 0 18 chrX 142163946 142164110 -20435820 + MER1B DNA MER1_type 1 161 -136 * 4305 120 69 36 chrX 142164108 142164858 -20435072 - LTR1 LTR ERV1 -10 775 1 1316 143 5 0 chrX 142164901 142165090 -20434840 + MER1B DNA MER1_type 149 338 -1 288 0 0 0 chrX 142165102 142165134 -20434796 + (TA)n Simple_repeat Simple_repeat 2 33 0 1200 227 50 17 chrX 142165137 142165437 -20434493 - MLT1A2 LTR MaLR -64 310 1 1040 282 54 10 chrX 142165742 142166036 -20433894 - MLT1I LTR MaLR -5 404 98 996 68 0 30 chrX 142166349 142166482 -20433448 - AluY SINE Alu -16 295 167 455 264 36 36 chrX 142166691 142166831 -20433099 + MLT2F LTR ERVL 179 318 -345 30 0 0 61 chrX 142167064 142167092 -20432838 + AT_rich Low_complexity Low_complexity 1 26 -20 2323 55 0 0 chrX 142167092 142167365 -20432565 - AluY SINE Alu -2 309 37 30 0 0 61 chrX 142167365 142167385 -20432545 + AT_rich Low_complexity Low_complexity 26 46 0 284 162 17 77 chrX 142170011 142170128 -20429802 + (TATAA)n Simple_repeat Simple_repeat 1 110 0 837 330 47 8 chrX 142170501 142170865 -20429065 - HERV16 LTR ERVL -4617 379 2 473 259 75 47 chrX 142170903 142171046 -20428884 - LTR16A LTR ERVL -80 370 218 2125 134 10 0 chrX 142171046 142171352 -20428578 + AluJo SINE Alu 1 309 -3 473 259 75 47 chrX 142171352 142171420 -20428510 - LTR16A LTR ERVL -232 218 153 4130 18 0 0 chrX 142171742 142172186 -20427744 - L1PA3 LINE L1 -4 6151 5708 483 243 0 0 chrX 142172487 142172598 -20427332 - LTR33 LTR ERVL -1 520 410 409 300 89 43 chrX 142172613 142172870 -20427060 + MLT1I LTR MaLR 18 286 -123 818 211 34 41 chrX 142173035 142173391 -20426539 - LTR33 LTR ERVL -105 416 6 477 315 40 36 chrX 142173393 142173518 -20426412 + L1ME3 LINE L1 5358 5481 -683 2361 106 0 0 chrX 142173518 142173820 -20426110 + AluSx SINE Alu 1 302 -10 477 315 40 36 chrX 142173820 142173970 -20425960 + L1ME3 LINE L1 5481 5634 -530 238 351 40 0 chrX 142174015 142174089 -20425841 - MER91A DNA MER1_type -1 195 119 314 353 81 0 chrX 142174121 142174257 -20425673 - MER91A DNA MER1_type -28 168 22 296 151 38 0 chrX 142174268 142174321 -20425609 + L1M1 LINE L1 5704 5758 -547 3103 153 59 4 chrX 142174352 142174908 -20425022 + L1MB7 LINE L1 5598 6184 0 2425 214 35 77 chrX 142174908 142175732 -20424198 + L1ME LINE L1 4320 5109 -1037 1260 199 40 14 chrX 142175744 142176020 -20423910 + MER90 LTR ERV1 332 614 0 6392 188 17 2 chrX 142176031 142178055 -20421875 + L1PA15 LINE L1 4125 6162 -3 2017 134 71 58 chrX 142178124 142178504 -20421426 - MSTC LTR MaLR 0 428 44 837 146 82 47 chrX 142178504 142178675 -20421255 - THE1C LTR MaLR 0 375 199 407 231 19 6 chrX 142178692 142178848 -20421082 + CT-rich Low_complexity Low_complexity 4 161 0 22 0 0 0 chrX 142178862 142178884 -20421046 + AT_rich Low_complexity Low_complexity 1 22 0 1235 128 14 38 chrX 142178944 142179155 -20420775 - THE1C LTR MaLR -169 206 1 309 160 0 0 chrX 142179155 142179201 -20420729 - MSTC LTR MaLR -382 46 1 355 206 38 94 chrX 142179204 142179287 -20420643 + L1ME LINE L1 5342 5413 -946 1754 166 17 27 chrX 142179287 142179583 -20420347 - AluJb SINE Alu -19 293 1 355 206 38 94 chrX 142179583 142179659 -20420271 + L1ME LINE L1 5413 5492 -867 * 1113 246 117 0 chrX 142179632 142179949 -20419981 + L1ME3 LINE L1 5803 6156 -6 381 295 36 7 chrX 142180124 142180263 -20419667 + HsTC2 DNA Tc2 6 148 -1750 373 312 11 43 chrX 142180267 142180453 -20419477 + HsTC2 DNA Tc2 1273 1628 -270 234 316 102 0 chrX 142180897 142180995 -20418935 + L1ME LINE L1 5480 5587 -577 622 344 50 52 chrX 142180999 142181484 -20418446 - LTR16C LTR ERVL -4 487 4 604 169 62 8 chrX 142181616 142181746 -20418184 - L1M4 LINE L1 -2098 4048 3912 771 244 113 0 chrX 142181766 142181979 -20417951 - L1M4 LINE L1 -3375 2771 2535 244 225 150 17 chrX 142183412 142183532 -20416398 + L1ME LINE L1 5522 5657 -464 2236 121 0 3 chrX 142185865 142186170 -20413760 + AluSc SINE Alu 1 304 -5 275 244 48 70 chrX 142186344 142186574 -20413356 + LTR37B LTR ERV1 227 451 -17 334 83 17 100 chrX 142188629 142188689 -20411241 + L1MA2 LINE L1 6172 6226 -78 1458 114 26 4 chrX 142188689 142188915 -20411015 + L1MA2 LINE L1 6069 6301 -3 21 36 0 0 chrX 142188915 142188943 -20410987 + AT_rich Low_complexity Low_complexity 1 28 0 911 223 156 30 chrX 142188998 142189113 -20410817 - MLT1E LTR MaLR -290 303 204 5706 148 26 18 chrX 142189113 142190074 -20409856 - LTR5 LTR ERVK 0 969 1 911 223 156 30 chrX 142190074 142190227 -20409703 - MLT1E LTR MaLR -389 204 1 640 244 28 6 chrX 142190227 142190403 -20409527 - L1ME LINE L1 -377 5789 5610 * 2375 210 73 46 chrX 142190402 142190526 -20409404 + L1M4 LINE L1 3943 4062 -2084 1481 77 43 0 chrX 142190526 142190734 -20409196 + L1PA13 LINE L1 5944 6160 -3 2375 210 73 46 chrX 142190734 142191441 -20408489 + L1M4 LINE L1 4062 4797 -1349 1296 162 9 0 chrX 142191441 142191651 -20408279 + MER2 DNA MER2_type 1 212 -133 5264 88 4 1 chrX 142191675 142192399 -20407531 - L1PB2 LINE L1 -3 6148 5423 4078 9 0 0 chrX 142192409 142192860 -20407070 - L1HS LINE L1 0 6155 5705 699 13 0 0 chrX 142192859 142192936 -20406994 + L1P1 LINE L1 5641 5717 -438 * 4022 185 54 5 chrX 142192931 142193990 -20405940 - L1PB2 LINE L1 -713 5441 4333 759 190 14 0 chrX 142193979 142194121 -20405809 + L1P LINE L1 3712 3855 -2291 * 605 244 0 0 chrX 142194133 142194268 -20405662 + L1 LINE L1 4189 4323 -1823 469 184 13 0 chrX 142194278 142194354 -20405576 + MER2 DNA MER2_type 269 345 0 2245 216 25 12 chrX 142194354 142194948 -20404982 + L1ME LINE L1 4796 5397 -749 518 160 82 180 chrX 142195048 142195254 -20404676 + L1ME LINE L1 5408 5593 -573 * 636 294 96 22 chrX 142195231 142195503 -20404427 - L1ME3 LINE L1 -114 6048 5757 324 280 47 0 chrX 142195503 142195610 -20404320 + L1 LINE L1 3759 3870 -2276 1518 261 133 35 chrX 142195620 142195696 -20404234 + MLT1E2 LTR MaLR 1 68 -558 7344 45 30 0 chrX 142195696 142196567 -20403363 - MER11D LTR ERVK 0 897 1 1518 261 133 35 chrX 142196567 142197060 -20402870 + MLT1E2 LTR MaLR 68 626 0 242 193 0 18 chrX 142197062 142197119 -20402811 + L1 LINE L1 3880 3935 -2211 641 230 46 59 chrX 142197313 142197552 -20402378 + L1MC4a LINE L1 7280 7690 -305 393 268 49 29 chrX 142199460 142199665 -20400265 - LTR37B LTR ERV1 -4 464 256 1958 32 8 16 chrX 142200043 142200289 -20399641 - L1PA4 LINE L1 0 6155 5912 189 0 0 0 chrX 142201430 142201451 -20398479 + (A)n Simple_repeat Simple_repeat 1 21 0 232 202 71 21 chrX 142203083 142203194 -20396736 + MIR SINE MIR 101 218 -44 680 203 24 0 chrX 142204312 142204435 -20395495 - FLAM_C SINE Alu -17 126 1 215 211 0 0 chrX 142205451 142205489 -20394441 + (ATGGTG)n Simple_repeat Simple_repeat 1 38 0 794 174 62 36 chrX 142210697 142210892 -20389038 - MER67C LTR ERV1 -510 200 1 2437 77 0 3 chrX 142213239 142213539 -20386391 + AluSx SINE Alu 1 299 -13 1891 132 0 4 chrX 142214245 142214511 -20385419 - AluJo SINE Alu -39 273 9 23 0 0 0 chrX 142214955 142214978 -20384952 + AT_rich Low_complexity Low_complexity 1 23 0 380 243 0 29 chrX 142215127 142215230 -20384700 - MIR SINE MIR -147 115 16 282 274 157 13 chrX 142216600 142216753 -20383177 + L1M4 LINE L1 3743 3917 -2229 285 102 51 0 chrX 142217092 142217151 -20382779 + (CATA)n Simple_repeat Simple_repeat 3 64 0 2113 132 0 0 chrX 142217198 142217493 -20382437 - AluSx SINE Alu -17 295 1 908 247 65 7 chrX 142217550 142217825 -20382105 + L2 LINE L2 2364 2654 -660 738 242 0 0 chrX 142217841 142218006 -20381924 - L1ME LINE L1 -475 5695 5531 763 208 35 35 chrX 142218862 142219093 -20380837 - MLT1H LTR MaLR -317 232 2 313 264 0 0 chrX 142219816 142219888 -20380042 - MER103 DNA DNA -47 119 48 2305 147 65 22 chrX 142219894 142220103 -20379827 - MSTB1 LTR MaLR 0 432 234 399 41 0 0 chrX 142220103 142220152 -20379778 + (GA)n Simple_repeat Simple_repeat 1 49 0 2305 147 65 22 chrX 142220152 142220356 -20379574 - MSTB1 LTR MaLR -198 234 1 254 239 15 15 chrX 142220623 142220690 -20379240 - MIR3 SINE MIR -49 159 93 869 136 6 13 chrX 142220940 142221086 -20378844 + MLT1B LTR MaLR 263 390 0 391 283 68 81 chrX 142221231 142221428 -20378502 + ERVL LTR ERVL 1743 1934 -3720 2125 114 3 23 chrX 142221428 142221734 -20378196 + AluSx SINE Alu 1 300 -12 391 283 68 81 chrX 142221734 142221921 -20378009 + ERVL LTR ERVL 1934 2122 -3532 414 306 32 21 chrX 142222245 142222431 -20377499 + ERVL LTR ERVL 2168 2355 -3299 432 306 20 14 chrX 142222437 142222584 -20377346 + ERVL LTR ERVL 3064 3211 -2443 293 321 75 0 chrX 142223002 142223136 -20376794 + ERVL LTR ERVL 5119 5262 -502 2578 29 3 23 chrX 142224816 142225124 -20374806 + AluY SINE Alu 1 302 -9 2060 145 0 3 chrX 142225170 142225481 -20374449 + AluJb SINE Alu 1 310 -2 2257 86 0 80 chrX 142225715 142226052 -20373878 - AluSg SINE Alu 0 310 1 445 190 51 51 chrX 142226166 142226252 -20373678 + MIR SINE MIR 107 195 -67 2415 70 28 0 chrX 142226252 142226539 -20373391 + AluSx SINE Alu 1 295 -17 445 190 51 51 chrX 142226539 142226589 -20373341 + MIR SINE MIR 194 243 -19 413 167 71 131 chrX 142226596 142226848 -20373082 - L1MC4a LINE L1 -173 5948 5712 1995 154 0 0 chrX 142226972 142227271 -20372659 - AluJb SINE Alu -13 299 1 2161 99 0 7 chrX 142227406 142227729 -20372201 - AluSx SINE Alu 0 312 1 438 270 59 36 chrX 142227978 142228200 -20371730 - HAL1 LINE L1 -13 2494 2268 257 299 117 61 chrX 142228740 142229004 -20370926 - HAL1 LINE L1 -1484 1023 745 400 256 6 62 chrX 142230109 142230269 -20369661 - L1MC4a LINE L1 -1978 5830 5680 247 222 144 11 chrX 142230443 142230533 -20369397 - L1MC4a LINE L1 -637 5484 5383 2231 99 23 0 chrX 142230768 142231070 -20368860 + AluSx SINE Alu 3 311 -1 985 241 117 16 chrX 142231151 142231537 -20368393 - L1ME LINE L1 -304 5817 5393 808 173 0 8 chrX 142231690 142231823 -20368107 + FLAM_A SINE Alu 2 133 0 1806 163 7 10 chrX 142231894 142232189 -20367741 + AluJb SINE Alu 1 294 -18 1392 169 4 12 chrX 142231947 142232201 -20367729 + AluJb SINE Alu 55 306 -6 383 270 111 48 chrX 142232201 142232265 -20367665 - L1MC4a LINE L1 -611 5563 5505 25 65 0 0 chrX 142232265 142232311 -20367619 + AT_rich Low_complexity Low_complexity 1 46 0 190 0 0 0 chrX 142232318 142232339 -20367591 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2279 95 0 0 chrX 142232339 142232622 -20367308 - AluSx SINE Alu -29 283 1 383 270 111 48 chrX 142232622 142232692 -20367238 - L1MC4a LINE L1 -673 5501 5363 2497 43 0 3 chrX 142232904 142233206 -20366724 + AluY SINE Alu 1 301 -10 1437 187 0 22 chrX 142233494 142233616 -20366314 + AluJo SINE Alu 1 124 -188 1057 92 18 0 chrX 142233616 142233779 -20366151 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 1437 187 0 22 chrX 142233779 142233934 -20365996 + AluJo SINE Alu 124 272 -40 243 0 0 0 chrX 142233936 142233963 -20365967 + (TC)n Simple_repeat Simple_repeat 2 28 0 248 213 113 0 chrX 142233971 142234051 -20365879 + L1MC4 LINE L1 6614 6702 -1340 916 269 154 18 chrX 142234471 142234868 -20365062 + MLT1H LTR MaLR 97 547 -2 1505 281 60 13 chrX 142235046 142235513 -20364417 + ERVL LTR ERVL 1800 2288 -3476 1154 249 19 0 chrX 142235525 142235782 -20364148 - MIR SINE MIR 0 262 1 425 294 20 13 chrX 142235783 142235936 -20363994 + ERVL LTR ERVL 2292 2445 -3319 * 639 243 14 7 chrX 142235931 142236079 -20363851 + ERVL LTR ERVL 3451 3599 -2055 2571 126 2 20 chrX 142236080 142236346 -20363584 + MLT1B LTR MaLR 1 259 -131 1666 193 16 53 chrX 142236346 142236725 -20363205 - MLT1A1 LTR MaLR 0 365 1 2571 126 2 20 chrX 142236725 142236855 -20363075 + MLT1B LTR MaLR 259 390 0 1637 257 102 48 chrX 142236880 142237529 -20362401 + ERVL LTR ERVL 3661 4344 -1420 537 67 13 0 chrX 142237549 142237624 -20362306 + MER41A LTR ERV1 398 473 -81 324 309 111 17 chrX 142237724 142237905 -20362025 + ERVL LTR ERVL 4374 4571 -914 761 284 50 19 chrX 142237935 142238196 -20361734 + ERVL LTR ERVL 4848 5116 -648 545 245 29 39 chrX 142238254 142238458 -20361472 + ERVL LTR ERVL 5204 5405 -359 345 82 0 0 chrX 142238458 142238507 -20361423 + (TG)n Simple_repeat Simple_repeat 2 50 0 5111 144 13 3 chrX 142238974 142240471 -20359459 + L1PB2 LINE L1 4464 5973 -178 2381 64 0 0 chrX 142240472 142240769 -20359161 + AluSx SINE Alu 1 297 -15 4340 179 46 11 chrX 142240771 142241758 -20358172 + L1 LINE L1 2764 3784 -2362 1683 199 24 34 chrX 142241950 142242418 -20357512 + L1ME1 LINE L1 4744 5206 -940 1464 227 29 71 chrX 142242438 142242919 -20357011 - LTR40c LTR ERVL -4 461 1 5041 188 72 21 chrX 142242921 142243496 -20356434 - HERVL40 LTR ERVL -4 5526 4877 2206 99 0 10 chrX 142243496 142243810 -20356120 + AluY SINE Alu 1 311 0 5041 188 72 21 chrX 142243810 142244240 -20355690 - HERVL40 LTR ERVL -653 4877 4470 4330 183 78 37 chrX 142244208 142245156 -20354774 - HERVL40 LTR ERVL -1405 4125 3139 * 966 164 0 47 chrX 142245151 142245322 -20354608 - HERVL40 LTR ERVL -3318 2212 2050 * 615 247 78 30 chrX 142245321 142245552 -20354378 - HERVL40 LTR ERVL -3913 1617 1376 * 1327 174 195 73 chrX 142245819 142245982 -20353948 - HERVL40 LTR ERVL -4136 1394 1252 2256 103 7 0 chrX 142245982 142246292 -20353638 + AluSx SINE Alu 1 312 0 1327 174 195 73 chrX 142246292 142246553 -20353377 - HERVL40 LTR ERVL -4278 1252 918 2143 125 42 31 chrX 142246683 142247043 -20352887 + THE1B LTR MaLR 1 364 0 2199 142 61 52 chrX 142247048 142247111 -20352819 - MSTA LTR MaLR 0 428 367 2064 122 0 7 chrX 142247111 142247406 -20352524 - AluSx SINE Alu -19 293 1 2199 142 61 52 chrX 142247406 142247766 -20352164 - MSTA LTR MaLR -61 367 1 464 274 30 15 chrX 142247805 142247940 -20351990 - HERVL40 LTR ERVL -5393 137 1 1698 226 62 18 chrX 142247960 142248399 -20351531 - LTR40c LTR ERVL -7 458 1 3440 208 19 47 chrX 142248402 142249129 -20350801 + L1ME1 LINE L1 5209 5908 -258 1777 120 3 108 chrX 142249129 142249292 -20350638 - AluSx SINE Alu -19 283 167 2041 119 0 3 chrX 142249292 142249585 -20350345 - AluSq SINE Alu -21 292 1 1777 120 3 108 chrX 142249585 142249737 -20350193 - AluSx SINE Alu -135 167 1 3440 208 19 47 chrX 142249737 142249890 -20350040 + L1ME1 LINE L1 5908 6064 -102 394 284 43 62 chrX 142249928 142250090 -20349840 + LTR67 LTR ERVL 104 262 -295 255 314 48 32 chrX 142250203 142250327 -20349603 + LTR67 LTR ERVL 424 549 -8 1045 180 29 34 chrX 142250575 142250814 -20349116 + MLT1H LTR MaLR 3 240 -309 378 0 0 0 chrX 142252085 142252127 -20347803 + (TG)n Simple_repeat Simple_repeat 1 42 0 273 57 0 0 chrX 142252129 142252164 -20347766 + (GA)n Simple_repeat Simple_repeat 2 36 0 457 301 30 40 chrX 142252484 142252683 -20347247 + L2 LINE L2 3105 3301 -12 469 282 42 63 chrX 142252739 142253026 -20346904 + L1ME LINE L1 5456 5736 -385 2184 110 0 0 chrX 142253037 142253347 -20346583 + AluSg SINE Alu 1 310 0 2316 68 0 26 chrX 142253350 142253702 -20346228 + AluY SINE Alu 1 344 0 1190 95 0 12 chrX 142254033 142254202 -20345728 - AluSc SINE Alu -10 299 133 2254 84 3 0 chrX 142254205 142254503 -20345427 - AluSp SINE Alu -14 299 1 2021 118 0 0 chrX 142254534 142254830 -20345100 + AluSx SINE Alu 1 296 -16 386 303 74 33 chrX 142255073 142255317 -20344613 + HERV16 LTR ERVL 929 1182 -3814 3084 98 9 7 chrX 142255320 142255747 -20344183 + MSTA LTR MaLR 1 428 0 323 371 38 11 chrX 142255820 142256054 -20343876 + HERV16 LTR ERVL 1305 1467 -3529 747 125 9 0 chrX 142256060 142256172 -20343758 + MLT1B LTR MaLR 5 117 -273 2103 112 0 3 chrX 142256441 142256736 -20343194 - AluSg SINE Alu -16 294 1 209 274 107 0 chrX 142256834 142256918 -20343012 + MIR SINE MIR 168 260 -2 199 256 184 48 chrX 142257044 142257169 -20342761 - L2 LINE L2 -13 3300 3159 387 0 0 0 chrX 142257510 142257553 -20342377 + (TG)n Simple_repeat Simple_repeat 1 43 0 1836 141 16 3 chrX 142257669 142257973 -20341957 + AluSg SINE Alu 1 308 -2 187 56 83 0 chrX 142257973 142258009 -20341921 + GA-rich Low_complexity Low_complexity 1 39 0 291 164 0 0 chrX 142258644 142258705 -20341225 + GA-rich Low_complexity Low_complexity 3 63 0 2102 99 3 3 chrX 142258766 142259058 -20340872 - AluSx SINE Alu -1 311 20 7353 50 9 7 chrX 142259255 142260711 -20339219 - SVA Other Other -876 1380 1 2118 119 0 22 chrX 142261738 142262056 -20337874 + AluSx SINE Alu 1 311 -1 2678 172 94 42 chrX 142262262 142262633 -20337297 + L1MD2 LINE L1 5682 6032 -327 1715 124 87 0 chrX 142262633 142262899 -20337031 + AluJb SINE Alu 13 301 -11 2678 172 94 42 chrX 142262899 142262996 -20336934 + L1MD2 LINE L1 6032 6122 -237 324 0 0 0 chrX 142262996 142263032 -20336898 + (CA)n Simple_repeat Simple_repeat 2 37 0 2678 172 94 42 chrX 142263032 142263191 -20336739 + L1MD2 LINE L1 6122 6344 -15 409 149 0 0 chrX 142263194 142263261 -20336669 - AluJ/FRAM SINE Alu -14 298 232 22 35 0 0 chrX 142263261 142263290 -20336640 + AT_rich Low_complexity Low_complexity 1 29 0 1971 135 20 0 chrX 142263301 142263605 -20336325 + AluSx SINE Alu 3 312 0 790 163 0 0 chrX 142263610 142263733 -20336197 - FLAM_C SINE Alu -19 124 2 1978 91 0 85 chrX 142263963 142264282 -20335648 + AluSq SINE Alu 1 292 -21 2034 96 45 3 chrX 142264452 142264743 -20335187 + AluSx SINE Alu 1 303 -9 2132 104 7 0 chrX 142265706 142266005 -20333925 + AluSg SINE Alu 1 301 -9 204 40 0 0 chrX 142266005 142266030 -20333900 + (GGAGAA)n Simple_repeat Simple_repeat 1 25 0 279 0 0 0 chrX 142266458 142266489 -20333441 + (CA)n Simple_repeat Simple_repeat 2 32 0 3323 87 11 0 chrX 142266493 142266930 -20333000 - L1PA10 LINE L1 -16 6152 5711 1839 149 0 0 chrX 142267720 142268001 -20331929 - AluSx SINE Alu -31 281 1 3430 61 0 0 chrX 142268227 142268651 -20331279 - L1PA7 LINE L1 0 6154 5731 6679 116 13 20 chrX 142268654 142269248 -20330682 - L1P3 LINE L1 -5473 988 402 2385 76 0 0 chrX 142269248 142269551 -20330379 + AluY SINE Alu 1 303 -8 6679 116 13 20 chrX 142269551 142269947 -20329983 - L1P3 LINE L1 -6059 402 5 1191 200 94 108 chrX 142269951 142270311 -20329619 - MLT2B1 LTR ERVL -61 459 96 1460 184 0 41 chrX 142270311 142270605 -20329325 + AluJo SINE Alu 1 282 -30 306 0 0 0 chrX 142270614 142270648 -20329282 + (CA)n Simple_repeat Simple_repeat 2 35 0 1191 200 94 108 chrX 142270648 142270733 -20329197 - MLT2B1 LTR ERVL -432 88 10 883 201 92 70 chrX 142270849 142271133 -20328797 - MLT1D LTR MaLR -126 379 90 1467 228 31 23 chrX 142271145 142271496 -20328434 - MER4D LTR ERV1 -1 902 549 1548 164 29 11 chrX 142271531 142271806 -20328124 - MER49 LTR ERV1 -643 280 1 393 208 65 0 chrX 142271811 142271888 -20328042 - MLT1D LTR MaLR -423 82 1 2084 120 7 3 chrX 142272102 142272410 -20327520 + AluSx SINE Alu 1 309 -3 727 189 77 177 chrX 142272548 142272608 -20327322 + L2 LINE L2 2926 2990 -323 2432 68 3 0 chrX 142272608 142272918 -20327012 - AluY SINE Alu 0 311 1 727 189 77 177 chrX 142272918 142272960 -20326970 + L2 LINE L2 2990 3035 -278 2368 96 50 25 chrX 142272960 142273323 -20326607 + THE1C LTR MaLR 1 372 -3 1693 146 11 0 chrX 142273323 142273591 -20326339 - AluJb SINE Alu -33 279 9 727 189 77 177 chrX 142273591 142273686 -20326244 + L2 LINE L2 3034 3137 -176 2705 83 128 5 chrX 142273686 142274085 -20325845 - LTR7 LTR ERV1 -2 448 1 727 189 77 177 chrX 142274085 142274302 -20325628 + L2 LINE L2 3137 3301 -12 2864 108 5 19 chrX 142274304 142274721 -20325209 - MER4E LTR ERV1 0 779 369 1622 108 4 4 chrX 142274722 142274953 -20324977 - AluSx SINE Alu -12 300 70 1284 189 95 55 chrX 142274953 142275386 -20324544 - LTR7 LTR ERV1 0 450 1 570 82 0 0 chrX 142275386 142275459 -20324471 - AluSx SINE Alu -239 74 2 771 122 193 91 chrX 142275461 142275658 -20324272 - MER4B LTR ERV1 -393 217 1 631 289 117 19 chrX 142275661 142275917 -20324013 + L2 LINE L2 2542 2822 -492 346 282 12 0 chrX 142275917 142276002 -20323928 - L2 LINE L2 -1 3312 3227 369 276 309 14 chrX 142276540 142276616 -20323314 + HAL1 LINE L1 812 864 -1643 2192 123 0 0 chrX 142276616 142276924 -20323006 + AluSx SINE Alu 1 308 -4 369 276 309 14 chrX 142276924 142277057 -20322873 + HAL1 LINE L1 864 1083 -1424 2351 57 0 13 chrX 142277165 142277463 -20322467 - AluY SINE Alu -17 294 1 188 212 202 30 chrX 142277779 142277878 -20322052 - MIR3 SINE MIR -11 197 82 1614 135 19 109 chrX 142278059 142278259 -20321671 - AluJb SINE Alu 0 303 141 2049 101 0 25 chrX 142278259 142278577 -20321353 - AluSg SINE Alu 0 310 1 1614 135 19 109 chrX 142278577 142278707 -20321223 - AluJb SINE Alu -162 141 1 2315 95 0 0 chrX 142278917 142279223 -20320707 + AluSx SINE Alu 1 306 -6 252 232 50 40 chrX 142279415 142279514 -20320416 + MIR SINE MIR 137 236 -26 2302 79 0 19 chrX 142279632 142279947 -20319983 + AluSg SINE Alu 1 309 -1 2081 121 0 7 chrX 142279957 142280262 -20319668 + AluSx SINE Alu 1 303 -9 1760 138 7 7 chrX 142280280 142280562 -20319368 + AluSx SINE Alu 6 287 -25 1851 152 55 12 chrX 142280816 142281145 -20318785 - MER2 DNA MER2_type 0 344 2 233 219 0 0 chrX 142281232 142281273 -20318657 - L3b LINE CR1 -1 1582 1542 235 380 70 19 chrX 142281295 142281453 -20318477 + MIR SINE MIR 40 205 -57 1856 170 118 39 chrX 142281462 142281661 -20318269 - LTR54B LTR ERV1 -2 496 314 1867 166 0 3 chrX 142281661 142281969 -20317961 - AluJo SINE Alu -4 308 2 1856 170 118 39 chrX 142281969 142282227 -20317703 - LTR54B LTR ERV1 -184 314 3 337 275 0 22 chrX 142282262 142282353 -20317577 - MIR SINE MIR -67 195 107 1309 116 0 0 chrX 142282383 142282564 -20317366 + AluSg/x SINE Alu 130 310 0 2041 122 49 0 chrX 142282589 142282876 -20317054 + AluSx SINE Alu 1 301 -11 309 225 14 0 chrX 142282939 142283010 -20316920 + MIR3 SINE MIR 85 156 -52 24 32 0 0 chrX 142283435 142283466 -20316464 + AT_rich Low_complexity Low_complexity 1 31 0 554 181 0 9 chrX 142283466 142283582 -20316348 + GA-rich Low_complexity Low_complexity 2 116 0 300 245 11 75 chrX 142283677 142283771 -20316159 - L2 LINE L2 -1 3312 3225 231 125 0 0 chrX 142283826 142283866 -20316064 - L1ME LINE L1 -237 5884 5845 1945 113 69 0 chrX 142284069 142284344 -20315586 + AluSq SINE Alu 1 294 -19 482 211 7 68 chrX 142284350 142284497 -20315433 - MIR SINE MIR -14 248 111 665 167 94 14 chrX 142285615 142285753 -20314177 + MIR SINE MIR 12 160 -102 827 102 0 2 chrX 142286471 142286717 -20313213 + AluSx SINE Alu 1 295 -15 1790 109 105 0 chrX 142286917 142287213 -20312717 + AluJb SINE Alu 7 330 0 280 286 50 25 chrX 142287553 142287714 -20312216 - L2 LINE L2 -299 2973 2809 1530 135 26 34 chrX 142287725 142287991 -20311939 + MER21A LTR ERV1 1 264 -667 2823 160 87 15 chrX 142287995 142288515 -20311415 + MER21A LTR ERV1 375 931 0 270 279 0 0 chrX 142288526 142288594 -20311336 - L2 LINE L2 0 3313 3246 2515 107 11 21 chrX 142288595 142288815 -20311115 - MLT1B LTR MaLR 0 390 174 2182 108 52 0 chrX 142288815 142289101 -20310829 - AluSx SINE Alu -11 301 1 2515 107 11 21 chrX 142289101 142289254 -20310676 - MLT1B LTR MaLR -216 174 21 252 229 53 106 chrX 142289291 142289421 -20310509 - L2 LINE L2 -61 3252 3133 803 123 46 23 chrX 142289421 142289551 -20310379 + FLAM_C SINE Alu 1 133 0 252 229 53 106 chrX 142289551 142289608 -20310322 - L2 LINE L2 -180 3133 3075 1035 306 76 16 chrX 142289673 142290173 -20309757 - L2 LINE L2 -527 2787 2258 2946 126 96 2 chrX 142290247 142290715 -20309215 + MER41E LTR ERV1 1 512 0 272 301 30 38 chrX 142290794 142290927 -20309003 + L2 LINE L2 1240 1371 -1943 207 156 0 0 chrX 142290934 142290966 -20308964 + (CCA)n Simple_repeat Simple_repeat 1 32 0 713 310 64 12 chrX 142290968 142291050 -20308880 + L2 LINE L2 1554 1630 -1684 498 66 0 121 chrX 142291050 142291089 -20308841 + MADE1 DNA Mariner 1 24 -56 2295 91 3 3 chrX 142291089 142291386 -20308544 - AluSg SINE Alu -13 297 1 498 66 0 121 chrX 142291386 142291437 -20308493 + MADE1 DNA Mariner 24 80 0 713 310 64 12 chrX 142291437 142291761 -20308169 + L2 LINE L2 1630 1981 -1333 2492 188 57 15 chrX 142291779 142292305 -20307625 - Charlie1a DNA MER1_type -860 595 48 996 305 77 34 chrX 142292535 142292571 -20307359 - L2 LINE L2 -2432 882 849 1353 106 111 0 chrX 142292571 142292778 -20307152 + MER30 DNA MER1_type 1 230 0 996 305 77 34 chrX 142292778 142292878 -20307052 - L2 LINE L2 -2465 849 755 2396 91 0 0 chrX 142292878 142293175 -20306755 + AluY SINE Alu 1 297 -14 996 305 77 34 chrX 142293175 142293594 -20306336 - L2 LINE L2 -2559 755 302 3102 132 323 2 chrX 142293726 142294926 -20305004 - pTR5 LTR ERV1 0 2606 1524 2266 189 13 29 chrX 142295063 142295513 -20304417 + LOR1b LTR ERV1 1 443 -18 2145 91 0 4 chrX 142295513 142295788 -20304142 - AluY SINE Alu -37 274 1 1508 117 12 150 chrX 142295983 142296114 -20303816 + AluJo SINE Alu 10 69 -243 2216 114 13 0 chrX 142296114 142296420 -20303510 + AluSg SINE Alu 1 310 0 1508 117 12 150 chrX 142296420 142296621 -20303309 + AluJo SINE Alu 69 296 -16 439 203 70 42 chrX 142296920 142297063 -20302867 - MIR SINE MIR -108 154 8 2166 101 3 7 chrX 142297329 142297637 -20302293 + AluSq SINE Alu 1 307 0 2409 76 0 0 chrX 142298335 142298623 -20301307 - AluSg SINE Alu -14 296 9 807 111 16 8 chrX 142298644 142298770 -20301160 - L1MC1 LINE L1 0 6333 6207 1385 134 5 5 chrX 142298972 142299181 -20300749 - AluSg/x SINE Alu -17 293 85 474 152 0 98 chrX 142300452 142300564 -20299366 - AluSg/x SINE Alu -8 301 201 2324 84 0 0 chrX 142300820 142301107 -20298823 - AluSx SINE Alu -25 287 1 193 344 84 8 chrX 142301559 142301690 -20298240 - L2 LINE L2 -212 3060 2920 769 122 0 0 chrX 142302002 142302109 -20297821 + U6 snRNA snRNA 1 107 0 2782 145 33 35 chrX 142302135 142302506 -20297424 + L1 LINE L1 4687 5058 -1088 2394 94 0 16 chrX 142302506 142302813 -20297117 + AluSx SINE Alu 1 302 -10 2782 145 33 35 chrX 142302813 142302985 -20296945 + L1 LINE L1 5058 5229 -917 1050 130 11 5 chrX 142302979 142303164 -20296766 - L1MA4 LINE L1 -257 6043 5858 * 1533 150 17 0 chrX 142303164 142303397 -20296533 + AluSx SINE Alu 1 237 -75 969 202 35 0 chrX 142303398 142303601 -20296329 - L1 LINE L1 -916 5230 5021 * 1191 142 0 71 chrX 142303599 142303728 -20296202 + L1MA4 LINE L1 6054 6160 -140 2297 65 20 7 chrX 142303728 142304022 -20295908 - AluY SINE Alu -13 298 1 1191 142 0 71 chrX 142304022 142304131 -20295799 + L1MA4 LINE L1 6160 6275 -25 1994 139 10 13 chrX 142304136 142304445 -20295485 - AluSx SINE Alu -4 308 1 643 121 0 0 chrX 142304445 142304536 -20295394 - AluSq/x SINE Alu -178 135 45 366 321 32 62 chrX 142304577 142304885 -20295045 - L2 LINE L2 -566 2748 2450 226 266 16 0 chrX 142305033 142305097 -20294833 + C-rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chrX 142305455 142305479 -20294451 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 142306699 142306721 -20293209 + AT_rich Low_complexity Low_complexity 1 22 0 2045 125 3 3 chrX 142307039 142307327 -20292603 - AluSx SINE Alu -24 288 1 922 86 39 8 chrX 142307334 142307462 -20292468 - AluSq/x SINE Alu -181 132 1 2422 64 14 7 chrX 142307466 142307761 -20292169 - AluY SINE Alu -14 297 1 1000 188 0 6 chrX 142307775 142307940 -20291990 + AluJb SINE Alu 133 296 -16 978 94 31 0 chrX 142307944 142308071 -20291859 + AluSq/x SINE Alu 5 135 -177 2083 112 10 0 chrX 142308071 142308366 -20291564 + AluSp SINE Alu 1 298 -15 737 168 0 24 chrX 142309266 142309391 -20290539 + FLAM_C SINE Alu 12 133 -10 809 150 15 0 chrX 142309419 142309552 -20290378 - MER5A DNA MER1_type 0 189 55 360 284 94 16 chrX 142309868 142309995 -20289935 + L2 LINE L2 3132 3268 -4 2359 91 0 3 chrX 142310001 142310297 -20289633 - AluSx SINE Alu -17 295 1 2470 36 17 13 chrX 142311132 142311433 -20288497 - AluY SINE Alu -9 302 1 186 133 0 0 chrX 142311952 142311982 -20287948 + (GGGGA)n Simple_repeat Simple_repeat 3 32 0 1745 147 0 15 chrX 142312346 142312612 -20287318 + AluJo SINE Alu 1 262 -50 1751 97 0 9 chrX 142312612 142312836 -20287094 - AluSx SINE Alu -88 224 1 2282 113 3 0 chrX 142313171 142313472 -20286458 - AluSx SINE Alu -10 302 1 333 277 71 9 chrX 142313514 142313626 -20286304 + MIR SINE MIR 35 153 -55 2279 84 7 26 chrX 142313935 142314244 -20285686 + AluSg SINE Alu 1 303 -7 23 54 0 0 chrX 142314840 142314877 -20285053 + AT_rich Low_complexity Low_complexity 1 37 0 922 232 77 146 chrX 142315012 142315031 -20284899 - L1MC4a LINE L1 -1856 5952 5933 2336 65 13 32 chrX 142315031 142315341 -20284589 - AluY SINE Alu -7 304 1 922 232 77 146 chrX 142315341 142315541 -20284389 - L1MC4a LINE L1 -1875 5933 5721 2319 97 0 0 chrX 142315541 142315839 -20284091 - AluSx SINE Alu -14 298 1 922 232 77 146 chrX 142315839 142316270 -20283660 - L1MC4a LINE L1 -2087 5721 5346 2214 117 7 0 chrX 142316353 142316660 -20283270 - AluSg SINE Alu -1 309 1 2397 106 0 0 chrX 142316677 142316989 -20282941 - AluSx SINE Alu 0 312 1 30 27 0 0 chrX 142317106 142317143 -20282787 + AT_rich Low_complexity Low_complexity 1 37 0 1859 187 0 3 chrX 142317603 142317908 -20282022 - AluJb SINE Alu -8 304 1 2078 65 65 11 chrX 142317983 142318296 -20281634 - AluSq SINE Alu 0 313 1 21 0 0 0 chrX 142318335 142318356 -20281574 + AT_rich Low_complexity Low_complexity 1 21 0 226 319 80 98 chrX 142318646 142318758 -20281172 + L2 LINE L2 2917 3029 -243 2287 95 3 3 chrX 142318758 142319052 -20280878 - AluSx SINE Alu -18 294 1 226 319 80 98 chrX 142319052 142319277 -20280653 + L2 LINE L2 3029 3248 -24 762 136 0 0 chrX 142319564 142319682 -20280248 + FLAM_A SINE Alu 13 130 -12 1808 127 6 92 chrX 142320456 142320772 -20279158 - AluSx SINE Alu -23 289 1 2339 84 0 32 chrX 142322240 142322549 -20277381 + AluSq SINE Alu 1 299 -14 1459 136 133 14 chrX 142322843 142323122 -20276808 - AluJo SINE Alu 0 312 1 637 51 0 0 chrX 142324581 142324660 -20275270 + MADE1 DNA Mariner 1 79 -1 25 0 0 0 chrX 142324999 142325024 -20274906 + AT_rich Low_complexity Low_complexity 1 25 0 1660 134 119 0 chrX 142325076 142325344 -20274586 - AluJo SINE Alu -12 300 1 316 261 68 0 chrX 142325505 142325593 -20274337 + L2 LINE L2 3200 3293 -20 180 0 0 0 chrX 142325658 142325678 -20274252 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 517 268 81 45 chrX 142326535 142326916 -20273014 + L1ME4a LINE L1 5708 6102 -19 2242 112 10 7 chrX 142327499 142327804 -20272126 - AluSg SINE Alu -4 306 1 1476 158 38 10 chrX 142327825 142328117 -20271813 - L1MB1 LINE L1 -1 6167 5868 353 179 0 15 chrX 142328308 142328375 -20271555 + Charlie7 DNA MER1_type 36 101 -2511 349 281 82 18 chrX 142328361 142328532 -20271398 + Charlie7 DNA MER1_type 2429 2610 -2 * 2291 104 3 0 chrX 142329585 142329892 -20270038 - AluSp SINE Alu -5 308 1 2246 102 0 13 chrX 142330325 142330630 -20269300 - AluSx SINE Alu -11 301 1 32 0 0 0 chrX 142331384 142331416 -20268514 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 142332193 142332221 -20267709 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chrX 142333087 142333113 -20266817 + (TG)n Simple_repeat Simple_repeat 2 27 0 488 92 0 0 chrX 142333113 142333178 -20266752 - AluY SINE Alu -18 283 219 792 119 0 0 chrX 142333178 142333279 -20266651 - AluSg/x SINE Alu -125 187 87 1880 124 68 24 chrX 142333333 142333671 -20266259 - MER46B DNA MER2_type -8 228 1 1897 148 13 20 chrX 142335342 142335713 -20264217 - AluJb SINE Alu 0 369 1 2215 110 6 12 chrX 142335852 142336171 -20263759 - L1MC1 LINE L1 0 6333 6017 328 212 10 61 chrX 142336206 142336305 -20263625 - L1MC5 LINE L1 -48 7913 7820 2339 88 0 0 chrX 142336327 142336622 -20263308 - AluSx SINE Alu -7 305 11 381 263 164 13 chrX 142336817 142336969 -20262961 + MER5A DNA MER1_type 15 189 0 347 300 164 14 chrX 142337011 142337151 -20262779 - MIR SINE MIR -81 181 21 2521 75 7 0 chrX 142337188 142337496 -20262434 - AluSq SINE Alu -3 310 1 2315 104 0 0 chrX 142337526 142337835 -20262095 + AluSq SINE Alu 1 309 -4 416 249 109 55 chrX 142339219 142339384 -20260546 - MIR3 SINE MIR -19 189 16 1989 89 53 7 chrX 142339866 142340148 -20259782 - AluSq SINE Alu -6 307 13 2264 155 136 7 chrX 142340424 142340844 -20259086 - MER101 LTR ERV1 0 474 1 288 286 76 19 chrX 142341358 142341463 -20258467 + L3 LINE CR1 1460 1570 -7 1042 223 77 45 chrX 142341504 142341840 -20258090 + L1MD2 LINE L1 5932 6278 -81 2095 133 3 0 chrX 142341886 142342179 -20257751 - AluSq SINE Alu -17 296 3 571 223 62 8 chrX 142343049 142343179 -20256751 + MIR SINE MIR 46 182 -80 197 206 0 0 chrX 142343178 142343212 -20256718 + L2 LINE L2 3223 3256 -16 * 2416 82 0 7 chrX 142343476 142343781 -20256149 - AluSx SINE Alu -9 303 1 226 250 0 18 chrX 142344165 142344221 -20255709 - L2 LINE L2 0 3272 3218 412 279 34 27 chrX 142344264 142344411 -20255519 + MIR SINE MIR 78 225 -37 1877 184 57 82 chrX 142344665 142345142 -20254788 + MLT1C LTR MaLR 3 467 0 1892 122 61 0 chrX 142345310 142345589 -20254341 - AluSx SINE Alu -16 296 1 1156 119 243 0 chrX 142345851 142346036 -20253894 - MER30 DNA MER1_type 0 230 1 2645 55 63 33 chrX 142346036 142346400 -20253530 + THE1C LTR MaLR 1 375 0 3386 196 78 35 chrX 142346561 142347411 -20252519 + L1MC4 LINE L1 7157 8042 0 325 315 78 73 chrX 142347411 142347643 -20252287 - L2 LINE L2 -10 3262 3030 400 164 27 0 chrX 142348390 142348463 -20251467 + MER116 DNA Mariner 1 75 -5 315 253 0 0 chrX 142348468 142348551 -20251379 - L1MC5 LINE L1 -86 7875 7793 965 190 6 6 chrX 142348850 142349013 -20250917 - FRAM SINE Alu -3 163 1 1589 219 31 20 chrX 142349063 142349419 -20250511 - L1MC4a LINE L1 -1888 5920 5561 2398 69 3 0 chrX 142350336 142350625 -20249305 - AluSp SINE Alu -23 290 1 320 210 150 10 chrX 142350703 142350803 -20249127 - L1ME4a LINE L1 -40 6081 5968 414 57 0 0 chrX 142350803 142350856 -20249074 + (TA)n Simple_repeat Simple_repeat 2 54 0 507 246 42 30 chrX 142350895 142351062 -20248868 + MIR SINE MIR 92 260 -2 620 221 29 0 chrX 142351148 142351284 -20248646 - L1ME4a LINE L1 -2103 5705 5566 235 314 132 13 chrX 142351418 142351577 -20248353 - L2 LINE L2 -350 2964 2787 542 299 87 12 chrX 142351582 142351823 -20248107 - L2 LINE L2 0 3313 3055 326 252 48 0 chrX 142351919 142352022 -20247908 + MER113 DNA MER1_type? 84 191 -330 1361 152 13 42 chrX 142352048 142352285 -20247645 + AluJo SINE Alu 42 271 -41 2219 119 0 10 chrX 142352285 142352595 -20247335 + AluSx SINE Alu 1 307 -5 389 248 113 14 chrX 142352696 142352837 -20247093 - MIR SINE MIR -17 245 91 225 242 45 15 chrX 142352809 142352875 -20247055 + MIR SINE MIR 88 155 -107 * 1947 141 24 3 chrX 142353535 142353832 -20246098 + AluJb SINE Alu 1 303 -9 2530 83 0 0 chrX 142355001 142355313 -20244617 + AluSx SINE Alu 1 312 0 2359 234 23 16 chrX 142355483 142356085 -20243845 + L1ME1 LINE L1 5526 6183 -1 1736 115 101 14 chrX 142356094 142356381 -20243549 + AluSq SINE Alu 1 312 -1 21 82 0 0 chrX 142357125 142357174 -20242756 + AT_rich Low_complexity Low_complexity 1 49 0 870 289 93 19 chrX 142357317 142357639 -20242291 + L3 LINE CR1 1066 1411 -166 2407 89 3 0 chrX 142357975 142358277 -20241653 + AluSq SINE Alu 7 309 -4 236 250 40 40 chrX 142358322 142358446 -20241484 - L1ME LINE L1 -233 5888 5765 513 19 0 252 chrX 142358673 142358726 -20241204 + MADE1 DNA Mariner 1 15 -65 1495 67 0 10 chrX 142358726 142358919 -20241011 - AluY SINE Alu -10 301 111 513 19 0 252 chrX 142358919 142358972 -20240958 + MADE1 DNA Mariner 15 80 0 1776 209 64 26 chrX 142359039 142359129 -20240801 - L1MB4 LINE L1 -24 6156 6071 2305 98 0 0 chrX 142359129 142359425 -20240505 - AluSg SINE Alu -14 296 1 1776 209 64 26 chrX 142359425 142359994 -20239936 - L1MB4 LINE L1 -109 6071 5463 1769 163 24 3 chrX 142360033 142360321 -20239609 + AluSx SINE Alu 3 296 -16 681 234 42 12 chrX 142361177 142361344 -20238586 - MIR3 SINE MIR -3 205 34 471 324 65 0 chrX 142362141 142362326 -20237604 + L3 LINE CR1 1375 1571 -6 185 375 21 10 chrX 142362444 142362540 -20237390 + L2 LINE L2 3168 3264 -8 2279 169 72 25 chrX 142362876 142363320 -20236610 + MLT1C LTR MaLR 3 467 0 2276 98 0 3 chrX 142363394 142363691 -20236239 - AluSx SINE Alu -16 296 1 2381 77 3 3 chrX 142363933 142364232 -20235698 + AluSx SINE Alu 1 299 -13 26 62 0 15 chrX 142364960 142364975 -20234955 + AT_rich Low_complexity Low_complexity 1 15 -49 2454 75 0 0 chrX 142364975 142365268 -20234662 - AluY SINE Alu -18 293 1 26 62 0 15 chrX 142365268 142365317 -20234613 + AT_rich Low_complexity Low_complexity 15 64 0 2247 123 0 0 chrX 142366503 142366813 -20233117 + AluSg SINE Alu 1 310 0 2044 135 0 13 chrX 142367054 142367365 -20232565 + AluJb SINE Alu 2 308 -4 244 216 0 14 chrX 142367669 142367743 -20232187 - L1ME4a LINE L1 0 6121 6049 225 0 0 0 chrX 142367921 142367946 -20231984 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2082 107 0 0 chrX 142367957 142368228 -20231702 - AluSx SINE Alu -41 271 1 2317 107 0 0 chrX 142368869 142369167 -20230763 - AluSx SINE Alu -14 298 1 2370 86 0 7 chrX 142370259 142370560 -20229370 + AluSx SINE Alu 14 312 0 30 71 0 31 chrX 142371081 142371179 -20228751 + AT_rich Low_complexity Low_complexity 1 95 0 2190 127 0 3 chrX 142371397 142371711 -20228219 - AluSq SINE Alu 0 313 1 2406 81 3 0 chrX 142372026 142372322 -20227608 - AluSp SINE Alu -16 297 1 786 224 5 49 chrX 142372592 142372815 -20227115 + L1ME1 LINE L1 5954 6166 0 2423 107 49 22 chrX 142374089 142374454 -20225476 + THE1C LTR MaLR 1 375 0 906 149 0 15 chrX 142374744 142374878 -20225052 + FLAM_C SINE Alu 1 132 -1 441 275 12 25 chrX 142375755 142375915 -20224015 + HAL1b LINE L1 1184 1341 -7 3369 184 27 59 chrX 142375953 142376236 -20223694 + L1M3 LINE L1 4506 4797 -1383 1906 143 0 7 chrX 142376236 142376515 -20223415 + AluSx SINE Alu 31 307 -5 3369 184 27 59 chrX 142376515 142376564 -20223366 + L1M3 LINE L1 4797 4846 -1334 2654 46 0 0 chrX 142376564 142376871 -20223059 + AluY SINE Alu 1 307 -4 3369 184 27 59 chrX 142376871 142377217 -20222713 + L1M3 LINE L1 4846 5202 -978 2159 103 7 0 chrX 142377217 142377509 -20222421 - AluSg SINE Alu -16 294 1 2424 82 0 0 chrX 142377519 142377812 -20222118 - AluSq SINE Alu -18 295 3 2439 70 0 0 chrX 142377814 142378101 -20221829 - AluY SINE Alu -22 289 3 3369 184 27 59 chrX 142378101 142378413 -20221517 + L1M3 LINE L1 5212 5467 -713 900 179 0 0 chrX 142378413 142378564 -20221366 - AluSg/x SINE Alu 0 310 160 2263 119 3 3 chrX 142378570 142378882 -20221048 - AluSx SINE Alu 0 312 1 594 207 62 42 chrX 142378890 142379083 -20220847 + Charlie7 DNA MER1_type 2410 2606 -6 1510 183 14 25 chrX 142379167 142379480 -20220450 + AluJo SINE Alu 1 310 0 248 404 39 19 chrX 142379480 142379688 -20220242 - L2 LINE L2 -248 3024 2813 513 291 143 9 chrX 142379737 142379967 -20219963 + MIR SINE MIR 2 262 0 9904 24 2 201 chrX 142380056 142381784 -20218146 - SVA Other Other -2 1384 1 21 0 0 0 chrX 142381798 142381819 -20218111 + AT_rich Low_complexity Low_complexity 1 21 0 2277 71 35 0 chrX 142381819 142382102 -20217828 + AluY SINE Alu 1 293 -18 23 54 0 0 chrX 142382760 142382797 -20217133 + AT_rich Low_complexity Low_complexity 1 37 0 184 163 163 0 chrX 142382987 142383030 -20216900 + L2 LINE L2 3222 3271 -1 2199 107 0 13 chrX 142383059 142383358 -20216572 - AluSx SINE Alu -17 295 1 823 187 0 0 chrX 142383376 142383499 -20216431 - FLAM_C SINE Alu -9 124 2 2199 157 152 7 chrX 142383635 142384043 -20215887 + MLT1C LTR MaLR 1 467 0 1745 175 0 10 chrX 142384149 142384284 -20215646 + AluJo SINE Alu 1 136 -176 2347 98 0 19 chrX 142384284 142384601 -20215329 + AluSx SINE Alu 1 311 -1 1745 175 0 10 chrX 142384601 142384773 -20215157 + AluJo SINE Alu 136 305 -7 1903 98 0 85 chrX 142385037 142385372 -20214558 + AluSx SINE Alu 1 312 0 483 228 151 77 chrX 142385374 142385523 -20214407 + L1MC5 LINE L1 7348 7485 -476 6966 75 10 0 chrX 142385523 142386879 -20213051 + L1PA8A LINE L1 4765 6129 -2 483 228 151 77 chrX 142386879 142387260 -20212670 + L1MC5 LINE L1 7485 7917 -44 738 193 7 27 chrX 142387292 142387442 -20212488 + MER8 DNA MER2_type 1 147 -92 4859 80 7 41 chrX 142387464 142387719 -20212211 + L1MA2 LINE L1 5577 5839 -465 2312 94 7 3 chrX 142387719 142388027 -20211903 + AluSx SINE Alu 1 309 -3 4859 80 7 41 chrX 142388027 142388129 -20211801 + L1MA2 LINE L1 5839 5943 -361 2394 77 10 0 chrX 142388129 142388426 -20211504 - AluSx SINE Alu -12 300 1 4859 80 7 41 chrX 142388426 142388781 -20211149 + L1MA2 LINE L1 5943 6266 -38 22 35 0 0 chrX 142388789 142388818 -20211112 + AT_rich Low_complexity Low_complexity 1 29 0 249 220 0 0 chrX 142388842 142388901 -20211029 - MIR SINE MIR -67 195 137 2311 110 0 7 chrX 142389054 142389363 -20210567 + AluSx SINE Alu 2 308 -4 23 54 0 0 chrX 142389486 142389523 -20210407 + AT_rich Low_complexity Low_complexity 1 37 0 2495 77 3 0 chrX 142389789 142390101 -20209829 + AluSq SINE Alu 1 313 0 312 329 185 10 chrX 142390248 142390443 -20209487 + MIR SINE MIR 13 237 -25 264 300 0 0 chrX 142390617 142390707 -20209223 + (CA)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chrX 142390934 142390956 -20208974 + AT_rich Low_complexity Low_complexity 1 22 0 1412 101 0 0 chrX 142392016 142392195 -20207735 + AluSx SINE Alu 1 179 -133 536 194 120 9 chrX 142392222 142392330 -20207600 + AluJb SINE Alu 2 121 -191 258 32 0 0 chrX 142392330 142392361 -20207569 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 342 0 0 0 chrX 142392360 142392398 -20207532 + (GA)n Simple_repeat Simple_repeat 2 39 0 209 372 171 25 chrX 142392398 142392766 -20207164 - L2 LINE L2 -47 3225 2804 2065 111 0 21 chrX 142393142 142393462 -20206468 + AluSx SINE Alu 1 314 0 1841 132 19 42 chrX 142394435 142394746 -20205184 + AluSx SINE Alu 3 306 -6 328 232 0 0 chrX 142395011 142395080 -20204850 + MIR SINE MIR 194 262 0 1957 162 31 12 chrX 142395242 142395569 -20204361 - L1MC1 LINE L1 -1 6332 6000 2290 104 0 22 chrX 142395574 142395891 -20204039 - AluSx SINE Alu -2 310 1 234 211 144 0 chrX 142395965 142396055 -20203875 - L1MC1 LINE L1 -244 5877 5775 583 253 58 35 chrX 142396063 142396237 -20203693 - MIR SINE MIR -40 222 45 967 239 85 24 chrX 142396253 142396546 -20203384 - L1MC1 LINE L1 -351 5770 5460 272 250 0 54 chrX 142396761 142396853 -20203077 + L1MC4 LINE L1 6614 6700 -1342 198 236 0 0 chrX 142396855 142396910 -20203020 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 1851 69 31 46 chrX 142397164 142397251 -20202679 - L1PA14 LINE L1 -2 6159 6072 2379 99 0 7 chrX 142397251 142397553 -20202377 - AluSx SINE Alu -12 300 1 1851 69 31 46 chrX 142397553 142397725 -20202205 - L1PA14 LINE L1 -89 6072 5904 207 0 0 0 chrX 142399141 142399164 -20200766 + (T)n Simple_repeat Simple_repeat 1 23 0 304 213 67 13 chrX 142399305 142399380 -20200550 + L1MC4 LINE L1 6614 6692 -1350 2127 117 0 3 chrX 142399380 142399670 -20200260 - AluSx SINE Alu -23 289 1 1495 104 4 101 chrX 142399709 142399977 -20199953 - L1MB2 LINE L1 -2 6169 5928 738 167 18 162 chrX 142400330 142400495 -20199435 + MLT1L LTR MaLR 420 547 -68 2313 110 0 0 chrX 142400495 142400804 -20199126 - AluSx SINE Alu -1 311 3 738 167 18 162 chrX 142400804 142400860 -20199070 + MLT1L LTR MaLR 547 609 -6 2386 86 23 0 chrX 142401175 142401477 -20198453 + AluSg SINE Alu 2 310 0 26 30 0 0 chrX 142401509 142401542 -20198388 + AT_rich Low_complexity Low_complexity 1 33 0 499 218 60 15 chrX 142401587 142401720 -20198210 - MIR SINE MIR -3 259 121 1996 300 113 38 chrX 142401763 142402907 -20197023 + L2 LINE L2 1813 3037 -235 190 150 100 0 chrX 142403024 142403064 -20196866 + L2 LINE L2 3270 3313 0 2160 100 17 0 chrX 142403203 142403516 -20196414 - AluSx SINE Alu 0 312 1 1037 195 30 64 chrX 142403631 142403787 -20196143 + L1M4 LINE L1 3412 3572 -2574 2381 87 3 3 chrX 142403787 142404097 -20195833 + AluSq SINE Alu 1 310 -3 1037 195 30 64 chrX 142404097 142404428 -20195502 + L1M4 LINE L1 3572 3947 -2199 2321 112 3 6 chrX 142404428 142404741 -20195189 + AluSx SINE Alu 1 312 0 1037 195 30 64 chrX 142404741 142404843 -20195087 + L1M4 LINE L1 3947 4051 -2095 716 140 0 0 chrX 142404868 142404975 -20194955 + L1MB5 LINE L1 6060 6166 -8 716 147 73 37 chrX 142405366 142405502 -20194428 + MER5A DNA MER1_type 49 189 0 2414 75 0 19 chrX 142405685 142405993 -20193937 - AluSx SINE Alu -10 302 1 706 187 68 87 chrX 142406346 142406565 -20193365 + Charlie8 DNA MER1_type 30 244 -2173 630 168 48 32 chrX 142406638 142406763 -20193167 - FLAM_A SINE Alu -6 127 1 472 184 29 10 chrX 142406772 142406875 -20193055 - L1MD2 LINE L1 -2 6357 6253 1208 203 0 0 chrX 142408448 142408660 -20191270 - MER58A DNA MER1_type -4 220 9 1034 104 8 0 chrX 142408677 142408811 -20191119 + AluSg SINE Alu 1 135 -175 1495 80 60 0 chrX 142408811 142409012 -20190918 + AluSc SINE Alu 87 299 -10 462 253 171 13 chrX 142410618 142410776 -20189154 + MIR3 SINE MIR 23 205 -3 2443 76 0 0 chrX 142410945 142411247 -20188683 + AluY SINE Alu 1 302 -9 909 171 29 23 chrX 142411300 142411529 -20188401 - MER106B DNA MER1_type -1 1058 5 2273 92 0 22 chrX 142411593 142411730 -20188200 + AluSx SINE Alu 1 140 -172 2507 54 0 0 chrX 142411730 142412054 -20187876 + AluY SINE Alu 1 311 0 2273 92 0 22 chrX 142412054 142412232 -20187698 + AluSx SINE Alu 140 309 -3 2554 40 3 7 chrX 142413772 142414073 -20185857 - AluSq SINE Alu -10 303 4 495 254 60 27 chrX 142414157 142414342 -20185588 + MARNA DNA Mariner 15 205 -381 2465 64 3 0 chrX 142414499 142414794 -20185136 - AluSp SINE Alu -17 296 1 807 260 56 0 chrX 142415051 142415247 -20184683 - MIR SINE MIR 0 262 56 1995 98 175 15 chrX 142417036 142417362 -20182568 + MER83B LTR ERV1 1 378 0 11551 143 50 27 chrX 142417382 142418025 -20181905 + MER83B-int LTR ERV1 55 682 -4198 2396 86 0 3 chrX 142418025 142418326 -20181604 + AluSx SINE Alu 1 300 -12 11551 143 50 27 chrX 142418326 142419608 -20180322 + MER83B-int LTR ERV1 682 2029 -2851 2422 75 0 0 chrX 142419608 142419900 -20180030 - AluSc SINE Alu -17 292 1 11551 143 50 27 chrX 142419900 142419961 -20179969 + MER83B-int LTR ERV1 2029 2087 -2793 866 114 30 8 chrX 142419963 142420095 -20179835 - AluSg/x SINE Alu -43 269 135 2239 89 0 33 chrX 142420095 142420399 -20179531 - AluSg SINE Alu -16 294 1 3370 143 48 69 chrX 142420410 142420440 -20179490 + MER83B-int LTR ERV1 3116 3145 -1735 2149 87 35 17 chrX 142420440 142420729 -20179201 - AluSq SINE Alu -19 294 1 3370 143 48 69 chrX 142420729 142421472 -20178458 + MER83B-int LTR ERV1 3145 3902 -978 189 0 0 0 chrX 142421472 142421493 -20178437 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 3370 143 48 69 chrX 142421493 142421851 -20178079 + MER83B-int LTR ERV1 3902 4858 -22 271 311 0 0 chrX 142421851 142421872 -20178058 + MIR SINE MIR 168 188 -74 2023 103 148 3 chrX 142421872 142422202 -20177728 + MER83B LTR ERV1 1 378 0 271 311 0 0 chrX 142422202 142422270 -20177660 + MIR SINE MIR 187 257 -5 2321 74 3 26 chrX 142422289 142422599 -20177331 + AluSx SINE Alu 1 303 -9 247 239 13 32 chrX 142423663 142423818 -20176112 + C-rich Low_complexity Low_complexity 2 153 0 394 320 6 39 chrX 142423818 142424044 -20175886 + CT-rich Low_complexity Low_complexity 1 218 0 237 55 0 91 chrX 142424044 142424099 -20175831 + (CCCCCG)n Simple_repeat Simple_repeat 2 51 0 227 146 0 42 chrX 142424180 142424228 -20175702 - L1PA15-16 LINE L1 -6175 674 629 448 288 68 0 chrX 142425505 142425637 -20174293 + MIR3 SINE MIR 36 176 -32 434 262 7 51 chrX 142427617 142427779 -20172151 - MIR SINE MIR -63 145 43 237 293 0 0 chrX 142428024 142428082 -20171848 + MIR SINE MIR 94 151 -57 181 346 127 13 chrX 142428352 142428580 -20171350 - L2 LINE L2 -736 2578 2325 204 336 67 35 chrX 142428936 142429281 -20170649 + L2 LINE L2 1742 2097 -1217 1694 126 24 105 chrX 142429538 142429872 -20170058 + AluYb8 SINE Alu 1 307 -11 403 147 86 0 chrX 142431856 142432019 -20167911 + (TA)n Simple_repeat Simple_repeat 2 178 0 316 181 78 9 chrX 142432048 142432385 -20167545 + (TA)n Simple_repeat Simple_repeat 1 360 0 1927 128 6 58 chrX 142432475 142432803 -20167127 + AluJo SINE Alu 1 311 -1 2358 92 3 3 chrX 142433010 142433313 -20166617 + AluSq SINE Alu 1 303 -10 2221 110 17 0 chrX 142433433 142433734 -20166196 - AluSc SINE Alu -3 306 1 2166 123 0 7 chrX 142433874 142434176 -20165754 - AluSq SINE Alu -13 300 1 1306 165 4 40 chrX 142434526 142434668 -20165262 + L1MA9 LINE L1 6069 6200 -112 2257 112 3 0 chrX 142434668 142434963 -20164967 + AluSq SINE Alu 1 296 -17 1306 165 4 40 chrX 142434963 142435068 -20164862 + L1MA9 LINE L1 6200 6307 -5 1589 139 52 8 chrX 142435648 142435915 -20164015 + AluJb SINE Alu 18 296 -16 1986 114 34 20 chrX 142435925 142436222 -20163708 - AluSq SINE Alu -12 301 1 2017 132 0 32 chrX 142436311 142436621 -20163309 - AluSx SINE Alu -12 300 1 2234 98 7 7 chrX 142436670 142436965 -20162965 - AluSx SINE Alu -17 295 1 38 51 0 0 chrX 142438666 142438725 -20161205 + AT_rich Low_complexity Low_complexity 1 59 0 2234 89 7 10 chrX 142439812 142440116 -20159814 - AluSx SINE Alu -9 303 1 2171 126 10 0 chrX 142440961 142441263 -20158667 - AluSx SINE Alu -7 305 1 2482 54 0 7 chrX 142441296 142441591 -20158339 + AluY SINE Alu 1 293 -18 2435 60 13 10 chrX 142441885 142442187 -20157743 - AluSp SINE Alu -10 303 1 2261 94 3 16 chrX 142442216 142442524 -20157406 + AluSx SINE Alu 1 304 -8 2238 81 3 27 chrX 142442566 142442863 -20157067 - AluSp SINE Alu -23 290 1 1961 150 7 0 chrX 142442863 142443163 -20156767 - AluJb SINE Alu -8 304 3 294 29 0 0 chrX 142443759 142443794 -20156136 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chrX 142444302 142444324 -20155606 + (CA)n Simple_repeat Simple_repeat 2 23 0 2445 48 41 3 chrX 142444868 142445161 -20154769 - AluY SINE Alu -7 304 1 30 0 0 0 chrX 142445696 142445726 -20154204 + AT_rich Low_complexity Low_complexity 1 30 0 227 304 0 0 chrX 142446649 142446705 -20153225 - MIR SINE MIR -129 79 24 675 297 26 115 chrX 142446799 142447146 -20152784 + L2 LINE L2 2957 3272 0 198 295 72 66 chrX 142447349 142447515 -20152415 - L2 LINE L2 -1404 1910 1744 27 0 0 0 chrX 142448741 142448768 -20151162 + AT_rich Low_complexity Low_complexity 1 27 0 2335 100 0 0 chrX 142451208 142451499 -20148431 + AluSc SINE Alu 3 293 -16 2299 107 0 7 chrX 142451549 142451858 -20148072 - AluSq SINE Alu -6 307 1 2105 116 45 0 chrX 142451913 142452205 -20147725 + AluSx SINE Alu 1 305 -7 842 148 51 182 chrX 142452206 142452560 -20147370 - L1MC5 LINE L1 -7 8035 7743 708 118 0 11 chrX 142452578 142452671 -20147259 + FLAM_C SINE Alu 29 120 -23 22 35 0 0 chrX 142452671 142452700 -20147230 + AT_rich Low_complexity Low_complexity 1 29 0 253 233 14 41 chrX 142452705 142452778 -20147152 - L1MC4 LINE L1 -296 7746 7676 383 336 0 0 chrX 142452800 142452916 -20147014 + L2 LINE L2 2393 2508 -806 294 139 139 0 chrX 142452956 142453028 -20146902 - MER67B LTR ERV1 0 661 580 3026 200 133 30 chrX 142453044 142453927 -20146003 - L1MC4 LINE L1 -623 7419 6427 208 149 128 0 chrX 142454089 142454136 -20145794 - L2 LINE L2 0 3313 3261 2334 92 3 0 chrX 142454161 142454454 -20145476 + AluSx SINE Alu 1 294 -18 201 338 68 0 chrX 142454567 142454641 -20145289 - L2 LINE L2 -228 3044 2966 2105 60 0 8 chrX 142454865 142455117 -20144813 + AluSc SINE Alu 49 298 -11 247 346 24 8 chrX 142455181 142455308 -20144622 - L2 LINE L2 -1358 1956 1828 442 226 12 83 chrX 142455308 142455476 -20144454 - MER113 DNA MER1_type? -324 197 42 257 299 0 0 chrX 142455595 142455662 -20144268 + L2 LINE L2 3238 3304 -9 420 216 52 88 chrX 142456202 142456396 -20143534 - MER113 DNA MER1_type? -316 205 19 2375 87 13 0 chrX 142456491 142456868 -20143062 - AluSq SINE Alu 0 381 1 2319 80 19 22 chrX 142457555 142457866 -20142064 - AluSg SINE Alu 0 310 1 267 197 118 0 chrX 142457990 142458066 -20141864 + L1ME3 LINE L1 6021 6105 -57 240 245 133 10 chrX 142458080 142458178 -20141752 + L1ME3A LINE L1 5998 6107 -63 234 278 35 17 chrX 142458280 142458395 -20141535 + L1ME3A LINE L1 5991 6107 -63 433 219 124 34 chrX 142458488 142458666 -20141264 - L1ME LINE L1 -326 5795 5602 273 243 54 0 chrX 142458904 142458979 -20140951 - L1P5 LINE L1 -558 5563 5490 1289 244 180 11 chrX 142459290 142459724 -20140206 - MLT1H LTR MaLR -33 516 10 871 214 232 29 chrX 142459729 142460009 -20139921 - L1MC4 LINE L1 -1898 5910 5574 1060 126 0 0 chrX 142460058 142460201 -20139729 + U4 snRNA snRNA 1 143 -2 21 0 0 0 chrX 142460241 142460262 -20139668 + AT_rich Low_complexity Low_complexity 1 21 0 5658 141 58 12 chrX 142460262 142460958 -20138972 - L1MA4A LINE L1 -25 6278 5616 2259 106 0 0 chrX 142460958 142461250 -20138680 + AluSg SINE Alu 1 292 -18 5658 141 58 12 chrX 142461250 142462457 -20137473 - L1MA4A LINE L1 -687 5616 4288 2529 222 65 64 chrX 142462454 142463401 -20136529 - L1MC4 LINE L1 0 8042 7095 * 660 222 30 129 chrX 142463475 142463544 -20136386 + L1MC/D LINE L1 4785 4859 -1318 2499 54 0 0 chrX 142463544 142463839 -20136091 - AluY SINE Alu -16 295 1 660 222 30 129 chrX 142463839 142464256 -20135674 + L1MC/D LINE L1 4859 5156 -1021 2238 84 37 0 chrX 142464256 142464554 -20135376 + AluY SINE Alu 1 309 -2 660 222 30 129 chrX 142464554 142464808 -20135122 + L1MC/D LINE L1 5156 5434 -743 370 283 67 108 chrX 142464851 142465074 -20134856 + L2 LINE L2 3058 3271 -1 204 40 0 0 chrX 142465627 142465652 -20134278 + (A)n Simple_repeat Simple_repeat 1 25 0 278 218 9 55 chrX 142466251 142466361 -20133569 - L1ME4a LINE L1 -11 6110 6006 192 40 0 0 chrX 142469001 142469026 -20130904 + (TTG)n Simple_repeat Simple_repeat 1 25 0 905 218 0 68 chrX 142469098 142469260 -20130670 + MER3 DNA MER1_type 1 146 -63 2046 118 10 25 chrX 142469260 142469430 -20130500 - AluSx SINE Alu -3 309 145 675 62 0 0 chrX 142469430 142469527 -20130403 + (TA)n Simple_repeat Simple_repeat 2 98 0 2046 118 10 25 chrX 142469527 142469670 -20130260 - AluSx SINE Alu -167 145 1 905 218 0 68 chrX 142469670 142469727 -20130203 + MER3 DNA MER1_type 146 205 -4 829 186 0 0 chrX 142470865 142470994 -20128936 - AluJb SINE Alu -45 267 139 2072 135 3 0 chrX 142471007 142471310 -20128620 - AluJb SINE Alu -8 304 1 2397 78 0 0 chrX 142471996 142472289 -20127641 - AluSq SINE Alu -12 301 9 196 320 123 8 chrX 142472330 142472452 -20127478 + MIR3 SINE MIR 22 157 -51 233 313 12 25 chrX 142472474 142472554 -20127376 + L3 LINE CR1 1498 1576 -1 560 247 101 86 chrX 142474920 142475187 -20124743 + MLT1L LTR MaLR 122 392 -223 254 176 68 54 chrX 142475595 142475669 -20124261 - MIR SINE MIR -105 103 28 643 286 16 5 chrX 142475736 142475928 -20124002 - MIR SINE MIR -6 256 63 2250 105 10 3 chrX 142476037 142476343 -20123587 - AluSx SINE Alu -4 308 1 281 295 18 96 chrX 142476819 142476985 -20122945 + L2 LINE L2 3116 3268 -4 243 123 15 46 chrX 142477371 142477436 -20122494 + CT-rich Low_complexity Low_complexity 2 64 0 2460 90 0 0 chrX 142477727 142478039 -20121891 - AluSx SINE Alu 0 312 1 733 177 0 0 chrX 142479197 142479321 -20120609 - L1ME3A LINE L1 -5 6165 6042 1406 213 130 43 chrX 142479326 142479786 -20120144 - MLT1D LTR MaLR 0 505 6 1627 227 37 22 chrX 142479811 142480009 -20119921 - L1ME3A LINE L1 -182 5988 5794 2413 83 3 0 chrX 142480009 142480310 -20119620 - AluSp SINE Alu -11 302 1 1627 227 37 22 chrX 142480310 142480520 -20119410 - L1ME3A LINE L1 -376 5794 5574 204 279 15 15 chrX 142482147 142482215 -20117715 + CT-rich Low_complexity Low_complexity 2 69 0 2422 88 0 10 chrX 142484044 142484350 -20115580 - AluSc SINE Alu -6 303 1 195 129 0 0 chrX 142484357 142484388 -20115542 + (T)n Simple_repeat Simple_repeat 1 31 0 321 118 0 0 chrX 142484666 142484717 -20115213 + (TC)n Simple_repeat Simple_repeat 2 52 0 186 133 0 0 chrX 142484886 142484916 -20115014 + (T)n Simple_repeat Simple_repeat 1 30 0 271 313 126 22 chrX 142485117 142485299 -20114631 + MIR SINE MIR 36 236 -26 739 200 21 14 chrX 142488361 142488506 -20111424 - AluJb SINE Alu -64 248 103 277 281 269 0 chrX 142489003 142489163 -20110767 - MIR SINE MIR -16 246 44 218 326 34 0 chrX 142489294 142489383 -20110547 - L2 LINE L2 -1037 2277 2186 1956 137 3 27 chrX 142489597 142489897 -20110033 + AluJo SINE Alu 1 293 -19 2307 113 3 0 chrX 142490255 142490566 -20109364 + AluSq SINE Alu 1 312 -1 849 227 13 62 chrX 142490816 142491078 -20108852 + MIR SINE MIR 1 250 -12 248 284 32 53 chrX 142491172 142491267 -20108663 - L2 LINE L2 -21 3292 3200 355 279 85 16 chrX 142491348 142491477 -20108453 + MIR SINE MIR 3 140 -122 4350 215 50 23 chrX 142491485 142492725 -20107205 - L1M4c LINE L1 -4329 2055 696 2438 76 3 3 chrX 142493502 142493805 -20106125 - AluSc SINE Alu -6 303 1 190 283 29 109 chrX 142494280 142494333 -20105597 - L2 LINE L2 -467 2847 2791 2159 116 7 13 chrX 142494333 142494636 -20105294 - AluSx SINE Alu -10 302 2 190 283 29 109 chrX 142494636 142494720 -20105210 - L2 LINE L2 -523 2791 2721 297 250 80 89 chrX 142494724 142494764 -20105166 + MIR SINE MIR 1 40 -222 1069 205 16 0 chrX 142494764 142494949 -20104981 + MER5A DNA MER1_type 1 188 -1 297 250 80 89 chrX 142494949 142495020 -20104910 + MIR SINE MIR 40 111 -151 605 229 129 0 chrX 142495148 142495288 -20104642 - MIR SINE MIR -1 261 104 2254 98 7 3 chrX 142495331 142495627 -20104303 - AluJb SINE Alu -15 297 1 453 248 112 6 chrX 142495657 142495818 -20104112 + L1ME4a LINE L1 5942 6119 -2 1898 184 29 36 chrX 142496018 142496432 -20103498 - L1MD3 LINE L1 -62 7933 7523 1494 191 143 49 chrX 142496441 142496736 -20103194 - Charlie2 DNA MER1_type -44 2818 2552 1605 171 10 26 chrX 142496736 142497040 -20102890 + AluJo SINE Alu 1 299 -13 1494 191 143 49 chrX 142497040 142497352 -20102578 - Charlie2 DNA MER1_type -310 2552 2154 731 190 0 0 chrX 142497356 142497472 -20102458 - FLAM_A SINE Alu -14 128 13 536 233 70 0 chrX 142497473 142497645 -20102285 - Charlie2 DNA MER1_type -699 2163 1980 4932 141 34 48 chrX 142497651 142498129 -20101801 - L1MB7 LINE L1 -16 6168 5685 877 182 0 0 chrX 142498129 142498261 -20101669 + FLAM_A SINE Alu 1 132 -1 4932 141 34 48 chrX 142498261 142498458 -20101472 - L1MB7 LINE L1 -499 5685 5487 2431 94 0 0 chrX 142498458 142498766 -20101164 - AluSg SINE Alu -2 308 1 1761 135 28 21 chrX 142498770 142499058 -20100872 - AluJo SINE Alu -22 290 1 4932 141 34 48 chrX 142499058 142499396 -20100534 - L1MB7 LINE L1 -700 5484 5179 1473 191 0 8 chrX 142499396 142499647 -20100283 + AluJb SINE Alu 6 254 -58 4932 141 34 48 chrX 142499647 142499821 -20100109 - L1MB7 LINE L1 -1005 5179 5004 3956 199 27 55 chrX 142499811 142500531 -20099399 - L1MB7 LINE L1 -1462 4684 3998 * 2184 107 0 0 chrX 142500531 142500821 -20099109 - AluSx SINE Alu -2 310 21 3956 199 27 55 chrX 142500821 142501094 -20098836 - L1MB7 LINE L1 -2148 3998 3719 1115 172 60 39 chrX 142501091 142501323 -20098607 - L1MB5 LINE L1 -10 6164 5928 * 1872 127 14 17 chrX 142502788 142503080 -20096850 + AluSx SINE Alu 1 291 -21 325 323 71 7 chrX 142503183 142503338 -20096592 - MER117 DNA MER1_type -13 184 20 800 247 88 9 chrX 142503354 142503581 -20096349 - MIR SINE MIR -14 248 4 378 211 13 0 chrX 142503587 142503663 -20096267 - L2 LINE L2 0 3313 3237 813 198 53 48 chrX 142505065 142505272 -20094658 + MIR SINE MIR 7 214 -48 2903 142 7 15 chrX 142505424 142505881 -20094049 + L1MB3 LINE L1 5724 6176 -7 239 200 0 29 chrX 142505995 142506065 -20093865 + GA-rich Low_complexity Low_complexity 1 68 0 1089 287 65 48 chrX 142509625 142510729 -20089201 - L1ME2 LINE L1 -258 5906 4771 1902 112 87 0 chrX 142510729 142511005 -20088925 - AluSx SINE Alu -12 300 1 1089 287 65 48 chrX 142511005 142511281 -20088649 - L1ME2 LINE L1 -1393 4771 4501 1600 176 80 9 chrX 142511297 142511511 -20088419 - L1MD2 LINE L1 -11 6348 6151 2358 88 7 7 chrX 142511511 142511816 -20088114 + AluSp SINE Alu 1 305 -8 1600 176 80 9 chrX 142511816 142512064 -20087866 - L1MD2 LINE L1 -208 6151 5804 755 119 8 0 chrX 142512062 142512180 -20087750 - L1MDa LINE L1 -4563 1977 1859 * 332 203 0 14 chrX 142512176 142512250 -20087680 - L1MD2 LINE L1 -560 5799 5727 * 6097 190 123 21 chrX 142512253 142512745 -20087185 - L1MDa LINE L1 -4046 2494 2054 2014 57 0 101 chrX 142512745 142513042 -20086888 + L1PA6 LINE L1 5881 6147 -7 6097 190 123 21 chrX 142513042 142514528 -20085402 - L1MDa LINE L1 -4486 2054 19 335 259 70 54 chrX 142514791 142514914 -20085016 - L1M4 LINE L1 -1778 4368 4241 2323 84 7 3 chrX 142514914 142515212 -20084718 - AluSg1 SINE Alu -10 299 1 335 259 70 54 chrX 142515212 142515294 -20084636 - L1M4 LINE L1 -1905 4241 4162 21 0 0 0 chrX 142515294 142515315 -20084615 + AT_rich Low_complexity Low_complexity 1 21 0 301 93 56 19 chrX 142515328 142515351 -20084579 + (TA)n Simple_repeat Simple_repeat 1 22 -89 2290 90 0 7 chrX 142515351 142515640 -20084290 - AluSg SINE Alu -23 287 1 301 93 56 19 chrX 142515640 142515723 -20084207 + (TA)n Simple_repeat Simple_repeat 22 111 0 2205 113 3 22 chrX 142515741 142516139 -20083791 - AluSx SINE Alu 0 392 1 301 287 120 56 chrX 142516685 142517161 -20082769 - HAL1b LINE L1 -593 1770 419 6404 156 7 10 chrX 142517592 142518323 -20081607 - L1PA16 LINE L1 -9 6157 5425 2016 140 0 3 chrX 142518323 142518615 -20081315 - AluSx SINE Alu -21 291 1 6404 156 7 10 chrX 142518615 142519922 -20080008 - L1PA16 LINE L1 -741 5425 4125 862 317 69 19 chrX 142520027 142520669 -20079261 - L2 LINE L2 -22 3291 2623 379 203 0 0 chrX 142520669 142520738 -20079192 - MLT1A1 LTR MaLR 0 365 297 448 233 9 26 chrX 142520742 142520858 -20079072 - L1MA9 LINE L1 -30 6282 6169 1167 157 28 143 chrX 142520858 142521215 -20078715 - MLT1A1 LTR MaLR -49 316 1 1445 316 24 39 chrX 142521215 142521803 -20078127 - L2 LINE L2 -687 2627 2049 478 274 51 74 chrX 142521808 142521882 -20078048 + L1ME4a LINE L1 5638 5712 -409 2233 104 0 7 chrX 142521882 142522181 -20077749 - AluSq SINE Alu -16 297 1 478 274 51 74 chrX 142522181 142522442 -20077488 + L1ME4a LINE L1 5712 5965 -156 245 290 10 60 chrX 142522445 142522456 -20077474 + L2 LINE L2 3206 3216 -97 2258 120 0 0 chrX 142522456 142522765 -20077165 - AluSx SINE Alu -3 309 1 245 290 10 60 chrX 142522765 142522853 -20077077 + L2 LINE L2 3216 3300 -13 294 73 0 0 chrX 142522853 142522894 -20077036 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 404 205 90 8 chrX 142522905 142523027 -20076903 + L1ME4a LINE L1 5988 6119 -2 2395 63 0 16 chrX 142523288 142523604 -20076326 - AluY SINE Alu 0 311 1 986 128 67 17 chrX 142524205 142524385 -20075545 - MER53 DNA DNA 0 189 1 188 355 154 9 chrX 142524470 142524580 -20075350 - MIR SINE MIR -60 148 23 218 302 0 0 chrX 142524748 142524801 -20075129 + MER5A DNA MER1_type 2 54 -135 297 242 50 83 chrX 142526105 142526225 -20073705 - L2 LINE L2 -19 3294 3179 210 37 0 0 chrX 142526645 142526672 -20073258 + (TC)n Simple_repeat Simple_repeat 1 27 0 696 265 56 5 chrX 142526763 142526959 -20072971 + MIR SINE MIR 55 260 -2 198 0 0 0 chrX 142527876 142527898 -20072032 + (GCTG)n Simple_repeat Simple_repeat 4 25 0 484 328 98 32 chrX 142528789 142529127 -20070803 + L2 LINE L2 2900 3259 -13 286 197 113 0 chrX 142529144 142529215 -20070715 - MIR SINE MIR -55 207 129 183 80 0 0 chrX 142529222 142529247 -20070683 + (A)n Simple_repeat Simple_repeat 1 25 0 267 31 0 0 chrX 142529322 142529354 -20070576 + (TA)n Simple_repeat Simple_repeat 2 33 0 2301 75 0 32 chrX 142529354 142529662 -20070268 - AluY SINE Alu -3 308 11 477 304 53 12 chrX 142529758 142529929 -20070001 - MER5B DNA MER1_type 0 178 1 313 243 125 20 chrX 142530090 142530134 -20069796 - MER113 DNA MER1_type? -348 173 135 2421 88 41 3 chrX 142530134 142530475 -20069455 + L1MB3 LINE L1 5826 6179 -4 313 243 125 20 chrX 142530475 142530582 -20069348 - MER113 DNA MER1_type? -386 135 6 589 276 15 0 chrX 142530588 142530722 -20069208 - MIR3 SINE MIR -51 157 22 359 338 118 55 chrX 142531038 142531511 -20068419 - L2 LINE L2 -556 2758 2256 470 249 91 12 chrX 142532399 142532454 -20067476 - MIR SINE MIR -1 261 212 369 0 0 0 chrX 142532454 142532495 -20067435 + (TA)n Simple_repeat Simple_repeat 1 41 0 470 249 91 12 chrX 142532495 142532604 -20067326 - MIR SINE MIR -50 212 84 1550 120 22 0 chrX 142532803 142533028 -20066902 + MER30 DNA MER1_type 1 230 0 435 330 47 11 chrX 142534011 142534202 -20065728 - MIR3 SINE MIR -2 206 9 225 0 0 0 chrX 142534836 142534861 -20065069 + (A)n Simple_repeat Simple_repeat 1 25 0 2216 109 0 13 chrX 142537450 142537754 -20062176 + AluSx SINE Alu 1 300 -12 633 186 11 5 chrX 142538051 142538194 -20061736 + L1MC4 LINE L1 7107 7246 -733 328 233 0 0 chrX 142538201 142538274 -20061656 - L1MC4 LINE L1 -668 7374 7302 254 254 16 0 chrX 142538305 142538368 -20061562 + L1MC4 LINE L1 7390 7453 -589 378 266 18 9 chrX 142538541 142538650 -20061280 - L2 LINE L2 -9 3304 3195 225 250 0 18 chrX 142538820 142538876 -20061054 + (TG)n Simple_repeat Simple_repeat 2 56 0 187 381 40 8 chrX 142539282 142539408 -20060522 + MIR3 SINE MIR 56 185 -23 654 37 0 0 chrX 142539697 142539778 -20060152 + (TTTAG)n Simple_repeat Simple_repeat 1 81 0 771 280 63 4 chrX 142539906 142540145 -20059785 + MIR SINE MIR 2 254 -8 661 172 196 31 chrX 142540618 142540781 -20059149 - MER20 DNA MER1_type 0 219 30 415 242 185 40 chrX 142540845 142541072 -20058858 + L2 LINE L2 2134 2393 -921 1468 203 75 57 chrX 142541127 142541581 -20058349 - MLT1C LTR MaLR 0 467 6 1441 258 35 20 chrX 142541586 142542233 -20057697 - L2 LINE L2 -31 3282 2630 1673 238 116 36 chrX 142542255 142543083 -20056847 + L2 LINE L2 2420 3312 -1 322 264 25 33 chrX 142543131 142543252 -20056678 - MER5A DNA MER1_type -18 171 52 741 225 158 5 chrX 142543258 142543480 -20056450 - MIR SINE MIR -5 257 2 2465 80 3 0 chrX 142544613 142544914 -20055016 - AluSp SINE Alu -11 302 1 22 0 0 0 chrX 142546760 142546782 -20053148 + AT_rich Low_complexity Low_complexity 1 22 0 684 169 11 22 chrX 142546931 142547109 -20052821 + CT-rich Low_complexity Low_complexity 2 177 0 206 346 128 26 chrX 142548004 142548160 -20051770 - L3 LINE CR1 -16 1561 1390 558 211 0 64 chrX 142548172 142548328 -20051602 - L2 LINE L2 -1 3312 3167 467 298 30 103 chrX 142548376 142548512 -20051418 - L3 LINE CR1 -481 1096 952 1729 137 210 11 chrX 142548512 142548682 -20051248 + MSTA LTR MaLR 1 136 -292 225 0 0 0 chrX 142548682 142548707 -20051223 + (TC)n Simple_repeat Simple_repeat 1 25 0 1729 137 210 11 chrX 142548707 142548893 -20051037 + MSTA LTR MaLR 136 428 0 467 298 30 103 chrX 142548893 142549085 -20050845 - L3 LINE CR1 -625 952 792 200 154 51 0 chrX 142549755 142549794 -20050136 + C-rich Low_complexity Low_complexity 4 44 0 265 333 11 16 chrX 142550580 142550769 -20049161 + L2 LINE L2 2906 3093 -179 519 263 222 0 chrX 142550839 142551010 -20048920 - MIR SINE MIR -24 238 30 223 372 0 0 chrX 142551791 142551877 -20048053 + MIR SINE MIR 10 95 -167 4495 160 43 32 chrX 142551880 142552357 -20047573 - L1MB7 LINE L1 -93 6091 5620 1677 169 17 33 chrX 142552357 142552659 -20047271 - AluJo SINE Alu -15 297 1 4495 160 43 32 chrX 142552659 142553434 -20046496 - L1MB7 LINE L1 -564 5620 4822 221 261 14 14 chrX 142554144 142554213 -20045717 + MIR SINE MIR 2 70 -192 937 253 145 30 chrX 142554223 142554622 -20045308 + LTR16A LTR ERVL 1 445 -5 1039 248 128 11 chrX 142554789 142555140 -20044790 + L1ME2 LINE L1 5683 6074 -90 540 84 0 0 chrX 142555141 142555224 -20044706 + (CA)n Simple_repeat Simple_repeat 1 83 0 1318 215 118 12 chrX 142555665 142556004 -20043926 + L1ME3 LINE L1 5701 6075 -87 540 84 0 0 chrX 142556004 142556087 -20043843 + (CA)n Simple_repeat Simple_repeat 1 83 0 290 235 108 10 chrX 142556226 142556328 -20043602 - L1ME4a LINE L1 -41 6080 5969 1094 116 26 42 chrX 142556851 142557040 -20042890 + MER5A DNA MER1_type 4 189 0 226 292 0 0 chrX 142557679 142557727 -20042203 + (CACG)n Simple_repeat Simple_repeat 4 51 0 2196 195 67 118 chrX 142557742 142558215 -20041715 + MER63D DNA MER1_type 104 600 -461 1886 171 3 0 chrX 142558215 142558513 -20041417 - AluJb SINE Alu -13 299 1 2196 195 67 118 chrX 142558513 142558908 -20041022 + MER63D DNA MER1_type 600 917 -144 1915 132 40 20 chrX 142558908 142559204 -20040726 - AluJo SINE Alu -10 302 1 2196 195 67 118 chrX 142559204 142559324 -20040606 + MER63D DNA MER1_type 917 1042 -19 284 318 195 19 chrX 142559766 142560027 -20039903 - L2 LINE L2 0 3272 2966 571 173 26 90 chrX 142560081 142560237 -20039693 + MER106B DNA MER1_type 914 1059 0 873 278 44 50 chrX 142560366 142560754 -20039176 - L1MEd LINE L1 -4897 1222 836 2411 91 0 3 chrX 142560754 142561052 -20038878 + AluSx SINE Alu 1 297 -15 873 278 44 50 chrX 142561052 142561188 -20038742 - L1MEd LINE L1 -5283 836 701 665 211 156 35 chrX 142561217 142561365 -20038565 + MIR SINE MIR 19 198 -64 562 101 13 0 chrX 142561365 142561444 -20038486 + MADE1 DNA Mariner 1 80 0 665 211 156 35 chrX 142561444 142561494 -20038436 + MIR SINE MIR 198 241 -21 1523 91 46 0 chrX 142561937 142562156 -20037774 - L1PA10 LINE L1 0 6168 5940 226 227 15 15 chrX 142563111 142563177 -20036753 + (CA)n Simple_repeat Simple_repeat 2 67 0 415 293 8 8 chrX 142563652 142563785 -20036145 + MIR SINE MIR 23 155 -107 327 218 0 0 chrX 142563791 142563846 -20036084 + Tigger5 DNA MER2_type 1 55 -2268 560 174 11 0 chrX 142563851 142563943 -20035987 + Tigger5 DNA MER2_type 2231 2323 0 1839 177 0 6 chrX 142564272 142564583 -20035347 + AluJo SINE Alu 1 309 -3 186 322 0 0 chrX 142564682 142564741 -20035189 - L2 LINE L2 -224 3048 2990 407 291 8 0 chrX 142564785 142564902 -20035028 - MIR SINE MIR -88 174 57 191 333 19 19 chrX 142565063 142565171 -20034759 - L2 LINE L2 -654 2660 2553 21 71 0 0 chrX 142565365 142565407 -20034523 + AT_rich Low_complexity Low_complexity 1 42 0 1107 239 91 31 chrX 142565414 142565795 -20034135 + L1MC4 LINE L1 7492 7914 -128 279 0 0 0 chrX 142565795 142565826 -20034104 + (TG)n Simple_repeat Simple_repeat 2 32 0 1107 239 91 31 chrX 142565826 142565963 -20033967 + L1MC4 LINE L1 7914 8041 -1 661 223 14 0 chrX 142568371 142568519 -20031411 - MIR SINE MIR -21 241 92 208 150 0 25 chrX 142569673 142569713 -20030217 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 276 253 0 51 chrX 142570501 142570580 -20029350 - L2 LINE L2 -1 3312 3238 3246 103 224 14 chrX 142570812 142571396 -20028534 - MER39 LTR ERV1 0 707 1 1979 157 26 14 chrX 142571638 142571870 -20028060 + MER63 DNA MER1_type 681 920 -140 2255 99 10 3 chrX 142571870 142572172 -20027758 - AluSg SINE Alu -6 304 1 1979 157 26 14 chrX 142572172 142572289 -20027641 + MER63 DNA MER1_type 920 1034 -26 2202 102 0 14 chrX 142572447 142572741 -20027189 - AluSx SINE Alu -8 304 15 369 0 0 0 chrX 142573707 142573748 -20026182 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 258 0 15 chrX 142575026 142575092 -20024838 - MIR SINE MIR -42 220 156 379 251 135 37 chrX 142575694 142575857 -20024073 + MIR SINE MIR 14 192 -70 237 357 148 20 chrX 142576167 142576472 -20023458 - L2 LINE L2 -558 2756 2413 1780 96 24 0 chrX 142576472 142576722 -20023208 + L1PA10 LINE L1 5912 6167 -1 458 278 46 29 chrX 142576898 142577092 -20022838 - L1M4 LINE L1 -1907 4239 4044 738 275 113 0 chrX 142577100 142577198 -20022732 - MIR SINE MIR -5 257 172 306 0 0 0 chrX 142577198 142577232 -20022698 + (TTA)n Simple_repeat Simple_repeat 2 35 0 738 275 113 0 chrX 142577232 142577362 -20022568 - MIR SINE MIR -90 172 3 926 294 79 29 chrX 142577374 142578021 -20021909 - L1M4 LINE L1 -2106 4040 3362 254 194 16 0 chrX 142578191 142578253 -20021677 + CT-rich Low_complexity Low_complexity 6 68 0 798 283 40 40 chrX 142578463 142578735 -20021195 + L2 LINE L2 2953 3224 -48 1546 183 13 33 chrX 142579884 142580190 -20019740 - AluJo SINE Alu -2 310 11 872 157 7 7 chrX 142580195 142580335 -20019595 - AluJo SINE Alu -172 140 1 346 208 69 36 chrX 142580376 142580485 -20019445 - L2 LINE L2 -37 3235 3127 * 392 358 86 16 chrX 142580476 142580663 -20019267 + L2 LINE L2 3072 3271 -1 186 167 0 0 chrX 142580663 142580699 -20019231 + GA-rich Low_complexity Low_complexity 1 36 0 3291 174 31 8 chrX 142581001 142581586 -20018344 + L1MB5 LINE L1 5570 6167 -7 2250 98 0 0 chrX 142582088 142582374 -20017556 + L1PA15 LINE L1 5865 6150 -15 278 180 0 49 chrX 142583191 142583252 -20016678 - L2 LINE L2 -1 3271 3214 2214 125 0 0 chrX 142583303 142583599 -20016331 - AluSx SINE Alu -16 296 1 472 256 0 40 chrX 142585087 142585212 -20014718 - MER94 DNA DNA 0 134 15 1597 189 16 23 chrX 142585525 142585831 -20014099 + AluJo SINE Alu 1 304 -8 23 0 0 0 chrX 142585984 142586007 -20013923 + AT_rich Low_complexity Low_complexity 1 23 0 3998 149 9 15 chrX 142586155 142586821 -20013109 + L1MB8 LINE L1 5514 6175 -3 593 219 110 7 chrX 142587081 142587227 -20012703 - MIR3 SINE MIR -32 176 16 188 98 0 49 chrX 142587651 142587692 -20012238 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 301 321 49 95 chrX 142588295 142588538 -20011392 + L2 LINE L2 3029 3260 -12 180 111 0 0 chrX 142588538 142588565 -20011365 + (GGATG)n Simple_repeat Simple_repeat 3 29 0 257 253 113 47 chrX 142588598 142588748 -20011182 - L2 LINE L2 -648 2666 2507 1243 198 0 25 chrX 142589968 142590078 -20009852 - L1MB5 LINE L1 -50 6124 6015 377 226 28 99 chrX 142590078 142590259 -20009671 - L1MC2 LINE L1 -328 6016 5849 505 325 81 7 chrX 142590303 142590516 -20009414 - MIR SINE MIR -38 224 4 2469 73 3 0 chrX 142590894 142591197 -20008733 + AluSp SINE Alu 1 304 -9 189 0 0 0 chrX 142591700 142591721 -20008209 + (TAA)n Simple_repeat Simple_repeat 2 22 0 298 281 65 43 chrX 142592285 142592424 -20007506 - MIR3 SINE MIR -17 191 50 743 216 24 114 chrX 142593025 142593280 -20006650 - MIR SINE MIR 0 262 31 201 235 99 49 chrX 142593357 142593438 -20006492 - L2 LINE L2 -607 2707 2623 245 313 69 23 chrX 142593644 142593775 -20006155 - L1MC2 LINE L1 -2086 5722 5586 767 120 0 19 chrX 142594111 142594219 -20005711 - FRAM SINE Alu -19 157 52 664 231 63 32 chrX 142594748 142594969 -20004961 - L2 LINE L2 0 3313 3086 490 29 29 0 chrX 142596212 142596280 -20003650 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 375 280 0 0 chrX 142597101 142597194 -20002736 + MIR3 SINE MIR 110 202 -6 847 256 57 32 chrX 142597525 142597771 -20002159 + MIR SINE MIR 8 259 -3 246 371 149 0 chrX 142598149 142598324 -20001606 + L3b LINE CR1 1295 1495 -88 * 458 307 13 20 chrX 142598323 142598476 -20001454 - MIR3 SINE MIR -11 197 46 2403 94 3 0 chrX 142599692 142600001 -19999929 - AluSx SINE Alu -2 310 1 201 74 0 0 chrX 142601187 142601214 -19998716 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2437 97 0 0 chrX 142601484 142601794 -19998136 - AluSg SINE Alu 0 310 1 585 207 90 27 chrX 142602284 142602449 -19997481 + MIR SINE MIR 23 204 -58 1848 139 3 36 chrX 142602449 142602751 -19997179 + AluJb SINE Alu 1 292 -20 585 207 90 27 chrX 142602751 142602801 -19997129 + MIR SINE MIR 204 249 -13 211 162 0 0 chrX 142603177 142603214 -19996716 - MIR SINE MIR -70 192 156 2377 153 25 23 chrX 142603443 142603875 -19996055 + L1MA9 LINE L1 3761 4193 -1953 2037 123 0 43 chrX 142603876 142604200 -19995730 + AluSx SINE Alu 1 310 -2 1113 118 0 0 chrX 142604229 142604381 -19995549 + AluSg/x SINE Alu 139 290 -20 4029 142 13 63 chrX 142604389 142604499 -19995431 + L1MA9 LINE L1 4578 4692 -1620 2665 51 0 0 chrX 142604499 142604810 -19995120 - AluY SINE Alu 0 311 1 4029 142 13 63 chrX 142604810 142604892 -19995038 + L1MA9 LINE L1 4692 4777 -1535 1610 173 18 28 chrX 142604892 142605176 -19994754 + AluJo SINE Alu 10 290 -22 4029 142 13 63 chrX 142605176 142606214 -19993716 + L1MA9 LINE L1 4777 5731 -581 1719 168 0 52 chrX 142606214 142606523 -19993407 + AluJo SINE Alu 1 293 -19 4029 142 13 63 chrX 142606523 142606724 -19993206 + L1MA9 LINE L1 5731 5940 -372 840 165 117 11 chrX 142606731 142606919 -19993011 + L1MA9 LINE L1 6067 6274 -38 721 203 0 0 chrX 142607994 142608117 -19991813 - FLAM_C SINE Alu -10 133 11 867 243 19 5 chrX 142608768 142608974 -19990956 - MIR SINE MIR -13 249 41 238 311 0 0 chrX 142609576 142609666 -19990264 - L1MC4 LINE L1 -1339 6703 6614 * 267 253 23 0 chrX 142609591 142609678 -19990252 + L1MC4 LINE L1 6615 6703 -1339 510 245 26 26 chrX 142609681 142609832 -19990098 - MIR SINE MIR -107 155 5 1305 145 0 20 chrX 142609985 142610185 -19989745 + AluJb SINE Alu 1 196 -116 779 191 7 27 chrX 142610185 142610332 -19989598 + AluJb SINE Alu 152 295 -17 2431 72 7 0 chrX 142610889 142611181 -19988749 + AluSg SINE Alu 1 294 -16 1454 217 75 36 chrX 142611226 142611586 -19988344 + MLT1A2 LTR MaLR 1 374 0 565 230 103 39 chrX 142611712 142611916 -19988014 - L2 LINE L2 -14 3299 3083 976 179 0 17 chrX 142612028 142612191 -19987739 + AluJb SINE Alu 137 298 -14 2343 91 3 3 chrX 142612191 142612500 -19987430 + AluSc SINE Alu 1 309 0 3021 171 19 6 chrX 142612510 142613043 -19986887 - L1MB5 LINE L1 -49 6125 5586 1149 215 176 22 chrX 142613129 142613487 -19986443 - MLT1E1 LTR MaLR -41 613 201 268 172 0 17 chrX 142614054 142614112 -19985818 - MLT1E1 LTR MaLR -435 219 163 719 191 0 8 chrX 142614130 142614256 -19985674 - L1PB4 LINE L1 -6 6150 6026 2882 96 25 78 chrX 142614257 142614769 -19985161 - L1PB4 LINE L1 -314 5842 5358 2314 88 0 10 chrX 142614909 142615205 -19984725 - AluSc SINE Alu -16 293 1 186 383 62 0 chrX 142615312 142615393 -19984537 + L2 LINE L2 3139 3224 -48 364 354 104 12 chrX 142617074 142617238 -19982692 + MIR3 SINE MIR 9 187 -21 648 245 99 7 chrX 142617324 142617475 -19982455 - MIR3 SINE MIR -28 180 16 666 215 28 106 chrX 142617478 142617531 -19982399 - HAL1 LINE L1 -1 2506 2450 2535 68 10 0 chrX 142617531 142617839 -19982091 + AluY SINE Alu 1 311 0 441 0 0 0 chrX 142617849 142617898 -19982032 + (TA)n Simple_repeat Simple_repeat 2 50 0 666 215 28 106 chrX 142617898 142618117 -19981813 - HAL1 LINE L1 -66 2441 2245 1628 202 96 5 chrX 142618225 142618602 -19981328 - L1ME1 LINE L1 -32 6134 5724 263 261 0 31 chrX 142619560 142619625 -19980305 + L2 LINE L2 3208 3270 -2 1269 241 83 22 chrX 142619657 142620068 -19979862 + L1ME4a LINE L1 5485 5920 -201 336 24 0 0 chrX 142620068 142620109 -19979821 + (TG)n Simple_repeat Simple_repeat 1 41 0 731 206 53 0 chrX 142620148 142620279 -19979651 + AluJo SINE Alu 127 264 -48 233 171 67 105 chrX 142620292 142620397 -19979533 + L1ME4a LINE L1 5983 6083 -38 551 181 0 0 chrX 142620518 142620601 -19979329 - FRAM SINE Alu -29 147 65 848 164 8 0 chrX 142620707 142620835 -19979095 + AluJb SINE Alu 5 133 -179 1500 164 4 27 chrX 142620838 142621101 -19978829 + AluJo SINE Alu 1 257 -55 189 0 0 0 chrX 142621112 142621133 -19978797 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2854 109 3 3 chrX 142621560 142621935 -19977995 - THE1C LTR MaLR 0 375 1 354 304 22 30 chrX 142622073 142622208 -19977722 - MIR3 SINE MIR -41 167 34 232 364 58 0 chrX 142622224 142622345 -19977585 + L2 LINE L2 2245 2372 -942 237 250 0 0 chrX 142622640 142622692 -19977238 - L2 LINE L2 0 3313 3262 10877 189 65 21 chrX 142623050 142624273 -19975657 + L1MD2 LINE L1 19 1187 -5566 1940 146 3 10 chrX 142624273 142624574 -19975356 + AluJb SINE Alu 1 299 -13 10877 189 65 21 chrX 142624574 142625535 -19974395 + L1MD2 LINE L1 1187 2104 -4649 262 67 44 0 chrX 142625535 142625580 -19974350 + (TA)n Simple_repeat Simple_repeat 2 48 0 10877 189 65 21 chrX 142625580 142628055 -19971875 + L1MD2 LINE L1 2104 4469 -2284 2692 88 24 118 chrX 142628055 142628144 -19971786 - MLT2D LTR ERVL 0 414 318 2571 43 0 13 chrX 142628144 142628449 -19971481 + AluY SINE Alu 2 302 -9 2692 88 24 118 chrX 142628449 142628465 -19971465 - MLT2D LTR ERVL -96 318 302 216 0 0 0 chrX 142628465 142628489 -19971441 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2692 88 24 118 chrX 142628489 142628839 -19971091 - MLT2D LTR ERVL -112 302 1 10877 189 65 21 chrX 142628839 142629714 -19970216 + L1MD2 LINE L1 4469 6278 -475 204 289 0 0 chrX 142629901 142629946 -19969984 + (CA)n Simple_repeat Simple_repeat 2 46 0 1799 122 33 56 chrX 142630247 142630550 -19969380 + AluSx SINE Alu 1 296 -16 466 269 40 27 chrX 142630712 142630861 -19969069 + L2 LINE L2 3162 3312 -1 276 0 29 0 chrX 142630938 142630973 -19968957 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2258 93 0 7 chrX 142630973 142631256 -19968674 - AluY SINE Alu -28 283 1 2256 87 38 0 chrX 142631426 142631714 -19968216 - AluSx SINE Alu -13 299 1 615 78 0 0 chrX 142632751 142632884 -19967046 + AluSg/x SINE Alu 205 337 0 1686 164 14 17 chrX 142633584 142633750 -19966180 - AluJo SINE Alu -20 292 126 288 0 0 0 chrX 142633750 142633782 -19966148 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1686 164 14 17 chrX 142633782 142633908 -19966022 - AluJo SINE Alu -186 126 1 664 270 43 22 chrX 142633948 142634178 -19965752 + MIR SINE MIR 21 255 -7 2198 115 26 3 chrX 142634181 142634304 -19965626 + AluSx SINE Alu 1 120 -192 423 0 0 0 chrX 142634304 142634351 -19965579 + (CA)n Simple_repeat Simple_repeat 2 48 0 2198 115 26 3 chrX 142634351 142634531 -19965399 + AluSx SINE Alu 120 311 -1 209 176 0 0 chrX 142634548 142634582 -19965348 + GA-rich Low_complexity Low_complexity 2 35 0 2210 66 0 56 chrX 142635838 142636140 -19963790 - AluSc SINE Alu -24 285 1 704 208 72 24 chrX 142637520 142637727 -19962203 - MIR SINE MIR -12 250 34 648 167 18 0 chrX 142637802 142637949 -19961981 + FLAM_C SINE Alu 2 150 0 429 251 70 35 chrX 142638084 142638255 -19961675 - MIR SINE MIR 0 262 86 222 37 0 0 chrX 142638683 142638710 -19961220 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 2506 79 0 0 chrX 142639417 142639720 -19960210 + AluSx SINE Alu 1 303 -9 499 295 39 6 chrX 142640673 142640864 -19959066 + MIR SINE MIR 26 220 -42 218 171 0 0 chrX 142640890 142640925 -19959005 + CT-rich Low_complexity Low_complexity 2 36 0 794 169 14 7 chrX 142642543 142642691 -19957239 + AluJb SINE Alu 164 312 0 2704 51 0 0 chrX 142642756 142643067 -19956863 - AluY SINE Alu 0 311 1 182 118 29 0 chrX 142643328 142643362 -19956568 + (TATG)n Simple_repeat Simple_repeat 4 38 0 390 91 0 0 chrX 142643412 142643467 -19956463 + (CA)n Simple_repeat Simple_repeat 2 56 0 2228 88 10 7 chrX 142643501 142643796 -19956134 - AluSx SINE Alu -16 296 1 484 328 0 16 chrX 142643796 142643985 -19955945 - L3 LINE CR1 -37 1540 1355 1653 167 101 67 chrX 142644213 142644649 -19955281 - MLT1C LTR MaLR -2 465 15 2422 91 3 0 chrX 142644649 142644945 -19954985 - AluSg SINE Alu -13 297 1 234 157 36 0 chrX 142644960 142645043 -19954887 + (TA)n Simple_repeat Simple_repeat 1 86 0 35 98 0 0 chrX 142645212 142645324 -19954606 + AT_rich Low_complexity Low_complexity 1 112 0 2409 87 0 0 chrX 142645415 142645713 -19954217 - AluY SINE Alu -13 298 1 439 127 141 0 chrX 142645772 142645843 -19954087 - FRAM/FAM SINE Alu -103 73 1 236 281 0 0 chrX 142646884 142646941 -19952989 - L2 LINE L2 -1 3271 3215 234 0 0 0 chrX 142647083 142647109 -19952821 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 291 28 0 0 chrX 142647108 142647144 -19952786 + (GA)n Simple_repeat Simple_repeat 1 36 0 235 217 217 0 chrX 142648448 142648563 -19951367 + L1ME4a LINE L1 5981 6120 -1 1178 151 10 0 chrX 142649626 142649825 -19950105 - L1MA7 LINE L1 -138 6153 5953 507 122 0 137 chrX 142649829 142649968 -19949962 + L1MA7 LINE L1 6172 6291 0 2220 75 0 41 chrX 142651063 142651380 -19948550 + AluSx SINE Alu 2 306 0 597 14 0 0 chrX 142651390 142651460 -19948470 + (CA)n Simple_repeat Simple_repeat 2 71 0 218 175 0 35 chrX 142652210 142652267 -19947663 + GA-rich Low_complexity Low_complexity 2 56 0 242 176 20 0 chrX 142652899 142652950 -19946980 + L2 LINE L2 3262 3313 0 339 85 0 0 chrX 142653352 142653399 -19946531 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 1729 179 0 19 chrX 142653408 142653716 -19946214 - AluJo SINE Alu 0 312 11 186 238 0 0 chrX 142655402 142655444 -19944486 - MIR SINE MIR -26 236 195 2303 107 0 0 chrX 142655920 142656218 -19943712 + AluSx SINE Alu 1 298 -14 2260 109 0 0 chrX 142656220 142656513 -19943417 + AluSx SINE Alu 3 295 -17 303 280 185 21 chrX 142656534 142656723 -19943207 - L2 LINE L2 -139 3174 2955 546 210 8 0 chrX 142656732 142656851 -19943079 - MIR SINE MIR -70 192 73 301 79 26 79 chrX 142656853 142656929 -19943001 + L1MA8 LINE L1 6219 6290 -1 1751 169 14 4 chrX 142656936 142657214 -19942716 + AluJb SINE Alu 1 281 -31 485 217 0 0 chrX 142657402 142657494 -19942436 - L2 LINE L2 -4 3268 3177 566 283 110 5 chrX 142657964 142658155 -19941775 - MIR SINE MIR -44 218 8 275 213 75 0 chrX 142658753 142658833 -19941097 - L2 LINE L2 -943 2371 2286 233 354 9 9 chrX 142659075 142659188 -19940742 - L2 LINE L2 -266 3047 2935 1799 128 26 46 chrX 142659193 142659497 -19940433 + AluJb SINE Alu 1 298 -14 2225 87 49 0 chrX 142659731 142660017 -19939913 - AluY SINE Alu -11 300 1 3442 71 8 21 chrX 142660723 142661202 -19938728 + L1MA2 LINE L1 5822 6294 -10 1454 225 158 21 chrX 142661533 142662009 -19937921 - MLT1F LTR MaLR 0 542 2 279 250 0 15 chrX 142662464 142662532 -19937398 + (TATG)n Simple_repeat Simple_repeat 2 68 0 195 42 0 0 chrX 142663830 142663854 -19936076 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 230 81 27 0 chrX 142664078 142664115 -19935815 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 207 0 0 0 chrX 142664378 142664401 -19935529 + (A)n Simple_repeat Simple_repeat 1 23 0 2247 118 0 0 chrX 142664465 142664762 -19935168 - AluSg SINE Alu -13 297 1 189 0 0 0 chrX 142664764 142664785 -19935145 + (T)n Simple_repeat Simple_repeat 1 21 0 2285 80 19 26 chrX 142664785 142665096 -19934834 - AluSx SINE Alu 0 312 4 2196 128 20 0 chrX 142665616 142665922 -19934008 + AluSx SINE Alu 1 312 0 428 310 95 25 chrX 142665922 142666164 -19933766 - L2 LINE L2 -12 3260 3002 201 315 146 0 chrX 142666222 142666352 -19933578 - L2 LINE L2 -464 2850 2702 210 255 0 0 chrX 142666499 142666546 -19933384 + T-rich Low_complexity Low_complexity 5 51 0 183 42 0 0 chrX 142666835 142666859 -19933071 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1042 99 0 0 chrX 142666868 142666999 -19932931 - AluSq SINE Alu -51 262 132 423 254 84 74 chrX 142670553 142670843 -19929087 - L1MC4 LINE L1 -5 8037 7626 24 67 0 0 chrX 142671444 142671489 -19928441 + GC_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chrX 142677173 142677195 -19922735 + AT_rich Low_complexity Low_complexity 1 22 0 204 283 19 0 chrX 142678934 142678987 -19920943 - MIR SINE MIR -69 139 86 319 299 63 6 chrX 142679331 142679505 -19920425 + L1ME4a LINE L1 5732 5915 -206 432 0 0 0 chrX 142679615 142679663 -19920267 + (TG)n Simple_repeat Simple_repeat 1 48 0 536 270 68 71 chrX 142680240 142680592 -19919338 + L1ME4a LINE L1 5685 6035 -86 353 174 77 77 chrX 142681011 142681166 -19918764 + L1ME4a LINE L1 5954 6108 -13 2376 74 3 16 chrX 142681949 142682258 -19917672 - AluY SINE Alu -6 305 1 853 112 0 0 chrX 142682961 142683077 -19916853 - FLAM_C SINE Alu -16 117 2 302 313 27 9 chrX 142683232 142683344 -19916586 - MIR3 SINE MIR -52 156 43 1022 194 0 0 chrX 142683451 142683626 -19916304 + FAM SINE Alu 1 175 0 519 261 46 65 chrX 142684044 142684304 -19915626 + MLT1K LTR MaLR 9 263 -325 1949 164 7 0 chrX 142684304 142684614 -19915316 - AluJo SINE Alu 0 312 1 254 307 94 16 chrX 142684832 142684959 -19914971 + MLT1K LTR MaLR 405 541 -47 456 259 18 0 chrX 142684960 142685072 -19914858 - L2 LINE L2 0 3313 3200 2337 81 30 3 chrX 142685708 142686005 -19913925 - AluSq SINE Alu -8 305 1 512 189 66 0 chrX 142686310 142686416 -19913514 - MER94 DNA DNA -21 113 1 1935 151 3 0 chrX 142686521 142686805 -19913125 + AluSx SINE Alu 11 295 -17 564 234 7 36 chrX 142686815 142686952 -19912978 + FLAM_C SINE Alu 1 133 0 3481 136 23 94 chrX 142687453 142687621 -19912309 - LTR8 LTR ERV1 0 691 513 1757 117 113 0 chrX 142687621 142687900 -19912030 - AluSx SINE Alu 0 308 1 3481 136 23 94 chrX 142687900 142688474 -19911456 - LTR8 LTR ERV1 -178 513 1 683 247 240 25 chrX 142688561 142688999 -19910931 + MLT1H1 LTR MaLR 4 590 0 458 29 72 0 chrX 142689019 142689088 -19910842 - L1MA10 LINE L1 -1 6333 6260 2762 147 24 18 chrX 142689151 142689656 -19910274 + L1MB3 LINE L1 5676 6183 0 73 23 0 0 chrX 142689688 142689775 -19910155 + AT_rich Low_complexity Low_complexity 1 87 0 2072 133 7 3 chrX 142689775 142690083 -19909847 + AluSx SINE Alu 1 309 -3 1258 114 13 97 chrX 142690317 142690544 -19909386 + AluJb SINE Alu 82 289 -23 2191 91 28 11 chrX 142691000 142691286 -19908644 + AluSq SINE Alu 1 291 -22 575 272 6 17 chrX 142692233 142692413 -19907517 + LTR16C LTR ERVL 314 491 0 2030 128 0 0 chrX 142692460 142692775 -19907155 - AluJo SINE Alu 0 316 2 2024 211 126 82 chrX 142692783 142692881 -19907049 + HAL1 LINE L1 743 835 -1672 633 205 64 41 chrX 142692881 142693052 -19906878 - MER96 DNA MER1_type 0 175 1 2024 211 126 82 chrX 142693052 142693559 -19906371 + HAL1 LINE L1 835 1407 -1100 1531 110 0 5 chrX 142693559 142693768 -19906162 + AluSg/x SINE Alu 105 312 0 2024 211 126 82 chrX 142693768 142694104 -19905826 + HAL1 LINE L1 1407 1727 -780 756 173 8 8 chrX 142694361 142694494 -19905436 + AluJo SINE Alu 2 134 -178 21 36 0 0 chrX 142694922 142694950 -19904980 + AT_rich Low_complexity Low_complexity 1 28 0 2006 69 23 101 chrX 142694970 142695309 -19904621 - AluSx SINE Alu 0 315 1 29 47 0 0 chrX 142695318 142695361 -19904569 + AT_rich Low_complexity Low_complexity 1 43 0 1452 123 160 8 chrX 142695403 142695688 -19904242 - AluSg1 SINE Alu 0 322 1 455 218 106 98 chrX 142695714 142695918 -19904012 - MLT1A2 LTR MaLR -1 466 190 786 216 52 79 chrX 142695920 142696159 -19903771 + HAL1 LINE L1 2052 2283 -224 2210 127 0 13 chrX 142696159 142696475 -19903455 + AluSx SINE Alu 1 312 0 786 216 52 79 chrX 142696475 142696526 -19903404 + HAL1 LINE L1 2283 2334 -173 * 1715 225 92 29 chrX 142696519 142696676 -19903254 - L1MEc LINE L1 -3204 3011 2865 2043 103 36 0 chrX 142696676 142696977 -19902953 + L1PA11 LINE L1 5861 6172 -2 1715 225 92 29 chrX 142696977 142697139 -19902791 - L1MEc LINE L1 -3350 2865 2715 2103 92 0 7 chrX 142697139 142697434 -19902496 - AluSg SINE Alu 0 305 13 1715 225 92 29 chrX 142697434 142697744 -19902186 - L1MEc LINE L1 -3500 2715 2340 2001 130 11 0 chrX 142697827 142698103 -19901827 + AluSx SINE Alu 1 279 -33 235 174 0 0 chrX 142698535 142698581 -19901349 - L1MEc LINE L1 -4012 2384 2339 1023 174 0 0 chrX 142698774 142698946 -19900984 + FRAM SINE Alu 1 172 -4 1710 156 0 33 chrX 142698948 142699223 -19900707 + AluJb SINE Alu 1 266 -46 1628 225 111 49 chrX 142699423 142699466 -19900464 - MLT1H1 LTR MaLR 0 555 516 2223 87 0 4 chrX 142699466 142699743 -19900187 + AluSg SINE Alu 1 276 -34 216 0 0 0 chrX 142699744 142699768 -19900162 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1628 225 111 49 chrX 142699768 142700228 -19899702 - MLT1H1 LTR MaLR -38 517 19 751 154 26 0 chrX 142700232 142700349 -19899581 + FLAM_A SINE Alu 1 120 -13 30 45 0 0 chrX 142700357 142700401 -19899529 + AT_rich Low_complexity Low_complexity 1 44 0 972 56 7 14 chrX 142700576 142700718 -19899212 + (TTTC)n Simple_repeat Simple_repeat 3 143 0 2461 178 48 41 chrX 142700729 142701368 -19898562 - L1MC5 LINE L1 -37 7924 7281 2672 64 14 11 chrX 142701368 142701728 -19898202 + L1PA10 LINE L1 5797 6157 -11 2038 190 49 26 chrX 142701770 142702157 -19897773 + MLT1C LTR MaLR 6 406 -61 2353 103 0 0 chrX 142702157 142702469 -19897461 - AluSx SINE Alu 0 312 1 2038 190 49 26 chrX 142702469 142702533 -19897397 + MLT1C LTR MaLR 406 467 0 546 192 79 74 chrX 142702647 142702850 -19897080 - L1MC5 LINE L1 -789 7172 6969 605 180 9 1 chrX 142702853 142702981 -19896949 - L1MC5 LINE L1 -920 6865 6717 436 268 94 35 chrX 142703006 142703181 -19896749 + L2 LINE L2 3045 3241 -72 234 0 0 0 chrX 142703181 142703207 -19896723 + (TTG)n Simple_repeat Simple_repeat 2 27 0 436 268 94 35 chrX 142703207 142703285 -19896645 + L2 LINE L2 3241 3313 0 1846 172 0 0 chrX 142703592 142703882 -19896048 - AluJb SINE Alu -14 298 9 1037 138 0 0 chrX 142703882 142704027 -19895903 - AluJb SINE Alu -166 146 2 410 188 12 0 chrX 142704029 142704109 -19895821 - L1MC5 LINE L1 -177 7784 7704 2233 108 0 0 chrX 142704109 142704397 -19895533 + AluSx SINE Alu 1 288 -24 207 0 0 0 chrX 142704407 142704430 -19895500 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 2650 37 0 0 chrX 142704535 142704832 -19895098 - AluY SINE Alu -14 297 1 2655 199 142 30 chrX 142704834 142705643 -19894287 - L1MC4 LINE L1 0 8042 7143 733 159 26 0 chrX 142705647 142705798 -19894132 + CT-rich Low_complexity Low_complexity 2 156 0 2156 98 24 3 chrX 142705806 142706103 -19893827 - AluSq SINE Alu -10 303 1 2268 231 39 5 chrX 142706104 142706745 -19893185 - L1M4 LINE L1 -3208 2938 2276 255 303 75 27 chrX 142706745 142706933 -19892997 + L1MC4a LINE L1 5864 6060 -1748 28 95 0 0 chrX 142706982 142707066 -19892864 + AT_rich Low_complexity Low_complexity 1 84 0 1917 141 3 33 chrX 142707153 142707457 -19892473 + AluJb SINE Alu 3 297 -15 2184 117 61 24 chrX 142707481 142707857 -19892073 - MLT1B LTR MaLR 0 390 1 740 181 0 8 chrX 142707966 142708093 -19891837 + AluSq/x SINE Alu 4 129 -184 285 314 34 54 chrX 142708101 142708305 -19891625 - MER68 LTR ERV1 -140 422 223 788 300 76 16 chrX 142708787 142709313 -19890617 + L2 LINE L2 2751 3313 0 25 51 0 0 chrX 142709819 142709858 -19890072 + AT_rich Low_complexity Low_complexity 1 39 0 2092 118 13 13 chrX 142709949 142710254 -19889676 - AluSx SINE Alu -7 305 1 2186 104 0 13 chrX 142710346 142710645 -19889285 + AluSc SINE Alu 1 295 -14 433 261 161 0 chrX 142710779 142710940 -19888990 - MIR SINE MIR -2 260 74 1379 98 30 0 chrX 142711224 142711427 -19888503 + L1PA10 LINE L1 5957 6165 -3 2172 126 0 0 chrX 142711555 142711848 -19888082 + AluSg SINE Alu 1 293 -17 2247 109 3 0 chrX 142712318 142712621 -19887309 - AluSx SINE Alu -8 304 1 1781 169 0 30 chrX 142712632 142712928 -19887002 - AluJb SINE Alu -25 287 1 1995 129 7 7 chrX 142713071 142713366 -19886564 - AluSx SINE Alu -17 295 1 1700 239 26 19 chrX 142713612 142714039 -19885891 + LTR16A LTR ERVL 21 450 0 587 161 0 0 chrX 142714041 142714134 -19885796 + HsTC2 DNA Tc2 1803 1895 -3 582 265 112 33 chrX 142714245 142714460 -19885470 + MLT1L LTR MaLR 15 246 -369 488 258 82 38 chrX 142714522 142714765 -19885165 + MLT1K LTR MaLR 336 615 0 2140 68 15 0 chrX 142714864 142715127 -19884803 - AluSq SINE Alu -12 301 35 194 339 54 9 chrX 142715386 142715498 -19884432 + L2 LINE L2 3148 3264 -8 402 261 81 124 chrX 142715875 142715995 -19883935 + MIR SINE MIR 25 132 -130 2340 98 13 0 chrX 142715995 142716301 -19883629 + AluSx SINE Alu 1 310 -2 402 261 81 124 chrX 142716301 142716414 -19883516 + MIR SINE MIR 132 248 -14 2163 202 93 101 chrX 142716456 142716709 -19883221 + L1MC4a LINE L1 6053 6307 -1501 1504 68 117 0 chrX 142716709 142716915 -19883015 - MER30 DNA MER1_type 0 230 1 2163 202 93 101 chrX 142716915 142717491 -19882439 + L1MC4a LINE L1 6307 6875 -933 1109 175 149 30 chrX 142717839 142718108 -19881822 + AluJb SINE Alu 2 302 0 703 238 87 48 chrX 142718450 142718681 -19881249 + MIR SINE MIR 19 258 -4 612 200 15 0 chrX 142718775 142718905 -19881025 - L2 LINE L2 -2 3311 3180 1070 248 31 35 chrX 142718964 142719282 -19880648 + REP3 LTR ERV 36 352 -210 358 241 0 0 chrX 142719303 142719382 -19880548 + MER116 DNA Mariner 1 79 -1 1876 131 7 30 chrX 142719687 142719984 -19879946 - AluJb SINE Alu -22 290 1 2553 58 3 3 chrX 142721368 142721677 -19878253 - AluY SINE Alu -2 309 1 2233 118 3 0 chrX 142721699 142722003 -19877927 - AluSx SINE Alu -7 305 1 2373 74 7 10 chrX 142723236 142723535 -19876395 - AluY SINE Alu -13 298 1 2244 71 11 11 chrX 142723541 142723850 -19876080 - AluSp SINE Alu 0 309 1 941 168 0 12 chrX 142723858 142724019 -19875911 - AluJb SINE Alu -18 294 136 751 157 32 76 chrX 142724316 142724501 -19875429 + MER5B DNA MER1_type 2 178 0 3924 152 97 13 chrX 142724824 142725576 -19874354 + L1MB7 LINE L1 5354 6168 -16 573 91 0 0 chrX 142725980 142726057 -19873873 - AluJ/FRAM SINE Alu -6 306 230 1350 156 72 13 chrX 142726067 142726304 -19873626 + MER106B DNA MER1_type 6 256 -803 263 81 0 0 chrX 142726521 142726558 -19873372 + MADE1 DNA Mariner 1 37 -43 509 253 117 0 chrX 142726944 142727098 -19872832 + MIR SINE MIR 20 191 -71 205 160 0 100 chrX 142728264 142728314 -19871616 + MER5A DNA MER1_type 36 80 -109 293 136 45 0 chrX 142728314 142728358 -19871572 + MLT1E LTR MaLR 1 46 -608 963 206 141 38 chrX 142728411 142728775 -19871155 + MLT1E LTR MaLR 33 496 -97 21 0 0 0 chrX 142728980 142729001 -19870929 + AT_rich Low_complexity Low_complexity 1 21 0 734 119 71 24 chrX 142729009 142729135 -19870795 + FLAM_C SINE Alu 1 132 -1 309 170 0 0 chrX 142729136 142729189 -19870741 + L1MC4 LINE L1 6653 6705 -1337 222 118 0 0 chrX 142729189 142729223 -19870707 + (TA)n Simple_repeat Simple_repeat 2 35 0 245 211 0 0 chrX 142729225 142729277 -19870653 - L1MC4 LINE L1 -1339 6703 6652 1181 116 12 12 chrX 142729299 142729463 -19870467 + AluSc SINE Alu 130 293 -16 199 314 67 9 chrX 142729505 142729610 -19870320 - L2 LINE L2 -213 3059 2949 273 182 18 0 chrX 142729617 142729672 -19870258 + L1MB7 LINE L1 5724 5779 -399 300 179 0 18 chrX 142729676 142729732 -19870198 + Tigger5 DNA MER2_type 1 55 -2268 404 133 160 0 chrX 142729742 142729817 -19870113 + Tigger5 DNA MER2_type 2237 2323 0 1496 177 60 42 chrX 142729819 142730196 -19869734 + L1MB7 LINE L1 5784 6170 -14 234 0 0 0 chrX 142730196 142730222 -19869708 + (GA)n Simple_repeat Simple_repeat 2 27 0 272 259 41 68 chrX 142730229 142730357 -19869573 - L2 LINE L2 -174 3139 3014 553 204 265 7 chrX 142730357 142730504 -19869426 - MER5A DNA MER1_type -4 185 1 272 259 41 68 chrX 142730504 142730522 -19869408 - L2 LINE L2 -299 3014 2997 208 186 47 0 chrX 142730533 142730576 -19869354 + MIR SINE MIR 74 118 -144 26 0 0 0 chrX 142730622 142730648 -19869282 + AT_rich Low_complexity Low_complexity 1 26 0 246 100 50 0 chrX 142730683 142730743 -19869187 + (TA)n Simple_repeat Simple_repeat 2 64 0 338 249 93 47 chrX 142731205 142731383 -19868547 + MIR3 SINE MIR 10 197 -11 350 196 110 37 chrX 142731870 142732033 -19867897 + Charlie7 DNA MER1_type 2438 2612 0 2093 129 7 0 chrX 142732763 142733065 -19866865 + AluSx SINE Alu 1 304 -8 678 262 66 6 chrX 142733585 142733768 -19866162 + MIR SINE MIR 28 221 -41 445 236 0 0 chrX 142733905 142734015 -19865915 + L1 LINE L1 2864 2973 -3173 716 259 116 9 chrX 142734083 142734307 -19865623 - MIR SINE MIR -13 249 2 210 171 0 0 chrX 142734756 142734797 -19865133 + (TA)n Simple_repeat Simple_repeat 2 42 0 681 293 74 14 chrX 142735484 142735781 -19864149 + L1ME LINE L1 4741 5055 -1091 710 280 120 48 chrX 142735892 142736232 -19863698 + L1ME LINE L1 5311 5696 -425 673 135 63 9 chrX 142736232 142736343 -19863587 + FLAM_C SINE Alu 1 117 -16 710 280 120 48 chrX 142736343 142736477 -19863453 + L1ME LINE L1 5696 5819 -302 879 145 0 0 chrX 142737194 142737311 -19862619 - FLAM_C SINE Alu -15 118 2 755 192 181 0 chrX 142738578 142738755 -19861175 - MER3 DNA MER1_type 0 209 1 2223 119 3 3 chrX 142738846 142739157 -19860773 + AluJb SINE Alu 2 312 0 504 0 0 0 chrX 142739638 142739694 -19860236 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 252 184 0 0 chrX 142739701 142739750 -19860180 + (CAGAGA)n Simple_repeat Simple_repeat 4 52 0 1117 188 31 62 chrX 142739918 142740242 -19859688 + L1MA9 LINE L1 5987 6300 -12 243 61 0 0 chrX 142740369 142740402 -19859528 + (CA)n Simple_repeat Simple_repeat 2 34 0 228 35 0 0 chrX 142740404 142740433 -19859497 + (TG)n Simple_repeat Simple_repeat 2 30 0 1678 143 44 48 chrX 142740451 142740745 -19859185 + AluJo SINE Alu 1 293 -19 344 221 63 0 chrX 142740942 142741041 -19858889 + MIR SINE MIR 37 150 -62 226 0 0 56 chrX 142741249 142741285 -19858645 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1638 193 20 10 chrX 142741294 142741621 -19858309 + AluJo SINE Alu 1 330 0 2255 102 0 0 chrX 142741630 142741925 -19858005 + AluSq SINE Alu 1 295 -18 806 154 39 8 chrX 142742005 142742135 -19857795 - AluJo SINE Alu -178 134 1 556 214 64 40 chrX 142742195 142742368 -19857562 + MER104 DNA MER2_type 1 177 -3 1612 153 29 49 chrX 142742556 142742863 -19857067 - AluJo SINE Alu -11 301 1 1792 174 0 7 chrX 142743224 142743518 -19856412 + AluJo SINE Alu 1 292 -20 800 182 0 0 chrX 142743540 142743661 -19856269 - FLAM_C SINE Alu -12 131 11 329 262 19 0 chrX 142743725 142743828 -19856102 + L1MB7 LINE L1 6080 6184 0 2233 102 0 0 chrX 142743839 142744184 -19855746 + AluSx SINE Alu 1 345 0 252 0 0 0 chrX 142744708 142744736 -19855194 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 348 154 0 0 chrX 142745347 142745399 -19854531 + MER41E LTR ERV1 313 364 -148 523 319 67 8 chrX 142745472 142745726 -19854204 + MARNA DNA Mariner 278 546 -40 1193 195 9 0 chrX 142746097 142746307 -19853623 + AluJo SINE Alu 78 289 -23 672 265 124 71 chrX 142746425 142746529 -19853401 + L1MC4a LINE L1 5414 5511 -2297 1481 116 204 20 chrX 142746529 142746779 -19853151 + AluJb SINE Alu 3 298 -4 672 265 124 71 chrX 142746779 142747085 -19852845 + L1MC4a LINE L1 5511 5846 -1962 27 62 0 0 chrX 142747252 142747300 -19852630 + AT_rich Low_complexity Low_complexity 1 48 0 289 265 64 88 chrX 142747950 142748010 -19851920 + L1MC5 LINE L1 7636 7696 -265 2191 121 0 6 chrX 142748010 142748323 -19851607 + AluSx SINE Alu 1 311 -1 2326 88 0 25 chrX 142748325 142748642 -19851288 + AluSq SINE Alu 1 309 -4 289 265 64 88 chrX 142748642 142748861 -19851069 + L1MC5 LINE L1 7697 7911 -50 1751 167 0 20 chrX 142748931 142749257 -19850673 + AluJo SINE Alu 6 312 0 2106 120 7 0 chrX 142749269 142749568 -19850362 + AluSx SINE Alu 9 309 -3 26 0 0 0 chrX 142750252 142750278 -19849652 + AT_rich Low_complexity Low_complexity 1 26 0 1033 101 0 0 chrX 142750285 142750414 -19849516 - FLAM_C SINE Alu -4 129 1 21 89 0 0 chrX 142750425 142750481 -19849449 + AT_rich Low_complexity Low_complexity 1 56 0 272 264 0 28 chrX 142752032 142752104 -19847826 + L1MC5 LINE L1 7812 7881 -80 989 114 0 0 chrX 142752142 142752273 -19847657 + FLAM_C SINE Alu 1 131 -2 2183 102 3 13 chrX 142752423 142752728 -19847202 - AluSx SINE Alu -8 304 3 1085 58 0 22 chrX 142752729 142752867 -19847063 - AluY SINE Alu -176 135 1 228 345 182 0 chrX 142752933 142753043 -19846887 - L2 LINE L2 -14 3258 3129 2204 110 0 19 chrX 142753088 142753396 -19846534 + AluSx SINE Alu 1 302 -10 2303 87 0 23 chrX 142753848 142754158 -19845772 + AluSx SINE Alu 1 303 -9 1458 182 51 75 chrX 142754565 142754760 -19845170 - MLT1A2 LTR MaLR -9 365 182 2299 106 0 0 chrX 142754760 142755062 -19844868 - AluSg SINE Alu -8 302 1 1458 182 51 75 chrX 142755062 142755240 -19844690 - MLT1A2 LTR MaLR -192 182 1 26 0 0 0 chrX 142755703 142755729 -19844201 + AT_rich Low_complexity Low_complexity 1 26 0 2063 101 65 0 chrX 142755997 142756273 -19843657 + AluSq SINE Alu 1 294 -19 2012 133 30 0 chrX 142756333 142756633 -19843297 + AluSc SINE Alu 1 309 0 291 216 130 111 chrX 142758031 142758193 -19841737 + MIR SINE MIR 85 249 -13 385 204 88 17 chrX 142758220 142758383 -19841547 + MIR SINE MIR 8 235 -27 1843 108 0 117 chrX 142758582 142758718 -19841212 + AluJb SINE Alu 1 78 -234 2333 77 0 3 chrX 142758718 142759028 -19840902 + AluSq SINE Alu 1 309 0 1843 108 0 117 chrX 142759028 142759223 -19840707 + AluJb SINE Alu 78 294 -18 496 290 23 17 chrX 142759352 142759528 -19840402 + MIR SINE MIR 30 206 -56 378 289 83 22 chrX 142759583 142759763 -19840167 - MIR SINE MIR -56 206 16 386 306 169 0 chrX 142759833 142759957 -19839973 - L2 LINE L2 0 3313 3169 187 288 81 36 chrX 142760222 142760333 -19839597 + MIR SINE MIR 77 192 -70 237 89 18 54 chrX 142761047 142761126 -19838804 + (CCCCG)n Simple_repeat Simple_repeat 1 76 0 2325 96 0 0 chrX 142761551 142761863 -19838067 + AluSx SINE Alu 1 312 0 212 280 0 0 chrX 142762139 142762189 -19837741 + L2 LINE L2 3194 3243 -29 324 233 0 0 chrX 142762245 142762305 -19837625 + MIR SINE MIR 92 151 -111 1297 148 9 5 chrX 142762305 142762515 -19837415 + AluJb SINE Alu 87 297 -15 253 376 17 0 chrX 142762523 142762640 -19837290 + MIR SINE MIR 143 261 -1 537 287 99 16 chrX 142762712 142762929 -19837001 + MIR SINE MIR 3 230 -32 2151 121 3 3 chrX 142763006 142763304 -19836626 - AluSx SINE Alu -14 298 1 789 152 8 0 chrX 142763319 142763444 -19836486 - L1ME LINE L1 -400 5770 5645 2913 202 34 6 chrX 142763449 142764074 -19835856 + MER97a DNA MER1_type? 253 894 0 2283 112 0 0 chrX 142764164 142764459 -19835471 - AluSx SINE Alu -17 295 1 2551 46 0 16 chrX 142764733 142765040 -19834890 - AluY SINE Alu -9 302 1 2338 106 0 0 chrX 142765117 142765420 -19834510 - AluSg SINE Alu -7 303 1 1932 137 60 107 chrX 142765421 142765853 -19834077 + MLT2D LTR ERVL 3 414 0 2318 82 0 7 chrX 142766115 142766421 -19833509 + AluSg SINE Alu 1 304 -6 841 159 16 0 chrX 142766686 142766812 -19833118 + FLAM_C SINE Alu 1 128 -5 2271 122 6 0 chrX 142766831 142767142 -19832788 + AluSq SINE Alu 1 313 0 1796 156 24 3 chrX 142767684 142767972 -19831958 + AluJo SINE Alu 1 294 -18 395 345 140 12 chrX 142768192 142768592 -19831338 + L2 LINE L2 855 1305 -2009 1224 140 198 29 chrX 142768666 142768909 -19831021 - AluJo SINE Alu -16 286 3 688 204 6 6 chrX 142768921 142769088 -19830842 + CT-rich Low_complexity Low_complexity 1 167 0 1107 142 12 0 chrX 142769089 142769251 -19830679 - AluJo SINE Alu -20 292 129 357 87 0 0 chrX 142769269 142769315 -19830615 + AluSp SINE Alu 1 46 -253 1680 55 5 5 chrX 142769315 142769516 -19830414 + AluSp SINE Alu 94 294 -19 806 124 0 0 chrX 142769516 142769621 -19830309 - AluJo SINE Alu -191 121 17 523 316 101 51 chrX 142769662 142770348 -19829582 + L2 LINE L2 1356 2075 -1239 2242 111 0 3 chrX 142770423 142770730 -19829200 + AluSx SINE Alu 1 306 -6 1377 162 41 26 chrX 142770751 142771017 -19828913 - L1MC4a LINE L1 -413 7395 7126 2167 110 0 29 chrX 142771055 142771364 -19828566 + AluSx SINE Alu 1 300 -12 182 36 0 36 chrX 142771603 142771631 -19828299 + (TTTTTA)n Simple_repeat Simple_repeat 3 29 0 647 77 145 8 chrX 142771739 142771856 -19828074 - L1MA7 LINE L1 0 6291 6159 518 193 33 20 chrX 142771856 142771987 -19827943 - L1MC4a LINE L1 -668 7140 7005 2059 106 0 7 chrX 142771987 142772270 -19827660 - AluSg SINE Alu -9 301 21 518 193 33 20 chrX 142772270 142772288 -19827642 - L1MC4a LINE L1 -803 7005 6989 1094 61 0 0 chrX 142772289 142772421 -19827509 - AluY SINE Alu -179 132 1 1404 200 3 10 chrX 142772427 142772717 -19827213 - L1MC4 LINE L1 -949 7093 6806 192 40 0 0 chrX 142772719 142772744 -19827186 + (TTG)n Simple_repeat Simple_repeat 2 26 0 366 115 0 49 chrX 142772918 142772979 -19826951 - L1MC3 LINE L1 -1019 6766 6709 2521 37 0 10 chrX 142773010 142773304 -19826626 - AluY SINE Alu -20 291 1 331 158 0 0 chrX 142773582 142773639 -19826291 + L1MA4 LINE L1 6181 6237 -63 2144 75 18 7 chrX 142773639 142773917 -19826013 + AluSq SINE Alu 1 281 -32 277 42 21 21 chrX 142773917 142773965 -19825965 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 2015 148 3 0 chrX 142774015 142774312 -19825618 + AluJo SINE Alu 1 298 -14 1608 150 21 42 chrX 142774370 142774656 -19825274 + AluJo SINE Alu 1 280 -32 822 155 8 0 chrX 142774685 142774814 -19825116 - FLAM_A SINE Alu 0 133 4 40 0 0 0 chrX 142774936 142774976 -19824954 + AT_rich Low_complexity Low_complexity 1 40 0 429 218 40 10 chrX 142775275 142775376 -19824554 + MER21B LTR ERV1 6 109 -754 2052 109 14 0 chrX 142775398 142775682 -19824248 - AluSx SINE Alu -24 288 1 568 157 69 0 chrX 142775715 142775817 -19824113 + MER21B LTR ERV1 101 209 -654 2341 174 116 23 chrX 142775844 142776368 -19823562 + MER21B LTR ERV1 290 862 -1 2157 114 3 0 chrX 142776496 142776785 -19823145 + AluSx SINE Alu 1 290 -22 273 89 0 0 chrX 142776829 142776874 -19823056 + (GA)n Simple_repeat Simple_repeat 2 46 0 1760 144 3 38 chrX 142776874 142777166 -19822764 - AluJo SINE Alu -30 282 1 1091 197 19 38 chrX 142777668 142777881 -19822049 - MER3 DNA MER1_type 0 209 1 1329 154 10 0 chrX 142778223 142778444 -19821486 - AluJb SINE Alu 0 304 82 286 230 40 0 chrX 142778867 142778941 -19820989 - LTR16A1 LTR ERVL -380 77 1 2202 106 0 0 chrX 142779120 142779428 -19820502 - AluSq SINE Alu 0 308 1 2172 123 0 0 chrX 142779454 142779747 -19820183 + AluSx SINE Alu 1 293 -19 2380 96 0 0 chrX 142779881 142780182 -19819748 - AluSx SINE Alu -11 301 1 482 194 50 101 chrX 142780526 142780804 -19819126 + L1MC5 LINE L1 7603 7866 -95 * 555 230 6 73 chrX 142780801 142780874 -19819056 + L1ME4a LINE L1 5552 5628 -493 2263 105 0 0 chrX 142780874 142781178 -19818752 + AluSx SINE Alu 1 304 -8 555 230 6 73 chrX 142781178 142781282 -19818648 + L1ME4a LINE L1 5628 5717 -404 1857 154 0 0 chrX 142781712 142781991 -19817939 + AluJb SINE Alu 2 280 -32 189 0 0 0 chrX 142781991 142782012 -19817918 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2293 197 34 28 chrX 142782035 142782567 -19817363 - L1MC4 LINE L1 -25 8017 7483 586 203 108 70 chrX 142782564 142782749 -19817181 + L1ME4a LINE L1 5703 5895 -226 * 22 0 0 0 chrX 142782838 142782860 -19817070 + AT_rich Low_complexity Low_complexity 1 22 0 299 299 14 56 chrX 142783106 142783250 -19816680 - MIR SINE MIR -111 151 14 225 183 0 83 chrX 142783260 142783320 -19816610 + L3 LINE CR1 1296 1350 -227 1397 176 9 91 chrX 142783324 142783643 -19816287 - AluJo SINE Alu -19 293 1 243 125 0 0 chrX 142783643 142783683 -19816247 - Alu SINE Alu -167 135 96 891 132 0 8 chrX 142783683 142783812 -19816118 - AluJo SINE Alu -169 143 16 225 291 47 23 chrX 142783844 142783930 -19816000 + L3 LINE CR1 1421 1508 -69 292 236 88 116 chrX 142784542 142784561 -19815369 - L2 LINE L2 -1359 1955 1937 1847 156 3 48 chrX 142784561 142784709 -19815221 + AluJo SINE Alu 1 129 -183 2272 99 0 3 chrX 142784709 142785001 -19814929 + AluSg SINE Alu 1 291 -19 1847 156 3 48 chrX 142785001 142785166 -19814764 + AluJo SINE Alu 129 300 -12 292 236 88 116 chrX 142785166 142785362 -19814568 - L2 LINE L2 -1377 1937 1746 186 254 55 0 chrX 142785453 142785508 -19814422 - MIR SINE MIR -69 193 136 1737 101 85 0 chrX 142785539 142785787 -19814143 - AluSx SINE Alu -43 269 1 338 173 40 0 chrX 142785788 142785863 -19814067 - L1MC5 LINE L1 -177 7784 7707 2627 191 135 43 chrX 142785966 142786759 -19813171 - L1MD3 LINE L1 -5 8037 7182 225 355 182 0 chrX 142786788 142786898 -19813032 - MIR SINE MIR -114 148 19 2315 92 3 0 chrX 142787142 142787446 -19812484 + AluSq SINE Alu 1 305 -8 1753 132 20 54 chrX 142789349 142789645 -19810285 - AluJb SINE Alu -14 298 13 403 176 86 0 chrX 142789649 142789743 -19810187 + L1MC4a LINE L1 5566 5664 -463 281 229 121 43 chrX 142789779 142789919 -19810011 + L1MC4a LINE L1 5779 5929 -1879 1620 187 31 19 chrX 142790131 142790163 -19809767 - L1MB7 LINE L1 -19 6165 6135 2033 82 3 28 chrX 142790163 142790482 -19809448 + AluSp SINE Alu 2 313 0 1620 187 31 19 chrX 142790482 142790807 -19809123 - L1MB7 LINE L1 -49 6135 5803 204 135 0 0 chrX 142793059 142793096 -19806834 + (A)n Simple_repeat Simple_repeat 1 37 0 403 238 92 69 chrX 142796536 142796797 -19803133 - L1MC5 LINE L1 -446 7515 7249 * 407 277 12 24 chrX 142796779 142796945 -19802985 - L1MC4 LINE L1 -612 7430 7267 1843 59 0 4 chrX 142797075 142797313 -19802617 - L1PA5 LINE L1 0 6154 5918 727 229 113 40 chrX 142797695 142798092 -19801838 + L1MC5 LINE L1 7265 7690 -271 265 313 104 37 chrX 142798369 142798532 -19801398 - L2 LINE L2 -36 3277 3104 402 264 60 35 chrX 142798853 142798978 -19800952 + L1ME4a LINE L1 5699 5833 -288 1715 156 33 0 chrX 142798978 142799286 -19800644 + AluJb SINE Alu 1 317 0 402 264 60 35 chrX 142799286 142799360 -19800570 + L1ME4a LINE L1 5833 5904 -217 299 85 0 0 chrX 142799387 142799434 -19800496 - MER41B LTR ERV1 -107 528 482 21 71 0 0 chrX 142799596 142799638 -19800292 + AT_rich Low_complexity Low_complexity 1 42 0 302 263 76 25 chrX 142799985 142800103 -19799827 + MLT1J LTR MaLR 357 480 -31 279 273 74 0 chrX 142800169 142800290 -19799640 - L1M4 LINE L1 -1529 4617 4488 2030 131 0 3 chrX 142800306 142800589 -19799341 + AluJb SINE Alu 1 282 -30 1405 178 36 16 chrX 142800864 142801168 -19798762 - AluJo SINE Alu -2 310 1 807 158 15 0 chrX 142801168 142801301 -19798629 - AluJo SINE Alu -177 135 1 246 270 45 11 chrX 142801301 142801390 -19798540 - L1M4 LINE L1 -1986 4160 4069 452 274 21 70 chrX 142801407 142801593 -19798337 + MER5B DNA MER1_type 2 178 0 228 253 39 84 chrX 142801655 142801809 -19798121 - L1M4 LINE L1 -2172 3974 3828 758 171 0 34 chrX 142801813 142801959 -19797971 - FLAM_C SINE Alu -2 141 1 356 261 43 89 chrX 142801989 142802051 -19797879 - L1M4 LINE L1 -2380 3766 3703 1715 165 10 29 chrX 142802051 142802360 -19797570 + AluJo SINE Alu 1 303 -9 356 261 43 89 chrX 142802360 142802554 -19797376 - L1M4 LINE L1 -2443 3703 3522 529 269 47 118 chrX 142802937 142803322 -19796608 + L2 LINE L2 2569 3176 -96 2441 77 3 0 chrX 142803322 142803622 -19796308 - AluSq SINE Alu -12 301 1 529 269 47 118 chrX 142803622 142803713 -19796217 + L2 LINE L2 3176 3272 0 356 162 316 17 chrX 142804556 142804673 -19795257 + MER103 DNA DNA 2 153 -13 2198 114 20 0 chrX 142804946 142805252 -19794678 + AluSx SINE Alu 1 312 0 435 265 74 35 chrX 142805265 142805522 -19794408 + L1MC5 LINE L1 7672 7938 -23 26 0 0 0 chrX 142805643 142805669 -19794261 + AT_rich Low_complexity Low_complexity 1 26 0 211 291 159 26 chrX 142806508 142806659 -19793271 + MER5B DNA MER1_type 8 178 0 958 212 9 24 chrX 142808041 142808253 -19791677 - MER3 DNA MER1_type 0 209 1 2343 79 0 3 chrX 142809167 142809457 -19790473 + AluSg SINE Alu 1 289 -21 25 114 0 0 chrX 142809633 142809756 -19790174 + AT_rich Low_complexity Low_complexity 1 123 0 2178 115 3 0 chrX 142809947 142810243 -19789687 + AluSx SINE Alu 1 297 -15 1719 116 0 12 chrX 142810292 142810572 -19789358 + AluSx SINE Alu 45 321 0 231 305 102 6 chrX 142810643 142810810 -19789120 + L1MC/D LINE L1 5298 5480 -2328 4377 120 52 17 chrX 142810821 142811539 -19788391 + L1PA16 LINE L1 5423 6165 -1 570 279 166 17 chrX 142811767 142812181 -19787749 + L1MC/D LINE L1 4729 5080 -1419 2164 104 7 3 chrX 142812181 142812478 -19787452 + AluSq SINE Alu 1 298 -15 570 279 166 17 chrX 142812478 142812954 -19786976 + L1MC/D LINE L1 5080 5756 -743 2237 85 20 10 chrX 142812968 142813262 -19786668 + AluSx SINE Alu 3 299 -13 478 242 34 4 chrX 142813414 142813568 -19786362 + MIR SINE MIR 46 259 -3 494 225 162 15 chrX 142813603 142813825 -19786105 - L1MC4a LINE L1 -224 5897 5671 542 218 60 139 chrX 142813885 142814151 -19785779 - MIR SINE MIR 0 262 18 358 278 74 0 chrX 142814802 142814910 -19785020 + MIR SINE MIR 68 183 -79 456 67 0 0 chrX 142815073 142815133 -19784797 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 28 29 0 0 chrX 142815312 142815347 -19784583 + AT_rich Low_complexity Low_complexity 1 35 0 204 200 0 0 chrX 142815371 142815416 -19784514 + (CATA)n Simple_repeat Simple_repeat 2 46 0 275 171 26 40 chrX 142815471 142815547 -19784383 + L1MC5 LINE L1 7742 7816 -145 2100 101 42 0 chrX 142815688 142815976 -19783954 + AluSx SINE Alu 1 300 -12 15844 110 21 8 chrX 142816154 142818541 -19781389 - Tigger1 DNA MER2_type 0 2418 1 719 268 22 56 chrX 142818546 142818777 -19781153 - MIR SINE MIR -38 224 2 2155 100 0 0 chrX 142818894 142819223 -19780707 + AluSg SINE Alu 1 329 0 684 163 76 35 chrX 142819518 142819690 -19780240 - L1MC4 LINE L1 -6 8036 7858 691 299 147 28 chrX 142820118 142820580 -19779350 + L2 LINE L2 859 1375 -1939 198 0 0 0 chrX 142820772 142820794 -19779136 + (A)n Simple_repeat Simple_repeat 1 22 0 1850 145 7 26 chrX 142820800 142821110 -19778820 + AluJb SINE Alu 1 304 -8 2456 137 29 22 chrX 142821114 142821475 -19778455 + L1MC1 LINE L1 5871 6237 -96 444 51 0 0 chrX 142821475 142821534 -19778396 + (TG)n Simple_repeat Simple_repeat 2 60 0 2456 137 29 22 chrX 142821534 142821626 -19778304 + L1MC1 LINE L1 6237 6327 -6 873 149 26 77 chrX 142821665 142821859 -19778071 - L1MC1 LINE L1 -78 6255 6072 1638 323 72 21 chrX 142821871 142822716 -19777214 + L2 LINE L2 1805 2692 -622 1853 156 11 0 chrX 142822793 142823069 -19776861 - AluJo SINE Alu -30 282 4 358 404 113 18 chrX 142823092 142823419 -19776511 + L2 LINE L2 2883 3240 -32 2240 102 0 3 chrX 142823518 142823811 -19776119 - AluSx SINE Alu -15 297 6 854 73 16 24 chrX 142824990 142825113 -19774817 + L1MA1 LINE L1 6181 6302 0 21 57 0 0 chrX 142825830 142825865 -19774065 + AT_rich Low_complexity Low_complexity 1 35 0 2373 88 16 0 chrX 142826031 142826338 -19773592 + AluSx SINE Alu 1 312 0 2488 62 3 0 chrX 142826345 142826650 -19773280 + AluY SINE Alu 1 306 -5 2179 137 0 0 chrX 142826752 142827051 -19772879 + AluSg SINE Alu 1 299 -11 2187 101 10 10 chrX 142828085 142828382 -19771548 + AluSg SINE Alu 2 298 -12 691 242 158 55 chrX 142829677 142829912 -19770018 + L1ME4a LINE L1 5515 5724 -397 2317 110 3 0 chrX 142829912 142830222 -19769708 + AluSp SINE Alu 3 313 0 691 242 158 55 chrX 142830222 142830532 -19769398 + L1ME4a LINE L1 5724 6116 -5 277 218 50 79 chrX 142831697 142831798 -19768132 + Charlie8 DNA MER1_type 218 315 -2102 354 184 43 17 chrX 142834279 142834417 -19765513 + MER58B DNA MER1_type 167 341 0 2390 63 0 23 chrX 142834468 142834770 -19765160 + AluSc SINE Alu 1 295 -14 200 258 65 0 chrX 142835040 142835102 -19764828 + L2 LINE L2 1978 2043 -1271 188 350 50 0 chrX 142835218 142835298 -19764632 + L2 LINE L2 3230 3313 0 207 314 141 41 chrX 142835697 142835818 -19764112 - L2 LINE L2 -11 3261 3129 2538 68 0 0 chrX 142836234 142836543 -19763387 + AluY SINE Alu 1 309 -2 753 274 57 8 chrX 142837354 142837599 -19762331 + MIR SINE MIR 3 259 -3 367 318 60 81 chrX 142837662 142837931 -19761999 + L3b LINE CR1 1205 1465 -118 1504 181 18 18 chrX 142837931 142838212 -19761718 - AluJo SINE Alu -19 293 13 367 318 60 81 chrX 142838212 142838323 -19761607 + L3b LINE CR1 1465 1577 -6 1854 103 8 4 chrX 142838362 142838623 -19761307 + AluSq SINE Alu 46 307 -6 2234 98 14 0 chrX 142839393 142839688 -19760242 + AluSq SINE Alu 1 299 -14 1875 125 14 34 chrX 142840041 142840336 -19759594 + AluSx SINE Alu 15 303 -9 845 289 33 25 chrX 142840349 142840591 -19759339 - MIR SINE MIR -8 254 11 2235 64 50 0 chrX 142840750 142841033 -19758897 + AluYa5 SINE Alu 1 297 -14 2269 119 3 0 chrX 142841441 142841753 -19758177 + AluSq SINE Alu 1 313 0 1099 74 27 0 chrX 142842271 142842420 -19757510 + BC200 scRNA scRNA 2 154 -46 536 245 43 25 chrX 142848370 142848533 -19751397 + MIR SINE MIR 89 254 -8 881 247 31 5 chrX 142848625 142848848 -19751082 + MIR SINE MIR 34 262 0 219 283 169 36 chrX 142849404 142849570 -19750360 - L2 LINE L2 0 3313 3126 276 351 70 70 chrX 142849589 142849774 -19750156 - L2 LINE L2 -13 3259 3075 352 298 12 0 chrX 142850331 142850415 -19749515 - L2 LINE L2 -2 3270 3186 409 139 0 0 chrX 142850423 142850495 -19749435 + L1MA9 LINE L1 6236 6307 -5 202 322 84 79 chrX 142850496 142850710 -19749220 - L2 LINE L2 -62 3210 2996 1308 136 28 33 chrX 142850812 142851026 -19748904 - AluJb SINE Alu -18 294 82 234 276 53 26 chrX 142851235 142851311 -19748619 - MER5A DNA MER1_type 0 189 112 202 286 0 0 chrX 142851597 142851646 -19748284 - L2 LINE L2 0 3313 3265 289 324 18 9 chrX 142851887 142851998 -19747932 + MIR SINE MIR 34 145 -63 2355 109 0 0 chrX 142852211 142852515 -19747415 - AluSq SINE Alu -5 308 5 768 302 38 8 chrX 142852841 142853076 -19746854 - MIR SINE MIR -19 243 2 637 219 16 49 chrX 142853076 142853234 -19746696 + L2 LINE L2 3153 3304 -9 307 268 51 51 chrX 142853312 142853450 -19746480 + MER5A DNA MER1_type 52 189 0 415 281 141 0 chrX 142853837 142853972 -19745958 + MIR SINE MIR 104 257 -5 237 33 0 0 chrX 142854103 142854133 -19745797 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2190 106 0 3 chrX 142854135 142854428 -19745502 - AluSg SINE Alu -18 292 1 495 305 100 78 chrX 142854441 142854762 -19745168 + L2 LINE L2 2935 3262 -10 306 234 16 0 chrX 142855133 142855197 -19744733 + L2 LINE L2 3249 3313 0 425 310 63 13 chrX 142855227 142855385 -19744545 + MIR3 SINE MIR 30 195 -13 2374 83 0 3 chrX 142855396 142855696 -19744234 - AluSq SINE Alu -14 299 1 207 349 75 28 chrX 142855722 142855828 -19744102 + L2 LINE L2 3143 3253 -19 968 286 68 61 chrX 142856110 142856504 -19743426 + L2 LINE L2 2134 2535 -779 2178 107 13 25 chrX 142856504 142856821 -19743109 - AluSq SINE Alu 0 313 1 968 286 68 61 chrX 142856821 142856968 -19742962 + L2 LINE L2 2535 2679 -635 501 216 99 37 chrX 142856990 142857152 -19742778 - L2 LINE L2 0 3313 3142 302 282 47 0 chrX 142857274 142857359 -19742571 - MER81 DNA DNA 0 114 26 2227 109 0 0 chrX 142857517 142857819 -19742111 - AluSx SINE Alu -10 302 1 6997 220 42 42 chrX 142859252 142859832 -19740098 - L1 LINE L1 -1120 5026 4447 932 182 0 38 chrX 142859832 142859858 -19740072 - AluJo SINE Alu -159 153 128 2099 115 28 0 chrX 142859858 142860144 -19739786 - AluSx SINE Alu -16 296 3 932 182 0 38 chrX 142860144 142860276 -19739654 - AluJo SINE Alu -184 128 1 6997 220 42 42 chrX 142860276 142861219 -19738711 - L1 LINE L1 -1699 4447 3505 2402 77 10 0 chrX 142861219 142861519 -19738411 - AluSp SINE Alu -10 303 1 6997 220 42 42 chrX 142861519 142862464 -19737466 - L1 LINE L1 -2641 3505 2557 2009 132 0 3 chrX 142862464 142862753 -19737177 - AluSx SINE Alu -24 288 1 6997 220 42 42 chrX 142862753 142863076 -19736854 - L1 LINE L1 -3589 2557 2235 569 160 17 0 chrX 142863100 142863219 -19736711 + L1MB1 LINE L1 3665 3785 -2361 19279 149 33 12 chrX 142863227 142868899 -19731031 + L1MA1 LINE L1 17 5899 -1822 2323 105 7 0 chrX 142868899 142869204 -19730726 + AluSx SINE Alu 1 307 -5 19279 149 33 12 chrX 142869204 142871067 -19728863 + L1MA1 LINE L1 5899 7721 0 3388 198 86 14 chrX 142871095 142871657 -19728273 + L1MB1 LINE L1 3775 4422 -1724 2431 92 0 0 chrX 142871657 142871962 -19727968 + AluSq SINE Alu 1 305 -8 3388 198 86 14 chrX 142871962 142872264 -19727666 + L1MB1 LINE L1 4422 4701 -1445 2237 163 24 98 chrX 142872246 142872950 -19726980 + L1MB1 LINE L1 5184 5834 -334 * 1060 112 11 22 chrX 142872950 142873125 -19726805 + L1MA6 LINE L1 6119 6295 -5 577 220 32 5 chrX 142873143 142873329 -19726601 + L1MDa LINE L1 2320 2510 -4030 298 262 47 13 chrX 142873360 142873509 -19726421 + L1M4 LINE L1 55 208 -6334 4971 40 0 0 chrX 142873516 142874149 -19725781 + L1P LINE L1 3766 4398 -1748 336 172 17 0 chrX 142874230 142874288 -19725642 + HUERS-P3b LTR ERV1 38 96 -7322 770 188 0 8 chrX 142874288 142874421 -19725509 + HUERS-P3b LTR ERV1 251 382 -7036 7833 51 6 0 chrX 142874422 142876183 -19723747 + L1PA6 LINE L1 4386 6151 -3 940 293 77 38 chrX 142876226 142876749 -19723181 + L1M4 LINE L1 216 758 -5784 1869 188 3 0 chrX 142876775 142877134 -19722796 - AluJb SINE Alu 0 312 3 1880 163 13 3 chrX 142877152 142877459 -19722471 - AluJb SINE Alu -2 310 1 216 238 0 0 chrX 142877479 142877542 -19722388 + CT-rich Low_complexity Low_complexity 2 64 0 3045 203 54 23 chrX 142877548 142878538 -19721392 + L1M4 LINE L1 828 1851 -4795 1923 139 62 0 chrX 142878545 142878833 -19721097 + AluJb SINE Alu 1 306 -6 726 227 13 0 chrX 142878834 142879060 -19720870 + L1M4 LINE L1 5229 5457 -717 315 221 151 0 chrX 143079136 143079222 -19520708 - L1MC4 LINE L1 -1330 6712 6614 1987 135 47 29 chrX 143079227 143079568 -19520362 + MER7A DNA MER2_type 2 346 0 217 317 0 0 chrX 143079568 143079628 -19520302 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 975 171 76 5 chrX 143081018 143081229 -19518701 - L1MD1 LINE L1 -10 6232 6007 2224 106 0 0 chrX 143081808 143082151 -19517779 + AluSx SINE Alu 1 343 0 228 163 0 0 chrX 143082612 143082655 -19517275 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 767 243 129 46 chrX 143083396 143083746 -19516184 - MLT1J2 LTR MaLR -7 443 65 2204 88 122 11 chrX 143084082 143084261 -19515669 + L1MA9 LINE L1 5892 6050 -262 2195 111 20 0 chrX 143084261 143084558 -19515372 + AluSx SINE Alu 1 303 -9 2204 88 122 11 chrX 143084558 143084608 -19515322 + L1MA9 LINE L1 6050 6093 -219 189 0 0 0 chrX 143084608 143084629 -19515301 + (CA)n Simple_repeat Simple_repeat 2 22 0 2204 88 122 11 chrX 143084629 143084774 -19515156 + L1MA9 LINE L1 6093 6309 -3 779 225 105 9 chrX 143085266 143085591 -19514339 + L1ME4a LINE L1 5748 6103 -18 404 305 89 16 chrX 143085945 143086135 -19513795 + MIR SINE MIR 4 207 -55 2764 84 0 3 chrX 143087659 143088015 -19511915 - THE1A LTR MaLR 0 355 1 682 153 244 0 chrX 143088418 143088549 -19511381 - AluJo SINE Alu -2 300 138 2189 139 14 6 chrX 143088549 143088901 -19511029 - THE1A LTR MaLR 0 355 1 11920 90 7 2 chrX 143088901 143090474 -19509456 - THE1A-int LTR MaLR 0 1580 1 2299 122 11 8 chrX 143090474 143090828 -19509102 - THE1A LTR MaLR 0 355 1 1304 168 24 8 chrX 143090828 143091078 -19508852 - THE1A LTR MaLR -98 257 4 811 154 0 29 chrX 143091090 143091226 -19508704 - AluJo SINE Alu -170 132 1 274 342 42 8 chrX 143091630 143091750 -19508180 + MIR SINE MIR 28 151 -111 695 279 157 9 chrX 143093113 143093457 -19506473 - MLT1J1 LTR MaLR -7 439 45 337 314 105 0 chrX 143093524 143093801 -19506129 - L1ME4a LINE L1 -201 5920 5615 7258 198 41 48 chrX 143094044 143094595 -19505335 + L1MC4a LINE L1 5759 6313 -1495 1377 242 57 64 chrX 143094595 143095141 -19504789 + MLT1F LTR MaLR 1 542 0 7258 198 41 48 chrX 143095141 143096621 -19503309 + L1MC4a LINE L1 6313 7775 -33 360 253 45 109 chrX 143097380 143097560 -19502370 - HAL1b LINE L1 -36 1312 1147 983 8 0 25 chrX 143097560 143097680 -19502250 + L1PA8 LINE L1 6055 6171 -1 360 253 45 109 chrX 143097680 143097720 -19502210 - HAL1b LINE L1 -201 1147 1106 311 265 8 34 chrX 143097743 143097860 -19502070 - HAL1b LINE L1 -332 1016 903 1365 255 61 49 chrX 143097968 143098202 -19501728 - HAL1b LINE L1 -501 847 617 2404 78 0 3 chrX 143098202 143098498 -19501432 - AluSc SINE Alu -14 295 1 1365 255 61 49 chrX 143098498 143098890 -19501040 - HAL1b LINE L1 -731 617 214 3090 228 271 59 chrX 143099865 143101268 -19498662 + L2 LINE L2 961 2660 -654 635 162 43 35 chrX 143101276 143101484 -19498446 - MLT1C LTR MaLR -212 255 3 219 211 0 0 chrX 143105038 143105076 -19494854 + (CCG)n Simple_repeat Simple_repeat 2 39 0 7590 32 0 0 chrX 143105214 143106689 -19493241 - L1PA3 LINE L1 0 6155 4682 837 298 63 0 chrX 143106897 143107144 -19492786 - L2 LINE L2 -331 2982 2723 2292 182 12 157 chrX 143107173 143108032 -19491898 - L1PA13 LINE L1 -4449 3135 2384 4254 178 24 22 chrX 143108034 143109288 -19490642 - L1PA13 LINE L1 -6268 1313 14 1521 239 2 22 chrX 143109295 143109710 -19490220 - L1M4c LINE L1 -4559 1825 1419 280 153 0 17 chrX 143109725 143109784 -19490146 + L1MB8 LINE L1 4651 4708 -1438 503 184 10 0 chrX 143109803 143109901 -19490029 + L1MB8 LINE L1 5439 5537 -647 1569 145 31 43 chrX 143109908 143110225 -19489705 + L1MB8 LINE L1 5854 6168 -10 212 0 36 0 chrX 143110225 143110253 -19489677 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 41348 48 3 1 chrX 143110260 143116386 -19483544 - L1PA4 LINE L1 -18 6137 1 13628 32 3 0 chrX 143116391 143118128 -19481802 + L1P LINE L1 2692 4433 -1713 412 282 108 36 chrX 143118653 143119040 -19480890 + L1ME LINE L1 5409 5823 -298 40 21 0 0 chrX 143119071 143119118 -19480812 + AT_rich Low_complexity Low_complexity 1 47 0 347 182 0 0 chrX 143119655 143119710 -19480220 + Tigger5 DNA MER2_type 1 55 -2268 * 406 151 14 14 chrX 143119679 143119752 -19480178 + Tigger5 DNA MER2_type 2251 2323 0 375 293 61 55 chrX 143119888 143120078 -19479852 + L1M4c LINE L1 46 233 -2008 234 0 0 0 chrX 143120078 143120104 -19479826 + (TA)n Simple_repeat Simple_repeat 1 26 0 375 293 61 55 chrX 143120104 143120393 -19479537 + L1M4c LINE L1 233 1406 -835 522 212 15 121 chrX 143120801 143121065 -19478865 + MER106B DNA MER1_type 1 1059 0 634 227 140 74 chrX 143121103 143121642 -19478288 + L1MC5 LINE L1 6488 7070 -891 3526 230 41 29 chrX 143121689 143122643 -19477287 + L1M4 LINE L1 5 969 -5573 530 171 0 0 chrX 143122652 143122757 -19477173 + L1MB7 LINE L1 6073 6177 -7 520 205 24 42 chrX 143122879 143123045 -19476885 + L1MC5 LINE L1 7368 7530 -431 270 174 110 55 chrX 143124303 143124412 -19475518 - L2 LINE L2 -5 3308 3194 225 196 39 0 chrX 143124835 143124886 -19475044 + L2 LINE L2 3218 3270 -2 267 320 21 10 chrX 143125492 143125589 -19474341 + L2 LINE L2 3174 3271 -1 339 257 35 18 chrX 143125623 143125736 -19474194 + MIR SINE MIR 30 144 -64 236 345 0 12 chrX 143126627 143126711 -19473219 - MIR3 SINE MIR -21 187 105 252 282 19 10 chrX 143127210 143127313 -19472617 + L1M4 LINE L1 5476 5579 -599 231 114 0 0 chrX 143127886 143127921 -19472009 + (CCA)n Simple_repeat Simple_repeat 1 35 0 931 186 29 6 chrX 143127951 143128123 -19471807 + MER3 DNA MER1_type 7 182 -27 549 213 52 29 chrX 143128107 143128243 -19471687 + MER3 DNA MER1_type 71 209 0 * 22 0 0 0 chrX 143128620 143128642 -19471288 + AT_rich Low_complexity Low_complexity 1 22 0 187 227 106 30 chrX 143130673 143130739 -19469191 - L2 LINE L2 -161 3111 3041 216 221 184 142 chrX 143130757 143131024 -19468906 + L2 LINE L2 2995 3272 0 426 252 87 9 chrX 143131268 143131383 -19468547 - MER5A DNA MER1_type 0 189 66 2234 177 2 35 chrX 143131383 143131812 -19468118 - L1MA4 LINE L1 -6 6294 5880 529 272 22 33 chrX 143131942 143132122 -19467808 + MER5B DNA MER1_type 1 178 0 549 235 71 37 chrX 143132440 143132677 -19467253 + MIR SINE MIR 8 254 -8 662 299 46 63 chrX 143132869 143133283 -19466647 - L3 LINE CR1 -8 1569 1163 438 322 125 40 chrX 143133289 143133593 -19466337 - LTR16A LTR ERVL 0 450 121 2104 329 57 31 chrX 143134050 143134303 -19465627 - HERV16 LTR ERVL -449 5036 4791 1679 160 79 97 chrX 143134303 143134696 -19465234 - MLT1B LTR MaLR -4 386 1 2104 329 57 31 chrX 143134696 143135303 -19464627 - HERV16 LTR ERVL -694 4791 4202 2959 86 6 0 chrX 143135303 143135664 -19464266 - THE1B LTR MaLR -1 363 1 2104 329 57 31 chrX 143135664 143136173 -19463757 - HERV16 LTR ERVL -1283 4202 3606 1899 328 43 22 chrX 143136203 143137139 -19462791 - HERV16 LTR ERVL -1926 3070 2600 405 0 0 0 chrX 143137139 143137184 -19462746 + (CA)n Simple_repeat Simple_repeat 2 46 0 1899 328 43 22 chrX 143137184 143137322 -19462608 - HERV16 LTR ERVL -2396 2600 2466 19942 172 45 3 chrX 143137324 143139036 -19460894 + L1MA2 LINE L1 19 1659 -5906 204 40 0 0 chrX 143139036 143139061 -19460869 + (GA)n Simple_repeat Simple_repeat 2 26 0 19942 172 45 3 chrX 143139061 143143687 -19456243 + L1MA2 LINE L1 1659 6619 -946 5767 87 9 1 chrX 143143687 143144438 -19455492 + L1MA2 LINE L1 6960 7723 0 2776 310 36 15 chrX 143144498 143146239 -19453691 - HERV16 LTR ERVL -2514 2482 613 585 274 32 13 chrX 143146324 143146481 -19453449 - HERV16 LTR ERVL -4834 162 3 676 247 82 121 chrX 143146503 143146883 -19453047 - LTR16A LTR ERVL -21 429 65 227 346 31 37 chrX 143146908 143147070 -19452860 - L3 LINE CR1 -414 1163 1003 184 263 66 66 chrX 143147182 143147258 -19452672 + MIR SINE MIR 16 91 -117 422 204 92 28 chrX 143147312 143147454 -19452476 + MIR SINE MIR 97 247 -15 300 195 91 13 chrX 143147423 143147500 -19452430 + L2 LINE L2 3231 3313 0 * 395 257 134 31 chrX 143147560 143147756 -19452174 - MIR SINE MIR -48 214 4 213 132 0 0 chrX 143148910 143148948 -19450982 + (CAT)n Simple_repeat Simple_repeat 1 38 0 463 292 42 87 chrX 143149115 143149403 -19450527 + L2 LINE L2 2472 2746 -568 813 118 42 0 chrX 143149408 143149527 -19450403 - AluSg/x SINE Alu -7 303 180 641 101 0 0 chrX 143149528 143149617 -19450313 - HERVL LTR ERVL 0 5654 5566 26381 60 2 1 chrX 143149717 143152893 -19447037 + HERVL LTR ERVL 1926 5104 -550 674 216 12 19 chrX 143153109 143153271 -19446659 + L2 LINE L2 3147 3307 -6 1845 176 0 13 chrX 143153302 143153608 -19446322 - AluJo SINE Alu -10 302 1 531 289 80 50 chrX 143153616 143153671 -19446259 + MIR SINE MIR 17 69 -193 1739 185 0 3 chrX 143153671 143153973 -19445957 - AluJb SINE Alu -11 301 1 531 289 80 50 chrX 143153973 143154035 -19445895 + MIR SINE MIR 69 128 -134 2279 123 0 0 chrX 143154035 143154345 -19445585 - AluSg SINE Alu 0 310 1 531 289 80 50 chrX 143154345 143154465 -19445465 + MIR SINE MIR 128 262 0 201 39 0 0 chrX 143154620 143154646 -19445284 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2306 47 4 11 chrX 143154650 143154929 -19445001 - AluSc SINE Alu -32 277 1 2217 102 84 3 chrX 143155269 143155603 -19444327 - L1MA5 LINE L1 -6 6294 5934 641 136 71 36 chrX 143155793 143155933 -19443997 + L1MB8 LINE L1 6028 6172 -6 712 203 38 61 chrX 143155960 143156172 -19443758 + MIR SINE MIR 56 262 0 503 312 51 27 chrX 143156188 143156483 -19443447 - L2 LINE L2 -1042 2272 1971 1507 211 123 41 chrX 143156498 143156863 -19443067 - MSTD LTR MaLR 0 396 2 341 309 0 0 chrX 143156864 143156945 -19442985 - MSTD-int LTR MaLR 0 1735 1655 23 0 0 0 chrX 143156945 143156968 -19442962 + AT_rich Low_complexity Low_complexity 1 23 0 1547 173 186 43 chrX 143156971 143157417 -19442513 - LTR10A LTR ERV1 -99 510 1 12161 110 9 3 chrX 143157422 143159442 -19440488 - Harlequin LTR ERV1 -1 7784 2670 2108 108 0 0 chrX 143159687 143159964 -19439966 - AluY SINE Alu -14 297 21 1092 188 92 29 chrX 143160534 143160734 -19439196 - L1MD2 LINE L1 -2 6357 6134 242 95 24 0 chrX 143160734 143160776 -19439154 + (TG)n Simple_repeat Simple_repeat 2 44 0 1092 188 92 29 chrX 143160776 143160847 -19439083 - L1MD2 LINE L1 -225 6134 6069 2214 88 3 7 chrX 143160876 143161189 -19438741 + AluSq SINE Alu 1 312 0 21 36 0 0 chrX 143161395 143161423 -19438507 + AT_rich Low_complexity Low_complexity 1 28 0 614 307 105 37 chrX 143161776 143162186 -19437744 - L2 LINE L2 -41 3272 2835 473 286 8 15 chrX 143162286 143162419 -19437511 - L2 LINE L2 -1 3312 3181 517 243 128 54 chrX 143162445 143162535 -19437395 - MLT1J LTR MaLR -27 419 337 2406 88 0 0 chrX 143162535 143162842 -19437088 - AluY SINE Alu -4 307 1 517 243 128 54 chrX 143162842 143163122 -19436808 - MLT1J LTR MaLR -109 337 27 403 263 91 27 chrX 143163126 143163312 -19436618 - L2 LINE L2 -114 3199 3002 2253 110 0 0 chrX 143163507 143163807 -19436123 - AluSg SINE Alu -10 300 1 1672 152 21 76 chrX 143163859 143164189 -19435741 - AluJb SINE Alu 0 312 1 335 327 63 48 chrX 143165257 143165616 -19434314 + L2 LINE L2 2621 3056 -257 2272 83 3 3 chrX 143165773 143166063 -19433867 - AluSq SINE Alu -23 290 1 215 295 0 64 chrX 143166082 143166160 -19433770 + L2 LINE L2 3230 3302 -11 752 184 34 7 chrX 143166280 143166427 -19433503 + MER5A DNA MER1_type 35 185 -4 922 175 0 23 chrX 143166456 143166627 -19433303 - MLT1A2 LTR MaLR 0 374 208 32 26 0 0 chrX 143166665 143166704 -19433226 + AT_rich Low_complexity Low_complexity 1 39 0 1162 119 89 13 chrX 143166704 143167106 -19432824 - MER21B LTR ERV1 -371 492 1 4305 162 34 24 chrX 143167106 143167904 -19432026 - MER21B-int LTR ERV1 0 4191 3386 1837 116 42 17 chrX 143167904 143168241 -19431689 - MER4A LTR ERV1 0 664 261 647 112 10 10 chrX 143168241 143168339 -19431591 - MER4A LTR ERV1 -566 98 1 6258 150 14 19 chrX 143168342 143169348 -19430582 - MER21B-int LTR ERV1 -805 3386 2386 608 157 78 65 chrX 143169348 143169501 -19430429 - MLT1A2 LTR MaLR -200 165 11 2483 76 0 0 chrX 143169917 143170220 -19429710 - AluSc SINE Alu -6 303 1 3393 149 35 24 chrX 143170563 143170817 -19429113 - L1MC3 LINE L1 -3 7782 7532 2159 102 20 7 chrX 143170817 143171110 -19428820 - AluSx SINE Alu -15 297 1 3393 149 35 24 chrX 143171110 143171481 -19428449 - L1MC3 LINE L1 -253 7532 7150 1171 123 6 0 chrX 143172362 143172525 -19427405 - AluJb SINE Alu -15 297 134 1999 135 44 0 chrX 143172611 143172907 -19427023 - AluSx SINE Alu -3 309 1 262 96 39 0 chrX 143173004 143173056 -19426874 - L1MA4 LINE L1 -2 6298 6245 1736 150 14 0 chrX 143173081 143173361 -19426569 - AluSx SINE Alu -26 286 3 565 98 0 0 chrX 143173363 143173445 -19426485 - L1MC3 LINE L1 -91 7694 7613 1237 120 77 10 chrX 143173445 143173654 -19426276 + AluSq SINE Alu 39 261 -52 315 0 0 0 chrX 143173654 143173689 -19426241 + (GA)n Simple_repeat Simple_repeat 2 36 0 432 0 0 0 chrX 143173714 143173762 -19426168 + (TG)n Simple_repeat Simple_repeat 2 49 0 2509 142 19 0 chrX 143173767 143174177 -19425753 - L1MC3 LINE L1 -169 7616 7199 613 148 42 1 chrX 143174236 143174355 -19425575 - L1MA4 LINE L1 -174 6126 6013 539 159 159 0 chrX 143174355 143174443 -19425487 + AluSq/x SINE Alu 22 123 -189 277 196 0 0 chrX 143174574 143174620 -19425310 + AluSp SINE Alu 119 164 -139 441 96 92 0 chrX 143174621 143174707 -19425223 + L1MA4 LINE L1 6185 6285 -20 2164 124 7 0 chrX 143174739 143175037 -19424893 + AluSx SINE Alu 1 300 -12 1531 123 5 0 chrX 143175246 143175457 -19424473 - AluSq SINE Alu -24 289 78 2341 119 51 19 chrX 143175519 143175929 -19424001 - L1MA4 LINE L1 0 6300 5878 1813 104 0 76 chrX 143176949 143177238 -19422692 + AluSx SINE Alu 1 267 -45 1983 152 0 0 chrX 143178152 143178442 -19421488 + AluSx SINE Alu 1 290 -22 201 313 15 15 chrX 143178464 143178531 -19421399 - L3 LINE CR1 -2 1575 1509 818 72 56 16 chrX 143178899 143179024 -19420906 - L1PA13 LINE L1 -3 6160 6031 204 40 0 0 chrX 143179086 143179111 -19420819 + (T)n Simple_repeat Simple_repeat 1 25 0 306 273 173 0 chrX 143179554 143179664 -19420266 + L2 LINE L2 3185 3313 0 1665 186 10 14 chrX 143179763 143180054 -19419876 - AluJo SINE Alu -16 296 7 3290 194 21 63 chrX 143180723 143181201 -19418729 - L1ME1 LINE L1 -6 6160 5734 2107 136 3 0 chrX 143181201 143181496 -19418434 + AluSx SINE Alu 1 296 -16 3290 194 21 63 chrX 143181496 143181847 -19418083 - L1ME1 LINE L1 -432 5734 5370 2259 86 17 0 chrX 143181878 143182170 -19417760 + AluSx SINE Alu 1 297 -15 693 163 8 0 chrX 143182184 143182313 -19417617 - L1ME1 LINE L1 -858 5288 5159 2153 114 3 7 chrX 143182322 143182621 -19417309 - AluSx SINE Alu -14 298 1 4022 218 29 94 chrX 143182622 143182679 -19417251 - L1ME1 LINE L1 -973 5173 5114 1740 156 35 11 chrX 143182679 143182961 -19416969 - AluJb SINE Alu -23 289 1 4022 218 29 94 chrX 143182961 143183705 -19416225 - L1ME1 LINE L1 -1032 5114 4511 2121 95 37 27 chrX 143183705 143184000 -19415930 - AluSc SINE Alu -11 298 1 4022 218 29 94 chrX 143184000 143184693 -19415237 - L1ME1 LINE L1 -1635 4511 3775 207 179 0 0 chrX 143185101 143185140 -19414790 + (TG)n Simple_repeat Simple_repeat 1 39 0 194 242 288 13 chrX 143185265 143185418 -19414512 + MIR SINE MIR 51 245 -17 892 133 23 0 chrX 143185687 143185815 -19414115 + FLAM_C SINE Alu 2 132 -1 402 307 117 26 chrX 143187281 143187506 -19412424 + L2 LINE L2 2718 2975 -297 1155 274 57 33 chrX 143187506 143187959 -19411971 - LTR16B LTR ERVL 0 464 1 402 307 117 26 chrX 143187959 143188042 -19411888 + L2 LINE L2 2975 3049 -223 244 315 0 14 chrX 143188140 143188213 -19411717 + L2 LINE L2 3201 3272 0 574 196 15 15 chrX 143189074 143189207 -19410723 + MIR SINE MIR 125 257 -5 198 0 0 0 chrX 143189800 143189822 -19410108 + (TCC)n Simple_repeat Simple_repeat 2 23 0 244 289 11 11 chrX 143189951 143190041 -19409889 + L2 LINE L2 2310 2399 -915 476 248 57 57 chrX 143190241 143190451 -19409479 - L1ME3A LINE L1 0 6170 5961 2362 153 41 22 chrX 143190599 143191132 -19408798 - L1MA9 LINE L1 -22 6290 5652 189 0 0 0 chrX 143191178 143191199 -19408731 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 986 180 21 16 chrX 143191207 143191401 -19408529 - AluJo SINE Alu -37 275 81 237 167 0 74 chrX 143191723 143191777 -19408153 + L2 LINE L2 3264 3313 0 482 328 113 0 chrX 143192031 143192226 -19407704 - MIR SINE MIR -9 253 37 1918 142 3 16 chrX 143192258 143192569 -19407361 - AluSx SINE Alu -5 307 1 351 292 23 15 chrX 143193523 143193653 -19406277 - MIR SINE MIR -6 256 126 791 247 12 6 chrX 143193717 143193879 -19406051 + FAM SINE Alu 5 167 -8 544 286 85 0 chrX 143194423 143194612 -19405318 + MIR SINE MIR 58 262 0 1696 144 46 49 chrX 143194689 143194995 -19404935 - AluJo SINE Alu -7 305 1 349 342 0 0 chrX 143195553 143195673 -19404257 - MER5A DNA MER1_type -63 126 7 568 316 51 21 chrX 143195850 143195950 -19403980 - MIR SINE MIR 0 262 166 2303 80 0 54 chrX 143195950 143196263 -19403667 + AluSx SINE Alu 2 297 -15 568 316 51 21 chrX 143196263 143196396 -19403534 - MIR SINE MIR -96 166 22 1243 152 16 53 chrX 143196531 143196580 -19403350 - L1MB3 LINE L1 0 6183 6134 2085 129 3 0 chrX 143196580 143196883 -19403047 - AluSx SINE Alu -8 304 1 1243 152 16 53 chrX 143196883 143197077 -19402853 - L1MB3 LINE L1 -49 6134 5949 2622 40 0 3 chrX 143197644 143197946 -19401984 + L1PA5 LINE L1 5853 6153 -1 1995 131 0 35 chrX 143198479 143198792 -19401138 + AluJb SINE Alu 1 302 -10 2273 81 3 7 chrX 143198800 143199095 -19400835 + AluSx SINE Alu 1 294 -18 2841 16 0 0 chrX 143199224 143199534 -19400396 - AluYb8 SINE Alu -8 310 1 359 275 50 50 chrX 143199541 143199805 -19400125 - L1MC4a LINE L1 -315 5806 5663 203 111 83 0 chrX 143200030 143200066 -19399864 - MIR SINE MIR -73 189 151 1130 107 59 21 chrX 143200074 143200261 -19399669 - L1MA10 LINE L1 -2 6332 6139 824 130 55 7 chrX 143200261 143200407 -19399523 - L1MB1 LINE L1 -247 5921 5769 1813 137 10 41 chrX 143200477 143200806 -19399124 - AluSx SINE Alu 0 320 1 3309 147 11 15 chrX 143201041 143201555 -19398375 - L1MB1 LINE L1 -543 5791 5274 2329 94 0 34 chrX 143201555 143201875 -19398055 - AluSx SINE Alu -3 309 1 3309 147 11 15 chrX 143201875 143202231 -19397699 - L1MB1 LINE L1 -1060 5274 4918 644 338 16 64 chrX 143202451 143202827 -19397103 + L2 LINE L2 2818 3175 -97 1112 228 25 14 chrX 143202890 143203171 -19396759 + L2 LINE L2 3024 3307 -6 1845 176 0 13 chrX 143203202 143203508 -19396422 - AluJo SINE Alu -10 302 1 531 289 80 50 chrX 143203516 143203571 -19396359 + MIR SINE MIR 17 69 -193 1739 185 0 3 chrX 143203571 143203873 -19396057 - AluJb SINE Alu -11 301 1 531 289 80 50 chrX 143203873 143203935 -19395995 + MIR SINE MIR 69 128 -134 2279 123 0 0 chrX 143203935 143204245 -19395685 - AluSg SINE Alu 0 310 1 531 289 80 50 chrX 143204245 143204365 -19395565 + MIR SINE MIR 128 262 0 201 39 0 0 chrX 143204520 143204546 -19395384 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2243 65 4 11 chrX 143204550 143204829 -19395101 - AluSc SINE Alu -32 277 1 1399 171 94 22 chrX 143204939 143205214 -19394716 - AluJo SINE Alu -17 295 1 553 211 175 29 chrX 143205651 143205822 -19394108 - MIR SINE MIR -6 256 61 1913 161 0 19 chrX 143206212 143206529 -19393401 - AluJb SINE Alu -1 311 1 2074 120 0 0 chrX 143206738 143207058 -19392872 - AluSx SINE Alu 0 320 1 407 278 38 8 chrX 143207556 143207689 -19392241 + MIR SINE MIR 49 185 -77 4310 163 124 14 chrX 143207689 143208505 -19391425 - MER21A LTR ERV1 0 931 26 288 0 0 0 chrX 143208507 143208539 -19391391 + (TG)n Simple_repeat Simple_repeat 2 33 0 832 294 35 8 chrX 143208593 143208848 -19391082 + MIR SINE MIR 1 262 0 2379 105 0 0 chrX 143209468 143209773 -19390157 - AluSx SINE Alu -7 305 1 2792 13 0 13 chrX 143210174 143210489 -19389441 - AluYa5 SINE Alu 0 311 1 2217 102 84 3 chrX 143210831 143211165 -19388765 - L1MA5 LINE L1 -6 6294 5934 641 136 71 36 chrX 143211356 143211496 -19388434 + L1MB8 LINE L1 6028 6172 -6 712 203 38 61 chrX 143211523 143211735 -19388195 + MIR SINE MIR 56 262 0 503 312 51 27 chrX 143211751 143212046 -19387884 - L2 LINE L2 -1042 2272 1971 1507 211 123 41 chrX 143212061 143212426 -19387504 - MSTD LTR MaLR 0 396 2 341 309 0 0 chrX 143212427 143212508 -19387422 - MSTD-int LTR MaLR 0 1735 1655 23 0 0 0 chrX 143212508 143212531 -19387399 + AT_rich Low_complexity Low_complexity 1 23 0 1547 173 186 43 chrX 143212534 143212980 -19386950 - LTR10A LTR ERV1 -99 510 1 18879 91 24 59 chrX 143212985 143217084 -19382846 - Harlequin LTR ERV1 -1 7784 704 484 232 95 137 chrX 143217288 143217806 -19382124 - Harlequin LTR ERV1 -5962 687 192 595 214 110 0 chrX 143217948 143218093 -19381837 - Harlequin LTR ERV1 -6484 165 5 476 181 7 71 chrX 143218093 143218226 -19381704 - LTR10A LTR ERV1 0 609 437 216 97 0 0 chrX 143218241 143218272 -19381658 + (T)n Simple_repeat Simple_repeat 1 31 0 542 224 0 0 chrX 143218272 143218370 -19381560 - FRAM SINE Alu -71 105 8 5546 236 47 37 chrX 143218372 143219468 -19380462 - MSTD-int LTR MaLR -74 1661 526 2180 106 10 3 chrX 143219468 143219771 -19380159 - AluSg1 SINE Alu -4 305 1 5546 236 47 37 chrX 143219771 143220301 -19379629 - MSTD-int LTR MaLR -1209 526 3 2005 201 15 18 chrX 143220304 143220701 -19379229 - MSTD LTR MaLR 0 396 1 211 235 228 13 chrX 143220702 143220851 -19379079 - L2 LINE L2 -1357 1957 1777 460 277 10 0 chrX 143220857 143220958 -19378972 - L2 LINE L2 -2 3311 3210 1132 149 6 6 chrX 143221740 143221915 -19378015 + FAM SINE Alu 1 175 0 1931 156 0 13 chrX 143222685 143222987 -19376943 - AluJo SINE Alu -14 298 1 1799 148 20 14 chrX 143223004 143223301 -19376629 - AluJb SINE Alu -13 299 1 27 49 0 0 chrX 143223853 143223894 -19376036 + AT_rich Low_complexity Low_complexity 1 41 0 218 323 32 0 chrX 143225513 143225575 -19374355 - MIR3 SINE MIR -36 172 109 561 303 17 29 chrX 143226600 143226775 -19373155 - MIR SINE MIR -82 180 8 180 152 0 0 chrX 143227085 143227118 -19372812 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1949 76 8 4 chrX 143228106 143228379 -19371551 + AluY SINE Alu 35 308 0 1197 64 6 0 chrX 143229382 143229539 -19370391 - L1PB1 LINE L1 0 6151 5994 402 348 86 17 chrX 143230391 143230722 -19369208 - L2 LINE L2 -220 3052 2704 480 223 99 8 chrX 143230829 143230950 -19368980 + L2 LINE L2 3182 3313 0 4133 142 9 4 chrX 143231002 143231444 -19368486 - L1MB5 LINE L1 0 6174 5726 2191 116 3 0 chrX 143231444 143231737 -19368193 - AluSx SINE Alu -18 294 1 4133 142 9 4 chrX 143231737 143231990 -19367940 - L1MB5 LINE L1 -448 5726 5476 258 32 0 0 chrX 143233375 143233406 -19366524 + (TG)n Simple_repeat Simple_repeat 2 32 0 2186 103 10 0 chrX 143233870 143234170 -19365760 - AluSx SINE Alu -9 303 1 2447 101 7 0 chrX 143234350 143234657 -19365273 - AluSx SINE Alu -3 309 1 2336 82 0 0 chrX 143234699 143234990 -19364940 + AluSq SINE Alu 1 291 -22 334 273 144 36 chrX 143235024 143235163 -19364767 - MIR3 SINE MIR -43 165 12 449 222 43 8 chrX 143235461 143235578 -19364352 + MER103 DNA DNA 1 121 -45 204 250 107 0 chrX 143236536 143236592 -19363338 - MIR SINE MIR -62 146 85 1285 156 95 53 chrX 143236699 143236982 -19362948 - AluJo SINE Alu -17 295 1 259 211 0 53 chrX 143240112 143240169 -19359761 + MER5B DNA MER1_type 1 54 -124 255 398 80 0 chrX 143241212 143241388 -19358542 - L3b LINE CR1 -114 1469 1280 241 309 184 31 chrX 143242139 143242362 -19357568 - L3b LINE CR1 -5 1578 1322 521 310 35 0 chrX 143244282 143244427 -19355503 + MIR SINE MIR 2 151 -111 2140 64 52 0 chrX 143245717 143245984 -19353946 - AluY SINE Alu -30 281 1 40 37 0 0 chrX 143246222 143246276 -19353654 + AT_rich Low_complexity Low_complexity 1 54 0 929 135 0 0 chrX 143246276 143246409 -19353521 - AluSq/x SINE Alu -180 133 1 910 197 74 21 chrX 143246409 143246693 -19353237 - L1 LINE L1 -815 5331 5033 2001 101 40 13 chrX 143247171 143247469 -19352461 - AluSx SINE Alu -6 306 1 1513 118 59 86 chrX 143247566 143247690 -19352240 + AluJb SINE Alu 1 127 -185 2338 90 0 17 chrX 143247690 143248024 -19351906 + AluSx SINE Alu 1 312 0 1513 118 59 86 chrX 143248024 143248203 -19351727 + AluJb SINE Alu 127 296 -16 240 353 49 16 chrX 143248587 143248709 -19351221 - L2 LINE L2 -9 3304 3179 1411 122 5 0 chrX 143249967 143250199 -19349731 - AluSg/x SINE Alu 0 320 88 2071 113 3 23 chrX 143250200 143250501 -19349429 - AluSx SINE Alu -17 295 1 321 321 80 27 chrX 143250504 143250616 -19349314 - L2 LINE L2 -14 3258 3141 240 306 52 52 chrX 143252231 143252479 -19347451 - L2 LINE L2 -213 3059 2812 * 1141 322 152 9 chrX 143252476 143253060 -19346870 + L2 LINE L2 2350 3019 -253 339 310 0 55 chrX 143253080 143253225 -19346705 + L2 LINE L2 3136 3272 0 2962 154 81 2 chrX 143255560 143256139 -19343791 - L1MB5 LINE L1 -31 6143 5519 5418 137 39 36 chrX 143256282 143257345 -19342585 - L1MC1 LINE L1 0 7128 6063 1702 143 92 0 chrX 143257585 143257857 -19342073 + AluJb SINE Alu 1 297 -15 867 253 97 134 chrX 143258242 143258478 -19341452 - L2 LINE L2 -490 2824 2581 987 205 60 16 chrX 143258478 143258727 -19341203 - MIR SINE MIR 0 262 3 867 253 97 134 chrX 143258727 143259170 -19340760 - L2 LINE L2 -733 2581 2170 969 180 15 64 chrX 143259738 143259940 -19339990 - L1MC1 LINE L1 -3113 3828 3641 2101 103 21 0 chrX 143259940 143260221 -19339709 - AluSp SINE Alu -21 292 6 969 180 15 64 chrX 143260221 143260285 -19339645 - L1MC1 LINE L1 -3300 3641 3575 347 235 31 0 chrX 143260275 143260373 -19339557 - L1MC1 LINE L1 -4424 2698 2598 * 2685 148 44 49 chrX 143260385 143260428 -19339502 - L1MB4 LINE L1 -2 6178 6136 2326 81 3 7 chrX 143260428 143260723 -19339207 - AluSp SINE Alu -19 294 1 2685 148 44 49 chrX 143260723 143261276 -19338654 - L1MB4 LINE L1 -44 6136 5583 2174 124 0 3 chrX 143261276 143261574 -19338356 - AluSx SINE Alu -15 297 1 2685 148 44 49 chrX 143261574 143261586 -19338344 - L1MB4 LINE L1 -597 5583 5572 1004 266 110 39 chrX 143261582 143262348 -19337582 - L1MC1 LINE L1 -4543 2579 1760 * 1818 262 42 53 chrX 143262355 143262431 -19337499 - L1MC1 LINE L1 -4896 1527 1452 1740 176 7 20 chrX 143262431 143262733 -19337197 - AluJo SINE Alu -10 302 5 1818 262 42 53 chrX 143262733 143263403 -19336527 - L1MC1 LINE L1 -4971 1452 790 1736 266 25 22 chrX 143263535 143264091 -19335839 - L1MC1 LINE L1 -5840 583 26 252 282 39 39 chrX 143264114 143264217 -19335713 + L2 LINE L2 2714 2816 -498 473 277 262 0 chrX 143264915 143265121 -19334809 - MIR SINE MIR 0 262 3 24 0 0 0 chrX 143265770 143265794 -19334136 + AT_rich Low_complexity Low_complexity 1 24 0 2423 102 0 6 chrX 143266404 143266718 -19333212 + AluSx SINE Alu 1 312 0 235 338 0 0 chrX 143268751 143268825 -19331105 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 274 258 157 11 chrX 143269418 143269507 -19330423 + L2 LINE L2 3210 3311 -2 559 169 310 0 chrX 143269764 143269906 -19330024 + MER5A DNA MER1_type 4 189 0 2267 114 3 0 chrX 143270453 143270760 -19329170 + AluSq SINE Alu 1 308 -5 620 259 35 8 chrX 143272231 143272437 -19327493 - MIR SINE MIR 0 262 53 186 133 0 0 chrX 143273449 143273479 -19326451 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 298 325 12 0 chrX 143276759 143276839 -19323091 - MIR SINE MIR -85 123 43 2255 168 70 29 chrX 143277186 143277675 -19322255 - MER21A LTR ERV1 0 931 423 3808 180 45 33 chrX 143277717 143278502 -19321428 - MER21B LTR ERV1 -57 806 13 822 239 27 0 chrX 143278724 143278908 -19321022 + MER5A DNA MER1_type 1 189 0 300 27 0 0 chrX 143279907 143279944 -19319986 + (TG)n Simple_repeat Simple_repeat 1 37 0 1796 144 47 7 chrX 143280036 143280313 -19319617 + AluJo SINE Alu 1 288 -24 2187 141 0 0 chrX 143280358 143280657 -19319273 - AluSx SINE Alu -13 299 1 2314 104 0 7 chrX 143281177 143281484 -19318446 - AluSx SINE Alu -5 307 3 192 354 127 0 chrX 143282582 143282661 -19317269 - MIR SINE MIR -85 123 35 2479 86 0 0 chrX 143282807 143283111 -19316819 + AluSx SINE Alu 1 304 -8 454 319 108 48 chrX 143284259 143284758 -19315172 + L2 LINE L2 2710 3233 -39 1797 173 17 0 chrX 143286524 143286813 -19313117 - AluJo SINE Alu -17 295 2 2411 69 0 22 chrX 143288042 143288360 -19311570 - AluY SINE Alu 0 311 1 1961 159 3 13 chrX 143288659 143288973 -19310957 - AluSx SINE Alu -1 311 1 28 79 0 0 chrX 143289057 143289120 -19310810 + AT_rich Low_complexity Low_complexity 1 63 0 1909 173 6 0 chrX 143289332 143289678 -19310252 - L1PA16 LINE L1 -24 6142 5795 7464 235 39 17 chrX 143289682 143291571 -19308359 - L1PBb LINE L1 -1992 4857 3010 2033 117 3 3 chrX 143291571 143291854 -19308076 - AluSx SINE Alu -25 287 5 7464 235 39 17 chrX 143291854 143292249 -19307681 - L1PBb LINE L1 -3839 3010 2625 1286 213 52 31 chrX 143292249 143292536 -19307394 + AluJo SINE Alu 1 293 -19 7464 235 39 17 chrX 143292536 143293617 -19306313 - L1PBb LINE L1 -4224 2625 1361 273 304 0 0 chrX 143293627 143293719 -19306211 - L1PBb LINE L1 -5285 1564 1473 391 423 52 27 chrX 143294592 143294996 -19304934 - L1PBb LINE L1 -6431 419 6 356 223 289 25 chrX 143296437 143296634 -19303296 - MIR SINE MIR -13 249 1 1265 199 129 32 chrX 143296845 143297084 -19302846 - MLT1A2 LTR MaLR 0 374 160 2593 92 20 3 chrX 143297084 143297433 -19302497 - THE1A LTR MaLR 0 355 1 11972 84 10 1 chrX 143297433 143299000 -19300930 - THE1A-int LTR MaLR 0 1580 1 2811 65 6 0 chrX 143299000 143299353 -19300577 - THE1A LTR MaLR 0 355 1 1265 199 129 32 chrX 143299353 143299452 -19300478 - MLT1A2 LTR MaLR -213 161 1 417 183 97 12 chrX 143299452 143299568 -19300362 - MLT1A2 LTR MaLR -228 137 1 507 274 147 0 chrX 143300487 143300644 -19299286 + MER5A DNA MER1_type 9 188 -1 577 228 47 53 chrX 143300875 143301046 -19298884 - MER5B DNA MER1_type -7 171 2 429 20 0 0 chrX 143301077 143301127 -19298803 + (TA)n Simple_repeat Simple_repeat 2 51 0 882 264 60 39 chrX 143301302 143301737 -19298193 - MLT2C2 LTR ERVL 0 464 21 23 0 0 0 chrX 143302206 143302229 -19297701 + AT_rich Low_complexity Low_complexity 1 23 0 406 342 88 34 chrX 143302761 143303284 -19296646 + L2 LINE L2 2228 2778 -536 258 105 0 0 chrX 143303780 143303818 -19296112 + (CA)n Simple_repeat Simple_repeat 1 38 0 238 371 29 14 chrX 143304755 143304895 -19295035 + L2 LINE L2 2922 3063 -209 783 179 313 30 chrX 143306586 143306854 -19293076 - MER2 DNA MER2_type 0 344 1 538 202 1 3 chrX 143308644 143308776 -19291154 - L1ME2 LINE L1 0 6170 6040 753 169 24 0 chrX 143308783 143308907 -19291023 + AluJb SINE Alu 9 135 -177 1891 141 47 0 chrX 143309126 143309403 -19290527 - AluSx SINE Alu -22 290 1 533 248 0 0 chrX 143309403 143309532 -19290398 - L1MB7 LINE L1 -42 6142 6014 267 250 11 11 chrX 143309535 143309623 -19290307 - L1ME2 LINE L1 -215 5906 5819 375 347 17 4 chrX 143310158 143310330 -19289600 - MIR SINE MIR -62 146 18 531 271 0 15 chrX 143311070 143311203 -19288727 - L2 LINE L2 0 3313 3183 577 272 86 31 chrX 143311336 143311785 -19288145 - MARNA DNA Mariner -56 530 11 269 61 0 0 chrX 143311874 143311907 -19288023 - MER1B DNA MER1_type 0 339 307 * 280 158 0 18 chrX 143311903 143311960 -19287970 - MER1B DNA MER1_type -185 112 57 12661 182 13 33 chrX 143313419 143316586 -19283344 - L1PA15 LINE L1 0 6165 3053 1840 140 34 3 chrX 143316586 143316878 -19283052 - AluSx SINE Alu -11 301 1 12661 182 13 33 chrX 143316878 143317382 -19282548 - L1PA15 LINE L1 -3112 3053 2540 1138 239 84 23 chrX 143317990 143318333 -19281597 - L2 LINE L2 -1 3312 2949 228 217 11 98 chrX 143318864 143318956 -19280974 + L1P5 LINE L1 5758 5841 -310 189 247 300 41 chrX 143319063 143319233 -19280697 + L2 LINE L2 3043 3256 -16 224 309 15 0 chrX 143319587 143319655 -19280275 - L2 LINE L2 0 3313 3245 856 205 19 0 chrX 143319655 143319811 -19280119 - MER90 LTR ERV1 0 614 456 1329 186 151 66 chrX 143321190 143321748 -19278182 - L1MC5 LINE L1 -28 7933 7329 271 337 99 29 chrX 143321748 143321920 -19278010 - MIR3 SINE MIR -15 193 10 556 225 108 52 chrX 143322054 143322267 -19277663 + MIR SINE MIR 36 260 -2 394 310 69 57 chrX 143323880 143323973 -19275957 + MIR SINE MIR 15 105 -157 699 247 23 6 chrX 143323973 143324147 -19275783 + MER5B DNA MER1_type 2 178 0 394 310 69 57 chrX 143324147 143324298 -19275632 + MIR SINE MIR 105 262 0 258 314 38 9 chrX 143325669 143325774 -19274156 + MIR3 SINE MIR 71 178 -30 249 57 0 0 chrX 143327178 143327213 -19272717 + (GA)n Simple_repeat Simple_repeat 1 35 0 849 111 8 0 chrX 143327370 143327487 -19272443 + FLAM_C SINE Alu 1 118 -15 333 0 0 0 chrX 143327491 143327528 -19272402 + (TA)n Simple_repeat Simple_repeat 1 37 0 52 0 0 0 chrX 143327528 143327580 -19272350 + AT_rich Low_complexity Low_complexity 1 52 0 667 200 100 0 chrX 143328021 143328171 -19271759 + MIR SINE MIR 58 222 -40 22 0 0 0 chrX 143329501 143329523 -19270407 + AT_rich Low_complexity Low_complexity 1 22 0 192 97 0 0 chrX 143334431 143334462 -19265468 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 320 339 36 0 chrX 143335215 143335327 -19264603 - L2 LINE L2 -8 3264 3149 501 274 65 8 chrX 143341009 143341133 -19258797 - L2 LINE L2 0 3272 3142 222 299 45 0 chrX 143344301 143344368 -19255562 - L2 LINE L2 -10 3303 3234 862 261 95 0 chrX 143345603 143345825 -19254105 - MIR SINE MIR -5 257 15 929 206 116 52 chrX 143345894 143346239 -19253691 + L1MC4a LINE L1 7410 7776 -32 301 223 100 46 chrX 143346339 143346469 -19253461 - MIR SINE MIR -31 231 95 488 291 86 0 chrX 143346873 143347093 -19252837 - LTR33A LTR ERVL -59 464 226 308 286 55 22 chrX 143348082 143348173 -19251757 + L2 LINE L2 3219 3312 -1 214 167 0 0 chrX 143348868 143348904 -19251026 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1421 66 0 6 chrX 143349433 143349614 -19250316 - AluY SINE Alu -13 298 119 1808 10 0 0 chrX 143349629 143349826 -19250104 - BC200 scRNA scRNA -3 197 1 443 314 25 0 chrX 143350502 143350638 -19249292 + MIR SINE MIR 1 145 -63 3228 156 21 9 chrX 143350640 143350673 -19249257 - MLT2B3 LTR ERVL 0 554 523 216 0 0 0 chrX 143350673 143350697 -19249233 + (GA)n Simple_repeat Simple_repeat 2 25 0 3228 156 21 9 chrX 143350697 143351194 -19248736 - MLT2B3 LTR ERVL -31 523 18 2319 97 0 0 chrX 143351280 143351579 -19248351 + AluSq SINE Alu 1 299 -14 434 315 0 8 chrX 143351699 143351826 -19248104 - MIR3 SINE MIR -43 165 40 896 319 63 33 chrX 143351913 143352261 -19247669 - L3 LINE CR1 -234 1343 980 1958 149 0 10 chrX 143352261 143352569 -19247361 - AluSx SINE Alu -7 305 1 896 319 63 33 chrX 143352569 143352615 -19247315 - L3 LINE CR1 -597 980 937 1038 242 144 21 chrX 143352651 143353081 -19246849 - MLT1D LTR MaLR 0 488 1 274 279 0 0 chrX 143353082 143353150 -19246780 - L3 LINE CR1 -703 874 807 489 312 0 14 chrX 143353746 143353887 -19246043 + L2 LINE L2 3134 3272 0 844 204 54 5 chrX 143354004 143354190 -19245740 + MIR SINE MIR 63 257 -5 451 218 38 38 chrX 143354220 143354353 -19245577 + L2 LINE L2 3180 3312 -1 367 310 21 28 chrX 143354587 143354729 -19245201 - L3 LINE CR1 -786 791 651 2327 97 0 0 chrX 143355663 143355963 -19243967 + AluSx SINE Alu 1 300 -12 5821 100 89 14 chrX 143355963 143356892 -19243038 + HSMAR2 DNA Mariner 303 1301 -1 344 296 15 15 chrX 143357096 143357231 -19242699 + L1ME4a LINE L1 5967 6101 -20 24 32 0 0 chrX 143357241 143357272 -19242658 + AT_rich Low_complexity Low_complexity 1 31 0 332 204 51 31 chrX 143358138 143358236 -19241694 - L1MC4 LINE L1 -1341 6701 6602 264 325 26 0 chrX 143358374 143358491 -19241439 - L1ME LINE L1 -397 5724 5605 326 255 0 66 chrX 143358648 143358754 -19241176 + MER58C DNA MER1_type 117 215 0 974 279 56 0 chrX 143359073 143359444 -19240486 - L2 LINE L2 -238 3075 2690 2784 128 38 29 chrX 143359641 143359848 -19240082 + L1MA8 LINE L1 4820 5024 -1267 866 116 34 0 chrX 143359848 143359968 -19239962 + L1MA6 LINE L1 6148 6276 -24 288 77 0 0 chrX 143359968 143360007 -19239923 + (TA)n Simple_repeat Simple_repeat 2 40 0 866 116 34 0 chrX 143360007 143360031 -19239899 + L1MA6 LINE L1 6276 6298 -2 2784 128 38 29 chrX 143360031 143360734 -19239196 + L1MA8 LINE L1 5024 5742 -549 381 132 0 79 chrX 143360749 143360938 -19238992 + (TA)n Simple_repeat Simple_repeat 1 174 0 * 396 86 0 106 chrX 143360892 143361090 -19238840 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 2555 126 39 56 chrX 143361113 143361409 -19238521 + L1MA8 LINE L1 5782 6067 -224 2196 117 3 13 chrX 143361409 143361725 -19238205 - AluSq SINE Alu 0 313 1 2555 126 39 56 chrX 143361725 143361946 -19237984 + L1MA8 LINE L1 6067 6290 -1 764 289 122 11 chrX 143363281 143363494 -19236436 - HAL1 LINE L1 -604 1903 1715 198 0 0 0 chrX 143363494 143363516 -19236414 + (TAA)n Simple_repeat Simple_repeat 1 22 0 764 289 122 11 chrX 143363516 143363679 -19236251 - HAL1 LINE L1 -792 1715 1485 6355 160 10 36 chrX 143363680 143365068 -19234862 - L1PA16 LINE L1 -4 6162 4740 2101 113 3 3 chrX 143365068 143365375 -19234555 - AluSx SINE Alu 0 307 1 6355 160 10 36 chrX 143365375 143365801 -19234129 - L1PA16 LINE L1 -1426 4740 4425 509 95 0 0 chrX 143365801 143365885 -19234045 - L1PB1 LINE L1 -1 6150 6067 6355 160 10 36 chrX 143365885 143366397 -19233533 - L1PA16 LINE L1 -1741 4425 3901 225 224 44 150 chrX 143366394 143366637 -19233293 - HAL1 LINE L1 -1024 1483 1216 * 233 29 29 0 chrX 143366637 143366671 -19233259 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2058 112 7 0 chrX 143366672 143366950 -19232980 - AluSx SINE Alu -32 280 1 225 224 44 150 chrX 143366950 143367044 -19232886 - HAL1 LINE L1 -1290 1217 1180 313 271 35 53 chrX 143367049 143367219 -19232711 + L2 LINE L2 1248 1414 -1900 1024 300 87 5 chrX 143367219 143367589 -19232341 - LTR16A LTR ERVL -50 400 1 329 323 0 0 chrX 143367607 143367703 -19232227 - MER63A DNA MER1_type 0 210 115 344 288 42 57 chrX 143367706 143367918 -19232012 - HAL1 LINE L1 -1395 1112 904 761 295 73 73 chrX 143367923 143368014 -19231916 - L2 LINE L2 -2 3311 3221 599 173 0 0 chrX 143368014 143368118 -19231812 + U13 snRNA snRNA 1 104 0 761 295 73 73 chrX 143368118 143368480 -19231450 - L2 LINE L2 -91 3222 2858 1518 170 53 34 chrX 143368737 143369109 -19230821 - MLT2C1 LTR ERVL -20 394 1 308 297 61 72 chrX 143369111 143369502 -19230428 - HAL1 LINE L1 -1636 871 485 309 286 59 8 chrX 143370336 143370455 -19229475 + L1ME LINE L1 5319 5443 -678 2267 142 24 12 chrX 143370644 143371067 -19228863 + L1MB8 LINE L1 5746 6173 -5 301 290 47 32 chrX 143371307 143371496 -19228434 + MIR SINE MIR 30 218 -44 1969 150 0 32 chrX 143372233 143372547 -19227383 - AluJb SINE Alu -8 304 1 1182 286 118 21 chrX 143372908 143373391 -19226539 - MLT1K LTR MaLR -1 587 58 1736 124 0 19 chrX 143373719 143373977 -19225953 + AluSx SINE Alu 44 296 -16 477 97 0 0 chrX 143373996 143374068 -19225862 + (GGAGA)n Simple_repeat Simple_repeat 5 76 0 356 151 11 32 chrX 143374056 143374149 -19225781 + GA-rich Low_complexity Low_complexity 4 94 0 * 321 330 112 56 chrX 143374519 143374752 -19225178 - L2 LINE L2 0 3272 3027 1117 93 31 46 chrX 143375015 143375075 -19224855 - L1MD1 LINE L1 -5 6237 6178 2313 95 10 0 chrX 143375075 143375379 -19224551 + AluSx SINE Alu 1 307 -5 1117 93 31 46 chrX 143375379 143375512 -19224418 - L1MD1 LINE L1 -64 6178 6047 381 225 213 6 chrX 143375609 143375778 -19224152 - L1ME LINE L1 -323 5798 5595 1275 151 24 12 chrX 143375778 143376030 -19223900 - L1ME LINE L1 -1230 4916 4662 263 249 121 12 chrX 143376349 143376514 -19223416 - L1ME4a LINE L1 -94 6027 5845 279 0 0 0 chrX 143376890 143376921 -19223009 + (TG)n Simple_repeat Simple_repeat 2 32 0 317 271 182 84 chrX 143378005 143378495 -19221435 - L1M2 LINE L1 -5469 1380 843 313 301 82 91 chrX 143378173 143378578 -19221352 + L1M2 LINE L1 735 1135 -5714 * 180 0 0 0 chrX 143378648 143378668 -19221262 + (CCCG)n Simple_repeat Simple_repeat 3 22 0 198 0 0 0 chrX 143380044 143380066 -19219864 + (A)n Simple_repeat Simple_repeat 1 22 0 250 332 106 25 chrX 143380722 143380957 -19218973 - L2 LINE L2 -337 2977 2724 356 343 29 15 chrX 143380961 143381098 -19218832 - MER91C DNA MER1_type -1 139 1 285 348 119 20 chrX 143381169 143381514 -19218416 - L2 LINE L2 -649 2665 2287 2020 213 54 88 chrX 143383142 143383869 -19216061 - L2 LINE L2 -274 3039 2338 1264 158 0 0 chrX 143383870 143384053 -19215877 - AluSg/x SINE Alu -17 295 113 3394 139 16 23 chrX 143384053 143384670 -19215260 - L1P LINE L1 -1923 4223 3611 1885 170 68 32 chrX 143384703 143385144 -19214786 - LTR2B LTR ERV1 0 490 34 1165 191 0 0 chrX 143385166 143385386 -19214544 - L1 LINE L1 -1922 4224 4005 4406 195 21 13 chrX 143385402 143387002 -19212928 - L1MB8 LINE L1 -6 6172 4559 2035 139 0 13 chrX 143387171 143387473 -19212457 + AluJo SINE Alu 1 298 -14 217 294 0 68 chrX 143388238 143388384 -19211546 + T-rich Low_complexity Low_complexity 4 139 0 400 228 103 37 chrX 143388598 143388734 -19211196 - L2 LINE L2 -8 3305 3161 1225 144 0 0 chrX 143390112 143390292 -19209638 + FRAM SINE Alu 1 175 -1 357 304 29 22 chrX 143390800 143390938 -19208992 + L2 LINE L2 3175 3313 0 525 263 35 26 chrX 143391555 143392033 -19207897 - L1ME LINE L1 -651 5502 5026 373 255 6 57 chrX 143392174 143392233 -19207697 - L1ME LINE L1 -5966 153 93 1962 144 0 0 chrX 143392233 143392524 -19207406 - AluJb SINE Alu -21 291 1 373 255 6 57 chrX 143392524 143392621 -19207309 - L1ME LINE L1 -6026 93 5 4307 127 19 7 chrX 143392871 143393574 -19206356 - MER50 LTR ERV1 -23 711 1 838 247 61 16 chrX 143393648 143393895 -19206035 - MIR SINE MIR 0 262 5 37115 79 7 7 chrX 143393949 143400089 -19199841 + L1PA6 LINE L1 11 6151 -3 4137 186 35 21 chrX 143400328 143401635 -19198295 - L1MB8 LINE L1 0 6178 4848 2041 253 2 6 chrX 143401643 143402122 -19197808 + L1M2 LINE L1 11 487 -6362 352 310 0 0 chrX 143402147 143402234 -19197696 + L1M2 LINE L1 1262 1348 -5501 572 246 0 0 chrX 143402413 143402527 -19197403 - AluJb SINE Alu -194 118 5 1080 307 47 2 chrX 143402597 143403001 -19196929 + L1M2 LINE L1 714 1135 -5714 869 220 6 12 chrX 143403001 143403169 -19196761 + AluJo SINE Alu 5 171 -141 4013 180 8 7 chrX 143403201 143404055 -19195875 + L1M2 LINE L1 1763 2617 -4232 2113 92 3 3 chrX 143404085 143404400 -19195530 + L1MA1 LINE L1 5946 6260 -42 245 146 21 0 chrX 143404413 143404461 -19195469 + (TA)n Simple_repeat Simple_repeat 1 49 0 * 341 226 83 12 chrX 143404414 143404498 -19195432 + L1MC4 LINE L1 6614 6703 -1339 237 167 0 0 chrX 143404470 143404518 -19195412 + LTR66 LTR ERVL 394 441 -169 * 302 210 12 12 chrX 143404543 143404624 -19195306 + L1M2 LINE L1 2621 2701 -4148 7763 146 22 14 chrX 143404639 143405912 -19194018 + L1M1 LINE L1 15 1297 -6268 618 189 0 8 chrX 143405937 143406069 -19193861 + L1M1 LINE L1 3660 3790 -3775 2135 121 7 3 chrX 143406101 143406406 -19193524 + AluSx SINE Alu 1 306 -6 1630 194 9 59 chrX 143406456 143406715 -19193215 + L1M1 LINE L1 3781 4012 -3553 1509 89 4 61 chrX 143406715 143406962 -19192968 + L1PA14 LINE L1 5926 6158 -3 1630 194 9 59 chrX 143406962 143407124 -19192806 + L1M1 LINE L1 4012 4181 -3384 * 3362 149 39 8 chrX 143407122 143407824 -19192106 + L1MA4A LINE L1 5517 6274 -26 1529 240 62 24 chrX 143407824 143408430 -19191500 - L1M4 LINE L1 -1286 4860 4182 402 232 32 0 chrX 143408451 143408546 -19191384 - MER68 LTR ERV1 -7 555 458 248 122 33 104 chrX 143408679 143408784 -19191146 - HsTC2 DNA Tc2 -63 1835 14 254 346 89 51 chrX 143409228 143409578 -19190352 + L2 LINE L2 2947 3309 -4 219 288 17 0 chrX 143410280 143410339 -19189591 + L2 LINE L2 3211 3270 -2 200 89 22 44 chrX 143410347 143410392 -19189538 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 342 333 53 0 chrX 143410395 143410545 -19189385 + MIR SINE MIR 105 262 0 2353 77 3 16 chrX 143411084 143411397 -19188533 - AluSc SINE Alu 0 309 1 2023 125 3 29 chrX 143411424 143411737 -19188193 + AluJo SINE Alu 3 307 -5 315 324 44 44 chrX 143412378 143412560 -19187370 - L3 LINE CR1 -34 1543 1362 260 239 209 22 chrX 143412665 143412799 -19187131 - MER103 DNA DNA -7 159 1 332 156 0 62 chrX 143412832 143412896 -19187034 + L2 LINE L2 3254 3313 0 24 0 0 0 chrX 143413119 143413143 -19186787 + AT_rich Low_complexity Low_complexity 1 24 0 2542 55 0 3 chrX 143414043 143414354 -19185576 + AluY SINE Alu 1 310 -1 7282 145 15 13 chrX 143414408 143414663 -19185267 + L1MA4 LINE L1 4019 4272 -2028 1595 59 0 32 chrX 143414663 143414884 -19185046 + L1PA5 LINE L1 5941 6154 0 7282 145 15 13 chrX 143414884 143416622 -19183308 + L1MA4 LINE L1 4272 6019 -281 339 177 153 0 chrX 143416602 143416709 -19183221 + L1MB3 LINE L1 6062 6180 0 * 211 293 40 10 chrX 143416723 143416822 -19183108 - MIR SINE MIR -77 131 30 604 280 133 14 chrX 143417934 143418145 -19181785 - MIR SINE MIR -14 248 13 259 188 75 38 chrX 143418141 143418221 -19181709 + MIR SINE MIR 130 212 -50 * 2736 131 19 19 chrX 143419182 143419663 -19180267 - L1MB3 LINE L1 -1 6182 5702 1661 202 3 0 chrX 143420045 143420332 -19179598 - AluJo SINE Alu -24 288 1 21 82 0 0 chrX 143420940 143420989 -19178941 + AT_rich Low_complexity Low_complexity 1 49 0 2277 216 42 53 chrX 143421283 143422002 -19177928 - L1MEc LINE L1 -3439 2776 2111 2130 113 0 0 chrX 143422033 143422315 -19177615 - AluSx SINE Alu -30 282 1 190 335 31 75 chrX 143423811 143424065 -19175865 + L3b LINE CR1 1171 1413 -170 198 0 0 0 chrX 143425128 143425150 -19174780 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 318 67 0 0 chrX 143429192 143429237 -19170693 + (TA)n Simple_repeat Simple_repeat 2 46 0 338 250 154 0 chrX 143430376 143430480 -19169450 + MIR SINE MIR 113 232 -30 735 239 72 68 chrX 143431661 143431925 -19168005 + Charlie8 DNA MER1_type 1 265 -2152 238 242 32 16 chrX 143432002 143432064 -19167866 + Charlie8 DNA MER1_type 1355 1417 -1000 2369 148 123 2 chrX 143432243 143432674 -19167256 - MLT1D LTR MaLR 0 505 23 248 224 0 0 chrX 143432683 143432732 -19167198 + MIR SINE MIR 119 167 -95 623 112 18 5 chrX 143434335 143434445 -19165485 - L1M LINE L1 -807 5354 5256 1706 74 37 8 chrX 143434445 143434675 -19165255 + L1PA14 LINE L1 5902 6152 -9 1934 148 0 3 chrX 143434741 143435031 -19164899 - AluSx SINE Alu -23 289 1 1558 174 78 11 chrX 143435309 143435591 -19164339 - AluJb SINE Alu -11 301 1 566 130 0 11 chrX 143436010 143436102 -19163828 - L1MC1 LINE L1 0 6333 6243 959 326 116 27 chrX 143436207 143436829 -19163101 + L2 LINE L2 2203 2879 -435 435 238 248 29 chrX 143436861 143437071 -19162859 + MIR SINE MIR 7 262 0 302 235 35 12 chrX 143437137 143437222 -19162708 - L2 LINE L2 0 3313 3227 265 213 0 25 chrX 143438288 143438368 -19161562 + (TATG)n Simple_repeat Simple_repeat 2 79 0 216 0 0 0 chrX 143439096 143439120 -19160810 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 863 281 9 9 chrX 143439312 143439529 -19160401 + MIR SINE MIR 46 262 0 207 173 0 0 chrX 143439759 143439811 -19160119 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 24 53 0 0 chrX 143440824 143440862 -19159068 + AT_rich Low_complexity Low_complexity 1 38 0 2021 143 11 58 chrX 143440992 143441357 -19158573 + MER7A DNA MER2_type 1 346 0 256 290 22 4 chrX 143441376 143441479 -19158451 + MIR SINE MIR 35 91 -117 5239 90 11 0 chrX 143441765 143442500 -19157430 - L1PA16 LINE L1 -4 6162 5420 440 350 0 44 chrX 143442556 143442762 -19157168 + MIR SINE MIR 64 260 -2 775 196 0 0 chrX 143443174 143443307 -19156623 + FLAM_A SINE Alu 1 133 0 26 30 0 0 chrX 143444665 143444698 -19155232 + AT_rich Low_complexity Low_complexity 1 33 0 2586 231 25 79 chrX 143445348 143445858 -19154072 - L1MC4 LINE L1 -21 8021 7590 1871 127 33 0 chrX 143445858 143446134 -19153796 - AluJo SINE Alu -15 297 13 2586 231 25 79 chrX 143446134 143446625 -19153305 - L1MC4 LINE L1 -452 7590 7074 5526 167 21 27 chrX 143446659 143447513 -19152417 - L1PA16 LINE L1 -9 6157 5300 7554 31 0 0 chrX 143447513 143448884 -19151046 - L1PA4 LINE L1 -3 6152 4783 5526 167 21 27 chrX 143448884 143450001 -19149929 - L1PA16 LINE L1 -866 5300 4176 1099 251 26 7 chrX 143450037 143450308 -19149622 - L1MC4a LINE L1 -916 6892 6617 279 0 0 0 chrX 143450366 143450376 -19149554 + (CA)n Simple_repeat Simple_repeat 1 41 0 279 0 0 0 chrX 143450376 143450407 -19149523 + (CA)n Simple_repeat Simple_repeat 2 32 0 932 142 0 13 chrX 143450914 143451069 -19148861 - L1PB1 LINE L1 -2 6149 5997 506 277 88 6 chrX 143451390 143451549 -19148381 + MIR SINE MIR 73 244 -18 1065 114 18 0 chrX 143451899 143452066 -19147864 - L1MB2 LINE L1 -2 6169 6000 192 40 0 0 chrX 143452517 143452542 -19147388 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 483 286 0 43 chrX 143453674 143453859 -19146071 + MER5B DNA MER1_type 1 177 -1 26 50 0 0 chrX 143454131 143454171 -19145759 + AT_rich Low_complexity Low_complexity 1 40 0 306 0 0 0 chrX 143455863 143455897 -19144033 + (CA)n Simple_repeat Simple_repeat 1 34 0 370 117 13 52 chrX 143455935 143456012 -19143918 - L1PB4 LINE L1 -2 6154 6081 21 36 0 0 chrX 143456537 143456565 -19143365 + AT_rich Low_complexity Low_complexity 1 28 0 527 264 26 26 chrX 143456715 143456870 -19143060 + MIR SINE MIR 30 184 -78 185 116 0 23 chrX 143457828 143457871 -19142059 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 280 188 16 47 chrX 143457887 143457951 -19141979 + L2 LINE L2 3211 3272 0 548 264 138 74 chrX 143458018 143458424 -19141506 + L2 LINE L2 2231 2662 -652 521 261 73 123 chrX 143458449 143458790 -19141140 + L2 LINE L2 2926 3249 -23 543 310 155 5 chrX 143459458 143459671 -19140259 + MIR SINE MIR 11 255 -7 202 218 182 0 chrX 143459799 143459854 -19140076 + L2 LINE L2 3208 3272 0 970 167 0 0 chrX 143460560 143460722 -19139208 - FAM SINE Alu -10 165 4 1864 160 3 16 chrX 143460827 143461140 -19138790 - AluJo SINE Alu -1 311 3 799 249 118 9 chrX 143461210 143461439 -19138491 + MIR SINE MIR 2 255 -7 401 284 47 27 chrX 143461571 143461719 -19138211 + MIR SINE MIR 106 256 -6 710 116 0 0 chrX 143462991 143463103 -19136827 - L1MA5 LINE L1 -2 6298 6187 1190 117 41 0 chrX 143463104 143463301 -19136629 - L1MA9 LINE L1 -1 6311 6107 215 186 0 17 chrX 143463487 143463546 -19136384 + (TA)n Simple_repeat Simple_repeat 1 58 0 2068 106 0 3 chrX 143463750 143464034 -19135896 + AluSx SINE Alu 5 287 -25 209 33 33 0 chrX 143464370 143464400 -19135530 + (TA)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chrX 143465555 143465584 -19134346 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chrX 143465729 143465759 -19134171 + AT_rich Low_complexity Low_complexity 1 30 0 2405 75 7 0 chrX 143466544 143466851 -19133079 - AluY SINE Alu -2 309 1 413 368 71 37 chrX 143467148 143467471 -19132459 - L2 LINE L2 -1 3271 2938 6315 234 91 54 chrX 143468164 143470091 -19129839 - HAL1 LINE L1 -109 2398 545 3392 164 57 14 chrX 143470091 143470754 -19129176 - L1MB7 LINE L1 -9 6175 5484 6315 234 91 54 chrX 143470754 143471108 -19128822 - HAL1 LINE L1 -1962 545 28 577 90 0 0 chrX 143471108 143471186 -19128744 - MADE1 DNA Mariner -2 78 1 6315 234 91 54 chrX 143471186 143471206 -19128724 - HAL1 LINE L1 -2479 28 10 34 0 0 0 chrX 143474633 143474667 -19125263 + AT_rich Low_complexity Low_complexity 1 34 0 9779 27 0 0 chrX 143474667 143476594 -19123336 - L1PA3 LINE L1 -3 6152 4226 3852 32 0 0 chrX 143476599 143477061 -19122869 - L1PA3 LINE L1 -2238 3908 3447 1719 46 0 0 chrX 143477056 143477275 -19122655 + L1P LINE L1 3192 3410 -2736 * 1235 129 5 5 chrX 143478497 143478707 -19121223 - L1PA16 LINE L1 -3 6163 5954 693 233 83 22 chrX 143479113 143479293 -19120637 - MIR SINE MIR -47 215 25 22 0 0 0 chrX 143479340 143479362 -19120568 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrX 143479911 143479937 -19119993 + AT_rich Low_complexity Low_complexity 1 26 0 1674 155 4 0 chrX 143481463 143481640 -19118290 - AluJb SINE Alu -18 294 114 189 0 0 0 chrX 143481640 143481661 -19118269 + (TAG)n Simple_repeat Simple_repeat 1 21 0 1674 155 4 0 chrX 143481661 143481754 -19118176 - AluJb SINE Alu -198 114 23 231 36 0 0 chrX 143482509 143482537 -19117393 + (TG)n Simple_repeat Simple_repeat 1 28 0 195 267 50 148 chrX 143484165 143484205 -19115725 - L2 LINE L2 -31 3241 3199 892 211 11 5 chrX 143484205 143484390 -19115540 + MER5A DNA MER1_type 4 189 0 195 267 50 148 chrX 143484390 143484450 -19115480 - L2 LINE L2 -73 3199 3151 272 354 39 89 chrX 143484545 143484802 -19115128 - L2 LINE L2 -1 3271 3028 284 288 18 45 chrX 143484972 143485083 -19114847 - MIR3 SINE MIR -41 167 60 1555 84 5 0 chrX 143486074 143486276 -19113654 + AluSp SINE Alu 105 307 -6 297 303 9 28 chrX 143486417 143486526 -19113404 - MIR SINE MIR -70 192 86 1791 183 68 86 chrX 143486539 143486639 -19113291 - Charlie1b DNA MER1_type -2240 521 421 2533 117 3 5 chrX 143486639 143487015 -19112915 - L1PA16 LINE L1 -9 6157 5783 1791 183 68 86 chrX 143487015 143487440 -19112490 - Charlie1b DNA MER1_type -2340 421 5 255 188 0 0 chrX 143489261 143489309 -19110621 - L2 LINE L2 -2 3311 3264 192 153 68 102 chrX 143489269 143489328 -19110602 - MIR SINE MIR -5 257 201 * 23 78 0 0 chrX 143490055 143490106 -19109824 + AT_rich Low_complexity Low_complexity 1 51 0 201 94 0 0 chrX 143490306 143490338 -19109592 + (CA)n Simple_repeat Simple_repeat 2 33 0 1208 191 130 12 chrX 143490884 143491230 -19108700 + L1ME3A LINE L1 2644 3030 -3116 * 3722 240 65 19 chrX 143491229 143492437 -19107493 + L1ME3A LINE L1 3833 5101 -1045 1405 97 10 0 chrX 143492437 143492643 -19107287 + L1PB1 LINE L1 5936 6143 -8 3722 240 65 19 chrX 143492643 143492674 -19107256 + L1ME3A LINE L1 5101 5129 -1017 21 82 0 0 chrX 143495166 143495215 -19104715 + AT_rich Low_complexity Low_complexity 1 49 0 2528 142 29 0 chrX 143496682 143497098 -19102832 - MSTA LTR MaLR 0 428 1 4732 48 3 0 chrX 143497265 143497853 -19102077 + L1PA7 LINE L1 5563 6152 -2 1945 146 3 26 chrX 143498728 143499037 -19100893 + AluJo SINE Alu 1 302 -10 551 321 83 9 chrX 143499434 143499783 -19100147 + L1ME3A LINE L1 5488 5862 -308 234 0 0 0 chrX 143500168 143500194 -19099736 + (T)n Simple_repeat Simple_repeat 1 26 0 673 238 6 12 chrX 143500595 143500759 -19099171 + MER63 DNA MER1_type 1 789 -273 2233 107 0 0 chrX 143500782 143501073 -19098857 + AluSx SINE Alu 6 296 -16 693 226 72 72 chrX 143501108 143501403 -19098527 + MER93b LTR ERV1 40 385 -18 2917 112 20 0 chrX 143501403 143501857 -19098073 - L1MA2 LINE L1 0 6304 5842 693 226 72 72 chrX 143501857 143501877 -19098053 + MER93b LTR ERV1 385 403 0 418 81 0 40 chrX 143502558 143502632 -19097298 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 1673 165 0 0 chrX 143502632 143502887 -19097043 - AluJb SINE Alu -17 295 41 617 118 0 10 chrX 143503365 143503467 -19096463 + (TTCC)n Simple_repeat Simple_repeat 3 103 0 2065 121 4 0 chrX 143503467 143503739 -19096191 - AluSx SINE Alu -39 273 1 220 227 0 0 chrX 143504542 143504586 -19095344 - L2 LINE L2 -3 3269 3226 483 241 113 0 chrX 143504828 143504969 -19094961 + MIR3 SINE MIR 43 199 -9 188 246 70 35 chrX 143505876 143505933 -19093997 - L2 LINE L2 -4 3268 3210 22 0 0 0 chrX 143505959 143505981 -19093949 + AT_rich Low_complexity Low_complexity 1 22 0 183 320 0 0 chrX 143506009 143506059 -19093871 + L2 LINE L2 3223 3272 0 372 312 75 45 chrX 143506067 143506266 -19093664 - MIR3 SINE MIR -1 207 3 1982 131 0 38 chrX 143506409 143506723 -19093207 - AluSx SINE Alu -10 302 1 203 60 80 0 chrX 143507506 143507556 -19092374 + (TA)n Simple_repeat Simple_repeat 1 54 0 219 214 95 0 chrX 143510745 143510787 -19089143 - L2 LINE L2 -19 3253 3208 2062 75 86 0 chrX 143510864 143511132 -19088798 - AluSc SINE Alu -18 291 1 479 296 141 19 chrX 143511257 143511470 -19088460 - MIR SINE MIR -10 252 14 366 303 86 19 chrX 143511480 143511642 -19088288 + MER5A DNA MER1_type 10 182 -7 2291 243 98 78 chrX 143511715 143512638 -19087292 - MER45C DNA AcHobo 0 953 13 197 255 137 134 chrX 143515091 143515479 -19084451 - L3 LINE CR1 -11 1566 1178 21 0 0 0 chrX 143516543 143516564 -19083366 + AT_rich Low_complexity Low_complexity 1 21 0 1914 56 0 0 chrX 143516571 143516805 -19083125 - AluY SINE Alu -9 302 69 1102 172 10 19 chrX 143517675 143517884 -19082046 + MER3 DNA MER1_type 2 208 -1 1949 170 0 13 chrX 143518191 143518497 -19081433 - AluJb SINE Alu -10 302 1 846 186 35 23 chrX 143518497 143518663 -19081267 - MER5A DNA MER1_type -6 183 16 3122 108 89 4 chrX 143520569 143521040 -19078890 + MER9 LTR ERVK 1 511 0 1898 233 88 18 chrX 143522331 143522936 -19076994 - L1ME3A LINE L1 -7 6163 5517 483 230 48 12 chrX 143522934 143523099 -19076831 - L1ME3A LINE L1 -897 5249 5079 * 1763 239 86 35 chrX 143523144 143523867 -19076063 - L1ME3A LINE L1 -1206 4940 4181 3084 93 7 5 chrX 143524044 143524486 -19075444 + L1PA14 LINE L1 5718 6160 -1 239 308 14 0 chrX 143524723 143524869 -19075061 - L1ME3A LINE L1 -3789 2357 2210 341 328 51 35 chrX 143525474 143525730 -19074200 + LTR16C LTR ERVL 158 417 -74 225 0 0 0 chrX 143526029 143526054 -19073876 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 186 241 148 0 chrX 143526534 143526588 -19073342 - L2 LINE L2 -4 3268 3207 418 298 119 12 chrX 143528820 143528988 -19070942 + MIR SINE MIR 8 193 -69 453 320 34 11 chrX 143531030 143531208 -19068722 + MIR SINE MIR 9 190 -72 1368 264 45 63 chrX 143532119 143532672 -19067258 - L2 LINE L2 -4 3309 2777 238 182 0 23 chrX 143534069 143534113 -19065817 + CT-rich Low_complexity Low_complexity 3 45 0 261 206 22 43 chrX 143534132 143534224 -19065706 + L1MC4 LINE L1 6614 6703 -1339 311 217 0 31 chrX 143534224 143534292 -19065638 + (TA)n Simple_repeat Simple_repeat 1 65 -60 1987 135 47 29 chrX 143534292 143534633 -19065297 + MER7A DNA MER2_type 2 346 0 311 217 0 31 chrX 143534633 143534693 -19065237 + (TA)n Simple_repeat Simple_repeat 65 125 0 197 116 0 47 chrX 143534840 143534883 -19065047 + (GGAAA)n Simple_repeat Simple_repeat 3 43 0 2180 91 7 27 chrX 143535038 143535336 -19064594 - AluSx SINE Alu -20 292 1 2050 161 12 3 chrX 143535612 143535953 -19063977 + MER2 DNA MER2_type 1 344 0 433 240 30 105 chrX 143535959 143536159 -19063771 + MIR SINE MIR 14 198 -64 237 118 39 78 chrX 143536708 143536759 -19063171 - L2 LINE L2 -10 3262 3214 266 344 62 0 chrX 143536767 143536895 -19063035 + L2 LINE L2 2162 2297 -1017 715 309 53 8 chrX 143536916 143537162 -19062768 - MIR SINE MIR 0 262 6 413 355 105 20 chrX 143537581 143537925 -19062005 + L2 LINE L2 2898 3270 -2 424 142 6 0 chrX 143539948 143540031 -19059899 - L1MC/D LINE L1 -782 5577 5517 1615 242 50 41 chrX 143540039 143540701 -19059229 - L1MC/D LINE L1 -840 5306 4639 17776 34 1 0 chrX 143540705 143543722 -19056208 - L1PA4 LINE L1 -2 6153 3136 202 333 24 63 chrX 143743981 143744107 -18855823 + MIR SINE MIR 132 252 -10 219 262 66 0 chrX 143745147 143745208 -18854722 + MIR SINE MIR 85 149 -113 239 257 168 10 chrX 143747943 143748044 -18851886 - MIR3 SINE MIR -88 120 4 227 136 17 0 chrX 143748318 143748377 -18851553 + T-rich Low_complexity Low_complexity 1 60 0 795 175 84 7 chrX 143750748 143750902 -18849028 - FRAM SINE Alu 0 166 1 1167 116 6 0 chrX 143750914 143751078 -18848852 - AluSg/x SINE Alu -14 298 134 821 278 31 0 chrX 143751508 143751744 -18848186 - MIR SINE MIR -14 248 5 2162 91 56 0 chrX 143751832 143752119 -18847811 - AluSg SINE Alu -7 303 1 505 280 0 8 chrX 143752230 143752348 -18847582 + MIR SINE MIR 28 144 -118 186 43 0 0 chrX 143752770 143752793 -18847137 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 382 246 88 18 chrX 143752793 143752907 -18847023 - L2 LINE L2 -17 3296 3175 887 213 0 0 chrX 143753071 143753245 -18846685 - FRAM SINE Alu -2 174 1 195 282 191 0 chrX 143753249 143753359 -18846571 - L3 LINE CR1 -466 1111 981 313 275 25 0 chrX 143753891 143753971 -18845959 - L3 LINE CR1 -651 926 845 665 124 39 65 chrX 143754548 143754644 -18845286 + L1MA9 LINE L1 6164 6256 -56 1939 152 0 13 chrX 143754644 143754947 -18844983 - AluJo SINE Alu -13 299 1 665 124 39 65 chrX 143754947 143755003 -18844927 + L1MA9 LINE L1 6256 6312 0 254 321 0 24 chrX 143755355 143755384 -18844546 + MIR3 SINE MIR 122 150 -58 2249 85 6 25 chrX 143755384 143755702 -18844228 - AluSx SINE Alu 0 312 1 254 321 0 24 chrX 143755702 143755756 -18844174 + MIR3 SINE MIR 150 203 -5 2257 121 0 3 chrX 143755938 143756245 -18843685 + AluSq SINE Alu 1 306 -7 835 316 38 24 chrX 143757113 143757588 -18842342 - MER115 DNA AcHobo -162 531 24 2451 170 19 42 chrX 143757859 143757904 -18842026 + L1MB7 LINE L1 5585 5630 -554 2454 70 0 0 chrX 143757904 143758203 -18841727 - AluSg SINE Alu -11 299 1 2451 170 19 42 chrX 143758203 143758385 -18841545 + L1MB7 LINE L1 5630 5815 -369 1529 178 0 11 chrX 143758385 143758655 -18841275 + AluJb SINE Alu 29 295 -17 2451 170 19 42 chrX 143758655 143758735 -18841195 + L1MB7 LINE L1 5815 5895 -289 2147 127 7 0 chrX 143758735 143759043 -18840887 + AluSq SINE Alu 1 310 -3 2451 170 19 42 chrX 143759043 143759299 -18840631 + L1MB7 LINE L1 5895 6137 -47 481 278 133 6 chrX 143759456 143759629 -18840301 - MIR SINE MIR -50 212 18 288 267 12 0 chrX 143759732 143759818 -18840112 - Charlie7 DNA MER1_type 0 2612 2526 287 151 132 66 chrX 143759858 143759964 -18839966 - Charlie7 DNA MER1_type -2486 126 14 890 253 126 16 chrX 143761554 143761918 -18838012 + MLT1L LTR MaLR 195 598 -17 258 239 134 0 chrX 143762254 143762321 -18837609 - MIR3 SINE MIR -50 158 83 334 232 53 32 chrX 143763080 143763175 -18836755 - MIR3 SINE MIR -17 191 95 236 167 42 0 chrX 143764077 143764125 -18835805 + MER94 DNA DNA 1 50 -84 28 0 0 0 chrX 143764126 143764154 -18835776 + AT_rich Low_complexity Low_complexity 1 28 0 229 240 260 21 chrX 143764547 143764643 -18835287 + MIR3 SINE MIR 49 167 -41 238 230 30 26 chrX 143766517 143766788 -18833142 + (TA)n Simple_repeat Simple_repeat 1 272 0 221 325 127 0 chrX 143767136 143767262 -18832668 + MIR SINE MIR 65 206 -56 2456 76 0 0 chrX 143768151 143768455 -18831475 + AluSx SINE Alu 1 304 -8 38679 68 4 6 chrX 143768803 143774963 -18824967 - L1PA6 LINE L1 -6 6148 8 761 206 5 0 chrX 143775210 143775373 -18824557 + L1MC/D LINE L1 5492 5660 -496 366 258 86 37 chrX 143775548 143775792 -18824138 + L1MDa LINE L1 1883 2138 -4402 * 424 282 61 0 chrX 143775773 143775936 -18823994 - L1M4 LINE L1 -2234 3912 3740 1188 234 90 29 chrX 143776012 143776533 -18823397 + L1MDa LINE L1 3327 3879 -2661 22 99 0 0 chrX 143776533 143776604 -18823326 + AT_rich Low_complexity Low_complexity 1 71 0 571 285 43 6 chrX 143776622 143776948 -18822982 + L1M4 LINE L1 4933 5270 -876 337 126 184 0 chrX 143777022 143777125 -18822805 + L1MA9 LINE L1 5303 5424 -935 2718 117 9 68 chrX 143777210 143777530 -18822400 + L1MA9 LINE L1 5794 6070 -242 1655 191 0 27 chrX 143777530 143777828 -18822102 + AluJb SINE Alu 2 291 -21 2718 117 9 68 chrX 143777828 143778055 -18821875 + L1MA9 LINE L1 6070 6309 -3 642 200 0 0 chrX 143778151 143778266 -18821664 - L1MC1 LINE L1 -21 6312 6198 6363 241 30 10 chrX 143778271 143779709 -18820221 - L1M4 LINE L1 -1851 4295 2805 2203 97 0 0 chrX 143779709 143780025 -18819905 + AluSc SINE Alu 1 316 0 6363 241 30 10 chrX 143780025 143780520 -18819410 - L1M4 LINE L1 -3341 2805 2321 451 216 25 88 chrX 143780544 143780748 -18819182 + L1M4 LINE L1 4757 4947 -1199 768 267 118 8 chrX 143780767 143780919 -18819011 + L2 LINE L2 2247 2381 -933 1805 213 43 0 chrX 143780919 143781267 -18818663 - MLT1A1 LTR MaLR 0 365 3 768 267 118 8 chrX 143781267 143781376 -18818554 + L2 LINE L2 2381 2537 -777 4395 165 4 0 chrX 143781380 143782157 -18817773 - Tigger1 DNA MER2_type -20 2398 1619 7947 141 24 23 chrX 143782164 143782344 -18817586 - Tigger1 DNA MER2_type -922 1496 1318 3068 104 0 9 chrX 143782344 143782796 -18817134 - L1PA13 LINE L1 -5 6158 5711 7947 141 24 23 chrX 143782796 143783096 -18816834 - Tigger1 DNA MER2_type -1100 1318 1020 2409 120 13 16 chrX 143783096 143783472 -18816458 + THE1C LTR MaLR 1 375 0 7947 141 24 23 chrX 143783472 143784435 -18815495 - Tigger1 DNA MER2_type -1398 1020 51 307 258 0 82 chrX 143784464 143784561 -18815369 - L1MC4 LINE L1 -1339 6703 6615 182 61 0 61 chrX 143784568 143784601 -18815329 + (CATATA)n Simple_repeat Simple_repeat 4 34 0 241 294 0 0 chrX 143784609 143784694 -18815236 + L1MC4 LINE L1 6619 6703 -1339 267 140 0 0 chrX 143784699 143784749 -18815181 + (TA)n Simple_repeat Simple_repeat 1 50 0 243 208 0 0 chrX 143784756 143784804 -18815126 - Tigger1 DNA MER2_type -2370 48 1 1185 275 28 85 chrX 143784804 143785066 -18814864 + L2 LINE L2 2534 2810 -503 2251 108 26 0 chrX 143785066 143785371 -18814559 - AluSq SINE Alu 0 313 1 1185 275 28 85 chrX 143785371 143785529 -18814401 + L2 LINE L2 2810 2976 -337 2089 144 123 5 chrX 143785529 143785912 -18814018 + MSTA LTR MaLR 1 428 0 1185 275 28 85 chrX 143785912 143786288 -18813642 + L2 LINE L2 2976 3310 -3 282 263 7 59 chrX 143786307 143786459 -18813471 + L1MC/D LINE L1 5706 5849 -1959 274 328 61 8 chrX 143786682 143786813 -18813117 + L1ME LINE L1 5534 5671 -2137 362 264 19 71 chrX 143786931 143787086 -18812844 + MIR SINE MIR 113 259 -3 333 214 143 27 chrX 143787098 143787210 -18812720 + L1ME LINE L1 5656 5780 -341 1133 191 22 43 chrX 143787277 143787507 -18812423 + AluJb SINE Alu 87 311 -1 28 71 0 0 chrX 143787768 143787824 -18812106 + AT_rich Low_complexity Low_complexity 1 56 0 480 164 62 36 chrX 143787862 143788057 -18811873 + L1MEc LINE L1 1384 1583 -5242 1498 137 0 0 chrX 143788058 143788263 -18811667 + AluSg SINE Alu 1 205 -105 762 136 0 0 chrX 143788263 143788373 -18811557 + AluSp/q SINE Alu 166 275 -38 234 0 0 0 chrX 143788381 143788407 -18811523 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 457 301 56 6 chrX 143788412 143788768 -18811162 + L1MD1 LINE L1 2350 2631 -4832 7519 38 0 0 chrX 143788855 143790197 -18809733 + L1PA5 LINE L1 4810 6151 -3 978 226 36 0 chrX 143790220 143790472 -18809458 + L1MD3 LINE L1 7714 7974 -21 234 0 0 0 chrX 143790577 143790603 -18809327 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1076 168 5 11 chrX 143790604 143790789 -18809141 - AluJo SINE Alu -44 268 85 1883 193 6 3 chrX 143790789 143791146 -18808784 + MLT1A1 LTR MaLR 8 365 0 2223 254 40 20 chrX 143791151 143792474 -18807456 + L1MD1 LINE L1 3301 4669 -2896 14056 181 43 26 chrX 143792487 143798117 -18801813 + L1M3e LINE L1 97 5787 -1778 695 129 0 0 chrX 143798139 143798240 -18801690 + L1PA13 LINE L1 6031 6131 -32 1918 141 162 8 chrX 143798243 143798613 -18801317 - MSTA LTR MaLR -1 427 1 6304 179 7 20 chrX 143798613 143799761 -18800169 - MSTA-int LTR MaLR 0 1580 448 5576 186 35 31 chrX 143799758 143800712 -18799218 + L1MD1 LINE L1 5838 6420 -1241 * 2253 159 49 7 chrX 143800712 143801120 -18798810 + MSTB LTR MaLR 1 425 -1 5576 186 35 31 chrX 143801120 143802362 -18797568 + L1MD1 LINE L1 6420 7656 -5 2657 215 36 73 chrX 143802333 143802956 -18796974 + L1ME1 LINE L1 6708 7328 -257 * 240 158 0 0 chrX 143802956 143802994 -18796936 + MER58 DNA MER1_type 2383 2420 0 2657 215 36 73 chrX 143802994 143803240 -18796690 + L1ME1 LINE L1 7328 7581 -4 282 341 30 36 chrX 143803265 143803432 -18796498 + L3 LINE CR1 119 284 -1293 203 152 0 0 chrX 143803485 143803518 -18796412 + (TG)n Simple_repeat Simple_repeat 2 34 0 704 194 0 8 chrX 143803563 143803692 -18796238 - MER5B DNA MER1_type 0 178 51 199 257 171 46 chrX 143803565 143803717 -18796213 + MER5A DNA MER1_type 17 187 -2 * 339 308 91 59 chrX 143804168 143804301 -18795629 + L3 LINE CR1 682 809 -768 1953 141 72 40 chrX 143804301 143804678 -18795252 + MLT1B LTR MaLR 1 389 -1 339 308 91 59 chrX 143804678 143804797 -18795133 + L3 LINE CR1 809 942 -635 379 303 0 78 chrX 143804800 143805018 -18794912 - LTR67 LTR ERVL 0 557 357 386 361 155 12 chrX 143805225 143805477 -18794453 + L3 LINE CR1 1010 1297 -280 530 271 59 35 chrX 143805514 143805684 -18794246 + L3 LINE CR1 1212 1385 -192 1805 47 0 4 chrX 143805833 143806065 -18793865 - L1PA5 LINE L1 -3 6151 5921 519 176 28 0 chrX 143806353 143806461 -18793469 - L1PA16 LINE L1 -1 6165 6055 226 379 107 7 chrX 143806461 143806601 -18793329 + L3 LINE CR1 1354 1507 -70 205 218 18 18 chrX 143807190 143807245 -18792685 + GA-rich Low_complexity Low_complexity 3 57 0 198 399 43 6 chrX 143808372 143808535 -18791395 - L2 LINE L2 -16 3256 3088 572 132 69 21 chrX 143808855 143808999 -18790931 - Charlie5 DNA MER1_type -49 2563 2413 1018 128 243 31 chrX 143808999 143809225 -18790705 - Tigger2a DNA MER2_type -1 443 170 496 182 100 9 chrX 143809214 143809324 -18790606 - Tigger2a DNA MER2_type -314 120 1 * 264 246 80 65 chrX 143809326 143809554 -18790376 - L2 LINE L2 -1145 2169 1880 662 65 11 0 chrX 143809558 143809650 -18790280 + (TTC)n Simple_repeat Simple_repeat 2 94 0 1332 66 2 1 chrX 143809650 143809837 -18790093 - L1PA7 LINE L1 -27 6127 5939 439 297 7 7 chrX 143809837 143809982 -18789948 - L2 LINE L2 -1444 1870 1726 548 320 67 9 chrX 143810241 143810466 -18789464 - MIR SINE MIR 0 262 25 567 241 80 0 chrX 143811356 143811509 -18788421 + MIR SINE MIR 29 192 -70 2600 61 0 0 chrX 143812118 143812429 -18787501 - AluY SINE Alu 0 311 1 342 188 25 12 chrX 143812450 143812530 -18787400 + L1MC4a LINE L1 6612 6692 -1116 730 254 45 12 chrX 143812533 143812791 -18787139 + L1MC5 LINE L1 6991 7255 -733 308 309 16 32 chrX 143812791 143812917 -18787013 + L1MC4 LINE L1 7324 7447 -595 495 308 100 31 chrX 143812979 143813561 -18786369 + L1MC5 LINE L1 7314 7935 -26 731 244 80 0 chrX 143813577 143813753 -18786177 + MIR SINE MIR 25 214 -48 336 102 0 0 chrX 143813781 143813830 -18786100 + (CAT)n Simple_repeat Simple_repeat 2 50 0 1045 184 87 5 chrX 143813887 143814094 -18785836 - MER58A DNA MER1_type 0 224 1 29 0 0 0 chrX 143814418 143814447 -18785483 + AT_rich Low_complexity Low_complexity 1 29 0 342 91 0 0 chrX 143815982 143816037 -18783893 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 505 320 97 13 chrX 143817530 143817758 -18782172 - L3 LINE CR1 -2 1575 1329 375 309 0 0 chrX 143817961 143818058 -18781872 - MIR SINE MIR -164 98 2 485 245 51 109 chrX 143818099 143818356 -18781574 + L2 LINE L2 3067 3308 -5 247 396 13 7 chrX 143818998 143819147 -18780783 - MIR3 SINE MIR -32 176 27 873 269 33 0 chrX 143821666 143821878 -18778052 + MIR SINE MIR 5 223 -39 4621 135 58 10 chrX 143822145 143822959 -18776971 - L1MB7 LINE L1 -8 6176 5324 2105 106 0 3 chrX 143823131 143823414 -18776516 + AluSg SINE Alu 1 282 -28 450 0 0 0 chrX 143823417 143823467 -18776463 + (CTA)n Simple_repeat Simple_repeat 1 50 0 845 265 9 30 chrX 143823728 143823958 -18775972 - MIR SINE MIR -12 250 26 363 281 73 0 chrX 143823982 143824078 -18775852 - MIR SINE MIR -1 261 159 459 306 55 25 chrX 143824309 143824508 -18775422 - MIR SINE MIR -50 212 8 27 0 0 0 chrX 143825475 143825502 -18774428 + AT_rich Low_complexity Low_complexity 1 27 0 706 249 58 81 chrX 143825529 143825646 -18774284 - HsTC2 DNA Tc2 -1 1897 1779 279 0 0 0 chrX 143825646 143825677 -18774253 + (TG)n Simple_repeat Simple_repeat 2 32 0 2190 98 4 0 chrX 143825678 143825955 -18773975 - AluSq SINE Alu -35 278 1 706 249 58 81 chrX 143825955 143826281 -18773649 - HsTC2 DNA Tc2 -118 1780 1286 263 296 0 0 chrX 143826883 143826937 -18772993 - MER45A DNA AcHobo 0 178 125 * 1267 253 58 125 chrX 143826925 143827418 -18772512 - MER45C DNA AcHobo -310 643 207 2368 86 0 0 chrX 143827418 143827721 -18772209 - AluSg SINE Alu -7 303 1 1267 253 58 125 chrX 143827721 143827916 -18772014 - MER45C DNA AcHobo -746 207 1 260 216 126 24 chrX 143829247 143829414 -18770516 + L1MC5 LINE L1 7411 7594 -367 467 256 0 0 chrX 143829429 143829546 -18770384 - L1MC4a LINE L1 -532 7276 7160 395 181 28 0 chrX 143829548 143829620 -18770310 - L1MC4 LINE L1 -1035 7007 6934 2381 86 0 3 chrX 143829624 143829927 -18770003 - AluSp SINE Alu -11 302 1 22 0 0 0 chrX 143830027 143830049 -18769881 + AT_rich Low_complexity Low_complexity 1 22 0 2117 105 3 20 chrX 143830160 143830464 -18769466 + AluSx SINE Alu 1 299 -13 2183 88 26 19 chrX 143830468 143830775 -18769155 + AluSp SINE Alu 1 309 -4 339 266 18 0 chrX 143830787 143830900 -18769030 + L1MC4 LINE L1 7926 8040 -2 913 225 102 30 chrX 143830903 143831276 -18768654 + L1MC5 LINE L1 7507 7906 -55 230 147 0 0 chrX 143831459 143831493 -18768437 - tRNA-Arg-AGA tRNA tRNA -42 34 1 226 296 19 0 chrX 143831511 143831565 -18768365 + L2 LINE L2 3148 3202 -70 309 333 28 34 chrX 143831602 143831779 -18768151 + L1 LINE L1 3339 3514 -2632 1020 281 102 26 chrX 143831882 143832490 -18767440 + L1 LINE L1 3623 4276 -1870 433 44 29 0 chrX 143832743 143832811 -18767119 - L1MA7 LINE L1 -2 6289 6220 451 150 20 10 chrX 143832811 143832911 -18767019 + L1 LINE L1 4403 4503 -1643 385 323 74 24 chrX 143832971 143833268 -18766662 + L1ME LINE L1 4944 5255 -891 386 268 14 121 chrX 143833298 143833418 -18766512 + L1ME LINE L1 5270 5401 -720 982 204 41 32 chrX 143833418 143833639 -18766291 + MER58A DNA MER1_type 1 223 -1 386 268 14 121 chrX 143833639 143834049 -18765881 + L1ME LINE L1 5401 5727 -394 2340 97 0 0 chrX 143834050 143834350 -18765580 + AluSp SINE Alu 1 300 -13 216 241 35 0 chrX 143834393 143834451 -18765479 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 698 246 90 6 chrX 143834867 143835034 -18764896 - MER91A DNA MER1_type 0 196 16 678 277 65 61 chrX 143835686 143836199 -18763731 + L1ME LINE L1 5268 5794 -327 26 0 0 0 chrX 143836380 143836406 -18763524 + AT_rich Low_complexity Low_complexity 1 26 0 274 394 65 5 chrX 143836549 143836765 -18763165 + L2 LINE L2 1746 1974 -1340 320 160 130 60 chrX 143837006 143837106 -18762824 - MER94 DNA DNA -27 107 1 380 308 75 47 chrX 143837198 143837558 -18762372 + L1ME2 LINE L1 1234 1603 -4939 2705 221 25 16 chrX 143837624 143838306 -18761624 - L1ME3 LINE L1 -10 6152 5465 2502 255 98 28 chrX 143838288 143839422 -18760508 + L1ME2 LINE L1 4080 5134 -1528 * 7656 25 3 0 chrX 143839422 143840556 -18759374 + L1PA4 LINE L1 5019 6155 0 2502 255 98 28 chrX 143840556 143840716 -18759214 + L1ME2 LINE L1 5134 5281 -1381 3212 157 5 16 chrX 143840716 143840966 -18758964 + L1MB7 LINE L1 5595 5846 -338 3588 128 6 0 chrX 143840966 143841490 -18758440 + MER1A DNA MER1_type 1 527 0 3212 157 5 16 chrX 143841490 143841819 -18758111 + L1MB7 LINE L1 5846 6168 -16 2502 255 98 28 chrX 143841819 143842669 -18757261 + L1ME2 LINE L1 5281 6386 -276 910 271 104 35 chrX 143842753 143843412 -18756518 + L1ME LINE L1 4456 5215 -949 790 176 30 12 chrX 143843412 143843577 -18756353 + L1MB3 LINE L1 6008 6175 -8 910 271 104 35 chrX 143843577 143843900 -18756030 + L1ME LINE L1 5215 5514 -650 334 306 48 44 chrX 143843966 143844172 -18755758 + L1MC/D LINE L1 5339 5545 -2263 2251 108 13 0 chrX 143844226 143844533 -18755397 - AluSx SINE Alu -1 311 1 6530 176 14 53 chrX 143844602 143845840 -18754090 + L1MA4A LINE L1 3018 4173 -1973 2470 73 0 0 chrX 143845840 143846141 -18753789 + AluY SINE Alu 1 301 -10 6530 176 14 53 chrX 143846141 143846597 -18753333 + L1MA4A LINE L1 4173 4645 -1501 504 142 42 0 chrX 143846597 143846707 -18753223 + MER61E LTR ERV1 1 118 -484 1474 153 55 101 chrX 143846886 143847284 -18752646 + LTR25 LTR ERV1 415 794 0 5599 142 28 13 chrX 143847301 143848942 -18750988 + L1MA4A LINE L1 4642 6303 0 2232 104 0 19 chrX 143849249 143849566 -18750364 - AluSq SINE Alu -2 311 1 926 168 84 117 chrX 143849666 143849999 -18749931 - MER33 DNA MER1_type -2 322 1 1065 200 138 34 chrX 143850010 143850365 -18749565 - MLT1D LTR MaLR -113 392 1 3182 155 51 9 chrX 143850365 143851048 -18748882 - MER45R DNA AcHobo -162 1419 708 6816 163 10 3 chrX 143851053 143851522 -18748408 - L1MA4 LINE L1 -35 6265 5800 315 0 0 0 chrX 143851522 143851557 -18748373 + (TG)n Simple_repeat Simple_repeat 2 36 0 6816 163 10 3 chrX 143851557 143853265 -18746665 - L1MA4 LINE L1 -500 5800 4074 2042 241 33 67 chrX 143853267 143853996 -18745934 - MER45R DNA AcHobo -876 705 2 208 244 122 12 chrX 143854267 143854349 -18745581 - MIR SINE MIR -75 187 97 240 247 102 43 chrX 143854727 143854913 -18745017 + L1M4 LINE L1 2841 3037 -3109 519 195 12 27 chrX 143854941 143855105 -18744825 + L1MC5 LINE L1 7095 7217 -744 * 696 242 100 32 chrX 143855099 143855425 -18744505 + L1MC5 LINE L1 7243 7519 -442 1750 181 3 0 chrX 143855425 143855713 -18744217 + AluJo SINE Alu 1 289 -23 696 242 100 32 chrX 143855713 143855875 -18744055 + L1MC5 LINE L1 7519 7669 -292 1797 181 0 19 chrX 143855956 143856271 -18743659 - AluJo SINE Alu -3 309 1 225 278 19 0 chrX 143856464 143856518 -18743412 + L2 LINE L2 3250 3304 -9 342 0 0 0 chrX 143858169 143858207 -18741723 + (TG)n Simple_repeat Simple_repeat 2 39 0 323 298 102 48 chrX 143858690 143858892 -18741038 - MIR SINE MIR -10 252 37 279 0 0 0 chrX 143859229 143859260 -18740670 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 211 342 112 25 chrX 143861317 143861478 -18738452 + MIR3 SINE MIR 28 202 -6 250 185 0 37 chrX 143861768 143861822 -18738108 - MIR SINE MIR 0 262 211 559 229 178 42 chrX 143861844 143862071 -18737859 + L1ME4a LINE L1 5735 6024 -97 802 254 6 0 chrX 143862071 143862248 -18737682 - MER45A DNA AcHobo 0 178 1 559 229 178 42 chrX 143862248 143862357 -18737573 + L1ME4a LINE L1 6024 6117 -4 543 248 25 45 chrX 143862898 143863055 -18736875 + L2 LINE L2 3158 3311 -2 485 153 0 24 chrX 143863083 143863168 -18736762 - FLAM_A SINE Alu -7 135 53 2359 97 0 3 chrX 143863922 143864233 -18735697 + AluSg SINE Alu 1 310 0 597 264 42 0 chrX 143864964 143865108 -18734822 + MIR SINE MIR 69 218 -44 2119 101 0 77 chrX 143865921 143866247 -18733683 + AluSx SINE Alu 1 301 -11 1110 223 5 0 chrX 143866848 143867059 -18732871 + AluJo SINE Alu 1 212 -100 347 301 48 62 chrX 143867072 143867218 -18732712 + L2 LINE L2 3123 3266 -6 2335 64 0 3 chrX 143867567 143867903 -18732027 + AluY SINE Alu 1 335 0 2333 81 7 3 chrX 143868057 143868365 -18731565 + AluY SINE Alu 1 309 -2 332 320 78 0 chrX 143868365 143868493 -18731437 - MIR SINE MIR -83 179 42 397 190 13 13 chrX 143868554 143868633 -18731297 + MER81 DNA DNA 4 82 -32 383 179 202 0 chrX 143868650 143868734 -18731196 + L2 LINE L2 3213 3313 0 2752 29 0 0 chrX 143870576 143870884 -18729046 - AluY SINE Alu -3 308 1 21 0 0 0 chrX 143871246 143871267 -18728663 + AT_rich Low_complexity Low_complexity 1 21 0 2196 127 0 13 chrX 143871336 143871644 -18728286 - AluSx SINE Alu -7 305 2 285 221 117 13 chrX 143872228 143872305 -18727625 + MIR SINE MIR 43 127 -81 609 237 147 6 chrX 143873426 143873582 -18726348 + MER5A DNA MER1_type 10 187 -2 337 176 73 0 chrX 143873591 143873659 -18726271 - MER58B DNA MER1_type 0 341 269 195 107 0 71 chrX 143873665 143873721 -18726209 + (TCC)n Simple_repeat Simple_repeat 1 52 0 442 260 8 24 chrX 143873937 143874064 -18725866 + MIR SINE MIR 92 216 -46 796 251 69 13 chrX 143874420 143874651 -18725279 - MIR SINE MIR -15 247 4 980 148 69 35 chrX 143876428 143876630 -18723300 + MER3 DNA MER1_type 1 209 0 313 369 47 13 chrX 143877023 143877172 -18722758 + MIR SINE MIR 29 182 -80 1704 96 0 16 chrX 143877449 143877699 -18722231 + THE1C LTR MaLR 1 246 -129 1544 143 19 8 chrX 143877699 143877965 -18721965 + Tigger3(Golem) DNA MER2_type 2770 3038 0 480 284 0 14 chrX 143878148 143878296 -18721634 + L1ME3 LINE L1 6010 6155 -7 232 256 0 105 chrX 143878383 143878469 -18721461 - MIR SINE MIR -102 106 30 201 74 0 0 chrX 143878578 143878605 -18721325 + (T)n Simple_repeat Simple_repeat 1 27 0 2088 113 7 0 chrX 143879167 143879494 -18720436 + AluSx SINE Alu 1 329 0 22 35 0 0 chrX 143880501 143880530 -18719400 + AT_rich Low_complexity Low_complexity 1 29 0 560 38 0 25 chrX 143881280 143881359 -18718571 - AluY SINE Alu -1 311 235 23 0 0 0 chrX 143881908 143881931 -18717999 + AT_rich Low_complexity Low_complexity 1 23 0 203 196 65 0 chrX 143883277 143883323 -18716607 + CT-rich Low_complexity Low_complexity 5 53 0 22 0 0 0 chrX 143883748 143883770 -18716160 + AT_rich Low_complexity Low_complexity 1 22 0 243 327 41 73 chrX 143884364 143884584 -18715346 - L2 LINE L2 -359 2955 2743 197 213 0 120 chrX 143884617 143884692 -18715238 - L2 LINE L2 -665 2649 2584 309 271 31 10 chrX 143884855 143884951 -18714979 + GA-rich Low_complexity Low_complexity 2 99 0 203 319 187 0 chrX 143885551 143885642 -18714288 + MIR SINE MIR 155 262 0 191 189 0 0 chrX 143885671 143885708 -18714222 + L2 LINE L2 3277 3313 0 480 218 28 155 chrX 143885860 143886112 -18713818 + L2 LINE L2 3067 3286 -27 297 0 0 0 chrX 143886116 143886149 -18713781 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 293 320 65 16 chrX 143886434 143886637 -18713293 - MIR SINE MIR -50 212 3 249 353 169 5 chrX 143886831 143887015 -18712915 + L2 LINE L2 2756 2969 -345 2133 128 0 0 chrX 143887770 143888076 -18711854 + AluSc SINE Alu 1 306 -3 257 0 104 0 chrX 143888082 143888130 -18711800 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 278 225 169 0 chrX 143888132 143888203 -18711727 - MIR3 SINE MIR -42 166 84 199 288 0 0 chrX 143888333 143888399 -18711531 + L2 LINE L2 2681 2746 -568 225 222 74 0 chrX 143888472 143888553 -18711377 + L1M4b LINE L1 83 169 -6690 209 302 0 0 chrX 143888622 143888685 -18711245 - MIR3 SINE MIR -45 163 101 1772 77 23 4 chrX 143889329 143889588 -18710342 - L1MA1 LINE L1 0 6302 6039 349 281 0 10 chrX 143889664 143889760 -18710170 - MIR3 SINE MIR -31 177 83 209 357 27 36 chrX 143890520 143890632 -18709298 + MIR SINE MIR 32 142 -66 215 250 14 42 chrX 143890687 143890759 -18709171 - MIR SINE MIR -4 258 189 870 191 0 0 chrX 143890759 143890906 -18709024 - FRAM SINE Alu -7 169 23 492 162 0 0 chrX 143890915 143890989 -18708941 - AluS SINE Alu -236 76 3 30 0 0 0 chrX 143891023 143891053 -18708877 + AT_rich Low_complexity Low_complexity 1 30 0 1679 178 0 32 chrX 143891053 143891367 -18708563 - AluJb SINE Alu -8 304 1 22 0 0 0 chrX 143891436 143891458 -18708472 + AT_rich Low_complexity Low_complexity 1 22 0 463 325 49 27 chrX 143892051 143892303 -18707627 - MIR SINE MIR -9 253 4 444 111 49 0 chrX 143892423 143892504 -18707426 - MER96 DNA MER1_type? 0 175 91 943 149 18 42 chrX 143892510 143892678 -18707252 + AluJo SINE Alu 1 164 -148 246 32 0 0 chrX 143892733 143892764 -18707166 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 323 265 12 12 chrX 143892924 143893007 -18706923 + MER96 DNA MER1_type? 84 166 -9 435 106 0 0 chrX 143893083 143893149 -18706781 + (ATG)n Simple_repeat Simple_repeat 3 68 0 462 228 94 59 chrX 143893165 143893367 -18706563 + L2 LINE L2 2994 3202 -111 1875 148 18 0 chrX 143894267 143894571 -18705359 - AluJb SINE Alu 0 309 1 2357 61 0 10 chrX 143898913 143899226 -18700704 - AluSx SINE Alu -2 310 1 189 0 0 0 chrX 143900886 143900907 -18699023 + (CG)n Simple_repeat Simple_repeat 1 21 0 * 315 0 0 0 chrX 143900906 143900941 -18698989 + (CA)n Simple_repeat Simple_repeat 1 35 0 264 111 0 0 chrX 143903524 143903569 -18696361 + (CCG)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chrX 143903690 143903719 -18696211 + GC_rich Low_complexity Low_complexity 1 29 0 316 260 8 8 chrX 143903790 143903917 -18696013 + (CCG)n Simple_repeat Simple_repeat 2 128 0 233 56 0 28 chrX 143904195 143904231 -18695699 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 308 250 28 56 chrX 143907202 143907310 -18692620 - MIR SINE MIR -59 149 45 321 275 107 30 chrX 143907667 143907929 -18692001 + L1ME4a LINE L1 5662 5943 -178 358 320 92 46 chrX 143908522 143908869 -18691061 + L2 LINE L2 2532 2894 -420 342 190 0 0 chrX 143909076 143909134 -18690796 + L2 LINE L2 2921 2978 -335 242 182 0 0 chrX 143909187 143909231 -18690699 - Alu SINE Alu -5 128 85 1088 200 0 22 chrX 143909231 143909456 -18690474 - AluJo SINE Alu -92 220 1 387 272 125 15 chrX 143909576 143909712 -18690218 + L2 LINE L2 3156 3306 -7 488 272 103 23 chrX 143909766 143909980 -18689950 + MIR SINE MIR 34 262 0 1085 148 6 44 chrX 143909991 143910173 -18689757 - FAM SINE Alu 0 175 1 2532 181 35 19 chrX 143910353 143911087 -18688843 + L1MB8 LINE L1 5096 5840 -338 * 5833 141 44 59 chrX 143911079 143911524 -18688406 + L1MC3 LINE L1 6615 7065 -720 213 39 0 0 chrX 143911524 143911550 -18688380 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 5833 141 44 59 chrX 143911550 143912273 -18687657 + L1MC3 LINE L1 7065 7767 -18 1803 162 10 0 chrX 143912273 143912570 -18687360 - AluSx SINE Alu -12 300 1 5833 141 44 59 chrX 143912570 143912589 -18687341 + L1MC3 LINE L1 7767 7785 0 1652 152 18 21 chrX 143912598 143912928 -18687002 + L1MB8 LINE L1 5844 6172 -6 626 272 56 33 chrX 143913062 143913242 -18686688 - MIR3 SINE MIR -19 189 6 364 324 138 47 chrX 143913792 143914447 -18685483 - L2 LINE L2 0 3272 2555 2364 75 10 0 chrX 143914563 143914868 -18685062 - AluSg SINE Alu -2 308 1 236 162 0 0 chrX 143915159 143915196 -18684734 + L3 LINE CR1 1530 1566 -11 321 337 68 11 chrX 143915879 143916069 -18683861 + L2 LINE L2 2213 2413 -901 1382 198 139 110 chrX 143916177 143916718 -18683212 - MLT1F1 LTR MaLR 0 567 11 442 328 16 59 chrX 143916760 143917016 -18682914 + L2 LINE L2 2617 2861 -453 234 234 21 156 chrX 143917369 143917510 -18682420 - MIR3 SINE MIR -72 136 15 391 299 9 0 chrX 143918403 143918510 -18681420 + MIR SINE MIR 106 213 -49 528 199 132 29 chrX 143918682 143918818 -18681112 + MIR SINE MIR 81 230 -32 285 29 0 0 chrX 143918818 143918852 -18681078 + (TTA)n Simple_repeat Simple_repeat 2 35 0 340 286 48 0 chrX 143918957 143919041 -18680889 + MIR SINE MIR 21 108 -154 319 260 0 0 chrX 143919200 143919277 -18680653 + MIR SINE MIR 104 180 -82 2034 167 16 18 chrX 143919281 143919664 -18680266 - LTR52 LTR ERVL -39 382 1 199 200 0 55 chrX 143919665 143919720 -18680210 + MIR SINE MIR 174 225 -37 238 172 172 16 chrX 143919884 143919948 -18679982 + MIR3 SINE MIR 103 176 -32 2212 86 30 0 chrX 143920163 143920464 -18679466 - AluSp SINE Alu -3 310 1 408 336 246 8 chrX 143921360 143921738 -18678192 - L3 LINE CR1 -89 1488 1021 208 148 82 0 chrX 143921918 143921979 -18677951 + (TATAA)n Simple_repeat Simple_repeat 1 66 0 217 297 17 34 chrX 143921985 143922160 -18677770 + (TA)n Simple_repeat Simple_repeat 1 172 0 252 170 0 0 chrX 143922177 143922230 -18677700 + (TA)n Simple_repeat Simple_repeat 2 54 0 2281 79 3 0 chrX 143922253 143922545 -18677385 - AluSp SINE Alu -20 293 1 251 397 15 8 chrX 143922828 143922959 -18676971 + L3b LINE CR1 1325 1456 -127 1144 184 0 14 chrX 143923485 143923708 -18676222 - AluJo SINE Alu 0 312 93 216 0 0 0 chrX 143923708 143923732 -18676198 + (T)n Simple_repeat Simple_repeat 1 24 0 2250 98 3 0 chrX 143923775 143924081 -18675849 - AluSp SINE Alu -6 307 1 510 295 54 21 chrX 143924131 143924324 -18675606 - MIR3 SINE MIR -4 204 3 1649 260 73 15 chrX 143925079 143925748 -18674182 - L1M4 LINE L1 -818 5328 4621 327 181 7 181 chrX 143925748 143925903 -18674027 - MER97b DNA MER1_type? -925 128 1 235 270 0 0 chrX 143926524 143926587 -18673343 - LTR59 LTR ERV1 -301 296 234 905 216 157 4 chrX 143927414 143927669 -18672261 + MER58B DNA MER1_type 47 340 -1 259 204 0 0 chrX 143927669 143927723 -18672207 - L1M4 LINE L1 -1330 5210 5157 * 4105 227 55 15 chrX 143927720 143929373 -18670557 - L1MDa LINE L1 -2697 3843 2131 1305 193 8 12 chrX 143929376 143929630 -18670300 + MLT1C LTR MaLR 5 257 -210 815 202 30 182 chrX 143930005 143930603 -18669327 - L1M4 LINE L1 -1987 4159 3653 1510 190 88 18 chrX 143930603 143930793 -18669137 + MLT1C LTR MaLR 1 176 -291 234 91 0 0 chrX 143930793 143930826 -18669104 + (CA)n Simple_repeat Simple_repeat 2 34 0 1510 190 88 18 chrX 143930826 143930977 -18668953 + MLT1C LTR MaLR 176 366 -101 3605 152 2 20 chrX 143930993 143931385 -18668545 - MER41B LTR ERV1 -52 583 185 2107 142 35 14 chrX 143931385 143931752 -18668178 - THE1C LTR MaLR 0 375 1 10328 108 55 3 chrX 143931752 143933254 -18666676 - THE1C-int LTR MaLR 0 1580 2 1704 166 61 28 chrX 143933256 143933618 -18666312 - THE1C LTR MaLR -1 374 1 3605 152 2 20 chrX 143933618 143933815 -18666115 - MER41B LTR ERV1 -450 185 1 931 79 0 0 chrX 143933815 143933923 -18666007 + MLT1C LTR MaLR 360 467 0 3223 238 50 23 chrX 143933924 143933974 -18665956 - L1M4 LINE L1 -2492 3654 3607 2165 84 7 0 chrX 143933974 143934261 -18665669 - AluSp SINE Alu -4 309 21 3223 238 50 23 chrX 143934261 143934480 -18665450 - L1M4 LINE L1 -2539 3607 3395 1905 152 0 0 chrX 143934480 143934776 -18665154 + AluSx SINE Alu 3 298 -14 3223 238 50 23 chrX 143934776 143935564 -18664366 - L1M4 LINE L1 -2751 3395 2567 1582 172 10 26 chrX 143935582 143935885 -18664045 + AluJo SINE Alu 1 298 -14 1482 190 47 0 chrX 143935918 143936192 -18663738 - AluJb SINE Alu -25 287 1 808 187 0 0 chrX 143936192 143936326 -18663604 - AluJo SINE Alu -177 135 2 575 240 20 33 chrX 143936381 143936531 -18663399 + MIR SINE MIR 45 192 -70 201 271 75 28 chrX 143937749 143937856 -18662074 + MIR SINE MIR 116 227 -35 223 245 0 0 chrX 143938202 143938251 -18661679 + L2 LINE L2 1361 1409 -1905 1568 158 21 28 chrX 143938420 143938704 -18661226 - AluJb SINE Alu -30 282 1 1714 132 0 59 chrX 143938745 143939049 -18660881 - AluSx SINE Alu -16 296 11 376 355 40 34 chrX 143939060 143939356 -18660574 + L2 LINE L2 1617 1914 -1400 1641 239 70 25 chrX 143939362 143939848 -18660082 - MLT1J LTR MaLR -1 510 3 273 381 0 0 chrX 143940048 143940145 -18659785 + L2 LINE L2 3203 3299 -14 182 349 60 12 chrX 143940539 143940622 -18659308 - MER5B DNA MER1_type 0 178 92 189 107 0 0 chrX 143941414 143941442 -18658488 + (TCC)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chrX 143941838 143941859 -18658071 + AT_rich Low_complexity Low_complexity 1 21 0 214 404 30 15 chrX 143941898 143942096 -18657834 + L2 LINE L2 2738 2938 -376 484 280 32 16 chrX 143942617 143942742 -18657188 + MIR SINE MIR 16 142 -66 841 278 132 61 chrX 143942763 143943690 -18656240 - L2 LINE L2 0 3313 2319 815 271 52 26 chrX 143943702 143944012 -18655918 + L2 LINE L2 2995 3312 -1 264 341 18 24 chrX 143944019 143944186 -18655744 - L2 LINE L2 -997 2317 2152 * 274 291 146 0 chrX 143944177 143944280 -18655650 + MIR SINE MIR 138 255 -7 342 300 142 22 chrX 143944395 143944627 -18655303 + MIR SINE MIR 9 259 -3 2104 102 0 0 chrX 143944976 143945261 -18654669 + AluSc SINE Alu 1 285 -24 306 0 0 0 chrX 143945265 143945299 -18654631 + (TAA)n Simple_repeat Simple_repeat 1 34 0 243 0 0 0 chrX 143945299 143945326 -18654604 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1881 122 4 0 chrX 143945339 143945609 -18654321 + AluSq SINE Alu 14 284 -29 696 128 0 0 chrX 143945515 143945609 -18654321 + AluSp/q SINE Alu 191 342 0 420 35 0 17 chrX 143945609 143945667 -18654263 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2364 158 17 6 chrX 143945988 143946349 -18653581 - MLT1A1 LTR MaLR 0 365 1 736 277 98 0 chrX 143946728 143946952 -18652978 - MIR SINE MIR -13 249 4 391 261 155 12 chrX 143948412 143948573 -18651357 - MIR SINE MIR -70 192 9 351 237 142 24 chrX 143948940 143949109 -18650821 - L1ME4a LINE L1 -50 6071 5883 1565 170 28 28 chrX 143949128 143949416 -18650514 + AluJo SINE Alu 1 288 -24 581 246 55 44 chrX 143949427 143949610 -18650320 - MIR SINE MIR -58 204 20 1443 268 67 27 chrX 143949712 143950364 -18649566 - L2 LINE L2 0 3313 2624 225 292 64 128 chrX 143950477 143950775 -18649155 - L2 LINE L2 -97 3175 2897 1086 217 5 5 chrX 143950925 143951128 -18648802 - MER58A DNA MER1_type 0 224 22 730 244 124 5 chrX 143952156 143952365 -18647565 - MIR SINE MIR -25 237 4 219 343 14 0 chrX 143952670 143952743 -18647187 - MIR SINE MIR -126 136 63 1198 0 0 0 chrX 143952917 143953042 -18646888 - L1PA3 LINE L1 0 6155 6031 5200 219 98 11 chrX 143953363 143954492 -18645438 + L1M4b LINE L1 1 1228 -5631 387 322 108 31 chrX 143955018 143955341 -18644589 + L2 LINE L2 2314 2661 -653 707 299 79 65 chrX 143955420 143955838 -18644092 + L2 LINE L2 2843 3266 -6 219 305 8 47 chrX 143956000 143956128 -18643802 + L2 LINE L2 3158 3280 -33 365 138 17 0 chrX 143956679 143956737 -18643193 - U7 snRNA snRNA -3 60 2 651 339 20 20 chrX 143957302 143957556 -18642374 - MIR SINE MIR -7 255 2 374 216 29 49 chrX 143959253 143959355 -18640575 + MIR SINE MIR 163 262 0 1770 142 33 33 chrX 143959410 143959713 -18640217 - AluSx SINE Alu -9 303 1 490 258 15 53 chrX 143959972 143960104 -18639826 - L2 LINE L2 0 3272 3146 372 36 27 91 chrX 143960299 143960409 -18639521 + (CAAA)n Simple_repeat Simple_repeat 2 104 0 255 209 374 0 chrX 143960606 143960697 -18639233 - L2 LINE L2 0 3313 3189 321 302 21 94 chrX 143960747 143960877 -18639053 - L2 LINE L2 -308 3005 2892 2438 90 0 3 chrX 143960877 143961187 -18638743 + AluSx SINE Alu 1 309 -3 321 302 21 94 chrX 143961187 143961248 -18638682 - L2 LINE L2 -421 2892 2828 228 275 43 0 chrX 143961250 143961319 -18638611 - L2 LINE L2 -866 2448 2377 290 270 0 14 chrX 143961675 143961749 -18638181 + MLT1I LTR MaLR 99 171 -238 1691 175 3 28 chrX 143961988 143962279 -18637651 + AluJo SINE Alu 1 284 -28 184 184 122 20 chrX 143963531 143963580 -18636350 + L2 LINE L2 3214 3267 -5 2231 112 3 0 chrX 143963583 143963887 -18636043 - AluSp SINE Alu -8 305 1 2252 52 8 0 chrX 143964534 143964801 -18635129 + L1PA8 LINE L1 5904 6172 0 563 214 24 56 chrX 143964815 143964941 -18634989 + MER58A DNA MER1_type 1 122 0 1801 212 32 43 chrX 143965099 143965566 -18634364 + Charlie4a DNA MER1_type 39 500 -8 559 271 44 59 chrX 143965582 143965785 -18634145 - MIR SINE MIR -62 200 1 184 138 0 0 chrX 143965800 143965829 -18634101 - MIR SINE MIR -110 152 124 287 210 331 0 chrX 143965894 143966018 -18633912 - MIR SINE MIR -15 247 83 234 0 0 0 chrX 143966047 143966073 -18633857 + (TC)n Simple_repeat Simple_repeat 2 27 0 354 79 92 53 chrX 143967392 143967468 -18632462 - L1ME4a LINE L1 -1 6120 6042 467 260 47 41 chrX 143968698 143968867 -18631063 - MIR SINE MIR 0 262 93 1710 153 20 27 chrX 143968929 143969229 -18630701 - AluJb SINE Alu -14 298 1 186 43 0 0 chrX 143969265 143969288 -18630642 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 651 311 29 16 chrX 143969399 143969607 -18630323 - MIR SINE MIR -14 248 35 2318 72 10 3 chrX 143969607 143969899 -18630031 - AluSc SINE Alu -15 294 1 651 311 29 16 chrX 143969899 143969934 -18629996 - MIR SINE MIR -227 35 2 514 345 30 30 chrX 143970217 143970452 -18629478 - L2 LINE L2 -343 2971 2737 781 138 9 9 chrX 143970466 143970582 -18629348 + AluJo SINE Alu 21 136 -176 456 299 45 0 chrX 143970605 143970739 -18629191 - L2 LINE L2 -609 2705 2566 182 342 13 0 chrX 143970742 143970818 -18629112 + MIR SINE MIR 67 143 -65 1425 171 35 123 chrX 143971463 143971885 -18628045 - L1ME3A LINE L1 -68 6102 5718 496 314 40 55 chrX 143971965 143972341 -18627589 + L2 LINE L2 2702 3092 -180 529 266 8 91 chrX 143972398 143972639 -18627291 - MIR SINE MIR -40 222 2 254 263 92 0 chrX 143972900 143972976 -18626954 + MIR SINE MIR 174 256 -6 342 202 48 58 chrX 143972987 143973091 -18626839 - MIR SINE MIR 0 262 160 944 216 61 64 chrX 143973092 143973434 -18626496 - LTR33A LTR ERVL -1 522 182 422 227 0 0 chrX 143973443 143973518 -18626412 + MER81 DNA DNA 39 113 -1 518 278 27 32 chrX 143973524 143973711 -18626219 - LTR33A LTR ERVL -336 187 2 346 215 0 0 chrX 143974155 143974220 -18625710 - MER5C DNA MER1_type -248 76 12 256 172 149 46 chrX 143974278 143974365 -18625565 + MIR SINE MIR 45 140 -68 201 39 0 0 chrX 143974620 143974646 -18625284 + (TG)n Simple_repeat Simple_repeat 2 27 0 472 301 62 34 chrX 143976483 143976692 -18623238 + MIR SINE MIR 14 228 -34 413 219 141 31 chrX 143976914 143977042 -18622888 + MIR SINE MIR 21 162 -100 2060 192 35 17 chrX 143977042 143977192 -18622738 + MLT1C LTR MaLR 1 147 -320 2972 177 4 53 chrX 143977192 143977734 -18622196 + MLT2B2 LTR ERVL 1 515 0 2060 192 35 17 chrX 143977734 143977989 -18621941 + MLT1C LTR MaLR 147 413 -54 6940 124 11 7 chrX 143978009 143979106 -18620824 - L1MA3 LINE L1 0 6305 5205 459 184 0 0 chrX 143979106 143979182 -18620748 + MLT1C LTR MaLR 392 467 0 608 270 84 46 chrX 143979310 143979547 -18620383 + MIR SINE MIR 17 262 0 266 0 29 0 chrX 143979565 143979599 -18620331 + (TTA)n Simple_repeat Simple_repeat 3 37 0 287 343 25 80 chrX 143979618 143979892 -18620038 + L2 LINE L2 3012 3270 -2 845 319 206 29 chrX 143980366 143981499 -18618431 + L2 LINE L2 371 1703 -1611 193 250 0 23 chrX 143981603 143981647 -18618283 + MIR SINE MIR 57 99 -163 266 200 0 33 chrX 143981899 143981959 -18617971 - L2 LINE L2 -5 3308 3251 685 250 82 35 chrX 143982147 143982403 -18617527 + LTR16C LTR ERVL 224 491 0 290 311 0 39 chrX 143982461 143982564 -18617366 + MIR SINE MIR 160 258 -4 2508 221 128 14 chrX 143982568 143982915 -18617015 - LTR50 LTR ERVL 0 795 489 2342 144 27 11 chrX 143982915 143983284 -18616646 - THE1C LTR MaLR 0 375 1 2508 221 128 14 chrX 143983284 143983648 -18616282 - LTR50 LTR ERVL -306 489 3 199 355 0 0 chrX 143983655 143983717 -18616213 - MIR SINE MIR -79 183 122 1459 174 50 59 chrX 143983741 143984095 -18615835 + MLT2B1 LTR ERVL 1 376 -38 725 65 9 0 chrX 143984095 143984203 -18615727 + (TCTA)n Simple_repeat Simple_repeat 2 110 0 1459 174 50 59 chrX 143984203 143984242 -18615688 + MLT2B1 LTR ERVL 376 414 0 255 125 125 0 chrX 143984242 143984290 -18615640 - L1MC1 LINE L1 -33 6300 6247 462 228 0 0 chrX 143984310 143984402 -18615528 - MIR SINE MIR -157 105 14 1525 227 87 16 chrX 143986451 143986821 -18613109 + MSTD LTR MaLR 1 396 0 8375 11 8 0 chrX 143987185 143988726 -18611204 + L1PA3 LINE L1 4606 6155 0 534 194 75 8 chrX 143989555 143989689 -18610241 - MIR SINE MIR -111 151 9 533 280 188 53 chrX 143990939 143991002 -18608928 - L2 LINE L2 -1 3312 3259 219 114 0 0 chrX 143991002 143991037 -18608893 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 533 280 188 53 chrX 143991037 143991316 -18608614 - L2 LINE L2 -54 3259 2912 536 0 0 15 chrX 143991316 143991381 -18608549 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 533 280 188 53 chrX 143991381 143991415 -18608515 - L2 LINE L2 -401 2912 2884 308 247 22 34 chrX 143991816 143991905 -18608025 - MARNA DNA Mariner -243 343 256 244 241 0 0 chrX 143991929 143991987 -18607943 + (TA)n Simple_repeat Simple_repeat 2 59 0 229 65 0 0 chrX 143991991 143992037 -18607893 + LTR66 LTR ERVL 394 439 -171 2667 200 15 77 chrX 143992051 143992123 -18607807 - L1ME2 LINE L1 -56 6108 6033 1804 153 0 36 chrX 143992123 143992431 -18607499 + AluJb SINE Alu 11 307 -5 2667 200 15 77 chrX 143992431 143993024 -18606906 - L1ME2 LINE L1 -131 6033 5484 3614 101 69 0 chrX 143993041 143993536 -18606394 + MER1A DNA MER1_type 1 529 0 1712 246 79 40 chrX 143993550 143994082 -18605848 + MLT1E LTR MaLR 41 593 0 266 216 27 162 chrX 143994083 143994231 -18605699 - L1ME2 LINE L1 -1841 4305 4178 1057 192 87 24 chrX 143994234 143994568 -18605362 - L1ME2 LINE L1 -2948 3198 2844 250 244 49 0 chrX 143994637 143994719 -18605211 + L1MC4 LINE L1 6615 6700 -1342 * 255 284 23 0 chrX 143994694 143994782 -18605148 - L1MC4 LINE L1 -1339 6703 6614 252 276 23 0 chrX 143994775 143994862 -18605068 + L1MC4 LINE L1 6615 6703 -1339 * 324 245 0 53 chrX 143994894 143994988 -18604942 + L1MC4 LINE L1 6615 6703 -1339 532 177 21 54 chrX 143994989 143995175 -18604755 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 178 0 119 chrX 143995189 143995290 -18604640 + L1MC4 LINE L1 6615 6703 -1339 291 234 0 0 chrX 143995290 143995367 -18604563 + (TA)n Simple_repeat Simple_repeat 1 77 0 261 247 0 43 chrX 143995369 143995462 -18604468 + L1MC4 LINE L1 6615 6703 -1339 279 320 0 0 chrX 143995466 143995588 -18604342 + (TA)n Simple_repeat Simple_repeat 2 123 0 263 247 47 0 chrX 143995595 143995680 -18604250 + L1MC4 LINE L1 6614 6702 -1340 226 318 0 0 chrX 143995654 143995739 -18604191 - L1MC4 LINE L1 -1344 6698 6614 * 256 250 48 0 chrX 143995698 143995782 -18604148 + L1MC4 LINE L1 6615 6702 -1340 226 318 0 0 chrX 143995756 143995841 -18604089 - L1MC4 LINE L1 -1344 6698 6614 * 256 250 48 0 chrX 143995800 143995884 -18604046 + L1MC4 LINE L1 6615 6702 -1340 226 318 0 0 chrX 143995858 143995943 -18603987 - L1MC4 LINE L1 -1344 6698 6614 * 275 272 0 17 chrX 143995936 143996056 -18603874 + L1MC4 LINE L1 6615 6699 -1343 231 360 0 0 chrX 143996045 143996134 -18603796 - L1MC4 LINE L1 -1339 6703 6615 * 286 259 47 0 chrX 143996060 143996145 -18603785 + L1MC4 LINE L1 6615 6703 -1339 423 330 0 0 chrX 143996147 143996370 -18603560 + (TA)n Simple_repeat Simple_repeat 1 223 -108 243 130 93 0 chrX 143996370 143996424 -18603506 + L1MC4 LINE L1 2006 2064 -4362 243 130 93 0 chrX 143996408 143996462 -18603468 + L1MC4 LINE L1 2006 2064 -4362 * 423 330 0 0 chrX 143996424 143996478 -18603452 + (TA)n Simple_repeat Simple_repeat 222 331 0 234 148 93 0 chrX 143996446 143996500 -18603430 + L1MC4 LINE L1 2006 2064 -4362 * 323 233 38 15 chrX 143996484 143996615 -18603315 + L1MC4 LINE L1 2006 7008 -1314 282 208 0 0 chrX 143996613 143996666 -18603264 - L1M4 LINE L1 -3309 2837 2785 * 973 199 0 0 chrX 143996799 143996995 -18602935 + L1PB1 LINE L1 1 196 -6667 2958 98 96 14 chrX 143996995 143997485 -18602445 + L1PB1 LINE L1 634 1163 -5700 9565 170 28 81 chrX 143997489 143998660 -18601270 + L1PB1 LINE L1 1317 2549 -4337 244 57 0 0 chrX 143998660 143998695 -18601235 + Alu SINE Alu 106 140 -168 9565 170 28 81 chrX 143998695 143999867 -18600063 + L1PB1 LINE L1 2549 3782 -3104 2273 107 3 7 chrX 143999867 144000177 -18599753 + AluSg SINE Alu 1 309 -1 9565 170 28 81 chrX 144000177 144000516 -18599414 + L1PB1 LINE L1 3782 4138 -2748 2014 108 26 92 chrX 144000516 144000584 -18599346 - THE1B LTR MaLR 0 364 293 3186 41 0 3 chrX 144000584 144000973 -18598957 - L1PA6 LINE L1 0 6154 5767 2014 108 26 92 chrX 144000973 144001294 -18598636 - THE1B LTR MaLR -71 293 1 9565 170 28 81 chrX 144001294 144003751 -18596179 + L1PB1 LINE L1 4138 6490 -396 270 56 0 0 chrX 144003751 144003787 -18596143 + (CA)n Simple_repeat Simple_repeat 2 37 0 9565 170 28 81 chrX 144003787 144004164 -18595766 + L1PB1 LINE L1 6490 6886 0 21 43 0 22 chrX 144004460 144004491 -18595439 + AT_rich Low_complexity Low_complexity 1 32 -13 4719 95 17 1 chrX 144004491 144005187 -18594743 - L1MA1 LINE L1 0 6302 5596 21 43 0 22 chrX 144005187 144005201 -18594729 + AT_rich Low_complexity Low_complexity 32 45 0 15517 161 16 13 chrX 144005220 144009292 -18590638 - L1PA14 LINE L1 -17 6144 2059 14688 166 10 19 chrX 144010824 144013690 -18586240 - L1M1 LINE L1 -694 5610 2779 1569 221 0 7 chrX 144013690 144013984 -18585946 - AluJb SINE Alu -20 292 1 14688 166 10 19 chrX 144013984 144014442 -18585488 - L1M1 LINE L1 -3525 2779 2318 210 71 0 0 chrX 144014470 144014498 -18585432 + (CTG)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chrX 144014639 144014662 -18585268 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 413 284 49 39 chrX 144014732 144014936 -18584994 - MARNA DNA Mariner -363 223 18 392 299 86 40 chrX 144015179 144015353 -18584577 - MIR3 SINE MIR -10 198 17 980 149 26 140 chrX 144015464 144015772 -18584158 + ORSL DNA AcHobo 3 275 0 912 164 0 53 chrX 144016835 144017024 -18582906 - MER97c DNA MER1_type? -911 179 1 23 0 0 0 chrX 144018513 144018536 -18581394 + AT_rich Low_complexity Low_complexity 1 23 0 568 299 0 7 chrX 144018968 144019122 -18580808 + MIR SINE MIR 4 156 -106 784 258 60 14 chrX 144019158 144019441 -18580489 - MER46C DNA MER2_type -42 296 1 253 215 92 0 chrX 144019441 144019506 -18580424 + MIR SINE MIR 178 248 -14 234 346 0 0 chrX 144020869 144020950 -18578980 + MARNA DNA Mariner 108 188 -398 * 535 289 0 6 chrX 144020880 144021039 -18578891 - MARNA DNA Mariner -120 466 309 2396 94 6 0 chrX 144021097 144021437 -18578493 + L1PB2 LINE L1 5807 6148 -3 414 288 72 37 chrX 144021524 144021765 -18578165 - MIR SINE MIR -3 259 3 197 171 0 0 chrX 144022087 144022122 -18577808 - L2 LINE L2 -99 3214 3180 2182 267 107 25 chrX 144022262 144023157 -18576773 - L2 LINE L2 -264 3008 2032 345 274 21 11 chrX 144023599 144023694 -18576236 + L2 LINE L2 3134 3229 -43 2768 137 31 9 chrX 144024341 144024795 -18575135 + MER88 LTR ERVL 1 464 0 1674 182 19 21 chrX 144024795 144025153 -18574777 + MLT1A1 LTR MaLR 10 365 0 747 275 49 24 chrX 144025403 144025650 -18574280 + MIR SINE MIR 10 262 0 759 232 63 0 chrX 144025663 144025853 -18574077 + MIR SINE MIR 2 203 -59 495 165 17 26 chrX 144025913 144026028 -18573902 - MER103 DNA DNA 0 166 53 209 253 0 149 chrX 144026107 144026194 -18573736 + MIR SINE MIR 188 261 -1 9516 87 3 1 chrX 144026282 144028362 -18571568 - L1PA7 LINE L1 -1 6153 4075 2209 125 0 3 chrX 144028363 144028668 -18571262 - AluSx SINE Alu -8 304 1 445 282 31 77 chrX 144029064 144029259 -18570671 + MIR3 SINE MIR 6 191 -17 365 258 65 0 chrX 144029279 144029392 -18570538 - MIR SINE MIR -65 143 35 5896 103 17 1 chrX 144029769 144030439 -18569491 - L1PA14 LINE L1 -4 6157 5499 2213 95 20 3 chrX 144030439 144030733 -18569197 - AluSq SINE Alu -14 299 1 5896 103 17 1 chrX 144030733 144031540 -18568390 - L1PA14 LINE L1 -662 5499 4678 2478 139 54 10 chrX 144031703 144032113 -18567817 + MSTA LTR MaLR 1 428 0 761 204 5 102 chrX 144032180 144032376 -18567554 - MER5A DNA MER1_type -3 186 10 316 243 173 17 chrX 144032799 144032919 -18567011 + MIR SINE MIR 34 167 -64 700 109 0 0 chrX 144033049 144033150 -18566780 - MSTD LTR MaLR -2 394 294 * 917 205 12 0 chrX 144033117 144033288 -18566642 - MLT2B3 LTR ERVL -65 489 317 * 981 215 115 23 chrX 144033281 144033542 -18566388 - MSTD LTR MaLR -111 285 1 245 169 119 0 chrX 144033542 144033601 -18566329 - MER103 DNA DNA -66 100 35 1435 183 8 12 chrX 144033820 144034077 -18565853 - AluJo SINE Alu -10 302 47 415 345 1 8 chrX 144034562 144034709 -18565221 - MIR SINE MIR -67 141 20 1198 187 48 13 chrX 144035080 144035390 -18564540 + MER33 DNA MER1_type 1 321 -3 781 196 75 6 chrX 144035394 144035567 -18564363 + MER58A DNA MER1_type 40 224 0 738 296 52 9 chrX 144035584 144035817 -18564113 - MIR SINE MIR -18 244 2 1778 140 42 79 chrX 144036271 144036649 -18563281 - THE1B LTR MaLR 0 364 1 699 112 9 0 chrX 144037135 144037242 -18562688 - MLT1A1 LTR MaLR -257 108 1 2075 282 88 34 chrX 144037308 144038442 -18561488 + L2 LINE L2 2113 3313 0 231 305 0 0 chrX 144039351 144039410 -18560520 + L2 LINE L2 3210 3268 -4 1313 299 62 22 chrX 144039428 144040132 -18559798 - L2 LINE L2 0 3313 2582 288 103 0 0 chrX 144040357 144040433 -18559497 - Alu SINE Alu 0 319 244 2162 115 24 0 chrX 144040433 144040721 -18559209 - AluSg SINE Alu -15 295 1 2254 244 66 17 chrX 144040730 144041595 -18558335 - L1M4 LINE L1 -745 5401 4495 1054 160 42 0 chrX 144041596 144041809 -18558121 - L1MA9 LINE L1 0 6312 6091 920 217 37 0 chrX 144041831 144042020 -18557910 - AluJo SINE Alu -30 282 87 2008 118 29 131 chrX 144042020 144042506 -18557424 - L1MA9 LINE L1 -209 6103 5671 2169 72 22 4 chrX 144042506 144042816 -18557114 - AluSg SINE Alu 0 315 1 2008 118 29 131 chrX 144042816 144042847 -18557083 - L1MA9 LINE L1 -641 5671 5638 259 269 13 13 chrX 144043372 144043450 -18556480 - L1M3c LINE L1 -6062 79 2 857 185 7 0 chrX 144043479 144043630 -18556300 - MLT1A1 LTR MaLR -78 287 136 1095 279 74 16 chrX 144043631 144043952 -18555978 - L1M4 LINE L1 -1639 4507 4139 207 0 0 0 chrX 144043952 144043975 -18555955 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1095 279 74 16 chrX 144043975 144044205 -18555725 - L1M4 LINE L1 -2007 4139 3924 1024 244 48 4 chrX 144044222 144044492 -18555438 - MLT1E1 LTR MaLR 0 654 373 194 298 0 0 chrX 144044533 144044580 -18555350 + L2 LINE L2 2594 2640 -674 219 88 0 0 chrX 144044643 144044677 -18555253 + (A)n Simple_repeat Simple_repeat 1 34 0 207 374 108 25 chrX 144044906 144045109 -18554821 + L2 LINE L2 2977 3196 -76 268 239 75 0 chrX 144045511 144045578 -18554352 + MER117 DNA MER1_type 15 86 -111 2126 153 7 12 chrX 144045584 144045988 -18553942 - L1MB7 LINE L1 -19 6165 5764 207 333 0 0 chrX 144046255 144046321 -18553609 - MIR3 SINE MIR -5 203 138 187 197 92 118 chrX 144047600 144047676 -18552254 - MIR3 SINE MIR -17 191 118 495 308 86 0 chrX 144048142 144048340 -18551590 - MIR SINE MIR -46 216 2 583 227 43 18 chrX 144048448 144048611 -18551319 - MIR SINE MIR -26 236 70 2529 61 0 10 chrX 144050107 144050418 -18549512 - AluY SINE Alu -3 308 1 997 208 92 23 chrX 144050432 144050735 -18549195 - L1MB8 LINE L1 -40 6138 5815 391 317 62 77 chrX 144050782 144051163 -18548767 + L2 LINE L2 2751 3129 -143 211 318 193 0 chrX 144051262 144051350 -18548580 + L2 LINE L2 3152 3256 -16 518 278 35 14 chrX 144052144 144052288 -18547642 - L2 LINE L2 -4 3268 3122 556 297 96 14 chrX 144053282 144053491 -18546439 + MIR SINE MIR 21 246 -16 477 34 0 0 chrX 144053711 144053770 -18546160 + (TG)n Simple_repeat Simple_repeat 2 60 0 2253 99 0 29 chrX 144053861 144054174 -18545756 + AluSx SINE Alu 1 304 -8 2097 131 3 0 chrX 144054174 144054465 -18545465 + AluSq SINE Alu 1 292 -21 1053 132 59 0 chrX 144054837 144054989 -18544941 + AluSq SINE Alu 128 288 -25 1750 293 96 28 chrX 144055002 144055922 -18544008 + L2 LINE L2 2215 3206 -107 2616 84 24 11 chrX 144056140 144056510 -18543420 - THE1C LTR MaLR 0 375 1 246 256 51 34 chrX 144056777 144056894 -18543036 - HAL1 LINE L1 -11 2496 2378 24 32 0 0 chrX 144056997 144057028 -18542902 + AT_rich Low_complexity Low_complexity 1 31 0 1061 258 154 29 chrX 144057546 144057961 -18541969 - L2 LINE L2 -9 3304 2838 229 269 0 0 chrX 144058364 144058416 -18541514 + GA-rich Low_complexity Low_complexity 4 55 0 349 333 35 7 chrX 144058677 144058821 -18541109 + L3 LINE CR1 306 453 -1124 571 308 197 17 chrX 144058837 144059188 -18540742 + L3 LINE CR1 575 988 -589 283 364 0 0 chrX 144059228 144059316 -18540614 + L2 LINE L2 3201 3288 -25 425 344 80 0 chrX 144059318 144059469 -18540461 + L3 LINE CR1 1015 1177 -400 958 291 193 2 chrX 144059472 144059891 -18540039 - L2 LINE L2 -4 3309 2811 743 274 13 93 chrX 144059968 144060344 -18539586 + L3 LINE CR1 1230 1575 -2 1074 282 45 49 chrX 144061547 144062039 -18537891 + L1MC4a LINE L1 5327 5818 -1990 2228 67 70 0 chrX 144062039 144062324 -18537606 + AluSp SINE Alu 1 305 -8 1074 282 45 49 chrX 144062324 144062427 -18537503 + L1MC4a LINE L1 5818 5920 -1888 201 258 0 0 chrX 144062436 144062502 -18537428 + (TA)n Simple_repeat Simple_repeat 2 67 0 236 315 11 0 chrX 144062508 144062597 -18537333 + L1ME4a LINE L1 5936 6025 -96 650 263 42 33 chrX 144062656 144062861 -18537069 - MIR SINE MIR -1 261 52 260 220 0 0 chrX 144063064 144063123 -18536807 + L2 LINE L2 764 822 -2492 755 146 70 35 chrX 144063130 144063301 -18536629 - Tigger6a DNA MER2_type 0 1083 907 1815 159 0 7 chrX 144063302 144063592 -18536338 + AluJo SINE Alu 1 288 -24 189 0 0 0 chrX 144063597 144063618 -18536312 + (TA)n Simple_repeat Simple_repeat 1 21 0 46 89 0 0 chrX 144063618 144063741 -18536189 + AT_rich Low_complexity Low_complexity 1 123 0 4261 158 33 34 chrX 144063792 144064693 -18535237 - Tigger6a DNA MER2_type -167 916 17 1154 239 105 65 chrX 144064702 144064740 -18535190 + L2 LINE L2 2660 2695 -618 1633 188 7 36 chrX 144064740 144065049 -18534881 - AluJo SINE Alu -12 300 1 1154 239 105 65 chrX 144065049 144065666 -18534264 + L2 LINE L2 2695 3313 0 312 305 49 59 chrX 144067451 144067546 -18532384 + MLT1K LTR MaLR 125 219 -369 2107 131 39 112 chrX 144067546 144068012 -18531918 - MSTB1 LTR MaLR 0 432 1 312 305 49 59 chrX 144068012 144068119 -18531811 + MLT1K LTR MaLR 219 325 -263 278 253 13 13 chrX 144068284 144068363 -18531567 + MLT1K LTR MaLR 509 587 -1 1977 106 53 3 chrX 144068405 144068689 -18531241 + AluSp SINE Alu 1 298 -15 312 281 25 44 chrX 144068696 144068856 -18531074 + L1MC4a LINE L1 5768 5924 -1884 307 295 23 54 chrX 144068942 144069071 -18530859 + L1MC4a LINE L1 6054 6178 -1630 244 258 183 0 chrX 144069091 144069211 -18530719 - Tigger8 DNA MER2_type -93 573 432 1612 219 76 11 chrX 144069644 144070119 -18529811 + Charlie4a DNA MER1_type 2 507 -1 1097 223 70 66 chrX 144070119 144070666 -18529264 - MLT1E LTR MaLR -3 590 1 531 318 50 20 chrX 144070749 144070947 -18528983 - MIR SINE MIR -12 250 47 222 171 0 0 chrX 144070997 144071038 -18528892 + (CATA)n Simple_repeat Simple_repeat 3 43 0 230 267 0 0 chrX 144071040 144071130 -18528800 - L1MC4 LINE L1 -1339 6703 6614 20415 108 5 8 chrX 144071161 144075032 -18524898 - L1PA6 LINE L1 -15 6139 2272 2909 193 35 83 chrX 144075032 144075075 -18524855 + L1MB8 LINE L1 4095 4138 -2008 207 0 0 0 chrX 144075075 144075098 -18524832 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2909 193 35 83 chrX 144075098 144075353 -18524577 + L1MB8 LINE L1 4138 4404 -1742 4431 153 24 6 chrX 144075353 144075669 -18524261 + L1MA7 LINE L1 5465 5774 -517 441 0 0 0 chrX 144075669 144075718 -18524212 + (CA)n Simple_repeat Simple_repeat 2 50 0 4431 153 24 6 chrX 144075718 144076205 -18523725 + L1MA7 LINE L1 5774 6282 -9 2226 116 0 0 chrX 144076209 144076503 -18523427 - AluSx SINE Alu -17 295 2 2909 193 35 83 chrX 144076503 144077167 -18522763 + L1MB8 LINE L1 4407 5017 -1129 907 209 0 0 chrX 144077172 144077325 -18522605 + FRAM SINE Alu 1 152 -24 1511 195 70 34 chrX 144077332 144078796 -18521134 + L1MB8 LINE L1 5009 6178 0 326 344 89 22 chrX 144078798 144079068 -18520862 + L1MC/D LINE L1 4180 4467 -1679 302 280 34 102 chrX 144079097 144079304 -18520626 + L1MC/D LINE L1 4501 4676 -1470 774 154 23 0 chrX 144079304 144079434 -18520496 + FLAM_C SINE Alu 1 133 0 302 280 34 102 chrX 144079434 144079580 -18520350 + L1MC/D LINE L1 4676 4830 -1316 1688 158 0 14 chrX 144079663 144079941 -18519989 - AluJb SINE Alu -15 297 24 350 313 9 27 chrX 144080091 144080203 -18519727 + L2 LINE L2 2908 3017 -296 256 228 360 22 chrX 144080176 144080312 -18519618 + L2 LINE L2 2042 2223 -1091 * 2021 228 24 9 chrX 144080320 144080786 -18519144 + L2 LINE L2 2372 2844 -470 489 252 41 73 chrX 144080832 144081050 -18518880 + L2 LINE L2 3103 3313 0 * 977 279 67 9 chrX 144081049 144081364 -18518566 + L2 LINE L2 2980 3312 -1 271 224 128 31 chrX 144081385 144081581 -18518349 + L1MC/D LINE L1 5260 5474 -2334 246 61 61 0 chrX 144081602 144081651 -18518279 + (TA)n Simple_repeat Simple_repeat 1 52 0 1013 245 15 27 chrX 144081680 144081941 -18517989 - MIR SINE MIR 0 262 5 920 172 21 6 chrX 144082017 144082213 -18517717 - L1P5 LINE L1 -582 5572 5377 2345 235 52 21 chrX 144082217 144082584 -18517346 - L1M4 LINE L1 -823 5323 4969 1974 134 3 26 chrX 144082584 144082890 -18517040 - AluSx SINE Alu -9 303 5 2345 235 52 21 chrX 144082890 144083305 -18516625 - L1M4 LINE L1 -1177 4969 4454 486 379 49 0 chrX 144083334 144083577 -18516353 + L2 LINE L2 2403 2657 -657 4175 209 51 30 chrX 144083614 144084658 -18515272 - L1MD2 LINE L1 -2 6357 5336 213 39 0 0 chrX 144084658 144084684 -18515246 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1722 118 0 0 chrX 144084684 144084912 -18515018 - AluSg1 SINE Alu -27 282 55 4175 209 51 30 chrX 144084912 144085216 -18514714 - L1MD2 LINE L1 -1022 5337 4996 1301 194 0 35 chrX 144085253 144085485 -18514445 + AluJo SINE Alu 1 224 -88 2220 257 58 23 chrX 144085514 144086381 -18513549 - L1MD2 LINE L1 -1136 5010 4114 431 220 34 0 chrX 144086399 144086517 -18513413 - L1MD2 LINE L1 -2236 3910 3789 4385 31 0 0 chrX 144086658 144087172 -18512758 + L1PA3 LINE L1 5639 6152 -3 205 307 141 40 chrX 144087194 144087784 -18512146 + L2 LINE L2 1596 2310 -1004 434 317 126 11 chrX 144087809 144087992 -18511938 - MIR SINE MIR -16 246 43 696 213 0 0 chrX 144088035 144088190 -18511740 + L1MA10 LINE L1 6179 6333 -1 405 343 62 35 chrX 144088246 144088584 -18511346 + L2 LINE L2 2328 2674 -640 237 286 83 0 chrX 144088599 144088683 -18511247 + MIR3 SINE MIR 95 185 -23 2430 92 0 0 chrX 144088768 144089071 -18510859 + AluSx SINE Alu 2 304 -8 216 167 136 45 chrX 144090454 144090520 -18509410 + MIR SINE MIR 73 144 -118 556 339 83 22 chrX 144090525 144090802 -18509128 + L2 LINE L2 2403 2696 -618 3040 178 21 11 chrX 144090807 144091526 -18508404 - L1MB5 LINE L1 -4 7589 6709 * 15569 157 79 12 chrX 144091509 144091536 -18508394 - L1MB5 LINE L1 -4325 3240 3216 763 51 0 0 chrX 144091536 144091634 -18508296 - L1MA1 LINE L1 0 6302 6205 15569 157 79 12 chrX 144091634 144091699 -18508231 - L1MB5 LINE L1 -4349 3216 3157 2262 110 48 20 chrX 144091699 144092053 -18507877 + THE1B LTR MaLR 1 364 0 15569 157 79 12 chrX 144092053 144094982 -18504948 - L1MB5 LINE L1 -4408 3157 14 2704 232 28 13 chrX 144094989 144095765 -18504165 - L1M4 LINE L1 -845 5537 4750 * 3961 221 46 64 chrX 144095755 144099452 -18500478 - L1PA16 LINE L1 -116 6050 2497 198 0 0 0 chrX 144096459 144096481 -18503449 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2543 212 63 18 chrX 144096481 144099282 -18500648 - L1MA4 LINE L1 -929 5371 2479 240 35 0 0 chrX 144099282 144099311 -18500619 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 2543 212 63 18 chrX 144099311 144099476 -18500454 - L1MA4 LINE L1 -3821 2479 2323 3222 248 36 15 chrX 144099476 144100612 -18499318 - L1M4 LINE L1 -4276 2108 854 1542 198 48 40 chrX 144100619 144101018 -18498912 - L1MD2 LINE L1 -381 5978 5577 9019 196 34 16 chrX 144101052 144103978 -18495952 - L1 LINE L1 -2976 3872 892 871 222 0 0 chrX 144103978 144104158 -18495772 - L1MD2 LINE L1 -658 5584 5405 733 175 36 15 chrX 144104159 144104296 -18495634 - MLT1A2 LTR MaLR 0 374 235 * 898 183 46 6 chrX 144104284 144104459 -18495471 + MLT1A2 LTR MaLR 193 374 0 266 137 32 56 chrX 144104459 144104528 -18495402 + L1MB8 LINE L1 6082 6142 -42 2596 45 0 3 chrX 144104528 144104838 -18495092 - AluY SINE Alu -2 309 1 266 137 32 56 chrX 144104838 144104875 -18495055 + L1MB8 LINE L1 6142 6178 -6 848 265 17 8 chrX 144105084 144105318 -18494612 - MIR SINE MIR -4 258 23 399 185 19 6 chrX 144105458 144105542 -18494388 - AluJ/FLAM SINE Alu -240 62 1 1861 205 63 5 chrX 144105545 144105975 -18493955 - L1MC3 LINE L1 -374 5810 5408 535 258 15 155 chrX 144106036 144106307 -18493623 + MIR SINE MIR 19 251 -11 859 143 0 8 chrX 144106749 144106875 -18493055 + FLAM_C SINE Alu 1 125 -18 927 211 57 14 chrX 144107169 144107378 -18492552 + MER58A DNA MER1_type 4 221 -3 1922 132 54 43 chrX 144111402 144111773 -18488157 - THE1C LTR MaLR 0 375 1 873 204 23 12 chrX 144111798 144111970 -18487960 - MER5A DNA MER1_type 0 189 16 819 240 0 6 chrX 144111996 144112175 -18487755 + MER5B DNA MER1_type 1 178 0 678 253 60 6 chrX 144112653 144112819 -18487111 - MER5B DNA MER1_type 0 178 4 391 250 8 4 chrX 144113041 144113177 -18486753 + MER5A DNA MER1_type 4 186 -3 1319 151 9 0 chrX 144113527 144113752 -18486178 + L1MC1 LINE L1 6107 6333 0 1897 239 65 16 chrX 144113759 144114547 -18485383 + L1ME4a LINE L1 2948 3773 -2373 999 244 43 70 chrX 144114547 144115105 -18484825 + MER39 LTR ERV1 1 640 0 424 148 23 31 chrX 144115173 144115301 -18484629 + L1ME4a LINE L1 3830 3956 -2190 17061 185 17 36 chrX 144115355 144118014 -18481916 + L1PA11 LINE L1 687 3252 -3209 3578 73 2 0 chrX 144118014 144118466 -18481464 - MLT2A2 LTR ERVL 0 453 1 17061 185 17 36 chrX 144118466 144119772 -18480158 + L1PA11 LINE L1 3252 4581 -1880 7077 56 1 0 chrX 144119790 144121267 -18478663 - L1PA5 LINE L1 -2 6152 4672 6566 147 15 2 chrX 144121264 144123171 -18476759 + L1PA11 LINE L1 4561 6489 0 * 1014 222 96 4 chrX 144123173 144123443 -18476487 + L1ME4a LINE L1 3953 4247 -1899 * 20949 158 20 15 chrX 144123440 144130554 -18469376 + L1MA2 LINE L1 12 7174 -549 2397 105 0 6 chrX 144130554 144130867 -18469063 + AluSx SINE Alu 1 311 -1 20949 158 20 15 chrX 144130867 144131420 -18468510 + L1MA2 LINE L1 7174 7723 0 2914 243 32 27 chrX 144131427 144132362 -18467568 + L1ME4a LINE L1 4232 5171 -975 418 230 137 14 chrX 144133193 144133332 -18466598 - MIR SINE MIR -11 251 96 424 205 24 0 chrX 144134169 144134252 -18465678 - L2 LINE L2 -2 3270 3186 29972 117 11 61 chrX 144134537 144139501 -18460429 + L1PA8 LINE L1 2 4553 -1619 234 0 0 0 chrX 144139501 144139527 -18460403 + (CAA)n Simple_repeat Simple_repeat 2 27 0 29972 117 11 61 chrX 144139527 144141067 -18458863 + L1PA8 LINE L1 4553 6169 -3 25 0 0 0 chrX 144141971 144141996 -18457934 + AT_rich Low_complexity Low_complexity 1 25 0 571 263 80 42 chrX 144141997 144142210 -18457720 - MIR SINE MIR -1 261 41 4767 169 59 62 chrX 144142615 144143684 -18456246 - Tigger6a DNA MER2_type -17 1066 1 961 279 12 12 chrX 144143733 144143977 -18455953 - MIR SINE MIR -4 258 15 1815 155 3 17 chrX 144144136 144144426 -18455504 + AluJb SINE Alu 1 286 -26 246 81 0 0 chrX 144144426 144144463 -18455467 + (CA)n Simple_repeat Simple_repeat 2 38 0 280 343 42 46 chrX 144144485 144144768 -18455162 + L1P LINE L1 4752 5033 -1113 338 273 11 0 chrX 144145095 144145183 -18454747 + L1ME4a LINE L1 5496 5584 -537 648 217 191 23 chrX 144145297 144145596 -18454334 + L1ME4a LINE L1 5762 6110 -11 2936 95 22 2 chrX 144146263 144146664 -18453266 + MLT2A2 LTR ERVL 1 409 -44 34 0 0 0 chrX 144146667 144146701 -18453229 + AT_rich Low_complexity Low_complexity 1 34 0 319 70 112 0 chrX 144146701 144146760 -18453170 + MLT2A2 LTR ERVL 402 453 0 38429 64 9 14 chrX 144146760 144152414 -18447516 + HERVL-A2-A2 LTR ERVL 1 5654 0 3206 84 34 9 chrX 144152414 144152856 -18447074 + MLT2A2 LTR ERVL 1 453 0 194 326 122 29 chrX 144152905 144153077 -18446853 + L2 LINE L2 2229 2416 -898 207 0 0 0 chrX 144153826 144153849 -18446081 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 346 314 24 47 chrX 144154115 144154411 -18445519 - L1MC4a LINE L1 -1907 5901 5613 312 286 14 20 chrX 144154456 144154686 -18445244 - L1PA8A LINE L1 -649 5482 5256 440 261 122 40 chrX 144155218 144155452 -18444478 + MIR SINE MIR 18 262 0 186 286 32 16 chrX 144155815 144155878 -18444052 + L2 LINE L2 3194 3257 -15 709 194 33 0 chrX 144156133 144156313 -18443617 - MER53 DNA DNA -2 187 2 306 0 0 0 chrX 144156702 144156736 -18443194 + (TG)n Simple_repeat Simple_repeat 1 34 0 1584 196 0 26 chrX 144159472 144159784 -18440146 - AluJo SINE Alu -8 304 1 249 203 8 148 chrX 144159817 144159945 -18439985 + MER102a DNA MER1_type 221 330 0 878 211 67 19 chrX 144159997 144160206 -18439724 + MER20 DNA MER1_type 1 219 0 513 286 136 19 chrX 144160534 144160740 -18439190 - MIR SINE MIR -18 244 15 518 308 7 0 chrX 144160751 144160897 -18439033 - MIR SINE MIR -9 253 107 297 337 0 0 chrX 144161007 144161093 -18438837 + MIR3 SINE MIR 15 100 -108 266 258 0 0 chrX 144161652 144161714 -18438216 - MER119 DNA MER1_type -349 234 173 6018 101 8 3 chrX 144161727 144162999 -18436931 + L1PB1 LINE L1 4873 6149 -2 453 279 149 0 chrX 144163036 144163190 -18436740 - MER119 DNA MER1_type -400 183 7 441 285 201 3 chrX 144163315 144163599 -18436331 - L1MC4a LINE L1 -1887 5921 5582 13845 157 33 9 chrX 144163694 144164830 -18435100 + L1MA1 LINE L1 1941 3049 -4672 2845 87 0 8 chrX 144164830 144165208 -18434722 - THE1C LTR MaLR 0 375 1 13845 157 33 9 chrX 144165208 144169195 -18430735 + L1MA1 LINE L1 3049 7211 -510 22224 40 1 7 chrX 144169195 144172730 -18427200 + L1PA5 LINE L1 2627 6154 0 13845 157 33 9 chrX 144172730 144173147 -18426783 + L1MA1 LINE L1 7211 7617 -104 5973 129 25 23 chrX 144173147 144173196 -18426734 + L1MA3 LINE L1 4735 4782 -1523 565 98 22 0 chrX 144173196 144173288 -18426642 + L1PB2 LINE L1 6055 6148 -3 5973 129 25 23 chrX 144173288 144173475 -18426455 + L1MA3 LINE L1 4782 4967 -1338 2143 113 55 25 chrX 144173475 144173839 -18426091 - THE1C LTR MaLR 0 375 1 5973 129 25 23 chrX 144173839 144174297 -18425633 + L1MA3 LINE L1 4967 5423 -882 2845 10 0 0 chrX 144174297 144174608 -18425322 + AluYa5 SINE Alu 1 311 0 5973 129 25 23 chrX 144174608 144175481 -18424449 + L1MA3 LINE L1 5423 6305 0 22 0 0 0 chrX 144175481 144175503 -18424427 + AT_rich Low_complexity Low_complexity 1 22 0 3299 176 26 49 chrX 144175556 144175673 -18424257 + L1MC2 LINE L1 5594 5712 -632 1535 184 41 50 chrX 144175673 144176037 -18423893 + MLT1A1 LTR MaLR 3 363 -2 3299 176 26 49 chrX 144176037 144176674 -18423256 + L1MC2 LINE L1 5712 6331 -13 4120 203 26 5 chrX 144176678 144177646 -18422284 + L1MB7 LINE L1 5196 6184 0 434 278 42 14 chrX 144177649 144177793 -18422137 - MLT1E LTR MaLR -433 160 13 1672 130 0 12 chrX 144177827 144178074 -18421856 + AluJb SINE Alu 38 281 -31 393 195 11 0 chrX 144178088 144178175 -18421755 + Charlie4 DNA MER1_type 1874 1961 0 210 313 211 23 chrX 144178465 144178593 -18421337 - MER5B DNA MER1_type -17 161 10 833 239 72 18 chrX 144178606 144178828 -18421102 + MIR SINE MIR 28 261 -1 674 269 119 9 chrX 144178922 144179149 -18420781 + MIR SINE MIR 2 253 -9 1419 108 58 8 chrX 144179860 144180119 -18419811 + L1MA8 LINE L1 6015 6286 -5 1893 120 54 34 chrX 144180219 144180570 -18419360 + LTR32 LTR ERVL 11 368 -103 810 153 19 32 chrX 144180570 144180727 -18419203 + LTR32 LTR ERVL 317 471 0 263 178 0 0 chrX 144181034 144181079 -18418851 - L2 LINE L2 -44 3269 3225 254 217 53 5 chrX 144181087 144181150 -18418780 + MIR SINE MIR 88 151 -57 209 244 0 0 chrX 144181836 144181877 -18418053 - L2 LINE L2 -36 3236 3196 501 315 95 25 chrX 144181911 144182201 -18417729 + L1MCa LINE L1 1755 2165 -4422 3572 108 76 48 chrX 144182264 144182906 -18417024 - L1PA16 LINE L1 -10 6156 5497 3439 242 1 1 chrX 144182906 144183837 -18416093 + L1MCa LINE L1 2805 3735 -2691 507 184 80 0 chrX 144183829 144183954 -18415976 + L1P LINE L1 2236 2370 -3776 * 12078 189 34 12 chrX 144183952 144186778 -18413152 - L1PA13 LINE L1 -3894 2903 1 4200 197 18 7 chrX 144186906 144187921 -18412009 - L1 LINE L1 -1011 5135 4110 679 281 15 25 chrX 144187914 144188313 -18411617 + L1MEc LINE L1 2022 2416 -3980 * 1887 267 117 10 chrX 144188332 144189355 -18410575 + L1MEc LINE L1 2530 3662 -2553 1050 211 35 67 chrX 144189354 144189552 -18410378 + L1MEc LINE L1 4524 4706 -1509 * 4901 56 0 2 chrX 144189552 144190164 -18409766 + L1PA6 LINE L1 5543 6153 -1 1050 211 35 67 chrX 144190164 144190340 -18409590 + L1MEc LINE L1 4706 4886 -1329 955 190 125 4 chrX 144190342 144190574 -18409356 - MER58B DNA MER1_type -1 340 81 1848 257 105 25 chrX 144192401 144192785 -18407145 + MER97b DNA MER1_type? 1 353 -700 2926 148 4 16 chrX 144192785 144193277 -18406653 - MER66B LTR ERV1 0 486 1 1848 257 105 25 chrX 144193277 144193829 -18406101 + MER97b DNA MER1_type? 353 1012 -41 275 126 9 207 chrX 144193836 144193947 -18405983 + L1MB8 LINE L1 6081 6169 -9 309 51 0 0 chrX 144193950 144193989 -18405941 + (TG)n Simple_repeat Simple_repeat 2 40 0 2491 221 65 35 chrX 144194106 144194885 -18405045 - L1ME1 LINE L1 -7 6553 5751 203 189 0 0 chrX 144194886 144194923 -18405007 + (TA)n Simple_repeat Simple_repeat 2 38 0 318 191 11 64 chrX 144194923 144195017 -18404913 + L1MC4 LINE L1 6614 6702 -1340 484 269 48 13 chrX 144195025 144195252 -18404678 - L1ME1 LINE L1 -790 5750 5516 1301 242 66 42 chrX 144195265 144195441 -18404489 - L1ME1 LINE L1 -4891 1649 1479 280 0 24 24 chrX 144195441 144195482 -18404448 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2227 75 0 4 chrX 144195485 144195764 -18404166 - AluSg SINE Alu -32 278 1 1301 242 66 42 chrX 144195764 144196158 -18403772 - L1ME1 LINE L1 -5062 1478 1061 542 279 103 7 chrX 144196156 144196582 -18403348 - L1MEd LINE L1 -3545 2837 2371 * 2749 100 10 81 chrX 144197022 144197266 -18402664 - L1PA15 LINE L1 -1 6164 5969 2234 115 120 28 chrX 144197266 144197658 -18402272 - MSTA LTR MaLR 0 428 1 2749 100 10 81 chrX 144197658 144197894 -18402036 - L1PA15 LINE L1 -196 5969 5718 245 275 113 0 chrX 144198075 144198217 -18401713 - L1MEd LINE L1 -4730 1652 1495 572 250 81 106 chrX 144198255 144198803 -18401127 - L1MEd LINE L1 -4914 1458 920 2044 266 39 15 chrX 144199091 144199689 -18400241 + L2 LINE L2 2262 2873 -441 335 136 0 0 chrX 144200628 144200694 -18399236 + L1PB1 LINE L1 6086 6151 0 266 323 31 56 chrX 144201684 144201845 -18398085 - L2 LINE L2 -86 3186 3030 5056 158 38 67 chrX 144201970 144202426 -18397504 + L1MC3 LINE L1 6588 7055 -730 465 34 0 0 chrX 144202426 144202485 -18397445 + L1PA3 LINE L1 6093 6151 -4 306 0 0 0 chrX 144202488 144202522 -18397408 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5056 158 38 67 chrX 144202522 144202875 -18397055 + L1MC3 LINE L1 7057 7359 -426 2003 158 13 90 chrX 144202875 144203343 -18396587 - MSTB1 LTR MaLR 0 432 1 5056 158 38 67 chrX 144203343 144203728 -18396202 + L1MC3 LINE L1 7359 7753 -32 4191 240 54 23 chrX 144203804 144205385 -18394545 - L1M4 LINE L1 -1287 4859 3229 549 285 63 34 chrX 144205622 144205829 -18394101 + MIR SINE MIR 47 259 -3 448 301 30 0 chrX 144206641 144206774 -18393156 + MIR SINE MIR 61 197 -65 449 293 29 8 chrX 144207018 144207206 -18392724 + L1MC4a LINE L1 5499 5662 -459 261 239 30 0 chrX 144207272 144207339 -18392591 + L1MC4a LINE L1 5845 5913 -1895 180 182 0 0 chrX 144207676 144207720 -18392210 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1890 141 25 42 chrX 144208228 144208589 -18391341 + THE1A LTR MaLR 1 355 0 328 340 21 35 chrX 144208780 144208921 -18391009 - L2 LINE L2 0 3272 3134 2552 65 0 3 chrX 144208987 144209297 -18390633 + AluSc SINE Alu 1 309 0 261 0 0 0 chrX 144209822 144209851 -18390079 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 359 62 23 chrX 144210093 144210221 -18389709 - L2 LINE L2 -34 3238 3106 981 278 4 8 chrX 144210577 144210829 -18389101 - MIR SINE MIR 0 262 12 679 249 57 12 chrX 144210832 144211077 -18388853 + MER112 DNA MER1_type 1 256 0 516 179 53 0 chrX 144211108 144211203 -18388727 - MER91B DNA MER1_type 0 190 91 331 278 23 53 chrX 144211222 144211355 -18388575 - MER91B DNA MER1_type -61 129 1 779 154 0 117 chrX 144211492 144211608 -18388322 - MER53 DNA DNA 0 189 108 845 109 47 47 chrX 144211608 144211801 -18388129 + L1MA7 LINE L1 6099 6291 0 779 154 0 117 chrX 144211801 144211898 -18388032 - MER53 DNA DNA -81 108 1 949 296 0 16 chrX 144212412 144212662 -18387268 - MIR SINE MIR -16 246 1 640 224 11 40 chrX 144213461 144213635 -18386295 + MER63A DNA MER1_type 34 202 -8 32 91 0 0 chrX 144213758 144213846 -18386084 + AT_rich Low_complexity Low_complexity 1 88 0 360 255 50 31 chrX 144213897 144214058 -18385872 + L1ME4a LINE L1 5945 6108 -13 451 281 0 33 chrX 144215582 144215703 -18384227 + MIR SINE MIR 33 149 -59 2272 100 0 0 chrX 144216141 144216432 -18383498 - AluSx SINE Alu -21 291 1 746 177 32 16 chrX 144217535 144217721 -18382209 + MER53 DNA DNA 1 189 0 453 19 0 0 chrX 144218956 144219010 -18380920 + (TG)n Simple_repeat Simple_repeat 2 55 0 389 273 41 16 chrX 144219233 144219354 -18380576 + MIR SINE MIR 20 143 -119 2475 76 0 0 chrX 144219968 144220271 -18379659 - AluSx SINE Alu -7 305 3 349 115 0 0 chrX 144220542 144220594 -18379336 + L1PA16 LINE L1 6107 6158 -8 185 231 92 31 chrX 144221336 144221401 -18378529 - MIR SINE MIR -119 143 75 239 273 23 62 chrX 144221538 144221592 -18378338 + LTR67 LTR ERVL 430 551 -5 242 192 41 55 chrX 144221592 144221665 -18378265 + MLT1K LTR MaLR 511 582 -6 222 91 0 0 chrX 144221821 144221854 -18378076 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 534 274 240 0 chrX 144221999 144222203 -18377727 + MIR SINE MIR 10 262 0 340 289 118 11 chrX 144222599 144222786 -18377144 + L1MC5 LINE L1 7708 7914 -47 180 77 0 0 chrX 144224004 144224030 -18375900 + (TTA)n Simple_repeat Simple_repeat 2 27 0 489 283 63 38 chrX 144224164 144224323 -18375607 - MIR SINE MIR -72 190 28 532 156 11 0 chrX 144224919 144225009 -18374921 - MER20 DNA MER1_type 0 219 129 1251 159 12 20 chrX 144225020 144225265 -18374665 + MER96B DNA MER1_type? 11 253 -164 508 178 0 0 chrX 144225346 144225436 -18374494 - MER20 DNA MER1_type -128 91 2 769 266 77 13 chrX 144225540 144225773 -18374157 + MIR SINE MIR 15 262 0 3969 162 50 16 chrX 144226413 144227215 -18372715 - L1MB7 LINE L1 -9 6175 5347 360 0 0 0 chrX 144228037 144228077 -18371853 + (T)n Simple_repeat Simple_repeat 1 40 0 419 290 21 14 chrX 144229653 144229798 -18370132 - MIR SINE MIR -70 192 47 463 312 132 15 chrX 144230339 144230544 -18369386 + MIR SINE MIR 32 260 -2 411 325 78 59 chrX 144230659 144231031 -18368899 + L2 LINE L2 2859 3237 -35 225 209 125 0 chrX 144231660 144231718 -18368212 - MIR SINE MIR -87 121 58 281 305 73 0 chrX 144232204 144232286 -18367644 + L3 LINE CR1 1475 1562 -15 453 227 0 8 chrX 144232960 144233092 -18366838 + L1MB7 LINE L1 5111 5241 -905 1159 186 114 0 chrX 144233092 144233329 -18366601 + Tigger7 DNA MER2_type 1 264 -469 365 282 0 10 chrX 144233330 144233433 -18366497 + (TA)n Simple_repeat Simple_repeat 1 102 0 506 276 0 11 chrX 144233433 144233614 -18366316 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 189 0 0 0 chrX 144233642 144233663 -18366267 + (CA)n Simple_repeat Simple_repeat 2 22 0 522 171 0 0 chrX 144233663 144233742 -18366188 + Tigger7 DNA MER2_type 2406 2487 0 4155 158 38 33 chrX 144233742 144234021 -18365909 + L1MB7 LINE L1 5240 5516 -668 1997 119 82 20 chrX 144234021 144234374 -18365556 - THE1C LTR MaLR 0 375 1 10269 114 44 7 chrX 144234374 144235897 -18364033 - THE1C-int LTR MaLR 0 1580 1 2285 141 25 5 chrX 144235897 144236265 -18363665 - THE1C LTR MaLR 0 375 1 4155 158 38 33 chrX 144236265 144236904 -18363026 + L1MB7 LINE L1 5515 6165 -19 2544 63 0 0 chrX 144238272 144238571 -18361359 - AluY SINE Alu -12 299 1 2221 101 0 41 chrX 144239305 144239622 -18360308 + AluSx SINE Alu 1 304 -8 221 376 51 26 chrX 144240343 144240460 -18359470 - L2 LINE L2 -8 3264 3145 210 235 0 0 chrX 144240861 144240912 -18359018 + MIR3 SINE MIR 150 200 -8 751 248 71 31 chrX 144240989 144241215 -18358715 - MIR SINE MIR -19 243 9 2255 96 0 3 chrX 144241278 144241571 -18358359 - AluSx SINE Alu -20 292 1 327 338 79 25 chrX 144241646 144242001 -18357929 - MARNA DNA Mariner -170 416 43 316 320 35 40 chrX 144242055 144242255 -18357675 + MIR SINE MIR 64 262 0 206 290 14 29 chrX 144243648 144243717 -18356213 - L2 LINE L2 0 3313 3246 270 239 106 56 chrX 144243772 144243914 -18356016 - MIR SINE MIR -112 150 2 363 240 42 10 chrX 144244106 144244202 -18355728 + MIR3 SINE MIR 58 156 -52 233 405 43 0 chrX 144244483 144244599 -18355331 - L2 LINE L2 -50 3222 3102 754 245 29 75 chrX 144244999 144245240 -18354690 - MIR SINE MIR -31 231 2 228 289 36 0 chrX 144245265 144245348 -18354582 - L2 LINE L2 -799 2515 2430 907 163 5 98 chrX 144245991 144246194 -18353736 - MER5A DNA MER1_type -5 184 1 6159 157 68 42 chrX 144246203 144246664 -18353266 - Charlie1a DNA MER1_type -1307 1454 1006 2418 69 3 7 chrX 144246664 144246967 -18352963 - AluSp SINE Alu -11 302 1 6159 157 68 42 chrX 144246967 144247609 -18352321 - Charlie1a DNA MER1_type -1755 1006 305 2562 51 0 0 chrX 144247609 144247904 -18352026 + AluY SINE Alu 2 296 -15 6159 157 68 42 chrX 144247904 144248217 -18351713 - Charlie1a DNA MER1_type -2456 305 1 213 182 23 0 chrX 144248247 144248291 -18351639 - L2 LINE L2 -1 3271 3227 1608 169 3 43 chrX 144248855 144249157 -18350773 + AluJb SINE Alu 1 290 -22 483 270 51 7 chrX 144250984 144251121 -18348809 - L2 LINE L2 -9 3263 3121 10468 165 10 53 chrX 144251132 144253070 -18346860 - L1M1 LINE L1 -5696 1869 15 1201 182 76 0 chrX 144253073 144253275 -18346655 - L1 LINE L1 -1532 4614 4386 441 0 0 0 chrX 144253275 144253324 -18346606 + (TG)n Simple_repeat Simple_repeat 2 50 0 1201 182 76 0 chrX 144253324 144253385 -18346545 - L1 LINE L1 -1760 4386 4331 1432 253 126 38 chrX 144253388 144253496 -18346434 + MER20B DNA MER1_type 60 157 -626 2081 128 0 3 chrX 144253496 144253824 -18346106 - AluSx SINE Alu 0 327 1 1432 253 126 38 chrX 144253824 144254292 -18345638 + MER20B DNA MER1_type 157 688 -95 453 179 0 75 chrX 144254353 144254459 -18345471 - MER5A DNA MER1_type -83 106 9 283 247 32 11 chrX 144254465 144254558 -18345372 + MER20B DNA MER1_type 680 774 -9 7290 82 9 0 chrX 144254610 144256363 -18343567 + L1PA8 LINE L1 4335 6101 -71 551 182 91 16 chrX 144256363 144256484 -18343446 - MLT2B3 LTR ERVL -424 130 1 320 272 114 70 chrX 144256490 144256648 -18343282 - MIR SINE MIR -70 192 28 2261 108 0 3 chrX 144256790 144257087 -18342843 + AluSq SINE Alu 1 296 -17 251 300 110 10 chrX 144257282 144257382 -18342548 - MIR SINE MIR -122 140 31 203 139 0 28 chrX 144257948 144257984 -18341946 - MER91B DNA MER1_type -131 59 25 1784 186 37 12 chrX 144258109 144258437 -18341493 - MLT1A1 LTR MaLR 0 365 30 2168 93 29 10 chrX 144258474 144258786 -18341144 - L1MA5A LINE L1 -5 6292 5975 347 109 0 0 chrX 144258787 144258833 -18341097 - MLT1A1 LTR MaLR -319 46 1 1130 298 51 0 chrX 144258890 144259242 -18340688 + L1ME3A LINE L1 5767 6136 -34 921 265 36 20 chrX 144259719 144259972 -18339958 - MIR SINE MIR -3 259 3 5965 30 0 10 chrX 144260206 144260877 -18339053 + L1PA5 LINE L1 5484 6147 -7 266 324 21 7 chrX 144261049 144261194 -18338736 + (TG)n Simple_repeat Simple_repeat 2 148 0 215 353 0 0 chrX 144261293 144261412 -18338518 + (TATG)n Simple_repeat Simple_repeat 4 122 0 349 275 11 33 chrX 144261434 144261616 -18338314 + (TATG)n Simple_repeat Simple_repeat 3 180 0 711 313 47 0 chrX 144261664 144261875 -18338055 + L2 LINE L2 588 808 -2506 762 225 124 22 chrX 144261877 144262287 -18337643 - MLT1H LTR MaLR -7 542 5 2872 126 178 28 chrX 144262301 144262835 -18337095 - LTR18B LTR ERVL 0 614 1 5852 247 85 60 chrX 144262835 144265281 -18334649 + L2 LINE L2 809 3305 -8 187 242 0 0 chrX 144265401 144265434 -18334496 - MIR SINE MIR -176 86 54 245 263 105 0 chrX 144265456 144265532 -18334398 - MIR SINE MIR -24 238 155 1006 236 38 4 chrX 144265539 144265776 -18334154 + MIR SINE MIR 15 259 -3 250 314 140 68 chrX 144265850 144266086 -18333844 - MIR SINE MIR -1 261 9 28 0 0 0 chrX 144266365 144266393 -18333537 + AT_rich Low_complexity Low_complexity 1 28 0 490 287 37 32 chrX 144266761 144266949 -18332981 - MIR SINE MIR -70 192 4 245 317 56 67 chrX 144267033 144267213 -18332717 - MER5A DNA MER1_type -6 183 6 3179 203 32 30 chrX 144267344 144268157 -18331773 - L1M4 LINE L1 -1125 5021 4207 394 308 20 15 chrX 144268160 144268367 -18331563 - MIR SINE MIR -48 214 9 539 330 25 4 chrX 144269207 144269443 -18330487 + MIR SINE MIR 22 262 0 223 265 0 0 chrX 144269735 144269784 -18330146 + MIR SINE MIR 166 214 -48 4333 187 36 42 chrX 144270310 144270718 -18329212 - L1MD2 LINE L1 -24 6335 5926 772 149 0 0 chrX 144270718 144270873 -18329057 + L1PA13 LINE L1 6039 6193 0 4333 187 36 42 chrX 144270873 144271081 -18328849 - L1MD2 LINE L1 -433 5926 5718 180 0 0 0 chrX 144271081 144271101 -18328829 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4333 187 36 42 chrX 144271101 144271436 -18328494 - L1MD2 LINE L1 -641 5718 5386 778 188 0 0 chrX 144271466 144271578 -18328352 - AluJb SINE Alu -199 113 2 699 216 52 18 chrX 144271581 144271857 -18328073 - L1MD2 LINE L1 -750 5396 5106 602 236 73 39 chrX 144271956 144272134 -18327796 - MIR SINE MIR -26 236 53 1723 140 38 20 chrX 144272135 144272427 -18327503 - MSTC LTR MaLR -131 297 1 1924 186 0 20 chrX 144272427 144272666 -18327264 + L1MB2 LINE L1 5692 5923 -248 1641 198 128 6 chrX 144272666 144273019 -18326911 + MSTD LTR MaLR 1 396 0 1924 186 0 20 chrX 144273019 144273133 -18326797 + L1MB2 LINE L1 5923 6038 -133 * 7041 200 40 38 chrX 144273119 144273253 -18326677 + L1MB7 LINE L1 3474 3606 -2572 934 237 6 0 chrX 144273253 144273422 -18326508 + FAM SINE Alu 1 170 -5 7041 200 40 38 chrX 144273422 144274449 -18325481 + L1MB7 LINE L1 3606 4629 -1549 1887 178 10 0 chrX 144274449 144274753 -18325177 - AluJo SINE Alu -5 307 1 7041 200 40 38 chrX 144274753 144275595 -18324335 + L1MB7 LINE L1 4629 5478 -700 3522 62 7 9 chrX 144275595 144276028 -18323902 - L1PA6 LINE L1 0 6154 5723 2828 58 0 0 chrX 144276028 144276390 -18323540 + L1P LINE L1 3212 3573 -2573 3592 152 15 63 chrX 144276413 144276804 -18323126 + L1MB7 LINE L1 5476 5818 -366 1693 139 0 0 chrX 144276804 144277042 -18322888 + AluSx SINE Alu 1 238 -74 3592 152 15 63 chrX 144277042 144277374 -18322556 + L1MB7 LINE L1 5818 6164 -20 921 142 0 8 chrX 144277456 144277590 -18322340 + FLAM_C SINE Alu 1 133 0 348 213 0 12 chrX 144277880 144277960 -18321970 - MER116 DNA Mariner 0 80 2 2300 102 7 0 chrX 144277969 144278274 -18321656 - AluSq SINE Alu -6 307 1 480 210 49 42 chrX 144278289 144278432 -18321498 - MIR SINE MIR -109 153 10 248 300 105 105 chrX 144278446 144278651 -18321279 - L2 LINE L2 -2 3270 3063 1262 296 37 28 chrX 144278651 144279111 -18320819 - LTR16B LTR ERVL 0 464 1 248 300 105 105 chrX 144279111 144279162 -18320768 - L2 LINE L2 -208 3064 3014 188 308 26 13 chrX 144279747 144279825 -18320105 + L2 LINE L2 3220 3298 -15 1106 143 5 16 chrX 144280209 144280398 -18319532 + L1M1 LINE L1 16 202 -7363 1206 110 17 0 chrX 144280398 144280571 -18319359 - AluSg/x SINE Alu -3 309 134 2357 99 0 0 chrX 144280571 144280873 -18319057 - AluSx SINE Alu -10 302 1 17324 155 31 8 chrX 144280873 144282440 -18317490 + L1M1 LINE L1 193 1858 -5707 2276 105 3 0 chrX 144282440 144282745 -18317185 + AluSq SINE Alu 1 306 -7 17324 155 31 8 chrX 144282745 144284009 -18315921 + L1M1 LINE L1 1858 3091 -4474 1242 137 5 5 chrX 144284018 144284222 -18315708 + L1PBa LINE L1 1 204 -6659 * 1413 114 59 0 chrX 144284213 144284450 -18315480 + L1PBa LINE L1 1113 1363 -5500 27727 131 15 38 chrX 144284584 144288736 -18311194 + L1MA3 LINE L1 1148 5396 -2347 234 0 0 0 chrX 144288736 144288762 -18311168 + (CAA)n Simple_repeat Simple_repeat 2 27 0 27727 131 15 38 chrX 144288762 144288992 -18310938 + L1MA3 LINE L1 5396 5630 -2113 626 130 56 0 chrX 144288992 144289090 -18310840 + L1PB2 LINE L1 6035 6148 -3 27727 131 15 38 chrX 144289090 144289277 -18310653 + L1MA3 LINE L1 5630 5820 -1923 2318 113 55 25 chrX 144289277 144289641 -18310289 - THE1C LTR MaLR 0 375 1 27727 131 15 38 chrX 144289641 144290099 -18309831 + L1MA3 LINE L1 5820 6287 -1456 2799 10 0 0 chrX 144290099 144290401 -18309529 + AluYa5 SINE Alu 1 302 -9 27727 131 15 38 chrX 144290401 144291274 -18308656 + L1MA3 LINE L1 6287 7743 0 22 0 0 0 chrX 144291274 144291296 -18308634 + AT_rich Low_complexity Low_complexity 1 22 0 235 176 0 0 chrX 144291302 144291353 -18308577 + L1MC2 LINE L1 5280 5330 -2665 * 3642 176 26 49 chrX 144291349 144291466 -18308464 + L1MC2 LINE L1 5594 5712 -632 1713 181 41 50 chrX 144291466 144291830 -18308100 + MLT1A1 LTR MaLR 3 363 -2 3642 176 26 49 chrX 144291830 144292467 -18307463 + L1MC2 LINE L1 5712 6331 -13 4552 201 24 5 chrX 144292471 144293421 -18306509 + L1MB7 LINE L1 5196 6164 -20 476 262 49 37 chrX 144293422 144293586 -18306344 - MLT1E LTR MaLR -415 178 13 1694 126 0 12 chrX 144293620 144293867 -18306063 + AluJb SINE Alu 38 281 -31 431 195 11 0 chrX 144293881 144293968 -18305962 + Charlie4 DNA MER1_type 1874 1961 0 339 275 22 11 chrX 144294295 144294386 -18305544 + MER5A DNA MER1_type 89 180 -9 820 239 72 18 chrX 144294399 144294621 -18305309 + MIR SINE MIR 28 261 -1 662 269 119 9 chrX 144294715 144294942 -18304988 + MIR SINE MIR 2 253 -9 1560 108 58 8 chrX 144295653 144295912 -18304018 + L1MA8 LINE L1 6015 6286 -5 2010 125 54 34 chrX 144296012 144296363 -18303567 + LTR32 LTR ERVL 11 368 -103 914 140 19 32 chrX 144296363 144296520 -18303410 + LTR32 LTR ERVL 317 471 0 265 178 0 0 chrX 144296827 144296872 -18303058 - L2 LINE L2 -44 3269 3225 246 217 53 5 chrX 144296880 144296943 -18302987 + MIR SINE MIR 88 151 -57 209 244 0 0 chrX 144297629 144297670 -18302260 - L2 LINE L2 -36 3236 3196 300 294 102 31 chrX 144297739 144297994 -18301936 + L1MEc LINE L1 1682 1954 -4442 3871 109 76 48 chrX 144298057 144298699 -18301231 - L1PA16 LINE L1 -10 6156 5497 3869 229 5 5 chrX 144298697 144299630 -18300300 + L1MEc LINE L1 2592 3524 -2691 550 176 80 0 chrX 144299622 144299747 -18300183 + L1P LINE L1 2236 2370 -3776 * 12889 188 34 12 chrX 144299745 144302571 -18297359 - L1PA13 LINE L1 -3894 2903 1 4433 199 22 7 chrX 144302699 144303710 -18296220 - L1 LINE L1 -1011 5135 4110 762 280 15 28 chrX 144303703 144304103 -18295827 + L1MEc LINE L1 2022 2416 -3980 * 2116 266 117 10 chrX 144304122 144305145 -18294785 + L1MEc LINE L1 2530 3662 -2553 1148 208 35 67 chrX 144305144 144305342 -18294588 + L1MEc LINE L1 4524 4706 -1509 * 4869 57 0 2 chrX 144305342 144305954 -18293976 + L1PA6 LINE L1 5543 6153 -1 1148 208 35 67 chrX 144305954 144306130 -18293800 + L1MEc LINE L1 4706 4886 -1329 1019 194 125 4 chrX 144306132 144306364 -18293566 - MER58B DNA MER1_type -1 340 81 2105 256 105 25 chrX 144308190 144308574 -18291356 + MER97b DNA MER1_type? 1 353 -700 2911 148 4 16 chrX 144308574 144309066 -18290864 - MER66B LTR ERV1 0 486 1 2105 256 105 25 chrX 144309066 144309618 -18290312 + MER97b DNA MER1_type? 353 1012 -41 299 126 9 207 chrX 144309625 144309736 -18290194 + L1MB8 LINE L1 6081 6169 -9 309 51 0 0 chrX 144309739 144309778 -18290152 + (TG)n Simple_repeat Simple_repeat 2 40 0 2680 222 65 35 chrX 144309895 144310674 -18289256 - L1ME1 LINE L1 -7 6553 5751 229 191 11 64 chrX 144310710 144310804 -18289126 + L1MC4 LINE L1 6614 6702 -1340 541 273 44 9 chrX 144310812 144311039 -18288891 - L1ME1 LINE L1 -790 5750 5516 1446 242 66 42 chrX 144311052 144311228 -18288702 - L1ME1 LINE L1 -4891 1649 1479 280 0 24 24 chrX 144311228 144311269 -18288661 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2236 75 0 4 chrX 144311272 144311551 -18288379 - AluSg SINE Alu -32 278 1 1446 242 66 42 chrX 144311551 144311945 -18287985 - L1ME1 LINE L1 -5062 1478 1061 639 282 103 7 chrX 144311943 144312369 -18287561 - L1MDa LINE L1 -3545 2584 2118 * 2760 100 10 81 chrX 144312809 144313053 -18286877 - L1PA15 LINE L1 -1 6164 5969 2227 115 120 28 chrX 144313053 144313445 -18286485 - MSTA LTR MaLR 0 428 1 2760 100 10 81 chrX 144313445 144313681 -18286249 - L1PA15 LINE L1 -196 5969 5718 280 287 107 4 chrX 144313859 144314055 -18285875 - L1MDa LINE L1 -990 1500 1242 537 251 83 108 chrX 144314060 144314590 -18285340 - L1MDa LINE L1 -4928 1191 675 2040 264 39 15 chrX 144314878 144315476 -18284454 + L2 LINE L2 2262 2873 -441 338 136 0 0 chrX 144316415 144316481 -18283449 + L1PB1 LINE L1 6086 6151 0 247 329 31 56 chrX 144317471 144317632 -18282298 - L2 LINE L2 -86 3186 3030 5400 158 38 67 chrX 144317757 144318213 -18281717 + L1MC3 LINE L1 6588 7055 -730 469 34 0 0 chrX 144318213 144318272 -18281658 + L1PA3 LINE L1 6093 6151 -4 342 0 0 0 chrX 144318275 144318313 -18281617 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5400 158 38 67 chrX 144318313 144318666 -18281264 + L1MC3 LINE L1 7057 7359 -426 2005 158 13 90 chrX 144318666 144319134 -18280796 - MSTB1 LTR MaLR 0 432 1 5400 158 38 67 chrX 144319134 144319519 -18280411 + L1MC3 LINE L1 7359 7753 -32 4576 244 53 22 chrX 144319595 144321177 -18278753 - L1M4 LINE L1 -1287 4859 3229 534 290 63 34 chrX 144321414 144321621 -18278309 + MIR SINE MIR 47 259 -3 447 301 30 0 chrX 144322433 144322566 -18277364 + MIR SINE MIR 61 197 -65 477 298 29 8 chrX 144322810 144322998 -18276932 + L1MC4a LINE L1 5499 5662 -459 277 239 30 0 chrX 144323064 144323131 -18276799 + L1MC4a LINE L1 5845 5913 -1895 180 182 0 0 chrX 144323468 144323512 -18276418 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1891 144 25 42 chrX 144324020 144324381 -18275549 + THE1A LTR MaLR 1 355 0 323 340 21 35 chrX 144324572 144324713 -18275217 - L2 LINE L2 0 3272 3134 2536 65 0 3 chrX 144324779 144325089 -18274841 + AluSc SINE Alu 1 309 0 387 0 0 0 chrX 144325614 144325657 -18274273 + (CA)n Simple_repeat Simple_repeat 1 43 0 230 352 62 23 chrX 144325899 144326027 -18273903 - L2 LINE L2 -34 3238 3106 974 278 4 8 chrX 144326383 144326635 -18273295 - MIR SINE MIR 0 262 12 706 249 57 12 chrX 144326638 144326883 -18273047 + MER112 DNA MER1_type 1 256 0 516 179 53 0 chrX 144326914 144327009 -18272921 - MER91B DNA MER1_type 0 190 91 333 278 23 53 chrX 144327028 144327161 -18272769 - MER91B DNA MER1_type -61 129 1 831 154 0 117 chrX 144327298 144327414 -18272516 - MER53 DNA DNA 0 189 108 871 109 47 47 chrX 144327414 144327607 -18272323 + L1MA7 LINE L1 6099 6291 0 831 154 0 117 chrX 144327607 144327704 -18272226 - MER53 DNA DNA -81 108 1 937 300 0 16 chrX 144328218 144328468 -18271462 - MIR SINE MIR -16 246 1 720 230 6 35 chrX 144329267 144329441 -18270489 + MER63A DNA MER1_type 34 202 -8 32 91 0 0 chrX 144329564 144329652 -18270278 + AT_rich Low_complexity Low_complexity 1 88 0 398 255 50 31 chrX 144329703 144329864 -18270066 + L1ME4a LINE L1 5945 6108 -13 443 281 0 33 chrX 144331388 144331509 -18268421 + MIR SINE MIR 33 149 -59 2265 100 0 0 chrX 144331947 144332238 -18267692 - AluSx SINE Alu -21 291 1 767 177 32 16 chrX 144333341 144333527 -18266403 + MER53 DNA DNA 1 189 0 453 19 0 0 chrX 144334762 144334816 -18265114 + (TG)n Simple_repeat Simple_repeat 2 55 0 387 273 41 16 chrX 144335039 144335160 -18264770 + MIR SINE MIR 20 143 -119 2444 77 0 0 chrX 144335774 144336074 -18263856 - AluSx SINE Alu -10 302 3 352 115 0 0 chrX 144336345 144336397 -18263533 + L1PA16 LINE L1 6107 6158 -8 189 231 92 31 chrX 144337139 144337204 -18262726 - MIR SINE MIR -119 143 75 286 201 87 155 chrX 144337249 144337468 -18262462 + MLT1K LTR MaLR 379 582 -6 222 91 0 0 chrX 144337624 144337657 -18262273 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 549 270 240 0 chrX 144337802 144338006 -18261924 + MIR SINE MIR 10 262 0 7268 118 23 0 chrX 144338405 144339535 -18260395 + L1MA2 LINE L1 1377 2532 -4331 6636 143 22 18 chrX 144339530 144341630 -18258300 + L1MA2 LINE L1 4915 7020 0 * 559 308 11 98 chrX 144342117 144342393 -18257537 + L2 LINE L2 3020 3271 -1 871 225 84 0 chrX 144342776 144342967 -18256963 + MER58C DNA MER1_type 3 209 -6 221 240 0 0 chrX 144343009 144343059 -18256871 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 268 178 45 chrX 144343426 144343583 -18256347 - MIR3 SINE MIR -15 193 16 336 200 191 0 chrX 144343595 144343710 -18256220 + L2 LINE L2 3177 3313 0 737 284 45 21 chrX 144343717 144343960 -18255970 - MIR SINE MIR 0 262 14 301 227 31 23 chrX 144344521 144344649 -18255281 - L1ME4a LINE L1 -2 6119 5991 697 119 0 20 chrX 144344785 144344908 -18255022 - AluSp/q SINE Alu 0 313 190 708 256 82 62 chrX 144344914 144345270 -18254660 - L1ME4a LINE L1 -297 5824 5462 2123 99 26 30 chrX 144345310 144345612 -18254318 - AluSc SINE Alu -8 301 1 323 271 77 8 chrX 144345612 144345804 -18254126 - L1ME4a LINE L1 -701 5461 5264 180 289 70 70 chrX 144346232 144346388 -18253542 - L2 LINE L2 -556 2758 2603 664 274 26 5 chrX 144346468 144346658 -18253272 - MIR SINE MIR -30 232 39 196 161 0 0 chrX 144346667 144346698 -18253232 + MIR SINE MIR 197 227 -35 283 275 86 43 chrX 144346848 144347050 -18252880 + MIR3 SINE MIR 10 220 -42 300 279 52 19 chrX 144347199 144347353 -18252577 - L1MC5 LINE L1 -54 7907 7749 397 103 132 0 chrX 144347770 144347838 -18252092 - MADE1 DNA Mariner -3 77 1 217 204 0 37 chrX 144348046 144348100 -18251830 - MIR SINE MIR -116 92 41 188 293 35 0 chrX 144348176 144348234 -18251696 + L2 LINE L2 3202 3261 -11 337 261 139 0 chrX 144348447 144348562 -18251368 - MIR SINE MIR -76 186 56 2450 74 0 3 chrX 144348645 144348956 -18250974 + AluSg SINE Alu 1 310 0 433 181 128 21 chrX 144349455 144349549 -18250381 - L2 LINE L2 0 3272 3169 332 258 6 24 chrX 144350599 144350766 -18249164 + CT-rich Low_complexity Low_complexity 1 164 0 183 42 0 0 chrX 144350780 144350804 -18249126 + (CGGG)n Simple_repeat Simple_repeat 4 27 0 21 0 0 0 chrX 144350856 144350877 -18249053 + GC_rich Low_complexity Low_complexity 1 21 0 283 247 32 11 chrX 144350998 144351091 -18248839 + MER20B DNA MER1_type 680 774 -9 7625 57 1 3 chrX 144351143 144352974 -18246956 + L1PA8 LINE L1 4335 6166 -6 1380 176 17 47 chrX 144352974 144353226 -18246704 + L1MB7 LINE L1 5866 6112 -72 1705 131 64 8 chrX 144353226 144353401 -18246529 - AluJb SINE Alu 0 306 108 871 49 32 0 chrX 144353401 144353524 -18246406 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1705 131 64 8 chrX 144353524 144353639 -18246291 - AluJb SINE Alu -198 108 1 1380 176 17 47 chrX 144353639 144353678 -18246252 + L1MB7 LINE L1 6112 6151 -33 1880 165 0 3 chrX 144353727 144354024 -18245906 + AluSx SINE Alu 3 298 -14 27 0 0 0 chrX 144354026 144354053 -18245877 + AT_rich Low_complexity Low_complexity 1 27 0 747 140 9 0 chrX 144354063 144354170 -18245760 + AluJb SINE Alu 171 278 -34 385 315 57 89 chrX 144354300 144354614 -18245316 + HAL1 LINE L1 92 395 -2112 602 302 70 20 chrX 144354631 144354929 -18245001 + HAL1 LINE L1 766 1078 -1429 * 5908 194 45 7 chrX 144354921 144356053 -18243877 + L1M1 LINE L1 9 1183 -6382 5735 186 27 12 chrX 144356039 144356106 -18243824 - L1M1 LINE L1 -5150 2415 2350 * 228 86 0 0 chrX 144356106 144356141 -18243789 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1932 141 11 7 chrX 144356141 144356424 -18243506 - AluSx SINE Alu -28 284 1 5735 186 27 12 chrX 144356424 144358062 -18241868 - L1M1 LINE L1 -5214 2351 12 932 196 116 18 chrX 144358063 144358288 -18241642 - ERVL-B1 LTR ERVL -5516 248 2 1238 212 39 68 chrX 144358291 144358350 -18241580 - MLT2B1 LTR ERVL -2 412 353 730 45 38 23 chrX 144358350 144358482 -18241448 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 1238 212 39 68 chrX 144358482 144358854 -18241076 - MLT2B1 LTR ERVL -61 353 5 1204 220 25 13 chrX 144358867 144359181 -18240749 - L1M4 LINE L1 -981 5165 4848 280 247 12 0 chrX 144359177 144359262 -18240668 + L1M4 LINE L1 5072 5157 -989 * 487 315 28 9 chrX 144359443 144359656 -18240274 + MIR SINE MIR 46 262 0 2279 111 3 19 chrX 144359863 144360178 -18239752 + AluSq SINE Alu 1 310 -3 754 256 52 13 chrX 144360340 144360570 -18239360 + MIR SINE MIR 11 249 -13 309 258 93 0 chrX 144361021 144361118 -18238812 - MIR3 SINE MIR -5 203 98 385 285 133 25 chrX 144361609 144361767 -18238163 - MIR3 SINE MIR -14 194 20 28 0 0 0 chrX 144362865 144362893 -18237037 + AT_rich Low_complexity Low_complexity 1 28 0 2275 113 0 0 chrX 144363035 144363337 -18236593 - AluSx SINE Alu -2 310 9 208 333 113 7 chrX 144364989 144365130 -18234800 - MIR3 SINE MIR -2 206 51 382 310 125 59 chrX 144365432 144365735 -18234195 - L2 LINE L2 -110 3162 2840 261 265 0 92 chrX 144365939 144366037 -18233893 + MIR3 SINE MIR 98 186 -22 21 0 0 0 chrX 144366775 144366796 -18233134 + GC_rich Low_complexity Low_complexity 1 21 0 243 133 0 0 chrX 144366998 144367043 -18232887 + (CCG)n Simple_repeat Simple_repeat 2 46 0 188 298 53 53 chrX 144367428 144367522 -18232408 + MIR3 SINE MIR 94 187 -21 23 33 0 0 chrX 144372180 144372210 -18227720 + AT_rich Low_complexity Low_complexity 1 30 0 794 126 47 16 chrX 144372210 144372337 -18227593 - 7SLRNA srpRNA srpRNA -21 299 169 1173 266 12 3 chrX 144372473 144372800 -18227130 + L1M4 LINE L1 4012 4341 -1805 8972 169 9 14 chrX 144372801 144374625 -18225305 + L1PA13 LINE L1 3780 5617 -546 2107 131 0 3 chrX 144374625 144374922 -18225008 + AluSx SINE Alu 1 296 -16 8972 169 9 14 chrX 144374922 144375467 -18224463 + L1PA13 LINE L1 5617 6163 0 3006 170 14 2 chrX 144375467 144375979 -18223951 + L1MA6 LINE L1 5769 6293 -7 2306 190 23 3 chrX 144375991 144376511 -18223419 + L1M4 LINE L1 5193 5728 -456 25 0 0 0 chrX 144376730 144376755 -18223175 + AT_rich Low_complexity Low_complexity 1 25 0 1645 103 9 0 chrX 144377721 144377944 -18221986 + L1PA11 LINE L1 5950 6174 0 25 65 0 0 chrX 144377944 144377990 -18221940 + AT_rich Low_complexity Low_complexity 1 46 0 225 83 0 0 chrX 144378389 144378425 -18221505 + (T)n Simple_repeat Simple_repeat 1 36 0 2843 46 0 0 chrX 144378425 144378751 -18221179 - LTR17 LTR ERV1 -454 326 1 9190 60 5 0 chrX 144378755 144379862 -18220068 - HERV17 LTR ERV1 -5 8621 7509 * 14831 54 21 0 chrX 144379854 144381651 -18218279 - HERV17 LTR ERV1 -2607 6019 4185 400 231 146 46 chrX 144382560 144382690 -18217240 + MIR SINE MIR 17 159 -103 294 263 0 12 chrX 144382741 144382821 -18217109 + MER81 DNA DNA 24 102 -12 1072 168 50 0 chrX 144382956 144383135 -18216795 - MER5A DNA MER1_type 0 189 2 520 335 26 4 chrX 144383776 144384009 -18215921 + MIR SINE MIR 22 259 -3 4407 192 31 32 chrX 144384136 144384522 -18215408 + L1M4 LINE L1 4254 4639 -1539 1887 178 10 0 chrX 144384522 144384826 -18215104 - AluJo SINE Alu -5 307 1 4407 192 31 32 chrX 144384826 144385669 -18214261 + L1M4 LINE L1 4639 5474 -704 * 6731 42 7 6 chrX 144385668 144386499 -18213431 - L1PA4 LINE L1 0 6155 5324 281 356 31 86 chrX 144386693 144387075 -18212855 + L2 LINE L2 2902 3262 -10 2100 139 3 0 chrX 144387238 144387533 -18212397 + AluSx SINE Alu 1 296 -16 306 0 0 0 chrX 144387533 144387567 -18212363 + (TA)n Simple_repeat Simple_repeat 2 35 0 247 328 109 8 chrX 144387675 144387803 -18212127 - L2 LINE L2 -5 3267 3127 24 0 0 0 chrX 144387915 144387939 -18211991 + AT_rich Low_complexity Low_complexity 1 24 0 203 170 21 0 chrX 144387984 144388031 -18211899 + CT-rich Low_complexity Low_complexity 1 48 0 2487 62 7 3 chrX 144388703 144389010 -18210920 - AluY SINE Alu -3 308 1 243 0 0 0 chrX 144389575 144389602 -18210328 + (TG)n Simple_repeat Simple_repeat 2 28 0 2297 75 4 0 chrX 144389605 144389886 -18210044 - AluSq SINE Alu -31 282 1 422 207 46 0 chrX 144389960 144390047 -18209883 - MIR SINE MIR -82 180 90 2312 108 3 0 chrX 144391040 144391347 -18208583 + AluSx SINE Alu 1 308 -4 235 236 0 18 chrX 144391355 144391410 -18208520 + MIR SINE MIR 21 74 -134 456 347 24 24 chrX 144391470 144391683 -18208247 + L3 LINE CR1 1335 1547 -30 401 230 115 0 chrX 144392567 144392654 -18207276 - MER96 DNA MER1_type? -40 135 39 1080 300 136 46 chrX 144392689 144393552 -18206378 + L2 LINE L2 1091 2046 -1268 2425 86 0 0 chrX 144393552 144393853 -18206077 - AluSx SINE Alu -11 301 1 1080 300 136 46 chrX 144393853 144393923 -18206007 + L2 LINE L2 2046 2108 -1206 503 269 103 45 chrX 144393946 144394022 -18205908 + L2 LINE L2 2296 2366 -948 378 0 0 0 chrX 144394022 144394064 -18205866 + (CA)n Simple_repeat Simple_repeat 2 43 0 503 269 103 45 chrX 144394064 144394210 -18205720 + L2 LINE L2 2366 2531 -783 301 286 0 0 chrX 144394419 144394482 -18205448 + MER5A DNA MER1_type 9 71 -118 3094 40 0 0 chrX 144394484 144394832 -18205098 - L1PA7 LINE L1 0 6154 5807 2191 94 0 24 chrX 144395074 144395371 -18204559 + AluY SINE Alu 1 290 -21 2118 94 24 0 chrX 144395382 144395669 -18204261 + AluSq SINE Alu 5 298 -15 191 329 0 86 chrX 144395984 144396124 -18203806 - MIR SINE MIR -81 181 54 769 192 80 45 chrX 144396329 144396553 -18203377 + MER106A DNA MER1_type 1 232 -4 576 288 18 27 chrX 144396798 144397020 -18202910 + MIR SINE MIR 16 235 -27 205 320 86 8 chrX 144397103 144397231 -18202699 - L2 LINE L2 0 3313 3176 520 254 15 0 chrX 144397620 144397750 -18202180 + L2 LINE L2 3182 3313 0 1102 221 79 33 chrX 144398021 144398408 -18201522 - MSTC LTR MaLR 0 428 1 569 226 132 47 chrX 144398923 144399113 -18200817 + MIR SINE MIR 31 236 -26 610 250 39 6 chrX 144399284 144399464 -18200466 + L1M4 LINE L1 5211 5396 -750 11884 111 26 28 chrX 144600615 144602971 -17996959 - L1P3 LINE L1 -3625 2836 395 216 0 0 0 chrX 144602971 144602995 -17996935 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 11884 111 26 28 chrX 144602995 144603389 -17996541 - L1P3 LINE L1 -6066 395 2 789 135 83 6 chrX 144603389 144603545 -17996385 - L1P LINE L1 -1731 4415 4248 310 264 18 27 chrX 144603566 144603790 -17996140 - L1ME LINE L1 -683 5487 5266 22 56 0 0 chrX 144603890 144603926 -17996004 + AT_rich Low_complexity Low_complexity 1 36 0 194 302 119 8 chrX 144604466 144604592 -17995338 + MIR SINE MIR 65 204 -58 3045 196 26 15 chrX 144604592 144605313 -17994617 - Tigger6a DNA MER2_type -1 1082 354 1635 186 29 6 chrX 144605568 144605913 -17994017 - Tigger6a DNA MER2_type -726 357 5 188 189 27 0 chrX 144605929 144605966 -17993964 + L2 LINE L2 3219 3256 -16 408 196 18 179 chrX 144607885 144608053 -17991877 + MIR3 SINE MIR 6 146 -62 363 96 0 0 chrX 144608061 144608113 -17991817 + (CA)n Simple_repeat Simple_repeat 2 53 0 195 176 0 0 chrX 144608116 144608150 -17991780 + L2 LINE L2 3268 3301 -12 21 57 0 0 chrX 144608451 144608486 -17991444 + AT_rich Low_complexity Low_complexity 1 35 0 3170 50 8 0 chrX 144608523 144608922 -17991008 - L1PA7 LINE L1 0 6154 5753 1280 294 54 2 chrX 144609180 144609771 -17990159 - L1ME3A LINE L1 -230 5923 5302 563 293 54 25 chrX 144609786 144610210 -17989720 - L1MEd LINE L1 -3746 2423 1984 630 85 0 0 chrX 144610422 144610516 -17989414 - L1MA4 LINE L1 -11 6289 6196 280 271 134 27 chrX 144610543 144610805 -17989125 - L1MEd LINE L1 -4439 1690 1401 928 296 55 82 chrX 144610844 144611354 -17988576 - L1MEd LINE L1 -4865 1254 832 1419 131 19 109 chrX 144611354 144611695 -17988235 + AluJb SINE Alu 1 313 0 928 296 55 82 chrX 144611695 144612227 -17987703 - L1MEd LINE L1 -5287 832 287 303 268 24 24 chrX 144612401 144612528 -17987402 - L1MEd LINE L1 -5981 138 12 1956 107 38 0 chrX 144612815 144613101 -17986829 + AluSx SINE Alu 13 308 0 641 260 6 52 chrX 144613378 144613551 -17986379 - MER5B DNA MER1_type -13 165 1 692 221 68 0 chrX 144613559 144613722 -17986208 - MER5A DNA MER1_type 0 189 16 284 351 61 45 chrX 144613745 144613990 -17985940 + L2 LINE L2 2703 2951 -363 3348 173 51 70 chrX 144613996 144614484 -17985446 - L1MA9 LINE L1 -25 6287 5824 477 0 0 0 chrX 144614484 144614537 -17985393 + (CA)n Simple_repeat Simple_repeat 2 54 0 3348 173 51 70 chrX 144614537 144614973 -17984957 - L1MA9 LINE L1 -488 5824 5381 217 182 45 0 chrX 144615087 144615131 -17984799 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 440 274 163 7 chrX 144615306 144615459 -17984471 + MER5A DNA MER1_type 10 186 -3 180 297 0 0 chrX 144615460 144615497 -17984433 + L2 LINE L2 3246 3282 -31 1466 189 124 0 chrX 144615499 144615806 -17984124 + MER7A DNA MER2_type 1 343 -3 22 35 0 0 chrX 144616550 144616579 -17983351 + AT_rich Low_complexity Low_complexity 1 29 0 546 39 15 93 chrX 144616874 144617154 -17982776 + (TA)n Simple_repeat Simple_repeat 1 258 0 676 311 19 10 chrX 144617569 144617775 -17982155 + MIR SINE MIR 4 211 -51 1202 241 38 43 chrX 144617775 144618174 -17981756 - MLT2C1 LTR ERVL 0 397 1 351 306 57 53 chrX 144618282 144618491 -17981439 + MIR SINE MIR 7 216 -46 411 262 106 0 chrX 144618543 144618684 -17981246 + MIR SINE MIR 103 258 -4 699 300 95 30 chrX 144620272 144620609 -17979321 + L2 LINE L2 2463 2821 -493 1905 128 82 20 chrX 144621065 144621418 -17978512 - THE1C LTR MaLR 0 375 1 578 315 95 29 chrX 144621421 144621767 -17978163 + L2 LINE L2 2944 3312 -1 242 226 19 0 chrX 144621968 144622021 -17977909 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 183 80 0 0 chrX 144622609 144622634 -17977296 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 1643 167 64 0 chrX 144625286 144625598 -17974332 + MER44D DNA MER2_type 5 606 -3 688 232 6 12 chrX 144625684 144625852 -17974078 + MLT1E LTR MaLR 10 176 -417 * 1145 212 30 37 chrX 144625841 144626224 -17973706 + MLT1E LTR MaLR 119 593 0 486 0 0 0 chrX 144626274 144626328 -17973602 + (TG)n Simple_repeat Simple_repeat 1 54 0 2096 79 7 7 chrX 144626328 144626606 -17973324 - AluY SINE Alu -33 278 1 1968 152 13 7 chrX 144627089 144627399 -17972531 - AluSx SINE Alu 0 312 1 26 30 0 0 chrX 144628558 144628591 -17971339 + AT_rich Low_complexity Low_complexity 1 33 0 203 300 0 0 chrX 144629122 144629182 -17970748 + (CA)n Simple_repeat Simple_repeat 1 60 0 515 266 111 33 chrX 144629712 144629783 -17970147 - MIR SINE MIR -6 256 192 1013 200 37 19 chrX 144629783 144629998 -17969932 - MER20 DNA MER1_type 0 219 1 515 266 111 33 chrX 144629998 144630158 -17969772 - MIR SINE MIR -70 192 11 2063 138 48 25 chrX 144630186 144630542 -17969388 + THE1B LTR MaLR 1 364 0 5767 90 22 6 chrX 144630542 144631366 -17968564 + THE1B-int LTR MaLR 1 837 -743 376 197 0 0 chrX 144631368 144631434 -17968496 + THE1C LTR MaLR 310 375 0 403 339 133 6 chrX 144631699 144631864 -17968066 + MIR3 SINE MIR 12 197 -11 702 205 35 18 chrX 144632678 144632849 -17967081 - MER5B DNA MER1_type -3 175 2 253 326 115 26 chrX 144633064 144633334 -17966596 + L2 LINE L2 2241 2534 -780 423 265 59 53 chrX 144633445 144633615 -17966315 - MER5B DNA MER1_type -7 171 1 220 349 98 5 chrX 144633677 144633892 -17966038 + L2 LINE L2 2705 2939 -375 218 258 60 60 chrX 144633951 144634102 -17965828 + L2 LINE L2 3105 3255 -58 287 217 21 168 chrX 144635768 144635911 -17964019 + L3 LINE CR1 335 456 -1121 * 1460 279 51 42 chrX 144635910 144636477 -17963453 - L2 LINE L2 0 3313 2748 508 278 81 84 chrX 144636497 144636677 -17963253 + L3 LINE CR1 483 663 -914 504 280 119 17 chrX 144636677 144636913 -17963017 - MIR SINE MIR 0 262 3 508 278 81 84 chrX 144636913 144637005 -17962925 + L3 LINE CR1 663 754 -823 261 0 0 0 chrX 144637042 144637071 -17962859 + (CA)n Simple_repeat Simple_repeat 2 30 0 253 279 86 7 chrX 144637083 144637223 -17962707 + MER112 DNA MER1_type 109 259 -1 2023 141 0 23 chrX 144637981 144638287 -17961643 + AluSc SINE Alu 1 299 -10 28 48 0 0 chrX 144638596 144638638 -17961292 + AT_rich Low_complexity Low_complexity 1 42 0 240 248 58 16 chrX 144639017 144639089 -17960841 + MIR3 SINE MIR 11 83 -137 304 275 33 11 chrX 144639554 144639645 -17960285 - MER5A DNA MER1_type -88 101 9 774 229 6 6 chrX 144639664 144639839 -17960091 - MER5B DNA MER1_type -3 175 1 461 312 55 83 chrX 144639846 144640208 -17959722 + L3 LINE CR1 1122 1473 -104 800 149 41 56 chrX 144640238 144640433 -17959497 - THE1C LTR MaLR 0 375 184 495 81 0 14 chrX 144640431 144640505 -17959425 - THE1C LTR MaLR -355 73 1 * 387 0 0 0 chrX 144640950 144640993 -17958937 + (CA)n Simple_repeat Simple_repeat 1 43 0 216 179 0 0 chrX 144641066 144641105 -17958825 + (TG)n Simple_repeat Simple_repeat 2 40 0 269 269 153 56 chrX 144641187 144641408 -17958522 + MIR SINE MIR 5 262 0 568 241 139 0 chrX 144641713 144641871 -17958059 - MIR SINE MIR -11 251 72 898 294 16 6 chrX 144641884 144642207 -17957723 + MER46C DNA MER2_type 3 328 -10 293 240 110 10 chrX 144643200 144643300 -17956630 - MIR SINE MIR 0 262 153 2258 103 17 14 chrX 144643301 144643650 -17956280 - L1PA14 LINE L1 -3 6158 5809 2790 175 11 0 chrX 144643661 144644209 -17955721 - L1MB7 LINE L1 -1 6183 5630 780 258 0 56 chrX 144644313 144644546 -17955384 + MIR SINE MIR 15 234 -28 941 256 31 27 chrX 144644965 144645223 -17954707 + MIR SINE MIR 4 262 0 885 271 13 43 chrX 144645312 144645701 -17954229 - MLT1H1 LTR MaLR -13 577 117 234 295 0 16 chrX 144645702 144645763 -17954167 - MIR SINE MIR -180 82 23 295 338 14 21 chrX 144646641 144646783 -17953147 - MIR SINE MIR -11 251 111 316 310 97 104 chrX 144646828 144647270 -17952660 + L2 LINE L2 2824 3262 -10 181 296 23 0 chrX 144647276 144647320 -17952610 - MIR SINE MIR -88 120 76 1046 206 64 30 chrX 144647502 144647735 -17952195 + MIR SINE MIR 1 241 -21 1054 196 36 47 chrX 144647785 144648061 -17951869 + MLT1C LTR MaLR 53 325 -142 1779 190 90 28 chrX 144648437 144648906 -17951024 - MLT1D LTR MaLR -7 498 1 180 326 93 36 chrX 144648961 144649154 -17950776 + L2 LINE L2 566 769 -2545 1513 213 88 22 chrX 144650390 144650799 -17949131 - MER63B DNA MER1_type 0 436 1 466 188 9 9 chrX 144651773 144651885 -17948045 + CT-rich Low_complexity Low_complexity 1 112 0 23 0 0 0 chrX 144651894 144651917 -17948013 + AT_rich Low_complexity Low_complexity 1 23 0 1567 165 22 11 chrX 144652044 144652316 -17947614 - AluJo SINE Alu -26 286 12 223 344 0 40 chrX 144653030 144653155 -17946775 - L2 LINE L2 -638 2676 2557 388 273 70 48 chrX 144654458 144654645 -17945285 + L2 LINE L2 2367 2557 -757 6650 130 20 4 chrX 144654646 144656481 -17943449 + L1MA2 LINE L1 4438 6304 0 26 0 0 0 chrX 144656481 144656507 -17943423 + AT_rich Low_complexity Low_complexity 1 26 0 946 268 85 54 chrX 144656526 144657254 -17942676 + L2 LINE L2 2550 3313 0 10700 43 0 0 chrX 144659744 144661839 -17938091 + L1PA6 LINE L1 4055 6149 -5 707 286 6 0 chrX 144663027 144663195 -17936735 - L2 LINE L2 -266 3047 2879 8163 175 57 28 chrX 144663406 144663540 -17936390 + L1MC3 LINE L1 5167 5296 -2489 2638 36 0 13 chrX 144663540 144663848 -17936082 + AluY SINE Alu 1 304 -7 8163 175 57 28 chrX 144663848 144666161 -17933769 + L1MC3 LINE L1 5296 7783 -2 757 243 31 27 chrX 144666188 144666410 -17933520 + MIR SINE MIR 28 250 -12 2190 131 73 14 chrX 144667777 144668121 -17931809 - THE1B LTR MaLR 0 364 1 1843 114 0 37 chrX 144668717 144669014 -17930916 - L1PA10 LINE L1 0 6168 5883 253 327 149 0 chrX 144669517 144669624 -17930306 - L2 LINE L2 -1 3271 3149 416 277 12 4 chrX 144670005 144670163 -17929767 - HAL1b LINE L1 -803 545 422 226 179 54 0 chrX 144671172 144671228 -17928702 - L1ME4a LINE L1 -1 6120 6062 9649 154 32 18 chrX 144671973 144674144 -17925786 - L1MA8 LINE L1 -2 7708 5568 2339 112 38 11 chrX 144674144 144674509 -17925421 + THE1C LTR MaLR 1 375 0 10565 113 29 7 chrX 144674509 144676050 -17923880 + THE1C-int LTR MaLR 1 1576 -4 2089 133 53 14 chrX 144676054 144676415 -17923515 + THE1C LTR MaLR 1 375 0 9649 154 32 18 chrX 144676415 144677194 -17922736 - L1MA8 LINE L1 -2144 5566 4708 452 65 0 0 chrX 144677204 144677266 -17922664 - L1PA8 LINE L1 -4 6168 6107 7181 91 4 18 chrX 144677306 144678366 -17921564 - MER11C LTR ERVK -26 1045 1 5978 80 7 3 chrX 144678368 144679558 -17920372 - L1PA7 LINE L1 -60 6409 5215 4396 103 9 1 chrX 144679558 144680244 -17919686 - L1PA7 LINE L1 -2287 4174 3484 * 9282 101 4 8 chrX 144680229 144681579 -17918351 - L1PA7 LINE L1 -5076 1385 42 269 105 0 0 chrX 144681633 144681671 -17918259 + Tigger4(Zombi) DNA MER2_type 2694 2731 0 4307 236 50 33 chrX 144681792 144683430 -17916500 - L1MA8 LINE L1 -3892 3673 2008 1874 234 12 62 chrX 144683537 144684139 -17915791 - L1MA8 LINE L1 -6452 1037 466 246 376 40 24 chrX 144684319 144684444 -17915486 - L2 LINE L2 -1 3271 3145 208 352 0 63 chrX 144684724 144684883 -17915047 - L2 LINE L2 -457 2857 2709 * 403 357 0 0 chrX 144684872 144685001 -17914929 + L2 LINE L2 3134 3262 -10 2414 95 0 3 chrX 144685048 144685354 -17914576 + AluY SINE Alu 1 305 -6 1635 182 128 22 chrX 144685892 144686250 -17913680 - MSTD LTR MaLR 0 396 1 2383 96 0 10 chrX 144687342 144687654 -17912276 + AluSx SINE Alu 1 309 -3 3488 66 7 0 chrX 144687917 144688374 -17911556 - L1PA8 LINE L1 -6 6166 5707 3023 72 7 0 chrX 144688374 144688791 -17911139 + L1PA8 LINE L1 5285 5704 -427 342 265 78 21 chrX 144689096 144689223 -17910707 - MIR SINE MIR -66 142 14 214 205 0 0 chrX 144692470 144692509 -17907421 + (TTA)n Simple_repeat Simple_repeat 3 41 0 347 212 30 98 chrX 144692669 144692801 -17907129 - HAL1b LINE L1 -433 915 793 255 297 12 36 chrX 144692864 144693029 -17906901 - HAL1b LINE L1 -437 911 751 368 159 0 0 chrX 144693034 144693103 -17906827 - MER116 DNA Mariner -5 75 7 614 110 20 0 chrX 144693104 144693204 -17906726 + L1 LINE L1 4201 4302 -1844 431 238 119 7 chrX 144693310 144693461 -17906469 + L2 LINE L2 2186 2353 -961 581 94 0 0 chrX 144693488 144693573 -17906357 - L1MA2 LINE L1 -3 6301 6217 20665 184 22 19 chrX 144693580 144700598 -17899332 + L1PA13 LINE L1 7 7583 -18 751 98 105 0 chrX 144700622 144700755 -17899175 - L1MA2 LINE L1 -91 6213 6067 1520 284 37 40 chrX 144700784 144701694 -17898236 + L2 LINE L2 2400 3303 -10 200 180 0 20 chrX 144701799 144701849 -17898081 + CT-rich Low_complexity Low_complexity 4 52 0 280 253 42 0 chrX 144702102 144702197 -17897733 - HAL1 LINE L1 -866 1641 1543 181 132 0 79 chrX 144702234 144702272 -17897658 - MER5B DNA MER1_type -66 112 78 2148 286 120 38 chrX 144702300 144703514 -17896416 - L2 LINE L2 -1 3312 2010 891 151 7 0 chrX 144703622 144703774 -17896156 - L1PA15 LINE L1 -96 6069 5917 307 392 20 13 chrX 144703785 144703938 -17895992 - HAL1 LINE L1 -1575 932 779 1728 140 37 4 chrX 144704202 144704507 -17895423 - AluSx SINE Alu 0 316 3 210 37 0 0 chrX 144704519 144704546 -17895384 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 405 291 93 7 chrX 144705250 144705401 -17894529 - MIR SINE MIR -63 199 36 24 0 0 0 chrX 144705509 144705533 -17894397 + AT_rich Low_complexity Low_complexity 1 24 0 2510 122 44 36 chrX 144706064 144706514 -17893416 - MSTB2 LTR MaLR 0 457 4 311 333 34 34 chrX 144708423 144708630 -17891300 + MIR SINE MIR 56 262 0 191 337 80 0 chrX 144708643 144708767 -17891163 - MIR SINE MIR -70 138 37 1970 203 68 31 chrX 144708821 144709308 -17890622 - MLT1D LTR MaLR 0 505 1 207 241 46 0 chrX 144709850 144709937 -17889993 + (CATA)n Simple_repeat Simple_repeat 2 92 0 360 368 35 7 chrX 144710078 144710222 -17889708 - L2 LINE L2 -18 3254 3107 665 160 35 7 chrX 144710247 144710391 -17889539 - MER96B DNA MER1_type? -5 412 265 481 159 0 34 chrX 144710398 144710486 -17889444 - MLT1D LTR MaLR -420 85 1 23 0 0 0 chrX 144711402 144711425 -17888505 + AT_rich Low_complexity Low_complexity 1 23 0 288 254 7 14 chrX 144711576 144711718 -17888212 + (TA)n Simple_repeat Simple_repeat 1 141 0 1583 298 103 16 chrX 144711761 144712490 -17887440 + L2 LINE L2 1931 2722 -592 517 270 111 29 chrX 144712525 144712903 -17887027 + L1MC4a LINE L1 5766 6174 -1634 666 325 63 45 chrX 144712908 144713172 -17886758 + L2 LINE L2 2746 3004 -309 1696 184 10 23 chrX 144713172 144713471 -17886459 + AluJo SINE Alu 1 295 -17 666 325 63 45 chrX 144713471 144713767 -17886163 + L2 LINE L2 3004 3313 0 398 336 52 12 chrX 144713775 144714094 -17885836 - L1ME4a LINE L1 -254 5867 5341 208 343 34 57 chrX 144714096 144714271 -17885659 + L2 LINE L2 2531 2701 -613 272 273 20 61 chrX 144714485 144714584 -17885346 + L2 LINE L2 2952 3046 -226 210 311 0 33 chrX 144714749 144714810 -17885120 + L2 LINE L2 3205 3263 -9 556 316 77 67 chrX 144714821 144715129 -17884801 - L1ME4a LINE L1 -828 5318 5000 2252 97 0 19 chrX 144715129 144715440 -17884490 + AluY SINE Alu 1 305 -6 556 316 77 67 chrX 144715440 144715700 -17884230 - L1ME4a LINE L1 -1146 5000 4744 301 321 16 32 chrX 144715822 144716071 -17883859 - L1ME4a LINE L1 -1495 4651 4407 850 261 36 20 chrX 144716195 144716444 -17883486 + MIR SINE MIR 5 257 -5 2129 141 33 25 chrX 144717213 144717574 -17882356 + THE1B LTR MaLR 1 364 0 10729 108 32 14 chrX 144717574 144719126 -17880804 + THE1B-int LTR MaLR 1 1580 0 2262 133 33 25 chrX 144719126 144719487 -17880443 + THE1B LTR MaLR 1 364 0 450 374 18 6 chrX 144719560 144719731 -17880199 - MIR3 SINE MIR -17 191 19 40545 50 8 1 chrX 144720500 144726604 -17873326 - L1PA4 LINE L1 -3 6152 2 2271 143 67 31 chrX 144726634 144727053 -17872877 + Tigger2a DNA MER2_type 1 434 0 955 234 0 43 chrX 144727088 144727319 -17872611 + MER58A DNA MER1_type 1 221 -3 225 94 0 0 chrX 144727731 144727763 -17872167 + (CA)n Simple_repeat Simple_repeat 1 32 0 1579 192 3 23 chrX 144727898 144728200 -17871730 + AluJo SINE Alu 1 296 -16 639 276 74 15 chrX 144728564 144728767 -17871163 + MIR SINE MIR 48 262 0 522 249 76 72 chrX 144728702 144728939 -17870991 - MIR SINE MIR -17 245 8 * 351 258 157 6 chrX 144728940 144729099 -17870831 - MER5A DNA MER1_type 0 189 7 696 302 64 52 chrX 144729472 144730112 -17869818 - L2 LINE L2 -3 3310 2622 683 296 40 6 chrX 144730214 144730448 -17869482 - MIR SINE MIR -3 259 20 321 26 0 0 chrX 144731225 144731263 -17868667 + (CA)n Simple_repeat Simple_repeat 1 38 0 339 251 41 19 chrX 144731680 144731817 -17868113 + MIR SINE MIR 24 146 -62 287 194 0 3 chrX 144732272 144732329 -17867601 - MIR SINE MIR -67 141 93 1326 257 177 31 chrX 144732490 144733056 -17866874 + L2 LINE L2 2158 2821 -493 2621 35 0 19 chrX 144733056 144733370 -17866560 - AluY SINE Alu -3 308 1 1326 257 177 31 chrX 144733370 144733414 -17866516 + L2 LINE L2 2821 2857 -457 206 125 0 25 chrX 144733419 144733459 -17866471 + (TTC)n Simple_repeat Simple_repeat 2 40 0 412 257 14 42 chrX 144733498 144733642 -17866288 + L2 LINE L2 2864 3003 -310 256 346 50 10 chrX 144733875 144733976 -17865954 + L2 LINE L2 3167 3271 -1 679 290 48 8 chrX 144734067 144734315 -17865615 - MIR SINE MIR -1 261 4 300 250 0 13 chrX 144734994 144735070 -17864860 + L2 LINE L2 3191 3265 -7 308 181 12 0 chrX 144735080 144735163 -17864767 + (TA)n Simple_repeat Simple_repeat 2 85 0 350 220 55 0 chrX 144735829 144735920 -17864010 - L2 LINE L2 -7 3265 3170 369 0 0 0 chrX 144736927 144736968 -17862962 + (TC)n Simple_repeat Simple_repeat 1 41 0 272 320 26 67 chrX 144738213 144738482 -17861448 + L2 LINE L2 3035 3292 -21 375 347 48 41 chrX 144738607 144738754 -17861176 - L2 LINE L2 0 3272 3125 248 307 18 30 chrX 144738835 144739001 -17860929 + L1MC2 LINE L1 5843 6006 -338 * 1167 201 19 42 chrX 144738869 144739182 -17860748 + L1MB7 LINE L1 5877 6182 -2 436 275 119 0 chrX 144739184 144739293 -17860637 - MER5B DNA MER1_type -56 122 1 2645 173 68 17 chrX 144739501 144740017 -17859913 + MER44D DNA MER2_type 8 604 -1 404 299 67 12 chrX 144740842 144741006 -17858924 - MER5A DNA MER1_type -10 179 7 1468 188 33 72 chrX 144742737 144743126 -17856804 - MLT1A2 LTR MaLR 0 374 1 302 330 45 7 chrX 144743803 144744090 -17855840 + L1ME LINE L1 5198 5494 -672 1456 258 119 15 chrX 144744210 144744748 -17855182 - MLT1G1 LTR MaLR -1 594 1 1889 179 0 0 chrX 144744953 144745244 -17854686 + AluSx SINE Alu 6 296 -16 201 290 0 0 chrX 144745281 144745350 -17854580 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1004 257 9 51 chrX 144745633 144745724 -17854206 + Tigger7 DNA MER2_type 1 94 -639 2021 123 3 17 chrX 144745724 144746026 -17853904 + AluSq SINE Alu 1 298 -15 1004 257 9 51 chrX 144746026 144746265 -17853665 + Tigger7 DNA MER2_type 94 317 -416 32519 46 8 0 chrX 144746265 144752343 -17847587 - L1PA4 LINE L1 -24 6131 9 495 245 0 9 chrX 144752349 144752455 -17847475 - L2 LINE L2 -14 3299 3195 6503 104 1 2 chrX 144752527 144753424 -17846506 + L1PA10 LINE L1 5273 6168 0 714 164 0 16 chrX 144753424 144753552 -17846378 + L1MB7 LINE L1 6048 6173 -11 725 279 107 0 chrX 144754504 144754701 -17845229 - MER20 DNA MER1_type 0 219 2 336 248 21 103 chrX 144755597 144755742 -17844188 + MIR SINE MIR 125 257 -5 182 229 0 82 chrX 144755768 144755829 -17844101 + L2 LINE L2 3217 3272 0 471 317 21 17 chrX 144756886 144757081 -17842849 - MIR SINE MIR -62 146 4 20140 163 56 14 chrX 144758206 144760956 -17838974 + L1M1 LINE L1 16 2651 -5072 2392 124 114 10 chrX 144760956 144761343 -17838587 + MSTA LTR MaLR 2 428 0 20140 163 56 14 chrX 144761343 144761816 -17838114 + L1M1 LINE L1 2651 3103 -4620 297 0 0 0 chrX 144761816 144761849 -17838081 + (CA)n Simple_repeat Simple_repeat 2 34 0 20140 163 56 14 chrX 144761849 144763423 -17836507 + L1M1 LINE L1 3103 4610 -3113 860 102 15 0 chrX 144763423 144763560 -17836370 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 20140 163 56 14 chrX 144763560 144765638 -17834292 + L1M1 LINE L1 4610 7203 -520 6077 141 17 12 chrX 144765642 144766665 -17833265 + L1P LINE L1 3107 4134 -2012 601 224 135 33 chrX 144766667 144766912 -17833018 + MLT1H1 LTR MaLR 273 542 -13 1058 231 50 35 chrX 144766917 144766965 -17832965 - L1M4 LINE L1 -501 5673 5627 2187 108 27 0 chrX 144766965 144767262 -17832668 + AluSp SINE Alu 1 305 -8 1058 231 50 35 chrX 144767262 144767670 -17832260 - L1M4 LINE L1 -547 5627 5222 43135 58 6 1 chrX 144767681 144773776 -17826154 - L1PA5 LINE L1 -9 6145 13 664 271 50 36 chrX 144773788 144774150 -17825780 - L1M4 LINE L1 -913 5233 4867 232 333 0 0 chrX 144774143 144774245 -17825685 - L1MC4 LINE L1 -1327 6715 6614 * 1747 189 0 0 chrX 144774258 144774576 -17825354 + L1P LINE L1 4129 4446 -1700 2483 127 33 5 chrX 144774576 144774965 -17824965 + L1PA12 LINE L1 5765 6168 0 3286 124 35 0 chrX 144774965 144775479 -17824451 + L1MA2 LINE L1 5769 6300 -4 824 220 34 0 chrX 144777171 144777348 -17822582 - MER5A DNA MER1_type -6 183 1 1797 221 65 8 chrX 144777368 144777739 -17822191 - MSTD LTR MaLR -2 394 3 2401 254 61 51 chrX 144778050 144778281 -17821649 + L2 LINE L2 1270 1497 -1817 2564 158 20 5 chrX 144778281 144778337 -17821593 - MLT2D LTR ERVL -4 410 356 606 82 0 0 chrX 144778337 144778422 -17821508 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 2564 158 20 5 chrX 144778422 144778769 -17821161 - MLT2D LTR ERVL -58 356 1 2401 254 61 51 chrX 144778769 144779472 -17820458 + L2 LINE L2 1497 2213 -1101 13171 36 4 0 chrX 144779472 144781037 -17818893 - L1PA3 LINE L1 -1382 4764 3194 7993 31 2 0 chrX 144781037 144782426 -17817504 + L1PA3 LINE L1 4764 6155 0 936 236 66 9 chrX 144782560 144782772 -17817158 + MER58A DNA MER1_type 1 224 0 369 296 108 23 chrX 144782773 144782949 -17816981 - L2 LINE L2 -211 3061 2871 353 316 184 0 chrX 144783022 144783174 -17816756 - MER5A DNA MER1_type 0 189 10 * 567 325 73 14 chrX 144783145 144783431 -17816499 - L2 LINE L2 -759 2555 2253 279 253 82 47 chrX 144783539 144783709 -17816221 - L2 LINE L2 -1810 1504 1329 603 268 16 68 chrX 144783779 144783969 -17815961 + MIR3 SINE MIR 4 183 -25 198 158 207 49 chrX 144784243 144784325 -17815605 - MIR SINE MIR -79 183 89 2336 85 3 0 chrX 144785389 144785682 -17814248 - AluSq SINE Alu -19 294 1 1766 151 105 0 chrX 144787637 144787961 -17811969 + MLT1B LTR MaLR 2 359 -31 1243 122 77 0 chrX 144788064 144788260 -17811670 - MER2 DNA MER2_type -134 211 1 382 256 41 4 chrX 144788940 144789065 -17810865 - LTR43 LTR ERV1 -207 472 190 6266 110 16 7 chrX 144789263 144790323 -17809607 + L1PB2 LINE L1 5080 6151 0 949 321 57 47 chrX 144790361 144791084 -17808846 - MER66-int LTR ERV1 0 6676 5947 2351 318 51 48 chrX 144792363 144792812 -17807118 - MER66-int LTR ERV1 -1595 6161 5715 207 0 0 0 chrX 144792812 144792835 -17807095 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2351 318 51 48 chrX 144792835 144794869 -17805061 - MER66-int LTR ERV1 -2041 5715 2987 11464 173 6 3 chrX 144794869 144797629 -17802301 + L1PA13 LINE L1 3413 6163 0 2444 78 3 7 chrX 144797629 144797936 -17801994 + AluY SINE Alu 1 306 -5 363 230 18 18 chrX 144797939 144798052 -17801878 + L1M4 LINE L1 5194 5306 -840 8252 22 0 0 chrX 144798066 144799495 -17800435 - L1PA3 LINE L1 -3 6152 4724 454 333 20 44 chrX 144799859 144800153 -17799777 - MER66-int LTR ERV1 -5019 1657 1371 225 246 43 0 chrX 144800899 144800968 -17798962 + GA-rich Low_complexity Low_complexity 1 72 0 409 240 53 47 chrX 144801345 144801526 -17798404 - LTR43 LTR ERV1 -214 465 132 455 329 24 6 chrX 144801928 144802098 -17797832 - MIR SINE MIR -87 175 3 347 239 132 57 chrX 144802550 144802709 -17797221 - MIR SINE MIR -1 261 91 186 250 88 75 chrX 144803569 144803649 -17796281 - MIR SINE MIR -3 259 179 217 275 101 36 chrX 144804318 144804456 -17795474 - MIR3 SINE MIR -25 183 37 2382 106 3 0 chrX 144804831 144805142 -17794788 - AluSx SINE Alu 0 312 1 207 152 15 106 chrX 144805422 144805488 -17794442 - MIR SINE MIR -102 160 101 652 297 114 0 chrX 144805494 144805713 -17794217 + MIR SINE MIR 19 262 0 25 0 0 0 chrX 144806282 144806307 -17793623 + AT_rich Low_complexity Low_complexity 1 25 0 2332 151 10 3 chrX 144806516 144806901 -17793029 + MLT1B LTR MaLR 3 390 0 195 227 45 0 chrX 144807458 144807502 -17792428 - L2 LINE L2 -38 3234 3189 13220 197 31 15 chrX 144807647 144809910 -17790020 + L1MA4A LINE L1 2 2228 -4777 2102 102 53 3 chrX 144809910 144810194 -17789736 + AluSg SINE Alu 1 298 -12 13220 197 31 15 chrX 144810194 144813831 -17786099 + L1MA4A LINE L1 2228 6017 -988 207 0 0 0 chrX 144813831 144813854 -17786076 + (CAA)n Simple_repeat Simple_repeat 2 24 0 13220 197 31 15 chrX 144813854 144814327 -17785603 + L1MA4A LINE L1 6017 6481 -524 310 282 47 0 chrX 144814332 144814417 -17785513 + L1MC4 LINE L1 6615 6703 -1339 225 216 0 0 chrX 144814425 144814476 -17785454 - L1MC4 LINE L1 -1339 6703 6653 507 177 0 0 chrX 144814477 144814573 -17785357 + (CATA)n Simple_repeat Simple_repeat 4 99 0 2777 157 15 11 chrX 144814581 144815105 -17784825 + L1MA4A LINE L1 6476 7001 -4 725 217 8 6 chrX 144815357 144815593 -17784337 - L1M3a LINE L1 -4872 1083 846 668 172 20 0 chrX 144815582 144815733 -17784197 + L1MD3 LINE L1 7841 7994 -1 * 1600 235 127 52 chrX 144815729 144816345 -17783585 + L1MD2 LINE L1 5477 6138 -221 23 68 0 0 chrX 144816352 144816396 -17783534 + AT_rich Low_complexity Low_complexity 1 44 0 3071 222 34 15 chrX 144816469 144817371 -17782559 - L1MC4 LINE L1 -743 5403 4918 180 0 0 0 chrX 144817371 144817391 -17782539 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3071 222 34 15 chrX 144817391 144817889 -17782041 - L1MC4 LINE L1 -1228 4918 4431 625 181 17 0 chrX 144817893 144818009 -17781921 - FLAM_C SINE Alu -13 130 13 1036 292 44 28 chrX 144818054 144818544 -17781386 - L2 LINE L2 -206 3107 2607 400 311 255 8 chrX 144819607 144819842 -17780088 - L3 LINE CR1 -32 1545 1253 2154 116 0 0 chrX 144820509 144820819 -17779111 + AluSx SINE Alu 1 310 0 766 269 67 21 chrX 144820820 144821058 -17778872 - MIR SINE MIR -8 254 6 213 39 0 0 chrX 144821845 144821871 -17778059 + (TG)n Simple_repeat Simple_repeat 2 27 0 926 250 47 32 chrX 144822554 144822794 -17777136 - MLT1C LTR MaLR -2 465 134 2289 117 19 27 chrX 144822794 144823161 -17776769 - THE1B LTR MaLR 0 364 1 926 250 47 32 chrX 144823161 144823296 -17776634 - MLT1C LTR MaLR -333 134 3 2605 94 0 26 chrX 144823464 144823830 -17776100 - THE1C LTR MaLR -1 374 17 2304 140 22 0 chrX 144823830 144824186 -17775744 + THE1B LTR MaLR 1 364 0 2605 94 0 26 chrX 144824186 144824203 -17775727 - THE1C LTR MaLR -358 17 1 195 385 0 0 chrX 144824344 144824396 -17775534 + MIR SINE MIR 15 66 -196 423 276 99 13 chrX 144825789 144825941 -17773989 + MIR3 SINE MIR 23 187 -21 675 282 6 22 chrX 144826783 144826964 -17772966 - MIR SINE MIR -79 183 6 206 278 19 0 chrX 144826977 144827031 -17772899 - MIR SINE MIR -109 99 45 4200 42 6 2 chrX 144827725 144828246 -17771684 + L1PA4 LINE L1 5631 6153 -2 388 336 61 28 chrX 144828476 144828690 -17771240 + MIR SINE MIR 3 223 -39 264 323 60 60 chrX 144828695 144828896 -17771034 + L2 LINE L2 2849 3049 -223 376 270 65 44 chrX 144828896 144829144 -17770786 + L1MC5 LINE L1 7651 7903 -58 225 347 26 78 chrX 144829239 144829432 -17770498 + L2 LINE L2 3038 3220 -52 1711 130 20 3 chrX 144830057 144830358 -17769572 + L1MA8 LINE L1 5984 6289 -2 439 297 0 23 chrX 144830467 144830595 -17769335 - L2 LINE L2 -2 3311 3187 3579 272 83 34 chrX 144830668 144832179 -17767751 + L2 LINE L2 1552 3264 -49 393 163 20 82 chrX 144832183 144832281 -17767649 + L2 LINE L2 3222 3313 0 610 291 186 43 chrX 144833293 144833547 -17766383 - L2 LINE L2 -1078 2236 2020 2351 153 38 14 chrX 144833547 144833991 -17765939 + L1MB5 LINE L1 5720 6174 0 610 291 186 43 chrX 144833991 144834484 -17765446 - L2 LINE L2 -1294 2020 1382 2049 164 0 0 chrX 144835337 144835635 -17764295 + AluJo SINE Alu 1 298 -14 206 315 108 23 chrX 144835792 144835922 -17764008 + L3 LINE CR1 1435 1575 -2 206 286 13 26 chrX 144835988 144836065 -17763865 + (CATATA)n Simple_repeat Simple_repeat 5 80 0 303 173 31 31 chrX 144836065 144836192 -17763738 + (TATG)n Simple_repeat Simple_repeat 3 129 0 304 351 50 34 chrX 144836834 144837073 -17762857 - MIR SINE MIR -9 253 11 208 241 38 38 chrX 144837250 144837329 -17762601 - MIR SINE MIR -8 254 176 216 268 72 82 chrX 144837407 144837504 -17762426 - MIR SINE MIR -96 112 17 402 324 129 0 chrX 144837979 144838138 -17761792 + MIR3 SINE MIR 3 180 -28 492 304 82 19 chrX 144838148 144838394 -17761536 - MIR SINE MIR 0 262 4 456 316 34 53 chrX 144838995 144839352 -17760578 - L2 LINE L2 -43 3270 2921 5598 109 17 14 chrX 144839687 144840970 -17758960 + L1PA13 LINE L1 4847 6148 -15 198 0 0 0 chrX 144840987 144841009 -17758921 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 662 257 59 30 chrX 144841051 144841253 -17758677 - MIR SINE MIR -43 219 12 308 302 179 14 chrX 144841289 144841501 -17758429 - L1M4 LINE L1 -671 5513 5267 474 150 0 0 chrX 144841528 144841608 -17758322 + MER116 DNA Mariner 1 80 0 467 223 106 82 chrX 144841624 144841880 -17758050 - MIR SINE MIR 0 262 1 425 245 49 18 chrX 144841888 144842051 -17757879 - L1M4 LINE L1 -1481 4665 4498 326 308 38 13 chrX 144842121 144842280 -17757650 - L1M4 LINE L1 -1712 4434 4272 311 384 89 30 chrX 144842308 144842678 -17757252 + L2 LINE L2 2586 2977 -337 461 313 174 5 chrX 144842859 144843060 -17756870 + MIR SINE MIR 12 246 -16 182 324 92 58 chrX 144843119 144843326 -17756604 - L2 LINE L2 -2792 522 309 354 123 0 0 chrX 144843981 144844038 -17755892 + (GGGGA)n Simple_repeat Simple_repeat 4 60 0 275 374 73 0 chrX 144844081 144844204 -17755726 + MIR SINE MIR 20 151 -111 211 266 160 53 chrX 144844315 144844409 -17755521 + MIR SINE MIR 22 125 -83 1732 217 55 43 chrX 144844500 144845051 -17754879 - MLT2B1 LTR ERVL 0 515 1 198 71 0 0 chrX 144845080 144845108 -17754822 + (CAT)n Simple_repeat Simple_repeat 2 29 0 233 296 0 93 chrX 144846148 144846256 -17753674 - MIR SINE MIR -46 216 119 2081 181 58 20 chrX 144846382 144846830 -17753100 - MLT1C LTR MaLR -2 465 1 194 306 16 0 chrX 144847555 144847617 -17752313 - L2 LINE L2 -22 3250 3188 256 298 29 29 chrX 144848107 144848211 -17751719 - L2 LINE L2 -640 2674 2571 * 624 348 66 20 chrX 144848185 144848660 -17751270 + L2 LINE L2 2593 3101 -212 1168 182 52 125 chrX 144848929 144849314 -17750616 - MLT1A1 LTR MaLR -8 357 1 413 233 39 39 chrX 144849314 144849417 -17750513 - L2 LINE L2 -31 3282 3180 3412 251 102 51 chrX 144849422 144850693 -17749237 - L2 LINE L2 -655 2659 1324 226 108 27 0 chrX 144850693 144850730 -17749200 - MLT2B2 LTR ERVL 0 515 478 1461 160 8 19 chrX 145050738 145050994 -17548936 - AluJb SINE Alu -59 253 1 2276 109 0 0 chrX 145051067 145051370 -17548560 + AluSg SINE Alu 1 303 -7 217 196 339 0 chrX 145051382 145051438 -17548492 + MER5A DNA MER1_type 55 129 -60 26 0 0 0 chrX 145051584 145051610 -17548320 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chrX 145052284 145052313 -17547617 + AT_rich Low_complexity Low_complexity 1 29 0 1672 100 48 24 chrX 145052717 145052968 -17546962 + AluSq SINE Alu 1 257 -56 294 85 0 0 chrX 145053012 145053059 -17546871 + AluSq SINE Alu 262 308 0 1106 272 59 10 chrX 145053271 145053888 -17546042 - L1M4 LINE L1 -3629 2753 2098 9845 43 2 2 chrX 145054266 145056259 -17543671 - L1PA4 LINE L1 0 6155 4155 11169 57 5 2 chrX 145056359 145057908 -17542022 - L1PA4 LINE L1 -1986 4160 2607 12175 57 2 1 chrX 145057908 145059567 -17540363 + L1PA4 LINE L1 936 2597 -3549 6582 190 17 14 chrX 145059556 145061826 -17538104 + L1M1 LINE L1 2262 4538 -3027 * 1777 145 26 51 chrX 145061927 145062308 -17537622 - MSTC LTR MaLR -21 407 55 23 0 0 0 chrX 145062308 145062331 -17537599 + AT_rich Low_complexity Low_complexity 1 23 0 1777 145 26 51 chrX 145062331 145062385 -17537545 - MSTC LTR MaLR -373 55 1 280 321 0 69 chrX 145062390 145062521 -17537409 + L2 LINE L2 3188 3309 -4 30 27 0 0 chrX 145062808 145062845 -17537085 + AT_rich Low_complexity Low_complexity 1 37 0 262 313 87 0 chrX 145063020 145063135 -17536795 + MIR SINE MIR 64 188 -74 2116 101 7 11 chrX 145063154 145063440 -17536490 + AluSc SINE Alu 1 285 -24 2016 89 0 0 chrX 145063928 145064185 -17535745 - AluSx SINE Alu -17 295 39 227 306 59 12 chrX 145064733 145064818 -17535112 - L2 LINE L2 -5 3267 3179 327 353 49 27 chrX 145064909 145065133 -17534797 - MIR SINE MIR -31 231 3 1530 278 67 19 chrX 145065815 145066589 -17533341 - L1ME3 LINE L1 -7 6224 5414 438 278 67 14 chrX 145066590 145066799 -17533131 - L1ME3 LINE L1 -888 5327 5108 * 1148 259 77 25 chrX 145066797 145067377 -17532553 - L1ME3 LINE L1 -1310 4905 4286 420 20 0 0 chrX 145067377 145067426 -17532504 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 1148 259 77 25 chrX 145067426 145067497 -17532433 - L1ME3 LINE L1 -1929 4286 4220 498 283 112 35 chrX 145067509 145067883 -17532047 - L1ME3 LINE L1 -2091 4124 3722 1692 215 69 43 chrX 145067883 145068375 -17531555 - MLT1D LTR MaLR 0 505 1 1941 99 43 117 chrX 145068390 145068541 -17531389 + THE1B LTR MaLR 1 162 -202 2185 110 7 7 chrX 145068541 145068842 -17531088 - AluSx SINE Alu -11 301 1 1941 99 43 117 chrX 145068842 145069030 -17530900 + THE1B LTR MaLR 162 310 -54 1850 128 55 0 chrX 145069030 145069304 -17530626 - AluSx SINE Alu -11 301 13 1941 99 43 117 chrX 145069304 145069356 -17530574 + THE1B LTR MaLR 310 364 0 2463 69 3 0 chrX 145069356 145069691 -17530239 + THE1B-int LTR MaLR 1 336 -1244 5904 52 147 67 chrX 145069691 145070775 -17529155 - MER11A LTR ERVK 0 1266 3 8335 107 1 25 chrX 145070777 145070944 -17528986 + THE1B-int LTR MaLR 331 501 -1079 2190 125 0 6 chrX 145070944 145071256 -17528674 + AluSg SINE Alu 1 310 0 8335 107 1 25 chrX 145071256 145072365 -17527565 + THE1B-int LTR MaLR 501 1576 -4 2088 139 51 20 chrX 145072369 145072722 -17527208 + THE1B LTR MaLR 1 364 0 609 239 8 0 chrX 145072781 145072911 -17527019 - FLAM_A SINE Alu -1 132 2 424 320 58 22 chrX 145073365 145073778 -17526152 - L1ME3 LINE L1 -4653 1743 1316 202 206 0 0 chrX 145073791 145073825 -17526105 + (CATA)n Simple_repeat Simple_repeat 1 34 0 1769 128 0 0 chrX 145073826 145074075 -17525855 - AluY SINE Alu -28 283 35 2346 87 0 0 chrX 145074199 145074499 -17525431 - AluSc SINE Alu -9 300 1 586 195 40 35 chrX 145074510 145074684 -17525246 - L1MC3 LINE L1 -8 7777 7603 512 121 0 0 chrX 145074793 145074876 -17525054 - LTR19-int LTR ERV1 -680 4906 4824 * 12441 84 43 41 chrX 145074875 145077956 -17521974 - LTR19-int LTR ERV1 -967 4619 1462 1755 106 8 4 chrX 145077956 145078201 -17521729 + AluSq SINE Alu 1 246 -67 1329 118 69 8 chrX 145078201 145078446 -17521484 - LTR19A LTR ERV1 -226 260 1 233 128 26 0 chrX 145078595 145078634 -17521296 + MIR3 SINE MIR 159 198 -10 2068 124 3 0 chrX 145078671 145078961 -17520969 + AluY SINE Alu 1 291 -20 519 82 0 0 chrX 145078961 145079034 -17520896 + (TG)n Simple_repeat Simple_repeat 2 74 0 740 310 9 9 chrX 145079094 145079343 -17520587 - MIR SINE MIR 0 262 18 204 213 21 0 chrX 145079573 145079620 -17520310 - L2 LINE L2 -5 3308 3261 2073 136 3 0 chrX 145079757 145080066 -17519864 + AluSg SINE Alu 1 310 0 605 267 88 65 chrX 145080107 145080369 -17519561 - L2 LINE L2 -339 2975 2708 486 146 0 0 chrX 145080573 145080655 -17519275 + (TCCC)n Simple_repeat Simple_repeat 4 85 0 2244 96 3 16 chrX 145080891 145081203 -17518727 - AluSx SINE Alu -4 308 1 1258 204 35 15 chrX 145081913 145082256 -17517674 - L1MA8 LINE L1 -5 6286 5937 4062 128 14 2 chrX 145082273 145082911 -17517019 - L1PA15 LINE L1 -5 6160 5515 3242 219 35 34 chrX 145082912 145083774 -17516156 - L1M1 LINE L1 -6690 875 13 2812 120 29 7 chrX 145085706 145086156 -17513774 + LTR46 LTR ERV1 1 460 0 2259 99 3 3 chrX 145086991 145087285 -17512645 - AluSg1 SINE Alu -15 294 1 4784 142 62 25 chrX 145087285 145088298 -17511632 - MER4A-int LTR ERV1 -1569 5029 3979 4318 135 31 3 chrX 145088319 145089062 -17510868 - MER4A-int LTR ERV1 -1877 3138 2369 357 197 0 0 chrX 145089064 145089125 -17510805 + LTR8 LTR ERV1 157 217 -474 475 110 0 0 chrX 145089125 145089198 -17510732 - MER4A-int LTR ERV1 -3340 1675 1603 1072 116 0 7 chrX 145089302 145089448 -17510482 - AluSq/x SINE Alu -163 150 6 2448 156 31 66 chrX 145089453 145089970 -17509960 - MER4A-int LTR ERV1 -4600 2158 1668 189 74 0 0 chrX 145089970 145089997 -17509933 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2448 156 31 66 chrX 145089997 145090147 -17509783 - MER4A-int LTR ERV1 -5090 1668 1514 4604 159 70 12 chrX 145090160 145091199 -17508731 - MER4A-int LTR ERV1 -4300 2298 1200 1762 147 71 26 chrX 145091356 145091738 -17508192 + LTR10E LTR ERV1 214 612 -21 2210 127 120 65 chrX 145091744 145092817 -17507113 - MER4A-int LTR ERV1 -5416 1182 2 2705 93 5 19 chrX 145092821 145092920 -17507010 - MER4A LTR ERV1 0 664 565 4668 141 77 5 chrX 145092920 145093691 -17506239 + LTR1B LTR ERV1 1 826 0 2705 93 5 19 chrX 145093691 145094001 -17505929 - MER4A LTR ERV1 -99 565 261 468 202 0 10 chrX 145094001 145094100 -17505830 - MER4A LTR ERV1 -566 98 1 181 353 29 10 chrX 145094127 145094229 -17505701 - L2 LINE L2 -281 2991 2888 22 35 0 0 chrX 145094716 145094745 -17505185 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chrX 145095367 145095399 -17504531 + AT_rich Low_complexity Low_complexity 1 32 0 1163 221 44 79 chrX 145095516 145095974 -17503956 + L1ME2 LINE L1 5676 6117 -47 270 281 106 15 chrX 145096180 145096379 -17503551 + LTR50 LTR ERVL 1 217 -578 3187 207 131 25 chrX 145096728 145097091 -17502839 + Tigger6a DNA MER2_type 6 329 -1268 2418 99 3 0 chrX 145097091 145097403 -17502527 + AluSq SINE Alu 1 313 0 3187 207 131 25 chrX 145097403 145097788 -17502142 + Tigger6a DNA MER2_type 329 672 -925 2201 109 10 0 chrX 145097788 145098092 -17501838 + AluSg SINE Alu 1 307 -3 3187 207 131 25 chrX 145098092 145098315 -17501615 + Tigger6a DNA MER2_type 672 1081 -2 254 195 65 0 chrX 145098338 145098415 -17501515 + LTR50 LTR ERVL 711 792 -3 2317 88 0 13 chrX 145098871 145099176 -17500754 + AluSq SINE Alu 1 301 -12 381 165 10 93 chrX 145099224 145099321 -17500609 + HAL1b LINE L1 352 440 -908 776 288 83 14 chrX 145099421 145099782 -17500148 + HAL1b LINE L1 430 815 -533 388 289 123 4 chrX 145099849 145100109 -17499821 + HAL1b LINE L1 1031 1321 -27 2164 114 0 35 chrX 145100253 145100570 -17499360 + AluSx SINE Alu 1 306 -6 465 200 0 57 chrX 145101710 145101815 -17498115 - L2 LINE L2 0 3313 3215 3227 181 78 50 chrX 145101836 145102664 -17497266 + MER21B LTR ERV1 12 863 0 291 275 87 51 chrX 145102669 145102807 -17497123 - L2 LINE L2 -96 3217 3075 2346 82 0 3 chrX 145102882 145103175 -17496755 + AluSp SINE Alu 1 292 -21 320 213 0 13 chrX 145103407 145103482 -17496448 + MLT1C LTR MaLR 1 74 -393 * 835 211 11 11 chrX 145103479 145103659 -17496271 + MLT1C LTR MaLR 288 467 0 439 308 38 0 chrX 145104341 145104474 -17495456 + MIR SINE MIR 2 139 -123 204 35 0 0 chrX 145104863 145104892 -17495038 + L2 LINE L2 3285 3313 0 208 0 62 0 chrX 145105014 145105046 -17494884 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 464 271 77 0 chrX 145105448 145105618 -17494312 + L1ME LINE L1 5612 5794 -327 320 175 180 79 chrX 145105674 145105863 -17494067 + L1MC5 LINE L1 6802 7009 -952 2067 99 7 20 chrX 145105880 145106174 -17493756 - AluSp SINE Alu -22 291 2 347 89 18 0 chrX 145106470 145106526 -17493404 + (TA)n Simple_repeat Simple_repeat 1 57 0 27 29 0 0 chrX 145106561 145106595 -17493335 + AT_rich Low_complexity Low_complexity 1 34 0 2296 105 8 22 chrX 145106724 145107087 -17492843 + THE1B LTR MaLR 7 364 0 458 239 63 71 chrX 145107146 145107385 -17492545 + L1MC4a LINE L1 6563 6799 -1009 541 254 32 16 chrX 145107505 145107694 -17492236 + L1ME LINE L1 5627 5818 -352 2098 113 7 7 chrX 145108018 145108319 -17491611 + AluSg1 SINE Alu 1 301 -8 410 273 136 0 chrX 145108430 145108562 -17491368 - L2 LINE L2 -4 3309 3160 521 315 9 5 chrX 145110123 145110342 -17489588 - L1ME LINE L1 -332 6491 6272 350 332 120 33 chrX 145110356 145110383 -17489547 - L1ME LINE L1 -3434 3414 3391 2095 121 0 16 chrX 145110383 145110689 -17489241 + AluSq SINE Alu 1 301 -12 350 332 120 33 chrX 145110689 145110962 -17488968 - L1ME LINE L1 -3457 3391 3088 635 221 60 7 chrX 145111158 145111307 -17488623 - MER58B DNA MER1_type -9 332 176 410 283 10 24 chrX 145111350 145111520 -17488410 - L1MDa LINE L1 -3978 2871 2734 22 0 0 0 chrX 145111898 145111920 -17488010 + AT_rich Low_complexity Low_complexity 1 22 0 332 233 108 67 chrX 145111994 145112114 -17487816 - HAL1 LINE L1 -1155 1352 1228 5274 166 18 22 chrX 145112178 145112270 -17487660 - L1MA6 LINE L1 0 6300 6209 2313 104 0 0 chrX 145112270 145112578 -17487352 + AluSc SINE Alu 1 308 -1 5274 166 18 22 chrX 145112578 145113884 -17486046 - L1MA6 LINE L1 -91 6209 4907 2234 88 0 26 chrX 145114027 145114333 -17485597 - AluSg SINE Alu -12 298 1 2026 98 7 49 chrX 145115204 145115511 -17484419 + AluSx SINE Alu 1 294 -18 1976 105 63 69 chrX 145115816 145116123 -17483807 - THE1B LTR MaLR -1 363 57 2268 92 30 0 chrX 145116123 145116418 -17483512 + AluSx SINE Alu 1 304 -8 1976 105 63 69 chrX 145116418 145116472 -17483458 - THE1B LTR MaLR -307 57 4 21 36 0 0 chrX 145117258 145117286 -17482644 + AT_rich Low_complexity Low_complexity 1 28 0 848 264 42 3 chrX 145117356 145117667 -17482263 + MER33 DNA MER1_type 1 323 -1 364 296 32 81 chrX 145117944 145118037 -17481893 + MIR3 SINE MIR 30 111 -97 2105 83 0 61 chrX 145118037 145118350 -17481580 - AluSx SINE Alu -18 294 1 364 296 32 81 chrX 145118350 145118442 -17481488 + MIR3 SINE MIR 111 206 -2 2291 173 109 27 chrX 145118813 145119334 -17480596 + LTR6A LTR ERV1 1 564 0 2134 79 7 18 chrX 145119770 145120049 -17479881 + AluSq SINE Alu 1 276 -37 5002 222 24 19 chrX 145120427 145121572 -17478358 + L1M1 LINE L1 12 1166 -6399 1913 148 7 26 chrX 145121572 145121877 -17478053 - AluJb SINE Alu -13 299 1 5002 222 24 19 chrX 145121877 145121920 -17478010 + L1M1 LINE L1 1166 1207 -6358 6384 115 14 22 chrX 145121925 145123060 -17476870 + L1MA1 LINE L1 5178 6302 0 326 302 22 66 chrX 145124186 145124368 -17475562 - MLT1H LTR MaLR -242 307 134 2281 99 3 0 chrX 145124497 145124799 -17475131 + AluSx SINE Alu 10 312 0 312 260 92 91 chrX 145125035 145125345 -17474585 - MLT1J2 LTR MaLR 0 450 106 1520 193 7 10 chrX 145125546 145125668 -17474262 + AluJb SINE Alu 1 122 -190 375 23 0 0 chrX 145125668 145125712 -17474218 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1520 193 7 10 chrX 145125712 145125879 -17474051 + AluJb SINE Alu 122 289 -23 2348 70 13 0 chrX 145125916 145126214 -17473716 + AluSp SINE Alu 1 302 -11 34850 78 38 3 chrX 145126312 145132239 -17467691 - L1PA5 LINE L1 -9 6145 4 23 78 0 0 chrX 145132257 145132308 -17467622 + AT_rich Low_complexity Low_complexity 1 51 0 425 229 128 22 chrX 145132755 145132934 -17466996 - MLT1F LTR MaLR -8 534 337 344 86 0 35 chrX 145133171 145133229 -17466701 - MLT2B1 LTR ERVL -3 461 406 534 103 0 0 chrX 145133229 145133307 -17466623 + (GA)n Simple_repeat Simple_repeat 1 78 0 1882 185 21 3 chrX 145133313 145133703 -17466227 - MLT2B1 LTR ERVL -71 444 1 259 307 0 13 chrX 145133703 145133778 -17466152 - MLT1J2 LTR MaLR -519 74 1 444 205 18 36 chrX 145133998 145134110 -17465820 + L1M4 LINE L1 14 123 -6419 652 286 0 12 chrX 145134518 145134689 -17465241 + MIR SINE MIR 40 208 -54 2388 126 3 18 chrX 145135174 145135555 -17464375 + THE1C LTR MaLR 1 375 0 204 146 49 0 chrX 145136162 145136203 -17463727 + L2 LINE L2 3261 3303 -10 1077 163 0 0 chrX 145136479 145136675 -17463255 - L1MA5A LINE L1 -3 6294 6099 386 317 67 37 chrX 145136709 145137084 -17462846 + L1M4 LINE L1 522 907 -5918 299 194 0 56 chrX 145137139 145137211 -17462719 - MER90 LTR ERV1 -27 587 520 1759 246 44 6 chrX 145137341 145137816 -17462114 - MER90 LTR ERV1 -112 502 10 243 61 0 0 chrX 145138048 145138081 -17461849 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2049 120 7 3 chrX 145138157 145138466 -17461464 - AluSq SINE Alu -3 310 1 3111 236 57 14 chrX 145138628 145139505 -17460425 + L1MC3 LINE L1 6181 7095 -690 254 263 0 13 chrX 145139505 145139581 -17460349 + MLT1F1 LTR MaLR 33 107 -460 611 278 28 0 chrX 145139583 145139793 -17460137 + L1MD3 LINE L1 7173 7588 -395 2514 82 0 9 chrX 145139895 145140210 -17459720 + AluSq SINE Alu 1 312 -1 2190 103 0 0 chrX 145141175 145141492 -17458438 - AluSx SINE Alu 0 317 1 191 214 0 18 chrX 145141723 145141779 -17458151 + (TA)n Simple_repeat Simple_repeat 1 55 0 257 272 11 17 chrX 145141872 145142052 -17457878 + GA-rich Low_complexity Low_complexity 2 180 0 2152 118 105 35 chrX 145143939 145144339 -17455591 - MSTA LTR MaLR 0 428 1 1502 197 27 53 chrX 145144498 145144786 -17455144 - MLT1A1 LTR MaLR 0 365 88 2019 133 3 3 chrX 145144786 145145080 -17454850 - AluSg SINE Alu -16 294 1 1502 197 27 53 chrX 145145080 145145166 -17454764 - MLT1A1 LTR MaLR -277 88 1 302 216 40 0 chrX 145145389 145145463 -17454467 - MIR SINE MIR -72 190 114 749 233 13 52 chrX 145145498 145145730 -17454200 - MER58A DNA MER1_type 0 224 2 480 183 0 0 chrX 145146077 145146159 -17453771 + Tigger3(Golem) DNA MER2_type 1 82 -2947 624 228 0 0 chrX 145146164 145146287 -17453643 + Tigger3(Golem) DNA MER2_type 2905 3027 -2 22 35 0 0 chrX 145146312 145146341 -17453589 + AT_rich Low_complexity Low_complexity 1 29 0 244 167 17 17 chrX 145148466 145148526 -17451404 + T-rich Low_complexity Low_complexity 5 64 0 2095 107 24 0 chrX 145148817 145149108 -17450822 - AluY SINE Alu -13 298 1 510 229 62 95 chrX 145149698 145149810 -17450120 - MER5B DNA MER1_type -5 173 68 2431 83 0 3 chrX 145149810 145150112 -17449818 - AluSq SINE Alu -12 301 1 510 229 62 95 chrX 145150112 145150178 -17449752 - MER5B DNA MER1_type -110 68 1 876 192 39 6 chrX 145150186 145150368 -17449562 + MER5A DNA MER1_type 1 188 -1 366 287 205 0 chrX 145150377 145150499 -17449431 - MER5A DNA MER1_type 0 189 43 2169 160 2 96 chrX 145150523 145150751 -17449179 - MSTC LTR MaLR 0 428 180 261 83 0 0 chrX 145150751 145150787 -17449143 + (CCCG)n Simple_repeat Simple_repeat 2 37 0 1579 131 28 97 chrX 145150787 145151107 -17448823 - AluYb8 SINE Alu -20 298 1 2169 160 2 96 chrX 145151107 145151347 -17448583 - MSTC LTR MaLR -246 182 3 214 339 42 74 chrX 145151366 145151482 -17448448 - MER5A DNA MER1_type -6 183 74 2336 95 3 0 chrX 145151482 145151777 -17448153 + AluSp SINE Alu 1 296 -17 214 339 42 74 chrX 145151777 145151849 -17448081 - MER5A DNA MER1_type -115 74 1 362 266 8 55 chrX 145151873 145152001 -17447929 + MIR SINE MIR 87 208 -54 2712 117 50 0 chrX 145152395 145152838 -17447092 + MER39B LTR ERV1 1 465 -188 1107 151 10 10 chrX 145153516 145153708 -17446222 + MER39B LTR ERV1 462 653 0 2356 49 7 7 chrX 145153832 145154118 -17445812 + AluY SINE Alu 1 286 -25 190 318 16 0 chrX 145155664 145155727 -17444203 + L2 LINE L2 3207 3270 -2 26 30 0 0 chrX 145156079 145156112 -17443818 + AT_rich Low_complexity Low_complexity 1 33 0 259 346 0 19 chrX 145157188 145157292 -17442638 - MIR SINE MIR -77 131 30 543 275 70 6 chrX 145158933 145159104 -17440826 - MIR SINE MIR -12 250 69 200 393 11 0 chrX 145159129 145159218 -17440712 + L2 LINE L2 2794 2883 -431 1557 149 76 21 chrX 145159460 145159789 -17440141 - MLT2C2 LTR ERVL -117 347 1 398 300 36 43 chrX 145159803 145159943 -17439987 + L2 LINE L2 3174 3312 -1 327 224 13 0 chrX 145160157 145160233 -17439697 + L1ME3A LINE L1 5689 5765 -356 1124 291 86 27 chrX 145160456 145160900 -17439030 - L2 LINE L2 -23 3290 2821 351 294 123 37 chrX 145161365 145161552 -17438378 + L1ME3A LINE L1 5962 6164 -6 2116 113 3 0 chrX 145161571 145161879 -17438051 + AluSq SINE Alu 1 309 0 2828 144 38 18 chrX 145162139 145162686 -17437244 - LTR49 LTR ERV1 -37 558 1 1785 295 329 21 chrX 145163469 145165578 -17434352 + L2 LINE L2 308 3054 -259 741 126 0 0 chrX 145165685 145165796 -17434134 - AluSg SINE Alu -199 111 1 2327 87 3 3 chrX 145166657 145166955 -17432975 + AluSp SINE Alu 1 298 -15 232 341 34 0 chrX 145167559 145167646 -17432284 + L2 LINE L2 228 317 -2997 522 279 146 0 chrX 145167646 145167804 -17432126 - MER5A DNA MER1_type 0 189 9 398 276 4 62 chrX 145167859 145168080 -17431850 + L2 LINE L2 359 639 -2675 2891 194 15 8 chrX 145168254 145168848 -17431082 + MER90 LTR ERV1 2 599 -15 271 193 35 0 chrX 145168889 145168946 -17430984 + MLT1J1 LTR MaLR 98 156 -290 2199 99 20 3 chrX 145168958 145169251 -17430679 - AluSx SINE Alu -14 298 1 357 331 98 31 chrX 145169255 145169542 -17430388 + L2 LINE L2 3008 3313 0 230 293 12 12 chrX 145169619 145169701 -17430229 + (TA)n Simple_repeat Simple_repeat 1 82 0 271 259 7 144 chrX 145169953 145170092 -17429838 + MIR3 SINE MIR 77 196 -12 1964 105 56 25 chrX 145170191 145170476 -17429454 + AluSg SINE Alu 1 294 -16 310 409 21 35 chrX 145172086 145172372 -17427558 - L2 LINE L2 -4 3268 2987 1466 230 3 13 chrX 145174080 145174462 -17425468 - L1 LINE L1 -3179 2967 2590 362 295 79 80 chrX 145174958 145175354 -17424576 + MLT1L LTR MaLR 100 600 -15 2315 84 30 0 chrX 145176948 145177244 -17422686 - AluSp SINE Alu -8 305 1 333 0 0 0 chrX 145177593 145177611 -17422319 + (TG)n Simple_repeat Simple_repeat 1 55 0 333 0 0 0 chrX 145177611 145177648 -17422282 + (TG)n Simple_repeat Simple_repeat 2 38 0 2254 91 7 3 chrX 145177776 145178073 -17421857 - AluSg SINE Alu -12 298 1 25 0 0 0 chrX 145178094 145178119 -17421811 + AT_rich Low_complexity Low_complexity 1 25 0 334 274 9 35 chrX 145178119 145178232 -17421698 - L2 LINE L2 0 3313 3204 384 253 20 0 chrX 145178281 145178380 -17421550 - MER94 DNA DNA -33 101 1 1096 272 69 64 chrX 145178386 145179071 -17420859 - L2 LINE L2 -161 3152 2471 393 318 61 15 chrX 145179076 145179208 -17420722 - MIR3 SINE MIR -54 154 17 211 179 0 36 chrX 145179394 145179450 -17420480 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 668 264 207 54 chrX 145179641 145179803 -17420127 + L2 LINE L2 2905 3041 -272 1720 143 59 51 chrX 145179803 145180175 -17419755 - THE1C LTR MaLR 0 375 1 668 264 207 54 chrX 145180175 145180365 -17419565 + L2 LINE L2 3041 3311 -2 657 274 147 40 chrX 145180436 145180790 -17419140 + L2 LINE L2 2921 3312 -1 1129 184 10 0 chrX 145181957 145182163 -17417767 + MER58A DNA MER1_type 17 224 0 199 200 0 138 chrX 145182412 145182477 -17417453 + MIR3 SINE MIR 9 64 -144 268 297 55 11 chrX 145183808 145183899 -17416031 + MER91C DNA MER1_type 34 128 -12 462 138 30 48 chrX 145183899 145184045 -17415885 + MLT1D LTR MaLR 1 80 -425 1423 205 36 30 chrX 145184045 145184433 -17415497 + MLT2D LTR ERVL 1 534 -20 836 78 39 7 chrX 145184435 145184588 -17415342 + (TA)n Simple_repeat Simple_repeat 1 158 0 336 147 0 0 chrX 145184618 145184693 -17415237 + (TA)n Simple_repeat Simple_repeat 2 76 0 1436 206 47 22 chrX 145184729 145185089 -17414841 + MLT1D LTR MaLR 133 501 -4 1098 246 47 22 chrX 145185178 145185499 -17414431 + MER46C DNA MER2_type 9 337 -1 249 208 19 0 chrX 145185503 145185556 -17414374 + MIR SINE MIR 85 138 -124 207 217 65 0 chrX 145185685 145185731 -17414199 - L2 LINE L2 -7 3306 3258 1387 125 8 35 chrX 145185899 145186155 -17413775 + L1MA5 LINE L1 6052 6300 0 249 266 275 34 chrX 145186401 145186608 -17413322 - MIR SINE MIR -5 257 1 184 291 0 18 chrX 145188502 145188557 -17411373 + L2 LINE L2 3205 3258 -14 1448 176 0 47 chrX 145188615 145188807 -17411123 + AluJo SINE Alu 39 216 -96 3811 133 35 14 chrX 145188807 145189438 -17410492 - LTR9B LTR ERV1 0 644 1 1448 176 0 47 chrX 145189438 145189524 -17410406 + AluJo SINE Alu 216 304 -8 256 287 40 0 chrX 145189678 145189779 -17410151 + L1MC4a LINE L1 5414 5518 -2290 335 267 94 47 chrX 145189953 145190144 -17409786 + L1MC4a LINE L1 5730 5929 -1879 513 84 0 0 chrX 145190173 145190244 -17409686 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 0 0 0 chrX 145190658 145190683 -17409247 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 145191500 145191522 -17408408 + AT_rich Low_complexity Low_complexity 1 22 0 188 270 22 67 chrX 145191595 145191684 -17408246 - L2 LINE L2 0 3313 3229 366 250 133 17 chrX 145191826 145191946 -17407984 - L2 LINE L2 0 3313 3180 186 71 0 0 chrX 145192375 145192403 -17407527 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 842 236 109 53 chrX 145193157 145193455 -17406475 + MLT1D LTR MaLR 31 352 -153 1503 159 133 42 chrX 145193455 145193764 -17406166 - MER1B DNA MER1_type 0 337 1 842 236 109 53 chrX 145193764 145193804 -17406126 + MLT1D LTR MaLR 352 388 -117 321 26 0 0 chrX 145194354 145194392 -17405538 + (TG)n Simple_repeat Simple_repeat 2 39 0 1816 126 59 51 chrX 145195038 145195387 -17404543 - THE1C LTR MaLR 0 375 21 2475 111 31 0 chrX 145195387 145195740 -17404190 + THE1B LTR MaLR 1 364 0 1816 126 59 51 chrX 145195740 145195762 -17404168 - THE1C LTR MaLR -354 21 1 244 147 320 27 chrX 145195807 145195882 -17404048 - MER5B DNA MER1_type -18 160 64 6819 81 27 11 chrX 145195882 145196881 -17403049 + MER41B-int LTR ERV1 4930 5944 -2 3927 75 6 0 chrX 145196881 145197425 -17402505 + MER41B LTR ERV1 1 547 -88 2381 46 3 3 chrX 145197456 145197778 -17402152 - AluY SINE Alu 0 322 1 1758 167 13 19 chrX 145197900 145198272 -17401658 + L1 LINE L1 4699 5068 -1078 640 262 105 6 chrX 145198423 145198595 -17401335 - MIR SINE MIR -32 230 42 21 36 0 0 chrX 145199070 145199098 -17400832 + AT_rich Low_complexity Low_complexity 1 28 0 2382 83 3 0 chrX 145199155 145199455 -17400475 - AluSg SINE Alu -9 301 1 512 320 33 13 chrX 145199540 145199693 -17400237 + L2 LINE L2 3115 3270 -2 563 298 6 24 chrX 145199838 145200006 -17399924 + MIR SINE MIR 2 166 -96 300 230 45 34 chrX 145200035 145200213 -17399717 + L1MC4a LINE L1 5841 6020 -1788 377 253 126 11 chrX 145200398 145200572 -17399358 - MER117 DNA MER1_type 0 197 4 186 268 109 36 chrX 145200580 145200718 -17399212 + L3b LINE CR1 1139 1286 -297 222 315 76 0 chrX 145201015 145201107 -17398823 - MIR SINE MIR -94 114 16 1241 183 81 58 chrX 145201216 145201636 -17398294 - MER66B LTR ERV1 0 486 97 197 309 29 0 chrX 145201796 145201864 -17398066 - MIR SINE MIR -14 248 179 * 1349 266 64 32 chrX 145201860 145202629 -17397301 + L2 LINE L2 2427 3303 -10 390 313 45 0 chrX 145202618 145202752 -17397178 - MIR SINE MIR -63 199 60 * 180 0 0 0 chrX 145202782 145202802 -17397128 + (TC)n Simple_repeat Simple_repeat 1 20 0 6141 206 35 40 chrX 145203152 145204701 -17395229 + MER45R DNA AcHobo 40 1581 0 1817 115 8 0 chrX 145204862 145205115 -17394815 - AluSx SINE Alu -57 255 1 270 286 41 10 chrX 145205116 145205214 -17394716 + HERV16 LTR ERVL 2352 2452 -2544 183 283 43 65 chrX 145205235 145205327 -17394603 - MIR SINE MIR -85 177 88 311 310 88 12 chrX 145205352 145205523 -17394407 + MER5A DNA MER1_type 1 184 -5 2282 335 21 12 chrX 145205652 145206821 -17393109 - HERV16 LTR ERVL -2516 2480 1347 1300 293 62 24 chrX 145206809 145207000 -17392930 - HERV16 LTR ERVL -3776 1220 1038 * 1662 183 70 14 chrX 145207000 145207344 -17392586 + MLT1A1 LTR MaLR 1 363 -2 1300 293 62 24 chrX 145207344 145207833 -17392097 - HERV16 LTR ERVL -3958 1038 469 270 270 14 0 chrX 145207846 145207920 -17392010 + MER20 DNA MER1_type 4 78 -141 2067 171 26 12 chrX 145207920 145208335 -17391595 - MER61C LTR ERV1 0 434 14 425 269 78 0 chrX 145208340 145208481 -17391449 + MER20 DNA MER1_type 65 216 -3 2420 69 0 7 chrX 145208594 145208900 -17391030 + AluSg SINE Alu 1 304 -6 573 306 40 27 chrX 145209058 145209355 -17390575 + LTR16A LTR ERVL 144 444 -6 1584 192 40 26 chrX 145209507 145209856 -17390074 - MLT1A1 LTR MaLR -11 354 1 288 364 25 16 chrX 145210372 145210493 -17389437 - MIR3 SINE MIR -43 165 44 2235 116 7 0 chrX 145210661 145210971 -17388959 - AluSp SINE Alu -1 312 1 1462 197 107 0 chrX 145212051 145212361 -17387569 - MER2 DNA MER2_type -1 343 1 1045 197 65 11 chrX 145212583 145212862 -17387068 - L1 LINE L1 -1022 5124 4831 6818 204 8 2 chrX 145212864 145215134 -17384796 - L1PA15 LINE L1 -5 6811 4530 2284 44 24 0 chrX 145215234 145215532 -17384398 + MER41A LTR ERV1 250 554 0 3834 118 12 35 chrX 145215617 145216281 -17383649 + MER41A-int LTR ERV1 1 649 -5297 3012 122 25 36 chrX 145216268 145216530 -17383400 + MER41A-int LTR ERV1 1082 1345 -6471 * 261 0 0 0 chrX 145216530 145216559 -17383371 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3012 122 25 36 chrX 145216559 145216629 -17383301 + MER41A-int LTR ERV1 1345 1414 -6402 2176 65 0 0 chrX 145216629 145216892 -17383038 - AluY SINE Alu -3 308 46 3012 122 25 36 chrX 145216892 145217455 -17382475 + MER41A-int LTR ERV1 1414 4057 -3759 1990 110 0 0 chrX 145217453 145217744 -17382186 + PABL_A-int LTR ERV1 2565 2855 -2160 * 2589 245 21 28 chrX 145217845 145218515 -17381415 - L1PA15 LINE L1 -6118 669 5 548 137 0 20 chrX 145218529 145218631 -17381299 - L1 LINE L1 -1304 4842 4743 263 188 0 0 chrX 145218628 145218676 -17381254 + L1P LINE L1 4699 4746 -1400 * 435 260 58 34 chrX 145219251 145219459 -17380471 - LTR33 LTR ERVL -2 519 307 780 291 107 27 chrX 145219752 145220127 -17379803 + MLT1I LTR MaLR 5 409 0 348 270 75 78 chrX 145220127 145220446 -17379484 - L1ME3A LINE L1 -223 5947 5630 3250 247 27 21 chrX 145220588 145221512 -17378418 - L1P3 LINE L1 -4937 938 9 11109 127 43 7 chrX 145221519 145223336 -17376594 - L1M1 LINE L1 -4578 2987 1104 645 125 45 0 chrX 145223335 145223447 -17376483 - L1M1 LINE L1 -7430 135 19 * 4064 98 2 18 chrX 145223856 145224390 -17375540 + MER41A-int LTR ERV1 5350 5874 -72 2346 80 3 0 chrX 145224390 145224689 -17375241 - AluY SINE Alu -11 300 1 4064 98 2 18 chrX 145224689 145224757 -17375173 + MER41A-int LTR ERV1 5874 5942 -4 4355 63 0 4 chrX 145224757 145225309 -17374621 + MER41A LTR ERV1 1 550 -4 1823 258 28 27 chrX 145225316 145225987 -17373943 + L1ME LINE L1 4465 5136 -1010 2224 127 74 55 chrX 145225992 145226479 -17373451 - MER84 LTR ERVI -11 496 1 765 233 41 27 chrX 145226480 145226610 -17373320 + L1ME LINE L1 5139 5266 -900 9497 96 3 1 chrX 145226610 145227893 -17372037 - HSMAR1 DNA Mariner 0 1287 2 765 233 41 27 chrX 145227893 145228121 -17371809 + L1ME LINE L1 5266 5502 -664 678 285 38 55 chrX 145228151 145228531 -17371399 + L2 LINE L2 2569 2940 -332 258 291 82 27 chrX 145228559 145228669 -17371261 + L2 LINE L2 2897 3012 -260 5175 250 48 19 chrX 145228908 145229024 -17370906 - L1ME3A LINE L1 -743 5403 5292 2082 144 71 52 chrX 145229024 145229448 -17370482 - MSTB1 LTR MaLR 0 432 1 5175 250 48 19 chrX 145229448 145230654 -17369276 - L1ME3A LINE L1 -854 5292 4049 2600 42 0 13 chrX 145230654 145230966 -17368964 - AluY SINE Alu -3 308 1 5175 250 48 19 chrX 145230966 145231665 -17368265 - L1ME3A LINE L1 -2097 4049 3371 1386 244 79 7 chrX 145231668 145232074 -17367856 + MLT1C LTR MaLR 1 435 -32 456 271 60 67 chrX 145232075 145232344 -17367586 - L1MC5 LINE L1 -108 7853 7587 5900 109 52 6 chrX 145232349 145233291 -17366639 - L1PA14 LINE L1 0 6161 5218 754 172 26 7 chrX 145233284 145233435 -17366495 - L1 LINE L1 -1221 4925 4772 1827 167 0 0 chrX 145233437 145233785 -17366145 + L1 LINE L1 4477 4824 -1322 2368 219 22 0 chrX 145233785 145234054 -17365876 - L1 LINE L1 -1465 4681 4419 189 0 0 0 chrX 145234054 145234075 -17365855 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2368 219 22 0 chrX 145234075 145234390 -17365540 - L1 LINE L1 -1727 4419 4084 2287 245 91 29 chrX 145234384 145235253 -17364677 - L1PBa LINE L1 -5935 928 6 * 457 304 144 3 chrX 145235272 145235571 -17364359 - LTR33A LTR ERVL -54 469 129 413 280 49 107 chrX 145235817 145236042 -17363888 + L2 LINE L2 3057 3268 -4 30 77 0 0 chrX 145238215 145238280 -17361650 + AT_rich Low_complexity Low_complexity 1 65 0 3805 183 34 45 chrX 145238311 145239168 -17360762 - MER21B LTR ERV1 -1 862 16 861 133 123 66 chrX 145239168 145239379 -17360551 + MER46A DNA MER2_type 1 223 -13 343 248 72 56 chrX 145239594 145239719 -17360211 - MIR SINE MIR -44 218 92 196 169 0 46 chrX 145241645 145241710 -17358220 + GA-rich Low_complexity Low_complexity 2 63 0 188 300 40 50 chrX 145241754 145241854 -17358076 + MIR SINE MIR 42 140 -122 * 347 341 22 22 chrX 145241853 145241988 -17357942 - L2 LINE L2 0 3272 3138 335 266 18 75 chrX 145242304 145242530 -17357400 + L2 LINE L2 2850 3062 -251 189 107 0 0 chrX 145242592 145242620 -17357310 + (T)n Simple_repeat Simple_repeat 1 28 0 394 157 0 0 chrX 145242620 145242689 -17357241 - L1ME LINE L1 -5602 468 400 285 279 27 78 chrX 145242691 145242910 -17357020 - L1ME LINE L1 -5748 322 115 1021 280 93 44 chrX 145242970 145243569 -17356361 + L2 LINE L2 2681 3311 -2 2158 129 0 0 chrX 145243775 145244086 -17355844 + AluY SINE Alu 1 311 0 32 0 0 0 chrX 145244674 145244706 -17355224 + AT_rich Low_complexity Low_complexity 1 32 0 346 324 34 0 chrX 145245112 145245260 -17354670 + MER117 DNA MER1_type 10 162 -35 341 299 132 15 chrX 145245931 145246128 -17353802 + ERVL LTR ERVL 3532 3751 -2013 189 94 0 0 chrX 145246362 145246394 -17353536 + (A)n Simple_repeat Simple_repeat 1 32 0 237 346 12 0 chrX 145247756 145247837 -17352093 + L2 LINE L2 2279 2360 -954 23 33 0 0 chrX 145247875 145247905 -17352025 + AT_rich Low_complexity Low_complexity 1 30 0 767 332 29 64 chrX 145247908 145248360 -17351570 + L2 LINE L2 2383 2818 -496 769 203 21 43 chrX 145248460 145248647 -17351283 + AluJo SINE Alu 127 309 -3 957 118 0 14 chrX 145248756 145248900 -17351030 + AluSg/x SINE Alu 167 308 -4 695 248 49 0 chrX 145248908 145249154 -17350776 + HAL1 LINE L1 1107 1364 -1143 1134 250 69 70 chrX 145249253 145249791 -17350139 + HAL1 LINE L1 1674 2211 -296 1731 182 96 6 chrX 145249791 145250154 -17349776 + MSTD LTR MaLR 1 396 0 1134 250 69 70 chrX 145250154 145250241 -17349689 + HAL1 LINE L1 2211 2297 -210 1319 192 120 11 chrX 145250241 145250507 -17349423 + AluJo SINE Alu 1 295 -17 1134 250 69 70 chrX 145250507 145250605 -17349325 + HAL1 LINE L1 2297 2397 -110 3017 204 14 5 chrX 145250860 145251026 -17348904 - MLT1A1-int LTR MaLR -1103 632 469 2118 151 0 0 chrX 145251026 145251324 -17348606 + AluSx SINE Alu 1 298 -14 3017 204 14 5 chrX 145251324 145251779 -17348151 - MLT1A1-int LTR MaLR -1266 469 5 1897 156 19 52 chrX 145251783 145252149 -17347781 - MLT1A1 LTR MaLR 0 365 12 234 338 60 33 chrX 145252486 145252637 -17347293 - MER5A DNA MER1_type -1 188 34 * 448 351 0 7 chrX 145252503 145252654 -17347276 + MER5A DNA MER1_type 35 184 -5 2521 141 44 2 chrX 145252854 145253265 -17346665 - MSTA LTR MaLR 0 428 1 2390 100 0 3 chrX 145255288 145255599 -17344331 + AluSg SINE Alu 1 310 0 1309 255 21 29 chrX 145255622 145256006 -17343924 + LTR16A LTR ERVL 65 445 -5 5575 31 0 0 chrX 145256081 145256734 -17343196 + L1PA4 LINE L1 5500 6152 -3 25 0 0 0 chrX 145258615 145258640 -17341290 + AT_rich Low_complexity Low_complexity 1 25 0 32 26 0 0 chrX 145258934 145258973 -17340957 + AT_rich Low_complexity Low_complexity 1 39 0 635 289 89 50 chrX 145260880 145261260 -17338670 + MLT1L LTR MaLR 219 613 -2 730 282 55 60 chrX 145261297 145261554 -17338376 - L2 LINE L2 -125 3188 2934 2490 82 0 0 chrX 145261554 145261857 -17338073 + AluSc SINE Alu 1 303 -6 730 282 55 60 chrX 145261857 145262093 -17337837 - L2 LINE L2 -379 2934 2698 4364 142 26 59 chrX 145262126 145263097 -17336833 - Ricksha DNA DNA -24 3227 2289 597 212 12 18 chrX 145263099 145263269 -17336661 + CT-rich Low_complexity Low_complexity 4 172 0 2109 97 0 4 chrX 145263269 145263547 -17336383 - AluY SINE Alu -34 277 1 3754 128 8 21 chrX 145263547 145263896 -17336034 - Ricksha DNA DNA -947 2299 1960 1818 168 3 3 chrX 145263896 145264181 -17335749 + AluJo SINE Alu 7 291 -21 3754 128 8 21 chrX 145264181 145264449 -17335481 - Ricksha DNA DNA -1286 1960 1690 1861 101 0 0 chrX 145264466 145264703 -17335227 + AluSc SINE Alu 6 242 -67 740 189 13 0 chrX 145264728 145264881 -17335049 - Ricksha_a DNA DNA -1025 156 2 2734 157 11 17 chrX 145264883 145265361 -17334569 + MLT2B2 LTR ERVL 41 515 0 2240 104 0 3 chrX 145266362 145266660 -17333270 - AluSg SINE Alu -13 297 1 414 0 0 0 chrX 145267076 145267122 -17332808 + (TA)n Simple_repeat Simple_repeat 2 47 0 2494 59 0 16 chrX 145267122 145267428 -17332502 - AluY SINE Alu -10 301 1 1219 188 12 31 chrX 145267470 145267725 -17332205 + MIR SINE MIR 3 252 -10 354 250 188 28 chrX 145267904 145268048 -17331882 - MIR3 SINE MIR -39 169 3 349 250 0 58 chrX 145269177 145269281 -17330649 - MIR3 SINE MIR -5 203 106 2168 94 4 0 chrX 145269954 145270231 -17329699 + AluSp SINE Alu 1 278 -35 384 22 0 0 chrX 145270232 145270277 -17329653 + (TC)n Simple_repeat Simple_repeat 2 46 0 396 0 0 0 chrX 145270284 145270328 -17329602 + (TA)n Simple_repeat Simple_repeat 1 44 0 757 254 60 5 chrX 145270450 145270667 -17329263 + REP3 LTR ERV 251 479 -83 714 251 84 15 chrX 145270784 145271089 -17328841 + MSTD LTR MaLR 2 357 -38 4433 131 50 11 chrX 145271089 145271877 -17328053 + L1PA14 LINE L1 5344 6161 0 324 100 0 0 chrX 145271889 145271939 -17327991 + MSTD LTR MaLR 406 455 -2 864 176 0 0 chrX 145272681 145272834 -17327096 + L1PA15 LINE L1 1 153 -6634 537 267 15 108 chrX 145272960 145273293 -17326637 + L1PA15 LINE L1 1188 1489 -5298 4588 182 11 10 chrX 145273294 145274834 -17325096 + L1PA15 LINE L1 2942 6693 -123 2765 199 41 8 chrX 145274844 145275458 -17324472 + LTR9B LTR ERV1 7 640 -4 273 169 135 56 chrX 145275460 145275549 -17324381 + HUERS-P3b LTR ERV1 1 96 -7322 593 204 26 40 chrX 145275560 145275712 -17324218 + HUERS-P3b LTR ERV1 440 589 -8330 * 5431 149 9 3 chrX 145275698 145276575 -17323355 + HUERS-P3 LTR ERV1 2403 3284 -5635 754 241 0 0 chrX 145276568 145276713 -17323217 + HUERS-P3 LTR ERV1 4539 4683 -4236 * 3875 127 75 2 chrX 145276713 145277336 -17322594 + HUERS-P3 LTR ERV1 4901 5569 -3350 3795 176 9 11 chrX 145277328 145278081 -17321849 + HUERS-P3 LTR ERV1 6162 6933 -485 * 812 172 12 11 chrX 145278099 145278292 -17321638 + HUERS-P3 LTR ERV1 2385 4320 -560 414 263 17 8 chrX 145278582 145278700 -17321230 + HUERS-P3 LTR ERV1 6828 6946 -145 * 558 158 11 11 chrX 145278681 145278776 -17321154 + HUERS-P3 LTR ERV1 8822 8916 -3 2929 176 65 13 chrX 145278784 145279385 -17320545 + LTR9B LTR ERV1 7 638 -6 634 167 0 0 chrX 145279389 145279503 -17320427 + L1PA15 LINE L1 6042 6155 -10 2690 33 0 0 chrX 145279571 145279877 -17320053 + AluY SINE Alu 1 306 -5 13846 200 29 16 chrX 145279878 145286759 -17313171 + L1PB2 LINE L1 6 6067 -800 2187 137 116 13 chrX 145286759 145287147 -17312783 + MSTA LTR MaLR 1 428 0 13846 200 29 16 chrX 145287147 145287958 -17311972 + L1PB2 LINE L1 6067 6866 -1 333 179 126 0 chrX 145287934 145288029 -17311901 - L1ME4a LINE L1 -55 6066 5960 * 1947 162 0 9 chrX 145288196 145288511 -17311419 + AluSx SINE Alu 1 312 0 24 0 0 0 chrX 145288599 145288623 -17311307 + AT_rich Low_complexity Low_complexity 1 24 0 2515 110 11 8 chrX 145289177 145289551 -17310379 + THE1C LTR MaLR 1 375 0 10508 111 7 62 chrX 145289551 145291224 -17308706 + THE1C-int LTR MaLR 1 1580 0 2460 118 11 11 chrX 145291224 145291597 -17308333 + THE1C LTR MaLR 1 373 -2 344 219 67 38 chrX 145291643 145291748 -17308182 - MLT1H LTR MaLR -439 110 3 383 315 9 0 chrX 145291759 145291867 -17308063 + L2 LINE L2 2832 2940 -373 1240 254 215 7 chrX 145291902 145292307 -17307623 - MLT1H LTR MaLR -60 489 1 228 245 0 0 chrX 145292382 145292435 -17307495 + MLT1H LTR MaLR 496 548 -1 1946 156 20 55 chrX 145292738 145293142 -17306788 - MLT1B LTR MaLR 0 390 1 3708 43 0 11 chrX 145293747 145294227 -17305703 + L1PA6 LINE L1 5695 6154 0 2286 87 6 19 chrX 145294455 145294766 -17305164 + AluY SINE Alu 1 307 -4 1669 133 14 11 chrX 145294853 145295139 -17304791 + L1MA5 LINE L1 6014 6300 0 232 371 72 0 chrX 145296345 145296442 -17303488 + MLT1-int LTR MaLR 756 859 -512 1835 250 81 17 chrX 145296897 145297413 -17302517 + MLT1H LTR MaLR 1 549 0 2123 166 17 6 chrX 145297658 145298019 -17301911 + MLT1A1 LTR MaLR 1 365 0 267 302 95 8 chrX 145298936 145299062 -17300868 + L1MC4 LINE L1 6866 7002 -1040 2091 134 57 17 chrX 145299676 145300026 -17299904 + THE1B LTR MaLR 1 364 0 11211 113 2 1 chrX 145300026 145301602 -17298328 + THE1B-int LTR MaLR 1 1578 -2 2067 137 45 25 chrX 145301604 145301961 -17297969 + THE1B LTR MaLR 1 364 0 493 94 0 59 chrX 145302736 145302821 -17297109 + MADE1 DNA Mariner 1 80 0 692 259 105 50 chrX 145304025 145304372 -17295558 + L1ME4a LINE L1 2571 2968 -3178 207 0 0 0 chrX 145304372 145304395 -17295535 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 692 259 105 50 chrX 145304395 145304639 -17295291 + L1ME4a LINE L1 2968 3197 -2949 1147 275 103 58 chrX 145305272 145306452 -17293478 + L1ME4a LINE L1 3786 5092 -1029 625 217 0 0 chrX 145306452 145306572 -17293358 + FLAM_A SINE Alu 2 121 -12 1147 275 103 58 chrX 145306572 145307330 -17292600 + L1ME4a LINE L1 5092 5814 -307 31 68 0 0 chrX 145307391 145307450 -17292480 + AT_rich Low_complexity Low_complexity 1 59 0 283 196 65 72 chrX 145307526 145307679 -17292251 + L1ME4a LINE L1 5966 6117 -4 207 162 0 0 chrX 145307696 145307733 -17292197 + (CA)n Simple_repeat Simple_repeat 2 38 0 302 219 0 94 chrX 145307741 145307837 -17292093 + L1MC4 LINE L1 6615 6701 -1341 183 156 0 0 chrX 145307840 145307872 -17292058 + (TA)n Simple_repeat Simple_repeat 2 33 0 285 230 110 20 chrX 145308076 145308176 -17291754 - L1ME4a LINE L1 -6 6115 6007 32 43 0 0 chrX 145308295 145308341 -17291589 + AT_rich Low_complexity Low_complexity 1 46 0 419 256 82 10 chrX 145308544 145308739 -17291191 - L1ME4a LINE L1 -219 5951 5743 459 301 41 5 chrX 145308829 145309025 -17290905 - L1ME4a LINE L1 -224 5897 5695 246 277 12 0 chrX 145309161 145309244 -17290686 + L1ME4a LINE L1 5696 5779 -342 234 251 198 27 chrX 145309272 145309459 -17290471 + L1ME4a LINE L1 5839 6057 -64 721 246 188 13 chrX 145309550 145310014 -17289916 - L1ME4a LINE L1 -2 6119 5575 199 254 51 34 chrX 145310184 145310243 -17289687 + L2 LINE L2 3004 3063 -209 350 113 19 0 chrX 145310336 145310389 -17289541 + L2 LINE L2 3258 3311 -2 1077 190 22 63 chrX 145311154 145311412 -17288518 + MIR SINE MIR 1 249 -13 311 65 22 0 chrX 145311412 145311458 -17288472 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1033 201 47 0 chrX 145314695 145314909 -17285021 - MER58A DNA MER1_type 0 224 1 878 199 87 48 chrX 145316426 145316657 -17283273 - MIR SINE MIR 0 262 23 2369 100 0 0 chrX 145317997 145318306 -17281624 - AluSc SINE Alu 0 309 1 373 310 124 7 chrX 145318808 145318953 -17280977 - MIR3 SINE MIR -17 191 30 312 310 89 32 chrX 145319010 145319168 -17280762 - MER5B DNA MER1_type -11 167 1 5421 66 4 1 chrX 145319331 145320027 -17279903 - L1PA8 LINE L1 -21 6151 5454 1553 61 35 0 chrX 145320407 145320686 -17279244 - L1PA8 LINE L1 -730 5442 5157 307 305 70 19 chrX 145323140 145323353 -17276577 - Tigger2 DNA MER2_type -1400 1318 1095 269 0 0 53 chrX 145323399 145323437 -17276493 + (TTCTC)n Simple_repeat Simple_repeat 1 36 0 1863 136 4 0 chrX 145323437 145323701 -17276229 - AluSq SINE Alu -3 310 50 2265 99 0 7 chrX 145324651 145324945 -17274985 + AluSg SINE Alu 1 292 -18 198 167 0 0 chrX 145324945 145324981 -17274949 + (TA)n Simple_repeat Simple_repeat 1 36 0 312 27 0 0 chrX 145324981 145325018 -17274912 + (TG)n Simple_repeat Simple_repeat 2 38 0 248 241 81 46 chrX 145325018 145325192 -17274738 - L1ME LINE L1 -535 5586 5407 823 116 210 0 chrX 145326076 145326214 -17273716 - AluSg/x SINE Alu -12 300 134 1916 79 0 0 chrX 145326249 145326514 -17273416 - MER41B LTR ERV1 -368 267 3 181 128 0 77 chrX 145327330 145327369 -17272561 + L2 LINE L2 2792 2827 -487 433 135 53 18 chrX 145327761 145328106 -17271824 + (TA)n Simple_repeat Simple_repeat 1 357 0 234 300 71 0 chrX 145328412 145328482 -17271448 - MIR SINE MIR -56 152 78 880 214 193 25 chrX 145328600 145328885 -17271045 + MSTD LTR MaLR 2 334 -62 495 141 0 83 chrX 145328847 145328968 -17270962 + MLT2B2 LTR ERVL 405 515 0 * 896 267 13 9 chrX 145329256 145329481 -17270449 - MIR SINE MIR -5 257 32 562 235 24 6 chrX 145331525 145331691 -17268239 - MER96B DNA MER1_type? -236 181 13 282 56 0 0 chrX 145332244 145332280 -17267650 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 2445 74 0 23 chrX 145333208 145333517 -17266413 - AluSx SINE Alu -10 302 1 1084 265 49 0 chrX 145333715 145334040 -17265890 + MER58B DNA MER1_type 1 341 0 306 0 0 0 chrX 145334387 145334421 -17265509 + (TC)n Simple_repeat Simple_repeat 2 35 0 254 261 67 59 chrX 145334535 145334654 -17265276 - MIR SINE MIR -62 200 81 1864 83 0 0 chrX 145335912 145336142 -17263788 - AluSp SINE Alu -83 230 1 231 395 20 14 chrX 145336146 145336293 -17263637 + L2 LINE L2 2941 3088 -184 188 278 209 27 chrX 145336441 145336628 -17263302 + L2 LINE L2 3045 3265 -48 291 308 50 100 chrX 145336669 145336909 -17263021 + L2 LINE L2 3041 3268 -4 1529 192 10 29 chrX 145336972 145337285 -17262645 + AluJo SINE Alu 1 307 -5 549 44 0 0 chrX 145337285 145337353 -17262577 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 2373 87 3 31 chrX 145337357 145337679 -17262251 + AluSp SINE Alu 1 313 0 2288 97 6 13 chrX 145337953 145338264 -17261666 + AluSq SINE Alu 1 309 -4 32 57 0 0 chrX 145338373 145338426 -17261504 + AT_rich Low_complexity Low_complexity 1 53 0 2296 109 0 0 chrX 145338764 145339066 -17260864 + AluSx SINE Alu 1 302 -10 199 286 43 43 chrX 145341019 145341089 -17258841 - L2 LINE L2 0 3272 3203 531 188 128 0 chrX 145341097 145341214 -17258716 - MIR SINE MIR -68 194 63 306 242 66 11 chrX 145342361 145342452 -17257478 + MER5B DNA MER1_type 82 177 -1 2456 84 0 3 chrX 145342557 145342866 -17257064 + AluSc SINE Alu 1 308 -1 597 218 67 8 chrX 145342883 145343122 -17256808 - MER33 DNA MER1_type -14 310 58 408 304 76 6 chrX 145343280 145343438 -17256492 - MIR3 SINE MIR -21 187 19 5134 97 6 6 chrX 145345211 145346003 -17253927 + L1PB2 LINE L1 5359 6150 -1 260 161 69 46 chrX 145346041 145346128 -17253802 - L1MA8 LINE L1 -2 6289 6201 2487 109 51 2 chrX 145346173 145346604 -17253326 - L1MA8 LINE L1 -93 6198 5747 1637 166 0 50 chrX 145346636 145346938 -17252992 + AluJb SINE Alu 1 287 -25 229 99 58 33 chrX 145347726 145347847 -17252083 + (TA)n Simple_repeat Simple_repeat 2 125 0 312 298 124 56 chrX 145347870 145348031 -17251899 - MIR SINE MIR -56 206 35 2357 86 0 0 chrX 145348503 145348795 -17251135 + AluSq SINE Alu 1 292 -21 2341 80 3 7 chrX 145349083 145349385 -17250545 - AluSq SINE Alu -12 301 1 1499 109 20 72 chrX 145350250 145350554 -17249376 + L1MA7 LINE L1 5997 6284 -7 747 298 177 19 chrX 145351175 145351554 -17248376 + L3 LINE CR1 1133 1571 -6 2039 98 0 51 chrX 145351748 145352043 -17247887 + AluSg SINE Alu 1 280 -30 2349 105 0 6 chrX 145353376 145353690 -17246240 - AluSx SINE Alu 0 312 1 180 0 0 0 chrX 145353732 145353752 -17246178 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 * 360 0 0 0 chrX 145353751 145353791 -17246139 + (TC)n Simple_repeat Simple_repeat 2 41 0 1000 192 23 0 chrX 145355805 145355977 -17243953 - MER45A DNA AcHobo -2 176 1 543 261 6 36 chrX 145356772 145356937 -17242993 + HsTC2 DNA Tc2 4 163 -1735 560 141 28 14 chrX 145356946 145357088 -17242842 + HsTC2 DNA Tc2 1710 1853 -45 2290 97 0 3 chrX 145357114 145357413 -17242517 + AluSp SINE Alu 5 302 -11 996 193 78 16 chrX 145357764 145358075 -17241855 - MER33 DNA MER1_type 0 324 1 379 294 96 0 chrX 145358283 145358419 -17241511 + Charlie2a DNA MER1_type 1 149 -2633 * 3352 225 108 63 chrX 145358411 145358630 -17241300 + Charlie2a DNA MER1_type 628 836 -2026 4380 112 9 3 chrX 145358630 145359292 -17240638 + L1MA4A LINE L1 5626 6291 -12 3352 225 108 63 chrX 145359292 145359431 -17240499 + Charlie2a DNA MER1_type 836 967 -1895 1959 161 0 0 chrX 145359431 145359741 -17240189 + AluSx SINE Alu 1 310 -2 3352 225 108 63 chrX 145359741 145359896 -17240034 + Charlie2a DNA MER1_type 967 1114 -1748 2250 111 0 0 chrX 145359896 145360203 -17239727 + AluSc SINE Alu 1 307 -2 3352 225 108 63 chrX 145360203 145360765 -17239165 + Charlie2a DNA MER1_type 1114 1649 -1213 2222 92 3 0 chrX 145360765 145361075 -17238855 + AluSp SINE Alu 1 311 0 3352 225 108 63 chrX 145361075 145361566 -17238364 + Charlie2a DNA MER1_type 1649 2116 -746 2349 98 0 10 chrX 145361566 145361871 -17238059 + AluSx SINE Alu 1 302 -10 3352 225 108 63 chrX 145361871 145362437 -17237493 + Charlie2a DNA MER1_type 2116 2862 0 405 304 161 0 chrX 145363061 145363229 -17236701 - MIR SINE MIR -21 241 47 2300 104 3 0 chrX 145363568 145363865 -17236065 + AluSx SINE Alu 1 298 -14 223 331 19 19 chrX 145364097 145364251 -17235679 + (TATG)n Simple_repeat Simple_repeat 4 157 0 2335 95 0 13 chrX 145364392 145364709 -17235221 - AluSq SINE Alu 0 313 1 638 283 44 0 chrX 145365041 145365221 -17234709 - MIR SINE MIR -71 191 4 313 248 19 48 chrX 145365221 145365326 -17234604 - MIR SINE MIR -145 117 16 215 257 73 64 chrX 145365343 145365430 -17234500 - MIR SINE MIR -66 196 106 2200 130 0 3 chrX 145365430 145365738 -17234192 + AluSg SINE Alu 1 307 -3 215 257 73 64 chrX 145365738 145365759 -17234171 - MIR SINE MIR -156 106 87 2398 94 0 0 chrX 145366456 145366765 -17233165 + AluSc SINE Alu 1 309 0 1938 103 4 0 chrX 145368361 145368614 -17231316 - AluSp SINE Alu -1 312 59 2051 129 32 45 chrX 145568614 145568735 -17031195 + L1MA8 LINE L1 5913 6034 -257 2341 86 0 3 chrX 145568735 145569026 -17030904 - AluSg SINE Alu -20 290 1 2051 129 32 45 chrX 145569026 145569283 -17030647 + L1MA8 LINE L1 6034 6286 -5 607 196 122 7 chrX 145569319 145569467 -17030463 + AluSg/x SINE Alu 137 301 -11 2193 129 0 10 chrX 145569470 145569781 -17030149 + AluSx SINE Alu 1 308 -4 2020 151 0 13 chrX 145570114 145570426 -17029504 - AluJo SINE Alu -2 310 3 2283 104 13 7 chrX 145571265 145571563 -17028367 - AluSx SINE Alu -12 300 1 274 297 153 18 chrX 145571585 145571696 -17028234 + L2 LINE L2 3134 3259 -13 1641 128 7 105 chrX 145572233 145572538 -17027392 - AluSx SINE Alu -37 275 1 1019 139 52 6 chrX 145572618 145572790 -17027140 + Tigger1 DNA MER2_type 2238 2417 -1 2568 156 54 17 chrX 145572792 145573273 -17026657 + L1MA8 LINE L1 5787 6285 -6 2611 227 127 22 chrX 145573298 145573648 -17026282 + L1ME2 LINE L1 4910 5222 -942 2421 91 0 3 chrX 145573648 145573956 -17025974 + AluSg SINE Alu 1 307 -3 2611 227 127 22 chrX 145573956 145574708 -17025222 + L1ME2 LINE L1 5222 6139 -25 1051 161 23 0 chrX 145574948 145575122 -17024808 + AluJb SINE Alu 134 311 -1 332 282 0 24 chrX 145577094 145577106 -17022824 + (TA)n Simple_repeat Simple_repeat 2 13 -109 818 180 0 0 chrX 145577106 145577228 -17022702 + FLAM_A SINE Alu 1 122 -11 332 282 0 24 chrX 145577228 145577313 -17022617 + (TA)n Simple_repeat Simple_repeat 13 98 -24 1990 148 7 0 chrX 145577313 145577611 -17022319 - AluJo SINE Alu -12 300 1 332 282 0 24 chrX 145577611 145577636 -17022294 + (TA)n Simple_repeat Simple_repeat 98 122 0 2254 119 0 6 chrX 145577876 145578187 -17021743 + AluSx SINE Alu 1 309 -3 1029 230 79 55 chrX 145578197 145578615 -17021315 + L1MC/D LINE L1 3585 4012 -2134 854 163 0 0 chrX 145578615 145578750 -17021180 + AluJb SINE Alu 1 135 -177 270 0 0 0 chrX 145578754 145578784 -17021146 + (CA)n Simple_repeat Simple_repeat 2 31 0 438 241 44 22 chrX 145578784 145578921 -17021009 + L1MC/D LINE L1 4064 4203 -1943 2098 129 0 3 chrX 145578936 145579230 -17020700 + AluSg SINE Alu 1 293 -17 248 261 72 44 chrX 145579246 145579426 -17020504 + L1MC5 LINE L1 7491 7675 -286 845 267 86 68 chrX 145579448 145579830 -17020100 + LTR16C LTR ERVL 4 392 -99 392 152 15 0 chrX 145579924 145579990 -17019940 + LTR16C LTR ERVL 425 491 0 572 201 72 62 chrX 145579990 145580053 -17019877 + L1MC5 LINE L1 7718 7779 -182 2248 112 0 0 chrX 145580053 145580339 -17019591 + AluSq SINE Alu 3 288 -25 572 201 72 62 chrX 145580339 145580469 -17019461 + L1MC5 LINE L1 7779 7913 -48 785 183 0 29 chrX 145580664 145580801 -17019129 + FLAM_C SINE Alu 1 133 0 2286 117 0 0 chrX 145580906 145581204 -17018726 + AluSx SINE Alu 1 298 -14 516 269 60 10 chrX 145581221 145581563 -17018367 + L1MC/D LINE L1 5125 5473 -743 305 268 0 0 chrX 145581652 145581734 -17018196 + (TA)n Simple_repeat Simple_repeat 1 82 0 341 275 22 51 chrX 145581925 145582063 -17017867 - L2 LINE L2 -5 3308 3175 2135 134 13 0 chrX 145582324 145582629 -17017301 + AluJb SINE Alu 1 309 -3 7694 140 14 4 chrX 145582666 145584615 -17015315 + L1PA11 LINE L1 4207 6169 -5 283 247 25 49 chrX 145584769 145584838 -17015092 - MER103 DNA DNA -39 127 59 790 155 0 63 chrX 145584838 145584980 -17014950 + FLAM_C SINE Alu 1 133 0 283 247 25 49 chrX 145584980 145584991 -17014939 - MER103 DNA DNA -107 59 49 203 105 53 0 chrX 145585035 145585073 -17014857 + CT-rich Low_complexity Low_complexity 1 40 0 246 288 34 42 chrX 145585075 145585193 -17014737 + MIR3 SINE MIR 84 200 -8 769 182 0 0 chrX 145585511 145585632 -17014298 + FLAM_C SINE Alu 2 122 -11 1942 155 20 3 chrX 145585694 145586035 -17013895 + AluJo SINE Alu 1 346 0 1700 149 54 10 chrX 145586706 145587002 -17012928 - AluJo SINE Alu -3 309 1 755 148 57 0 chrX 145587282 145587404 -17012526 + MER50 LTR ERV1 1 129 -605 1578 153 0 4 chrX 145587406 145587642 -17012288 + AluSx SINE Alu 42 276 -36 803 153 0 33 chrX 145587670 145587853 -17012077 + GA-rich Low_complexity Low_complexity 4 180 0 3322 142 29 20 chrX 145587922 145588512 -17011418 + MER50 LTR ERV1 117 711 -23 434 141 384 40 chrX 145588677 145588776 -17011154 - FLAM_C SINE Alu 0 133 1 2941 85 23 10 chrX 145589547 145589946 -17009984 + MLT2A1 LTR ERVL 1 404 -40 180 219 0 0 chrX 145589946 145589987 -17009943 + (TA)n Simple_repeat Simple_repeat 1 41 0 247 289 24 0 chrX 145589991 145590074 -17009856 - L1MC4 LINE L1 -1344 6698 6614 306 233 14 0 chrX 145590093 145590166 -17009764 + L1MCa LINE L1 1995 2068 -4358 229 120 0 80 chrX 145590177 145590227 -17009703 - LTR66 LTR ERVL -171 439 394 335 308 76 49 chrX 145590639 145590824 -17009106 + MIR3 SINE MIR 16 205 -3 397 283 0 11 chrX 145591052 145591144 -17008786 + MIR SINE MIR 42 132 -76 1920 139 111 153 chrX 145591193 145591531 -17008399 + LTR29 LTR ERV1 1 301 -321 216 0 0 0 chrX 145591531 145591555 -17008375 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1920 139 111 153 chrX 145591555 145591865 -17008065 + LTR29 LTR ERV1 301 622 0 255 194 0 15 chrX 145591867 145591934 -17007996 + L1MA4A LINE L1 5149 5214 -932 936 117 0 8 chrX 145591934 145592062 -17007868 + FLAM_C SINE Alu 1 127 -6 6723 107 13 46 chrX 145592074 145592978 -17006952 + L1MA4A LINE L1 5191 6049 -254 1820 167 10 13 chrX 145592978 145593284 -17006646 - AluJb SINE Alu -7 305 1 6723 107 13 46 chrX 145593284 145593531 -17006399 + L1MA4A LINE L1 6049 6303 0 636 177 50 14 chrX 145594146 145594287 -17005643 + LTR23 LTR ERV1 1 146 -291 375 304 0 11 chrX 145594330 145594422 -17005508 - MIR SINE MIR -76 132 42 363 297 76 49 chrX 145594649 145594834 -17005096 - MIR3 SINE MIR -3 205 16 1455 162 3 64 chrX 145595044 145595340 -17004590 + AluJb SINE Alu 27 304 -8 1403 124 73 11 chrX 145595341 145595619 -17004311 + LTR23 LTR ERV1 140 466 -1 21 82 0 0 chrX 145595771 145595820 -17004110 + AT_rich Low_complexity Low_complexity 1 49 0 665 159 61 61 chrX 145595820 145595952 -17003978 - FLAM_C SINE Alu 0 133 2 1632 141 14 31 chrX 145595956 145596277 -17003653 - AluJo SINE Alu 0 316 1 1215 97 5 72 chrX 145596468 145596612 -17003318 - MER4B LTR ERV1 -1 609 480 2160 100 3 20 chrX 145596612 145596932 -17002998 - AluSx SINE Alu 0 312 1 1215 97 5 72 chrX 145596932 145596982 -17002948 - MER4B LTR ERV1 -130 480 428 2377 84 7 0 chrX 145596984 145597282 -17002648 + AluSp SINE Alu 1 300 -13 235 200 14 14 chrX 145597282 145597352 -17002578 + (TA)n Simple_repeat Simple_repeat 1 70 0 598 135 10 133 chrX 145597362 145597562 -17002368 - MER4A LTR ERV1 -170 494 261 605 124 21 10 chrX 145597562 145597659 -17002271 - MER4A LTR ERV1 -566 98 1 2968 144 34 17 chrX 145598314 145598840 -17001090 + LTR34 LTR ERV1 2 536 -163 864 161 13 13 chrX 145598844 145598993 -17000937 - AluJo SINE Alu -54 258 110 715 195 18 0 chrX 145599029 145599142 -17000788 - AluJo SINE Alu -187 115 1 411 104 45 0 chrX 145599143 145599210 -17000720 + LTR34 LTR ERV1 528 597 -102 1641 170 3 14 chrX 145599211 145599493 -17000437 + AluJo SINE Alu 1 279 -33 788 144 0 0 chrX 145599510 145599628 -17000302 + LTR34 LTR ERV1 582 699 0 4842 107 11 2 chrX 145600061 145600699 -16999231 + LTR9B LTR ERV1 1 644 0 246 274 96 0 chrX 145600873 145600946 -16998984 - MIR SINE MIR -116 146 67 1659 170 55 0 chrX 145601261 145601550 -16998380 - AluJb SINE Alu -7 305 1 225 289 32 26 chrX 145602219 145602255 -16997675 + L1ME4a LINE L1 5904 5938 -183 1734 173 0 14 chrX 145602255 145602550 -16997380 - AluJb SINE Alu -21 291 1 225 289 32 26 chrX 145602550 145602669 -16997261 + L1ME4a LINE L1 5938 6060 -61 26 0 0 0 chrX 145602704 145602730 -16997200 + AT_rich Low_complexity Low_complexity 1 26 0 2276 137 8 17 chrX 145602905 145603262 -16996668 - THE1C LTR MaLR 0 375 22 583 291 41 23 chrX 145603682 145603902 -16996028 + MIR SINE MIR 29 252 -10 313 102 305 0 chrX 145603973 145604032 -16995898 + MADE1 DNA Mariner 3 79 -1 224 274 16 0 chrX 145604878 145604940 -16994990 + L2 LINE L2 3251 3313 0 1223 199 58 8 chrX 145605552 145605738 -16994192 - AluJo SINE Alu 0 320 116 312 0 62 0 chrX 145605738 145605786 -16994144 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 1223 199 58 8 chrX 145605786 145605878 -16994052 - AluJo SINE Alu -204 116 30 570 173 0 0 chrX 145605878 145605959 -16993971 - AluJ/FLAM SINE Alu -230 82 2 240 312 41 42 chrX 145607048 145607103 -16992827 - MIR SINE MIR -46 216 162 1688 179 7 3 chrX 145607103 145607400 -16992530 - AluJo SINE Alu -14 298 1 240 312 41 42 chrX 145607400 145607544 -16992386 - MIR SINE MIR -100 162 16 433 184 0 0 chrX 145607626 145607702 -16992228 + L1MD2 LINE L1 6017 6092 -267 406 269 135 13 chrX 145608012 145608168 -16991762 + MIR SINE MIR 9 183 -79 2741 81 20 3 chrX 145608181 145608539 -16991391 + L1PA11 LINE L1 5811 6174 0 210 238 0 0 chrX 145608592 145608634 -16991296 + L2 LINE L2 3210 3251 -21 2018 110 33 7 chrX 145609668 145609967 -16989963 - AluSq SINE Alu -4 309 3 333 259 63 52 chrX 145609994 145610168 -16989762 - L1ME4a LINE L1 0 6121 5946 531 253 0 5 chrX 145610628 145611051 -16988879 + (CCA)n Simple_repeat Simple_repeat 1 421 0 306 125 214 0 chrX 145611252 145611308 -16988622 - L2 LINE L2 0 3313 3246 441 0 0 0 chrX 145611377 145611426 -16988504 + (CA)n Simple_repeat Simple_repeat 1 49 0 2438 100 0 0 chrX 145611858 145612168 -16987762 - AluSx SINE Alu -1 311 2 848 152 0 43 chrX 145612195 145612333 -16987597 - FLAM_C SINE Alu -1 132 1 1113 138 0 0 chrX 145613832 145613999 -16985931 + AluSg/x SINE Alu 136 302 -10 883 27 68 5 chrX 145613999 145614370 -16985560 + (TA)n Simple_repeat Simple_repeat 1 394 0 1863 169 15 3 chrX 145614381 145614706 -16985224 + MLT1A1 LTR MaLR 37 365 0 302 263 40 91 chrX 145615091 145615184 -16984746 + HAL1 LINE L1 1 80 -2427 2219 92 3 3 chrX 145615184 145615478 -16984452 + AluSg SINE Alu 1 294 -16 302 263 40 91 chrX 145615478 145615582 -16984348 + HAL1 LINE L1 80 188 -2319 2233 117 0 13 chrX 145615998 145616306 -16983624 - AluSx SINE Alu -8 304 1 456 259 35 17 chrX 145616318 145616492 -16983438 + HAL1 LINE L1 968 1144 -1363 721 288 108 7 chrX 145616510 145616798 -16983132 + HAL1 LINE L1 1281 1597 -910 2300 118 20 61 chrX 145616807 145617198 -16982732 - THE1C LTR MaLR 0 375 1 948 244 112 57 chrX 145617198 145617714 -16982216 - L2 LINE L2 -8 3305 2764 1587 222 52 0 chrX 145617724 145618048 -16981882 - MER58B DNA MER1_type 0 341 1 635 271 5 63 chrX 145618052 145618137 -16981793 + HAL1 LINE L1 1601 1689 -818 2239 115 3 6 chrX 145618137 145618449 -16981481 - AluSx SINE Alu -1 311 1 635 271 5 63 chrX 145618449 145618584 -16981346 + HAL1 LINE L1 1689 1808 -699 644 179 14 76 chrX 145618946 145619091 -16980839 + FLAM_C SINE Alu 2 137 -6 655 215 18 8 chrX 145619200 145619365 -16980565 - MER3 DNA MER1_type -55 154 1 831 201 25 0 chrX 145619798 145619957 -16979973 + MER45A DNA AcHobo 16 178 0 287 322 44 0 chrX 145619962 145620052 -16979878 + L2 LINE L2 3134 3227 -45 2154 78 0 0 chrX 145620834 145621102 -16978828 + AluSg1 SINE Alu 41 308 -1 540 245 26 116 chrX 145621298 145621531 -16978399 + MER20B DNA MER1_type 1 212 -571 2765 147 25 14 chrX 145621539 145621775 -16978155 - Tigger2 DNA MER2_type 0 2718 2473 2481 18 0 0 chrX 145621775 145622047 -16977883 + AluY SINE Alu 28 299 -12 2765 147 25 14 chrX 145622047 145622251 -16977679 - Tigger2 DNA MER2_type -245 2473 2273 311 217 0 0 chrX 145622247 145622307 -16977623 - Tigger2 DNA MER2_type -2654 64 5 * 578 202 130 49 chrX 145622344 145622567 -16977363 + MER20B DNA MER1_type 276 516 -267 2254 69 0 24 chrX 145622609 145622935 -16976995 - AluY SINE Alu 0 319 1 486 93 56 65 chrX 145623016 145623124 -16976806 + MER20B DNA MER1_type 527 633 -150 2241 108 0 0 chrX 145623163 145623458 -16976472 - AluSq SINE Alu -18 295 1 985 266 40 0 chrX 145623481 145623729 -16976201 - MIR SINE MIR 0 262 5 387 188 0 52 chrX 145623761 145623857 -16976073 + MER20B DNA MER1_type 670 760 -23 248 245 167 10 chrX 145625254 145625356 -16974574 + L2 LINE L2 3187 3304 -9 1765 162 185 56 chrX 145625396 145625452 -16974478 - MLT1D LTR MaLR 0 505 458 3789 129 4 2 chrX 145625452 145625978 -16973952 + MER1A DNA MER1_type 1 527 0 1765 162 185 56 chrX 145625978 145626365 -16973565 - MLT1D LTR MaLR -47 458 5 1867 139 0 0 chrX 145629028 145629301 -16970629 + AluJo SINE Alu 9 281 -31 1994 152 34 32 chrX 145629333 145629758 -16970172 + L1PA16 LINE L1 5006 5426 -740 2245 113 0 3 chrX 145629758 145630068 -16969862 + AluSx SINE Alu 1 309 -3 1994 152 34 32 chrX 145630068 145630249 -16969681 + L1PA16 LINE L1 5426 5605 -561 379 143 0 0 chrX 145630255 145630318 -16969612 + MER41B LTR ERV1 485 547 -88 2882 164 29 40 chrX 145630331 145630909 -16969021 + L1PA16 LINE L1 5595 6166 0 276 30 0 0 chrX 145631581 145631614 -16968316 + (TATG)n Simple_repeat Simple_repeat 4 36 0 697 206 0 29 chrX 145631625 145631761 -16968169 - FLAM_C SINE Alu -1 132 1 2168 130 0 0 chrX 145631800 145632099 -16967831 + AluSx SINE Alu 1 299 -13 29 28 0 0 chrX 145632125 145632161 -16967769 + AT_rich Low_complexity Low_complexity 1 36 0 2267 112 0 0 chrX 145632314 145632608 -16967322 - AluSq SINE Alu -19 294 1 4416 167 99 36 chrX 145632608 145633284 -16966646 + Tigger6a DNA MER2_type 17 778 -819 1685 131 0 4 chrX 145633284 145633528 -16966402 + AluJb SINE Alu 1 243 -69 4416 167 99 36 chrX 145633528 145633855 -16966075 + Tigger6a DNA MER2_type 778 1083 0 545 190 0 20 chrX 145633870 145633970 -16965960 - AluJb SINE Alu -5 307 210 215 312 86 11 chrX 145634365 145634458 -16965472 + L2 LINE L2 3173 3272 0 2602 56 0 0 chrX 145634607 145634912 -16965018 + AluY SINE Alu 2 306 -5 2377 108 0 0 chrX 145635345 145635650 -16964280 + AluSx SINE Alu 1 305 -7 334 244 0 0 chrX 145635657 145635747 -16964183 + L1MC4 LINE L1 6614 6703 -1339 447 163 0 0 chrX 145635756 145635836 -16964094 + (TA)n Simple_repeat Simple_repeat 1 80 0 1764 171 0 7 chrX 145635842 145636169 -16963761 + AluJo SINE Alu 1 325 0 233 182 0 30 chrX 145636170 145636236 -16963694 + (TA)n Simple_repeat Simple_repeat 1 64 0 1080 273 17 34 chrX 145636256 145636612 -16963318 - L1MC4a LINE L1 -1940 5868 5519 2091 121 3 0 chrX 145636743 145637032 -16962898 + AluSx SINE Alu 3 292 -20 21 0 0 0 chrX 145637032 145637053 -16962877 + AT_rich Low_complexity Low_complexity 1 21 0 2310 114 0 0 chrX 145637738 145638036 -16961894 + AluSx SINE Alu 1 298 -14 1943 124 35 0 chrX 145638612 145638732 -16961198 + AluSg SINE Alu 1 115 -195 315 0 0 0 chrX 145638732 145638767 -16961163 + (CA)n Simple_repeat Simple_repeat 2 36 0 1943 124 35 0 chrX 145638767 145638928 -16961002 + AluSg SINE Alu 115 292 -18 633 118 0 0 chrX 145638928 145639038 -16960892 + (GGGGA)n Simple_repeat Simple_repeat 3 112 0 1961 238 87 18 chrX 145639566 145640070 -16959860 - MLT1F LTR MaLR -2 540 2 228 0 119 0 chrX 145640267 145640309 -16959621 + T-rich Low_complexity Low_complexity 2 48 0 1887 134 11 4 chrX 145641115 145641391 -16958539 + AluSx SINE Alu 4 281 -31 209 56 0 28 chrX 145641395 145641431 -16958499 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 236 167 0 0 chrX 145642170 145642206 -16957724 + AluJo SINE Alu 3 38 -262 1486 154 0 13 chrX 145642206 145642440 -16957490 + AluJo SINE Alu 76 306 -6 2043 118 7 0 chrX 145642685 145642994 -16956936 + AluSg SINE Alu 1 311 0 648 128 0 21 chrX 145643109 145643203 -16956727 + AluJ/FLAM SINE Alu 2 93 -219 1671 153 50 0 chrX 145643216 145643497 -16956433 + AluJo SINE Alu 13 306 0 583 278 133 4 chrX 145643497 145643731 -16956199 + LTR33 LTR ERVL 251 514 -7 4518 165 18 3 chrX 145644392 145645163 -16954767 - L1MB1 LINE L1 0 6168 5386 3694 193 13 3 chrX 145645288 145645994 -16953936 - L1MB1 LINE L1 -804 5342 4630 1748 167 26 14 chrX 145645989 145646337 -16953593 + L1 LINE L1 4198 4549 -1597 * 701 111 10 0 chrX 145647046 145647145 -16952785 - MLT1B LTR MaLR 0 390 291 435 123 0 0 chrX 145847147 145847212 -16752718 + AluSp/q SINE Alu 234 298 -15 2831 118 29 7 chrX 145848047 145848497 -16751433 - LTR46 LTR ERV1 0 460 1 3199 222 35 34 chrX 145850428 145851290 -16748640 + L1M1 LINE L1 13 875 -6690 4036 130 14 2 chrX 145851291 145851929 -16748001 + L1PA15 LINE L1 5515 6160 -5 1288 198 35 15 chrX 145851946 145852289 -16747641 + L1MA8 LINE L1 5937 6286 -5 2244 96 3 16 chrX 145852999 145853311 -16746619 + AluSx SINE Alu 1 308 -4 452 198 0 9 chrX 145853538 145853644 -16746286 + GA-rich Low_complexity Low_complexity 3 107 0 605 267 88 65 chrX 145853829 145854091 -16745839 + L2 LINE L2 2708 2975 -339 2103 133 3 0 chrX 145854133 145854442 -16745488 - AluSg SINE Alu 0 310 1 204 213 21 0 chrX 145854579 145854626 -16745304 + L2 LINE L2 3261 3308 -5 740 310 9 9 chrX 145854856 145855105 -16744825 + MIR SINE MIR 18 262 0 645 69 0 0 chrX 145855165 145855252 -16744678 + (CA)n Simple_repeat Simple_repeat 2 88 0 2098 121 3 0 chrX 145855252 145855542 -16744388 - AluY SINE Alu -20 291 1 233 128 26 0 chrX 145855579 145855618 -16744312 - MIR3 SINE MIR -10 198 159 1329 118 69 8 chrX 145855767 145856012 -16743918 + LTR19A LTR ERV1 1 260 -226 1755 106 8 4 chrX 145856012 145856257 -16743673 - AluSq SINE Alu -67 246 1 8811 95 60 67 chrX 145856257 145857889 -16742041 + LTR19-int LTR ERV1 1462 3050 -2536 4770 143 62 25 chrX 145857910 145858923 -16741007 + LTR19-int LTR ERV1 3979 5029 -1569 2266 99 3 3 chrX 145858923 145859217 -16740713 + AluSg1 SINE Alu 1 294 -15 2831 118 29 7 chrX 145860052 145860502 -16739428 - LTR46 LTR ERV1 0 460 1 3220 220 35 34 chrX 145862433 145863295 -16736635 + L1M1 LINE L1 13 875 -6690 4036 130 14 2 chrX 145863296 145863934 -16735996 + L1PA15 LINE L1 5515 6160 -5 1288 198 35 15 chrX 145863951 145864294 -16735636 + L1MA8 LINE L1 5937 6286 -5 2244 96 3 16 chrX 145865004 145865316 -16734614 + AluSx SINE Alu 1 308 -4 452 198 0 9 chrX 145865543 145865649 -16734281 + GA-rich Low_complexity Low_complexity 3 107 0 605 267 88 65 chrX 145865834 145866096 -16733834 + L2 LINE L2 2708 2975 -339 2103 133 3 0 chrX 145866138 145866447 -16733483 - AluSg SINE Alu 0 310 1 204 213 21 0 chrX 145866584 145866631 -16733299 + L2 LINE L2 3261 3308 -5 740 310 9 9 chrX 145866861 145867110 -16732820 + MIR SINE MIR 18 262 0 609 72 0 0 chrX 145867170 145867253 -16732677 + (CA)n Simple_repeat Simple_repeat 2 84 0 2098 121 3 0 chrX 145867253 145867543 -16732387 - AluY SINE Alu -20 291 1 233 128 26 0 chrX 145867580 145867619 -16732311 - MIR3 SINE MIR -10 198 159 1329 118 69 8 chrX 145867768 145868013 -16731917 + LTR19A LTR ERV1 1 260 -226 1755 106 8 4 chrX 145868013 145868258 -16731672 - AluSq SINE Alu -67 246 1 12427 85 43 41 chrX 145868258 145871339 -16728591 + LTR19-int LTR ERV1 1462 4619 -967 4820 92 10 7 chrX 145871338 145872047 -16727883 + LTR19-int LTR ERV1 4824 5534 -52 * 6633 188 20 16 chrX 145872111 145874595 -16725335 - L1 LINE L1 -2810 4755 2262 * 12169 57 2 1 chrX 145874584 145876243 -16723687 - L1PA4 LINE L1 -3549 2597 936 21585 49 9 0 chrX 145876243 145879777 -16720153 + L1PA4 LINE L1 2607 6155 0 1249 275 54 11 chrX 145880155 145880830 -16719100 + L1M4c LINE L1 2098 2810 -3572 357 296 0 64 chrX 145880832 145880957 -16718973 - L2 LINE L2 -12 3301 3185 1864 142 26 49 chrX 145881051 145881442 -16718488 - MSTC LTR MaLR -11 417 55 23 0 0 0 chrX 145881442 145881465 -16718465 + AT_rich Low_complexity Low_complexity 1 23 0 1864 142 26 49 chrX 145881465 145881519 -16718411 - MSTC LTR MaLR -373 55 1 280 321 0 69 chrX 145881524 145881655 -16718275 + L2 LINE L2 3188 3309 -4 30 27 0 0 chrX 145881942 145881979 -16717951 + AT_rich Low_complexity Low_complexity 1 37 0 262 313 87 0 chrX 145882154 145882269 -16717661 + MIR SINE MIR 64 188 -74 2127 98 7 11 chrX 145882288 145882574 -16717356 + AluSc SINE Alu 1 285 -24 2016 89 0 0 chrX 145883062 145883319 -16716611 - AluSx SINE Alu -17 295 39 227 306 59 12 chrX 145883867 145883952 -16715978 - L2 LINE L2 -5 3267 3179 327 353 49 27 chrX 145884043 145884267 -16715663 - MIR SINE MIR -31 231 3 1508 279 67 19 chrX 145884949 145885723 -16714207 - L1ME3 LINE L1 -7 6653 5843 438 278 67 14 chrX 145885724 145885933 -16713997 - L1ME3 LINE L1 -888 5756 5537 * 1148 259 77 25 chrX 145885931 145886511 -16713419 - L1ME3 LINE L1 -1310 5334 4715 492 18 0 0 chrX 145886511 145886568 -16713362 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 1148 259 77 25 chrX 145886568 145886639 -16713291 - L1ME3 LINE L1 -1929 4715 4649 498 283 112 35 chrX 145886651 145887025 -16712905 - L1ME3 LINE L1 -2091 4553 4151 1692 215 69 43 chrX 145887025 145887517 -16712413 - MLT1D LTR MaLR 0 505 1 1935 99 43 119 chrX 145887532 145887683 -16712247 + THE1B LTR MaLR 1 162 -202 2185 110 7 7 chrX 145887683 145887984 -16711946 - AluSx SINE Alu -11 301 1 1935 99 43 119 chrX 145887984 145888173 -16711757 + THE1B LTR MaLR 162 310 -54 1876 126 54 0 chrX 145888173 145888450 -16711480 - AluSx SINE Alu -8 304 13 1935 99 43 119 chrX 145888450 145888502 -16711428 + THE1B LTR MaLR 310 364 0 2463 69 3 0 chrX 145888502 145888837 -16711093 + THE1B-int LTR MaLR 1 336 -1244 5904 52 147 67 chrX 145888837 145889921 -16710009 - MER11A LTR ERVK 0 1266 3 8335 107 1 25 chrX 145889923 145890090 -16709840 + THE1B-int LTR MaLR 331 501 -1079 2190 125 0 6 chrX 145890090 145890402 -16709528 + AluSg SINE Alu 1 310 0 8335 107 1 25 chrX 145890402 145891511 -16708419 + THE1B-int LTR MaLR 501 1576 -4 2088 139 51 20 chrX 145891515 145891868 -16708062 + THE1B LTR MaLR 1 364 0 609 239 8 0 chrX 145891927 145892057 -16707873 - FLAM_A SINE Alu -1 132 2 407 320 58 22 chrX 145892511 145892924 -16707006 - L1ME3 LINE L1 -4653 2172 1745 202 206 0 0 chrX 145892937 145892971 -16706959 + (CATA)n Simple_repeat Simple_repeat 1 34 0 1769 128 0 0 chrX 145892972 145893221 -16706709 - AluY SINE Alu -28 283 35 2314 91 0 0 chrX 145893345 145893643 -16706287 - AluSc SINE Alu -11 298 1 4257 227 96 62 chrX 145893654 145894246 -16705684 - L1MC3 LINE L1 -8 7777 7206 254 263 0 13 chrX 145894246 145894322 -16705608 - MLT1F1 LTR MaLR -460 107 33 4257 227 96 62 chrX 145894322 145895199 -16704731 - L1MC3 LINE L1 -579 7206 6181 2049 120 7 3 chrX 145895361 145895670 -16704260 + AluSq SINE Alu 1 310 -3 243 61 0 0 chrX 145895746 145895779 -16704151 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1759 246 44 6 chrX 145896011 145896486 -16703444 + MER90 LTR ERV1 10 502 -112 299 194 0 56 chrX 145896616 145896688 -16703242 + MER90 LTR ERV1 520 587 -27 386 317 67 37 chrX 145896743 145897118 -16702812 - L1ME3 LINE L1 -5918 907 522 1077 163 0 0 chrX 145897152 145897348 -16702582 + L1MA5A LINE L1 6099 6294 -3 204 146 49 0 chrX 145897624 145897665 -16702265 - L2 LINE L2 -10 3303 3261 2573 126 3 18 chrX 145898272 145898653 -16701277 - THE1C LTR MaLR 0 375 1 647 288 0 6 chrX 145899138 145899301 -16700629 - MIR SINE MIR -54 208 47 494 205 18 36 chrX 145899717 145899829 -16700101 - L1ME3 LINE L1 -6419 123 14 279 307 0 13 chrX 145900049 145900124 -16699806 + MLT1J2 LTR MaLR 1 74 -519 2025 203 21 4 chrX 145900124 145900537 -16699393 + MLT2B1 LTR ERVL 1 516 -38 423 98 0 0 chrX 145900537 145900598 -16699332 + (TC)n Simple_repeat Simple_repeat 1 61 0 375 86 0 35 chrX 145900598 145900656 -16699274 + MLT2C2 LTR ERVL 406 461 -3 497 229 128 22 chrX 145900893 145901072 -16698858 + MLT1F LTR MaLR 337 534 -8 23 78 0 0 chrX 145901519 145901570 -16698360 + AT_rich Low_complexity Low_complexity 1 51 0 37607 78 38 3 chrX 145901588 145907524 -16692406 + L1PA5 LINE L1 4 6154 0 2351 71 14 0 chrX 145907614 145907911 -16692019 - AluSp SINE Alu -12 301 1 1502 193 7 10 chrX 145907948 145908115 -16691815 - AluJb SINE Alu -23 289 122 375 23 0 0 chrX 145908115 145908159 -16691771 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1502 193 7 10 chrX 145908159 145908281 -16691649 - AluJb SINE Alu -190 122 1 373 260 92 91 chrX 145908482 145908792 -16691138 + MLT1J2 LTR MaLR 106 450 0 2285 99 3 0 chrX 145909028 145909330 -16690600 - AluSx SINE Alu 0 312 10 376 302 22 66 chrX 145909459 145909641 -16690289 + MLT1H LTR MaLR 134 307 -242 260 286 38 29 chrX 145909663 145909768 -16690162 + MLT1H LTR MaLR 431 536 -13 6958 113 14 23 chrX 145910767 145911903 -16688027 - L1MA1 LINE L1 0 6302 5178 5413 222 24 19 chrX 145911908 145911951 -16687979 - L1M1 LINE L1 -6358 1207 1166 1908 147 7 26 chrX 145911951 145912257 -16687673 + AluJb SINE Alu 1 300 -12 5413 222 24 19 chrX 145912257 145913402 -16686528 - L1M1 LINE L1 -6399 1166 12 2144 79 7 18 chrX 145913780 145914059 -16685871 - AluSq SINE Alu -37 276 1 2526 173 109 27 chrX 145914495 145915016 -16684914 - LTR6A LTR ERV1 0 564 1 349 274 43 91 chrX 145915387 145915479 -16684451 - MIR3 SINE MIR -2 206 126 2120 83 0 61 chrX 145915479 145915792 -16684138 + AluSx SINE Alu 1 294 -18 349 274 43 91 chrX 145915792 145915885 -16684045 - MIR3 SINE MIR -82 126 30 995 264 42 3 chrX 145916162 145916473 -16683457 - MER33 DNA MER1_type -1 323 1 21 36 0 0 chrX 145916543 145916571 -16683359 + AT_rich Low_complexity Low_complexity 1 28 0 2162 111 58 63 chrX 145917356 145917410 -16682520 + THE1B LTR MaLR 4 57 -307 2274 92 30 0 chrX 145917410 145917705 -16682225 - AluSx SINE Alu -8 304 1 2162 111 58 63 chrX 145917705 145918012 -16681918 + THE1B LTR MaLR 57 363 -1 2033 98 7 49 chrX 145918317 145918624 -16681306 - AluSx SINE Alu -18 294 1 2244 88 0 26 chrX 145919495 145919801 -16680129 + AluSg SINE Alu 1 298 -12 5793 165 18 22 chrX 145919944 145921250 -16678680 + L1MA6 LINE L1 4907 6209 -91 2309 104 0 0 chrX 145921250 145921557 -16678373 - AluSc SINE Alu -2 307 1 5793 165 18 22 chrX 145921557 145921649 -16678281 + L1MA6 LINE L1 6209 6300 0 351 267 75 33 chrX 145921715 145921835 -16678095 + HAL1 LINE L1 1228 1352 -1155 22 0 0 0 chrX 145921909 145921931 -16677999 + AT_rich Low_complexity Low_complexity 1 22 0 248 264 8 33 chrX 145922354 145922475 -16677455 + L1MDa LINE L1 2442 2559 -3981 666 229 0 8 chrX 145922540 145922671 -16677259 + MER58B DNA MER1_type 203 332 -9 232 359 45 6 chrX 145922913 145923069 -16676861 + L1MDa LINE L1 2821 2982 -3558 2104 118 0 16 chrX 145923143 145923449 -16676481 - AluSq SINE Alu -12 301 1 612 317 9 5 chrX 145923490 145923711 -16676219 + L1ME4a LINE L1 5570 5791 -330 302 200 145 41 chrX 145924380 145924525 -16675405 + L1ME4a LINE L1 5959 6118 -3 195 321 0 0 chrX 145925149 145925202 -16674728 + MIR3 SINE MIR 117 169 -39 24 0 0 0 chrX 145925921 145925945 -16673985 + AT_rich Low_complexity Low_complexity 1 24 0 946 294 74 32 chrX 145926857 145927289 -16672641 + LTR16A LTR ERVL 1 450 0 300 323 40 8 chrX 145927354 145927478 -16672452 + L1MEd LINE L1 32 159 -5960 941 293 45 63 chrX 145927594 145927872 -16672058 + MLT1I LTR MaLR 1 271 -138 2073 89 0 77 chrX 145927872 145928185 -16671745 + AluSx SINE Alu 1 289 -23 941 293 45 63 chrX 145928185 145928302 -16671628 + MLT1I LTR MaLR 271 389 -20 297 339 8 8 chrX 145928393 145928511 -16671419 - LTR67 LTR ERVL -6 551 434 289 305 102 47 chrX 145928970 145929226 -16670704 - MLT1L LTR MaLR 0 615 346 490 249 36 67 chrX 145929345 145929538 -16670392 - MLT1L LTR MaLR -415 200 14 1575 103 0 5 chrX 145929785 145929999 -16669931 + AluSc SINE Alu 80 292 -17 520 241 0 0 chrX 145930988 145931100 -16668830 - MLT2B2 LTR ERVL -403 112 1 668 275 56 104 chrX 145931191 145931364 -16668566 - L2 LINE L2 -29 3284 3104 2168 105 3 0 chrX 145931364 145931659 -16668271 + AluSp SINE Alu 1 296 -17 668 275 56 104 chrX 145931659 145932049 -16667881 - L2 LINE L2 -209 3104 2754 395 242 36 67 chrX 145932087 145932281 -16667649 - LTR37B LTR ERV1 -77 391 204 473 353 16 16 chrX 145932538 145932557 -16667373 - L2 LINE L2 -561 2753 2735 2474 173 42 5 chrX 145932557 145932967 -16666963 + MSTB LTR MaLR 2 426 0 473 353 16 16 chrX 145932967 145933199 -16666731 - L2 LINE L2 -578 2736 2502 1652 259 91 35 chrX 145933451 145934110 -16665820 + L2 LINE L2 1592 2287 -1027 23 78 0 0 chrX 145934110 145934161 -16665769 + AT_rich Low_complexity Low_complexity 1 51 0 2316 89 3 26 chrX 145934164 145934477 -16665453 + AluY SINE Alu 1 306 -5 4718 143 19 42 chrX 145934477 145934968 -16664962 + L1PB4 LINE L1 5322 5823 -333 486 49 0 0 chrX 145934968 145935029 -16664901 + (TG)n Simple_repeat Simple_repeat 2 62 0 4718 143 19 42 chrX 145935029 145935066 -16664864 + L1PB4 LINE L1 5823 5859 -297 2237 89 17 7 chrX 145935066 145935368 -16664562 + AluSq SINE Alu 1 305 -8 4718 143 19 42 chrX 145935368 145935686 -16664244 + L1PB4 LINE L1 5859 6149 -7 1192 236 36 33 chrX 145935777 145936111 -16663819 + MLT1A1 LTR MaLR 10 344 -21 214 213 67 40 chrX 145936123 145936198 -16663732 - MIR SINE MIR -25 237 161 626 71 24 12 chrX 145936200 145936285 -16663645 - THE1A LTR MaLR 0 355 270 2199 68 18 7 chrX 145936285 145936565 -16663365 + AluSq SINE Alu 1 283 -30 232 237 0 0 chrX 145936591 145936650 -16663280 - L1MCa LINE L1 -4362 2064 2006 198 0 0 0 chrX 145936650 145936672 -16663258 + (CA)n Simple_repeat Simple_repeat 1 22 0 1589 255 133 30 chrX 145936673 145937426 -16662504 + L2 LINE L2 2452 3313 0 2254 82 7 0 chrX 145937691 145937983 -16661947 - AluSc SINE Alu -15 294 1 605 56 0 0 chrX 145939344 145939416 -16660514 + Alu SINE Alu 229 300 -9 23 33 0 0 chrX 145939676 145939706 -16660224 + AT_rich Low_complexity Low_complexity 1 30 0 807 213 0 44 chrX 145939876 145939916 -16660014 - MER58B DNA MER1_type -2079 341 301 2226 94 0 3 chrX 145939916 145940214 -16659716 + AluY SINE Alu 1 297 -14 807 213 0 44 chrX 145940214 145940356 -16659574 - MER58B DNA MER1_type -2119 301 167 1688 167 3 37 chrX 145940399 145940698 -16659232 + AluJb SINE Alu 5 293 -19 227 31 31 0 chrX 145940738 145940770 -16659160 + (CA)n Simple_repeat Simple_repeat 2 34 0 262 248 48 9 chrX 145940961 145941066 -16658864 + L1MB1 LINE L1 3205 3313 -2833 1664 84 0 9 chrX 145941066 145941292 -16658638 + LTR17 LTR ERV1 3 226 -554 232 225 83 58 chrX 145941292 145941412 -16658518 + LTR25 LTR ERV1 595 717 -77 1694 161 62 0 chrX 145941615 145941937 -16657993 + LTR17 LTR ERV1 367 708 -72 2472 267 68 56 chrX 145941962 145942020 -16657910 + L1MB1 LINE L1 3305 3361 -2785 2234 103 3 0 chrX 145942020 145942320 -16657610 + AluSq SINE Alu 1 301 -12 2472 267 68 56 chrX 145942320 145942793 -16657137 + L1MB1 LINE L1 3361 3827 -2319 2556 199 82 15 chrX 145942793 145943320 -16656610 - MER68 LTR ERV1 0 562 1 2472 267 68 56 chrX 145943320 145944105 -16655825 + L1MB1 LINE L1 3827 4638 -1508 495 213 41 25 chrX 145944106 145944228 -16655702 + L1M1 LINE L1 22 145 -7420 636 131 0 10 chrX 145944228 145944327 -16655603 + MER4A LTR ERV1 1 98 -566 1861 111 3 72 chrX 145944327 145944553 -16655377 + MER4A LTR ERV1 261 512 -152 2218 99 0 7 chrX 145944553 145944857 -16655073 + AluSg SINE Alu 1 302 -8 1861 111 3 72 chrX 145944857 145945001 -16654929 + MER4A LTR ERV1 512 664 0 3551 214 28 38 chrX 145945001 145945283 -16654647 + L1M1 LINE L1 143 426 -7139 4132 89 15 6 chrX 145945283 145945832 -16654098 - MER41A LTR ERV1 0 554 1 3551 214 28 38 chrX 145945832 145946017 -16653913 + L1M1 LINE L1 426 611 -6954 2057 126 19 7 chrX 145946017 145946326 -16653604 - AluSq SINE Alu 0 313 1 3551 214 28 38 chrX 145946326 145946642 -16653288 + L1M1 LINE L1 611 919 -6646 1245 185 27 36 chrX 145946640 145947371 -16652559 + L1MB1 LINE L1 5104 5962 -206 * 2498 72 0 0 chrX 145947371 145947677 -16652253 + AluSc SINE Alu 1 306 -3 1245 185 27 36 chrX 145947677 145947718 -16652212 + L1MB1 LINE L1 5962 6002 -166 1219 196 44 47 chrX 145948014 145948374 -16651556 - L1MB7 LINE L1 -48 6130 5767 1071 121 18 0 chrX 145948365 145948530 -16651400 - L1MB1 LINE L1 -17 6172 6005 * 559 351 50 7 chrX 145948558 145948840 -16651090 + LTR16C LTR ERVL 160 453 -38 239 217 0 0 chrX 145948954 145949000 -16650930 + (CA)n Simple_repeat Simple_repeat 2 47 0 2213 103 0 3 chrX 145949166 145949456 -16650474 + AluSx SINE Alu 1 289 -23 2620 81 3 8 chrX 145949603 145949960 -16649970 - THE1A LTR MaLR 0 355 1 417 294 108 31 chrX 145950444 145950965 -16648965 - L1M4 LINE L1 -2410 3736 3176 328 343 89 14 chrX 145950967 145951180 -16648750 - L1M4 LINE L1 -3013 3133 2905 1681 289 26 41 chrX 145951270 145951759 -16648171 - HAL1 LINE L1 -521 1986 1512 2104 95 14 0 chrX 145951759 145952044 -16647886 - AluSp SINE Alu -24 289 1 1681 289 26 41 chrX 145952044 145952336 -16647594 - HAL1 LINE L1 -995 1512 1217 248 250 105 0 chrX 145952613 145952689 -16647241 - L2 LINE L2 -50 3222 3139 2345 89 0 0 chrX 145952720 145953013 -16646917 + AluY SINE Alu 1 293 -18 263 293 41 82 chrX 145953304 145953451 -16646479 - L2 LINE L2 -263 3009 2869 328 118 26 92 chrX 145953495 145953571 -16646359 + AluSq SINE Alu 1 71 -232 1824 105 4 0 chrX 145953581 145953828 -16646102 + AluSq SINE Alu 53 300 -13 2305 88 3 10 chrX 145953832 145954139 -16645791 + AluSp SINE Alu 3 307 -6 581 257 22 56 chrX 145954505 145954684 -16645246 + MER5B DNA MER1_type 5 177 -1 27 22 0 22 chrX 145954776 145954787 -16645143 + AT_rich Low_complexity Low_complexity 1 11 -33 2278 93 0 0 chrX 145954787 145955076 -16644854 - AluSg SINE Alu -21 289 1 27 22 0 22 chrX 145955076 145955109 -16644821 + AT_rich Low_complexity Low_complexity 11 44 0 1429 162 3 63 chrX 145955116 145955400 -16644530 + AluJb SINE Alu 6 272 -40 414 0 0 0 chrX 145955404 145955450 -16644480 + (TA)n Simple_repeat Simple_repeat 1 46 0 280 302 103 8 chrX 145955956 145956082 -16643848 - L2 LINE L2 -4 3309 3172 183 428 22 6 chrX 145956313 145956493 -16643437 - L2 LINE L2 -625 2689 2507 483 305 130 52 chrX 145956561 145957302 -16642628 - L2 LINE L2 -6 3307 1592 199 271 34 51 chrX 145957821 145957880 -16642050 + L3 LINE CR1 1516 1573 -4 224 279 16 0 chrX 145959075 145959136 -16640794 + L2 LINE L2 3246 3307 -6 818 290 75 9 chrX 145959684 145960005 -16639925 + MER93a LTR ERV1 61 402 0 620 203 28 87 chrX 145960026 145960394 -16639536 + Charlie2 DNA MER1_type 1856 2244 -618 2477 61 3 0 chrX 145960394 145960691 -16639239 - AluSp SINE Alu -15 298 1 620 203 28 87 chrX 145960691 145960739 -16639191 + Charlie2 DNA MER1_type 2244 2293 -569 246 250 52 17 chrX 145960809 145960925 -16639005 + L1ME4a LINE L1 5980 6099 -22 4095 53 4 0 chrX 145962237 145962748 -16637182 + LTR10D LTR ERV1 1 513 0 1708 291 102 34 chrX 145962845 145963155 -16636775 - L2 LINE L2 -1177 2137 1849 2141 108 0 44 chrX 145963155 145963471 -16636459 - AluY SINE Alu -9 302 1 1708 291 102 34 chrX 145963471 145964064 -16635866 - L2 LINE L2 -1465 1849 1173 821 268 16 0 chrX 145964815 145965009 -16634921 + MIR SINE MIR 1 197 -65 251 316 26 0 chrX 145965015 145965091 -16634839 + MIR SINE MIR 64 141 -67 2296 74 0 51 chrX 145965299 145965610 -16634320 + AluSg SINE Alu 1 295 -15 2566 10 0 0 chrX 145965928 145966218 -16633712 + L1PA5 LINE L1 5858 6147 -7 288 0 0 0 chrX 145966566 145966598 -16633332 + (CA)n Simple_repeat Simple_repeat 1 32 0 293 326 31 8 chrX 145967518 145967647 -16632283 - MIR SINE MIR -70 192 61 24 41 0 20 chrX 145967811 145967823 -16632107 + AT_rich Low_complexity Low_complexity 1 12 -36 1501 158 14 14 chrX 145967823 145968115 -16631815 + L1MA8 LINE L1 5998 6289 -2 24 41 0 20 chrX 145968115 145968151 -16631779 + AT_rich Low_complexity Low_complexity 12 48 0 2549 206 63 31 chrX 145968196 145968784 -16631146 - MER90 LTR ERV1 -7 607 1 301 195 195 8 chrX 145969018 145969136 -16630794 + L1MC/D LINE L1 5293 5432 -746 233 297 116 22 chrX 145969213 145969445 -16630485 + L1MC/D LINE L1 5554 5807 -2001 238 245 21 11 chrX 145969558 145969569 -16630361 + (TA)n Simple_repeat Simple_repeat 1 10 -85 1593 173 0 62 chrX 145969569 145969875 -16630055 + AluJb SINE Alu 1 287 -25 238 245 21 11 chrX 145969875 145969957 -16629973 + (TA)n Simple_repeat Simple_repeat 10 95 0 32 57 0 0 chrX 145970094 145970147 -16629783 + AT_rich Low_complexity Low_complexity 1 53 0 2425 86 3 0 chrX 145970147 145970448 -16629482 - AluSp SINE Alu -11 302 1 2486 266 38 48 chrX 145970472 145970700 -16629230 + L1MEc LINE L1 46 275 -6121 2032 108 0 10 chrX 145970700 145971021 -16628909 + AluSc SINE Alu 1 309 0 2486 266 38 48 chrX 145971021 145971685 -16628245 + L1MEc LINE L1 275 928 -5468 2266 88 10 0 chrX 145971685 145971982 -16627948 + AluY SINE Alu 1 300 -11 2486 266 38 48 chrX 145971982 145972165 -16627765 + L1MEc LINE L1 928 1111 -5285 1766 224 60 7 chrX 145972174 145972611 -16627319 + MLT1C LTR MaLR 4 463 -4 3413 253 51 24 chrX 145972669 145973411 -16626519 + L1MEc LINE L1 2373 3094 -3121 2081 117 0 0 chrX 145973411 145973685 -16626245 + AluSx SINE Alu 1 274 -38 3413 253 51 24 chrX 145973685 145974542 -16625388 + L1MEc LINE L1 3094 4014 -2201 21 0 0 0 chrX 145974542 145974563 -16625367 + AT_rich Low_complexity Low_complexity 1 21 0 6257 11 1 0 chrX 145974563 145975304 -16624626 - L1HS LINE L1 0 6155 5414 993 0 0 0 chrX 145975306 145975413 -16624517 - U6 snRNA snRNA 0 107 1 1263 245 66 16 chrX 145975414 145975974 -16623956 + L1MEc LINE L1 4003 4590 -1625 1532 235 55 41 chrX 145976068 145976673 -16623257 + L1MEc LINE L1 4595 5207 -1008 1024 220 67 86 chrX 145976674 145977046 -16622884 - MLT1A1 LTR MaLR 0 365 1 3259 216 16 17 chrX 145977046 145977739 -16622191 - MLT1A1-int LTR MaLR 0 1735 1044 263 149 0 0 chrX 145977725 145977772 -16622158 - MLT1A1-int LTR MaLR -573 1162 1116 * 1762 137 74 49 chrX 145977774 145977938 -16621992 + THE1C LTR MaLR 1 159 -216 2589 113 0 16 chrX 145977938 145978319 -16621611 + THE1C LTR MaLR 1 375 0 1762 137 74 49 chrX 145978319 145978520 -16621410 + THE1C LTR MaLR 159 375 0 5009 179 22 46 chrX 145978520 145979613 -16620317 - MLT1A1-int LTR MaLR -668 1067 1 389 263 194 0 chrX 145979613 145979773 -16620157 - MLT1A1 LTR MaLR 0 374 184 711 277 200 19 chrX 145979805 145980170 -16619760 + L2 LINE L2 2880 3310 -3 2949 6 0 0 chrX 145980428 145980746 -16619184 + AluYb8 SINE Alu 1 318 0 209 111 0 74 chrX 145980958 145981012 -16618918 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 2159 109 10 10 chrX 145981118 145981421 -16618509 + AluSg SINE Alu 1 303 -7 1691 169 34 14 chrX 145981570 145981866 -16618064 - AluJb SINE Alu -10 302 1 28 71 0 0 chrX 145981933 145981989 -16617941 + AT_rich Low_complexity Low_complexity 1 56 0 2155 131 0 3 chrX 145982564 145982861 -16617069 + AluSg SINE Alu 1 296 -14 330 325 77 0 chrX 145983117 145983234 -16616696 - MIR3 SINE MIR -49 159 34 400 321 113 38 chrX 145983784 145984102 -16615828 + L3 LINE CR1 715 1056 -521 * 557 286 56 17 chrX 145984071 145984249 -16615681 + MIR SINE MIR 57 241 -21 189 0 0 0 chrX 145984256 145984277 -16615653 + (TTA)n Simple_repeat Simple_repeat 2 22 0 885 338 102 27 chrX 145984309 145984759 -16615171 + L3 LINE CR1 1093 1576 -1 2310 92 3 0 chrX 145985024 145985341 -16614589 + AluSp SINE Alu 1 318 0 2332 100 0 3 chrX 145985394 145985695 -16614235 + AluSx SINE Alu 1 300 -12 332 305 107 25 chrX 145985785 145985982 -16613948 + L1MD2 LINE L1 5673 5885 -474 26 30 0 0 chrX 145986213 145986246 -16613684 + AT_rich Low_complexity Low_complexity 1 33 0 1974 125 0 55 chrX 145986249 145986576 -16613354 + AluSg SINE Alu 1 309 -1 2373 94 0 0 chrX 145986603 145986911 -16613019 + AluSg1 SINE Alu 1 308 -1 360 309 56 16 chrX 145986913 145987039 -16612891 - MIR3 SINE MIR -23 185 55 272 319 94 29 chrX 145987038 145987176 -16612754 + MIR3 SINE MIR 6 152 -56 * 283 313 62 0 chrX 145987177 145987321 -16612609 - MLT1K LTR MaLR -4 584 432 2592 34 0 3 chrX 145987591 145987889 -16612041 + AluY SINE Alu 1 297 -14 2261 115 3 0 chrX 145988299 145988603 -16611327 - AluSg SINE Alu -5 305 1 207 0 0 0 chrX 145988762 145988785 -16611145 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2230 104 0 0 chrX 145988787 145989076 -16610854 - AluSx SINE Alu -23 289 1 1284 134 0 11 chrX 145989302 145989489 -16610441 - AluSg/x SINE Alu -11 299 115 21 0 0 0 chrX 145989531 145989552 -16610378 + AT_rich Low_complexity Low_complexity 1 21 0 295 287 21 46 chrX 145989762 145989916 -16610014 - MIR SINE MIR -63 145 50 300 306 14 0 chrX 145990104 145990176 -16609754 + L2 LINE L2 3224 3296 -17 25 31 0 0 chrX 145990176 145990208 -16609722 + AT_rich Low_complexity Low_complexity 1 32 0 334 256 64 103 chrX 145990360 145990563 -16609367 + MIR SINE MIR 68 262 0 2413 70 0 13 chrX 145990831 145991133 -16608797 - AluSq SINE Alu -15 298 1 2159 123 7 0 chrX 145992453 145992753 -16607177 + AluSp SINE Alu 1 302 -11 716 331 8 8 chrX 145993467 145993715 -16606215 + MIR SINE MIR 2 249 -13 267 133 0 0 chrX 145994053 145994098 -16605832 + (TA)n Simple_repeat Simple_repeat 2 46 0 617 336 39 0 chrX 145994301 145994509 -16605421 - MIR SINE MIR -29 233 18 2119 123 0 17 chrX 145994683 145994985 -16604945 - AluSx SINE Alu -15 297 1 1883 221 54 35 chrX 145994987 145995720 -16604210 + L1MC3 LINE L1 5079 5401 -745 2429 64 3 13 chrX 145995842 145996154 -16603776 + AluY SINE Alu 3 311 0 216 0 0 0 chrX 145996502 145996526 -16603404 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3567 189 14 35 chrX 145996526 145996573 -16603357 + L1MC3 LINE L1 5818 5864 -1921 986 57 0 0 chrX 145996573 145996696 -16603234 + L1PA11 LINE L1 6049 6171 -3 3567 189 14 35 chrX 145996696 145997453 -16602477 + L1MC3 LINE L1 5864 6605 -1180 486 49 49 0 chrX 145997453 145997534 -16602396 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 3567 189 14 35 chrX 145997534 145997595 -16602335 + L1MC3 LINE L1 6605 6666 -1119 260 239 28 0 chrX 145997732 145997803 -16602127 + L1ME LINE L1 5533 5605 -516 2468 68 16 10 chrX 145998163 145998473 -16601457 + AluSp SINE Alu 2 313 0 1323 269 45 42 chrX 145998735 145999241 -16600689 - REP3 LTR ERV -33 529 22 363 146 0 0 chrX 145999256 145999311 -16600619 - MER94 DNA DNA -78 56 2 559 309 65 47 chrX 145999558 145999943 -16599987 + L1MC/D LINE L1 4742 5133 -1013 201 205 0 0 chrX 145999984 146000023 -16599907 - MIR SINE MIR -127 135 97 1002 190 53 4 chrX 146000710 146000936 -16598994 + L1MA4 LINE L1 6029 6265 -35 237 359 0 0 chrX 146001009 146001073 -16598857 - MIR3 SINE MIR -25 183 120 275 232 205 9 chrX 146001229 146001341 -16598589 - MIR SINE MIR -1 261 128 302 278 14 0 chrX 146001346 146001418 -16598512 - REP3 LTR ERV -489 73 1 487 220 25 17 chrX 146001598 146001716 -16598214 - MIR SINE MIR -131 131 13 488 287 98 22 chrX 146001731 146002006 -16597924 + L1MC/D LINE L1 5429 5724 -2084 1297 242 58 19 chrX 146002037 146002415 -16597515 - LTR10C LTR ERV1 -40 593 188 2272 95 20 7 chrX 146002710 146003016 -16596914 + AluSg SINE Alu 1 310 0 311 333 11 0 chrX 146003027 146003117 -16596813 - MLT1L LTR MaLR -198 417 327 1620 127 0 0 chrX 146003701 146003922 -16596008 + AluSq SINE Alu 1 221 -92 5321 191 23 22 chrX 146003926 146004952 -16594978 - L1PA13 LINE L1 -3987 2810 1786 1957 155 0 19 chrX 146004952 146005261 -16594669 + AluJb SINE Alu 1 303 -9 2462 55 16 16 chrX 146005261 146005570 -16594360 + AluY SINE Alu 1 309 -2 5321 191 23 22 chrX 146005570 146005715 -16594215 - L1PA13 LINE L1 -5011 1786 1643 207 0 0 0 chrX 146005715 146005738 -16594192 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5321 191 23 22 chrX 146005738 146006067 -16593863 - L1PA13 LINE L1 -5154 1643 1285 352 287 0 100 chrX 146006242 146006503 -16593427 + L2 LINE L2 1634 1868 -1446 354 358 40 15 chrX 146006504 146006800 -16593130 + L2 LINE L2 1124 1482 -1832 970 294 23 26 chrX 146006801 146007151 -16592779 + L2 LINE L2 1788 2136 -1178 205 216 78 20 chrX 146007158 146007209 -16592721 + L2 LINE L2 3006 3059 -254 195 333 0 0 chrX 146007451 146007505 -16592425 - MER5A DNA MER1_type -129 60 7 194 224 82 0 chrX 146007551 146007600 -16592330 - L2 LINE L2 -6 3307 3255 1289 313 57 10 chrX 146008360 146009078 -16590852 - L2 LINE L2 -4 3309 2551 5197 258 97 42 chrX 146009084 146009342 -16590588 - L2 LINE L2 -1164 2150 1908 2358 146 7 40 chrX 146009342 146009745 -16590185 - MLT1B LTR MaLR 0 390 1 5197 258 97 42 chrX 146009745 146010986 -16588944 - L2 LINE L2 -1406 1908 737 2099 198 9 102 chrX 146010986 146011557 -16588373 - MLT2B1 LTR ERVL -2 518 1 5197 258 97 42 chrX 146011557 146011730 -16588200 - L2 LINE L2 -2577 737 575 2244 101 3 10 chrX 146011730 146012027 -16587903 + AluSq SINE Alu 1 295 -18 5197 258 97 42 chrX 146012027 146012249 -16587681 - L2 LINE L2 -2739 575 150 1972 174 130 47 chrX 146012522 146012933 -16586997 + LTR10A LTR ERV1 1 463 -146 2378 96 7 0 chrX 146012933 146013236 -16586694 - AluY SINE Alu -6 305 1 1972 174 130 47 chrX 146013236 146013330 -16586600 + LTR10A LTR ERV1 463 548 -61 2038 162 55 37 chrX 146013639 146014182 -16585748 + MLT2A2 LTR ERVL 1 554 0 830 215 10 36 chrX 146014196 146014391 -16585539 + MLT1D LTR MaLR 1 190 -315 2875 53 12 0 chrX 146014394 146014734 -16585196 + L1PA7 LINE L1 5811 6154 0 1937 144 3 10 chrX 146014929 146015221 -16584709 + AluJo SINE Alu 5 294 -18 648 257 44 11 chrX 146015401 146015584 -16584346 + MLT1D LTR MaLR 277 465 -2 525 297 101 10 chrX 146015689 146015898 -16584032 + MIR SINE MIR 31 258 -4 24 53 0 0 chrX 146016588 146016626 -16583304 + AT_rich Low_complexity Low_complexity 1 38 0 2385 89 0 0 chrX 146016674 146016977 -16582953 - AluSx SINE Alu -9 303 1 195 175 25 25 chrX 146017368 146017408 -16582522 - L2 LINE L2 -262 3051 3012 2141 98 11 0 chrX 146018210 146018486 -16581444 + AluSg SINE Alu 1 279 -31 509 357 24 36 chrX 146018722 146019137 -16580793 - L2 LINE L2 0 3313 2904 335 293 73 8 chrX 146019170 146019293 -16580637 + MIR SINE MIR 68 198 -64 2248 88 37 0 chrX 146019477 146019773 -16580157 - AluSq SINE Alu -6 307 1 493 297 85 38 chrX 146019824 146020164 -16579766 + L1MC4a LINE L1 3588 3943 -2203 1441 291 80 22 chrX 146020499 146021917 -16578013 + L1MC4a LINE L1 4411 5395 -751 * 6862 195 45 31 chrX 146021915 146024466 -16575464 + L1MB7 LINE L1 3616 6184 0 182 97 0 0 chrX 146024539 146024570 -16575360 - L3 LINE CR1 0 1577 1547 227 356 0 10 chrX 146024605 146024706 -16575224 - MIR3 SINE MIR -19 189 90 315 0 0 0 chrX 146025620 146025655 -16574275 + (CA)n Simple_repeat Simple_repeat 2 36 0 1684 96 0 9 chrX 146026255 146026473 -16573457 - AluSg/x SINE Alu -20 290 75 271 285 65 32 chrX 146026957 146027080 -16572850 + HAL1b LINE L1 336 462 -886 257 228 81 19 chrX 146027516 146027705 -16572225 + L1M LINE L1 5134 5343 -803 898 256 63 37 chrX 146027712 146028201 -16571729 + L1MC5 LINE L1 7411 7912 -49 2301 149 86 10 chrX 146028694 146029090 -16570840 + MSTA LTR MaLR 3 428 0 2312 80 6 22 chrX 146029222 146029536 -16570394 + AluSg SINE Alu 1 309 -1 2235 118 0 0 chrX 146029916 146030221 -16569709 + AluSg SINE Alu 1 305 -5 267 57 75 0 chrX 146030227 146030280 -16569650 + A-rich Low_complexity Low_complexity 4 60 0 340 276 67 9 chrX 146031866 146031971 -16567959 - MIR SINE MIR 0 262 152 357 364 14 28 chrX 146032797 146033014 -16566916 + HERV16 LTR ERVL 1229 1442 -3554 180 77 0 0 chrX 146033879 146033905 -16566025 + (TCG)n Simple_repeat Simple_repeat 2 27 0 346 287 167 68 chrX 146034143 146034568 -16565362 - L1M2 LINE L1 -5541 1308 842 261 0 0 0 chrX 146035026 146035055 -16564875 + (CA)n Simple_repeat Simple_repeat 2 30 0 1008 298 129 22 chrX 146035280 146035467 -16564463 + L2 LINE L2 2514 2680 -633 2357 68 3 0 chrX 146035467 146035763 -16564167 + AluY SINE Alu 1 297 -14 1008 298 129 22 chrX 146035763 146036285 -16563645 + L2 LINE L2 2680 3308 -5 2219 108 10 0 chrX 146036374 146036681 -16563249 + AluSp SINE Alu 1 310 -3 2506 78 3 0 chrX 146037235 146037542 -16562388 - AluSp SINE Alu -5 308 1 1170 269 61 66 chrX 146039475 146039891 -16560039 + MLT1H1 LTR MaLR 1 415 -140 207 0 0 0 chrX 146039891 146039914 -16560016 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1170 269 61 66 chrX 146039914 146040055 -16559875 + MLT1H1 LTR MaLR 415 555 0 296 146 21 0 chrX 146040141 146040189 -16559741 + MER74B LTR ERVL 5 53 -569 1134 251 69 33 chrX 146040224 146040615 -16559315 + MER74B LTR ERVL 211 615 -7 303 319 24 25 chrX 146040910 146041049 -16558881 + MIR SINE MIR 51 189 -65 186 103 0 0 chrX 146041388 146041417 -16558513 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chrX 146041560 146041581 -16558349 + (TA)n Simple_repeat Simple_repeat 2 22 0 969 58 0 8 chrX 146041581 146041690 -16558240 - L1PA5 LINE L1 -9 6145 6036 7106 156 21 18 chrX 146042011 146042249 -16557681 - L1MA3 LINE L1 0 7724 7488 2334 106 0 0 chrX 146042249 146042550 -16557380 - AluSx SINE Alu -11 301 1 7106 156 21 18 chrX 146042550 146043590 -16556340 - L1MA3 LINE L1 -236 7488 6452 2293 111 0 3 chrX 146043590 146043887 -16556043 - AluSx SINE Alu -14 298 3 7106 156 21 18 chrX 146043887 146045047 -16554883 - L1MA3 LINE L1 -1272 6452 5277 1410 93 14 23 chrX 146045050 146045265 -16554665 - pTR5 LTR ERV1 -2054 384 172 359 235 10 0 chrX 146045268 146045366 -16554564 - LTR30 LTR ERV1 -80 642 544 4250 126 91 78 chrX 146045370 146046334 -16553596 - pTR5 LTR ERV1 -417 2021 741 7298 211 22 1 chrX 146046336 146047944 -16551986 - L1MA3 LINE L1 -2284 5281 3641 902 83 91 0 chrX 146047974 146048095 -16551835 - AluSg SINE Alu -178 132 1 1039 101 0 0 chrX 146048141 146048270 -16551660 - AluSp SINE Alu -184 129 1 1865 124 11 34 chrX 146048272 146048626 -16551304 - L1MA3 LINE L1 -3933 3632 3287 733 223 90 87 chrX 146049233 146049328 -16550602 - L1MC4 LINE L1 -3 8039 7946 2327 76 38 0 chrX 146049328 146049619 -16550311 - AluY SINE Alu -9 302 1 733 223 90 87 chrX 146049619 146049944 -16549986 - L1MC4 LINE L1 -96 7946 7623 2677 124 3 3 chrX 146049944 146050308 -16549622 + THE1B LTR MaLR 1 364 0 9822 104 49 49 chrX 146050308 146051889 -16548041 + THE1B-int LTR MaLR 1 1580 0 2307 137 8 11 chrX 146051890 146052254 -16547676 + THE1B LTR MaLR 2 364 0 733 223 90 87 chrX 146052254 146052429 -16547501 - L1MC4 LINE L1 -419 7623 7451 1565 88 0 15 chrX 146052429 146052634 -16547296 + AluY SINE Alu 98 299 -12 733 223 90 87 chrX 146052634 146052771 -16547159 - L1MC4 LINE L1 -591 7451 7316 1294 218 7 58 chrX 146052787 146053199 -16546731 - L1MC4 LINE L1 -904 7138 6748 311 263 105 26 chrX 146053217 146053331 -16546599 + L1MC2 LINE L1 4918 5040 -1106 2134 104 4 0 chrX 146053411 146053681 -16546249 + AluSx SINE Alu 1 271 -41 207 69 0 0 chrX 146053691 146053720 -16546210 + (CAA)n Simple_repeat Simple_repeat 2 30 0 14512 152 14 1 chrX 146053756 146056309 -16543621 - HERVK3 LTR ERVK -4578 2665 41 2631 139 0 20 chrX 146056309 146056747 -16543183 - LTR3 LTR ERVK 0 429 1 35 63 0 0 chrX 146056859 146056922 -16543008 + AT_rich Low_complexity Low_complexity 1 63 0 1178 181 79 4 chrX 146056952 146057217 -16542713 + L1MC2 LINE L1 5566 5850 -494 2007 201 33 0 chrX 146057221 146057618 -16542312 - MSTB LTR MaLR 0 426 17 1608 158 152 17 chrX 146057619 146057883 -16542047 + MSTA LTR MaLR 1 328 -100 2534 66 0 0 chrX 146057883 146058184 -16541746 + AluY SINE Alu 1 301 -10 1608 158 152 17 chrX 146058184 146058281 -16541649 + MSTA LTR MaLR 328 411 -17 8432 187 35 2 chrX 146058296 146059895 -16540035 + MSTA-int LTR MaLR 1 1651 0 1772 148 128 55 chrX 146059895 146060252 -16539678 + MSTA LTR MaLR 1 391 -37 2461 91 0 0 chrX 146060252 146060559 -16539371 - AluSg SINE Alu -3 307 1 1772 148 128 55 chrX 146060559 146060599 -16539331 + MSTA LTR MaLR 391 427 -1 8564 187 19 11 chrX 146060621 146062258 -16537672 - MSTB-int LTR MaLR 0 1651 2 2432 159 29 7 chrX 146062260 146062676 -16537254 - MSTB LTR MaLR -1 425 1 2404 145 37 17 chrX 146062713 146062886 -16537044 + L1MC2 LINE L1 5865 6033 -311 2178 136 0 0 chrX 146062886 146063196 -16536734 - AluSq SINE Alu -3 310 1 2404 145 37 17 chrX 146063196 146063484 -16536446 + L1MC2 LINE L1 6033 6335 -9 1541 228 130 28 chrX 146063487 146063773 -16536157 + L1ME2 LINE L1 5290 5546 -618 2190 106 0 7 chrX 146063773 146064066 -16535864 - AluSx SINE Alu 0 312 22 1541 228 130 28 chrX 146064066 146064524 -16535406 + L1ME2 LINE L1 5546 6156 -8 1604 170 19 77 chrX 146064821 146065198 -16534732 + MLT1B LTR MaLR 28 382 -8 1538 203 40 19 chrX 146065209 146065588 -16534342 + Tigger6 DNA MER2_type 51 437 -646 1016 186 20 0 chrX 146065584 146065788 -16534142 + Tigger6 DNA MER2_type 1077 1284 -313 * 394 265 54 41 chrX 146065904 146066051 -16533879 - MLT2E LTR ERVL -434 194 46 1393 265 97 27 chrX 146066108 146066513 -16533417 + MLT1E2 LTR MaLR 1 462 -164 2123 107 7 0 chrX 146066513 146066828 -16533102 + AluSp SINE Alu 1 317 0 1393 265 97 27 chrX 146066828 146067006 -16532924 + MLT1E2 LTR MaLR 462 626 0 270 296 0 30 chrX 146067069 146067201 -16532729 + HAL1b LINE L1 683 810 -538 5845 85 20 11 chrX 146067872 146068755 -16531175 - L1PA10 LINE L1 0 6168 5278 357 370 27 11 chrX 146068758 146068942 -16530988 + L1M4 LINE L1 2388 2574 -3572 3501 219 26 15 chrX 146069121 146070320 -16529610 + L1MB8 LINE L1 4936 6150 -28 1204 284 71 36 chrX 146070371 146070864 -16529066 + MLT2F LTR ERVL 128 637 -26 291 244 73 0 chrX 146071338 146071420 -16528510 - MIR SINE MIR -70 192 105 2423 74 0 3 chrX 146072770 146073067 -16526863 + AluSq SINE Alu 1 296 -17 1623 155 76 3 chrX 146073073 146073364 -16526566 - L1PA16 LINE L1 -17 6149 5838 2368 102 0 0 chrX 146074494 146074799 -16525131 + AluSx SINE Alu 1 305 -7 267 292 0 14 chrX 146075140 146075212 -16524718 + MIR3 SINE MIR 90 160 -48 221 237 13 53 chrX 146075212 146075288 -16524642 - MER5B DNA MER1_type 0 178 106 641 306 76 37 chrX 146075407 146076162 -16523768 - L1MDa LINE L1 -2640 3900 3075 3073 43 5 0 chrX 146076162 146076538 -16523392 - L1PA7 LINE L1 0 6154 5777 641 306 76 37 chrX 146076538 146077030 -16522900 - L1MDa LINE L1 -3465 3075 2604 326 334 84 33 chrX 146077624 146077854 -16522076 - L1MDa LINE L1 -861 2040 1732 1054 31 0 0 chrX 146077859 146077989 -16521941 + L1PA4 LINE L1 6024 6153 -2 505 278 62 104 chrX 146078142 146078671 -16521259 - L1MDa LINE L1 -5553 977 471 342 354 125 24 chrX 146078816 146079152 -16520778 - L2 LINE L2 -345 2969 2600 266 0 0 29 chrX 146079669 146079704 -16520226 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 415 247 52 5 chrX 146080607 146080801 -16519129 - Zaphod DNA AcHobo -550 3481 3279 21423 51 4 2 chrX 146080884 146084428 -16515502 - L1PA7 LINE L1 0 6154 2607 12159 59 2 1 chrX 146084428 146086086 -16513844 + L1PA7 LINE L1 936 2596 -3550 6548 184 17 24 chrX 146086076 146088588 -16511342 + L1M1 LINE L1 2262 4755 -2810 * 4814 92 10 7 chrX 146088652 146089361 -16510569 - LTR19-int LTR ERV1 -52 5534 4824 * 17566 94 54 46 chrX 146089360 146092495 -16507435 - LTR19-int LTR ERV1 -967 4619 1462 1742 98 8 4 chrX 146092495 146092731 -16507199 + AluSq SINE Alu 1 237 -76 244 192 19 0 chrX 146093031 146093083 -16506847 - L2 LINE L2 0 3313 3261 2124 129 3 0 chrX 146093220 146093529 -16506401 + AluSg SINE Alu 1 310 0 651 259 84 65 chrX 146093571 146093834 -16506096 - L2 LINE L2 -339 2975 2708 386 174 0 12 chrX 146094019 146094105 -16505825 + CT-rich Low_complexity Low_complexity 3 87 0 2146 109 3 13 chrX 146094332 146094643 -16505287 - AluSx SINE Alu -4 308 1 1255 204 35 15 chrX 146095353 146095696 -16504234 - L1MA8 LINE L1 -5 6286 5937 4053 128 14 2 chrX 146095713 146096351 -16503579 - L1PA15 LINE L1 -5 6160 5515 3129 220 37 39 chrX 146096352 146097217 -16502713 - L1M1 LINE L1 -6690 875 13 189 0 0 0 chrX 146098627 146098648 -16501282 + (TTCCC)n Simple_repeat Simple_repeat 1 21 0 2798 122 29 7 chrX 146099153 146099603 -16500327 + LTR46 LTR ERV1 1 460 0 2266 99 3 3 chrX 146100415 146100709 -16499221 - AluSg1 SINE Alu -15 294 1 4775 144 76 50 chrX 146100709 146101759 -16498171 - MER4A-int LTR ERV1 -1569 5029 4008 1661 114 144 4 chrX 146101759 146102022 -16497908 + AluSx SINE Alu 1 300 -2 4775 144 76 50 chrX 146102022 146102393 -16497537 - MER4A-int LTR ERV1 -2590 4008 3648 1995 134 0 13 chrX 146102393 146102692 -16497238 - AluSx SINE Alu -15 297 3 4775 144 76 50 chrX 146102692 146103203 -16496727 - MER4A-int LTR ERV1 -2950 3648 3152 183 42 0 0 chrX 146103203 146103227 -16496703 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4775 144 76 50 chrX 146103227 146103393 -16496537 - MER4A-int LTR ERV1 -3446 3152 1488 4464 161 71 16 chrX 146103389 146104427 -16495503 - MER4A-int LTR ERV1 -4304 2294 1200 * 1755 147 71 26 chrX 146104584 146104966 -16494964 + LTR10E LTR ERV1 214 612 -21 2263 128 123 60 chrX 146104972 146106036 -16493894 - MER4A-int LTR ERV1 -5416 1182 2 721 115 0 0 chrX 146106040 146106139 -16493791 - MER4A LTR ERV1 0 664 566 4199 139 80 5 chrX 146106139 146106873 -16493057 + LTR1B LTR ERV1 1 789 -37 19900 82 13 8 chrX 146106873 146108889 -16491041 - L1P LINE L1 -822 5324 3287 2068 142 0 0 chrX 146108889 146109192 -16490738 - AluSx SINE Alu -9 303 1 19900 82 13 8 chrX 146109192 146110162 -16489768 - L1P LINE L1 -2859 3287 2323 2028 141 0 0 chrX 146110162 146110466 -16489464 - AluSx SINE Alu -8 304 1 1868 149 46 32 chrX 146112774 146113144 -16486786 + THE1C LTR MaLR 1 375 0 2009 123 0 33 chrX 146113441 146113613 -16486317 - AluSx SINE Alu -20 292 133 180 0 0 0 chrX 146113613 146113633 -16486297 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2009 123 0 33 chrX 146113633 146113762 -16486168 - AluSx SINE Alu -179 133 1 2841 253 48 67 chrX 146113780 146114792 -16485138 - L2 LINE L2 -538 2776 1784 2225 99 7 3 chrX 146114898 146115200 -16484730 - AluSp SINE Alu -9 304 2 6664 44 6 1 chrX 146118450 146119311 -16480619 - L1PA7 LINE L1 -10 6144 5280 * 8696 83 2 6 chrX 146119309 146120570 -16479360 + L1PA7 LINE L1 4034 5289 -857 264 234 0 0 chrX 146120935 146120999 -16478931 + T-rich Low_complexity Low_complexity 1 64 0 351 0 0 0 chrX 146122148 146122187 -16477743 + (TG)n Simple_repeat Simple_repeat 2 40 0 393 131 60 0 chrX 146122221 146122305 -16477625 - L1ME4a LINE L1 -236 5885 5797 1748 81 0 14 chrX 146122427 146122650 -16477280 - AluSg/x SINE Alu -21 289 70 259 59 0 0 chrX 146122650 146122684 -16477246 + Alu SINE Alu 26 59 -244 322 296 103 33 chrX 146122707 146122920 -16477010 + L1ME LINE L1 4195 4422 -1724 252 0 0 0 chrX 146122925 146122953 -16476977 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2241 87 0 0 chrX 146122953 146123228 -16476702 - AluSx SINE Alu -37 275 1 246 277 73 38 chrX 146123750 146123890 -16476040 + L1ME LINE L1 4595 4729 -1417 246 32 0 0 chrX 146123890 146123921 -16476009 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 7689 21 0 0 chrX 146123923 146125094 -16474836 - L1PA3 LINE L1 -1 6154 4988 246 277 73 38 chrX 146125094 146125184 -16474746 + L1ME LINE L1 4729 4836 -1310 324 347 40 20 chrX 146125395 146125643 -16474287 + L1ME LINE L1 5043 5295 -851 292 300 54 57 chrX 146125680 146126013 -16473917 + L1ME LINE L1 5319 5650 -471 399 220 0 50 chrX 146126687 146126787 -16473143 - L2 LINE L2 0 3313 3219 1208 268 126 30 chrX 146126918 146127481 -16472449 - L2 LINE L2 0 3313 2708 2905 133 28 4 chrX 146127508 146128005 -16471925 - L1MA9 LINE L1 0 6312 5804 314 307 30 10 chrX 146128069 146128170 -16471760 + L1MC4 LINE L1 6614 6716 -1326 342 0 0 0 chrX 146128210 146128248 -16471682 + (TA)n Simple_repeat Simple_repeat 1 38 0 1833 158 12 0 chrX 146128277 146128607 -16471323 - L1M2 LINE L1 -498 5793 5460 1689 125 13 0 chrX 146128609 146128914 -16471016 + L1 LINE L1 4198 4506 -1640 1644 125 11 84 chrX 146128922 146129299 -16470631 - MER4A LTR ERV1 0 664 257 395 180 90 0 chrX 146129295 146129384 -16470546 - MER4A LTR ERV1 -566 98 2 * 550 213 0 0 chrX 146129386 146129508 -16470422 + L1 LINE L1 4533 4654 -1492 488 304 114 0 chrX 146129512 146129670 -16470260 - L2 LINE L2 -619 2695 2520 719 315 43 18 chrX 146129670 146130067 -16469863 - MER68 LTR ERV1 0 562 156 896 245 60 28 chrX 146130231 146130549 -16469381 - L2 LINE L2 -1351 1963 1636 2036 121 161 11 chrX 146130564 146130936 -16468994 - MSTA LTR MaLR 0 428 1 2360 93 0 13 chrX 146130957 146131270 -16468660 + AluSc SINE Alu 1 309 0 2571 124 5 1 chrX 146131299 146131903 -16468027 - THE1C-int LTR MaLR -934 646 1 1894 156 64 22 chrX 146131903 146132263 -16467667 - THE1C LTR MaLR 0 375 1 322 303 0 32 chrX 146132270 146132455 -16467475 + (CA)n Simple_repeat Simple_repeat 2 180 0 363 307 0 0 chrX 146132489 146132639 -16467291 + (CA)n Simple_repeat Simple_repeat 1 150 0 357 296 191 5 chrX 146132668 146132888 -16467042 - L2 LINE L2 -40 3273 3013 * 878 286 37 67 chrX 146132875 146133365 -16466565 - L2 LINE L2 -576 2738 2264 589 241 102 16 chrX 146133388 146133575 -16466355 - L2 LINE L2 0 3313 3111 189 254 63 16 chrX 146133597 146133660 -16466270 - MIR SINE MIR -73 189 124 778 351 22 47 chrX 146135071 146135433 -16464497 - L2 LINE L2 -5 3267 2915 693 183 92 13 chrX 146135649 146135802 -16464128 + MER20 DNA MER1_type 29 193 -26 207 69 0 0 chrX 146135864 146135893 -16464037 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 180 275 176 33 chrX 146136128 146136219 -16463711 - MIR SINE MIR -111 151 48 188 139 70 23 chrX 146136255 146136298 -16463632 + L2 LINE L2 363 407 -2907 610 153 97 11 chrX 146136959 146137103 -16462827 - MIR3 SINE MIR -7 201 39 204 277 39 84 chrX 146137486 146137641 -16462289 + MIR SINE MIR 2 149 -113 1066 253 55 66 chrX 146137816 146138099 -16461831 - L1M4 LINE L1 -788 5358 5082 2248 109 0 6 chrX 146138099 146138411 -16461519 - AluSx SINE Alu -2 310 1 1066 253 55 66 chrX 146138411 146138656 -16461274 - L1M4 LINE L1 -1064 5082 4836 369 308 110 28 chrX 146138891 146139073 -16460857 - MIR SINE MIR -55 207 11 882 250 58 12 chrX 146139188 146139428 -16460502 - MIR SINE MIR 0 262 12 2099 107 7 3 chrX 146139448 146139747 -16460183 - AluSx SINE Alu -12 300 1 443 310 25 44 chrX 146140166 146140324 -16459606 - MIR SINE MIR -70 192 38 31 76 0 0 chrX 146140925 146140991 -16458939 + AT_rich Low_complexity Low_complexity 1 66 0 256 289 0 12 chrX 146141225 146141308 -16458622 + L2 LINE L2 3186 3267 -5 25991 35 1 8 chrX 146141666 146145854 -16454076 - L1PA4 LINE L1 -1 6154 1994 363 365 58 19 chrX 146146556 146146868 -16453062 - L3b LINE CR1 -115 1468 1145 186 43 0 0 chrX 146147012 146147035 -16452895 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 336 48 0 0 chrX 146147074 146147116 -16452814 + (TG)n Simple_repeat Simple_repeat 2 43 0 388 264 86 0 chrX 146147760 146147900 -16452030 + L1MA10 LINE L1 6180 6331 -3 2020 167 13 32 chrX 146148175 146148464 -16451466 - MLT1A1 LTR MaLR 0 365 83 1963 103 4 4 chrX 146148464 146148725 -16451205 - AluSc SINE Alu -12 297 37 2020 167 13 32 chrX 146148725 146148807 -16451123 - MLT1A1 LTR MaLR -282 83 1 525 284 93 13 chrX 146149284 146149720 -16450210 + LTR33 LTR ERVL 1 514 -7 2547 65 0 0 chrX 146149793 146150102 -16449828 - AluY SINE Alu -2 309 1 270 342 0 0 chrX 146150165 146150241 -16449689 + L2 LINE L2 3188 3263 -9 761 265 92 36 chrX 146150358 146150747 -16449183 + L1ME LINE L1 5389 5799 -322 1973 91 0 11 chrX 146150775 146151039 -16448891 + AluY SINE Alu 23 283 -28 233 25 75 0 chrX 146151039 146151079 -16448851 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1513 134 77 107 chrX 146151163 146151565 -16448365 + MLT1B LTR MaLR 1 390 0 4275 214 52 13 chrX 146151775 146152707 -16447223 + L1M1 LINE L1 14 981 -6584 618 103 9 95 chrX 146152707 146152823 -16447107 - THE1C LTR MaLR -269 106 1 4747 114 1 6 chrX 146152823 146153499 -16446431 - THE1C-int LTR MaLR 0 1580 908 6937 120 9 9 chrX 146153504 146155289 -16444641 + L1MA1 LINE L1 4515 6298 -4 363 284 12 0 chrX 146156240 146156321 -16443609 + MER5A DNA MER1_type 108 189 0 315 366 34 17 chrX 146156327 146156502 -16443428 + L2 LINE L2 2679 2856 -458 279 130 0 0 chrX 146156654 146156708 -16443222 + (CA)n Simple_repeat Simple_repeat 1 54 0 216 236 73 0 chrX 146157267 146157322 -16442608 + L2 LINE L2 3255 3313 0 308 294 34 14 chrX 146158059 146158205 -16441725 - L2 LINE L2 -237 3035 2887 1824 121 4 0 chrX 146158553 146158802 -16441128 - AluSg SINE Alu -12 298 49 238 334 93 77 chrX 146159843 146160154 -16439776 + L2 LINE L2 2949 3264 -8 1775 71 4 0 chrX 146160619 146160844 -16439086 - AluSc SINE Alu -1 308 83 3935 124 81 17 chrX 146161603 146162310 -16437620 - Tigger3(Golem) DNA MER2_type 0 3029 2278 681 164 0 0 chrX 146162305 146162409 -16437521 - Tigger3(Golem) DNA MER2_type -2925 104 1 * 23 0 0 0 chrX 146162766 146162789 -16437141 + AT_rich Low_complexity Low_complexity 1 23 0 3577 156 49 71 chrX 146163394 146164197 -16435733 + LTR1 LTR ERV1 1 785 0 13845 145 28 23 chrX 146165059 146165156 -16434774 - Tigger1 DNA MER2_type -4 2414 2319 2363 136 6 3 chrX 146165156 146165517 -16434413 - THE1B LTR MaLR -2 362 1 13845 145 28 23 chrX 146165517 146166249 -16433681 - Tigger1 DNA MER2_type -99 2319 1592 2222 113 0 3 chrX 146166249 146166550 -16433380 - AluSg SINE Alu -10 300 1 13845 145 28 23 chrX 146166550 146168120 -16431810 - Tigger1 DNA MER2_type -826 1592 1 1788 166 3 10 chrX 146168258 146168547 -16431383 + AluJb SINE Alu 1 287 -25 432 0 0 0 chrX 146168548 146168596 -16431334 + (TA)n Simple_repeat Simple_repeat 1 48 0 23 0 0 0 chrX 146168836 146168859 -16431071 + AT_rich Low_complexity Low_complexity 1 23 0 2223 66 0 53 chrX 146168954 146169255 -16430675 + AluSg1 SINE Alu 7 291 -18 338 269 67 22 chrX 146169291 146169425 -16430505 + L1 LINE L1 3095 3234 -2912 2230 105 0 0 chrX 146169717 146170028 -16429902 + AluSq SINE Alu 1 311 0 196 359 63 38 chrX 146170170 146170329 -16429601 + L2 LINE L2 1603 1765 -1549 782 204 58 70 chrX 146170360 146170688 -16429242 - MER33 DNA MER1_type 0 324 1 310 308 177 5 chrX 146170741 146170939 -16428991 + L2 LINE L2 1913 2144 -1170 416 240 164 14 chrX 146171016 146171162 -16428768 + MER5A DNA MER1_type 1 168 -21 2371 87 3 0 chrX 146171173 146171471 -16428459 + AluSp SINE Alu 5 303 -10 187 246 174 0 chrX 146171775 146171844 -16428086 + L2 LINE L2 3187 3267 -5 319 286 0 54 chrX 146171849 146171961 -16427969 + MIR SINE MIR 87 192 -70 6510 136 8 46 chrX 146172716 146174702 -16425228 - L1PA11 LINE L1 -3 6171 4212 440 285 54 0 chrX 146175272 146175402 -16424528 + MIR SINE MIR 54 190 -72 386 310 26 0 chrX 146177974 146178087 -16421843 - MIR3 SINE MIR -46 162 47 2865 44 22 0 chrX 146178333 146178693 -16421237 + L1PA7 LINE L1 5787 6154 0 387 358 23 12 chrX 146178898 146179071 -16420859 - L2 LINE L2 -201 3071 2897 239 200 123 15 chrX 146179358 146179423 -16420507 - L2 LINE L2 -18 3295 3224 * 240 305 19 38 chrX 146179417 146179522 -16420408 + MER5A DNA MER1_type 87 189 0 6666 139 35 27 chrX 146179835 146179909 -16420021 - Tigger3b DNA MER2_type -1797 1231 1159 2377 78 0 7 chrX 146179909 146180217 -16419713 - AluY SINE Alu -5 306 1 6666 139 35 27 chrX 146180217 146181023 -16418907 - Tigger3b DNA MER2_type -1869 1159 336 2364 93 6 0 chrX 146181023 146181334 -16418596 - AluSp SINE Alu 0 313 1 6666 139 35 27 chrX 146181334 146181672 -16418258 - Tigger3b DNA MER2_type -2692 336 2 210 304 0 0 chrX 146181807 146181863 -16418067 + (CA)n Simple_repeat Simple_repeat 1 56 0 881 205 30 17 chrX 146182206 146182440 -16417490 - L1 LINE L1 -3689 2457 2221 218 256 34 8 chrX 146182442 146182559 -16417371 + (TA)n Simple_repeat Simple_repeat 2 121 0 2691 220 34 31 chrX 146182559 146183299 -16416631 + L1MA7 LINE L1 2447 3188 -2958 2776 206 12 0 chrX 146183317 146183885 -16416045 + L1MA7 LINE L1 3775 4349 -1797 3859 214 31 0 chrX 146184011 146184716 -16415214 + L1PA13 LINE L1 1 727 -6060 8010 168 27 3 chrX 146184717 146186953 -16412977 + L1PA13 LINE L1 4550 6810 -4 5328 164 18 13 chrX 146186965 146188769 -16411161 + L1MA7 LINE L1 4351 6162 -129 597 288 94 14 chrX 146189154 146189366 -16410564 - MIR SINE MIR 0 262 34 204 40 0 0 chrX 146189572 146189597 -16410333 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 357 57 7 chrX 146189612 146189752 -16410178 - L2 LINE L2 -206 3066 2920 2602 30 0 3 chrX 146189771 146190072 -16409858 + AluY SINE Alu 1 300 -11 279 262 40 117 chrX 146190090 146190388 -16409542 - L2 LINE L2 -6 3307 3033 209 147 0 0 chrX 146191082 146191116 -16408814 - L2 LINE L2 -12 3301 3268 * 474 293 36 12 chrX 146191114 146191281 -16408649 - MIR SINE MIR -77 185 15 1780 186 11 30 chrX 146191474 146191840 -16408090 + MLT1A1 LTR MaLR 4 362 -3 282 95 0 0 chrX 146191840 146191882 -16408048 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chrX 146192391 146192412 -16407518 + AT_rich Low_complexity Low_complexity 1 21 0 2370 243 50 22 chrX 146193272 146194187 -16405743 + L1ME1 LINE L1 2407 3347 -2799 5473 159 50 7 chrX 146194222 146195323 -16404607 - L1MA9 LINE L1 -3 6309 5159 268 102 34 102 chrX 146195306 146195365 -16404565 - L1MA9 LINE L1 -234 6078 6024 * 3215 205 10 17 chrX 146195380 146196152 -16403778 - L1MA9 LINE L1 -2845 3301 2535 888 226 17 17 chrX 146196159 146196393 -16403537 + L1ME1 LINE L1 5318 5551 -615 882 207 47 0 chrX 146196389 146196582 -16403348 + L1 LINE L1 3616 3817 -2329 * 1664 276 26 18 chrX 146196581 146197187 -16402743 + L1ME1 LINE L1 5549 6159 -7 2394 262 39 47 chrX 146197303 146198180 -16401750 + L1ME3A LINE L1 5280 6149 -21 749 270 37 106 chrX 146199374 146199829 -16400101 - L2 LINE L2 -17 3296 2873 739 232 107 23 chrX 146199845 146200265 -16399665 - MLT1C LTR MaLR -10 457 1 2511 59 7 0 chrX 146200279 146200585 -16399345 + AluY SINE Alu 1 308 -3 246 246 55 64 chrX 146200589 146200699 -16399231 - L2 LINE L2 -455 2859 2751 204 97 0 0 chrX 146200829 146200860 -16399070 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 1352 85 0 0 chrX 146200860 146201036 -16398894 - L1PA8 LINE L1 -24 6148 5973 394 385 50 8 chrX 146201329 146201568 -16398362 - L2 LINE L2 -497 2817 2569 665 296 77 5 chrX 146202101 146202297 -16397633 - MIR SINE MIR -7 255 46 16266 165 6 7 chrX 146203698 146207552 -16392378 + L1PA11 LINE L1 2327 6211 0 234 91 0 0 chrX 146207848 146207881 -16392049 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2702 101 3 5 chrX 146208766 146209142 -16390788 - THE1C LTR MaLR 0 375 1 948 326 75 34 chrX 146209244 146209825 -16390105 + L2 LINE L2 2696 3292 -21 31 26 0 0 chrX 146210033 146210071 -16389859 + AT_rich Low_complexity Low_complexity 1 38 0 539 14 0 55 chrX 146211299 146211372 -16388558 - L1PA3 LINE L1 -223 5932 5864 1787 35 4 13 chrX 146211372 146211587 -16388343 + L1PA3 LINE L1 5928 6152 -3 25 0 0 0 chrX 146211587 146211612 -16388318 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chrX 146212141 146212176 -16387754 + (CA)n Simple_repeat Simple_repeat 1 35 0 2281 52 42 11 chrX 146212194 146212480 -16387450 - AluY SINE Alu -16 295 1 2089 118 4 0 chrX 146213249 146213556 -16386374 + AluSx SINE Alu 1 308 0 248 143 14 129 chrX 146213588 146213658 -16386272 - MER103 DNA DNA -33 133 72 7809 13 0 0 chrX 146213742 146215416 -16384514 - L1PA3 LINE L1 -2 6153 4476 188 327 0 0 chrX 146215939 146215994 -16383936 + L2 LINE L2 3216 3270 -2 2273 89 3 3 chrX 146216213 146216515 -16383415 - AluSp SINE Alu -11 302 1 2559 308 75 48 chrX 146218024 146218253 -16381677 + L1MEc LINE L1 11 232 -6164 2392 127 5 19 chrX 146218253 146218622 -16381308 - THE1B LTR MaLR 0 364 1 11636 104 2 0 chrX 146218622 146220198 -16379732 - THE1B-int LTR MaLR 0 1580 1 2266 140 8 27 chrX 146220198 146220569 -16379361 - THE1B LTR MaLR 0 364 1 2559 308 75 48 chrX 146220569 146222619 -16377311 + L1MEc LINE L1 231 2353 -4043 610 363 44 0 chrX 146222619 146222845 -16377085 + LTR16B LTR ERVL 1 236 -228 425 281 66 33 chrX 146222866 146223201 -16376729 + L1MDa LINE L1 2061 2406 -4134 25396 133 10 9 chrX 146223221 146223417 -16376513 + L1PA8A LINE L1 1066 1260 -4871 2215 96 7 20 chrX 146223417 146223720 -16376210 + AluSg SINE Alu 1 299 -11 25396 133 10 9 chrX 146223720 146225760 -16374170 + L1PA8A LINE L1 1260 3297 -2834 2815 13 0 0 chrX 146225760 146226068 -16373862 + AluYa5 SINE Alu 1 308 -3 25396 133 10 9 chrX 146226068 146228877 -16371053 + L1PA8A LINE L1 3297 6113 -18 1837 307 87 27 chrX 146230566 146231175 -16368755 - L2 LINE L2 -357 2957 2279 2207 122 14 8 chrX 146231175 146231528 -16368402 + THE1A LTR MaLR 1 355 0 1837 307 87 27 chrX 146231528 146231782 -16368148 - L2 LINE L2 -1035 2279 2042 642 264 14 110 chrX 146231797 146232161 -16367769 - L2 LINE L2 -1530 1784 1456 275 295 157 12 chrX 146232989 146233155 -16366775 - MIR3 SINE MIR -7 201 12 252 240 0 40 chrX 146233739 146233814 -16366116 - MIR SINE MIR -50 212 141 2044 291 65 68 chrX 146234174 146235545 -16364385 + L1MA7 LINE L1 1 1247 -5034 * 6996 192 27 9 chrX 146235541 146237254 -16362676 + L1MA7 LINE L1 1477 4844 -1506 1783 191 36 23 chrX 146237225 146237352 -16362578 + L1PB2 LINE L1 4054 4178 -2172 * 2101 108 3 13 chrX 146237352 146237657 -16362273 + AluSx SINE Alu 2 303 -9 1783 191 36 23 chrX 146237657 146237917 -16362013 + L1PB2 LINE L1 4178 4446 -1904 6094 155 7 14 chrX 146238383 146240309 -16359621 + L1PB2 LINE L1 4233 6147 -4 5328 173 32 12 chrX 146240313 146241960 -16357970 + L1MA7 LINE L1 4804 6489 -6 5295 180 27 7 chrX 146242219 146244110 -16355820 - L1PA16 LINE L1 -22 6144 4221 549 298 68 79 chrX 146244273 146244740 -16355190 + L2 LINE L2 2852 3313 0 260 369 36 18 chrX 146244754 146244865 -16355065 + L2 LINE L2 3136 3248 -24 242 370 62 26 chrX 146246133 146246325 -16353605 - MIR SINE MIR -44 218 20 239 344 80 16 chrX 146246715 146246840 -16353090 - MIR SINE MIR -109 153 21 24 32 0 0 chrX 146246955 146246986 -16352944 + AT_rich Low_complexity Low_complexity 1 31 0 5517 162 47 4 chrX 146247887 146249163 -16350767 - L1PA15 LINE L1 -9 6156 4810 1255 275 42 13 chrX 146249147 146249456 -16350474 - L1PA13 LINE L1 -5296 1491 1174 * 180 313 78 0 chrX 146249698 146249762 -16350168 + L2 LINE L2 2903 2971 -301 3042 256 44 31 chrX 146249803 146250261 -16349669 - L1MD2 LINE L1 -222 6137 5687 1827 218 67 45 chrX 146250261 146250752 -16349178 + MLT1D LTR MaLR 1 502 -3 3042 256 44 31 chrX 146250752 146251968 -16347962 - L1MD2 LINE L1 -672 5687 4436 804 228 53 0 chrX 146251969 146252175 -16347755 + L1M4 LINE L1 3653 3869 -2277 335 217 12 0 chrX 146252176 146252259 -16347671 + L1M2 LINE L1 5540 5623 -689 774 119 87 0 chrX 146252353 146252479 -16347451 - LTR7 LTR ERV1 -313 137 1 3546 109 11 32 chrX 146252479 146253048 -16346882 - HERVH LTR ERV1 0 7713 7157 616 180 33 0 chrX 146253041 146253163 -16346767 - HERVH LTR ERV1 -1697 6016 5891 * 432 242 38 8 chrX 146253180 146253312 -16346618 - L1M4 LINE L1 -810 5336 5201 1409 181 37 0 chrX 146253312 146253583 -16346347 - L1MD1 LINE L1 0 6242 5962 506 196 0 0 chrX 146254383 146254475 -16345455 - MLT1I LTR MaLR -2 407 316 12468 198 23 37 chrX 146255294 146258937 -16340993 - L1PA13 LINE L1 -1786 5011 1534 3361 78 14 0 chrX 146258937 146258978 -16340952 - MLT2A1 LTR ERVL -2 442 403 1116 133 0 0 chrX 146258978 146259158 -16340772 + (TA)n Simple_repeat Simple_repeat 1 180 0 3361 78 14 0 chrX 146259158 146259552 -16340378 - MLT2A1 LTR ERVL -41 403 1 12468 198 23 37 chrX 146259552 146261064 -16338866 - L1PA13 LINE L1 -5263 1534 2 304 333 67 19 chrX 146261292 146261397 -16338533 - L2 LINE L2 -5 3267 3158 995 213 24 110 chrX 146261484 146261883 -16338047 - MLT1A1 LTR MaLR 0 457 1 1401 188 18 115 chrX 146261883 146262266 -16337664 + MLT1A1 LTR MaLR 20 365 0 302 279 44 70 chrX 146262452 146262610 -16337320 - MIR SINE MIR -60 202 49 626 244 156 7 chrX 146262732 146262921 -16337009 - MIR SINE MIR -10 252 49 186 43 0 0 chrX 146263214 146263237 -16336693 + (TC)n Simple_repeat Simple_repeat 2 24 0 333 262 116 30 chrX 146264077 146264241 -16335689 - MIR3 SINE MIR -10 198 21 27 0 0 0 chrX 146265253 146265280 -16334650 + AT_rich Low_complexity Low_complexity 1 27 0 345 326 0 48 chrX 146265640 146265767 -16334163 + MIR SINE MIR 28 147 -74 338 299 10 0 chrX 146266488 146266585 -16333345 + GA-rich Low_complexity Low_complexity 2 99 0 839 262 94 45 chrX 146267225 146267487 -16332443 - MLT1J LTR MaLR 0 511 224 2111 101 24 3 chrX 146267487 146267785 -16332145 + AluSx SINE Alu 1 304 -8 839 262 94 45 chrX 146267785 146267896 -16332034 - MLT1J LTR MaLR -287 224 120 246 330 80 0 chrX 146267994 146268082 -16331848 - MLT1J LTR MaLR -416 95 1 312 309 29 50 chrX 146268285 146268424 -16331506 - MIR SINE MIR -74 134 26 626 271 37 5 chrX 146268963 146269151 -16330779 - MIR SINE MIR -4 258 65 391 298 84 0 chrX 146270783 146270914 -16329016 - MIR3 SINE MIR -37 171 30 21 36 0 0 chrX 146271098 146271126 -16328804 + AT_rich Low_complexity Low_complexity 1 28 0 2226 96 7 7 chrX 146271492 146271785 -16328145 - AluSp SINE Alu -20 293 1 932 304 13 19 chrX 146272173 146272486 -16327444 + L1MEc LINE L1 45 355 -6041 * 3019 244 125 44 chrX 146272481 146274153 -16325777 + L1MB5 LINE L1 382 2184 -4775 634 209 52 0 chrX 146274202 146274317 -16325613 + FLAM_C SINE Alu 1 121 -22 1094 171 120 21 chrX 146274317 146274551 -16325379 + MSTA LTR MaLR 172 428 0 3145 180 20 3 chrX 146274551 146274794 -16325136 + L1MB1 LINE L1 5541 5778 -390 300 53 0 0 chrX 146274794 146274832 -16325098 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 3145 180 20 3 chrX 146274832 146275182 -16324748 + L1MB1 LINE L1 5778 6144 -24 367 306 33 33 chrX 146275205 146275388 -16324542 + L1MB5 LINE L1 2781 2963 -4175 2087 130 0 3 chrX 146275390 146275683 -16324247 + AluSp SINE Alu 20 311 -2 284 272 0 11 chrX 146275711 146275803 -16324127 + L1MB5 LINE L1 2929 3019 -3938 * 4244 230 51 73 chrX 146275794 146276314 -16323616 + L1MB5 LINE L1 3959 4489 -2496 2005 138 3 7 chrX 146276314 146276636 -16323294 + AluSq SINE Alu 1 313 0 4244 230 51 73 chrX 146276636 146277184 -16322746 + L1MB5 LINE L1 4489 5048 -1937 812 217 0 22 chrX 146277184 146277364 -16322566 + FRAM SINE Alu 1 176 0 4244 230 51 73 chrX 146277364 146279213 -16320717 + L1MB5 LINE L1 5048 6977 -8 2392 93 0 0 chrX 146279936 146280246 -16319684 + AluSg SINE Alu 1 310 0 2741 236 66 49 chrX 146280525 146281318 -16318612 - MER21B LTR ERV1 -57 806 1 1845 142 7 26 chrX 146281495 146281797 -16318133 - AluJo SINE Alu -16 296 1 234 273 0 0 chrX 146282451 146282506 -16317424 + L2 LINE L2 3209 3263 -9 7561 198 60 116 chrX 146283245 146283360 -16316570 - Charlie1 DNA MER1_type -31 2730 2610 2449 29 0 4 chrX 146283360 146283639 -16316291 + AluY SINE Alu 23 300 -11 7561 198 60 116 chrX 146283639 146286415 -16313515 - Charlie1 DNA MER1_type -151 2610 1 393 292 0 10 chrX 146286505 146286614 -16313316 - MLT1J2 LTR MaLR -281 169 71 3761 132 34 0 chrX 146288143 146288755 -16311175 - LTR24C LTR ERV1 0 635 3 1739 154 3 24 chrX 146288856 146289149 -16310781 - AluJb SINE Alu -14 298 12 6156 136 13 8 chrX 146289177 146290736 -16309194 - L1PB1 LINE L1 -2 6149 4584 225 65 0 0 chrX 146291109 146291140 -16308790 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 276 30 0 0 chrX 146291139 146291172 -16308758 + (TA)n Simple_repeat Simple_repeat 1 33 0 294 327 44 16 chrX 146291140 146291411 -16308519 + L1M4 LINE L1 4338 4586 -1560 21 36 0 0 chrX 146291609 146291637 -16308293 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chrX 146291755 146291793 -16308137 + (CA)n Simple_repeat Simple_repeat 2 39 0 294 29 0 0 chrX 146291802 146291837 -16308093 + (TG)n Simple_repeat Simple_repeat 2 36 0 2301 95 0 3 chrX 146291923 146292218 -16307712 + AluSc SINE Alu 1 294 -15 1523 102 0 0 chrX 146292481 146292706 -16307224 - L1MA1 LINE L1 -1 6301 6077 2271 91 10 3 chrX 146294016 146294325 -16305605 + AluSq SINE Alu 1 311 -2 471 308 21 54 chrX 146294399 146294639 -16305291 + L1ME LINE L1 145 376 -5829 542 331 69 28 chrX 146294739 146295069 -16304861 + L1ME LINE L1 1860 2208 -4188 387 0 0 0 chrX 146295069 146295112 -16304818 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 542 331 69 28 chrX 146295112 146295143 -16304787 + L1ME LINE L1 2208 2236 -4160 2170 155 27 12 chrX 146295144 146295359 -16304571 - MLT1B LTR MaLR 0 390 164 2167 121 7 0 chrX 146295359 146295664 -16304266 - AluSx SINE Alu -5 307 1 2170 155 27 12 chrX 146295664 146295831 -16304099 - MLT1B LTR MaLR -226 164 1 1274 269 85 28 chrX 146295832 146296580 -16303350 + L1ME LINE L1 2706 3505 -2710 2355 84 13 0 chrX 146296580 146296878 -16303052 + AluSg SINE Alu 1 302 -8 1274 269 85 28 chrX 146296878 146296939 -16302991 + L1ME LINE L1 3505 3561 -2654 5064 133 24 20 chrX 146297129 146298254 -16301676 - L1PA15 LINE L1 -8 6157 5003 2583 158 7 0 chrX 146298254 146298685 -16301245 + MER57B LTR ERV1 1 434 0 5064 133 24 20 chrX 146298685 146299378 -16300552 - L1PA15 LINE L1 -1162 5003 4315 697 46 11 0 chrX 146299380 146299467 -16300463 + L1PA5 LINE L1 11 98 -6048 * 30487 57 1 8 chrX 146299465 146305042 -16294888 + L1PA5 LINE L1 623 6153 -1 4373 166 11 13 chrX 146305032 146305518 -16294412 + L1PB4 LINE L1 5297 5782 -374 * 2079 68 15 0 chrX 146305518 146305783 -16294147 + AluY SINE Alu 34 302 -9 4373 166 11 13 chrX 146305783 146306157 -16293773 + L1PB4 LINE L1 5782 6155 -1 765 181 6 51 chrX 146306185 146306362 -16293568 + L1MB5 LINE L1 5993 6161 -13 428 325 43 27 chrX 146306399 146306587 -16293343 + MIR SINE MIR 49 239 -23 281 301 24 57 chrX 146307142 146307265 -16292665 - L2 LINE L2 -15 3298 3180 641 262 32 16 chrX 146307510 146307784 -16292146 + L1ME LINE L1 820 1137 -5074 303 250 147 45 chrX 146308142 146308298 -16291632 - MIR SINE MIR -54 208 37 228 232 18 18 chrX 146309793 146309849 -16290081 - L2 LINE L2 -16 3256 3201 396 242 40 0 chrX 146309849 146309948 -16289982 + MLT1J LTR MaLR 6 108 -403 25 31 0 0 chrX 146310231 146310263 -16289667 + AT_rich Low_complexity Low_complexity 1 32 0 2231 126 0 0 chrX 146310933 146311243 -16288687 + AluSg SINE Alu 1 310 0 524 286 0 7 chrX 146312089 146312236 -16287694 + MLT1H LTR MaLR 115 260 -289 353 370 8 8 chrX 146312520 146312647 -16287283 - MIR3 SINE MIR -77 131 5 436 312 138 23 chrX 146312853 146313071 -16286859 + MIR SINE MIR 14 256 -6 198 103 0 0 chrX 146313138 146313167 -16286763 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1678 166 143 13 chrX 146313292 146313671 -16286259 - MSTA LTR MaLR 0 428 1 198 103 0 0 chrX 146314098 146314127 -16285803 + (TAA)n Simple_repeat Simple_repeat 3 31 0 524 290 0 0 chrX 146314129 146314260 -16285670 - MIR SINE MIR -8 254 124 9904 196 64 50 chrX 146314264 146314372 -16285558 - L1MCa LINE L1 -3603 2823 2718 1523 171 35 64 chrX 146314372 146314746 -16285184 - MLT1A1 LTR MaLR -2 363 1 9904 196 64 50 chrX 146314746 146314908 -16285022 - L1MCa LINE L1 -3708 2718 2560 2445 86 0 9 chrX 146314908 146315223 -16284707 - AluSq SINE Alu -1 312 1 9904 196 64 50 chrX 146315223 146316228 -16283702 - L1MCa LINE L1 -3866 2560 1570 2386 88 3 3 chrX 146316228 146316533 -16283397 + AluSx SINE Alu 1 305 -7 9904 196 64 50 chrX 146316533 146317273 -16282657 - L1MCa LINE L1 -4856 1570 842 2425 85 0 7 chrX 146317273 146317580 -16282350 - AluSc SINE Alu -2 307 3 9904 196 64 50 chrX 146317580 146318288 -16281642 - L1MCa LINE L1 -5584 842 21 187 316 111 34 chrX 146318292 146318409 -16281521 - MIR SINE MIR -135 127 2 281 282 17 33 chrX 146318440 146318619 -16281311 + MIR SINE MIR 9 254 -8 508 259 158 25 chrX 146318783 146318941 -16280989 + MER5A DNA MER1_type 4 182 -7 826 228 11 11 chrX 146318947 146319127 -16280803 + MIR SINE MIR 5 184 -78 2380 92 16 0 chrX 146320831 146321134 -16278796 + AluSg SINE Alu 1 308 -2 275 229 105 9 chrX 146321355 146321460 -16278470 + MER103 DNA DNA 3 117 -49 417 236 164 0 chrX 146321480 146321590 -16278340 - MER91C DNA MER1_type -7 133 6 373 250 196 16 chrX 146321798 146321982 -16277948 + MIR SINE MIR 20 236 -26 1006 184 51 0 chrX 146321984 146322180 -16277750 - MER46A DNA MER2_type 0 236 31 301 269 144 0 chrX 146322415 146322519 -16277411 + L2 LINE L2 3141 3259 -13 2236 107 0 7 chrX 146323664 146323972 -16275958 - AluSg1 SINE Alu -3 306 1 1929 275 46 45 chrX 146323977 146324636 -16275294 - L1MEc LINE L1 -5459 937 275 2022 112 0 10 chrX 146324636 146324957 -16274973 - AluSc SINE Alu 0 309 1 1929 275 46 45 chrX 146324957 146325183 -16274747 - L1MEc LINE L1 -6121 275 51 2434 77 3 0 chrX 146325212 146325511 -16274419 + AluSp SINE Alu 1 300 -13 32 57 0 0 chrX 146325511 146325564 -16274366 + AT_rich Low_complexity Low_complexity 1 53 0 229 247 21 11 chrX 146325701 146325783 -16274147 + (TA)n Simple_repeat Simple_repeat 1 86 -8 1653 169 0 50 chrX 146325783 146326085 -16273845 - AluJb SINE Alu -25 287 1 229 247 21 11 chrX 146326085 146326095 -16273835 + (TA)n Simple_repeat Simple_repeat 86 94 0 515 295 203 18 chrX 146326095 146326636 -16273294 - L1MC4a LINE L1 -1879 5929 5293 2556 206 63 31 chrX 146326870 146327458 -16272472 + MER90 LTR ERV1 1 607 -7 24 41 0 20 chrX 146327503 146327539 -16272391 + AT_rich Low_complexity Low_complexity 1 37 -11 1501 158 14 14 chrX 146327539 146327831 -16272099 - L1MA8 LINE L1 -2 6289 5998 24 41 0 20 chrX 146327831 146327843 -16272087 + AT_rich Low_complexity Low_complexity 37 48 0 273 341 31 8 chrX 146328007 146328136 -16271794 + MIR SINE MIR 61 192 -70 375 23 0 0 chrX 146329057 146329101 -16270829 + (TG)n Simple_repeat Simple_repeat 1 44 0 2566 10 0 0 chrX 146329449 146329739 -16270191 - L1PA5 LINE L1 -7 6147 5858 2286 74 0 52 chrX 146330057 146330367 -16269563 - AluSg SINE Alu -16 294 1 251 316 26 0 chrX 146330575 146330651 -16269279 - MIR SINE MIR -67 141 64 821 268 16 0 chrX 146330657 146330851 -16269079 - MIR SINE MIR -65 197 1 1683 293 102 34 chrX 146331602 146332195 -16267735 + L2 LINE L2 1173 1849 -1465 2180 108 0 43 chrX 146332195 146332519 -16267411 + AluY SINE Alu 1 310 -1 1683 293 102 34 chrX 146332519 146332829 -16267101 + L2 LINE L2 1849 2137 -1177 4136 49 4 0 chrX 146332926 146333437 -16266493 - LTR10D LTR ERV1 0 513 1 246 250 52 17 chrX 146334749 146334865 -16265065 - L1ME4a LINE L1 -22 6099 5980 589 204 28 92 chrX 146334935 146334983 -16264947 - Charlie2 DNA MER1_type -569 2293 2243 2479 64 3 0 chrX 146334983 146335281 -16264649 + AluSp SINE Alu 1 299 -14 589 204 28 92 chrX 146335281 146335651 -16264279 - Charlie2 DNA MER1_type -619 2243 1856 812 289 75 12 chrX 146335672 146335994 -16263936 - MER93a LTR ERV1 0 402 61 235 262 16 0 chrX 146336542 146336603 -16263327 - L2 LINE L2 -6 3307 3246 193 271 34 51 chrX 146337798 146337857 -16262073 - L3 LINE CR1 -4 1573 1516 471 317 126 16 chrX 146338376 146338748 -16261182 + L2 LINE L2 1592 2004 -1310 405 331 15 15 chrX 146338994 146339124 -16260806 + L2 LINE L2 3137 3266 -6 183 428 22 6 chrX 146339192 146339372 -16260558 + L2 LINE L2 2507 2689 -625 280 302 103 8 chrX 146339603 146339729 -16260201 + L2 LINE L2 3172 3309 -4 1429 162 3 63 chrX 146340253 146340537 -16259393 - AluJb SINE Alu -40 272 6 27 22 0 22 chrX 146340544 146340577 -16259353 + AT_rich Low_complexity Low_complexity 1 34 -10 2276 93 0 0 chrX 146340577 146340866 -16259064 + AluSg SINE Alu 1 289 -21 27 22 0 22 chrX 146340866 146340877 -16259053 + AT_rich Low_complexity Low_complexity 34 44 0 581 257 22 56 chrX 146340969 146341148 -16258782 - MER5B DNA MER1_type -1 177 5 2347 89 3 0 chrX 146341514 146341818 -16258112 - AluSp SINE Alu -6 307 3 1824 105 4 0 chrX 146341822 146342069 -16257861 - AluSq SINE Alu -13 300 53 328 118 26 92 chrX 146342079 146342155 -16257775 - AluSq SINE Alu -232 71 1 263 293 41 82 chrX 146342199 146342346 -16257584 + L2 LINE L2 2869 3009 -263 2334 92 0 0 chrX 146342637 146342930 -16257000 - AluY SINE Alu -18 293 1 248 250 105 0 chrX 146342961 146343037 -16256893 + L2 LINE L2 3139 3222 -50 1643 290 26 41 chrX 146343314 146343606 -16256324 + HAL1 LINE L1 1217 1512 -995 2104 95 14 0 chrX 146343606 146343891 -16256039 + AluSp SINE Alu 1 289 -24 1643 290 26 41 chrX 146343891 146344380 -16255550 + HAL1 LINE L1 1512 1986 -521 328 343 89 14 chrX 146344470 146344683 -16255247 + L1M4 LINE L1 2905 3133 -3013 389 298 108 31 chrX 146344685 146345206 -16254724 + L1M4 LINE L1 3176 3736 -2410 2620 81 3 8 chrX 146345690 146346047 -16253883 + THE1A LTR MaLR 1 355 0 2202 103 0 3 chrX 146346194 146346484 -16253446 - AluSx SINE Alu -23 289 1 239 217 0 0 chrX 146346650 146346696 -16253234 + (TG)n Simple_repeat Simple_repeat 2 47 0 494 352 34 8 chrX 146346856 146347092 -16252838 - LTR16C LTR ERVL -90 401 160 981 121 18 0 chrX 146347120 146347285 -16252645 + L1MB1 LINE L1 6005 6172 -17 1084 194 40 47 chrX 146347337 146347636 -16252294 + L1MB7 LINE L1 5838 6134 -50 1129 187 26 37 chrX 146347932 146347973 -16251957 - L1MB1 LINE L1 -166 7421 7381 2484 72 0 0 chrX 146347973 146348279 -16251651 - AluSc SINE Alu -3 306 1 1129 187 26 37 chrX 146348279 146349010 -16250920 - L1MB1 LINE L1 -206 7381 6523 * 3283 214 28 37 chrX 146349008 146349324 -16250606 - L1MB1 LINE L1 -6646 919 602 2065 124 19 7 chrX 146349324 146349631 -16250299 + AluSq SINE Alu 1 311 -2 3283 214 28 37 chrX 146349631 146349815 -16250115 - L1MB1 LINE L1 -6963 602 418 3828 86 15 6 chrX 146349815 146350364 -16249566 + MER41A LTR ERV1 1 554 0 3283 214 28 37 chrX 146350364 146350646 -16249284 - L1MB1 LINE L1 -7147 418 143 1716 111 3 72 chrX 146350646 146350790 -16249140 - MER4A LTR ERV1 0 664 512 2310 93 0 6 chrX 146350790 146351102 -16248828 - AluSg SINE Alu 0 310 1 1716 111 3 72 chrX 146351102 146351328 -16248602 - MER4A LTR ERV1 -152 512 261 590 131 0 10 chrX 146351328 146351427 -16248503 - MER4A LTR ERV1 -566 98 1 450 213 41 25 chrX 146351427 146351549 -16248381 - L1MB1 LINE L1 -7420 145 22 1953 268 68 56 chrX 146351550 146352335 -16247595 - L1M4 LINE L1 -1508 4638 3864 2325 199 82 15 chrX 146352335 146352862 -16247068 + MER68 LTR ERV1 1 562 0 1953 268 68 56 chrX 146352862 146353335 -16246595 - L1M4 LINE L1 -2282 3864 3361 2234 103 3 0 chrX 146353335 146353635 -16246295 - AluSq SINE Alu -12 301 1 1953 268 68 56 chrX 146353635 146353693 -16246237 - L1M4 LINE L1 -2785 3361 3305 1694 161 62 0 chrX 146353718 146354040 -16245890 - LTR17 LTR ERV1 -72 708 367 232 225 83 58 chrX 146354244 146354364 -16245566 - LTR25 LTR ERV1 -77 717 595 1664 84 0 9 chrX 146354364 146354590 -16245340 - LTR17 LTR ERV1 -554 226 3 262 248 48 9 chrX 146354590 146354695 -16245235 - L1M4 LINE L1 -2833 3313 3205 227 31 31 0 chrX 146354886 146354918 -16245012 + (TG)n Simple_repeat Simple_repeat 2 34 0 1688 167 3 37 chrX 146354958 146355257 -16244673 - AluJb SINE Alu -19 293 5 807 213 0 44 chrX 146355300 146355442 -16244488 + MER58B DNA MER1_type 167 301 -2119 2226 94 0 3 chrX 146355442 146355740 -16244190 - AluY SINE Alu -14 297 1 807 213 0 44 chrX 146355740 146355780 -16244150 + MER58B DNA MER1_type 301 341 0 23 33 0 0 chrX 146355950 146355980 -16243950 + AT_rich Low_complexity Low_complexity 1 30 0 605 56 0 0 chrX 146356240 146356312 -16243618 - Alu SINE Alu -9 300 229 2267 79 7 0 chrX 146357673 146357965 -16241965 + AluSc SINE Alu 1 294 -15 1589 255 133 30 chrX 146358230 146358983 -16240947 - L2 LINE L2 0 3313 2452 405 108 11 21 chrX 146358985 146359078 -16240852 + (TG)n Simple_repeat Simple_repeat 1 92 0 246 220 0 0 chrX 146359078 146359137 -16240793 + L1MCa LINE L1 2006 2064 -4362 2199 68 18 7 chrX 146359165 146359445 -16240485 - AluSq SINE Alu -30 283 1 626 71 24 12 chrX 146359445 146359530 -16240400 + THE1A LTR MaLR 270 355 0 214 213 67 40 chrX 146359532 146359607 -16240323 + MIR SINE MIR 161 237 -25 1192 236 36 33 chrX 146359619 146359953 -16239977 - MLT1A1 LTR MaLR -21 344 10 4718 143 19 42 chrX 146360044 146360362 -16239568 - L1PB4 LINE L1 -7 6149 5825 2237 89 17 7 chrX 146360362 146360664 -16239266 - AluSq SINE Alu -8 305 1 4718 143 19 42 chrX 146360664 146360701 -16239229 - L1PB4 LINE L1 -331 5825 5789 435 38 0 0 chrX 146360701 146360754 -16239176 + (CA)n Simple_repeat Simple_repeat 2 54 0 4718 143 19 42 chrX 146360754 146361245 -16238685 - L1PB4 LINE L1 -367 5789 5322 2308 90 3 26 chrX 146361245 146361557 -16238373 - AluY SINE Alu -6 305 1 23 78 0 0 chrX 146361560 146361611 -16238319 + AT_rich Low_complexity Low_complexity 1 51 0 1652 259 91 35 chrX 146361611 146362270 -16237660 - L2 LINE L2 -1027 2287 1592 473 353 16 16 chrX 146362522 146362754 -16237176 + L2 LINE L2 2502 2736 -578 2502 171 42 5 chrX 146362754 146363164 -16236766 - MSTB LTR MaLR 0 426 2 473 353 16 16 chrX 146363164 146363183 -16236747 + L2 LINE L2 2735 2753 -561 395 242 36 67 chrX 146363440 146363634 -16236296 + LTR37B LTR ERV1 204 391 -77 668 275 56 104 chrX 146363672 146364062 -16235868 + L2 LINE L2 2754 3104 -209 2161 105 3 0 chrX 146364062 146364357 -16235573 - AluSp SINE Alu -17 296 1 668 275 56 104 chrX 146364357 146364530 -16235400 + L2 LINE L2 3104 3284 -29 520 241 0 0 chrX 146364621 146364733 -16235197 + MLT2B2 LTR ERVL 1 112 -403 1659 88 0 5 chrX 146365721 146365937 -16233993 - AluSc SINE Alu -15 294 80 490 249 36 67 chrX 146366184 146366377 -16233553 + MLT1L LTR MaLR 14 200 -415 289 305 102 47 chrX 146366496 146366752 -16233178 + MLT1L LTR MaLR 346 615 0 297 339 8 8 chrX 146367215 146367333 -16232597 + LTR67 LTR ERVL 434 551 -6 941 285 32 48 chrX 146367424 146367541 -16232389 - MLT1I LTR MaLR -20 389 272 2060 93 0 77 chrX 146367541 146367854 -16232076 - AluSx SINE Alu -23 289 1 941 285 32 48 chrX 146367854 146368045 -16231885 - MLT1I LTR MaLR -137 272 86 915 295 79 33 chrX 146368437 146368867 -16231063 - LTR16A LTR ERVL 0 450 1 24 0 0 0 chrX 146369780 146369804 -16230126 + AT_rich Low_complexity Low_complexity 1 24 0 195 321 0 0 chrX 146370523 146370576 -16229354 - MIR3 SINE MIR -39 169 117 269 266 149 25 chrX 146371200 146371475 -16228455 - L1ME4a LINE L1 -3 6118 5810 612 317 9 5 chrX 146372014 146372235 -16227695 - L1ME4a LINE L1 -330 5791 5570 2104 118 0 16 chrX 146372276 146372582 -16227348 + AluSq SINE Alu 1 301 -12 241 357 45 6 chrX 146372655 146372812 -16227118 - L1MDa LINE L1 -3557 2983 2821 681 221 0 8 chrX 146373054 146373185 -16226745 - MER58B DNA MER1_type -9 332 203 235 273 8 33 chrX 146373250 146373371 -16226559 - L1MDa LINE L1 -3981 2559 2442 22 0 0 0 chrX 146373794 146373816 -16226114 + AT_rich Low_complexity Low_complexity 1 22 0 351 267 75 33 chrX 146373890 146374010 -16225920 - HAL1 LINE L1 -1155 1352 1228 5793 164 18 22 chrX 146374076 146374168 -16225762 - L1MA6 LINE L1 0 6300 6209 2280 108 0 0 chrX 146374168 146374475 -16225455 + AluSc SINE Alu 1 307 -2 5793 164 18 22 chrX 146374475 146375781 -16224149 - L1MA6 LINE L1 -91 6209 4907 2244 88 0 26 chrX 146375924 146376230 -16223700 - AluSg SINE Alu -12 298 1 2033 98 7 49 chrX 146377101 146377408 -16222522 + AluSx SINE Alu 1 294 -18 2152 105 63 69 chrX 146377713 146378020 -16221910 - THE1B LTR MaLR -1 363 57 2274 92 30 0 chrX 146378020 146378315 -16221615 + AluSx SINE Alu 1 304 -8 2152 105 63 69 chrX 146378315 146378369 -16221561 - THE1B LTR MaLR -307 57 4 21 36 0 0 chrX 146379155 146379183 -16220747 + AT_rich Low_complexity Low_complexity 1 28 0 995 264 42 3 chrX 146379253 146379564 -16220366 + MER33 DNA MER1_type 1 323 -1 362 269 43 91 chrX 146379841 146379934 -16219996 + MIR3 SINE MIR 30 111 -97 2120 83 0 61 chrX 146379934 146380247 -16219683 - AluSx SINE Alu -18 294 1 362 269 43 91 chrX 146380247 146380339 -16219591 + MIR3 SINE MIR 111 206 -2 2526 173 109 27 chrX 146380710 146381231 -16218699 + LTR6A LTR ERV1 1 564 0 2144 79 7 18 chrX 146381667 146381946 -16217984 + AluSq SINE Alu 1 276 -37 5418 221 24 19 chrX 146382324 146383469 -16216461 + L1M1 LINE L1 12 1166 -6399 1881 148 7 26 chrX 146383469 146383772 -16216158 - AluJb SINE Alu -15 297 1 5418 221 24 19 chrX 146383772 146383815 -16216115 + L1M1 LINE L1 1166 1207 -6358 6895 112 17 23 chrX 146383820 146384952 -16214978 + L1MA1 LINE L1 5178 6302 0 260 286 38 29 chrX 146385952 146386057 -16213873 - MLT1H LTR MaLR -13 536 431 376 302 22 66 chrX 146386079 146386261 -16213669 - MLT1H LTR MaLR -242 307 134 2335 93 3 0 chrX 146386390 146386692 -16213238 + AluSx SINE Alu 10 312 0 362 261 86 85 chrX 146386927 146387237 -16212693 - MLT1J2 LTR MaLR 0 450 106 1502 193 7 10 chrX 146387438 146387560 -16212370 + AluJb SINE Alu 1 122 -190 267 31 0 0 chrX 146387560 146387592 -16212338 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1502 193 7 10 chrX 146387592 146387759 -16212171 + AluJb SINE Alu 122 289 -23 2332 74 13 0 chrX 146387796 146388094 -16211836 + AluSp SINE Alu 1 302 -11 37632 77 38 3 chrX 146388183 146394119 -16205811 - L1PA5 LINE L1 0 6154 4 23 78 0 0 chrX 146394137 146394188 -16205742 + AT_rich Low_complexity Low_complexity 1 51 0 497 229 128 22 chrX 146394635 146394814 -16205116 - MLT1F LTR MaLR -8 534 337 375 86 0 35 chrX 146395051 146395109 -16204821 - MLT2C2 LTR ERVL -3 461 406 441 95 0 0 chrX 146395109 146395172 -16204758 + (GA)n Simple_repeat Simple_repeat 1 63 0 2025 190 21 3 chrX 146395172 146395585 -16204345 - MLT2B1 LTR ERVL -38 516 1 279 307 0 13 chrX 146395585 146395660 -16204270 - MLT1J2 LTR MaLR -519 74 1 494 205 18 36 chrX 146395880 146395992 -16203938 + L1ME3 LINE L1 14 123 -6419 661 282 0 6 chrX 146396408 146396571 -16203359 + MIR SINE MIR 47 208 -54 2573 126 3 18 chrX 146397056 146397437 -16202493 + THE1C LTR MaLR 1 375 0 198 146 49 0 chrX 146398044 146398085 -16201845 + L2 LINE L2 3261 3303 -10 1165 168 0 0 chrX 146398361 146398557 -16201373 - L1MA5A LINE L1 -3 6294 6099 485 317 67 37 chrX 146398591 146398966 -16200964 + L1ME3 LINE L1 522 907 -5918 325 194 0 56 chrX 146399021 146399093 -16200837 - MER90 LTR ERV1 -27 587 520 1941 248 44 6 chrX 146399223 146399698 -16200232 - MER90 LTR ERV1 -112 502 10 243 61 0 0 chrX 146399930 146399963 -16199967 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2027 123 7 3 chrX 146400039 146400348 -16199582 - AluSq SINE Alu -3 310 1 4908 226 96 63 chrX 146400510 146401387 -16198543 + L1MC3 LINE L1 6181 7204 -581 277 263 0 13 chrX 146401387 146401463 -16198467 + MLT1F1 LTR MaLR 33 107 -460 4908 226 96 63 chrX 146401463 146402057 -16197873 + L1MC3 LINE L1 7204 7777 -8 2321 90 0 0 chrX 146402068 146402367 -16197563 + AluSc SINE Alu 1 299 -10 1739 130 0 0 chrX 146402491 146402737 -16197193 + AluY SINE Alu 35 280 -31 202 206 0 0 chrX 146402741 146402775 -16197155 + (TATG)n Simple_repeat Simple_repeat 1 34 0 593 317 62 30 chrX 146402788 146403289 -16196641 + L1ME3 LINE L1 1745 2261 -4564 329 348 43 19 chrX 146403290 146403615 -16196315 + L1ME3 LINE L1 3746 4078 -2566 659 239 8 0 chrX 146403655 146403785 -16196145 + FLAM_A SINE Alu 2 132 -1 2256 139 51 20 chrX 146403844 146404197 -16195733 - THE1B LTR MaLR 0 364 1 8282 110 1 25 chrX 146404201 146405310 -16194620 - THE1B-int LTR MaLR -4 1576 501 2190 125 0 6 chrX 146405310 146405622 -16194308 - AluSg SINE Alu 0 310 1 8282 110 1 25 chrX 146405622 146405789 -16194141 - THE1B-int LTR MaLR -1079 501 331 5910 53 147 67 chrX 146405791 146406875 -16193055 + MER11A LTR ERVK 3 1266 0 2463 69 3 0 chrX 146406875 146407210 -16192720 - THE1B-int LTR MaLR -1244 336 1 1957 97 43 117 chrX 146407210 146407262 -16192668 - THE1B LTR MaLR 0 364 310 1873 120 54 4 chrX 146407262 146407538 -16192392 + AluSx SINE Alu 13 302 -10 1957 97 43 117 chrX 146407538 146407726 -16192204 - THE1B LTR MaLR -54 310 162 2185 110 7 7 chrX 146407726 146408027 -16191903 + AluSx SINE Alu 1 301 -11 1957 97 43 117 chrX 146408027 146408178 -16191752 - THE1B LTR MaLR -202 162 1 1692 215 69 43 chrX 146408193 146408685 -16191245 + MLT1D LTR MaLR 1 505 0 499 283 112 35 chrX 146408685 146409059 -16190871 + L1ME3 LINE L1 4151 4553 -2091 1184 256 77 25 chrX 146409071 146409142 -16190788 + L1ME3 LINE L1 4649 4715 -1929 420 20 0 0 chrX 146409142 146409191 -16190739 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 1184 256 77 25 chrX 146409191 146409771 -16190159 + L1ME3 LINE L1 4715 5334 -1310 460 273 67 14 chrX 146409769 146409978 -16189952 + L1ME3 LINE L1 5537 5756 -888 * 1514 284 63 16 chrX 146409979 146410753 -16189177 + L1ME3 LINE L1 5843 6653 -7 327 353 49 27 chrX 146411435 146411659 -16188271 + MIR SINE MIR 3 231 -31 227 306 59 12 chrX 146411750 146411835 -16188095 + L2 LINE L2 3179 3267 -5 2016 89 0 0 chrX 146412383 146412640 -16187290 + AluSx SINE Alu 39 295 -17 2099 101 7 11 chrX 146413128 146413414 -16186516 - AluSc SINE Alu -24 285 1 262 313 87 0 chrX 146413433 146413548 -16186382 - MIR SINE MIR -74 188 64 30 27 0 0 chrX 146413723 146413760 -16186170 + AT_rich Low_complexity Low_complexity 1 37 0 280 321 0 69 chrX 146414047 146414178 -16185752 - L2 LINE L2 -4 3309 3188 1864 142 26 49 chrX 146414183 146414237 -16185693 + MSTC LTR MaLR 1 55 -373 23 0 0 0 chrX 146414237 146414260 -16185670 + AT_rich Low_complexity Low_complexity 1 23 0 1864 142 26 49 chrX 146414260 146414651 -16185279 + MSTC LTR MaLR 55 417 -11 357 296 0 64 chrX 146414745 146414870 -16185060 + L2 LINE L2 3185 3301 -12 1249 275 54 11 chrX 146414872 146415547 -16184383 - L1M4 LINE L1 -3572 2810 2098 21565 50 4 1 chrX 146415925 146419459 -16180471 - L1PA4 LINE L1 0 6155 2607 12169 57 2 1 chrX 146419459 146421118 -16178812 + L1PA4 LINE L1 936 2597 -3549 6633 188 20 16 chrX 146421107 146423592 -16176338 + L1M1 LINE L1 2262 4755 -2810 * 4820 92 10 7 chrX 146423656 146424365 -16175565 - LTR19-int LTR ERV1 -52 5534 4824 * 17494 98 54 46 chrX 146424364 146427495 -16172435 - LTR19-int LTR ERV1 -967 4619 1462 1780 102 8 4 chrX 146427495 146427740 -16172190 + AluSq SINE Alu 1 246 -67 1329 118 69 8 chrX 146427740 146427985 -16171945 - LTR19A LTR ERV1 -226 260 1 233 128 26 0 chrX 146428134 146428173 -16171757 + MIR3 SINE MIR 159 198 -10 2098 121 3 0 chrX 146428210 146428500 -16171430 + AluY SINE Alu 1 291 -20 555 78 0 0 chrX 146428500 146428577 -16171353 + (TG)n Simple_repeat Simple_repeat 2 78 0 740 310 9 9 chrX 146428639 146428888 -16171042 - MIR SINE MIR 0 262 18 204 213 21 0 chrX 146429118 146429165 -16170765 - L2 LINE L2 -5 3308 3261 2088 136 3 0 chrX 146429302 146429611 -16170319 + AluSg SINE Alu 1 310 0 605 267 88 65 chrX 146429653 146429915 -16170015 - L2 LINE L2 -339 2975 2708 452 198 0 9 chrX 146430100 146430206 -16169724 + CT-rich Low_complexity Low_complexity 3 107 0 2232 99 3 16 chrX 146430433 146430745 -16169185 - AluSx SINE Alu -4 308 1 1289 204 37 3 chrX 146431455 146431783 -16168147 - L1MA8 LINE L1 -5 6286 5948 23 0 0 0 chrX 146431792 146431815 -16168115 + AT_rich Low_complexity Low_complexity 1 23 0 4035 132 14 2 chrX 146431815 146432453 -16167477 - L1PA15 LINE L1 -5 6160 5515 3187 220 35 34 chrX 146432454 146433316 -16166614 - L1M1 LINE L1 -6690 875 13 189 0 0 0 chrX 146434722 146434743 -16165187 + (TTCCC)n Simple_repeat Simple_repeat 1 21 0 2845 116 29 7 chrX 146435248 146435698 -16164232 + LTR46 LTR ERV1 1 460 0 4772 146 91 55 chrX 146436372 146437850 -16162080 + MER4-int LTR ERV1 1502 2926 -3672 2007 130 0 13 chrX 146437850 146438149 -16161781 + AluSx SINE Alu 3 297 -15 4772 146 91 55 chrX 146438149 146438527 -16161403 + MER4-int LTR ERV1 2926 3289 -3309 1716 113 140 4 chrX 146438527 146438792 -16161138 - AluSx SINE Alu -1 301 1 4772 146 91 55 chrX 146438792 146439844 -16160086 + MER4-int LTR ERV1 3289 5029 -1569 2282 95 3 3 chrX 146439844 146440138 -16159792 + AluSg1 SINE Alu 1 294 -15 2845 116 29 7 chrX 146440950 146441400 -16158530 - LTR46 LTR ERV1 0 460 1 189 0 0 0 chrX 146441905 146441926 -16158004 + (GGGAA)n Simple_repeat Simple_repeat 1 21 0 3187 220 35 34 chrX 146443332 146444194 -16155736 + L1M1 LINE L1 13 875 -6690 4061 128 14 2 chrX 146444195 146444833 -16155097 + L1PA15 LINE L1 5515 6160 -5 1288 198 35 15 chrX 146444850 146445193 -16154737 + L1MA8 LINE L1 5937 6286 -5 2177 93 10 16 chrX 146445903 146446213 -16153717 + AluSx SINE Alu 1 308 -4 473 189 0 9 chrX 146446440 146446546 -16153384 + GA-rich Low_complexity Low_complexity 3 107 0 576 271 88 65 chrX 146446731 146446993 -16152937 + L2 LINE L2 2708 2975 -339 2022 139 3 0 chrX 146447028 146447337 -16152593 - AluSg SINE Alu 0 310 1 204 213 21 0 chrX 146447474 146447521 -16152409 + L2 LINE L2 3261 3308 -5 741 310 9 9 chrX 146447751 146448000 -16151930 + MIR SINE MIR 18 262 0 369 131 0 0 chrX 146448064 146448125 -16151805 + (CA)n Simple_repeat Simple_repeat 2 62 0 2110 118 3 0 chrX 146448125 146448414 -16151516 - AluY SINE Alu -21 290 1 233 128 26 0 chrX 146448451 146448490 -16151440 - MIR3 SINE MIR -10 198 159 1340 118 69 8 chrX 146448639 146448884 -16151046 + LTR19A LTR ERV1 1 260 -226 1791 98 8 4 chrX 146448884 146449129 -16150801 - AluSq SINE Alu -67 246 1 17539 96 55 49 chrX 146449129 146452267 -16147663 + LTR19A-int LTR ERV1 1462 4619 -967 5304 93 1 7 chrX 146452266 146453033 -16146897 + LTR19A-int LTR ERV1 4824 5586 0 * 1074 142 84 0 chrX 146453033 146453223 -16146707 + LTR19A LTR ERV1 1 206 -280 5726 53 1 30 chrX 146453265 146454057 -16145873 - L1PA5 LINE L1 -8 6146 5378 565 175 110 7 chrX 146454267 146454421 -16145509 - LTR36 LTR ERV1 -441 170 1 955 364 55 43 chrX 146455285 146456207 -16143723 - L2 LINE L2 -9 3263 2346 2262 79 7 0 chrX 146456415 146456706 -16143224 - AluSp SINE Alu -20 293 1 245 176 29 0 chrX 146456767 146456835 -16143095 + CT-rich Low_complexity Low_complexity 4 73 0 295 333 45 28 chrX 146456848 146457025 -16142905 - L2 LINE L2 -14 3299 3120 462 311 64 48 chrX 146459991 146460242 -16139688 - MIR SINE MIR -6 256 2 414 282 41 12 chrX 146460691 146460861 -16139069 + MER117 DNA MER1_type 1 175 -22 1626 106 4 42 chrX 146460914 146461179 -16138751 - MER50 LTR ERV1 -479 255 1 1709 261 26 22 chrX 146461181 146461680 -16138250 - MLT1D LTR MaLR 0 505 5 409 154 352 0 chrX 146463214 146463305 -16136625 - FLAM_C SINE Alu -20 123 1 1269 211 24 33 chrX 146463319 146463745 -16136185 + L1MC5 LINE L1 7505 7926 -35 854 195 76 13 chrX 146463918 146464154 -16135776 - L1ME1 LINE L1 -14 6152 5902 2409 85 20 0 chrX 146464302 146464608 -16135322 - AluSx SINE Alu 0 312 1 339 91 73 0 chrX 146464948 146465003 -16134927 + MER63 DNA MER1_type 1 685 -377 836 164 73 59 chrX 146465005 146465225 -16134705 + MLT1C LTR MaLR 2 224 -243 24 0 0 0 chrX 146465799 146465823 -16134107 + AT_rich Low_complexity Low_complexity 1 24 0 854 298 4 4 chrX 146466578 146466803 -16133127 + MIR SINE MIR 32 256 -6 2420 80 0 0 chrX 146467588 146467888 -16132042 + AluSg SINE Alu 1 300 -10 1445 137 4 0 chrX 146468063 146468304 -16131626 + L1MA3 LINE L1 6064 6305 0 1104 72 0 14 chrX 146468400 146468539 -16131391 + AluSg SINE Alu 1 137 -173 2097 93 7 7 chrX 146468540 146468820 -16131110 + AluSg SINE Alu 21 300 -10 21 36 0 0 chrX 146468913 146468941 -16130989 + AT_rich Low_complexity Low_complexity 1 28 0 381 283 47 0 chrX 146469016 146469122 -16130808 - MIR SINE MIR -33 229 119 4071 197 14 8 chrX 146469434 146470423 -16129507 - L1MB8 LINE L1 -9 6169 5176 477 312 230 8 chrX 146471608 146471977 -16127953 + L2 LINE L2 86 536 -2778 821 311 118 66 chrX 146472000 146472496 -16127434 + L2 LINE L2 1201 1757 -1557 2085 112 7 0 chrX 146472496 146472813 -16127117 + AluSg SINE Alu 1 319 0 821 311 118 66 chrX 146472813 146473119 -16126811 + L2 LINE L2 1757 2046 -1268 1844 184 25 28 chrX 146473121 146473326 -16126604 - L1M3 LINE L1 -512 5668 5464 2322 89 0 10 chrX 146473326 146473630 -16126300 + AluSx SINE Alu 1 301 -11 1844 184 25 28 chrX 146473630 146474011 -16125919 - L1M3 LINE L1 -716 5464 5075 303 307 11 11 chrX 146474075 146474163 -16125767 - L2 LINE L2 0 3272 3185 521 260 92 15 chrX 146474164 146474360 -16125570 + MLT1J2 LTR MaLR 1 211 -239 1042 196 45 112 chrX 146474447 146474804 -16125126 + MLT1A1 LTR MaLR 2 334 -31 1530 189 57 26 chrX 146475202 146475588 -16124342 + LTR52 LTR ERVL 1 398 -23 2878 212 33 11 chrX 146475599 146476263 -16123667 + LTR52-int LTR ERVL 10 688 -2868 513 174 66 41 chrX 146476265 146476386 -16123544 + LTR52-int LTR ERVL 846 969 -2587 405 0 0 0 chrX 146476386 146476431 -16123499 + (CA)n Simple_repeat Simple_repeat 1 45 0 438 192 39 19 chrX 146478138 146478242 -16121688 + LTR52 LTR ERVL 1 106 -315 6217 269 63 40 chrX 146478277 146480110 -16119820 + LTR52-int LTR ERVL 1284 3178 -378 8678 55 3 0 chrX 146480110 146481178 -16118752 + MER11C LTR ERVK 1 1071 0 6217 269 63 40 chrX 146481178 146481565 -16118365 + LTR52-int LTR ERVL 3178 3555 -1 507 233 0 8 chrX 146481603 146481723 -16118207 + LTR52 LTR ERVL 301 419 -2 198 143 0 0 chrX 146481740 146481775 -16118155 + (TA)n Simple_repeat Simple_repeat 1 35 0 569 357 106 17 chrX 146481845 146482468 -16117462 - L2 LINE L2 -12 3260 2569 624 327 47 24 chrX 146482482 146482736 -16117194 + MIR SINE MIR 3 262 0 2382 127 22 5 chrX 146482933 146483302 -16116628 - THE1C LTR MaLR 0 375 1 1379 103 5 36 chrX 146483700 146483924 -16116006 + THE1B LTR MaLR 148 364 0 10189 120 32 8 chrX 146483924 146485466 -16114464 + THE1B-int LTR MaLR 1 1580 0 2216 133 31 0 chrX 146485466 146485819 -16114111 + THE1B LTR MaLR 1 364 0 1953 133 3 3 chrX 146485867 146486152 -16113778 + AluSg SINE Alu 1 285 -25 307 374 39 57 chrX 146486307 146486588 -16113342 + L2 LINE L2 2996 3271 -1 680 259 99 63 chrX 146486664 146486973 -16112957 + MSTD LTR MaLR 1 328 -68 2007 123 9 25 chrX 146486973 146487289 -16112641 - AluY SINE Alu 0 311 1 680 259 99 63 chrX 146487289 146487361 -16112569 + MSTD LTR MaLR 328 396 0 28 29 0 0 chrX 146487372 146487407 -16112523 + AT_rich Low_complexity Low_complexity 1 35 0 2222 128 0 0 chrX 146487414 146487711 -16112219 + AluSg SINE Alu 5 301 -9 258 287 11 0 chrX 146487799 146487886 -16112044 + (TA)n Simple_repeat Simple_repeat 2 89 0 1414 220 30 33 chrX 146488239 146488548 -16111382 - MLT1A2 LTR MaLR -4 370 62 1555 190 60 30 chrX 146488548 146488912 -16111018 - THE1C LTR MaLR 0 375 1 9914 131 30 7 chrX 146488912 146490456 -16109474 - THE1C-int LTR MaLR 0 1580 1 1631 188 52 33 chrX 146490456 146490824 -16109106 - THE1C LTR MaLR 0 375 1 1414 220 30 33 chrX 146490824 146490880 -16109050 - MLT1A2 LTR MaLR -309 65 4 1186 210 68 0 chrX 146490899 146491151 -16108779 + Tigger3b DNA MER2_type 2 270 -961 619 121 0 10 chrX 146491157 146491256 -16108674 + MER4A LTR ERV1 1 98 -566 1792 123 14 25 chrX 146491256 146491605 -16108325 + MER4A LTR ERV1 261 664 0 4804 144 59 6 chrX 146491605 146492514 -16107416 + Tigger3b DNA MER2_type 274 1231 0 486 287 27 58 chrX 146492768 146492956 -16106974 - MIR SINE MIR -33 229 48 570 279 115 29 chrX 146493002 146493210 -16106720 - MIR SINE MIR -23 239 14 2468 77 3 3 chrX 146493442 146493754 -16106176 - AluSp SINE Alu 0 313 2 329 318 46 26 chrX 146494834 146494985 -16104945 + MIR SINE MIR 102 255 -7 1035 319 128 50 chrX 146495033 146495848 -16104082 + L3 LINE CR1 400 1277 -300 292 293 201 24 chrX 146495950 146496199 -16103731 - L2 LINE L2 -174 3139 2847 413 270 50 0 chrX 146496451 146496651 -16103279 - L1M4 LINE L1 -816 5330 5121 948 248 9 9 chrX 146498411 146498629 -16101301 + MER58A DNA MER1_type 5 222 -2 695 316 114 55 chrX 146498905 146499361 -16100569 + L2 LINE L2 2831 3313 0 520 235 85 13 chrX 146499438 146499591 -16100339 + MIR SINE MIR 81 244 -18 229 132 19 57 chrX 146499798 146499851 -16100079 - L2 LINE L2 -2 3311 3261 377 302 9 0 chrX 146500152 146500258 -16099672 + MER81 DNA DNA 8 114 0 271 373 91 0 chrX 146501183 146501293 -16098637 + L2 LINE L2 3152 3271 -1 219 268 0 0 chrX 146501490 146501546 -16098384 + (TAA)n Simple_repeat Simple_repeat 2 57 0 412 257 73 9 chrX 146501566 146501675 -16098255 - L2 LINE L2 -4 3268 3153 283 333 41 20 chrX 146501670 146501817 -16098113 + L2 LINE L2 2249 2398 -916 * 326 331 25 16 chrX 146501810 146501931 -16097999 + L2 LINE L2 3180 3301 -12 347 316 122 0 chrX 146502348 146502487 -16097443 - MIR SINE MIR -33 229 74 296 327 143 76 chrX 146503493 146503808 -16096122 + L2 LINE L2 2853 3188 -84 21 71 0 0 chrX 146504067 146504109 -16095821 + AT_rich Low_complexity Low_complexity 1 42 0 310 243 14 0 chrX 146504245 146504315 -16095615 - MIR SINE MIR -113 149 79 196 329 89 0 chrX 146504352 146504431 -16095499 - L3 LINE CR1 -10 1567 1482 1737 152 3 0 chrX 146505464 146505761 -16094169 + L1MB1 LINE L1 5865 6162 -6 40 21 0 0 chrX 146506454 146506501 -16093429 + AT_rich Low_complexity Low_complexity 1 47 0 4241 178 28 69 chrX 146507535 146509563 -16090367 + L1PA16 LINE L1 3990 5917 -249 489 212 0 9 chrX 146509575 146509688 -16090242 + L1P LINE L1 4850 4961 -1185 279 137 0 0 chrX 146509685 146509736 -16090194 - L1PA16 LINE L1 -169 5997 5947 * 1055 168 0 0 chrX 146509758 146509937 -16089993 + L1PA16 LINE L1 5935 6113 -53 37 52 0 0 chrX 146509991 146510049 -16089881 + AT_rich Low_complexity Low_complexity 1 58 0 552 315 104 56 chrX 146510634 146510937 -16088993 - L2 LINE L2 -35 3237 2950 2182 102 3 0 chrX 146510937 146511230 -16088700 + AluSc SINE Alu 1 294 -15 552 315 104 56 chrX 146511230 146511617 -16088313 - L2 LINE L2 -322 2950 2523 184 350 48 10 chrX 146511983 146512086 -16087844 - L3b LINE CR1 -353 1230 1124 30 69 0 0 chrX 146513000 146513058 -16086872 + AT_rich Low_complexity Low_complexity 1 58 0 1712 119 4 0 chrX 146513058 146513302 -16086628 - AluSx SINE Alu -27 285 41 3427 278 57 33 chrX 146513391 146514940 -16084990 - L2 LINE L2 -3 3310 1720 1269 337 79 31 chrX 146514949 146515681 -16084249 - L2 LINE L2 -2325 989 223 5383 132 6 27 chrX 146515793 146517020 -16082910 - L1PA16 LINE L1 -10 6156 4926 853 258 19 0 chrX 146517133 146517346 -16082584 + MER58A DNA MER1_type 2 218 -6 301 314 0 39 chrX 146517403 146517505 -16082425 - MER5B DNA MER1_type -67 111 14 690 128 0 0 chrX 146517825 146517927 -16082003 + AluSg/x SINE Alu 211 312 0 443 235 273 10 chrX 146517929 146518218 -16081712 + HAL1 LINE L1 1299 1663 -844 321 234 71 64 chrX 146519175 146519316 -16080614 - MIR SINE MIR -46 216 75 574 306 81 14 chrX 146520397 146520606 -16079324 + MIR SINE MIR 36 258 -4 217 273 0 0 chrX 146520692 146520736 -16079194 + L2 LINE L2 3210 3253 -19 548 344 16 32 chrX 146521243 146521551 -16078379 - L3 LINE CR1 -62 1515 1213 1734 209 11 22 chrX 146521738 146522107 -16077823 - MLT1A1 LTR MaLR 0 365 1 201 74 0 0 chrX 146522140 146522167 -16077763 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 2957 168 66 9 chrX 146522796 146523372 -16076558 - MER90 LTR ERV1 -5 609 1 517 287 72 96 chrX 146523373 146523708 -16076222 - L2 LINE L2 -40 3273 2947 200 301 55 75 chrX 146524765 146524911 -16075019 - MIR SINE MIR -25 237 95 433 272 98 27 chrX 146525010 146525194 -16074736 + MIR SINE MIR 66 262 0 286 333 25 8 chrX 146525225 146525345 -16074585 + MIR SINE MIR 124 245 -17 2369 84 3 0 chrX 146527858 146528156 -16071774 + AluSx SINE Alu 10 308 -4 278 265 82 65 chrX 146528404 146528574 -16071356 - MLT1J2 LTR MaLR 0 450 278 1516 196 7 10 chrX 146528915 146529037 -16070893 + AluJb SINE Alu 1 122 -190 402 21 0 0 chrX 146529037 146529084 -16070846 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1516 196 7 10 chrX 146529084 146529252 -16070678 + AluJb SINE Alu 122 290 -22 2340 84 7 0 chrX 146529289 146529588 -16070342 + AluSp SINE Alu 1 301 -12 21238 54 2 4 chrX 146529679 146533222 -16066708 - L1PA5 LINE L1 -9 6145 2607 12009 62 3 0 chrX 146533222 146534879 -16065051 + L1PA5 LINE L1 936 2597 -3549 6833 186 14 15 chrX 146534868 146537364 -16062566 + L1M1 LINE L1 2262 4755 -2810 * 4796 92 10 7 chrX 146537428 146538137 -16061793 - LTR19-int LTR ERV1 -52 5534 4824 * 17259 101 53 49 chrX 146538136 146541281 -16058649 - LTR19-int LTR ERV1 -967 4619 1462 1750 106 8 4 chrX 146541281 146541526 -16058404 + AluSq SINE Alu 1 246 -67 1302 127 70 8 chrX 146541526 146541770 -16058160 - LTR19A LTR ERV1 -226 260 2 233 128 26 0 chrX 146541920 146541959 -16057971 + MIR3 SINE MIR 159 198 -10 1953 118 11 7 chrX 146541996 146542283 -16057647 + AluSc SINE Alu 1 288 -21 411 98 0 0 chrX 146542285 146542346 -16057584 + (TG)n Simple_repeat Simple_repeat 2 62 0 721 313 9 9 chrX 146542404 146542653 -16057277 - MIR SINE MIR 0 262 18 244 184 20 0 chrX 146542879 146542928 -16057002 - L2 LINE L2 -3 3310 3261 2083 134 3 0 chrX 146543065 146543411 -16056519 + AluSg SINE Alu 1 347 0 605 276 75 64 chrX 146543435 146543700 -16056230 - L2 LINE L2 -339 2975 2708 344 188 0 12 chrX 146543890 146543970 -16055960 + CT-rich Low_complexity Low_complexity 3 81 0 2197 106 3 13 chrX 146544197 146544508 -16055422 - AluSx SINE Alu -4 308 1 1238 207 35 15 chrX 146545218 146545561 -16054369 - L1MA8 LINE L1 -5 6286 5937 3975 135 14 2 chrX 146545578 146546216 -16053714 - L1PA15 LINE L1 -5 6160 5515 3199 217 37 37 chrX 146546217 146547080 -16052850 - L1M1 LINE L1 -6690 875 13 2845 116 29 7 chrX 146549010 146549460 -16050470 + LTR46 LTR ERV1 1 460 0 2255 102 3 3 chrX 146550273 146550567 -16049363 - AluSg1 SINE Alu -15 294 1 5311 138 64 30 chrX 146550567 146551722 -16048208 - MER4-int LTR ERV1 -1569 5029 3836 281 136 68 0 chrX 146551720 146551779 -16048151 - MER4-int LTR ERV1 -2917 3681 3619 * 1169 84 0 0 chrX 146551788 146551931 -16047999 + AluSq SINE Alu 12 154 -159 783 112 0 9 chrX 146551931 146552047 -16047883 + AluSg/x SINE Alu 189 303 -6 277 315 179 73 chrX 146552973 146553275 -16046655 - L2 LINE L2 -2 3270 2937 21 57 0 0 chrX 146553515 146553550 -16046380 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chrX 146553784 146553810 -16046120 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 14856 44 4 3 chrX 146553825 146557054 -16042876 - L1PA5 LINE L1 -5 6149 2926 321 335 119 10 chrX 146557287 146557597 -16042333 - L1M4 LINE L1 -1279 4867 4524 412 289 127 41 chrX 146557795 146557992 -16041938 + MIR SINE MIR 35 248 -14 2461 117 10 39 chrX 146558219 146558404 -16041526 - THE1C LTR MaLR 0 375 186 2085 138 48 22 chrX 146558404 146558759 -16041171 - THE1B LTR MaLR 0 364 1 11674 93 8 0 chrX 146558763 146560327 -16039603 - THE1B-int LTR MaLR -4 1576 1 2005 138 53 28 chrX 146560327 146560682 -16039248 - THE1B LTR MaLR 0 364 1 2461 117 10 39 chrX 146560682 146560876 -16039054 - THE1C LTR MaLR -190 185 1 358 277 12 0 chrX 146560955 146561038 -16038892 + AluJ/FLAM SINE Alu 1 84 -218 234 242 66 33 chrX 146561043 146561134 -16038796 - L1MC5 LINE L1 -551 7410 7317 344 262 9 19 chrX 146561177 146561284 -16038646 - LTR16B LTR ERVL 0 464 359 24 0 0 0 chrX 146561314 146561338 -16038592 + AT_rich Low_complexity Low_complexity 1 24 0 258 385 42 42 chrX 146561347 146561612 -16038318 + L2 LINE L2 2819 3083 -189 512 235 134 28 chrX 146561904 146562083 -16037847 + MIR SINE MIR 1 198 -64 2313 89 0 3 chrX 146562214 146562505 -16037425 + AluSg SINE Alu 1 290 -20 1297 312 41 43 chrX 146562552 146563382 -16036548 - L2 LINE L2 -19 3294 2458 538 275 78 53 chrX 146563383 146563627 -16036303 - MIR SINE MIR 0 262 13 902 194 46 42 chrX 146564342 146564558 -16035372 + MER20 DNA MER1_type 3 219 0 290 87 22 0 chrX 146565497 146565543 -16034387 + (CA)n Simple_repeat Simple_repeat 2 48 0 1728 291 55 28 chrX 146566041 146566714 -16033216 + L1M2c LINE L1 3 693 -6096 350 274 97 68 chrX 146567121 146567369 -16032561 + MIR SINE MIR 2 256 -6 3710 48 0 0 chrX 146567513 146567968 -16031962 - L1PA5 LINE L1 0 6154 5700 1133 171 89 55 chrX 146568127 146568466 -16031464 - MLT1A1 LTR MaLR -2 426 1 520 244 20 117 chrX 146568515 146568618 -16031312 + L1ME3A LINE L1 5896 6007 -163 264 59 0 0 chrX 146568618 146568652 -16031278 + (TG)n Simple_repeat Simple_repeat 1 34 0 520 244 20 117 chrX 146568652 146568847 -16031083 + L1ME3A LINE L1 6007 6165 -5 935 300 102 12 chrX 146568908 146569193 -16030737 - L1ME4a LINE L1 -65 6056 5798 2293 110 0 0 chrX 146569193 146569502 -16030428 - AluSx SINE Alu -3 309 1 935 300 102 12 chrX 146569502 146569733 -16030197 - L1ME4a LINE L1 -323 5798 5493 2555 195 27 37 chrX 146570363 146570740 -16029190 - MER63C DNA MER1_type -421 639 269 2206 106 0 25 chrX 146570740 146571060 -16028870 + AluSx SINE Alu 1 312 0 2555 195 27 37 chrX 146571060 146571273 -16028657 - MER63C DNA MER1_type -791 269 55 3210 267 35 67 chrX 146571378 146571715 -16028215 - L2 LINE L2 -532 2782 2436 2149 120 0 3 chrX 146571715 146572007 -16027923 + AluSg SINE Alu 1 291 -19 3210 267 35 67 chrX 146572007 146572850 -16027080 - L2 LINE L2 -878 2436 1640 983 219 14 10 chrX 146572856 146573211 -16026719 - MSTD LTR MaLR -2 394 1 719 297 149 16 chrX 146573211 146573534 -16026396 - L2 LINE L2 -1673 1641 1276 1892 138 55 22 chrX 146573534 146573897 -16026033 + THE1C LTR MaLR 1 375 0 284 314 29 10 chrX 146574016 146574118 -16025812 - MIR SINE MIR -39 223 120 1011 152 0 0 chrX 146574129 146574346 -16025584 + (TA)n Simple_repeat Simple_repeat 1 217 0 209 321 0 0 chrX 146574416 146574472 -16025458 - L2 LINE L2 -503 2811 2756 1785 225 49 34 chrX 146574530 146575024 -16024906 + MLT1D LTR MaLR 3 503 -2 193 232 37 85 chrX 146575781 146575863 -16024067 + MIR SINE MIR 64 141 -67 429 286 122 20 chrX 146576104 146576251 -16023679 + MIR3 SINE MIR 35 196 -12 921 278 5 0 chrX 146576252 146576475 -16023455 - MER58A DNA MER1_type 0 224 1 623 261 0 101 chrX 146578018 146578256 -16021674 + MER20 DNA MER1_type 1 214 -5 1955 81 106 3 chrX 146578960 146579244 -16020686 - AluSp SINE Alu 0 313 1 288 341 53 42 chrX 146579561 146579922 -16020008 - L1ME LINE L1 -406 5715 5351 23 33 0 0 chrX 146580250 146580280 -16019650 + AT_rich Low_complexity Low_complexity 1 30 0 427 322 64 25 chrX 146580368 146580570 -16019360 + MIR SINE MIR 47 256 -6 24 0 0 0 chrX 146580977 146581001 -16018929 + AT_rich Low_complexity Low_complexity 1 24 0 2025 82 71 0 chrX 146581080 146581360 -16018570 - AluY SINE Alu -11 300 1 336 270 50 95 chrX 146581701 146581923 -16018007 - L1ME LINE L1 -1632 4514 4303 2180 134 0 0 chrX 146581963 146582268 -16017662 - AluSx SINE Alu -5 307 3 244 186 0 34 chrX 146582323 146582382 -16017548 - L1MA9 LINE L1 -39 6273 6217 27 49 0 0 chrX 146582439 146582480 -16017450 + AT_rich Low_complexity Low_complexity 1 41 0 267 290 23 65 chrX 146582535 146582749 -16017181 - L1ME LINE L1 -2200 3946 3742 336 83 0 0 chrX 146582951 146582999 -16016931 + (GA)n Simple_repeat Simple_repeat 2 49 0 1087 173 52 0 chrX 146583076 146583267 -16016663 + THE1B LTR MaLR 1 201 -163 523 245 7 7 chrX 146583290 146583433 -16016497 + L1MB7 LINE L1 6033 6175 -9 366 349 47 5 chrX 146583539 146583754 -16016176 - L2 LINE L2 -859 2455 2232 198 329 215 29 chrX 146584015 146584359 -16015571 - L2 LINE L2 -1351 1963 1556 198 0 0 0 chrX 146584574 146584596 -16015334 + (TG)n Simple_repeat Simple_repeat 2 23 0 1958 137 0 32 chrX 146585544 146585858 -16014072 + AluSx SINE Alu 1 304 -8 432 277 34 14 chrX 146585876 146586024 -16013906 - MIR SINE MIR -36 226 76 245 338 13 38 chrX 146586085 146586242 -16013688 - MIR SINE MIR -63 199 47 186 350 20 0 chrX 146586366 146586466 -16013464 + MIR SINE MIR 146 247 -15 1370 224 33 41 chrX 146586952 146587324 -16012606 + MLT2B1 LTR ERVL 1 418 -102 201 167 56 0 chrX 146587364 146587418 -16012512 + (TA)n Simple_repeat Simple_repeat 1 57 0 227 204 0 0 chrX 146587435 146587484 -16012446 + MLT2B1 LTR ERVL 472 520 0 439 310 55 25 chrX 146587593 146587793 -16012137 - MIR SINE MIR -56 206 1 363 44 0 0 chrX 146588478 146588523 -16011407 + (TG)n Simple_repeat Simple_repeat 1 45 0 271 366 46 15 chrX 146588660 146588791 -16011139 + L2 LINE L2 3138 3272 0 232 245 0 0 chrX 146588800 146588849 -16011081 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 352 318 0 23 chrX 146589155 146589284 -16010646 - L2 LINE L2 0 3313 3188 496 318 94 46 chrX 146589303 146589847 -16010083 + HAL1 LINE L1 155 724 -1783 2275 112 0 0 chrX 146589895 146590199 -16009731 - AluSg SINE Alu -6 304 1 262 320 0 52 chrX 146590407 146590504 -16009426 - MER5B DNA MER1_type -80 98 7 186 314 85 25 chrX 146591634 146591752 -16008178 - L2 LINE L2 -213 3059 2935 503 67 0 0 chrX 146592180 146592255 -16007675 - L1PA4 LINE L1 -3 6152 6078 287 0 0 0 chrX 146592255 146592287 -16007643 + L1PA8 LINE L1 5850 5881 -291 287 295 39 0 chrX 146592596 146592674 -16007256 + MIR SINE MIR 86 166 -96 285 29 0 0 chrX 146593382 146593416 -16006514 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 284 0 14 chrX 146593473 146593547 -16006383 + L2 LINE L2 3237 3309 -4 187 286 63 16 chrX 146593548 146593611 -16006319 - MIR SINE MIR -116 146 81 198 0 0 0 chrX 146593637 146593659 -16006271 + (TG)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chrX 146593674 146593697 -16006233 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chrX 146593712 146593741 -16006189 + (TG)n Simple_repeat Simple_repeat 2 30 0 5505 115 32 49 chrX 146595275 146595983 -16003947 + L1PA10 LINE L1 4697 5416 -752 12476 24 3 0 chrX 146595983 146598220 -16001710 - L1PA3 LINE L1 -3 6152 3912 5505 115 32 49 chrX 146598220 146599009 -16000921 + L1PA10 LINE L1 5416 6168 0 255 363 32 0 chrX 146599016 146599140 -16000790 + MIR SINE MIR 125 252 -10 232 163 0 23 chrX 146599110 146599153 -16000777 + L2 LINE L2 3268 3309 -4 * 584 289 44 40 chrX 146599514 146599763 -16000167 - MIR SINE MIR -2 260 11 372 43 0 0 chrX 146600407 146600453 -15999477 + (CA)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chrX 146600490 146600512 -15999418 + AT_rich Low_complexity Low_complexity 1 22 0 1345 217 28 70 chrX 146600648 146600767 -15999163 - MLT1A2 LTR MaLR 0 374 252 2212 104 0 7 chrX 146600767 146601065 -15998865 + AluSx SINE Alu 1 296 -16 1345 217 28 70 chrX 146601065 146601178 -15998752 - MLT1A2 LTR MaLR -122 252 136 2151 116 0 23 chrX 146601178 146601481 -15998449 - AluSg SINE Alu -14 296 1 1345 217 28 70 chrX 146601481 146601634 -15998296 - MLT1A2 LTR MaLR -238 136 4 258 298 116 16 chrX 146601864 146601985 -15997945 + MIR3 SINE MIR 9 141 -67 233 313 38 0 chrX 146602030 146602110 -15997820 - MER81 DNA DNA -6 108 26 2241 100 3 3 chrX 146603389 146603688 -15996242 - AluY SINE Alu -12 299 1 748 157 13 13 chrX 146604086 146604239 -15995691 + L1MA7 LINE L1 6136 6288 -3 25 31 0 0 chrX 146604357 146604389 -15995541 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chrX 146604398 146604421 -15995509 + AT_rich Low_complexity Low_complexity 1 23 0 2030 115 14 3 chrX 146605093 146605379 -15994551 - AluSg SINE Alu -20 290 2 258 0 30 0 chrX 146606652 146606685 -15993245 + (TTTTG)n Simple_repeat Simple_repeat 3 175 0 1021 153 0 0 chrX 146606685 146606849 -15993081 - AluSg/x SINE Alu -17 295 133 686 153 112 18 chrX 146606938 146607108 -15992822 - MER53 DNA DNA -1 188 3 648 314 69 6 chrX 146607143 146607571 -15992359 - L1ME LINE L1 -519 5720 5263 591 292 30 61 chrX 146607725 146607964 -15991966 - L1ME LINE L1 -3378 2837 2592 2126 97 0 69 chrX 146607964 146608284 -15991646 + AluSx SINE Alu 3 300 -12 591 292 30 61 chrX 146608284 146608605 -15991325 - L1ME LINE L1 -3623 2592 2294 223 315 24 0 chrX 146608669 146608834 -15991096 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 466 328 11 11 chrX 146608849 146609023 -15990907 + (CATATA)n Simple_repeat Simple_repeat 1 174 0 453 366 0 0 chrX 146609013 146609270 -15990660 + (TATATG)n Simple_repeat Simple_repeat 1 257 0 * 246 318 23 0 chrX 146609282 146609370 -15990560 + L1MC4 LINE L1 6614 6703 -1339 471 281 0 0 chrX 146609372 146609623 -15990307 + (TATATG)n Simple_repeat Simple_repeat 1 251 0 553 162 9 0 chrX 146609662 146609767 -15990163 - L1MA6 LINE L1 0 6300 6195 332 342 26 21 chrX 146609769 146609962 -15989968 - L1ME LINE L1 -4162 2234 2041 302 322 23 0 chrX 146610395 146610482 -15989448 - MIR SINE MIR -133 129 41 351 78 0 0 chrX 146610518 146610569 -15989361 + (CA)n Simple_repeat Simple_repeat 2 52 0 432 317 8 0 chrX 146611346 146611466 -15988464 + L2 LINE L2 3189 3309 -4 2375 93 0 0 chrX 146612782 146613094 -15986836 + AluSx SINE Alu 1 312 0 616 144 101 7 chrX 146613350 146613489 -15986441 + MER96B DNA MER1_type? 88 239 -178 346 362 107 8 chrX 146613697 146614051 -15985879 - L1M4 LINE L1 -3628 2518 2130 573 229 0 0 chrX 146614223 146614335 -15985595 + L1M4 LINE L1 4915 5029 -1117 594 134 87 0 chrX 146614335 146614457 -15985473 + L1MB7 LINE L1 6047 6184 0 469 68 0 0 chrX 146615409 146615483 -15984447 - Alu SINE Alu 0 311 238 2126 67 4 0 chrX 146615483 146615753 -15984177 - AluY SINE Alu -40 271 1 225 0 0 0 chrX 146615905 146615930 -15984000 + (CA)n Simple_repeat Simple_repeat 1 25 0 489 257 95 14 chrX 146616694 146616842 -15983088 - MIR SINE MIR -42 220 61 21 36 0 0 chrX 146617988 146618016 -15981914 + AT_rich Low_complexity Low_complexity 1 28 0 1242 244 62 3 chrX 146619360 146619667 -15980263 - MER58B DNA MER1_type -2 339 15 285 361 150 6 chrX 146619887 146620067 -15979863 + MIR SINE MIR 24 229 -33 2304 109 0 0 chrX 146620588 146620900 -15979030 + AluSx SINE Alu 1 312 0 22 56 0 0 chrX 146621039 146621075 -15978855 + AT_rich Low_complexity Low_complexity 1 36 0 1251 45 0 0 chrX 146621221 146621376 -15978554 - L1PA2 LINE L1 -1 6154 6000 252 59 0 0 chrX 146621755 146621789 -15978141 + (GA)n Simple_repeat Simple_repeat 1 34 0 751 144 0 8 chrX 146622154 146622286 -15977644 + L1MA4 LINE L1 5543 5673 -627 1226 189 9 9 chrX 146622288 146622505 -15977425 + AluJb SINE Alu 68 284 -28 3403 140 9 40 chrX 146622505 146622944 -15976986 + L1MA4 LINE L1 5672 6086 -214 1787 164 0 7 chrX 146622944 146623231 -15976699 + AluJb SINE Alu 1 285 -27 3403 140 9 40 chrX 146623231 146623439 -15976491 + L1MA4 LINE L1 6086 6299 -1 1251 273 139 21 chrX 146624049 146624851 -15975079 - L1MEc LINE L1 -3126 3089 2195 325 238 0 60 chrX 146624858 146624941 -15974989 + Tigger5 DNA MER2_type 1 78 -2245 368 169 0 0 chrX 146624941 146625000 -15974930 - Tigger5 DNA MER2_type -3 2320 2262 243 88 0 0 chrX 146625002 146625036 -15974894 + (TA)n Simple_repeat Simple_repeat 1 34 0 254 316 34 51 chrX 146625685 146625802 -15974128 - L2 LINE L2 -5 3308 3194 307 159 0 0 chrX 146625802 146625846 -15974084 - LTR33 LTR ERVL 0 521 478 * 794 303 80 9 chrX 146625843 146626162 -15973768 - LTR33 LTR ERVL -152 369 7 390 254 78 88 chrX 146626394 146626678 -15973252 - L1MC5 LINE L1 -37 7924 7644 518 285 37 10 chrX 146626770 146627036 -15972894 - L1MC5 LINE L1 -516 7475 7256 788 273 47 24 chrX 146627055 146627430 -15972500 - L1MC4 LINE L1 -742 7219 6876 396 323 56 37 chrX 146628494 146628655 -15971275 - MIR3 SINE MIR -28 180 17 191 296 19 0 chrX 146628720 146628774 -15971156 - MIR3 SINE MIR -3 205 151 242 273 45 91 chrX 146628816 146628926 -15971004 - MER5B DNA MER1_type -72 106 2 306 342 26 49 chrX 146630146 146630359 -15969571 + MIR SINE MIR 2 206 -56 246 296 53 11 chrX 146630937 146631109 -15968821 + L1MC/D LINE L1 5308 5490 -631 2487 64 0 6 chrX 146631386 146631697 -15968233 + AluY SINE Alu 1 309 -2 24 53 0 0 chrX 146631894 146631932 -15967998 + AT_rich Low_complexity Low_complexity 1 38 0 264 264 86 32 chrX 146632390 146632541 -15967389 + MIR3 SINE MIR 10 164 -65 386 436 23 0 chrX 146632953 146633125 -15966805 + L2 LINE L2 3076 3251 -21 197 250 0 42 chrX 146633093 146633141 -15966789 + MIR SINE MIR 216 261 -1 * 261 0 0 0 chrX 146633141 146633170 -15966760 + (CA)n Simple_repeat Simple_repeat 2 30 0 191 36 36 0 chrX 146633169 146633197 -15966733 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 183 313 0 0 chrX 146633236 146633284 -15966646 + L2 LINE L2 3248 3295 -18 219 146 0 0 chrX 146634229 146634270 -15965660 + (TG)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chrX 146634273 146634294 -15965636 + (GA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chrX 146634294 146634316 -15965614 + AT_rich Low_complexity Low_complexity 1 22 0 3813 88 14 12 chrX 146634404 146634981 -15964949 - L1MA1 LINE L1 0 7721 7144 2253 89 22 0 chrX 146634985 146635299 -15964631 + L1MA1 LINE L1 5587 5907 -395 * 2945 123 3 7 chrX 146635288 146635809 -15964121 - L1MA1 LINE L1 -597 7124 6607 * 6360 179 13 2 chrX 146635777 146636986 -15962944 - L1MA1 LINE L1 -1637 5928 4706 13462 161 47 4 chrX 146636991 146639410 -15960520 - L1MA1 LINE L1 -4305 3260 737 389 108 82 0 chrX 146639492 146639650 -15960280 + (TA)n Simple_repeat Simple_repeat 2 172 0 209 146 37 12 chrX 146639675 146639757 -15960173 + (TA)n Simple_repeat Simple_repeat 1 84 0 423 139 72 0 chrX 146639876 146640042 -15959888 + (TA)n Simple_repeat Simple_repeat 2 179 0 23 0 0 0 chrX 146640046 146640069 -15959861 + AT_rich Low_complexity Low_complexity 1 23 0 381 76 76 29 chrX 146640100 146640271 -15959659 + (TA)n Simple_repeat Simple_repeat 2 180 0 34 42 0 0 chrX 146640271 146640319 -15959611 + AT_rich Low_complexity Low_complexity 1 48 0 392 57 114 6 chrX 146640340 146640498 -15959432 + (TA)n Simple_repeat Simple_repeat 2 176 0 228 94 38 38 chrX 146640500 146640553 -15959377 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 467 88 53 41 chrX 146640568 146640738 -15959192 + (TATAA)n Simple_repeat Simple_repeat 3 174 0 260 112 60 26 chrX 146640753 146640869 -15959061 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 228 191 80 31 chrX 146640887 146641049 -15958881 + (CATA)n Simple_repeat Simple_repeat 2 171 0 25 0 0 0 chrX 146641062 146641087 -15958843 + AT_rich Low_complexity Low_complexity 1 25 0 208 97 97 10 chrX 146641093 146641196 -15958734 + (TA)n Simple_repeat Simple_repeat 2 113 0 237 186 109 0 chrX 146641630 146641786 -15958144 + (TA)n Simple_repeat Simple_repeat 2 174 0 387 139 57 44 chrX 146641831 146641989 -15957941 + (CATATA)n Simple_repeat Simple_repeat 2 161 0 458 113 57 0 chrX 146642009 146642133 -15957797 + (TA)n Simple_repeat Simple_repeat 2 132 0 242 268 0 0 chrX 146642300 146642382 -15957548 + (TA)n Simple_repeat Simple_repeat 1 82 0 280 370 78 7 chrX 146642971 146643125 -15956805 - L2 LINE L2 0 3272 3108 335 183 0 130 chrX 146643405 146643520 -15956410 + L1MC4 LINE L1 6604 6703 -1339 531 0 0 0 chrX 146643522 146643581 -15956349 + (GA)n Simple_repeat Simple_repeat 2 60 0 329 81 58 64 chrX 146644103 146644276 -15955654 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 639 252 7 32 chrX 146645155 146645317 -15954613 - MIR SINE MIR -49 159 5 1135 43 0 0 chrX 146647101 146647240 -15952690 + L1PA6 LINE L1 6011 6149 -5 2295 85 3 0 chrX 146649083 146649378 -15950552 - AluSp SINE Alu -17 296 1 32347 35 1 2 chrX 146649995 146654734 -15945196 - L1PA4 LINE L1 0 6155 1422 32 26 0 0 chrX 146654876 146654915 -15945015 + AT_rich Low_complexity Low_complexity 1 39 0 243 234 0 0 chrX 146654938 146654985 -15944945 + (TG)n Simple_repeat Simple_repeat 1 47 0 2417 227 56 22 chrX 146655060 146655651 -15944279 + MLT1E3 LTR MaLR 5 615 -9 433 176 0 0 chrX 146655679 146655753 -15944177 - FLAM_A SINE Alu -22 120 47 219 322 9 61 chrX 146655977 146656092 -15943838 + L2 LINE L2 2945 3053 -219 180 152 0 0 chrX 146656272 146656305 -15943625 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 189 74 0 0 chrX 146656655 146656682 -15943248 + (CTAG)n Simple_repeat Simple_repeat 2 28 0 183 129 0 0 chrX 146657485 146657516 -15942414 + (TG)n Simple_repeat Simple_repeat 1 31 0 26 30 0 0 chrX 146657567 146657600 -15942330 + AT_rich Low_complexity Low_complexity 1 33 0 610 255 153 48 chrX 146657937 146658290 -15941640 - L2 LINE L2 0 3313 2924 17622 174 29 24 chrX 146658686 146662770 -15937160 - L1MA1 LINE L1 -3 7718 3653 2313 95 7 0 chrX 146662770 146663066 -15936864 - AluSc SINE Alu -9 300 3 17622 174 29 24 chrX 146663066 146663168 -15936762 - L1MA1 LINE L1 -4068 3653 3553 504 151 0 0 chrX 146663168 146663254 -15936676 - L1MA1 LINE L1 -1 6301 6216 17622 174 29 24 chrX 146663254 146666548 -15933382 - L1MA1 LINE L1 -4168 3553 176 333 324 59 37 chrX 146666843 146666979 -15932951 - L2 LINE L2 0 3272 3134 216 0 0 0 chrX 146667123 146667147 -15932783 + (T)n Simple_repeat Simple_repeat 1 24 0 248 296 153 10 chrX 146667201 146667299 -15932631 + MIR SINE MIR 117 228 -34 476 283 5 65 chrX 146668033 146668217 -15931713 + MIR SINE MIR 1 173 -89 450 36 0 0 chrX 146668514 146668570 -15931360 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 633 303 83 9 chrX 146668872 146669100 -15930830 + MIR SINE MIR 10 254 -8 11743 223 79 70 chrX 146670193 146674310 -15925620 - MER66B-int LTR ERV1 -2453 4223 70 27 29 0 0 chrX 146674318 146674352 -15925578 + AT_rich Low_complexity Low_complexity 1 34 0 405 82 0 0 chrX 146674352 146674413 -15925517 - L1PB1 LINE L1 -1 6150 6090 6786 34 0 0 chrX 146674423 146675219 -15924711 - L1PA5 LINE L1 -7 6147 5352 207 0 0 0 chrX 146675219 146675242 -15924688 + (T)n Simple_repeat Simple_repeat 1 23 0 7916 12 0 0 chrX 146675247 146676493 -15923437 - L1PA2 LINE L1 -1 6154 4909 2793 181 4 4 chrX 146676575 146677061 -15922869 - MER66B LTR ERV1 0 486 1 2885 298 63 62 chrX 146677061 146677917 -15922013 + L2 LINE L2 1510 2363 -950 1295 126 0 0 chrX 146677917 146678123 -15921807 + L1MA1 LINE L1 6097 6302 0 2885 298 63 62 chrX 146678123 146679064 -15920866 + L2 LINE L2 2363 3313 0 359 260 133 12 chrX 146679243 146679416 -15920514 - L1ME LINE L1 -345 5776 5583 327 227 10 168 chrX 146679493 146679784 -15920146 - L2 LINE L2 -74 3239 2995 348 24 0 0 chrX 146680145 146680186 -15919744 + (CA)n Simple_repeat Simple_repeat 1 41 0 1772 202 70 45 chrX 146680438 146680817 -15919113 + MLT1C LTR MaLR 11 404 -63 2260 79 7 3 chrX 146680817 146681109 -15918821 + AluSc SINE Alu 1 293 -16 1772 202 70 45 chrX 146681109 146681175 -15918755 + MLT1C LTR MaLR 404 467 0 45 75 0 0 chrX 146681176 146681270 -15918660 + AT_rich Low_complexity Low_complexity 1 94 0 744 243 3 53 chrX 146681329 146681628 -15918302 - MSTD LTR MaLR -48 348 3 311 279 264 0 chrX 146681628 146681768 -15918162 - L2 LINE L2 -129 3184 3008 387 100 17 0 chrX 146681813 146681873 -15918057 + MLT1D LTR MaLR 443 503 -2 340 323 182 45 chrX 146682122 146682567 -15917363 + L2 LINE L2 2798 3302 -11 205 171 0 0 chrX 146682701 146682736 -15917194 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 23 33 0 0 chrX 146682945 146682975 -15916955 + AT_rich Low_complexity Low_complexity 1 30 0 450 335 34 59 chrX 146683181 146683611 -15916319 - L2 LINE L2 -196 3117 2672 313 386 26 0 chrX 146683844 146684033 -15915897 - L1M4 LINE L1 -1899 4247 4054 577 275 150 0 chrX 146684034 146684227 -15915703 + MLT1J LTR MaLR 3 224 -287 220 346 28 19 chrX 146684679 146684786 -15915144 - MIR SINE MIR -77 185 78 182 296 49 25 chrX 146685428 146685509 -15914421 + MER5A DNA MER1_type 57 139 -50 305 364 17 46 chrX 146686578 146686817 -15913113 + MIR SINE MIR 24 255 -7 888 175 26 90 chrX 146686945 146687179 -15912751 - MER20 DNA MER1_type 0 219 1 1485 333 36 24 chrX 146687653 146688595 -15911335 - L1PBa LINE L1 -5908 955 3 1488 222 29 36 chrX 146688614 146689060 -15910870 - L1M2 LINE L1 -4535 2314 1872 363 320 27 88 chrX 146689064 146689211 -15910719 - L1M2 LINE L1 -6048 801 664 229 284 30 0 chrX 146689276 146689343 -15910587 - L1M2 LINE L1 -6361 488 420 2477 228 11 2 chrX 146689634 146690108 -15909822 - L1M2 LINE L1 -6359 490 13 22 70 0 0 chrX 146690121 146690164 -15909766 + AT_rich Low_complexity Low_complexity 1 43 0 943 241 9 14 chrX 146690518 146690738 -15909192 + MER20 DNA MER1_type 1 219 0 203 130 43 0 chrX 146691542 146691588 -15908342 + A-rich Low_complexity Low_complexity 1 48 0 184 310 58 11 chrX 146691640 146691727 -15908203 + L2 LINE L2 1589 1679 -1635 21 0 0 0 chrX 146691727 146691748 -15908182 + AT_rich Low_complexity Low_complexity 1 21 0 217 388 29 15 chrX 146691808 146692014 -15907916 + L2 LINE L2 1716 1924 -1390 433 302 131 29 chrX 146692031 146692151 -15907779 + L2 LINE L2 3008 3114 -199 820 135 43 0 chrX 146692151 146692292 -15907638 + L1PA15 LINE L1 6019 6165 0 433 302 131 29 chrX 146692292 146692446 -15907484 + L2 LINE L2 3114 3310 -3 33 66 0 0 chrX 146692891 146692952 -15906978 + AT_rich Low_complexity Low_complexity 1 61 0 212 291 0 0 chrX 146693472 146693527 -15906403 - MIR SINE MIR -102 106 52 239 322 22 11 chrX 146694621 146694711 -15905219 - L1ME3A LINE L1 -112 6058 5968 310 352 43 14 chrX 146694785 146694995 -15904935 - L1ME3A LINE L1 -213 5949 5734 233 302 21 10 chrX 146694995 146695091 -15904839 - HAL1 LINE L1 -835 1672 1576 448 283 57 18 chrX 146695114 146695497 -15904433 - L1MEd LINE L1 -4862 1257 1009 433 304 73 45 chrX 146696545 146696765 -15903165 + MIR SINE MIR 7 232 -30 23 0 0 0 chrX 146696969 146696992 -15902938 + AT_rich Low_complexity Low_complexity 1 23 0 270 324 86 0 chrX 146697667 146697806 -15902124 + MIR SINE MIR 106 256 -6 1454 222 32 6 chrX 146698273 146698746 -15901184 + L1M4 LINE L1 2781 3265 -2881 230 116 0 70 chrX 146698762 146698805 -15901125 - MLT2D LTR ERVL -5 409 370 269 255 0 11 chrX 146698813 146698907 -15901023 + (TA)n Simple_repeat Simple_repeat 1 93 0 5006 187 37 66 chrX 146698969 146701145 -15898785 + L1PA16 LINE L1 4071 6157 -9 1414 252 29 6 chrX 146701146 146701491 -15898439 - MLT2D LTR ERVL -61 353 1 850 261 27 12 chrX 146701492 146701829 -15898101 + L1M4 LINE L1 3273 3614 -2532 34 0 0 0 chrX 146702100 146702134 -15897796 + AT_rich Low_complexity Low_complexity 1 34 0 925 255 26 4 chrX 146702249 146702480 -15897450 - L1MB7 LINE L1 -17 6167 5932 * 4682 225 53 26 chrX 146702464 146703873 -15896057 - L1MB7 LINE L1 -1254 4892 3445 283 288 115 36 chrX 146703895 146704034 -15895896 - MIR SINE MIR -88 174 25 356 336 84 26 chrX 146705069 146705150 -15894780 - L2 LINE L2 -212 3060 2985 1792 148 8 59 chrX 146705150 146705522 -15894408 + THE1A LTR MaLR 1 353 -2 356 336 84 26 chrX 146705522 146705666 -15894264 - L2 LINE L2 -287 2985 2822 554 129 79 0 chrX 146707233 146707334 -15892596 - L1MA5 LINE L1 -2 6298 6190 1700 141 32 4 chrX 146707330 146707607 -15892323 + L1MA5 LINE L1 5649 5933 -367 783 333 79 12 chrX 146708199 146708730 -15891200 + L2 LINE L2 2747 3313 0 194 170 0 21 chrX 146709528 146709575 -15890355 + (TATG)n Simple_repeat Simple_repeat 3 48 0 289 310 81 18 chrX 146709705 146710235 -15889695 - L1ME LINE L1 -297 5824 5298 903 292 38 19 chrX 146710319 146710692 -15889238 + L1MDa LINE L1 19 398 -6142 2884 199 14 9 chrX 146711113 146711697 -15888233 + L1MB3 LINE L1 5546 6132 -51 343 116 4 4 chrX 146711692 146711751 -15888179 + L1PB1 LINE L1 5824 5868 -283 * 5515 171 25 23 chrX 146711985 146713853 -15886077 + L1MA4A LINE L1 4434 6299 -4 25 0 0 0 chrX 146713937 146713962 -15885968 + AT_rich Low_complexity Low_complexity 1 25 0 1854 205 45 26 chrX 146713971 146714641 -15885289 + L1MC2 LINE L1 5282 6343 -1 339 263 68 25 chrX 146714665 146714783 -15885147 + L1ME1 LINE L1 5903 6025 -141 * 1225 271 50 66 chrX 146714779 146714959 -15884971 - L1ME1 LINE L1 -310 5856 5675 897 142 0 8 chrX 146714959 146715093 -15884837 + FLAM_C SINE Alu 1 133 0 1225 271 50 66 chrX 146715093 146715215 -15884715 - L1ME1 LINE L1 -491 5675 5553 2456 99 3 0 chrX 146715215 146715557 -15884373 + L1PA13 LINE L1 5821 6163 0 1225 271 50 66 chrX 146715557 146716113 -15883817 - L1ME1 LINE L1 -613 5553 5010 451 263 50 50 chrX 146716895 146717195 -15882735 - L1M4 LINE L1 -972 5174 4875 * 502 304 79 16 chrX 146717164 146717417 -15882513 + L1ME LINE L1 5438 5706 -464 372 262 34 20 chrX 146717821 146717970 -15881960 - L1M4 LINE L1 -1254 4892 4742 369 169 0 0 chrX 146717970 146718035 -15881895 - LTR19A LTR ERV1 0 486 422 2006 90 48 69 chrX 146718035 146718370 -15881560 + LTR19B LTR ERV1 195 522 -58 13932 177 34 46 chrX 146718379 146718603 -15881327 - LTR19B-int LTR ERV1 -525 6893 6668 2356 65 0 7 chrX 146718603 146718896 -15881034 + AluY SINE Alu 1 291 -20 13932 177 34 46 chrX 146718896 146719598 -15880332 - LTR19B-int LTR ERV1 -750 6668 5959 2288 75 0 23 chrX 146719598 146719946 -15879984 - AluY SINE Alu 0 311 1 13932 177 34 46 chrX 146719946 146723780 -15876150 - LTR19B-int LTR ERV1 -1459 5959 1 3923 120 26 21 chrX 146723780 146724357 -15875573 - LTR19B LTR ERV1 0 580 1 2504 235 61 28 chrX 146724424 146725543 -15874387 + L1MC3 LINE L1 4422 5578 -744 237 301 48 30 chrX 146725639 146725805 -15874125 + L1MC3 LINE L1 5991 6159 -1626 287 354 65 5 chrX 146725827 146726042 -15873888 - L2 LINE L2 -627 2687 2460 475 256 63 121 chrX 146727466 146728513 -15871417 - L1ME1 LINE L1 -1162 4984 3999 1809 241 32 44 chrX 146728543 146729161 -15870769 - L1MC3 LINE L1 -9 7776 7166 321 335 0 12 chrX 146730230 146730394 -15869536 + GA-rich Low_complexity Low_complexity 2 163 0 486 196 0 0 chrX 146731855 146731967 -15867963 + CT-rich Low_complexity Low_complexity 2 113 0 21 0 0 0 chrX 146733108 146733129 -15866801 + AT_rich Low_complexity Low_complexity 1 21 0 3533 64 13 9 chrX 146734841 146735292 -15864638 + MLT2A2 LTR ERVL 1 453 0 3501 78 7 0 chrX 146735292 146735741 -15864189 + HERVL-A2 LTR ERVL 1 452 -5202 * 37327 78 11 12 chrX 146735739 146736147 -15863783 + HERVL-A2 LTR ERVL 726 1133 -4521 2560 76 0 0 chrX 146736147 146736451 -15863479 + AluSg1 SINE Alu 1 304 -5 37327 78 11 12 chrX 146736451 146740881 -15859049 + HERVL-A2 LTR ERVL 1133 5558 -96 590 41 0 0 chrX 146740885 146740958 -15858972 + MLT2A2 LTR ERVL 381 453 0 2134 118 0 13 chrX 146740967 146741271 -15858659 - AluSx SINE Alu -12 300 1 265 255 71 66 chrX 146741654 146741715 -15858215 + MLT1J1 LTR MaLR 270 329 -117 1552 186 88 19 chrX 146741715 146742080 -15857850 - MLT1B LTR MaLR 0 390 1 265 255 71 66 chrX 146742080 146742199 -15857731 + MLT1J1 LTR MaLR 329 446 0 328 278 0 37 chrX 146742431 146742539 -15857391 - L1MC4 LINE L1 -1339 6703 6600 1373 208 43 75 chrX 146742581 146742980 -15856950 + MLT1B LTR MaLR 5 390 0 30 27 0 0 chrX 146743324 146743361 -15856569 + AT_rich Low_complexity Low_complexity 1 37 0 232 242 0 32 chrX 146743439 146743501 -15856429 + L1MC2 LINE L1 5050 5109 -1037 1010 255 18 9 chrX 146743531 146744009 -15855921 + L1MC2 LINE L1 5066 5546 -743 1542 233 15 73 chrX 146744010 146744405 -15855525 + L1MC2 LINE L1 5843 6201 -143 342 45 0 0 chrX 146744405 146744449 -15855481 + (TG)n Simple_repeat Simple_repeat 1 44 0 1542 233 15 73 chrX 146744449 146744585 -15855345 + L1MC2 LINE L1 6201 6343 -1 743 245 14 14 chrX 146744600 146744816 -15855114 + L1MC3 LINE L1 5354 5569 -2216 325 310 61 35 chrX 146744840 146745069 -15854861 + L1MC3 LINE L1 5921 6155 -1630 47 44 0 0 chrX 146745069 146745137 -15854793 + AT_rich Low_complexity Low_complexity 1 68 0 301 305 6 28 chrX 146745572 146745749 -15854181 + GA-rich Low_complexity Low_complexity 1 173 0 300 364 9 25 chrX 146745718 146745981 -15853949 + G-rich Low_complexity Low_complexity 1 258 0 * 211 109 0 43 chrX 146746481 146746527 -15853403 + (AGGGGG)n Simple_repeat Simple_repeat 2 45 0 186 254 0 0 chrX 146747530 146747597 -15852333 + CT-rich Low_complexity Low_complexity 2 68 0 442 329 70 0 chrX 146750076 146750289 -15849641 - MIR SINE MIR -1 261 34 1831 194 23 13 chrX 146751969 146752355 -15847575 - MLT1B LTR MaLR 0 390 1 285 283 150 0 chrX 146752792 146752905 -15847025 + MLT1B LTR MaLR 1 130 -260 1689 218 29 11 chrX 146752941 146753386 -15846544 - L1MC3 LINE L1 -167 7618 7166 24 0 0 0 chrX 146754516 146754540 -15845390 + GC_rich Low_complexity Low_complexity 1 24 0 307 305 0 0 chrX 146756070 146756152 -15843778 + CT-rich Low_complexity Low_complexity 2 83 0 298 300 46 90 chrX 146761121 146761374 -15838556 - MIR SINE MIR -1 261 11 1586 216 29 13 chrX 146762942 146763326 -15836604 - MLT1B LTR MaLR 0 390 1 250 261 0 0 chrX 146763674 146763739 -15836191 + (TA)n Simple_repeat Simple_repeat 2 66 0 925 226 36 92 chrX 146763805 146764141 -15835789 + MLT1B LTR MaLR 64 380 -10 313 340 84 59 chrX 146764152 146764593 -15835337 - L1MC4a LINE L1 -1931 5877 5426 873 252 31 16 chrX 146764644 146764984 -15834946 + L1MC2 LINE L1 5050 5402 -919 1558 172 78 36 chrX 146764984 146765344 -15834586 + THE1C LTR MaLR 1 375 0 873 252 31 16 chrX 146765344 146765492 -15834438 + L1MC2 LINE L1 5402 5546 -775 1609 222 24 54 chrX 146765493 146765891 -15834039 + L1MC2 LINE L1 5843 6224 -120 306 87 0 0 chrX 146765891 146765937 -15833993 + (TG)n Simple_repeat Simple_repeat 1 46 0 1609 222 24 54 chrX 146765937 146766042 -15833888 + L1MC2 LINE L1 6224 6331 -13 746 239 71 13 chrX 146766048 146766296 -15833634 + L1MC3 LINE L1 5317 5581 -753 281 304 66 26 chrX 146766312 146766539 -15833391 + L1MC3 LINE L1 5924 6159 -1626 2011 108 23 0 chrX 146766539 146766845 -15833085 - L1PA13 LINE L1 -7 6156 5844 348 360 34 0 chrX 146766864 146767042 -15832888 - L2 LINE L2 -668 2646 2463 314 284 77 50 chrX 146768477 146768815 -15831115 - L1M4 LINE L1 -1161 4985 4639 690 286 0 35 chrX 146768869 146769068 -15830862 - MLT1B-int LTR MaLR -322 1329 1138 897 142 0 0 chrX 146769071 146769205 -15830725 + L1P4 LINE L1 5538 5671 -495 626 141 0 0 chrX 146769223 146769322 -15830608 + L1MD1 LINE L1 6044 6142 -100 191 371 79 0 chrX 146770211 146770300 -15829630 + L2 LINE L2 3160 3255 -17 265 286 89 27 chrX 146770356 146770468 -15829462 - MIR SINE MIR -58 150 32 24 32 0 0 chrX 146770573 146770604 -15829326 + AT_rich Low_complexity Low_complexity 1 31 0 824 152 35 0 chrX 146770609 146770754 -15829176 - L1MA3 LINE L1 -7 6298 6149 279 0 0 0 chrX 146771558 146771589 -15828341 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1780 137 156 0 chrX 146772630 146772945 -15826985 + THE1B LTR MaLR 1 364 0 1150 297 24 6 chrX 146773535 146773872 -15826058 + LTR16C LTR ERVL 149 491 0 214 230 40 14 chrX 146774084 146774158 -15825772 + L2 LINE L2 2205 2280 -1034 284 304 27 36 chrX 146774784 146774896 -15825034 - MIR3 SINE MIR -54 154 44 507 280 51 17 chrX 146775158 146775333 -15824597 - MIR SINE MIR -8 254 74 19769 171 21 12 chrX 146775680 146783259 -15816671 - L1MA2 LINE L1 0 7723 73 366 237 69 52 chrX 146783617 146783790 -15816140 + MER5B DNA MER1_type 2 177 -1 468 322 98 8 chrX 146784085 146784321 -15815609 - MIR SINE MIR -3 259 3 541 303 0 29 chrX 146784649 146784824 -15815106 - MER5B DNA MER1_type -8 170 1 2721 128 16 12 chrX 146785025 146785448 -15814482 + MER61B LTR ERV1 1 425 0 904 193 29 74 chrX 146785448 146785691 -15814239 + MER61B-int LTR ERV1 1 232 -4985 * 27371 103 13 21 chrX 146785669 146785720 -15814210 + MER61B-int LTR ERV1 344 394 -4823 2323 93 0 10 chrX 146785720 146786032 -15813898 + AluSg SINE Alu 1 309 -1 27371 103 13 21 chrX 146786032 146790171 -15809759 + MER61B-int LTR ERV1 394 4497 -720 662 251 121 20 chrX 146791053 146791252 -15808678 + MIR SINE MIR 18 236 -26 366 286 84 19 chrX 146791352 146791506 -15808424 - MER112 DNA MER1_type -9 251 88 396 40 0 0 chrX 146791510 146791560 -15808370 + (TG)n Simple_repeat Simple_repeat 1 50 0 770 124 0 0 chrX 146793083 146793196 -15806734 + MSTB LTR MaLR 1 113 -313 739 203 54 7 chrX 146793203 146793351 -15806579 + MSTB LTR MaLR 272 426 0 421 282 40 0 chrX 146793450 146793574 -15806356 + MIR SINE MIR 124 252 -10 249 248 198 41 chrX 146794360 146794481 -15805449 - MIR SINE MIR -6 256 117 254 362 72 7 chrX 146794662 146794800 -15805130 - L3b LINE CR1 -38 1545 1399 1279 233 57 0 chrX 146795104 146795421 -15804509 + MER58B DNA MER1_type 7 341 0 2660 190 11 46 chrX 146795724 146795992 -15803938 - MER44D DNA MER2_type -1882 605 329 2252 85 0 0 chrX 146795992 146796298 -15803632 + AluSc SINE Alu 1 306 0 2660 190 11 46 chrX 146796298 146796597 -15803333 - MER44D DNA MER2_type -2158 329 2 12955 207 66 46 chrX 146796721 146798004 -15801926 - L1MA8 LINE L1 -179 7072 5816 1830 142 29 0 chrX 146798004 146798336 -15801594 + AluSx SINE Alu 1 340 0 12955 207 66 46 chrX 146798336 146804273 -15795657 - L1MA8 LINE L1 -1435 5816 2 22 0 0 0 chrX 146804383 146804405 -15795525 + AT_rich Low_complexity Low_complexity 1 22 0 314 278 52 31 chrX 146804441 146804538 -15795392 - L2 LINE L2 -32 3240 3142 26 0 0 0 chrX 146804983 146805009 -15794921 + AT_rich Low_complexity Low_complexity 1 26 0 593 324 16 62 chrX 146805148 146805454 -15794476 - MLT1I LTR MaLR -23 386 95 377 230 0 0 chrX 146805563 146805637 -15794293 + MIR SINE MIR 43 116 -146 564 375 67 0 chrX 146806074 146806314 -15793616 - MIR SINE MIR -6 256 1 389 193 45 0 chrX 146807355 146807443 -15792487 + L1MC2 LINE L1 6243 6334 -10 1073 262 99 37 chrX 146807589 146807655 -15792275 - MLT1I LTR MaLR -2 407 347 486 251 203 5 chrX 146807655 146807842 -15792088 - MER58A DNA MER1_type 0 224 1 1073 262 99 37 chrX 146807842 146808157 -15791773 - MLT1I LTR MaLR -62 347 2 514 306 60 55 chrX 146808160 146808594 -15791336 + L1ME3A LINE L1 5504 5939 -231 2347 111 0 0 chrX 146808846 146809152 -15790778 + AluSg SINE Alu 5 310 0 305 82 20 0 chrX 146809430 146809479 -15790451 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 373 261 52 52 chrX 146809530 146809664 -15790266 + MIR SINE MIR 58 191 -71 185 355 88 83 chrX 146810732 146810960 -15788970 + L2 LINE L2 2998 3226 -46 4623 174 10 22 chrX 146811216 146812108 -15787822 - L1MC3 LINE L1 -172 7613 6733 2099 118 30 21 chrX 146813504 146813834 -15786096 + THE1B LTR MaLR 1 333 -31 2125 143 15 0 chrX 146813834 146814162 -15785768 - THE1B LTR MaLR 0 364 32 9327 117 32 41 chrX 146814163 146815639 -15784291 - THE1B-int LTR MaLR -116 1464 1 2638 113 3 0 chrX 146815639 146816002 -15783928 - THE1B LTR MaLR 0 364 1 10083 131 29 7 chrX 146816035 146817581 -15782349 + THE1B-int LTR MaLR 1 1580 0 2433 117 22 6 chrX 146817581 146817939 -15781991 + THE1B LTR MaLR 1 364 0 579 66 0 0 chrX 146818772 146818848 -15781082 + (TA)n Simple_repeat Simple_repeat 2 77 0 1760 115 0 27 chrX 146818849 146819110 -15780820 - AluSx SINE Alu -16 296 43 532 338 61 0 chrX 146819174 146819387 -15780543 + MIR SINE MIR 37 262 0 189 346 79 10 chrX 146819800 146819901 -15780029 + L2 LINE L2 3194 3301 -12 365 275 95 30 chrX 146819917 146820117 -15779813 - HAL1 LINE L1 0 2507 2295 34 0 0 0 chrX 146820118 146820152 -15779778 + AT_rich Low_complexity Low_complexity 1 34 0 433 94 0 0 chrX 146820152 146820216 -15779714 - L1MA1 LINE L1 0 6302 6239 404 150 0 0 chrX 146820216 146820276 -15779654 + L1M1 LINE L1 5497 5556 -746 3280 191 43 15 chrX 146820277 146821026 -15778904 - L1MA7 LINE L1 0 6291 5522 1260 264 110 43 chrX 146821068 146821761 -15778169 - HAL1 LINE L1 -293 2214 1476 1687 218 48 88 chrX 146821825 146822054 -15777876 + MLT1D LTR MaLR 1 238 -267 642 200 0 64 chrX 146822054 146822194 -15777736 - FLAM_C SINE Alu -2 131 1 1687 218 48 88 chrX 146822194 146822488 -15777442 + MLT1D LTR MaLR 238 503 -2 564 273 109 14 chrX 146822494 146822769 -15777161 - HAL1 LINE L1 -1088 1419 1119 67 25 0 0 chrX 146822786 146822867 -15777063 + AT_rich Low_complexity Low_complexity 1 81 0 482 254 173 45 chrX 146822906 146823241 -15776689 - HAL1 LINE L1 -1435 1072 695 518 286 70 73 chrX 146823274 146823659 -15776271 - HAL1 LINE L1 -2108 399 16 303 317 40 33 chrX 146823929 146824134 -15775796 - MIR SINE MIR -32 176 5 26 30 0 0 chrX 146824315 146824348 -15775582 + AT_rich Low_complexity Low_complexity 1 33 0 1367 289 63 19 chrX 146825037 146825846 -15774084 - L2 LINE L2 0 3313 2465 522 350 95 40 chrX 146825823 146826246 -15773684 + L3 LINE CR1 301 746 -831 * 2493 64 0 10 chrX 146826359 146826670 -15773260 + AluY SINE Alu 1 308 -3 31 68 0 0 chrX 146826948 146827007 -15772923 + AT_rich Low_complexity Low_complexity 1 59 0 15625 157 56 12 chrX 146827007 146831222 -15768708 - L1PB1 LINE L1 -1 6866 2261 2124 125 10 6 chrX 146831222 146831534 -15768396 - AluSq SINE Alu 0 313 1 15625 157 56 12 chrX 146831534 146833835 -15766095 - L1PB1 LINE L1 -4606 2261 63 2066 102 0 0 chrX 146833944 146834209 -15765721 + AluSc SINE Alu 45 309 0 2382 90 23 6 chrX 146834485 146834830 -15765100 + L1PA13 LINE L1 5810 6160 -3 180 0 0 0 chrX 146834868 146834888 -15765042 + (T)n Simple_repeat Simple_repeat 1 20 0 713 217 37 0 chrX 146835345 146835534 -15764396 - L1MA7 LINE L1 -5 6286 6091 528 233 44 0 chrX 146835534 146835654 -15764276 + MLT1F1 LTR MaLR 69 226 -369 537 206 50 83 chrX 146835664 146835844 -15764086 - L1MA7 LINE L1 -207 6084 5911 1675 130 76 68 chrX 146835844 146836214 -15763716 + THE1C LTR MaLR 1 373 -2 4427 138 18 60 chrX 146836214 146836579 -15763351 + THE1C-int LTR MaLR 5 384 -1196 6918 68 6 14 chrX 146836579 146837858 -15762072 - L1PA8 LINE L1 -1 6171 4896 4427 138 18 60 chrX 146837858 146838327 -15761603 + THE1C-int LTR MaLR 384 804 -776 1216 100 30 30 chrX 146838334 146838534 -15761396 + THE1C-int LTR MaLR 1381 1580 0 1610 148 203 11 chrX 146838534 146838893 -15761037 + MSTA LTR MaLR 1 428 0 3530 163 18 19 chrX 146838901 146839800 -15760130 - L1MA7 LINE L1 -396 5895 5000 1147 257 141 51 chrX 146839841 146840357 -15759573 + MLT1F1 LTR MaLR 10 567 0 480 202 21 0 chrX 146840707 146840801 -15759129 + MLT1J2 LTR MaLR 68 163 -287 225 351 46 103 chrX 146841513 146841815 -15758115 - L2 LINE L2 -20 3252 2968 945 117 0 7 chrX 146842215 146842360 -15757570 + THE1-int LTR MaLR 541 684 -896 399 340 70 11 chrX 146842392 146842577 -15757353 - L1ME LINE L1 -305 5816 5621 554 277 34 0 chrX 146842634 146842782 -15757148 + MIR SINE MIR 89 241 -21 1990 285 25 17 chrX 146842807 146843439 -15756491 - L2 LINE L2 -662 2652 2016 602 317 8 50 chrX 146843533 146843792 -15756138 + MIR SINE MIR 6 253 -9 404 316 115 10 chrX 146844074 146844283 -15755647 - MIR SINE MIR -31 231 1 273 326 75 41 chrX 146845390 146845537 -15754393 + MIR3 SINE MIR 9 160 -48 663 333 37 30 chrX 146845863 146846211 -15753719 - L2 LINE L2 -277 3036 2687 663 167 0 8 chrX 146846229 146846349 -15753581 + FLAM_A SINE Alu 20 138 -4 230 216 0 200 chrX 146846349 146846382 -15753548 - L2 LINE L2 -620 2694 2656 2011 107 53 0 chrX 146846382 146846663 -15753267 + AluSp SINE Alu 1 296 -17 230 216 0 200 chrX 146846663 146846754 -15753176 - L2 LINE L2 -658 2656 2595 1727 80 0 0 chrX 146847313 146847538 -15752392 - L1P3 LINE L1 -6229 232 8 228 86 0 0 chrX 146847823 146847858 -15752072 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 309 73 15 chrX 146848143 146848211 -15751719 + MIR3 SINE MIR 85 156 -52 195 332 89 53 chrX 146849726 146849916 -15750014 - MIR3 SINE MIR -3 205 9 898 331 108 65 chrX 146849986 146851026 -15748904 + L2 LINE L2 2203 3272 0 600 299 87 11 chrX 146851103 146851287 -15748643 + MIR SINE MIR 3 200 -62 1879 168 7 68 chrX 146851293 146851703 -15748227 + MLT1B LTR MaLR 6 390 0 694 255 67 28 chrX 146851751 146852033 -15747897 + L2 LINE L2 3019 3311 -2 289 313 62 16 chrX 146852105 146852233 -15747697 - L2 LINE L2 -18 3295 3162 431 261 78 9 chrX 146852790 146852905 -15747025 - MIR3 SINE MIR -13 195 73 2525 263 69 80 chrX 146854606 146855493 -15744437 - L1M4c LINE L1 -4016 2630 1735 338 0 0 0 chrX 146855493 146855536 -15744394 + L1PA2 LINE L1 6110 6152 -3 2525 263 69 80 chrX 146855536 146855687 -15744243 - L1M4c LINE L1 -4911 1735 1584 1866 107 3 45 chrX 146855687 146855996 -15743934 - L1MA2 LINE L1 0 6304 6009 2525 263 69 80 chrX 146855996 146856689 -15743241 - L1M4c LINE L1 -5062 1584 885 216 0 0 0 chrX 146856689 146856713 -15743217 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2525 263 69 80 chrX 146856713 146856872 -15743058 - L1M4c LINE L1 -5761 885 726 198 0 0 0 chrX 146856872 146856894 -15743036 + (CA)n Simple_repeat Simple_repeat 2 23 0 2525 263 69 80 chrX 146856894 146857587 -15742343 - L1M4c LINE L1 -5920 726 13 361 318 62 50 chrX 146858198 146858538 -15741392 + HAL1b LINE L1 256 599 -749 391 281 8 0 chrX 146858667 146858788 -15741142 - L1ME2 LINE L1 -2 6162 6041 8573 188 18 22 chrX 146858803 146860328 -15739602 - L1PA15 LINE L1 -21 6795 5296 2007 74 0 0 chrX 146860328 146860584 -15739346 - L1PA8 LINE L1 -17 6155 5900 8573 188 18 22 chrX 146860584 146862026 -15737904 - L1PA15 LINE L1 -1520 5296 3850 276 261 37 93 chrX 146862027 146862188 -15737742 - L1PA15 LINE L1 -5975 812 661 1849 146 31 55 chrX 146862194 146862578 -15737352 + THE1C LTR MaLR 1 375 0 1701 103 4 0 chrX 146862578 146862831 -15737099 + THE1C-int LTR MaLR 1 254 -1326 685 240 7 0 chrX 146862829 146862983 -15736947 - L1PA15 LINE L1 -6632 155 1 * 2493 266 82 39 chrX 146862993 146863748 -15736182 - L1ME2 LINE L1 -115 6049 5328 1960 143 4 0 chrX 146863748 146864027 -15735903 - AluSx SINE Alu -4 308 29 2493 266 82 39 chrX 146864027 146864909 -15735021 - L1ME2 LINE L1 -836 5328 4485 2333 38 42 17 chrX 146864909 146865196 -15734734 + AluY SINE Alu 1 294 -17 2493 266 82 39 chrX 146865196 146865652 -15734278 - L1ME2 LINE L1 -1679 4485 4050 468 0 0 0 chrX 146865652 146865704 -15734226 + (TA)n Simple_repeat Simple_repeat 2 53 0 2455 73 0 6 chrX 146865710 146866023 -15733907 - AluY SINE Alu 0 311 1 2493 266 82 39 chrX 146866023 146866184 -15733746 - L1ME2 LINE L1 -2118 4046 3684 728 194 37 11 chrX 146866362 146866553 -15733377 - L1M4 LINE L1 -1447 5401 5206 403 305 35 0 chrX 146866553 146866694 -15733236 + L1ME1 LINE L1 5485 5630 -612 968 248 26 16 chrX 146866696 146866999 -15732931 + L1ME1 LINE L1 5675 5980 -186 507 314 21 16 chrX 146867449 146867643 -15732287 + L2 LINE L2 2680 2874 -440 343 191 38 0 chrX 146868134 146868239 -15731691 - L1M4 LINE L1 -3991 2858 2750 412 243 139 28 chrX 146868246 146868390 -15731540 - MIR SINE MIR -56 206 47 320 305 21 28 chrX 146869952 146870093 -15729837 + L1ME LINE L1 5511 5650 -471 2216 118 7 0 chrX 146870336 146870642 -15729288 + AluSg1 SINE Alu 1 308 -1 2449 80 0 0 chrX 146870722 146871022 -15728908 - AluY SINE Alu -11 300 1 231 227 30 15 chrX 146871406 146871472 -15728458 + L2 LINE L2 2213 2279 -1035 733 283 82 0 chrX 146871498 146871731 -15728199 + L2 LINE L2 1772 2023 -1291 550 320 30 0 chrX 146871788 146871988 -15727942 + MLT1L LTR MaLR 410 615 0 729 273 127 14 chrX 146871988 146872263 -15727667 + L2 LINE L2 2231 2536 -778 1823 142 26 29 chrX 146872263 146872608 -15727322 - Tigger7 DNA MER2_type -1 2486 2143 739 226 204 22 chrX 146872606 146872836 -15727094 + Tigger7 DNA MER2_type 76 347 -2140 * 361 228 13 0 chrX 146872833 146872912 -15727018 - Tigger7 DNA MER2_type -2407 80 1 * 1281 166 59 7 chrX 146872981 146873011 -15726919 - L1 LINE L1 -1613 4533 4506 231 61 0 0 chrX 146873011 146873044 -15726886 + (TG)n Simple_repeat Simple_repeat 2 34 0 1281 166 59 7 chrX 146873044 146873320 -15726610 - L1 LINE L1 -1640 4506 4211 * 2871 175 31 1 chrX 146873311 146874222 -15725708 - L1M1 LINE L1 -541 7183 6246 1688 154 6 14 chrX 146874212 146874369 -15725561 - L1M1 LINE L1 -4385 3180 3023 * 2190 119 37 6 chrX 146874369 146874722 -15725208 - THE1B LTR MaLR 0 364 1 1688 154 6 14 chrX 146874722 146874915 -15725015 - L1M1 LINE L1 -4542 3023 2833 2163 147 89 5 chrX 146874915 146875310 -15724620 + MSTA LTR MaLR 1 428 0 7406 199 42 16 chrX 146875310 146876706 -15723224 + MSTA-int LTR MaLR 1 1360 -291 2237 162 8 11 chrX 146876706 146877082 -15722848 - THE1C LTR MaLR 0 375 1 9375 146 28 14 chrX 146877082 146878640 -15721290 - THE1C-int LTR MaLR 0 1580 1 2134 140 27 16 chrX 146878640 146879011 -15720919 - THE1C LTR MaLR 0 375 1 7406 199 42 16 chrX 146879011 146879222 -15720708 + MSTA-int LTR MaLR 1359 1651 0 2218 135 32 53 chrX 146879222 146879412 -15720518 + MSTA LTR MaLR 1 193 -235 2335 86 0 20 chrX 146879412 146879714 -15720216 + AluY SINE Alu 1 296 -15 2218 135 32 53 chrX 146879714 146879954 -15719976 + MSTA LTR MaLR 193 422 -6 5691 144 32 10 chrX 146879959 146880465 -15719465 - L1M1 LINE L1 -4727 2838 2345 1714 199 7 0 chrX 146880465 146880767 -15719163 - AluJb SINE Alu -6 306 3 5691 144 32 10 chrX 146880767 146881317 -15718613 - L1M1 LINE L1 -5220 2345 1759 595 120 19 9 chrX 146881320 146881428 -15718502 + CT-rich Low_complexity Low_complexity 1 109 0 200 42 0 0 chrX 146881428 146881452 -15718478 + (TCTCCC)n Simple_repeat Simple_repeat 3 26 0 8075 191 9 65 chrX 146881454 146883308 -15716622 - L1M1 LINE L1 -5799 1766 16 400 261 193 6 chrX 146883326 146883487 -15716443 + L2 LINE L2 3104 3294 -19 393 268 22 58 chrX 146883866 146884004 -15715926 + MER5B DNA MER1_type 1 133 -45 4415 177 14 31 chrX 146884386 146884482 -15715448 - L1MA7 LINE L1 -1 6290 6194 2323 122 3 37 chrX 146884482 146884859 -15715071 + THE1B LTR MaLR 1 364 0 4415 177 14 31 chrX 146884859 146884929 -15715001 - L1MA7 LINE L1 -97 6194 6124 1776 172 0 27 chrX 146884929 146885226 -15714704 + AluSx SINE Alu 1 289 -23 4415 177 14 31 chrX 146885226 146886094 -15713836 - L1MA7 LINE L1 -167 6124 5272 1321 142 26 8 chrX 146886089 146886356 -15713574 - L1MA7 LINE L1 -1510 4636 4365 * 182 333 0 30 chrX 146887010 146887076 -15712854 + L2 LINE L2 3203 3266 -6 510 258 78 66 chrX 146887242 146887486 -15712444 + MIR SINE MIR 15 261 -1 1528 42 0 11 chrX 146887685 146887875 -15712055 - L1PA8 LINE L1 -1 6171 5984 381 219 49 24 chrX 146888284 146888438 -15711492 + MIR SINE MIR 39 146 -62 799 275 101 22 chrX 146888754 146889121 -15710809 - MSTD LTR MaLR 0 396 1 202 314 51 39 chrX 146889122 146889278 -15710652 + MIR SINE MIR 92 249 -13 1627 187 139 13 chrX 146890069 146890449 -15709481 - MSTA LTR MaLR 0 428 1 325 78 0 62 chrX 146890449 146890513 -15709417 - MSTA-int LTR MaLR 0 1580 1521 748 127 63 39 chrX 146890515 146890775 -15709155 + THE1C LTR MaLR 3 318 -57 24 32 0 0 chrX 146890785 146890816 -15709114 + AT_rich Low_complexity Low_complexity 1 31 0 410 168 0 1 chrX 146890826 146890902 -15709028 + MSTA LTR MaLR 361 428 0 3220 123 225 39 chrX 146890902 146891594 -15708336 + MSTA-int LTR MaLR 1 821 -759 4566 155 14 55 chrX 146891594 146892531 -15707399 - MSTA-int LTR MaLR -680 900 3 740 160 146 0 chrX 146892533 146892677 -15707253 - MSTA LTR MaLR 0 428 264 1818 184 97 35 chrX 146892690 146893206 -15706724 - LTR10A LTR ERV1 -61 548 1 1087 178 116 12 chrX 146893206 146893448 -15706482 - MSTA LTR MaLR -161 267 1 269 253 35 23 chrX 146893556 146893643 -15706287 + MIR SINE MIR 56 143 -119 30 0 0 0 chrX 146894883 146894913 -15705017 + AT_rich Low_complexity Low_complexity 1 30 0 490 293 50 14 chrX 146895115 146895405 -15704525 - L1ME LINE L1 -497 5624 5326 24 53 0 0 chrX 146896399 146896437 -15703493 + AT_rich Low_complexity Low_complexity 1 38 0 1537 76 9 0 chrX 146897708 146897919 -15702011 + L1PA13 LINE L1 5949 6161 -2 192 40 0 0 chrX 146898118 146898143 -15701787 + (A)n Simple_repeat Simple_repeat 1 25 0 1612 274 22 20 chrX 146898249 146898804 -15701126 - L1MC4a LINE L1 -30 7778 7223 305 371 67 16 chrX 146898804 146899117 -15700813 - L2 LINE L2 -600 2714 2386 491 321 29 48 chrX 146899145 146899456 -15700474 - L2 LINE L2 -634 2680 2376 976 273 15 21 chrX 146899491 146899821 -15700109 + L1MC4a LINE L1 7454 7781 -27 418 366 31 16 chrX 146900075 146900269 -15699661 + L2 LINE L2 2760 2956 -358 410 341 64 38 chrX 146900288 146900552 -15699378 + L2 LINE L2 2606 2876 -438 2308 94 0 0 chrX 146900670 146900967 -15698963 - AluSx SINE Alu -15 297 1 617 239 0 12 chrX 146901036 146901199 -15698731 + L1MEc LINE L1 1887 2047 -4349 570 239 0 0 chrX 146901807 146901949 -15697981 + L1MEc LINE L1 2233 2374 -4022 835 228 133 11 chrX 146901953 146902300 -15697630 + L1MEc LINE L1 3619 4007 -2208 424 276 32 32 chrX 146903058 146903279 -15696651 - HAL1 LINE L1 -855 1652 1432 254 312 41 0 chrX 146903430 146903600 -15696330 - L1ME4a LINE L1 -190 5931 5755 5111 92 4 32 chrX 146903701 146904431 -15695499 - L1PB2 LINE L1 -2 6149 5443 2223 106 30 0 chrX 146904431 146904732 -15695198 - AluSx SINE Alu -2 310 1 5111 92 4 32 chrX 146904732 146904817 -15695113 - L1PB2 LINE L1 -708 5443 5357 2325 150 10 17 chrX 146904817 146905223 -15694707 - MER57A LTR ERV1 0 403 1 1601 119 19 11 chrX 146905223 146905484 -15694446 - MER57A-int LTR ERV1 0 7537 7275 599 125 50 8 chrX 146905487 146905607 -15694323 - LTR54B LTR ERV1 -371 127 3 9218 128 9 26 chrX 146905607 146906527 -15693403 - MER57A-int LTR ERV1 -391 7146 6263 4464 36 0 2 chrX 146906527 146907059 -15692871 - L1PA5 LINE L1 0 6154 5624 9218 128 9 26 chrX 146907059 146907718 -15692212 - MER57A-int LTR ERV1 -1274 6263 5594 449 184 20 0 chrX 146907718 146907816 -15692114 + (CATA)n Simple_repeat Simple_repeat 2 101 0 3106 122 10 4 chrX 146907824 146908324 -15691606 - MER57A-int LTR ERV1 -1938 5599 5097 266 291 8 8 chrX 146908960 146909194 -15690736 - HSAT4 Satellite centromeric -12 234 1 340 294 5 5 chrX 146909552 146909856 -15690074 - HSAT4 Satellite centromeric -5 304 1 375 275 0 0 chrX 146909935 146910275 -15689655 - HSAT4 Satellite centromeric -2 340 1 247 292 21 21 chrX 146910354 146910485 -15689445 - HSAT4 Satellite centromeric -5 131 1 277 312 0 0 chrX 146910564 146910657 -15689273 - HSAT4 Satellite centromeric -5 100 8 1902 181 23 0 chrX 146910671 146911013 -15688917 - MER57A LTR ERV1 -51 352 3 12012 221 41 11 chrX 146911014 146912260 -15687670 - L1 LINE L1 -786 5360 4153 2554 34 0 12 chrX 146912260 146912580 -15687350 + L1PA5 LINE L1 5839 6154 0 12012 221 41 11 chrX 146912580 146914447 -15685483 - L1 LINE L1 -1993 4153 2152 299 292 15 23 chrX 146914450 146914580 -15685350 - L1ME LINE L1 -456 5665 5537 507 309 0 0 chrX 146915304 146915443 -15684487 + MER117 DNA MER1_type 2 140 -57 276 30 0 0 chrX 146915455 146915488 -15684442 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chrX 146915951 146915973 -15683957 + AT_rich Low_complexity Low_complexity 1 22 0 584 208 9 0 chrX 146916579 146916685 -15683245 + MIR SINE MIR 41 147 -115 588 216 75 85 chrX 146916730 146916929 -15683001 - LTR48B LTR ERV1 0 644 448 350 254 56 16 chrX 146917035 146917203 -15682727 - LTR48 LTR ERV1 -411 131 1 319 191 128 21 chrX 146917400 146917494 -15682436 - LTR48 LTR ERV1 -75 712 609 300 266 18 37 chrX 146917530 146917639 -15682291 - LTR48 LTR ERV1 -302 485 379 970 187 123 0 chrX 146917660 146917863 -15682067 - MER34C LTR ERV1 -352 233 6 340 250 29 10 chrX 146917960 146918064 -15681866 - MIR SINE MIR -108 154 49 202 182 0 0 chrX 146918465 146918498 -15681432 + (CAG)n Simple_repeat Simple_repeat 2 34 0 236 28 0 56 chrX 146918665 146918701 -15681229 - L1PA4 LINE L1 -159 5995 5962 1400 24 6 0 chrX 146918701 146918943 -15680987 + L1PA4 LINE L1 5985 6227 0 225 159 0 0 chrX 146919930 146919974 -15679956 + (CA)n Simple_repeat Simple_repeat 2 45 0 518 279 7 15 chrX 146920705 146920841 -15679089 + L1M3f LINE L1 19 153 -5175 224 143 0 0 chrX 146921272 146921307 -15678623 + MER5A DNA MER1_type 1 35 -154 832 162 5 24 chrX 146921307 146921455 -15678475 - L1ME LINE L1 -690 5466 5359 2179 118 9 20 chrX 146921455 146921801 -15678129 + L1MA1 LINE L1 5950 6293 -9 832 162 5 24 chrX 146921801 146921815 -15678115 - L1ME LINE L1 -797 5359 5346 421 284 0 17 chrX 146921853 146921969 -15677961 + MER5A DNA MER1_type 76 189 0 271 150 0 100 chrX 146922072 146922152 -15677778 + MER53 DNA DNA 4 75 -114 442 224 82 93 chrX 146922276 146922459 -15677471 - MIR SINE MIR -4 258 78 314 280 0 9 chrX 146922480 146922587 -15677343 + L1M4 LINE L1 4507 4612 -1534 265 196 135 30 chrX 146922770 146922903 -15677027 + L1ME4a LINE L1 5962 6108 -13 447 81 0 0 chrX 146922955 146923017 -15676913 + Alu SINE Alu 1 62 -256 2500 153 36 0 chrX 146923265 146923678 -15676252 - MSTA LTR MaLR 0 428 1 273 257 211 9 chrX 146923715 146923824 -15676106 - MIR SINE MIR -126 136 6 259 333 105 60 chrX 146923824 146924270 -15675660 + L2 LINE L2 2348 2825 -489 1588 221 28 8 chrX 146924270 146924628 -15675302 - MLT1A1 LTR MaLR 0 365 1 259 333 105 60 chrX 146924628 146924734 -15675196 + L2 LINE L2 2825 2925 -389 2164 146 11 35 chrX 146924790 146925169 -15674761 - THE1B LTR MaLR 0 457 1 214 315 120 37 chrX 146926384 146926492 -15673438 + MIR SINE MIR 6 122 -140 2267 94 3 10 chrX 146926516 146926815 -15673115 + AluSp SINE Alu 1 297 -16 186 348 45 0 chrX 146928337 146928426 -15671504 + MIR SINE MIR 3 95 -167 555 251 87 11 chrX 146928993 146929176 -15670754 + L2 LINE L2 2865 3061 -252 466 93 0 13 chrX 146929191 146929266 -15670664 - L1PA8 LINE L1 0 6172 6099 227 359 9 108 chrX 146929427 146929650 -15670280 - L2 LINE L2 -95 3177 2977 405 0 0 0 chrX 146930274 146930319 -15669611 + (TA)n Simple_repeat Simple_repeat 1 45 0 6318 92 6 0 chrX 146930374 146931228 -15668702 - THE1B-int LTR MaLR -721 859 1 2054 125 60 26 chrX 146931228 146931580 -15668350 - THE1B LTR MaLR 0 364 1 4820 139 64 40 chrX 146931580 146932296 -15667634 + MER4A-int LTR ERV1 464 1162 -5436 1786 178 19 27 chrX 146932296 146932672 -15667258 - THE1C LTR MaLR 0 375 3 9063 142 47 16 chrX 146932674 146934207 -15665723 - THE1C-int LTR MaLR 0 1580 1 1731 155 36 75 chrX 146934209 146934597 -15665333 - THE1C LTR MaLR -2 373 1 4820 139 64 40 chrX 146934597 146935011 -15664919 + MER4A-int LTR ERV1 1162 1565 -5033 3094 164 72 55 chrX 146935011 146935690 -15664240 - LTR8 LTR ERV1 0 691 1 4820 139 64 40 chrX 146935690 146936587 -15663343 + MER4A-int LTR ERV1 1565 3677 -2921 2840 118 92 25 chrX 146936587 146937110 -15662820 + MER4A-int LTR ERV1 3818 4375 -2223 1701 124 4 15 chrX 146937088 146937355 -15662575 + MER4A-int LTR ERV1 6335 6598 0 * 909 97 0 52 chrX 146937356 146937510 -15662420 + MER4A LTR ERV1 1 146 -518 1738 148 5 32 chrX 146937537 146937901 -15662029 + MER4A LTR ERV1 252 664 0 883 247 82 8 chrX 146937901 146938160 -15661770 - MLT1D LTR MaLR -226 279 1 302 257 171 9 chrX 146938162 146938267 -15661663 - MIR SINE MIR -110 152 31 1294 39 0 0 chrX 146940448 146940634 -15659296 + L1PA4 LINE L1 5983 6168 0 2031 128 10 0 chrX 146941036 146941325 -15658605 - AluSx SINE Alu -18 294 3 22 56 0 0 chrX 146941672 146941708 -15658222 + AT_rich Low_complexity Low_complexity 1 36 0 874 285 178 5 chrX 146941880 146942263 -15657667 + L2 LINE L2 2092 2540 -774 204 329 0 25 chrX 146942308 146942387 -15657543 + L2 LINE L2 2549 2625 -689 510 288 16 21 chrX 146942460 146942651 -15657279 - L2 LINE L2 -2523 791 602 206 211 18 18 chrX 146943201 146943258 -15656672 + (TA)n Simple_repeat Simple_repeat 1 57 0 29 0 0 0 chrX 146944332 146944361 -15655569 + AT_rich Low_complexity Low_complexity 1 29 0 1713 185 49 59 chrX 146944361 146944787 -15655143 + MLT1C LTR MaLR 38 459 -8 1000 223 177 0 chrX 146944878 146945160 -15654770 - MER58B DNA MER1_type -5 336 5 184 353 71 0 chrX 146945201 146945286 -15654644 + MIR SINE MIR 60 150 -112 2618 159 22 4 chrX 146945293 146945831 -15654099 + L1MA4 LINE L1 5782 6328 0 1641 81 13 4 chrX 146945877 146946113 -15653817 - L1MA1 LINE L1 0 6302 6065 618 168 9 0 chrX 146946113 146946220 -15653710 + L1MA1 LINE L1 5926 6033 -269 785 245 34 0 chrX 146946220 146946384 -15653546 + MER45A DNA AcHobo 11 178 0 1256 217 26 32 chrX 146948172 146948482 -15651448 - MLT1D LTR MaLR -43 581 154 268 59 39 20 chrX 146948533 146948584 -15651346 + (TTTTG)n Simple_repeat Simple_repeat 3 54 0 1238 293 58 33 chrX 146948615 146949360 -15650570 - L2 LINE L2 -122 3191 2436 426 234 53 0 chrX 146949360 146949454 -15650476 + MIR SINE MIR 80 178 -84 362 327 84 40 chrX 146949469 146949695 -15650235 - MIR SINE MIR -6 256 21 198 0 0 0 chrX 146950904 146950926 -15649004 + (T)n Simple_repeat Simple_repeat 1 22 0 1835 32 0 0 chrX 146951942 146952162 -15647768 + L1PA4 LINE L1 5931 6150 -5 288 300 53 13 chrX 146952748 146952898 -15647032 + L1ME LINE L1 5508 5663 -458 862 208 112 0 chrX 146952927 146953124 -15646806 + MER20 DNA MER1_type 1 219 0 24 0 0 0 chrX 146953295 146953319 -15646611 + AT_rich Low_complexity Low_complexity 1 24 0 553 38 25 0 chrX 146953853 146953933 -15645997 + (TG)n Simple_repeat Simple_repeat 2 83 0 1570 237 73 23 chrX 146954021 146954502 -15645428 + MLT1D LTR MaLR 1 505 0 370 280 62 64 chrX 146954827 146954972 -15644958 + MIR SINE MIR 1 144 -64 5719 188 32 44 chrX 146955295 146956404 -15643526 - Charlie1a DNA MER1_type -1466 1295 202 2172 122 0 0 chrX 146956404 146956708 -15643222 - AluSx SINE Alu -8 304 1 5719 188 32 44 chrX 146956708 146956902 -15643028 - Charlie1a DNA MER1_type -2559 202 7 4092 143 8 3 chrX 146957462 146958128 -15641802 + L1PA15 LINE L1 5491 6159 -6 486 340 60 17 chrX 146958378 146958610 -15641320 + MIR SINE MIR 15 256 -6 820 160 32 16 chrX 146958751 146958939 -15640991 + L1MA7 LINE L1 6099 6289 -2 453 287 200 0 chrX 146959013 146959163 -15640767 + MER5A DNA MER1_type 9 188 -1 1556 207 58 9 chrX 146959350 146959698 -15640232 - MLT1A1 LTR MaLR 0 365 1 451 302 116 17 chrX 146960079 146960251 -15639679 - MER5A DNA MER1_type 0 189 1 226 326 22 11 chrX 146960420 146960512 -15639418 - MIR SINE MIR -169 93 1 383 268 29 65 chrX 146960526 146960664 -15639266 + MIR SINE MIR 54 186 -76 2810 56 0 0 chrX 146961423 146961778 -15638152 + L1PA5 LINE L1 5798 6152 -2 274 163 61 0 chrX 146962428 146962477 -15637453 - L2 LINE L2 0 3313 3262 735 300 0 6 chrX 146962776 146962936 -15636994 + MER45A DNA AcHobo 1 159 -19 419 287 33 8 chrX 146963614 146963736 -15636194 + L2 LINE L2 3189 3313 0 1610 170 36 49 chrX 146963768 146964156 -15635774 - L1MC2 LINE L1 0 6333 5918 230 227 0 0 chrX 146964184 146964228 -15635702 + Tigger5 DNA MER2_type 2277 2320 -3 * 302 194 0 151 chrX 146964228 146964272 -15635658 - Tigger5 DNA MER2_type -2245 78 53 3909 150 32 4 chrX 146964272 146964979 -15634951 - L1MA6 LINE L1 -5 6295 5569 302 194 0 151 chrX 146964979 146965026 -15634904 - Tigger5 DNA MER2_type -2270 53 1 1445 210 7 7 chrX 146965027 146965327 -15634603 - L1MC2 LINE L1 -422 5922 5623 322 268 24 67 chrX 146965360 146965524 -15634406 + MLT1K LTR MaLR 432 588 0 3721 117 7 0 chrX 146965598 146966156 -15633774 + L1PA14 LINE L1 5591 6152 -9 228 363 64 6 chrX 146966810 146966967 -15632963 - L2 LINE L2 -985 2329 2164 1585 237 103 11 chrX 146967129 146967593 -15632337 + MER97a DNA MER1_type? 22 528 -366 691 150 31 100 chrX 146969228 146969259 -15630671 - AluJo/FRAM SINE Alu -10 302 270 1856 148 0 41 chrX 146969259 146969577 -15630353 + AluSx SINE Alu 1 305 -7 691 150 31 100 chrX 146969577 146969705 -15630225 - AluJo/FRAM SINE Alu -42 270 154 286 136 0 55 chrX 146969817 146970060 -15629870 + (TA)n Simple_repeat Simple_repeat 1 229 0 326 338 31 19 chrX 146970704 146970864 -15629066 - LTR16A1 LTR ERVL -2 455 294 543 198 0 0 chrX 146970865 146970966 -15628964 - L1M3 LINE L1 -580 5591 5491 289 93 37 0 chrX 146970970 146971024 -15628906 + (TA)n Simple_repeat Simple_repeat 2 57 0 1203 161 0 5 chrX 146971042 146971259 -15628671 - L1M3 LINE L1 -837 5475 5260 3806 185 57 59 chrX 146971271 146972186 -15627744 - MER21A LTR ERV1 -4 927 15 17719 37 1 0 chrX 146972186 146974376 -15625554 - L1PA5 LINE L1 -2268 3878 1686 12029 48 8 1 chrX 146974376 146976627 -15623303 + L1PA5 LINE L1 3885 6142 -12 386 57 57 0 chrX 146976627 146976697 -15623233 + (TA)n Simple_repeat Simple_repeat 1 74 0 321 145 60 24 chrX 146976697 146976780 -15623150 - L1MCa LINE L1 -4361 2065 1980 340 26 103 0 chrX 146976784 146976862 -15623068 + (TA)n Simple_repeat Simple_repeat 1 86 0 4673 209 28 10 chrX 146977459 146978619 -15621311 - L1M3 LINE L1 -891 5255 4075 3287 186 25 40 chrX 146978615 146979182 -15620748 + L1MA10 LINE L1 5587 6142 -192 * 333 0 0 0 chrX 146979182 146979219 -15620711 + (CA)n Simple_repeat Simple_repeat 2 38 0 3287 186 25 40 chrX 146979219 146979403 -15620527 + L1MA10 LINE L1 6142 6327 -7 328 295 38 74 chrX 146979409 146979591 -15620339 - LTR16A1 LTR ERVL -154 303 123 21 36 0 0 chrX 146979746 146979774 -15620156 + AT_rich Low_complexity Low_complexity 1 28 0 1477 333 27 34 chrX 146979780 146980716 -15619214 - ERVL LTR ERVL -426 5338 4410 335 315 0 0 chrX 146980725 146980814 -15619116 + L1MC4 LINE L1 6614 6702 -1340 215 200 0 0 chrX 146980815 146980850 -15619080 + (TG)n Simple_repeat Simple_repeat 1 35 0 418 357 84 16 chrX 146981162 146981470 -15618460 - ERVL LTR ERVL -1832 3932 3604 521 332 46 15 chrX 146981694 146982079 -15617851 - ERVL LTR ERVL -2264 2732 2290 432 0 0 0 chrX 146982093 146982141 -15617789 + (TG)n Simple_repeat Simple_repeat 2 49 0 3897 249 52 54 chrX 146982148 146982273 -15617657 - L1ME1 LINE L1 -23 6143 6019 2245 130 0 0 chrX 146982273 146982581 -15617349 - AluSx SINE Alu -4 308 1 3897 249 52 54 chrX 146982581 146985064 -15614866 - L1ME1 LINE L1 -147 6019 3539 2312 150 23 9 chrX 146985111 146985660 -15614270 + THE1-int LTR MaLR 161 818 -762 615 193 4 0 chrX 146985661 146985788 -15614142 - L1M1 LINE L1 -802 5500 5369 473 270 17 17 chrX 146985787 146986017 -15613913 + L1MC/D LINE L1 5198 5430 -776 * 18505 183 29 12 chrX 146986404 146990567 -15609363 + L1MA3 LINE L1 168 4525 -3199 2054 160 123 5 chrX 146990567 146990948 -15608982 + MSTA LTR MaLR 3 428 0 18505 183 29 12 chrX 146990948 146994203 -15605727 + L1MA3 LINE L1 4525 7724 0 578 238 98 32 chrX 146994212 146994527 -15605403 + L1M4 LINE L1 2474 2809 -3337 785 284 16 3 chrX 146994544 146994847 -15605083 + L1M4 LINE L1 2847 3153 -2993 304 221 47 23 chrX 146995948 146996034 -15603896 + L1MC4 LINE L1 6615 6702 -1340 533 140 0 10 chrX 146996630 146996730 -15603200 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 182 167 62 0 chrX 146999509 146999557 -15600373 + GA-rich Low_complexity Low_complexity 6 56 0 860 226 89 4 chrX 147000383 147000618 -15599312 + L1MC3 LINE L1 7170 7424 -361 249 119 0 0 chrX 147000621 147000663 -15599267 + MER50 LTR ERV1 2 43 -691 2851 73 73 26 chrX 147000671 147001135 -15598795 + LTR21A LTR ERV1 1 486 -19 1045 121 24 6 chrX 147001135 147001301 -15598629 + MER50 LTR ERV1 51 219 -515 * 1630 115 4 8 chrX 147001288 147001531 -15598399 + MER50 LTR ERV1 470 711 -23 1187 226 58 9 chrX 147001532 147001859 -15598071 + L1MC3 LINE L1 7423 7765 -20 1894 193 24 42 chrX 147001861 147002312 -15597618 + LTR47B LTR ERVL 1 443 0 396 332 4 37 chrX 147002349 147002617 -15597313 + L1M4 LINE L1 3997 4255 -1891 284 154 19 0 chrX 147002628 147002680 -15597250 - MER67C LTR ERV1 -330 380 328 5102 145 17 36 chrX 147002684 147003754 -15596176 - L1PA15 LINE L1 -2 6163 5118 * 13209 148 13 15 chrX 147003735 147006738 -15593192 - L1PA11 LINE L1 -265 6560 3571 1920 275 55 60 chrX 147006743 147007714 -15592216 + L1P3 LINE L1 1 912 -4963 5962 97 30 13 chrX 147007718 147008809 -15591121 + L1PA10 LINE L1 5063 6168 0 4503 218 28 25 chrX 147008809 147009991 -15589939 - L1PA11 LINE L1 -4308 2489 1287 447 256 83 83 chrX 147010280 147010691 -15589239 + L1M4 LINE L1 4573 4983 -1163 30 0 0 0 chrX 147010763 147010793 -15589137 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chrX 147010893 147010919 -15589011 + (TG)n Simple_repeat Simple_repeat 2 27 0 321 26 0 0 chrX 147010921 147010959 -15588971 + (GA)n Simple_repeat Simple_repeat 1 38 0 257 236 0 18 chrX 147011396 147011451 -15588479 + Tigger1 DNA MER2_type 2 55 -2363 992 74 0 0 chrX 147011453 147011574 -15588356 - AluSg/x SINE Alu -15 297 177 317 370 41 16 chrX 147012971 147013214 -15586716 + L2 LINE L2 2457 2705 -609 2208 99 19 10 chrX 147013225 147013538 -15586392 + L1PA13 LINE L1 5844 6159 -4 277 309 67 36 chrX 147013540 147013763 -15586167 - L1MC3 LINE L1 -1631 6154 5925 882 277 16 4 chrX 147013783 147014076 -15585854 - L1MC3 LINE L1 -739 5565 5282 7763 35 12 0 chrX 147014102 147015075 -15584855 + L1PA4 LINE L1 5171 6154 -1 1469 223 35 50 chrX 147015259 147015322 -15584608 - L1MC2 LINE L1 -52 6292 6230 393 22 0 0 chrX 147015322 147015368 -15584562 + (CA)n Simple_repeat Simple_repeat 1 46 0 1469 223 35 50 chrX 147015368 147015765 -15584165 - L1MC2 LINE L1 -114 6230 5839 1110 234 12 46 chrX 147015761 147016253 -15583677 - L1MC2 LINE L1 -743 5403 5066 * 21 0 0 0 chrX 147016578 147016599 -15583331 + AT_rich Low_complexity Low_complexity 1 21 0 229 313 38 0 chrX 147016603 147016734 -15583196 + L1MC/D LINE L1 5721 5856 -1952 2401 86 0 16 chrX 147016771 147017084 -15582846 - AluSq SINE Alu -5 308 1 1404 203 50 84 chrX 147017105 147017509 -15582421 - MLT1B LTR MaLR 0 390 1 212 173 27 27 chrX 147017562 147017637 -15582293 + (TA)n Simple_repeat Simple_repeat 1 75 0 324 239 88 57 chrX 147017862 147017977 -15581953 - MLT1J1 LTR MaLR 0 446 323 2025 185 23 21 chrX 147017977 147018366 -15581564 + MLT1B LTR MaLR 1 390 0 324 239 88 57 chrX 147018366 147018409 -15581521 - MLT1J1 LTR MaLR -123 323 283 21 36 0 0 chrX 147019084 147019112 -15580818 + AT_rich Low_complexity Low_complexity 1 28 0 661 296 49 13 chrX 147020055 147020292 -15579638 + MIR SINE MIR 16 261 -1 383 282 24 47 chrX 147021102 147021357 -15578573 - L1M4 LINE L1 -2646 3500 3252 4235 24 0 6 chrX 147021445 147021911 -15578019 - L1PA3 LINE L1 0 6155 5693 6057 17 0 10 chrX 147021912 147022935 -15576995 + L1PA3 LINE L1 4698 5708 -447 186 103 0 0 chrX 147024584 147024613 -15575317 + (GGA)n Simple_repeat Simple_repeat 2 30 0 184 402 17 0 chrX 147026839 147026956 -15572974 + L2 LINE L2 2587 2705 -609 472 272 44 36 chrX 147026981 147027211 -15572719 - L1MC3 LINE L1 -22 6144 5907 * 925 249 43 7 chrX 147027195 147027476 -15572454 - L1MC3 LINE L1 -2388 5607 5317 1307 257 25 27 chrX 147027590 147027994 -15571936 - L1MC2 LINE L1 -98 6246 5844 957 248 15 4 chrX 147027996 147028266 -15571664 - L1MC2 LINE L1 -2496 5546 5274 904 208 55 124 chrX 147028269 147028505 -15571425 - MLT1B LTR MaLR -67 323 117 10746 163 7 9 chrX 147028505 147031115 -15568815 - L1PA12 LINE L1 -1 6818 4213 904 208 55 124 chrX 147031115 147031225 -15568705 - MLT1B LTR MaLR -273 117 1 1441 209 7 17 chrX 147031665 147031966 -15567964 + MLT1B LTR MaLR 1 298 -92 257 197 16 0 chrX 147031966 147032027 -15567903 + L1MD3 LINE L1 7934 7995 0 235 111 0 111 chrX 147032640 147032694 -15567236 - MLT1A1 LTR MaLR -303 62 15 2056 107 0 34 chrX 147032774 147033112 -15566818 - AluSx SINE Alu 0 328 1 632 189 8 0 chrX 147033181 147033308 -15566622 - L1MC3 LINE L1 -1891 5894 5767 4485 154 11 4 chrX 147033308 147034058 -15565872 + L1MA3 LINE L1 5531 6288 -17 3859 253 15 12 chrX 147034138 147035260 -15564670 - L1PA12 LINE L1 -4374 2423 1286 256 281 102 58 chrX 147035360 147036046 -15563884 + L1M4 LINE L1 4340 5055 -1091 304 349 20 0 chrX 147037380 147037529 -15562401 + L2 LINE L2 2463 2614 -700 2144 111 23 0 chrX 147037577 147037883 -15562047 + L1PA13 LINE L1 5844 6156 -7 305 297 98 8 chrX 147037883 147038110 -15561820 - L1MC4 LINE L1 -1626 6159 5924 872 235 58 8 chrX 147038137 147038380 -15561550 - L1MC4 LINE L1 -2473 5569 5315 * 1669 232 27 47 chrX 147038373 147038486 -15561444 - L1MC2 LINE L1 0 6344 6230 303 104 0 0 chrX 147038486 147038534 -15561396 + (CA)n Simple_repeat Simple_repeat 1 48 0 1669 232 27 47 chrX 147038534 147038932 -15560998 - L1MC2 LINE L1 -114 6230 5843 941 239 41 25 chrX 147038933 147039081 -15560849 - L1MC2 LINE L1 -782 5364 5220 1724 169 78 36 chrX 147039081 147039441 -15560489 - THE1C LTR MaLR 0 375 1 941 239 41 25 chrX 147039441 147039786 -15560144 - L1MC2 LINE L1 -926 5220 5046 228 180 49 49 chrX 147040211 147040272 -15559658 + L1MC/D LINE L1 5817 5877 -1931 1003 225 79 85 chrX 147040283 147040661 -15559269 - MLT1B LTR MaLR -10 380 5 250 261 0 0 chrX 147040685 147040750 -15559180 + (TA)n Simple_repeat Simple_repeat 1 65 0 1746 216 29 13 chrX 147041098 147041482 -15558448 + MLT1B LTR MaLR 1 390 0 283 302 46 90 chrX 147043050 147043303 -15556627 + MIR SINE MIR 11 261 -1 2518 55 0 3 chrX 147044304 147044616 -15555314 + AluY SINE Alu 1 311 0 225 243 0 0 chrX 147046079 147046149 -15553781 + GA-rich Low_complexity Low_complexity 2 71 0 357 282 68 39 chrX 147047154 147047440 -15552490 - L1MC3 LINE L1 -1599 6186 5903 802 246 72 4 chrX 147047451 147047687 -15552243 - L1MC3 LINE L1 -2429 5566 5315 231 167 0 0 chrX 147047807 147047849 -15552081 + (CA)n Simple_repeat Simple_repeat 1 42 0 1445 211 53 40 chrX 147047849 147048248 -15551682 - L1MC2 LINE L1 -98 6246 5843 1283 206 16 34 chrX 147048249 147048734 -15551196 - L1MC2 LINE L1 -743 5403 5066 1417 192 3 86 chrX 147049155 147049514 -15550416 - MLT1B LTR MaLR 0 390 62 204 296 0 0 chrX 147049554 147049625 -15550305 + (TA)n Simple_repeat Simple_repeat 1 71 0 2056 158 33 41 chrX 147049971 147050364 -15549566 + MLT1B LTR MaLR 1 390 0 519 260 79 49 chrX 147051897 147052140 -15547790 + MIR SINE MIR 11 261 -1 398 265 48 45 chrX 147057040 147057276 -15542654 - L1MC3 LINE L1 -22 6144 5902 * 896 246 42 18 chrX 147057255 147057540 -15542390 - L1MC3 LINE L1 -2388 5607 5316 1183 261 53 28 chrX 147057654 147058048 -15541882 - L1MC2 LINE L1 -98 6246 5843 502 211 10 0 chrX 147058049 147058153 -15541777 - L1MC2 LINE L1 -2496 5546 5442 256 368 6 12 chrX 147058198 147058369 -15541561 + C-rich Low_complexity Low_complexity 4 173 0 475 270 14 14 chrX 147059615 147059763 -15540167 + L1MC3 LINE L1 7166 7313 -472 385 235 0 0 chrX 147059760 147059845 -15540085 + L1MC3 LINE L1 7698 7782 -3 * 250 287 21 11 chrX 147059889 147059983 -15539947 + L1 LINE L1 4021 4115 -2031 2579 163 29 30 chrX 147060377 147061112 -15538818 - L1MA3 LINE L1 0 7724 6922 4209 150 33 67 chrX 147061112 147061924 -15538006 + LTR1 LTR ERV1 1 785 0 2579 163 29 30 chrX 147061924 147062527 -15537403 - L1MA3 LINE L1 -802 6922 6320 988 132 16 0 chrX 147062571 147062760 -15537170 - L1MA2 LINE L1 0 6304 6113 2299 176 10 8 chrX 147062775 147063258 -15536672 + L1 LINE L1 4412 4895 -1251 16376 172 47 20 chrX 147063263 147066567 -15533363 - L1MA3 LINE L1 -4160 3405 13 2452 164 24 5 chrX 147066618 147067038 -15532892 + MSTA LTR MaLR 1 428 0 413 294 38 58 chrX 147067039 147067332 -15532598 + L1M4 LINE L1 4541 4827 -1319 1009 246 16 0 chrX 147067448 147067704 -15532226 + L1PB4 LINE L1 5894 6153 -3 598 325 29 12 chrX 147068385 147068625 -15531305 + L2 LINE L2 2462 2705 -609 487 224 74 55 chrX 147068639 147068895 -15531035 - L1ME1 LINE L1 -56 6390 6182 251 197 16 16 chrX 147068894 147068955 -15530975 - L1ME1 LINE L1 -2463 5859 5799 * 2755 147 25 4 chrX 147068955 147069464 -15530466 + L1MA4A LINE L1 5663 6182 -121 646 263 26 4 chrX 147069460 147069688 -15530242 - L1ME1 LINE L1 -1413 5013 4781 * 2176 201 48 44 chrX 147069758 147070462 -15529468 - L1M2 LINE L1 -743 5403 4824 704 249 17 13 chrX 147070470 147070658 -15529272 - L1ME1 LINE L1 -4739 1687 1496 473 0 18 0 chrX 147070658 147070715 -15529215 + (TC)n Simple_repeat Simple_repeat 1 58 0 704 249 17 13 chrX 147070715 147070763 -15529167 - L1ME1 LINE L1 -4930 1496 1450 756 297 0 10 chrX 147071116 147071311 -15528619 + MIR SINE MIR 1 193 -69 203 206 43 7 chrX 147071361 147071502 -15528428 + (TA)n Simple_repeat Simple_repeat 2 147 0 2479 38 0 3 chrX 147072074 147072367 -15527563 + AluY SINE Alu 1 292 -19 1570 218 37 15 chrX 147072879 147073334 -15526596 + Charlie4a DNA MER1_type 1 465 -43 279 312 79 47 chrX 147073360 147073575 -15526355 + MIR SINE MIR 23 244 -18 1074 122 142 19 chrX 147073608 147073813 -15526117 + MER30 DNA MER1_type 1 230 0 339 181 0 0 chrX 147074201 147074273 -15525657 + (TA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chrX 147074315 147074338 -15525592 + AT_rich Low_complexity Low_complexity 1 23 0 402 162 0 0 chrX 147074710 147074784 -15525146 + (TA)n Simple_repeat Simple_repeat 1 74 0 366 278 23 34 chrX 147074949 147075125 -15524805 - L1M4c LINE L1 -4186 2460 2287 3929 261 63 22 chrX 147075211 147077044 -15522886 - L1M4c LINE L1 -4543 2103 195 1680 129 54 72 chrX 147077057 147077430 -15522500 - LTR10A LTR ERV1 -61 548 183 531 245 7 0 chrX 147077538 147077689 -15522241 - L1M4c LINE L1 -6345 197 46 2970 154 0 2 chrX 147077691 147078196 -15521734 - MER41B LTR ERV1 0 635 132 254 61 0 0 chrX 147078200 147078233 -15521697 + LTR7 LTR ERV1 1 33 -417 13592 110 11 35 chrX 147078396 147080731 -15519199 + HERVH LTR ERV1 460 2987 -4726 5259 130 0 2 chrX 147080725 147081581 -15518349 + HERVH LTR ERV1 3140 3993 -3720 * 7544 124 1 1 chrX 147081634 147082801 -15517129 + HERVH LTR ERV1 3994 5149 -2564 1305 146 0 0 chrX 147082802 147083022 -15516908 + HERVH LTR ERV1 5600 5819 -1894 2330 71 50 19 chrX 147083022 147083400 -15516530 + HERVH LTR ERV1 7324 7713 0 1306 155 130 88 chrX 147083400 147083832 -15516098 + LTR7 LTR ERV1 1 450 0 753 153 8 0 chrX 147083832 147083963 -15515967 - MER41B LTR ERV1 -503 132 1 213 277 15 0 chrX 147085055 147085120 -15514810 + GA-rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chrX 147085874 147085897 -15514033 + AT_rich Low_complexity Low_complexity 1 23 0 321 350 8 25 chrX 147086540 147086660 -15513270 + L1ME3A LINE L1 6002 6119 -51 271 167 0 0 chrX 147086665 147086713 -15513217 - MSTC LTR MaLR 0 428 381 2615 103 17 6 chrX 147086713 147087073 -15512857 + THE1B LTR MaLR 1 364 0 7830 121 123 10 chrX 147087073 147088493 -15511437 + THE1B-int LTR MaLR 1 1580 0 2353 123 25 8 chrX 147088493 147088851 -15511079 + THE1B LTR MaLR 1 364 0 2193 175 0 23 chrX 147088851 147089245 -15510685 - MSTC LTR MaLR -43 385 1 43 0 0 0 chrX 147089319 147089362 -15510568 + AT_rich Low_complexity Low_complexity 1 43 0 208 309 0 0 chrX 147090235 147090290 -15509640 + L2 LINE L2 3217 3271 -1 268 350 82 32 chrX 147090853 147091053 -15508877 + L2 LINE L2 1935 2149 -1165 2043 95 7 11 chrX 147091053 147091360 -15508570 - AluSq SINE Alu 0 306 1 268 350 82 32 chrX 147091360 147091378 -15508552 + L2 LINE L2 2149 2165 -1149 210 337 172 45 chrX 147091589 147091856 -15508074 - L2 LINE L2 -2705 609 309 24 0 0 0 chrX 147092209 147092233 -15507697 + AT_rich Low_complexity Low_complexity 1 24 0 352 286 143 8 chrX 147092847 147092966 -15506964 - MIR SINE MIR -18 244 110 310 328 27 62 chrX 147093315 147093571 -15506359 - L1ME4a LINE L1 -227 5894 5648 306 181 28 28 chrX 147094003 147094075 -15505855 + L1MA9 LINE L1 1 72 -6958 1788 102 0 0 chrX 147094075 147094301 -15505629 + AluSc SINE Alu 1 226 -83 22 70 0 0 chrX 147094339 147094382 -15505548 + AT_rich Low_complexity Low_complexity 1 43 0 2203 257 69 88 chrX 147094476 147096178 -15503752 + L1MA9 LINE L1 144 1813 -5217 5083 215 32 40 chrX 147096190 147098958 -15500972 + L1MA9 LINE L1 4526 7157 -115 1803 217 55 10 chrX 147099063 147099557 -15500373 + L1ME1 LINE L1 5647 6162 -4 2125 181 14 11 chrX 147099588 147100024 -15499906 - L1PA16 LINE L1 -6 6160 5724 288 182 0 0 chrX 147100029 147100095 -15499835 - L1PA16 LINE L1 -474 5692 5627 * 6645 208 9 6 chrX 147100092 147102409 -15497521 - L1PA15-16 LINE L1 -5092 1757 1 233 259 0 0 chrX 147102442 147102500 -15497430 - MLT1K LTR MaLR -180 408 351 320 263 40 30 chrX 147102570 147102669 -15497261 - MLT1K LTR MaLR -357 231 132 1777 240 25 5 chrX 147102775 147103221 -15496709 - Charlie1a DNA MER1_type -1000 455 1 2568 95 22 8 chrX 147103495 147103854 -15496076 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrX 147103967 147103988 -15495942 + AT_rich Low_complexity Low_complexity 1 21 0 451 263 48 88 chrX 147104185 147104413 -15495517 + MER102b DNA MER1_type 110 328 -13 2296 118 0 3 chrX 147104600 147104904 -15495026 - AluSx SINE Alu -9 303 1 891 132 0 0 chrX 147104947 147105083 -15494847 - L1MA2 LINE L1 0 6304 6169 196 314 55 122 chrX 147105739 147106051 -15493879 - L2 LINE L2 -87 3185 2895 266 313 0 12 chrX 147106222 147106302 -15493628 - L2 LINE L2 -575 2739 2661 488 291 81 36 chrX 147107077 147107300 -15492630 + MIR SINE MIR 3 235 -27 2544 270 45 52 chrX 147107358 147108117 -15491813 + L1MEc LINE L1 37 786 -5610 1461 209 43 0 chrX 147108117 147108394 -15491536 + AluJb SINE Alu 9 297 -15 2544 270 45 52 chrX 147108394 147108850 -15491080 + L1MEc LINE L1 786 1244 -5152 521 225 48 84 chrX 147109604 147109831 -15490099 + L1ME1 LINE L1 5812 6030 -136 663 199 0 0 chrX 147109836 147109972 -15489958 + L1MA10 LINE L1 6196 6331 -3 891 221 9 37 chrX 147110566 147110783 -15489147 + MLT1E2 LTR MaLR 4 214 -412 266 106 21 0 chrX 147110961 147111008 -15488922 + (TC)n Simple_repeat Simple_repeat 1 48 0 272 73 0 0 chrX 147111019 147111060 -15488870 - L1MB1 LINE L1 -37 6152 6112 197 83 28 0 chrX 147111376 147111412 -15488518 + (TG)n Simple_repeat Simple_repeat 2 38 0 1514 183 26 0 chrX 147111412 147111718 -15488212 - L1MB1 LINE L1 -33 6156 5843 1160 106 28 6 chrX 147111746 147111926 -15488004 - LTR2B LTR ERV1 -116 374 191 369 117 0 0 chrX 147111926 147111986 -15487944 + L1MB1 LINE L1 5780 5839 -350 270 323 115 0 chrX 147112374 147112504 -15487426 + MIR SINE MIR 6 150 -112 253 304 119 26 chrX 147112583 147112777 -15487153 - MIR SINE MIR -27 235 24 21 0 0 0 chrX 147113529 147113550 -15486380 + AT_rich Low_complexity Low_complexity 1 21 0 301 307 23 0 chrX 147114137 147114225 -15485705 + L1MC4 LINE L1 6614 6703 -1339 21 36 0 0 chrX 147114843 147114871 -15485059 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chrX 147115243 147115266 -15484664 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2414 153 2 0 chrX 147115502 147115906 -15484024 - Tigger1 DNA MER2_type 0 2418 2014 2803 130 33 35 chrX 147115913 147116404 -15483526 + LTR2B LTR ERV1 1 490 0 40063 197 9 14 chrX 147116404 147124251 -15475679 + HERVE LTR ERV1 1 7812 -1 2736 133 32 60 chrX 147124251 147124755 -15475175 + LTR2B LTR ERV1 1 490 0 11324 146 14 19 chrX 147124755 147126759 -15473171 - Tigger1 DNA MER2_type -424 1994 1 2594 46 0 3 chrX 147127131 147127436 -15472494 - AluY SINE Alu -7 304 1 705 248 45 35 chrX 147127647 147127849 -15472081 - MIR SINE MIR -52 210 7 351 325 53 0 chrX 147128164 147128278 -15471652 + L2 LINE L2 3137 3256 -16 418 243 55 0 chrX 147130041 147130167 -15469763 - MIR SINE MIR -63 145 13 333 62 0 0 chrX 147130290 147130338 -15469592 + (TG)n Simple_repeat Simple_repeat 2 49 0 444 257 29 22 chrX 147132725 147132861 -15467069 - MER5B DNA MER1_type -41 137 1 2252 82 0 0 chrX 147133275 147133557 -15466373 + AluSg SINE Alu 1 282 -28 196 30 61 0 chrX 147133563 147133596 -15466334 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1302 269 20 3 chrX 147135917 147136274 -15463656 - MLT1A2 LTR MaLR -11 363 1 252 0 0 0 chrX 147136276 147136304 -15463626 + (T)n Simple_repeat Simple_repeat 1 28 0 7789 19 0 0 chrX 147136343 147137361 -15462569 - L1PA3 LINE L1 -3 6152 5135 2539 203 12 14 chrX 147137361 147137881 -15462049 + MLT2B3 LTR ERVL 4 413 -40 228 278 0 0 chrX 147137881 147137971 -15461959 - L1MC4 LINE L1 -1339 6703 6614 * 279 244 0 0 chrX 147137947 147138037 -15461893 + L1MC4 LINE L1 6614 6703 -1339 354 297 19 0 chrX 147138146 147138301 -15461629 + L1MB7 LINE L1 3415 3572 -2574 * 760 94 0 5 chrX 147138299 147138419 -15461511 - L1MA2 LINE L1 -223 5938 5830 1481 244 36 14 chrX 147138478 147138982 -15460948 + L1MB7 LINE L1 3622 4136 -2010 3238 188 37 62 chrX 147138984 147140134 -15459796 + L1MB7 LINE L1 5058 6176 -8 1986 134 33 13 chrX 147140196 147140501 -15459429 - AluSx SINE Alu -1 311 1 264 30 0 0 chrX 147140732 147140765 -15459165 + (TC)n Simple_repeat Simple_repeat 2 34 0 210 118 0 0 chrX 147140764 147140798 -15459132 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 219 150 0 0 chrX 147142543 147142583 -15457347 + (TC)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chrX 147144220 147144256 -15455674 + GC_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chrX 147145035 147145063 -15454867 + AT_rich Low_complexity Low_complexity 1 28 0 1192 122 0 0 chrX 147145065 147145253 -15454677 - L1MA2 LINE L1 0 6304 6117 216 122 0 0 chrX 147145952 147145993 -15453937 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 100 0 0 chrX 147146031 147146061 -15453869 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1272 299 70 40 chrX 147146076 147146779 -15453151 - L2 LINE L2 -40 3273 2534 1237 265 0 21 chrX 147147219 147147544 -15452386 + L3b LINE CR1 1103 1420 -163 1519 77 5 5 chrX 147148134 147148356 -15451574 - pTR5 LTR ERV1 -2046 392 171 310 233 29 19 chrX 147148358 147148461 -15451469 - LTR30 LTR ERV1 -80 642 539 4870 118 76 68 chrX 147148461 147149589 -15450341 - pTR5 LTR ERV1 -418 2020 738 477 309 160 6 chrX 147149837 147150018 -15449912 + MIR SINE MIR 48 256 -6 685 309 49 71 chrX 147150019 147150385 -15449545 - L3 LINE CR1 -287 1290 933 260 369 102 5 chrX 147150632 147150838 -15449092 + L2 LINE L2 1761 1986 -1328 705 291 110 64 chrX 147150905 147151342 -15448588 - LTR33A LTR ERVL -65 458 2 442 330 155 25 chrX 147151696 147152063 -15447867 + L2 LINE L2 2402 2816 -498 215 440 14 0 chrX 147152163 147152304 -15447626 + L2 LINE L2 2918 3060 -212 1984 168 136 5 chrX 147152476 147152880 -15447050 - MSTB2 LTR MaLR 0 457 1 5172 223 45 82 chrX 147152880 147154595 -15445335 - MSTB2-int LTR MaLR 0 1651 1 2279 118 92 24 chrX 147154595 147155010 -15444920 - MSTB2 LTR MaLR 0 457 15 2286 107 30 33 chrX 147155524 147155889 -15444041 - THE1B LTR MaLR 0 364 1 323 311 36 61 chrX 147155925 147156121 -15443809 + MIR SINE MIR 32 222 -40 2138 93 0 10 chrX 147156168 147156493 -15443437 - AluSx SINE Alu 0 322 1 224 165 0 76 chrX 147157422 147157501 -15442429 + (TATAA)n Simple_repeat Simple_repeat 1 73 0 364 264 113 50 chrX 147158130 147158289 -15441641 + L1MC4 LINE L1 6535 6703 -1339 219 114 0 0 chrX 147158291 147158326 -15441604 + (GA)n Simple_repeat Simple_repeat 2 36 0 2041 114 26 0 chrX 147158326 147158598 -15441332 - AluSc SINE Alu -30 279 1 1263 282 50 25 chrX 147158615 147158977 -15440953 + L1ME2 LINE L1 2023 2374 -3841 7461 181 38 5 chrX 147158977 147161227 -15438703 + L1PA13 LINE L1 3884 6163 0 1263 282 50 25 chrX 147161227 147161685 -15438245 + L1ME2 LINE L1 2374 2822 -3393 233 237 193 0 chrX 147161705 147161840 -15438090 + L1ME2 LINE L1 3243 3403 -2812 943 287 137 18 chrX 147164214 147164899 -15435031 + L1ME2 LINE L1 4039 4818 -1397 780 212 61 28 chrX 147164899 147165111 -15434819 - MER20 DNA MER1_type 0 219 1 943 287 137 18 chrX 147165111 147165156 -15434774 + L1ME2 LINE L1 4818 4856 -1359 2517 50 0 3 chrX 147165170 147165473 -15434457 + AluY SINE Alu 1 302 -9 580 215 32 19 chrX 147165500 147165658 -15434272 + MER105 DNA DNA 8 167 -37 638 270 29 39 chrX 147165691 147165867 -15434063 + L1ME2 LINE L1 4879 5052 -1163 225 65 0 0 chrX 147165867 147165898 -15434032 + (CA)n Simple_repeat Simple_repeat 2 32 0 638 270 29 39 chrX 147165898 147166032 -15433898 + L1ME2 LINE L1 5052 5186 -1029 610 280 22 6 chrX 147166036 147166218 -15433712 + MLT1E LTR MaLR 1 185 -408 1172 244 32 35 chrX 147166266 147166577 -15433353 + MLT1E LTR MaLR 276 585 -8 1303 238 50 55 chrX 147166614 147167205 -15432725 + L1ME2 LINE L1 5193 5785 -448 239 88 0 0 chrX 147167205 147167239 -15432691 - HSMAR1 DNA Mariner -1253 34 1 1303 238 50 55 chrX 147167239 147167677 -15432253 + L1ME2 LINE L1 5785 6224 -9 253 81 0 0 chrX 147167675 147167712 -15432218 + L1P4 LINE L1 5767 5803 -362 * 311 335 42 30 chrX 147167941 147168108 -15431822 + MIR SINE MIR 21 189 -73 203 116 0 47 chrX 147168683 147168726 -15431204 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 2521 51 0 3 chrX 147168902 147169214 -15430716 + AluY SINE Alu 1 311 0 1328 76 16 11 chrX 147169698 147169883 -15430047 + AluSg/x SINE Alu 119 304 -5 295 306 24 40 chrX 147172280 147172404 -15427526 - MIR SINE MIR -107 155 34 182 191 21 0 chrX 147173091 147173138 -15426792 + CT-rich Low_complexity Low_complexity 1 48 0 1053 170 10 0 chrX 147173676 147173882 -15426048 - L1PA14 LINE L1 0 6161 5954 599 101 20 10 chrX 147173890 147173989 -15425941 - LTR5 LTR ERVK 0 969 870 12457 205 16 24 chrX 147173989 147178955 -15420975 - L1PA13 LINE L1 -1722 5075 149 2067 146 21 29 chrX 147178955 147179333 -15420597 + THE1C LTR MaLR 1 375 0 12457 205 16 24 chrX 147179333 147179481 -15420449 - L1PA13 LINE L1 -6648 149 1 588 360 26 11 chrX 147179492 147179759 -15420171 - L3 LINE CR1 -858 719 449 217 154 26 0 chrX 147181087 147181126 -15418804 + CT-rich Low_complexity Low_complexity 1 40 0 226 271 0 0 chrX 147181184 147181243 -15418687 + MER5B DNA MER1_type 116 174 -4 227 277 0 0 chrX 147181849 147181896 -15418034 - MIR SINE MIR -63 145 99 487 224 0 0 chrX 147182077 147182175 -15417755 - MER5A DNA MER1_type -83 106 9 509 310 27 21 chrX 147182817 147183004 -15416926 - MER5A DNA MER1_type -1 188 1 13909 206 27 37 chrX 147183272 147188103 -15411827 + L1PA16 LINE L1 5 4785 -2064 1407 209 3 24 chrX 147188113 147188400 -15411530 + AluJb SINE Alu 13 293 -19 2137 201 4 4 chrX 147188411 147188888 -15411042 + L1 LINE L1 4780 5256 -1593 41007 31 21 1 chrX 147188897 147194924 -15405006 + L1PA2 LINE L1 1 6150 -5 4807 146 55 5 chrX 147194931 147196497 -15403433 + L1PA16 LINE L1 5263 6868 -1 276 319 52 43 chrX 147196679 147196889 -15403041 - MLT1J LTR MaLR -299 212 1 1678 172 20 15 chrX 147197419 147197762 -15402168 - L1MC2 LINE L1 -13 6331 5987 189 0 0 0 chrX 147197953 147197974 -15401956 + (TTG)n Simple_repeat Simple_repeat 2 22 0 216 314 118 0 chrX 147197974 147198076 -15401854 - MIR SINE MIR -31 231 118 728 290 50 13 chrX 147198130 147198368 -15401562 + MER45B DNA AcHobo 1 247 -793 4097 192 32 54 chrX 147198395 147198973 -15400957 + MER45B DNA AcHobo 46 592 -989 2401 98 0 0 chrX 147198973 147199280 -15400650 + AluSg SINE Alu 1 307 -3 4097 192 32 54 chrX 147199280 147199719 -15400211 + MER45B DNA AcHobo 592 1039 -1 293 310 44 0 chrX 147200098 147200211 -15399719 - MIR SINE MIR -11 251 134 248 276 0 0 chrX 147200211 147200287 -15399643 + MER116 DNA Mariner 1 76 -4 417 357 0 0 chrX 147200292 147200418 -15399512 - MIR SINE MIR -128 134 9 23 33 0 0 chrX 147201129 147201159 -15398771 + AT_rich Low_complexity Low_complexity 1 30 0 336 389 64 22 chrX 147201306 147201903 -15398027 + L2 LINE L2 477 1098 -2216 187 259 32 139 chrX 147201931 147202182 -15397748 + L2 LINE L2 1230 1453 -1861 6168 70 6 48 chrX 147202206 147203068 -15396862 + LTR12 LTR ERV1 1 826 0 726 358 117 25 chrX 147203079 147203418 -15396512 + L2 LINE L2 1629 1935 -1379 270 0 0 0 chrX 147203418 147203448 -15396482 + (CAA)n Simple_repeat Simple_repeat 3 32 0 726 358 117 25 chrX 147203448 147204006 -15395924 + L2 LINE L2 1935 2609 -705 345 82 0 0 chrX 147204476 147204525 -15395405 + (TG)n Simple_repeat Simple_repeat 2 50 0 216 316 0 0 chrX 147204957 147205014 -15394916 - L2 LINE L2 -240 3032 2976 2404 77 3 0 chrX 147205134 147205431 -15394499 + AluSg SINE Alu 1 298 -12 245 289 22 33 chrX 147205893 147205983 -15393947 - MIR3 SINE MIR -14 194 106 2192 179 10 0 chrX 147206333 147206718 -15393212 + MLT1B LTR MaLR 2 390 0 648 301 23 14 chrX 147207014 147207230 -15392700 - MIR SINE MIR -37 225 8 188 290 58 0 chrX 147207717 147207786 -15392144 - L2 LINE L2 -49 3264 3192 255 291 103 0 chrX 147208538 147208655 -15391275 - MIR SINE MIR -34 228 100 1970 159 101 25 chrX 147208661 147209057 -15390873 + MSTB LTR MaLR 1 426 0 954 91 0 0 chrX 147209070 147209191 -15390739 - AluY SINE Alu -190 121 1 2091 319 29 25 chrX 147209191 147210266 -15389664 + L2 LINE L2 2234 3309 -4 372 301 15 45 chrX 147210556 147210689 -15389241 + MIR3 SINE MIR 53 181 -27 212 370 76 42 chrX 147210732 147210970 -15388960 + MIR SINE MIR 11 256 -6 290 280 30 20 chrX 147211503 147211603 -15388327 - MIR SINE MIR -112 150 50 1911 76 0 0 chrX 147212000 147212250 -15387680 - L1PA7 LINE L1 -3 6151 5902 244 379 32 16 chrX 147212326 147212450 -15387480 + MIR SINE MIR 18 143 -65 1790 187 17 35 chrX 147212457 147212502 -15387428 - MLT2C1 LTR ERVL -2 395 351 360 64 0 0 chrX 147212502 147212549 -15387381 + (CA)n Simple_repeat Simple_repeat 1 47 0 1790 187 17 35 chrX 147212549 147212905 -15387025 - MLT2C1 LTR ERVL -46 351 1 191 59 0 59 chrX 147212906 147212940 -15386990 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1847 43 0 0 chrX 147212985 147213216 -15386714 - L1PA7 LINE L1 -20 6134 5904 218 246 35 0 chrX 147213235 147213292 -15386638 + L2 LINE L2 3255 3313 0 346 331 37 29 chrX 147213735 147213984 -15385946 + MIR SINE MIR 10 256 -6 305 298 112 19 chrX 147215943 147216104 -15383826 - MIR SINE MIR -6 256 81 218 213 21 0 chrX 147217582 147217629 -15382301 + (TG)n Simple_repeat Simple_repeat 1 48 0 228 224 122 10 chrX 147217666 147217764 -15382166 + L1ME4a LINE L1 5992 6100 -21 192 179 0 0 chrX 147217862 147217901 -15382029 + (CA)n Simple_repeat Simple_repeat 1 39 0 1961 148 3 3 chrX 147217918 147218223 -15381707 + AluSx SINE Alu 1 305 -7 351 225 281 0 chrX 147218541 147218630 -15381300 + MER81 DNA DNA 1 114 0 1170 153 5 5 chrX 147218668 147218870 -15381060 - L1MC1 LINE L1 -1 6332 6131 2053 218 28 54 chrX 147219839 147220187 -15379743 - MER82 DNA MER2_type -31 622 291 2475 47 3 37 chrX 147220187 147220509 -15379421 + AluY SINE Alu 1 311 0 2053 218 28 54 chrX 147220509 147220693 -15379237 - MER82 DNA MER2_type -362 291 104 573 198 249 116 chrX 147220693 147221047 -15378883 - MER57A LTR ERV1 0 403 3 419 181 24 12 chrX 147221061 147221144 -15378786 - MER82 DNA MER2_type -551 102 19 671 227 21 0 chrX 147221404 147221545 -15378385 + L1ME LINE L1 5453 5596 -568 400 380 85 9 chrX 147221740 147222058 -15377872 + L2 LINE L2 2446 2787 -527 28 29 0 0 chrX 147222213 147222248 -15377682 + AT_rich Low_complexity Low_complexity 1 35 0 522 335 12 0 chrX 147222662 147222832 -15377098 - MIR SINE MIR -60 202 31 985 169 15 35 chrX 147224002 147224203 -15375727 + MER3 DNA MER1_type 3 199 -10 241 245 0 0 chrX 147224458 147224511 -15375419 + L2 LINE L2 3261 3313 0 788 294 44 34 chrX 147224821 147225083 -15374847 + MIR SINE MIR 1 261 -1 218 259 49 62 chrX 147225076 147225157 -15374773 - L2 LINE L2 -51 3262 3183 * 2229 168 51 12 chrX 147225158 147225568 -15374362 + MSTB LTR MaLR 1 426 0 585 200 31 12 chrX 147225569 147225729 -15374201 - Looper DNA T2_type -13 1545 1383 2737 188 47 44 chrX 147225732 147226169 -15373761 - Looper DNA T2_type -600 958 517 2216 164 73 27 chrX 147226169 147226516 -15373414 - LOR1b LTR ERV1 -2 459 86 2384 86 0 0 chrX 147226516 147226808 -15373122 - AluSc SINE Alu -17 292 1 2216 164 73 27 chrX 147226808 147226899 -15373031 - LOR1b LTR ERV1 -375 86 1 2737 188 47 44 chrX 147226899 147227207 -15372723 - Looper DNA T2_type -1041 517 211 1253 223 4 8 chrX 147227227 147227474 -15372456 - AluJb SINE Alu -66 246 1 932 187 54 5 chrX 147227478 147227681 -15372249 - Looper DNA T2_type -1339 219 7 462 357 58 15 chrX 147227798 147228158 -15371772 - L2 LINE L2 -200 3072 2698 6275 29 0 0 chrX 147228198 147228933 -15370997 + L1PA3 LINE L1 5415 6149 -6 644 256 108 5 chrX 147229205 147229408 -15370522 - MER58A DNA MER1_type 0 224 1 308 276 67 37 chrX 147229705 147229839 -15370091 - HAL1b LINE L1 -457 891 754 1784 198 28 23 chrX 147229907 147230079 -15369851 + MSTD LTR MaLR 1 171 -225 2183 110 0 0 chrX 147230079 147230380 -15369550 + AluSx SINE Alu 1 301 -11 1784 198 28 23 chrX 147230380 147230601 -15369329 + MSTD LTR MaLR 171 396 0 5570 241 71 42 chrX 147230603 147230831 -15369099 + MSTD-int LTR MaLR 2 222 -1513 2097 120 16 3 chrX 147230831 147231113 -15368817 + AluSx SINE Alu 1 289 -23 787 67 17 0 chrX 147231113 147231232 -15368698 + (GA)n Simple_repeat Simple_repeat 2 122 0 2097 120 16 3 chrX 147231232 147231257 -15368673 + AluSx SINE Alu 289 312 0 5570 241 71 42 chrX 147231257 147232714 -15367216 + MSTD-int LTR MaLR 222 1735 0 1387 201 76 69 chrX 147232714 147233107 -15366823 + MSTD LTR MaLR 1 396 0 2445 50 0 7 chrX 147233470 147233770 -15366160 - AluY SINE Alu -13 298 1 401 258 46 62 chrX 147233786 147233980 -15365950 - HAL1 LINE L1 -918 1589 1399 22 0 0 0 chrX 147234003 147234025 -15365905 + AT_rich Low_complexity Low_complexity 1 22 0 649 251 123 100 chrX 147234106 147234776 -15365154 - L1ME3A LINE L1 -26 6144 5452 427 312 63 37 chrX 147235294 147235483 -15364447 - MIR SINE MIR -51 211 18 252 279 163 27 chrX 147235492 147235639 -15364291 - MIR SINE MIR -1 261 95 180 0 0 0 chrX 147235673 147235693 -15364237 + (A)n Simple_repeat Simple_repeat 1 20 0 265 295 16 0 chrX 147236058 147236119 -15363811 - MIR SINE MIR -118 90 29 42940 29 22 2 chrX 147236364 147242396 -15357534 - L1PA3 LINE L1 0 6155 2 185 232 14 0 chrX 147242949 147243018 -15356912 + (TA)n Simple_repeat Simple_repeat 2 71 0 2949 214 33 18 chrX 147243350 147244071 -15355859 - L1 LINE L1 -985 6182 5451 323 77 16 110 chrX 147244077 147244259 -15355671 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 7866 245 46 28 chrX 147244267 147245089 -15354841 - L1 LINE L1 -1724 5443 4637 1088 92 0 0 chrX 147245089 147245242 -15354688 - L1PA6 LINE L1 -6 6148 5996 7866 245 46 28 chrX 147245242 147246564 -15353366 - L1 LINE L1 -2530 4637 3340 2007 138 3 0 chrX 147246564 147246885 -15353045 - AluSx SINE Alu 0 312 1 7866 245 46 28 chrX 147246885 147247838 -15352092 - L1 LINE L1 -3827 3340 2533 2161 98 3 14 chrX 147247838 147248158 -15351772 + AluSp SINE Alu 1 317 0 7866 245 46 28 chrX 147248158 147249090 -15350840 - L1 LINE L1 -4634 2533 1619 2790 108 7 32 chrX 147250122 147250356 -15349574 - L1MA1 LINE L1 0 6302 6084 1595 174 10 39 chrX 147250356 147250661 -15349269 + AluJb SINE Alu 1 296 -16 2790 108 7 32 chrX 147250661 147250887 -15349043 - L1MA1 LINE L1 -218 6084 5854 24 0 0 0 chrX 147251190 147251214 -15348716 + AT_rich Low_complexity Low_complexity 1 24 0 181 259 0 86 chrX 147253082 147253140 -15346790 - L2 LINE L2 -1 3271 3219 375 400 6 12 chrX 147254132 147254302 -15345628 + L2 LINE L2 2891 3059 -213 2046 82 64 7 chrX 147254507 147254788 -15345142 + AluY SINE Alu 1 297 -14 189 147 0 0 chrX 147255075 147255109 -15344821 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 4649 104 78 3 chrX 147255113 147255871 -15344059 + L1PA8 LINE L1 2995 3809 -2337 784 40 0 0 chrX 147255869 147255968 -15343962 - L1P LINE L1 -921 5225 5127 * 10655 96 32 1 chrX 147255968 147258281 -15341649 + L1PA8 LINE L1 3819 6161 -11 189 147 0 0 chrX 147258398 147258432 -15341498 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 13919 162 21 19 chrX 147259540 147259886 -15340044 + L1MA1 LINE L1 1402 1746 -5975 288 0 0 0 chrX 147259886 147259918 -15340012 + (GA)n Simple_repeat Simple_repeat 1 32 0 13919 162 21 19 chrX 147259918 147261826 -15338104 + L1MA1 LINE L1 1746 3650 -4071 839 149 0 0 chrX 147261826 147261947 -15337983 + 5S rRNA rRNA 1 121 0 13919 162 21 19 chrX 147261947 147265040 -15334890 + L1MA1 LINE L1 3650 6762 -959 2260 115 0 3 chrX 147265040 147265352 -15334578 - AluSq SINE Alu -2 311 1 13919 162 21 19 chrX 147265352 147266314 -15333616 + L1MA1 LINE L1 6762 7721 0 15330 123 30 27 chrX 147266321 147269699 -15330231 + MER4B-int LTR ERV1 3324 6758 0 3375 136 19 6 chrX 147269706 147270301 -15329629 + MER4B LTR ERV1 7 774 -5 188 337 17 111 chrX 147270336 147270399 -15329531 - MIR3 SINE MIR -30 178 111 3010 170 90 15 chrX 147270399 147270998 -15328932 + LTR48B LTR ERV1 1 644 0 188 337 17 111 chrX 147270998 147271106 -15328824 - MIR3 SINE MIR -97 111 23 3863 65 2 0 chrX 147271425 147271919 -15328011 - L1PA7 LINE L1 -1 6153 5659 2846 198 14 5 chrX 147272246 147272812 -15327118 + MER34C LTR ERV1 7 577 -8 3395 163 16 42 chrX 147272819 147273489 -15326441 + MER39B LTR ERV1 1 653 0 207 114 0 0 chrX 147274099 147274134 -15325796 + (A)n Simple_repeat Simple_repeat 1 35 0 2709 75 95 7 chrX 147274149 147274561 -15325369 - LTR7 LTR ERV1 -2 448 1 2351 95 50 13 chrX 147274561 147274939 -15324991 - HERVH LTR ERV1 0 7713 7322 1478 118 0 5 chrX 147274937 147275158 -15324772 - HERVH LTR ERV1 -1894 5819 5600 * 4370 130 1 13 chrX 147275159 147275829 -15324101 - HERVH LTR ERV1 -2564 5149 4488 5409 125 4 2 chrX 147275838 147276680 -15323250 - HERVH LTR ERV1 -3731 3982 3140 * 14750 94 17 19 chrX 147276659 147278865 -15321065 - HERVH LTR ERV1 -4718 2995 793 2997 96 0 31 chrX 147278870 147279320 -15320610 - HERVH LTR ERV1 -7277 436 1 2582 80 97 12 chrX 147279322 147279735 -15320195 - LTR7 LTR ERV1 -2 448 1 299 241 0 0 chrX 147279873 147279930 -15320000 + MLT1E3 LTR MaLR 51 107 -486 3733 174 46 14 chrX 147279930 147280621 -15319309 - LTR39 LTR ERV1 0 783 71 1233 282 34 18 chrX 147280654 147281126 -15318804 + MLT1E3 LTR MaLR 100 621 -3 218 179 26 0 chrX 147281441 147281480 -15318450 + (TG)n Simple_repeat Simple_repeat 1 40 0 204 40 0 0 chrX 147281480 147281505 -15318425 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 1103 176 85 108 chrX 147281923 147282384 -15317546 + LTR7 LTR ERV1 1 450 0 1613 179 126 18 chrX 147282428 147282818 -15317112 + MSTB1 LTR MaLR 1 432 0 378 236 57 14 chrX 147282978 147283118 -15316812 - L1M4 LINE L1 -780 5366 5221 229 209 30 15 chrX 147283406 147283473 -15316457 + (TA)n Simple_repeat Simple_repeat 1 68 0 28 48 0 0 chrX 147283562 147283604 -15316326 + AT_rich Low_complexity Low_complexity 1 42 0 2193 317 75 53 chrX 147283937 147284747 -15315183 + L1MA9 LINE L1 11 869 -5412 4139 57 0 0 chrX 147284747 147285260 -15314670 + L1PA8 LINE L1 5643 6155 -17 2193 317 75 53 chrX 147285260 147285937 -15313993 + L1MA9 LINE L1 869 1530 -4751 * 5790 195 57 6 chrX 147285936 147288275 -15311655 + L1MA9 LINE L1 4046 6516 0 2274 96 3 3 chrX 147289305 147289618 -15310312 + AluSp SINE Alu 1 313 0 408 290 30 24 chrX 147290739 147290915 -15309015 + MIR SINE MIR 62 236 -26 203 238 0 0 chrX 147291217 147291259 -15308671 - L2 LINE L2 -8 3305 3264 275 287 189 18 chrX 147291493 147291657 -15308273 - MIR SINE MIR -50 212 21 730 80 0 18 chrX 147292286 147292399 -15307531 + (TTTTC)n Simple_repeat Simple_repeat 3 113 0 282 56 0 0 chrX 147292700 147292736 -15307194 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 1027 149 35 6 chrX 147292743 147292917 -15307013 - AluJ SINE Alu 0 312 134 601 142 33 0 chrX 147292925 147293045 -15306885 + T-rich Low_complexity Low_complexity 5 128 0 975 150 36 6 chrX 147293068 147293235 -15306695 - AluJ SINE Alu -7 305 134 584 128 24 16 chrX 147293239 147293364 -15306566 + CT-rich Low_complexity Low_complexity 3 128 0 731 163 16 0 chrX 147293384 147293513 -15306417 - AluJ SINE Alu -169 133 3 508 285 38 6 chrX 147294072 147294230 -15305700 - MER117 DNA MER1_type -26 171 9 255 265 98 39 chrX 147294419 147294725 -15305205 - L1ME4a LINE L1 -1 6120 5797 607 285 35 18 chrX 147294744 147294870 -15305060 - L2 LINE L2 -1 3312 3179 195 100 0 0 chrX 147294870 147294900 -15305030 + (TG)n Simple_repeat Simple_repeat 2 31 0 607 285 35 18 chrX 147294900 147295001 -15304929 - L2 LINE L2 -134 3179 3081 297 303 99 53 chrX 147295080 147295232 -15304698 - L2 LINE L2 -405 2909 2751 2348 92 0 0 chrX 147295301 147295595 -15304335 - AluSx SINE Alu -18 294 1 216 238 0 0 chrX 147295791 147295833 -15304097 + CT-rich Low_complexity Low_complexity 3 44 0 29 60 0 0 chrX 147295908 147295958 -15303972 + AT_rich Low_complexity Low_complexity 1 50 0 1097 142 42 0 chrX 147296190 147296402 -15303528 - L1MA9 LINE L1 -4 6308 6088 1096 344 49 17 chrX 147296926 147297397 -15302533 + L2 LINE L2 2808 3293 -20 22 0 0 0 chrX 147297474 147297496 -15302434 + AT_rich Low_complexity Low_complexity 1 22 0 447 354 43 6 chrX 147300360 147300521 -15299409 - L2 LINE L2 -4 3268 3102 279 146 0 0 chrX 147301287 147301335 -15298595 - L1MB2 LINE L1 -25 6146 6099 * 729 213 39 16 chrX 147301331 147301525 -15298405 - L1MA4 LINE L1 -102 6049 5852 226 226 155 12 chrX 147301997 147302081 -15297849 - MLT1J1 LTR MaLR -5 441 346 284 261 84 70 chrX 147302277 147302419 -15297511 - L2 LINE L2 -15 3298 3155 887 319 172 16 chrX 147302559 147303180 -15296750 - L2 LINE L2 -414 2900 2183 311 226 94 75 chrX 147303190 147303296 -15296634 + MER94 DNA DNA 6 113 -21 215 336 28 9 chrX 147303314 147303421 -15296509 - L2 LINE L2 -1194 2120 2012 227 240 0 0 chrX 147303548 147303598 -15296332 + L2 LINE L2 3263 3312 -1 528 286 32 38 chrX 147303601 147303786 -15296144 - L2 LINE L2 -1366 1948 1765 205 222 22 0 chrX 147304736 147304781 -15295149 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 26 30 0 0 chrX 147305232 147305265 -15294665 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 147305701 147305722 -15294208 + AT_rich Low_complexity Low_complexity 1 21 0 297 285 44 57 chrX 147305892 147306050 -15293880 - MIR SINE MIR -51 211 56 503 160 55 72 chrX 147306837 147306933 -15292997 + MER53 DNA DNA 12 105 -84 2323 68 0 23 chrX 147306933 147307241 -15292689 - AluY SINE Alu -10 301 1 503 160 55 72 chrX 147307241 147307325 -15292605 + MER53 DNA DNA 105 189 0 284 322 52 0 chrX 147307537 147307652 -15292278 + MIR SINE MIR 90 210 -52 202 271 0 0 chrX 147307719 147307767 -15292163 + MIR SINE MIR 215 262 0 207 208 19 0 chrX 147307972 147308025 -15291905 + (TTCA)n Simple_repeat Simple_repeat 3 56 0 189 256 0 0 chrX 147308033 147308072 -15291858 + MIR SINE MIR 213 251 -11 500 305 66 46 chrX 147308166 147308547 -15291383 - L2 LINE L2 -208 3064 2662 1859 94 24 17 chrX 147308913 147309210 -15290720 + L1MA2 LINE L1 6006 6304 0 198 191 0 0 chrX 147309876 147309918 -15290012 + (CACG)n Simple_repeat Simple_repeat 2 43 0 1335 210 113 9 chrX 147311270 147311599 -15288331 - MLT1A1 LTR MaLR 0 365 3 23 0 0 0 chrX 147312261 147312284 -15287646 + AT_rich Low_complexity Low_complexity 1 23 0 2512 157 18 23 chrX 147313215 147313649 -15286281 + MSTB1 LTR MaLR 1 432 0 213 94 0 0 chrX 147313834 147313866 -15286064 + (TC)n Simple_repeat Simple_repeat 2 33 0 1296 203 0 30 chrX 147313887 147314123 -15285807 - AluJo SINE Alu -83 229 1 6973 58 3 3 chrX 147314527 147316013 -15283917 - L1PA7 LINE L1 -4 6150 4665 4474 98 3 2 chrX 147316013 147316646 -15283284 + L1PA7 LINE L1 4012 4645 -1501 195 339 0 15 chrX 147316864 147316929 -15283001 + MIR SINE MIR 64 127 -135 6353 50 0 0 chrX 147316929 147317708 -15282222 + L1PA5 LINE L1 5376 6154 0 5668 232 10 4 chrX 147317732 147319108 -15280822 - L1 LINE L1 -1754 4392 3009 6211 152 16 4 chrX 147319111 147319802 -15280128 + L1PB1 LINE L1 4478 5159 -992 378 0 0 0 chrX 147319802 147319844 -15280086 + (TAA)n Simple_repeat Simple_repeat 2 43 0 6211 152 16 4 chrX 147319844 147320807 -15279123 + L1PB1 LINE L1 5159 6151 0 191 329 14 0 chrX 147320839 147320912 -15279018 + MIR SINE MIR 181 254 -8 960 234 9 18 chrX 147321625 147321851 -15278079 + MER58A DNA MER1_type 1 224 0 432 293 52 42 chrX 147321987 147322178 -15277752 - MIR SINE MIR -62 200 8 379 354 179 13 chrX 147322729 147323031 -15276899 + L2 LINE L2 2921 3272 0 38 39 0 0 chrX 147324164 147324216 -15275714 + AT_rich Low_complexity Low_complexity 1 52 0 444 308 21 0 chrX 147324349 147324501 -15275429 + MIR SINE MIR 37 191 -65 561 88 0 0 chrX 147325366 147325446 -15274484 + (TC)n Simple_repeat Simple_repeat 1 80 0 207 246 105 0 chrX 147325610 147325667 -15274263 + MIR SINE MIR 102 164 -98 189 74 0 0 chrX 147326150 147326177 -15273753 + (TAG)n Simple_repeat Simple_repeat 1 27 0 182 330 93 34 chrX 147326681 147326799 -15273131 + MIR SINE MIR 16 140 -68 893 239 16 77 chrX 147327129 147327376 -15272554 + MLT1G LTR MaLR 49 280 -310 385 228 121 35 chrX 147327660 147327854 -15272076 + MLT1H1 LTR MaLR 402 590 0 450 113 0 0 chrX 147328553 147328615 -15271315 + MER5A DNA MER1_type 9 70 -119 42800 31 22 3 chrX 147328621 147334627 -15265303 + L1HS LINE L1 4 6131 -24 250 45 45 0 chrX 147334627 147334671 -15265259 + (TAAAA)n Simple_repeat Simple_repeat 4 49 0 42800 31 22 3 chrX 147334671 147334697 -15265233 + L1HS LINE L1 6131 6155 0 293 209 229 9 chrX 147334704 147334809 -15265121 + MER5A DNA MER1_type 61 188 -1 295 197 42 63 chrX 147336045 147336187 -15263743 + L1MA8 LINE L1 6089 6227 -64 312 114 0 0 chrX 147336205 147336249 -15263681 - L1MA8 LINE L1 -45 6246 6203 269 258 25 19 chrX 147336250 147336409 -15263521 + (TA)n Simple_repeat Simple_repeat 1 160 0 270 159 0 0 chrX 147336409 147336453 -15263477 + L1MA8 LINE L1 6203 6246 -45 260 220 37 9 chrX 147336454 147336563 -15263367 + (TA)n Simple_repeat Simple_repeat 1 112 0 335 217 24 0 chrX 147336563 147336646 -15263284 + L1MA8 LINE L1 6203 6287 -4 275 339 73 62 chrX 147336844 147336874 -15263056 - L2 LINE L2 -456 2858 2830 2443 148 23 28 chrX 147336874 147337308 -15262622 - MSTB1 LTR MaLR 0 432 1 275 339 73 62 chrX 147337308 147337661 -15262269 - L2 LINE L2 -484 2830 2471 374 289 23 23 chrX 147337686 147337814 -15262116 + MER94 DNA DNA 5 132 -2 227 111 0 22 chrX 147338349 147338394 -15261536 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 378 323 49 45 chrX 147339105 147339328 -15260602 - MIR SINE MIR -37 225 2 5905 45 5 35 chrX 147339926 147340733 -15259197 - L1PA4 LINE L1 0 6155 5373 915 346 52 7 chrX 147341234 147341653 -15258277 - LTR16A LTR ERVL -5 445 8 486 315 36 18 chrX 147342179 147342401 -15257529 - HERVL LTR ERVL -694 4960 4735 1576 264 10 5 chrX 147342839 147343244 -15256686 + L1MCb LINE L1 569 975 -5070 249 163 0 0 chrX 147343254 147343303 -15256627 + (CA)n Simple_repeat Simple_repeat 1 49 0 1682 240 47 12 chrX 147343315 147343919 -15256011 + L1MCb LINE L1 972 1799 -4946 391 356 33 11 chrX 147344226 147344406 -15255524 - MER5A DNA MER1_type -1 188 5 271 299 41 10 chrX 147344494 147344591 -15255339 + MIR SINE MIR 163 262 0 28 71 0 0 chrX 147344796 147344852 -15255078 + AT_rich Low_complexity Low_complexity 1 56 0 377 281 28 11 chrX 147344951 147345129 -15254801 + L1M4 LINE L1 4493 4673 -1473 222 91 0 0 chrX 147345347 147345380 -15254550 + (CA)n Simple_repeat Simple_repeat 1 33 0 225 250 0 0 chrX 147345561 147345609 -15254321 - L1MCa LINE L1 -5734 830 783 991 279 48 71 chrX 147345714 147346291 -15253639 - L1MCa LINE L1 -5481 564 1 204 338 167 9 chrX 147347029 147347239 -15252691 + MIR SINE MIR 8 250 -12 226 117 67 83 chrX 147347244 147347304 -15252626 + MLT1E2 LTR MaLR 2 60 -566 7158 58 0 0 chrX 147347345 147348235 -15251695 - L1PA7 LINE L1 -11 6143 5254 512 168 0 0 chrX 147348250 147348345 -15251585 + L1MA5 LINE L1 6201 6295 -5 342 259 89 57 chrX 147348359 147348517 -15251413 + L1ME2 LINE L1 883 1045 -5025 1361 284 97 25 chrX 147348535 147349371 -15250559 + L1ME2 LINE L1 1125 2020 -4241 2084 192 48 12 chrX 147349388 147349800 -15250130 - MSTA LTR MaLR -1 427 1 929 250 39 17 chrX 147349903 147350135 -15249795 + MLT1E LTR MaLR 10 246 -347 412 212 0 12 chrX 147350123 147350208 -15249722 - MER20 DNA MER1_type -135 84 1 * 3514 271 65 40 chrX 147350214 147350941 -15248989 + L1ME2 LINE L1 2951 3658 -2440 1635 137 60 0 chrX 147350941 147351244 -15248686 - AluSg SINE Alu 0 335 18 3514 271 65 40 chrX 147351244 147351998 -15247932 + L1ME2 LINE L1 3658 4392 -1706 4005 33 14 2 chrX 147351998 147352486 -15247444 - L1PA3 LINE L1 -3 6152 5659 3514 271 65 40 chrX 147352486 147353976 -15245954 + L1ME2 LINE L1 4392 6011 -87 462 268 86 25 chrX 147353976 147354174 -15245756 - MER63A DNA MER1_type 0 210 1 3514 271 65 40 chrX 147354174 147354225 -15245705 + L1ME2 LINE L1 6011 6059 -39 216 67 0 0 chrX 147354584 147354614 -15245316 + (TG)n Simple_repeat Simple_repeat 1 30 0 380 278 26 35 chrX 147355410 147355525 -15244405 + MIR SINE MIR 12 125 -137 180 348 87 26 chrX 147355596 147355711 -15244219 + L2 LINE L2 3175 3296 -17 339 254 127 37 chrX 147355776 147355910 -15244020 - L1MC5 LINE L1 -53 7908 7763 227 401 117 6 chrX 147357013 147357175 -15242755 - L2 LINE L2 -9 3263 3084 200 333 0 33 chrX 147357310 147357400 -15242530 - MIR SINE MIR -39 223 137 * 1729 293 102 18 chrX 147357391 147358126 -15241804 + L2 LINE L2 1745 2541 -773 514 246 16 16 chrX 147358117 147358243 -15241687 - L2 LINE L2 0 3313 3188 * 934 266 9 5 chrX 147358259 147358481 -15241449 + L2 LINE L2 2517 2739 -575 476 244 59 98 chrX 147358485 147358772 -15241158 + L2 LINE L2 2962 3237 -76 275 307 70 18 chrX 147359727 147359841 -15240089 - L2 LINE L2 -12 3301 3182 742 224 66 6 chrX 147360082 147360265 -15239665 - MLT1E LTR MaLR -14 579 386 2551 49 7 0 chrX 147360399 147360706 -15239224 - AluY SINE Alu 0 311 3 401 263 112 66 chrX 147360736 147360995 -15238935 - MLT1I LTR MaLR -39 370 100 426 266 224 0 chrX 147361796 147361939 -15237991 - MER5A DNA MER1_type -11 178 4 255 250 28 28 chrX 147362605 147362677 -15237253 - MIR3 SINE MIR -28 180 109 27 0 0 0 chrX 147362865 147362892 -15237038 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chrX 147363573 147363596 -15236334 + AT_rich Low_complexity Low_complexity 1 23 0 233 302 52 26 chrX 147363812 147363928 -15236002 + MER20B DNA MER1_type 2 120 -663 2873 138 16 14 chrX 147363984 147364478 -15235452 - L1MC1 LINE L1 -9 6324 5830 256 258 43 124 chrX 147364479 147364665 -15235265 - L2 LINE L2 -163 3150 2980 2098 157 8 22 chrX 147364698 147365067 -15234863 - THE1B LTR MaLR 0 364 1 10709 99 28 3 chrX 147365074 147366609 -15233321 - THE1B-int LTR MaLR -7 1573 1 1816 123 80 37 chrX 147366609 147366958 -15232972 - THE1B LTR MaLR 0 364 1 471 35 0 0 chrX 147367461 147367518 -15232412 + (CA)n Simple_repeat Simple_repeat 2 58 0 6713 69 0 0 chrX 147368026 147369031 -15230899 - L1PA7 LINE L1 -1 6153 5143 341 309 79 34 chrX 147369178 147369356 -15230574 + MIR SINE MIR 77 262 0 2285 126 13 16 chrX 147370891 147371265 -15228665 - THE1C LTR MaLR 0 375 3 1817 110 10 28 chrX 147371267 147371558 -15228372 - THE1C-int LTR MaLR 0 1580 1295 * 3370 145 93 7 chrX 147371557 147372156 -15227774 - THE1C-int LTR MaLR -929 651 1 2165 138 19 26 chrX 147372156 147372534 -15227396 - THE1C LTR MaLR 0 375 1 29 0 0 0 chrX 147373299 147373328 -15226602 + AT_rich Low_complexity Low_complexity 1 29 0 2067 125 0 0 chrX 147373733 147374022 -15225908 - AluSc SINE Alu -20 289 1 24 32 0 0 chrX 147374285 147374316 -15225614 + AT_rich Low_complexity Low_complexity 1 31 0 264 285 103 93 chrX 147374386 147374803 -15225127 - LTR33 LTR ERVL -2 519 99 208 394 10 0 chrX 147375160 147375259 -15224671 - L2 LINE L2 0 3313 3214 596 295 103 26 chrX 147375681 147375959 -15223971 - LTR33A LTR ERVL -183 340 59 246 241 0 0 chrX 147376257 147376315 -15223615 + L1MCa LINE L1 2006 2063 -4363 216 97 0 0 chrX 147376329 147376360 -15223570 + (TAA)n Simple_repeat Simple_repeat 3 33 0 2247 146 23 15 chrX 147376473 147376870 -15223060 - L1PA10 LINE L1 0 6168 5769 22 70 0 0 chrX 147376906 147376949 -15222981 + AT_rich Low_complexity Low_complexity 1 43 0 418 275 5 83 chrX 147377140 147377267 -15222663 + MER5B DNA MER1_type 1 110 -68 2593 37 0 0 chrX 147377267 147377565 -15222365 - AluY SINE Alu -13 298 1 418 275 5 83 chrX 147377565 147377630 -15222300 + MER5B DNA MER1_type 110 178 0 2064 135 52 19 chrX 147378620 147378983 -15220947 - THE1C LTR MaLR 0 375 1 449 321 54 23 chrX 147379011 147379232 -15220698 + MIR SINE MIR 11 238 -24 521 293 24 24 chrX 147379598 147379765 -15220165 - MIR3 SINE MIR -7 201 35 797 220 12 12 chrX 147379901 147380069 -15219861 - MER5A DNA MER1_type -1 188 21 339 261 45 27 chrX 147383216 147383327 -15216603 - MIR SINE MIR -93 169 57 1447 189 14 0 chrX 147383346 147383621 -15216309 - L1MB5 LINE L1 -9 6165 5887 182 219 0 0 chrX 147383692 147383733 -15216197 + L2 LINE L2 3273 3313 0 1511 166 25 121 chrX 147384801 147385259 -15214671 - L1MD1 LINE L1 -15 6227 5810 1436 210 36 6 chrX 147385254 147385583 -15214347 - L1MA9 LINE L1 -37 6275 5937 * 941 92 56 82 chrX 147386202 147386397 -15213533 - L1MB3 LINE L1 -2 6181 5992 207 289 114 54 chrX 147386576 147386725 -15213205 + MIR SINE MIR 6 163 -99 * 447 335 28 6 chrX 147386723 147386905 -15213025 + L2 LINE L2 1728 1913 -1401 666 333 149 20 chrX 147387616 147388131 -15211799 + L2 LINE L2 2745 3307 -6 2206 102 0 14 chrX 147388194 147388489 -15211441 + AluSx SINE Alu 1 291 -21 429 20 0 0 chrX 147388489 147388539 -15211391 + (TA)n Simple_repeat Simple_repeat 2 51 0 241 293 0 0 chrX 147389787 147389845 -15210085 + (ATG)n Simple_repeat Simple_repeat 2 59 0 325 312 46 9 chrX 147389855 147389964 -15209966 + L2 LINE L2 3184 3296 -17 3622 222 63 23 chrX 147389971 147391837 -15208093 - L1MA9 LINE L1 -38 6274 4342 650 350 23 0 chrX 147391868 147392088 -15207842 - MIR SINE MIR -37 225 1 427 350 75 31 chrX 147392619 147392845 -15207085 + MIR SINE MIR 12 247 -15 585 123 0 0 chrX 147393929 147394035 -15205895 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 382 272 8 56 chrX 147394045 147394170 -15205760 + L2 LINE L2 3195 3313 0 580 333 41 33 chrX 147394266 147394509 -15205421 + MIR SINE MIR 12 256 -6 1336 206 61 71 chrX 147394978 147395372 -15204558 + MLT1B LTR MaLR 1 390 0 1028 271 34 60 chrX 147395517 147395986 -15203944 + LTR16A1 LTR ERVL 1 457 0 30 0 0 0 chrX 147397405 147397435 -15202495 + AT_rich Low_complexity Low_complexity 1 30 0 499 319 79 38 chrX 147397466 147397808 -15202122 - L3 LINE CR1 -82 1495 1140 213 39 0 0 chrX 147398651 147398677 -15201253 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1601 117 29 12 chrX 147399113 147399397 -15200533 + AluSg SINE Alu 40 327 0 268 271 40 73 chrX 147399618 147399769 -15200161 + MIR3 SINE MIR 58 203 -5 291 114 0 0 chrX 147400970 147401014 -15198916 + (T)n Simple_repeat Simple_repeat 1 44 0 531 168 0 56 chrX 147401600 147401725 -15198205 - L1 LINE L1 -829 5317 5200 288 0 0 0 chrX 147401726 147401758 -15198172 + (TC)n Simple_repeat Simple_repeat 2 33 0 501 149 8 16 chrX 147401758 147401879 -15198051 + (TA)n Simple_repeat Simple_repeat 2 121 0 2221 185 15 13 chrX 147401880 147402335 -15197595 - L1 LINE L1 -971 5175 4720 2291 216 4 0 chrX 147402336 147402809 -15197121 + L1MA6 LINE L1 5802 6276 -24 394 303 7 40 chrX 147403298 147403450 -15196480 - L2 LINE L2 -3 3310 3164 2148 236 36 78 chrX 147403450 147404097 -15195833 + HAL1b LINE L1 237 821 -527 2311 95 0 0 chrX 147404097 147404391 -15195539 + AluSg SINE Alu 1 294 -16 2148 236 36 78 chrX 147404391 147404838 -15195092 + HAL1b LINE L1 821 1285 -63 302 391 0 0 chrX 147404994 147405109 -15194821 + MIR SINE MIR 29 143 -65 620 309 44 33 chrX 147405178 147405450 -15194480 - LTR16C LTR ERVL -17 474 200 401 173 173 31 chrX 147405472 147405634 -15194296 - MER53 DNA DNA -1 188 4 21 36 0 0 chrX 147406217 147406245 -15193685 + AT_rich Low_complexity Low_complexity 1 28 0 1077 202 5 10 chrX 147406245 147406448 -15193482 - AluJb SINE Alu -26 286 85 228 282 55 36 chrX 147408229 147408339 -15191591 - L1ME LINE L1 -463 5658 5547 180 306 116 58 chrX 147408744 147408865 -15191065 - L2 LINE L2 0 3272 3145 414 0 0 0 chrX 147409444 147409490 -15190440 + (TA)n Simple_repeat Simple_repeat 1 46 0 428 321 8 0 chrX 147409577 147409708 -15190222 - L2 LINE L2 -2 3311 3180 2860 181 14 16 chrX 147409724 147410275 -15189655 + MER89 LTR ERV1 1 550 -9 1649 292 61 49 chrX 147410277 147411199 -15188731 - L2 LINE L2 -137 3176 2244 428 227 41 10 chrX 147411196 147411293 -15188637 + MIR SINE MIR 57 156 -106 * 4473 133 158 38 chrX 147411416 147412438 -15187492 + MER11B LTR ERVK 1 1236 0 32 26 0 0 chrX 147412538 147412577 -15187353 + AT_rich Low_complexity Low_complexity 1 39 0 10794 170 17 21 chrX 147412941 147414457 -15185473 - L1MA2 LINE L1 -2 7721 6200 3302 67 4 9 chrX 147414457 147414907 -15185023 + LTR7 LTR ERV1 1 448 -2 10794 170 17 21 chrX 147414907 147416755 -15183175 - L1MA2 LINE L1 -1523 6200 4377 8841 221 68 7 chrX 147416740 147418598 -15181332 - L1MA2 LINE L1 -5576 1989 18 * 494 291 84 0 chrX 147418697 147418876 -15181054 - MIR SINE MIR -16 246 53 2054 151 97 3 chrX 147419207 147419598 -15180332 - MSTA LTR MaLR 0 428 1 21 36 0 0 chrX 147419863 147419891 -15180039 + AT_rich Low_complexity Low_complexity 1 28 0 894 189 0 0 chrX 147419894 147420074 -15179856 + CT-rich Low_complexity Low_complexity 1 180 0 327 49 0 0 chrX 147420076 147420117 -15179813 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 842 144 0 0 chrX 147420117 147420256 -15179674 - L1PB1 LINE L1 -1 6150 6012 234 291 82 55 chrX 147420903 147421013 -15178917 + L2 LINE L2 3005 3117 -155 24 32 0 0 chrX 147421051 147421082 -15178848 + AT_rich Low_complexity Low_complexity 1 31 0 695 293 68 24 chrX 147421181 147421430 -15178500 - MIR SINE MIR 0 262 3 5135 180 2 6 chrX 147421736 147422579 -15177351 + L1PB1 LINE L1 2 841 -6740 4257 129 18 1 chrX 147422576 147423243 -15176687 + L1PB1 LINE L1 2107 2784 -4797 * 7303 184 31 9 chrX 147423240 147425116 -15174814 + L1PB1 LINE L1 5008 6951 -638 387 0 0 0 chrX 147425116 147425159 -15174771 + (TAA)n Simple_repeat Simple_repeat 3 45 0 7303 184 31 9 chrX 147425159 147425808 -15174122 + L1PB1 LINE L1 6951 7584 -5 10218 166 48 44 chrX 147425833 147427952 -15171978 - L1M1 LINE L1 -4257 3308 1181 2064 149 33 30 chrX 147427952 147428315 -15171615 + THE1B LTR MaLR 1 364 0 9940 131 10 2 chrX 147428315 147429762 -15170168 + THE1B-int LTR MaLR 1 1458 -122 4633 52 23 12 chrX 147429762 147430454 -15169476 + MER11A LTR ERVK 424 1263 -3 2056 133 42 31 chrX 147430454 147430808 -15169122 + THE1B LTR MaLR 5 362 -2 5279 209 34 16 chrX 147430827 147430871 -15169059 - L1M1 LINE L1 -6397 1168 1126 2132 114 46 60 chrX 147430871 147431240 -15168690 + THE1B LTR MaLR 1 364 0 5279 209 34 16 chrX 147431240 147432331 -15167599 - L1M1 LINE L1 -6439 1126 13 2811 253 37 39 chrX 147432331 147433455 -15166475 + L1M4c LINE L1 908 2119 -4265 258 140 35 0 chrX 147433724 147433781 -15166149 + L1MC4 LINE L1 6647 6705 -1337 23 78 0 0 chrX 147433960 147434011 -15165919 + AT_rich Low_complexity Low_complexity 1 51 0 430 344 41 82 chrX 147434547 147435146 -15164784 - L2 LINE L2 -5 3267 2700 354 378 62 8 chrX 147435249 147435619 -15164311 - L2 LINE L2 -815 2499 2110 512 326 99 40 chrX 147435896 147436177 -15163753 - L1ME LINE L1 -363 5799 5483 6665 32 0 10 chrX 147436177 147436986 -15162944 + L1PA4 LINE L1 5355 6155 0 512 326 99 40 chrX 147436986 147437127 -15162803 - L1ME LINE L1 -679 5483 5352 254 225 28 14 chrX 147437158 147437229 -15162701 - L1ME LINE L1 -868 5278 5207 353 290 0 0 chrX 147437461 147437568 -15162362 - L1ME LINE L1 -1300 4846 4740 307 220 100 20 chrX 147437820 147437920 -15162010 - MIR SINE MIR -23 239 132 2510 54 0 0 chrX 147437920 147438218 -15161712 - AluY SINE Alu -13 298 1 204 333 0 61 chrX 147439300 147439399 -15160531 + MER5A DNA MER1_type 1 93 -96 285 51 0 0 chrX 147440050 147440089 -15159841 + (TG)n Simple_repeat Simple_repeat 1 39 0 4215 29 0 17 chrX 147440627 147441149 -15158781 - L1PA4 LINE L1 0 6155 5643 299 182 26 52 chrX 147441630 147441707 -15158223 + L2 LINE L2 3239 3313 0 1016 202 60 38 chrX 147445330 147445647 -15154283 + MER33 DNA MER1_type 1 324 0 594 264 60 12 chrX 147447896 147448063 -15151867 - MIR SINE MIR -70 192 18 784 287 0 34 chrX 147449413 147449650 -15150280 + MIR SINE MIR 15 243 -19 399 336 8 8 chrX 147449757 147449876 -15150054 + L2 LINE L2 3154 3272 0 798 274 129 77 chrX 147450458 147450940 -15148990 + L1ME LINE L1 5312 5819 -359 227 324 83 19 chrX 147450974 147451082 -15148848 - MIR SINE MIR -54 208 94 2387 77 0 0 chrX 147451497 147451794 -15148136 - AluY SINE Alu -14 297 1 186 103 0 0 chrX 147452875 147452904 -15147026 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4784 162 20 11 chrX 147453330 147454000 -15145930 - L1PA13 LINE L1 0 6163 5501 231 88 0 0 chrX 147454000 147454034 -15145896 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4784 162 20 11 chrX 147454034 147455002 -15144928 - L1PA13 LINE L1 -662 5501 4405 241 288 0 0 chrX 147455389 147455448 -15144482 + L2 LINE L2 3214 3272 0 395 267 124 60 chrX 147456860 147456966 -15142964 - L2 LINE L2 0 3313 3215 7691 60 19 10 chrX 147456966 147457964 -15141966 - LTR13 LTR ERVK 0 1007 1 395 267 124 60 chrX 147457964 147458005 -15141925 - L2 LINE L2 -98 3215 3178 2327 88 0 0 chrX 147458005 147458300 -15141630 + AluSc SINE Alu 1 295 -14 395 267 124 60 chrX 147458300 147458368 -15141562 - L2 LINE L2 -135 3178 3083 235 369 85 14 chrX 147458385 147458526 -15141404 - L2 LINE L2 -3128 186 36 22 35 0 0 chrX 147458778 147458807 -15141123 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 147460868 147460889 -15139041 + AT_rich Low_complexity Low_complexity 1 21 0 223 238 50 50 chrX 147461087 147461112 -15138818 + MIR SINE MIR 68 92 -170 1865 156 56 17 chrX 147461112 147461471 -15138459 - THE1C LTR MaLR -2 373 1 223 238 50 50 chrX 147461471 147461546 -15138384 + MIR SINE MIR 91 168 -94 463 271 49 35 chrX 147461714 147461858 -15138072 + L2 LINE L2 3168 3313 0 2359 121 8 8 chrX 147461933 147462298 -15137632 + L1PB1 LINE L1 5787 6151 0 24 0 0 0 chrX 147462502 147462526 -15137404 + AT_rich Low_complexity Low_complexity 1 24 0 647 263 10 39 chrX 147463010 147463215 -15136715 + MER20 DNA MER1_type 20 218 -1 258 259 118 39 chrX 147463655 147464096 -15135834 - L1M4 LINE L1 -2883 3263 2788 1646 209 67 6 chrX 147464111 147464455 -15135475 + L1M1 LINE L1 16 380 -7185 366 107 0 0 chrX 147464474 147464530 -15135400 + (TA)n Simple_repeat Simple_repeat 2 57 0 315 267 0 0 chrX 147464531 147464621 -15135309 - L1MC4 LINE L1 -1339 6703 6614 193 182 39 117 chrX 147464773 147464850 -15135080 - L2 LINE L2 -8 3305 3235 767 336 12 0 chrX 147464853 147465106 -15134824 - MIR SINE MIR -5 257 2 23 0 0 0 chrX 147466129 147466152 -15133778 + AT_rich Low_complexity Low_complexity 1 23 0 579 163 10 0 chrX 147466195 147466293 -15133637 - Tigger1 DNA MER2_type -367 2051 1953 315 71 0 0 chrX 147466478 147466520 -15133410 + (CA)n Simple_repeat Simple_repeat 2 43 0 2185 172 54 5 chrX 147466586 147466992 -15132938 + MSTA LTR MaLR 3 428 0 1914 215 24 85 chrX 147467166 147467780 -15132150 - MER92B LTR ERV1 -59 577 1 868 287 129 44 chrX 147468846 147468877 -15131053 + L2 LINE L2 2820 2847 -466 14264 151 14 5 chrX 147468877 147471274 -15128656 - Tigger1 DNA MER2_type 0 2418 1 868 287 129 44 chrX 147471274 147471677 -15128253 + L2 LINE L2 2847 3291 -22 354 301 103 35 chrX 147473231 147473393 -15126537 - L2 LINE L2 -54 3259 3109 243 0 0 0 chrX 147473393 147473420 -15126510 + (TG)n Simple_repeat Simple_repeat 1 27 0 354 301 103 35 chrX 147473420 147473569 -15126361 - L2 LINE L2 -204 3109 2927 838 280 21 25 chrX 147473873 147474112 -15125818 + MIR SINE MIR 15 252 -10 2062 140 90 18 chrX 147474758 147475157 -15124773 - MSTA LTR MaLR 0 428 1 231 356 50 10 chrX 147476030 147476131 -15123799 - L2 LINE L2 0 3272 3168 318 315 138 8 chrX 147477350 147477480 -15122450 + L2 LINE L2 3166 3312 -1 26 50 0 0 chrX 147477675 147477715 -15122215 + AT_rich Low_complexity Low_complexity 1 40 0 1228 214 12 28 chrX 147478428 147478751 -15121179 + L1MB8 LINE L1 5653 5970 -208 10228 184 4 4 chrX 147478843 147481411 -15118519 - L1PA12 LINE L1 -62 6757 3992 523 136 0 0 chrX 147481412 147481500 -15118430 + L1PA15-16 LINE L1 2805 2892 -3957 6236 53 63 1 chrX 147481504 147482313 -15117617 + L1PA6 LINE L1 5281 6139 -15 226 336 29 0 chrX 147482298 147482402 -15117528 + L1MC4 LINE L1 6597 6703 -1339 * 233 282 29 0 chrX 147482331 147482434 -15117496 - L1MC4 LINE L1 -1323 6719 6614 234 0 0 0 chrX 147482434 147482460 -15117470 + (GA)n Simple_repeat Simple_repeat 2 27 0 1726 180 6 10 chrX 147482474 147482878 -15117052 + L1P LINE L1 2191 2596 -3550 * 4256 209 8 34 chrX 147482849 147483702 -15116228 - L1PA12 LINE L1 -5045 1742 912 490 249 11 7 chrX 147483757 147483942 -15115988 + L1MB7 LINE L1 5985 6169 -11 1877 275 92 54 chrX 147484258 147485396 -15114534 - L2 LINE L2 -47 3266 2066 250 238 66 66 chrX 147485734 147485856 -15114074 - MIR SINE MIR -70 192 71 366 269 34 59 chrX 147486314 147486433 -15113497 + L2 LINE L2 3184 3299 -14 453 289 0 89 chrX 147486513 147486703 -15113227 - MER5B DNA MER1_type 0 178 6 256 333 0 0 chrX 147488162 147488234 -15111696 + L3 LINE CR1 63 134 -1443 215 356 79 40 chrX 147488925 147489127 -15110803 + L3b LINE CR1 1103 1312 -271 368 258 21 10 chrX 147489524 147489621 -15110309 - L2 LINE L2 0 3272 3175 180 97 0 0 chrX 147490001 147490032 -15109898 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2089 101 0 17 chrX 147490041 147490328 -15109602 - AluSx SINE Alu -30 282 1 1962 174 26 3 chrX 147491007 147491358 -15108572 - MLT1A1 LTR MaLR -6 359 1 1777 223 38 24 chrX 147491663 147492081 -15107849 - MSTC LTR MaLR -2 426 3 208 268 70 14 chrX 147492539 147492610 -15107320 + MIR SINE MIR 66 140 -122 210 71 0 0 chrX 147492657 147492685 -15107245 + (TA)n Simple_repeat Simple_repeat 2 29 0 202 345 97 9 chrX 147493061 147493174 -15106756 + MIR SINE MIR 72 194 -68 252 172 172 0 chrX 147493183 147493241 -15106689 + L1MC4a LINE L1 7620 7687 -121 26 30 0 0 chrX 147493243 147493276 -15106654 + AT_rich Low_complexity Low_complexity 1 33 0 278 71 24 0 chrX 147493276 147493318 -15106612 - L1PB1 LINE L1 -5 6146 6104 7009 211 7 4 chrX 147493323 147494889 -15105041 - L1 LINE L1 -1095 5051 3481 361 282 36 74 chrX 147494957 147495266 -15104664 + L1MC4 LINE L1 7741 8037 -5 22 0 0 0 chrX 147496007 147496029 -15103901 + AT_rich Low_complexity Low_complexity 1 22 0 433 148 0 12 chrX 147497970 147498051 -15101879 + MLT1J LTR MaLR 1 80 -544 1348 255 33 3 chrX 147498083 147498412 -15101518 + MLT1E2 LTR MaLR 286 624 -2 504 128 13 0 chrX 147498566 147498644 -15101286 - L1MC/D LINE L1 -716 5617 5539 559 326 112 16 chrX 147498644 147498957 -15100973 + MLT1J LTR MaLR 154 496 -15 6549 31 0 0 chrX 147499099 147499872 -15100058 + L1PA4 LINE L1 5382 6154 -1 356 192 200 39 chrX 147500397 147500461 -15099469 - MER112 DNA MER1_type -33 227 175 198 71 0 0 chrX 147500461 147500489 -15099441 + (AATAG)n Simple_repeat Simple_repeat 5 32 0 356 192 200 39 chrX 147500489 147500554 -15099376 - MER112 DNA MER1_type -85 175 77 239 283 53 26 chrX 147500764 147500877 -15099053 + HAL1b LINE L1 1229 1344 -4 216 339 36 18 chrX 147501024 147501136 -15098794 - L2 LINE L2 -223 3049 2936 390 318 30 8 chrX 147502248 147502380 -15097550 - MIR SINE MIR -115 147 13 585 264 7 14 chrX 147503340 147503484 -15096446 - MIR SINE MIR -73 189 47 1985 83 9 98 chrX 147503955 147504282 -15095648 - AluSq SINE Alu -15 298 1 405 284 33 9 chrX 147504500 147504630 -15095300 - MIR SINE MIR -71 137 18 277 304 19 76 chrX 147504978 147505136 -15094794 + L2 LINE L2 2914 3062 -210 433 293 103 52 chrX 147506532 147506764 -15093166 - L2 LINE L2 -56 3257 3014 889 162 180 0 chrX 147506810 147507032 -15092898 + L1P LINE L1 3089 3350 -2796 * 3726 117 35 0 chrX 147507003 147507599 -15092331 + L1P LINE L1 4787 5403 -743 6614 167 21 14 chrX 147607607 147608758 -14991172 + ERVL-B1 LTR ERVL 4598 5756 -8 1655 207 159 5 chrX 147608759 147609175 -14990755 + MLT2B1 LTR ERVL 1 480 -40 464 184 11 11 chrX 147609219 147609398 -14990532 + (TA)n Simple_repeat Simple_repeat 2 180 0 339 236 0 28 chrX 147609423 147609495 -14990435 + MLT1D LTR MaLR 288 357 -148 343 109 42 25 chrX 147609505 147609624 -14990306 + (TA)n Simple_repeat Simple_repeat 1 121 0 200 194 30 15 chrX 147609639 147609706 -14990224 + (TA)n Simple_repeat Simple_repeat 1 68 0 253 56 0 28 chrX 147609742 147609778 -14990152 + MLT2B1 LTR ERVL 486 520 0 2155 114 0 0 chrX 147610233 147610539 -14989391 - AluSg SINE Alu -4 306 1 1107 249 108 55 chrX 147610769 147611206 -14988724 - MLT1D LTR MaLR -45 460 1 430 341 62 35 chrX 147611207 147611497 -14988433 + L1ME LINE L1 104 401 -5669 320 132 0 73 chrX 147611505 147611598 -14988332 + FLAM_A SINE Alu 71 133 0 1571 21 0 16 chrX 147611798 147611990 -14987940 - L1PA4 LINE L1 0 6155 5967 23 33 0 0 chrX 147612062 147612092 -14987838 + AT_rich Low_complexity Low_complexity 1 30 0 712 179 38 98 chrX 147612670 147612959 -14986971 + L1MA7 LINE L1 6032 6293 0 271 317 90 42 chrX 147613104 147614149 -14985781 + L1ME LINE L1 2065 3159 -2921 336 322 108 32 chrX 147614222 147614851 -14985079 + L1ME LINE L1 3258 3952 -2128 642 58 0 0 chrX 147614851 147614938 -14984992 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 336 322 108 32 chrX 147614938 147615025 -14984905 + L1ME LINE L1 3952 4031 -2049 2591 201 26 5 chrX 147615050 147615626 -14984304 - L1MC1 LINE L1 -4 6329 5742 30 45 0 0 chrX 147615713 147615757 -14984173 + AT_rich Low_complexity Low_complexity 1 44 0 1252 160 6 0 chrX 147615759 147615975 -14983955 - L1P1 LINE L1 -387 5768 5551 * 18898 39 3 2 chrX 147615971 147619205 -14980725 - L1PA5 LINE L1 -5 6149 2949 5078 227 24 17 chrX 147619206 147619784 -14980146 - L1MC1 LINE L1 -743 5403 4830 2270 60 0 3 chrX 147619784 147620112 -14979818 + AluY SINE Alu 1 327 0 5078 227 24 17 chrX 147620112 147621149 -14978781 - L1MC1 LINE L1 -1316 4830 3930 532 292 73 46 chrX 147621366 147621585 -14978345 - MIR SINE MIR -19 243 19 487 310 53 14 chrX 147621629 147621858 -14978072 - MIR SINE MIR 0 262 25 741 334 36 15 chrX 147622301 147622633 -14977297 + LTR16B LTR ERVL 112 450 -14 1584 282 43 23 chrX 147622647 147623336 -14976594 + L1ME2 LINE L1 3621 4323 -1823 2130 246 101 23 chrX 147623337 147624880 -14975050 + L1ME2 LINE L1 4507 6164 0 31 26 0 0 chrX 147625322 147625360 -14974570 + AT_rich Low_complexity Low_complexity 1 38 0 182 237 26 0 chrX 147626313 147626351 -14973579 - L2 LINE L2 -9 3263 3225 209 194 0 0 chrX 147626434 147626470 -14973460 + (CA)n Simple_repeat Simple_repeat 2 37 0 609 324 11 6 chrX 147626521 147626703 -14973227 - L3 LINE CR1 -105 1472 1290 269 318 70 8 chrX 147626952 147627081 -14972849 - MIR SINE MIR -6 256 120 831 196 58 0 chrX 147627321 147627494 -14972436 - L1 LINE L1 -944 5202 5020 709 182 25 0 chrX 147627494 147627615 -14972315 + FLAM_C SINE Alu 1 124 -19 1271 193 11 15 chrX 147627644 147627909 -14972021 - L1 LINE L1 -1118 5028 4765 985 183 37 12 chrX 147627920 147628161 -14971769 - L1MA4A LINE L1 0 6303 6057 632 226 13 0 chrX 147628208 147628363 -14971567 - L1 LINE L1 -3612 2534 2378 * 9054 132 24 6 chrX 147628353 147630408 -14969522 - L1PBa LINE L1 -3935 2927 634 1162 135 5 0 chrX 147630411 147630603 -14969327 - L1PBa LINE L1 -6668 195 3 323 93 0 0 chrX 147630606 147630649 -14969281 + MSTA LTR MaLR 386 428 0 2230 173 2 15 chrX 147630649 147631048 -14968882 + MSTA-int LTR MaLR 1 394 -1257 822 176 0 0 chrX 147631125 147631284 -14968646 - L1MB1 LINE L1 0 6168 6010 2376 78 3 0 chrX 147631446 147631754 -14968176 + AluSc SINE Alu 1 309 0 1623 181 3 3 chrX 147632217 147632504 -14967426 - AluJb SINE Alu -19 293 7 2037 143 48 28 chrX 147632852 147633209 -14966721 - THE1B LTR MaLR 0 364 1 7868 111 4 5 chrX 147633209 147634320 -14965610 - THE1B-int LTR MaLR 0 1580 471 320 71 0 0 chrX 147634332 147634374 -14965556 - THE1B LTR MaLR -320 44 3 2177 110 0 10 chrX 147634886 147635196 -14964734 - AluSg SINE Alu -3 307 1 22 35 0 0 chrX 147635495 147635524 -14964406 + AT_rich Low_complexity Low_complexity 1 29 0 552 294 6 24 chrX 147636006 147636176 -14963754 - MER5B DNA MER1_type -4 174 8 531 355 47 4 chrX 147636261 147636495 -14963435 + MIR SINE MIR 11 254 -8 22 35 0 0 chrX 147636577 147636606 -14963324 + AT_rich Low_complexity Low_complexity 1 29 0 5504 183 19 16 chrX 147637034 147637657 -14962273 + L1PA16 LINE L1 4056 4675 -1491 180 0 0 0 chrX 147637657 147637677 -14962253 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 5504 183 19 16 chrX 147637677 147639168 -14960762 + L1PA16 LINE L1 4675 6165 -1 2781 13 0 0 chrX 147639244 147639555 -14960375 - AluYa5 SINE Alu 0 311 1 4377 217 57 78 chrX 147639576 147641127 -14958803 - L1MC4a LINE L1 0 7808 6291 195 400 50 0 chrX 147641285 147641385 -14958545 - L3 LINE CR1 -151 1426 1322 318 183 0 0 chrX 147642842 147642913 -14957017 + (TA)n Simple_repeat Simple_repeat 1 71 0 2535 215 36 23 chrX 147643097 147643778 -14956152 - L1MA9 LINE L1 -450 5862 5170 1813 178 33 25 chrX 147643780 147644178 -14955752 + L1MA9 LINE L1 5873 6273 -39 273 260 153 0 chrX 147644682 147644832 -14955098 + L1ME LINE L1 5660 5832 -289 1004 362 44 12 chrX 147644842 147645431 -14954499 + L1PA13 LINE L1 1 608 -6179 381 372 6 6 chrX 147645737 147645893 -14954037 + L2 LINE L2 2875 3030 -242 2375 55 0 0 chrX 147645893 147646185 -14953745 - AluY SINE Alu -19 292 1 9919 204 61 14 chrX 147646193 147648482 -14951448 - L1P LINE L1 -1510 4636 2242 1650 217 110 9 chrX 147648480 147648945 -14950985 - L1M4 LINE L1 -780 5366 4855 * 250 207 35 0 chrX 147650610 147650668 -14949262 + GA-rich Low_complexity Low_complexity 3 62 0 227 318 0 45 chrX 147651306 147651394 -14948536 - L2 LINE L2 -5 3308 3225 802 261 46 0 chrX 147651701 147651896 -14948034 + MIR SINE MIR 1 204 -58 204 179 0 0 chrX 147651898 147651937 -14947993 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 306 322 0 0 chrX 147651937 147652027 -14947903 + L1MC4 LINE L1 6614 6703 -1339 309 238 0 0 chrX 147652035 147652115 -14947815 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 1580 182 7 28 chrX 147652115 147652406 -14947524 - AluSx SINE Alu -27 285 1 299 255 88 20 chrX 147653224 147653326 -14946604 + MIR SINE MIR 81 189 -73 519 270 184 0 chrX 147653530 147653715 -14946215 - MLT1F1 LTR MaLR 0 567 349 22 0 0 0 chrX 147654181 147654203 -14945727 + AT_rich Low_complexity Low_complexity 1 22 0 852 298 97 0 chrX 147654623 147654851 -14945079 - MIR SINE MIR 0 262 13 288 298 53 11 chrX 147654923 147655017 -14944913 + MIR SINE MIR 40 137 -125 443 33 33 0 chrX 147655108 147655168 -14944762 + (TTATG)n Simple_repeat Simple_repeat 1 62 0 198 304 114 63 chrX 147655298 147655456 -14944474 - MIR SINE MIR -31 231 66 1943 46 4 19 chrX 147655488 147655748 -14944182 + L1PA4 LINE L1 5896 6151 -4 304 38 57 19 chrX 147655970 147656023 -14943907 + T-rich Low_complexity Low_complexity 1 55 0 3931 36 2 0 chrX 147656023 147656495 -14943435 - L1PA3 LINE L1 -24 6131 5659 218 204 0 0 chrX 147656522 147656566 -14943364 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 337 276 31 0 chrX 147656723 147656821 -14943109 + MIR SINE MIR 146 246 -16 1522 218 25 44 chrX 147658625 147659033 -14940897 - MLT1D LTR MaLR 0 505 106 452 259 116 26 chrX 147659955 147660187 -14939743 - MIR SINE MIR -6 256 4 444 286 26 88 chrX 147660258 147660485 -14939445 + MIR SINE MIR 1 213 -49 27 87 0 0 chrX 147661998 147662067 -14937863 + AT_rich Low_complexity Low_complexity 1 69 0 2551 40 0 0 chrX 147662071 147662368 -14937562 + AluY SINE Alu 1 297 -14 317 234 19 95 chrX 147662670 147662828 -14937102 - L1MC/D LINE L1 -1961 5847 5702 2344 84 0 3 chrX 147662862 147663172 -14936758 - AluY SINE Alu -2 309 1 344 335 97 55 chrX 147663181 147663283 -14936647 - L1MC/D LINE L1 -476 5645 5549 2453 153 50 2 chrX 147663283 147663747 -14936183 - LTR19A LTR ERV1 0 486 1 344 335 97 55 chrX 147663747 147663901 -14936029 - L1MC/D LINE L1 -572 5549 5378 652 213 7 39 chrX 147664349 147664504 -14935426 - MLT1E2 LTR MaLR -2 624 475 363 121 0 0 chrX 147664833 147664891 -14935039 + (TC)n Simple_repeat Simple_repeat 1 58 0 339 191 0 0 chrX 147664890 147664958 -14934972 + (CA)n Simple_repeat Simple_repeat 1 68 0 * 989 267 78 51 chrX 147665002 147665591 -14934339 - HAL1 LINE L1 -121 2386 1782 6574 159 14 7 chrX 147665607 147667120 -14932810 - L1MA1 LINE L1 0 7721 6197 852 119 8 0 chrX 147667102 147667236 -14932694 - L1MA1 LINE L1 -4974 2591 2457 * 26 50 0 0 chrX 147669499 147669539 -14930391 + AT_rich Low_complexity Low_complexity 1 40 0 1817 144 22 0 chrX 147669543 147669820 -14930110 + AluSc SINE Alu 1 283 -26 405 271 0 0 chrX 147669820 147669942 -14929988 + (TA)n Simple_repeat Simple_repeat 1 122 0 228 281 0 62 chrX 147669949 147670045 -14929885 - L1MC4 LINE L1 -1339 6703 6614 240 315 0 0 chrX 147670053 147670142 -14929788 - L1MC4 LINE L1 -1339 6703 6615 261 274 0 0 chrX 147670144 147670228 -14929702 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 * 486 239 0 33 chrX 147670223 147670403 -14929527 + (CATA)n Simple_repeat Simple_repeat 2 175 0 352 235 7 77 chrX 147670405 147670548 -14929382 + L1MC4 LINE L1 2006 6983 -1339 282 258 0 0 chrX 147670593 147670682 -14929248 + GA-rich Low_complexity Low_complexity 2 90 0 282 313 12 0 chrX 147671167 147671247 -14928683 - L2 LINE L2 0 3313 3233 29 0 0 0 chrX 147671680 147671709 -14928221 + AT_rich Low_complexity Low_complexity 1 29 0 2557 121 8 74 chrX 147671715 147672228 -14927702 - L1MA1 LINE L1 -33 6269 5791 * 9638 191 42 6 chrX 147672225 147673999 -14925931 - L1M1 LINE L1 -5406 2159 321 4192 102 2 5 chrX 147674008 147674576 -14925354 + LTR9B LTR ERV1 1 566 -78 1417 163 13 77 chrX 147674595 147674908 -14925022 - L1M1 LINE L1 -7253 312 20 519 297 92 56 chrX 147675357 147676179 -14923751 + L1ME LINE L1 3587 4438 -1708 22 0 0 0 chrX 147676386 147676408 -14923522 + AT_rich Low_complexity Low_complexity 1 22 0 5904 111 26 3 chrX 147676498 147677526 -14922404 + L1PB1 LINE L1 5100 6145 -6 38 22 0 0 chrX 147677527 147677572 -14922358 + AT_rich Low_complexity Low_complexity 1 45 0 465 349 70 29 chrX 147677656 147677897 -14922033 + MIR SINE MIR 11 261 -1 651 309 40 22 chrX 147678087 147678466 -14921464 + L1ME LINE L1 5093 5485 -679 2134 84 0 78 chrX 147678466 147678599 -14921331 + AluSc SINE Alu 1 143 -166 2870 10 0 0 chrX 147678599 147678910 -14921020 + AluY SINE Alu 1 311 0 2134 84 0 78 chrX 147678910 147679096 -14920834 + AluSc SINE Alu 143 295 -14 651 309 40 22 chrX 147679096 147679283 -14920647 + L1ME LINE L1 5485 5667 -497 1742 184 16 52 chrX 147679306 147679687 -14920243 + MLT1B LTR MaLR 3 369 -21 22 0 0 0 chrX 147679793 147679815 -14920115 + AT_rich Low_complexity Low_complexity 1 22 0 821 236 70 21 chrX 147679834 147680075 -14919855 + MIR SINE MIR 9 261 -1 197 222 0 0 chrX 147681747 147681783 -14918147 + L2 LINE L2 2941 2976 -296 352 318 77 36 chrX 147681960 147682155 -14917775 - MIR SINE MIR -12 250 48 25 51 0 0 chrX 147683657 147683696 -14916234 + AT_rich Low_complexity Low_complexity 1 39 0 287 295 13 0 chrX 147684270 147684348 -14915582 + L2 LINE L2 3235 3313 0 233 319 81 27 chrX 147684520 147684705 -14915225 + L2 LINE L2 3118 3312 -1 207 370 52 19 chrX 147685329 147685483 -14914447 - L2 LINE L2 -217 3055 2897 252 368 69 32 chrX 147685522 147685769 -14914161 - L2 LINE L2 -505 2809 2554 312 390 5 15 chrX 147686346 147686541 -14913389 - L2 LINE L2 -624 2690 2498 6035 187 30 23 chrX 147686610 147687563 -14912367 - L1MA7 LINE L1 0 6291 5346 2380 78 7 13 chrX 147687563 147687870 -14912060 - AluSq SINE Alu -8 305 1 6035 187 30 23 chrX 147687870 147689225 -14910705 - L1MA7 LINE L1 -945 5346 3965 268 307 153 15 chrX 147689363 147689500 -14910430 + MIR SINE MIR 18 173 -89 203 272 0 33 chrX 147689611 147689703 -14910227 + GA-rich Low_complexity Low_complexity 3 91 0 260 27 27 0 chrX 147690211 147690248 -14909682 + (GA)n Simple_repeat Simple_repeat 1 38 0 188 354 49 0 chrX 147690809 147690891 -14909039 - L2 LINE L2 -9 3263 3178 200 308 0 0 chrX 147691127 147691205 -14908725 + A-rich Low_complexity Low_complexity 2 79 0 21 0 0 0 chrX 147691417 147691438 -14908492 + AT_rich Low_complexity Low_complexity 1 21 0 505 254 164 65 chrX 147692049 147692107 -14907823 - MIR SINE MIR -3 259 208 2017 139 0 0 chrX 147692107 147692443 -14907487 - AluSg SINE Alu 0 336 1 505 254 164 65 chrX 147692443 147692615 -14907315 - MIR SINE MIR -54 208 5 1931 225 41 0 chrX 147692699 147693086 -14906844 + MSTB LTR MaLR 24 426 0 294 29 0 0 chrX 147693209 147693244 -14906686 + (TG)n Simple_repeat Simple_repeat 1 35 0 3695 161 42 24 chrX 147693766 147694512 -14905418 - LTR1B LTR ERV1 0 785 6 2016 133 4 0 chrX 147694740 147695019 -14904911 + AluSx SINE Alu 2 281 -31 240 35 0 0 chrX 147695024 147695053 -14904877 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1903 133 92 43 chrX 147695107 147695454 -14904476 + THE1B LTR MaLR 1 364 0 11329 101 6 4 chrX 147695454 147697032 -14902898 + THE1B-int LTR MaLR 1 1580 0 1973 116 41 61 chrX 147697032 147697395 -14902535 + THE1B LTR MaLR 1 356 -8 666 294 35 104 chrX 147697406 147697648 -14902282 - LTR16B LTR ERVL -40 424 167 186 43 0 0 chrX 147697648 147697671 -14902259 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1800 96 32 54 chrX 147697681 147697961 -14901969 - AluSg SINE Alu -36 274 1 666 294 35 104 chrX 147697961 147698160 -14901770 - LTR16B LTR ERVL -306 158 3 1201 200 71 63 chrX 147698223 147698588 -14901342 + MLT1A2 LTR MaLR 4 371 -3 5812 141 35 85 chrX 147699046 147700341 -14899589 - Tigger3b DNA MER2_type 0 1231 2 3546 22 0 0 chrX 147700741 147701151 -14898779 + L1PA5 LINE L1 5737 6146 -8 180 0 0 0 chrX 147701315 147701335 -14898595 + (CTA)n Simple_repeat Simple_repeat 1 20 0 282 29 0 0 chrX 147701716 147701751 -14898179 + (TA)n Simple_repeat Simple_repeat 2 36 0 271 340 27 7 chrX 147701771 147701918 -14898012 - L2 LINE L2 -56 3257 3108 289 281 140 9 chrX 147702020 147702134 -14897796 - L2 LINE L2 0 3313 3185 23 0 0 0 chrX 147702287 147702310 -14897620 + AT_rich Low_complexity Low_complexity 1 23 0 183 279 93 0 chrX 147702760 147702803 -14897127 - L2 LINE L2 -21 3251 3205 820 178 47 18 chrX 147702838 147703007 -14896923 - L1PA16 LINE L1 -2 6164 5991 21 0 0 0 chrX 147703071 147703092 -14896838 + AT_rich Low_complexity Low_complexity 1 21 0 1013 148 0 0 chrX 147703093 147703255 -14896675 - L1PA16 LINE L1 -193 5973 5812 939 191 16 6 chrX 147703579 147703829 -14896101 - L1MA8 LINE L1 0 6168 6038 1812 252 23 40 chrX 147704246 147704542 -14895388 - LTR40a LTR ERVL 0 519 234 1850 174 30 33 chrX 147704542 147704903 -14895027 + THE1B LTR MaLR 3 362 -2 1812 252 23 40 chrX 147704903 147705134 -14894796 - LTR40a LTR ERVL -285 234 1 1285 145 21 13 chrX 147705291 147705525 -14894405 - MER46A DNA MER2_type 0 236 1 17393 184 18 17 chrX 147705572 147708790 -14891140 + ERVL LTR ERVL 2114 5333 -431 6762 57 11 8 chrX 147708790 147710570 -14889360 + L1PA7 LINE L1 4376 6154 0 1254 256 95 17 chrX 147710623 147711033 -14888897 + MLT2B1 LTR ERVL 1 442 -78 264 186 70 47 chrX 147711040 147711126 -14888804 + L1MC4 LINE L1 6619 6706 -1336 387 194 0 0 chrX 147711128 147711236 -14888694 + (TA)n Simple_repeat Simple_repeat 1 108 0 684 97 0 0 chrX 147711242 147711335 -14888595 - L1PA8 LINE L1 -304 5868 5776 295 145 24 0 chrX 147711363 147711446 -14888484 + (TA)n Simple_repeat Simple_repeat 2 86 0 247 94 0 0 chrX 147711469 147711501 -14888429 + MLT2B1 LTR ERVL 487 518 -2 3807 181 11 12 chrX 147712502 147713224 -14886706 + L1PA16 LINE L1 5446 6166 0 375 293 9 17 chrX 147713490 147713606 -14886324 + MIR SINE MIR 147 261 -1 * 399 311 12 37 chrX 147713589 147713750 -14886180 - MIR SINE MIR -94 168 12 624 284 23 6 chrX 147713887 147714063 -14885867 - MIR SINE MIR -71 191 13 441 0 0 0 chrX 147714234 147714283 -14885647 + (CA)n Simple_repeat Simple_repeat 1 49 0 213 213 0 21 chrX 147714463 147714510 -14885420 + CT-rich Low_complexity Low_complexity 1 46 0 222 220 0 0 chrX 147714510 147714569 -14885361 + (TA)n Simple_repeat Simple_repeat 1 59 0 224 211 35 0 chrX 147714714 147714771 -14885159 + (TA)n Simple_repeat Simple_repeat 1 59 0 318 279 47 0 chrX 147714772 147714858 -14885072 - L1MC4 LINE L1 -1339 6703 6614 326 284 23 0 chrX 147714870 147714958 -14884972 - L1MC4 LINE L1 -1339 6703 6614 659 173 15 0 chrX 147714960 147715093 -14884837 + (CATA)n Simple_repeat Simple_repeat 4 138 0 319 315 0 0 chrX 147715094 147715183 -14884747 - L1MC4 LINE L1 -1339 6703 6615 265 296 23 0 chrX 147715194 147715282 -14884648 - L1MC4 LINE L1 -1339 6703 6614 213 175 0 0 chrX 147715291 147715331 -14884599 + (TA)n Simple_repeat Simple_repeat 1 40 0 245 151 41 55 chrX 147715332 147715405 -14884525 + LTR66 LTR ERVL 394 465 -145 23 0 0 0 chrX 147716179 147716202 -14883728 + AT_rich Low_complexity Low_complexity 1 23 0 481 100 0 25 chrX 147716361 147716441 -14883489 - Alu SINE Alu -7 305 228 431 309 20 26 chrX 147716447 147716599 -14883331 + Charlie2 DNA MER1_type 1 151 -2631 446 33 0 16 chrX 147716641 147716702 -14883228 + (TTTTA)n Simple_repeat Simple_repeat 1 60 0 851 95 24 14 chrX 147716702 147716831 -14883099 - L1PA3 LINE L1 -17 6144 6016 230 250 0 31 chrX 147716838 147716902 -14883028 + Charlie2 DNA MER1_type 240 301 -2481 1247 233 109 61 chrX 147716928 147717847 -14882083 + Charlie2 DNA MER1_type 1855 2817 -45 4634 30 11 0 chrX 147717847 147718488 -14881442 - L1PA4 LINE L1 -682 5473 4829 5751 26 0 10 chrX 147718488 147719171 -14880759 + L1PA4 LINE L1 5472 6152 -3 181 234 43 0 chrX 147719466 147719513 -14880417 - MIR3 SINE MIR -48 160 112 581 276 179 31 chrX 147720577 147720929 -14879001 + L2 LINE L2 2824 3227 -86 27 29 0 0 chrX 147720963 147720997 -14878933 + AT_rich Low_complexity Low_complexity 1 34 0 387 73 0 0 chrX 147721677 147721732 -14878198 + (TG)n Simple_repeat Simple_repeat 2 56 0 584 167 9 18 chrX 147721852 147721966 -14877964 - L1P LINE L1 -2027 4119 4007 22 0 0 0 chrX 147722455 147722477 -14877453 + AT_rich Low_complexity Low_complexity 1 22 0 353 280 47 9 chrX 147722653 147722760 -14877170 + L2 LINE L2 3202 3312 -1 2100 116 0 41 chrX 147722954 147723272 -14876658 - AluSc SINE Alu -4 305 1 890 252 23 19 chrX 147723286 147723500 -14876430 - MLT1E LTR MaLR -374 219 5 471 347 42 15 chrX 147723512 147723774 -14876156 - L2 LINE L2 -877 2437 2169 212 322 0 0 chrX 147723841 147723900 -14876030 - L2 LINE L2 -4 3309 3251 7439 30 4 4 chrX 147724459 147725905 -14874025 + L1PA4 LINE L1 4710 6155 0 217 208 0 57 chrX 147725906 147725959 -14873971 + GA-rich Low_complexity Low_complexity 2 51 0 27 0 0 0 chrX 147727137 147727164 -14872766 + AT_rich Low_complexity Low_complexity 1 27 0 305 80 80 0 chrX 147727858 147727908 -14872022 - MLT2A2 LTR ERVL 0 453 400 432 0 0 0 chrX 147727913 147727961 -14871969 + (TA)n Simple_repeat Simple_repeat 1 48 0 2038 174 34 24 chrX 147728023 147728510 -14871420 - MLT2A2 LTR ERVL -53 501 1 198 288 91 0 chrX 147728519 147728585 -14871345 + MIR SINE MIR 112 183 -79 255 288 88 0 chrX 147729645 147729725 -14870205 - MIR SINE MIR -108 154 68 752 266 10 5 chrX 147729729 147729921 -14870009 - MLT1H1 LTR MaLR 0 555 363 1234 63 121 0 chrX 147729922 147730096 -14869834 + MER30 DNA MER1_type 1 195 -35 988 250 13 26 chrX 147730111 147730339 -14869591 - MLT1H1 LTR MaLR -184 371 147 2038 128 0 84 chrX 147730343 147730711 -14869219 - MER1B DNA MER1_type 0 337 1 200 200 175 75 chrX 147731039 147731119 -14868811 + L2 LINE L2 3226 3313 0 303 122 0 0 chrX 147732349 147732398 -14867532 + (CA)n Simple_repeat Simple_repeat 2 50 0 1476 176 147 0 chrX 147732400 147732713 -14867217 - MER46B DNA MER2_type -2 234 1 4710 154 20 39 chrX 147732717 147733593 -14866337 + Tigger1 DNA MER2_type 1 860 -1558 22824 25 3 0 chrX 147733593 147736329 -14863601 - L1PA3 LINE L1 -1142 5004 2262 7496 28 0 11 chrX 147736329 147737471 -14862459 + L1PA3 LINE L1 5021 6152 -3 8944 144 34 16 chrX 147737503 147737646 -14862284 + Tigger1 DNA MER2_type 842 981 -1437 2159 118 0 16 chrX 147737646 147737992 -14861938 + AluSp SINE Alu 1 313 0 8944 144 34 16 chrX 147737992 147739200 -14860730 + Tigger1 DNA MER2_type 981 2226 -192 2047 131 0 13 chrX 147739200 147739506 -14860424 - AluSq SINE Alu -11 302 1 8944 144 34 16 chrX 147739506 147739703 -14860227 + Tigger1 DNA MER2_type 2226 2418 0 201 254 0 0 chrX 147739707 147739762 -14860168 + (TATG)n Simple_repeat Simple_repeat 2 56 0 207 326 0 0 chrX 147739762 147739811 -14860119 + (CA)n Simple_repeat Simple_repeat 2 50 0 696 97 19 0 chrX 147739814 147739917 -14860013 + Tigger1 DNA MER2_type 687 791 -1627 228 326 0 0 chrX 147739936 147740025 -14859905 - L1MC4 LINE L1 -1339 6703 6615 * 236 279 47 0 chrX 147739980 147740066 -14859864 + L1MC4 LINE L1 6614 6703 -1339 * 297 192 0 101 chrX 147740038 147740137 -14859793 - L1MC4 LINE L1 -1339 6703 6615 29 0 0 0 chrX 147740736 147740765 -14859165 + AT_rich Low_complexity Low_complexity 1 29 0 280 299 78 29 chrX 147740958 147741202 -14858728 - L1ME4a LINE L1 -226 5895 5640 2843 87 77 5 chrX 147741654 147742028 -14857902 + MLT2A1 LTR ERVL 1 409 -35 546 16 0 0 chrX 147742028 147742091 -14857839 + (TA)n Simple_repeat Simple_repeat 1 63 0 2843 87 77 5 chrX 147742091 147742130 -14857800 + MLT2A1 LTR ERVL 409 444 0 43417 78 7 6 chrX 147742131 147747780 -14852150 + HERVL-A1 LTR ERVL 2 5654 0 2772 84 36 5 chrX 147747780 147748172 -14851758 + MLT2A1 LTR ERVL 1 404 -40 289 217 0 22 chrX 147748184 147748276 -14851654 - L1MC4 LINE L1 -1339 6703 6614 485 239 0 8 chrX 147748276 147748410 -14851520 + (TA)n Simple_repeat Simple_repeat 1 133 0 402 74 0 0 chrX 147748410 147748464 -14851466 + MLT2A1 LTR ERVL 391 444 0 296 314 128 6 chrX 147748760 147748916 -14851014 - MIR SINE MIR -22 240 66 234 0 0 0 chrX 147749556 147749582 -14850348 + (T)n Simple_repeat Simple_repeat 1 26 0 2547 38 0 0 chrX 147749786 147750077 -14849853 - AluY SINE Alu -20 291 1 522 286 43 6 chrX 147750078 147750239 -14849691 - MIR SINE MIR -71 191 25 33 0 0 0 chrX 147750736 147750769 -14849161 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chrX 147751237 147751257 -14848673 + (GA)n Simple_repeat Simple_repeat 2 21 0 225 378 22 22 chrX 147751396 147751531 -14848399 + HAL1 LINE L1 510 644 -1863 246 325 36 0 chrX 147751537 147751620 -14848310 + MIR3 SINE MIR 82 167 -41 4671 153 20 15 chrX 147751737 147752920 -14847010 + L1MA4A LINE L1 4934 6122 -181 406 252 0 0 chrX 147752924 147753039 -14846891 + L1MA4A LINE L1 6189 6303 0 2240 76 4 4 chrX 147753571 147753848 -14846082 - AluSp SINE Alu -36 277 1 305 275 111 58 chrX 147754335 147754542 -14845388 - MIR SINE MIR -25 237 20 180 393 12 0 chrX 147754633 147754717 -14845213 - L3 LINE CR1 -363 1214 1130 467 190 7 99 chrX 147756168 147756310 -14843620 + MIR3 SINE MIR 73 201 -7 1233 148 100 32 chrX 147756606 147756856 -14843074 + L1MA6 LINE L1 6034 6300 0 203 389 18 26 chrX 147757001 147757227 -14842703 - L2 LINE L2 -654 2660 2437 246 62 0 0 chrX 147757367 147757399 -14842531 + (A)n Simple_repeat Simple_repeat 1 32 0 1362 250 7 10 chrX 147757651 147757959 -14841971 + Tigger5 DNA MER2_type 1 307 -2016 1496 115 0 0 chrX 147757966 147758175 -14841755 + Tigger5 DNA MER2_type 2114 2322 -1 1835 128 170 25 chrX 147758265 147758618 -14841312 - MER4A LTR ERV1 0 664 261 477 155 31 21 chrX 147758618 147758715 -14841215 - MER4A LTR ERV1 -566 98 1 29 78 0 0 chrX 147759150 147759214 -14840716 + AT_rich Low_complexity Low_complexity 1 64 0 839 19 19 0 chrX 147759270 147759373 -14840557 - L1PA4 LINE L1 -3 6152 6048 223 177 32 0 chrX 147760777 147760839 -14839091 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 330 393 0 7 chrX 147760890 147761035 -14838895 + L2 LINE L2 2615 2758 -556 194 370 55 24 chrX 147761117 147761244 -14838686 + L2 LINE L2 2905 3035 -237 214 336 128 38 chrX 147761619 147761830 -14838100 + MIR SINE MIR 1 230 -32 299 289 73 55 chrX 147761857 147762405 -14837525 - L1MEd LINE L1 -938 1552 895 254 263 60 8 chrX 147762448 147762581 -14837349 - L1MEd LINE L1 -5221 898 759 2101 191 31 7 chrX 147762895 147763309 -14836621 - MSTB LTR MaLR -2 424 1 324 0 0 0 chrX 147765357 147765393 -14834537 + (TA)n Simple_repeat Simple_repeat 2 37 0 661 271 53 24 chrX 147765406 147765653 -14834277 + MIR SINE MIR 9 262 0 28 61 0 0 chrX 147765666 147765715 -14834215 + AT_rich Low_complexity Low_complexity 1 49 0 1328 96 5 67 chrX 147766060 147766268 -14833662 + AluY SINE Alu 105 299 -12 946 218 27 0 chrX 147767461 147767649 -14832281 + L1MDa LINE L1 18 210 -6330 732 176 26 4 chrX 147767651 147767907 -14832023 + CT-rich Low_complexity Low_complexity 1 261 0 1059 234 39 39 chrX 147767916 147768202 -14831728 + L1MDa LINE L1 203 488 -6052 849 262 33 65 chrX 147768231 147768514 -14831416 + L1MDa LINE L1 775 1047 -5493 1670 201 42 28 chrX 147768514 147768872 -14831058 + MLT1A1 LTR MaLR 3 365 0 849 262 33 65 chrX 147768872 147768924 -14831006 + L1MDa LINE L1 1047 1099 -5441 748 288 14 23 chrX 147769383 147769598 -14830332 + MER58A DNA MER1_type 12 224 0 983 285 69 23 chrX 147769793 147770724 -14829206 + L1MCc LINE L1 1024 2090 -4853 1938 144 43 27 chrX 147770724 147771093 -14828837 + THE1C LTR MaLR 1 375 0 983 285 69 23 chrX 147771093 147771267 -14828663 + L1MCc LINE L1 2090 2255 -4688 992 267 139 31 chrX 147771289 147771908 -14828022 + L1M4 LINE L1 4166 4851 -1295 397 337 83 0 chrX 147772104 147772273 -14827657 + MIR SINE MIR 54 236 -26 666 225 32 69 chrX 147772305 147772523 -14827407 - LTR16A1 LTR ERVL -1 456 247 418 266 58 29 chrX 147772572 147772711 -14827219 - LTR16A1 LTR ERVL -312 145 3 2597 34 0 0 chrX 147772780 147773076 -14826854 + AluY SINE Alu 12 307 -4 226 238 16 0 chrX 147773824 147773887 -14826043 - MER53 DNA DNA 0 189 126 323 272 149 31 chrX 147773988 147774183 -14825747 + MLT1J LTR MaLR 260 477 -34 208 35 0 0 chrX 147774212 147774241 -14825689 + L2 LINE L2 3285 3313 0 1618 209 29 34 chrX 147774775 147775157 -14824773 + L1M1 LINE L1 15 394 -7171 13972 185 19 19 chrX 147775166 147778953 -14820977 - L1PA11 LINE L1 0 6174 2377 9413 95 14 8 chrX 147778949 147781104 -14818826 - L1PA7 LINE L1 -3 6151 3991 * 2595 290 48 10 chrX 147781147 147782744 -14817186 - L1M4 LINE L1 -4535 1430 1 699 337 22 17 chrX 147782944 147783300 -14816630 + L2 LINE L2 1862 2219 -1095 218 318 159 9 chrX 147783295 147783402 -14816528 - L2 LINE L2 -252 3020 2898 * 649 324 80 0 chrX 147783416 147783654 -14816276 - MIR SINE MIR 0 262 6 263 254 42 59 chrX 147783760 147783878 -14816052 + L2 LINE L2 2948 3063 -209 315 358 49 0 chrX 147784067 147784190 -14815740 + L2 LINE L2 3184 3312 -1 320 326 61 0 chrX 147784233 147784380 -14815550 - MIR SINE MIR -15 247 92 1405 204 7 48 chrX 147784837 147785154 -14814776 - AluJo SINE Alu 0 305 1 2336 128 6 19 chrX 147785819 147786185 -14813745 - THE1B LTR MaLR -3 361 1 9963 105 48 38 chrX 147786185 147787750 -14812180 - THE1B-int LTR MaLR 0 1580 1 2567 124 0 0 chrX 147787767 147788123 -14811807 - THE1B LTR MaLR -8 356 1 363 306 24 24 chrX 147788990 147789114 -14810816 + MER5A DNA MER1_type 65 188 -1 214 301 167 6 chrX 147789476 147789632 -14810298 - L2 LINE L2 -556 2758 2578 22 35 0 0 chrX 147790498 147790527 -14809403 + AT_rich Low_complexity Low_complexity 1 29 0 390 338 186 9 chrX 147790836 147791170 -14808760 + L2 LINE L2 2920 3312 -1 244 338 169 26 chrX 147791182 147791413 -14808517 + L2 LINE L2 2590 2853 -461 30 27 0 0 chrX 147792222 147792259 -14807671 + AT_rich Low_complexity Low_complexity 1 37 0 1384 232 34 57 chrX 147792633 147793016 -14806914 - MLT1B LTR MaLR -16 374 1 914 227 14 0 chrX 147794274 147794481 -14805449 + L1MA10 LINE L1 4406 4615 -1531 323 227 92 55 chrX 147794479 147794642 -14805288 + L1MB3 LINE L1 3172 3340 -4225 * 9455 191 24 15 chrX 147794641 147796749 -14803181 + L1MB3 LINE L1 4063 6190 -1375 6047 117 102 149 chrX 147796764 147798393 -14801537 - pTR5 LTR ERV1 -143 2295 743 3720 196 32 26 chrX 147798394 147798602 -14801328 + L1MB3 LINE L1 6190 6395 -1207 243 61 0 0 chrX 147798602 147798635 -14801295 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 3720 196 32 26 chrX 147798635 147799311 -14800619 + L1MB3 LINE L1 6395 7157 -445 11123 84 6 0 chrX 147799311 147801608 -14798322 + L1PA7 LINE L1 3833 6140 -14 3720 196 32 26 chrX 147801608 147802055 -14797875 + L1MB3 LINE L1 7157 7600 -2 3762 204 25 4 chrX 147802063 147802742 -14797188 + L1MA10 LINE L1 5477 6179 -155 219 69 0 0 chrX 147802742 147802771 -14797159 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3762 204 25 4 chrX 147802771 147802931 -14796999 + L1MA10 LINE L1 6179 6334 0 183 311 30 111 chrX 147803479 147803614 -14796316 - MIR SINE MIR -65 143 20 21 0 0 0 chrX 147804541 147804562 -14795368 + AT_rich Low_complexity Low_complexity 1 21 0 641 131 0 0 chrX 147804909 147805008 -14794922 + L1MB1 LINE L1 5892 5990 -178 297 68 0 0 chrX 147805082 147805126 -14794804 + (TA)n Simple_repeat Simple_repeat 2 45 0 2274 71 0 30 chrX 147805126 147805423 -14794507 - AluY SINE Alu -23 288 1 1974 283 41 104 chrX 147805570 147806337 -14793593 + L2 LINE L2 1261 1894 -1420 1849 107 9 101 chrX 147806337 147806675 -14793255 - AluSx SINE Alu -1 311 5 1974 283 41 104 chrX 147806675 147807361 -14792569 + L2 LINE L2 1894 2622 -692 2038 227 37 96 chrX 147807375 147807815 -14792115 + MER76 LTR ERV 1 382 -306 378 108 0 0 chrX 147807815 147807880 -14792050 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2038 227 37 96 chrX 147807880 147808170 -14791760 + MER76 LTR ERV 382 688 0 2290 251 69 30 chrX 147808172 147809616 -14790314 + L1MD2 LINE L1 4645 6132 -227 31 0 0 0 chrX 147809631 147809662 -14790268 + AT_rich Low_complexity Low_complexity 1 31 0 308 377 33 0 chrX 147810206 147810328 -14789602 - L2 LINE L2 -4 3268 3143 337 331 16 24 chrX 147810782 147810909 -14789021 - L2 LINE L2 -5 3267 3142 254 290 106 92 chrX 147811033 147811171 -14788759 + L2 LINE L2 1945 2080 -1234 3242 123 2 0 chrX 147811171 147811666 -14788264 - L1PA13 LINE L1 -5 6158 5663 254 290 106 92 chrX 147811666 147811875 -14788055 + L2 LINE L2 2080 2297 -1017 307 296 9 65 chrX 147811898 147812006 -14787924 - L2 LINE L2 0 3272 3171 727 271 35 22 chrX 147812078 147812307 -14787623 - MIR SINE MIR 0 262 31 634 291 6 0 chrX 147812341 147812506 -14787424 + LTR22 LTR ERVK 344 509 0 207 0 0 0 chrX 147812574 147812597 -14787333 + (T)n Simple_repeat Simple_repeat 1 23 0 313 382 34 26 chrX 147812624 147812857 -14787073 + L2 LINE L2 2804 3038 -234 2562 98 27 3 chrX 147812970 147813336 -14786594 + THE1C LTR MaLR 1 375 0 28 0 0 0 chrX 147813413 147813441 -14786489 + AT_rich Low_complexity Low_complexity 1 28 0 1980 145 0 3 chrX 147813441 147813730 -14786200 - AluSx SINE Alu -22 290 3 202 377 13 82 chrX 147813730 147813889 -14786041 + L2 LINE L2 3096 3243 -29 829 264 52 0 chrX 147815396 147815608 -14784322 + MER58A DNA MER1_type 1 223 -1 296 216 66 108 chrX 147817610 147817777 -14782153 + L2 LINE L2 3153 3312 -1 398 273 42 61 chrX 147817862 147818126 -14781804 + L1ME LINE L1 5388 5646 -524 1003 218 57 13 chrX 147818226 147818455 -14781475 - MIR SINE MIR -6 256 18 1783 298 79 27 chrX 147819624 147820497 -14779433 - L2 LINE L2 -61 3252 2323 415 313 39 1 chrX 147820505 147820719 -14779211 - MLT1G3 LTR MaLR 0 595 356 789 284 33 36 chrX 147820784 147821161 -14778769 - MLT1G3 LTR MaLR -209 386 1 1309 293 44 26 chrX 147821161 147821704 -14778226 - L2 LINE L2 -995 2319 1767 1227 256 111 26 chrX 147821762 147822220 -14777710 - MLT1D LTR MaLR -8 497 1 884 274 22 13 chrX 147822974 147823204 -14776726 - MIR SINE MIR -26 236 5 305 277 7 7 chrX 147823394 147823535 -14776395 + (TTAA)n Simple_repeat Simple_repeat 1 141 0 249 314 88 0 chrX 147823615 147823717 -14776213 - MIR SINE MIR -70 192 82 252 0 0 0 chrX 147823857 147823885 -14776045 + (TG)n Simple_repeat Simple_repeat 2 29 0 251 236 35 121 chrX 147824344 147824518 -14775412 - MLT1J2 LTR MaLR -291 159 1 342 307 27 60 chrX 147824839 147824989 -14774941 - MIR SINE MIR -71 191 47 491 259 50 84 chrX 147825853 147826092 -14773838 - MIR SINE MIR 0 262 32 1146 267 97 51 chrX 147826308 147826874 -14773056 + MLT1E LTR MaLR 1 592 -1 189 333 0 0 chrX 147827293 147827344 -14772586 - L2 LINE L2 -2 3311 3261 238 376 21 28 chrX 147828189 147828330 -14771600 - L2 LINE L2 -14 3258 3119 223 279 47 58 chrX 147828421 147828507 -14771423 - MIR SINE MIR -82 180 96 3262 51 5 0 chrX 147828618 147829029 -14770901 + L1PA7 LINE L1 5742 6154 0 2325 15 0 0 chrX 147829675 147829942 -14769988 - L1PA2 LINE L1 0 6155 5889 1768 188 52 41 chrX 147830194 147830730 -14769200 - MLT2A2 LTR ERVL 0 554 1 359 220 0 51 chrX 147831525 147831592 -14768338 + MIR SINE MIR 66 127 -81 342 0 0 0 chrX 147831592 147831630 -14768300 + (TAA)n Simple_repeat Simple_repeat 1 38 0 359 220 0 51 chrX 147831630 147831672 -14768258 + MIR SINE MIR 127 170 -38 2393 68 0 0 chrX 147831869 147832177 -14767753 + AluY SINE Alu 1 308 -3 258 368 39 7 chrX 147833876 147834031 -14765899 + L2 LINE L2 88 247 -3067 827 278 42 18 chrX 147834077 147834459 -14765471 + L1ME1 LINE L1 4552 4942 -1204 288 0 0 0 chrX 147834472 147834504 -14765426 + (TG)n Simple_repeat Simple_repeat 2 33 0 195 184 0 0 chrX 147834535 147834573 -14765357 + (TA)n Simple_repeat Simple_repeat 1 38 0 365 235 24 72 chrX 147834622 147834670 -14765260 + L1ME1 LINE L1 4981 5030 -1116 2399 75 0 16 chrX 147834670 147834977 -14764953 + AluY SINE Alu 1 302 -9 365 235 24 72 chrX 147834977 147835179 -14764751 + L1ME1 LINE L1 5030 5219 -927 * 1194 258 25 33 chrX 147835164 147835613 -14764317 + L1ME1 LINE L1 5718 6162 -4 182 88 0 29 chrX 147835640 147835674 -14764256 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 26 64 0 0 chrX 147835844 147835891 -14764039 + AT_rich Low_complexity Low_complexity 1 47 0 1461 221 87 6 chrX 147837542 147837908 -14762022 + MSTD LTR MaLR 1 396 0 486 342 65 43 chrX 147838168 147838659 -14761271 - LTR33 LTR ERVL 0 521 20 17710 195 32 11 chrX 147838659 147841810 -14758120 + L1MA2 LINE L1 29 3114 -4609 2225 106 17 0 chrX 147841810 147842112 -14757818 + AluSp SINE Alu 1 307 -6 17710 195 32 11 chrX 147842112 147842990 -14756940 + L1MA2 LINE L1 3114 3973 -3750 2220 118 47 16 chrX 147842990 147843354 -14756576 + THE1C LTR MaLR 1 375 0 17710 195 32 11 chrX 147843354 147843615 -14756315 + L1MA2 LINE L1 3973 4227 -3496 2485 129 36 17 chrX 147843615 147844033 -14755897 + MSTA LTR MaLR 3 428 0 17710 195 32 11 chrX 147844033 147847275 -14752655 + L1MA2 LINE L1 4227 7721 -2 215 296 161 0 chrX 147847468 147847549 -14752381 + L2 LINE L2 3169 3262 -10 256 353 85 13 chrX 147847807 147847960 -14751970 - MIR3 SINE MIR 0 208 45 249 268 165 32 chrX 147847911 147848072 -14751858 + MIR SINE MIR 5 185 -68 * 663 283 101 55 chrX 147848079 147848556 -14751374 + LTR33 LTR ERVL 3 501 -20 189 206 0 0 chrX 147848574 147848608 -14751322 + MIR SINE MIR 208 241 -21 243 204 19 0 chrX 147848628 147848682 -14751248 + (TAG)n Simple_repeat Simple_repeat 1 55 0 318 336 73 69 chrX 147849528 147849802 -14750128 + L3 LINE CR1 233 507 -1070 203 242 81 0 chrX 147849890 147849952 -14749978 + L3 LINE CR1 569 635 -942 529 236 22 28 chrX 147849980 147850162 -14749768 - L1MD2 LINE L1 -16 6343 6163 * 703 217 46 138 chrX 147850160 147850788 -14749142 - L1M4 LINE L1 -1459 4687 4118 2648 146 24 7 chrX 147851791 147852243 -14747687 - LTR46 LTR ERV1 0 460 1 12998 67 1 5 chrX 147852243 147854029 -14745901 - LTR46-int LTR ERV1 0 6985 5206 32727 107 17 12 chrX 147854036 147859084 -14740846 - LTR46-int LTR ERV1 -1914 5071 1 2761 130 36 2 chrX 147859084 147859529 -14740401 - LTR46 LTR ERV1 0 460 1 470 283 40 17 chrX 147860516 147860689 -14739241 + MER97b DNA MER1_type? 1 177 -876 687 110 0 0 chrX 147860689 147860789 -14739141 + AluY SINE Alu 204 303 -8 27 0 0 0 chrX 147861148 147861175 -14738755 + AT_rich Low_complexity Low_complexity 1 27 0 275 271 8 8 chrX 147861219 147861341 -14738589 - L1M4 LINE L1 -1709 4437 4316 897 228 95 35 chrX 147861364 147861794 -14738136 - L1MA9 LINE L1 -25 6266 5811 1157 263 31 8 chrX 147862166 147862554 -14737376 - L1M4 LINE L1 -1194 4952 4556 554 309 180 0 chrX 147862562 147862779 -14737151 + L2 LINE L2 2095 2350 -964 272 322 107 13 chrX 147862841 147862990 -14736940 - MIR SINE MIR -83 179 17 1754 146 28 69 chrX 147863305 147863696 -14736234 + THE1C LTR MaLR 1 375 0 186 384 9 9 chrX 147863948 147864060 -14735870 + L2 LINE L2 2890 3001 -271 590 293 25 64 chrX 147864091 147864405 -14735525 + L2 LINE L2 3008 3309 -4 549 316 84 76 chrX 147864417 147864680 -14735250 - L2 LINE L2 -2 3270 3006 406 232 18 0 chrX 147864798 147864923 -14735007 - MER58 DNA MER1_type -102 239 40 1131 210 22 110 chrX 147865345 147865387 -14734543 + MLT1B LTR MaLR 22 66 -324 2070 140 130 18 chrX 147865387 147865772 -14734158 - MSTA LTR MaLR 0 428 1 1131 210 22 110 chrX 147865772 147866129 -14733801 + MLT1B LTR MaLR 66 386 -4 324 312 76 32 chrX 147867117 147867527 -14732403 - MARNA DNA Mariner -14 572 145 383 368 118 13 chrX 147867707 147868011 -14731919 - L2 LINE L2 -466 2848 2513 2144 78 4 4 chrX 147868906 147869187 -14730743 + AluY SINE Alu 1 281 -30 393 245 0 19 chrX 147869403 147869509 -14730421 + MLT1J1 LTR MaLR 44 147 -299 408 311 30 18 chrX 147869845 147870009 -14729921 - MIR SINE MIR -23 239 74 2783 74 6 0 chrX 147870154 147870507 -14729423 + THE1A LTR MaLR 1 355 0 311 333 32 26 chrX 147870613 147870802 -14729128 + L1MC/D LINE L1 5605 5794 -2014 1692 35 0 0 chrX 147870805 147871007 -14728923 + L1PA4 LINE L1 5950 6151 -4 24 0 0 0 chrX 147871119 147871143 -14728787 + AT_rich Low_complexity Low_complexity 1 24 0 13065 189 33 8 chrX 147871318 147875744 -14724186 - L1MA1 LINE L1 0 7721 3181 605 161 0 40 chrX 147875744 147875868 -14724062 - L1PA11 LINE L1 0 6174 6056 332 340 0 0 chrX 147875875 147875972 -14723958 - L1P3 LINE L1 -5088 787 691 1191 281 72 77 chrX 147876001 147876651 -14723279 - L1P3 LINE L1 -5814 647 1 15630 193 29 17 chrX 147876653 147877348 -14722582 - L1M1 LINE L1 -4389 3176 2491 1904 126 68 0 chrX 147877348 147877626 -14722304 - AluSx SINE Alu -15 297 1 15630 193 29 17 chrX 147877626 147880046 -14719884 - L1M1 LINE L1 -5074 2491 25 534 305 12 6 chrX 147880701 147880865 -14719065 - MARNA DNA Mariner -394 192 28 1074 198 151 73 chrX 147881421 147881845 -14718085 + MSTB2 LTR MaLR 1 457 0 386 175 0 0 chrX 147881916 147881979 -14717951 - MLT1A1 LTR MaLR 0 365 303 293 167 13 0 chrX 147882572 147882650 -14717280 + CT-rich Low_complexity Low_complexity 2 80 0 789 255 28 28 chrX 147882831 147883047 -14716883 + MIR SINE MIR 34 249 -13 373 305 21 21 chrX 147883143 147883284 -14716646 + MIR3 SINE MIR 63 203 -5 22 0 0 0 chrX 147884411 147884433 -14715497 + AT_rich Low_complexity Low_complexity 1 22 0 738 145 8 0 chrX 147884435 147884559 -14715371 + L1MB5 LINE L1 6042 6166 -8 295 345 43 1 chrX 147884924 147885057 -14714873 + MIR3 SINE MIR 48 190 -18 239 333 70 31 chrX 147885384 147885513 -14714417 - MIR SINE MIR -112 150 17 573 329 17 123 chrX 147885544 147885820 -14714110 - L2 LINE L2 -1 3271 3068 2509 54 0 13 chrX 147885820 147886135 -14713795 + AluY SINE Alu 1 311 0 573 329 17 123 chrX 147886135 147886354 -14713576 - L2 LINE L2 -204 3068 2827 1508 267 83 65 chrX 147886466 147888546 -14711384 - L1ME3A LINE L1 -261 5909 3800 18116 204 59 19 chrX 147888552 147893782 -14706148 + L1M1 LINE L1 19 5463 -2102 564 15 0 0 chrX 147893782 147893847 -14706083 + (GA)n Simple_repeat Simple_repeat 1 65 0 310 271 68 13 chrX 147894923 147895079 -14704851 + L1ME3A LINE L1 5707 5876 -294 240 188 0 0 chrX 147895362 147895410 -14704520 + (CA)n Simple_repeat Simple_repeat 1 48 0 199 154 19 19 chrX 147895899 147895951 -14703979 + (TA)n Simple_repeat Simple_repeat 1 52 0 271 395 87 0 chrX 147896799 147896994 -14702936 + L3 LINE CR1 148 359 -1218 4290 144 35 6 chrX 147897208 147897921 -14702009 + L1PA16 LINE L1 5424 6157 -9 218 228 272 0 chrX 147897956 147898048 -14701882 - L2 LINE L2 -2 3311 3195 264 149 0 0 chrX 147898074 147898121 -14701809 + (TG)n Simple_repeat Simple_repeat 2 48 0 441 314 68 11 chrX 147898126 147898317 -14701613 + MIR SINE MIR 1 202 -60 516 277 77 73 chrX 147898317 147898617 -14701313 + MLT1J1 LTR MaLR 1 301 -145 354 61 0 0 chrX 147898622 147898671 -14701259 + (TG)n Simple_repeat Simple_repeat 1 49 0 257 435 6 6 chrX 147898800 147898961 -14700969 - L2 LINE L2 -214 3058 2898 428 229 65 33 chrX 147899152 147899305 -14700625 + L3 LINE CR1 626 783 -794 1911 92 4 0 chrX 147899453 147899702 -14700228 + AluSp SINE Alu 1 250 -63 486 285 113 60 chrX 147899760 147899874 -14700056 + L3 LINE CR1 1238 1345 -232 2005 169 32 8 chrX 147899874 147900253 -14699677 - MLT1B LTR MaLR 0 390 3 486 285 113 60 chrX 147900253 147900422 -14699508 + L3 LINE CR1 1345 1536 -41 190 278 37 0 chrX 147900707 147900761 -14699169 - MIR SINE MIR -102 160 105 345 47 0 0 chrX 147901634 147901677 -14698253 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 817 219 0 41 chrX 147901947 147902143 -14697787 - MER5A DNA MER1_type 0 189 2 525 295 37 46 chrX 147902712 147902929 -14697001 + MIR SINE MIR 41 255 -7 2027 172 86 8 chrX 147903344 147903739 -14696191 - MSTB LTR MaLR 0 426 1 8461 188 15 11 chrX 147903739 147905385 -14694545 - MSTB-int LTR MaLR 0 1651 1 1298 187 42 4 chrX 147905385 147905741 -14694189 - MSTB LTR MaLR 0 426 1 327 337 25 25 chrX 147906280 147906556 -14693374 - L1ME4a LINE L1 -267 5854 5579 905 295 131 51 chrX 147906573 147907139 -14692791 - L2 LINE L2 -337 2977 2367 493 325 47 5 chrX 147907320 147907511 -14692419 + MIR SINE MIR 58 256 -6 295 376 38 0 chrX 147908587 147908720 -14691210 - L3b LINE CR1 -94 1489 1352 24 85 0 0 chrX 147909004 147909063 -14690867 + AT_rich Low_complexity Low_complexity 1 59 0 418 305 117 42 chrX 147910120 147910454 -14689476 - MLT1J1 LTR MaLR -22 424 66 276 325 41 32 chrX 147910721 147910844 -14689086 + MIR3 SINE MIR 15 138 -70 2274 165 24 3 chrX 147910845 147911227 -14688703 + MLT1B LTR MaLR 1 390 0 437 77 11 55 chrX 147911455 147911546 -14688384 + (GGGAA)n Simple_repeat Simple_repeat 4 90 0 196 236 100 109 chrX 147911978 147912088 -14687842 - L2 LINE L2 -8 3264 3156 249 355 79 19 chrX 147912986 147913200 -14686730 - MIR SINE MIR 0 262 36 198 204 163 0 chrX 147913854 147913903 -14686027 - MER5A DNA MER1_type -22 167 111 562 256 32 68 chrX 147914777 147914996 -14684934 - MER58C DNA MER1_type -4 211 1 1530 217 130 44 chrX 147915174 147915678 -14684252 + MLT1F1 LTR MaLR 1 567 0 709 157 0 183 chrX 147916040 147916275 -14683655 + 7SK RNA RNA 2 193 0 294 256 56 0 chrX 147916796 147916886 -14683044 + MIR SINE MIR 111 205 -57 253 375 118 34 chrX 147918058 147918524 -14681406 - L2 LINE L2 -350 2964 2460 26 30 0 0 chrX 147919088 147919121 -14680809 + AT_rich Low_complexity Low_complexity 1 33 0 249 361 0 0 chrX 147919377 147919449 -14680481 - L2 LINE L2 0 3272 3201 396 304 70 25 chrX 147919627 147919785 -14680145 - MIR SINE MIR -14 248 84 781 327 48 38 chrX 147921718 147922219 -14677711 + L2 LINE L2 1855 2360 -954 324 0 0 0 chrX 147922226 147922262 -14677668 + (CA)n Simple_repeat Simple_repeat 2 37 0 2129 114 0 0 chrX 147923106 147923428 -14676502 - AluSx SINE Alu 0 324 3 207 306 31 51 chrX 147923931 147924029 -14675901 + L2 LINE L2 2966 3061 -211 25 0 0 0 chrX 147924504 147924529 -14675401 + AT_rich Low_complexity Low_complexity 1 25 0 1431 242 38 22 chrX 147925044 147925412 -14674518 - MLT1A2 LTR MaLR 0 374 1 1254 289 78 31 chrX 147925577 147926158 -14673772 - L1MC4a LINE L1 -1879 5929 5322 644 294 8 65 chrX 147926408 147926656 -14673274 + MLT1F LTR MaLR 3 236 -306 219 278 0 0 chrX 147926752 147926806 -14673124 + MIR3 SINE MIR 153 206 -2 234 136 0 0 chrX 147927190 147927234 -14672696 + (GA)n Simple_repeat Simple_repeat 1 44 0 266 282 8 40 chrX 147927236 147927360 -14672570 + L1MCc LINE L1 192 311 -6112 415 254 49 42 chrX 147927369 147927511 -14672419 + MER3 DNA MER1_type 7 149 -60 353 257 26 26 chrX 147927556 147927669 -14672261 + L1MCc LINE L1 328 440 -5983 2115 116 0 0 chrX 147928218 147928510 -14671420 - AluSx SINE Alu -20 292 1 216 0 0 0 chrX 147928595 147928619 -14671311 + (T)n Simple_repeat Simple_repeat 1 24 0 11275 229 34 18 chrX 147928630 147932955 -14666975 + L1MCc LINE L1 1529 6097 -844 4011 117 17 8 chrX 147932955 147933589 -14666341 + L1MA1 LINE L1 5657 6302 0 28 29 0 0 chrX 147933589 147933624 -14666306 + AT_rich Low_complexity Low_complexity 1 35 0 713 235 26 108 chrX 147933776 147934163 -14665767 + MLT1B LTR MaLR 36 390 0 263 180 0 33 chrX 147935281 147935342 -14664588 - L1MA6 LINE L1 -6 6294 6236 195 42 0 0 chrX 147935735 147935759 -14664171 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 348 332 139 10 chrX 147935916 147936124 -14663806 - MIR SINE MIR -8 254 20 385 279 36 9 chrX 147936340 147936451 -14663479 - MER81 DNA DNA 0 114 1 1312 71 0 0 chrX 147936509 147936678 -14663252 + MLT2A1 LTR ERVL 1 169 -275 4593 73 2 0 chrX 147936678 147937266 -14662664 + HERVL LTR ERVL 3179 3767 -1887 1903 108 0 25 chrX 147937266 147937544 -14662386 + MLT2A1 LTR ERVL 174 444 0 3240 116 47 4 chrX 147937558 147938048 -14661882 + MER9 LTR ERVK 1 511 0 458 270 0 0 chrX 147938048 147938148 -14661782 - AluJ/FLAM SINE Alu -212 100 1 733 239 57 0 chrX 147938265 147938424 -14661506 + MER5A DNA MER1_type 21 188 -1 15892 194 60 11 chrX 147938598 147942614 -14657316 - L1 LINE L1 -3031 4534 320 2247 84 0 0 chrX 147942620 147942895 -14657035 + AluSx SINE Alu 17 291 -21 326 366 55 22 chrX 147943040 147943223 -14656707 + MIR SINE MIR 64 252 -10 206 268 71 0 chrX 147943963 147944019 -14655911 + MER5A DNA MER1_type 130 189 0 201 39 0 0 chrX 147944029 147944055 -14655875 + (TG)n Simple_repeat Simple_repeat 1 26 0 2108 150 8 24 chrX 147944195 147944576 -14655354 - THE1C LTR MaLR 0 375 1 8629 148 42 30 chrX 147944576 147946137 -14653793 - THE1C-int LTR MaLR 0 1580 1 2012 152 21 24 chrX 147946137 147946513 -14653417 - THE1C LTR MaLR 0 375 1 455 209 76 0 chrX 147946704 147946809 -14653121 + MER3 DNA MER1_type 10 122 -87 186 71 0 0 chrX 147946809 147946837 -14653093 + (TA)n Simple_repeat Simple_repeat 2 29 0 1721 230 9 28 chrX 147947489 147947911 -14652019 + MER41B LTR ERV1 115 528 -107 387 0 0 0 chrX 147947924 147947967 -14651963 + (CA)n Simple_repeat Simple_repeat 2 44 0 2640 127 11 16 chrX 147947981 147948415 -14651515 - L1MA3 LINE L1 -48 6257 5826 335 184 4 80 chrX 147948415 147948540 -14651390 + MER41B LTR ERV1 401 475 -11 2128 137 30 24 chrX 147948683 147949056 -14650874 + THE1C LTR MaLR 1 375 0 543 326 20 31 chrX 147949659 147949855 -14650075 - MIR SINE MIR -27 235 42 383 251 101 45 chrX 147950114 147950293 -14649637 - MIR SINE MIR 0 262 74 184 357 87 16 chrX 147950309 147950435 -14649495 + L2 LINE L2 3160 3294 -19 2384 222 35 116 chrX 147950989 147951515 -14648415 - L1MD2 LINE L1 -4 6355 5788 1910 109 20 24 chrX 147951515 147951809 -14648121 - AluY SINE Alu -18 293 1 2384 222 35 116 chrX 147951809 147951855 -14648075 - L1MD2 LINE L1 -571 5788 5740 2524 104 6 8 chrX 147951855 147952211 -14647719 + THE1A LTR MaLR 1 355 0 10747 127 3 1 chrX 147952211 147953785 -14646145 + THE1A-int LTR MaLR 1 1578 -2 2645 93 0 0 chrX 147953787 147954142 -14645788 + THE1A LTR MaLR 1 355 0 2384 222 35 116 chrX 147954142 147954576 -14645354 - L1MD2 LINE L1 -619 5740 5273 355 115 0 0 chrX 147954576 147954628 -14645302 + MADE1 DNA Mariner 1 52 -28 2384 222 35 116 chrX 147954628 147954903 -14645027 - L1MD2 LINE L1 -1086 5273 5146 2366 63 0 7 chrX 147954903 147955211 -14644719 - AluY SINE Alu 0 306 1 2384 222 35 116 chrX 147955211 147955417 -14644513 - L1MD2 LINE L1 -1213 5146 4925 1354 239 175 14 chrX 147955651 147956006 -14643924 + MER45C DNA AcHobo 1 412 -541 378 203 14 0 chrX 147956134 147956208 -14643722 + MER45C DNA AcHobo 878 952 -1 205 152 0 0 chrX 147957167 147957200 -14642730 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1591 222 26 28 chrX 147957289 147957641 -14642289 - MLT1A1 LTR MaLR -14 351 1 1433 259 88 30 chrX 147957849 147958375 -14641555 - MLT1F1 LTR MaLR -11 556 1 2089 120 11 0 chrX 147958456 147958739 -14641191 + AluSx SINE Alu 1 286 -26 438 296 63 15 chrX 147958969 147959175 -14640755 + HAL1b LINE L1 467 682 -666 1743 192 6 12 chrX 147959240 147959583 -14640347 + MER2 DNA MER2_type 1 341 -3 369 308 89 69 chrX 147960042 147960694 -14639236 + L1M4 LINE L1 2130 2794 -3352 341 271 90 21 chrX 147960728 147960872 -14639058 + L1M4 LINE L1 2890 3043 -3103 3541 217 35 52 chrX 147960936 147962336 -14637594 + L1MCb LINE L1 37 1386 -4852 22 35 0 0 chrX 147962494 147962523 -14637407 + AT_rich Low_complexity Low_complexity 1 29 0 377 280 78 39 chrX 147962757 147963118 -14636812 + L1M4 LINE L1 3595 3969 -2177 1199 291 79 15 chrX 147963174 147963642 -14636288 + MLT1E LTR MaLR 94 591 -2 1028 147 0 3 chrX 147963793 147964070 -14635860 + THE1B LTR MaLR 1 364 0 9036 136 75 2 chrX 147964070 147965514 -14634416 + THE1B-int LTR MaLR 1 1549 -31 2193 184 7 43 chrX 147965514 147965954 -14633976 - MER61B LTR ERV1 -1 424 1 17843 122 16 14 chrX 147965954 147969129 -14630801 - MER61B-int LTR ERV1 0 5217 1992 6231 167 30 5 chrX 147969129 147971165 -14628765 + L1MA1 LINE L1 4209 6302 0 2171 232 17 9 chrX 147971159 147971741 -14628189 + L1MCb LINE L1 2778 3364 -3200 * 2517 116 36 3 chrX 147971747 147972110 -14627820 + THE1C LTR MaLR 1 375 0 7823 134 54 54 chrX 147972110 147972374 -14627556 + THE1C-int LTR MaLR 1 263 -1317 1766 83 64 80 chrX 147972374 147972686 -14627244 - AluYa5 SINE Alu -4 307 1 7823 134 54 54 chrX 147972686 147974002 -14625928 + THE1C-int LTR MaLR 263 1580 0 2429 113 39 6 chrX 147974002 147974365 -14625565 + THE1C LTR MaLR 1 375 0 9423 214 14 14 chrX 147974367 147977013 -14622917 + L1P5 LINE L1 3368 6004 -568 2167 78 0 4 chrX 147978506 147978808 -14621122 + AluY SINE Alu 1 301 0 2999 20 0 0 chrX 147979639 147979995 -14619935 - L1PA3 LINE L1 -1316 4830 4475 7725 14 0 0 chrX 147979995 147981324 -14618606 + L1PA3 LINE L1 4833 6161 0 197 33 33 0 chrX 147982123 147982153 -14617777 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 450 353 30 6 chrX 147983426 147983593 -14616337 - MIR SINE MIR -72 190 20 240 35 0 0 chrX 147983694 147983723 -14616207 + (T)n Simple_repeat Simple_repeat 1 29 0 225 293 238 20 chrX 147983837 147983984 -14615946 - L3 LINE CR1 -1110 467 289 25 31 0 0 chrX 147983987 147984019 -14615911 + AT_rich Low_complexity Low_complexity 1 32 0 839 256 101 5 chrX 147984025 147984244 -14615686 - MIR SINE MIR -21 241 2 326 424 0 0 chrX 147984252 147984422 -14615508 - L3 LINE CR1 -1293 284 115 1457 193 48 92 chrX 147984447 147984861 -14615069 - MSTD LTR MaLR 0 396 1 277 283 28 9 chrX 147986110 147986216 -14613714 - HAL1 LINE L1 -107 2400 2293 368 306 98 37 chrX 147986981 147987226 -14612704 - MLT1H LTR MaLR -95 454 195 277 386 26 13 chrX 147987452 147987605 -14612325 + L2 LINE L2 2899 3053 -219 912 312 40 65 chrX 147987615 147988141 -14611789 + MLT1K LTR MaLR 13 525 -63 403 289 0 0 chrX 147988571 147988685 -14611245 + L2 LINE L2 3200 3313 0 366 332 133 14 chrX 147989384 147989595 -14610335 + L1PBb LINE L1 12 247 -6602 4002 276 41 16 chrX 147989647 147991836 -14608094 + L1PBb LINE L1 961 3158 -3690 498 253 41 0 chrX 147991842 147992012 -14607918 - L1 LINE L1 -2576 3570 3394 1500 109 0 9 chrX 147993948 147994159 -14605771 - AluSg/x SINE Alu -22 288 80 725 343 88 13 chrX 147995305 147995702 -14604228 + L2 LINE L2 1705 2131 -1183 1363 228 35 14 chrX 147995711 147996058 -14603872 - MLT1A1 LTR MaLR -11 354 1 1627 317 95 26 chrX 147996058 147997161 -14602769 + L2 LINE L2 2129 3311 -2 26 0 0 0 chrX 147997175 147997201 -14602729 + AT_rich Low_complexity Low_complexity 1 26 0 583 279 53 56 chrX 147997488 147997829 -14602101 + HAL1b LINE L1 150 489 -859 2144 142 18 5 chrX 147997884 147998265 -14601665 + L1MA8 LINE L1 5894 6279 -12 32 67 0 0 chrX 147998403 147998463 -14601467 + AT_rich Low_complexity Low_complexity 1 60 0 31 26 0 0 chrX 147999271 147999309 -14600621 + AT_rich Low_complexity Low_complexity 1 38 0 858 98 0 16 chrX 147999609 147999732 -14600198 - AluY SINE Alu -1 310 190 361 286 45 15 chrX 148000055 148000188 -14599742 + MIR SINE MIR 104 240 -22 232 258 0 0 chrX 148000188 148000250 -14599680 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 192 233 67 67 chrX 148000353 148000443 -14599487 + L2 LINE L2 3158 3247 -66 1295 225 28 92 chrX 148001528 148001994 -14597936 + L1M4 LINE L1 15 450 -6092 981 180 12 0 chrX 148002015 148002176 -14597754 + AluJb SINE Alu 128 290 -22 1235 313 13 3 chrX 148002181 148002571 -14597359 + L1M4 LINE L1 476 869 -5673 803 309 127 33 chrX 148003932 148004624 -14595306 - L2 LINE L2 -735 2579 1823 2650 173 20 11 chrX 148004624 148005330 -14594600 + L1MA9 LINE L1 5071 5780 -511 186 164 55 41 chrX 148005332 148005405 -14594525 + (TCTCTG)n Simple_repeat Simple_repeat 2 75 0 251 311 0 0 chrX 148005499 148005560 -14594370 + MER2 DNA MER2_type 282 342 -3 * 411 288 51 0 chrX 148005560 148005660 -14594270 - MER2 DNA MER2_type -239 106 1 1024 148 9 28 chrX 148005660 148005981 -14593949 + L1MA9 LINE L1 5786 6290 -22 188 385 0 0 chrX 148006013 148006104 -14593826 - L2 LINE L2 -1497 1817 1727 207 340 39 26 chrX 148006439 148006592 -14593338 - L2 LINE L2 -834 2480 2326 2011 132 0 0 chrX 148006609 148006889 -14593041 + AluSx SINE Alu 1 280 -32 429 81 0 61 chrX 148006889 148006988 -14592942 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 232 109 55 18 chrX 148007144 148007199 -14592731 + (TA)n Simple_repeat Simple_repeat 1 57 0 216 97 0 0 chrX 148007202 148007233 -14592697 + (TG)n Simple_repeat Simple_repeat 2 32 0 1878 147 119 33 chrX 148008107 148008612 -14591318 + MLT2A2 LTR ERVL 2 554 0 207 250 50 17 chrX 148008613 148008673 -14591257 + MIR SINE MIR 83 144 -64 201 258 45 67 chrX 148008862 148008951 -14590979 + L2 LINE L2 3186 3272 0 1853 159 131 13 chrX 148009974 148010357 -14589573 - MSTA LTR MaLR 0 428 1 760 314 134 34 chrX 148010391 148010914 -14589016 + MLT1K LTR MaLR 11 585 -3 194 171 49 0 chrX 148011040 148011081 -14588849 - L2 LINE L2 -1342 1972 1930 189 306 235 0 chrX 148011512 148011610 -14588320 - L2 LINE L2 -15 3257 3137 185 240 240 0 chrX 148011633 148011708 -14588222 - L2 LINE L2 -1 3312 3220 694 234 69 12 chrX 148011898 148012243 -14587687 - L1MD2 LINE L1 -1 6358 5945 227 194 48 0 chrX 148013052 148013114 -14586816 - LTR66 LTR ERVL -141 469 405 265 347 40 52 chrX 148013180 148013353 -14586577 - MER5B DNA MER1_type -7 171 1 254 310 44 26 chrX 148014054 148014167 -14585763 + L2 LINE L2 2950 3064 -208 27 29 0 0 chrX 148014326 148014360 -14585570 + AT_rich Low_complexity Low_complexity 1 34 0 1787 320 90 21 chrX 148014654 148015741 -14584189 + L2 LINE L2 2148 3303 -10 240 191 61 109 chrX 148015771 148015918 -14584012 - L1MD2 LINE L1 -901 5458 5319 25 0 0 0 chrX 148016217 148016242 -14583688 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 148016308 148016330 -14583600 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrX 148016357 148016377 -14583553 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 183 156 0 0 chrX 148016375 148016407 -14583523 + (TGG)n Simple_repeat Simple_repeat 3 34 0 490 330 22 6 chrX 148016423 148016602 -14583328 + MIR SINE MIR 6 187 -75 446 197 43 34 chrX 148016617 148016734 -14583196 + MLT1J2 LTR MaLR 1 118 -332 267 296 117 27 chrX 148017199 148017422 -14582508 - L1MD2 LINE L1 -1331 4815 4573 21 0 0 0 chrX 148017472 148017493 -14582437 + AT_rich Low_complexity Low_complexity 1 21 0 490 167 0 17 chrX 148017623 148017667 -14582263 + (TA)n Simple_repeat Simple_repeat 2 45 -74 528 113 0 0 chrX 148017667 148017747 -14582183 - MADE1 DNA Mariner 0 80 1 490 167 0 17 chrX 148017747 148017822 -14582108 + (TA)n Simple_repeat Simple_repeat 45 119 0 28 61 0 0 chrX 148017897 148017946 -14581984 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chrX 148018303 148018326 -14581604 + AT_rich Low_complexity Low_complexity 1 23 0 1415 162 2 146 chrX 148018536 148018962 -14580968 - MLT1A1 LTR MaLR 0 365 1 663 297 35 36 chrX 148019805 148020100 -14579830 + LTR16A LTR ERVL 156 491 0 635 229 97 0 chrX 148020102 148020246 -14579684 - MER5B DNA MER1_type -20 158 1 21 36 0 0 chrX 148021151 148021179 -14578751 + AT_rich Low_complexity Low_complexity 1 28 0 485 249 121 50 chrX 148022259 148022777 -14577153 - L1ME3A LINE L1 -332 5838 5263 1502 124 17 0 chrX 148022805 148023046 -14576884 - L1MA1 LINE L1 0 7721 7477 451 178 0 0 chrX 148023046 148023119 -14576811 - 7SK RNA RNA 0 193 121 641 213 0 16 chrX 148023155 148023282 -14576648 - 7SK RNA RNA -68 125 1 12812 181 27 26 chrX 148023283 148026552 -14573378 - L1MA1 LINE L1 -234 7487 4220 568 14 0 0 chrX 148026552 148026624 -14573306 + L1PA3 LINE L1 6084 6155 0 12812 181 27 26 chrX 148026624 148027926 -14572004 - L1MA1 LINE L1 -3501 4220 2920 3978 248 18 11 chrX 148027919 148028819 -14571111 - L1MA1 LINE L1 -6643 922 17 * 369 327 63 51 chrX 148028957 148029010 -14570920 - L1ME3A LINE L1 -1085 5061 5010 2421 113 19 16 chrX 148029010 148029373 -14570557 - THE1B LTR MaLR 0 364 1 369 327 63 51 chrX 148029373 148029808 -14570122 - L1ME3A LINE L1 -1136 5010 4567 273 244 70 0 chrX 148030152 148030238 -14569692 + L1MC4 LINE L1 7935 8026 -16 547 269 90 74 chrX 148030258 148030581 -14569349 - HAL1 LINE L1 -1062 1445 1118 26 0 0 0 chrX 148031625 148031651 -14568279 + AT_rich Low_complexity Low_complexity 1 26 0 2242 187 39 2 chrX 148031736 148032148 -14567782 - MSTB1 LTR MaLR -2 430 4 530 291 11 37 chrX 148032364 148032553 -14567377 - MIR SINE MIR 0 262 79 2140 82 35 3 chrX 148032977 148033293 -14566637 + L1MA3 LINE L1 2699 3024 -4541 4414 34 2 0 chrX 148033293 148033824 -14566106 + L1PA4 LINE L1 5622 6153 -2 9490 179 13 14 chrX 148033826 148035758 -14564172 + L1MA3 LINE L1 4708 6638 -927 3096 122 21 14 chrX 148035759 148036274 -14563656 + L1MA3 LINE L1 7024 7542 -182 895 110 0 0 chrX 148036281 148036417 -14563513 - L1PB1 LINE L1 0 6151 6016 4656 38 0 2 chrX 148036419 148036976 -14562954 - L1PA5 LINE L1 -8 6146 5591 384 64 0 0 chrX 148036977 148037024 -14562906 + L1PA5 LINE L1 5548 5594 -560 * 1553 131 7 84 chrX 148037019 148037440 -14562490 - L1PB1 LINE L1 -116 6035 5693 7676 201 14 12 chrX 148037455 148039190 -14560740 - L1PB1 LINE L1 -1362 4784 3046 771 261 47 9 chrX 148039317 148039528 -14560402 - MER58A DNA MER1_type 0 224 6 631 24 126 0 chrX 148039622 148039901 -14560029 + (TA)n Simple_repeat Simple_repeat 1 314 0 22 0 0 0 chrX 148039901 148039923 -14560007 + AT_rich Low_complexity Low_complexity 1 22 0 744 239 30 57 chrX 148040716 148041095 -14558835 + L1MC5 LINE L1 6886 7252 -733 326 268 121 15 chrX 148041203 148041401 -14558529 + L1MC5 LINE L1 7260 7478 -483 447 291 40 33 chrX 148041490 148041792 -14558138 + L1MC5 LINE L1 7608 7911 -50 2290 114 0 0 chrX 148042421 148042727 -14557203 - AluSx SINE Alu -6 306 1 265 293 47 28 chrX 148043049 148043155 -14556775 + L2 LINE L2 3206 3313 0 211 232 43 87 chrX 148043184 148043253 -14556677 - MIR SINE MIR -148 114 49 216 0 0 0 chrX 148043953 148043977 -14555953 + (TAA)n Simple_repeat Simple_repeat 1 24 0 479 214 62 36 chrX 148044460 148044572 -14555358 + L2 LINE L2 3194 3308 -5 335 363 130 31 chrX 148044806 148045228 -14554702 + L2 LINE L2 2809 3272 0 757 341 37 33 chrX 148045631 148046039 -14553891 + LTR33 LTR ERVL 1 413 -108 1871 183 22 8 chrX 148046039 148046399 -14553531 + MLT1A1 LTR MaLR 1 365 0 757 341 37 33 chrX 148046399 148046506 -14553424 + LTR33 LTR ERVL 413 518 -3 396 277 0 15 chrX 148046586 148046716 -14553214 + MER104 DNA Tc2 28 155 -25 2138 151 79 17 chrX 148046877 148047280 -14552650 + MSTA LTR MaLR 1 428 0 1145 206 97 37 chrX 148047462 148047811 -14552119 - MLT1A2 LTR MaLR -4 370 1 2048 223 14 5 chrX 148047811 148048229 -14551701 - MLT1A2-int LTR MaLR 0 1735 1314 195 287 96 21 chrX 148048781 148048875 -14551055 - L2 LINE L2 -66 3247 3147 212 262 0 0 chrX 148048995 148049037 -14550893 - L2 LINE L2 -345 2968 2927 1068 193 11 0 chrX 148049131 148049312 -14550618 + MER20 DNA MER1_type 2 184 -35 222 271 42 0 chrX 148049592 148049640 -14550290 + L2 LINE L2 3234 3283 -30 989 316 231 9 chrX 148049983 148050863 -14549067 - L2 LINE L2 -584 2730 1656 226 314 23 0 chrX 148051264 148051350 -14548580 - L1MC4 LINE L1 -1341 6701 6614 * 233 291 0 23 chrX 148051278 148051364 -14548566 + L1MC4 LINE L1 6614 6697 -1345 235 218 51 0 chrX 148051367 148051445 -14548485 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 249 261 0 43 chrX 148051446 148051538 -14548392 + L1MC4 LINE L1 6614 6701 -1341 200 244 0 0 chrX 148051539 148051580 -14548350 + (TA)n Simple_repeat Simple_repeat 1 41 0 320 283 0 22 chrX 148051601 148051693 -14548237 + L1MC4 LINE L1 6614 6703 -1339 351 0 0 0 chrX 148051883 148051922 -14548008 + (TA)n Simple_repeat Simple_repeat 1 39 0 183 152 0 0 chrX 148052015 148052061 -14547869 + (TA)n Simple_repeat Simple_repeat 2 47 0 226 94 0 0 chrX 148052079 148052111 -14547819 + MLT2B3 LTR ERVL 523 554 0 551 274 106 71 chrX 148052386 148052936 -14546994 + L1ME4a LINE L1 5549 6117 -4 219 178 0 22 chrX 148053171 148053216 -14546714 + CT-rich Low_complexity Low_complexity 1 44 0 4179 134 234 74 chrX 148053623 148054947 -14544983 - pTR5 LTR ERV1 0 2438 743 305 316 0 0 chrX 148054954 148055030 -14544900 + MIR SINE MIR 67 142 -66 4336 169 8 10 chrX 148055032 148055860 -14544070 - L1MA6 LINE L1 -3 6297 5471 2316 147 1 0 chrX 148055860 148056328 -14543602 + L1MA6 LINE L1 4982 5450 -744 270 260 0 26 chrX 148056329 148056406 -14543524 + MIR3 SINE MIR 133 207 -1 363 44 0 0 chrX 148056730 148056775 -14543155 + (TG)n Simple_repeat Simple_repeat 1 45 0 18355 176 30 36 chrX 148057039 148060392 -14539538 + L1M4 LINE L1 18 3348 -4217 2675 45 0 0 chrX 148060392 148060701 -14539229 + AluY SINE Alu 1 309 -2 18355 176 30 36 chrX 148060701 148061013 -14538917 + L1M4 LINE L1 3348 3660 -3905 5172 116 8 16 chrX 148061050 148061871 -14538059 + L1MA2 LINE L1 5490 6304 0 478 146 0 78 chrX 148061888 148061991 -14537939 - L1MA6 LINE L1 -1161 4985 4891 2351 68 7 10 chrX 148062014 148062324 -14537606 + AluY SINE Alu 1 309 -2 235 281 0 0 chrX 148062403 148062460 -14537470 + (TG)n Simple_repeat Simple_repeat 2 58 0 2608 43 0 3 chrX 148062542 148062846 -14537084 - AluY SINE Alu -8 303 1 186 229 73 62 chrX 148062994 148063090 -14536840 - L3 LINE CR1 -482 1095 999 575 273 18 18 chrX 148064084 148064249 -14535681 - MER97c DNA MER1_type? -925 165 1 336 83 0 0 chrX 148064532 148064580 -14535350 + (CA)n Simple_repeat Simple_repeat 1 48 0 830 160 34 0 chrX 148064810 148064985 -14534945 + L1 LINE L1 5117 5297 -849 599 249 68 36 chrX 148067094 148067553 -14532377 + L1MEc LINE L1 873 5538 -2339 474 215 145 0 chrX 148067554 148067740 -14532190 + L1M4 LINE L1 5185 5397 -2168 2510 134 19 5 chrX 148067768 148068491 -14531439 - THE1C-int LTR MaLR -807 773 1 2137 143 5 21 chrX 148068493 148068870 -14531060 - THE1C LTR MaLR -2 373 3 17732 44 2 0 chrX 148069736 148072652 -14527278 - L1PA5 LINE L1 -4 6150 3179 423 316 84 8 chrX 148073096 148073346 -14526584 + HAL1b LINE L1 247 515 -833 280 278 71 78 chrX 148073346 148073578 -14526352 + MLT1J2 LTR MaLR 1 242 -269 2674 90 3 0 chrX 148073578 148073932 -14525998 + THE1A LTR MaLR 1 355 0 280 278 71 78 chrX 148073932 148073978 -14525952 + MLT1J2 LTR MaLR 242 287 -224 2334 214 15 11 chrX 148074017 148074743 -14525187 + L1M4 LINE L1 6458 7185 -408 824 257 55 15 chrX 148074761 148075033 -14524897 + MLT1C LTR MaLR 177 459 -8 228 283 0 0 chrX 148075047 148075100 -14524830 + MLT1J LTR MaLR 286 338 -173 1503 213 66 29 chrX 148075164 148075573 -14524357 + Charlie8 DNA MER1_type 482 905 -1512 559 300 48 4 chrX 148075658 148075888 -14524042 + Charlie8 DNA MER1_type 1777 2016 -401 664 237 75 0 chrX 148076060 148076233 -14523697 + Charlie4 DNA MER1_type 42 227 -1734 342 283 111 0 chrX 148077225 148077324 -14522606 + L2 LINE L2 3203 3312 -1 233 148 0 19 chrX 148077705 148077759 -14522171 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 2414 100 0 0 chrX 148078732 148079041 -14520889 - AluSx SINE Alu -3 309 1 404 208 31 0 chrX 148079064 148079160 -14520770 + MLT2B1 LTR ERVL 1 99 -421 2721 149 13 4 chrX 148079166 148079623 -14520307 - L1PA16 LINE L1 -9 6157 5697 376 248 0 0 chrX 148079623 148079728 -14520202 + L1P LINE L1 3111 3215 -2931 2703 84 19 8 chrX 148079735 148080102 -14519828 + MLT2A1 LTR ERVL 1 371 -73 319 238 20 14 chrX 148080107 148080211 -14519719 + L1MC4 LINE L1 1992 6983 -1339 370 93 0 0 chrX 148080214 148080268 -14519662 + MLT2A1 LTR ERVL 391 444 0 1750 209 62 19 chrX 148080268 148080737 -14519193 + L1 LINE L1 3217 3705 -2441 753 222 18 134 chrX 148080737 148081079 -14518851 + MLT2D LTR ERVL 102 403 -11 24 32 0 0 chrX 148081780 148081811 -14518119 + AT_rich Low_complexity Low_complexity 1 31 0 182 128 26 0 chrX 148082988 148083027 -14516903 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 2012 183 56 17 chrX 148083503 148083544 -14516386 - MSTB LTR MaLR 0 426 388 1977 139 7 3 chrX 148083544 148083838 -14516092 + AluSq SINE Alu 1 295 -18 2012 183 56 17 chrX 148083838 148084206 -14515724 - MSTB LTR MaLR -38 388 1 2254 79 0 0 chrX 148085180 148085500 -14514430 - AluY SINE Alu 0 320 1 23 0 0 0 chrX 148086062 148086085 -14513845 + AT_rich Low_complexity Low_complexity 1 23 0 210 213 0 0 chrX 148086558 148086582 -14513348 + GA-rich Low_complexity Low_complexity 1 24 -295 2111 83 0 4 chrX 148086582 148086847 -14513083 + AluSc SINE Alu 1 264 -45 210 213 0 0 chrX 148086847 148086877 -14513053 + GA-rich Low_complexity Low_complexity 23 319 0 210 136 0 0 chrX 148086896 148086940 -14512990 + (TG)n Simple_repeat Simple_repeat 1 44 0 180 388 91 0 chrX 148087436 148087601 -14512329 + L2 LINE L2 2490 2669 -645 1067 76 0 0 chrX 148087670 148087802 -14512128 + AluY SINE Alu 1 132 -179 421 329 51 38 chrX 148087803 148088040 -14511890 + L2 LINE L2 2736 2975 -339 282 345 86 30 chrX 148088078 148088379 -14511551 + L2 LINE L2 2378 2695 -619 495 296 122 11 chrX 148088803 148088992 -14510938 + MIR SINE MIR 43 252 -10 2093 180 39 45 chrX 148089890 148090356 -14509574 - MLT2C2 LTR ERVL 0 464 2 436 370 33 9 chrX 148090538 148090749 -14509181 - MIR SINE MIR -37 225 10 608 240 0 0 chrX 148090833 148090958 -14508972 - MIR SINE MIR -24 238 114 440 294 81 77 chrX 148091390 148091897 -14508033 - MLT1J LTR MaLR -2 509 1 1685 196 90 23 chrX 148092058 148092457 -14507473 + MSTB LTR MaLR 1 426 0 612 281 0 7 chrX 148092457 148092596 -14507334 - MIR SINE MIR -102 160 23 267 169 0 0 chrX 148094674 148094733 -14505197 + L1ME4a LINE L1 5865 5923 -198 1552 189 0 7 chrX 148094989 148095259 -14504671 + AluJb SINE Alu 1 268 -44 411 21 0 0 chrX 148095270 148095318 -14504612 + (TG)n Simple_repeat Simple_repeat 1 48 0 361 321 9 18 chrX 148095834 148095946 -14503984 + MER5A DNA MER1_type 78 188 -1 2239 172 97 27 chrX 148096049 148096525 -14503405 - LTR22 LTR ERVK 0 509 1 348 350 10 105 chrX 148096725 148096832 -14503098 - L2 LINE L2 0 3272 3156 1808 232 36 26 chrX 148096832 148097328 -14502602 - MLT1D LTR MaLR -4 501 1 348 350 10 105 chrX 148097328 148097526 -14502404 - L2 LINE L2 -116 3156 2996 227 316 109 23 chrX 148097518 148097692 -14502238 + MIR3 SINE MIR 10 196 -66 * 279 197 180 25 chrX 148097779 148097901 -14502029 + MER53 DNA DNA 7 147 -42 420 147 116 0 chrX 148097925 148098020 -14501910 - L1MA7 LINE L1 -1 6290 6185 33 43 0 0 chrX 148098057 148098104 -14501826 + AT_rich Low_complexity Low_complexity 1 47 0 1021 147 9 53 chrX 148098109 148098334 -14501596 + L1MA8 LINE L1 5892 6106 -185 603 302 18 27 chrX 148098582 148098804 -14501126 + MIR SINE MIR 6 225 -37 2415 66 0 35 chrX 148098857 148099176 -14500754 - AluY SINE Alu -3 308 1 216 225 34 124 chrX 148099299 148099388 -14500542 - L2 LINE L2 -47 3225 3145 262 226 8 89 chrX 148099825 148099949 -14499981 + LTR33A LTR ERVL 407 520 -3 1132 352 39 30 chrX 148100081 148100856 -14499074 - L2 LINE L2 -424 2890 2109 304 283 44 26 chrX 148100857 148100970 -14498960 - L2 LINE L2 -1314 2000 1886 11947 147 41 30 chrX 148100988 148102105 -14497825 + Tigger1 DNA MER2_type 196 1300 -1118 367 77 0 77 chrX 148102105 148102120 -14497810 - L1PA6 LINE L1 -4 6150 6135 201 39 0 0 chrX 148102120 148102146 -14497784 + (TA)n Simple_repeat Simple_repeat 2 27 0 367 77 0 77 chrX 148102146 148102195 -14497735 - L1PA6 LINE L1 -19 6135 6091 11947 147 41 30 chrX 148102195 148102653 -14497277 + Tigger1 DNA MER2_type 1300 1752 -666 372 34 34 0 chrX 148102653 148102712 -14497218 - L1MA3 LINE L1 0 6305 6245 11947 147 41 30 chrX 148102712 148103335 -14496595 + Tigger1 DNA MER2_type 1752 2418 0 244 303 110 0 chrX 148103535 148103680 -14496250 + MLT1K LTR MaLR 413 573 -15 1746 173 49 32 chrX 148103682 148104051 -14495879 + THE1C LTR MaLR 1 375 0 386 276 104 47 chrX 148105570 148105762 -14494168 - MIR SINE MIR -3 259 57 251 309 8 81 chrX 148105945 148106068 -14493862 + L2 LINE L2 2541 2654 -660 1744 220 115 23 chrX 148106373 148106815 -14493115 + MLT2B1 LTR ERVL 1 554 0 372 364 40 40 chrX 148106834 148107136 -14492794 - MLT1J LTR MaLR -203 308 7 2396 88 7 0 chrX 148108023 148108328 -14491602 + AluSp SINE Alu 1 307 -6 204 229 21 0 chrX 148108720 148108768 -14491162 + MIR SINE MIR 213 261 -1 1315 189 30 27 chrX 148108923 148109251 -14490679 + L1MA7 LINE L1 5953 6281 -10 31 0 0 0 chrX 148109260 148109291 -14490639 + AT_rich Low_complexity Low_complexity 1 31 0 4040 155 17 18 chrX 148109931 148110641 -14489289 - MER50 LTR ERV1 -25 709 1 729 235 65 5 chrX 148112014 148112214 -14487716 + LTR33A LTR ERVL 299 510 -13 479 350 92 31 chrX 148112721 148112957 -14486973 + L3 LINE CR1 926 1185 -392 789 274 6 0 chrX 148112957 148113132 -14486798 - MER45A DNA AcHobo 0 178 3 479 350 92 31 chrX 148113132 148113189 -14486741 + L3 LINE CR1 1185 1237 -340 189 0 0 0 chrX 148113592 148113613 -14486317 + (CAA)n Simple_repeat Simple_repeat 2 22 0 244 336 34 42 chrX 148113918 148114037 -14485893 - MER5B DNA MER1_type -60 118 1 2018 168 91 15 chrX 148114775 148115173 -14484757 - MSTA LTR MaLR 0 428 1 25 0 0 0 chrX 148115179 148115204 -14484726 + AT_rich Low_complexity Low_complexity 1 25 0 718 306 102 42 chrX 148115270 148115652 -14484278 - MLT1I LTR MaLR -2 407 3 26 0 0 0 chrX 148115707 148115733 -14484197 + AT_rich Low_complexity Low_complexity 1 26 0 190 286 0 0 chrX 148115985 148116041 -14483889 - L2 LINE L2 0 3313 3258 2437 50 9 31 chrX 148116178 148116496 -14483434 - AluY SINE Alu 0 311 1 1663 153 69 0 chrX 148116951 148117225 -14482705 + AluJb SINE Alu 3 295 -17 452 273 37 23 chrX 148117415 148117595 -14482335 - MIR SINE MIR -11 251 72 1499 193 55 7 chrX 148118416 148118706 -14481224 + AluJb SINE Alu 1 304 -8 22 0 0 0 chrX 148118929 148118951 -14480979 + AT_rich Low_complexity Low_complexity 1 22 0 2191 109 0 0 chrX 148119349 148119632 -14480298 + AluSg SINE Alu 1 283 -27 448 181 24 0 chrX 148119667 148119750 -14480180 - L1M2 LINE L1 -751 5540 5456 4262 192 30 5 chrX 148119764 148120684 -14479246 + L1 LINE L1 4270 5212 -934 885 144 17 12 chrX 148120714 148120887 -14479043 + L1MB8 LINE L1 6005 6178 0 1827 150 0 49 chrX 148121004 148121330 -14478600 - AluSx SINE Alu -2 310 1 2406 194 36 11 chrX 148121732 148122573 -14477357 - MER54A LTR ERVL 0 901 1 343 281 56 0 chrX 148123087 148123176 -14476754 - MER5B DNA MER1_type -83 95 2 731 291 55 24 chrX 148123613 148123867 -14476063 + MIR SINE MIR 1 262 0 186 167 48 0 chrX 148123889 148123931 -14475999 + MIR SINE MIR 151 194 -68 186 292 168 36 chrX 148123938 148124075 -14475855 - L2 LINE L2 0 3313 3159 934 290 29 0 chrX 148125180 148125425 -14474505 - MIR SINE MIR -7 255 4 884 294 35 0 chrX 148126015 148126246 -14473684 + MIR SINE MIR 3 241 -21 192 399 15 30 chrX 148127648 148127781 -14472149 + MIR SINE MIR 16 146 -62 198 258 61 0 chrX 148128923 148128989 -14470941 - MIR3 SINE MIR -2 206 137 342 129 14 0 chrX 148129003 148129073 -14470857 + L1PA16 LINE L1 6079 6149 -17 273 325 91 43 chrX 148130326 148130557 -14469373 - L2 LINE L2 -189 3083 2842 31 0 0 24 chrX 148130818 148130840 -14469090 + AT_rich Low_complexity Low_complexity 1 23 -18 2409 93 3 0 chrX 148130840 148131151 -14468779 + AluSp SINE Alu 2 313 0 31 0 0 24 chrX 148131151 148131170 -14468760 + AT_rich Low_complexity Low_complexity 23 41 0 206 32 32 0 chrX 148131938 148131969 -14467961 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3294 79 31 0 chrX 148132917 148133361 -14466569 - LTR22A LTR ERVK 0 458 1 415 250 48 40 chrX 148133471 148133595 -14466335 + L2 LINE L2 3189 3313 0 950 190 27 11 chrX 148134071 148134255 -14465675 + MER20 DNA MER1_type 31 217 -2 186 286 0 0 chrX 148134374 148134423 -14465507 - L2 LINE L2 -5 3267 3219 402 239 0 0 chrX 148134492 148134580 -14465350 - MER103 DNA DNA -58 108 21 210 361 89 43 chrX 148134732 148135012 -14464918 - L2 LINE L2 -676 2638 2346 2697 147 20 40 chrX 148135440 148135997 -14463933 - L1MA8 LINE L1 -6 6285 5740 266 279 0 82 chrX 148136552 148136674 -14463256 + MIR SINE MIR 101 212 -50 467 293 53 0 chrX 148137123 148137256 -14462674 + MIR SINE MIR 49 188 -74 257 370 12 12 chrX 148139665 148139830 -14460100 + MLT1J LTR MaLR 143 307 -204 1206 251 7 26 chrX 148140127 148140492 -14459438 - L1M3d LINE L1 -4902 2125 1759 854 278 54 59 chrX 148140490 148141266 -14458664 - HAL1 LINE L1 -907 1600 829 * 225 39 0 0 chrX 148141759 148141785 -14458145 - U6 snRNA snRNA -81 26 1 2212 148 3 16 chrX 148141938 148142310 -14457620 - L1PB1 LINE L1 -3 6148 5782 4132 190 1 1 chrX 148142316 148143111 -14456819 - L1 LINE L1 -3242 2904 2110 10682 185 112 14 chrX 148143118 148145644 -14454286 - L1PBa LINE L1 -4083 2780 6 2337 75 0 23 chrX 148145771 148146076 -14453854 + AluSc SINE Alu 1 298 -11 455 322 7 7 chrX 148149100 148149243 -14450687 + MIR SINE MIR 12 154 -108 665 276 33 19 chrX 148149575 148149785 -14450145 - MIR SINE MIR -3 259 47 2341 85 3 0 chrX 148151019 148151313 -14448617 + AluSg SINE Alu 1 295 -15 2286 100 10 7 chrX 148151317 148151626 -14448304 + AluSx SINE Alu 1 310 -2 644 255 7 13 chrX 148152976 148153125 -14446805 + MIR SINE MIR 46 193 -69 15440 176 34 16 chrX 148153150 148154072 -14445858 + L1M1 LINE L1 13 917 -6648 2519 110 5 32 chrX 148154072 148154446 -14445484 + THE1B LTR MaLR 1 364 0 15440 176 34 16 chrX 148154446 148156001 -14443929 + L1M1 LINE L1 917 2551 -5014 2020 165 21 12 chrX 148156001 148156341 -14443589 + MER61A LTR ERV1 1 343 0 15440 176 34 16 chrX 148156341 148156688 -14443242 + L1M1 LINE L1 2551 2890 -4675 2688 123 7 16 chrX 148156688 148157137 -14442793 + L1MA2 LINE L1 5855 6299 -5 775 315 104 13 chrX 148157518 148157969 -14441961 - MLT1L LTR MaLR -6 609 118 2459 243 56 39 chrX 148158039 148158984 -14440946 + L1ME1 LINE L1 5213 6332 -2 330 236 146 32 chrX 148159239 148159362 -14440568 + L1ME4a LINE L1 5291 5427 -694 329 288 87 53 chrX 148159983 148160341 -14439589 + L1ME LINE L1 5313 5682 -439 282 298 57 32 chrX 148160515 148160639 -14439291 + L2 LINE L2 2055 2181 -1133 291 263 21 21 chrX 148160650 148160745 -14439185 - L2 LINE L2 -423 2891 2797 * 1255 253 35 151 chrX 148160739 148161742 -14438188 + L2 LINE L2 2360 3242 -71 21 0 0 0 chrX 148161768 148161789 -14438141 + AT_rich Low_complexity Low_complexity 1 21 0 313 190 60 30 chrX 148161864 148161964 -14437966 + L1ME4a LINE L1 5984 6086 -35 1482 215 33 71 chrX 148162191 148162643 -14437287 - MER31B LTR ERV1 -31 435 1 1489 262 111 38 chrX 148162722 148163299 -14436631 - MLT1E3 LTR MaLR 0 624 6 703 164 57 14 chrX 148163411 148163551 -14436379 + MER106B DNA MER1_type 6 151 -908 38 81 0 0 chrX 148163557 148163644 -14436286 + AT_rich Low_complexity Low_complexity 1 87 0 742 193 108 0 chrX 148163653 148163819 -14436111 - L1ME LINE L1 -558 5606 5423 1595 65 0 14 chrX 148163823 148164038 -14435892 - L1PA7 LINE L1 -4 6150 5939 629 257 149 20 chrX 148164447 148164789 -14435141 + L1ME4a LINE L1 5583 5968 -153 704 350 70 12 chrX 148164983 148165383 -14434547 + L2 LINE L2 538 960 -2354 527 333 171 33 chrX 148165391 148166000 -14433930 + L2 LINE L2 1101 1793 -1521 777 200 184 78 chrX 148166044 148166299 -14433631 + Charlie1a DNA MER1_type 1 282 -1173 1406 39 0 0 chrX 148166299 148166480 -14433450 - L1P LINE L1 -759 5387 5207 5852 46 0 0 chrX 148166480 148167196 -14432734 + L1PA4 LINE L1 5439 6155 0 4506 212 45 17 chrX 148167226 148168373 -14431557 + Charlie1a DNA MER1_type 271 1448 -7 284 219 14 27 chrX 148168422 148168495 -14431435 - MLT1L LTR MaLR -542 73 2 244 411 69 0 chrX 148168537 148168712 -14431218 + L2 LINE L2 2633 2819 -495 754 318 12 12 chrX 148168738 148168980 -14430950 + MIR SINE MIR 15 256 -6 584 351 62 30 chrX 148168990 148169457 -14430473 + L2 LINE L2 2829 3310 -3 820 153 0 3 chrX 148169471 148169674 -14430256 + MER75 DNA T2_type 1 264 -250 2083 117 3 0 chrX 148170298 148170589 -14429341 + AluSx SINE Alu 1 292 -20 1248 117 27 0 chrX 148170601 148170789 -14429141 + MER75B DNA T2_type 51 243 0 338 353 8 0 chrX 148171112 148171231 -14428699 - MIR3 SINE MIR -11 197 78 200 211 0 19 chrX 148172041 148172093 -14427837 + (CTATT)n Simple_repeat Simple_repeat 4 54 0 38 0 0 0 chrX 148172101 148172139 -14427791 + AT_rich Low_complexity Low_complexity 1 38 0 1459 97 5 5 chrX 148172307 148172513 -14427417 - L1PA10 LINE L1 -5 6163 5958 275 343 7 63 chrX 148172571 148172714 -14427216 + MIR SINE MIR 117 251 -11 21 0 0 0 chrX 148173738 148173759 -14426171 + AT_rich Low_complexity Low_complexity 1 21 0 2469 110 5 26 chrX 148175548 148175931 -14423999 - THE1C LTR MaLR 0 375 1 9356 124 55 11 chrX 148175931 148177444 -14422486 - THE1C-int LTR MaLR 0 1580 1 1338 126 27 18 chrX 148177444 148177667 -14422263 - THE1C LTR MaLR 0 375 151 19227 35 0 0 chrX 148177667 148180008 -14419922 - L1PA3 LINE L1 -2296 3850 1510 12864 27 1 0 chrX 148180008 148182296 -14417634 + L1PA3 LINE L1 3862 6152 -3 925 168 18 0 chrX 148182306 148182473 -14417457 - THE1C LTR MaLR -203 172 3 314 231 58 19 chrX 148182807 148182911 -14417019 - MER20B DNA MER1_type -675 108 1 304 344 22 77 chrX 148183244 148183555 -14416375 + L2 LINE L2 2878 3171 -101 292 311 129 23 chrX 148183927 148184059 -14415871 - MIR SINE MIR -110 152 7 266 295 32 32 chrX 148184348 148184443 -14415487 - MIR3 SINE MIR -7 201 107 453 295 12 24 chrX 148184469 148184635 -14415295 - MER5A DNA MER1_type 0 189 26 196 295 131 0 chrX 148185017 148185078 -14414852 - L3 LINE CR1 -7 1570 1502 813 264 23 67 chrX 148185105 148185404 -14414526 + L2 LINE L2 3021 3306 -7 3602 220 36 51 chrX 148185463 148186613 -14413317 - L1 LINE L1 -1980 4166 3035 1660 176 9 3 chrX 148186616 148186941 -14412989 - L1MA2 LINE L1 0 6304 5977 1535 190 41 41 chrX 148186941 148187305 -14412625 - THE1B LTR MaLR 0 364 1 1194 51 6 40 chrX 148187310 148187486 -14412444 - THE1B-int LTR MaLR -5 1575 1406 6926 192 24 3 chrX 148187488 148188973 -14410957 - L1 LINE L1 -998 5734 4219 1068 138 19 34 chrX 148188973 148189182 -14410748 + THE1C LTR MaLR 184 375 0 2187 273 19 28 chrX 148189182 148189758 -14410172 - L1 LINE L1 -5507 1146 576 5390 271 69 40 chrX 148191040 148192194 -14407736 + L1MCb LINE L1 333 1452 -5112 261 98 0 0 chrX 148192194 148192235 -14407695 + (TA)n Simple_repeat Simple_repeat 1 41 0 5390 271 69 40 chrX 148192235 148193834 -14406096 + L1MCb LINE L1 1452 3003 -3561 2678 187 7 13 chrX 148193834 148194384 -14405546 + L1MA4A LINE L1 5743 6289 -14 5390 271 69 40 chrX 148194384 148196636 -14403294 + L1MCb LINE L1 3003 5746 -818 287 284 19 19 chrX 148196626 148196781 -14403149 + L1MEd LINE L1 925 1079 -5040 * 265 275 28 56 chrX 148196814 148196956 -14402974 + L1MEd LINE L1 1106 1243 -4888 195 388 101 8 chrX 148197149 148197278 -14402652 - MIR3 SINE MIR -65 143 3 238 299 26 13 chrX 148198991 148199068 -14400862 + MIR SINE MIR 74 151 -111 392 298 61 0 chrX 148199269 148199400 -14400530 + MLT1H LTR MaLR 20 158 -391 656 315 50 0 chrX 148199400 148199600 -14400330 + MER63A DNA MER1_type 1 210 0 * 959 290 85 14 chrX 148199600 148199964 -14399966 + MLT1H LTR MaLR 151 540 -9 1575 186 67 28 chrX 148201022 148201383 -14398547 - THE1C LTR MaLR 0 375 1 9208 143 7 45 chrX 148201383 148203022 -14396908 - THE1C-int LTR MaLR 0 1580 3 1789 156 65 11 chrX 148203026 148203378 -14396552 - THE1C LTR MaLR -2 373 3 218 280 256 8 chrX 148203650 148203775 -14396155 - MIR SINE MIR -5 257 102 33 25 0 0 chrX 148204129 148204169 -14395761 + AT_rich Low_complexity Low_complexity 1 40 0 257 326 37 44 chrX 148205284 148205419 -14394511 + L2 LINE L2 2737 2870 -444 374 300 50 57 chrX 148205531 148205671 -14394259 + L2 LINE L2 3134 3272 0 551 246 0 0 chrX 148205739 148205849 -14394081 + MER81 DNA DNA 1 110 -4 481 151 0 0 chrX 148206185 148206258 -14393672 - AluS SINE Alu -240 73 1 23 0 0 0 chrX 148206298 148206321 -14393609 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 148206616 148206638 -14393292 + AT_rich Low_complexity Low_complexity 1 22 0 2894 148 2 0 chrX 148206740 148207219 -14392711 - L1PA14 LINE L1 0 7599 7120 11754 208 61 30 chrX 148207220 148210674 -14389256 - L1PA14 LINE L1 -1376 6208 2628 200 313 38 25 chrX 148211176 148211272 -14388658 + MER5A DNA MER1_type 8 115 -74 2223 94 7 3 chrX 148211274 148211573 -14388357 + AluSx SINE Alu 1 300 -12 198 103 0 0 chrX 148211647 148211676 -14388254 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 198 265 111 26 chrX 148211807 148211924 -14388006 + L3 LINE CR1 1131 1257 -320 272 317 0 0 chrX 148212083 148212165 -14387765 + GA-rich Low_complexity Low_complexity 1 82 0 21 36 0 0 chrX 148213049 148213077 -14386853 + AT_rich Low_complexity Low_complexity 1 28 0 2074 155 116 10 chrX 148213164 148213551 -14386379 + MSTA LTR MaLR 1 428 0 8816 147 19 47 chrX 148213553 148215177 -14384753 + MSTA-int LTR MaLR 3 1580 0 1951 171 116 10 chrX 148215177 148215564 -14384366 + MSTA LTR MaLR 1 428 0 2098 124 13 0 chrX 148216151 148216458 -14383472 + AluSx SINE Alu 1 311 -1 528 93 0 0 chrX 148216462 148216537 -14383393 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 26 50 0 0 chrX 148216660 148216700 -14383230 + AT_rich Low_complexity Low_complexity 1 40 0 3064 152 7 43 chrX 148216888 148217475 -14382455 - L1PA16 LINE L1 -8 6158 5593 7895 191 11 9 chrX 148217504 148220106 -14379824 - L1PB3 LINE L1 -7 6147 3541 1091 294 30 8 chrX 148220126 148220527 -14379403 - L1PB3 LINE L1 -3073 3073 2664 2194 118 10 0 chrX 148222649 148222954 -14376976 + AluSq SINE Alu 1 308 -5 27 49 0 0 chrX 148222955 148222996 -14376934 + AT_rich Low_complexity Low_complexity 1 41 0 489 302 75 24 chrX 148224299 148224511 -14375419 + MIR SINE MIR 14 236 -26 378 284 118 17 chrX 148224541 148224725 -14375205 + MIR SINE MIR 32 231 -31 22 0 0 0 chrX 148225398 148225420 -14374510 + AT_rich Low_complexity Low_complexity 1 22 0 378 304 157 23 chrX 148225963 148226180 -14373750 + MIR SINE MIR 17 262 0 2060 124 0 0 chrX 148226359 148226676 -14373254 - AluSq SINE Alu 0 317 1 333 0 0 0 chrX 148227629 148227666 -14372264 + (TG)n Simple_repeat Simple_repeat 2 38 0 427 274 98 78 chrX 148227681 148227885 -14372045 - MER63A DNA MER1_type 0 210 3 383 286 86 46 chrX 148229089 148229264 -14370666 - MIR SINE MIR -7 255 74 227 286 9 57 chrX 148229942 148230047 -14369883 + LTR67 LTR ERVL 458 557 0 5271 30 0 5 chrX 148230444 148231068 -14368862 - L1PA3 LINE L1 0 6155 5535 1837 31 0 0 chrX 148231068 148231293 -14368637 + L1PA3 LINE L1 5306 5530 -625 2374 94 0 0 chrX 148231883 148232180 -14367750 - AluSg SINE Alu -13 297 1 515 289 0 0 chrX 148232457 148232585 -14367345 + MIR SINE MIR 124 251 -11 518 290 0 25 chrX 148232586 148232748 -14367182 + MIR SINE MIR 105 262 0 2032 124 13 0 chrX 148233020 148233319 -14366611 - AluSg SINE Alu -4 306 4 182 37 37 0 chrX 148234999 148235026 -14364904 + (TG)n Simple_repeat Simple_repeat 1 28 0 1160 226 5 0 chrX 148235068 148235285 -14364645 + MER58A DNA MER1_type 7 224 0 265 378 98 0 chrX 148235817 148235981 -14363949 + MIR SINE MIR 54 233 -29 492 326 103 9 chrX 148237383 148237607 -14362323 + MIR SINE MIR 5 249 -13 21 36 0 0 chrX 148237621 148237649 -14362281 + AT_rich Low_complexity Low_complexity 1 28 0 1881 189 34 52 chrX 148237736 148238176 -14361754 + MSTB1 LTR MaLR 1 432 0 312 169 0 0 chrX 148238220 148238279 -14361651 + MER53 DNA DNA 7 65 -124 2399 133 13 3 chrX 148238299 148238690 -14361240 - L1PB3 LINE L1 -1 6210 5816 13099 236 13 8 chrX 148238692 148243143 -14356787 - L1PB3 LINE L1 -495 5716 792 3243 205 6 3 chrX 148243168 148243880 -14356050 - L1PB3 LINE L1 -5219 985 1 2404 78 0 0 chrX 148245172 148245468 -14354462 + AluY SINE Alu 2 297 -14 3335 201 20 25 chrX 148245552 148246348 -14353582 - L1MA6 LINE L1 -10 7311 6520 2495 175 77 81 chrX 148246353 148246763 -14353167 + MER4C-int LTR ERV1 5881 6288 -310 297 0 0 0 chrX 148246763 148246796 -14353134 + (TG)n Simple_repeat Simple_repeat 2 34 0 2495 175 77 81 chrX 148246796 148247104 -14352826 + MER4C-int LTR ERV1 6288 6596 -2 876 204 57 88 chrX 148247108 148247186 -14352744 + MER4C LTR ERV1 1 80 -385 192 77 0 0 chrX 148247186 148247212 -14352718 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 876 204 57 88 chrX 148247212 148247760 -14352170 + MER4C LTR ERV1 80 465 0 1068 169 54 65 chrX 148247764 148247903 -14352027 - L1MA6 LINE L1 -743 6424 6285 2185 90 7 7 chrX 148247903 148248213 -14351717 - L1PA8 LINE L1 0 6172 5863 1982 151 0 7 chrX 148248218 148248517 -14351413 - AluSx SINE Alu -15 297 1 1068 169 54 65 chrX 148248517 148248766 -14351164 - L1MA6 LINE L1 -886 6281 6091 * 1453 35 0 0 chrX 148248752 148248924 -14351006 - L1PA6 LINE L1 -276 5878 5707 5392 203 32 7 chrX 148248925 148250033 -14349897 - L1MA6 LINE L1 -1958 5209 4063 1767 163 76 20 chrX 148250033 148250388 -14349542 + THE1C LTR MaLR 1 375 0 5392 203 32 7 chrX 148250388 148250548 -14349382 - L1MA6 LINE L1 -3104 4063 3909 3342 135 0 0 chrX 148250630 148251141 -14348789 - L1PA13 LINE L1 -8 6155 5645 1498 179 67 28 chrX 148251143 148251501 -14348429 + THE1C LTR MaLR 3 374 -1 2519 122 144 2 chrX 148251502 148251919 -14348011 + THE1C-int LTR MaLR 1 476 -1104 294 207 0 0 chrX 148251924 148251982 -14347948 - L1PA13 LINE L1 -6645 142 85 411 289 30 15 chrX 148252238 148252373 -14347557 + LTR45 LTR ERV1 389 525 0 705 273 48 14 chrX 148252435 148252713 -14347217 - L1MA6 LINE L1 -6892 276 5 1060 287 23 78 chrX 148253749 148254486 -14345444 + L2 LINE L2 2599 3308 -5 216 67 0 0 chrX 148254491 148254521 -14345409 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 504 333 36 20 chrX 148254523 148254718 -14345212 - MIR SINE MIR -55 207 10 305 269 32 32 chrX 148254876 148254969 -14344961 + MIR3 SINE MIR 108 200 -8 287 88 404 0 chrX 148257296 148257353 -14342577 + MADE1 DNA Mariner 1 80 0 2353 92 0 0 chrX 148257817 148258120 -14341810 + AluSq SINE Alu 1 303 -10 2522 122 8 0 chrX 148259817 148260178 -14339752 + THE1B LTR MaLR 1 364 0 258 32 0 0 chrX 148261365 148261396 -14338534 + (TG)n Simple_repeat Simple_repeat 2 32 0 1166 178 8 17 chrX 148262892 148263128 -14336802 - MER96B DNA MER1_type? -183 234 1 838 92 8 0 chrX 148263163 148263283 -14336647 - L1PB2 LINE L1 -4 6147 6027 248 276 0 0 chrX 148263590 148263648 -14336282 + MIR SINE MIR 119 176 -86 238 228 22 76 chrX 148263950 148264042 -14335888 - L2 LINE L2 0 3313 3227 248 271 0 0 chrX 148264109 148264168 -14335762 - L2 LINE L2 -5 3308 3250 638 283 59 38 chrX 148264198 148264435 -14335495 + MIR SINE MIR 20 261 -1 449 245 23 12 chrX 148264707 148264854 -14335076 + MER63 DNA MER1_type 686 1061 0 528 161 24 8 chrX 148265004 148265128 -14334802 + CT-rich Low_complexity Low_complexity 1 126 0 576 159 0 0 chrX 148265130 148265243 -14334687 - L1MA7 LINE L1 0 6291 6179 1523 185 18 0 chrX 148265249 148265535 -14334395 + L1PB4 LINE L1 5851 6141 -15 511 113 0 12 chrX 148265535 148265615 -14334315 - AluSg SINE Alu -231 79 1 22 0 0 0 chrX 148265639 148265661 -14334269 + AT_rich Low_complexity Low_complexity 1 22 0 614 213 102 44 chrX 148265666 148265891 -14334039 - L1MA7 LINE L1 -101 6190 5953 5353 53 6 3 chrX 148265905 148266579 -14333351 - L1PA7 LINE L1 -16 6453 5778 12070 98 5 2 chrX 148266581 148268330 -14331600 - L1PA7 LINE L1 -1463 4998 3246 3477 107 2 26 chrX 148268318 148268822 -14331108 - L1PA7 LINE L1 -5968 493 2 * 200 400 64 8 chrX 148269420 148269545 -14330385 - MIR SINE MIR -108 154 23 2235 107 3 3 chrX 148269640 148269940 -14329990 + AluSx SINE Alu 1 300 -12 2429 166 33 17 chrX 148270085 148270602 -14329328 - L1MA4 LINE L1 -5 6295 5771 6271 103 0 0 chrX 148270614 148271608 -14328322 - L1PA10 LINE L1 0 6168 5170 630 161 28 142 chrX 148271884 148272095 -14327835 - MER53 DNA DNA 0 189 3 25 31 0 0 chrX 148272402 148272434 -14327496 + AT_rich Low_complexity Low_complexity 1 32 0 2006 120 28 3 chrX 148273026 148273317 -14326613 - AluSx SINE Alu -14 298 1 293 333 29 22 chrX 148274321 148274459 -14325471 - MIR SINE MIR -7 255 117 330 26 0 0 chrX 148274626 148274665 -14325265 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2107 124 0 0 chrX 148275120 148275423 -14324507 + AluSx SINE Alu 1 303 0 547 333 63 8 chrX 148275751 148275988 -14323942 - MIR SINE MIR -12 250 1 258 344 19 32 chrX 148276367 148276524 -14323406 - MER117 DNA MER1_type -42 155 1 1740 236 22 60 chrX 148276831 148277331 -14322599 + MLT2B3 LTR ERVL 1 374 -79 420 277 0 29 chrX 148278007 148278144 -14321786 - L2 LINE L2 -675 2639 2507 283 311 66 8 chrX 148278338 148278460 -14321470 + MER102b DNA MER1_type 213 341 0 505 314 81 34 chrX 148278488 148278784 -14321146 - L2 LINE L2 -576 2738 2429 22 0 0 0 chrX 148279713 148279735 -14320195 + AT_rich Low_complexity Low_complexity 1 22 0 276 30 0 0 chrX 148280932 148280965 -14318965 + (GCTG)n Simple_repeat Simple_repeat 4 36 0 327 286 41 61 chrX 148282884 148283031 -14316899 - MIR3 SINE MIR -2 206 63 337 229 47 104 chrX 148283058 148283250 -14316680 + L1MC4 LINE L1 7861 8041 -1 475 270 64 34 chrX 148283452 148283656 -14316274 - MLT1K LTR MaLR 0 588 379 1059 8 0 0 chrX 148283657 148283778 -14316152 - L1PA2 LINE L1 0 6155 6035 1981 26 0 0 chrX 148283778 148284011 -14315919 + L1PA6 LINE L1 5713 5945 -209 280 331 16 25 chrX 148284086 148284207 -14315723 - MLT1K LTR MaLR -280 308 189 2625 48 0 7 chrX 148284531 148284841 -14315089 + AluY SINE Alu 1 308 -3 22 35 0 0 chrX 148284967 148284996 -14314934 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 148285725 148285748 -14314182 + AT_rich Low_complexity Low_complexity 1 23 0 2294 80 0 7 chrX 148285760 148286062 -14313868 - AluY SINE Alu -11 300 1 207 333 0 14 chrX 148286348 148286417 -14313513 - L2 LINE L2 -25 3247 3180 502 313 123 24 chrX 148286508 148286719 -14313211 - L2 LINE L2 -601 2713 2482 1250 217 82 80 chrX 148286726 148287191 -14312739 + MER31B LTR ERV1 1 466 0 210 143 0 0 chrX 148287230 148287265 -14312665 + (TG)n Simple_repeat Simple_repeat 2 36 0 229 369 80 17 chrX 148287617 148287793 -14312137 + MIR SINE MIR 2 188 -74 187 260 110 0 chrX 148287844 148287917 -14312013 + MIR SINE MIR 158 238 -24 3865 158 24 42 chrX 148287930 148288730 -14311200 + LTR1 LTR ERV1 1 785 0 21 36 0 0 chrX 148288887 148288915 -14311015 + AT_rich Low_complexity Low_complexity 1 28 0 490 257 62 112 chrX 148288978 148289282 -14310648 + L2 LINE L2 3021 3309 -4 21 0 0 0 chrX 148289323 148289344 -14310586 + AT_rich Low_complexity Low_complexity 1 21 0 2140 97 42 0 chrX 148289410 148289699 -14310231 - AluSx SINE Alu -11 301 1 355 268 0 0 chrX 148289709 148289791 -14310139 - MIR SINE MIR -110 152 71 544 286 87 6 chrX 148290481 148290642 -14309288 + MIR SINE MIR 21 194 -68 261 352 117 12 chrX 148290785 148290947 -14308983 + MIR SINE MIR 84 262 0 909 200 0 44 chrX 148291069 148291249 -14308681 + FRAM SINE Alu 1 172 -4 696 272 71 53 chrX 148291304 148291754 -14308176 + MLT1G1 LTR MaLR 1 535 -7 380 293 64 21 chrX 148291821 148291961 -14307969 - MIR SINE MIR -84 178 33 23 0 0 0 chrX 148292828 148292851 -14307079 + AT_rich Low_complexity Low_complexity 1 23 0 1905 141 32 37 chrX 148292888 148293265 -14306665 - THE1C LTR MaLR 0 375 1 435 293 85 37 chrX 148293337 148293525 -14306405 - MIR3 SINE MIR -6 202 6 2248 146 5 13 chrX 148293719 148294097 -14305833 - THE1C LTR MaLR 0 375 1 10339 125 29 5 chrX 148294102 148295640 -14304290 - THE1C-int LTR MaLR -5 1575 1 2103 110 63 33 chrX 148295640 148296004 -14303926 - THE1C LTR MaLR 0 375 1 30 89 0 0 chrX 148296466 148296545 -14303385 + AT_rich Low_complexity Low_complexity 1 79 0 211 340 30 0 chrX 148297618 148297718 -14302212 - MIR SINE MIR 0 262 160 1045 229 201 27 chrX 148297720 148297964 -14301966 + L2 LINE L2 2171 2371 -943 186 71 0 0 chrX 148297964 148297992 -14301938 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1045 229 201 27 chrX 148297992 148298149 -14301781 + L2 LINE L2 2371 2642 -672 832 312 4 9 chrX 148298246 148298510 -14301420 - MIR SINE MIR -1 261 5 223 349 93 8 chrX 148299214 148299343 -14300587 + L2 LINE L2 3132 3271 -1 * 2088 287 160 21 chrX 148299342 148300512 -14299418 + L2 LINE L2 1961 3309 -4 223 337 60 0 chrX 148300640 148300723 -14299207 + L2 LINE L2 3185 3272 0 322 294 34 0 chrX 148301309 148301428 -14298502 + MER94 DNA DNA 1 123 -11 2419 130 6 0 chrX 148301572 148301934 -14297996 + THE1B LTR MaLR 1 364 0 10173 124 33 5 chrX 148301934 148303470 -14296460 + THE1B-int LTR MaLR 1 1580 0 2492 133 11 0 chrX 148303470 148303830 -14296100 + THE1B LTR MaLR 1 364 0 216 340 14 16 chrX 148303986 148304058 -14295872 - MIR SINE MIR -124 84 14 249 198 66 55 chrX 148304088 148304179 -14295751 + L1MC5 LINE L1 7793 7884 -77 1002 203 21 28 chrX 148304466 148304745 -14295185 - L1MB5 LINE L1 -1 6179 5902 969 182 33 0 chrX 148304767 148304981 -14294949 - L1MB5 LINE L1 -252 5926 5706 1675 212 34 16 chrX 148304994 148305007 -14294923 - L1MD1 LINE L1 0 6242 6231 1613 188 110 42 chrX 148305007 148305407 -14294523 - MSTA LTR MaLR 0 428 2 1675 212 34 16 chrX 148305407 148305831 -14294099 - L1MD1 LINE L1 -11 6231 5797 504 235 45 50 chrX 148305838 148306038 -14293892 - L1MD1 LINE L1 -563 5679 5481 2484 136 16 23 chrX 148306040 148306475 -14293455 - L1PA13 LINE L1 0 6163 5732 9208 224 10 7 chrX 148306475 148306770 -14293160 - L1P LINE L1 -2705 3441 3148 3014 91 23 11 chrX 148306770 148307209 -14292721 - MLT2A1 LTR ERVL 0 444 1 9208 224 10 7 chrX 148307209 148309043 -14290887 - L1P LINE L1 -2998 3148 1305 2495 183 10 10 chrX 148309054 148309546 -14290384 - L1MC1 LINE L1 -139 6194 5703 586 269 109 46 chrX 148309561 148309799 -14290131 - L1MDa LINE L1 -6269 271 19 23 68 0 0 chrX 148309866 148309910 -14290020 + AT_rich Low_complexity Low_complexity 1 44 0 252 316 13 0 chrX 148309963 148310039 -14289891 + MIR3 SINE MIR 126 202 -6 427 241 171 88 chrX 148310355 148310583 -14289347 + MIR SINE MIR 1 247 -15 282 309 0 12 chrX 148310670 148310754 -14289176 + MIR SINE MIR 170 252 -10 22 0 0 0 chrX 148311558 148311580 -14288350 + AT_rich Low_complexity Low_complexity 1 22 0 1209 187 110 21 chrX 148312851 148313185 -14286745 - MSTA LTR MaLR 0 364 1 629 297 146 5 chrX 148313187 148313406 -14286524 + MIR SINE MIR 11 260 -2 1038 259 133 49 chrX 148314243 148314791 -14285139 + MLT1G1 LTR MaLR 2 595 0 608 338 98 15 chrX 148315321 148315721 -14284209 + LTR16A LTR ERVL 16 448 -2 226 174 87 0 chrX 148315884 148315930 -14284000 + MER117 DNA MER1_type 42 91 -106 951 193 32 56 chrX 148316089 148316338 -14283592 - L1MB5 LINE L1 0 6174 5932 * 969 270 29 14 chrX 148316336 148316788 -14283142 - L1MCa LINE L1 -3705 2733 2306 500 123 0 0 chrX 148316788 148316861 -14283069 + Tigger2 DNA MER2_type 1 73 -2645 657 269 62 0 chrX 148316894 148317039 -14282891 - MER8 DNA MER2_type -62 177 24 3852 172 39 17 chrX 148317040 148317921 -14282009 - L1MCa LINE L1 -4644 1782 794 1505 182 21 21 chrX 148317919 148318293 -14281637 + L1 LINE L1 4293 4666 -1480 * 1163 158 0 13 chrX 148318295 148318523 -14281407 + L1 LINE L1 4576 4800 -1346 3120 251 66 37 chrX 148318534 148321263 -14278667 - L1M4 LINE L1 -3714 2930 41 25 65 0 0 chrX 148322059 148322105 -14277825 + AT_rich Low_complexity Low_complexity 1 46 0 1815 182 18 32 chrX 148322670 148323050 -14276880 - THE1C LTR MaLR 0 375 1 9351 136 59 7 chrX 148323050 148324551 -14275379 - THE1C-int LTR MaLR 0 1580 1 1890 168 18 37 chrX 148324551 148324933 -14274997 - THE1C LTR MaLR 0 375 1 351 309 207 18 chrX 148325020 148325237 -14274693 + MIR SINE MIR 5 262 0 1515 178 17 48 chrX 148325343 148325636 -14274294 - AluSg SINE Alu -22 288 5 2768 168 71 6 chrX 148325710 148326247 -14273683 + L1PA16 LINE L1 5590 6161 -5 185 382 56 0 chrX 148326540 148326629 -14273301 - MIR3 SINE MIR -111 97 4 329 286 0 0 chrX 148326653 148326730 -14273200 - L2 LINE L2 -6 3307 3231 3828 130 31 5 chrX 148326962 148327569 -14272361 - MER39B LTR ERV1 -28 625 3 202 336 60 22 chrX 148327681 148327815 -14272115 - L3 LINE CR1 -243 1334 1196 315 258 0 82 chrX 148327815 148327912 -14272018 + LTR33 LTR ERVL 9 97 -424 2234 81 34 6 chrX 148327917 148328304 -14271626 - LTR7 LTR ERV1 0 450 3 4099 75 9 12 chrX 148328306 148328865 -14271065 - HERVH LTR ERV1 0 7713 7157 2577 146 7 5 chrX 148328858 148329284 -14270646 - HERVH LTR ERV1 -1697 6016 5590 * 6439 113 3 0 chrX 148329275 148330176 -14269754 - HERVH LTR ERV1 -2564 5149 4246 459 358 52 52 chrX 148330219 148330791 -14269139 - L3 LINE CR1 -378 1199 628 2244 179 84 16 chrX 148330792 148331289 -14268641 + L1MD2 LINE L1 5356 5886 -356 513 90 0 0 chrX 148331295 148331362 -14268568 + MSTB LTR MaLR 1 67 -359 * 1139 129 54 16 chrX 148331350 148331536 -14268394 + MSTB LTR MaLR 233 425 -1 1741 214 82 8 chrX 148331536 148331937 -14267993 + L1MD2 LINE L1 5885 6315 -44 * 3040 207 52 30 chrX 148331936 148332343 -14267587 + L1MA9 LINE L1 5371 5768 -523 363 23 0 0 chrX 148332343 148332387 -14267543 + (TG)n Simple_repeat Simple_repeat 2 45 0 3040 207 52 30 chrX 148332387 148332880 -14267050 + L1MA9 LINE L1 5768 6291 0 317 280 7 7 chrX 148332864 148333007 -14266923 + L1M4 LINE L1 4303 4445 -1701 * 565 275 44 22 chrX 148333426 148333608 -14266322 - MER97a DNA MER1_type? -708 186 1 1950 117 7 14 chrX 148333865 148334188 -14265742 - AluSx SINE Alu 0 322 2 189 0 0 0 chrX 148334409 148334430 -14265500 + (TTCCC)n Simple_repeat Simple_repeat 1 21 0 1270 84 6 12 chrX 148335085 148335252 -14264678 + LTR46 LTR ERV1 1 166 -294 642 130 0 0 chrX 148335252 148335352 -14264578 + LTR46-int LTR ERV1 142 241 -6744 1551 147 40 4 chrX 148335352 148335624 -14264306 + LTR46 LTR ERV1 179 460 0 53651 74 9 6 chrX 148335625 148342592 -14257338 + LTR46-int LTR ERV1 2 6985 0 2986 123 29 2 chrX 148342592 148343040 -14256890 + LTR46 LTR ERV1 1 460 0 27 73 0 0 chrX 148343637 148343692 -14256238 + AT_rich Low_complexity Low_complexity 1 55 0 1261 210 64 93 chrX 148344065 148344655 -14255275 + L1M4 LINE L1 4115 4687 -1459 656 218 20 50 chrX 148344653 148344855 -14255075 + L1MD2 LINE L1 6163 6358 -1 * 232 385 42 21 chrX 148345019 148345307 -14254623 - L3 LINE CR1 -1070 507 214 243 0 0 0 chrX 148345311 148345338 -14254592 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 210 266 16 0 chrX 148346150 148346214 -14253716 + (CTA)n Simple_repeat Simple_repeat 1 65 0 182 257 0 0 chrX 148346234 148346269 -14253661 - MIR SINE MIR -21 241 207 723 279 108 55 chrX 148346283 148346753 -14253177 - LTR33 LTR ERVL -24 497 3 307 296 0 11 chrX 148346760 148346848 -14253082 - MIR SINE MIR -77 185 99 211 349 0 0 chrX 148346913 148346979 -14252951 + MIR3 SINE MIR 89 154 -54 1820 167 7 3 chrX 148347013 148347313 -14252617 + AluSx SINE Alu 1 301 -11 8059 28 0 0 chrX 148347367 148348479 -14251451 - L1PA4 LINE L1 -3 6152 5042 218 279 16 0 chrX 148348721 148348782 -14251148 - L2 LINE L2 -10 3303 3242 18469 178 41 14 chrX 148348998 148354850 -14245080 - L1MA1 LINE L1 0 7721 2027 540 0 0 0 chrX 148354850 148354910 -14245020 + (TC)n Simple_repeat Simple_repeat 1 60 0 18469 178 41 14 chrX 148354910 148356444 -14243486 - L1MA1 LINE L1 -5694 2027 125 2617 42 0 3 chrX 148356444 148356750 -14243180 - AluY SINE Alu -6 305 1 18469 178 41 14 chrX 148356750 148356867 -14243063 - L1MA1 LINE L1 -7596 125 13 284 314 0 32 chrX 148359291 148359415 -14240515 - MIR SINE MIR -137 125 6 283 239 65 11 chrX 148359706 148359798 -14240132 + MIR SINE MIR 36 132 -76 271 250 118 37 chrX 148360513 148360649 -14239281 - MIR SINE MIR -13 249 103 12577 233 28 28 chrX 148360978 148363128 -14236802 + L1PB3 LINE L1 1 2149 -4700 2555 43 0 7 chrX 148363128 148363459 -14236471 + AluY SINE Alu 1 329 0 12577 233 28 28 chrX 148363459 148363577 -14236353 + L1PB3 LINE L1 2149 2265 -4584 3289 137 30 0 chrX 148363577 148364075 -14235855 + MER75 DNA T2_type 1 513 -1 12577 233 28 28 chrX 148364075 148366293 -14233637 + L1PB3 LINE L1 2265 4481 -2368 2165 131 7 0 chrX 148366293 148366591 -14233339 + AluSq SINE Alu 1 300 -13 12577 233 28 28 chrX 148366591 148366720 -14233210 + L1PB3 LINE L1 4481 4608 -2241 1992 149 3 0 chrX 148366720 148367016 -14232914 + AluSx SINE Alu 1 297 -15 12577 233 28 28 chrX 148367016 148369387 -14230543 + L1PB3 LINE L1 4608 6072 -777 817 223 0 0 chrX 148369388 148369536 -14230394 + AluJo SINE Alu 3 150 -162 734 196 14 36 chrX 148369601 148369739 -14230191 + AluJo SINE Alu 154 288 -24 4890 134 8 26 chrX 148369744 148369793 -14230137 + L1PB3 LINE L1 6063 6111 -746 2256 148 117 5 chrX 148369793 148370178 -14229752 - MSTA LTR MaLR 0 428 1 8510 156 60 40 chrX 148370178 148371725 -14228205 - MSTA-int LTR MaLR 0 1580 3 2261 166 83 8 chrX 148371727 148372125 -14227805 - MSTA LTR MaLR 0 428 1 4890 134 8 26 chrX 148372125 148372876 -14227054 + L1PB3 LINE L1 6111 6852 -5 2248 113 7 0 chrX 148372904 148373204 -14226726 - AluSc SINE Alu -7 302 1 26 0 0 0 chrX 148373970 148373996 -14225934 + AT_rich Low_complexity Low_complexity 1 26 0 1415 201 26 87 chrX 148374050 148374439 -14225491 - MLT1A1 LTR MaLR 0 365 1 373 189 98 118 chrX 148374551 148374704 -14225226 + Charlie8 DNA MER1_type 33 182 -2235 289 338 32 45 chrX 148374934 148375088 -14224842 - MIR3 SINE MIR -54 154 3 960 270 18 12 chrX 148375800 148376126 -14223804 + L1ME1 LINE L1 4812 5139 -1007 2286 146 88 13 chrX 148376132 148376530 -14223400 + MSTA LTR MaLR 1 428 0 8900 189 25 2 chrX 148376534 148378145 -14221785 + MSTA-int LTR MaLR 5 1651 0 2024 137 124 16 chrX 148378145 148378343 -14221587 + MSTA LTR MaLR 1 176 -252 186 43 0 0 chrX 148378343 148378366 -14221564 + (TC)n Simple_repeat Simple_repeat 1 23 0 2024 137 124 16 chrX 148378366 148378553 -14221377 + MSTA LTR MaLR 176 428 0 1881 233 71 56 chrX 148378684 148379555 -14220375 + L1ME1 LINE L1 5268 6151 -15 263 306 74 19 chrX 148379650 148379758 -14220172 + L2 LINE L2 3200 3313 0 281 336 121 34 chrX 148379956 148380337 -14219593 - L2 LINE L2 -939 2375 1962 1327 81 0 0 chrX 148380387 148380561 -14219369 + L1PA7 LINE L1 5979 6152 -2 242 308 12 64 chrX 148381378 148381550 -14218380 + L2 LINE L2 2896 3058 -214 851 228 52 20 chrX 148381665 148381825 -14218105 - MLT1B LTR MaLR -132 258 86 1568 163 111 13 chrX 148381825 148382132 -14217798 + MER1B DNA MER1_type 1 337 0 851 228 52 20 chrX 148382132 148382221 -14217709 - MLT1B LTR MaLR -304 86 1 1261 105 145 0 chrX 148382231 148382431 -14217499 + MER30 DNA MER1_type 1 229 -1 551 205 60 54 chrX 148382797 148382963 -14216967 + MIR SINE MIR 86 252 -10 2305 76 6 58 chrX 148383168 148383496 -14216434 + AluSp SINE Alu 1 311 -2 241 327 0 40 chrX 148384714 148384815 -14215115 + MIR SINE MIR 35 131 -77 416 110 0 14 chrX 148384892 148384965 -14214965 + (TC)n Simple_repeat Simple_repeat 1 72 0 209 159 23 23 chrX 148384978 148385022 -14214908 + L2 LINE L2 3267 3310 -3 399 309 42 24 chrX 148385689 148385857 -14214073 + L1ME LINE L1 5599 5769 -352 270 262 117 10 chrX 148385865 148385968 -14213962 + MIR SINE MIR 93 206 -56 257 250 0 0 chrX 148386329 148386381 -14213549 - MIR SINE MIR -110 152 101 189 0 0 0 chrX 148386575 148386596 -14213334 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 221 28 83 0 chrX 148386648 148386684 -14213246 + T-rich Low_complexity Low_complexity 2 40 0 537 0 0 0 chrX 148386703 148386767 -14213163 - L1PA3 LINE L1 -5 6150 6087 556 27 0 0 chrX 148386787 148386860 -14213070 - L1PA3 LINE L1 0 6155 6083 4993 172 10 24 chrX 148387191 148391979 -14207951 + L1PA10 LINE L1 1270 6869 -737 2163 144 8 44 chrX 148391979 148392367 -14207563 - THE1C LTR MaLR -1 374 1 4993 172 10 24 chrX 148392367 148393085 -14206845 + L1PA10 LINE L1 6869 7595 -11 304 224 13 0 chrX 148393816 148393892 -14206038 - LTR16A LTR ERVL -5 445 369 203 188 0 16 chrX 148393954 148394018 -14205912 + (CCA)n Simple_repeat Simple_repeat 2 64 0 606 215 8 127 chrX 148394229 148394489 -14205441 + MER57A LTR ERV1 3 231 -172 285 185 0 0 chrX 148394640 148394694 -14205236 + MER92C LTR ERV1 496 549 -5 395 311 45 67 chrX 148394709 148395021 -14204909 - LTR16A LTR ERVL -87 363 59 196 268 0 0 chrX 148395523 148395564 -14204366 - L2 LINE L2 -12 3260 3220 402 314 180 0 chrX 148396307 148396501 -14203429 - MIR SINE MIR -21 241 13 225 0 0 0 chrX 148396896 148396921 -14203009 + (T)n Simple_repeat Simple_repeat 1 25 0 356 240 67 13 chrX 148397241 148397366 -14202564 + MIR SINE MIR 25 156 -65 336 329 130 10 chrX 148397451 148397658 -14202272 + L2 LINE L2 1788 2019 -1295 498 284 59 28 chrX 148397662 148397891 -14202039 - MIR SINE MIR -7 255 15 2022 143 7 3 chrX 148397927 148398227 -14201703 - AluSx SINE Alu -11 301 1 498 311 11 44 chrX 148398354 148398534 -14201396 - MIR SINE MIR -86 176 3 22 0 0 0 chrX 148399300 148399322 -14200608 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chrX 148399904 148399939 -14199991 + AT_rich Low_complexity Low_complexity 1 35 0 7582 27 0 0 chrX 148399944 148401449 -14198481 - L1PA4 LINE L1 -6 6149 4645 219 325 112 47 chrX 148401495 148401664 -14198266 - MER5A DNA MER1_type 0 189 10 500 255 25 31 chrX 148401739 148401900 -14198030 + MIR SINE MIR 33 192 -70 2145 123 0 0 chrX 148401906 148402191 -14197739 + AluSx SINE Alu 1 285 -27 279 0 0 0 chrX 148402191 148402222 -14197708 + (CA)n Simple_repeat Simple_repeat 2 32 0 412 234 65 16 chrX 148402242 148402366 -14197564 + MLT1J2 LTR MaLR 2 131 -319 341 235 17 41 chrX 148402486 148402611 -14197319 + MLT1I LTR MaLR 278 427 -19 1857 174 43 33 chrX 148403088 148403634 -14196296 - MLT2A2 LTR ERVL 0 554 1 238 278 211 11 chrX 148403923 148404013 -14195917 + L2 LINE L2 3161 3268 -4 1926 141 12 13 chrX 148404083 148404557 -14195373 - L1M1 LINE L1 -708 5594 5119 * 4686 202 162 11 chrX 148404555 148405764 -14194166 - L1M1 LINE L1 -6165 1400 9 214 218 0 18 chrX 148405825 148405880 -14194050 + (TTATA)n Simple_repeat Simple_repeat 2 55 0 2288 139 114 66 chrX 148405890 148406435 -14193495 - LTR4 LTR ERV1 0 596 26 183 162 0 0 chrX 148406468 148406505 -14193425 + (AATTG)n Simple_repeat Simple_repeat 2 38 0 439 287 115 23 chrX 148406518 148406692 -14193238 - MIR3 SINE MIR 0 208 19 191 277 112 95 chrX 148407906 148408148 -14191782 - L2 LINE L2 -7 3265 3020 524 329 24 82 chrX 148408302 148408727 -14191203 - L2 LINE L2 -446 2868 2469 180 333 50 0 chrX 148408873 148408933 -14190997 + L2 LINE L2 3201 3263 -50 3744 255 34 67 chrX 148409036 148410674 -14189256 - L2 LINE L2 -1 3312 1720 192 276 190 0 chrX 148410675 148410733 -14189197 - L2 LINE L2 -498 2816 2748 286 319 147 34 chrX 148410741 148411033 -14188897 - L2 LINE L2 -1172 2142 1818 309 26 0 0 chrX 148411091 148411129 -14188801 + (TG)n Simple_repeat Simple_repeat 2 39 0 4390 123 24 72 chrX 148411968 148412786 -14187144 - MER4E LTR ERV1 0 779 1 1693 117 6 80 chrX 148412859 148413210 -14186720 + MER4A LTR ERV1 1 325 -339 2059 155 25 36 chrX 148413222 148413777 -14186153 - LTR10E LTR ERV1 0 602 1 549 129 212 23 chrX 148413877 148414009 -14185921 + MER4C LTR ERV1 299 455 -10 508 316 12 12 chrX 148414009 148414177 -14185753 - MIR SINE MIR -93 169 2 2103 85 233 136 chrX 148414202 148414730 -14185200 - LTR12 LTR ERV1 -134 580 2 186 233 0 0 chrX 148414745 148414788 -14185142 - MIR SINE MIR -109 153 111 374 266 0 0 chrX 148414978 148415087 -14184843 + MER103 DNA DNA 12 120 -46 351 0 0 0 chrX 148416114 148416153 -14183777 + (CA)n Simple_repeat Simple_repeat 2 40 0 226 179 0 0 chrX 148416185 148416224 -14183706 - MIR3 SINE MIR 0 208 170 1807 130 6 37 chrX 148416228 148416550 -14183380 + LTR8 LTR ERV1 1 312 -379 3150 155 65 2 chrX 148416583 148417156 -14182774 + MER50 LTR ERV1 1 609 -125 4187 158 11 3 chrX 148417159 148417874 -14182056 - MER50 LTR ERV1 -12 722 2 2250 150 5 13 chrX 148417875 148418256 -14181674 + LTR8 LTR ERV1 314 691 0 197 304 18 18 chrX 148418384 148418440 -14181490 + MIR SINE MIR 20 75 -187 259 203 62 0 chrX 148418447 148418511 -14181419 - MLT1I LTR MaLR -2 407 340 388 264 19 9 chrX 148418741 148418847 -14181083 - MLT1I LTR MaLR -302 107 1 219 385 59 0 chrX 148418877 148419012 -14180918 + MIR SINE MIR 102 244 -18 819 282 15 19 chrX 148419074 148419340 -14180590 - L3 LINE CR1 -284 1293 1029 3316 72 30 0 chrX 148419381 148419812 -14180118 - MLT2A1 LTR ERVL 0 444 1 297 326 38 30 chrX 148420151 148420283 -14179647 + MER5A DNA MER1_type 39 171 -18 246 62 0 0 chrX 148420420 148420452 -14179478 + (TA)n Simple_repeat Simple_repeat 2 33 0 183 42 0 0 chrX 148420581 148420605 -14179325 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 274 303 14 7 chrX 148421761 148421903 -14178027 - MER103 DNA DNA -9 157 15 524 292 69 15 chrX 148422552 148422754 -14177176 + MIR SINE MIR 38 250 -12 205 352 44 0 chrX 148423455 148423546 -14176384 + MIR SINE MIR 53 147 -115 538 311 61 33 chrX 148423762 148424157 -14175773 + L1MC/D LINE L1 5414 5819 -302 579 289 88 21 chrX 148424207 148424446 -14175484 - MIR SINE MIR -5 257 3 29 47 0 0 chrX 148424932 148424975 -14174955 + AT_rich Low_complexity Low_complexity 1 43 0 6700 179 15 33 chrX 148424989 148425381 -14174549 + L1MB1 LINE L1 3730 4128 -2040 1798 194 52 26 chrX 148425381 148425763 -14174167 + MSTD LTR MaLR 3 394 -2 6700 179 15 33 chrX 148425763 148427817 -14172113 + L1MB1 LINE L1 4128 6125 -43 309 130 0 0 chrX 148428133 148428187 -14171743 + L1MB1 LINE L1 6114 6167 -1 2083 134 32 24 chrX 148430413 148430785 -14169145 + THE1C LTR MaLR 1 375 0 8782 140 37 34 chrX 148430787 148432361 -14167569 + THE1C-int LTR MaLR 3 1580 0 1824 177 35 16 chrX 148432361 148432729 -14167201 + THE1C LTR MaLR 1 375 0 1772 219 35 96 chrX 148433420 148433602 -14166328 - MER92B LTR ERV1 0 636 445 2160 121 0 34 chrX 148433602 148433925 -14166005 - AluSx SINE Alu 0 312 1 1772 219 35 96 chrX 148433925 148433995 -14165935 - MER92B LTR ERV1 -191 445 372 2335 107 0 0 chrX 148433995 148434303 -14165627 + AluSg SINE Alu 1 308 -2 1772 219 35 96 chrX 148434303 148434726 -14165204 - MER92B LTR ERV1 -264 372 1 1343 312 81 28 chrX 148435011 148435230 -14164700 - L2 LINE L2 0 3313 3107 2232 110 0 3 chrX 148435230 148435539 -14164391 - AluSc SINE Alu -1 308 1 1343 312 81 28 chrX 148435539 148436104 -14163826 - L2 LINE L2 -206 3107 2495 1366 250 44 23 chrX 148436104 148436492 -14163438 + MSTD LTR MaLR 1 396 0 3011 83 39 14 chrX 148436617 148437050 -14162880 + MLT2A1 LTR ERVL 1 444 0 428 316 48 31 chrX 148438429 148438657 -14161273 + L2 LINE L2 2620 2851 -463 525 388 62 13 chrX 148438670 148438979 -14160951 - L2 LINE L2 0 3272 2949 216 272 22 147 chrX 148439149 148439285 -14160645 + MIR SINE MIR 20 138 -124 4294 189 33 22 chrX 148439285 148440542 -14159388 + L1MA9 LINE L1 4999 6271 -41 200 231 0 0 chrX 148440615 148440654 -14159276 + MIR SINE MIR 205 243 -19 256 325 71 19 chrX 148440674 148440886 -14159044 - L2 LINE L2 -821 2493 2271 569 320 80 49 chrX 148440891 148441279 -14158651 + L2 LINE L2 2869 3268 -4 282 326 43 21 chrX 148441825 148441966 -14157964 + L2 LINE L2 1959 2102 -1212 489 274 27 14 chrX 148441988 148442134 -14157796 - MER5A DNA MER1_type -7 182 35 741 307 99 66 chrX 148442219 148442381 -14157549 + L2 LINE L2 2182 2337 -977 1974 130 7 3 chrX 148442381 148442704 -14157226 - AluSx SINE Alu 0 324 1 741 307 99 66 chrX 148442704 148443158 -14156772 + L2 LINE L2 2337 2819 -495 739 281 18 22 chrX 148443159 148443383 -14156547 + MER58A DNA MER1_type 2 224 0 214 281 23 62 chrX 148443445 148443573 -14156357 + L2 LINE L2 2938 3060 -212 2525 46 3 0 chrX 148443815 148444118 -14155812 - AluY SINE Alu -7 304 1 21 57 0 0 chrX 148444816 148444851 -14155079 + AT_rich Low_complexity Low_complexity 1 35 0 490 310 48 41 chrX 148445456 148445727 -14154203 - L3 LINE CR1 -19 1558 1286 372 258 62 23 chrX 148445742 148445870 -14154060 + MIR3 SINE MIR 33 165 -43 21 0 0 0 chrX 148447284 148447305 -14152625 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 148448834 148448855 -14151075 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chrX 148449148 148449177 -14150753 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chrX 148449272 148449300 -14150630 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chrX 148450624 148450652 -14149278 + AT_rich Low_complexity Low_complexity 1 28 0 246 176 0 0 chrX 148452216 148452267 -14147663 + (CA)n Simple_repeat Simple_repeat 1 51 0 260 233 14 0 chrX 148452489 148452562 -14147368 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 234 209 47 0 chrX 148452562 148452648 -14147282 - L1MC4 LINE L1 -1339 6703 6614 423 0 0 0 chrX 148453802 148453849 -14146081 + (T)n Simple_repeat Simple_repeat 1 47 0 183 42 0 0 chrX 148460475 148460499 -14139431 + (TC)n Simple_repeat Simple_repeat 1 24 0 189 147 0 0 chrX 148460732 148460766 -14139164 + (CGGG)n Simple_repeat Simple_repeat 4 37 0 468 0 0 0 chrX 148461202 148461254 -14138676 + (CA)n Simple_repeat Simple_repeat 2 53 0 249 33 0 0 chrX 148461827 148461857 -14138073 + (A)n Simple_repeat Simple_repeat 1 30 0 2183 131 0 0 chrX 148464623 148464935 -14134995 - AluSx SINE Alu 0 312 1 316 299 6 30 chrX 148465009 148465176 -14134754 + MER103 DNA DNA 3 165 -1 384 304 145 15 chrX 148465284 148465403 -14134527 - MIR SINE MIR 0 262 160 1630 190 4 0 chrX 148465403 148465682 -14134248 + AluJb SINE Alu 1 280 -32 315 0 0 0 chrX 148465682 148465717 -14134213 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 384 304 145 15 chrX 148465717 148465804 -14134126 - MIR SINE MIR -101 161 32 1260 178 115 22 chrX 148465871 148466141 -14133789 + AluJb SINE Alu 1 295 -17 306 22 152 0 chrX 148466447 148466493 -14133437 - MLT2A2 LTR ERVL 0 453 392 371 119 15 0 chrX 148466514 148466581 -14133349 + (TA)n Simple_repeat Simple_repeat 2 69 0 2729 102 30 0 chrX 148466581 148466982 -14132948 - MLT2A2 LTR ERVL -40 413 1 1874 51 16 12 chrX 148467827 148468081 -14131849 + L1MA1 LINE L1 6048 6302 0 326 257 193 0 chrX 148468532 148468641 -14131289 - L3 LINE CR1 -18 1559 1430 447 287 84 50 chrX 148468744 148468946 -14130984 + MIR SINE MIR 16 224 -38 1709 51 0 0 chrX 148469640 148469854 -14130076 - L1PA4 LINE L1 -3 6152 5939 214 224 0 35 chrX 148471723 148471781 -14128149 + (CTATA)n Simple_repeat Simple_repeat 5 60 0 1328 135 10 0 chrX 148472257 148472465 -14127465 + MER2 DNA MER2_type 1 210 -135 5287 80 22 0 chrX 148472502 148473214 -14126716 - L1PA10 LINE L1 -8 6160 5433 189 229 160 61 chrX 148474258 148474389 -14125541 - MIR SINE MIR -47 215 72 767 234 149 12 chrX 148474551 148474799 -14125131 - LTR50 LTR ERVL -506 289 8 299 308 122 30 chrX 148475169 148475530 -14124400 - ERVL LTR ERVL -326 5438 5045 21 0 0 0 chrX 148475754 148475775 -14124155 + AT_rich Low_complexity Low_complexity 1 21 0 369 288 51 17 chrX 148476199 148476317 -14123613 - L2 LINE L2 -1 3312 3191 2136 109 0 0 chrX 148476495 148476799 -14123131 + AluSx SINE Alu 1 304 0 641 236 14 14 chrX 148477289 148477437 -14122493 - MIR SINE MIR -34 228 81 724 302 157 18 chrX 148477522 148477853 -14122077 + L3 LINE CR1 918 1294 -283 1457 154 69 20 chrX 148478243 148478549 -14121381 - L1MC1 LINE L1 0 6333 6013 1430 78 47 0 chrX 148478548 148478740 -14121190 + L1PA8 LINE L1 5948 6172 0 196 42 0 0 chrX 148478740 148478764 -14121166 + (TAAAA)n Simple_repeat Simple_repeat 1 115 0 708 274 75 5 chrX 148478778 148478990 -14120940 + MIR SINE MIR 36 262 0 536 92 64 29 chrX 148479194 148479367 -14120563 + (TA)n Simple_repeat Simple_repeat 2 180 0 240 129 102 0 chrX 148479408 148479555 -14120375 + (TA)n Simple_repeat Simple_repeat 2 163 0 427 88 88 19 chrX 148479570 148479730 -14120200 + (TA)n Simple_repeat Simple_repeat 2 172 0 712 132 42 19 chrX 148479760 148480072 -14119858 + (TA)n Simple_repeat Simple_repeat 1 319 0 303 283 33 42 chrX 148480913 148481033 -14118897 + L2 LINE L2 3195 3313 0 450 329 111 9 chrX 148481496 148481721 -14118209 + MIR SINE MIR 9 256 -6 4283 204 27 19 chrX 148482931 148483682 -14116248 + L1MB2 LINE L1 4617 5360 -811 2326 93 3 0 chrX 148483682 148483983 -14115947 + AluSp SINE Alu 1 302 -11 4283 204 27 19 chrX 148483983 148484772 -14115158 + L1MB2 LINE L1 5360 6169 -2 231 36 0 0 chrX 148484801 148484829 -14115101 + (CA)n Simple_repeat Simple_repeat 1 28 0 5973 167 7 6 chrX 148486405 148487940 -14111990 - L1MA8 LINE L1 -5 6286 4750 2685 149 2 13 chrX 148487910 148488380 -14111550 - L1MA8 LINE L1 -2020 4126 3662 * 237 95 0 0 chrX 148489036 148489078 -14110852 - LTR66 LTR ERVL -175 435 394 262 245 59 20 chrX 148490179 148490281 -14109649 - MIR SINE MIR -8 254 149 302 349 41 41 chrX 148490452 148490624 -14109306 - L2 LINE L2 -210 3062 2891 3538 148 42 100 chrX 148491411 148491554 -14108376 - L1MA4A LINE L1 -5 6298 6148 2329 103 0 3 chrX 148491554 148491866 -14108064 - AluY SINE Alu 0 311 1 3538 148 42 100 chrX 148491866 148492579 -14107351 - L1MA4A LINE L1 -155 6148 5492 1803 263 206 14 chrX 148492728 148492891 -14107039 - L1M2 LINE L1 -6063 786 656 207 0 0 0 chrX 148492891 148492914 -14107016 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1803 263 206 14 chrX 148492914 148493400 -14106530 - L1M2 LINE L1 -6193 656 12 225 359 10 29 chrX 148493468 148493571 -14106359 - L1MC/D LINE L1 -2158 5650 5550 316 279 73 47 chrX 148493572 148493805 -14106125 - L1MC/D LINE L1 -711 5531 5293 2153 81 0 0 chrX 148494465 148494725 -14105205 - AluSg SINE Alu -13 297 38 1256 131 0 0 chrX 148494878 148495069 -14104861 + L1PA13 LINE L1 5962 6152 -11 321 250 23 78 chrX 148495091 148495219 -14104711 - MIR SINE MIR -46 216 96 237 283 53 9 chrX 148495222 148495335 -14104595 + L1ME4a LINE L1 5991 6108 -13 363 373 59 24 chrX 148495885 148496054 -14103876 - L2 LINE L2 -1 3271 3097 237 333 0 0 chrX 148496180 148496237 -14103693 + L2 LINE L2 3150 3206 -66 494 210 216 6 chrX 148496305 148496481 -14103449 + MER58C DNA MER1_type 1 213 -2 317 253 0 27 chrX 148496736 148496811 -14103119 + L2 LINE L2 3200 3272 0 240 35 0 0 chrX 148496996 148497025 -14102905 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2179 111 0 7 chrX 148497071 148497378 -14102552 + AluSx SINE Alu 1 305 -7 609 110 10 20 chrX 148499527 148499627 -14100303 - L1PA11 LINE L1 -2 6172 6074 580 135 0 0 chrX 148499628 148499717 -14100213 + L1P LINE L1 1774 1862 -4284 2073 103 3 3 chrX 148500245 148500592 -14099338 + AluSq SINE Alu 1 347 0 320 299 67 87 chrX 148501120 148501504 -14098426 - L2 LINE L2 -177 3095 2698 529 191 0 38 chrX 148501504 148501609 -14098321 - MER58C DNA MER1_type 0 215 115 364 316 4 0 chrX 148501631 148501777 -14098153 - MER58 DNA MER1_type -65 150 3 2449 34 0 14 chrX 148502280 148502574 -14097356 - AluY SINE Alu -10 301 12 6010 109 5 0 chrX 148502602 148504008 -14095922 - L1PA14 LINE L1 0 6161 4749 298 250 175 19 chrX 148505168 148505328 -14094602 - L1ME3A LINE L1 -202 5968 5784 256 246 33 0 chrX 148505328 148505389 -14094541 + GA-rich Low_complexity Low_complexity 5 67 0 846 292 70 33 chrX 148505390 148505973 -14093957 - L1ME3A LINE L1 -1817 4329 3725 1141 182 16 0 chrX 148505996 148506188 -14093742 - AluJb SINE Alu -115 197 3 22 0 0 0 chrX 148506196 148506218 -14093712 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 148506236 148506258 -14093672 + AT_rich Low_complexity Low_complexity 1 22 0 1560 213 35 5 chrX 148506301 148506920 -14093010 - L1M4 LINE L1 -605 5579 4942 545 265 48 14 chrX 148506922 148507069 -14092861 - MLT1G1 LTR MaLR -440 155 4 21 0 0 0 chrX 148507684 148507705 -14092225 + AT_rich Low_complexity Low_complexity 1 21 0 732 178 30 77 chrX 148507807 148507924 -14092006 - Tigger1 DNA MER2_type 0 2418 2310 2281 99 3 0 chrX 148507924 148508218 -14091712 + AluSp SINE Alu 1 295 -18 732 178 30 77 chrX 148508218 148508269 -14091661 - Tigger1 DNA MER2_type -108 2310 2258 * 6653 154 65 7 chrX 148508267 148509413 -14090517 - Tigger1 DNA MER2_type -1206 1212 1 24 32 0 0 chrX 148509588 148509619 -14090311 + AT_rich Low_complexity Low_complexity 1 31 0 3427 207 36 4 chrX 148509741 148510537 -14089393 - L1PA15-16 LINE L1 -2975 3874 3053 360 0 0 0 chrX 148511194 148511234 -14088696 + (CA)n Simple_repeat Simple_repeat 2 41 0 250 281 45 77 chrX 148511234 148511539 -14088391 - L1ME4a LINE L1 -186 5935 5639 2308 188 7 92 chrX 148511768 148512193 -14087737 - L1PA15-16 LINE L1 -3819 3030 2570 2147 120 3 0 chrX 148512193 148512484 -14087446 - AluSp SINE Alu -17 296 5 2308 188 7 92 chrX 148512484 148512563 -14087367 - L1PA15-16 LINE L1 -4279 2570 2486 2418 84 3 0 chrX 148512563 148512872 -14087058 + AluY SINE Alu 1 310 -1 2308 188 7 92 chrX 148512872 148513078 -14086852 - L1PA15-16 LINE L1 -4363 2486 2374 715 109 0 0 chrX 148513091 148513201 -14086729 - L1PB1 LINE L1 0 6151 6042 391 260 73 33 chrX 148513589 148513739 -14086191 + MER20B DNA MER1_type 2 157 -626 977 330 62 20 chrX 148514621 148515075 -14084855 - L2 LINE L2 -808 2506 2034 760 200 55 5 chrX 148516664 148516864 -14083066 - L1M4 LINE L1 -1082 5064 4855 * 973 206 4 45 chrX 148516860 148517103 -14082827 + L1MB8 LINE L1 5945 6177 -1 695 235 51 31 chrX 148517484 148517680 -14082250 - MIR SINE MIR -58 204 5 740 291 140 19 chrX 148517928 148518341 -14081589 + LTR33 LTR ERVL 25 487 -34 190 318 149 28 chrX 148518411 148518518 -14081412 - MIR3 SINE MIR -76 132 13 725 297 84 13 chrX 148518694 148518933 -14080997 + MIR SINE MIR 4 259 -3 395 322 27 27 chrX 148519368 148519551 -14080379 + MIR3 SINE MIR 16 198 -10 181 364 0 0 chrX 148519655 148519732 -14080198 + MIR SINE MIR 63 139 -123 608 261 84 26 chrX 148520219 148520445 -14079485 - L1ME1 LINE L1 -6 6160 5922 2006 172 28 34 chrX 148520450 148520915 -14079015 - L1MA7 LINE L1 -2 6289 5828 4412 157 17 14 chrX 148520915 148521539 -14078391 + L1PB4 LINE L1 5388 6009 -147 1940 201 68 0 chrX 148521539 148521938 -14077992 + MSTA LTR MaLR 1 426 -2 8328 188 30 8 chrX 148521940 148523555 -14076375 + MSTA-int LTR MaLR 1 1651 0 1952 190 70 0 chrX 148523555 148523955 -14075975 + MSTA LTR MaLR 1 428 0 4412 157 17 14 chrX 148523955 148524091 -14075839 + L1PB4 LINE L1 6008 6154 -2 2839 197 16 13 chrX 148524081 148524855 -14075075 - L1MA7 LINE L1 -452 5839 5065 * 2108 127 0 3 chrX 148524855 148525154 -14074776 - AluSq SINE Alu -15 298 1 2839 197 16 13 chrX 148525154 148525220 -14074710 - L1MA7 LINE L1 -1226 5065 5001 1424 107 31 0 chrX 148525217 148525442 -14074488 - L1PA12 LINE L1 -346 5822 5591 * 2031 134 3 12 chrX 148525442 148525768 -14074162 + L1PA12 LINE L1 5826 6150 -18 1667 175 52 6 chrX 148525778 148525986 -14073944 - L1MA7 LINE L1 -1137 5009 4777 240 35 0 0 chrX 148525986 148526015 -14073915 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1667 175 52 6 chrX 148526015 148526154 -14073776 - L1MA7 LINE L1 -1369 4777 4646 3130 188 79 191 chrX 148526164 148527620 -14072310 + MER52A LTR ERV1 1 1278 0 1709 202 46 0 chrX 148527624 148528034 -14071896 - L1MA7 LINE L1 -1511 4635 4207 685 245 19 0 chrX 148528072 148528231 -14071699 + MSTD LTR MaLR 235 396 0 23 54 0 0 chrX 148528243 148528280 -14071650 + AT_rich Low_complexity Low_complexity 1 37 0 341 292 35 18 chrX 148528359 148528472 -14071458 - L2 LINE L2 -4 3309 3195 334 245 205 66 chrX 148528713 148528864 -14071066 - MIR SINE MIR -21 241 70 643 180 8 8 chrX 148529568 148529690 -14070240 - THE1C LTR MaLR 0 375 254 2700 150 106 54 chrX 148529702 148530277 -14069653 - THE1-int LTR MaLR -654 926 322 1293 225 124 11 chrX 148530268 148530472 -14069458 + L1MD2 LINE L1 5911 6091 -268 * 333 0 0 0 chrX 148530472 148530509 -14069421 + (CA)n Simple_repeat Simple_repeat 2 38 0 1293 225 124 11 chrX 148530509 148530668 -14069262 + L1MD2 LINE L1 6091 6315 -44 376 214 47 27 chrX 148530667 148531071 -14068859 + L1MA8 LINE L1 5371 5766 -525 * 414 0 0 0 chrX 148531071 148531117 -14068813 + (TG)n Simple_repeat Simple_repeat 2 47 0 376 214 47 27 chrX 148531117 148531398 -14068532 + L1MA8 LINE L1 5766 6266 -25 351 251 21 8 chrX 148531394 148531550 -14068380 + L1M4 LINE L1 4284 4445 -1701 * 482 208 45 65 chrX 148531952 148532106 -14067824 - MER97b DNA MER1_type? -857 196 46 2054 115 3 26 chrX 148532375 148532687 -14067243 - AluSx SINE Alu -7 305 1 2889 126 34 2 chrX 148533693 148534139 -14065791 + LTR46 LTR ERV1 1 460 0 54302 72 8 6 chrX 148534139 148534894 -14065036 + LTR46-int LTR ERV1 1 753 -6232 237 33 0 0 chrX 148534894 148534924 -14065006 + (TC)n Simple_repeat Simple_repeat 2 31 0 54302 72 8 6 chrX 148534924 148541135 -14058795 + LTR46-int LTR ERV1 753 6985 0 2828 121 29 2 chrX 148541135 148541583 -14058347 + LTR46 LTR ERV1 1 460 0 550 258 105 0 chrX 148542578 148542787 -14057143 + L1M4 LINE L1 4115 4345 -1801 901 235 30 21 chrX 148542868 148543204 -14056726 + L1M4 LINE L1 4349 4687 -1459 612 213 25 55 chrX 148543202 148543404 -14056526 + L1MD2 LINE L1 6163 6358 -1 * 240 356 64 23 chrX 148543573 148543837 -14056093 - L3 LINE CR1 -1070 507 233 13171 100 7 12 chrX 148544173 148546085 -14053845 + L1P3 LINE L1 2 1915 -4546 6403 118 146 139 chrX 148546088 148547772 -14052158 - pTR5 LTR ERV1 0 2438 744 16567 109 1 3 chrX 148547772 148550183 -14049747 + L1P3 LINE L1 1911 4317 -2144 1958 111 7 7 chrX 148550183 148550460 -14049470 + L1PA8A LINE L1 5853 6131 0 426 245 0 3 chrX 148550468 148550578 -14049352 - L1M4 LINE L1 -1814 4332 4225 278 286 62 43 chrX 148550627 148550788 -14049142 + L1ME4a LINE L1 5528 5691 -430 261 225 25 12 chrX 148551007 148551044 -14048886 + L1ME4a LINE L1 5825 5860 -261 1871 283 52 18 chrX 148551044 148551617 -14048313 + MLT1E LTR MaLR 1 593 0 261 225 25 12 chrX 148551617 148551659 -14048271 + L1ME4a LINE L1 5860 5905 -216 3332 128 9 9 chrX 148601937 148602466 -13997464 + L1PB1 LINE L1 5620 6148 -3 289 96 58 0 chrX 148602469 148602521 -13997409 + L1MA3 LINE L1 6251 6305 0 343 127 73 0 chrX 148602866 148603016 -13996914 + (TA)n Simple_repeat Simple_repeat 1 161 0 277 107 36 36 chrX 148603020 148603076 -13996854 + MLT1H LTR MaLR 494 549 0 1500 67 0 0 chrX 148603288 148603481 -13996449 - L1PA3 LINE L1 0 6155 5963 1238 181 13 4 chrX 148603730 148603968 -13995962 + L1MA2 LINE L1 5503 5742 -558 2774 124 13 17 chrX 148603969 148604276 -13995654 + L1MA2 LINE L1 5833 6139 -165 1710 183 0 16 chrX 148604276 148604593 -13995337 + AluJb SINE Alu 1 312 0 2774 124 13 17 chrX 148604593 148604753 -13995177 + L1MA2 LINE L1 6139 6298 -6 21 0 0 0 chrX 148605105 148605126 -13994804 + AT_rich Low_complexity Low_complexity 1 21 0 258 389 63 24 chrX 148605179 148605431 -13994499 - MIR SINE MIR 0 262 1 515 305 137 10 chrX 148605734 148605931 -13993999 + MIR SINE MIR 32 253 -9 1132 259 21 77 chrX 148606044 148606507 -13993423 + MLT1D LTR MaLR 1 435 -70 2143 71 3 41 chrX 148606507 148606827 -13993103 + AluSq SINE Alu 1 309 0 1132 259 21 77 chrX 148606827 148606893 -13993037 + MLT1D LTR MaLR 435 503 -2 1065 290 130 3 chrX 148608521 148608859 -13991071 + L1M4 LINE L1 11 391 -6468 1304 254 26 18 chrX 148609006 148609502 -13990428 + L1M4 LINE L1 4007 4506 -2451 1352 169 10 24 chrX 148609553 148609843 -13990087 + L1M4 LINE L1 5527 5812 -372 1757 227 53 19 chrX 148609902 148610347 -13989583 + L1M4 LINE L1 2614 3089 -3057 2097 182 19 52 chrX 148610347 148610824 -13989106 - LOR1b LTR ERV1 0 461 1 1757 227 53 19 chrX 148610824 148611025 -13988905 + L1M4 LINE L1 3089 3282 -2864 409 234 50 7 chrX 148611058 148611199 -13988731 + L1M4 LINE L1 3618 3764 -2382 1037 265 73 25 chrX 148611203 148611683 -13988247 - L1 LINE L1 -1545 4601 4099 * 2393 196 38 7 chrX 148611680 148612253 -13987677 + L1MA5 LINE L1 5686 6297 0 4006 185 26 20 chrX 148612257 148613138 -13986792 + L1MA9 LINE L1 5427 6312 0 486 338 112 34 chrX 148613187 148613703 -13986227 + L1M4 LINE L1 3697 4262 -1884 2191 95 3 7 chrX 148613703 148613998 -13985932 - AluSc SINE Alu -15 294 1 486 338 112 34 chrX 148613998 148614044 -13985886 + L1M4 LINE L1 4262 4303 -1843 1740 251 31 0 chrX 148615724 148616111 -13983819 + LTR53 LTR ERVL 103 501 -18 12547 157 47 7 chrX 148616259 148618585 -13981345 + Tigger1 DNA MER2_type 1 2418 0 384 303 35 35 chrX 148618701 148618846 -13981084 + Charlie2 DNA MER1_type 177 321 -2461 251 224 168 9 chrX 148618852 148618959 -13980971 + Charlie2 DNA MER1_type 1856 1979 -883 493 222 80 79 chrX 148618997 148619457 -13980473 + Charlie2 DNA MER1_type 2103 2612 -250 783 323 11 4 chrX 148619556 148619822 -13980108 + ERVL LTR ERVL 4793 5060 -704 23 0 0 0 chrX 148620058 148620081 -13979849 + AT_rich Low_complexity Low_complexity 1 23 0 289 302 94 31 chrX 148620338 148620497 -13979433 + LTR50 LTR ERVL 39 207 -588 291 218 135 15 chrX 148620720 148620853 -13979077 + Charlie2 DNA MER1_type 2649 2797 -65 501 308 32 45 chrX 148621301 148621522 -13978408 - L2 LINE L2 0 3313 3096 472 290 157 4 chrX 148621775 148622023 -13977907 + L1M4 LINE L1 2884 3169 -2977 1279 167 0 16 chrX 148622088 148622333 -13977597 - L1MA6 LINE L1 0 6300 6060 5550 165 44 9 chrX 148622335 148622923 -13977007 + L1PBa LINE L1 1967 2533 -4329 2084 109 0 64 chrX 148622923 148623252 -13976678 + AluSg SINE Alu 3 310 0 5550 165 44 9 chrX 148623252 148624407 -13975523 + L1PBa LINE L1 2533 3766 -3096 1304 237 12 9 chrX 148624413 148624750 -13975180 - L1 LINE L1 -808 5338 5001 * 1512 93 8 21 chrX 148624745 148624981 -13974949 - L1PA12 LINE L1 -345 5823 5591 2117 119 49 0 chrX 148624981 148625306 -13974624 + L1PA12 LINE L1 5826 6168 0 1919 166 14 0 chrX 148625310 148625666 -13974264 - L1 LINE L1 -1140 5006 4646 3411 189 105 175 chrX 148625676 148627071 -13972859 + MER52A LTR ERV1 1 1278 0 1706 213 53 0 chrX 148627075 148627493 -13972437 - L1 LINE L1 -1512 4634 4195 794 208 52 0 chrX 148627496 148627650 -13972280 + MSTD LTR MaLR 235 396 0 341 311 27 137 chrX 148627783 148628082 -13971848 - L2 LINE L2 -4 3268 3003 315 275 201 47 chrX 148628111 148628260 -13971670 - MIR SINE MIR -21 241 70 957 202 28 0 chrX 148628381 148628599 -13971331 + L1 LINE L1 4240 4463 -1683 847 148 89 15 chrX 148629185 148629378 -13970552 - THE1C LTR MaLR 0 375 189 2774 258 38 24 chrX 148629379 148630138 -13969792 - L1M1 LINE L1 -6778 787 18 2486 203 15 0 chrX 148630140 148630682 -13969248 - L1M2 LINE L1 -519 6741 6192 2171 146 122 5 chrX 148630683 148631061 -13968869 + MSTA LTR MaLR 1 422 -6 10193 203 40 26 chrX 148631070 148633679 -13966251 - L1M2 LINE L1 -907 6199 3556 905 243 5 10 chrX 148633696 148633902 -13966028 - L1M2 LINE L1 -6817 213 9 281 314 0 0 chrX 148634017 148634141 -13965789 + L1MC4a LINE L1 3340 3463 -2683 1232 20 0 13 chrX 148634278 148634429 -13965501 + L1PA6 LINE L1 6006 6154 0 599 317 85 41 chrX 148634546 148635630 -13964300 + L1MC4a LINE L1 3634 4766 -1380 2996 154 61 2 chrX 148635630 148636187 -13963743 + L1PA7 LINE L1 5563 6152 -2 15125 147 24 40 chrX 148636198 148638940 -13960990 + Tigger4(Zombi) DNA MER2_type 34 2731 0 2904 159 60 41 chrX 148638940 148639577 -13960353 + L1MA7 LINE L1 5643 6291 0 312 351 49 25 chrX 148639607 148639852 -13960078 + L1MC4a LINE L1 4768 5018 -1128 2961 45 0 0 chrX 148640139 148640497 -13959433 - L1PA3 LINE L1 -3 6152 5795 1134 183 52 8 chrX 148640497 148640735 -13959195 + L1MA7 LINE L1 6024 6285 -6 810 325 62 10 chrX 148640954 148641372 -13958558 + L1MC4a LINE L1 5396 5835 -1973 274 291 116 0 chrX 148641423 148641509 -13958421 + MIR SINE MIR 48 143 -65 1328 237 45 76 chrX 148641997 148642445 -13957485 + MLT1C LTR MaLR 34 467 0 22 35 0 0 chrX 148642703 148642732 -13957198 + AT_rich Low_complexity Low_complexity 1 29 0 241 359 0 11 chrX 148643210 148643302 -13956628 + MIR3 SINE MIR 9 99 -109 2070 131 3 0 chrX 148644069 148644367 -13955563 + AluSx SINE Alu 1 299 -13 6934 153 2 3 chrX 148644818 148645965 -13953965 - L1P LINE L1 -1455 4691 3547 5902 102 39 0 chrX 148645961 148646896 -13953034 + L1PA10 LINE L1 5178 6148 -20 * 529 93 9 19 chrX 148646896 148647004 -13952926 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 4321 110 57 0 chrX 148647004 148647659 -13952271 + L1PA11 LINE L1 5481 6172 -2 326 357 38 87 chrX 148647921 148648268 -13951662 + L2 LINE L2 2929 3258 -14 5876 107 8 9 chrX 148648984 148650649 -13949281 - L1PA14 LINE L1 -9 6152 4488 906 161 13 0 chrX 148650650 148650799 -13949131 - MER57A LTR ERV1 -86 317 167 252 174 0 0 chrX 148650804 148650850 -13949080 + MER34C LTR ERV1 170 215 -370 408 208 45 15 chrX 148651018 148651151 -13948779 + MER57A-int LTR ERV1 1096 1190 -3681 489 206 12 5 chrX 148651236 148651410 -13948520 + MER57A-int LTR ERV1 3080 3338 -2993 348 271 0 0 chrX 148651484 148651569 -13948361 + MER57A-int LTR ERV1 3365 3449 -2882 540 233 86 37 chrX 148651636 148652052 -13947878 + MER57A-int LTR ERV1 1707 2192 -2931 2034 101 0 4 chrX 148652102 148652379 -13947551 + AluSq SINE Alu 37 312 -1 16376 145 22 26 chrX 148652476 148653791 -13946139 + MER57A-int LTR ERV1 4301 5620 -1917 405 0 0 0 chrX 148653791 148653836 -13946094 + (TG)n Simple_repeat Simple_repeat 2 46 0 16376 145 22 26 chrX 148653836 148655387 -13944543 + MER57A-int LTR ERV1 5620 7155 -382 700 101 25 34 chrX 148655389 148655508 -13944422 + LTR54B LTR ERV1 14 131 -367 1732 125 12 0 chrX 148655508 148655764 -13944166 + MER57A-int LTR ERV1 7279 7537 0 1845 214 8 2 chrX 148655768 148656165 -13943765 + MER57A LTR ERV1 5 403 0 28 0 0 0 chrX 148657944 148657972 -13941958 + AT_rich Low_complexity Low_complexity 1 28 0 377 286 83 26 chrX 148657989 148658328 -13941602 + L1M4 LINE L1 2133 2490 -3656 3308 235 104 117 chrX 148658344 148659975 -13939955 + L1MCa LINE L1 21 1672 -4754 2280 80 0 45 chrX 148659975 148660289 -13939641 + AluSx SINE Alu 1 300 -12 194 61 0 30 chrX 148660296 148660329 -13939601 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 3308 235 104 117 chrX 148660329 148661469 -13938461 + L1MCa LINE L1 1678 2773 -3653 1522 269 39 82 chrX 148661479 148662147 -13937783 + L1M4 LINE L1 10 648 -6382 404 292 22 32 chrX 148662191 148662376 -13937554 + L1M4 LINE L1 1816 1998 -5032 5399 163 36 20 chrX 148662381 148662992 -13936938 + L1MA9 LINE L1 4994 5594 -718 243 0 0 0 chrX 148662992 148663019 -13936911 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 405 0 0 0 chrX 148663018 148663063 -13936867 + (TA)n Simple_repeat Simple_repeat 1 45 0 5399 163 36 20 chrX 148663019 148663204 -13936726 + L1MA9 LINE L1 5594 5775 -537 2000 156 16 38 chrX 148663204 148663576 -13936354 + THE1B LTR MaLR 1 364 0 11685 90 2 4 chrX 148663576 148665158 -13934772 + THE1B-int LTR MaLR 1 1580 0 2080 127 21 58 chrX 148665158 148665536 -13934394 + THE1B LTR MaLR 1 364 0 5399 163 36 20 chrX 148665536 148666076 -13933854 + L1MA9 LINE L1 5774 6311 -1 2522 34 3 0 chrX 148666100 148666392 -13933538 - AluY SINE Alu -17 294 2 257 287 19 19 chrX 148666937 148667045 -13932885 + L1ME LINE L1 4881 4988 -1158 23 0 0 0 chrX 148667274 148667297 -13932633 + AT_rich Low_complexity Low_complexity 1 23 0 268 305 0 11 chrX 148667400 148667495 -13932435 + L1ME LINE L1 5487 5580 -586 2151 114 7 0 chrX 148668062 148668369 -13931561 - AluSg1 SINE Alu 0 309 1 2601 246 22 0 chrX 148668370 148669056 -13930874 - L1P LINE L1 -745 5401 4701 3804 221 25 14 chrX 148669056 148669997 -13929933 + L1P LINE L1 3750 4701 -1445 315 328 70 70 chrX 148670763 148671491 -13928439 + L1M4 LINE L1 3692 4419 -2687 21 36 0 0 chrX 148671491 148671519 -13928411 + AT_rich Low_complexity Low_complexity 1 28 0 249 211 18 0 chrX 148671851 148671908 -13928022 + L1M4 LINE L1 4811 4868 -2238 2406 52 0 0 chrX 148672222 148672512 -13927418 - AluY SINE Alu -21 290 1 307 284 148 11 chrX 148674131 148674307 -13925623 - MIR SINE MIR -58 204 5 21 0 0 0 chrX 148674487 148674508 -13925422 + AT_rich Low_complexity Low_complexity 1 21 0 899 305 49 56 chrX 148674527 148674754 -13925176 - L2 LINE L2 -10 3303 3076 261 0 0 0 chrX 148674754 148674783 -13925147 + (TG)n Simple_repeat Simple_repeat 1 29 0 899 305 49 56 chrX 148674783 148675269 -13924661 - L2 LINE L2 -237 3076 2599 1996 132 7 0 chrX 148675581 148675870 -13924060 - AluSx SINE Alu -21 291 1 216 0 0 0 chrX 148676243 148676267 -13923663 + (TA)n Simple_repeat Simple_repeat 2 25 0 373 306 65 16 chrX 148676617 148676806 -13923124 + MIR SINE MIR 56 256 -6 4164 143 37 61 chrX 148677270 148678102 -13921828 - L1PB4 LINE L1 -2 6154 5343 4516 61 20 13 chrX 148678104 148679132 -13920798 + MER11A LTR ERVK 1 1266 0 3665 211 35 2 chrX 148679133 148679173 -13920757 - L1PB4 LINE L1 -801 5345 5308 203 88 29 0 chrX 148679173 148679207 -13920723 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3665 211 35 2 chrX 148679207 148680022 -13919908 - L1PB4 LINE L1 -838 5308 4462 1270 279 14 18 chrX 148680020 148680466 -13919464 + L1PA15-16 LINE L1 1873 2319 -3827 * 2657 235 18 35 chrX 148680457 148681258 -13918672 + L1 LINE L1 2581 3367 -2779 306 67 0 0 chrX 148681263 148681308 -13918622 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 342 248 23 78 chrX 148683509 148683538 -13916392 - MIR SINE MIR -30 232 203 2012 154 91 10 chrX 148683538 148683934 -13915996 - MSTA LTR MaLR 0 428 1 342 248 23 78 chrX 148683934 148684033 -13915897 - MIR SINE MIR -59 203 111 1455 304 36 12 chrX 148684033 148684526 -13915404 + LTR33 LTR ERVL 1 505 -16 4647 255 35 43 chrX 148684583 148686703 -13913227 - L1MB2 LINE L1 -11 6160 4025 189 74 0 0 chrX 148686703 148686730 -13913200 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 4647 255 35 43 chrX 148686730 148687111 -13912819 - L1MB2 LINE L1 -2146 4025 3767 747 23 0 0 chrX 148687111 148687199 -13912731 - L1PA4 LINE L1 -8 6147 6060 4647 255 35 43 chrX 148687199 148687694 -13912236 - L1MB2 LINE L1 -2404 3767 3270 2045 121 10 0 chrX 148687714 148688020 -13911910 + L1PB1 LINE L1 5799 6107 -44 24 32 0 0 chrX 148688021 148688052 -13911878 + AT_rich Low_complexity Low_complexity 1 31 0 1115 204 68 11 chrX 148688052 148688316 -13911614 - L1ME1 LINE L1 -197 5969 5691 1781 141 28 90 chrX 148688319 148688900 -13911030 - MER4A LTR ERV1 -8 457 1 497 217 0 7 chrX 148688901 148689039 -13910891 - L1MB2 LINE L1 -2870 3276 3140 3453 172 80 53 chrX 148689053 148689833 -13910097 + L1MA4 LINE L1 5491 6291 -9 3840 177 19 15 chrX 148689869 148690651 -13909279 + L1MB2 LINE L1 5353 6098 -82 2229 54 0 11 chrX 148690651 148690927 -13909003 - AluY SINE Alu 0 311 39 3840 177 19 15 chrX 148690927 148691010 -13908920 + L1MB2 LINE L1 6098 6179 -1 226 343 18 24 chrX 148691261 148691430 -13908500 + HAL1b LINE L1 366 533 -815 39 22 0 0 chrX 148691931 148691977 -13907953 + AT_rich Low_complexity Low_complexity 1 46 0 193 307 148 0 chrX 148692003 148692091 -13907839 + L2 LINE L2 1871 1971 -1343 24 53 0 0 chrX 148692114 148692152 -13907778 + AT_rich Low_complexity Low_complexity 1 38 0 478 304 89 50 chrX 148692385 148692980 -13906950 - L1MC4a LINE L1 -297 5824 5323 323 297 117 56 chrX 148693089 148693355 -13906575 - L1MC4a LINE L1 -921 5225 4944 3614 169 45 45 chrX 148693956 148694638 -13905292 + MER54B LTR ERVL 1 682 -111 491 381 49 12 chrX 148694753 148695081 -13904849 - L2 LINE L2 -481 2833 2494 1706 177 0 7 chrX 148695415 148695715 -13904215 - AluJb SINE Alu -12 300 3 730 70 0 0 chrX 148696505 148696605 -13903325 + L1PA13 LINE L1 6060 6159 -4 507 308 104 25 chrX 148697164 148697596 -13902334 + L2 LINE L2 2270 2832 -482 3479 95 6 10 chrX 148697772 148698286 -13901644 - L1PA13 LINE L1 0 6163 5652 1104 37 0 0 chrX 148698286 148698418 -13901512 - L1PA2 LINE L1 -1 6154 6019 901 120 0 0 chrX 148698418 148698543 -13901387 - L1PA13 LINE L1 -503 5665 5541 3927 219 28 2 chrX 148698551 148699352 -13900578 - MSTA-int LTR MaLR -830 821 1 2023 144 123 5 chrX 148699354 148699735 -13900195 - MSTA LTR MaLR -2 426 1 425 348 112 14 chrX 148699735 148700011 -13899919 + MLT1H1 LTR MaLR 71 373 -182 2048 196 39 5 chrX 148700219 148700627 -13899303 - MSTB LTR MaLR -4 422 1 2027 136 3 0 chrX 148700643 148700951 -13898979 - AluSx SINE Alu -3 309 1 201 258 65 75 chrX 148701716 148701809 -13898121 - MIR SINE MIR -13 249 158 211 244 0 22 chrX 148701869 148701914 -13898016 - MIR3 SINE MIR -12 196 153 26 0 0 0 chrX 148702881 148702907 -13897023 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrX 148703928 148703952 -13895978 + AT_rich Low_complexity Low_complexity 1 24 0 255 31 0 0 chrX 148704511 148704543 -13895387 + (TG)n Simple_repeat Simple_repeat 2 33 0 1287 114 0 0 chrX 148705834 148706010 -13893920 + AluSg/x SINE Alu 127 302 -8 516 72 0 0 chrX 148706424 148706493 -13893437 + (TA)n Simple_repeat Simple_repeat 2 70 0 1791 154 9 12 chrX 148707235 148707560 -13892370 + L1MA7 LINE L1 5937 6260 -31 27 0 0 0 chrX 148707582 148707609 -13892321 + AT_rich Low_complexity Low_complexity 1 27 0 324 0 0 0 chrX 148708277 148708313 -13891617 + (CA)n Simple_repeat Simple_repeat 1 36 0 401 176 0 12 chrX 148708313 148708398 -13891532 + GA-rich Low_complexity Low_complexity 2 85 0 26 0 0 0 chrX 148709206 148709232 -13890698 + AT_rich Low_complexity Low_complexity 1 26 0 8206 189 34 17 chrX 148709324 148709651 -13890279 + L1MC1 LINE L1 1 321 -6105 2307 45 0 14 chrX 148709651 148709966 -13889964 + AluY SINE Alu 1 311 0 8206 189 34 17 chrX 148709966 148711540 -13888390 + L1MC1 LINE L1 321 2023 -4403 852 138 88 51 chrX 148711553 148711770 -13888160 + L1MC1 LINE L1 2179 2403 -4023 809 243 92 68 chrX 148711783 148712153 -13887777 - MLT1B LTR MaLR -11 379 1 8870 229 37 25 chrX 148712156 148714277 -13885653 + L1MC1 LINE L1 2408 4503 -2110 417 177 0 0 chrX 148714277 148714356 -13885574 + MADE1 DNA Mariner 2 80 0 8870 229 37 25 chrX 148714356 148716392 -13883538 + L1MC1 LINE L1 4503 6612 -1 363 287 108 23 chrX 148716983 148717112 -13882818 - MIR SINE MIR -112 150 11 2387 61 0 10 chrX 148717266 148717577 -13882353 + AluY SINE Alu 3 310 -1 9385 30 35 0 chrX 148718004 148719937 -13879993 - L1PA4 LINE L1 -3 6152 4179 233 56 0 28 chrX 148720210 148720246 -13879684 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4997 164 9 35 chrX 148720263 148721490 -13878440 - L1PB2 LINE L1 0 6151 4956 27 29 0 0 chrX 148721528 148721562 -13878368 + AT_rich Low_complexity Low_complexity 1 34 0 674 115 10 0 chrX 148721562 148721666 -13878264 - L1PA16 LINE L1 -9 6157 6053 348 24 0 0 chrX 148721682 148721723 -13878207 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 143 0 0 chrX 148721723 148721758 -13878172 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 763 282 93 75 chrX 148722048 148722750 -13877180 - L1M4 LINE L1 -761 5385 4672 1417 161 126 3 chrX 148722762 148722970 -13876960 - L1MB2 LINE L1 -2 6169 5962 336 218 73 22 chrX 148722970 148723146 -13876784 - L1ME2 LINE L1 0 6305 5762 * 917 292 39 14 chrX 148723144 148723425 -13876505 - L1M1 LINE L1 -7051 514 227 * 3496 230 73 0 chrX 148723420 148724281 -13875649 + L1MA2 LINE L1 3300 4223 -1923 1893 179 41 30 chrX 148724281 148724831 -13875099 + MLT2A2 LTR ERVL 1 554 0 6524 144 23 7 chrX 148724831 148725577 -13874353 + L1MA2 LINE L1 4219 4952 -1352 2418 78 0 0 chrX 148725577 148725886 -13874044 + AluY SINE Alu 1 309 -2 6524 144 23 7 chrX 148725886 148727191 -13872739 + L1MA2 LINE L1 4952 6304 0 824 302 35 14 chrX 148727494 148727862 -13872068 - L1ME3A LINE L1 -290 5880 5505 226 215 8 108 chrX 148728106 148728236 -13871694 - L1ME3A LINE L1 -2155 3991 3875 41 36 0 0 chrX 148728253 148728308 -13871622 + AT_rich Low_complexity Low_complexity 1 55 0 1709 69 4 0 chrX 148728319 148728550 -13871380 + L1PA13 LINE L1 5928 6159 -4 4319 196 56 6 chrX 148728596 148729429 -13870501 + MER49 LTR ERV1 7 881 -42 862 197 6 22 chrX 148729435 148729613 -13870317 + AluJb SINE Alu 138 312 0 268 167 0 0 chrX 148729614 148729662 -13870268 + MER49 LTR ERV1 873 920 -3 408 288 21 42 chrX 148729671 148729911 -13870019 - L1ME3A LINE L1 -2368 3778 3544 716 174 29 22 chrX 148729916 148730054 -13869876 + AluSg/x SINE Alu 153 291 -21 2247 95 0 0 chrX 148730074 148730368 -13869562 + AluSg1 SINE Alu 4 297 -12 1233 330 47 33 chrX 148730836 148731748 -13868182 - HERV16 LTR ERVL -3125 1871 881 377 291 137 40 chrX 148731773 148731948 -13867982 - MIR SINE MIR -59 203 12 385 323 139 0 chrX 148732891 148733052 -13866878 + MIR3 SINE MIR 19 199 -9 3328 196 25 16 chrX 148733773 148734238 -13865692 + MER6 DNA MER2_type 2 476 -389 2455 65 0 23 chrX 148734238 148734546 -13865384 - AluY SINE Alu 0 311 11 3328 196 25 16 chrX 148734546 148734727 -13865203 + MER6 DNA MER2_type 476 654 -211 2245 139 23 0 chrX 148734728 148735074 -13864856 + THE1A LTR MaLR 2 355 0 6519 106 37 1 chrX 148735074 148735990 -13863940 + THE1A-int LTR MaLR 1 949 -631 313 300 0 33 chrX 148735995 148736085 -13863845 + L2 LINE L2 3227 3313 0 2022 136 0 7 chrX 148737035 148737347 -13862583 + AluSx SINE Alu 1 310 0 2544 114 14 3 chrX 148737926 148738295 -13861635 - THE1C LTR MaLR 0 375 3 294 255 117 21 chrX 148738306 148738400 -13861530 + MER117 DNA MER1_type 44 146 -51 308 277 60 68 chrX 148738516 148738751 -13861179 - MLT1K LTR MaLR -36 552 320 2276 217 17 24 chrX 148739490 148739914 -13860016 + L1M3 LINE L1 4787 5212 -956 2067 138 3 0 chrX 148739914 148740212 -13859718 + AluSx SINE Alu 3 301 -11 2276 217 17 24 chrX 148740212 148740687 -13859243 + L1M3 LINE L1 5212 5679 -489 202 306 48 0 chrX 148740846 148740908 -13859022 - MIR3 SINE MIR -29 179 115 345 339 43 0 chrX 148742236 148742351 -13857579 - MIR3 SINE MIR -40 168 49 509 197 49 42 chrX 148742370 148742512 -13857418 + MIR SINE MIR 49 191 -71 2165 121 16 47 chrX 148742649 148743036 -13856894 + THE1C LTR MaLR 1 375 0 10257 118 14 33 chrX 148743037 148744642 -13855288 + THE1C-int LTR MaLR 2 1576 -4 23 0 0 0 chrX 148745365 148745388 -13854542 + AT_rich Low_complexity Low_complexity 1 23 0 2076 114 7 0 chrX 148745467 148745748 -13854182 + AluSp SINE Alu 1 283 -30 19398 192 9 16 chrX 148746191 148747010 -13852920 - L1PA13 LINE L1 -2 6812 5989 2312 131 11 6 chrX 148747010 148747362 -13852568 - THE1A LTR MaLR -1 354 1 11097 109 11 1 chrX 148747362 148748926 -13851004 - THE1A-int LTR MaLR 0 1580 1 2630 101 0 0 chrX 148748926 148749281 -13850649 - THE1A LTR MaLR 0 355 1 19398 192 9 16 chrX 148749281 148749927 -13850003 - L1PA13 LINE L1 -823 5991 5342 207 0 0 0 chrX 148749927 148749950 -13849980 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 19398 192 9 16 chrX 148749950 148752485 -13847445 - L1PA13 LINE L1 -1472 5342 2791 396 0 0 0 chrX 148752485 148752529 -13847401 + (TG)n Simple_repeat Simple_repeat 1 44 0 19398 192 9 16 chrX 148752529 148753003 -13846927 - L1PA13 LINE L1 -4023 2791 2315 3209 152 46 41 chrX 148753003 148753634 -13846296 - MER51A LTR ERV1 0 634 1 19398 192 9 16 chrX 148753634 148754450 -13845480 - L1PA13 LINE L1 -4499 2315 1525 232 291 43 43 chrX 148754527 148754668 -13845262 - L1ME LINE L1 -525 5596 5456 235 235 0 0 chrX 148754800 148754851 -13845079 - L1PBa LINE L1 -4663 2200 2150 395 328 92 82 chrX 148756178 148756581 -13843349 + L2 LINE L2 2866 3272 0 275 218 9 127 chrX 148756642 148756752 -13843178 - MIR SINE MIR -71 191 95 378 0 0 0 chrX 148756787 148756829 -13843101 + (TC)n Simple_repeat Simple_repeat 1 42 0 916 311 49 29 chrX 148757006 148757459 -13842471 - LTR16B LTR ERVL -2 462 1 405 0 0 0 chrX 148757565 148757610 -13842320 + (TG)n Simple_repeat Simple_repeat 2 46 0 262 105 0 0 chrX 148757824 148757862 -13842068 + MER103 DNA DNA 3 40 -126 6401 148 19 13 chrX 148758010 148758264 -13841666 - L1MA1 LINE L1 -2 6300 6049 2116 210 19 72 chrX 148758264 148758849 -13841081 - MLT2B3 LTR ERVL 0 554 1 6401 148 19 13 chrX 148758849 148760105 -13839825 - L1MA1 LINE L1 -253 6049 4780 1098 208 4 22 chrX 148760106 148760332 -13839598 - AluJb SINE Alu -90 222 1 7869 198 48 23 chrX 148760332 148762335 -13837595 - L1MA1 LINE L1 -1369 4777 2725 201 239 45 45 chrX 148762335 148762402 -13837528 + MIR SINE MIR 191 257 -5 601 233 23 8 chrX 148762743 148762876 -13837054 - MER5B DNA MER1_type -43 135 1 789 244 18 27 chrX 148763385 148763610 -13836320 - MER58A DNA MER1_type -1 223 1 1166 262 18 7 chrX 148765632 148766123 -13833807 + REP3 LTR ERV 3 562 0 498 342 16 16 chrX 148766236 148766479 -13833451 - L2 LINE L2 -1968 1346 1104 1066 204 0 41 chrX 148767546 148767791 -13832139 - MER46A DNA MER2_type -1 235 1 6429 150 18 1 chrX 148770025 148771514 -13828416 - L1MA2 LINE L1 -1 7722 6209 * 7622 217 16 6 chrX 148771510 148773333 -13826597 - L1MA2 LINE L1 -2061 5504 3663 4324 209 14 47 chrX 148773349 148774326 -13825604 - L1MA2 LINE L1 -6605 960 16 1766 175 0 10 chrX 148775595 148775892 -13824038 - AluSx SINE Alu -16 296 3 505 386 41 5 chrX 148776128 148776348 -13823582 + L3 LINE CR1 1334 1561 -16 866 268 0 0 chrX 148777335 148777518 -13822412 - MER5A DNA MER1_type 0 189 7 2172 195 61 2 chrX 148777778 148778219 -13821711 - MLT1C LTR MaLR 0 467 1 1680 128 0 4 chrX 148778579 148778813 -13821117 + AluSc SINE Alu 3 235 -74 7790 13 0 3 chrX 148778824 148779869 -13820061 - L1PA2 LINE L1 -2 6153 5111 456 133 0 22 chrX 148779869 148779959 -13819971 + Alu SINE Alu 223 310 0 355 350 11 11 chrX 148779988 148780168 -13819762 - L1M4 LINE L1 -1562 4584 4405 731 277 21 29 chrX 148780488 148780726 -13819204 - LTR16B LTR ERVL 0 464 229 485 314 98 5 chrX 148780836 148781030 -13818900 + MIR SINE MIR 3 214 -48 2198 111 0 7 chrX 148781060 148781366 -13818564 - AluSg SINE Alu -6 304 1 616 264 21 0 chrX 148781382 148781526 -13818404 - MLT1A2 LTR MaLR -222 152 6 30 27 0 0 chrX 148781540 148781577 -13818353 + AT_rich Low_complexity Low_complexity 1 37 0 270 0 0 0 chrX 148781577 148781607 -13818323 + (CA)n Simple_repeat Simple_repeat 2 31 0 47 67 0 0 chrX 148781658 148781747 -13818183 + AT_rich Low_complexity Low_complexity 1 89 0 1700 163 55 15 chrX 148781828 148782154 -13817776 + MER44D DNA MER2_type 1 609 0 223 403 168 0 chrX 148782705 148782854 -13817076 + MIR3 SINE MIR 21 194 -14 440 333 59 67 chrX 148782984 148783069 -13816861 - L2 LINE L2 -1 3312 3228 324 48 0 0 chrX 148783069 148783111 -13816819 + (GA)n Simple_repeat Simple_repeat 1 42 0 440 333 59 67 chrX 148783111 148783431 -13816499 - L2 LINE L2 -85 3228 2910 824 229 5 9 chrX 148783464 148783678 -13816252 + L1 LINE L1 4117 4329 -1817 892 88 0 0 chrX 148783678 148783792 -13816138 - AluSg/x SINE Alu -8 301 188 4100 202 22 3 chrX 148783792 148785085 -13814845 + L1P4 LINE L1 4329 5642 -523 3120 83 32 5 chrX 148785086 148785518 -13814412 - MLT2A1 LTR ERVL 0 444 1 13831 69 14 5 chrX 148785518 148785957 -13813973 - HERVL-A1 LTR ERVL 0 5654 5221 198 0 0 0 chrX 148785957 148785979 -13813951 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 13831 69 14 5 chrX 148785979 148787415 -13812515 - HERVL-A1 LTR ERVL -433 5221 3761 615 245 16 38 chrX 148787735 148787919 -13812011 - L1MA10 LINE L1 -7 6327 6148 1550 211 31 3 chrX 148787921 148788276 -13811654 - MLT1A1 LTR MaLR 0 365 1 4101 229 40 11 chrX 148788280 148789879 -13810051 - MLT1A1-int LTR MaLR -4 1731 37 312 192 26 13 chrX 148789879 148789957 -13809973 - MLT1A1-int LTR MaLR -1656 79 1 1726 209 43 0 chrX 148789957 148790307 -13809623 - MLT1A1 LTR MaLR 0 365 1 2055 231 27 2 chrX 148790329 148790841 -13809089 - L1MB1 LINE L1 -42 6211 5687 2993 188 66 3 chrX 148790865 148791472 -13808458 - LTR51 LTR ERV1 0 671 27 1577 185 7 17 chrX 148791490 148791902 -13808028 - L1MB1 LINE L1 -704 5672 5265 577 136 10 19 chrX 148791904 148792007 -13807923 + MER4B LTR ERV1 509 610 0 2922 236 29 7 chrX 148792007 148792874 -13807056 - L1MB1 LINE L1 -2830 3380 2495 1578 317 39 6 chrX 148792899 148793432 -13806498 - L1MB1 LINE L1 -5590 551 1 449 311 61 30 chrX 148793812 148794076 -13805854 + L2 LINE L2 2947 3218 -95 355 229 0 0 chrX 148794226 148794296 -13805634 - L2 LINE L2 -2 3311 3242 405 0 0 0 chrX 148794459 148794504 -13805426 + (TG)n Simple_repeat Simple_repeat 2 46 0 2274 208 17 69 chrX 148794866 148795191 -13804739 - MER41C LTR ERV1 -1 553 270 1637 184 7 3 chrX 148795191 148795474 -13804456 - AluJb SINE Alu -23 289 6 2274 208 17 69 chrX 148795474 148795731 -13804199 - MER41C LTR ERV1 -284 270 1 2153 151 86 8 chrX 148796153 148796550 -13803380 - MSTA LTR MaLR 0 428 1 6353 142 3 21 chrX 148796550 148797639 -13802291 - MSTA-int LTR MaLR 0 1580 512 293 316 21 68 chrX 148847881 148848071 -13751859 - L2 LINE L2 -502 2812 2632 24 67 0 0 chrX 148848713 148848758 -13751172 + AT_rich Low_complexity Low_complexity 1 45 0 1572 126 67 112 chrX 148848839 148849196 -13750734 - MER7A DNA MER2_type -7 339 1 251 230 108 0 chrX 148849291 148849365 -13750565 - L1MC4 LINE L1 -1348 6694 6613 195 42 0 0 chrX 148850147 148850171 -13749759 + (CA)n Simple_repeat Simple_repeat 2 25 0 360 43 0 0 chrX 148850225 148850271 -13749659 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 4125 187 36 12 chrX 148850284 148851570 -13748360 + L1M2 LINE L1 4451 5772 -519 1847 234 44 11 chrX 148851566 148852091 -13747839 + L1MB8 LINE L1 5356 5897 -281 * 1268 188 52 4 chrX 148852081 148852353 -13747577 + L1 LINE L1 3472 3756 -2390 * 1035 201 7 50 chrX 148852354 148852637 -13747293 + L1MB8 LINE L1 5908 6178 0 32 26 0 0 chrX 148852763 148852802 -13747128 + AT_rich Low_complexity Low_complexity 1 39 0 186 43 0 0 chrX 148852823 148852846 -13747084 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 302 273 31 97 chrX 148853120 148853341 -13746589 + L1MEc LINE L1 1114 1256 -4863 310 252 0 69 chrX 148853431 148853562 -13746368 + L1MEc LINE L1 1445 1566 -4563 306 73 0 0 chrX 148854444 148854485 -13745445 + (GGA)n Simple_repeat Simple_repeat 3 43 0 2048 160 64 17 chrX 148854538 148854945 -13744985 + MSTA LTR MaLR 3 428 0 8821 185 18 28 chrX 148854945 148856613 -13743317 + MSTA-int LTR MaLR 1 1651 0 2212 171 51 5 chrX 148856613 148857022 -13742908 + MSTA LTR MaLR 1 428 0 231 146 0 0 chrX 148857022 148857063 -13742867 + (CA)n Simple_repeat Simple_repeat 1 41 0 525 302 60 51 chrX 148857121 148857591 -13742339 + L1M4 LINE L1 3348 3821 -2325 381 206 0 0 chrX 148857601 148857669 -13742261 + L1M3 LINE L1 5668 5735 -436 230 138 35 17 chrX 148857904 148857962 -13741968 + L1ME3A LINE L1 5329 5387 -775 492 257 104 27 chrX 148857967 148858189 -13741741 + L1ME3A LINE L1 5724 5962 -208 680 289 96 35 chrX 148860136 148860448 -13739482 - MLT1J LTR MaLR -157 354 24 221 352 117 41 chrX 148860897 148861042 -13738888 - L2 LINE L2 0 3272 3117 1508 218 22 14 chrX 148861075 148861437 -13738493 + MLT1A1 LTR MaLR 1 365 0 2198 227 111 28 chrX 148861437 148862050 -13737880 + MLT1A1-int LTR MaLR 1 664 -1071 332 174 43 14 chrX 148862100 148862169 -13737761 + MLT1A1-int LTR MaLR 811 881 -490 394 233 19 10 chrX 148862230 148862333 -13737597 + MLT1A1-int LTR MaLR 677 780 -955 1094 216 84 73 chrX 148862413 148862769 -13737161 + MLT1A1-int LTR MaLR 1198 1557 -178 225 367 23 23 chrX 148862799 148862976 -13736954 - L2 LINE L2 -246 3067 2891 187 216 39 10 chrX 148864945 148865047 -13734883 + (TA)n Simple_repeat Simple_repeat 1 105 0 197 108 27 0 chrX 148865061 148865098 -13734832 + (TG)n Simple_repeat Simple_repeat 1 38 0 243 100 0 20 chrX 148865098 148865148 -13734782 - LTR66 LTR ERVL -172 438 390 2789 10 0 0 chrX 148865233 148865542 -13734388 - AluYa5 SINE Alu -2 309 1 385 255 16 122 chrX 148866076 148866264 -13733666 + MIR3 SINE MIR 23 180 -28 1984 135 0 0 chrX 148866340 148866629 -13733301 - AluSx SINE Alu -11 301 13 371 325 108 50 chrX 148866639 148867073 -13732857 - L2 LINE L2 -94 3178 2739 216 308 77 0 chrX 148867190 148867255 -13732675 + L2 LINE L2 3244 3313 0 414 0 0 0 chrX 148868382 148868428 -13731502 + (GA)n Simple_repeat Simple_repeat 1 46 0 541 358 31 4 chrX 148869215 148869469 -13730461 + MIR SINE MIR 2 262 0 203 229 21 0 chrX 148870178 148870226 -13729704 + (TA)n Simple_repeat Simple_repeat 1 49 0 1331 350 11 6 chrX 148871416 148871885 -13728045 + MLT2F LTR ERVL 32 502 -161 883 213 28 28 chrX 148871889 148872143 -13727787 - L1 LINE L1 -992 5154 4901 279 259 0 0 chrX 148872200 148872285 -13727645 + (TA)n Simple_repeat Simple_repeat 1 85 0 385 281 67 18 chrX 148872363 148872527 -13727403 + L1ME LINE L1 5647 5818 -344 2458 151 3 0 chrX 148872589 148872960 -13726970 + L1PB2 LINE L1 5 376 -7205 * 5665 179 13 7 chrX 148872959 148874892 -13725038 + L1PB2 LINE L1 2495 7586 -3 413 256 44 38 chrX 148874981 148875141 -13724789 + L2 LINE L2 3150 3310 -3 19813 196 11 7 chrX 148875141 148879355 -13720575 + L1PA13 LINE L1 1239 5470 -693 2228 65 0 10 chrX 148879355 148879648 -13720282 - L1PA6 LINE L1 -7 6147 5858 4217 109 31 37 chrX 148879648 148880352 -13719578 + L1PA13 LINE L1 5461 6160 -3 2131 114 0 13 chrX 148880666 148880974 -13718956 + AluSx SINE Alu 1 304 -8 368 298 29 35 chrX 148881082 148881305 -13718625 - ERVL LTR ERVL -1462 4023 3802 397 329 81 8 chrX 148881307 148881553 -13718377 - ERVL LTR ERVL -956 4808 4545 1548 322 103 12 chrX 148881640 148882462 -13717468 - ERVL LTR ERVL -1348 4416 3520 667 69 0 0 chrX 148882486 148882573 -13717357 + AluSg/x SINE Alu 168 254 -56 279 0 0 0 chrX 148882581 148882612 -13717318 + (TAA)n Simple_repeat Simple_repeat 2 32 0 605 310 50 4 chrX 148882673 148882915 -13717015 - ERVL LTR ERVL -2254 3400 3148 347 298 19 89 chrX 148884551 148884709 -13715221 + MIR SINE MIR 20 166 -96 318 356 56 65 chrX 148884744 148885067 -13714863 + L2 LINE L2 2945 3264 -8 201 323 0 15 chrX 148885316 148885381 -13714549 + L2 LINE L2 3249 3312 -1 1141 155 5 0 chrX 148886673 148886867 -13713063 + L1PB1 LINE L1 6 200 -6663 14089 192 38 20 chrX 148886869 148888743 -13711187 + L1PB1 LINE L1 636 2475 -4392 2098 129 3 0 chrX 148888743 148889038 -13710892 + AluSg SINE Alu 1 296 -14 14089 192 38 20 chrX 148889038 148892883 -13707047 + L1PB1 LINE L1 2475 6659 -208 443 193 47 87 chrX 148892925 148893075 -13706855 - MER106B DNA MER1_type -2 1057 914 187 337 153 0 chrX 148895253 148895351 -13704579 + L2 LINE L2 3160 3272 0 8502 69 3 1 chrX 148895432 148897320 -13702610 - L1PA6 LINE L1 -3 6151 4253 236 239 169 0 chrX 148897585 148897656 -13702274 - L2 LINE L2 -55 3258 3176 407 326 8 8 chrX 148897671 148897803 -13702127 - MIR SINE MIR -26 236 105 22 56 0 0 chrX 148898128 148898164 -13701766 + AT_rich Low_complexity Low_complexity 1 36 0 359 298 53 40 chrX 148898741 148898892 -13701038 + L2 LINE L2 3158 3310 -3 592 269 176 5 chrX 148899199 148899392 -13700538 + MIR SINE MIR 16 241 -21 695 204 48 32 chrX 148899531 148899717 -13700213 - MER53 DNA DNA 0 189 1 270 229 0 0 chrX 148900431 148900501 -13699429 + (TA)n Simple_repeat Simple_repeat 2 71 0 285 51 0 0 chrX 148900540 148900579 -13699351 + (CA)n Simple_repeat Simple_repeat 2 40 0 597 322 118 25 chrX 148900668 148901031 -13698899 + L2 LINE L2 2917 3313 0 193 339 0 0 chrX 148901041 148901106 -13698824 - MIR SINE MIR 0 262 198 351 270 119 62 chrX 148901685 148901911 -13698019 - L3 LINE CR1 -1 1576 1338 192 204 91 0 chrX 148902057 148902101 -13697829 + L2 LINE L2 3224 3271 -1 246 375 39 16 chrX 148906022 148906150 -13693780 - L2 LINE L2 0 3272 3142 243 368 22 44 chrX 148906182 148906244 -13693686 - MER5A DNA MER1_type -1 188 126 252 0 0 0 chrX 148906244 148906272 -13693658 + (TA)n Simple_repeat Simple_repeat 2 29 0 243 368 22 44 chrX 148906272 148906345 -13693585 - MER5A DNA MER1_type -63 126 56 238 151 0 38 chrX 148906601 148906654 -13693276 + L1PA15 LINE L1 6099 6149 -16 1565 215 9 13 chrX 148907600 148907916 -13692014 + MLT1A1 LTR MaLR 1 315 -50 846 221 50 82 chrX 148907918 148908199 -13691731 - MLT1A2 LTR MaLR -102 272 1 2247 289 43 15 chrX 148908201 148908873 -13691057 - L1M4b LINE L1 -6069 790 100 249 253 40 0 chrX 148908873 148908948 -13690982 + (CATA)n Simple_repeat Simple_repeat 3 80 0 255 269 60 27 chrX 148909202 148909351 -13690579 + HAL1 LINE L1 755 908 -1599 288 281 122 79 chrX 148909407 148910006 -13689924 + HAL1 LINE L1 996 1634 -873 2516 37 0 31 chrX 148910006 148910327 -13689603 + AluY SINE Alu 1 311 0 288 281 122 79 chrX 148910327 148910463 -13689467 + HAL1 LINE L1 1634 1763 -744 312 288 53 38 chrX 148910468 148910600 -13689330 + HAL1 LINE L1 1815 1948 -559 430 202 17 59 chrX 148911490 148911609 -13688321 - L2 LINE L2 0 3313 3200 32 26 0 0 chrX 148913087 148913126 -13686804 + AT_rich Low_complexity Low_complexity 1 39 0 2032 98 29 0 chrX 148913452 148913728 -13686202 + AluSg SINE Alu 1 284 -26 272 371 20 7 chrX 148914164 148914315 -13685615 + MIR SINE MIR 2 154 -108 1371 243 186 4 chrX 148914317 148914795 -13685135 - MLT1F1 LTR MaLR 0 567 3 190 338 75 53 chrX 148915523 148915656 -13684274 - L2 LINE L2 -1 3271 3136 744 249 5 31 chrX 148915785 148915978 -13683952 - MER5A DNA MER1_type 0 189 2 240 356 72 57 chrX 148916053 148916167 -13683763 - L2 LINE L2 -451 2863 2752 1681 181 7 10 chrX 148916167 148916470 -13683460 - AluSx SINE Alu -6 306 5 240 356 72 57 chrX 148916470 148916619 -13683311 - L2 LINE L2 -562 2752 2596 2238 94 3 0 chrX 148916656 148916955 -13682975 + AluSp SINE Alu 3 302 -11 559 283 40 35 chrX 148917000 148917198 -13682732 - MIR SINE MIR -1 261 63 291 82 0 20 chrX 148917206 148917255 -13682675 + MADE1 DNA Mariner 33 80 0 5085 83 15 3 chrX 148917255 148917968 -13681962 - LTR30 LTR ERV1 0 722 1 940 306 113 50 chrX 148918397 148918877 -13681053 + L2 LINE L2 2804 3313 0 519 237 34 8 chrX 148918904 148919022 -13680908 + L2 LINE L2 3190 3310 -3 208 295 49 0 chrX 148919219 148919280 -13680650 + L2 LINE L2 3151 3214 -58 1537 173 7 15 chrX 148919428 148919700 -13680230 + AluJb SINE Alu 1 270 -42 232 316 7 29 chrX 148919987 148920126 -13679804 - L1ME LINE L1 -264 5906 5771 579 122 51 0 chrX 148920275 148920373 -13679557 + L1MB2 LINE L1 6067 6169 -2 3652 202 44 22 chrX 148920387 148921312 -13678618 - Charlie1a DNA MER1_type 0 1455 510 5368 176 34 31 chrX 148921312 148922867 -13677063 + L1MA5 LINE L1 4745 6300 0 1739 255 27 42 chrX 148922894 148923412 -13676518 - Charlie1a DNA MER1_type -945 510 1 319 325 107 6 chrX 148923417 148923586 -13676344 - L1ME LINE L1 -512 5650 5465 510 232 21 7 chrX 148923676 148923818 -13676112 - L1MC4a LINE L1 -1889 5919 5776 381 302 93 15 chrX 148924063 148924397 -13675533 - L1MC4a LINE L1 -1089 5057 4698 218 200 0 0 chrX 148924641 148924681 -13675249 + CT-rich Low_complexity Low_complexity 4 43 0 219 36 0 0 chrX 148924681 148924709 -13675221 + (CA)n Simple_repeat Simple_repeat 1 28 0 337 268 118 0 chrX 148926637 148926790 -13673140 - L1ME4a LINE L1 -1 6120 5950 635 321 82 61 chrX 148927202 148927606 -13672324 + L2 LINE L2 1691 2108 -1206 1752 178 109 25 chrX 148927606 148927999 -13671931 + MSTB LTR MaLR 1 426 0 635 321 82 61 chrX 148927999 148928067 -13671863 + L2 LINE L2 2108 2173 -1141 255 308 60 49 chrX 148928217 148928402 -13671528 + L2 LINE L2 3127 3313 0 203 147 0 0 chrX 148928571 148928605 -13671325 + (TG)n Simple_repeat Simple_repeat 1 34 0 1446 324 50 0 chrX 148929069 148929548 -13670382 + L2 LINE L2 661 1163 -2151 219 366 83 59 chrX 148929640 148929894 -13670036 + L2 LINE L2 2594 2853 -461 1629 152 0 14 chrX 148931403 148931693 -13668237 + L1PA13 LINE L1 1768 2053 -4734 473 233 31 63 chrX 148931827 148931986 -13667944 + L2 LINE L2 3159 3312 -1 5680 239 15 8 chrX 148932014 148933424 -13666506 + L1P LINE L1 1264 2682 -3464 1445 111 19 5 chrX 148933428 148933644 -13666286 - THE1C LTR MaLR -2 373 155 5060 187 98 94 chrX 149133644 149134766 -13465164 + L1MC3 LINE L1 5966 7186 -599 261 333 11 0 chrX 149134766 149134856 -13465074 + MLT1F1 LTR MaLR 35 125 -442 5060 187 98 94 chrX 149134856 149135373 -13464557 + L1MC3 LINE L1 7186 7700 -85 25 0 0 0 chrX 149135665 149135690 -13464240 + AT_rich Low_complexity Low_complexity 1 25 0 3046 309 101 36 chrX 149135832 149137233 -13462697 - L2 LINE L2 -2 3311 2002 2593 55 0 0 chrX 149137233 149137544 -13462386 + AluY SINE Alu 1 311 0 3046 309 101 36 chrX 149137544 149137651 -13462279 - L2 LINE L2 -1311 2002 1903 2093 122 25 74 chrX 149137651 149138045 -13461885 - THE1C LTR MaLR 0 375 1 10152 107 30 36 chrX 149138045 149139636 -13460294 - THE1C-int LTR MaLR 0 1580 1 2227 149 16 16 chrX 149139636 149140011 -13459919 - THE1C LTR MaLR 0 375 1 3046 309 101 36 chrX 149140011 149140223 -13459707 - L2 LINE L2 -1409 1904 1470 331 320 109 32 chrX 149140877 149141124 -13458806 + L1M4 LINE L1 3252 3517 -2629 257 317 62 14 chrX 149141141 149141286 -13458644 + L1MEc LINE L1 360 511 -6210 1895 167 55 9 chrX 149141409 149141756 -13458174 + MLT1A1 LTR MaLR 1 363 -2 339 293 40 20 chrX 149142555 149142705 -13457225 + L1MEc LINE L1 1202 1354 -5176 260 269 10 10 chrX 149142735 149142839 -13457091 + L1MEc LINE L1 1623 1726 -4814 4876 180 29 26 chrX 149142904 149144336 -13455594 + L1MA9 LINE L1 4881 6311 -1 198 246 0 0 chrX 149144567 149144628 -13455302 + (TA)n Simple_repeat Simple_repeat 2 62 0 2758 120 29 19 chrX 149144663 149145146 -13454784 - L1MA1 LINE L1 -1 6301 5814 320 321 101 12 chrX 149145264 149145432 -13454498 - MIR SINE MIR -68 194 12 330 244 84 91 chrX 149146829 149147223 -13452707 + L1ME4a LINE L1 5725 6115 -6 1750 217 39 12 chrX 149147273 149147941 -13451989 - L1MC/D LINE L1 -745 5401 4975 676 254 104 7 chrX 149147995 149148282 -13451648 - Tigger8 DNA MER2_type -255 411 97 577 211 0 0 chrX 149148304 149148437 -13451493 - L1M4 LINE L1 -983 5163 5031 441 216 35 35 chrX 149148479 149148496 -13451434 - L1M4 LINE L1 -1087 5059 5043 2405 90 3 0 chrX 149148496 149148808 -13451122 - AluSq SINE Alu 0 313 1 441 216 35 35 chrX 149148808 149148961 -13450969 - L1M4 LINE L1 -1102 5044 4889 37 39 0 0 chrX 149148971 149149022 -13450908 + AT_rich Low_complexity Low_complexity 1 51 0 349 314 91 0 chrX 149149099 149149220 -13450710 + L2 LINE L2 3141 3272 0 251 246 0 0 chrX 149150001 149150058 -13449872 - MER58 DNA MER1_type -2 2418 2362 323 271 0 24 chrX 149150062 149150147 -13449783 - MER58 DNA MER1_type -2159 261 179 24 77 0 0 chrX 149150262 149150314 -13449616 + AT_rich Low_complexity Low_complexity 1 52 0 2322 138 45 17 chrX 149150625 149151120 -13448810 + MLT2A2 LTR ERVL 2 434 -19 229 184 145 0 chrX 149151145 149151221 -13448709 - L1MC/D LINE L1 -2340 5468 5382 404 305 19 9 chrX 149151865 149151970 -13447960 + MER5A DNA MER1_type 1 106 -83 18337 183 21 28 chrX 149151970 149155330 -13444600 + L1MA2 LINE L1 9 3340 -4225 2272 99 0 7 chrX 149155330 149155632 -13444298 - AluSg SINE Alu -10 300 1 18337 183 21 28 chrX 149155632 149156061 -13443869 + L1MA2 LINE L1 3340 3771 -3794 3301 145 7 12 chrX 149156056 149156656 -13443274 + L1MA2 LINE L1 5432 6028 -1537 * 6215 144 5 22 chrX 149156653 149157369 -13442561 + L1MA2 LINE L1 6541 7230 -493 2322 112 0 0 chrX 149157369 149157681 -13442249 + AluSx SINE Alu 1 312 0 6215 144 5 22 chrX 149157681 149158167 -13441763 + L1MA2 LINE L1 7230 7723 0 340 220 168 35 chrX 149158284 149158457 -13441473 + L2 LINE L2 3109 3304 -9 1735 184 27 3 chrX 149158560 149158936 -13440994 - L1MA5 LINE L1 -4 6296 5912 1272 127 5 0 chrX 149158970 149159167 -13440763 - L1MA5 LINE L1 -715 5585 5388 1263 203 11 25 chrX 149159175 149159454 -13440476 - MLT1A1 LTR MaLR -42 584 49 4501 135 12 4 chrX 149159455 149160183 -13439747 - L1PA13 LINE L1 0 6163 5430 2229 190 33 0 chrX 149160183 149160712 -13439218 + L1P LINE L1 4889 5427 -734 495 172 78 0 chrX 149160715 149160843 -13439087 - L1MA5 LINE L1 -909 5391 5254 2832 176 24 54 chrX 149160857 149161560 -13438370 + L1MA5 LINE L1 4551 5232 -914 410 261 20 13 chrX 149162226 149162379 -13437551 + MIR3 SINE MIR 64 204 -4 683 320 33 12 chrX 149162575 149162819 -13437111 - MIR SINE MIR 0 262 14 1652 213 108 0 chrX 149162965 149163318 -13436612 - MSTD LTR MaLR -5 391 1 290 408 48 0 chrX 149163634 149163759 -13436171 - L2 LINE L2 -16 3256 3126 452 338 0 7 chrX 149163852 149163994 -13435936 + MIR SINE MIR 13 153 -109 192 390 25 0 chrX 149165106 149165224 -13434706 + MIR3 SINE MIR 73 193 -15 207 267 69 59 chrX 149165333 149165434 -13434496 - MIR SINE MIR -2 260 159 466 307 36 30 chrX 149165873 149166039 -13433891 + MIR3 SINE MIR 33 199 -9 783 99 130 0 chrX 149166223 149166354 -13433576 - L1PA10 LINE L1 -5 6163 6016 496 238 48 41 chrX 149167374 149167521 -13432409 - MIR SINE MIR -21 241 94 23 33 0 0 chrX 149168038 149168068 -13431862 + AT_rich Low_complexity Low_complexity 1 30 0 824 228 60 51 chrX 149169315 149169564 -13430366 - MIR SINE MIR 0 262 5 493 264 7 57 chrX 149171940 149172080 -13427850 - L2 LINE L2 -2 3311 3179 1959 128 75 20 chrX 149172725 149173070 -13426860 + THE1B LTR MaLR 1 364 0 11210 109 6 1 chrX 149173070 149174643 -13425287 + THE1B-int LTR MaLR 1 1580 0 2080 110 81 26 chrX 149174643 149174988 -13424942 + THE1B LTR MaLR 1 364 0 726 257 50 9 chrX 149175079 149175301 -13424629 - L2 LINE L2 0 3313 3083 337 315 127 47 chrX 149175812 149176215 -13423715 + L2 LINE L2 2199 2633 -681 236 345 25 17 chrX 149176356 149176475 -13423455 + L2 LINE L2 2617 2736 -578 468 330 57 22 chrX 149176698 149176925 -13423005 - MIR SINE MIR -26 236 2 28 29 0 0 chrX 149177274 149177309 -13422621 + AT_rich Low_complexity Low_complexity 1 35 0 363 318 183 38 chrX 149178165 149178696 -13421234 + L2 LINE L2 2670 3310 -3 184 381 31 88 chrX 149178669 149178829 -13421101 - L2 LINE L2 -7 3265 3115 * 187 119 48 48 chrX 149178937 149178979 -13420951 - L2 LINE L2 -830 2484 2443 236 387 83 5 chrX 149178987 149179191 -13420739 - L2 LINE L2 -733 2581 2362 195 186 0 0 chrX 149179208 149179251 -13420679 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 512 237 0 0 chrX 149179295 149179392 -13420538 - FLAM_A SINE Alu -32 110 14 397 356 43 22 chrX 149180534 149180764 -13419166 + MIR SINE MIR 2 236 -26 2356 180 21 21 chrX 149181514 149182043 -13417887 - L1MA8 LINE L1 -2 6289 5761 8984 201 42 32 chrX 149182054 149185569 -13414361 - L1PB3 LINE L1 -3 6208 2728 212 0 36 0 chrX 149185569 149185597 -13414333 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8984 201 42 32 chrX 149185597 149187177 -13412753 - L1PB3 LINE L1 -3483 2728 1049 2194 113 0 16 chrX 149187177 149187495 -13412435 + AluSq SINE Alu 1 313 0 8984 201 42 32 chrX 149187495 149187844 -13412086 - L1PB3 LINE L1 -5162 1049 705 3174 187 40 12 chrX 149187854 149188500 -13411430 - L1PB3 LINE L1 -5536 668 5 357 340 7 7 chrX 149188532 149188673 -13411257 - L1PBa LINE L1 -5267 1596 1456 703 305 28 41 chrX 149188709 149189103 -13410827 - L1PBa LINE L1 -5646 1217 829 2990 28 6 0 chrX 149189109 149189466 -13410464 + L1PA4 LINE L1 5797 6155 0 648 73 0 42 chrX 149189507 149189617 -13410313 - L1P5 LINE L1 -376 5780 5676 294 287 73 59 chrX 149190494 149190649 -13409281 - MIR SINE MIR -64 144 38 914 315 68 79 chrX 149190828 149191571 -13408359 - L2 LINE L2 -4 3309 2551 275 365 42 0 chrX 149191596 149191692 -13408238 + L2 LINE L2 3169 3268 -4 1025 186 28 14 chrX 149192468 149192683 -13407247 - MER20 DNA MER1_type 0 219 2 667 341 50 24 chrX 149192718 149193052 -13406878 - L2 LINE L2 -1 3271 2930 531 299 45 11 chrX 149193198 149193375 -13406555 - MIR SINE MIR -72 190 8 295 296 50 44 chrX 149193705 149193864 -13406066 + MIR SINE MIR 52 211 -51 219 36 0 0 chrX 149194203 149194231 -13405699 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 6247 160 17 3 chrX 149194604 149196294 -13403636 - L1MA2 LINE L1 0 7723 6009 * 18415 186 35 15 chrX 149196291 149199906 -13400024 - L1MA2 LINE L1 -3870 3695 9 2083 230 46 15 chrX 149199903 149200443 -13399487 - L1MB7 LINE L1 -7 6177 5621 * 849 284 137 18 chrX 149201380 149201760 -13398170 + L2 LINE L2 2359 2783 -531 364 295 78 26 chrX 149202216 149202409 -13397521 + L1M4 LINE L1 2400 2602 -3544 2301 95 0 0 chrX 149202421 149202716 -13397214 + AluSc SINE Alu 1 295 -14 618 269 71 62 chrX 149202887 149203296 -13396634 + LTR33A LTR ERVL 143 523 0 920 329 39 31 chrX 149203371 149203760 -13396170 + LTR33 LTR ERVL 3 394 -127 346 244 90 90 chrX 149203863 149204097 -13395833 + L1M4 LINE L1 2738 2971 -3175 301 301 77 87 chrX 149204187 149204602 -13395328 - L1MEc LINE L1 -4720 1676 1266 13373 145 69 42 chrX 149204743 149205332 -13394598 - LTR49-int LTR ERV1 -879 5719 5147 1566 174 72 33 chrX 149205332 149205693 -13394237 + THE1C LTR MaLR 1 375 0 13373 145 69 42 chrX 149205693 149209503 -13390427 - LTR49-int LTR ERV1 -1451 5147 198 763 253 69 17 chrX 149209505 149209766 -13390164 - LTR49-int LTR ERV1 -4170 2161 1368 2609 133 150 33 chrX 149209766 149210350 -13389580 - MER4A LTR ERV1 -4 650 1 528 267 203 10 chrX 149211129 149211331 -13388599 + MIR SINE MIR 20 260 -2 996 62 0 0 chrX 149211349 149211478 -13388452 - L1PA5 LINE L1 -3 6151 6023 181 361 82 0 chrX 149212209 149212270 -13387660 + L2 LINE L2 3168 3233 -39 1221 188 160 7 chrX 149212411 149212704 -13387226 + MLT2C1 LTR ERVL 3 340 -57 237 33 0 0 chrX 149212704 149212734 -13387196 + (TG)n Simple_repeat Simple_repeat 1 30 0 436 316 23 45 chrX 149212964 149213210 -13386720 + MIR SINE MIR 20 257 -5 298 84 70 84 chrX 149213336 149213407 -13386523 + L1PA13 LINE L1 6094 6163 0 189 296 12 62 chrX 149213435 149213516 -13386414 - MER5B DNA MER1_type 0 178 102 223 158 0 0 chrX 149213561 149213599 -13386331 - MER5B DNA MER1_type -137 41 4 385 334 131 43 chrX 149214379 149214450 -13385480 - L1ME4a LINE L1 -186 5935 5872 918 228 18 14 chrX 149214450 149214669 -13385261 - MER58A DNA MER1_type -1 223 4 385 334 131 43 chrX 149214669 149215016 -13384914 - L1ME4a LINE L1 -249 5872 5480 24 0 0 0 chrX 149215511 149215535 -13384395 + AT_rich Low_complexity Low_complexity 1 24 0 453 50 0 0 chrX 149216132 149216192 -13383738 + (TG)n Simple_repeat Simple_repeat 1 60 0 878 246 31 41 chrX 149216312 149216566 -13383364 + MIR SINE MIR 13 261 -1 1985 168 87 13 chrX 149216717 149217110 -13382820 + MSTB LTR MaLR 1 422 -4 2294 142 13 25 chrX 149218495 149218890 -13381040 + MLT1B LTR MaLR 1 390 0 4882 91 6 1 chrX 149219541 149220244 -13379686 - L1P LINE L1 -1076 5070 4365 4541 99 15 0 chrX 149220242 149220911 -13379019 - L1P LINE L1 -3305 2841 2163 * 4366 96 24 0 chrX 149220910 149221537 -13378393 + L1P LINE L1 1511 2152 -3994 * 23 33 0 0 chrX 149221846 149221876 -13378054 + AT_rich Low_complexity Low_complexity 1 30 0 2330 80 0 34 chrX 149223714 149224038 -13375892 + AluSp SINE Alu 1 313 0 235 300 0 0 chrX 149224274 149224334 -13375596 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 315 0 0 0 chrX 149224711 149224746 -13375184 + (CA)n Simple_repeat Simple_repeat 1 35 0 237 357 40 32 chrX 149224749 149224875 -13375055 + MIR SINE MIR 25 151 -57 362 320 55 0 chrX 149225432 149225560 -13374370 + L2 LINE L2 2569 2703 -611 472 308 32 22 chrX 149225563 149225748 -13374182 + MER5A DNA MER1_type 2 188 -1 * 834 268 134 49 chrX 149225748 149226275 -13373655 + L2 LINE L2 2711 3300 -13 307 250 131 45 chrX 149226485 149226661 -13373269 - L1MEd LINE L1 -4955 1164 974 597 286 6 18 chrX 149226689 149226860 -13373070 + MER20 DNA MER1_type 51 219 0 299 111 0 19 chrX 149226907 149226961 -13372969 + (TA)n Simple_repeat Simple_repeat 2 54 0 1212 139 42 30 chrX 149228804 149229041 -13370889 - L1MA2 LINE L1 0 6304 6065 16648 217 41 28 chrX 149229167 149229885 -13370045 + L1MA1 LINE L1 11 718 -6847 214 26 51 26 chrX 149229885 149229924 -13370006 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 16648 217 41 28 chrX 149229924 149234447 -13365483 + L1MA1 LINE L1 718 5687 -1878 1392 152 84 8 chrX 149234447 149234697 -13365233 - MSTA LTR MaLR 0 428 160 16648 217 41 28 chrX 149234697 149235441 -13364489 + L1MA1 LINE L1 5687 6420 -1145 1060 162 0 12 chrX 149235441 149235614 -13364316 + AluSg/x SINE Alu 129 299 -13 6014 146 31 11 chrX 149235615 149236255 -13363675 + L1MA1 LINE L1 6417 7043 -678 3917 41 19 10 chrX 149236255 149236741 -13363189 + LTR2B LTR ERV1 1 490 0 6014 146 31 11 chrX 149236741 149237376 -13362554 + L1MA1 LINE L1 7043 7717 -4 22 70 0 0 chrX 149237381 149237424 -13362506 + AT_rich Low_complexity Low_complexity 1 43 0 525 386 31 17 chrX 149237504 149237797 -13362133 + L2 LINE L2 2848 3144 -169 292 224 24 0 chrX 149238268 149238353 -13361577 + (TA)n Simple_repeat Simple_repeat 2 88 0 487 300 25 63 chrX 149238675 149238778 -13361152 - MIR SINE MIR -15 247 142 244 0 27 27 chrX 149238778 149238815 -13361115 + (TTA)n Simple_repeat Simple_repeat 2 38 0 5245 28 2 0 chrX 149238815 149239429 -13360501 - L1PA3 LINE L1 -19 6136 5522 487 300 25 63 chrX 149239429 149239516 -13360414 - MIR SINE MIR -119 143 64 2636 101 3 11 chrX 149239516 149239894 -13360036 - THE1C LTR MaLR 0 375 1 487 300 25 63 chrX 149239894 149239938 -13359992 - MIR SINE MIR -198 64 20 199 332 122 15 chrX 149240169 149240304 -13359626 - MIR SINE MIR -65 143 44 42 0 0 0 chrX 149240304 149240346 -13359584 + AT_rich Low_complexity Low_complexity 1 42 0 218 143 0 48 chrX 149240503 149240545 -13359385 + (TATG)n Simple_repeat Simple_repeat 4 43 0 23 0 0 0 chrX 149241317 149241340 -13358590 + AT_rich Low_complexity Low_complexity 1 23 0 338 319 30 22 chrX 149241762 149241897 -13358033 + MIR3 SINE MIR 60 195 -13 2490 54 0 0 chrX 149241996 149242294 -13357636 + AluY SINE Alu 3 300 -11 608 215 28 20 chrX 149242573 149242781 -13357149 + MER92A LTR ERV1 267 412 0 27 0 0 0 chrX 149243706 149243733 -13356197 + AT_rich Low_complexity Low_complexity 1 27 0 25 90 0 0 chrX 149243895 149243962 -13355968 + AT_rich Low_complexity Low_complexity 1 67 0 4801 180 44 30 chrX 149244948 149246482 -13353448 + L1M1 LINE L1 4165 5721 -579 370 124 72 0 chrX 149246492 149246645 -13353285 + (TA)n Simple_repeat Simple_repeat 2 165 0 247 155 0 0 chrX 149246654 149246712 -13353218 + LTR66 LTR ERVL 394 451 -159 646 309 19 4 chrX 149246713 149246969 -13352961 - L1 LINE L1 -3432 4133 3874 1740 171 48 27 chrX 149246969 149247302 -13352628 + THE1B LTR MaLR 1 340 -24 9189 180 26 40 chrX 149247302 149248088 -13351842 - L1 LINE L1 -4517 3048 2253 2390 55 0 0 chrX 149248088 149248377 -13351553 - AluY SINE Alu -22 289 1 9189 180 26 40 chrX 149248377 149249515 -13350415 - L1 LINE L1 -5312 2253 1151 2708 91 37 5 chrX 149249515 149249555 -13350375 - MLT2A1 LTR ERVL 0 444 407 303 85 0 0 chrX 149249555 149249602 -13350328 + (TA)n Simple_repeat Simple_repeat 1 47 0 2708 91 37 5 chrX 149249602 149249944 -13349986 - MLT2A1 LTR ERVL -37 407 50 3223 251 29 12 chrX 149249946 149250784 -13349146 - L1 LINE L1 -6698 867 16 267 263 28 62 chrX 149250813 149250992 -13348938 + L1ME3A LINE L1 4487 4659 -1487 * 5679 166 30 23 chrX 149250990 149251201 -13348729 + L1MA2 LINE L1 4909 5117 -1187 1837 124 0 4 chrX 149251201 149251468 -13348462 + AluSq SINE Alu 44 309 -4 5679 166 30 23 chrX 149251468 149252649 -13347281 + L1MA2 LINE L1 5117 6304 0 1078 274 123 26 chrX 149252801 149253112 -13346818 + L2 LINE L2 2814 3184 -129 1825 201 8 6 chrX 149253112 149253476 -13346454 + MER47A DNA MER2_type 2 366 0 1078 274 123 26 chrX 149253476 149253620 -13346310 + L2 LINE L2 3184 3313 0 653 284 86 57 chrX 149253645 149254155 -13345775 + L1ME3A LINE L1 4797 5321 -825 726 297 85 61 chrX 149254179 149254684 -13345246 + L1ME3A LINE L1 5391 5907 -263 2545 24 0 0 chrX 149254684 149254973 -13344957 + AluYa5 SINE Alu 1 289 -22 540 290 132 20 chrX 149255542 149255969 -13343961 + L1MB8 LINE L1 5405 5881 -297 219 306 20 41 chrX 149256711 149256809 -13343121 - MIR SINE MIR -83 179 84 28 0 0 0 chrX 149257661 149257689 -13342241 + AT_rich Low_complexity Low_complexity 1 28 0 2351 94 3 0 chrX 149258017 149258324 -13341606 + AluSp SINE Alu 1 308 -5 222 37 0 0 chrX 149258995 149259022 -13340908 + (T)n Simple_repeat Simple_repeat 1 27 0 241 282 129 48 chrX 149259566 149259690 -13340240 - MIR SINE MIR -50 212 79 22 70 0 0 chrX 149260419 149260462 -13339468 + AT_rich Low_complexity Low_complexity 1 43 0 316 275 50 60 chrX 149260540 149260722 -13339208 - L1ME3A LINE L1 0 6170 5991 * 3062 198 55 16 chrX 149260707 149260997 -13338933 - L1MA8 LINE L1 -205 6086 5809 423 0 0 0 chrX 149260997 149261044 -13338886 + (TG)n Simple_repeat Simple_repeat 2 48 0 3062 198 55 16 chrX 149261044 149261511 -13338419 - L1MA8 LINE L1 -482 5809 5294 2144 123 45 31 chrX 149261572 149261931 -13337999 + THE1B LTR MaLR 1 364 0 449 323 52 38 chrX 149262103 149262954 -13336976 - L1ME3A LINE L1 -339 5782 4918 389 263 117 6 chrX 149263031 149263210 -13336720 + Charlie2 DNA MER1_type 2647 2845 -17 286 354 21 21 chrX 149263849 149263993 -13335937 + MER117 DNA MER1_type 15 158 -39 11640 208 14 9 chrX 149264178 149267594 -13332336 - L1PA13 LINE L1 -4 6159 2713 217 277 15 31 chrX 149268673 149268738 -13331192 + MIR3 SINE MIR 112 175 -33 340 191 123 49 chrX 149269677 149269839 -13330091 + MER96B DNA MER1_type? 1 174 -243 192 152 0 0 chrX 149270078 149270111 -13329819 + (TA)n Simple_repeat Simple_repeat 1 33 0 291 260 0 27 chrX 149270154 149270227 -13329703 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 335 272 24 12 chrX 149270227 149270396 -13329534 + (TATATG)n Simple_repeat Simple_repeat 4 174 0 232 271 0 62 chrX 149270456 149270552 -13329378 - L1MC4 LINE L1 -1339 6703 6614 252 337 0 0 chrX 149270561 149270650 -13329280 + L1MC4 LINE L1 6615 6703 -1339 243 227 68 45 chrX 149270668 149270756 -13329174 + L1MC4 LINE L1 6614 6703 -1339 200 243 0 29 chrX 149270760 149270830 -13329100 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 239 265 121 0 chrX 149270859 149270942 -13328988 + L1MC4 LINE L1 6611 6703 -1339 231 344 0 0 chrX 149270964 149271054 -13328876 + L1MC4 LINE L1 6614 6703 -1339 229 245 0 82 chrX 149271052 149271150 -13328780 - L1MC4 LINE L1 -1339 6703 6614 * 230 256 13 0 chrX 149271150 149271228 -13328702 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 235 284 23 0 chrX 149271229 149271317 -13328613 + L1MC4 LINE L1 6614 6703 -1339 * 244 250 29 0 chrX 149271297 149271365 -13328565 - L1MC4 LINE L1 -1339 6703 6634 231 299 65 9 chrX 149271956 149272063 -13327867 - L2 LINE L2 -214 3058 2946 378 0 0 0 chrX 149273708 149273750 -13326180 + (TG)n Simple_repeat Simple_repeat 2 43 0 520 245 20 95 chrX 149274206 149274406 -13325524 - MIR3 SINE MIR -22 186 2 2286 58 0 39 chrX 149274565 149274875 -13325055 - AluY SINE Alu -10 301 4 1225 238 150 40 chrX 149274966 149275420 -13324510 - MLT1D LTR MaLR -1 504 1 390 253 90 6 chrX 149275683 149275849 -13324081 - L1ME4a LINE L1 -1 6120 5941 676 234 68 40 chrX 149275897 149276163 -13323767 - L1ME4a LINE L1 -152 5969 5694 428 282 145 22 chrX 149276751 149276978 -13322952 - MIR SINE MIR -5 257 3 514 340 22 22 chrX 149277947 149278132 -13321798 - L3 LINE CR1 -117 1460 1276 784 291 22 9 chrX 149278193 149278416 -13321514 - MIR SINE MIR 0 262 37 391 232 40 0 chrX 149278728 149278827 -13321103 + HAL1 LINE L1 809 911 -1596 2630 182 49 24 chrX 149279259 149279791 -13320139 - L1PA16 LINE L1 -10 6156 5612 646 112 0 10 chrX 149279792 149279890 -13320040 + MER4A LTR ERV1 1 97 -567 1835 130 3 51 chrX 149279890 149280252 -13319678 + MER4A LTR ERV1 262 664 0 2512 118 41 34 chrX 149280255 149280873 -13319057 + MER4A-int LTR ERV1 1 804 -5794 1438 252 61 8 chrX 149280944 149281305 -13318625 + MER4A-int LTR ERV1 1845 2224 -4107 4118 178 55 57 chrX 149281327 149282280 -13317650 + MER4A-int LTR ERV1 198 1353 -433 417 39 0 0 chrX 149282280 149282331 -13317599 + (TG)n Simple_repeat Simple_repeat 2 52 0 4118 178 55 57 chrX 149282331 149282360 -13317570 + MER4A-int LTR ERV1 1353 1381 -405 4182 94 60 11 chrX 149282367 149283071 -13316859 + MER4A-int LTR ERV1 1756 2493 -4105 1760 184 82 22 chrX 149282768 149283154 -13316776 + LTR57-int LTR ERVL 993 1413 -3930 * 3390 153 76 49 chrX 149283154 149283827 -13316103 - LTR8 LTR ERV1 0 691 1 13555 140 96 41 chrX 149283827 149284245 -13315685 + MER4A-int LTR ERV1 2737 3131 -3467 1760 184 82 22 chrX 149283827 149283902 -13316028 + LTR57-int LTR ERVL 1413 1482 -3861 * 1153 35 0 0 chrX 149284245 149284386 -13315544 + L1PA6 LINE L1 6011 6151 -3 13555 140 96 41 chrX 149284386 149284646 -13315284 + MER4A-int LTR ERV1 3131 3375 -3223 2560 33 0 3 chrX 149284646 149284949 -13314981 - AluY SINE Alu -9 302 1 13555 140 96 41 chrX 149284949 149287940 -13311990 + MER4A-int LTR ERV1 3375 6596 -2 672 73 0 21 chrX 149287946 149288042 -13311888 + MER4A LTR ERV1 1 94 -570 1826 140 11 16 chrX 149288043 149288393 -13311537 + MER4A LTR ERV1 258 664 0 1970 195 36 2 chrX 149288397 149289125 -13310805 - L1P4 LINE L1 -557 5609 4864 274 211 20 13 chrX 149289567 149289719 -13310211 + (TA)n Simple_repeat Simple_repeat 1 153 0 623 224 0 27 chrX 149289904 149290051 -13309879 + MER3 DNA MER1_type 5 147 -62 265 359 28 14 chrX 149290189 149290334 -13309596 + MIR3 SINE MIR 11 157 -51 557 317 10 9 chrX 149290603 149290788 -13309142 - MIR SINE MIR -63 145 2 11538 96 4 0 chrX 149292466 149294856 -13305074 - L1PA8 LINE L1 -4 6168 3749 354 262 56 24 chrX 149295401 149295527 -13304403 + L2 LINE L2 2668 2797 -517 284 266 153 32 chrX 149295543 149295667 -13304263 + MER5B DNA MER1_type 10 148 -30 25 31 0 0 chrX 149295962 149295994 -13303936 + AT_rich Low_complexity Low_complexity 1 32 0 892 334 111 57 chrX 149295994 149296238 -13303692 + L3 LINE CR1 680 909 -668 896 223 5 31 chrX 149296238 149296431 -13303499 - MER5A DNA MER1_type 0 189 2 892 334 111 57 chrX 149296431 149297031 -13302899 + L3 LINE CR1 909 1570 -7 206 323 15 0 chrX 149298295 149298360 -13301570 - MIR3 SINE MIR -12 196 131 251 114 0 0 chrX 149298369 149298413 -13301517 + L1PA6 LINE L1 6111 6154 0 232 284 0 15 chrX 149298453 149298520 -13301410 + MLT1G LTR MaLR 308 373 -217 387 0 0 0 chrX 149298560 149298603 -13301327 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 243 0 0 0 chrX 149298615 149298642 -13301288 + (TA)n Simple_repeat Simple_repeat 2 28 0 377 315 18 0 chrX 149298769 149298880 -13301050 - MER81 DNA DNA -1 113 1 201 233 0 0 chrX 149299011 149299054 -13300876 + CT-rich Low_complexity Low_complexity 3 45 0 1512 174 17 35 chrX 149299091 149299404 -13300526 + AluJo SINE Alu 1 308 0 559 208 31 173 chrX 149299408 149299726 -13300204 - L2 LINE L2 -12 3301 3029 308 219 0 16 chrX 149300087 149300151 -13299779 + L2 LINE L2 3251 3313 0 536 309 67 22 chrX 149300179 149300448 -13299482 + L2 LINE L2 3013 3293 -20 340 352 140 11 chrX 149300502 149300766 -13299164 + L2 LINE L2 2550 2847 -467 1324 296 123 12 chrX 149300845 149301678 -13298252 + L2 LINE L2 2396 3313 0 572 299 85 0 chrX 149302002 149302166 -13297764 - MER45A DNA AcHobo 0 178 1 522 298 123 58 chrX 149303745 149304280 -13295650 + L2 LINE L2 2706 3265 -7 298 317 37 0 chrX 149304301 149304383 -13295547 + L3 LINE CR1 1381 1465 -112 277 291 71 31 chrX 149304537 149304664 -13295266 - MIR SINE MIR -43 219 88 493 280 30 12 chrX 149306081 149306249 -13293681 + MIR SINE MIR 80 250 -12 269 238 83 12 chrX 149306876 149306960 -13292970 - MIR SINE MIR -117 145 56 317 311 68 38 chrX 149307039 149307171 -13292759 + L2 LINE L2 3137 3272 0 278 65 0 22 chrX 149307362 149307408 -13292522 + (CA)n Simple_repeat Simple_repeat 1 45 0 338 330 191 16 chrX 149308866 149309305 -13290625 + L2 LINE L2 1985 2500 -814 2264 170 26 19 chrX 149309313 149309743 -13290187 + Tigger2a DNA MER2_type 1 433 -1 2275 297 87 40 chrX 149309744 149310580 -13289350 - L1MEc LINE L1 -4393 2003 1208 2337 81 7 3 chrX 149310580 149310877 -13289053 - AluSc SINE Alu -11 298 1 2275 297 87 40 chrX 149310877 149311901 -13288029 - L1MEc LINE L1 -5188 1208 55 205 274 16 0 chrX 149312065 149312127 -13287803 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 378 291 160 7 chrX 149312161 149312602 -13287328 - L1MC4 LINE L1 -165 7877 7261 2338 86 0 46 chrX 149313179 149313503 -13286427 + AluSc SINE Alu 1 309 0 1212 100 0 0 chrX 149314162 149314442 -13285488 + (TA)n Simple_repeat Simple_repeat 1 280 0 1128 177 0 30 chrX 149314498 149314701 -13285229 - AluJb SINE Alu -30 282 86 30 69 0 0 chrX 149315258 149315316 -13284614 + AT_rich Low_complexity Low_complexity 1 58 0 354 98 0 0 chrX 149315709 149315760 -13284170 + (CA)n Simple_repeat Simple_repeat 2 52 0 2176 222 49 44 chrX 149316112 149316981 -13282949 + L1ME1 LINE L1 5181 6161 -5 704 165 0 0 chrX 149317041 149317162 -13282768 + FLAM_A SINE Alu 21 141 -1 1064 197 34 21 chrX 149318758 149318949 -13280981 - MLT1D LTR MaLR -16 489 293 2104 86 68 0 chrX 149318949 149319227 -13280703 + AluSg SINE Alu 1 297 -13 1064 197 34 21 chrX 149319227 149319268 -13280662 - MLT1D LTR MaLR -212 293 254 1418 192 18 15 chrX 149319282 149319585 -13280345 + MER61B LTR ERV1 1 396 -28 3264 146 41 55 chrX 149319597 149320006 -13279924 + MER61B-int LTR ERV1 3 416 -4801 207 0 0 0 chrX 149320006 149320029 -13279901 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3264 146 41 55 chrX 149320029 149320417 -13279513 + MER61B-int LTR ERV1 416 840 -4377 1819 119 65 0 chrX 149320417 149320598 -13279332 + MER61B-int LTR ERV1 958 1167 -4050 183 42 0 0 chrX 149320598 149320622 -13279308 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1819 119 65 0 chrX 149320622 149320733 -13279197 + MER61B-int LTR ERV1 1167 1269 -3948 26011 95 27 14 chrX 149320742 149324516 -13275414 + MER61B-int LTR ERV1 1393 5216 -1 1286 187 14 56 chrX 149324539 149324823 -13275107 + MER61B LTR ERV1 125 396 -29 1081 212 43 0 chrX 149324852 149325083 -13274847 - MLT1D LTR MaLR -263 242 2 398 108 15 0 chrX 149325755 149325820 -13274110 + (CA)n Simple_repeat Simple_repeat 2 67 0 249 270 74 20 chrX 149325995 149326143 -13273787 - L1P4 LINE L1 -303 5818 5666 5399 230 58 22 chrX 149327164 149330899 -13269031 + L1PB3 LINE L1 3 3063 -3799 1927 152 0 0 chrX 149330899 149331176 -13268754 + AluSx SINE Alu 1 277 -35 5399 230 58 22 chrX 149331176 149332582 -13267348 + L1PB3 LINE L1 3063 4416 -2446 956 265 45 31 chrX 149332552 149332907 -13267023 + L1PB3 LINE L1 5589 5948 -914 * 1653 166 60 38 chrX 149332914 149333281 -13266649 - THE1C LTR MaLR 0 375 1 5825 143 156 43 chrX 149333281 149334468 -13265462 - THE1C-int LTR MaLR 0 1580 260 1514 171 45 55 chrX 149334468 149334847 -13265083 - THE1C LTR MaLR 0 375 1 8401 156 57 16 chrX 149334847 149336364 -13263566 - THE1C-int LTR MaLR 0 1580 4 1797 166 15 59 chrX 149336367 149336521 -13263409 - THE1C LTR MaLR 0 375 216 2101 123 10 7 chrX 149336521 149336829 -13263101 + AluSp SINE Alu 2 310 -3 1797 166 15 59 chrX 149336829 149337066 -13262864 - THE1C LTR MaLR -159 216 1 1496 134 16 0 chrX 149337070 149337324 -13262606 - THE1C-int LTR MaLR -1320 260 3 1554 186 64 25 chrX 149337326 149337687 -13262243 - THE1C LTR MaLR 0 375 1 4862 136 14 43 chrX 149337687 149338599 -13261331 + L1PB3 LINE L1 5951 6837 -33 2255 70 0 7 chrX 149338599 149338933 -13260997 + AluY SINE Alu 1 332 0 4862 136 14 43 chrX 149338933 149338966 -13260964 + L1PB3 LINE L1 6837 6869 -1 238 227 159 23 chrX 149339402 149339490 -13260440 - L2 LINE L2 -5 3308 3209 22 0 0 0 chrX 149339723 149339745 -13260185 + AT_rich Low_complexity Low_complexity 1 22 0 5272 90 16 4 chrX 149340667 149341424 -13258506 + MER4E LTR ERV1 1 766 0 4554 109 12 26 chrX 149341424 149342158 -13257772 + MER4E-int LTR ERV1 1 724 -6034 2075 189 44 16 chrX 149344178 149344659 -13255271 + HUERS-P3 LTR ERV1 129 583 -4064 353 313 56 60 chrX 149345326 149345833 -13254097 + HUERS-P3 LTR ERV1 3374 5131 -2918 778 318 21 24 chrX 149346425 149346847 -13253083 + HUERS-P3 LTR ERV1 2138 2558 -2089 219 36 0 0 chrX 149349392 149349420 -13250510 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 244 364 115 41 chrX 149349681 149350123 -13249807 + L2 LINE L2 2281 2755 -559 345 289 179 13 chrX 149350368 149350524 -13249406 + MER5A DNA MER1_type 1 182 -7 372 94 0 0 chrX 149351299 149351316 -13248614 + (CA)n Simple_repeat Simple_repeat 1 70 0 372 94 0 0 chrX 149351316 149351369 -13248561 + (CA)n Simple_repeat Simple_repeat 2 54 0 2447 125 6 6 chrX 149351799 149352159 -13247771 + THE1B LTR MaLR 3 362 -2 187 400 0 13 chrX 149352296 149352371 -13247559 - MIR SINE MIR -104 104 31 21100 177 21 29 chrX 149352731 149355301 -13244629 - L1PA10 LINE L1 -1 6482 3892 2735 145 18 28 chrX 149355301 149355798 -13244132 - LTR22B LTR ERVK 0 492 1 21100 177 21 29 chrX 149355798 149357538 -13242392 - L1PA10 LINE L1 -2591 3892 2139 2368 109 0 0 chrX 149357538 149357849 -13242081 - AluY SINE Alu 0 311 1 21100 177 21 29 chrX 149357849 149359996 -13239934 - L1PA10 LINE L1 -4344 2139 80 9688 213 38 20 chrX 149359993 149362416 -13237514 + L1M1 LINE L1 606 2794 -4771 * 2320 213 25 2 chrX 149362422 149363017 -13236913 + L1M1 LINE L1 4293 4901 -2664 305 234 0 13 chrX 149363017 149363094 -13236836 + MLT1C LTR MaLR 392 467 0 189 313 36 0 chrX 149363094 149363177 -13236753 - MIR SINE MIR -51 211 126 246 330 11 11 chrX 149363254 149363348 -13236582 - MIR SINE MIR -138 124 31 2783 10 0 0 chrX 149363676 149363976 -13235954 + AluYb8 SINE Alu 15 314 -4 195 336 84 9 chrX 149364477 149364584 -13235346 + MIR SINE MIR 110 224 -38 * 231 253 107 0 chrX 149364566 149364641 -13235289 + MIR3 SINE MIR 88 170 -38 1854 146 4 4 chrX 149365304 149365584 -13234346 + AluSg SINE Alu 1 280 -30 1262 294 80 28 chrX 149365756 149365991 -13233939 - L2 LINE L2 0 3313 3092 1778 120 78 31 chrX 149365991 149366349 -13233581 - THE1C LTR MaLR 0 375 1 1262 294 80 28 chrX 149366349 149366592 -13233338 - L2 LINE L2 -221 3092 2863 540 0 0 0 chrX 149366592 149366652 -13233278 + (TG)n Simple_repeat Simple_repeat 2 61 0 378 0 0 0 chrX 149366651 149366693 -13233237 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 1262 294 80 28 chrX 149366652 149366968 -13232962 - L2 LINE L2 -450 2863 2526 262 333 156 28 chrX 149367859 149368000 -13231930 + MER91A DNA MER1_type 9 167 -29 391 283 81 29 chrX 149368113 149368286 -13231644 - MER5A DNA MER1_type -6 183 2 262 339 16 71 chrX 149368450 149368577 -13231353 + MER5A DNA MER1_type 13 132 -57 669 239 36 52 chrX 149368579 149368830 -13231100 - HAL1 LINE L1 -716 1791 1545 976 286 49 49 chrX 149368891 149369904 -13230026 - L1MEc LINE L1 -4569 2256 1078 295 209 30 0 chrX 149369934 149370001 -13229929 - L1ME1 LINE L1 -47 6119 6051 1216 266 81 40 chrX 149370062 149370644 -13229286 - L1ME2 LINE L1 -116 6048 5443 390 340 53 24 chrX 149370777 149371153 -13228777 - L1MEc LINE L1 -5969 856 470 530 248 109 60 chrX 149371170 149371602 -13228328 - HAL1 LINE L1 -1071 1436 984 251 194 32 0 chrX 149371696 149371758 -13228172 - L1M4b LINE L1 -4320 2818 2755 344 309 36 10 chrX 149372176 149372370 -13227560 - L1M4b LINE L1 -4574 2564 2366 2160 133 69 5 chrX 149372375 149372795 -13227135 - L1MA3 LINE L1 -6 7718 7272 7138 192 7 6 chrX 149372799 149374375 -13225555 - L1MA3 LINE L1 -857 6708 5132 3841 153 7 31 chrX 149374376 149375210 -13224720 - L1MA3 LINE L1 -3995 3570 2757 1670 108 111 0 chrX 149375211 149375518 -13224412 - L1MA3 LINE L1 -5079 2486 2146 614 276 22 13 chrX 149375528 149375753 -13224177 - L1M4b LINE L1 -4722 2237 2011 534 135 10 10 chrX 149375781 149375877 -13224053 + MER4A LTR ERV1 3 98 -566 1226 180 20 33 chrX 149375877 149376227 -13223703 + MER4A LTR ERV1 261 664 0 4231 233 55 18 chrX 149376234 149377659 -13222271 - L1M4b LINE L1 -4879 1976 520 1429 132 9 131 chrX 149377689 149378049 -13221881 - L1M2 LINE L1 -470 5821 5505 2347 84 35 89 chrX 149378070 149378497 -13221433 - MER4A LTR ERV1 0 664 261 669 101 0 10 chrX 149378497 149378596 -13221334 - MER4A LTR ERV1 -566 98 1 468 120 0 0 chrX 149378596 149378671 -13221259 - L1M2 LINE L1 -893 5407 5333 3459 238 37 11 chrX 149378698 149379515 -13220415 - MER21B LTR ERV1 -5 858 21 1446 204 53 18 chrX 149379691 149380181 -13219749 - L1 LINE L1 -777 5369 4890 271 279 97 0 chrX 149380174 149380328 -13219602 - L1 LINE L1 -1608 4538 4370 * 369 186 50 25 chrX 149380358 149380519 -13219411 + (TA)n Simple_repeat Simple_repeat 2 166 0 1967 180 14 28 chrX 149381382 149381809 -13218121 + L1MB2 LINE L1 5444 5864 -319 1124 255 15 50 chrX 149381811 149382222 -13217708 + MSTB2 LTR MaLR 2 457 0 1075 218 61 3 chrX 149382222 149382516 -13217414 + L1MB2 LINE L1 5861 6171 0 618 242 59 0 chrX 149382763 149382916 -13217014 + MIR SINE MIR 75 236 -26 3867 30 8 6 chrX 149382934 149383404 -13216526 + L1PA5 LINE L1 5683 6153 -1 1740 174 18 0 chrX 149383753 149384029 -13215901 + AluSx SINE Alu 1 281 -31 327 49 0 0 chrX 149384038 149384079 -13215851 + (TAA)n Simple_repeat Simple_repeat 1 41 0 276 285 65 32 chrX 149384821 149384944 -13214986 - MIR3 SINE MIR -14 194 68 475 241 36 0 chrX 149385217 149385354 -13214576 + L1MCa LINE L1 64 205 -6221 5064 101 151 151 chrX 149385360 149387051 -13212879 + pTR5 LTR ERV1 743 2437 -1 5104 186 70 48 chrX 149387051 149388349 -13211581 + L1MCa LINE L1 202 1528 -4898 352 229 36 64 chrX 149388329 149388469 -13211461 + L1MA1 LINE L1 12 147 -7418 * 12657 182 43 19 chrX 149388447 149388542 -13211388 + L1MA1 LINE L1 1103 1194 -6371 4043 86 12 0 chrX 149388542 149389100 -13210830 - L1PA7 LINE L1 -1 6153 5589 12657 182 43 19 chrX 149389100 149390334 -13209596 + L1MA1 LINE L1 1194 2397 -5168 198 0 0 0 chrX 149390334 149390356 -13209574 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 12657 182 43 19 chrX 149390356 149392622 -13207308 + L1MA1 LINE L1 2397 5670 -1895 1976 139 41 46 chrX 149392622 149392988 -13206942 - THE1B LTR MaLR 0 364 1 6240 155 17 18 chrX 149392988 149393168 -13206762 + L1MA1 LINE L1 5666 5845 -1876 4226 88 7 8 chrX 149393168 149393756 -13206174 - LTR14C LTR ERVK 0 587 1 6240 155 17 18 chrX 149393756 149395358 -13204572 + L1MA1 LINE L1 5845 7449 -272 1503 136 232 20 chrX 149395358 149395711 -13204219 - MSTA LTR MaLR 0 428 1 6240 155 17 18 chrX 149395711 149395984 -13203946 + L1MA1 LINE L1 7449 7721 0 22 0 0 0 chrX 149395984 149396006 -13203924 + AT_rich Low_complexity Low_complexity 1 22 0 542 193 0 0 chrX 149396006 149396115 -13203815 + L1MCa LINE L1 1497 1605 -4821 436 169 86 8 chrX 149396146 149396264 -13203666 + L1MB3 LINE L1 6044 6182 -1 339 236 0 0 chrX 149396283 149396355 -13203575 + L1MB8 LINE L1 6101 6172 -6 2709 234 60 13 chrX 149397575 149398868 -13201062 - Charlie1a DNA MER1_type 0 1455 17 441 0 0 0 chrX 149398873 149398922 -13201008 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 230 203 14 43 chrX 149398924 149398993 -13200937 + (TA)n Simple_repeat Simple_repeat 2 68 0 1366 293 76 2 chrX 149399180 149399603 -13200327 - LTR16B LTR ERVL -4 460 7 22 0 0 0 chrX 149400342 149400364 -13199566 + AT_rich Low_complexity Low_complexity 1 22 0 205 348 0 22 chrX 149400498 149400587 -13199343 - MIR SINE MIR -67 141 55 697 295 36 36 chrX 149401520 149401825 -13198105 - MLT1I LTR MaLR 0 409 105 480 35 0 0 chrX 149401979 149402037 -13197893 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 361 106 24 chrX 149402064 149402272 -13197658 - L3 LINE CR1 -58 1519 1295 1060 206 4 74 chrX 149402273 149402530 -13197400 + MER8 DNA MER2_type 1 239 0 451 326 156 13 chrX 149402633 149402857 -13197073 - L3 LINE CR1 -294 1283 1028 1961 218 116 2 chrX 149403073 149403522 -13196408 - MLT1D LTR MaLR -5 500 1 447 304 98 9 chrX 149403570 149403784 -13196146 - LTR67 LTR ERVL 0 557 325 2058 220 84 18 chrX 149403998 149404498 -13195432 - MLT2B3 LTR ERVL -21 533 1 279 0 0 0 chrX 149404602 149404633 -13195297 + (A)n Simple_repeat Simple_repeat 1 31 0 898 297 70 22 chrX 149404740 149405110 -13194820 + L2 LINE L2 2921 3308 -5 378 306 32 45 chrX 149405115 149405272 -13194658 + MIR SINE MIR 3 157 -105 1958 133 14 107 chrX 149405418 149405838 -13194092 + Tigger2a DNA MER2_type 1 381 -53 1378 100 9 5 chrX 149405861 149406071 -13193859 - L1PA8A LINE L1 -32 6099 5889 418 224 0 0 chrX 149406071 149406138 -13193792 + Tigger2a DNA MER2_type 377 443 -1 220 260 27 0 chrX 149406406 149406479 -13193451 + (TA)n Simple_repeat Simple_repeat 2 76 0 273 299 122 0 chrX 149406622 149406729 -13193201 + L1ME LINE L1 5566 5685 -436 23 33 0 0 chrX 149406752 149406782 -13193148 + AT_rich Low_complexity Low_complexity 1 30 0 4583 230 27 25 chrX 149406856 149407846 -13192084 - L1MB8 LINE L1 -2 6176 5189 1239 151 48 4 chrX 149407846 149408097 -13191833 - L1MA2 LINE L1 0 6304 6043 4583 230 27 25 chrX 149408097 149408737 -13191193 - L1MB8 LINE L1 -989 5189 4545 2138 157 11 24 chrX 149408737 149409106 -13190824 - THE1B LTR MaLR 0 364 1 4583 230 27 25 chrX 149409106 149409638 -13190292 - L1MB8 LINE L1 -1633 4545 4015 245 204 0 0 chrX 149409636 149409685 -13190245 + L1MB8 LINE L1 3943 3991 -2155 * 628 323 71 47 chrX 149409695 149410231 -13189699 - L1MB8 LINE L1 -2229 3917 3369 423 0 0 0 chrX 149410815 149410862 -13189068 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 212 288 17 17 chrX 149411623 149411682 -13188248 - MER5A DNA MER1_type -18 171 113 * 241 310 0 0 chrX 149411630 149411688 -13188242 + MER5A DNA MER1_type 37 94 -95 265 207 0 17 chrX 149411694 149411752 -13188178 + MSTA LTR MaLR 1 57 -371 14061 205 25 12 chrX 149411760 149414007 -13185923 + L1M1 LINE L1 22 2318 -5247 2405 82 0 0 chrX 149414007 149414310 -13185620 + AluSg SINE Alu 3 305 -5 14061 205 25 12 chrX 149414310 149414925 -13185005 + L1M1 LINE L1 2318 2923 -4642 13909 195 20 7 chrX 149414922 149418879 -13181051 + L1M1 LINE L1 3193 7202 -521 * 187 385 25 31 chrX 149419117 149419278 -13180652 - L2 LINE L2 -180 3092 2933 4574 191 22 29 chrX 149419456 149420672 -13179258 + L1MA9 LINE L1 5099 6312 0 639 382 14 12 chrX 149420799 149421226 -13178704 - L2 LINE L2 -854 2460 2033 290 289 62 0 chrX 149421480 149421577 -13178353 + MER20 DNA MER1_type 1 103 -116 1702 234 39 23 chrX 149421583 149422252 -13177678 + L1M4 LINE L1 4804 5476 -702 831 315 39 55 chrX 149423479 149424258 -13175672 - MLT1F1-int LTR MaLR -489 882 1 1056 236 61 51 chrX 149424258 149424588 -13175342 - MLT1F1 LTR MaLR 0 567 193 363 89 0 0 chrX 149424588 149424644 -13175286 + (CA)n Simple_repeat Simple_repeat 2 57 0 1056 236 61 51 chrX 149424644 149424817 -13175113 - MLT1F1 LTR MaLR -374 193 23 471 344 35 31 chrX 149425007 149425266 -13174664 + MIR SINE MIR 3 262 0 232 366 131 0 chrX 149426721 149426874 -13173056 - MIR3 SINE MIR -11 197 25 691 315 60 61 chrX 149427071 149427365 -13172565 + MLT1L LTR MaLR 1 294 -321 2241 93 0 46 chrX 149427365 149427688 -13172242 + AluSx SINE Alu 1 308 -4 691 315 60 61 chrX 149427688 149427911 -13172019 + MLT1L LTR MaLR 294 519 -96 873 230 10 0 chrX 149427911 149428120 -13171810 - L1MA8 LINE L1 -3 6288 6078 691 315 60 61 chrX 149428120 149428204 -13171726 + MLT1L LTR MaLR 519 602 -13 280 327 38 6 chrX 149428428 149428604 -13171326 - L1M2 LINE L1 -839 1844 1505 473 329 67 20 chrX 149428633 149428978 -13170952 - L1MEd LINE L1 -4863 1256 965 1803 65 0 0 chrX 149428984 149429216 -13170714 + L1PA10 LINE L1 5695 5926 -242 41 21 0 0 chrX 149429260 149429308 -13170622 + AT_rich Low_complexity Low_complexity 1 48 0 1245 241 34 62 chrX 149429717 149430382 -13169548 + L1MC5 LINE L1 6427 6939 -869 892 331 61 19 chrX 149430384 149430746 -13169184 + REP3 LTR ERV 3 379 -183 322 217 60 0 chrX 149430779 149430862 -13169068 + REP3 LTR ERV 434 521 -41 435 256 6 25 chrX 149430874 149431034 -13168896 + L1MC5 LINE L1 7083 7239 -722 2190 121 13 46 chrX 149431083 149431471 -13168459 + THE1C LTR MaLR 1 375 0 311 206 76 22 chrX 149431471 149431563 -13168367 + L1MB7 LINE L1 4170 4266 -1880 839 212 22 36 chrX 149431567 149431789 -13168141 + L1MC2 LINE L1 6115 6333 -11 464 277 36 0 chrX 149431790 149431956 -13167974 + L1MB7 LINE L1 4252 4423 -1723 1715 229 64 53 chrX 149431963 149433380 -13166550 + L1MB7 LINE L1 4640 6184 0 322 383 27 0 chrX 149433483 149433671 -13166259 + L1 LINE L1 3733 3925 -2221 256 280 99 57 chrX 149433686 149433897 -13166033 + L1MEd LINE L1 2 221 -5898 977 210 38 10 chrX 149434239 149434530 -13165400 + L1MA1 LINE L1 3050 3348 -2798 853 113 8 0 chrX 149434534 149434658 -13165272 + THE1C LTR MaLR 251 375 0 1622 225 32 74 chrX 149434699 149435161 -13164769 + L1M1 LINE L1 13 455 -7110 * 6684 137 4 25 chrX 149435157 149436262 -13163668 + L1MA1 LINE L1 4978 6049 -253 2245 89 30 3 chrX 149436262 149436566 -13163364 + AluSx SINE Alu 1 312 0 6684 137 4 25 chrX 149436566 149436815 -13163115 + L1MA1 LINE L1 6049 6302 0 6477 120 16 30 chrX 149436806 149437738 -13162192 + L1MA2 LINE L1 5152 6066 -238 * 2119 113 0 39 chrX 149437738 149438047 -13161883 + AluSp SINE Alu 1 297 -16 6477 120 16 30 chrX 149438047 149438283 -13161647 + L1MA2 LINE L1 6066 6304 0 2237 105 0 7 chrX 149438290 149438585 -13161345 - AluSx SINE Alu -19 293 1 47 33 0 0 chrX 149438594 149438655 -13161275 + AT_rich Low_complexity Low_complexity 1 61 0 395 256 75 19 chrX 149438695 149438855 -13161075 + L1MC5 LINE L1 7758 7926 -35 620 319 57 19 chrX 149438904 149439519 -13160411 + L1M4 LINE L1 4432 5069 -1077 1424 132 15 26 chrX 149439532 149439797 -13160133 - L1MA5 LINE L1 -1 6299 6038 489 17 0 0 chrX 149440105 149440163 -13159767 + (TA)n Simple_repeat Simple_repeat 2 59 0 228 225 34 22 chrX 149440208 149440297 -13159633 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 271 42 62 0 chrX 149440389 149440437 -13159493 + (CCCTG)n Simple_repeat Simple_repeat 3 53 0 437 143 0 22 chrX 149440448 149440539 -13159391 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 233 286 38 19 chrX 149440939 149441044 -13158886 + MER20 DNA MER1_type 113 219 0 * 249 271 8 2 chrX 149441044 149441167 -13158763 - MLT1L LTR MaLR -460 155 1 451 316 21 32 chrX 149441173 149441363 -13158567 - MIR SINE MIR -7 255 68 458 311 44 7 chrX 149442313 149442448 -13157482 + MIR SINE MIR 12 151 -111 180 0 0 0 chrX 149443436 149443456 -13156474 + (ATG)n Simple_repeat Simple_repeat 3 22 0 26 74 0 0 chrX 149443789 149443843 -13156087 + AT_rich Low_complexity Low_complexity 1 54 0 303 343 22 39 chrX 149444420 149444598 -13155332 - L2 LINE L2 -775 2539 2365 192 77 0 0 chrX 149444598 149444624 -13155306 + (GA)n Simple_repeat Simple_repeat 1 26 0 2145 148 23 31 chrX 149445176 149445568 -13154362 + MLT1B LTR MaLR 2 390 0 3303 176 11 27 chrX 149445580 149446280 -13153650 + L1MA10 LINE L1 5644 6332 -2 2035 148 0 0 chrX 149446611 149446901 -13153029 + AluSx SINE Alu 3 292 -20 874 133 3 237 chrX 149446964 149447302 -13152628 - L1P LINE L1 -3602 2544 2286 206 125 0 0 chrX 149447688 149447720 -13152210 - L2 LINE L2 0 3272 3241 226 276 0 0 chrX 149448641 149448699 -13151231 - MIR SINE MIR -132 130 73 1060 211 16 134 chrX 149448718 149449092 -13150838 + MLT1A2 LTR MaLR 40 369 -5 6988 260 88 53 chrX 149449525 149449615 -13150315 + L1M2 LINE L1 16 101 -6747 2182 138 6 8 chrX 149449615 149449971 -13149959 - THE1A LTR MaLR 0 355 1 6988 260 88 53 chrX 149449971 149452890 -13147040 + L1M2 LINE L1 101 2917 -3931 1923 145 7 0 chrX 149452890 149453200 -13146730 + AluSx SINE Alu 1 312 0 6988 260 88 53 chrX 149453200 149453330 -13146600 + L1M2 LINE L1 2917 3041 -3807 1587 208 7 3 chrX 149453330 149453619 -13146311 - AluJb SINE Alu -22 290 1 6988 260 88 53 chrX 149453619 149455537 -13144393 + L1M2 LINE L1 3041 5348 -1500 6507 118 16 171 chrX 149455563 149457165 -13142765 + L1P LINE L1 15 1368 -4778 6156 53 0 1 chrX 149457141 149458069 -13141861 + L1P2 LINE L1 4579 5505 -649 * 3978 150 8 30 chrX 149458069 149458130 -13141800 + L1PB4 LINE L1 5428 5489 -667 1989 113 11 25 chrX 149458130 149458413 -13141517 + AluSq SINE Alu 1 279 -34 180 0 0 0 chrX 149458413 149458433 -13141497 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3978 150 8 30 chrX 149458433 149459114 -13140816 + L1PB4 LINE L1 5487 6156 0 423 347 0 30 chrX 149459347 149459514 -13140416 + MER5B DNA MER1_type 17 178 0 368 262 40 7 chrX 149459861 149460010 -13139920 - MER103 DNA DNA -10 156 3 186 43 0 0 chrX 149460245 149460268 -13139662 + (TAA)n Simple_repeat Simple_repeat 1 23 0 238 65 22 22 chrX 149460360 149460406 -13139524 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 691 240 35 18 chrX 149460413 149460584 -13139346 - MIR SINE MIR -88 174 1 211 262 126 29 chrX 149461072 149461193 -13138737 - MIR SINE MIR -74 134 3 384 287 110 24 chrX 149461693 149461902 -13138028 + L1ME LINE L1 5526 5752 -369 217 130 20 100 chrX 149462292 149462392 -13137538 + T-rich Low_complexity Low_complexity 1 92 0 856 238 38 81 chrX 149462604 149462974 -13136956 + L2 LINE L2 2959 3312 -1 1867 165 7 89 chrX 149462988 149463413 -13136517 - MLT1B LTR MaLR 0 390 1 465 200 0 0 chrX 149464660 149464760 -13135170 - L1MA7 LINE L1 -3 6288 6189 1114 173 5 0 chrX 149464760 149464962 -13134968 - L1MA7 LINE L1 -380 5920 5718 319 349 12 82 chrX 149465790 149466045 -13133885 + L2 LINE L2 2923 3159 -113 5222 259 79 31 chrX 149466045 149467330 -13132600 - L1MCa LINE L1 -1214 5350 4128 304 68 339 0 chrX 149467330 149467389 -13132541 + MADE1 DNA Mariner 2 80 0 5222 259 79 31 chrX 149467389 149468025 -13131905 - L1MCa LINE L1 -2436 4128 3524 202 0 29 57 chrX 149468025 149468060 -13131870 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6253 24 0 0 chrX 149468062 149468784 -13131146 - L1PA3 LINE L1 -3 6152 5431 5222 259 79 31 chrX 149468784 149468930 -13131000 - L1MCa LINE L1 -3040 3524 3386 1289 232 62 25 chrX 149468930 149469288 -13130642 + MLT1A2 LTR MaLR 2 372 -2 5222 259 79 31 chrX 149469288 149469513 -13130417 - L1MCa LINE L1 -3178 3386 2943 521 244 24 21 chrX 149469542 149469782 -13130148 - L1MCa LINE L1 -3724 2840 2594 * 15061 219 18 13 chrX 149469781 149473151 -13126779 - L1PA15 LINE L1 -21 7582 4150 195 42 0 0 chrX 149473151 149473175 -13126755 + (TTG)n Simple_repeat Simple_repeat 1 24 0 15061 219 18 13 chrX 149473175 149475616 -13124314 - L1PA15 LINE L1 -3453 4150 1725 2937 249 109 56 chrX 149475615 149476783 -13123147 - L1MCa LINE L1 -4098 2647 1542 * 2227 118 0 0 chrX 149476783 149477087 -13122843 - AluSx SINE Alu -8 304 1 2937 249 109 56 chrX 149477087 149478261 -13121669 - L1MCa LINE L1 -5203 1542 134 2743 96 0 0 chrX 149478261 149478625 -13121305 - THE1B LTR MaLR 0 364 1 2937 249 109 56 chrX 149478625 149478712 -13121218 - L1MCa LINE L1 -6611 134 53 1474 267 26 21 chrX 149479228 149479880 -13120050 + L1ME1 LINE L1 2687 3341 -2805 3773 189 19 4 chrX 149479883 149480561 -13119369 + L1PA12 LINE L1 2 1500 -6081 2770 283 35 20 chrX 149480582 149481464 -13118466 + L1PA12 LINE L1 1043 1937 -5644 15781 231 12 8 chrX 149481521 149485557 -13114373 + L1PA12 LINE L1 2470 6524 -1060 541 264 0 71 chrX 149485554 149485808 -13114122 + L1ME1 LINE L1 3813 4048 -2098 * 1867 174 17 31 chrX 149485811 149485890 -13114040 + MLT2D LTR ERVL 9 88 -326 1541 192 7 17 chrX 149485890 149486208 -13113722 - AluJb SINE Alu 0 312 5 1867 174 17 31 chrX 149486208 149486479 -13113451 + MLT2D LTR ERVL 88 354 -60 222 37 0 0 chrX 149486502 149486529 -13113401 + (CA)n Simple_repeat Simple_repeat 2 28 0 3274 257 42 39 chrX 149486620 149488706 -13111224 + L1ME1 LINE L1 4078 6161 -5 2073 91 40 3 chrX 149488996 149489293 -13110637 - AluSx SINE Alu -4 308 1 190 212 0 0 chrX 149489873 149489906 -13110024 - L2 LINE L2 0 3272 3240 223 409 0 11 chrX 149490104 149490192 -13109738 - L2 LINE L2 -30 3242 3156 1743 206 22 6 chrX 149490236 149490595 -13109335 - MLT1A1 LTR MaLR 0 365 1 2081 209 43 0 chrX 149490599 149491019 -13108911 - MLT1A1-int LTR MaLR -4 1731 1294 222 118 0 0 chrX 149491056 149491090 -13108840 + (A)n Simple_repeat Simple_repeat 1 34 0 282 122 0 0 chrX 149491183 149491224 -13108706 + MLT1A2 LTR MaLR 1 41 -333 * 747 272 24 0 chrX 149491221 149491427 -13108503 - MER58 DNA MER1_type -2209 211 1 3350 136 70 3 chrX 149491852 149492497 -13107433 + L1M1 LINE L1 2901 3588 -3977 1776 219 91 50 chrX 149492945 149493562 -13106368 + LTR48B LTR ERV1 3 644 0 711 305 34 13 chrX 149494383 149494619 -13105311 - MIR SINE MIR -2 260 20 2240 89 6 19 chrX 149495347 149495662 -13104268 - AluY SINE Alu 0 311 1 2123 116 3 0 chrX 149495733 149496026 -13103904 + AluSx SINE Alu 1 294 -18 1213 196 13 13 chrX 149496511 149496827 -13103103 - L1M LINE L1 -829 5317 5008 343 252 41 27 chrX 149496891 149497038 -13102892 - L1M LINE L1 -2377 5408 5260 939 309 85 52 chrX 149497092 149497574 -13102356 - L2 LINE L2 -358 2956 2459 316 103 52 0 chrX 149497985 149498043 -13101887 + LTR48 LTR ERV1 672 732 -55 299 156 67 78 chrX 149498011 149498101 -13101829 + MER34 LTR ERV1 449 537 -5 * 2417 268 144 39 chrX 149498106 149498497 -13101433 - L2 LINE L2 -856 2458 2109 1430 155 59 25 chrX 149498497 149498819 -13101111 + L1MA8 LINE L1 5959 6291 0 2417 268 144 39 chrX 149498819 149499043 -13100887 - L2 LINE L2 -1205 2109 1910 3091 149 6 2 chrX 149499043 149499538 -13100392 + LOR1a LTR ERV1 1 497 0 2417 268 144 39 chrX 149499538 149500091 -13099839 - L2 LINE L2 -1404 1910 1166 280 296 9 28 chrX 149500275 149500383 -13099547 - HAL1 LINE L1 -1588 919 814 2264 81 7 3 chrX 149500530 149500825 -13099105 - AluSp SINE Alu -15 298 3 438 257 10 10 chrX 149500831 149500932 -13098998 - MER5B DNA MER1_type 0 178 78 2535 66 0 0 chrX 149500958 149501263 -13098667 + AluY SINE Alu 3 307 -4 788 280 72 67 chrX 149501466 149501912 -13098018 + LTR37B LTR ERV1 5 452 -16 2077 145 0 3 chrX 149503124 149503435 -13096495 + AluSx SINE Alu 1 310 -2 488 290 38 35 chrX 149503495 149503787 -13096143 - LTR16C LTR ERVL -4 487 84 24 0 0 0 chrX 149504261 149504285 -13095645 + AT_rich Low_complexity Low_complexity 1 24 0 1301 266 50 60 chrX 149504693 149504865 -13095065 - L1M4 LINE L1 -2095 4051 3879 5548 109 30 6 chrX 149504865 149505740 -13094190 + L1MA1 LINE L1 5404 6299 -3 1301 266 50 60 chrX 149505740 149506311 -13093619 - L1M4 LINE L1 -2267 3879 3316 2770 136 20 22 chrX 149506311 149506916 -13093014 + MER4E LTR ERV1 1 766 0 2177 245 59 75 chrX 149506916 149507173 -13092757 - L1M4 LINE L1 -2827 3319 3059 2445 132 18 42 chrX 149507173 149507620 -13092310 - L1MA1 LINE L1 0 6302 5867 2177 245 59 75 chrX 149507620 149508519 -13091411 - L1M4 LINE L1 -3087 3059 2182 495 168 79 0 chrX 149508557 149508658 -13091272 + MER57A LTR ERV1 295 403 0 3443 212 24 49 chrX 149508658 149509521 -13090409 + MER57A-int LTR ERV1 1 842 -6695 1909 134 13 67 chrX 149509599 149509973 -13089957 + MER4A LTR ERV1 1 354 -310 504 176 214 23 chrX 149510038 149510169 -13089761 + MER4C LTR ERV1 300 455 -10 751 200 148 67 chrX 149510183 149510728 -13089202 + MER4C-int LTR ERV1 1 673 -5925 320 314 33 41 chrX 149510750 149510871 -13089059 + MER4B-int LTR ERV1 369 488 -6270 303 183 0 33 chrX 149511088 149511148 -13088782 + MER4B-int LTR ERV1 751 808 -5790 2438 137 3 16 chrX 149511482 149511862 -13088068 - THE1C LTR MaLR 0 375 1 7861 162 38 32 chrX 149511862 149513433 -13086497 - THE1C-int LTR MaLR 0 1580 1 2423 133 5 5 chrX 149513433 149513808 -13086122 - THE1C LTR MaLR 0 375 1 12003 147 64 23 chrX 149516014 149518475 -13081455 - MER4A-int LTR ERV1 -222 6376 3815 4041 143 41 35 chrX 149518474 149519384 -13080546 - MER4A-int LTR ERV1 -2923 3675 2772 * 3751 143 37 51 chrX 149519384 149520085 -13079845 + LTR8 LTR ERV1 1 691 0 4041 143 41 35 chrX 149520085 149521473 -13078457 - MER4A-int LTR ERV1 -3826 2772 199 1190 237 83 21 chrX 149521496 149521834 -13078096 - MER4A-int LTR ERV1 -4119 2212 1854 2824 111 225 14 chrX 149521906 149522519 -13077411 - MER4A-int LTR ERV1 -5790 808 1 1786 119 49 17 chrX 149522521 149523057 -13076873 - MER4A LTR ERV1 0 664 1 1341 217 56 42 chrX 149523057 149523145 -13076785 + MER21B-int LTR ERV1 1272 1357 -2834 2345 146 3 3 chrX 149523145 149523509 -13076421 + THE1B LTR MaLR 1 364 0 1341 217 56 42 chrX 149523509 149523780 -13076150 + MER21B-int LTR ERV1 1357 1636 -2555 507 259 70 0 chrX 149523858 149524001 -13075929 + MER21B-int LTR ERV1 1638 1790 -2401 3186 256 48 5 chrX 149524083 149524852 -13075078 + MER21B-int LTR ERV1 1674 2475 -1716 561 52 0 0 chrX 149524867 149524944 -13074986 + (TA)n Simple_repeat Simple_repeat 1 77 0 6614 224 54 18 chrX 149524953 149526495 -13073435 + MER21B-int LTR ERV1 2548 4144 -47 639 238 26 126 chrX 149526572 149526841 -13073089 + MER21B LTR ERV1 3 244 -619 273 247 0 47 chrX 149526997 149527082 -13072848 + MER21A LTR ERV1 496 576 -355 10274 116 9 7 chrX 149527226 149529554 -13070376 + L1PA8A LINE L1 3797 6126 -5 665 115 57 16 chrX 149529597 149529719 -13070211 + LTR54 LTR ERV1 384 510 0 2356 77 7 0 chrX 149529803 149530101 -13069829 - AluY SINE Alu -11 300 1 368 376 68 24 chrX 149530312 149530682 -13069248 + L2 LINE L2 2218 2603 -711 369 265 59 0 chrX 149530731 149530833 -13069097 + MIR SINE MIR 9 116 -146 * 463 310 116 52 chrX 149530823 149531247 -13068683 + L2 LINE L2 2623 3074 -198 11846 187 53 34 chrX 149531932 149536072 -13063858 - L1MA1 LINE L1 -8 7713 3498 638 213 55 22 chrX 149536067 149536250 -13063680 - L1MA1 LINE L1 -7350 215 27 * 288 235 70 9 chrX 149536242 149536357 -13063573 + L1ME3A LINE L1 6040 6161 -9 * 369 356 8 0 chrX 149536706 149536838 -13063092 + L2 LINE L2 3181 3313 0 21 0 0 0 chrX 149536868 149536889 -13063041 + AT_rich Low_complexity Low_complexity 1 21 0 242 364 55 0 chrX 149538124 149538234 -13061696 + MIR3 SINE MIR 59 174 -34 29 47 0 0 chrX 149538299 149538342 -13061588 + AT_rich Low_complexity Low_complexity 1 43 0 1484 196 19 10 chrX 149538529 149538840 -13061090 + MLT1A1 LTR MaLR 52 365 0 181 222 89 0 chrX 149538985 149539030 -13060900 + MIR SINE MIR 203 251 -11 195 114 0 0 chrX 149539042 149539077 -13060853 + (TGG)n Simple_repeat Simple_repeat 3 37 0 468 241 38 15 chrX 149540171 149540304 -13059626 + MLT1E3 LTR MaLR 52 187 -406 7436 180 75 45 chrX 149540314 149541952 -13057978 - MER52A LTR ERV1 0 1755 68 263 260 13 13 chrX 149542395 149542472 -13057458 - MER52A LTR ERV1 -1678 77 1 1097 264 19 55 chrX 149542475 149542669 -13057261 + MLT1E3 LTR MaLR 199 398 -226 1924 134 11 14 chrX 149542669 149542978 -13056952 - AluSx SINE Alu 0 308 1 1097 264 19 55 chrX 149542978 149543180 -13056750 + MLT1E3 LTR MaLR 398 617 -7 927 204 32 36 chrX 149543596 149543816 -13056114 - MER20 DNA MER1_type 0 219 1 320 137 0 0 chrX 149544220 149544271 -13055659 - MER52A LTR ERV1 -1501 254 204 385 299 79 33 chrX 149545273 149545757 -13054173 - L1ME4a LINE L1 -104 6017 5512 225 65 0 0 chrX 149545930 149545961 -13053969 + (TG)n Simple_repeat Simple_repeat 2 32 0 549 330 120 50 chrX 149545962 149546909 -13053021 - L1ME4a LINE L1 -803 5343 4330 34 42 0 0 chrX 149547002 149547050 -13052880 + AT_rich Low_complexity Low_complexity 1 48 0 2477 138 36 14 chrX 149547058 149547477 -13052453 - MSTA LTR MaLR 0 428 1 184 227 0 0 chrX 149547692 149547736 -13052194 + L2 LINE L2 3262 3305 -8 776 174 28 94 chrX 149547919 149548131 -13051799 - MIR SINE MIR -43 219 22 183 42 0 0 chrX 149548958 149548982 -13050948 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 471 18 0 0 chrX 149548981 149549037 -13050893 + (TG)n Simple_repeat Simple_repeat 2 57 0 3469 266 32 16 chrX 149550484 149552118 -13047812 + L1M1 LINE L1 12 2353 -5212 12007 199 68 25 chrX 149552140 149552575 -13047355 + L1MA3 LINE L1 670 1085 -6639 2292 189 19 2 chrX 149552575 149552994 -13046936 - MSTB LTR MaLR 0 426 1 8342 199 15 7 chrX 149552994 149554633 -13045297 - MSTB-int LTR MaLR 0 1651 1 1994 214 24 5 chrX 149554635 149555047 -13044883 - MSTB LTR MaLR -2 424 5 12007 199 68 25 chrX 149555047 149557933 -13041997 + L1MA3 LINE L1 1085 3845 -3879 2484 60 0 0 chrX 149557933 149558233 -13041697 - AluY SINE Alu -11 300 1 12007 199 68 25 chrX 149558233 149561971 -13037959 + L1MA3 LINE L1 3845 7714 -10 1157 178 19 22 chrX 149561998 149562268 -13037662 + L1 LINE L1 4609 4877 -1269 2246 162 30 7 chrX 149562272 149562705 -13037225 - LTR47B LTR ERVL 0 443 1 1562 175 68 17 chrX 149563080 149563372 -13036558 - AluJb SINE Alu -5 307 1 260 374 24 27 chrX 149563568 149563862 -13036068 - LTR47B-int LTR ERVL -1841 4206 3914 379 339 55 30 chrX 149564156 149564392 -13035538 - LTR47B-int LTR ERVL -1907 3436 3195 665 340 33 30 chrX 149564453 149565065 -13034865 - LTR47B-int LTR ERVL -2851 2634 1854 346 310 13 32 chrX 149566851 149567009 -13032921 - LTR47B-int LTR ERVL -5174 169 15 2261 173 21 7 chrX 149567029 149567456 -13032474 - LTR47B LTR ERVL -6 437 5 3523 188 15 73 chrX 149567459 149567902 -13032028 + L1MA3 LINE L1 4876 5343 -962 1915 108 0 102 chrX 149567902 149568236 -13031694 + AluSx SINE Alu 1 300 -12 189 0 0 0 chrX 149568236 149568257 -13031673 + (TA)n Simple_repeat Simple_repeat 1 21 0 3523 188 15 73 chrX 149568257 149568761 -13031169 + L1MA3 LINE L1 5342 5729 -576 7760 19 0 0 chrX 149568761 149569839 -13030091 + L1PA3 LINE L1 5074 6151 -4 3523 188 15 73 chrX 149569839 149570295 -13029635 + L1MA3 LINE L1 5729 6210 -95 421 215 28 0 chrX 149570315 149570422 -13029508 + L1MA4 LINE L1 6185 6294 -6 180 77 0 0 chrX 149570424 149570450 -13029480 + (TA)n Simple_repeat Simple_repeat 1 26 0 275 0 29 0 chrX 149570467 149570502 -13029428 + (TG)n Simple_repeat Simple_repeat 2 37 0 879 266 38 15 chrX 149571107 149571370 -13028560 + L2 LINE L2 2442 2710 -604 1733 296 66 40 chrX 149571374 149572524 -13027406 + L1MEc LINE L1 48 1227 -5169 1228 278 62 33 chrX 149572528 149572590 -13027340 + L1MEc LINE L1 1249 1308 -5088 2105 126 0 0 chrX 149572590 149572883 -13027047 + AluSg SINE Alu 1 293 -17 1228 278 62 33 chrX 149572883 149573723 -13026207 + L1MEc LINE L1 1308 2225 -4171 1283 253 48 61 chrX 149573978 149574354 -13025576 + L2 LINE L2 2775 3148 -165 1834 178 11 32 chrX 149574354 149574724 -13025206 + MLT1A1 LTR MaLR 4 365 0 1283 253 48 61 chrX 149574724 149574885 -13025045 + L2 LINE L2 3148 3309 -4 704 273 81 49 chrX 149575135 149575483 -13024447 + L2 LINE L2 1894 2252 -1062 5163 229 48 8 chrX 149575534 149576726 -13023204 + ERVL LTR ERVL 2 1241 -4523 261 252 46 69 chrX 149576732 149576994 -13022936 - MER65A LTR ERV1 0 445 190 1874 194 60 61 chrX 149577093 149577614 -13022316 + MLT2B1 LTR ERVL 1 520 0 940 335 60 19 chrX 149577622 149578108 -13021822 + L2 LINE L2 2806 3311 -2 586 260 77 31 chrX 149579248 149579316 -13020614 + MER63A DNA MER1_type 6 69 -1619 2272 90 44 9 chrX 149579316 149579659 -13020271 + THE1A LTR MaLR 1 355 0 586 260 77 31 chrX 149579659 149579786 -13020144 + MER63A DNA MER1_type 69 210 0 447 252 16 32 chrX 149580221 149580344 -13019586 + L2 LINE L2 3191 3311 -2 914 110 7 0 chrX 149581003 149581148 -13018782 + MER4A LTR ERV1 1 146 -518 7722 230 19 7 chrX 149581148 149582898 -13017032 + L1PB4 LINE L1 31 1802 -5763 9938 114 32 40 chrX 149582919 149584509 -13015421 + THE1B-int LTR MaLR 1 1578 -2 2425 128 8 0 chrX 149584511 149584870 -13015060 + THE1B LTR MaLR 1 362 -2 2912 137 11 18 chrX 149584870 149585423 -13014507 + L1PB4 LINE L1 2433 2981 -4584 1359 209 24 0 chrX 149585416 149585756 -13014174 + L1PB4 LINE L1 4612 4959 -2606 * 962 175 14 12 chrX 149586140 149586361 -13013569 + L1MA4 LINE L1 5847 6057 -243 2964 151 44 75 chrX 149587230 149587596 -13012334 + L1PB4 LINE L1 6758 7134 -441 297 0 0 0 chrX 149587596 149587629 -13012301 + (TG)n Simple_repeat Simple_repeat 1 33 0 2964 151 44 75 chrX 149587629 149587641 -13012289 + L1PB4 LINE L1 7134 7145 -430 222 200 36 0 chrX 149587641 149587696 -13012234 + (TA)n Simple_repeat Simple_repeat 2 58 0 2964 151 44 75 chrX 149587696 149588099 -13011831 + L1PB4 LINE L1 7145 7568 -7 189 0 0 0 chrX 149589759 149589780 -13010150 + (A)n Simple_repeat Simple_repeat 1 21 0 201 262 0 0 chrX 149590834 149590876 -13009054 - L2 LINE L2 -90 3223 3182 727 272 107 82 chrX 149591368 149592174 -13007756 + HAL1 LINE L1 1567 2392 -115 912 50 100 0 chrX 149592188 149592308 -13007622 + AluYa5 SINE Alu 1 132 -179 278 237 52 21 chrX 149592722 149592819 -13007111 - MIR SINE MIR -50 212 113 352 275 0 0 chrX 149594427 149594507 -13005423 - L2 LINE L2 0 3313 3234 5054 178 47 53 chrX 149594520 149595541 -13004389 - L1PA16 LINE L1 -4 6162 5137 1621 166 12 35 chrX 149595541 149595860 -13004070 - AluSx SINE Alu 0 312 1 5054 178 47 53 chrX 149595860 149597022 -13002908 - L1PA16 LINE L1 -1029 5137 4015 901 161 12 0 chrX 149597236 149597404 -13002526 - L1MC3 LINE L1 -1 7784 7615 1446 122 50 29 chrX 149597406 149597644 -13002286 + THE1B LTR MaLR 122 364 0 3281 285 99 36 chrX 149597675 149598078 -13001852 - L1P5 LINE L1 -693 5458 5082 1765 183 43 3 chrX 149598078 149598428 -13001502 + THE1B LTR MaLR 1 364 0 9660 129 36 16 chrX 149598429 149599976 -12999954 + THE1B-int LTR MaLR 2 1580 0 2208 143 25 8 chrX 149599976 149600334 -12999596 + THE1B LTR MaLR 1 364 0 3281 285 99 36 chrX 149600334 149601496 -12998434 - L1P5 LINE L1 -1069 5082 3995 361 161 0 0 chrX 149601496 149601558 -12998372 - MLT1A1 LTR MaLR -4 361 300 3281 285 99 36 chrX 149601558 149602944 -12996986 - L1P5 LINE L1 -2156 3995 2246 508 185 13 5 chrX 149602946 149603059 -12996871 - MLT1A1 LTR MaLR 0 365 276 321 26 0 0 chrX 149603065 149603103 -12996827 + (CA)n Simple_repeat Simple_repeat 2 39 0 4302 140 50 28 chrX 149603107 149603814 -12996116 - L1PA15 LINE L1 -118 6047 5319 2048 110 36 0 chrX 149603814 149604095 -12995835 - AluSx SINE Alu -21 291 1 4302 140 50 28 chrX 149604095 149604210 -12995720 - L1PA15 LINE L1 -846 5319 5208 5673 144 35 44 chrX 149604216 149605330 -12994600 - MER4B-int LTR ERV1 -5460 1298 195 1251 255 54 11 chrX 149605360 149605713 -12994217 - MER4B-int LTR ERV1 -4119 2212 1845 344 130 11 87 chrX 149605749 149605841 -12994089 - MER4B-int LTR ERV1 -5763 835 751 2221 135 99 13 chrX 149605904 149606381 -12993549 - MER4B-int LTR ERV1 -6036 562 1 1902 189 3 0 chrX 149606384 149606723 -12993207 - MER4B LTR ERV1 0 610 271 560 244 152 0 chrX 149607080 149607244 -12992686 - MER5A DNA MER1_type 0 189 1 488 279 80 10 chrX 149607262 149607463 -12992467 + MER58C DNA MER1_type 1 215 0 1447 178 200 11 chrX 149608685 149609045 -12990885 + MSTA LTR MaLR 1 428 0 2642 134 7 0 chrX 149609047 149609458 -12990472 + MSTA-int LTR MaLR 3 416 -1164 420 248 43 43 chrX 149609477 149609638 -12990292 + L1MC4 LINE L1 7740 7900 -142 26 30 0 0 chrX 149609909 149609942 -12989988 + AT_rich Low_complexity Low_complexity 1 33 0 183 139 0 0 chrX 149611566 149611602 -12988328 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 24 85 0 0 chrX 149611662 149611721 -12988209 + AT_rich Low_complexity Low_complexity 1 59 0 271 322 120 48 chrX 149611890 149612182 -12987748 + L2 LINE L2 3000 3312 -1 5451 113 8 24 chrX 149612209 149613095 -12986835 + L1MA3 LINE L1 5434 6305 0 22 0 0 0 chrX 149613110 149613132 -12986798 + AT_rich Low_complexity Low_complexity 1 22 0 309 279 31 16 chrX 149613226 149613355 -12986575 + L1MEd LINE L1 1020 1150 -4969 364 313 109 50 chrX 149613366 149613705 -12986225 + HAL1 LINE L1 1316 1674 -833 498 275 8 8 chrX 149614074 149614194 -12985736 + L2 LINE L2 3189 3308 -5 1879 207 76 99 chrX 149614533 149615230 -12984700 + LTR68 LTR ERV1 6 686 -54 33 74 0 28 chrX 149615231 149615339 -12984591 + AT_rich Low_complexity Low_complexity 1 105 0 2156 116 0 3 chrX 149615482 149615785 -12984145 - AluSx SINE Alu -10 302 1 583 280 0 0 chrX 149616024 149616142 -12983788 + FLAM_A SINE Alu 1 118 -15 1488 208 66 14 chrX 149616161 149616508 -12983422 - MLT1A1 LTR MaLR 0 365 1 449 313 66 32 chrX 149616553 149617373 -12982557 + L1M4 LINE L1 3906 4753 -1393 2915 200 40 57 chrX 149617403 149618048 -12981882 + L1MA4 LINE L1 2 635 -4693 2308 42 0 0 chrX 149618054 149618337 -12981593 - L1PA5 LINE L1 -1 6153 5871 511 82 0 0 chrX 149618337 149618410 -12981520 + L1P LINE L1 3678 3750 -2396 305 242 0 0 chrX 149618408 149618544 -12981386 + L1MA4 LINE L1 627 794 -4534 * 8341 187 44 20 chrX 149618540 149619498 -12980432 + L1MA4 LINE L1 3596 4530 -1952 1950 116 0 34 chrX 149619498 149619812 -12980118 - AluSg SINE Alu 0 304 1 8341 187 44 20 chrX 149619812 149621650 -12978280 + L1MA4 LINE L1 4530 6475 -7 401 251 98 16 chrX 149621833 149622016 -12977914 + L1M4 LINE L1 5033 5230 -916 1290 136 5 0 chrX 149622479 149622678 -12977252 + L1P LINE L1 606 805 -5341 306 325 9 18 chrX 149622778 149622892 -12977038 + MER5A DNA MER1_type 58 170 -19 210 208 0 0 chrX 149623485 149623533 -12976397 + (CA)n Simple_repeat Simple_repeat 2 49 0 1447 234 40 47 chrX 149623536 149623643 -12976287 + MER97a DNA MER1_type? 186 292 -602 3666 113 0 4 chrX 149623643 149624172 -12975758 - MER1A DNA MER1_type 0 527 1 1447 234 40 47 chrX 149624172 149624192 -12975738 + MER97a DNA MER1_type? 292 311 -583 2167 37 7 0 chrX 149624192 149624462 -12975468 + L1PA4 LINE L1 5884 6155 0 1447 234 40 47 chrX 149624462 149624756 -12975174 + MER97a DNA MER1_type? 311 605 -289 508 270 109 31 chrX 149625060 149625353 -12974577 + MER97c DNA MER1_type? 775 1090 0 323 264 82 82 chrX 149625455 149625637 -12974293 + MLT1J2 LTR MaLR 267 448 -2 241 337 105 11 chrX 149625943 149626038 -12973892 + MIR SINE MIR 29 132 -76 254 241 0 35 chrX 149626043 149626130 -12973800 - LTR67 LTR ERVL -16 541 458 404 50 0 17 chrX 149626499 149626559 -12973371 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 211 221 174 35 chrX 149627047 149627133 -12972797 + MIR3 SINE MIR 68 165 -43 * 215 280 0 0 chrX 149627126 149627176 -12972754 + L2 LINE L2 3204 3253 -19 192 254 198 32 chrX 149627307 149627433 -12972497 - MIR SINE MIR -3 259 113 794 146 0 29 chrX 149627711 149627882 -12972048 + (TTCC)n Simple_repeat Simple_repeat 4 169 0 1845 211 28 35 chrX 149628106 149628537 -12971393 - MSTC LTR MaLR 0 428 1 1071 165 147 21 chrX 149628936 149629221 -12970709 + MER33 DNA MER1_type 4 324 0 310 341 24 16 chrX 149629671 149629797 -12970133 - MIR3 SINE MIR -37 171 45 22 0 0 0 chrX 149630431 149630453 -12969477 + AT_rich Low_complexity Low_complexity 1 22 0 4129 197 41 4 chrX 149630550 149631434 -12968496 - L1MB4 LINE L1 -6 6174 5260 27 29 0 0 chrX 149631775 149631809 -12968121 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chrX 149631846 149631875 -12968055 + AT_rich Low_complexity Low_complexity 1 29 0 718 289 39 0 chrX 149631960 149632164 -12967766 + MIR SINE MIR 37 248 -14 547 260 30 14 chrX 149632164 149632326 -12967604 - L1MC/D LINE L1 -524 5625 5487 371 262 68 65 chrX 149632438 149632701 -12967229 - L1MC/D LINE L1 -775 5354 5091 425 313 73 30 chrX 149632899 149633270 -12966660 - L1MC/D LINE L1 -1027 5102 4716 576 220 38 0 chrX 149633355 149633487 -12966443 - MIR SINE MIR -10 252 116 280 218 0 0 chrX 149633611 149633666 -12966264 + MIR SINE MIR 1 55 -207 351 332 94 47 chrX 149633805 149634124 -12965806 - L1MC/D LINE L1 -5738 381 48 2009 132 29 42 chrX 149634338 149634718 -12965212 + THE1C LTR MaLR 1 375 0 9219 141 45 7 chrX 149634718 149636241 -12963689 + THE1C-int LTR MaLR 1 1580 0 2052 116 37 45 chrX 149636241 149636619 -12963311 + THE1C LTR MaLR 1 375 0 297 229 184 9 chrX 149636982 149637091 -12962839 - MLT1L LTR MaLR -364 251 124 201 94 0 0 chrX 149637526 149637558 -12962372 + (TC)n Simple_repeat Simple_repeat 1 32 0 507 337 70 12 chrX 149638124 149638367 -12961563 - MIR SINE MIR -1 261 5 283 345 16 0 chrX 149638498 149638689 -12961241 - L1M4 LINE L1 -2145 5420 5227 2535 153 22 53 chrX 149638703 149639103 -12960827 + L1MB1 LINE L1 5418 5800 -368 2619 58 0 0 chrX 149639103 149639413 -12960517 + AluY SINE Alu 1 310 -1 2535 153 22 53 chrX 149639413 149639517 -12960413 + L1MB1 LINE L1 5800 5906 -262 441 271 13 33 chrX 149639636 149639787 -12960143 - MIR SINE MIR -44 218 71 223 281 114 35 chrX 149640570 149640684 -12959246 + MIR SINE MIR 138 260 -2 1160 230 31 43 chrX 149641541 149641600 -12958330 - MER63B DNA MER1_type -627 435 377 2185 121 0 3 chrX 149641600 149641897 -12958033 - AluSg SINE Alu -14 296 1 1160 230 31 43 chrX 149641897 149642215 -12957715 - MER63B DNA MER1_type -685 377 2 287 130 0 0 chrX 149642418 149642464 -12957466 - L1M4 LINE L1 -2334 5231 5186 1779 175 3 15 chrX 149642500 149642837 -12957093 - L1 LINE L1 -1113 6452 6120 4411 186 28 30 chrX 149642866 149643722 -12956208 + THE1-int LTR MaLR 427 1280 -300 8445 167 23 25 chrX 149643833 149645526 -12954404 - L1 LINE L1 -4305 3260 1572 3180 239 25 6 chrX 149645523 149646252 -12953678 - L1 LINE L1 -6814 751 9 * 877 228 31 7 chrX 149646264 149646558 -12953372 - L1M4 LINE L1 -3932 3633 3333 320 105 26 230 chrX 149646562 149646714 -12953216 + L1MA8 LINE L1 6170 6290 -1 231 274 48 6 chrX 149646707 149646875 -12953055 + L1M4 LINE L1 2944 3118 -3028 * 419 262 28 0 chrX 149648023 149648130 -12951800 + LTR25 LTR ERV1 244 353 -441 234 196 0 39 chrX 149648204 149648255 -12951675 + MER61E LTR ERV1 117 165 -404 923 214 51 5 chrX 149648296 149648511 -12951419 + MER61E LTR ERV1 341 565 -4 302 342 103 7 chrX 149648940 149649095 -12950835 + L2 LINE L2 3103 3272 0 315 311 17 17 chrX 149649129 149649248 -12950682 + MIR SINE MIR 20 138 -70 2233 98 16 10 chrX 149649387 149649692 -12950238 + AluSg SINE Alu 2 308 -2 1233 184 0 14 chrX 149649734 149649946 -12949984 - AluJb SINE Alu -19 293 85 1914 189 6 11 chrX 149649964 149650318 -12949612 - MER74C LTR ERVL -6 454 103 1998 108 7 17 chrX 149650361 149650657 -12949273 + AluSg1 SINE Alu 1 293 -16 228 185 0 0 chrX 149650801 149650855 -12949075 + A-rich Low_complexity Low_complexity 1 54 0 5979 152 13 13 chrX 149650891 149652092 -12947838 + L1MA3 LINE L1 5101 6305 0 237 200 60 20 chrX 149653953 149654053 -12945877 + Charlie7 DNA MER1_type 2434 2537 -75 196 304 80 45 chrX 149654083 149654195 -12945735 + L2 LINE L2 2594 2709 -605 484 328 32 24 chrX 149654231 149654478 -12945452 - LTR16A LTR ERVL -21 429 181 192 77 0 0 chrX 149654744 149654770 -12945160 + (T)n Simple_repeat Simple_repeat 1 26 0 1821 145 11 0 chrX 149655088 149655371 -12944559 + AluSp SINE Alu 1 286 -27 4476 219 35 87 chrX 149655577 149656782 -12943148 + L1PA15 LINE L1 1255 2521 -4276 9393 39 8 6 chrX 149656782 149658708 -12941222 + L1PA4 LINE L1 4235 6162 0 4476 219 35 87 chrX 149658708 149658917 -12941013 + L1PA15 LINE L1 2521 2739 -4058 1107 22 15 0 chrX 149658917 149659054 -12940876 + L1PA4 LINE L1 6015 6153 -2 4476 219 35 87 chrX 149659054 149659692 -12940238 + L1PA15 LINE L1 2739 3116 -3681 1979 132 3 10 chrX 149659692 149659988 -12939942 + AluSx SINE Alu 2 295 -17 4476 219 35 87 chrX 149659988 149660753 -12939177 + L1PA15 LINE L1 3116 3919 -2878 216 86 0 0 chrX 149660753 149660788 -12939142 + (GA)n Simple_repeat Simple_repeat 1 35 0 7889 209 25 7 chrX 149660874 149662416 -12937514 + L1MA2 LINE L1 13 1582 -5983 688 200 29 0 chrX 149662434 149662609 -12937321 + L1MA2 LINE L1 4367 4546 -3019 3968 194 12 9 chrX 149662726 149664250 -12935680 + L1MA2 LINE L1 6085 7723 0 6151 228 35 23 chrX 149664266 149664621 -12935309 + L1PA15 LINE L1 3975 4324 -2473 204 40 0 0 chrX 149664621 149664646 -12935284 + (CA)n Simple_repeat Simple_repeat 2 26 0 6151 228 35 23 chrX 149664646 149665963 -12933967 + L1PA15 LINE L1 4324 5666 -1131 4763 139 39 4 chrX 149666241 149667038 -12932892 + L1PA15 LINE L1 5984 6808 -8 741 211 6 0 chrX 149667439 149667605 -12932325 - L1ME1 LINE L1 -319 5845 5679 556 212 28 9 chrX 149667608 149667879 -12932051 + L1ME1 LINE L1 5847 6162 -4 237 226 226 0 chrX 149668253 149668315 -12931615 + L2 LINE L2 3232 3307 -6 822 323 88 22 chrX 149668540 149668859 -12931071 + LTR16A LTR ERVL 105 444 -6 1576 342 37 20 chrX 149668871 149669315 -12930615 + HERV16 LTR ERVL 42 508 -4488 1019 93 0 182 chrX 149669315 149669551 -12930379 + 7SK RNA RNA 1 193 0 1576 342 37 20 chrX 149669551 149669911 -12930019 + HERV16 LTR ERVL 508 860 -4136 2000 210 62 79 chrX 149670327 149670889 -12929041 - MLT1E LTR MaLR 0 593 13 1682 311 51 61 chrX 149670896 149672072 -12927858 + HERV16 LTR ERVL 1315 2539 -2457 1185 357 68 25 chrX 149672065 149673093 -12926837 + HERV16 LTR ERVL 3541 4660 -1104 * 304 286 34 41 chrX 149673148 149673295 -12926635 + HERV16 LTR ERVL 4743 4888 -597 1735 176 3 7 chrX 149673388 149673677 -12926253 + AluJb SINE Alu 2 289 -23 5840 86 8 34 chrX 149673873 149674706 -12925224 + HSMAR1 DNA Mariner 476 1287 0 274 152 0 0 chrX 149674706 149674752 -12925178 + MLT2B1 LTR ERVL 472 517 -3 319 233 56 22 chrX 149674754 149674844 -12925086 - L1MC4 LINE L1 -1346 6696 6604 220 111 44 0 chrX 149674858 149674903 -12925027 + (TA)n Simple_repeat Simple_repeat 2 48 0 1592 148 50 24 chrX 149674917 149675214 -12924716 - MER46B DNA MER2_type 0 236 57 218 56 28 0 chrX 149675240 149675276 -12924654 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 266 203 0 14 chrX 149675288 149675362 -12924568 + (TATG)n Simple_repeat Simple_repeat 2 74 0 267 303 0 0 chrX 149675367 149675433 -12924497 - MER2 DNA MER2_type 0 345 280 1046 127 27 0 chrX 149675646 149675796 -12924134 + AluSg/x SINE Alu 132 285 -25 21 0 0 0 chrX 149675796 149675817 -12924113 + AT_rich Low_complexity Low_complexity 1 21 0 736 216 8 0 chrX 149675817 149675951 -12923979 - MER2 DNA MER2_type -209 136 2 569 199 47 66 chrX 149676239 149676495 -12923435 - L1MC5 LINE L1 -207 7754 7504 1377 215 14 4 chrX 149676511 149676790 -12923140 - AluJo SINE Alu -30 282 1 833 229 121 61 chrX 149676898 149677327 -12922603 + MLT1D LTR MaLR 20 465 -2 233 264 11 0 chrX 149677327 149677414 -12922516 - L1MC5 LINE L1 -517 7444 7357 235 282 11 64 chrX 149677838 149678026 -12921904 + T-rich Low_complexity Low_complexity 2 179 0 * 259 284 7 43 chrX 149677922 149678063 -12921867 + CT-rich Low_complexity Low_complexity 2 137 0 208 386 31 16 chrX 149678353 149678480 -12921450 - MIR SINE MIR -59 203 75 773 304 46 69 chrX 149680177 149680675 -12919255 - MLT1G3 LTR MaLR -8 547 1 748 286 131 27 chrX 149681490 149681857 -12918073 - MLT1I LTR MaLR -4 405 1 248 213 0 0 chrX 149681925 149681972 -12917958 - MLT1I LTR MaLR -362 47 1 462 251 138 46 chrX 149683088 149683283 -12916647 + MIR SINE MIR 50 262 0 281 136 23 0 chrX 149683979 149684023 -12915907 + MER20 DNA MER1_type 2 46 -173 234 0 0 0 chrX 149684159 149684185 -12915745 + (A)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chrX 149684949 149684980 -12914950 + AT_rich Low_complexity Low_complexity 1 31 0 696 232 30 12 chrX 149684986 149685154 -12914776 + MER20 DNA MER1_type 49 219 0 344 228 25 25 chrX 149685155 149685234 -12914696 + MIR SINE MIR 32 110 -152 303 85 21 0 chrX 149685423 149685470 -12914460 + MADE1 DNA Mariner 33 80 0 310 364 46 0 chrX 149685792 149685965 -12913965 + L1M4 LINE L1 2287 2467 -3679 24 32 0 0 chrX 149685989 149686020 -12913910 + AT_rich Low_complexity Low_complexity 1 31 0 265 237 93 21 chrX 149686353 149686450 -12913480 + LTR33A LTR ERVL 418 521 -2 811 130 59 18 chrX 149687384 149687553 -12912377 + MER53 DNA DNA 13 188 -1 1987 263 99 15 chrX 149688065 149688968 -12910962 + L1ME3A LINE L1 5190 6165 -5 1497 265 42 50 chrX 149688984 149689648 -12910282 + L1MC4 LINE L1 7196 7854 -188 192 77 0 0 chrX 149689696 149689722 -12910208 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 226 253 77 0 chrX 149689741 149689832 -12910098 + L1MC4 LINE L1 7945 8042 0 317 258 120 74 chrX 149689864 149690081 -12909849 + L1ME4a LINE L1 5894 6120 -1 * 884 293 95 62 chrX 149690069 149690535 -12909395 + L1M4 LINE L1 3025 3533 -2613 432 198 12 0 chrX 149690535 149690621 -12909309 + L1MC1 LINE L1 6247 6333 0 884 293 95 62 chrX 149690621 149691004 -12908926 + L1M4 LINE L1 3533 3902 -2244 3745 134 19 5 chrX 149691032 149691679 -12908251 - L1PBa LINE L1 -4682 2181 1526 826 148 0 28 chrX 149691787 149691929 -12908001 - L1MD2 LINE L1 -104 6255 6118 578 312 96 38 chrX 149692411 149692703 -12907227 - L2 LINE L2 -159 3154 2846 257 91 0 45 chrX 149692705 149692749 -12907181 - L1M2 LINE L1 -661 5651 5610 * 1259 227 22 14 chrX 149692722 149693000 -12906930 + L1MD2 LINE L1 6061 6340 -19 430 314 96 30 chrX 149693045 149693348 -12906582 - L2 LINE L2 -768 2546 2224 256 361 0 0 chrX 149693348 149693431 -12906499 - L2 LINE L2 -1418 1896 1814 1352 202 72 39 chrX 149693935 149694297 -12905633 + MLT1A2 LTR MaLR 1 374 0 428 240 89 0 chrX 149695707 149695853 -12904077 - L1ME4a LINE L1 -16 6105 5947 207 171 24 0 chrX 149695923 149695964 -12903966 - L2 LINE L2 0 3313 3272 806 236 4 92 chrX 149695975 149696204 -12903726 + MER58A DNA MER1_type 1 209 -15 364 298 130 24 chrX 149696244 149696452 -12903478 - L2 LINE L2 -54 3259 3030 3591 22 0 0 chrX 149696453 149696897 -12903033 + L1PA2 LINE L1 5718 6161 0 607 362 22 0 chrX 149696903 149697214 -12902716 - L2 LINE L2 -291 3022 2707 430 335 29 12 chrX 149697247 149697420 -12902510 + MIR SINE MIR 3 178 -84 2411 46 0 0 chrX 149697516 149697824 -12902106 + AluY SINE Alu 1 308 0 883 292 21 4 chrX 149697886 149698122 -12901808 + MIR SINE MIR 2 241 -21 285 314 47 0 chrX 149698128 149698214 -12901716 - MER91B DNA MER1_type -1 189 100 234 0 0 0 chrX 149698906 149698932 -12900998 + (A)n Simple_repeat Simple_repeat 1 26 0 2167 103 3 0 chrX 149699597 149699889 -12900041 - AluSp SINE Alu -20 293 1 26 50 0 0 chrX 149700456 149700496 -12899434 + AT_rich Low_complexity Low_complexity 1 40 0 1386 87 0 5 chrX 149700590 149700774 -12899156 - AluY SINE Alu -10 301 119 385 315 24 24 chrX 149701232 149701397 -12898533 + MIR SINE MIR 37 201 -61 354 291 77 39 chrX 149701662 149701844 -12898086 + L2 LINE L2 2216 2404 -910 1090 263 75 22 chrX 149702935 149703293 -12896637 + MLT1D LTR MaLR 126 502 -3 495 300 96 32 chrX 149703784 149704034 -12895896 - MLT1L LTR MaLR -160 455 190 2202 189 11 25 chrX 149704345 149704783 -12895147 + MSTB1 LTR MaLR 1 432 0 458 306 25 47 chrX 149704847 149705082 -12894848 - L2 LINE L2 -924 2390 2161 357 333 14 7 chrX 149705232 149705379 -12894551 - MIR SINE MIR -4 258 111 2089 138 36 33 chrX 149705382 149705745 -12894185 - THE1B LTR MaLR 0 364 1 7891 154 10 28 chrX 149705862 149706063 -12893867 + L1MA1 LINE L1 3751 3954 -2348 405 0 0 0 chrX 149706063 149706108 -12893822 + (CA)n Simple_repeat Simple_repeat 2 46 0 7891 154 10 28 chrX 149706108 149706684 -12893246 + L1MA1 LINE L1 3954 4539 -1763 2547 58 0 3 chrX 149706684 149706995 -12892935 + AluY SINE Alu 1 310 -1 7891 154 10 28 chrX 149706995 149708814 -12891116 + L1MA1 LINE L1 4539 6302 0 303 252 37 148 chrX 149708981 149709251 -12890679 - L2 LINE L2 -338 2976 2737 1101 267 18 21 chrX 149709668 149710001 -12889929 + LTR43 LTR ERV1 131 462 -140 448 336 7 7 chrX 149710482 149710622 -12889308 - MIR3 SINE MIR -40 168 29 260 324 20 10 chrX 149711740 149711842 -12888088 - MIR SINE MIR -13 249 147 1488 246 75 23 chrX 149711866 149712264 -12887666 - MLT1D LTR MaLR 0 505 87 597 160 8 42 chrX 149712541 149712660 -12887270 + MLT1C LTR MaLR 1 115 -352 2155 157 22 3 chrX 149712778 149713135 -12886795 - THE1B LTR MaLR 0 364 1 10082 118 37 9 chrX 149713135 149714671 -12885259 - THE1B-int LTR MaLR 0 1580 2 2380 120 22 3 chrX 149714672 149715029 -12884901 - THE1B LTR MaLR 0 364 1 299 341 31 8 chrX 149715070 149715199 -12884731 - L1ME LINE L1 -584 5582 5451 24 67 0 0 chrX 149716699 149716744 -12883186 + AT_rich Low_complexity Low_complexity 1 45 0 1858 214 15 6 chrX 149717386 149717841 -12882089 + MER89 LTR ERV1 2 559 0 220 265 0 0 chrX 149718625 149718674 -12881256 + (TG)n Simple_repeat Simple_repeat 2 50 0 532 181 57 0 chrX 149718945 149719050 -12880880 + MIR SINE MIR 87 197 -65 384 232 0 0 chrX 149719055 149719154 -12880776 + (TA)n Simple_repeat Simple_repeat 1 99 0 356 273 0 7 chrX 149719187 149719326 -12880604 + (TA)n Simple_repeat Simple_repeat 2 139 0 1500 182 94 26 chrX 149720080 149720431 -12879499 - THE1C LTR MaLR 0 375 1 2923 173 24 10 chrX 149722249 149722845 -12877085 + L1MB2 LINE L1 5566 6169 -2 218 93 37 56 chrX 149723205 149723259 -12876671 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 252 161 18 18 chrX 149723467 149723523 -12876407 + L1MB2 LINE L1 5980 6035 -136 * 806 99 0 8 chrX 149723520 149723641 -12876289 - L1MB2 LINE L1 -202 5969 5850 5022 175 14 12 chrX 149724578 149725943 -12873987 + L1PA16 LINE L1 4784 6146 -20 331 282 48 10 chrX 149725956 149726059 -12873871 + MER92B LTR ERV1 483 589 -47 246 195 81 46 chrX 149726061 149726148 -12873782 + MER92B LTR ERV1 547 636 0 421 257 81 110 chrX 149726193 149726528 -12873402 + MLT1H1-int LTR MaLR 1023 1347 -24 227 146 36 55 chrX 149726608 149726660 -12873270 + MLT1H1 LTR MaLR 110 160 -389 1404 238 117 5 chrX 149726660 149727071 -12872859 - MLT1C LTR MaLR -1 466 10 438 305 113 24 chrX 149727218 149727431 -12872499 + MLT1H1 LTR MaLR 322 553 -2 1423 228 194 15 chrX 149727721 149728129 -12871801 + MLT1E2 LTR MaLR 146 626 0 1781 242 144 12 chrX 149728853 149729307 -12870623 + MER76 LTR ERV 7 400 -288 180 0 0 0 chrX 149729307 149729327 -12870603 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1781 242 144 12 chrX 149729327 149729342 -12870588 + MER76 LTR ERV 400 412 -276 1723 251 42 7 chrX 149729342 149729793 -12870137 + MLT1C LTR MaLR 1 467 0 1781 242 144 12 chrX 149729793 149729913 -12870017 + MER76 LTR ERV 412 675 -13 234 303 15 15 chrX 149730590 149730663 -12869267 + MIR SINE MIR 35 99 -109 318 273 103 0 chrX 149730773 149730874 -12869056 - MIR SINE MIR -50 158 48 2399 224 5 7 chrX 149731662 149732241 -12867689 - L1MA9 LINE L1 -1007 5139 4562 * 4974 195 18 6 chrX 149732240 149733365 -12866565 + L1MA9 LINE L1 5137 6274 -38 27 29 0 0 chrX 149733365 149733399 -12866531 + AT_rich Low_complexity Low_complexity 1 34 0 1865 247 49 59 chrX 149733413 149733558 -12866372 + MER76 LTR ERV 1 146 -542 1718 197 28 6 chrX 149733558 149733913 -12866017 + MLT1A1 LTR MaLR 3 365 0 1865 247 49 59 chrX 149733913 149734100 -12865830 + MER76 LTR ERV 146 333 -355 1971 120 67 22 chrX 149734100 149734459 -12865471 - THE1C LTR MaLR 0 375 1 1865 247 49 59 chrX 149734459 149734784 -12865146 + MER76 LTR ERV 333 652 -36 252 143 0 0 chrX 149735245 149735287 -12864643 + (TA)n Simple_repeat Simple_repeat 2 43 0 384 139 0 14 chrX 149736536 149736608 -12863322 - L1M LINE L1 -936 5367 5297 * 708 220 60 5 chrX 149736601 149736819 -12863111 - L1 LINE L1 -812 5334 5105 319 235 0 25 chrX 149736972 149737053 -12862877 + MER31-int LTR ERV1 80 158 -4778 644 204 20 14 chrX 149738075 149738222 -12861708 + L1PB1 LINE L1 70 217 -6646 * 8877 145 76 9 chrX 149738198 149740051 -12859879 + L1PB1 LINE L1 1392 3413 -3449 * 10090 188 18 8 chrX 149740019 149740202 -12859728 + L1PB1 LINE L1 3694 3874 -2993 207 0 0 0 chrX 149740202 149740225 -12859705 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10090 188 18 8 chrX 149740225 149742829 -12857101 + L1PB1 LINE L1 3874 6507 -360 350 57 0 57 chrX 149742835 149742905 -12857025 + (TA)n Simple_repeat Simple_repeat 2 67 0 2576 98 0 3 chrX 149742915 149743282 -12856648 + L1PB1 LINE L1 6498 6863 -4 937 167 17 17 chrX 149743768 149743948 -12855982 - L1M3 LINE L1 -396 5775 5596 581 262 42 46 chrX 149745297 149745534 -12854396 + MER31-int LTR ERV1 778 1013 -3923 328 307 76 94 chrX 149745883 149745946 -12853984 + L1M4c LINE L1 32 95 -6289 230 0 0 32 chrX 149745946 149745977 -12853953 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 328 307 76 94 chrX 149745977 149746242 -12853688 + L1M4c LINE L1 95 354 -6030 235 217 108 0 chrX 149746312 149746395 -12853535 + L1MB4 LINE L1 6089 6180 0 23 0 0 0 chrX 149747768 149747791 -12852139 + AT_rich Low_complexity Low_complexity 1 23 0 232 378 0 0 chrX 149747877 149747951 -12851979 + L2 LINE L2 3194 3267 -5 1839 174 28 31 chrX 149748291 149748647 -12851283 - THE1C LTR MaLR 0 375 21 9422 134 55 5 chrX 149748680 149750184 -12849746 - THE1C-int LTR MaLR 0 1580 1 2015 172 19 11 chrX 149750184 149750556 -12849374 - THE1C LTR MaLR 0 375 1 183 250 68 0 chrX 149750589 149750633 -12849297 + MIR SINE MIR 124 170 -92 201 74 0 0 chrX 149751082 149751109 -12848821 + (TC)n Simple_repeat Simple_repeat 2 28 0 261 0 0 0 chrX 149751109 149751138 -12848792 + (CA)n Simple_repeat Simple_repeat 1 29 0 243 61 0 0 chrX 149751141 149751174 -12848756 + (GA)n Simple_repeat Simple_repeat 1 33 0 1609 187 3 14 chrX 149751262 149751545 -12848385 + AluJo SINE Alu 3 282 -30 449 33 0 17 chrX 149751548 149751608 -12848322 + (TAA)n Simple_repeat Simple_repeat 2 60 0 321 306 163 7 chrX 149751608 149751755 -12848175 + MIR SINE MIR 23 192 -70 197 358 60 0 chrX 149751802 149751869 -12848061 - MIR SINE MIR -106 102 32 37 93 0 0 chrX 149752597 149752704 -12847226 + AT_rich Low_complexity Low_complexity 1 107 0 363 262 13 54 chrX 149753266 149753415 -12846515 - LTR16A LTR ERVL 0 457 315 961 378 36 11 chrX 149753418 149754026 -12845904 - ERVL LTR ERVL -621 5143 4521 339 340 10 0 chrX 149754026 149754126 -12845804 - ERVL LTR ERVL -3520 2244 2144 2586 248 89 70 chrX 149754443 149754676 -12845254 - L2 LINE L2 -823 2491 2264 2544 116 0 8 chrX 149754676 149755039 -12844891 + THE1B LTR MaLR 5 364 0 2586 248 89 70 chrX 149755039 149755073 -12844857 - L2 LINE L2 -1050 2264 2232 7050 54 1 1 chrX 149755073 149756455 -12843475 + L1PA7 LINE L1 4774 6141 -13 2586 248 89 70 chrX 149756455 149757273 -12842657 - L2 LINE L2 -1082 2232 1384 255 308 33 42 chrX 149757749 149757869 -12842061 + MER5B DNA MER1_type 1 119 -59 1570 211 65 8 chrX 149758056 149758412 -12841518 - MER101 LTR ERV1 -27 447 72 26 0 0 0 chrX 149758416 149758442 -12841488 + AT_rich Low_complexity Low_complexity 1 26 0 550 209 0 0 chrX 149758442 149758547 -12841383 - L1PA16 LINE L1 -9 6157 6053 512 134 0 62 chrX 149758551 149758663 -12841267 - L1MB3 LINE L1 0 6183 6079 602 272 110 0 chrX 149758674 149758902 -12841028 - L1MD3 LINE L1 0 7995 7743 4522 196 61 20 chrX 149758960 149759996 -12839934 - L1MA10 LINE L1 -3 6331 5254 267 325 63 8 chrX 149760398 149760524 -12839406 - L2 LINE L2 -2 3311 3179 191 194 0 0 chrX 149760974 149761005 -12838925 - MIR SINE MIR -181 81 51 186 326 0 0 chrX 149761822 149761871 -12838059 + L2 LINE L2 2595 2643 -671 413 299 26 7 chrX 149762220 149762374 -12837556 - LTR67 LTR ERVL 0 557 401 1346 28 6 16 chrX 149762402 149762584 -12837346 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 428 100 29 0 chrX 149762590 149762660 -12837270 + GA-rich Low_complexity Low_complexity 1 72 0 2206 86 0 33 chrX 149763106 149763408 -12836522 - AluSx SINE Alu -14 298 7 232 177 16 32 chrX 149763639 149763701 -12836229 + MLT1J LTR MaLR 401 461 -50 1996 145 58 9 chrX 149764054 149764398 -12835532 + MLT1A1 LTR MaLR 5 365 0 209 339 203 8 chrX 149765247 149765365 -12834565 + MIR SINE MIR 5 145 -117 1787 178 84 16 chrX 149765448 149765819 -12834111 + MSTD LTR MaLR 1 396 0 21 0 0 0 chrX 149766549 149766570 -12833360 + AT_rich Low_complexity Low_complexity 1 21 0 889 258 156 20 chrX 149768563 149768916 -12831014 + MLT1I LTR MaLR 1 401 -8 2661 88 6 3 chrX 149769632 149769986 -12829944 + THE1A LTR MaLR 1 355 0 394 289 0 9 chrX 149770166 149770280 -12829650 - MER103 DNA DNA -51 115 3 225 154 0 0 chrX 149771065 149771104 -12828826 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 328 310 52 61 chrX 149771128 149771341 -12828589 - HAL1b LINE L1 -646 702 492 294 333 0 0 chrX 149771345 149771456 -12828474 - Zaphod DNA AcHobo 0 4031 3921 536 301 78 0 chrX 149771479 149771645 -12828285 - MER115 DNA AcHobo -76 617 439 306 319 18 43 chrX 149771802 149771965 -12827965 - HAL1b LINE L1 -863 485 327 1514 100 39 2 chrX 149773027 149773269 -12826661 + L1ME LINE L1 5568 5819 -343 321 154 0 0 chrX 149773273 149773325 -12826605 + L1MC4 LINE L1 6652 6703 -1339 238 169 42 0 chrX 149773333 149773404 -12826526 + L1MCa LINE L1 1995 2068 -4358 2403 92 27 11 chrX 149773416 149773784 -12826146 + L1PB2 LINE L1 5777 6150 -1 420 292 182 10 chrX 149774052 149774261 -12825669 + MIR SINE MIR 8 252 -10 321 257 176 7 chrX 149774325 149774473 -12825457 + MER69A DNA AcHobo 1 173 -4 474 250 9 9 chrX 149774842 149774950 -12824980 + MIR3 SINE MIR 87 194 -14 338 333 22 14 chrX 149775580 149775718 -12824212 + L1MC4 LINE L1 7904 8042 0 591 309 140 23 chrX 149775799 149776184 -12823746 - L2 LINE L2 -6 3307 2878 284 162 0 29 chrX 149776192 149776260 -12823670 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 1593 315 108 36 chrX 149776319 149776698 -12823232 - L2 LINE L2 -798 2516 2165 2425 91 0 0 chrX 149776698 149777005 -12822925 + AluSc SINE Alu 1 307 -2 1593 315 108 36 chrX 149777005 149777665 -12822265 - L2 LINE L2 -1149 2165 1403 1956 122 0 41 chrX 149778121 149778442 -12821488 + AluSq SINE Alu 1 309 0 255 316 0 0 chrX 149778913 149779008 -12820922 + MIR3 SINE MIR 108 202 -6 273 263 263 26 chrX 149779716 149779868 -12820062 + MIR SINE MIR 62 249 -13 1213 181 10 0 chrX 149781676 149781880 -12818050 + MER58A DNA MER1_type 19 224 0 1700 174 7 17 chrX 149782036 149782335 -12817595 + AluJo SINE Alu 4 299 -13 475 241 90 81 chrX 149782369 149782714 -12817216 + L1ME LINE L1 5312 5659 -505 2331 49 3 21 chrX 149782859 149783215 -12816715 - AluY SINE Alu 0 351 1 187 365 125 24 chrX 149784348 149784977 -12814953 + L2 LINE L2 878 1591 -1723 697 210 72 30 chrX 149784977 149785144 -12814786 - MER96 DNA MER1_type 0 175 2 187 365 125 24 chrX 149785144 149785235 -12814695 + L2 LINE L2 1591 1671 -1643 1710 201 12 5 chrX 149785337 149785801 -12814129 + MLT2B2 LTR ERVL 1 515 0 373 306 113 55 chrX 149786036 149786382 -12813548 + L2 LINE L2 2944 3309 -4 382 324 57 84 chrX 149786395 149786657 -12813273 + L2 LINE L2 3017 3271 -1 185 347 61 0 chrX 149787222 149787320 -12812610 - MIR SINE MIR -56 206 103 925 52 185 0 chrX 149787324 149787459 -12812471 - AluY SINE Alu -5 306 147 22 56 0 0 chrX 149788277 149788313 -12811617 + AT_rich Low_complexity Low_complexity 1 36 0 326 330 69 42 chrX 149789544 149789805 -12810125 + L2 LINE L2 1522 1789 -1525 1651 133 35 30 chrX 149789805 149790144 -12809786 + L1MA8 LINE L1 5949 6289 -2 426 238 9 9 chrX 149790243 149790348 -12809582 - MER94 DNA DNA -29 105 1 262 206 29 49 chrX 149790878 149790980 -12808950 + Charlie7 DNA MER1_type 2508 2607 -5 23 0 0 0 chrX 149791016 149791039 -12808891 + AT_rich Low_complexity Low_complexity 1 23 0 1909 204 57 48 chrX 149791263 149791808 -12808122 - L1M3c LINE L1 -4800 1341 792 1511 237 23 5 chrX 149791892 149792280 -12807650 + L1 LINE L1 4816 5210 -936 1365 130 12 105 chrX 149792281 149792605 -12807325 + L1MA9 LINE L1 6019 6312 0 2180 98 0 11 chrX 149792669 149792977 -12806953 + AluSq SINE Alu 1 305 0 5187 234 14 20 chrX 149792977 149794117 -12805813 - MER66-int LTR ERV1 -2992 3684 2552 195 362 0 0 chrX 149794215 149794273 -12805657 - MIR SINE MIR 0 262 205 6751 235 36 15 chrX 149794287 149797036 -12802894 + L1PA13 LINE L1 1028 3823 -2974 264 225 50 12 chrX 149797360 149797440 -12802490 - AluYb8 SINE Alu -79 229 147 22 56 0 0 chrX 149798244 149798280 -12801650 + AT_rich Low_complexity Low_complexity 1 36 0 319 274 0 9 chrX 149798358 149798464 -12801466 - MER113 DNA MER1_type? -411 110 6 362 362 6 18 chrX 149799573 149799736 -12800194 + GA-rich Low_complexity Low_complexity 3 163 0 27 29 0 0 chrX 149799850 149799884 -12800046 + AT_rich Low_complexity Low_complexity 1 34 0 206 261 193 23 chrX 149800705 149800793 -12799137 + MIR SINE MIR 41 143 -65 672 236 165 0 chrX 149801109 149801291 -12798639 - MER58A DNA MER1_type 0 224 13 6462 212 32 8 chrX 149801586 149802901 -12797029 + L1MA2 LINE L1 22 1367 -6198 13164 173 30 25 chrX 149802904 149805699 -12794231 + L1MA2 LINE L1 3640 6456 -1267 2029 144 0 3 chrX 149805699 149805990 -12793940 + AluSx SINE Alu 3 292 -20 13164 173 30 25 chrX 149805990 149807264 -12792666 + L1MA2 LINE L1 6456 7723 0 1986 126 7 32 chrX 149807918 149808228 -12791702 - AluSx SINE Alu -9 303 2 282 112 10 82 chrX 149808662 149808760 -12791170 + (TATG)n Simple_repeat Simple_repeat 2 92 0 233 354 0 0 chrX 149808837 149808933 -12790997 + L1ME LINE L1 5484 5579 -542 21 57 0 0 chrX 149808979 149809014 -12790916 + AT_rich Low_complexity Low_complexity 1 35 0 233 248 152 16 chrX 149809112 149809237 -12790693 + L1ME4a LINE L1 5956 6097 -24 21 36 0 0 chrX 149809910 149809938 -12789992 + AT_rich Low_complexity Low_complexity 1 28 0 422 329 43 6 chrX 149810006 149810170 -12789760 - MIR3 SINE MIR 0 208 39 1054 242 115 31 chrX 149810457 149810995 -12788935 - LTR28 LTR ERV1 -125 511 1 2139 156 19 6 chrX 149811569 149811929 -12788001 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 149811943 149811965 -12787965 + AT_rich Low_complexity Low_complexity 1 22 0 687 112 9 9 chrX 149812141 149812248 -12787682 + FLAM_C SINE Alu 1 107 -36 372 299 81 18 chrX 149812248 149812469 -12787461 - L1ME LINE L1 -430 5723 5489 2045 289 83 21 chrX 149812496 149813902 -12786028 - L1ME LINE L1 -1031 5098 3606 463 348 114 18 chrX 149814110 149814567 -12785363 - L1ME LINE L1 -5221 898 398 270 285 99 33 chrX 149814552 149814703 -12785227 - L1ME LINE L1 -5922 197 37 * 1180 208 47 50 chrX 149815280 149815722 -12784208 + MER39 LTR ERV1 67 787 0 1515 196 51 98 chrX 149816718 149817208 -12782722 - MLT1C LTR MaLR 0 467 1 27 49 0 0 chrX 149817390 149817431 -12782499 + AT_rich Low_complexity Low_complexity 1 41 0 213 94 0 0 chrX 149817829 149817861 -12782069 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 437 271 62 8 chrX 149818972 149819101 -12780829 + MIR SINE MIR 58 193 -69 1511 152 58 4 chrX 149819105 149819381 -12780549 + L1MA9 LINE L1 5733 6023 -289 2016 256 130 6 chrX 149819463 149820116 -12779814 - MER21B LTR ERV1 -111 752 19 319 278 11 11 chrX 149820137 149820227 -12779703 - MER21B LTR ERV1 -773 90 1 1335 185 18 40 chrX 149820227 149820556 -12779374 + L1MA10 LINE L1 6010 6331 -3 227 114 23 0 chrX 149821845 149821889 -12778041 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1184 237 41 14 chrX 149822016 149822347 -12777583 - MER21B LTR ERV1 -228 703 282 186 43 0 0 chrX 149822381 149822404 -12777526 + (TA)n Simple_repeat Simple_repeat 1 23 0 249 33 0 0 chrX 149822405 149822435 -12777495 + (GA)n Simple_repeat Simple_repeat 1 30 0 1609 197 0 0 chrX 149822435 149822709 -12777221 - AluJb SINE Alu -30 282 9 280 298 47 26 chrX 149823323 149823514 -12776416 - L1 LINE L1 -2228 3918 3724 708 174 135 39 chrX 149823686 149823864 -12776066 + MER20 DNA MER1_type 1 195 -24 225 265 68 49 chrX 149823996 149824321 -12775609 - L1 LINE L1 -2744 3402 3072 813 291 12 12 chrX 149824336 149824594 -12775336 + L1ME1 LINE L1 5904 6161 -5 497 279 42 49 chrX 149824612 149824877 -12775053 + L1MC5 LINE L1 7234 7496 -465 226 188 50 109 chrX 149824948 149825049 -12774881 + L1ME3 LINE L1 5955 6049 -113 742 243 28 0 chrX 149825106 149825287 -12774643 + MER5A DNA MER1_type 2 187 -2 1489 248 19 35 chrX 149825428 149825860 -12774070 + MER57B LTR ERV1 1 425 -9 23 33 0 0 chrX 149826471 149826501 -12773429 + AT_rich Low_complexity Low_complexity 1 30 0 545 279 35 55 chrX 149826796 149826997 -12772933 - MIR SINE MIR -58 204 8 23 33 0 0 chrX 149828051 149828081 -12771849 + AT_rich Low_complexity Low_complexity 1 30 0 190 267 22 0 chrX 149828297 149828342 -12771588 + L2 LINE L2 3219 3264 -49 2366 43 3 17 chrX 149828956 149829255 -12770675 - AluY SINE Alu -16 295 1 213 311 42 17 chrX 149830494 149830613 -12769317 + MIR SINE MIR 138 259 -3 454 234 177 0 chrX 149831454 149831595 -12768335 - MER3 DNA MER1_type -23 186 21 3199 29 0 0 chrX 149832702 149833078 -12766852 - L1PA4 LINE L1 -3 6152 5777 2451 21 0 0 chrX 149833078 149833361 -12766569 + L1P2 LINE L1 5309 5591 -564 1094 219 32 16 chrX 149833979 149834294 -12765636 - MER33 DNA MER1_type 0 324 5 268 304 17 17 chrX 149834542 149834657 -12765273 + MIR SINE MIR 147 261 -1 1585 201 3 10 chrX 149835058 149835347 -12764583 - AluJo SINE Alu -23 289 3 656 313 99 32 chrX 149835631 149836224 -12763706 - L2 LINE L2 -4 3309 2671 820 275 126 21 chrX 149836320 149836605 -12763325 - L2 LINE L2 -972 2342 2016 2676 131 21 2 chrX 149836605 149837024 -12762906 + MSTA LTR MaLR 2 428 0 820 275 126 21 chrX 149837024 149837072 -12762858 - L2 LINE L2 -1298 2016 1974 3210 208 59 32 chrX 149837073 149838118 -12761812 + L1MB7 LINE L1 5081 6147 -37 345 210 0 0 chrX 149838129 149838210 -12761720 - L1PA13 LINE L1 0 6163 6083 2335 60 0 0 chrX 149838692 149838974 -12760956 - AluSc SINE Alu -2 307 26 473 241 60 54 chrX 149839583 149839749 -12760181 - MIR SINE MIR -10 252 86 2472 87 0 0 chrX 149839769 149840079 -12759851 - AluSg SINE Alu 0 310 1 1562 100 45 0 chrX 149840440 149840660 -12759270 - MER30 DNA MER1_type 0 230 1 803 184 81 92 chrX 149840670 149840768 -12759162 + MLT1B LTR MaLR 1 99 -291 1672 169 107 13 chrX 149840768 149841076 -12758854 - MER1B DNA MER1_type 0 337 1 803 184 81 92 chrX 149841076 149841145 -12758785 + MLT1B LTR MaLR 99 167 -223 2266 105 7 0 chrX 149841145 149841451 -12758479 + AluSx SINE Alu 1 308 -4 803 184 81 92 chrX 149841451 149841543 -12758387 + MLT1B LTR MaLR 167 258 -132 234 263 23 103 chrX 149841658 149841833 -12758097 - L2 LINE L2 -214 3058 2898 1222 176 35 27 chrX 149842346 149842602 -12757328 - THE1-int LTR MaLR -532 1048 791 2665 126 36 2 chrX 149843599 149844044 -12755886 - LTR46 LTR ERV1 0 460 1 49583 73 19 2 chrX 149844044 149847603 -12752327 - LTR46-int LTR ERV1 0 6985 3251 242 20 78 20 chrX 149847603 149847654 -12752276 + T-rich Low_complexity Low_complexity 2 55 0 49583 73 19 2 chrX 149847654 149850962 -12748968 - LTR46-int LTR ERV1 -3734 3251 1 3018 111 24 2 chrX 149850962 149851412 -12748518 - LTR46 LTR ERV1 0 460 1 543 312 59 35 chrX 149852104 149852306 -12747624 - LTR33 LTR ERVL -306 215 9 288 336 52 15 chrX 149852306 149852440 -12747490 + L3 LINE CR1 1196 1334 -243 2714 127 66 33 chrX 149852552 149852749 -12747181 + MER39B LTR ERV1 3 192 -461 2374 74 0 32 chrX 149852749 149853060 -12746870 + AluY SINE Alu 1 301 -10 2714 127 66 33 chrX 149853060 149853374 -12746556 + MER39B LTR ERV1 192 531 -122 309 320 0 0 chrX 149853696 149853774 -12746156 + L2 LINE L2 3189 3266 -6 200 370 30 10 chrX 149853799 149853899 -12746031 + MIR3 SINE MIR 2 103 -105 3065 140 76 2 chrX 149854181 149854718 -12745212 - L1PA16 LINE L1 -3 6163 5587 1736 166 14 7 chrX 149854786 149855096 -12744834 + AluSx SINE Alu 1 312 0 353 301 224 20 chrX 149855194 149855390 -12744540 - MIR SINE MIR 0 262 27 372 179 0 60 chrX 149855500 149855584 -12744346 + THE1C LTR MaLR 1 79 -296 387 0 0 0 chrX 149856582 149856625 -12743305 + (TG)n Simple_repeat Simple_repeat 2 44 0 3842 137 7 3 chrX 149856906 149857520 -12742410 - L1PA16 LINE L1 -10 6156 5541 754 134 14 21 chrX 149857923 149858065 -12741865 - MER67C LTR ERV1 0 710 570 4333 220 124 11 chrX 149858065 149859194 -12740736 + L1PA15 LINE L1 112 1368 -6197 1058 259 3 31 chrX 149859273 149859593 -12740337 + LOR1-int LTR ERV1 6851 7161 -959 * 7763 206 18 45 chrX 149859582 149860353 -12739577 - MER66-int LTR ERV1 -2263 4413 3623 2079 125 0 0 chrX 149860353 149860655 -12739275 + AluSg SINE Alu 1 302 0 7763 206 18 45 chrX 149860655 149861795 -12738135 - MER66-int LTR ERV1 -3053 3623 2552 196 362 0 0 chrX 149861893 149861951 -12737979 - MIR SINE MIR 0 262 205 15505 200 21 18 chrX 149861965 149867718 -12732212 + L1PA15 LINE L1 1796 7577 -7 431 307 8 0 chrX 149867788 149867915 -12732015 + L2 LINE L2 3180 3307 -6 823 113 42 7 chrX 149868168 149868310 -12731620 - L1PA11 LINE L1 -2 6172 6026 216 302 115 0 chrX 149868949 149869045 -12730885 - MIR SINE MIR 0 262 156 229 244 158 0 chrX 149869306 149869388 -12730542 + MLT1J LTR MaLR 271 365 -146 2172 104 6 6 chrX 149869489 149869817 -12730113 - THE1B LTR MaLR -36 328 1 744 331 22 11 chrX 149870263 149870722 -12729208 - L1ME LINE L1 -427 5743 5280 240 86 0 0 chrX 149870722 149870757 -12729173 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 999 103 0 0 chrX 149870779 149870925 -12729005 + (TA)n Simple_repeat Simple_repeat 1 146 0 27 0 0 0 chrX 149871089 149871116 -12728814 + AT_rich Low_complexity Low_complexity 1 27 0 2266 245 66 15 chrX 149871293 149871409 -12728521 - L1MEc LINE L1 -2991 3950 3841 2344 112 0 0 chrX 149871409 149871714 -12728216 - AluSx SINE Alu -7 305 1 2266 245 66 15 chrX 149871714 149872497 -12727433 - L1MEc LINE L1 -3100 3841 3041 359 198 185 12 chrX 149872515 149872677 -12727253 - L1MEc LINE L1 -3963 2978 2789 1386 236 72 70 chrX 149872767 149873491 -12726439 + MER50 LTR ERV1 10 734 0 246 189 68 68 chrX 149873500 149873648 -12726282 - L1MEc LINE L1 -5189 1752 1605 1609 228 56 57 chrX 149873649 149874312 -12725618 - L1MEc LINE L1 -4887 1536 875 16418 197 51 22 chrX 149874750 149879354 -12720576 - L1 LINE L1 -2805 4760 17 225 217 43 0 chrX 149879359 149879428 -12720502 - L1M3 LINE L1 -541 5642 5571 21 57 0 0 chrX 149879428 149879463 -12720467 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chrX 149879811 149879855 -12720075 + AT_rich Low_complexity Low_complexity 1 44 0 2432 63 13 0 chrX 149879860 149880159 -12719771 - AluY SINE Alu -8 303 1 33 73 0 0 chrX 149880453 149880521 -12719409 + AT_rich Low_complexity Low_complexity 1 68 0 2132 125 47 33 chrX 149880557 149880916 -12719014 + THE1B LTR MaLR 1 364 0 315 273 45 71 chrX 149881934 149882132 -12717798 - L2 LINE L2 -3 3310 3118 1590 202 32 3 chrX 149882263 149882568 -12717362 + AluJo SINE Alu 1 312 0 1054 278 116 32 chrX 149882730 149883194 -12716736 - L2 LINE L2 -831 2483 1981 310 111 67 100 chrX 149883196 149883286 -12716644 - L1 LINE L1 -1823 5742 5656 * 2985 249 63 4 chrX 149883283 149884339 -12715591 - L1 LINE L1 -2915 4650 3526 363 183 246 63 chrX 149884345 149884487 -12715443 - FRAM SINE Alu 0 166 1 2359 258 42 35 chrX 149884514 149885613 -12714317 - L1 LINE L1 -4296 3269 2164 1834 267 55 81 chrX 149885616 149886717 -12713213 - L1 LINE L1 -5947 1542 470 1221 99 50 0 chrX 149887574 149887756 -12712174 + L1PA13 LINE L1 5972 6162 -1 1741 178 112 10 chrX 149888281 149888664 -12711266 - MSTA LTR MaLR -6 422 1 26 64 0 0 chrX 149888975 149889022 -12710908 + AT_rich Low_complexity Low_complexity 1 47 0 793 246 39 20 chrX 149889258 149889461 -12710469 - MIR SINE MIR -48 214 8 543 319 79 17 chrX 149889484 149889725 -12710205 - MIR SINE MIR -3 259 4 2333 95 3 19 chrX 149890613 149890929 -12709001 - AluSx SINE Alu 0 312 2 203 271 0 0 chrX 149890950 149890998 -12708932 + MIR SINE MIR 143 190 -72 29 70 0 0 chrX 149891417 149891474 -12708456 + AT_rich Low_complexity Low_complexity 1 57 0 331 337 0 59 chrX 149891573 149891634 -12708296 - MIR SINE MIR -56 206 143 2274 125 0 0 chrX 149891634 149891947 -12707983 + AluSq SINE Alu 1 313 0 331 337 0 59 chrX 149891947 149892054 -12707876 - MIR SINE MIR -119 143 48 474 275 4 96 chrX 149892057 149892337 -12707593 + L1ME1 LINE L1 39 292 -6104 1236 234 61 61 chrX 149892337 149892731 -12707199 - MSTD LTR MaLR 0 396 3 3036 234 65 25 chrX 149892733 149893537 -12706393 - MSTD-int LTR MaLR 0 1735 900 1224 269 76 44 chrX 149893540 149894131 -12705799 + L1ME1 LINE L1 288 897 -5499 1599 235 81 11 chrX 149894170 149894740 -12705190 + L1ME1 LINE L1 4690 5299 -916 450 153 10 0 chrX 149894746 149894844 -12705086 + L1MA2 LINE L1 5943 6041 -263 960 199 0 0 chrX 149894844 149895035 -12704895 - MER50 LTR ERV1 0 734 544 1210 139 17 38 chrX 149895078 149895130 -12704800 - MER50 LTR ERV1 -501 233 181 441 0 0 0 chrX 149895130 149895179 -12704751 + (TG)n Simple_repeat Simple_repeat 1 49 0 1210 139 17 38 chrX 149895179 149895364 -12704566 - MER50 LTR ERV1 -553 181 1 1738 73 27 0 chrX 149895365 149895624 -12704306 + L1MA2 LINE L1 6039 6304 0 1731 224 118 3 chrX 149895643 149896178 -12703752 + L1ME1 LINE L1 5423 6011 -224 10094 251 47 14 chrX 149896189 149896784 -12703146 - L1P4 LINE L1 -574 7030 6457 2097 139 37 6 chrX 149896784 149897137 -12702793 - THE1B LTR MaLR 0 364 1 10094 251 47 14 chrX 149897137 149897152 -12702778 - L1P4 LINE L1 -1147 6457 6444 2424 146 3 3 chrX 149897152 149897516 -12702414 + THE1B LTR MaLR 1 364 0 10094 251 47 14 chrX 149897516 149901315 -12698615 - L1P4 LINE L1 -1160 6444 2454 1996 216 73 69 chrX 149901481 149902223 -12697707 - LTR1B LTR ERV1 -81 745 1 660 301 5 0 chrX 149902223 149902432 -12697498 - L1P4 LINE L1 -5190 2391 2182 374 374 33 0 chrX 149902668 149902850 -12697080 - L1P4 LINE L1 -5401 2180 1993 236 302 79 16 chrX 149902832 149903021 -12696909 - L1MEc LINE L1 -4202 2194 1994 * 27 49 0 0 chrX 149903673 149903714 -12696216 + AT_rich Low_complexity Low_complexity 1 41 0 271 277 0 15 chrX 149903781 149903846 -12696084 - MIR SINE MIR -196 66 3 2030 159 83 15 chrX 149903851 149904248 -12695682 - MSTA LTR MaLR -4 424 1 757 170 0 25 chrX 149904250 149904409 -12695521 - MSTA-int LTR MaLR -2 1578 1424 2345 137 25 0 chrX 149904415 149904781 -12695149 - THE1C LTR MaLR 0 375 1 9588 122 29 11 chrX 149904781 149906302 -12693628 - THE1C-int LTR MaLR 0 1580 32 413 149 0 14 chrX 149906302 149906376 -12693554 - THE1C-int LTR MaLR -1507 73 1 1448 136 0 0 chrX 149906376 149906597 -12693333 - THE1C LTR MaLR 0 375 155 7037 193 24 8 chrX 149906597 149908003 -12691927 - MSTA-int LTR MaLR -223 1428 1 203 176 0 0 chrX 149908032 149908066 -12691864 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 1570 177 10 10 chrX 149908077 149908387 -12691543 - MSTA LTR MaLR -118 310 1 316 213 43 21 chrX 149909026 149909120 -12690810 + L3 LINE CR1 912 1007 -570 319 281 24 24 chrX 149909157 149909242 -12690688 - L1MA10 LINE L1 0 6334 6250 1366 282 37 22 chrX 149909242 149909884 -12690046 - L1ME1 LINE L1 -76 6090 5439 552 233 0 0 chrX 149911375 149911525 -12688405 + L1 LINE L1 3734 3883 -2263 873 236 21 21 chrX 149911777 149912057 -12687873 + L1MB8 LINE L1 5887 6166 -12 269 182 0 15 chrX 149912076 149912142 -12687788 + GA-rich Low_complexity Low_complexity 5 69 0 823 191 0 7 chrX 149912812 149912964 -12686966 - AluJb SINE Alu -106 206 56 299 318 71 35 chrX 149913088 149913456 -12686474 + L1ME LINE L1 5412 5792 -329 1103 98 0 0 chrX 149914261 149914414 -12685516 + L1PA7 LINE L1 5997 6149 -5 2897 213 45 7 chrX 149914422 149915289 -12684641 + L1 LINE L1 2908 3807 -2339 2200 87 3 26 chrX 149915298 149915607 -12684323 - AluSq SINE Alu -11 302 1 593 300 41 8 chrX 149915918 149916185 -12683745 - LTR16A1 LTR ERVL 0 457 182 1536 210 38 44 chrX 149916185 149916766 -12683164 - L1ME LINE L1 -378 5788 5223 323 319 35 18 chrX 149916807 149917036 -12682894 - L1ME LINE L1 -4461 1800 1568 360 0 0 0 chrX 149917055 149917095 -12682835 + (TTA)n Simple_repeat Simple_repeat 3 42 0 11402 50 4 0 chrX 149917095 149919278 -12680652 - L1PA5 LINE L1 -18 6136 3948 1580 56 0 0 chrX 149919278 149919493 -12680437 + L1PA5 LINE L1 3737 3951 -2195 1150 282 75 34 chrX 149919491 149920936 -12678994 - L1ME LINE L1 -4571 1509 21 * 923 42 0 8 chrX 149920998 149921116 -12678814 - L1PA5 LINE L1 -4 6150 6034 1750 50 58 0 chrX 149921116 149921356 -12678574 + L1P1 LINE L1 5463 5716 -439 189 0 0 0 chrX 149921547 149921568 -12678362 + (CA)n Simple_repeat Simple_repeat 2 22 0 264 30 0 0 chrX 149921623 149921656 -12678274 + (TG)n Simple_repeat Simple_repeat 2 34 0 234 266 240 36 chrX 149921830 149922138 -12677792 + MLT1H LTR MaLR 118 488 -61 4626 38 3 0 chrX 149922143 149922722 -12677208 - LTR10C LTR ERV1 0 591 11 390 368 55 30 chrX 149923243 149923610 -12676320 + L2 LINE L2 545 920 -2394 420 277 117 21 chrX 149924862 149925171 -12674759 + LTR33 LTR ERVL 15 378 -143 2227 109 7 0 chrX 149925242 149925544 -12674386 + AluSg SINE Alu 1 304 -6 240 220 34 0 chrX 149925567 149925626 -12674304 - MLT1F1 LTR MaLR -37 530 470 566 286 55 44 chrX 149925718 149925900 -12674030 - MLT1F1 LTR MaLR -278 289 106 535 296 63 35 chrX 149925902 149926493 -12673437 - L1MEc LINE L1 -4794 1602 996 346 147 85 0 chrX 149926528 149926657 -12673273 + (TA)n Simple_repeat Simple_repeat 2 141 0 226 277 88 36 chrX 149926891 149927028 -12672902 - MLT1-int LTR MaLR -536 835 692 378 0 0 0 chrX 149927855 149927897 -12672033 + (CA)n Simple_repeat Simple_repeat 2 43 0 528 100 0 0 chrX 149927897 149927977 -12671953 + (TA)n Simple_repeat Simple_repeat 2 81 0 2139 200 16 24 chrX 149927979 149928478 -12671452 - L1MA10 LINE L1 -67 6267 5773 1523 241 26 2 chrX 149928481 149928975 -12670955 - L1 LINE L1 -3015 4091 3586 889 304 87 41 chrX 149929008 149929525 -12670405 - L1 LINE L1 -6489 541 1 859 317 58 59 chrX 149929647 149929746 -12670184 - L2 LINE L2 -129 3184 3086 2087 128 0 0 chrX 149929746 149930058 -12669872 - AluSx SINE Alu 0 312 1 859 317 58 59 chrX 149930058 149930555 -12669375 - L2 LINE L2 -227 3086 2573 253 245 10 59 chrX 149930695 149930797 -12669133 - LTR33 LTR ERVL -7 514 418 2254 122 0 6 chrX 149930872 149931184 -12668746 + AluSg SINE Alu 1 310 0 236 128 43 0 chrX 149931207 149931254 -12668676 - LTR33 LTR ERVL -468 53 5 333 298 57 14 chrX 149931633 149931774 -12668156 - LTR16C LTR ERVL -1 490 344 37 69 0 0 chrX 149932428 149932500 -12667430 + AT_rich Low_complexity Low_complexity 1 72 0 539 153 0 10 chrX 149932911 149933009 -12666921 + MER4A LTR ERV1 2 98 -566 1452 139 171 79 chrX 149933009 149933377 -12666553 + MER4A LTR ERV1 263 664 0 24 0 0 0 chrX 149934307 149934331 -12665599 + AT_rich Low_complexity Low_complexity 1 24 0 242 298 0 0 chrX 149934436 149934530 -12665400 + L1MCc LINE L1 1359 1452 -4971 381 248 43 112 chrX 149934692 149934950 -12664980 + L1MCc LINE L1 311 550 -6289 2466 103 40 0 chrX 149934993 149935343 -12664587 - THE1B LTR MaLR 0 364 1 18241 162 25 18 chrX 149935374 149937060 -12662870 + L1M1 LINE L1 18 1690 -5875 315 0 0 0 chrX 149937060 149937095 -12662835 + (GA)n Simple_repeat Simple_repeat 2 36 0 18241 162 25 18 chrX 149937095 149938563 -12661367 + L1M1 LINE L1 1690 3202 -4363 705 34 0 0 chrX 149938563 149938673 -12661257 + L1PA3 LINE L1 6064 6155 0 18241 162 25 18 chrX 149938673 149938915 -12661015 + L1M1 LINE L1 3202 3441 -4124 2208 148 75 8 chrX 149938915 149939315 -12660615 - MSTA LTR MaLR -1 427 1 5546 197 68 12 chrX 149939315 149940555 -12659375 - MSTA-int LTR MaLR 0 1651 344 2431 119 34 3 chrX 149940587 149940975 -12658955 + L1PA13 LINE L1 5764 6163 0 1327 144 21 0 chrX 149940975 149941211 -12658719 + L1MA2 LINE L1 6057 6304 0 207 277 246 15 chrX 149941326 149941456 -12658474 - MIR SINE MIR -55 207 48 230 350 45 48 chrX 149942330 149942727 -12657203 + L1MCc LINE L1 782 1177 -5945 1047 294 79 41 chrX 149942998 149944063 -12655867 + L1MCc LINE L1 1434 2538 -4584 536 100 0 0 chrX 149944090 149944180 -12655750 - Charlie5 DNA MER1_type -124 2488 2399 799 303 60 44 chrX 149944220 149944785 -12655145 + L1ME2 LINE L1 24 597 -5826 272 286 127 8 chrX 149944843 149944969 -12654961 + L1ME2 LINE L1 760 900 -5523 1965 237 99 32 chrX 149944974 149946431 -12653499 + L1ME2 LINE L1 5311 6940 -19 820 266 121 23 chrX 149946443 149947003 -12652927 + L1MC/D LINE L1 2356 2970 -4152 438 231 33 8 chrX 149947004 149947125 -12652805 - LTR41 LTR ERVL -637 136 13 534 260 0 28 chrX 149947145 149947322 -12652608 + L1M4 LINE L1 4009 4180 -1966 228 35 0 0 chrX 149947341 149947370 -12652560 + (CA)n Simple_repeat Simple_repeat 2 30 0 1627 243 7 60 chrX 149947411 149947572 -12652358 + L1M4 LINE L1 4627 4795 -1351 4054 182 49 33 chrX 149947572 149948423 -12651507 - MER6 DNA MER2_type 0 865 1 1627 243 7 60 chrX 149948423 149948874 -12651056 + L1M4 LINE L1 4795 5206 -940 1626 283 57 25 chrX 149948860 149949093 -12650837 + L1MC/D LINE L1 5272 5496 -1643 * 5752 102 19 34 chrX 149949093 149949796 -12650134 + L1PA11 LINE L1 4775 5487 -687 2819 13 0 0 chrX 149949796 149950104 -12649826 + AluYb8 SINE Alu 1 308 -10 5752 102 19 34 chrX 149950104 149950415 -12649515 + L1PA11 LINE L1 5487 5801 -373 2281 110 0 3 chrX 149950415 149950725 -12649205 + AluSq SINE Alu 3 311 -2 5752 102 19 34 chrX 149950725 149951122 -12648808 + L1PA11 LINE L1 5801 6174 0 1626 283 57 25 chrX 149951122 149951536 -12648394 + L1MC/D LINE L1 5496 6396 -743 1625 234 28 83 chrX 149951537 149951774 -12648156 + L1MB8 LINE L1 3877 4125 -2021 2480 57 0 0 chrX 149951774 149952074 -12647856 - AluY SINE Alu -11 300 1 1625 234 28 83 chrX 149952074 149952610 -12647320 + L1MB8 LINE L1 4125 4608 -1538 5003 96 3 0 chrX 149952623 149953311 -12646619 - L1PA12 LINE L1 0 6168 5479 190 56 56 0 chrX 149953311 149953347 -12646583 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 8454 25 0 0 chrX 149953347 149955101 -12644829 - L1PA3 LINE L1 -13 6142 4389 1564 143 27 15 chrX 149955101 149955197 -12644733 - L1PA12 LINE L1 -689 5472 5379 1362 25 0 0 chrX 149955197 149955358 -12644572 + L1PA3 LINE L1 5994 6154 -1 1564 143 27 15 chrX 149955358 149955664 -12644266 - L1PA12 LINE L1 -782 5379 5065 * 2689 220 95 19 chrX 149955658 149956815 -12643115 + L1MB8 LINE L1 4808 6175 -3 1482 132 89 0 chrX 149957275 149957417 -12642513 + L1MA9 LINE L1 5999 6127 -185 360 0 0 0 chrX 149957417 149957457 -12642473 + (CA)n Simple_repeat Simple_repeat 1 40 0 1482 132 89 0 chrX 149957457 149957594 -12642336 + L1MA9 LINE L1 6127 6303 -9 22 35 0 0 chrX 149957660 149957689 -12642241 + AT_rich Low_complexity Low_complexity 1 29 0 2298 73 0 10 chrX 149958846 149959134 -12640796 - AluY SINE Alu -26 285 1 6204 64 8 0 chrX 149959142 149959935 -12639995 - L1PA7 LINE L1 -4 6150 5352 2308 87 3 3 chrX 149959963 149960261 -12639669 - AluSc SINE Alu -11 298 1 233 331 194 16 chrX 149960362 149960486 -12639444 + L2 LINE L2 3127 3272 0 2386 68 0 0 chrX 149960664 149960959 -12638971 - AluY SINE Alu -16 295 1 370 148 0 86 chrX 149961756 149961799 -12638131 - MIR SINE MIR -111 151 117 1969 204 0 5 chrX 149961799 149962166 -12637764 - MLT1A1 LTR MaLR 0 365 1 370 148 0 86 chrX 149962166 149962203 -12637727 - MIR SINE MIR -145 117 78 2325 88 3 0 chrX 149962564 149962860 -12637070 - AluSq SINE Alu -14 299 3 2308 103 0 3 chrX 149963712 149964023 -12635907 - AluSx SINE Alu -1 311 2 2312 88 7 0 chrX 149965085 149965380 -12634550 - AluSc SINE Alu -12 297 1 287 206 41 14 chrX 149965553 149965626 -12634304 + MIR SINE MIR 64 138 -70 248 268 47 47 chrX 149965662 149965789 -12634141 + MIR SINE MIR 118 244 -18 317 203 0 0 chrX 149966070 149966129 -12633801 - MIR SINE MIR -26 236 178 203 257 86 76 chrX 149966427 149966532 -12633398 + MIR SINE MIR 39 144 -64 22 0 0 0 chrX 149966727 149966749 -12633181 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 149967569 149967591 -12632339 + AT_rich Low_complexity Low_complexity 1 22 0 865 201 24 12 chrX 149967671 149967799 -12632131 + MER21B LTR ERV1 329 461 -402 757 201 54 13 chrX 149967799 149967948 -12631982 - FRAM SINE Alu -11 155 1 865 201 24 12 chrX 149967948 149967983 -12631947 + MER21B LTR ERV1 461 494 -369 24 0 0 0 chrX 149967983 149968007 -12631923 + AT_rich Low_complexity Low_complexity 1 24 0 254 178 56 11 chrX 149968096 149968186 -12631744 + (TTA)n Simple_repeat Simple_repeat 2 95 0 2229 136 0 0 chrX 149968226 149968536 -12631394 - AluSx SINE Alu 0 312 3 332 309 11 0 chrX 149968806 149968900 -12631030 - MARNA DNA Mariner -374 212 118 21 36 0 0 chrX 149968940 149968968 -12630962 + AT_rich Low_complexity Low_complexity 1 28 0 1141 203 4 50 chrX 149970025 149970266 -12629664 + MIR SINE MIR 24 253 -9 229 292 14 0 chrX 149970413 149970485 -12629445 + MIR3 SINE MIR 136 208 0 218 290 167 7 chrX 149971096 149971234 -12628696 + MIR SINE MIR 71 230 -32 2387 56 3 0 chrX 149971884 149972170 -12627760 + AluSp SINE Alu 1 287 -26 274 327 85 20 chrX 149972202 149972355 -12627575 + L2 LINE L2 2596 2758 -556 332 345 157 23 chrX 149972621 149973143 -12626787 - L2 LINE L2 -995 2319 1728 237 132 0 0 chrX 149973256 149973294 -12626636 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1803 184 28 17 chrX 149973701 149974060 -12625870 + MLT1A1 LTR MaLR 3 365 0 234 367 136 33 chrX 149974081 149974357 -12625573 - L2 LINE L2 -2259 1055 732 1444 173 29 48 chrX 149974357 149974670 -12625260 + AluJb SINE Alu 1 307 -5 234 367 136 33 chrX 149974670 149974753 -12625177 - L2 LINE L2 -2582 732 659 256 341 194 9 chrX 149974967 149975184 -12624746 + MIR SINE MIR 6 262 0 2096 137 24 0 chrX 149975532 149975868 -12624062 - L1PA15 LINE L1 -7 6158 5815 21 82 0 0 chrX 149975877 149975926 -12624004 + AT_rich Low_complexity Low_complexity 1 49 0 2241 132 19 16 chrX 149976135 149976507 -12623423 + THE1C LTR MaLR 3 375 0 228 208 39 39 chrX 149976947 149977024 -12622906 + L1ME LINE L1 5816 5892 -229 365 291 52 0 chrX 149978671 149978805 -12621125 + MIR SINE MIR 80 220 -42 697 122 0 38 chrX 149979050 149979143 -12620787 + L1MA4A LINE L1 6162 6250 -53 2182 141 30 25 chrX 149979143 149979505 -12620425 + THE1B LTR MaLR 1 364 0 697 122 0 38 chrX 149979505 149979542 -12620388 + L1MA4A LINE L1 6250 6287 -16 26 50 0 0 chrX 149979549 149979589 -12620341 + AT_rich Low_complexity Low_complexity 1 40 0 252 0 0 0 chrX 149979955 149979983 -12619947 + (TG)n Simple_repeat Simple_repeat 2 29 0 1795 245 64 31 chrX 149980659 149981267 -12618663 - L1MC4 LINE L1 -1 8041 7414 1737 32 0 23 chrX 149981268 149981485 -12618445 + L1PA7 LINE L1 5941 6152 -2 198 0 0 0 chrX 149981681 149981703 -12618227 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 1330 211 100 4 chrX 149981733 149982280 -12617650 - L1MC4 LINE L1 -630 7412 6756 235 206 31 93 chrX 149982398 149982495 -12617435 - L1MC4a LINE L1 -1366 6442 6352 * 2423 253 65 26 chrX 149982483 149983930 -12616000 - L1ME2 LINE L1 -20 6078 4573 13688 211 23 46 chrX 149983976 149991157 -12608773 - L1MA3 LINE L1 0 7008 10 924 272 61 97 chrX 149991257 149991633 -12608297 - L1ME2 LINE L1 -4876 1385 997 2009 112 0 0 chrX 149991633 149991901 -12608029 - AluSq SINE Alu -45 268 1 924 272 61 97 chrX 149991901 149992905 -12607025 - L1ME2 LINE L1 -5264 997 5 206 319 29 0 chrX 149993052 149993121 -12606809 + L2 LINE L2 3228 3298 -15 375 278 92 77 chrX 149993188 149993515 -12606415 + MLT1I LTR MaLR 63 394 -15 558 227 8 17 chrX 149993577 149993696 -12606234 + L2 LINE L2 3192 3309 -4 4027 258 61 45 chrX 149993964 149996424 -12603506 + L1M3d LINE L1 2 2233 -3737 2244 100 0 0 chrX 149996424 149996724 -12603206 + AluY SINE Alu 1 300 -11 4027 258 61 45 chrX 149996724 149998153 -12601777 + L1M3d LINE L1 2233 3638 -2332 418 290 101 18 chrX 149998437 149998654 -12601276 + MIR SINE MIR 1 235 -27 419 288 44 0 chrX 149999076 149999233 -12600697 - MIR SINE MIR -62 146 16 2182 111 0 0 chrX 149999250 149999547 -12600383 - AluSc SINE Alu -6 303 7 231 274 42 21 chrX 149999616 149999711 -12600219 + L3 LINE CR1 879 975 -602 919 335 81 13 chrX 149999748 150000217 -12599713 + L3 LINE CR1 1072 1572 -5 258 277 125 18 chrX 150000284 150000396 -12599534 - MLT1I LTR MaLR -6 403 280 1314 244 54 109 chrX 150000413 150001066 -12598864 - MER21B LTR ERV1 -149 714 98 286 297 7 48 chrX 150001034 150001179 -12598751 - MER77 LTR ERV1 -403 202 64 * 753 307 11 19 chrX 150001197 150001467 -12598463 - MLT1I LTR MaLR -141 268 1 7015 107 14 7 chrX 150002560 150004077 -12595853 + SVA Other Other 14 1385 -1 687 153 73 0 chrX 150004180 150004304 -12595626 - FLAM_C SINE Alu 0 133 1 425 279 39 39 chrX 150004359 150004588 -12595342 + L1ME LINE L1 5427 5655 -515 844 106 0 57 chrX 150004674 150004815 -12595115 + FLAM_C SINE Alu 1 133 0 300 91 0 0 chrX 150004849 150004893 -12595037 + (A)n Simple_repeat Simple_repeat 1 44 0 218 348 94 49 chrX 150004909 150005153 -12594777 + L2 LINE L2 3015 3269 -3 2332 84 0 10 chrX 150005302 150005612 -12594318 + AluY SINE Alu 5 311 0 218 323 65 16 chrX 150005786 150005910 -12594020 - MIR SINE MIR -52 210 81 3182 204 102 22 chrX 150005961 150006764 -12593166 - MER63C DNA MER1_type -139 921 45 270 0 0 0 chrX 150006764 150006794 -12593136 + (CA)n Simple_repeat Simple_repeat 2 31 0 3182 204 102 22 chrX 150006794 150006840 -12593090 - MER63C DNA MER1_type -1015 45 4 395 369 154 30 chrX 150006867 150007635 -12592295 + L2 LINE L2 1869 2731 -583 22 0 0 0 chrX 150007816 150007838 -12592092 + AT_rich Low_complexity Low_complexity 1 22 0 240 183 14 0 chrX 150007967 150008038 -12591892 + L1M4 LINE L1 2904 2975 -3171 584 258 70 24 chrX 150008064 150008297 -12591633 + L1M4 LINE L1 2948 3203 -2943 2214 125 0 3 chrX 150008297 150008610 -12591320 + AluSx SINE Alu 1 312 0 584 258 70 24 chrX 150008610 150008717 -12591213 + L1M4 LINE L1 3203 3304 -2842 573 236 12 24 chrX 150008754 150008919 -12591011 + MER3 DNA MER1_type 17 179 -30 1438 274 58 26 chrX 150009033 150009236 -12590694 + L1M4 LINE L1 4581 4776 -1370 2383 83 0 0 chrX 150009236 150009526 -12590404 + AluSg1 SINE Alu 2 291 -18 1438 274 58 26 chrX 150009526 150009974 -12589956 + L1M4 LINE L1 4776 5253 -893 30 59 0 0 chrX 150009980 150010031 -12589899 + AT_rich Low_complexity Low_complexity 1 51 0 245 267 198 0 chrX 150010863 150010964 -12588966 + L2 LINE L2 3191 3311 -2 212 369 0 0 chrX 150011066 150011150 -12588780 + MIR SINE MIR 53 136 -72 342 304 87 22 chrX 150011754 150011892 -12588038 - MIR SINE MIR -96 166 20 231 88 0 0 chrX 150013998 150014032 -12585898 + (CA)n Simple_repeat Simple_repeat 2 35 0 1678 173 45 10 chrX 150014085 150014397 -12585533 - THE1C LTR MaLR 0 375 53 818 229 11 0 chrX 150014392 150014571 -12585359 + MER82 DNA MER2_type 27 207 -446 * 280 119 0 0 chrX 150014959 150015001 -12584929 - MLT2A1 LTR ERVL -351 93 52 570 306 113 0 chrX 150015003 150015032 -12584898 + MER82 DNA MER2_type 392 416 -237 182 36 0 36 chrX 150015032 150015060 -12584870 + (CA)n Simple_repeat Simple_repeat 1 27 0 570 306 113 0 chrX 150015060 150015259 -12584671 + MER82 DNA MER2_type 416 646 -7 5079 170 7 12 chrX 150015406 150015950 -12583980 - L1PB3 LINE L1 -2 6152 5607 3115 78 57 2 chrX 150015950 150016371 -12583559 + MLT2A1 LTR ERVL 1 444 0 5079 170 7 12 chrX 150016371 150017308 -12582622 - L1PB3 LINE L1 -547 5607 4678 2103 273 61 61 chrX 150017321 150018458 -12581472 - L1PBa LINE L1 -5611 1252 116 255 254 0 0 chrX 150018459 150018522 -12581408 - L1PBa LINE L1 -6798 65 3 208 148 74 0 chrX 150018590 150018644 -12581286 + (CATAT)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chrX 150019445 150019468 -12580462 + AT_rich Low_complexity Low_complexity 1 23 0 701 299 98 30 chrX 150019829 150020167 -12579763 + LTR16B LTR ERVL 96 456 -8 466 311 116 24 chrX 150020174 150020502 -12579428 + L1ME4a LINE L1 5621 5978 -143 2099 124 63 17 chrX 150021098 150021446 -12578484 - THE1B LTR MaLR 0 364 1 1486 192 25 28 chrX 150022247 150022533 -12577397 - AluJb SINE Alu -22 290 6 843 312 103 22 chrX 150022833 150023512 -12576418 - L2 LINE L2 -42 3271 2543 273 57 0 0 chrX 150023819 150023854 -12576076 + (TAA)n Simple_repeat Simple_repeat 3 37 0 2200 111 10 0 chrX 150026788 150027094 -12572836 + AluSg SINE Alu 2 310 0 22 56 0 0 chrX 150027245 150027281 -12572649 + AT_rich Low_complexity Low_complexity 1 36 0 1310 188 0 4 chrX 150027410 150027644 -12572286 + MLT1D LTR MaLR 3 235 -270 214 105 53 0 chrX 150027658 150027696 -12572234 + GA-rich Low_complexity Low_complexity 1 40 0 1024 206 124 5 chrX 150027699 150027940 -12571990 + MLT1D LTR MaLR 206 468 -37 480 262 40 27 chrX 150028803 150028952 -12570978 + L3 LINE CR1 1425 1575 -2 2249 140 22 0 chrX 150029109 150029465 -12570465 - THE1B LTR MaLR 0 364 1 9678 109 40 47 chrX 150029465 150031056 -12568874 - THE1B-int LTR MaLR 0 1580 1 2155 166 22 0 chrX 150031056 150031412 -12568518 - THE1B LTR MaLR 0 364 1 2365 80 0 3 chrX 150032542 150032842 -12567088 - AluY SINE Alu -12 299 1 1983 161 0 0 chrX 150032847 150033139 -12566791 - AluSx SINE Alu -20 292 1 186 43 0 0 chrX 150033430 150033453 -12566477 + (GA)n Simple_repeat Simple_repeat 1 23 0 341 327 9 19 chrX 150033500 150033607 -12566323 - MIR SINE MIR -79 129 24 242 199 176 30 chrX 150033652 150033783 -12566147 - L1ME1 LINE L1 -8 6158 6009 195 69 0 0 chrX 150033992 150034021 -12565909 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 752 215 53 5 chrX 150034865 150035074 -12564856 - MER33 DNA MER1_type -100 224 6 2642 175 102 10 chrX 150035314 150035892 -12564038 - L1MB1 LINE L1 0 6168 5538 1472 199 32 51 chrX 150036112 150036163 -12563767 + MLT1A1 LTR MaLR 1 51 -314 2137 107 3 35 chrX 150036163 150036473 -12563457 + AluSx SINE Alu 1 300 -12 1472 199 32 51 chrX 150036473 150036793 -12563137 + MLT1A1 LTR MaLR 51 365 0 801 283 40 0 chrX 150036839 150037136 -12562794 + L1ME2 LINE L1 5856 6164 0 1541 237 33 20 chrX 150037334 150037731 -12562199 + LTR52 LTR ERVL 13 414 -7 263 128 0 0 chrX 150037962 150038001 -12561929 - MLT1G LTR MaLR -197 393 355 1995 137 3 3 chrX 150038023 150038323 -12561607 + AluSx SINE Alu 1 300 -12 330 26 0 0 chrX 150038518 150038557 -12561373 + (CA)n Simple_repeat Simple_repeat 2 40 0 723 325 53 4 chrX 150039960 150040225 -12559705 - LTR33 LTR ERVL -2 519 242 613 240 63 27 chrX 150041219 150041552 -12558378 - L1M4 LINE L1 -3049 3097 2753 240 246 35 97 chrX 150041571 150041685 -12558245 + MLT1G3 LTR MaLR 20 126 -416 341 203 108 14 chrX 150041720 150041791 -12558139 + MLT1G3 LTR MaLR 149 226 -304 339 220 122 4 chrX 150041791 150041882 -12558048 - MLT1G1 LTR MaLR 0 530 461 577 319 0 6 chrX 150041948 150042108 -12557822 - MLT1G1 LTR MaLR -207 388 230 400 335 53 18 chrX 150042372 150042542 -12557388 + L1MEd LINE L1 926 1101 -5018 373 310 30 55 chrX 150042742 150043013 -12556917 + HAL1 LINE L1 1457 1720 -787 25 0 0 0 chrX 150043143 150043168 -12556762 + AT_rich Low_complexity Low_complexity 1 25 0 368 324 97 18 chrX 150043335 150043829 -12556101 + L1MEd LINE L1 2114 2646 -3483 383 249 53 63 chrX 150043885 150044074 -12555856 + L1MEd LINE L1 2624 2810 -3319 2204 72 0 28 chrX 150044074 150044409 -12555521 + AluY SINE Alu 1 327 0 723 286 115 41 chrX 150044495 150045132 -12554798 + L1MEd LINE L1 3064 3747 -2382 234 130 0 56 chrX 150045246 150045300 -12554630 + L1MCa LINE L1 2005 2055 -4371 313 333 46 0 chrX 150045403 150045511 -12554419 + L2 LINE L2 3197 3309 -4 361 223 76 43 chrX 150045689 150045873 -12554057 - L1MEd LINE L1 -5235 884 695 2356 98 0 0 chrX 150045878 150046184 -12553746 - AluY SINE Alu -5 306 1 1252 197 117 18 chrX 150046197 150046582 -12553348 - L1MA10 LINE L1 -1 6333 5911 198 0 0 0 chrX 150046582 150046604 -12553326 + (TA)n Simple_repeat Simple_repeat 2 23 0 322 294 0 11 chrX 150046604 150046696 -12553234 - L1MC4 LINE L1 -1339 6703 6613 5043 209 49 7 chrX 150046706 150047952 -12551978 - L1MA10 LINE L1 -831 5315 4018 1606 214 166 7 chrX 150047951 150048517 -12551413 - L1MA10 LINE L1 -2418 3728 3073 * 32 0 0 0 chrX 150048519 150048551 -12551379 + AT_rich Low_complexity Low_complexity 1 32 0 768 303 114 58 chrX 150048614 150049265 -12550665 - L1MEd LINE L1 -5432 687 1 187 175 105 35 chrX 150050541 150050598 -12549332 + L2 LINE L2 2828 2888 -384 4205 117 5 2 chrX 150050666 150051266 -12548664 + MER4D LTR ERV1 271 872 0 1849 196 24 32 chrX 150051533 150052095 -12547835 - MLT2A2 LTR ERVL 0 554 1 2318 59 0 0 chrX 150052428 150052701 -12547229 - AluY SINE Alu -32 279 7 10097 30 0 0 chrX 150052702 150054675 -12545255 + L1PA4 LINE L1 4182 6154 -1 2338 162 15 0 chrX 150055063 150055458 -12544472 - MER57A LTR ERV1 0 403 3 1594 133 24 4 chrX 150055460 150055715 -12544215 - MER57A-int LTR ERV1 0 7537 7278 721 144 24 8 chrX 150055715 150055840 -12544090 - LTR54B LTR ERV1 -367 131 5 8559 121 24 23 chrX 150055841 150056821 -12543109 - MER57A-int LTR ERV1 -390 7147 6164 2327 94 3 0 chrX 150056821 150057119 -12542811 + AluSp SINE Alu 1 299 -14 8559 121 24 23 chrX 150057119 150057526 -12542404 - MER57A-int LTR ERV1 -1373 6164 5759 1662 153 75 16 chrX 150057526 150057847 -12542083 + MER61A LTR ERV1 1 340 -3 2454 164 50 37 chrX 150057850 150058468 -12541462 + MER61A-int LTR ERV1 1 707 -4510 540 73 73 11 chrX 150058498 150058634 -12541296 + MER61A-int LTR ERV1 1320 1510 -3707 1763 96 20 28 chrX 150058635 150058884 -12541046 + AluSc SINE Alu 1 247 -62 251 111 0 22 chrX 150058901 150058946 -12540984 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 195 42 0 0 chrX 150059101 150059125 -12540805 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 25055 86 34 24 chrX 150059126 150062811 -12537119 + MER61A-int LTR ERV1 1497 5217 0 1427 172 112 19 chrX 150062811 150063125 -12536805 + MER61A LTR ERV1 1 343 0 7252 143 36 34 chrX 150063125 150064821 -12535109 - MER57A-int LTR ERV1 -1583 4748 3536 429 205 20 40 chrX 150064832 150064983 -12534947 - MER57A-int LTR ERV1 -3051 2072 1925 4834 41 3 2 chrX 150065080 150065665 -12534265 - LTR10C LTR ERV1 -5 586 1 353 129 0 0 chrX 150065671 150065733 -12534197 - MER57A-int LTR ERV1 -3870 2888 2827 412 191 0 11 chrX 150065836 150065925 -12534005 - MER57A-int LTR ERV1 -2890 3441 3354 527 206 12 5 chrX 150065985 150066161 -12533769 - MER57A-int LTR ERV1 -2991 3340 3080 279 245 11 32 chrX 150066168 150066262 -12533668 - MER57A-int LTR ERV1 -3724 1399 1308 277 228 139 0 chrX 150066287 150066388 -12533542 - MER57A-int LTR ERV1 -4651 1947 1833 306 172 0 0 chrX 150066558 150066616 -12533314 - MER34C LTR ERV1 -373 212 155 4820 143 45 6 chrX 150066894 150067686 -12532244 - MER57A-int LTR ERV1 -6714 823 1 2353 152 20 2 chrX 150067686 150068082 -12531848 - MER57A LTR ERV1 0 403 1 356 244 24 12 chrX 150068169 150068251 -12531679 + MIR SINE MIR 68 150 -112 397 354 93 4 chrX 150068366 150068603 -12531327 - L2 LINE L2 -674 2640 2383 479 350 37 16 chrX 150068604 150068850 -12531080 - MIR SINE MIR 0 262 12 403 323 21 21 chrX 150069651 150069837 -12530093 - L2 LINE L2 -954 2360 2175 322 306 12 77 chrX 150069997 150070167 -12529763 + L3 LINE CR1 780 938 -639 747 169 71 9 chrX 150070469 150070675 -12529255 - L1MA4A LINE L1 -198 5953 5739 268 254 0 0 chrX 150070634 150070697 -12529233 + L1PB4 LINE L1 6090 6152 -4 * 1782 149 29 69 chrX 150071116 150071272 -12528658 - MLT1A1 LTR MaLR -4 361 200 2323 105 0 0 chrX 150071272 150071568 -12528362 - AluSx SINE Alu -16 296 1 1782 149 29 69 chrX 150071568 150071786 -12528144 - MLT1A1 LTR MaLR -165 200 2 237 310 26 26 chrX 150072238 150072354 -12527576 - L1MC/D LINE L1 -358 5884 5769 813 259 8 59 chrX 150072379 150072615 -12527315 + L2 LINE L2 1744 1967 -1347 861 285 126 49 chrX 150072625 150073077 -12526853 + L2 LINE L2 2825 3311 -2 185 290 0 87 chrX 150074036 150074105 -12525825 - L3 LINE CR1 -5 1572 1510 * 219 366 49 86 chrX 150074095 150074693 -12525237 - L2 LINE L2 -1 3271 2635 1101 306 81 11 chrX 150074774 150075146 -12524784 - L2 LINE L2 -387 2927 2530 2192 186 88 39 chrX 150075174 150075663 -12524267 + MER44D DNA MER2_type 38 605 0 1089 272 24 130 chrX 150075663 150076515 -12523415 - L2 LINE L2 -790 2524 1764 281 118 20 0 chrX 150076780 150076831 -12523099 + (CA)n Simple_repeat Simple_repeat 2 53 0 227 312 0 0 chrX 150076985 150077062 -12522868 - MLT1J2 LTR MaLR -288 162 86 187 274 142 18 chrX 150077071 150077184 -12522746 - L2 LINE L2 -1937 1377 1251 2334 156 33 19 chrX 150077184 150077608 -12522322 - MSTB1 LTR MaLR 0 432 3 6785 223 65 16 chrX 150077610 150079020 -12520910 - MSTB1-int LTR MaLR 0 1651 154 1738 158 73 17 chrX 150079020 150079375 -12520555 - THE1C LTR MaLR 0 375 1 6785 223 65 16 chrX 150079375 150079536 -12520394 - MSTB1-int LTR MaLR -1497 154 2 2106 159 23 50 chrX 150079540 150079980 -12519950 - MSTB1 LTR MaLR -1 431 4 832 282 26 26 chrX 150079982 150080209 -12519721 - L2 LINE L2 -2058 1256 1030 189 250 45 0 chrX 150080590 150080634 -12519296 - MIR3 SINE MIR -52 156 111 2039 246 19 64 chrX 150082067 150082688 -12517242 + MLT1E LTR MaLR 1 593 0 27 0 0 0 chrX 150082845 150082872 -12517058 + AT_rich Low_complexity Low_complexity 1 27 0 1379 220 19 77 chrX 150083095 150083509 -12516421 - MLT1B LTR MaLR 0 390 1 183 42 0 0 chrX 150083752 150083776 -12516154 + (TG)n Simple_repeat Simple_repeat 1 24 0 1164 190 27 12 chrX 150083817 150084075 -12515855 + L1PA16 LINE L1 5902 6163 -3 691 232 0 0 chrX 150084265 150084390 -12515540 + FLAM_C SINE Alu 2 126 -17 595 114 66 7 chrX 150084398 150084829 -12515101 + (TA)n Simple_repeat Simple_repeat 1 456 0 285 184 61 51 chrX 150085019 150085117 -12514813 - MER97b DNA MER1_type? -350 703 605 438 298 29 53 chrX 150085144 150085352 -12514578 - MER97c DNA MER1_type? -562 528 326 3599 174 6 8 chrX 150085352 150086009 -12513921 - L1MB4 LINE L1 -201 5979 5324 831 205 6 0 chrX 150086009 150086188 -12513742 - AluJb SINE Alu 0 305 126 1360 67 0 0 chrX 150086189 150086353 -12513577 - AluY SINE Alu -15 296 133 2332 82 3 0 chrX 150086353 150086646 -12513284 - AluY SINE Alu -16 295 2 22 0 0 0 chrX 150086651 150086673 -12513257 + AT_rich Low_complexity Low_complexity 1 22 0 263 229 36 6 chrX 150086677 150086843 -12513087 + (TA)n Simple_repeat Simple_repeat 1 171 0 2073 124 3 10 chrX 150087285 150087583 -12512347 - AluSx SINE Alu -16 296 1 712 77 33 44 chrX 150087788 150087970 -12511960 + (TA)n Simple_repeat Simple_repeat 1 180 0 692 85 67 10 chrX 150088009 150088505 -12511425 + (TA)n Simple_repeat Simple_repeat 1 524 0 338 200 31 0 chrX 150088507 150088572 -12511358 - AluJb SINE Alu -176 126 60 436 134 60 20 chrX 150088572 150088871 -12511059 + (TA)n Simple_repeat Simple_repeat 1 311 0 34 24 0 0 chrX 150088877 150088918 -12511012 + AT_rich Low_complexity Low_complexity 1 41 0 189 185 50 0 chrX 150088920 150089039 -12510891 + (TA)n Simple_repeat Simple_repeat 1 125 0 1032 166 6 22 chrX 150089039 150089220 -12510710 + AluJb SINE Alu 135 312 0 247 343 53 30 chrX 150089364 150089533 -12510397 + MIR SINE MIR 17 189 -73 217 306 94 56 chrX 150089755 150089935 -12509995 + MER5A DNA MER1_type 1 187 -2 2140 132 0 0 chrX 150090263 150090567 -12509363 + AluSx SINE Alu 3 306 -6 3521 209 70 18 chrX 150091155 150091935 -12507995 + L1M1 LINE L1 17 837 -6728 666 221 43 6 chrX 150091933 150092096 -12507834 + L1MDa LINE L1 1961 2129 -4411 * 331 373 99 26 chrX 150092172 150092625 -12507305 - L2 LINE L2 -2323 991 506 378 243 78 29 chrX 150093906 150094009 -12505921 - MIR SINE MIR -148 114 7 284 272 24 24 chrX 150094472 150094597 -12505333 + MER113 DNA MER1_type? 394 518 -3 182 265 0 59 chrX 150096098 150096166 -12503764 - MIR SINE MIR -25 237 174 * 406 246 128 57 chrX 150096139 150096350 -12503580 + MIR SINE MIR 6 231 -31 667 267 77 49 chrX 150096814 150097061 -12502869 + MIR SINE MIR 8 261 -1 571 283 141 13 chrX 150097179 150097507 -12502423 - L2 LINE L2 -211 3102 2745 336 272 160 54 chrX 150097501 150097795 -12502135 - L2 LINE L2 -2 3311 2987 * 2426 105 0 0 chrX 150097823 150098136 -12501794 + AluSq SINE Alu 1 313 0 2200 101 0 0 chrX 150098953 150099265 -12500665 - AluSg SINE Alu 0 310 1 729 262 11 27 chrX 150099287 150099474 -12500456 + MER5A DNA MER1_type 1 184 -5 598 292 12 6 chrX 150100289 150100450 -12499480 + MIR SINE MIR 2 163 -99 620 102 219 15 chrX 150100450 150100469 -12499461 + MER21A LTR ERV1 1 15 -916 330 26 0 0 chrX 150100469 150100508 -12499422 + (TG)n Simple_repeat Simple_repeat 2 40 0 620 102 219 15 chrX 150100508 150100625 -12499305 + MER21A LTR ERV1 15 165 -766 2951 151 37 28 chrX 150100688 150101232 -12498698 + MER21A LTR ERV1 376 924 -7 2074 127 56 10 chrX 150101558 150101952 -12497978 + L1MA3 LINE L1 5894 6305 0 1973 190 25 15 chrX 150102498 150102904 -12497026 + MSTB LTR MaLR 17 426 0 7335 192 97 5 chrX 150102904 150104417 -12495513 + MSTB-int LTR MaLR 1 1651 0 2153 174 49 7 chrX 150104417 150104826 -12495104 + MSTB LTR MaLR 1 426 0 1978 231 21 41 chrX 150104827 150105392 -12494538 + MER31-int LTR ERV1 454 1008 -3928 1262 224 19 45 chrX 150105392 150105704 -12494226 + AluJo SINE Alu 1 304 -8 1978 231 21 41 chrX 150105704 150105748 -12494182 + MER31-int LTR ERV1 1008 1051 -3885 354 23 0 0 chrX 150105784 150105827 -12494103 + (TG)n Simple_repeat Simple_repeat 2 44 0 1743 150 83 3 chrX 150105864 150106203 -12493727 + Ricksha DNA DNA 123 488 -1558 491 242 13 27 chrX 150106069 150106218 -12493712 + MLT2D LTR ERVL 9 155 -398 * 10554 161 25 21 chrX 150106220 150108270 -12491660 + Ricksha DNA DNA 1188 3246 0 275 187 44 178 chrX 150108272 150108587 -12491343 + MER31-int LTR ERV1 1163 1435 -3501 208 139 0 0 chrX 150108587 150108623 -12491307 + (TA)n Simple_repeat Simple_repeat 2 37 0 313 250 0 62 chrX 150108626 150108722 -12491208 - L1MC4 LINE L1 -1340 6702 6613 416 167 24 8 chrX 150108729 150108855 -12491075 + (TA)n Simple_repeat Simple_repeat 1 128 0 456 259 102 50 chrX 150109042 150109283 -12490647 + MER31-int LTR ERV1 1704 1931 -3005 2342 65 10 0 chrX 150109283 150109573 -12490357 + AluSg SINE Alu 1 293 -17 456 259 102 50 chrX 150109573 150109772 -12490158 + MER31-int LTR ERV1 1931 2167 -2769 1970 131 0 0 chrX 150109891 150110204 -12489726 - AluY SINE Alu 0 313 1 1876 256 45 49 chrX 150110432 150110553 -12489377 + L1MCb LINE L1 104 224 -5821 2225 85 0 4 chrX 150110553 150110886 -12489044 - AluSg SINE Alu 0 333 2 1876 256 45 49 chrX 150110886 150111115 -12488815 + L1MCb LINE L1 224 452 -5593 1899 230 29 40 chrX 150111115 150111641 -12488289 - MLT2B1 LTR ERVL 0 520 1 1876 256 45 49 chrX 150111641 150112070 -12487860 + L1MCb LINE L1 452 882 -5163 1640 216 59 97 chrX 150112070 150112719 -12487211 + MER92B LTR ERV1 1 624 -12 2667 235 50 61 chrX 150112737 150113557 -12486373 + L1MCb LINE L1 894 1722 -5023 2038 108 52 0 chrX 150113557 150113843 -12486087 + AluSp SINE Alu 1 301 -12 2667 235 50 61 chrX 150113843 150114636 -12485294 + L1MCb LINE L1 1722 2697 -4048 548 242 48 8 chrX 150115390 150115514 -12484416 - L2 LINE L2 -8 3305 3177 378 304 9 27 chrX 150115580 150115692 -12484238 - MIR SINE MIR -66 142 33 215 193 35 0 chrX 150116327 150116384 -12483546 + T-rich Low_complexity Low_complexity 3 61 0 216 413 54 31 chrX 150116437 150117014 -12482916 + L2 LINE L2 2243 2832 -482 204 370 59 7 chrX 150117022 150117157 -12482773 - L2 LINE L2 -513 2801 2660 237 336 19 19 chrX 150117196 150117303 -12482627 - L3 LINE CR1 -235 1342 1236 3019 271 67 7 chrX 150117310 150118176 -12481754 - L2 LINE L2 -518 2796 1879 819 263 127 40 chrX 150118176 150118680 -12481250 - MLT1G1 LTR MaLR 0 595 8 405 41 0 0 chrX 150118680 150118729 -12481201 + AluY SINE Alu 14 62 -256 180 0 0 0 chrX 150118748 150118768 -12481162 + (A)n Simple_repeat Simple_repeat 1 20 0 11614 189 30 5 chrX 150118777 150121084 -12478846 + L1M1 LINE L1 204 2566 -4999 6032 169 7 2 chrX 150121078 150122217 -12477713 - L1P LINE L1 -1013 5133 3989 * 1181 184 40 0 chrX 150122217 150122440 -12477490 + MSTB LTR MaLR 195 426 0 1782 132 90 34 chrX 150122484 150122839 -12477091 + THE1C LTR MaLR 1 375 0 1581 206 0 0 chrX 150122855 150123136 -12476794 - AluJo SINE Alu -31 281 1 1984 194 24 10 chrX 150123136 150123843 -12476087 - L1M3 LINE L1 -567 5616 4899 227 326 84 0 chrX 150125551 150125646 -12474284 + L2 LINE L2 3155 3257 -15 1221 175 0 9 chrX 150126011 150126239 -12473691 + L1PA15 LINE L1 5940 6165 0 334 313 92 18 chrX 150126262 150126425 -12473505 - L1ME LINE L1 -530 5632 5458 266 274 0 0 chrX 150126485 150126547 -12473383 - MIR SINE MIR -123 139 78 1869 158 117 31 chrX 150127033 150127425 -12472505 + MSTA LTR MaLR 1 426 -2 403 240 93 49 chrX 150127730 150127913 -12472017 + MIR SINE MIR 71 261 -1 2526 47 3 0 chrX 150128082 150128382 -12471548 + AluY SINE Alu 3 303 -8 614 291 44 10 chrX 150128587 150128790 -12471140 + MER63A DNA MER1_type 1 210 0 339 269 64 84 chrX 150128998 150129247 -12470683 + L1ME4a LINE L1 5873 6116 -5 263 226 38 75 chrX 150129597 150129783 -12470147 - L1MEc LINE L1 -4164 2232 2054 28 29 0 0 chrX 150129896 150129931 -12469999 + AT_rich Low_complexity Low_complexity 1 35 0 2332 50 0 3 chrX 150130097 150130408 -12469522 - AluY SINE Alu 0 310 1 2604 258 75 17 chrX 150130461 150131438 -12468492 + L1MEc LINE L1 42 1074 -5322 245 164 0 18 chrX 150131438 150131493 -12468437 + MER116 DNA Mariner 27 80 0 188 35 35 0 chrX 150131618 150131647 -12468283 + (TA)n Simple_repeat Simple_repeat 1 30 0 2483 234 131 15 chrX 150131665 150133071 -12466859 + L1MEc LINE L1 1974 3536 -2679 1450 193 154 14 chrX 150133072 150133430 -12466500 + MLT2C2 LTR ERVL 6 413 -51 329 221 41 0 chrX 150133438 150133560 -12466370 + (TA)n Simple_repeat Simple_repeat 2 128 0 263 95 32 32 chrX 150133581 150133644 -12466286 + (TA)n Simple_repeat Simple_repeat 1 63 0 333 123 0 31 chrX 150133646 150133711 -12466219 + MLT2C2 LTR ERVL 458 520 0 287 150 38 38 chrX 150133712 150133792 -12466138 + HERVL-C2 LTR ERVL 2 81 -5573 671 296 42 21 chrX 150133807 150134091 -12465839 + HERVL-C2 LTR ERVL 211 500 -5264 * 2171 157 9 69 chrX 150134079 150134545 -12465385 + ERVL LTR ERVL 3477 3914 -1850 425 270 116 26 chrX 150134563 150134952 -12464978 - MER97b DNA MER1_type? -25 1028 605 381 298 29 53 chrX 150134979 150135187 -12464743 - MER97b DNA MER1_type? -525 528 326 3395 174 6 8 chrX 150135187 150135844 -12464086 - L1MB4 LINE L1 -201 5979 5324 834 205 6 0 chrX 150135844 150136023 -12463907 - AluJb SINE Alu 0 305 126 2005 128 0 10 chrX 150136024 150136188 -12463742 - AluSx SINE Alu -15 297 136 2519 44 0 3 chrX 150136188 150136484 -12463446 - AluY SINE Alu -16 295 1 2005 128 0 10 chrX 150136484 150136616 -12463314 - AluSx SINE Alu -176 136 4 349 275 50 8 chrX 150136700 150136820 -12463110 - MER97a DNA MER1_type? -683 211 87 502 240 116 17 chrX 150136826 150137059 -12462871 - L1ME2 LINE L1 -167 5997 5742 557 237 41 122 chrX 150137314 150137483 -12462447 + MLT2B2 LTR ERVL 290 471 -44 2215 122 51 20 chrX 150137483 150137836 -12462094 - THE1B LTR MaLR 0 364 1 11500 93 23 1 chrX 150137836 150139381 -12460549 - THE1B-int LTR MaLR 0 1580 1 2234 122 48 20 chrX 150139381 150139733 -12460197 - THE1B LTR MaLR 0 364 3 557 237 41 122 chrX 150139733 150139806 -12460124 + MLT2B2 LTR ERVL 468 514 -1 469 230 35 25 chrX 150139807 150140000 -12459930 + L1ME1 LINE L1 5828 6022 -162 486 159 0 0 chrX 150140276 150140364 -12459566 + (TA)n Simple_repeat Simple_repeat 2 89 0 577 259 148 6 chrX 150140490 150140652 -12459278 - MER5A DNA MER1_type -1 188 4 2399 100 0 6 chrX 150141245 150141556 -12458374 + AluSx SINE Alu 1 309 -3 300 312 18 42 chrX 150143630 150143789 -12456141 + MIR3 SINE MIR 12 172 -36 21 0 0 0 chrX 150143829 150143850 -12456080 + AT_rich Low_complexity Low_complexity 1 21 0 1490 180 43 25 chrX 150144050 150144372 -12455558 + MLT2C1 LTR ERVL 1 328 -69 273 262 24 0 chrX 150144391 150144517 -12455413 + (TA)n Simple_repeat Simple_repeat 2 130 0 1465 203 41 17 chrX 150144591 150144936 -12454994 + MLT1C LTR MaLR 115 467 0 230 132 38 19 chrX 150144936 150144984 -12454946 + MLT2C1 LTR ERVL 470 518 -2 4823 165 8 3 chrX 150145151 150146032 -12453898 - L1MA4A LINE L1 -2 6301 5417 12484 219 38 29 chrX 150146370 150150598 -12449332 + L1PB3 LINE L1 3 3314 -3556 2255 166 31 14 chrX 150150598 150151019 -12448911 + MSTA LTR MaLR 1 428 0 12484 219 38 29 chrX 150151019 150154601 -12445329 + L1PB3 LINE L1 3314 6863 -7 3320 219 33 43 chrX 150154619 150156224 -12443706 - L1MB1 LINE L1 -129 6039 4451 30 69 0 0 chrX 150156277 150156335 -12443595 + AT_rich Low_complexity Low_complexity 1 58 0 797 303 73 52 chrX 150157350 150157835 -12442095 - L2 LINE L2 -208 3064 2579 460 323 51 32 chrX 150157981 150158383 -12441547 + LTR33 LTR ERVL 77 512 -9 4234 185 6 8 chrX 150160412 150161240 -12438690 + L1PB4 LINE L1 5330 6155 -1 29 28 0 0 chrX 150161348 150161384 -12438546 + AT_rich Low_complexity Low_complexity 1 36 0 3104 177 17 8 chrX 150161388 150162027 -12437903 - L1MA6 LINE L1 -7 6293 5649 9815 208 32 24 chrX 150162027 150164164 -12435766 + L1M2 LINE L1 824 2943 -3905 2035 193 65 0 chrX 150164164 150164563 -12435367 + MSTB LTR MaLR 2 426 0 9815 208 32 24 chrX 150164563 150165565 -12434365 + L1M2 LINE L1 2943 4001 -2847 1563 214 100 89 chrX 150165565 150166113 -12433817 - MLT2B3 LTR ERVL 0 554 1 9815 208 32 24 chrX 150166113 150166828 -12433102 + L1M2 LINE L1 4001 4709 -2139 2285 156 73 2 chrX 150166828 150167226 -12432704 + MSTB LTR MaLR 1 426 0 2278 200 9 11 chrX 150167226 150167685 -12432245 + MSTB-int LTR MaLR 1 458 -1193 1983 130 148 21 chrX 150167688 150168065 -12431865 - MSTA LTR MaLR -3 425 1 4938 217 7 2 chrX 150168065 150169015 -12430915 + MSTB-int LTR MaLR 454 1408 -243 961 291 21 0 chrX 150169242 150169476 -12430454 + MIR SINE MIR 24 262 0 276 309 99 44 chrX 150169935 150170116 -12429814 - L2 LINE L2 -10 3303 3113 206 309 79 20 chrX 150171229 150171381 -12428549 - L2 LINE L2 -1269 2045 1885 285 303 118 20 chrX 150172037 150172189 -12427741 - MIR SINE MIR 0 262 96 429 332 30 27 chrX 150172737 150173035 -12426895 + L2 LINE L2 2150 2448 -866 270 250 0 0 chrX 150173141 150173193 -12426737 - L2 LINE L2 0 3313 3262 184 268 0 36 chrX 150173211 150173267 -12426663 + L2 LINE L2 2918 2971 -301 31 0 0 0 chrX 150174194 150174225 -12425705 + AT_rich Low_complexity Low_complexity 1 31 0 222 62 0 0 chrX 150175003 150175035 -12424895 + (TG)n Simple_repeat Simple_repeat 2 33 0 1976 104 45 3 chrX 150175647 150175936 -12423994 - AluSg SINE Alu -9 301 1 183 182 23 45 chrX 150176252 150176296 -12423634 - MIR SINE MIR 0 262 220 419 262 135 91 chrX 150176333 150176764 -12423166 - LTR16A1 LTR ERVL -7 450 1 1472 143 115 99 chrX 150176776 150177160 -12422770 + MLT1B LTR MaLR 1 390 0 317 159 16 0 chrX 150177925 150177988 -12421942 + (TA)n Simple_repeat Simple_repeat 1 64 0 549 265 60 0 chrX 150178004 150178155 -12421775 + MIR SINE MIR 91 250 -12 481 127 0 0 chrX 150179123 150179194 -12420736 - L1M LINE L1 -787 5393 5323 2013 152 0 0 chrX 150179194 150179484 -12420446 - AluSx SINE Alu -14 298 9 4422 222 154 10 chrX 150179753 150181148 -12418782 + L1P LINE L1 2728 4323 -1823 1166 57 0 0 chrX 150181178 150181337 -12418593 + L1P LINE L1 5003 5161 -985 564 219 16 16 chrX 150181336 150181528 -12418402 + L1 LINE L1 2982 3173 -2973 * 6111 94 24 4 chrX 150181548 150182771 -12417159 + L1PA11 LINE L1 4943 6174 0 4034 177 11 5 chrX 150182791 150183575 -12416355 + L1 LINE L1 4336 5124 -1022 1185 187 25 0 chrX 150183575 150183810 -12416120 - L1M2 LINE L1 -625 5666 5426 2247 88 3 0 chrX 150183812 150184109 -12415821 - AluY SINE Alu -13 298 1 250 225 28 0 chrX 150184145 150184216 -12415714 + L1MB7 LINE L1 6112 6184 0 21 36 0 0 chrX 150184291 150184319 -12415611 + AT_rich Low_complexity Low_complexity 1 28 0 1193 189 12 0 chrX 150184319 150184568 -12415362 - L1MA6 LINE L1 0 6300 6049 785 283 93 0 chrX 150186383 150186609 -12413321 + MIR SINE MIR 15 261 -1 6105 213 62 10 chrX 150186709 150189526 -12410404 + L1M3f LINE L1 3 2941 -3387 4837 196 59 13 chrX 150189529 150190697 -12409233 + L1M3f LINE L1 3277 4498 -1830 2739 271 26 48 chrX 150190713 150190794 -12409136 + L1PA12 LINE L1 7 88 -7493 4047 169 69 12 chrX 150190794 150191715 -12408215 + L1PA8A LINE L1 5163 6130 -1 2739 271 26 48 chrX 150191715 150192578 -12407352 + L1PA12 LINE L1 88 931 -6650 1584 217 6 3 chrX 150192576 150192940 -12406990 + L1PA12 LINE L1 3323 3687 -3897 * 9683 227 26 38 chrX 150192949 150194646 -12405284 + L1PA12 LINE L1 1539 3255 -4329 270 0 0 0 chrX 150194646 150194676 -12405254 + (CA)n Simple_repeat Simple_repeat 2 31 0 9683 227 26 38 chrX 150194676 150197402 -12402528 + L1PA12 LINE L1 3255 5848 -1736 4109 231 18 14 chrX 150197438 150198404 -12401526 + L1MA4 LINE L1 11 979 -6586 3301 191 14 3 chrX 150198399 150199683 -12400247 + L1MA4 LINE L1 3153 4451 -3114 * 831 121 15 0 chrX 150199710 150199842 -12400088 + L1MA1 LINE L1 6169 6302 0 4721 180 33 13 chrX 150199844 150200075 -12399855 + L1MA4 LINE L1 6398 6623 -1096 3738 16 0 0 chrX 150200075 150200527 -12399403 + L1PA4 LINE L1 5717 6174 0 4721 180 33 13 chrX 150200527 150201595 -12398335 + L1MA4 LINE L1 6623 7717 -2 279 229 36 0 chrX 150201676 150201759 -12398171 + L1ME LINE L1 5733 5818 -303 592 239 75 35 chrX 150202717 150202918 -12397012 - MER3 DNA MER1_type 0 209 1 203 103 26 0 chrX 150203809 150203848 -12396082 + (CA)n Simple_repeat Simple_repeat 1 40 0 27 0 0 0 chrX 150203929 150203956 -12395974 + AT_rich Low_complexity Low_complexity 1 27 0 267 246 0 0 chrX 150204184 150204245 -12395685 + CT-rich Low_complexity Low_complexity 1 61 0 498 265 51 0 chrX 150205621 150205738 -12394192 - L2 LINE L2 0 3313 3191 388 261 61 0 chrX 150206008 150206123 -12393807 + L2 LINE L2 3191 3312 -1 1965 124 17 20 chrX 150206270 150206569 -12393361 + AluSx SINE Alu 1 298 -14 209 347 32 0 chrX 150207934 150208029 -12391901 - MIR SINE MIR -100 162 65 1457 280 42 37 chrX 150208693 150209027 -12390903 - L2 LINE L2 0 3313 2974 2105 202 62 21 chrX 150209027 150209512 -12390418 + MLT1D LTR MaLR 1 505 0 1457 280 42 37 chrX 150209512 150209754 -12390176 - L2 LINE L2 -339 2974 2735 2435 153 8 38 chrX 150209985 150210504 -12389426 + L1MC/D LINE L1 5197 5730 -512 207 0 0 0 chrX 150210504 150210527 -12389403 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2268 94 0 7 chrX 150210530 150210816 -12389114 - AluSg SINE Alu -25 285 2 2435 153 8 38 chrX 150210816 150210858 -12389072 + L1MC/D LINE L1 5732 5744 -498 601 257 88 122 chrX 150210888 150211378 -12388552 + L2 LINE L2 2841 3313 0 24 0 0 0 chrX 150212237 150212261 -12387669 + AT_rich Low_complexity Low_complexity 1 24 0 261 264 27 45 chrX 150212385 150212495 -12387435 + MIR3 SINE MIR 98 205 -3 2130 115 7 0 chrX 150212634 150212965 -12386965 - AluSx SINE Alu 0 312 1 406 235 29 15 chrX 150213859 150213995 -12385935 - L1ME4a LINE L1 -202 5919 5782 28 29 0 0 chrX 150215630 150215665 -12384265 + AT_rich Low_complexity Low_complexity 1 35 0 310 162 29 19 chrX 150215665 150215770 -12384160 + (TA)n Simple_repeat Simple_repeat 1 106 0 219 167 0 0 chrX 150215870 150215912 -12384018 + CT-rich Low_complexity Low_complexity 3 44 0 1200 144 0 108 chrX 150215914 150216191 -12383739 + L1MA9 LINE L1 5698 5944 -368 1254 299 94 13 chrX 150216194 150216715 -12383215 + L2 LINE L2 1757 2319 -995 528 316 45 26 chrX 150216715 150216984 -12382946 - MLT1I LTR MaLR -13 396 123 689 228 44 28 chrX 150216984 150217164 -12382766 + L2 LINE L2 3128 3310 -3 338 319 43 33 chrX 150217236 150217446 -12382484 - L1M4 LINE L1 -3147 2999 2788 17968 203 32 45 chrX 150217808 150223036 -12376894 + L1MA2 LINE L1 16 5103 -2462 222 37 0 0 chrX 150223036 150223063 -12376867 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 17968 203 32 45 chrX 150223063 150223370 -12376560 + L1MA2 LINE L1 5103 5412 -2153 2395 62 0 3 chrX 150225221 150225513 -12374417 + AluY SINE Alu 1 291 -20 2336 63 0 3 chrX 150225690 150225974 -12373956 + AluSc SINE Alu 1 283 -26 1760 174 3 11 chrX 150226036 150226386 -12373544 + L1MA2 LINE L1 5394 5740 -1825 5737 124 52 16 chrX 150226387 150227563 -12372367 + L1MA2 LINE L1 6482 7719 -4 213 250 0 47 chrX 150227917 150227981 -12371949 + C-rich Low_complexity Low_complexity 1 61 0 486 196 0 0 chrX 150228000 150228107 -12371823 + (CA)n Simple_repeat Simple_repeat 2 108 0 273 258 11 0 chrX 150228215 150228304 -12371626 + L1P LINE L1 2655 2744 -3402 3674 149 9 2 chrX 150228309 150229294 -12370636 - L1P4 LINE L1 -524 5639 4651 1565 106 4 4 chrX 150229294 150229519 -12370411 + L1PA13 LINE L1 5914 6149 -14 1824 224 13 9 chrX 150229521 150230048 -12369882 + L1P LINE L1 2740 3268 -2878 * 13434 155 21 5 chrX 150230044 150232858 -12367072 + L1PA12 LINE L1 1 3128 -4456 2520 122 5 10 chrX 150232862 150233257 -12366673 + THE1C-int LTR MaLR 1188 1580 0 1647 136 76 60 chrX 150233257 150233626 -12366304 + THE1C LTR MaLR 1 375 0 1809 203 25 40 chrX 150233626 150234070 -12365860 - MLT1C LTR MaLR -16 451 15 294 200 0 0 chrX 150234075 150234145 -12365785 + L1 LINE L1 4771 4840 -1306 8390 206 20 11 chrX 150234280 150234461 -12365469 + L1MB1 LINE L1 3142 3320 -2848 803 221 83 71 chrX 150234461 150234800 -12365130 + MER2 DNA MER2_type 2 344 0 8390 206 20 11 chrX 150234800 150236762 -12363168 + L1MB1 LINE L1 3320 5314 -854 396 0 0 0 chrX 150236762 150236806 -12363124 + (CA)n Simple_repeat Simple_repeat 1 44 0 8390 206 20 11 chrX 150236806 150237353 -12362577 + L1MB1 LINE L1 5314 5855 -313 1628 170 13 10 chrX 150237437 150237743 -12362187 + L1MB1 LINE L1 5861 6167 -1 412 103 0 39 chrX 150237813 150237891 -12362039 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 1177 282 60 30 chrX 150237909 150238614 -12361316 - L1MCb LINE L1 -3311 3253 2528 1480 276 36 4 chrX 150238622 150239147 -12360783 - L1MCb LINE L1 -4924 1121 580 1136 214 130 46 chrX 150239412 150239843 -12360087 - MLT1C LTR MaLR 0 467 1 1506 207 113 5 chrX 150240622 150241013 -12358917 + MLT1D LTR MaLR 73 505 0 26 0 0 0 chrX 150242170 150242196 -12357734 + AT_rich Low_complexity Low_complexity 1 26 0 1892 223 55 32 chrX 150242347 150242841 -12357089 - MLT1D LTR MaLR 0 505 1 776 135 15 0 chrX 150243691 150243824 -12356106 + L1PA13 LINE L1 6025 6159 -4 414 234 42 54 chrX 150244263 150244430 -12355500 + L1ME4a LINE L1 5946 6110 -11 189 372 104 30 chrX 150245546 150245710 -12354220 - L2 LINE L2 -338 2976 2801 1025 312 119 2 chrX 150245741 150246161 -12353769 + L2 LINE L2 2185 2653 -661 216 0 0 0 chrX 150246172 150246196 -12353734 + (ACTAG)n Simple_repeat Simple_repeat 5 28 0 955 313 120 19 chrX 150246554 150247116 -12352814 + L2 LINE L2 2678 3312 -1 2027 106 35 0 chrX 150247489 150247771 -12352159 - AluSx SINE Alu -15 297 6 404 364 122 16 chrX 150247935 150248320 -12351610 - L2 LINE L2 -908 2406 1981 258 274 103 91 chrX 150248418 150248593 -12351337 - L2 LINE L2 0 3313 3137 4929 174 43 21 chrX 150249054 150251057 -12348873 + L1MA8 LINE L1 4256 6286 -5 449 228 33 44 chrX 150251178 150251411 -12348519 + MLT1A1 LTR MaLR 1 310 -55 1927 188 11 3 chrX 150251511 150251889 -12348041 - L1MA9 LINE L1 -350 5962 5582 1551 196 24 7 chrX 150251897 150252188 -12347742 + MSTA LTR MaLR 133 428 0 1097 211 53 32 chrX 150252188 150252542 -12347388 - L1MA9 LINE L1 -727 5585 5203 723 60 30 0 chrX 150252803 150252903 -12347027 + L1PA7 LINE L1 6052 6154 0 200 100 86 29 chrX 150254014 150254084 -12345846 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 22 35 0 0 chrX 150254474 150254503 -12345427 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 150254642 150254663 -12345267 + AT_rich Low_complexity Low_complexity 1 21 0 285 304 136 0 chrX 150257575 150257700 -12342230 - MIR SINE MIR -107 155 14 3345 246 44 3 chrX 150259550 150260523 -12339407 - L1M2 LINE L1 -4552 2657 1403 368 286 0 53 chrX 150262313 150262446 -12337484 + L2 LINE L2 2918 3043 -229 1822 137 195 3 chrX 150262458 150262817 -12337113 - MSTA LTR MaLR 0 428 1 4447 157 11 19 chrX 150262817 150263606 -12336324 - MSTA-int LTR MaLR 0 1580 798 851 238 76 116 chrX 150263709 150264210 -12335720 + MER41C LTR ERV1 72 552 -2 479 305 12 12 chrX 150264234 150264398 -12335532 - LTR33 LTR ERVL -321 200 37 3697 206 98 53 chrX 150265257 150266319 -12333611 + LTR28 LTR ERV1 1 1735 -20 2133 158 114 5 chrX 150266518 150266904 -12333026 + MSTA LTR MaLR 1 428 0 3608 183 32 3 chrX 150266904 150267594 -12332336 + MSTA-int LTR MaLR 1 710 -941 199 309 0 0 chrX 150267956 150268011 -12331919 - L2 LINE L2 -562 2752 2698 214 264 14 101 chrX 150268228 150268376 -12331554 - L2 LINE L2 -824 2490 2356 273 289 0 13 chrX 150268546 150268622 -12331308 + MIR SINE MIR 49 123 -139 559 282 47 33 chrX 150268667 150268880 -12331050 + MIR SINE MIR 45 260 -2 678 289 89 54 chrX 150270677 150271106 -12328824 + MLT1J1 LTR MaLR 1 444 -2 1941 145 51 14 chrX 150271294 150271645 -12328285 - L1MA9 LINE L1 0 6312 5949 1897 136 3 26 chrX 150271653 150272204 -12327726 + MER4A LTR ERV1 1 664 0 2296 113 120 14 chrX 150272206 150272661 -12327269 + MER4A-int LTR ERV1 1 555 -6043 297 0 0 0 chrX 150272667 150272700 -12327230 + (TTG)n Simple_repeat Simple_repeat 2 34 0 292 98 0 0 chrX 150272748 150272789 -12327141 + MER4A-int LTR ERV1 752 792 -5806 1264 236 77 20 chrX 150272855 150273207 -12326723 + MER4A-int LTR ERV1 1853 2224 -4107 213 39 0 0 chrX 150273217 150273243 -12326687 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1714 136 8 0 chrX 150273244 150273501 -12326429 + MER4A-int LTR ERV1 208 466 -6292 11828 136 65 30 chrX 150273501 150275857 -12324073 + MER4A-int LTR ERV1 4149 6588 -10 744 122 4 156 chrX 150275873 150276136 -12323794 + MER4A LTR ERV1 1 292 -372 366 23 0 0 chrX 150326343 150326386 -12273544 + (TG)n Simple_repeat Simple_repeat 2 44 0 180 158 0 0 chrX 150327095 150327133 -12272797 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 254 333 0 0 chrX 150327228 150327297 -12272633 - L2 LINE L2 -1 3312 3244 850 217 51 0 chrX 150327304 150327479 -12272451 - MER5A DNA MER1_type 0 189 6 410 309 19 102 chrX 150327558 150327814 -12272116 - L2 LINE L2 -179 3093 2859 217 185 169 15 chrX 150327821 150327886 -12272044 + L2 LINE L2 3197 3271 -1 305 257 0 0 chrX 150328481 150328555 -12271375 + MLT1K LTR MaLR 509 582 -6 277 259 53 29 chrX 150329127 150329279 -12270651 + MIR SINE MIR 2 153 -63 285 330 21 11 chrX 150332110 150332204 -12267726 - MIR SINE MIR -79 129 35 479 262 121 0 chrX 150332376 150332525 -12267405 - MIR SINE MIR -16 246 80 186 209 0 0 chrX 150332596 150332639 -12267291 + CT-rich Low_complexity Low_complexity 16 58 0 348 311 74 15 chrX 150334198 150334333 -12265597 - L2 LINE L2 -952 2362 2220 988 196 10 5 chrX 150334346 150334545 -12265385 + MER3 DNA MER1_type 9 208 -1 386 257 58 18 chrX 150336781 150336952 -12262978 - MER20B DNA MER1_type -8 775 598 916 279 17 14 chrX 150337655 150338002 -12261928 - MER20B DNA MER1_type -374 409 62 216 0 0 0 chrX 150338002 150338026 -12261904 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 846 364 44 40 chrX 150338297 150339047 -12260883 + L2 LINE L2 760 1512 -1802 278 321 69 31 chrX 150339245 150339404 -12260526 + MIR SINE MIR 88 252 -10 223 227 0 0 chrX 150339413 150339457 -12260473 + (CAG)n Simple_repeat Simple_repeat 1 44 0 187 333 56 0 chrX 150339457 150339529 -12260401 + L2 LINE L2 1909 1984 -1330 298 248 69 30 chrX 150339874 150339975 -12259955 + L2 LINE L2 3201 3305 -8 236 245 0 0 chrX 150340531 150340580 -12259350 + (TG)n Simple_repeat Simple_repeat 2 50 0 2459 67 3 0 chrX 150340800 150341100 -12258830 + AluSp SINE Alu 1 301 -12 10330 185 23 12 chrX 150341158 150341892 -12258038 - L1PA15 LINE L1 -4 6161 5436 2220 155 23 48 chrX 150341892 150342331 -12257599 + MSTA LTR MaLR 1 428 0 10330 185 23 12 chrX 150342331 150345092 -12254838 - L1PA15 LINE L1 -729 5436 2627 1399 341 82 46 chrX 150345650 150347010 -12252920 - L2 LINE L2 -1463 1851 443 285 193 193 23 chrX 150347269 150347357 -12252573 - L2 LINE L2 -2901 413 311 768 316 4 22 chrX 150347391 150347666 -12252264 + L2 LINE L2 2469 2738 -576 286 291 48 90 chrX 150347748 150347937 -12251993 + L2 LINE L2 2902 3082 -190 527 221 29 0 chrX 150348474 150348614 -12251316 - L1MD3 LINE L1 -13 7982 7839 308 365 156 6 chrX 150348857 150349024 -12250906 + MIR3 SINE MIR 6 197 -11 1401 274 47 7 chrX 150349750 150350199 -12249731 - MLT1C LTR MaLR 0 467 1 2061 98 56 0 chrX 150350326 150350612 -12249318 + AluSx SINE Alu 3 304 -8 28 29 0 0 chrX 150350666 150350701 -12249229 + AT_rich Low_complexity Low_complexity 1 35 0 315 214 77 77 chrX 150350820 150350937 -12248993 + MIR3 SINE MIR 87 203 -5 2433 79 0 0 chrX 150351517 150351822 -12248108 - AluSc SINE Alu -4 305 1 337 316 67 91 chrX 150351886 150352094 -12247836 + L2 LINE L2 2451 2662 -610 551 137 20 0 chrX 150352094 150352196 -12247734 - L1MA4 LINE L1 -9 6291 6188 337 316 67 91 chrX 150352196 150352612 -12247318 + L2 LINE L2 2662 3060 -212 1302 296 43 25 chrX 150352953 150353560 -12246370 - L1MCb LINE L1 -5427 618 1 291 276 69 35 chrX 150353572 150353717 -12246213 + L2 LINE L2 3120 3269 -44 1977 148 0 25 chrX 150353822 150354175 -12245755 + AluSx SINE Alu 3 347 0 5843 235 52 30 chrX 150354212 150354733 -12245197 + L1MC3 LINE L1 2713 3221 -2925 2147 108 0 13 chrX 150354733 150355049 -12244881 + AluSx SINE Alu 1 312 0 5843 235 52 30 chrX 150355049 150357081 -12242849 + L1MC3 LINE L1 3221 4143 -2003 7559 28 0 1 chrX 150357081 150358756 -12241174 + L1PA4 LINE L1 4476 6150 -5 5843 235 52 30 chrX 150358756 150360046 -12239884 + L1MC3 LINE L1 4143 5403 -743 1267 180 4 0 chrX 150360054 150360282 -12239648 - MER46A DNA MER2_type -6 230 2 1286 199 50 35 chrX 150360282 150360679 -12239251 + L1MC3 LINE L1 6643 7045 -740 317 267 0 22 chrX 150360679 150360769 -12239161 - L1MC4 LINE L1 -1339 6703 6616 * 320 258 22 0 chrX 150360727 150360816 -12239114 + L1MC4 LINE L1 6614 6704 -1338 213 122 0 61 chrX 150360817 150360866 -12239064 + (TA)n Simple_repeat Simple_repeat 1 46 0 356 267 74 0 chrX 150360866 150361001 -12238929 - L1MC3 LINE L1 -798 6987 6843 189 0 0 0 chrX 150361039 150361060 -12238870 + (TA)n Simple_repeat Simple_repeat 1 21 0 1575 184 10 0 chrX 150361132 150361420 -12238510 + L1MC3 LINE L1 7038 7328 -457 662 218 19 6 chrX 150361422 150361578 -12238352 - MLT1A1 LTR MaLR -3 362 205 2663 75 8 34 chrX 150361583 150361930 -12238000 - L1PA10 LINE L1 0 6168 5830 2292 110 0 3 chrX 150361930 150362238 -12237692 - AluSg SINE Alu -3 307 1 2663 75 8 34 chrX 150362238 150362277 -12237653 - L1PA10 LINE L1 -338 5830 5792 366 177 38 0 chrX 150362277 150362356 -12237574 + MLT1E3 LTR MaLR 543 624 0 1356 247 12 18 chrX 150362406 150362746 -12237184 - L2 LINE L2 -580 2734 2397 563 249 73 11 chrX 150362878 150363055 -12236875 - MIR SINE MIR -11 251 64 270 277 0 142 chrX 150363052 150363122 -12236808 + MIR SINE MIR 8 50 -212 * 2118 102 7 10 chrX 150363122 150363415 -12236515 + AluSg SINE Alu 1 292 -18 270 277 0 142 chrX 150363415 150363485 -12236445 + MIR SINE MIR 50 128 -134 207 292 0 0 chrX 150363511 150363559 -12236371 - MIR SINE MIR -56 206 159 314 357 136 28 chrX 150363871 150364084 -12235846 - MIR SINE MIR -16 246 11 1084 231 48 66 chrX 150364208 150364650 -12235280 + LTR55 LTR ERV 113 546 -2 953 174 28 43 chrX 150364706 150364959 -12234971 - L1MB8 LINE L1 -5 6173 5925 374 354 0 0 chrX 150365243 150365342 -12234588 + L2 LINE L2 3158 3256 -16 280 243 146 10 chrX 150365413 150365516 -12234414 + MIR SINE MIR 102 218 -44 180 358 0 42 chrX 150365515 150365610 -12234320 - MIR SINE MIR -126 136 46 * 415 304 71 24 chrX 150367161 150367329 -12232601 + MIR SINE MIR 81 256 -6 742 278 22 18 chrX 150367667 150367890 -12232040 - MIR SINE MIR -2 260 37 1884 157 96 78 chrX 150368019 150368572 -12231358 + MER61A-int LTR ERV1 215 777 -4440 1133 88 44 10 chrX 150368565 150368812 -12231118 + MER61A-int LTR ERV1 1320 1621 -3596 * 355 44 0 0 chrX 150368827 150368872 -12231058 + MER61A-int LTR ERV1 5173 5217 0 1946 115 75 9 chrX 150368872 150369194 -12230736 + MER61A LTR ERV1 1 343 0 335 83 0 0 chrX 150369199 150369247 -12230683 + L1ME1 LINE L1 5709 5756 -422 501 244 4 83 chrX 150369265 150369494 -12230436 + L1ME1 LINE L1 5929 6139 -27 247 266 38 13 chrX 150369514 150369593 -12230337 + MIR SINE MIR 137 217 -45 620 165 57 43 chrX 150369840 150370036 -12229894 + MER6 DNA MER2_type -65 865 0 223 293 0 0 chrX 150370040 150370098 -12229832 + (TA)n Simple_repeat Simple_repeat 1 58 0 446 345 94 20 chrX 150370229 150370432 -12229498 - MIR SINE MIR -19 243 26 2255 84 0 14 chrX 150370810 150371119 -12228811 - AluSc SINE Alu 0 305 1 542 319 17 30 chrX 150371447 150371682 -12228248 + MIR SINE MIR 31 262 0 2072 124 3 10 chrX 150371954 150372298 -12227632 + AluSq SINE Alu 1 313 0 425 277 23 8 chrX 150372334 150372464 -12227466 - MIR SINE MIR -10 252 121 224 280 0 0 chrX 150372568 150372618 -12227312 + (TG)n Simple_repeat Simple_repeat 1 50 0 8188 55 9 0 chrX 150373380 150374337 -12225593 - LTR5 LTR ERVK -3 966 1 6255 93 23 0 chrX 150374623 150375877 -12224053 + L1PA11 LINE L1 4900 6173 -1 449 315 23 72 chrX 150376275 150376486 -12223444 + MLT1I LTR MaLR 63 252 -157 2353 91 7 0 chrX 150376486 150376793 -12223137 + AluSc SINE Alu 1 309 0 449 315 23 72 chrX 150376793 150376930 -12223000 + MLT1I LTR MaLR 252 394 -15 1920 97 18 3 chrX 150378135 150378527 -12221403 + LTR7 LTR ERV1 1 448 -2 267 333 0 35 chrX 150380486 150380630 -12219300 + L3 LINE CR1 1145 1283 -294 204 135 0 0 chrX 150380675 150380712 -12219218 + (TCCA)n Simple_repeat Simple_repeat 3 39 0 384 246 135 63 chrX 150381211 150381309 -12218621 - MIR SINE MIR 0 262 173 2338 99 0 3 chrX 150381309 150381621 -12218309 - AluSq SINE Alu -2 311 1 384 246 135 63 chrX 150381621 150381729 -12218201 - MIR SINE MIR -89 173 41 246 256 35 0 chrX 150381834 150381920 -12218010 + MER103 DNA DNA 1 89 -77 278 333 8 26 chrX 150382584 150382701 -12217229 + L2 LINE L2 2640 2754 -560 288 288 144 0 chrX 150382960 150383078 -12216852 + L2 LINE L2 3136 3270 -2 357 331 62 0 chrX 150384031 150384161 -12215769 + L2 LINE L2 3176 3313 0 841 269 17 13 chrX 150384208 150384446 -12215484 + MIR SINE MIR 9 247 -15 403 311 25 37 chrX 150385043 150385204 -12214726 + MIR SINE MIR 10 168 -94 257 374 41 14 chrX 150385271 150385418 -12214512 - L2 LINE L2 -3 3310 3160 2299 167 62 2 chrX 150385443 150385845 -12214085 + MSTB LTR MaLR 1 426 0 2374 70 0 0 chrX 150386280 150386596 -12213334 + AluY SINE Alu 1 316 0 2213 104 0 7 chrX 150386688 150386986 -12212944 - AluSq SINE Alu -17 296 1 2944 127 0 9 chrX 150388239 150388695 -12211235 + L1PA15 LINE L1 5710 6161 -4 5513 148 21 4 chrX 150388952 150389963 -12209967 + L1MA7 LINE L1 5254 6281 -10 605 310 87 12 chrX 150391013 150391255 -12208675 + MIR SINE MIR 3 262 0 2098 126 80 6 chrX 150391381 150391730 -12208200 + THE1C LTR MaLR 1 375 0 430 211 211 9 chrX 150392654 150392763 -12207167 + FLAM_C SINE Alu 1 131 -12 1360 193 100 15 chrX 150392769 150393038 -12206892 + AluJo SINE Alu 1 292 -20 251 327 10 40 chrX 150393407 150393508 -12206422 + MIR SINE MIR 28 125 -137 275 140 53 0 chrX 150394169 150394226 -12205704 - L1MA9 LINE L1 -373 5939 5880 1244 210 45 93 chrX 150395129 150395548 -12204382 + MLT1I LTR MaLR 3 401 -8 198 0 0 0 chrX 150395551 150395573 -12204357 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 2176 97 21 0 chrX 150395917 150396205 -12203725 + AluSq SINE Alu 1 294 -19 7936 199 77 16 chrX 150396326 150397988 -12201942 + L1M1 LINE L1 16 1778 -5787 5434 140 14 6 chrX 150397992 150398927 -12201003 + L1M1 LINE L1 2408 3349 -4216 698 137 24 8 chrX 150398939 150399063 -12200867 + L1M1 LINE L1 4929 5054 -2511 3070 188 44 11 chrX 150399066 150399902 -12200028 + L1M1 LINE L1 5287 6196 -1369 1339 118 84 17 chrX 150399902 150400139 -12199791 - THE1C LTR MaLR 0 375 123 9617 118 33 7 chrX 150400139 150401564 -12198366 - THE1C-int LTR MaLR -118 1462 1 1825 166 62 8 chrX 150401564 150401920 -12198010 - THE1C LTR MaLR 0 375 1 2127 203 66 4 chrX 150401920 150402448 -12197482 + L1M1 LINE L1 6192 6752 -813 6370 101 23 8 chrX 150402469 150403468 -12196462 + L1MA1 LINE L1 6704 7721 0 373 346 41 88 chrX 150404215 150404556 -12195374 - L2 LINE L2 -45 3227 2903 559 339 26 0 chrX 150404806 150405001 -12194929 + MIR SINE MIR 2 201 -61 652 258 100 29 chrX 150405003 150405243 -12194687 + MIR SINE MIR 6 262 0 198 267 50 33 chrX 150405341 150405401 -12194529 + MIR SINE MIR 90 150 -58 218 178 219 0 chrX 150405403 150405476 -12194454 - MER5C DNA MER1_type -3 321 233 301 223 134 27 chrX 150405502 150405614 -12194316 - MER5C DNA MER1_type -200 124 1 378 261 151 17 chrX 150406351 150406470 -12193460 + L2 LINE L2 3179 3313 0 331 234 26 0 chrX 150406457 150406534 -12193396 + MIR SINE MIR 184 262 0 * 1486 269 121 4 chrX 150406679 150407217 -12192713 - L1ME3 LINE L1 -4 6158 5558 391 283 56 11 chrX 150407223 150407403 -12192527 + L1MEc LINE L1 24 211 -6185 289 264 0 0 chrX 150407607 150407679 -12192251 - L1MC4 LINE L1 -15 8027 7956 * 2083 275 72 24 chrX 150407666 150408452 -12191478 - L1MC4 LINE L1 -301 7741 6918 1014 217 108 12 chrX 150408454 150408492 -12191438 - MLT2B1 LTR ERVL -3 411 378 240 35 0 0 chrX 150408492 150408521 -12191409 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 329 0 24 0 chrX 150408520 150408561 -12191369 + (GA)n Simple_repeat Simple_repeat 2 43 0 1014 217 108 12 chrX 150408521 150408865 -12191065 - MLT2B1 LTR ERVL -36 378 1 408 152 14 131 chrX 150408872 150409017 -12190913 - L1MC3 LINE L1 -924 6861 6734 1023 141 6 6 chrX 150409017 150409187 -12190743 - MER44D DNA MER2_type 0 609 440 392 164 250 10 chrX 150409182 150409286 -12190644 - MER44D DNA MER2_type -210 399 1 * 543 231 36 113 chrX 150409286 150409481 -12190449 - L1MD3 LINE L1 -1237 6758 6614 52 82 0 0 chrX 150409483 150409605 -12190325 + AT_rich Low_complexity Low_complexity 1 122 0 5289 168 30 23 chrX 150409605 150411083 -12188847 + L1MA6 LINE L1 4814 6300 0 385 351 27 16 chrX 150411181 150411366 -12188564 + MIR SINE MIR 60 246 -16 208 366 12 0 chrX 150411405 150411487 -12188443 - L2 LINE L2 -667 2647 2565 1156 269 46 15 chrX 150412237 150412714 -12187216 - L2 LINE L2 -188 3125 2633 2555 45 0 0 chrX 150412995 150413304 -12186626 - AluY SINE Alu -2 309 1 181 390 63 0 chrX 150414283 150414378 -12185552 + L2 LINE L2 3197 3297 -16 261 306 22 15 chrX 150414500 150414634 -12185296 + MER113 DNA MER1_type? 1 135 -386 2386 185 8 0 chrX 150414703 150415185 -12184745 - L1M2 LINE L1 -1616 4530 4045 3737 213 14 14 chrX 150415189 150416113 -12183817 + L1M2 LINE L1 4519 5443 -743 13444 146 57 8 chrX 150416118 150418419 -12181511 + Tigger1 DNA MER2_type 5 2417 -1 1791 181 6 3 chrX 150418419 150418739 -12181191 + L1M2 LINE L1 5442 5762 -538 316 252 110 146 chrX 150419093 150419537 -12180393 + HAL1b LINE L1 72 498 -850 4713 146 59 14 chrX 150419537 150420401 -12179529 + MER4D LTR ERV1 1 903 0 316 252 110 146 chrX 150420401 150420448 -12179482 + HAL1b LINE L1 498 545 -803 269 239 14 14 chrX 150420484 150420555 -12179375 - MER69 DNA AcHobo -7 2519 2449 2284 173 55 0 chrX 150421585 150421989 -12177941 - MSTB LTR MaLR 0 426 1 280 226 65 0 chrX 150422492 150422585 -12177345 - MER69 DNA AcHobo -81 2445 2347 2388 323 27 26 chrX 150422686 150423655 -12176275 + L2 LINE L2 1912 2881 -433 250 135 0 0 chrX 150423657 150423694 -12176236 - MLT2B1 LTR ERVL -481 39 3 21 82 0 0 chrX 150424127 150424176 -12175754 + AT_rich Low_complexity Low_complexity 1 49 0 307 324 201 5 chrX 150424354 150424558 -12175372 + MIR SINE MIR 11 254 -8 300 286 0 0 chrX 150424812 150424889 -12175041 - MLT1I LTR MaLR 0 409 333 180 97 0 0 chrX 150424889 150424920 -12175010 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1323 0 0 0 chrX 150424922 150425064 -12174866 - AluYa5 SINE Alu -26 285 144 529 248 27 47 chrX 150425211 150425360 -12174570 - MLT1I LTR MaLR -201 208 63 371 284 10 10 chrX 150426458 150426560 -12173370 - MIR SINE MIR -140 122 21 41 0 0 0 chrX 150426633 150426674 -12173256 + AT_rich Low_complexity Low_complexity 1 41 0 1790 162 35 35 chrX 150426674 150426870 -12173060 - L1MA7 LINE L1 -2 6289 6094 1845 186 50 31 chrX 150426870 150427294 -12172636 - MSTB1 LTR MaLR 0 432 1 1790 162 35 35 chrX 150427294 150427499 -12172431 - L1MA7 LINE L1 -196 6095 5888 853 191 0 0 chrX 150428537 150428699 -12171231 - L1MB1 LINE L1 0 6168 6007 308 305 110 99 chrX 150428813 150429105 -12170825 + HAL1 LINE L1 48 342 -2165 232 331 35 47 chrX 150429281 150429538 -12170392 + HAL1 LINE L1 701 954 -1553 180 0 0 0 chrX 150429682 150429702 -12170228 + (CAA)n Simple_repeat Simple_repeat 2 21 0 441 269 135 38 chrX 150429721 150430196 -12169734 + HAL1 LINE L1 1012 1532 -975 226 133 17 33 chrX 150430201 150430261 -12169669 + (TA)n Simple_repeat Simple_repeat 1 59 0 312 191 34 0 chrX 150430309 150430398 -12169532 + (TA)n Simple_repeat Simple_repeat 1 92 0 2219 165 21 39 chrX 150430773 150430927 -12169003 + MSTA LTR MaLR 1 156 -272 2173 84 70 0 chrX 150430927 150431214 -12168716 - AluSg SINE Alu -1 309 3 2219 165 21 39 chrX 150431214 150431495 -12168435 + MSTA LTR MaLR 156 428 0 8922 184 12 9 chrX 150431495 150433140 -12166790 + MSTA-int LTR MaLR 1 1649 -2 2113 172 54 10 chrX 150433148 150433556 -12166374 + MSTA LTR MaLR 1 426 -2 1916 329 24 16 chrX 150434084 150434752 -12165178 + L1MA8 LINE L1 1356 2028 -5468 12455 222 51 26 chrX 150434758 150435326 -12164604 + L1MA8 LINE L1 2398 2950 -4760 2814 16 0 3 chrX 150435326 150435640 -12164290 + AluYb8 SINE Alu 1 313 -5 12455 222 51 26 chrX 150435640 150436877 -12163053 + L1MA8 LINE L1 2950 4155 -3555 888 29 0 0 chrX 150436877 150436980 -12162950 + L1PA8 LINE L1 6055 6157 -15 12455 222 51 26 chrX 150436980 150437336 -12162594 + L1MA8 LINE L1 4155 4501 -3209 222 37 0 0 chrX 150437336 150437363 -12162567 + (GA)n Simple_repeat Simple_repeat 1 27 0 12455 222 51 26 chrX 150437363 150437695 -12162235 + L1MA8 LINE L1 4501 4823 -2887 2635 65 14 17 chrX 150437695 150438051 -12161879 + L1PA7 LINE L1 5800 6154 0 12455 222 51 26 chrX 150438051 150440323 -12159607 + L1MA8 LINE L1 4823 7313 -397 24 32 0 0 chrX 150440333 150440364 -12159566 + AT_rich Low_complexity Low_complexity 1 31 0 2301 84 37 0 chrX 150440771 150441069 -12158861 - AluSx SINE Alu -3 309 1 2137 103 3 0 chrX 150442641 150442959 -12156971 - AluSp SINE Alu 0 319 1 324 295 155 15 chrX 150443681 150443881 -12156049 - MARNA DNA Mariner -222 364 137 198 71 0 0 chrX 150444244 150444272 -12155658 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 676 242 87 32 chrX 150444911 150445163 -12154767 + MLT1L LTR MaLR 1 266 -349 282 178 0 110 chrX 150445192 150445265 -12154665 + MIR SINE MIR 172 236 -26 5660 119 14 2 chrX 150445890 150446915 -12153015 + L1PA14 LINE L1 5120 6152 -9 180 300 0 67 chrX 150447257 150447317 -12152613 + L3 LINE CR1 1480 1535 -42 678 237 20 20 chrX 150447539 150447737 -12152193 + MLT1J2 LTR MaLR 37 234 -216 2299 79 10 0 chrX 150448215 150448507 -12151423 + AluSx SINE Alu 1 295 -17 264 176 0 94 chrX 150448550 150448635 -12151295 - MADE1 DNA Mariner -3 77 1 711 195 0 0 chrX 150448863 150448986 -12150944 + FLAM_C SINE Alu 1 123 -20 1921 198 13 82 chrX 150449172 150449707 -12150223 + MLT1D LTR MaLR 8 505 0 214 291 126 16 chrX 150449717 150449844 -12150086 - L2 LINE L2 -12 3301 3161 331 317 48 28 chrX 150450375 150450520 -12149410 + MIR SINE MIR 79 226 -36 1853 233 108 23 chrX 150451838 150452405 -12147525 + MLT1E1 LTR MaLR 40 654 0 1045 168 41 0 chrX 150452614 150452810 -12147120 + MER3 DNA MER1_type 1 204 -5 684 263 112 0 chrX 150452814 150453019 -12146911 + MIR SINE MIR 30 257 -5 2374 104 0 0 chrX 150453386 150453695 -12146235 - AluSq SINE Alu -4 309 1 6026 109 12 0 chrX 150457002 150458423 -12141507 + L1PA13 LINE L1 4728 6161 -2 486 304 128 18 chrX 150458427 150458756 -12141174 - MLT1J LTR MaLR -96 415 51 290 278 196 0 chrX 150459118 150459251 -12140679 - L2 LINE L2 -1 3312 3154 2427 70 6 13 chrX 150459251 150459565 -12140365 + AluSq SINE Alu 1 312 -1 249 33 0 0 chrX 150460467 150460497 -12139433 + (CA)n Simple_repeat Simple_repeat 1 30 0 822 98 0 0 chrX 150461271 150461393 -12138537 + (GGA)n Simple_repeat Simple_repeat 3 124 0 570 271 51 47 chrX 150461507 150461743 -12138187 - MIR SINE MIR -23 239 3 544 239 112 15 chrX 150462727 150462861 -12137069 + MIR3 SINE MIR 13 159 -49 368 351 15 8 chrX 150462876 150463010 -12136920 - MER5A DNA MER1_type -22 167 33 2189 80 21 7 chrX 150463112 150463400 -12136530 + AluSc SINE Alu 1 292 -17 197 156 0 22 chrX 150463553 150463598 -12136332 + GA-rich Low_complexity Low_complexity 3 46 0 2079 105 49 65 chrX 150463882 150464252 -12135678 + THE1B LTR MaLR 1 364 0 258 245 71 10 chrX 150466403 150466501 -12133429 - MER112 DNA MER1_type -6 254 151 442 216 39 0 chrX 150466593 150466695 -12133235 + MER20 DNA MER1_type 114 219 0 310 258 34 11 chrX 150466894 150466983 -12132947 + MIR SINE MIR 93 183 -79 195 345 41 0 chrX 150467148 150467248 -12132682 - MIR SINE MIR -67 141 31 491 98 0 43 chrX 150467847 150467939 -12131991 + L1PA15 LINE L1 6075 6162 -3 523 79 64 14 chrX 150470233 150470373 -12129557 + CT-rich Low_complexity Low_complexity 2 148 0 368 297 91 62 chrX 150470760 150471080 -12128850 - L1M2 LINE L1 -5624 1225 897 266 261 199 37 chrX 150471887 150472048 -12127882 + MIR3 SINE MIR 4 190 -18 192 283 71 50 chrX 150472280 150472379 -12127551 - MIR3 SINE MIR -37 171 71 212 306 194 0 chrX 150472955 150473115 -12126815 - MIR3 SINE MIR -12 196 6 389 125 11 0 chrX 150473603 150473691 -12126239 + (CA)n Simple_repeat Simple_repeat 1 89 0 231 36 0 0 chrX 150477706 150477734 -12122196 + (T)n Simple_repeat Simple_repeat 1 28 0 212 175 0 0 chrX 150477796 150477836 -12122094 + T-rich Low_complexity Low_complexity 2 41 0 23 33 0 0 chrX 150478344 150478374 -12121556 + AT_rich Low_complexity Low_complexity 1 30 0 238 265 112 41 chrX 150481000 150481098 -12118832 - L2 LINE L2 0 3313 3209 188 135 0 58 chrX 150481356 150481408 -12118522 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 2401 90 6 3 chrX 150483480 150483792 -12116138 + AluSq SINE Alu 1 313 0 32 0 0 0 chrX 150483894 150483926 -12116004 + AT_rich Low_complexity Low_complexity 1 32 0 218 276 0 81 chrX 150484136 150484223 -12115707 + L2 LINE L2 3234 3313 0 297 0 0 0 chrX 150484378 150484411 -12115519 + (CA)n Simple_repeat Simple_repeat 2 34 0 312 301 105 20 chrX 150484852 150485005 -12114925 + MIR3 SINE MIR 37 202 -6 243 360 0 0 chrX 150486601 150486687 -12113243 + MIR SINE MIR 50 135 -73 27 81 0 0 chrX 150589673 150589735 -12010195 + AT_rich Low_complexity Low_complexity 1 62 0 242 111 0 0 chrX 150590577 150590622 -12009308 - LTR66 LTR ERVL -171 439 395 * 246 121 0 69 chrX 150590589 150590647 -12009283 + LTR66 LTR ERVL 398 451 -159 21 0 0 0 chrX 150591594 150591615 -12008315 + AT_rich Low_complexity Low_complexity 1 21 0 3653 256 46 24 chrX 150592003 150593401 -12006529 + L1MC/D LINE L1 2701 4129 -2017 309 109 0 0 chrX 150593401 150593456 -12006474 + (TA)n Simple_repeat Simple_repeat 1 55 0 192 40 0 0 chrX 150593455 150593480 -12006450 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 10612 128 13 13 chrX 150593883 150595533 -12004397 - Tigger2 DNA MER2_type -470 2248 600 357 261 39 46 chrX 150595534 150595687 -12004243 - L1MA9 LINE L1 -200 6112 5961 225 0 0 0 chrX 150595796 150595821 -12004109 + (GA)n Simple_repeat Simple_repeat 2 26 0 2635 228 36 19 chrX 150595826 150595883 -12004047 + L1MC/D LINE L1 4639 4694 -1665 768 203 0 0 chrX 150595883 150596016 -12003914 + FLAM_C SINE Alu 1 133 0 2635 228 36 19 chrX 150596016 150597117 -12002813 + L1MC/D LINE L1 4694 5822 -537 591 198 8 0 chrX 150597126 150597252 -12002678 + L1 LINE L1 4969 5095 -1051 8450 148 11 24 chrX 150597269 150598523 -12001407 + LTR57-int LTR ERVL 564 1796 -3547 1840 153 143 11 chrX 150598523 150598901 -12001029 + MSTA LTR MaLR 1 428 0 8450 148 11 24 chrX 150598901 150599146 -12000784 + LTR57-int LTR ERVL 1796 2043 -3300 194 280 32 54 chrX 150600056 150600149 -11999781 - MIR SINE MIR -44 218 128 26 50 0 0 chrX 150600456 150600496 -11999434 + AT_rich Low_complexity Low_complexity 1 40 0 2122 174 15 20 chrX 150600969 150601372 -11998558 + MLT2C2 LTR ERVL 3 403 -61 216 67 0 0 chrX 150601415 150601445 -11998485 + (TG)n Simple_repeat Simple_repeat 1 30 0 1799 152 58 22 chrX 150601939 150602301 -11997629 + THE1C LTR MaLR 1 375 0 21 36 0 0 chrX 150602373 150602401 -11997529 + AT_rich Low_complexity Low_complexity 1 28 0 1698 178 11 4 chrX 150603069 150603350 -11996580 + AluJb SINE Alu 3 285 -27 309 273 13 84 chrX 150603517 150603671 -11996259 - MIR SINE MIR -4 258 116 304 266 152 67 chrX 150604252 150604549 -11995381 + L1ME LINE L1 4309 4630 -1516 587 201 69 0 chrX 150604879 150605038 -11994892 + L1M4 LINE L1 3832 4001 -2145 587 245 122 5 chrX 150606241 150606405 -11993525 + MER5A DNA MER1_type 4 189 0 286 259 52 43 chrX 150606408 150606524 -11993406 + L1MEd LINE L1 31 147 -5972 2014 158 119 10 chrX 150606819 150607205 -11992725 + MSTA LTR MaLR 1 428 0 564 281 12 40 chrX 150607219 150607561 -11992369 + L1ME LINE L1 5373 5703 -467 212 86 29 0 chrX 150607571 150607606 -11992324 + (TTA)n Simple_repeat Simple_repeat 2 37 0 25 51 0 0 chrX 150607698 150607737 -11992193 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chrX 150607756 150607779 -11992151 + AT_rich Low_complexity Low_complexity 1 23 0 43 35 0 0 chrX 150608409 150608466 -11991464 + AT_rich Low_complexity Low_complexity 1 57 0 354 298 82 50 chrX 150608559 150608838 -11991092 + HAL1 LINE L1 94 381 -2126 788 256 74 43 chrX 150608865 150609216 -11990714 + HAL1 LINE L1 1838 2199 -308 231 36 0 0 chrX 150609313 150609341 -11990589 + (TG)n Simple_repeat Simple_repeat 1 28 0 284 120 20 0 chrX 150609341 150609391 -11990539 + GA-rich Low_complexity Low_complexity 2 52 0 404 286 75 45 chrX 150609395 150609661 -11990269 + HAL1 LINE L1 2225 2498 -9 1051 180 21 11 chrX 150609977 150610166 -11989764 - AluJo SINE Alu -26 286 96 6582 41 1 1 chrX 150610168 150610967 -11988963 - L1PA5 LINE L1 -2 6152 5354 639 209 0 0 chrX 150610967 150611077 -11988853 - AluJo SINE Alu -202 110 1 2503 42 10 3 chrX 150612388 150612696 -11987234 + AluYa5 SINE Alu 1 310 -1 2521 151 41 0 chrX 150612873 150613264 -11986666 + LTR57-int LTR ERVL 2926 3332 -2011 * 10816 174 30 11 chrX 150613247 150613844 -11986086 + LTR57-int LTR ERVL 3455 4039 -1304 201 74 0 0 chrX 150613844 150613871 -11986059 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 10816 174 30 11 chrX 150613871 150615126 -11984804 + LTR57-int LTR ERVL 4039 5343 0 2125 172 25 17 chrX 150615126 150615532 -11984398 + LTR57 LTR ERVL 1 409 -2 1951 169 90 0 chrX 150615698 150615770 -11984160 + L1MA8 LINE L1 5694 5758 -533 324 0 0 0 chrX 150615770 150615806 -11984124 + (CA)n Simple_repeat Simple_repeat 1 36 0 1951 169 90 0 chrX 150615806 150616135 -11983795 + L1MA8 LINE L1 5758 6131 -160 * 13897 187 42 11 chrX 150616127 150618760 -11981170 + L1M1 LINE L1 12 2726 -4839 308 203 0 0 chrX 150618773 150618837 -11981093 + L1MA8 LINE L1 6186 6249 -42 1032 223 33 4 chrX 150618840 150619082 -11980848 + L1MD2 LINE L1 5895 6143 -216 21 36 0 0 chrX 150619083 150619111 -11980819 + AT_rich Low_complexity Low_complexity 1 28 0 584 186 0 0 chrX 150619431 150619528 -11980402 + AluS SINE Alu 3 99 -213 2225 114 54 20 chrX 150619532 150619884 -11980046 + THE1B LTR MaLR 1 364 0 1286 91 16 0 chrX 150619884 150620071 -11979859 + THE1B-int LTR MaLR 1 190 -1390 1939 77 12 23 chrX 150620347 150620606 -11979324 - AluY SINE Alu -14 297 42 5296 148 48 7 chrX 150620900 150621855 -11978075 - L1MA4 LINE L1 0 6300 5307 2036 200 46 8 chrX 150621905 150622386 -11977544 + L1 LINE L1 4740 5238 -908 23 78 0 0 chrX 150623474 150623525 -11976405 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chrX 150624149 150624171 -11975759 + AT_rich Low_complexity Low_complexity 1 22 0 2351 66 0 17 chrX 150624362 150624663 -11975267 + AluY SINE Alu 3 298 -13 287 150 17 0 chrX 150624959 150625019 -11974911 + (TA)n Simple_repeat Simple_repeat 1 61 0 1015 194 44 10 chrX 150625566 150625939 -11973991 + L1MCa LINE L1 1477 1948 -4478 768 143 121 6 chrX 150626085 150626267 -11973663 - L1MA9 LINE L1 0 6312 6110 2114 144 71 5 chrX 150626271 150626638 -11973292 - Tigger2 DNA MER2_type -4 2714 2324 324 129 16 16 chrX 150626740 150626802 -11973128 - L1MA9 LINE L1 -431 5860 5799 1129 188 5 5 chrX 150626802 150627010 -11972920 + MER2 DNA MER2_type 2 209 -136 261 0 0 0 chrX 150627107 150627136 -11972794 + (TG)n Simple_repeat Simple_repeat 2 30 0 774 152 0 70 chrX 150627150 150627308 -11972622 - L1MA9 LINE L1 -512 5788 5642 1935 188 53 36 chrX 150627310 150627855 -11972075 + MLT2A2 LTR ERVL 1 554 0 8704 102 1 40 chrX 150627855 150628243 -11971687 + HERVL-A2 LTR ERVL 1 403 -5251 262 128 0 0 chrX 150628243 150628290 -11971640 + MER2 DNA MER2_type 132 178 -167 8704 102 1 40 chrX 150628290 150629166 -11970764 + HERVL-A2 LTR ERVL 403 1259 -4395 12025 219 39 35 chrX 150629174 150629621 -11970309 - L1P LINE L1 -1393 4753 4309 2343 127 25 0 chrX 150629621 150629976 -11969954 + THE1B LTR MaLR 1 364 0 12025 219 39 35 chrX 150629976 150632788 -11967142 - L1P LINE L1 -1837 4309 1482 1932 176 49 5 chrX 150632788 150633236 -11966694 - L1MA9 LINE L1 -1585 4561 4094 2451 193 58 93 chrX 150633253 150633996 -11965934 - MER50 LTR ERV1 -16 718 2 568 185 21 0 chrX 150633998 150634225 -11965705 - L1MA9 LINE L1 -2050 4096 3835 795 196 39 9 chrX 150634225 150634565 -11965365 - MSTB2 LTR MaLR 0 432 3 832 65 0 0 chrX 150635014 150635121 -11964809 - L1PA7 LINE L1 -2 6152 6046 181 329 13 0 chrX 150636387 150636463 -11963467 - MIR SINE MIR -19 243 167 2496 64 3 6 chrX 150636917 150637229 -11962701 - AluY SINE Alu 0 311 1 1579 195 42 28 chrX 150637509 150637863 -11962067 + MLT1A1 LTR MaLR 1 359 -6 3661 259 42 15 chrX 150638255 150638418 -11961512 + L1M4 LINE L1 3739 3896 -2250 237 33 0 0 chrX 150638418 150638448 -11961482 + (CA)n Simple_repeat Simple_repeat 2 31 0 3661 259 42 15 chrX 150638448 150639602 -11960328 + L1M4 LINE L1 3896 5092 -1054 6806 148 21 3 chrX 150639621 150641885 -11958045 - L1MA2 LINE L1 -2 6302 4003 2360 151 27 11 chrX 150641885 150642324 -11957606 + L1MA1 LINE L1 5846 6301 -1 3713 210 66 10 chrX 150642325 150644014 -11955916 + L1MA10 LINE L1 4540 6333 -1 229 259 17 0 chrX 150644214 150644272 -11955658 + GA-rich Low_complexity Low_complexity 2 60 0 26 0 0 0 chrX 150645335 150645361 -11954569 + AT_rich Low_complexity Low_complexity 1 26 0 26 88 0 0 chrX 150645624 150645692 -11954238 + AT_rich Low_complexity Low_complexity 1 68 0 416 202 45 0 chrX 150645969 150646058 -11953872 - L1ME3A LINE L1 -1 6169 6077 393 198 0 0 chrX 150647552 150647633 -11952297 + (TA)n Simple_repeat Simple_repeat 2 82 0 2084 124 26 7 chrX 150647941 150648247 -11951683 + AluSx SINE Alu 1 312 0 3085 93 20 14 chrX 150648328 150648769 -11951161 + MLT2A1 LTR ERVL 1 444 0 1623 174 139 13 chrX 150649071 150649451 -11950479 - MSTA LTR MaLR 0 428 1 8344 198 45 18 chrX 150649966 150651662 -11948268 + L1M1 LINE L1 20 1771 -5794 423 0 0 0 chrX 150651662 150651709 -11948221 + (GA)n Simple_repeat Simple_repeat 2 48 0 8344 198 45 18 chrX 150651709 150651852 -11948078 + L1M1 LINE L1 1771 1909 -5656 11138 206 36 2 chrX 150651865 150655078 -11944852 + L1M1 LINE L1 3865 7168 -555 2022 133 57 25 chrX 150655078 150655431 -11944499 + THE1B LTR MaLR 1 364 0 8428 108 21 29 chrX 150655431 150656769 -11943161 + THE1B-int LTR MaLR 1 1327 -253 325 205 103 0 chrX 150656777 150656855 -11943075 + LTR10A LTR ERV1 13 98 -511 1365 148 86 34 chrX 150656877 150657168 -11942762 + LTR10A LTR ERV1 243 548 -61 781 252 64 10 chrX 150657173 150657471 -11942459 + Harlequin LTR ERV1 1 314 -6335 263 164 0 33 chrX 150657508 150657569 -11942361 + Harlequin LTR ERV1 283 341 -7444 2353 102 27 16 chrX 150657878 150658305 -11941625 + Harlequin LTR ERV1 713 1113 -5860 * 10555 104 41 42 chrX 150658300 150659380 -11940550 + Harlequin LTR ERV1 1219 2298 -4351 2453 54 0 3 chrX 150659380 150659674 -11940256 + AluY SINE Alu 1 293 -18 10555 104 41 42 chrX 150659674 150660970 -11938960 + Harlequin LTR ERV1 2298 5322 -1327 7668 11 0 0 chrX 150660970 150662255 -11937675 + L1HS LINE L1 4871 6155 0 5708 142 6 11 chrX 150662270 150663593 -11936337 + Harlequin LTR ERV1 3383 6645 -4 1571 157 121 26 chrX 150663606 150664038 -11935892 + LTR10A LTR ERV1 13 548 -61 1807 101 0 0 chrX 150664051 150664309 -11935621 + THE1B-int LTR MaLR 1323 1580 0 1604 103 64 83 chrX 150664309 150664621 -11935309 + THE1B LTR MaLR 1 306 -58 2612 158 37 11 chrX 150664690 150665235 -11934695 + L1MA2 LINE L1 5746 6304 0 1996 258 62 21 chrX 150665259 150666571 -11933359 + L1M4 LINE L1 1035 2388 -4571 4579 128 33 14 chrX 150666616 150667381 -11932549 + MER4E LTR ERV1 1 779 0 2055 127 0 0 chrX 150667417 150667725 -11932205 + AluSg SINE Alu 1 308 0 2132 118 6 26 chrX 150667735 150668048 -11931882 + AluSx SINE Alu 1 307 -5 321 284 27 104 chrX 150668191 150668413 -11931517 + L1M4 LINE L1 2508 2712 -4426 1779 244 70 25 chrX 150668434 150668964 -11930966 + L1M4 LINE L1 4631 5212 -1745 2134 102 0 0 chrX 150668964 150669291 -11930639 + AluY SINE Alu 1 327 0 1779 244 70 25 chrX 150669291 150669565 -11930365 + L1M4 LINE L1 5212 5472 -1485 * 2324 213 45 14 chrX 150669560 150670199 -11929731 + L1MA9 LINE L1 5616 6274 -38 926 271 47 40 chrX 150670223 150670776 -11929154 + L1M4 LINE L1 5455 6011 -946 2130 113 7 0 chrX 150670999 150671292 -11928638 + AluY SINE Alu 1 295 -16 2080 141 118 28 chrX 150671869 150672267 -11927663 - Tigger2a DNA MER2_type 0 434 1 23 33 0 0 chrX 150672270 150672300 -11927630 + AT_rich Low_complexity Low_complexity 1 30 0 2076 112 10 10 chrX 150672410 150672705 -11927225 - AluSx SINE Alu -17 295 1 22 0 0 0 chrX 150672935 150672957 -11926973 + AT_rich Low_complexity Low_complexity 1 22 0 1644 193 73 6 chrX 150674553 150674895 -11925035 + MLT1A1 LTR MaLR 1 365 0 297 241 0 25 chrX 150675273 150675352 -11924578 + GA-rich Low_complexity Low_complexity 2 78 0 1805 203 8 3 chrX 150675354 150675714 -11924216 - MLT2D LTR ERVL -52 362 1 27 29 0 0 chrX 150675850 150675884 -11924046 + AT_rich Low_complexity Low_complexity 1 34 0 2680 91 11 16 chrX 150677746 150678121 -11921809 - THE1C LTR MaLR -2 373 1 367 137 27 0 chrX 150679183 150679256 -11920674 + (TA)n Simple_repeat Simple_repeat 2 76 0 1941 116 17 10 chrX 150679256 150679550 -11920380 - AluY SINE Alu -15 296 1 351 273 10 0 chrX 150681199 150681298 -11918632 + MER3 DNA MER1_type 5 104 -105 4801 152 40 42 chrX 150681345 150682722 -11917208 - pTR5 LTR ERV1 0 2438 734 1764 189 39 0 chrX 150683351 150683684 -11916246 - MER7A DNA MER2_type -1 345 2 4943 65 5 10 chrX 150685729 150686343 -11913587 + SVA Other Other 776 1386 0 255 218 18 0 chrX 150686406 150686461 -11913469 - MIR SINE MIR -96 166 111 293 359 60 14 chrX 150687213 150687430 -11912500 - MIR SINE MIR -9 253 27 846 299 115 85 chrX 150687812 150688159 -11911771 + L3 LINE CR1 738 1073 -504 2089 114 0 33 chrX 150688159 150688465 -11911465 - AluSc SINE Alu -9 300 5 2427 72 3 0 chrX 150688468 150688760 -11911170 - AluSp SINE Alu -20 293 1 846 299 115 85 chrX 150688760 150689103 -11910827 + L3 LINE CR1 1074 1453 -124 1765 140 14 0 chrX 150689112 150689391 -11910539 + MER1A DNA MER1_type 1 283 -246 329 179 0 26 chrX 150689616 150689694 -11910236 + MER1A DNA MER1_type 291 366 -163 1690 133 7 4 chrX 150689976 150690247 -11909683 - AluSp SINE Alu -41 272 1 682 290 149 42 chrX 150690256 150690591 -11909339 + L3 LINE CR1 1083 1453 -124 1654 134 22 7 chrX 150690602 150690878 -11909052 + MER1A DNA MER1_type 4 283 -246 270 136 0 0 chrX 150691043 150691087 -11908843 - Charlie3 DNA MER1_type -4 2706 2663 1248 149 48 0 chrX 150691102 150691330 -11908600 + Charlie3 DNA MER1_type 2468 2706 -4 474 296 79 16 chrX 150692420 150692609 -11907321 - MIR SINE MIR -16 246 46 228 67 0 0 chrX 150692936 150692966 -11906964 + (CAG)n Simple_repeat Simple_repeat 3 32 0 204 286 63 0 chrX 150693407 150693470 -11906460 - MIR3 SINE MIR -32 176 110 1208 207 107 13 chrX 150694739 150695048 -11904882 + MER2 DNA MER2_type 7 344 -1 251 323 81 101 chrX 150696250 150696808 -11903122 - L2 LINE L2 -26 3246 2682 237 279 126 9 chrX 150697739 150697850 -11902080 - MIR SINE MIR -51 211 88 839 304 77 54 chrX 150698047 150698551 -11901379 - MLT1K LTR MaLR 0 588 73 692 241 10 40 chrX 150698666 150698865 -11901065 - MIR SINE MIR 0 262 70 822 234 153 19 chrX 150699071 150699378 -11900552 - MLT1L LTR MaLR -24 591 244 270 120 20 40 chrX 150699385 150699435 -11900495 + MLT1A1 LTR MaLR 1 49 -347 2405 90 0 0 chrX 150699439 150699781 -11900149 + AluY SINE Alu 1 342 0 1140 199 22 121 chrX 150699781 150700137 -11899793 + MLT1A1 LTR MaLR 45 365 0 382 216 173 93 chrX 150700230 150700392 -11899538 - MER96 DNA MER1_type 0 175 1 183 235 0 0 chrX 150700592 150700626 -11899304 + MIR3 SINE MIR 154 187 -21 1374 295 26 35 chrX 150700856 150701310 -11898620 + LTR16A LTR ERVL 1 450 0 1712 154 9 53 chrX 150702135 150702454 -11897476 + AluJo SINE Alu 4 308 -4 1863 211 89 70 chrX 150702551 150703090 -11896840 + MLT2B3 LTR ERVL 6 554 0 229 151 38 19 chrX 150704276 150704329 -11895601 - MLT1I LTR MaLR -40 502 449 316 282 46 81 chrX 150704394 150704568 -11895362 - MLT1I LTR MaLR -144 265 98 1131 274 14 67 chrX 150705271 150705632 -11894298 - MLT1I LTR MaLR -5 404 63 406 246 59 42 chrX 150707111 150707148 -11892782 - MLT1I LTR MaLR -1 408 373 2120 180 31 6 chrX 150707148 150707504 -11892426 + MLT1A1 LTR MaLR 1 365 0 406 246 59 42 chrX 150707504 150707584 -11892346 - MLT1I LTR MaLR -36 373 289 309 311 149 27 chrX 150707582 150707730 -11892200 - MLT1I LTR MaLR -162 247 82 * 21 36 0 0 chrX 150708492 150708520 -11891410 + AT_rich Low_complexity Low_complexity 1 28 0 394 361 77 13 chrX 150708935 150709234 -11890696 - LTR16C LTR ERVL -3 488 171 787 159 55 22 chrX 150709265 150709447 -11890483 + MER53 DNA DNA 2 189 0 333 297 72 9 chrX 150709819 150709930 -11890000 + L2 LINE L2 3149 3266 -6 183 311 89 0 chrX 150710278 150710368 -11889562 + MIR SINE MIR 114 211 -51 1600 235 79 58 chrX 150710446 150710527 -11889403 + MLT1E2 LTR MaLR 1 79 -547 1731 201 91 25 chrX 150710527 150710965 -11888965 + MLT1C LTR MaLR 1 467 0 1600 235 79 58 chrX 150710965 150711440 -11888490 + MLT1E2 LTR MaLR 79 569 -57 1094 64 58 6 chrX 150711441 150711597 -11888333 - L1MB3 LINE L1 -1 6182 6019 1915 126 23 80 chrX 150711597 150711649 -11888281 - THE1C LTR MaLR 0 375 322 2804 84 28 11 chrX 150711649 150712007 -11887923 - THE1B LTR MaLR 0 364 1 1915 126 23 80 chrX 150712007 150712352 -11887578 - THE1C LTR MaLR -53 322 1 773 172 86 0 chrX 150712352 150712527 -11887403 - L1MB3 LINE L1 -160 6023 5830 528 277 67 39 chrX 150712947 150713232 -11886698 + LTR16C LTR ERVL 197 489 -2 243 284 98 0 chrX 150713240 150713342 -11886588 - HAL1b LINE L1 -7 1341 1230 2266 76 4 0 chrX 150713668 150713970 -11885960 + AluSp SINE Alu 5 307 0 306 0 0 0 chrX 150714913 150714947 -11884983 + (TG)n Simple_repeat Simple_repeat 2 35 0 1947 119 3 52 chrX 150714966 150715276 -11884654 + AluSq SINE Alu 1 295 -18 264 325 13 25 chrX 150715961 150716118 -11883812 + GA-rich Low_complexity Low_complexity 1 155 0 4746 195 38 5 chrX 150716142 150717143 -11882787 + L1MB3 LINE L1 5151 6181 -2 237 196 0 0 chrX 150718055 150718106 -11881824 + L1MC4 LINE L1 6653 6703 -1339 630 208 16 55 chrX 150719657 150719840 -11880090 + MER5B DNA MER1_type 1 176 -2 225 0 0 0 chrX 150719981 150720006 -11879924 + (T)n Simple_repeat Simple_repeat 1 25 0 1623 160 125 18 chrX 150720448 150720785 -11879145 - THE1C LTR MaLR -1 374 2 339 293 19 9 chrX 150721237 150721343 -11878587 - L2 LINE L2 -652 2662 2556 381 139 13 25 chrX 150721531 150721610 -11878320 - MER53 DNA DNA -3 186 109 2310 60 3 3 chrX 150722354 150722685 -11877245 + AluY SINE Alu 1 331 0 935 215 9 40 chrX 150723247 150723470 -11876460 - MER58A DNA MER1_type 0 224 9 330 216 0 0 chrX 150724449 150724523 -11875407 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 215 262 146 10 chrX 150724697 150724800 -11875130 + MIR SINE MIR 33 149 -113 242 371 72 0 chrX 150724881 150724978 -11874952 - L2 LINE L2 -21 3251 3148 482 249 64 40 chrX 150725004 150725195 -11874735 + MER34 LTR ERV1 1 242 -402 500 242 37 50 chrX 150725202 150725363 -11874567 + LTR48 LTR ERV1 323 481 -306 389 221 68 36 chrX 150725394 150725573 -11874357 + MER34 LTR ERV1 433 542 0 8303 163 113 172 chrX 150725730 150726411 -11873519 - Tigger1 DNA MER2_type -3 2415 1695 2309 117 0 0 chrX 150726411 150726720 -11873210 - AluSg SINE Alu -1 309 1 8303 163 113 172 chrX 150726720 150726940 -11872990 - Tigger1 DNA MER2_type -723 1695 1463 9582 175 29 6 chrX 150726940 150728388 -11871542 + MSTA-int LTR MaLR 2 1492 -159 378 0 0 0 chrX 150728388 150728430 -11871500 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 9582 175 29 6 chrX 150728430 150728594 -11871336 + MSTA-int LTR MaLR 1492 1651 0 2395 140 83 10 chrX 150728594 150728993 -11870937 + MSTA LTR MaLR 1 428 0 8303 163 113 172 chrX 150728993 150730005 -11869925 - Tigger1 DNA MER2_type -954 1464 393 1882 207 92 5 chrX 150730005 150730396 -11869534 - MSTA LTR MaLR 0 428 4 9352 183 20 14 chrX 150730399 150732040 -11867890 - MSTA-int LTR MaLR 0 1651 1 2063 191 81 2 chrX 150732040 150732437 -11867493 - MSTA LTR MaLR 0 428 1 8303 163 113 172 chrX 150732437 150732601 -11867329 - Tigger1 DNA MER2_type -2026 392 220 4128 144 19 49 chrX 150732601 150733339 -11866591 + L1PA15 LINE L1 5450 6165 0 8303 163 113 172 chrX 150733339 150733597 -11866333 - Tigger1 DNA MER2_type -2198 220 235 2089 120 7 3 chrX 150733597 150733898 -11866032 + AluSx SINE Alu 1 302 -10 8303 163 113 172 chrX 150733898 150734121 -11865809 - Tigger1 DNA MER2_type -2182 236 1 220 349 39 8 chrX 150734159 150734288 -11865642 - L2 LINE L2 -314 2958 2826 1580 172 18 7 chrX 150735646 150735919 -11864011 - AluJo SINE Alu -17 295 20 238 139 0 0 chrX 150735920 150735956 -11863974 - Alu SINE Alu -132 171 136 2176 120 0 3 chrX 150735984 150736283 -11863647 + AluSx SINE Alu 1 298 -14 2278 96 0 0 chrX 150737174 150737475 -11862455 - AluSq SINE Alu -12 301 1 523 277 65 75 chrX 150737489 150737718 -11862212 + L1M4 LINE L1 2174 2404 -3742 2086 133 0 3 chrX 150737718 150738019 -11861911 - AluSx SINE Alu -12 300 1 523 277 65 75 chrX 150738019 150738453 -11861477 + L1M4 LINE L1 2404 2830 -3316 283 211 211 18 chrX 150738528 150738642 -11861288 - L2 LINE L2 -28 3285 3150 425 212 97 71 chrX 150738738 150738873 -11861057 + L1MC4 LINE L1 7810 7955 -87 1817 144 26 33 chrX 150738873 150739179 -11860751 + AluJb SINE Alu 1 304 -8 425 212 97 71 chrX 150739179 150739269 -11860661 + L1MC4 LINE L1 7955 8041 -1 2143 115 3 0 chrX 150739384 150739709 -11860221 - AluSx SINE Alu 0 312 1 335 244 59 34 chrX 150740445 150740564 -11859366 + MLT1J2 LTR MaLR 35 156 -294 242 337 76 0 chrX 150740710 150740802 -11859128 + MLT1J2 LTR MaLR 198 296 -154 1090 333 57 33 chrX 150741056 150741703 -11858227 - L2 LINE L2 -7 3306 2676 2143 144 36 28 chrX 150741703 150742064 -11857866 - THE1B LTR MaLR 0 364 1 11757 116 7 2 chrX 150742064 150743637 -11856293 - THE1B-int LTR MaLR 0 1580 1 2150 139 44 33 chrX 150743637 150743997 -11855933 - THE1B LTR MaLR 0 364 1 1090 333 57 33 chrX 150743997 150744257 -11855673 - L2 LINE L2 -636 2677 2380 192 158 0 0 chrX 150744384 150744422 -11855508 + (TG)n Simple_repeat Simple_repeat 1 38 0 338 247 0 12 chrX 150744547 150744628 -11855302 + MLT1E1 LTR MaLR 73 152 -502 251 216 68 57 chrX 150745098 150745186 -11854744 - L3 LINE CR1 -897 680 592 5814 147 32 31 chrX 150745418 150746375 -11853555 - L1MA4A LINE L1 -4 7361 6406 1309 203 38 38 chrX 150746375 150746666 -11853264 - AluJb SINE Alu -21 291 1 5814 147 32 31 chrX 150746666 150746928 -11853002 - L1MA4A LINE L1 -959 6406 6146 2432 72 0 10 chrX 150746928 150747234 -11852696 - AluY SINE Alu -8 303 1 5814 147 32 31 chrX 150747234 150747791 -11852139 - L1MA4A LINE L1 -1219 6146 5569 22 35 0 0 chrX 150748106 150748135 -11851795 + AT_rich Low_complexity Low_complexity 1 29 0 7932 11 0 0 chrX 150748213 150749171 -11850759 - L1PA2 LINE L1 0 6155 5198 4320 26 0 0 chrX 150749171 150749706 -11850224 + L1PA2 LINE L1 4668 5202 -944 3858 202 45 8 chrX 150749698 150750647 -11849283 - L1MA4A LINE L1 -1622 5586 4603 * 3185 239 57 23 chrX 150750672 150751705 -11848225 - L1MA4A LINE L1 -5830 1379 1 4633 241 57 22 chrX 150751709 150752325 -11847605 - L1M4 LINE L1 -984 5162 4569 3076 186 9 2 chrX 150752325 150752878 -11847052 + MER41D LTR ERV1 1 557 0 4633 241 57 22 chrX 150752878 150752997 -11846933 - L1M4 LINE L1 -1577 4569 4456 778 273 0 0 chrX 150752997 150753162 -11846768 - FAM SINE Alu -10 165 1 4633 241 57 22 chrX 150753162 150754047 -11845883 - L1M4 LINE L1 -1690 4456 3483 4930 186 23 9 chrX 150754048 150755598 -11844332 + L1PA13 LINE L1 4147 5719 -442 461 171 0 0 chrX 150755670 150755752 -11844178 + L1PA13 LINE L1 5701 5782 -379 35975 87 4 10 chrX 150755762 150760628 -11839302 + L1PA6 LINE L1 11 4835 -1319 2372 47 0 23 chrX 150760628 150760929 -11839001 - AluY SINE Alu -17 294 1 35975 87 4 10 chrX 150760929 150762242 -11837688 + L1PA6 LINE L1 4835 6154 0 1264 122 19 5 chrX 150762234 150762447 -11837483 + L1PA13 LINE L1 5769 5984 -179 * 302 222 0 81 chrX 150762457 150762556 -11837374 + L1MC4 LINE L1 6613 6703 -1339 327 192 0 0 chrX 150762561 150762639 -11837291 + (TA)n Simple_repeat Simple_repeat 1 78 0 6660 152 107 36 chrX 150762639 150763957 -11835973 - L1MCa LINE L1 -3921 2505 1032 2019 187 59 10 chrX 150763957 150764363 -11835567 - MSTB LTR MaLR 0 426 1 6660 152 107 36 chrX 150764363 150764766 -11835164 - L1MCa LINE L1 -5394 1032 659 422 264 69 19 chrX 150764870 150765071 -11834859 - MER8 DNA MER2_type 0 345 2 292 244 119 12 chrX 150765606 150765774 -11834156 - HAL1 LINE L1 -12 2495 2310 452 120 76 0 chrX 150765953 150766045 -11833885 - L1PB1 LINE L1 0 6151 6053 2770 183 61 5 chrX 150766142 150766699 -11833231 - L1MCa LINE L1 -5816 610 23 367 284 30 30 chrX 150766809 150766943 -11832987 - MIR SINE MIR -122 140 7 2312 215 97 3 chrX 150767132 150767722 -11832208 + MLT1E1 LTR MaLR 10 654 0 1126 204 125 74 chrX 150767766 150768054 -11831876 - MSTD LTR MaLR 0 396 83 798 215 0 51 chrX 150768054 150768212 -11831718 + FRAM SINE Alu 1 150 -16 1126 204 125 74 chrX 150768212 150768300 -11831630 - MSTD LTR MaLR -313 83 1 184 394 31 8 chrX 150768341 150768468 -11831462 - L2 LINE L2 -228 3044 2915 2157 127 0 3 chrX 150769083 150769383 -11830547 + AluSx SINE Alu 1 299 -13 3402 190 132 47 chrX 150769397 150770706 -11829224 - L1MB7 LINE L1 -17 6167 4727 918 246 0 0 chrX 150770706 150770881 -11829049 - FAM SINE Alu 0 175 1 3402 190 132 47 chrX 150770881 150770992 -11828938 - L1MB7 LINE L1 -1457 4727 4627 405 231 28 46 chrX 150771234 150771260 -11828670 - MER5A DNA MER1_type -80 109 84 1863 151 38 24 chrX 150771260 150771630 -11828300 - THE1C LTR MaLR 0 375 1 405 231 28 46 chrX 150771630 150771711 -11828219 - MER5A DNA MER1_type -105 84 4 185 94 31 0 chrX 150771795 150771827 -11828103 + A-rich Low_complexity Low_complexity 4 36 0 250 306 0 14 chrX 150771835 150771907 -11828023 - MIR SINE MIR -94 114 44 531 83 0 0 chrX 150772261 150772333 -11827597 + MSTB1 LTR MaLR 4 75 -357 2227 148 32 19 chrX 150772443 150772854 -11827076 - MSTB1 LTR MaLR -16 416 1 543 223 171 32 chrX 150772907 150773381 -11826549 + MLT1E3 LTR MaLR 1 619 -5 438 224 49 49 chrX 150773602 150773785 -11826145 - L1ME4a LINE L1 0 6121 5939 2594 195 54 6 chrX 150773984 150774518 -11825412 - MER68 LTR ERV1 -2 560 1 2134 109 3 0 chrX 150774897 150775190 -11824740 + AluSp SINE Alu 1 294 -19 446 296 40 33 chrX 150775624 150775776 -11824154 - MER91A DNA MER1_type -38 158 6 406 229 57 33 chrX 150776133 150776255 -11823675 + MIR SINE MIR 67 191 -71 333 198 161 0 chrX 150777750 150777831 -11822099 + MIR SINE MIR 169 262 0 235 351 18 73 chrX 150778156 150778321 -11821609 + L2 LINE L2 3116 3271 -1 189 368 15 15 chrX 150779188 150779256 -11820674 - MIR3 SINE MIR -126 82 15 1340 217 44 28 chrX 150779351 150779669 -11820261 + MER58B DNA MER1_type 2 324 -17 393 305 159 0 chrX 150779702 150779853 -11820077 + MER5A DNA MER1_type 9 183 -6 228 246 72 0 chrX 150779979 150780048 -11819882 + MIR SINE MIR 117 190 -72 467 241 26 0 chrX 150780049 150780165 -11819765 - MLT1C LTR MaLR 0 467 349 741 186 123 43 chrX 150780376 150780629 -11819301 - MLT1C LTR MaLR -142 325 53 584 289 30 6 chrX 150782018 150782184 -11817746 - MER5B DNA MER1_type -2 176 7 344 265 18 118 chrX 150782394 150782564 -11817366 + L2 LINE L2 3159 3311 -2 2219 113 0 0 chrX 150782839 150783148 -11816782 - AluSx SINE Alu -3 309 1 1017 283 123 30 chrX 150783663 150784192 -11815738 + L2 LINE L2 2742 3313 0 983 280 65 7 chrX 150785026 150785319 -11814611 + MLT1E3 LTR MaLR 315 624 0 1078 225 59 11 chrX 150785319 150785739 -11814191 + MLT1E3-int LTR MaLR 1 548 -823 1698 317 204 14 chrX 150785743 150786952 -11812978 + L2 LINE L2 1611 3047 -225 436 328 82 0 chrX 150787160 150787282 -11812648 + L2 LINE L2 3134 3265 -7 2003 303 11 42 chrX 150787434 150788263 -11811667 + L1M3c LINE L1 5 807 -5334 434 163 0 0 chrX 150788316 150788408 -11811522 + L1 LINE L1 3641 3732 -2414 * 1018 192 15 15 chrX 150788379 150788639 -11811291 + L1MA4 LINE L1 6037 6296 -4 * 5575 189 20 18 chrX 150788635 150789963 -11809967 + L1 LINE L1 3730 5060 -1086 330 45 0 0 chrX 150790076 150790120 -11809810 + (TG)n Simple_repeat Simple_repeat 2 45 0 314 361 6 0 chrX 150791012 150791170 -11808760 + CT-rich Low_complexity Low_complexity 2 160 0 3348 147 71 26 chrX 150792105 150792200 -11807730 - L1PA16 LINE L1 0 6166 6077 2143 111 47 42 chrX 150792200 150792561 -11807369 + THE1B LTR MaLR 1 363 -1 3348 147 71 26 chrX 150792561 150793126 -11806804 - L1PA16 LINE L1 -89 6077 5476 207 0 0 0 chrX 150793166 150793189 -11806741 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2511 61 0 10 chrX 150793189 150793499 -11806431 - AluY SINE Alu -3 308 2 4875 171 32 5 chrX 150794398 150795899 -11804031 - L1PA16 LINE L1 -25 6141 4616 4969 126 53 144 chrX 150796354 150796998 -11802932 - Tigger3b DNA MER2_type -1803 1225 524 2229 102 0 23 chrX 150796998 150797301 -11802629 + AluSc SINE Alu 1 296 -13 4969 126 53 144 chrX 150797301 150797791 -11802139 - Tigger3b DNA MER2_type -2504 524 231 2160 94 13 27 chrX 150797791 150798090 -11801840 - AluSp SINE Alu -18 295 1 4969 126 53 144 chrX 150798090 150798302 -11801628 - Tigger3b DNA MER2_type -2797 231 1 2312 82 0 0 chrX 150799772 150800064 -11799866 + AluY SINE Alu 20 311 0 30 45 0 0 chrX 150801891 150801935 -11797995 + AT_rich Low_complexity Low_complexity 1 44 0 11890 138 42 15 chrX 150802230 150804411 -11795519 - Tigger1 DNA MER2_type -1 2417 178 2236 154 24 0 chrX 150804522 150804932 -11794998 + LTR45B LTR ERV1 29 448 -41 21 36 0 0 chrX 150805417 150805445 -11794485 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 150805476 150805504 -11794426 + AT_rich Low_complexity Low_complexity 1 28 0 2016 127 20 0 chrX 150805791 150806083 -11793847 - AluSq SINE Alu -15 298 1 403 305 23 12 chrX 150808382 150808638 -11791292 - L1M4 LINE L1 -2023 4123 3865 290 305 108 5 chrX 150808648 150808871 -11791059 - L1MEc LINE L1 -6116 280 35 2324 81 3 10 chrX 150809301 150809608 -11790322 - AluY SINE Alu -6 305 1 2844 10 0 0 chrX 150812060 150812368 -11787562 + AluYa5 SINE Alu 1 308 -3 2680 91 11 16 chrX 150816719 150817094 -11782836 + THE1C LTR MaLR 1 373 -2 281 47 23 0 chrX 150818610 150818653 -11781277 + (CA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chrX 150818958 150818981 -11780949 + AT_rich Low_complexity Low_complexity 1 23 0 390 311 68 9 chrX 150819067 150819289 -11780641 + L1MEc LINE L1 44 278 -6118 289 323 0 0 chrX 150819414 150819513 -11780417 + L1 LINE L1 4019 4117 -2029 3069 98 144 16 chrX 150819815 150820376 -11779554 + LTR10E LTR ERV1 1 633 0 407 159 0 11 chrX 150820693 150820781 -11779149 + L1MA6 LINE L1 6214 6300 0 29 28 0 0 chrX 150820782 150820818 -11779112 + AT_rich Low_complexity Low_complexity 1 36 0 13098 165 48 17 chrX 150820824 150821457 -11778473 + L1PBa LINE L1 2 614 -6249 2233 104 3 28 chrX 150821457 150821775 -11778155 - AluSg SINE Alu 0 310 1 2338 121 0 0 chrX 150821775 150822080 -11777850 - AluSx SINE Alu -7 305 1 13098 165 48 17 chrX 150822080 150824103 -11775827 + L1PBa LINE L1 613 2743 -4120 2233 119 3 0 chrX 150824202 150824512 -11775418 - AluSq SINE Alu -2 311 1 502 255 44 28 chrX 150826727 150826978 -11772952 + L1 LINE L1 3863 4117 -2029 1543 186 53 0 chrX 150829385 150829670 -11770260 + AluSq SINE Alu 1 300 -13 1460 166 87 0 chrX 150829700 150829977 -11769953 - MER101 LTR ERV1 -150 324 24 9679 224 29 2 chrX 150830929 150833513 -11766417 + L1M2 LINE L1 2799 5450 -1398 1105 101 6 0 chrX 150833513 150833671 -11766259 + L1PB2 LINE L1 5991 6149 -2 287 254 0 17 chrX 150834643 150834761 -11765169 + GA-rich Low_complexity Low_complexity 2 117 0 2037 130 17 6 chrX 150834813 150835160 -11764770 - L1PB1 LINE L1 0 6151 5801 569 119 0 9 chrX 150835160 150835269 -11764661 + L1 LINE L1 4620 4727 -1419 21 36 0 0 chrX 150835508 150835536 -11764394 + AT_rich Low_complexity Low_complexity 1 28 0 1818 160 36 39 chrX 150835905 150836237 -11763693 + MER1B DNA MER1_type 2 332 -7 540 301 173 17 chrX 150836868 150837426 -11762504 + L2 LINE L2 2665 3303 -10 1947 135 75 35 chrX 150837727 150838074 -11761856 + THE1B LTR MaLR 1 361 -3 11439 91 14 2 chrX 150838077 150839638 -11760292 + THE1B-int LTR MaLR 1 1580 0 2093 123 71 31 chrX 150839638 150839988 -11759942 + THE1B LTR MaLR 1 364 0 4532 213 5 7 chrX 150840346 150841423 -11758507 + L1P LINE L1 3821 4895 -1251 321 231 32 20 chrX 150841982 150842238 -11757692 + GA-rich Low_complexity Low_complexity 1 259 0 243 226 0 48 chrX 150842269 150842415 -11757515 + GA-rich Low_complexity Low_complexity 5 143 0 226 127 0 55 chrX 150842614 150842669 -11757261 + (GAGAA)n Simple_repeat Simple_repeat 4 55 0 2282 82 0 10 chrX 150842695 150843044 -11756886 + AluY SINE Alu 1 311 0 221 83 28 0 chrX 150843266 150843302 -11756628 + (TA)n Simple_repeat Simple_repeat 2 38 0 404 239 254 0 chrX 150844347 150844485 -11755445 - MER5A DNA MER1_type -6 183 11 1108 165 0 5 chrX 150844502 150844702 -11755228 + MER3 DNA MER1_type 5 203 -6 1049 221 9 9 chrX 150844726 150844943 -11754987 - MER58A DNA MER1_type -7 217 1 333 0 0 0 chrX 150845203 150845240 -11754690 + (CA)n Simple_repeat Simple_repeat 1 37 0 5359 224 22 25 chrX 150846307 150848527 -11751403 - L1PBa LINE L1 -5219 1644 3 4189 98 97 5 chrX 150848701 150849473 -11750457 - L1PBa LINE L1 -4123 2740 1898 2498 39 13 0 chrX 150849492 150849801 -11750129 - L1PA4 LINE L1 0 6155 5843 843 75 33 0 chrX 150849801 150849921 -11750009 + L1PA4 LINE L1 5751 5874 -280 571 162 0 0 chrX 150849905 150850004 -11749926 - L1MA4 LINE L1 -323 5977 5879 * 1116 243 35 93 chrX 150850006 150850535 -11749395 + MLT1E LTR MaLR 150 593 0 188 326 37 37 chrX 150851395 150851530 -11748400 + L2 LINE L2 3138 3272 0 209 338 110 19 chrX 150852021 150852175 -11747755 - L2 LINE L2 -21 3292 3125 297 295 171 19 chrX 150852256 150852361 -11747569 - MIR SINE MIR -70 138 18 471 254 18 9 chrX 150852788 150852902 -11747028 + MIR SINE MIR 20 134 -128 414 345 21 7 chrX 150853517 150853662 -11746268 + MIR3 SINE MIR 41 187 -21 355 283 22 0 chrX 150853681 150853773 -11746157 - MER5A DNA MER1_type -83 106 13 1701 206 57 36 chrX 150854565 150855006 -11744924 - MLT1D LTR MaLR 0 505 56 36327 81 7 12 chrX 150855270 150861438 -11738492 - L1PA6 LINE L1 -2 6152 11 2182 121 10 0 chrX 150861533 150861840 -11738090 + AluSg SINE Alu 1 310 0 297 213 0 0 chrX 150861855 150861916 -11738014 + MIR SINE MIR 69 129 -133 556 291 30 15 chrX 150862506 150862709 -11737221 + LTR16B LTR ERVL 257 462 -2 183 293 0 0 chrX 150862714 150862755 -11737175 - MIR SINE MIR -135 73 33 433 120 71 16 chrX 150862776 150863090 -11736840 + (TA)n Simple_repeat Simple_repeat 1 331 0 190 220 0 60 chrX 150863730 150863780 -11736150 - L2 LINE L2 -12 3301 3255 239 174 203 0 chrX 150864408 150864477 -11735453 + MIR3 SINE MIR 121 203 -5 255 313 12 0 chrX 150865056 150865139 -11734791 - MIR3 SINE MIR -1 207 124 626 237 0 26 chrX 150866132 150866288 -11733642 - MLT1B LTR MaLR -6 384 233 387 113 0 0 chrX 150866320 150866382 -11733548 + (GA)n Simple_repeat Simple_repeat 2 63 0 484 185 82 82 chrX 150866400 150866584 -11733346 - MLT1B LTR MaLR -206 184 1 690 220 25 13 chrX 150867777 150867936 -11731994 - MER58B DNA MER1_type -8 333 173 2730 121 35 2 chrX 150867956 150868387 -11731543 - L1PA16 LINE L1 -9 6157 5713 18724 190 31 13 chrX 150868692 150872924 -11727006 + L1M1 LINE L1 12 4345 -3220 2756 16 0 0 chrX 150872924 150873232 -11726698 + AluYa5 SINE Alu 1 308 -3 18724 190 31 13 chrX 150873232 150873817 -11726113 + L1M1 LINE L1 4345 4918 -2647 3295 196 14 55 chrX 150873923 150874781 -11725149 + L1M1 LINE L1 4846 5668 -1897 1621 148 39 39 chrX 150874817 150875181 -11724749 + THE1C LTR MaLR 12 375 0 4032 185 10 55 chrX 150875181 150876228 -11723702 + L1M1 LINE L1 5664 6662 -903 713 232 18 0 chrX 150876229 150876397 -11723533 + MLT2B3 LTR ERVL 2 172 -382 2092 140 16 35 chrX 150877045 150877416 -11722514 + THE1B LTR MaLR 1 364 0 320 184 26 9 chrX 150877792 150877906 -11722024 + (TA)n Simple_repeat Simple_repeat 1 116 0 587 230 197 5 chrX 150878223 150878436 -11721494 - L2 LINE L2 -1052 2262 2009 2072 120 64 19 chrX 150878737 150879096 -11720834 + THE1C LTR MaLR 1 375 0 10156 120 36 3 chrX 150879096 150880626 -11719304 + THE1C-int LTR MaLR 1 1580 0 1871 141 69 30 chrX 150880626 150880987 -11718943 + THE1C LTR MaLR 1 375 0 213 254 0 30 chrX 150880988 150881055 -11718875 + (CATA)n Simple_repeat Simple_repeat 2 66 0 642 210 17 17 chrX 150881086 150881262 -11718668 + MER96B DNA MER1_type? 209 384 -33 825 227 0 11 chrX 150881300 150881485 -11718445 - L2 LINE L2 -1300 2014 1832 1103 231 78 61 chrX 150881487 150881899 -11718031 - MER74B LTR ERVL 0 622 204 232 226 0 0 chrX 150881976 150882029 -11717901 - MER74B LTR ERVL -569 53 1 1085 90 0 0 chrX 150882683 150882817 -11717113 + AluY SINE Alu 1 134 -177 1869 159 0 0 chrX 150882817 150883112 -11716818 + AluY SINE Alu 1 295 -16 1436 191 168 0 chrX 150883450 150883759 -11716171 - MLT1A1 LTR MaLR 0 365 5 250 329 51 9 chrX 150884573 150884718 -11715212 - MIR SINE MIR -33 175 23 2169 153 35 28 chrX 150884896 150885321 -11714609 - MSTA LTR MaLR 0 428 1 214 162 0 0 chrX 150885559 150885596 -11714334 + (TG)n Simple_repeat Simple_repeat 2 38 0 576 237 160 19 chrX 150886052 150886208 -11713722 + MER5A DNA MER1_type 4 181 -8 209 317 37 0 chrX 150886669 150886751 -11713179 + MIR3 SINE MIR 107 191 -17 553 228 116 37 chrX 150887448 150887637 -11712293 + MIR SINE MIR 13 216 -46 1503 160 6 118 chrX 150887643 150887975 -11711955 + AluJb SINE Alu 5 299 -3 1559 243 55 21 chrX 150888269 150888738 -11711192 + MLT2B1 LTR ERVL 1 485 -35 240 35 0 0 chrX 150888741 150888765 -11711165 + (TC)n Simple_repeat Simple_repeat 1 53 0 240 35 0 0 chrX 150888765 150888794 -11711136 + (TC)n Simple_repeat Simple_repeat 2 30 0 291 139 0 56 chrX 150888870 150888942 -11710988 + MLT2B1 LTR ERVL 449 516 -4 3506 185 18 56 chrX 150890668 150890905 -11709025 + L1MB2 LINE L1 5110 5355 -816 950 209 18 103 chrX 150890905 150891302 -11708628 + MLT1A1 LTR MaLR 3 365 0 3506 185 18 56 chrX 150891302 150891993 -11707937 + L1MB2 LINE L1 5355 6003 -168 2364 81 0 3 chrX 150891993 150892301 -11707629 + AluY SINE Alu 1 307 -4 3506 185 18 56 chrX 150892301 150892409 -11707521 + L1MB2 LINE L1 6003 6114 -57 337 279 36 0 chrX 150892415 150892526 -11707404 - L1M4 LINE L1 -2927 3455 3341 2210 59 0 10 chrX 150892726 150893016 -11706914 - AluY SINE Alu -24 287 1 897 172 0 0 chrX 150893247 150893427 -11706503 + (TG)n Simple_repeat Simple_repeat 1 180 0 1419 203 25 37 chrX 150893615 150894023 -11705907 - L1M4 LINE L1 -4645 1739 1337 7360 40 0 1 chrX 150894028 150895124 -11704806 + L1PA4 LINE L1 5058 6152 -3 1742 151 12 27 chrX 150895133 150895471 -11704459 + L1MA4 LINE L1 5959 6291 -9 399 250 137 12 chrX 150895491 150895659 -11704271 - MLT1E LTR MaLR -454 139 1 21 71 0 0 chrX 150896464 150896506 -11703424 + AT_rich Low_complexity Low_complexity 1 42 0 289 353 25 8 chrX 150896837 150896959 -11702971 + MIR SINE MIR 31 154 -108 300 316 34 8 chrX 150897064 150897181 -11702749 + MIR SINE MIR 143 262 0 827 90 0 28 chrX 150897571 150897715 -11702215 + (TTC)n Simple_repeat Simple_repeat 2 141 0 371 279 72 85 chrX 150898054 150898377 -11701553 + L2 LINE L2 2579 2898 -416 2218 123 0 22 chrX 150898377 150898694 -11701236 - AluSx SINE Alu -2 310 1 371 279 72 85 chrX 150898694 150898746 -11701184 + L2 LINE L2 2898 2949 -365 824 254 19 75 chrX 150899694 150900068 -11699862 - L1ME3 LINE L1 -3 6159 5807 1138 244 45 3 chrX 150900070 150900357 -11699573 - MLT1A1 LTR MaLR -66 299 1 1973 148 19 40 chrX 150900696 150901068 -11698862 + MLT1A1 LTR MaLR 1 364 -1 1099 168 45 45 chrX 150901070 150901361 -11698569 - L1 LINE L1 -3499 2647 2357 635 211 0 39 chrX 150901520 150901676 -11698254 - L1 LINE L1 -2059 4087 3938 351 331 63 97 chrX 150902544 150903018 -11696912 + HAL1 LINE L1 529 986 -1521 1195 188 74 139 chrX 150903021 150903608 -11696322 + MLT1F1 LTR MaLR 6 639 -15 2304 160 10 2 chrX 150903608 150904008 -11695922 + MER57A LTR ERV1 1 403 0 1195 188 74 139 chrX 150904008 150904024 -11695906 + MLT1F1 LTR MaLR 639 654 0 332 189 75 101 chrX 150904034 150904193 -11695737 + HAL1 LINE L1 993 1147 -1360 353 269 31 62 chrX 150904201 150904394 -11695536 + HAL1 LINE L1 1198 1384 -1123 324 329 63 7 chrX 150904453 150904596 -11695334 + HAL1 LINE L1 1450 1600 -907 336 230 119 8 chrX 150904623 150904749 -11695181 - MLT1J LTR MaLR -31 480 341 541 250 141 5 chrX 150904828 150905012 -11694918 - MLT1J LTR MaLR -300 211 3 481 298 103 20 chrX 150905013 150905315 -11694615 + HAL1 LINE L1 1594 1920 -587 221 0 0 33 chrX 150905391 150905421 -11694509 + (CAA)n Simple_repeat Simple_repeat 2 30 0 377 114 100 0 chrX 150905923 150905993 -11693937 - L1MC1 LINE L1 -141 6192 6116 732 224 298 15 chrX 150906581 150906829 -11693101 + LTR52 LTR ERVL 1 178 -243 477 0 0 0 chrX 150906829 150906882 -11693048 + (TG)n Simple_repeat Simple_repeat 1 53 0 732 224 298 15 chrX 150906882 150906959 -11692971 + LTR52 LTR ERVL 178 418 -3 688 239 65 57 chrX 150907457 150907687 -11692243 + MIR SINE MIR 31 262 0 224 330 87 10 chrX 150908238 150908341 -11691589 + L2 LINE L2 3162 3272 0 21 0 0 0 chrX 150908359 150908380 -11691550 + AT_rich Low_complexity Low_complexity 1 21 0 2009 125 4 4 chrX 150908389 150908669 -11691261 - AluSx SINE Alu -32 280 1 3733 23 0 2 chrX 150909373 150909869 -11690061 + L1PA4 LINE L1 5716 6210 0 827 230 87 0 chrX 150910441 150910706 -11689224 + MER33 DNA MER1_type 35 322 -2 1960 130 143 29 chrX 150910934 150911318 -11688612 - MSTA LTR MaLR 0 428 1 183 316 0 76 chrX 150911387 150911466 -11688464 + L2 LINE L2 3191 3263 -9 26 0 0 0 chrX 150911690 150911716 -11688214 + AT_rich Low_complexity Low_complexity 1 26 0 983 250 52 9 chrX 150911737 150912065 -11687865 - L1P LINE L1 -1696 4450 4109 425 335 0 0 chrX 150912123 150912287 -11687643 + T-rich Low_complexity Low_complexity 1 164 0 389 306 6 29 chrX 150912244 150912417 -11687513 + CT-rich Low_complexity Low_complexity 2 170 0 * 180 97 0 0 chrX 150913796 150913827 -11686103 + (A)n Simple_repeat Simple_repeat 1 31 0 1963 101 66 0 chrX 150913833 150914120 -11685810 + AluSc SINE Alu 1 306 -3 614 253 80 0 chrX 150915388 150915550 -11684380 - MER96 DNA MER1_type 0 175 1 430 152 22 0 chrX 150916674 150916766 -11683164 + CT-rich Low_complexity Low_complexity 1 94 0 493 246 18 64 chrX 150916790 150916961 -11682969 + MIR SINE MIR 5 167 -95 624 255 66 33 chrX 150917075 150917287 -11682643 - MIR SINE MIR -12 250 32 281 245 143 31 chrX 150917294 150917392 -11682538 - MIR SINE MIR -98 164 56 2324 109 37 100 chrX 150917849 150918308 -11681622 - MSTB1 LTR MaLR -1 431 2 202 222 256 11 chrX 150919019 150919109 -11680821 + MIR SINE MIR 147 258 -4 1709 59 0 22 chrX 150919862 150920084 -11679846 + AluSg/x SINE Alu 96 312 0 505 331 32 16 chrX 150920289 150920614 -11679316 + MLT1I LTR MaLR 68 450 0 660 305 30 9 chrX 150920616 150920972 -11678958 - L1MC/D LINE L1 -313 5808 5446 22 35 0 0 chrX 150921346 150921375 -11678555 + AT_rich Low_complexity Low_complexity 1 29 0 226 209 0 0 chrX 150921567 150921610 -11678320 + GA-rich Low_complexity Low_complexity 4 46 0 1315 190 63 157 chrX 150922821 150923394 -11676536 + MLT2B1 LTR ERVL 1 519 -1 272 208 0 158 chrX 150923831 150923889 -11676041 + L1MD1 LINE L1 6130 6161 -81 2208 106 0 3 chrX 150923889 150924182 -11675748 - AluSx SINE Alu -18 294 3 272 208 0 158 chrX 150924182 150924243 -11675687 + L1MD1 LINE L1 6161 6230 -12 206 240 27 67 chrX 150924982 150925057 -11674873 - L2 LINE L2 -106 3207 3136 532 324 131 10 chrX 150925173 150925464 -11674466 - L2 LINE L2 -279 3034 2712 897 232 29 33 chrX 150925622 150925863 -11674067 + MIR SINE MIR 19 258 -4 427 328 16 0 chrX 150925979 150926132 -11673798 + MIR SINE MIR 6 164 -58 575 252 29 141 chrX 150926134 150926285 -11673645 - MLT1J LTR MaLR -3 508 342 2107 124 0 10 chrX 150926285 150926591 -11673339 + AluSx SINE Alu 1 303 -9 575 252 29 141 chrX 150926591 150926892 -11673038 - MLT1J LTR MaLR -169 342 107 2910 203 7 3 chrX 150927033 150927609 -11672321 + Tigger7 DNA MER2_type 1 578 -155 861 139 0 86 chrX 150927602 150927660 -11672270 + Tigger7 DNA MER2_type 2372 2433 -154 * 2257 120 7 0 chrX 150927660 150927969 -11671961 - AluSx SINE Alu -1 311 1 861 139 0 86 chrX 150927969 150928119 -11671811 + Tigger7 DNA MER2_type 2433 2562 -25 205 288 0 34 chrX 150928122 150928181 -11671749 + L2 LINE L2 3237 3293 -20 221 77 51 0 chrX 150979616 150979655 -11620275 + A-rich Low_complexity Low_complexity 2 42 0 357 270 120 0 chrX 150980664 150980764 -11619166 - MIR SINE MIR -15 247 136 901 242 45 19 chrX 150980767 150981031 -11618899 - L1M1 LINE L1 -7279 286 16 186 200 25 0 chrX 150981036 150981076 -11618854 - MIR SINE MIR -114 148 108 18245 154 12 57 chrX 150981437 150989035 -11610895 - L1PA14 LINE L1 -2 7597 2 327 285 200 24 chrX 150989141 150989306 -11610624 + MIR SINE MIR 59 252 -10 436 279 107 8 chrX 150989735 150989857 -11610073 - L2 LINE L2 0 3272 3139 188 354 73 0 chrX 150990000 150990096 -11609834 + L2 LINE L2 2577 2679 -635 228 213 0 0 chrX 150990210 150990257 -11609673 + (CA)n Simple_repeat Simple_repeat 2 48 0 512 309 28 6 chrX 150991347 150991525 -11608405 - MIR SINE MIR 0 262 81 4265 174 14 38 chrX 150991646 150992509 -11607421 - L1MB4 LINE L1 -4 6176 5335 2554 121 3 0 chrX 150992509 150992872 -11607058 + THE1B LTR MaLR 1 364 0 4265 174 14 38 chrX 150992872 150992925 -11607005 - L1MB4 LINE L1 -845 5335 5282 22 0 0 0 chrX 150992925 150992947 -11606983 + AT_rich Low_complexity Low_complexity 1 22 0 180 347 104 46 chrX 150993155 150993328 -11606602 - L2 LINE L2 -212 3060 2878 502 315 60 32 chrX 150994442 150994658 -11605272 - MLT1J2 LTR MaLR -53 397 176 394 236 72 36 chrX 150994713 150994908 -11605022 + MER34B LTR ERV1 359 560 -5 407 198 0 12 chrX 150994912 150994993 -11604937 + MER20 DNA MER1_type 140 219 0 325 284 167 0 chrX 150994998 150995100 -11604830 + L2 LINE L2 3153 3271 -1 306 245 13 112 chrX 150995536 150995769 -11604161 - L1ME4a LINE L1 -199 5922 5713 2510 137 16 20 chrX 150995906 150996350 -11603580 - L1MA2 LINE L1 -106 7617 7176 652 124 0 0 chrX 150996374 150996471 -11603459 - L1PA10 LINE L1 -11 6157 6061 5810 104 43 1 chrX 150996472 150997331 -11602599 - L1PA10 LINE L1 -1 6167 5273 13515 197 28 26 chrX 150997334 151000032 -11599898 - L1P3 LINE L1 -2384 4077 1266 189 0 0 0 chrX 151000032 151000053 -11599877 + (TTG)n Simple_repeat Simple_repeat 1 21 0 13515 197 28 26 chrX 151000053 151001321 -11598609 - L1P3 LINE L1 -5195 1266 2 4221 168 7 1 chrX 151001319 151002600 -11597330 - L1MA2 LINE L1 -538 7185 5896 * 8550 196 21 15 chrX 151002572 151006510 -11593420 - L1MA2 LINE L1 -3220 4345 20 280 262 0 0 chrX 151006735 151006796 -11593134 + MER82 DNA MER2_type 45 105 -548 200 346 19 19 chrX 151006904 151007011 -11592919 - MIR SINE MIR -69 139 33 777 268 14 14 chrX 151007090 151007299 -11592631 + MER82 DNA MER2_type 444 652 -1 1422 245 57 26 chrX 151007570 151008060 -11591870 - MLT1D LTR MaLR 0 505 1 653 279 16 11 chrX 151010443 151010626 -11589304 + LTR33 LTR ERVL 103 286 -235 306 343 116 0 chrX 151010776 151010957 -11588973 + L3 LINE CR1 1263 1464 -113 918 43 0 0 chrX 151011059 151011174 -11588756 - L1PA2 LINE L1 -1 6154 6040 363 0 0 0 chrX 151011174 151011223 -11588707 + L1PA3 LINE L1 5969 6017 -138 224 163 0 20 chrX 151011597 151011646 -11588284 + CT-rich Low_complexity Low_complexity 4 51 0 203 167 0 0 chrX 151011773 151011815 -11588115 + A-rich Low_complexity Low_complexity 1 42 0 215 313 0 0 chrX 151011836 151011884 -11588046 - L2 LINE L2 -88 3184 3137 31 26 0 0 chrX 151012279 151012317 -11587613 + AT_rich Low_complexity Low_complexity 1 38 0 665 250 5 37 chrX 151013284 151013500 -11586430 - MER3 DNA MER1_type 0 209 1 237 65 0 0 chrX 151014260 151014291 -11585639 + (CA)n Simple_repeat Simple_repeat 1 31 0 2194 119 46 30 chrX 151014292 151014661 -11585269 + THE1C LTR MaLR 1 375 0 9030 142 29 42 chrX 151014661 151016262 -11583668 + THE1C-int LTR MaLR 1 1580 0 2037 148 44 14 chrX 151016262 151016626 -11583304 + THE1C LTR MaLR 1 375 0 2296 98 7 0 chrX 151017040 151017345 -11582585 - AluSc SINE Alu -2 307 1 306 287 32 11 chrX 151017362 151017456 -11582474 + MIR SINE MIR 167 262 0 202 378 54 0 chrX 151018161 151018272 -11581658 + MER5A DNA MER1_type 43 159 -30 2231 124 48 20 chrX 151018461 151018815 -11581115 - THE1B LTR MaLR 0 364 1 11193 113 3 1 chrX 151018815 151020391 -11579539 - THE1B-int LTR MaLR 0 1580 1 1812 133 48 82 chrX 151020391 151020442 -11579488 - THE1B LTR MaLR 0 364 313 488 175 0 21 chrX 151020442 151020539 -11579391 + L1PA8A LINE L1 6037 6131 0 1812 133 48 82 chrX 151020539 151020864 -11579066 - THE1B LTR MaLR -51 313 1 19547 89 7 4 chrX 151021016 151023722 -11576208 - HERVL LTR ERVL -893 4761 2050 4558 112 1 0 chrX 151023716 151024383 -11575547 - HERVL LTR ERVL -3740 1914 1247 * 1724 102 13 66 chrX 151024385 151024689 -11575241 + L1PA13 LINE L1 5861 6148 -15 1222 235 30 15 chrX 151024712 151025107 -11574823 - L1M4 LINE L1 -2122 4024 3624 1665 84 17 8 chrX 151025477 151025714 -11574216 - L1PA11 LINE L1 0 6174 5936 3865 236 35 54 chrX 151025714 151026561 -11573369 + L1PA10 LINE L1 347 1209 -5252 194 0 39 0 chrX 151026561 151026587 -11573343 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 3865 236 35 54 chrX 151026587 151026694 -11573236 + L1PA10 LINE L1 1209 1317 -5144 213 65 0 0 chrX 151026694 151026725 -11573205 + (CAA)n Simple_repeat Simple_repeat 1 31 0 3865 236 35 54 chrX 151026725 151027658 -11572272 + L1PA10 LINE L1 1317 2294 -4167 8771 144 10 0 chrX 151027658 151029921 -11570009 + L1PA10 LINE L1 4195 6477 -6 509 286 23 14 chrX 151029935 151030155 -11569775 + L1ME1 LINE L1 3331 3552 -2594 1348 223 96 49 chrX 151030155 151030591 -11569339 - MLT1D LTR MaLR 0 505 60 4823 238 40 23 chrX 151030591 151032733 -11567197 + L1ME1 LINE L1 3574 5752 -414 1192 203 36 90 chrX 151032747 151032824 -11567106 + MLT1A1 LTR MaLR 10 90 -275 2361 36 4 4 chrX 151032824 151033157 -11566773 + AluY SINE Alu 1 333 0 1192 203 36 90 chrX 151033157 151033443 -11566487 + MLT1A1 LTR MaLR 90 354 -11 981 245 26 59 chrX 151033452 151033877 -11566053 + L1ME1 LINE L1 5755 6165 -1 26 0 0 0 chrX 151033922 151033948 -11565982 + AT_rich Low_complexity Low_complexity 1 26 0 193 286 16 16 chrX 151033993 151034056 -11565874 - MIR3 SINE MIR -135 73 11 4079 153 37 5 chrX 151034161 151034912 -11565018 - L1PA16 LINE L1 0 6166 5392 488 268 163 7 chrX 151035200 151035353 -11564577 + MER5A DNA MER1_type 7 183 -6 205 342 126 32 chrX 151035617 151035807 -11564123 + L2 LINE L2 3096 3303 -10 1997 265 71 23 chrX 151035816 151036690 -11563240 - L1ME3A LINE L1 -1 6169 5254 1257 174 159 4 chrX 151036782 151037052 -11562878 + AluSq SINE Alu 1 312 -1 5081 99 33 18 chrX 151037275 151038043 -11561887 - LTR19C LTR ERV1 0 779 1 2235 76 7 30 chrX 151038259 151038562 -11561368 - AluY SINE Alu -15 296 1 2429 64 3 0 chrX 151038707 151039002 -11560928 - AluSp SINE Alu -16 297 2 389 153 0 10 chrX 151039020 151039096 -11560834 + MER5A DNA MER1_type 4 78 -111 1916 134 7 7 chrX 151039996 151040287 -11559643 + AluSq SINE Alu 1 291 -22 4751 53 5 0 chrX 151040701 151041289 -11558641 - LTR10C LTR ERV1 0 591 1 216 0 0 0 chrX 151041415 151041439 -11558491 + (TG)n Simple_repeat Simple_repeat 1 24 0 250 305 13 21 chrX 151042107 151042233 -11557697 + MIR SINE MIR 16 169 -93 249 33 0 0 chrX 151042259 151042289 -11557641 + (CA)n Simple_repeat Simple_repeat 1 30 0 323 310 20 0 chrX 151042440 151042540 -11557390 + MIR3 SINE MIR 58 159 -49 466 295 133 6 chrX 151043164 151043330 -11556600 + MIR SINE MIR 32 218 -44 22 0 0 0 chrX 151044225 151044247 -11555683 + AT_rich Low_complexity Low_complexity 1 22 0 2829 10 0 0 chrX 151044598 151044908 -11555022 - AluYa5 SINE Alu -1 310 1 2404 107 0 0 chrX 151045015 151045324 -11554606 + AluSg SINE Alu 2 310 0 483 273 49 80 chrX 151045698 151046095 -11553835 - LTR33 LTR ERVL 0 521 38 347 261 138 35 chrX 151048025 151048396 -11551534 - HAL1 LINE L1 -146 2361 1953 340 331 33 0 chrX 151048469 151048590 -11551340 - HAL1 LINE L1 -649 1858 1734 382 232 3 1 chrX 151048679 151048786 -11551144 - MLT1H LTR MaLR -359 190 45 516 72 0 0 chrX 151048943 151049012 -11550918 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 2209 99 36 0 chrX 151049012 151049495 -11550435 - AluSp SINE Alu 0 313 1 429 266 41 10 chrX 151050246 151050437 -11549493 + L1MC4a LINE L1 5639 5832 -316 515 282 272 0 chrX 151050451 151050653 -11549277 + MIR SINE MIR 6 262 0 330 286 30 79 chrX 151051199 151051402 -11548528 - MIR SINE MIR -64 198 6 2246 121 0 9 chrX 151052307 151052622 -11547308 + AluSx SINE Alu 1 312 0 251 326 37 41 chrX 151053378 151053596 -11546334 - L2 LINE L2 -881 2433 2217 2261 101 0 0 chrX 151053721 151054018 -11545912 + AluSg SINE Alu 1 297 -13 793 158 54 49 chrX 151054036 151054220 -11545710 + MER53 DNA DNA 2 186 -3 1460 350 112 26 chrX 151054531 151055997 -11543933 - L2 LINE L2 -5 3267 1682 817 156 0 0 chrX 151056023 151056145 -11543785 - AluJb SINE Alu -188 124 3 476 314 98 35 chrX 151056173 151056664 -11543266 - L2 LINE L2 -1605 1709 1188 448 239 0 64 chrX 151057796 151057905 -11542025 - L2 LINE L2 -18 3254 3153 3765 100 5 20 chrX 151059068 151059630 -11540300 + MER41A LTR ERV1 1 554 0 241 268 0 0 chrX 151059843 151059899 -11540031 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 235 293 30 0 chrX 151060111 151060244 -11539686 + L1MEd LINE L1 702 838 -5281 305 329 22 37 chrX 151060359 151060681 -11539249 + L1MEd LINE L1 2587 2903 -3226 550 0 0 28 chrX 151060827 151060899 -11539031 + (GAA)n Simple_repeat Simple_repeat 3 72 0 352 283 126 15 chrX 151060980 151061178 -11538752 + L1MEd LINE L1 3162 3381 -2748 204 294 69 69 chrX 151062030 151062132 -11537798 - MIR SINE MIR -65 143 42 671 100 0 0 chrX 151062188 151062288 -11537642 + L1PA4 LINE L1 6056 6155 0 21 0 0 0 chrX 151063971 151063992 -11535938 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 151064602 151064623 -11535307 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 151065936 151065957 -11533973 + AT_rich Low_complexity Low_complexity 1 21 0 394 284 156 7 chrX 151066668 151066809 -11533121 - L2 LINE L2 -276 3037 2876 728 280 230 15 chrX 151066922 151067322 -11532608 - L2 LINE L2 -965 2349 1864 892 300 63 38 chrX 151067355 151067702 -11532228 - L2 LINE L2 -2655 659 304 260 296 68 28 chrX 151067719 151068223 -11531707 + L1P LINE L1 4824 5351 -795 21 0 0 0 chrX 151068370 151068391 -11531539 + AT_rich Low_complexity Low_complexity 1 21 0 2463 53 0 7 chrX 151068569 151068872 -11531058 - AluY SINE Alu -10 301 1 369 287 165 0 chrX 151069557 151069721 -11530209 - L1ME1 LINE L1 -4 6162 5972 327 252 104 90 chrX 151069746 151069968 -11529962 + L1ME4a LINE L1 5880 6104 -17 6853 19 0 0 chrX 151069981 151070769 -11529161 - L1PA3 LINE L1 -6 6149 5362 321 104 0 0 chrX 151070768 151070816 -11529114 - L1M1 LINE L1 -4533 3032 2985 * 8326 203 21 8 chrX 151070815 151072406 -11527524 - L1M1 LINE L1 -5879 1686 74 267 253 0 0 chrX 151072474 151072553 -11527377 + (TA)n Simple_repeat Simple_repeat 1 79 0 396 0 0 0 chrX 151072785 151072829 -11527101 + (TG)n Simple_repeat Simple_repeat 2 45 0 204 128 64 0 chrX 151072830 151072877 -11527053 + (TA)n Simple_repeat Simple_repeat 2 51 0 350 170 64 43 chrX 151072882 151072976 -11526954 - L1MC4 LINE L1 -1337 6705 6610 264 296 53 66 chrX 151073633 151073785 -11526145 + MLT1L LTR MaLR 8 157 -458 242 270 32 0 chrX 151073873 151073936 -11525994 - MER20B DNA MER1_type -681 102 38 356 244 95 95 chrX 151073969 151074099 -11525831 + MLT1L LTR MaLR 159 291 -324 2389 90 0 3 chrX 151074099 151074400 -11525530 + AluSg SINE Alu 1 300 -10 356 244 95 95 chrX 151074400 151074490 -11525440 + MLT1L LTR MaLR 290 379 -236 366 271 12 0 chrX 151075034 151075119 -11524811 - L2 LINE L2 -8 3264 3179 229 296 96 37 chrX 151075314 151075449 -11524481 - L2 LINE L2 -90 3223 3081 944 264 8 38 chrX 151075770 151076035 -11523895 + MIR SINE MIR 3 259 -3 602 346 61 3 chrX 151076473 151076800 -11523130 - L2 LINE L2 -1489 1825 1480 446 371 71 38 chrX 151076801 151077221 -11522709 - L2 LINE L2 -2016 1298 865 1096 301 50 15 chrX 151077340 151078193 -11521737 + L1M4 LINE L1 2855 3737 -2409 927 261 88 0 chrX 151078209 151078470 -11521460 + L2 LINE L2 2524 2807 -507 784 234 72 27 chrX 151078473 151078695 -11521235 + MER58 DNA MER1_type 1 232 -2188 684 267 203 27 chrX 151078707 151079081 -11520849 + L2 LINE L2 2874 3313 0 281 348 95 0 chrX 151079096 151079254 -11520676 - MIR SINE MIR 0 262 90 318 256 35 23 chrX 151080058 151080144 -11519786 - MER5B DNA MER1_type -3 175 89 600 175 21 0 chrX 151080147 151080290 -11519640 - L1 LINE L1 -2932 3214 3069 1572 209 0 0 chrX 151080291 151080612 -11519318 - L1 LINE L1 -3557 2589 2269 1339 199 52 0 chrX 151080613 151080884 -11519046 - L1PBa LINE L1 -6578 285 1 381 315 63 7 chrX 151081080 151081223 -11518707 + MIR SINE MIR 11 161 -101 248 282 81 81 chrX 151081370 151081629 -11518301 + L2 LINE L2 2168 2426 -888 422 203 109 0 chrX 151081784 151081924 -11518006 + MIR SINE MIR 3 164 -65 241 82 41 0 chrX 151082236 151082285 -11517645 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 199 336 86 70 chrX 151082535 151082779 -11517151 + L2 LINE L2 2578 2825 -489 478 204 59 66 chrX 151083940 151084092 -11515838 - MIR SINE MIR -52 210 60 258 292 0 0 chrX 151084271 151084336 -11515594 + MER81 DNA DNA 15 79 -35 2222 102 3 0 chrX 151084433 151084763 -11515167 - AluSc SINE Alu 0 309 1 13152 173 31 21 chrX 151087155 151089863 -11510067 + L1M1 LINE L1 15 3446 -4119 5567 199 43 16 chrX 151089859 151091156 -11508774 + L1M1 LINE L1 4587 5918 -1647 * 4601 104 19 14 chrX 151091159 151091878 -11508052 + L1MA2 LINE L1 5581 6303 -1 395 325 10 25 chrX 151093322 151093697 -11506233 + GA-rich Low_complexity Low_complexity 1 369 0 2278 97 3 0 chrX 151094508 151094807 -11505123 - AluSg SINE Alu -10 300 1 183 270 135 0 chrX 151095081 151095170 -11504760 + MIR SINE MIR 131 231 -31 329 255 87 34 chrX 151095291 151095440 -11504490 - L1ME4a LINE L1 -30 6091 5935 773 247 32 0 chrX 151095468 151095626 -11504304 + MER45A DNA AcHobo 13 175 -3 285 246 46 46 chrX 151095666 151095796 -11504134 - L1ME4a LINE L1 -201 5920 5791 374 104 0 15 chrX 151097103 151097170 -11502760 - L1MA4A LINE L1 -6 6297 6232 13294 192 26 18 chrX 151097174 151100039 -11499891 - L1 LINE L1 -757 6808 3965 1023 156 0 0 chrX 151100039 151100218 -11499712 + (TA)n Simple_repeat Simple_repeat 2 180 0 13294 192 26 18 chrX 151100218 151101635 -11498295 - L1 LINE L1 -3600 3965 2481 1090 35 28 0 chrX 151101635 151101780 -11498150 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 13294 192 26 18 chrX 151101780 151102581 -11497349 - L1 LINE L1 -5084 2481 1687 3336 196 0 3 chrX 151103289 151103861 -11496069 - L1 LINE L1 -5874 1691 1122 4674 238 24 1 chrX 151103863 151104881 -11495049 - L1 LINE L1 -6503 1062 22 1606 186 6 34 chrX 151104882 151105176 -11494754 - L1 LINE L1 -2182 4666 4382 270 0 0 0 chrX 151105176 151105206 -11494724 + (TG)n Simple_repeat Simple_repeat 1 30 0 1606 186 6 34 chrX 151105206 151105266 -11494664 - L1 LINE L1 -2466 4382 4322 2749 223 72 6 chrX 151105266 151106063 -11493867 - L1 LINE L1 -2851 3997 3149 494 150 26 0 chrX 151106072 151106225 -11493705 + (TA)n Simple_repeat Simple_repeat 1 157 0 1436 197 117 8 chrX 151106260 151106620 -11493310 - L1PA13 LINE L1 -3 6160 5762 * 2546 204 44 8 chrX 151106593 151107421 -11492509 - L1 LINE L1 -3743 3105 2252 1864 175 19 26 chrX 151107422 151107800 -11492130 + THE1C LTR MaLR 1 375 0 10311 114 17 36 chrX 151107800 151109411 -11490519 + THE1C-int LTR MaLR 1 1580 0 1735 172 34 6 chrX 151109411 151109737 -11490193 + THE1A LTR MaLR 1 335 -20 225 227 136 0 chrX 151109851 151109939 -11489991 - L1ME4a LINE L1 -31 6090 5991 188 293 27 80 chrX 151110015 151110203 -11489727 - L2 LINE L2 -69 3244 3067 2226 104 0 0 chrX 151110909 151111215 -11488715 + AluSc SINE Alu 1 306 0 21 0 0 0 chrX 151111334 151111355 -11488575 + AT_rich Low_complexity Low_complexity 1 21 0 1368 225 21 50 chrX 151112123 151112501 -11487429 - MLT1A2 LTR MaLR 0 374 8 2105 133 24 29 chrX 151112501 151112876 -11487054 + THE1C LTR MaLR 1 373 -2 428 318 47 61 chrX 151112978 151113421 -11486509 - L1M4 LINE L1 -1087 5059 4623 426 130 0 0 chrX 151113440 151113509 -11486421 + MST-int LTR MaLR 92 160 -1491 26 50 0 0 chrX 151113518 151113558 -11486372 + AT_rich Low_complexity Low_complexity 1 40 0 30 45 0 0 chrX 151113723 151113767 -11486163 + AT_rich Low_complexity Low_complexity 1 44 0 561 318 15 30 chrX 151113963 151114300 -11485630 - HAL1b LINE L1 -809 539 208 477 311 43 11 chrX 151114859 151115055 -11484875 - MIR SINE MIR -50 212 15 204 204 0 0 chrX 151115768 151115812 -11484118 + (CA)n Simple_repeat Simple_repeat 1 44 0 1370 170 0 0 chrX 151116111 151116346 -11483584 + L1MA8 LINE L1 4705 4939 -1207 554 43 11 32 chrX 151116361 151116454 -11483476 + (TA)n Simple_repeat Simple_repeat 1 91 0 293 200 67 44 chrX 151116460 151116550 -11483380 + L1MA8 LINE L1 5783 5874 -417 488 113 25 0 chrX 151116551 151116631 -11483299 + MSTA LTR MaLR 347 428 0 1278 154 116 9 chrX 151116633 151116866 -11483064 + MSTA LTR MaLR 171 428 0 2357 193 8 6 chrX 151116866 151117348 -11482582 + L1MA6 LINE L1 5311 5793 -507 241 96 0 39 chrX 151117356 151117408 -11482522 + (TA)n Simple_repeat Simple_repeat 2 51 0 1107 210 29 17 chrX 151117410 151117697 -11482233 + L1MA6 LINE L1 5782 6071 -171 571 140 37 28 chrX 151117708 151117815 -11482115 + AluSg/x SINE Alu 186 293 -17 11525 193 6 14 chrX 151117827 151118719 -11481211 + L1P LINE L1 2612 3510 -2636 2251 165 33 14 chrX 151118719 151119138 -11480792 - MSTA LTR MaLR 0 428 2 11525 193 6 14 chrX 151119138 151120671 -11479259 + L1P LINE L1 3510 5016 -1130 296 336 8 42 chrX 151122714 151122833 -11477097 + L2 LINE L2 3182 3296 -17 1059 218 92 0 chrX 151122930 151123201 -11476729 + MLT1D LTR MaLR 1 296 -209 2133 230 89 48 chrX 151123245 151123858 -11476072 + Zaphod DNA AcHobo 70 656 -3375 1718 101 38 4 chrX 151123858 151124096 -11475834 + AluSq SINE Alu 1 246 -67 2133 230 89 48 chrX 151124096 151124708 -11475222 + Zaphod DNA AcHobo 656 3961 -70 755 95 0 95 chrX 151124708 151124834 -11475096 + AluSg SINE Alu 2 115 -195 236 119 0 0 chrX 151124834 151124876 -11475054 + Alu SINE Alu 258 299 -3 233 263 0 0 chrX 151124946 151125003 -11474927 - MIR SINE MIR -106 156 100 334 267 0 0 chrX 151125071 151125146 -11474784 + MER63 DNA MER1_type 676 750 -86 2085 136 41 22 chrX 151125201 151125569 -11474361 + THE1C LTR MaLR 1 375 0 1162 115 35 0 chrX 151125861 151126035 -11473895 - Tigger3(Golem) DNA MER2_type -54 2975 2796 234 189 0 0 chrX 151126525 151126562 -11473368 + LTR33A LTR ERVL 485 521 -2 244 324 34 28 chrX 151126707 151126886 -11473044 - L1ME LINE L1 -302 5819 5640 405 337 91 41 chrX 151126932 151127074 -11472856 - L2 LINE L2 -15 3257 3124 1543 123 0 18 chrX 151127074 151127134 -11472796 + AluSg/x SINE Alu 76 136 -176 2382 100 0 0 chrX 151127134 151127443 -11472487 + AluSg SINE Alu 1 309 -1 1543 123 0 18 chrX 151127443 151127601 -11472329 + AluSg/x SINE Alu 136 290 -22 405 337 91 41 chrX 151127601 151127951 -11471979 - L2 LINE L2 -148 3124 2732 432 370 11 11 chrX 151127951 151128135 -11471795 - L2 LINE L2 -904 2410 2227 322 361 12 47 chrX 151128185 151128354 -11471576 + MER5A DNA MER1_type 13 186 -3 191 316 31 51 chrX 151128375 151128473 -11471457 - MER5B DNA MER1_type 0 178 83 355 326 29 93 chrX 151128638 151128951 -11470979 + L2 LINE L2 2980 3272 0 280 300 20 80 chrX 151128947 151129097 -11470833 + MIR SINE MIR 56 196 -66 * 227 273 0 18 chrX 151129888 151129943 -11469987 + L2 LINE L2 3256 3309 -4 218 286 107 0 chrX 151130651 151130735 -11469195 + MIR SINE MIR 3 95 -167 1129 281 41 55 chrX 151131308 151131767 -11468163 + L2 LINE L2 2860 3312 -1 23 0 0 0 chrX 151133555 151133578 -11466352 + AT_rich Low_complexity Low_complexity 1 23 0 385 324 156 20 chrX 151134646 151134896 -11465034 + L3 LINE CR1 1291 1574 -3 1653 253 15 141 chrX 151134924 151135112 -11464818 + L2 LINE L2 1869 2079 -1235 2315 70 0 0 chrX 151135112 151135436 -11464494 - AluY SINE Alu 0 324 1 1653 253 15 141 chrX 151135436 151135542 -11464388 + L2 LINE L2 2079 2197 -1117 634 144 0 0 chrX 151135542 151135632 -11464298 - 5S rRNA rRNA -31 90 1 1653 253 15 141 chrX 151135632 151136050 -11463880 + L2 LINE L2 2197 2571 -743 1263 299 47 30 chrX 151136057 151136568 -11463362 + L2 LINE L2 2775 3297 -16 912 267 126 63 chrX 151136568 151137043 -11462887 - MLT1J LTR MaLR 0 511 7 41 21 0 0 chrX 151137173 151137221 -11462709 + AT_rich Low_complexity Low_complexity 1 48 0 245 238 36 24 chrX 151138263 151138347 -11461583 + MLT1K LTR MaLR 499 583 -5 438 94 0 0 chrX 151138696 151138760 -11461170 + (TG)n Simple_repeat Simple_repeat 1 64 0 42 48 0 0 chrX 151139616 151139679 -11460251 + AT_rich Low_complexity Low_complexity 1 63 0 1162 187 14 0 chrX 151139830 151140039 -11459891 + AluJb SINE Alu 1 212 -100 6298 83 13 16 chrX 151140039 151141517 -11458413 + L1PA13 LINE L1 4678 6157 -6 234 111 16 32 chrX 151141528 151141591 -11458339 + (TA)n Simple_repeat Simple_repeat 2 63 0 1185 157 52 4 chrX 151141591 151141820 -11458110 - L1M1 LINE L1 -7306 259 20 406 292 107 12 chrX 151142313 151142481 -11457449 + MIR SINE MIR 79 262 0 2708 193 77 0 chrX 151143574 151144144 -11455786 + MER90 LTR ERV1 1 614 0 32 0 0 0 chrX 151145811 151145843 -11454087 + AT_rich Low_complexity Low_complexity 1 32 0 2209 169 26 14 chrX 151146009 151146436 -11453494 - MSTB1 LTR MaLR 0 432 1 28 29 0 0 chrX 151146769 151146804 -11453126 + AT_rich Low_complexity Low_complexity 1 35 0 256 361 74 14 chrX 151146963 151147179 -11452751 - L2 LINE L2 -1294 2020 1792 1685 176 0 20 chrX 151147192 151147498 -11452432 + AluJb SINE Alu 1 300 -12 245 98 24 0 chrX 151147500 151147541 -11452389 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 249 108 0 0 chrX 151147547 151147584 -11452346 + (TG)n Simple_repeat Simple_repeat 2 38 0 1754 144 149 33 chrX 151147926 151148288 -11451642 - MER4A LTR ERV1 0 664 261 2417 76 0 7 chrX 151148301 151148605 -11451325 - AluY SINE Alu -9 302 1 933 131 75 6 chrX 151148632 151148792 -11451138 + MER41-int LTR ERV1 4380 4550 -1396 510 71 0 14 chrX 151148796 151148866 -11451064 - MER4A LTR ERV1 -595 69 1 10465 131 52 33 chrX 151148877 151149626 -11450304 - MER4A-int LTR ERV1 -5 6593 5860 7438 94 8 19 chrX 151149626 151150704 -11449226 + MER11C LTR ERVK 1 1067 -4 10465 131 52 33 chrX 151150704 151151591 -11448339 - MER4A-int LTR ERV1 -738 5860 4991 495 139 0 0 chrX 151151591 151151670 -11448260 - MADE1 DNA Mariner 0 80 2 10465 131 52 33 chrX 151151670 151152773 -11447157 - MER4A-int LTR ERV1 -1607 4991 3815 3211 145 108 45 chrX 151152784 151153061 -11446869 - MER4A-int LTR ERV1 -2924 3674 3416 2799 16 0 0 chrX 151153061 151153368 -11446562 + AluY SINE Alu 1 307 -4 3211 145 108 45 chrX 151153368 151153971 -11445959 - MER4A-int LTR ERV1 -3182 3416 2852 3804 142 30 47 chrX 151153971 151154674 -11445256 + LTR8 LTR ERV1 1 691 0 3211 145 108 45 chrX 151154674 151154849 -11445081 - MER4A-int LTR ERV1 -3746 2852 1560 3789 139 44 9 chrX 151154857 151155938 -11443992 - MER4A-int LTR ERV1 -5357 1401 198 849 230 81 9 chrX 151155957 151156179 -11443751 - LTR49-int LTR ERV1 -4119 2212 1975 1253 179 0 0 chrX 151156918 151157141 -11442789 - L1PBa LINE L1 -6640 223 1 615 307 15 68 chrX 151157238 151157502 -11442428 + MIR SINE MIR 11 260 -2 277 149 179 0 chrX 151157577 151157644 -11442286 - MER53 DNA DNA -2 187 109 443 180 33 41 chrX 151157684 151157806 -11442124 - MER53 DNA DNA -63 126 6 320 318 35 55 chrX 151157978 151158233 -11441697 - MIR SINE MIR -11 251 2 519 113 0 0 chrX 151161619 151161699 -11438231 + (TA)n Simple_repeat Simple_repeat 1 80 0 15616 215 31 8 chrX 151162926 151164478 -11435452 + L1PA16 LINE L1 1 1516 -5353 288 0 0 0 chrX 151164478 151164510 -11435420 + (TAA)n Simple_repeat Simple_repeat 1 32 0 15616 215 31 8 chrX 151164510 151169661 -11430269 + L1PA16 LINE L1 1516 6860 -9 537 237 110 9 chrX 151169868 151170050 -11429880 - MLT1L LTR MaLR -10 605 307 2768 206 48 8 chrX 151170141 151170744 -11429186 - MER50 LTR ERV1 0 734 108 580 255 13 7 chrX 151170756 151170909 -11429021 - MER50 LTR ERV1 -571 163 10 3078 269 57 16 chrX 151171066 151171898 -11428032 + L1MDa LINE L1 14 879 -5661 996 196 13 57 chrX 151171899 151172129 -11427801 + MER92B LTR ERV1 5 224 -412 4754 215 75 2 chrX 151172142 151173396 -11426534 - L1PBa LINE L1 -3789 3073 1722 723 166 22 0 chrX 151173390 151173529 -11426401 - L1 LINE L1 -1782 5385 5244 * 2880 208 19 21 chrX 151173529 151174197 -11425733 + L1 LINE L1 3558 4224 -1922 1340 229 26 25 chrX 151174195 151174696 -11425234 - L1 LINE L1 -4818 2280 1762 * 376 322 64 57 chrX 151174794 151175077 -11424853 - L1MC/D LINE L1 -2195 5613 5329 808 289 85 3 chrX 151175238 151175625 -11424305 - LTR52 LTR ERVL -2 419 1 2128 86 4 0 chrX 151176267 151176596 -11423334 + AluY SINE Alu 1 330 0 1892 97 19 88 chrX 151177032 151177352 -11422578 - AluSq SINE Alu -15 298 1 8143 31 0 0 chrX 151178410 151180150 -11419780 - L1PA3 LINE L1 -1 6154 4415 389 325 53 19 chrX 151180551 151180760 -11419170 - MER102b DNA MER1_type -26 315 100 3599 235 41 25 chrX 151180822 151181702 -11418228 - L1MB7 LINE L1 0 7603 6738 385 75 15 15 chrX 151181702 151181769 -11418161 + (TA)n Simple_repeat Simple_repeat 1 67 0 3599 235 41 25 chrX 151181769 151182664 -11417266 - L1MB7 LINE L1 -865 6738 5523 1693 175 19 82 chrX 151182664 151183076 -11416854 + MLT1B LTR MaLR 5 390 0 3599 235 41 25 chrX 151183076 151183146 -11416784 - L1MB7 LINE L1 -2080 5523 5456 1726 234 36 43 chrX 151183158 151183687 -11416243 - LTR55 LTR ERV -12 536 12 752 211 27 68 chrX 151183775 151184069 -11415861 - L1MB7 LINE L1 -2178 5387 5106 183 80 0 0 chrX 151184072 151184097 -11415833 + (T)n Simple_repeat Simple_repeat 1 25 0 324 70 0 0 chrX 151184232 151184275 -11415655 + (TG)n Simple_repeat Simple_repeat 1 43 0 1017 156 0 0 chrX 151185429 151185709 -11414221 + (CA)n Simple_repeat Simple_repeat 1 280 0 2273 237 38 119 chrX 151185807 151185976 -11413954 - L1MB7 LINE L1 -2450 5115 4934 1852 146 55 25 chrX 151185976 151186339 -11413591 - THE1C LTR MaLR 0 375 2 2273 237 38 119 chrX 151186339 151187014 -11412916 - L1MB7 LINE L1 -2631 4934 4206 189 0 0 0 chrX 151187014 151187035 -11412895 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2273 237 38 119 chrX 151187035 151187168 -11412762 - L1MB7 LINE L1 -3359 4206 4064 1591 202 0 20 chrX 151187168 151187470 -11412460 - AluJo SINE Alu -16 296 1 2273 237 38 119 chrX 151187470 151188617 -11411313 - L1MB7 LINE L1 -3501 4064 3193 30 45 0 0 chrX 151188617 151188661 -11411269 + AT_rich Low_complexity Low_complexity 1 44 0 30 45 0 0 chrX 151188880 151188924 -11411006 + AT_rich Low_complexity Low_complexity 1 44 0 5107 144 25 1 chrX 151188928 151189794 -11410136 - L1MA2 LINE L1 -1 6303 5417 2572 206 14 10 chrX 151189794 151190303 -11409627 - L1MB7 LINE L1 -7036 529 19 463 277 21 14 chrX 151190307 151190448 -11409482 - L1MC1 LINE L1 -6 6327 6186 442 249 49 4 chrX 151190585 151190726 -11409204 - L1M4b LINE L1 -4546 2492 2269 2324 94 34 55 chrX 151190752 151191135 -11408795 - THE1C LTR MaLR 0 375 1 3766 208 40 21 chrX 151191136 151192069 -11407861 - L1PB4 LINE L1 -25 6833 5843 216 0 0 0 chrX 151192069 151192093 -11407837 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3766 208 40 21 chrX 151192093 151192755 -11407175 - L1PB4 LINE L1 -1015 5843 5195 3206 231 27 19 chrX 151192759 151193598 -11406332 - L1PB4 LINE L1 -1918 4930 4085 1219 230 38 24 chrX 151193587 151194253 -11405677 - L1PB4 LINE L1 -3635 3213 2531 * 1898 234 21 43 chrX 151194248 151194905 -11405025 - L1PB4 LINE L1 -4569 2280 1638 487 281 5 42 chrX 151194905 151195122 -11404808 - L1M4b LINE L1 -4731 2228 2020 343 212 61 0 chrX 151195133 151195232 -11404698 - L1MA8 LINE L1 -3 6288 6184 1277 185 14 35 chrX 151195235 151195522 -11404408 + L1MA7 LINE L1 5773 6053 -238 2993 281 54 45 chrX 151195543 151196384 -11403546 - L1M4b LINE L1 -4834 2021 1162 1935 139 77 14 chrX 151196384 151196737 -11403193 - THE1C LTR MaLR 0 375 1 2993 281 54 45 chrX 151196737 151197481 -11402449 - L1M4b LINE L1 -5693 1162 426 6361 199 34 14 chrX 151197730 151198989 -11400941 + L1MA2 LINE L1 6 1290 -6275 3650 216 21 8 chrX 151198996 151199096 -11400834 + L1MA2 LINE L1 3287 3384 -4181 333 0 0 0 chrX 151199096 151199133 -11400797 + (CA)n Simple_repeat Simple_repeat 2 38 0 3650 216 21 8 chrX 151199133 151200192 -11399738 + L1MA2 LINE L1 3384 4462 -3103 2769 88 0 0 chrX 151200194 151200547 -11399383 + THE1A LTR MaLR 1 353 -2 8794 118 2 18 chrX 151200549 151201047 -11398883 + THE1A-int LTR MaLR 1 505 -1075 2245 113 0 13 chrX 151201047 151201358 -11398572 + AluSc SINE Alu 3 309 0 8794 118 2 18 chrX 151201358 151202454 -11397476 + THE1A-int LTR MaLR 505 1580 0 2815 73 0 0 chrX 151202454 151202809 -11397121 + THE1A LTR MaLR 1 355 0 10500 172 19 9 chrX 151202814 151203369 -11396561 + L1MA2 LINE L1 4465 5013 -2710 2271 99 3 0 chrX 151203369 151203661 -11396269 + AluSp SINE Alu 1 293 -20 10500 172 19 9 chrX 151203661 151206331 -11393599 + L1MA2 LINE L1 5013 7723 0 262 347 0 0 chrX 151208522 151208594 -11391336 + L2 LINE L2 3201 3272 0 23 0 0 0 chrX 151208733 151208756 -11391174 + AT_rich Low_complexity Low_complexity 1 23 0 748 300 177 42 chrX 151209282 151209689 -11390241 + LTR16B LTR ERVL 1 462 -2 2280 349 31 18 chrX 151209713 151210560 -11389370 + HERV16 LTR ERVL 21 890 -4106 1513 201 24 46 chrX 151210560 151210933 -11388997 - MLT1A1 LTR MaLR 0 365 1 2280 349 31 18 chrX 151210933 151211296 -11388634 + HERV16 LTR ERVL 890 1247 -3749 1146 322 65 25 chrX 151211660 151212232 -11387698 + HERV16 LTR ERVL 1876 2470 -2526 799 289 45 91 chrX 151212260 151212490 -11387440 + HERV16 LTR ERVL 3237 3476 -1520 1768 203 3 0 chrX 151212490 151212801 -11387129 + AluJo SINE Alu 1 312 0 799 289 45 91 chrX 151212801 151213283 -11386647 + HERV16 LTR ERVL 3476 3916 -1080 1406 275 92 18 chrX 151213286 151214009 -11385921 + L1MCc LINE L1 1137 1806 -5316 306 50 0 0 chrX 151214009 151214049 -11385881 + (CA)n Simple_repeat Simple_repeat 2 41 0 1406 275 92 18 chrX 151214049 151214711 -11385219 + L1MCc LINE L1 1806 2835 -4287 34 79 0 0 chrX 151214715 151214791 -11385139 + AT_rich Low_complexity Low_complexity 1 76 0 383 255 59 44 chrX 151214791 151214882 -11385048 + L1MCc LINE L1 2819 2907 -4215 2103 132 39 36 chrX 151214882 151215245 -11384685 - THE1B LTR MaLR 0 364 1 383 255 59 44 chrX 151215245 151215357 -11384573 + L1MCc LINE L1 2907 3025 -4097 1719 174 17 0 chrX 151215359 151215658 -11384272 + L1PB3 LINE L1 5844 6147 -7 29 0 0 0 chrX 151215658 151215687 -11384243 + AT_rich Low_complexity Low_complexity 1 29 0 2639 280 53 23 chrX 151215712 151216895 -11383035 + L1MCc LINE L1 2978 4196 -2745 402 259 31 56 chrX 151216901 151217063 -11382867 + HERV16 LTR ERVL 4019 4176 -820 300 317 223 31 chrX 151217224 151217678 -11382252 + HERV16 LTR ERVL 4720 5260 -504 995 317 46 40 chrX 151217904 151218358 -11381572 + LTR16B LTR ERVL 1 457 -7 2215 218 66 24 chrX 151218396 151218861 -11381069 + MLT2B1 LTR ERVL 1 490 -30 444 65 39 0 chrX 151218861 151218938 -11380992 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 2215 218 66 24 chrX 151218938 151218971 -11380959 + MLT2B1 LTR ERVL 490 520 0 250 262 33 0 chrX 151218975 151219036 -11380894 + MIR SINE MIR 184 246 -16 509 366 29 80 chrX 151219048 151219398 -11380532 - L2 LINE L2 -6 3266 2935 225 86 57 0 chrX 151219752 151219787 -11380143 - L1M4 LINE L1 -2080 4066 4030 * 1074 284 45 8 chrX 151219780 151220269 -11379661 - L1M4 LINE L1 -3273 2873 2367 34 24 0 0 chrX 151220283 151220324 -11379606 + AT_rich Low_complexity Low_complexity 1 41 0 1880 154 40 27 chrX 151220359 151220729 -11379201 + THE1C LTR MaLR 1 375 0 7008 140 12 8 chrX 151220740 151221822 -11378108 + THE1C-int LTR MaLR 495 1580 0 2129 152 13 19 chrX 151221822 151222197 -11377733 + THE1C LTR MaLR 1 373 -2 13908 184 19 10 chrX 151222199 151223632 -11376298 - L1MA2 LINE L1 -41 7682 6264 2482 60 23 0 chrX 151223632 151223933 -11375997 - AluY SINE Alu -3 308 1 13908 184 19 10 chrX 151223933 151227137 -11372793 - L1MA2 LINE L1 -1459 6264 3001 1411 270 73 16 chrX 151227161 151228034 -11371896 - L1MDa LINE L1 -3631 2909 1989 2326 224 46 52 chrX 151228039 151228619 -11371311 + L1MDa LINE L1 1799 2389 -4332 263 49 24 0 chrX 151228619 151228660 -11371270 + (TA)n Simple_repeat Simple_repeat 1 42 0 2326 224 46 52 chrX 151228660 151229111 -11370819 + L1MD2 LINE L1 2389 2841 -3880 556 214 73 24 chrX 151229128 151229334 -11370596 + L1MD2 LINE L1 2896 3111 -3429 1574 249 105 63 chrX 151229334 151230154 -11369776 + L1MD2 LINE L1 4686 5559 -981 1642 158 17 27 chrX 151230154 151230446 -11369484 + AluJo SINE Alu 9 297 -15 1574 249 105 63 chrX 151230446 151230664 -11369266 + L1MD2 LINE L1 5559 5767 -773 801 183 89 6 chrX 151230664 151230833 -11369097 - THE1C LTR MaLR -2 373 191 444 72 87 29 chrX 151230834 151230903 -11369027 - THE1C LTR MaLR -302 73 1 2017 197 56 23 chrX 151230903 151231420 -11368510 + L1MD2 LINE L1 5761 6294 -459 401 247 0 0 chrX 151231446 151231523 -11368407 + MER21B LTR ERV1 20 96 -767 419 230 65 22 chrX 151231568 151231707 -11368223 + MER21B LTR ERV1 104 248 -615 1079 238 52 34 chrX 151231756 151232084 -11367846 + MER21B LTR ERV1 381 714 -149 852 210 47 37 chrX 151232118 151232519 -11367411 + L1MD2 LINE L1 6297 6753 0 372 353 101 39 chrX 151232520 151232936 -11366994 + L2 LINE L2 2450 2891 -423 212 375 20 20 chrX 151233610 151233762 -11366168 - L2 LINE L2 -277 2995 2844 1465 213 35 38 chrX 151235257 151235623 -11364307 - MLT1A1 LTR MaLR 0 365 1 2082 82 44 3 chrX 151235969 151236263 -11363667 + AluY SINE Alu 1 306 -5 330 123 0 0 chrX 151236320 151236377 -11363553 + (T)n Simple_repeat Simple_repeat 1 57 0 4941 175 41 17 chrX 151236460 151237652 -11362278 - L1MA9 LINE L1 -31 6281 5045 1496 188 32 99 chrX 151238625 151239088 -11360842 - MSTB1 LTR MaLR 0 432 1 21 0 0 0 chrX 151240473 151240494 -11359436 + AT_rich Low_complexity Low_complexity 1 21 0 548 261 54 20 chrX 151240683 151240906 -11359024 - MER110A LTR ERV1 0 468 258 5803 247 86 12 chrX 151241080 151242471 -11357459 + L1M4 LINE L1 8 1552 -5303 2199 239 76 38 chrX 151242471 151242755 -11357175 - MER82 DNA MER2_type -1 652 380 2111 134 0 13 chrX 151242755 151243068 -11356862 + AluSg SINE Alu 1 309 -1 2199 239 76 38 chrX 151243068 151243411 -11356519 - MER82 DNA MER2_type -273 380 1 5803 247 86 12 chrX 151243411 151243805 -11356125 + L1M4 LINE L1 1552 1916 -4939 619 234 75 11 chrX 151243805 151243993 -11355937 + L1M4 LINE L1 3344 3543 -3414 1785 135 4 4 chrX 151243996 151244256 -11355674 + AluSx SINE Alu 37 296 -16 967 114 0 0 chrX 151244273 151244404 -11355526 - AluSq/x SINE Alu -181 131 1 2894 236 22 20 chrX 151244405 151245266 -11354664 + L1M4 LINE L1 5156 6018 -939 1256 159 0 5 chrX 151246786 151247047 -11352883 + AluJb SINE Alu 114 373 0 2503 50 0 0 chrX 151247421 151247719 -11352211 + AluY SINE Alu 1 298 -13 32 26 0 0 chrX 151247874 151247913 -11352017 + AT_rich Low_complexity Low_complexity 1 39 0 666 190 76 0 chrX 151247980 151248138 -11351792 + L1M4 LINE L1 6018 6187 -770 265 200 256 0 chrX 151248136 151248226 -11351704 - L1MC3 LINE L1 -1828 5957 5845 * 1172 246 65 50 chrX 151248232 151248675 -11351255 - MLT1D LTR MaLR -55 450 1 533 201 60 7 chrX 151248677 151248842 -11351088 - L1MC3 LINE L1 -347 5819 5640 2059 218 138 50 chrX 151248863 151249538 -11350392 - Charlie1a DNA MER1_type -721 734 1 204 290 58 0 chrX 151249796 151249865 -11350065 - MIR SINE MIR -93 169 97 2195 180 57 2 chrX 151249878 151250284 -11349646 - MSTA LTR MaLR 0 428 1 9080 169 9 23 chrX 151250284 151251957 -11347973 - MSTA-int LTR MaLR 0 1651 2 2102 168 63 24 chrX 151251959 151252370 -11347560 - MSTA LTR MaLR -1 427 1 194 306 24 47 chrX 151253361 151253446 -11346484 + MIR3 SINE MIR 103 185 -23 280 285 77 23 chrX 151255289 151255419 -11344511 + LTR33 LTR ERVL 116 252 -269 371 254 169 8 chrX 151255463 151255581 -11344349 + LTR33 LTR ERVL 327 463 -58 817 275 128 52 chrX 151256171 151256578 -11343352 - L2 LINE L2 0 3313 2876 27 0 0 0 chrX 151256650 151256677 -11343253 + AT_rich Low_complexity Low_complexity 1 27 0 4813 125 2 26 chrX 151256881 151257672 -11342258 - L1PA15 LINE L1 -5 6160 5389 284 243 36 108 chrX 151257699 151257810 -11342120 + L2 LINE L2 3207 3309 -4 2054 150 142 5 chrX 151257887 151258261 -11341669 - MSTA LTR MaLR 0 428 4 8359 187 17 42 chrX 151258264 151259897 -11340033 - MSTA-int LTR MaLR 0 1651 61 2003 135 120 28 chrX 151259897 151260289 -11339641 - MSTA LTR MaLR 0 428 1 8359 187 17 42 chrX 151260289 151260349 -11339581 - MSTA-int LTR MaLR -1590 61 1 1957 150 135 5 chrX 151260349 151260728 -11339202 - MSTA LTR MaLR 0 428 1 2577 64 35 3 chrX 151262875 151263217 -11336713 + THE1A LTR MaLR 3 355 0 21 0 0 0 chrX 151263350 151263371 -11336559 + AT_rich Low_complexity Low_complexity 1 21 0 2030 77 0 0 chrX 151263899 151264160 -11335770 + L1PA8 LINE L1 5909 6169 -3 1651 194 25 0 chrX 151264191 151264469 -11335461 - AluJo SINE Alu -27 285 1 233 75 9 94 chrX 151264527 151264633 -11335297 + (TTTTA)n Simple_repeat Simple_repeat 2 98 0 265 306 102 15 chrX 151265436 151265642 -11334288 - L1ME1 LINE L1 -247 5919 5696 21 0 0 0 chrX 151265750 151265771 -11334159 + AT_rich Low_complexity Low_complexity 1 21 0 697 276 98 29 chrX 151265786 151266398 -11333532 - L1MCa LINE L1 -4604 2003 1114 204 273 91 0 chrX 151266909 151266986 -11332944 + MIR SINE MIR 110 193 -69 267 187 40 0 chrX 151266986 151267061 -11332869 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 1849 265 53 33 chrX 151267138 151267275 -11332655 - MLT1E LTR MaLR 0 593 460 2176 95 3 0 chrX 151267275 151267609 -11332321 - AluSp SINE Alu 0 335 1 1849 265 53 33 chrX 151267609 151268051 -11331879 - MLT1E LTR MaLR -133 460 1 1382 250 0 0 chrX 151269145 151269445 -11330485 + AluJb SINE Alu 1 300 -12 201 349 64 35 chrX 151269593 151269765 -11330165 - MIR SINE MIR -37 225 49 244 322 152 18 chrX 151269878 151270049 -11329881 + MIR SINE MIR 5 198 -64 956 198 33 24 chrX 151273227 151273439 -11326491 - MER20 DNA MER1_type -5 214 1 250 368 11 11 chrX 151273439 151273534 -11326396 - MIR3 SINE MIR -111 97 3 185 159 23 0 chrX 151273572 151273616 -11326314 + GA-rich Low_complexity Low_complexity 2 46 0 22 0 0 0 chrX 151274087 151274109 -11325821 + AT_rich Low_complexity Low_complexity 1 22 0 995 189 70 17 chrX 151274114 151274378 -11325552 - L1MA8 LINE L1 0 6312 6029 271 122 0 0 chrX 151274379 151274420 -11325510 - L1MA8 LINE L1 -462 5829 5789 3726 315 130 18 chrX 151274420 151274487 -11325443 - L2 LINE L2 -817 2497 2439 2221 164 44 2 chrX 151274487 151274896 -11325034 - MSTA LTR MaLR -2 426 1 3726 315 130 18 chrX 151274896 151276626 -11323304 - L2 LINE L2 -875 2439 498 449 196 36 9 chrX 151277073 151277185 -11322745 + MER53 DNA DNA 22 136 -53 445 128 13 26 chrX 151279518 151279596 -11320334 - AluJ/FLAM SINE Alu -225 87 11 261 248 48 7 chrX 151279613 151279758 -11320172 - L1M4 LINE L1 -2875 3973 3823 514 303 98 33 chrX 151279775 151280673 -11319257 - L1M4 LINE L1 -3080 3768 2813 284 328 15 22 chrX 151281109 151281243 -11318687 + MLT1J LTR MaLR 286 418 -93 4408 181 11 7 chrX 151281595 151282504 -11317426 + L1M2 LINE L1 1628 2540 -4309 261 61 0 0 chrX 151282504 151282537 -11317393 - LTR10C LTR ERV1 0 591 559 * 374 65 0 0 chrX 151282532 151282578 -11317352 + LTR10C LTR ERV1 546 591 0 402 193 34 0 chrX 151282578 151282666 -11317264 - L1M4 LINE L1 -4309 2540 2450 1777 106 0 0 chrX 151282667 151282904 -11317026 + AluSg/x SINE Alu 76 312 0 4689 38 5 0 chrX 151282910 151283468 -11316462 - LTR10C LTR ERV1 -30 561 1 1729 221 10 16 chrX 151283469 151284194 -11315736 + L1M2 LINE L1 2538 3257 -3591 1687 135 26 33 chrX 151284194 151284542 -11315388 - MER4A LTR ERV1 0 664 261 617 152 0 10 chrX 151284542 151284641 -11315289 - MER4A LTR ERV1 -566 98 1 7057 218 21 38 chrX 151284643 151285212 -11314718 + L1M2 LINE L1 3258 3835 -3013 1858 146 0 57 chrX 151285212 151285528 -11314402 + AluSx SINE Alu 1 298 -14 7057 218 21 38 chrX 151285528 151285741 -11314189 + L1M2 LINE L1 3835 4050 -2798 2197 126 3 0 chrX 151285741 151286051 -11313879 + AluSq SINE Alu 1 311 -2 7057 218 21 38 chrX 151286051 151287336 -11312594 + L1M2 LINE L1 4050 5290 -1558 1541 70 143 70 chrX 151287336 151287609 -11312321 + LTR66 LTR ERVL 318 610 0 1309 153 8 8 chrX 151287609 151287863 -11312067 + L1M2 LINE L1 5287 5540 -1308 * 6028 227 32 20 chrX 151287857 151290945 -11308985 - L1PBa LINE L1 -4643 2220 37 237 33 0 0 chrX 151291006 151291036 -11308894 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1767 256 52 21 chrX 151292373 151292893 -11307037 + MLT1F LTR MaLR 7 542 0 278 181 0 48 chrX 151292951 151293034 -11306896 + (TGAA)n Simple_repeat Simple_repeat 3 81 0 2017 127 7 7 chrX 151293453 151293752 -11306178 - AluSx SINE Alu -13 299 1 1935 140 159 8 chrX 151294461 151294833 -11305097 + MSTA LTR MaLR 1 428 0 743 302 91 29 chrX 151294900 151295384 -11304546 - L1ME3 LINE L1 -283 5879 5366 351 270 50 40 chrX 151295423 151295623 -11304307 - L1ME3 LINE L1 -912 5234 5033 509 165 21 10 chrX 151295623 151295720 -11304210 + MER4A LTR ERV1 1 98 -566 1953 120 6 19 chrX 151295720 151296070 -11303860 + MER4A LTR ERV1 261 664 0 426 331 70 41 chrX 151296070 151296439 -11303491 - L1ME3 LINE L1 -1110 5036 4657 1103 199 38 116 chrX 151296821 151296888 -11303042 + MLT1A1 LTR MaLR 1 72 -293 961 96 39 51 chrX 151296888 151297066 -11302864 + L1PA13 LINE L1 5987 6162 -1 1103 199 38 116 chrX 151297066 151297082 -11302848 + MLT1A1 LTR MaLR 72 88 -277 327 25 0 0 chrX 151297082 151297122 -11302808 + (CA)n Simple_repeat Simple_repeat 2 41 0 1103 199 38 116 chrX 151297122 151297433 -11302497 + MLT1A1 LTR MaLR 88 365 0 301 274 78 39 chrX 151297539 151297794 -11302136 - L1ME3 LINE L1 -1504 4642 4378 225 0 0 0 chrX 151297819 151297844 -11302086 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 539 278 14 7 chrX 151297874 151298018 -11301912 + L2 LINE L2 3169 3313 0 360 290 98 72 chrX 151298077 151298698 -11301232 - L1ME3 LINE L1 -1885 4261 3625 531 304 159 5 chrX 151298887 151299107 -11300823 + MIR SINE MIR 3 256 -6 205 263 25 25 chrX 151299107 151299187 -11300743 + CT-rich Low_complexity Low_complexity 4 83 0 1620 267 44 32 chrX 151299676 151300353 -11299577 - L1MC4a LINE L1 -1803 5988 5304 234 299 133 35 chrX 151300509 151301060 -11298870 - L1MC4a LINE L1 -1010 5119 4515 243 88 0 0 chrX 151301527 151301561 -11298369 + (TG)n Simple_repeat Simple_repeat 1 34 0 361 316 46 68 chrX 151301568 151301805 -11298125 - HAL1 LINE L1 -864 1643 1412 262 223 95 54 chrX 151301916 151302064 -11297866 - L1MC4a LINE L1 -4966 1153 1000 11654 170 12 22 chrX 151302091 151305617 -11294313 - L1MA2 LINE L1 0 6304 2815 249 279 15 0 chrX 151355683 151355751 -11244179 + MLT1E3 LTR MaLR 1 69 -585 1189 253 29 37 chrX 151355843 151356267 -11243663 + MLT1E3 LTR MaLR 230 624 0 17544 134 49 9 chrX 151357123 151359885 -11240045 - Tigger3(Golem) DNA MER2_type 0 3029 381 5004 98 35 17 chrX 151359885 151359956 -11239974 - LTR19C LTR ERV1 0 779 711 369 43 0 0 chrX 151359956 151360003 -11239927 + (CA)n Simple_repeat Simple_repeat 2 48 0 5004 98 35 17 chrX 151360003 151360215 -11239715 - LTR19C LTR ERV1 -68 711 504 335 23 23 0 chrX 151360215 151360259 -11239671 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 5004 98 35 17 chrX 151360259 151360739 -11239191 - LTR19C LTR ERV1 -275 504 1 17544 134 49 9 chrX 151360739 151360880 -11239050 - Tigger3(Golem) DNA MER2_type -2648 381 8 616 255 38 0 chrX 151360889 151361046 -11238884 + MER58B DNA MER1_type 179 341 0 253 331 29 7 chrX 151362142 151362281 -11237649 - L1ME LINE L1 -638 5526 5385 2397 84 7 0 chrX 151362282 151362590 -11237340 - AluSp SINE Alu -3 310 1 6643 29 0 0 chrX 151362660 151363482 -11236448 + L1P LINE L1 2634 3455 -2691 28 0 0 0 chrX 151363482 151363510 -11236420 + AT_rich Low_complexity Low_complexity 1 28 0 11588 33 0 0 chrX 151365515 151366907 -11233023 + L1P LINE L1 3444 4835 -1311 7626 20 0 8 chrX 151367094 151368320 -11231610 - L1PA3 LINE L1 -3 6152 4932 570 291 69 45 chrX 151368504 151369057 -11230873 - L1ME LINE L1 -1304 4842 4277 387 0 0 0 chrX 151369140 151369183 -11230747 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1147 195 84 17 chrX 151369362 151369649 -11230281 - MLT1D LTR MaLR 0 505 200 548 216 3 92 chrX 151369736 151369931 -11229999 - MLT1E2 LTR MaLR -322 183 1 324 0 0 0 chrX 151370170 151370206 -11229724 + (TG)n Simple_repeat Simple_repeat 1 36 0 309 287 86 38 chrX 151370206 151370415 -11229515 - L1ME LINE L1 -2384 3762 3544 25 0 0 0 chrX 151370475 151370500 -11229430 + AT_rich Low_complexity Low_complexity 1 25 0 305 281 70 15 chrX 151370540 151370871 -11229059 - L1ME LINE L1 -2882 3264 2916 1247 256 73 25 chrX 151371469 151372050 -11227880 + MLT1E3 LTR MaLR 1 624 0 2735 102 74 12 chrX 151372300 151372863 -11227067 + MER4E LTR ERV1 1 771 -8 21 36 0 0 chrX 151372949 151372977 -11226953 + AT_rich Low_complexity Low_complexity 1 28 0 737 219 0 30 chrX 151372977 151373146 -11226784 - L1PB4 LINE L1 -33 6123 5960 532 262 79 25 chrX 151373158 151373360 -11226570 - MER83B LTR ERV1 -13 365 153 680 167 0 2 chrX 151373601 151373726 -11226204 - L1PB4 LINE L1 -209 5947 5825 2362 77 0 49 chrX 151373832 151374159 -11225771 - AluY SINE Alu 0 311 1 266 396 47 10 chrX 151374283 151374475 -11225455 - MIR SINE MIR -19 243 45 1857 114 13 33 chrX 151374580 151374887 -11225043 + Tigger2a DNA MER2_type 1 301 -133 2201 197 105 78 chrX 151374895 151375656 -11224274 + LTR1B LTR ERV1 3 784 -42 507 237 68 0 chrX 151375705 151375823 -11224107 + Tigger2a DNA MER2_type 319 444 0 260 371 144 27 chrX 151376117 151376629 -11223301 + L2 LINE L2 294 865 -2449 620 260 101 64 chrX 151376779 151377137 -11222793 + MLT1H1 LTR MaLR 185 555 0 260 130 37 0 chrX 151377481 151377535 -11222395 + CT-rich Low_complexity Low_complexity 4 59 0 193 250 0 23 chrX 151377565 151377609 -11222321 - L2 LINE L2 -20 3252 3210 3536 249 93 18 chrX 151377830 151379364 -11220566 + L1MB8 LINE L1 3016 4664 -1482 1284 234 99 4 chrX 151379371 151379768 -11220162 - MLT1D LTR MaLR 0 505 3 3762 218 30 20 chrX 151379771 151381262 -11218668 + L1MB8 LINE L1 4662 6164 -14 24 0 0 0 chrX 151381297 151381321 -11218609 + AT_rich Low_complexity Low_complexity 1 24 0 2168 132 0 0 chrX 151381696 151382000 -11217930 + AluSx SINE Alu 1 304 -8 1331 174 38 13 chrX 151383057 151383373 -11216557 - MER33 DNA MER1_type 0 324 1 23 0 0 0 chrX 151383656 151383679 -11216251 + AT_rich Low_complexity Low_complexity 1 23 0 5966 85 37 104 chrX 151384173 151385352 -11214578 + MER11C LTR ERVK 1 1071 0 1704 132 0 0 chrX 151385481 151385724 -11214206 - AluSg1 SINE Alu -66 243 1 1715 142 56 51 chrX 151385776 151386149 -11213781 + THE1C LTR MaLR 1 375 0 5867 197 25 3 chrX 151386149 151387286 -11212644 + THE1C-int LTR MaLR 1 1162 -489 2586 101 14 6 chrX 151387291 151387647 -11212283 + THE1B LTR MaLR 6 364 0 3052 128 27 12 chrX 151387647 151388131 -11211799 + THE1C-int LTR MaLR 1090 1580 0 1649 176 43 40 chrX 151388131 151388505 -11211425 + THE1C LTR MaLR 1 375 0 214 336 97 0 chrX 151388547 151388660 -11211270 + L3 LINE CR1 412 535 -1042 2268 111 0 0 chrX 151388701 151388998 -11210932 - AluSx SINE Alu -15 297 1 894 45 0 0 chrX 151390409 151390520 -11209410 + (TA)n Simple_repeat Simple_repeat 2 112 0 198 0 0 0 chrX 151390519 151390541 -11209389 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 1359 233 42 0 chrX 151390755 151391042 -11208888 + AluSg SINE Alu 1 299 -11 1769 289 37 8 chrX 151391337 151391852 -11208078 + L2 LINE L2 2268 2797 -517 969 153 11 23 chrX 151391856 151392033 -11207897 - L1PA15 LINE L1 -56 6109 5935 26 30 0 0 chrX 151393389 151393422 -11206508 + AT_rich Low_complexity Low_complexity 1 33 0 1785 138 29 0 chrX 151393644 151393955 -11205975 + L1P4 LINE L1 5294 5613 -552 4044 144 25 6 chrX 151393982 151394668 -11205262 + L1PA13 LINE L1 5459 6157 -6 485 259 74 15 chrX 151395677 151395812 -11204118 + MLT1J1 LTR MaLR 6 148 -298 2046 176 71 27 chrX 151395812 151396250 -11203680 - LTR2B LTR ERV1 0 490 34 394 250 48 90 chrX 151396347 151396470 -11203460 + MLT1J1 LTR MaLR 238 352 -94 1946 134 40 35 chrX 151396470 151396843 -11203087 - THE1C LTR MaLR 0 375 1 394 250 48 90 chrX 151396843 151396907 -11203023 + MLT1J1 LTR MaLR 352 417 -29 717 218 26 103 chrX 151397461 151397695 -11202235 + MER58A DNA MER1_type 7 222 -2 482 267 99 35 chrX 151397850 151398052 -11201878 + L3 LINE CR1 1083 1297 -280 272 364 15 23 chrX 151398205 151398337 -11201593 + L2 LINE L2 1810 1940 -1374 204 315 119 49 chrX 151398651 151398794 -11201136 - L2 LINE L2 0 3313 3161 512 343 43 45 chrX 151398834 151399307 -11200623 - L2 LINE L2 -136 3177 2711 1055 167 11 0 chrX 151399390 151399570 -11200360 + AluJb SINE Alu 131 312 0 307 343 18 41 chrX 151399738 151399907 -11200023 + MIR SINE MIR 19 183 -79 513 0 0 0 chrX 151401279 151401336 -11198594 + (TA)n Simple_repeat Simple_repeat 2 58 0 869 360 30 13 chrX 151401538 151401932 -11197998 - LTR16A LTR ERVL -2 448 48 214 186 70 0 chrX 151402042 151402085 -11197845 + L2 LINE L2 3268 3313 0 766 319 70 0 chrX 151402337 151402607 -11197323 - LTR33 LTR ERVL -81 440 152 425 308 48 0 chrX 151402844 151402990 -11196940 + Charlie1 DNA MER1_type 1 153 -2608 814 251 79 9 chrX 151402998 151403328 -11196602 + Charlie1 DNA MER1_type 2409 2761 0 633 225 136 79 chrX 151403526 151403930 -11196000 - MSTC LTR MaLR 0 428 2 195 162 0 0 chrX 151404405 151404442 -11195488 + (TAA)n Simple_repeat Simple_repeat 1 37 0 264 185 62 15 chrX 151404442 151404507 -11195423 + GA-rich Low_complexity Low_complexity 2 69 0 861 274 64 25 chrX 151404955 151405312 -11194618 + L1MDa LINE L1 34 404 -6136 5814 143 21 32 chrX 151406218 151407301 -11192629 + MER11C LTR ERVK 1 1071 0 1801 214 71 6 chrX 151407368 151407844 -11192086 + L1MDa LINE L1 997 1503 -5040 995 238 95 62 chrX 151407896 151408764 -11191166 + L1MDa LINE L1 2120 3049 -3491 315 0 0 0 chrX 151408764 151408799 -11191131 + (CA)n Simple_repeat Simple_repeat 2 36 0 995 238 95 62 chrX 151408799 151408866 -11191064 + L1MDa LINE L1 3049 3112 -3428 1573 196 55 63 chrX 151408876 151409370 -11190560 + MLT1D LTR MaLR 15 504 -1 469 268 24 12 chrX 151409371 151409535 -11190395 + L1MDa LINE L1 3108 3273 -3267 * 539 202 0 62 chrX 151409529 151409658 -11190272 + L1PB4 LINE L1 6028 6148 -8 2185 256 63 40 chrX 151409675 151410669 -11189261 + L1MDa LINE L1 3258 4281 -2259 5785 77 1 0 chrX 151410669 151411427 -11188503 + L1PA8 LINE L1 5413 6171 -1 2185 256 63 40 chrX 151411427 151411533 -11188397 + L1MDa LINE L1 4281 4383 -2157 630 209 80 79 chrX 151411543 151411874 -11188056 - MLT1E3 LTR MaLR -327 299 1 334 260 60 10 chrX 151411968 151412068 -11187862 - L2 LINE L2 -5 3308 3204 276 296 0 0 chrX 151412583 151412654 -11187276 + CT-rich Low_complexity Low_complexity 3 73 0 226 192 8 217 chrX 151413233 151413353 -11186577 + L2 LINE L2 3014 3108 -164 2111 163 25 3 chrX 151413555 151413912 -11186018 - MLT1A1 LTR MaLR 0 365 1 215 374 82 15 chrX 151413988 151414183 -11185747 + L2 LINE L2 2004 2211 -1103 4553 338 54 20 chrX 151414183 151416687 -11183243 + ERVL LTR ERVL 2685 5272 -492 882 297 81 53 chrX 151416687 151417539 -11182391 + L2 LINE L2 2435 3309 -4 2185 105 3 3 chrX 151417727 151418023 -11181907 - AluSg SINE Alu -14 296 1 325 306 110 35 chrX 151418263 151418436 -11181494 - L1ME4a LINE L1 -216 5905 5720 265 329 41 44 chrX 151418474 151418790 -11181140 - L1ME4a LINE L1 -402 5719 5405 21 36 0 0 chrX 151418898 151418926 -11181004 + AT_rich Low_complexity Low_complexity 1 28 0 195 129 0 0 chrX 151419161 151419192 -11180738 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 593 216 33 7 chrX 151419799 151419952 -11179978 + MER96B DNA MER1_type? 256 412 -5 467 263 34 62 chrX 151420365 151420424 -11179506 - MER5B DNA MER1_type -4 174 115 1947 119 44 10 chrX 151420424 151420717 -11179213 + AluSx SINE Alu 1 303 -9 467 263 34 62 chrX 151420717 151420836 -11179094 - MER5B DNA MER1_type -63 115 1 355 354 21 0 chrX 151422268 151422412 -11177518 + MIR3 SINE MIR 61 207 -1 415 326 120 6 chrX 151423064 151423239 -11176691 - MIR SINE MIR -32 230 36 3180 60 12 0 chrX 151423528 151423927 -11176003 + MLT2A1 LTR ERVL 1 404 -40 3707 281 129 29 chrX 151423954 151425299 -11174631 + L2 LINE L2 178 1710 -1604 2260 62 45 10 chrX 151425299 151425588 -11174342 + AluY SINE Alu 1 299 -12 3707 281 129 29 chrX 151425588 151425842 -11174088 + L2 LINE L2 1710 1937 -1377 23 0 0 0 chrX 151425935 151425958 -11173972 + AT_rich Low_complexity Low_complexity 1 23 0 1255 187 9 13 chrX 151426034 151426306 -11173624 - AluJo SINE Alu 0 327 57 25 31 0 0 chrX 151426983 151427015 -11172915 + AT_rich Low_complexity Low_complexity 1 32 0 13407 170 23 21 chrX 151427104 151432850 -11167080 - L1MA3 LINE L1 0 7724 1948 327 347 48 12 chrX 151433635 151434237 -11165693 - L1M4 LINE L1 -1346 4800 4177 1396 165 20 25 chrX 151434601 151435033 -11164897 + L1MB1 LINE L1 5092 5519 -649 1333 198 55 35 chrX 151435095 151435438 -11164492 + L1MB1 LINE L1 5819 6168 0 597 378 35 6 chrX 151435699 151436182 -11163748 + L2 LINE L2 2007 2590 -724 823 249 86 9 chrX 151436236 151436457 -11163473 + MER8 DNA MER2_type 1 238 -1 372 412 0 0 chrX 151436575 151436706 -11163224 + L2 LINE L2 3137 3267 -5 311 371 74 15 chrX 151436717 151436919 -11163011 - MIR SINE MIR -18 244 31 218 305 24 49 chrX 151436929 151437011 -11162919 + MIR SINE MIR 21 100 -108 578 113 0 10 chrX 151437876 151437973 -11161957 + AluY SINE Alu 211 306 -5 232 324 50 40 chrX 151438073 151438295 -11161635 + HAL1 LINE L1 9 232 -2275 450 340 31 6 chrX 151438309 151438471 -11161459 - HAL1 LINE L1 -1814 693 528 980 270 141 75 chrX 151438510 151438973 -11160957 + HAL1 LINE L1 272 703 -1804 2391 82 0 0 chrX 151438973 151439277 -11160653 - AluSc SINE Alu -5 304 1 980 270 141 75 chrX 151439277 151439708 -11160222 + HAL1 LINE L1 703 1225 -1282 1326 280 44 46 chrX 151439820 151440363 -11159567 + HAL1 LINE L1 1458 1999 -508 39 0 0 0 chrX 151440397 151440436 -11159494 + AT_rich Low_complexity Low_complexity 1 39 0 428 216 0 0 chrX 151440436 151440510 -11159420 - MER2 DNA MER2_type 0 345 272 341 134 60 0 chrX 151440537 151440604 -11159326 - MER2 DNA MER2_type -179 166 96 213 146 0 42 chrX 151440645 151440693 -11159237 + (TATG)n Simple_repeat Simple_repeat 3 48 0 846 268 35 46 chrX 151440719 151441200 -11158730 + HAL1 LINE L1 2032 2507 0 1310 207 70 0 chrX 151441459 151441759 -11158171 + L1M4 LINE L1 5349 5669 -515 774 208 0 0 chrX 151441761 151441891 -11158039 + FLAM_C SINE Alu 1 130 -13 273 92 4 0 chrX 151441920 151441966 -11157964 + L1M4 LINE L1 5690 5736 -435 217 226 38 0 chrX 151442218 151442271 -11157659 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 1062 153 158 0 chrX 151442309 151442505 -11157425 + MER30 DNA MER1_type 4 230 0 3260 149 33 191 chrX 151442623 151443314 -11156616 + L1MC3 LINE L1 6747 7171 -614 2173 107 3 10 chrX 151443314 151443613 -11156317 - AluSx SINE Alu -15 297 1 3260 149 33 191 chrX 151443613 151444118 -11155812 + L1MC3 LINE L1 7171 7754 -31 2818 186 39 19 chrX 151444234 151444807 -11155123 + L1MB2 LINE L1 5535 6122 -49 2379 79 0 7 chrX 151444807 151445110 -11154820 + AluSg SINE Alu 1 301 -9 2818 186 39 19 chrX 151445110 151445154 -11154776 + L1MB2 LINE L1 6122 6164 -7 252 263 0 0 chrX 151445502 151445559 -11154371 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 230 186 34 34 chrX 151445713 151445772 -11154158 - L1 LINE L1 -2202 3944 3886 21 0 0 0 chrX 151446370 151446391 -11153539 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrX 151446640 151446667 -11153263 + AT_rich Low_complexity Low_complexity 1 27 0 2209 113 7 0 chrX 151446676 151446985 -11152945 - AluSp SINE Alu -2 311 1 5053 133 18 1 chrX 151446987 151447802 -11152128 - L1PA16 LINE L1 -13 6856 6028 1287 101 0 0 chrX 151447802 151447970 -11151960 - AluSg/x SINE Alu -15 297 130 10722 246 19 20 chrX 151447970 151449026 -11150904 - L1PA16 LINE L1 -819 6030 4975 2227 123 0 0 chrX 151449026 151449328 -11150602 - AluSx SINE Alu -10 302 1 10722 246 19 20 chrX 151449328 151451503 -11148427 - L1PA16 LINE L1 -1874 4975 2801 7658 157 12 60 chrX 151451499 151452918 -11147012 - L1PA16 LINE L1 -4318 2531 1190 * 3044 131 17 6 chrX 151452918 151453398 -11146532 - LTR22B LTR ERVK -3 489 5 7658 157 12 60 chrX 151453398 151453519 -11146411 - L1PA16 LINE L1 -5659 1190 1065 1455 196 11 8 chrX 151453499 151453764 -11146166 - L1PA16 LINE L1 -6339 510 245 * 3153 56 0 0 chrX 151453767 151454158 -11145772 + L1PA4 LINE L1 5762 6152 -3 1562 183 4 8 chrX 151454170 151454432 -11145498 - L1PA16 LINE L1 -6588 261 1 204 40 0 0 chrX 151454789 151454814 -11145116 + (TA)n Simple_repeat Simple_repeat 2 26 0 1272 278 33 48 chrX 151454959 151455649 -11144281 - L2 LINE L2 0 3313 2631 375 319 59 37 chrX 151455721 151456171 -11143759 - HAL1b LINE L1 -613 735 273 216 0 0 0 chrX 151456171 151456195 -11143735 + (TC)n Simple_repeat Simple_repeat 2 25 0 7836 209 66 7 chrX 151456217 151457374 -11142556 + L1MC3 LINE L1 5845 7151 -634 216 0 0 0 chrX 151457374 151457398 -11142532 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 7836 209 66 7 chrX 151457398 151458055 -11141875 + L1MC3 LINE L1 7151 7767 -18 13739 142 35 25 chrX 151458627 151459681 -11140249 + Tigger1 DNA MER2_type 4 1046 -1372 1645 186 137 29 chrX 151459681 151459898 -11140032 - MSTA LTR MaLR 0 428 236 2057 133 0 3 chrX 151459898 151460192 -11139738 - AluSx SINE Alu -19 293 1 1645 186 137 29 chrX 151460192 151460360 -11139570 - MSTA LTR MaLR -192 236 1 13739 142 35 25 chrX 151460360 151461694 -11138236 + Tigger1 DNA MER2_type 1046 2415 -3 328 281 50 119 chrX 151461791 151462111 -11137819 - L1ME LINE L1 -304 5817 5520 13209 135 9 19 chrX 151463815 151465972 -11133958 + L1PA6 LINE L1 10 2144 -4002 16687 58 6 1 chrX 151465972 151468873 -11131057 + L1PA6 LINE L1 3247 6154 0 678 171 26 0 chrX 151468884 151469001 -11130929 + FLAM_C SINE Alu 5 124 -9 345 100 0 0 chrX 151469001 151469051 -11130879 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chrX 151470064 151470085 -11129845 + AT_rich Low_complexity Low_complexity 1 21 0 461 302 154 6 chrX 151470106 151470288 -11129642 - MIR SINE MIR -37 225 17 1956 137 91 26 chrX 151470379 151470721 -11129209 + THE1B LTR MaLR 1 364 0 1118 211 67 99 chrX 151470823 151471198 -11128732 + MLT1A1 LTR MaLR 1 363 -2 865 167 68 52 chrX 151471349 151471486 -11128444 - L1MA7 LINE L1 -30 6261 6117 2231 114 0 0 chrX 151471486 151471784 -11128146 - AluSg SINE Alu -12 298 1 865 167 68 52 chrX 151471784 151471898 -11128032 - L1MA7 LINE L1 -174 6117 6006 2225 101 26 10 chrX 151472748 151473056 -11126874 - AluSq SINE Alu 0 313 1 288 0 0 0 chrX 151473214 151473246 -11126684 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1715 139 4 0 chrX 151473246 151473497 -11126433 - AluSx SINE Alu -32 280 29 1581 150 56 21 chrX 151474117 151474403 -11125527 + AluSx SINE Alu 1 296 -16 2674 217 32 6 chrX 151474534 151475155 -11124775 - L1MB7 LINE L1 -132 6052 5416 747 0 0 0 chrX 151475188 151475271 -11124659 + (TTCTC)n Simple_repeat Simple_repeat 4 86 0 1892 121 11 7 chrX 151475273 151475425 -11124505 - AluSx SINE Alu -29 283 128 2557 14 0 0 chrX 151475425 151475718 -11124212 - L1PA3 LINE L1 -3 6152 5860 1892 121 11 7 chrX 151475718 151475847 -11124083 - AluSx SINE Alu -184 128 1 249 194 15 15 chrX 151475848 151475916 -11124014 - L1MB7 LINE L1 -735 5427 5360 1194 285 61 44 chrX 151475918 151475934 -11123996 - L1M4 LINE L1 -3944 2881 2867 2277 179 24 14 chrX 151475934 151476358 -11123572 + MSTA LTR MaLR 1 428 0 1194 285 61 44 chrX 151476358 151477299 -11122631 - L1M4 LINE L1 -3958 2867 1941 430 271 29 43 chrX 151477283 151477490 -11122440 - L1M4 LINE L1 -5261 1281 1078 * 2458 38 0 0 chrX 151477638 151477931 -11121999 - L1PA3 LINE L1 -3 6152 5860 318 245 115 74 chrX 151478068 151478391 -11121539 - L2 LINE L2 -9 3304 2969 324 360 50 50 chrX 151478485 151478594 -11121336 - L2 LINE L2 -260 3053 2942 1734 215 62 8 chrX 151478594 151478994 -11120936 + MSTB LTR MaLR 1 422 -4 324 360 50 50 chrX 151478994 151479084 -11120846 - L2 LINE L2 -370 2943 2854 620 289 40 36 chrX 151479119 151479372 -11120558 - L2 LINE L2 -1506 1808 1555 2296 166 64 48 chrX 151479372 151479873 -11120057 - LTR22 LTR ERVK 0 509 1 23 0 0 0 chrX 151479956 151479979 -11119951 + AT_rich Low_complexity Low_complexity 1 23 0 414 336 7 15 chrX 151480002 151480139 -11119791 - L2 LINE L2 -246 3026 2891 292 224 53 79 chrX 151480447 151480599 -11119331 + MIR SINE MIR 115 262 0 2107 131 0 0 chrX 151481407 151481705 -11118225 + AluSx SINE Alu 1 298 -14 2111 97 36 19 chrX 151482664 151482972 -11116958 + AluSq SINE Alu 1 313 0 801 262 10 20 chrX 151482973 151483175 -11116755 - MER58A DNA MER1_type -23 201 2 948 325 58 0 chrX 151483208 151483503 -11116427 + MLT1J LTR MaLR 7 318 -193 702 168 17 34 chrX 151484339 151484518 -11115412 + L1MA7 LINE L1 6110 6285 -6 1957 270 77 26 chrX 151486628 151487587 -11112343 - L1M4 LINE L1 -1133 5013 4006 450 283 167 28 chrX 151487589 151487769 -11112161 - MER58A DNA MER1_type -1 223 19 263 295 96 7 chrX 151487806 151488087 -11111843 - L1M4 LINE L1 -2786 3360 3055 269 79 0 0 chrX 151588087 151588125 -11011805 - FRAM/FAM SINE Alu -114 61 24 1005 174 28 19 chrX 151588490 151588703 -11011227 + L1MA4A LINE L1 5937 6151 -152 275 282 59 0 chrX 151588707 151588792 -11011138 - Charlie1 DNA MER1_type -280 2481 2392 2739 109 70 2 chrX 151588814 151589256 -11010674 - L1MA1 LINE L1 0 6302 5831 208 364 103 15 chrX 151589261 151589456 -11010474 - L2 LINE L2 -127 3186 2975 357 286 48 0 chrX 151589617 151589701 -11010229 + L2 LINE L2 3169 3256 -16 536 174 20 0 chrX 151590743 151590841 -11009089 - L1PA15 LINE L1 -171 5994 5895 835 171 61 6 chrX 151590842 151591006 -11008924 + L1PA15 LINE L1 5993 6165 0 375 244 115 35 chrX 151591314 151591514 -11008416 + MIR SINE MIR 5 212 -50 265 285 92 15 chrX 151591683 151591813 -11008117 - L2 LINE L2 -7 3306 3167 296 217 33 0 chrX 151592101 151592161 -11007769 - MIR SINE MIR -152 110 49 245 278 61 28 chrX 151592203 151592383 -11007547 - L1ME LINE L1 -238 5883 5698 555 287 39 8 chrX 151592387 151592516 -11007414 - L2 LINE L2 -4 3268 3136 2947 215 91 14 chrX 151592599 151593556 -11006374 - L1MB7 LINE L1 -55 7548 6516 * 4797 208 45 11 chrX 151593549 151595043 -11004887 - L1MB7 LINE L1 -2619 4946 3393 381 273 107 7 chrX 151595158 151595308 -11004622 + MER103 DNA DNA 1 165 -1 2416 55 0 26 chrX 151595872 151596183 -11003747 + AluY SINE Alu 1 303 -8 365 358 25 60 chrX 151597487 151597530 -11002400 - L2 LINE L2 -6 3266 3223 270 0 0 0 chrX 151597530 151597560 -11002370 + (GA)n Simple_repeat Simple_repeat 2 31 0 365 358 25 60 chrX 151597560 151597801 -11002129 - L2 LINE L2 -49 3223 2992 1373 287 98 65 chrX 151597880 151598853 -11001077 + L2 LINE L2 2230 3230 -83 435 330 69 21 chrX 151598980 151599313 -11000617 + L1ME LINE L1 5028 5376 -770 527 301 38 72 chrX 151599459 151599878 -11000052 + L1ME LINE L1 5386 5790 -374 210 71 0 0 chrX 151600055 151600083 -10999847 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 676 320 44 22 chrX 151600158 151600477 -10999453 + L1MC/D LINE L1 193 518 -5905 602 328 15 0 chrX 151600778 151600979 -10998951 + L1MC/D LINE L1 871 1074 -5349 1413 267 42 31 chrX 151601005 151601591 -10998339 + L1MC/D LINE L1 2019 2800 -4322 17801 186 10 10 chrX 151601692 151605311 -10994619 + L1PA14 LINE L1 1573 5191 -955 1468 161 0 0 chrX 151605311 151605551 -10994379 + L1PA14 LINE L1 5912 6159 -2 347 259 109 0 chrX 151605571 151605718 -10994212 - L1M4 LINE L1 -3747 2399 2237 1129 286 88 44 chrX 151605768 151606813 -10993117 + L1MC/D LINE L1 4036 5126 -1815 237 65 0 0 chrX 151606833 151606864 -10993066 + (CA)n Simple_repeat Simple_repeat 1 31 0 563 256 50 5 chrX 151607067 151607266 -10992664 + L1ME LINE L1 2677 2884 -3262 244 298 24 0 chrX 151607274 151607358 -10992572 + L1ME LINE L1 2937 3022 -3124 * 1483 271 104 48 chrX 151607353 151608590 -10991340 - L1M4c LINE L1 -3657 2725 1331 605 256 71 63 chrX 151608583 151608852 -10991078 + L1MC/D LINE L1 6280 6550 -2030 * 760 265 57 28 chrX 151608857 151609294 -10990636 + L1ME LINE L1 3916 4365 -1781 298 173 0 0 chrX 151609316 151609368 -10990562 - MER57A LTR ERV1 -25 378 327 1732 203 26 13 chrX 151609368 151609752 -10990178 - L1 LINE L1 -2237 3909 3521 349 329 54 6 chrX 151609791 151609958 -10989972 + L1ME LINE L1 4901 5075 -1071 1714 185 0 7 chrX 151610159 151610462 -10989468 + AluSx SINE Alu 1 301 -11 409 316 48 29 chrX 151610464 151610736 -10989194 + L1ME LINE L1 5330 5606 -558 1693 221 69 45 chrX 151610749 151611255 -10988675 + MLT2B1 LTR ERVL 3 520 0 300 302 97 59 chrX 151613268 151613639 -10986291 + MLT1H LTR MaLR 60 444 -105 362 259 27 9 chrX 151613803 151613915 -10986015 + MIR SINE MIR 91 204 -58 401 242 62 103 chrX 151614800 151615197 -10984733 - MLT1H LTR MaLR -27 528 26 195 303 28 95 chrX 151615348 151615559 -10984371 - MIR SINE MIR -46 216 20 280 348 76 0 chrX 151616288 151616380 -10983550 - L2 LINE L2 -18 3254 3156 446 138 0 0 chrX 151616730 151616821 -10983109 + AluS SINE Alu 224 314 0 5138 162 23 16 chrX 151617198 151618448 -10981482 - L1PB4 LINE L1 -5 6151 4899 995 251 130 14 chrX 151618461 151618891 -10981039 - Charlie7 DNA MER1_type -380 2232 1753 341 204 61 0 chrX 151618944 151619042 -10980888 - Charlie7 DNA MER1_type -2116 496 393 243 174 43 0 chrX 151619116 151619185 -10980745 - Charlie7 DNA MER1_type -2451 161 90 228 317 33 0 chrX 151619926 151619986 -10979944 - L2 LINE L2 -94 3178 3117 204 324 176 0 chrX 151620752 151620854 -10979076 + MIR SINE MIR 72 191 -71 21 0 0 0 chrX 151622414 151622435 -10977495 + AT_rich Low_complexity Low_complexity 1 21 0 2481 149 16 5 chrX 151623108 151623537 -10976393 - MER57B LTR ERV1 0 434 1 320 357 81 4 chrX 151624444 151624598 -10975332 - MIR SINE MIR -62 146 7 308 172 172 35 chrX 151625337 151625424 -10974506 - L1M4 LINE L1 -382 5802 5704 5830 63 156 68 chrX 151625428 151626508 -10973422 - MER11A LTR ERVK 0 1266 1 2430 246 39 28 chrX 151626569 151627208 -10972722 - L1M1 LINE L1 -6902 663 18 227 136 0 0 chrX 151627219 151627263 -10972667 + L1MC4 LINE L1 4622 4665 -1481 * 268 267 19 19 chrX 151627242 151627347 -10972583 + L1MC4 LINE L1 4924 5028 -1118 1317 216 172 16 chrX 151628737 151629180 -10970750 + L1MC4 LINE L1 5135 5191 -955 180 0 0 0 chrX 151629180 151629200 -10970730 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1317 216 172 16 chrX 151629200 151629453 -10970477 + L1MC4 LINE L1 5191 5403 -743 206 143 63 0 chrX 151629548 151629611 -10970319 + CT-rich Low_complexity Low_complexity 2 68 0 31 44 0 0 chrX 151630139 151630184 -10969746 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chrX 151630609 151630639 -10969291 + AT_rich Low_complexity Low_complexity 1 30 0 400 299 125 69 chrX 151630943 151631231 -10968699 - HAL1 LINE L1 -6 2501 2198 1035 298 83 32 chrX 151631747 151632409 -10967521 - HAL1 LINE L1 -365 2142 1447 286 274 60 103 chrX 151632649 151632901 -10967029 + MLT1L LTR MaLR 370 610 -5 475 270 66 31 chrX 151632906 151633102 -10966828 - HAL1 LINE L1 -1057 1450 1248 246 345 54 18 chrX 151633147 151633315 -10966615 + L2 LINE L2 1616 1789 -1525 302 327 51 28 chrX 151633457 151633674 -10966256 + MIR SINE MIR 14 235 -27 349 279 16 38 chrX 151635150 151635349 -10964581 + (TA)n Simple_repeat Simple_repeat 1 234 -52 186 48 24 48 chrX 151635349 151635391 -10964539 + (TATAA)n Simple_repeat Simple_repeat 5 45 0 349 279 16 38 chrX 151635391 151635443 -10964487 + (TA)n Simple_repeat Simple_repeat 234 286 0 894 215 60 36 chrX 151635475 151636152 -10963778 + L1ME2 LINE L1 5294 6150 -14 2272 87 3 0 chrX 151636197 151636495 -10963435 + AluSc SINE Alu 1 299 -10 302 240 100 0 chrX 151636554 151636654 -10963276 - L2 LINE L2 -1225 2089 1980 1026 126 0 0 chrX 151636691 151636864 -10963066 + AluSc SINE Alu 140 309 0 650 292 54 4 chrX 151636905 151637145 -10962785 - L2 LINE L2 -1457 1857 1606 1953 134 21 0 chrX 151637521 151637812 -10962118 + MER84 LTR ERVI 211 507 0 3942 142 68 5 chrX 151637812 151638434 -10961496 + MER84-int LTR ERV1 1 661 -4293 5246 113 10 9 chrX 151638434 151639079 -10960851 + MER84-int LTR ERV1 4186 4829 -125 2416 115 11 0 chrX 151639079 151639428 -10960502 + THE1A LTR MaLR 3 355 0 11144 103 11 1 chrX 151639428 151640992 -10958938 + THE1A-int LTR MaLR 1 1580 0 2488 100 6 17 chrX 151640992 151641351 -10958579 + THE1A LTR MaLR 1 355 0 5246 113 10 9 chrX 151641351 151641471 -10958459 + MER84-int LTR ERV1 4828 4954 0 3091 172 4 0 chrX 151641471 151641976 -10957954 + MER84 LTR ERV1 1 507 0 13488 165 20 52 chrX 151641976 151642115 -10957815 + L1MA2 LINE L1 2027 2169 -5554 2395 141 3 3 chrX 151642115 151642490 -10957440 - THE1C LTR MaLR 0 375 1 13488 165 20 52 chrX 151642490 151645798 -10954132 + L1MA2 LINE L1 2169 5215 -2508 1795 173 3 7 chrX 151645798 151646105 -10953825 + AluJb SINE Alu 3 308 -4 13488 165 20 52 chrX 151646105 151648535 -10951395 + L1MA2 LINE L1 5215 7723 0 1456 142 11 4 chrX 151648557 151648818 -10951112 + L1MA3 LINE L1 6043 6305 0 2078 274 26 46 chrX 151648825 151649725 -10950205 + L1MC/D LINE L1 3723 4604 -1542 665 254 82 9 chrX 151649728 151649948 -10949982 + L1MB5 LINE L1 5930 6165 -9 * 1007 210 28 30 chrX 151649939 151650226 -10949704 + L1MC/D LINE L1 4985 5274 -951 4617 109 25 10 chrX 151650226 151650907 -10949023 - LTR8 LTR ERV1 0 691 1 1007 210 28 30 chrX 151650907 151651116 -10948814 + L1MC/D LINE L1 5274 5482 -743 237 239 28 18 chrX 151651117 151651226 -10948704 + (TA)n Simple_repeat Simple_repeat 2 111 0 267 227 28 11 chrX 151651239 151651415 -10948515 + (TA)n Simple_repeat Simple_repeat 1 179 0 449 283 27 21 chrX 151651446 151651633 -10948297 - L1MDa LINE L1 -2420 4120 3933 1462 256 30 48 chrX 151651721 151652162 -10947768 + MLT1D LTR MaLR 1 433 -72 776 282 95 37 chrX 151652175 151653173 -10946757 - L1MDa LINE L1 -3661 2879 1573 3349 201 109 17 chrX 151653188 151653965 -10945965 - L1MC1 LINE L1 -6 6327 5479 2798 186 28 6 chrX 151653963 151654502 -10945428 - MLT1A1-int LTR MaLR -1183 552 2 * 668 190 30 0 chrX 151654503 151654630 -10945300 - MLT1A1 LTR MaLR 0 383 250 2486 62 3 0 chrX 151654931 151655236 -10944694 + AluY SINE Alu 1 306 -5 381 350 79 6 chrX 151656246 151656423 -10943507 - MIR SINE MIR -46 216 27 417 39 0 0 chrX 151657208 151657259 -10942671 + (CA)n Simple_repeat Simple_repeat 2 52 0 914 311 75 24 chrX 151657271 151657682 -10942248 + L1M4b LINE L1 24 455 -6404 1461 159 7 11 chrX 151657896 151658167 -10941763 - L1 LINE L1 -1324 4822 4553 5010 193 4 4 chrX 151658170 151659445 -10940485 + L1PA16 LINE L1 4876 6149 -17 28 48 0 0 chrX 151659860 151659902 -10940028 + AT_rich Low_complexity Low_complexity 1 42 0 470 308 39 66 chrX 151659996 151660301 -10939629 - MLT1J LTR MaLR -208 303 7 1517 200 72 75 chrX 151660841 151661212 -10938718 + MLT2D LTR ERVL 1 372 -42 378 0 0 0 chrX 151661212 151661254 -10938676 + (TG)n Simple_repeat Simple_repeat 2 43 0 1517 200 72 75 chrX 151661254 151661297 -10938633 + MLT2D LTR ERVL 372 414 0 377 336 140 73 chrX 151662459 151662774 -10937156 + L2 LINE L2 2864 3199 -73 273 119 0 0 chrX 151662903 151662945 -10936985 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 5099 99 9 37 chrX 151663333 151664175 -10935755 + L1MA2 LINE L1 5232 6049 -255 375 280 91 17 chrX 151664531 151664706 -10935224 + MLT1L LTR MaLR 81 268 -347 310 151 27 0 chrX 151664797 151664870 -10935060 + (TA)n Simple_repeat Simple_repeat 2 76 0 310 250 0 45 chrX 151664894 151665006 -10934924 + L1M4b LINE L1 1716 1822 -5138 287 264 0 0 chrX 151665039 151665111 -10934819 + L1M4b LINE L1 2480 2551 -4587 229 209 0 0 chrX 151666157 151666200 -10933730 - L3 LINE CR1 -8 1569 1527 225 83 0 0 chrX 151666200 151666236 -10933694 + (T)n Simple_repeat Simple_repeat 1 36 0 2139 137 5 39 chrX 151666256 151666644 -10933286 + THE1C LTR MaLR 1 375 0 530 284 85 18 chrX 151666720 151666925 -10933005 - MIR SINE MIR -29 233 19 246 353 108 0 chrX 151667074 151667213 -10932717 - L3 LINE CR1 -318 1259 1106 3859 177 55 32 chrX 151667350 151668307 -10931623 + MER11C LTR ERVK 1 1071 0 188 83 0 28 chrX 151669108 151669144 -10930786 + (TC)n Simple_repeat Simple_repeat 2 36 0 221 136 0 23 chrX 151669174 151669218 -10930712 + (CATA)n Simple_repeat Simple_repeat 4 46 0 795 253 85 20 chrX 151669428 151669721 -10930209 + L1ME1 LINE L1 4616 4927 -1219 * 1505 247 49 29 chrX 151669716 151669887 -10930043 + L1ME1 LINE L1 5396 5562 -604 2370 41 0 10 chrX 151669887 151670182 -10929748 + L1PA4 LINE L1 5864 6155 0 1505 247 49 29 chrX 151670182 151670723 -10929207 + L1ME1 LINE L1 5562 6162 -4 270 207 0 0 chrX 151670936 151670994 -10928936 + (TA)n Simple_repeat Simple_repeat 2 59 0 190 295 82 0 chrX 151671317 151671378 -10928552 + MIR SINE MIR 119 184 -78 253 286 124 9 chrX 151672113 151672218 -10927712 + MIR SINE MIR 75 191 -71 37 39 0 0 chrX 151672219 151672270 -10927660 + AT_rich Low_complexity Low_complexity 1 51 0 188 250 21 0 chrX 151672302 151672350 -10927580 + L2 LINE L2 3257 3305 -8 314 248 83 60 chrX 151672767 151672900 -10927030 + L1MC4a LINE L1 7493 7628 -180 306 287 27 73 chrX 151673017 151673084 -10926846 + L1ME3 LINE L1 5838 5907 -255 2092 150 60 24 chrX 151673084 151673497 -10926433 + MSTA LTR MaLR 1 428 0 306 287 27 73 chrX 151673497 151673579 -10926351 + L1ME3 LINE L1 5907 5980 -182 317 263 99 70 chrX 151673606 151673777 -10926153 + L1MC5 LINE L1 7732 7907 -54 226 326 0 11 chrX 151674009 151674098 -10925832 - L1ME LINE L1 -227 5935 5848 220 283 33 0 chrX 151674740 151674800 -10925130 + L2 LINE L2 3239 3300 -13 5323 191 79 98 chrX 151675789 151677579 -10922351 + MER52A LTR ERV1 1 1755 0 366 23 0 0 chrX 151677596 151677639 -10922291 + (T)n Simple_repeat Simple_repeat 1 43 0 2011 160 0 3 chrX 151677901 151678208 -10921722 - AluJb SINE Alu -6 306 1 220 308 15 0 chrX 151678367 151678432 -10921498 - L2 LINE L2 -3 3269 3204 353 254 50 100 chrX 151678802 151678946 -10920984 - L1MDa LINE L1 -3737 2825 2675 15646 27 0 6 chrX 151678946 151681590 -10918340 - L1PA2 LINE L1 0 6155 3523 353 254 50 100 chrX 151681590 151681812 -10918118 - L1MDa LINE L1 -3887 2675 2461 682 92 107 30 chrX 151683211 151683246 -10916684 - L1MA9 LINE L1 -2 6310 6279 14420 140 19 11 chrX 151683246 151685643 -10914287 - Tigger1 DNA MER2_type -1 2417 1 682 92 107 30 chrX 151685643 151685738 -10914192 - L1MA9 LINE L1 -33 6279 6170 2242 114 0 9 chrX 151685774 151686089 -10913841 + AluSx SINE Alu 1 312 0 2195 105 0 0 chrX 151686104 151686399 -10913531 + AluSq SINE Alu 1 295 -18 25 0 0 0 chrX 151686417 151686442 -10913488 + AT_rich Low_complexity Low_complexity 1 25 0 1074 210 8 17 chrX 151686569 151686807 -10913123 + L1MC2 LINE L1 6002 6237 -107 240 109 0 22 chrX 151686810 151686856 -10913074 + L1MC2 LINE L1 6291 6335 -9 230 65 0 0 chrX 151687187 151687218 -10912712 + L1M4 LINE L1 81 111 -6431 22 0 0 0 chrX 151687670 151687692 -10912238 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chrX 151688136 151688172 -10911758 + AT_rich Low_complexity Low_complexity 1 36 0 249 352 0 0 chrX 151688425 151688496 -10911434 + MIR SINE MIR 36 106 -102 806 320 157 12 chrX 151688684 151689194 -10910736 + L2 LINE L2 1747 2330 -984 214 330 117 21 chrX 151689270 151689364 -10910566 + L2 LINE L2 3134 3236 -36 454 359 140 11 chrX 151689375 151689726 -10910204 + L2 LINE L2 2862 3257 -56 350 356 105 31 chrX 151690120 151690642 -10909288 - L2 LINE L2 -579 2735 2175 202 182 36 0 chrX 151690989 151691044 -10908886 + T-rich Low_complexity Low_complexity 2 58 0 2066 131 0 0 chrX 151691056 151691338 -10908592 - AluSx SINE Alu -30 282 1 12708 166 28 3 chrX 151691350 151694934 -10904996 - L1MA1 LINE L1 -3 7718 4048 357 207 0 0 chrX 151694938 151695020 -10904910 + (TA)n Simple_repeat Simple_repeat 2 83 0 267 231 0 44 chrX 151695023 151695114 -10904816 + L1MC4 LINE L1 6615 6701 -1341 15874 176 26 18 chrX 151695129 151698078 -10901852 - L1MA1 LINE L1 -4586 2979 8 270 56 0 0 chrX 151698274 151698310 -10901620 + (TG)n Simple_repeat Simple_repeat 2 37 0 489 226 74 16 chrX 151699387 151699643 -10900287 + L1MD2 LINE L1 6027 6346 -13 651 310 59 78 chrX 151699913 151700455 -10899475 - L2 LINE L2 0 3313 2784 2372 143 55 53 chrX 151700490 151700523 -10899407 + MER4E LTR ERV1 1 32 -734 2624 3 0 0 chrX 151700523 151700841 -10899089 + AluYa5 SINE Alu 1 318 0 2372 143 55 53 chrX 151700841 151701220 -10898710 + MER4E LTR ERV1 32 569 -197 1897 124 0 4 chrX 151701220 151701494 -10898436 - AluSc SINE Alu 0 309 37 2372 143 55 53 chrX 151701494 151701693 -10898237 + MER4E LTR ERV1 569 766 0 23 33 0 0 chrX 151701782 151701812 -10898118 + AT_rich Low_complexity Low_complexity 1 30 0 2143 136 30 22 chrX 151701976 151702337 -10897593 + THE1B LTR MaLR 1 364 0 2425 99 0 10 chrX 151702483 151703050 -10896880 - MER51A LTR ERV1 0 634 3 254 302 36 50 chrX 151703115 151703254 -10896676 - L2 LINE L2 -18 3295 3159 328 281 111 27 chrX 151703976 151704162 -10895768 + MIR SINE MIR 4 206 -56 1056 213 147 3 chrX 151704173 151704473 -10895457 + MER2 DNA MER2_type 2 344 0 1372 206 36 4 chrX 151704835 151705116 -10894814 - AluJo SINE Alu -22 290 1 291 222 18 14 chrX 151705116 151705146 -10894784 - AluJ/monomer SINE Alu -302 0 2 421 269 53 41 chrX 151705463 151705634 -10894296 - MIR SINE MIR -14 248 76 3237 150 17 0 chrX 151705887 151706414 -10893516 - L1PA16 LINE L1 -108 6058 5523 2348 135 8 6 chrX 151706824 151707187 -10892743 - THE1B LTR MaLR 0 364 1 10035 107 35 44 chrX 151707187 151708781 -10891149 - THE1B-int LTR MaLR 0 1580 1 2673 104 0 0 chrX 151708781 151709145 -10890785 - THE1B LTR MaLR 0 364 1 522 378 62 9 chrX 151709411 151709845 -10890085 + L2 LINE L2 1716 2172 -1142 2756 111 1 14 chrX 151709886 151710433 -10889497 - MER4A LTR ERV1 0 664 1 25 51 0 0 chrX 151710734 151710773 -10889157 + AT_rich Low_complexity Low_complexity 1 39 0 472 370 21 11 chrX 151710919 151711203 -10888727 - L2 LINE L2 -1279 2035 1749 308 279 0 12 chrX 151711419 151711505 -10888425 - L2 LINE L2 -3 3269 3185 22 35 0 0 chrX 151712076 151712105 -10887825 + AT_rich Low_complexity Low_complexity 1 29 0 3201 120 28 42 chrX 151712375 151712633 -10887297 + MER34B LTR ERV1 1 261 -304 2510 64 0 0 chrX 151712633 151712931 -10886999 + AluY SINE Alu 5 302 -9 3201 120 28 42 chrX 151712931 151713245 -10886685 + MER34B LTR ERV1 261 565 0 606 120 0 20 chrX 151713847 151713947 -10885983 + MER4A LTR ERV1 1 98 -566 762 110 66 31 chrX 151713947 151714128 -10885802 + MER4A LTR ERV1 261 506 -158 2183 216 123 33 chrX 151714137 151714802 -10885128 + MER50 LTR ERV1 10 734 0 1114 112 0 12 chrX 151714802 151714963 -10884967 + MER4A LTR ERV1 506 664 0 2851 109 170 14 chrX 151714965 151715452 -10884478 + MER50-int LTR ERV1 1 563 -6035 352 127 0 56 chrX 151715513 151715584 -10884346 + MER50-int LTR ERV1 743 809 -5789 1489 231 55 0 chrX 151715649 151715956 -10883974 + MER50-int LTR ERV1 1845 2168 -4163 1821 138 4 4 chrX 151715997 151716273 -10883657 + MER50-int LTR ERV1 198 473 -6285 5504 109 92 121 chrX 151716274 151717858 -10882072 + pTR5 LTR ERV1 741 2438 0 2130 152 28 33 chrX 151717858 151718523 -10881407 + MER50-int LTR ERV1 469 1185 -5573 4054 93 74 17 chrX 151718536 151719235 -10880695 + MER50-int LTR ERV1 1756 2494 -4104 1180 198 62 0 chrX 151719235 151719478 -10880452 - LTR8 LTR ERV1 -433 258 1 3802 146 61 36 chrX 151719478 151720395 -10879535 + MER4A-int LTR ERV1 2737 3676 -2922 * 4710 138 50 19 chrX 151720393 151721269 -10878661 + MER4A-int LTR ERV1 3815 4717 -1881 21 0 0 0 chrX 151721277 151721298 -10878632 + AT_rich Low_complexity Low_complexity 1 21 0 6819 15 0 0 chrX 151721298 151722078 -10877852 - L1PA2 LINE L1 0 6155 5376 10724 125 38 15 chrX 151722078 151723889 -10876041 + MER4A-int LTR ERV1 4747 6598 0 636 115 0 10 chrX 151723893 151723989 -10875941 + MER4A LTR ERV1 4 98 -566 1572 132 50 24 chrX 151723989 151724317 -10875613 + MER4A LTR ERV1 261 664 0 216 0 0 0 chrX 151725152 151725176 -10874754 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1252 295 42 29 chrX 151726888 151728173 -10871757 + L1ME2 LINE L1 1440 2704 -3511 1646 147 111 33 chrX 151728173 151728507 -10871423 - THE1B LTR MaLR -1 363 4 1252 295 42 29 chrX 151728507 151728690 -10871240 + L1ME2 LINE L1 2704 2883 -3332 684 222 113 20 chrX 151728687 151728989 -10870941 + L1ME2 LINE L1 2819 3148 -3067 * 389 296 136 39 chrX 151728989 151729246 -10870684 + L1MCc LINE L1 316 597 -5826 957 259 105 31 chrX 151729341 151729761 -10870169 + L1MCc LINE L1 799 1249 -5174 571 217 147 0 chrX 151729838 151729981 -10869949 + MER67B LTR ERV1 498 661 0 251 242 44 11 chrX 151729981 151730072 -10869858 + L1ME2 LINE L1 5272 5365 -850 188 163 0 20 chrX 151730072 151730121 -10869809 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 2113 259 48 32 chrX 151730126 151730365 -10869565 + L1ME2 LINE L1 5437 5671 -562 2349 166 24 7 chrX 151730365 151730786 -10869144 - MSTB1 LTR MaLR 0 432 5 2113 259 48 32 chrX 151730786 151731296 -10868634 + L1ME2 LINE L1 5671 6198 -35 21 0 0 0 chrX 151731315 151731336 -10868594 + AT_rich Low_complexity Low_complexity 1 21 0 522 310 109 0 chrX 151731935 151732109 -10867821 - MIR SINE MIR -31 231 39 222 365 86 40 chrX 151732406 151732628 -10867302 - L2 LINE L2 -233 3039 2808 810 263 17 0 chrX 151733874 151734053 -10865877 + MER5A DNA MER1_type 2 183 -6 545 276 61 124 chrX 151734689 151735179 -10864751 - L2 LINE L2 0 3272 2814 381 260 74 31 chrX 151735930 151736123 -10863807 - MLT1J LTR MaLR -331 180 12 198 171 0 0 chrX 151736946 151736987 -10862943 + (AAATG)n Simple_repeat Simple_repeat 5 45 0 182 174 22 0 chrX 151737588 151737634 -10862296 + (TA)n Simple_repeat Simple_repeat 2 48 0 315 215 0 0 chrX 151737709 151737774 -10862156 - L1PA16 LINE L1 0 6166 6102 * 3848 188 23 6 chrX 151737773 151738817 -10861113 - L1P4 LINE L1 -588 5577 4525 348 243 70 29 chrX 151738814 151739002 -10860928 + L1P LINE L1 2724 2918 -3228 * 6931 236 11 6 chrX 151738985 151740735 -10859195 + L1P LINE L1 2760 4518 -1628 1175 279 46 18 chrX 151790758 151791327 -10808603 + L1ME LINE L1 1507 2091 -4759 710 263 36 43 chrX 151791340 151791831 -10808099 + L1ME LINE L1 5792 6279 -589 1113 193 23 20 chrX 151791891 151792196 -10807734 - L1MA8 LINE L1 -22 6269 5964 10282 213 35 21 chrX 151792296 151796287 -10803643 + L1PA13 LINE L1 2813 6849 -16 24 77 0 0 chrX 151796798 151796850 -10803080 + AT_rich Low_complexity Low_complexity 1 52 0 1152 108 21 10 chrX 151796916 151797188 -10802742 - LTR7 LTR ERV1 -128 322 1 1326 117 105 61 chrX 151797188 151797530 -10802400 + MER4-int LTR ERV1 2921 3277 -3321 9211 101 21 5 chrX 151797562 151799799 -10800131 + L1PA8A LINE L1 3832 6103 -28 209 32 0 32 chrX 151799805 151799836 -10800094 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 3149 114 5 2 chrX 151802018 151802466 -10797464 + LTR2 LTR ERV1 1 449 0 20617 98 17 19 chrX 151803643 151807913 -10792017 - L1P LINE L1 -1887 4259 17 396 145 0 13 chrX 151807915 151807991 -10791939 + L1MEc LINE L1 1999 2073 -4323 2216 129 19 38 chrX 151809311 151809682 -10790248 + THE1B LTR MaLR 1 364 0 11277 108 5 4 chrX 151809682 151811261 -10788669 + THE1B-int LTR MaLR 1 1580 0 2166 119 27 43 chrX 151811261 151811631 -10788299 + THE1B LTR MaLR 1 364 0 274 336 76 43 chrX 151812069 151812280 -10787650 + L1M4b LINE L1 270 487 -6372 1512 250 85 25 chrX 151812294 151812451 -10787479 + L1M4b LINE L1 582 728 -6131 2235 141 0 15 chrX 151812451 151812792 -10787138 + MER1B DNA MER1_type 2 337 0 1512 250 85 25 chrX 151812792 151813186 -10786744 + L1M4b LINE L1 728 1166 -5693 828 168 0 15 chrX 151813189 151813320 -10786610 + FLAM_C SINE Alu 1 129 -14 854 253 62 47 chrX 151813337 151813740 -10786190 + L1M4b LINE L1 1155 1563 -5296 946 200 0 0 chrX 151813855 151814020 -10785910 + AluSg/x SINE Alu 122 286 -24 3178 186 9 7 chrX 151814027 151814119 -10785811 + L1 LINE L1 4547 4637 -1509 1569 149 6 90 chrX 151814119 151814442 -10785488 + AluJo SINE Alu 11 306 -6 3178 186 9 7 chrX 151814442 151815031 -10784899 + L1 LINE L1 4637 5229 -917 2546 139 26 18 chrX 151815249 151815702 -10784228 + LTR22A LTR ERVK 2 458 0 4606 124 43 19 chrX 151815704 151816494 -10783436 + HERVK22 LTR ERVK 3 811 -6026 2937 86 2 32 chrX 151816488 151816930 -10783000 + HERVK22 LTR ERVK 2328 2756 -4081 * 7350 124 6 8 chrX 151816923 151818237 -10781693 + HERVK22 LTR ERVK 3182 6837 0 2472 161 11 15 chrX 151818238 151818697 -10781233 + LTR22A LTR ERVK 2 458 0 2122 260 81 9 chrX 151819917 151821608 -10778322 + L1MB7 LINE L1 298 2131 -4828 252 231 64 0 chrX 151821729 151821807 -10778123 + L1MB7 LINE L1 2111 2193 -4766 934 246 66 63 chrX 151821827 151821988 -10777942 + L1MB7 LINE L1 5901 6060 -917 2302 103 0 3 chrX 151821988 151822298 -10777632 + AluSc SINE Alu 1 309 0 934 246 66 63 chrX 151822298 151822801 -10777129 + L1MB7 LINE L1 6060 6562 -415 283 278 10 0 chrX 151822849 151822946 -10776984 + CT-rich Low_complexity Low_complexity 1 98 0 217 167 21 0 chrX 151823396 151823444 -10776486 + A-rich Low_complexity Low_complexity 4 52 0 1539 254 85 38 chrX 151823743 151824020 -10775910 + L1ME1 LINE L1 5149 5411 -755 1113 22 15 0 chrX 151824020 151824154 -10775776 + L1PA4 LINE L1 6016 6151 -4 1539 254 85 38 chrX 151824154 151824798 -10775132 + L1ME1 LINE L1 5411 6109 -57 2332 96 0 10 chrX 151825176 151825479 -10774451 - AluSx SINE Alu -12 300 1 1096 258 31 23 chrX 151826307 151826698 -10773232 - L1ME3 LINE L1 -114 6048 5655 622 200 0 9 chrX 151826698 151826813 -10773117 + AluJo SINE Alu 35 148 -164 1226 239 14 20 chrX 151826886 151827234 -10772696 - MLT1A2 LTR MaLR 0 374 29 1790 250 0 0 chrX 151827264 151827664 -10772266 - MLT1A2-int LTR MaLR -7 1728 1329 586 256 44 34 chrX 151827663 151827819 -10772111 + L1MB7 LINE L1 6675 6837 -158 * 2216 72 35 0 chrX 151827819 151828109 -10771821 - AluSp SINE Alu -13 300 1 586 256 44 34 chrX 151828109 151828249 -10771681 + L1MB7 LINE L1 6837 6974 -21 386 263 135 8 chrX 151828447 151828580 -10771350 - MER50 LTR ERV1 -571 163 14 1783 121 19 0 chrX 151828913 151829170 -10770760 - AluSx SINE Alu -50 262 1 1911 111 57 6 chrX 151829323 151829656 -10770274 + MER4C LTR ERV1 116 465 0 207 0 0 0 chrX 151830108 151830131 -10769799 + (A)n Simple_repeat Simple_repeat 1 23 0 228 130 0 0 chrX 151830530 151830576 -10769354 + (CA)n Simple_repeat Simple_repeat 2 47 0 1565 176 88 51 chrX 151830868 151831243 -10768687 + MER61B LTR ERV1 1 389 -36 582 241 7 14 chrX 151831304 151831385 -10768545 + AluJo SINE Alu 54 135 -177 2082 136 7 3 chrX 151831385 151831686 -10768244 + AluSg SINE Alu 1 302 -8 582 241 7 14 chrX 151831686 151831745 -10768185 + AluJo SINE Alu 135 193 -119 1209 167 19 16 chrX 151831745 151832002 -10767928 - LTR4 LTR ERV1 0 596 339 666 146 8 16 chrX 151832305 151832428 -10767502 + AluJo SINE Alu 188 309 -3 1726 134 148 33 chrX 151833097 151833463 -10766467 + MER4B LTR ERV1 1 408 -202 1167 101 0 6 chrX 151833452 151833621 -10766309 + MER4E LTR ERV1 598 765 -1 * 383 345 75 29 chrX 151833623 151834033 -10765897 + HAL1b LINE L1 447 842 -506 490 260 49 49 chrX 151834577 151834800 -10765130 - MER97b DNA MER1_type? -480 573 351 1751 207 25 61 chrX 151835077 151835714 -10764216 + L1MDb LINE L1 943 1556 -4987 1423 231 76 25 chrX 151835722 151835833 -10764097 + L1MDb LINE L1 1990 2094 -4446 3805 158 124 11 chrX 151835833 151836575 -10763355 - LTR1B LTR ERV1 0 826 1 1423 231 76 25 chrX 151836575 151837140 -10762790 + L1MDb LINE L1 2094 2697 -3843 313 236 21 131 chrX 151837153 151837390 -10762540 - L1MC4a LINE L1 -876 6932 6780 2152 137 132 5 chrX 151837515 151837895 -10762035 - MSTA LTR MaLR 0 428 1 21 89 0 0 chrX 151838157 151838213 -10761717 + AT_rich Low_complexity Low_complexity 1 56 0 25 0 0 0 chrX 151838238 151838263 -10761667 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 151838319 151838341 -10761589 + AT_rich Low_complexity Low_complexity 1 22 0 601 356 18 27 chrX 151838524 151838858 -10761072 + L1MA4 LINE L1 305 635 -5614 2954 254 98 27 chrX 151839550 151841158 -10758772 + L1MA4 LINE L1 539 2249 -4079 4975 225 43 5 chrX 151841261 151843273 -10756657 + L1MA4 LINE L1 4377 6478 -4 4494 52 48 0 chrX 151843487 151844089 -10755841 - L1PA8 LINE L1 -190 5982 5352 10816 211 27 10 chrX 151844091 151846729 -10753201 - L1P LINE L1 -1281 4865 2184 1019 159 0 0 chrX 151846728 151846891 -10753039 + L1PA12 LINE L1 197 359 -7222 * 1340 263 42 48 chrX 151846891 151847370 -10752560 + MLT2B3 LTR ERVL 73 548 -6 706 226 13 7 chrX 151847379 151847534 -10752396 - L1M3d LINE L1 -5733 158 3 404 287 114 51 chrX 151847784 151848021 -10751909 - MIR SINE MIR 0 262 11 217 219 0 0 chrX 151848888 151848929 -10751001 + (CAT)n Simple_repeat Simple_repeat 3 43 0 231 36 0 0 chrX 151849188 151849216 -10750714 + (TA)n Simple_repeat Simple_repeat 1 28 0 305 250 75 8 chrX 151850016 151850136 -10749794 + L1MCa LINE L1 1937 2064 -4362 * 317 322 0 0 chrX 151850073 151850163 -10749767 - L1MC4 LINE L1 -1339 6703 6614 * 320 287 23 0 chrX 151850156 151850243 -10749687 + L1MC4 LINE L1 6615 6703 -1339 321 167 0 0 chrX 151850804 151850829 -10749101 + GA-rich Low_complexity Low_complexity 1 25 -41 225 0 0 0 chrX 151850829 151850854 -10749076 + (CA)n Simple_repeat Simple_repeat 2 26 0 321 167 0 0 chrX 151850854 151850894 -10749036 + GA-rich Low_complexity Low_complexity 24 66 0 550 108 59 0 chrX 151851559 151851661 -10748269 - L1MA9 LINE L1 -10 6302 6195 754 266 120 29 chrX 151851682 151851727 -10748203 + L1M4 LINE L1 4405 4444 -1702 1548 245 71 21 chrX 151851727 151852204 -10747726 + MLT1D LTR MaLR 1 501 -4 754 266 120 29 chrX 151852204 151852652 -10747278 + L1M4 LINE L1 4444 4963 -1183 180 0 0 0 chrX 151852652 151852672 -10747258 + (TA)n Simple_repeat Simple_repeat 2 21 0 754 266 120 29 chrX 151852672 151852767 -10747163 + L1M4 LINE L1 4963 5048 -1098 37 23 0 0 chrX 151852772 151852816 -10747114 + AT_rich Low_complexity Low_complexity 1 44 0 485 266 55 25 chrX 151852874 151853073 -10746857 + L1M4 LINE L1 5089 5293 -853 207 295 179 0 chrX 151853120 151853198 -10746732 + L2 LINE L2 3180 3271 -42 731 84 0 0 chrX 151853945 151854052 -10745878 - MSTA LTR MaLR -319 109 3 7580 192 42 7 chrX 151854056 151855614 -10744316 - MSTA-int LTR MaLR -2 1649 37 1824 129 90 6 chrX 151855614 151855946 -10743984 - MSTA LTR MaLR -68 360 1 230 224 0 0 chrX 151855946 151856013 -10743917 + L1M4 LINE L1 1094 1160 -4885 287 264 49 35 chrX 151856117 151856261 -10743669 + L1M4 LINE L1 2000 2145 -4600 510 141 30 10 chrX 151856278 151856377 -10743553 + MER4A LTR ERV1 1 101 -563 * 1395 164 13 91 chrX 151856370 151856749 -10743181 + MER4A LTR ERV1 257 664 0 1046 230 81 44 chrX 151856798 151857320 -10742610 + L1M4 LINE L1 2229 2769 -3976 1658 160 10 45 chrX 151857718 151858031 -10741899 - AluSx SINE Alu -10 302 1 1993 130 0 7 chrX 151858042 151858334 -10741596 - AluSq SINE Alu -23 290 1 3706 9 7 0 chrX 151858346 151858769 -10741161 - L1PA2 LINE L1 0 6155 5730 1526 6 0 6 chrX 151858769 151858942 -10740988 + L1PA2 LINE L1 5563 5734 -421 929 142 71 0 chrX 151859069 151859224 -10740706 + AluSg/x SINE Alu 132 297 -15 228 400 54 0 chrX 151859379 151859509 -10740421 + MER91C DNA MER1_type 3 139 -1 387 0 0 0 chrX 151860163 151860206 -10739724 + (CA)n Simple_repeat Simple_repeat 2 44 0 356 0 23 0 chrX 151860205 151860249 -10739681 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 543 112 103 0 chrX 151860903 151861010 -10738920 - L1MA9 LINE L1 0 6312 6195 1606 257 80 9 chrX 151861072 151861535 -10738395 + MLT1D LTR MaLR 1 496 -9 991 265 132 28 chrX 151861547 151862295 -10737635 + L1M4 LINE L1 4866 5691 -873 22 0 0 0 chrX 151862528 151862550 -10737380 + AT_rich Low_complexity Low_complexity 1 22 0 368 259 27 9 chrX 151863201 151863313 -10736617 - MIR SINE MIR -58 204 91 825 268 67 36 chrX 151864285 151864758 -10735172 + L1M4 LINE L1 329 880 -5975 1341 194 27 13 chrX 151864817 151865126 -10734804 - L1M4 LINE L1 -613 5561 5250 2283 102 0 10 chrX 151865126 151865429 -10734501 + AluSx SINE Alu 1 300 -12 1341 194 27 13 chrX 151865429 151865546 -10734384 - L1M4 LINE L1 -924 5250 5136 1226 246 22 25 chrX 151865599 151865965 -10733965 + MLT1A1 LTR MaLR 1 365 0 245 260 41 0 chrX 151866033 151866106 -10733824 + L1M4 LINE L1 5854 5929 -673 1429 180 30 14 chrX 151866137 151866432 -10733498 + L1M4 LINE L1 5918 6217 -385 185 286 0 0 chrX 151866563 151866605 -10733325 + MIR SINE MIR 218 259 -3 246 227 0 0 chrX 151867408 151867452 -10732478 + L1M4 LINE L1 1173 1216 -5643 44472 33 5 1 chrX 151867722 151873884 -10726046 + L1PA3 LINE L1 7 6155 0 2018 281 50 34 chrX 151874062 151875258 -10724672 + L1M4 LINE L1 1221 2495 -4462 699 219 99 0 chrX 151875300 151875492 -10724438 + L1M4 LINE L1 3048 3258 -3699 * 2408 160 46 0 chrX 151875487 151876091 -10723839 + L1M1 LINE L1 5081 5706 -599 361 341 110 42 chrX 151876398 151876753 -10723177 + MLT1G LTR MaLR 17 395 -195 404 271 77 24 chrX 151876841 151877011 -10722919 + MLT1G LTR MaLR 405 583 -7 979 279 51 3 chrX 151877051 151877384 -10722546 + L1MCb LINE L1 1 349 -5696 326 157 0 59 chrX 151877386 151877438 -10722492 + CT-rich Low_complexity Low_complexity 1 46 -50 2561 102 94 5 chrX 151877438 151877851 -10722079 - LTR7 LTR ERV1 0 450 1 326 157 0 59 chrX 151877851 151877900 -10722030 + CT-rich Low_complexity Low_complexity 46 96 0 1110 222 27 0 chrX 151877982 151878207 -10721723 - MLT1C LTR MaLR -10 457 227 759 212 0 27 chrX 151878848 151878994 -10720936 + FAM SINE Alu 2 143 -42 180 0 0 0 chrX 151879566 151879586 -10720344 + (TG)n Simple_repeat Simple_repeat 2 21 0 860 253 112 28 chrX 151879620 151879847 -10720083 - L1MEc LINE L1 -2897 3318 3111 2519 112 6 8 chrX 151879847 151880212 -10719718 + THE1B LTR MaLR 1 364 0 860 253 112 28 chrX 151880212 151880850 -10719080 - L1MEc LINE L1 -3104 3111 2289 913 297 63 62 chrX 151880867 151881800 -10718130 - L1MEc LINE L1 -4273 2123 1190 824 320 92 31 chrX 151881881 151882491 -10717439 - L1M4 LINE L1 -1434 4712 4066 24 53 0 0 chrX 151882857 151882895 -10717035 + AT_rich Low_complexity Low_complexity 1 38 0 230 95 24 0 chrX 151883347 151883389 -10716541 + (TA)n Simple_repeat Simple_repeat 1 43 0 13600 197 23 9 chrX 151883624 151884489 -10715441 + L1PA13 LINE L1 520 1371 -5443 414 0 0 0 chrX 151884489 151884535 -10715395 + (CA)n Simple_repeat Simple_repeat 1 46 0 13600 197 23 9 chrX 151884535 151886474 -10713456 + L1PA13 LINE L1 1371 3280 -3534 288 0 0 0 chrX 151886474 151886506 -10713424 + (CA)n Simple_repeat Simple_repeat 1 32 0 13600 197 23 9 chrX 151886506 151889486 -10710444 + L1PA13 LINE L1 3280 6814 0 306 327 48 10 chrX 151889969 151890073 -10709857 - MIR3 SINE MIR -49 159 52 238 337 34 22 chrX 151890209 151890298 -10709632 + L2 LINE L2 2554 2643 -671 212 320 26 13 chrX 151891180 151891258 -10708672 + MIR SINE MIR 178 256 -6 351 0 0 0 chrX 151891819 151891858 -10708072 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 57 0 0 chrX 151892431 151892466 -10707464 + (A)n Simple_repeat Simple_repeat 1 35 0 195 100 0 0 chrX 151893205 151893235 -10706695 + (TC)n Simple_repeat Simple_repeat 2 31 0 744 268 68 19 chrX 151893766 151894087 -10705843 + L1M4 LINE L1 3904 4240 -1906 306 212 12 12 chrX 151894114 151894199 -10705731 + L1MA10 LINE L1 6250 6334 0 1669 263 85 35 chrX 151894307 151894851 -10705079 - MLT1E LTR MaLR -1 592 22 466 245 98 0 chrX 151894926 151895069 -10704861 + L1M4 LINE L1 3533 3689 -2457 729 78 72 0 chrX 151895070 151895236 -10704694 + (TA)n Simple_repeat Simple_repeat 1 178 0 1872 93 4 31 chrX 151896455 151896714 -10703216 + AluSp SINE Alu 1 252 -61 3660 213 36 52 chrX 151896907 151897973 -10701957 - L1MC3 LINE L1 -30 7755 6707 1054 129 42 10 chrX 151897981 151898207 -10701723 - L1PA16 LINE L1 -2 6164 5904 264 347 0 0 chrX 151898202 151898300 -10701630 - L1MC3 LINE L1 -1076 6709 6612 * 2428 163 7 43 chrX 151898300 151898737 -10701193 + MSTB1 LTR MaLR 1 421 -11 5139 219 41 57 chrX 151898737 151899885 -10700045 - L1MC3 LINE L1 -745 5401 4237 1852 136 0 21 chrX 151899885 151900172 -10699758 + AluSx SINE Alu 1 281 -31 5139 219 41 57 chrX 151900172 151900217 -10699713 - L1MC3 LINE L1 -1909 4237 4193 261 0 0 0 chrX 151900217 151900246 -10699684 + (TA)n Simple_repeat Simple_repeat 1 29 0 5139 219 41 57 chrX 151900246 151900522 -10699408 - L1MC3 LINE L1 -1953 4193 5170 1215 152 13 0 chrX 151900522 151900746 -10699184 - L1MA4 LINE L1 -2 6298 6072 5139 219 41 57 chrX 151900746 151901096 -10698834 - L1MC3 LINE L1 -975 5171 4817 198 0 0 0 chrX 151901097 151901119 -10698811 + (TA)n Simple_repeat Simple_repeat 1 22 0 3627 54 0 15 chrX 151901120 151901583 -10698347 - L1PA7 LINE L1 -21 6133 5678 738 127 18 0 chrX 151901578 151901741 -10698189 + L1P3 LINE L1 345 648 -5813 * 569 269 5 34 chrX 151901739 151901947 -10697983 - L1MC3 LINE L1 -1322 4824 4623 * 889 290 30 9 chrX 151901936 151902363 -10697567 - L1MC3 LINE L1 -2461 3685 3250 823 63 2 0 chrX 151902429 151902543 -10697387 - L1PA13 LINE L1 -300 5863 5751 882 278 28 12 chrX 151902547 151902978 -10696952 - L1MC3 LINE L1 -2928 3218 2781 1101 150 2 20 chrX 151902988 151903000 -10696930 + MER4B LTR ERV1 434 445 -165 5610 113 53 18 chrX 151903000 151904092 -10695838 - L1PA13 LINE L1 -10 6153 5053 1101 150 2 20 chrX 151904092 151904270 -10695660 + MER4B LTR ERV1 445 610 0 2624 115 139 52 chrX 151904273 151904813 -10695117 + MER4B-int LTR ERV1 1 587 -6011 1414 79 72 72 chrX 151904809 151905086 -10694844 + MER4B-int LTR ERV1 1005 1281 -5317 * 382 114 0 63 chrX 151905069 151905148 -10694782 + MER4B-int LTR ERV1 1498 1571 -5027 * 4382 65 57 27 chrX 151905146 151905850 -10694080 + MER4B-int LTR ERV1 1771 2495 -4103 1250 180 62 8 chrX 151905850 151906094 -10693836 - LTR8 LTR ERV1 -434 257 1 1052 37 74 0 chrX 151906099 151906261 -10693669 + MER4-int LTR ERV1 2752 2925 -3673 2076 99 16 21 chrX 151906263 151906668 -10693262 - LTR7 LTR ERV1 -2 448 1 2818 113 9 12 chrX 151906668 151907100 -10692830 - HERVH LTR ERV1 0 7713 7283 1976 151 23 19 chrX 151907096 151907531 -10692399 - HERVH LTR ERV1 -2252 4402 3673 * 1646 66 44 0 chrX 151907531 151907758 -10692172 + LTR2B LTR ERV1 1 237 -253 2832 101 0 9 chrX 151907779 151908223 -10691707 - HERVH LTR ERV1 -6435 1278 839 439 123 89 81 chrX 151908220 151908417 -10691513 - HERVH LTR ERV1 -7082 631 460 * 1574 118 3 96 chrX 151908472 151908804 -10691126 - HERVH LTR ERV1 -7254 459 159 8283 56 11 41 chrX 151908904 151910780 -10689150 + L1PA6 LINE L1 4301 6148 -6 1299 147 16 98 chrX 151911013 151911387 -10688543 - MER4A LTR ERV1 0 664 263 491 160 20 10 chrX 151911386 151911486 -10688444 - MER4A LTR ERV1 -563 101 1 * 428 262 93 27 chrX 151911489 151911672 -10688258 - L1MEc LINE L1 -4586 2021 1827 301 313 76 15 chrX 151911673 151911804 -10688126 - L1MEc LINE L1 -5331 1095 957 1750 146 94 3 chrX 151911804 151912134 -10687796 + MSTA LTR MaLR 1 360 -68 7202 197 42 8 chrX 151912136 151913696 -10686234 + MSTA-int LTR MaLR 39 1651 0 655 80 20 0 chrX 151913698 151913798 -10686132 + MSTA LTR MaLR 3 104 -324 226 222 0 16 chrX 151914203 151914266 -10685664 + L1ME4a LINE L1 6060 6121 0 22 80 0 0 chrX 151914715 151914765 -10685165 + AT_rich Low_complexity Low_complexity 1 50 0 927 271 106 26 chrX 151914769 151915430 -10684500 - L1M4 LINE L1 -933 5213 4500 1279 251 124 11 chrX 151915484 151915934 -10683996 - MLT1D LTR MaLR -4 501 1 457 144 58 0 chrX 151915997 151916101 -10683829 + L1MA9 LINE L1 6193 6302 -10 1880 135 0 14 chrX 151916865 151917147 -10682783 + AluSg SINE Alu 1 278 -32 219 405 53 0 chrX 151917766 151917897 -10682033 - MER91C DNA MER1_type 0 140 3 1032 169 0 0 chrX 151918052 151918224 -10681706 - AluSg/x SINE Alu -9 303 132 2033 146 0 3 chrX 151918360 151918661 -10681269 + AluSq SINE Alu 1 300 -13 1811 152 47 0 chrX 151918672 151918969 -10680961 + AluSx SINE Alu 1 311 -1 571 259 68 35 chrX 151919380 151919774 -10680156 - L1MEc LINE L1 -3991 2405 1999 1484 156 3 37 chrX 151919774 151920130 -10679800 - MER4A LTR ERV1 0 664 263 283 121 69 17 chrX 151920147 151920205 -10679725 - MER4A LTR ERV1 -603 61 1 1254 154 100 43 chrX 151920508 151920658 -10679272 + MSTA LTR MaLR 45 185 -243 2283 94 0 16 chrX 151920658 151920967 -10678963 + AluSc SINE Alu 1 304 -5 1254 154 100 43 chrX 151920967 151921115 -10678815 + MSTA LTR MaLR 185 360 -68 7036 194 51 23 chrX 151921115 151922680 -10677250 + MSTA-int LTR MaLR 37 1645 -6 706 63 0 36 chrX 151922687 151922798 -10677132 + MSTA LTR MaLR 3 109 -319 22 35 0 0 chrX 151923398 151923427 -10676503 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 151923679 151923702 -10676228 + AT_rich Low_complexity Low_complexity 1 23 0 636 261 101 65 chrX 151923718 151924412 -10675518 - L1M4 LINE L1 -933 5213 4495 1282 236 127 33 chrX 151924449 151924907 -10675023 - MLT1D LTR MaLR -4 501 1 449 148 8 2 chrX 151924939 151925036 -10674894 + L1MA8 LINE L1 6175 6265 -26 8533 18 27 12 chrX 151925092 151926894 -10673036 - L1PA2 LINE L1 -6 6149 4328 11870 36 0 26 chrX 151926894 151928496 -10671434 + L1PA2 LINE L1 2779 4339 -1807 2195 112 0 13 chrX 151929243 151929548 -10670382 + AluSg SINE Alu 1 301 -9 234 392 54 0 chrX 151930130 151930260 -10669670 - MER91C DNA MER1_type 0 140 4 1033 180 0 0 chrX 151930416 151930594 -10669336 - AluSg/x SINE Alu -3 307 130 1526 149 35 16 chrX 151930729 151930984 -10668946 + AluSq SINE Alu 1 260 -53 613 92 0 41 chrX 151930984 151931082 -10668848 + AluSg/x SINE Alu 209 302 -8 432 0 0 0 chrX 151931097 151931145 -10668785 + (TG)n Simple_repeat Simple_repeat 1 48 0 198 0 0 0 chrX 151931461 151931483 -10668447 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 212 281 0 0 chrX 151932639 151932703 -10667227 + CT-rich Low_complexity Low_complexity 1 64 0 3606 161 64 14 chrX 151932778 151933494 -10666436 + ERVL-D LTR ERVL 5006 5757 -7 1036 189 33 111 chrX 151933494 151933986 -10665944 + MLT2D LTR ERVL 1 491 -63 345 197 0 0 chrX 151934279 151934350 -10665580 + (TA)n Simple_repeat Simple_repeat 1 71 0 2094 163 12 27 chrX 151936034 151936444 -10663486 + L1MA6 LINE L1 5892 6295 -5 2154 116 0 3 chrX 151936463 151936757 -10663173 - AluSq SINE Alu -20 293 1 212 134 10 93 chrX 151936896 151936993 -10662937 + A-rich Low_complexity Low_complexity 4 92 0 301 156 39 39 chrX 151937440 151937568 -10662362 + CT-rich Low_complexity Low_complexity 5 132 0 956 219 23 82 chrX 151937568 151937847 -10662083 + L1ME1 LINE L1 5672 5901 -265 2116 143 0 0 chrX 151937847 151938148 -10661782 + AluSx SINE Alu 1 301 -11 956 219 23 82 chrX 151938148 151938325 -10661605 + L1ME1 LINE L1 5901 6087 -79 180 111 0 0 chrX 151939124 151939151 -10660779 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 354 88 0 0 chrX 151939529 151939586 -10660344 + L1MA6 LINE L1 6242 6298 -2 27 29 0 0 chrX 151940494 151940528 -10659402 + AT_rich Low_complexity Low_complexity 1 34 0 259 220 33 0 chrX 151940604 151940695 -10659235 + (TA)n Simple_repeat Simple_repeat 2 95 0 1958 173 30 18 chrX 151942303 151942737 -10657193 + L1MB3 LINE L1 5384 5822 -361 611 198 18 0 chrX 151942741 151942852 -10657078 - FLAM_A SINE Alu -16 126 14 1718 165 46 3 chrX 151942867 151943218 -10656712 + L1MB3 LINE L1 5818 6183 0 594 28 0 0 chrX 151943640 151943712 -10656218 + (TC)n Simple_repeat Simple_repeat 2 73 0 2121 160 27 38 chrX 151944026 151944476 -10655454 - L1MA10 LINE L1 -8 6326 5882 2419 199 19 32 chrX 151944476 151944695 -10655235 + L1MB1 LINE L1 5306 5526 -663 1593 134 60 76 chrX 151944695 151945075 -10654855 - THE1C LTR MaLR 0 375 2 2419 199 19 32 chrX 151945075 151945447 -10654483 + L1MB1 LINE L1 5526 5889 -300 1737 161 6 53 chrX 151945639 151945962 -10653968 - AluJo SINE Alu -4 308 1 2354 97 0 0 chrX 151945973 151946272 -10653658 - AluSq SINE Alu -14 299 1 508 236 7 20 chrX 151946536 151946684 -10653246 + L1ME1 LINE L1 45 190 -6206 450 279 6 0 chrX 151946778 151946936 -10652994 + L1ME1 LINE L1 4565 4723 -1492 237 242 125 17 chrX 151946940 151947060 -10652870 - L1MA9 LINE L1 -38 6274 6142 540 183 62 53 chrX 151947061 151947125 -10652805 + L1ME1 LINE L1 4711 4773 -1442 2338 57 0 24 chrX 151947125 151947423 -10652507 + AluY SINE Alu 1 291 -20 540 183 62 53 chrX 151947423 151947566 -10652364 + L1ME1 LINE L1 4773 4920 -1295 * 1757 259 74 24 chrX 151947565 151948198 -10651732 + L1ME1 LINE L1 5560 6224 -11 324 0 0 0 chrX 151948550 151948586 -10651344 + (CA)n Simple_repeat Simple_repeat 1 36 0 4602 107 1 7 chrX 151949084 151950188 -10649742 + L1PA11 LINE L1 4807 5904 -270 205 347 157 0 chrX 151950347 151950468 -10649462 + MER91C DNA MER1_type 1 140 0 2104 243 100 12 chrX 151950839 151951440 -10648490 + MLT1E1 LTR MaLR 1 654 0 501 312 90 39 chrX 151953047 151953257 -10646673 + MIR SINE MIR 3 216 -46 4498 94 0 14 chrX 151953293 151953949 -10645981 + L1PA12 LINE L1 5522 6168 0 1197 160 43 43 chrX 151954624 151954905 -10645025 - L1MA9 LINE L1 -22 6290 6010 3191 277 55 34 chrX 151955681 151956662 -10643268 + L1M4 LINE L1 310 1268 -5691 2184 95 7 7 chrX 151956662 151956968 -10642962 + AluSc SINE Alu 1 306 -3 3191 277 55 34 chrX 151956968 151957258 -10642672 + L1M4 LINE L1 1268 1550 -5409 1925 121 8 0 chrX 151957258 151957522 -10642408 - AluSx SINE Alu -17 295 30 3191 277 55 34 chrX 151957522 151958102 -10641828 + L1M4 LINE L1 1550 2198 -4761 581 284 67 42 chrX 151958120 151958705 -10641225 + L1ME LINE L1 5097 5695 -471 254 234 0 0 chrX 151958839 151958903 -10641027 + CT-rich Low_complexity Low_complexity 1 64 0 1961 101 4 0 chrX 151959932 151960189 -10639741 - AluSx SINE Alu -27 285 28 2402 72 0 3 chrX 151960441 151960746 -10639184 + AluY SINE Alu 1 304 -7 1259 112 0 0 chrX 151960749 151960919 -10639011 + AluY SINE Alu 141 310 -1 688 273 65 60 chrX 151961191 151961608 -10638322 + L1ME LINE L1 1207 1625 -4759 1108 268 28 36 chrX 151961620 151962296 -10637634 + L1ME LINE L1 5325 5986 -416 463 266 30 88 chrX 152014400 152014705 -10585225 + L1M4 LINE L1 4444 4730 -2227 21 0 0 0 chrX 152015235 152015256 -10584674 + AT_rich Low_complexity Low_complexity 1 21 0 1051 267 69 42 chrX 152016171 152016549 -10583381 - REP3 LTR ERV -174 388 1 687 287 61 32 chrX 152016681 152016960 -10582970 - MLT1L LTR MaLR -21 594 308 278 250 42 0 chrX 152016973 152017045 -10582885 - MLT1L LTR MaLR -540 75 1 315 177 0 0 chrX 152017382 152017444 -10582486 + CT-rich Low_complexity Low_complexity 2 63 0 205 253 172 11 chrX 152017529 152017616 -10582314 - MIR SINE MIR -6 256 156 206 333 0 17 chrX 152017704 152017764 -10582166 - L2 LINE L2 -36 3236 3178 273 361 62 7 chrX 152017920 152018064 -10581866 - L2 LINE L2 -204 3068 2917 1869 144 15 16 chrX 152018147 152018451 -10581479 - MER51B LTR ERV1 0 377 130 2006 145 27 30 chrX 152018451 152018816 -10581114 - THE1B LTR MaLR 0 364 1 1869 144 15 16 chrX 152018816 152018897 -10581033 - MER51B LTR ERV1 -247 130 50 517 108 140 11 chrX 152018913 152019006 -10580924 - MER51A LTR ERV1 -529 105 1 461 338 45 0 chrX 152019073 152019206 -10580724 - L2 LINE L2 0 3272 3134 4252 94 1 88 chrX 152019216 152019941 -10579989 - MER4A LTR ERV1 -2 662 1 236 323 45 45 chrX 152020010 152020143 -10579787 - L2 LINE L2 -23 3290 3158 435 231 8 69 chrX 152020299 152020429 -10579501 + MLT1I LTR MaLR 52 173 -236 706 274 75 24 chrX 152020430 152020642 -10579288 - MER58A DNA MER1_type -1 223 1 558 333 42 9 chrX 152020663 152020879 -10579051 + MLT1I LTR MaLR 187 409 0 331 110 41 14 chrX 152021017 152021090 -10578840 - L1MA7 LINE L1 -1 6290 6216 13050 225 27 21 chrX 152022538 152026694 -10573236 - L1PA16 LINE L1 -9 7595 3376 2306 109 3 0 chrX 152026694 152027005 -10572925 - AluSx SINE Alu 0 312 1 13050 225 27 21 chrX 152027005 152028208 -10571722 - L1PA16 LINE L1 -4228 3376 2182 1432 297 70 52 chrX 152028352 152029449 -10570481 - L1PA16 LINE L1 -5637 1944 10 30 27 0 0 chrX 152029669 152029706 -10570224 + AT_rich Low_complexity Low_complexity 1 37 0 837 277 53 18 chrX 152029987 152030269 -10569661 - MER54A LTR ERVL -308 593 302 327 252 87 8 chrX 152033069 152033196 -10566734 + L1ME4a LINE L1 5978 6114 -7 425 320 8 0 chrX 152033202 152033324 -10566606 - L2 LINE L2 -1 3312 3190 27 0 0 0 chrX 152033542 152033569 -10566361 + AT_rich Low_complexity Low_complexity 1 27 0 709 307 55 8 chrX 152034610 152034848 -10565082 - MIR SINE MIR -12 250 2 362 367 44 62 chrX 152034876 152035151 -10564779 - L2 LINE L2 -4 3268 2999 203 175 0 0 chrX 152036272 152036312 -10563618 + T-rich Low_complexity Low_complexity 3 42 0 679 271 16 10 chrX 152036852 152037044 -10562886 - MLT1J2 LTR MaLR -241 209 17 5188 191 29 10 chrX 152037375 152039147 -10560783 - L1MA10 LINE L1 0 6334 4531 1097 220 159 0 chrX 152039462 152039758 -10560172 + MER2 DNA MER2_type 1 343 -1 974 223 122 0 chrX 152039990 152040187 -10559743 - MER58A DNA MER1_type 0 224 4 299 339 9 9 chrX 152040213 152040328 -10559602 - L3 LINE CR1 -79 1498 1384 25 31 0 0 chrX 152040428 152040460 -10559470 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 152041010 152041038 -10558892 + AT_rich Low_complexity Low_complexity 1 28 0 12905 233 43 21 chrX 152041039 152044923 -10555007 + L1PA13 LINE L1 185 4205 -2592 1921 171 0 3 chrX 152044923 152045232 -10554698 - AluSx SINE Alu -2 310 3 12905 233 43 21 chrX 152045232 152046267 -10553663 + L1PA13 LINE L1 4205 5216 -1581 2169 136 31 19 chrX 152046267 152046627 -10553303 + THE1B LTR MaLR 1 364 0 9772 133 51 3 chrX 152046627 152048134 -10551796 + THE1C-int LTR MaLR 1 1580 0 2674 89 13 11 chrX 152048136 152048508 -10551422 + THE1C LTR MaLR 3 375 0 1114 160 0 76 chrX 152048508 152048746 -10551184 - L1PB4 LINE L1 -46 6110 5891 241 272 160 16 chrX 152049152 152049277 -10550653 + MIR SINE MIR 9 151 -111 650 127 9 5 chrX 152049387 152049589 -10550341 + AluSx SINE Alu 1 301 -11 1514 84 9 0 chrX 152049823 152050037 -10549893 - L1MA1 LINE L1 -5 6297 6082 897 97 0 0 chrX 152050044 152050178 -10549752 + (TCCA)n Simple_repeat Simple_repeat 3 136 0 342 325 10 68 chrX 152050179 152050385 -10549545 - L2 LINE L2 -4 3309 3116 211 317 48 48 chrX 152050605 152050709 -10549221 - L2 LINE L2 -280 2992 2889 332 211 0 0 chrX 152051208 152051265 -10548665 + Charlie5 DNA MER1_type 2 58 -2554 * 437 173 20 87 chrX 152051260 152051410 -10548520 + Charlie5 DNA MER1_type 2445 2584 -28 237 264 75 38 chrX 152051484 152051590 -10548340 + Tigger8 DNA MER2_type 202 311 -355 388 242 11 21 chrX 152052227 152052322 -10547608 + MER5A DNA MER1_type 95 188 -1 418 343 0 0 chrX 152052322 152052446 -10547484 - MIR SINE MIR -51 157 34 676 306 88 61 chrX 152052592 152053001 -10546929 - L3 LINE CR1 -5 1572 1153 29 0 0 0 chrX 152053055 152053084 -10546846 + AT_rich Low_complexity Low_complexity 1 29 0 232 224 7 0 chrX 152053238 152053294 -10546636 + Charlie8 DNA MER1_type 1371 2417 0 309 293 29 79 chrX 152053294 152053434 -10546496 - L3 LINE CR1 -442 1135 1003 2233 107 0 0 chrX 152054268 152054566 -10545364 + AluSx SINE Alu 1 298 -14 229 329 29 14 chrX 152054769 152054839 -10545091 + MIR3 SINE MIR 5 75 -133 23 0 0 0 chrX 152054995 152055018 -10544912 + AT_rich Low_complexity Low_complexity 1 23 0 297 319 111 7 chrX 152055059 152055203 -10544727 + MIR SINE MIR 29 187 -75 351 305 14 64 chrX 152055235 152055376 -10544554 - L3 LINE CR1 -442 1135 1002 516 246 157 48 chrX 152055942 152056190 -10543740 - LTR40b LTR ERVL -1 461 187 586 241 34 69 chrX 152056613 152056807 -10543123 + MIR3 SINE MIR 17 202 -6 14527 129 16 21 chrX 152056927 152060767 -10539163 + L1PA8 LINE L1 10 5715 -746 * 18115 25 0 1 chrX 152060750 152062914 -10537016 - L1PA2 LINE L1 -1693 4453 2292 7852 14 0 1 chrX 152062914 152064614 -10535316 + L1PA2 LINE L1 4455 6155 0 5806 71 5 0 chrX 152064664 152065450 -10534480 + L1PA8 LINE L1 5701 6490 0 26 50 0 0 chrX 152065520 152065560 -10534370 + AT_rich Low_complexity Low_complexity 1 40 0 237 103 0 0 chrX 152066850 152066870 -10533060 + (GA)n Simple_repeat Simple_repeat 2 21 -19 204 40 0 0 chrX 152066870 152066895 -10533035 + (TA)n Simple_repeat Simple_repeat 1 25 0 237 103 0 0 chrX 152066895 152066913 -10533017 + (GA)n Simple_repeat Simple_repeat 20 40 0 1825 229 75 17 chrX 152067311 152067788 -10532142 - MLT1D LTR MaLR 0 505 1 211 335 66 46 chrX 152067814 152067966 -10531964 - L2 LINE L2 -470 2844 2690 229 277 119 10 chrX 152068256 152068357 -10531573 - MIR3 SINE MIR -1 207 96 711 254 57 0 chrX 152069659 152069836 -10530094 - MIR SINE MIR 0 262 76 230 271 0 0 chrX 152070737 152070796 -10529134 + (TA)n Simple_repeat Simple_repeat 1 59 0 240 312 0 73 chrX 152071187 152071296 -10528634 + L2 LINE L2 2995 3095 -177 319 214 244 38 chrX 152071372 152071503 -10528427 - MIR SINE MIR -13 249 92 229 200 0 0 chrX 152071572 152071627 -10528303 + L1MC4 LINE L1 6649 6703 -1339 353 220 17 11 chrX 152071629 152071806 -10528124 + (TA)n Simple_repeat Simple_repeat 2 179 0 711 135 39 0 chrX 152071806 152071962 -10527968 + GA-rich Low_complexity Low_complexity 1 162 0 904 207 45 43 chrX 152071963 152072275 -10527655 - MLT2C2 LTR ERVL -92 372 1 183 345 52 0 chrX 152072278 152072336 -10527594 - MIR SINE MIR -200 62 2 * 281 370 47 16 chrX 152072336 152072442 -10527488 + L2 LINE L2 3163 3272 0 22 0 0 0 chrX 152072531 152072553 -10527377 + AT_rich Low_complexity Low_complexity 1 22 0 192 326 43 29 chrX 152074011 152074149 -10525781 + L2 LINE L2 2397 2536 -778 569 338 109 17 chrX 152074525 152074874 -10525056 + LTR16C LTR ERVL 111 491 0 326 331 41 23 chrX 152074875 152075047 -10524883 - L1ME LINE L1 -336 5785 5611 259 266 119 64 chrX 152075235 152075344 -10524586 + L2 LINE L2 3199 3313 0 624 140 0 40 chrX 152075573 152075673 -10524257 + MER65A LTR ERV1 152 247 -198 560 372 105 5 chrX 152075682 152076074 -10523856 - L2 LINE L2 -1087 2227 1797 2221 81 3 0 chrX 152076088 152076385 -10523545 - L1P3 LINE L1 -545 5627 5330 3640 81 4 4 chrX 152076385 152076877 -10523053 + L1PA8 LINE L1 5680 6171 -1 447 300 79 54 chrX 152076982 152077259 -10522671 - L2 LINE L2 -1724 1590 1307 186 209 0 0 chrX 152077847 152077890 -10522040 + (CA)n Simple_repeat Simple_repeat 2 44 0 450 279 37 47 chrX 152078370 152078560 -10521370 - LTR41 LTR ERVL -585 188 1 249 200 0 86 chrX 152078562 152078632 -10521298 + LTR50 LTR ERVL 14 77 -718 209 314 65 57 chrX 152078669 152078793 -10521137 - MIR3 SINE MIR -19 189 65 2141 104 0 0 chrX 152079055 152079368 -10520562 + AluSx SINE Alu 6 318 0 26 0 0 0 chrX 152080111 152080137 -10519793 + AT_rich Low_complexity Low_complexity 1 26 0 214 152 0 43 chrX 152080333 152080379 -10519551 + (CTA)n Simple_repeat Simple_repeat 1 44 0 726 274 26 34 chrX 152081252 152081486 -10518444 + MIR SINE MIR 28 259 -3 2251 135 117 5 chrX 152081538 152081923 -10518007 - MSTA LTR MaLR 0 428 1 218 259 17 17 chrX 152082173 152082231 -10517699 - MIR SINE MIR -69 139 82 376 283 117 11 chrX 152082513 152082693 -10517237 - L2 LINE L2 0 3313 3115 289 361 109 11 chrX 152082939 152083213 -10516717 - L2 LINE L2 -428 2886 2586 5112 141 31 7 chrX 152083542 152084042 -10515888 + L1PA16 LINE L1 4984 5470 -696 294 50 0 0 chrX 152084042 152084082 -10515848 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5112 141 31 7 chrX 152084082 152084742 -10515188 + L1PA16 LINE L1 5470 6166 0 246 340 42 21 chrX 152084802 152084946 -10514984 + MIR SINE MIR 50 196 -66 322 324 81 7 chrX 152085958 152086106 -10513824 + MLT1L LTR MaLR 1 159 -456 493 303 43 35 chrX 152086196 152086450 -10513480 + MLT1L LTR MaLR 360 615 0 21 0 0 0 chrX 152087273 152087294 -10512636 + AT_rich Low_complexity Low_complexity 1 21 0 2281 92 3 0 chrX 152087359 152087653 -10512277 - AluY SINE Alu -16 295 1 1851 205 77 36 chrX 152088088 152088849 -10511081 + L1MD2 LINE L1 5450 6349 -10 334 130 40 10 chrX 152090474 152090574 -10509356 + (TA)n Simple_repeat Simple_repeat 2 104 0 530 30 0 0 chrX 152090649 152090716 -10509214 - L1PA8 LINE L1 -7 6165 6099 445 259 23 15 chrX 152091023 152091154 -10508776 + MER94 DNA DNA 1 132 -2 425 279 46 46 chrX 152091206 152091425 -10508505 - L1MEd LINE L1 -5899 220 2 271 254 106 21 chrX 152091488 152091630 -10508300 + L1ME4a LINE L1 5968 6121 0 240 310 60 52 chrX 152091959 152092075 -10507855 + MIR SINE MIR 107 223 -39 1747 175 57 54 chrX 152092275 152092413 -10507517 + L1MA9 LINE L1 5669 5805 -507 267 103 0 0 chrX 152092413 152092452 -10507478 + (CA)n Simple_repeat Simple_repeat 2 40 0 1747 175 57 54 chrX 152092452 152092754 -10507176 + L1MA9 LINE L1 5805 6110 -202 249 113 0 57 chrX 152092793 152092846 -10507084 - LTR66 LTR ERVL -163 447 398 207 100 0 0 chrX 152092846 152092876 -10507054 + (TA)n Simple_repeat Simple_repeat 2 31 0 2218 115 0 13 chrX 152092972 152093286 -10506644 - AluSx SINE Alu -2 310 1 411 306 8 8 chrX 152093323 152093447 -10506483 - L2 LINE L2 0 3313 3190 831 239 83 26 chrX 152093627 152093840 -10506090 - MIR SINE MIR -18 244 16 3930 118 53 2 chrX 152093840 152094444 -10505486 + MER41B LTR ERV1 1 635 0 831 239 83 26 chrX 152094444 152094460 -10505470 - MIR SINE MIR -246 16 2 1724 117 25 7 chrX 152094478 152094761 -10505169 + L1PB2 LINE L1 5857 6144 -7 204 231 0 0 chrX 152094761 152094800 -10505130 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 249 213 0 64 chrX 152094800 152094894 -10505036 - L1MC4 LINE L1 -1341 6701 6614 * 263 270 0 0 chrX 152094818 152094907 -10505023 + L1MC4 LINE L1 6614 6702 -1340 223 278 0 0 chrX 152094914 152094968 -10504962 - L2 LINE L2 -338 2975 2922 305 267 11 11 chrX 152094970 152095060 -10504870 - L2 LINE L2 -1650 1664 1575 249 253 99 33 chrX 152095430 152095521 -10504409 + L2 LINE L2 3207 3303 -10 1749 225 129 43 chrX 152095562 152096230 -10503700 + MER50 LTR ERV1 10 734 0 382 291 40 93 chrX 152096301 152096579 -10503351 + LTR16C LTR ERVL 6 268 -223 2260 163 31 0 chrX 152096594 152096980 -10502950 + MER57A LTR ERV1 6 403 0 3130 151 23 23 chrX 152096987 152097557 -10502373 + MER41B LTR ERV1 1 570 -65 8268 178 21 19 chrX 152097566 152097814 -10502116 - L1 LINE L1 -1194 4952 4706 2134 98 0 4 chrX 152097814 152098090 -10501840 - AluSx SINE Alu -24 288 14 8268 178 21 19 chrX 152098090 152099632 -10500298 - L1 LINE L1 -1440 4706 3159 1774 172 63 0 chrX 152099637 152099956 -10499974 + Tigger1 DNA MER2_type 1293 1631 -787 * 2302 147 29 21 chrX 152099928 152100349 -10499581 + Tigger1 DNA MER2_type 1993 2416 -2 232 247 24 24 chrX 152100550 152100635 -10499295 + L2 LINE L2 2702 2786 -528 254 303 62 110 chrX 152100737 152101027 -10498903 + L2 LINE L2 2890 3165 -107 212 324 113 21 chrX 152101160 152101302 -10498628 + MIR SINE MIR 41 195 -67 1530 264 130 33 chrX 152101896 152102610 -10497320 + L1ME LINE L1 369 1012 -5203 189 0 0 0 chrX 152102610 152102631 -10497299 + (CA)n Simple_repeat Simple_repeat 2 22 0 1530 264 130 33 chrX 152102631 152103130 -10496800 + L1ME LINE L1 1012 1674 -4541 400 176 23 53 chrX 152103158 152103289 -10496641 + L1ME1 LINE L1 4535 4661 -1485 827 187 0 11 chrX 152103289 152103476 -10496454 + L1ME1 LINE L1 4863 5047 -1099 842 185 97 5 chrX 152103512 152103707 -10496223 + L1ME1 LINE L1 5304 5516 -662 * 958 221 54 45 chrX 152103705 152104014 -10495916 + L1ME1 LINE L1 5829 6143 -23 1867 196 68 70 chrX 152104014 152104569 -10495361 + MLT2B3 LTR ERVL 1 554 0 958 221 54 45 chrX 152104569 152104590 -10495340 + L1ME1 LINE L1 6143 6162 -4 21 36 0 0 chrX 152105048 152105076 -10494854 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 152105238 152105266 -10494664 + AT_rich Low_complexity Low_complexity 1 28 0 1743 125 70 0 chrX 152105884 152106189 -10493741 + AluSx SINE Alu 1 312 0 905 236 83 43 chrX 152106660 152107010 -10492920 + L1ME LINE L1 1884 2218 -3997 1897 126 7 0 chrX 152107010 152107295 -10492635 - AluSq SINE Alu -25 288 2 905 236 83 43 chrX 152107295 152107537 -10492393 + L1ME LINE L1 2218 2449 -3766 3306 87 2 0 chrX 152107537 152107983 -10491947 - L1PA8 LINE L1 0 6172 5726 905 236 83 43 chrX 152107983 152108210 -10491720 + L1ME LINE L1 2449 2684 -3531 718 263 53 3 chrX 152108283 152108621 -10491309 + L1ME LINE L1 2851 3205 -3010 * 3646 234 78 88 chrX 152108610 152109038 -10490892 + L1ME1 LINE L1 2597 3028 -3118 5325 144 6 19 chrX 152109038 152110293 -10489637 + L1PA16 LINE L1 4909 6157 -9 3646 234 78 88 chrX 152110293 152112034 -10487896 + L1ME1 LINE L1 3028 4744 -1402 6689 34 0 1 chrX 152112050 152112836 -10487094 - L1PA5 LINE L1 -8 6146 5362 3068 31 10 0 chrX 152112829 152113214 -10486716 + L1PA5 LINE L1 4979 5367 -779 * 2157 257 25 25 chrX 152113212 152114279 -10485651 + L1ME1 LINE L1 4730 6048 -118 * 248 200 0 0 chrX 152114283 152114338 -10485592 + L1MA10 LINE L1 6277 6331 -3 2147 103 3 0 chrX 152114374 152114694 -10485236 + AluSp SINE Alu 1 321 0 25 51 0 0 chrX 152114817 152114856 -10485074 + AT_rich Low_complexity Low_complexity 1 39 0 850 202 67 14 chrX 152115466 152115674 -10484256 + L1MA9 LINE L1 6057 6275 -37 908 297 54 9 chrX 152115899 152116326 -10483604 + L1M4b LINE L1 1215 1660 -5199 * 3599 175 7 28 chrX 152116325 152117079 -10482851 - L1MA6 LINE L1 -1062 5084 4347 * 5238 161 50 9 chrX 152117070 152117735 -10482195 + L1MA6 LINE L1 5086 5820 -480 266 0 29 0 chrX 152117735 152117769 -10482161 + (CA)n Simple_repeat Simple_repeat 2 36 0 5238 161 50 9 chrX 152117769 152118266 -10481664 + L1MA6 LINE L1 5820 6295 -5 285 254 144 0 chrX 152118319 152118437 -10481493 - MLT1H1 LTR MaLR -1 554 420 1129 233 12 98 chrX 152118471 152118870 -10481060 + MLT1A1 LTR MaLR 1 365 0 368 331 24 0 chrX 152119036 152119163 -10480767 - MLT1H LTR MaLR -354 195 66 269 299 47 0 chrX 152119567 152119674 -10480256 + (CATA)n Simple_repeat Simple_repeat 4 115 0 1495 213 55 9 chrX 152119683 152120012 -10479918 + MER2 DNA MER2_type 1 344 0 239 274 72 33 chrX 152120051 152120204 -10479726 - L1MC4a LINE L1 -1878 5930 5772 688 306 16 0 chrX 152120249 152120432 -10479498 + MIR SINE MIR 3 188 -74 762 318 41 33 chrX 152120432 152120825 -10479105 - MLT1I LTR MaLR -6 403 8 262 222 153 0 chrX 152120832 152120904 -10479026 + MIR SINE MIR 180 262 0 1825 164 3 12 chrX 152120975 152121311 -10478619 - L1PA16 LINE L1 0 6166 5834 423 231 51 39 chrX 152122625 152122781 -10477149 - L2 LINE L2 -54 3259 3102 943 231 39 34 chrX 152123071 152123305 -10476625 - MIR SINE MIR -19 243 9 1086 209 27 9 chrX 152123341 152123561 -10476369 - MER58A DNA MER1_type 0 224 1 355 247 226 0 chrX 152123642 152123735 -10476195 - MIR SINE MIR -134 128 15 840 141 0 22 chrX 152124629 152124764 -10475166 - FLAM_C SINE Alu -1 132 1 248 378 67 38 chrX 152125146 152125384 -10474546 - L2 LINE L2 -218 3054 2810 224 327 69 30 chrX 152125557 152125658 -10474272 + L2 LINE L2 2956 3060 -253 263 194 161 0 chrX 152125746 152125808 -10474122 - MER116 DNA Mariner -8 72 1 295 331 103 14 chrX 152125823 152125968 -10473962 + L2 LINE L2 3146 3303 -10 211 244 0 0 chrX 152125968 152126013 -10473917 + (TTA)n Simple_repeat Simple_repeat 3 47 0 456 327 157 36 chrX 152126046 152126438 -10473492 - L2 LINE L2 -158 3114 2771 1995 156 11 45 chrX 152126438 152126770 -10473160 - MLT1A1 LTR MaLR 0 365 46 1849 103 8 8 chrX 152126770 152127031 -10472899 + AluSx SINE Alu 43 303 -9 1995 156 11 45 chrX 152127031 152127076 -10472854 - MLT1A1 LTR MaLR -319 46 1 456 327 157 36 chrX 152127076 152127383 -10472547 - L2 LINE L2 -501 2771 2337 29 0 0 0 chrX 152127526 152127555 -10472375 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 152127891 152127913 -10472017 + AT_rich Low_complexity Low_complexity 1 22 0 181 54 0 54 chrX 152128475 152128512 -10471418 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 757 0 0 0 chrX 152129672 152129761 -10470169 + L1HS LINE L1 6067 6155 0 490 250 45 0 chrX 152130146 152130258 -10469672 - MER90 LTR ERV1 -16 559 443 1591 157 103 35 chrX 152130262 152130637 -10469293 - MLT1B LTR MaLR -6 373 2 984 230 106 35 chrX 152130662 152131066 -10468864 - MER90 LTR ERV1 -181 433 1 877 271 48 39 chrX 152131581 152131939 -10467991 + MLT1J1 LTR MaLR 54 414 -32 14142 230 53 19 chrX 152131952 152138060 -10461870 - L1PA15 LINE L1 -1 6815 63 191 338 0 29 chrX 152139772 152139840 -10460090 - MIR3 SINE MIR -5 203 138 312 302 0 0 chrX 152140038 152140124 -10459806 - MER31-int LTR ERV1 -741 4195 4110 607 255 26 74 chrX 152140190 152140461 -10459469 - MER31-int LTR ERV1 -840 4096 3839 901 210 48 21 chrX 152140530 152140716 -10459214 + MLT2B1 LTR ERVL 1 191 -329 276 213 0 0 chrX 152140727 152140788 -10459142 + (TA)n Simple_repeat Simple_repeat 2 62 0 297 287 0 0 chrX 152140863 152140971 -10458959 + (TA)n Simple_repeat Simple_repeat 1 108 0 301 333 0 0 chrX 152140978 152141068 -10458862 + L1MC4 LINE L1 6614 6703 -1339 251 322 0 0 chrX 152141072 152141162 -10458768 - L1MC4 LINE L1 -1339 6703 6614 686 232 0 6 chrX 152141163 152141344 -10458586 + (TA)n Simple_repeat Simple_repeat 1 180 0 220 39 0 0 chrX 152141344 152141370 -10458560 + (CA)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chrX 152141371 152141393 -10458537 + (GA)n Simple_repeat Simple_repeat 2 23 0 291 146 0 0 chrX 152141395 152141443 -10458487 + MLT2B1 LTR ERVL 465 512 -8 443 190 14 63 chrX 152141446 152141588 -10458342 - MER31-int LTR ERV1 -1166 3770 3636 3025 272 107 12 chrX 152142046 152142645 -10457285 - L1MEc LINE L1 -4618 1778 1237 4673 57 7 2 chrX 152142645 152143242 -10456688 - L1PA6 LINE L1 -4 6150 5551 3025 272 107 12 chrX 152143242 152143927 -10456003 - L1MEc LINE L1 -5159 1237 372 263 278 41 41 chrX 152145296 152145393 -10454537 - L2 LINE L2 -7 3265 3169 1019 250 51 58 chrX 152145634 152146185 -10453745 - L2 LINE L2 -5 3308 2781 313 336 24 8 chrX 152146198 152146323 -10453607 + MIR SINE MIR 5 131 -131 345 236 74 74 chrX 152146523 152146739 -10453191 + L2 LINE L2 3073 3288 -25 391 279 94 11 chrX 152147671 152147837 -10452093 + MIR SINE MIR 30 206 -56 231 345 11 0 chrX 152148080 152148167 -10451763 + L2 LINE L2 3226 3313 0 200 289 51 45 chrX 152148180 152148336 -10451594 + L2 LINE L2 2825 2981 -291 1130 177 80 74 chrX 152148597 152148984 -10450946 + MSTC LTR MaLR 3 428 0 357 331 44 15 chrX 152150364 152150500 -10449430 + L2 LINE L2 2696 2835 -479 287 276 161 0 chrX 152150552 152150639 -10449291 - MER63A DNA MER1_type -39 171 71 563 336 43 33 chrX 152150712 152151026 -10448904 + L2 LINE L2 2739 3057 -256 1923 86 8 0 chrX 152151076 152151343 -10448587 - L1PA8 LINE L1 -1 6171 5903 213 333 0 0 chrX 152151476 152151533 -10448397 + MIR3 SINE MIR 151 207 -1 234 167 104 0 chrX 152151594 152151642 -10448288 - L2 LINE L2 0 3313 3261 768 235 29 12 chrX 152152118 152152361 -10447569 - L1MA5 LINE L1 -1704 4442 4196 5437 176 28 13 chrX 152152361 152153197 -10446733 + L1MA5 LINE L1 4459 5280 -1020 183 42 0 0 chrX 152153197 152153221 -10446709 + (TAA)n Simple_repeat Simple_repeat 2 25 0 5437 176 28 13 chrX 152153221 152153861 -10446069 + L1MA5 LINE L1 5280 5909 -391 13875 144 35 16 chrX 152153861 152154724 -10445206 + Tigger1 DNA MER2_type 1 846 -1572 2235 104 0 0 chrX 152154724 152155021 -10444909 + AluSc SINE Alu 1 297 -12 13875 144 35 16 chrX 152155021 152156531 -10443399 + Tigger1 DNA MER2_type 846 2418 0 5437 176 28 13 chrX 152156531 152156584 -10443346 + L1MA5 LINE L1 5909 5960 -340 2042 113 98 15 chrX 152156584 152156920 -10443010 + THE1B LTR MaLR 1 364 0 5437 176 28 13 chrX 152156920 152157210 -10442720 + L1MA5 LINE L1 5960 6297 -3 331 314 68 104 chrX 152157298 152157446 -10442484 - L2 LINE L2 -668 2646 2494 2030 145 3 0 chrX 152157446 152157743 -10442187 + AluSx SINE Alu 1 298 -14 331 314 68 104 chrX 152157743 152157948 -10441982 - L2 LINE L2 -820 2494 2306 520 322 98 50 chrX 152158526 152158883 -10441047 - L2 LINE L2 -1027 2287 1914 247 309 109 9 chrX 152160623 152160733 -10439197 + L2 LINE L2 2199 2319 -995 290 247 71 0 chrX 152161285 152161370 -10438560 + L1MC4 LINE L1 6613 6703 -1339 285 232 0 0 chrX 152161378 152161447 -10438483 + (TA)n Simple_repeat Simple_repeat 2 70 0 2247 98 0 7 chrX 152161476 152161771 -10438159 - AluSx SINE Alu -19 293 1 1168 294 62 31 chrX 152161805 152162227 -10437703 + LTR16A LTR ERVL 16 450 0 375 347 47 77 chrX 152162713 152163041 -10436889 - L2 LINE L2 -2 3270 2955 1641 118 8 28 chrX 152163041 152163296 -10436634 + AluSx SINE Alu 51 300 -12 375 347 47 77 chrX 152163296 152163368 -10436562 - L2 LINE L2 -317 2955 2882 2233 98 3 0 chrX 152163552 152163838 -10436092 + AluSp SINE Alu 3 289 -24 438 20 0 0 chrX 152163840 152163891 -10436039 + (TA)n Simple_repeat Simple_repeat 1 51 0 324 0 0 0 chrX 152163890 152163926 -10436004 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 3921 144 12 9 chrX 152164127 152164802 -10435128 + L1MA5 LINE L1 5559 6235 -65 229 171 171 0 chrX 152164838 152164926 -10435004 + (CATTA)n Simple_repeat Simple_repeat 5 107 0 197 171 12 49 chrX 152164931 152165013 -10434917 + (CAATA)n Simple_repeat Simple_repeat 1 79 0 200 167 21 0 chrX 152165141 152165189 -10434741 + (CAATA)n Simple_repeat Simple_repeat 4 52 0 385 125 10 87 chrX 152165202 152165306 -10434624 + L1MA5 LINE L1 6200 6295 -5 2868 6 0 0 chrX 152165501 152165812 -10434118 + AluY SINE Alu 1 311 0 345 310 26 26 chrX 152165844 152165957 -10433973 - L2 LINE L2 0 3272 3160 79 82 0 0 chrX 152166756 152166940 -10432990 + AT_rich Low_complexity Low_complexity 1 184 0 289 233 121 26 chrX 152167091 152167207 -10432723 + MLT1J LTR MaLR 316 442 -69 381 225 135 55 chrX 152167549 152167749 -10432181 - L1MC4a LINE L1 -1895 5913 5698 363 268 45 0 chrX 152167808 152167920 -10432010 - MER97c DNA MER1_type? -918 172 56 506 293 106 8 chrX 152168002 152168258 -10431672 - L1MC4a LINE L1 -2211 5597 5317 * 1165 246 59 17 chrX 152168255 152168613 -10431317 - L1MB7 LINE L1 -16 6168 5796 2712 221 34 22 chrX 152168621 152169335 -10430595 - L1MB7 LINE L1 -789 5357 4636 453 211 6 68 chrX 152169364 152169442 -10430488 - L1MC4a LINE L1 -1016 5130 5066 2304 79 3 3 chrX 152169442 152169734 -10430196 + AluY SINE Alu 2 293 -18 453 211 6 68 chrX 152169734 152169816 -10430114 - L1MC4a LINE L1 -1080 5066 4980 2016 174 23 3 chrX 152169824 152170210 -10429720 - L1PA16 LINE L1 -9 6157 5764 3693 58 7 0 chrX 152170218 152170683 -10429247 - L1PA7 LINE L1 -4 6150 5683 1799 172 16 0 chrX 152170689 152171003 -10428927 - L1PA16 LINE L1 -388 5778 5460 * 16794 184 27 8 chrX 152171002 152171456 -10428474 + L1PA13 LINE L1 1747 2191 -3972 2082 125 3 7 chrX 152171456 152171761 -10428169 - AluSx SINE Alu -8 304 1 16794 184 27 8 chrX 152171761 152175637 -10424293 + L1PA13 LINE L1 2191 6156 -7 407 160 64 0 chrX 152175649 152175743 -10424187 - L1M2 LINE L1 -838 5459 5360 388 320 119 15 chrX 152175982 152176394 -10423536 - L1MC4a LINE L1 -2172 3974 3520 370 320 13 26 chrX 152176542 152176695 -10423235 - MER5A DNA MER1_type -12 177 27 1204 189 0 10 chrX 152176735 152176941 -10422989 - AluJo SINE Alu -22 290 87 306 50 0 0 chrX 152177154 152177194 -10422736 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 330 82 15 chrX 152177661 152177791 -10422139 - MIR3 SINE MIR -47 161 23 285 29 0 0 chrX 152178368 152178402 -10421528 + (CA)n Simple_repeat Simple_repeat 1 34 0 312 296 64 8 chrX 152178704 152178829 -10421101 - MIR SINE MIR -50 212 81 612 263 17 17 chrX 152178938 152179113 -10420817 - MER5B DNA MER1_type -3 175 1 241 358 12 0 chrX 152179327 152179408 -10420522 - L2 LINE L2 -213 3059 2978 2035 131 62 20 chrX 152179913 152180271 -10419659 + THE1C LTR MaLR 1 373 -2 360 136 34 23 chrX 152180487 152180575 -10419355 + C-rich Low_complexity Low_complexity 2 90 0 799 257 97 9 chrX 152180853 152181079 -10418851 + MER102a DNA MER1_type 75 320 -10 210 224 0 0 chrX 152181606 152181655 -10418275 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 450 273 74 58 chrX 152181699 152181959 -10417971 - L1MC/D LINE L1 -312 5809 5549 1499 108 5 5 chrX 152182079 152182292 -10417638 - AluSg/x SINE Alu -4 308 96 230 340 67 74 chrX 152182641 152183044 -10416886 - L2 LINE L2 -657 2657 2258 262 295 79 44 chrX 152183666 152183893 -10416037 + L1ME4a LINE L1 5378 5612 -509 450 205 57 0 chrX 152183964 152184086 -10415844 + L1ME4a LINE L1 5750 5878 -243 287 368 22 15 chrX 152184498 152184634 -10415296 - MIR3 SINE MIR -63 145 9 267 415 0 21 chrX 152184790 152184932 -10414998 - L2 LINE L2 -13 3259 3121 311 320 48 0 chrX 152187921 152188046 -10411884 + MIR SINE MIR 78 208 -54 389 169 117 0 chrX 152188089 152188166 -10411764 + MLT1B LTR MaLR 1 86 -381 1038 174 43 122 chrX 152188240 152188568 -10411362 + MLT1B LTR MaLR 89 390 0 442 283 0 29 chrX 152188722 152188860 -10411070 + MER94 DNA DNA 1 134 0 1944 138 48 0 chrX 152189667 152189956 -10409974 + AluSq SINE Alu 1 303 -10 382 299 158 33 chrX 152190104 152190288 -10409642 + MIR SINE MIR 2 208 -54 219 69 0 0 chrX 152190950 152190979 -10408951 + (A)n Simple_repeat Simple_repeat 1 29 0 327 321 0 9 chrX 152191317 152191423 -10408507 - MIR3 SINE MIR -9 199 95 346 378 70 5 chrX 152191678 152191892 -10408038 + MIR SINE MIR 30 256 -6 252 212 48 54 chrX 152192587 152192704 -10407226 - L1ME LINE L1 -306 5855 5746 457 288 197 5 chrX 152193148 152193346 -10406584 + MIR SINE MIR 21 256 -6 24 0 0 0 chrX 152193493 152193517 -10406413 + AT_rich Low_complexity Low_complexity 1 24 0 360 329 0 36 chrX 152194492 152194629 -10405301 + L2 LINE L2 3136 3267 -5 2380 277 60 36 chrX 152194723 152195697 -10404233 - L2 LINE L2 -136 3177 2183 1207 232 140 20 chrX 152195699 152196048 -10403882 + MLT1C LTR MaLR 1 391 -76 1709 270 86 12 chrX 152196082 152196678 -10403252 - L2 LINE L2 -1131 2183 1544 204 158 0 0 chrX 152196696 152196734 -10403196 + (TATAG)n Simple_repeat Simple_repeat 5 42 0 194 290 43 21 chrX 152196734 152196827 -10403103 + MIR SINE MIR 166 260 -2 291 287 201 35 chrX 152196888 152197062 -10402868 - L2 LINE L2 -1078 2236 2034 310 341 0 48 chrX 152197869 152197995 -10401935 + MER5A DNA MER1_type 70 189 0 250 306 162 9 chrX 152198192 152198303 -10401627 + L2 LINE L2 3185 3312 -1 740 276 106 50 chrX 152198309 152199255 -10400675 + L1ME2 LINE L1 4877 5880 -284 703 185 121 19 chrX 152199635 152199792 -10400138 + FRAM SINE Alu 1 168 -8 4310 44 6 7 chrX 152199936 152200478 -10399452 + L1PA5 LINE L1 5607 6147 -7 507 279 63 1 chrX 152200647 152200835 -10399095 - MIR3 SINE MIR -3 205 1 181 295 95 11 chrX 152200849 152200944 -10398986 + L2 LINE L2 2982 3084 -229 185 333 0 33 chrX 152201212 152201302 -10398628 - L2 LINE L2 -12 3301 3215 589 273 12 35 chrX 152201372 152201544 -10398386 - MIR SINE MIR -94 168 1 24 32 0 0 chrX 152202070 152202101 -10397829 + AT_rich Low_complexity Low_complexity 1 31 0 321 233 1 3 chrX 152203266 152203388 -10396542 + L1 LINE L1 4490 4610 -1536 2214 66 49 21 chrX 152203851 152204138 -10395792 + AluY SINE Alu 4 298 -13 417 39 0 0 chrX 152204138 152204167 -10395763 + (CA)n Simple_repeat Simple_repeat 1 80 0 417 39 0 0 chrX 152204167 152204218 -10395712 + (CA)n Simple_repeat Simple_repeat 2 52 0 1171 29 0 0 chrX 152204344 152204481 -10395449 - L1PA3 LINE L1 -3 6152 6016 689 287 76 23 chrX 152204528 152204831 -10395099 + L2 LINE L2 2995 3313 0 1427 276 63 34 chrX 152204982 152205580 -10394350 + L2 LINE L2 2698 3313 0 596 244 67 44 chrX 152205587 152205857 -10394073 + L1ME4a LINE L1 5602 5877 -244 1351 111 5 5 chrX 152206993 152207201 -10392729 - L1PA13 LINE L1 -3 6160 5953 242 320 165 0 chrX 152207923 152208026 -10391904 - L3 LINE CR1 -490 1087 968 1019 224 14 14 chrX 152208173 152208454 -10391476 + L1MD2 LINE L1 4964 5244 -902 418 212 27 11 chrX 152208456 152208846 -10391084 + (TA)n Simple_repeat Simple_repeat 1 396 0 321 260 15 11 chrX 152208867 152209149 -10390781 + (TA)n Simple_repeat Simple_repeat 1 283 0 267 322 7 7 chrX 152209161 152209307 -10390623 + (TA)n Simple_repeat Simple_repeat 1 146 0 309 256 8 0 chrX 152209324 152209810 -10390120 + (TA)n Simple_repeat Simple_repeat 1 490 0 329 240 23 0 chrX 152209831 152210006 -10389924 + (TA)n Simple_repeat Simple_repeat 1 179 0 3930 192 58 54 chrX 152210079 152210927 -10389003 + L1MD2 LINE L1 5257 6100 -259 267 31 0 0 chrX 152210927 152210959 -10388971 + (CA)n Simple_repeat Simple_repeat 2 33 0 3930 192 58 54 chrX 152210959 152210981 -10388949 + L1MD2 LINE L1 6100 6120 -239 262 105 0 0 chrX 152210981 152211019 -10388911 - tRNA-Cys-TGC tRNA tRNA -37 38 1 3930 192 58 54 chrX 152211019 152211207 -10388723 + L1MD2 LINE L1 6120 6358 -1 296 298 25 50 chrX 152213233 152213354 -10386576 + MIR SINE MIR 2 119 -143 317 176 0 0 chrX 152213649 152213717 -10386213 + HAL1b LINE L1 735 802 -546 409 238 64 25 chrX 152213799 152214001 -10385929 + HAL1b LINE L1 952 1161 -187 5492 132 27 6 chrX 152214333 152214980 -10384950 - L1PA16 LINE L1 -3 6163 5531 450 0 0 0 chrX 152214980 152215030 -10384900 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2226 98 0 3 chrX 152215030 152215315 -10384615 - AluSx SINE Alu -28 284 1 5492 132 27 6 chrX 152215315 152215552 -10384378 - L1PA16 LINE L1 -634 5532 5259 337 263 10 40 chrX 152215563 152215662 -10384268 + MIR3 SINE MIR 15 110 -98 200 229 133 36 chrX 152215850 152215933 -10383997 - MIR SINE MIR -50 212 122 460 296 92 15 chrX 152216555 152216761 -10383169 - MIR SINE MIR 0 262 41 274 330 21 77 chrX 152217008 152217241 -10382689 - L3 LINE CR1 -27 1550 1331 8908 196 36 30 chrX 152217241 152219886 -10380044 + L1PA15-16 LINE L1 1310 3975 -2874 4466 228 33 24 chrX 152219879 152220927 -10379003 + L1MA2 LINE L1 12 1069 -6496 * 321 224 0 0 chrX 152220944 152221011 -10378919 + L1MA2 LINE L1 1041 1107 -6458 * 8005 176 24 4 chrX 152221008 152223475 -10376455 + L1MA2 LINE L1 2293 4810 -2755 3873 127 3 13 chrX 152223473 152224220 -10375710 + L1MA2 LINE L1 6528 7269 -454 * 1883 9 0 0 chrX 152224216 152224431 -10375499 - L1P LINE L1 -1554 4592 4378 * 2331 145 49 9 chrX 152224431 152224878 -10375052 + L1MA2 LINE L1 7258 7723 0 7975 204 42 3 chrX 152224892 152226705 -10373225 + L1PA16 LINE L1 3254 5209 -957 441 0 0 0 chrX 152226705 152226754 -10373176 + (CA)n Simple_repeat Simple_repeat 1 49 0 7975 204 42 3 chrX 152226754 152227742 -10372188 + L1PA16 LINE L1 5209 6157 -9 618 317 158 32 chrX 152227806 152228244 -10371686 - L3 LINE CR1 -349 1228 736 265 382 60 33 chrX 152228966 152229515 -10370415 - L2 LINE L2 -423 2891 2262 940 317 108 59 chrX 152229531 152229605 -10370325 + L3 LINE CR1 718 787 -790 1438 277 18 18 chrX 152229605 152230053 -10369877 - LTR16A LTR ERVL -2 448 1 940 317 108 59 chrX 152230053 152230794 -10369136 + L3 LINE CR1 787 1573 -4 2120 92 14 14 chrX 152230829 152231123 -10368807 - AluSq SINE Alu -4 309 16 879 234 15 10 chrX 152231585 152231786 -10368144 - MER3 DNA MER1_type -5 204 3 183 186 0 0 chrX 152233431 152233474 -10366456 + (TG)n Simple_repeat Simple_repeat 2 44 0 2082 110 4 0 chrX 152233575 152233856 -10366074 + AluSc SINE Alu 3 284 -25 328 254 50 53 chrX 152234556 152234684 -10365246 + MER5B DNA MER1_type 19 144 -45 5361 155 51 31 chrX 152234963 152236088 -10363842 + L1MA4 LINE L1 4133 5234 -1066 1699 159 17 27 chrX 152236088 152236384 -10363546 + AluJo SINE Alu 3 295 -17 5361 155 51 31 chrX 152236384 152236909 -10363021 + L1MA4 LINE L1 5234 5747 -553 420 20 0 0 chrX 152236909 152236958 -10362972 + (CA)n Simple_repeat Simple_repeat 2 50 0 5361 155 51 31 chrX 152236958 152237411 -10362519 + L1MA4 LINE L1 5747 6295 -5 341 327 44 38 chrX 152237621 152237780 -10362150 + MIR3 SINE MIR 38 197 -11 447 200 0 11 chrX 152238891 152238986 -10360944 - L1MC2 LINE L1 -100 6244 6151 3464 196 38 17 chrX 152239002 152240449 -10359481 + L1MC2 LINE L1 4440 5907 -437 354 263 46 57 chrX 152240661 152240836 -10359094 + Charlie8 DNA MER1_type 2244 2416 -1 268 337 11 0 chrX 152241046 152241138 -10358792 - L2 LINE L2 -923 2391 2299 4289 192 64 13 chrX 152241315 152241488 -10358442 - L1MA10 LINE L1 -2 6332 6169 180 111 0 0 chrX 152241488 152241515 -10358415 + (TG)n Simple_repeat Simple_repeat 1 27 0 4289 192 64 13 chrX 152241515 152242356 -10357574 - L1MA10 LINE L1 -165 6169 5266 338 217 36 0 chrX 152242356 152242439 -10357491 - Tigger5 DNA MER2_type -1 2322 2237 249 250 0 18 chrX 152242449 152242505 -10357425 - Tigger5 DNA MER2_type -2268 55 1 598 174 0 8 chrX 152242505 152242626 -10357304 - L1MA10 LINE L1 -878 5268 5149 962 346 38 30 chrX 152242639 152243136 -10356794 - L2 LINE L2 -1531 1783 1283 21 36 0 0 chrX 152243203 152243231 -10356699 + AT_rich Low_complexity Low_complexity 1 28 0 254 250 238 0 chrX 152243253 152243337 -10356593 + L2 LINE L2 3168 3271 -1 230 315 225 31 chrX 152243436 152243760 -10356170 - L2 LINE L2 -2404 910 524 1995 200 115 0 chrX 152243922 152244373 -10355557 + MLT1D LTR MaLR 1 503 -2 380 191 34 22 chrX 152245169 152245258 -10354672 + MARNA DNA Mariner 168 257 -329 650 297 64 93 chrX 152245590 152246033 -10353897 - L2 LINE L2 0 3272 2840 1717 180 7 86 chrX 152246033 152246438 -10353492 + MLT1A2 LTR MaLR 1 373 -1 650 297 64 93 chrX 152246438 152246500 -10353430 - L2 LINE L2 -432 2840 2778 341 304 8 40 chrX 152247848 152247973 -10351957 + MIR SINE MIR 34 154 -108 196 122 18 28 chrX 152248311 152248353 -10351577 - MIR SINE MIR -63 145 112 280 169 68 0 chrX 152248382 152248441 -10351489 + L1MA9 LINE L1 6228 6290 -22 225 0 0 0 chrX 152248682 152248707 -10351223 + (T)n Simple_repeat Simple_repeat 1 25 0 384 22 0 0 chrX 152249566 152249611 -10350319 + (CA)n Simple_repeat Simple_repeat 2 46 0 492 221 0 0 chrX 152249692 152249805 -10350125 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 245 255 0 43 chrX 152249805 152249899 -10350031 + L1MC4 LINE L1 6614 6703 -1339 309 183 0 0 chrX 152249931 152249991 -10349939 + (CA)n Simple_repeat Simple_repeat 2 61 0 711 223 162 5 chrX 152249991 152250188 -10349742 + L2 LINE L2 2705 2932 -382 576 266 38 19 chrX 152250277 152250435 -10349495 + MIR SINE MIR 4 164 -98 1050 138 13 0 chrX 152250437 152250589 -10349341 + AluSg/x SINE Alu 134 287 -23 22 0 0 0 chrX 152250589 152250611 -10349319 + AT_rich Low_complexity Low_complexity 1 22 0 1173 312 175 30 chrX 152250720 152251482 -10348448 + L3 LINE CR1 483 1412 -165 2817 174 22 9 chrX 152251482 152252027 -10347903 + L1PB4 LINE L1 5598 6149 -7 1173 312 175 30 chrX 152252027 152252214 -10347716 + L3 LINE CR1 1412 1570 -7 589 221 262 0 chrX 152252820 152253064 -10346866 + MER69B DNA AcHobo 585 892 -334 2272 182 70 17 chrX 152253064 152253581 -10346349 - L1MC2 LINE L1 -9 6335 5792 1568 211 59 12 chrX 152253582 152254091 -10345839 - L1MC2 LINE L1 -743 5403 5058 437 218 214 29 chrX 152254093 152254368 -10345562 + MER69B DNA AcHobo 901 1226 0 193 294 35 35 chrX 152254635 152254720 -10345210 + L2 LINE L2 2421 2505 -809 247 342 148 0 chrX 152254764 152254913 -10345017 + L2 LINE L2 2914 3084 -188 434 289 200 12 chrX 152255116 152255545 -10344385 - L1MC/D LINE L1 -527 5594 5316 2314 141 33 0 chrX 152255673 152256063 -10343867 + MER57A LTR ERV1 1 403 0 196 271 0 0 chrX 152256166 152256214 -10343716 + L2 LINE L2 3146 3193 -79 1003 191 91 118 chrX 152256214 152256764 -10343166 + LTR49 LTR ERV1 5 539 -56 929 174 41 0 chrX 152256773 152256968 -10342962 - L1MA6 LINE L1 0 6300 6098 383 88 0 35 chrX 152256968 152257016 -10342914 - L1MA5 LINE L1 -426 5874 5827 * 3799 169 19 12 chrX 152257014 152257772 -10342158 + L1 LINE L1 4586 5348 -798 195 333 69 0 chrX 152257839 152257911 -10342019 + L2 LINE L2 3226 3302 -11 244 294 0 0 chrX 152258031 152258082 -10341848 - L2 LINE L2 -88 3184 3134 194 350 114 0 chrX 152259057 152259180 -10340750 - L2 LINE L2 -222 3050 2914 35 41 0 0 chrX 152260055 152260104 -10339826 + AT_rich Low_complexity Low_complexity 1 49 0 2239 160 63 10 chrX 152260655 152261067 -10338863 + Tigger2a DNA MER2_type 1 434 0 381 275 38 81 chrX 152261093 152261304 -10338626 - MIR SINE MIR -58 204 3 619 328 67 54 chrX 152261306 152261767 -10338163 - L2 LINE L2 -442 2872 2406 472 255 113 7 chrX 152262593 152262734 -10337196 + MIR SINE MIR 2 157 -105 181 226 167 36 chrX 152262801 152262885 -10337045 - L2 LINE L2 -10 3303 3209 26 50 0 0 chrX 152263070 152263110 -10336820 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chrX 152263842 152263873 -10336057 + AT_rich Low_complexity Low_complexity 1 31 0 1765 211 13 13 chrX 152266359 152266748 -10333182 + L1MA10 LINE L1 4578 4966 -1180 2140 159 38 33 chrX 152266748 152267293 -10332637 + MLT2A2 LTR ERVL 1 554 0 5887 166 14 20 chrX 152267297 152268663 -10331267 + L1MA10 LINE L1 4966 6323 -11 406 312 52 65 chrX 152268721 152268974 -10330956 + HAL1 LINE L1 1155 1410 -1097 1006 198 110 61 chrX 152268974 152269106 -10330824 + MER2 DNA MER2_type 1 125 -219 1789 147 16 41 chrX 152269106 152269426 -10330504 - AluSx SINE Alu 0 312 1 1006 198 110 61 chrX 152269426 152269621 -10330309 + MER2 DNA MER2_type 125 344 0 406 312 52 65 chrX 152269621 152269938 -10329992 + HAL1 LINE L1 1410 1718 -789 22 0 0 0 chrX 152270004 152270026 -10329904 + AT_rich Low_complexity Low_complexity 1 22 0 640 299 48 22 chrX 152270822 152271053 -10328877 - MLT1J2 LTR MaLR -209 241 5 414 0 0 0 chrX 152271414 152271460 -10328470 + (CA)n Simple_repeat Simple_repeat 2 47 0 404 169 56 6 chrX 152271617 152271777 -10328153 + (TA)n Simple_repeat Simple_repeat 2 169 0 356 301 95 40 chrX 152271857 152272182 -10327748 + L1M4 LINE L1 2799 3141 -3005 500 345 60 40 chrX 152273724 152274023 -10325907 + L2 LINE L2 2968 3272 0 219 348 33 33 chrX 152274436 152274528 -10325402 + MIR SINE MIR 2 93 -169 303 216 49 39 chrX 152274666 152274768 -10325162 + L1M4 LINE L1 5265 5367 -779 190 159 14 130 chrX 152275098 152275167 -10324763 - L2 LINE L2 -27 3286 3226 382 388 30 0 chrX 152276428 152276593 -10323337 - MIR3 SINE MIR -9 199 30 704 225 80 38 chrX 152276847 152277060 -10322870 + MER58A DNA MER1_type 2 223 -1 597 263 92 48 chrX 152277662 152277955 -10321975 - HAL1 LINE L1 -629 1878 1573 2081 152 13 43 chrX 152278379 152278743 -10321187 - MLT1B LTR MaLR -5 385 32 1442 217 3 30 chrX 152278743 152279047 -10320883 + AluJb SINE Alu 1 296 -16 2081 152 13 43 chrX 152279047 152279078 -10320852 - MLT1B LTR MaLR -358 32 2 22 35 0 0 chrX 152280604 152280633 -10319297 + AT_rich Low_complexity Low_complexity 1 29 0 658 259 68 35 chrX 152281454 152281791 -10318139 + LTR35 LTR ERV1 339 618 0 619 277 235 26 chrX 152282165 152282624 -10317306 - LTR67 LTR ERVL 0 557 3 2300 143 20 0 chrX 152282707 152283064 -10316866 + THE1B LTR MaLR 1 364 0 8311 136 48 41 chrX 152283065 152284627 -10315303 + THE1B-int LTR MaLR 2 1574 -6 2582 118 3 0 chrX 152284629 152284992 -10314938 + THE1B LTR MaLR 1 364 0 1128 256 16 3 chrX 152286071 152286376 -10313554 + L1M4 LINE L1 4728 5036 -1110 1938 189 20 0 chrX 152286920 152287312 -10312618 + L1MB2 LINE L1 5479 5878 -293 649 231 31 98 chrX 152287433 152287689 -10312241 + L1MB2 LINE L1 5888 6126 -45 8446 179 79 30 chrX 152287807 152289742 -10310188 + L1MC3 LINE L1 5754 7782 -3 1245 178 37 121 chrX 152289842 152290440 -10309490 + L1M4 LINE L1 5098 5643 -535 1889 137 139 16 chrX 152290440 152290821 -10309109 + MSTA LTR MaLR 1 428 0 4399 185 32 13 chrX 152290821 152291660 -10308270 + MSTA-int LTR MaLR 1 855 -796 * 5349 162 19 14 chrX 152291657 152292611 -10307319 + L1PB1 LINE L1 4835 5798 -353 987 137 0 0 chrX 152292611 152292772 -10307158 + (CA)n Simple_repeat Simple_repeat 2 162 0 5349 162 19 14 chrX 152292772 152293120 -10306810 + L1PB1 LINE L1 5798 6143 -8 295 371 30 38 chrX 152293689 152293821 -10306109 - L2 LINE L2 -4 3268 3138 317 250 54 18 chrX 152293862 152293974 -10305956 + MIR3 SINE MIR 82 197 -11 501 268 74 26 chrX 152294429 152294619 -10305311 + MIR SINE MIR 15 213 -49 549 227 206 7 chrX 152294850 152294991 -10304939 - MER5A DNA MER1_type 0 189 21 344 229 45 67 chrX 152295493 152295524 -10304406 + L1MC/D LINE L1 5311 5341 -2467 1609 205 86 30 chrX 152295524 152295702 -10304228 + MSTA LTR MaLR 1 167 -261 2339 92 0 7 chrX 152295702 152296008 -10303922 + AluSx SINE Alu 1 304 -8 1609 205 86 30 chrX 152296008 152296234 -10303696 + MSTA LTR MaLR 167 428 0 8460 195 24 5 chrX 152296234 152297854 -10302076 + MSTA-int LTR MaLR 1 1650 -1 2112 167 86 2 chrX 152297855 152298250 -10301680 + MSTA LTR MaLR 1 428 0 344 229 45 67 chrX 152298250 152298394 -10301536 + L1MC/D LINE L1 5339 5485 -2323 708 261 55 8 chrX 152298535 152298788 -10301142 + L1MC/D LINE L1 5510 5774 -2034 43210 29 21 1 chrX 152300468 152306501 -10293429 + L1HS LINE L1 1 6155 0 231 133 0 0 chrX 152306502 152306547 -10293383 + (A)n Simple_repeat Simple_repeat 1 45 0 346 270 118 56 chrX 152307310 152307580 -10292350 + L1ME LINE L1 4747 5033 -1113 487 281 57 67 chrX 152307828 152307938 -10291992 + L1ME LINE L1 5386 5496 -625 817 184 180 14 chrX 152307938 152308216 -10291714 + MER33 DNA MER1_type 1 324 0 487 281 57 67 chrX 152308216 152308493 -10291437 + L1ME LINE L1 5496 5769 -352 315 0 0 0 chrX 152308595 152308630 -10291300 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chrX 152308748 152308789 -10291141 + AT_rich Low_complexity Low_complexity 1 41 0 2043 158 35 25 chrX 152309164 152309568 -10290362 - L1PB4 LINE L1 -1 6155 5748 3278 173 39 29 chrX 152309573 152310837 -10289093 - L1PB4 LINE L1 -328 5828 4566 987 281 112 33 chrX 152313504 152313632 -10286298 + L1M4 LINE L1 2122 2238 -3908 2146 96 0 11 chrX 152313632 152313946 -10285984 + AluSc SINE Alu 2 312 0 987 281 112 33 chrX 152313946 152315504 -10284426 + L1M4 LINE L1 2238 3987 -2159 716 187 14 22 chrX 152315541 152315680 -10284250 + AluJo SINE Alu 1 138 -174 512 230 0 26 chrX 152315829 152315942 -10283988 + MER92C LTR ERV1 1 110 -444 426 256 48 126 chrX 152316042 152316500 -10283430 + L1M4 LINE L1 4052 4452 -1694 399 31 62 15 chrX 152316500 152316565 -10283365 + L1MA2 LINE L1 6237 6304 0 426 256 48 126 chrX 152316565 152316715 -10283215 + L1M4 LINE L1 4452 4612 -1534 387 291 35 14 chrX 152316730 152316871 -10283059 + L1ME3 LINE L1 474 617 -5913 1359 278 120 27 chrX 152317326 152318242 -10281688 + L1ME3 LINE L1 1421 2421 -4119 620 246 152 6 chrX 152318244 152318516 -10281414 + L1ME3 LINE L1 5251 5557 -983 641 189 52 7 chrX 152318557 152318710 -10281220 - L1ME1 LINE L1 -271 5895 5736 * 2082 237 107 22 chrX 152318708 152319387 -10280543 + L1ME3 LINE L1 5588 6365 -191 1738 137 32 4 chrX 152319387 152319665 -10280265 + AluSc SINE Alu 1 286 -23 2082 237 107 22 chrX 152319665 152319874 -10280056 + L1ME3 LINE L1 6365 6555 -1 243 79 0 0 chrX 152319929 152319967 -10279963 + (TG)n Simple_repeat Simple_repeat 1 38 0 591 264 140 55 chrX 152319992 152320670 -10279260 + L1ME LINE L1 4624 5359 -787 334 261 45 38 chrX 152320665 152320822 -10279108 + L1ME3A LINE L1 5963 6120 -50 * 424 265 133 39 chrX 152321105 152321286 -10278644 + MIR SINE MIR 61 258 -4 257 297 138 21 chrX 152321376 152321521 -10278409 + MIR SINE MIR 81 242 -20 1783 197 109 0 chrX 152321706 152322092 -10277838 + MSTA LTR MaLR 1 428 0 7962 187 51 4 chrX 152322092 152323668 -10276262 + MSTA-int LTR MaLR 1 1651 0 1606 179 151 39 chrX 152323668 152324053 -10275877 + MSTA LTR MaLR 1 428 0 5214 184 38 4 chrX 152324063 152325703 -10274227 + L1PB4 LINE L1 4453 6156 0 195 184 145 79 chrX 152325873 152325949 -10273981 + MIR SINE MIR 72 152 -110 * 399 314 87 39 chrX 152325940 152326169 -10273761 - MIR SINE MIR -2 260 21 256 291 150 39 chrX 152326768 152326796 -10273134 + L1ME LINE L1 5546 5570 -551 2358 190 65 8 chrX 152326796 152327285 -10272645 - LTR53 LTR ERVL -2 517 1 256 291 150 39 chrX 152327285 152327490 -10272440 + L1ME LINE L1 5570 5805 -316 449 269 49 24 chrX 152327574 152327753 -10272177 + HAL1b LINE L1 1170 6117 -4 14156 172 63 10 chrX 152327871 152330712 -10269218 + L1PB2 LINE L1 6 2696 -4171 360 0 0 0 chrX 152330712 152330752 -10269178 + (CA)n Simple_repeat Simple_repeat 2 41 0 14156 172 63 10 chrX 152330752 152331143 -10268787 + L1PB2 LINE L1 2696 3065 -3802 2553 74 0 0 chrX 152331143 152331454 -10268476 + AluY SINE Alu 1 311 0 14156 172 63 10 chrX 152331454 152331971 -10267959 + L1PB2 LINE L1 3065 3553 -3314 2054 138 3 3 chrX 152331971 152332282 -10267648 + AluY SINE Alu 1 311 0 14156 172 63 10 chrX 152332282 152335054 -10264876 + L1PB2 LINE L1 3553 6867 0 1069 193 17 105 chrX 152335233 152335529 -10264401 + MLT1D LTR MaLR 236 505 0 1230 189 19 45 chrX 152336232 152336496 -10263434 + MLT1A1 LTR MaLR 5 261 -104 1097 286 25 4 chrX 152337217 152337493 -10262437 - LTR16B LTR ERVL -168 296 15 3222 268 91 21 chrX 152337509 152337774 -10262156 - L2 LINE L2 -459 2855 2610 2143 166 40 8 chrX 152337774 152338154 -10261776 - MSTD LTR MaLR 0 396 5 3222 268 91 21 chrX 152338154 152338964 -10260966 - L2 LINE L2 -704 2610 1705 453 370 77 27 chrX 152339046 152339708 -10260222 + L1PB4 LINE L1 14 517 -6333 3892 240 42 88 chrX 152340258 152341869 -10258061 + L1PB4 LINE L1 1170 2706 -4143 4978 170 55 9 chrX 152341870 152343377 -10256553 + L1PB4 LINE L1 5289 6858 -1 937 229 75 0 chrX 152343377 152343578 -10256352 - MER58A DNA MER1_type -8 216 1 246 343 0 0 chrX 152343623 152343693 -10256237 - L2 LINE L2 -15 3257 3188 223 222 81 61 chrX 152344586 152344685 -10255245 + MIR SINE MIR 86 186 -76 441 301 48 30 chrX 152344807 152344973 -10254957 - LTR67 LTR ERVL -269 288 120 680 216 278 70 chrX 152345107 152345274 -10254656 + MLT1E2 LTR MaLR 52 183 -443 2177 101 3 0 chrX 152345274 152345560 -10254370 + AluSc SINE Alu 1 287 -22 680 216 278 70 chrX 152345560 152345738 -10254192 + MLT1E2 LTR MaLR 183 323 -303 1919 185 62 55 chrX 152345738 152346225 -10253705 + LTR22B LTR ERVK 3 492 0 680 216 278 70 chrX 152346225 152346266 -10253664 + MLT1E2 LTR MaLR 323 520 -106 5333 157 68 15 chrX 152346268 152347933 -10251997 + L1PB1 LINE L1 4021 5817 -334 378 0 0 0 chrX 152347933 152347975 -10251955 + (CA)n Simple_repeat Simple_repeat 2 43 0 5333 157 68 15 chrX 152347975 152348328 -10251602 + L1PB1 LINE L1 5817 6150 -1 269 309 0 36 chrX 152348349 152348433 -10251497 - MIR SINE MIR -83 125 45 21 36 0 0 chrX 152348456 152348484 -10251446 + AT_rich Low_complexity Low_complexity 1 28 0 1250 270 80 11 chrX 152349706 152350135 -10249795 + L2 LINE L2 2524 2977 -336 575 333 63 10 chrX 152350152 152350452 -10249478 - MER68 LTR ERV1 -24 538 223 728 229 37 134 chrX 152350943 152351345 -10248585 + L2 LINE L2 2949 3311 -2 387 138 0 15 chrX 152351360 152351425 -10248505 - MIR SINE MIR -109 153 90 1121 235 8 12 chrX 152351667 152351922 -10248008 - MIR SINE MIR 0 262 9 2012 142 33 8 chrX 152352205 152352565 -10247365 + L1PA16 LINE L1 5789 6157 -9 387 0 0 0 chrX 152352633 152352676 -10247254 + (TA)n Simple_repeat Simple_repeat 2 44 0 24 53 0 0 chrX 152353078 152353116 -10246814 + AT_rich Low_complexity Low_complexity 1 38 0 258 105 0 0 chrX 152353383 152353421 -10246509 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 259 316 181 0 chrX 152355271 152355404 -10244526 + MIR3 SINE MIR 46 202 -6 1225 238 154 23 chrX 152356645 152357086 -10242844 + MLT1D LTR MaLR 2 500 -5 197 231 10 135 chrX 152357955 152358059 -10241871 + MIR SINE MIR 61 151 -111 3868 182 87 34 chrX 152358144 152359395 -10240535 - L1MA8 LINE L1 0 6291 4904 2017 130 0 7 chrX 152359395 152359679 -10240251 - AluSx SINE Alu -30 282 1 3868 182 87 34 chrX 152359679 152360158 -10239772 - L1MA8 LINE L1 -1387 4904 4452 270 298 53 32 chrX 152360158 152360252 -10239678 - L2 LINE L2 -224 3048 2953 895 285 181 9 chrX 152362558 152362983 -10236947 - L2 LINE L2 -5 3308 2811 704 176 93 16 chrX 152363092 152363274 -10236656 - MER33 DNA MER1_type -128 196 1 374 264 16 64 chrX 152363481 152363606 -10236324 + L2 LINE L2 3189 3307 -6 496 297 171 29 chrX 152363635 152364198 -10235732 + L2 LINE L2 1437 2130 -1184 885 295 135 30 chrX 152364216 152364974 -10234956 + L2 LINE L2 2461 3313 0 245 244 134 42 chrX 152365548 152365667 -10234263 + MIR SINE MIR 131 260 -2 255 273 134 13 chrX 152365751 152365931 -10233999 - MIR SINE MIR -13 249 47 2256 99 0 7 chrX 152365933 152366235 -10233695 + AluSg SINE Alu 1 300 -10 536 175 238 0 chrX 152366268 152366411 -10233519 + MER58A DNA MER1_type 46 222 -2 297 246 6 149 chrX 152368277 152368452 -10231478 + LTR67 LTR ERVL 7 156 -401 271 262 115 57 chrX 152368480 152368602 -10231328 - MER5A DNA MER1_type -25 164 36 446 201 118 95 chrX 152368646 152368770 -10231160 + MER5B DNA MER1_type 5 136 -42 366 91 0 0 chrX 152368770 152368825 -10231105 + (TG)n Simple_repeat Simple_repeat 1 55 0 446 201 118 95 chrX 152368825 152368869 -10231061 + MER5B DNA MER1_type 136 177 -1 420 330 5 16 chrX 152369066 152369260 -10230670 + LTR67 LTR ERVL 365 556 -1 265 286 71 12 chrX 152369319 152369403 -10230527 + MIR SINE MIR 101 189 -73 2348 73 0 41 chrX 152370116 152370430 -10229500 + AluY SINE Alu 1 301 -10 6490 88 33 0 chrX 152370738 152371812 -10228118 - L1PA11 LINE L1 -3 6171 5087 519 323 70 85 chrX 152372065 152372544 -10227386 - L1MEd LINE L1 -4875 1244 778 1557 120 29 72 chrX 152372544 152372820 -10227110 - AluSg SINE Alu -3 307 44 519 323 70 85 chrX 152372820 152373083 -10226847 - L1MEd LINE L1 -5341 778 513 463 239 156 12 chrX 152373210 152373377 -10226553 + MER58C DNA MER1_type 25 215 0 2509 52 0 43 chrX 152373682 152374007 -10225923 + AluY SINE Alu 1 311 0 536 281 124 55 chrX 152374057 152374420 -10225510 - L1MEd LINE L1 -5088 1031 644 290 250 24 12 chrX 152375089 152375173 -10224757 + MLT1I LTR MaLR 121 205 -204 619 294 5 5 chrX 152375501 152375688 -10224242 - MIR SINE MIR -4 258 72 198 248 158 50 chrX 152375747 152375848 -10224082 - L2 LINE L2 -1 3312 3201 226 217 84 0 chrX 152376393 152376476 -10223454 - L1MC4 LINE L1 -1342 6700 6611 453 234 37 9 chrX 152376476 152376583 -10223347 - MIR SINE MIR -79 183 74 400 213 170 48 chrX 152377040 152377125 -10222805 - L2 LINE L2 0 3313 3240 279 0 0 0 chrX 152377125 152377156 -10222774 + (CA)n Simple_repeat Simple_repeat 2 32 0 400 213 170 48 chrX 152377156 152377258 -10222672 - L2 LINE L2 -73 3240 3103 * 4209 280 63 32 chrX 152377248 152378693 -10221237 - L2 LINE L2 -408 2906 1418 366 349 7 0 chrX 152379713 152379862 -10220068 - MLT1J2 LTR MaLR -38 412 263 1232 176 11 27 chrX 152379914 152380176 -10219754 - L1MB1 LINE L1 -51 6138 5881 959 152 44 5 chrX 152380177 152380381 -10219549 + L1MA10 LINE L1 6122 6333 -1 257 227 52 41 chrX 152380418 152380515 -10219415 - MLT1J2 LTR MaLR -294 156 59 760 273 139 82 chrX 152380565 152381077 -10218853 + MLT1H1 LTR MaLR 1 554 -1 214 215 77 0 chrX 152381390 152381455 -10218475 + GA-rich Low_complexity Low_complexity 2 71 0 329 330 149 17 chrX 152381754 152381935 -10217995 - L2 LINE L2 -244 3028 2793 1284 122 89 14 chrX 152381935 152382149 -10217781 - MER30 DNA MER1_type 0 230 1 329 330 149 17 chrX 152382149 152382230 -10217700 - L2 LINE L2 -479 2793 2724 242 333 171 0 chrX 152382361 152382466 -10217464 - L2 LINE L2 -4 3268 3146 206 167 21 0 chrX 152382904 152382952 -10216978 + (CCCA)n Simple_repeat Simple_repeat 1 49 0 4155 91 19 13 chrX 152383251 152383865 -10216065 - L1PA14 LINE L1 -2 6159 5542 252 207 17 17 chrX 152384957 152385015 -10214915 - L2 LINE L2 -8 3264 3207 759 209 0 13 chrX 152385025 152385183 -10214747 - MER45A DNA AcHobo -7 171 16 444 336 56 14 chrX 152385375 152385518 -10214412 - L2 LINE L2 -1 3271 3123 345 316 90 86 chrX 152385518 152385762 -10214168 - L2 LINE L2 -1 3271 3027 182 310 142 18 chrX 152385772 152385885 -10214045 - L2 LINE L2 -514 2800 2674 805 207 49 0 chrX 152387049 152387213 -10212717 - MER5B DNA MER1_type -6 172 1 1084 216 4 18 chrX 152388918 152389145 -10210785 + MER58A DNA MER1_type 1 224 0 485 247 156 0 chrX 152389156 152389310 -10210620 - MER5A DNA MER1_type -3 186 9 276 271 115 0 chrX 152389387 152389509 -10210421 + MIR SINE MIR 122 257 -5 378 207 35 0 chrX 152390192 152390279 -10209651 + L1MA10 LINE L1 6235 6324 -10 2222 56 4 0 chrX 152390347 152390615 -10209315 - AluY SINE Alu -12 299 31 661 188 75 38 chrX 152390789 152390975 -10208955 + LTR50 LTR ERVL 1 193 -602 267 279 13 0 chrX 152391058 152391137 -10208793 + LTR33A LTR ERVL 430 509 -14 197 159 68 45 chrX 152391398 152391442 -10208488 + MIR SINE MIR 6 50 -212 961 200 26 0 chrX 152391444 152391634 -10208296 - MER3 DNA MER1_type -14 195 1 646 285 47 0 chrX 152391644 152391816 -10208114 + MIR SINE MIR 54 233 -29 497 299 52 19 chrX 152392603 152392874 -10207056 + L2 LINE L2 1825 2104 -1210 527 347 22 2 chrX 152392874 152393246 -10206684 + L2 LINE L2 2670 3045 -268 299 167 17 0 chrX 152393247 152393307 -10206623 + MER46C DNA MER2_type 95 155 -183 1901 205 39 19 chrX 152393529 152393939 -10205991 - MER47B DNA MER2_type 0 418 1 2872 118 12 2 chrX 152394108 152394532 -10205398 - MSTC LTR MaLR 0 428 1 234 297 0 69 chrX 152395035 152395136 -10204794 - MIR SINE MIR -14 248 155 275 148 283 3 chrX 152395574 152395661 -10204269 - MIR SINE MIR -68 140 38 28 0 0 0 chrX 152395997 152396025 -10203905 + AT_rich Low_complexity Low_complexity 1 28 0 566 213 33 22 chrX 152397465 152397648 -10202282 - MER114 LTR ERV -454 194 10 608 271 71 11 chrX 152398182 152398448 -10201482 - L1MC4 LINE L1 -72 7970 7689 233 323 97 0 chrX 152398478 152398571 -10201359 - L2 LINE L2 -954 2360 2259 206 236 169 45 chrX 152399399 152399488 -10200442 - L2 LINE L2 -5 3267 3168 * 371 289 80 68 chrX 152399467 152399778 -10200152 + L2 LINE L2 1972 2286 -1028 282 125 0 0 chrX 152399928 152399976 -10199954 + (CTTTG)n Simple_repeat Simple_repeat 2 49 0 774 318 70 72 chrX 152400484 152401461 -10198469 + L2 LINE L2 2285 3270 -2 679 221 95 22 chrX 152402070 152402384 -10197546 + MER33 DNA MER1_type 1 324 0 231 169 17 17 chrX 152402670 152402729 -10197201 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 189 0 0 0 chrX 152402867 152402888 -10197042 + (CA)n Simple_repeat Simple_repeat 1 21 0 1805 172 3 7 chrX 152403127 152403418 -10196512 - AluJb SINE Alu -22 290 1 1449 97 19 32 chrX 152403686 152403902 -10196028 - AluSx SINE Alu -65 247 35 32 26 0 0 chrX 152406112 152406151 -10193779 + AT_rich Low_complexity Low_complexity 1 39 0 361 143 36 0 chrX 152406185 152406241 -10193689 - MIR SINE MIR -114 148 91 424 264 39 31 chrX 152407133 152407262 -10192668 - MIR3 SINE MIR -13 195 66 1549 138 150 4 chrX 152407774 152408034 -10191896 - AluSx SINE Alu -2 300 3 228 176 40 27 chrX 152408231 152408305 -10191625 - L1ME4a LINE L1 -54 6067 5993 808 331 94 14 chrX 152408411 152408782 -10191148 + L2 LINE L2 2882 3282 -31 562 332 86 14 chrX 152409561 152409781 -10190149 + MIR SINE MIR 13 248 -14 188 371 50 36 chrX 152409835 152409975 -10189955 - L2 LINE L2 -13 3300 3159 189 196 0 0 chrX 152410413 152410459 -10189471 + A-rich Low_complexity Low_complexity 1 46 0 1129 245 107 46 chrX 152410996 152411474 -10188456 + MLT1J LTR MaLR 5 511 0 21 0 0 0 chrX 152411984 152412005 -10187925 + AT_rich Low_complexity Low_complexity 1 21 0 2434 169 31 13 chrX 152412092 152412541 -10187389 + MSTB2 LTR MaLR 1 457 0 244 247 143 13 chrX 152412866 152412943 -10186987 - L2 LINE L2 0 3272 3186 4575 218 26 30 chrX 152413925 152414567 -10185363 - L1MD2 LINE L1 -22 6337 5694 2253 109 29 35 chrX 152414567 152414944 -10184986 + THE1C LTR MaLR 1 375 0 4575 218 26 30 chrX 152414944 152416564 -10183366 - L1MD2 LINE L1 -665 5694 4075 948 267 85 12 chrX 152416612 152417177 -10182753 - L1MD2 LINE L1 -2468 3678 3073 2183 134 4 153 chrX 152417282 152417819 -10182111 - LTR32 LTR ERVL 0 471 15 6103 71 4 14 chrX 152419515 152420303 -10179627 + LTR17 LTR ERV1 1 780 0 1995 139 7 3 chrX 152421147 152421441 -10178489 - AluJb SINE Alu -17 295 1 371 333 10 10 chrX 152421500 152421698 -10178232 + LTR24C-int LTR ERV1 4257 4454 -500 473 248 44 7 chrX 152422008 152422145 -10177785 + LTR24C-int LTR ERV1 4982 5123 0 2463 154 147 0 chrX 152422150 152422696 -10177234 + LTR24C LTR ERV1 10 635 0 1525 210 104 77 chrX 152422812 152423663 -10176267 - LTR1B LTR ERV1 -6 1014 1 2285 37 0 54 chrX 152424883 152425177 -10174753 - AluY SINE Alu 0 311 34 226 255 0 0 chrX 152425208 152425259 -10174671 + MER117 DNA MER1_type 96 146 -51 21 0 0 0 chrX 152425611 152425632 -10174298 + AT_rich Low_complexity Low_complexity 1 21 0 449 259 77 84 chrX 152426634 152426931 -10172999 + MLT1I LTR MaLR 115 409 0 218 283 151 19 chrX 152427632 152427738 -10172192 - MIR SINE MIR -12 250 131 1829 174 78 69 chrX 152427764 152428291 -10171639 - MLT1E2 LTR MaLR -6 620 39 2416 201 13 30 chrX 152428884 152429420 -10170510 - MER87 LTR ERV1 -14 527 1 259 306 99 25 chrX 152429641 152429762 -10170168 - L2 LINE L2 0 3272 3143 871 191 6 6 chrX 152429860 152430038 -10169892 + L1MB8 LINE L1 5384 5561 -613 1029 113 0 0 chrX 152430038 152430221 -10169709 + AluY SINE Alu 141 323 0 497 168 0 3 chrX 152430222 152430324 -10169606 + L1MB8 LINE L1 5552 5651 -515 1651 170 28 112 chrX 152430378 152430912 -10169018 + L1MB8 LINE L1 5634 6122 -56 269 266 142 9 chrX 152431167 152431280 -10168650 + MIR SINE MIR 85 212 -50 241 299 37 9 chrX 152431283 152431390 -10168540 + L1ME4a LINE L1 5973 6082 -39 605 258 74 6 chrX 152431566 152431729 -10168201 + MIR SINE MIR 76 249 -13 214 175 0 25 chrX 152431746 152431786 -10168144 + GA-rich Low_complexity Low_complexity 3 41 0 192 40 0 0 chrX 152432206 152432231 -10167699 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 559 233 39 39 chrX 152432287 152432467 -10167463 - MIR3 SINE MIR -4 204 25 204 245 0 0 chrX 152432924 152432977 -10166953 + CT-rich Low_complexity Low_complexity 4 56 0 1492 185 82 4 chrX 152432987 152433268 -10166662 - AluJo SINE Alu -9 303 1 379 240 240 0 chrX 152433832 152433978 -10165952 + MER5A DNA MER1_type 9 189 0 562 205 5 98 chrX 152434448 152434663 -10165267 + L1 LINE L1 4110 4304 -1842 499 283 50 6 chrX 152434946 152435126 -10164804 - MIR SINE MIR -70 192 5 340 207 58 23 chrX 152435343 152435430 -10164500 - MIR3 SINE MIR -10 198 109 257 189 0 137 chrX 152435584 152435679 -10164251 - L3 LINE CR1 -195 1382 1301 857 336 142 22 chrX 152436513 152437415 -10162515 + L2 LINE L2 1729 2738 -576 742 273 0 6 chrX 152437680 152437856 -10162074 - MER58A DNA MER1_type -49 175 1 21 36 0 0 chrX 152438435 152438463 -10161467 + AT_rich Low_complexity Low_complexity 1 28 0 1739 137 87 36 chrX 152439756 152440113 -10159817 - THE1C LTR MaLR 0 375 1 25 0 0 0 chrX 152440535 152440560 -10159370 + AT_rich Low_complexity Low_complexity 1 25 0 2207 180 87 21 chrX 152442454 152442926 -10157004 + MLT1D LTR MaLR 1 503 -2 303 78 0 0 chrX 152443161 152443212 -10156718 + Alu SINE Alu 250 300 0 2477 132 2 5 chrX 152444765 152445173 -10154757 - L1MA4A LINE L1 -3 6300 5894 6050 79 1 2 chrX 152445173 152445986 -10153944 + L1PA8 LINE L1 5361 6172 0 3271 132 25 38 chrX 152445986 152446813 -10153117 - L1MA4A LINE L1 -395 5908 5086 * 3325 173 44 4 chrX 152446804 152447702 -10152228 + L1 LINE L1 4347 5305 -841 371 319 34 17 chrX 152448216 152448335 -10151595 - MIR SINE MIR -66 142 22 337 308 0 39 chrX 152448613 152448717 -10151213 + MIR3 SINE MIR 82 181 -27 2241 68 4 4 chrX 152448919 152449232 -10150698 + AluY SINE Alu 1 313 0 303 337 12 0 chrX 152450034 152450117 -10149813 + MIR3 SINE MIR 82 165 -43 452 301 17 23 chrX 152451190 152451422 -10148508 + GA-rich Low_complexity Low_complexity 1 230 0 1805 168 7 10 chrX 152451423 152451726 -10148204 + AluJb SINE Alu 2 303 -9 865 304 33 18 chrX 152452637 152453107 -10146823 + MER115 DNA AcHobo 63 579 -114 2125 138 15 6 chrX 152453107 152453448 -10146482 - MER2 DNA MER2_type 0 344 1 865 304 33 18 chrX 152453448 152453564 -10146366 + MER115 DNA AcHobo 579 692 -1 240 111 0 0 chrX 152453999 152454035 -10145895 + (GGAGA)n Simple_repeat Simple_repeat 5 40 0 226 288 88 0 chrX 152454594 152454674 -10145256 - MER91C DNA MER1_type -53 87 1 406 304 52 7 chrX 152455033 152455168 -10144762 + MIR SINE MIR 14 154 -108 183 100 0 0 chrX 152455907 152455937 -10143993 + (TC)n Simple_repeat Simple_repeat 1 30 0 386 342 13 44 chrX 152456128 152456356 -10143574 - L3 LINE CR1 -3 1574 1354 2128 138 47 14 chrX 152456587 152456950 -10142980 + THE1C LTR MaLR 1 375 0 389 264 0 11 chrX 152457084 152457175 -10142755 - L2 LINE L2 0 3313 3224 776 329 172 16 chrX 152457204 152458000 -10141930 + L2 LINE L2 1710 2629 -685 2140 231 48 6 chrX 152458007 152458548 -10141382 - MER90 LTR ERV1 -1 574 11 183 366 0 40 chrX 152458563 152458664 -10141266 + L2 LINE L2 2628 2724 -590 301 274 74 30 chrX 152459780 152459915 -10140015 - L2 LINE L2 -8 3305 3165 359 325 186 13 chrX 152460179 152460416 -10139514 - L2 LINE L2 -1171 2143 1866 242 330 33 11 chrX 152460763 152460854 -10139076 + MIR SINE MIR 23 115 -147 2296 193 42 46 chrX 152460856 152460916 -10139014 - MLT2B3 LTR ERVL 0 554 495 189 0 0 0 chrX 152460916 152460937 -10138993 + (GA)n Simple_repeat Simple_repeat 2 22 0 2296 193 42 46 chrX 152460937 152461420 -10138510 - MLT2B3 LTR ERVL -59 495 13 198 302 0 0 chrX 152461468 152461531 -10138399 + MIR SINE MIR 200 262 0 213 271 71 0 chrX 152461572 152461642 -10138288 + MIR SINE MIR 120 194 -68 264 59 0 0 chrX 152462729 152462763 -10137167 + (TG)n Simple_repeat Simple_repeat 1 34 0 695 146 7 22 chrX 152462792 152462929 -10137001 + Tigger1 DNA MER2_type 23 157 -2261 * 1277 136 19 0 chrX 152462918 152463131 -10136799 + Tigger1 DNA MER2_type 2202 2418 0 242 261 0 15 chrX 152463131 152463196 -10136734 + (TA)n Simple_repeat Simple_repeat 1 64 0 182 311 0 0 chrX 152463490 152463535 -10136395 + MIR SINE MIR 218 262 0 341 321 101 6 chrX 152464222 152464381 -10135549 - MIR SINE MIR -6 256 83 29927 107 7 59 chrX 152465811 152472297 -10127633 + L1PA7 LINE L1 12 6152 -2 198 103 0 0 chrX 152472582 152472611 -10127319 + (CA)n Simple_repeat Simple_repeat 2 30 0 432 154 0 33 chrX 152472627 152472718 -10127212 + HAL1 LINE L1 124 211 -2296 323 67 0 0 chrX 152472717 152472762 -10127168 + L1PA11 LINE L1 5804 5848 -326 * 2810 161 52 2 chrX 152472762 152473277 -10126653 - MER41D LTR ERV1 -16 541 1 343 271 95 53 chrX 152473431 152473837 -10126093 + MLT1L LTR MaLR 149 492 -19 615 157 10 0 chrX 152474016 152474118 -10125812 + U6 snRNA snRNA 5 107 0 1522 182 9 3 chrX 152474118 152474437 -10125493 + L1P LINE L1 1890 2210 -3936 5462 82 40 63 chrX 152474438 152475283 -10124647 - LTR12 LTR ERV1 0 826 1 753 242 35 47 chrX 152475512 152475768 -10124162 - pTR5 LTR ERV1 -1443 995 743 12370 144 11 1 chrX 152475768 152477920 -10122010 + L1P LINE L1 2208 4381 -1765 229 310 31 8 chrX 152477929 152478058 -10121872 + (CATA)n Simple_repeat Simple_repeat 4 135 0 5148 77 34 13 chrX 152478251 152479020 -10120910 + L1PA10 LINE L1 5378 6162 -6 1624 294 59 35 chrX 152479015 152479763 -10120167 + HAL1 LINE L1 202 967 -1540 * 335 296 56 19 chrX 152480204 152480636 -10119294 - L1MCa LINE L1 -2841 3585 3138 949 185 120 7 chrX 152480673 152481057 -10118873 + MLT1D LTR MaLR 21 505 0 229 125 36 0 chrX 152481244 152481300 -10118630 + (TA)n Simple_repeat Simple_repeat 2 59 0 21 36 0 0 chrX 152481384 152481412 -10118518 + AT_rich Low_complexity Low_complexity 1 28 0 332 308 85 46 chrX 152481635 152481940 -10117990 - L1MCa LINE L1 -3959 2467 2151 541 286 125 34 chrX 152482107 152482667 -10117263 - HAL1 LINE L1 -742 1765 1155 477 313 108 47 chrX 152482760 152483057 -10116873 - HAL1 LINE L1 -1382 1125 811 828 316 75 29 chrX 152483770 152483845 -10116085 - L2 LINE L2 -2 3311 3241 180 0 0 0 chrX 152483845 152483865 -10116065 + (CAA)n Simple_repeat Simple_repeat 2 21 0 828 316 75 29 chrX 152483865 152484204 -10115726 - L2 LINE L2 -72 3241 2878 461 195 55 73 chrX 152484413 152484577 -10115353 - MER63A DNA MER1_type 0 210 50 465 306 153 14 chrX 152484948 152485170 -10114760 - MIR SINE MIR -4 258 6 733 129 88 67 chrX 152485664 152485857 -10114073 + Charlie5 DNA MER1_type 1 197 -2415 * 928 184 82 0 chrX 152485854 152486110 -10113820 + Charlie5 DNA MER1_type 2348 2624 0 2188 120 0 19 chrX 152486722 152487031 -10112899 + AluSx SINE Alu 1 303 -9 360 276 11 0 chrX 152487113 152487200 -10112730 - L2 LINE L2 -5 3308 3221 2329 109 3 0 chrX 152488103 152488415 -10111515 + AluSp SINE Alu 1 313 0 26 50 0 0 chrX 152488451 152488491 -10111439 + AT_rich Low_complexity Low_complexity 1 40 0 439 271 191 34 chrX 152488849 152489047 -10110883 - L1MC4a LINE L1 -1905 5903 5737 958 21 5 68 chrX 152489047 152489238 -10110692 + (TA)n Simple_repeat Simple_repeat 2 180 0 439 271 191 34 chrX 152489238 152489390 -10110540 - L1MC4a LINE L1 -2071 5737 5498 196 205 0 0 chrX 152489390 152489429 -10110501 + L2 LINE L2 1821 1859 -1455 2316 98 0 0 chrX 152489458 152489753 -10110177 + AluSx SINE Alu 1 295 -17 361 261 172 38 chrX 152490053 152490210 -10109720 + L1MC4a LINE L1 5987 6164 -1644 1603 171 3 35 chrX 152490250 152490536 -10109394 - AluJo SINE Alu -23 289 13 358 266 104 42 chrX 152490668 152490860 -10109070 - L2 LINE L2 -1201 2113 1910 5261 73 0 0 chrX 152490888 152491630 -10108300 - L1P LINE L1 -1154 4992 4251 6161 54 0 0 chrX 152491630 152492389 -10107541 + L1PA8 LINE L1 5393 6154 -18 417 20 0 0 chrX 152492389 152492439 -10107491 + (CATA)n Simple_repeat Simple_repeat 2 51 0 842 149 0 0 chrX 152492780 152492901 -10107029 - FLAM_A SINE Alu -8 125 5 195 42 0 0 chrX 152492905 152492929 -10107001 + (TTA)n Simple_repeat Simple_repeat 1 24 0 385 289 58 0 chrX 152492936 152493040 -10106890 - MIR SINE MIR -7 255 146 * 442 348 13 0 chrX 152493039 152493194 -10106736 + MIR3 SINE MIR 50 206 -2 228 233 0 0 chrX 152493491 152493534 -10106396 + (TG)n Simple_repeat Simple_repeat 1 43 0 202 189 0 0 chrX 152495283 152495320 -10104610 + (CAG)n Simple_repeat Simple_repeat 3 39 0 784 158 61 0 chrX 152497254 152497418 -10102512 + L1MB8 LINE L1 5283 5456 -722 250 105 0 0 chrX 152497511 152497549 -10102381 + L1MB8 LINE L1 5462 5499 -679 785 168 0 0 chrX 152497551 152497670 -10102260 + FLAM_C SINE Alu 2 120 -23 3503 158 28 19 chrX 152497670 152498358 -10101572 + L1MB8 LINE L1 5476 6169 -9 31 44 0 0 chrX 152498576 152498621 -10101309 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 152498652 152498673 -10101257 + AT_rich Low_complexity Low_complexity 1 21 0 587 190 27 4 chrX 152498677 152498923 -10101007 - L1MA9 LINE L1 -40 6272 5937 5798 143 18 5 chrX 152498931 152500500 -10099430 - L1MA1 LINE L1 -101 7620 6029 6611 197 41 16 chrX 152500504 152501919 -10098011 - L1MA1 LINE L1 -6109 1456 6 1259 140 124 18 chrX 152502998 152503305 -10096625 + MSTA LTR MaLR 1 320 -55 786 186 0 8 chrX 152504040 152504169 -10095761 + FLAM_A SINE Alu 1 128 -5 1947 141 133 16 chrX 152504246 152504629 -10095301 - MSTA LTR MaLR 0 428 1 1881 171 9 26 chrX 152504728 152505068 -10094862 + MER1B DNA MER1_type 6 339 0 282 167 118 104 chrX 152507433 152507577 -10092353 + MLT1L LTR MaLR 244 389 -226 415 281 58 0 chrX 152507590 152507711 -10092219 + MLT2B1 LTR ERVL 298 425 -95 263 216 45 41 chrX 152507720 152507829 -10092101 + MLT1L LTR MaLR 386 602 -13 2753 167 8 21 chrX 152507918 152508403 -10091527 + MLT2B1 LTR ERVL 1 479 -41 393 223 0 0 chrX 152508460 152508554 -10091376 + (TA)n Simple_repeat Simple_repeat 1 94 0 276 125 21 0 chrX 152508560 152508608 -10091322 + MLT2C2 LTR ERVL 416 464 0 2061 103 6 41 chrX 152508647 152508987 -10090943 + L1MB3 LINE L1 5855 6182 -1 26 50 0 0 chrX 152509009 152509049 -10090881 + AT_rich Low_complexity Low_complexity 1 40 0 647 282 80 10 chrX 152509103 152509421 -10090509 + L1MC4a LINE L1 5500 5775 -346 669 226 11 75 chrX 152509421 152509607 -10090323 + MER5B DNA MER1_type 4 177 -1 1518 275 168 27 chrX 152509729 152510326 -10089604 + HAL1 LINE L1 3 725 -1782 2090 157 40 5 chrX 152510326 152510703 -10089227 + MLT1B LTR MaLR 1 390 0 1518 275 168 27 chrX 152510703 152510842 -10089088 + HAL1 LINE L1 725 843 -1664 * 2680 31 0 42 chrX 152510839 152511199 -10088731 - L1PA4 LINE L1 -187 5968 5624 1396 36 0 0 chrX 152511199 152511363 -10088567 + L1PA4 LINE L1 5986 6152 -3 356 264 32 0 chrX 152511370 152511495 -10088435 + HAL1 LINE L1 826 954 -1553 877 99 7 7 chrX 152511496 152511638 -10088292 + L1MB7 LINE L1 5835 5976 -208 672 263 112 76 chrX 152511726 152512171 -10087759 + MLT1K LTR MaLR 128 588 0 1843 127 173 24 chrX 152512218 152512402 -10087528 + MSTA LTR MaLR 1 156 -272 252 0 0 0 chrX 152512402 152512430 -10087500 + (TC)n Simple_repeat Simple_repeat 1 28 0 1843 127 173 24 chrX 152512430 152512614 -10087316 + MSTA LTR MaLR 156 424 -4 18581 165 21 24 chrX 152512966 152515657 -10084273 + L1MA1 LINE L1 22 2719 -5002 2399 63 0 0 chrX 152515657 152515942 -10083988 + AluY SINE Alu 27 311 0 18581 165 21 24 chrX 152515942 152520798 -10079132 + L1MA1 LINE L1 2719 7721 0 1251 92 0 0 chrX 152520828 152521001 -10078929 + L1PA8 LINE L1 5998 6170 -2 200 255 39 0 chrX 152521268 152521319 -10078611 + GA-rich Low_complexity Low_complexity 4 56 0 29 28 0 0 chrX 152521757 152521793 -10078137 + AT_rich Low_complexity Low_complexity 1 36 0 2706 81 22 5 chrX 152521862 152522231 -10077699 + THE1C LTR MaLR 1 375 0 367 273 154 69 chrX 152522274 152522534 -10077396 - HAL1 LINE L1 0 2507 2226 1797 154 48 26 chrX 152523814 152524199 -10075731 + LTR49-int LTR ERV1 842 1612 -3268 364 235 0 0 chrX 152524202 152524270 -10075660 + tRNA-Glu-GAG tRNA tRNA 8 75 0 472 114 23 11 chrX 152524324 152524412 -10075518 + MER39-int LTR ERV1 1294 1382 -4949 2199 202 29 2 chrX 152524418 152524833 -10075097 + MSTB LTR MaLR 1 426 0 6051 204 15 49 chrX 152524983 152526495 -10073435 + MER39-int LTR ERV1 1385 2844 -3487 1341 187 4 30 chrX 152526502 152526764 -10073166 - AluJo SINE Alu -8 304 50 671 84 0 19 chrX 152526786 152526893 -10073037 + LTR49-int LTR ERV1 2829 2933 -3398 2115 144 59 4 chrX 152526895 152527290 -10072640 + MSTA LTR MaLR 3 382 -8 2888 157 26 72 chrX 152527290 152528017 -10071913 + MER39-int LTR ERV1 2929 3622 -2709 856 133 0 0 chrX 152528028 152528148 -10071782 + FLAM_C SINE Alu 1 120 -23 346 189 91 38 chrX 152528161 152528293 -10071637 + MER39-int LTR ERV1 2978 3116 -3642 3045 131 51 47 chrX 152528302 152528983 -10070947 + MER39-int LTR ERV1 3712 4395 -1936 1288 170 56 50 chrX 152529034 152529392 -10070538 + MER39-int LTR ERV1 4567 4926 -1405 4010 142 64 19 chrX 152529393 152530294 -10069636 + MER39-int LTR ERV1 3712 4694 -242 1944 19 0 0 chrX 152530310 152530524 -10069406 + AluY SINE Alu 98 311 0 803 87 17 9 chrX 152530530 152530645 -10069285 + AluY SINE Alu 29 144 -167 2564 46 0 0 chrX 152530645 152530950 -10068980 + AluY SINE Alu 1 305 -6 367 206 14 0 chrX 152530988 152531061 -10068869 + MER39-int LTR ERV1 6080 6153 -178 384 191 83 0 chrX 152531174 152531258 -10068672 + MER39 LTR ERV1 1 91 -616 244 195 0 0 chrX 152531360 152531401 -10068529 - Alu SINE Alu -121 181 141 1930 164 3 0 chrX 152532149 152532460 -10067470 - AluJb SINE Alu 0 312 1 40 49 0 0 chrX 152532649 152532710 -10067220 + AT_rich Low_complexity Low_complexity 1 61 0 3944 130 6 13 chrX 152532758 152533437 -10066493 - L1MA2 LINE L1 0 6304 5631 225 0 0 0 chrX 152533468 152533493 -10066437 + (A)n Simple_repeat Simple_repeat 1 25 0 14460 144 28 16 chrX 152533500 152534470 -10065460 - L1 LINE L1 -3404 4161 3205 2397 55 0 36 chrX 152534470 152534777 -10065153 - AluY SINE Alu -14 297 2 14460 144 28 16 chrX 152534777 152536825 -10063105 - L1 LINE L1 -4360 3205 1105 401 211 41 24 chrX 152536819 152536942 -10062988 - L1 LINE L1 -7428 137 13 * 639 243 79 21 chrX 152537187 152537558 -10062372 + L1ME LINE L1 5191 5588 -574 393 228 82 35 chrX 152537661 152537832 -10062098 - L1MEd LINE L1 -5883 236 58 303 326 46 50 chrX 152537851 152538268 -10061662 - L1 LINE L1 -2652 3494 3080 536 254 41 89 chrX 152538659 152538950 -10060980 - MLT1J LTR MaLR 0 511 235 362 199 44 147 chrX 152539605 152539695 -10060235 + L1ME1 LINE L1 4912 5010 -1136 1793 152 3 74 chrX 152539695 152540031 -10059899 + AluJb SINE Alu 1 312 0 362 199 44 147 chrX 152540031 152540212 -10059718 + L1ME1 LINE L1 5010 5155 -991 1783 249 78 21 chrX 152540226 152540985 -10058945 + L1ME1 LINE L1 5297 6163 -3 570 174 10 0 chrX 152541971 152542069 -10057861 + FLAM_A SINE Alu 23 121 -21 25 0 0 0 chrX 152542072 152542097 -10057833 + AT_rich Low_complexity Low_complexity 1 25 0 1741 188 0 7 chrX 152542526 152542834 -10057096 - AluJb SINE Alu -6 306 1 451 177 21 55 chrX 152542868 152542995 -10056935 - L1MC3 LINE L1 -6 7771 6205 4890 122 60 20 chrX 152542995 152543789 -10056141 - LTR12 LTR ERV1 0 826 1 668 225 7 48 chrX 152543975 152544246 -10055684 - pTR5 LTR ERV1 -1410 1028 769 842 222 5 5 chrX 152544249 152544461 -10055469 - L1MD3 LINE L1 -103 7892 7681 1212 176 5 18 chrX 152544488 152544710 -10055220 - AluJb SINE Alu -7 305 87 375 231 0 0 chrX 152545109 152545187 -10054743 + MLT1J LTR MaLR 103 180 -331 186 43 0 0 chrX 152545444 152545467 -10054463 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 692 219 27 0 chrX 152546026 152546172 -10053758 - MIR SINE MIR -23 239 90 3460 104 63 5 chrX 152546241 152546800 -10053130 - LTR59 LTR ERV1 -6 591 1 1500 167 16 71 chrX 152546905 152547216 -10052714 - AluJo SINE Alu -2 310 17 1443 119 5 5 chrX 152547566 152547768 -10052162 + AluJb SINE Alu 1 202 -110 5146 203 51 27 chrX 152548291 152549580 -10050350 + L1MC2 LINE L1 1 1258 -5306 2157 178 13 0 chrX 152549580 152549978 -10049952 + MER57A LTR ERV1 1 403 0 5146 203 51 27 chrX 152549978 152551563 -10048367 + L1MC2 LINE L1 1258 2804 -3760 312 27 0 0 chrX 152551563 152551600 -10048330 + (TG)n Simple_repeat Simple_repeat 2 38 0 1814 133 4 18 chrX 152551601 152551880 -10048050 - AluSx SINE Alu -37 275 1 5146 203 51 27 chrX 152551880 152552245 -10047685 + L1MC2 LINE L1 2803 3427 -3137 * 5176 193 49 9 chrX 152552239 152552683 -10047247 + L1MC2 LINE L1 4750 5175 -1587 1095 185 85 79 chrX 152552683 152552935 -10046995 + MER2 DNA MER2_type 3 259 -85 1937 144 0 3 chrX 152552935 152553226 -10046704 - AluSg SINE Alu -20 290 1 1095 185 85 79 chrX 152553226 152553313 -10046617 + MER2 DNA MER2_type 259 344 0 5176 193 49 9 chrX 152553313 152554809 -10045121 + L1MC2 LINE L1 5175 6753 -9 203 298 69 38 chrX 152554853 152554984 -10044946 - L2 LINE L2 -213 3059 2925 641 226 8 15 chrX 152555160 152555293 -10044637 - L2 LINE L2 0 3313 3182 768 208 11 12 chrX 152555312 152555536 -10044394 + L1M4 LINE L1 4855 5072 -1074 1085 258 111 41 chrX 152555552 152556037 -10043893 - L2 LINE L2 -436 2878 2360 213 216 0 0 chrX 152556353 152556390 -10043540 - L2 LINE L2 -16 3256 3220 343 235 21 123 chrX 152557488 152557675 -10042255 + L2 LINE L2 3120 3287 -26 348 83 0 0 chrX 152558250 152558298 -10041632 + (CAAAC)n Simple_repeat Simple_repeat 3 50 0 357 266 103 117 chrX 152558466 152558980 -10040950 - L1M2 LINE L1 -5940 909 403 287 247 242 53 chrX 152562438 152562628 -10037302 - MIR SINE MIR 0 262 37 518 137 0 54 chrX 152563296 152563464 -10036466 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 1661 161 55 0 chrX 152563466 152563757 -10036173 - AluSg SINE Alu -3 307 1 424 241 109 29 chrX 152564476 152564650 -10035280 - MIR SINE MIR -73 189 2 295 279 142 46 chrX 152565307 152565504 -10034426 - MARNA DNA Mariner -200 386 171 602 251 72 6 chrX 152565508 152565675 -10034255 + MER3 DNA MER1_type 32 209 0 196 358 15 0 chrX 152566695 152566762 -10033168 - L2 LINE L2 -9 3304 3237 934 193 5 24 chrX 152566828 152567041 -10032889 - L1M4 LINE L1 -1076 5070 4862 282 301 81 0 chrX 152567506 152567629 -10032301 - L2 LINE L2 -231 3041 2909 202 234 0 0 chrX 152568179 152568226 -10031704 + (TA)n Simple_repeat Simple_repeat 2 48 0 794 180 57 28 chrX 152569527 152569738 -10030192 + L1MB8 LINE L1 5943 6159 -19 297 0 0 0 chrX 152571201 152571234 -10028696 + (TG)n Simple_repeat Simple_repeat 2 34 0 27 39 0 19 chrX 152571235 152571249 -10028681 + AT_rich Low_complexity Low_complexity 1 14 -37 1630 173 13 40 chrX 152571249 152571549 -10028381 - AluJo SINE Alu -16 296 5 27 39 0 19 chrX 152571549 152571586 -10028344 + AT_rich Low_complexity Low_complexity 14 51 0 2203 92 14 0 chrX 152573216 152573521 -10026409 - AluSq SINE Alu 0 309 1 279 247 264 22 chrX 152573541 152573723 -10026207 - L2 LINE L2 -49 3264 3039 213 337 82 31 chrX 152573873 152573971 -10025959 + L2 LINE L2 3127 3229 -43 788 66 0 0 chrX 152576214 152576320 -10023610 + L1MA1 LINE L1 6197 6302 0 21 0 0 0 chrX 152576657 152576678 -10023252 + AT_rich Low_complexity Low_complexity 1 21 0 1789 23 28 0 chrX 152579637 152579853 -10020077 - L1PA3 LINE L1 -1 6154 5933 21 36 0 0 chrX 152580006 152580034 -10019896 + AT_rich Low_complexity Low_complexity 1 28 0 415 333 47 6 chrX 152581018 152581189 -10018741 + MIR SINE MIR 12 189 -73 22 0 0 0 chrX 152583635 152583657 -10016273 + AT_rich Low_complexity Low_complexity 1 22 0 281 325 120 38 chrX 152585019 152585436 -10014494 + L2 LINE L2 2747 3219 -94 1822 163 0 19 chrX 152586349 152586656 -10013274 + AluJb SINE Alu 1 301 -11 2300 37 0 0 chrX 152586656 152586925 -10013005 + AluYa5 SINE Alu 43 311 0 182 267 67 0 chrX 152587188 152587233 -10012697 - L2 LINE L2 -11 3261 3214 246 184 0 41 chrX 152588017 152588066 -10011864 + MIR SINE MIR 76 122 -86 213 159 0 0 chrX 152591735 152591779 -10008151 + GA-rich Low_complexity Low_complexity 1 44 0 2273 97 3 3 chrX 152592611 152592911 -10007019 - AluSq SINE Alu -13 300 1 513 279 85 20 chrX 152593250 152593451 -10006479 - MIR SINE MIR -36 226 13 2309 87 3 3 chrX 152593865 152594163 -10005767 + AluSq SINE Alu 1 298 -15 2430 61 7 0 chrX 152594164 152594460 -10005470 + AluY SINE Alu 1 298 -13 21 0 0 0 chrX 152598906 152598927 -10001003 + AT_rich Low_complexity Low_complexity 1 21 0 2027 132 13 10 chrX 152599501 152599812 -10000118 - AluSx SINE Alu 0 312 1 1372 186 41 11 chrX 152601630 152601950 -9997980 + MER33 DNA MER1_type 1 319 -5 304 346 25 25 chrX 152602360 152602519 -9997411 + ERVL LTR ERVL 1703 1861 -3162 1970 199 269 14 chrX 152602772 152603404 -9996526 - LTR50 LTR ERVL 0 795 3 251 376 17 17 chrX 152604244 152604422 -9995508 + ERVL LTR ERVL 4550 4727 -1037 2066 219 19 40 chrX 152604433 152604907 -9995023 - LTR16B LTR ERVL 0 464 1 836 167 8 0 chrX 152604929 152605061 -9994869 - FLAM_C SINE Alu 0 133 1 298 304 124 41 chrX 152606605 152606887 -9993043 - L2 LINE L2 0 3313 2358 2286 201 17 11 chrX 152606937 152607400 -9992530 + L1MC4 LINE L1 7393 7858 -184 778 279 28 35 chrX 152607432 152607686 -9992244 + MIR SINE MIR 7 258 -4 222 366 55 67 chrX 152607692 152607946 -9991984 - L2 LINE L2 -34 3238 2988 536 249 184 20 chrX 152608109 152608310 -9991620 + MIR SINE MIR 14 247 -15 684 249 85 99 chrX 152608353 152608706 -9991224 + MLT1I LTR MaLR 20 367 -42 252 329 162 17 chrX 152609109 152609473 -9990457 - L2 LINE L2 -232 3040 2632 272 167 0 50 chrX 152609507 152609547 -9990383 - MLT2C1 LTR ERVL 0 520 482 189 0 0 0 chrX 152609547 152609568 -9990362 + (TG)n Simple_repeat Simple_repeat 2 22 0 272 167 0 50 chrX 152609568 152609587 -9990343 - MLT2C1 LTR ERVL -38 482 464 294 94 28 57 chrX 152609587 152609693 -9990237 + (TA)n Simple_repeat Simple_repeat 2 104 0 1011 221 58 8 chrX 152609693 152609923 -9990007 - MLT2C1 LTR ERVL -43 477 119 1471 212 3 9 chrX 152609924 152610269 -9989661 + L1P LINE L1 4951 5293 -853 304 75 113 0 chrX 152610244 152610297 -9989633 + L1PA13 LINE L1 6099 6157 -6 * 2797 6 0 28 chrX 152610308 152610627 -9989303 + AluYb8 SINE Alu 1 310 -8 649 150 50 0 chrX 152610628 152610748 -9989182 - MLT2C1 LTR ERVL -271 126 1 821 302 98 30 chrX 152610753 152611220 -9988710 - L2 LINE L2 -781 2533 2035 398 275 23 130 chrX 152611749 152612011 -9987919 + L2 LINE L2 2962 3195 -77 182 340 21 21 chrX 152612055 152612149 -9987781 - L2 LINE L2 -1039 2275 2182 299 332 47 36 chrX 152612272 152612465 -9987465 - L2 LINE L2 -6 3307 3113 271 294 25 76 chrX 152613096 152613293 -9986637 + LTR67 LTR ERVL 92 278 -279 5270 108 19 6 chrX 152613362 152614193 -9985737 + L1PA16 LINE L1 5325 6166 0 25 51 0 0 chrX 152614193 152614232 -9985698 + AT_rich Low_complexity Low_complexity 1 39 0 1723 152 28 19 chrX 152614237 152614600 -9985330 + L1MA4 LINE L1 4477 4842 -1304 * 34963 67 4 8 chrX 152614583 152620316 -9979614 + L1PA6 LINE L1 438 6150 -4 3761 171 18 36 chrX 152620303 152620836 -9979094 + L1MA4 LINE L1 4801 5342 -829 * 2391 73 7 0 chrX 152620836 152621136 -9978794 + AluSp SINE Alu 1 302 -11 3761 171 18 36 chrX 152621136 152621931 -9977999 + L1MA4 LINE L1 5342 6161 -10 29 0 0 0 chrX 152621992 152622021 -9977909 + AT_rich Low_complexity Low_complexity 1 29 0 2274 228 55 19 chrX 152622105 152622723 -9977207 - MER97a DNA MER1_type? -254 640 1 558 268 143 5 chrX 152623120 152623344 -9976586 - MLT1L LTR MaLR 0 615 361 2133 304 62 49 chrX 152623399 152624721 -9975209 + ERVL LTR ERVL 3724 5062 -702 583 268 103 36 chrX 152624804 152624933 -9974997 - L1ME LINE L1 -462 5702 5583 2116 104 7 10 chrX 152624933 152625230 -9974700 + AluSx SINE Alu 1 296 -16 583 268 103 36 chrX 152625230 152625402 -9974528 - L1ME LINE L1 -581 5583 5381 183 263 18 53 chrX 152625864 152625978 -9973952 - MIR3 SINE MIR -8 200 91 256 211 0 0 chrX 152626088 152626140 -9973790 + LTR40b LTR ERVL 1 52 -410 617 188 8 0 chrX 152626147 152626264 -9973666 + LTR40a LTR ERVL 402 519 0 371 366 30 0 chrX 152626747 152626881 -9973049 - MIR3 SINE MIR -18 190 53 2313 97 7 0 chrX 152627117 152627427 -9972503 + AluSx SINE Alu 1 312 0 707 185 0 43 chrX 152627442 152627604 -9972326 + MER3 DNA MER1_type 41 195 -14 212 265 59 15 chrX 152627764 152627832 -9972098 - L2 LINE L2 -1 3271 3201 240 35 0 0 chrX 152628449 152628478 -9971452 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 2171 102 7 3 chrX 152628748 152629041 -9970889 + AluSx SINE Alu 6 299 -13 2387 82 3 3 chrX 152629042 152629347 -9970583 + AluSx SINE Alu 1 305 -7 2349 77 0 3 chrX 152629347 152629647 -9970283 + AluY SINE Alu 1 299 -12 735 171 30 0 chrX 152629647 152629811 -9970119 - L1MB5 LINE L1 -9 6165 5997 6314 215 54 4 chrX 152629822 152632038 -9967892 - L1MB5 LINE L1 -354 5830 3503 9766 96 0 2 chrX 152632041 152634228 -9965702 - L1PA8 LINE L1 0 6487 4299 10843 123 31 24 chrX 152634228 152637183 -9962747 - L1PA8 LINE L1 -3452 3009 5 1174 128 25 0 chrX 152637202 152637406 -9962524 - L1MA4 LINE L1 -4 6296 6088 6438 83 45 24 chrX 152638387 152640131 -9959799 - SVA Other Other -518 1386 57 189 0 0 0 chrX 152640131 152640152 -9959778 + (GGGAGA)n Simple_repeat Simple_repeat 1 21 0 1563 178 76 57 chrX 152641617 152642000 -9957930 + MLT1B LTR MaLR 1 390 0 544 309 20 13 chrX 152642585 152642737 -9957193 + MIR3 SINE MIR 9 161 -47 331 221 57 32 chrX 152642789 152642947 -9956983 + MER113 DNA MER1_type? 83 244 -277 689 229 86 6 chrX 152643000 152643175 -9956755 - MIR SINE MIR -40 222 34 572 274 30 0 chrX 152643349 152643484 -9956446 - MER45A DNA AcHobo -31 147 9 7094 48 6 0 chrX 152643891 152645336 -9954594 + L1PA7 LINE L1 4689 6138 -16 250 234 94 0 chrX 152645483 152645547 -9954383 + MER113 DNA MER1_type? 452 521 0 22 0 0 0 chrX 152645550 152645572 -9954358 + AT_rich Low_complexity Low_complexity 1 22 0 730 267 158 22 chrX 152646205 152646516 -9953414 + L2 LINE L2 2940 3292 -21 318 331 76 11 chrX 152646544 152646728 -9953202 + L1ME4a LINE L1 2383 2578 -3568 399 314 151 41 chrX 152646829 152647428 -9952502 + L1ME4a LINE L1 3283 3979 -2167 364 347 61 10 chrX 152647437 152647958 -9951972 + L1ME4a LINE L1 3964 4511 -1635 220 200 44 0 chrX 152648032 152648077 -9951853 + L2 LINE L2 3224 3270 -2 422 314 152 51 chrX 152648087 152648260 -9951670 + L1ME4a LINE L1 4585 4739 -1407 1713 127 56 0 chrX 152648260 152648512 -9951418 + AluSg SINE Alu 42 307 -3 422 314 152 51 chrX 152648512 152648924 -9951006 + L1ME4a LINE L1 4739 5229 -917 520 301 76 33 chrX 152648969 152649428 -9950502 + L1ME4a LINE L1 5378 5856 -265 467 237 196 12 chrX 152650126 152650299 -9949631 + MIR SINE MIR 8 212 -50 2367 91 0 0 chrX 152651627 152651923 -9948007 - AluSc SINE Alu -13 296 1 303 353 96 58 chrX 152651986 152652142 -9947788 - L3 LINE CR1 -31 1546 1385 184 327 180 0 chrX 152652338 152652488 -9947442 + MIR SINE MIR 86 262 0 23 33 0 0 chrX 152653596 152653626 -9946304 + AT_rich Low_complexity Low_complexity 1 30 0 1717 167 0 14 chrX 152654034 152654321 -9945609 - AluJo SINE Alu -24 288 6 682 164 35 9 chrX 152654834 152654950 -9944980 - 5S rRNA rRNA -1 120 2 2228 100 3 13 chrX 152655633 152655934 -9943996 + AluSq SINE Alu 1 298 -15 704 206 0 0 chrX 152656313 152656439 -9943491 + MER96 DNA MER1_type? 5 130 -45 2245 75 0 0 chrX 152657751 152658029 -9941901 + AluSg SINE Alu 33 310 0 202 326 157 0 chrX 152658150 152658239 -9941691 - L2 LINE L2 -17 3296 3194 275 291 177 0 chrX 152660002 152660177 -9939753 + L2 LINE L2 1882 2087 -1227 346 389 50 0 chrX 152660485 152660665 -9939265 + L2 LINE L2 2312 2500 -814 236 269 42 67 chrX 152661189 152661308 -9938622 - L2 LINE L2 -35 3278 3163 1976 157 0 0 chrX 152661387 152661680 -9938250 - AluJb SINE Alu -19 293 1 4810 216 23 4 chrX 152661684 152662954 -9936976 - L1 LINE L1 -2619 4946 3653 7152 128 11 10 chrX 152662956 152664265 -9935665 - L1 LINE L1 -3770 3795 2486 21 36 0 0 chrX 152664265 152664293 -9935637 + AT_rich Low_complexity Low_complexity 1 28 0 6912 15 20 1 chrX 152664293 152665099 -9934831 - L1PA3 LINE L1 -3 6152 5332 5510 37 0 0 chrX 152665096 152665769 -9934161 + L1PA3 LINE L1 4678 5350 -796 * 14709 156 22 19 chrX 152665764 152668243 -9931687 - L1 LINE L1 -5061 2504 17 358 367 15 47 chrX 152668341 152668682 -9931248 + L2 LINE L2 718 1047 -2267 548 311 53 104 chrX 152668825 152669259 -9930671 + L2 LINE L2 2861 3272 0 201 304 36 0 chrX 152669439 152669495 -9930435 - MIR SINE MIR -118 90 33 1140 208 99 3 chrX 152669654 152669938 -9929992 + MER46C DNA MER2_type 2 312 -26 828 258 39 21 chrX 152670585 152670818 -9929112 + MIR SINE MIR 1 237 -25 789 273 30 19 chrX 152670856 152671096 -9928834 + MIR SINE MIR 4 244 -18 181 336 66 57 chrX 152671239 152671361 -9928569 - L2 LINE L2 -190 3082 2960 209 300 189 0 chrX 152672381 152672471 -9927459 + MIR SINE MIR 27 133 -75 467 287 16 0 chrX 152672601 152672723 -9927207 + MIR3 SINE MIR 39 162 -46 219 286 56 6 chrX 152672779 152672940 -9926990 + (TA)n Simple_repeat Simple_repeat 1 169 0 24 0 0 0 chrX 152673675 152673699 -9926231 + AT_rich Low_complexity Low_complexity 1 24 0 255 201 164 30 chrX 152673703 152673837 -9926093 - L1ME4a LINE L1 -3 6118 5967 561 301 26 7 chrX 152673952 152674105 -9925825 - L2 LINE L2 0 3272 3117 889 255 73 43 chrX 152674675 152675004 -9924926 - L2 LINE L2 -2 3311 2973 1873 224 45 43 chrX 152675043 152675512 -9924418 - MLT2B1 LTR ERVL -50 470 1 1486 104 50 9 chrX 152675858 152676079 -9923851 - MER30 DNA MER1_type 0 230 1 772 229 127 0 chrX 152677165 152677322 -9922608 - MER45A DNA AcHobo 0 178 2 297 0 0 0 chrX 152677490 152677523 -9922407 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 450 299 0 9 chrX 152677525 152677632 -9922298 - L2 LINE L2 -15 3298 3193 385 353 68 16 chrX 152678097 152678287 -9921643 - L2 LINE L2 -6 3266 3067 846 306 112 14 chrX 152678774 152678986 -9920944 + L1M4 LINE L1 3525 3715 -2431 201 74 0 0 chrX 152678986 152679013 -9920917 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 846 306 112 14 chrX 152679013 152679382 -9920548 + L1M4 LINE L1 3715 4163 -1983 435 253 29 63 chrX 152679588 152679762 -9920168 - L1MEd LINE L1 -5940 179 12 472 200 108 8 chrX 152679768 152679898 -9920032 + L1ME4a LINE L1 5802 5944 -177 23 33 0 0 chrX 152680323 152680353 -9919577 + AT_rich Low_complexity Low_complexity 1 30 0 972 210 174 35 chrX 152680567 152680636 -9919294 + L1MD2 LINE L1 5997 6055 -304 5092 164 13 2 chrX 152680636 152681492 -9918438 + MER6 DNA MER2_type 1 865 0 972 210 174 35 chrX 152681492 152681711 -9918219 + L1MD2 LINE L1 6055 6333 -26 2405 135 41 21 chrX 152681711 152682147 -9917783 - MER65A LTR ERV1 0 445 1 972 210 174 35 chrX 152682147 152682167 -9917763 + L1MD2 LINE L1 6333 6349 -10 970 85 0 0 chrX 152682743 152682873 -9917057 - L1PA14 LINE L1 -268 5895 5766 1353 142 59 4 chrX 152682882 152683121 -9916809 + L1PA14 LINE L1 5903 6154 -7 2679 249 112 49 chrX 152683524 152684272 -9915658 - L2 LINE L2 -4 3309 2610 2031 160 0 0 chrX 152684272 152684578 -9915352 + AluJb SINE Alu 1 306 -6 2679 249 112 49 chrX 152684578 152685234 -9914696 - L2 LINE L2 -703 2610 1818 289 217 3 22 chrX 152685237 152685531 -9914399 + AluJo SINE Alu 3 341 0 462 285 16 0 chrX 152685533 152685656 -9914274 - L2 LINE L2 -1496 1818 1694 474 253 129 18 chrX 152685780 152685950 -9913980 + MER5A DNA MER1_type 1 189 0 1155 236 106 3 chrX 152686132 152686433 -9913497 - L2 LINE L2 -1626 1688 1357 885 276 80 14 chrX 152686440 152686715 -9913215 + L1MC/D LINE L1 5476 5768 -2040 21767 146 24 31 chrX 152686716 152688140 -9911790 - L1 LINE L1 -3076 4489 3057 2178 103 3 0 chrX 152688140 152688454 -9911476 - AluSq SINE Alu 0 313 2 21767 146 24 31 chrX 152688454 152688773 -9911157 - L1 LINE L1 -4508 3057 2737 538 103 23 0 chrX 152688773 152688789 -9911141 - AluSc SINE Alu -220 89 75 1599 72 0 10 chrX 152688789 152688998 -9910932 - AluY SINE Alu 0 311 105 538 103 23 0 chrX 152688998 152689068 -9910862 - AluSc SINE Alu -234 75 1 21767 146 24 31 chrX 152689068 152689497 -9910433 - L1 LINE L1 -4828 2737 2307 1879 168 0 3 chrX 152689497 152689814 -9910116 - AluSx SINE Alu 0 316 1 21767 146 24 31 chrX 152689814 152692058 -9907872 - L1 LINE L1 -5258 2307 12 391 224 43 71 chrX 152692068 152692357 -9907573 - L1M4 LINE L1 -1488 4658 4386 1492 261 117 43 chrX 152692480 152692917 -9907013 - L1M4 LINE L1 -1955 4191 3788 189 0 0 0 chrX 152692917 152692938 -9906992 + (CA)n Simple_repeat Simple_repeat 2 22 0 1492 261 117 43 chrX 152692938 152693252 -9906678 - L1M4 LINE L1 -2358 3788 3384 296 273 56 8 chrX 152693389 152693535 -9906395 - L1MEd LINE L1 -5098 1456 1303 235 228 0 18 chrX 152693536 152693593 -9906337 - L1MEd LINE L1 -4959 1086 1031 351 96 0 0 chrX 152694691 152694743 -9905187 + (TG)n Simple_repeat Simple_repeat 2 53 0 455 267 64 47 chrX 152694744 152694938 -9904992 + L1MC4 LINE L1 6704 6893 -1149 2471 118 6 11 chrX 152694938 152695304 -9904626 + THE1B LTR MaLR 1 364 0 455 267 64 47 chrX 152695304 152696305 -9903625 + L1MC4 LINE L1 6893 7983 -59 323 327 6 6 chrX 152697749 152697905 -9902025 + L1ME4a LINE L1 5756 5911 -210 24 32 0 0 chrX 152698662 152698693 -9901237 + AT_rich Low_complexity Low_complexity 1 31 0 1170 119 18 64 chrX 152699762 152699980 -9899950 - L1PA16 LINE L1 -1 6165 5958 475 291 23 40 chrX 152700169 152700344 -9899586 - MER5B DNA MER1_type -6 172 1 277 291 26 67 chrX 152700832 152700951 -9898979 - LTR67 LTR ERVL -361 190 59 318 153 0 0 chrX 152701389 152701448 -9898482 + (TG)n Simple_repeat Simple_repeat 1 59 0 676 326 36 0 chrX 152701594 152701818 -9898112 - MIR SINE MIR 0 262 31 398 122 33 13 chrX 152702759 152702887 -9897043 - MER53 DNA DNA 0 189 4 227 224 24 176 chrX 152702891 152703016 -9896914 - MIR SINE MIR -155 107 2 566 306 16 52 chrX 152703727 152704034 -9895896 - L1ME3A LINE L1 -243 5927 5632 1691 159 89 0 chrX 152704135 152704405 -9895525 + AluJb SINE Alu 1 294 -18 207 111 0 28 chrX 152704516 152704552 -9895378 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 4467 152 13 9 chrX 152704581 152706035 -9893895 - L1MA4 LINE L1 -284 6198 4743 498 34 0 0 chrX 152706035 152706094 -9893836 - THE1B LTR MaLR 0 364 306 5528 112 52 10 chrX 152706119 152706943 -9892987 - THE1B-int LTR MaLR -720 860 2 1948 120 31 81 chrX 152706944 152707153 -9892777 - THE1B LTR MaLR 0 364 181 2201 129 3 0 chrX 152707153 152707464 -9892466 - AluSx SINE Alu 0 312 1 1948 120 31 81 chrX 152707464 152707637 -9892293 - THE1B LTR MaLR -183 181 1 3240 150 22 3 chrX 152707637 152708231 -9891699 - L1MA4 LINE L1 -1581 4747 4143 2025 118 45 11 chrX 152708237 152708592 -9891338 - L1MA2 LINE L1 0 6304 5938 5106 128 30 8 chrX 152708607 152709459 -9890471 - L1MA2 LINE L1 0 7723 6853 11251 186 18 6 chrX 152709459 152711791 -9888139 - L1MA2 LINE L1 -1099 6466 4105 2159 143 19 32 chrX 152711787 152712199 -9887731 - L1MA2 LINE L1 -3922 3643 3237 * 4817 228 29 34 chrX 152712190 152714006 -9885924 - L1MA4 LINE L1 -2671 3657 1827 21 0 0 0 chrX 152714006 152714027 -9885903 + AT_rich Low_complexity Low_complexity 1 21 0 4817 228 29 34 chrX 152714027 152715027 -9884903 - L1MA4 LINE L1 -4501 1827 824 255 61 0 0 chrX 152715040 152715073 -9884857 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 3263 45 2 2 chrX 152715073 152715477 -9884453 - L1PA5 LINE L1 -16 6138 5735 1947 18 0 0 chrX 152715477 152715705 -9884225 + L1PA5 LINE L1 5495 5722 -432 * 4221 180 14 12 chrX 152715703 152715790 -9884140 - L1MA4 LINE L1 -4514 814 729 2111 133 10 0 chrX 152715790 152716099 -9883831 - AluSx SINE Alu 0 312 1 4221 180 14 12 chrX 152716099 152716822 -9883108 - L1MA4 LINE L1 -4599 729 3 991 204 14 9 chrX 152718651 152718862 -9881068 - MER20 DNA MER1_type -4 215 4 1232 201 79 50 chrX 152718930 152719309 -9880621 + MLT1B LTR MaLR 1 390 0 1120 141 0 24 chrX 152719793 152720006 -9879924 - L1M3 LINE L1 -645 5526 5319 3880 67 6 6 chrX 152720010 152720533 -9879397 + L1PA5 LINE L1 5629 6154 0 3277 139 51 2 chrX 152720533 152720629 -9879301 + L1MA9 LINE L1 5676 5766 -546 216 97 0 0 chrX 152720629 152720660 -9879270 + (CA)n Simple_repeat Simple_repeat 2 32 0 3277 139 51 2 chrX 152720660 152721162 -9878768 + L1MA9 LINE L1 5766 6309 -3 339 313 42 18 chrX 152721597 152721763 -9878167 - MIR SINE MIR -44 218 49 442 184 0 11 chrX 152721876 152721963 -9877967 + MLT1D LTR MaLR 1 86 -419 * 1818 216 45 9 chrX 152721962 152722407 -9877523 + MLT1C LTR MaLR 7 467 0 * 1963 189 64 2 chrX 152722407 152722813 -9877117 + MLT1D LTR MaLR 75 505 0 1547 153 20 63 chrX 152723099 152723400 -9876530 - AluJo SINE Alu -24 288 1 419 322 40 0 chrX 152723428 152723580 -9876350 - MIR SINE MIR -71 191 34 272 284 27 0 chrX 152724568 152724642 -9875288 + MIR SINE MIR 72 147 -115 408 177 125 0 chrX 152724643 152724739 -9875191 - MER69 DNA AcHobo -1 2525 2418 2472 75 0 10 chrX 152724957 152725264 -9874666 + AluY SINE Alu 1 304 -7 251 368 33 13 chrX 152725521 152725673 -9874257 + MIR3 SINE MIR 24 178 -30 468 86 0 0 chrX 152725685 152725755 -9874175 - MER41B LTR ERV1 -85 550 481 328 303 77 11 chrX 152725807 152726081 -9873849 - HAL1b LINE L1 -8 1340 1049 * 973 288 84 57 chrX 152726069 152727199 -9872731 + L1ME3A LINE L1 410 1601 -4709 348 184 105 0 chrX 152728872 152728948 -9870982 + L2 LINE L2 3189 3272 0 660 204 230 0 chrX 152729197 152729349 -9870581 - MER5A DNA MER1_type -2 187 1 27 29 0 0 chrX 152729530 152729564 -9870366 + AT_rich Low_complexity Low_complexity 1 34 0 3419 8 0 0 chrX 152729585 152729970 -9869960 - L1PA2 LINE L1 -1 6154 5770 6892 52 33 0 chrX 152729976 152730900 -9869030 - L1PA7 LINE L1 -3 6151 5213 259 203 27 0 chrX 152732177 152732251 -9867679 + (TA)n Simple_repeat Simple_repeat 1 76 0 1519 278 33 12 chrX 152733276 152733766 -9866164 + L1ME3A LINE L1 3269 3777 -2352 1643 176 110 19 chrX 152733766 152734129 -9865801 - MSTD LTR MaLR 0 396 1 1519 278 33 12 chrX 152734129 152734283 -9865647 + L1ME3A LINE L1 3777 3926 -2203 1552 263 31 50 chrX 152734332 152734975 -9864955 + L1M4 LINE L1 16 646 -5896 533 262 142 7 chrX 152735003 152735371 -9864559 + L1ME3A LINE L1 5515 5933 -220 1847 90 4 4 chrX 152735509 152735754 -9864176 - AluSc SINE Alu -64 245 1 2061 83 4 0 chrX 152736742 152737020 -9862910 - L1PA7 LINE L1 -6 6148 5870 3060 168 10 2 chrX 152737020 152737532 -9862398 + MLT2B1 LTR ERVL 3 518 -2 396 71 0 0 chrX 152737702 152737758 -9862172 + (TG)n Simple_repeat Simple_repeat 1 56 0 189 306 0 65 chrX 152737758 152737882 -9862048 - L2 LINE L2 -336 2936 2821 602 256 101 6 chrX 152738264 152738432 -9861498 - MIR SINE MIR -45 217 34 28 61 0 0 chrX 152738440 152738489 -9861441 + AT_rich Low_complexity Low_complexity 1 49 0 4798 146 30 13 chrX 152738543 152739679 -9860251 - L1PA16 LINE L1 0 6166 4999 562 226 7 0 chrX 152739699 152739836 -9860094 - L1 LINE L1 -1265 4881 4744 314 335 54 0 chrX 152739827 152740012 -9859918 - L1PA12 LINE L1 -5205 2376 2182 * 420 20 0 0 chrX 152740099 152740148 -9859782 + (TG)n Simple_repeat Simple_repeat 2 50 0 301 333 0 0 chrX 152740280 152740379 -9859551 - L1PA12 LINE L1 -5399 2182 2084 1030 320 31 44 chrX 152740500 152740748 -9859182 - L1PA12 LINE L1 -6177 1397 1147 2678 107 5 0 chrX 152740748 152741121 -9858809 - THE1C LTR MaLR 0 375 1 1030 320 31 44 chrX 152741121 152741490 -9858440 - L1PA12 LINE L1 -6427 1147 788 543 239 60 69 chrX 152741616 152741785 -9858145 + MIR SINE MIR 47 215 -47 1080 182 25 0 chrX 152741785 152741988 -9857942 + MER3 DNA MER1_type 2 209 0 543 239 60 69 chrX 152741988 152742036 -9857894 + MIR SINE MIR 215 262 0 264 196 0 0 chrX 152742631 152742677 -9857253 - L2 LINE L2 0 3313 3268 835 143 0 8 chrX 152742863 152742996 -9856934 - FLAM_C SINE Alu 0 133 2 22 35 0 0 chrX 152743361 152743390 -9856540 + AT_rich Low_complexity Low_complexity 1 29 0 493 321 42 81 chrX 152743508 152744007 -9855923 - L2 LINE L2 -209 3063 2583 193 258 16 16 chrX 152744007 152744069 -9855861 - L2 LINE L2 -970 2344 2283 470 293 69 77 chrX 152744099 152744478 -9855452 + MLT1I LTR MaLR 34 409 0 405 335 123 22 chrX 152744479 152745074 -9854856 - L2 LINE L2 -1036 2278 1624 303 360 35 0 chrX 152745824 152745938 -9853992 + L2 LINE L2 3192 3309 -4 804 169 20 0 chrX 152746303 152746451 -9853479 - L1P LINE L1 -1988 4158 4008 * 1461 124 18 4 chrX 152746450 152746727 -9853203 + L1PA15 LINE L1 5540 5953 -210 2008 128 37 37 chrX 152746727 152747102 -9852828 + THE1C LTR MaLR 1 375 0 9836 120 4 34 chrX 152747102 152748732 -9851198 + THE1C-int LTR MaLR 1 1580 0 1782 147 43 43 chrX 152748732 152749107 -9850823 + THE1C LTR MaLR 1 375 0 1130 155 10 0 chrX 152749107 152749301 -9850629 + L1PA15 LINE L1 5949 6144 -21 180 0 0 0 chrX 152749303 152749323 -9850607 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 480 284 62 17 chrX 152749496 152749672 -9850258 - MIR SINE MIR -44 218 35 511 206 59 0 chrX 152749987 152750089 -9849841 + MIR SINE MIR 155 262 0 198 191 0 0 chrX 152750094 152750141 -9849789 + (CAT)n Simple_repeat Simple_repeat 1 47 0 291 286 101 53 chrX 152750314 152750503 -9849427 + MIR3 SINE MIR 2 199 -9 2496 166 99 16 chrX 152750688 152751262 -9848668 - L1MD2 LINE L1 -418 5941 5320 1867 166 24 46 chrX 152751270 152751681 -9848249 + L1MD2 LINE L1 5957 6358 -1 2406 100 132 5 chrX 152751913 152752293 -9847637 + MSTA LTR MaLR 1 428 0 249 209 0 15 chrX 152752543 152752610 -9847320 - L1ME4a LINE L1 -2 6119 6054 32 0 0 23 chrX 152752617 152752636 -9847294 + AT_rich Low_complexity Low_complexity 1 19 -23 1983 146 3 0 chrX 152752636 152752924 -9847006 + AluSx SINE Alu 1 289 -23 32 0 0 23 chrX 152752924 152752947 -9846983 + AT_rich Low_complexity Low_complexity 19 42 0 225 175 0 0 chrX 152753007 152753047 -9846883 + (CA)n Simple_repeat Simple_repeat 1 40 0 388 286 63 8 chrX 152753313 152753439 -9846491 + MIR SINE MIR 56 188 -74 516 270 29 0 chrX 152753442 152753579 -9846351 + MIR SINE MIR 122 262 0 375 230 0 0 chrX 152754001 152754075 -9845855 + MER5A DNA MER1_type 29 102 -87 194 147 59 0 chrX 152754139 152754207 -9845723 + (TA)n Simple_repeat Simple_repeat 1 72 0 310 224 20 51 chrX 152754240 152754338 -9845592 + L1MC4 LINE L1 6614 6708 -1334 236 211 89 11 chrX 152754344 152754434 -9845496 - L1ME4a LINE L1 -17 6104 6008 21 57 0 0 chrX 152754440 152754475 -9845455 + AT_rich Low_complexity Low_complexity 1 35 0 2204 104 3 0 chrX 152754612 152754901 -9845029 - AluSp SINE Alu -17 296 7 402 312 137 0 chrX 152754905 152755139 -9844791 - L1ME4a LINE L1 -282 5839 5574 3855 200 63 38 chrX 152755215 152756272 -9843658 - L1MD2 LINE L1 -13 6346 5263 255 239 23 11 chrX 152756275 152756363 -9843567 + L1MC4a LINE L1 7635 7723 -85 346 187 33 22 chrX 152756436 152756527 -9843403 - L1MD2 LINE L1 -895 5251 5160 959 251 5 9 chrX 152757470 152757681 -9842249 - MER63A DNA MER1_type 0 210 1 2400 84 0 0 chrX 152757844 152758143 -9841787 - AluSc SINE Alu -8 301 3 197 267 181 17 chrX 152758470 152758586 -9841344 - L2 LINE L2 -899 2415 2281 318 282 27 0 chrX 152759178 152759288 -9840642 + MIR SINE MIR 140 252 -10 347 340 35 10 chrX 152759377 152759574 -9840356 - L3b LINE CR1 -248 1335 1134 397 317 14 19 chrX 152759689 152759864 -9840066 - MER5A DNA MER1_type 0 189 2 365 175 63 103 chrX 152760046 152760172 -9839758 - MIR SINE MIR -10 252 132 251 170 117 53 chrX 152760220 152760314 -9839616 - MIR SINE MIR 0 262 163 457 280 159 6 chrX 152761427 152761584 -9838346 + MER5A DNA MER1_type 9 189 0 269 153 14 0 chrX 152761760 152761832 -9838098 + A-rich Low_complexity Low_complexity 3 75 0 367 241 204 58 chrX 152762673 152762810 -9837120 + FRAM SINE Alu 1 156 -10 448 165 28 0 chrX 152762810 152762919 -9837011 + GA-rich Low_complexity Low_complexity 1 112 0 360 138 0 0 chrX 152762922 152762987 -9836943 + (GGGAA)n Simple_repeat Simple_repeat 4 68 0 1576 288 81 23 chrX 152763040 152763721 -9836209 + L1M2c LINE L1 168 1057 -6152 5207 211 32 22 chrX 152763756 152764938 -9834992 + L1M2c LINE L1 1665 2834 -4374 1825 180 0 20 chrX 152764938 152765244 -9834686 + AluJb SINE Alu 3 302 -10 5207 211 32 22 chrX 152765244 152766786 -9833144 + L1M2c LINE L1 2834 4103 -3105 2103 164 37 42 chrX 152766788 152767216 -9832714 + L1M1 LINE L1 13 438 -7127 200 274 0 0 chrX 152767387 152767438 -9832492 + (TG)n Simple_repeat Simple_repeat 2 52 0 233 348 11 0 chrX 152767461 152767553 -9832377 + MIR SINE MIR 156 248 -14 297 0 0 0 chrX 152767773 152767806 -9832124 + (CA)n Simple_repeat Simple_repeat 2 34 0 42716 33 23 0 chrX 152770200 152776210 -9823720 - L1PA3 LINE L1 0 6155 2 227 277 0 43 chrX 152776844 152776938 -9822992 - L1MC4 LINE L1 -1339 6703 6614 495 229 0 53 chrX 152777666 152777797 -9822133 + MIR SINE MIR 78 201 -61 3700 88 0 0 chrX 152777818 152778328 -9821602 + L1PB1 LINE L1 5282 5791 -360 523 204 0 13 chrX 152778328 152778480 -9821450 + (TA)n Simple_repeat Simple_repeat 1 150 0 2639 97 0 3 chrX 152778492 152778863 -9821067 + L1PB1 LINE L1 5782 6151 0 200 382 13 0 chrX 152778863 152778939 -9820991 + MIR SINE MIR 186 262 0 326 65 0 0 chrX 152779208 152779254 -9820676 + MADE1 DNA Mariner 1 46 -34 294 271 49 81 chrX 152779585 152779776 -9820154 - MIR SINE MIR -64 198 11 29 60 0 0 chrX 152781898 152781948 -9817982 + AT_rich Low_complexity Low_complexity 1 50 0 396 0 0 0 chrX 152782869 152782913 -9817017 + (CA)n Simple_repeat Simple_repeat 1 44 0 3117 164 2 22 chrX 152783613 152784204 -9815726 - L1MB5 LINE L1 0 6174 5596 892 198 17 0 chrX 152784248 152784420 -9815510 - L1MB5 LINE L1 -550 5624 5450 195 320 0 0 chrX 152784918 152784968 -9814962 - L2 LINE L2 -2 3311 3262 392 179 170 0 chrX 152785244 152785350 -9814580 + Charlie5 DNA MER1_type 1 124 -2488 906 144 56 0 chrX 152785350 152785510 -9814420 + Charlie5 DNA MER1_type 2234 2402 -210 3477 118 15 10 chrX 152785516 152786228 -9813702 + L1PA11 LINE L1 4780 5488 -686 * 9944 78 10 1 chrX 152786224 152787576 -9812354 - L1PA7 LINE L1 -796 5350 3987 6331 60 0 0 chrX 152787576 152788369 -9811561 + L1PA7 LINE L1 5355 6150 -4 4452 101 27 25 chrX 152788369 152788671 -9811259 + L1PA11 LINE L1 5476 5776 -398 207 100 0 0 chrX 152788671 152788701 -9811229 + (TA)n Simple_repeat Simple_repeat 1 30 0 4452 101 27 25 chrX 152788701 152789087 -9810843 + L1PA11 LINE L1 5776 6171 -3 592 237 21 34 chrX 152789088 152789324 -9810606 + Charlie5 DNA MER1_type 2353 2585 -27 3286 152 33 5 chrX 152789401 152789908 -9810022 - L1MA9 LINE L1 -4 6308 5817 204 40 0 0 chrX 152789908 152789933 -9809997 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 288 0 0 0 chrX 152789932 152789964 -9809966 + (TA)n Simple_repeat Simple_repeat 1 32 0 3286 152 33 5 chrX 152789933 152790054 -9809876 - L1MA9 LINE L1 -495 5817 5694 289 395 30 0 chrX 152791313 152791447 -9808483 - MIR3 SINE MIR -58 150 13 275 298 58 29 chrX 152792309 152792413 -9807517 + MIR SINE MIR 12 118 -144 199 254 16 63 chrX 152793161 152793224 -9806706 + MIR3 SINE MIR 108 167 -41 299 231 0 0 chrX 152793823 152793888 -9806042 + 7SK RNA RNA 40 104 -89 228 254 0 0 chrX 152794534 152794593 -9805337 + T-rich Low_complexity Low_complexity 1 59 0 215 273 0 0 chrX 152794625 152794669 -9805261 + L2 LINE L2 3012 3055 -258 539 227 141 49 chrX 152795150 152795335 -9804595 + MLT1E LTR MaLR 34 235 -358 1035 239 59 8 chrX 152795351 152795590 -9804340 + MLT1E LTR MaLR 341 591 -2 388 354 39 0 chrX 152795626 152795756 -9804174 + L2 LINE L2 3134 3268 -4 782 334 17 60 chrX 152795780 152796247 -9803683 + L3 LINE CR1 1066 1512 -65 225 0 0 0 chrX 152797407 152797432 -9802498 + (T)n Simple_repeat Simple_repeat 1 25 0 1566 138 15 4 chrX 152797978 152798246 -9801684 + L1MA4 LINE L1 6025 6295 -5 280 137 39 0 chrX 152798247 152798298 -9801632 + L1MB2 LINE L1 6113 6165 -6 293 347 16 25 chrX 152798307 152798428 -9801502 + MER5A DNA MER1_type 64 183 -6 573 301 21 0 chrX 152798478 152798621 -9801309 - MIR SINE MIR -70 192 47 245 313 20 68 chrX 152799028 152799175 -9800755 + L2 LINE L2 2708 2847 -467 355 256 98 15 chrX 152799514 152799647 -9800283 - L2 LINE L2 -2 3311 3168 914 292 112 22 chrX 152801459 152802132 -9797798 + L2 LINE L2 2572 3301 -12 327 326 105 17 chrX 152802176 152802357 -9797573 - MIR SINE MIR -25 237 41 1484 222 99 56 chrX 152802366 152802929 -9797001 - MLT1E1 LTR MaLR 0 654 7 552 339 73 46 chrX 152803436 152803872 -9796058 - L2 LINE L2 0 3272 2825 23 54 0 0 chrX 152804599 152804636 -9795294 + AT_rich Low_complexity Low_complexity 1 37 0 317 346 25 59 chrX 152804656 152804858 -9795072 + MIR SINE MIR 19 213 -49 312 292 0 56 chrX 152804935 152805024 -9794906 - L2 LINE L2 0 3272 3189 601 242 33 44 chrX 152805040 152805222 -9794708 + MIR SINE MIR 34 213 -49 753 261 11 56 chrX 152805949 152806217 -9793713 + MIR SINE MIR 3 258 -4 257 200 0 0 chrX 152806391 152806441 -9793489 - MIR SINE MIR -1 261 212 257 154 46 0 chrX 152809245 152809310 -9790620 + L1MA8 LINE L1 6220 6287 -4 23 54 0 0 chrX 152810307 152810344 -9789586 + AT_rich Low_complexity Low_complexity 1 37 0 6596 43 0 0 chrX 152810651 152811471 -9788459 + L1PA5 LINE L1 5354 6173 0 283 327 30 20 chrX 152812209 152812310 -9787620 - MIR SINE MIR -70 138 37 3654 30 0 0 chrX 152813872 152814303 -9785627 + L1P LINE L1 1461 1891 -4255 518 229 8 53 chrX 153015185 153015316 -9584614 - L1MD3 LINE L1 -345 7650 7526 294 239 0 0 chrX 153015326 153015397 -9584533 + L2 LINE L2 3243 3313 0 540 264 43 97 chrX 153016067 153016366 -9583564 - L2 LINE L2 -1 3312 3030 451 270 11 48 chrX 153017222 153017411 -9582519 - L1MC5 LINE L1 -824 7137 6956 786 168 0 0 chrX 153017414 153017551 -9582379 - L1MC3 LINE L1 -13 7772 7636 1206 254 25 11 chrX 153017554 153017916 -9582014 + L1MCb LINE L1 780 1146 -4899 903 287 32 36 chrX 153017921 153018451 -9581479 + L1MC5 LINE L1 7400 7927 -34 1148 181 68 93 chrX 153022195 153022335 -9577595 - MER50 LTR ERV1 0 734 592 207 0 0 0 chrX 153022335 153022358 -9577572 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1148 181 68 93 chrX 153022358 153022493 -9577437 - MER50 LTR ERV1 -142 592 465 2112 109 70 50 chrX 153022493 153022850 -9577080 - THE1B LTR MaLR 0 364 1 1148 181 68 93 chrX 153022850 153022883 -9577047 - MER50 LTR ERV1 -269 465 433 1046 124 47 0 chrX 153022877 153023046 -9576884 - MER50 LTR ERV1 -505 229 53 * 308 173 0 0 chrX 153023086 153023138 -9576792 - MER50 LTR ERV1 -682 52 1 8517 177 19 64 chrX 153024676 153026515 -9573415 - MER52A LTR ERV1 0 1755 1 2509 67 13 0 chrX 153027710 153028009 -9571921 + AluSp SINE Alu 1 303 -10 408 288 102 23 chrX 153028011 153028226 -9571704 - MIR SINE MIR -11 251 20 16074 124 29 68 chrX 153029339 153030506 -9569424 + Tigger2 DNA MER2_type 1 1212 -1506 378 42 0 0 chrX 153030506 153030554 -9569376 + (TA)n Simple_repeat Simple_repeat 1 48 0 16074 124 29 68 chrX 153030554 153032215 -9567715 + Tigger2 DNA MER2_type 1212 2718 0 283 250 98 36 chrX 153032267 153032379 -9567551 + MLT1I LTR MaLR 19 137 -272 462 238 42 30 chrX 153033913 153034081 -9565849 - L1M4 LINE L1 -1511 4635 4466 5335 91 19 5 chrX 153034504 153035260 -9564670 + L1PB2 LINE L1 5386 6151 0 3342 80 7 22 chrX 153035473 153035924 -9564006 + MLT2A1 LTR ERVL 1 444 0 2702 97 5 5 chrX 153036010 153036380 -9563550 - THE1C LTR MaLR 0 375 6 1838 188 60 40 chrX 153036420 153036872 -9563058 - MLT1C LTR MaLR -5 462 2 181 273 0 0 chrX 153037303 153037347 -9562583 - L2 LINE L2 -3 3269 3226 303 266 0 32 chrX 153037652 153037746 -9562184 + L2 LINE L2 3179 3269 -3 195 271 33 57 chrX 153040202 153040324 -9559606 + MIR SINE MIR 19 137 -125 382 279 101 6 chrX 153040845 153041003 -9558927 - MIR SINE MIR -1 261 89 366 184 0 0 chrX 153041717 153041793 -9558137 + (CGG)n Simple_repeat Simple_repeat 2 77 0 335 235 67 34 chrX 153042687 153042806 -9557124 + L2 LINE L2 3141 3263 -9 208 211 197 0 chrX 153042845 153042916 -9557014 + MIR3 SINE MIR 83 167 -41 438 290 88 112 chrX 153044203 153044568 -9555362 + L2 LINE L2 2915 3270 -2 210 333 51 88 chrX 153045617 153045890 -9554040 - L2 LINE L2 -3 3269 3007 4037 175 35 59 chrX 153045968 153046947 -9552983 + LTR5 LTR ERVK 1 955 -14 185 274 60 24 chrX 153046965 153047049 -9552881 - L2 LINE L2 -356 2957 2871 339 335 139 9 chrX 153047266 153047481 -9552449 - MIR SINE MIR 0 262 20 1811 246 60 14 chrX 153047612 153048096 -9551834 + MARNA DNA Mariner 65 570 -16 257 330 75 0 chrX 153048572 153048678 -9551252 - MIR SINE MIR -72 136 23 270 290 0 0 chrX 153048891 153048960 -9550970 + (TG)n Simple_repeat Simple_repeat 1 69 0 186 189 0 0 chrX 153049095 153049132 -9550798 + CT-rich Low_complexity Low_complexity 4 40 0 1464 181 34 0 chrX 153050301 153050593 -9549337 + L1MA4 LINE L1 5999 6300 0 2021 152 58 80 chrX 153051448 153051962 -9547968 + MLT1D LTR MaLR 1 503 -2 2391 186 78 31 chrX 153052736 153053275 -9546655 + Charlie1a DNA MER1_type 5 568 -887 2314 12 0 0 chrX 153053275 153053528 -9546402 - L1PA3 LINE L1 -448 5707 5455 3859 38 0 0 chrX 153053528 153053976 -9545954 + L1PA3 LINE L1 5706 6155 0 3767 191 51 11 chrX 153054035 153054876 -9545054 + Charlie1a DNA MER1_type 555 1429 -26 210 282 30 84 chrX 153054921 153055052 -9544878 - MIR SINE MIR -38 224 101 272 274 212 0 chrX 153055360 153055473 -9544457 + MIR SINE MIR 2 138 -124 2224 189 20 7 chrX 153055476 153055561 -9544369 - L1ME1 LINE L1 -196 5970 5886 2708 251 102 16 chrX 153055561 153056771 -9543159 - L1MA5A LINE L1 -408 5889 4565 1529 179 96 40 chrX 153056784 153057215 -9542715 + MLT1D LTR MaLR 1 505 0 331 145 116 0 chrX 153057227 153057296 -9542634 - L1MEc LINE L1 -1593 4622 4546 1447 184 39 36 chrX 153057301 153057638 -9542292 + MLT1A1 LTR MaLR 2 339 -26 3088 206 61 75 chrX 153057638 153058637 -9541293 - L1MEc LINE L1 -1684 4531 3547 2970 235 62 36 chrX 153058654 153059665 -9540265 - L1MEc LINE L1 -2768 3447 2410 513 121 0 121 chrX 153059665 153059781 -9540149 + MLT1E2 LTR MaLR 1 102 -524 2129 193 32 67 chrX 153059812 153060390 -9539540 - MLT1E2 LTR MaLR -67 558 3 2438 199 21 29 chrX 153060396 153060918 -9539012 + MLT1E2 LTR MaLR 105 622 -4 905 193 56 17 chrX 153060921 153061154 -9538776 - L1MEc LINE L1 -3942 2454 2213 592 268 71 27 chrX 153061131 153061355 -9538575 - L1MEc LINE L1 -6129 267 34 * 269 334 75 44 chrX 153061551 153061913 -9538017 + L2 LINE L2 2898 3270 -2 2420 90 13 3 chrX 153063020 153063330 -9536600 - AluSq SINE Alu 0 313 1 2092 105 0 0 chrX 153064882 153065148 -9534782 + AluSx SINE Alu 35 300 -12 1854 151 128 28 chrX 153065347 153065705 -9534225 - MLT2C1 LTR ERVL 0 397 4 316 258 11 45 chrX 153065780 153065869 -9534061 - L2 LINE L2 -1 3312 3227 523 253 274 16 chrX 153065908 153066098 -9533832 - MIR SINE MIR -10 252 14 241 318 69 26 chrX 153066304 153066493 -9533437 - L2 LINE L2 -1694 1620 1424 696 89 0 0 chrX 153066511 153066601 -9533329 - MER2 DNA MER2_type -254 91 2 1805 223 57 53 chrX 153067021 153067585 -9532345 + MER119 DNA MER1_type 18 583 0 247 349 76 25 chrX 153067639 153067914 -9532016 - L2 LINE L2 -641 2673 2385 730 277 114 66 chrX 153069544 153070074 -9529856 - L1ME4a LINE L1 -2 6119 5559 886 165 0 0 chrX 153070074 153070207 -9529723 + FLAM_C SINE Alu 1 133 0 730 277 114 66 chrX 153070207 153070239 -9529691 - L1ME4a LINE L1 -562 5559 5530 1752 266 88 25 chrX 153071098 153072166 -9527764 + L1MD2 LINE L1 4987 6115 -244 204 214 0 0 chrX 153074206 153074248 -9525682 + MIR SINE MIR 106 147 -115 492 257 38 16 chrX 153074879 153075062 -9524868 - MER5A DNA MER1_type 0 189 3 407 254 124 24 chrX 153077613 153077782 -9522148 - MIR SINE MIR -70 192 7 2557 59 0 0 chrX 153081180 153081484 -9518446 + AluY SINE Alu 1 304 -7 662 178 13 0 chrX 153081845 153081997 -9517933 + CT-rich Low_complexity Low_complexity 1 154 0 180 111 0 0 chrX 153082000 153082027 -9517903 + (TC)n Simple_repeat Simple_repeat 2 28 0 2339 105 0 0 chrX 153082642 153082947 -9516983 + AluSg SINE Alu 1 305 -5 1349 230 64 44 chrX 153082948 153083558 -9516372 + L1MC/D LINE L1 5182 5808 -745 975 333 97 39 chrX 153083622 153084578 -9515352 + L1M4 LINE L1 3562 4573 -1573 300 244 0 78 chrX 153085156 153085246 -9514684 + L1MC4 LINE L1 6618 6700 -1342 338 21 0 42 chrX 153086478 153086526 -9513404 + (CACCC)n Simple_repeat Simple_repeat 1 46 0 192 91 68 0 chrX 153086926 153086970 -9512960 + C-rich Low_complexity Low_complexity 1 47 0 479 304 75 26 chrX 153092855 153093082 -9506848 - MIR SINE MIR -12 250 13 2257 125 86 11 chrX 153094274 153094715 -9505215 - MER1A DNA MER1_type 0 529 1 1855 168 3 0 chrX 153094908 153095199 -9504731 - AluSx SINE Alu -20 292 1 1435 303 37 22 chrX 153095252 153096032 -9503898 - L1M4 LINE L1 -2926 3220 2429 2045 247 57 20 chrX 153096034 153096757 -9503173 - L1MD2 LINE L1 -136 6042 5303 1284 235 124 5 chrX 153096757 153097200 -9502730 + LTR54B LTR ERV1 1 496 -2 2012 289 35 8 chrX 153097200 153097452 -9502478 - L1MD2 LINE L1 -842 5304 5060 2451 77 0 16 chrX 153097452 153097792 -9502138 - AluSg SINE Alu 0 310 1 2012 289 35 8 chrX 153097792 153098461 -9501469 - L1MD2 LINE L1 -1086 5060 4358 441 85 98 37 chrX 153098678 153098760 -9501170 - L1PA7 LINE L1 -9 6145 6059 3132 51 0 0 chrX 153098777 153099170 -9500760 + L1PA7 LINE L1 5703 6095 -59 2602 231 91 71 chrX 153099227 153100375 -9499555 + L1MCb LINE L1 5 1174 -4871 940 213 41 65 chrX 153100469 153100896 -9499034 + LTR54 LTR ERV1 19 510 0 478 265 12 117 chrX 153101443 153101824 -9498106 + MER51-int LTR ERV1 493 2540 -3791 649 245 35 22 chrX 153101825 153102015 -9497915 + MER51-int LTR ERV1 3652 3822 -1114 * 1939 253 48 15 chrX 153102005 153102797 -9497133 + MER51-int LTR ERV1 3357 4418 -518 2004 192 38 24 chrX 153102810 153103227 -9496703 - Tigger2a DNA MER2_type -5 429 7 267 262 0 0 chrX 153103478 153103539 -9496391 + MER70-int LTR ERVL 4604 4664 -359 * 406 254 0 32 chrX 153103519 153103645 -9496285 + MER51-int LTR ERV1 6906 7027 -789 720 214 7 0 chrX 153103648 153103793 -9496137 + MER54B LTR ERVL 1 146 -647 666 193 0 0 chrX 153103874 153103988 -9495942 + L1M1 LINE L1 1119 1232 -6333 396 330 83 23 chrX 153105053 153105271 -9494659 - MIR SINE MIR -12 250 20 2197 113 0 7 chrX 153106503 153106795 -9493135 + AluSg SINE Alu 1 290 -20 1937 115 0 0 chrX 153107023 153107276 -9492654 + AluSx SINE Alu 36 288 -24 229 138 15 46 chrX 153107351 153107401 -9492529 + (TA)n Simple_repeat Simple_repeat 2 51 -13 2161 80 0 0 chrX 153107401 153107663 -9492267 - AluSg SINE Alu -19 291 30 229 138 15 46 chrX 153107663 153107677 -9492253 + (TA)n Simple_repeat Simple_repeat 51 64 0 1423 277 78 16 chrX 153107677 153108434 -9491496 - L1MCa LINE L1 -3028 3398 2595 7153 94 17 19 chrX 153108486 153109544 -9490386 - MER11C LTR ERVK -15 1056 1 298 259 107 46 chrX 153109568 153109784 -9490146 - L1MD2 LINE L1 -221 6138 5910 371 260 19 7 chrX 153110391 153110545 -9489385 - L1MCa LINE L1 -5213 1213 1058 1886 166 7 3 chrX 153110557 153110853 -9489077 - AluJo SINE Alu -15 297 1 2045 183 23 5 chrX 153110879 153111311 -9488619 - L1MB3 LINE L1 -3 6180 5741 288 228 0 25 chrX 153111488 153111567 -9488363 - L1MC3 LINE L1 0 7785 7709 228 311 0 0 chrX 153111605 153111666 -9488264 + MIR SINE MIR 201 261 -1 2238 211 31 20 chrX 153111755 153112305 -9487625 - MER68 LTR ERV1 -6 556 1 1847 187 69 36 chrX 153112305 153112798 -9487132 - HERVL68 LTR ERVL -12 3025 2517 4471 241 50 27 chrX 153112834 153114198 -9485732 - HERVL68 LTR ERVL -599 2438 1044 1918 194 72 17 chrX 153114203 153114662 -9485268 - LTR55 LTR ERV -17 531 48 180 250 0 0 chrX 153114731 153114779 -9485151 + A-rich Low_complexity Low_complexity 3 50 0 250 184 20 0 chrX 153114797 153114846 -9485084 - LTR55 LTR ERV -498 50 1 23 0 0 0 chrX 153115148 153115171 -9484759 + AT_rich Low_complexity Low_complexity 1 23 0 2336 108 0 22 chrX 153115178 153115494 -9484436 + AluSc SINE Alu 1 309 0 605 230 27 11 chrX 153115598 153115840 -9484090 + LTR54B LTR ERV1 1 287 -211 2160 186 16 14 chrX 153115840 153116265 -9483665 - MSTB LTR MaLR 0 426 1 8272 179 38 7 chrX 153116265 153117866 -9482064 - MSTB-int LTR MaLR 0 1651 2 2079 168 89 3 chrX 153117867 153118107 -9481823 - MSTB LTR MaLR 0 426 137 3825 64 10 0 chrX 153118107 153118607 -9481323 - LTR21A LTR ERV1 0 505 1 2079 168 89 3 chrX 153118607 153118758 -9481172 - MSTB LTR MaLR -289 137 1 575 153 54 0 chrX 153118758 153118868 -9481062 + LTR54 LTR ERV1 317 432 -78 245 380 38 16 chrX 153118874 153119058 -9480872 + MIR SINE MIR 32 219 -43 4490 95 5 9 chrX 153119062 153119706 -9480224 - MER51C LTR ERV1 -19 621 1 7000 48 26 2 chrX 153120133 153121009 -9478921 + MER11D LTR ERVK 1 897 0 182 238 0 0 chrX 153127392 153127434 -9472496 - MIR SINE MIR -72 136 95 212 338 14 0 chrX 153128676 153128750 -9471180 - MIR SINE MIR -73 189 115 591 337 83 27 chrX 153129785 153130302 -9469628 + L2 LINE L2 2395 2940 -374 2185 219 18 7 chrX 153130307 153130763 -9469167 + MLT1C LTR MaLR 1 461 -6 302 307 38 23 chrX 153130800 153130990 -9468940 - L1ME4a LINE L1 -238 5883 5688 236 297 35 14 chrX 153132535 153132680 -9467250 + (CACG)n Simple_repeat Simple_repeat 2 149 0 206 256 0 47 chrX 153132881 153132967 -9466963 + G-rich Low_complexity Low_complexity 4 85 0 * 271 300 0 36 chrX 153132905 153133045 -9466885 + (CGGGG)n Simple_repeat Simple_repeat 5 139 0 204 231 0 85 chrX 153133230 153133360 -9466570 + (CGGGG)n Simple_repeat Simple_repeat 5 123 0 282 106 0 0 chrX 153133419 153133466 -9466464 + (CGGGG)n Simple_repeat Simple_repeat 5 51 0 204 276 24 47 chrX 153134085 153134212 -9465718 + (CTGGGG)n Simple_repeat Simple_repeat 6 129 0 435 175 7 22 chrX 153136625 153136762 -9463168 + C-rich Low_complexity Low_complexity 3 137 0 300 309 11 0 chrX 153137017 153137111 -9462819 - L1MEd LINE L1 -5463 656 562 275 295 81 7 chrX 153137128 153137336 -9462594 - L1ME4a LINE L1 -755 5391 5171 300 189 22 11 chrX 153137617 153137707 -9462223 + GA-rich Low_complexity Low_complexity 1 91 0 380 164 35 42 chrX 153137763 153138197 -9461733 + GA-rich Low_complexity Low_complexity 1 431 0 185 94 31 0 chrX 153138253 153138285 -9461645 + GA-rich Low_complexity Low_complexity 2 34 0 431 142 37 46 chrX 153138301 153138626 -9461304 + GA-rich Low_complexity Low_complexity 1 322 0 987 289 33 10 chrX 153138655 153139050 -9460880 - HERV16 LTR ERVL -3615 1381 978 270 158 305 0 chrX 153139233 153139315 -9460615 - MER81 DNA DNA -7 107 1 1123 346 43 20 chrX 153139415 153140063 -9459867 - HERV16 LTR ERVL -4333 663 1 288 300 83 8 chrX 153140063 153140183 -9459747 - LTR16A LTR ERVL 0 450 322 203 291 0 18 chrX 153140282 153140337 -9459593 + L2 LINE L2 3219 3272 0 222 319 17 17 chrX 153140728 153140847 -9459083 - L2 LINE L2 -189 3083 2965 295 329 65 13 chrX 153142313 153142468 -9457462 + MIR SINE MIR 21 183 -79 449 168 302 54 chrX 153142751 153142799 -9457131 - L1MDa LINE L1 -4622 1918 1883 2284 97 0 13 chrX 153142799 153143099 -9456831 - AluSx SINE Alu -14 298 3 449 168 302 54 chrX 153143099 153143199 -9456731 - L1MDa LINE L1 -4657 1883 1733 839 214 0 68 chrX 153143199 153143405 -9456525 - AluJo SINE Alu -1 311 120 4085 220 39 12 chrX 153143412 153144447 -9455483 - L1MDa LINE L1 -4829 1711 649 693 235 6 18 chrX 153144450 153144616 -9455314 - L1MDa LINE L1 -6068 472 309 224 210 0 16 chrX 153144620 153144682 -9455248 + CT-rich Low_complexity Low_complexity 3 63 0 370 193 24 24 chrX 153144682 153144765 -9455165 - L1MDa LINE L1 -6256 284 202 696 205 16 16 chrX 153144767 153145141 -9454789 + GA-rich Low_complexity Low_complexity 1 374 0 857 198 39 6 chrX 153145147 153145329 -9454601 - L1MDa LINE L1 -6340 200 13 208 214 36 18 chrX 153146700 153146756 -9453174 + L2 LINE L2 3206 3262 -10 2463 103 3 0 chrX 153148584 153148895 -9451035 + AluSp SINE Alu 1 312 -1 315 324 34 34 chrX 153148896 153149072 -9450858 - LTR16A LTR ERVL -86 364 189 452 361 18 28 chrX 153149306 153149698 -9450232 - HERVL LTR ERVL -100 5327 4788 603 141 6 129 chrX 153149846 153150016 -9449914 + MER3 DNA MER1_type 51 199 -10 322 233 33 22 chrX 153150017 153150107 -9449823 - HERVL LTR ERVL -825 4829 4739 * 1103 269 15 4 chrX 153150097 153150368 -9449562 - HERVL LTR ERVL -2004 2992 2719 516 207 0 0 chrX 153151554 153151665 -9448265 - L1MB3 LINE L1 0 6183 6073 9279 181 47 76 chrX 153151708 153153617 -9446313 - L1PA16 LINE L1 -19 6147 4185 2404 102 0 3 chrX 153153617 153153930 -9446000 - AluSx SINE Alu 0 312 1 9279 181 47 76 chrX 153153930 153154355 -9445575 - L1PA16 LINE L1 -1981 4185 3749 1090 153 0 38 chrX 153154355 153154538 -9445392 - AluSg/x SINE Alu 0 312 137 9279 181 47 76 chrX 153154538 153154738 -9445192 - L1PA16 LINE L1 -2417 3749 3545 1801 165 3 34 chrX 153154738 153155060 -9444870 - AluJb SINE Alu 0 312 1 9279 181 47 76 chrX 153155060 153155290 -9444640 - L1PA16 LINE L1 -2621 3545 3310 774 111 63 24 chrX 153155290 153155416 -9444514 + FLAM_C SINE Alu 2 132 -1 9279 181 47 76 chrX 153155416 153156485 -9443445 - L1PA16 LINE L1 -2856 3310 2262 183 250 0 0 chrX 153157339 153157387 -9442543 + MIR SINE MIR 24 71 -137 205 162 0 0 chrX 153157430 153157467 -9442463 + (TG)n Simple_repeat Simple_repeat 1 37 0 306 0 0 0 chrX 153157776 153157810 -9442120 + (TG)n Simple_repeat Simple_repeat 1 34 0 192 77 0 0 chrX 153157810 153157836 -9442094 + (GA)n Simple_repeat Simple_repeat 2 27 0 467 310 7 7 chrX 153157891 153158033 -9441897 + MIR SINE MIR 23 164 -98 495 287 108 47 chrX 153158510 153158768 -9441162 + MER46C DNA MER2_type 6 279 -59 362 225 162 9 chrX 153159722 153159833 -9440097 + MIR SINE MIR 48 175 -87 315 319 9 0 chrX 153160149 153160265 -9439665 + MIR SINE MIR 80 196 -66 1712 125 0 0 chrX 153160432 153160664 -9439266 - AluSg/x SINE Alu -3 307 76 213 259 176 12 chrX 153161113 153161198 -9438732 - MIR SINE MIR -140 122 24 2174 120 0 3 chrX 153161198 153161499 -9438431 - AluSq SINE Alu -8 305 6 252 267 13 13 chrX 153163122 153163197 -9436733 + GA-rich Low_complexity Low_complexity 1 75 0 192 254 60 0 chrX 153163852 153163919 -9436011 - L2 LINE L2 -51 3221 3151 471 155 0 0 chrX 153164249 153164333 -9435597 + GA-rich Low_complexity Low_complexity 2 85 0 277 209 15 45 chrX 153164718 153164785 -9435145 + MLT1E1 LTR MaLR 1 65 -589 1724 144 41 10 chrX 153164801 153165092 -9434838 - MER2 DNA MER2_type 0 345 46 764 198 18 0 chrX 153165093 153165257 -9434673 + MLT1E LTR MaLR 440 577 -16 330 299 66 63 chrX 153165263 153165581 -9434349 + L2 LINE L2 600 918 -2396 2322 166 36 23 chrX 153165840 153166281 -9433649 - MLT1C LTR MaLR -1 466 20 363 268 98 54 chrX 153166295 153166500 -9433430 - HAL1 LINE L1 -39 2468 2255 411 237 20 59 chrX 153166530 153166682 -9433248 - L1MC5 LINE L1 -34 7927 7782 207 0 0 0 chrX 153166799 153166822 -9433108 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1794 223 68 14 chrX 153166932 153167345 -9432585 - LTR16A LTR ERVL 0 450 16 748 272 215 16 chrX 153167528 153167840 -9432090 + L2 LINE L2 2940 3313 0 198 320 56 16 chrX 153167882 153168007 -9431923 - L2 LINE L2 -225 3047 2918 23 33 0 0 chrX 153168237 153168267 -9431663 + GC_rich Low_complexity Low_complexity 1 30 0 371 231 12 12 chrX 153168523 153168696 -9431234 + CT-rich Low_complexity Low_complexity 1 173 0 480 311 18 0 chrX 153168720 153168932 -9430998 + CT-rich Low_complexity Low_complexity 1 215 0 503 286 67 22 chrX 153171440 153171664 -9428266 - MIR SINE MIR -28 234 1 234 330 18 27 chrX 153172034 153172146 -9427784 + MIR SINE MIR 20 130 -78 273 157 0 39 chrX 153172357 153172408 -9427522 - MIR SINE MIR -67 141 93 3988 178 78 19 chrX 153173790 153174152 -9425778 - L1MB7 LINE L1 0 6184 5845 2119 98 20 10 chrX 153174152 153174448 -9425482 - AluSq SINE Alu -14 299 1 3988 178 78 19 chrX 153174448 153174951 -9424979 - L1MB7 LINE L1 -339 5845 5267 2863 183 50 20 chrX 153176154 153176690 -9423240 + MER68 LTR ERV1 3 554 -8 455 228 40 104 chrX 153177900 153178102 -9421828 + MER5A DNA MER1_type 1 189 0 362 358 78 5 chrX 153178401 153178594 -9421336 - MIR SINE MIR -28 234 28 376 273 26 124 chrX 153178624 153178818 -9421112 + MIR SINE MIR 49 223 -39 362 237 54 11 chrX 153179622 153179738 -9420192 + MIR SINE MIR 14 132 -76 223 296 42 0 chrX 153180365 153180436 -9419494 + L2 LINE L2 2223 2296 -1018 203 289 0 0 chrX 153180507 153180559 -9419371 + C-rich Low_complexity Low_complexity 2 53 0 219 273 36 0 chrX 153180749 153180804 -9419126 - L2 LINE L2 -1 3312 3256 358 319 86 47 chrX 153180858 153181240 -9418690 + L2 LINE L2 2697 3110 -162 3600 48 43 0 chrX 153181240 153181679 -9418251 + LTR22A LTR ERVK 1 458 0 358 319 86 47 chrX 153181679 153181798 -9418132 + L2 LINE L2 3110 3223 -49 1711 178 85 34 chrX 153182400 153182787 -9417143 + MLT1C LTR MaLR 1 407 -60 305 283 127 12 chrX 153183794 153183967 -9415963 - L1MC5 LINE L1 -139 7822 7630 372 257 96 78 chrX 153184148 153184366 -9415564 - L1ME4a LINE L1 -157 5964 5743 222 214 36 18 chrX 153184854 153184910 -9415020 - L2 LINE L2 -10 3262 3206 970 320 114 40 chrX 153187064 153187871 -9412059 - L3 LINE CR1 -231 1346 480 * 1322 285 134 17 chrX 153187855 153188385 -9411545 + L2 LINE L2 2230 2821 -493 597 284 44 36 chrX 153188386 153188661 -9411269 - L1MC4 LINE L1 -457 7585 7309 221 299 35 11 chrX 153188739 153188826 -9411104 + L3 LINE CR1 756 844 -733 3769 172 16 37 chrX 153188834 153188906 -9411024 + L1MB3 LINE L1 5430 5502 -681 2036 102 0 17 chrX 153188906 153189201 -9410729 + AluSc SINE Alu 1 290 -19 3769 172 16 37 chrX 153189201 153189894 -9410036 + L1MB3 LINE L1 5502 6179 -4 398 222 32 24 chrX 153189929 153190055 -9409875 - L1MC4 LINE L1 -744 7298 7172 256 145 65 0 chrX 153191228 153191290 -9408640 - Charlie5 DNA MER1_type -87 2525 2460 204 211 11 137 chrX 153191992 153192087 -9407843 - MER5C DNA MER1_type -13 311 229 316 203 0 0 chrX 153192678 153192737 -9407193 - MER5A DNA MER1_type 0 189 131 1859 131 4 0 chrX 153192746 153193020 -9406910 + AluSx SINE Alu 1 275 -37 474 284 28 13 chrX 153193860 153194036 -9405894 - L1ME LINE L1 -319 5802 5638 2461 56 3 0 chrX 153194211 153194517 -9405413 + AluSg1 SINE Alu 2 308 -1 922 238 63 33 chrX 153194799 153195267 -9404663 - L1ME4a LINE L1 -11 6110 5639 1284 174 0 21 chrX 153197191 153197432 -9402498 + AluJo SINE Alu 54 289 -23 761 298 86 68 chrX 153197536 153198100 -9401830 + L3 LINE CR1 799 1378 -199 1990 103 12 44 chrX 153198100 153198421 -9401509 + AluSx SINE Alu 1 311 -1 761 298 86 68 chrX 153198421 153198508 -9401422 + L3 LINE CR1 1378 1462 -115 864 170 71 47 chrX 153198519 153198731 -9401199 + MER20 DNA MER1_type 2 218 -1 307 194 14 28 chrX 153199060 153199132 -9400798 - L1ME4a LINE L1 -2 6119 6049 189 279 141 85 chrX 153199639 153200015 -9399915 + L2 LINE L2 2544 2940 -374 403 269 137 29 chrX 153200053 153200228 -9399702 + L2 LINE L2 3120 3313 0 477 238 25 44 chrX 153200272 153200432 -9399498 - L1ME4a LINE L1 -2049 5759 5603 289 274 14 0 chrX 153200955 153201028 -9398902 - L1ME4a LINE L1 -2202 5606 5533 276 299 93 0 chrX 153201097 153201194 -9398736 + L2 LINE L2 3208 3313 0 802 163 0 0 chrX 153201289 153201424 -9398506 - FLAM_A SINE Alu 0 142 8 257 322 17 26 chrX 153201427 153201542 -9398388 - MIR SINE MIR -116 146 33 1091 154 0 0 chrX 153202886 153203068 -9396862 - MER53 DNA DNA -2 187 6 265 324 93 28 chrX 153203930 153204112 -9395818 + MIR SINE MIR 58 251 -11 441 279 42 68 chrX 153204668 153204858 -9395072 + L2 LINE L2 3092 3276 -37 566 254 36 30 chrX 153204948 153205113 -9394817 + MIR SINE MIR 50 215 -47 290 250 140 10 chrX 153206335 153206435 -9393495 + MER117 DNA MER1_type 2 114 -83 309 252 18 63 chrX 153206520 153206631 -9393299 + MIR SINE MIR 39 144 -64 427 143 43 0 chrX 153206631 153206701 -9393229 - LTR16C LTR ERVL 0 491 419 395 35 0 52 chrX 153206703 153206761 -9393169 - MLT2B1 LTR ERVL -2 518 464 225 0 0 0 chrX 153206764 153206789 -9393141 + (CA)n Simple_repeat Simple_repeat 2 26 0 2709 143 21 7 chrX 153206818 153207250 -9392680 - Tigger2 DNA MER2_type -1 2717 2280 312 204 0 0 chrX 153207265 153207319 -9392611 - Tigger2 DNA MER2_type -2662 56 3 295 265 0 0 chrX 153207370 153207453 -9392477 - L1MC4 LINE L1 -1346 6696 6614 2216 139 18 34 chrX 153207458 153207848 -9392082 - MLT2D LTR ERVL -41 479 1 1408 282 21 21 chrX 153207848 153207986 -9391944 - LTR16C LTR ERVL -68 423 286 2034 132 30 107 chrX 153207986 153208380 -9391550 + THE1B LTR MaLR 1 364 0 1408 282 21 21 chrX 153208380 153208660 -9391270 - LTR16C LTR ERVL -204 287 5 502 350 105 38 chrX 153208887 153209153 -9390777 + L2 LINE L2 2988 3271 -1 739 306 31 31 chrX 153209433 153209694 -9390236 - MLT1I LTR MaLR -2 407 147 231 231 58 0 chrX 153209728 153209780 -9390150 - MLT1I LTR MaLR -347 62 8 795 220 51 53 chrX 153210322 153210623 -9389307 + MLT1I LTR MaLR 100 542 0 1224 219 0 0 chrX 153210828 153211047 -9388883 + MER58A DNA MER1_type 1 219 -5 193 248 9 97 chrX 153211298 153211411 -9388519 - L2 LINE L2 -2761 553 451 187 220 176 33 chrX 153212287 153212378 -9387552 + L2 LINE L2 1861 1964 -1350 439 222 48 56 chrX 153212888 153213014 -9386916 + MIR3 SINE MIR 70 194 -14 334 307 74 6 chrX 153213296 153213459 -9386471 - L2 LINE L2 -839 2475 2302 373 366 160 20 chrX 153213827 153214226 -9385704 - L2 LINE L2 -12 3260 2806 701 270 72 57 chrX 153214250 153214751 -9385179 - MLT1H1 LTR MaLR -6 543 1 433 304 95 40 chrX 153214751 153215047 -9384883 - L2 LINE L2 -521 2793 2482 245 234 175 102 chrX 153215118 153215255 -9384675 - L2 LINE L2 0 3272 3126 466 314 62 16 chrX 153219733 153219927 -9380003 - MIR SINE MIR -12 250 48 330 164 0 0 chrX 153220126 153220181 -9379749 - MLT1I LTR MaLR -9 400 346 206 121 0 0 chrX 153220184 153220217 -9379713 + (A)n Simple_repeat Simple_repeat 1 33 0 363 253 24 77 chrX 153221195 153221227 -9378703 - L1ME4a LINE L1 -1 6120 6088 1111 206 105 44 chrX 153221227 153221571 -9378359 - MLT1A1 LTR MaLR 0 365 1 363 253 24 77 chrX 153221571 153221708 -9378222 - L1ME4a LINE L1 -33 6088 5960 211 261 42 42 chrX 153221775 153221894 -9378036 + L2 LINE L2 3116 3234 -79 622 113 104 9 chrX 153221895 153222010 -9377920 + MSTD LTR MaLR 271 396 0 305 281 0 0 chrX 153222013 153222077 -9377853 + L2 LINE L2 3242 3305 -8 2463 220 91 30 chrX 153222080 153222740 -9377190 + L1PA11 LINE L1 885 1584 -5997 216 0 0 0 chrX 153222771 153222795 -9377135 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2402 179 4 16 chrX 153222799 153223301 -9376629 + L1PA11 LINE L1 2403 2898 -4676 16639 151 27 12 chrX 153223301 153225437 -9374493 + L1PA11 LINE L1 3847 6029 -1583 2261 89 4 0 chrX 153225437 153225779 -9374151 + AluSp SINE Alu 1 343 0 16639 151 27 12 chrX 153225779 153227380 -9372550 + L1PA11 LINE L1 6029 7605 -7 198 143 0 0 chrX 153227408 153227443 -9372487 + (CA)n Simple_repeat Simple_repeat 1 35 0 540 233 106 36 chrX 153227604 153227964 -9371966 - L1ME4a LINE L1 -169 5952 5568 * 650 134 9 0 chrX 153227961 153228073 -9371857 + L1P LINE L1 4648 4760 -1386 214 27 0 54 chrX 153228680 153228717 -9371213 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 322 313 133 16 chrX 153228726 153228975 -9370955 - L1ME4a LINE L1 -1723 4423 4146 207 160 0 40 chrX 153229048 153229098 -9370832 + (TATAA)n Simple_repeat Simple_repeat 5 52 0 302 266 28 28 chrX 153229098 153229207 -9370723 - L1ME4a LINE L1 -244 5877 5769 566 206 12 41 chrX 153229222 153229392 -9370538 - L1MD3 LINE L1 0 7995 7831 486 128 35 0 chrX 153229392 153229478 -9370452 - Tigger5 DNA MER2_type 0 2323 2235 * 974 162 7 151 chrX 153229471 153229743 -9370187 - Tigger5 DNA MER2_type -2090 233 1 3335 186 170 12 chrX 153229743 153230656 -9369274 - L1MC4a LINE L1 -148 7660 6604 336 266 74 64 chrX 153230723 153231035 -9368895 - L1ME4a LINE L1 -2180 3966 3652 1967 187 56 29 chrX 153231044 153231494 -9368436 - MLT1C LTR MaLR 0 467 6 26 0 0 0 chrX 153231521 153231547 -9368383 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chrX 153231622 153231654 -9368276 + AT_rich Low_complexity Low_complexity 1 32 0 40189 35 25 1 chrX 153231674 153237671 -9362259 - L1PA3 LINE L1 -3 6152 9 222 297 27 0 chrX 153238797 153238871 -9361059 + MIR SINE MIR 152 227 -35 557 194 67 30 chrX 153238873 153239007 -9360923 - MIR SINE MIR -121 141 3 285 327 91 0 chrX 153239649 153239759 -9360171 - MIR3 SINE MIR -53 155 36 1419 235 34 44 chrX 153240476 153240978 -9358952 + MLT1D LTR MaLR 1 497 -8 580 188 94 29 chrX 153241079 153241249 -9358681 - LTR52 LTR ERVL -200 221 41 423 240 42 0 chrX 153241294 153241390 -9358540 + MIR SINE MIR 157 256 -6 508 269 219 36 chrX 153241432 153241766 -9358164 + L2 LINE L2 2119 2513 -801 405 274 127 0 chrX 153241884 153242041 -9357889 + MER5B DNA MER1_type 2 178 0 1397 176 0 7 chrX 153242094 153242366 -9357564 - L1M3 LINE L1 -574 5594 5325 892 149 18 48 chrX 153242370 153242558 -9357372 - AluSg/x SINE Alu 0 302 120 2803 220 56 37 chrX 153242558 153243908 -9356022 - L1M3 LINE L1 -774 5372 3915 16622 159 25 15 chrX 153243925 153247974 -9351956 - L1PB1 LINE L1 -5 6862 2723 198 0 0 0 chrX 153247974 153247996 -9351934 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 16622 159 25 15 chrX 153247996 153250746 -9349184 - L1PB1 LINE L1 -4144 2723 1 4620 226 54 55 chrX 153250755 153251720 -9348210 - L1M3 LINE L1 -2220 3926 2958 6975 62 13 29 chrX 153251720 153253408 -9346522 - SVA Other Other -683 1386 1 4620 226 54 55 chrX 153253408 153254214 -9345716 - L1M3 LINE L1 -3188 2958 2153 339 103 44 29 chrX 153254216 153254284 -9345646 - L1M3 LINE L1 -882 5452 5384 828 258 56 48 chrX 153254382 153254739 -9345191 + L1ME3A LINE L1 5731 6090 -80 350 116 75 14 chrX 153254827 153254973 -9344957 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 739 0 51 55 chrX 153254974 153255191 -9344739 + (TA)n Simple_repeat Simple_repeat 1 216 0 460 254 0 37 chrX 153255199 153255333 -9344597 - L1ME LINE L1 -528 5642 5514 605 154 197 0 chrX 153255617 153255734 -9344196 - MIR SINE MIR -73 189 50 2195 139 0 0 chrX 153255745 153256055 -9343875 - AluSx SINE Alu -2 310 1 3426 209 37 18 chrX 153256097 153256363 -9343567 - L1MB8 LINE L1 -2 6176 5917 722 75 0 0 chrX 153256363 153256457 -9343473 - L1PA5 LINE L1 -7 6147 6054 3426 209 37 18 chrX 153256457 153257600 -9342330 - L1MB8 LINE L1 -261 5917 4754 671 212 35 25 chrX 153259420 153259623 -9340307 + L1MB8 LINE L1 834 1038 -5504 2230 138 11 95 chrX 153259623 153259871 -9340059 - MSTB LTR MaLR 0 426 234 2266 101 0 14 chrX 153259871 153260168 -9339762 - AluSx SINE Alu -13 299 7 2230 138 11 95 chrX 153260168 153260384 -9339546 - MSTB LTR MaLR -192 234 1 8759 183 8 4 chrX 153260389 153262027 -9337903 - MSTB-int LTR MaLR -6 1645 2 2172 210 7 14 chrX 153262032 153262461 -9337469 - MSTB LTR MaLR 0 426 1 2340 241 66 16 chrX 153262482 153264058 -9335872 + L1MB8 LINE L1 1062 2788 -3856 1135 219 79 26 chrX 153264066 153264637 -9335293 + L1MB8 LINE L1 5120 5769 -875 1358 229 32 3 chrX 153264642 153265017 -9334913 - L1 LINE L1 -2994 3152 2767 3743 195 34 33 chrX 153265022 153265236 -9334694 + L1MB8 LINE L1 5788 6000 -676 1901 204 0 3 chrX 153265236 153265598 -9334332 - MLT1A1 LTR MaLR 0 365 5 3743 195 34 33 chrX 153265598 153266271 -9333659 + L1MB8 LINE L1 6000 6676 0 1003 320 118 19 chrX 153266446 153266976 -9332954 + L2 LINE L2 2736 3308 -5 1084 202 94 33 chrX 153268093 153268442 -9331488 - MSTB LTR MaLR 0 428 1 1604 286 52 65 chrX 153268756 153268921 -9331009 + MER115 DNA AcHobo 106 272 -421 477 0 0 0 chrX 153268921 153268974 -9330956 + (CA)n Simple_repeat Simple_repeat 2 54 0 1604 286 52 65 chrX 153268974 153269382 -9330548 + MER115 DNA AcHobo 272 672 -21 1973 183 34 0 chrX 153269404 153269754 -9330176 - MLT2D LTR ERVL -52 362 1 390 246 63 20 chrX 153270170 153270334 -9329596 + MIR SINE MIR 16 183 -67 3363 209 36 99 chrX 153270403 153271147 -9328783 + L1MB7 LINE L1 3070 3859 -2785 1606 206 0 10 chrX 153271147 153271453 -9328477 + AluJo SINE Alu 3 305 -7 923 77 0 0 chrX 153271454 153271618 -9328312 + AluSg/x SINE Alu 167 330 0 3363 209 36 99 chrX 153271618 153272173 -9327757 + L1MB7 LINE L1 3858 4399 -2245 6447 117 1 30 chrX 153272181 153273491 -9326439 - L1PB1 LINE L1 -1 6150 4883 2398 204 77 23 chrX 153273493 153274178 -9325752 + L1MB7 LINE L1 4385 5106 -1538 2265 179 8 42 chrX 153274179 153274682 -9325248 + L1MB7 LINE L1 6188 6673 -9 1211 145 20 0 chrX 153275782 153275982 -9323948 - MER3 DNA MER1_type -4 205 2 513 198 8 50 chrX 153276178 153276299 -9323631 + MER5B DNA MER1_type 7 122 -56 3854 181 46 8 chrX 153276301 153277084 -9322846 - L1MC3 LINE L1 0 7785 6973 1331 210 139 47 chrX 153277105 153277572 -9322358 - LTR10B LTR ERV1 -7 540 31 3534 193 33 25 chrX 153277590 153278350 -9321580 - L1MC3 LINE L1 -807 6978 6213 2044 154 14 22 chrX 153278350 153278706 -9321224 - THE1C LTR MaLR 0 375 23 4087 157 30 9 chrX 153278759 153279513 -9320417 - L1MC3 LINE L1 -1567 6218 5449 711 218 7 7 chrX 153279535 153279712 -9320218 - L1ME2 LINE L1 -7 6159 5983 2186 202 24 8 chrX 153279734 153280225 -9319705 + L1 LINE L1 2444 2942 -3204 * 3932 188 40 38 chrX 153280224 153281598 -9318332 - L1MB3 LINE L1 -42 6210 4816 229 170 0 0 chrX 153281601 153281654 -9318276 - AluJo SINE Alu 0 300 248 1034 206 0 0 chrX 153281658 153281828 -9318102 - AluJo SINE Alu -141 171 2 3902 214 26 3 chrX 153281830 153282744 -9317186 - L1MB3 LINE L1 -1387 4828 3894 2973 204 30 63 chrX 153282741 153284435 -9315495 - L1MB3 LINE L1 -2791 3424 1850 * 3023 213 21 36 chrX 153284432 153285185 -9314745 - L1MB8 LINE L1 0 6178 5437 3453 261 76 58 chrX 153285189 153286321 -9313609 - L1MEc LINE L1 -4534 1862 753 180 77 0 0 chrX 153286321 153286347 -9313583 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3453 261 76 58 chrX 153286347 153286422 -9313508 - L1MEc LINE L1 -5643 753 681 1864 171 0 16 chrX 153286422 153286737 -9313193 - AluJo SINE Alu 0 312 3 3453 261 76 58 chrX 153286737 153286792 -9313138 - L1MEc LINE L1 -5715 681 629 825 194 141 0 chrX 153286792 153286983 -9312947 - MER20 DNA MER1_type -1 218 1 3453 261 76 58 chrX 153286983 153287540 -9312390 - L1MEc LINE L1 -5767 629 7 260 145 13 92 chrX 153287533 153287609 -9312321 - L1MEc LINE L1 -3284 2931 2862 * 244 175 0 95 chrX 153287616 153287679 -9312251 - MLT2A2 LTR ERVL 0 453 397 22 35 0 0 chrX 153287680 153287709 -9312221 + AT_rich Low_complexity Low_complexity 1 29 0 1718 176 36 167 chrX 153287736 153288317 -9311613 - MLT2B3 LTR ERVL -49 505 1 1510 259 44 25 chrX 153288317 153288880 -9311050 - L1MEc LINE L1 -3356 2859 2286 2917 237 45 26 chrX 153288908 153289956 -9309974 - L1MEc LINE L1 -4124 2272 1205 265 215 52 74 chrX 153290321 153290456 -9309474 - L1ME4a LINE L1 -11 6110 5979 31 0 0 0 chrX 153290482 153290513 -9309417 + AT_rich Low_complexity Low_complexity 1 31 0 4639 35 0 0 chrX 153290695 153291243 -9308687 - L1PA3 LINE L1 -4 6151 5604 827 258 9 27 chrX 153291362 153291583 -9308347 - MIR SINE MIR -5 257 41 461 311 7 7 chrX 153291973 153292108 -9307822 + L2 LINE L2 3179 3313 0 271 206 73 0 chrX 153292096 153292164 -9307766 + MIR SINE MIR 182 254 -8 * 377 217 11 171 chrX 153292187 153292362 -9307568 + L2 LINE L2 3167 3313 0 206 195 53 9 chrX 153293540 153293653 -9306277 + (TA)n Simple_repeat Simple_repeat 2 119 0 262 222 32 0 chrX 153294758 153294821 -9305109 - MLT1K LTR MaLR -15 573 509 243 280 10 30 chrX 153294760 153294860 -9305070 - LTR67 LTR ERVL -15 542 445 * 257 311 14 81 chrX 153294959 153294977 -9304953 - MLT1K LTR MaLR -162 426 408 450 53 0 0 chrX 153294977 153295034 -9304896 + (CA)n Simple_repeat Simple_repeat 2 58 0 270 0 0 0 chrX 153295033 153295063 -9304867 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 257 311 14 81 chrX 153295034 153295192 -9304738 - MLT1K LTR MaLR -180 408 289 220 319 95 26 chrX 153295260 153295376 -9304554 + L3 LINE CR1 912 1035 -542 221 317 50 35 chrX 153295431 153295630 -9304300 + L3 LINE CR1 1153 1354 -223 249 333 10 10 chrX 153296084 153296183 -9303747 + MIR3 SINE MIR 87 185 -23 185 204 204 11 chrX 153297130 153297223 -9302707 - MIR SINE MIR -104 158 48 426 319 92 41 chrX 153297671 153297988 -9301942 - L2 LINE L2 -26 3287 2955 774 274 49 33 chrX 153298600 153298845 -9301085 - MIR SINE MIR -11 251 3 1924 177 40 3 chrX 153299015 153299365 -9300565 - MLT1A1 LTR MaLR -2 363 1 325 284 55 24 chrX 153301864 153301991 -9297939 - MIR3 SINE MIR -45 163 33 413 221 35 0 chrX 153303845 153303931 -9295999 + MER5A DNA MER1_type 16 104 -85 295 353 26 9 chrX 153303990 153304106 -9295824 + MIR SINE MIR 47 164 -98 2249 108 0 34 chrX 153304106 153304429 -9295501 + AluSx SINE Alu 1 312 0 2495 92 5 51 chrX 153304515 153304908 -9295022 - THE1C LTR MaLR 0 375 1 551 291 25 56 chrX 153306240 153306436 -9293494 + MER91B DNA MER1_type 1 190 0 26 0 0 0 chrX 153306782 153306808 -9293122 + AT_rich Low_complexity Low_complexity 1 26 0 716 241 57 88 chrX 153306897 153307249 -9292681 - MER102b DNA MER1_type 0 341 1 180 77 0 0 chrX 153308117 153308143 -9291787 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 88 0 0 chrX 153308270 153308327 -9291603 + AT_rich Low_complexity Low_complexity 1 57 0 247 220 0 0 chrX 153308336 153308395 -9291535 + MLT1K LTR MaLR 527 585 -3 630 248 19 8 chrX 153308675 153308859 -9291071 + MIR SINE MIR 38 223 -39 1094 253 0 0 chrX 153310289 153310510 -9289420 + MIR SINE MIR 2 222 -40 2938 173 0 51 chrX 153310602 153310684 -9289246 - MLT2B1 LTR ERVL 0 520 435 2266 90 0 0 chrX 153310684 153310974 -9288956 - AluSx SINE Alu -22 290 1 2938 173 0 51 chrX 153310974 153311439 -9288491 - MLT2B1 LTR ERVL -85 435 1 4741 144 21 48 chrX 153311441 153311505 -9288425 - ERVL-B1 LTR ERVL -9 5755 5691 2398 94 0 3 chrX 153311505 153311813 -9288117 + AluSp SINE Alu 1 307 -6 4741 144 21 48 chrX 153311813 153312643 -9287287 - ERVL-B1 LTR ERVL -73 5691 4885 7746 171 11 0 chrX 153312646 153314029 -9285901 + L1MA3 LINE L1 3754 5151 -995 644 170 0 0 chrX 153314029 153314129 -9285801 + MLT2B1 LTR ERVL 358 457 -63 604 0 13 13 chrX 153314129 153314206 -9285724 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 6375 124 20 21 chrX 153314206 153314300 -9285630 + L1MA3 LINE L1 5175 5268 -1037 1993 140 0 0 chrX 153314300 153314602 -9285328 + AluSg SINE Alu 1 302 0 6375 124 20 21 chrX 153314602 153314622 -9285308 + L1MA3 LINE L1 5268 5287 -1018 2589 135 11 6 chrX 153314622 153314984 -9284946 - THE1B LTR MaLR 0 364 1 10864 95 31 64 chrX 153314984 153316617 -9283313 - THE1B-int LTR MaLR 0 1580 1 2806 112 0 6 chrX 153316617 153316983 -9282947 - THE1B LTR MaLR 0 364 1 6375 124 20 21 chrX 153316983 153318000 -9281930 + L1MA3 LINE L1 5284 6304 -1 10336 151 19 2 chrX 153318023 153320763 -9279167 - ERVL-B1 LTR ERVL -909 4855 2036 257 381 34 8 chrX 153320763 153320881 -9279049 - MIR3 SINE MIR -85 123 3 3894 171 22 42 chrX 153321454 153322255 -9277675 + LTR1 LTR ERV1 1 785 0 367 305 61 8 chrX 153323191 153323322 -9276608 - MIR3 SINE MIR -10 198 61 2624 153 53 6 chrX 153323373 153323621 -9276309 - LTR39 LTR ERV1 0 783 548 8177 25 1 0 chrX 153323621 153325111 -9274819 - L1PA4 LINE L1 -2 6153 4662 2624 153 53 6 chrX 153325111 153325520 -9274410 - LTR39 LTR ERV1 -235 548 1 507 260 198 6 chrX 153326147 153326324 -9273606 + MIR SINE MIR 49 259 -3 292 329 15 80 chrX 153326371 153326508 -9273422 + L2 LINE L2 3124 3251 -21 554 336 118 39 chrX 153326562 153326943 -9272987 + L3 LINE CR1 1150 1560 -17 399 259 29 29 chrX 153327708 153327847 -9272083 + MIR SINE MIR 78 216 -46 2430 84 0 0 chrX 153327847 153328156 -9271774 + AluSc SINE Alu 1 309 0 209 274 206 20 chrX 153328723 153328825 -9271105 - MIR3 SINE MIR -85 123 3 2112 164 37 127 chrX 153329529 153329634 -9270296 - MLT2B1 LTR ERVL 0 520 407 343 0 43 0 chrX 153329634 153329681 -9270249 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2112 164 37 127 chrX 153329681 153330142 -9269788 - MLT2B1 LTR ERVL -113 407 5 335 281 77 51 chrX 153330878 153330927 -9269003 - L1M4 LINE L1 -3630 2516 2470 2294 107 0 10 chrX 153330927 153331227 -9268703 + AluSx SINE Alu 1 297 -15 335 281 77 51 chrX 153331227 153331412 -9268518 - L1M4 LINE L1 -3676 2470 2276 187 282 42 28 chrX 153332211 153332282 -9267648 - L2 LINE L2 -1 3312 3241 2265 115 0 13 chrX 153332508 153332821 -9267109 + AluSg SINE Alu 1 309 -1 414 294 49 0 chrX 153332825 153332968 -9266962 - MIR SINE MIR -56 206 57 513 128 0 0 chrX 153333082 153333160 -9266770 - L1MA9 LINE L1 0 6312 6235 43415 33 23 1 chrX 153333682 153339700 -9260230 - L1PA3 LINE L1 0 6155 3 248 322 64 47 chrX 153340358 153340529 -9259401 - HAL1 LINE L1 -27 2480 2307 2674 202 12 67 chrX 153340587 153341157 -9258773 + MLT1F LTR MaLR 4 542 0 7180 215 44 45 chrX 153341388 153342749 -9257181 - L1MC5 LINE L1 0 7961 6544 264 232 18 0 chrX 153342749 153342805 -9257125 - U7 snRNA snRNA -3 60 4 7180 215 44 45 chrX 153342805 153343535 -9256395 - L1MC5 LINE L1 -1417 6544 5815 511 247 0 40 chrX 153343535 153343685 -9256245 - L1MA10 LINE L1 -9 6325 5786 1172 242 62 22 chrX 153343698 153344025 -9255905 - L1MC5 LINE L1 -418 5748 5508 726 211 14 7 chrX 153344095 153344237 -9255693 + MIR SINE MIR 2 144 -118 3067 114 32 9 chrX 153344244 153344710 -9255220 - Tigger1 DNA MER2_type -1415 1003 527 2639 136 48 10 chrX 153344712 153345124 -9254806 - MSTA LTR MaLR 0 428 1 * 2948 160 39 4 chrX 153345124 153345600 -9254330 - Tigger1 DNA MER2_type -1891 527 35 330 118 176 0 chrX 153345614 153345682 -9254248 + L1MA9 LINE L1 6233 6312 0 280 175 0 63 chrX 153345775 153345838 -9254092 + MER96 DNA MER1_type? 1 59 -116 1318 218 52 65 chrX 153346012 153346379 -9253551 - MLT1A1 LTR MaLR -3 362 1 1333 312 110 11 chrX 153346931 153347643 -9252287 - L1ME4a LINE L1 -2 6119 5338 811 253 45 5 chrX 153347725 153347946 -9251984 - MIR SINE MIR -2 260 31 330 177 0 16 chrX 153348309 153348371 -9251559 + MIR SINE MIR 136 196 -66 866 305 37 0 chrX 153348857 153349152 -9250778 + L2 LINE L2 2453 2758 -556 344 331 0 33 chrX 153349156 153349307 -9250623 + MER5A DNA MER1_type 1 146 -43 2449 230 59 28 chrX 153349711 153350286 -9249644 - MLT1E LTR MaLR 0 593 1 267 269 194 38 chrX 153351841 153352027 -9247903 + L2 LINE L2 2403 2617 -697 5057 120 33 16 chrX 153352028 153352794 -9247136 - MER4E LTR ERV1 0 779 1 510 322 74 40 chrX 153352829 153353234 -9246696 + L2 LINE L2 2636 3072 -200 256 32 0 0 chrX 153353296 153353327 -9246603 - LTR7 LTR ERV1 -2 448 418 4235 152 8 1 chrX 153353354 153354012 -9245918 - HERVH LTR ERV1 -2564 5149 4488 3471 107 4 6 chrX 153354014 153354517 -9245413 - HERVH LTR ERV1 -3720 3993 3492 831 157 27 0 chrX 153354507 153354654 -9245276 - HERVH LTR ERV1 -4423 3290 3140 * 21116 88 6 19 chrX 153354648 153357675 -9242255 - HERVH LTR ERV1 -4726 2987 1 1680 152 110 61 chrX 153357677 153358104 -9241826 - LTR7 LTR ERV1 -2 448 1 336 345 14 7 chrX 153358144 153358289 -9241641 + L2 LINE L2 3168 3313 0 362 233 279 0 chrX 153358305 153358434 -9241496 + MIR SINE MIR 66 230 -32 299 308 144 0 chrX 153358650 153358754 -9241176 - L2 LINE L2 0 3272 3154 666 50 0 0 chrX 153361395 153361475 -9238455 - MADE1 DNA Mariner 0 80 1 4205 164 81 49 chrX 153361583 153362383 -9237547 + LTR1B LTR ERV1 1 826 0 948 320 77 17 chrX 153362529 153363104 -9236826 - L3 LINE CR1 -346 1231 623 475 212 166 71 chrX 153363414 153363739 -9236191 - L1ME4a LINE L1 -4 6117 5762 439 301 96 36 chrX 153363790 153364175 -9235755 - L1ME4a LINE L1 -2143 5665 5258 262 331 81 27 chrX 153364191 153364339 -9235591 + MIR SINE MIR 90 245 -17 457 226 9 9 chrX 153364577 153364683 -9235247 - MIR SINE MIR -83 179 74 297 353 50 0 chrX 153364711 153364830 -9235100 + MIR3 SINE MIR 76 200 -8 21 0 0 0 chrX 153364893 153364914 -9235016 + AT_rich Low_complexity Low_complexity 1 21 0 239 259 24 24 chrX 153365073 153365158 -9234772 + L2 LINE L2 2320 2404 -910 1028 237 77 84 chrX 153366179 153366584 -9233346 - L1MC4a LINE L1 -1037 6771 6370 2600 218 64 131 chrX 153366598 153367566 -9232364 - L1MDa LINE L1 -5578 962 60 544 184 42 2 chrX 153367628 153367759 -9232171 - L1P5 LINE L1 -712 5442 5294 21 0 0 0 chrX 153368122 153368143 -9231787 + AT_rich Low_complexity Low_complexity 1 21 0 189 205 103 0 chrX 153368372 153368411 -9231519 - MER5B DNA MER1_type -135 43 1 498 339 40 60 chrX 153369796 153370097 -9229833 + L2 LINE L2 2946 3240 -32 260 147 39 29 chrX 153370185 153370287 -9229643 + (TA)n Simple_repeat Simple_repeat 2 104 0 1524 154 0 4 chrX 153370287 153370521 -9229409 + MER46A DNA MER2_type 1 233 -3 357 24 0 0 chrX 153370522 153370564 -9229366 + (TG)n Simple_repeat Simple_repeat 1 42 0 528 208 102 121 chrX 153370565 153370756 -9229174 - MLT2C1 LTR ERVL -65 399 206 794 164 16 60 chrX 153370756 153370939 -9228991 - MLT1E3 LTR MaLR -385 239 65 528 208 102 121 chrX 153370939 153370996 -9228934 - MLT2C1 LTR ERVL -258 206 1 228 274 164 34 chrX 153371515 153371661 -9228269 + L2 LINE L2 3089 3253 -19 445 247 28 30 chrX 153371922 153372083 -9227847 - MIR SINE MIR -62 146 20 320 303 62 34 chrX 153372882 153373060 -9226870 - MIR SINE MIR -64 144 14 865 244 84 21 chrX 153373164 153373427 -9226503 - MLT1H LTR MaLR -244 305 20 347 312 100 51 chrX 153373568 153373879 -9226051 - L2 LINE L2 -467 2847 2522 2070 120 71 26 chrX 153374018 153374369 -9225561 - THE1C LTR MaLR -8 367 1 468 0 0 0 chrX 153374820 153374872 -9225058 + (TG)n Simple_repeat Simple_repeat 2 53 0 641 289 16 11 chrX 153375692 153375882 -9224048 - MIR SINE MIR -19 243 53 2368 75 0 3 chrX 153375890 153376183 -9223747 + AluY SINE Alu 1 292 -19 304 325 18 60 chrX 153376445 153376611 -9223319 + MIR SINE MIR 79 237 -25 461 196 28 9 chrX 153376714 153376821 -9223109 - MIR3 SINE MIR -19 189 81 637 286 41 5 chrX 153378783 153378992 -9220938 + MIR SINE MIR 14 233 -29 240 35 0 0 chrX 153380099 153380128 -9219802 + (CA)n Simple_repeat Simple_repeat 1 29 0 370 213 40 0 chrX 153380332 153380407 -9219523 + MIR SINE MIR 43 120 -88 1473 92 5 32 chrX 153380949 153381075 -9218855 + MSTC LTR MaLR 4 123 -305 2215 119 3 0 chrX 153381075 153381377 -9218553 - AluSx SINE Alu -9 303 1 1473 92 5 32 chrX 153381377 153381467 -9218463 + MSTC LTR MaLR 123 214 -214 718 85 0 0 chrX 153381471 153381565 -9218365 + MSTC LTR MaLR 335 428 0 1604 190 60 50 chrX 153381566 153381930 -9218000 + MLT1B LTR MaLR 23 390 0 1776 191 42 30 chrX 153382036 153382397 -9217533 - MLT1A1 LTR MaLR 0 365 1 292 255 47 47 chrX 153382403 153382509 -9217421 + MIR SINE MIR 40 145 -63 850 181 0 40 chrX 153383422 153383571 -9216359 + FRAM SINE Alu 1 142 -34 481 233 0 30 chrX 153383713 153383846 -9216084 - MER117 DNA MER1_type -68 129 1 267 291 46 82 chrX 153384673 153384869 -9215061 + L2 LINE L2 2866 3054 -218 279 0 0 0 chrX 153384908 153384939 -9214991 + (TC)n Simple_repeat Simple_repeat 2 32 0 431 349 53 0 chrX 153385509 153385678 -9214252 - MIR3 SINE MIR -3 205 28 782 215 55 0 chrX 153386855 153387018 -9212912 - MER69A DNA AcHobo -2 175 4 21 57 0 0 chrX 153387506 153387541 -9212389 + AT_rich Low_complexity Low_complexity 1 35 0 1431 250 50 24 chrX 153387876 153388292 -9211638 - MLT1J1 LTR MaLR -19 427 1 683 301 80 51 chrX 153389454 153390019 -9209911 + HAL1b LINE L1 67 647 -701 287 260 39 87 chrX 153390039 153390270 -9209660 + HAL1b LINE L1 714 933 -415 497 315 69 64 chrX 153390597 153390881 -9209049 + L1M4 LINE L1 2183 2473 -3673 1609 174 3 27 chrX 153390881 153391180 -9208750 + AluJo SINE Alu 3 294 -18 497 315 69 64 chrX 153391180 153391429 -9208501 + L1M4 LINE L1 2473 2719 -3427 467 217 6 137 chrX 153391476 153391651 -9208279 + MLT2E LTR ERVL 2 153 -475 225 294 68 48 chrX 153391837 153391983 -9207947 + MLT2E LTR ERVL 478 626 -2 831 191 22 38 chrX 153392213 153392396 -9207534 - MER58A DNA MER1_type 0 224 45 300 229 115 10 chrX 153393034 153393130 -9206800 - MIR SINE MIR -10 252 147 1345 228 130 20 chrX 153393861 153394301 -9205629 + L2 LINE L2 2697 3210 -103 3450 159 0 6 chrX 153394301 153394824 -9205106 - MLT2B1 LTR ERVL 0 520 1 1345 228 130 20 chrX 153394824 153394936 -9204994 + L2 LINE L2 3210 3308 -5 23 54 0 0 chrX 153394961 153394998 -9204932 + AT_rich Low_complexity Low_complexity 1 37 0 445 322 0 0 chrX 153395025 153395177 -9204753 - L1MC4a LINE L1 -1954 5854 5703 1704 162 62 16 chrX 153395191 153395711 -9204219 + L1PA10 LINE L1 4883 5894 -274 411 238 12 0 chrX 153395784 153395868 -9204062 - L2 LINE L2 0 3313 3229 263 137 0 20 chrX 153395885 153395936 -9203994 + (TTC)n Simple_repeat Simple_repeat 2 51 0 831 73 0 18 chrX 153396198 153396308 -9203622 - L1PA7 LINE L1 0 6154 6047 555 269 65 28 chrX 153397242 153397458 -9202472 + L2 LINE L2 3065 3288 -25 258 241 0 48 chrX 153397482 153397565 -9202365 + GA-rich Low_complexity Low_complexity 1 79 0 287 260 13 0 chrX 153400036 153400113 -9199817 + (CA)n Simple_repeat Simple_repeat 1 78 0 382 264 57 50 chrX 153400344 153400484 -9199446 - L2 LINE L2 0 3313 3173 1763 159 3 40 chrX 153400634 153400790 -9199140 - AluJb SINE Alu -21 291 150 2095 125 0 7 chrX 153400790 153401124 -9198806 - AluSx SINE Alu 0 312 1 1763 159 3 40 chrX 153401124 153401269 -9198661 - AluJb SINE Alu -162 150 1 382 325 70 83 chrX 153401300 153401614 -9198316 - L2 LINE L2 -70 3202 2893 1062 142 0 0 chrX 153402204 153402359 -9197571 + THE1B LTR MaLR 1 155 -209 298 238 0 0 chrX 153402361 153402424 -9197506 + MIR SINE MIR 195 257 -5 361 280 28 47 chrX 153402613 153402720 -9197210 - MIR SINE MIR -140 122 18 195 212 45 91 chrX 153403202 153403268 -9196662 - MIR SINE MIR -40 222 160 * 332 256 165 8 chrX 153403260 153403381 -9196549 + MIR SINE MIR 48 187 -75 436 302 113 13 chrX 153405012 153405171 -9194759 + MIR3 SINE MIR 12 186 -22 391 317 49 24 chrX 153405192 153405356 -9194574 + MER5A DNA MER1_type 21 188 -1 285 75 0 0 chrX 153405701 153405741 -9194189 + (CA)n Simple_repeat Simple_repeat 1 40 0 1083 170 59 22 chrX 153406423 153406706 -9193224 - MLT1F1 LTR MaLR 0 567 191 7669 50 0 2 chrX 153406792 153408050 -9191880 - L1PA5 LINE L1 -1 6153 4885 7137 45 3 1 chrX 153408056 153408928 -9191002 + L1P LINE L1 3949 4822 -1324 526 250 9 81 chrX 153408928 153409121 -9190809 - MLT1E LTR MaLR -369 173 1 241 282 51 67 chrX 153409907 153410102 -9189828 - L2 LINE L2 0 3313 3122 678 160 10 107 chrX 153410766 153410972 -9188958 + MER53 DNA DNA 4 189 0 443 283 18 24 chrX 153411016 153411163 -9188767 + MIR SINE MIR 2 156 -52 2459 155 26 0 chrX 153412155 153412535 -9187395 + MLT1B LTR MaLR 1 390 0 1834 154 40 0 chrX 153412791 153412967 -9186963 - AluSx SINE Alu -1 311 117 423 0 0 0 chrX 153412967 153413014 -9186916 + (TA)n Simple_repeat Simple_repeat 1 47 0 1834 154 40 0 chrX 153413014 153413136 -9186794 - AluSx SINE Alu -195 117 1 225 231 231 9 chrX 153413192 153413300 -9186630 - L2 LINE L2 -481 2833 2702 345 280 32 0 chrX 153413511 153413604 -9186326 + MLT1J1 LTR MaLR 1 96 -350 1134 221 75 26 chrX 153413719 153414026 -9185904 + MER2 DNA MER2_type 2 323 -22 550 306 12 18 chrX 153414054 153414224 -9185706 + MLT1J2 LTR MaLR 263 431 -19 683 299 34 103 chrX 153414263 153414651 -9185279 - L2 LINE L2 -8 3264 2904 289 0 49 0 chrX 153415616 153415657 -9184273 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 265 200 0 0 chrX 153415837 153415882 -9184048 - MIR SINE MIR -16 246 202 780 276 80 18 chrX 153416024 153416299 -9183631 + MLT1H1 LTR MaLR 187 478 -77 320 343 76 72 chrX 153416706 153417133 -9182797 + L2 LINE L2 2513 2954 -318 1972 195 47 73 chrX 153417133 153417641 -9182289 + LTR42 LTR ERVL 1 495 0 320 343 76 72 chrX 153417641 153417897 -9182033 + L2 LINE L2 2954 3207 -65 335 203 0 14 chrX 153419231 153419300 -9180630 + MER69 DNA AcHobo 2458 2525 -1 458 275 82 102 chrX 153419457 153419701 -9180229 - L2 LINE L2 -5 3267 3029 2045 141 36 33 chrX 153420137 153420500 -9179430 + THE1B LTR MaLR 1 364 0 11275 95 19 2 chrX 153420500 153422053 -9177877 + THE1B-int LTR MaLR 1 1580 0 2068 135 36 33 chrX 153422053 153422416 -9177514 + THE1B LTR MaLR 1 364 0 258 193 36 24 chrX 153422472 153422555 -9177375 - L1MB8 LINE L1 -51 6127 6044 211 309 41 10 chrX 153422578 153422675 -9177255 + MIR SINE MIR 151 250 -12 1942 237 81 11 chrX 153422690 153423247 -9176683 + L1M4 LINE L1 8 603 -5939 * 2138 253 41 41 chrX 153423244 153424625 -9175305 + L1M4 LINE L1 1416 2952 -3873 1122 209 44 3 chrX 153424682 153424979 -9174951 + L1M4 LINE L1 4968 5276 -1368 3110 159 2 26 chrX 153424979 153425513 -9174417 + MER54B LTR ERVL 1 521 -272 1938 122 17 30 chrX 153425517 153425878 -9174052 + Tigger2a DNA MER2_type 5 360 -74 1205 214 32 0 chrX 153425882 153426191 -9173739 + L1M4 LINE L1 5401 5719 -925 * 15558 159 16 2 chrX 153426186 153428851 -9171079 + L1MA3 LINE L1 16 2716 -4849 6032 149 20 18 chrX 153428858 153429260 -9170670 + L1MA3 LINE L1 5473 5872 -1852 2249 96 7 0 chrX 153429260 153429553 -9170377 + AluSq SINE Alu 1 295 -18 6032 149 20 18 chrX 153429553 153431407 -9168523 + L1MA3 LINE L1 5872 7724 0 24 0 0 0 chrX 153431508 153431532 -9168398 + AT_rich Low_complexity Low_complexity 1 24 0 4658 155 22 8 chrX 153431574 153431673 -9168257 - L1MA8 LINE L1 -431 5860 5764 279 0 0 0 chrX 153431673 153431704 -9168226 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 4658 155 22 8 chrX 153431704 153432944 -9166986 - L1MA8 LINE L1 -527 5764 4501 33 66 0 0 chrX 153432944 153433005 -9166925 + AT_rich Low_complexity Low_complexity 1 61 0 702 272 12 6 chrX 153433510 153433679 -9166251 - MER5B DNA MER1_type -6 172 3 212 324 152 19 chrX 153434850 153434955 -9164975 - L2 LINE L2 -3 3269 3151 231 188 47 0 chrX 153434959 153435023 -9164907 + L1M4 LINE L1 4782 4848 -1298 * 5532 227 79 11 chrX 153435020 153437697 -9162233 - L1MD2 LINE L1 -394 5965 3100 5534 94 5 4 chrX 153437715 153438522 -9161408 - L1PA10 LINE L1 -4 6164 5357 548 219 77 13 chrX 153438535 153438768 -9161162 - L1MD2 LINE L1 -3096 3050 2803 6073 92 26 2 chrX 153438956 153440525 -9159405 - L1PA10 LINE L1 0 6168 4586 1102 172 15 0 chrX 153440526 153440724 -9159206 - MER7A DNA MER2_type -147 199 1 741 273 0 5 chrX 153441541 153441728 -9158202 + L2 LINE L2 2183 2368 -946 400 136 45 23 chrX 153441732 153441820 -9158110 - L1PA16 LINE L1 0 6166 6077 589 277 87 29 chrX 153441824 153442030 -9157900 + MIR SINE MIR 45 262 0 189 319 65 36 chrX 153442063 153442201 -9157729 + MIR SINE MIR 121 262 0 1458 267 64 62 chrX 153442247 153443092 -9156838 - L2 LINE L2 -5 3308 2478 2566 198 4 2 chrX 153443104 153443609 -9156321 + L1P3 LINE L1 3 508 -5367 20173 169 5 19 chrX 153443609 153447789 -9152141 + L1P3 LINE L1 771 4911 -1550 832 149 0 68 chrX 153447789 153447950 -9151980 + MER7A DNA MER2_type 188 337 -9 280 191 62 0 chrX 153448047 153448120 -9151810 + Charlie8 DNA MER1_type 1361 1428 -989 424 311 116 11 chrX 153448986 153449176 -9150754 - L3 LINE CR1 -16 1561 1352 327 244 44 89 chrX 153449236 153449416 -9150514 + MIR SINE MIR 86 257 -5 272 321 62 40 chrX 153449445 153449669 -9150261 - L3 LINE CR1 -263 1314 1086 307 313 122 0 chrX 153452450 153452565 -9147365 - MIR3 SINE MIR -25 183 55 601 281 133 5 chrX 153452791 153452987 -9146943 - MIR SINE MIR -37 225 5 643 215 96 17 chrX 153452987 153453164 -9146766 - MER46C DNA MER2_type 0 338 148 312 267 30 40 chrX 153454483 153454584 -9145346 - MIR SINE MIR -91 171 72 23 0 0 0 chrX 153454937 153454960 -9144970 + AT_rich Low_complexity Low_complexity 1 23 0 1334 241 11 10 chrX 153455143 153455672 -9144258 - MLT2B1 LTR ERVL 0 520 83 1832 147 0 3 chrX 153455673 153455966 -9143964 - THE1B LTR MaLR 0 364 73 9427 98 37 36 chrX 153455966 153457451 -9142479 - THE1B-int LTR MaLR -94 1486 1 2095 141 6 3 chrX 153457451 153457784 -9142146 - THE1B LTR MaLR 0 364 31 7900 9 5 0 chrX 153457784 153458705 -9141225 + L1PA2 LINE L1 5227 6151 -4 27 0 0 0 chrX 153458711 153458738 -9141192 + AT_rich Low_complexity Low_complexity 1 27 0 255 64 0 0 chrX 153458758 153458797 -9141133 - THE1A LTR MaLR -321 34 1 474 157 0 0 chrX 153458797 153458880 -9141050 - MLT2B1 LTR ERVL -429 86 4 301 304 50 62 chrX 153458917 153459177 -9140753 - L1MC/D LINE L1 -2183 5625 5369 215 288 76 15 chrX 153459428 153459494 -9140436 + MIR SINE MIR 46 115 -93 423 223 9 0 chrX 153459548 153459660 -9140270 - MER53 DNA DNA 0 189 77 294 296 0 56 chrX 153459721 153459829 -9140101 + MIR SINE MIR 104 205 -57 504 267 43 19 chrX 153461338 153461499 -9138431 + MIR3 SINE MIR 43 207 -1 1339 181 103 31 chrX 153462796 153463221 -9136709 - Charlie4a DNA MER1_type -9 499 44 593 295 0 12 chrX 153463371 153463537 -9136393 + MIR3 SINE MIR 45 208 0 561 281 13 0 chrX 153463590 153463741 -9136189 + MIR SINE MIR 33 183 -40 192 179 0 0 chrX 153464054 153464093 -9135837 + CT-rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chrX 153464358 153464381 -9135549 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chrX 153464451 153464471 -9135459 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 638 271 73 6 chrX 153466025 153466202 -9133728 + MER91B DNA MER1_type 2 190 0 444 302 24 16 chrX 153466285 153466411 -9133519 - MIR3 SINE MIR -77 131 5 460 340 77 46 chrX 153466715 153467254 -9132676 + L2 LINE L2 2717 3267 -5 508 362 111 24 chrX 153467294 153467803 -9132127 - L2 LINE L2 -5 3267 2720 210 37 0 0 chrX 153467951 153467978 -9131952 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 449 311 47 7 chrX 153468981 153469129 -9130801 - MIR SINE MIR -56 206 53 652 94 47 0 chrX 153469410 153469537 -9130393 + GA-rich Low_complexity Low_complexity 4 136 0 206 333 15 0 chrX 153469968 153470034 -9129896 - MIR SINE MIR -98 110 44 243 308 45 53 chrX 153470282 153470415 -9129515 + MIR SINE MIR 2 133 -129 2244 245 20 18 chrX 153470415 153471263 -9128667 + L1M1 LINE L1 1279 2203 -4179 2919 231 25 12 chrX 153471284 153472244 -9127686 + L1M1 LINE L1 2569 3540 -2842 1825 166 20 3 chrX 153472249 153472598 -9127332 + L1MB2 LINE L1 1 355 -6508 * 5892 221 13 6 chrX 153472585 153474086 -9125844 + L1 LINE L1 2380 3890 -2256 1602 198 6 9 chrX 153474087 153474421 -9125509 + L1MB2 LINE L1 409 741 -5535 * 6532 202 20 54 chrX 153474419 153476416 -9123514 + L1MB2 LINE L1 1227 3174 -3688 1621 136 4 0 chrX 153476429 153476680 -9123250 + L1MB2 LINE L1 4688 4939 -1923 25062 59 3 3 chrX 153476710 153480905 -9119025 - L1PA5 LINE L1 -8 6146 1953 3267 91 0 0 chrX 153480900 153481371 -9118559 + L1PA10 LINE L1 1336 1806 -4340 * 6734 132 14 2 chrX 153481371 153482373 -9117557 + L1PA10 LINE L1 4216 5268 -900 500 0 0 16 chrX 153482373 153482434 -9117496 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 6734 132 14 2 chrX 153482434 153483342 -9116588 + L1PA10 LINE L1 5268 6163 -5 4282 166 15 51 chrX 153483366 153484353 -9115577 + L1MB2 LINE L1 5936 6887 0 229 366 0 10 chrX 153484355 153484456 -9115474 + MIR SINE MIR 140 239 -23 2254 237 32 23 chrX 153484556 153485126 -9114804 + MER90 LTR ERV1 1 575 0 556 303 30 63 chrX 153485345 153485616 -9114314 + MIR SINE MIR 1 262 0 584 231 45 28 chrX 153486547 153486727 -9113203 + MIR SINE MIR 21 200 -56 281 121 52 17 chrX 153487708 153487766 -9112164 + MER90 LTR ERV1 333 392 -222 389 273 47 8 chrX 153487814 153487942 -9111988 - L1ME2 LINE L1 -214 5950 5818 586 292 58 12 chrX 153487996 153488236 -9111694 - L1ME2 LINE L1 -360 5810 5560 403 262 57 0 chrX 153488249 153488390 -9111540 - LTR16B LTR ERVL -17 447 299 1695 269 40 30 chrX 153488412 153489506 -9110424 - L1ME2 LINE L1 -593 5571 4456 40863 32 21 1 chrX 153489602 153495621 -9104309 + L1HS LINE L1 13 6154 -1 4440 187 54 36 chrX 153495628 153496430 -9103500 - Charlie1 DNA MER1_type -45 2716 1883 2354 96 0 3 chrX 153496430 153496743 -9103187 - AluSx SINE Alu 0 312 1 4440 187 54 36 chrX 153496743 153497119 -9102811 - Charlie1 DNA MER1_type -878 1883 1516 267 263 0 0 chrX 153497642 153497718 -9102212 - MIR SINE MIR 0 262 187 1337 195 68 19 chrX 153498676 153498999 -9100931 + Charlie1 DNA MER1_type 1488 1826 -935 976 226 56 44 chrX 153499289 153499541 -9100389 - MIR SINE MIR -5 257 3 8685 129 30 50 chrX 153499591 153499834 -9100096 + THE1C-int LTR MaLR 54 300 -1280 6458 51 2 0 chrX 153499834 153500635 -9099295 + L1PA5 LINE L1 5348 6150 -4 8685 129 30 50 chrX 153500635 153501950 -9097980 + THE1C-int LTR MaLR 300 1580 0 1670 133 57 88 chrX 153501952 153502337 -9097593 + THE1C LTR MaLR 3 375 0 222 283 53 105 chrX 153502795 153503042 -9096888 + L2 LINE L2 1535 1768 -1546 2225 183 31 2 chrX 153503050 153503470 -9096460 - MSTB1 LTR MaLR 0 432 1 298 338 42 59 chrX 153503798 153504085 -9095845 + L2 LINE L2 1220 1501 -1813 7012 90 18 20 chrX 153504102 153505161 -9094769 + MER11C LTR ERVK 1 1057 -14 2804 270 57 11 chrX 153505338 153506380 -9093550 + L1M4 LINE L1 34 1122 -5274 272 80 0 20 chrX 153506381 153506431 -9093499 - L1MA2 LINE L1 -10 6294 6246 * 17020 181 18 8 chrX 153506425 153511594 -9088336 - L1PA13 LINE L1 -4 6810 1493 4974 200 4 17 chrX 153511591 153512517 -9087413 - L1PA13 LINE L1 -5873 914 1 * 1208 142 55 36 chrX 153512528 153512781 -9087149 - L1MA2 LINE L1 -45 6259 6002 3590 244 77 59 chrX 153512814 153513046 -9086884 + L1M4 LINE L1 1114 1340 -4907 2272 128 35 14 chrX 153513046 153513413 -9086517 + THE1C LTR MaLR 1 375 0 9821 100 61 38 chrX 153513413 153514958 -9084972 + THE1C-int LTR MaLR 1 1580 0 2275 108 71 3 chrX 153514958 153515309 -9084621 + THE1C LTR MaLR 1 375 0 3590 244 77 59 chrX 153515309 153515577 -9084353 + L1M4 LINE L1 1340 1602 -4645 1411 225 12 40 chrX 153515577 153515981 -9083949 - MLT2C1 LTR ERVL -2 395 3 3590 244 77 59 chrX 153515981 153516526 -9083404 + L1M4 LINE L1 1602 2136 -4111 2501 57 0 3 chrX 153516526 153516823 -9083107 + AluY SINE Alu 1 296 -15 3590 244 77 59 chrX 153516823 153517788 -9082142 + L1M4 LINE L1 2136 3082 -3165 1581 104 0 0 chrX 153517788 153518010 -9081920 + L1PA16 LINE L1 5936 6157 -9 3590 244 77 59 chrX 153518010 153518098 -9081832 + L1M4 LINE L1 3082 3167 -3080 2501 41 0 3 chrX 153518098 153518393 -9081537 - AluY SINE Alu -17 294 1 3590 244 77 59 chrX 153518393 153520681 -9079249 + L1M4 LINE L1 3167 5558 -689 858 218 28 0 chrX 153520751 153520967 -9078963 - L1M4 LINE L1 -1982 4164 3943 270 152 0 185 chrX 153520968 153521060 -9078870 + MLT1A2 LTR MaLR 1 61 -313 935 284 85 86 chrX 153521060 153521956 -9077974 + L1PA12 LINE L1 21 1450 -6131 2917 165 38 9 chrX 153522002 153522560 -9077370 - LTR1B LTR ERV1 -252 574 1 5830 250 35 27 chrX 153522636 153523765 -9076165 + L1PA12 LINE L1 1687 2806 -4778 2381 114 0 0 chrX 153523765 153524071 -9075859 - AluSp SINE Alu -7 306 1 5830 250 35 27 chrX 153524071 153524856 -9075074 + L1PA12 LINE L1 2806 3584 -4000 1836 121 103 0 chrX 153524856 153525129 -9074801 + AluSx SINE Alu 1 301 -11 5830 250 35 27 chrX 153525129 153526339 -9073591 + L1PA12 LINE L1 3584 4833 -2751 2078 169 56 75 chrX 153526342 153526863 -9073067 - MER52A LTR ERV1 -858 897 387 690 190 30 108 chrX 153526853 153527085 -9072845 - MER52A LTR ERV1 -1541 214 1 * 31 0 0 0 chrX 153527121 153527152 -9072778 + AT_rich Low_complexity Low_complexity 1 31 0 270 0 0 0 chrX 153527315 153527345 -9072585 + (T)n Simple_repeat Simple_repeat 1 30 0 365 351 40 40 chrX 153527444 153527646 -9072284 + L2 LINE L2 3071 3272 0 250 340 20 20 chrX 153528669 153528769 -9071161 - MIR SINE MIR -15 247 148 431 226 0 7 chrX 153528789 153528926 -9071004 + L1M4 LINE L1 3841 3976 -2170 3078 148 49 20 chrX 153528926 153529539 -9070391 + L1MC1 LINE L1 5703 6333 0 249 319 102 25 chrX 153530248 153530405 -9069525 - MIR3 SINE MIR -22 186 18 237 271 0 97 chrX 153530702 153530846 -9069084 + L2 LINE L2 2277 2406 -908 986 259 117 49 chrX 153530935 153531364 -9068566 - MLT1G1 LTR MaLR -66 529 72 264 59 0 0 chrX 153531784 153531818 -9068112 + (CA)n Simple_repeat Simple_repeat 2 35 0 482 295 30 24 chrX 153532168 153532334 -9067596 + L3 LINE CR1 1039 1205 -372 189 314 14 14 chrX 153532848 153532918 -9067012 + MIR3 SINE MIR 136 205 -3 207 186 0 0 chrX 153534386 153534429 -9065501 + GA-rich Low_complexity Low_complexity 3 45 0 922 264 62 38 chrX 153534669 153535090 -9064840 + MLT1J LTR MaLR 2 432 -79 1297 250 12 14 chrX 153536141 153536485 -9063445 - MLT1A1 LTR MaLR -11 354 12 1759 251 65 8 chrX 153536686 153537179 -9062751 - LTR33 LTR ERVL 0 521 1 374 243 21 129 chrX 153537181 153537461 -9062469 - MLT1J LTR MaLR -261 250 1 2233 195 0 24 chrX 153537816 153538319 -9061611 + L1MA9 LINE L1 3640 4130 -2016 * 3937 156 42 61 chrX 153538302 153538778 -9061152 + L1MA9 LINE L1 4812 5296 -1016 243 0 0 0 chrX 153538778 153538805 -9061125 + (CA)n Simple_repeat Simple_repeat 2 28 0 3937 156 42 61 chrX 153538805 153539689 -9060241 + L1MA9 LINE L1 5296 6153 -159 737 248 62 30 chrX 153540630 153540890 -9059040 - MIR SINE MIR 0 262 3 182 129 129 97 chrX 153541904 153541966 -9057964 - MIR SINE MIR -60 148 85 423 0 0 0 chrX 153542576 153542623 -9057307 + (TG)n Simple_repeat Simple_repeat 2 48 0 182 289 72 21 chrX 153545123 153545220 -9054710 - L2 LINE L2 -238 3034 2933 1915 170 82 3 chrX 153545223 153545587 -9054343 - MSTB LTR MaLR 0 426 34 26 30 0 0 chrX 153545987 153546020 -9053910 + AT_rich Low_complexity Low_complexity 1 33 0 297 301 59 103 chrX 153546088 153546360 -9053570 - L2 LINE L2 -3 3269 3010 2483 164 17 7 chrX 153547330 153547744 -9052186 - MER47B DNA MER2_type 0 418 1 271 272 78 29 chrX 153547751 153547854 -9052076 - MIR SINE MIR -61 201 94 321 239 32 25 chrX 153547907 153548036 -9051894 + L1ME3A LINE L1 5970 6099 -71 1707 204 60 13 chrX 153548754 153549219 -9050711 + LTR54B LTR ERV1 10 496 -2 212 346 20 10 chrX 153549228 153549329 -9050601 - MIR SINE MIR -112 150 49 566 266 47 18 chrX 153549485 153549654 -9050276 + MIR SINE MIR 13 186 -76 1902 170 3 38 chrX 153549659 153550029 -9049901 - MLT1A1 LTR MaLR -6 359 3 257 297 51 34 chrX 153550151 153550269 -9049661 - L2 LINE L2 -182 3090 2971 1688 65 0 0 chrX 153550456 153550670 -9049260 - L1PA5 LINE L1 -2 6152 5939 412 322 14 27 chrX 153553577 153553723 -9046207 - MIR3 SINE MIR -50 158 15 235 338 0 0 chrX 153554026 153554103 -9045827 + MIR SINE MIR 114 190 -72 206 121 0 0 chrX 153555307 153555340 -9044590 + (CA)n Simple_repeat Simple_repeat 2 34 0 2305 161 38 38 chrX 153555342 153555788 -9044142 + MLT2B1 LTR ERVL 1 446 -74 530 183 8 0 chrX 153555796 153555916 -9044014 + (CA)n Simple_repeat Simple_repeat 2 122 0 448 59 29 0 chrX 153555967 153556035 -9043895 + (TA)n Simple_repeat Simple_repeat 2 71 0 378 280 62 30 chrX 153556046 153556306 -9043624 - MER110A LTR ERV1 -27 464 195 377 209 35 0 chrX 153556406 153556492 -9043438 - MER110A LTR ERV1 -298 170 82 312 389 26 43 chrX 153556543 153556777 -9043153 + L1MD2 LINE L1 3 232 -6308 304 184 0 149 chrX 153556989 153557076 -9042854 - LTR8A LTR ERV1 0 727 654 5767 213 23 4 chrX 153557084 153559256 -9040674 - L1PA16 LINE L1 -3 6163 3979 757 191 49 52 chrX 153559258 153559546 -9040384 + pTR5 LTR ERV1 742 1028 -1410 4800 103 92 33 chrX 153559765 153560545 -9039385 + LTR12 LTR ERV1 1 826 0 2659 219 16 14 chrX 153560545 153561279 -9038651 - L1 LINE L1 -2167 3979 3244 6603 80 19 11 chrX 153561278 153562362 -9037568 - L1PA8A LINE L1 -2 6129 5042 8645 132 12 0 chrX 153562362 153563723 -9036207 - L1PA8A LINE L1 -2458 3688 2311 1467 252 25 19 chrX 153563749 153564230 -9035700 - L1PA16 LINE L1 -3340 2806 2323 2042 194 45 110 chrX 153564232 153564913 -9035017 - LTR8A LTR ERV1 -61 666 30 857 250 32 39 chrX 153564961 153565245 -9034685 + L1MD2 LINE L1 1527 1808 -4732 1097 307 133 7 chrX 153565245 153565704 -9034226 + REP3 LTR ERV 2 518 -44 1561 238 83 46 chrX 153565765 153566094 -9033836 + L1MD2 LINE L1 1803 2118 -4422 1712 190 3 0 chrX 153566094 153566384 -9033546 + AluJo SINE Alu 2 292 -20 1561 238 83 46 chrX 153566384 153566844 -9033086 + L1MD2 LINE L1 2118 2622 -3918 803 251 88 8 chrX 153566835 153567107 -9032823 - L1MB8 LINE L1 -34 6144 5857 * 502 336 109 46 chrX 153567113 153567704 -9032226 - L2 LINE L2 -21 3251 2613 1210 227 0 0 chrX 153568314 153568530 -9031400 - MER58A DNA MER1_type -8 216 1 3494 226 35 32 chrX 153568552 153569842 -9030088 + L1MD2 LINE L1 5245 6534 -219 21 0 0 0 chrX 153569872 153569893 -9030037 + AT_rich Low_complexity Low_complexity 1 21 0 578 188 133 0 chrX 153571993 153572158 -9027772 + MER53 DNA DNA 1 187 -2 1226 261 68 35 chrX 153572466 153572864 -9027066 + MLT1F1 LTR MaLR 157 567 0 219 244 0 0 chrX 153572928 153572973 -9026957 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chrX 153573232 153573261 -9026669 + AT_rich Low_complexity Low_complexity 1 29 0 2144 242 56 18 chrX 153573322 153573880 -9026050 - MLT1G LTR MaLR -2 588 10 246 301 213 24 chrX 153574655 153574948 -9024982 - L2 LINE L2 -218 3054 2642 1183 267 36 21 chrX 153574950 153575422 -9024508 - L1M4 LINE L1 -939 5207 4729 297 287 28 0 chrX 153575443 153575551 -9024379 - L1M4 LINE L1 -1563 4583 4473 227 133 22 0 chrX 153575552 153575597 -9024333 + CT-rich Low_complexity Low_complexity 3 48 0 381 289 81 55 chrX 153575654 153576072 -9023858 - L1MEd LINE L1 -5168 951 523 330 354 102 37 chrX 153576204 153576557 -9023373 - L1MEd LINE L1 -5741 378 3 647 152 91 0 chrX 153577196 153577328 -9022602 - L1MA8 LINE L1 -27 6264 6121 2226 110 3 0 chrX 153577329 153577620 -9022310 - AluSq SINE Alu -21 292 1 4909 167 9 11 chrX 153577647 153578980 -9020950 + L1PA16 LINE L1 4723 6056 -110 274 164 0 0 chrX 153578982 153579037 -9020893 + L1PA15 LINE L1 6111 6165 0 * 4436 141 19 14 chrX 153579028 153579761 -9020169 - L1MA8 LINE L1 -177 6114 5378 2536 191 9 28 chrX 153579766 153580227 -9019703 - MSTB2 LTR MaLR -4 453 2 446 286 85 52 chrX 153580281 153580529 -9019401 + MIR SINE MIR 3 258 -4 284 162 0 15 chrX 153580580 153580648 -9019282 + (TA)n Simple_repeat Simple_repeat 1 67 0 237 204 0 41 chrX 153580921 153580970 -9018960 + L2 LINE L2 3218 3264 -8 1072 283 83 41 chrX 153581738 153582229 -9017701 - LTR33 LTR ERVL 0 521 10 883 341 35 9 chrX 153582452 153582886 -9017044 - ERVL LTR ERVL -369 5395 4951 2676 226 85 14 chrX 153582887 153583521 -9016409 + MER76 LTR ERV 10 688 0 1226 312 63 45 chrX 153583525 153583725 -9016205 - ERVL LTR ERVL -817 4947 4752 221 0 35 0 chrX 153583725 153583754 -9016176 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1226 312 63 45 chrX 153583754 153583773 -9016157 - ERVL LTR ERVL -1012 4752 4735 13008 45 4 0 chrX 153583773 153586044 -9013886 - L1PA5 LINE L1 -9 6145 3859 1226 312 63 45 chrX 153586044 153586439 -9013491 - ERVL LTR ERVL -1029 4735 4321 1228 138 98 75 chrX 153586442 153586696 -9013234 + LTR12 LTR ERV1 1 260 -454 386 203 0 0 chrX 153586696 153586775 -9013155 + LTR30 LTR ERV1 546 624 -98 725 152 0 5 chrX 153586775 153586897 -9013033 + LTR12 LTR ERV1 479 583 -131 786 255 21 21 chrX 153586913 153587101 -9012829 - ERVL LTR ERVL -1460 4304 4117 351 0 0 0 chrX 153587183 153587222 -9012708 + (TG)n Simple_repeat Simple_repeat 2 40 0 344 82 20 0 chrX 153587225 153587274 -9012656 - L1PB1 LINE L1 -7 6860 6811 7195 197 92 16 chrX 153587275 153589757 -9010173 - L1PB1 LINE L1 -318 6549 3850 * 17121 118 65 5 chrX 153589755 153592916 -9007014 - L1PB1 LINE L1 -3345 3517 167 257 254 105 18 chrX 153592917 153593031 -9006899 - ERVL LTR ERVL -1739 4025 3902 959 251 144 25 chrX 153593455 153593774 -9006156 - LTR18A LTR ERVL 0 357 1 43452 123 7 3 chrX 153593775 153599799 -9000131 - HERVL18 LTR ERVL 0 6047 1 990 255 145 22 chrX 153599805 153600123 -8999807 - LTR18A LTR ERVL 0 357 1 216 0 0 0 chrX 153600316 153600340 -8999590 + (TG)n Simple_repeat Simple_repeat 2 25 0 1397 284 42 26 chrX 153600341 153600771 -8999159 - LTR16A LTR ERVL -2 448 12 359 355 16 11 chrX 153600853 153601065 -8998865 - HERV16 LTR ERVL -69 5383 4754 309 348 0 0 chrX 153601452 153601564 -8998366 - HERV16 LTR ERVL -1170 4594 4483 427 295 90 43 chrX 153601701 153601935 -8997995 - HERV16 LTR ERVL -1800 3964 3720 605 348 4 17 chrX 153602006 153602242 -8997688 - HERV16 LTR ERVL -2277 3487 3255 1077 299 47 21 chrX 153602275 153602660 -8997270 - HERV16 LTR ERVL -2776 2220 1826 3636 286 50 19 chrX 153602823 153603980 -8995950 - HERV16 LTR ERVL -3420 1576 384 259 215 54 43 chrX 153604058 153604151 -8995779 - HERV16 LTR ERVL -4787 209 116 929 284 47 0 chrX 153604250 153604528 -8995402 - LTR16A LTR ERVL -2 448 158 559 285 163 9 chrX 153604659 153604994 -8994936 - L2 LINE L2 -211 3061 2670 581 254 29 0 chrX 153604998 153605136 -8994794 - MER5B DNA MER1_type 0 178 37 234 264 160 24 chrX 153605029 153605154 -8994776 + MER5A DNA MER1_type 43 184 -5 * 461 191 56 136 chrX 153605694 153605826 -8994104 - MER106B DNA MER1_type 0 1059 918 1661 198 38 69 chrX 153605826 153606305 -8993625 + MLT2C2 LTR ERVL 1 464 0 461 191 56 136 chrX 153606305 153606422 -8993508 - MER106B DNA MER1_type -141 918 1 853 238 51 19 chrX 153606422 153606636 -8993294 + MIR SINE MIR 31 251 -11 220 221 132 15 chrX 153606680 153606748 -8993182 + MIR SINE MIR 6 81 -181 263 174 0 0 chrX 153606812 153606858 -8993072 + MER5B DNA MER1_type 130 175 -3 592 260 7 14 chrX 153606862 153607008 -8992922 - L2 LINE L2 -642 2672 2528 * 1030 271 54 35 chrX 153606997 153607421 -8992509 + L2 LINE L2 2825 3256 -57 368 316 107 6 chrX 153608040 153608208 -8991722 - MIR SINE MIR -11 251 67 561 229 106 48 chrX 153608567 153608755 -8991175 - MIR SINE MIR -59 203 5 240 253 38 51 chrX 153608930 153609009 -8990921 + L2 LINE L2 3193 3270 -2 2244 126 139 13 chrX 153609035 153609415 -8990515 + MSTA LTR MaLR 1 428 0 1584 194 69 26 chrX 153609589 153609939 -8989991 + MLT1A1 LTR MaLR 1 365 0 3369 178 25 41 chrX 153610285 153611020 -8988910 - L1MB1 LINE L1 0 6168 5446 767 240 23 12 chrX 153612941 153613112 -8986818 - MER45A DNA AcHobo -4 174 2 333 278 0 0 chrX 153613559 153613656 -8986274 + L1M LINE L1 5306 5402 -2406 1696 211 3 17 chrX 153613673 153614033 -8985897 + MLT1A1 LTR MaLR 10 364 -1 503 243 101 40 chrX 153614086 153614362 -8985568 + L1MC/D LINE L1 873 1165 -5231 813 222 72 0 chrX 153614363 153614570 -8985360 + L1MC/D LINE L1 3831 4052 -2163 1972 215 96 91 chrX 153614649 153615624 -8984306 - MER97b DNA MER1_type? 0 1053 71 204 67 0 0 chrX 153615624 153615654 -8984276 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1972 215 96 91 chrX 153615654 153615708 -8984222 - MER97b DNA MER1_type? -982 71 19 571 172 35 30 chrX 153618352 153618550 -8981380 + L1MC/D LINE L1 5324 5522 -2355 * 652 234 109 8 chrX 153618546 153618803 -8981127 + L1MC3 LINE L1 1094 1376 -5231 1412 249 85 12 chrX 153618805 153619443 -8980487 + L1MB7 LINE L1 3763 4446 -1700 3152 185 20 14 chrX 153619514 153620206 -8979724 + L1MB7 LINE L1 5446 6141 -43 996 186 24 20 chrX 153620214 153620461 -8979469 + L1MC3 LINE L1 1701 1948 -4478 * 5071 148 41 32 chrX 153620459 153621360 -8978570 - L1MA7 LINE L1 0 6291 5400 4778 82 15 12 chrX 153621360 153622043 -8977887 - L1PA10 LINE L1 0 6168 5484 5071 148 41 32 chrX 153622043 153622259 -8977671 - L1MA7 LINE L1 -891 5400 5188 1880 174 0 0 chrX 153622259 153622546 -8977384 - AluJo SINE Alu -24 288 2 5071 148 41 32 chrX 153622546 153622814 -8977116 - L1MA7 LINE L1 -1103 5188 4882 7847 249 34 27 chrX 153622820 153622981 -8976949 + L1MC3 LINE L1 2036 2194 -4232 2554 68 0 7 chrX 153622981 153623291 -8976639 - AluY SINE Alu -3 308 1 7847 249 34 27 chrX 153623291 153626291 -8973639 + L1MC3 LINE L1 2194 5177 -1249 311 138 17 0 chrX 153626313 153626371 -8973559 + L1MC3 LINE L1 5846 5904 -1881 * 5174 201 51 24 chrX 153626368 153627875 -8972055 + L1MC3 LINE L1 5187 5682 -744 783 184 7 0 chrX 153627869 153628021 -8971909 + L1MC3 LINE L1 7562 7714 -351 * 1052 125 183 0 chrX 153628021 153628229 -8971701 - Tigger5 DNA MER2_type 0 2323 2078 431 221 32 0 chrX 153628219 153628314 -8971616 - Tigger5 DNA MER2_type -2225 98 1 * 808 138 48 0 chrX 153628314 153628459 -8971471 + L1MC3 LINE L1 7713 7864 -201 951 123 0 0 chrX 153628459 153628589 -8971341 + AluSg/x SINE Alu 170 299 -11 862 176 62 0 chrX 153628590 153628783 -8971147 + L1MC3 LINE L1 7860 8064 -1 285 374 8 23 chrX 153628849 153628980 -8970950 - MIR SINE MIR -63 145 17 404 273 0 0 chrX 153629442 153629530 -8970400 - MIR3 SINE MIR -54 154 67 24 0 0 0 chrX 153630412 153630436 -8969494 + AT_rich Low_complexity Low_complexity 1 24 0 1651 216 68 33 chrX 153630887 153631369 -8968561 + MLT1D LTR MaLR 7 505 0 408 97 0 0 chrX 153631900 153631962 -8967968 + (CA)n Simple_repeat Simple_repeat 2 63 0 2075 99 0 11 chrX 153633121 153633436 -8966494 + AluSc SINE Alu 1 312 0 1728 190 94 8 chrX 153633570 153633933 -8965997 + MSTD LTR MaLR 1 394 -2 429 244 0 11 chrX 153634008 153634098 -8965832 + MIR SINE MIR 154 242 -20 201 229 16 16 chrX 153634771 153634832 -8965098 + (TAA)n Simple_repeat Simple_repeat 3 63 0 640 286 51 10 chrX 153634835 153635031 -8964899 - MIR SINE MIR -36 226 23 4371 138 11 4 chrX 153635752 153636470 -8963460 - L1MB2 LINE L1 -1 6170 5448 955 184 88 42 chrX 153636910 153637149 -8962781 + MIR SINE MIR 10 259 -3 221 313 139 42 chrX 153637955 153638121 -8961809 - MIR3 SINE MIR -14 194 13 814 185 26 48 chrX 153638519 153638708 -8961222 - MIR SINE MIR -10 252 68 386 358 30 0 chrX 153638787 153638952 -8960978 - MIR3 SINE MIR -14 194 25 215 311 156 0 chrX 153640056 153640146 -8959784 + MIR SINE MIR 43 146 -62 226 300 78 0 chrX 153640192 153640282 -8959648 - MIR SINE MIR -4 258 162 314 219 14 0 chrX 153640284 153640357 -8959573 + MER116 DNA Mariner 6 79 -1 343 231 13 0 chrX 153640363 153640441 -8959489 - MIR SINE MIR -118 144 66 307 312 32 48 chrX 153640436 153640561 -8959369 + MIR SINE MIR 140 262 0 * 1627 253 70 29 chrX 153640581 153641068 -8958862 - MER45C DNA AcHobo -2 951 445 1186 248 113 21 chrX 153641111 153641438 -8958492 - MER45C DNA AcHobo -596 357 1 199 367 60 13 chrX 153641441 153641591 -8958339 - L2 LINE L2 -26 3246 3090 580 252 61 8 chrX 153642989 153643120 -8956810 - MIR SINE MIR -55 153 16 2123 122 109 25 chrX 153643389 153643742 -8956188 + MSTA LTR MaLR 1 392 -36 2111 118 0 32 chrX 153643742 153644055 -8955875 - AluSx SINE Alu -9 303 1 2123 122 109 25 chrX 153644055 153644096 -8955834 + MSTA LTR MaLR 392 428 0 1210 238 80 21 chrX 153644333 153644719 -8955211 - MLT1I LTR MaLR 0 409 1 26 30 0 0 chrX 153644910 153644943 -8954987 + AT_rich Low_complexity Low_complexity 1 33 0 1503 225 3 9 chrX 153645041 153645356 -8954574 + Tigger7 DNA MER2_type 32 344 -2143 807 151 20 7 chrX 153645351 153645497 -8954433 + Tigger7 DNA MER2_type 2339 2486 -1 * 334 290 0 51 chrX 153646414 153646552 -8953378 - HAL1 LINE L1 -901 1606 1476 1593 276 50 17 chrX 153646619 153647141 -8952789 + MLT1E LTR MaLR 55 593 0 29 28 0 0 chrX 153647564 153647600 -8952330 + AT_rich Low_complexity Low_complexity 1 36 0 200 200 25 50 chrX 153647659 153647739 -8952191 + T-rich Low_complexity Low_complexity 2 79 0 1353 251 28 23 chrX 153648263 153648697 -8951233 - L1ME3A LINE L1 -32 6138 5703 1214 162 13 0 chrX 153648696 153648931 -8950999 - L1 LINE L1 -2542 3604 3367 * 3375 161 3 0 chrX 153648940 153649584 -8950346 + L1 LINE L1 4663 5308 -838 353 48 0 8 chrX 153649649 153649709 -8950221 + L1M LINE L1 5314 5370 -800 4717 160 20 33 chrX 153649732 153651475 -8948455 - L1PA15 LINE L1 -108 6057 4352 195 227 202 67 chrX 153652094 153652213 -8947717 + L2 LINE L2 3179 3313 0 2366 90 3 0 chrX 153653006 153653307 -8946623 - AluSp SINE Alu -11 302 1 894 262 81 26 chrX 153653707 153654054 -8945876 - MLT1J2 LTR MaLR -26 424 59 188 143 0 0 chrX 153655810 153655838 -8944092 + L2 LINE L2 1524 1551 -1763 315 0 0 0 chrX 153656050 153656085 -8943845 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 204 257 149 0 chrX 153656087 153656161 -8943769 - L2 LINE L2 -23 3290 3206 222 91 0 0 chrX 153656751 153656784 -8943146 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 235 362 106 0 chrX 153656784 153656878 -8943052 - L2 LINE L2 -13 3300 3197 5590 202 45 14 chrX 153656984 153658363 -8941567 + Charlie1a DNA MER1_type 1 1422 -33 244 341 55 11 chrX 153658459 153658550 -8941380 + L2 LINE L2 3162 3256 -16 304 296 10 0 chrX 153660393 153660491 -8939439 + L2 LINE L2 1475 1573 -1741 508 269 82 12 chrX 153660516 153660687 -8939243 + L2 LINE L2 3128 3310 -3 306 226 11 21 chrX 153660709 153660802 -8939128 + MER103 DNA DNA 6 97 -69 554 292 7 0 chrX 153660804 153660958 -8938972 - L2 LINE L2 -705 2609 2455 237 33 0 0 chrX 153660958 153660988 -8938942 + (TG)n Simple_repeat Simple_repeat 1 30 0 563 316 56 19 chrX 153661062 153661331 -8938599 - L2 LINE L2 -428 2886 2608 289 271 65 0 chrX 153661920 153662027 -8937903 - MIR3 SINE MIR -4 204 91 212 209 0 0 chrX 153662148 153662191 -8937739 + MIR SINE MIR 111 153 -55 299 136 17 0 chrX 153662956 153663015 -8936915 + CT-rich Low_complexity Low_complexity 2 61 0 316 243 117 9 chrX 153663883 153663994 -8935936 - MIR SINE MIR -99 163 41 480 305 94 55 chrX 153664281 153664642 -8935288 + L2 LINE L2 2921 3295 -18 1513 172 39 94 chrX 153664655 153664723 -8935207 - MLT1B LTR MaLR 0 390 320 2282 91 0 7 chrX 153664723 153665010 -8934920 + AluSx SINE Alu 1 285 -27 1513 172 39 94 chrX 153665010 153665022 -8934908 - MLT1B LTR MaLR -70 320 309 240 35 0 0 chrX 153665022 153665051 -8934879 + (TG)n Simple_repeat Simple_repeat 2 30 0 1513 172 39 94 chrX 153665051 153665352 -8934578 - MLT1B LTR MaLR -81 309 29 25 0 0 0 chrX 153666361 153666386 -8933544 + AT_rich Low_complexity Low_complexity 1 25 0 1336 227 79 23 chrX 153666845 153667398 -8932532 + MLT1E1 LTR MaLR 1 593 0 271 254 12 154 chrX 153668023 153668192 -8931738 + MER5B DNA MER1_type 2 146 -32 1757 207 58 39 chrX 153668508 153668992 -8930938 - LTR55 LTR ERV -16 532 40 199 256 12 98 chrX 153669012 153669094 -8930836 + L2 LINE L2 3192 3266 -47 414 280 25 25 chrX 153669457 153669614 -8930316 + MER5B DNA MER1_type 3 159 -19 1956 135 3 17 chrX 153670455 153670647 -8929283 + AluJb SINE Alu 1 189 -123 4656 120 5 0 chrX 153670647 153671279 -8928651 - MER41B LTR ERV1 0 635 1 1956 135 3 17 chrX 153671279 153671383 -8928547 + AluJb SINE Alu 189 293 -19 743 228 96 36 chrX 153671726 153671945 -8927985 + MIR SINE MIR 3 234 -28 243 188 0 0 chrX 153674098 153674146 -8925784 + (CA)n Simple_repeat Simple_repeat 2 49 0 246 62 0 0 chrX 153674849 153674881 -8925049 + (GA)n Simple_repeat Simple_repeat 1 32 0 270 56 0 0 chrX 153676405 153676441 -8923489 + (TG)n Simple_repeat Simple_repeat 2 37 0 210 136 0 0 chrX 153677131 153677175 -8922755 + (TG)n Simple_repeat Simple_repeat 2 45 0 1066 196 29 24 chrX 153677222 153677431 -8922499 - MER63A DNA MER1_type 0 210 1 211 0 0 81 chrX 153678216 153678253 -8921677 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 195 42 0 0 chrX 153678565 153678589 -8921341 + (CAA)n Simple_repeat Simple_repeat 2 25 0 258 79 0 0 chrX 153682640 153682678 -8917252 - L2 LINE L2 0 3313 3276 431 299 35 7 chrX 153684726 153684870 -8915060 + MIR SINE MIR 2 149 -113 331 327 14 77 chrX 153685126 153685334 -8914596 - MIR SINE MIR -48 214 20 1052 157 0 0 chrX 153688270 153688436 -8911494 + FRAM SINE Alu 1 40 0 2154 110 19 10 chrX 153688446 153688755 -8911175 + AluSx SINE Alu 1 312 0 508 306 38 6 chrX 153688776 153688936 -8910994 + MIR3 SINE MIR 17 181 -27 590 269 137 77 chrX 153689411 153689880 -8910050 + L2 LINE L2 2817 3313 0 284 204 0 0 chrX 153689986 153690040 -8909890 + L2 LINE L2 3254 3307 -6 284 352 107 9 chrX 153690240 153690456 -8909474 - MIR SINE MIR -6 256 20 1702 173 65 3 chrX 153690613 153690949 -8908981 + MER58D DNA MER1_type 30 386 0 256 328 219 0 chrX 153691243 153691435 -8908495 + L2 LINE L2 3037 3270 -2 231 200 243 0 chrX 153692134 153692204 -8907726 - MIR SINE MIR -127 135 49 250 369 35 0 chrX 153692230 153692371 -8907559 - MIR3 SINE MIR -33 175 30 897 193 17 6 chrX 153694093 153694274 -8905656 + MER5A DNA MER1_type 1 183 -6 345 24 0 0 chrX 153696085 153696127 -8903803 + (TG)n Simple_repeat Simple_repeat 2 43 0 1178 146 11 0 chrX 153697380 153697565 -8902365 + L1MD2 LINE L1 6163 6349 -10 2858 3 0 0 chrX 153697777 153698080 -8901850 - AluYa5 SINE Alu -8 303 1 576 280 120 64 chrX 153698119 153698634 -8901296 - L1ME4a LINE L1 -56 6065 5522 204 97 0 0 chrX 153699452 153699483 -8900447 + (TTC)n Simple_repeat Simple_repeat 3 33 0 1048 192 51 33 chrX 153700331 153700545 -8899385 + MER20 DNA MER1_type 2 219 0 8165 13 1 0 chrX 153700573 153701970 -8897960 + L1HS LINE L1 4757 6155 0 231 88 0 0 chrX 153701972 153702006 -8897924 + (A)n Simple_repeat Simple_repeat 1 34 0 239 303 110 9 chrX 153703715 153703824 -8896106 - MIR3 SINE MIR -25 183 64 210 261 31 31 chrX 153703814 153703879 -8896051 + MIR3 SINE MIR 93 157 -51 * 904 158 42 70 chrX 153703936 153703999 -8895931 - MER106A DNA MER1_type -1 235 172 2249 137 27 0 chrX 153703999 153704334 -8895596 - MER2 DNA MER2_type 0 344 1 904 158 42 70 chrX 153704334 153704511 -8895419 - MER106A DNA MER1_type -64 172 2 714 174 118 12 chrX 153705255 153705416 -8894514 - MER5B DNA MER1_type 0 178 1 267 256 0 0 chrX 153706766 153706856 -8893074 + (TGG)n Simple_repeat Simple_repeat 3 92 0 283 250 0 34 chrX 153707246 153707334 -8892596 + GA-rich Low_complexity Low_complexity 1 85 0 187 374 119 22 chrX 153708394 153708798 -8891132 + L2 LINE L2 2458 2900 -414 2305 143 60 3 chrX 153708923 153709309 -8890621 - L1MB2 LINE L1 0 6171 5764 183 309 92 122 chrX 153709313 153709617 -8890313 + L2 LINE L2 2978 3272 0 395 272 123 0 chrX 153710200 153710314 -8889616 - MIR3 SINE MIR -24 184 57 341 239 0 0 chrX 153711149 153711241 -8888689 + (TA)n Simple_repeat Simple_repeat 2 93 0 504 266 89 52 chrX 153713340 153713684 -8886246 + LTR18B LTR ERVL 1 614 0 1364 159 4 21 chrX 153715996 153716235 -8883695 - MER46A DNA MER2_type -1 235 1 183 162 0 0 chrX 153718238 153718275 -8881655 + (CA)n Simple_repeat Simple_repeat 1 37 0 755 288 20 32 chrX 153719008 153719258 -8880672 + MIR SINE MIR 16 262 0 309 26 0 0 chrX 153719895 153719933 -8879997 + (TG)n Simple_repeat Simple_repeat 2 39 0 261 194 32 16 chrX 153720262 153720324 -8879606 - MIR SINE MIR -110 152 90 305 294 84 17 chrX 153720626 153720745 -8879185 - MIR3 SINE MIR -52 156 30 315 71 0 0 chrX 153722533 153722575 -8877355 + (TG)n Simple_repeat Simple_repeat 2 43 0 926 238 76 20 chrX 153722590 153722893 -8877037 - MER46C DNA MER2_type -14 324 5 481 311 62 62 chrX 153724564 153724918 -8875012 + L3 LINE CR1 1188 1541 -36 2167 81 67 26 chrX 153724919 153725264 -8874666 + MER83B LTR ERV1 1 359 -19 2157 224 97 9 chrX 153726741 153727298 -8872632 + MLT1E2 LTR MaLR 21 626 0 506 302 69 5 chrX 153727855 153728044 -8871886 + MIR SINE MIR 7 207 -55 462 242 201 7 chrX 153728059 153728208 -8871722 - MER5A DNA MER1_type -3 186 9 415 311 0 23 chrX 153728681 153728813 -8871117 - MIR SINE MIR -21 241 113 2267 120 0 3 chrX 153730883 153731192 -8868738 - AluSg SINE Alu -2 308 1 224 371 73 40 chrX 153731465 153731713 -8868217 + L2 LINE L2 2924 3179 -93 189 147 0 0 chrX 153733886 153733920 -8866010 + (TATG)n Simple_repeat Simple_repeat 1 34 0 236 151 0 19 chrX 153734606 153734659 -8865271 + CT-rich Low_complexity Low_complexity 3 54 0 225 0 0 0 chrX 153738319 153738344 -8861586 + (TG)n Simple_repeat Simple_repeat 2 26 0 185 167 0 0 chrX 153738640 153738670 -8861260 - MIR SINE MIR -164 98 69 264 59 0 0 chrX 153738908 153738942 -8860988 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 542 259 29 35 chrX 153738942 153739106 -8860824 - MIR SINE MIR -10 252 88 200 339 0 0 chrX 153739300 153739362 -8860568 - MIR3 SINE MIR 0 208 147 191 256 128 35 chrX 153739677 153739763 -8860167 - MER5B DNA MER1_type -84 94 1 22 0 0 0 chrX 153739943 153739965 -8859965 + AT_rich Low_complexity Low_complexity 1 22 0 1906 277 27 26 chrX 153740019 153740928 -8859002 + L2 LINE L2 2405 3313 0 306 294 18 18 chrX 153741225 153741334 -8858596 - MIR SINE MIR -135 127 19 313 358 54 0 chrX 153741602 153741750 -8858180 - MIR3 SINE MIR -21 187 32 2446 81 0 3 chrX 153742462 153742772 -8857158 - AluSx SINE Alu -3 309 1 255 204 0 0 chrX 153744837 153744886 -8855044 + MIR SINE MIR 101 149 -113 272 354 8 8 chrX 153746251 153746378 -8853552 + GA-rich Low_complexity Low_complexity 2 128 0 526 280 120 25 chrX 153747667 153747867 -8852063 - MIR SINE MIR -11 251 33 819 258 12 35 chrX 153747916 153748157 -8851773 - MIR SINE MIR -6 256 21 187 254 63 32 chrX 153748356 153748419 -8851511 - L2 LINE L2 0 3313 3249 1681 153 49 6 chrX 153752170 153752497 -8847433 + L1MB8 LINE L1 5836 6176 -2 314 199 149 35 chrX 153752939 153753080 -8846850 - MER103 DNA DNA -2 164 8 336 83 0 0 chrX 153753093 153753141 -8846789 + (CA)n Simple_repeat Simple_repeat 2 49 0 38 22 0 0 chrX 153754175 153754220 -8845710 + AT_rich Low_complexity Low_complexity 1 45 0 243 0 0 0 chrX 153755841 153755868 -8844062 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 516 303 59 35 chrX 153756804 153757058 -8842872 - L2 LINE L2 0 3313 3054 2579 45 0 3 chrX 153757235 153757544 -8842386 + AluY SINE Alu 1 308 -3 237 306 165 36 chrX 153759478 153759811 -8840119 + L2 LINE L2 2897 3272 0 297 200 0 0 chrX 153761035 153761100 -8838830 + L1 LINE L1 4789 4853 -1293 1463 130 30 26 chrX 153761102 153761371 -8838559 - L1PA15 LINE L1 -1 6164 5895 1420 98 5 5 chrX 153761371 153761566 -8838364 + L1PA8A LINE L1 5911 6113 -18 2670 133 2 0 chrX 153761584 153761999 -8837931 - L1PA15 LINE L1 -253 5912 5497 268 250 107 18 chrX 153762107 153762219 -8837711 + MER103 DNA DNA 8 129 -37 222 91 0 0 chrX 153762614 153762647 -8837283 + (CA)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chrX 153762647 153762671 -8837259 + AT_rich Low_complexity Low_complexity 1 24 0 240 378 0 0 chrX 153762793 153762875 -8837055 - MIR SINE MIR -82 126 45 414 368 23 0 chrX 153763300 153763433 -8836497 + L2 LINE L2 3137 3272 0 231 88 0 0 chrX 153763655 153763689 -8836241 + (TC)n Simple_repeat Simple_repeat 2 35 0 188 267 22 0 chrX 153764051 153764096 -8835834 - MER5B DNA MER1_type -49 129 84 1387 135 29 8 chrX 153764735 153764980 -8834950 - MER58B DNA MER1_type 0 341 92 7237 89 5 19 chrX 153765252 153766324 -8833606 + MER11C LTR ERVK 1 1057 -14 5407 89 34 11 chrX 153766587 153767349 -8832581 - LTR17 LTR ERV1 0 780 1 957 89 7 7 chrX 153767351 153767486 -8832444 - HERV17 LTR ERV1 -3 8623 8489 422 182 113 63 chrX 153772503 153772672 -8827258 + MIR3 SINE MIR 11 181 -62 203 170 21 0 chrX 153772971 153773018 -8826912 + CT-rich Low_complexity Low_complexity 2 49 0 180 111 0 0 chrX 153773480 153773507 -8826423 + (GAAA)n Simple_repeat Simple_repeat 4 30 0 21 0 0 0 chrX 153773775 153773796 -8826134 + AT_rich Low_complexity Low_complexity 1 21 0 202 328 45 0 chrX 153774899 153774966 -8824964 + L2 LINE L2 3244 3313 0 187 365 74 29 chrX 153775230 153775474 -8824456 + L2 LINE L2 2554 2808 -506 296 330 11 0 chrX 153776265 153776359 -8823571 + MIR3 SINE MIR 108 202 -6 746 98 0 8 chrX 153776398 153776521 -8823409 + (TA)n Simple_repeat Simple_repeat 1 122 0 194 91 30 0 chrX 153778109 153778142 -8821788 + CT-rich Low_complexity Low_complexity 3 36 0 234 81 0 0 chrX 153778144 153778181 -8821749 + (CA)n Simple_repeat Simple_repeat 2 38 0 816 224 57 0 chrX 153778488 153778698 -8821232 + L1PBa LINE L1 330 551 -6312 1353 148 0 49 chrX 153778758 153779042 -8820888 - L1MA4A LINE L1 -447 5856 5587 181 290 0 43 chrX 153781122 153781191 -8818739 - MER5A DNA MER1_type -4 185 120 493 289 14 66 chrX 153783351 153783562 -8816368 - MIR SINE MIR -45 217 18 574 265 109 52 chrX 153783794 153784024 -8815906 - MIR SINE MIR -19 243 1 21 0 0 0 chrX 153784296 153784317 -8815613 + AT_rich Low_complexity Low_complexity 1 21 0 214 261 109 33 chrX 153784950 153785042 -8814888 + MIR SINE MIR 157 255 -7 2801 169 60 0 chrX 153785152 153785714 -8814216 + L1MB5 LINE L1 5579 6174 0 23 0 0 0 chrX 153788689 153788712 -8811218 + AT_rich Low_complexity Low_complexity 1 23 0 196 369 92 46 chrX 153788751 153789079 -8810851 + L2 LINE L2 2874 3216 -56 351 312 9 9 chrX 153789085 153789194 -8810736 - MIR3 SINE MIR -43 165 57 252 0 0 0 chrX 153789732 153789760 -8810170 + (TG)n Simple_repeat Simple_repeat 2 29 0 456 333 14 0 chrX 153789899 153790046 -8809884 - MIR SINE MIR -73 189 41 263 293 63 46 chrX 153790155 153790329 -8809601 + MIR SINE MIR 34 210 -52 320 298 91 35 chrX 153791720 153791918 -8808012 + MIR SINE MIR 8 216 -46 277 229 86 14 chrX 153792540 153792610 -8807320 - MER91A DNA MER1_type 0 196 122 333 237 169 81 chrX 153792694 153792930 -8807000 - L3 LINE CR1 -21 1556 1300 1233 217 54 30 chrX 153793875 153794207 -8805723 + MER58B DNA MER1_type 2 341 0 373 224 0 24 chrX 153794426 153794511 -8805419 + MIR SINE MIR 87 169 -93 495 312 35 23 chrX 153795261 153795434 -8804496 - L2 LINE L2 -639 2675 2501 2680 204 21 33 chrX 153796459 153797028 -8802902 - REP3 LTR ERV 0 562 1 193 245 160 21 chrX 153797397 153797491 -8802439 + MIR SINE MIR 16 122 -86 284 272 8 8 chrX 153797928 153798053 -8801877 + L1MB7 LINE L1 3865 3989 -2157 431 311 93 26 chrX 153799191 153799384 -8800546 + MIR SINE MIR 6 211 -51 359 272 34 48 chrX 153800008 153800155 -8799775 - MIR SINE MIR 0 262 118 508 222 0 7 chrX 153800156 153800291 -8799639 + L1MB7 LINE L1 5186 5319 -827 491 104 0 104 chrX 153800719 153800762 -8799168 + L1MB7 LINE L1 5324 5370 -814 1256 164 116 65 chrX 153800762 153801116 -8798814 + MLT1A2 LTR MaLR 3 374 0 491 104 0 104 chrX 153801116 153801178 -8798752 + L1MB7 LINE L1 5370 5418 -766 2289 166 26 4 chrX 153801178 153801633 -8798297 + L1MB7 LINE L1 5718 6184 0 242 263 10 81 chrX 153801635 153801734 -8798196 - MIR SINE MIR -170 92 1 1437 190 61 71 chrX 153803693 153804087 -8795843 + MLT1B LTR MaLR 1 390 0 1352 198 9 30 chrX 153804367 153804700 -8795230 - L1MB7 LINE L1 -41 6143 5818 1411 170 15 114 chrX 153804718 153805123 -8794807 + MLT1A1 LTR MaLR 1 365 0 354 266 87 48 chrX 153806317 153806713 -8793217 + LTR16A1 LTR ERVL 1 445 -12 190 250 133 17 chrX 153806804 153806864 -8793066 + MIR3 SINE MIR 119 185 -23 21 0 0 0 chrX 153807471 153807492 -8792438 + AT_rich Low_complexity Low_complexity 1 21 0 585 256 24 12 chrX 153812133 153812297 -8787633 - MER103 DNA DNA 0 166 1 1104 57 0 0 chrX 153813777 153813918 -8786012 + L1PA6 LINE L1 6012 6152 -2 209 264 28 14 chrX 153813932 153814004 -8785926 + MIR SINE MIR 180 252 -10 51 31 0 0 chrX 153814004 153814069 -8785861 + AT_rich Low_complexity Low_complexity 1 65 0 1017 106 0 0 chrX 153814360 153814511 -8785419 - L1PA13 LINE L1 -5 6158 6008 298 295 110 42 chrX 153814525 153814925 -8785005 - L1M4 LINE L1 -1175 4971 4545 489 313 84 26 chrX 153817238 153817467 -8782463 + MIR SINE MIR 3 241 -21 891 220 110 5 chrX 153817826 153818044 -8781886 - MIR SINE MIR -2 260 20 275 301 81 41 chrX 153820061 153820184 -8779746 + MIR SINE MIR 16 143 -65 254 330 18 28 chrX 153820267 153820376 -8779554 - MIR SINE MIR -104 158 51 407 321 8 4 chrX 153820664 153820816 -8779114 + MIR SINE MIR 28 145 -63 284 294 73 0 chrX 153820990 153821099 -8778831 + MIR SINE MIR 140 256 -6 4740 89 39 17 chrX 153821297 153821995 -8777935 + L1PA14 LINE L1 5449 6161 0 339 305 9 0 chrX 153822871 153822976 -8776954 + MIR SINE MIR 25 130 -78 511 250 179 19 chrX 153823910 153824122 -8775808 + MIR SINE MIR 12 257 -5 326 303 71 32 chrX 153824124 153824279 -8775651 + L2 LINE L2 3112 3272 0 202 288 17 0 chrX 153824322 153824381 -8775549 + GA-rich Low_complexity Low_complexity 2 61 0 197 280 20 0 chrX 153825788 153825838 -8774092 + L2 LINE L2 3132 3182 -90 206 302 167 8 chrX 153825845 153825971 -8773959 + MIR SINE MIR 117 262 0 1155 108 0 0 chrX 153826679 153826845 -8773085 + AluY SINE Alu 145 310 -1 357 62 0 0 chrX 153828579 153828627 -8771303 + (TG)n Simple_repeat Simple_repeat 1 48 0 1706 216 25 8 chrX 153829775 153830132 -8769798 + MLT1A1 LTR MaLR 3 365 0 660 152 32 0 chrX 153830480 153830611 -8769319 + L1MA3 LINE L1 5814 5954 -247 305 100 33 0 chrX 153832814 153832874 -8767056 - L1MA1 LINE L1 0 6302 6241 1178 219 11 26 chrX 153833236 153833505 -8766425 - MER58B DNA MER1_type 0 341 77 305 287 82 25 chrX 153833735 153833790 -8766140 - MIR3 SINE MIR -3 205 155 429 20 0 0 chrX 153833790 153833840 -8766090 + (CA)n Simple_repeat Simple_repeat 2 51 0 305 287 82 25 chrX 153833840 153833962 -8765968 - MIR3 SINE MIR -53 155 20 708 297 52 4 chrX 153834153 153834382 -8765548 + MIR SINE MIR 23 262 0 204 135 0 0 chrX 153835384 153835421 -8764509 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chrX 153835844 153835865 -8764065 + AT_rich Low_complexity Low_complexity 1 21 0 927 293 81 56 chrX 153836224 153836705 -8763225 - L3 LINE CR1 -101 1476 984 1408 127 38 51 chrX 153837778 153837955 -8761975 + L1MA7 LINE L1 5998 6171 -120 2298 90 21 0 chrX 153837955 153838244 -8761686 + AluSc SINE Alu 3 297 -12 1408 127 38 51 chrX 153838244 153838358 -8761572 + L1MA7 LINE L1 6171 6285 -6 348 24 0 0 chrX 153839176 153839217 -8760713 + (CA)n Simple_repeat Simple_repeat 2 42 0 427 186 77 0 chrX 153839964 153840062 -8759868 - MIR3 SINE MIR -51 157 62 2225 94 0 13 chrX 153840093 153840392 -8759538 - AluSg SINE Alu -3 307 13 189 121 0 0 chrX 153840592 153840625 -8759305 + (TG)n Simple_repeat Simple_repeat 2 34 0 386 339 24 36 chrX 153840834 153841002 -8758928 + MIR3 SINE MIR 18 183 -25 281 68 23 0 chrX 153841502 153841546 -8758384 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 204 40 0 0 chrX 153841788 153841813 -8758117 + (TG)n Simple_repeat Simple_repeat 2 26 0 6683 110 16 35 chrX 153842200 153843291 -8756639 + MER11C LTR ERVK 1 1071 0 735 342 53 17 chrX 153843598 153843955 -8755975 + L3 LINE CR1 1083 1452 -125 252 192 0 19 chrX 153845872 153845924 -8754006 - L2 LINE L2 -1 3312 3262 188 156 67 44 chrX 153847890 153847935 -8751995 - L2 LINE L2 -2816 498 453 212 325 207 18 chrX 153848531 153848700 -8751230 - MIR SINE MIR -54 208 8 249 33 0 0 chrX 153848818 153848848 -8751082 + (TG)n Simple_repeat Simple_repeat 1 30 0 1545 158 10 47 chrX 153848849 153849147 -8750783 - AluJo SINE Alu -25 287 1 1146 158 124 41 chrX 153849321 153849587 -8750343 - L1MA9 LINE L1 -1 6311 6024 303 71 0 0 chrX 153849798 153849840 -8750090 + (GA)n Simple_repeat Simple_repeat 2 43 0 724 212 71 20 chrX 153850332 153850530 -8749400 + MER3 DNA MER1_type 1 208 -1 430 288 0 8 chrX 153850540 153850658 -8749272 - MIR SINE MIR -65 143 27 315 0 0 0 chrX 153851161 153851196 -8748734 + (CA)n Simple_repeat Simple_repeat 1 35 0 788 233 32 11 chrX 153851453 153851642 -8748288 + 7SK RNA RNA 1 193 0 207 239 225 0 chrX 153852520 153852591 -8747339 - L3 LINE CR1 -110 1467 1381 383 304 184 6 chrX 153852613 153852771 -8747159 - MIR SINE MIR -17 245 60 297 363 78 46 chrX 153852804 153853085 -8746845 - L3 LINE CR1 -193 1384 1095 307 129 32 0 chrX 153853085 153853147 -8746783 - L1PA16 LINE L1 -6 6160 6097 391 288 54 18 chrX 153853298 153853520 -8746410 - L1ME4a LINE L1 -203 5918 5689 940 241 50 11 chrX 153853618 153854691 -8745239 + L1ME LINE L1 4493 5729 -437 616 319 29 0 chrX 153854691 153854901 -8745029 + MIR SINE MIR 47 262 0 317 309 79 28 chrX 153855061 153855239 -8744691 + L2 LINE L2 1177 1363 -1951 22 0 0 0 chrX 153855282 153855304 -8744626 + AT_rich Low_complexity Low_complexity 1 22 0 240 195 110 0 chrX 153855316 153855398 -8744532 - L1 LINE L1 -1102 5044 4954 940 312 65 39 chrX 153855550 153856655 -8743275 - L1 LINE L1 -1757 4389 3256 22 0 0 0 chrX 153859096 153859118 -8740812 + AT_rich Low_complexity Low_complexity 1 22 0 386 276 90 21 chrX 153860245 153860390 -8739540 + MIR SINE MIR 84 238 -24 210 306 48 57 chrX 153860631 153860755 -8739175 + MIR3 SINE MIR 6 128 -80 689 114 6 127 chrX 153862573 153862731 -8737199 - MER1B DNA MER1_type -1 338 200 476 238 54 48 chrX 153863175 153863343 -8736587 - MIR SINE MIR -92 170 2 209 336 30 8 chrX 153864231 153864362 -8735568 + MIR3 SINE MIR 60 193 -15 402 246 18 27 chrX 153865273 153865383 -8734547 - MER94 DNA DNA -24 110 2 412 232 56 40 chrX 153865522 153865647 -8734283 - L2 LINE L2 0 3272 3146 273 216 0 40 chrX 153865748 153865822 -8734108 - MER103 DNA DNA -1 165 95 180 77 0 0 chrX 153865907 153865933 -8733997 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 294 266 59 108 chrX 153866335 153866538 -8733392 + MIR SINE MIR 20 212 -50 389 325 23 29 chrX 153869545 153869785 -8730145 + MIR3 SINE MIR 8 245 -17 297 323 0 32 chrX 153871206 153871330 -8728600 + MIR3 SINE MIR 41 160 -48 1598 269 97 46 chrX 153871846 153872581 -8727349 - L2 LINE L2 -1274 2040 1269 198 351 43 0 chrX 153875421 153875515 -8724415 - L2 LINE L2 -13 3300 3203 1553 153 62 115 chrX 153875515 153875933 -8723997 + MSTD LTR MaLR 1 396 0 277 233 209 35 chrX 153876572 153876658 -8723272 + MIR3 SINE MIR 72 172 -36 369 0 0 0 chrX 153878027 153878068 -8721862 + (TA)n Simple_repeat Simple_repeat 2 42 0 2219 110 7 3 chrX 153878070 153878380 -8721550 - AluY SINE Alu 0 311 1 300 342 25 56 chrX 153878841 153879037 -8720893 - MIR SINE MIR -71 191 2 444 262 6 98 chrX 153880043 153880207 -8719723 - MIR3 SINE MIR -30 178 30 1310 93 0 6 chrX 153881434 153881606 -8718324 - AluSg/x SINE Alu -17 295 125 634 290 98 13 chrX 153881627 153881851 -8718079 - MIR SINE MIR -11 251 9 2635 99 6 3 chrX 153882380 153882743 -8717187 + THE1B LTR MaLR 1 364 0 5360 71 3 14 chrX 153883042 153883761 -8716169 - L1PA10 LINE L1 -4 6164 5454 287 280 64 16 chrX 153884334 153884459 -8715471 + MIR3 SINE MIR 75 205 -3 240 35 0 0 chrX 153886559 153886588 -8713342 + (CA)n Simple_repeat Simple_repeat 2 30 0 252 249 243 17 chrX 153886841 153887018 -8712912 - MIR SINE MIR 0 262 46 1762 172 10 65 chrX 153887138 153887551 -8712379 + MLT1B LTR MaLR 1 390 0 496 265 8 0 chrX 153887795 153887912 -8712018 - MIR SINE MIR -11 251 134 25 0 0 0 chrX 153891257 153891282 -8708648 + AT_rich Low_complexity Low_complexity 1 25 0 193 302 12 93 chrX 153891551 153891637 -8708293 + MIR3 SINE MIR 15 93 -115 309 140 21 118 chrX 153891637 153891730 -8708200 + MLT1D LTR MaLR 1 84 -421 19899 100 22 19 chrX 153891758 153898037 -8701893 + L1PA7 LINE L1 8 6469 0 953 232 99 68 chrX 153898037 153898420 -8701510 + MLT1D LTR MaLR 106 500 -5 226 248 120 24 chrX 153898422 153898547 -8701383 + MIR SINE MIR 105 241 -21 201 143 0 29 chrX 153899387 153899422 -8700508 + (GGGAGA)n Simple_repeat Simple_repeat 4 37 0 965 125 12 0 chrX 153900125 153900285 -8699645 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 188 139 0 23 chrX 153900793 153900836 -8699094 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 897 103 140 6 chrX 153900836 153901002 -8698928 - L1PA8A LINE L1 -2 6129 5941 324 120 0 0 chrX 153901343 153901393 -8698537 + (A)n Simple_repeat Simple_repeat 1 50 0 358 278 10 0 chrX 153902609 153902706 -8697224 - MER68 LTR ERV1 -8 554 457 1254 206 42 11 chrX 153902790 153903077 -8696853 - MER68 LTR ERV1 -265 297 2 300 284 15 0 chrX 153903817 153903884 -8696046 + L2 LINE L2 3204 3271 -1 222 283 172 0 chrX 153904837 153904936 -8694994 + MIR SINE MIR 77 192 -70 198 118 0 0 chrX 153905322 153905356 -8694574 + (TG)n Simple_repeat Simple_repeat 1 34 0 194 293 121 69 chrX 153905700 153905874 -8694056 - L2 LINE L2 -168 3104 2922 198 317 20 89 chrX 153907110 153907177 -8692753 - L3b LINE CR1 -66 1517 1456 7677 22 0 0 chrX 153907177 153908224 -8691706 + L1PA3 LINE L1 5136 6182 0 198 317 20 89 chrX 153908224 153908255 -8691675 - L3b LINE CR1 -127 1456 1424 255 286 0 0 chrX 153908643 153908713 -8691217 + A-rich Low_complexity Low_complexity 3 72 0 788 120 0 45 chrX 153908715 153908848 -8691082 + FLAM_C SINE Alu 1 127 -6 620 106 29 0 chrX 153910292 153910396 -8689534 - L1MA8 LINE L1 -108 6183 6077 479 167 0 0 chrX 153911309 153911399 -8688531 + L1PB1 LINE L1 5703 5792 -359 225 154 0 0 chrX 153911399 153911438 -8688492 + (CA)n Simple_repeat Simple_repeat 2 40 0 2912 52 5 3 chrX 153911474 153911842 -8688088 + L1PB1 LINE L1 5776 6144 -7 363 209 0 0 chrX 153911878 153911983 -8687947 + (TA)n Simple_repeat Simple_repeat 1 105 0 222 219 202 44 chrX 153912094 153912208 -8687722 - L2 LINE L2 -2 3311 3180 * 465 291 0 0 chrX 153912194 153912304 -8687626 + L2 LINE L2 3204 3313 0 183 42 0 0 chrX 153912418 153912442 -8687488 + (A)n Simple_repeat Simple_repeat 1 24 0 207 288 50 0 chrX 153912766 153912846 -8687084 - MIR SINE MIR -67 195 112 25 31 0 0 chrX 153913789 153913821 -8686109 + AT_rich Low_complexity Low_complexity 1 32 0 1306 128 0 5 chrX 153914827 153915015 -8684915 + AluSq SINE Alu 1 187 -126 826 239 149 27 chrX 153915016 153915493 -8684437 + L1ME4a LINE L1 5573 6107 -14 279 257 0 14 chrX 153916457 153916527 -8683403 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 811 238 17 0 chrX 153916561 153916733 -8683197 - MER58A DNA MER1_type -5 219 45 21 0 0 0 chrX 153917213 153917234 -8682696 + AT_rich Low_complexity Low_complexity 1 21 0 655 297 46 14 chrX 153917663 153917882 -8682048 - MIR SINE MIR -35 227 2 377 109 16 0 chrX 153918137 153918201 -8681729 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1541 214 23 27 chrX 153921712 153922077 -8677853 + MLT1A1 LTR MaLR 1 454 -3 350 252 29 162 chrX 153923061 153923271 -8676659 - MIR SINE MIR 0 262 81 2232 87 3 7 chrX 153923632 153923953 -8675977 + AluSq SINE Alu 1 320 0 298 235 62 0 chrX 153924085 153924166 -8675764 + MIR SINE MIR 100 185 -77 1002 176 0 18 chrX 153924464 153924634 -8675296 + FRAM SINE Alu 1 166 -10 362 290 21 0 chrX 153926538 153926631 -8673299 - L2 LINE L2 -1 3271 3177 257 303 79 0 chrX 153926662 153926751 -8673179 - L2 LINE L2 -185 3087 2992 204 40 0 0 chrX 153927231 153927256 -8672674 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 2064 114 0 0 chrX 153927858 153928138 -8671792 + AluSx SINE Alu 1 280 -32 219 88 0 0 chrX 153928138 153928172 -8671758 + (TAA)n Simple_repeat Simple_repeat 1 34 0 281 279 116 27 chrX 153928620 153928767 -8671163 - MIR3 SINE MIR -17 191 32 290 304 136 11 chrX 153929304 153929495 -8670435 + L1ME4a LINE L1 5816 6030 -91 22 70 0 0 chrX 153929546 153929589 -8670341 + AT_rich Low_complexity Low_complexity 1 43 0 335 291 94 31 chrX 153929620 153929747 -8670183 + MIR SINE MIR 58 192 -70 14577 191 13 8 chrX 153931735 153938279 -8661651 + L1PB1 LINE L1 6 6866 -1 180 0 0 0 chrX 153938535 153938555 -8661375 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 284 307 71 31 chrX 153938927 153939054 -8660876 + MIR3 SINE MIR 58 189 -19 347 326 107 31 chrX 153939407 153939603 -8660327 + MIR SINE MIR 42 252 -10 261 57 0 0 chrX 153940467 153940502 -8659428 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 33 0 0 0 chrX 153940804 153940837 -8659093 + AT_rich Low_complexity Low_complexity 1 33 0 191 262 48 60 chrX 153941187 153941271 -8658659 - MIR SINE MIR -96 166 84 7941 10 0 0 chrX 153941312 153942301 -8657629 - L1PA2 LINE L1 0 6155 5168 307 256 12 99 chrX 153943915 153944046 -8655884 - MIR SINE MIR -66 142 66 255 238 32 103 chrX 153944198 153944324 -8655606 + L2 LINE L2 2578 2694 -620 222 402 73 12 chrX 153946174 153946338 -8653592 + MIR SINE MIR 11 184 -78 21 36 0 0 chrX 153946682 153946710 -8653220 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 153946825 153946861 -8653069 + AT_rich Low_complexity Low_complexity 1 36 0 2058 185 54 7 chrX 153946930 153947356 -8652574 + HERVL68 LTR ERVL 2573 3018 -19 1406 278 48 20 chrX 153947370 153947917 -8652013 + MER68 LTR ERV1 1 562 0 528 328 46 10 chrX 153949214 153949409 -8650521 + MIR SINE MIR 49 250 -12 297 75 0 0 chrX 153949966 153950006 -8649924 + (A)n Simple_repeat Simple_repeat 1 40 0 306 311 78 56 chrX 153950917 153951379 -8648551 - L2 LINE L2 -195 3077 2571 183 42 0 0 chrX 153951655 153951679 -8648251 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1437 210 87 45 chrX 153951799 153952247 -8647683 + MLT1C LTR MaLR 1 467 0 586 246 108 6 chrX 153952464 153952631 -8647299 - MIR SINE MIR -71 191 8 333 151 35 12 chrX 153953509 153953595 -8646335 + GA-rich Low_complexity Low_complexity 2 89 0 223 227 0 0 chrX 153954014 153954058 -8645872 - L2 LINE L2 -16 3256 3213 207 303 45 0 chrX 153954240 153954306 -8645624 - MIR SINE MIR -74 188 120 317 296 24 48 chrX 153955047 153955172 -8644758 - L2 LINE L2 0 3272 3151 26 0 0 0 chrX 153955185 153955211 -8644719 + AT_rich Low_complexity Low_complexity 1 26 0 436 342 22 36 chrX 153955282 153955507 -8644423 - MIR SINE MIR -21 241 20 328 296 56 7 chrX 153956098 153956240 -8643690 + L2 LINE L2 2832 2980 -333 2505 216 22 15 chrX 153956313 153956914 -8643016 - L1MB5 LINE L1 0 6174 5570 619 249 11 37 chrX 153956916 153957105 -8642825 + L2 LINE L2 3117 3300 -13 237 264 0 14 chrX 153957583 153957665 -8642265 + L1MB4 LINE L1 5696 5774 -539 229 271 35 0 chrX 153957775 153957860 -8642070 + (TA)n Simple_repeat Simple_repeat 1 88 0 386 253 0 130 chrX 153959050 153959100 -8640830 - L2 LINE L2 0 3313 3258 229 114 0 0 chrX 153959100 153959135 -8640795 + MLT2C2 LTR ERVL 1 35 -429 386 253 0 130 chrX 153959135 153959212 -8640718 - L2 LINE L2 -55 3258 3173 1261 233 97 68 chrX 153960573 153961168 -8638762 + L2 LINE L2 2722 3313 0 768 171 6 32 chrX 153963263 153963421 -8636509 + L1MB4 LINE L1 6027 6180 0 227 321 3 10 chrX 153963731 153963841 -8636089 + MIR SINE MIR 42 151 -57 221 312 70 51 chrX 153964047 153964204 -8635726 - MIR3 SINE MIR -43 165 6 376 250 60 17 chrX 153964307 153964423 -8635507 - MIR SINE MIR -10 252 132 221 290 113 0 chrX 153964480 153964542 -8635388 - L2 LINE L2 0 3313 3245 975 96 0 0 chrX 153965153 153965311 -8634619 - AluSg/x SINE Alu 0 316 159 363 360 19 12 chrX 153966197 153966358 -8633572 + MIR SINE MIR 84 245 -17 23 0 0 0 chrX 153966397 153966420 -8633510 + AT_rich Low_complexity Low_complexity 1 23 0 279 332 167 53 chrX 153967970 153968539 -8631391 - L3 LINE CR1 -1 1576 943 231 325 24 12 chrX 153968634 153968717 -8631213 - L2 LINE L2 -5 3267 3184 788 162 0 15 chrX 153968934 153969070 -8630860 + AluJ SINE Alu 1 134 -178 2244 107 0 0 chrX 153969074 153969364 -8630566 + AluSx SINE Alu 1 290 -22 304 286 44 0 chrX 153969383 153969474 -8630456 - L1MC4 LINE L1 -1337 6705 6611 999 139 0 0 chrX 153969488 153969668 -8630262 + (TA)n Simple_repeat Simple_repeat 1 180 0 312 149 30 45 chrX 153969768 153969835 -8630095 - L1MCa LINE L1 -4366 2060 1995 1061 149 0 36 chrX 153969837 153970005 -8629925 + AluJ SINE Alu 133 294 -18 369 0 0 0 chrX 153972847 153972888 -8627042 + (CA)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chrX 153972889 153972915 -8627015 + (TC)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chrX 153973206 153973226 -8626704 + (CAA)n Simple_repeat Simple_repeat 2 21 0 387 0 0 0 chrX 153973438 153973481 -8626449 + (CA)n Simple_repeat Simple_repeat 1 43 0 180 0 0 0 chrX 153975083 153975103 -8624827 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chrX 153976610 153976632 -8623298 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chrX 153977431 153977452 -8622478 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1926 35 0 0 chrX 153977452 153977681 -8622249 - L1PA5 LINE L1 -13 6141 5913 2410 82 0 0 chrX 153978785 153979090 -8620840 + AluSx SINE Alu 1 305 -7 3524 21 7 0 chrX 153979572 153979991 -8619939 - L1PA3 LINE L1 -1 6154 5733 658 277 6 69 chrX 153980481 153980684 -8619246 + LTR16A LTR ERVL 25 284 -166 2458 66 3 0 chrX 153980684 153980987 -8618943 + AluY SINE Alu 1 304 -7 658 277 6 69 chrX 153980987 153981140 -8618790 + LTR16A LTR ERVL 284 445 -5 476 278 0 0 chrX 153981987 153982102 -8617828 + MER117 DNA MER1_type 31 145 -52 368 329 102 31 chrX 153982162 153982484 -8617446 + L2 LINE L2 2831 3175 -97 644 270 69 39 chrX 153982659 153982773 -8617157 - MIR SINE MIR -41 221 97 2229 159 18 3 chrX 153982773 153983156 -8616774 + MLT1B LTR MaLR 2 390 0 644 270 69 39 chrX 153983156 153983245 -8616685 - MIR SINE MIR -165 97 12 604 291 26 21 chrX 153983335 153983524 -8616406 + MIR3 SINE MIR 19 208 0 1909 186 16 21 chrX 153984530 153984918 -8615012 + MLT1B LTR MaLR 5 390 0 2021 154 9 3 chrX 153984944 153985268 -8614662 + MER7A DNA MER2_type 22 345 -1 461 336 13 13 chrX 153985268 153985417 -8614513 - L2 LINE L2 -17 3255 3107 285 334 84 14 chrX 153985661 153986011 -8613919 - L2 LINE L2 -614 2700 2266 270 236 42 0 chrX 153987282 153987354 -8612576 - MIR SINE MIR -111 151 77 267 224 0 0 chrX 153987381 153987439 -8612491 - MER94 DNA DNA -76 58 1 206 234 21 0 chrX 153987440 153987487 -8612443 + L2 LINE L2 3262 3309 -4 288 111 0 0 chrX 153987916 153987961 -8611969 + (TG)n Simple_repeat Simple_repeat 1 45 0 351 127 0 0 chrX 153987961 153988024 -8611906 + (GA)n Simple_repeat Simple_repeat 2 64 0 21 71 0 0 chrX 153988381 153988423 -8611507 + AT_rich Low_complexity Low_complexity 1 42 0 483 63 0 0 chrX 153991277 153991340 -8608590 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 228 224 0 0 chrX 153991948 153991997 -8607933 + (TG)n Simple_repeat Simple_repeat 2 50 0 875 73 37 18 chrX 153992155 153992319 -8607611 + (TTTC)n Simple_repeat Simple_repeat 4 170 0 366 42 0 0 chrX 153992319 153992367 -8607563 + (CA)n Simple_repeat Simple_repeat 1 48 0 455 244 73 0 chrX 153992680 153992803 -8607127 - MIR SINE MIR -64 198 67 249 315 93 19 chrX 153993229 153993337 -8606593 + L2 LINE L2 3178 3293 -20 351 341 137 40 chrX 153996670 153996919 -8603011 + L2 LINE L2 2403 2675 -639 407 347 88 58 chrX 153997178 153997472 -8602458 + L2 LINE L2 2970 3272 0 2287 59 45 0 chrX 153997558 153997846 -8602084 + AluY SINE Alu 1 301 -10 1329 234 59 9 chrX 153999582 153999903 -8600027 + MER58B DNA MER1_type 1 337 -4 1200 205 133 40 chrX 154000247 154000667 -8599263 + MLT1C LTR MaLR 7 465 -2 354 269 56 45 chrX 154001415 154001586 -8598344 + MIR SINE MIR 27 207 -55 236 346 134 0 chrX 154002373 154002500 -8597430 - MIR3 SINE MIR -21 187 44 2270 134 34 17 chrX 154004148 154004506 -8595424 + THE1B LTR MaLR 1 364 0 11792 89 8 1 chrX 154004508 154006073 -8593857 + THE1B-int LTR MaLR 3 1579 -1 2202 142 31 17 chrX 154006074 154006433 -8593497 + THE1B LTR MaLR 1 364 0 2194 100 0 0 chrX 154007272 154007599 -8592331 - AluSc SINE Alu 0 327 1 1136 327 48 45 chrX 154009164 154009923 -8590007 - L2 LINE L2 0 3272 2503 245 290 61 53 chrX 154013491 154013622 -8586308 - L2 LINE L2 -1120 2194 2063 217 411 37 0 chrX 154014887 154014994 -8584936 + L2 LINE L2 3154 3264 -8 256 192 10 113 chrX 154016705 154016819 -8583111 + MIR SINE MIR 34 133 -75 2815 0 0 3 chrX 154017104 154017410 -8582520 + AluYa5 SINE Alu 1 305 -6 311 188 47 0 chrX 154017476 154017540 -8582390 + MIR SINE MIR 172 238 -24 2128 111 35 0 chrX 154018329 154018618 -8581312 + AluSx SINE Alu 1 299 -13 625 316 136 59 chrX 154019098 154020447 -8579483 + L2 LINE L2 1382 2835 -479 396 297 85 0 chrX 154020482 154020600 -8579330 + L2 LINE L2 3141 3268 -4 2381 87 6 6 chrX 154025313 154025625 -8574305 - AluSq SINE Alu -1 312 1 276 319 21 50 chrX 154025695 154025836 -8574094 - MIR3 SINE MIR -61 147 11 492 278 67 33 chrX 154026040 154026220 -8573710 - MIR3 SINE MIR -12 196 11 23 68 0 0 chrX 154026545 154026589 -8573341 + AT_rich Low_complexity Low_complexity 1 44 0 1814 189 2 25 chrX 154027578 154027985 -8571945 - L1MB7 LINE L1 -7 6177 5780 209 413 30 12 chrX 154028432 154028599 -8571331 + MIR SINE MIR 20 189 -73 473 277 0 8 chrX 154028960 154029079 -8570851 + MER5B DNA MER1_type 4 121 -57 688 265 57 53 chrX 154029349 154029594 -8570336 - MIR SINE MIR -2 260 15 227 238 0 0 chrX 154031110 154031152 -8568778 + polypyrimidine Low_complexity Low_complexity 1 42 0 1639 195 13 63 chrX 154031888 154032282 -8567648 + MLT1C LTR MaLR 1 374 -93 341 392 45 40 chrX 154032706 154032928 -8567002 - L2 LINE L2 -4 3268 3046 405 319 29 75 chrX 154034679 154034920 -8565010 - MIR SINE MIR -29 233 4 1446 138 80 22 chrX 154035083 154035351 -8564579 + MSTA LTR MaLR 79 385 -43 1796 115 71 47 chrX 154035351 154035716 -8564214 + THE1C LTR MaLR 1 374 -1 1446 138 80 22 chrX 154035716 154035763 -8564167 + MSTA LTR MaLR 385 428 0 253 290 0 0 chrX 154035896 154035965 -8563965 + MIR SINE MIR 63 131 -131 1048 151 112 49 chrX 154036079 154036383 -8563547 + MER33 DNA MER1_type 1 323 -1 203 229 21 0 chrX 154037871 154037919 -8562011 + (TA)n Simple_repeat Simple_repeat 2 50 0 2299 169 16 44 chrX 154038374 154038870 -8561060 - MLT1D LTR MaLR -23 482 1 214 313 0 16 chrX 154038877 154038941 -8560989 + L2 LINE L2 3227 3289 -24 485 293 11 23 chrX 154039789 154039963 -8559967 - MIR3 SINE MIR -31 177 6 704 283 29 0 chrX 154040984 154041157 -8558773 + MIR3 SINE MIR 30 207 -1 2265 234 39 13 chrX 154041968 154042512 -8557418 + REP3 LTR ERV 5 562 0 220 335 79 46 chrX 154043769 154044073 -8555857 + L3 LINE CR1 1047 1360 -217 23 0 0 0 chrX 154044414 154044437 -8555493 + AT_rich Low_complexity Low_complexity 1 23 0 354 276 0 31 chrX 154044632 154044730 -8555200 - MIR3 SINE MIR -6 202 108 261 0 0 0 chrX 154044773 154044802 -8555128 + (CA)n Simple_repeat Simple_repeat 2 30 0 215 281 47 0 chrX 154045517 154045581 -8554349 + L2 LINE L2 1932 1998 -1316 21 71 0 0 chrX 154045582 154045624 -8554306 + AT_rich Low_complexity Low_complexity 1 42 0 591 167 0 9 chrX 154045624 154045738 -8554192 - L1MB4 LINE L1 -8 6172 6060 420 328 92 57 chrX 154045742 154046395 -8553535 + L2 LINE L2 1983 2658 -656 1563 196 16 36 chrX 154046670 154046976 -8552954 - AluJo SINE Alu -12 300 1 1169 213 102 44 chrX 154046986 154047419 -8552511 + MLT1C LTR MaLR 10 467 0 21 57 0 0 chrX 154050190 154050225 -8549705 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chrX 154050283 154050303 -8549627 + (TA)n Simple_repeat Simple_repeat 2 21 0 230 224 94 24 chrX 154050410 154050495 -8549435 - L2 LINE L2 -2 3270 3180 280 337 12 0 chrX 154050672 154050758 -8549172 - MIR3 SINE MIR -41 167 81 1847 176 22 51 chrX 154051291 154051700 -8548230 + MLT2C1 LTR ERVL 1 397 0 568 233 55 7 chrX 154052027 154052173 -8547757 + L2 LINE L2 3161 3313 0 246 273 34 80 chrX 154053210 154053298 -8546632 - MIR SINE MIR -85 123 40 26 0 0 0 chrX 154053360 154053386 -8546544 + AT_rich Low_complexity Low_complexity 1 26 0 2411 120 25 3 chrX 154055318 154055685 -8544245 + THE1C LTR MaLR 1 375 0 247 210 0 16 chrX 154055821 154055883 -8544047 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 7645 23 2 0 chrX 154056255 154057327 -8542603 + L1PA4 LINE L1 5075 6152 -3 294 237 25 37 chrX 154057578 154057674 -8542256 - MIR SINE MIR -60 148 49 1175 66 11 17 chrX 154059034 154059101 -8540829 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 1175 66 11 17 chrX 154059101 154059282 -8540648 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 886 145 158 0 chrX 154062362 154062514 -8537416 + MLT1D LTR MaLR 330 505 0 24 32 0 0 chrX 154063034 154063065 -8536865 + AT_rich Low_complexity Low_complexity 1 31 0 181 402 16 16 chrX 154063535 154063657 -8536273 + MIR3 SINE MIR 4 125 -83 355 228 59 20 chrX 154063780 154063881 -8536049 - MIR SINE MIR -55 207 103 775 198 68 82 chrX 154065169 154065376 -8534554 + AluJo SINE Alu 85 288 -24 22 0 0 0 chrX 154065376 154065398 -8534532 + AT_rich Low_complexity Low_complexity 1 22 0 2524 110 6 3 chrX 154066276 154066639 -8533291 - THE1B LTR MaLR 0 364 1 243 223 56 40 chrX 154066741 154066864 -8533066 + MIR SINE MIR 74 205 -3 1474 224 202 28 chrX 154067406 154068065 -8531865 - L1MD3 LINE L1 -16 7979 7436 186 103 0 0 chrX 154068065 154068094 -8531836 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 1474 224 202 28 chrX 154068094 154068640 -8531290 - L1MD3 LINE L1 -559 7436 6470 444 295 64 36 chrX 154068713 154069351 -8530579 - L1M4 LINE L1 -2607 3539 2884 883 186 0 12 chrX 154069357 154069518 -8530412 + FRAM SINE Alu 11 169 -7 207 145 40 53 chrX 154069897 154069973 -8529957 + (TAAA)n Simple_repeat Simple_repeat 3 77 0 249 336 56 36 chrX 154070058 154070579 -8529351 + HAL1b LINE L1 75 605 -743 396 264 66 81 chrX 154070991 154071188 -8528742 - MIR SINE MIR -13 249 56 1037 286 105 50 chrX 154071249 154071961 -8527969 + L2 LINE L2 2449 3199 -114 652 279 19 10 chrX 154072827 154073035 -8526895 + L2 LINE L2 2763 2972 -342 2632 231 84 60 chrX 154077829 154078909 -8521021 - HAL1 LINE L1 -4 2503 1398 1686 227 87 18 chrX 154079008 154079457 -8520473 - HAL1 LINE L1 -2012 495 16 799 282 35 31 chrX 154079955 154080210 -8519720 + MIR SINE MIR 7 262 0 376 282 26 70 chrX 154080198 154080354 -8519576 - MIR SINE MIR -100 162 14 * 471 247 36 42 chrX 154080356 154080522 -8519408 - MER5B DNA MER1_type 0 178 14 22 35 0 0 chrX 154081390 154081419 -8518511 + AT_rich Low_complexity Low_complexity 1 29 0 403 253 45 68 chrX 154082351 154082572 -8517358 - MIR SINE MIR -31 231 16 276 293 24 81 chrX 154086808 154086931 -8512999 + L2 LINE L2 3193 3308 -5 308 220 22 44 chrX 154086936 154087027 -8512903 + GA-rich Low_complexity Low_complexity 2 90 0 346 251 59 11 chrX 154087030 154087153 -8512777 + MIR3 SINE MIR 75 207 -1 724 242 11 51 chrX 154087689 154087926 -8512004 + MIR SINE MIR 38 261 -1 2470 64 0 6 chrX 154088035 154088346 -8511584 - AluY SINE Alu -2 309 1 789 274 18 13 chrX 154088404 154088630 -8511300 - MIR SINE MIR -3 259 33 1993 82 64 14 chrX 154089065 154089346 -8510584 + AluSc SINE Alu 1 295 -14 315 197 0 0 chrX 154089680 154089741 -8510189 + L1MC1 LINE L1 5821 5881 -1927 * 1221 223 19 54 chrX 154089721 154090369 -8509561 + L1MC4 LINE L1 6107 6616 -1192 270 152 0 0 chrX 154090378 154090424 -8509506 + L1MC1 LINE L1 6022 6067 -266 694 120 0 19 chrX 154090427 154090535 -8509395 + L1MC1 LINE L1 6228 6333 0 454 138 25 0 chrX 154090535 154090615 -8509315 + L1MC4 LINE L1 7164 7245 -797 4368 176 12 34 chrX 154090624 154091513 -8508417 - L1MB7 LINE L1 -9 6175 5306 2945 159 50 75 chrX 154091511 154092215 -8507715 + L1MC4 LINE L1 7233 7918 -124 * 705 235 0 0 chrX 154092223 154092402 -8507528 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 675 190 25 17 chrX 154092421 154092782 -8507148 + (TATATG)n Simple_repeat Simple_repeat 1 364 0 235 281 22 0 chrX 154092798 154092887 -8507043 + L1MC4 LINE L1 6615 6705 -1337 377 211 61 43 chrX 154092904 154093043 -8506887 + L1MC4 LINE L1 7883 7992 -3 231 204 0 0 chrX 154093137 154093186 -8506744 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 326 336 84 72 chrX 154095296 154095546 -8504384 - L2 LINE L2 -16 3256 3004 312 27 0 0 chrX 154097086 154097123 -8502807 + (CA)n Simple_repeat Simple_repeat 1 37 0 278 138 75 0 chrX 154098012 154098092 -8501838 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 387 0 0 0 chrX 154098917 154098960 -8500970 + (CA)n Simple_repeat Simple_repeat 1 43 0 312 318 32 32 chrX 154099024 154099178 -8500752 + MIR SINE MIR 101 254 -8 543 176 59 25 chrX 154100803 154100922 -8499008 + MER97a DNA MER1_type? 108 230 -664 3915 185 44 36 chrX 154100971 154101954 -8497976 - L1MB7 LINE L1 -9 6175 5173 1708 166 60 89 chrX 154102812 154103293 -8496637 + MLT1C LTR MaLR 1 467 0 291 217 0 0 chrX 154104101 154104161 -8495769 - L2 LINE L2 0 3313 3254 191 36 36 0 chrX 154104431 154104459 -8495471 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 240 149 0 0 chrX 154104680 154104727 -8495203 + (TCC)n Simple_repeat Simple_repeat 2 48 0 210 118 0 0 chrX 154104725 154104759 -8495171 + (CAT)n Simple_repeat Simple_repeat 3 36 0 * 476 157 12 0 chrX 154104761 154104844 -8495086 - MIR SINE MIR -110 152 69 479 312 16 101 chrX 154106792 154107039 -8492891 - L2 LINE L2 -10 3262 3037 663 298 46 29 chrX 154107622 154107860 -8492070 + MIR SINE MIR 8 249 -13 22 0 0 0 chrX 154107972 154107994 -8491936 + AT_rich Low_complexity Low_complexity 1 22 0 391 319 24 24 chrX 154109128 154109297 -8490633 - L2 LINE L2 -179 3093 2925 320 353 34 17 chrX 154109978 154110097 -8489833 - L2 LINE L2 -9 3263 3143 943 272 134 50 chrX 154110305 154111103 -8488827 + L2 LINE L2 2412 3269 -44 221 309 0 0 chrX 154111133 154111188 -8488742 + GA-rich Low_complexity Low_complexity 2 56 0 202 118 0 29 chrX 154112710 154112744 -8487186 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 461 109 14 33 chrX 154113070 154113215 -8486715 + MER96B DNA MER1_type? 66 267 -150 3790 78 25 2 chrX 154113221 154113767 -8486163 - L1PA7 LINE L1 -856 5290 4729 6814 46 5 8 chrX 154113767 154114626 -8485304 + L1PA7 LINE L1 5293 6151 -3 348 182 0 11 chrX 154114634 154114722 -8485208 + MER96B DNA MER1_type? 266 352 -65 562 270 96 22 chrX 154115886 154116116 -8483814 + MIR SINE MIR 14 260 -2 362 162 120 2 chrX 154116206 154116286 -8483644 + MSTD LTR MaLR 1 75 -321 202 227 0 0 chrX 154116309 154116353 -8483577 + CT-rich Low_complexity Low_complexity 2 45 0 917 154 25 6 chrX 154116387 154116549 -8483381 + MSTD LTR MaLR 225 389 -7 925 277 24 52 chrX 154116618 154117153 -8482777 + MARNA DNA Mariner 9 528 -58 602 303 49 5 chrX 154118763 154118948 -8480982 - MIR3 SINE MIR 0 208 16 220 310 0 0 chrX 154119049 154119107 -8480823 - L2 LINE L2 0 3313 3256 470 294 14 21 chrX 154119545 154119688 -8480242 + L2 LINE L2 3172 3313 0 428 287 20 75 chrX 154119694 154119934 -8479996 - MIR SINE MIR -31 231 2 898 229 51 0 chrX 154120415 154120668 -8479262 + Charlie5 DNA MER1_type 2359 2624 0 351 273 64 0 chrX 154120669 154120779 -8479151 + L1ME3 LINE L1 6046 6162 0 3575 161 22 0 chrX 154121647 154122239 -8477691 - MER77 LTR ERV1 0 605 1 306 125 0 0 chrX 154122373 154122421 -8477509 + (T)n Simple_repeat Simple_repeat 1 48 0 860 226 37 28 chrX 154122819 154123036 -8476894 + MER20 DNA MER1_type 1 219 0 298 205 16 98 chrX 154123067 154123189 -8476741 - L1ME4a LINE L1 -60 6061 5950 355 100 0 0 chrX 154123201 154123251 -8476679 - Tigger5 DNA MER2_type -32 2291 2242 395 167 0 0 chrX 154123259 154123325 -8476605 - Tigger5 DNA MER2_type -2226 97 32 672 260 98 34 chrX 154124312 154124577 -8475353 + L3b LINE CR1 1103 1384 -199 182 268 70 42 chrX 154124821 154124892 -8475038 + L3 LINE CR1 1494 1566 -11 2302 104 0 0 chrX 154125169 154125481 -8474449 + AluSx SINE Alu 1 312 0 202 323 21 31 chrX 154126271 154126367 -8473563 + MIR SINE MIR 142 236 -26 257 248 141 58 chrX 154126849 154126970 -8472960 + L2 LINE L2 3165 3295 -18 684 200 0 0 chrX 154128018 154128148 -8471782 + MER5A DNA MER1_type 32 161 -28 248 232 0 18 chrX 154128158 154128214 -8471716 + MER5B DNA MER1_type 124 178 0 423 303 0 0 chrX 154128219 154128351 -8471579 + MER94 DNA DNA 3 134 0 335 255 90 35 chrX 154128614 154128759 -8471171 + MIR3 SINE MIR 2 154 -54 1383 185 59 15 chrX 154128766 154129106 -8470824 + L1MD3 LINE L1 6940 7294 -701 183 42 0 0 chrX 154129464 154129488 -8470442 + (GA)n Simple_repeat Simple_repeat 2 25 0 487 294 65 37 chrX 154130301 154130546 -8469384 + MIR SINE MIR 5 256 -6 354 262 10 19 chrX 154130696 154130799 -8469131 - MER5A DNA MER1_type -84 105 4 300 259 35 52 chrX 154131936 154132052 -8467878 + MIR SINE MIR 50 163 -99 22 0 0 0 chrX 154134219 154134241 -8465689 + AT_rich Low_complexity Low_complexity 1 22 0 208 146 0 55 chrX 154134274 154134329 -8465601 + (GAGAA)n Simple_repeat Simple_repeat 4 55 0 239 119 0 56 chrX 154134458 154134494 -8465436 - MIR SINE MIR -56 154 115 348 322 122 11 chrX 154134495 154134720 -8465210 + MIR SINE MIR 3 249 -13 21 0 0 0 chrX 154134824 154134845 -8465085 + AT_rich Low_complexity Low_complexity 1 21 0 646 256 99 29 chrX 154135016 154135258 -8464672 + MIR SINE MIR 1 259 -3 676 253 28 11 chrX 154135480 154135658 -8464272 + MER5A DNA MER1_type 9 189 0 244 227 0 0 chrX 154136499 154136543 -8463387 + L2 LINE L2 3216 3259 -13 23 33 0 0 chrX 154136867 154136897 -8463033 + AT_rich Low_complexity Low_complexity 1 30 0 1864 86 39 8 chrX 154137676 154137931 -8461999 - AluSc SINE Alu -13 296 34 305 280 19 28 chrX 154138023 154138130 -8461800 - MER5B DNA MER1_type -12 166 61 32 26 0 0 chrX 154138266 154138305 -8461625 + AT_rich Low_complexity Low_complexity 1 39 0 548 181 24 24 chrX 154138459 154138586 -8461344 + MER53 DNA DNA 1 127 -62 601 290 6 27 chrX 154138771 154138954 -8460976 - MIR SINE MIR -80 182 4 524 319 116 9 chrX 154139221 154139437 -8460493 - MIR SINE MIR 0 262 24 211 267 50 0 chrX 154139568 154139628 -8460302 - MIR SINE MIR -124 138 76 2366 79 0 0 chrX 154140312 154140604 -8459326 + AluY SINE Alu 1 292 -19 237 65 0 0 chrX 154141026 154141057 -8458873 + (CA)n Simple_repeat Simple_repeat 2 32 0 237 135 0 0 chrX 154142316 154142361 -8457569 - MIR SINE MIR -56 152 107 324 337 0 0 chrX 154143700 154143798 -8456132 - MIR SINE MIR -10 252 155 411 291 196 16 chrX 154143803 154143992 -8455938 - MIR SINE MIR -26 236 14 256 178 41 14 chrX 154146188 154146261 -8453669 - L1MC4 LINE L1 0 8042 7968 3191 187 14 20 chrX 154146268 154146957 -8452973 - L1MC4 LINE L1 -165 7877 7193 2030 194 73 46 chrX 154146956 154147523 -8452407 + L1MC4 LINE L1 6390 7006 -1036 * 621 170 9 0 chrX 154147545 154147657 -8452273 + L1MD1 LINE L1 6109 6221 -21 386 149 207 25 chrX 154147655 154147776 -8452154 + L1MC4 LINE L1 6987 7129 -913 * 306 0 0 0 chrX 154149746 154149780 -8450150 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 375 23 0 0 chrX 154149779 154149823 -8450107 + (GA)n Simple_repeat Simple_repeat 2 45 0 336 24 0 0 chrX 154152488 154152529 -8447401 + (TG)n Simple_repeat Simple_repeat 1 41 0 214 211 0 28 chrX 154154159 154154230 -8445700 + (TA)n Simple_repeat Simple_repeat 1 69 0 599 207 25 8 chrX 154155164 154155285 -8444645 - L3 LINE CR1 -3 1574 1452 2489 55 0 19 chrX 154155859 154156168 -8443762 - AluY SINE Alu -8 303 1 282 192 0 0 chrX 154156809 154156861 -8443069 + L2 LINE L2 3262 3313 0 746 287 26 0 chrX 154157158 154157353 -8442577 + MIR SINE MIR 45 244 -18 603 267 97 73 chrX 154157726 154158097 -8441833 + L3 LINE CR1 1197 1576 -1 23 0 0 0 chrX 154159868 154159891 -8440039 + AT_rich Low_complexity Low_complexity 1 23 0 420 360 41 16 chrX 154162098 154162315 -8437615 + MIR SINE MIR 16 236 -26 445 302 0 8 chrX 154163055 154163184 -8436746 - L2 LINE L2 0 3313 3186 361 259 50 15 chrX 154163453 154163583 -8436347 + MIR SINE MIR 16 154 -54 198 308 17 86 chrX 154164758 154164856 -8435074 + L2 LINE L2 3195 3284 -29 684 261 23 20 chrX 154164856 154165057 -8434873 + MIR3 SINE MIR 2 205 -3 214 298 18 0 chrX 154166826 154166883 -8433047 - L2 LINE L2 -6 3307 3250 458 283 13 46 chrX 154166993 154167145 -8432785 + MIR SINE MIR 70 216 -46 23 0 0 0 chrX 154167306 154167329 -8432601 + AT_rich Low_complexity Low_complexity 1 23 0 435 274 15 22 chrX 154167743 154167878 -8432052 + MIR SINE MIR 111 244 -18 345 24 0 0 chrX 154167918 154167960 -8431970 + (CA)n Simple_repeat Simple_repeat 2 43 0 231 36 0 0 chrX 154169534 154169562 -8430368 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 539 334 177 33 chrX 154172815 154173572 -8426358 - L1M2 LINE L1 -5486 1363 498 251 233 83 0 chrX 154174418 154174478 -8425452 + MIR SINE MIR 69 133 -75 1887 123 30 33 chrX 154177076 154177376 -8422554 - AluSx SINE Alu -13 299 1 304 236 180 22 chrX 154177390 154177479 -8422451 + L2 LINE L2 3184 3286 -27 840 269 24 20 chrX 154177879 154178128 -8421802 - MIR SINE MIR -10 252 3 186 333 126 0 chrX 154178194 154178281 -8421649 - MIR SINE MIR -55 153 56 220 268 186 21 chrX 154178714 154178811 -8421119 + MIR3 SINE MIR 95 207 -1 216 200 0 40 chrX 154180342 154180392 -8419538 - MIR3 SINE MIR -10 198 151 5480 120 17 44 chrX 154181947 154182986 -8416944 - L1MA4 LINE L1 -8 6292 5282 1978 190 16 45 chrX 154182988 154183478 -8416452 + L1 LINE L1 4849 5324 -822 198 351 67 15 chrX 154183520 154183654 -8416276 - MIR3 SINE MIR -65 143 3 255 200 90 90 chrX 154183917 154184062 -8415868 + L1ME4a LINE L1 5961 6105 -16 31 0 0 0 chrX 154184068 154184099 -8415831 + AT_rich Low_complexity Low_complexity 1 31 0 1970 237 90 15 chrX 154184656 154185256 -8414674 - L1MC4a LINE L1 -10 7798 7154 280 103 0 0 chrX 154185257 154185296 -8414634 - MLT2D LTR ERVL -375 39 1 361 292 88 0 chrX 154185297 154185410 -8414520 - MIR SINE MIR -127 135 13 222 337 41 0 chrX 154185793 154185891 -8414039 + L3 LINE CR1 639 740 -837 2300 137 16 31 chrX 154185911 154186334 -8413596 - Tigger2 DNA MER2_type -3 2715 2299 342 174 0 0 chrX 154186358 154186427 -8413503 - Tigger2 DNA MER2_type -367 2351 2283 466 104 0 0 chrX 154186428 154186495 -8413435 - Tigger2 DNA MER2_type -2651 67 1 257 197 0 5 chrX 154186770 154186827 -8413103 + MIR SINE MIR 66 122 -86 425 132 0 0 chrX 154186914 154186982 -8412948 - MADE1 DNA Mariner -12 68 1 6357 138 37 2 chrX 154187103 154188333 -8411597 - L1MC1 LINE L1 0 6333 5052 781 197 0 0 chrX 154188344 154188476 -8411454 - FLAM_A SINE Alu -1 132 1 813 229 34 0 chrX 154188476 154188712 -8411218 - L1MD3 LINE L1 -833 7162 6919 189 107 0 0 chrX 154188719 154188747 -8411183 + (T)n Simple_repeat Simple_repeat 1 28 0 2638 91 8 3 chrX 154188749 154189123 -8410807 - L1PB1 LINE L1 0 6151 5776 332 207 0 12 chrX 154189131 154189213 -8410717 + (TA)n Simple_repeat Simple_repeat 2 82 0 510 121 15 11 chrX 154189213 154189330 -8410600 - L1PA8A LINE L1 -340 5791 5674 * 3562 92 25 6 chrX 154189321 154189908 -8410022 - L1P5 LINE L1 -359 5792 5206 1014 260 46 25 chrX 154189908 154190231 -8409699 - L1MD3 LINE L1 -1020 6975 5149 5185 145 16 5 chrX 154190320 154191319 -8408611 - L1PA16 LINE L1 -1 6165 5159 323 266 84 36 chrX 154191329 154191743 -8408187 - L1M4 LINE L1 -860 5286 4853 560 282 50 15 chrX 154191787 154192124 -8407806 - L1M4 LINE L1 -2211 3935 3587 591 294 92 95 chrX 154192146 154192824 -8407106 - L1M4 LINE L1 -2582 3564 2890 2319 115 0 0 chrX 154192824 154193129 -8406801 + AluSx SINE Alu 1 305 -7 591 294 92 95 chrX 154193129 154193621 -8406309 - L1M4 LINE L1 -3256 2890 2398 3070 220 50 9 chrX 154193629 154194553 -8405377 + L1M4 LINE L1 2227 3188 -2958 368 316 58 35 chrX 154194821 154195302 -8404628 - HAL1b LINE L1 -768 580 89 450 248 24 112 chrX 154196965 154197079 -8402851 - MLT1L LTR MaLR -94 514 392 468 0 0 0 chrX 154197079 154197131 -8402799 + (TG)n Simple_repeat Simple_repeat 1 52 0 450 248 24 112 chrX 154197131 154197222 -8402708 - MLT1L LTR MaLR -216 392 230 465 295 8 8 chrX 154198345 154198474 -8401456 - MIR SINE MIR -63 145 17 2286 55 0 4 chrX 154198671 154198977 -8400953 - AluY SINE Alu 0 311 13 576 297 28 4 chrX 154201284 154201470 -8398460 + MIR SINE MIR 4 188 -62 932 220 116 61 chrX 154201714 154202060 -8397870 - MLT1A1 LTR MaLR 0 365 1 760 91 9 0 chrX 154202409 154202519 -8397411 - MSTB1 LTR MaLR -4 428 318 565 309 6 6 chrX 154202519 154202684 -8397246 - MIR SINE MIR -96 166 2 226 211 19 0 chrX 154203257 154203309 -8396621 + L2 LINE L2 3258 3310 -3 251 262 149 44 chrX 154205104 154205379 -8394551 + L2 LINE L2 1795 2098 -1216 269 357 52 35 chrX 154206019 154206276 -8393654 + L2 LINE L2 2791 3047 -225 567 270 141 0 chrX 154206403 154206566 -8393364 + MER5A DNA MER1_type 4 189 0 281 301 41 41 chrX 154206815 154206938 -8392992 + L2 LINE L2 3177 3299 -14 270 0 0 0 chrX 154206939 154206969 -8392961 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 403 297 210 18 chrX 154209283 154209502 -8390428 + MIR SINE MIR 2 262 0 266 194 60 0 chrX 154209967 154210034 -8389896 - MER103 DNA DNA -7 159 89 611 333 16 8 chrX 154210139 154210382 -8389548 - MLT1I LTR MaLR -164 245 1 188 188 275 0 chrX 154210382 154210451 -8389479 + MIR SINE MIR 113 200 -62 990 197 30 0 chrX 154211517 154211720 -8388210 - MER6B DNA MER2_type -1 209 1 2007 212 44 25 chrX 154211956 154212587 -8387343 + L1MEc LINE L1 715 1357 -5039 809 234 50 10 chrX 154212588 154212789 -8387141 - L2 LINE L2 -687 2627 2419 197 276 43 52 chrX 154215015 154215131 -8384799 - L2 LINE L2 -314 2958 2844 207 316 149 9 chrX 154215453 154215567 -8384363 - L2 LINE L2 -1 3312 3183 189 309 71 71 chrX 154215637 154215763 -8384167 + L2 LINE L2 3177 3302 -11 379 331 60 8 chrX 154216040 154216173 -8383757 + L2 LINE L2 3133 3272 0 192 310 64 90 chrX 154216199 154216520 -8383410 - L2 LINE L2 -191 3081 2769 359 263 47 52 chrX 154216536 154216582 -8383348 - MIR SINE MIR -50 212 167 1072 182 5 0 chrX 154216582 154216769 -8383161 + MER5A DNA MER1_type 2 189 0 359 263 47 52 chrX 154216769 154216926 -8383004 - MIR SINE MIR -95 167 15 229 321 79 36 chrX 154216972 154217112 -8382818 - L2 LINE L2 -575 2739 2594 208 184 0 0 chrX 154217120 154217158 -8382772 - MIR SINE MIR -112 150 113 839 126 28 7 chrX 154217752 154217895 -8382035 - L1MA9 LINE L1 0 6312 6167 509 324 73 12 chrX 154218072 154218402 -8381528 - L1ME LINE L1 -429 5733 5384 794 305 78 48 chrX 154218405 154218881 -8381049 + L2 LINE L2 2130 2619 -695 409 293 98 8 chrX 154218922 154219045 -8380885 + L2 LINE L2 3136 3269 -3 284 322 105 35 chrX 154219732 154219903 -8380027 + MER5A DNA MER1_type 1 183 -6 2412 91 0 0 chrX 154220288 154220596 -8379334 - AluY SINE Alu -3 308 1 391 48 106 0 chrX 154221047 154221151 -8378779 + (TA)n Simple_repeat Simple_repeat 1 115 0 351 0 0 0 chrX 154221603 154221642 -8378288 + (CA)n Simple_repeat Simple_repeat 2 40 0 393 22 0 0 chrX 154222500 154222546 -8377384 + (CA)n Simple_repeat Simple_repeat 2 47 0 1801 175 25 64 chrX 154222663 154223069 -8376861 + MLT1B LTR MaLR 1 390 0 429 235 49 10 chrX 154223079 154223181 -8376749 - L2 LINE L2 0 3313 3208 684 269 130 5 chrX 154223192 154223408 -8376522 + MIR SINE MIR 20 262 0 443 343 54 62 chrX 154223426 154223818 -8376112 - L2 LINE L2 -136 3177 2791 198 338 0 15 chrX 154223851 154223919 -8376011 - MER5A DNA MER1_type -30 159 93 277 271 0 128 chrX 154223925 154224058 -8375872 - L2 LINE L2 -29 3284 3169 967 148 0 27 chrX 154224063 154224212 -8375718 + FRAM SINE Alu 1 137 -39 1126 203 119 35 chrX 154224348 154224658 -8375272 - L2 LINE L2 -1054 2260 1925 3254 224 88 8 chrX 154224658 154225488 -8374442 - L2 LINE L2 -1777 1537 642 245 275 25 0 chrX 154225571 154225651 -8374279 - L2 LINE L2 -511 2803 2722 * 303 313 0 0 chrX 154225650 154225730 -8374200 - MIR SINE MIR -112 150 71 280 291 64 9 chrX 154227223 154227333 -8372597 + L2 LINE L2 3127 3242 -30 183 284 138 60 chrX 154228462 154228578 -8371352 + L2 LINE L2 3148 3272 0 196 328 0 0 chrX 154228640 154228701 -8371229 + MER5B DNA MER1_type 12 72 -106 2248 173 27 27 chrX 154228753 154229233 -8370697 - L1MB7 LINE L1 -54 6130 5651 281 278 30 26 chrX 154229275 154229391 -8370539 - MIR SINE MIR -77 131 13 2339 137 0 6 chrX 154230280 154230645 -8369285 + MLT1A1 LTR MaLR 1 363 -2 201 226 38 19 chrX 154230705 154230758 -8369172 + L2 LINE L2 3219 3272 0 200 186 17 0 chrX 154231048 154231107 -8368823 + GA-rich Low_complexity Low_complexity 1 60 0 285 217 87 0 chrX 154231945 154232014 -8367916 - L2 LINE L2 -1 3312 3238 180 254 34 17 chrX 154233649 154233708 -8366222 - L2 LINE L2 -259 3054 2995 440 261 174 19 chrX 154233716 154233877 -8366053 - MIR SINE MIR -14 248 63 498 339 68 24 chrX 154233942 154234193 -8365737 - L2 LINE L2 -337 2977 2716 269 348 22 53 chrX 154234198 154234425 -8365505 - L2 LINE L2 -752 2562 2343 1605 275 74 24 chrX 154234449 154235453 -8364477 + L2 LINE L2 2189 3309 -4 269 209 15 30 chrX 154235996 154236063 -8363867 - L2 LINE L2 -1037 2277 2212 518 345 146 13 chrX 154236439 154236905 -8363025 - L2 LINE L2 -1163 2151 1624 812 269 46 0 chrX 154236910 154237129 -8362801 - MIR SINE MIR -24 238 10 358 292 152 35 chrX 154237186 154237528 -8362402 - L2 LINE L2 -1768 1546 1165 425 243 29 0 chrX 154237538 154237641 -8362289 - MIR SINE MIR 0 262 157 311 346 28 58 chrX 154237696 154237889 -8362041 + L2 LINE L2 2470 2648 -666 2146 120 60 20 chrX 154237889 154238239 -8361691 + THE1B LTR MaLR 1 364 0 311 346 28 58 chrX 154238239 154238406 -8361524 + L2 LINE L2 2648 2819 -495 185 210 48 65 chrX 154238633 154238695 -8361235 + L2 LINE L2 2335 2395 -919 3004 232 70 13 chrX 154238718 154239708 -8360222 - L1ME3 LINE L1 -35 6127 5078 849 330 59 43 chrX 154239720 154240500 -8359430 + L2 LINE L2 2462 3248 -24 257 0 30 0 chrX 154240500 154240533 -8359397 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 429 301 92 24 chrX 154241343 154241549 -8358381 - L2 LINE L2 0 3313 3094 315 238 71 27 chrX 154241601 154241715 -8358215 - MLT1L LTR MaLR -93 521 305 919 219 40 18 chrX 154241798 154242022 -8357908 + MER69 DNA AcHobo 1 229 -2297 843 234 48 0 chrX 154242032 154242241 -8357689 + MER69 DNA AcHobo 426 644 -582 2078 218 94 12 chrX 154242276 154242968 -8356962 + MER69 DNA AcHobo 1777 2525 -1 685 276 61 0 chrX 154243027 154243223 -8356707 + L2 LINE L2 1121 1328 -1986 2702 160 11 4 chrX 154243223 154243674 -8356256 + MLT2B2 LTR ERVL 1 454 -61 581 83 71 6 chrX 154243719 154243887 -8356043 + (TA)n Simple_repeat Simple_repeat 2 180 0 27 0 0 0 chrX 154243887 154243914 -8356016 + AT_rich Low_complexity Low_complexity 1 27 0 226 108 27 0 chrX 154243914 154243951 -8355979 + MLT2B2 LTR ERVL 427 464 0 671 246 277 4 chrX 154243951 154244211 -8355719 + L2 LINE L2 1324 1654 -1660 12565 34 3 3 chrX 154244313 154246668 -8353262 + L1PA4 LINE L1 3742 6096 -59 1342 88 28 18 chrX 154346673 154346890 -8253040 + L1MA3 LINE L1 6087 6305 0 221 222 37 19 chrX 154347934 154347988 -8251942 - L2 LINE L2 -8 3264 3210 * 885 288 9 0 chrX 154347955 154348170 -8251760 - MIR SINE MIR -23 239 23 490 229 8 53 chrX 154350196 154350327 -8249603 - L1MD3 LINE L1 -345 7650 7526 330 253 0 0 chrX 154350333 154350408 -8249522 + L2 LINE L2 3239 3313 0 662 268 50 92 chrX 154351078 154351395 -8248535 - L2 LINE L2 -1 3312 3009 431 270 11 48 chrX 154352233 154352422 -8247508 - L1MC5 LINE L1 -824 7137 6956 746 168 0 0 chrX 154352425 154352562 -8247368 - L1MC3 LINE L1 -13 7772 7636 1134 254 25 11 chrX 154352565 154352927 -8247003 + L1MCb LINE L1 780 1146 -4899 844 289 32 36 chrX 154352932 154353462 -8246468 + L1MC5 LINE L1 7400 7927 -34 792 312 145 52 chrX 154353485 154354705 -8245225 + L1 LINE L1 3374 4707 -1439 1148 181 68 93 chrX 154357205 154357345 -8242585 - MER50 LTR ERV1 0 734 592 207 0 0 0 chrX 154357345 154357368 -8242562 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1148 181 68 93 chrX 154357368 154357503 -8242427 - MER50 LTR ERV1 -142 592 465 2112 109 70 50 chrX 154357503 154357860 -8242070 - THE1B LTR MaLR 0 364 1 1148 181 68 93 chrX 154357860 154357893 -8242037 - MER50 LTR ERV1 -269 465 433 1046 124 47 0 chrX 154357887 154358056 -8241874 - MER50 LTR ERV1 -505 229 53 * 308 173 0 0 chrX 154358096 154358148 -8241782 - MER50 LTR ERV1 -682 52 1 8517 177 19 64 chrX 154359686 154361525 -8238405 - MER52A LTR ERV1 0 1755 1 2509 67 13 0 chrX 154362720 154363019 -8236911 + AluSp SINE Alu 1 303 -10 408 288 102 23 chrX 154363021 154363236 -8236694 - MIR SINE MIR -11 251 20 16074 124 29 68 chrX 154364349 154365516 -8234414 + Tigger2 DNA MER2_type 1 1212 -1506 432 37 0 0 chrX 154365516 154365570 -8234360 + (TA)n Simple_repeat Simple_repeat 1 54 0 16074 124 29 68 chrX 154365570 154367231 -8232699 + Tigger2 DNA MER2_type 1212 2718 0 283 250 98 36 chrX 154367283 154367395 -8232535 + MLT1I LTR MaLR 19 137 -272 462 238 42 30 chrX 154368929 154369097 -8230833 - L1M4 LINE L1 -1511 4635 4466 5335 91 19 5 chrX 154369520 154370276 -8229654 + L1PB2 LINE L1 5386 6151 0 3342 80 7 22 chrX 154370489 154370940 -8228990 + MLT2A1 LTR ERVL 1 444 0 2702 97 5 5 chrX 154371026 154371396 -8228534 - THE1C LTR MaLR 0 375 6 1838 188 60 40 chrX 154371436 154371888 -8228042 - MLT1C LTR MaLR -5 462 2 181 273 0 0 chrX 154372319 154372363 -8227567 - L2 LINE L2 -3 3269 3226 303 266 0 32 chrX 154372668 154372762 -8227168 + L2 LINE L2 3179 3269 -3 195 271 33 57 chrX 154375218 154375340 -8224590 + MIR SINE MIR 19 137 -125 382 279 101 6 chrX 154375861 154376019 -8223911 - MIR SINE MIR -1 261 89 366 184 0 0 chrX 154376733 154376809 -8223121 + (CGG)n Simple_repeat Simple_repeat 2 77 0 335 235 67 34 chrX 154377703 154377822 -8222108 + L2 LINE L2 3141 3263 -9 208 211 197 0 chrX 154377861 154377932 -8221998 + MIR3 SINE MIR 83 167 -41 438 290 88 112 chrX 154379219 154379584 -8220346 + L2 LINE L2 2915 3270 -2 187 331 55 88 chrX 154380633 154380905 -8219025 - L2 LINE L2 -3 3269 3007 4037 175 35 59 chrX 154380983 154381962 -8217968 + LTR5 LTR ERVK 1 955 -14 185 274 60 24 chrX 154381980 154382064 -8217866 - L2 LINE L2 -356 2958 2872 339 335 139 9 chrX 154382281 154382496 -8217434 - MIR SINE MIR 0 262 20 1811 246 60 14 chrX 154382627 154383111 -8216819 + MARNA DNA Mariner 65 570 -16 257 330 75 0 chrX 154383587 154383693 -8216237 - MIR SINE MIR -72 136 23 270 290 0 0 chrX 154383906 154383975 -8215955 + (TG)n Simple_repeat Simple_repeat 1 69 0 186 189 0 0 chrX 154384110 154384147 -8215783 + CT-rich Low_complexity Low_complexity 4 40 0 1464 181 34 0 chrX 154385316 154385608 -8214322 + L1MA4 LINE L1 5999 6300 0 2021 152 58 80 chrX 154386463 154386977 -8212953 + MLT1D LTR MaLR 1 503 -2 2376 187 76 31 chrX 154387751 154388291 -8211639 + Charlie1a DNA MER1_type 5 568 -887 2314 12 0 0 chrX 154388291 154388544 -8211386 - L1PA3 LINE L1 -448 5707 5455 3859 38 0 0 chrX 154388544 154388992 -8210938 + L1PA3 LINE L1 5706 6155 0 3767 191 51 11 chrX 154389051 154389892 -8210038 + Charlie1a DNA MER1_type 555 1429 -26 210 282 30 84 chrX 154389937 154390068 -8209862 - MIR SINE MIR -38 224 101 272 274 212 0 chrX 154390375 154390488 -8209442 + MIR SINE MIR 2 138 -124 2224 189 20 7 chrX 154390491 154390576 -8209354 - L1ME1 LINE L1 -196 5970 5886 2708 251 102 16 chrX 154390576 154391786 -8208144 - L1MA5A LINE L1 -408 5889 4565 1529 179 96 40 chrX 154391799 154392230 -8207700 + MLT1D LTR MaLR 1 505 0 331 145 116 0 chrX 154392242 154392311 -8207619 - L1MEc LINE L1 -1593 4622 4546 1447 184 39 36 chrX 154392316 154392653 -8207277 + MLT1A1 LTR MaLR 2 339 -26 3077 205 62 75 chrX 154392653 154393651 -8206279 - L1MEc LINE L1 -1684 4531 3547 2970 235 62 36 chrX 154393668 154394679 -8205251 - L1MEc LINE L1 -2768 3447 2410 513 121 0 121 chrX 154394679 154394795 -8205135 + MLT1E2 LTR MaLR 1 102 -524 2129 193 32 67 chrX 154394826 154395404 -8204526 - MLT1E2 LTR MaLR -67 558 3 2438 199 21 29 chrX 154395410 154395932 -8203998 + MLT1E2 LTR MaLR 105 622 -4 905 193 56 17 chrX 154395935 154396168 -8203762 - L1MEc LINE L1 -3942 2454 2213 592 268 71 27 chrX 154396145 154396369 -8203561 - L1MEc LINE L1 -6129 267 34 * 269 334 75 44 chrX 154396565 154396927 -8203003 + L2 LINE L2 2898 3270 -2 2420 90 13 3 chrX 154398034 154398344 -8201586 - AluSq SINE Alu 0 313 1 2070 105 0 0 chrX 154399896 154400162 -8199768 + AluSx SINE Alu 35 300 -12 1831 151 128 28 chrX 154400361 154400719 -8199211 - MLT2C1 LTR ERVL 0 397 4 292 258 11 45 chrX 154400794 154400883 -8199047 - L2 LINE L2 -1 3312 3227 433 247 274 16 chrX 154400922 154401112 -8198818 - MIR SINE MIR -10 252 14 732 89 0 0 chrX 154401525 154401615 -8198315 - MER2 DNA MER2_type -254 91 2 1944 222 57 53 chrX 154402035 154402599 -8197331 + MER119 DNA MER1_type 18 583 0 821 270 119 71 chrX 154404514 154405044 -8194886 - L1ME4a LINE L1 -2 6119 5559 862 165 0 0 chrX 154405044 154405177 -8194753 + FLAM_C SINE Alu 1 133 0 821 270 119 71 chrX 154405177 154405209 -8194721 - L1ME4a LINE L1 -562 5559 5530 1752 265 88 25 chrX 154406068 154407136 -8192794 + L1MD2 LINE L1 4987 6115 -244 204 214 0 0 chrX 154409175 154409217 -8190713 + MIR SINE MIR 106 147 -115 492 257 38 16 chrX 154409848 154410031 -8189899 - MER5A DNA MER1_type 0 189 3 407 254 124 24 chrX 154412582 154412751 -8187179 - MIR SINE MIR -70 192 7 2555 53 3 0 chrX 154416149 154416452 -8183478 + AluY SINE Alu 1 304 -7 626 182 14 0 chrX 154416813 154416961 -8182969 + CT-rich Low_complexity Low_complexity 1 150 0 180 111 0 0 chrX 154416964 154416991 -8182939 + (TC)n Simple_repeat Simple_repeat 2 28 0 2339 105 0 0 chrX 154417606 154417911 -8182019 + AluSg SINE Alu 1 305 -5 1349 230 64 44 chrX 154417912 154418522 -8181408 + L1MC/D LINE L1 5182 5808 -745 975 333 97 39 chrX 154418586 154419542 -8180388 + L1M4 LINE L1 3562 4573 -1573 300 244 0 78 chrX 154420120 154420210 -8179720 + L1MC4 LINE L1 6618 6700 -1342 338 21 0 42 chrX 154421442 154421490 -8178440 + (CACCC)n Simple_repeat Simple_repeat 1 46 0 192 91 68 0 chrX 154421890 154421934 -8177996 + C-rich Low_complexity Low_complexity 1 47 0 479 304 75 26 chrX 154427818 154428045 -8171885 - MIR SINE MIR -12 250 13 2257 125 86 11 chrX 154429237 154429678 -8170252 - MER1A DNA MER1_type 0 529 1 1855 168 3 0 chrX 154429871 154430162 -8169768 - AluSx SINE Alu -20 292 1 1407 304 37 22 chrX 154430215 154430995 -8168935 - L1M4 LINE L1 -2926 3220 2429 2045 247 57 20 chrX 154430997 154431720 -8168210 - L1MD2 LINE L1 -136 6460 5721 1251 239 124 5 chrX 154431720 154432163 -8167767 + LTR54B LTR ERV1 1 496 -2 2038 286 35 7 chrX 154432191 154432415 -8167515 - L1MD2 LINE L1 -870 5694 5478 2451 77 0 16 chrX 154432415 154432755 -8167175 - AluSg SINE Alu 0 310 1 2038 286 35 7 chrX 154432755 154433424 -8166506 - L1MD2 LINE L1 -1086 5478 4776 441 85 98 37 chrX 154433641 154433723 -8166207 - L1PA7 LINE L1 -9 6145 6059 3132 51 0 0 chrX 154433740 154434133 -8165797 + L1PA7 LINE L1 5703 6095 -59 2639 222 88 83 chrX 154434190 154435339 -8164591 + L1MCb LINE L1 5 1162 -4883 1909 107 0 77 chrX 154435339 154435637 -8164293 + AluSx SINE Alu 21 295 -17 2639 222 88 83 chrX 154435637 154435671 -8164259 + L1MCb LINE L1 1162 1194 -4851 373 250 7 56 chrX 154435682 154435826 -8164104 + L1MCb LINE L1 1162 1298 -5266 * 3152 275 49 43 chrX 154435822 154437416 -8162514 - L1MD2 LINE L1 -1787 4777 3195 249 33 0 0 chrX 154437416 154437446 -8162484 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1934 152 0 24 chrX 154437448 154437582 -8162348 + AluSx SINE Alu 6 142 -170 2378 77 0 30 chrX 154437582 154437882 -8162048 + AluSc SINE Alu 1 291 -18 1934 152 0 24 chrX 154437882 154438043 -8161887 + AluSx SINE Alu 142 294 -18 3152 275 49 43 chrX 154438043 154438129 -8161801 - L1MD2 LINE L1 -3369 3195 3083 1393 214 72 7 chrX 154438483 154438899 -8161031 - L1MD2 LINE L1 -4926 1638 1196 3559 223 25 24 chrX 154438925 154440001 -8159929 - L1MB3 LINE L1 0 6183 5107 2514 208 18 42 chrX 154439995 154440452 -8159478 - L1MD2 LINE L1 -4849 1196 758 * 657 211 0 0 chrX 154440452 154440580 -8159350 - FLAM_C SINE Alu -4 129 2 2514 208 18 42 chrX 154440580 154440781 -8159149 - L1MD2 LINE L1 -5287 758 554 5102 253 65 41 chrX 154441166 154443105 -8156825 - HERVL68 LTR ERVL 0 3037 1052 1310 223 121 32 chrX 154443121 154443560 -8156370 - LTR55 LTR ERV -22 526 49 292 143 20 0 chrX 154443659 154443708 -8156222 - LTR55 LTR ERV -498 50 1 619 271 0 13 chrX 154443708 154443863 -8156067 - HERVL68 LTR ERVL -1988 1049 897 444 232 0 0 chrX 154444125 154444224 -8155706 + LTR54B LTR ERV1 1 99 -399 2355 67 3 13 chrX 154448727 154449026 -8150904 + AluY SINE Alu 1 296 -15 1057 133 38 0 chrX 154449026 154449184 -8150746 + AluY SINE Alu 133 296 -15 260 330 58 0 chrX 154449329 154449432 -8150498 - L2 LINE L2 0 3272 3164 495 284 90 24 chrX 154450334 154450545 -8149385 - MIR SINE MIR -25 237 13 381 289 49 53 chrX 154451940 154452410 -8147520 - L1M4 LINE L1 -2926 3220 2753 1063 252 78 25 chrX 154452444 154452892 -8147038 - L1M4 LINE L1 -3360 2786 2315 903 265 57 43 chrX 154452966 154453385 -8146545 - L1MD2 LINE L1 -247 6112 5688 288 250 33 15 chrX 154453401 154453530 -8146400 - L1MD2 LINE L1 -720 5445 5347 5244 193 26 15 chrX 154453532 154455714 -8144216 + L1PA15 LINE L1 3956 6160 -5 25 0 0 0 chrX 154455729 154455754 -8144176 + AT_rich Low_complexity Low_complexity 1 25 0 847 256 24 31 chrX 154455779 154456072 -8143858 - L1ME LINE L1 -577 5589 5299 403 272 18 0 chrX 154456080 154456194 -8143736 + LTR54B LTR ERV1 11 126 -372 3085 107 64 5 chrX 154457396 154457835 -8142095 - MER4C LTR ERV1 0 465 1 550 164 0 64 chrX 154457842 154457877 -8142053 - MER4C-int LTR ERV1 -2 6596 6560 1895 135 71 41 chrX 154457877 154458241 -8141689 - THE1C LTR MaLR 0 375 1 550 164 0 64 chrX 154458241 154458315 -8141615 - MER4C-int LTR ERV1 -38 6560 6494 2690 230 62 11 chrX 154458315 154459046 -8140884 - L1MC3 LINE L1 -1693 6092 5325 274 154 99 55 chrX 154459048 154459069 -8140861 - MER57-int LTR ERV1 -4414 2184 2165 2388 77 3 3 chrX 154459069 154459367 -8140563 + AluSp SINE Alu 1 298 -15 274 154 99 55 chrX 154459367 154459436 -8140494 - MER57-int LTR ERV1 -4433 2165 2090 31 58 0 0 chrX 154459436 154459488 -8140442 + AT_rich Low_complexity Low_complexity 1 52 0 442 159 18 118 chrX 154459547 154459745 -8140185 - MER57-int LTR ERV1 -4317 698 565 4304 45 0 22 chrX 154459780 154460289 -8139641 - L1PA5 LINE L1 -6 6148 5651 28167 80 9 6 chrX 154460289 154464041 -8135889 - L1P LINE L1 -2373 3773 12 1774 212 95 31 chrX 154464092 154464606 -8135324 + LTR10A LTR ERV1 2 548 -61 4786 214 63 78 chrX 154464640 154466223 -8133707 + HERVI LTR ERV1 25 1583 -6202 492 172 11 69 chrX 154466271 154466533 -8133397 + HERV17 LTR ERV1 840 1086 -5810 * 5584 94 20 46 chrX 154466532 154467625 -8132305 + HERV17 LTR ERV1 709 1720 -5176 370 193 169 0 chrX 154467627 154467710 -8132220 - LTR8 LTR ERV1 -438 253 157 3242 87 15 2 chrX 154467713 154468187 -8131743 + Harlequin LTR ERV1 1813 2292 -4604 3277 58 29 1 chrX 154468187 154468695 -8131235 + LTR10C LTR ERV1 3 591 0 642 284 18 6 chrX 154468695 154468864 -8131066 + LTR10C-int LTR ERV1 5 175 -6474 306 156 0 0 chrX 154469812 154469876 -8130054 + GA-rich Low_complexity Low_complexity 1 64 0 3221 124 34 8 chrX 154469938 154470661 -8129269 + Harlequin LTR ERV1 1897 3271 -2315 4379 285 56 35 chrX 154470844 154472512 -8127418 + Harlequin LTR ERV1 4363 6064 -585 321 313 56 42 chrX 154472547 154472761 -8127169 + Harlequin LTR ERV1 6431 6647 -2 3495 47 15 1 chrX 154472764 154473281 -8126649 + LTR10C LTR ERV1 1 591 0 15266 103 8 5 chrX 154473281 154475699 -8124231 + Harlequin LTR ERV1 2280 7784 -1 1444 175 250 38 chrX 154475704 154476156 -8123774 + LTR10A LTR ERV1 1 548 -61 1485 134 95 143 chrX 154476184 154476617 -8123313 - MER4-int LTR ERV1 -5438 1160 749 2424 222 81 53 chrX 154476638 154477292 -8122638 + L1MCb LINE L1 368 1054 -5063 2386 77 0 39 chrX 154477292 154477602 -8122328 - AluY SINE Alu -13 298 1 2424 222 81 53 chrX 154477602 154477822 -8122108 + L1MCb LINE L1 1054 1266 -4851 3340 271 63 32 chrX 154477840 154479389 -8120541 - L1M4 LINE L1 -1784 4362 2757 2066 42 13 0 chrX 154479389 154479627 -8120303 - AluY SINE Alu -12 299 59 3340 271 63 32 chrX 154479627 154479722 -8120208 - L1M4 LINE L1 -3389 2757 2666 2232 109 157 21 chrX 154479906 154480281 -8119649 - MSTA LTR MaLR -2 426 1 8857 163 62 15 chrX 154480281 154481540 -8118390 - MSTA-int LTR MaLR 0 1580 238 2287 97 7 0 chrX 154481540 154481839 -8118091 - AluSp SINE Alu -12 301 1 8857 163 62 15 chrX 154481839 154482087 -8117843 - MSTA-int LTR MaLR -1342 238 3 2253 129 156 8 chrX 154482089 154482462 -8117468 - MSTA LTR MaLR 0 428 1 1963 182 45 0 chrX 154482642 154483065 -8116865 - L1MCa LINE L1 -4926 1638 1197 3859 225 27 22 chrX 154483078 154484140 -8115790 - L1MB3 LINE L1 0 6183 5117 2335 227 54 9 chrX 154484155 154484769 -8115161 - L1MCa LINE L1 -4851 1194 568 2015 221 56 24 chrX 154485462 154486001 -8113929 - MER68 LTR ERV1 -6 556 1 5769 245 87 23 chrX 154486001 154487856 -8112074 - HERVL68 LTR ERVL -12 3025 1052 1483 243 56 5 chrX 154487875 154488323 -8111607 - LTR55 LTR ERV -23 525 55 240 191 64 0 chrX 154488423 154488470 -8111460 - LTR55 LTR ERV -498 50 1 671 230 13 13 chrX 154488470 154488622 -8111308 - HERVL68 LTR ERVL -1988 1049 898 195 42 0 0 chrX 154488623 154488647 -8111283 + (CA)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chrX 154488646 154488667 -8111263 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 1102 215 79 12 chrX 154488903 154489317 -8110613 + LTR54 LTR ERV1 20 510 0 335 316 53 18 chrX 154489318 154489607 -8110323 + MER51-int LTR ERV1 1901 2210 -4121 313 267 82 7 chrX 154489622 154489757 -8110173 + MER51-int LTR ERV1 346 490 -7047 368 92 27 0 chrX 154490000 154490048 -8109882 - L1P LINE L1 -776 5375 5319 5112 97 5 50 chrX 154490048 154490454 -8109476 + L1PB1 LINE L1 5419 5778 -373 380 37 19 0 chrX 154490454 154490508 -8109422 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5112 97 5 50 chrX 154490508 154490865 -8109065 + L1PB1 LINE L1 5778 6149 -2 368 92 27 0 chrX 154490865 154490887 -8109043 - L1P LINE L1 -832 5319 5299 2925 104 31 0 chrX 154491084 154491498 -8108432 - L1PA13 LINE L1 -300 5863 5437 2195 95 13 12 chrX 154491499 154491902 -8108028 + L1P LINE L1 5017 5423 -740 545 278 0 42 chrX 154492130 154492321 -8107609 + MER51-int LTR ERV1 659 841 -6696 315 253 0 0 chrX 154492479 154492554 -8107376 + MER51-int LTR ERV1 900 974 -4149 274 203 51 25 chrX 154492694 154492773 -8107157 + MER51-int LTR ERV1 1835 1915 -4683 424 275 115 12 chrX 154493135 154493386 -8106544 - MER34 LTR ERV1 -317 327 1 558 192 57 69 chrX 154493390 154493498 -8106432 + MER51-int LTR ERV1 1735 1843 -3093 1668 70 5 5 chrX 154493498 154493713 -8106217 + L1PA13 LINE L1 5948 6162 -1 558 192 57 69 chrX 154493713 154493947 -8105983 + MER51-int LTR ERV1 1843 1953 -2983 361 272 36 45 chrX 154494134 154494451 -8105479 + MER51-int LTR ERV1 2266 3896 -2435 3313 203 65 60 chrX 154494619 154495035 -8104895 + MER51-int LTR ERV1 2879 3291 -1645 2385 73 0 0 chrX 154495035 154495323 -8104607 - L1PA6 LINE L1 0 6154 5867 3313 203 65 60 chrX 154495323 154495412 -8104518 + MER51-int LTR ERV1 3291 3378 -1558 2407 99 0 0 chrX 154495412 154495724 -8104206 - AluSx SINE Alu 0 312 1 3313 203 65 60 chrX 154495724 154496980 -8102950 + MER51-int LTR ERV1 3378 4406 -530 16190 215 31 24 chrX 154496990 154502893 -8097037 + L1PA15 LINE L1 1 5973 -843 2116 111 0 11 chrX 154502893 154503173 -8096757 + AluSg SINE Alu 1 277 -33 16190 215 31 24 chrX 154503173 154504016 -8095914 + L1PA15 LINE L1 5973 6808 -8 508 229 18 130 chrX 154504079 154504166 -8095764 + MER51-int LTR ERV1 3977 4072 -799 1578 155 33 188 chrX 154504166 154504676 -8095254 - Tigger2a DNA MER2_type 0 434 4 508 229 18 130 chrX 154504676 154504811 -8095119 + MER51-int LTR ERV1 4072 4174 -697 545 222 0 32 chrX 154504968 154505094 -8094836 + MER51-int LTR ERV1 6906 7027 -789 3024 193 26 86 chrX 154505097 154505822 -8094108 + MER54B LTR ERVL 1 682 -111 1377 222 38 7 chrX 154505871 154506164 -8093766 + MER51-int LTR ERV1 6843 7144 -393 645 197 53 0 chrX 154506164 154506296 -8093634 + LTR54B LTR ERV1 1 139 -359 1958 18 0 0 chrX 154506320 154506542 -8093388 - L1PA5 LINE L1 -172 5983 5762 1416 43 0 0 chrX 154506542 154506703 -8093227 + L1PA5 LINE L1 5987 6147 -7 22 0 0 0 chrX 154506703 154506725 -8093205 + AT_rich Low_complexity Low_complexity 1 22 0 764 204 29 4 chrX 154506732 154506911 -8093019 + LTR54 LTR ERV1 212 425 -85 311 247 59 0 chrX 154507998 154508083 -8091847 - MIR SINE MIR -81 181 92 5258 175 43 29 chrX 154508595 154509751 -8090179 - Ricksha_a DNA DNA -8 1173 1 1263 270 95 6 chrX 154509809 154510305 -8089625 - L1ME3A LINE L1 -38 6132 5593 754 219 0 0 chrX 154510912 154511072 -8088858 - L1MC3 LINE L1 -269 7516 7357 1015 145 58 188 chrX 154511072 154511454 -8088476 + L1PA13 LINE L1 1019 1531 -5256 347 103 22 7 chrX 154511454 154511511 -8088419 - Alu SINE Alu -10 291 247 1015 145 58 188 chrX 154511511 154511657 -8088273 + L1PA13 LINE L1 1531 1694 -5093 9837 158 1 9 chrX 154511657 154512908 -8087022 + L1PA13 LINE L1 4359 5593 -1221 2584 71 0 0 chrX 154512908 154513219 -8086711 + AluY SINE Alu 1 311 0 9837 158 1 9 chrX 154513219 154514432 -8085498 + L1PA13 LINE L1 5593 6814 0 358 250 17 42 chrX 154514432 154514552 -8085378 - L1MC3 LINE L1 -416 7369 7253 2010 235 18 18 chrX 154514568 154515121 -8084809 + L1MC3 LINE L1 4748 5300 -846 3733 215 58 28 chrX 154515122 154517158 -8082772 + L1MC3 LINE L1 5258 7566 -219 712 209 33 0 chrX 154517169 154517322 -8082608 + L1MC3 LINE L1 7628 7785 0 * 1149 265 72 11 chrX 154517321 154517912 -8082018 + L1MC/D LINE L1 5175 5799 -745 393 286 44 40 chrX 154518629 154518856 -8081074 + L1M4 LINE L1 4346 4573 -1573 299 237 9 0 chrX 154519414 154519528 -8080402 + (TA)n Simple_repeat Simple_repeat 2 116 0 253 330 61 0 chrX 154524892 154525007 -8074923 - L2 LINE L2 -2 3270 3149 305 330 115 25 chrX 154525892 154526097 -8073833 - MIR SINE MIR -36 226 1 184 282 169 0 chrX 154527236 154527307 -8072623 + MIR SINE MIR 161 243 -19 1932 283 42 26 chrX 154527504 154528388 -8071542 - L1M4 LINE L1 -2934 3212 2315 23 33 0 0 chrX 154528388 154528418 -8071512 + AT_rich Low_complexity Low_complexity 1 30 0 558 239 25 110 chrX 154528473 154528615 -8071315 - L1P5 LINE L1 -556 5595 5487 2092 115 0 30 chrX 154528615 154528919 -8071011 - AluSx SINE Alu -17 295 1 558 239 25 110 chrX 154528919 154529052 -8070878 - L1P5 LINE L1 -664 5487 5344 * 5683 182 19 41 chrX 154529049 154529745 -8070185 + L1PA15 LINE L1 3951 4661 -1504 3190 51 3 0 chrX 154529745 154530115 -8069815 - L1PA5 LINE L1 -6 6148 5778 5683 182 19 41 chrX 154530115 154531551 -8068379 + L1PA15 LINE L1 4661 6024 -141 2030 135 24 0 chrX 154531551 154531840 -8068090 + AluSx SINE Alu 1 296 -16 5683 182 19 41 chrX 154531840 154531979 -8067951 + L1PA15 LINE L1 6024 6165 0 964 214 41 58 chrX 154532035 154532165 -8067765 - L1MC/D LINE L1 -650 5592 5461 2214 95 13 28 chrX 154532165 154532482 -8067448 + AluSq SINE Alu 1 312 -1 964 214 41 58 chrX 154532482 154532646 -8067284 - L1MC/D LINE L1 -781 5461 5303 502 225 33 0 chrX 154532646 154532766 -8067164 + LTR54B LTR ERV1 1 124 -374 6159 149 76 51 chrX 154532820 154532908 -8067022 - HUERS-P1 LTR ERV1 -2516 4082 3998 2336 79 7 10 chrX 154532908 154533211 -8066719 + AluSc SINE Alu 1 302 -7 6159 149 76 51 chrX 154533211 154534953 -8064977 - HUERS-P1 LTR ERV1 -2600 3998 1145 514 142 33 126 chrX 154535005 154535183 -8064747 - HUERS-P1 LTR ERV1 -3994 2269 2108 294 29 0 0 chrX 154535183 154535218 -8064712 + (CA)n Simple_repeat Simple_repeat 2 36 0 2568 141 140 45 chrX 154535330 154536001 -8063929 - HUERS-P1 LTR ERV1 -5436 1162 381 838 189 12 6 chrX 154536001 154536170 -8063760 + LTR54 LTR ERV1 341 510 0 2407 252 38 27 chrX 154536198 154537088 -8062842 - L1MC/D LINE L1 -870 5276 4377 2870 258 70 41 chrX 154537139 154538398 -8061532 + L1MCb LINE L1 6 1298 -4851 917 288 37 6 chrX 154538402 154538728 -8061202 - L1MC/D LINE L1 -1796 4350 4015 339 267 37 87 chrX 154539504 154539665 -8060265 - L1MC/D LINE L1 -2926 3220 3068 450 94 0 0 chrX 154641738 154641802 -7958128 + (CGGGG)n Simple_repeat Simple_repeat 1 64 0 1419 185 3 98 chrX 154642943 154643268 -7956662 + AluJo SINE Alu 1 294 -8 833 320 86 18 chrX 154643359 154644422 -7955508 - L1M4 LINE L1 -1584 4562 3418 2337 98 0 0 chrX 154644422 154644718 -7955212 - AluSg SINE Alu -14 296 1 833 320 86 18 chrX 154644718 154644776 -7955154 - L1M4 LINE L1 -2728 3418 3365 819 117 7 29 chrX 154645267 154645404 -7954526 - L1PA16 LINE L1 0 6166 6033 1620 215 5 0 chrX 154645405 154645773 -7954157 + L1P LINE L1 4955 5324 -822 527 232 40 99 chrX 154645776 154645869 -7954061 + L2 LINE L2 3057 3154 -159 2324 151 121 7 chrX 154645869 154646332 -7953598 - LTR44 LTR ERV1 0 519 4 527 232 40 99 chrX 154646332 154646510 -7953420 + L2 LINE L2 3154 3312 -1 2180 108 16 53 chrX 154648173 154648551 -7951379 - THE1B LTR MaLR 0 364 1 389 278 113 10 chrX 154649729 154649923 -7950007 + MIR SINE MIR 49 262 0 259 266 76 0 chrX 154650517 154650596 -7949334 - MLT1I LTR MaLR -314 95 11 2437 242 38 62 chrX 154650731 154651717 -7948213 + L1MCb LINE L1 2271 3198 -3366 7786 25 5 0 chrX 154651717 154653154 -7946776 + L1PA3 LINE L1 4716 6155 0 2437 242 38 62 chrX 154653154 154653326 -7946604 + L1MCb LINE L1 3198 3373 -3191 1720 143 47 73 chrX 154653571 154653956 -7945974 + THE1C LTR MaLR 1 375 0 231 298 92 46 chrX 154654333 154654464 -7945466 + LTR16B LTR ERVL 123 259 -205 504 258 41 16 chrX 154654465 154654659 -7945271 + L1MCb LINE L1 2289 2487 -4258 2335 95 45 3 chrX 154654667 154655003 -7944927 + L1PA10 LINE L1 5710 6059 -109 751 214 220 35 chrX 154655229 154655623 -7944307 + L1MCb LINE L1 4188 4638 -1926 1638 148 4 0 chrX 154655627 154655883 -7944047 - THE1C LTR MaLR 0 375 119 1142 164 48 5 chrX 154655883 154656072 -7943858 - THE1-int LTR MaLR -745 835 639 202 189 38 0 chrX 154657603 154657656 -7942274 + MER5A DNA MER1_type 41 95 -94 1423 181 41 39 chrX 154657892 154658358 -7941572 - L1M4 LINE L1 -604 5574 5119 2092 138 6 6 chrX 154658703 154659049 -7940881 + AluSq SINE Alu 1 346 0 182 268 134 9 chrX 154659049 154659161 -7940769 - L2 LINE L2 -1914 1400 1275 3900 185 35 14 chrX 154659181 154660146 -7939784 + L1MB7 LINE L1 5171 6155 -29 1349 249 61 40 chrX 154660188 154660661 -7939269 + L1MCc LINE L1 972 1459 -4964 2285 97 62 31 chrX 154660661 154661013 -7938917 - THE1B LTR MaLR 0 364 2 1349 249 61 40 chrX 154661013 154661062 -7938868 + L1MCc LINE L1 1459 1505 -4918 1714 159 20 94 chrX 154661096 154661303 -7938627 + MER93b LTR ERV1 1 165 -208 1802 186 0 0 chrX 154661303 154661598 -7938332 - AluSx SINE Alu -17 295 1 1714 159 20 94 chrX 154661598 154661793 -7938137 + MER93b LTR ERV1 165 373 0 1338 249 72 12 chrX 154661834 154662432 -7937498 + L1MEc LINE L1 167 938 -5458 1036 273 49 84 chrX 154662451 154663205 -7936725 + L1MEc LINE L1 1261 1988 -4408 693 66 0 0 chrX 154664988 154665079 -7934851 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 3280 166 25 110 chrX 154665227 154666206 -7933724 + MER21A LTR ERV1 70 902 -29 2395 121 30 3 chrX 154666563 154666928 -7933002 - THE1C LTR MaLR 0 375 1 9044 117 81 37 chrX 154666928 154668441 -7931489 - THE1C-int LTR MaLR 0 1580 1 2480 98 21 32 chrX 154668441 154668480 -7931450 - THE1C LTR MaLR 0 375 337 2840 7 0 7 chrX 154668480 154668788 -7931142 + AluYa5 SINE Alu 1 306 -5 2480 98 21 32 chrX 154668788 154669127 -7930803 - THE1C LTR MaLR -38 337 1 1385 275 24 36 chrX 154669288 154669883 -7930047 - L1MCb LINE L1 -4852 1193 650 3866 126 24 12 chrX 154669884 154670311 -7929619 + LTR26 LTR ERV1 1 438 -165 2279 114 109 15 chrX 154670311 154670722 -7929208 - LTR7 LTR ERV1 0 450 1 3866 126 24 12 chrX 154670722 154670890 -7929040 + LTR26 LTR ERV1 438 603 0 1695 236 6 3 chrX 154671030 154671386 -7928544 - MER57A LTR ERV1 -46 357 1 1422 279 42 24 chrX 154671387 154671932 -7927998 - L1MCb LINE L1 -5490 555 1 371 147 15 0 chrX 154671991 154672059 -7927871 + LTR60 LTR ERV1 1 69 -517 261 0 0 0 chrX 154672081 154672110 -7927820 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 1236 269 15 12 chrX 154672200 154672534 -7927396 + LTR43 LTR ERV1 131 465 -137 41372 65 1 3 chrX 154672578 154677648 -7922282 + HERVK22 LTR ERVK 1776 6837 0 2702 140 93 15 chrX 154677648 154678120 -7921810 + LTR22 LTR ERVK 1 509 0 2294 207 29 4 chrX 154678685 154679206 -7920724 - L1M4 LINE L1 -937 5209 4676 1329 115 34 0 chrX 154679290 154679499 -7920431 - L1MA2 LINE L1 0 6304 6089 3501 92 2 0 chrX 154679499 154679966 -7919964 - L1MA2 LINE L1 -427 5877 5410 209 308 113 53 chrX 154780157 154780404 -7819526 - L2 LINE L2 -851 2463 2202 1237 177 33 193 chrX 154780404 154780827 -7819103 + L1MC4 LINE L1 5302 5791 -330 1533 86 10 0 chrX 154780827 154781024 -7818906 + AluSp SINE Alu 1 199 -114 427 59 0 0 chrX 154781028 154781079 -7818851 + AluSp SINE Alu 243 293 -20 1237 177 33 193 chrX 154781079 154781217 -7818713 + L1MC4 LINE L1 5428 5586 -535 * 5189 162 70 16 chrX 154781207 154782336 -7817594 + L1MC2 LINE L1 5137 6334 -10 1636 153 69 61 chrX 154782352 154782712 -7817218 + L1MB8 LINE L1 5814 6176 -2 532 286 82 37 chrX 154782845 154783192 -7816738 + L1ME LINE L1 3526 3886 -2260 27 49 0 0 chrX 154783209 154783250 -7816680 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chrX 154783316 154783345 -7816585 + AT_rich Low_complexity Low_complexity 1 29 0 550 312 8 38 chrX 154783452 154783712 -7816218 + L1ME LINE L1 5575 5825 -299 528 213 45 13 chrX 154783764 154783919 -7816011 + L1ME4a LINE L1 5959 6118 -3 412 237 106 116 chrX 154783938 154784278 -7815652 + L1ME4a LINE L1 5604 5939 -182 210 71 0 0 chrX 154784278 154784306 -7815624 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 412 237 106 116 chrX 154784306 154784455 -7815475 + L1ME4a LINE L1 5939 6088 -33 30 45 0 0 chrX 154784758 154784802 -7815128 + AT_rich Low_complexity Low_complexity 1 44 0 278 319 59 25 chrX 154785138 154785257 -7814673 + L2 LINE L2 3137 3259 -13 205 275 72 29 chrX 154786585 154786654 -7813276 + L2 LINE L2 2588 2659 -655 1586 209 34 20 chrX 154788097 154788446 -7811484 + MLT1A1 LTR MaLR 1 354 -11 2293 90 0 3 chrX 154788746 154789036 -7810894 - AluSx SINE Alu -10 302 14 5199 99 23 6 chrX 154789285 154789628 -7810302 + L1PB1 LINE L1 5427 5763 -388 204 67 0 0 chrX 154789628 154789658 -7810272 + (TA)n Simple_repeat Simple_repeat 2 31 0 5199 99 23 6 chrX 154789658 154790022 -7809908 + L1PB1 LINE L1 5763 6146 -5 3013 193 33 8 chrX 154790048 154790684 -7809246 + L1MB7 LINE L1 5532 6183 -1 450 219 30 41 chrX 154790684 154790853 -7809077 + L1MD2 LINE L1 1746 2003 -4514 1359 286 44 2 chrX 154790890 154791342 -7808588 + L1MD2 LINE L1 2603 3079 -3347 2205 129 0 0 chrX 154791342 154791645 -7808285 + AluSx SINE Alu 1 303 -9 1359 286 44 2 chrX 154791645 154791692 -7808238 + L1MD2 LINE L1 3079 3123 -3303 553 191 0 8 chrX 154791689 154791815 -7808115 + L1ME1 LINE L1 5176 5300 -846 * 245 266 0 0 chrX 154791811 154791875 -7808055 + L1MD2 LINE L1 5033 5096 -1330 * 1373 159 58 35 chrX 154791884 154792141 -7807789 + AluJo SINE Alu 36 298 -14 4953 177 62 43 chrX 154792148 154792935 -7806995 + L1MD2 LINE L1 5095 5865 -774 676 62 0 0 chrX 154792935 154793016 -7806914 - L1PA7 LINE L1 -11 6143 6063 4953 177 62 43 chrX 154793016 154793043 -7806887 + L1MD2 LINE L1 5865 5890 -749 2170 112 3 0 chrX 154793043 154793337 -7806593 + AluSg SINE Alu 1 295 -15 4953 177 62 43 chrX 154793337 154794037 -7805893 + L1MD2 LINE L1 5890 6629 -10 2814 204 57 71 chrX 154794024 154794593 -7805337 + L1ME1 LINE L1 5270 5824 -342 * 1890 149 0 0 chrX 154794593 154794868 -7805062 + AluSx SINE Alu 1 275 -37 2814 204 57 71 chrX 154794868 154795157 -7804773 + L1ME1 LINE L1 5824 6116 -50 1857 252 96 18 chrX 154795231 154795858 -7804072 + L1ME3A LINE L1 5489 6164 -6 1696 171 20 27 chrX 154795864 154796157 -7803773 + AluJo SINE Alu 1 291 -21 2296 132 32 26 chrX 154796192 154796572 -7803358 + MER4B-int LTR ERV1 6370 6751 -7 3366 102 61 50 chrX 154796578 154797155 -7802775 + MER4B LTR ERV1 1 583 -27 260 253 53 13 chrX 154797296 154797371 -7802559 - MIR SINE MIR -80 182 105 395 367 28 0 chrX 154797409 154797586 -7802344 - MIR3 SINE MIR 0 208 27 347 211 175 61 chrX 154797646 154797760 -7802170 + MIR SINE MIR 20 146 -62 1099 198 26 41 chrX 154797806 154798074 -7801856 - MER69 DNA AcHobo 0 2526 2263 1793 214 48 40 chrX 154798091 154798568 -7801362 - MER68 LTR ERV1 -54 508 28 2680 259 56 25 chrX 154798728 154799496 -7800434 - MER69 DNA AcHobo -1732 794 3 324 330 52 0 chrX 154800056 154800171 -7799759 + MIR SINE MIR 36 156 -106 212 327 51 13 chrX 154800915 154801071 -7798859 + L2 LINE L2 2922 3083 -189 207 291 0 18 chrX 154801462 154801517 -7798413 - L2 LINE L2 0 3272 3219 271 278 119 8 chrX 154801610 154801736 -7798194 + LTR16A LTR ERVL 311 450 0 932 336 50 22 chrX 154801736 154802381 -7797549 + HERV16 LTR ERVL 1 663 -4333 272 158 305 0 chrX 154802481 154802563 -7797367 + MER81 DNA DNA 1 107 -7 860 291 39 10 chrX 154802744 154803133 -7796797 + HERV16 LTR ERVL 978 1377 -3619 419 133 42 48 chrX 154803161 154803327 -7796603 + CT-rich Low_complexity Low_complexity 3 167 0 281 179 31 49 chrX 154803345 154803507 -7796423 + CT-rich Low_complexity Low_complexity 1 159 0 419 167 39 30 chrX 154803525 154803912 -7796018 + CT-rich Low_complexity Low_complexity 1 390 0 304 163 38 41 chrX 154803932 154804179 -7795751 + CT-rich Low_complexity Low_complexity 1 246 0 301 263 8 30 chrX 154804506 154804573 -7795357 + L1ME4a LINE L1 5262 5326 -820 2048 107 43 0 chrX 154804573 154804872 -7795058 + AluSp SINE Alu 1 312 -1 301 263 8 30 chrX 154804872 154804937 -7794993 + L1ME4a LINE L1 5326 5391 -755 300 309 11 0 chrX 154804954 154805048 -7794882 + L1MEd LINE L1 562 656 -5463 435 175 7 22 chrX 154805303 154805440 -7794490 + G-rich Low_complexity Low_complexity 3 137 0 235 227 6 114 chrX 154808806 154808982 -7790948 + (CCCCG)n Simple_repeat Simple_repeat 3 159 0 225 128 0 77 chrX 154809220 154809298 -7790632 + (CCCCG)n Simple_repeat Simple_repeat 5 76 0 361 227 18 80 chrX 154809482 154809645 -7790285 + C-rich Low_complexity Low_complexity 3 155 0 219 320 13 13 chrX 154809860 154810010 -7789920 + (CGTG)n Simple_repeat Simple_repeat 2 151 0 302 307 38 23 chrX 154811503 154811693 -7788237 + L1ME4a LINE L1 5688 5883 -238 2183 219 18 7 chrX 154811730 154812186 -7787744 - MLT1C LTR MaLR -6 461 1 620 339 79 23 chrX 154812191 154812708 -7787222 - L2 LINE L2 -374 2940 2395 212 338 14 0 chrX 154813743 154813817 -7786113 + MIR SINE MIR 115 189 -73 207 0 0 0 chrX 154816659 154816682 -7783248 + (T)n Simple_repeat Simple_repeat 1 23 0 7000 48 26 2 chrX 154821490 154822366 -7777564 - MER11D LTR ERVK 0 897 1 4490 95 5 9 chrX 154822793 154823437 -7776493 + MER51C LTR ERV1 1 621 -19 245 380 38 16 chrX 154823441 154823625 -7776305 - MIR SINE MIR -43 219 32 575 153 54 0 chrX 154823631 154823741 -7776189 - LTR54 LTR ERV1 -78 432 317 2079 168 89 3 chrX 154823741 154823892 -7776038 + MSTB LTR MaLR 1 137 -289 3825 64 10 0 chrX 154823892 154824392 -7775538 + LTR21A LTR ERV1 1 505 0 2079 168 89 3 chrX 154824392 154824632 -7775298 + MSTB LTR MaLR 137 426 0 8272 179 38 7 chrX 154824633 154826234 -7773696 + MSTB-int LTR MaLR 2 1651 0 2160 186 16 14 chrX 154826234 154826659 -7773271 + MSTB LTR MaLR 1 426 0 605 230 27 11 chrX 154826659 154826901 -7773029 - LTR54B LTR ERV1 -211 287 1 2336 108 0 22 chrX 154827005 154827321 -7772609 - AluSc SINE Alu 0 309 1 23 0 0 0 chrX 154827328 154827351 -7772579 + AT_rich Low_complexity Low_complexity 1 23 0 250 184 20 0 chrX 154827653 154827702 -7772228 + LTR55 LTR ERV 1 50 -498 180 250 0 0 chrX 154827720 154827768 -7772162 + T-rich Low_complexity Low_complexity 3 50 0 1918 194 72 17 chrX 154827837 154828296 -7771634 + LTR55 LTR ERV 48 531 -17 4665 241 49 26 chrX 154828301 154829665 -7770265 + HERVL68 LTR ERVL 1044 2438 -599 1904 187 69 36 chrX 154829701 154830194 -7769736 + HERVL68 LTR ERVL 2517 3025 -12 2318 211 31 20 chrX 154830194 154830744 -7769186 + MER68 LTR ERV1 1 556 -6 203 398 0 0 chrX 154830833 154830931 -7768999 - MIR SINE MIR -1 261 164 289 228 0 25 chrX 154830932 154831011 -7768919 + L1MC3 LINE L1 7709 7785 0 1933 183 23 5 chrX 154831188 154831620 -7768310 + L1MB3 LINE L1 5741 6180 -3 1909 162 7 3 chrX 154831646 154831942 -7767988 + AluJo SINE Alu 1 297 -15 384 260 19 7 chrX 154831954 154832108 -7767822 + L1MCa LINE L1 1058 1213 -5213 315 261 107 47 chrX 154832716 154832931 -7766999 + L1MD2 LINE L1 5911 6138 -221 7187 93 17 19 chrX 154832955 154834013 -7765917 + MER11C LTR ERVK 1 1056 -15 1457 276 78 16 chrX 154834065 154834822 -7765108 + L1MCa LINE L1 2595 3398 -3028 229 138 15 46 chrX 154834822 154834836 -7765094 + (TA)n Simple_repeat Simple_repeat 1 14 -49 2172 80 0 0 chrX 154834836 154835098 -7764832 + AluSg SINE Alu 30 291 -19 229 138 15 46 chrX 154835098 154835148 -7764782 + (TA)n Simple_repeat Simple_repeat 14 63 0 1946 115 0 0 chrX 154835223 154835476 -7764454 - AluSx SINE Alu -24 288 36 2209 113 0 7 chrX 154835704 154835996 -7763934 - AluSg SINE Alu -20 290 1 367 330 83 23 chrX 154837228 154837446 -7762484 + MIR SINE MIR 20 250 -12 687 193 0 0 chrX 154838511 154838625 -7761305 - L1M1 LINE L1 -6333 1232 1119 741 214 7 0 chrX 154838706 154838851 -7761079 - MER54B LTR ERVL -647 146 1 416 254 0 32 chrX 154838854 154838980 -7760950 - LTR49-int LTR ERV1 -789 7027 6906 275 262 0 0 chrX 154838960 154839021 -7760909 - MER70-int LTR ERVL -359 4664 4604 * 2031 189 38 24 chrX 154839272 154839689 -7760241 + Tigger2a DNA MER2_type 7 429 -5 1981 252 48 15 chrX 154839702 154840494 -7759436 - LTR49-int LTR ERV1 -518 4418 3357 659 245 35 22 chrX 154840484 154840674 -7759256 - LTR49-int LTR ERV1 -1114 5440 3652 * 504 283 6 111 chrX 154840675 154841056 -7758874 - LTR49-int LTR ERV1 -3791 2540 493 256 338 55 7 chrX 154841457 154841602 -7758328 - LTR49-int LTR ERV1 -4279 2052 1901 947 210 58 61 chrX 154841603 154842030 -7757900 - LTR54 LTR ERV1 0 510 19 2753 237 87 66 chrX 154842124 154843270 -7756660 - L1MCb LINE L1 -4871 1174 5 3138 60 0 2 chrX 154843327 154843741 -7756189 - L1PA7 LINE L1 -59 6095 5688 419 122 73 12 chrX 154843737 154843819 -7756111 + L1PA7 LINE L1 6059 6145 -9 * 2070 287 35 8 chrX 154844036 154844705 -7755225 + L1MD2 LINE L1 4358 5060 -1086 2466 77 0 16 chrX 154844705 154845045 -7754885 + AluSg SINE Alu 1 310 0 2070 287 35 8 chrX 154845045 154845297 -7754633 + L1MD2 LINE L1 5060 5304 -842 1334 246 120 0 chrX 154845297 154845740 -7754190 - LTR54B LTR ERV1 -2 496 1 2107 255 71 18 chrX 154845740 154846491 -7753439 + L1MD2 LINE L1 5303 6089 -153 1485 300 37 22 chrX 154846465 154847245 -7752685 + L1M4 LINE L1 2429 3220 -2926 * 1844 172 3 0 chrX 154847298 154847589 -7752341 + AluSx SINE Alu 1 292 -20 2285 125 86 11 chrX 154847782 154848223 -7751707 + MER1A DNA MER1_type 1 529 0 441 304 75 26 chrX 154849415 154849642 -7750288 + MIR SINE MIR 13 250 -12 2053 130 13 26 chrX 155053327 155053634 -7546296 - AluSx SINE Alu -9 303 1 880 153 0 7 chrX 155053634 155053771 -7546159 - AluJo SINE Alu -175 137 2 249 159 0 0 chrX 155054131 155054175 -7545755 + (TG)n Simple_repeat Simple_repeat 2 45 0 581 206 0 56 chrX 155054513 155054639 -7545291 + FLAM_A SINE Alu 1 119 -14 2283 90 0 7 chrX 155054992 155055292 -7544638 - AluY SINE Alu -13 298 1 280 271 21 0 chrX 155055599 155055695 -7544235 - MER103 DNA DNA -49 117 20 228 67 0 0 chrX 155057963 155057993 -7541937 + (T)n Simple_repeat Simple_repeat 1 30 0 227 74 93 0 chrX 155058107 155058161 -7541769 + (CAATA)n Simple_repeat Simple_repeat 2 60 0 1850 130 0 0 chrX 155058459 155058720 -7541210 + AluSx SINE Alu 48 308 -4 1559 178 29 7 chrX 155058775 155059056 -7540874 + AluJo SINE Alu 1 287 -25 22 0 0 0 chrX 155059056 155059078 -7540852 + AT_rich Low_complexity Low_complexity 1 22 0 2244 81 10 7 chrX 155059454 155059751 -7540179 - AluY SINE Alu -13 298 1 1083 156 0 23 chrX 155059756 155059929 -7540001 - AluJb SINE Alu -22 290 122 297 286 0 0 chrX 155060645 155060736 -7539194 + MIR SINE MIR 63 153 -109 320 302 47 31 chrX 155061150 155061279 -7538651 + L2 LINE L2 3139 3269 -3 306 241 124 58 chrX 155062453 155062590 -7537340 - L2 LINE L2 -5 3308 3163 646 284 66 0 chrX 155062673 155062856 -7537074 + MIR SINE MIR 30 224 -38 242 294 139 17 chrX 155062877 155063057 -7536873 - L2 LINE L2 -558 2756 2555 653 254 74 11 chrX 155063891 155064080 -7535850 + MIR SINE MIR 59 259 -3 325 325 17 17 chrX 155064818 155064935 -7534995 - L2 LINE L2 0 3272 3156 763 265 68 20 chrX 155066950 155067199 -7532731 - MIR SINE MIR 0 262 2 308 262 134 30 chrX 155067336 155067500 -7532430 - L1ME4a LINE L1 -137 6378 6198 1642 152 61 7 chrX 155068038 155068334 -7531596 - AluJb SINE Alu 0 312 1 291 320 39 0 chrX 155069474 155069652 -7530278 - L1ME4a LINE L1 -1348 5192 5008 1548 260 73 8 chrX 155070041 155070672 -7529258 - L1ME4a LINE L1 -3194 3346 2675 29 28 0 0 chrX 155070685 155070721 -7529209 + AT_rich Low_complexity Low_complexity 1 36 0 4496 71 2 5 chrX 155070721 155071310 -7528620 - L1PA6 LINE L1 -6 6148 5562 1877 243 60 56 chrX 155071316 155071460 -7528470 - L1MDa LINE L1 -3891 2649 2507 2281 84 0 0 chrX 155071460 155071745 -7528185 - AluY SINE Alu -26 285 1 1877 243 60 56 chrX 155071745 155072769 -7527161 - L1MDa LINE L1 -4033 2507 1471 2255 89 0 22 chrX 155072909 155073222 -7526708 + AluY SINE Alu 1 306 -5 593 325 16 28 chrX 155073228 155073551 -7526379 - L1MDa LINE L1 -5997 724 406 2248 163 64 14 chrX 155073594 155074029 -7525901 - MSTB2 LTR MaLR 0 457 1 259 257 98 0 chrX 155074041 155074204 -7525726 - L1MEd LINE L1 -1744 4385 4203 466 278 102 68 chrX 155074280 155075201 -7524729 - L1MEd LINE L1 -2123 4006 3029 2155 120 3 0 chrX 155075201 155075502 -7524428 - AluSx SINE Alu -10 302 1 466 278 102 68 chrX 155075502 155075833 -7524097 - L1MEd LINE L1 -3100 3029 2711 403 271 64 17 chrX 155075920 155076156 -7523774 - L1MEd LINE L1 -4914 1205 959 21 0 0 0 chrX 155076287 155076308 -7523622 + AT_rich Low_complexity Low_complexity 1 21 0 9999 58 5 83 chrX 155076311 155077796 -7522134 - SVA Other Other -17 1369 1 503 301 7 0 chrX 155077808 155077951 -7521979 - L1MEd LINE L1 -5390 729 586 317 272 112 32 chrX 155077971 155078096 -7521834 - L1MEd LINE L1 -5663 456 322 218 250 92 0 chrX 155079257 155079333 -7520597 + L2 LINE L2 3188 3270 -2 1274 107 51 0 chrX 155079531 155079747 -7520183 - L1MA8 LINE L1 -69 6222 5996 882 310 87 42 chrX 155079765 155079885 -7520045 + L2 LINE L2 2622 2735 -578 2153 132 0 3 chrX 155079885 155080196 -7519734 + AluSx SINE Alu 1 310 -2 882 310 87 42 chrX 155080196 155080726 -7519204 + L2 LINE L2 2735 3313 0 284 303 11 22 chrX 155080734 155080823 -7519107 - L2 LINE L2 -5 3267 3180 191 400 0 0 chrX 155081889 155081949 -7517981 + L3b LINE CR1 1522 1581 -2 317 316 149 30 chrX 155082271 155082439 -7517491 + MER5A DNA MER1_type 2 189 0 554 313 56 5 chrX 155082665 155082860 -7517070 + MIR SINE MIR 36 240 -22 1404 197 54 7 chrX 155083079 155083358 -7516572 - AluJo SINE Alu -20 292 1 279 280 39 61 chrX 155083988 155084174 -7515756 - MIR SINE MIR -52 210 30 594 216 46 5 chrX 155084655 155084849 -7515081 - L1ME3A LINE L1 -223 5930 5729 631 269 96 18 chrX 155085630 155086177 -7513753 - L1ME3A LINE L1 -749 5380 4945 847 277 69 6 chrX 155086300 155086766 -7513164 - L1ME3A LINE L1 -2762 3367 2873 3428 166 37 23 chrX 155086766 155087491 -7512439 - L1MB3 LINE L1 -1 6182 5448 1224 309 74 44 chrX 155087517 155088727 -7511203 - L1ME3A LINE L1 -4863 1256 11 8947 35 8 0 chrX 155089315 155091187 -7508743 - L1PA4 LINE L1 -23 6132 4246 2379 87 0 0 chrX 155091207 155091506 -7508424 - AluSg SINE Alu -11 299 1 368 303 79 30 chrX 155093261 155093426 -7506504 - MIR SINE MIR -56 206 34 628 273 46 147 chrX 155094035 155094533 -7505397 - L2 LINE L2 0 3313 2866 263 322 134 34 chrX 155094819 155094968 -7504962 + MIR SINE MIR 28 191 -71 24 53 0 0 chrX 155096184 155096222 -7503708 + AT_rich Low_complexity Low_complexity 1 38 0 209 116 0 87 chrX 155096303 155096372 -7503558 + (TTCTC)n Simple_repeat Simple_repeat 3 65 0 2057 225 97 18 chrX 155096419 155097784 -7502146 - L1MC4 LINE L1 -179 7863 6359 1641 220 78 15 chrX 155097785 155097878 -7502052 - L1ME2 LINE L1 -11 6153 6067 1278 115 8 30 chrX 155097878 155098113 -7501817 + L1MA8 LINE L1 6057 6286 -5 1641 220 78 15 chrX 155098113 155098483 -7501447 - L1ME2 LINE L1 -97 6067 5661 2228 106 10 13 chrX 155098483 155098794 -7501136 - AluSx SINE Alu -2 310 1 2869 224 40 36 chrX 155098870 155099453 -7500477 - L1ME1 LINE L1 -50 6116 5537 230 0 33 0 chrX 155099453 155099483 -7500447 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1730 128 48 11 chrX 155099487 155099760 -7500170 - AluSq SINE Alu -30 283 1 2869 224 40 36 chrX 155099760 155100012 -7499918 - L1ME1 LINE L1 -631 5535 5272 390 333 47 8 chrX 155100116 155100245 -7499685 + MIR SINE MIR 8 141 -121 2326 78 3 0 chrX 155100257 155100550 -7499380 + L1PA6 LINE L1 5861 6154 0 404 234 11 21 chrX 155100554 155100648 -7499282 - MIR SINE MIR 0 262 170 1336 237 34 11 chrX 155100650 155101030 -7498900 - L1ME1 LINE L1 -856 5290 4902 432 324 43 36 chrX 155101038 155101291 -7498639 + L2 LINE L2 2720 2974 -340 186 292 97 56 chrX 155101430 155101502 -7498428 + L2 LINE L2 3136 3210 -62 192 170 170 0 chrX 155101749 155101796 -7498134 + L2 LINE L2 49 103 -3211 234 0 0 0 chrX 155103909 155103935 -7495995 + (CA)n Simple_repeat Simple_repeat 2 27 0 290 229 121 0 chrX 155104364 155104447 -7495483 - MER58 DNA MER1_type -2326 94 2 512 79 0 0 chrX 155105605 155105681 -7494249 + L1MA2 LINE L1 6229 6304 0 480 305 43 0 chrX 155105829 155105993 -7493937 + MIR SINE MIR 35 205 -57 21 36 0 0 chrX 155106810 155106838 -7493092 + AT_rich Low_complexity Low_complexity 1 28 0 245 59 0 0 chrX 155106882 155106916 -7493014 - L1MA9 LINE L1 0 6312 6279 234 0 0 0 chrX 155107999 155108025 -7491905 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1530 165 4 0 chrX 155108029 155108271 -7491659 - AluJb SINE Alu -36 276 34 1145 159 55 15 chrX 155108483 155108684 -7491246 + MER3 DNA MER1_type 1 209 0 223 352 0 0 chrX 155108891 155108962 -7490968 - L2 LINE L2 -1 3312 3242 494 311 173 3 chrX 155109059 155109377 -7490553 - L2 LINE L2 -830 2484 2113 26 74 0 0 chrX 155109434 155109488 -7490442 + AT_rich Low_complexity Low_complexity 1 54 0 73 46 0 0 chrX 155109553 155109661 -7490269 + AT_rich Low_complexity Low_complexity 1 108 0 216 0 0 0 chrX 155110765 155110789 -7489141 + (CTG)n Simple_repeat Simple_repeat 2 25 0 555 218 23 80 chrX 155111451 155111641 -7488289 + MIR3 SINE MIR 18 193 -41 438 292 7 28 chrX 155111651 155111795 -7488135 + L2 LINE L2 3173 3313 0 1989 255 42 24 chrX 155112712 155113304 -7486626 + L1MEc LINE L1 35 637 -5759 556 240 70 60 chrX 155113811 155114011 -7485919 - MIR SINE MIR -42 220 19 2360 231 61 137 chrX 155114152 155114347 -7485583 - L2 LINE L2 -4 3309 3101 2462 84 0 3 chrX 155114347 155114657 -7485273 + AluSg SINE Alu 1 309 -1 2360 231 61 137 chrX 155114657 155115292 -7484638 - L2 LINE L2 -212 3101 2419 2334 88 3 0 chrX 155115292 155115587 -7484343 - AluSq SINE Alu -17 296 1 2360 231 61 137 chrX 155115587 155115828 -7484102 - L2 LINE L2 -894 2419 2161 1023 152 0 0 chrX 155115828 155116006 -7483924 + CT-rich Low_complexity Low_complexity 1 178 0 2360 231 61 137 chrX 155116006 155116057 -7483873 - L2 LINE L2 -1152 2161 2108 1596 218 7 7 chrX 155116057 155116365 -7483565 - AluJb SINE Alu -4 308 1 2360 231 61 137 chrX 155116365 155116863 -7483067 - L2 LINE L2 -1205 2108 1823 19055 44 5 2 chrX 155116949 155119966 -7479964 - L1PA5 LINE L1 0 6154 3132 269 289 239 7 chrX 155121070 155121212 -7478718 + MIR3 SINE MIR 11 185 -23 2518 57 0 7 chrX 155122967 155123268 -7476662 + AluY SINE Alu 1 299 -12 6709 214 153 40 chrX 155123530 155124716 -7475214 - L1MD3 LINE L1 -9 7986 6935 185 0 0 39 chrX 155124716 155124742 -7475188 + (CAA)n Simple_repeat Simple_repeat 2 26 0 6709 214 153 40 chrX 155124742 155125749 -7474181 - L1MD3 LINE L1 -1060 6935 5546 207 164 218 0 chrX 155127233 155127288 -7472642 + MIR SINE MIR 77 143 -119 440 296 172 0 chrX 155127534 155127720 -7472210 + L3 LINE CR1 1065 1282 -295 3569 56 0 9 chrX 155128127 155128147 -7471783 - L1P LINE L1 -1976 4170 4151 7614 46 6 0 chrX 155128147 155129762 -7470168 - L1PA4 LINE L1 -4 6151 4530 3569 56 0 9 chrX 155129762 155130188 -7469742 - L1P LINE L1 -1995 4151 3728 * 4057 37 0 0 chrX 155130179 155130669 -7469261 + L1P LINE L1 3203 3692 -2454 730 177 57 8 chrX 155130674 155130798 -7469132 - FLAM_A SINE Alu -3 130 1 239 121 15 45 chrX 155130904 155130970 -7468960 + (TA)n Simple_repeat Simple_repeat 1 64 0 5184 127 22 5 chrX 155131034 155131821 -7468109 - L1MA4 LINE L1 -15 6285 5486 310 279 24 101 chrX 155131865 155132162 -7467768 + L2 LINE L2 2581 2854 -460 338 256 50 33 chrX 155132305 155132426 -7467504 + MIR SINE MIR 140 262 0 258 349 72 26 chrX 155132487 155132639 -7467291 + MIR3 SINE MIR 47 205 -3 289 243 0 0 chrX 155133936 155134010 -7465920 + (CAG)n Simple_repeat Simple_repeat 3 76 0 219 235 0 0 chrX 155134031 155134129 -7465801 + GA-rich Low_complexity Low_complexity 3 100 0 221 304 0 0 chrX 155134132 155134224 -7465706 + (CAG)n Simple_repeat Simple_repeat 1 92 0 239 281 16 0 chrX 155135024 155135088 -7464842 + L2 LINE L2 3246 3310 -3 251 218 36 18 chrX 155135241 155135296 -7464634 - MER5A DNA MER1_type -87 102 47 290 318 9 27 chrX 155135305 155135415 -7464515 + MIR SINE MIR 17 124 -84 844 194 6 28 chrX 155139189 155139369 -7460561 + MLT1A2 LTR MaLR 4 179 -195 180 111 0 0 chrX 155139383 155139410 -7460520 + (CACG)n Simple_repeat Simple_repeat 3 29 0 406 281 16 8 chrX 155139410 155139531 -7460399 + MLT1A2 LTR MaLR 181 302 -88 270 319 11 0 chrX 155141639 155141730 -7458200 + MIR SINE MIR 67 158 -104 779 309 146 15 chrX 155143007 155143687 -7456243 + L2 LINE L2 1057 1825 -1489 986 237 57 4 chrX 155143706 155143725 -7456205 + MLT1B LTR MaLR 151 168 -222 180 0 0 0 chrX 155143725 155143745 -7456185 + (TC)n Simple_repeat Simple_repeat 1 20 0 986 237 57 4 chrX 155143745 155143953 -7455977 + MLT1B LTR MaLR 168 390 0 351 102 20 0 chrX 155143953 155144001 -7455929 + MLT1A2 LTR MaLR 418 466 -1 531 244 177 50 chrX 155144004 155144435 -7455495 + L2 LINE L2 2453 3044 -269 611 301 136 29 chrX 155145500 155145979 -7453951 + L1ME4a LINE L1 5295 5824 -297 304 292 93 49 chrX 155146181 155146709 -7453221 + L1ME4a LINE L1 4157 4707 -1439 446 278 97 32 chrX 155147353 155147601 -7452329 + L1ME4a LINE L1 5858 6121 0 231 293 40 0 chrX 155147667 155147742 -7452188 + L1ME4a LINE L1 5969 6046 -75 593 290 65 33 chrX 155147845 155148121 -7451809 - L2 LINE L2 -57 3256 2972 276 290 130 10 chrX 155148188 155148288 -7451642 - REP3 LTR ERV -135 427 316 1058 108 0 0 chrX 155148328 155148467 -7451463 - MLT1A1 LTR MaLR 0 365 227 594 192 8 48 chrX 155148475 155148600 -7451330 - MLT1A1 LTR MaLR -245 120 1 864 239 37 18 chrX 155148600 155148818 -7451112 - REP3 LTR ERV -294 268 47 623 276 39 6 chrX 155148831 155149012 -7450918 + L2 LINE L2 2888 3074 -239 15958 135 17 30 chrX 155149017 155150804 -7449126 + L1M1 LINE L1 17 1766 -5799 276 30 0 0 chrX 155150804 155150837 -7449093 + (GA)n Simple_repeat Simple_repeat 2 34 0 15958 135 17 30 chrX 155150837 155151521 -7448409 + L1M1 LINE L1 1766 2457 -5108 3985 262 232 23 chrX 155151577 155153716 -7446214 + L2 LINE L2 674 3299 -14 2243 170 8 14 chrX 155153717 155154109 -7445821 - MLT1B LTR MaLR 0 467 1 787 234 18 12 chrX 155154523 155154690 -7445240 - MER45A DNA AcHobo -10 168 1 210 333 103 0 chrX 155154760 155154847 -7445083 - L2 LINE L2 -10 3303 3208 476 287 79 32 chrX 155154923 155155139 -7444791 - MIR SINE MIR -17 245 20 33 73 0 0 chrX 155156684 155156752 -7443178 + GC_rich Low_complexity Low_complexity 1 68 0 530 129 0 0 chrX 155157113 155157198 -7442732 - L1MA4A LINE L1 -5 6298 6214 1162 296 174 9 chrX 155157226 155157754 -7442176 - L2 LINE L2 -1633 1681 1067 279 288 119 8 chrX 155157755 155157873 -7442057 - L2 LINE L2 -2456 858 728 228 180 20 20 chrX 155157901 155157951 -7441979 + CT-rich Low_complexity Low_complexity 2 51 0 22 35 0 0 chrX 155158165 155158194 -7441736 + AT_rich Low_complexity Low_complexity 1 29 0 320 379 64 30 chrX 155159076 155159279 -7440651 + L1MEd LINE L1 360 569 -5550 364 228 34 40 chrX 155159339 155159488 -7440442 + L1M4 LINE L1 5365 5512 -652 312 48 0 0 chrX 155159614 155159656 -7440274 + (CA)n Simple_repeat Simple_repeat 2 43 0 1279 297 185 25 chrX 155160581 155161414 -7438516 - L2 LINE L2 0 3313 2338 565 219 235 0 chrX 155161461 155161657 -7438273 + MIR SINE MIR 19 260 -2 264 308 92 15 chrX 155162208 155162338 -7437592 + MIR SINE MIR 1 140 -122 1781 169 0 10 chrX 155162689 155162991 -7436939 + AluJb SINE Alu 1 299 -13 26 0 0 0 chrX 155163079 155163105 -7436825 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chrX 155163486 155163509 -7436421 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chrX 155163648 155163685 -7436245 + AT_rich Low_complexity Low_complexity 1 37 0 9516 36 0 1 chrX 155164196 155166135 -7433795 - L1PA4 LINE L1 0 6155 4253 1143 241 80 37 chrX 155166223 155166407 -7433523 - MLT1A1 LTR MaLR -27 338 133 2197 102 0 3 chrX 155166407 155166702 -7433228 - AluSx SINE Alu -18 294 1 1143 241 80 37 chrX 155166702 155166841 -7433089 - MLT1A1 LTR MaLR -232 133 1 245 231 0 15 chrX 155166949 155167014 -7432916 + L1M4 LINE L1 5491 5554 -620 184 304 251 29 chrX 155168145 155168316 -7431614 + MIR SINE MIR 6 214 -48 * 880 280 224 4 chrX 155168284 155168793 -7431137 - L2 LINE L2 -228 3085 2469 280 307 132 18 chrX 155170248 155170362 -7429568 + MIR SINE MIR 117 243 -19 201 305 0 0 chrX 155170328 155170387 -7429543 + L2 LINE L2 3214 3272 0 * 2921 278 139 23 chrX 155170899 155172275 -7427655 - L2 LINE L2 0 3313 1745 618 215 12 6 chrX 155174326 155174498 -7425432 + CT-rich Low_complexity Low_complexity 4 176 0 1736 152 30 13 chrX 155174517 155174820 -7425110 - AluSx SINE Alu -4 308 1 285 75 0 0 chrX 155180816 155180856 -7419074 + (TG)n Simple_repeat Simple_repeat 1 40 0 354 45 0 0 chrX 155181367 155181411 -7418519 + (TG)n Simple_repeat Simple_repeat 1 44 0 530 309 58 33 chrX 155184517 155184760 -7415170 - MIR SINE MIR -1 261 13 276 321 46 9 chrX 155184836 155184945 -7414985 + L2 LINE L2 3137 3249 -23 2029 162 37 5 chrX 155184996 155185372 -7414558 - MLT1B LTR MaLR 0 390 3 506 300 101 96 chrX 155185957 155187466 -7412464 - L2 LINE L2 -55 3217 1696 384 246 82 41 chrX 155187474 155187596 -7412334 - L2 LINE L2 -2 3311 3185 253 148 49 82 chrX 155187765 155187826 -7412104 + MIR SINE MIR 111 169 -93 214 288 200 12 chrX 155189041 155189121 -7410809 + L2 LINE L2 3169 3263 -50 242 263 68 68 chrX 155189769 155189887 -7410043 - MIR3 SINE MIR -79 129 12 255 269 13 13 chrX 155190008 155190086 -7409844 + (CAGG)n Simple_repeat Simple_repeat 2 79 0 816 312 43 46 chrX 155190303 155190886 -7409044 + L1MC4a LINE L1 5314 5461 -872 620 195 86 35 chrX 155191750 155191924 -7408006 - MER53 DNA DNA -1 188 6 601 75 11 11 chrX 155192191 155192284 -7407646 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 2127 174 5 32 chrX 155192431 155192471 -7407459 - MLT2C1 LTR ERVL 0 397 357 531 45 0 0 chrX 155192471 155192537 -7407393 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2127 174 5 32 chrX 155192537 155192904 -7407026 - MLT2C1 LTR ERVL -40 357 1 441 321 42 35 chrX 155193902 155194300 -7405630 + L2 LINE L2 2633 3036 -277 200 111 28 0 chrX 155195154 155195190 -7404740 + (TG)n Simple_repeat Simple_repeat 2 38 0 2168 126 7 0 chrX 155195257 155195550 -7404380 + AluSx SINE Alu 6 300 -12 354 23 0 0 chrX 155195559 155195602 -7404328 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 303 302 8 24 chrX 155195602 155195728 -7404202 + L1M4 LINE L1 3073 3196 -2950 22 56 0 0 chrX 155196585 155196621 -7403309 + AT_rich Low_complexity Low_complexity 1 36 0 222 156 0 22 chrX 155196636 155196681 -7403249 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 316 304 0 44 chrX 155197292 155197427 -7402503 - HAL1 LINE L1 -1640 867 739 844 279 12 28 chrX 155197911 155198162 -7401768 + MIR SINE MIR 1 247 -15 227 279 0 15 chrX 155198199 155198267 -7401663 - MIR SINE MIR -194 68 2 229 247 0 72 chrX 155198299 155198396 -7401534 - L2 LINE L2 -1052 2262 2173 189 107 0 0 chrX 155199134 155199162 -7400768 + (GGCTG)n Simple_repeat Simple_repeat 5 32 0 193 258 61 15 chrX 155200951 155201017 -7398913 - MIR SINE MIR -62 146 78 190 184 46 11 chrX 155201513 155201600 -7398330 + GA-rich Low_complexity Low_complexity 1 90 0 190 208 293 0 chrX 155201639 155201745 -7398185 + MIR3 SINE MIR 15 151 -57 284 342 25 0 chrX 155206050 155206170 -7393760 - L2 LINE L2 0 3313 3191 245 323 140 34 chrX 155206189 155206625 -7393305 - L2 LINE L2 -572 2742 2261 379 273 0 0 chrX 155207323 155207411 -7392519 + MIR SINE MIR 131 218 -44 22 0 0 0 chrX 155207851 155207873 -7392057 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 155208254 155208275 -7391655 + AT_rich Low_complexity Low_complexity 1 21 0 905 180 20 0 chrX 155208480 155208680 -7391250 - L1MA4 LINE L1 -4 6296 6093 286 235 61 17 chrX 155208685 155208800 -7391130 - L1M4 LINE L1 -1942 4204 4085 1840 124 0 0 chrX 155208826 155209068 -7390862 - AluSq SINE Alu -67 246 5 241 82 41 0 chrX 155209132 155209181 -7390749 + (TA)n Simple_repeat Simple_repeat 2 52 0 476 43 57 0 chrX 155209230 155209300 -7390630 + L1PA4 LINE L1 6081 6154 -1 230 333 24 8 chrX 155209714 155209840 -7390090 - L2 LINE L2 -1 3271 3144 305 330 11 58 chrX 155210175 155210366 -7389564 - L1MCa LINE L1 -4873 1342 1161 3843 260 52 6 chrX 155210426 155211504 -7388426 - L1MCa LINE L1 -5239 1157 30 275 146 0 0 chrX 155211612 155211660 -7388270 - L2 LINE L2 -4 3309 3262 * 1830 243 101 16 chrX 155211649 155212286 -7387644 - L2 LINE L2 -703 2611 1921 234 333 0 0 chrX 155212362 155212428 -7387502 + L2 LINE L2 3207 3272 0 332 373 32 20 chrX 155213181 155213428 -7386502 + L2 LINE L2 1700 1949 -1365 300 287 60 44 chrX 155213754 155214005 -7385925 - L2 LINE L2 -686 2628 2374 250 297 36 9 chrX 155215029 155215140 -7384790 + L2 LINE L2 2622 2735 -579 230 254 66 41 chrX 155216656 155216778 -7383152 + L2 LINE L2 2926 3050 -222 196 322 24 61 chrX 155218603 155218879 -7381051 + L2 LINE L2 2719 3054 -218 575 302 130 30 chrX 155218912 155219250 -7380680 - L2 LINE L2 -2 3270 2899 390 250 86 31 chrX 155219632 155219760 -7380170 - L2 LINE L2 -1 3271 3137 831 112 0 0 chrX 155220374 155220499 -7379431 + (TA)n Simple_repeat Simple_repeat 2 126 0 1231 191 7 1 chrX 155222828 155223133 -7376797 + MER2 DNA MER2_type 3 344 -1 252 310 79 92 chrX 155223158 155223474 -7376456 + L2 LINE L2 2949 3260 -12 210 71 0 0 chrX 155223496 155223524 -7376406 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 4617 163 46 11 chrX 155223768 155224806 -7375124 - L1MB2 LINE L1 -9 6162 5099 25 0 0 0 chrX 155225568 155225593 -7374337 + AT_rich Low_complexity Low_complexity 1 25 0 402 85 0 0 chrX 155226760 155226819 -7373111 + (TG)n Simple_repeat Simple_repeat 1 59 0 27 0 0 0 chrX 155227822 155227849 -7372081 + AT_rich Low_complexity Low_complexity 1 27 0 1027 311 131 26 chrX 155227890 155228789 -7371141 + L2 LINE L2 2280 3274 -39 217 170 43 0 chrX 155232000 155232047 -7367883 + L2 LINE L2 3262 3310 -3 371 226 10 0 chrX 155233060 155233162 -7366768 + GA-rich Low_complexity Low_complexity 3 105 0 398 358 8 19 chrX 155233506 155233758 -7366172 + CT-rich Low_complexity Low_complexity 1 249 0 235 259 188 0 chrX 155234729 155234814 -7365116 + MIR3 SINE MIR 86 186 -22 373 301 98 17 chrX 155234842 155235015 -7364915 - MIR SINE MIR -44 218 32 363 309 0 0 chrX 155235508 155235602 -7364328 + L2 LINE L2 3177 3270 -2 214 305 51 25 chrX 155235632 155235750 -7364180 - L2 LINE L2 -27 3245 3125 2934 3 0 3 chrX 155236064 155236376 -7363554 + AluYa5 SINE Alu 1 311 0 194 274 81 16 chrX 155236955 155237017 -7362913 - MIR SINE MIR -37 225 160 180 167 24 0 chrX 155237051 155237093 -7362837 - MIR SINE MIR -136 72 30 279 139 0 0 chrX 155237195 155237238 -7362692 - L1MB5 LINE L1 -131 6043 6001 619 305 106 29 chrX 155237596 155238427 -7361503 - L1ME2 LINE L1 -301 5863 4939 372 286 68 17 chrX 155238822 155239000 -7360930 - MIR3 SINE MIR -66 142 1 224 281 178 22 chrX 155239569 155239704 -7360226 + L3 LINE CR1 1355 1510 -67 2558 60 0 0 chrX 155239808 155240107 -7359823 + AluY SINE Alu 1 299 -12 296 181 121 12 chrX 155240168 155240251 -7359679 - MER5C DNA MER1_type 0 324 233 489 252 8 0 chrX 155240277 155240396 -7359534 - MER5C DNA MER1_type -200 124 5 709 153 7 14 chrX 155240676 155240820 -7359110 + CT-rich Low_complexity Low_complexity 2 144 0 1400 44 0 6 chrX 155240830 155241011 -7358919 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2215 105 7 0 chrX 155240850 155241311 -7358619 - AluSx SINE Alu 0 463 1 329 257 15 81 chrX 155241708 155241844 -7358086 - L2 LINE L2 -3 3269 3143 307 229 240 10 chrX 155241895 155241991 -7357939 + L2 LINE L2 3150 3267 -5 1731 183 6 47 chrX 155242028 155242389 -7357541 + MLT2C1 LTR ERVL 5 350 -47 267 216 14 14 chrX 155242389 155242463 -7357467 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 366 315 49 0 chrX 155242579 155242722 -7357208 + L2 LINE L2 3123 3272 0 216 312 127 25 chrX 155242762 155242919 -7357011 + L2 LINE L2 2173 2345 -969 562 278 29 70 chrX 155242934 155243091 -7356839 + MIR SINE MIR 12 157 -105 342 0 0 0 chrX 155243091 155243129 -7356801 + (CAG)n Simple_repeat Simple_repeat 1 38 0 562 278 29 70 chrX 155243129 155243212 -7356718 + MIR SINE MIR 157 242 -20 976 301 116 27 chrX 155243328 155244089 -7355841 + L2 LINE L2 2476 3313 0 1494 171 0 67 chrX 155244431 155244746 -7355184 - AluJo SINE Alu -8 304 11 342 0 0 0 chrX 155245125 155245163 -7354767 + (TG)n Simple_repeat Simple_repeat 2 39 0 326 250 0 0 chrX 155245164 155245319 -7354611 + GA-rich Low_complexity Low_complexity 1 155 0 192 328 92 25 chrX 155246060 155246179 -7353751 + MIR3 SINE MIR 67 193 -15 1038 325 151 40 chrX 155246225 155246336 -7353594 + L3 LINE CR1 457 554 -1023 9299 143 32 3 chrX 155246336 155248686 -7351244 + L1PA11 LINE L1 3771 6171 -3 1038 325 151 40 chrX 155248686 155249378 -7350552 + L3 LINE CR1 554 1349 -228 186 43 0 0 chrX 155249601 155249624 -7350306 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 576 306 21 5 chrX 155253019 155253205 -7346725 - MIR3 SINE MIR -5 203 15 249 233 58 42 chrX 155253299 155253419 -7346511 + HAL1b LINE L1 1215 1336 -12 2229 124 44 6 chrX 155255702 155256064 -7343866 + MLT1B LTR MaLR 11 386 -4 331 302 71 50 chrX 155256255 155256437 -7343493 + MIR SINE MIR 21 152 -56 901 168 61 71 chrX 155256488 155256814 -7343116 - MLT1A2 LTR MaLR -3 380 5 282 256 125 62 chrX 155257541 155257701 -7342229 - MIR3 SINE MIR -27 181 12 265 277 58 58 chrX 155258049 155258204 -7341726 + MIR3 SINE MIR 1 155 -53 2145 85 0 16 chrX 155258598 155258914 -7341016 - AluY SINE Alu 0 311 1 857 295 155 32 chrX 155259061 155259667 -7340263 + L2 LINE L2 2629 3313 0 394 374 39 15 chrX 155259738 155259944 -7339986 + L2 LINE L2 3062 3272 0 182 267 293 0 chrX 155259995 155260070 -7339860 - MIR SINE MIR -67 141 45 440 280 52 52 chrX 155260465 155260676 -7339254 + MIR SINE MIR 12 222 -40 613 274 113 27 chrX 155261461 155261753 -7338177 + L2 LINE L2 2176 2492 -822 440 324 82 25 chrX 155261769 155262054 -7337876 + L2 LINE L2 2755 3055 -258 5019 173 52 21 chrX 155262108 155263184 -7336746 - L1MC3 LINE L1 -8 7777 6651 217 311 76 45 chrX 155263184 155263316 -7336614 + L2 LINE L2 3163 3298 -15 383 328 117 36 chrX 155263328 155263636 -7336294 + L2 LINE L2 2407 2739 -575 2837 209 26 62 chrX 155263647 155265106 -7334824 + L1ME2 LINE L1 4501 5904 -260 392 274 156 19 chrX 155265275 155265487 -7334443 - L1M4 LINE L1 -1262 4884 4644 334 324 98 44 chrX 155265670 155265895 -7334035 - L1M4 LINE L1 -1453 4693 4457 318 77 0 0 chrX 155266144 155266183 -7333747 + MER3 DNA MER1_type 36 74 -135 347 343 30 47 chrX 155269999 155270323 -7329607 + L2 LINE L2 2772 3092 -180 310 265 149 17 chrX 155270684 155270865 -7329065 - MIR SINE MIR -46 216 12 752 307 17 25 chrX 155270897 155271138 -7328792 - MIR SINE MIR -10 252 14 390 314 96 17 chrX 155271606 155271845 -7328085 + MIR SINE MIR 1 258 -4 600 332 111 26 chrX 155272445 155273048 -7326882 + L2 LINE L2 2078 2731 -583 473 263 116 39 chrX 155273059 155273318 -7326612 + HAL1b LINE L1 1070 1348 0 197 324 59 50 chrX 155273349 155273571 -7326359 + L2 LINE L2 2738 2961 -353 264 340 87 52 chrX 155274677 155275045 -7324885 + L2 LINE L2 2888 3268 -4 493 359 37 16 chrX 155275106 155275641 -7324289 + L2 LINE L2 2479 3047 -225 274 276 8 104 chrX 155276011 155276145 -7323785 - L2 LINE L2 -10 3303 3183 203 208 42 0 chrX 155276199 155276247 -7323683 + GA-rich Low_complexity Low_complexity 2 51 0 731 235 81 95 chrX 155277943 155278300 -7321630 - L2 LINE L2 -5 3267 2916 3612 150 314 45 chrX 155278300 155279289 -7320641 - MER52C LTR ERV1 -11 1267 12 421 281 169 6 chrX 155279321 155279499 -7320431 - L2 LINE L2 -481 2833 2627 1412 184 53 162 chrX 155279499 155280142 -7319788 + LTR41 LTR ERVL 7 579 -194 1340 228 42 69 chrX 155280200 155280850 -7319080 - L1MC5 LINE L1 -54 7907 7276 451 249 65 50 chrX 155280989 155281292 -7318638 - L1MC5 LINE L1 -735 7226 6933 4285 114 18 61 chrX 155281404 155282175 -7317755 - L1MA7 LINE L1 -9 6282 5545 331 190 66 117 chrX 155282183 155282320 -7317610 + LTR41 LTR ERVL 584 713 -60 347 245 38 9 chrX 155282323 155282429 -7317501 - L1MB8 LINE L1 -6 6172 6064 229 120 0 100 chrX 155282447 155282497 -7317433 - MSTB1 LTR MaLR -275 157 113 256 138 259 0 chrX 155282498 155282556 -7317374 - L1MB8 LINE L1 -227 5957 5885 517 189 38 8 chrX 155282556 155282688 -7317242 - L1MB2 LINE L1 -1 6170 6035 354 147 13 53 chrX 155282689 155282764 -7317166 + LTR41 LTR ERVL 696 767 -6 450 246 164 10 chrX 155282776 155282971 -7316959 - L2 LINE L2 -695 2619 2395 201 105 158 0 chrX 155282989 155283027 -7316903 + L3 LINE CR1 654 697 -880 572 278 11 17 chrX 155283074 155283250 -7316680 + MER5B DNA MER1_type 1 175 -3 329 327 58 54 chrX 155283433 155283489 -7316441 - MIR SINE MIR -18 244 190 1687 195 50 16 chrX 155283489 155283530 -7316400 - MLT2C1 LTR ERVL 0 397 359 459 0 0 0 chrX 155283530 155283581 -7316349 + (TG)n Simple_repeat Simple_repeat 2 52 0 1687 195 50 16 chrX 155283581 155283923 -7316007 - MLT2C1 LTR ERVL -38 359 1 329 327 58 54 chrX 155283923 155284071 -7315859 - MIR SINE MIR -72 190 39 257 347 89 16 chrX 155285050 155285174 -7314756 - L2 LINE L2 -1 3271 3139 1055 221 0 14 chrX 155285300 155285508 -7314422 + MER63A DNA MER1_type 1 205 -5 198 329 73 0 chrX 155285677 155285759 -7314171 - L2 LINE L2 -557 2757 2670 600 264 89 32 chrX 155286381 155286695 -7313235 - L1ME4a LINE L1 -81 6040 5709 248 250 14 0 chrX 155488293 155488365 -7111565 - MIR SINE MIR -58 150 78 210 128 0 106 chrX 155490823 155490870 -7109060 - L3b LINE CR1 -4 1579 1538 283 259 37 12 chrX 155490881 155490962 -7108968 - MIR SINE MIR -93 115 33 7733 28 1 0 chrX 155491029 155492619 -7107311 + L1PA3 LINE L1 4581 6172 0 5225 209 38 22 chrX 155492619 155494724 -7105206 + L1MDa LINE L1 1425 3560 -2980 1375 114 9 9 chrX 155494724 155494943 -7104987 + L1MA4A LINE L1 6076 6294 -9 213 93 10 113 chrX 155494944 155495041 -7104889 + (TTATA)n Simple_repeat Simple_repeat 5 91 0 207 274 38 38 chrX 155495622 155495728 -7104202 - MIR SINE MIR -152 110 5 235 354 105 13 chrX 155496928 155497157 -7102773 + L2 LINE L2 2804 3053 -219 463 241 48 43 chrX 155497377 155497564 -7102366 + MIR SINE MIR 75 262 0 285 220 6 170 chrX 155497769 155497951 -7101979 + L1MD2 LINE L1 174 325 -6215 1325 155 37 11 chrX 155498054 155498325 -7101605 + L1MD2 LINE L1 2144 2421 -4119 755 269 26 4 chrX 155498332 155498559 -7101371 + L1MD2 LINE L1 2586 2817 -3723 2689 43 0 16 chrX 155498559 155498882 -7101048 + AluYb8 SINE Alu 1 318 0 1361 94 0 0 chrX 155498883 155499054 -7100876 + AluSg/x SINE Alu 135 305 -7 2873 237 65 21 chrX 155499056 155500049 -7099881 + L1MD2 LINE L1 2809 3998 -2542 2010 143 0 17 chrX 155500049 155500349 -7099581 + AluSx SINE Alu 1 295 -17 2873 237 65 21 chrX 155500349 155500741 -7099189 + L1MD2 LINE L1 3998 4371 -2169 830 160 55 46 chrX 155500744 155500935 -7098995 + MLT1B LTR MaLR 1 178 -196 347 190 0 0 chrX 155500947 155501005 -7098925 + MLT1B LTR MaLR 330 387 -3 4682 214 45 44 chrX 155501013 155503239 -7096691 + L1MD2 LINE L1 4394 6628 -8 669 285 4 37 chrX 155503270 155503516 -7096414 + MIR SINE MIR 13 250 -12 276 207 23 23 chrX 155504927 155505014 -7094916 - L1MC5 LINE L1 -231 7730 7644 4108 244 29 21 chrX 155505223 155506655 -7093275 + L1MD2 LINE L1 4036 5474 -745 1373 192 45 17 chrX 155506682 155506969 -7092961 - MLT2B1 LTR ERVL -222 298 4 1176 199 28 29 chrX 155507003 155507310 -7092620 + MER93b LTR ERV1 66 347 -26 1958 187 21 44 chrX 155507315 155507743 -7092187 + L1MD2 LINE L1 5474 5891 -351 1866 204 58 3 chrX 155507744 155508107 -7091823 + MLT2B1 LTR ERVL 28 410 -110 345 47 0 0 chrX 155508119 155508162 -7091768 + (CA)n Simple_repeat Simple_repeat 2 44 0 1318 195 84 14 chrX 155508168 155508465 -7091465 - MER2 DNA MER2_type -24 321 4 260 133 44 0 chrX 155508466 155508511 -7091419 + MLT2B1 LTR ERVL 474 520 0 312 197 0 28 chrX 155508511 155508582 -7091348 + L1MD2 LINE L1 6142 6210 -149 * 2420 169 31 74 chrX 155508554 155509255 -7090675 - L1MD3 LINE L1 -762 7199 6542 1789 199 17 8 chrX 155509590 155509952 -7089978 + MLT1A1 LTR MaLR 1 365 0 465 304 42 30 chrX 155510016 155510184 -7089746 + L2 LINE L2 3102 3271 -1 488 239 14 7 chrX 155512433 155512571 -7087359 - MIR SINE MIR -5 257 119 1272 140 38 9 chrX 155512583 155512931 -7086999 + L1MD1 LINE L1 5720 6242 0 397 161 12 12 chrX 155513006 155513087 -7086843 + MIR SINE MIR 100 180 -82 233 330 36 18 chrX 155513182 155513294 -7086636 + MIR SINE MIR 40 153 -55 25 31 0 0 chrX 155513476 155513508 -7086422 + AT_rich Low_complexity Low_complexity 1 32 0 1193 231 76 33 chrX 155513560 155514010 -7085920 - HAL1 LINE L1 -109 2398 1930 2385 241 83 29 chrX 155514018 155514781 -7085149 - HAL1 LINE L1 -698 1809 998 2661 145 4 24 chrX 155514781 155515235 -7084695 - L1MC1 LINE L1 0 6333 5889 2385 241 83 29 chrX 155515235 155515273 -7084657 - HAL1 LINE L1 -1509 998 964 771 196 14 0 chrX 155515273 155515416 -7084514 - MLT1D LTR MaLR -50 455 311 1454 287 106 47 chrX 155515430 155516346 -7083584 - HAL1 LINE L1 -1537 970 1 383 259 28 19 chrX 155517172 155517280 -7082650 - MER117 DNA MER1_type 0 197 89 1626 186 18 7 chrX 155518467 155518752 -7081178 + AluJo SINE Alu 11 298 -14 194 371 52 0 chrX 155519567 155519664 -7080266 + MIR SINE MIR 48 149 -113 269 176 216 0 chrX 155519865 155519939 -7079991 + MER96 DNA MER1_type? 8 97 -78 380 270 40 23 chrX 155520146 155520320 -7079610 + MIR3 SINE MIR 17 193 -15 246 247 39 0 chrX 155520917 155520994 -7078936 - MIR SINE MIR -113 149 70 212 300 0 0 chrX 155521379 155521429 -7078501 + L2 LINE L2 3205 3254 -18 1347 270 42 16 chrX 155521478 155521908 -7078022 - L1ME LINE L1 -5625 445 5 2192 145 118 39 chrX 155522636 155523104 -7076826 - MLT1D LTR MaLR 0 505 1 1454 197 46 38 chrX 155523142 155523344 -7076586 - MLT1A2 LTR MaLR 0 374 166 261 0 0 0 chrX 155523344 155523373 -7076557 + (GA)n Simple_repeat Simple_repeat 2 30 0 1454 197 46 38 chrX 155523373 155523541 -7076389 - MLT1A2 LTR MaLR -208 166 1 1237 246 115 19 chrX 155525366 155525785 -7074145 + MLT1C LTR MaLR 1 459 -8 2271 95 0 0 chrX 155527302 155527609 -7072321 + AluSg SINE Alu 1 307 0 306 305 38 0 chrX 155527666 155527771 -7072159 + MIR SINE MIR 33 141 -67 1464 237 92 39 chrX 155527866 155528334 -7071596 - MLT1D LTR MaLR 0 505 13 208 237 0 0 chrX 155528662 155528700 -7071230 + (TG)n Simple_repeat Simple_repeat 1 38 0 357 130 0 0 chrX 155529295 155529349 -7070581 - L1PB4 LINE L1 -177 5979 5926 672 196 60 0 chrX 155529349 155529482 -7070448 + L1PB4 LINE L1 6002 6142 -14 1541 149 216 46 chrX 155529495 155529883 -7070047 + MLT2C2 LTR ERVL 11 464 0 550 277 13 30 chrX 155530252 155530452 -7069478 - MIR SINE MIR -40 168 7 213 220 20 0 chrX 155531286 155531336 -7068594 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 912 188 85 27 chrX 155531587 155531807 -7068123 + MLT1D LTR MaLR 2 234 -271 1977 169 11 6 chrX 155531807 155532156 -7067774 - MLT1A1 LTR MaLR 0 365 15 1208 167 48 0 chrX 155532169 155532379 -7067551 + MLT1D LTR MaLR 286 505 0 553 152 50 10 chrX 155532542 155532641 -7067289 + FAM SINE Alu 77 179 -6 186 103 0 0 chrX 155533358 155533387 -7066543 + (TG)n Simple_repeat Simple_repeat 1 29 0 301 214 0 0 chrX 155534238 155534308 -7065622 + MIR SINE MIR 88 157 -105 370 257 190 14 chrX 155534893 155535040 -7064890 + MIR SINE MIR 32 196 -59 6196 214 87 29 chrX 155535054 155537020 -7062910 + L1MDa LINE L1 34 2255 -4285 236 304 39 20 chrX 155537178 155537280 -7062650 - L2 LINE L2 -33 3239 3136 1804 145 139 26 chrX 155537305 155537649 -7062281 + MLT1B LTR MaLR 8 390 0 295 227 87 8 chrX 155537649 155537776 -7062154 + L1ME4a LINE L1 5689 5850 -271 705 289 47 55 chrX 155537946 155538263 -7061667 + LTR16C LTR ERVL 107 422 -69 2228 185 15 5 chrX 155538263 155538673 -7061257 - MLT2D LTR ERVL 0 414 1 705 289 47 55 chrX 155538673 155538735 -7061195 + LTR16C LTR ERVL 422 483 -8 450 211 76 41 chrX 155538761 155538932 -7060998 + L1ME4a LINE L1 5940 6116 -5 208 65 22 65 chrX 155539383 155539429 -7060501 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 348 135 0 0 chrX 155539621 155539695 -7060235 + (TC)n Simple_repeat Simple_repeat 1 74 0 979 300 57 10 chrX 155540305 155540692 -7059238 + LTR16B LTR ERVL 1 405 -59 2201 78 7 23 chrX 155540707 155541015 -7058915 + AluSc SINE Alu 7 309 0 247 224 10 10 chrX 155541511 155541609 -7058321 + (CCA)n Simple_repeat Simple_repeat 2 99 0 409 221 74 16 chrX 155543171 155543293 -7056637 + MIR SINE MIR 64 192 -70 434 246 108 0 chrX 155544369 155544499 -7055431 - MER103 DNA DNA -2 164 21 384 284 18 37 chrX 155544580 155544717 -7055213 + MIR SINE MIR 1 133 -75 356 285 66 7 chrX 155544766 155544903 -7055027 + MIR3 SINE MIR 24 168 -40 2211 108 0 0 chrX 155545058 155545355 -7054575 - AluSg SINE Alu -13 297 1 2995 158 7 4 chrX 155545473 155545935 -7053995 + MLT1C LTR MaLR 3 465 -2 314 299 62 21 chrX 155546127 155546321 -7053609 + L1ME4a LINE L1 5589 5790 -331 467 321 104 28 chrX 155546337 155546586 -7053344 - LTR16C LTR ERVL 0 491 224 506 268 117 31 chrX 155546751 155547042 -7052888 + L1ME4a LINE L1 5803 6118 -3 286 197 30 0 chrX 155547050 155547116 -7052814 - MER5A DNA MER1_type -1 188 121 984 183 17 6 chrX 155547118 155547293 -7052637 + MER45A DNA AcHobo 2 178 0 591 219 16 8 chrX 155547293 155547416 -7052514 - MER5A DNA MER1_type -62 127 4 268 284 165 18 chrX 155547656 155547765 -7052165 + MIR SINE MIR 49 173 -89 184 171 0 49 chrX 155547849 155547890 -7052040 + L2 LINE L2 3141 3179 -93 210 368 40 8 chrX 155547932 155548057 -7051873 + L3 LINE CR1 1299 1427 -150 209 361 25 33 chrX 155548606 155548728 -7051202 + MIR SINE MIR 16 136 -72 317 304 0 48 chrX 155549188 155549313 -7050617 + MIR SINE MIR 126 244 -18 2449 163 107 7 chrX 155549328 155549787 -7050143 - MLT1D LTR MaLR 0 505 1 253 263 13 99 chrX 155549881 155550033 -7049897 + L2 LINE L2 3161 3299 -14 219 167 42 0 chrX 155550164 155550212 -7049718 - MIR SINE MIR -74 134 85 293 312 0 0 chrX 155550714 155550791 -7049139 + (CA)n Simple_repeat Simple_repeat 1 77 0 512 232 6 0 chrX 155551293 155551424 -7048506 + (TG)n Simple_repeat Simple_repeat 2 136 -30 1988 157 38 24 chrX 155551424 155551793 -7048137 - MLT1A2 LTR MaLR 0 374 1 512 232 6 0 chrX 155551793 155551825 -7048105 + (TG)n Simple_repeat Simple_repeat 136 166 0 201 129 0 0 chrX 155553593 155553624 -7046306 + (CACCC)n Simple_repeat Simple_repeat 1 31 0 194 250 0 0 chrX 155554275 155554327 -7045603 + MIR SINE MIR 114 165 -97 512 218 8 0 chrX 155555061 155555194 -7044736 + CT-rich Low_complexity Low_complexity 1 134 0 185 343 44 15 chrX 155556532 155556669 -7043261 + MIR SINE MIR 79 219 -43 244 212 0 61 chrX 155557004 155557070 -7042860 + MIR SINE MIR 86 147 -61 196 291 103 51 chrX 155557476 155557593 -7042337 + MIR3 SINE MIR 3 125 -83 335 244 0 17 chrX 155558359 155558467 -7041463 + GA-rich Low_complexity Low_complexity 4 111 -9 2382 58 7 0 chrX 155558467 155558762 -7041168 - AluY SINE Alu -14 297 1 273 253 13 13 chrX 155559063 155559138 -7040792 - MIR3 SINE MIR -25 183 109 495 294 92 0 chrX 155559744 155559897 -7040033 + MIR SINE MIR 26 192 -70 232 211 35 0 chrX 155559897 155559954 -7039976 + MLT2C2 LTR ERVL 1 59 -405 335 331 162 0 chrX 155560144 155560286 -7039644 - MER5A DNA MER1_type -13 176 12 268 250 31 42 chrX 155560303 155560399 -7039531 - L3 LINE CR1 -83 1494 1400 304 245 0 75 chrX 155560456 155560550 -7039380 + MIR3 SINE MIR 73 159 -49 403 277 36 0 chrX 155560622 155560759 -7039171 - MER103 DNA DNA -12 154 13 256 314 34 81 chrX 155562384 155562620 -7037310 + L2 LINE L2 2962 3186 -86 267 386 37 19 chrX 155562638 155562853 -7037077 - LTR16C LTR ERVL -17 474 256 311 389 0 7 chrX 155563362 155563511 -7036419 - ERVL LTR ERVL -4856 908 761 631 340 40 13 chrX 155563520 155563823 -7036107 - ERVL LTR ERVL -4375 621 311 289 252 46 46 chrX 155564094 155564225 -7035705 - LTR16A1 LTR ERVL -12 445 315 251 340 2 0 chrX 155566687 155566777 -7033153 - MIR SINE MIR -80 128 36 820 263 37 21 chrX 155567031 155567274 -7032656 - MIR SINE MIR -11 251 5 191 309 73 0 chrX 155567408 155567476 -7032454 + L2 LINE L2 3180 3252 -20 2203 199 12 22 chrX 155567949 155568366 -7031564 + MLT1C-int LTR MaLR 959 1371 0 409 103 15 29 chrX 155568366 155568434 -7031496 + MLT1C LTR MaLR 1 67 -323 1855 156 131 18 chrX 155568445 155568835 -7031095 + MLT1C LTR MaLR 29 462 -5 305 337 77 45 chrX 155568902 155569148 -7030782 - L2 LINE L2 -530 2784 2531 571 245 245 0 chrX 155569148 155569336 -7030594 - MIR SINE MIR -4 258 25 560 218 172 46 chrX 155569339 155569513 -7030417 + MER63A DNA MER1_type 1 196 -14 433 272 207 18 chrX 155569616 155569785 -7030145 + MIR SINE MIR 39 239 -23 219 295 26 0 chrX 155570978 155571056 -7028874 - MIR SINE MIR -77 185 106 288 317 64 43 chrX 155571712 155571821 -7028109 - L2 LINE L2 -172 3100 2995 761 196 0 0 chrX 155571821 155571954 -7027976 - FLAM_C SINE Alu 0 133 1 288 317 64 43 chrX 155571954 155572220 -7027710 - L2 LINE L2 -277 2995 2722 374 290 90 21 chrX 155572652 155572797 -7027133 + MIR SINE MIR 6 160 -102 1497 260 138 22 chrX 155573308 155574219 -7025711 - L2 LINE L2 -10 3303 2283 377 108 0 15 chrX 155575818 155575883 -7024047 + (TCTCC)n Simple_repeat Simple_repeat 1 64 0 241 222 61 20 chrX 155575891 155575990 -7023940 + (TCTCTG)n Simple_repeat Simple_repeat 2 104 0 21 57 0 0 chrX 155576138 155576173 -7023757 + GC_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chrX 155576777 155576814 -7023116 + GC_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chrX 155576873 155576898 -7023032 + GC_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chrX 155578253 155578283 -7021647 + GC_rich Low_complexity Low_complexity 1 30 0 7807 26 0 1 chrX 155580969 155582542 -7017388 - L1PA5 LINE L1 -3 6151 4581 300 266 217 7 chrX 155582609 155582752 -7017178 + MIR3 SINE MIR 33 205 -3 391 247 65 26 chrX 155585267 155585421 -7014509 - MIR3 SINE MIR -18 190 31 303 113 0 0 chrX 155586877 155586930 -7013000 + (CA)n Simple_repeat Simple_repeat 1 53 0 243 305 16 62 chrX 155587696 155587824 -7012106 + MIR SINE MIR 71 192 -70 256 265 0 0 chrX 155588564 155588632 -7011298 - MIR SINE MIR -66 142 75 495 330 16 11 chrX 155589389 155589574 -7010356 + MIR3 SINE MIR 16 201 -7 191 354 24 47 chrX 155589803 155589930 -7010000 - MIR SINE MIR -60 148 25 458 247 35 18 chrX 155590584 155590754 -7009176 + MIR3 SINE MIR 7 179 -29 320 277 15 15 chrX 155591083 155591220 -7008710 - L1MD3 LINE L1 0 7995 7859 360 0 0 0 chrX 155591226 155591266 -7008664 + (CA)n Simple_repeat Simple_repeat 1 40 0 392 253 0 0 chrX 155591267 155591346 -7008584 - L1MC4 LINE L1 -142 7900 7822 9286 213 50 53 chrX 155591363 155594139 -7005791 - L1MC4a LINE L1 -95 7713 4942 443 193 11 0 chrX 155594148 155594236 -7005694 - AluJo SINE Alu -1 311 223 831 158 0 53 chrX 155594254 155594406 -7005524 - AluJo SINE Alu -164 148 5 433 305 20 5 chrX 155594431 155594628 -7005302 - L1MC4a LINE L1 -1214 4932 4733 * 2805 196 61 36 chrX 155594621 155596046 -7003884 - L1MD2 LINE L1 -2 6751 4884 21 36 0 0 chrX 155596171 155596199 -7003731 + AT_rich Low_complexity Low_complexity 1 28 0 2865 10 0 0 chrX 155596301 155596612 -7003318 - AluY SINE Alu 0 311 1 248 168 35 0 chrX 155596831 155596901 -7003029 - L1PA10 LINE L1 0 6172 6102 * 259 288 8 16 chrX 155596879 155597004 -7002926 - L1MD2 LINE L1 -1656 4884 4761 5235 169 9 8 chrX 155597005 155598196 -7001734 - L1MB7 LINE L1 -11 6173 4981 2645 141 40 25 chrX 155598209 155598686 -7001244 - L1MA9 LINE L1 -31 6281 5798 333 0 0 0 chrX 155598686 155598723 -7001207 + (CA)n Simple_repeat Simple_repeat 2 38 0 10796 118 14 9 chrX 155598724 155600300 -6999630 - Tigger2 DNA MER2_type -1 2717 1134 21 57 0 0 chrX 155600343 155600378 -6999552 + AT_rich Low_complexity Low_complexity 1 35 0 662 146 0 0 chrX 155600802 155600898 -6999032 - Tigger2 DNA MER2_type -1585 1133 1038 803 203 59 7 chrX 155600901 155601054 -6998876 - MER8 DNA MER2_type -78 161 1 2233 238 32 12 chrX 155601058 155601659 -6998271 - L1MB7 LINE L1 -2115 4031 3419 * 4926 228 48 31 chrX 155601655 155602463 -6997467 - L1MD2 LINE L1 -2389 4151 3305 2098 127 3 3 chrX 155602463 155602755 -6997175 - AluSx SINE Alu -20 292 1 4926 228 48 31 chrX 155602755 155603436 -6996494 - L1MD2 LINE L1 -3235 3305 2637 1032 181 16 0 chrX 155603476 155603658 -6996272 - AluJo SINE Alu -11 301 117 5606 225 39 13 chrX 155603658 155604765 -6995165 - L1MD2 LINE L1 -3948 2592 1432 234 81 0 0 chrX 155604765 155604802 -6995128 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5606 225 39 13 chrX 155604802 155605256 -6994674 - L1MD2 LINE L1 -5108 1432 991 286 260 186 94 chrX 155605641 155606184 -6993746 - L1MD2 LINE L1 -5671 869 277 10467 197 41 14 chrX 155606202 155609387 -6990543 - L1MC1 LINE L1 -17 6316 3014 1720 163 6 45 chrX 155609387 155609700 -6990230 - AluJo SINE Alu -6 306 6 10467 197 41 14 chrX 155609700 155610111 -6989819 - L1MC1 LINE L1 -3319 3014 2616 560 263 42 28 chrX 155610160 155610377 -6989553 - L1MD2 LINE L1 -6245 295 76 712 128 18 0 chrX 155610402 155610511 -6989419 - L1MB2 LINE L1 -3 6168 6058 467 282 49 49 chrX 155610624 155610977 -6988953 - L1M4 LINE L1 -1487 4659 4303 489 314 22 35 chrX 155611222 155611451 -6988479 - L3 LINE CR1 -7 1570 1345 1362 62 0 0 chrX 155611638 155611815 -6988115 + (GAA)n Simple_repeat Simple_repeat 3 179 0 194 386 14 55 chrX 155612241 155612386 -6987544 + L2 LINE L2 2955 3093 -179 * 306 241 0 51 chrX 155612355 155612434 -6987496 - L2 LINE L2 -6 3266 3192 320 325 63 29 chrX 155612434 155612640 -6987290 - L2 LINE L2 -533 2781 2569 2093 183 45 43 chrX 155612806 155613271 -6986659 + MLT1C LTR MaLR 2 467 0 7513 30 0 0 chrX 155613749 155614615 -6985315 - L1PA2 LINE L1 -1876 4270 3405 9976 27 1 0 chrX 155614615 155616494 -6983436 + L1PA2 LINE L1 4276 6155 0 190 276 0 112 chrX 155618441 155618557 -6981373 + MIR SINE MIR 21 123 -85 942 344 118 28 chrX 155618670 155619356 -6980574 - L3 LINE CR1 -585 992 245 252 0 0 0 chrX 155619455 155619483 -6980447 + (T)n Simple_repeat Simple_repeat 1 28 0 1566 180 0 37 chrX 155620486 155620780 -6979150 + AluJb SINE Alu 1 283 -29 213 65 0 0 chrX 155620783 155620814 -6979116 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chrX 155621549 155621571 -6978359 + AT_rich Low_complexity Low_complexity 1 22 0 1503 116 65 0 chrX 155622418 155622634 -6977296 + MER30 DNA MER1_type 1 230 0 902 264 31 24 chrX 155622654 155622908 -6977022 + MIR SINE MIR 2 257 -5 183 292 28 28 chrX 155623066 155623138 -6976792 + L2 LINE L2 3239 3310 -3 266 241 42 96 chrX 155623277 155623443 -6976487 + MIR3 SINE MIR 23 179 -29 800 230 33 47 chrX 155625288 155625501 -6974429 + MER63A DNA MER1_type 1 210 0 716 237 68 6 chrX 155625673 155625850 -6974080 - MIR SINE MIR -29 233 46 1963 166 101 44 chrX 155625982 155626439 -6973491 + Charlie4a DNA MER1_type 1 483 -25 556 295 44 6 chrX 155627201 155627384 -6972546 + MIR SINE MIR 59 248 -14 225 263 0 53 chrX 155627577 155627653 -6972277 - MIR3 SINE MIR -136 72 1 2439 211 55 23 chrX 155628376 155628978 -6970952 + L1ME1 LINE L1 5541 6161 -5 998 75 5 43 chrX 155629418 155629514 -6970416 + (TTTC)n Simple_repeat Simple_repeat 1 271 0 998 75 5 43 chrX 155629514 155629700 -6970230 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 807 188 0 7 chrX 155629712 155629850 -6970080 - FRAM SINE Alu -39 137 1 1903 218 16 8 chrX 155630033 155630419 -6969511 - L1MB5 LINE L1 -9 6165 5777 7902 22 1 0 chrX 155630424 155631325 -6968605 - L1PA3 LINE L1 0 6155 5254 28796 37 38 2 chrX 155631341 155634866 -6965064 - L1PA3 LINE L1 -2483 3663 12 208 337 35 0 chrX 155635432 155635518 -6964412 - MIR3 SINE MIR -25 183 95 347 231 70 140 chrX 155635711 155635843 -6964087 + MIR3 SINE MIR 30 147 -61 1959 125 0 28 chrX 155635843 155636131 -6963799 - AluSx SINE Alu -32 280 1 347 231 70 140 chrX 155636131 155636184 -6963746 + MIR3 SINE MIR 147 202 -6 277 260 292 10 chrX 155636398 155636494 -6963436 - MIR SINE MIR -62 146 24 360 0 0 0 chrX 155636763 155636803 -6963127 + (TG)n Simple_repeat Simple_repeat 1 40 0 303 28 0 0 chrX 155637021 155637057 -6962873 + (GA)n Simple_repeat Simple_repeat 2 37 0 3731 155 42 12 chrX 155638141 155638785 -6961145 - L1MB8 LINE L1 -9 6169 5507 297 298 175 12 chrX 155639058 155639229 -6960701 - L2 LINE L2 -4 3268 3070 207 337 11 11 chrX 155639246 155639335 -6960595 + MIR SINE MIR 156 244 -18 221 339 25 59 chrX 155639367 155639485 -6960445 - MIR SINE MIR -120 142 29 2306 151 136 19 chrX 155640289 155640707 -6959223 - MLT1C LTR MaLR 0 467 1 550 243 28 0 chrX 155642844 155642988 -6956942 - L1MD2 LINE L1 -16 6343 6196 24 0 0 0 chrX 155642996 155643020 -6956910 + AT_rich Low_complexity Low_complexity 1 24 0 4321 181 58 59 chrX 155643041 155643418 -6956512 - L1MC/D LINE L1 -539 6097 5721 1938 105 41 0 chrX 155643418 155643685 -6956245 - AluSx SINE Alu 0 312 35 4321 181 58 59 chrX 155643685 155644815 -6955115 - L1MC/D LINE L1 -915 5721 4552 * 18261 206 16 16 chrX 155644803 155648636 -6951294 - L1PA15 LINE L1 -1 6815 2972 2299 105 0 3 chrX 155648636 155648932 -6950998 + AluSg1 SINE Alu 1 295 -14 18261 206 16 16 chrX 155648932 155650737 -6949193 - L1PA15 LINE L1 -3844 2972 1169 1301 233 37 0 chrX 155650737 155651037 -6948893 - L1MC/D LINE L1 -1952 4588 4278 3891 169 35 11 chrX 155651037 155651777 -6948153 - L1MD1 LINE L1 -11 6231 5474 4688 184 37 10 chrX 155651796 155653054 -6946876 - L1MB5 LINE L1 -54 6120 4819 2042 108 3 42 chrX 155653054 155653360 -6946570 + AluSx SINE Alu 1 294 -18 4688 184 37 10 chrX 155653360 155653504 -6946426 - L1MB5 LINE L1 -1355 4819 4680 1925 218 77 59 chrX 155653501 155654245 -6945685 - L1MC/D LINE L1 -2242 4298 3542 * 266 205 12 42 chrX 155654263 155654373 -6945557 + (TAA)n Simple_repeat Simple_repeat 1 106 -55 200 29 0 59 chrX 155654373 155654407 -6945523 + (TATAA)n Simple_repeat Simple_repeat 4 35 0 266 205 12 42 chrX 155654407 155654462 -6945468 + (TAA)n Simple_repeat Simple_repeat 106 161 0 1418 113 5 9 chrX 155654464 155654685 -6945245 - L1MA4A LINE L1 -8 6295 6076 5467 207 37 21 chrX 155654685 155656792 -6943138 - L1MDa LINE L1 -2980 3560 1425 266 49 0 24 chrX 155656792 155656833 -6943097 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1414 29 0 40 chrX 155656833 155657006 -6942924 - L1PA3 LINE L1 -24 6131 5966 * 2951 206 73 7 chrX 155656990 155658038 -6941892 - L1MDa LINE L1 -5099 1441 17 234 311 14 0 chrX 155658406 155658480 -6941450 - MIR3 SINE MIR -23 185 111 365 319 26 73 chrX 155660473 155660786 -6939144 + MARNA DNA Mariner 77 374 -212 216 279 47 23 chrX 155661524 155661610 -6938320 + MIR SINE MIR 31 118 -90 661 263 63 0 chrX 155661635 155661825 -6938105 - MIR SINE MIR 0 262 61 310 298 53 23 chrX 155663329 155663460 -6936470 - MIR SINE MIR -109 153 19 215 167 0 0 chrX 155663927 155663969 -6935961 + MIR SINE MIR 111 152 -110 297 224 24 24 chrX 155665060 155665145 -6934785 + CT-rich Low_complexity Low_complexity 2 86 0 190 302 0 19 chrX 155665425 155665478 -6934452 + L2 LINE L2 3200 3251 -21 2829 28 0 0 chrX 155666004 155666328 -6933602 - L1PA2 LINE L1 0 6155 5832 980 187 131 0 chrX 155666586 155666784 -6933146 + MER58A DNA MER1_type 1 224 0 358 301 150 0 chrX 155666987 155667265 -6932665 + L2 LINE L2 2680 2997 -316 535 225 4 29 chrX 155668120 155668391 -6931539 + (CCA)n Simple_repeat Simple_repeat 1 264 0 461 249 65 6 chrX 155668889 155669064 -6930866 - MIR SINE MIR -11 251 64 204 125 0 0 chrX 155669157 155669189 -6930741 + (TTC)n Simple_repeat Simple_repeat 2 33 0 346 263 83 51 chrX 155669645 155669801 -6930129 + MIR SINE MIR 28 188 -74 3332 142 77 9 chrX 155670788 155671357 -6928573 + L1MB5 LINE L1 5566 6173 -1 528 153 119 0 chrX 155671836 155671954 -6927976 + MER69A DNA AcHobo 31 162 -15 826 146 19 25 chrX 155672028 155672186 -6927744 - L1MA9 LINE L1 0 6312 6156 1064 164 29 24 chrX 155672202 155672409 -6927521 + L1MA9 LINE L1 5943 6150 -162 204 40 0 0 chrX 155672785 155672810 -6927120 + (TC)n Simple_repeat Simple_repeat 2 26 0 381 300 42 80 chrX 155672884 155673121 -6926809 + MIR SINE MIR 15 242 -20 312 120 0 0 chrX 155673218 155673268 -6926662 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 305 228 43 33 chrX 155673390 155673482 -6926448 + MIR SINE MIR 125 217 -45 248 250 14 0 chrX 155676267 155676339 -6923591 - MIR SINE MIR -58 150 78 367 263 50 0 chrX 155677477 155677576 -6922354 - MIR SINE MIR -63 145 42 192 182 0 0 chrX 155677993 155678037 -6921893 + CT-rich Low_complexity Low_complexity 1 44 0 248 204 0 0 chrX 155680721 155680770 -6919160 - L2 LINE L2 0 3272 3224 199 266 38 38 chrX 155681160 155681239 -6918691 + MIR3 SINE MIR 78 156 -52 370 274 0 0 chrX 155681323 155681429 -6918501 - MIR SINE MIR -71 191 86 321 224 104 37 chrX 155681483 155681617 -6918313 + MER5B DNA MER1_type 29 171 -7 303 49 0 0 chrX 155682364 155682405 -6917525 + (TG)n Simple_repeat Simple_repeat 2 42 0 378 42 0 0 chrX 155683005 155683053 -6916877 + (TC)n Simple_repeat Simple_repeat 2 49 0 297 0 0 0 chrX 155683052 155683085 -6916845 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 287 67 44 0 chrX 155683089 155683134 -6916796 + CT-rich Low_complexity Low_complexity 3 49 0 207 188 0 0 chrX 155684001 155684049 -6915881 + (CCA)n Simple_repeat Simple_repeat 1 48 0 267 31 0 0 chrX 155684445 155684477 -6915453 + (CAG)n Simple_repeat Simple_repeat 1 32 0 288 53 0 0 chrX 155684753 155684791 -6915139 + (CAG)n Simple_repeat Simple_repeat 3 40 0 241 295 0 16 chrX 155685048 155685109 -6914821 + tRNA-Ile-ATT tRNA tRNA 17 76 -1 707 222 7 0 chrX 155685410 155685554 -6914376 - MIR SINE MIR -98 164 20 1491 240 118 80 chrX 155685680 155686231 -6913699 - MLT1E LTR MaLR 0 593 22 300 296 164 5 chrX 155687521 155687710 -6912220 - MIR SINE MIR -35 227 9 358 206 167 0 chrX 155687759 155687861 -6912069 + MIR SINE MIR 123 241 -21 846 153 0 0 chrX 155688643 155688767 -6911163 - FLAM_C SINE Alu -9 124 1 362 256 68 34 chrX 155689000 155689234 -6910696 + MIR SINE MIR 4 245 -17 518 240 84 20 chrX 155689262 155689529 -6910401 - MER46C DNA MER2_type -17 321 1 666 248 136 5 chrX 155690515 155690729 -6909201 + MIR SINE MIR 21 262 0 4052 152 19 36 chrX 155694720 155694948 -6904982 + L1MB3 LINE L1 5452 5682 -501 1976 141 7 7 chrX 155694948 155695428 -6904502 + AluJo SINE Alu 1 480 0 4052 152 19 36 chrX 155695428 155695941 -6903989 + L1MB3 LINE L1 5682 6181 -2 203 176 0 0 chrX 155697152 155697186 -6902744 + (TTG)n Simple_repeat Simple_repeat 2 35 0 210 241 0 38 chrX 155697644 155697723 -6902207 + T-rich Low_complexity Low_complexity 3 78 0 259 225 169 0 chrX 155698291 155698362 -6901568 - L3 LINE CR1 -304 1273 1191 613 293 38 32 chrX 155699388 155699746 -6900184 - MLT1K LTR MaLR -2 586 248 236 171 0 0 chrX 155700311 155700352 -6899578 + MIR3 SINE MIR 120 160 -48 658 253 98 17 chrX 155700353 155700485 -6899445 - MER5A DNA MER1_type -1 188 37 216 0 0 0 chrX 155700485 155700509 -6899421 + (CTG)n Simple_repeat Simple_repeat 2 25 0 658 253 98 17 chrX 155700509 155700550 -6899380 - MER5A DNA MER1_type -152 37 1 185 274 20 0 chrX 155700553 155700604 -6899326 + MIR3 SINE MIR 156 207 -1 480 287 128 57 chrX 155701029 155701325 -6898605 + L2 LINE L2 2953 3269 -3 185 391 9 26 chrX 155701675 155701790 -6898140 - MIR3 SINE MIR -11 197 85 1986 189 6 11 chrX 155702583 155702934 -6896996 - MLT1A1 LTR MaLR 0 365 15 660 38 0 0 chrX 155702934 155703013 -6896917 - MADE1 DNA Mariner -1 79 1 1986 189 6 11 chrX 155703013 155703027 -6896903 - MLT1A1 LTR MaLR -350 15 2 1422 271 69 9 chrX 155703140 155703576 -6896354 - LTR16B LTR ERVL -2 462 1 258 309 85 0 chrX 155704043 155704137 -6895793 - MIR3 SINE MIR -3 205 104 1030 207 0 9 chrX 155704141 155704358 -6895572 + L1M4 LINE L1 3702 3916 -2230 377 250 45 11 chrX 155704361 155704449 -6895481 - MIR SINE MIR -102 106 16 453 262 36 50 chrX 155704509 155704727 -6895203 - MIR SINE MIR -43 219 8 196 333 15 0 chrX 155706001 155706067 -6893863 + MIR SINE MIR 87 153 -55 212 282 175 29 chrX 155706180 155706283 -6893647 + MIR3 SINE MIR 66 183 -25 317 257 196 28 chrX 155706846 155707025 -6892905 - L1ME3A LINE L1 -5 6165 5957 297 181 26 161 chrX 155707198 155707391 -6892539 - L1ME4a LINE L1 -5 6116 5950 289 215 63 95 chrX 155707433 155707510 -6892420 - L1ME3A LINE L1 -10 6160 6089 2365 93 0 0 chrX 155707510 155707820 -6892110 + AluSg SINE Alu 1 310 0 289 215 63 95 chrX 155707820 155707900 -6892030 - L1ME3A LINE L1 -81 6089 6008 1878 139 3 17 chrX 155707995 155708283 -6891647 + AluJb SINE Alu 1 284 -28 243 0 0 0 chrX 155708287 155708314 -6891616 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2211 120 0 0 chrX 155708320 155708637 -6891293 + AluSx SINE Alu 1 317 0 1042 287 13 52 chrX 155709034 155709497 -6890433 - HAL1 LINE L1 -2062 445 1 907 281 0 30 chrX 155709674 155709937 -6889993 + MIR SINE MIR 5 259 -3 183 80 0 0 chrX 155709938 155709963 -6889967 + (CAT)n Simple_repeat Simple_repeat 3 27 0 2491 96 0 3 chrX 155710672 155710985 -6888945 - AluSx SINE Alu 0 312 1 943 202 44 40 chrX 155711245 155711473 -6888457 + MIR SINE MIR 24 252 -10 22 0 0 0 chrX 155711494 155711516 -6888414 + AT_rich Low_complexity Low_complexity 1 22 0 216 316 35 0 chrX 155711532 155711589 -6888341 + L3 LINE CR1 1032 1090 -487 791 303 29 0 chrX 155711671 155711912 -6888018 - MIR SINE MIR -8 254 7 786 176 36 95 chrX 155711917 155712139 -6887791 - MER3 DNA MER1_type 0 209 1 193 299 23 46 chrX 155713427 155713514 -6886416 - L2 LINE L2 -1 3271 3187 220 375 62 26 chrX 155713561 155713753 -6886177 - L2 LINE L2 -203 3069 2871 886 276 4 18 chrX 155715283 155715508 -6884422 + MIR SINE MIR 28 249 -13 184 256 0 23 chrX 155715583 155715626 -6884304 + L2 LINE L2 3227 3268 -4 195 42 0 0 chrX 155716228 155716252 -6883678 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 335 289 30 28 chrX 155716856 155717031 -6882899 + MIR SINE MIR 33 198 -64 187 350 56 33 chrX 155717200 155717380 -6882550 + L2 LINE L2 3071 3254 -18 273 197 61 30 chrX 155718821 155718887 -6881043 + L2 LINE L2 3244 3311 -2 211 375 0 0 chrX 155719134 155719214 -6880716 - L3 LINE CR1 -4 1573 1494 372 253 6 19 chrX 155719666 155719824 -6880106 + C-rich Low_complexity Low_complexity 3 158 0 396 203 13 8 chrX 155721437 155721537 -6878393 + MIR SINE MIR 72 174 -34 324 260 58 10 chrX 155722314 155722418 -6877512 + MIR SINE MIR 25 133 -75 1162 302 37 41 chrX 155722713 155723203 -6876727 - L3 LINE CR1 -289 1288 801 206 282 14 42 chrX 155723999 155724070 -6875860 - L2 LINE L2 -65 3248 3180 197 385 17 34 chrX 155724475 155724592 -6875338 + MIR SINE MIR 14 128 -134 265 330 176 23 chrX 155725004 155725310 -6874620 - L2 LINE L2 -1 3271 2919 231 146 0 0 chrX 155726147 155726188 -6873742 + (CTG)n Simple_repeat Simple_repeat 3 43 0 190 133 0 0 chrX 155727745 155727775 -6872155 - MIR SINE MIR -60 148 119 335 280 156 13 chrX 155729179 155729486 -6870444 + L2 LINE L2 1714 2064 -1250 1391 139 42 68 chrX 155731274 155731584 -6868346 - MLT2C1 LTR ERVL -95 302 1 488 242 203 23 chrX 155731729 155731972 -6867958 - L2 LINE L2 -245 3068 2791 288 252 39 45 chrX 155732311 155732466 -6867464 + L1M4 LINE L1 4563 4716 -1430 200 163 23 0 chrX 155732468 155732511 -6867419 + GA-rich Low_complexity Low_complexity 2 45 0 272 297 35 7 chrX 155732680 155732825 -6867105 + L1P LINE L1 4901 5049 -1097 2380 91 3 0 chrX 155732831 155733128 -6866802 + AluSp SINE Alu 1 298 -15 343 343 44 17 chrX 155733132 155733313 -6866617 + L1M4 LINE L1 5052 5237 -909 795 174 47 94 chrX 155733363 155733383 -6866547 + L1ME2 LINE L1 5670 5689 -494 1784 92 41 26 chrX 155733383 155733474 -6866456 + L1PA15 LINE L1 5887 5975 -190 2417 88 0 0 chrX 155733474 155733782 -6866148 + AluSx SINE Alu 1 308 -4 1784 92 41 26 chrX 155733782 155733961 -6865969 + L1PA15 LINE L1 5975 6161 -4 795 174 47 94 chrX 155733961 155734222 -6865708 + L1ME2 LINE L1 5689 5931 -252 339 234 11 43 chrX 155734253 155734347 -6865583 + L1MC4 LINE L1 6614 6704 -1338 * 350 250 11 33 chrX 155734275 155734367 -6865563 - L1MC4 LINE L1 -1339 6703 6614 339 224 0 82 chrX 155734363 155734461 -6865469 + L1MC4 LINE L1 6614 6703 -1339 * 349 189 11 84 chrX 155734429 155734524 -6865406 - L1MC4 LINE L1 -1340 6702 6615 371 271 24 0 chrX 155734528 155734613 -6865317 + L1MC4 LINE L1 6614 6700 -1342 353 250 0 52 chrX 155734536 155734632 -6865298 - L1MC4 LINE L1 -1337 6705 6615 * 855 224 16 31 chrX 155734644 155734899 -6865031 + L1ME2 LINE L1 5905 6155 -9 311 287 23 69 chrX 155734941 155735157 -6864773 + L1MC4 LINE L1 7836 8041 -1 442 290 45 54 chrX 155735607 155735921 -6864009 + L1MC4a LINE L1 5274 5584 -537 270 239 0 68 chrX 155735935 155736023 -6863907 - MER5B DNA MER1_type -10 168 87 359 221 142 8 chrX 155736143 155736270 -6863660 + L1MC4a LINE L1 5683 5826 -1982 2079 124 129 46 chrX 155736368 155736589 -6863341 - MSTA LTR MaLR 0 428 227 2358 92 3 13 chrX 155736589 155736904 -6863026 - AluSq SINE Alu -1 312 1 2079 124 129 46 chrX 155736904 155737077 -6862853 - MSTA LTR MaLR -201 227 1 261 57 0 0 chrX 155738552 155738587 -6861343 + (CA)n Simple_repeat Simple_repeat 2 36 0 835 249 5 50 chrX 155739438 155739646 -6860284 + MIR SINE MIR 1 200 -62 2801 186 40 2 chrX 155739646 155740222 -6859708 + L1MB7 LINE L1 5587 6184 0 835 249 5 50 chrX 155740222 155740234 -6859696 + MIR SINE MIR 200 211 -51 1575 188 69 12 chrX 155741520 155741855 -6858075 + MLT2C1 LTR ERVL 1 354 -43 247 185 76 65 chrX 155741965 155742057 -6857873 + MLT2C1 LTR ERVL 257 349 -48 233 229 0 83 chrX 155742066 155742162 -6857768 - L1MC4 LINE L1 -1339 6703 6616 2638 120 41 14 chrX 155742493 155742910 -6857020 - MSTA LTR MaLR 0 428 1 23 0 0 0 chrX 155743008 155743031 -6856899 + AT_rich Low_complexity Low_complexity 1 23 0 2977 64 0 0 chrX 155743031 155743405 -6856525 - L1PA13 LINE L1 0 6163 5790 248 394 56 6 chrX 155743562 155743764 -6856166 - MIR SINE MIR -18 244 34 364 279 107 0 chrX 155744000 155744140 -6855790 - MER45C DNA AcHobo -402 551 397 253 270 32 0 chrX 155745528 155745591 -6854339 + MIR SINE MIR 38 102 -160 513 218 191 7 chrX 155745782 155745929 -6854001 - MIR SINE MIR -63 199 26 2310 98 10 0 chrX 155746719 155746845 -6853085 + AluSx SINE Alu 1 124 -188 369 0 0 0 chrX 155746845 155746886 -6853044 + (CA)n Simple_repeat Simple_repeat 2 42 0 2310 98 10 0 chrX 155746886 155747054 -6852876 + AluSx SINE Alu 124 298 -14 450 0 0 0 chrX 155747054 155747104 -6852826 + (TA)n Simple_repeat Simple_repeat 2 51 0 1572 301 82 57 chrX 155747236 155748555 -6851375 - L2 LINE L2 -13 3259 1900 475 320 210 7 chrX 155748593 155748893 -6851037 + L2 LINE L2 2929 3289 -24 360 325 165 5 chrX 155748996 155749208 -6850722 + L3 LINE CR1 1164 1409 -168 4169 156 53 28 chrX 155749259 155750114 -6849816 + L1MB5 LINE L1 5291 6166 -8 274 260 48 77 chrX 155750806 155750910 -6849020 + MIR3 SINE MIR 73 173 -35 788 294 17 26 chrX 155750954 155751185 -6848745 + MIR SINE MIR 32 260 -2 2608 150 10 53 chrX 155752274 155752463 -6847467 + MLT1C LTR MaLR 1 197 -270 2384 97 3 0 chrX 155752463 155752763 -6847167 + AluSx SINE Alu 1 301 -11 2608 150 10 53 chrX 155752763 155753061 -6846869 + MLT1C LTR MaLR 197 467 0 2727 110 54 12 chrX 155753678 155754087 -6845843 + MSTB LTR MaLR 1 426 0 427 167 93 46 chrX 155755992 155756100 -6843830 + L2 LINE L2 3201 3313 0 564 42 0 0 chrX 155756107 155756178 -6843752 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 609 222 34 111 chrX 155756296 155756530 -6843400 - MIR SINE MIR -19 243 28 216 238 95 95 chrX 155757354 155757522 -6842408 - L2 LINE L2 -61 3211 3044 305 298 205 12 chrX 155757712 155757873 -6842057 + MLT1L LTR MaLR 368 559 -56 337 280 84 53 chrX 155758214 155758439 -6841491 - L2 LINE L2 -398 2916 2685 562 221 60 30 chrX 155758538 155758706 -6841224 + MIR SINE MIR 35 206 -56 924 157 22 16 chrX 155759200 155759385 -6840545 - MER53 DNA DNA -3 186 1 1443 162 0 0 chrX 155759806 155760034 -6839896 - AluSx SINE Alu -29 283 56 271 330 72 0 chrX 155760037 155760088 -6839842 - L2 LINE L2 -11 3261 3215 393 22 0 0 chrX 155760088 155760134 -6839796 + (GA)n Simple_repeat Simple_repeat 1 46 0 271 330 72 0 chrX 155760134 155760179 -6839751 - L2 LINE L2 -57 3215 3158 291 286 63 63 chrX 155760184 155760310 -6839620 - MIR SINE MIR -27 235 110 278 232 14 43 chrX 155760794 155760863 -6839067 - L2 LINE L2 0 3272 3206 524 279 8 0 chrX 155761920 155762042 -6837888 - L2 LINE L2 -4 3309 3187 207 0 0 0 chrX 155762102 155762125 -6837805 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 188 266 23 78 chrX 155762132 155762260 -6837670 - L2 LINE L2 -5 3267 3147 546 165 34 80 chrX 155762527 155762703 -6837227 - MER53 DNA DNA -19 170 3 210 37 0 0 chrX 155763832 155763859 -6836071 + (A)n Simple_repeat Simple_repeat 1 27 0 476 296 28 13 chrX 155763955 155764123 -6835807 + MIR SINE MIR 15 185 -63 1401 189 50 58 chrX 155764768 155765051 -6834879 - MLT1C LTR MaLR -18 449 165 2041 127 0 7 chrX 155765051 155765343 -6834587 + AluY SINE Alu 1 290 -21 207 69 0 0 chrX 155765343 155765372 -6834558 + (CA)n Simple_repeat Simple_repeat 2 30 0 1401 189 50 58 chrX 155765372 155765484 -6834446 - MLT1C LTR MaLR -300 167 56 220 268 155 0 chrX 155765697 155765768 -6834162 + L2 LINE L2 3232 3313 0 1641 199 129 19 chrX 155766553 155766971 -6832959 + MLT1C LTR MaLR 1 464 -3 439 268 55 0 chrX 155767060 155767187 -6832743 - MER94 DNA DNA 0 134 1 230 322 0 35 chrX 155767632 155767719 -6832211 + L2 LINE L2 3186 3269 -3 1609 95 12 12 chrX 155768221 155768464 -6831466 - L1MA8 LINE L1 -267 6024 5782 442 315 27 20 chrX 155768481 155768696 -6831234 + MIR SINE MIR 4 215 -47 2660 169 22 48 chrX 155768778 155769152 -6830778 + L1MB7 LINE L1 4767 5149 -1035 1876 97 47 36 chrX 155769152 155769461 -6830469 + AluY SINE Alu 1 312 0 2660 169 22 48 chrX 155769461 155769615 -6830315 + L1MB7 LINE L1 5149 5306 -878 2289 86 7 23 chrX 155769615 155769917 -6830013 + AluSq SINE Alu 2 298 -15 2660 169 22 48 chrX 155769917 155770453 -6829477 + L1MB7 LINE L1 5306 5814 -370 2497 170 20 28 chrX 155770458 155770951 -6828979 + MER21A-int LTR ERV1 3702 4190 -1 1372 135 70 9 chrX 155770952 155771404 -6828526 + MER21A LTR ERV1 1 500 -363 1801 162 45 3 chrX 155771405 155771757 -6828173 + L1MB7 LINE L1 5798 6164 -20 4198 137 21 44 chrX 155772786 155773042 -6826888 - L1MB2 LINE L1 -9 6162 5902 2171 120 0 16 chrX 155773042 155773350 -6826580 - AluSx SINE Alu -9 303 1 4198 137 21 44 chrX 155773350 155773784 -6826146 - L1MB2 LINE L1 -269 5902 5489 1835 179 7 7 chrX 155773784 155774092 -6825838 - AluJb SINE Alu -4 308 1 4198 137 21 44 chrX 155774092 155774168 -6825762 - L1MB2 LINE L1 -682 5489 5413 3541 196 36 15 chrX 155774169 155774204 -6825726 - L1MB2 LINE L1 -826 5320 5287 2570 60 0 0 chrX 155774204 155774505 -6825425 - AluY SINE Alu -10 301 1 3541 196 36 15 chrX 155774505 155775376 -6824554 - L1MB2 LINE L1 -859 5287 4395 2108 133 7 16 chrX 155775431 155775739 -6824191 - AluSx SINE Alu -7 305 1 199 204 37 19 chrX 155776576 155776630 -6823300 - MIR3 SINE MIR -143 65 11 231 128 0 0 chrX 155776664 155776703 -6823227 + L1ME1 LINE L1 6033 6071 -95 2276 89 0 0 chrX 155776894 155777174 -6822756 - AluSg SINE Alu -5 305 26 2356 117 0 0 chrX 155777190 155777497 -6822433 + AluSx SINE Alu 1 307 -5 2265 215 29 42 chrX 155777503 155777952 -6821978 - L1ME1 LINE L1 -5 6161 5721 2403 74 3 0 chrX 155777952 155778267 -6821663 - AluSc SINE Alu 0 309 1 2265 215 29 42 chrX 155778267 155778436 -6821494 - L1ME1 LINE L1 -445 5721 5551 575 296 39 0 chrX 155778534 155778713 -6821217 - MIR SINE MIR -69 193 8 447 276 66 0 chrX 155778807 155778956 -6820974 - MIR3 SINE MIR -54 154 21 360 0 0 0 chrX 155779580 155779620 -6820310 + (CA)n Simple_repeat Simple_repeat 2 41 0 2347 96 0 7 chrX 155779721 155780024 -6819906 - AluSx SINE Alu -11 301 1 185 156 0 22 chrX 155780892 155780937 -6818993 + (TA)n Simple_repeat Simple_repeat 2 45 0 2326 104 0 0 chrX 155781132 155781440 -6818490 - AluSx SINE Alu -4 308 1 429 364 32 0 chrX 155783077 155783231 -6816699 - MIR3 SINE MIR -5 203 45 568 280 76 9 chrX 155783354 155783565 -6816365 + MARNA DNA Mariner 170 394 -192 429 243 173 6 chrX 155783707 155783880 -6816050 - L2 LINE L2 -1 3312 3111 995 227 40 13 chrX 155784943 155785168 -6814762 + MIR SINE MIR 29 259 -3 337 216 95 52 chrX 155785719 155785835 -6814095 + MIR SINE MIR 32 152 -110 307 308 75 45 chrX 155787894 155788027 -6811903 + MER5A DNA MER1_type 47 183 -6 967 159 183 8 chrX 155788075 155788326 -6811604 - MER33 DNA MER1_type -1 323 29 464 292 139 29 chrX 155788400 155788609 -6811321 - MIR SINE MIR -4 258 27 527 216 82 22 chrX 155788861 155788995 -6810935 - MER5B DNA MER1_type -18 160 19 422 208 173 71 chrX 155789004 155789172 -6810758 - MER5A DNA MER1_type -1 188 4 321 255 46 72 chrX 155789138 155789291 -6810639 + MER5A DNA MER1_type 1 149 -40 * 242 220 0 0 chrX 155789292 155789351 -6810579 - L1M4 LINE L1 -2088 4058 4000 721 147 9 9 chrX 155789433 155789549 -6810381 - FLAM_C SINE Alu -12 131 16 662 262 84 42 chrX 155789557 155789916 -6810014 - L1M4 LINE L1 -2254 3892 3519 245 202 43 75 chrX 155789958 155790052 -6809878 - L1M4 LINE L1 -2839 3307 3217 * 247 185 152 73 chrX 155790038 155790216 -6809714 - L1MC4a LINE L1 -1544 6264 6073 427 215 141 12 chrX 155790233 155790396 -6809534 - L1MC4a LINE L1 -1777 6031 5848 355 310 84 0 chrX 155790440 155790653 -6809277 - L1M4 LINE L1 -3179 2967 2737 * 1760 195 49 29 chrX 155790649 155791509 -6808421 - L1ME1 LINE L1 -263 5903 5002 2317 181 92 54 chrX 155791524 155792119 -6807811 + MLT1E1 LTR MaLR 35 652 -2 2715 191 108 84 chrX 155792120 155792610 -6807320 - L1ME1 LINE L1 -1139 5007 4530 351 0 0 0 chrX 155792610 155792649 -6807281 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 2409 82 3 0 chrX 155792654 155792946 -6806984 - AluSp SINE Alu -20 293 1 2715 191 108 84 chrX 155792946 155793100 -6806830 - L1ME1 LINE L1 -1619 4527 4378 1772 177 0 20 chrX 155793100 155793394 -6806536 - AluJo SINE Alu -24 288 1 2715 191 108 84 chrX 155793394 155793802 -6806128 - L1ME1 LINE L1 -1768 4378 3923 696 278 112 37 chrX 155794589 155794992 -6804938 - MARNA DNA Mariner -142 444 12 553 285 122 5 chrX 155795316 155795530 -6804400 + MIR SINE MIR 12 250 -12 2134 178 48 37 chrX 155796026 155796486 -6803444 + MLT1C LTR MaLR 1 465 -2 370 131 65 0 chrX 155796598 155796766 -6803164 + (TA)n Simple_repeat Simple_repeat 1 179 0 23 219 0 0 chrX 155796909 155796950 -6802980 + GC_rich Low_complexity Low_complexity 1 41 0 382 103 76 0 chrX 155797183 155797328 -6802602 + (TA)n Simple_repeat Simple_repeat 2 157 0 649 271 89 8 chrX 155797448 155797695 -6802235 + L1ME3A LINE L1 5681 5947 -223 1403 166 70 73 chrX 155798002 155798346 -6801584 + MER2 DNA MER2_type 1 343 -1 240 35 0 0 chrX 155798379 155798408 -6801522 + (GA)n Simple_repeat Simple_repeat 1 29 0 204 40 0 0 chrX 155798407 155798432 -6801498 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 2076 139 0 10 chrX 155799945 155800248 -6799682 + AluSx SINE Alu 1 300 -12 612 185 226 0 chrX 155800628 155800774 -6799156 + MER58A DNA MER1_type 45 223 -1 293 176 73 15 chrX 155801090 155801158 -6798772 + MER20B DNA MER1_type 2 73 -710 864 166 50 15 chrX 155801168 155801367 -6798563 + MER20B DNA MER1_type 578 783 0 322 289 111 0 chrX 155802280 155802370 -6797560 - L2 LINE L2 0 3313 3214 302 273 83 8 chrX 155802541 155802662 -6797268 + MIR3 SINE MIR 43 172 -36 25 0 0 0 chrX 155803231 155803256 -6796674 + AT_rich Low_complexity Low_complexity 1 25 0 371 270 126 0 chrX 155803360 155803471 -6796459 - MIR SINE MIR -137 125 1 1211 160 75 26 chrX 155803669 155803937 -6795993 + L1MB8 LINE L1 5895 6175 -3 200 314 29 0 chrX 155804683 155804753 -6795177 - L2 LINE L2 -58 3214 3143 997 55 86 0 chrX 155804929 155805057 -6794873 - MER85 DNA T2_type 0 139 1 2328 84 3 3 chrX 155806165 155806462 -6793468 - AluSx SINE Alu -15 297 1 225 130 148 19 chrX 155806858 155806912 -6793018 - L1ME LINE L1 -543 5578 5518 1976 151 3 3 chrX 155807002 155807300 -6792630 + AluJb SINE Alu 1 298 -14 328 280 76 68 chrX 155807301 155807403 -6792527 - L1ME LINE L1 -763 5383 5283 207 100 0 0 chrX 155807403 155807433 -6792497 + (TG)n Simple_repeat Simple_repeat 2 31 0 2096 134 0 0 chrX 155807437 155807728 -6792202 - AluSx SINE Alu -21 291 1 328 280 76 68 chrX 155807728 155807884 -6792046 - L1ME LINE L1 -865 5281 5118 1839 126 28 25 chrX 155808502 155808788 -6791142 + AluSx SINE Alu 7 293 -19 1905 176 0 0 chrX 155811129 155811430 -6788500 + AluJb SINE Alu 6 306 -6 204 295 65 93 chrX 155813165 155813304 -6786626 + L3 LINE CR1 185 319 -1258 1251 283 188 20 chrX 155813463 155814063 -6785867 + L3 LINE CR1 627 1327 -250 436 258 53 20 chrX 155814287 155814438 -6785492 + L1ME4a LINE L1 5963 6118 -3 236 291 102 53 chrX 155815163 155815428 -6784502 + L2 LINE L2 2842 3119 -153 371 323 185 9 chrX 155815442 155815674 -6784256 + L2 LINE L2 3041 3313 0 211 272 111 12 chrX 155815718 155815799 -6784131 + L2 LINE L2 3179 3267 -5 200 268 36 18 chrX 155816154 155816210 -6783720 - L2 LINE L2 -5 3267 3211 278 301 62 35 chrX 155816348 155816461 -6783469 - L2 LINE L2 -207 3065 2950 366 329 158 36 chrX 155816672 155817444 -6782486 - L2 LINE L2 -588 2726 1861 261 0 0 0 chrX 155819584 155819613 -6780317 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 579 82 58 53 chrX 155820112 155820283 -6779647 + CT-rich Low_complexity Low_complexity 1 172 0 1932 115 24 31 chrX 155820319 155820607 -6779323 - AluSx SINE Alu -26 286 1 687 293 140 36 chrX 155821050 155821530 -6778400 - L2 LINE L2 -1 3271 2766 1985 138 7 0 chrX 155821555 155821838 -6778092 - AluJo SINE Alu -27 285 1 1515 132 96 4 chrX 155821844 155822124 -6777806 - L1MA8 LINE L1 0 6291 5986 216 0 0 0 chrX 155822124 155822148 -6777782 + (ATG)n Simple_repeat Simple_repeat 2 25 0 2204 88 14 0 chrX 155822162 155822446 -6777484 - AluSq SINE Alu -25 288 1 290 302 265 12 chrX 155822515 155822843 -6777087 - L2 LINE L2 -578 2736 2326 266 325 61 57 chrX 155822841 155823053 -6776877 + L2 LINE L2 2263 2475 -839 * 225 146 0 0 chrX 155823706 155823754 -6776176 + (GA)n Simple_repeat Simple_repeat 1 48 0 200 293 146 41 chrX 155824648 155824771 -6775159 - MIR SINE MIR -107 155 20 1491 219 116 51 chrX 155824812 155825232 -6774698 - L1MD2 LINE L1 -16 6343 5881 1821 154 20 7 chrX 155825232 155825525 -6774405 + AluJb SINE Alu 1 297 -15 1491 219 116 51 chrX 155825525 155825630 -6774300 - L1MD2 LINE L1 -478 5881 5784 1438 129 112 65 chrX 155825729 155826007 -6773923 + AluJo SINE Alu 1 291 -21 2303 105 3 0 chrX 155826021 155826316 -6773614 + AluSx SINE Alu 1 296 -16 901 134 67 49 chrX 155826327 155826491 -6773439 + AluJb SINE Alu 145 311 -1 255 262 0 48 chrX 155826829 155826913 -6773017 - L1MD2 LINE L1 -472 5649 5570 344 258 45 0 chrX 155826973 155827062 -6772868 + MIR SINE MIR 138 230 -32 238 349 67 26 chrX 155827415 155827610 -6772320 - L2 LINE L2 -261 3052 2850 521 203 78 8 chrX 155828681 155828809 -6771121 - MER58C DNA MER1_type 0 215 79 292 370 16 8 chrX 155828862 155828989 -6770941 - MIR3 SINE MIR -50 158 31 41 27 0 40 chrX 155831654 155831688 -6768242 + AT_rich Low_complexity Low_complexity 1 35 -36 2120 101 3 7 chrX 155831688 155831976 -6767954 + AluSx SINE Alu 1 287 -25 41 27 0 40 chrX 155831976 155832015 -6767915 + AT_rich Low_complexity Low_complexity 35 71 0 2328 93 3 7 chrX 155834157 155834459 -6765471 + AluSq SINE Alu 6 306 -7 180 326 95 11 chrX 155834859 155834954 -6764976 + L2 LINE L2 2860 2962 -352 190 283 22 0 chrX 155836652 155836698 -6763232 + L2 LINE L2 3188 3234 -38 244 329 29 7 chrX 155836918 155837055 -6762875 - L2 LINE L2 -1689 1625 1486 836 228 134 5 chrX 155837901 155838125 -6761805 - MER112 DNA MER1_type -1 255 3 879 247 75 4 chrX 155838407 155838634 -6761296 + MIR SINE MIR 14 256 -6 2310 88 13 3 chrX 155839620 155839925 -6760005 - AluSc SINE Alu -1 308 1 185 313 27 61 chrX 155840390 155840537 -6759393 + L2 LINE L2 1788 1929 -1385 783 279 81 66 chrX 155840692 155841284 -6758646 - L1MEd LINE L1 -5062 1057 457 663 110 0 0 chrX 155842044 155842135 -6757795 - AluJo SINE Alu -4 308 218 825 225 6 12 chrX 155842137 155842297 -6757633 - AluJo SINE Alu -152 160 2 227 291 102 87 chrX 155842645 155842910 -6757020 + L2 LINE L2 3000 3268 -4 414 180 8 141 chrX 155843309 155843410 -6756520 - MLT1D LTR MaLR -414 91 29 2066 120 7 7 chrX 155843410 155843710 -6756220 - AluSx SINE Alu -12 300 1 414 180 8 141 chrX 155843710 155843736 -6756194 - MLT1D LTR MaLR -476 29 1 484 273 73 0 chrX 155843737 155843957 -6755973 - L1MC/D LINE L1 -2310 5498 5263 3365 176 22 0 chrX 155844070 155844620 -6755310 - MER68 LTR ERV1 0 562 1 2271 110 0 16 chrX 155844697 155845014 -6754916 + AluSx SINE Alu 1 312 0 857 318 76 47 chrX 155845657 155846409 -6753521 - L2 LINE L2 -428 2886 2113 203 341 0 24 chrX 155846520 155846605 -6753325 - MIR SINE MIR -123 139 57 1952 130 3 17 chrX 155847067 155847367 -6752563 + AluSx SINE Alu 1 296 -16 352 165 266 9 chrX 155848082 155848191 -6751739 + L1MD2 LINE L1 6204 6340 -19 204 146 0 24 chrX 155848308 155848349 -6751581 - MER5A DNA MER1_type -71 118 79 1449 283 188 24 chrX 155850727 155851765 -6748165 - L2 LINE L2 -1 3312 2103 183 330 176 11 chrX 155854835 155854926 -6745004 - L2 LINE L2 -11 3261 3156 819 232 26 0 chrX 155855575 155855765 -6744165 - L1MC4 LINE L1 -560 7482 7288 229 259 17 17 chrX 155855852 155855910 -6744020 + tRNA-Ile-ATT tRNA tRNA 7 64 -13 184 244 0 0 chrX 155856046 155856087 -6743843 - L2 LINE L2 0 3313 3273 510 263 83 83 chrX 155856772 155857122 -6742808 - L1ME4a LINE L1 -101 6020 5671 68 48 0 0 chrX 155857417 155857520 -6742410 + AT_rich Low_complexity Low_complexity 1 103 0 339 238 111 20 chrX 155858061 155858205 -6741725 - MIR SINE MIR -32 176 25 455 119 12 0 chrX 155858224 155858308 -6741622 - L1MB8 LINE L1 -1 6177 6093 243 0 0 0 chrX 155860512 155860539 -6739391 + (TA)n Simple_repeat Simple_repeat 2 28 0 587 283 120 21 chrX 155862168 155862401 -6737529 + MIR SINE MIR 1 256 -6 456 275 28 21 chrX 155862440 155862582 -6737348 - MIR SINE MIR -94 168 26 212 77 26 0 chrX 155863559 155863598 -6736332 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 234 289 121 46 chrX 155864213 155864386 -6735544 + L2 LINE L2 2871 3056 -216 1181 128 14 112 chrX 155864496 155864792 -6735138 - L1MC3 LINE L1 -6 7779 7513 180 0 0 0 chrX 155864803 155864823 -6735107 + (T)n Simple_repeat Simple_repeat 1 20 0 1538 147 13 99 chrX 155865556 155865868 -6734062 + AluJo SINE Alu 7 291 -21 246 62 0 0 chrX 155865909 155865941 -6733989 + (TA)n Simple_repeat Simple_repeat 1 32 0 308 336 58 7 chrX 155865941 155865976 -6733954 + L1ME4a LINE L1 5935 5967 -154 363 44 0 0 chrX 155865976 155866021 -6733909 + (CA)n Simple_repeat Simple_repeat 2 46 0 308 336 58 7 chrX 155866021 155866122 -6733808 + L1ME4a LINE L1 5967 6078 -43 1053 165 20 59 chrX 155866623 155866878 -6733052 - MLT1D LTR MaLR -260 245 1 240 321 38 19 chrX 155867296 155867402 -6732528 - MIR SINE MIR -153 109 2 661 181 38 0 chrX 155867933 155868066 -6731864 - L1PB4 LINE L1 -2 6154 6017 2516 233 15 26 chrX 155868241 155868361 -6731569 + L1ME1 LINE L1 5486 5606 -560 2468 57 3 3 chrX 155868361 155868661 -6731269 + AluY SINE Alu 1 300 -11 2516 233 15 26 chrX 155868661 155869224 -6730706 + L1ME1 LINE L1 5606 6161 -5 1222 199 34 93 chrX 155869466 155869874 -6730056 + MLT1B LTR MaLR 2 385 -5 7467 22 12 5 chrX 155869970 155870950 -6728980 + L1PA5 LINE L1 5165 6154 0 502 176 114 0 chrX 155871717 155871848 -6728082 + L1MA8 LINE L1 6046 6191 -100 32 0 0 0 chrX 155871888 155871920 -6728010 + AT_rich Low_complexity Low_complexity 1 32 0 224 324 0 0 chrX 155872005 155872079 -6727851 - MER5A DNA MER1_type -115 74 1 2142 113 7 3 chrX 155872149 155872470 -6727460 - AluSq SINE Alu 0 322 1 267 226 140 11 chrX 155873131 155873224 -6726706 + L1MC5 LINE L1 7749 7853 -108 2435 114 30 47 chrX 155873938 155874311 -6725619 - MSTB1 LTR MaLR -10 422 55 1898 164 6 6 chrX 155874311 155874641 -6725289 - AluSx SINE Alu 0 312 1 2435 114 30 47 chrX 155874641 155874696 -6725234 - MSTB1 LTR MaLR -377 55 1 3641 155 50 10 chrX 155874696 155875393 -6724537 + L1MA9 LINE L1 5583 6307 -5 340 158 171 0 chrX 155875419 155875501 -6724429 + HAL1 LINE L1 2412 2507 0 2376 86 0 0 chrX 155875639 155875941 -6723989 - AluSq SINE Alu -11 302 1 23 0 0 0 chrX 155877062 155877085 -6722845 + AT_rich Low_complexity Low_complexity 1 23 0 253 355 123 13 chrX 155878565 155878720 -6721210 - L2 LINE L2 -5 3267 3096 455 256 171 17 chrX 155879546 155879780 -6720150 - L1 LINE L1 -1736 4410 4141 1654 257 92 39 chrX 155880037 155880885 -6719045 + L2 LINE L2 2334 3279 -34 1120 191 63 74 chrX 155881183 155881629 -6718301 + MLT1C LTR MaLR 1 451 -16 1549 146 12 109 chrX 155881722 155882052 -6717878 + AluJo SINE Alu 1 298 -14 186 43 0 0 chrX 155882206 155882229 -6717701 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 6301 61 11 4 chrX 155882249 155883341 -6716589 - L1PA8A LINE L1 -28 6103 5003 394 224 64 8 chrX 155883396 155883521 -6716409 + L1ME3 LINE L1 6022 6153 -9 367 257 5 9 chrX 155883649 155883756 -6716174 - MIR SINE MIR -63 145 93 592 317 85 15 chrX 155883808 155884218 -6715712 + L1ME3A LINE L1 5361 5799 -371 21 0 0 0 chrX 155885537 155885558 -6714372 + AT_rich Low_complexity Low_complexity 1 21 0 241 303 8 41 chrX 155887015 155887137 -6712793 - MIR SINE MIR -65 197 80 205 345 78 0 chrX 155887149 155887265 -6712665 - L3 LINE CR1 -199 1378 1254 183 266 47 0 chrX 155888258 155888322 -6711608 + MIR3 SINE MIR 117 183 -25 335 200 0 0 chrX 155888396 155888466 -6711464 - L1MA6 LINE L1 -4 6296 6227 1027 154 32 5 chrX 155888466 155888654 -6711276 + L1MA6 LINE L1 5884 6076 -224 1808 186 91 32 chrX 155888717 155889191 -6710739 - MLT1D LTR MaLR -3 502 1 204 304 179 0 chrX 155889434 155889546 -6710384 - MIR SINE MIR -20 242 111 273 393 111 16 chrX 155889578 155889822 -6710108 - L2 LINE L2 -9 3263 2997 3288 168 22 59 chrX 155889824 155890126 -6709804 + L1 LINE L1 3817 4129 -2017 1617 143 22 96 chrX 155890126 155890448 -6709482 + AluJo SINE Alu 2 299 -13 3288 168 22 59 chrX 155890448 155890532 -6709398 + L1 LINE L1 4129 4215 -1931 1948 145 17 14 chrX 155890532 155890828 -6709102 - AluJb SINE Alu -15 297 1 3288 168 22 59 chrX 155890828 155891258 -6708672 + L1 LINE L1 4215 4604 -1542 487 206 44 31 chrX 155891253 155891363 -6708567 + L1ME3A LINE L1 5791 5905 -265 * 1761 149 23 35 chrX 155891363 155891705 -6708225 - MER44D DNA MER2_type -1 608 1 487 206 44 31 chrX 155891705 155891754 -6708176 + L1ME3A LINE L1 5905 5952 -218 243 336 216 18 chrX 155891971 155892653 -6707277 - L2 LINE L2 -633 2681 1865 257 235 71 35 chrX 155893089 155893174 -6706756 + L2 LINE L2 3226 3313 0 1240 43 12 6 chrX 155893243 155893404 -6706526 + L1PA4 LINE L1 5991 6152 -3 26 0 0 0 chrX 155893404 155893430 -6706500 + AT_rich Low_complexity Low_complexity 1 26 0 1724 154 39 110 chrX 155893737 155894257 -6705673 + MLT1D LTR MaLR 12 494 -11 384 317 81 5 chrX 155894517 155894703 -6705227 + L1MEd LINE L1 612 811 -5308 809 265 10 0 chrX 155894714 155894914 -6705016 - MER63A DNA MER1_type -8 202 1 5254 127 19 45 chrX 155894959 155895406 -6704524 + L1MC2 LINE L1 5057 5514 -830 2725 26 0 3 chrX 155895406 155895717 -6704213 + AluY SINE Alu 1 310 -1 5254 127 19 45 chrX 155895717 155896591 -6703339 + L1MC2 LINE L1 5514 6343 -1 689 221 44 33 chrX 155896941 155897122 -6702808 + LTR41 LTR ERVL 4 186 -587 6294 115 20 17 chrX 155897219 155898276 -6701654 + L1M1 LINE L1 2660 3722 -3843 219 167 0 0 chrX 155898865 155898907 -6701023 + (CAA)n Simple_repeat Simple_repeat 3 44 0 316 341 105 28 chrX 155899012 155899327 -6700603 + L2 LINE L2 1869 2221 -1093 952 209 6 28 chrX 155899327 155899509 -6700421 + MER45A DNA AcHobo 1 178 0 316 341 105 28 chrX 155899509 155899583 -6700347 + L2 LINE L2 2221 2288 -1026 23 33 0 0 chrX 155899635 155899665 -6700265 + AT_rich Low_complexity Low_complexity 1 30 0 1816 145 14 4 chrX 155900202 155900478 -6699452 - MSTC LTR MaLR 0 428 150 1042 284 21 0 chrX 155900486 155900775 -6699155 + Charlie8 DNA MER1_type 1511 1805 -612 261 200 154 0 chrX 155900784 155900849 -6699081 + L2 LINE L2 2259 2333 -981 328 262 14 103 chrX 155900850 155900914 -6699016 + MER91B DNA MER1_type 1 46 -144 1434 149 56 121 chrX 155900914 155901304 -6698626 + MLT1A1 LTR MaLR 1 365 0 328 262 14 103 chrX 155901304 155901384 -6698546 + MER91B DNA MER1_type 46 132 -58 329 281 0 11 chrX 155901402 155901491 -6698439 + MER91B DNA MER1_type 90 177 -13 371 316 164 47 chrX 155901506 155901889 -6698041 + L2 LINE L2 2332 2759 -555 511 242 42 53 chrX 155901897 155902087 -6697843 + MER5A DNA MER1_type 1 188 -1 374 116 27 144 chrX 155902703 155902773 -6697157 - MLT1H1 LTR MaLR -390 159 86 2323 78 0 0 chrX 155902773 155903083 -6696847 - AluSx SINE Alu 0 310 1 374 116 27 144 chrX 155903083 155903134 -6696796 - MLT1H1 LTR MaLR -463 86 31 432 318 36 21 chrX 155903137 155903329 -6696601 + LTR40b LTR ERVL 267 461 -1 1740 239 48 34 chrX 155903452 155904005 -6695925 - MLT1G1 LTR MaLR 0 555 3 203 211 141 28 chrX 155904033 155904104 -6695826 + MER5A DNA MER1_type 2 80 -109 503 307 50 94 chrX 155904194 155904269 -6695661 + L2 LINE L2 2858 2935 -337 2380 176 14 52 chrX 155904269 155904711 -6695219 + MSTB LTR MaLR 2 426 0 503 307 50 94 chrX 155904711 155904997 -6694933 + L2 LINE L2 2935 3203 -69 396 311 87 35 chrX 155905140 155905191 -6694739 - MLT1L LTR MaLR -5 610 563 1648 184 53 68 chrX 155905191 155905571 -6694359 - MLT1A2 LTR MaLR 0 374 1 396 311 87 35 chrX 155905571 155905773 -6694157 - MLT1L LTR MaLR -52 563 344 235 169 31 31 chrX 155906618 155906683 -6693247 + C-rich Low_complexity Low_complexity 6 70 0 200 98 0 24 chrX 155906858 155906899 -6693031 + (CGG)n Simple_repeat Simple_repeat 1 40 0 23 86 0 0 chrX 155906904 155906962 -6692968 + GC_rich Low_complexity Low_complexity 1 58 0 27 110 0 0 chrX 155906998 155907116 -6692814 + GC_rich Low_complexity Low_complexity 1 118 0 21 0 0 0 chrX 155907964 155907985 -6691945 + AT_rich Low_complexity Low_complexity 1 21 0 261 86 0 0 chrX 155908270 155908305 -6691625 + MER34C LTR ERV1 40 74 -511 1911 263 113 21 chrX 155908331 155909187 -6690743 - L2 LINE L2 -254 3059 2128 362 326 0 31 chrX 155909732 155909861 -6690069 - MIR3 SINE MIR -75 133 9 464 256 47 63 chrX 155909861 155910052 -6689878 - MLT1K LTR MaLR -3 585 398 325 211 169 0 chrX 155910957 155911028 -6688902 + MIR SINE MIR 62 144 -118 2276 82 0 10 chrX 155911346 155911639 -6688291 + AluSx SINE Alu 21 310 -2 1697 142 84 0 chrX 155911872 155911987 -6687943 + AluJb SINE Alu 1 105 -207 429 70 0 0 chrX 155911987 155912044 -6687886 + (CA)n Simple_repeat Simple_repeat 2 58 0 1697 142 84 0 chrX 155912044 155912203 -6687727 + AluJb SINE Alu 105 298 -14 306 289 106 0 chrX 155913153 155913257 -6686673 + L2 LINE L2 3158 3272 0 21 57 0 0 chrX 155914521 155914556 -6685374 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chrX 155914916 155914940 -6684990 + (CAT)n Simple_repeat Simple_repeat 3 26 0 539 226 68 100 chrX 155914955 155915023 -6684907 - MIR SINE MIR -37 225 156 979 201 38 0 chrX 155915023 155915182 -6684748 + FAM SINE Alu 2 166 -9 539 226 68 100 chrX 155915182 155915303 -6684627 - MIR SINE MIR -106 156 42 198 103 0 0 chrX 155915371 155915400 -6684530 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1004 128 0 0 chrX 155915406 155915539 -6684391 - FLAM_C SINE Alu 0 133 1 493 250 137 36 chrX 155915544 155915712 -6684218 + MER5A DNA MER1_type 1 185 -4 253 187 32 89 chrX 155916034 155916157 -6683773 - MER113 DNA MER1_type? -405 116 1 289 224 112 56 chrX 155916567 155916674 -6683256 + MIR3 SINE MIR 79 191 -17 6937 183 83 16 chrX 155917311 155919107 -6680823 + L1MD1 LINE L1 17 2085 -4455 534 210 33 99 chrX 155919101 155919282 -6680648 + L1MD1 LINE L1 4647 4815 -1725 * 1074 188 94 36 chrX 155919282 155919635 -6680295 - MSTC LTR MaLR 0 428 7 518 200 0 58 chrX 155919636 155919823 -6680107 - L1M3 LINE L1 -612 5571 5219 5139 190 54 14 chrX 155919860 155920370 -6679560 + L1MD1 LINE L1 4814 5302 -1334 225 0 0 0 chrX 155920370 155920395 -6679535 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5139 190 54 14 chrX 155920395 155921630 -6678300 + L1MD1 LINE L1 5302 6635 -1 437 294 86 37 chrX 155922085 155922272 -6677658 - MIR SINE MIR -58 204 9 234 313 127 0 chrX 155922358 155922508 -6677422 - MIR3 SINE MIR -24 184 16 2391 162 67 0 chrX 155922824 155923225 -6676705 - MSTA LTR MaLR 0 428 1 778 222 111 41 chrX 155923511 155923650 -6676280 + MIR SINE MIR 2 130 -132 2136 85 14 3 chrX 155923650 155923977 -6675953 - AluSx SINE Alu 0 330 1 778 222 111 41 chrX 155923977 155924079 -6675851 + MIR SINE MIR 130 261 -1 278 268 103 36 chrX 155924139 155924306 -6675624 + HAL1b LINE L1 830 2397 -110 430 267 27 14 chrX 155924360 155924506 -6675424 - L1MA10 LINE L1 0 6334 6187 276 30 0 0 chrX 155927233 155927266 -6672664 + (CA)n Simple_repeat Simple_repeat 2 34 0 2555 56 0 3 chrX 155930394 155930699 -6669231 + AluSc SINE Alu 1 304 -5 232 122 0 82 chrX 155930706 155930755 -6669175 - MER103 DNA DNA -105 61 17 23 0 0 0 chrX 155930755 155930778 -6669152 + AT_rich Low_complexity Low_complexity 1 23 0 201 39 0 0 chrX 155931379 155931405 -6668525 + (CA)n Simple_repeat Simple_repeat 1 26 0 315 0 0 0 chrX 155931901 155931936 -6667994 + (T)n Simple_repeat Simple_repeat 1 35 0 1916 254 75 16 chrX 155933520 155934084 -6665846 - L1ME1 LINE L1 -61 6174 5578 * 7870 221 49 9 chrX 155934077 155936151 -6663779 - L1ME1 LINE L1 -1955 4260 2134 6471 131 21 12 chrX 155936147 155936168 -6663762 - L1PA13 LINE L1 -1 6162 6143 * 6929 20 0 3 chrX 155936168 155936920 -6663010 - L1PA3 LINE L1 0 6155 5406 6471 131 21 12 chrX 155936920 155938806 -6661124 - L1PA13 LINE L1 -20 6143 4235 1189 184 99 7 chrX 155938806 155939089 -6660841 - L1ME1 LINE L1 -4256 2140 1832 2521 119 0 18 chrX 155939341 155939684 -6660246 + MER1B DNA MER1_type 1 337 0 258 198 0 29 chrX 155940669 155940745 -6659185 - L1ME4a LINE L1 -46 6052 1243 2224 152 12 6 chrX 155941312 155941654 -6658276 + MER2 DNA MER2_type 1 344 0 269 354 131 18 chrX 155942343 155942524 -6657406 + L2 LINE L2 2718 2932 -382 285 51 0 0 chrX 155942524 155942563 -6657367 + (CA)n Simple_repeat Simple_repeat 2 40 0 269 354 131 18 chrX 155942563 155942610 -6657320 + L2 LINE L2 2932 2972 -342 1832 118 0 0 chrX 155943053 155943299 -6656631 + AluSq SINE Alu 1 246 -67 230 200 0 36 chrX 155945609 155945664 -6654266 - MIR3 SINE MIR -3 205 153 514 295 94 64 chrX 155946517 155946846 -6653084 + L2 LINE L2 1999 2337 -977 770 237 19 53 chrX 155946879 155947141 -6652789 + MIR SINE MIR 6 258 -4 257 272 68 0 chrX 155947159 155947262 -6652668 - L2 LINE L2 -846 2468 2359 875 180 171 130 chrX 155947263 155947747 -6652183 - MLT1D LTR MaLR -1 504 1 445 213 47 24 chrX 155948041 155948168 -6651762 - L1 LINE L1 -1906 4240 4111 * 1286 194 0 40 chrX 155948137 155948172 -6651758 - L1 LINE L1 -2287 3859 3824 2044 209 64 7 chrX 155948172 155948612 -6651318 + MLT1C LTR MaLR 1 465 -2 1286 194 0 40 chrX 155948612 155948854 -6651076 - L1 LINE L1 -2322 3824 3593 248 293 70 81 chrX 155948855 155948980 -6650950 + L2 LINE L2 2593 2718 -596 1113 89 137 0 chrX 155948980 155949170 -6650760 - L1MA8 LINE L1 -6 6285 6070 248 293 70 81 chrX 155949170 155949303 -6650627 + L2 LINE L2 2718 2848 -466 1569 208 55 17 chrX 155949369 155949787 -6650143 + MLT1C LTR MaLR 34 467 0 2021 189 38 29 chrX 155950977 155951101 -6648829 - L1MB5 LINE L1 0 6174 6053 2385 89 3 0 chrX 155951101 155951405 -6648525 + AluSq SINE Alu 1 305 -8 2021 189 38 29 chrX 155951405 155951757 -6648173 - L1MB5 LINE L1 -121 6053 5694 1528 189 25 70 chrX 155951759 155952161 -6647769 - MLT1B LTR MaLR 0 626 1 225 193 18 18 chrX 155952162 155952219 -6647711 - L1MB5 LINE L1 -511 5669 5613 347 272 216 0 chrX 155952531 155952656 -6647274 + MIR SINE MIR 89 240 -22 405 269 222 0 chrX 155953032 155953203 -6646727 - MIR SINE MIR -2 260 52 1462 276 194 12 chrX 155953216 155953862 -6646068 + L2 LINE L2 1450 2212 -1102 405 328 24 58 chrX 155953940 155953955 -6645975 + L2 LINE L2 2622 2636 -678 3012 87 31 14 chrX 155953955 155954380 -6645550 - MSTB1 LTR MaLR 0 432 1 405 328 24 58 chrX 155954380 155954657 -6645273 + L2 LINE L2 2636 2904 -410 220 304 0 29 chrX 155955019 155955088 -6644842 + L2 LINE L2 3245 3311 -2 1301 178 0 0 chrX 155955186 155955417 -6644513 + L1MB3 LINE L1 5561 5791 -392 1995 142 39 3 chrX 155955417 155955747 -6644183 - MER7A DNA MER2_type 0 346 7 1876 133 41 85 chrX 155955769 155955851 -6644079 + L1MB3 LINE L1 5787 5871 -312 2750 42 0 3 chrX 155955851 155956162 -6643768 + AluY SINE Alu 1 310 -1 1876 133 41 85 chrX 155956162 155956441 -6643489 + L1MB3 LINE L1 5871 6130 -53 1905 164 10 3 chrX 155956441 155956739 -6643191 + AluJo SINE Alu 5 304 -8 1876 133 41 85 chrX 155956739 155956788 -6643142 + L1MB3 LINE L1 6130 6180 -3 247 243 40 27 chrX 155957522 155957596 -6642334 - L2 LINE L2 -2 3270 3196 266 250 0 0 chrX 155959049 155959113 -6640817 - MER5B DNA MER1_type -114 64 1 391 252 92 0 chrX 155959139 155959270 -6640660 + MER5A DNA MER1_type 47 189 0 425 292 201 0 chrX 155959286 155959430 -6640500 - MER5A DNA MER1_type -8 181 9 204 322 0 0 chrX 155960051 155960110 -6639820 + MIR3 SINE MIR 137 195 -13 2000 142 3 23 chrX 155960483 155960786 -6639144 + AluJo SINE Alu 1 297 -15 2230 167 6 8 chrX 155961209 155961575 -6638355 - MLT1A1 LTR MaLR 0 365 1 1592 155 30 69 chrX 155961852 155962156 -6637774 + AluJb SINE Alu 1 292 -20 487 234 6 114 chrX 155962972 155963147 -6636783 - L1M4 LINE L1 -2241 3905 3750 2238 58 0 29 chrX 155963175 155963453 -6636477 + AluSg SINE Alu 23 292 -18 366 250 29 0 chrX 155963465 155963569 -6636361 - L1M4 LINE L1 -2618 3528 3422 592 268 22 6 chrX 155963630 155963809 -6636121 - L1MEc LINE L1 -6177 219 38 203 313 164 22 chrX 155964320 155964454 -6635476 - MIR3 SINE MIR -49 159 7 290 275 154 26 chrX 155964818 155965051 -6634879 + L2 LINE L2 1956 2218 -1096 704 293 42 95 chrX 155965051 155965223 -6634707 + L2 LINE L2 2379 2559 -755 2162 96 7 3 chrX 155965223 155965514 -6634416 - AluSq SINE Alu -1 312 21 704 293 42 95 chrX 155965514 155965771 -6634159 + L2 LINE L2 2559 2785 -529 253 125 62 0 chrX 155965824 155965872 -6634058 + L1MB7 LINE L1 6124 6174 -10 216 0 0 0 chrX 155965941 155965965 -6633965 + (T)n Simple_repeat Simple_repeat 1 24 0 552 179 15 8 chrX 155965987 155966121 -6633809 - L1MB7 LINE L1 0 6184 6050 923 121 0 8 chrX 155966126 155966258 -6633672 - FLAM_C SINE Alu -12 131 1 3882 168 37 12 chrX 155966262 155967633 -6632297 - L1MB8 LINE L1 -117 6061 4657 2269 106 0 7 chrX 155968058 155968361 -6631569 + AluSx SINE Alu 1 301 -11 1540 178 60 21 chrX 155968379 155968660 -6631270 - AluJo SINE Alu -20 292 1 2265 123 3 0 chrX 155969958 155970267 -6629663 - AluSx SINE Alu -2 310 1 220 368 13 0 chrX 155971318 155971394 -6628536 + L2 LINE L2 3196 3272 0 2340 96 3 17 chrX 155971828 155972129 -6627801 + AluSg SINE Alu 1 297 -13 2408 88 0 25 chrX 155973958 155974278 -6625652 + AluSx SINE Alu 1 312 0 185 255 0 21 chrX 155978304 155978351 -6621579 - MIR SINE MIR -2 260 215 270 0 0 0 chrX 155978426 155978456 -6621474 + (TAAG)n Simple_repeat Simple_repeat 1 30 0 257 0 30 0 chrX 155978478 155978511 -6621419 + (ATTG)n Simple_repeat Simple_repeat 1 34 0 490 182 50 0 chrX 155986913 155987012 -6612918 + MLT1D LTR MaLR 39 142 -363 431 214 0 11 chrX 155987068 155987157 -6612773 + MLT1D LTR MaLR 303 390 0 22 0 0 0 chrX 155987439 155987461 -6612469 + AT_rich Low_complexity Low_complexity 1 22 0 4454 88 11 30 chrX 155990056 155990723 -6609207 - MER4A LTR ERV1 -10 654 1 269 188 0 0 chrX 155991256 155991304 -6608626 + MER46C DNA MER2_type 2 49 -289 652 229 62 0 chrX 155991306 155991485 -6608445 + L1MD2 LINE L1 5947 6136 -223 180 111 0 0 chrX 155991486 155991513 -6608417 + (CACG)n Simple_repeat Simple_repeat 1 27 0 978 139 6 35 chrX 155991734 155991907 -6608023 + L1MC1 LINE L1 6166 6333 0 375 62 0 0 chrX 155991915 155991963 -6607967 - L1PA5 LINE L1 -79 6075 6028 271 102 0 0 chrX 155991950 155991999 -6607931 + L1PA6 LINE L1 6105 6153 -1 * 192 40 0 0 chrX 155991999 155992024 -6607906 + (TA)n Simple_repeat Simple_repeat 2 26 0 350 346 139 13 chrX 155992947 155993184 -6606746 + L1ME4a LINE L1 4900 5166 -980 2473 166 21 54 chrX 155993187 155993886 -6606044 + L1MB4 LINE L1 5103 5779 -399 1041 301 81 40 chrX 155993996 155994674 -6605256 + L1ME4a LINE L1 5313 6018 -103 705 189 98 6 chrX 155996030 155996194 -6603736 - MLT1A2 LTR MaLR -195 179 1 582 179 51 0 chrX 155996286 155996403 -6603527 + L1MB4 LINE L1 5756 5878 -302 1656 47 0 37 chrX 155996403 155996609 -6603321 + L1PA7 LINE L1 5933 6139 -15 2299 224 108 48 chrX 155998809 155999525 -6600405 - L1ME2 LINE L1 -10 6154 5396 6384 112 2 19 chrX 155999526 156000796 -6599134 - L1PA13 LINE L1 0 6163 4892 3286 61 0 2 chrX 156000796 156001198 -6598732 + L1PA6 LINE L1 5735 6135 -19 342 0 0 0 chrX 156001198 156001236 -6598694 + (TA)n Simple_repeat Simple_repeat 1 38 0 777 185 7 0 chrX 156001237 156001388 -6598542 - L1PA13 LINE L1 -1245 4901 4750 * 1056 169 6 0 chrX 156001384 156001561 -6598369 + L1P LINE L1 3669 3846 -2300 405 171 14 2 chrX 156001568 156001663 -6598267 - L1ME2 LINE L1 -803 5363 5271 268 268 175 0 chrX 156001663 156001760 -6598170 - L2 LINE L2 -580 2734 2621 1711 180 61 27 chrX 156002086 156002423 -6597507 - L1MC/D LINE L1 -743 5403 5279 2440 88 0 0 chrX 156002423 156002730 -6597200 - AluY SINE Alu -4 307 1 1711 180 61 27 chrX 156002730 156002853 -6597077 - L1MC/D LINE L1 -867 5279 5162 4623 194 20 65 chrX 156002868 156002912 -6597018 + L1MC3 LINE L1 5668 5712 -2073 1682 197 3 0 chrX 156002912 156003201 -6596729 + AluJo SINE Alu 1 290 -22 4623 194 20 65 chrX 156003201 156004160 -6595770 + L1MC3 LINE L1 5712 6618 -1167 1704 191 48 43 chrX 156004160 156004532 -6595398 + MLT1A2 LTR MaLR 1 374 0 4623 194 20 65 chrX 156004532 156004653 -6595277 + L1MC3 LINE L1 6618 6743 -1042 996 234 65 72 chrX 156006195 156006582 -6593348 + L1MD2 LINE L1 5950 6358 -1 2079 222 71 29 chrX 156007188 156007804 -6592126 + MLT1E1 LTR MaLR 13 654 0 2400 200 73 22 chrX 156007814 156008399 -6591531 + Charlie1 DNA MER1_type 2145 2759 -2 972 206 26 5 chrX 156058822 156059016 -6540914 - MER3 DNA MER1_type -11 198 1 2247 88 0 11 chrX 156059517 156059834 -6540096 + AluSg SINE Alu 1 314 0 826 207 14 50 chrX 156061382 156061604 -6538326 + L1MB5 LINE L1 5961 6174 0 250 268 45 36 chrX 156061755 156061867 -6538063 + MIR SINE MIR 38 150 -58 2321 105 0 3 chrX 156062058 156062363 -6537567 + AluSx SINE Alu 1 304 -8 800 257 26 0 chrX 156062509 156062735 -6537195 + MIR SINE MIR 31 262 0 180 186 23 0 chrX 156062933 156062976 -6536954 - MIR SINE MIR -134 128 85 210 313 139 0 chrX 156063237 156063352 -6536578 + L2 LINE L2 2241 2371 -943 1164 195 8 8 chrX 156063375 156063616 -6536314 - L1MC/D LINE L1 -1356 4790 4550 257 280 53 8 chrX 156063622 156063754 -6536176 + L2 LINE L2 1671 1808 -1506 382 311 63 44 chrX 156063760 156064265 -6535665 + L2 LINE L2 2291 2805 -509 1742 150 38 6 chrX 156064393 156064713 -6535217 + L1MB2 LINE L1 5842 6171 0 912 130 0 0 chrX 156065421 156065544 -6534386 + FLAM_C SINE Alu 1 123 -20 1543 176 55 7 chrX 156065564 156065836 -6534094 + AluJb SINE Alu 1 285 -27 21 0 0 0 chrX 156066096 156066117 -6533813 + AT_rich Low_complexity Low_complexity 1 21 0 2379 109 0 3 chrX 156066977 156067290 -6532640 - AluSx SINE Alu 0 312 1 239 267 40 27 chrX 156067374 156067449 -6532481 + MIR3 SINE MIR 88 163 -45 2093 200 86 19 chrX 156067694 156068160 -6531770 - MLT1D LTR MaLR -8 497 1 192 272 88 18 chrX 156068497 156068611 -6531319 + L2 LINE L2 2882 3003 -269 2226 178 65 17 chrX 156068642 156069121 -6530809 - L1MB5 LINE L1 -44 6130 5629 392 286 68 10 chrX 156069475 156069665 -6530265 + MIR SINE MIR 2 208 -54 1711 198 24 71 chrX 156070614 156071023 -6528907 + MLT1B LTR MaLR 1 390 0 2004 218 42 15 chrX 156071272 156071432 -6528498 + MLT1C LTR MaLR 1 155 -312 2120 154 122 8 chrX 156071432 156071816 -6528114 - MSTA LTR MaLR 0 428 1 2004 218 42 15 chrX 156071816 156072110 -6527820 + MLT1C LTR MaLR 155 467 0 667 209 26 0 chrX 156072641 156072721 -6527209 + L1ME1 LINE L1 5812 5888 -278 261 0 0 0 chrX 156072721 156072750 -6527180 + (TAA)n Simple_repeat Simple_repeat 2 30 0 667 209 26 0 chrX 156072750 156072822 -6527108 + L1ME1 LINE L1 5888 5968 -198 * 6715 168 26 20 chrX 156072814 156075367 -6524563 + L1M2 LINE L1 1638 4206 -2642 2179 93 7 0 chrX 156075369 156075648 -6524282 + AluSq SINE Alu 3 283 -30 734 138 0 0 chrX 156075648 156075757 -6524173 - AluSp/q SINE Alu -15 298 190 4972 146 19 17 chrX 156075857 156076352 -6523578 + L1M2 LINE L1 4744 5243 -1605 2370 68 20 3 chrX 156076352 156076646 -6523284 + AluY SINE Alu 1 299 -12 4972 146 19 17 chrX 156076646 156077031 -6522899 + L1M2 LINE L1 5243 5626 -1222 1331 60 51 74 chrX 156077027 156077107 -6522823 + L1P LINE L1 3283 3363 -2783 * 2351 74 0 17 chrX 156077107 156077404 -6522526 + AluSg SINE Alu 1 292 -18 180 0 0 0 chrX 156077404 156077424 -6522506 + (GA)n Simple_repeat Simple_repeat 2 21 0 1331 60 51 74 chrX 156077424 156077559 -6522371 + L1P LINE L1 3361 3494 -2652 986 175 57 39 chrX 156077687 156078127 -6521803 + MLT1D LTR MaLR 1 499 -6 267 191 59 0 chrX 156078166 156078234 -6521696 - L2 LINE L2 -10 3303 3232 479 163 20 0 chrX 156078298 156078396 -6521534 + GA-rich Low_complexity Low_complexity 1 100 0 264 77 0 0 chrX 156079064 156079103 -6520827 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1908 170 81 26 chrX 156079146 156079576 -6520354 + MLT1C LTR MaLR 6 459 -8 265 297 45 10 chrX 156079859 156079990 -6519940 + L1M2 LINE L1 5437 5577 -577 363 157 30 0 chrX 156080284 156080356 -6519574 + L1MB4 LINE L1 6076 6149 -31 1327 155 14 5 chrX 156080356 156080569 -6519361 + AluJb SINE Alu 84 298 -14 1346 179 4 25 chrX 156080756 156080996 -6518934 + AluJo SINE Alu 1 235 -77 200 139 0 23 chrX 156081013 156081056 -6518874 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 2062 140 0 7 chrX 156081379 156081686 -6518244 + AluJb SINE Alu 1 305 -7 752 157 26 46 chrX 156081806 156081959 -6517971 + L1MC3 LINE L1 7540 7689 -96 814 161 0 15 chrX 156081992 156082122 -6517808 + FLAM_C SINE Alu 2 129 -14 1483 138 28 0 chrX 156082133 156082387 -6517543 + L1MA4 LINE L1 6029 6289 -11 457 146 34 22 chrX 156082404 156082493 -6517437 + L1MC3 LINE L1 7681 7770 -15 2188 97 6 141 chrX 156082634 156082668 -6517262 - L1MA5A LINE L1 0 6297 6260 1745 181 0 3 chrX 156082668 156082955 -6516975 + AluJb SINE Alu 1 286 -26 2188 97 6 141 chrX 156082955 156083022 -6516908 - L1MA5A LINE L1 -37 6260 6186 2108 99 0 31 chrX 156083022 156083152 -6516778 + AluSx SINE Alu 1 133 -195 2546 74 0 0 chrX 156083152 156083461 -6516469 + AluY SINE Alu 1 309 -2 2108 99 0 31 chrX 156083461 156083667 -6516263 + AluSx SINE Alu 133 328 0 2188 97 6 141 chrX 156083667 156083785 -6516145 - L1MA5A LINE L1 -111 6186 6054 1968 122 22 0 chrX 156083785 156084055 -6515875 + AluSx SINE Alu 1 276 -36 2188 97 6 141 chrX 156084055 156084306 -6515624 - L1MA5A LINE L1 -243 6054 5888 338 297 63 0 chrX 156084796 156084971 -6514959 + L2 LINE L2 2401 2586 -728 610 153 10 0 chrX 156085970 156086068 -6513862 + AluSg/x SINE Alu 126 224 -88 2424 188 95 42 chrX 156087020 156087490 -6512440 + L1ME2 LINE L1 5486 6001 -163 1891 176 7 0 chrX 156087490 156087791 -6512139 + AluJb SINE Alu 1 303 -9 2424 188 95 42 chrX 156087791 156087965 -6511965 + L1ME2 LINE L1 6001 6164 0 429 59 0 0 chrX 156088149 156088200 -6511730 + MER66A LTR ERV1 287 337 -141 1916 213 18 8 chrX 156088733 156089118 -6510812 + L1MB5 LINE L1 5780 6168 -6 207 0 0 0 chrX 156090099 156090122 -6509808 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 2856 184 74 31 chrX 156090704 156091167 -6508763 - L1MD2 LINE L1 -2 6357 5857 2365 108 51 20 chrX 156091167 156091520 -6508410 + THE1B LTR MaLR 1 364 0 2856 184 74 31 chrX 156091520 156091702 -6508228 - L1MD2 LINE L1 -502 5857 5684 453 278 107 27 chrX 156091706 156091893 -6508037 - HAL1b LINE L1 -780 568 367 480 248 23 38 chrX 156092086 156092219 -6507711 - L2 LINE L2 -1 3312 3182 840 146 0 29 chrX 156092540 156092677 -6507253 + FLAM_C SINE Alu 1 133 0 231 278 125 46 chrX 156092858 156093074 -6506856 + L1M4 LINE L1 4031 4263 -1883 1884 159 17 0 chrX 156093079 156093368 -6506562 + AluJo SINE Alu 1 294 -18 262 179 0 0 chrX 156093454 156093493 -6506437 + Alu SINE Alu 246 284 -18 429 20 0 0 chrX 156093493 156093543 -6506387 + (CA)n Simple_repeat Simple_repeat 2 51 0 2378 108 0 0 chrX 156093593 156093899 -6506031 + AluSq SINE Alu 1 306 -7 258 156 0 0 chrX 156094071 156094116 -6505814 + A-rich Low_complexity Low_complexity 1 45 0 4063 163 45 32 chrX 156095106 156095163 -6504767 + L1MB7 LINE L1 5335 5390 -794 1860 140 3 56 chrX 156095163 156095485 -6504445 + AluJb SINE Alu 1 305 -7 4063 163 45 32 chrX 156095485 156096236 -6503694 + L1MB7 LINE L1 5390 6153 -31 221 306 81 9 chrX 156097027 156097138 -6502792 + L2 LINE L2 3145 3263 -9 2570 50 0 3 chrX 156097353 156097651 -6502279 - AluSc SINE Alu -10 299 3 270 240 10 52 chrX 156097868 156097964 -6501966 + L1ME LINE L1 5660 5751 -370 662 105 0 6 chrX 156097980 156098229 -6501701 + AluSq SINE Alu 1 299 -14 2314 76 6 58 chrX 156098427 156098757 -6501173 + AluSp SINE Alu 1 313 0 261 264 42 109 chrX 156099103 156099342 -6500588 + L1ME LINE L1 561 783 -5336 * 892 258 52 21 chrX 156099327 156099656 -6500274 + L1ME LINE L1 5302 5640 -505 559 178 52 30 chrX 156099656 156099791 -6500139 - Charlie1 DNA MER1_type -1 2760 2623 991 202 28 46 chrX 156099798 156099934 -6499996 - Charlie1 DNA MER1_type -2547 214 77 1571 180 3 18 chrX 156099934 156100218 -6499712 + AluJb SINE Alu 1 280 -32 186 103 0 0 chrX 156100218 156100247 -6499683 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 991 202 28 46 chrX 156100247 156100327 -6499603 - Charlie1 DNA MER1_type -2682 79 1 359 272 0 0 chrX 156100345 156100427 -6499503 + L1ME LINE L1 5662 5745 -408 1033 116 7 0 chrX 156100527 156100682 -6499248 - L1MB5 LINE L1 -101 6073 5918 657 250 0 6 chrX 156100735 156100895 -6499035 - MIR SINE MIR -24 238 80 2150 142 0 3 chrX 156100992 156101015 -6498915 - AluJb SINE Alu -3 309 287 279 0 0 0 chrX 156101015 156101046 -6498884 + (TG)n Simple_repeat Simple_repeat 2 32 0 2150 142 0 3 chrX 156101046 156101332 -6498598 - AluJb SINE Alu -25 287 1 1951 143 0 3 chrX 156101702 156101989 -6497941 - AluSx SINE Alu -26 286 1 23 33 0 0 chrX 156102049 156102079 -6497851 + AT_rich Low_complexity Low_complexity 1 30 0 2376 107 7 0 chrX 156102157 156102467 -6497463 - AluSx SINE Alu 0 312 1 353 304 105 28 chrX 156102536 156102717 -6497213 - L1ME LINE L1 -647 5517 5323 833 147 0 15 chrX 156102918 156103054 -6496876 - AluJo SINE Alu -178 134 1 1285 165 9 26 chrX 156103314 156103544 -6496386 + AluJo SINE Alu 85 310 -2 690 276 22 13 chrX 156103552 156103777 -6496153 + MIR SINE MIR 25 251 -11 2195 84 21 3 chrX 156103810 156104094 -6495836 - AluSg SINE Alu -21 289 1 252 149 0 0 chrX 156104106 156104153 -6495777 + (T)n Simple_repeat Simple_repeat 1 47 0 1911 151 11 0 chrX 156104571 156104870 -6495060 - AluSx SINE Alu 0 302 1 353 81 16 0 chrX 156105006 156105068 -6494862 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2221 69 4 7 chrX 156105070 156105347 -6494583 - AluSc SINE Alu -31 278 3 270 240 10 52 chrX 156105564 156105660 -6494270 + L1MB3 LINE L1 5660 5751 -370 662 117 0 6 chrX 156105676 156105925 -6494005 + AluSq SINE Alu 1 299 -14 2249 79 6 61 chrX 156106123 156106453 -6493477 + AluSp SINE Alu 1 312 -1 261 264 42 109 chrX 156106799 156107038 -6492892 + L1ME3A LINE L1 858 1080 -5336 * 892 258 52 21 chrX 156107023 156107352 -6492578 + L1ME3A LINE L1 5599 5937 -505 559 178 52 30 chrX 156107352 156107487 -6492443 - Charlie1 DNA MER1_type -1 2760 2623 * 944 211 47 43 chrX 156107480 156107630 -6492300 - Charlie1 DNA MER1_type -2528 233 85 1571 180 3 18 chrX 156107630 156107914 -6492016 + AluJb SINE Alu 1 280 -32 186 103 0 0 chrX 156107914 156107943 -6491987 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 944 211 47 43 chrX 156107943 156108023 -6491907 - Charlie1 DNA MER1_type -2675 86 1 766 242 84 24 chrX 156108029 156108266 -6491664 + L1ME3A LINE L1 5957 6201 -249 1619 181 7 3 chrX 156108374 156108673 -6491257 + L1MB3 LINE L1 5881 6180 -3 2162 101 0 24 chrX 156108684 156108981 -6490949 + AluSx SINE Alu 1 290 -22 879 300 52 39 chrX 156110232 156110595 -6489335 - LTR33 LTR ERVL -131 390 23 610 305 101 12 chrX 156110629 156111036 -6488894 - HAL1 LINE L1 -837 1670 1228 203 262 0 0 chrX 156111863 156111924 -6488006 + A-rich Low_complexity Low_complexity 1 61 0 2266 99 0 0 chrX 156112066 156112359 -6487571 + AluSg SINE Alu 1 293 -17 1140 142 0 0 chrX 156112362 156112729 -6487201 + (TA)n Simple_repeat Simple_repeat 1 367 0 301 322 0 0 chrX 156112740 156112830 -6487100 - L1MC4 LINE L1 -1339 6703 6614 * 312 230 0 24 chrX 156112752 156112878 -6487052 + L1MC4 LINE L1 1995 6983 -1339 317 255 0 43 chrX 156112898 156112992 -6486938 + L1MC4 LINE L1 6614 6703 -1339 327 203 0 0 chrX 156112993 156113062 -6486868 + (TA)n Simple_repeat Simple_repeat 2 70 0 305 287 23 0 chrX 156113067 156113154 -6486776 + L1MC4 LINE L1 6615 6703 -1339 * 310 176 29 15 chrX 156113130 156113198 -6486732 + L1MEd LINE L1 1995 2063 -4363 291 157 0 0 chrX 156113201 156113252 -6486678 + (TA)n Simple_repeat Simple_repeat 2 52 0 361 250 11 0 chrX 156113255 156113343 -6486587 + L1MC4 LINE L1 6615 6703 -1339 313 296 0 31 chrX 156113287 156113385 -6486545 - L1MC4 LINE L1 -1339 6703 6609 * 204 179 0 0 chrX 156113588 156113627 -6486303 + T-rich Low_complexity Low_complexity 76 114 0 1777 169 0 38 chrX 156113630 156113950 -6485980 - AluJb SINE Alu -2 310 3 232 139 0 0 chrX 156113982 156114018 -6485912 + L1MA5 LINE L1 6062 6097 -203 1185 170 12 24 chrX 156114124 156114371 -6485559 - SVA Other Other -710 676 433 2404 57 11 3 chrX 156114385 156114667 -6485263 - AluSp SINE Alu -29 284 1 1440 123 0 0 chrX 156114667 156114879 -6485051 + L1MA5 LINE L1 6087 6298 -2 1517 152 5 0 chrX 156115078 156115388 -6484542 - L1M2 LINE L1 -743 5403 5126 4209 157 8 35 chrX 156115391 156116337 -6483593 - L1MB7 LINE L1 -166 6018 5098 1020 133 61 39 chrX 156116887 156117067 -6482863 - AluJb SINE Alu -21 291 108 2066 158 59 29 chrX 156117069 156117606 -6482324 - MLT2A2 LTR ERVL -2 552 3 616 198 9 0 chrX 156117607 156117718 -6482212 - AluJb SINE Alu -199 113 2 265 227 106 0 chrX 156117729 156117795 -6482135 + L2 LINE L2 2987 3059 -213 455 264 19 39 chrX 156117977 156118132 -6481798 + MIR SINE MIR 71 222 -40 22 0 0 0 chrX 156118177 156118199 -6481731 + AT_rich Low_complexity Low_complexity 1 22 0 1628 252 43 16 chrX 156118438 156119014 -6480916 + L1M4 LINE L1 4329 4920 -1226 1027 273 44 50 chrX 156119094 156119137 -6480793 - L2 LINE L2 -1128 2186 2144 2547 155 17 5 chrX 156119137 156119556 -6480374 + MSTB LTR MaLR 3 426 0 1027 273 44 50 chrX 156119556 156119888 -6480042 - L2 LINE L2 -1170 2144 1812 2370 94 3 0 chrX 156119888 156120185 -6479745 + AluSp SINE Alu 1 298 -15 1027 273 44 50 chrX 156120185 156120351 -6479579 - L2 LINE L2 -1502 1812 1647 725 268 26 17 chrX 156120362 156120593 -6479337 - MIR SINE MIR -28 234 2 2355 139 56 30 chrX 156120767 156121284 -6478646 + MLT2A2 LTR ERVL 1 554 0 183 80 0 0 chrX 156121432 156121457 -6478473 + (T)n Simple_repeat Simple_repeat 1 25 0 250 248 64 72 chrX 156121473 156121598 -6478332 + MIR3 SINE MIR 14 137 -71 916 171 0 13 chrX 156121748 156121906 -6478024 - FRAM SINE Alu -3 173 18 1031 333 22 15 chrX 156121911 156122371 -6477559 - L2 LINE L2 -24 3289 2827 3218 182 21 13 chrX 156122383 156122992 -6476938 + MLT1E2 LTR MaLR 13 626 0 1129 254 80 8 chrX 156122992 156123382 -6476548 - L2 LINE L2 -521 2793 2376 957 35 0 0 chrX 156124020 156124135 -6475795 - L1PA5 LINE L1 -3 6151 6037 750 177 58 119 chrX 156124623 156124883 -6475047 + L2 LINE L2 527 770 -2544 1004 221 207 14 chrX 156124884 156125246 -6474684 - LTR50 LTR ERVL 0 795 364 359 221 42 0 chrX 156125219 156125314 -6474616 - LTR50 LTR ERVL -242 553 455 * 1592 256 105 16 chrX 156125376 156125949 -6473981 + L2 LINE L2 2019 2642 -672 1183 150 4 49 chrX 156126256 156126482 -6473448 + MER20 DNA MER1_type 3 218 -1 1185 292 13 0 chrX 156126651 156127001 -6472929 + L2 LINE L2 2657 3009 -304 22 0 0 0 chrX 156127001 156127023 -6472907 + AT_rich Low_complexity Low_complexity 1 22 0 2267 146 40 5 chrX 156127195 156127573 -6472357 - L1PB3 LINE L1 -8 6146 5756 15565 175 16 19 chrX 156127573 156131329 -6468601 - L1PA15 LINE L1 -302 5863 2122 277 282 60 26 chrX 156131435 156131552 -6468378 + L1ME3A LINE L1 5999 6119 -51 420 203 13 0 chrX 156131552 156131631 -6468299 + FLAM SINE Alu 45 124 -19 236 53 26 0 chrX 156131631 156131669 -6468261 + (CAA)n Simple_repeat Simple_repeat 2 40 0 314 276 109 45 chrX 156131751 156131907 -6468023 + L1ME4a LINE L1 5945 6110 -11 579 207 61 30 chrX 156131914 156132112 -6467818 - L1ME LINE L1 -665 5499 5296 1170 131 123 156 chrX 156132509 156132868 -6467062 + MER7A DNA MER2_type 2 346 0 1001 171 8 81 chrX 156132885 156133119 -6466811 + MER20 DNA MER1_type 3 219 0 1410 195 96 4 chrX 156133147 156133419 -6466511 + AluJo SINE Alu 1 297 -15 2097 117 0 0 chrX 156133426 156133709 -6466221 + AluSq SINE Alu 1 283 -30 386 19 0 19 chrX 156133712 156133764 -6466166 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 573 259 42 12 chrX 156134269 156134435 -6465495 + MLT1G LTR MaLR 1 171 -419 2029 169 39 0 chrX 156134437 156134891 -6465039 + L1MB3 LINE L1 5638 6176 -7 1373 242 156 6 chrX 156134918 156135278 -6464652 + MLT1G LTR MaLR 176 589 -1 234 197 28 99 chrX 156135631 156135702 -6464228 - MER119 DNA MER1_type -29 554 489 459 97 0 0 chrX 156136071 156136133 -6463797 + MER41B LTR ERV1 479 540 -95 2462 29 7 4 chrX 156136133 156136449 -6463481 + AluY SINE Alu 1 317 0 2346 90 0 0 chrX 156136459 156136748 -6463182 + AluSq SINE Alu 1 289 -24 27 0 0 0 chrX 156136748 156136775 -6463155 + AT_rich Low_complexity Low_complexity 1 27 0 1906 210 33 55 chrX 156137442 156137956 -6461974 - MLT1D LTR MaLR -2 503 1 2283 97 0 28 chrX 156138192 156138513 -6461417 + AluSp SINE Alu 1 312 -1 2729 45 0 0 chrX 156138587 156138897 -6461033 + AluY SINE Alu 1 310 -1 1965 87 109 7 chrX 156139102 156139378 -6460552 + AluSq SINE Alu 1 304 -9 273 96 136 0 chrX 156139877 156139935 -6459995 - L1MB7 LINE L1 0 6178 6108 1332 149 11 34 chrX 156139945 156139983 -6459947 - L1MB5 LINE L1 -1 6173 6136 2251 112 0 0 chrX 156139983 156140278 -6459652 - AluSx SINE Alu -17 295 1 1332 149 11 34 chrX 156140278 156140501 -6459429 - L1MB5 LINE L1 -38 6136 5918 657 250 0 6 chrX 156140554 156140714 -6459216 - MIR SINE MIR -24 238 80 2187 132 0 3 chrX 156140811 156140834 -6459096 - AluJb SINE Alu -3 309 287 261 0 0 0 chrX 156140834 156140863 -6459067 + (TG)n Simple_repeat Simple_repeat 2 30 0 2187 132 0 3 chrX 156140863 156141149 -6458781 - AluJb SINE Alu -25 287 1 204 235 98 5 chrX 156141243 156141330 -6458600 + MIR SINE MIR 41 145 -63 2352 96 3 0 chrX 156142006 156142307 -6457623 + AluY SINE Alu 1 302 -9 31 36 0 18 chrX 156142359 156142378 -6457552 + AT_rich Low_complexity Low_complexity 1 19 -36 2386 73 0 0 chrX 156142378 156142665 -6457265 + AluSg SINE Alu 1 287 -23 31 36 0 18 chrX 156142665 156142701 -6457229 + AT_rich Low_complexity Low_complexity 19 55 0 207 298 317 0 chrX 156142720 156142881 -6457049 + MIR SINE MIR 45 256 -6 499 235 30 8 chrX 156143031 156143163 -6456767 + MIR SINE MIR 9 143 -119 442 193 145 21 chrX 156143476 156143621 -6456309 + L2 LINE L2 3112 3274 -39 270 0 0 0 chrX 156143787 156143817 -6456113 + (TG)n Simple_repeat Simple_repeat 2 31 0 513 207 125 0 chrX 156144018 156144178 -6455752 - MER5A DNA MER1_type -3 186 4 27 49 0 0 chrX 156144736 156144777 -6455153 + GC_rich Low_complexity Low_complexity 1 41 0 30 0 0 0 chrX 156144964 156144994 -6454936 + GC_rich Low_complexity Low_complexity 1 30 0 203 307 80 0 chrX 156146281 156146369 -6453561 - MIR SINE MIR -3 259 165 1496 215 61 0 chrX 156146998 156147310 -6452620 + MER58B DNA MER1_type 11 341 0 29 0 0 0 chrX 156147800 156147829 -6452101 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chrX 156148294 156148326 -6451604 + AT_rich Low_complexity Low_complexity 1 32 0 465 198 0 0 chrX 156148380 156148461 -6451469 + U3 snRNA snRNA 1 81 -136 798 218 189 75 chrX 156151234 156151730 -6448200 + L2 LINE L2 2343 2895 -419 187 304 0 0 chrX 156151959 156152005 -6447925 + MER5B DNA MER1_type 4 49 -129 3073 151 28 11 chrX 156152021 156152563 -6447367 - L1MB5 LINE L1 -3 6171 5621 261 359 10 19 chrX 156152563 156152666 -6447264 - MER5B DNA MER1_type -34 144 43 1193 202 98 50 chrX 156152679 156152822 -6447108 + MER58B DNA MER1_type 9 144 -2276 1693 163 4 0 chrX 156152822 156153092 -6446838 + AluJo SINE Alu 39 309 -3 1193 202 98 50 chrX 156153092 156153265 -6446665 + MER58B DNA MER1_type 144 340 -1 489 212 18 9 chrX 156153271 156153384 -6446546 + L2 LINE L2 1927 2040 -1274 351 250 28 37 chrX 156153512 156153620 -6446310 + MIR3 SINE MIR 79 185 -23 302 313 80 33 chrX 156153628 156153828 -6446102 - MIR SINE MIR -41 221 19 2273 123 0 0 chrX 156154044 156154346 -6445584 + AluSx SINE Alu 1 302 -10 1273 180 213 26 chrX 156154367 156154756 -6445174 - MLT1C LTR MaLR 0 467 6 215 211 0 0 chrX 156154769 156154807 -6445123 - MIR SINE MIR -111 151 114 789 245 12 20 chrX 156154929 156155182 -6444748 + L1M4 LINE L1 4936 5186 -960 1611 194 0 25 chrX 156155187 156155352 -6444578 + AluJo SINE Alu 6 163 -149 2411 162 49 2 chrX 156155352 156155759 -6444171 - MSTB LTR MaLR 0 426 1 1611 194 0 25 chrX 156155759 156155876 -6444054 + AluJo SINE Alu 163 281 -31 467 199 134 16 chrX 156155892 156156078 -6443852 + L1MB4 LINE L1 5121 5328 -818 975 120 0 0 chrX 156156078 156156203 -6443727 + FLAM_C SINE Alu 1 125 -18 4260 154 50 25 chrX 156156203 156156363 -6443567 + L1MB4 LINE L1 5314 5469 -711 2035 133 10 10 chrX 156156363 156156671 -6443259 - AluSq SINE Alu -5 308 1 4260 154 50 25 chrX 156156671 156157356 -6442574 + L1MB4 LINE L1 5469 6180 0 1493 154 143 0 chrX 156157707 156157966 -6441964 - AluJb SINE Alu -16 296 1 1071 116 7 0 chrX 156157969 156158169 -6441761 - FRAM SINE Alu 0 200 1 283 318 84 42 chrX 156159218 156159432 -6440498 + L2 LINE L2 2557 2779 -535 3494 142 31 87 chrX 156159741 156159974 -6439956 + L1MB7 LINE L1 5433 5678 -506 259 81 0 0 chrX 156159974 156160011 -6439919 + AluJb SINE Alu 1 37 -264 2209 113 3 3 chrX 156160011 156160311 -6439619 - AluSx SINE Alu -12 300 1 1534 169 108 4 chrX 156160311 156160571 -6439359 + AluJb SINE Alu 26 312 0 3494 142 31 87 chrX 156160571 156161037 -6438893 + L1MB7 LINE L1 5676 6167 -17 1891 157 0 17 chrX 156161037 156161337 -6438593 + AluJo SINE Alu 1 295 -17 198 0 0 0 chrX 156161337 156161359 -6438571 + (TA)n Simple_repeat Simple_repeat 2 23 0 3494 142 31 87 chrX 156161359 156161402 -6438528 + L1MB7 LINE L1 6165 6171 -13 971 196 42 33 chrX 156161404 156161472 -6438458 - MIR SINE MIR -33 229 163 1760 176 44 75 chrX 156161472 156161533 -6438397 + MLT1A2 LTR MaLR 1 62 -312 2314 110 0 7 chrX 156161533 156161843 -6438087 + AluSg SINE Alu 3 310 0 1760 176 44 75 chrX 156161843 156162167 -6437763 + MLT1A2 LTR MaLR 62 374 0 971 196 42 33 chrX 156162167 156162312 -6437618 - MIR SINE MIR -99 163 14 799 217 159 10 chrX 156162902 156163109 -6436821 + MIR SINE MIR 10 247 -15 2877 123 24 0 chrX 156163203 156163619 -6436311 + MSTC LTR MaLR 1 426 -2 381 281 63 124 chrX 156163699 156163873 -6436057 + L3 LINE CR1 1011 1194 -383 2283 135 0 0 chrX 156163873 156164185 -6435745 - AluSx SINE Alu 0 312 1 381 281 63 124 chrX 156164185 156164390 -6435540 + L3 LINE CR1 1194 1358 -219 1686 177 3 37 chrX 156164390 156164690 -6435240 - AluJo SINE Alu -19 293 4 381 281 63 124 chrX 156164690 156164786 -6435144 + L3 LINE CR1 1358 1458 -119 300 21 43 0 chrX 156165267 156165314 -6434616 - L1PA3 LINE L1 -4 6151 6103 2272 109 0 13 chrX 156165354 156165667 -6434263 + AluSg SINE Alu 2 310 0 404 248 96 8 chrX 156165772 156165897 -6434033 - MIR3 SINE MIR -37 171 36 2765 144 20 40 chrX 156167095 156167644 -6432286 + L1MB7 LINE L1 5600 6137 -47 1533 172 0 40 chrX 156167679 156167867 -6432063 - L1MB3 LINE L1 -20 6163 5969 216 0 0 0 chrX 156167867 156167891 -6432039 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2037 118 0 28 chrX 156167891 156168178 -6431752 - AluSx SINE Alu -31 281 3 1533 172 0 40 chrX 156168178 156168314 -6431616 - L1MB3 LINE L1 -212 5971 5851 1714 168 0 34 chrX 156168319 156168610 -6431320 + AluJb SINE Alu 1 281 -31 2370 95 0 0 chrX 156168610 156168905 -6431025 - AluSc SINE Alu -13 296 1 188 61 61 0 chrX 156168920 156168953 -6430977 + A-rich Low_complexity Low_complexity 2 36 0 301 122 19 51 chrX 156169034 156169247 -6430683 + AluJo SINE Alu 1 295 -7 288 0 0 0 chrX 156169250 156169282 -6430648 + (CA)n Simple_repeat Simple_repeat 2 33 0 612 91 0 0 chrX 156169282 156169370 -6430560 + (TA)n Simple_repeat Simple_repeat 2 89 0 1660 177 30 0 chrX 156169383 156169649 -6430281 + AluJo SINE Alu 14 287 -25 414 350 45 50 chrX 156170019 156170067 -6429863 + MIR SINE MIR 22 69 -193 2424 193 49 12 chrX 156170067 156170553 -6429377 - MLT1D LTR MaLR -1 504 1 414 350 45 50 chrX 156170553 156170724 -6429206 + MIR SINE MIR 69 240 -22 184 362 32 11 chrX 156170749 156170843 -6429087 - L2 LINE L2 -250 3022 2927 853 134 0 37 chrX 156170844 156170978 -6428952 + FLAM_C SINE Alu 1 129 -14 1008 190 15 10 chrX 156171683 156171878 -6428052 + MLT1D LTR MaLR 1 196 -309 2252 83 7 0 chrX 156171878 156172154 -6427776 + AluSg SINE Alu 1 278 -32 1130 198 43 43 chrX 156172194 156172517 -6427413 + MLT1D LTR MaLR 181 503 -2 1052 215 123 35 chrX 156173341 156173437 -6426493 + MER2 DNA MER2_type 1 87 -257 1755 172 41 0 chrX 156173437 156173727 -6426203 - AluJb SINE Alu -10 302 1 1052 215 123 35 chrX 156173727 156173873 -6426057 + MER2 DNA MER2_type 87 280 -64 2312 97 0 34 chrX 156173873 156173908 -6426022 - AluSq SINE Alu -3 310 275 285 29 0 0 chrX 156173908 156173942 -6425988 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2312 97 0 34 chrX 156173942 156174227 -6425703 - AluSq SINE Alu -38 275 1 1052 215 123 35 chrX 156174227 156174299 -6425631 + MER2 DNA MER2_type 280 344 0 764 201 31 1 chrX 156174331 156174494 -6425436 - MLT1C LTR MaLR -124 343 186 827 136 17 0 chrX 156174518 156174636 -6425294 - FLAM_C SINE Alu -12 131 12 844 190 23 6 chrX 156174648 156174822 -6425108 - MLT1C LTR MaLR -290 177 1 1933 174 0 6 chrX 156174947 156175258 -6424672 + AluJo SINE Alu 1 309 -3 718 142 0 0 chrX 156175260 156175380 -6424550 + L1MB8 LINE L1 6059 6178 0 2348 166 95 4 chrX 156175693 156175787 -6424143 - MLT1D LTR MaLR 0 505 421 1904 109 25 3 chrX 156175787 156176072 -6423858 - AluSg SINE Alu -19 291 1 2348 166 95 4 chrX 156176072 156176222 -6423708 - MLT1D LTR MaLR -84 421 286 2555 63 0 0 chrX 156176222 156176521 -6423409 - AluY SINE Alu -12 299 1 2348 166 95 4 chrX 156176521 156176738 -6423192 - MLT1D LTR MaLR -219 286 1 2372 103 0 3 chrX 156176758 156177070 -6422860 - AluSq SINE Alu -2 311 1 1889 162 0 17 chrX 156177155 156177452 -6422478 + AluJb SINE Alu 20 311 -1 339 360 57 33 chrX 156177724 156177935 -6421995 - L3b LINE CR1 -204 1379 1164 429 325 38 6 chrX 156178127 156178287 -6421643 + MIR3 SINE MIR 3 167 -41 2197 127 0 7 chrX 156178292 156178591 -6421339 + AluSx SINE Alu 1 297 -15 1696 167 58 0 chrX 156178612 156178888 -6421042 + AluJo SINE Alu 11 302 -10 745 169 33 54 chrX 156179091 156179275 -6420655 + L1M4 LINE L1 4984 5163 -983 2293 127 0 0 chrX 156179281 156179588 -6420342 + AluSx SINE Alu 1 307 -5 1720 180 0 47 chrX 156179683 156180044 -6419886 + L1MB8 LINE L1 4777 5120 -1026 1914 189 6 4 chrX 156180044 156180396 -6419534 + MLT2B1 LTR ERVL 1 446 -108 672 324 110 6 chrX 156180495 156180813 -6419117 + L3 LINE CR1 1212 1562 -15 1233 218 20 14 chrX 156181396 156181690 -6418240 + L1MB8 LINE L1 5881 6176 -2 203 233 42 100 chrX 156182197 156182317 -6417613 + L2 LINE L2 3076 3188 -84 541 195 86 0 chrX 156182507 156182635 -6417295 - L1MB7 LINE L1 -9 6175 6037 233 204 61 106 chrX 156183145 156183277 -6416653 - L2 LINE L2 -8 3264 3139 2570 179 73 17 chrX 156183280 156183346 -6416584 - MLT1D LTR MaLR 0 505 444 1848 171 0 19 chrX 156183346 156183661 -6416269 - AluJo SINE Alu -3 309 1 2570 179 73 17 chrX 156183661 156184070 -6415860 - MLT1D LTR MaLR -61 444 3 803 238 0 0 chrX 156184357 156184534 -6415396 + FAM SINE Alu 1 52 0 4852 177 60 101 chrX 156184646 156184726 -6415204 - L1MD3 LINE L1 0 8041 7959 1715 164 7 28 chrX 156184726 156185043 -6414887 + AluJo SINE Alu 1 311 0 4852 177 60 101 chrX 156185043 156185387 -6414543 - L1MD3 LINE L1 -82 7959 7603 228 35 0 0 chrX 156185387 156185416 -6414514 + (CAT)n Simple_repeat Simple_repeat 1 29 0 4852 177 60 101 chrX 156185416 156186433 -6413497 - L1MD3 LINE L1 -438 7603 6671 866 159 8 147 chrX 156186436 156186597 -6413333 + MLT1A1 LTR MaLR 1 114 -251 2449 100 0 0 chrX 156186597 156186907 -6413023 + AluSg SINE Alu 1 310 0 866 159 8 147 chrX 156186907 156187003 -6412927 + MLT1A1 LTR MaLR 114 222 -143 363 257 21 21 chrX 156187003 156187143 -6412787 - L1MC4a LINE L1 -1225 6583 6444 267 229 33 0 chrX 156189858 156189919 -6410011 + L1MC5 LINE L1 7319 7381 -580 322 231 100 119 chrX 156189956 156190054 -6409876 - L2 LINE L2 0 3272 3176 2246 92 3 0 chrX 156190054 156190379 -6409551 + AluSg SINE Alu 1 326 0 322 231 100 119 chrX 156190379 156190439 -6409491 - L2 LINE L2 -96 3176 3116 979 193 6 0 chrX 156190577 156190753 -6409177 - MER5A DNA MER1_type 0 189 13 2038 188 92 38 chrX 156190889 156191368 -6408562 - MLT1D LTR MaLR 0 505 1 541 371 55 0 chrX 156191393 156191630 -6408300 - MIR SINE MIR 0 262 13 528 211 10 0 chrX 156192149 156192253 -6407677 + MIR SINE MIR 59 163 -99 2058 143 7 0 chrX 156192271 156192564 -6407366 + AluSq SINE Alu 1 295 -18 468 0 0 0 chrX 156192940 156192992 -6406938 + (TG)n Simple_repeat Simple_repeat 2 53 0 597 181 0 0 chrX 156193040 156193134 -6406796 - AluJ/FLAM SINE Alu -217 95 2 1196 236 133 31 chrX 156193635 156194050 -6405880 - MLT1D LTR MaLR -9 496 40 226 183 111 16 chrX 156194324 156194395 -6405535 + MIR SINE MIR 77 145 -63 2157 134 3 10 chrX 156194513 156194819 -6405111 + AluJb SINE Alu 1 304 -8 1499 170 28 48 chrX 156195288 156195696 -6404234 - AluJo SINE Alu 0 402 1 440 213 25 10 chrX 156196453 156196567 -6403363 + MIR3 SINE MIR 33 155 -53 280 309 45 36 chrX 156196579 156196689 -6403241 - L2 LINE L2 -1 3312 3202 186 71 0 0 chrX 156196849 156196877 -6403053 + (T)n Simple_repeat Simple_repeat 1 28 0 3645 159 16 31 chrX 156196880 156197214 -6402716 - L1MB5 LINE L1 -13 6161 5841 1626 156 12 94 chrX 156197214 156197421 -6402509 - AluJo SINE Alu -9 303 131 2273 104 0 10 chrX 156197421 156197720 -6402210 + AluSq SINE Alu 1 296 -17 1626 156 12 94 chrX 156197720 156197840 -6402090 - AluJo SINE Alu -181 131 3 3645 159 16 31 chrX 156197840 156198189 -6401741 - L1MB5 LINE L1 -333 5841 5488 280 203 0 43 chrX 156198800 156198869 -6401061 + L2 LINE L2 3247 3312 -1 2009 157 0 3 chrX 156199388 156199694 -6400236 + AluJo SINE Alu 1 305 -7 359 329 12 12 chrX 156200023 156200187 -6399743 + CT-rich Low_complexity Low_complexity 1 164 0 837 114 9 0 chrX 156200876 156201018 -6398912 - FLAM_C SINE Alu 0 149 7 315 315 39 8 chrX 156201023 156201153 -6398777 + MIR3 SINE MIR 66 199 -9 754 274 11 5 chrX 156201272 156201458 -6398472 + MER5A DNA MER1_type 2 188 -1 419 52 17 0 chrX 156201560 156201618 -6398312 + (CA)n Simple_repeat Simple_repeat 1 59 0 553 133 144 0 chrX 156201717 156201807 -6398123 - U6 snRNA snRNA -4 103 1 510 282 65 53 chrX 156201813 156202330 -6397600 + L1ME LINE L1 5136 5654 -512 978 234 36 43 chrX 156202357 156202686 -6397244 - MLT1D LTR MaLR -6 499 173 1737 159 135 19 chrX 156202697 156203111 -6396819 + MLT1C LTR MaLR 6 467 0 698 181 34 0 chrX 156203130 156203279 -6396651 - MLT1D LTR MaLR -351 154 1 360 0 0 0 chrX 156203503 156203543 -6396387 + (CA)n Simple_repeat Simple_repeat 2 41 0 252 0 0 0 chrX 156203722 156203750 -6396180 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1023 148 4 109 chrX 156203842 156203916 -6396014 + AluJb SINE Alu 85 165 -147 2116 119 27 0 chrX 156203916 156204210 -6395720 + AluSx SINE Alu 1 302 -10 1023 148 4 109 chrX 156204210 156204405 -6395525 + AluJb SINE Alu 165 312 0 2240 87 7 0 chrX 156204943 156205219 -6394711 + AluSx SINE Alu 10 287 -25 420 20 0 0 chrX 156205219 156205268 -6394662 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 222 294 51 11 chrX 156205907 156205999 -6393931 + MIR3 SINE MIR 65 162 -46 1822 155 14 17 chrX 156206185 156206497 -6393433 + AluJb SINE Alu 1 312 0 1459 241 19 32 chrX 156206532 156206963 -6392967 - MLT1D LTR MaLR 0 505 81 299 234 26 13 chrX 156207032 156207109 -6392821 - MLT1D LTR MaLR -427 78 1 2063 118 4 4 chrX 156207209 156207552 -6392378 + AluSg SINE Alu 1 343 0 1933 151 11 0 chrX 156207688 156207987 -6391943 + AluSx SINE Alu 1 302 0 252 149 0 0 chrX 156208405 156208452 -6391478 + (A)n Simple_repeat Simple_repeat 1 47 0 2206 84 21 3 chrX 156208464 156208748 -6391182 + AluSg SINE Alu 1 289 -21 798 284 25 13 chrX 156208775 156209011 -6390919 - MIR SINE MIR -4 258 20 1325 165 9 26 chrX 156209014 156209244 -6390686 - AluJo SINE Alu -2 310 85 896 141 0 7 chrX 156209505 156209640 -6390290 + AluJo SINE Alu 1 134 -178 694 254 36 10 chrX 156210098 156210291 -6389639 + MIR3 SINE MIR 3 200 -8 2365 92 0 0 chrX 156210540 156210832 -6389098 - AluSc SINE Alu -15 294 3 200 321 99 30 chrX 156211287 156211418 -6388512 - L2 LINE L2 -219 3053 2914 1901 163 10 16 chrX 156211501 156211807 -6388123 - AluJo SINE Alu -8 304 1 2448 90 0 0 chrX 156211859 156212158 -6387772 - AluSq SINE Alu -14 299 1 634 238 0 7 chrX 156212201 156212344 -6387586 + FLAM_C SINE Alu 1 142 -1 180 283 283 11 chrX 156212434 156212621 -6387309 - L2 LINE L2 -740 2574 2337 764 176 0 0 chrX 156212840 156212965 -6386965 + FRAM SINE Alu 43 167 -9 180 378 14 0 chrX 156212976 156213050 -6386880 + MIR SINE MIR 58 132 -76 901 159 51 51 chrX 156213482 156213658 -6386272 + FRAM SINE Alu 1 170 -6 331 243 37 110 chrX 156213706 156213842 -6386088 - L2 LINE L2 0 3313 3188 284 350 34 51 chrX 156213843 156214020 -6385910 - MIR3 SINE MIR -19 189 16 269 231 37 93 chrX 156214176 156214284 -6385646 - L2 LINE L2 -11 3261 3160 658 226 51 106 chrX 156214632 156214760 -6385170 - MIR SINE MIR -10 252 118 2415 79 0 0 chrX 156214760 156215052 -6384878 + AluSx SINE Alu 1 292 -20 658 226 51 106 chrX 156215052 156215068 -6384862 - MIR SINE MIR -144 118 103 225 0 0 0 chrX 156215068 156215093 -6384837 + (GAA)n Simple_repeat Simple_repeat 2 26 0 658 226 51 106 chrX 156215093 156215164 -6384766 - MIR SINE MIR -159 103 48 209 306 16 0 chrX 156215579 156215641 -6384289 - L2 LINE L2 -5 3308 3246 * 211 272 50 92 chrX 156215637 156215876 -6384054 - L2 LINE L2 -127 3145 2917 2480 77 0 10 chrX 156215912 156216223 -6383707 + AluSc SINE Alu 1 308 -1 2210 109 3 6 chrX 156216225 156216538 -6383392 + AluSx SINE Alu 1 312 0 2358 80 0 13 chrX 156216540 156216840 -6383090 + AluSg SINE Alu 1 296 -14 280 330 168 12 chrX 156217001 156217174 -6382756 + L2 LINE L2 2543 2742 -572 2575 74 0 0 chrX 156217181 156217492 -6382438 + AluY SINE Alu 1 311 0 2705 102 13 0 chrX 156217492 156217876 -6382054 + L1PA13 LINE L1 5775 6163 0 864 153 80 0 chrX 156217897 156218047 -6381883 + AluJo SINE Alu 121 282 -30 2370 91 7 0 chrX 156218047 156218345 -6381585 - AluSp SINE Alu -13 300 1 2269 121 0 6 chrX 156218357 156218670 -6381260 - AluSx SINE Alu -1 311 1 475 295 126 49 chrX 156219218 156219648 -6380282 - L2 LINE L2 0 3313 2851 2414 80 13 0 chrX 156220100 156220399 -6379531 + AluSx SINE Alu 2 304 -8 2369 92 7 0 chrX 156220470 156220776 -6379154 + AluSx SINE Alu 5 312 0 1753 92 11 61 chrX 156220838 156221099 -6378831 + AluSg SINE Alu 56 303 -7 2178 102 24 3 chrX 156221110 156221404 -6378526 + AluSp SINE Alu 1 300 -13 2251 126 0 3 chrX 156221404 156221713 -6378217 + AluSp SINE Alu 1 308 -5 2277 96 0 13 chrX 156222552 156222688 -6377242 + AluSq SINE Alu 1 137 -176 2296 50 69 0 chrX 156222688 156222965 -6376965 + AluSg SINE Alu 1 296 -14 2277 96 0 13 chrX 156222965 156223130 -6376800 + AluSq SINE Alu 137 298 -15 2462 58 0 0 chrX 156223132 156223427 -6376503 + AluY SINE Alu 1 295 -16 1208 93 0 11 chrX 156223445 156223627 -6376303 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 221 383 106 0 chrX 156223883 156224024 -6375906 + MIR3 SINE MIR 26 181 -27 22 35 0 0 chrX 156224377 156224406 -6375524 + AT_rich Low_complexity Low_complexity 1 29 0 1561 170 42 48 chrX 156224422 156224734 -6375196 - AluSx SINE Alu 0 312 3 664 183 0 63 chrX 156224752 156224878 -6375052 - FLAM_A SINE Alu -24 118 1 772 103 9 0 chrX 156224954 156225061 -6374869 - FLAM_C SINE Alu -19 124 17 2318 117 3 0 chrX 156225065 156225372 -6374558 - AluSx SINE Alu -4 308 1 2444 93 0 0 chrX 156225383 156225694 -6374236 - AluSx SINE Alu -1 311 1 218 303 55 46 chrX 156226343 156226452 -6373478 - MIR SINE MIR -77 131 22 365 282 141 25 chrX 156227470 156227633 -6372297 + L3 LINE CR1 1390 1571 -6 2062 100 64 7 chrX 156227695 156227975 -6371955 - AluSg SINE Alu -14 296 1 374 267 68 41 chrX 156228394 156228540 -6371390 - MER20B DNA MER1_type -601 182 33 224 341 24 24 chrX 156228594 156228655 -6371275 - MIR SINE MIR -101 107 44 240 35 0 0 chrX 156228655 156228684 -6371246 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 224 341 24 24 chrX 156228684 156228707 -6371223 - MIR SINE MIR -163 45 23 333 0 0 0 chrX 156229618 156229655 -6370275 + (CCG)n Simple_repeat Simple_repeat 3 39 0 215 203 0 47 chrX 156229696 156229760 -6370170 + C-rich Low_complexity Low_complexity 3 63 0 28 71 0 0 chrX 156230043 156230099 -6369831 + GC_rich Low_complexity Low_complexity 1 56 0 74 76 0 27 chrX 156230188 156230412 -6369518 + GC_rich Low_complexity Low_complexity 1 218 0 58 41 0 10 chrX 156230464 156230523 -6369407 + GC_rich Low_complexity Low_complexity 1 60 -36 231 36 0 0 chrX 156230523 156230551 -6369379 + (CGGGG)n Simple_repeat Simple_repeat 1 28 0 58 41 0 10 chrX 156230551 156230588 -6369342 + GC_rich Low_complexity Low_complexity 60 96 0 28 0 0 0 chrX 156230603 156230631 -6369299 + GC_rich Low_complexity Low_complexity 1 28 0 283 233 11 11 chrX 156230662 156230752 -6369178 + (CCG)n Simple_repeat Simple_repeat 3 92 0 22 0 0 0 chrX 156230908 156230930 -6369000 + GC_rich Low_complexity Low_complexity 1 22 0 188 267 0 33 chrX 156232732 156232852 -6367078 + (CATATA)n Simple_repeat Simple_repeat 1 116 0 2170 77 15 11 chrX 156232862 156233134 -6366796 - AluSp SINE Alu -27 286 14 357 131 0 0 chrX 156234047 156234108 -6365822 + (GGA)n Simple_repeat Simple_repeat 3 63 0 4604 180 122 36 chrX 156237551 156238284 -6361646 + L1MB8 LINE L1 3860 4529 -1649 1692 174 27 17 chrX 156238284 156238578 -6361352 - AluJb SINE Alu -15 297 1 4604 180 122 36 chrX 156238578 156238599 -6361331 + L1MB8 LINE L1 4529 4547 -1631 2044 111 6 69 chrX 156238599 156238931 -6360999 + AluSx SINE Alu 1 311 -1 4604 180 122 36 chrX 156238931 156239653 -6360277 + L1MB8 LINE L1 4547 5474 -704 3046 151 22 71 chrX 156240394 156240627 -6359303 + L1MB8 LINE L1 5478 5721 -457 2152 93 54 0 chrX 156240627 156240905 -6359025 - AluSx SINE Alu -19 293 1 3046 151 22 71 chrX 156240905 156240917 -6359013 + L1MB8 LINE L1 5721 5732 -446 2503 61 3 0 chrX 156240917 156241213 -6358717 - AluY SINE Alu -14 297 1 3046 151 22 71 chrX 156241213 156241469 -6358461 + L1MB8 LINE L1 5732 5999 -179 2475 72 0 0 chrX 156241469 156241760 -6358170 + AluSc SINE Alu 1 291 -18 3046 151 22 71 chrX 156241760 156241919 -6358011 + L1MB8 LINE L1 5999 6164 -14 2281 111 0 3 chrX 156241919 156242217 -6357713 - AluSx SINE Alu -15 297 1 2103 124 7 0 chrX 156242217 156242516 -6357414 - AluSx SINE Alu -11 301 1 3046 151 22 71 chrX 156242516 156242565 -6357365 + L1MB8 LINE L1 6106 6156 -22 221 158 26 0 chrX 156242675 156242713 -6357217 + GA-rich Low_complexity Low_complexity 3 41 0 1734 176 7 3 chrX 156242755 156243045 -6356885 - AluJb SINE Alu -4 308 18 512 266 33 70 chrX 156243109 156243350 -6356580 + L2 LINE L2 2248 2479 -835 2350 115 0 0 chrX 156243415 156243727 -6356203 - AluSx SINE Alu 0 312 1 22 0 0 0 chrX 156243743 156243765 -6356165 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chrX 156243771 156243794 -6356136 + (TTC)n Simple_repeat Simple_repeat 2 24 0 290 278 59 27 chrX 156243938 156244087 -6355843 + L2 LINE L2 2577 3311 -2 347 223 10 155 chrX 156244137 156244343 -6355587 - L2 LINE L2 -499 2815 2640 505 290 71 6 chrX 156244346 156244515 -6355415 - MLT1J2 LTR MaLR -8 442 263 450 242 134 13 chrX 156244544 156244701 -6355229 - MLT1J2 LTR MaLR -272 178 3 229 351 18 9 chrX 156244703 156244814 -6355116 - L2 LINE L2 -671 2643 2532 2738 160 69 38 chrX 156244817 156245067 -6354863 - L1MA9 LINE L1 -257 6055 5814 2334 90 0 7 chrX 156245067 156245356 -6354574 - AluSx SINE Alu -20 292 6 2738 160 69 38 chrX 156245356 156245712 -6354218 - L1MA9 LINE L1 -498 5814 5430 672 108 0 20 chrX 156245711 156245813 -6354117 - L1M2 LINE L1 -759 5532 5433 * 889 147 26 99 chrX 156245800 156246072 -6353858 + L1MA9 LINE L1 6029 6280 -32 232 268 30 104 chrX 156246143 156246204 -6353726 - L2 LINE L2 -801 2513 2449 2526 62 3 3 chrX 156246204 156246509 -6353421 + AluSp SINE Alu 1 305 -8 232 268 30 104 chrX 156246509 156246578 -6353352 - L2 LINE L2 -865 2449 2395 1727 139 23 63 chrX 156246578 156246901 -6353029 + AluJo SINE Alu 5 312 0 232 268 30 104 chrX 156246901 156246933 -6352997 - L2 LINE L2 -919 2395 2362 2417 85 0 3 chrX 156247626 156247932 -6351998 - AluY SINE Alu -6 305 1 24 0 0 0 chrX 156248004 156248028 -6351902 + AT_rich Low_complexity Low_complexity 1 24 0 433 333 0 8 chrX 156248205 156248328 -6351602 - MIR SINE MIR -116 146 25 256 352 99 28 chrX 156248332 156248474 -6351456 - L2 LINE L2 -17 3255 3104 2330 96 7 0 chrX 156248498 156248789 -6351141 + AluSq SINE Alu 1 293 -20 241 268 72 10 chrX 156248854 156248951 -6350979 - L2 LINE L2 -219 3053 2951 941 195 87 22 chrX 156249008 156249239 -6350691 - MLT1E LTR MaLR 0 593 348 2281 73 6 82 chrX 156249239 156249664 -6350266 - AluY SINE Alu 0 400 1 2201 113 3 22 chrX 156249691 156250009 -6349921 - AluSx SINE Alu 0 312 1 1903 162 3 10 chrX 156250021 156250323 -6349607 - AluJb SINE Alu -12 300 1 223 258 0 0 chrX 156250326 156250392 -6349538 + T-rich Low_complexity Low_complexity 1 66 0 923 246 64 45 chrX 156250424 156250737 -6349193 - MLT1E LTR MaLR -267 326 8 695 249 63 113 chrX 156250753 156251134 -6348796 - MLT1E-int LTR MaLR -24 1347 986 2208 127 0 0 chrX 156251155 156251454 -6348476 - AluSg SINE Alu -9 301 3 320 270 0 11 chrX 156251555 156251644 -6348286 - MIR SINE MIR -1 261 174 23 33 0 0 chrX 156252032 156252062 -6347868 + AT_rich Low_complexity Low_complexity 1 30 0 614 149 7 64 chrX 156252062 156252203 -6347727 - L1MA7 LINE L1 -2 6289 6157 833 209 31 11 chrX 156252205 156252396 -6347534 - AluJb SINE Alu 0 312 118 1591 192 8 37 chrX 156252396 156252777 -6347153 - L1MA7 LINE L1 -139 6152 5783 412 274 67 3 chrX 156252785 156252951 -6346979 - L1ME3A LINE L1 -262 5912 5737 1077 154 31 26 chrX 156252962 156253157 -6346773 + L1MB7 LINE L1 5981 6176 -8 2675 228 34 65 chrX 156253322 156253854 -6346076 + L1ME3 LINE L1 5369 5916 -246 1692 174 7 3 chrX 156253854 156254148 -6345782 + AluJb SINE Alu 1 295 -17 2675 228 34 65 chrX 156254148 156254170 -6345760 + L1ME3 LINE L1 5916 5937 -225 1711 151 7 30 chrX 156254170 156254469 -6345461 + AluJb SINE Alu 11 302 -10 2675 228 34 65 chrX 156254469 156254698 -6345232 + L1ME3 LINE L1 5937 6130 -32 2053 119 85 25 chrX 156254698 156255052 -6344878 + THE1C LTR MaLR 1 375 0 2675 228 34 65 chrX 156255052 156255082 -6344848 + L1ME3 LINE L1 6130 6159 -3 236 224 35 35 chrX 156255120 156255178 -6344752 + L1ME3A LINE L1 4 61 -6058 1689 255 125 17 chrX 156255467 156256427 -6343503 + L1ME3A LINE L1 4880 5945 -208 265 284 86 66 chrX 156256482 156256542 -6343388 + L1ME3A LINE L1 5945 6002 -151 2541 147 8 5 chrX 156256542 156256930 -6343000 + MLT1B LTR MaLR 1 389 -1 265 284 86 66 chrX 156256930 156257066 -6342864 + L1ME3A LINE L1 6002 6145 -8 2155 154 51 40 chrX 156257178 156257323 -6342607 - L1MB7 LINE L1 -10 6174 6032 2322 109 0 10 chrX 156257323 156257634 -6342296 + AluSx SINE Alu 1 308 -4 2155 154 51 40 chrX 156257634 156257937 -6341993 - L1MB7 LINE L1 -152 6032 5721 1833 145 74 28 chrX 156257938 156258290 -6341640 - THE1C LTR MaLR -7 368 1 10791 125 37 2 chrX 156258290 156259817 -6340113 - THE1C-int LTR MaLR 0 1580 1 1711 133 151 21 chrX 156259817 156260149 -6339781 - THE1C LTR MaLR 0 375 1 2086 135 46 26 chrX 156260150 156260466 -6339464 - L1MB7 LINE L1 -450 5724 5399 1280 128 70 152 chrX 156260466 156260683 -6339247 - AluJb SINE Alu -10 302 120 261 0 0 0 chrX 156260683 156260712 -6339218 + (TG)n Simple_repeat Simple_repeat 2 30 0 1280 128 70 152 chrX 156260712 156260823 -6339107 - AluJb SINE Alu -192 120 1 2086 135 46 26 chrX 156260823 156260855 -6339075 - L1MB7 LINE L1 -775 5399 5369 317 261 0 0 chrX 156260865 156260930 -6339000 - MIR SINE MIR -117 145 81 495 275 25 19 chrX 156261272 156261432 -6338498 - MIR3 SINE MIR -7 201 41 233 326 42 32 chrX 156262113 156262208 -6337722 + MIR3 SINE MIR 2 97 -111 934 79 24 18 chrX 156262209 156262373 -6337557 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 700 124 0 0 chrX 156262375 156262464 -6337466 - AluSg/x SINE Alu -33 279 191 275 269 0 87 chrX 156262471 156262575 -6337355 + MIR SINE MIR 107 201 -61 257 256 111 43 chrX 156262675 156262717 -6337213 + L1ME4a LINE L1 5255 5293 -2515 2418 81 3 10 chrX 156262717 156263027 -6336903 + AluSp SINE Alu 4 311 -2 257 256 111 43 chrX 156263027 156263218 -6336712 + L1ME4a LINE L1 5293 5504 -2304 2317 113 7 0 chrX 156263297 156263607 -6336323 + AluSx SINE Alu 1 312 0 23 33 0 0 chrX 156263685 156263715 -6336215 + AT_rich Low_complexity Low_complexity 1 30 0 1929 143 0 3 chrX 156263775 156264062 -6335868 + AluSx SINE Alu 1 286 -26 1895 170 3 3 chrX 156264432 156264744 -6335186 + AluJb SINE Alu 1 312 0 658 229 59 41 chrX 156264926 156265096 -6334834 + MLT1H LTR MaLR 116 288 -261 2322 205 10 38 chrX 156265098 156265667 -6334263 + MER77 LTR ERV1 1 605 0 372 262 116 46 chrX 156265680 156265932 -6333998 + MLT1H LTR MaLR 333 549 0 400 286 70 28 chrX 156265933 156266146 -6333784 + L1ME4a LINE L1 5742 5963 -158 2056 78 0 11 chrX 156266337 156266605 -6333325 - AluSc SINE Alu -12 297 33 21 0 0 0 chrX 156266723 156266744 -6333186 + AT_rich Low_complexity Low_complexity 1 21 0 2291 106 0 0 chrX 156266753 156267045 -6332885 + AluSq SINE Alu 1 292 -21 692 178 0 0 chrX 156267046 156267153 -6332777 + AluJo/FRAM SINE Alu 133 239 -73 1578 191 146 20 chrX 156267153 156267503 -6332427 + MLT2B1 LTR ERVL 66 459 -61 192 77 0 0 chrX 156267505 156267531 -6332399 + (CATATA)n Simple_repeat Simple_repeat 5 30 0 368 189 0 11 chrX 156267566 156267610 -6332320 + (TA)n Simple_repeat Simple_repeat 1 44 -45 2183 174 3 9 chrX 156267610 156267960 -6331970 + MER7A DNA MER2_type 1 346 0 368 189 0 11 chrX 156267960 156268005 -6331925 + (TA)n Simple_repeat Simple_repeat 44 89 0 227 184 82 0 chrX 156268006 156268055 -6331875 + MLT2B1 LTR ERVL 466 518 -2 485 244 46 65 chrX 156268180 156268397 -6331533 - MIR SINE MIR -10 252 40 365 259 5 58 chrX 156269074 156269263 -6330667 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 493 229 11 58 chrX 156269281 156269469 -6330461 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 446 303 11 0 chrX 156269520 156269769 -6330161 + (TCTCTG)n Simple_repeat Simple_repeat 1 251 0 256 315 6 11 chrX 156269820 156270084 -6329846 + (TATATG)n Simple_repeat Simple_repeat 1 262 0 475 291 7 19 chrX 156270121 156270536 -6329394 + (TCTCTG)n Simple_repeat Simple_repeat 1 410 0 416 265 11 7 chrX 156270601 156270881 -6329049 + (TCTCTG)n Simple_repeat Simple_repeat 1 281 0 315 324 17 17 chrX 156271135 156271308 -6328622 + (TCTCTG)n Simple_repeat Simple_repeat 4 176 0 242 250 10 0 chrX 156271334 156271438 -6328492 + (TCTCTG)n Simple_repeat Simple_repeat 4 108 0 614 159 0 0 chrX 156271534 156271622 -6328308 - 5S rRNA rRNA -31 90 3 507 283 6 17 chrX 156271665 156271842 -6328088 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 373 287 11 33 chrX 156271879 156272060 -6327870 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 320 312 6 0 chrX 156272007 156272177 -6327753 + (TATATG)n Simple_repeat Simple_repeat 4 174 0 * 441 313 12 6 chrX 156272132 156272298 -6327632 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 217 257 22 11 chrX 156272310 156272496 -6327434 + (TCTCTG)n Simple_repeat Simple_repeat 1 188 0 483 293 17 0 chrX 156272617 156272791 -6327139 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 344 316 17 11 chrX 156272814 156272988 -6326942 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 2159 99 0 0 chrX 156273088 156273360 -6326570 - AluSc SINE Alu -37 272 1 299 245 82 0 chrX 156273361 156273459 -6326471 + L1ME4a LINE L1 5998 6103 -18 2217 113 0 46 chrX 156274043 156274370 -6325560 + AluSx SINE Alu 1 312 0 997 217 73 52 chrX 156274512 156274798 -6325132 + MLT1C LTR MaLR 176 467 0 1072 167 136 48 chrX 156274864 156275158 -6324772 - MER33 DNA MER1_type 0 324 5 654 163 32 0 chrX 156275915 156276038 -6323892 - L1MA7 LINE L1 -101 6190 6064 579 110 0 11 chrX 156276038 156276124 -6323806 + L1MA7 LINE L1 6198 6287 -4 227 292 56 0 chrX 156276549 156276621 -6323309 - L2 LINE L2 -9 3304 3229 714 284 68 75 chrX 156276629 156277098 -6322832 - L2 LINE L2 0 3313 2848 223 304 201 54 chrX 156277109 156277313 -6322617 - L2 LINE L2 -344 2970 2737 2758 127 43 45 chrX 156277726 156278020 -6321910 - MLT1C LTR MaLR 0 467 173 1764 178 20 0 chrX 156278020 156278324 -6321606 - AluJb SINE Alu -2 310 1 2758 127 43 45 chrX 156278324 156278493 -6321437 - MLT1C LTR MaLR -294 173 5 598 215 127 6 chrX 156278759 156278917 -6321013 - MLT1I LTR MaLR 0 409 233 509 218 8 0 chrX 156279179 156279303 -6320627 + GA-rich Low_complexity Low_complexity 3 127 0 1114 128 17 17 chrX 156279410 156279589 -6320341 + MSTD LTR MaLR 218 396 0 1332 272 121 16 chrX 156279669 156280406 -6319524 + L2 LINE L2 2522 3313 0 240 300 50 30 chrX 156280912 156281012 -6318918 - MIR SINE MIR -94 168 67 22 0 0 0 chrX 156281768 156281790 -6318140 + AT_rich Low_complexity Low_complexity 1 22 0 215 152 0 0 chrX 156282097 156282130 -6317800 + L2 LINE L2 3015 3047 -225 992 261 126 45 chrX 156282177 156282622 -6317308 - L2 LINE L2 0 3313 2833 1341 216 68 61 chrX 156282692 156283086 -6316844 - LTR16A LTR ERVL 0 450 54 556 155 0 0 chrX 156283097 156283181 -6316749 + MLT1B LTR MaLR 307 390 0 427 333 44 6 chrX 156283282 156283441 -6316489 + MIR SINE MIR 7 171 -91 294 95 0 0 chrX 156283866 156283908 -6316022 + (GGA)n Simple_repeat Simple_repeat 2 43 0 724 240 78 17 chrX 156284636 156284722 -6315208 + MIR SINE MIR 66 145 -117 1829 145 77 31 chrX 156284722 156285046 -6314884 - MER44D DNA MER2_type 0 609 1 724 240 78 17 chrX 156285046 156285138 -6314792 + MIR SINE MIR 145 255 -7 9745 120 19 23 chrX 156285300 156286795 -6313135 - L1P LINE L1 -4657 1489 1 2024 231 39 6 chrX 156286804 156287340 -6312590 - L1M4 LINE L1 -3106 3040 2487 592 184 20 132 chrX 156287350 156287425 -6312505 + L1M4 LINE L1 4196 4278 -1868 2467 55 7 3 chrX 156287425 156287732 -6312198 + AluY SINE Alu 1 308 -3 592 184 20 132 chrX 156287732 156287744 -6312186 + L1M4 LINE L1 4278 4290 -1856 2095 29 0 8 chrX 156287744 156287987 -6311943 + AluY SINE Alu 58 298 -13 592 184 20 132 chrX 156287987 156288148 -6311782 + L1M4 LINE L1 4290 4417 -1729 588 303 139 89 chrX 156288553 156289094 -6310836 - MLT1K LTR MaLR 0 588 21 2503 116 132 5 chrX 156289962 156290341 -6309589 + MSTA LTR MaLR 2 428 0 1842 188 0 3 chrX 156290601 156290904 -6309026 - AluJb SINE Alu -10 302 1 636 242 60 0 chrX 156291290 156291439 -6308491 - MER104 DNA Tc2 -22 158 1 776 271 68 4 chrX 156291447 156291683 -6308247 + MIR SINE MIR 12 262 0 187 314 63 73 chrX 156291988 156292179 -6307751 + L2 LINE L2 218 406 -2908 353 296 86 14 chrX 156292493 156292713 -6307217 - L1MC4a LINE L1 -1884 5924 5689 1930 234 90 107 chrX 156292783 156292922 -6307008 - HAL1b LINE L1 0 1348 1208 1627 154 103 63 chrX 156292922 156293273 -6306657 + MLT1A1 LTR MaLR 1 365 0 1930 234 90 107 chrX 156293273 156293524 -6306406 - HAL1b LINE L1 -140 1208 954 2042 92 4 0 chrX 156293524 156293812 -6306118 + AluSp SINE Alu 22 310 0 1930 234 90 107 chrX 156293812 156294620 -6305310 - HAL1b LINE L1 -394 954 169 268 167 0 0 chrX 156294648 156294696 -6305234 - L2 LINE L2 0 3313 3266 1180 148 55 10 chrX 156294696 156294898 -6305032 - MSTB LTR MaLR 0 432 222 383 130 0 14 chrX 156294934 156295003 -6304927 + (GAA)n Simple_repeat Simple_repeat 1 68 0 1282 164 13 18 chrX 156295003 156295229 -6304701 - MSTB LTR MaLR -198 228 4 457 203 157 61 chrX 156295244 156295441 -6304489 - L2 LINE L2 -85 3228 3013 * 1492 199 91 31 chrX 156295440 156295826 -6304104 + L2 LINE L2 2246 2654 -660 452 236 246 11 chrX 156296053 156296244 -6303686 + MIR SINE MIR 15 250 -12 751 326 66 54 chrX 156296257 156296806 -6303124 - L2 LINE L2 0 3272 2704 1775 167 0 14 chrX 156297790 156298083 -6301847 - AluJo SINE Alu -23 289 1 210 384 8 16 chrX 156298219 156298344 -6301586 + MIR SINE MIR 20 143 -119 2400 224 86 2 chrX 156298384 156298518 -6301412 - L1M4 LINE L1 -1844 4302 4181 1022 37 15 0 chrX 156298518 156298652 -6301278 + (TTTC)n Simple_repeat Simple_repeat 2 137 0 2400 224 86 2 chrX 156298652 156299097 -6300833 - L1M4 LINE L1 -1965 4181 3674 273 75 0 0 chrX 156299176 156299216 -6300714 + (TG)n Simple_repeat Simple_repeat 2 41 0 457 195 0 0 chrX 156299293 156299370 -6300560 - MLT2E LTR ERVL -13 615 539 824 160 0 62 chrX 156299461 156299605 -6300325 + FLAM_C SINE Alu 2 136 -7 1539 258 91 30 chrX 156299644 156300574 -6299356 - L1ME3A LINE L1 -219 5951 4963 2344 109 0 0 chrX 156300670 156300983 -6298947 - AluSq SINE Alu 0 313 1 1665 183 0 3 chrX 156300984 156301273 -6298657 - AluJo SINE Alu -16 296 9 2693 246 76 65 chrX 156301298 156301710 -6298220 - HAL1 LINE L1 -3 2504 2098 4047 146 7 3 chrX 156301710 156302313 -6297617 + MER6A DNA MER2_type 1 605 0 2693 246 76 65 chrX 156302313 156302658 -6297272 - HAL1 LINE L1 -409 2098 1758 3298 43 0 0 chrX 156302658 156303029 -6296901 - L1PA6 LINE L1 -1 6153 5783 2693 246 76 65 chrX 156303029 156303204 -6296726 - HAL1 LINE L1 -749 1758 1586 2154 125 0 0 chrX 156303204 156303508 -6296422 - AluSg SINE Alu -6 304 1 2693 246 76 65 chrX 156303508 156304098 -6295832 - HAL1 LINE L1 -921 1586 970 757 299 122 35 chrX 156304279 156304707 -6295223 - HAL1 LINE L1 -2039 468 4 2181 107 7 0 chrX 156305013 156305304 -6294626 + AluSg SINE Alu 1 293 -17 1060 161 0 0 chrX 156305304 156305459 -6294471 + AluJb SINE Alu 134 288 -24 214 218 18 0 chrX 156305460 156305515 -6294415 + (TA)n Simple_repeat Simple_repeat 2 57 0 1521 261 99 26 chrX 156305536 156306234 -6293696 - L1ME3A LINE L1 -223 5947 5180 2131 135 6 0 chrX 156306234 156306545 -6293385 - AluSq SINE Alu 0 313 1 1521 261 99 26 chrX 156306545 156306603 -6293327 - L1ME3A LINE L1 -990 5180 5128 797 236 103 30 chrX 156306665 156306936 -6292994 + LTR33A LTR ERVL 1 291 -232 2221 112 0 7 chrX 156307030 156307335 -6292595 - AluSg SINE Alu -7 303 1 400 281 60 60 chrX 156307341 156307364 -6292566 - L1ME3A LINE L1 -1095 5051 5029 693 186 23 23 chrX 156307364 156307493 -6292437 - FLAM_A SINE Alu -4 129 1 400 281 60 60 chrX 156307493 156307750 -6292180 - L1ME3A LINE L1 -1116 5030 4771 5287 154 18 28 chrX 156307758 156309159 -6290771 - L1MA6 LINE L1 0 6300 4754 2226 108 3 0 chrX 156309159 156309456 -6290474 - AluSp SINE Alu -15 298 1 5287 154 18 28 chrX 156309456 156309800 -6290130 - L1MA6 LINE L1 -1546 4754 4408 1602 174 64 3 chrX 156309850 156310132 -6289798 - AluJb SINE Alu -13 299 1 2416 267 46 44 chrX 156310133 156310883 -6289047 - L1ME3A LINE L1 -1440 4706 3949 2071 109 7 0 chrX 156310883 156311193 -6288737 - AluSq SINE Alu 0 312 1 2416 267 46 44 chrX 156311193 156311649 -6288281 - L1ME3A LINE L1 -2197 3949 3496 8068 25 8 0 chrX 156311668 156312607 -6287323 + L1PA4 LINE L1 5206 6151 -4 2093 113 0 7 chrX 156312686 156313000 -6286930 - AluSq SINE Alu 0 312 1 301 336 16 8 chrX 156313464 156313592 -6286338 - ERVL LTR ERVL -4774 990 862 2610 180 25 6 chrX 156313705 156314195 -6285735 + L1MB3 LINE L1 5682 6180 -3 1821 146 0 33 chrX 156314206 156314507 -6285423 + AluSx SINE Alu 1 291 -21 21 0 0 0 chrX 156314902 156314923 -6285007 + AT_rich Low_complexity Low_complexity 1 21 0 200 269 83 74 chrX 156315419 156315527 -6284403 + MIR SINE MIR 83 191 -71 593 290 19 0 chrX 156315560 156315722 -6284208 - MIR SINE MIR -13 249 85 385 309 70 51 chrX 156315909 156316165 -6283765 + L2 LINE L2 450 710 -2604 1605 291 101 4 chrX 156316174 156316631 -6283299 - MLT2E LTR ERVL 0 628 128 198 304 0 0 chrX 156316784 156316830 -6283100 + L2 LINE L2 1876 1921 -1393 * 2123 326 63 37 chrX 156316822 156316926 -6283004 - L2 LINE L2 0 3313 3213 1846 171 7 0 chrX 156316926 156317225 -6282705 + AluJo SINE Alu 1 301 -11 2123 326 63 37 chrX 156317225 156317445 -6282485 - L2 LINE L2 -100 3213 3000 2272 102 0 0 chrX 156317445 156317740 -6282190 + AluSq SINE Alu 1 295 -18 2123 326 63 37 chrX 156317740 156318916 -6281014 - L2 LINE L2 -313 3000 1771 2723 244 95 58 chrX 156319158 156320262 -6279668 - L2 LINE L2 -5 3308 2128 2551 186 34 28 chrX 156320262 156320800 -6279130 + L1MB4 LINE L1 5640 6180 0 2723 244 95 58 chrX 156320800 156321015 -6278915 - L2 LINE L2 -1185 2128 1922 205 194 75 119 chrX 156321201 156321268 -6278662 + MIR SINE MIR 58 121 -87 489 52 0 0 chrX 156321314 156321372 -6278558 + HERVL LTR ERVL 3932 3989 -1665 1150 95 69 16 chrX 156321372 156321561 -6278369 - THE1C LTR MaLR -176 199 1 475 298 70 18 chrX 156321589 156321760 -6278170 + MIR SINE MIR 33 212 -50 452 316 103 6 chrX 156321773 156321947 -6277983 - MIR SINE MIR -43 219 29 319 253 132 63 chrX 156322910 156323100 -6276830 + MER20 DNA MER1_type 16 218 -1 364 264 171 45 chrX 156323423 156323821 -6276109 - L2 LINE L2 -882 2432 1985 211 226 81 16 chrX 156323883 156323945 -6275985 + L2 LINE L2 3207 3272 0 226 264 200 0 chrX 156324956 156325081 -6274849 - MIR3 SINE MIR -19 189 40 1274 248 86 21 chrX 156325799 156326439 -6273491 + L2 LINE L2 2581 3268 -45 375 60 0 0 chrX 156327320 156327370 -6272560 + (CA)n Simple_repeat Simple_repeat 2 51 0 326 247 0 6 chrX 156327567 156327725 -6272205 + (CA)n Simple_repeat Simple_repeat 1 157 0 725 158 0 18 chrX 156327734 156327848 -6272082 + FLAM_C SINE Alu 16 127 -16 26 64 0 0 chrX 156328525 156328572 -6271358 + AT_rich Low_complexity Low_complexity 1 47 0 284 290 32 11 chrX 156328683 156328776 -6271154 + MIR SINE MIR 52 146 -116 21 0 0 0 chrX 156328797 156328818 -6271112 + AT_rich Low_complexity Low_complexity 1 21 0 1173 259 30 63 chrX 156328862 156329107 -6270823 + L1MEc LINE L1 1352 1575 -4821 2395 93 7 0 chrX 156329107 156329417 -6270513 + AluSx SINE Alu 1 312 0 1173 259 30 63 chrX 156329417 156329662 -6270268 + L1MEc LINE L1 1575 1826 -4570 200 233 50 33 chrX 156329662 156329722 -6270208 + L2 LINE L2 3209 3269 -44 298 295 0 0 chrX 156329885 156329963 -6269967 - L1ME4a LINE L1 -70 6331 6254 381 22 0 0 chrX 156329964 156330010 -6269920 + (TC)n Simple_repeat Simple_repeat 2 47 0 261 0 0 0 chrX 156330009 156330038 -6269892 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 607 279 43 37 chrX 156330108 156330358 -6269572 - L1ME4a LINE L1 -414 5987 5733 1064 71 0 0 chrX 156330358 156330506 -6269424 + L1PA8 LINE L1 6030 6177 0 607 279 43 37 chrX 156330506 156330595 -6269335 - L1ME4a LINE L1 -668 5733 5646 2472 71 3 0 chrX 156330810 156331119 -6268811 + AluY SINE Alu 2 311 0 779 219 30 0 chrX 156331479 156331643 -6268287 - L2 LINE L2 0 3313 3145 1558 238 85 29 chrX 156331703 156331918 -6268012 - L2 LINE L2 -557 2757 2555 2076 162 3 34 chrX 156331918 156332276 -6267654 - MER7A DNA MER2_type 0 346 2 1558 238 85 29 chrX 156332276 156332509 -6267421 - L2 LINE L2 -759 2555 2284 248 262 12 0 chrX 156332517 156332601 -6267329 - L1ME4a LINE L1 -2333 4093 4009 1458 127 0 0 chrX 156332729 156332941 -6266989 - L1MA5 LINE L1 -2 6298 6087 2378 57 11 3 chrX 156332941 156333223 -6266707 + AluSp SINE Alu 1 284 -29 1142 170 12 24 chrX 156333237 156333484 -6266446 + SVA Other Other 433 676 -710 234 139 0 0 chrX 156333590 156333626 -6266304 - L1MA5 LINE L1 -203 6097 6062 1712 175 0 38 chrX 156333661 156334022 -6265908 + AluJb SINE Alu 6 354 0 314 219 14 0 chrX 156334250 156334323 -6265607 - L1ME4a LINE L1 -4358 2068 1995 * 359 261 11 0 chrX 156334299 156334387 -6265543 - L1MC4 LINE L1 -1339 6983 6895 1047 167 0 0 chrX 156334390 156334677 -6265253 + (TA)n Simple_repeat Simple_repeat 1 288 0 2245 99 0 0 chrX 156334677 156334970 -6264960 - AluSg SINE Alu -17 293 1 203 262 0 0 chrX 156335112 156335173 -6264757 + T-rich Low_complexity Low_complexity 1 61 0 655 302 101 12 chrX 156336001 156336408 -6263522 + HAL1 LINE L1 1228 1670 -837 880 300 52 39 chrX 156336442 156336805 -6263125 + LTR33 LTR ERVL 23 390 -131 1300 207 98 34 chrX 156387870 156388228 -6211702 + L2 LINE L2 2274 2654 -660 457 236 246 11 chrX 156388455 156388646 -6211284 + MIR SINE MIR 15 250 -12 760 323 66 54 chrX 156388659 156389208 -6210722 - L2 LINE L2 0 3272 2704 710 168 0 0 chrX 156390192 156390305 -6209625 - FRAM SINE Alu -23 153 41 273 75 0 0 chrX 156390455 156390495 -6209435 + (TG)n Simple_repeat Simple_repeat 2 41 0 421 195 0 0 chrX 156390572 156390649 -6209281 - MLT2E LTR ERVL -13 615 539 772 174 0 0 chrX 156390739 156390860 -6209070 + FLAM_C SINE Alu 1 121 -22 27 0 0 0 chrX 156390860 156390887 -6209043 + AT_rich Low_complexity Low_complexity 1 27 0 1358 254 90 29 chrX 156390923 156391845 -6208085 - L1ME3A LINE L1 -219 5951 4972 2347 109 0 0 chrX 156391949 156392262 -6207668 - AluSq SINE Alu 0 313 1 1684 183 0 3 chrX 156392263 156392552 -6207378 - AluJo SINE Alu -16 296 9 2199 254 77 71 chrX 156392577 156392989 -6206941 - HAL1 LINE L1 -3 2504 2096 3724 154 5 2 chrX 156392989 156393592 -6206338 + MER6A DNA MER2_type 1 605 0 2199 254 77 71 chrX 156393592 156393937 -6205993 - HAL1 LINE L1 -411 2096 1755 3098 43 0 0 chrX 156393937 156394308 -6205622 - L1PA6 LINE L1 -1 6153 5783 2199 254 77 71 chrX 156394308 156394483 -6205447 - HAL1 LINE L1 -752 1755 1583 2196 118 0 0 chrX 156394483 156394787 -6205143 - AluSg SINE Alu -6 304 1 2199 254 77 71 chrX 156394787 156395377 -6204553 - HAL1 LINE L1 -924 1583 970 609 299 122 35 chrX 156395558 156395986 -6203944 - HAL1 LINE L1 -2039 468 4 2171 107 7 0 chrX 156396292 156396582 -6203348 + AluSg SINE Alu 1 292 -18 1053 168 0 0 chrX 156396582 156396737 -6203193 + AluJb SINE Alu 134 288 -24 214 218 18 0 chrX 156396738 156396793 -6203137 + (TA)n Simple_repeat Simple_repeat 2 57 0 1288 245 92 25 chrX 156396814 156397512 -6202418 - L1ME3A LINE L1 -223 5947 5193 2144 135 6 0 chrX 156397512 156397823 -6202107 - AluSq SINE Alu 0 313 1 716 242 68 28 chrX 156397943 156398191 -6201739 + LTR33A LTR ERVL 1 258 -265 2237 108 0 7 chrX 156398308 156398613 -6201317 - AluSg SINE Alu -7 303 1 411 283 59 59 chrX 156398614 156398642 -6201288 - L1ME3A LINE L1 -1090 5056 5029 625 194 23 23 chrX 156398642 156398771 -6201159 - FLAM_A SINE Alu -4 129 1 411 283 59 59 chrX 156398771 156399028 -6200902 - L1ME3A LINE L1 -1116 5030 4771 4703 154 17 30 chrX 156399036 156400438 -6199492 - L1MA6 LINE L1 0 6300 4756 2190 107 3 3 chrX 156400438 156400736 -6199194 - AluSp SINE Alu -15 298 1 4703 154 17 30 chrX 156400736 156401081 -6198849 - L1MA6 LINE L1 -1544 4756 4408 1635 171 68 4 chrX 156401131 156401412 -6198518 - AluJb SINE Alu -13 299 1 2013 268 44 40 chrX 156401455 156402163 -6197767 - L1ME3A LINE L1 -1481 4665 3949 2065 109 7 0 chrX 156402163 156402473 -6197457 - AluSq SINE Alu 0 312 1 2013 268 44 40 chrX 156402473 156402928 -6197002 - L1ME3A LINE L1 -2197 3949 3497 6206 29 16 0 chrX 156402944 156403781 -6196149 + L1PA4 LINE L1 5203 6051 -104 574 79 0 0 chrX 156403907 156403983 -6195947 + L1PA5 LINE L1 6074 6149 -5 2100 113 0 7 chrX 156404065 156404379 -6195551 - AluSq SINE Alu 0 312 1 2628 174 25 6 chrX 156405084 156405574 -6194356 + L1MB3 LINE L1 5682 6180 -3 2139 101 0 24 chrX 156405585 156405882 -6194048 + AluSx SINE Alu 1 290 -22 871 300 52 39 chrX 156407133 156407496 -6192434 - LTR33 LTR ERVL -131 390 23 640 305 101 12 chrX 156407530 156407937 -6191993 - HAL1 LINE L1 -837 1670 1228 203 262 0 0 chrX 156408764 156408825 -6191105 + A-rich Low_complexity Low_complexity 1 61 0 2215 95 0 0 chrX 156408967 156409251 -6190679 + AluSg SINE Alu 1 284 -26 317 190 37 12 chrX 156409362 156409445 -6190485 + L1MC4 LINE L1 1995 6983 -1339 291 157 0 0 chrX 156409448 156409499 -6190431 + (TA)n Simple_repeat Simple_repeat 2 52 0 369 228 13 0 chrX 156409502 156409603 -6190327 + L1MC4 LINE L1 1995 6983 -1339 316 296 0 31 chrX 156409534 156409632 -6190298 - L1MC4 LINE L1 -1339 6703 6609 * 204 179 0 0 chrX 156409835 156409874 -6190056 + T-rich Low_complexity Low_complexity 76 114 0 1762 169 0 38 chrX 156409877 156410197 -6189733 - AluJb SINE Alu -2 310 3 234 139 0 0 chrX 156410229 156410265 -6189665 + L1MA5 LINE L1 6062 6097 -203 1142 170 12 24 chrX 156410371 156410618 -6189312 - SVA Other Other -710 676 433 2378 57 11 3 chrX 156410632 156410914 -6189016 - AluSp SINE Alu -29 284 1 1489 123 0 0 chrX 156410914 156411126 -6188804 + L1MA5 LINE L1 6087 6298 -2 248 262 12 0 chrX 156411254 156411338 -6188592 + L1M4 LINE L1 3729 3813 -2333 1558 238 85 29 chrX 156411346 156411579 -6188351 + L2 LINE L2 2284 2503 -811 2076 162 3 34 chrX 156411579 156411937 -6187993 + MER7A DNA MER2_type 2 346 0 1558 238 85 29 chrX 156411937 156412152 -6187778 + L2 LINE L2 2503 2757 -557 779 219 30 0 chrX 156412212 156412376 -6187554 + L2 LINE L2 3145 3313 0 2472 71 3 0 chrX 156412736 156413045 -6186885 - AluY SINE Alu 0 311 2 3629 81 15 8 chrX 156413374 156413855 -6186075 + L1PA8 LINE L1 5686 6169 -3 1052 137 49 59 chrX 156413855 156414059 -6185871 - MER44D DNA MER2_type -137 472 1 2334 202 36 27 chrX 156414067 156414334 -6185596 - L1M4c LINE L1 -4813 1833 1570 1315 173 45 130 chrX 156414334 156414733 -6185197 + MLT1A1 LTR MaLR 1 365 0 2334 202 36 27 chrX 156414733 156415175 -6184755 - L1M4c LINE L1 -5076 1570 1111 588 165 15 68 chrX 156415279 156415290 -6184640 - FRAM SINE Alu -136 40 30 2412 75 3 3 chrX 156415290 156415597 -6184333 - AluSc SINE Alu -2 307 1 588 165 15 68 chrX 156415597 156415619 -6184311 - FRAM SINE Alu -146 30 102 189 107 0 0 chrX 156415619 156415647 -6184283 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 588 165 15 68 chrX 156415647 156415745 -6184185 - FRAM SINE Alu -73 103 1 1915 124 11 11 chrX 156415748 156416076 -6183854 - AluSx SINE Alu 0 328 1 1114 190 37 4 chrX 156416076 156416318 -6183612 - L1M4 LINE L1 -3058 3088 2839 1948 259 18 39 chrX 156416383 156417048 -6182882 - L1M4 LINE L1 -3317 2829 2179 943 140 40 0 chrX 156417059 156417209 -6182721 - L1MA3 LINE L1 0 6305 6150 2328 184 2 0 chrX 156417209 156417638 -6182292 + L1 LINE L1 4864 5293 -853 5584 124 15 25 chrX 156417642 156418559 -6181371 - L1MA3 LINE L1 -144 6161 5254 260 296 133 40 chrX 156418666 156419064 -6180866 - L1M4 LINE L1 -1088 5058 4624 2240 194 18 11 chrX 156419069 156419527 -6180403 - L1M4 LINE L1 -2139 4007 3547 * 7005 172 35 43 chrX 156419526 156421208 -6178722 + L1PA16 LINE L1 3663 5332 -834 2357 97 0 0 chrX 156421208 156421506 -6178424 + AluSx SINE Alu 1 298 -14 7005 172 35 43 chrX 156421506 156422332 -6177598 + L1PA16 LINE L1 5332 6163 -3 1751 207 39 5 chrX 156422333 156422743 -6177187 - L1M4 LINE L1 -2592 3554 3131 * 43365 41 23 1 chrX 156422712 156428738 -6171192 - L1PA5 LINE L1 0 6154 1 184 333 49 25 chrX 156428741 156428822 -6171108 + L2 LINE L2 2942 3024 -248 467 211 0 0 chrX 156428898 156428973 -6170957 + Tigger5 DNA MER2_type 4 78 -2245 384 211 40 0 chrX 156428973 156429049 -6170881 - Tigger5 DNA MER2_type -3 2320 2242 344 167 0 0 chrX 156429045 156429099 -6170831 + Tigger5 DNA MER2_type 2264 2317 -6 * 648 267 43 11 chrX 156429111 156429548 -6170382 + HAL1 LINE L1 84 657 -1850 2451 146 86 4 chrX 156429736 156430189 -6169741 - L1MB2 LINE L1 -2 6169 5680 208 275 55 115 chrX 156430335 156430517 -6169413 + MIR SINE MIR 35 205 -57 184 167 42 0 chrX 156431400 156431448 -6168482 + MIR SINE MIR 86 135 -73 189 0 0 0 chrX 156431981 156432002 -6167928 + (T)n Simple_repeat Simple_repeat 1 21 0 342 0 0 0 chrX 156432338 156432376 -6167554 + (TG)n Simple_repeat Simple_repeat 2 39 0 205 246 46 0 chrX 156433037 156433102 -6166828 + CT-rich Low_complexity Low_complexity 3 70 0 348 246 97 30 chrX 156433534 156433668 -6166262 - L1ME4a LINE L1 0 6121 5979 2066 106 23 27 chrX 156433719 156434020 -6165910 - AluSx SINE Alu -3 309 10 192 327 238 0 chrX 156434062 156434163 -6165767 + L2 LINE L2 3147 3271 -1 716 197 7 14 chrX 156434427 156434574 -6165356 + L2 LINE L2 3168 3313 0 197 318 65 47 chrX 156434737 156434844 -6165086 - MIR SINE MIR -83 125 17 371 80 0 0 chrX 156435555 156435605 -6164325 - L1PA12 LINE L1 0 6168 6119 412 323 6 66 chrX 156435963 156436296 -6163634 - L2 LINE L2 -2 3270 2878 228 300 124 38 chrX 156436336 156436546 -6163384 - L2 LINE L2 -727 2587 2360 262 286 39 0 chrX 156436634 156436711 -6163219 - L2 LINE L2 -558 2756 2677 821 304 173 26 chrX 156436738 156437317 -6162613 - L2 LINE L2 -826 2488 1825 309 324 23 12 chrX 156437317 156437490 -6162440 + L1M4 LINE L1 4341 4515 -1631 1959 278 62 24 chrX 156437502 156438006 -6161924 + L1ME2 LINE L1 4373 4856 -1306 2186 117 3 0 chrX 156438006 156438305 -6161625 + AluSp SINE Alu 1 300 -13 1959 278 62 24 chrX 156438305 156439339 -6160591 + L1ME2 LINE L1 4856 5957 -205 400 122 24 0 chrX 156439339 156439421 -6160509 + (TA)n Simple_repeat Simple_repeat 1 84 0 2417 89 3 0 chrX 156439584 156439888 -6160042 + AluSp SINE Alu 1 305 -8 241 276 14 34 chrX 156439891 156440019 -6159911 + L1MC5 LINE L1 7845 8037 -5 183 246 46 15 chrX 156440105 156440170 -6159760 - L2 LINE L2 -553 2761 2695 304 395 0 0 chrX 156441007 156441126 -6158804 - MIR SINE MIR -55 153 35 21 36 0 0 chrX 156441252 156441280 -6158650 + AT_rich Low_complexity Low_complexity 1 28 0 319 341 60 28 chrX 156441767 156441949 -6157981 + L2 LINE L2 3083 3270 -2 227 365 32 8 chrX 156442911 156443037 -6156893 - L2 LINE L2 -234 3038 2910 506 219 62 16 chrX 156443113 156443241 -6156689 + L2 LINE L2 3180 3313 0 214 184 20 0 chrX 156444957 156445006 -6154924 + (TGG)n Simple_repeat Simple_repeat 3 52 0 723 283 6 6 chrX 156445174 156445340 -6154590 + MIR3 SINE MIR 16 181 -27 1052 115 85 0 chrX 156445757 156445922 -6154008 - AluSg/x SINE Alu 0 312 134 311 232 24 0 chrX 156446194 156446290 -6153640 - MIR3 SINE MIR -6 202 103 261 335 170 35 chrX 156446651 156446881 -6153049 - L2 LINE L2 0 3272 3012 699 241 79 49 chrX 156446921 156447124 -6152806 - MIR SINE MIR -52 210 2 202 288 38 50 chrX 156447128 156447208 -6152722 - L2 LINE L2 -310 2962 2884 650 325 154 17 chrX 156447324 156447835 -6152095 - L2 LINE L2 -610 2704 2077 215 188 31 78 chrX 156449641 156449705 -6150225 + L2 LINE L2 3204 3264 -8 952 249 15 0 chrX 156450149 156450354 -6149576 - MIR SINE MIR -21 241 34 203 300 80 60 chrX 156450626 156450726 -6149204 + L2 LINE L2 3142 3243 -29 231 312 88 48 chrX 156450923 156451173 -6148757 - L3 LINE CR1 -5 1572 1313 481 248 61 3 chrX 156451848 156452023 -6147907 + MIR3 SINE MIR 1 184 -62 2176 141 128 8 chrX 156452121 156452503 -6147427 + MSTA LTR MaLR 1 428 0 10679 125 6 39 chrX 156452505 156454136 -6145794 + MSTA-int LTR MaLR 3 1580 0 2007 150 134 24 chrX 156454138 156454519 -6145411 + MSTA LTR MaLR 3 425 -3 194 88 0 29 chrX 156455474 156455508 -6144422 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 271 224 105 66 chrX 156456265 156456341 -6143589 - L2 LINE L2 -25 3247 3169 2217 156 45 0 chrX 156456342 156456721 -6143209 + MER57A LTR ERV1 8 403 0 296 323 24 39 chrX 156456739 156456866 -6143064 - MIR3 SINE MIR -49 159 35 1668 170 3 17 chrX 156458115 156458403 -6141527 - AluJo SINE Alu -22 290 7 588 277 48 0 chrX 156458753 156458919 -6141011 + MIR3 SINE MIR 20 193 -15 728 340 64 3 chrX 156459077 156459421 -6140509 - LTR16B LTR ERVL 0 464 100 360 367 39 35 chrX 156459754 156459983 -6139947 - L3 LINE CR1 -5 1572 1343 2870 134 11 29 chrX 156460257 156460711 -6139219 + L1PA16 LINE L1 5711 6156 -10 932 207 95 18 chrX 156461907 156462129 -6137801 + MIR SINE MIR 24 262 0 388 240 35 70 chrX 156462296 156462467 -6137463 - MIR SINE MIR -81 181 17 2549 77 0 0 chrX 156462470 156462780 -6137150 - AluSg SINE Alu 0 310 1 183 279 38 51 chrX 156462879 156462958 -6136972 + L3 LINE CR1 979 1056 -521 25 51 0 0 chrX 156463024 156463063 -6136867 + AT_rich Low_complexity Low_complexity 1 39 0 180 176 0 0 chrX 156463423 156463457 -6136473 + (TA)n Simple_repeat Simple_repeat 1 34 0 3046 153 6 12 chrX 156463735 156464246 -6135684 + L1MA4 LINE L1 5758 6265 -35 607 318 24 5 chrX 156464724 156464935 -6134995 - MIR SINE MIR -30 232 18 2138 73 11 4 chrX 156465028 156465303 -6134627 - L1MA1 LINE L1 -9 6293 6017 375 200 69 55 chrX 156465454 156465599 -6134331 + L1 LINE L1 4902 5048 -1098 * 5692 162 18 56 chrX 156465576 156465694 -6134236 + L1MA9 LINE L1 4166 4287 -2025 2159 124 0 0 chrX 156465694 156466000 -6133930 + AluSc SINE Alu 1 306 -3 5692 162 18 56 chrX 156466000 156466992 -6132938 + L1MA9 LINE L1 4287 5315 -997 1611 183 0 44 chrX 156466992 156467114 -6132816 + AluJo SINE Alu 1 127 -185 1877 154 0 33 chrX 156467114 156467420 -6132510 - AluSx SINE Alu -15 297 2 1611 183 0 44 chrX 156467420 156467592 -6132338 + AluJo SINE Alu 127 282 -30 5692 162 18 56 chrX 156467592 156467976 -6131954 + L1MA9 LINE L1 5315 5593 -719 2270 123 0 0 chrX 156467976 156468285 -6131645 + AluSx SINE Alu 1 309 -3 5692 162 18 56 chrX 156468285 156468484 -6131446 + L1MA9 LINE L1 5593 5798 -514 1649 167 41 2 chrX 156468670 156469067 -6130863 + L1MA9 LINE L1 5781 6290 -22 438 263 136 66 chrX 156469252 156469553 -6130377 + L1ME3 LINE L1 5531 5852 -310 534 307 75 75 chrX 156470862 156471211 -6128719 - L2 LINE L2 0 3272 2924 5152 172 20 65 chrX 156471258 156471454 -6128476 + L1PA14 LINE L1 4125 4328 -1833 2984 30 3 3 chrX 156471454 156471786 -6128144 + L1PA4 LINE L1 5813 6149 -6 5152 172 20 65 chrX 156471786 156472521 -6127409 + L1PA14 LINE L1 4328 5094 -1067 1664 169 12 52 chrX 156472521 156473019 -6126911 + AluJo SINE Alu 1 312 0 5152 172 20 65 chrX 156473019 156473479 -6126451 + L1PA14 LINE L1 5094 5400 -761 934 112 0 8 chrX 156473479 156473613 -6126317 + FLAM_C SINE Alu 1 133 0 5152 172 20 65 chrX 156473613 156474129 -6125801 + L1PA14 LINE L1 5400 5937 -224 21 36 0 0 chrX 156474354 156474382 -6125548 + AT_rich Low_complexity Low_complexity 1 28 0 181 287 109 69 chrX 156474434 156474636 -6125294 - L2 LINE L2 -912 2402 2193 249 258 0 0 chrX 156475216 156475278 -6124652 + (CATCT)n Simple_repeat Simple_repeat 1 62 0 284 310 87 88 chrX 156475300 156475857 -6124073 - L2 LINE L2 -4 3268 2712 189 305 65 81 chrX 156476484 156476730 -6123200 - L2 LINE L2 -482 2832 2591 455 302 32 37 chrX 156477169 156477358 -6122572 - MER5A DNA MER1_type 0 189 2 302 213 16 0 chrX 156478157 156478218 -6121712 - MIR SINE MIR -6 256 195 21 0 0 0 chrX 156478251 156478272 -6121658 + AT_rich Low_complexity Low_complexity 1 21 0 475 196 37 0 chrX 156478272 156478379 -6121551 - L1MA7 LINE L1 -1 6290 6180 589 244 94 0 chrX 156478442 156478569 -6121361 + L2 LINE L2 3133 3271 -1 256 327 109 19 chrX 156478602 156478758 -6121172 + MIR3 SINE MIR 32 201 -7 448 254 88 12 chrX 156479434 156479601 -6120329 - MIR SINE MIR -58 150 4 243 198 74 25 chrX 156479851 156479932 -6119998 + MIR SINE MIR 173 257 -5 396 333 51 24 chrX 156479956 156480331 -6119599 - L1ME4a LINE L1 -45 6076 5692 331 287 226 27 chrX 156480450 156480778 -6119152 - L1ME4a LINE L1 -748 5398 5006 11061 35 0 2 chrX 156481013 156483033 -6116897 - L1PA4 LINE L1 -3 6152 4137 1911 160 4 0 chrX 156483221 156483526 -6116404 - AluJb SINE Alu 0 306 1 324 250 89 57 chrX 156483753 156483877 -6116053 + MIR SINE MIR 23 150 -58 232 250 68 45 chrX 156483922 156484010 -6115920 - MIR SINE MIR -11 251 162 1494 204 3 29 chrX 156484440 156484748 -6115182 - AluJo SINE Alu -12 300 1 365 52 17 35 chrX 156484863 156484921 -6115009 + L1MA3 LINE L1 6240 6296 -9 25 31 0 0 chrX 156484927 156484959 -6114971 + AT_rich Low_complexity Low_complexity 1 32 0 279 350 30 35 chrX 156485201 156485404 -6114526 - L2 LINE L2 0 3313 3112 884 314 139 28 chrX 156485997 156486543 -6113387 - L2 LINE L2 -1372 1942 1280 864 174 0 0 chrX 156486543 156486675 -6113255 - FLAM_A SINE Alu -1 132 1 884 314 139 28 chrX 156486675 156486918 -6113012 - L2 LINE L2 -2034 1280 1065 446 367 77 14 chrX 156488573 156489001 -6110929 - L2 LINE L2 -2273 1041 587 413 307 59 25 chrX 156489276 156489478 -6110452 - MIR SINE MIR -1 261 53 200 176 0 0 chrX 156491363 156491397 -6108533 + CT-rich Low_complexity Low_complexity 1 34 0 252 86 0 0 chrX 156491397 156491432 -6108498 + (TG)n Simple_repeat Simple_repeat 2 36 0 2119 107 13 0 chrX 156491738 156492036 -6107894 + AluSp SINE Alu 1 302 -11 23 33 0 0 chrX 156492471 156492501 -6107429 + AT_rich Low_complexity Low_complexity 1 30 0 386 297 28 35 chrX 156492555 156492700 -6107230 - MIR3 SINE MIR -17 191 48 390 264 42 74 chrX 156492706 156492922 -6107008 + L1MC5 LINE L1 7705 7913 -48 2355 91 3 0 chrX 156492939 156493235 -6106695 + AluSp SINE Alu 1 297 -16 2086 137 7 3 chrX 156493369 156493676 -6106254 + AluSx SINE Alu 1 308 -4 2250 176 45 68 chrX 156493833 156494350 -6105580 + MLT1D LTR MaLR 1 505 0 2546 117 96 10 chrX 156494604 156494998 -6104932 - MSTA LTR MaLR 0 428 1 478 299 49 62 chrX 156495562 156495806 -6104124 - L3 LINE CR1 -1 1576 1336 290 355 0 19 chrX 156496581 156496688 -6103242 + MIR3 SINE MIR 89 193 -15 300 302 0 12 chrX 156497305 156497441 -6102489 + MER5A DNA MER1_type 1 188 -1 207 327 10 39 chrX 156497448 156497552 -6102378 + L2 LINE L2 2549 2649 -665 304 360 48 0 chrX 156497898 156498023 -6101907 + L2 LINE L2 3183 3313 0 2249 112 3 0 chrX 156498432 156498735 -6101195 - AluY SINE Alu -7 304 1 2404 157 77 23 chrX 156498748 156499189 -6100741 + MLT1C LTR MaLR 3 467 0 181 310 11 23 chrX 156499403 156499490 -6100440 - L2 LINE L2 -219 3053 2968 2198 95 3 7 chrX 156499577 156499893 -6100037 + AluSc SINE Alu 1 309 0 342 195 69 0 chrX 156499899 156499986 -6099944 + L1MC5 LINE L1 7811 7903 -58 6975 76 17 3 chrX 156500015 156501418 -6098512 - L1PA8 LINE L1 0 6172 4793 313 287 23 0 chrX 156501424 156501511 -6098419 + L1MC4 LINE L1 6614 6702 -1340 25836 134 17 76 chrX 156501512 156506605 -6093325 - L1P LINE L1 -1350 4796 2 2446 200 55 24 chrX 156507333 156508204 -6091726 + MER63D DNA MER1_type 87 1046 -15 398 258 13 26 chrX 156508282 156508433 -6091497 - L1MC5 LINE L1 -50 7911 7763 304 369 39 17 chrX 156509103 156509282 -6090648 - MER5A DNA MER1_type 0 189 7 459 242 219 33 chrX 156509579 156509794 -6090136 - MIR SINE MIR -6 256 2 989 90 19 6 chrX 156509929 156510085 -6089845 - L1MB3 LINE L1 -4 6179 6022 186 43 0 0 chrX 156510639 156510662 -6089268 + (CCCCCT)n Simple_repeat Simple_repeat 1 23 0 299 364 21 14 chrX 156512325 156512468 -6087462 - MIR3 SINE MIR -63 145 2 5796 189 77 26 chrX 156513082 156514797 -6085133 + L1MA3 LINE L1 4487 6305 0 352 259 176 31 chrX 156514838 156515031 -6084899 + L1MC4a LINE L1 5177 5397 -749 215 319 11 11 chrX 156515163 156515257 -6084673 + (TA)n Simple_repeat Simple_repeat 2 95 0 290 265 136 25 chrX 156515508 156515670 -6084260 + L1MC4a LINE L1 5703 5882 -1926 261 313 56 56 chrX 156515995 156516155 -6083775 - L2 LINE L2 0 3272 3113 557 306 101 34 chrX 156516156 156516483 -6083447 - L2 LINE L2 -880 2434 2086 21 0 0 0 chrX 156516838 156516859 -6083071 + AT_rich Low_complexity Low_complexity 1 21 0 499 251 85 10 chrX 156516912 156517111 -6082819 - L1ME LINE L1 -343 5778 5565 320 225 152 19 chrX 156517206 156517423 -6082507 - L1P LINE L1 -737 5414 5176 226 260 27 14 chrX 156517614 156517687 -6082243 - L1ME LINE L1 -1311 4835 4762 1945 91 0 25 chrX 156517688 156517866 -6082064 - AluSp SINE Alu -2 311 141 2410 73 13 3 chrX 156517866 156518169 -6081761 - AluY SINE Alu -5 306 1 1945 91 0 25 chrX 156518169 156518265 -6081665 - AluSp SINE Alu -172 141 44 194 98 49 0 chrX 156518432 156518473 -6081457 + (GTTTG)n Simple_repeat Simple_repeat 3 45 0 182 287 115 32 chrX 156519646 156519803 -6080127 - L3 LINE CR1 -295 1282 1113 1073 268 48 69 chrX 156519813 156520782 -6079148 + L1MEc LINE L1 1531 2478 -3918 255 325 12 12 chrX 156520792 156520872 -6079058 - MIR3 SINE MIR -51 157 78 534 246 47 21 chrX 156521511 156521702 -6078228 - L1ME1 LINE L1 -6 6160 5965 256 159 0 0 chrX 156521749 156521793 -6078137 - HsTC2 DNA Tc2 -1 1897 1854 * 348 241 0 0 chrX 156521765 156521848 -6078082 - HsTC2 DNA Tc2 -1811 87 5 2500 64 0 3 chrX 156522543 156522855 -6077075 + AluY SINE Alu 1 311 0 1044 167 20 20 chrX 156523129 156523333 -6076597 + MER20 DNA MER1_type 16 219 0 263 287 111 28 chrX 156523387 156523495 -6076435 + MIR SINE MIR 56 172 -90 411 260 10 10 chrX 156523528 156523628 -6076302 + MIR SINE MIR 59 158 -104 1328 193 107 36 chrX 156524174 156524217 -6075713 - MLT2B1 LTR ERVL 0 520 481 330 26 0 0 chrX 156524217 156524256 -6075674 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 360 43 0 0 chrX 156524255 156524301 -6075629 + (TG)n Simple_repeat Simple_repeat 2 47 0 1328 193 107 36 chrX 156524256 156524641 -6075289 - MLT2B1 LTR ERVL -39 481 110 611 84 14 0 chrX 156524650 156524793 -6075137 - L1MA5A LINE L1 -10 6287 5983 652 194 8 24 chrX 156524798 156524922 -6075008 + FLAM_A SINE Alu 1 122 -11 376 144 0 144 chrX 156524936 156525047 -6074883 - MLT2B1 LTR ERVL -425 95 1 254 279 86 71 chrX 156525052 156525192 -6074738 - MIR SINE MIR -92 170 29 543 215 25 77 chrX 156525192 156525374 -6074556 + MIR3 SINE MIR 30 202 -6 300 300 45 27 chrX 156525785 156525895 -6074035 - L2 LINE L2 0 3272 3161 434 284 34 69 chrX 156525999 156526203 -6073727 - MIR SINE MIR -46 216 20 268 200 114 57 chrX 156526665 156526770 -6073160 + MIR SINE MIR 47 157 -105 464 279 16 0 chrX 156526884 156527006 -6072924 + MIR3 SINE MIR 77 200 -8 1366 260 27 47 chrX 156527744 156528232 -6071698 + MER74B LTR ERVL 69 546 -76 254 242 42 32 chrX 156528153 156528248 -6071682 - MER88 LTR ERVL -290 174 79 * 252 292 132 61 chrX 156528415 156528840 -6071090 + L2 LINE L2 2394 2848 -466 431 263 30 0 chrX 156529080 156529179 -6070751 - MIR SINE MIR -100 162 61 418 365 91 26 chrX 156529503 156529886 -6070044 + L2 LINE L2 1702 2109 -1205 588 333 34 6 chrX 156529895 156530072 -6069858 + L3 LINE CR1 1394 1575 -2 301 228 22 33 chrX 156530860 156530952 -6068978 - L1ME LINE L1 -5934 136 46 2267 102 3 0 chrX 156534152 156534456 -6065474 + AluSp SINE Alu 1 305 -8 186 43 0 0 chrX 156535455 156535478 -6064452 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2319 61 0 0 chrX 156535478 156535778 -6064152 - AluY SINE Alu 0 300 1 1099 224 123 40 chrX 156536245 156536663 -6063267 - MLT1E1 LTR MaLR -232 399 1 23 33 0 0 chrX 156536974 156537004 -6062926 + AT_rich Low_complexity Low_complexity 1 30 0 1647 110 0 0 chrX 156537043 156537271 -6062659 + AluSg/x SINE Alu 83 310 0 611 247 16 6 chrX 156537368 156537565 -6062365 + L1ME LINE L1 92 279 -5939 991 202 65 38 chrX 156537660 156538032 -6061898 + L1ME LINE L1 839 1220 -5176 1121 277 69 12 chrX 156538458 156538877 -6061053 + L1MC4a LINE L1 37 479 -5917 279 139 0 0 chrX 156538887 156538930 -6061000 + MLT1A1 LTR MaLR 323 365 0 234 261 0 0 chrX 156538934 156539003 -6060927 + L1MC4a LINE L1 3433 3501 -2714 642 255 52 21 chrX 156539123 156539452 -6060478 + L1MC4a LINE L1 5020 5358 -857 506 134 0 0 chrX 156539459 156539541 -6060389 + L1PB4 LINE L1 6074 6155 -1 304 394 119 0 chrX 156539662 156539939 -6059991 - L2 LINE L2 -583 2731 2422 2099 135 3 3 chrX 156539986 156540282 -6059648 + AluJb SINE Alu 1 296 -16 528 247 90 10 chrX 156540457 156540648 -6059282 + MIR SINE MIR 42 250 -12 1263 225 57 50 chrX 156541349 156541771 -6058159 + L1MC4a LINE L1 5542 5966 -1911 2005 224 16 89 chrX 156541781 156542474 -6057456 + L1M4 LINE L1 16 657 -5885 2155 202 43 70 chrX 156542505 156543233 -6056697 + L1M4 LINE L1 5194 5901 -743 242 186 0 17 chrX 156543257 156543316 -6056614 - L1M4c LINE L1 -4739 1907 1850 1569 129 60 86 chrX 156543318 156543457 -6056473 - MER44D DNA MER2_type -1882 609 468 5202 87 6 1 chrX 156543457 156544166 -6055764 + L1PA10 LINE L1 5456 6167 -1 1569 129 60 86 chrX 156544166 156544374 -6055556 - MER44D DNA MER2_type -2023 468 1 2093 202 35 27 chrX 156544382 156544649 -6055281 - L1M4c LINE L1 -4813 1833 1570 1146 188 43 128 chrX 156544649 156545048 -6054882 + MLT1A1 LTR MaLR 1 365 0 2093 202 35 27 chrX 156545048 156545490 -6054440 - L1M4c LINE L1 -5076 1570 1111 327 293 19 0 chrX 156545495 156545601 -6054329 - L1M4 LINE L1 -2958 3188 3081 2361 81 3 3 chrX 156545605 156545912 -6054018 - AluSc SINE Alu -2 307 1 189 107 0 0 chrX 156545934 156545962 -6053968 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 559 170 21 0 chrX 156545966 156546060 -6053870 - FRAM SINE Alu -30 146 51 2279 231 22 84 chrX 156546060 156546076 -6053854 - L1M4 LINE L1 -3040 3106 3091 2028 132 10 10 chrX 156546076 156546387 -6053543 - AluSx SINE Alu -1 311 1 2279 231 22 84 chrX 156546387 156547359 -6052571 - L1M4 LINE L1 -3055 3091 2179 861 140 40 0 chrX 156547370 156547520 -6052410 - L1MA3 LINE L1 0 6305 6150 2139 182 2 0 chrX 156547520 156547949 -6051981 + L1 LINE L1 4864 5293 -853 5094 127 15 25 chrX 156547953 156548870 -6051060 - L1MA3 LINE L1 -144 6161 5254 526 311 115 39 chrX 156548977 156549334 -6050596 - L1M1 LINE L1 -1088 6477 6094 2040 201 15 9 chrX 156549380 156549838 -6050092 - L1M1 LINE L1 -2139 5426 4966 * 6308 173 34 43 chrX 156549837 156551520 -6048410 + L1PA16 LINE L1 3663 5332 -834 2366 97 0 0 chrX 156551520 156551819 -6048111 + AluSx SINE Alu 1 299 -13 6308 173 34 43 chrX 156551819 156552645 -6047285 + L1PA16 LINE L1 5332 6163 -3 1573 203 40 0 chrX 156552646 156553041 -6046889 - L1M1 LINE L1 -2592 4973 4563 * 35319 82 4 9 chrX 156553025 156559188 -6040742 - L1PA5 LINE L1 0 6154 11 4575 173 31 42 chrX 156559196 156560471 -6039459 - L1M1 LINE L1 -2969 4596 3331 6072 106 55 8 chrX 156560527 156561589 -6038341 - L1PA13 LINE L1 -8 6155 5064 2320 141 6 0 chrX 156561571 156561934 -6037996 - L1MA3 LINE L1 -623 5682 5318 * 4415 83 13 2 chrX 156561934 156562532 -6037398 + L1MA3 LINE L1 5688 6305 0 5942 158 15 9 chrX 156562532 156563838 -6036092 + L1MA4 LINE L1 4979 6293 -7 1679 141 7 24 chrX 156563890 156564187 -6035743 - L1PA13 LINE L1 -1056 5090 4799 * 15666 147 109 68 chrX 156564182 156564575 -6035355 - L1M1 LINE L1 -4216 3349 2974 5528 113 10 6 chrX 156564575 156565406 -6034524 - L1MA3 LINE L1 0 6305 5472 15666 147 109 68 chrX 156565406 156565704 -6034226 - L1M1 LINE L1 -4591 2974 2690 860 162 0 0 chrX 156565704 156565840 -6034090 + FLAM_C SINE Alu 1 136 -7 15666 147 109 68 chrX 156565840 156568217 -6031713 - L1M1 LINE L1 -4875 2690 14 4185 172 72 38 chrX 156568219 156568364 -6031566 - L1MCb LINE L1 -3969 2595 2456 1329 147 166 49 chrX 156568364 156568690 -6031240 - THE1B LTR MaLR 0 364 1 4185 172 72 38 chrX 156568690 156570480 -6029450 - L1MCb LINE L1 -4108 2456 502 2909 195 32 11 chrX 156570486 156571111 -6028819 + L1MB5 LINE L1 5537 6174 0 240 35 0 0 chrX 156571136 156571165 -6028765 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 998 233 43 102 chrX 156571324 156571390 -6028540 + L1ME3 LINE L1 5813 5881 -283 689 214 8 0 chrX 156571390 156571521 -6028409 + FLAM_A SINE Alu 1 132 -1 998 233 43 102 chrX 156571521 156571827 -6028103 + L1ME3 LINE L1 5881 6163 -1 * 2944 238 75 38 chrX 156571823 156572611 -6027319 + L1ME3 LINE L1 4762 5625 -537 2658 99 6 3 chrX 156572611 156572974 -6026956 + THE1B LTR MaLR 1 364 0 2944 238 75 38 chrX 156572974 156573526 -6026404 + L1ME3 LINE L1 5625 6155 -7 925 207 55 63 chrX 156573536 156573746 -6026184 + L1ME3 LINE L1 5675 5885 -277 3178 158 24 4 chrX 156573746 156574297 -6025633 + L1MB4 LINE L1 5613 6174 -6 925 207 55 63 chrX 156574297 156574499 -6025431 + L1ME3 LINE L1 5885 6162 0 354 285 26 12 chrX 156575962 156576090 -6023840 - MIR SINE MIR -60 148 21 30 45 0 0 chrX 156579648 156579692 -6020238 + AT_rich Low_complexity Low_complexity 1 44 0 218 128 0 51 chrX 156580531 156580570 -6019360 + (GGAGAA)n Simple_repeat Simple_repeat 3 39 0 25 0 0 0 chrX 156581130 156581155 -6018775 + GC_rich Low_complexity Low_complexity 1 25 0 205 138 0 0 chrX 156581397 156581426 -6018504 + (CCG)n Simple_repeat Simple_repeat 2 30 0 1476 62 0 0 chrX 156584896 156585074 -6014856 + AluYa5 SINE Alu 127 304 -7 314 177 0 16 chrX 156585627 156585689 -6014241 - MIR SINE MIR -64 144 84 233 56 0 28 chrX 156585766 156585802 -6014128 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2465 77 0 6 chrX 156585808 156586121 -6013809 - AluY SINE Alu 0 311 1 2745 136 17 21 chrX 156586211 156586689 -6013241 - L1MB7 LINE L1 -16 6168 5693 802 251 15 0 chrX 156587156 156587355 -6012575 + MIR SINE MIR 60 261 -1 1305 165 20 20 chrX 156588561 156588815 -6011115 - MIR SINE MIR 0 262 9 415 283 50 33 chrX 156588859 156589039 -6010891 - MER5A DNA MER1_type 0 189 7 725 170 123 18 chrX 156589358 156589529 -6010401 + MER53 DNA DNA 1 189 0 2271 108 8 47 chrX 156590910 156591271 -6008659 - THE1A LTR MaLR -8 347 1 2304 104 0 0 chrX 156591544 156591917 -6008013 - AluSg SINE Alu 0 373 1 463 257 34 17 chrX 156592585 156592760 -6007170 - L1M4 LINE L1 -1033 5113 4936 * 4443 191 28 19 chrX 156592745 156592841 -6007089 - L1M4 LINE L1 -1631 4515 4421 2294 122 0 0 chrX 156592841 156593153 -6006777 - AluSx SINE Alu 0 312 1 4443 191 28 19 chrX 156593153 156594081 -6005849 - L1M4 LINE L1 -1725 4421 3481 225 326 23 23 chrX 156594404 156594490 -6005440 - L1ME LINE L1 -5982 88 3 369 288 90 85 chrX 156594560 156594925 -6005005 - HAL1 LINE L1 -2130 377 11 737 276 41 27 chrX 156594934 156595227 -6004703 + L2 LINE L2 1822 2118 -1196 1138 128 36 36 chrX 156596105 156596301 -6003629 + MER3 DNA MER1_type 1 196 -13 331 235 53 82 chrX 156596153 156596323 -6003607 - MER3 DNA MER1_type -8 201 37 * 1813 270 82 52 chrX 156596561 156597221 -6002709 - MER115 DNA AcHobo -9 684 5 413 347 4 28 chrX 156598219 156598467 -6001463 + MIR SINE MIR 18 259 -3 6835 79 4 1 chrX 156598832 156600735 -5999195 + L1PA12 LINE L1 4213 6168 0 1270 207 17 36 chrX 156600743 156600810 -5999120 + MLT1B LTR MaLR 108 175 -251 491 30 0 15 chrX 156600810 156600876 -5999054 + (GA)n Simple_repeat Simple_repeat 2 66 0 1270 207 17 36 chrX 156600876 156601096 -5998834 + MLT1B LTR MaLR 175 426 0 1096 220 32 57 chrX 156601123 156601437 -5998493 + MLT1C LTR MaLR 76 381 -86 804 141 50 0 chrX 156601570 156601691 -5998239 - FLAM_C SINE Alu -6 127 1 2152 125 0 0 chrX 156601715 156602019 -5997911 - AluSq SINE Alu -1 312 9 778 274 66 0 chrX 156602345 156602557 -5997373 + MIR SINE MIR 21 246 -16 1826 109 26 30 chrX 156603038 156603304 -5996626 + AluSx SINE Alu 23 287 -25 264 301 41 65 chrX 156603902 156604025 -5995905 - MIR3 SINE MIR -3 205 86 182 61 0 30 chrX 156604591 156604624 -5995306 + (CA)n Simple_repeat Simple_repeat 2 33 0 364 324 0 9 chrX 156605904 156606012 -5993918 + MIR3 SINE MIR 15 121 -87 1917 140 23 20 chrX 156606278 156606578 -5993352 + AluJb SINE Alu 1 301 -11 21 57 0 0 chrX 156607484 156607519 -5992411 + AT_rich Low_complexity Low_complexity 1 35 0 836 289 95 25 chrX 156607521 156608461 -5991469 + L1MEc LINE L1 170 1385 -5178 438 264 32 13 chrX 156608463 156608618 -5991312 + L1MEc LINE L1 1290 1447 -4937 * 4129 142 73 5 chrX 156608615 156609181 -5990749 + L1MA4A LINE L1 4696 5222 -1081 198 0 0 0 chrX 156609181 156609203 -5990727 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4129 142 73 5 chrX 156609203 156609892 -5990038 + L1MA4A LINE L1 5222 6030 -273 2041 115 48 25 chrX 156609891 156610248 -5989682 + THE1C LTR MaLR 11 375 0 * 422 183 0 0 chrX 156610284 156610366 -5989564 + L1MA4A LINE L1 6197 6278 -25 2731 237 71 23 chrX 156610447 156611569 -5988361 + L1ME2 LINE L1 4975 6154 -10 275 246 90 0 chrX 156611744 156611866 -5988064 + L1ME3A LINE L1 5255 5387 -759 547 133 59 111 chrX 156611922 156612057 -5987873 + L1MD2 LINE L1 5756 5883 -476 1778 246 63 8 chrX 156612073 156612561 -5987369 + L1ME3A LINE L1 5586 6100 -70 6844 168 21 5 chrX 156612755 156614935 -5984995 - L1PA16 LINE L1 -3 6163 3951 971 321 29 69 chrX 156615389 156615413 -5984517 - LTR67 LTR ERVL 0 557 534 15519 62 3 3 chrX 156615413 156617014 -5982916 + L1PA6 LINE L1 3432 5037 -1117 2527 76 0 0 chrX 156617014 156617316 -5982614 + AluY SINE Alu 1 302 -9 15519 62 3 3 chrX 156617316 156618435 -5981495 + L1PA6 LINE L1 5036 6154 0 971 321 29 69 chrX 156618435 156618959 -5980971 - LTR67 LTR ERVL -23 534 31 259 239 113 14 chrX 156618987 156619058 -5980872 + L2 LINE L2 3234 3311 -2 6895 129 39 3 chrX 156619302 156620368 -5979562 + Tigger1 DNA MER2_type 1 1105 -1313 3068 126 28 0 chrX 156620390 156620852 -5979078 + Tigger1 DNA MER2_type 1290 1764 -654 2968 142 52 15 chrX 156620852 156621331 -5978599 + LOR1a LTR ERV1 1 497 0 15781 102 35 16 chrX 156621331 156621649 -5978281 + LOR1a-int LTR ERV1 1 312 -7808 252 0 0 0 chrX 156621649 156621677 -5978253 + (TG)n Simple_repeat Simple_repeat 2 29 0 15781 102 35 16 chrX 156621677 156623875 -5976055 + LOR1a-int LTR ERV1 312 2643 -5477 222 222 0 0 chrX 156623881 156623935 -5975995 + (TA)n Simple_repeat Simple_repeat 1 54 0 490 169 25 42 chrX 156623938 156624056 -5975874 - LOR1-int LTR ERV1 -6071 2049 1934 261 180 0 0 chrX 156624063 156624113 -5975817 + (TG)n Simple_repeat Simple_repeat 1 50 0 7094 107 14 3 chrX 156624113 156625151 -5974779 + LOR1a-int LTR ERV1 2628 3676 -4444 8906 116 120 12 chrX 156625157 156625170 -5974760 - Tigger4(Zombi) DNA MER2_type -173 2558 2548 2174 111 10 3 chrX 156625170 156625458 -5974472 - AluSx SINE Alu -22 290 1 8906 116 120 12 chrX 156625458 156626850 -5973080 - Tigger4(Zombi) DNA MER2_type -183 2548 1001 822 50 0 0 chrX 156626850 156626950 -5972980 + LOR1a-int LTR ERV1 3684 3783 -4337 466 221 8 33 chrX 156627145 156627267 -5972663 + LOR1a-int LTR ERV1 4027 4145 -2186 * 2052 109 0 7 chrX 156627255 156627531 -5972399 + LOR1a-int LTR ERV1 3777 4050 -4070 1543 126 0 0 chrX 156627701 156627916 -5972014 + LOR1a-int LTR ERV1 6829 7043 -1077 373 145 16 0 chrX 156627916 156627978 -5971952 + MER72 LTR ERV1 10 72 -650 4095 112 12 11 chrX 156627978 156628848 -5971082 + LOR1a-int LTR ERV1 7168 8120 0 2864 135 68 19 chrX 156628848 156629322 -5970608 + LOR1a LTR ERV1 1 497 0 4530 90 42 6 chrX 156629322 156629957 -5969973 + Tigger1 DNA MER2_type 1761 2418 0 271 317 83 0 chrX 156630188 156630308 -5969622 + MIR SINE MIR 132 261 -1 629 243 60 115 chrX 156630418 156631234 -5968696 - LTR41 LTR ERVL 0 795 1 808 218 57 89 chrX 156631244 156631492 -5968438 + MIR SINE MIR 2 241 -21 21 36 0 0 chrX 156631568 156631596 -5968334 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 156631602 156631627 -5968303 + AT_rich Low_complexity Low_complexity 1 25 0 714 187 45 7 chrX 156631672 156631827 -5968103 - L1PB4 LINE L1 -44 6112 5952 2618 142 3 0 chrX 156631855 156632242 -5967688 - L1PB4 LINE L1 0 6156 5769 2771 136 15 0 chrX 156632242 156632642 -5967288 - L1PA15 LINE L1 0 6165 5754 2564 96 42 0 chrX 156632642 156632994 -5966936 - L1PA8 LINE L1 -3 6169 5801 4834 69 2 0 chrX 156633000 156633583 -5966347 - L1PA8 LINE L1 0 6172 5589 1016 117 14 0 chrX 156633583 156633728 -5966202 - L1PA8 LINE L1 -413 5748 5602 * 3509 197 44 8 chrX 156633725 156634164 -5965766 - L1 LINE L1 -2931 3215 2734 24499 63 5 1 chrX 156634164 156637969 -5961961 - L1PA6 LINE L1 0 6154 2336 3509 197 44 8 chrX 156637969 156638304 -5961626 - L1 LINE L1 -3412 2734 2413 927 207 203 30 chrX 156639129 156639400 -5960530 - MLT1D LTR MaLR 0 505 188 280 104 21 188 chrX 156639465 156639501 -5960429 - MLT1D LTR MaLR -286 219 207 2562 56 7 7 chrX 156639501 156639807 -5960123 - AluY SINE Alu -5 306 1 280 104 21 188 chrX 156639807 156639866 -5960064 - MLT1D LTR MaLR -298 207 140 804 139 21 21 chrX 156639875 156640019 -5959911 - MLT1D LTR MaLR -340 165 22 180 303 237 0 chrX 156640205 156640281 -5959649 - MIR SINE MIR -116 146 53 478 127 13 13 chrX 156640388 156640467 -5959463 + MLT1C LTR MaLR 372 450 -17 1587 182 151 14 chrX 156640724 156641075 -5958855 + MLT1C LTR MaLR 69 467 0 813 269 18 35 chrX 156643213 156643440 -5956490 + MIR SINE MIR 7 229 -33 795 274 88 8 chrX 156644046 156644309 -5955621 - L2 LINE L2 -41 3272 2989 4183 188 18 95 chrX 156644331 156645215 -5954715 + L1PA13 LINE L1 1043 1818 -4976 1554 193 33 7 chrX 156645215 156645516 -5954414 + AluJo SINE Alu 4 312 0 4183 188 18 95 chrX 156645516 156645858 -5954072 + L1PA13 LINE L1 1818 2184 -4610 18380 202 31 24 chrX 156645970 156647829 -5952101 + L1PA15 LINE L1 1 1845 -4971 2446 93 0 0 chrX 156647829 156648140 -5951790 + AluSx SINE Alu 1 311 -1 18380 202 31 24 chrX 156648140 156652722 -5947208 + L1PA15 LINE L1 1845 6517 -299 2410 143 40 5 chrX 156652722 156653097 -5946833 + L1PB3 LINE L1 5756 6146 -8 22 0 0 0 chrX 156653269 156653291 -5946639 + AT_rich Low_complexity Low_complexity 1 22 0 1269 295 13 0 chrX 156653291 156653641 -5946289 - L2 LINE L2 -304 3009 2657 1260 150 4 49 chrX 156653810 156654036 -5945894 - MER20 DNA MER1_type -1 218 3 1754 256 105 16 chrX 156654343 156654916 -5945014 - L2 LINE L2 -672 2642 2019 354 221 42 0 chrX 156654978 156655073 -5944857 + LTR50 LTR ERVL 455 553 -242 * 1000 226 207 14 chrX 156655046 156655408 -5944522 + LTR50 LTR ERVL 364 795 0 842 173 62 123 chrX 156655409 156655669 -5944261 - L2 LINE L2 -2544 770 527 1002 35 0 0 chrX 156656157 156656272 -5943658 + L1PA5 LINE L1 6037 6151 -3 1247 241 87 15 chrX 156656909 156657299 -5942631 + L2 LINE L2 2376 2793 -521 3211 182 21 13 chrX 156657299 156657908 -5942022 - MLT1E2 LTR MaLR 0 626 13 1156 333 22 15 chrX 156657920 156658380 -5941550 + L2 LINE L2 2827 3289 -24 908 171 0 13 chrX 156658385 156658543 -5941387 + FRAM SINE Alu 18 173 -3 288 248 64 72 chrX 156658693 156658818 -5941112 - MIR3 SINE MIR -71 137 14 183 80 0 0 chrX 156658834 156658859 -5941071 + (A)n Simple_repeat Simple_repeat 1 25 0 2344 139 56 30 chrX 156659007 156659524 -5940406 - MLT2A2 LTR ERVL 0 554 1 800 268 26 17 chrX 156659698 156659929 -5940001 + MIR SINE MIR 2 234 -28 1129 271 33 50 chrX 156659940 156660106 -5939824 + L2 LINE L2 1647 1814 -1500 2362 95 3 0 chrX 156660106 156660402 -5939528 - AluSp SINE Alu -16 297 1 1129 271 33 50 chrX 156660402 156660734 -5939196 + L2 LINE L2 1814 2144 -1170 2547 155 17 5 chrX 156660734 156661153 -5938777 - MSTB LTR MaLR 0 426 3 1129 271 33 50 chrX 156661153 156661196 -5938734 + L2 LINE L2 2144 2186 -1128 1628 252 43 16 chrX 156661276 156661852 -5938078 - L1M4 LINE L1 -1226 4920 4329 22 0 0 0 chrX 156662091 156662113 -5937817 + AT_rich Low_complexity Low_complexity 1 22 0 455 264 19 39 chrX 156662158 156662313 -5937617 - MIR SINE MIR -40 222 71 265 227 106 0 chrX 156662495 156662561 -5937369 - L2 LINE L2 -213 3059 2987 616 198 9 0 chrX 156662572 156662683 -5937247 + AluJb SINE Alu 2 113 -199 2066 158 59 29 chrX 156662684 156663221 -5936709 + MLT2A2 LTR ERVL 3 552 -2 1020 133 61 39 chrX 156663223 156663403 -5936527 + AluJb SINE Alu 108 291 -21 4209 157 8 35 chrX 156663953 156664899 -5935031 + L1MB7 LINE L1 5098 6018 -166 1517 152 5 0 chrX 156664902 156665212 -5934718 + L1MA10 LINE L1 5126 5436 -743 790 183 0 0 chrX 156665212 156665349 -5934581 + FRAM SINE Alu 35 171 -5 1032 172 89 23 chrX 156665358 156665921 -5934009 + L1MA10 LINE L1 5651 6334 0 818 107 23 15 chrX 156665922 156666053 -5933877 + L1MB7 LINE L1 6048 6179 -5 21 0 0 0 chrX 156666529 156666550 -5933380 + AT_rich Low_complexity Low_complexity 1 21 0 221 261 87 11 chrX 156667007 156667099 -5932831 + MIR SINE MIR 38 136 -72 549 290 19 0 chrX 156667186 156667348 -5932582 - MIR SINE MIR -13 249 85 317 309 70 51 chrX 156667535 156667791 -5932139 + L2 LINE L2 450 710 -2604 1616 291 101 4 chrX 156667800 156668257 -5931673 - MLT2E LTR ERVL 0 628 128 1806 326 63 37 chrX 156668448 156668552 -5931378 - L2 LINE L2 0 3313 3213 1859 171 7 0 chrX 156668552 156668851 -5931079 + AluJo SINE Alu 1 301 -11 1806 326 63 37 chrX 156668851 156669071 -5930859 - L2 LINE L2 -100 3213 3000 2287 102 0 0 chrX 156669071 156669366 -5930564 + AluSq SINE Alu 1 295 -18 1806 326 63 37 chrX 156669366 156670542 -5929388 - L2 LINE L2 -313 3000 1771 2424 245 95 58 chrX 156670785 156671889 -5928041 - L2 LINE L2 -5 3308 2128 2418 197 28 22 chrX 156671889 156672427 -5927503 + L1MB4 LINE L1 5640 6180 0 2424 245 95 58 chrX 156672427 156672642 -5927288 - L2 LINE L2 -1185 2128 1922 186 194 75 119 chrX 156672828 156672895 -5927035 + MIR SINE MIR 58 121 -87 489 52 0 0 chrX 156672941 156672999 -5926931 + HERVL LTR ERVL 3932 3989 -1665 1224 95 63 11 chrX 156672999 156673188 -5926742 - THE1C LTR MaLR -176 199 1 429 284 74 19 chrX 156673225 156673387 -5926543 + MIR SINE MIR 42 212 -50 405 316 103 6 chrX 156673400 156673574 -5926356 - MIR SINE MIR -43 219 29 326 221 121 80 chrX 156674548 156674727 -5925203 + MER20 DNA MER1_type 30 218 -1 309 279 156 29 chrX 156675097 156675437 -5924493 - L2 LINE L2 -939 2375 1993 197 196 89 18 chrX 156675510 156675566 -5924364 + L2 LINE L2 3207 3266 -6 196 264 200 0 chrX 156676583 156676708 -5923222 - MIR3 SINE MIR -19 189 40 1147 250 86 20 chrX 156677431 156678066 -5921864 + L2 LINE L2 2586 3268 -45 375 60 0 0 chrX 156678947 156678997 -5920933 + (CA)n Simple_repeat Simple_repeat 2 51 0 309 245 0 13 chrX 156679194 156679353 -5920577 + (CA)n Simple_repeat Simple_repeat 1 157 0 678 158 0 18 chrX 156679362 156679476 -5920454 + FLAM_C SINE Alu 16 127 -16 26 64 0 0 chrX 156680153 156680200 -5919730 + AT_rich Low_complexity Low_complexity 1 47 0 255 290 32 11 chrX 156680311 156680404 -5919526 + MIR SINE MIR 52 146 -116 21 0 0 0 chrX 156680425 156680446 -5919484 + AT_rich Low_complexity Low_complexity 1 21 0 378 331 41 8 chrX 156680482 156680727 -5919203 + L1M4c LINE L1 1362 1614 -4770 1075 118 13 0 chrX 156680735 156680888 -5919042 + AluSx SINE Alu 1 155 -157 346 326 6 66 chrX 156681263 156681596 -5918334 + L2 LINE L2 2878 3270 -2 353 80 0 0 chrX 156681954 156682004 -5917926 + L1PA12 LINE L1 6119 6168 0 180 345 0 17 chrX 156682713 156682771 -5917159 + MIR SINE MIR 17 73 -135 668 224 0 7 chrX 156682983 156683130 -5916800 - L2 LINE L2 0 3313 3168 1974 115 23 40 chrX 156683537 156683841 -5916089 + AluSx SINE Alu 10 308 -4 332 246 97 30 chrX 156683892 156684026 -5915904 + L1ME4a LINE L1 5979 6121 0 205 246 46 0 chrX 156684458 156684523 -5915407 + GA-rich Low_complexity Low_complexity 3 70 0 270 0 0 0 chrX 156685184 156685214 -5914716 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chrX 156685550 156685570 -5914360 + (A)n Simple_repeat Simple_repeat 1 20 0 2336 146 86 4 chrX 156687362 156687815 -5912115 + L1MB2 LINE L1 5680 6169 -2 653 267 43 11 chrX 156688003 156688440 -5911490 - HAL1 LINE L1 -1850 657 84 341 167 0 0 chrX 156688452 156688506 -5911424 - Tigger5 DNA MER2_type -6 2317 2264 * 380 211 40 0 chrX 156688502 156688578 -5911352 + Tigger5 DNA MER2_type 2242 2320 -3 * 461 211 0 0 chrX 156688578 156688653 -5911277 - Tigger5 DNA MER2_type -2245 78 4 43960 32 21 1 chrX 156688813 156694844 -5905086 + L1HS LINE L1 1 6155 0 207 88 0 0 chrX 156695477 156695511 -5904419 + (CCTAA)n Simple_repeat Simple_repeat 3 36 0 1215 204 106 58 chrX 156695603 156695999 -5903931 - MER96B DNA MER1_type 0 417 3 1359 198 210 26 chrX 156697781 156698196 -5901734 - MLT1D LTR MaLR -2 503 13 2231 102 3 16 chrX 156698573 156698878 -5901052 - AluSq SINE Alu -12 301 1 409 300 25 12 chrX 156698914 156699074 -5900856 + MIR3 SINE MIR 19 180 -28 230 329 7 2 chrX 156699839 156699938 -5899992 + MIR SINE MIR 47 145 -86 406 323 55 6 chrX 156700299 156700463 -5899467 - MIR SINE MIR -71 191 20 182 156 22 0 chrX 156700519 156700564 -5899366 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 926 241 32 32 chrX 156700802 156701055 -5898875 + MIR SINE MIR 9 261 -1 302 271 0 37 chrX 156701578 156701685 -5898245 + MIR SINE MIR 19 121 -141 195 305 46 46 chrX 156702466 156702597 -5897333 - MER5A DNA MER1_type 0 189 59 207 0 0 0 chrX 156703105 156703128 -5896802 + (T)n Simple_repeat Simple_repeat 1 23 0 245 273 0 15 chrX 156703209 156703275 -5896655 + MIR SINE MIR 20 84 -124 188 35 35 0 chrX 156703642 156703671 -5896259 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 236 351 32 52 chrX 156705075 156705323 -5894607 + L3 LINE CR1 900 1142 -435 327 338 40 7 chrX 156705621 156705769 -5894161 + L2 LINE L2 3111 3263 -9 228 278 37 46 chrX 156705876 156705984 -5893946 + L2 LINE L2 3123 3229 -43 872 250 122 108 chrX 156706119 156706856 -5893074 + L1MC4 LINE L1 7295 8041 -1 1087 308 77 35 chrX 156707035 156707890 -5892040 + L1MEd LINE L1 273 1163 -4956 186 43 0 0 chrX 156707890 156707913 -5892017 + (GGGAGA)n Simple_repeat Simple_repeat 3 25 0 468 271 111 26 chrX 156707915 156708292 -5891638 + L1MEd LINE L1 1130 1538 -4591 3344 216 33 30 chrX 156708296 156709240 -5890690 + L1M4 LINE L1 3737 4683 -1463 225 209 35 58 chrX 156709261 156709347 -5890583 - L2 LINE L2 0 3313 3230 21 0 0 0 chrX 156709909 156709930 -5890000 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 132 25 chrX 156709956 156710115 -5889815 - MIR SINE MIR -54 208 33 287 209 0 22 chrX 156711063 156711154 -5888776 + CT-rich Low_complexity Low_complexity 3 91 0 294 341 156 0 chrX 156711157 156711292 -5888638 - L2 LINE L2 -1 3271 3116 287 360 64 30 chrX 156711477 156711680 -5888250 - L2 LINE L2 -20 3252 3043 796 305 21 4 chrX 156712192 156712425 -5887505 + MIR SINE MIR 4 240 -22 619 299 5 32 chrX 156712566 156712783 -5887147 + L2 LINE L2 2152 2362 -952 228 267 128 12 chrX 156714021 156714107 -5885823 + L3 LINE CR1 1415 1510 -67 188 221 324 0 chrX 156714648 156714716 -5885214 + MIR SINE MIR 113 203 -5 4363 65 14 0 chrX 156714804 156715373 -5884557 + L1PA8 LINE L1 5595 6171 -1 404 238 11 22 chrX 156715433 156715614 -5884316 + CT-rich Low_complexity Low_complexity 2 180 0 292 322 49 23 chrX 156715943 156716288 -5883642 - L1MEc LINE L1 -5253 1143 790 637 289 81 33 chrX 156716832 156717540 -5882390 - L1MC5 LINE L1 -944 6864 6132 346 316 94 8 chrX 156717545 156717662 -5882268 - L1MC4a LINE L1 -1695 6113 5987 363 23 0 0 chrX 156717708 156717752 -5882178 + (GA)n Simple_repeat Simple_repeat 1 44 0 281 316 187 22 chrX 156717768 156718223 -5881707 + L2 LINE L2 2446 2975 -339 652 314 44 27 chrX 156719428 156720127 -5879803 + L1ME LINE L1 5039 5744 -377 25 31 0 0 chrX 156720237 156720269 -5879661 + AT_rich Low_complexity Low_complexity 1 32 0 618 251 58 70 chrX 156720461 156720804 -5879126 - L1ME4a LINE L1 -1 6120 5782 4733 163 31 27 chrX 156721306 156721445 -5878485 - L1MA9 LINE L1 0 6312 6175 450 0 0 0 chrX 156721445 156721495 -5878435 + (TG)n Simple_repeat Simple_repeat 1 50 0 4733 163 31 27 chrX 156721495 156721521 -5878409 - L1MA9 LINE L1 -137 6175 6151 2223 109 3 3 chrX 156721521 156721823 -5878107 + AluSg SINE Alu 1 302 -8 4733 163 31 27 chrX 156721823 156722165 -5877765 - L1MA9 LINE L1 -161 6151 5812 206 62 31 0 chrX 156722165 156722197 -5877733 + (TG)n Simple_repeat Simple_repeat 2 34 0 4733 163 31 27 chrX 156722197 156723575 -5876355 - L1MA9 LINE L1 -500 5812 4407 304 306 68 34 chrX 156723672 156723819 -5876111 - MIR3 SINE MIR -36 172 21 295 119 90 0 chrX 156723819 156723886 -5876044 + CT-rich Low_complexity Low_complexity 1 73 0 14769 50 1 5 chrX 156725229 156727214 -5872716 - L1P LINE L1 -2034 4112 2135 273 196 20 0 chrX 156777811 156777862 -5822068 + FRAM/FAM SINE Alu 8 59 -107 504 0 0 0 chrX 156777999 156778055 -5821875 + (TG)n Simple_repeat Simple_repeat 2 57 0 258 279 44 0 chrX 156778177 156778245 -5821685 - FRAM/FAM SINE Alu -95 71 1 186 308 77 41 chrX 156779853 156780022 -5819908 + MIR SINE MIR 57 231 -31 352 189 66 9 chrX 156780372 156780503 -5819427 - AluSp SINE Alu -106 197 129 620 216 137 5 chrX 156780804 156781008 -5818922 - MER45R DNA AcHobo 0 1581 1351 25 65 0 0 chrX 156781498 156781544 -5818386 + AT_rich Low_complexity Low_complexity 1 46 0 253 327 118 0 chrX 156781950 156782060 -5817870 - FLAM_A SINE Alu -5 128 6 364 229 107 49 chrX 156782857 156782979 -5816951 - FLAM_C SINE Alu -2 131 3 303 233 20 140 chrX 156786756 156786906 -5813024 - FLAM_C SINE Alu 0 133 2 471 141 0 0 chrX 156787541 156787619 -5812311 + (TCC)n Simple_repeat Simple_repeat 2 79 0 394 213 79 55 chrX 156787658 156787785 -5812145 - FLAM_C SINE Alu -3 130 1 261 0 0 0 chrX 156787833 156787862 -5812068 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 421 129 86 121 chrX 156788328 156788444 -5811486 - FLAM_C SINE Alu -10 133 22 261 0 0 0 chrX 156788622 156788651 -5811279 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chrX 156788834 156788857 -5811073 + AT_rich Low_complexity Low_complexity 1 23 0 429 274 48 55 chrX 156789059 156789205 -5810725 - MER58A DNA MER1_type 0 145 1 337 206 38 150 chrX 156790027 156790187 -5809743 - MER20 DNA MER1_type -35 184 43 347 266 78 39 chrX 156791225 156791353 -5808577 + FLAM_C SINE Alu 1 133 0 724 297 69 8 chrX 156792389 156792415 -5807515 - L1M4c LINE L1 -4896 1488 1465 255 93 0 0 chrX 156792415 156792458 -5807472 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 724 297 69 8 chrX 156792458 156792795 -5807135 - L1M4c LINE L1 -4919 1465 1103 203 243 0 0 chrX 156793143 156793180 -5806750 + (CATG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chrX 156793497 156793518 -5806412 + AT_rich Low_complexity Low_complexity 1 21 0 315 286 110 0 chrX 156793793 156793884 -5806046 - FLAM_A SINE Alu -32 101 1 21 36 0 0 chrX 156794649 156794677 -5805253 + AT_rich Low_complexity Low_complexity 1 28 0 335 171 52 52 chrX 156795391 156795492 -5804438 - AluSp SINE Alu -106 197 122 262 147 32 137 chrX 156798553 156798648 -5801282 - LTR33 LTR ERVL -398 123 39 297 224 96 45 chrX 156800682 156800838 -5799092 - AluJb SINE Alu 0 302 139 2980 70 0 20 chrX 156801078 156801479 -5798451 - L1P LINE L1 -3768 2378 1986 * 9469 55 0 1 chrX 156801472 156802648 -5797282 + L1P LINE L1 4118 5292 -854 422 270 57 30 chrX 156802839 156803031 -5796899 - MIR SINE MIR -58 150 1 309 200 71 0 chrX 156803279 156803364 -5796566 - MIR SINE MIR -65 197 107 948 134 7 0 chrX 156803959 156804101 -5795829 + FRAM SINE Alu 1 142 -34 977 54 14 14 chrX 156804103 156804250 -5795680 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 231 152 22 0 chrX 156804471 156804517 -5795413 + (TA)n Simple_repeat Simple_repeat 1 47 0 416 302 75 26 chrX 156804519 156804784 -5795146 - L1ME4a LINE L1 -157 5964 5687 296 257 194 28 chrX 156804862 156805006 -5794924 + MER91A DNA MER1_type 29 196 0 273 250 43 11 chrX 156805086 156805178 -5794752 - MIR SINE MIR -51 211 117 238 308 117 33 chrX 156805266 156805539 -5794391 - L1ME4a LINE L1 -2258 5550 5255 309 320 56 56 chrX 156805584 156805781 -5794149 - L1ME4a LINE L1 -1707 4439 4243 509 264 42 40 chrX 156805790 156806133 -5793797 + L1MD2 LINE L1 4394 4740 -1406 221 65 138 0 chrX 156806218 156806356 -5793574 + (TA)n Simple_repeat Simple_repeat 2 158 0 * 506 102 45 45 chrX 156806322 156806499 -5793431 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 321 215 41 58 chrX 156806505 156806677 -5793253 + (TAATG)n Simple_repeat Simple_repeat 5 173 0 283 277 0 0 chrX 156806783 156806866 -5793064 + L1MD2 LINE L1 4936 5018 -1128 727 296 61 27 chrX 156806897 156807225 -5792705 + L1MDa LINE L1 60 398 -6142 3839 191 79 48 chrX 156807333 156808136 -5791794 + L1MD2 LINE L1 4970 5827 -532 2583 158 41 19 chrX 156808136 156808555 -5791375 + MSTC LTR MaLR 1 428 0 3839 191 79 48 chrX 156808555 156809089 -5790841 + L1MD2 LINE L1 5827 6343 -16 272 312 5 84 chrX 156809068 156809283 -5790647 + L1ME1 LINE L1 4981 5178 -968 * 24 106 0 0 chrX 156809384 156809478 -5790452 + AT_rich Low_complexity Low_complexity 1 94 0 738 226 128 21 chrX 156809545 156809779 -5790151 + MIR SINE MIR 2 260 -2 21 57 0 0 chrX 156809886 156809921 -5790009 + AT_rich Low_complexity Low_complexity 1 35 0 363 262 79 75 chrX 156809963 156810211 -5789719 + L1P5 LINE L1 5185 5446 -710 2096 154 75 3 chrX 156810221 156810579 -5789351 - MLT1B LTR MaLR -5 385 2 377 288 68 25 chrX 156810642 156810668 -5789262 + L1ME1 LINE L1 5683 5706 -464 1469 185 0 93 chrX 156810668 156810992 -5788938 + AluJo SINE Alu 1 294 -18 377 288 68 25 chrX 156810992 156811232 -5788698 + L1ME1 LINE L1 5706 5962 -208 24 53 0 0 chrX 156811397 156811435 -5788495 + AT_rich Low_complexity Low_complexity 1 38 0 1755 265 59 47 chrX 156811554 156812131 -5787799 + MLT1E LTR MaLR 3 586 -7 699 255 27 5 chrX 156812142 156812330 -5787600 + L1ME LINE L1 5632 5823 -298 2877 251 67 25 chrX 156812337 156813343 -5786587 + L1ME1 LINE L1 3321 4368 -1778 2186 186 84 43 chrX 156813355 156813937 -5785993 + L1ME1 LINE L1 4685 5290 -856 1865 192 59 71 chrX 156813937 156814052 -5785878 + MLT1D LTR MaLR 1 116 -389 2294 80 33 0 chrX 156814052 156814352 -5785578 + AluY SINE Alu 1 310 -1 1865 192 59 71 chrX 156814352 156814742 -5785188 + MLT1D LTR MaLR 116 500 -5 3691 201 30 42 chrX 156814742 156814842 -5785088 + L1ME1 LINE L1 5282 5382 -784 2039 154 0 3 chrX 156814842 156815154 -5784776 + AluJb SINE Alu 1 311 -1 3691 201 30 42 chrX 156815154 156815446 -5784484 + L1ME1 LINE L1 5382 5676 -490 232 26 26 26 chrX 156815446 156815484 -5784446 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3691 201 30 42 chrX 156815484 156815986 -5783944 + L1ME1 LINE L1 5676 6166 0 1626 204 19 11 chrX 156816122 156816484 -5783446 + MLT1A1 LTR MaLR 1 365 0 792 242 58 31 chrX 156816695 156816955 -5782975 + L2 LINE L2 3045 3311 -2 456 258 52 80 chrX 156817819 156818069 -5781861 + L2 LINE L2 3016 3271 -42 940 243 66 0 chrX 156818069 156818312 -5781618 - MIR SINE MIR 0 262 4 207 0 0 0 chrX 156818316 156818339 -5781591 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 456 258 52 80 chrX 156818339 156818370 -5781560 + L2 LINE L2 3274 3294 -19 343 137 0 49 chrX 156818501 156818603 -5781327 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 560 152 0 9 chrX 156819329 156819434 -5780496 + CT-rich Low_complexity Low_complexity 4 107 0 256 296 0 0 chrX 156819679 156819750 -5780180 + MIR3 SINE MIR 124 194 -14 255 327 9 35 chrX 156820440 156820553 -5779377 - MIR SINE MIR -68 140 31 219 353 149 5 chrX 156820619 156820840 -5779090 + L3 LINE CR1 796 1048 -529 233 248 34 94 chrX 156820880 156820997 -5778933 + L3 LINE CR1 1416 1525 -52 234 62 0 0 chrX 156821879 156821911 -5778019 + (CA)n Simple_repeat Simple_repeat 2 33 0 900 251 138 7 chrX 156821936 156822227 -5777703 + MER67C LTR ERV1 1 329 -381 * 9470 119 11 2 chrX 156822205 156823561 -5776369 + Tigger1 DNA MER2_type 1050 2417 -1 1034 108 24 6 chrX 156823561 156823727 -5776203 + MER67C LTR ERV1 538 706 -4 207 222 0 0 chrX 156823762 156823843 -5776087 + (CA)n Simple_repeat Simple_repeat 2 82 0 274 356 83 8 chrX 156825904 156826036 -5773894 + MIR3 SINE MIR 17 158 -50 2445 32 0 14 chrX 156826495 156826823 -5773107 + AluY SINE Alu 1 324 0 396 239 103 0 chrX 156826974 156827091 -5772839 + MIR3 SINE MIR 29 157 -51 2505 161 41 35 chrX 156827092 156827551 -5772379 + MLT1C LTR MaLR 1 462 -5 1087 101 0 34 chrX 156827588 156827737 -5772193 - AluSg/x SINE Alu -32 277 134 337 219 27 0 chrX 156827795 156827868 -5772062 - L2 LINE L2 0 3313 3239 1328 146 103 73 chrX 156828180 156828509 -5771421 - MER58B DNA MER1_type 0 341 3 23 0 0 0 chrX 156828597 156828620 -5771310 + AT_rich Low_complexity Low_complexity 1 23 0 779 173 0 0 chrX 156828623 156828750 -5771180 - FLAM_C SINE Alu -6 127 1 207 69 0 0 chrX 156829668 156829697 -5770233 + (CCGCG)n Simple_repeat Simple_repeat 4 32 0 247 252 134 25 chrX 156830206 156830325 -5769605 + L2 LINE L2 3181 3312 -1 202 292 94 73 chrX 156830469 156830702 -5769228 - MIR SINE MIR -5 257 20 2722 114 10 2 chrX 156830751 156831154 -5768776 - L1PA15 LINE L1 0 6165 5760 239 191 0 0 chrX 156832305 156832352 -5767578 + Charlie7 DNA MER1_type 44 90 -2522 21 0 0 0 chrX 156832421 156832442 -5767488 + AT_rich Low_complexity Low_complexity 1 21 0 4597 180 47 25 chrX 156832480 156834315 -5765615 - L1MA9 LINE L1 -30 6282 4412 1561 173 48 28 chrX 156834315 156834604 -5765326 - AluJb SINE Alu -17 295 1 4597 180 47 25 chrX 156834604 156834664 -5765266 - L1MA9 LINE L1 -1900 4412 4355 773 199 28 42 chrX 156834670 156834759 -5765171 - L1M4 LINE L1 -2202 3944 3855 1997 133 28 0 chrX 156834759 156835045 -5764885 - AluSx SINE Alu -18 294 1 773 199 28 42 chrX 156835045 156835213 -5764717 - L1M4 LINE L1 -2291 3855 3600 2407 70 7 3 chrX 156836640 156836938 -5762992 - AluSq SINE Alu -14 299 1 2275 74 0 7 chrX 156836973 156837283 -5762647 - AluY SINE Alu 0 308 1 21 57 0 0 chrX 156838398 156838433 -5761497 + AT_rich Low_complexity Low_complexity 1 35 0 408 238 25 16 chrX 156838651 156838773 -5761157 - L1ME4a LINE L1 0 6121 5999 2249 98 6 16 chrX 156838928 156839244 -5760686 - AluSq SINE Alu 0 313 1 2363 102 0 0 chrX 156840441 156840754 -5759176 - AluSq SINE Alu 0 313 1 306 234 65 65 chrX 156842495 156842619 -5757311 + MER5A DNA MER1_type 1 143 -46 2080 93 68 0 chrX 156842619 156842897 -5757033 + AluSc SINE Alu 1 297 -12 306 234 65 65 chrX 156842897 156842944 -5756986 + MER5A DNA MER1_type 143 189 0 655 238 240 15 chrX 156843623 156844202 -5755728 + L2 LINE L2 2555 3257 -56 323 89 44 0 chrX 156845109 156845154 -5754776 + MLT1E1 LTR MaLR 1 47 -607 2465 139 8 10 chrX 156845194 156845583 -5754347 - MLT1B LTR MaLR -2 388 1 481 249 11 85 chrX 156845595 156845772 -5754158 + MLT1D LTR MaLR 1 164 -341 835 234 121 103 chrX 156845786 156846226 -5753704 + MLT1D LTR MaLR 1 452 -53 855 78 94 8 chrX 156846226 156846354 -5753576 + MER85 DNA T2_type 1 139 0 835 234 121 103 chrX 156846354 156846409 -5753521 + MLT1D LTR MaLR 452 505 0 361 245 77 42 chrX 156846409 156846552 -5753378 + MLT1D LTR MaLR 171 318 -187 185 260 40 0 chrX 156846751 156846801 -5753129 + L2 LINE L2 3262 3313 0 29 28 0 0 chrX 156847464 156847500 -5752430 + AT_rich Low_complexity Low_complexity 1 36 0 5536 145 59 9 chrX 156847702 156848655 -5751275 - L1MC2 LINE L1 -2 6342 5343 446 238 66 40 chrX 156848839 156848990 -5750940 + MIR3 SINE MIR 22 176 -32 429 277 84 13 chrX 156850082 156850237 -5749693 - MIR3 SINE MIR -22 186 21 199 291 136 0 chrX 156851103 156851206 -5748724 - L2 LINE L2 -15 3257 3141 252 284 49 39 chrX 156852055 156852157 -5747773 - MIR SINE MIR -52 210 108 191 189 19 0 chrX 156852606 156852659 -5747271 + A-rich Low_complexity Low_complexity 5 58 0 230 258 62 31 chrX 156852804 156852901 -5747029 + L3 LINE CR1 1342 1441 -136 212 125 21 21 chrX 156854958 156855006 -5744924 + A-rich Low_complexity Low_complexity 3 50 0 1763 130 0 35 chrX 156855184 156855468 -5744462 + AluJb SINE Alu 32 305 -7 219 208 42 0 chrX 156855527 156855575 -5744355 + (CATG)n Simple_repeat Simple_repeat 2 51 0 190 341 12 24 chrX 156856663 156856748 -5743182 - L2 LINE L2 0 3272 3189 2169 131 0 6 chrX 156856876 156857190 -5742740 + AluJb SINE Alu 1 312 0 742 143 0 14 chrX 156857191 156857331 -5742599 + (GGA)n Simple_repeat Simple_repeat 2 139 0 2504 108 17 20 chrX 156857755 156858162 -5741768 - L1MA8 LINE L1 0 6291 5886 1234 157 19 11 chrX 156858195 156858510 -5741420 + MLT1F LTR MaLR 168 539 -3 1364 193 15 52 chrX 156858568 156858894 -5741036 - L1MA9 LINE L1 -38 6274 5961 336 174 183 0 chrX 156859325 156859407 -5740523 - MER5A DNA MER1_type -85 104 4 389 247 205 68 chrX 156859575 156860117 -5739813 - L2 LINE L2 -776 2538 1923 482 231 33 16 chrX 156860476 156860597 -5739333 - MIR SINE MIR -118 144 22 1991 265 83 7 chrX 156860823 156861510 -5738420 + L2 LINE L2 2005 2743 -571 2102 130 18 3 chrX 156861736 156862074 -5737856 - MER2 DNA MER2_type 0 344 2 250 284 78 17 chrX 156862356 156862472 -5737458 - MIR3 SINE MIR -4 204 82 187 255 0 0 chrX 156863182 156863229 -5736701 + MIR3 SINE MIR 149 195 -13 1825 141 2 108 chrX 156863319 156863753 -5736177 + MLT1B LTR MaLR 1 388 -2 299 292 116 43 chrX 156864708 156865105 -5734825 + L2 LINE L2 2133 2558 -756 2411 93 0 3 chrX 156866030 156866340 -5733590 + AluSc SINE Alu 1 309 0 825 156 0 0 chrX 156866616 156866751 -5733179 - L1MC1 LINE L1 -19 6314 6180 280 286 28 65 chrX 156866968 156867011 -5732919 - L1MA1 LINE L1 -320 5982 5940 746 264 51 17 chrX 156867011 156867307 -5732623 - L1ME3A LINE L1 -218 5952 5647 984 147 41 0 chrX 156867318 156867515 -5732415 - L1MD3 LINE L1 0 7995 7791 469 259 153 40 chrX 156867515 156867557 -5732373 - MER112 DNA MER1_type -1 259 223 913 202 6 6 chrX 156867557 156867735 -5732195 - MER5B DNA MER1_type 0 178 1 469 259 153 40 chrX 156867735 156867920 -5732010 - MER112 DNA MER1_type -37 223 6 778 261 54 59 chrX 156867925 156868117 -5731813 - L1ME3A LINE L1 -515 5655 5463 1907 135 0 14 chrX 156868117 156868406 -5731524 + AluJb SINE Alu 2 286 -26 778 261 54 59 chrX 156868406 156868837 -5731093 - L1ME3A LINE L1 -707 5463 5026 4682 191 57 16 chrX 156868882 156869048 -5730882 - L1MD2 LINE L1 -17 6342 6184 207 0 0 0 chrX 156869048 156869071 -5730859 + (TG)n Simple_repeat Simple_repeat 2 24 0 4682 191 57 16 chrX 156869071 156870375 -5729555 - L1MD2 LINE L1 -175 6184 4817 371 271 47 0 chrX 156870930 156871037 -5728893 + MIR SINE MIR 32 143 -65 2236 104 3 0 chrX 156871115 156871403 -5728527 - AluSp SINE Alu -18 295 7 682 281 24 0 chrX 156871464 156871628 -5728302 - MIR SINE MIR -13 249 82 298 290 140 0 chrX 156871750 156871857 -5728073 - MIR SINE MIR -98 164 43 * 657 316 78 58 chrX 156871851 156872362 -5727568 + L2 LINE L2 1490 2016 -1298 2337 169 36 5 chrX 156872362 156872781 -5727149 + MSTB1 LTR MaLR 1 432 0 657 316 78 58 chrX 156872781 156872860 -5727070 + L2 LINE L2 2016 2092 -1222 2783 236 24 39 chrX 156872868 156873200 -5726730 - L1MD2 LINE L1 -2343 3803 3468 2067 146 0 0 chrX 156873200 156873501 -5726429 + AluJb SINE Alu 1 301 -11 2783 236 24 39 chrX 156873501 156873528 -5726402 - L1MD2 LINE L1 -2678 3468 3442 2399 109 16 25 chrX 156873528 156873895 -5726035 + THE1B LTR MaLR 1 364 0 2783 236 24 39 chrX 156873895 156874540 -5725390 - L1MD2 LINE L1 -2704 3442 2813 3413 64 2 26 chrX 156874541 156874824 -5725106 + MLT2A1 LTR ERVL 1 289 -155 2714 17 0 0 chrX 156874824 156875124 -5724806 - AluYa5 SINE Alu -11 300 1 3413 64 2 26 chrX 156875124 156875254 -5724676 + MLT2A1 LTR ERVL 289 405 -39 531 0 0 0 chrX 156875254 156875313 -5724617 + (TA)n Simple_repeat Simple_repeat 1 59 0 3413 64 2 26 chrX 156875313 156875353 -5724577 + MLT2A1 LTR ERVL 405 444 0 8308 87 6 1 chrX 156875357 156876453 -5723477 + THE1B-int LTR MaLR 6 1106 -474 410 281 0 23 chrX 156876457 156876585 -5723345 - L1MD2 LINE L1 -3330 2816 2692 * 7103 233 45 19 chrX 156876580 156878899 -5721031 - L1ME3A LINE L1 -1409 4737 2360 1235 221 30 52 chrX 156878907 156879269 -5720661 + MLT1D LTR MaLR 3 356 -149 5784 164 16 16 chrX 156879279 156881307 -5718623 + L1PB4 LINE L1 4133 6156 0 879 171 7 0 chrX 156881310 156881462 -5718468 + MLT1D LTR MaLR 353 505 0 2402 125 0 3 chrX 156881493 156881860 -5718070 - L1PB1 LINE L1 -3 6148 5783 408 69 95 17 chrX 156881860 156882376 -5717554 + (TA)n Simple_repeat Simple_repeat 1 556 0 37 0 0 0 chrX 156882377 156882414 -5717516 + AT_rich Low_complexity Low_complexity 1 37 0 453 56 31 62 chrX 156882424 156882584 -5717346 + (TTATA)n Simple_repeat Simple_repeat 5 159 0 371 148 57 0 chrX 156882586 156882821 -5717109 + (TA)n Simple_repeat Simple_repeat 1 248 0 11507 185 15 6 chrX 156882822 156884195 -5715735 - L1PB1 LINE L1 -360 5791 4431 450 0 0 0 chrX 156884195 156884245 -5715685 + (TTA)n Simple_repeat Simple_repeat 2 51 0 11507 185 15 6 chrX 156884245 156885839 -5714091 - L1PB1 LINE L1 -1720 4431 2798 514 180 126 78 chrX 156885877 156886083 -5713847 - L2 LINE L2 -1 3312 3097 23 33 0 0 chrX 156886231 156886261 -5713669 + AT_rich Low_complexity Low_complexity 1 30 0 1847 137 27 0 chrX 156886293 156886593 -5713337 + L1MA4A LINE L1 5684 5991 -312 * 4033 197 9 1 chrX 156886591 156887402 -5712528 + L1 LINE L1 2236 3052 -3094 3708 169 36 52 chrX 156887590 156889049 -5710881 - L1MB7 LINE L1 -228 5956 4474 2319 67 0 27 chrX 156889049 156889348 -5710582 + AluY SINE Alu 1 291 -20 2705 14 0 0 chrX 156889352 156889649 -5710281 + AluY SINE Alu 1 297 -14 3708 169 36 52 chrX 156889649 156889660 -5710270 - L1MB7 LINE L1 -1713 4471 4461 1576 170 57 3 chrX 156889660 156889943 -5709987 + AluJo SINE Alu 1 298 -14 3708 169 36 52 chrX 156889943 156890082 -5709848 - L1MB7 LINE L1 -1723 4461 4373 325 219 52 0 chrX 156890086 156890182 -5709748 - L1MCa LINE L1 -5302 1124 1024 * 1868 82 0 30 chrX 156890167 156890182 -5709748 + L1PB1 LINE L1 5614 5628 -523 1984 96 0 0 chrX 156890182 156890453 -5709477 - L1PB1 LINE L1 0 6151 5881 1868 82 0 30 chrX 156890453 156890705 -5709225 + L1PB1 LINE L1 5628 5873 -278 280 273 34 11 chrX 156890771 156890859 -5709071 + L2 LINE L2 3217 3306 -7 1068 174 160 14 chrX 156890965 156891002 -5708928 - MER5C DNA MER1_type -1 323 293 2090 69 14 0 chrX 156891002 156891278 -5708652 + L1PA13 LINE L1 5878 6157 -6 1068 174 160 14 chrX 156891278 156891522 -5708408 - MER5C DNA MER1_type -31 293 1 2171 105 0 3 chrX 156892548 156892883 -5707047 + AluSx SINE Alu 1 334 0 1145 124 9 57 chrX 156892884 156893094 -5706836 + MLT1B LTR MaLR 3 202 -188 190 304 14 14 chrX 156893098 156893167 -5706763 - L2 LINE L2 -52 3261 3193 462 277 184 25 chrX 156893249 156893527 -5706403 - L2 LINE L2 0 3272 2951 500 273 55 0 chrX 156893981 156894109 -5705821 + L2 LINE L2 3179 3313 0 195 247 0 0 chrX 156895024 156895097 -5704833 + (CCTG)n Simple_repeat Simple_repeat 4 76 0 377 383 23 1 chrX 156895908 156896081 -5703849 - MIR3 SINE MIR -62 146 1 488 265 61 0 chrX 156896375 156896507 -5703423 - MIR3 SINE MIR -6 202 63 304 254 16 56 chrX 156896737 156896863 -5703067 + MIR SINE MIR 31 151 -111 231 284 0 0 chrX 156896897 156896971 -5702959 + (TA)n Simple_repeat Simple_repeat 1 74 0 289 203 0 0 chrX 156897848 156897907 -5702023 + L2 LINE L2 3210 3268 -4 1216 181 152 1 chrX 156897926 156898319 -5701611 - Charlie1b DNA MER1_type -50 473 21 937 272 106 34 chrX 156898326 156899125 -5700805 - L1ME LINE L1 -506 5656 4802 591 258 180 16 chrX 156899416 156899672 -5700258 - L1ME3A LINE L1 -219 6020 5723 1721 265 115 34 chrX 156899756 156900815 -5699115 - L1ME3A LINE L1 -2058 4157 3013 2377 241 63 54 chrX 156900829 156901922 -5698008 - L1ME3A LINE L1 -4532 1864 762 1407 159 9 53 chrX 156901922 156902242 -5697688 - L1MB8 LINE L1 0 6178 5873 5445 200 40 16 chrX 156902250 156902927 -5697003 - L1MB8 LINE L1 -382 5802 5143 1545 160 142 12 chrX 156902927 156903259 -5696671 - THE1C LTR MaLR 0 375 1 9333 121 37 36 chrX 156903259 156904834 -5695096 - THE1C-int LTR MaLR 0 1580 4 1609 148 154 18 chrX 156904837 156905167 -5694763 - THE1C LTR MaLR 0 375 1 5445 200 40 16 chrX 156905167 156906235 -5693695 - L1MB8 LINE L1 -1042 5142 4021 6352 128 19 32 chrX 156906236 156907201 -5692729 - L1MC1 LINE L1 0 6333 5382 2560 68 0 0 chrX 156907201 156907509 -5692421 - AluSg SINE Alu -2 308 1 6352 128 19 32 chrX 156907509 156907625 -5692305 - L1MC1 LINE L1 -951 5382 5266 2378 117 23 0 chrX 156907620 156907971 -5691959 - L1PA16 LINE L1 -37 6129 5771 * 361 145 14 0 chrX 156907972 156908041 -5691889 - L1MC1 LINE L1 -882 5264 5195 * 542 181 66 18 chrX 156908040 156908206 -5691724 - L1MB8 LINE L1 -2120 4026 3853 2817 206 10 7 chrX 156908206 156908723 -5691207 + MLT2B3 LTR ERVL 1 409 -44 1402 144 22 56 chrX 156908725 156908995 -5690935 + THE1B LTR MaLR 1 261 -103 504 214 71 0 chrX 156908995 156909107 -5690823 - L1MB8 LINE L1 -2291 3855 3736 1362 292 65 4 chrX 156909108 156909571 -5690359 - L1MEc LINE L1 -5624 772 282 385 271 94 65 chrX 156909582 156909752 -5690178 + MIR3 SINE MIR 9 183 -25 228 291 141 39 chrX 156909857 156909979 -5689951 - MIR SINE MIR -67 141 5 191 259 0 35 chrX 156910001 156910059 -5689871 - L2 LINE L2 0 3313 3258 1898 144 0 4 chrX 156910095 156910372 -5689558 + AluSx SINE Alu 1 276 -36 324 0 0 0 chrX 156910375 156910411 -5689519 + (CA)n Simple_repeat Simple_repeat 1 36 0 315 0 0 0 chrX 156910597 156910632 -5689298 + (T)n Simple_repeat Simple_repeat 1 35 0 2952 226 66 86 chrX 156911058 156911233 -5688697 - L2 LINE L2 0 3313 3136 1742 187 0 14 chrX 156911233 156911527 -5688403 + AluJo SINE Alu 1 290 -22 2952 226 66 86 chrX 156911527 156912591 -5687339 - L2 LINE L2 -177 3136 2089 323 191 36 36 chrX 156912611 156912721 -5687209 + L1ME1 LINE L1 4165 4274 -1872 * 1461 78 10 0 chrX 156912708 156912901 -5687029 - L1P4 LINE L1 -535 5628 5434 493 33 0 0 chrX 156912900 156912961 -5686969 + L1P4 LINE L1 5612 5672 -496 * 3917 78 2 0 chrX 156912961 156913484 -5686446 + L1PA13 LINE L1 5637 6160 -3 3546 220 45 26 chrX 156913488 156914235 -5685695 + L1ME1 LINE L1 4276 5007 -1159 2026 119 81 26 chrX 156914235 156914580 -5685350 + THE1B LTR MaLR 1 364 0 3546 220 45 26 chrX 156914580 156915670 -5684260 + L1ME1 LINE L1 5007 6155 -11 216 229 57 0 chrX 156916757 156916827 -5683103 + L2 LINE L2 2914 2987 -285 310 232 158 12 chrX 156917849 156917931 -5681999 + MIR SINE MIR 41 134 -74 2268 82 0 0 chrX 156918015 156918331 -5681599 - AluSg SINE Alu 0 316 1 5921 42 0 0 chrX 156919909 156920577 -5679353 - L1PA5 LINE L1 -3 6151 5484 190 304 89 45 chrX 156920771 156920883 -5679047 - L3 LINE CR1 -3 1574 1458 215 296 171 0 chrX 156920941 156921029 -5678901 + MIR SINE MIR 88 190 -72 1319 180 132 0 chrX 156922441 156922542 -5677388 + AluJo SINE Alu 13 99 -213 342 0 0 0 chrX 156922542 156922580 -5677350 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1319 180 132 0 chrX 156922580 156922728 -5677202 + AluJo SINE Alu 99 295 -17 449 113 12 0 chrX 156922742 156922820 -5677110 - MER2 DNA MER2_type -135 210 132 1333 95 42 0 chrX 156922820 156923009 -5676921 + MER30 DNA MER1_type 1 197 -33 2003 136 7 0 chrX 156923043 156923337 -5676593 + AluSx SINE Alu 1 296 -16 815 164 8 15 chrX 156923338 156923472 -5676458 - MER2 DNA MER2_type -212 133 1 428 280 72 34 chrX 156923636 156923842 -5676088 + MIR SINE MIR 30 247 -15 257 196 18 18 chrX 156923963 156924019 -5675911 + MIR SINE MIR 92 147 -115 2748 153 59 8 chrX 156924022 156924134 -5675796 - L1MB7 LINE L1 0 6184 6073 1799 219 116 22 chrX 156924134 156924669 -5675261 - L1MD3 LINE L1 -1939 6056 5472 2369 76 13 0 chrX 156925143 156925445 -5674485 - AluSq SINE Alu -7 306 1 252 304 0 11 chrX 156925571 156925663 -5674267 + MIR SINE MIR 158 248 -14 31 26 0 0 chrX 156925769 156925807 -5674123 + AT_rich Low_complexity Low_complexity 1 38 0 3848 213 50 35 chrX 156925809 156927140 -5672790 - L1ME1 LINE L1 -5 6161 4781 3150 199 2 25 chrX 156927140 156927707 -5672223 - MLT2B3 LTR ERVL 0 554 1 3848 213 50 35 chrX 156927707 156928238 -5671692 - L1ME1 LINE L1 -1385 4781 4260 6754 225 62 7 chrX 156928239 156928795 -5671135 - L1ME1 LINE L1 -1927 4219 3695 357 24 0 0 chrX 156928795 156928837 -5671093 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6754 225 62 7 chrX 156928837 156930079 -5669851 - L1ME1 LINE L1 -2451 3695 2321 324 0 0 0 chrX 156930263 156930299 -5669631 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4532 237 47 43 chrX 156931516 156931732 -5668198 + L1ME1 LINE L1 2989 3203 -2963 1427 195 40 30 chrX 156931732 156932030 -5667900 - AluJo SINE Alu -11 301 1 4532 237 47 43 chrX 156932030 156933192 -5666738 + L1ME1 LINE L1 3203 4360 -1806 2216 146 56 23 chrX 156933192 156933583 -5666347 - L1MA10 LINE L1 -3 6331 5928 4532 237 47 43 chrX 156933583 156935295 -5664635 + L1ME1 LINE L1 4360 6163 -3 743 178 22 15 chrX 156935310 156935445 -5664485 + FLAM_C SINE Alu 6 141 -2 630 325 101 16 chrX 156935451 156935875 -5664055 - L2 LINE L2 -626 2688 2229 1807 166 3 7 chrX 156936022 156936317 -5663613 - AluJb SINE Alu -18 294 1 323 351 53 0 chrX 156936370 156936484 -5663446 - L2 LINE L2 -5 3267 3148 345 353 14 14 chrX 156936675 156936814 -5663116 + MIR3 SINE MIR 29 167 -41 2459 56 0 0 chrX 156937478 156937764 -5662166 - L1PA6 LINE L1 0 6154 5869 762 333 74 33 chrX 156938708 156939194 -5660736 + L2 LINE L2 2807 3312 -1 249 327 35 9 chrX 156939363 156939476 -5660454 + MIR SINE MIR 24 139 -69 2955 87 42 14 chrX 156939497 156939547 -5660383 - MLT2A1 LTR ERVL 0 444 397 351 0 0 0 chrX 156939547 156939586 -5660344 + (TC)n Simple_repeat Simple_repeat 2 40 0 342 0 0 0 chrX 156939585 156939623 -5660307 + (TA)n Simple_repeat Simple_repeat 1 38 0 2955 87 42 14 chrX 156939586 156939622 -5660308 - MLT2A1 LTR ERVL -47 397 363 483 63 0 0 chrX 156939622 156939685 -5660245 + (CA)n Simple_repeat Simple_repeat 2 64 0 2955 87 42 14 chrX 156939685 156940061 -5659869 - MLT2A1 LTR ERVL -81 363 6 2154 76 0 50 chrX 156940779 156941080 -5658850 + AluSx SINE Alu 1 286 -26 204 40 0 0 chrX 156941080 156941105 -5658825 + (TA)n Simple_repeat Simple_repeat 1 25 0 214 281 104 31 chrX 156941313 156941409 -5658521 + L3 LINE CR1 572 674 -903 282 337 36 72 chrX 156941819 156942012 -5657918 - L2 LINE L2 0 3272 3087 1103 250 124 26 chrX 156942679 156943059 -5656871 + L1M4 LINE L1 18 434 -6425 183 204 0 0 chrX 156943082 156943126 -5656804 + GA-rich Low_complexity Low_complexity 2 45 0 2124 225 32 35 chrX 156943126 156943661 -5656269 + L1M4 LINE L1 3988 4522 -2435 2446 35 42 3 chrX 156943661 156943950 -5655980 + AluY SINE Alu 1 300 -11 2124 225 32 35 chrX 156943950 156944062 -5655868 + L1M4 LINE L1 4522 4633 -2324 276 30 0 0 chrX 156944080 156944113 -5655817 + (TG)n Simple_repeat Simple_repeat 2 34 0 820 185 23 93 chrX 156944207 156944423 -5655507 + MER58A DNA MER1_type 13 213 -11 2183 75 65 3 chrX 156944423 156944716 -5655214 + AluY SINE Alu 1 311 0 322 356 37 7 chrX 156944734 156944869 -5655061 - MIR SINE MIR -121 141 3 22 0 0 0 chrX 156945144 156945166 -5654764 + AT_rich Low_complexity Low_complexity 1 22 0 3336 82 62 2 chrX 156945241 156945680 -5654250 - MER4C LTR ERV1 0 465 1 2404 156 2 19 chrX 156945686 156946096 -5653834 - MER4C-int LTR ERV1 -1 6597 6195 829 283 64 5 chrX 156946129 156946348 -5653582 - L1MDb LINE L1 -5968 441 210 21 0 0 0 chrX 156946382 156946403 -5653527 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chrX 156946980 156947003 -5652927 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 640 135 8 8 chrX 156947003 156947129 -5652801 + CT-rich Low_complexity Low_complexity 1 126 0 1763 158 26 0 chrX 156947129 156947401 -5652529 - AluJo SINE Alu -33 279 1 762 245 5 30 chrX 156949046 156949246 -5650684 - L1PA13 LINE L1 -5260 1527 1333 * 2797 282 23 17 chrX 156949237 156950056 -5649874 - L1PA13 LINE L1 -5963 824 1 439 254 30 68 chrX 156950073 156950337 -5649593 - HAL1 LINE L1 -1424 1083 830 2600 135 7 7 chrX 156950343 156950882 -5649048 - L1M1 LINE L1 -666 5638 5101 380 302 78 31 chrX 156951071 156951263 -5648667 + MIR3 SINE MIR 3 203 -5 236 330 11 11 chrX 156952614 156952702 -5647228 - MIR SINE MIR -63 145 58 2283 99 3 13 chrX 156952949 156953262 -5646668 - AluSx SINE Alu -2 310 1 319 333 0 0 chrX 156953272 156953374 -5646556 - L1P LINE L1 -1141 5005 4904 1382 157 19 12 chrX 156954387 156954642 -5645288 - L1MB7 LINE L1 -1 6167 5915 3739 176 23 11 chrX 156954646 156955355 -5644575 - L1MB2 LINE L1 -1 6170 5454 420 208 39 0 chrX 156956532 156956609 -5643321 + MER96 DNA MER1_type? 1 80 -95 2531 11 0 21 chrX 156957328 156957613 -5642317 + L1PA2 LINE L1 5877 6155 0 9360 89 6 5 chrX 156957640 156958932 -5640998 - MER61C-int LTR ERV1 -2965 2252 959 2642 113 14 21 chrX 156958932 156959355 -5640575 - MER61C-int LTR ERV1 -4377 840 421 568 106 0 89 chrX 156959374 156959497 -5640433 - MER61C-int LTR ERV1 -4763 454 343 823 249 23 41 chrX 156959497 156959718 -5640212 - MER61C-int LTR ERV1 -5000 217 1 2103 179 21 8 chrX 156959724 156960110 -5639820 - MER61C LTR ERV1 -30 404 14 221 196 0 0 chrX 156960888 156960934 -5638996 - L2 LINE L2 0 3313 3268 390 307 55 63 chrX 156960946 156961200 -5638730 + L2 LINE L2 2805 3056 -216 2424 188 12 5 chrX 156961598 156962024 -5637906 - L1MDa LINE L1 -6109 431 3 858 114 57 104 chrX 156962023 156962216 -5637714 - L1MA9 LINE L1 0 6312 6129 * 1432 221 65 97 chrX 156962216 156962786 -5637144 - L1M4 LINE L1 -1818 4328 3777 4740 185 52 23 chrX 156962803 156963173 -5636757 - L1MB3 LINE L1 0 6577 6219 1558 182 3 46 chrX 156963173 156963480 -5636450 - AluJo SINE Alu -18 294 1 4740 185 52 23 chrX 156963480 156964449 -5635481 - L1MB3 LINE L1 -358 6219 5188 2252 107 0 3 chrX 156964449 156964748 -5635182 - AluSx SINE Alu -14 298 1 4740 185 52 23 chrX 156964748 156965119 -5634811 - L1MB3 LINE L1 -1389 5188 4829 1324 185 30 7 chrX 156965119 156965387 -5634543 - MER61C LTR ERV1 -158 276 14 1251 107 0 11 chrX 156965391 156965568 -5634362 + AluSg/x SINE Alu 120 294 -16 885 219 32 68 chrX 156965601 156965801 -5634129 - L1MB3 LINE L1 -3707 2833 2650 1604 196 7 3 chrX 156965801 156966087 -5633843 + AluJo SINE Alu 1 287 -25 885 219 32 68 chrX 156966087 156966242 -5633688 - L1MB3 LINE L1 -3890 2650 2491 282 250 71 12 chrX 156966405 156966489 -5633441 + MIR3 SINE MIR 110 198 -10 2166 107 10 10 chrX 156966612 156966910 -5633020 - AluSx SINE Alu -14 298 1 18475 126 12 33 chrX 156967117 156971155 -5628775 + L1P3 LINE L1 8 4008 -2453 2151 82 0 0 chrX 156971155 156971424 -5628506 + L1PA8 LINE L1 5891 6172 0 3307 123 171 106 chrX 156971696 156973055 -5626875 - pTR5 LTR ERV1 0 2606 1524 935 158 64 54 chrX 156974370 156974573 -5625357 + AluJo SINE Alu 75 279 -33 2475 60 6 22 chrX 156975247 156975563 -5624367 - AluY SINE Alu 0 311 1 239 343 82 14 chrX 156975797 156975943 -5623987 - L2 LINE L2 -5 3267 3112 1091 119 42 158 chrX 156976303 156976492 -5623438 - MER46A DNA MER2_type -2495 236 82 1962 85 89 0 chrX 156976492 156976802 -5623128 + AluSp SINE Alu 3 335 0 1091 119 42 158 chrX 156976802 156976871 -5623059 - MER46A DNA MER2_type -2649 82 7 357 296 155 43 chrX 156976892 156977169 -5622761 - L2 LINE L2 -782 2532 2225 1903 147 0 11 chrX 156977418 156977727 -5622203 - AluJb SINE Alu 0 309 4 389 175 165 10 chrX 156978626 156978729 -5621201 - MIR SINE MIR -90 118 31 272 281 31 0 chrX 156980027 156980123 -5619807 + L1ME4a LINE L1 5961 6059 -62 22 0 0 0 chrX 156981916 156981938 -5617992 + AT_rich Low_complexity Low_complexity 1 22 0 213 205 0 0 chrX 156981970 156982009 -5617921 + (CAA)n Simple_repeat Simple_repeat 3 41 0 1658 140 82 161 chrX 156982515 156982795 -5617135 - MSTA LTR MaLR 0 428 198 212 57 0 29 chrX 156982795 156982830 -5617100 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 1658 140 82 161 chrX 156982830 156983014 -5616916 - MSTA LTR MaLR -230 198 1 217 355 25 16 chrX 156983313 156983434 -5616496 - L2 LINE L2 -219 3053 2932 237 235 123 0 chrX 156984022 156984103 -5615827 - L2 LINE L2 -46 3226 3136 866 126 0 49 chrX 156984514 156984657 -5615273 - FLAM_C SINE Alu -7 136 1 960 156 0 101 chrX 156985354 156985553 -5614377 - AluJb SINE Alu -13 299 121 1710 113 16 39 chrX 156985560 156985817 -5614113 - AluSx SINE Alu -3 309 59 446 287 0 8 chrX 156985920 156986049 -5613881 - MIR SINE MIR -129 133 6 1914 133 3 63 chrX 156986493 156986824 -5613106 - AluSx SINE Alu -1 311 1 607 240 64 60 chrX 156987652 156987885 -5612045 + MIR SINE MIR 23 256 -6 213 94 0 0 chrX 156987910 156987942 -5611988 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 208 317 39 9 chrX 156988165 156988345 -5611585 - MIR SINE MIR 0 262 23 190 309 18 0 chrX 156988659 156988714 -5611216 + L2 LINE L2 3206 3261 -11 258 250 71 12 chrX 156989527 156989611 -5610319 - MIR3 SINE MIR -10 198 110 855 219 32 68 chrX 156989774 156989929 -5610001 + L1MDa LINE L1 2491 2650 -3890 1572 203 7 3 chrX 156989929 156990215 -5609715 - AluJo SINE Alu -25 287 1 855 219 32 68 chrX 156990215 156990415 -5609515 + L1MDa LINE L1 2650 2833 -3707 1259 107 0 11 chrX 156990448 156990625 -5609305 - AluSg/x SINE Alu -16 296 122 1341 185 30 7 chrX 156990629 156990897 -5609033 + MER61C LTR ERV1 14 276 -158 1527 213 25 14 chrX 156990897 156991258 -5608672 + L1 LINE L1 4435 4799 -1347 2409 68 0 7 chrX 156991268 156991577 -5608353 + AluY SINE Alu 1 307 -4 977 99 0 0 chrX 156992136 156992267 -5607663 + AluSg/x SINE Alu 179 309 -1 945 287 44 7 chrX 156992379 156992729 -5607201 - L2 LINE L2 -287 3026 2670 8408 51 14 3 chrX 156992729 156994481 -5605449 - L1PA3 LINE L1 -140 6015 4246 209 345 9 27 chrX 156996070 156996180 -5603750 - MIR SINE MIR -84 124 17 232 218 36 18 chrX 156996189 156996244 -5603686 + MER5A DNA MER1_type 47 102 -87 223 156 22 0 chrX 156996397 156996442 -5603488 - L2 LINE L2 -3 3310 3265 221 304 0 0 chrX 156997261 156997353 -5602577 + (CTG)n Simple_repeat Simple_repeat 1 92 0 219 235 0 0 chrX 156997356 156997454 -5602476 + CT-rich Low_complexity Low_complexity 3 100 0 289 243 0 0 chrX 156997475 156997549 -5602381 + (CTG)n Simple_repeat Simple_repeat 3 76 0 789 175 21 26 chrX 156998307 156998500 -5601430 + L1P LINE L1 3964 4155 -1991 7369 42 7 0 chrX 156998500 157000116 -5599814 + L1PA4 LINE L1 4533 6155 0 789 175 21 26 chrX 157000116 157000132 -5599798 + L1P LINE L1 4155 4170 -1976 26 74 0 0 chrX 157000573 157000627 -5599303 + AT_rich Low_complexity Low_complexity 1 54 0 70 56 0 0 chrX 157000692 157000799 -5599131 + AT_rich Low_complexity Low_complexity 1 107 0 216 0 0 0 chrX 157001904 157001928 -5598002 + (CTG)n Simple_repeat Simple_repeat 2 25 0 509 242 32 42 chrX 157002590 157002780 -5597150 + MIR SINE MIR 18 193 -41 398 292 7 28 chrX 157002790 157002934 -5596996 + L2 LINE L2 3173 3313 0 1215 104 0 0 chrX 157003422 157003576 -5596354 - AluSq SINE Alu -159 154 1 2516 218 41 17 chrX 157003652 157003779 -5596151 - L1ME1 LINE L1 -50 6116 5990 989 283 88 43 chrX 157003779 157004235 -5595695 - L1MB1 LINE L1 -169 5999 5565 230 0 33 0 chrX 157004235 157004265 -5595665 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1852 122 48 0 chrX 157004269 157004539 -5595391 - AluSq SINE Alu -30 283 1 989 283 88 43 chrX 157004539 157004870 -5595060 - L1MB1 LINE L1 -605 5563 2728 422 256 86 37 chrX 157004957 157005226 -5594704 - L1MEd LINE L1 -4914 1205 924 21 0 0 0 chrX 157005323 157005344 -5594586 + AT_rich Low_complexity Low_complexity 1 21 0 7273 60 6 100 chrX 157005347 157006444 -5593486 - SVA Other Other -17 1369 377 773 232 51 28 chrX 157006856 157007110 -5592820 - L1ME1 LINE L1 -985 5161 4902 358 324 43 36 chrX 157007118 157007371 -5592559 + L2 LINE L2 2720 2974 -340 378 197 0 0 chrX 157009735 157009801 -5590129 + AluJ/FRAM SINE Alu 230 295 -7 2167 94 7 11 chrX 157009803 157010089 -5589841 + AluSq SINE Alu 1 285 -28 23 54 0 0 chrX 157010089 157010126 -5589804 + AT_rich Low_complexity Low_complexity 1 37 0 1958 170 0 0 chrX 157010186 157010498 -5589432 + AluJb SINE Alu 1 312 0 2388 97 0 0 chrX 157010740 157011039 -5588891 + AluSq SINE Alu 1 299 -14 409 281 16 8 chrX 157013572 157013693 -5586237 - MLT1A2 LTR MaLR -88 302 181 180 111 0 0 chrX 157013693 157013720 -5586210 + (CGTG)n Simple_repeat Simple_repeat 3 29 0 846 194 6 28 chrX 157013734 157013914 -5586016 - MLT1A2 LTR MaLR -195 179 4 1844 191 18 18 chrX 157014494 157014881 -5585049 - MLT1B LTR MaLR -3 387 1 4966 180 29 11 chrX 157015085 157016597 -5583333 - L1MA7 LINE L1 -1 6290 4755 186 71 0 0 chrX 157217489 157217517 -5382413 + (A)n Simple_repeat Simple_repeat 1 28 0 529 259 48 11 chrX 157221698 157221887 -5378043 + Tigger5 DNA MER2_type 2056 2251 -72 495 265 0 27 chrX 157224899 157225084 -5374846 + (CA)n Simple_repeat Simple_repeat 1 180 0 201 195 0 0 chrX 157225331 157225372 -5374558 + (CA)n Simple_repeat Simple_repeat 2 42 0 39 0 0 0 chrX 157226305 157226344 -5373586 + AT_rich Low_complexity Low_complexity 1 39 0 306 0 0 0 chrX 157226823 157226857 -5373073 + (T)n Simple_repeat Simple_repeat 1 34 0 1185 170 14 14 chrX 157229595 157229807 -5370123 + MLT1A1 LTR MaLR 154 365 0 791 196 62 11 chrX 157229807 157229930 -5370000 + L1MC3 LINE L1 6078 6214 -1571 243 0 0 0 chrX 157229930 157229957 -5369973 + (CA)n Simple_repeat Simple_repeat 1 27 0 791 196 62 11 chrX 157229957 157230012 -5369918 + L1MC3 LINE L1 6214 6265 -1520 401 318 15 27 chrX 157230116 157230377 -5369553 + L1MC5 LINE L1 7660 7917 -44 513 332 69 50 chrX 157230387 157230791 -5369139 + L1M4 LINE L1 3349 3760 -2386 226 274 29 10 chrX 157230857 157230959 -5368971 + L1M4 LINE L1 3852 3955 -2191 361 314 115 66 chrX 157231006 157231554 -5368376 + L1M4 LINE L1 4015 4589 -1557 247 268 8 63 chrX 157232693 157232820 -5367110 + C-rich Low_complexity Low_complexity 4 123 0 233 184 0 44 chrX 157233262 157233376 -5366554 + C-rich Low_complexity Low_complexity 4 112 0 197 273 104 13 chrX 157236916 157236993 -5362937 - L2 LINE L2 -2 3270 3187 2752 3 0 6 chrX 157237463 157237774 -5362156 - AluYa5 SINE Alu -2 309 1 183 361 82 25 chrX 157238198 157238356 -5361574 - MIR SINE MIR 0 262 96 215 314 35 58 chrX 157238385 157238471 -5361459 - MIR SINE MIR -109 99 16 477 233 138 56 chrX 157239751 157240100 -5359830 + MLT1I LTR MaLR 39 449 -1 24 0 0 0 chrX 157240121 157240145 -5359785 + AT_rich Low_complexity Low_complexity 1 24 0 232 283 42 24 chrX 157240376 157240423 -5359507 - L1MC/D LINE L1 -1923 5885 5840 428 0 19 0 chrX 157240423 157240475 -5359455 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 232 283 42 24 chrX 157240475 157240593 -5359337 - L1MC/D LINE L1 -1968 5840 5717 321 286 67 50 chrX 157242490 157242773 -5357157 - L1ME LINE L1 -296 5825 5538 2448 136 3 16 chrX 157243133 157243502 -5356428 + THE1B LTR MaLR 1 364 0 310 325 0 0 chrX 157245007 157245121 -5354809 + L1ME1 LINE L1 5999 6112 -54 1419 262 27 16 chrX 157245122 157245671 -5354259 + L1ME LINE L1 2558 3112 -3034 1800 129 21 4 chrX 157246485 157246765 -5353165 - MLT2C2 LTR ERVL -179 285 1 800 227 35 5 chrX 157246881 157247079 -5352851 - MLT1B LTR MaLR 0 390 187 375 78 0 0 chrX 157247081 157247132 -5352798 + (GA)n Simple_repeat Simple_repeat 2 52 0 543 206 84 24 chrX 157247159 157247337 -5352593 - MLT1B LTR MaLR -203 187 3 1698 223 73 19 chrX 157247337 157248044 -5351886 + L1ME LINE L1 4791 5527 -757 231 299 15 0 chrX 157248985 157249052 -5350878 + L2 LINE L2 3187 3254 -18 209 148 0 19 chrX 157252559 157252613 -5347317 + (TGGGGG)n Simple_repeat Simple_repeat 2 54 0 346 278 0 48 chrX 157253058 157253184 -5346746 + G-rich Low_complexity Low_complexity 4 123 0 991 310 116 59 chrX 157254312 157255472 -5344458 - L1M4 LINE L1 -1557 4589 3364 359 278 61 47 chrX 157255492 157255852 -5344078 - L1MC5 LINE L1 -44 7917 7553 3411 212 51 62 chrX 157255859 157256048 -5343882 - L1MC3 LINE L1 -763 5383 5194 1953 176 19 16 chrX 157256048 157256412 -5343518 - MLT1A1 LTR MaLR 0 365 1 3411 212 51 62 chrX 157256412 157257719 -5342211 - L1MC3 LINE L1 -952 5194 4791 873 237 68 45 chrX 157257719 157258155 -5341775 + MLT1B LTR MaLR 3 390 0 1676 141 37 0 chrX 157258273 157258543 -5341387 + MLT2C2 LTR ERVL 6 285 -179 1498 259 29 18 chrX 157259356 157259905 -5340025 - L1MC3 LINE L1 -3034 3112 2558 351 267 22 44 chrX 157259906 157260041 -5339889 - L1ME2 LINE L1 -55 6109 5978 2448 136 3 16 chrX 157261529 157261898 -5338032 - THE1B LTR MaLR 0 364 1 321 286 67 50 chrX 157262258 157262541 -5337389 + L1ME LINE L1 5538 5825 -296 578 287 94 69 chrX 157264261 157264556 -5335374 + L1ME4a LINE L1 5539 5852 -269 428 0 19 0 chrX 157264556 157264608 -5335322 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 578 287 94 69 chrX 157264608 157264803 -5335127 + L1ME4a LINE L1 5852 6041 -80 24 0 0 0 chrX 157264886 157264910 -5335020 + AT_rich Low_complexity Low_complexity 1 24 0 501 232 138 56 chrX 157264931 157265280 -5334650 - MLT1I LTR MaLR -1 449 39 215 314 35 58 chrX 157266560 157266646 -5333284 + MIR SINE MIR 16 99 -109 183 361 82 25 chrX 157266675 157266833 -5333097 + MIR SINE MIR 96 262 0 2770 3 0 6 chrX 157267257 157267570 -5332360 + AluYa5 SINE Alu 1 311 0 197 273 104 13 chrX 157268047 157268124 -5331806 + L2 LINE L2 3187 3270 -2 233 184 0 44 chrX 157271664 157271778 -5328152 + G-rich Low_complexity Low_complexity 4 112 0 247 268 8 63 chrX 157272220 157272347 -5327583 + G-rich Low_complexity Low_complexity 4 123 0 361 314 115 66 chrX 157273486 157274034 -5325896 - L1M4 LINE L1 -1557 4589 4015 226 274 29 10 chrX 157274081 157274183 -5325747 - L1M4 LINE L1 -2191 3955 3852 513 332 69 50 chrX 157274249 157274653 -5325277 - L1M4 LINE L1 -2386 3760 3349 401 318 15 27 chrX 157274663 157274924 -5325006 - L1MC5 LINE L1 -44 7917 7660 3701 212 75 24 chrX 157275028 157275083 -5324847 - L1MC3 LINE L1 -744 5402 5351 243 0 0 0 chrX 157275083 157275110 -5324820 + (TG)n Simple_repeat Simple_repeat 1 27 0 3701 212 75 24 chrX 157275110 157275233 -5324697 - L1MC3 LINE L1 -795 5351 5236 1949 181 19 19 chrX 157275233 157275598 -5324332 - MLT1A1 LTR MaLR 0 365 1 3701 212 75 24 chrX 157275598 157275872 -5324058 - L1MC3 LINE L1 -910 5236 5696 369 0 0 0 chrX 157275872 157275913 -5324017 + (TA)n Simple_repeat Simple_repeat 2 42 0 3701 212 75 24 chrX 157275913 157276888 -5323042 - L1MC3 LINE L1 -449 5697 4773 1271 179 45 98 chrX 157276888 157277075 -5322855 + MLT1B LTR MaLR 15 171 -219 642 26 0 0 chrX 157277075 157277151 -5322779 + (TC)n Simple_repeat Simple_repeat 2 77 0 1271 179 45 98 chrX 157277151 157277360 -5322570 + MLT1B LTR MaLR 171 390 0 337 248 62 26 chrX 157277360 157277473 -5322457 - L1M4 LINE L1 -1067 5079 4963 1798 129 21 4 chrX 157277475 157277755 -5322175 + MLT2C2 LTR ERVL 1 285 -179 1415 267 26 15 chrX 157278577 157279116 -5320814 - L1M4 LINE L1 -3044 3102 2558 382 298 0 0 chrX 157279117 157279231 -5320699 - L1ME1 LINE L1 -54 6112 5999 294 289 70 47 chrX 157280863 157281119 -5318811 + L1ME LINE L1 5539 5800 -321 225 0 0 0 chrX 157281148 157281173 -5318757 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chrX 157281462 157281485 -5318445 + AT_rich Low_complexity Low_complexity 1 23 0 419 232 143 95 chrX 157281509 157281861 -5318069 - MLT1J2 LTR MaLR -2 448 39 249 279 59 140 chrX 157283145 157283417 -5316513 + MIR SINE MIR 13 262 0 196 313 15 0 chrX 157284308 157284375 -5315555 + L2 LINE L2 3187 3254 -18 297 165 0 33 chrX 157287540 157287631 -5312299 + G-rich Low_complexity Low_complexity 4 91 0 285 264 8 62 chrX 157288084 157288213 -5311717 + G-rich Low_complexity Low_complexity 4 125 0 1109 314 106 57 chrX 157289150 157290331 -5309599 - L1MC3 LINE L1 -1557 4589 3351 454 289 50 36 chrX 157290347 157290627 -5309303 - L1MC5 LINE L1 -48 7913 7630 3668 216 56 38 chrX 157290709 157290900 -5309030 - L1MC3 LINE L1 -751 5395 5209 1980 179 19 16 chrX 157290900 157291264 -5308666 - MLT1A1 LTR MaLR 0 365 1 3668 216 56 38 chrX 157291264 157292545 -5307385 - L1MC3 LINE L1 -937 5209 4773 1315 190 38 84 chrX 157292545 157292732 -5307198 + MLT1B LTR MaLR 15 176 -214 198 0 0 0 chrX 157292732 157292754 -5307176 + (TC)n Simple_repeat Simple_repeat 2 23 0 1315 190 38 84 chrX 157292754 157292960 -5306970 + MLT1B LTR MaLR 176 390 0 256 150 33 17 chrX 157293017 157293077 -5306853 - L1M4 LINE L1 -1123 5023 4963 1853 141 17 0 chrX 157293079 157293408 -5306522 + MLT2C2 LTR ERVL 1 333 -64 246 136 0 0 chrX 157293446 157293490 -5306440 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 472 225 79 75 chrX 157293502 157293742 -5306188 - L1M4 LINE L1 -1182 4964 4724 2224 108 24 38 chrX 157293754 157294123 -5305807 - THE1B LTR MaLR 0 364 1 807 88 0 0 chrX 157294123 157294237 -5305693 - THE1B-int LTR MaLR 0 1580 1467 1479 130 8 8 chrX 157294237 157294476 -5305454 + HSMAR2 DNA Mariner 1061 1299 -3 523 276 150 60 chrX 157294849 157295262 -5304668 - MLT1J2 LTR MaLR 0 450 1 1629 187 24 66 chrX 157295914 157296293 -5303637 + MLT1A2 LTR MaLR 1 363 -11 1618 189 12 84 chrX 157296898 157297142 -5302788 - MLT1A2 LTR MaLR 0 374 169 2566 143 26 5 chrX 157297142 157297561 -5302369 + MSTA LTR MaLR 1 428 0 1618 189 12 84 chrX 157297561 157297719 -5302211 - MLT1A2 LTR MaLR -205 169 1 1766 128 8 4 chrX 157297872 157298138 -5301792 - MLT1B LTR MaLR 0 390 124 458 333 62 5 chrX 157298151 157298343 -5301587 + MIR SINE MIR 57 259 -3 325 209 110 0 chrX 157299233 157299324 -5300606 + L2 LINE L2 3170 3270 -2 3942 71 40 36 chrX 157299478 157299574 -5300356 - MER41B LTR ERV1 -81 554 460 2175 97 3 0 chrX 157299574 157299882 -5300048 - AluY SINE Alu -2 309 1 3942 71 40 36 chrX 157299882 157300337 -5299593 - MER41B LTR ERV1 -175 460 1 5242 106 21 7 chrX 157300337 157301084 -5298846 - MER41B-int LTR ERV1 -2 5944 5187 813 141 0 15 chrX 157301091 157301226 -5298704 - FLAM_C SINE Alu 0 133 1 1022 72 0 14 chrX 157301258 157301396 -5298534 + AluSq SINE Alu 1 136 -177 216 0 0 0 chrX 157301409 157301433 -5298497 + (CA)n Simple_repeat Simple_repeat 2 25 0 289 256 0 0 chrX 157301433 157301515 -5298415 - L1MC4 LINE L1 -1347 6695 6614 1141 97 0 0 chrX 157301523 157301754 -5298176 + AluSq SINE Alu 130 360 0 4341 73 0 0 chrX 157301754 157302298 -5297632 - MER41B-int LTR ERV1 -764 5182 4639 572 138 11 0 chrX 157302293 157302380 -5297550 - MER41B-int LTR ERV1 -5858 88 1 * 991 126 26 0 chrX 157302380 157302531 -5297399 - MER41B LTR ERV1 0 635 481 365 188 12 0 chrX 157307099 157307179 -5292751 + G-rich Low_complexity Low_complexity 3 83 0 216 97 0 0 chrX 157307661 157307692 -5292238 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 356 261 20 20 chrX 157308355 157308508 -5291422 + (TA)n Simple_repeat Simple_repeat 2 154 0 261 293 111 60 chrX 157309050 157309763 -5290167 - L1M4 LINE L1 -1565 4581 3833 4162 148 49 0 chrX 157309782 157310409 -5289521 + L1M1 LINE L1 16 673 -6892 1144 83 0 0 chrX 157310410 157310566 -5289364 + AluY SINE Alu 155 310 -1 390 258 7 5 chrX 157310629 157310730 -5289200 - L1MC3 LINE L1 -1375 6410 6333 * 2431 198 82 24 chrX 157310723 157310988 -5288942 - L1MC3 LINE L1 -743 5403 5155 185 65 32 0 chrX 157310988 157311019 -5288911 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2431 198 82 24 chrX 157311019 157311831 -5288099 - L1MC3 LINE L1 -991 5155 4743 2305 213 12 21 chrX 157311838 157312351 -5287579 + L1MC3 LINE L1 7249 7756 -29 881 261 112 66 chrX 157312389 157312998 -5286932 + L1MC/D LINE L1 3998 4669 -1477 3218 85 14 0 chrX 157312998 157313420 -5286510 + MSTA LTR MaLR 1 428 0 881 261 112 66 chrX 157313420 157313779 -5286151 + L1MC/D LINE L1 4669 5010 -1136 538 264 21 0 chrX 157314642 157314786 -5285144 - L1M4 LINE L1 -951 5195 5049 1294 266 56 17 chrX 157315350 157315760 -5284170 - L1MCb LINE L1 -5604 441 16 10396 194 53 26 chrX 157315761 157317865 -5282065 - L1MDa LINE L1 -4170 2370 199 2289 84 0 0 chrX 157317865 157318149 -5281781 + AluSg SINE Alu 27 310 0 10396 194 53 26 chrX 157318149 157318335 -5281595 - L1MDa LINE L1 -6341 199 19 335 226 87 9 chrX 157318342 157318457 -5281473 + MER97c DNA MER1_type? 71 194 -896 2382 137 52 36 chrX 157318495 157318672 -5281258 - MER65A LTR ERV1 0 445 272 1890 167 3 3 chrX 157318672 157318977 -5280953 + AluSx SINE Alu 1 305 -7 2382 137 52 36 chrX 157318977 157319237 -5280693 - MER65A LTR ERV1 -173 272 1 548 237 22 0 chrX 157319975 157320110 -5279820 + L1MC/D LINE L1 5540 5677 -682 1630 175 16 0 chrX 157320170 157320479 -5279451 - L1MC/D LINE L1 -690 5669 5356 868 191 31 70 chrX 157320474 157320731 -5279199 - L1MC/D LINE L1 -1989 4157 3911 * 2957 232 124 23 chrX 157320753 157320792 -5279138 - L1MC/D LINE L1 -2759 3387 3353 1977 120 20 10 chrX 157320792 157321092 -5278838 - AluSx SINE Alu -9 303 1 2957 232 124 23 chrX 157321092 157321404 -5278526 - L1MC/D LINE L1 -2793 3353 3074 2897 84 15 0 chrX 157321404 157321808 -5278122 - L1PA13 LINE L1 0 6163 5754 2957 232 124 23 chrX 157321808 157322570 -5277360 - L1MC/D LINE L1 -3072 3074 2161 693 349 4 25 chrX 157322570 157322848 -5277082 + LTR16A LTR ERVL 139 410 -40 1935 220 66 23 chrX 157322866 157323424 -5276506 + L1ME2 LINE L1 5582 6163 -1 244 193 46 64 chrX 157323683 157323836 -5276094 + L1 LINE L1 5221 5370 -776 769 204 0 7 chrX 157323847 157323989 -5275941 - FLAM_C SINE Alu -1 142 2 371 197 0 0 chrX 157324006 157324082 -5275848 - L1MB8 LINE L1 -1 6177 6102 246 62 0 0 chrX 157324136 157324168 -5275762 + (TC)n Simple_repeat Simple_repeat 2 33 0 297 0 0 0 chrX 157324168 157324201 -5275729 + (CA)n Simple_repeat Simple_repeat 1 33 0 406 248 51 8 chrX 157324202 157324319 -5275611 + L2 LINE L2 3191 3312 -1 246 328 106 5 chrX 157324312 157324510 -5275420 - L2 LINE L2 -729 2585 2368 * 200 352 109 8 chrX 157324542 157324670 -5275260 + MIR3 SINE MIR 16 156 -52 2328 89 0 0 chrX 157325204 157325486 -5274444 + AluSp SINE Alu 1 282 -31 387 0 0 0 chrX 157325489 157325532 -5274398 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 257 374 0 0 chrX 157325537 157325660 -5274270 + L2 LINE L2 2736 2858 -456 5017 166 36 18 chrX 157326227 157327238 -5272692 - L1MB3 LINE L1 -3 6180 5140 1850 153 6 31 chrX 157327238 157327558 -5272372 + AluJo SINE Alu 1 312 0 5017 166 36 18 chrX 157327558 157327812 -5272118 - L1MB3 LINE L1 -1043 5140 4892 1676 215 29 25 chrX 157327971 157328418 -5271512 + Charlie4a DNA MER1_type 28 476 -32 992 208 0 11 chrX 157329287 157329465 -5270465 + MER45A DNA AcHobo 2 177 -1 2238 171 8 0 chrX 157329819 157330206 -5269724 + MLT1B LTR MaLR 1 390 0 274 336 57 8 chrX 157330251 157330373 -5269557 - MIR SINE MIR -122 140 13 323 263 21 21 chrX 157330965 157331060 -5268870 - L1ME2 LINE L1 -9 6155 6061 981 150 0 46 chrX 157331105 157331278 -5268652 + FRAM SINE Alu 1 162 -14 396 297 139 28 chrX 157332235 157332659 -5267271 + L2 LINE L2 1646 2116 -1198 1253 281 32 34 chrX 157332778 157333215 -5266715 + MLT1J2 LTR MaLR 15 450 0 430 303 8 8 chrX 157333364 157333483 -5266447 - L2 LINE L2 0 3272 3154 3555 174 28 8 chrX 157333687 157334400 -5265530 - L1MB4 LINE L1 0 6180 5454 465 234 104 30 chrX 157334662 157334863 -5265067 + L1M4 LINE L1 4878 5093 -1053 1145 136 15 15 chrX 157334873 157335071 -5264859 - L1PB1 LINE L1 -3 6148 5951 286 144 40 0 chrX 157335565 157335627 -5264303 - MLT2B1 LTR ERVL 0 554 452 261 200 15 0 chrX 157335634 157335699 -5264231 + (TA)n Simple_repeat Simple_repeat 2 67 0 1988 191 28 85 chrX 157335699 157336207 -5263723 - MLT2B1 LTR ERVL -41 479 1 619 217 364 3 chrX 157336467 157336808 -5263122 + L2 LINE L2 2850 3313 0 540 0 0 0 chrX 157337382 157337442 -5262488 + (CA)n Simple_repeat Simple_repeat 1 60 0 413 265 11 99 chrX 157337797 157337978 -5261952 - MIR SINE MIR -67 195 31 985 176 4 127 chrX 157338494 157338761 -5261169 - MLT1B LTR MaLR 0 390 157 230 224 15 45 chrX 157338762 157338896 -5261034 + (TA)n Simple_repeat Simple_repeat 2 131 0 712 236 6 12 chrX 157338900 157339065 -5260865 - MLT1B LTR MaLR -226 164 1 255 347 8 8 chrX 157340005 157340126 -5259804 - MIR SINE MIR -122 140 20 201 288 14 27 chrX 157340174 157340247 -5259683 - L2 LINE L2 -656 2658 2587 561 88 55 0 chrX 157343697 157343788 -5256142 + L1MA8 LINE L1 6192 6287 -4 2335 94 17 28 chrX 157343829 157344181 -5255749 - L1PA10 LINE L1 0 6168 5821 220 267 107 15 chrX 157344533 157344664 -5255266 - MIR SINE MIR -100 162 20 180 265 0 0 chrX 157344696 157344745 -5255185 - MER5A DNA MER1_type -23 166 118 511 217 139 0 chrX 157344825 157344991 -5254939 - MER53 DNA DNA 0 189 1 795 151 16 0 chrX 157346271 157346397 -5253533 - FLAM_C SINE Alu -4 129 2 580 261 60 30 chrX 157350268 157350700 -5249230 + L2 LINE L2 2756 3283 -30 372 233 47 39 chrX 157350998 157351127 -5248803 + MIR SINE MIR 80 209 -53 2514 146 21 19 chrX 157351160 157351593 -5248337 + Tigger2a DNA MER2_type 1 434 0 242 328 61 0 chrX 157352456 157352587 -5247343 - L2 LINE L2 -210 3062 2924 39999 75 8 7 chrX 157353573 157359714 -5240216 - L1PA6 LINE L1 0 6154 11 786 196 12 6 chrX 157360059 157360232 -5239698 - L1MB3 LINE L1 -10 6173 6000 3094 152 5 48 chrX 157360236 157360764 -5239166 - L1MB3 LINE L1 -275 5908 5407 2355 99 0 10 chrX 157360764 157361077 -5238853 - AluSx SINE Alu -2 310 1 3094 152 5 48 chrX 157361077 157361147 -5238783 - L1MB3 LINE L1 -776 5407 5336 1095 190 75 22 chrX 157361599 157361911 -5238019 - MLT1C LTR MaLR -5 462 135 448 261 121 13 chrX 157362430 157362587 -5237343 - MIR SINE MIR -56 206 33 216 345 0 0 chrX 157363062 157363120 -5236810 - L2 LINE L2 -25 3288 3231 243 317 40 20 chrX 157364070 157364171 -5235759 - MIR SINE MIR -113 149 47 352 120 0 0 chrX 157364365 157364415 -5235515 + AluSq SINE Alu 134 183 -120 512 220 107 13 chrX 157364837 157364987 -5234943 - MLT1H LTR MaLR 0 549 386 2180 99 0 11 chrX 157365293 157365609 -5234321 + AluSx SINE Alu 1 313 0 2418 95 0 3 chrX 157366134 157366439 -5233491 - AluSx SINE Alu -8 304 1 198 0 0 0 chrX 157368128 157368150 -5231780 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 455 250 8 31 chrX 157368873 157369001 -5230929 - MER58A DNA MER1_type 0 156 32 441 361 12 20 chrX 157369024 157369049 -5230881 - L1ME LINE L1 -541 5625 5601 1667 181 49 3 chrX 157369049 157369375 -5230555 - L1MB7 LINE L1 -16 6168 5828 441 361 12 20 chrX 157369375 157369690 -5230240 - L1ME LINE L1 -565 5601 5288 1349 274 183 27 chrX 157369811 157370438 -5229492 + L2 LINE L2 374 1098 -2216 1450 207 48 18 chrX 157370534 157370868 -5229062 - MLT2C1 LTR ERVL -53 344 1 2035 249 225 31 chrX 157371084 157371404 -5228526 + L2 LINE L2 1887 2144 -1169 291 93 0 0 chrX 157371404 157371447 -5228483 + (TG)n Simple_repeat Simple_repeat 1 43 0 2035 249 225 31 chrX 157371447 157372207 -5227723 + L2 LINE L2 2144 3187 -126 340 208 28 28 chrX 157372261 157372333 -5227597 + L2 LINE L2 3179 3250 -63 587 264 170 9 chrX 157372439 157372651 -5227279 - L2 LINE L2 -2093 1221 976 2008 116 29 0 chrX 157372668 157372985 -5226945 - AluSx SINE Alu 0 325 1 661 207 0 18 chrX 157373013 157373124 -5226806 + FLAM_A SINE Alu 2 110 -32 215 31 31 0 chrX 157373165 157373197 -5226733 + (GA)n Simple_repeat Simple_repeat 2 34 0 2342 85 0 29 chrX 157373272 157373579 -5226351 - AluSx SINE Alu -14 298 1 429 287 72 16 chrX 157373618 157373988 -5225942 - L1MEd LINE L1 -988 1502 1022 1197 180 151 52 chrX 157374002 157374447 -5225483 - L1MC5 LINE L1 -131 7830 7342 758 181 23 18 chrX 157374457 157374694 -5225236 + MER33 DNA MER1_type 3 317 -7 3337 220 99 39 chrX 157374748 157375051 -5224879 + L1MC4 LINE L1 6740 7023 -1019 2005 113 48 3 chrX 157375051 157375342 -5224588 + AluSx SINE Alu 1 304 -8 3337 220 99 39 chrX 157375342 157376181 -5223749 + L1MC4 LINE L1 7023 7951 -91 715 227 14 37 chrX 157376359 157376575 -5223355 - L1MC4 LINE L1 -1036 7006 6796 3636 165 3 3 chrX 157377477 157378089 -5221841 - L1MB3 LINE L1 -3 6180 5569 1777 180 10 3 chrX 157378711 157379016 -5220914 + AluJo SINE Alu 3 309 -3 1106 304 111 23 chrX 157379357 157380287 -5219643 - L1MB3 LINE L1 -1033 5113 4102 2289 100 0 10 chrX 157381155 157381455 -5218475 + AluSq SINE Alu 1 297 -16 407 245 170 64 chrX 157381470 157381658 -5218272 - MIR SINE MIR -24 238 31 2521 70 3 0 chrX 157382184 157382484 -5217446 - AluSg SINE Alu -9 301 1 250 280 50 20 chrX 157383243 157383343 -5216587 - MIR SINE MIR -37 225 123 320 263 118 84 chrX 157383350 157383647 -5216283 - L3 LINE CR1 -191 1386 1080 244 317 172 11 chrX 157383699 157383879 -5216051 - L3 LINE CR1 -625 952 744 1679 208 70 0 chrX 157384344 157384685 -5215245 - MLT1A1 LTR MaLR 0 365 1 1596 236 62 5 chrX 157384706 157385143 -5214787 - MLT1C LTR MaLR 0 467 6 209 344 21 0 chrX 157385368 157385461 -5214469 + CT-rich Low_complexity Low_complexity 4 98 0 2266 80 27 3 chrX 157386409 157386708 -5213222 - AluSx SINE Alu -6 306 1 676 184 72 33 chrX 157388048 157388200 -5211730 - FAM SINE Alu -27 158 1 408 198 23 0 chrX 157388712 157388798 -5211132 + MER104 DNA Tc2 68 155 -25 426 225 99 28 chrX 157389614 157389756 -5210174 + MER5A DNA MER1_type 12 163 -26 546 109 0 0 chrX 157390777 157390878 -5209052 + (TG)n Simple_repeat Simple_repeat 1 101 0 828 122 0 0 chrX 157390890 157391054 -5208876 + (TG)n Simple_repeat Simple_repeat 2 165 0 204 267 0 0 chrX 157391386 157391431 -5208499 - L3 LINE CR1 -177 1400 1356 250 239 71 44 chrX 157391883 157391996 -5207934 - MIR3 SINE MIR -86 122 7 1001 222 5 19 chrX 157392613 157392829 -5207101 + MER58A DNA MER1_type 1 213 -11 486 182 36 0 chrX 157392906 157393019 -5206911 + L1M3 LINE L1 5370 5491 -680 2114 107 0 4 chrX 157393019 157393289 -5206641 + AluSx SINE Alu 1 269 -43 210 381 48 9 chrX 157393952 157394057 -5205873 - L2 LINE L2 -23 3249 3141 2139 198 21 31 chrX 157394662 157395142 -5204788 - MLT1D LTR MaLR 0 505 31 1679 211 99 7 chrX 157396688 157397114 -5202816 + MLT1C LTR MaLR 3 467 0 210 91 0 0 chrX 157397544 157397577 -5202353 + (TG)n Simple_repeat Simple_repeat 2 34 0 1346 237 85 27 chrX 157398335 157398531 -5201399 - L1ME3A LINE L1 0 6170 5987 2299 119 0 3 chrX 157398531 157398842 -5201088 + AluSx SINE Alu 1 310 -2 1346 237 85 27 chrX 157398842 157399250 -5200680 - L1ME3A LINE L1 -183 5987 5469 1828 146 3 29 chrX 157399275 157399583 -5200347 - AluJo SINE Alu -12 300 1 1069 290 20 12 chrX 157399600 157400000 -5199930 - L1ME3A LINE L1 -872 5274 4872 1225 226 11 49 chrX 157400087 157400455 -5199475 + MLT2C1 LTR ERVL 44 397 0 275 279 27 45 chrX 157401076 157401187 -5198743 + MIR SINE MIR 31 139 -123 244 250 0 33 chrX 157401775 157401835 -5198095 + MIR SINE MIR 205 262 0 845 238 141 0 chrX 157401929 157402135 -5197795 + MIR SINE MIR 17 251 -11 220 404 53 0 chrX 157404470 157404584 -5195346 - L2 LINE L2 -16 3256 3137 239 306 31 20 chrX 157405941 157406039 -5193891 - L1M2 LINE L1 -591 5721 5623 * 322 277 9 9 chrX 157406037 157406149 -5193781 + L1ME LINE L1 5415 5526 -636 279 198 0 13 chrX 157406165 157406232 -5193698 + L1ME LINE L1 5584 5647 -515 2032 137 3 3 chrX 157406237 157406559 -5193371 + MER47A DNA MER2_type 2 323 -43 1614 242 83 26 chrX 157406596 157407091 -5192839 - L2 LINE L2 -1340 1974 1452 307 279 87 71 chrX 157407119 157407302 -5192628 - L1ME LINE L1 -430 5691 5506 394 289 164 25 chrX 157407382 157407814 -5192116 - L1ME LINE L1 -752 5394 4903 329 273 207 15 chrX 157408014 157408212 -5191718 - L2 LINE L2 -162 3110 2875 180 340 32 21 chrX 157408270 157408364 -5191566 - L2 LINE L2 -825 2489 2395 1485 274 155 50 chrX 157408368 157409399 -5190531 - L2 LINE L2 -616 2698 1560 448 374 123 16 chrX 157409400 157409830 -5190100 - L2 LINE L2 -2092 1222 747 1050 148 0 0 chrX 157410180 157410214 -5189716 + MER3 DNA MER1_type 14 47 -162 286 270 52 58 chrX 157410214 157410388 -5189542 - MER3 DNA MER1_type 0 209 37 1493 185 67 24 chrX 157411006 157411303 -5188627 + AluJb SINE Alu 1 310 -2 419 303 7 14 chrX 157412854 157412996 -5186934 + MIR3 SINE MIR 43 183 -25 942 124 0 0 chrX 157413085 157413214 -5186716 - FLAM_C SINE Alu -10 133 5 225 372 79 12 chrX 157413782 157413946 -5185984 - L2 LINE L2 -203 3069 2895 189 0 0 0 chrX 157414073 157414094 -5185836 + (CAGGG)n Simple_repeat Simple_repeat 3 23 0 688 322 127 27 chrX 157414801 157415422 -5184508 - L2 LINE L2 -46 3226 2538 21 0 0 0 chrX 157416371 157416392 -5183538 + GC_rich Low_complexity Low_complexity 1 21 0 201 39 0 0 chrX 157416398 157416424 -5183506 + (CCCGG)n Simple_repeat Simple_repeat 5 30 0 258 83 0 104 chrX 157416865 157416913 -5183017 - MIR3 SINE MIR -54 154 112 221 324 34 87 chrX 157417832 157418039 -5181891 - L2 LINE L2 -44 3228 3033 468 311 28 34 chrX 157419039 157419216 -5180714 + MIR SINE MIR 6 181 -81 1114 158 0 0 chrX 157419504 157419675 -5180255 - FAM SINE Alu 0 175 5 380 229 48 0 chrX 157419711 157419816 -5180114 - L1MC4 LINE L1 0 8042 7933 225 231 138 0 chrX 157419862 157419927 -5180003 - MIR SINE MIR -99 163 90 234 0 0 0 chrX 157420753 157420779 -5179151 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 248 301 14 3 chrX 157420955 157421043 -5178887 + MIR SINE MIR 68 147 -61 2397 83 3 3 chrX 157421369 157421681 -5178249 + AluSx SINE Alu 1 312 0 221 284 25 49 chrX 157423246 157423327 -5176603 - MIR3 SINE MIR -115 93 15 2283 115 0 0 chrX 157428165 157428470 -5171460 - AluSx SINE Alu -7 305 1 404 331 58 49 chrX 157428616 157429027 -5170903 - L1ME4a LINE L1 -123 5998 5584 201 321 48 89 chrX 157429335 157429606 -5170324 - L2 LINE L2 -161 3111 2852 1226 35 40 15 chrX 157429888 157430299 -5169631 + (CATCC)n Simple_repeat Simple_repeat 1 421 0 247 268 80 27 chrX 157430934 157431046 -5168884 - MIR3 SINE MIR -22 186 69 537 250 21 65 chrX 157432087 157432293 -5167637 - MIR SINE MIR -63 199 3 193 232 160 32 chrX 157433652 157433777 -5166153 + MIR3 SINE MIR 30 170 -38 356 331 30 30 chrX 157434256 157434389 -5165541 - L2 LINE L2 -23 3290 3158 198 0 0 0 chrX 157437288 157437310 -5162620 + (GGA)n Simple_repeat Simple_repeat 2 23 0 613 315 36 19 chrX 157438164 157438408 -5161522 + MIR SINE MIR 11 256 -6 261 321 52 22 chrX 157438680 157438814 -5161116 + MIR3 SINE MIR 69 206 -2 205 266 13 76 chrX 157439354 157439433 -5160497 - L2 LINE L2 -210 3062 2989 202 239 138 15 chrX 157439665 157439795 -5160135 - L2 LINE L2 -311 2961 2816 2124 182 40 5 chrX 157439815 157440261 -5159669 - MLT1C LTR MaLR 0 467 6 232 350 17 50 chrX 157440565 157440685 -5159245 + MIR3 SINE MIR 68 183 -25 2022 151 56 0 chrX 157441818 157442137 -5157793 - MER1B DNA MER1_type 0 337 1 1854 155 8 46 chrX 157442170 157442383 -5157547 - MLT1B LTR MaLR -11 379 186 1943 134 0 20 chrX 157442383 157442681 -5157249 - AluJb SINE Alu -18 294 3 1854 155 8 46 chrX 157442681 157442861 -5157069 - MLT1B LTR MaLR -204 186 1 2167 74 3 14 chrX 157442929 157443244 -5156686 - AluSg SINE Alu 0 312 1 1884 161 0 40 chrX 157443273 157443596 -5156334 + AluJo SINE Alu 1 310 -2 703 279 61 44 chrX 157444376 157444601 -5155329 + MIR SINE MIR 1 226 -36 1194 227 53 10 chrX 157445007 157445307 -5154623 - MLT1C LTR MaLR 0 467 155 272 254 116 58 chrX 157447084 157447222 -5152708 - L2 LINE L2 0 3272 3127 209 389 31 36 chrX 157447613 157447806 -5152124 - L2 LINE L2 -77 3195 3004 222 318 230 12 chrX 157447825 157448077 -5151853 + L2 LINE L2 2458 2764 -550 484 240 0 0 chrX 157448304 157448408 -5151522 - MIR SINE MIR -97 165 62 274 271 128 44 chrX 157448960 157449163 -5150767 - L2 LINE L2 -1216 2098 1879 553 298 88 22 chrX 157449182 157449401 -5150529 + MIR SINE MIR 31 259 -3 240 111 0 0 chrX 157449401 157449437 -5150493 + Alu SINE Alu 2 37 -263 1464 175 72 17 chrX 157449528 157449820 -5150110 - AluJb SINE Alu -4 308 1 230 250 181 0 chrX 157450157 157450229 -5149701 + L2 LINE L2 3187 3271 -1 197 346 79 16 chrX 157451430 157451557 -5148373 + L2 LINE L2 3137 3271 -1 566 337 12 0 chrX 157452363 157452532 -5147398 + L2 LINE L2 2689 2859 -455 2079 116 11 69 chrX 157452782 157453076 -5146854 + MER2 DNA MER2_type 2 312 -32 216 0 0 0 chrX 157453076 157453100 -5146830 + (TCTCC)n Simple_repeat Simple_repeat 5 28 0 1876 154 0 0 chrX 157453100 157453386 -5146544 - AluJb SINE Alu -26 286 1 2079 116 11 69 chrX 157453386 157453452 -5146478 + MER2 DNA MER2_type 310 342 -2 2434 64 0 3 chrX 157453487 157453798 -5146132 - AluY SINE Alu -1 310 1 726 275 0 30 chrX 157454289 157454489 -5145441 - MIR SINE MIR -21 241 48 3661 111 31 70 chrX 157455417 157456055 -5143875 - LTR18B LTR ERVL -1 613 1 186 261 144 36 chrX 157456505 157456616 -5143314 - MIR SINE MIR -134 128 6 219 349 108 15 chrX 157456652 157456847 -5143083 - L2 LINE L2 -2 3270 3058 287 291 282 19 chrX 157457071 157457415 -5142515 - L2 LINE L2 -180 3133 2696 308 206 123 0 chrX 157457644 157457717 -5142213 - MIR SINE MIR -128 134 53 2318 124 0 0 chrX 157458039 157458345 -5141585 - AluSx SINE Alu 0 312 1 455 267 27 75 chrX 157458365 157458422 -5141508 - MER5B DNA MER1_type 0 178 120 4973 124 55 47 chrX 157458422 157458682 -5141248 - MER4D LTR ERV1 0 903 647 225 0 0 0 chrX 157458682 157458707 -5141223 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 4973 124 55 47 chrX 157458707 157459342 -5140588 - MER4D LTR ERV1 -256 647 1 455 267 27 75 chrX 157459342 157459471 -5140459 - MER5B DNA MER1_type -58 120 1 678 217 96 0 chrX 157459530 157459687 -5140243 + MER20 DNA MER1_type 48 219 0 943 243 33 0 chrX 157460551 157460761 -5139169 + MIR SINE MIR 2 218 -44 715 176 8 32 chrX 157461083 157461208 -5138722 + FLAM_C SINE Alu 1 122 -21 264 106 0 45 chrX 157461211 157461277 -5138653 + (TA)n Simple_repeat Simple_repeat 2 64 0 1640 180 32 7 chrX 157461278 157461556 -5138374 - AluSx SINE Alu -25 287 3 1826 135 47 30 chrX 157462979 157463275 -5136655 + AluJb SINE Alu 1 301 -11 249 307 0 30 chrX 157464094 157464195 -5135735 + GA-rich Low_complexity Low_complexity 2 99 0 538 330 156 26 chrX 157465128 157465361 -5134569 - L2 LINE L2 -527 2787 2586 1941 169 0 6 chrX 157465361 157465674 -5134256 + AluJo SINE Alu 1 311 -1 538 330 156 26 chrX 157465674 157465985 -5133945 - L2 LINE L2 -728 2586 2172 1938 169 9 6 chrX 157466675 157467023 -5132907 + MER68 LTR ERV1 214 562 0 506 305 90 31 chrX 157467036 157467393 -5132537 - L2 LINE L2 -508 2806 2429 327 329 45 47 chrX 157468116 157468538 -5131392 - MER61-int LTR ERV1 -2091 2556 2136 2033 232 108 78 chrX 157468756 157469348 -5130582 - MER61-int LTR ERV1 -1905 3031 2458 903 154 18 47 chrX 157469348 157469517 -5130413 - FRAM SINE Alu -2 164 1 2033 232 108 78 chrX 157469517 157470793 -5129137 - MER61-int LTR ERV1 -2478 2458 1108 993 195 14 57 chrX 157470802 157471084 -5128846 - MER61-int LTR ERV1 -4233 703 434 210 37 0 0 chrX 157471172 157471199 -5128731 + (GGA)n Simple_repeat Simple_repeat 1 27 0 1689 169 33 120 chrX 157471649 157471677 -5128253 - MER92A LTR ERV1 0 412 383 2025 137 7 10 chrX 157471677 157471976 -5127954 + AluJo SINE Alu 1 298 -14 1689 169 33 120 chrX 157471976 157471995 -5127935 - MER92A LTR ERV1 -29 383 364 2107 126 7 0 chrX 157471995 157472303 -5127627 - AluSx SINE Alu 0 310 1 1689 169 33 120 chrX 157472303 157472703 -5127227 - MER92A LTR ERV1 -48 364 1 2814 106 23 25 chrX 157473077 157473512 -5126418 - MER57B LTR ERV1 0 434 1 1405 117 122 0 chrX 157473512 157473742 -5126188 - MER57B-int LTR ERV1 0 7537 7280 629 124 31 31 chrX 157473743 157473872 -5126058 - LTR54B LTR ERV1 -367 131 3 2390 88 0 0 chrX 157473884 157474180 -5125750 + AluSc SINE Alu 1 296 -13 2672 133 12 19 chrX 157474181 157474611 -5125319 - MER57B-int LTR ERV1 -393 7144 6718 1636 156 37 44 chrX 157474624 157474719 -5125211 - MER61-int LTR ERV1 -1586 3429 3335 2212 114 0 0 chrX 157474719 157475016 -5124914 + AluSq SINE Alu 1 297 -16 1636 156 37 44 chrX 157475016 157475330 -5124600 - MER61-int LTR ERV1 -1680 3335 3023 1514 114 18 26 chrX 157475336 157475563 -5124367 - AluSg/x SINE Alu -14 296 72 326 208 104 0 chrX 157475572 157475649 -5124281 - MER61-int LTR ERV1 -4384 833 749 226 254 0 30 chrX 157475649 157475716 -5124214 - tRNA-Glu-GAG tRNA tRNA -3 72 8 3686 123 42 22 chrX 157475716 157476307 -5123623 - MER57-int LTR ERV1 -5368 2169 1567 783 156 62 25 chrX 157476312 157476472 -5123458 - MER57-int LTR ERV1 -6874 663 498 187 272 53 44 chrX 157476487 157476601 -5123329 - L2 LINE L2 -1485 1829 1715 1876 92 92 4 chrX 157476736 157477007 -5122923 + AluSx SINE Alu 1 295 -17 270 349 88 51 chrX 157479856 157479964 -5119966 - L2 LINE L2 -22 3250 3147 713 256 99 29 chrX 157479964 157480206 -5119724 - MIR SINE MIR -2 260 2 270 349 88 51 chrX 157480206 157480392 -5119538 - L2 LINE L2 -125 3147 2945 579 188 0 0 chrX 157480552 157480653 -5119277 - FLAM_A SINE Alu -10 132 32 182 194 0 0 chrX 157480974 157481005 -5118925 - L2 LINE L2 -259 3054 3024 328 297 123 13 chrX 157481849 157482004 -5117926 + MIR3 SINE MIR 10 181 -27 2214 164 20 3 chrX 157482533 157482923 -5117007 - MSTB LTR MaLR -2 424 28 188 347 53 0 chrX 157483847 157483922 -5116008 + L2 LINE L2 3194 3272 0 201 268 36 0 chrX 157484081 157484137 -5115793 - MIR3 SINE MIR -19 189 132 1906 122 4 0 chrX 157484235 157484249 -5115681 - AluSx SINE Alu -8 304 292 212 31 62 0 chrX 157484249 157484281 -5115649 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 1906 122 4 0 chrX 157484281 157484529 -5115401 - AluSx SINE Alu -20 292 41 237 300 63 24 chrX 157484750 157484868 -5115062 + MIR SINE MIR 12 138 -70 555 187 158 0 chrX 157484890 157485029 -5114901 - L1MB7 LINE L1 -10 6174 6014 263 295 18 54 chrX 157486133 157486245 -5113685 - MIR3 SINE MIR -97 111 4 274 239 80 71 chrX 157486914 157487027 -5112903 + L1MEd LINE L1 561 674 -5445 395 196 362 0 chrX 157488002 157488165 -5111765 - L2 LINE L2 -339 2975 2754 1138 206 49 45 chrX 157488260 157488547 -5111383 + MER92A LTR ERV1 31 318 -94 242 301 102 10 chrX 157489083 157489217 -5110713 - MIR3 SINE MIR -62 146 7 398 252 137 14 chrX 157490347 157490486 -5109444 - MIR SINE MIR 0 262 107 188 281 88 0 chrX 157490547 157490604 -5109326 - L2 LINE L2 -12 3260 3199 448 328 209 0 chrX 157491982 157492241 -5107689 - L3 LINE CR1 -94 1483 1171 203 320 97 10 chrX 157492321 157492424 -5107506 - L3 LINE CR1 -879 698 587 1384 224 65 58 chrX 157493075 157493312 -5106618 - L1M4 LINE L1 -2891 3255 3021 2004 136 6 25 chrX 157493312 157493628 -5106302 - AluJb SINE Alu -2 310 1 1384 224 65 58 chrX 157493628 157493909 -5106021 - L1M4 LINE L1 -3125 3021 2733 354 244 189 28 chrX 157494303 157494483 -5105447 - L2 LINE L2 0 3313 3105 4540 60 20 16 chrX 157494565 157495583 -5104347 - MER11A LTR ERVK 0 1266 1 1096 52 41 17 chrX 157495600 157495765 -5104165 - MER11A LTR ERVK -1001 265 1 886 179 0 31 chrX 157495780 157495942 -5103988 - FRAM SINE Alu -12 164 8 569 316 80 4 chrX 157496087 157496312 -5103618 - L2 LINE L2 -38 3234 2993 454 236 71 36 chrX 157496321 157496461 -5103469 - L2 LINE L2 0 3313 3169 2219 285 125 14 chrX 157496470 157496636 -5103294 + L2 LINE L2 1812 1958 -1355 1925 102 60 78 chrX 157496636 157497018 -5102912 - THE1C LTR MaLR 0 375 1 2219 285 125 14 chrX 157497018 157498197 -5101733 + L2 LINE L2 1958 3313 0 634 224 24 35 chrX 157498271 157498441 -5101489 - MER3 DNA MER1_type -11 198 31 2807 260 115 31 chrX 157498448 157499580 -5100350 - L2 LINE L2 -345 2969 1743 559 129 0 40 chrX 157499581 157499593 -5100337 - MER92B LTR ERV1 -431 205 194 2274 217 22 85 chrX 157499593 157500184 -5099746 + MLT2B3 LTR ERVL 1 554 0 559 129 0 40 chrX 157500184 157500272 -5099658 - MER92B LTR ERV1 -442 194 109 1853 155 22 74 chrX 157500277 157500683 -5099247 - MLT1B LTR MaLR 0 390 6 579 192 0 0 chrX 157500718 157500822 -5099108 - MER92B LTR ERV1 -532 104 1 5128 80 1 5 chrX 157501296 157501958 -5097972 - PABL_A LTR ERV1 0 660 1 183 222 156 0 chrX 157503558 157503603 -5096327 - L3 LINE CR1 -323 1254 1203 338 277 0 53 chrX 157504956 157505144 -5094786 + (CA)n Simple_repeat Simple_repeat 1 178 0 311 253 0 0 chrX 157505258 157505345 -5094585 + (CA)n Simple_repeat Simple_repeat 1 87 0 576 194 0 0 chrX 157507788 157507922 -5092008 + CT-rich Low_complexity Low_complexity 2 135 0 268 318 0 0 chrX 157511188 157511276 -5088654 + G-rich Low_complexity Low_complexity 1 88 0 305 308 14 0 chrX 157511441 157511649 -5088281 + (CCCCAA)n Simple_repeat Simple_repeat 1 210 0 2383 81 3 0 chrX 157511809 157512107 -5087823 - AluSx SINE Alu -13 299 1 1693 138 43 33 chrX 157513318 157513594 -5086336 + AluSg SINE Alu 1 279 -31 * 2629 50 0 3 chrX 157513593 157513894 -5086036 - AluY SINE Alu -11 300 1 1857 173 33 40 chrX 157514148 157514547 -5085383 - MSTD LTR MaLR 0 396 1 2117 179 102 41 chrX 157514577 157514814 -5085116 + MER92B LTR ERV1 1 222 -414 2326 64 28 0 chrX 157514814 157515096 -5084834 + AluSc SINE Alu 1 290 -19 2117 179 102 41 chrX 157515096 157515439 -5084491 + MER92B LTR ERV1 222 616 -20 2276 146 25 83 chrX 157515458 157515831 -5084099 - L1MA9 LINE L1 -7 6305 5912 2176 110 7 16 chrX 157515831 157516139 -5083791 - AluSg SINE Alu -5 305 1 2276 146 25 83 chrX 157516139 157516169 -5083761 - L1MA9 LINE L1 -400 5912 5882 1728 173 27 10 chrX 157516169 157516464 -5083466 + AluJb SINE Alu 1 300 -12 2276 146 25 83 chrX 157516464 157516615 -5083315 - L1MA9 LINE L1 -430 5882 5782 338 96 70 17 chrX 157516625 157516740 -5083190 + (TA)n Simple_repeat Simple_repeat 2 122 0 317 229 55 45 chrX 157516750 157516887 -5083043 - L1MC4 LINE L1 -1338 6984 1918 * 325 193 9 114 chrX 157516866 157516980 -5082950 - L1MC4 LINE L1 -4362 2064 1963 36 40 0 0 chrX 157516980 157517030 -5082900 + AT_rich Low_complexity Low_complexity 1 50 0 951 186 12 16 chrX 157517030 157517263 -5082667 - L1M4 LINE L1 -378 5789 5577 268 156 0 0 chrX 157517237 157517282 -5082648 + L1 LINE L1 4849 4893 -1253 * 5097 148 10 1 chrX 157517282 157518058 -5081872 + LTR39 LTR ERV1 1 783 0 309 283 45 42 chrX 157518571 157518806 -5081124 + HERVR LTR ERV1 1397 1620 -5056 265 361 30 27 chrX 157519084 157519419 -5080511 + HERVR LTR ERV1 956 1291 -5831 1208 148 177 57 chrX 157520497 157520814 -5079116 + THE1A LTR MaLR 1 355 0 261 183 0 33 chrX 157520944 157521004 -5078926 + HERVR LTR ERV1 2932 2989 -4767 2425 136 69 10 chrX 157521187 157521591 -5078339 - MSTA LTR MaLR 0 428 1 8708 182 19 11 chrX 157521591 157521691 -5078239 - MSTA-int LTR MaLR 0 1651 1553 3393 149 30 76 chrX 157521691 157522415 -5077515 + LTR8 LTR ERV1 1 691 0 8708 182 19 11 chrX 157522415 157523951 -5075979 - MSTA-int LTR MaLR -98 1553 1 2241 140 94 8 chrX 157523951 157524344 -5075586 - MSTA LTR MaLR 0 428 2 421 280 58 36 chrX 157524528 157524773 -5075157 + HERVR LTR ERV1 2693 3008 -4188 834 331 57 49 chrX 157524841 157526019 -5073911 + HERVR LTR ERV1 3038 4692 -3287 2640 133 52 9 chrX 157526019 157526485 -5073445 - LTR19A LTR ERV1 0 486 1 834 331 57 49 chrX 157526485 157526514 -5073416 + HERVR LTR ERV1 4692 4719 -3260 1938 143 0 48 chrX 157526743 157527058 -5072872 - AluJb SINE Alu -12 300 1 827 321 26 20 chrX 157527282 157527740 -5072190 + HERVR LTR ERV1 4697 5157 -1965 1260 108 20 5 chrX 157527840 157528035 -5071895 + MSTA LTR MaLR 1 198 -230 3550 86 2 0 chrX 157528469 157528934 -5070996 - MER41A LTR ERV1 -88 466 1 191 156 22 89 chrX 157528934 157528979 -5070951 + L2 LINE L2 1750 1791 -1523 6800 102 33 18 chrX 157528979 157529709 -5070221 - MER41A-int LTR ERV1 -47 5899 5147 2085 83 10 24 chrX 157529709 157529998 -5069932 - AluSg1 SINE Alu -11 298 14 6800 102 33 18 chrX 157529998 157530298 -5069632 - MER41A-int LTR ERV1 -799 5147 4853 * 8830 106 50 13 chrX 157530297 157532388 -5067542 - MER41A-int LTR ERV1 -1218 4728 2167 780 116 0 8 chrX 157532384 157532505 -5067425 - MER41A-int LTR ERV1 -3929 2017 1898 * 2242 122 57 0 chrX 157532500 157532853 -5067077 - MER41A-int LTR ERV1 -4182 1764 1392 3876 206 89 3 chrX 157532871 157533813 -5066117 + L1PA15 LINE L1 4043 5065 -1081 19924 40 14 0 chrX 157533814 157537003 -5062927 + L1PA5 LINE L1 2949 6148 -6 3330 159 12 7 chrX 157537025 157537597 -5062333 + L1PA15 LINE L1 5591 6165 0 3678 139 9 42 chrX 157537610 157538250 -5061680 + LTR39 LTR ERV1 165 783 0 2354 171 13 0 chrX 157538250 157539009 -5060921 + L1M2 LINE L1 4890 5658 -654 2484 213 18 51 chrX 157539675 157540346 -5059584 + MER31-int LTR ERV1 357 1005 -3931 1251 0 0 0 chrX 157540349 157540484 -5059446 + AluYa5/8 SINE Alu 173 307 -3 1438 134 34 89 chrX 157540486 157540866 -5059064 + MER31-int LTR ERV1 1001 1359 -3577 1230 211 0 0 chrX 157540866 157541075 -5058855 + AluJo SINE Alu 1 209 -103 433 127 25 0 chrX 157541137 157541216 -5058714 + MER31-int LTR ERV1 1366 1446 -3490 625 163 50 45 chrX 157541353 157541555 -5058375 + MER31-int LTR ERV1 1686 1888 -3048 1757 189 0 3 chrX 157541565 157541867 -5058063 + AluJo SINE Alu 1 301 -11 1405 206 32 50 chrX 157541882 157542284 -5057646 + L1M4 LINE L1 4799 5193 -953 1702 170 7 0 chrX 157543461 157543743 -5056187 - AluJb SINE Alu -28 284 1 237 33 0 0 chrX 157544022 157544052 -5055878 + (GA)n Simple_repeat Simple_repeat 1 30 0 574 261 0 0 chrX 157544362 157544492 -5055438 - MLT1H LTR MaLR -363 186 57 2029 84 0 0 chrX 157544515 157544765 -5055165 + AluY SINE Alu 27 276 -35 602 60 0 12 chrX 157544766 157544850 -5055080 + (TC)n Simple_repeat Simple_repeat 2 84 0 375 248 9 15 chrX 157544850 157544956 -5054974 + L1MC4 LINE L1 1998 6983 -1339 297 319 200 0 chrX 157545395 157545530 -5054400 - MIR SINE MIR -77 185 24 1038 138 0 6 chrX 157550606 157550765 -5049165 - FRAM SINE Alu -17 159 2 1354 240 19 17 chrX 157552097 157552456 -5047474 + LTR52 LTR ERVL 62 421 0 838 284 4 34 chrX 157552476 157552744 -5047186 + ERVL LTR ERVL 2299 2558 -2438 536 88 11 55 chrX 157552772 157552809 -5047121 + MSTC LTR MaLR 1 38 -390 3617 102 70 5 chrX 157552809 157553368 -5046562 - LTR61 LTR ERV1 0 595 1 536 88 11 55 chrX 157553368 157553421 -5046509 + MSTC LTR MaLR 38 87 -341 1826 145 16 16 chrX 157553665 157553982 -5045948 + MSTC LTR MaLR 112 428 0 3448 330 52 33 chrX 157553982 157556526 -5043404 + ERVL LTR ERVL 2577 5238 -521 2504 55 6 55 chrX 157556675 157557000 -5042930 - AluY SINE Alu -2 309 1 1026 319 74 10 chrX 157557155 157557560 -5042370 + LTR16B LTR ERVL 34 464 0 1323 147 8 48 chrX 157557743 157558086 -5041844 - LTR55 LTR ERV -5 543 141 2049 127 3 3 chrX 157558086 157558377 -5041553 + AluSx SINE Alu 1 291 -21 1323 147 8 48 chrX 157558377 157558513 -5041417 - LTR55 LTR ERV -407 141 1 203 283 206 0 chrX 157558628 157558720 -5041210 - L2 LINE L2 -2 3270 3160 256 309 14 72 chrX 157558843 157558982 -5040948 - L2 LINE L2 -218 3054 2924 257 295 19 38 chrX 157558985 157559090 -5040840 + L2 LINE L2 770 872 -2442 477 268 71 8 chrX 157559196 157559369 -5040561 - L1MA10 LINE L1 0 6334 5992 * 613 189 24 53 chrX 157559366 157559535 -5040395 - L1M4 LINE L1 -1840 4306 4143 258 325 30 24 chrX 157559827 157559993 -5039937 - L1ME LINE L1 -5901 169 3 544 287 78 19 chrX 157559995 157560253 -5039677 + L2 LINE L2 2502 2774 -540 21 0 0 0 chrX 157560255 157560276 -5039654 + AT_rich Low_complexity Low_complexity 1 21 0 2120 146 28 59 chrX 157560525 157560591 -5039339 - MLT2D LTR ERVL -1 413 347 228 35 0 0 chrX 157560591 157560620 -5039310 + (GA)n Simple_repeat Simple_repeat 2 30 0 2120 146 28 59 chrX 157560620 157560979 -5038951 - MLT2D LTR ERVL -67 347 1 336 346 18 57 chrX 157560988 157561216 -5038714 - HAL1b LINE L1 -14 1334 1116 1894 168 3 0 chrX 157561421 157561712 -5038218 - AluJo SINE Alu -20 292 1 1601 199 85 39 chrX 157562282 157562765 -5037165 + MLT1D LTR MaLR 1 505 0 1813 194 34 56 chrX 157563513 157563961 -5035969 + MER41B LTR ERV1 162 599 -36 347 257 97 56 chrX 157564760 157564904 -5035026 - HAL1 LINE L1 -1310 1197 1048 1018 16 79 0 chrX 157565614 157565741 -5034189 + MER85 DNA T2_type 1 137 -2 2082 145 0 7 chrX 157565946 157566243 -5033687 + AluJb SINE Alu 1 295 -17 6652 113 11 14 chrX 157567290 157568291 -5031639 + THE1C-int LTR MaLR 583 1580 0 1872 140 89 14 chrX 157568291 157568640 -5031290 + THE1C LTR MaLR 1 375 0 871 189 37 26 chrX 157568640 157568830 -5031100 + L1MC1 LINE L1 6122 6313 -20 416 270 82 0 chrX 157569031 157569227 -5030703 + LTR37B LTR ERV1 233 444 -24 27 0 0 0 chrX 157570598 157570625 -5029305 + AT_rich Low_complexity Low_complexity 1 27 0 2527 153 15 25 chrX 157570760 157571230 -5028700 - MLT1C LTR MaLR -2 465 1 719 210 101 27 chrX 157571407 157571626 -5028304 + MLT1F LTR MaLR 302 536 -6 499 299 150 25 chrX 157571637 157572277 -5027653 + L1ME3 LINE L1 5256 5970 -192 214 317 110 0 chrX 157572458 157572540 -5027390 + MER5A DNA MER1_type 43 133 -56 326 236 112 0 chrX 157572974 157573063 -5026867 + MIR3 SINE MIR 64 162 -46 418 279 69 23 chrX 157573208 157573382 -5026548 + MIR SINE MIR 47 227 -35 228 237 17 17 chrX 157573781 157573840 -5026090 + MER81 DNA DNA 36 94 -20 28 29 0 0 chrX 157574318 157574353 -5025577 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 157574486 157574508 -5025422 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrX 157574633 157574655 -5025275 + (CCG)n Simple_repeat Simple_repeat 3 24 0 228 180 40 0 chrX 157574941 157574991 -5024939 + G-rich Low_complexity Low_complexity 1 52 0 434 298 0 6 chrX 157578973 157579216 -5020714 + (TG)n Simple_repeat Simple_repeat 1 241 0 447 274 18 0 chrX 157579228 157579396 -5020534 + (TG)n Simple_repeat Simple_repeat 1 171 0 294 130 0 0 chrX 157579636 157579682 -5020248 + U2 snRNA snRNA 1 46 -142 1611 252 77 9 chrX 157579711 157580434 -5019496 - L1ME LINE L1 -429 5804 5005 1406 144 140 30 chrX 157580434 157580698 -5019232 + AluJo SINE Alu 1 293 -19 1611 252 77 9 chrX 157580698 157580835 -5019095 - L1ME LINE L1 -1228 5005 4879 951 297 100 35 chrX 157580840 157581707 -5018223 - L1MEc LINE L1 -5211 996 159 2861 75 20 15 chrX 157582483 157582885 -5017045 + MLT2A1 LTR ERVL 1 404 -40 350 247 45 45 chrX 157582981 157583070 -5016860 - L1MC4 LINE L1 -1339 6703 6615 274 149 0 0 chrX 157583070 157583117 -5016813 + MLT2A1 LTR ERVL 390 436 -8 300 211 0 0 chrX 157584326 157584402 -5015528 + (TG)n Simple_repeat Simple_repeat 1 76 0 214 319 22 11 chrX 157585253 157585344 -5014586 + (CGGGG)n Simple_repeat Simple_repeat 4 95 0 192 217 0 0 chrX 157585824 157585870 -5014060 - L2 LINE L2 -23 3249 3204 1274 234 11 57 chrX 157585889 157586243 -5013687 + MLT1A1 LTR MaLR 1 338 -27 604 209 9 0 chrX 157586232 157586347 -5013583 + MLT1A1 LTR MaLR 250 365 0 * 513 138 0 0 chrX 157586558 157586652 -5013278 + (GGA)n Simple_repeat Simple_repeat 3 96 0 288 248 44 9 chrX 157590955 157591068 -5008862 + C-rich Low_complexity Low_complexity 2 118 0 28 86 0 0 chrX 157591290 157591360 -5008570 + GC_rich Low_complexity Low_complexity 1 70 0 305 355 55 48 chrX 157592695 157593135 -5006795 - L1ME LINE L1 -375 5789 5347 2144 163 15 48 chrX 157593328 157593788 -5006142 + MER65A LTR ERV1 1 445 0 243 213 12 18 chrX 157594058 157594143 -5005787 + L1ME1 LINE L1 6095 6183 -1 239 370 143 14 chrX 157594502 157594935 -5004995 - L2 LINE L2 -1857 1457 969 2044 148 0 7 chrX 157596084 157596387 -5003543 - AluSx SINE Alu -11 301 1 362 296 15 15 chrX 157599151 157599283 -5000647 - MIR SINE MIR -36 226 95 2443 94 3 0 chrX 157599504 157599813 -5000117 + AluSp SINE Alu 1 310 -3 2879 132 16 53 chrX 157600022 157600515 -4999415 + MER1A DNA MER1_type 55 529 0 293 261 0 0 chrX 157600619 157600684 -4999246 + MER63 DNA MER1_type 698 762 -298 552 284 77 6 chrX 157604052 157604235 -4995695 + HAL1 LINE L1 3 198 -2309 719 244 33 6 chrX 157604263 157604443 -4995487 - LTR16C LTR ERVL -40 451 267 1801 297 134 21 chrX 157604562 157605666 -4994264 + L2 LINE L2 1708 2936 -378 1138 251 28 33 chrX 157605666 157606025 -4993905 + MLT1A2 LTR MaLR 1 357 -17 183 305 112 58 chrX 157606127 157606350 -4993580 + L2 LINE L2 3075 3309 -4 1390 307 78 27 chrX 157606352 157607218 -4992712 + HAL1 LINE L1 1334 2244 -263 512 258 6 16 chrX 157607218 157607400 -4992530 + (TG)n Simple_repeat Simple_repeat 1 180 0 258 251 114 55 chrX 157607429 157607628 -4992302 + HAL1 LINE L1 2276 2491 -16 231 36 0 0 chrX 157607628 157607656 -4992274 + (TG)n Simple_repeat Simple_repeat 2 29 0 258 251 114 55 chrX 157607656 157607675 -4992255 + HAL1 LINE L1 2491 2507 0 327 318 120 21 chrX 157608132 157608998 -4990932 - L1M4 LINE L1 -2919 3227 2276 1162 272 90 40 chrX 157608999 157609477 -4990453 - MLT1F1 LTR MaLR -2 565 64 332 196 111 18 chrX 157609728 157609834 -4990096 + MLT1H LTR MaLR 5 161 -388 718 162 8 0 chrX 157609942 157610059 -4989871 + FLAM_C SINE Alu 9 126 -17 2656 168 16 14 chrX 157611091 157611808 -4988122 + L1MA4 LINE L1 5019 5742 -558 5143 59 5 2 chrX 157611810 157612932 -4986998 + MER11A LTR ERVK 1 1265 -1 2784 166 39 13 chrX 157612932 157613475 -4986455 + L1MA4 LINE L1 5738 6294 -6 1019 160 34 10 chrX 157614477 157614683 -4985247 + L1MC1 LINE L1 6113 6323 -10 272 340 29 0 chrX 157614683 157614786 -4985144 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 188 196 0 20 chrX 157615256 157615307 -4984623 + (CA)n Simple_repeat Simple_repeat 2 51 0 534 269 17 6 chrX 157619397 157619572 -4980358 + L2 LINE L2 674 850 -2464 652 254 39 6 chrX 157619643 157619824 -4980106 - MIR SINE MIR -68 194 8 286 281 203 36 chrX 157619854 157620213 -4979717 + L2 LINE L2 872 1290 -2024 1438 147 4 0 chrX 157622629 157622854 -4977076 + L1PA15 LINE L1 5936 6161 -4 232 310 25 35 chrX 157622921 157623118 -4976812 - L1M4 LINE L1 -1069 5077 4883 466 319 63 33 chrX 157623422 157623964 -4975966 - L1M4 LINE L1 -1551 4595 4038 437 267 97 23 chrX 157623997 157624214 -4975716 - L1M4 LINE L1 -2213 3933 3701 13568 143 48 12 chrX 157624582 157626910 -4973020 - Tigger1 DNA MER2_type 0 2418 6 563 62 12 0 chrX 157626946 157627026 -4972904 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 2106 62 21 103 chrX 157627631 157627971 -4971959 - AluYb8 SINE Alu -6 312 1 1318 207 16 32 chrX 157628038 157628352 -4971578 + AluJb SINE Alu 1 309 -3 355 130 0 0 chrX 157628352 157628406 -4971524 + L1MA3 LINE L1 6252 6305 0 951 269 4 13 chrX 157628465 157628703 -4971227 + MLT1G1 LTR MaLR 1 236 -359 328 313 107 68 chrX 157628986 157629937 -4969993 + L2 LINE L2 1235 2222 -1092 278 293 45 38 chrX 157629943 157630100 -4969830 + MER5A DNA MER1_type 7 164 -25 1884 193 19 9 chrX 157630565 157631049 -4968881 - L1MA4A LINE L1 -743 5403 4947 * 3471 170 136 12 chrX 157631044 157631796 -4968134 + L1MA4A LINE L1 5401 6245 -58 264 125 0 0 chrX 157632268 157632308 -4967622 - MADE1 DNA Mariner -40 40 1 664 211 47 42 chrX 157632979 157633169 -4966761 - L1M2 LINE L1 -596 5695 5505 496 185 99 27 chrX 157633191 157633360 -4966570 + L1MD2 LINE L1 5739 5916 -255 4361 180 3 4 chrX 157633360 157634114 -4965816 - ERVL LTR ERVL -382 5382 4630 297 0 0 0 chrX 157634126 157634159 -4965771 + (TG)n Simple_repeat Simple_repeat 1 33 0 1557 177 26 7 chrX 157634162 157634467 -4965463 + ERVL-B2 LTR ERVL 5443 5753 -11 1711 184 16 75 chrX 157634481 157634525 -4965405 + MLT2B2 LTR ERVL 1 46 -368 1887 135 5 95 chrX 157634525 157634895 -4965035 - MER1B DNA MER1_type 0 337 1 1711 184 16 75 chrX 157634895 157635279 -4964651 + MLT2B2 LTR ERVL 46 414 0 393 136 0 0 chrX 157635733 157635799 -4964131 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 442 288 77 57 chrX 157637547 157637898 -4962032 - MLT1I LTR MaLR -33 376 19 1763 123 12 0 chrX 157637943 157638196 -4961734 + AluSx SINE Alu 44 299 -13 280 297 84 25 chrX 157639396 157639598 -4960332 + MIR SINE MIR 13 226 -36 275 253 13 13 chrX 157644061 157644140 -4955790 + G-rich Low_complexity Low_complexity 5 83 0 515 238 11 39 chrX 157644635 157644816 -4955114 + G-rich Low_complexity Low_complexity 1 176 0 357 62 0 0 chrX 157645264 157645312 -4954618 + (TGGGGG)n Simple_repeat Simple_repeat 4 51 0 264 264 0 45 chrX 157645335 157645445 -4954485 + G-rich Low_complexity Low_complexity 3 107 0 1762 121 72 28 chrX 157646518 157646808 -4953122 + AluSx SINE Alu 3 305 -7 198 0 0 0 chrX 157647543 157647565 -4952365 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 258 32 0 0 chrX 157647564 157647595 -4952335 + (GA)n Simple_repeat Simple_repeat 2 32 0 1981 136 0 0 chrX 157647600 157647873 -4952057 - AluSx SINE Alu -39 273 1 876 270 38 53 chrX 157649004 157649533 -4950397 - L1MC5 LINE L1 -76 7885 7365 * 2974 204 25 58 chrX 157649530 157650017 -4949913 - L1MC3 LINE L1 -938 6847 6394 216 0 0 0 chrX 157650017 157650041 -4949889 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2974 204 25 58 chrX 157650041 157650339 -4949591 - L1MC3 LINE L1 -1391 6394 6088 1815 186 5 38 chrX 157650349 157650720 -4949210 - MLT1A1 LTR MaLR 0 365 7 3143 221 57 18 chrX 157650730 157651797 -4948133 - L1MC3 LINE L1 -748 5398 4978 313 149 11 23 chrX 157651816 157651903 -4948027 + (TTA)n Simple_repeat Simple_repeat 2 87 0 526 185 136 12 chrX 157651909 157652071 -4947859 - L1MC3 LINE L1 -1182 4964 4783 441 294 11 34 chrX 157652075 157652252 -4947678 + MLT1A2 LTR MaLR 13 185 -189 710 233 17 17 chrX 157652282 157652485 -4947445 + MLT1A2 LTR MaLR 187 374 0 239 206 103 31 chrX 157652485 157652582 -4947348 - L1M4 LINE L1 -1067 5079 4976 1526 121 0 9 chrX 157652590 157652822 -4947108 - L1PA8 LINE L1 -4 6168 5939 1675 215 24 3 chrX 157652853 157653193 -4946737 + MLT2C1 LTR ERVL 3 349 -48 1253 253 95 62 chrX 157653256 157653271 -4946659 - L1M4 LINE L1 -1202 4944 4931 1964 146 29 35 chrX 157653271 157653648 -4946282 - THE1C LTR MaLR 0 375 1 9775 124 34 31 chrX 157653648 157655222 -4944708 - THE1C-int LTR MaLR 0 1580 2 1905 138 35 43 chrX 157655223 157655599 -4944331 - THE1C LTR MaLR 0 375 3 1253 253 95 62 chrX 157655599 157655829 -4944101 - L1M4 LINE L1 -1215 4931 4710 349 20 20 20 chrX 157655829 157655880 -4944050 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 7969 12 2 0 chrX 157655880 157657030 -4942900 - L1PA3 LINE L1 -10 6145 4999 1253 253 95 62 chrX 157657030 157657586 -4942344 - L1M4 LINE L1 -1435 4711 4111 7538 88 5 26 chrX 157657947 157659006 -4940924 - MER11C LTR ERVK -35 1036 1 1784 186 22 48 chrX 157660586 157661117 -4938813 + MLT2A2 LTR ERVL 1 413 -40 231 161 11 23 chrX 157661117 157661204 -4938726 + (TA)n Simple_repeat Simple_repeat 2 87 0 315 0 0 0 chrX 157661213 157661248 -4938682 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 106 96 0 chrX 157661248 157661289 -4938641 + MLT2A2 LTR ERVL 397 453 0 417 141 0 0 chrX 157661552 157661623 -4938307 + (TG)n Simple_repeat Simple_repeat 2 72 0 1956 225 23 61 chrX 157663703 157664026 -4935904 - MLT2B3 LTR ERVL -5 549 256 2218 108 3 0 chrX 157664026 157664321 -4935609 + AluSg SINE Alu 1 296 -14 1956 225 23 61 chrX 157664321 157664567 -4935363 - MLT2B3 LTR ERVL -298 256 2 2309 71 7 3 chrX 157665388 157665701 -4934229 + AluY SINE Alu 1 314 0 268 264 146 49 chrX 157665731 157665875 -4934055 - MIR SINE MIR -77 185 28 2218 104 7 0 chrX 157665930 157666415 -4933515 - AluSp SINE Alu 0 487 1 1450 214 6 3 chrX 157666524 157666842 -4933088 - L1MB1 LINE L1 -5 6163 5845 2209 84 61 10 chrX 157668236 157668533 -4931397 - AluSq SINE Alu -1 312 1 387 61 15 15 chrX 157669430 157669447 -4930483 + L1PA4 LINE L1 5838 5854 -301 2215 23 0 4 chrX 157669447 157669708 -4930222 - L1PA4 LINE L1 -3 6152 5893 387 61 15 15 chrX 157669708 157669758 -4930172 + L1PA4 LINE L1 5853 5897 -258 352 300 88 12 chrX 157671468 157671638 -4928292 + L2 LINE L2 668 850 -2464 614 271 42 51 chrX 157671661 157671897 -4928033 - MIR SINE MIR -28 234 1 1715 276 182 31 chrX 157671967 157673209 -4926721 + L2 LINE L2 931 2359 -955 22 56 0 0 chrX 157673842 157673878 -4926052 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chrX 157674460 157674489 -4925441 + AT_rich Low_complexity Low_complexity 1 29 0 286 262 172 50 chrX 157678193 157678601 -4921329 - L1MB1 LINE L1 -407 5763 5299 332 276 93 98 chrX 157678642 157678739 -4921191 - L1MB1 LINE L1 -1027 5119 5023 936 75 45 0 chrX 157678739 157678873 -4921057 - L1PA13 LINE L1 -3 6160 6021 332 276 93 98 chrX 157678873 157679530 -4920400 - L1MB1 LINE L1 -1123 5023 4369 232 171 0 0 chrX 157679570 157679611 -4920319 - Tigger1 DNA MER2_type -1113 1305 1265 13007 154 33 34 chrX 157679857 157682274 -4917656 - Tigger1 DNA MER2_type 0 2418 4 934 97 7 7 chrX 157682301 157682455 -4917475 + (TCTA)n Simple_repeat Simple_repeat 4 157 0 1225 251 7 7 chrX 157683095 157683394 -4916536 + AluJb SINE Alu 1 299 -13 349 61 0 0 chrX 157683394 157683443 -4916487 + L1MA2 LINE L1 6252 6300 -4 22 0 0 0 chrX 157683450 157683472 -4916458 + AT_rich Low_complexity Low_complexity 1 22 0 1488 261 111 22 chrX 157683508 157684013 -4915917 + MLT1G1 LTR MaLR 1 550 -45 570 312 100 45 chrX 157684309 157685069 -4914861 + L2 LINE L2 1415 2216 -1098 279 290 30 59 chrX 157685087 157685256 -4914674 + MER5A DNA MER1_type 7 170 -19 1720 198 22 19 chrX 157685711 157686121 -4913809 - L1M1 LINE L1 -743 5403 5022 2328 64 0 0 chrX 157686121 157686474 -4913456 - AluY SINE Alu 0 353 1 1720 198 22 19 chrX 157686474 157686551 -4913379 - L1M1 LINE L1 -1124 5022 4947 * 3692 189 77 26 chrX 157686538 157686957 -4912973 + L1MA4A LINE L1 5393 5789 -516 207 69 0 0 chrX 157686957 157686986 -4912944 + (TG)n Simple_repeat Simple_repeat 1 29 0 3692 189 77 26 chrX 157686986 157687424 -4912506 + L1MA4A LINE L1 5789 6304 -1 338 231 70 39 chrX 157687496 157687652 -4912278 - L1ME4a LINE L1 -6 6115 5955 2761 226 24 57 chrX 157688631 157689440 -4910490 + L1MB5 LINE L1 5385 6166 -8 4153 152 16 7 chrX 157689634 157690412 -4909518 + L1PB3 LINE L1 5173 5957 -197 729 186 0 0 chrX 157690910 157691204 -4908726 + (TG)n Simple_repeat Simple_repeat 1 294 0 427 212 53 24 chrX 157692730 157693021 -4906909 + (TCTA)n Simple_repeat Simple_repeat 1 299 0 278 215 13 0 chrX 157693071 157693150 -4906780 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 459 0 0 0 chrX 157693767 157693818 -4906112 + (TG)n Simple_repeat Simple_repeat 1 51 0 266 73 24 0 chrX 157693818 157693859 -4906071 + (GA)n Simple_repeat Simple_repeat 1 42 0 198 0 0 0 chrX 157694799 157694821 -4905109 + (TC)n Simple_repeat Simple_repeat 1 22 0 302 0 26 0 chrX 157694833 157694871 -4905059 + (GA)n Simple_repeat Simple_repeat 2 40 0 239 321 57 0 chrX 157703816 157703922 -4896008 + MER69 DNA AcHobo 95 206 -2320 287 314 120 21 chrX 157704979 157705170 -4894760 + HERV16 LTR ERVL 500 709 -4287 1568 172 0 18 chrX 157705202 157705481 -4894449 + AluJo SINE Alu 21 294 -18 360 368 87 21 chrX 157705608 157706035 -4893895 + HERV16 LTR ERVL 850 1304 -3692 265 371 19 0 chrX 157706332 157706437 -4893493 + HERV16 LTR ERVL 1688 1794 -3202 3835 257 29 76 chrX 157706715 157707208 -4892722 + L1MB3 LINE L1 3258 3773 -2373 724 217 0 0 chrX 157707208 157707346 -4892584 + FRAM SINE Alu 1 40 0 3835 257 29 76 chrX 157707346 157708509 -4891421 + L1MB3 LINE L1 3773 4893 -1253 687 250 41 49 chrX 157708806 157709050 -4890880 + L2 LINE L2 315 556 -2758 306 241 24 0 chrX 157709056 157709139 -4890791 + MER53 DNA DNA 1 85 -104 25 0 0 0 chrX 157711070 157711095 -4888835 + AT_rich Low_complexity Low_complexity 1 25 0 2647 190 43 40 chrX 157711101 157711226 -4888704 + L1MB3 LINE L1 5573 5696 -487 1713 166 0 0 chrX 157711226 157711542 -4888388 - AluJo SINE Alu 0 316 1 2647 190 43 40 chrX 157711542 157712021 -4887909 + L1MB3 LINE L1 5696 6180 -3 191 347 0 0 chrX 157712841 157712913 -4887017 - L2 LINE L2 0 3272 3201 188 271 70 54 chrX 157713050 157713179 -4886751 - L2 LINE L2 -194 3078 2948 316 295 87 47 chrX 157713276 157713425 -4886505 - MER58 DNA MER1_type -83 258 104 1026 285 67 60 chrX 157713425 157713992 -4885938 - L1MC/D LINE L1 -744 5402 5185 3221 87 9 7 chrX 157713993 157714419 -4885511 - MSTA LTR MaLR -1 427 1 1637 249 134 44 chrX 157714542 157715198 -4884732 - MER50 LTR ERV1 -19 715 1 281 310 8 39 chrX 157715235 157715364 -4884566 - L2 LINE L2 -569 2745 2621 237 262 117 19 chrX 157715649 157715752 -4884178 + L2 LINE L2 3121 3233 -39 207 100 0 0 chrX 157715899 157715929 -4884001 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 1113 248 46 65 chrX 157716718 157717133 -4882797 - MLT1C LTR MaLR -16 451 45 275 59 0 0 chrX 157717435 157717469 -4882461 - MLT1D LTR MaLR -73 432 399 1094 206 76 24 chrX 157717697 157718131 -4881799 + MLT1D LTR MaLR 1 505 0 1307 196 10 37 chrX 157718186 157718482 -4881448 - L1MB5 LINE L1 -8 6166 5879 2614 164 7 11 chrX 157718489 157718941 -4880989 - L1MB3 LINE L1 0 6183 5734 225 305 23 13 chrX 157718989 157719126 -4880804 - L3 LINE CR1 -692 885 683 198 0 0 0 chrX 157719509 157719531 -4880399 + (GA)n Simple_repeat Simple_repeat 1 22 0 2327 97 3 0 chrX 157719663 157719974 -4879956 + AluSp SINE Alu 1 312 -1 238 250 40 40 chrX 157719987 157720063 -4879867 + MER5B DNA MER1_type 102 177 -1 1349 86 4 81 chrX 157720091 157720325 -4879605 + L1M1 LINE L1 5535 5750 -550 505 306 69 43 chrX 157720391 157721057 -4878873 + L1ME4a LINE L1 5310 5992 -129 263 312 32 11 chrX 157721147 157721240 -4878690 - MIR SINE MIR -132 130 36 317 82 20 0 chrX 157721265 157721314 -4878616 + (TC)n Simple_repeat Simple_repeat 1 50 0 288 293 115 11 chrX 157722008 157722199 -4877731 + L2 LINE L2 2326 2536 -778 8780 147 17 30 chrX 157722924 157723806 -4876124 + L1MA5A LINE L1 3644 4537 -1760 2224 141 30 30 chrX 157723806 157724169 -4875761 - THE1B LTR MaLR -1 363 1 8780 147 17 30 chrX 157724169 157724414 -4875516 + L1MA5A LINE L1 4537 4784 -1513 2404 154 11 49 chrX 157724414 157724863 -4875067 + MSTB1 LTR MaLR 1 432 0 8780 147 17 30 chrX 157724863 157726434 -4873496 + L1MA5A LINE L1 4784 6293 -4 356 198 248 0 chrX 157726870 157726971 -4872959 + MER58B DNA MER1_type 216 341 0 330 256 48 40 chrX 157727332 157727457 -4872473 + MIR3 SINE MIR 83 208 0 190 221 52 65 chrX 157727468 157727545 -4872385 - MIR SINE MIR -165 97 22 806 238 54 45 chrX 157727657 157727993 -4871937 + L2 LINE L2 2919 3257 -56 262 233 81 64 chrX 157728572 157728744 -4871186 + L2 LINE L2 1713 1887 -1427 251 390 64 11 chrX 157728750 157729017 -4870913 + L2 LINE L2 2202 2482 -832 * 263 261 169 21 chrX 157729006 157729148 -4870782 + MIR SINE MIR 100 262 0 * 370 352 73 26 chrX 157729146 157729490 -4870440 + L2 LINE L2 2458 2817 -497 321 226 0 0 chrX 157729575 157729637 -4870293 - L2 LINE L2 0 3272 3211 221 244 200 43 chrX 157730212 157730327 -4869603 + L2 LINE L2 3180 3312 -1 343 265 40 15 chrX 157730513 157730647 -4869283 + MIR SINE MIR 39 176 -32 268 325 48 8 chrX 157731199 157731325 -4868605 - MER5A DNA MER1_type -26 163 33 278 125 49 0 chrX 157731828 157731885 -4868045 - MIR SINE MIR -41 167 107 465 357 30 0 chrX 157731992 157732160 -4867770 - MIR SINE MIR -48 214 42 722 270 28 14 chrX 157732811 157733026 -4866904 + Charlie1b DNA MER1_type 3 220 -303 513 196 41 123 chrX 157733026 157733245 -4866685 + Charlie1b DNA MER1_type 322 522 -1 183 42 0 0 chrX 157733309 157733333 -4866597 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1361 234 116 39 chrX 157733622 157734054 -4865876 - MLT1C LTR MaLR 0 467 3 2010 221 64 28 chrX 157734821 157735354 -4864576 - MLT1E2 LTR MaLR -24 602 51 500 330 9 31 chrX 157736530 157736754 -4863176 + MIR SINE MIR 24 242 -20 338 277 0 53 chrX 157740788 157740976 -4858954 + (CA)n Simple_repeat Simple_repeat 1 178 0 311 253 0 0 chrX 157741090 157741177 -4858753 + (CA)n Simple_repeat Simple_repeat 1 87 0 306 87 0 157 chrX 157744605 157744777 -4855153 + (CACCT)n Simple_repeat Simple_repeat 1 145 0 * 368 320 0 6 chrX 157744649 157744827 -4855103 + CT-rich Low_complexity Low_complexity 2 178 0 1468 248 83 25 chrX 157746875 157747553 -4852377 - L1MEc LINE L1 -2366 3714 2998 * 2550 253 87 26 chrX 157747543 157749203 -4850727 - L1MEc LINE L1 -3478 2602 877 11566 178 13 2 chrX 157749204 157752136 -4847794 - L1PA14 LINE L1 0 7599 4627 3996 119 21 14 chrX 157752136 157752705 -4847225 - L1PA14 LINE L1 -7008 573 1 302 149 117 85 chrX 157752705 157752799 -4847131 - L1MEc LINE L1 -5215 855 759 485 299 46 84 chrX 157752948 157753209 -4846721 - L2 LINE L2 0 3272 3022 2147 127 42 36 chrX 157753400 157753761 -4846169 - THE1B LTR MaLR -1 363 1 599 283 62 17 chrX 157753965 157754142 -4845788 + MIR SINE MIR 77 261 -1 303 182 18 0 chrX 157754220 157754275 -4845655 - L2 LINE L2 0 3313 3258 1093 204 74 16 chrX 157754317 157754626 -4845304 + Charlie4a DNA MER1_type 9 335 -173 629 218 45 170 chrX 157754717 157754842 -4845088 - L1ME LINE L1 -5417 653 514 261 0 0 0 chrX 157754842 157754871 -4845059 + (TGG)n Simple_repeat Simple_repeat 3 31 0 629 218 45 170 chrX 157754871 157755168 -4844762 - L1ME LINE L1 -5556 514 284 433 290 72 91 chrX 157755242 157755628 -4844302 - LTR67 LTR ERVL -136 421 43 473 262 123 0 chrX 157755689 157755876 -4844054 + L1M4 LINE L1 3240 3449 -2697 1137 152 86 0 chrX 157755878 157756088 -4843842 - Tigger1 DNA MER2_type 0 2418 2191 425 193 16 127 chrX 157756093 157756242 -4843688 - MLT1A1 LTR MaLR -117 279 86 309 153 181 28 chrX 157756306 157756378 -4843552 - MLT1A1 LTR MaLR -345 83 1 260 191 21 0 chrX 157756378 157756424 -4843506 + MSTB2 LTR MaLR 411 457 0 775 248 80 37 chrX 157756424 157756647 -4843283 + L1ME1 LINE L1 5852 6093 -73 333 0 0 0 chrX 157756647 157756684 -4843246 + (TG)n Simple_repeat Simple_repeat 1 37 0 775 248 80 37 chrX 157756684 157756759 -4843171 + L1ME1 LINE L1 6093 6163 -3 * 5980 109 59 3 chrX 157756749 157757674 -4842256 + L1PA16 LINE L1 5189 6165 -1 239 148 0 74 chrX 157757680 157757734 -4842196 - L1MC4 LINE L1 -1334 6708 6659 225 154 0 0 chrX 157757782 157757821 -4842109 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 2869 189 52 0 chrX 157757833 157758406 -4841524 + L1ME2 LINE L1 5323 5925 -239 301 280 0 0 chrX 157758498 157758573 -4841357 + (TTCG)n Simple_repeat Simple_repeat 2 76 0 236 214 114 29 chrX 157760398 157760468 -4839462 + MER5A DNA MER1_type 35 110 -79 513 0 0 0 chrX 157763281 157763338 -4836592 + (TG)n Simple_repeat Simple_repeat 2 58 0 211 288 68 0 chrX 157763574 157763633 -4836297 + MIR SINE MIR 88 150 -58 397 279 184 44 chrX 157763755 157764012 -4835918 - L2 LINE L2 0 3313 3093 1611 151 20 33 chrX 157764012 157764311 -4835619 + AluJb SINE Alu 1 295 -17 397 279 184 44 chrX 157764311 157764440 -4835490 - L2 LINE L2 -220 3093 2873 4218 257 127 33 chrX 157765662 157767828 -4832102 - L1MEc LINE L1 -3823 2401 35 288 224 0 106 chrX 157770452 157770631 -4829299 + (TTGGGG)n Simple_repeat Simple_repeat 1 160 0 214 250 20 70 chrX 157770765 157770865 -4829065 + (TTGGGG)n Simple_repeat Simple_repeat 2 96 0 399 270 90 27 chrX 157772622 157772830 -4827100 - L1ME LINE L1 -470 5651 5433 189 175 25 0 chrX 157772876 157772916 -4827014 - L3 LINE CR1 -20 1557 1517 29 90 0 0 chrX 157773063 157773141 -4826789 + AT_rich Low_complexity Low_complexity 1 78 0 295 329 0 0 chrX 157773762 157773841 -4826089 + MIR SINE MIR 107 185 -77 243 234 16 16 chrX 157773951 157774015 -4825915 - MIR SINE MIR -126 82 19 464 260 0 0 chrX 157776093 157776197 -4823733 + U13 snRNA snRNA 1 104 0 359 231 83 58 chrX 157777423 157777544 -4822386 + L2 LINE L2 3142 3265 -7 393 248 190 7 chrX 157779174 157779311 -4820619 - L2 LINE L2 -5 3267 3106 2171 118 72 29 chrX 157781091 157781439 -4818491 + THE1B LTR MaLR 1 363 -1 12262 86 2 18 chrX 157781439 157781491 -4818439 + THE1B-int LTR MaLR 2 53 -1527 4559 42 62 32 chrX 157781491 157782083 -4817847 + LTR66 LTR ERVL 1 610 0 12262 86 2 18 chrX 157782083 157782903 -4817027 + THE1B-int LTR MaLR 53 839 -741 1841 136 36 0 chrX 157782903 157783182 -4816748 + AluSx SINE Alu 1 289 -23 12262 86 2 18 chrX 157783182 157783913 -4816017 + THE1B-int LTR MaLR 839 1580 0 2045 129 75 31 chrX 157783913 157784262 -4815668 + THE1B LTR MaLR 1 364 0 310 167 0 0 chrX 157784657 157784717 -4815213 + Alu SINE Alu 243 302 0 24 53 0 0 chrX 157784759 157784797 -4815133 + AT_rich Low_complexity Low_complexity 1 38 0 1735 170 0 20 chrX 157785059 157785359 -4814571 + AluJb SINE Alu 1 294 -18 375 278 38 8 chrX 157785657 157785790 -4814140 - L1MC/D LINE L1 -2007 5801 5665 330 239 65 52 chrX 157785814 157785969 -4813961 - MLT1J1 LTR MaLR -4 442 286 245 230 172 23 chrX 157786002 157786089 -4813841 - MER5C DNA MER1_type 0 324 225 6017 119 21 10 chrX 157786140 157787034 -4812896 + MER49 LTR ERV1 1 904 -19 295 248 37 64 chrX 157787259 157787368 -4812562 - L1MC/D LINE L1 -2164 5644 5539 278 209 35 70 chrX 157787423 157787538 -4812392 - L1MC/D LINE L1 -2385 5423 5313 2463 68 0 0 chrX 157787637 157787947 -4811983 - AluY SINE Alu -1 310 1 492 298 39 76 chrX 157787952 157788259 -4811671 - L1MC/D LINE L1 -940 5206 4911 222 162 257 108 chrX 157788296 157788370 -4811560 + L2 LINE L2 3192 3276 -37 270 81 0 0 chrX 157788384 157788421 -4811509 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 470 286 116 19 chrX 157788441 157788811 -4811119 - L1MC/D LINE L1 -1310 4836 4431 949 306 62 21 chrX 157789101 157789677 -4810253 - L1MC/D LINE L1 -2200 3946 3347 1757 126 0 0 chrX 157789678 157789932 -4809998 - AluSx SINE Alu -17 295 42 29 0 0 0 chrX 157790122 157790151 -4809779 + AT_rich Low_complexity Low_complexity 1 29 0 337 316 105 36 chrX 157790166 157790692 -4809238 - L1MC/D LINE L1 -3313 2833 2272 543 230 156 79 chrX 157790764 157791142 -4808788 + MLT1J LTR MaLR 105 511 0 374 161 12 25 chrX 157791247 157791328 -4808602 - L1MC5 LINE L1 -52 7909 7830 381 43 0 0 chrX 157791344 157791391 -4808539 + (CA)n Simple_repeat Simple_repeat 2 48 0 304 307 36 0 chrX 157791392 157791532 -4808398 - L1MC4a LINE L1 -1875 5933 5789 1119 289 86 21 chrX 157791542 157792391 -4807539 - L1MC4a LINE L1 -767 5379 4755 416 176 23 78 chrX 157792397 157792708 -4807222 + (TTATA)n Simple_repeat Simple_repeat 1 293 0 375 158 35 82 chrX 157792771 157792942 -4806988 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 216 179 21 84 chrX 157792961 157793056 -4806874 + (TTATA)n Simple_repeat Simple_repeat 4 92 0 496 301 46 23 chrX 157793082 157793431 -4806499 - L1MC4a LINE L1 -1444 4702 4346 1968 29 0 21 chrX 157793484 157793757 -4806173 - AluY SINE Alu 0 311 59 1044 161 0 0 chrX 157993757 157993918 -4606012 + AluJb SINE Alu 134 294 -18 1140 267 102 26 chrX 157993923 157994477 -4605453 - L1MC4 LINE L1 -298 7744 7234 1686 185 65 44 chrX 157994477 157994735 -4605195 - MER7A DNA MER2_type -2692 346 80 1715 167 31 0 chrX 157994735 157995023 -4604907 + AluJb SINE Alu 1 297 -15 1686 185 65 44 chrX 157995023 157995104 -4604826 - MER7A DNA MER2_type -2958 80 2 1140 267 102 26 chrX 157995104 157995823 -4604107 - L1MC4 LINE L1 -808 7234 6163 390 308 94 18 chrX 157995972 157996196 -4603734 + L1ME3A LINE L1 4532 4772 -1374 1952 144 3 10 chrX 157996196 157996508 -4603422 + AluJb SINE Alu 1 310 -2 261 250 43 0 chrX 157996517 157996609 -4603321 + L1ME3A LINE L1 4853 4948 -1198 * 590 318 138 12 chrX 157996602 157997030 -4602900 + L1ME3A LINE L1 5470 5951 -219 189 232 21 141 chrX 157997351 157997493 -4602437 - MIR3 SINE MIR -26 182 58 2250 85 0 10 chrX 157998307 157998613 -4601317 - AluSg SINE Alu -7 303 1 309 335 141 5 chrX 158001023 158001229 -4598701 + L2 LINE L2 2323 2556 -758 438 168 46 84 chrX 158001229 158001360 -4598570 + MLT1E2 LTR MaLR 3 128 -498 277 194 16 0 chrX 158001456 158001518 -4598412 + MLT1E2 LTR MaLR 358 420 -206 405 179 24 0 chrX 158001551 158001635 -4598295 - L1MD2 LINE L1 -16 6343 6258 583 153 0 0 chrX 158001650 158001735 -4598195 + AluJ/FLAM SINE Alu 2 86 -226 3507 175 16 44 chrX 158001760 158002457 -4597473 - L1MB7 LINE L1 -54 6130 5459 2274 103 0 0 chrX 158002457 158002757 -4597173 - AluSx SINE Alu -12 300 1 3507 175 16 44 chrX 158002757 158002897 -4597033 - L1MB7 LINE L1 -725 5459 5317 3083 181 23 60 chrX 158004358 158005093 -4594837 - L1MB7 LINE L1 -810 5336 4576 366 23 0 0 chrX 158005093 158005136 -4594794 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 1144 60 0 33 chrX 158005144 158005328 -4594602 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3083 181 23 60 chrX 158005328 158005401 -4594529 - L1MB7 LINE L1 -1577 4569 4549 252 0 0 0 chrX 158006327 158006355 -4593575 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 939 208 142 41 chrX 158006355 158006727 -4593203 + MLT1C LTR MaLR 44 459 -8 395 311 67 31 chrX 158006919 158007144 -4592786 - ERVL LTR ERVL -2961 2803 2571 684 183 209 0 chrX 158007771 158007962 -4591968 - L1MB7 LINE L1 0 6184 5954 2017 94 0 22 chrX 158008171 158008488 -4591442 + AluSx SINE Alu 12 322 0 288 238 0 24 chrX 158009382 158009466 -4590464 + (TG)n Simple_repeat Simple_repeat 1 82 0 192 231 0 0 chrX 158009777 158009829 -4590101 + (CA)n Simple_repeat Simple_repeat 1 52 0 262 314 72 67 chrX 158009945 158010118 -4589812 - L2 LINE L2 -454 2860 2684 1403 239 162 20 chrX 158010118 158010557 -4589373 + MLT1D LTR MaLR 1 501 -4 262 314 72 67 chrX 158010557 158010606 -4589324 - L2 LINE L2 -630 2684 2637 244 191 43 0 chrX 158010918 158010965 -4588965 - L2 LINE L2 -3 3310 3262 271 119 0 0 chrX 158011352 158011394 -4588536 - Alu SINE Alu -261 42 1 2158 108 0 0 chrX 158012126 158012422 -4587508 - AluSx SINE Alu -16 296 1 2308 195 79 2 chrX 158012844 158013310 -4586620 + MLT1D LTR MaLR 1 502 -3 972 137 0 0 chrX 158013569 158013708 -4586222 - FLAM_C SINE Alu -4 139 1 347 323 174 0 chrX 158014055 158014210 -4585720 + MER5A DNA MER1_type 4 185 -4 2208 115 0 10 chrX 158015138 158015452 -4584478 + AluJb SINE Alu 1 311 -1 461 281 242 10 chrX 158016663 158016973 -4582957 - L1MD2 LINE L1 0 6359 5978 233 111 0 0 chrX 158017606 158017642 -4582288 - L2 LINE L2 -348 2966 2931 211 273 39 0 chrX 158017686 158017763 -4582167 - L2 LINE L2 -519 2795 2716 198 279 0 44 chrX 158018360 158018428 -4581502 - MER5B DNA MER1_type -4 174 110 1508 231 74 14 chrX 158019861 158020293 -4579637 - L1MB3 LINE L1 -4 6179 5722 2238 125 0 0 chrX 158020298 158020610 -4579320 - AluSx SINE Alu 0 312 1 315 303 104 101 chrX 158020703 158020993 -4578937 - L1MEd LINE L1 -5665 454 161 2289 242 48 14 chrX 158020993 158021572 -4578358 - MER77 LTR ERV1 -4 601 3 315 303 104 101 chrX 158021572 158021618 -4578312 - L1MEd LINE L1 -5958 161 117 356 287 26 9 chrX 158021758 158021873 -4578057 + MIR3 SINE MIR 4 120 -88 191 245 57 0 chrX 158023288 158023341 -4576589 - MIR SINE MIR -3 259 204 2071 105 0 4 chrX 158023481 158023758 -4576172 + AluSx SINE Alu 1 276 -36 1574 126 75 9 chrX 158023783 158024150 -4575780 + L1M2 LINE L1 5219 5607 -693 1142 199 0 5 chrX 158024150 158024371 -4575559 + AluJo SINE Alu 1 220 -92 302 78 39 52 chrX 158024371 158024448 -4575482 + (CAAGA)n Simple_repeat Simple_repeat 2 77 0 393 149 0 0 chrX 158024594 158024661 -4575269 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 202 143 29 0 chrX 158024664 158024699 -4575231 + T-rich Low_complexity Low_complexity 3 38 0 1511 148 4 25 chrX 158024699 158024943 -4574987 - AluJo SINE Alu -73 239 1 753 295 23 0 chrX 158025331 158025548 -4574382 + MLT1C LTR MaLR 192 413 -54 411 149 21 11 chrX 158025872 158025966 -4573964 + CT-rich Low_complexity Low_complexity 5 99 0 354 45 0 0 chrX 158025967 158026011 -4573919 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 2139 73 18 0 chrX 158026020 158026295 -4573635 - AluSx SINE Alu -32 280 1 2839 180 90 0 chrX 158026660 158027270 -4572660 + L1MB3 LINE L1 5518 6182 -1 562 113 0 0 chrX 158027297 158027377 -4572553 - AluJ/FLAM SINE Alu -227 85 6 207 279 0 0 chrX 158029608 158029651 -4570279 + (CA)n Simple_repeat Simple_repeat 1 43 0 246 219 0 0 chrX 158029983 158030047 -4569883 + CT-rich Low_complexity Low_complexity 2 65 0 274 258 0 0 chrX 158030175 158030241 -4569689 + (TG)n Simple_repeat Simple_repeat 1 66 0 232 129 0 48 chrX 158030620 158030682 -4569248 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 544 309 192 17 chrX 158031209 158031626 -4568304 + L2 LINE L2 1898 2387 -927 299 263 38 0 chrX 158032418 158032498 -4567432 + MER58B DNA MER1_type 233 315 -26 782 152 0 36 chrX 158032637 158032775 -4567155 + FLAM_C SINE Alu 1 133 0 225 286 167 12 chrX 158033366 158033450 -4566480 + L2 LINE L2 3176 3272 0 297 320 127 66 chrX 158033868 158034412 -4565518 + L2 LINE L2 2174 2750 -564 187 235 15 73 chrX 158034832 158034900 -4565030 + L2 LINE L2 2287 2350 -964 202 236 36 0 chrX 158035232 158035287 -4564643 + L2 LINE L2 3185 3241 -72 250 304 22 52 chrX 158038400 158038535 -4561395 + MIR3 SINE MIR 52 182 -26 324 0 0 0 chrX 158039517 158039553 -4560377 + (TG)n Simple_repeat Simple_repeat 2 37 0 183 80 0 0 chrX 158039687 158039712 -4560218 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 238 344 19 25 chrX 158044693 158044853 -4555077 - L2 LINE L2 -1419 1895 1737 461 185 0 11 chrX 158045877 158045969 -4553961 + MLT1A2 LTR MaLR 284 374 0 902 239 156 9 chrX 158046048 158046374 -4553556 + MER77 LTR ERV1 79 452 -153 2116 139 3 0 chrX 158047116 158047426 -4552504 + AluJb SINE Alu 1 311 -1 1541 235 47 14 chrX 158047433 158047795 -4552135 + MLT1A2 LTR MaLR 1 374 0 440 244 25 50 chrX 158047867 158048027 -4551903 - L1M4 LINE L1 -3154 2992 2837 1356 243 39 10 chrX 158048806 158049199 -4550731 + MER74A LTR ERVL 73 558 0 1012 178 71 25 chrX 158051240 158051521 -4548409 + L1MB5 LINE L1 5881 6174 0 1890 234 24 20 chrX 158051648 158052149 -4547781 + L1MB7 LINE L1 5666 6168 -16 290 299 22 80 chrX 158053845 158053982 -4545948 + MIR3 SINE MIR 5 133 -75 925 161 97 0 chrX 158054638 158054824 -4545106 - MER47A DNA MER2_type -130 236 33 640 267 69 28 chrX 158057581 158057869 -4542061 + MLT1C LTR MaLR 119 418 -49 232 330 75 0 chrX 158058257 158058351 -4541579 - MIR SINE MIR -59 203 103 841 177 0 14 chrX 158058789 158058936 -4540994 - L1MB8 LINE L1 -2 6176 6032 1978 215 48 38 chrX 158058950 158059658 -4540272 + L1MB5 LINE L1 5114 5829 -351 1123 182 5 0 chrX 158059659 158059862 -4540068 + AluJo SINE Alu 1 204 -108 1121 208 118 0 chrX 158059880 158060193 -4539737 + L1MB5 LINE L1 5811 6160 -14 223 196 0 39 chrX 158060762 158060813 -4539117 + C-rich Low_complexity Low_complexity 4 52 0 221 203 72 0 chrX 158061322 158061391 -4538539 + (CACCC)n Simple_repeat Simple_repeat 4 77 0 193 211 123 0 chrX 158063760 158063817 -4536113 + L2 LINE L2 3155 3218 -54 196 209 93 0 chrX 158064077 158064120 -4535810 + MIR SINE MIR 90 136 -72 1689 123 0 0 chrX 158064938 158065165 -4534765 - AluSx SINE Alu -85 227 1 221 241 13 51 chrX 158065973 158066052 -4533878 + L2 LINE L2 2986 3061 -211 180 0 0 0 chrX 158073778 158073798 -4526132 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 218 133 0 22 chrX 158075059 158075104 -4524826 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 241 227 41 82 chrX 158075896 158075993 -4523937 - L2 LINE L2 -6 3266 3174 200 376 28 52 chrX 158077146 158077359 -4522571 + L2 LINE L2 2963 3170 -102 254 326 33 0 chrX 158078371 158078463 -4521467 - MIR SINE MIR -59 203 109 484 341 30 26 chrX 158080384 158080850 -4519080 + L1MC2 LINE L1 5547 6014 -330 * 2288 222 27 11 chrX 158080437 158081000 -4518930 + L1MB3 LINE L1 5604 6175 -8 1019 278 31 59 chrX 158081515 158081964 -4517966 + MLT1J LTR MaLR 1 480 -31 358 264 32 56 chrX 158082232 158082357 -4517573 - MIR SINE MIR -139 123 2 192 289 0 0 chrX 158082482 158082527 -4517403 + MIR SINE MIR 99 143 -119 1093 211 18 9 chrX 158086026 158086244 -4513686 + MER58A DNA MER1_type 4 223 -1 273 29 0 0 chrX 158086291 158086325 -4513605 + (CA)n Simple_repeat Simple_repeat 2 35 0 2183 80 7 0 chrX 158086573 158086861 -4513069 + AluSx SINE Alu 19 308 -4 343 302 163 14 chrX 158086863 158087082 -4512848 + L1ME LINE L1 5329 5586 -656 314 298 61 26 chrX 158087140 158087254 -4512676 + L1ME LINE L1 5716 5833 -288 209 292 0 0 chrX 158087257 158087305 -4512625 + L2 LINE L2 3225 3272 0 268 143 0 0 chrX 158088026 158088068 -4511862 + MER3 DNA MER1_type 47 88 -121 260 241 0 81 chrX 158088220 158088307 -4511623 + L2 LINE L2 3200 3279 -34 575 244 0 0 chrX 158088658 158088793 -4511137 + MER3 DNA MER1_type 1 135 -74 191 256 0 47 chrX 158089075 158089153 -4510777 + MIR SINE MIR 45 119 -89 737 242 60 48 chrX 158089784 158090032 -4509898 + MIR SINE MIR 12 262 0 210 273 0 52 chrX 158091258 158091335 -4508595 + MIR SINE MIR 93 165 -97 37 23 0 0 chrX 158092615 158092659 -4507271 + GC_rich Low_complexity Low_complexity 1 44 0 226 121 17 52 chrX 158092913 158092971 -4506959 + GA-rich Low_complexity Low_complexity 2 57 0 191 250 18 36 chrX 158093809 158093865 -4506065 - L2 LINE L2 -33 3280 3226 194 286 0 18 chrX 158093953 158094009 -4505921 - L2 LINE L2 -254 3059 3005 522 316 0 0 chrX 158094111 158094285 -4505645 + (CA)n Simple_repeat Simple_repeat 1 174 0 231 203 0 0 chrX 158094427 158094496 -4505434 + (CA)n Simple_repeat Simple_repeat 1 69 0 187 298 18 0 chrX 158094759 158094816 -4505114 - MIR SINE MIR -96 166 109 217 259 108 36 chrX 158095730 158095869 -4504061 + MIR3 SINE MIR 11 159 -49 528 213 52 0 chrX 158096467 158096603 -4503327 + MLT1D LTR MaLR 4 146 -359 573 203 0 0 chrX 158096650 158096827 -4503103 + (CA)n Simple_repeat Simple_repeat 2 178 0 565 208 3 3 chrX 158096872 158097262 -4502668 + (CA)n Simple_repeat Simple_repeat 1 390 0 378 305 122 6 chrX 158097299 158097540 -4502390 + MLT1D LTR MaLR 208 488 0 461 194 6 0 chrX 158097672 158097837 -4502093 + (TG)n Simple_repeat Simple_repeat 1 166 0 560 181 0 11 chrX 158097883 158098065 -4501865 + (TG)n Simple_repeat Simple_repeat 1 180 0 383 253 7 0 chrX 158098707 158098861 -4501069 + (TG)n Simple_repeat Simple_repeat 2 156 0 1235 169 0 23 chrX 158099158 158099377 -4500553 - AluJb SINE Alu -98 214 1 459 0 0 0 chrX 158101442 158101493 -4498437 + (CA)n Simple_repeat Simple_repeat 2 52 0 188 163 23 0 chrX 158101493 158101536 -4498394 + GA-rich Low_complexity Low_complexity 1 44 0 189 182 0 0 chrX 158107035 158107068 -4492862 + MIR SINE MIR 117 149 -113 186 43 0 0 chrX 158108073 158108096 -4491834 + (GGA)n Simple_repeat Simple_repeat 3 25 0 264 321 60 29 chrX 158108991 158109151 -4490779 - MIR3 SINE MIR -62 146 9 559 225 12 0 chrX 158109310 158109479 -4490451 + (CA)n Simple_repeat Simple_repeat 2 172 0 510 277 0 0 chrX 158109491 158109786 -4490144 + (CA)n Simple_repeat Simple_repeat 1 295 0 301 384 0 0 chrX 158109788 158109874 -4490056 - L1MC4 LINE L1 -1340 6702 6617 316 345 23 0 chrX 158109875 158109962 -4489968 - L1MC4 LINE L1 -1339 6703 6615 305 324 0 0 chrX 158109902 158109973 -4489957 + L1MD3 LINE L1 6602 6672 -1323 * 324 264 50 58 chrX 158111420 158111541 -4488389 - MIR SINE MIR -66 142 23 240 296 12 0 chrX 158115127 158115208 -4484722 + GA-rich Low_complexity Low_complexity 5 86 0 307 269 14 35 chrX 158115556 158115701 -4484229 + G-rich Low_complexity Low_complexity 3 144 0 229 182 0 0 chrX 158115769 158115813 -4484117 + C-rich Low_complexity Low_complexity 1 44 0 982 246 54 29 chrX 158117226 158117539 -4482391 + L1MB8 LINE L1 5858 6178 0 180 125 0 0 chrX 158118201 158118233 -4481697 + (CCCCCT)n Simple_repeat Simple_repeat 2 33 0 183 220 60 20 chrX 158122934 158122984 -4476946 + MIR SINE MIR 96 147 -61 523 252 146 43 chrX 158126221 158126590 -4473340 + MLT1C LTR MaLR 51 457 -10 213 39 0 0 chrX 158128563 158128589 -4471341 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 238 273 0 91 chrX 158133807 158133906 -4466024 + MIR SINE MIR 59 148 -114 195 323 48 0 chrX 158133948 158134010 -4465920 + MIR3 SINE MIR 142 206 -2 365 337 126 27 chrX 158134202 158134682 -4465248 - L2 LINE L2 -249 3064 2516 21 36 0 0 chrX 158135510 158135538 -4464392 + GC_rich Low_complexity Low_complexity 1 28 0 327 25 0 0 chrX 158135793 158135833 -4464097 + (CCCCCG)n Simple_repeat Simple_repeat 5 44 0 294 218 39 0 chrX 158136692 158136770 -4463160 + GA-rich Low_complexity Low_complexity 3 83 0 210 71 0 0 chrX 158136938 158136966 -4462964 + (CA)n Simple_repeat Simple_repeat 2 29 0 341 323 69 36 chrX 158137731 158138034 -4461896 - L3 LINE CR1 -3 1574 1262 236 95 79 16 chrX 158138069 158138132 -4461798 + (TGGG)n Simple_repeat Simple_repeat 1 67 0 183 204 0 0 chrX 158138541 158138585 -4461345 + A-rich Low_complexity Low_complexity 1 44 0 668 289 21 21 chrX 158139174 158139368 -4460562 - MIR SINE MIR -1 261 68 298 274 43 0 chrX 158139647 158139764 -4460166 + C-rich Low_complexity Low_complexity 4 125 0 188 65 0 32 chrX 158140663 158140694 -4459236 + (TCTCCC)n Simple_repeat Simple_repeat 5 34 0 2096 112 3 19 chrX 158140909 158141223 -4458707 + AluSx SINE Alu 1 309 -3 287 377 27 0 chrX 158141680 158141826 -4458104 - MIR3 SINE MIR -21 187 38 303 321 65 34 chrX 158142984 158143246 -4456684 - L2 LINE L2 -414 2900 2631 1505 111 53 4 chrX 158143548 158143773 -4456157 - MER46A DNA MER2_type 0 236 1 198 0 0 0 chrX 158145198 158145220 -4454710 + (T)n Simple_repeat Simple_repeat 1 22 0 289 289 0 0 chrX 158145314 158145390 -4454540 - L1MB5 LINE L1 -7 6167 6092 202 278 18 124 chrX 158146237 158146406 -4453524 + MIR SINE MIR 31 181 -81 471 284 211 24 chrX 158146471 158147178 -4452752 - L2 LINE L2 -4 3268 2415 305 257 149 14 chrX 158147630 158147778 -4452152 - MIR3 SINE MIR -36 172 5 349 310 35 44 chrX 158148340 158148453 -4451477 - L1ME LINE L1 -394 5768 5657 809 142 84 7 chrX 158148454 158148609 -4451321 - MER4E LTR ERV1 -29 750 584 1719 202 3 5 chrX 158148620 158148987 -4450943 - L1M3 LINE L1 -513 5667 5302 186 71 0 0 chrX 158148997 158149025 -4450905 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 944 184 26 26 chrX 158149032 158149222 -4450708 - L1MC1 LINE L1 -6 6327 6138 351 264 64 132 chrX 158149230 158149480 -4450450 - L1MDb LINE L1 -5400 1009 777 23 0 0 0 chrX 158149957 158149980 -4449950 + AT_rich Low_complexity Low_complexity 1 23 0 887 181 7 0 chrX 158149980 158150135 -4449795 - L1MB3 LINE L1 -7 6176 6021 1188 207 107 10 chrX 158150149 158150449 -4449481 - L1MB5 LINE L1 -45 6129 5801 1347 171 0 5 chrX 158150582 158150798 -4449132 - AluJo SINE Alu -97 215 1 244 221 15 29 chrX 158150823 158150891 -4449039 + L1MC4a LINE L1 6607 6673 -1135 316 301 19 77 chrX 158150903 158151059 -4448871 + L1MC5 LINE L1 6815 6961 -1000 2326 206 22 7 chrX 158151077 158151474 -4448456 + L1ME1 LINE L1 5096 5528 -638 1988 138 3 3 chrX 158151474 158151772 -4448158 + AluJo SINE Alu 1 298 -14 2326 206 22 7 chrX 158151772 158152121 -4447809 + L1ME1 LINE L1 5528 5870 -296 336 24 0 0 chrX 158155976 158156017 -4443913 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 1703 155 34 3 chrX 158156416 158156707 -4443223 + AluJb SINE Alu 1 300 -12 503 238 23 86 chrX 158156729 158156985 -4442945 - L1M4 LINE L1 -1137 5507 5268 1923 155 76 29 chrX 158157065 158157510 -4442420 - L1MB7 LINE L1 0 6184 5719 2031 104 38 3 chrX 158157539 158157828 -4442102 - AluSx SINE Alu -13 299 1 225 260 110 0 chrX 158157842 158157942 -4441988 - L1M4 LINE L1 -4171 2475 2365 411 304 81 12 chrX 158157960 158158121 -4441809 - L1M4 LINE L1 -4119 2527 2356 1450 227 73 16 chrX 158158144 158158918 -4441012 - L1M4 LINE L1 -4536 2110 443 298 73 0 0 chrX 158159310 158159351 -4440579 + U2 snRNA snRNA 12 52 -136 236 29 0 29 chrX 158161934 158161968 -4437962 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5284 42 16 2 chrX 158161980 158162620 -4437310 - L1PA5 LINE L1 -8 6146 5498 234 337 93 26 chrX 158166751 158167023 -4432907 - L2 LINE L2 -281 2991 2703 1000 178 272 6 chrX 158167054 158167385 -4432545 - MSTA LTR MaLR -9 419 1 1657 184 7 13 chrX 158167783 158168088 -4431842 + AluJo SINE Alu 1 303 -9 258 254 0 30 chrX 158168422 158168489 -4431441 + MER63C DNA MER1_type 1 65 -865 2038 236 124 21 chrX 158168602 158169302 -4430628 + MER63C DNA MER1_type 114 885 -45 1457 241 15 26 chrX 158169303 158169750 -4430180 + L1ME1 LINE L1 5453 5839 -327 299 274 4 4 chrX 158170200 158170472 -4429458 + (CA)n Simple_repeat Simple_repeat 1 272 0 762 190 15 6 chrX 158170590 158170900 -4429030 - MLT1A1 LTR MaLR 0 365 19 290 244 30 30 chrX 158170921 158171052 -4428878 + (CA)n Simple_repeat Simple_repeat 1 131 0 2292 109 0 0 chrX 158172222 158172524 -4427406 - AluSp SINE Alu -11 302 1 447 354 52 19 chrX 158172645 158172835 -4427095 - L1M4 LINE L1 -3111 3035 2832 1811 159 13 0 chrX 158172835 158173137 -4426793 - AluJb SINE Alu -6 306 1 447 354 52 19 chrX 158173137 158173217 -4426713 - L1M4 LINE L1 -3314 2832 2756 1974 173 32 47 chrX 158173239 158173707 -4426223 - MLT1C LTR MaLR -6 461 1 379 333 55 41 chrX 158173709 158174000 -4425930 - L1M4 LINE L1 -3409 2737 2437 232 268 0 24 chrX 158174004 158174086 -4425844 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 1061 135 0 6 chrX 158174089 158174245 -4425685 + AluSq SINE Alu 1 155 -158 183 42 0 0 chrX 158174353 158174377 -4425553 + (TG)n Simple_repeat Simple_repeat 2 25 0 1472 165 125 9 chrX 158174377 158174705 -4425225 - MLT2D LTR ERVL -48 366 1 1562 213 78 50 chrX 158174938 158175015 -4424915 - LTR38 LTR ERV1 0 556 483 2047 136 7 0 chrX 158175015 158175317 -4424613 - AluSx SINE Alu -8 304 1 1562 213 78 50 chrX 158175317 158175755 -4424175 - LTR38 LTR ERV1 -73 483 27 1036 54 0 0 chrX 158175755 158175885 -4424045 - AluY SINE Alu -12 299 170 230 111 0 0 chrX 158175885 158175921 -4424009 - LTR38B LTR ERV1 -574 36 1 354 231 77 19 chrX 158176707 158176922 -4423008 - MER67C LTR ERV1 -277 433 146 293 308 28 0 chrX 158177121 158177228 -4422702 + MIR SINE MIR 42 151 -111 653 245 110 49 chrX 158177462 158177837 -4422093 + MLT1D LTR MaLR 1 362 -28 749 109 0 8 chrX 158177837 158177956 -4421974 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 2278 95 7 0 chrX 158177973 158178269 -4421661 - AluSx SINE Alu -14 298 1 277 309 79 16 chrX 158178645 158178771 -4421159 + MIR3 SINE MIR 7 140 -68 1502 199 51 14 chrX 158178880 158179236 -4420694 - MLT1C LTR MaLR -98 369 1 559 277 120 51 chrX 158179351 158179726 -4420204 + MLT1J LTR MaLR 111 511 0 180 0 0 0 chrX 158179963 158179983 -4419947 + (ATTTG)n Simple_repeat Simple_repeat 5 24 0 331 203 16 0 chrX 158179985 158180049 -4419881 - MLT1A2 LTR MaLR -70 304 240 1202 146 0 85 chrX 158180095 158180156 -4419774 + AluJo SINE Alu 87 152 -160 2085 110 7 0 chrX 158180156 158180447 -4419483 + AluSx SINE Alu 1 293 -19 1202 146 0 85 chrX 158180447 158180632 -4419298 + AluJo SINE Alu 152 312 0 2110 106 7 27 chrX 158180692 158181028 -4418902 + AluSc SINE Alu 1 330 0 2118 138 0 0 chrX 158181032 158181344 -4418586 + AluSx SINE Alu 1 312 0 1490 220 11 16 chrX 158181629 158182001 -4417929 + L1ME1 LINE L1 4425 4794 -1352 1694 178 21 35 chrX 158182001 158182312 -4417618 - MLT1A2 LTR MaLR 0 374 67 2524 108 17 8 chrX 158182312 158182673 -4417257 + THE1B LTR MaLR 1 364 0 1694 178 21 35 chrX 158182673 158182738 -4417192 - MLT1A2 LTR MaLR -307 67 3 3598 198 37 34 chrX 158182757 158183445 -4416485 + L1ME1 LINE L1 4813 5507 -659 2845 130 26 0 chrX 158183445 158183860 -4416070 - MSTA LTR MaLR 0 428 3 3598 198 37 34 chrX 158183860 158184517 -4415413 + L1ME1 LINE L1 5507 6160 -6 360 0 0 0 chrX 158187095 158187135 -4412795 + (TG)n Simple_repeat Simple_repeat 2 41 0 1354 219 145 19 chrX 158192392 158192807 -4407123 - MLT1C LTR MaLR 0 467 1 246 213 0 16 chrX 158193345 158193406 -4406524 + HAL1b LINE L1 395 454 -894 2214 149 70 34 chrX 158193409 158193826 -4406104 + MSTB1 LTR MaLR 1 432 0 307 321 74 44 chrX 158194387 158194817 -4405113 + L1MC4 LINE L1 7492 7934 -108 3141 163 25 53 chrX 158194841 158195219 -4404711 + L1MB5 LINE L1 5565 5952 -222 1629 208 73 62 chrX 158195219 158195672 -4404258 + MER74C LTR ERVL 3 460 0 3141 163 25 53 chrX 158195672 158195880 -4404050 + L1MB5 LINE L1 5952 6135 -39 2039 121 0 3 chrX 158195880 158196169 -4403761 + AluJb SINE Alu 1 288 -24 3141 163 25 53 chrX 158196169 158196208 -4403722 + L1MB5 LINE L1 6135 6174 0 554 276 176 9 chrX 158197667 158198152 -4401778 + L2 LINE L2 2689 3257 -56 27 29 0 0 chrX 158199040 158199074 -4400856 + GC_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chrX 158199132 158199156 -4400774 + GC_rich Low_complexity Low_complexity 1 24 0 410 247 101 34 chrX 158200148 158200539 -4399391 + MLT1D LTR MaLR 1 452 -15 1818 161 0 7 chrX 158202857 158203149 -4396781 + AluJo SINE Alu 1 290 -22 517 308 131 76 chrX 158203420 158204083 -4395847 + L2 LINE L2 2285 2979 -334 385 188 0 0 chrX 158204105 158204174 -4395756 + LTR67 LTR ERVL 113 181 -376 181 336 74 34 chrX 158204301 158204450 -4395480 + L2 LINE L2 1971 2125 -1189 831 176 131 11 chrX 158204630 158204886 -4395044 - MLT1F LTR MaLR -1 566 186 325 283 26 33 chrX 158204891 158205043 -4394887 + GA-rich Low_complexity Low_complexity 1 151 0 440 200 11 11 chrX 158205118 158205213 -4394717 - MLT1F LTR MaLR -466 101 7 294 239 0 0 chrX 158205345 158205412 -4394518 - MLT1F LTR MaLR -104 438 372 651 249 17 11 chrX 158205471 158205652 -4394278 + L1ME LINE L1 6 187 -5883 439 300 69 47 chrX 158205700 158205933 -4393997 + L1ME LINE L1 279 516 -5554 240 35 0 0 chrX 158206002 158206031 -4393899 + (CCA)n Simple_repeat Simple_repeat 3 31 0 356 246 62 101 chrX 158206034 158206213 -4393717 + L1ME LINE L1 544 715 -5355 21 0 0 0 chrX 158206224 158206245 -4393685 + AT_rich Low_complexity Low_complexity 1 21 0 1868 139 11 7 chrX 158206269 158206550 -4393380 + AluJb SINE Alu 21 302 -10 1965 156 0 3 chrX 158206573 158206868 -4393062 - AluJb SINE Alu -18 294 1 379 171 24 0 chrX 158206956 158207038 -4392892 - Tigger5 DNA MER2_type -1 2322 2239 347 164 14 14 chrX 158207051 158207124 -4392806 - Tigger5 DNA MER2_type 0 2323 2251 271 211 0 0 chrX 158207093 158207145 -4392785 - Tigger5 DNA MER2_type -2268 55 4 * 1717 278 79 21 chrX 158207164 158208241 -4391689 + L1ME LINE L1 878 2016 -4245 611 244 19 38 chrX 158208216 158208425 -4391505 + L1ME LINE L1 2335 2539 -3541 * 2160 45 41 0 chrX 158208426 158208694 -4391236 + AluSc SINE Alu 21 299 -10 347 43 0 57 chrX 158208728 158208798 -4391132 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 447 289 35 40 chrX 158210374 158210881 -4389049 + L1ME LINE L1 2610 3118 -2962 1896 150 0 7 chrX 158210881 158211193 -4388737 + AluJb SINE Alu 1 310 0 266 0 29 0 chrX 158211192 158211226 -4388704 + (CA)n Simple_repeat Simple_repeat 2 36 0 447 289 35 40 chrX 158211193 158211460 -4388470 + L1ME LINE L1 3118 3423 -2657 372 307 0 6 chrX 158212052 158212314 -4387616 + GA-rich Low_complexity Low_complexity 1 260 0 418 295 111 46 chrX 158415309 158415570 -4184360 + L2 LINE L2 2992 3269 -3 228 67 0 0 chrX 158415888 158415918 -4184012 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 279 361 7 7 chrX 158415922 158416066 -4183864 + (TGAG)n Simple_repeat Simple_repeat 4 147 0 * 299 308 0 10 chrX 158415963 158416067 -4183863 + (TGAA)n Simple_repeat Simple_repeat 2 104 0 674 305 52 9 chrX 158417573 158417786 -4182144 - MIR SINE MIR -24 238 17 438 229 0 0 chrX 158418597 158418680 -4181250 - MER96 DNA MER1_type? -84 91 9 237 237 17 17 chrX 158418755 158418814 -4181116 + MIR SINE MIR 106 164 -98 185 62 0 31 chrX 158419006 158419038 -4180892 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1048 313 77 37 chrX 158419369 158419970 -4179960 - L2 LINE L2 -460 2854 2230 361 198 62 0 chrX 158420063 158420144 -4179786 - L2 LINE L2 -1345 1969 1884 2779 262 70 53 chrX 158420147 158421338 -4178592 - L2 LINE L2 -652 2662 1451 321 336 15 23 chrX 158421472 158421603 -4178327 - MIR3 SINE MIR -76 132 3 206 339 48 32 chrX 158422149 158422273 -4177657 - MIR SINE MIR -116 146 21 290 320 68 0 chrX 158422792 158422895 -4177035 + MIR3 SINE MIR 91 200 -8 243 0 0 0 chrX 158422897 158422924 -4177006 + (TC)n Simple_repeat Simple_repeat 2 28 0 1362 227 75 2 chrX 158423505 158423933 -4175997 + Charlie4a DNA MER1_type 44 502 -6 845 253 82 0 chrX 158424631 158424852 -4175078 + MIR SINE MIR 20 262 0 285 292 62 31 chrX 158425377 158425507 -4174423 + L2 LINE L2 2922 3055 -217 234 0 0 0 chrX 158426988 158427014 -4172916 + (TC)n Simple_repeat Simple_repeat 1 26 0 309 341 70 0 chrX 158427896 158428025 -4171905 - MIR SINE MIR -65 143 28 2263 109 16 0 chrX 158428190 158428494 -4171436 + AluSc SINE Alu 1 309 0 491 328 61 28 chrX 158428658 158428905 -4171025 - MIR SINE MIR -3 259 5 240 324 113 21 chrX 158429288 158429430 -4170500 + MER5B DNA MER1_type 9 163 -15 207 245 61 31 chrX 158429554 158429652 -4170278 + (TATATG)n Simple_repeat Simple_repeat 1 101 0 6430 212 24 16 chrX 158429798 158432664 -4167266 + L1MC1 LINE L1 3435 6326 -7 1153 251 88 15 chrX 158432712 158433273 -4166657 + L1ME2 LINE L1 2117 2689 -3526 3637 255 85 37 chrX 158433326 158435307 -4164623 + L1ME2 LINE L1 2996 5071 -1144 8631 170 12 7 chrX 158435310 158438012 -4161918 + L1PB3 LINE L1 3436 6148 -6 23 0 0 0 chrX 158438033 158438056 -4161874 + AT_rich Low_complexity Low_complexity 1 23 0 2311 265 65 9 chrX 158438056 158439148 -4160782 + L1ME2 LINE L1 5061 6214 -19 220 191 0 0 chrX 158439262 158439304 -4160626 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 715 271 84 27 chrX 158439439 158439492 -4160438 + L1ME LINE L1 2105 2154 -4061 2018 187 73 0 chrX 158439492 158439888 -4160042 + MSTB LTR MaLR 2 426 0 715 271 84 27 chrX 158439888 158440398 -4159532 + L1ME LINE L1 2154 2657 -3558 329 214 62 18 chrX 158440413 158440525 -4159405 + L1ME LINE L1 2723 2839 -3376 * 3059 211 65 28 chrX 158440507 158441308 -4158622 + L1M1 LINE L1 2791 3561 -4004 210 37 0 0 chrX 158441308 158441335 -4158595 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3059 211 65 28 chrX 158441335 158441899 -4158031 + L1M1 LINE L1 3561 4206 -3359 1288 214 105 4 chrX 158441899 158442166 -4157764 - AluJo SINE Alu -18 294 1 3059 211 65 28 chrX 158442166 158442309 -4157621 + L1M1 LINE L1 4206 4342 -3223 2264 232 50 28 chrX 158442322 158443441 -4156489 + L1ME LINE L1 4684 5834 -401 1420 228 104 25 chrX 158443461 158443978 -4155952 + L1ME1 LINE L1 5602 6159 -7 243 286 43 0 chrX 158444093 158444163 -4155767 - MIR SINE MIR -85 177 105 270 276 0 92 chrX 158444203 158444301 -4155629 - MIR SINE MIR -100 108 20 249 33 0 0 chrX 158444447 158444477 -4155453 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 719 288 171 34 chrX 158444987 158445372 -4154558 + L2 LINE L2 2876 3313 0 183 338 13 40 chrX 158445929 158446080 -4153850 - MIR3 SINE MIR -2 206 60 4614 160 57 52 chrX 158446218 158447730 -4152200 + L1MA9 LINE L1 4738 6290 -22 24 0 0 0 chrX 158447730 158447754 -4152176 + AT_rich Low_complexity Low_complexity 1 24 0 209 302 0 0 chrX 158448812 158448865 -4151065 - L2 LINE L2 -10 3303 3251 581 293 131 4 chrX 158450008 158450237 -4149693 + MIR SINE MIR 2 259 -3 392 212 25 59 chrX 158451028 158451146 -4148784 - MIR SINE MIR -84 178 65 2177 165 11 40 chrX 158451269 158451742 -4148188 - L1MB5 LINE L1 -9 6165 5707 327 329 141 42 chrX 158451941 158452254 -4147676 - L2 LINE L2 -3 3269 2926 572 351 4 8 chrX 158452285 158452533 -4147397 - L2 LINE L2 -556 2758 2512 1363 243 6 9 chrX 158452543 158452864 -4147066 + L2 LINE L2 2005 2324 -990 2578 204 77 103 chrX 158452884 158454120 -4145810 + L1M4 LINE L1 4127 5330 -816 * 6395 151 17 9 chrX 158454116 158456356 -4143574 + L1MA5A LINE L1 4032 6284 -13 1717 77 48 0 chrX 158456356 158456598 -4143332 + L1PA13 LINE L1 5904 6163 0 473 186 53 106 chrX 158456603 158456754 -4143176 + L1P3 LINE L1 5423 5565 -607 647 212 46 23 chrX 158457005 158457222 -4142708 + L1M4 LINE L1 3849 4070 -2076 479 293 12 42 chrX 158457751 158457918 -4142012 + L2 LINE L2 2586 2747 -567 502 272 152 0 chrX 158458090 158458281 -4141649 - MIR SINE MIR -33 229 10 707 298 37 9 chrX 158458640 158458858 -4141072 + MIR SINE MIR 15 238 -24 1908 219 116 24 chrX 158458929 158459587 -4140343 - L1ME2 LINE L1 0 6233 5516 248 129 0 157 chrX 158459730 158459800 -4140130 - MIR SINE MIR -83 179 121 281 357 54 8 chrX 158459802 158459931 -4139999 - L2 LINE L2 0 3272 3138 6837 94 16 8 chrX 158461075 158462138 -4137792 - L1MA1 LINE L1 -2 6300 5232 2728 248 53 16 chrX 158462140 158462542 -4137388 - L1ME2 LINE L1 -1441 4774 4388 2259 207 70 0 chrX 158462542 158463010 -4136920 - MLT1D LTR MaLR 0 505 5 2728 248 53 16 chrX 158463010 158463132 -4136798 - L1ME2 LINE L1 -1827 4388 4272 686 81 9 0 chrX 158463132 158463243 -4136687 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 2728 248 53 16 chrX 158463243 158463777 -4136153 - L1ME2 LINE L1 -1943 4272 3676 872 213 92 8 chrX 158463779 158464028 -4135902 + L1M4 LINE L1 3713 3982 -2164 3568 257 75 40 chrX 158464029 158464085 -4135845 - L1ME2 LINE L1 -4702 1694 1641 195 42 0 0 chrX 158464085 158464109 -4135821 + (CATAT)n Simple_repeat Simple_repeat 5 28 0 3568 257 75 40 chrX 158464109 158464401 -4135529 - L1ME2 LINE L1 -4755 1641 1360 2199 188 24 12 chrX 158464401 158464822 -4135108 + MSTB LTR MaLR 1 426 0 3568 257 75 40 chrX 158464822 158466076 -4133854 - L1ME2 LINE L1 -5036 1360 36 850 276 65 30 chrX 158466975 158467344 -4132586 - L2 LINE L2 -621 2693 2312 203 380 60 15 chrX 158468555 158468755 -4131175 - L2 LINE L2 -225 3047 2839 195 373 35 35 chrX 158469813 158469982 -4129948 - MIR3 SINE MIR -2 206 38 2199 204 55 20 chrX 158469989 158470463 -4129467 + MLT2B1 LTR ERVL 1 533 -21 214 73 49 0 chrX 158470463 158470504 -4129426 + CT-rich Low_complexity Low_complexity 1 43 0 264 59 0 0 chrX 158470512 158470546 -4129384 + (TG)n Simple_repeat Simple_repeat 1 34 0 250 266 40 48 chrX 158472143 158472267 -4127663 - MIR3 SINE MIR -74 134 12 981 315 45 9 chrX 158472516 158472955 -4126975 + L2 LINE L2 2623 3073 -240 891 146 7 0 chrX 158472962 158473106 -4126824 + L1M2 LINE L1 5506 5650 -650 652 103 21 10 chrX 158473106 158473203 -4126727 + MER4A LTR ERV1 1 98 -566 337 163 10 6 chrX 158473203 158473307 -4126623 + MER4A LTR ERV1 261 423 -241 2261 109 30 43 chrX 158473307 158473675 -4126255 - THE1B LTR MaLR 0 364 2 11815 98 2 1 chrX 158473676 158475254 -4124676 - THE1A-int LTR MaLR 0 1580 1 2524 101 9 0 chrX 158475259 158475606 -4124324 - THE1A LTR MaLR -5 350 1 1909 98 93 35 chrX 158475609 158476007 -4123923 + MER4-int LTR ERV1 159 713 -5885 248 89 0 22 chrX 158476007 158476052 -4123878 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1909 98 93 35 chrX 158476052 158476169 -4123761 + MER4-int LTR ERV1 713 822 -5776 266 136 0 45 chrX 158476248 158476292 -4123638 + LTR49 LTR ERV1 272 313 -282 2248 137 75 13 chrX 158476312 158476766 -4123164 + MER4-int LTR ERV1 993 1474 -5124 * 14236 149 122 96 chrX 158476753 158477067 -4122863 + MER4-int LTR ERV1 1585 1890 -4708 2045 121 3 0 chrX 158477067 158477365 -4122565 - AluSg SINE Alu -11 299 1 14236 149 122 96 chrX 158477365 158478500 -4121430 + MER4-int LTR ERV1 1890 2995 -3603 7192 53 7 2 chrX 158478500 158479681 -4120249 + L1PA6 LINE L1 4967 6151 -3 14236 149 122 96 chrX 158479681 158480201 -4119729 + MER4-int LTR ERV1 2995 3500 -3098 288 0 0 0 chrX 158480201 158480233 -4119697 + (TG)n Simple_repeat Simple_repeat 1 32 0 14236 149 122 96 chrX 158480233 158480860 -4119070 + MER4-int LTR ERV1 3500 4110 -2488 1168 88 0 0 chrX 158480860 158481007 -4118923 + AluY SINE Alu 1 147 -164 1876 103 0 0 chrX 158481007 158481268 -4118662 + AluY SINE Alu 51 311 0 14236 149 122 96 chrX 158481268 158483313 -4116617 + MER4-int LTR ERV1 4109 6498 -100 222 146 49 0 chrX 158483424 158483465 -4116465 + MIR SINE MIR 55 97 -111 687 219 121 19 chrX 158483719 158483934 -4115996 - MIR SINE MIR -11 251 15 10169 118 30 3 chrX 158484069 158485495 -4114435 + THE1B-int LTR MaLR 116 1580 0 2520 119 0 19 chrX 158485495 158485866 -4114064 + THE1B LTR MaLR 1 364 0 1009 322 24 5 chrX 158486931 158487307 -4112623 - L2 LINE L2 -562 2752 2370 2300 82 0 3 chrX 158487466 158487769 -4112161 + AluY SINE Alu 1 302 -9 229 309 44 0 chrX 158487938 158488006 -4111924 - L2 LINE L2 -1 3271 3201 494 312 85 31 chrX 158488329 158488740 -4111190 + L2 LINE L2 2658 3091 -222 232 267 160 69 chrX 158488890 158489021 -4110909 - MIR SINE MIR -36 172 30 235 261 0 0 chrX 158489774 158489833 -4110097 + polypyrimidine Low_complexity Low_complexity 1 59 0 206 93 0 47 chrX 158489845 158489888 -4110042 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 536 313 75 52 chrX 158490417 158490724 -4109206 + L2 LINE L2 2798 3118 -154 2102 110 0 0 chrX 158490724 158491014 -4108916 - AluSx SINE Alu -7 305 16 536 313 75 52 chrX 158491014 158491155 -4108775 + L2 LINE L2 3118 3254 -18 465 193 290 7 chrX 158491212 158491357 -4108573 + MER5A DNA MER1_type 4 189 0 332 320 76 62 chrX 158492228 158492650 -4107280 + L2 LINE L2 858 1285 -2029 957 308 121 80 chrX 158492796 158493211 -4106719 + L2 LINE L2 1321 1718 -1596 454 96 19 106 chrX 158493211 158493315 -4106615 - L1MA10 LINE L1 0 6334 6240 957 308 121 80 chrX 158493315 158494148 -4105782 + L2 LINE L2 1718 2620 -694 897 327 43 32 chrX 158494723 158495160 -4104770 + L2 LINE L2 2804 3245 -68 289 387 140 5 chrX 158496139 158496325 -4103605 - L2 LINE L2 -515 2799 2589 1338 239 173 18 chrX 158496325 158496777 -4103153 - LTR33A LTR ERVL 0 523 2 332 328 219 22 chrX 158496933 158497253 -4102677 - L2 LINE L2 -945 2369 1987 364 264 149 55 chrX 158497968 158498203 -4101727 + L2 LINE L2 3056 3312 -1 368 256 72 40 chrX 158498224 158498349 -4101581 - MIR3 SINE MIR -51 157 29 396 311 147 16 chrX 158498429 158498619 -4101311 + MIR SINE MIR 13 227 -35 281 230 186 44 chrX 158499098 158499211 -4100719 + MIR3 SINE MIR 61 189 -19 310 317 0 0 chrX 158500314 158500418 -4099512 + L1ME1 LINE L1 5999 6102 -64 1403 280 20 24 chrX 158500427 158500981 -4098949 + L1M4 LINE L1 2558 3109 -3037 272 250 0 28 chrX 158501914 158501986 -4097944 + GA-rich Low_complexity Low_complexity 2 71 0 21 0 0 0 chrX 158502192 158502213 -4097717 + AT_rich Low_complexity Low_complexity 1 21 0 1920 244 77 25 chrX 158502724 158503488 -4096442 + L1M4 LINE L1 4164 4967 -1179 306 0 0 0 chrX 158503488 158503522 -4096408 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 1865 182 26 3 chrX 158503535 158503876 -4096054 - MLT2C1 LTR ERVL -48 349 1 365 139 111 28 chrX 158503878 158503986 -4095944 + L1M4 LINE L1 4963 5079 -1067 931 197 30 172 chrX 158503986 158504421 -4095509 - MLT1A2 LTR MaLR 0 374 3 2168 217 60 5 chrX 158504421 158505364 -4094566 + L1MC/D LINE L1 4791 5776 -744 775 216 91 47 chrX 158505360 158505680 -4094250 + L1M4 LINE L1 4789 5122 -1024 * 715 191 69 29 chrX 158505672 158506044 -4093886 + L1MC4a LINE L1 6664 7588 -373 * 588 255 14 24 chrX 158506237 158506449 -4093481 + L1MC5 LINE L1 7695 7904 -57 323 340 67 59 chrX 158506460 158506881 -4093049 + L1M4 LINE L1 3338 3761 -2385 475 326 27 31 chrX 158507427 158507651 -4092279 + L1M4 LINE L1 4365 4587 -1559 372 22 0 0 chrX 158508110 158508155 -4091775 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1274 96 0 55 chrX 158508160 158508359 -4091571 - AluSq SINE Alu -48 265 78 226 211 68 88 chrX 158508367 158508514 -4091416 - MER112 DNA MER1_type -79 181 38 227 206 0 63 chrX 158508983 158509046 -4090884 + C-rich Low_complexity Low_complexity 4 62 0 236 211 6 50 chrX 158509235 158509415 -4090515 + C-rich Low_complexity Low_complexity 2 173 0 333 265 22 44 chrX 158509876 158510057 -4089873 + C-rich Low_complexity Low_complexity 4 180 0 297 295 16 38 chrX 158510473 158510656 -4089274 + C-rich Low_complexity Low_complexity 1 179 0 349 282 22 33 chrX 158511161 158511342 -4088588 + C-rich Low_complexity Low_complexity 1 179 0 308 302 6 39 chrX 158511843 158512025 -4087905 + C-rich Low_complexity Low_complexity 4 179 0 297 295 16 38 chrX 158512518 158512701 -4087229 + C-rich Low_complexity Low_complexity 1 179 0 182 88 0 29 chrX 158513204 158513238 -4086692 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 254 254 22 43 chrX 158513255 158513393 -4086537 + C-rich Low_complexity Low_complexity 6 140 0 233 245 10 0 chrX 158513888 158513990 -4085940 + C-rich Low_complexity Low_complexity 6 108 0 440 265 20 27 chrX 158514455 158514602 -4085328 + C-rich Low_complexity Low_complexity 5 150 0 21 0 0 0 chrX 158518996 158519017 -4080913 + AT_rich Low_complexity Low_complexity 1 21 0 189 294 15 0 chrX 158519110 158519178 -4080752 - L2 LINE L2 -23 3249 3181 182 312 39 52 chrX 158520224 158520301 -4079629 - MIR SINE MIR -167 95 20 1668 91 0 4 chrX 158521327 158521559 -4078371 + L1PA14 LINE L1 5930 6160 -1 518 269 79 45 chrX 158521853 158522180 -4077750 + MLT1J2 LTR MaLR 82 450 0 21 0 0 0 chrX 158522203 158522224 -4077706 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chrX 158522401 158522426 -4077504 + AT_rich Low_complexity Low_complexity 1 25 0 314 326 65 41 chrX 158522554 158522799 -4077131 - L1ME LINE L1 -329 5792 5542 189 107 0 0 chrX 158524040 158524068 -4075862 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 553 235 7 0 chrX 158524681 158524949 -4074981 + (TA)n Simple_repeat Simple_repeat 1 269 0 381 341 0 12 chrX 158524952 158525116 -4074814 + (TATATG)n Simple_repeat Simple_repeat 6 167 0 1793 146 39 0 chrX 158525156 158525436 -4074494 - AluSp SINE Alu -22 291 1 1884 54 0 50 chrX 158526219 158526460 -4073470 - AluY SINE Alu -82 229 1 3660 257 59 26 chrX 158526884 158528654 -4071276 - L1MEc LINE L1 -4420 1976 38 306 312 28 0 chrX 158528782 158528923 -4071007 + L1ME4a LINE L1 5973 6117 -4 22 0 0 0 chrX 158529209 158529231 -4070699 + AT_rich Low_complexity Low_complexity 1 22 0 1960 275 53 21 chrX 158530427 158530890 -4069040 - L1M4 LINE L1 -2892 4065 3618 1658 169 116 6 chrX 158530890 158531244 -4068686 - MSTD LTR MaLR 0 396 4 1960 275 53 21 chrX 158531244 158531688 -4068242 - L1M4 LINE L1 -3339 3618 3129 2357 234 57 54 chrX 158531752 158532628 -4067302 - L1ME1 LINE L1 -51 6115 5234 2661 36 0 3 chrX 158532628 158532933 -4066997 - AluY SINE Alu -7 304 1 2357 234 57 54 chrX 158532933 158533426 -4066504 - L1ME1 LINE L1 -932 5234 4744 1425 156 7 66 chrX 158533419 158533720 -4066210 + L1M2 LINE L1 5526 5808 -504 * 302 283 51 14 chrX 158533720 158533858 -4066072 - L1M4 LINE L1 -4325 2633 2491 428 163 25 25 chrX 158533876 158533956 -4065974 + MLT1C LTR MaLR 3 82 -423 777 188 161 58 chrX 158533992 158534253 -4065677 + MLT1C LTR MaLR 179 466 -1 599 208 101 0 chrX 158534273 158534422 -4065508 - L1M4 LINE L1 -6684 175 12 5935 121 10 8 chrX 158534537 158536209 -4063721 - L1PA15 LINE L1 -3 6162 4480 839 84 0 17 chrX 158536939 158537058 -4062872 + AluY SINE Alu 195 311 0 444 303 188 5 chrX 158537370 158537578 -4062352 + L2 LINE L2 2554 2799 -515 2086 192 27 10 chrX 158537590 158538005 -4061925 + MLT2B1 LTR ERVL 6 395 -125 2555 333 60 7 chrX 158538314 158539339 -4060591 + HERV16 LTR ERVL 475 1553 -3443 492 257 0 0 chrX 158539379 158539484 -4060446 + HERV16 LTR ERVL 1679 1783 -3213 276 250 32 24 chrX 158539486 158539610 -4060320 + (TA)n Simple_repeat Simple_repeat 1 125 0 456 19 0 0 chrX 158539612 158539665 -4060265 + (TG)n Simple_repeat Simple_repeat 2 54 0 385 189 42 133 chrX 158539675 158539818 -4060112 - HERV16 LTR ERVL -1453 3543 3414 * 2740 328 101 26 chrX 158539813 158541505 -4058425 - HERV16 LTR ERVL -2186 3578 1761 2834 329 46 34 chrX 158541603 158541765 -4058165 - HERV16 LTR ERVL -3459 1537 1378 1895 204 11 6 chrX 158541765 158542128 -4057802 + MLT1A1 LTR MaLR 1 365 0 2834 329 46 34 chrX 158542128 158542698 -4057232 - HERV16 LTR ERVL -3618 1378 816 2441 70 0 0 chrX 158542698 158542998 -4056932 - AluY SINE Alu -11 300 1 2834 329 46 34 chrX 158542998 158543694 -4056236 - HERV16 LTR ERVL -4180 816 91 255 309 0 0 chrX 158543776 158543831 -4056099 - LTR16B LTR ERVL -303 161 107 380 202 131 0 chrX 158543835 158543919 -4056011 - MER53 DNA DNA -94 95 1 1039 332 86 34 chrX 158544002 158545039 -4054891 + HERV16 LTR ERVL 4263 5307 -178 699 319 58 8 chrX 158545330 158545590 -4054340 + LTR16A LTR ERVL 172 444 -6 314 321 47 31 chrX 158545665 158545858 -4054072 - L1M4 LINE L1 -1008 5138 4943 251 328 17 69 chrX 158546590 158546764 -4053166 + MIR3 SINE MIR 25 189 -19 258 278 0 65 chrX 158547420 158547528 -4052402 + MIR SINE MIR 112 212 -50 411 383 29 19 chrX 158551743 158552122 -4047808 + L3 LINE CR1 1086 1468 -109 312 272 80 83 chrX 158554602 158554903 -4045027 - L2 LINE L2 -685 2629 2330 249 381 0 0 chrX 158554905 158555010 -4044920 - L2 LINE L2 -687 2627 2523 1984 130 24 3 chrX 158555379 158555672 -4044258 - AluSx SINE Alu -11 301 3 387 0 0 0 chrX 158555722 158555765 -4044165 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 383 275 65 7 chrX 158556074 158556212 -4043718 + MIR3 SINE MIR 20 165 -43 251 361 164 15 chrX 158556741 158557010 -4042920 - L3 LINE CR1 -13 1564 1256 291 141 90 77 chrX 158557038 158557116 -4042814 + MER104 DNA Tc2 44 122 -58 271 170 0 0 chrX 158558702 158558749 -4041181 + AluSg SINE Alu 1 47 -255 1710 113 0 0 chrX 158558835 158559066 -4040864 + AluSg SINE Alu 51 281 -29 266 293 27 0 chrX 158559421 158559496 -4040434 - MIR SINE MIR -64 144 68 1929 229 89 36 chrX 158561765 158562315 -4037615 + MLT1E LTR MaLR 1 579 -14 188 360 96 5 chrX 158562818 158563015 -4036915 - L2 LINE L2 -189 3083 2869 354 305 78 39 chrX 158563815 158563969 -4035961 - MIR3 SINE MIR -11 197 38 757 227 84 0 chrX 158565046 158565249 -4034681 + L1ME3A LINE L1 5945 6164 -6 690 207 52 58 chrX 158565270 158565579 -4034351 + L1MC5 LINE L1 7532 7838 -123 21 0 0 0 chrX 158565617 158565638 -4034292 + AT_rich Low_complexity Low_complexity 1 21 0 571 237 68 63 chrX 158565663 158565744 -4034186 + L1ME3A LINE L1 5947 6026 -144 645 38 0 0 chrX 158565744 158565824 -4034106 + (TG)n Simple_repeat Simple_repeat 1 80 0 571 237 68 63 chrX 158565824 158565949 -4033981 + L1ME3A LINE L1 6026 6154 -16 436 248 18 9 chrX 158566969 158567078 -4032852 - MIR SINE MIR -62 146 37 181 95 24 24 chrX 158568645 158568687 -4031243 + (CCCCG)n Simple_repeat Simple_repeat 4 45 0 21 57 0 0 chrX 158568847 158568882 -4031048 + GC_rich Low_complexity Low_complexity 1 35 0 336 257 53 123 chrX 158569690 158569974 -4029956 + L2 LINE L2 3033 3296 -17 587 200 70 0 chrX 158570130 158570245 -4029685 + MER45A DNA AcHobo 56 178 0 334 298 76 25 chrX 158570392 158570550 -4029380 + L2 LINE L2 3105 3270 -2 327 85 0 0 chrX 158571601 158571648 -4028282 + (TG)n Simple_repeat Simple_repeat 1 47 0 574 290 10 20 chrX 158572228 158572428 -4027502 + MIR SINE MIR 51 248 -14 247 276 207 0 chrX 158572688 158572804 -4027126 - L2 LINE L2 -1047 2267 2128 257 344 97 27 chrX 158573227 158573413 -4026517 - L2 LINE L2 -1480 1834 1636 3236 249 119 75 chrX 158573546 158574387 -4025543 - L2 LINE L2 0 3313 2510 294 29 0 0 chrX 158574387 158574422 -4025508 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3236 249 119 75 chrX 158574422 158575276 -4024654 - L2 LINE L2 -803 2510 1561 229 286 107 0 chrX 158575280 158575364 -4024566 - L2 LINE L2 -2819 495 403 245 335 28 39 chrX 158575423 158575602 -4024328 - L2 LINE L2 -2909 405 229 461 245 68 41 chrX 158575911 158576058 -4023872 - L2 LINE L2 -43 3270 3120 2412 78 7 0 chrX 158576558 158576864 -4023066 - AluY SINE Alu -3 308 1 318 245 53 32 chrX 158577527 158577621 -4022309 - L3 LINE CR1 -89 1488 1393 397 283 79 33 chrX 158578313 158578465 -4021465 - MLT1L LTR MaLR 0 615 457 355 327 83 67 chrX 158578912 158579404 -4020526 - L2 LINE L2 -571 2743 2244 507 323 15 9 chrX 158579454 158579649 -4020281 - MIR SINE MIR -51 211 19 1089 285 56 19 chrX 158581150 158581709 -4018221 - L2 LINE L2 0 3313 2724 2572 121 3 8 chrX 158581713 158582103 -4017827 + MLT1B LTR MaLR 3 390 0 250 295 26 0 chrX 158582103 158582181 -4017749 - L2 LINE L2 -588 2726 2647 219 316 0 0 chrX 158582583 158582640 -4017290 + MIR SINE MIR 19 75 -133 843 316 68 29 chrX 158582850 158583338 -4016592 + MLT1J LTR MaLR 1 507 -4 373 19 37 0 chrX 158583790 158583844 -4016086 + (GA)n Simple_repeat Simple_repeat 1 56 0 414 231 0 51 chrX 158584085 158584202 -4015728 - L1MC5 LINE L1 -70 7891 7781 2510 250 66 13 chrX 158584334 158585176 -4014754 - L1ME3A LINE L1 -83 6087 5208 1000 250 175 50 chrX 158585203 158585707 -4014223 - L1ME3A LINE L1 -1062 5084 4518 1893 185 50 25 chrX 158585731 158586174 -4013756 + L1MB8 LINE L1 5719 6172 -6 360 0 0 0 chrX 158586176 158586216 -4013714 + (CA)n Simple_repeat Simple_repeat 2 41 0 449 316 114 8 chrX 158586425 158586662 -4013268 + MLT1J LTR MaLR 1 262 -249 1692 104 41 0 chrX 158587303 158587524 -4012406 + MER30 DNA MER1_type 1 230 0 297 296 11 0 chrX 158587895 158587983 -4011947 - MIR SINE MIR -66 142 54 376 314 10 0 chrX 158588813 158588915 -4011015 - MER5A DNA MER1_type -1 188 86 293 237 73 102 chrX 158589164 158589341 -4010589 - MIR SINE MIR -63 145 22 279 0 0 0 chrX 158590260 158590291 -4009639 + (TG)n Simple_repeat Simple_repeat 1 31 0 974 264 38 24 chrX 158590304 158590677 -4009253 - L2 LINE L2 -239 3074 2698 2833 241 22 50 chrX 158590687 158591095 -4008835 - L1ME2 LINE L1 -10 6088 5670 2415 74 3 0 chrX 158591095 158591392 -4008538 - AluSp SINE Alu -15 298 1 2833 241 22 50 chrX 158591392 158591972 -4007958 - L1ME2 LINE L1 -428 5670 5123 2230 100 0 0 chrX 158592122 158592429 -4007501 - AluSg SINE Alu 0 307 1 2734 202 50 79 chrX 158592608 158592811 -4007119 - L1ME2 LINE L1 -16 6148 5941 2363 76 3 7 chrX 158592811 158593113 -4006817 - AluY SINE Alu -10 301 1 2734 202 50 79 chrX 158593113 158593361 -4006569 - L1ME2 LINE L1 -223 5941 5687 1653 133 45 151 chrX 158593361 158593561 -4006369 - MER1B DNA MER1_type -2373 337 194 2020 123 32 0 chrX 158593561 158593845 -4006085 + AluSx SINE Alu 4 296 -16 1653 133 45 151 chrX 158593845 158594021 -4005909 - MER1B DNA MER1_type -2516 194 1 2734 202 50 79 chrX 158594021 158594405 -4005525 - L1ME2 LINE L1 -477 5687 5293 1792 185 0 7 chrX 158594405 158594702 -4005228 - AluJo SINE Alu -17 295 1 2734 202 50 79 chrX 158594702 158595344 -4004586 - L1ME2 LINE L1 -871 5293 4695 1495 249 16 38 chrX 158595350 158595658 -4004272 - L1ME2 LINE L1 -983 5097 4803 2038 192 37 3 chrX 158595658 158596007 -4003923 + MLT1A1 LTR MaLR 5 365 0 1495 249 16 38 chrX 158596007 158596203 -4003727 - L1ME2 LINE L1 -1277 4803 4604 7748 62 143 4 chrX 158596204 158597276 -4002654 + MER11B LTR ERVK 2 1222 -14 3224 250 93 38 chrX 158597314 158597678 -4002252 - L1ME2 LINE L1 -1469 4611 4269 1606 17 0 0 chrX 158597678 158597851 -4002079 - L1PA3 LINE L1 -4 6151 5979 3224 250 93 38 chrX 158597851 158597891 -4002039 - L1ME2 LINE L1 -1811 4269 4233 306 0 0 0 chrX 158597891 158597925 -4002005 + (TG)n Simple_repeat Simple_repeat 2 35 0 3224 250 93 38 chrX 158597925 158598907 -4001023 - L1ME2 LINE L1 -1847 4233 3147 598 268 200 4 chrX 158598909 158599144 -4000786 + L1 LINE L1 492 772 -6437 5901 201 22 31 chrX 158599257 158600670 -3999260 + L1 LINE L1 3623 5022 -2186 41233 71 6 33 chrX 158600670 158606965 -3992965 + L1MA4A LINE L1 3 6123 -180 507 146 11 0 chrX 158606969 158607058 -3992872 + L1MA4A LINE L1 6191 6280 -23 22 56 0 0 chrX 158607058 158607094 -3992836 + AT_rich Low_complexity Low_complexity 1 36 0 953 188 92 18 chrX 158607101 158607319 -3992611 - MER46A DNA MER2_type -1 235 2 390 187 216 36 chrX 158607198 158607337 -3992593 + MER46A DNA MER2_type 4 167 -69 * 700 244 71 23 chrX 158607339 158607692 -3992238 - L1ME2 LINE L1 -5190 880 511 2280 279 112 4 chrX 158608028 158608788 -3991142 - L2 LINE L2 -602 2712 1871 249 33 0 0 chrX 158608788 158608818 -3991112 + (GA)n Simple_repeat Simple_repeat 1 30 0 649 314 27 18 chrX 158608822 158609045 -3990885 - L2 LINE L2 -1748 1566 1342 24 0 0 0 chrX 158609718 158609742 -3990188 + AT_rich Low_complexity Low_complexity 1 24 0 424 235 230 9 chrX 158609747 158609960 -3989970 - L1ME4a LINE L1 -3 6118 5859 231 259 37 0 chrX 158610211 158610265 -3989665 - MIR3 SINE MIR -48 160 105 604 269 56 35 chrX 158611039 158611236 -3988694 - MIR SINE MIR -11 251 51 257 253 11 11 chrX 158611248 158611335 -3988595 - Charlie7 DNA MER1_type 0 2612 2526 1188 225 90 12 chrX 158611387 158611721 -3988209 - Charlie7 DNA MER1_type -1894 718 359 861 218 44 0 chrX 158611730 158611991 -3987939 - L1MB7 LINE L1 -704 5480 5209 3784 182 21 9 chrX 158611994 158612664 -3987266 + L1MB7 LINE L1 5499 6176 -8 273 311 80 48 chrX 158612677 158612966 -3986964 - Charlie7 DNA MER1_type -2267 345 48 1586 345 45 61 chrX 158613077 158613521 -3986409 - L2 LINE L2 -1670 1644 1194 1045 42 14 7 chrX 158613521 158613664 -3986266 + (TTTC)n Simple_repeat Simple_repeat 3 146 0 2101 118 14 0 chrX 158613667 158613954 -3985976 - AluSq SINE Alu -22 291 1 1586 345 45 61 chrX 158613954 158614807 -3985123 - L2 LINE L2 -2122 1192 364 223 317 24 12 chrX 158615030 158615112 -3984818 - MIR SINE MIR -59 149 67 1863 237 77 86 chrX 158615426 158615685 -3984245 + MLT1H1 LTR MaLR 1 261 -294 2321 97 3 3 chrX 158615685 158615994 -3983936 + AluSx SINE Alu 1 309 -3 1863 237 77 86 chrX 158615994 158616328 -3983602 + MLT1H1 LTR MaLR 261 554 -1 268 374 59 37 chrX 158616367 158616691 -3983239 + L2 LINE L2 2832 3162 -110 3018 133 2 21 chrX 158617058 158617584 -3982346 - L1MA5 LINE L1 0 6300 5785 183 205 0 0 chrX 158617589 158617628 -3982302 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 682 94 8 43 chrX 158617631 158617748 -3982182 - L1MA5 LINE L1 -500 5791 5679 1616 180 43 15 chrX 158618048 158618376 -3981554 + MER1B DNA MER1_type 1 337 0 344 254 181 7 chrX 158620269 158620407 -3979523 - MER5A DNA MER1_type -2 187 26 278 134 0 45 chrX 158620596 158620663 -3979267 + L1PB2 LINE L1 6085 6145 -6 25 65 0 0 chrX 158621032 158621078 -3978852 + AT_rich Low_complexity Low_complexity 1 46 0 448 251 96 58 chrX 158621416 158621707 -3978223 + L2 LINE L2 2622 2923 -391 2052 71 14 20 chrX 158621721 158622016 -3977914 + L1PA13 LINE L1 5870 6162 -1 2142 98 23 13 chrX 158622017 158622324 -3977606 + AluSg SINE Alu 1 310 0 1684 199 30 33 chrX 158622565 158622931 -3976999 + MLT1A1 LTR MaLR 1 365 0 439 257 124 14 chrX 158623558 158623768 -3976162 + L2 LINE L2 2444 2676 -638 23 0 0 0 chrX 158624736 158624759 -3975171 + AT_rich Low_complexity Low_complexity 1 23 0 1985 119 3 22 chrX 158625070 158625422 -3974508 - MER4A LTR ERV1 0 664 261 651 104 21 0 chrX 158625422 158625518 -3974412 - MER4A LTR ERV1 -566 98 1 16124 108 49 26 chrX 158625519 158627309 -3972621 - MER4A-int LTR ERV1 0 6598 4724 13624 49 14 13 chrX 158627309 158629881 -3970049 - L1PA3 LINE L1 -3 6152 3577 16124 108 49 26 chrX 158629881 158630790 -3969140 - MER4A-int LTR ERV1 -1874 4724 3837 8753 122 160 113 chrX 158630784 158633352 -3966578 - MER4A-int LTR ERV1 -2912 3686 996 * 240 156 0 44 chrX 158633375 158633420 -3966510 - LTR49 LTR ERV1 -282 313 271 279 0 0 0 chrX 158633497 158633528 -3966402 + (TG)n Simple_repeat Simple_repeat 1 31 0 3489 112 138 18 chrX 158633528 158634189 -3965741 - MER4A-int LTR ERV1 -5792 806 1 1825 133 6 27 chrX 158634192 158634545 -3965385 - MER4A LTR ERV1 0 664 261 315 212 153 0 chrX 158634545 158634630 -3965300 - MER4A LTR ERV1 -566 98 1 336 328 142 13 chrX 158634655 158634966 -3964964 + L1MEd LINE L1 527 877 -5242 812 273 80 46 chrX 158635002 158635591 -3964339 + L1MEd LINE L1 971 1579 -4731 546 277 115 3 chrX 158635781 158636156 -3963774 + L1MEd LINE L1 2119 2535 -3594 259 316 11 105 chrX 158636244 158636510 -3963420 + MERVL LTR ERVL 4706 4946 -539 3650 61 0 2 chrX 158637431 158637890 -3962040 - L1PA7 LINE L1 -4 6150 5693 1461 144 119 7 chrX 158638160 158638291 -3961639 - MER65A LTR ERV1 -2 443 328 186 71 0 0 chrX 158638291 158638319 -3961611 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1461 144 119 7 chrX 158638319 158638472 -3961458 - MER65A LTR ERV1 -117 328 127 793 346 67 65 chrX 158638512 158638525 -3961405 - MER65-int LTR ERV1 -2413 2458 2447 866 378 72 38 chrX 158638525 158639052 -3960878 - LTR57-int LTR ERVL -3806 1537 993 793 346 67 65 chrX 158639052 158639110 -3960820 - MER65-int LTR ERV1 -2424 2447 1860 3491 229 107 62 chrX 158640138 158640880 -3959050 - MER65-int LTR ERV1 -2996 1875 1168 1777 66 0 0 chrX 158640880 158641106 -3958824 + L1PA7 LINE L1 5918 6143 -11 3491 229 107 62 chrX 158641106 158641292 -3958638 - MER65-int LTR ERV1 -3703 1168 992 1412 169 0 15 chrX 158641292 158641565 -3958365 + L1MA4A LINE L1 6029 6297 -6 3491 229 107 62 chrX 158641565 158642274 -3957656 - MER65-int LTR ERV1 -3879 992 163 2066 85 0 4 chrX 158642274 158642546 -3957384 + AluSg SINE Alu 1 271 -39 348 43 0 0 chrX 158642546 158642592 -3957338 + (TC)n Simple_repeat Simple_repeat 2 47 0 436 107 30 48 chrX 158642593 158642761 -3957169 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 341 254 95 24 chrX 158642915 158643041 -3956889 + L1MEd LINE L1 969 1103 -5016 1842 228 76 11 chrX 158643112 158643586 -3956344 - MLT1D LTR MaLR 0 505 1 213 370 0 0 chrX 158644236 158644309 -3955621 - MIR3 SINE MIR -25 183 111 9163 221 29 3 chrX 158644349 158644362 -3955568 - L1P4 LINE L1 -671 5495 5484 2593 148 28 0 chrX 158644362 158644796 -3955134 - L1PA16 LINE L1 0 6166 5721 9163 221 29 3 chrX 158644796 158647106 -3952824 - L1P4 LINE L1 -682 5484 3108 311 287 99 44 chrX 158647247 158647428 -3952502 + L1MEc LINE L1 790 980 -5416 236 301 42 7 chrX 158647430 158647573 -3952357 + L1MB5 LINE L1 1755 1902 -4751 4386 221 25 18 chrX 158647582 158649092 -3950838 + L1MB5 LINE L1 4667 6186 -574 5386 123 1 11 chrX 158649499 158650330 -3949600 - L1PA13 LINE L1 -4 6159 5337 * 5588 89 23 24 chrX 158650327 158650449 -3949481 + L1PA11 LINE L1 5347 5468 -706 2019 152 0 0 chrX 158650449 158650746 -3949184 - AluSx SINE Alu -15 297 1 5588 89 23 24 chrX 158650746 158651452 -3948478 + L1PA11 LINE L1 5468 6174 0 237 88 0 0 chrX 158651448 158651482 -3948448 - L1PA13 LINE L1 -813 5350 5317 * 6215 29 1 0 chrX 158651494 158652226 -3947704 - L1PA4 LINE L1 -8 6147 5415 13800 32 0 1 chrX 158652227 158653893 -3946037 + L1PA4 LINE L1 3730 5394 -752 4446 172 14 0 chrX 158653889 158654720 -3945210 - L1PA4 LINE L1 -812 5334 4492 * 2248 218 77 4 chrX 158654721 158655230 -3944700 + L1MB5 LINE L1 6178 6723 -37 456 303 84 21 chrX 158655252 158655536 -3944394 + L1ME3A LINE L1 3546 3847 -2299 1322 258 54 53 chrX 158655684 158656767 -3943163 + L1ME3A LINE L1 4483 5558 -608 962 231 34 0 chrX 158656783 158657017 -3942913 - L1ME1 LINE L1 -6 6955 6714 2309 99 0 3 chrX 158657063 158657365 -3942565 - AluSg SINE Alu -9 301 1 4389 242 35 20 chrX 158657653 158659689 -3940241 - L1ME1 LINE L1 -235 6726 4666 351 284 20 20 chrX 158659692 158659840 -3940090 - L1ME1 LINE L1 -2670 4271 4124 * 1177 223 83 9 chrX 158659834 158660171 -3939759 - L1MB8 LINE L1 -2 6176 5815 300 256 128 26 chrX 158660152 158660418 -3939512 - L1ME1 LINE L1 -2794 4147 3855 * 1220 322 44 37 chrX 158660415 158661294 -3938636 - L1ME1 LINE L1 -5477 946 17 1063 229 57 112 chrX 158661279 158661826 -3938104 + L1ME3A LINE L1 5540 6056 -114 * 955 181 51 0 chrX 158661841 158662078 -3937852 - L1MC3 LINE L1 -8 7777 7529 2722 306 78 10 chrX 158662186 158663174 -3936756 + ERVL LTR ERVL 3588 4642 -1122 1400 204 82 22 chrX 158663255 158663623 -3936307 - MLT1B LTR MaLR 0 390 1 1043 258 28 47 chrX 158663648 158663850 -3936080 + ERVL LTR ERVL 4944 5137 -627 2175 158 9 6 chrX 158663850 158664197 -3935733 + MER7A DNA MER2_type 1 346 0 1043 258 28 47 chrX 158664197 158664358 -3935572 + ERVL LTR ERVL 5137 5300 -464 1663 125 0 0 chrX 158664755 158664979 -3934951 - AluSx SINE Alu -88 224 1 397 269 47 27 chrX 158665413 158665562 -3934368 + MIR3 SINE MIR 35 186 -22 806 272 27 51 chrX 158666848 158667105 -3932825 - MIR SINE MIR -10 252 2 936 107 17 4 chrX 158667152 158667294 -3932636 - L1PA13 LINE L1 -230 5933 5786 3862 32 0 0 chrX 158667321 158667753 -3932177 - L1PA3 LINE L1 0 6155 5724 1363 106 19 10 chrX 158667753 158667960 -3931970 + L1PA13 LINE L1 5948 6156 -7 545 213 88 12 chrX 158667964 158668124 -3931806 + MER114 LTR ERV 477 648 0 183 364 61 15 chrX 158668988 158669054 -3930876 + L2 LINE L2 3118 3186 -86 514 307 55 17 chrX 158670302 158670647 -3929283 + L1M4 LINE L1 2635 2992 -3154 518 266 13 0 chrX 158670649 158670667 -3929263 - L1MA10 LINE L1 0 6334 6317 461 271 23 70 chrX 158670667 158670925 -3929005 - L1ME1 LINE L1 -10 6967 6722 448 137 0 41 chrX 158670926 158670999 -3928931 + MER81 DNA DNA 1 70 -44 2968 241 56 15 chrX 158670999 158672096 -3927834 - L1ME1 LINE L1 -757 6200 5127 4528 235 43 26 chrX 158672104 158673563 -3926367 - L1ME1 LINE L1 -1974 4983 3500 3612 247 33 9 chrX 158673577 158674624 -3925306 + L1M4 LINE L1 4022 5094 -1052 354 258 12 8 chrX 158674615 158674738 -3925192 + L1ME1 LINE L1 6051 6334 0 * 316 281 123 23 chrX 158674771 158674942 -3924988 + L1M4 LINE L1 4778 4965 -1181 6318 165 36 21 chrX 158675047 158675798 -3924132 - L1 LINE L1 -1133 5013 4275 216 0 0 0 chrX 158675798 158675822 -3924108 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6318 165 36 21 chrX 158675822 158675864 -3924066 - L1 LINE L1 -1871 4275 4235 3074 40 0 0 chrX 158675864 158676205 -3923725 + L1PA3 LINE L1 5809 6154 -1 6318 165 36 21 chrX 158676205 158676633 -3923297 - L1 LINE L1 -1911 4235 3773 459 115 0 82 chrX 158676671 158676684 -3923246 + (TA)n Simple_repeat Simple_repeat 1 13 -155 225 0 0 0 chrX 158676684 158676709 -3923221 + (CA)n Simple_repeat Simple_repeat 2 26 0 459 115 0 82 chrX 158676709 158676878 -3923052 + (TA)n Simple_repeat Simple_repeat 13 168 0 680 104 0 67 chrX 158676897 158677090 -3922840 + (TA)n Simple_repeat Simple_repeat 1 180 0 538 219 0 18 chrX 158682460 158682574 -3917356 + MER93a LTR ERV1 291 402 0 1430 236 71 3 chrX 158682581 158682907 -3917023 - L1ME1 LINE L1 -6511 348 1 194 79 0 26 chrX 158682959 158682997 -3916933 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1339 170 77 109 chrX 158683004 158683381 -3916549 + MLT1A1 LTR MaLR 1 365 0 21 59 0 44 chrX 158683697 158683765 -3916165 + AT_rich Low_complexity Low_complexity 1 65 0 597 295 26 15 chrX 158683866 158684137 -3915793 - HAL1b LINE L1 -767 1664 310 990 296 48 25 chrX 158684148 158684546 -3915384 + MLT1I LTR MaLR 3 409 0 207 167 0 0 chrX 158684576 158684618 -3915312 + (TAA)n Simple_repeat Simple_repeat 3 44 0 2184 92 7 46 chrX 158685142 158685448 -3914482 - AluSx SINE Alu -18 294 1 700 283 63 0 chrX 158686276 158686481 -3913449 + MLT1I LTR MaLR 4 221 -188 418 269 0 0 chrX 158686511 158686615 -3913315 + MER5B DNA MER1_type 27 130 -48 524 238 20 79 chrX 158686630 158686752 -3913178 - L1ME3 LINE L1 -1 6161 6054 1117 209 67 0 chrX 158686752 158686962 -3912968 - MER58A DNA MER1_type 0 224 1 524 238 20 79 chrX 158686962 158687041 -3912889 - L1ME3 LINE L1 -108 6054 5972 201 220 51 34 chrX 158687046 158687105 -3912825 + MER5B DNA MER1_type 119 178 0 2884 7 0 0 chrX 158687633 158687941 -3911989 - AluYa5 SINE Alu -3 308 1 604 270 58 36 chrX 158688328 158688534 -3911396 - MLT1L LTR MaLR 0 615 384 458 202 20 0 chrX 158688960 158689059 -3910871 + MIR SINE MIR 85 185 -77 340 256 77 26 chrX 158689057 158689174 -3910756 - L2 LINE L2 -1 3312 3190 * 330 250 208 8 chrX 158689345 158689465 -3910465 + MER5A DNA MER1_type 25 168 -21 630 313 93 68 chrX 158690792 158691545 -3908385 + L2 LINE L2 2205 2976 -338 180 296 0 0 chrX 158693567 158693611 -3906319 + L2 LINE L2 3224 3267 -46 1570 201 66 118 chrX 158693815 158694348 -3905582 - MLT1D LTR MaLR 0 505 1 192 77 0 0 chrX 158694459 158694485 -3905445 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 989 308 45 100 chrX 158694512 158696282 -3903648 + L2 LINE L2 1605 3272 0 204 283 0 0 chrX 158696364 158696410 -3903520 + L2 LINE L2 3209 3254 -18 273 220 0 17 chrX 158696545 158696604 -3903326 - L2 LINE L2 0 3272 3215 359 301 10 0 chrX 158697109 158697212 -3902718 - MIR3 SINE MIR -6 202 99 2165 114 91 24 chrX 158697260 158697601 -3902329 + THE1B LTR MaLR 1 364 0 410 253 134 38 chrX 158697621 158697807 -3902123 - MIR SINE MIR -46 216 13 319 353 113 7 chrX 158698987 158699137 -3900793 + L2 LINE L2 2891 3056 -216 269 344 95 50 chrX 158699156 158699418 -3900512 - L2 LINE L2 -68 3204 2931 583 317 198 22 chrX 158699450 158699955 -3899975 - L2 LINE L2 -431 2883 2290 207 100 0 0 chrX 158699992 158700022 -3899908 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 716 162 18 0 chrX 158700026 158700137 -3899793 - FRAM SINE Alu -31 145 33 621 267 146 31 chrX 158700208 158700496 -3899434 + MLT1G LTR MaLR 132 452 -138 427 214 250 11 chrX 158700592 158700750 -3899180 + MLT1G LTR MaLR 375 530 0 643 301 98 13 chrX 158700771 158701150 -3898780 - L2 LINE L2 -1099 2215 1805 203 250 60 48 chrX 158701150 158701234 -3898696 - L2 LINE L2 -1758 1556 1472 202 238 75 38 chrX 158701643 158701723 -3898207 - L2 LINE L2 -1523 1791 1709 21 0 0 0 chrX 158702843 158702864 -3897066 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrX 158703172 158703200 -3896730 + AT_rich Low_complexity Low_complexity 1 28 0 516 217 125 0 chrX 158704597 158704717 -3895213 + MIR SINE MIR 58 192 -70 336 202 0 43 chrX 158704786 158704889 -3895041 - MIR SINE MIR -61 147 96 369 293 119 66 chrX 158705832 158706146 -3893784 - L2 LINE L2 -16 3256 2912 1587 189 7 13 chrX 158706146 158706447 -3893483 - AluJo SINE Alu -13 299 1 369 293 119 66 chrX 158706447 158706576 -3893354 - L2 LINE L2 -360 2912 2791 185 91 0 30 chrX 158706957 158706990 -3892940 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 200 299 60 15 chrX 158707421 158707488 -3892442 + L2 LINE L2 3203 3272 0 4543 151 40 21 chrX 158707930 158708783 -3891147 + L1MB2 LINE L1 5282 6150 -21 306 73 0 0 chrX 158708783 158708824 -3891106 + (CA)n Simple_repeat Simple_repeat 2 42 0 1923 87 6 80 chrX 158709289 158709601 -3890329 - AluSp SINE Alu -24 289 1 239 0 0 31 chrX 158709602 158709634 -3890296 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8195 21 0 0 chrX 158709634 158710941 -3888989 - L1PA4 LINE L1 -13 6142 4836 1569 286 62 87 chrX 158711215 158711614 -3888316 - L2 LINE L2 -2 3311 2904 2100 124 0 0 chrX 158711614 158711942 -3887988 + AluY SINE Alu 1 328 0 1569 286 62 87 chrX 158711942 158712869 -3887061 - L2 LINE L2 -409 2904 2007 242 371 119 7 chrX 158712906 158713216 -3886714 - L2 LINE L2 -2801 513 169 210 109 0 43 chrX 158713398 158713444 -3886486 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 336 83 0 0 chrX 158714069 158714117 -3885813 + (TG)n Simple_repeat Simple_repeat 2 49 0 364 293 53 69 chrX 158714556 158714744 -3885186 - HAL1 LINE L1 -11 2496 2312 238 242 0 61 chrX 158714907 158714973 -3884957 - HAL1 LINE L1 -631 1876 1815 5670 155 34 10 chrX 158715000 158715328 -3884602 - L1MA8 LINE L1 -5 6286 5967 2414 51 0 0 chrX 158715328 158715604 -3884326 - AluY SINE Alu -13 298 23 5670 155 34 10 chrX 158715604 158716912 -3883018 - L1MA8 LINE L1 -324 5967 4613 340 266 166 12 chrX 158717017 158717186 -3882744 + L1ME3 LINE L1 5022 5216 -930 2925 210 22 16 chrX 158717825 158718496 -3881434 + L1PA16 LINE L1 4572 5246 -900 4617 103 0 7 chrX 158718496 158719115 -3880815 + L1PA16 LINE L1 5551 6166 0 548 250 60 98 chrX 158719686 158720034 -3879896 + MLT1G-int LTR MaLR 1036 1370 -1 2073 271 62 4 chrX 158720035 158720588 -3879342 + MLT1G LTR MaLR 1 585 -5 2147 253 35 9 chrX 158720599 158721252 -3878678 + L1ME3 LINE L1 5258 5927 -243 313 60 84 12 chrX 158721253 158721336 -3878594 + (TA)n Simple_repeat Simple_repeat 2 90 0 357 274 28 60 chrX 158721336 158721551 -3878379 + L1ME3 LINE L1 5899 6106 -56 240 275 0 29 chrX 158722252 158722321 -3877609 - L2 LINE L2 -1 3312 3246 845 291 73 32 chrX 158722668 158722984 -3876946 - LTR40b LTR ERVL 0 462 134 8118 16 34 15 chrX 158722984 158723968 -3875962 - L1PA4 LINE L1 0 6155 5195 1052 22 29 0 chrX 158723968 158724105 -3875825 + L1P LINE L1 3833 3973 -2173 826 216 21 11 chrX 158724106 158724296 -3875634 - LTR40a LTR ERVL -325 194 3 180 0 0 0 chrX 158724409 158724429 -3875501 + (T)n Simple_repeat Simple_repeat 1 20 0 11543 197 38 19 chrX 158724433 158727094 -3872836 - L1MC3 LINE L1 -8 7777 5066 1229 283 77 27 chrX 158727095 158728253 -3871677 + L1MB7 LINE L1 4733 5947 -237 746 230 36 60 chrX 158728255 158728395 -3871535 + L1ME3A LINE L1 5792 5934 -236 1910 142 19 13 chrX 158728395 158728705 -3871225 + AluJb SINE Alu 1 312 0 746 230 36 60 chrX 158728705 158729180 -3870750 + L1ME3A LINE L1 5934 6165 -5 1132 229 9 103 chrX 158729389 158729816 -3870114 + L1ME3A LINE L1 5551 5937 -233 3374 272 98 40 chrX 158729834 158731739 -3868191 + L1ME4a LINE L1 21 2060 -4881 6698 135 48 11 chrX 158731792 158733980 -3865950 + L1MA3 LINE L1 4030 6300 -5 2255 181 98 14 chrX 158734117 158734608 -3865322 + L1MC3 LINE L1 7246 7777 -8 1570 201 24 3 chrX 158734672 158734965 -3864965 + AluJb SINE Alu 1 299 -13 2950 256 91 65 chrX 158735660 158737571 -3862359 + L1ME4a LINE L1 3452 5313 -1628 2034 125 7 0 chrX 158737571 158737868 -3862062 + AluSx SINE Alu 1 299 -13 2950 256 91 65 chrX 158737868 158737971 -3861959 + L1ME4a LINE L1 5313 5412 -1529 1813 125 46 20 chrX 158737971 158738276 -3861654 - AluSq SINE Alu 0 313 1 2950 256 91 65 chrX 158738276 158738604 -3861326 + L1ME4a LINE L1 5412 5855 -1086 6221 85 6 83 chrX 158738608 158739408 -3860522 - L1PA11 LINE L1 -3 6171 5363 2322 65 0 49 chrX 158739408 158739715 -3860215 - AluY SINE Alu -19 292 1 6221 85 6 83 chrX 158739715 158739946 -3859984 - L1PA11 LINE L1 -811 5363 5116 22 56 0 0 chrX 158740334 158740370 -3859560 + AT_rich Low_complexity Low_complexity 1 36 0 266 311 45 0 chrX 158740648 158740780 -3859150 - L1ME4a LINE L1 -11 6110 5973 3318 241 96 115 chrX 158740903 158742262 -3857668 + L1MEc LINE L1 28 1481 -4915 625 236 21 29 chrX 158742262 158742402 -3857528 + FLAM_C SINE Alu 5 143 0 3318 241 96 115 chrX 158742402 158742889 -3857041 + L1MEc LINE L1 1481 1976 -4420 432 266 0 0 chrX 158744298 158744467 -3855463 + (TA)n Simple_repeat Simple_repeat 2 170 0 213 108 0 0 chrX 158745075 158745112 -3854818 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 274 261 86 102 chrX 158746214 158746716 -3853214 + L1ME4a LINE L1 6344 6837 -79 353 315 175 27 chrX 158746828 158747193 -3852737 - MLT1J2 LTR MaLR -5 445 27 1680 99 21 8 chrX 158747441 158747684 -3852246 - L1PA14 LINE L1 -2 6159 5914 213 329 26 40 chrX 158748696 158748772 -3851158 + MIR SINE MIR 24 98 -164 21 0 0 0 chrX 158749601 158749622 -3850308 + GC_rich Low_complexity Low_complexity 1 21 0 200 290 86 11 chrX 158749799 158749892 -3850038 + L2 LINE L2 3150 3249 -23 327 232 12 12 chrX 158753450 158753532 -3846398 + G-rich Low_complexity Low_complexity 3 84 0 349 239 0 44 chrX 158753959 158754072 -3845858 + G-rich Low_complexity Low_complexity 4 111 0 236 289 22 11 chrX 158754500 158754590 -3845340 + G-rich Low_complexity Low_complexity 4 94 0 265 193 0 23 chrX 158754605 158754693 -3845237 + G-rich Low_complexity Low_complexity 5 90 0 210 216 21 36 chrX 158755143 158755289 -3844641 + G-rich Low_complexity Low_complexity 1 143 0 450 266 38 25 chrX 158755713 158755871 -3844059 + G-rich Low_complexity Low_complexity 3 162 0 221 179 0 60 chrX 158756283 158756350 -3843580 + G-rich Low_complexity Low_complexity 1 63 0 204 40 0 0 chrX 158756372 158756397 -3843533 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 246 256 78 54 chrX 158756880 158757009 -3842921 + MER112 DNA MER1_type 38 169 -91 307 308 97 37 chrX 158757501 158758255 -3841675 - L1M4 LINE L1 -1557 4589 3791 883 272 42 51 chrX 158758684 158759251 -3840679 - L1MC5 LINE L1 -44 7917 7356 * 912 155 14 0 chrX 158759247 158759395 -3840535 - L1MC3 LINE L1 -944 6841 6692 831 251 56 32 chrX 158759387 158759726 -3840204 - L1M4 LINE L1 -1024 5122 4776 * 2564 205 64 9 chrX 158759707 158760503 -3839427 - L1MC3 LINE L1 -756 5390 4922 234 0 0 0 chrX 158760503 158760529 -3839401 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2564 205 64 9 chrX 158760529 158760678 -3839252 - L1MC3 LINE L1 -1224 4922 4783 549 271 12 24 chrX 158760682 158760852 -3839078 + MLT1A2 LTR MaLR 13 180 -194 713 192 0 6 chrX 158760865 158761021 -3838909 + CT-rich Low_complexity Low_complexity 2 156 0 601 232 85 13 chrX 158761025 158761216 -3838714 + MLT1A2 LTR MaLR 187 374 0 377 185 93 9 chrX 158761216 158761324 -3838606 - L1M4 LINE L1 -1067 5079 4963 1877 172 39 3 chrX 158761326 158761663 -3838267 + MLT2C1 LTR ERVL 1 349 -48 2178 259 63 21 chrX 158761692 158762512 -3837418 - L1M4 LINE L1 -1181 4965 4111 414 0 0 0 chrX 158764090 158764136 -3835794 + (TG)n Simple_repeat Simple_repeat 2 47 0 207 258 0 16 chrX 158764139 158764201 -3835729 + GA-rich Low_complexity Low_complexity 4 64 0 1363 248 25 44 chrX 158764204 158764679 -3835251 - L1M4 LINE L1 -3026 3120 2655 243 0 0 0 chrX 158764679 158764706 -3835224 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 436 311 0 0 chrX 158764774 158764896 -3835034 - L1ME1 LINE L1 -54 6112 5991 231 36 0 0 chrX 158765260 158765288 -3834642 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 7838 72 5 1 chrX 158765510 158766475 -3833455 + LTR5 LTR ERVK 1 969 0 399 314 65 45 chrX 158767996 158768241 -3831689 + MIR SINE MIR 13 262 0 183 265 0 0 chrX 158769136 158769185 -3830745 + L2 LINE L2 3221 3269 -3 2232 119 6 3 chrX 158769541 158769852 -3830078 + AluSx SINE Alu 1 312 0 186 71 0 0 chrX 158770004 158770032 -3829898 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 1340 178 60 0 chrX 158770039 158770368 -3829562 - L1MA6 LINE L1 -23 6277 5897 255 125 0 0 chrX 158771325 158771365 -3828565 + (GGA)n Simple_repeat Simple_repeat 3 42 0 183 139 0 0 chrX 158773310 158773346 -3826584 + (G)n Simple_repeat Simple_repeat 1 36 0 339 202 25 0 chrX 158774537 158774656 -3825274 + G-rich Low_complexity Low_complexity 3 124 0 183 114 0 0 chrX 158774673 158774708 -3825222 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 193 305 34 0 chrX 158775558 158775617 -3824313 + MIR SINE MIR 14 74 -188 441 280 47 43 chrX 158775968 158776200 -3823730 - L1M4 LINE L1 -1557 4589 4357 490 299 83 30 chrX 158776344 158776982 -3822948 - L1M4 LINE L1 -1953 4193 3519 895 258 29 48 chrX 158777112 158777670 -3822260 - L1MC5 LINE L1 -44 7917 7371 310 93 0 0 chrX 158777674 158777717 -3822213 - L1MC3 LINE L1 -939 7657 7615 1421 171 48 79 chrX 158777718 158777766 -3822164 + MER2 DNA MER2_type 1 49 -296 370 71 18 0 chrX 158777766 158777822 -3822108 + L1MA2 LINE L1 6241 6297 -7 1421 171 48 79 chrX 158777822 158778129 -3821801 + MER2 DNA MER2_type 49 345 0 5710 210 68 50 chrX 158778129 158781791 -3818139 - L1MC3 LINE L1 -743 6214 3892 1792 139 0 4 chrX 158781795 158782076 -3817854 - L1M1 LINE L1 -5530 2035 1756 369 93 0 0 chrX 158782076 158782130 -3817800 + (TC)n Simple_repeat Simple_repeat 2 55 0 282 253 24 24 chrX 158782149 158782232 -3817698 - L1MC3 LINE L1 -6424 435 353 1021 279 13 16 chrX 158782322 158782634 -3817296 + MER93a LTR ERV1 92 402 0 1303 235 71 3 chrX 158782641 158782965 -3816965 - L1MC3 LINE L1 -6511 348 3 194 79 0 26 chrX 158783019 158783057 -3816873 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1185 170 77 109 chrX 158783064 158783441 -3816489 + MLT1A1 LTR MaLR 1 365 0 21 59 0 44 chrX 158783757 158783825 -3816105 + AT_rich Low_complexity Low_complexity 1 65 0 508 295 26 15 chrX 158783926 158784197 -3815733 - HAL1b LINE L1 -767 1664 310 841 296 48 25 chrX 158784208 158784606 -3815324 + MLT1I LTR MaLR 3 409 0 207 167 0 0 chrX 158784636 158784678 -3815252 + (TAA)n Simple_repeat Simple_repeat 3 44 0 2086 98 10 46 chrX 158785202 158785507 -3814423 - AluSx SINE Alu -18 294 1 627 283 63 0 chrX 158786335 158786540 -3813390 + MLT1I LTR MaLR 4 221 -188 432 269 0 0 chrX 158786570 158786674 -3813256 + MER5B DNA MER1_type 27 130 -48 441 232 16 84 chrX 158786699 158786811 -3813119 - L1ME3 LINE L1 -12 6150 6055 1025 209 67 0 chrX 158786811 158787021 -3812909 - MER58A DNA MER1_type 0 224 1 441 232 16 84 chrX 158787021 158787098 -3812832 - L1ME3 LINE L1 -107 6055 5974 205 220 51 34 chrX 158787105 158787164 -3812766 + MER5B DNA MER1_type 119 178 0 2802 7 3 0 chrX 158787692 158787999 -3811931 - AluYa5 SINE Alu -3 308 1 538 259 34 17 chrX 158788399 158788592 -3811338 - MLT1L LTR MaLR -13 602 384 463 202 20 0 chrX 158789018 158789117 -3810813 + MIR SINE MIR 85 185 -77 347 256 77 26 chrX 158789115 158789232 -3810698 - L2 LINE L2 -1 3312 3190 * 324 250 208 8 chrX 158789403 158789523 -3810407 + MER5A DNA MER1_type 25 168 -21 241 49 0 99 chrX 158790575 158790656 -3809274 + (TA)n Simple_repeat Simple_repeat 2 74 0 4056 191 27 14 chrX 158790666 158791693 -3808237 - L1 LINE L1 -2352 3794 2754 362 292 83 66 chrX 158791695 158792287 -3807643 - HAL1 LINE L1 -1287 1220 619 259 276 124 9 chrX 158792496 158792601 -3807329 - HAL1 LINE L1 -2369 138 22 242 354 10 10 chrX 158793356 158793455 -3806475 - L3 LINE CR1 -467 1110 1012 468 284 56 111 chrX 158793655 158793943 -3805987 - L3 LINE CR1 -730 847 580 1698 131 62 4 chrX 158793943 158794243 -3805687 - AluSx SINE Alu 0 323 9 468 284 56 111 chrX 158794243 158794312 -3805618 - L3 LINE CR1 -997 580 509 227 238 0 0 chrX 158794323 158794365 -3805565 + polypyrimidine Low_complexity Low_complexity 1 42 0 1322 215 8 4 chrX 158794365 158794625 -3805305 - AluJb SINE Alu -4 308 48 280 301 183 44 chrX 158794635 158794864 -3805066 - L3 LINE CR1 -1070 507 247 207 217 0 0 chrX 158795264 158795324 -3804606 + (CA)n Simple_repeat Simple_repeat 2 61 0 467 294 98 19 chrX 158795646 158795799 -3804131 + HAL1b LINE L1 460 600 -748 1189 119 0 36 chrX 158795799 158795992 -3803938 + L1PA13 LINE L1 5959 6144 -19 467 294 98 19 chrX 158795992 158796206 -3803724 + HAL1b LINE L1 600 856 -492 303 292 67 51 chrX 158796336 158796531 -3803399 + HAL1b LINE L1 793 990 -358 192 407 17 17 chrX 158796531 158796649 -3803281 - L3 LINE CR1 -1429 148 31 532 358 81 30 chrX 158796761 158797093 -3802837 - L2 LINE L2 -8 3264 2916 29 0 0 0 chrX 158797805 158797834 -3802096 + AT_rich Low_complexity Low_complexity 1 29 0 740 318 112 61 chrX 158797929 158798580 -3801350 - L3 LINE CR1 -99 1478 795 560 342 4 44 chrX 158798635 158798907 -3801023 + MIR SINE MIR 1 261 -1 235 243 51 18 chrX 158799052 158799158 -3800772 + MIR SINE MIR 24 140 -68 32 0 0 0 chrX 158800263 158800295 -3799635 + AT_rich Low_complexity Low_complexity 1 32 0 383 281 95 61 chrX 158800425 158800720 -3799210 + L2 LINE L2 83 387 -2927 1821 237 34 10 chrX 158800930 158801433 -3798497 - L1ME1 LINE L1 -152 6014 5500 21 0 0 0 chrX 158801440 158801461 -3798469 + AT_rich Low_complexity Low_complexity 1 21 0 2226 104 3 0 chrX 158801466 158801765 -3798165 + AluSg SINE Alu 1 300 -10 1158 211 27 40 chrX 158801928 158802442 -3797488 - L1ME1 LINE L1 -743 5403 4983 1611 166 39 55 chrX 158802501 158802809 -3797121 - AluJo SINE Alu -9 303 1 410 295 110 58 chrX 158802925 158803139 -3796791 - L1MEd LINE L1 -5591 528 327 1803 212 37 45 chrX 158803139 158803648 -3796282 - MLT1D LTR MaLR 0 505 1 410 295 110 58 chrX 158803648 158803850 -3796080 - L1MEd LINE L1 -5792 327 90 2306 86 0 40 chrX 158803852 158804178 -3795752 + AluSq SINE Alu 1 313 0 227 31 31 0 chrX 158804178 158804210 -3795720 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 298 247 12 0 chrX 158804216 158804301 -3795629 - L1MEd LINE L1 -6018 101 16 619 312 25 35 chrX 158804314 158804596 -3795334 + L2 LINE L2 1833 2111 -1203 185 206 63 79 chrX 158805074 158805137 -3794793 + L2 LINE L2 1542 1603 -1711 25 0 0 0 chrX 158805794 158805819 -3794111 + AT_rich Low_complexity Low_complexity 1 25 0 1136 214 21 8 chrX 158805828 158806066 -3793864 - MIR SINE MIR -21 241 1 358 242 45 38 chrX 158806142 158806274 -3793656 - MIR SINE MIR 0 262 130 * 1057 256 78 11 chrX 158806242 158806590 -3793340 + L2 LINE L2 1891 2261 -1053 1896 189 40 33 chrX 158806595 158806830 -3793100 + MLT1C LTR MaLR 1 242 -225 2417 73 3 13 chrX 158806830 158807143 -3792787 + AluY SINE Alu 1 310 -1 1896 189 40 33 chrX 158807143 158807361 -3792569 + MLT1C LTR MaLR 242 457 -10 1449 262 44 68 chrX 158807362 158808004 -3791926 + L2 LINE L2 2260 2885 -429 256 271 9 37 chrX 158808229 158808336 -3791594 + CT-rich Low_complexity Low_complexity 1 104 0 26 64 0 0 chrX 158808462 158808509 -3791421 + AT_rich Low_complexity Low_complexity 1 47 0 364 311 43 55 chrX 158810613 158810777 -3789153 + HAL1 LINE L1 16 177 -2330 1853 226 58 14 chrX 158811234 158811717 -3788213 - MLT1D LTR MaLR -1 504 1 290 206 87 22 chrX 158811919 158812011 -3787919 + HAL1 LINE L1 2267 2364 -143 298 160 13 13 chrX 158812072 158812147 -3787783 + CT-rich Low_complexity Low_complexity 2 76 0 886 263 37 12 chrX 158812178 158812421 -3787509 + MIR SINE MIR 12 260 -2 2379 165 15 38 chrX 158812490 158812968 -3786962 - MLT1C LTR MaLR 0 467 1 360 323 70 11 chrX 158812968 158813253 -3786677 + L1ME4a LINE L1 5490 5791 -330 303 303 61 68 chrX 158813485 158813749 -3786181 + L1ME4a LINE L1 5837 6098 -23 351 261 156 89 chrX 158814290 158814650 -3785280 + L1M2 LINE L1 840 1223 -5626 388 322 37 42 chrX 158814663 158814877 -3785053 + L2 LINE L2 2855 3067 -205 612 277 127 5 chrX 158815514 158815734 -3784196 + MIR SINE MIR 11 257 -5 276 30 0 0 chrX 158816034 158816067 -3783863 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1882 206 31 12 chrX 158816279 158816697 -3783233 + MSTB LTR MaLR 1 426 0 2230 282 95 44 chrX 158817206 158818496 -3781434 - Charlie8 DNA MER1_type -1078 1339 1 185 276 133 57 chrX 158819332 158819437 -3780493 - L2 LINE L2 -23 3249 3137 1834 170 3 6 chrX 158819756 158820067 -3779863 + AluJo SINE Alu 3 312 0 5860 93 6 1 chrX 158821975 158822762 -3777168 + LTR5 LTR ERVK 179 969 0 271 326 23 39 chrX 158823089 158823218 -3776712 - MIR SINE MIR -123 139 13 366 267 10 72 chrX 158824568 158824763 -3775167 + AluJo SINE Alu 120 302 0 235 311 59 42 chrX 158824946 158825065 -3774865 - L2 LINE L2 -580 2734 2614 690 297 110 20 chrX 158825726 158826026 -3773904 - L2 LINE L2 -44 3269 2943 5338 139 26 91 chrX 158826253 158826375 -3773555 - L1 LINE L1 -1216 4930 4802 2721 130 22 45 chrX 158826375 158826868 -3773062 - L1PB4 LINE L1 0 6156 5675 5338 139 26 91 chrX 158826868 158827958 -3771972 - L1 LINE L1 -1344 4802 3796 5244 167 26 21 chrX 158827957 158828839 -3771091 + L1MA6 LINE L1 4898 5783 -517 * 477 0 0 0 chrX 158828839 158828892 -3771038 + (CA)n Simple_repeat Simple_repeat 2 54 0 5244 167 26 21 chrX 158828892 158829413 -3770517 + L1MA6 LINE L1 5783 6300 0 4971 236 22 28 chrX 158829632 158831166 -3768764 - L1M4 LINE L1 -2230 4414 2890 826 252 120 0 chrX 158831144 158831378 -3768552 - L1M4 LINE L1 -6265 277 16 * 904 274 53 20 chrX 158831450 158831749 -3768181 + L2 LINE L2 1981 2289 -1025 1831 238 46 63 chrX 158831753 158831826 -3768104 - L1ME3A LINE L1 -129 5975 5902 2377 199 67 100 chrX 158831826 158832679 -3767251 - MER99 DNA DNA -1 827 3 1831 238 46 63 chrX 158832679 158833256 -3766674 - L1ME3A LINE L1 -202 5902 5336 360 155 0 0 chrX 158833267 158833338 -3766592 + (TG)n Simple_repeat Simple_repeat 2 72 0 618 275 38 48 chrX 158833364 158833760 -3766170 - L1ME3A LINE L1 -798 5282 4891 282 73 0 0 chrX 158833768 158833809 -3766121 + (TC)n Simple_repeat Simple_repeat 2 42 0 362 240 20 87 chrX 158833809 158834005 -3765925 - L1ME3A LINE L1 -1329 4751 4569 3734 77 16 2 chrX 158834164 158834674 -3765256 - L1PA12 LINE L1 0 6168 5652 228 277 77 51 chrX 158834769 158835004 -3764926 - L1ME3A LINE L1 -5144 926 686 754 313 69 69 chrX 158835754 158836471 -3763459 + L2 LINE L2 2606 3311 -2 605 49 12 0 chrX 158837826 158837907 -3762023 + (CA)n Simple_repeat Simple_repeat 2 83 0 22 0 0 0 chrX 158838127 158838149 -3761781 + AT_rich Low_complexity Low_complexity 1 22 0 7696 22 1 0 chrX 158838842 158839991 -3759939 + L1PA3 LINE L1 5002 6151 -4 24 64 0 39 chrX 158839991 158840069 -3759861 + AT_rich Low_complexity Low_complexity 1 75 0 232 299 67 75 chrX 158840155 158840289 -3759641 - MIR SINE MIR -66 196 64 26 30 0 0 chrX 158841421 158841454 -3758476 + AT_rich Low_complexity Low_complexity 1 33 0 1066 283 27 9 chrX 158841889 158842327 -3757603 - L2 LINE L2 -229 3084 2636 874 194 68 68 chrX 158842343 158842539 -3757391 + L1ME1 LINE L1 3943 4141 -2005 1031 127 17 6 chrX 158842539 158842712 -3757218 + L1MB7 LINE L1 5999 6173 -11 874 194 68 68 chrX 158842712 158842794 -3757136 + L1ME1 LINE L1 4140 4221 -1925 2927 230 46 9 chrX 158842804 158843586 -3756344 + L1ME1 LINE L1 4516 5326 -820 303 175 0 0 chrX 158843591 158843648 -3756282 + (TA)n Simple_repeat Simple_repeat 2 58 0 272 278 0 0 chrX 158843648 158843738 -3756192 - L1MC4 LINE L1 -1339 6703 6614 246 206 0 118 chrX 158843700 158843802 -3756128 + L1MC4 LINE L1 6614 6703 -1339 * 2898 204 62 35 chrX 158843823 158844611 -3755319 + L1ME1 LINE L1 5349 6157 -9 203 133 0 0 chrX 158844645 158844675 -3755255 + MIR SINE MIR 5 34 -228 4374 136 67 10 chrX 158844723 158845823 -3754107 - L1PB4 LINE L1 -10 6146 5089 7133 29 1 0 chrX 158845823 158846657 -3753273 + L1PA3 LINE L1 5312 6153 -2 200 128 0 26 chrX 158846685 158846724 -3753206 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 4469 228 16 5 chrX 158846725 158847826 -3752104 - L1 LINE L1 -798 5348 4235 2628 176 59 21 chrX 158847828 158848407 -3751523 + L1MA8 LINE L1 4134 4734 -1412 42423 36 22 3 chrX 158848447 158854479 -3745451 - L1PA2 LINE L1 -4 6151 4 5223 146 70 6 chrX 158854489 158855930 -3744000 + L1MA8 LINE L1 4751 6286 -5 340 267 9 57 chrX 158855931 158856036 -3743894 + MIR SINE MIR 21 120 -142 * 364 274 10 0 chrX 158856035 158856137 -3743793 - L2 LINE L2 -1077 2237 2135 1617 221 11 16 chrX 158856725 158857092 -3742838 + MLT1A1 LTR MaLR 1 365 0 240 250 0 0 chrX 158857228 158857288 -3742642 + L1ME3 LINE L1 6103 6162 0 524 305 76 71 chrX 158858093 158858447 -3741483 + L2 LINE L2 2917 3272 0 374 303 79 36 chrX 158858433 158858598 -3741332 - MIR SINE MIR -70 192 21 * 181 286 0 20 chrX 158859029 158859078 -3740852 + L2 LINE L2 3138 3185 -87 260 255 132 19 chrX 158859933 158860039 -3739891 + MIR SINE MIR 40 157 -105 329 322 9 26 chrX 158860061 158860176 -3739754 - MIR SINE MIR -34 228 116 282 290 10 20 chrX 158860227 158860327 -3739603 + MIR SINE MIR 153 251 -11 413 267 175 3 chrX 158860674 158860873 -3739057 + MLT1J1 LTR MaLR 3 233 -217 451 49 0 0 chrX 158860888 158860949 -3738981 + L1PA4 LINE L1 6092 6152 -3 275 206 132 15 chrX 158861032 158861100 -3738830 + MLT1J1 LTR MaLR 359 434 -12 1104 184 49 15 chrX 158861141 158861408 -3738522 + L1MA8 LINE L1 6010 6285 -6 268 329 111 44 chrX 158861943 158862308 -3737622 + L2 LINE L2 2610 3018 -254 362 318 53 109 chrX 158862472 158862830 -3737100 + L2 LINE L2 2932 3269 -3 388 240 20 20 chrX 158863026 158863126 -3736804 - U6 snRNA snRNA -6 101 2 426 340 112 22 chrX 158864363 158864766 -3735164 + L2 LINE L2 1512 1950 -1364 600 307 39 18 chrX 158864795 158865049 -3734881 + MIR SINE MIR 6 260 -2 460 345 109 44 chrX 158865050 158865108 -3734822 + L2 LINE L2 1948 2001 -1313 1011 298 31 46 chrX 158865108 158865521 -3734409 - MLT1I LTR MaLR -2 407 1 460 345 109 44 chrX 158865521 158866212 -3733718 + L2 LINE L2 2001 2746 -568 381 359 22 74 chrX 158866357 158866627 -3733303 + L2 LINE L2 3017 3272 0 226 271 21 10 chrX 158867541 158867637 -3732293 + (TA)n Simple_repeat Simple_repeat 1 97 0 38 61 0 0 chrX 158867697 158867763 -3732167 + AT_rich Low_complexity Low_complexity 1 66 0 323 252 9 43 chrX 158869171 158869286 -3730644 + L1ME LINE L1 199 309 -5896 323 259 29 36 chrX 158869711 158869850 -3730080 + L1ME LINE L1 456 593 -5612 227 373 186 6 chrX 158869877 158870054 -3729876 + L2 LINE L2 2724 2932 -382 246 250 0 0 chrX 158870061 158870113 -3729817 + MER94 DNA DNA 7 58 -76 262 360 11 34 chrX 158870255 158870433 -3729497 + L1ME LINE L1 527 700 -5505 776 253 56 51 chrX 158870454 158871047 -3728883 + L1ME LINE L1 748 1343 -4862 19905 171 15 8 chrX 158871246 158873339 -3726591 + L1MA4 LINE L1 19 2097 -5468 2393 133 14 3 chrX 158873339 158873708 -3726222 - THE1C LTR MaLR 0 375 3 10293 110 27 41 chrX 158873710 158875312 -3724618 - THE1C-int LTR MaLR 0 1580 1 2584 102 36 3 chrX 158875312 158875675 -3724255 - THE1C LTR MaLR 0 375 1 19905 171 15 8 chrX 158875675 158878905 -3721025 + L1MA4 LINE L1 2096 5381 -2184 278 281 14 50 chrX 158878915 158879054 -3720876 + L1ME LINE L1 1567 1700 -4696 709 293 112 16 chrX 158879055 158879369 -3720561 + L2 LINE L2 2970 3313 0 4930 196 30 22 chrX 158879557 158880671 -3719259 - L1 LINE L1 -2091 4055 2952 2385 115 28 6 chrX 158880671 158881027 -3718903 + THE1B LTR MaLR 1 364 0 1796 181 0 7 chrX 158881033 158881320 -3718610 - AluJo SINE Alu -27 285 1 4930 196 30 22 chrX 158881320 158881511 -3718419 - L1 LINE L1 -3198 2948 2732 4383 189 20 9 chrX 158881521 158882545 -3717385 + L1MA4 LINE L1 5626 6661 -904 2334 99 65 3 chrX 158882547 158882899 -3717031 + THE1C LTR MaLR 2 375 0 9348 121 29 45 chrX 158882904 158883023 -3716907 + THE1C-int LTR MaLR 6 125 -1455 2189 141 0 0 chrX 158883023 158883329 -3716601 + AluSx SINE Alu 1 306 -6 9348 121 29 45 chrX 158883329 158883412 -3716518 + THE1C-int LTR MaLR 125 208 -1372 2063 136 0 3 chrX 158883412 158883713 -3716217 - AluSq SINE Alu -13 300 1 9348 121 29 45 chrX 158883713 158885110 -3714820 + THE1C-int LTR MaLR 208 1580 0 2376 127 16 5 chrX 158885110 158885481 -3714449 + THE1C LTR MaLR 1 375 0 4045 156 5 9 chrX 158885496 158886251 -3713679 + L1MA4 LINE L1 6673 7424 -295 293 123 49 49 chrX 158886281 158886362 -3713568 + L1MB3 LINE L1 6100 6180 -3 423 296 110 33 chrX 158886382 158886683 -3713247 + L1ME LINE L1 2271 2594 -3621 562 256 90 46 chrX 158886858 158887338 -3712592 + L1ME LINE L1 2791 3291 -2924 25 51 0 0 chrX 158887478 158887517 -3712413 + AT_rich Low_complexity Low_complexity 1 39 0 238 143 75 0 chrX 158887807 158887954 -3711976 + (TA)n Simple_repeat Simple_repeat 2 159 0 55 48 0 0 chrX 158887954 158888037 -3711893 + AT_rich Low_complexity Low_complexity 1 83 0 2189 98 0 14 chrX 158888038 158888344 -3711586 + AluSg SINE Alu 1 302 0 860 306 30 19 chrX 158888803 158889277 -3710653 + L1ME3A LINE L1 5363 5841 -329 10889 35 0 0 chrX 158890682 158892751 -3707179 - L1PA4 LINE L1 -2 6153 4078 337 315 71 16 chrX 158894339 158894466 -3705464 - L2 LINE L2 -5 3267 3134 353 364 27 0 chrX 158894503 158894613 -3705317 - L2 LINE L2 0 3272 3160 234 318 141 0 chrX 158895836 158895921 -3704009 - L2 LINE L2 -21 3251 3155 213 170 21 21 chrX 158896435 158896482 -3703448 - L2 LINE L2 -2 3311 3265 1673 167 31 0 chrX 158898159 158898453 -3701477 - MLT1A1 LTR MaLR 0 365 63 315 189 31 44 chrX 158898605 158898764 -3701166 + (TA)n Simple_repeat Simple_repeat 1 157 0 1979 129 58 25 chrX 158899847 158900210 -3699720 + THE1C LTR MaLR 1 375 0 221 233 0 0 chrX 158900339 158900382 -3699548 + CT-rich Low_complexity Low_complexity 2 44 0 253 302 328 0 chrX 158900876 158901068 -3698862 + MIR SINE MIR 3 257 -5 233 236 18 0 chrX 158901852 158901907 -3698023 - L3 LINE CR1 -245 1332 1277 22 0 0 0 chrX 158901914 158901936 -3697994 + AT_rich Low_complexity Low_complexity 1 22 0 35550 83 5 31 chrX 158902081 158908393 -3691537 - L1PA6 LINE L1 0 6154 11 185 286 0 66 chrX 158908410 158908501 -3691429 - L3 LINE CR1 -395 1182 1098 2119 136 7 0 chrX 158909252 158909562 -3690368 - AluSx SINE Alu 0 312 1 454 303 33 13 chrX 158910126 158910308 -3689622 + MIR3 SINE MIR 12 198 -10 1781 29 0 0 chrX 158910794 158911004 -3688926 - L1PA5 LINE L1 -5 6149 5940 1939 103 20 10 chrX 158913933 158914233 -3685697 + AluSg SINE Alu 1 303 -7 192 254 18 0 chrX 158914240 158914295 -3685635 - MIR SINE MIR -23 239 184 38 81 0 0 chrX 158915195 158915282 -3684648 + AT_rich Low_complexity Low_complexity 1 87 0 610 227 49 43 chrX 158915861 158916046 -3683884 + MIR SINE MIR 2 187 -75 183 130 56 0 chrX 158916048 158916102 -3683828 + (TA)n Simple_repeat Simple_repeat 2 58 0 24 0 0 0 chrX 158916182 158916206 -3683724 + AT_rich Low_complexity Low_complexity 1 24 0 961 294 75 19 chrX 158917760 158918226 -3681704 + ERVL LTR ERVL 4762 5253 -511 348 239 64 46 chrX 158918891 158919000 -3680930 - MIR SINE MIR -15 247 137 2010 138 16 42 chrX 158919120 158919505 -3680425 + THE1C LTR MaLR 1 375 0 638 275 79 74 chrX 158919784 158920162 -3679768 + MLT1I LTR MaLR 30 409 0 252 0 0 0 chrX 158920540 158920568 -3679362 + (CA)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chrX 158921544 158921572 -3678358 + AT_rich Low_complexity Low_complexity 1 28 0 304 243 15 103 chrX 158922074 158922210 -3677720 - L1MC4 LINE L1 -1337 6705 6582 1635 195 21 0 chrX 158922427 158922714 -3677216 + AluJo SINE Alu 7 299 -13 2145 80 7 21 chrX 158923227 158923560 -3676370 - AluSg SINE Alu 0 329 1 229 279 38 0 chrX 158924132 158924211 -3675719 + MIR SINE MIR 107 188 -74 668 144 0 0 chrX 158924451 158924548 -3675382 - AluS SINE Alu -215 97 1 623 291 88 66 chrX 158924629 158925083 -3674847 + LTR16B LTR ERVL 1 464 0 1922 135 0 0 chrX 158926927 158927213 -3672717 + AluSx SINE Alu 24 309 0 180 279 59 29 chrX 158928324 158928392 -3671538 + L3 LINE CR1 1118 1187 -390 602 267 146 19 chrX 158929031 158929237 -3670693 + MIR SINE MIR 28 259 -3 183 299 115 0 chrX 158929345 158929432 -3670498 - L3 LINE CR1 -239 1338 1242 250 264 56 0 chrX 158929441 158929513 -3670417 - MIR SINE MIR -179 83 8 * 291 303 82 8 chrX 158929505 158929627 -3670303 + L2 LINE L2 3141 3271 -1 23 78 0 0 chrX 158930077 158930128 -3669802 + AT_rich Low_complexity Low_complexity 1 51 0 192 77 0 0 chrX 158930639 158930665 -3669265 + (TC)n Simple_repeat Simple_repeat 1 26 0 395 282 123 18 chrX 158930784 158930947 -3668983 + MIR SINE MIR 28 207 -55 669 218 53 0 chrX 158931034 158931204 -3668726 - MER46C DNA MER2_type -44 294 116 403 183 109 36 chrX 158931485 158931622 -3668308 + L1 LINE L1 5127 5273 -873 248 265 108 20 chrX 158933106 158933208 -3666722 - L1ME4a LINE L1 -20 6101 5991 702 197 7 21 chrX 158935197 158935339 -3664591 + FLAM_C SINE Alu 1 140 -3 210 37 0 0 chrX 158936032 158936059 -3663871 + (TG)n Simple_repeat Simple_repeat 2 28 0 718 291 77 39 chrX 158937116 158937505 -3662425 - MER20B DNA MER1_type -376 407 4 2049 190 80 12 chrX 158938971 158939456 -3660474 + L1MC4a LINE L1 7286 7803 -5 269 267 61 30 chrX 158940125 158940256 -3659674 + L2 LINE L2 2929 3063 -209 283 74 19 37 chrX 158941553 158941607 -3658323 - L1ME3A LINE L1 -207 5963 5911 6044 28 1 0 chrX 158941623 158942332 -3657598 - L1PA4 LINE L1 -1 6154 5445 232 348 75 18 chrX 158943304 158943531 -3656399 + L1ME LINE L1 236 475 -5595 2171 273 67 40 chrX 158943651 158944925 -3655005 + L1ME LINE L1 400 1723 -4357 2187 115 10 3 chrX 158944925 158945230 -3654700 - AluSq SINE Alu -6 307 1 2171 273 67 40 chrX 158945230 158945793 -3654137 + L1ME LINE L1 1723 2270 -3810 1136 128 10 25 chrX 158945794 158945983 -3653947 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 3894 143 24 0 chrX 158945983 158946648 -3653282 - L1PA16 LINE L1 -9 6157 5477 5860 49 4 0 chrX 158946648 158947377 -3652553 + L1PA8 LINE L1 5429 6160 -12 1136 128 10 25 chrX 158947377 158947390 -3652540 - Tigger4(Zombi) DNA MER2_type -188 2543 2531 3851 186 23 16 chrX 158947390 158948384 -3651546 - L1PA16 LINE L1 -697 5469 4477 441 162 0 0 chrX 158948479 158948553 -3651377 - L1P4 LINE L1 -351 5815 5742 1608 153 21 0 chrX 158948553 158948834 -3651096 + L1PA16 LINE L1 5879 6166 0 35 41 0 0 chrX 158949128 158949177 -3650753 + AT_rich Low_complexity Low_complexity 1 49 0 299 281 76 45 chrX 158949215 158949439 -3650491 + L1ME LINE L1 4791 5021 -1125 * 719 296 48 48 chrX 158949418 158949793 -3650137 + L1ME LINE L1 5328 5702 -460 389 284 111 25 chrX 158950478 158950640 -3649290 + MIR SINE MIR 32 207 -55 14608 239 56 14 chrX 158950950 158956426 -3643504 + L1P4 LINE L1 2 6221 -595 342 169 77 0 chrX 158956426 158956491 -3643439 + L1PA16 LINE L1 6095 6164 -2 320 349 32 8 chrX 158956548 158956674 -3643256 - MER5B DNA MER1_type -48 130 2 205 326 163 34 chrX 158957619 158957766 -3642164 + L2 LINE L2 3107 3272 0 593 390 65 18 chrX 158957809 158958360 -3641570 + L2 LINE L2 2698 3267 -5 5650 161 73 7 chrX 158958381 158959596 -3640334 + L1PB1 LINE L1 3 1442 -5421 * 11843 178 89 12 chrX 158959593 158964131 -3635799 + L1PB1 LINE L1 1959 6866 -1 359 253 0 142 chrX 158964630 158964820 -3635110 - MER5B DNA MER1_type 0 178 16 239 177 16 0 chrX 158965246 158965308 -3634622 + CT-rich Low_complexity Low_complexity 1 63 0 2796 186 27 12 chrX 158965323 158965909 -3634021 + L1MB5 LINE L1 5572 6166 -8 21 0 0 0 chrX 158965909 158965930 -3634000 + AT_rich Low_complexity Low_complexity 1 21 0 2245 118 0 0 chrX 158965938 158966235 -3633695 - AluSq SINE Alu -16 297 1 2552 75 0 0 chrX 158966246 158966552 -3633378 - AluSc SINE Alu -3 306 1 223 300 11 44 chrX 158967382 158967472 -3632458 + L2 LINE L2 3186 3272 0 1421 322 94 33 chrX 158967669 158968507 -3631423 + L3 LINE CR1 234 1122 -455 741 95 0 0 chrX 158968639 158968734 -3631196 + L1PA5 LINE L1 4 98 -6048 * 36419 64 2 2 chrX 158968724 158974263 -3625667 + L1PA5 LINE L1 617 6153 -1 196 311 0 27 chrX 158974457 158974531 -3625399 + L3 LINE CR1 1133 1204 -373 250 323 0 81 chrX 158974653 158974777 -3625153 + L3 LINE CR1 1413 1526 -51 185 316 168 0 chrX 158975101 158975196 -3624734 - MIR SINE MIR -68 140 30 300 333 56 22 chrX 158975935 158976115 -3623815 - MIR SINE MIR -56 206 21 795 269 167 42 chrX 158976721 158977427 -3622503 + L1M4 LINE L1 3975 4768 -1378 1541 230 39 11 chrX 158977427 158977887 -3622043 + L1M4 LINE L1 3797 4269 -1877 356 233 0 0 chrX 158977883 158977943 -3621987 + L1M4b LINE L1 2 61 -6798 * 699 197 15 0 chrX 158977962 158978094 -3621836 - BC200 scRNA scRNA -66 134 1 2951 268 32 33 chrX 158978094 158978971 -3620959 + L1M4b LINE L1 75 950 -5909 630 112 10 0 chrX 158979020 158979118 -3620812 - L1PB4 LINE L1 -3 6153 6055 1624 185 17 7 chrX 158979128 158979420 -3620510 - AluJo SINE Alu -17 295 1 22 0 0 0 chrX 158980455 158980477 -3619453 + AT_rich Low_complexity Low_complexity 1 22 0 5382 178 10 17 chrX 158980477 158980948 -3618982 - L1MA4 LINE L1 -8 6292 5819 1705 155 49 23 chrX 158980948 158981252 -3618678 + AluJo SINE Alu 1 312 0 5382 178 10 17 chrX 158981252 158982548 -3617382 - L1MA4 LINE L1 -481 5819 4537 2254 87 31 0 chrX 158982632 158982920 -3617010 - AluSx SINE Alu -15 297 1 870 227 25 4 chrX 158982942 158983180 -3616750 - L1MEc LINE L1 -3405 2810 2568 2452 258 99 11 chrX 158983189 158984176 -3615754 - L1MEc LINE L1 -3903 2493 1420 5260 127 5 14 chrX 158984280 158984947 -3614983 - L1PB3 LINE L1 0 6154 5482 2094 105 20 7 chrX 158984947 158985241 -3614689 - AluSc SINE Alu -11 298 1 378 61 0 0 chrX 158985245 158985294 -3614636 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 2192 101 0 0 chrX 158985294 158985572 -3614358 - AluSg SINE Alu -32 278 1 5260 127 5 14 chrX 158985572 158985738 -3614192 - L1PB3 LINE L1 -673 5481 5323 297 287 37 43 chrX 158985778 158985942 -3613988 - L1MEc LINE L1 -5145 1251 906 1676 258 56 80 chrX 158986026 158986806 -3613124 - L1MEc LINE L1 -5572 824 63 330 266 73 16 chrX 158986882 158987006 -3612924 + L2 LINE L2 2384 2514 -800 249 256 56 24 chrX 158987143 158987268 -3612662 + L1MC4a LINE L1 6338 6466 -1342 2647 235 156 24 chrX 158987282 158988337 -3611593 + L1MC4 LINE L1 6569 7762 -280 371 171 43 0 chrX 158988599 158988669 -3611261 - Tigger5 DNA MER2_type -1 2322 2250 7084 114 18 2 chrX 158989617 158991031 -3608899 + L1MA2 LINE L1 4869 6304 0 1124 174 56 0 chrX 158991202 158991421 -3608509 + AluJb SINE Alu 76 305 0 350 310 26 71 chrX 158991633 158991788 -3608142 - MIR3 SINE MIR -8 200 53 240 266 34 15 chrX 158991938 158992014 -3607916 + MIR SINE MIR 13 92 -116 4621 113 10 1 chrX 158992015 158992688 -3607242 - Tigger1 DNA MER2_type 0 2418 1740 10388 22 0 0 chrX 158992688 158993934 -3605996 + L1P LINE L1 1969 3214 -2932 11208 135 13 3 chrX 158993935 158995664 -3604266 - Tigger1 DNA MER2_type -672 1746 1 192 247 24 47 chrX 158995666 158995751 -3604179 + MIR SINE MIR 124 206 -56 22 0 0 0 chrX 158996082 158996104 -3603826 + AT_rich Low_complexity Low_complexity 1 22 0 329 263 85 0 chrX 158997160 158997278 -3602652 + L1MC4a LINE L1 7246 7373 -435 1000 264 33 0 chrX 158997568 158997810 -3602120 + MIR SINE MIR 2 251 -11 578 293 183 36 chrX 158997883 158998272 -3601658 + L3 LINE CR1 1131 1576 -1 479 305 92 0 chrX 158998693 158998857 -3601073 + LTR33 LTR ERVL 37 215 -306 292 269 56 9 chrX 158998962 158999070 -3600860 + LTR33 LTR ERVL 402 514 -7 306 158 13 40 chrX 158999122 158999198 -3600732 + MER116 DNA Mariner 5 78 -2 447 264 97 21 chrX 158999322 158999466 -3600464 + MIR3 SINE MIR 26 180 -28 182 326 0 0 chrX 158999498 158999541 -3600389 + L2 LINE L2 3143 3185 -87 11160 164 35 21 chrX 158999988 159003230 -3596700 - L1PA15 LINE L1 -2 6163 2875 4596 15 0 0 chrX 159003323 159003848 -3596082 - L1HS LINE L1 -255 5900 5376 2361 4 0 0 chrX 159003848 159004113 -3595817 + L1HS LINE L1 5891 6155 0 264 127 0 0 chrX 159004115 159004170 -3595760 + (A)n Simple_repeat Simple_repeat 1 55 0 1634 174 6 61 chrX 159004194 159004522 -3595408 + AluJo SINE Alu 3 312 0 2067 99 63 0 chrX 159004711 159004995 -3594935 + AluSg SINE Alu 1 302 -8 688 207 0 0 chrX 159005040 159005175 -3594755 - FLAM_A SINE Alu 0 142 8 891 345 39 76 chrX 159005782 159006549 -3593381 - L2 LINE L2 -420 2894 2156 1257 252 65 32 chrX 159006776 159007117 -3592813 + LTR16A1 LTR ERVL 106 457 0 25 31 0 0 chrX 159007150 159007182 -3592748 + AT_rich Low_complexity Low_complexity 1 32 0 492 293 103 37 chrX 159007255 159007576 -3592354 - L2 LINE L2 -1370 1944 1603 205 262 16 16 chrX 159008028 159008089 -3591841 + GA-rich Low_complexity Low_complexity 2 62 0 348 175 12 12 chrX 159009316 159009396 -3590534 + MER116 DNA Mariner 1 80 0 270 253 27 0 chrX 159010909 159010984 -3588946 + L2 LINE L2 2208 2284 -1030 1410 278 26 47 chrX 159011085 159011553 -3588377 + L2 LINE L2 2305 2762 -552 4215 134 45 25 chrX 159011563 159012094 -3587836 - L1MA8 LINE L1 -161 6130 5578 2625 55 0 0 chrX 159012094 159012404 -3587526 - AluY SINE Alu -1 310 1 4215 134 45 25 chrX 159012404 159012628 -3587302 - L1MA8 LINE L1 -713 5578 5360 704 183 14 0 chrX 159012629 159012771 -3587159 + L1MA8 LINE L1 6148 6291 0 1437 272 78 29 chrX 159012793 159013279 -3586651 + L2 LINE L2 2804 3313 0 270 266 187 49 chrX 159013338 159013541 -3586389 + MIR SINE MIR 23 253 -9 183 191 95 0 chrX 159013552 159013594 -3586336 - L2 LINE L2 -4 3268 3223 247 321 167 0 chrX 159013879 159014041 -3585889 + MIR SINE MIR 48 236 -26 2018 300 97 39 chrX 159014065 159015161 -3584769 + L2 LINE L2 728 1886 -1428 450 202 45 0 chrX 159015164 159015253 -3584677 - L2 LINE L2 0 3313 3221 1099 301 105 29 chrX 159015341 159015819 -3584111 + L2 LINE L2 2462 2975 -339 325 282 138 36 chrX 159015832 159016027 -3583903 + L2 LINE L2 3099 3313 0 1372 117 33 0 chrX 159016520 159016733 -3583197 - L1PA11 LINE L1 -3 6171 5952 3583 114 20 27 chrX 159016733 159017023 -3582907 - L1PA11 LINE L1 -466 5702 5411 3194 70 0 0 chrX 159017023 159017436 -3582494 - L1PA6 LINE L1 0 6154 5742 3583 114 20 27 chrX 159017436 159017723 -3582207 - L1PA11 LINE L1 -757 5411 5123 2329 94 0 28 chrX 159017723 159018041 -3581889 - AluY SINE Alu -2 309 1 3583 114 20 27 chrX 159018041 159018417 -3581513 - L1PA11 LINE L1 -1045 5123 4767 1398 117 78 0 chrX 159018410 159018640 -3581290 + L1PA11 LINE L1 4516 4763 -1383 * 512 271 57 43 chrX 159019390 159019766 -3580164 + LTR16C LTR ERVL 76 491 0 196 383 126 13 chrX 159019774 159020155 -3579775 + L2 LINE L2 1442 1865 -1449 478 321 45 50 chrX 159021341 159021718 -3578212 + L1ME3A LINE L1 700 1074 -5298 338 307 63 61 chrX 159021790 159022167 -3577763 + L1ME3A LINE L1 2112 2472 -3912 776 299 107 25 chrX 159022184 159023024 -3576906 + L1ME3A LINE L1 2507 3415 -2967 251 231 120 19 chrX 159023073 159023181 -3576749 + L1ME3A LINE L1 4858 4976 -1406 350 86 0 0 chrX 159023185 159023243 -3576687 - L1MA7 LINE L1 -2 6289 6232 1230 92 0 0 chrX 159023243 159023407 -3576523 - AluSg/x SINE Alu -26 286 123 5627 139 24 16 chrX 159023408 159024200 -3575730 - L1MA7 LINE L1 -47 6244 5439 2301 180 22 28 chrX 159024200 159024660 -3575270 + MSTB2 LTR MaLR 1 457 0 5627 139 24 16 chrX 159024660 159024907 -3575023 - L1MA7 LINE L1 -852 5439 5196 3513 62 17 7 chrX 159024947 159025411 -3574519 - L1PA7 LINE L1 0 6154 5686 3409 53 0 0 chrX 159025411 159025859 -3574071 + L1PA7 LINE L1 5233 5680 -474 2943 176 17 14 chrX 159025862 159026437 -3573493 - L1MA7 LINE L1 -940 5206 4630 * 4067 188 32 56 chrX 159026436 159026496 -3573434 + L1 LINE L1 3648 3708 -2438 2354 96 0 10 chrX 159026496 159026809 -3573121 + AluY SINE Alu 1 310 -1 4067 188 32 56 chrX 159026809 159027772 -3572158 + L1 LINE L1 3708 4647 -1499 1303 282 46 37 chrX 159027776 159028902 -3571028 + L1ME3A LINE L1 4993 6134 -272 * 7355 22 0 0 chrX 159028899 159029768 -3570162 - L1PA3 LINE L1 -910 5236 4368 7689 23 1 0 chrX 159029768 159030699 -3569231 + L1PA3 LINE L1 5223 6154 -1 288 74 19 37 chrX 159030715 159030769 -3569161 + L1ME3A LINE L1 6147 6199 -207 810 307 54 23 chrX 159031095 159031574 -3568356 + L1ME4a LINE L1 5405 5898 -223 701 94 0 0 chrX 159033516 159033612 -3566318 - L1P LINE L1 -4912 1234 1139 21 36 0 0 chrX 159034152 159034180 -3565750 + AT_rich Low_complexity Low_complexity 1 28 0 196 219 370 0 chrX 159034180 159034253 -3565677 - MIR SINE MIR -15 247 148 672 248 116 5 chrX 159035288 159035486 -3564444 - MIR SINE MIR 0 262 43 299 130 19 0 chrX 159037406 159037460 -3562470 + (CAT)n Simple_repeat Simple_repeat 2 56 0 563 241 74 97 chrX 159037460 159037676 -3562254 - MIR SINE MIR -26 236 26 1668 230 54 11 chrX 159039352 159039800 -3560130 + MLT1C LTR MaLR 1 467 0 341 204 194 0 chrX 159040631 159040739 -3559191 + MER94 DNA DNA 5 133 -1 221 328 102 23 chrX 159041155 159041283 -3558647 + MIR SINE MIR 104 241 -21 495 369 40 7 chrX 159042844 159043137 -3556793 - L2 LINE L2 -328 2944 2640 1592 153 29 21 chrX 159043590 159043719 -3556211 + AluJo SINE Alu 1 128 -190 240 35 0 0 chrX 159043719 159043748 -3556182 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1592 153 29 21 chrX 159043748 159043934 -3555996 + AluJo SINE Alu 128 318 0 2078 241 24 44 chrX 159043947 159044586 -3555344 + MLT1E2 LTR MaLR 1 626 0 231 188 0 0 chrX 159044657 159044705 -3555225 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 229 337 30 41 chrX 159044815 159044984 -3554946 - MIR SINE MIR -60 202 36 417 292 50 8 chrX 159045820 159045940 -3553990 + MIR3 SINE MIR 76 200 -8 207 307 67 0 chrX 159046122 159046197 -3553733 - L2 LINE L2 -22 3291 3212 449 321 42 1 chrX 159046425 159046637 -3553293 + L1MB5 LINE L1 4005 4226 -1920 300 250 11 0 chrX 159046742 159046830 -3553100 + L1MB5 LINE L1 4390 4478 -1668 318 194 0 0 chrX 159046914 159046981 -3552949 + (TG)n Simple_repeat Simple_repeat 2 68 0 1512 263 30 22 chrX 159047539 159048003 -3551927 + L1MD2 LINE L1 107 574 -6070 423 0 0 0 chrX 159048123 159048170 -3551760 + (TTA)n Simple_repeat Simple_repeat 2 48 0 384 239 83 0 chrX 159048170 159048279 -3551651 + L1MD2 LINE L1 822 939 -5603 * 4346 231 29 25 chrX 159048274 159049544 -3550386 + L1MA3 LINE L1 10 1957 -5608 4293 180 29 19 chrX 159049554 159049959 -3549971 + L1MA3 LINE L1 3491 3890 -3834 222 62 0 0 chrX 159049959 159049991 -3549939 + (TA)n Simple_repeat Simple_repeat 2 33 0 4293 180 29 19 chrX 159049991 159052458 -3547472 + L1MA3 LINE L1 3890 6573 -1151 1585 174 45 21 chrX 159052458 159052745 -3547185 + AluJo SINE Alu 1 294 -18 4293 180 29 19 chrX 159052745 159053907 -3546023 + L1MA3 LINE L1 6573 7721 -3 36 23 0 0 chrX 159053978 159054021 -3545909 + AT_rich Low_complexity Low_complexity 1 43 0 1245 197 59 112 chrX 159054021 159054415 -3545515 + L1MD2 LINE L1 927 1282 -5260 1729 158 3 20 chrX 159054415 159054707 -3545223 + AluJo SINE Alu 1 287 -25 1245 197 59 112 chrX 159054707 159054891 -3545039 + L1MD2 LINE L1 1282 1474 -5068 * 1624 212 27 7 chrX 159054889 159055294 -3544636 + L1MB5 LINE L1 4915 5327 -819 258 51 26 0 chrX 159055309 159055348 -3544582 + L1MB7 LINE L1 6145 6184 0 4050 175 12 45 chrX 159055391 159056235 -3543695 + L1MB5 LINE L1 5321 6136 -38 1430 208 75 0 chrX 159056240 159056572 -3543358 + L1MD2 LINE L1 1461 1817 -4829 * 2456 256 58 17 chrX 159056559 159057421 -3542509 + L1MD2 LINE L1 3994 4890 -1754 1277 226 14 52 chrX 159057417 159057766 -3542164 + L1MD2 LINE L1 6044 6379 -478 * 5074 157 53 17 chrX 159057777 159058738 -3541192 + L1MC2 LINE L1 5348 6343 -1 998 247 85 74 chrX 159058734 159059192 -3540738 + L1MD2 LINE L1 6379 6841 -16 * 10389 28 1 0 chrX 159059413 159061423 -3538507 + L1PA2 LINE L1 4145 6153 -2 3555 259 87 40 chrX 159061522 159062120 -3537810 + L1ME3A LINE L1 2584 3153 -2993 4629 42 0 7 chrX 159062120 159062695 -3537235 + L1PA4 LINE L1 5585 6155 0 3555 259 87 40 chrX 159062695 159064088 -3535842 + L1ME3A LINE L1 3153 4668 -1478 473 175 29 19 chrX 159064197 159064300 -3535630 + THE1C LTR MaLR 1 104 -271 * 1105 88 24 35 chrX 159064297 159064467 -3535463 + THE1C LTR MaLR 208 375 0 297 0 0 0 chrX 159064485 159064518 -3535412 + (CA)n Simple_repeat Simple_repeat 2 34 0 710 195 90 40 chrX 159064564 159064764 -3535166 + MER6B DNA MER2_type 1 210 0 2551 245 36 38 chrX 159064796 159065949 -3533981 + L1ME3A LINE L1 5013 6165 -5 240 254 95 37 chrX 159065957 159066107 -3533823 + L1M4 LINE L1 4463 4628 -1518 1504 155 39 11 chrX 159066107 159066391 -3533539 + L1MA8 LINE L1 5998 6289 -2 240 254 95 37 chrX 159066391 159066429 -3533501 + L1M4 LINE L1 4628 4662 -1484 248 313 38 125 chrX 159067515 159067940 -3531990 + L2 LINE L2 2367 2754 -560 1556 189 26 26 chrX 159068302 159068614 -3531316 - AluJo SINE Alu 0 312 1 1630 226 59 34 chrX 159068614 159069092 -3530838 - L1MC4 LINE L1 -209 7833 7344 208 358 90 50 chrX 159069140 159069341 -3530589 + L2 LINE L2 2852 3060 -212 24 32 0 0 chrX 159069390 159069421 -3530509 + AT_rich Low_complexity Low_complexity 1 31 0 472 203 8 51 chrX 159070143 159070176 -3529754 - MIR SINE MIR -1 261 228 478 254 28 23 chrX 159070176 159070353 -3529577 - MER104 DNA MER2_type -1 179 2 472 203 8 51 chrX 159070353 159070437 -3529493 - MIR SINE MIR -34 228 149 583 323 110 61 chrX 159070448 159071140 -3528790 + L2 LINE L2 2549 3267 -5 415 327 78 39 chrX 159072598 159072907 -3527023 + L2 LINE L2 2499 2819 -495 843 251 58 59 chrX 159074020 159074577 -3525353 + HAL1 LINE L1 999 1554 -953 * 1247 278 50 34 chrX 159074572 159074889 -3525041 + HAL1 LINE L1 1771 2081 -426 1811 183 52 70 chrX 159074889 159075403 -3524527 + MLT1D LTR MaLR 1 505 0 1247 278 50 34 chrX 159075403 159075703 -3524227 + HAL1 LINE L1 2081 2398 -109 24 53 0 0 chrX 159076057 159076095 -3523835 + AT_rich Low_complexity Low_complexity 1 38 0 582 296 78 32 chrX 159076403 159076836 -3523094 + L1MC2 LINE L1 3874 4326 -1820 * 1152 260 74 26 chrX 159076832 159077443 -3522487 + L1ME1 LINE L1 2916 3555 -2591 2864 75 21 8 chrX 159077444 159077828 -3522102 + MLT2A1 LTR ERVL 1 389 -55 4771 220 52 51 chrX 159077839 159078526 -3521404 + L1ME1 LINE L1 3551 4236 -1938 4713 58 2 13 chrX 159078526 159079135 -3520795 + L1PA7 LINE L1 5547 6148 -6 4771 220 52 51 chrX 159079135 159079691 -3520239 + L1ME1 LINE L1 4236 4790 -1384 825 138 193 6 chrX 159079691 159079872 -3520058 - MER20 DNA MER1_type -4 215 1 4771 220 52 51 chrX 159079872 159080548 -3519382 + L1ME1 LINE L1 4790 5473 -701 5808 179 67 23 chrX 159080550 159082497 -3517433 + L1MC2 LINE L1 4295 6330 -14 2119 104 3 17 chrX 159082497 159082808 -3517122 - AluSx SINE Alu 0 309 3 5808 179 67 23 chrX 159082808 159082822 -3517108 + L1MC2 LINE L1 6330 6342 -2 2295 236 57 42 chrX 159082819 159083269 -3516661 + L1ME1 LINE L1 5475 6099 -235 * 6825 64 14 0 chrX 159083269 159084402 -3515528 + L1PA7 LINE L1 5009 6153 -1 2295 236 57 42 chrX 159084402 159084641 -3515289 + L1ME1 LINE L1 6099 6333 -1 843 268 92 59 chrX 159084714 159085531 -3514399 + L1M4 LINE L1 4487 5330 -816 214 230 287 23 chrX 159085923 159086010 -3513920 - MIR SINE MIR -95 167 58 304 302 138 36 chrX 159086013 159086288 -3513642 + L1ME4a LINE L1 4735 5037 -1109 266 316 26 32 chrX 159086611 159086766 -3513164 + L1ME4a LINE L1 5381 5534 -636 607 319 59 43 chrX 159086860 159087164 -3512766 - L2 LINE L2 -4 3309 3001 341 254 49 16 chrX 159087239 159087361 -3512569 + L1ME4a LINE L1 5797 5922 -199 386 224 161 0 chrX 159087362 159087505 -3512425 + L1ME4a LINE L1 5955 6120 -1 647 308 207 23 chrX 159087571 159088010 -3511920 + L3 LINE CR1 1047 1566 -11 297 68 0 0 chrX 159088109 159088153 -3511777 + (T)n Simple_repeat Simple_repeat 1 44 0 2743 26 0 0 chrX 159088154 159088462 -3511468 + AluYa5 SINE Alu 1 308 -3 349 302 12 0 chrX 159089695 159089781 -3510149 + L2 LINE L2 3134 3220 -52 181 337 47 12 chrX 159090002 159090088 -3509842 + L2 LINE L2 2227 2315 -999 269 265 15 83 chrX 159090101 159090233 -3509697 + MIR3 SINE MIR 77 199 -9 406 340 108 37 chrX 159090313 159090610 -3509320 + L2 LINE L2 2951 3268 -4 253 296 12 12 chrX 159090621 159090702 -3509228 + L2 LINE L2 2718 2798 -516 270 349 28 18 chrX 159090886 159090995 -3508935 - L2 LINE L2 0 3272 3163 1082 198 67 35 chrX 159091225 159091538 -3508392 + MER5C DNA MER1_type 1 323 -1 497 279 152 6 chrX 159091555 159091713 -3508217 + MER5A DNA MER1_type 9 189 0 517 271 57 11 chrX 159091771 159091948 -3507982 - MIR3 SINE MIR -15 193 9 231 308 99 0 chrX 159092359 159092450 -3507480 + L3 LINE CR1 956 1055 -522 715 350 91 19 chrX 159092473 159092793 -3507137 + L3 LINE CR1 1233 1575 -2 738 311 23 27 chrX 159093111 159093371 -3506559 + MIR SINE MIR 2 260 -2 417 103 0 0 chrX 159094693 159094761 -3505169 + (TC)n Simple_repeat Simple_repeat 2 69 0 429 314 50 13 chrX 159095620 159095779 -3504151 + MIR3 SINE MIR 38 202 -6 358 291 109 30 chrX 159096329 159096494 -3503436 - MIR3 SINE MIR -14 194 17 1444 199 104 45 chrX 159096658 159097099 -3502831 - MLT1C LTR MaLR 0 467 1 22 56 0 0 chrX 159097160 159097196 -3502734 + AT_rich Low_complexity Low_complexity 1 36 0 779 279 5 14 chrX 159097360 159097575 -3502355 + L1ME LINE L1 313 525 -5847 444 191 29 29 chrX 159097622 159097727 -3502203 + MER63 DNA MER1_type 11 741 -321 1311 295 29 11 chrX 159097802 159098347 -3501583 + L1ME LINE L1 565 1119 -5253 367 284 45 29 chrX 159098349 159098592 -3501338 + L1ME LINE L1 1069 1389 -4983 3405 149 9 0 chrX 159098602 159099157 -3500773 + L1MA2 LINE L1 3694 4253 -1893 * 6673 116 25 6 chrX 159099149 159100331 -3499599 + L1MA2 LINE L1 5100 6304 0 470 90 13 0 chrX 159100373 159100451 -3499479 + L1MA10 LINE L1 6256 6334 0 1100 300 75 23 chrX 159100455 159100631 -3499299 + L1ME LINE L1 1489 1654 -4909 2274 60 0 7 chrX 159100631 159100939 -3498991 - AluY SINE Alu 0 306 1 1100 300 75 23 chrX 159100939 159101451 -3498479 + L1ME LINE L1 1654 2215 -4348 642 336 11 21 chrX 159101479 159101759 -3498171 + L1MB1 LINE L1 1366 1642 -5854 1089 184 0 5 chrX 159101818 159102030 -3497900 + L1MB3 LINE L1 5969 6179 -4 996 250 86 79 chrX 159102039 159102284 -3497646 + L1MB1 LINE L1 2901 3143 -4422 188 83 0 28 chrX 159102284 159102320 -3497610 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 996 250 86 79 chrX 159102320 159102722 -3497208 + L1MB1 LINE L1 3143 3553 -4012 934 44 0 0 chrX 159102722 159102836 -3497094 - THE1A LTR MaLR 0 355 242 500 152 0 0 chrX 159102812 159102891 -3497039 + THE1A LTR MaLR 85 163 -192 * 2058 190 124 67 chrX 159102891 159103409 -3496521 + L1MB1 LINE L1 4397 4884 -2681 222 37 0 0 chrX 159103409 159103436 -3496494 + (TG)n Simple_repeat Simple_repeat 2 28 0 2058 190 124 67 chrX 159103436 159103447 -3496483 + L1MB1 LINE L1 4884 4893 -2672 2048 107 3 13 chrX 159103447 159103745 -3496185 - AluY SINE Alu -16 295 1 2058 190 124 67 chrX 159103745 159103981 -3495949 + L1MB1 LINE L1 4893 5207 -2358 2118 131 0 0 chrX 159103981 159104278 -3495652 + AluSx SINE Alu 1 297 -15 1381 126 0 0 chrX 159104309 159104523 -3495407 - L1PA10 LINE L1 -856 5290 5077 * 6351 83 5 0 chrX 159104518 159105369 -3494561 + L1PA10 LINE L1 5311 6165 -3 * 6455 203 41 7 chrX 159105361 159105527 -3494403 + L1MB1 LINE L1 5191 5350 -2360 2340 58 0 0 chrX 159105527 159105821 -3494109 - L1PA7 LINE L1 -1 6153 5860 6455 203 41 7 chrX 159105821 159107229 -3492701 + L1MB1 LINE L1 5350 6838 -872 4589 45 2 2 chrX 159107229 159107826 -3492104 + L1PA7 LINE L1 5581 6179 0 6455 203 41 7 chrX 159107826 159108074 -3491856 + L1MB1 LINE L1 6838 7076 -634 1333 114 34 38 chrX 159108067 159108304 -3491626 + L1MB1 LINE L1 7372 7607 -1 * 733 240 43 23 chrX 159108299 159108698 -3491232 + L1MEc LINE L1 2034 2395 -3820 * 1533 247 70 18 chrX 159108711 159109165 -3490765 + L1M3e LINE L1 5 482 -6548 5481 148 32 41 chrX 159109166 159111245 -3488685 + L1MA9 LINE L1 4260 6312 0 847 173 13 13 chrX 159111261 159111411 -3488519 + L1MC1 LINE L1 5979 6128 -205 1422 172 82 0 chrX 159111413 159111669 -3488261 + AluJb SINE Alu 3 279 -33 186 43 0 0 chrX 159111669 159111692 -3488238 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1230 175 9 0 chrX 159111692 159111909 -3488021 + L1MC1 LINE L1 6110 6328 -5 737 279 45 43 chrX 159111912 159112404 -3487526 + L1MEc LINE L1 2389 2881 -3334 256 200 0 0 chrX 159112407 159112457 -3487473 + L1ME LINE L1 5642 5691 -473 2498 154 26 24 chrX 159112457 159112949 -3486981 + L1MA7 LINE L1 5787 6279 -12 1941 161 30 6 chrX 159113113 159113449 -3486481 + MER2 DNA MER2_type 1 344 0 2346 249 83 15 chrX 159113451 159114517 -3485413 + L1M4 LINE L1 4224 5362 -784 * 14687 196 14 11 chrX 159114503 159117651 -3482279 + L1PB1 LINE L1 1009 4146 -2241 315 0 0 0 chrX 159117651 159117686 -3482244 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 14687 196 14 11 chrX 159117686 159118586 -3481344 + L1PB1 LINE L1 4146 5042 -1345 189 0 0 0 chrX 159118586 159118607 -3481323 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 14687 196 14 11 chrX 159118607 159119441 -3480489 + L1PB1 LINE L1 5042 6386 -1 2597 205 62 27 chrX 159119419 159120234 -3479696 + L1ME2 LINE L1 5541 6391 -9 * 974 298 79 19 chrX 159120265 159121164 -3478766 + L1M4 LINE L1 3452 4404 -1742 2426 54 7 0 chrX 159121174 159121469 -3478461 + AluSp SINE Alu 1 297 -16 359 335 13 68 chrX 159122185 159122495 -3477435 + L1ME3A LINE L1 582 874 -5196 442 248 76 30 chrX 159122592 159122856 -3477074 + L1ME3A LINE L1 988 1312 -4819 549 288 99 52 chrX 159124631 159125678 -3474252 + L1ME3A LINE L1 1292 2388 -3873 1167 244 102 47 chrX 159125760 159126428 -3473502 + L1ME3A LINE L1 4526 5246 -852 224 91 23 0 chrX 159126428 159126472 -3473458 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1167 244 102 47 chrX 159126472 159126684 -3473246 + L1ME3A LINE L1 5246 5445 -653 774 231 0 30 chrX 159126699 159126902 -3473028 + MER63A DNA MER1_type 12 208 -2 1280 205 23 17 chrX 159126904 159127206 -3472724 + L1ME3A LINE L1 5442 5745 -359 333 304 0 0 chrX 159127209 159127301 -3472629 + MER58 DNA MER1_type 6 97 -2323 428 235 10 0 chrX 159127315 159127417 -3472513 + MER58 DNA MER1_type 2318 2420 0 771 204 33 24 chrX 159127425 159127448 -3472482 + L1ME3A LINE L1 5744 5765 -339 840 190 86 0 chrX 159127448 159127622 -3472308 + MER5A DNA MER1_type 1 189 0 771 204 33 24 chrX 159127622 159127809 -3472121 + L1ME3A LINE L1 5765 5956 -148 240 154 0 0 chrX 159127872 159127924 -3472006 + GA-rich Low_complexity Low_complexity 2 53 0 660 209 6 62 chrX 159127932 159128109 -3471821 - MLT1A2 LTR MaLR -204 170 4 2326 42 59 0 chrX 159128237 159128526 -3471404 + AluY SINE Alu 1 306 -5 571 290 74 16 chrX 159128777 159129609 -3470321 + L1MEc LINE L1 2150 3023 -3192 22 0 0 0 chrX 159129731 159129753 -3470177 + AT_rich Low_complexity Low_complexity 1 22 0 411 321 58 20 chrX 159130790 159131011 -3468919 + MIR SINE MIR 5 232 -30 274 326 11 27 chrX 159131087 159131265 -3468665 - MIR SINE MIR -41 221 50 2301 251 97 35 chrX 159131444 159132266 -3467664 + L2 LINE L2 944 1816 -1498 2672 175 87 15 chrX 159132270 159132922 -3467008 - L1MA9 LINE L1 -1 6311 5613 393 201 141 0 chrX 159132918 159133067 -3466863 - L1M3c LINE L1 -4776 1189 1020 * 1953 152 18 34 chrX 159133069 159133300 -3466630 + THE1C LTR MaLR 1 225 -150 7646 21 0 1 chrX 159133300 159134240 -3465690 + L1PA4 LINE L1 5211 6149 -6 1953 152 18 34 chrX 159134240 159134389 -3465541 + THE1C LTR MaLR 225 375 0 2163 96 0 126 chrX 159134389 159134818 -3465112 + THE1C-int LTR MaLR 1 375 -1205 5972 138 7 9 chrX 159134827 159136279 -3463651 - L1PB1 LINE L1 0 6151 4705 3062 198 7 12 chrX 159136278 159136997 -3462933 + L1PB1 LINE L1 3989 4703 -1443 * 7656 115 11 6 chrX 159136985 159138167 -3461763 + THE1C-int LTR MaLR 359 1578 -2 2437 112 19 16 chrX 159138169 159138543 -3461387 + THE1C LTR MaLR 1 375 0 2143 266 20 33 chrX 159138543 159139115 -3460815 - L1M3c LINE L1 -4940 1015 506 2443 110 28 0 chrX 159139115 159139469 -3460461 - THE1B LTR MaLR 0 364 1 2143 266 20 33 chrX 159139469 159139628 -3460302 - L1M3c LINE L1 -5449 506 346 1125 242 25 37 chrX 159139691 159140013 -3459917 - L1M3c LINE L1 -5626 329 12 2408 292 145 13 chrX 159140135 159141319 -3458611 + L2 LINE L2 1952 3296 -17 610 143 9 0 chrX 159141319 159141424 -3458506 - MLT1D LTR MaLR -399 106 1 408 269 0 23 chrX 159141447 159141577 -3458353 - MIR SINE MIR -3 259 133 183 412 0 0 chrX 159141616 159141684 -3458246 + L3 LINE CR1 1507 1574 -3 430 295 0 9 chrX 159143508 159143613 -3456317 + MIR SINE MIR 13 116 -146 213 94 0 0 chrX 159143981 159144013 -3455917 + (GA)n Simple_repeat Simple_repeat 1 32 0 326 335 106 0 chrX 159144282 159144452 -3455478 + MER5A DNA MER1_type 2 189 0 278 308 105 21 chrX 159144514 159144657 -3455273 - MIR SINE MIR -30 232 78 474 321 0 8 chrX 159144756 159144890 -3455040 + MIR SINE MIR 17 149 -113 483 77 0 0 chrX 159144893 159144958 -3454972 - MSTB2 LTR MaLR 0 428 364 2441 47 0 0 chrX 159144961 159145278 -3454652 - L1PA5 LINE L1 -1143 5003 4687 7432 32 2 2 chrX 159145278 159146466 -3453464 + L1PA5 LINE L1 5003 6154 0 2278 153 10 8 chrX 159146466 159146865 -3453065 - MSTB2 LTR MaLR -57 400 1 2866 211 87 9 chrX 159146865 159147544 -3452386 - MSTB2-int LTR MaLR 0 1651 920 309 236 11 22 chrX 159147567 159147656 -3452274 + MIR SINE MIR 175 262 0 1757 189 50 14 chrX 159148810 159149170 -3450760 - THE1C LTR MaLR -2 373 1 10147 104 35 40 chrX 159149170 159150758 -3449172 - THE1C-int LTR MaLR 0 1580 1 1898 146 86 14 chrX 159150758 159151108 -3448822 - THE1C LTR MaLR 0 375 1 258 284 35 17 chrX 159151158 159151274 -3448656 - MARNA DNA Mariner -282 304 187 191 414 23 0 chrX 159151301 159151388 -3448542 - L3 LINE CR1 -1449 128 40 250 271 21 62 chrX 159151505 159151649 -3448281 - MER20B DNA MER1_type -642 141 4 429 268 81 8 chrX 159151906 159152115 -3447815 - L2 LINE L2 -3 3310 3024 2391 294 141 25 chrX 159152116 159153336 -3446594 - L2 LINE L2 -668 2646 1285 326 78 39 13 chrX 159153454 159153531 -3446399 + A-rich Low_complexity Low_complexity 2 80 0 301 175 0 0 chrX 159154866 159154929 -3445001 + L1PA16 LINE L1 6104 6166 0 402 280 88 24 chrX 159155249 159155374 -3444556 + MIR3 SINE MIR 57 189 -19 22 0 0 0 chrX 159155573 159155595 -3444335 + AT_rich Low_complexity Low_complexity 1 22 0 1683 169 7 40 chrX 159156162 159156463 -3443467 - AluJo SINE Alu -21 291 1 1435 115 32 39 chrX 159156563 159156842 -3443088 + L1MA8 LINE L1 6009 6285 -6 2368 84 6 0 chrX 159157559 159157903 -3442027 + L1PA2 LINE L1 1546 1891 -4255 26247 23 0 0 chrX 159257903 159261942 -3337988 + L1PA2 LINE L1 2117 6155 0 303 224 0 30 chrX 159261953 159262020 -3337910 - L2 LINE L2 -601 2713 2649 328 312 30 27 chrX 159262033 159262296 -3337634 + L1MC4a LINE L1 5678 5941 -1867 1927 224 107 49 chrX 159262358 159262948 -3336982 + MLT1E2 LTR MaLR 1 624 -2 672 180 16 0 chrX 159263029 159263157 -3336773 - MER5A DNA MER1_type -59 130 1 * 679 308 59 13 chrX 159263157 159263392 -3336538 + MIR SINE MIR 17 262 0 604 313 6 11 chrX 159264906 159265082 -3334848 + MER5B DNA MER1_type 3 177 -1 277 330 18 46 chrX 159265828 159265937 -3333993 + MIR3 SINE MIR 78 183 -25 331 303 18 9 chrX 159265972 159266081 -3333849 - MIR SINE MIR -57 151 42 198 91 0 0 chrX 159266336 159266369 -3333561 + (CA)n Simple_repeat Simple_repeat 2 34 0 310 237 59 0 chrX 159266480 159266598 -3333332 - L1MEc LINE L1 -1480 4735 4611 21 0 0 0 chrX 159266700 159266721 -3333209 + AT_rich Low_complexity Low_complexity 1 21 0 382 227 30 108 chrX 159266737 159266807 -3333123 - L2 LINE L2 -81 3232 3158 2073 141 7 0 chrX 159266807 159267105 -3332825 + AluJo SINE Alu 1 300 -12 382 227 30 108 chrX 159267105 159267237 -3332693 - L2 LINE L2 -155 3158 3046 497 193 99 56 chrX 159267239 159267400 -3332530 - MIR SINE MIR -67 195 28 262 274 120 15 chrX 159267514 159267780 -3332150 - L1MEc LINE L1 -1699 4516 4223 * 1017 248 47 8 chrX 159267762 159268149 -3331781 - L1MEc LINE L1 -3179 3036 2635 859 307 83 17 chrX 159268343 159269043 -3330887 - L1MEc LINE L1 -4594 1802 1057 199 236 0 18 chrX 159269365 159269420 -3330510 + MIR SINE MIR 209 262 0 539 348 80 31 chrX 159269434 159269948 -3329982 - L1M4 LINE L1 -2445 3701 3163 2333 155 54 5 chrX 159269989 159270395 -3329535 - MSTB LTR MaLR 0 426 1 328 188 0 16 chrX 159270532 159270596 -3329334 + MLT1I LTR MaLR 347 409 0 1248 314 142 26 chrX 159271540 159272624 -3327306 - L2 LINE L2 -1 3312 2116 22 0 0 0 chrX 159272875 159272897 -3327033 + AT_rich Low_complexity Low_complexity 1 22 0 2451 43 0 0 chrX 159273292 159273592 -3326338 + L1PA7 LINE L1 5855 6154 0 1748 165 0 0 chrX 159273754 159274027 -3325903 + AluJb SINE Alu 7 279 -33 2257 121 19 25 chrX 159274027 159274392 -3325538 + THE1B LTR MaLR 2 364 0 5405 140 2 5 chrX 159275035 159275464 -3324466 + L1MA5A LINE L1 5366 5795 -502 219 69 0 0 chrX 159275464 159275493 -3324437 + (CA)n Simple_repeat Simple_repeat 2 30 0 5405 140 2 5 chrX 159275493 159275993 -3323937 + L1MA5A LINE L1 5795 6292 -5 501 17 0 0 chrX 159276443 159276501 -3323429 + (CA)n Simple_repeat Simple_repeat 1 58 0 459 350 7 0 chrX 159276727 159276870 -3323060 + MIR3 SINE MIR 2 145 -63 232 188 172 0 chrX 159277904 159277968 -3321962 + MIR SINE MIR 77 151 -111 651 325 43 75 chrX 159277988 159278363 -3321567 - L3 LINE CR1 -1021 556 194 527 67 0 0 chrX 159278369 159278444 -3321486 - L1PA5 LINE L1 0 6154 6080 259 303 286 0 chrX 159278756 159278875 -3321055 - L2 LINE L2 -9 3263 3111 6569 77 21 3 chrX 159279612 159280592 -3319338 + L1PA10 LINE L1 5170 6165 -3 321 289 91 16 chrX 159281384 159281505 -3318425 - L1MEd LINE L1 -5988 131 2 214 256 12 24 chrX 159282476 159282558 -3317372 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 242 331 0 55 chrX 159282963 159283090 -3316840 - MIR3 SINE MIR -45 163 44 2547 60 0 0 chrX 159283386 159283686 -3316244 + AluY SINE Alu 2 301 -10 252 111 0 0 chrX 159283708 159283753 -3316177 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 * 360 43 0 0 chrX 159283752 159283798 -3316132 + (TG)n Simple_repeat Simple_repeat 1 46 0 410 217 87 81 chrX 159283858 159284019 -3315911 + MLT1J2 LTR MaLR 289 450 0 2020 147 138 29 chrX 159284093 159284316 -3315614 - MLT1C LTR MaLR 0 467 270 447 19 0 0 chrX 159284316 159284368 -3315562 + (TG)n Simple_repeat Simple_repeat 2 53 0 2020 147 138 29 chrX 159284368 159284565 -3315365 - MLT1C LTR MaLR -197 270 1 2221 156 16 8 chrX 159284818 159285203 -3314727 + MLT1B LTR MaLR 1 388 -2 246 62 0 0 chrX 159285328 159285360 -3314570 + (T)n Simple_repeat Simple_repeat 1 32 0 2017 214 136 9 chrX 159286008 159286532 -3313398 - MLT1E LTR MaLR -1 592 3 940 190 6 0 chrX 159286812 159286975 -3312955 + MER5A DNA MER1_type 26 189 0 2211 123 6 6 chrX 159287058 159287409 -3312521 - MLT1B LTR MaLR -2 388 38 1312 173 217 6 chrX 159287656 159287826 -3312104 + MSTD LTR MaLR 1 134 -262 669 47 0 0 chrX 159287826 159287911 -3312019 + (TC)n Simple_repeat Simple_repeat 2 86 0 1312 173 217 6 chrX 159287911 159288063 -3311867 + MSTD LTR MaLR 134 391 -5 1894 166 27 9 chrX 159288370 159288708 -3311222 + MER2 DNA MER2_type 1 344 0 350 136 0 0 chrX 159289173 159289239 -3310691 + LTR37B LTR ERV1 395 460 -8 1456 136 45 11 chrX 159289287 159289574 -3310356 - L1MB3 LINE L1 -25 6158 5862 215 205 0 0 chrX 159289900 159289939 -3309991 - MIR SINE MIR -113 149 111 208 308 39 13 chrX 159289948 159290026 -3309904 - L2 LINE L2 -1 3312 3233 225 103 77 0 chrX 159290096 159290135 -3309795 + MER2 DNA MER2_type 269 310 -35 452 252 126 68 chrX 159290291 159290569 -3309361 - HAL1 LINE L1 -33 2474 2181 228 208 19 19 chrX 159290844 159290897 -3309033 - L1MEd LINE L1 -5506 613 561 226 26 0 53 chrX 159291396 159291434 -3308496 + MER31B LTR ERV1 1 36 -430 1220 136 30 42 chrX 159291440 159291705 -3308225 + MER31A LTR ERV1 215 476 -9 234 183 37 61 chrX 159291710 159291792 -3308138 - HAL1b LINE L1 -515 833 754 873 270 106 19 chrX 159291832 159292639 -3307291 - HAL1 LINE L1 -343 2164 1227 41636 46 3 1 chrX 159293297 159299439 -3300491 + L1PA4 LINE L1 2 6155 0 384 339 49 6 chrX 159300261 159300727 -3299203 + L1M4 LINE L1 4860 5345 -801 567 39 0 0 chrX 159300731 159300852 -3299078 + L1PA2 LINE L1 6078 6198 0 1574 261 25 52 chrX 159301453 159301977 -3297953 - L2 LINE L2 0 3313 2804 282 232 14 29 chrX 159302096 159302165 -3297765 + L2 LINE L2 3205 3272 0 415 291 46 92 chrX 159302238 159302434 -3297496 + MIR3 SINE MIR 11 197 -11 408 313 22 28 chrX 159302763 159302945 -3296985 - MIR3 SINE MIR -4 204 24 831 229 48 41 chrX 159303899 159304191 -3295739 - L1ME1 LINE L1 -10 6156 5863 2291 227 38 11 chrX 159304525 159305181 -3294749 - L1ME1 LINE L1 -1483 4663 3990 363 247 34 55 chrX 159305221 159305367 -3294563 + L1MEd LINE L1 11 153 -5966 625 335 160 30 chrX 159305457 159306381 -3293549 + L2 LINE L2 2054 3095 -177 24 0 0 0 chrX 159306494 159306518 -3293412 + AT_rich Low_complexity Low_complexity 1 24 0 276 306 144 9 chrX 159306578 159306689 -3293241 - L2 LINE L2 -4 3268 3143 202 289 13 26 chrX 159306963 159307039 -3292891 + GA-rich Low_complexity Low_complexity 3 77 0 2417 97 0 10 chrX 159307460 159307770 -3292160 - AluSx SINE Alu -5 307 1 933 231 35 31 chrX 159308724 159308979 -3290951 + MIR SINE MIR 6 261 -1 351 339 71 18 chrX 159309704 159309928 -3290002 + LTR16A LTR ERVL 206 441 -9 751 261 73 20 chrX 159311300 159311545 -3288385 - LTR33 LTR ERVL -226 295 38 313 143 13 13 chrX 159312109 159312186 -3287744 + GA-rich Low_complexity Low_complexity 1 77 0 235 318 38 42 chrX 159312683 159312852 -3287078 - MIR SINE MIR -48 214 47 756 244 44 30 chrX 159314498 159314793 -3285137 - L1ME3A LINE L1 -223 5947 5649 989 197 5 40 chrX 159314793 159314963 -3284967 + MER20 DNA MER1_type 1 163 -56 1616 164 58 106 chrX 159314963 159315379 -3284551 - MSTD LTR MaLR 0 396 1 989 197 5 40 chrX 159315379 159315431 -3284499 + MER20 DNA MER1_type 163 215 -4 452 271 42 18 chrX 159315434 159315600 -3284330 - L1ME3A LINE L1 -515 5655 5486 494 216 10 0 chrX 159315623 159315725 -3284205 - MER67A LTR ERV1 -36 507 405 4060 135 22 0 chrX 159315756 159316423 -3283507 - L1PA16 LINE L1 -9 6157 5476 * 11643 70 8 1 chrX 159316421 159318748 -3281182 - L1PA6 LINE L1 0 6154 3832 6008 36 0 0 chrX 159318748 159319465 -3280465 - L1PA4 LINE L1 -6 6149 5429 3928 53 0 6 chrX 159319465 159319993 -3279937 - L1PA6 LINE L1 -2306 3840 3316 396 0 0 0 chrX 159520443 159520487 -3079443 + (TA)n Simple_repeat Simple_repeat 2 45 0 1634 100 12 4 chrX 159521085 159521325 -3078605 + AluSx SINE Alu 35 276 -36 2211 75 0 0 chrX 159521495 159521763 -3078167 - AluSx SINE Alu -40 272 5 471 241 93 37 chrX 159521864 159522071 -3077859 + L1MC4a LINE L1 6116 6310 -1498 496 92 26 0 chrX 159522071 159522147 -3077783 + L1MA10 LINE L1 6246 6323 -11 471 241 93 37 chrX 159522147 159522237 -3077693 + L1MC4a LINE L1 6310 6587 -1221 467 247 38 25 chrX 159522245 159522403 -3077527 + L1ME LINE L1 225 384 -6012 3288 231 95 60 chrX 159522429 159522949 -3076981 + L1ME LINE L1 505 1005 -5391 361 117 0 0 chrX 159522949 159523009 -3076921 + Alu SINE Alu 243 302 0 3288 231 95 60 chrX 159523009 159523929 -3076001 + L1ME LINE L1 1005 2057 -4339 376 237 0 0 chrX 159523930 159524006 -3075924 + MER20 DNA MER1_type 2 77 -142 240 35 0 0 chrX 159524006 159524035 -3075895 + (CA)n Simple_repeat Simple_repeat 2 30 0 271 184 0 0 chrX 159524035 159524084 -3075846 + MER20 DNA MER1_type 171 219 0 270 159 79 0 chrX 159524088 159524151 -3075779 + L1ME LINE L1 2054 2121 -4275 * 2035 217 34 20 chrX 159524149 159524762 -3075168 + L1ME LINE L1 3986 4607 -1608 826 160 7 12 chrX 159524759 159524940 -3074990 + L1ME LINE L1 5679 5856 -379 * 433 279 38 22 chrX 159525040 159525054 -3074876 + L2 LINE L2 2291 2303 -1011 1783 120 65 14 chrX 159525054 159525330 -3074600 - AluJb SINE Alu -22 290 1 433 279 38 22 chrX 159525330 159525498 -3074432 + L2 LINE L2 2303 2476 -838 916 209 72 69 chrX 159525808 159525890 -3074040 + L1MC4 LINE L1 6460 6540 -1502 2187 70 40 36 chrX 159525890 159526191 -3073739 + AluY SINE Alu 1 302 -9 916 209 72 69 chrX 159526191 159526301 -3073629 + L1MC4 LINE L1 6540 6648 -1394 627 108 0 0 chrX 159526301 159526394 -3073536 + (CA)n Simple_repeat Simple_repeat 2 94 0 916 209 72 69 chrX 159526394 159526549 -3073381 + L1MC4 LINE L1 6648 6809 -1233 * 1901 211 92 4 chrX 159526548 159527664 -3072266 + L1MB8 LINE L1 4802 6172 -6 617 72 0 0 chrX 159527864 159527947 -3071983 - L1M2 LINE L1 -4577 2272 2190 1056 126 57 6 chrX 159528085 159528260 -3071670 + MSTB LTR MaLR 243 426 0 2125 214 56 10 chrX 159529086 159529606 -3070324 + REP3 LTR ERV 1 544 -18 749 207 31 78 chrX 159529614 159529870 -3070060 + L1MC4 LINE L1 7794 8037 -5 2520 199 42 15 chrX 159530237 159530951 -3068979 + L1M4 LINE L1 2596 3328 -2818 1202 175 8 21 chrX 159530973 159531213 -3068717 + L1 LINE L1 17 253 -7312 5541 162 82 1 chrX 159531224 159532243 -3067687 + L1 LINE L1 384 1485 -6080 641 140 44 0 chrX 159532246 159532360 -3067570 + L1 LINE L1 5068 5186 -2379 3065 227 24 32 chrX 159532376 159533292 -3066638 + L1M4 LINE L1 3370 4278 -1868 466 77 0 0 chrX 159533312 159533377 -3066553 - MER54B LTR ERVL -728 65 1 681 172 18 31 chrX 159533377 159533497 -3066433 + L1MB8 LINE L1 6018 6137 -41 2095 134 83 23 chrX 159533497 159533884 -3066046 + LTR57 LTR ERVL 1 410 -1 681 172 18 31 chrX 159533884 159533926 -3066004 + L1MB8 LINE L1 6137 6178 0 1229 241 20 64 chrX 159533965 159534494 -3065436 + L1MEc LINE L1 718 1222 -5174 1912 147 0 19 chrX 159534494 159534806 -3065124 + AluJb SINE Alu 1 306 -6 1229 241 20 64 chrX 159534806 159534835 -3065095 + L1MEc LINE L1 1222 1251 -5145 482 192 26 66 chrX 159534816 159534893 -3065037 + L1MEc LINE L1 2708 2778 -3437 * 2335 74 0 0 chrX 159534893 159535191 -3064739 + AluY SINE Alu 1 298 -13 482 192 26 66 chrX 159535191 159535264 -3064666 + L1MEc LINE L1 2778 2852 -3363 833 258 96 0 chrX 159535273 159535629 -3064301 + L1MEc LINE L1 3047 3436 -2779 235 216 20 0 chrX 159537808 159537859 -3062071 - MIR SINE MIR -31 231 180 364 285 44 0 chrX 159537979 159538116 -3061814 + HERV16 LTR ERVL 674 816 -4180 259 25 50 0 chrX 159538160 159538200 -3061730 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 978 290 20 30 chrX 159538282 159539007 -3060923 + HERV16 LTR ERVL 2381 3182 -1901 400 355 23 6 chrX 159539177 159539349 -3060581 - MIR SINE MIR -68 194 20 2251 76 0 7 chrX 159539814 159540117 -3059813 - L1PA7 LINE L1 0 6154 5854 276 184 11 35 chrX 159540242 159540329 -3059601 - L1MDa LINE L1 -4819 1721 1637 256 269 80 34 chrX 159540334 159540509 -3059421 - L1MDa LINE L1 -6183 538 356 190 198 11 77 chrX 159542638 159542729 -3057201 + L2 LINE L2 1326 1410 -1904 674 245 89 52 chrX 159542802 159543071 -3056859 - L2 LINE L2 0 3313 3035 184 315 83 28 chrX 159543058 159543166 -3056764 + L2 LINE L2 3200 3313 0 * 254 261 144 7 chrX 159544008 159544161 -3055769 - L1ME LINE L1 -283 5883 5710 417 295 76 36 chrX 159544170 159544526 -3055404 - L1ME LINE L1 -749 5397 5206 567 271 65 18 chrX 159544529 159544869 -3055061 - L1ME LINE L1 -1062 5084 4729 14682 38 1 2 chrX 159545803 159548343 -3051587 + L1PA4 LINE L1 3617 6155 0 2385 103 0 0 chrX 159548397 159548709 -3051221 + AluSx SINE Alu 1 312 0 250 212 0 30 chrX 159548767 159548833 -3051097 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 276 282 0 0 chrX 159549086 159549171 -3050759 - L1ME LINE L1 -297 5824 5740 1483 148 18 18 chrX 159549402 159549679 -3050251 - MER2 DNA MER2_type -10 335 59 1854 171 7 3 chrX 159549825 159550123 -3049807 + AluJb SINE Alu 1 299 -13 759 185 85 26 chrX 159550230 159550419 -3049511 + L2 LINE L2 3111 3310 -3 14813 181 13 3 chrX 159550480 159555918 -3044012 + L1PB1 LINE L1 1312 6864 -3 473 290 142 55 chrX 159556012 159556804 -3043126 - L2 LINE L2 0 3313 2458 619 294 83 51 chrX 159557618 159557968 -3041962 - L2 LINE L2 -1203 2111 1751 324 284 32 21 chrX 159558097 159558192 -3041738 - MIR3 SINE MIR -24 184 89 4135 191 48 49 chrX 159558301 159559382 -3040548 - L1MD2 LINE L1 -13 6346 5265 1667 183 20 20 chrX 159559382 159559677 -3040253 - AluJo SINE Alu -17 295 1 4135 191 48 49 chrX 159559677 159560266 -3039664 - L1MD2 LINE L1 -1094 5265 4677 206 191 24 0 chrX 159560450 159560492 -3039438 - MER5A DNA MER1_type -139 50 8 435 138 2 0 chrX 159562567 159562651 -3037279 - L1ME1 LINE L1 -11 6435 6363 1655 159 84 22 chrX 159562652 159563030 -3036900 + MSTB1 LTR MaLR 1 432 0 1577 215 103 16 chrX 159563035 159563519 -3036411 - L1ME1 LINE L1 -89 6357 5832 307 278 42 0 chrX 159563605 159563677 -3036253 + L2 LINE L2 3193 3267 -46 243 354 22 6 chrX 159563714 159563895 -3036035 - L1ME1 LINE L1 -1222 5204 5021 534 291 48 34 chrX 159564310 159564516 -3035414 - MER63A DNA MER1_type -1 209 1 210 273 0 15 chrX 159565258 159565324 -3034606 + GA-rich Low_complexity Low_complexity 3 67 0 362 285 167 20 chrX 159566288 159566784 -3033146 - L1ME1 LINE L1 -4638 1969 1174 399 277 99 7 chrX 159566786 159566927 -3033003 - L1ME1 LINE L1 -5089 1340 1187 4135 184 93 31 chrX 159566927 159568343 -3031587 - L1MB2 LINE L1 0 6171 4568 297 96 0 0 chrX 159568343 159568395 -3031535 + Alu SINE Alu 251 302 0 4135 184 93 31 chrX 159568395 159568885 -3031045 - L1MB2 LINE L1 -1603 4568 4110 1970 219 15 16 chrX 159568884 159568974 -3030956 - L1M4 LINE L1 -818 5328 5239 * 2962 187 93 33 chrX 159568974 159569663 -3030267 + MER44D DNA MER2_type 3 604 -1 1970 219 15 16 chrX 159569663 159570119 -3029811 - L1M4 LINE L1 -907 5239 4783 1311 232 31 21 chrX 159570125 159570604 -3029326 - L1MDb LINE L1 -5030 1379 896 348 185 111 67 chrX 159570762 159570897 -3029033 + L1ME3A LINE L1 2872 3012 -3134 3269 238 132 45 chrX 159570899 159573619 -3026311 + L1ME3A LINE L1 3208 6167 -3 218 317 117 25 chrX 159573912 159574032 -3025898 - L2 LINE L2 -208 3064 2934 1019 301 110 32 chrX 159574174 159574926 -3025004 + L1M4 LINE L1 2915 3725 -2421 409 316 99 13 chrX 159574932 159575527 -3024403 + L1M4 LINE L1 4036 4681 -1465 1677 115 90 0 chrX 159575559 159575823 -3024107 + AluSg SINE Alu 14 299 0 1170 252 161 23 chrX 159576077 159576636 -3023294 + HAL1 LINE L1 1282 1917 -590 424 191 50 50 chrX 159576700 159576841 -3023089 + HAL1 LINE L1 2012 2152 -355 270 198 63 79 chrX 159577152 159577278 -3022652 + HAL1 LINE L1 2278 2401 -106 22 0 0 0 chrX 159577345 159577367 -3022563 + AT_rich Low_complexity Low_complexity 1 22 0 534 256 71 35 chrX 159577387 159577641 -3022289 - L1MC4a LINE L1 -1869 5939 5677 191 225 70 84 chrX 159577659 159577730 -3022200 + L2 LINE L2 3232 3301 -12 2234 119 0 0 chrX 159577733 159578028 -3021902 + AluSx SINE Alu 1 295 -17 444 273 110 0 chrX 159579123 159579277 -3020653 + MIR SINE MIR 92 262 0 764 192 127 45 chrX 159579285 159579530 -3020400 + L2 LINE L2 2525 2789 -525 289 270 162 0 chrX 159579546 159579657 -3020273 + MER94 DNA DNA 1 129 -5 900 221 43 5 chrX 159579661 159579869 -3020061 + L2 LINE L2 2859 3074 -239 311 77 0 19 chrX 159579897 159579949 -3019981 + (CA)n Simple_repeat Simple_repeat 2 52 0 2350 87 3 0 chrX 159580652 159580952 -3018978 + AluSp SINE Alu 1 301 -12 210 264 28 14 chrX 159581305 159581377 -3018553 + MIR SINE MIR 117 189 -73 908 249 205 16 chrX 159581416 159581846 -3018084 + L2 LINE L2 1811 2321 -993 342 248 105 7 chrX 159582357 159582510 -3017420 + L1ME2 LINE L1 5856 6023 -141 4117 198 100 22 chrX 159582517 159582940 -3016990 + L1MC4 LINE L1 6803 7192 -803 1544 180 64 15 chrX 159582940 159583123 -3016807 + MER2 DNA MER2_type 1 208 -136 1900 153 0 17 chrX 159583123 159583424 -3016506 + AluJb SINE Alu 1 296 -16 1544 180 64 15 chrX 159583424 159583568 -3016362 + MER2 DNA MER2_type 208 344 0 4117 198 100 22 chrX 159583568 159584304 -3015626 + L1MC4 LINE L1 7192 7995 0 230 240 39 19 chrX 159584537 159584641 -3015289 + L1M4 LINE L1 2203 2308 -3838 1196 221 53 97 chrX 159584674 159585200 -3014730 + MLT1J LTR MaLR 2 504 -7 681 276 84 97 chrX 159585241 159585613 -3014317 + L1M4 LINE L1 2363 2738 -3408 844 251 62 0 chrX 159585613 159585824 -3014106 - MER58A DNA MER1_type 0 224 1 681 276 84 97 chrX 159585824 159586246 -3013684 + L1M4 LINE L1 2738 3147 -2999 413 102 0 0 chrX 159586272 159586331 -3013599 - L1M3 LINE L1 -452 5719 5661 1363 73 115 0 chrX 159586331 159586523 -3013407 - AluY SINE Alu -15 296 83 1211 141 15 0 chrX 159586524 159586722 -3013208 - L1M3 LINE L1 -509 5674 5474 3964 180 107 6 chrX 159586722 159587744 -3012186 - L1M3 LINE L1 -483 5685 4559 739 163 0 7 chrX 159587742 159587883 -3012047 - L1M3 LINE L1 -717 5461 5322 * 2147 144 34 0 chrX 159587883 159588264 -3011666 - L1MB5 LINE L1 0 6174 5781 3162 126 76 26 chrX 159588264 159588721 -3011209 - Tigger3(Golem) DNA MER2_type -1 3028 2532 2207 136 0 0 chrX 159588721 159589031 -3010899 + AluSq SINE Alu 1 310 -3 3162 126 76 26 chrX 159589031 159589176 -3010754 - Tigger3(Golem) DNA MER2_type -497 2532 2396 783 164 99 0 chrX 159589179 159589331 -3010599 + MER46A DNA MER2_type 70 236 0 519 288 49 24 chrX 159589331 159589536 -3010394 - L1MDa LINE L1 -5316 754 545 1505 120 0 41 chrX 159590012 159590254 -3009676 + AluSq SINE Alu 32 263 -50 207 114 0 0 chrX 159590254 159590289 -3009641 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 1288 210 36 32 chrX 159591651 159591932 -3007998 - AluJo SINE Alu -30 282 1 2274 89 0 3 chrX 159591958 159592250 -3007680 + AluY SINE Alu 1 291 -20 247 365 21 0 chrX 159592633 159592729 -3007201 + MIR SINE MIR 29 126 -136 329 309 111 0 chrX 159592771 159592897 -3007033 - L2 LINE L2 -1306 2008 1869 366 209 231 0 chrX 159592950 159593041 -3006889 + L2 LINE L2 3197 3308 -5 267 305 86 75 chrX 159593147 159593321 -3006609 - L2 LINE L2 -1809 1505 1330 1797 218 98 41 chrX 159593556 159594161 -3005769 + L1MC4 LINE L1 7403 8041 -1 243 136 0 0 chrX 159595133 159595177 -3004753 - L1MA7 LINE L1 -3 6288 6245 2089 133 0 7 chrX 159595271 159595573 -3004357 - AluSx SINE Alu -12 300 1 307 254 85 77 chrX 159595837 159595967 -3003963 - MIR SINE MIR -126 136 6 1010 180 20 75 chrX 159596594 159596888 -3003042 + L1MC4 LINE L1 7697 7974 -68 227 256 18 167 chrX 159596922 159597090 -3002840 - MER5B DNA MER1_type -32 146 4 201 320 30 50 chrX 159597117 159597217 -3002713 - L3 LINE CR1 -575 1002 905 501 244 249 10 chrX 159597217 159597422 -3002508 + MIR SINE MIR 3 256 -6 27 0 0 0 chrX 159598359 159598386 -3001544 + AT_rich Low_complexity Low_complexity 1 27 0 366 292 71 32 chrX 159598456 159598610 -3001320 + MIR SINE MIR 97 256 -6 531 188 27 27 chrX 159598613 159598762 -3001168 + L1MEc LINE L1 333 481 -5915 286 339 55 12 chrX 159598897 159599062 -3000868 + L3 LINE CR1 1066 1237 -340 1591 148 66 74 chrX 159599865 159600204 -2999726 + THE1C LTR MaLR 1 338 -37 1820 122 87 3 chrX 159600204 159600492 -2999438 - AluSx SINE Alu 0 312 1 1591 148 66 74 chrX 159600492 159600530 -2999400 + THE1C LTR MaLR 338 375 0 734 200 70 30 chrX 159601480 159601710 -2998220 + Charlie5 DNA MER1_type 2364 2602 -10 243 212 82 0 chrX 159601834 159601919 -2998011 + L1MEc LINE L1 2303 2394 -3821 389 363 99 0 chrX 159602274 159602536 -2997394 - L2 LINE L2 -1448 1866 1579 389 206 93 0 chrX 159602670 159602767 -2997163 + MER5C DNA MER1_type 218 323 -1 1913 118 14 0 chrX 159603817 159604096 -2995834 + AluSx SINE Alu 1 283 -29 367 289 159 41 chrX 159605246 159605610 -2994320 - L1M2 LINE L1 -5767 1082 676 186 43 0 0 chrX 159605733 159605756 -2994174 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 673 199 11 68 chrX 159607024 159607200 -2992730 + MIR SINE MIR 41 206 -56 527 193 123 0 chrX 159607248 159607362 -2992568 - MIR SINE MIR -115 147 20 472 156 273 0 chrX 159607896 159608024 -2991906 + MER103 DNA DNA 2 164 -2 193 329 93 14 chrX 159609066 159609206 -2990724 - L2 LINE L2 -225 3047 2897 271 336 27 20 chrX 159609232 159609381 -2990549 - L2 LINE L2 -789 2525 2376 205 205 0 0 chrX 159609959 159609998 -2989932 + MIR3 SINE MIR 159 197 -11 479 289 88 16 chrX 159612161 159612355 -2987575 - MIR SINE MIR 0 262 55 697 223 85 71 chrX 159613737 159613961 -2985969 - MIR SINE MIR -34 228 2 569 245 115 0 chrX 159614097 159614289 -2985641 - MER58C DNA MER1_type -1 214 1 2291 82 17 0 chrX 159615209 159615500 -2984430 - AluSg SINE Alu -2 308 13 297 253 24 0 chrX 159616124 159616207 -2983723 + MER103 DNA DNA 3 87 -79 1921 143 162 5 chrX 159616575 159616945 -2982985 - MSTA LTR MaLR 0 428 1 309 259 74 0 chrX 159617251 159617359 -2982571 - L1MC4 LINE L1 -652 7390 7275 752 232 17 11 chrX 159617550 159617727 -2982203 + MER5B DNA MER1_type 1 178 0 939 286 45 6 chrX 159619297 159619629 -2980301 + HERVL40 LTR ERVL 2830 3174 -2356 968 245 71 35 chrX 159619631 159619999 -2979931 - HERVL40 LTR ERVL -169 5361 4981 738 205 176 21 chrX 159620141 159620517 -2979413 + L1MC5 LINE L1 7474 7907 -54 302 301 140 29 chrX 159620878 159621014 -2978916 - L2 LINE L2 -22 3250 3100 237 108 0 0 chrX 159621016 159621053 -2978877 + (TG)n Simple_repeat Simple_repeat 2 38 0 241 288 41 0 chrX 159623203 159623276 -2976654 + L2 LINE L2 1823 1898 -1416 1571 173 40 0 chrX 159623508 159623785 -2976145 + AluJo SINE Alu 1 288 -24 697 221 27 7 chrX 159624354 159624503 -2975427 + MER58A DNA MER1_type 1 152 0 551 207 48 0 chrX 159625983 159626157 -2973773 + L1ME2 LINE L1 5697 5882 -284 2629 220 51 38 chrX 159626363 159627324 -2972606 + L1M4 LINE L1 3914 4887 -1259 326 193 36 0 chrX 159627413 159627496 -2972434 - LTR41 LTR ERVL -579 194 109 671 271 143 25 chrX 159627640 159628345 -2971585 + L1M4 LINE L1 4189 4976 -1170 465 208 71 16 chrX 159629018 159629173 -2970757 + MLT1F LTR MaLR 383 529 -13 332 239 231 23 chrX 159629377 159629507 -2970423 + MER5B DNA MER1_type 22 178 0 394 343 106 23 chrX 159630383 159630779 -2969151 - L2 LINE L2 -604 2710 2282 308 198 43 103 chrX 159630772 159630888 -2969042 + L2 LINE L2 3149 3257 -56 * 970 217 92 15 chrX 159630909 159631181 -2968749 + L2 LINE L2 1705 1997 -1317 4330 168 42 28 chrX 159631197 159632169 -2967761 - L1MA9 LINE L1 -38 6274 5289 634 246 95 0 chrX 159632170 159632349 -2967581 + L2 LINE L2 1984 2179 -1135 364 307 40 0 chrX 159632357 159632458 -2967472 + L2 LINE L2 2582 2686 -628 473 191 14 12 chrX 159632474 159632617 -2967313 + MER58A DNA MER1_type 1 224 0 488 239 168 0 chrX 159632618 159632773 -2967157 + L2 LINE L2 2699 2879 -435 1430 237 87 28 chrX 159633097 159633434 -2966496 + L1ME1 LINE L1 674 990 -5225 1713 168 20 24 chrX 159633434 159633726 -2966204 + AluJo SINE Alu 1 291 -21 1430 237 87 28 chrX 159633726 159633873 -2966057 + L1ME1 LINE L1 990 1127 -5088 642 129 83 0 chrX 159633873 159634005 -2965925 + L1MD2 LINE L1 6215 6357 -2 1430 237 87 28 chrX 159634005 159634188 -2965742 + L1ME1 LINE L1 1127 1198 -5017 2300 116 3 0 chrX 159634188 159634498 -2965432 + AluSx SINE Alu 1 311 -1 1430 237 87 28 chrX 159634498 159634562 -2965368 + L1ME1 LINE L1 1198 1257 -4958 2303 66 0 7 chrX 159634764 159635050 -2964880 - AluY SINE Alu -27 284 1 1524 246 59 27 chrX 159635051 159635709 -2964221 + L1ME1 LINE L1 1443 2121 -4275 2983 171 21 13 chrX 159635793 159636657 -2963273 + L1MB5 LINE L1 5117 6164 -10 5560 119 35 22 chrX 159636719 159638582 -2961348 + L1MA8 LINE L1 4372 6269 -22 2008 136 0 13 chrX 159638592 159638893 -2961037 - AluJb SINE Alu -15 297 1 419 214 0 26 chrX 159638935 159639052 -2960878 + L1ME1 LINE L1 2255 2368 -4028 2173 134 0 0 chrX 159639054 159639352 -2960578 + AluSx SINE Alu 1 298 -14 530 189 31 88 chrX 159639375 159639534 -2960396 + MER77 LTR ERV1 452 601 -4 2666 197 86 26 chrX 159639556 159641038 -2958892 + L1ME1 LINE L1 4351 5937 -298 733 101 83 0 chrX 159641040 159641149 -2958781 + AluSg/x SINE Alu 177 294 -18 739 252 17 8 chrX 159641155 159641438 -2958492 + L1ME1 LINE L1 5932 6376 -27 951 246 91 71 chrX 159641541 159642585 -2957345 + L1ME3A LINE L1 4882 5946 -224 652 222 94 22 chrX 159642938 159643118 -2956812 + MIR SINE MIR 59 251 -11 2230 111 0 0 chrX 159643688 159643985 -2955945 + AluSx SINE Alu 1 297 -15 396 204 72 96 chrX 159644134 159644258 -2955672 - MIR SINE MIR -10 252 127 2177 104 37 3 chrX 159644258 159644557 -2955373 + AluSp SINE Alu 1 309 -4 2368 84 0 0 chrX 159644561 159644859 -2955071 + AluSq SINE Alu 3 300 -13 396 204 72 96 chrX 159644859 159644896 -2955034 - MIR SINE MIR -138 124 90 2127 123 7 3 chrX 159645208 159645517 -2954413 + AluSx SINE Alu 1 310 -2 235 179 0 0 chrX 159645580 159645619 -2954311 + L1ME LINE L1 1048 1086 -4984 2395 93 0 3 chrX 159645849 159646160 -2953770 + AluSq SINE Alu 1 310 -3 1500 196 140 60 chrX 159646160 159646279 -2953651 + L1M4 LINE L1 3968 4076 -2070 1737 162 3 39 chrX 159646279 159646587 -2953343 - AluJo SINE Alu -14 298 2 1500 196 140 60 chrX 159646587 159647052 -2952878 + L1M4 LINE L1 4076 4612 -1534 2515 74 6 3 chrX 159647052 159647363 -2952567 - AluSp SINE Alu 0 313 2 1500 196 140 60 chrX 159647363 159647429 -2952501 + L1M4 LINE L1 4612 4671 -1475 599 207 104 12 chrX 159647435 159647599 -2952331 - MLT1G1 LTR MaLR 0 590 412 643 244 150 8 chrX 159647655 159647901 -2952029 - MLT1G1 LTR MaLR -314 281 1 566 272 71 16 chrX 159647992 159648246 -2951684 + L1M4 LINE L1 4726 4993 -1153 324 210 0 0 chrX 159648426 159648488 -2951442 + AluJ/FRAM SINE Alu 216 277 -25 1161 221 60 20 chrX 159648826 159649179 -2950751 + MER63B DNA MER1_type 2 368 -68 32 0 0 0 chrX 159649699 159649731 -2950199 + GC_rich Low_complexity Low_complexity 1 32 0 207 313 0 0 chrX 159650032 159650096 -2949834 + CT-rich Low_complexity Low_complexity 2 65 0 293 207 69 52 chrX 159650510 159650626 -2949304 - MER97a DNA MER1_type? -328 566 449 2492 47 0 0 chrX 159650661 159650960 -2948970 + AluY SINE Alu 1 299 -12 270 0 0 0 chrX 159651142 159651172 -2948758 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2306 73 0 3 chrX 159651174 159651461 -2948469 - AluY SINE Alu -25 286 1 797 296 128 28 chrX 159651806 159652396 -2947534 + L2 LINE L2 2382 3270 -43 405 279 180 0 chrX 159652411 159652533 -2947397 + MIR SINE MIR 78 221 -41 210 351 54 0 chrX 159652537 159652611 -2947319 + L2 LINE L2 3104 3181 -91 851 174 221 0 chrX 159652637 159652827 -2947103 + MIR SINE MIR 3 234 -28 806 298 33 26 chrX 159653169 159653641 -2946289 - L2 LINE L2 -136 3177 2699 811 279 50 46 chrX 159654956 159655411 -2944519 - L1M4 LINE L1 -2687 3459 3003 320 317 229 3 chrX 159655498 159655791 -2944139 - L1MC4a LINE L1 -1737 6071 5713 292 353 28 8 chrX 159655888 159656137 -2943793 - L1MC4a LINE L1 -595 5571 5318 821 297 103 51 chrX 159656163 159656849 -2943081 - L1MC4a LINE L1 -858 5288 4567 21 36 0 0 chrX 159656849 159656877 -2943053 + AT_rich Low_complexity Low_complexity 1 28 0 1728 180 0 7 chrX 159657005 159657299 -2942631 - AluJb SINE Alu -20 292 1 239 311 26 22 chrX 159657385 159657613 -2942317 - L1MC4a LINE L1 -1922 4224 3996 275 306 83 44 chrX 159657865 159658321 -2941609 - L1P LINE L1 -2497 3649 3176 1989 137 30 10 chrX 159658643 159658942 -2940988 + AluSx SINE Alu 1 305 -7 309 275 0 44 chrX 159659015 159659106 -2940824 + MER5B DNA MER1_type 1 87 -91 599 87 0 0 chrX 159659135 159659227 -2940703 - L1MA9 LINE L1 -5 6307 6216 980 241 90 41 chrX 159659383 159659861 -2940069 - MLT1E2 LTR MaLR -4 622 131 5507 220 78 36 chrX 159659918 159660565 -2939365 - L1ME2 LINE L1 -13 6151 5532 1959 146 21 0 chrX 159660565 159660853 -2939077 - AluSx SINE Alu -16 296 3 5507 220 78 36 chrX 159660853 159660981 -2938949 - L1ME2 LINE L1 -632 5532 5411 1766 138 23 26 chrX 159660981 159661285 -2938645 - L1PA16 LINE L1 -9 6157 5855 5507 220 78 36 chrX 159661285 159662748 -2937182 - L1ME2 LINE L1 -753 5411 4010 1761 158 43 54 chrX 159662748 159663140 -2936790 + MLT1B LTR MaLR 2 389 -1 5507 220 78 36 chrX 159663140 159663258 -2936672 - L1ME2 LINE L1 -2154 4010 3898 2610 98 3 16 chrX 159663258 159663626 -2936304 - THE1B LTR MaLR -1 363 1 5507 220 78 36 chrX 159663626 159663639 -2936291 - L1ME2 LINE L1 -2266 3898 3887 2690 39 0 0 chrX 159663639 159663947 -2935983 - AluY SINE Alu -3 308 1 5507 220 78 36 chrX 159663947 159664204 -2935726 - L1ME2 LINE L1 -2277 3887 3642 1652 203 14 3 chrX 159664204 159664499 -2935431 + AluJo SINE Alu 1 298 -14 5507 220 78 36 chrX 159664499 159664559 -2935371 - L1ME2 LINE L1 -2522 3642 3332 1747 172 12 9 chrX 159664639 159664976 -2934954 - L1MB7 LINE L1 -11 6173 5836 3283 160 10 4 chrX 159665048 159665953 -2933977 - L1MB7 LINE L1 -324 5854 4947 2119 99 7 0 chrX 159667045 159667356 -2932574 - AluSx SINE Alu 0 313 1 843 0 0 0 chrX 159667639 159667729 -2932201 + AluYb8 SINE Alu 218 307 -11 704 258 116 11 chrX 159667733 159668001 -2931929 - LTR16A LTR ERVL 0 450 155 1695 130 4 21 chrX 159668953 159669328 -2930602 - Charlie3 DNA MER1_type 0 2712 9 540 307 7 0 chrX 159669335 159669485 -2930445 - ERVL LTR ERVL -1462 4302 4152 755 295 112 11 chrX 159670796 159671152 -2928778 - LTR16A LTR ERVL -47 403 12 1026 352 29 9 chrX 159671446 159672029 -2927901 - ERVL LTR ERVL -579 5185 4591 582 340 63 4 chrX 159672129 159672382 -2927548 - ERVL LTR ERVL -1428 4336 4069 4650 124 109 65 chrX 159672410 159672827 -2927103 - L1MCa LINE L1 -4511 1915 1518 2518 62 0 10 chrX 159672827 159673135 -2926795 - AluY SINE Alu -6 305 1 4650 124 109 65 chrX 159673135 159673837 -2926093 - L1MCa LINE L1 -4908 1518 747 1509 130 105 11 chrX 159673850 159674135 -2925795 + L1MB3 LINE L1 5385 5696 -475 288 0 0 0 chrX 159674165 159674197 -2925733 + (TG)n Simple_repeat Simple_repeat 2 33 0 1929 138 39 3 chrX 159674205 159674517 -2925413 - MLT2B1 LTR ERVL -197 323 1 2038 145 95 26 chrX 159674518 159674887 -2925043 + L1MB3 LINE L1 5693 6035 -148 1683 179 10 3 chrX 159674887 159675178 -2924752 - AluJo SINE Alu -19 293 1 2038 145 95 26 chrX 159675178 159675220 -2924710 + L1MB3 LINE L1 6035 6073 -110 1763 123 98 0 chrX 159675220 159675497 -2924433 + AluJb SINE Alu 1 304 -8 2038 145 95 26 chrX 159675497 159675538 -2924392 + L1MB3 LINE L1 6073 6177 -6 193 239 185 22 chrX 159677518 159677610 -2922320 + L2 LINE L2 2281 2387 -927 186 207 24 49 chrX 159677954 159678036 -2921894 - L2 LINE L2 -771 2543 2464 382 274 183 13 chrX 159678808 159678961 -2920969 + L2 LINE L2 2317 2495 -819 1092 288 137 18 chrX 159678967 159679516 -2920414 + L2 LINE L2 2707 3313 0 301 333 43 26 chrX 159679947 159680064 -2919866 + L2 LINE L2 3173 3291 -22 425 149 0 14 chrX 159680240 159680314 -2919616 + MLT1K LTR MaLR 176 248 -340 1395 143 92 0 chrX 159680900 159681194 -2918736 + MER33 DNA MER1_type 1 321 -3 582 246 95 64 chrX 159681336 159681600 -2918330 + L2 LINE L2 1118 1389 -1925 310 277 36 18 chrX 159681624 159681736 -2918194 - L1MC4 LINE L1 -9 8033 7920 308 247 0 0 chrX 159681849 159681938 -2917992 + L1MC5 LINE L1 7696 7784 -177 493 332 72 15 chrX 159681940 159682443 -2917487 + L1MC4 LINE L1 7220 7730 -312 311 327 80 0 chrX 159682769 159682882 -2917048 + L2 LINE L2 3147 3268 -4 1966 97 56 0 chrX 159683258 159683548 -2916382 + AluSg SINE Alu 1 305 0 531 180 79 35 chrX 159684506 159684698 -2915232 - MLT1F LTR MaLR 0 595 349 387 217 251 39 chrX 159684734 159684941 -2914989 - MLT1F LTR MaLR -281 274 24 1138 231 60 33 chrX 159686223 159686816 -2913114 + L1MDa LINE L1 2121 2766 -3894 441 224 0 16 chrX 159686817 159686932 -2912998 + L1M4 LINE L1 4836 4945 -1201 706 165 79 0 chrX 159686936 159687063 -2912867 - Tigger4(Zombi) DNA MER2_type -2 2729 2593 512 204 0 0 chrX 159687063 159687166 -2912764 - L1M4 LINE L1 -883 5263 5161 * 598 171 153 30 chrX 159687164 159687363 -2912567 + L1PA8A LINE L1 5364 5589 -653 319 238 13 60 chrX 159687416 159687567 -2912363 + L1ME1 LINE L1 6005 6148 -18 1724 197 156 32 chrX 159688212 159688801 -2911129 - LTR65 LTR ERV1 -7 662 1 21 0 0 0 chrX 159688918 159688939 -2910991 + AT_rich Low_complexity Low_complexity 1 21 0 476 182 152 0 chrX 159689214 159689346 -2910584 + MER5C DNA MER1_type 173 324 0 200 273 0 0 chrX 159689783 159689838 -2910092 + L2 LINE L2 2481 2535 -779 647 241 96 0 chrX 159689858 159690024 -2909906 + MIR SINE MIR 74 255 -7 1929 140 3 3 chrX 159690228 159690521 -2909409 + AluJb SINE Alu 10 302 -10 334 352 21 52 chrX 159690614 159690807 -2909123 + L2 LINE L2 2895 3081 -191 332 171 219 19 chrX 159691014 159691119 -2908811 + L2 LINE L2 3187 3312 -1 2228 129 0 0 chrX 159691347 159691656 -2908274 - AluSx SINE Alu -3 309 1 421 358 16 4 chrX 159692304 159692558 -2907372 + HAL1 LINE L1 772 1028 -1479 3355 178 30 5 chrX 159692558 159693181 -2906749 + L1M3f LINE L1 5 643 -4685 580 122 244 0 chrX 159693186 159693301 -2906629 - Tigger2 DNA MER2_type -2266 452 310 563 183 125 5 chrX 159693303 159693493 -2906437 - L1MA4 LINE L1 -274 6031 5785 338 139 42 0 chrX 159693493 159693565 -2906365 + L1MB4 LINE L1 6105 6179 -1 357 309 81 0 chrX 159693576 159693712 -2906218 + HAL1 LINE L1 1009 1155 -1352 1216 143 67 0 chrX 159693727 159693937 -2905993 - Tigger2 DNA MER2_type -1 2717 2494 2311 124 186 104 chrX 159693940 159694348 -2905582 - Tigger2 DNA MER2_type -2054 664 291 2108 54 8 4 chrX 159694348 159694607 -2905323 - AluY SINE Alu -16 295 36 2311 124 186 104 chrX 159694607 159694618 -2905312 - Tigger2 DNA MER2_type -2427 291 282 2207 108 0 0 chrX 159694618 159694904 -2905026 - AluSg SINE Alu -24 286 1 2311 124 186 104 chrX 159694904 159695097 -2904833 - Tigger2 DNA MER2_type -2436 282 1 388 140 187 47 chrX 159695188 159695295 -2904635 + MER21B LTR ERV1 329 450 -413 425 186 29 20 chrX 159695433 159695535 -2904395 + L1MA6 LINE L1 7 109 -6921 1414 162 37 57 chrX 159695834 159696131 -2903799 - AluJo SINE Alu -21 291 1 1256 259 22 5 chrX 159696171 159696584 -2903346 + L1M3f LINE L1 770 1189 -5139 11796 199 61 34 chrX 159696587 159698216 -2901714 + L1MA6 LINE L1 259 1694 -5412 1768 74 35 0 chrX 159698216 159698473 -2901457 + L1MA1 LINE L1 6037 6302 0 11796 199 61 34 chrX 159698473 159699970 -2899960 + L1MA6 LINE L1 1694 3150 -3956 779 74 41 8 chrX 159699939 159700060 -2899870 - L1PA2 LINE L1 -216 5939 5815 * 797 10 10 0 chrX 159700202 159700301 -2899629 - L1PA2 LINE L1 -312 5843 5744 2148 24 0 0 chrX 159700303 159700551 -2899379 + L1PA2 LINE L1 5906 6153 -2 14017 149 43 33 chrX 159700565 159700782 -2899148 + L1MA6 LINE L1 3136 3349 -3911 2074 104 14 0 chrX 159700782 159701069 -2898861 + AluSx SINE Alu 1 291 -21 14017 149 43 33 chrX 159701069 159701201 -2898729 + L1MA6 LINE L1 3349 3478 -3782 329 64 0 0 chrX 159701201 159701248 -2898682 - MADE1 DNA Mariner -33 47 1 14017 149 43 33 chrX 159701248 159702859 -2897071 + L1MA6 LINE L1 3478 5071 -2189 1886 147 23 7 chrX 159702859 159702984 -2896946 + AluSx SINE Alu 1 122 -190 243 0 0 0 chrX 159702984 159703011 -2896919 + (CA)n Simple_repeat Simple_repeat 2 28 0 1886 147 23 7 chrX 159703011 159703191 -2896739 + AluSx SINE Alu 122 311 -1 14017 149 43 33 chrX 159703191 159703964 -2895966 + L1MA6 LINE L1 5071 5834 -1426 2316 107 10 0 chrX 159703964 159704272 -2895658 + AluSx SINE Alu 1 311 -1 14017 149 43 33 chrX 159704272 159705570 -2894360 + L1MA6 LINE L1 5834 7258 -2 576 222 210 16 chrX 159705590 159705847 -2894083 + HAL1 LINE L1 1353 1659 -848 261 343 0 0 chrX 159706173 159706243 -2893687 - L2 LINE L2 -196 3076 3007 509 303 81 108 chrX 159706264 159706658 -2893272 - L2 LINE L2 -469 2845 2442 833 233 0 6 chrX 159706658 159706830 -2893100 + MIR SINE MIR 92 262 0 509 303 81 108 chrX 159706830 159707260 -2892670 - L2 LINE L2 -872 2442 1877 1377 198 84 45 chrX 159708505 159708884 -2891046 - MSTD LTR MaLR -2 394 1 308 258 32 76 chrX 159709512 159709679 -2890251 - MIR SINE MIR -65 143 32 1294 170 22 4 chrX 159709872 159710225 -2889705 + MSTA LTR MaLR 1 395 -33 485 259 18 0 chrX 159711272 159711384 -2888546 + MER58 DNA MER1_type 2 115 -100 214 182 23 0 chrX 159711384 159711428 -2888502 + GA-rich Low_complexity Low_complexity 1 45 0 226 306 0 0 chrX 159711449 159711511 -2888419 + MER58 DNA MER1_type 2359 2420 0 335 231 104 30 chrX 159711537 159711671 -2888259 - MLT1L LTR MaLR -24 591 448 749 278 34 52 chrX 159711673 159712275 -2887655 - L1MC/D LINE L1 -758 5388 5013 28 29 0 0 chrX 159712614 159712649 -2887281 + AT_rich Low_complexity Low_complexity 1 35 0 231 36 0 0 chrX 159712859 159712887 -2887043 + (TG)n Simple_repeat Simple_repeat 1 28 0 1298 98 0 0 chrX 159712959 159713123 -2886807 + AluSg/x SINE Alu 132 295 -17 259 224 0 0 chrX 159713124 159713182 -2886748 - L1MC/D LINE L1 -1936 5872 5815 551 169 34 14 chrX 159713228 159713376 -2886554 + L1M4 LINE L1 4980 5130 -1016 * 2659 41 20 7 chrX 159713369 159713917 -2886013 + L1PA4 LINE L1 4195 5877 -278 577 347 57 20 chrX 159713941 159714047 -2885883 + L2 LINE L2 404 505 -2809 386 19 0 19 chrX 159714047 159714099 -2885831 + (TC)n Simple_repeat Simple_repeat 2 52 0 1821 137 32 14 chrX 159714099 159714377 -2885553 - AluJo SINE Alu -29 283 1 577 347 57 20 chrX 159714377 159714514 -2885416 + L2 LINE L2 504 657 -2657 318 310 11 0 chrX 159714546 159714633 -2885297 - L2 LINE L2 -2914 400 313 2082 214 165 19 chrX 159714699 159715329 -2884601 - MER72 LTR ERV1 0 722 1 1132 179 10 0 chrX 159715440 159715647 -2884283 - MER2 DNA MER2_type -135 210 2 189 0 0 0 chrX 159716355 159716376 -2883554 + (TC)n Simple_repeat Simple_repeat 1 21 0 362 231 31 31 chrX 159716606 159716736 -2883194 - HAL1 LINE L1 -105 2402 2273 344 305 68 59 chrX 159716813 159717049 -2882881 - HAL1b LINE L1 -383 965 728 1461 101 29 0 chrX 159717209 159717447 -2882483 + L1MA5 LINE L1 5923 6167 -133 1723 147 0 36 chrX 159717568 159717847 -2882083 - AluJb SINE Alu -15 297 29 328 306 0 28 chrX 159717901 159718009 -2881921 - HAL1 LINE L1 -753 1754 1650 2277 89 0 7 chrX 159718054 159718345 -2881585 + AluSx SINE Alu 2 290 -22 1749 108 21 0 chrX 159719059 159719300 -2880630 - AluSg/x SINE Alu -1 311 66 327 268 232 7 chrX 159720235 159720377 -2879553 + L2 LINE L2 2174 2347 -967 5964 139 20 31 chrX 159720392 159721475 -2878455 + MER11C LTR ERVK 1 1071 0 187 196 43 0 chrX 159721475 159721510 -2878420 + MIR SINE MIR 207 246 -16 1769 119 92 41 chrX 159721510 159721805 -2878125 + AluJo SINE Alu 1 310 -2 267 264 0 0 chrX 159723387 159723424 -2876506 + (TA)n Simple_repeat Simple_repeat 1 40 -32 2143 144 37 11 chrX 159723424 159723800 -2876130 - MLT1B LTR MaLR 0 390 5 267 264 0 0 chrX 159723800 159723834 -2876096 + (TA)n Simple_repeat Simple_repeat 39 72 0 242 260 21 0 chrX 159723844 159723952 -2875978 + L1ME3A LINE L1 5366 5476 -688 235 246 16 0 chrX 159724068 159724129 -2875801 + L1MDa LINE L1 34 95 -6445 2474 57 3 0 chrX 159724129 159724427 -2875503 + AluY SINE Alu 1 299 -12 569 278 48 9 chrX 159725300 159725527 -2874403 + L1ME3A LINE L1 5721 5956 -214 232 407 0 0 chrX 159725760 159725910 -2874020 - L2 LINE L2 -733 2581 2432 1029 228 117 0 chrX 159725911 159726270 -2873660 + L1M1 LINE L1 2535 2935 -4630 414 139 0 0 chrX 159726264 159726336 -2873594 + L1MA8 LINE L1 6026 6097 -194 * 278 167 60 0 chrX 159726337 159726421 -2873509 + L1MA8 LINE L1 6203 6291 0 611 158 222 36 chrX 159726551 159726729 -2873201 + L1ME LINE L1 5428 5656 -514 1820 160 62 19 chrX 159726729 159726906 -2873024 + MLT1B LTR MaLR 1 169 -221 2263 93 3 3 chrX 159726906 159727206 -2872724 + AluSc SINE Alu 1 300 -9 1820 160 62 19 chrX 159727206 159727402 -2872528 + MLT1B LTR MaLR 169 390 0 611 158 222 36 chrX 159727402 159727444 -2872486 + L1ME LINE L1 5656 5689 -481 390 181 12 0 chrX 159727464 159727547 -2872383 - LTR54 LTR ERV1 0 510 427 649 279 75 20 chrX 159727585 159727839 -2872091 - MER57B LTR ERV1 -164 270 3 200 254 127 18 chrX 159728194 159728249 -2871681 + L2 LINE L2 3212 3272 0 817 224 16 20 chrX 159728324 159728569 -2871361 - L1MC4 LINE L1 -2 8040 7797 8797 145 27 16 chrX 159729454 159729718 -2870212 - L1M1 LINE L1 -676 5624 5365 2668 45 0 0 chrX 159729718 159730027 -2869903 - AluY SINE Alu -2 309 1 8797 145 27 16 chrX 159730027 159731795 -2868135 - L1M1 LINE L1 -935 5365 3562 * 42545 38 0 0 chrX 159731789 159737935 -2861995 - L1PA3 LINE L1 -1 6154 7 361 247 169 26 chrX 159737941 159738249 -2861681 - L1MEc LINE L1 -4410 2197 1846 * 1746 239 94 46 chrX 159738235 159738710 -2861220 - L1M4 LINE L1 -870 5276 4740 802 201 62 34 chrX 159738710 159738919 -2861011 + MER58C DNA MER1_type 1 215 0 1746 239 94 46 chrX 159738919 159739294 -2860636 - L1M4 LINE L1 -1406 4740 4385 397 263 56 0 chrX 159739294 159739473 -2860457 - L1MEc LINE L1 -2699 3727 3539 495 80 0 0 chrX 159739484 159739559 -2860371 - L1PA3 LINE L1 -91 6064 5990 327 0 0 0 chrX 159739559 159739595 -2860335 + L1PA2 LINE L1 6111 6153 -2 978 231 45 32 chrX 159739690 159740157 -2859773 - L1MEc LINE L1 -2947 3479 3007 856 253 57 28 chrX 159740339 159740869 -2859061 - L1MEc LINE L1 -3372 3054 2510 412 247 204 21 chrX 159740861 159741177 -2858753 - L1MEc LINE L1 -4598 1926 1669 * 369 0 0 0 chrX 159741177 159741218 -2858712 + (TG)n Simple_repeat Simple_repeat 2 42 0 412 247 204 21 chrX 159741218 159741514 -2858416 - L1MEc LINE L1 -4855 1669 1078 * 1668 201 10 33 chrX 159741506 159741900 -2858030 - L1M4 LINE L1 -995 5151 4767 1983 151 10 0 chrX 159742013 159742318 -2857612 - AluJo SINE Alu -4 308 1 418 150 0 0 chrX 159742810 159742870 -2857060 + AluJ/FLAM SINE Alu 1 60 -252 299 232 85 0 chrX 159743190 159743272 -2856658 + MER58A DNA MER1_type 1 89 -18 865 267 94 0 chrX 159744337 159744625 -2855305 - HAL1 LINE L1 -607 1900 1586 622 153 0 18 chrX 159744658 159744769 -2855161 - HERVL74 LTR ERVL -3665 2020 1912 610 226 32 0 chrX 159744998 159745122 -2854808 - MIR SINE MIR -95 167 40 218 298 150 61 chrX 159748687 159749066 -2850864 - L2 LINE L2 -2727 587 175 828 280 131 33 chrX 159749068 159749465 -2850465 - L2 LINE L2 -2 3311 2876 2757 261 173 33 chrX 159749491 159750524 -2849406 + L2 LINE L2 1236 2436 -878 1922 166 0 0 chrX 159750524 159750826 -2849104 + AluSx SINE Alu 1 302 -10 2757 261 173 33 chrX 159750826 159750902 -2849028 + L2 LINE L2 2436 2500 -814 2332 107 48 22 chrX 159750914 159751269 -2848661 - THE1B LTR MaLR 0 364 1 4804 159 32 61 chrX 159751269 159753008 -2846922 - THE1B-int LTR MaLR 0 1637 6 5058 96 1 0 chrX 159751953 159752659 -2847271 + THE1-int LTR MaLR 369 1075 -505 1164 97 10 46 chrX 159753013 159753208 -2846722 - THE1B LTR MaLR 0 364 177 1122 113 6 6 chrX 159753208 159753367 -2846563 - AluSc SINE Alu -9 300 142 295 53 0 0 chrX 159753370 159753408 -2846522 - THE1B LTR MaLR -337 38 1 801 19 0 0 chrX 159753411 159753519 -2846411 - THE1B-int LTR MaLR -5 1575 1468 1008 103 0 0 chrX 159753519 159753645 -2846285 - AluSg SINE Alu -184 126 1 986 95 101 0 chrX 159753648 159753796 -2846134 - THE1B LTR MaLR -183 181 19 1409 286 72 26 chrX 159754085 159754824 -2845106 + L2 LINE L2 2546 3309 -4 555 292 20 5 chrX 159754931 159755126 -2844804 - L2 LINE L2 -656 2658 2461 6768 29 0 0 chrX 159755158 159755986 -2843944 - L1PA5 LINE L1 0 6154 5327 1133 258 86 51 chrX 159755998 159756446 -2843484 + L1M1 LINE L1 2786 3271 -4294 1834 178 0 7 chrX 159756446 159756738 -2843192 + AluJb SINE Alu 1 290 -22 1133 258 86 51 chrX 159756738 159757018 -2842912 + L1M1 LINE L1 3271 3540 -4025 447 291 56 41 chrX 159757772 159757968 -2841962 + L1MEc LINE L1 1615 1813 -4583 216 0 0 0 chrX 159758390 159758414 -2841516 + (A)n Simple_repeat Simple_repeat 1 24 0 4043 227 66 14 chrX 159758433 159759900 -2840030 + L1MA4 LINE L1 1251 2793 -4066 * 8672 166 33 57 chrX 159759894 159762000 -2837930 + L1MA4 LINE L1 4036 6090 -1475 2388 98 19 29 chrX 159762001 159762379 -2837551 + THE1C LTR MaLR 2 375 0 10091 99 45 40 chrX 159762379 159763951 -2835979 + THE1C-int LTR MaLR 1 1580 0 372 0 0 41 chrX 159763953 159764002 -2835928 + THE1C LTR MaLR 3 49 -326 1800 132 25 34 chrX 159764296 159764621 -2835309 + THE1C LTR MaLR 54 375 0 4529 146 10 4 chrX 159764621 159765990 -2833940 + L1MA4 LINE L1 6086 7460 -259 4007 144 21 46 chrX 159765990 159766733 -2833197 - LTR5 LTR ERVK 0 969 245 2854 48 20 0 chrX 159766733 159767088 -2832842 - L1PA5 LINE L1 -1 6153 5792 1610 130 4 0 chrX 159767091 159767330 -2832600 - LTR5 LTR ERVK -729 240 1 1649 104 0 8 chrX 159767332 159767591 -2832339 + L1MA4 LINE L1 7457 7713 -6 1666 247 60 32 chrX 159768732 159769485 -2830445 + L1ME3 LINE L1 4481 5254 -892 1458 243 191 10 chrX 159769569 159770170 -2829760 + L1ME3 LINE L1 5258 5967 -203 282 210 57 73 chrX 159770220 159770344 -2829586 + L1ME3 LINE L1 5961 6082 -80 217 314 0 0 chrX 159770434 159770485 -2829445 - L2 LINE L2 -1154 2160 2110 746 176 0 23 chrX 159770503 159770634 -2829296 - L2 LINE L2 0 3313 3186 249 293 0 13 chrX 159770641 159770716 -2829214 - L2 LINE L2 -1307 2007 1934 25 0 0 0 chrX 159770955 159770980 -2828950 + AT_rich Low_complexity Low_complexity 1 25 0 351 228 50 50 chrX 159771126 159771306 -2828624 - L1ME4a LINE L1 -237 5884 5705 472 246 86 105 chrX 159771394 159771810 -2828120 - L1ME4a LINE L1 -812 5334 4918 219 295 100 105 chrX 159772597 159772787 -2827143 - L2 LINE L2 -527 2787 2599 343 235 99 12 chrX 159773478 159773559 -2826371 - L2 LINE L2 -18 3295 3208 1764 151 20 33 chrX 159773868 159774167 -2825763 + AluJo SINE Alu 1 295 -17 2746 229 35 22 chrX 159824967 159825681 -2774249 - L1ME4a LINE L1 -1819 4327 3488 2183 138 0 0 chrX 159825681 159825992 -2773938 - AluSq SINE Alu -2 311 1 2746 229 35 22 chrX 159825992 159826049 -2773881 - L1ME4a LINE L1 -2658 3488 3433 2229 116 7 7 chrX 159826767 159827077 -2772853 - AluSx SINE Alu -2 310 1 276 215 28 6 chrX 159827280 159827391 -2772539 - MER20 DNA MER1_type -2 217 44 1159 160 10 25 chrX 159827630 159827830 -2772100 - AluJo SINE Alu -115 197 1 626 239 44 85 chrX 159827830 159828006 -2771924 + L1M4 LINE L1 4323 4484 -1662 2262 121 0 6 chrX 159828006 159828320 -2771610 + AluSx SINE Alu 1 312 0 626 239 44 85 chrX 159828320 159828436 -2771494 + L1M4 LINE L1 4484 4603 -1543 2570 59 0 10 chrX 159828448 159828755 -2771175 + AluY SINE Alu 1 304 -7 2071 80 49 0 chrX 159828865 159829128 -2770802 - AluSx SINE Alu -36 276 1 448 296 64 0 chrX 159829133 159829305 -2770625 - HERVL-B1 LTR ERVL -5471 183 1 1398 235 107 35 chrX 159829305 159829354 -2770576 - MLT2B1 LTR ERVL 0 520 476 276 30 0 0 chrX 159829354 159829387 -2770543 + (CA)n Simple_repeat Simple_repeat 2 34 0 1398 235 107 35 chrX 159829387 159829822 -2770108 - MLT2B1 LTR ERVL -44 476 1 1580 115 24 4 chrX 159829822 159830074 -2769856 + L1MB4 LINE L1 5924 6180 0 523 285 79 8 chrX 159830374 159830641 -2769289 + L1MEd LINE L1 592 877 -5242 834 199 20 0 chrX 159830686 159830882 -2769048 + L1 LINE L1 4292 4491 -1655 293 271 41 0 chrX 159830940 159831062 -2768868 + L1 LINE L1 4464 4590 -1556 3696 245 44 30 chrX 159831171 159831428 -2768502 - L1MEc LINE L1 -2401 3814 3562 2472 97 0 0 chrX 159831428 159831739 -2768191 - AluSq SINE Alu -2 311 1 3696 245 44 30 chrX 159831739 159832162 -2767768 - L1MEc LINE L1 -2653 3562 3146 2284 107 0 3 chrX 159832162 159832460 -2767470 - AluSx SINE Alu -15 297 1 3696 245 44 30 chrX 159832460 159833267 -2766663 - L1MEc LINE L1 -3069 3146 2287 2528 88 0 0 chrX 159833267 159833575 -2766355 - AluSc SINE Alu -1 308 1 3696 245 44 30 chrX 159833575 159833869 -2766061 - L1MEc LINE L1 -3928 2287 1999 226 286 126 8 chrX 159835519 159835638 -2764292 - MLT1G3 LTR MaLR -8 534 402 392 193 0 83 chrX 159835683 159835792 -2764138 - MLT1G3 LTR MaLR -289 241 142 207 250 260 0 chrX 159835813 159835917 -2764013 + L2 LINE L2 3142 3272 0 184 245 57 0 chrX 159835929 159835982 -2763948 - MIR3 SINE MIR -34 174 119 1218 221 32 14 chrX 159836368 159836649 -2763281 - L1ME1 LINE L1 -4 6162 5877 292 236 0 26 chrX 159837031 159837125 -2762805 + MIR SINE MIR 64 154 -54 457 156 8 102 chrX 159838438 159838566 -2761364 - L1MC5 LINE L1 -695 7266 7151 302 176 15 29 chrX 159838566 159838634 -2761296 + L2 LINE L2 1840 1906 -1408 222 173 58 0 chrX 159838631 159838683 -2761247 + MIR SINE MIR 158 212 -50 * 225 313 36 36 chrX 159838791 159838903 -2761027 + LTR16C LTR ERVL 71 182 -309 1257 233 199 0 chrX 159838918 159839386 -2760544 - L2 LINE L2 -358 2956 2396 239 232 105 11 chrX 159839616 159839711 -2760219 - L1ME1 LINE L1 -378 5784 5681 228 213 0 53 chrX 159839767 159839842 -2760088 - L1ME1 LINE L1 -2427 5381 5311 217 291 0 18 chrX 159841325 159841380 -2758550 - L2 LINE L2 -9 3304 3251 234 167 0 0 chrX 159841778 159841814 -2758116 + MER74C LTR ERVL 360 395 -65 2291 91 3 0 chrX 159844348 159844662 -2755268 + AluSp SINE Alu 1 315 0 4001 201 56 17 chrX 159844667 159846043 -2753887 - L1MD2 LINE L1 -263 6096 4653 1192 138 0 0 chrX 159846314 159846481 -2753449 - FRAM SINE Alu -10 166 1 2478 87 0 3 chrX 159846950 159847262 -2752668 + AluSx SINE Alu 1 311 -1 1967 122 0 0 chrX 159847602 159847857 -2752073 - AluJb SINE Alu -57 255 1 1922 153 0 3 chrX 159848202 159848521 -2751409 - AluJo SINE Alu 0 318 1 599 273 69 17 chrX 159848583 159848814 -2751116 - HERV16 LTR ERVL -1354 3642 3400 237 33 0 0 chrX 159848849 159848879 -2751051 + (TCC)n Simple_repeat Simple_repeat 1 30 0 189 213 0 0 chrX 159848979 159849026 -2750904 - L2 LINE L2 -1203 2111 2065 457 242 68 0 chrX 159849088 159849220 -2750710 - L1ME3A LINE L1 -332 5838 5698 * 1195 196 146 99 chrX 159849215 159849660 -2750270 + L1MC4 LINE L1 7431 7896 -146 24 0 0 0 chrX 159849660 159849684 -2750246 + AT_rich Low_complexity Low_complexity 1 24 0 357 268 31 72 chrX 159849713 159849907 -2750023 - L1MC4 LINE L1 -31 8011 7826 * 531 207 114 11 chrX 159849901 159850085 -2749845 - L1M4 LINE L1 -809 5337 5143 333 264 131 13 chrX 159850228 159850428 -2749502 - L1M4 LINE L1 -1233 4913 4695 544 204 155 14 chrX 159850639 159850781 -2749149 - MER46C DNA MER2_type -21 317 156 258 186 43 71 chrX 159850786 159850856 -2749074 - AluYb8 SINE Alu -5 303 236 * 271 175 0 0 chrX 159850833 159850873 -2749057 - FRAM/FAM SINE Alu -129 37 1 303 121 273 0 chrX 159850932 159850998 -2748932 - MER46C DNA MER2_type -251 87 4 2367 87 3 10 chrX 159852793 159853093 -2746837 - AluSx SINE Alu -14 298 1 570 248 11 26 chrX 159853679 159853883 -2746047 + L1M1 LINE L1 5294 5492 -751 227 196 78 0 chrX 159853945 159853996 -2745934 - L2 LINE L2 -3 3310 3256 1294 233 124 76 chrX 159854165 159855329 -2744601 - L1ME3A LINE L1 -178 5992 4769 240 298 0 0 chrX 159855367 159855424 -2744506 - L1ME3A LINE L1 -2034 4112 4056 836 109 0 0 chrX 159855424 159855534 -2744396 + FLAM_C SINE Alu 1 110 -33 1200 271 112 12 chrX 159855553 159856037 -2743893 - L1ME3A LINE L1 -2081 4065 3534 270 0 0 0 chrX 159856048 159856078 -2743852 + (TG)n Simple_repeat Simple_repeat 2 31 0 2585 74 0 0 chrX 159856186 159856498 -2743432 - AluSx SINE Alu 0 312 1 346 169 11 180 chrX 159857496 159857674 -2742256 - MER112 DNA MER1_type -105 155 8 202 408 13 0 chrX 159858320 159858472 -2741458 - L2 LINE L2 -446 2868 2715 187 354 25 0 chrX 159858570 159858649 -2741281 - L2 LINE L2 -841 2473 2393 40 21 0 0 chrX 159859757 159859804 -2740126 + AT_rich Low_complexity Low_complexity 1 47 0 1000 204 0 28 chrX 159860247 159860463 -2739467 - MER6B DNA MER2_type 0 210 1 827 263 230 17 chrX 159862422 159862843 -2737087 - L1MC/D LINE L1 -752 5394 5197 751 123 26 0 chrX 159862950 159863064 -2736866 - AluJo SINE Alu -176 136 20 273 305 123 30 chrX 159863936 159864270 -2735660 + L2 LINE L2 2034 2398 -916 1988 106 56 3 chrX 159864321 159864605 -2735325 + AluSx SINE Alu 1 299 -13 624 283 51 25 chrX 159864629 159864866 -2735064 + L3 LINE CR1 795 1037 -540 221 295 64 58 chrX 159864903 159865059 -2734871 + L3 LINE CR1 1175 1331 -246 394 221 134 71 chrX 159865459 159865586 -2734344 + LTR67 LTR ERVL 10 144 -413 1421 105 1 0 chrX 159865846 159866087 -2733843 + L1MA4 LINE L1 5666 5906 -269 479 283 75 9 chrX 159866068 159866294 -2733636 + L1MC4a LINE L1 5814 6054 -1754 * 25 0 0 0 chrX 159866323 159866348 -2733582 + AT_rich Low_complexity Low_complexity 1 25 0 776 258 187 8 chrX 159866493 159867016 -2732914 + L1MC4a LINE L1 5351 6006 -1802 619 212 38 33 chrX 159867043 159867227 -2732703 + L1MCc LINE L1 26 210 -6213 582 181 26 26 chrX 159867426 159867542 -2732388 - MER20 DNA MER1_type 0 219 104 2401 119 30 25 chrX 159867557 159867918 -2732012 + THE1B LTR MaLR 2 364 0 2004 116 23 78 chrX 159867923 159867994 -2731936 - THE1C LTR MaLR 0 375 302 2412 98 0 0 chrX 159867994 159868301 -2731629 + AluSg SINE Alu 1 307 -3 2004 116 23 78 chrX 159868301 159868625 -2731305 - THE1C LTR MaLR -73 302 2 1255 187 14 28 chrX 159868656 159868888 -2731042 + L1M4 LINE L1 2795 3024 -3122 1758 129 126 3 chrX 159868888 159869214 -2730716 - MER47A DNA MER2_type 0 366 1 1255 187 14 28 chrX 159869214 159869265 -2730665 + L1M4 LINE L1 3024 3074 -3072 1233 206 8 8 chrX 159869302 159869555 -2730375 + L1ME1 LINE L1 5866 6118 -48 254 153 119 0 chrX 159869561 159869620 -2730310 + LTR66 LTR ERVL 374 439 -171 1278 217 44 34 chrX 159869773 159869798 -2730132 + L1MCc LINE L1 2283 2306 -4816 216 0 0 0 chrX 159869798 159869822 -2730108 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1278 217 44 34 chrX 159869822 159870179 -2729751 + L1MCc LINE L1 2306 2669 -4453 2266 184 13 56 chrX 159870287 159870334 -2729596 - L1M4 LINE L1 -908 5238 5191 2098 120 27 0 chrX 159870334 159870416 -2729514 - AluSq SINE Alu -13 300 222 189 0 0 0 chrX 159870416 159870437 -2729493 + (TCTCTG)n Simple_repeat Simple_repeat 3 23 0 2098 120 27 0 chrX 159870437 159870646 -2729284 - AluSq SINE Alu -91 222 1 2266 184 13 56 chrX 159870646 159870722 -2729208 - L1M4 LINE L1 -955 5191 5113 1370 171 108 21 chrX 159870722 159871008 -2728922 - AluJo SINE Alu 0 312 2 2266 184 13 56 chrX 159871008 159871416 -2728514 - L1M4 LINE L1 -1033 5113 4729 2729 217 63 12 chrX 159871427 159872095 -2727835 - L1M4 LINE L1 -1828 4318 3617 780 191 0 0 chrX 159872126 159872257 -2727673 - FLAM_C SINE Alu -2 131 1 1686 310 95 25 chrX 159872975 159874069 -2725861 + MERVL LTR ERVL 2403 3614 -2040 457 240 20 48 chrX 159874221 159874623 -2725307 + MERVL LTR ERVL 4188 4641 -871 400 317 7 0 chrX 159874699 159874844 -2725086 + MIR SINE MIR 83 228 -34 47 67 0 0 chrX 159875497 159875586 -2724344 + GC_rich Low_complexity Low_complexity 1 89 0 30 93 0 0 chrX 159875734 159875820 -2724110 + GC_rich Low_complexity Low_complexity 1 86 0 360 283 101 18 chrX 159878379 159878598 -2721332 - L1MC4a LINE L1 -1875 5933 5697 432 239 53 0 chrX 159878614 159878727 -2721203 - MIR SINE MIR -1 261 143 481 250 80 27 chrX 159878740 159878928 -2721002 - L1MC4a LINE L1 -881 5265 5068 1348 147 13 22 chrX 159878938 159879162 -2720768 - AluJb SINE Alu -90 222 1 535 262 21 11 chrX 159879185 159879372 -2720558 - L1MC4a LINE L1 -1112 5034 4846 1329 88 0 18 chrX 159879376 159879547 -2720383 + AluSq SINE Alu 5 172 -141 335 309 41 92 chrX 159879754 159880048 -2719882 + L2 LINE L2 2994 3272 0 393 160 27 0 chrX 159880700 159880775 -2719155 + L2 LINE L2 1629 1705 -1609 226 265 72 24 chrX 159881859 159881942 -2717988 - MER20B DNA MER1_type -696 87 1 675 254 32 11 chrX 159882102 159882291 -2717639 + MIR SINE MIR 47 239 -23 257 286 156 36 chrX 159882369 159882754 -2717176 - L1MC4a LINE L1 -1927 4219 3789 243 0 0 0 chrX 159883777 159883804 -2716126 + (TC)n Simple_repeat Simple_repeat 2 28 0 243 88 0 0 chrX 159883806 159883840 -2716090 + (CA)n Simple_repeat Simple_repeat 1 34 0 430 280 121 29 chrX 159884778 159884985 -2714945 - MIR SINE MIR -1 261 36 250 248 128 16 chrX 159885228 159885353 -2714577 + L2 LINE L2 3159 3297 -16 263 241 46 35 chrX 159885380 159885467 -2714463 - L1MC4 LINE L1 -1341 6701 6614 216 0 0 0 chrX 159885467 159885491 -2714439 + (TA)n Simple_repeat Simple_repeat 2 25 0 193 71 0 71 chrX 159887965 159888007 -2711923 + (TTTC)n Simple_repeat Simple_repeat 4 42 0 1668 133 74 0 chrX 159888172 159888442 -2711488 + MER7A DNA MER2_type 59 346 0 1012 214 39 63 chrX 159888445 159888523 -2711407 + L1MC5 LINE L1 6906 6984 -977 2053 41 0 4 chrX 159888523 159888767 -2711163 + AluY SINE Alu 68 310 -1 1012 214 39 63 chrX 159888767 159889020 -2710910 + L1MC5 LINE L1 6984 7229 -732 336 234 32 48 chrX 159889066 159889190 -2710740 + L1MC5 LINE L1 7393 7514 -447 * 4298 183 36 57 chrX 159889158 159889355 -2710575 + L1MA9 LINE L1 5168 5368 -944 2149 173 18 28 chrX 159889355 159889755 -2710175 - MSTD LTR MaLR 0 396 1 4298 183 36 57 chrX 159889755 159890696 -2709234 + L1MA9 LINE L1 5368 6274 -38 2283 98 7 10 chrX 159890984 159891291 -2708639 - AluSq SINE Alu -7 306 1 312 176 0 0 chrX 159891355 159891406 -2708524 - L2 LINE L2 -4 3268 3218 369 248 53 98 chrX 159891932 159892065 -2707865 + MIR3 SINE MIR 14 140 -68 2092 115 11 3 chrX 159892176 159892506 -2707424 + AluSx SINE Alu 1 312 0 189 235 188 24 chrX 159892549 159892634 -2707296 + MIR3 SINE MIR 90 188 -20 1685 154 64 82 chrX 159893012 159893389 -2706541 + MLT1B LTR MaLR 21 390 0 1815 271 104 47 chrX 159893425 159894475 -2705455 + L1MEc LINE L1 34 1143 -5253 325 244 12 12 chrX 159894495 159894581 -2705349 - MER5A DNA MER1_type -25 164 79 2009 254 90 35 chrX 159894639 159895664 -2704266 + L2 LINE L2 2188 3272 0 265 208 0 0 chrX 159895782 159895830 -2704100 - L2 LINE L2 -50 3222 3175 330 323 10 0 chrX 159896842 159896941 -2702989 + L2 LINE L2 3191 3290 -23 1037 223 71 10 chrX 159896971 159897281 -2702649 + L1MD2 LINE L1 6020 6348 -11 330 291 25 19 chrX 159897282 159897440 -2702490 + L1MEc LINE L1 2134 2292 -4104 186 310 69 0 chrX 159897440 159897527 -2702403 - L2 LINE L2 -20 3293 3201 223 273 0 0 chrX 159897889 159897944 -2701986 - MIR SINE MIR -61 147 93 371 234 81 9 chrX 159899265 159899376 -2700554 + L3 LINE CR1 676 794 -783 591 196 0 38 chrX 159899589 159899722 -2700208 + L1MB4 LINE L1 6051 6178 -2 495 258 47 47 chrX 159899913 159900146 -2699784 - MIR SINE MIR -16 246 14 261 173 19 0 chrX 159900513 159900565 -2699365 + L2 LINE L2 3220 3272 0 435 198 0 54 chrX 159900818 159900929 -2699001 - L1 LINE L1 -3630 2516 2412 3569 106 36 45 chrX 159900930 159901533 -2698397 + MER4A LTR ERV1 3 600 0 2940 98 183 12 chrX 159901535 159902033 -2697897 + MER4A-int LTR ERV1 1 583 -6015 304 118 0 118 chrX 159902086 159902171 -2697759 + MER4A-int LTR ERV1 751 825 -5773 1093 220 39 16 chrX 159902218 159902473 -2697457 + MER4A-int LTR ERV1 1845 2105 -4226 2416 123 20 0 chrX 159902473 159902823 -2697107 - LTR9 LTR ERV1 0 612 256 1164 91 0 0 chrX 159902812 159902966 -2696964 - LTR9 LTR ERV1 -458 154 1 * 349 241 148 9 chrX 159902966 159903074 -2696856 + MER4A-int LTR ERV1 2102 2224 -4107 * 7285 128 23 47 chrX 159903073 159904341 -2695589 + MER4A-int LTR ERV1 189 1506 -5252 2136 74 46 3 chrX 159904341 159904626 -2695304 - AluY SINE Alu -14 297 1 7285 128 23 47 chrX 159904626 159905307 -2694623 + MER4A-int LTR ERV1 1506 2202 -4556 288 0 0 0 chrX 159905307 159905338 -2694592 + MER4A-int LTR ERV1 705 735 -6023 18200 124 45 32 chrX 159906579 159909845 -2690085 + MER4A-int LTR ERV1 3291 6598 0 1155 90 39 7 chrX 159909848 159909966 -2689964 + MER4A LTR ERV1 1 114 -550 384 22 0 0 chrX 159909966 159910011 -2689919 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1155 90 39 7 chrX 159910011 159910139 -2689791 + MER4A LTR ERV1 114 321 -343 2060 266 72 32 chrX 159910248 159911063 -2688867 - L1M4 LINE L1 -1314 4720 3857 1927 145 10 22 chrX 159911063 159911374 -2688556 - AluSx SINE Alu -5 307 1 2060 266 72 32 chrX 159911374 159911537 -2688393 - L1M4 LINE L1 -2177 3857 3702 563 314 102 16 chrX 159911531 159911853 -2688077 - L1MEd LINE L1 -5318 801 452 * 906 105 80 43 chrX 159911889 159911985 -2687945 + L1MB7 LINE L1 5957 6063 -121 1594 162 126 36 chrX 159911985 159912319 -2687611 + MLT1A1 LTR MaLR 1 364 -1 906 105 80 43 chrX 159912319 159912384 -2687546 + L1MB7 LINE L1 6063 6124 -60 268 114 0 0 chrX 159912384 159912419 -2687511 - tRNA-Lys-AAG tRNA tRNA -38 38 4 270 204 0 0 chrX 159912425 159912479 -2687451 + L1MB8 LINE L1 6110 6163 -15 282 213 0 16 chrX 159912605 159912666 -2687264 + MLT1H LTR MaLR 94 153 -396 293 261 23 11 chrX 159912677 159912765 -2687165 - L1MEd LINE L1 -6020 99 11 6501 117 25 6 chrX 159912952 159914366 -2685564 - L1PB2 LINE L1 -1 6150 4718 914 254 0 0 chrX 159914361 159914581 -2685349 - L1M4 LINE L1 -3078 2956 2737 * 1440 259 43 24 chrX 159915436 159916161 -2683769 - L1ME LINE L1 -529 5641 4902 2026 296 88 41 chrX 159916285 159917205 -2682725 - L1M4 LINE L1 -4982 973 11 211 250 18 0 chrX 159917222 159917278 -2682652 - MER5A DNA MER1_type -119 70 14 440 204 0 87 chrX 159917763 159917866 -2682064 + MER81 DNA DNA 1 94 -20 3245 157 39 0 chrX 159917866 159918406 -2681524 + L1PA16 LINE L1 5606 6166 0 2297 92 0 0 chrX 159918476 159918790 -2681140 + AluY SINE Alu 1 314 0 648 160 0 18 chrX 159919534 159919760 -2680170 + AluSg SINE Alu 2 312 0 266 89 44 0 chrX 159919760 159919805 -2680125 + GA-rich Low_complexity Low_complexity 1 47 0 2082 118 10 0 chrX 159919805 159920094 -2679836 + AluSx SINE Alu 1 292 -20 195 42 0 0 chrX 159920387 159920411 -2679519 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 223 304 93 59 chrX 159920806 159921043 -2678887 + L2 LINE L2 2807 3051 -221 488 141 21 102 chrX 159921136 159921200 -2678730 + L1MB4 LINE L1 5810 5864 -305 2510 80 0 0 chrX 159921200 159921502 -2678428 + AluY SINE Alu 1 302 -9 488 141 21 102 chrX 159921502 159921563 -2678367 + L1MB4 LINE L1 5864 5928 -241 271 136 0 0 chrX 159921563 159921607 -2678323 - MLT2D LTR ERVL 0 515 472 1287 180 42 25 chrX 159921665 159921948 -2677982 - MLT2D LTR ERVL -126 288 1 530 112 112 31 chrX 159921948 159922046 -2677884 - ERVL-D LTR ERVL -7 5757 5652 2069 111 0 0 chrX 159922052 159922332 -2677598 - ERVL-D LTR ERVL -419 5345 5066 6966 141 38 13 chrX 159922332 159922654 -2677276 - ERVL-D LTR ERVL -1366 4398 4086 2403 86 0 0 chrX 159922654 159922945 -2676985 - AluSx SINE Alu -21 291 1 6966 141 38 13 chrX 159922945 159923695 -2676235 - ERVL-D LTR ERVL -1678 4086 3299 8053 175 27 1 chrX 159923699 159925019 -2674911 - ERVL-D LTR ERVL -3510 2254 901 290 186 0 0 chrX 159925119 159925162 -2674768 - Alu SINE Alu -258 44 2 1143 216 54 10 chrX 159925163 159925459 -2674471 - L1M4 LINE L1 -2313 3833 3525 2090 95 4 0 chrX 159925566 159925840 -2674090 + AluSx SINE Alu 30 304 -8 2209 92 26 7 chrX 159927245 159927551 -2672379 - AluSx SINE Alu 0 312 1 207 0 0 0 chrX 159928718 159928741 -2671189 + (TTC)n Simple_repeat Simple_repeat 2 24 0 212 167 0 0 chrX 159929272 159929308 -2670622 + CT-rich Low_complexity Low_complexity 2 37 0 5939 30 0 16 chrX 159931586 159932261 -2667669 + SVA Other Other 723 1386 0 1967 135 0 0 chrX 159932962 159933265 -2666665 + L1MA1 LINE L1 4648 4950 -1196 * 5381 90 48 38 chrX 159933259 159934072 -2665858 + L1MA1 LINE L1 5211 6034 -268 1985 129 37 7 chrX 159934072 159934367 -2665563 + AluSx SINE Alu 1 304 -8 5381 90 48 38 chrX 159934367 159934447 -2665483 + L1MA1 LINE L1 6034 6112 -190 2021 143 23 7 chrX 159934896 159935203 -2664727 - AluSx SINE Alu 0 312 1 592 153 0 41 chrX 159935810 159935908 -2664022 - AluJ/FLAM SINE Alu -217 95 2 2873 10 0 6 chrX 159936370 159936682 -2663248 - AluYb8 SINE Alu -4 314 5 2564 72 0 0 chrX 159937240 159937546 -2662384 + AluY SINE Alu 1 306 -5 572 173 48 10 chrX 159940637 159940741 -2659189 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3059 113 76 134 chrX 159940732 159941254 -2658676 + Tigger3(Golem) DNA MER2_type 2277 2739 -289 1977 82 57 7 chrX 159941254 159941534 -2658396 - AluSx SINE Alu -18 294 1 3059 113 76 134 chrX 159941534 159941799 -2658131 + Tigger3(Golem) DNA MER2_type 2739 3018 -10 991 190 30 46 chrX 159943000 159943263 -2656667 - Charlie5 DNA MER1_type 0 2618 2360 340 269 113 38 chrX 159943439 159943677 -2656253 + ERVL LTR ERVL 1697 1952 -3812 486 296 7 0 chrX 159943760 159943902 -2656028 + ERVL LTR ERVL 2135 2277 -3487 536 319 34 5 chrX 159944003 159944207 -2655723 + ERVL LTR ERVL 2806 3015 -2639 334 289 91 69 chrX 159944202 159944434 -2655496 + ERVL LTR ERVL 3224 3460 -2304 * 2972 156 34 9 chrX 159944444 159944969 -2654961 + L1MB7 LINE L1 5549 6086 -98 322 214 15 12 chrX 159946463 159946548 -2653382 + MLT1J LTR MaLR 108 256 -331 617 321 57 11 chrX 159946566 159946828 -2653102 - ERVL LTR ERVL -768 4996 4723 386 343 0 0 chrX 159946898 159947032 -2652898 - ERVL LTR ERVL -3184 2580 2447 2360 245 56 9 chrX 159947052 159947604 -2652326 - MLT1G LTR MaLR -11 579 2 2858 25 0 0 chrX 159947607 159947923 -2652007 + AluYb8 SINE Alu 1 316 -2 412 254 24 16 chrX 159948053 159948179 -2651751 - MLT1G LTR MaLR -462 128 2 2430 89 0 0 chrX 159948182 159948497 -2651433 + AluYb8 SINE Alu 1 315 -3 928 276 12 16 chrX 159948506 159948752 -2651178 - ERVL LTR ERVL -3316 2448 2204 1624 181 38 10 chrX 159948752 159949045 -2650885 - AluJo SINE Alu -11 301 1 2418 90 0 0 chrX 159949066 159949365 -2650565 - AluSx SINE Alu -13 299 1 718 276 118 31 chrX 159949852 159950308 -2649622 - L1M4 LINE L1 -1164 4982 4487 4639 156 34 29 chrX 159950326 159950816 -2649114 - L1MA9 LINE L1 -22 6290 5804 2227 102 83 71 chrX 159950816 159950863 -2649067 - MSTA LTR MaLR 0 428 383 2222 102 7 0 chrX 159950863 159951156 -2648774 + AluSg SINE Alu 1 295 -15 2227 102 83 71 chrX 159951156 159951531 -2648399 - MSTA LTR MaLR -45 383 1 4639 156 34 29 chrX 159951531 159952502 -2647428 - L1MA9 LINE L1 -508 5804 4738 7969 188 47 63 chrX 159952570 159952988 -2646942 - L1M4 LINE L1 -1244 4902 4479 729 136 39 13 chrX 159952988 159953142 -2646788 - L1MA7 LINE L1 0 6291 6134 7969 188 47 63 chrX 159953142 159953541 -2646389 - L1M4 LINE L1 -1667 4479 4075 1743 176 10 33 chrX 159953541 159953848 -2646082 - AluJo SINE Alu -12 300 1 7969 188 47 63 chrX 159953848 159954049 -2645881 - L1M4 LINE L1 -2071 4075 3872 2323 105 0 0 chrX 159954049 159954345 -2645585 - AluSx SINE Alu -16 296 1 7969 188 47 63 chrX 159954345 159955126 -2644804 - L1M4 LINE L1 -2274 3872 3783 674 129 17 0 chrX 159955126 159955242 -2644688 - L1PA14 LINE L1 -2 6159 6042 7969 188 47 63 chrX 159955242 159955942 -2643988 - L1M4 LINE L1 -2363 3783 3073 5861 94 40 13 chrX 159955948 159956802 -2643128 - L1MA2 LINE L1 0 7723 6847 5864 93 10 2 chrX 159956810 159957620 -2642310 - L1PA13 LINE L1 0 6163 5348 4778 172 5 17 chrX 159957621 159958882 -2641048 - L1MA2 LINE L1 -749 6816 5643 614 183 70 0 chrX 159958880 159958995 -2640935 - L1MA2 LINE L1 -6195 1370 1248 * 681 274 132 0 chrX 159959213 159959432 -2640498 - MIR SINE MIR 0 262 15 237 125 73 59 chrX 159959434 159959502 -2640428 - L1MC4 LINE L1 -1337 6985 2007 276 338 187 4 chrX 159959688 159959913 -2640017 + L2 LINE L2 1946 2211 -1103 344 248 66 44 chrX 159960018 159960155 -2639775 + L2 LINE L2 1221 1360 -1954 641 181 0 45 chrX 159962326 159962459 -2637471 + MER3 DNA MER1_type 83 209 0 311 263 38 0 chrX 159962603 159962683 -2637247 - L2 LINE L2 -40 3273 3191 239 326 22 22 chrX 159962949 159963041 -2636889 + L2 LINE L2 3201 3292 -21 216 0 0 0 chrX 159964156 159964180 -2635750 + (T)n Simple_repeat Simple_repeat 1 24 0 205 246 77 0 chrX 159965639 159965704 -2634226 + L3b LINE CR1 1271 1340 -243 2505 55 0 23 chrX 159965786 159966095 -2633835 + AluY SINE Alu 1 302 -9 1103 224 100 7 chrX 159966727 159967192 -2632738 - L1MC3 LINE L1 -227 6132 5678 4360 171 45 13 chrX 159967217 159967669 -2632261 - L1MB4 LINE L1 -213 5967 5531 2399 99 0 0 chrX 159967669 159967973 -2631957 - AluSx SINE Alu -8 304 1 4360 171 45 13 chrX 159967973 159969036 -2630894 - L1MB4 LINE L1 -649 5531 4398 15822 30 0 0 chrX 159969047 159971653 -2628277 - L1PA3 LINE L1 0 6155 3550 1717 199 52 44 chrX 159971662 159971899 -2628031 - L1MC3 LINE L1 -689 5477 5243 2415 103 0 0 chrX 159971899 159972211 -2627719 + AluSx SINE Alu 1 312 0 1717 199 52 44 chrX 159972211 159972534 -2627396 - L1MC3 LINE L1 -923 5243 4915 4760 172 25 30 chrX 159972641 159972986 -2626944 + L1MB5 LINE L1 4639 4984 -1190 1928 144 3 10 chrX 159972986 159973277 -2626653 + AluJb SINE Alu 1 289 -23 4760 172 25 30 chrX 159973277 159974462 -2625468 + L1MB5 LINE L1 4984 6157 -17 608 162 0 0 chrX 159974643 159974754 -2625176 + MLT1B LTR MaLR 165 275 -115 511 194 0 0 chrX 159974792 159974890 -2625040 + AluJ/FRAM SINE Alu 215 312 0 2142 134 3 0 chrX 159974930 159975236 -2624694 + AluSx SINE Alu 1 307 -5 333 0 0 0 chrX 159975237 159975274 -2624656 + (CA)n Simple_repeat Simple_repeat 2 38 0 576 138 4 28 chrX 159975274 159975392 -2624538 + MLT1B LTR MaLR 266 611 -15 536 273 40 38 chrX 159975556 159975767 -2624163 + L1MEc LINE L1 2113 2287 -3928 786 155 47 16 chrX 159975767 159975896 -2624034 + FLAM_A SINE Alu 1 133 0 536 273 40 38 chrX 159975896 159976082 -2623848 + L1MEc LINE L1 2287 2471 -3744 1708 74 5 19 chrX 159976082 159976298 -2623632 + AluY SINE Alu 1 213 -98 44112 48 4 1 chrX 159976424 159982561 -2617369 + L1PA5 LINE L1 3 6154 0 1840 246 161 34 chrX 159982563 159983634 -2616296 + L1MEc LINE L1 2743 3950 -2265 486 310 52 0 chrX 159983641 159983870 -2616060 + L1MEc LINE L1 4190 4430 -1785 242 157 0 0 chrX 159984095 159984146 -2615784 + AluSc SINE Alu 249 299 0 367 343 8 22 chrX 159984460 159984594 -2615336 + MLT1I LTR MaLR 91 222 -187 * 494 178 0 30 chrX 159984591 159984692 -2615238 + MLT1C LTR MaLR 369 466 -1 1249 246 60 31 chrX 159984704 159985344 -2614586 + L1MC4a LINE L1 6552 7437 -605 309 263 114 44 chrX 159985484 159985598 -2614332 - L2 LINE L2 -30 3242 3121 2367 41 0 0 chrX 159985725 159985994 -2613936 + AluY SINE Alu 30 298 -13 747 173 0 0 chrX 159985996 159986106 -2613824 - FLAM_A SINE Alu -27 115 6 321 319 43 63 chrX 159986113 159986371 -2613559 - L2 LINE L2 -237 3035 2783 412 104 26 174 chrX 159986386 159986501 -2613429 + MER5B DNA MER1_type 77 174 -4 613 226 113 27 chrX 159989374 159989595 -2610335 + LTR37B LTR ERV1 204 443 -25 976 115 16 88 chrX 159989807 159989858 -2610072 + L1MB1 LINE L1 5993 6046 -122 2142 113 0 23 chrX 159989858 159990158 -2609772 + AluSx SINE Alu 2 294 -18 976 115 16 88 chrX 159990158 159990288 -2609642 + L1MB1 LINE L1 6046 6161 -7 406 175 0 0 chrX 159990358 159990421 -2609509 + MER45B DNA AcHobo 247 309 -731 837 209 20 0 chrX 159990475 159990628 -2609302 - MER45B DNA AcHobo -884 156 1 792 212 165 7 chrX 159990628 159990865 -2609065 + MLT1F1 LTR MaLR 289 565 -2 806 310 43 31 chrX 159990868 159991220 -2608710 + MLT2F LTR ERVL 135 490 -173 * 1264 174 83 16 chrX 159991217 159991459 -2608471 - LTR42 LTR ERVL -237 258 1 248 184 20 0 chrX 159991569 159991618 -2608312 - Alu SINE Alu -166 136 87 992 80 0 0 chrX 159991627 159991752 -2608178 - L1PA8 LINE L1 -6 6166 6042 1915 121 0 0 chrX 159991752 159992017 -2607913 - AluJo SINE Alu -47 265 1 306 319 69 46 chrX 159992026 159992330 -2607600 - L1M4 LINE L1 -844 5302 4992 291 250 140 37 chrX 159992843 159992979 -2606951 - MLT1J LTR MaLR 0 511 362 * 375 287 44 14 chrX 159992978 159993174 -2606756 - MLT1L LTR MaLR -248 367 59 1417 235 279 13 chrX 159993241 159993912 -2606018 - L2 LINE L2 -3 3310 2465 509 112 99 0 chrX 159994019 159994140 -2605790 + L1MB2 LINE L1 5921 6092 -79 251 318 59 0 chrX 159994140 159994225 -2605705 - L2 LINE L2 -865 2449 2360 247 328 135 53 chrX 159994779 159995023 -2604907 - L2 LINE L2 -4 3268 3005 734 290 78 0 chrX 159997353 159997584 -2602346 - LTR16A LTR ERVL -201 249 1 1461 243 120 15 chrX 159997649 159998056 -2601874 + MLT1J2 LTR MaLR 1 450 0 191 290 0 16 chrX 159998121 159998183 -2601747 + MER5A DNA MER1_type 1 61 -128 804 168 8 0 chrX 159998804 159998923 -2601007 + FLAM_C SINE Alu 2 121 -22 6210 21 0 4 chrX 159999273 159999951 -2599979 - L1PA4 LINE L1 0 6155 5481 2351 80 0 13 chrX 159999951 160000252 -2599678 - AluSg SINE Alu -13 297 1 201 184 26 0 chrX 160000346 160000384 -2599546 + L2 LINE L2 3265 3303 -10 382 284 60 0 chrX 160000588 160000722 -2599208 + L1MC/D LINE L1 5661 5802 -2006 2724 32 3 0 chrX 160000974 160001284 -2598646 - AluY SINE Alu 0 311 1 480 212 110 34 chrX 160001798 160001944 -2597986 - L1ME4a LINE L1 -6 6115 5959 623 191 61 14 chrX 160002020 160002167 -2597763 + MER103 DNA DNA 8 161 -5 2132 118 0 0 chrX 160002296 160002585 -2597345 + AluSx SINE Alu 1 289 -23 1149 128 10 31 chrX 160052594 160052727 -2547203 - AluJo SINE Alu -121 191 62 1550 165 66 103 chrX 160052727 160053194 -2546736 + LTR7 LTR ERV1 1 450 0 1149 128 10 31 chrX 160053194 160053255 -2546675 - AluJo SINE Alu -250 62 1 304 114 171 29 chrX 160053255 160053325 -2546605 - LTR8 LTR ERV1 -74 617 538 251 167 0 0 chrX 160053294 160053336 -2546594 - LTR8A LTR ERV1 -111 616 575 * 2222 111 0 0 chrX 160053337 160053644 -2546286 - AluY SINE Alu -4 307 1 820 71 0 0 chrX 160053656 160053755 -2546175 - AluSx SINE Alu -20 290 192 1097 78 0 7 chrX 160053756 160053898 -2546032 - AluSx SINE Alu -172 141 1 2560 143 72 30 chrX 160053901 160054460 -2545470 - LTR8A LTR ERV1 -145 582 1 345 161 0 0 chrX 160054475 160054537 -2545393 + L1PB4 LINE L1 6095 6156 0 202 102 0 41 chrX 160055018 160055067 -2544863 + (TCCCC)n Simple_repeat Simple_repeat 3 49 0 193 361 56 37 chrX 160055895 160056111 -2543819 - L2 LINE L2 -529 2785 2566 208 198 12 12 chrX 160057971 160058052 -2541878 + G-rich Low_complexity Low_complexity 4 84 0 330 87 0 0 chrX 160058236 160058282 -2541648 + (CCG)n Simple_repeat Simple_repeat 1 46 0 34 0 0 0 chrX 160058307 160058341 -2541589 + GC_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chrX 160058475 160058499 -2541431 + (CCG)n Simple_repeat Simple_repeat 2 25 0 34 24 0 0 chrX 160058499 160058540 -2541390 + GC_rich Low_complexity Low_complexity 1 41 0 325 239 15 15 chrX 160058599 160058733 -2541197 + C-rich Low_complexity Low_complexity 2 135 0 27 49 0 0 chrX 160058738 160058779 -2541151 + GC_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chrX 160058847 160058875 -2541055 + GC_rich Low_complexity Low_complexity 1 28 0 27 87 0 0 chrX 160059048 160059117 -2540813 + GC_rich Low_complexity Low_complexity 1 69 0 22 99 0 0 chrX 160059141 160059212 -2540718 + GC_rich Low_complexity Low_complexity 1 71 0 180 77 0 0 chrX 160059427 160059453 -2540477 + (CA)n Simple_repeat Simple_repeat 1 26 0 181 80 20 80 chrX 160059466 160059516 -2540414 + (TCCCC)n Simple_repeat Simple_repeat 4 50 0 225 0 0 0 chrX 160059616 160059641 -2540289 + (CCCG)n Simple_repeat Simple_repeat 1 25 0 213 230 162 40 chrX 160060979 160061053 -2538877 - MIR SINE MIR -98 164 82 228 67 0 0 chrX 160063597 160063627 -2536303 + (CCCTG)n Simple_repeat Simple_repeat 3 32 0 247 180 60 0 chrX 160064843 160064893 -2535037 + (CGGGG)n Simple_repeat Simple_repeat 1 53 0 223 158 18 18 chrX 160065817 160065874 -2534056 + GA-rich Low_complexity Low_complexity 3 59 0 854 280 166 6 chrX 160067125 160067486 -2532444 - L2 LINE L2 -721 2593 2175 1240 229 54 38 chrX 160067766 160068190 -2531740 + L1MB3 LINE L1 5725 6155 -28 237 216 0 0 chrX 160068237 160068288 -2531642 - L2 LINE L2 -1484 1830 1780 254 276 66 0 chrX 160069212 160069288 -2530642 - L2 LINE L2 -49 3223 3143 557 301 11 6 chrX 160074728 160074904 -2525026 - MIR SINE MIR -78 184 8 285 337 20 10 chrX 160076820 160076921 -2523009 + L2 LINE L2 2260 2361 -953 180 149 64 43 chrX 160079989 160080036 -2519894 - L2 LINE L2 -3 3310 3263 318 325 34 0 chrX 160080568 160080685 -2519245 + L1MB2 LINE L1 6012 6132 -39 2020 129 7 10 chrX 160081832 160082141 -2517789 + AluSx SINE Alu 5 312 0 1664 148 72 0 chrX 160082346 160082643 -2517287 + AluJo SINE Alu 1 316 0 288 352 85 40 chrX 160082819 160083018 -2516912 - L3 LINE CR1 -1162 415 208 2265 75 0 7 chrX 160083126 160083420 -2516510 + AluY SINE Alu 1 292 -19 205 339 32 73 chrX 160083488 160083612 -2516318 - L3 LINE CR1 -1044 533 415 198 396 66 28 chrX 160083689 160083871 -2516059 - L3 LINE CR1 -1309 268 80 2188 81 47 7 chrX 160084081 160084379 -2515551 - AluSq SINE Alu -3 310 1 533 217 26 0 chrX 160084915 160085030 -2514900 + MSTD LTR MaLR 1 118 -278 2222 87 0 26 chrX 160086078 160086387 -2513543 + AluSq SINE Alu 1 301 -12 1791 130 0 80 chrX 160086661 160087000 -2512930 + AluJo SINE Alu 1 312 0 1331 147 118 29 chrX 160087661 160087906 -2512024 - AluJb SINE Alu -33 279 13 357 252 271 13 chrX 160088004 160088155 -2511775 + L1ME4a LINE L1 5512 5701 -420 2222 88 7 10 chrX 160088236 160088544 -2511386 + AluSq SINE Alu 1 307 -6 264 256 116 16 chrX 160088763 160088892 -2511038 + L1ME4a LINE L1 5980 6121 0 2207 104 3 0 chrX 160090568 160090866 -2509064 - AluSq SINE Alu -14 299 1 2270 109 0 0 chrX 160091356 160091659 -2508271 + AluSx SINE Alu 1 303 -9 441 123 0 0 chrX 160091698 160091763 -2508167 - Alu SINE Alu -12 299 235 2055 122 0 34 chrX 160091808 160092129 -2507801 + AluSx SINE Alu 1 310 -2 563 319 144 38 chrX 160092203 160092620 -2507310 - L1MC5 LINE L1 -78 7883 7423 21 0 0 0 chrX 160094331 160094352 -2505578 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrX 160094431 160094459 -2505471 + GC_rich Low_complexity Low_complexity 1 28 0 193 114 0 45 chrX 160094768 160094812 -2505118 + (CGGGG)n Simple_repeat Simple_repeat 5 46 0 212 239 15 15 chrX 160094952 160095019 -2504911 + C-rich Low_complexity Low_complexity 1 67 0 188 111 28 0 chrX 160095123 160095159 -2504771 + GA-rich Low_complexity Low_complexity 1 37 0 400 272 64 40 chrX 160098139 160098312 -2501618 + MIR SINE MIR 51 227 -35 1699 141 25 28 chrX 160098761 160099044 -2500886 - AluJo SINE Alu -30 282 1 1964 139 13 3 chrX 160100115 160100424 -2499506 - AluJb SINE Alu 0 312 1 2276 84 0 0 chrX 160100513 160100823 -2499107 + AluY SINE Alu 1 310 -1 890 145 0 0 chrX 160101251 160101382 -2498548 - FLAM_C SINE Alu 0 133 3 539 311 84 54 chrX 160101404 160102484 -2497446 - L1MEd LINE L1 -4734 1576 426 2222 101 0 0 chrX 160103088 160103374 -2496556 - AluSx SINE Alu -26 286 1 290 181 24 36 chrX 160103562 160103645 -2496285 + L2 LINE L2 3175 3256 -57 2194 112 0 13 chrX 160104494 160104808 -2495122 + AluSx SINE Alu 1 310 -2 4189 205 38 18 chrX 160104955 160106232 -2493698 - L1MB7 LINE L1 -2 6182 4887 1647 278 15 15 chrX 160108491 160108955 -2490975 - MLT1C LTR MaLR -3 464 1 1822 138 6 45 chrX 160109274 160109586 -2490344 + AluJb SINE Alu 1 300 -12 1562 189 0 4 chrX 160109598 160109863 -2490067 + AluJo SINE Alu 30 293 -19 783 303 29 61 chrX 160111968 160112411 -2487519 - MLT1J LTR MaLR -8 503 75 988 211 33 93 chrX 160112663 160113028 -2486902 - MLT1B LTR MaLR -41 349 7 186 103 0 0 chrX 160115390 160115419 -2484511 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 580 224 204 36 chrX 160115587 160115882 -2484048 + L1MB5 LINE L1 5651 5895 -279 1826 144 13 26 chrX 160115882 160116195 -2483735 - AluJo SINE Alu -3 309 1 580 224 204 36 chrX 160116195 160116311 -2483619 + L1MB5 LINE L1 5895 6165 -9 266 165 51 19 chrX 160116316 160116474 -2483456 + (TAGA)n Simple_repeat Simple_repeat 3 165 0 681 221 0 0 chrX 160116485 160116607 -2483323 - FLAM_A SINE Alu -10 123 2 183 148 33 16 chrX 160116608 160116669 -2483261 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 266 50 25 0 chrX 160116768 160116808 -2483122 + (ATTG)n Simple_repeat Simple_repeat 3 43 0 301 389 16 0 chrX 160117384 160117510 -2482420 + L1M4 LINE L1 2283 2410 -3736 1892 105 53 0 chrX 160117602 160117887 -2482043 + AluSx SINE Alu 1 300 -12 363 299 67 72 chrX 160117906 160118073 -2481857 + L1M4 LINE L1 2450 2616 -3530 1699 161 51 0 chrX 160118073 160118365 -2481565 + AluSx SINE Alu 1 307 -5 363 299 67 72 chrX 160118365 160118610 -2481320 + L1M4 LINE L1 2616 2861 -3285 849 141 0 15 chrX 160118610 160118745 -2481185 + FLAM_C SINE Alu 1 133 0 363 299 67 72 chrX 160118745 160118887 -2481043 + L1M4 LINE L1 2861 3002 -3144 2206 121 0 0 chrX 160118909 160119222 -2480708 + AluSq SINE Alu 1 313 0 388 198 208 0 chrX 160119494 160119600 -2480330 + MLT1B LTR MaLR 192 319 -71 224 333 71 24 chrX 160119931 160120057 -2479873 + L2 LINE L2 3133 3264 -8 188 299 198 17 chrX 160120177 160120354 -2479576 + L2 LINE L2 2326 2534 -780 * 285 297 22 33 chrX 160120352 160120443 -2479487 + L2 LINE L2 3183 3272 0 202 400 58 16 chrX 160120415 160120605 -2479325 + L3b LINE CR1 1386 1583 0 * 271 321 84 0 chrX 160120607 160120738 -2479192 + Charlie2 DNA MER1_type 2 143 -2719 245 298 92 0 chrX 160120877 160121018 -2478912 + Charlie2 DNA MER1_type 2237 2390 -472 755 277 26 113 chrX 160121280 160121313 -2478617 + L1ME3 LINE L1 5415 5449 -713 2211 119 0 0 chrX 160121313 160121607 -2478323 - AluSx SINE Alu -18 294 1 755 277 26 113 chrX 160121607 160122147 -2477783 + L1ME3 LINE L1 5449 5938 -224 2147 114 73 9 chrX 160122182 160122499 -2477431 + MER1B DNA MER1_type 1 337 0 1510 226 36 10 chrX 160122499 160122910 -2477020 + L1MA9 LINE L1 2621 3042 -3104 1358 143 5 0 chrX 160122910 160123113 -2476817 + AluSx SINE Alu 1 204 -108 6428 177 25 86 chrX 160123127 160123445 -2476485 + L1MA9 LINE L1 3025 3361 -2951 2559 55 0 0 chrX 160123445 160123755 -2476175 + AluY SINE Alu 1 310 -1 6428 177 25 86 chrX 160123755 160124373 -2475557 + L1MA9 LINE L1 3361 4015 -2297 1654 118 84 28 chrX 160124373 160124660 -2475270 + AluJo SINE Alu 1 303 -9 828 180 29 0 chrX 160124662 160124801 -2475129 + FLAM_C SINE Alu 1 143 0 6428 177 25 86 chrX 160124801 160125029 -2474901 + L1MA9 LINE L1 4016 4256 -2056 2174 123 10 0 chrX 160125029 160125338 -2474592 + AluSx SINE Alu 1 312 0 6428 177 25 86 chrX 160125338 160125464 -2474466 + L1MA9 LINE L1 4256 4388 -1924 1584 185 26 29 chrX 160125464 160125772 -2474158 - AluJo SINE Alu 0 312 6 6428 177 25 86 chrX 160125772 160125814 -2474116 + L1MA9 LINE L1 4388 4431 -1881 2229 48 59 3 chrX 160125814 160126103 -2473827 - AluY SINE Alu -6 305 1 6428 177 25 86 chrX 160126103 160127276 -2472654 + L1MA9 LINE L1 4431 5385 -927 2161 115 3 0 chrX 160127276 160127572 -2472358 + AluSx SINE Alu 1 297 -15 6428 177 25 86 chrX 160127572 160128243 -2471687 + L1MA9 LINE L1 5385 6096 -216 332 219 0 24 chrX 160128435 160128517 -2471413 - MER116 DNA Mariner 0 80 1 301 320 27 0 chrX 160128532 160128607 -2471323 + L1ME LINE L1 3330 3406 -2740 2271 100 0 0 chrX 160128607 160128906 -2471024 + AluSx SINE Alu 1 299 -13 980 230 72 33 chrX 160128925 160129256 -2470674 + L1 LINE L1 4615 4958 -1188 1270 178 159 19 chrX 160129256 160129520 -2470410 + AluJo SINE Alu 1 301 -1 996 158 51 0 chrX 160129523 160129681 -2470249 + AluJo/FRAM SINE Alu 137 302 0 236 98 0 0 chrX 160129681 160129722 -2470208 + L1MB4 LINE L1 6140 6180 0 * 244 269 0 0 chrX 160129718 160129796 -2470134 + L1ME LINE L1 3426 3503 -2643 2230 119 0 0 chrX 160129837 160130207 -2469723 + AluSx SINE Alu 1 370 0 1016 276 151 21 chrX 160130213 160130691 -2469239 + L1ME LINE L1 3522 3937 -2209 2463 71 0 6 chrX 160130691 160131002 -2468928 - AluSp SINE Alu -3 310 2 1016 276 151 21 chrX 160131002 160131080 -2468850 + L1ME LINE L1 3937 4004 -2142 1974 134 27 0 chrX 160131080 160131378 -2468552 + AluSg SINE Alu 1 306 -4 1016 276 151 21 chrX 160131378 160131576 -2468354 + L1ME LINE L1 4004 4375 -1771 1739 135 24 10 chrX 160131579 160131868 -2468062 + AluJo SINE Alu 1 293 -19 350 316 10 0 chrX 160131870 160131968 -2467962 + L1ME LINE L1 5129 5227 -919 331 348 179 14 chrX 160131989 160132285 -2467645 + L1ME LINE L1 5297 5641 -521 1984 147 0 6 chrX 160132578 160132892 -2467038 - AluJb SINE Alu 0 312 1 294 263 45 109 chrX 160133229 160133385 -2466545 + MIR SINE MIR 9 154 -108 385 195 35 0 chrX 160134073 160134160 -2465770 + MIR SINE MIR 47 136 -126 309 269 0 19 chrX 160136842 160136975 -2462955 + CT-rich Low_complexity Low_complexity 1 130 0 23 0 0 0 chrX 160137773 160137796 -2462134 + GC_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 160138033 160138061 -2461869 + GC_rich Low_complexity Low_complexity 1 28 0 948 138 6 29 chrX 160146675 160147027 -2452903 + (CGGGG)n Simple_repeat Simple_repeat 1 343 0 2193 96 0 7 chrX 160149531 160149832 -2450098 - AluSx SINE Alu -13 299 1 187 330 81 17 chrX 160150095 160150268 -2449662 + L2 LINE L2 2575 2758 -556 231 250 0 0 chrX 160151304 160151348 -2448582 + (CGG)n Simple_repeat Simple_repeat 2 45 0 303 240 58 10 chrX 160152754 160152858 -2447072 + MER94 DNA DNA 1 109 -25 772 286 40 0 chrX 160156705 160156957 -2442973 + L1MB7 LINE L1 5912 6173 -11 2189 120 0 0 chrX 160159466 160159775 -2440155 + AluSg SINE Alu 1 309 -1 423 138 0 0 chrX 160159781 160159868 -2440062 + (CAAG)n Simple_repeat Simple_repeat 2 88 0 509 318 107 13 chrX 160162260 160162493 -2437437 + L2 LINE L2 3016 3270 -2 183 429 25 0 chrX 160162570 160162689 -2437241 + MIR SINE MIR 117 238 -24 453 362 11 6 chrX 160163602 160163776 -2436154 - MIR3 SINE MIR -1 207 33 1124 144 11 0 chrX 160167071 160167251 -2432679 - AluSg/x SINE Alu 0 312 131 1433 168 98 15 chrX 160169197 160169471 -2430459 + AluJb SINE Alu 1 297 -15 2364 88 0 3 chrX 160169893 160170199 -2429731 - AluSq SINE Alu -8 305 1 2240 79 0 3 chrX 160171335 160171626 -2428304 - AluSx SINE Alu -22 290 1 219 333 0 42 chrX 160171863 160171935 -2427995 - L2 LINE L2 0 3272 3204 251 310 23 0 chrX 160172585 160172672 -2427258 - L3 LINE CR1 -356 1221 1133 282 204 11 45 chrX 160172860 160172948 -2426982 + CT-rich Low_complexity Low_complexity 1 85 0 202 222 0 22 chrX 160173437 160173482 -2426448 + (CACG)n Simple_repeat Simple_repeat 3 46 0 2437 48 0 3 chrX 160179507 160179802 -2420128 + AluY SINE Alu 1 294 -17 234 322 92 63 chrX 160179806 160179980 -2419950 - MIR SINE MIR -7 255 77 1190 107 0 34 chrX 160181163 160181341 -2418589 - AluSg/x SINE Alu -5 305 134 2159 118 0 0 chrX 160181342 160181639 -2418291 - AluSx SINE Alu -15 297 1 1477 206 123 0 chrX 160182109 160182468 -2417462 - MER63B DNA MER1_type -33 403 1 367 217 58 60 chrX 160183377 160183586 -2416344 + L1ME LINE L1 5159 5374 -804 21 0 0 0 chrX 160184226 160184247 -2415683 + AT_rich Low_complexity Low_complexity 1 21 0 652 128 39 10 chrX 160184247 160184349 -2415581 - AluJb SINE Alu -195 117 13 2090 100 0 0 chrX 160184395 160184674 -2415256 + AluSx SINE Alu 2 280 -32 323 264 18 54 chrX 160185649 160185816 -2414114 + L1ME LINE L1 5542 5702 -419 374 252 53 23 chrX 160186876 160187007 -2412923 - L2 LINE L2 -247 3066 2932 457 254 43 0 chrX 160187007 160187145 -2412785 - L2 LINE L2 -676 2638 2495 1293 223 151 55 chrX 160187168 160187896 -2412034 + L1MB7 LINE L1 5354 6165 -9 2151 108 0 0 chrX 160188166 160188462 -2411468 + AluSx SINE Alu 1 296 -16 871 144 0 119 chrX 160188473 160188674 -2411256 + AluJb SINE Alu 136 312 0 382 216 36 36 chrX 160188687 160188826 -2411104 - L2 LINE L2 -1107 2207 2069 2408 68 0 10 chrX 160190269 160190577 -2409353 + AluSg SINE Alu 1 305 -5 993 157 6 0 chrX 160190581 160190747 -2409183 + AluSg/x SINE Alu 141 307 -5 1232 285 42 32 chrX 160190747 160191246 -2408684 - L1MC4 LINE L1 -369 7673 7170 208 135 0 0 chrX 160191662 160191699 -2408231 + (A)n Simple_repeat Simple_repeat 1 37 0 329 247 26 0 chrX 160191786 160191863 -2408067 + MER5A DNA MER1_type 29 107 -82 2310 80 10 0 chrX 160192110 160192409 -2407521 + AluSx SINE Alu 1 302 -10 348 83 0 0 chrX 160192822 160192870 -2407060 + (TC)n Simple_repeat Simple_repeat 1 48 0 1169 188 14 0 chrX 160192870 160193093 -2406837 - AluJo SINE Alu -1 311 86 1933 109 19 56 chrX 160193249 160193436 -2406494 - AluSg SINE Alu 0 310 138 2138 84 28 0 chrX 160193436 160193720 -2406210 - AluSp SINE Alu -21 292 1 1933 109 19 56 chrX 160193720 160193854 -2406076 - AluSg SINE Alu -172 138 1 321 231 16 91 chrX 160193951 160194072 -2405858 - MIR SINE MIR -82 180 69 341 338 26 7 chrX 160194187 160194226 -2405704 - L1MA10 LINE L1 -3 6331 6293 318 270 110 31 chrX 160194226 160194389 -2405541 - L1ME2 LINE L1 -37 6127 5952 2241 71 3 0 chrX 160194919 160195225 -2404705 + AluSp SINE Alu 1 307 0 2993 209 92 36 chrX 160195842 160196136 -2403794 + L1MD3 LINE L1 3861 4137 -2009 2157 128 0 3 chrX 160196136 160196449 -2403481 + AluSx SINE Alu 1 312 0 2993 209 92 36 chrX 160196449 160196619 -2403311 + L1MD3 LINE L1 4137 4296 -1850 2022 125 0 10 chrX 160196619 160196914 -2403016 - AluSx SINE Alu -20 292 1 2993 209 92 36 chrX 160196914 160197333 -2402597 + L1MD3 LINE L1 4296 4794 -1352 1701 256 153 14 chrX 160197323 160198021 -2401909 + L1MD3 LINE L1 5337 6131 -1864 * 2308 190 74 10 chrX 160197574 160198085 -2401845 + L1MB7 LINE L1 5640 6183 -1 198 0 0 0 chrX 160199406 160199428 -2400502 + (CCCCCG)n Simple_repeat Simple_repeat 3 24 0 27 49 0 0 chrX 160200397 160200438 -2399492 + GC_rich Low_complexity Low_complexity 1 41 0 78 96 0 0 chrX 160200800 160201039 -2398891 + GC_rich Low_complexity Low_complexity 1 239 0 365 203 20 47 chrX 160201128 160201276 -2398654 + G-rich Low_complexity Low_complexity 1 144 0 262 111 0 37 chrX 160201553 160201607 -2398323 + (GAAA)n Simple_repeat Simple_repeat 3 54 0 1095 319 102 22 chrX 160202115 160202799 -2397131 - HERVL LTR ERVL -1349 4305 3567 848 319 17 32 chrX 160202870 160203218 -2396712 - HERVL LTR ERVL -2325 3439 3097 994 167 6 0 chrX 160203225 160203399 -2396531 + FRAM SINE Alu 1 170 -6 1144 228 72 42 chrX 160203981 160204191 -2395739 + MER2 DNA MER2_type 1 226 -118 2538 55 0 0 chrX 160204191 160204499 -2395431 - AluY SINE Alu -3 308 1 1144 228 72 42 chrX 160204499 160204622 -2395308 + MER2 DNA MER2_type 226 344 0 472 262 27 7 chrX 160204892 160205041 -2394889 - L1M4 LINE L1 -1031 5115 4964 1335 222 24 30 chrX 160205056 160205353 -2394577 - MLT1A1 LTR MaLR -70 295 1 491 196 21 0 chrX 160205359 160205456 -2394474 - L1M4 LINE L1 -1187 4959 4861 2080 95 0 0 chrX 160205472 160205768 -2394162 - AluSx SINE Alu 0 306 11 1746 115 68 14 chrX 160205967 160206245 -2393685 + AluSx SINE Alu 1 293 -19 2187 99 0 6 chrX 160206252 160206564 -2393366 + AluSg SINE Alu 1 310 0 1284 171 0 25 chrX 160206734 160206974 -2392956 + AluJo SINE Alu 78 311 -1 1863 190 31 51 chrX 160206978 160207217 -2392713 - L1MB4 LINE L1 -6 6174 5936 517 277 14 62 chrX 160207217 160207438 -2392492 - L1ME3 LINE L1 -216 5946 5741 1490 160 0 70 chrX 160207438 160207750 -2392180 - AluJo SINE Alu -22 290 1 517 277 14 62 chrX 160207750 160207817 -2392113 - L1ME3 LINE L1 -421 5741 5672 1966 94 4 0 chrX 160207818 160208083 -2391847 + AluSq SINE Alu 38 303 -10 399 285 62 8 chrX 160208083 160208266 -2391664 - L1MB4 LINE L1 -458 5712 5516 689 158 17 0 chrX 160208274 160208394 -2391536 - AluSg/x SINE Alu -9 300 179 853 277 58 31 chrX 160208395 160208744 -2391186 - L1MB4 LINE L1 -674 5496 5123 1648 152 72 0 chrX 160208744 160209034 -2390896 - AluJo SINE Alu -1 311 1 853 277 58 31 chrX 160209034 160209306 -2390624 - L1MB4 LINE L1 -1047 5123 4860 1120 154 65 37 chrX 160209319 160209533 -2390397 - AluJb SINE Alu -7 305 86 783 263 97 13 chrX 160209533 160209906 -2390024 - L1MB4 LINE L1 -1281 4865 4462 992 168 0 25 chrX 160209910 160210106 -2389824 - AluJo SINE Alu 0 312 122 1141 298 33 43 chrX 160210106 160210489 -2389441 - L1MB4 LINE L1 -1721 4425 4040 2316 73 13 16 chrX 160210489 160210802 -2389128 + AluSx SINE Alu 1 312 0 1141 298 33 43 chrX 160210802 160210996 -2388934 - L1MB4 LINE L1 -2106 4040 3854 2079 55 80 0 chrX 160210996 160211270 -2388660 + AluY SINE Alu 1 296 -15 1141 298 33 43 chrX 160211270 160211388 -2388542 - L1MB4 LINE L1 -2292 3854 3736 308 321 159 20 chrX 160212309 160212569 -2387361 - L1MB4 LINE L1 -2401 3745 3438 2447 62 0 16 chrX 160212569 160212877 -2387053 - AluSx SINE Alu -9 303 1 308 321 159 20 chrX 160212877 160212912 -2387018 - L1MB4 LINE L1 -2708 3438 3409 2428 59 16 0 chrX 160213038 160213342 -2386588 + AluSx SINE Alu 1 309 -3 1866 155 18 15 chrX 160213352 160213693 -2386237 - L1MB7 LINE L1 -48 6136 5795 232 121 69 52 chrX 160213705 160213763 -2386167 + L1MC4 LINE L1 7984 8042 0 758 355 84 36 chrX 160213766 160214184 -2385746 + L1M4 LINE L1 2859 3256 -2890 1730 169 0 20 chrX 160214184 160214485 -2385445 + AluJo SINE Alu 1 295 -17 758 355 84 36 chrX 160214485 160214792 -2385138 + L1M4 LINE L1 3256 3808 -2338 334 333 43 0 chrX 160214824 160214962 -2384968 + L1M4 LINE L1 3802 3945 -2201 497 260 13 13 chrX 160215145 160215295 -2384635 - L1M4 LINE L1 -1054 5092 4943 999 104 12 6 chrX 160215737 160215900 -2384030 + MER67C LTR ERV1 547 710 0 1020 193 83 34 chrX 160216178 160216442 -2383488 - MER67C LTR ERV1 -433 277 1 410 302 33 11 chrX 160216900 160217079 -2382851 + L1MC4 LINE L1 6526 6703 -1139 404 305 0 35 chrX 160216987 160217084 -2382846 - L1MC4 LINE L1 -1341 6684 6585 * 1390 136 214 0 chrX 160217084 160217327 -2382603 - AluSx SINE Alu -17 295 1 404 305 0 35 chrX 160217327 160217375 -2382555 - L1MC4 LINE L1 -1440 6585 1661 2477 53 0 0 chrX 160217443 160217743 -2382187 - AluY SINE Alu -10 301 2 2346 80 0 0 chrX 160217796 160218098 -2381832 - AluSp SINE Alu -7 306 5 1986 136 0 34 chrX 160218949 160219272 -2380658 + AluSx SINE Alu 1 312 0 2187 96 3 3 chrX 160220068 160220369 -2379561 - AluSx SINE Alu -11 301 1 1919 140 13 0 chrX 160220485 160220665 -2379265 - AluJo SINE Alu -1 311 124 519 60 0 0 chrX 160220665 160220732 -2379198 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1919 140 13 0 chrX 160220732 160220858 -2379072 - AluJo SINE Alu -188 124 1 189 0 0 0 chrX 160221741 160221762 -2378168 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1950 116 4 0 chrX 160221764 160222040 -2377890 - AluSq SINE Alu -14 299 23 372 88 4 0 chrX 160222040 160222100 -2377830 - Alu SINE Alu -256 46 1 622 209 15 22 chrX 160222113 160222270 -2377660 - MLT1H LTR MaLR -395 154 6 643 266 50 77 chrX 160222274 160222667 -2377263 - L1MC4 LINE L1 -4630 1499 1132 1857 156 0 17 chrX 160222667 160222968 -2376962 + AluJb SINE Alu 1 296 -16 643 266 50 77 chrX 160222968 160223332 -2376598 - L1MC4 LINE L1 -4997 1132 760 896 165 51 11 chrX 160223384 160223560 -2376370 - AluJo SINE Alu -16 296 114 287 302 38 9 chrX 160223587 160223693 -2376237 - L1MC4 LINE L1 -5459 660 552 1660 173 0 0 chrX 160224304 160224575 -2375355 - AluJb SINE Alu -41 271 1 641 293 31 40 chrX 160224639 160224864 -2375066 - L1ME LINE L1 -554 5610 5388 627 213 130 30 chrX 160224968 160225198 -2374732 - LTR50 LTR ERVL -496 299 47 1771 157 10 22 chrX 160225505 160225817 -2374113 + AluJo SINE Alu 1 308 -4 276 262 0 12 chrX 160225841 160225925 -2374005 - ERVL LTR ERVL -2823 2662 2580 601 325 74 22 chrX 160226007 160226658 -2373272 - ERVL LTR ERVL -2945 2540 836 310 331 32 6 chrX 160226690 160226847 -2373083 + HERVL LTR ERVL 422 582 -5072 993 140 134 0 chrX 160227012 160227191 -2372739 - AluJb SINE Alu -109 203 1 617 194 0 0 chrX 160227240 160227348 -2372582 - MLT1C LTR MaLR 0 467 360 657 224 8 0 chrX 160227358 160227483 -2372447 + FRAM SINE Alu 51 176 0 315 146 0 0 chrX 160227483 160227538 -2372392 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 344 332 72 32 chrX 160227539 160227789 -2372141 + L1M4c LINE L1 947 1206 -5178 236 75 0 25 chrX 160227789 160227829 -2372101 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 587 233 99 78 chrX 160227829 160228315 -2371615 - LTR50 LTR ERVL -201 594 99 957 304 43 15 chrX 160228389 160228819 -2371111 + L1ME3 LINE L1 5668 6117 -45 1694 182 36 0 chrX 160228857 160229165 -2370765 + L1MC2 LINE L1 6026 6344 0 426 312 41 18 chrX 160229168 160229338 -2370592 - MLT1J LTR MaLR -102 409 236 2166 128 0 0 chrX 160229347 160229659 -2370271 + AluSx SINE Alu 1 312 0 565 13 0 26 chrX 160229659 160229735 -2370195 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 326 250 89 9 chrX 160229800 160229912 -2370018 - MLT1J LTR MaLR -390 121 1 629 285 233 22 chrX 160229925 160230419 -2369511 - L2 LINE L2 -1505 1809 1212 1340 153 0 14 chrX 160230429 160230651 -2369279 + AluJo SINE Alu 1 219 -93 1020 106 11 11 chrX 160230668 160230848 -2369082 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 699 132 0 0 chrX 160230848 160230962 -2368968 + (TC)n Simple_repeat Simple_repeat 1 114 0 465 149 92 0 chrX 160230962 160231049 -2368881 - AluSg/x SINE Alu -1 309 215 412 331 6 0 chrX 160231053 160231213 -2368717 - L1ME3 LINE L1 -66 6096 5936 474 104 0 0 chrX 160231214 160231281 -2368649 + AluJ/FRAM SINE Alu 233 299 -13 359 248 20 10 chrX 160236130 160236231 -2363699 + L1MC4 LINE L1 7242 7343 -699 2138 129 7 0 chrX 160236233 160236586 -2363344 + AluSx SINE Alu 1 355 0 233 286 0 12 chrX 160236682 160236766 -2363164 + L1MC4 LINE L1 7754 7836 -206 225 299 104 14 chrX 160239290 160239434 -2360496 + L2 LINE L2 2908 3064 -208 225 0 0 0 chrX 160240547 160240572 -2359358 + (CCCTG)n Simple_repeat Simple_repeat 1 25 0 268 315 0 9 chrX 160246094 160246205 -2353725 + G-rich Low_complexity Low_complexity 3 112 0 2008 121 13 29 chrX 160246914 160247228 -2352702 + AluSx SINE Alu 1 309 -3 2219 101 0 16 chrX 160247228 160247364 -2352566 + AluSq SINE Alu 1 138 -175 2146 86 0 63 chrX 160247364 160247679 -2352251 + AluSg SINE Alu 1 295 -15 2219 101 0 16 chrX 160247679 160247849 -2352081 + AluSq SINE Alu 138 302 -11 543 311 11 16 chrX 160251302 160251485 -2348445 - MIR SINE MIR -6 256 75 209 211 19 0 chrX 160252720 160252772 -2347158 + (CA)n Simple_repeat Simple_repeat 2 54 0 205 331 0 52 chrX 160253371 160253525 -2346405 + G-rich Low_complexity Low_complexity 4 149 0 212 365 0 12 chrX 160254326 160254411 -2345519 + L2 LINE L2 3157 3240 -32 289 250 58 0 chrX 160254630 160254734 -2345196 + L1ME4a LINE L1 6003 6112 -9 182 273 26 39 chrX 160254777 160254854 -2345076 + MIR SINE MIR 16 91 -117 204 256 22 33 chrX 160256357 160256447 -2343483 + G-rich Low_complexity Low_complexity 6 94 0 234 0 0 0 chrX 160256463 160256489 -2343441 + (CCCCG)n Simple_repeat Simple_repeat 2 27 0 327 341 92 0 chrX 160258030 160258194 -2341736 - MIR SINE MIR -11 251 73 288 343 10 0 chrX 160258198 160258297 -2341633 - MIR SINE MIR -55 207 108 493 289 0 14 chrX 160258317 160258465 -2341465 - MIR SINE MIR -61 147 21 331 250 26 26 chrX 160258842 160258958 -2340972 - L1MEc LINE L1 -3855 2360 2245 * 402 190 42 48 chrX 160258955 160258969 -2340961 - L1ME1 LINE L1 0 6184 6171 1485 122 18 9 chrX 160258969 160259191 -2340739 + AluJo SINE Alu 78 301 -11 402 190 42 48 chrX 160259191 160259433 -2340497 - L1ME1 LINE L1 -13 6171 5929 192 40 0 0 chrX 160259433 160259458 -2340472 + (TG)n Simple_repeat Simple_repeat 1 25 0 402 190 42 48 chrX 160259458 160259725 -2340205 - L1ME1 LINE L1 -255 5929 5593 1709 177 3 19 chrX 160259862 160260178 -2339752 - AluJb SINE Alu -1 311 1 760 123 25 0 chrX 160260202 160260324 -2339606 - LTR12 LTR ERV1 -231 483 359 315 206 0 0 chrX 160260324 160260397 -2339533 - LTR30 LTR ERV1 -98 624 552 1448 52 87 129 chrX 160260416 160260702 -2339228 - LTR12 LTR ERV1 -440 274 1 329 326 109 0 chrX 160261298 160261436 -2338494 - L1MEc LINE L1 -4234 2162 2010 591 165 0 0 chrX 160261445 160261548 -2338382 + MLT1F1 LTR MaLR 3 105 -462 2235 95 0 7 chrX 160261548 160261843 -2338087 - AluSq SINE Alu -12 301 9 2289 87 3 0 chrX 160261843 160262143 -2337787 - AluSq SINE Alu -12 301 1 964 190 0 17 chrX 160262146 160262325 -2337605 - FRAM SINE Alu -9 167 1 1584 218 114 7 chrX 160262325 160262403 -2337527 + MLT1F1 LTR MaLR 111 179 -388 270 0 0 0 chrX 160262403 160262433 -2337497 + (TC)n Simple_repeat Simple_repeat 1 30 0 1584 218 114 7 chrX 160262433 160262767 -2337163 + MLT1F1 LTR MaLR 179 567 0 350 153 0 0 chrX 160263341 160263400 -2336530 + MLT1A2 LTR MaLR 1 59 -315 1874 159 10 3 chrX 160263427 160263867 -2336063 + AluJb SINE Alu 1 312 0 1003 155 26 10 chrX 160263891 160264084 -2335846 + MLT1A2 LTR MaLR 179 374 0 1963 133 6 25 chrX 160264407 160264724 -2335206 + AluSx SINE Alu 1 311 -1 492 265 27 0 chrX 160264740 160264887 -2335043 + HAL1 LINE L1 13 163 -2344 1572 235 123 55 chrX 160264942 160265345 -2334585 + HAL1 LINE L1 348 722 -1785 2284 108 0 0 chrX 160265345 160265650 -2334280 - AluSq SINE Alu -8 305 1 1572 235 123 55 chrX 160265650 160265801 -2334129 + HAL1 LINE L1 722 861 -1646 2119 107 0 3 chrX 160265801 160266091 -2333839 + AluSg SINE Alu 1 289 -21 1572 235 123 55 chrX 160266091 160266251 -2333679 + HAL1 LINE L1 861 1112 -1395 716 316 69 26 chrX 160266252 160266670 -2333260 + L1MCc LINE L1 19 454 -5969 256 315 35 62 chrX 160266965 160267254 -2332676 + L1MCc LINE L1 1023 1303 -5120 251 234 56 47 chrX 160267269 160267308 -2332622 - MLT1G1 LTR MaLR -58 484 447 2116 136 3 0 chrX 160267308 160267610 -2332320 + AluJb SINE Alu 1 303 -9 251 234 56 47 chrX 160267610 160267677 -2332253 - MLT1G1 LTR MaLR -95 447 377 2189 100 0 3 chrX 160267699 160268000 -2331930 - AluSg SINE Alu -10 300 1 991 208 46 21 chrX 160268015 160268336 -2331594 - MLT1G1 LTR MaLR -300 290 1 2484 256 33 19 chrX 160268336 160269230 -2330700 + L1MCc LINE L1 2961 4011 -2930 2057 103 7 4 chrX 160269230 160269531 -2330399 + AluSq SINE Alu 1 302 0 2484 256 33 19 chrX 160269531 160269845 -2330085 + L1MCc LINE L1 4011 4319 -2622 591 241 29 0 chrX 160269852 160270022 -2329908 + L1MCc LINE L1 4364 4538 -2403 991 98 8 0 chrX 160270023 160270155 -2329775 + AluSc SINE Alu 1 133 -176 2413 81 3 0 chrX 160270155 160270465 -2329465 + AluSp SINE Alu 1 311 -2 23 0 0 0 chrX 160270538 160270561 -2329369 + AT_rich Low_complexity Low_complexity 1 23 0 1314 87 6 0 chrX 160270596 160270779 -2329151 - AluSg/x SINE Alu -1 311 128 1168 187 30 15 chrX 160270779 160271046 -2328884 + L1ME1 LINE L1 5891 6161 -5 333 167 0 0 chrX 160271624 160271702 -2328228 + (CA)n Simple_repeat Simple_repeat 1 78 0 515 144 22 22 chrX 160271715 160271895 -2328035 + (CA)n Simple_repeat Simple_repeat 1 180 0 420 311 101 0 chrX 160273202 160273350 -2326580 - MIR3 SINE MIR -45 163 1 387 158 53 16 chrX 160273559 160273814 -2326116 + (TG)n Simple_repeat Simple_repeat 1 264 0 228 86 0 0 chrX 160274014 160274049 -2325881 + (GGCTG)n Simple_repeat Simple_repeat 3 37 0 213 309 0 0 chrX 160274091 160274159 -2325771 + G-rich Low_complexity Low_complexity 3 70 0 350 331 31 0 chrX 160274574 160274701 -2325229 + MIR3 SINE MIR 64 194 -14 270 0 0 0 chrX 160275526 160275556 -2324374 + (CTGGGG)n Simple_repeat Simple_repeat 4 33 0 226 321 9 38 chrX 160277059 160277165 -2322765 + MIR3 SINE MIR 82 184 -24 225 263 50 10 chrX 160279783 160279882 -2320048 + MER5A DNA MER1_type 19 121 -68 1075 176 5 5 chrX 160281454 160281647 -2318283 - AluJb SINE Alu -7 305 113 309 313 62 35 chrX 160281657 160281831 -2318099 - L1M4 LINE L1 -1685 4461 4276 1935 126 32 26 chrX 160281831 160282141 -2317789 + AluSx SINE Alu 1 312 0 309 313 62 35 chrX 160282141 160282222 -2317708 - L1M4 LINE L1 -1870 4276 4199 337 176 12 12 chrX 160282268 160282353 -2317577 + CT-rich Low_complexity Low_complexity 1 85 0 1269 101 0 0 chrX 160282354 160282523 -2317407 - AluJb SINE Alu -143 169 1 773 205 105 22 chrX 160284291 160284606 -2315324 + L1MB7 LINE L1 5753 6182 -2 2023 109 0 3 chrX 160284615 160284923 -2315007 + AluSx SINE Alu 1 307 0 1418 216 31 17 chrX 160285250 160285606 -2314324 + L1MB3 LINE L1 5813 6173 -10 971 87 0 0 chrX 160285636 160285763 -2314167 + AluJ SINE Alu 13 139 -173 1101 140 0 17 chrX 160285824 160286002 -2313928 + AluJ SINE Alu 122 296 -16 275 282 26 0 chrX 160286060 160286138 -2313792 + HAL1 LINE L1 433 512 -1995 1777 227 84 2 chrX 160286143 160286667 -2313263 + MER90 LTR ERV1 4 612 -2 253 277 36 0 chrX 160286729 160286812 -2313118 + HAL1 LINE L1 626 711 -1796 358 307 60 78 chrX 160286825 160286997 -2312933 + HAL1 LINE L1 809 978 -1529 2049 86 3 89 chrX 160286997 160287135 -2312795 + AluSq SINE Alu 1 97 -216 2279 98 0 0 chrX 160287135 160287440 -2312490 + AluSx SINE Alu 1 305 -7 2049 86 3 89 chrX 160287440 160287625 -2312305 + AluSq SINE Alu 97 296 -17 358 307 60 78 chrX 160287625 160287670 -2312260 + HAL1 LINE L1 978 1022 -1485 1567 156 43 18 chrX 160287677 160287981 -2311949 + AluJb SINE Alu 1 311 0 233 253 101 10 chrX 160288009 160288108 -2311822 + HAL1 LINE L1 1686 1793 -714 620 271 11 11 chrX 160288246 160288434 -2311496 + HAL1 LINE L1 2031 2218 -289 2253 109 0 0 chrX 160289983 160290286 -2309644 - AluSg SINE Alu -7 303 1 362 324 127 37 chrX 160292956 160293200 -2306730 - L2 LINE L2 -5 3308 3043 2291 74 20 3 chrX 160293980 160294279 -2305651 - AluSx SINE Alu -8 304 1 269 277 33 92 chrX 160294595 160294779 -2305151 + L2 LINE L2 3005 3177 -95 343 183 28 14 chrX 160295529 160295600 -2304330 + MIR SINE MIR 81 152 -56 213 200 0 0 chrX 160296116 160296156 -2303774 + GA-rich Low_complexity Low_complexity 3 42 0 22 88 0 0 chrX 160296499 160296556 -2303374 + GC_rich Low_complexity Low_complexity 1 57 0 276 100 0 0 chrX 160299000 160299040 -2300890 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1816 115 39 4 chrX 160299040 160299319 -2300611 - AluJb SINE Alu -19 293 5 707 183 32 21 chrX 160299337 160299523 -2300407 + L1MC2 LINE L1 6047 6234 -110 187 321 36 0 chrX 160299681 160299737 -2300193 - L2 LINE L2 -994 2320 2263 1750 164 13 13 chrX 160302972 160303271 -2296659 + AluJb SINE Alu 2 300 -12 1897 191 66 26 chrX 160303271 160303588 -2296342 + L1MC2 LINE L1 5823 6170 -174 2057 105 0 7 chrX 160303588 160303902 -2296028 + AluSx SINE Alu 1 312 0 1897 191 66 26 chrX 160303902 160304085 -2295845 + L1MC2 LINE L1 6170 6344 0 22 0 0 0 chrX 160304907 160304929 -2295001 + GC_rich Low_complexity Low_complexity 1 22 0 211 184 0 79 chrX 160305309 160305385 -2294545 + (CGGGG)n Simple_repeat Simple_repeat 2 71 0 279 54 0 0 chrX 160305504 160305541 -2294389 + (CGGGGG)n Simple_repeat Simple_repeat 5 41 0 238 292 10 42 chrX 160305815 160305911 -2294019 - MIR SINE MIR -162 100 8 2092 84 3 14 chrX 160306048 160306368 -2293562 + AluSx SINE Alu 1 317 0 2523 52 3 0 chrX 160306426 160306736 -2293194 + AluY SINE Alu 1 311 0 1827 120 21 18 chrX 160307115 160307445 -2292485 + AluJb SINE Alu 1 331 0 2163 97 0 50 chrX 160307634 160307817 -2292113 - AluSq SINE Alu -9 304 142 1609 108 126 18 chrX 160307817 160308095 -2291835 - AluSg SINE Alu -2 308 1 2163 97 0 50 chrX 160308095 160308231 -2291699 - AluSq SINE Alu -171 142 1 1085 224 18 14 chrX 160308342 160308619 -2291311 - Charlie4a DNA MER1_type -192 316 39 254 244 191 8 chrX 160308817 160308948 -2290982 + L2 LINE L2 1951 2105 -1209 2469 77 0 0 chrX 160308983 160309294 -2290636 - AluSq SINE Alu -2 311 1 1803 137 20 24 chrX 160309294 160309586 -2290344 - AluJo SINE Alu -20 292 2 220 275 33 44 chrX 160309588 160309679 -2290251 + L2 LINE L2 2214 2303 -1011 4189 58 35 22 chrX 160310690 160311058 -2288872 + MER41A LTR ERV1 1 380 -174 2502 62 3 0 chrX 160311058 160311367 -2288563 + AluSp SINE Alu 1 310 -3 4189 58 35 22 chrX 160311367 160311545 -2288385 + MER41A LTR ERV1 380 554 0 2290 103 0 3 chrX 160312425 160312737 -2287193 - AluSx SINE Alu -1 311 1 192 40 0 0 chrX 160315253 160315278 -2284652 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1756 115 100 0 chrX 160315280 160315549 -2284381 - AluJb SINE Alu -16 296 1 1930 119 6 48 chrX 160315624 160315936 -2283994 - AluSg SINE Alu -11 299 1 320 326 96 34 chrX 160318665 160318843 -2281087 + L1 LINE L1 3150 3338 -2808 180 125 0 0 chrX 160325305 160325337 -2274593 + (TGG)n Simple_repeat Simple_repeat 1 32 0 201 263 18 0 chrX 160332728 160332785 -2267145 - L2 LINE L2 -24 3248 3191 1154 217 0 9 chrX 160336205 160336435 -2263495 + AluJo SINE Alu 85 312 0 273 286 103 8 chrX 160337284 160337410 -2262520 - L3 LINE CR1 -219 1358 1221 231 332 66 46 chrX 160337845 160338041 -2261889 - L2 LINE L2 -167 3105 2906 491 266 7 29 chrX 160338178 160338317 -2261613 + MIR3 SINE MIR 61 196 -12 180 0 0 0 chrX 160340353 160340373 -2259557 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 198 0 0 0 chrX 160340407 160340429 -2259501 + (CCCCAG)n Simple_repeat Simple_repeat 6 27 0 524 180 0 48 chrX 160340621 160340810 -2259120 + GA-rich Low_complexity Low_complexity 1 180 0 27 49 0 0 chrX 160342607 160342648 -2257282 + GC_rich Low_complexity Low_complexity 1 41 0 21 71 0 0 chrX 160342721 160342763 -2257167 + GC_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chrX 160342773 160342816 -2257114 + GC_rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chrX 160343135 160343161 -2256769 + (CGG)n Simple_repeat Simple_repeat 3 28 0 528 297 26 0 chrX 160343331 160343526 -2256404 + Charlie4a DNA MER1_type 247 446 -62 1347 132 177 0 chrX 160343637 160343880 -2256050 + AluJo SINE Alu 1 286 -26 243 0 0 0 chrX 160343880 160343907 -2256023 + (CA)n Simple_repeat Simple_repeat 2 28 0 1486 185 39 24 chrX 160345305 160345494 -2254436 - L1 LINE L1 -896 5250 5065 1992 124 3 0 chrX 160345494 160345825 -2254105 - AluSx SINE Alu 0 312 1 2225 104 0 3 chrX 160345827 160346134 -2253796 - AluSx SINE Alu 0 312 7 1486 185 39 24 chrX 160346134 160346324 -2253606 - L1 LINE L1 -1081 5065 4862 * 2302 193 14 35 chrX 160346322 160346447 -2253483 + L1MA5 LINE L1 5707 5833 -467 2185 108 0 25 chrX 160346447 160346763 -2253167 + AluSx SINE Alu 4 311 -1 2302 193 14 35 chrX 160346763 160346775 -2253155 + L1MA5 LINE L1 5833 5844 -456 1781 179 10 3 chrX 160346775 160347083 -2252847 + AluJo SINE Alu 1 310 -2 2302 193 14 35 chrX 160347083 160347515 -2252415 + L1MA5 LINE L1 5844 6265 -35 1980 126 10 0 chrX 160347528 160347822 -2252108 + AluSx SINE Alu 1 297 -15 2022 85 16 39 chrX 160347824 160348129 -2251801 + AluSq SINE Alu 1 298 -15 1999 110 24 7 chrX 160348131 160348423 -2251507 + AluSg SINE Alu 1 297 -13 2225 102 3 0 chrX 160348469 160348763 -2251167 - AluSx SINE Alu -17 295 1 2316 75 0 47 chrX 160348765 160348948 -2250982 - AluSq SINE Alu -5 308 118 441 0 0 0 chrX 160348948 160348997 -2250933 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2165 91 3 7 chrX 160348997 160349283 -2250647 - AluSx SINE Alu -27 285 1 2316 75 0 47 chrX 160349283 160349420 -2250510 - AluSq SINE Alu -193 120 2 1545 112 88 88 chrX 160349420 160349715 -2250215 - AluJo SINE Alu -17 295 1 272 242 0 0 chrX 160349716 160349778 -2250152 - Tigger5 DNA MER2_type 0 2323 2262 1674 112 48 31 chrX 160349809 160349930 -2250000 + AluSx SINE Alu 1 118 -194 2409 53 3 7 chrX 160349930 160350232 -2249698 - AluY SINE Alu -10 301 1 1674 112 48 31 chrX 160350232 160350404 -2249526 + AluSx SINE Alu 118 299 -13 921 130 12 37 chrX 160350404 160350565 -2249365 + AluJb SINE Alu 134 290 -22 467 276 109 17 chrX 160350629 160350803 -2249127 + MIR3 SINE MIR 5 194 -14 2202 104 0 3 chrX 160350831 160351129 -2248801 + AluSx SINE Alu 1 297 -15 302 244 146 0 chrX 160351136 160351218 -2248712 - MIR SINE MIR -136 126 33 2254 82 7 0 chrX 160354068 160354359 -2245571 - AluSx SINE Alu -19 293 1 434 212 61 30 chrX 160355338 160355470 -2244460 - MER53 DNA DNA -52 137 2 456 279 115 12 chrX 160355958 160356123 -2243807 - MIR3 SINE MIR -22 186 5 2313 81 0 3 chrX 160356214 160356511 -2243419 + AluSq SINE Alu 1 296 -17 2227 107 0 0 chrX 160356537 160356836 -2243094 + AluSx SINE Alu 1 299 -13 1730 159 0 36 chrX 160356844 160357152 -2242778 + AluJo SINE Alu 1 297 -15 288 323 104 10 chrX 160357276 160357468 -2242462 - L1M1 LINE L1 -661 5642 5433 1016 147 0 0 chrX 160357527 160357683 -2242247 - AluJo SINE Alu -25 287 132 2229 110 10 0 chrX 160357684 160357993 -2241937 - AluSp SINE Alu -1 312 1 204 40 0 0 chrX 160358009 160358034 -2241896 + (A)n Simple_repeat Simple_repeat 1 25 0 2207 62 34 14 chrX 160358084 160358376 -2241554 - AluSg SINE Alu -12 298 1 462 167 217 25 chrX 160358379 160358499 -2241431 - AluJo SINE Alu -169 143 1 560 157 0 0 chrX 160358512 160358595 -2241335 - AluJ/FLAM SINE Alu -229 83 1 24 85 0 0 chrX 160358762 160358821 -2241109 + AT_rich Low_complexity Low_complexity 1 59 0 1258 119 0 10 chrX 160359296 160359477 -2240453 - AluSg/x SINE Alu 0 312 132 711 170 0 48 chrX 160359477 160359624 -2240306 - L1PA15 LINE L1 0 6165 6026 1258 119 0 10 chrX 160359624 160359636 -2240294 - AluSg/x SINE Alu -180 132 121 1961 124 0 0 chrX 160359895 160360224 -2239706 - AluSx SINE Alu 0 329 1 1490 197 110 3 chrX 160360501 160360891 -2239039 + L1MB2 LINE L1 5580 6011 -160 2175 84 7 7 chrX 160360893 160361189 -2238741 - AluY SINE Alu -15 296 1 415 340 135 12 chrX 160361209 160361468 -2238462 - HAL1 LINE L1 -1206 1301 1011 1616 180 13 28 chrX 160361469 160361829 -2238101 - AluJb SINE Alu 0 312 139 1958 110 7 10 chrX 160361829 160362174 -2237756 - AluSq SINE Alu 0 313 1 1616 180 13 28 chrX 160362174 160362311 -2237619 - AluJb SINE Alu -173 139 1 466 248 38 13 chrX 160362311 160362468 -2237462 + LTR23 LTR ERV1 276 436 -1 1348 148 48 139 chrX 160362747 160363079 -2236851 - AluJo SINE Alu 0 302 1 1087 184 9 18 chrX 160363084 160363301 -2236629 - L1MB3 LINE L1 -2 6181 5967 517 270 56 6 chrX 160363607 160363785 -2236145 + L1M4 LINE L1 2184 2370 -3776 226 294 0 0 chrX 160363808 160363893 -2236037 + L1M4 LINE L1 2463 2547 -3599 2502 61 0 0 chrX 160363894 160364205 -2235725 - AluY SINE Alu 0 311 1 422 310 152 0 chrX 160364279 160364476 -2235454 - L1ME LINE L1 -561 5603 5377 1200 99 0 0 chrX 160364777 160364978 -2234952 + (TG)n Simple_repeat Simple_repeat 1 201 0 1624 158 3 27 chrX 160364978 160365270 -2234660 - AluJb SINE Alu -27 285 1 2311 59 0 0 chrX 160365438 160365728 -2234202 + AluY SINE Alu 6 295 -16 261 346 40 10 chrX 160365795 160365896 -2234034 + L2 LINE L2 3184 3287 -26 1737 142 24 3 chrX 160366049 160366338 -2233592 + AluJo SINE Alu 1 295 -17 438 146 0 12 chrX 160366338 160366420 -2233510 + MER4A LTR ERV1 18 98 -566 * 1432 146 82 17 chrX 160366416 160366744 -2233186 + MER4A LTR ERV1 257 664 0 3443 162 60 25 chrX 160366790 160367555 -2232375 - L1MA8 LINE L1 -179 6112 5321 732 202 8 0 chrX 160367559 160367683 -2232247 - AluJb SINE Alu -18 294 170 1031 96 0 0 chrX 160367688 160367824 -2232106 + AluSq/x SINE Alu 1 136 -176 1821 112 9 81 chrX 160367825 160368146 -2231784 + AluSq SINE Alu 3 300 -13 371 349 33 47 chrX 160368188 160368400 -2231530 + L1M4 LINE L1 4016 4224 -1922 2385 94 0 0 chrX 160368722 160369031 -2230899 - AluSc SINE Alu 0 309 1 2202 125 0 0 chrX 160369049 160369360 -2230570 - AluSx SINE Alu -1 311 1 675 188 30 23 chrX 160369392 160369525 -2230405 - AluJo SINE Alu -174 138 5 274 246 136 25 chrX 160369805 160369923 -2230007 + MER110 LTR ERV1 23 153 -338 616 167 0 0 chrX 160370050 160370158 -2229772 + MER110 LTR ERV1 384 491 0 459 86 0 0 chrX 160370223 160370293 -2229637 - MER41B LTR ERV1 -84 551 482 2190 82 14 0 chrX 160370666 160370958 -2228972 - AluSp SINE Alu -17 296 1 1810 88 0 0 chrX 160370958 160371197 -2228733 - AluSg1 SINE Alu -12 297 58 1932 101 63 11 chrX 160371216 160371503 -2228427 - AluSx SINE Alu -9 303 2 400 301 49 16 chrX 160371507 160371630 -2228300 - L1M4 LINE L1 -2696 3450 3324 2034 107 4 4 chrX 160371665 160371946 -2227984 + AluJb SINE Alu 1 281 -31 198 0 0 0 chrX 160372294 160372316 -2227614 + (T)n Simple_repeat Simple_repeat 1 22 0 2183 99 3 0 chrX 160372978 160373271 -2226659 + AluSx SINE Alu 5 298 -14 1363 210 23 34 chrX 160373275 160373482 -2226448 + L1MB7 LINE L1 5827 6031 -153 2132 105 0 0 chrX 160373482 160373818 -2226112 - AluSx SINE Alu 0 336 1 1363 210 23 34 chrX 160373818 160373962 -2225968 + L1MB7 LINE L1 6031 6175 -9 1488 177 28 7 chrX 160373975 160374257 -2225673 + AluJo SINE Alu 1 288 -24 311 282 68 34 chrX 160374719 160374836 -2225094 + L1MEc LINE L1 2125 2245 -4151 398 184 0 0 chrX 160374911 160374987 -2224943 + L1MB4 LINE L1 6105 6180 0 2048 148 7 0 chrX 160375108 160375446 -2224484 - AluSx SINE Alu 0 340 1 225 0 0 0 chrX 160375448 160375473 -2224457 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2318 60 0 0 chrX 160375473 160375755 -2224175 - AluY SINE Alu -29 282 1 2389 76 7 0 chrX 160375777 160376080 -2223850 - AluY SINE Alu -6 305 1 351 155 165 0 chrX 160376082 160376179 -2223751 - L1MA10 LINE L1 -7 6327 6215 929 142 0 0 chrX 160376192 160376333 -2223597 + AluJo SINE Alu 1 141 -171 507 282 114 20 chrX 160376471 160376705 -2223225 + L1ME3 LINE L1 5646 5915 -247 2100 147 141 0 chrX 160376705 160377080 -2222850 - MSTA LTR MaLR 0 428 1 507 282 114 20 chrX 160377080 160377143 -2222787 + L1ME3 LINE L1 5915 5971 -191 230 366 47 16 chrX 160377152 160377343 -2222587 + MLT1F1 LTR MaLR 29 225 -342 422 299 39 0 chrX 160377426 160377580 -2222350 + MLT1G1 LTR MaLR 436 595 0 303 264 9 28 chrX 160377585 160377691 -2222239 + L1ME3 LINE L1 6049 6152 -10 616 316 196 34 chrX 160377711 160378393 -2221537 - L2 LINE L2 -849 2465 1651 2349 92 7 0 chrX 160378393 160378699 -2221231 + AluSx SINE Alu 1 308 -4 616 316 196 34 chrX 160378699 160378760 -2221170 - L2 LINE L2 -1663 1651 1601 350 325 75 6 chrX 160378836 160378996 -2220934 + L1MEc LINE L1 124 294 -6102 421 216 216 0 chrX 160378998 160379188 -2220742 + L1MEc LINE L1 2093 2323 -4073 2242 103 0 16 chrX 160379190 160379501 -2220429 + AluSx SINE Alu 1 306 -6 2219 107 0 0 chrX 160379501 160379798 -2220132 + AluSq SINE Alu 1 298 -15 2268 91 3 7 chrX 160379813 160380120 -2219810 + AluSq SINE Alu 1 306 -7 328 192 134 48 chrX 160380121 160380168 -2219762 + L1M4 LINE L1 4282 4324 -1822 2158 128 0 0 chrX 160380168 160380474 -2219456 - AluJb SINE Alu -5 307 2 328 192 134 48 chrX 160380474 160380574 -2219356 + L1M4 LINE L1 4324 4431 -1715 1853 141 0 17 chrX 160381287 160381585 -2218345 - AluJb SINE Alu -19 293 1 859 201 11 0 chrX 160382234 160382408 -2217522 - AluJb SINE Alu -3 309 134 189 0 0 0 chrX 160384567 160384588 -2215342 + (A)n Simple_repeat Simple_repeat 1 21 0 683 138 28 0 chrX 160384588 160384697 -2215233 - FLAM_C SINE Alu -26 117 6 1185 150 150 0 chrX 160384724 160384944 -2214986 - AluJo SINE Alu -21 291 39 333 327 35 0 chrX 160384953 160385066 -2214864 - L2 LINE L2 -15 3298 3182 295 235 153 10 chrX 160385683 160385781 -2214149 - MIR SINE MIR -67 141 30 349 316 79 0 chrX 160386385 160386524 -2213406 - MER69A DNA AcHobo 0 177 28 269 253 20 50 chrX 160387304 160387403 -2212527 + MIR SINE MIR 53 148 -60 2292 112 0 0 chrX 160387709 160388021 -2211909 + AluSx SINE Alu 1 312 0 22 56 0 0 chrX 160389830 160389866 -2210064 + GC_rich Low_complexity Low_complexity 1 36 0 42 92 0 0 chrX 160389962 160390081 -2209849 + GC_rich Low_complexity Low_complexity 1 119 0 27 49 0 0 chrX 160390200 160390241 -2209689 + GC_rich Low_complexity Low_complexity 1 41 0 204 97 0 0 chrX 160394921 160394952 -2204978 + (T)n Simple_repeat Simple_repeat 1 31 0 200 200 21 84 chrX 160399253 160399348 -2200582 + GA-rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chrX 160400440 160400461 -2199469 + AT_rich Low_complexity Low_complexity 1 21 0 333 307 73 22 chrX 160403224 160403361 -2196569 + MIR SINE MIR 1 144 -118 2049 99 44 0 chrX 160404432 160404726 -2195204 - AluSx SINE Alu -5 307 1 850 302 37 3 chrX 160405123 160405418 -2194512 + L1MC4a LINE L1 5632 5936 -1872 384 265 161 24 chrX 160405427 160405638 -2194292 + L1MC4a LINE L1 5986 6225 -1583 815 197 0 64 chrX 160405644 160405786 -2194144 + FRAM SINE Alu 1 130 -182 1916 126 54 0 chrX 160405786 160406080 -2193850 - AluSq SINE Alu -3 310 1 815 197 0 64 chrX 160406080 160406125 -2193805 + FRAM SINE Alu 130 176 0 303 268 228 5 chrX 160406336 160406560 -2193370 - L2 LINE L2 -653 2661 2388 1740 112 108 4 chrX 160406563 160406840 -2193090 + AluSx SINE Alu 1 306 -6 258 73 0 207 chrX 160407002 160407030 -2192900 - L1MB4 LINE L1 -1 6179 6147 1771 131 3 52 chrX 160407030 160407335 -2192595 + AluJb SINE Alu 1 290 -22 402 21 0 0 chrX 160407335 160407382 -2192548 + (TA)n Simple_repeat Simple_repeat 2 48 0 258 73 0 207 chrX 160407382 160407434 -2192496 - L1MB4 LINE L1 -31 6149 6115 2201 88 0 26 chrX 160407442 160407750 -2192180 - AluSx SINE Alu -12 300 1 1821 156 40 7 chrX 160408002 160408304 -2191626 + L1PB4 LINE L1 5844 6155 -1 2300 103 0 3 chrX 160408518 160408829 -2191101 + AluSx SINE Alu 2 311 -1 210 378 25 17 chrX 160408924 160409043 -2190887 - MIR3 SINE MIR -3 205 86 1957 139 3 10 chrX 160409529 160409832 -2190098 + AluSx SINE Alu 1 301 -11 506 292 259 11 chrX 160410442 160410894 -2189036 + L1MC4 LINE L1 7326 7889 -153 1089 86 26 0 chrX 160411076 160411227 -2188703 + AluSg SINE Alu 1 155 -155 2681 191 21 25 chrX 160412626 160412729 -2187201 + L1MB5 LINE L1 5566 5668 -506 2179 105 0 19 chrX 160412729 160413043 -2186887 + AluSx SINE Alu 2 309 -3 2681 191 21 25 chrX 160413043 160413504 -2186426 + L1MB5 LINE L1 5668 6128 -46 367 130 39 13 chrX 160413529 160413606 -2186324 + L1MB7 LINE L1 6090 6168 -16 926 186 177 0 chrX 160413958 160414184 -2185746 - L1MB5 LINE L1 0 6174 5909 775 156 78 0 chrX 160414246 160414387 -2185543 + BC200 scRNA scRNA 8 159 -41 612 136 146 18 chrX 160414410 160414520 -2185410 - FLAM_A SINE Alu -9 124 1 2233 76 0 17 chrX 160415727 160416028 -2183902 + AluSg SINE Alu 1 296 -14 423 0 0 0 chrX 160416095 160416142 -2183788 + (TG)n Simple_repeat Simple_repeat 1 47 0 981 242 78 23 chrX 160417241 160417625 -2182305 + HAL1b LINE L1 3 407 -941 591 242 85 61 chrX 160417674 160417966 -2181964 - L2 LINE L2 -222 3091 2807 791 205 106 0 chrX 160417966 160418127 -2181803 - MER45A DNA AcHobo 0 178 1 591 242 85 61 chrX 160418127 160418220 -2181710 - L2 LINE L2 -506 2807 2693 1984 141 3 3 chrX 160418220 160418519 -2181411 + AluJo SINE Alu 1 299 -13 591 242 85 61 chrX 160418519 160418557 -2181373 - L2 LINE L2 -620 2693 2657 296 214 68 58 chrX 160418680 160418783 -2181147 - LTR16A LTR ERVL -228 222 119 277 185 0 0 chrX 160418990 160419044 -2180886 - L2 LINE L2 -1007 2307 2254 194 280 27 0 chrX 160419106 160419181 -2180749 - L2 LINE L2 -1198 2116 2040 551 238 20 64 chrX 160419185 160419252 -2180678 - LTR67 LTR ERVL -2 555 487 665 181 31 0 chrX 160419252 160419379 -2180551 + L1MB3 LINE L1 6046 6176 -7 551 238 20 64 chrX 160419379 160419513 -2180417 - LTR67 LTR ERVL -70 487 363 857 271 29 0 chrX 160419689 160419899 -2180031 - MER58A DNA MER1_type -8 216 1 297 370 76 0 chrX 160420092 160420354 -2179576 - L2 LINE L2 -1405 1909 1628 234 330 78 0 chrX 160420387 160420502 -2179428 - L2 LINE L2 -2416 898 775 2290 88 0 0 chrX 160422650 160422955 -2176975 - AluSg SINE Alu -5 305 1 2214 96 3 0 chrX 160422961 160423254 -2176676 - AluSp SINE Alu -19 294 1 1902 185 35 16 chrX 160423354 160423721 -2176209 - MLT1A2 LTR MaLR 0 374 1 751 218 21 0 chrX 160423795 160423966 -2175964 - AluJb SINE Alu 0 310 137 426 86 129 0 chrX 160423974 160424044 -2175886 + L1MB3 LINE L1 6098 6176 -7 347 281 72 29 chrX 160424047 160424186 -2175744 + L1MCa LINE L1 2306 2450 -3976 2415 41 0 50 chrX 160424210 160424529 -2175401 + AluY SINE Alu 1 303 -8 2152 92 7 3 chrX 160424539 160424833 -2175097 + AluSq SINE Alu 1 295 -18 2010 142 0 3 chrX 160424913 160425224 -2174706 + AluJb SINE Alu 1 310 -2 753 304 99 48 chrX 160425226 160425658 -2174272 + L1MCa LINE L1 2626 3034 -3392 2205 91 7 0 chrX 160425658 160425956 -2173974 - AluSq SINE Alu -3 310 11 753 304 99 48 chrX 160425956 160426233 -2173697 + L1MCa LINE L1 3034 3295 -3131 1940 125 3 7 chrX 160426233 160426554 -2173376 + AluSx SINE Alu 1 320 0 753 304 99 48 chrX 160426554 160426855 -2173075 + L1MCa LINE L1 3295 3692 -2734 392 279 43 5 chrX 160427220 160427441 -2172489 - L1ME LINE L1 -666 5500 5275 306 296 38 30 chrX 160427776 160427908 -2172022 - MIR SINE MIR -122 140 8 368 261 133 95 chrX 160427962 160428203 -2171727 - LTR67 LTR ERVL -8 549 300 327 209 15 0 chrX 160428354 160428421 -2171509 + MLT1J LTR MaLR 1 68 -443 23 33 0 0 chrX 160429515 160429545 -2170385 + AT_rich Low_complexity Low_complexity 1 30 0 836 273 239 57 chrX 160430655 160432650 -2167280 - L2 LINE L2 -46 3267 887 2202 103 0 0 chrX 160432779 160433081 -2166849 - AluSx SINE Alu -10 302 1 2161 105 0 3 chrX 160433113 160433419 -2166511 + AluSq SINE Alu 1 305 -8 902 237 95 35 chrX 160433895 160434233 -2165697 + MLT1C LTR MaLR 44 401 -66 535 245 148 10 chrX 160434368 160434666 -2165264 + L2 LINE L2 1533 1871 -1443 318 26 0 0 chrX 160435020 160435059 -2164871 + (CAGAC)n Simple_repeat Simple_repeat 1 39 0 226 267 187 0 chrX 160435106 160435181 -2164749 - MER5A DNA MER1_type -72 117 29 1699 126 0 32 chrX 160435723 160436001 -2163929 + AluJo SINE Alu 30 298 -14 325 206 184 28 chrX 160436002 160436143 -2163787 - L1M4 LINE L1 -801 5345 5183 1715 142 7 30 chrX 160436150 160436453 -2163477 - AluJb SINE Alu -16 296 1 725 183 0 29 chrX 160436473 160436610 -2163320 - FLAM_A SINE Alu 0 133 1 1157 222 114 41 chrX 160436612 160436731 -2163199 - L1M4 LINE L1 -942 5204 5095 2136 111 0 0 chrX 160436731 160437020 -2162910 + AluSx SINE Alu 1 289 -23 1157 222 114 41 chrX 160437020 160437145 -2162785 - L1M4 LINE L1 -1051 5095 4981 1986 182 59 37 chrX 160437145 160437546 -2162384 + MLT1C LTR MaLR 1 415 -52 1856 122 25 7 chrX 160437546 160437832 -2162098 - AluSx SINE Alu -21 291 1 1986 182 59 37 chrX 160437832 160437885 -2162045 + MLT1C LTR MaLR 415 465 -2 1157 222 114 41 chrX 160437885 160438098 -2161832 - L1M4 LINE L1 -1165 4981 4785 1942 137 7 0 chrX 160438098 160438398 -2161532 - AluSx SINE Alu -10 302 1 1157 222 114 41 chrX 160438398 160439064 -2160866 - L1M4 LINE L1 -1361 4785 3872 1985 128 10 0 chrX 160439064 160439368 -2160562 - AluSx SINE Alu -5 307 1 1157 222 114 41 chrX 160439368 160439463 -2160467 - L1M4 LINE L1 -2274 3872 3785 4968 126 30 38 chrX 160439463 160439750 -2160180 + Tigger1 DNA MER2_type 1 289 -2129 2237 92 0 3 chrX 160439750 160440055 -2159875 + AluSx SINE Alu 1 304 -8 4968 126 30 38 chrX 160440055 160440067 -2159863 + Tigger1 DNA MER2_type 289 300 -2118 2135 107 10 7 chrX 160440067 160440377 -2159553 + AluSx SINE Alu 1 311 -1 4968 126 30 38 chrX 160440377 160440884 -2159046 + Tigger1 DNA MER2_type 300 801 -1617 869 218 0 0 chrX 160440954 160441110 -2158820 - AluJo SINE Alu -40 272 117 272 303 45 28 chrX 160441114 160441229 -2158701 + L1MC4a LINE L1 6413 6534 -1274 1904 143 0 25 chrX 160441229 160441544 -2158386 + AluJo SINE Alu 1 307 -5 272 303 45 28 chrX 160441544 160441606 -2158324 + L1MC4a LINE L1 6534 6593 -1215 305 105 0 0 chrX 160441620 160441658 -2158272 + FLAM_C SINE Alu 5 42 -91 810 92 25 17 chrX 160441710 160441829 -2158101 + FLAM_C SINE Alu 24 143 0 924 224 104 72 chrX 160441833 160442785 -2157145 + L1MC5 LINE L1 6613 7533 -509 779 165 0 0 chrX 160442785 160442906 -2157024 + FLAM_A SINE Alu 1 121 -12 924 224 104 72 chrX 160442906 160443021 -2156909 + L1MC5 LINE L1 7533 7643 -399 2152 91 7 26 chrX 160443021 160443330 -2156600 + AluSx SINE Alu 1 303 -9 924 224 104 72 chrX 160443330 160443683 -2156247 + L1MC5 LINE L1 7643 7983 -59 911 243 141 65 chrX 160443718 160443766 -2156164 + HAL1 LINE L1 1084 1127 -1380 2014 99 54 0 chrX 160443766 160444060 -2155870 + AluSx SINE Alu 1 310 -2 911 243 141 65 chrX 160444060 160444550 -2155380 + HAL1 LINE L1 1127 1663 -844 537 283 73 41 chrX 160444552 160444945 -2154985 - MLT1L LTR MaLR -2 613 179 288 247 13 13 chrX 160444995 160445072 -2154858 - MLT1L LTR MaLR -538 77 1 602 239 142 44 chrX 160445073 160445299 -2154631 + HAL1 LINE L1 1664 1911 -596 336 352 55 16 chrX 160445651 160445833 -2154097 + HAL1b LINE L1 720 908 -440 2162 106 0 0 chrX 160445860 160446152 -2153778 + AluSx SINE Alu 1 292 -20 434 290 72 19 chrX 160446184 160446446 -2153484 + HAL1 LINE L1 2228 2503 -4 600 266 123 83 chrX 160446508 160446754 -2153176 + L2 LINE L2 2804 3077 -195 2089 142 39 6 chrX 160446754 160447091 -2152839 - MER7A DNA MER2_type 0 346 1 600 266 123 83 chrX 160447091 160447291 -2152639 + L2 LINE L2 3077 3268 -4 3640 72 2 0 chrX 160447522 160447992 -2151938 + L1PB1 LINE L1 5680 6150 -1 21 0 0 0 chrX 160447997 160448018 -2151912 + AT_rich Low_complexity Low_complexity 1 21 0 928 256 123 58 chrX 160448119 160448231 -2151699 - L2 LINE L2 -710 2604 2501 1896 85 81 7 chrX 160448231 160448503 -2151427 + AluSg SINE Alu 1 292 -18 2756 10 0 0 chrX 160448505 160448814 -2151116 + AluYb8 SINE Alu 1 309 -9 928 256 123 58 chrX 160448814 160449080 -2150850 - L2 LINE L2 -813 2501 2198 293 174 137 56 chrX 160449136 160449297 -2150633 + L1ME4a LINE L1 5944 6117 -4 1759 162 13 10 chrX 160449301 160449610 -2150320 + AluJb SINE Alu 1 310 -2 352 258 107 44 chrX 160449658 160449754 -2150176 + L1ME4a LINE L1 5835 5946 -175 1704 155 24 7 chrX 160449754 160450044 -2149886 + AluJb SINE Alu 1 295 -17 352 258 107 44 chrX 160450044 160450106 -2149824 + L1ME4a LINE L1 5946 6003 -118 2068 93 7 0 chrX 160450108 160450429 -2149501 + AluSc SINE Alu 1 323 0 822 164 0 0 chrX 160450659 160450781 -2149149 - FLAM_A SINE Alu -11 122 1 1608 173 148 42 chrX 160450828 160451172 -2148758 - Charlie4a DNA MER1_type -1453 508 202 2354 84 0 0 chrX 160451172 160451471 -2148459 - AluSx SINE Alu -13 299 1 895 145 0 0 chrX 160451474 160451605 -2148325 - AluJo/FLAM SINE Alu -170 132 2 1608 173 148 42 chrX 160451605 160451689 -2148241 - Charlie4a DNA MER1_type -1760 201 30 880 103 0 16 chrX 160451801 160451927 -2148003 - FLAM_C SINE Alu -19 124 1 2253 97 0 0 chrX 160452449 160452748 -2147182 - AluSx SINE Alu -13 299 1 21 0 0 0 chrX 160453760 160453781 -2146149 + AT_rich Low_complexity Low_complexity 1 21 0 2069 107 40 0 chrX 160454115 160454415 -2145515 + AluSx SINE Alu 1 312 0 318 287 112 137 chrX 160454458 160454859 -2145071 + L2 LINE L2 2859 3249 -23 1505 175 0 63 chrX 160455337 160455668 -2144262 + AluJo SINE Alu 2 311 -1 343 265 75 27 chrX 160455673 160455820 -2144110 + L1MC4a LINE L1 5758 5911 -1897 1044 154 28 28 chrX 160455908 160456122 -2143808 + L1MB3 LINE L1 5951 6164 -19 2333 49 0 3 chrX 160456131 160456419 -2143511 - AluY SINE Alu -24 287 1 28 0 0 0 chrX 160456421 160456449 -2143481 + AT_rich Low_complexity Low_complexity 1 28 0 2261 79 0 3 chrX 160456468 160456758 -2143172 - AluSc SINE Alu -20 289 1 2180 114 0 0 chrX 160456861 160457160 -2142770 - AluSq SINE Alu -14 299 1 2163 116 3 0 chrX 160457169 160457472 -2142458 - AluSx SINE Alu -8 304 1 889 132 0 107 chrX 160457735 160457932 -2141998 - FRAM SINE Alu 0 176 1 284 232 116 0 chrX 160458307 160458376 -2141554 + L2 LINE L2 3196 3272 0 2187 107 0 0 chrX 160458658 160458958 -2140972 - AluSx SINE Alu -12 300 1 2482 52 0 3 chrX 160459068 160459377 -2140553 + AluY SINE Alu 1 308 -3 228 315 94 8 chrX 160459568 160459695 -2140235 + L1ME4a LINE L1 5463 5600 -2208 236 227 113 64 chrX 160459854 160459891 -2140039 + L1ME4a LINE L1 5878 5912 -209 2166 86 4 0 chrX 160459891 160460201 -2139729 + AluSx SINE Alu 1 311 0 236 227 113 64 chrX 160460201 160460303 -2139627 + L1ME4a LINE L1 5912 6025 -96 2181 106 0 0 chrX 160460344 160460646 -2139284 - AluSx SINE Alu -10 302 1 239 0 32 0 chrX 160461577 160461608 -2138322 + (CAA)n Simple_repeat Simple_repeat 2 33 0 192 152 0 0 chrX 160462286 160462319 -2137611 + T-rich Low_complexity Low_complexity 1 33 0 262 300 118 18 chrX 160463568 160463678 -2136252 + MIR3 SINE MIR 78 198 -10 2119 79 6 70 chrX 160463718 160464048 -2135882 + AluSg1 SINE Alu 1 309 0 29 28 0 0 chrX 160467421 160467457 -2132473 + GC_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chrX 160467513 160467540 -2132390 + GC_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chrX 160467844 160467864 -2132066 + (CGG)n Simple_repeat Simple_repeat 3 22 0 22 35 0 0 chrX 160467993 160468022 -2131908 + GC_rich Low_complexity Low_complexity 1 29 0 1341 269 212 26 chrX 160468953 160469357 -2130573 - L2 LINE L2 -19 3294 2967 1763 136 7 4 chrX 160469357 160469636 -2130294 - AluJb SINE Alu -32 280 1 1341 269 212 26 chrX 160469636 160470118 -2129812 - L2 LINE L2 -346 2967 2264 544 243 203 67 chrX 160470162 160470579 -2129351 + L1M4 LINE L1 3071 3430 -2716 261 0 0 0 chrX 160470579 160470608 -2129322 + (GA)n Simple_repeat Simple_repeat 2 30 0 544 243 203 67 chrX 160470608 160470968 -2128962 + L1M4 LINE L1 3430 3950 -2196 1431 129 4 37 chrX 160470990 160471231 -2128699 + AluJo SINE Alu 74 306 -6 2040 97 0 17 chrX 160471234 160471522 -2128408 + AluSc SINE Alu 1 283 -26 537 144 0 0 chrX 160471522 160471612 -2128318 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 5579 131 27 30 chrX 160471630 160471703 -2128227 + L1MA6 LINE L1 5324 5396 -904 1761 168 7 3 chrX 160471703 160471998 -2127932 + AluJo SINE Alu 2 300 -12 195 42 0 0 chrX 160471998 160472022 -2127908 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 5579 131 27 30 chrX 160472030 160472712 -2127218 + L1MA6 LINE L1 5396 6078 -222 1921 126 14 17 chrX 160472712 160473006 -2126924 + AluSx SINE Alu 1 293 -19 5579 131 27 30 chrX 160473006 160473224 -2126706 + L1MA6 LINE L1 6078 6295 -5 284 321 22 44 chrX 160473355 160473626 -2126304 + L1M4 LINE L1 4339 4603 -1543 2407 72 0 0 chrX 160473822 160474126 -2125804 + AluY SINE Alu 1 304 -7 378 139 16 6 chrX 160474385 160474636 -2125294 + AluJo SINE Alu 1 297 -5 666 109 0 0 chrX 160474793 160474912 -2125018 + (CA)n Simple_repeat Simple_repeat 2 120 0 2217 109 0 3 chrX 160474971 160475283 -2124647 + AluSx SINE Alu 1 311 -1 1395 249 98 50 chrX 160475835 160476711 -2123219 + HAL1 LINE L1 812 1955 -552 2424 66 0 0 chrX 160476711 160477013 -2122917 + AluSx SINE Alu 1 302 -10 1395 249 98 50 chrX 160477013 160477146 -2122784 + HAL1 LINE L1 1955 2080 -427 2325 60 3 3 chrX 160477159 160477460 -2122470 + AluY SINE Alu 6 306 -5 2097 128 0 10 chrX 160477482 160477795 -2122135 + AluSx SINE Alu 1 310 -2 1020 89 19 25 chrX 160478326 160478483 -2121447 - AluSg/x SINE Alu -10 302 147 1441 104 0 0 chrX 160478483 160478675 -2121255 - MSTA LTR MaLR -236 192 1 283 248 26 4 chrX 160478885 160478982 -2120948 - LTR33 LTR ERVL -345 176 61 583 118 21 0 chrX 160479031 160479124 -2120806 - L1MC1 LINE L1 0 6333 6239 4327 121 3 2 chrX 160479124 160479753 -2120177 - L1MC1 LINE L1 -385 5948 5319 1043 133 0 6 chrX 160479755 160479944 -2119986 - AluSg/x SINE Alu 0 316 129 2141 75 72 0 chrX 160479953 160480245 -2119685 - AluSq SINE Alu 0 313 1 1176 223 49 0 chrX 160480248 160480513 -2119417 - L1MCa LINE L1 -2295 4131 3854 1419 174 188 0 chrX 160480514 160480807 -2119123 - MER7A DNA MER2_type 0 346 1 3805 210 37 55 chrX 160480811 160480927 -2119003 - L1MCa LINE L1 -2576 3850 3733 2054 131 0 10 chrX 160480927 160481239 -2118691 + AluSx SINE Alu 1 309 -3 3805 210 37 55 chrX 160481239 160481578 -2118352 - L1MCa LINE L1 -2693 3733 3390 989 149 0 0 chrX 160481578 160481719 -2118211 - FLAM_C SINE Alu -2 141 1 3805 210 37 55 chrX 160481719 160482469 -2117461 - L1MCa LINE L1 -3036 3390 2628 2314 72 48 3 chrX 160482469 160482761 -2117169 - AluSp SINE Alu -8 305 1 3805 210 37 55 chrX 160482761 160482984 -2116946 - L1MCa LINE L1 -3798 2628 2403 2250 102 0 0 chrX 160482984 160483300 -2116630 - AluSx SINE Alu 0 316 1 3805 210 37 55 chrX 160483300 160484062 -2115868 - L1MCa LINE L1 -4023 2403 1529 2074 134 99 3 chrX 160484063 160484428 -2115502 - L1MCa LINE L1 -5953 473 74 609 252 184 13 chrX 160485837 160486146 -2113784 - HAL1 LINE L1 -637 1870 1509 464 59 15 0 chrX 160486148 160486216 -2113714 + (TG)n Simple_repeat Simple_repeat 1 69 0 586 253 142 14 chrX 160486297 160486647 -2113283 + MER74B LTR ERVL 65 548 -74 458 278 83 0 chrX 160486703 160486883 -2113047 - HAL1 LINE L1 -1010 1497 1303 681 286 59 16 chrX 160486905 160487160 -2112770 - HAL1 LINE L1 -1832 675 410 227 226 0 0 chrX 160487180 160487233 -2112697 + MER81 DNA DNA 20 72 -42 2076 155 7 0 chrX 160487319 160487628 -2112302 - AluSx SINE Alu -1 311 1 1315 242 55 29 chrX 160487889 160488307 -2111623 + L1ME1 LINE L1 5692 6120 -46 239 65 0 109 chrX 160488314 160488360 -2111570 - Alu SINE Alu -175 127 87 680 122 0 0 chrX 160488370 160488468 -2111462 - FLAM_A SINE Alu -44 98 1 1781 168 10 14 chrX 160488493 160488784 -2111146 - AluJo SINE Alu -22 290 1 341 285 44 0 chrX 160488915 160489052 -2110878 - L1M4 LINE L1 -1062 5084 4942 2395 92 7 0 chrX 160489067 160489371 -2110559 - AluSx SINE Alu 0 312 7 1568 273 42 42 chrX 160489374 160489577 -2110353 - L1M4 LINE L1 -2058 4088 3886 1914 153 20 0 chrX 160489577 160489742 -2110188 - AluJb SINE Alu -12 300 125 387 0 0 0 chrX 160489742 160489785 -2110145 + (TG)n Simple_repeat Simple_repeat 2 44 0 1914 153 20 0 chrX 160489785 160489913 -2110017 - AluJb SINE Alu -187 125 1 1568 273 42 42 chrX 160489913 160490029 -2109901 - L1M4 LINE L1 -2260 3886 3771 2425 96 0 3 chrX 160490029 160490341 -2109589 - AluSx SINE Alu -1 311 1 1568 273 42 42 chrX 160490341 160490852 -2109078 - L1M4 LINE L1 -2374 3772 3257 2387 65 4 0 chrX 160491173 160491452 -2108478 - AluSg SINE Alu -30 280 1 886 188 0 57 chrX 160492997 160493173 -2106757 + FRAM SINE Alu 1 166 -10 2384 85 0 28 chrX 160493684 160494002 -2105928 + AluSx SINE Alu 1 309 -3 1006 226 106 20 chrX 160494293 160494643 -2105287 + MER69 DNA AcHobo 2143 2522 -4 22 0 0 0 chrX 160494670 160494692 -2105238 + AT_rich Low_complexity Low_complexity 1 22 0 2016 148 0 16 chrX 160494767 160495101 -2104829 + AluSx SINE Alu 1 312 0 8268 158 28 26 chrX 160495449 160497011 -2102919 + L1M1 LINE L1 12 1577 -5988 2505 113 39 0 chrX 160497082 160497488 -2102442 + L1M1 LINE L1 2698 3119 -4446 827 213 0 0 chrX 160497490 160497631 -2102299 + FRAM SINE Alu 26 166 -10 2098 109 0 45 chrX 160497634 160497946 -2101984 + AluSq SINE Alu 1 298 -15 3147 131 57 22 chrX 160497946 160498187 -2101743 + L1MA6 LINE L1 5332 5563 -737 2076 124 6 40 chrX 160498187 160498330 -2101600 + AluJb SINE Alu 1 147 -165 2465 84 7 0 chrX 160498330 160498638 -2101292 + AluSp SINE Alu 1 310 -3 2076 124 6 40 chrX 160498638 160498817 -2101113 + AluJb SINE Alu 147 312 0 3147 131 57 22 chrX 160498817 160499169 -2100761 + L1MA6 LINE L1 5563 5946 -354 679 194 0 0 chrX 160499174 160499298 -2100632 + AluJo SINE Alu 6 129 -183 389 232 24 0 chrX 160499298 160499380 -2100550 - L1MC4 LINE L1 -1346 6696 6613 1153 126 0 30 chrX 160499383 160499550 -2100380 + AluJo SINE Alu 132 293 -19 1002 216 57 57 chrX 160499577 160499721 -2100209 + L1MA6 LINE L1 5999 6142 -158 2202 96 3 7 chrX 160499721 160500014 -2099916 + AluSx SINE Alu 21 312 0 1002 216 57 57 chrX 160500014 160500170 -2099760 + L1MA6 LINE L1 6141 6299 -1 2394 88 10 0 chrX 160500691 160500996 -2098934 - AluSg SINE Alu 0 310 3 1932 152 0 23 chrX 160501255 160501565 -2098365 - AluJo SINE Alu -9 303 1 306 0 0 0 chrX 160501639 160501673 -2098257 + (TG)n Simple_repeat Simple_repeat 1 34 0 2197 121 0 0 chrX 160501673 160501954 -2097976 - AluSx SINE Alu -31 281 1 1867 132 11 11 chrX 160502688 160503000 -2096930 + AluJo SINE Alu 3 314 0 1628 198 11 16 chrX 160503049 160503413 -2096517 + L1MB5 LINE L1 5813 6174 0 2033 128 13 13 chrX 160503423 160503727 -2096203 + AluJb SINE Alu 1 304 -8 2402 99 0 10 chrX 160504134 160504447 -2095483 - AluSq SINE Alu -3 310 1 1173 244 106 44 chrX 160504495 160504996 -2094934 + MLT1H LTR MaLR 1 532 -17 2431 100 3 0 chrX 160505410 160505721 -2094209 + AluSx SINE Alu 1 312 0 522 116 11 21 chrX 160506622 160506717 -2093213 + L1MB3 LINE L1 6090 6183 0 21 0 0 0 chrX 160507025 160507046 -2092884 + GC_rich Low_complexity Low_complexity 1 21 0 1921 147 37 3 chrX 160507570 160507870 -2092060 - AluJo SINE Alu -2 310 1 321 200 33 11 chrX 160508154 160508244 -2091686 - L1MB2 LINE L1 -197 5974 5883 2324 91 0 23 chrX 160508402 160508709 -2091221 + AluSx SINE Alu 1 300 -12 671 264 145 22 chrX 160509038 160509611 -2090319 + L2 LINE L2 2467 3140 -173 250 234 160 11 chrX 160509737 160509831 -2090099 - MIR SINE MIR -32 230 123 539 261 205 3 chrX 160510168 160510415 -2089515 + L1MB3 LINE L1 5873 6175 -8 192 281 88 26 chrX 160511290 160511404 -2088526 - MIR3 SINE MIR -32 176 56 227 260 49 65 chrX 160511748 160511871 -2088059 - L2 LINE L2 -158 3114 2994 1947 171 29 38 chrX 160511886 160512272 -2087658 - L1MB3 LINE L1 -71 6112 5764 1621 145 0 8 chrX 160512272 160512513 -2087417 - AluJb SINE Alu -73 239 1 1947 171 29 38 chrX 160512513 160512723 -2087207 - L1MB3 LINE L1 -419 5764 5554 1693 247 25 5 chrX 160512720 160513161 -2086769 - L1MB7 LINE L1 -109 6075 5626 * 2165 95 0 0 chrX 160515403 160515676 -2084254 + AluSc SINE Alu 1 273 -36 186 71 0 0 chrX 160515682 160515710 -2084220 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 1260 239 156 32 chrX 160515966 160516536 -2083394 - L1MC5 LINE L1 -28 7933 7293 262 286 13 0 chrX 160516548 160516625 -2083305 - L1MC5 LINE L1 -722 7239 7162 2184 84 7 3 chrX 160516844 160517152 -2082778 - AluSx SINE Alu 0 309 1 255 250 29 0 chrX 160517953 160518021 -2081909 + MLT1K LTR MaLR 507 576 -12 1522 146 7 71 chrX 160518187 160518468 -2081462 + AluJo SINE Alu 20 282 -30 2109 87 14 31 chrX 160518471 160518790 -2081140 - AluSx SINE Alu 0 314 1 1074 110 6 6 chrX 160518826 160518989 -2080941 - MLT1B LTR MaLR -227 163 1 2684 61 0 0 chrX 160519143 160519454 -2080476 + AluY SINE Alu 1 311 0 2169 125 3 13 chrX 160519465 160519777 -2080153 + AluSx SINE Alu 1 309 -3 634 216 81 32 chrX 160519794 160519979 -2079951 - MLT1A1 LTR MaLR -28 337 144 702 158 33 0 chrX 160520005 160520125 -2079805 - FLAM_C SINE Alu -8 125 2 426 181 72 0 chrX 160520132 160520215 -2079715 - FLAM_A SINE Alu -53 89 1 869 121 0 67 chrX 160520216 160520381 -2079549 - MLT1A1 LTR MaLR -207 158 5 1485 207 59 89 chrX 160522298 160522488 -2077442 - Charlie4a DNA MER1_type -1465 496 302 1917 134 21 0 chrX 160522488 160522772 -2077158 + AluJo SINE Alu 14 303 -9 1485 207 59 89 chrX 160522772 160523073 -2076857 - Charlie4a DNA MER1_type -1659 302 20 199 167 0 24 chrX 160523369 160523411 -2076519 + MIR SINE MIR 82 122 -86 582 146 131 23 chrX 160524105 160524187 -2075743 + L1MB3 LINE L1 6039 6141 -42 1926 151 7 13 chrX 160524187 160524485 -2075445 - AluJo SINE Alu -16 296 1 582 146 131 23 chrX 160524485 160524532 -2075398 + L1MB3 LINE L1 6141 6182 -1 468 164 250 0 chrX 160524587 160524703 -2075227 + L1MB5 LINE L1 6030 6174 0 185 222 0 0 chrX 160527960 160527996 -2071934 + MIR SINE MIR 209 244 -18 248 328 115 0 chrX 160527999 160528121 -2071809 - L1MEd LINE L1 -5076 1043 908 1453 198 71 25 chrX 160528480 160528834 -2071096 - MLT1C LTR MaLR 0 467 98 1641 105 16 46 chrX 160531098 160531271 -2068659 + L1MB7 LINE L1 5888 6050 -134 2536 46 3 10 chrX 160531271 160531573 -2068357 + AluY SINE Alu 1 300 -11 1641 105 16 46 chrX 160531573 160531705 -2068225 + L1MB7 LINE L1 6050 6184 0 512 186 26 0 chrX 160531712 160531825 -2068105 + L1MB7 LINE L1 6060 6175 -9 1913 137 13 27 chrX 160531839 160532138 -2067792 + AluJo SINE Alu 1 295 -17 2247 93 7 7 chrX 160533367 160533667 -2066263 - AluSx SINE Alu -12 300 1 613 217 39 140 chrX 160533938 160534418 -2065512 + L1M4c LINE L1 1213 1754 -4628 2486 86 0 0 chrX 160534418 160534721 -2065209 + AluSg SINE Alu 1 303 -7 382 247 84 30 chrX 160534770 160534936 -2064994 + L1MC5 LINE L1 7619 7793 -168 922 144 59 93 chrX 160535428 160535560 -2064370 - L1MB5 LINE L1 0 6174 6064 2564 34 17 0 chrX 160535560 160535852 -2064078 + AluY SINE Alu 1 297 -14 922 144 59 93 chrX 160535852 160535981 -2063949 - L1MB5 LINE L1 -110 6064 5932 2210 110 0 17 chrX 160536251 160536552 -2063378 + AluSx SINE Alu 1 296 -16 772 85 17 0 chrX 160536563 160536681 -2063249 + (TC)n Simple_repeat Simple_repeat 2 121 0 1794 169 0 33 chrX 160536682 160536984 -2062946 - AluJo SINE Alu -20 292 1 448 285 67 17 chrX 160537082 160537261 -2062669 - MIR SINE MIR -59 203 16 367 189 272 0 chrX 160537564 160537700 -2062230 + L1ME2 LINE L1 5244 5416 -743 423 99 0 158 chrX 160537739 160537840 -2062090 + MER20 DNA MER1_type 4 88 -131 1550 215 37 70 chrX 160537843 160537866 -2062064 + MLT1D LTR MaLR 4 26 -479 2191 122 0 7 chrX 160537866 160538169 -2061761 + AluSx SINE Alu 1 301 -11 1550 215 37 70 chrX 160538169 160538638 -2061292 + MLT1D LTR MaLR 26 489 -16 718 175 0 0 chrX 160538655 160538775 -2061155 + MER20 DNA MER1_type 95 214 -5 539 194 97 37 chrX 160538837 160538943 -2060987 + L1ME2 LINE L1 5463 5580 -586 2446 51 14 3 chrX 160538943 160539237 -2060693 - AluSp SINE Alu -16 297 1 539 194 97 37 chrX 160539237 160539264 -2060666 + L1ME2 LINE L1 5580 5604 -562 795 206 237 13 chrX 160539265 160539552 -2060378 + MSTD LTR MaLR 1 396 0 1466 246 122 10 chrX 160539557 160540049 -2059881 + L1ME2 LINE L1 5608 6154 -10 2438 82 3 0 chrX 160540052 160540355 -2059575 + AluSp SINE Alu 1 304 -9 189 195 143 52 chrX 160540391 160540468 -2059462 - L2 LINE L2 -189 3083 3000 1002 278 21 21 chrX 160540479 160540867 -2059063 - MLT1C LTR MaLR -6 461 74 2243 103 10 3 chrX 160540957 160541259 -2058671 + AluSx SINE Alu 1 304 -8 1515 120 127 36 chrX 160542219 160542636 -2057294 + AluJo SINE Alu 3 444 0 3011 217 49 18 chrX 160542685 160543399 -2056531 + L1MB5 LINE L1 5433 6168 -6 2866 151 45 45 chrX 160543414 160543871 -2056059 - MER73 LTR ERVL 0 644 185 2126 123 3 16 chrX 160543871 160544180 -2055750 - AluJb SINE Alu -7 305 1 2866 151 45 45 chrX 160544180 160544366 -2055564 - MER73 LTR ERVL -458 186 1 207 0 0 0 chrX 160545616 160545639 -2054291 + (T)n Simple_repeat Simple_repeat 1 23 0 2359 99 0 0 chrX 160545692 160545995 -2053935 + AluSc SINE Alu 1 303 -6 198 71 0 0 chrX 160547701 160547729 -2052201 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 192 300 0 0 chrX 160547757 160547807 -2052123 - L2 LINE L2 -72 3200 3151 411 248 82 0 chrX 160547879 160547987 -2051943 + MIR SINE MIR 43 157 -62 2268 115 0 7 chrX 160548067 160548371 -2051559 - AluSx SINE Alu -10 302 1 1322 237 136 13 chrX 160548384 160548861 -2051069 + L1ME3A LINE L1 5426 5961 -209 301 357 119 6 chrX 160548923 160549091 -2050839 + L1ME3A LINE L1 5969 6155 -15 911 66 74 0 chrX 160549122 160549244 -2050686 + AluSg SINE Alu 1 131 -179 2074 117 10 10 chrX 160549257 160549565 -2050365 + AluSx SINE Alu 2 309 -3 2315 88 0 14 chrX 160549653 160549950 -2049980 + AluSq SINE Alu 1 293 -20 341 269 60 88 chrX 160549961 160550155 -2049775 + L1MEd LINE L1 979 1177 -5133 1966 137 7 19 chrX 160550155 160550462 -2049468 - AluSx SINE Alu -9 303 1 341 269 60 88 chrX 160550462 160550596 -2049334 + L1MEd LINE L1 1177 1313 -4997 2457 75 3 3 chrX 160550596 160550901 -2049029 - AluSq SINE Alu -8 305 1 341 269 60 88 chrX 160550901 160551050 -2048880 + L1MEd LINE L1 1313 1505 -4805 * 867 141 50 82 chrX 160551040 160551145 -2048785 + HAL1 LINE L1 1441 1537 -970 2222 101 23 7 chrX 160551145 160551451 -2048479 + AluSx SINE Alu 1 311 -1 867 141 50 82 chrX 160551451 160551565 -2048365 + HAL1 LINE L1 1537 1653 -854 986 174 7 0 chrX 160551623 160551778 -2048152 + AluJb SINE Alu 137 292 -20 2192 111 7 3 chrX 160551797 160552094 -2047836 + AluSx SINE Alu 1 298 -14 213 250 0 0 chrX 160552173 160552221 -2047709 + A-rich Low_complexity Low_complexity 1 48 0 1779 134 25 50 chrX 160552222 160552542 -2047388 + AluJb SINE Alu 1 312 0 385 309 41 20 chrX 160552580 160552874 -2047056 + L1ME LINE L1 5262 5561 -601 2109 116 14 7 chrX 160552917 160553209 -2046721 - AluSp SINE Alu -19 294 1 1098 94 13 0 chrX 160553211 160553360 -2046570 - AluSg/x SINE Alu -16 296 146 2355 91 0 3 chrX 160553360 160553656 -2046274 + AluSx SINE Alu 2 296 -16 560 113 0 66 chrX 160555304 160555410 -2044520 + AluJb SINE Alu 85 183 -129 334 211 160 13 chrX 160555414 160555570 -2044360 - L1 LINE L1 -2374 3772 3594 1441 133 111 22 chrX 160555570 160555840 -2044090 + AluJo SINE Alu 1 294 -18 629 180 31 0 chrX 160555850 160555978 -2043952 + FLAM_C SINE Alu 2 133 0 404 185 92 58 chrX 160556011 160556084 -2043846 - L1 LINE L1 -2372 3774 3705 2524 61 7 3 chrX 160556084 160556394 -2043536 - AluY SINE Alu 0 311 1 404 185 92 58 chrX 160556394 160556493 -2043437 - L1 LINE L1 -2441 3705 3596 268 173 47 25 chrX 160556495 160556752 -2043178 + AluJo SINE Alu 1 295 -7 640 276 71 14 chrX 160556754 160557051 -2042879 - L1 LINE L1 -2542 3604 3291 1075 119 6 25 chrX 160557059 160557219 -2042711 - FRAM SINE Alu -19 157 1 321 194 54 31 chrX 160557235 160557268 -2042662 - L1 LINE L1 -2918 3228 3197 1789 143 65 0 chrX 160557268 160557547 -2042383 + AluJb SINE Alu 1 297 -15 321 194 54 31 chrX 160557547 160557642 -2042288 - L1 LINE L1 -2949 3197 3097 263 143 0 0 chrX 160557681 160557730 -2042200 - Alu SINE Alu 0 300 252 830 128 8 0 chrX 160557730 160557847 -2042083 - AluSq/x SINE Alu -195 118 1 425 246 0 8 chrX 160557859 160557977 -2041953 - L1 LINE L1 -3115 3031 2915 2486 93 3 0 chrX 160557980 160558292 -2041638 - AluSp SINE Alu 0 313 1 3052 116 56 12 chrX 160558303 160558821 -2041109 - L1PB2 LINE L1 0 6151 5611 2350 93 3 0 chrX 160558848 160559150 -2040780 - AluSg SINE Alu -7 303 1 1696 176 37 54 chrX 160559157 160559523 -2040407 - L1PB2 LINE L1 -1540 4606 4235 221 30 61 0 chrX 160559523 160559556 -2040374 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1973 113 29 11 chrX 160559558 160559833 -2040097 - AluSx SINE Alu -32 280 1 1696 176 37 54 chrX 160559833 160559923 -2040007 - L1PB2 LINE L1 -1912 4234 4155 455 234 17 40 chrX 160559892 160560067 -2039863 - L1 LINE L1 -3221 2925 2755 * 2326 103 0 3 chrX 160560071 160560372 -2039558 + AluSx SINE Alu 1 300 -12 1127 68 0 0 chrX 160560597 160560730 -2039200 - AluSp SINE Alu -180 133 1 1292 202 89 12 chrX 160561173 160561500 -2038430 - MLT1A1 LTR MaLR -12 353 2 813 220 48 104 chrX 160561500 160561845 -2038085 + MLT1C LTR MaLR 53 377 -90 1685 159 0 63 chrX 160562015 160562368 -2037562 - AluJb SINE Alu 0 334 1 952 147 7 0 chrX 160563289 160563432 -2036498 + FRAM SINE Alu 1 144 -32 2057 143 0 7 chrX 160564863 160565157 -2034773 + AluSx SINE Alu 1 292 -20 1775 152 23 23 chrX 160565462 160565771 -2034159 - AluJo SINE Alu -3 309 1 252 128 138 7 chrX 160565852 160566071 -2033859 + AluJo SINE Alu 1 297 -5 590 308 160 19 chrX 160566889 160567458 -2032472 - L2 LINE L2 -94 3219 2563 2304 100 3 0 chrX 160568583 160568873 -2031057 - AluSx SINE Alu -21 291 1 1879 91 106 7 chrX 160569013 160569287 -2030643 + AluSx SINE Alu 1 301 -11 362 279 0 33 chrX 160570503 160570625 -2029305 - Charlie2 DNA MER1_type -68 2794 2677 469 289 186 18 chrX 160570669 160571050 -2028880 + L2 LINE L2 2424 2868 -446 808 166 6 49 chrX 160571070 160571233 -2028697 + FRAM SINE Alu 1 156 -10 615 228 0 27 chrX 160571790 160571939 -2027991 - L1PB4 LINE L1 -13 6143 5999 1812 173 10 3 chrX 160572490 160572785 -2027145 + AluJo SINE Alu 1 297 -15 686 360 72 33 chrX 160572853 160573370 -2026560 + L1M4 LINE L1 3402 3938 -2208 2341 93 3 0 chrX 160573370 160573661 -2026269 - AluSx SINE Alu -20 292 1 2307 68 25 4 chrX 160574923 160575204 -2024726 - AluY SINE Alu -24 287 1 23 0 0 0 chrX 160575206 160575229 -2024701 + AT_rich Low_complexity Low_complexity 1 23 0 666 161 98 0 chrX 160575257 160575400 -2024530 + FRAM SINE Alu 5 161 -15 359 304 18 0 chrX 160575400 160575512 -2024418 + Charlie8 DNA MER1_type 100 213 -2204 2240 107 0 28 chrX 160575585 160575904 -2024026 - AluSx SINE Alu -2 310 1 509 290 191 23 chrX 160576139 160576777 -2023153 - L2 LINE L2 -253 3060 2305 919 161 0 0 chrX 160576896 160577039 -2022891 - FRAM SINE Alu -6 170 28 587 192 263 8 chrX 160577055 160577164 -2022766 - Charlie2 DNA MER1_type -83 2779 2699 711 159 0 83 chrX 160577164 160577251 -2022679 + AluJo/FLAM SINE Alu 1 73 -229 2638 39 0 26 chrX 160577251 160577562 -2022368 + AluY SINE Alu 1 303 -8 711 159 0 83 chrX 160577562 160577619 -2022311 + AluJo/FLAM SINE Alu 73 133 -169 587 192 263 8 chrX 160577619 160577863 -2022067 - Charlie2 DNA MER1_type -163 2699 2336 * 931 209 33 33 chrX 160577858 160578131 -2021799 - Charlie2 DNA MER1_type -646 2216 1944 429 325 70 19 chrX 160578138 160578294 -2021636 - Charlie2 DNA MER1_type -2532 330 183 2124 99 20 14 chrX 160578294 160578586 -2021344 + AluSx SINE Alu 3 296 -16 429 325 70 19 chrX 160578586 160578743 -2021187 - Charlie2 DNA MER1_type -2679 183 1 1476 118 24 0 chrX 160580872 160581084 -2018846 + AluSc SINE Alu 85 301 -8 2062 131 3 0 chrX 160581090 160581373 -2018557 + AluSx SINE Alu 9 292 -20 305 182 91 39 chrX 160582244 160582321 -2017609 - L1ME4a LINE L1 0 6121 6041 257 221 13 52 chrX 160582391 160582468 -2017462 - LTR33A LTR ERVL 0 523 450 2066 117 29 16 chrX 160582964 160583272 -2016658 - AluSx SINE Alu 0 312 1 461 301 76 13 chrX 160583322 160583558 -2016372 + L1ME2 LINE L1 5902 6152 -12 1480 169 3 21 chrX 160584564 160584848 -2015082 + AluJo SINE Alu 31 309 -3 328 383 93 0 chrX 160584926 160585088 -2014842 - MIR SINE MIR -78 184 8 310 244 157 9 chrX 160585169 160585284 -2014646 - L1ME4a LINE L1 -97 6024 5893 338 347 103 37 chrX 160585908 160586150 -2013780 + MIR SINE MIR 2 259 -3 2263 121 0 6 chrX 160587094 160587429 -2012501 + AluSx SINE Alu 1 333 0 704 302 138 13 chrX 160587611 160588074 -2011856 - MER68 LTR ERV1 -40 522 2 2083 119 0 3 chrX 160589425 160589718 -2010212 + AluSx SINE Alu 1 292 -20 827 140 0 44 chrX 160589834 160589970 -2009960 - FLAM_C SINE Alu -3 130 1 192 259 0 56 chrX 160590139 160590193 -2009737 + MIR SINE MIR 123 173 -89 285 278 49 21 chrX 160590344 160590359 -2009571 - L1M1 LINE L1 -461 5841 5827 505 189 38 136 chrX 160590359 160590624 -2009306 - L1MB7 LINE L1 -358 5826 5588 462 347 41 11 chrX 160592150 160592421 -2007509 - ERVL LTR ERVL -5123 641 363 246 284 12 0 chrX 160593070 160593151 -2006779 - L1MEd LINE L1 -5105 1014 933 257 246 18 0 chrX 160593617 160593674 -2006256 + MIR SINE MIR 126 183 -79 363 351 101 68 chrX 160593722 160594332 -2005598 - L1MEd LINE L1 -5312 807 170 618 167 117 8 chrX 160594332 160594452 -2005478 - FLAM_C SINE Alu 0 133 1 363 351 101 68 chrX 160594452 160594531 -2005399 - L1MEd LINE L1 -5949 170 95 2034 107 7 19 chrX 160594761 160595070 -2004860 + AluSg SINE Alu 1 305 -5 381 300 135 0 chrX 160595159 160595329 -2004601 + MER91A DNA MER1_type 4 196 0 2262 97 3 0 chrX 160595513 160595813 -2004117 - AluSp SINE Alu -12 301 1 1747 174 0 13 chrX 160595813 160596116 -2003814 - AluJo SINE Alu -12 300 1 213 241 35 0 chrX 160596185 160596243 -2003687 + L2 LINE L2 3169 3228 -85 2212 110 7 0 chrX 160596707 160597017 -2002913 + AluSx SINE Alu 1 312 0 1730 159 11 0 chrX 160597384 160597667 -2002263 + AluJo SINE Alu 9 294 -18 356 269 68 136 chrX 160597737 160597948 -2001982 + L1ME LINE L1 5400 5589 -532 1591 158 18 21 chrX 160597948 160598233 -2001697 + AluJo SINE Alu 11 294 -18 356 269 68 136 chrX 160598233 160598300 -2001630 + L1ME LINE L1 5589 5659 -462 1167 128 0 27 chrX 160598359 160598546 -2001384 + AluSp SINE Alu 120 301 -12 738 72 10 0 chrX 160598561 160598658 -2001272 + AluSq SINE Alu 1 98 -215 672 211 8 0 chrX 160598666 160598794 -2001136 + AluSp/q SINE Alu 184 312 -1 2412 76 0 0 chrX 160598841 160599142 -2000788 - AluSg SINE Alu -9 301 1 2295 86 3 7 chrX 160599256 160599559 -2000371 - AluSx SINE Alu -10 302 1 1476 149 22 56 chrX 160599652 160599975 -1999955 + AluJb SINE Alu 1 312 0 342 153 0 0 chrX 160600422 160600481 -1999449 + (CTGGGG)n Simple_repeat Simple_repeat 6 64 0 216 265 0 0 chrX 160601995 160602044 -1997886 + CT-rich Low_complexity Low_complexity 5 53 0 376 262 138 32 chrX 160602400 160602740 -1997190 - MLT1F LTR MaLR -81 461 86 2545 50 0 0 chrX 160606749 160607051 -1992879 - AluY SINE Alu -9 302 1 210 337 12 12 chrX 160609355 160609441 -1990489 - MIR SINE MIR -87 121 36 192 261 62 0 chrX 160615837 160615902 -1984028 - MIR3 SINE MIR -36 172 104 290 231 15 0 chrX 160616792 160616857 -1983073 - MIR SINE MIR -121 141 76 2326 96 0 0 chrX 160619617 160619929 -1980001 + AluSx SINE Alu 1 312 0 1356 226 43 77 chrX 160621695 160621987 -1977943 + L1MB7 LINE L1 5525 5826 -358 2082 112 7 7 chrX 160621987 160622282 -1977648 + AluSp SINE Alu 1 295 -18 2109 87 4 0 chrX 160622289 160622588 -1977342 + AluY SINE Alu 5 304 0 1356 226 43 77 chrX 160622588 160622778 -1977152 + L1MB7 LINE L1 5832 5999 -185 204 273 0 0 chrX 160624672 160624716 -1975214 + G-rich Low_complexity Low_complexity 4 47 0 24 53 0 0 chrX 160629483 160629521 -1970409 + GC_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chrX 160629681 160629704 -1970226 + GC_rich Low_complexity Low_complexity 1 23 0 259 285 0 73 chrX 160633410 160633561 -1966369 + SUBTEL_sa Satellite Satellite 7 146 -28 1799 179 7 0 chrX 160634147 160634443 -1965487 + AluJo SINE Alu 1 298 -14 2330 85 13 0 chrX 160634443 160634749 -1965181 + AluSg SINE Alu 1 310 0 2113 101 40 0 chrX 160634757 160635055 -1964875 + AluSg SINE Alu 1 310 0 2142 93 6 53 chrX 160636426 160636748 -1963182 + AluSx SINE Alu 1 307 -5 25 0 0 0 chrX 160637893 160637918 -1962012 + GC_rich Low_complexity Low_complexity 1 25 0 195 129 0 0 chrX 160640123 160640154 -1959776 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 2189 110 3 0 chrX 160640932 160641224 -1958706 - AluSx SINE Alu -19 293 1 1968 123 10 3 chrX 160641248 160641540 -1958390 - AluSc SINE Alu -15 294 1 376 262 138 32 chrX 160647087 160647427 -1952503 + MLT1F LTR MaLR 86 461 -81 216 265 0 0 chrX 160647783 160647832 -1952098 + GA-rich Low_complexity Low_complexity 5 53 0 342 153 0 0 chrX 160649346 160649405 -1950525 + (CCCCAG)n Simple_repeat Simple_repeat 6 64 0 1476 149 22 56 chrX 160649852 160650175 -1949755 - AluJb SINE Alu 0 312 1 2286 86 3 7 chrX 160650268 160650570 -1949360 + AluSx SINE Alu 1 301 -11 2369 77 3 0 chrX 160650684 160650984 -1948946 + AluSg SINE Alu 1 301 -9 672 211 8 0 chrX 160651031 160651159 -1948771 - AluSq SINE Alu -1 312 184 738 72 10 0 chrX 160651167 160651264 -1948666 - AluSq SINE Alu -215 98 1 1167 128 0 27 chrX 160651279 160651466 -1948464 - AluSp SINE Alu -12 301 120 362 270 68 133 chrX 160651525 160651591 -1948339 - L1ME LINE L1 -462 5659 5590 1615 156 17 21 chrX 160651591 160651879 -1948051 - AluJo SINE Alu -15 297 11 362 270 68 133 chrX 160651879 160652090 -1947840 - L1ME LINE L1 -531 5590 5400 1730 159 11 0 chrX 160652160 160652443 -1947487 - AluJo SINE Alu -18 294 9 2214 110 7 0 chrX 160652810 160653120 -1946810 - AluSx SINE Alu 0 312 1 213 241 35 0 chrX 160653583 160653641 -1946289 - L2 LINE L2 -85 3228 3169 1764 171 0 13 chrX 160653710 160654014 -1945916 + AluJo SINE Alu 1 300 -12 2315 88 7 0 chrX 160654014 160654321 -1945609 + AluSp SINE Alu 1 310 -3 413 276 147 0 chrX 160654502 160654658 -1945272 - MER91A DNA MER1_type 0 196 18 2101 100 0 26 chrX 160654761 160655072 -1944858 - AluSx SINE Alu -9 303 1 2133 102 14 0 chrX 160655082 160655377 -1944553 - AluSx SINE Alu -13 299 1 1422 149 76 29 chrX 160655386 160655525 -1944405 - AluJb SINE Alu -23 289 158 180 0 0 0 chrX 160655532 160655552 -1944378 + (TA)n Simple_repeat Simple_repeat 2 21 0 2381 74 0 10 chrX 160655552 160655856 -1944074 - AluSg SINE Alu -7 303 1 1422 149 76 29 chrX 160655856 160655992 -1943938 - AluJb SINE Alu -154 158 1 451 270 67 61 chrX 160656036 160656216 -1943714 + HERV16 LTR ERVL 1733 1921 -3111 961 233 51 21 chrX 160662608 160662961 -1936969 - L1MB7 LINE L1 -12 6161 5769 992 175 6 0 chrX 160662983 160663154 -1936776 - FRAM SINE Alu -4 172 1 489 108 0 0 chrX 160664556 160664621 -1935309 + Alu SINE Alu 228 292 -18 438 119 30 0 chrX 160664657 160664724 -1935206 + AluS SINE Alu 225 293 -16 736 108 0 95 chrX 160664724 160664811 -1935119 - L1MB3 LINE L1 -269 5914 5847 2391 48 10 0 chrX 160664811 160665105 -1934825 - AluY SINE Alu -14 297 1 736 108 0 95 chrX 160665105 160665175 -1934755 - L1MB3 LINE L1 -336 5847 5772 183 80 0 0 chrX 160665175 160665200 -1934730 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 2346 78 3 0 chrX 160665204 160665500 -1934430 - AluSp SINE Alu -12 301 5 878 129 0 23 chrX 160665509 160665641 -1934289 - FLAM_C SINE Alu 0 133 5 607 65 0 0 chrX 160665652 160665729 -1934201 - Alu SINE Alu -232 77 1 929 126 0 0 chrX 160665729 160665872 -1934058 - L1MB3 LINE L1 -514 5669 5527 713 149 0 166 chrX 160665881 160666056 -1933874 - FRAM SINE Alu -5 171 26 2380 80 3 3 chrX 160666061 160666373 -1933557 - AluSx SINE Alu 0 312 1 1321 81 0 0 chrX 160666422 160666594 -1933336 - AluSc SINE Alu -3 306 135 1018 165 18 64 chrX 160666602 160666768 -1933162 - AluJb SINE Alu -10 302 147 2318 93 0 0 chrX 160666768 160667068 -1932862 - AluSx SINE Alu -12 300 1 1018 165 18 64 chrX 160667068 160667119 -1932811 - AluJb SINE Alu -165 147 95 303 299 164 15 chrX 160667136 160667270 -1932660 - L1MB7 LINE L1 -393 5728 5575 208 306 0 10 chrX 160667517 160667615 -1932315 + CT-rich Low_complexity Low_complexity 1 97 0 349 293 143 14 chrX 160668515 160668662 -1931268 + L1MC4a LINE L1 7432 7597 -211 2098 80 6 55 chrX 160668795 160669120 -1930810 + AluSg SINE Alu 1 309 -1 1909 119 4 0 chrX 160669141 160669418 -1930512 + AluSx SINE Alu 35 312 0 2020 97 23 32 chrX 160669424 160669733 -1930197 + AluSx SINE Alu 2 307 -5 347 220 88 0 chrX 160669754 160669845 -1930085 + L1MB5 LINE L1 6010 6108 -66 443 79 0 0 chrX 160669996 160670059 -1929871 + Alu SINE Alu 1 63 -255 981 135 19 0 chrX 160670059 160670215 -1929715 + AluJb SINE Alu 140 298 -14 377 293 87 60 chrX 160671651 160671917 -1928013 - L2 LINE L2 -615 2699 2427 413 277 76 2 chrX 160672792 160672929 -1927001 - MIR SINE MIR -20 188 37 844 178 0 0 chrX 160673028 160673157 -1926773 + FLAM_C SINE Alu 2 130 -3 2505 47 3 0 chrX 160673244 160673541 -1926389 + AluY SINE Alu 1 298 -13 2325 89 7 0 chrX 160673543 160673846 -1926084 + AluSp SINE Alu 2 306 -7 628 165 0 91 chrX 160673856 160673931 -1925999 + FLAM_A SINE Alu 1 63 -248 1534 187 31 7 chrX 160673931 160674220 -1925710 - AluJo SINE Alu -16 296 1 628 165 0 91 chrX 160674220 160674265 -1925665 + FLAM_A SINE Alu 63 110 -201 799 144 0 12 chrX 160674269 160674429 -1925501 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 2182 112 10 0 chrX 160674434 160674739 -1925191 + AluSx SINE Alu 1 308 -4 1136 72 0 0 chrX 160674810 160674949 -1924981 + AluSq/x SINE Alu 2 140 -172 1910 71 32 115 chrX 160674950 160675288 -1924642 + AluYb8 SINE Alu 1 310 -8 618 319 178 30 chrX 160675289 160675686 -1924244 - L2 LINE L2 -619 2695 2358 2473 63 0 0 chrX 160675686 160675988 -1923942 + AluY SINE Alu 1 302 -9 618 319 178 30 chrX 160675988 160676198 -1923732 - L2 LINE L2 -956 2358 1998 23 0 0 0 chrX 160676915 160676938 -1922992 + AT_rich Low_complexity Low_complexity 1 23 0 377 357 35 23 chrX 160677194 160677365 -1922565 - HAL1b LINE L1 -418 930 758 199 302 194 7 chrX 160680675 160680814 -1919116 - MIR SINE MIR -32 230 66 2039 104 7 17 chrX 160681241 160681376 -1918554 + AluSx SINE Alu 1 136 -182 2292 80 3 3 chrX 160681376 160681677 -1918253 + AluSp SINE Alu 1 301 -12 2386 58 0 19 chrX 160681677 160681986 -1917944 + AluY SINE Alu 1 303 -8 2039 104 7 17 chrX 160681986 160682170 -1917760 + AluSx SINE Alu 134 318 0 2197 66 19 53 chrX 160682172 160682491 -1917439 + AluY SINE Alu 3 310 -1 1390 167 24 36 chrX 160682492 160682821 -1917109 + L1MB3 LINE L1 5814 6138 -45 2163 102 0 13 chrX 160682821 160683126 -1916804 + AluSq SINE Alu 1 301 -12 1492 220 24 19 chrX 160683169 160683547 -1916383 - MLT1C LTR MaLR -1 466 87 714 219 102 50 chrX 160683570 160683657 -1916273 + L1ME3A LINE L1 5606 5687 -483 2301 88 13 0 chrX 160683657 160683964 -1915966 + AluY SINE Alu 1 311 0 714 219 102 50 chrX 160683964 160684159 -1915771 + L1ME3A LINE L1 5687 5903 -267 2158 104 27 0 chrX 160684181 160684479 -1915451 + AluSq SINE Alu 1 306 -7 363 310 107 43 chrX 160684613 160684761 -1915169 + L1ME3A LINE L1 5963 6127 -43 2339 68 3 19 chrX 160684761 160685071 -1914859 - AluSx SINE Alu -7 305 1 363 310 107 43 chrX 160685071 160685109 -1914821 + L1ME3A LINE L1 6127 6161 -9 2516 50 0 0 chrX 160685113 160685411 -1914519 - AluY SINE Alu -13 298 1 2339 83 7 0 chrX 160685412 160685713 -1914217 - AluSq SINE Alu -10 303 1 180 237 0 79 chrX 160685924 160686000 -1913930 + L2 LINE L2 3182 3251 -21 2312 76 0 3 chrX 160686477 160686778 -1913152 - AluSc SINE Alu -9 300 1 238 283 28 41 chrX 160686793 160686938 -1912992 + L2 LINE L2 2025 2167 -1147 919 114 8 0 chrX 160687038 160687169 -1912761 + FLAM_A SINE Alu 1 132 -1 207 69 0 0 chrX 160687191 160687220 -1912710 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 240 35 0 0 chrX 160687620 160687649 -1912281 + (CGG)n Simple_repeat Simple_repeat 2 30 0 482 221 106 80 chrX 160688198 160688397 -1911533 - MIR SINE MIR -7 255 52 233 310 82 76 chrX 160688818 160688936 -1910994 + MIR SINE MIR 56 177 -85 2226 63 3 51 chrX 160688936 160689251 -1910679 - AluSg SINE Alu -10 300 1 233 310 82 76 chrX 160689251 160689290 -1910640 + MIR SINE MIR 177 214 -48 1196 275 120 9 chrX 160689321 160689869 -1910061 - L2 LINE L2 0 3313 2714 183 130 22 43 chrX 160692873 160692919 -1907011 - L2 LINE L2 -213 3059 3015 206 254 239 7 chrX 160693758 160693868 -1906062 + MIR SINE MIR 43 183 -79 33 56 0 0 chrX 160695583 160695637 -1904293 + GC_rich Low_complexity Low_complexity 1 54 0 284 48 24 0 chrX 160695683 160695725 -1904205 + (CGGGG)n Simple_repeat Simple_repeat 4 46 0 38 0 0 0 chrX 160695764 160695802 -1904128 + GC_rich Low_complexity Low_complexity 1 38 0 231 125 0 0 chrX 160695999 160696039 -1903891 + (CGG)n Simple_repeat Simple_repeat 3 42 0 2230 91 0 3 chrX 160698227 160698525 -1901405 + AluSg SINE Alu 1 297 -13 464 280 0 63 chrX 160698564 160698706 -1901224 - MIR3 SINE MIR -10 198 63 21 0 0 0 chrX 160702868 160702889 -1897041 + GC_rich Low_complexity Low_complexity 1 21 0 521 98 0 12 chrX 160702984 160703066 -1896864 + (CCG)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chrX 160703276 160703297 -1896633 + GC_rich Low_complexity Low_complexity 1 21 0 183 184 0 0 chrX 160705321 160705359 -1894571 + GA-rich Low_complexity Low_complexity 1 38 0 323 203 14 0 chrX 160705571 160705640 -1894290 + MER3 DNA MER1_type 18 87 -122 355 257 40 0 chrX 160706296 160706397 -1893533 - Charlie5 DNA MER1_type -36 2576 2472 1201 148 74 0 chrX 160706458 160706675 -1893255 - AluJo SINE Alu -4 308 76 1870 154 6 3 chrX 160706888 160707199 -1892731 - AluJb SINE Alu 0 312 1 690 245 83 0 chrX 160709500 160709716 -1890214 - L1MB5 LINE L1 -17 6157 5924 388 176 33 0 chrX 160710384 160710475 -1889455 + CT-rich Low_complexity Low_complexity 3 96 0 1779 121 0 115 chrX 160710478 160710816 -1889114 - AluJb SINE Alu -2 300 2 357 280 60 0 chrX 160710979 160711079 -1888851 - L2 LINE L2 -267 3046 2941 2405 90 0 0 chrX 160711100 160711411 -1888519 + AluSq SINE Alu 1 311 -2 258 275 36 72 chrX 160711621 160711759 -1888171 - L1MC4a LINE L1 -1877 5931 5799 317 335 43 27 chrX 160711764 160711949 -1887981 - L1MC4a LINE L1 -2216 5592 5405 2022 176 68 40 chrX 160711950 160712466 -1887464 - L1MB5 LINE L1 0 6174 5652 325 267 44 44 chrX 160712466 160712556 -1887374 - L1MC4a LINE L1 -2423 5385 5296 676 120 0 0 chrX 160712559 160712659 -1887271 - FLAM_C SINE Alu -1 142 43 2265 100 0 0 chrX 160712686 160712986 -1886944 + AluSx SINE Alu 1 300 -12 1490 270 108 12 chrX 160713145 160713722 -1886208 - L2 LINE L2 -510 2804 2173 912 127 8 0 chrX 160713783 160713917 -1886013 + AluJo SINE Alu 1 135 -177 1915 145 0 0 chrX 160713917 160714207 -1885723 + AluJb SINE Alu 1 290 -22 619 171 57 29 chrX 160714212 160714235 -1885695 + L1M4 LINE L1 4299 4320 -1826 1996 130 0 10 chrX 160714235 160714527 -1885403 - AluSq SINE Alu -24 289 1 619 171 57 29 chrX 160714527 160714713 -1885217 + L1M4 LINE L1 4320 4514 -1632 1371 173 3 51 chrX 160714714 160714876 -1885054 - MLT2C1 LTR ERVL 0 397 254 2245 109 0 0 chrX 160714876 160715178 -1884752 - AluSq SINE Alu -11 302 1 1371 173 3 51 chrX 160715178 160715310 -1884620 - MLT2C1 LTR ERVL -143 254 117 2044 121 0 20 chrX 160715348 160715451 -1884479 - AluSx SINE Alu -19 293 189 2504 56 0 3 chrX 160715451 160715757 -1884173 + AluY SINE Alu 1 305 -6 2044 121 0 20 chrX 160715757 160715951 -1883979 - AluSx SINE Alu -123 189 2 1505 158 0 24 chrX 160715953 160716207 -1883723 + AluJo SINE Alu 28 275 -37 622 115 0 0 chrX 160716263 160716367 -1883563 + L1M LINE L1 5318 5421 -757 1099 157 5 5 chrX 160716367 160716558 -1883372 + AluJb SINE Alu 121 311 -1 37 76 0 0 chrX 160716812 160716891 -1883039 + GC_rich Low_complexity Low_complexity 1 79 0 24 77 0 0 chrX 160717010 160717062 -1882868 + GC_rich Low_complexity Low_complexity 1 52 0 212 255 21 11 chrX 160717116 160717210 -1882720 + G-rich Low_complexity Low_complexity 4 98 0 434 232 62 11 chrX 160721847 160721976 -1877954 - L1MB7 LINE L1 -9 6175 6043 374 297 161 47 chrX 160730738 160731286 -1868644 - L2 LINE L2 -1006 2308 1699 822 269 84 16 chrX 160732596 160732845 -1867085 + L2 LINE L2 2489 2754 -560 1606 181 7 0 chrX 160732975 160733276 -1866654 - AluJo SINE Alu 0 303 1 2442 80 0 0 chrX 160733294 160733605 -1866325 - AluY SINE Alu 0 311 1 1570 156 52 39 chrX 160733605 160733912 -1866018 - AluJo SINE Alu -1 311 1 2440 70 3 0 chrX 160733925 160734226 -1865704 - AluSp SINE Alu -11 302 1 310 226 316 0 chrX 160734420 160734575 -1865355 + HAL1 LINE L1 1715 1918 -589 1548 151 99 0 chrX 160734712 160734996 -1864934 + AluJo SINE Alu 1 312 0 2355 76 3 3 chrX 160735000 160735301 -1864629 + AluSp SINE Alu 1 301 -12 1285 274 78 42 chrX 160735487 160736114 -1863816 + L1MEc LINE L1 56 705 -5691 460 336 84 28 chrX 160736283 160736497 -1863433 + L1ME4a LINE L1 5849 6074 -47 856 149 0 0 chrX 160738568 160738702 -1861228 + AluJo SINE Alu 1 134 -178 1742 172 3 0 chrX 160738716 160739013 -1860917 + AluJb SINE Alu 1 298 -14 409 312 91 0 chrX 160739033 160739187 -1860743 + L1ME4a LINE L1 5954 6121 0 2130 108 7 7 chrX 160739207 160739514 -1860416 + AluSx SINE Alu 3 309 -3 496 267 87 19 chrX 160739616 160739822 -1860108 + L2 LINE L2 2502 2721 -593 2329 96 0 0 chrX 160739823 160740126 -1859804 + AluSq SINE Alu 1 303 -10 871 212 6 0 chrX 160740126 160740296 -1859634 + AluJo/FRAM SINE Alu 134 304 -8 605 241 41 109 chrX 160740312 160740451 -1859479 + L1MC4 LINE L1 7082 7229 -813 2135 121 0 10 chrX 160740451 160740749 -1859181 + AluSg SINE Alu 1 295 -15 605 241 41 109 chrX 160740749 160740949 -1858981 + L1MC4 LINE L1 7229 7398 -644 196 212 212 12 chrX 160741189 160741274 -1858656 + L2 LINE L2 3150 3251 -21 510 241 86 17 chrX 160741327 160741559 -1858371 - L2 LINE L2 -1040 2274 2027 243 236 214 39 chrX 160742642 160742820 -1857110 + MLT1K LTR MaLR 332 540 -48 190 250 26 53 chrX 160743478 160743554 -1856376 + MIR SINE MIR 18 91 -117 23 33 0 0 chrX 160745321 160745351 -1854579 + GC_rich Low_complexity Low_complexity 1 30 0 35 54 0 0 chrX 160745451 160745507 -1854423 + GC_rich Low_complexity Low_complexity 1 56 0 236 159 0 43 chrX 160745524 160745593 -1854337 + C-rich Low_complexity Low_complexity 3 68 0 22 0 0 0 chrX 160749305 160749327 -1850603 + GC_rich Low_complexity Low_complexity 1 22 0 2016 97 0 53 chrX 160749942 160750263 -1849667 - AluSg SINE Alu -5 305 2 2184 109 3 6 chrX 160750645 160750958 -1848972 - AluSx SINE Alu 0 312 1 28 61 0 0 chrX 160750958 160751007 -1848923 + AT_rich Low_complexity Low_complexity 1 49 0 1061 142 6 0 chrX 160751008 160751170 -1848760 - FRAM SINE Alu -14 162 1 2171 77 0 13 chrX 160751184 160751482 -1848448 + AluY SINE Alu 1 294 -17 1977 110 0 7 chrX 160752232 160752550 -1847380 + AluJb SINE Alu 5 320 0 2406 98 0 0 chrX 160752770 160753077 -1846853 - AluSx SINE Alu -5 307 1 802 161 0 0 chrX 160753103 160753227 -1846703 + FLAM_C SINE Alu 1 124 -19 21 0 0 0 chrX 160753230 160753251 -1846679 + AT_rich Low_complexity Low_complexity 1 21 0 459 287 102 6 chrX 160753314 160753471 -1846459 + MLT1K LTR MaLR 5 176 -412 1547 141 32 136 chrX 160753558 160753684 -1846246 - MER65A LTR ERV1 0 445 307 1698 181 0 13 chrX 160753684 160753982 -1845948 - AluJb SINE Alu -10 302 9 1547 141 32 136 chrX 160753982 160753998 -1845932 - MER65A LTR ERV1 -138 307 291 2202 84 3 0 chrX 160753998 160754330 -1845600 - AluSq SINE Alu 0 333 1 1547 141 32 136 chrX 160754330 160754625 -1845305 - MER65A LTR ERV1 -154 291 52 1833 175 10 3 chrX 160754631 160754945 -1844985 - 7SLRNA srpRNA srpRNA -4 316 1 815 146 7 15 chrX 160754945 160755082 -1844848 - AluJo SINE Alu -176 136 1 1289 193 37 0 chrX 160755083 160755301 -1844629 - 7SLRNA srpRNA srpRNA -94 226 1 2214 121 0 0 chrX 160755305 160755610 -1844320 - AluSx SINE Alu -4 308 4 288 111 0 0 chrX 160755614 160755659 -1844271 - MER65A LTR ERV1 -400 45 1 4031 116 69 10 chrX 160755659 160756427 -1843503 - MER65A-int LTR ERV1 0 4871 3914 2085 90 7 23 chrX 160756427 160756727 -1843203 - AluSx SINE Alu -17 295 1 4031 116 69 10 chrX 160756727 160757049 -1842881 - MER65A-int LTR ERV1 -957 3914 3612 976 53 0 112 chrX 160757049 160757201 -1842729 + AluY SINE Alu 38 172 -139 921 153 0 7 chrX 160757204 160757348 -1842582 - AluSc SINE Alu -22 287 145 1166 136 9 42 chrX 160757350 160757563 -1842367 - AluJo SINE Alu -25 287 82 1132 58 0 0 chrX 160757609 160757746 -1842184 - AluSg SINE Alu -173 137 1 541 174 11 11 chrX 160757746 160757838 -1842092 - AluJo SINE Alu -216 96 5 3362 157 71 42 chrX 160757889 160758725 -1841205 - MER65-int LTR ERV1 -3029 1842 983 1161 183 9 13 chrX 160758756 160758980 -1840950 - AluJb SINE Alu -4 308 86 1971 139 33 0 chrX 160759022 160759324 -1840606 + AluJb SINE Alu 1 312 0 1745 106 127 4 chrX 160759324 160759599 -1840331 + AluSc SINE Alu 1 309 0 26 0 0 0 chrX 160759681 160759707 -1840223 + AT_rich Low_complexity Low_complexity 1 26 0 841 157 0 15 chrX 160759707 160759841 -1840089 - FLAM_C SINE Alu -1 132 1 321 135 0 0 chrX 160759882 160759934 -1839996 + (T)n Simple_repeat Simple_repeat 1 52 0 1348 133 9 27 chrX 160759941 160760166 -1839764 - AluJo SINE Alu -91 221 1 1400 108 221 85 chrX 160760192 160760447 -1839483 - MER65A LTR ERV1 0 445 226 2235 113 0 0 chrX 160760447 160760749 -1839181 + AluSx SINE Alu 1 302 -10 2215 88 11 0 chrX 160760752 160761037 -1838893 + AluSq SINE Alu 1 288 -25 1400 108 221 85 chrX 160761037 160761167 -1838763 - MER65A LTR ERV1 -220 225 3 275 259 168 60 chrX 160761190 160761375 -1838555 + MLT1K LTR MaLR 378 582 -6 195 300 0 33 chrX 160761566 160761626 -1838304 + L2 LINE L2 3213 3270 -2 208 310 26 69 chrX 160761774 160761890 -1838040 + MIR SINE MIR 72 182 -80 438 243 0 27 chrX 160762030 160762141 -1837789 + MER2 DNA MER2_type 1 108 -237 2220 70 0 58 chrX 160762155 160762468 -1837462 - AluY SINE Alu -16 295 1 2170 105 10 0 chrX 160762469 160762764 -1837166 - AluSx SINE Alu -14 298 1 1019 157 6 6 chrX 160762767 160762933 -1836997 - AluJb SINE Alu -9 303 138 385 209 0 0 chrX 160762933 160763019 -1836911 + MER2 DNA MER2_type 123 208 -137 1589 155 32 4 chrX 160763026 160763304 -1836626 - AluJo SINE Alu -21 291 6 1290 102 0 0 chrX 160763317 160763484 -1836446 - AluSq SINE Alu -13 300 134 2442 44 0 7 chrX 160763484 160763780 -1836150 - AluY SINE Alu -17 294 1 342 250 0 25 chrX 160763823 160763903 -1836027 + MER2 DNA MER2_type 268 345 0 295 174 70 23 chrX 160763965 160764051 -1835879 + L1MC1 LINE L1 6048 6137 -196 445 200 47 0 chrX 160764096 160764181 -1835749 + L1MC1 LINE L1 6245 6333 0 1583 229 121 9 chrX 160767841 160768261 -1831669 + MLT1C LTR MaLR 1 467 0 1403 144 39 18 chrX 160768261 160768348 -1831582 + MLT1C-int LTR MaLR 1 85 -1286 1683 169 136 17 chrX 160768348 160768702 -1831228 - MSTD LTR MaLR 0 396 1 1403 144 39 18 chrX 160768702 160768899 -1831031 + MLT1C-int LTR MaLR 85 291 -1080 1682 134 90 17 chrX 160768899 160769189 -1830741 + AluJo SINE Alu 1 311 -1 1008 182 0 6 chrX 160769190 160769366 -1830564 + AluJo/FRAM SINE Alu 133 307 -5 3637 206 56 20 chrX 160769367 160769463 -1830467 + MLT1C-int LTR MaLR 282 373 -998 2161 106 7 0 chrX 160769463 160769756 -1830174 + AluSx SINE Alu 3 297 -15 3637 206 56 20 chrX 160769756 160770500 -1829430 + MLT1C-int LTR MaLR 373 1152 -219 1847 124 19 42 chrX 160770919 160771062 -1828868 + AluJb SINE Alu 1 146 -166 297 0 0 0 chrX 160771062 160771095 -1828835 + (GAA)n Simple_repeat Simple_repeat 2 34 0 1847 124 19 42 chrX 160771095 160771258 -1828672 + AluJb SINE Alu 146 300 -12 928 322 91 51 chrX 160772035 160772151 -1827779 + L2 LINE L2 1427 1537 -1777 2010 108 4 0 chrX 160772151 160772470 -1827460 + AluSg SINE Alu 1 320 0 928 322 91 51 chrX 160772470 160773040 -1826890 + L2 LINE L2 1537 2083 -1231 2297 69 0 44 chrX 160773040 160773212 -1826718 - AluSx SINE Alu -8 304 151 2375 58 0 3 chrX 160773212 160773505 -1826425 - AluY SINE Alu -19 292 1 2297 69 0 44 chrX 160773505 160773650 -1826280 - AluSx SINE Alu -161 151 1 1788 67 118 26 chrX 160773651 160773921 -1826009 - AluSx SINE Alu -17 295 1 928 322 91 51 chrX 160773921 160774177 -1825753 + L2 LINE L2 2082 2411 -903 241 327 0 12 chrX 160774334 160774438 -1825492 - MIR SINE MIR -62 146 63 22 0 0 0 chrX 160775056 160775078 -1824852 + GC_rich Low_complexity Low_complexity 1 22 0 550 193 8 0 chrX 160777355 160777474 -1822456 - L1MB4 LINE L1 0 6180 6061 2074 128 3 0 chrX 160777491 160777788 -1822142 - AluSg SINE Alu -12 298 1 2174 113 3 6 chrX 160777868 160778179 -1821751 - AluSx SINE Alu 0 312 3 722 176 0 16 chrX 160778524 160778633 -1821297 + FLAM_C SINE Alu 5 113 -199 252 0 0 0 chrX 160778633 160778661 -1821269 + (TA)n Simple_repeat Simple_repeat 2 29 0 722 176 0 16 chrX 160778661 160778676 -1821254 + FLAM_C SINE Alu 113 127 -185 2164 116 0 3 chrX 160778796 160779097 -1820833 - AluSx SINE Alu -12 300 1 2024 136 0 0 chrX 160779180 160779474 -1820456 + AluJo SINE Alu 1 294 -18 2222 89 0 0 chrX 160779478 160779796 -1820134 + AluSx SINE Alu 1 318 0 411 59 0 0 chrX 160779796 160779847 -1820083 + AluSq SINE Alu 1 51 -261 3758 191 28 78 chrX 160779847 160780867 -1819063 + LTR5 LTR ERVK 1 969 0 1686 97 7 75 chrX 160780871 160781149 -1818781 + AluSq SINE Alu 43 301 -12 2210 83 159 2 chrX 160781411 160781807 -1818123 + MER75 DNA T2_type 12 469 -45 1756 79 0 9 chrX 160781807 160782036 -1817894 - AluSq SINE Alu -86 227 1 2285 87 3 0 chrX 160782206 160782505 -1817425 - AluSq SINE Alu -13 300 1 308 237 0 0 chrX 160782619 160782695 -1817235 - L1MEd LINE L1 -3208 2921 2846 1923 148 7 7 chrX 160782762 160783067 -1816863 + AluSx SINE Alu 5 309 -3 414 143 0 82 chrX 160783069 160783167 -1816763 - MER2 DNA MER2_type -136 209 120 637 144 0 27 chrX 160783179 160783290 -1816640 + FLAM_C SINE Alu 34 141 -2 2121 102 20 0 chrX 160783302 160783596 -1816334 + AluSg SINE Alu 1 300 -10 750 98 65 0 chrX 160783596 160783719 -1816211 - MER2 DNA MER2_type -213 132 2 331 224 0 0 chrX 160783731 160783798 -1816132 - MER58A DNA MER1_type 0 115 49 2109 103 10 0 chrX 160783976 160784268 -1815662 - AluSx SINE Alu -17 295 1 607 333 189 40 chrX 160784294 160784549 -1815381 - L1MEd LINE L1 -4936 1183 967 1834 155 3 7 chrX 160784549 160784845 -1815085 - AluJb SINE Alu -17 295 1 607 333 189 40 chrX 160784845 160785181 -1814749 - L1MEd LINE L1 -5152 967 504 297 51 0 0 chrX 160785429 160785468 -1814462 + (TG)n Simple_repeat Simple_repeat 2 40 0 192 40 0 0 chrX 160785467 160785492 -1814438 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1256 164 164 0 chrX 160785492 160785736 -1814194 - AluJb SINE Alu -28 284 1 2193 104 0 25 chrX 160786570 160786887 -1813043 + AluSc SINE Alu 1 309 0 2034 120 27 0 chrX 160786910 160787211 -1812719 + AluSg SINE Alu 1 309 -1 2235 109 3 0 chrX 160787226 160787537 -1812393 + AluSx SINE Alu 1 312 0 252 0 0 0 chrX 160787698 160787726 -1812204 + (A)n Simple_repeat Simple_repeat 1 28 0 1427 144 0 14 chrX 160788139 160788361 -1811569 - AluSq SINE Alu -94 219 1 226 125 31 94 chrX 160789069 160789133 -1810797 + MLT1C LTR MaLR 67 126 -341 243 219 68 0 chrX 160789259 160789332 -1810598 + MLT1C LTR MaLR 361 438 -29 352 293 66 36 chrX 160791630 160791797 -1808133 - MIR3 SINE MIR -32 176 5 264 286 84 31 chrX 160794819 160794897 -1805033 + L1M4 LINE L1 3011 3083 -3063 2154 128 16 0 chrX 160794897 160795202 -1804728 + AluSq SINE Alu 1 310 -3 264 286 84 31 chrX 160795202 160795350 -1804580 + L1M4 LINE L1 3083 3249 -2897 2237 101 0 3 chrX 160795368 160795674 -1804256 + AluY SINE Alu 1 305 -6 2166 95 10 0 chrX 160795680 160795974 -1803956 + AluSp SINE Alu 1 297 -16 417 293 31 117 chrX 160796008 160796262 -1803668 + L1M4 LINE L1 3498 3677 -2469 349 165 200 43 chrX 160796262 160796335 -1803595 + AluJo/FLAM SINE Alu 1 61 -241 2034 119 3 3 chrX 160796335 160796628 -1803302 - AluJb SINE Alu -8 304 12 349 165 200 43 chrX 160796628 160796669 -1803261 + AluJo/FLAM SINE Alu 61 133 -169 417 293 31 117 chrX 160796669 160796985 -1802945 + L1M4 LINE L1 3677 4019 -2127 1952 125 22 26 chrX 160796990 160797303 -1802627 + AluSx SINE Alu 1 312 0 687 221 101 14 chrX 160797464 160797672 -1802258 + L1ME2 LINE L1 5589 5814 -350 389 258 129 23 chrX 160797698 160797830 -1802100 + L1ME2 LINE L1 5942 6087 -79 406 278 10 56 chrX 160797906 160798070 -1801860 + L1ME3A LINE L1 5982 6137 -33 2198 98 0 0 chrX 160798070 160798365 -1801565 - AluSg SINE Alu -15 295 1 406 278 10 56 chrX 160798365 160798398 -1801532 + L1ME3A LINE L1 6137 6170 0 2071 112 17 0 chrX 160798406 160798533 -1801397 + AluSx SINE Alu 3 126 -186 2219 103 3 3 chrX 160798533 160798833 -1801097 + AluSc SINE Alu 1 300 -9 2071 112 17 0 chrX 160798833 160799001 -1800929 + AluSx SINE Alu 126 303 -9 195 129 0 0 chrX 160799792 160799823 -1800107 + (AGCTG)n Simple_repeat Simple_repeat 1 31 0 185 298 0 0 chrX 160800031 160800088 -1799842 - MIR SINE MIR -84 124 68 260 303 0 0 chrX 160800580 160800656 -1799274 - MIR3 SINE MIR -29 179 104 208 301 24 12 chrX 160801015 160801098 -1798832 + L2 LINE L2 2875 2958 -356 203 338 15 0 chrX 160801747 160801815 -1798115 - MIR SINE MIR -64 144 76 2092 112 0 32 chrX 160802031 160802205 -1797725 - AluSx SINE Alu -9 303 125 2200 90 20 0 chrX 160802205 160802505 -1797425 - AluY SINE Alu -5 306 1 180 0 0 0 chrX 160802506 160802526 -1797404 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2233 79 0 0 chrX 160802526 160802804 -1797126 - AluSc SINE Alu -31 278 1 2092 112 0 32 chrX 160802804 160802939 -1796991 - AluSx SINE Alu -185 127 1 183 256 0 0 chrX 160803281 160803320 -1796610 - MIR SINE MIR -108 100 62 2369 79 0 3 chrX 160803897 160804201 -1795729 + AluSx SINE Alu 1 303 -9 208 307 11 37 chrX 160804859 160804973 -1794957 + MIR SINE MIR 10 124 -84 21 0 0 0 chrX 160805108 160805129 -1794801 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 160805220 160805243 -1794687 + GC_rich Low_complexity Low_complexity 1 23 0 1055 282 35 0 chrX 160806526 160806838 -1793092 - L2 LINE L2 -398 2916 2594 387 222 62 117 chrX 160806847 160806902 -1793028 - L1MC5 LINE L1 -37 7924 7867 2194 107 0 7 chrX 160806902 160807210 -1792720 - AluSx SINE Alu -6 306 1 387 222 62 117 chrX 160807210 160807316 -1792614 - L1MC5 LINE L1 -94 7867 7772 2250 90 30 0 chrX 160807325 160807625 -1792305 - AluSc SINE Alu 0 309 1 1888 151 0 27 chrX 160807625 160807924 -1792006 - AluSx SINE Alu -21 291 1 1005 203 108 12 chrX 160807934 160808386 -1791544 - L1MB8 LINE L1 -1 6177 5634 323 235 110 22 chrX 160808392 160808528 -1791402 - L1MC5 LINE L1 -182 7779 7632 1110 256 180 7 chrX 160808536 160808579 -1791351 - L2 LINE L2 -774 2540 2506 375 23 0 0 chrX 160808579 160808623 -1791307 + (TG)n Simple_repeat Simple_repeat 1 44 0 1110 256 180 7 chrX 160808623 160809024 -1790906 - L2 LINE L2 -808 2506 2019 1819 105 0 26 chrX 160809024 160809152 -1790778 - AluSg SINE Alu -51 259 140 2241 82 0 7 chrX 160809152 160809455 -1790475 - AluY SINE Alu -9 302 2 1819 105 0 26 chrX 160809455 160809592 -1790338 - AluSg SINE Alu -170 140 1 711 292 89 16 chrX 160809592 160809972 -1789958 - MLT1C LTR MaLR -59 408 1 543 303 67 38 chrX 160810648 160810915 -1789015 - LTR16A LTR ERVL -19 431 157 845 216 121 20 chrX 160811951 160812150 -1787780 - MER20 DNA MER1_type 0 219 1 555 226 204 17 chrX 160812575 160812810 -1787120 + L1MB7 LINE L1 5905 6183 -1 2138 82 20 10 chrX 160812821 160813114 -1786816 + AluSx SINE Alu 1 296 -16 241 344 42 10 chrX 160813449 160813545 -1786385 - MIR SINE MIR -70 192 94 849 152 23 0 chrX 160813769 160813901 -1786029 + AluJo SINE Alu 1 135 -177 2281 97 0 0 chrX 160813926 160814224 -1785706 - AluSx SINE Alu -14 298 1 1475 253 38 2 chrX 160814790 160815213 -1784717 - MER77 LTR ERV1 -7 598 161 460 249 18 30 chrX 160815463 160815632 -1784298 - MLT1C LTR MaLR 0 467 301 2006 258 87 11 chrX 160815749 160816361 -1783569 - MER67B LTR ERV1 -3 658 1 763 229 113 0 chrX 160817455 160817721 -1782209 - MER68 LTR ERV1 -264 298 3 300 367 35 0 chrX 160818332 160818501 -1781429 + L2 LINE L2 1865 2039 -1275 203 347 16 32 chrX 160818503 160818627 -1781303 + L2 LINE L2 2310 2431 -883 249 88 0 0 chrX 160818946 160818980 -1780950 - U2 snRNA snRNA -152 36 3 670 130 0 10 chrX 160819228 160819328 -1780602 + AluJ/FLAM SINE Alu 1 99 -213 427 290 7 0 chrX 160819365 160819503 -1780427 - L1MC4 LINE L1 -370 7672 7534 1622 170 47 0 chrX 160819512 160819789 -1780141 - AluJb SINE Alu -22 290 1 299 311 93 33 chrX 160820497 160820648 -1779282 + L3 LINE CR1 1041 1200 -377 219 342 26 0 chrX 160820867 160820943 -1778987 + L3 LINE CR1 1485 1562 -15 2274 101 0 13 chrX 160821356 160821673 -1778257 - AluSq SINE Alu 0 313 1 215 275 0 38 chrX 160822612 160822692 -1777238 + C-rich Low_complexity Low_complexity 3 79 0 495 292 92 5 chrX 160823252 160823437 -1776493 - L1MC/D LINE L1 -1989 5819 5619 274 244 11 11 chrX 160823578 160823668 -1776262 - L1MC/D LINE L1 -2388 5420 5331 270 81 0 0 chrX 160823693 160823730 -1776200 + (TG)n Simple_repeat Simple_repeat 2 38 0 2317 87 0 0 chrX 160823731 160824031 -1775899 - AluSq SINE Alu -13 300 1 1024 81 0 7 chrX 160824031 160824167 -1775763 - AluSq/x SINE Alu -177 135 1 301 341 54 23 chrX 160824170 160824299 -1775631 - L1MC/D LINE L1 -804 5342 5210 962 171 24 0 chrX 160824314 160824478 -1775452 - FRAM SINE Alu -11 165 1 437 238 48 8 chrX 160825227 160825353 -1774577 - MLT1C LTR MaLR 0 467 337 755 73 73 7 chrX 160825353 160825503 -1774427 + CT-rich Low_complexity Low_complexity 4 163 0 952 190 6 0 chrX 160825505 160825679 -1774251 - AluSg/x SINE Alu -1 309 135 646 208 145 48 chrX 160825679 160825948 -1773982 - MLT1C LTR MaLR -115 352 58 207 292 72 6 chrX 160826022 160826117 -1773813 + MER5A DNA MER1_type 25 123 -55 416 247 19 31 chrX 160827170 160827332 -1772598 - MLT1C LTR MaLR -7 460 301 1990 258 87 11 chrX 160827449 160828058 -1771872 - MER67B LTR ERV1 -3 658 4 293 285 253 5 chrX 160828087 160828273 -1771657 + L2 LINE L2 2036 2267 -1047 257 364 88 45 chrX 160828415 160828769 -1771161 + L2 LINE L2 2593 2961 -353 1923 107 0 140 chrX 160828975 160829367 -1770563 - MER1B DNA MER1_type 0 337 1 786 135 0 43 chrX 160829589 160829730 -1770200 - FLAM_C SINE Alu 0 143 9 280 160 0 0 chrX 160829870 160829920 -1770010 + MIR SINE MIR 100 149 -113 1145 202 22 14 chrX 160830098 160830321 -1769609 + L1MB7 LINE L1 5960 6184 0 785 108 49 3 chrX 160830439 160830765 -1769165 + CT-rich Low_complexity Low_complexity 1 341 0 718 133 0 42 chrX 160830765 160830885 -1769045 - FLAM_C SINE Alu -13 130 16 313 318 29 46 chrX 160831450 160831623 -1768307 + L1MEd LINE L1 143 312 -5807 2313 190 45 7 chrX 160831838 160832285 -1767645 - MLT1C LTR MaLR -2 465 2 2488 93 0 25 chrX 160832330 160832685 -1767245 + L1PA13 LINE L1 5804 6149 -14 2174 80 0 0 chrX 160832821 160833095 -1766835 + AluSg SINE Alu 1 274 -36 2137 98 3 3 chrX 160833230 160833526 -1766404 - AluJb SINE Alu 0 312 17 1239 243 131 19 chrX 160834069 160834189 -1765741 + L1MC4 LINE L1 6473 6578 -1464 2323 170 43 17 chrX 160834189 160834392 -1765538 + MSTA LTR MaLR 1 197 -231 279 0 0 0 chrX 160834392 160834423 -1765507 + (TC)n Simple_repeat Simple_repeat 1 31 0 2323 170 43 17 chrX 160834423 160834636 -1765294 + MSTA LTR MaLR 197 428 0 1239 243 131 19 chrX 160834636 160834927 -1765003 + L1MC4 LINE L1 6578 6930 -1112 347 247 134 0 chrX 160834929 160835026 -1764904 + L1M4 LINE L1 3237 3346 -2800 211 129 48 0 chrX 160835156 160835218 -1764712 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 1666 177 0 3 chrX 160835220 160835503 -1764427 - AluJo SINE Alu -30 282 1 336 340 98 0 chrX 160835797 160835951 -1763979 + MIR SINE MIR 29 197 -65 * 1101 115 0 25 chrX 160835950 160836113 -1763817 - AluJb SINE Alu -22 290 138 1895 172 0 13 chrX 160837101 160837415 -1762515 + AluJb SINE Alu 1 310 -2 529 157 0 0 chrX 160837572 160837655 -1762275 - AluJ/FLAM SINE Alu -228 84 2 501 227 0 0 chrX 160838192 160838311 -1761619 + L1M4 LINE L1 3331 3449 -2697 * 572 71 24 0 chrX 160838303 160838387 -1761543 - L1M2 LINE L1 -638 5674 5589 3587 157 33 16 chrX 160838392 160839031 -1760899 + THE1-int LTR MaLR 628 1277 -303 1982 123 3 3 chrX 160840490 160840808 -1759122 + MSTA-int LTR MaLR 1334 1651 0 2319 100 126 5 chrX 160840808 160841189 -1758741 + MSTA LTR MaLR 1 427 -1 570 228 167 37 chrX 160841193 160841439 -1758491 + L1ME LINE L1 5495 5772 -398 1718 150 71 16 chrX 160842090 160842457 -1757473 - L1MA4 LINE L1 -5 6295 5909 225 0 0 0 chrX 160843872 160843897 -1756033 + (TTCTG)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chrX 160843984 160844006 -1755924 + (TGGGGG)n Simple_repeat Simple_repeat 4 25 0 1479 193 7 36 chrX 160845271 160845405 -1754525 + AluJo SINE Alu 1 137 -175 2353 83 0 74 chrX 160845405 160845742 -1754188 + AluSx SINE Alu 1 312 0 1479 193 7 36 chrX 160845742 160845908 -1754022 + AluJo SINE Alu 137 292 -20 882 162 0 42 chrX 160845917 160846084 -1753846 + FRAM SINE Alu 1 154 -22 1348 189 47 10 chrX 160846129 160846430 -1753500 - LTR36 LTR ERV1 0 611 300 485 237 8 0 chrX 160846455 160846573 -1753357 - L1MEc LINE L1 -5651 745 627 330 277 77 23 chrX 160846583 160846713 -1753217 + L1ME LINE L1 5482 5618 -503 4139 189 36 57 chrX 160846718 160847694 -1752236 + LTR5 LTR ERVK 1 955 -14 4034 156 20 3 chrX 160847706 160848390 -1751540 + HERVK LTR ERVK 1 696 -6547 5153 139 1 24 chrX 160848516 160849387 -1750543 + HERVK LTR ERVK 3006 3856 -3387 266 224 59 88 chrX 160849388 160849461 -1750469 + L1MC/D LINE L1 5348 5268 -912 2138 149 0 9 chrX 160849461 160849776 -1750154 - AluSx SINE Alu 0 312 1 266 224 59 88 chrX 160849776 160849919 -1750011 + L1MC/D LINE L1 5267 5413 -767 2667 91 3 0 chrX 160850167 160850530 -1749400 + THE1B LTR MaLR 1 364 0 225 292 0 15 chrX 160850663 160850728 -1749202 - L2 LINE L2 -5 3308 3245 2541 125 39 0 chrX 160851300 160851709 -1748221 + MSTB LTR MaLR 2 426 0 2339 149 19 14 chrX 160852032 160852462 -1747468 + MSTB1 LTR MaLR 1 432 0 1625 208 57 38 chrX 160853018 160853471 -1746459 + MLT1C LTR MaLR 6 467 0 453 234 182 22 chrX 160853484 160853705 -1746225 + MER5C DNA MER1_type 33 294 -30 883 23 45 34 chrX 160853705 160853882 -1746048 + (GA)n Simple_repeat Simple_repeat 2 180 0 2439 81 0 17 chrX 160855244 160855588 -1744342 + THE1B LTR MaLR 1 338 -26 1597 155 40 15 chrX 160855590 160855913 -1744017 + MER61B LTR ERV1 1 425 0 1261 163 0 22 chrX 160856198 160856260 -1743670 + AluJb SINE Alu 83 145 -167 4429 47 50 3 chrX 160856260 160856841 -1743089 - LTR14B LTR ERVK 0 608 1 1261 163 0 22 chrX 160856841 160857005 -1742925 + AluJb SINE Alu 145 304 -8 360 0 0 0 chrX 160858745 160858785 -1741145 + (TG)n Simple_repeat Simple_repeat 1 40 0 300 211 0 0 chrX 160859861 160859937 -1739993 + (TG)n Simple_repeat Simple_repeat 2 77 0 1719 140 0 29 chrX 160861186 160861499 -1738431 - AluJo SINE Alu 0 325 21 848 226 43 4 chrX 160861499 160861733 -1738197 - L2 LINE L2 -375 2939 2697 940 183 96 0 chrX 160862057 160862254 -1737676 - MSTB1 LTR MaLR 0 432 217 2653 46 0 3 chrX 160863089 160863393 -1736537 + AluY SINE Alu 1 303 -8 402 286 81 0 chrX 160863415 160863600 -1736330 + L1M3 LINE L1 3371 3570 -2576 1761 155 7 11 chrX 160863612 160863896 -1736034 + AluJb SINE Alu 8 290 -22 881 192 0 28 chrX 160864193 160864407 -1735523 - L1 LINE L1 -813 5333 5126 * 1263 231 54 3 chrX 160864391 160864724 -1735206 + L1M3 LINE L1 4846 5195 -951 1815 174 142 41 chrX 160865190 160865745 -1734185 + L1M3 LINE L1 5187 5778 -402 529 123 0 0 chrX 160865745 160865826 -1734104 + AluJ/FRAM SINE Alu 218 298 -14 204 40 0 0 chrX 160866097 160866122 -1733808 + (T)n Simple_repeat Simple_repeat 1 25 0 4062 193 30 54 chrX 160866472 160867465 -1732465 - LTR5 LTR ERVK 0 969 1 5425 134 1 1 chrX 160867467 160868290 -1731640 - HERVK LTR ERVK -2 7241 6419 554 204 19 0 chrX 160868390 160868498 -1731432 + AluJb SINE Alu 180 289 -23 3054 211 22 14 chrX 160868534 160869503 -1730427 + L1M1 LINE L1 3295 4276 -3289 1129 143 88 14 chrX 160869504 160869720 -1730210 - THE1C LTR MaLR 0 375 144 1436 221 127 77 chrX 160869720 160870340 -1729590 - MER50 LTR ERV1 0 734 84 5334 140 62 42 chrX 160870377 160870851 -1729079 - THE1C-int LTR MaLR -569 1011 548 1092 61 14 0 chrX 160870851 160870999 -1728931 + L1PA10 LINE L1 6016 6165 -3 5334 140 62 42 chrX 160870999 160871336 -1728594 - THE1C-int LTR MaLR -1032 548 175 2437 65 7 0 chrX 160871336 160871628 -1728302 + AluY SINE Alu 1 294 -17 5334 140 62 42 chrX 160871628 160871807 -1728123 - THE1C-int LTR MaLR -1405 175 1 1710 196 8 26 chrX 160871807 160872189 -1727741 - THE1C LTR MaLR 0 375 1 1071 208 15 0 chrX 160872195 160872469 -1727461 + L1M1 LINE L1 4279 4556 -3009 511 301 16 5 chrX 160873208 160873394 -1726536 + HERVL LTR ERVL 4269 4456 -1198 242 214 71 0 chrX 160874577 160874633 -1725297 - L2 LINE L2 -57 3256 3197 344 229 53 15 chrX 160876027 160876158 -1723772 - L1ME4a LINE L1 -5 6116 5981 322 207 0 49 chrX 160876162 160876244 -1723686 + MIR SINE MIR 185 262 0 3011 65 25 0 chrX 160876272 160876675 -1723255 - L1PA7 LINE L1 -124 6030 5618 807 65 0 0 chrX 160876675 160876837 -1723093 + L1PA6 LINE L1 6046 6208 0 333 305 38 15 chrX 160877083 160877214 -1722716 - LTR16C LTR ERVL -222 269 136 2288 163 45 13 chrX 160878182 160878629 -1721301 - LOR1b LTR ERV1 0 461 1 2429 78 0 3 chrX 160879348 160879643 -1720287 + AluY SINE Alu 1 294 -17 508 163 0 10 chrX 160879643 160879730 -1720200 - FLAM_C SINE Alu -178 134 47 360 275 125 19 chrX 160881388 160881548 -1718382 - L1ME LINE L1 -463 5658 5482 479 237 8 0 chrX 160881558 160881676 -1718254 + L1MEc LINE L1 627 745 -5651 1235 201 59 10 chrX 160881701 160881990 -1717940 + LTR36 LTR ERV1 300 602 -9 1387 208 0 24 chrX 160882044 160882337 -1717593 - AluJo SINE Alu -26 286 1 15183 150 8 9 chrX 160882764 160885800 -1714130 - HERVK LTR ERVK -1154 6195 3255 3249 59 0 0 chrX 160885900 160886339 -1713591 - L1P LINE L1 -854 5292 4854 204 97 0 0 chrX 161089575 161089606 -1510324 + (T)n Simple_repeat Simple_repeat 1 31 0 200 200 21 84 chrX 161093907 161094002 -1505928 + GA-rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chrX 161095094 161095115 -1504815 + AT_rich Low_complexity Low_complexity 1 21 0 321 291 79 24 chrX 161097878 161098005 -1501925 + MIR SINE MIR 1 134 -128 2174 99 44 0 chrX 161099086 161099380 -1500550 - AluSx SINE Alu -5 307 1 821 302 37 3 chrX 161099777 161100072 -1499858 + L1MC4a LINE L1 5632 5936 -1872 394 226 194 7 chrX 161100081 161100236 -1499694 + L1MC4a LINE L1 5986 6169 -1639 727 179 0 121 chrX 161100273 161100454 -1499476 + AluJo SINE Alu 117 268 -44 2054 107 57 0 chrX 161100454 161100734 -1499196 - AluSq SINE Alu -17 296 1 727 179 0 121 chrX 161100734 161100775 -1499155 + AluJo SINE Alu 268 312 0 278 268 228 5 chrX 161100990 161101214 -1498716 - L2 LINE L2 -653 2661 2388 1860 112 108 4 chrX 161101217 161101494 -1498436 + AluSx SINE Alu 1 306 -6 267 73 0 207 chrX 161101656 161101684 -1498246 - L1MB4 LINE L1 -1 6179 6147 1903 131 3 52 chrX 161101684 161101989 -1497941 + AluJb SINE Alu 1 290 -22 402 21 0 0 chrX 161101989 161102036 -1497894 + (TA)n Simple_repeat Simple_repeat 1 47 0 267 73 0 207 chrX 161102036 161102088 -1497842 - L1MB4 LINE L1 -31 6149 6115 2342 88 0 26 chrX 161102096 161102404 -1497526 - AluSx SINE Alu -12 300 1 1669 156 40 7 chrX 161102656 161102958 -1496972 + L1PB4 LINE L1 5844 6155 -1 2445 103 0 3 chrX 161103172 161103483 -1496447 + AluSx SINE Alu 2 311 -1 210 378 25 17 chrX 161103578 161103697 -1496233 - MIR3 SINE MIR -3 205 86 2085 136 3 10 chrX 161104183 161104484 -1495446 + AluSx SINE Alu 1 299 -13 436 290 259 11 chrX 161105096 161105548 -1494382 + L1MC4 LINE L1 7326 7889 -153 1161 86 26 0 chrX 161105730 161105881 -1494049 + AluSg SINE Alu 1 155 -155 2650 191 21 25 chrX 161107280 161107383 -1492547 + L1MB5 LINE L1 5566 5668 -506 2319 105 0 19 chrX 161107383 161107697 -1492233 + AluSx SINE Alu 2 309 -3 2650 191 21 25 chrX 161107697 161108158 -1491772 + L1MB5 LINE L1 5668 6128 -46 334 130 39 13 chrX 161108183 161108260 -1491670 + L1MB8 LINE L1 6088 6166 -12 929 186 177 0 chrX 161108612 161108838 -1491092 - L1MB5 LINE L1 0 6174 5909 707 164 86 0 chrX 161108900 161109040 -1490890 + BC200 scRNA scRNA 8 159 -41 570 136 146 18 chrX 161109063 161109173 -1490757 - FLAM_A SINE Alu -9 124 1 2372 74 0 17 chrX 161110380 161110679 -1489251 + AluSg SINE Alu 1 294 -16 405 0 0 0 chrX 161110748 161110793 -1489137 + (TG)n Simple_repeat Simple_repeat 1 45 0 989 236 78 24 chrX 161111903 161112276 -1487654 + HAL1b LINE L1 15 407 -941 568 241 87 53 chrX 161112325 161112617 -1487313 - L2 LINE L2 -222 3091 2774 723 205 106 0 chrX 161112617 161112778 -1487152 - MER45A DNA AcHobo 0 178 1 568 241 87 53 chrX 161112778 161112861 -1487069 - L2 LINE L2 -539 2774 2695 2101 141 3 3 chrX 161112871 161113169 -1486761 + AluJo SINE Alu 1 298 -14 282 214 68 58 chrX 161113330 161113433 -1486497 - LTR16A LTR ERVL -228 222 119 274 185 0 0 chrX 161113640 161113694 -1486236 - L2 LINE L2 -1007 2307 2254 192 280 27 0 chrX 161113756 161113831 -1486099 - L2 LINE L2 -1198 2116 2040 544 238 20 64 chrX 161113835 161113902 -1486028 - LTR67 LTR ERVL -2 555 487 597 181 31 0 chrX 161113902 161114029 -1485901 + L1MB3 LINE L1 6046 6176 -7 544 238 20 64 chrX 161114029 161114163 -1485767 - LTR67 LTR ERVL -70 487 363 831 271 29 0 chrX 161114339 161114549 -1485381 - MER58A DNA MER1_type -8 216 1 268 370 76 0 chrX 161114742 161115004 -1484926 - L2 LINE L2 -1405 1909 1628 225 330 78 0 chrX 161115037 161115152 -1484778 - L2 LINE L2 -2416 898 775 2421 88 0 0 chrX 161117300 161117605 -1482325 - AluSg SINE Alu -5 305 1 2351 93 3 0 chrX 161117613 161117904 -1482026 - AluSp SINE Alu -21 292 1 1734 185 35 16 chrX 161118004 161118371 -1481559 - MLT1A2 LTR MaLR 0 374 1 705 218 21 0 chrX 161118445 161118616 -1481314 - AluJb SINE Alu 0 310 137 392 86 129 0 chrX 161118624 161118694 -1481236 + L1MB3 LINE L1 6098 6176 -7 332 281 72 29 chrX 161118697 161118836 -1481094 + L1MCa LINE L1 2306 2450 -3976 2559 41 0 50 chrX 161118860 161119179 -1480751 + AluY SINE Alu 1 303 -8 2290 92 7 3 chrX 161119189 161119483 -1480447 + AluSq SINE Alu 1 295 -18 2132 142 0 3 chrX 161119563 161119874 -1480056 + AluJb SINE Alu 1 310 -2 724 298 102 50 chrX 161119889 161120308 -1479622 + L1MCa LINE L1 2639 3035 -3391 2334 91 7 0 chrX 161120308 161120606 -1479324 - AluSq SINE Alu -3 310 11 724 298 102 50 chrX 161120606 161120883 -1479047 + L1MCa LINE L1 3035 3296 -3130 2068 125 3 7 chrX 161120883 161121204 -1478726 + AluSx SINE Alu 1 320 0 724 298 102 50 chrX 161121204 161121505 -1478425 + L1MCa LINE L1 3296 3692 -2734 392 266 44 6 chrX 161121870 161122047 -1477883 - L1M4 LINE L1 -671 5503 5321 291 296 38 30 chrX 161122426 161122558 -1477372 - MIR SINE MIR -122 140 8 327 258 125 23 chrX 161122612 161122740 -1477190 - LTR67 LTR ERVL -8 549 409 319 209 15 0 chrX 161123004 161123071 -1476859 + MLT1J LTR MaLR 1 68 -443 23 33 0 0 chrX 161124165 161124195 -1475735 + AT_rich Low_complexity Low_complexity 1 30 0 655 277 239 57 chrX 161125305 161127300 -1472630 - L2 LINE L2 -46 3267 887 2361 103 0 0 chrX 161127429 161127731 -1472199 - AluSx SINE Alu -10 302 1 2324 105 0 3 chrX 161127763 161128069 -1471861 + AluSq SINE Alu 1 305 -8 877 249 93 32 chrX 161128511 161128888 -1471042 + MLT1C LTR MaLR 7 406 -61 535 245 148 10 chrX 161129018 161129316 -1470614 + L2 LINE L2 1533 1871 -1443 318 26 0 0 chrX 161129670 161129709 -1470221 + (CAGAC)n Simple_repeat Simple_repeat 1 39 0 226 267 187 0 chrX 161129756 161129831 -1470099 - MER5A DNA MER1_type -72 117 29 1699 126 0 32 chrX 161130373 161130651 -1469279 + AluJo SINE Alu 30 298 -14 325 206 184 28 chrX 161130652 161130793 -1469137 - L1M4 LINE L1 -801 5345 5183 1715 142 7 30 chrX 161130800 161131103 -1468827 - AluJb SINE Alu -16 296 1 725 183 0 29 chrX 161131123 161131260 -1468670 - FLAM_A SINE Alu 0 133 1 1157 222 114 41 chrX 161131262 161131381 -1468549 - L1M4 LINE L1 -942 5204 5095 2136 111 0 0 chrX 161131381 161131670 -1468260 + AluSx SINE Alu 1 289 -23 1157 222 114 41 chrX 161131670 161131795 -1468135 - L1M4 LINE L1 -1051 5095 4981 1986 182 59 37 chrX 161131795 161132196 -1467734 + MLT1C LTR MaLR 1 415 -52 1856 122 25 7 chrX 161132196 161132482 -1467448 - AluSx SINE Alu -21 291 1 1986 182 59 37 chrX 161132482 161132535 -1467395 + MLT1C LTR MaLR 415 465 -2 1157 222 114 41 chrX 161132535 161132748 -1467182 - L1M4 LINE L1 -1165 4981 4785 1942 137 7 0 chrX 161132748 161133048 -1466882 - AluSx SINE Alu -10 302 1 1157 222 114 41 chrX 161133048 161133714 -1466216 - L1M4 LINE L1 -1361 4785 3872 2002 125 10 0 chrX 161133714 161134017 -1465913 - AluSx SINE Alu -6 306 1 1157 222 114 41 chrX 161134017 161134112 -1465818 - L1M4 LINE L1 -2274 3872 3785 4968 126 30 38 chrX 161134112 161134399 -1465531 + Tigger1 DNA MER2_type 1 289 -2129 2237 92 0 3 chrX 161134399 161134704 -1465226 + AluSx SINE Alu 1 304 -8 4968 126 30 38 chrX 161134704 161134716 -1465214 + Tigger1 DNA MER2_type 289 300 -2118 2066 108 19 7 chrX 161134716 161135023 -1464907 + AluSx SINE Alu 1 311 -1 4968 126 30 38 chrX 161135023 161135530 -1464400 + Tigger1 DNA MER2_type 300 801 -1617 869 218 0 0 chrX 161135600 161135756 -1464174 - AluJo SINE Alu -40 272 117 272 303 45 28 chrX 161135760 161135875 -1464055 + L1MC4a LINE L1 6413 6534 -1274 1897 143 0 25 chrX 161135875 161136189 -1463741 + AluJo SINE Alu 1 306 -6 272 303 45 28 chrX 161136189 161136251 -1463679 + L1MC4a LINE L1 6534 6593 -1215 305 105 0 0 chrX 161136265 161136303 -1463627 + FLAM_C SINE Alu 5 42 -92 810 92 25 17 chrX 161136355 161136474 -1463456 + FLAM_C SINE Alu 24 143 0 924 224 104 72 chrX 161136478 161137430 -1462500 + L1MC5 LINE L1 6613 7533 -509 779 165 0 0 chrX 161137430 161137551 -1462379 + FLAM_A SINE Alu 1 121 -12 924 224 104 72 chrX 161137551 161137666 -1462264 + L1MC5 LINE L1 7533 7643 -399 2152 91 7 26 chrX 161137666 161137975 -1461955 + AluSx SINE Alu 1 303 -9 924 224 104 72 chrX 161137975 161138328 -1461602 + L1MC5 LINE L1 7643 7983 -59 911 243 141 65 chrX 161138362 161138410 -1461520 + HAL1 LINE L1 1084 1127 -1380 2014 99 54 0 chrX 161138410 161138704 -1461226 + AluSx SINE Alu 1 310 -2 911 243 141 65 chrX 161138704 161139194 -1460736 + HAL1 LINE L1 1127 1663 -844 537 283 73 41 chrX 161139196 161139589 -1460341 - MLT1L LTR MaLR -2 613 179 288 247 13 13 chrX 161139639 161139716 -1460214 - MLT1L LTR MaLR -538 77 1 602 239 142 44 chrX 161139717 161139943 -1459987 + HAL1 LINE L1 1664 1911 -596 336 352 55 16 chrX 161140295 161140477 -1459453 + HAL1b LINE L1 720 908 -440 2162 106 0 0 chrX 161140504 161140796 -1459134 + AluSx SINE Alu 1 292 -20 434 290 72 19 chrX 161140828 161141090 -1458840 + HAL1 LINE L1 2228 2503 -4 600 266 123 83 chrX 161141152 161141398 -1458532 + L2 LINE L2 2804 3077 -195 2089 142 39 6 chrX 161141398 161141735 -1458195 - MER7A DNA MER2_type 0 346 1 600 266 123 83 chrX 161141735 161141935 -1457995 + L2 LINE L2 3077 3268 -4 3640 72 2 0 chrX 161142166 161142636 -1457294 + L1PB1 LINE L1 5680 6150 -1 21 0 0 0 chrX 161142641 161142662 -1457268 + AT_rich Low_complexity Low_complexity 1 21 0 928 256 123 58 chrX 161142763 161142875 -1457055 - L2 LINE L2 -710 2604 2501 1896 85 81 7 chrX 161142875 161143147 -1456783 + AluSg SINE Alu 1 292 -18 2756 10 0 0 chrX 161143149 161143458 -1456472 + AluYb8 SINE Alu 1 309 -9 928 256 123 58 chrX 161143458 161143724 -1456206 - L2 LINE L2 -813 2501 2198 293 174 137 56 chrX 161143780 161143941 -1455989 + L1ME4a LINE L1 5944 6117 -4 1759 162 13 10 chrX 161143945 161144254 -1455676 + AluJb SINE Alu 1 310 -2 352 258 107 44 chrX 161144302 161144398 -1455532 + L1ME4a LINE L1 5835 5946 -175 1704 155 24 7 chrX 161144398 161144688 -1455242 + AluJb SINE Alu 1 295 -17 352 258 107 44 chrX 161144688 161144750 -1455180 + L1ME4a LINE L1 5946 6003 -118 2068 93 7 0 chrX 161144752 161145073 -1454857 + AluSc SINE Alu 1 323 0 822 164 0 0 chrX 161145303 161145425 -1454505 - FLAM_A SINE Alu -11 122 1 1608 173 148 42 chrX 161145472 161145816 -1454114 - Charlie4a DNA MER1_type -1453 508 202 2354 84 0 0 chrX 161145816 161146115 -1453815 - AluSx SINE Alu -13 299 1 895 145 0 0 chrX 161146118 161146249 -1453681 - AluJo/FLAM SINE Alu -170 132 2 1608 173 148 42 chrX 161146249 161146333 -1453597 - Charlie4a DNA MER1_type -1760 201 30 880 103 0 16 chrX 161146445 161146571 -1453359 - FLAM_C SINE Alu -19 124 1 2253 97 0 0 chrX 161147093 161147392 -1452538 - AluSx SINE Alu -13 299 1 21 0 0 0 chrX 161148404 161148425 -1451505 + AT_rich Low_complexity Low_complexity 1 21 0 2069 107 40 0 chrX 161148759 161149059 -1450871 + AluSx SINE Alu 1 312 0 318 287 112 137 chrX 161149102 161149503 -1450427 + L2 LINE L2 2859 3249 -23 1505 175 0 63 chrX 161149981 161150312 -1449618 + AluJo SINE Alu 2 311 -1 343 265 75 27 chrX 161150317 161150464 -1449466 + L1MC4a LINE L1 5758 5911 -1897 1044 154 28 28 chrX 161150552 161150766 -1449164 + L1MB3 LINE L1 5951 6164 -19 2333 49 0 3 chrX 161150775 161151063 -1448867 - AluY SINE Alu -24 287 1 28 0 0 0 chrX 161151065 161151093 -1448837 + AT_rich Low_complexity Low_complexity 1 28 0 2261 79 0 3 chrX 161151112 161151402 -1448528 - AluSc SINE Alu -20 289 1 2180 114 0 0 chrX 161151505 161151804 -1448126 - AluSq SINE Alu -14 299 1 2163 116 3 0 chrX 161151813 161152116 -1447814 - AluSx SINE Alu -8 304 1 889 132 0 107 chrX 161152379 161152576 -1447354 - FRAM SINE Alu 0 176 1 284 232 116 0 chrX 161152951 161153020 -1446910 + L2 LINE L2 3196 3272 0 2187 107 0 0 chrX 161153302 161153602 -1446328 - AluSx SINE Alu -12 300 1 2482 52 0 3 chrX 161153712 161154021 -1445909 + AluY SINE Alu 1 308 -3 228 315 94 8 chrX 161154212 161154339 -1445591 + L1ME4a LINE L1 5463 5600 -2208 236 227 113 64 chrX 161154498 161154535 -1445395 + L1ME4a LINE L1 5878 5912 -209 2166 86 4 0 chrX 161154535 161154845 -1445085 + AluSx SINE Alu 1 311 0 236 227 113 64 chrX 161154845 161154947 -1444983 + L1ME4a LINE L1 5912 6025 -96 2181 106 0 0 chrX 161154988 161155290 -1444640 - AluSx SINE Alu -10 302 1 239 0 32 0 chrX 161156221 161156252 -1443678 + (CAA)n Simple_repeat Simple_repeat 2 33 0 192 152 0 0 chrX 161156930 161156963 -1442967 + T-rich Low_complexity Low_complexity 1 33 0 262 300 118 18 chrX 161158212 161158322 -1441608 + MIR3 SINE MIR 78 198 -10 2119 79 6 70 chrX 161158362 161158692 -1441238 + AluSg1 SINE Alu 1 309 0 29 28 0 0 chrX 161162065 161162101 -1437829 + GC_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chrX 161162157 161162184 -1437746 + GC_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chrX 161162488 161162508 -1437422 + (CGG)n Simple_repeat Simple_repeat 3 22 0 22 35 0 0 chrX 161162637 161162666 -1437264 + GC_rich Low_complexity Low_complexity 1 29 0 1341 269 212 26 chrX 161163597 161164001 -1435929 - L2 LINE L2 -19 3294 2967 1763 136 7 4 chrX 161164001 161164280 -1435650 - AluJb SINE Alu -32 280 1 1341 269 212 26 chrX 161164280 161164762 -1435168 - L2 LINE L2 -346 2967 2264 544 243 203 67 chrX 161164806 161165223 -1434707 + L1M4 LINE L1 3071 3430 -2716 261 0 0 0 chrX 161165223 161165252 -1434678 + (GA)n Simple_repeat Simple_repeat 2 30 0 544 243 203 67 chrX 161165252 161165612 -1434318 + L1M4 LINE L1 3430 3950 -2196 1431 129 4 37 chrX 161165634 161165875 -1434055 + AluJo SINE Alu 74 306 -6 2040 97 0 17 chrX 161165878 161166166 -1433764 + AluSc SINE Alu 1 283 -26 537 144 0 0 chrX 161166166 161166256 -1433674 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 5579 131 27 30 chrX 161166274 161166347 -1433583 + L1MA6 LINE L1 5324 5396 -904 1761 168 7 3 chrX 161166347 161166642 -1433288 + AluJo SINE Alu 2 300 -12 195 42 0 0 chrX 161166642 161166666 -1433264 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 5579 131 27 30 chrX 161166674 161167356 -1432574 + L1MA6 LINE L1 5396 6078 -222 1921 126 14 17 chrX 161167356 161167650 -1432280 + AluSx SINE Alu 1 293 -19 5579 131 27 30 chrX 161167650 161167868 -1432062 + L1MA6 LINE L1 6078 6295 -5 284 321 22 44 chrX 161167999 161168270 -1431660 + L1M4 LINE L1 4339 4603 -1543 2407 72 0 0 chrX 161168466 161168770 -1431160 + AluY SINE Alu 1 304 -7 378 139 16 6 chrX 161169029 161169280 -1430650 + AluJo SINE Alu 1 297 -5 666 109 0 0 chrX 161169437 161169556 -1430374 + (CA)n Simple_repeat Simple_repeat 2 120 0 2217 109 0 3 chrX 161169615 161169927 -1430003 + AluSx SINE Alu 1 311 -1 1395 249 98 50 chrX 161170479 161171355 -1428575 + HAL1 LINE L1 812 1955 -552 2424 66 0 0 chrX 161171355 161171657 -1428273 + AluSx SINE Alu 1 302 -10 1395 249 98 50 chrX 161171657 161171790 -1428140 + HAL1 LINE L1 1955 2080 -427 2325 60 3 3 chrX 161171803 161172104 -1427826 + AluY SINE Alu 6 306 -5 2097 128 0 10 chrX 161172126 161172439 -1427491 + AluSx SINE Alu 1 310 -2 1020 89 19 25 chrX 161172970 161173127 -1426803 - AluSg/x SINE Alu -10 302 147 1441 104 0 0 chrX 161173127 161173319 -1426611 - MSTA LTR MaLR -236 192 1 283 248 26 4 chrX 161173529 161173626 -1426304 - LTR33 LTR ERVL -345 176 61 583 118 21 0 chrX 161173675 161173768 -1426162 - L1MC1 LINE L1 0 6333 6239 4327 121 3 2 chrX 161173768 161174397 -1425533 - L1MC1 LINE L1 -385 5948 5319 1043 133 0 6 chrX 161174399 161174588 -1425342 - AluSg/x SINE Alu 0 316 129 2141 75 72 0 chrX 161174597 161174889 -1425041 - AluSq SINE Alu 0 313 1 1176 223 49 0 chrX 161174892 161175157 -1424773 - L1MCa LINE L1 -2295 4131 3854 1419 174 188 0 chrX 161175158 161175451 -1424479 - MER7A DNA MER2_type 0 346 1 3915 209 37 53 chrX 161175455 161175571 -1424359 - L1MCa LINE L1 -2576 3850 3734 2054 131 0 10 chrX 161175571 161175883 -1424047 + AluSx SINE Alu 1 309 -3 3915 209 37 53 chrX 161175883 161176222 -1423708 - L1MCa LINE L1 -2692 3734 3391 915 149 0 0 chrX 161176222 161176363 -1423567 - FLAM_C SINE Alu -2 141 1 3915 209 37 53 chrX 161176363 161177113 -1422817 - L1MCa LINE L1 -3035 3391 2630 2162 72 48 3 chrX 161177113 161177405 -1422525 - AluSp SINE Alu -8 305 1 3915 209 37 53 chrX 161177405 161177628 -1422302 - L1MCa LINE L1 -3796 2630 2405 2097 102 0 0 chrX 161177628 161177944 -1421986 - AluSx SINE Alu 0 316 1 3915 209 37 53 chrX 161177944 161178706 -1421224 - L1MCa LINE L1 -4021 2405 1529 2177 134 99 3 chrX 161178707 161179072 -1420858 - L1MCa LINE L1 -5953 473 74 191 250 83 0 chrX 161179976 161180036 -1419894 + L2 LINE L2 3208 3272 0 623 243 184 13 chrX 161180481 161180790 -1419140 - HAL1 LINE L1 -637 1870 1509 428 62 16 0 chrX 161180792 161180856 -1419074 + (TG)n Simple_repeat Simple_repeat 1 65 0 601 235 145 17 chrX 161180937 161181287 -1418643 + MER74B LTR ERVL 65 548 -74 450 278 83 0 chrX 161181343 161181523 -1418407 - HAL1 LINE L1 -1010 1497 1303 680 282 59 16 chrX 161181545 161181800 -1418130 - HAL1 LINE L1 -1832 675 410 1917 155 7 0 chrX 161181959 161182268 -1417662 - AluSx SINE Alu -1 311 1 1360 239 55 29 chrX 161182529 161182947 -1416983 + L1ME1 LINE L1 5692 6120 -46 255 65 0 109 chrX 161182954 161183000 -1416930 - FLAM_A SINE Alu -6 127 87 709 122 0 0 chrX 161183010 161183108 -1416822 - FLAM_A SINE Alu -44 98 1 1630 167 10 14 chrX 161183136 161183424 -1416506 - AluJo SINE Alu -25 287 1 347 285 44 0 chrX 161183555 161183692 -1416238 - L1M4 LINE L1 -1062 5084 4942 2236 92 7 0 chrX 161183707 161184011 -1415919 - AluSx SINE Alu 0 312 7 1630 273 42 42 chrX 161184014 161184217 -1415713 - L1M4 LINE L1 -2058 4088 3886 1758 153 20 0 chrX 161184217 161184382 -1415548 - AluJb SINE Alu -12 300 125 387 0 0 0 chrX 161184382 161184425 -1415505 + (TG)n Simple_repeat Simple_repeat 2 44 0 1758 153 20 0 chrX 161184425 161184553 -1415377 - AluJb SINE Alu -187 125 1 1630 273 42 42 chrX 161184553 161184669 -1415261 - L1M4 LINE L1 -2260 3886 3771 2258 96 0 3 chrX 161184669 161184981 -1414949 - AluSx SINE Alu -1 311 1 1630 273 42 42 chrX 161184981 161185492 -1414438 - L1M4 LINE L1 -2374 3772 3257 2236 65 4 0 chrX 161185813 161186092 -1413838 - AluSg SINE Alu -30 280 1 2356 74 0 17 chrX 161286627 161286926 -1313004 + AluSg SINE Alu 1 294 -16 423 0 0 0 chrX 161286995 161287042 -1312888 + (TG)n Simple_repeat Simple_repeat 1 47 0 973 233 78 24 chrX 161288151 161288524 -1311406 + HAL1b LINE L1 15 407 -941 639 237 85 66 chrX 161288573 161288865 -1311065 - L2 LINE L2 -222 3091 2806 785 205 106 0 chrX 161288865 161289026 -1310904 - MER45A DNA AcHobo 0 178 1 639 237 85 66 chrX 161289026 161289119 -1310811 - L2 LINE L2 -507 2806 2697 2101 141 3 3 chrX 161289119 161289418 -1310512 + AluJo SINE Alu 1 299 -13 639 237 85 66 chrX 161289418 161289467 -1310463 - L2 LINE L2 -616 2697 2650 258 223 68 58 chrX 161289579 161289682 -1310248 - LTR16A LTR ERVL -228 222 119 288 185 0 0 chrX 161289889 161289943 -1309987 - L2 LINE L2 -1007 2307 2254 210 280 27 0 chrX 161290005 161290080 -1309850 - L2 LINE L2 -1198 2116 2040 471 251 16 49 chrX 161290084 161290146 -1309784 - LTR67 LTR ERVL -2 555 492 633 191 30 0 chrX 161290146 161290277 -1309653 + L1MB4 LINE L1 6040 6174 -6 471 251 16 49 chrX 161290277 161290397 -1309533 - LTR67 LTR ERVL -65 492 379 791 271 29 0 chrX 161290588 161290798 -1309132 - MER58A DNA MER1_type -8 216 1 300 370 76 0 chrX 161290991 161291253 -1308677 - L2 LINE L2 -1405 1909 1628 208 319 76 28 chrX 161291286 161291430 -1308500 - L2 LINE L2 -2416 898 748 2403 88 0 0 chrX 161293549 161293854 -1306076 - AluSg SINE Alu -5 305 1 2338 93 3 0 chrX 161293862 161294153 -1305777 - AluSp SINE Alu -21 292 1 1860 185 35 16 chrX 161294253 161294620 -1305310 - MLT1A2 LTR MaLR 0 374 1 764 218 21 0 chrX 161294694 161294865 -1305065 - AluJb SINE Alu 0 310 137 411 86 129 0 chrX 161294873 161294943 -1304987 + L1MB3 LINE L1 6098 6176 -7 331 273 72 29 chrX 161294946 161295085 -1304845 + L1MCa LINE L1 2306 2450 -3976 1828 151 0 63 chrX 161295109 161295441 -1304489 + AluJo SINE Alu 1 311 -1 317 265 75 27 chrX 161295446 161295593 -1304337 + L1MC4a LINE L1 5758 5911 -1897 1046 154 28 28 chrX 161295681 161295895 -1304035 + L1MB3 LINE L1 5951 6164 -19 2465 49 0 3 chrX 161295904 161296192 -1303738 - AluY SINE Alu -24 287 1 28 0 0 0 chrX 161296194 161296222 -1303708 + AT_rich Low_complexity Low_complexity 1 28 0 2403 79 0 3 chrX 161296241 161296531 -1303399 - AluSc SINE Alu -20 289 1 2329 114 0 0 chrX 161296634 161296933 -1302997 - AluSq SINE Alu -14 299 1 2316 116 3 0 chrX 161296942 161297245 -1302685 - AluSx SINE Alu -8 304 1 974 132 0 107 chrX 161297508 161297705 -1302225 - FRAM SINE Alu 0 176 1 287 232 116 0 chrX 161298080 161298149 -1301781 + L2 LINE L2 3196 3272 0 467 137 0 0 chrX 161298425 161298498 -1301432 - Alu SINE Alu -6 306 234 242 296 65 12 chrX 161498566 161498735 -1101195 - L1MDa LINE L1 -2382 4044 3867 1133 153 11 0 chrX 161498749 161498938 -1100992 - Tigger2 DNA MER2_type 0 2718 2528 3873 117 9 27 chrX 161498946 161499276 -1100654 - Tigger2 DNA MER2_type -315 2403 2089 4034 34 0 0 chrX 161499276 161499752 -1100178 - L1PA4 LINE L1 -8 6147 5672 3873 117 9 27 chrX 161499752 161500081 -1099849 - Tigger2 DNA MER2_type -629 2089 1756 932 140 59 21 chrX 161500119 161500305 -1099625 - MER46A DNA MER2_type 0 236 44 821 237 71 15 chrX 161500419 161500871 -1099059 - L1MDa LINE L1 -3757 2694 2193 363 44 0 0 chrX 161500976 161501021 -1098909 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 864 132 31 0 chrX 161501026 161501155 -1098775 - FRAM SINE Alu -34 142 10 400 293 87 38 chrX 161501202 161501649 -1098281 - L1MDa LINE L1 -4579 2028 1560 1223 244 105 35 chrX 161501664 161501879 -1098051 + MLT1E3 LTR MaLR 1 200 -424 6992 52 20 0 chrX 161501879 161503035 -1096895 - L1PA6 LINE L1 0 6154 4987 1223 244 105 35 chrX 161503035 161503328 -1096602 + MLT1E3 LTR MaLR 200 539 -85 5711 72 10 15 chrX 161503329 161504186 -1095744 - MER11C LTR ERVK 0 1071 239 3171 49 5 0 chrX 161504292 161504702 -1095228 - MER11C LTR ERVK -659 412 1 537 112 11 0 chrX 161504702 161504791 -1095139 + MLT1E3 LTR MaLR 535 624 0 233 294 22 0 chrX 161504810 161504902 -1095028 - L1MDa LINE L1 -5098 1328 1235 315 284 91 0 chrX 161504903 161504991 -1094939 - L2 LINE L2 -29 3284 3189 * 679 332 92 42 chrX 161504989 161505864 -1094066 + L2 LINE L2 2354 3272 0 480 336 130 61 chrX 161505871 161506365 -1093565 - L3 LINE CR1 -860 717 190 312 355 99 9 chrX 161507007 161507218 -1092712 + L2 LINE L2 2511 2740 -574 233 299 81 0 chrX 161507188 161507275 -1092655 + L2 LINE L2 2978 3071 -201 * 335 308 117 0 chrX 161507464 161507584 -1092346 + L2 LINE L2 2921 3054 -218 2891 242 65 57 chrX 161507611 161508434 -1091496 - L2 LINE L2 -6 3307 2492 1760 136 221 8 chrX 161508434 161508787 -1091143 - MSTA LTR MaLR 0 428 1 9843 107 16 61 chrX 161508789 161510439 -1089491 - MSTA-int LTR MaLR -2 1578 3 1591 166 57 38 chrX 161510441 161510809 -1089121 - THE1C LTR MaLR 0 375 1 2891 242 65 57 chrX 161510809 161511104 -1088826 - L2 LINE L2 -821 2492 2150 550 288 91 50 chrX 161511337 161511564 -1088366 - MER102b DNA MER1_type -1096 332 87 1353 262 60 22 chrX 161511564 161512011 -1087919 - LTR16B LTR ERVL 0 464 1 550 288 91 50 chrX 161512011 161512102 -1087828 - MER102b DNA MER1_type -1341 87 1 2464 278 68 22 chrX 161512465 161513896 -1086034 + L1M4 LINE L1 2519 4015 -2131 298 329 63 11 chrX 161513912 161514181 -1085749 + L1MEc LINE L1 880 1247 -5360 1548 81 9 7 chrX 161514189 161514407 -1085523 + L1PA4 LINE L1 5436 5662 -492 1182 74 6 0 chrX 161514407 161514570 -1085360 + L1PA4 LINE L1 5992 6155 0 1548 81 9 7 chrX 161514570 161514589 -1085341 + L1PA4 LINE L1 5662 5679 -475 21 0 0 0 chrX 161514660 161514681 -1085249 + AT_rich Low_complexity Low_complexity 1 21 0 373 274 19 19 chrX 161514966 161515072 -1084858 + MER5B DNA MER1_type 72 177 -1 3697 60 8 0 chrX 161515564 161516048 -1083882 + L1PA7 LINE L1 5662 6149 -5 1616 256 81 29 chrX 161516104 161516824 -1083106 + L1M4 LINE L1 3699 4455 -1691 437 220 60 90 chrX 161516819 161517034 -1082896 - L1ME LINE L1 -670 5496 5287 * 2292 96 0 3 chrX 161517034 161517327 -1082603 - AluSg SINE Alu -18 292 1 437 220 60 90 chrX 161517327 161517403 -1082527 - L1ME LINE L1 -879 5287 5210 1512 188 15 6 chrX 161517411 161517751 -1082179 - L1 LINE L1 -882 5088 4746 185 355 73 36 chrX 161518223 161518333 -1081597 + L2 LINE L2 3115 3228 -44 2588 27 3 0 chrX 161518338 161518631 -1081299 + AluY SINE Alu 1 294 -17 228 240 0 0 chrX 161519225 161519275 -1080655 + (CA)n Simple_repeat Simple_repeat 2 51 0 525 230 0 9 chrX 161519616 161519729 -1080201 - MIR SINE MIR -74 188 77 1665 123 19 109 chrX 161519848 161520214 -1079716 - MER7A DNA MER2_type -15 331 1 238 122 0 24 chrX 161520733 161520774 -1079156 + U6 snRNA snRNA 2 41 -66 353 109 16 16 chrX 161520775 161520839 -1079091 - L1MB2 LINE L1 -7 6164 6101 259 191 15 29 chrX 161520990 161521058 -1078872 + L1MCb LINE L1 498 564 -5481 1227 199 33 119 chrX 161521167 161521594 -1078336 - MLT1C LTR MaLR 0 390 1 1428 246 34 32 chrX 161521599 161522104 -1077826 + L1MCb LINE L1 558 1063 -4982 * 2902 157 50 0 chrX 161522098 161522672 -1077258 - L1 LINE L1 -1496 4650 4048 889 121 0 0 chrX 161522672 161522813 -1077117 + L1 LINE L1 4665 4805 -1341 180 0 0 0 chrX 161522825 161522845 -1077085 + (CA)n Simple_repeat Simple_repeat 2 21 0 998 212 25 25 chrX 161522850 161523133 -1076797 + L1MCb LINE L1 1540 1822 -4742 1426 236 11 26 chrX 161523259 161523396 -1076534 - L1 LINE L1 -1616 4354 4216 6998 61 3 0 chrX 161523396 161524613 -1075317 + L1PA7 LINE L1 4933 6152 -2 1426 236 11 26 chrX 161524613 161524928 -1075002 - L1 LINE L1 -1754 4216 3909 2735 262 34 18 chrX 161525045 161526165 -1073765 - L1M4c LINE L1 -4535 1778 777 1048 294 64 17 chrX 161526366 161526752 -1073178 - L1 LINE L1 -5218 673 1 2680 252 33 71 chrX 161526758 161527273 -1072657 - L2 LINE L2 -1609 1705 1241 2426 169 37 19 chrX 161527273 161527810 -1072120 + L1MA8 LINE L1 5742 6288 -3 2680 252 33 71 chrX 161527810 161528240 -1071690 - L2 LINE L2 -2073 1241 796 334 253 11 33 chrX 161528330 161528421 -1071509 - L2 LINE L2 -2771 543 455 329 316 43 43 chrX 161528524 161528711 -1071219 - L2 LINE L2 -683 2631 2445 709 331 129 40 chrX 161529360 161529929 -1070001 - L2 LINE L2 0 3272 2649 394 100 0 122 chrX 161530034 161530069 -1069861 - MER58 DNA MER1_type 0 2420 2382 1500 210 55 6 chrX 161530069 161530417 -1069513 + MLT1A1 LTR MaLR 1 365 0 394 100 0 122 chrX 161530417 161530471 -1069459 - MER58 DNA MER1_type -38 2382 2342 1709 189 44 30 chrX 161530475 161530840 -1069090 - MLT1A2 LTR MaLR 0 374 5 1766 278 72 37 chrX 161530845 161531260 -1068670 - MLT1A2-int LTR MaLR -1 1370 971 1491 142 0 0 chrX 161531260 161531472 -1068458 + AluSq SINE Alu 55 266 -47 1766 278 72 37 chrX 161531472 161532285 -1067645 - MLT1A2-int LTR MaLR -400 971 1 366 123 0 0 chrX 161532340 161532397 -1067533 + (TG)n Simple_repeat Simple_repeat 2 58 0 1248 223 190 31 chrX 161532399 161532784 -1067146 - MLT2B1 LTR ERVL -74 446 1 346 280 8 17 chrX 161532789 161532907 -1067023 - MER58 DNA MER1_type -92 123 7 396 0 0 0 chrX 161533027 161533071 -1066859 + (CA)n Simple_repeat Simple_repeat 2 45 0 517 190 25 111 chrX 161533465 161533744 -1066186 - L1M4b LINE L1 -5399 1460 1206 581 171 9 0 chrX 161533815 161533920 -1066010 + MER20 DNA MER1_type 1 106 -113 503 270 30 98 chrX 161533996 161534127 -1065803 - L1M4b LINE L1 -5667 1188 1050 2376 154 73 2 chrX 161534127 161534522 -1065408 + MSTB LTR MaLR 1 423 -3 503 270 30 98 chrX 161534522 161534727 -1065203 - L1M4b LINE L1 -5805 1050 875 337 292 13 52 chrX 161534880 161535034 -1064896 - L1M4b LINE L1 -6566 293 146 2599 197 37 13 chrX 161535052 161535677 -1064253 - L1MA9 LINE L1 -38 6274 5635 2142 151 7 6 chrX 161535677 161536347 -1063583 + L1MA9 LINE L1 4940 5610 -702 387 208 92 25 chrX 161536345 161536465 -1063465 - L1M4b LINE L1 -6702 157 30 * 351 353 33 0 chrX 161536536 161536658 -1063272 + MIR SINE MIR 29 154 -108 256 298 33 61 chrX 161536709 161536890 -1063040 - L1ME LINE L1 -313 5808 5633 3527 107 16 0 chrX 161536890 161537404 -1062526 + L1PB3 LINE L1 5633 6154 0 22 35 0 0 chrX 161537404 161537433 -1062497 + AT_rich Low_complexity Low_complexity 1 29 0 418 278 114 21 chrX 161537449 161537987 -1061943 - L1ME LINE L1 -812 5334 5058 240 188 0 47 chrX 161538163 161538227 -1061703 - L1MC4 LINE L1 0 8042 7982 2051 134 134 8 chrX 161538227 161538607 -1061323 - MSTA LTR MaLR 0 428 1 9538 123 16 44 chrX 161538615 161540238 -1059692 - MSTA-int LTR MaLR 0 1580 3 2078 133 135 0 chrX 161540240 161540617 -1059313 - MSTA LTR MaLR 0 428 1 399 299 30 5 chrX 161540775 161540976 -1058954 - L1ME LINE L1 -1218 4928 4723 4077 208 72 22 chrX 161541452 161543494 -1056436 + L1MD2 LINE L1 4016 6349 -10 35581 31 10 1 chrX 161543687 161549719 -1050211 + L1HS LINE L1 1 6155 0 395 162 0 15 chrX 161549787 161549855 -1050075 - MER58A DNA MER1_type 0 224 158 237 277 98 18 chrX 161549856 161549968 -1049962 - MER58A DNA MER1_type 0 121 1 23 0 0 0 chrX 161550081 161550104 -1049826 + AT_rich Low_complexity Low_complexity 1 23 0 227 296 45 0 chrX 161550129 161550217 -1049713 + L1ME4a LINE L1 5527 5618 -503 28 29 0 0 chrX 161550425 161550460 -1049470 + AT_rich Low_complexity Low_complexity 1 35 0 283 257 73 55 chrX 161550465 161550683 -1049247 + L1ME4a LINE L1 5868 6089 -32 350 262 255 21 chrX 161550953 161551098 -1048832 + MIR3 SINE MIR 25 203 -5 351 271 35 58 chrX 161552010 161552106 -1047824 + MIR SINE MIR 5 101 -107 216 0 0 0 chrX 161552106 161552130 -1047800 + (CA)n Simple_repeat Simple_repeat 2 25 0 351 271 35 58 chrX 161552130 161552167 -1047763 + MIR SINE MIR 101 137 -71 329 332 36 27 chrX 161552276 161552448 -1047482 - MIR SINE MIR -62 146 19 3737 14 0 2 chrX 161553138 161553569 -1046361 + L1PA3 LINE L1 5726 6155 0 2294 134 68 24 chrX 161554241 161554651 -1045279 - MSTA LTR MaLR 0 428 1 6477 27 0 0 chrX 161554678 161555503 -1044427 + L1PA3 LINE L1 5347 6171 0 22 88 0 0 chrX 161555535 161555592 -1044338 + AT_rich Low_complexity Low_complexity 1 57 0 703 262 21 37 chrX 161556295 161556486 -1043444 + MIR SINE MIR 2 189 -73 221 234 0 0 chrX 161556556 161556603 -1043327 + MIR SINE MIR 216 262 0 381 307 61 24 chrX 161559233 161559445 -1040485 + L1M4b LINE L1 17 236 -6623 42329 36 2 1 chrX 161559573 161565730 -1034200 + L1PA3 LINE L1 9 6170 0 703 309 20 37 chrX 161565885 161566238 -1033692 + L1M4b LINE L1 853 1199 -5656 1843 220 62 34 chrX 161566241 161566702 -1033228 + L1M4b LINE L1 1344 1834 -5091 1652 185 62 67 chrX 161566702 161567091 -1032839 - MLT1B LTR MaLR 0 390 4 1843 220 62 34 chrX 161567091 161567328 -1032602 + L1M4b LINE L1 1834 2063 -4862 * 7838 175 11 15 chrX 161567321 161569011 -1030919 + L1P4 LINE L1 3739 5420 -745 1924 153 0 13 chrX 161569011 161569319 -1030611 + AluSx SINE Alu 1 304 -8 7838 175 11 15 chrX 161569319 161569362 -1030568 + L1P4 LINE L1 5420 5462 -703 274 29 0 0 chrX 161569443 161569477 -1030453 - MADE1 DNA Mariner 0 80 47 2886 279 41 9 chrX 161569544 161570579 -1029351 + L1MA4A LINE L1 821 1778 -5431 4837 157 26 24 chrX 161570580 161571232 -1028698 + L1PB4 LINE L1 4232 4881 -1275 1235 160 0 19 chrX 161571232 161571445 -1028485 - L1PA16 LINE L1 -1 6165 5957 4837 157 26 24 chrX 161571445 161572265 -1027665 + L1PB4 LINE L1 4881 5710 -446 1306 137 80 145 chrX 161572265 161572472 -1027458 - THE1C LTR MaLR 0 375 205 14107 54 2 0 chrX 161572472 161575050 -1024880 + L1PA5 LINE L1 3571 6154 0 1306 137 80 145 chrX 161575050 161575243 -1024687 - THE1C LTR MaLR -170 205 1 2490 154 32 0 chrX 161575243 161575678 -1024252 + L1PB4 LINE L1 5706 6154 -2 13207 186 27 32 chrX 161575696 161577120 -1022810 + L1MA4A LINE L1 2070 3500 -3865 408 20 0 0 chrX 161577120 161577169 -1022761 + (CA)n Simple_repeat Simple_repeat 2 50 0 13207 186 27 32 chrX 161577169 161577657 -1022273 + L1MA4A LINE L1 3500 3989 -3376 2374 76 3 10 chrX 161577657 161577958 -1021972 + AluSp SINE Alu 1 299 -14 13207 186 27 32 chrX 161577958 161580881 -1019049 + L1MA4A LINE L1 3989 6895 -470 2268 93 7 7 chrX 161580881 161581182 -1018748 + AluSx SINE Alu 1 301 -11 13207 186 27 32 chrX 161581182 161581651 -1018279 + L1MA4A LINE L1 6895 7365 0 669 241 56 9 chrX 161581644 161581876 -1018054 + L1M4c LINE L1 1591 1833 -4551 * 1913 237 79 47 chrX 161582051 161583366 -1016564 + L1M4c LINE L1 1898 3211 -3171 7177 221 23 34 chrX 161583366 161586571 -1013359 + L1MA8 LINE L1 9 6363 -132 10546 131 29 4 chrX 161586574 161588291 -1011639 + Tigger2 DNA MER2_type 1 1759 -959 250 270 16 16 chrX 161588304 161588367 -1011563 - L3 LINE CR1 -1193 384 322 3030 23 0 0 chrX 161588601 161588949 -1010981 - L1PA4 LINE L1 -8 6147 5800 3184 29 0 0 chrX 161588949 161589334 -1010596 + L1P2 LINE L1 5380 5764 -391 7764 110 24 5 chrX 161589459 161590626 -1009304 + THE1B-int LTR MaLR 392 1580 0 2196 138 96 3 chrX 161590626 161590959 -1008971 + THE1B LTR MaLR 1 364 0 339 232 0 12 chrX 161590959 161591041 -1008889 + L1M1 LINE L1 3539 3619 -3946 * 1449 261 120 30 chrX 161591039 161591808 -1008122 + L1M1 LINE L1 4140 4977 -2588 4527 121 17 5 chrX 161591811 161592474 -1007456 + L1PB3 LINE L1 5484 6154 0 925 244 29 0 chrX 161592518 161592727 -1007203 + MER58C DNA MER1_type 1 215 0 2317 90 0 26 chrX 161594110 161594421 -1005509 + AluSx SINE Alu 1 303 -9 501 269 110 102 chrX 161595539 161596222 -1003708 - L1M2 LINE L1 -5582 1267 580 568 241 0 0 chrX 161596419 161596560 -1003370 - L1M4 LINE L1 -1055 5091 4951 3046 78 0 0 chrX 161596561 161596933 -1002997 - L1PA5 LINE L1 -3 6151 5780 16397 44 1 1 chrX 161597033 161599037 -1000893 + L1P LINE L1 3081 5085 -1061 4443 30 6 0 chrX 161599137 161599676 -1000254 - L1P LINE L1 -3231 2915 2374 2054 208 26 26 chrX 161599660 161600155 -999775 - L1M4 LINE L1 -2227 3919 3425 * 295 291 27 27 chrX 161600370 161600480 -999450 - L1MEc LINE L1 -4777 1619 1510 1110 194 66 78 chrX 161600501 161600836 -999094 + MLT1D LTR MaLR 5 335 -170 19125 89 17 33 chrX 161600936 161603815 -996115 - L1P LINE L1 -1378 4768 1937 2514 161 28 0 chrX 161603915 161604375 -995555 - L1 LINE L1 -1548 4598 4126 560 137 0 0 chrX 161604382 161604477 -995453 - L1 LINE L1 -1644 4502 4408 225 0 0 0 chrX 161604573 161604598 -995332 + (TG)n Simple_repeat Simple_repeat 2 26 0 390 200 38 0 chrX 161604658 161604738 -995192 + L1PA16 LINE L1 6081 6163 -3 809 282 347 23 chrX 161606494 161607140 -992790 + L2 LINE L2 646 1500 -1814 1748 192 158 22 chrX 161607381 161607792 -992138 - MLT1C LTR MaLR 0 467 1 216 86 0 0 chrX 161607995 161608030 -991900 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3307 252 122 44 chrX 161608031 161609059 -990871 + L2 LINE L2 1712 2879 -434 339 25 0 0 chrX 161609059 161609099 -990831 + (TC)n Simple_repeat Simple_repeat 2 41 0 3307 252 122 44 chrX 161609099 161609378 -990552 + L2 LINE L2 2879 3135 -178 376 294 0 22 chrX 161609382 161609518 -990412 - MER94 DNA DNA 0 134 2 290 242 44 11 chrX 161609519 161609610 -990320 + L2 LINE L2 3132 3225 -88 21 0 0 0 chrX 161610259 161610280 -989650 + GC_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chrX 161611159 161611192 -988738 + AT_rich Low_complexity Low_complexity 1 33 0 563 278 21 36 chrX 161611538 161611732 -988198 - MIR SINE MIR -69 193 3 209 254 0 48 chrX 161611772 161611835 -988095 + L2 LINE L2 3205 3264 -8 461 294 98 6 chrX 161612069 161612232 -987698 + MIR SINE MIR 6 183 -79 683 181 186 21 chrX 161612533 161612721 -987209 - MIR SINE MIR -30 232 14 1543 138 21 38 chrX 161613634 161613874 -986056 + MER46A DNA MER2_type 1 236 0 282 210 0 0 chrX 161614179 161614241 -985689 - L1ME2 LINE L1 0 6164 6103 * 629 165 0 0 chrX 161614237 161614334 -985596 - L1ME LINE L1 -593 5573 5477 234 315 38 121 chrX 161614648 161614733 -985197 - L2 LINE L2 -13 3259 3169 1607 157 0 72 chrX 161614733 161614873 -985057 + AluJo SINE Alu 1 107 -205 2064 118 3 7 chrX 161614873 161615161 -984769 + AluSx SINE Alu 1 287 -25 1607 157 0 72 chrX 161615161 161615338 -984592 + AluJo SINE Alu 107 295 -17 234 315 38 121 chrX 161615338 161615617 -984313 - L2 LINE L2 -103 3169 2925 525 201 176 21 chrX 161615703 161615942 -983988 + L1ME4a LINE L1 5843 6118 -3 188 236 34 124 chrX 161615962 161616026 -983904 - L2 LINE L2 -1106 2208 2153 1490 185 30 16 chrX 161616026 161616329 -983601 + AluJb SINE Alu 1 307 -5 188 236 34 124 chrX 161616329 161616353 -983577 - L2 LINE L2 -1161 2153 2128 822 169 0 0 chrX 161616680 161616804 -983126 - AluJb SINE Alu -23 289 166 10470 51 7 53 chrX 161617024 161618453 -981477 - SVA Other Other 0 1386 24 350 304 138 36 chrX 161618565 161618790 -981140 - L1MEd LINE L1 -1168 1322 983 1772 111 0 24 chrX 161619076 161619329 -980601 - AluSx SINE Alu -65 247 1 482 249 33 28 chrX 161620189 161620370 -979560 - L1MEd LINE L1 -4989 1130 949 1666 175 54 16 chrX 161620382 161620961 -978969 - L1 LINE L1 -1391 2400 940 443 291 31 0 chrX 161620972 161621168 -978762 - L1M4 LINE L1 -748 5398 5197 1158 233 8 8 chrX 161621531 161621789 -978141 + MIR SINE MIR 1 258 -4 249 33 0 0 chrX 161621789 161621819 -978111 + (ATG)n Simple_repeat Simple_repeat 1 30 0 209 268 0 36 chrX 161622063 161622119 -977811 - MER5A DNA MER1_type -75 114 61 24259 130 15 18 chrX 161622132 161625990 -973940 - L1PA10 LINE L1 0 6483 2653 2539 80 0 0 chrX 161625990 161626301 -973629 + AluY SINE Alu 1 311 0 24259 130 15 18 chrX 161626301 161627340 -972590 - L1PA10 LINE L1 -3830 2653 1612 4006 110 65 57 chrX 161627340 161628411 -971519 - MER11A LTR ERVK 0 1071 1 3884 199 10 67 chrX 161628411 161629353 -970577 - L1PA10 LINE L1 -4835 1626 739 589 108 0 0 chrX 161629353 161629427 -970503 + AluS SINE Alu 2 75 -238 45635 34 1 1 chrX 161630124 161636270 -963660 + L1PA3 LINE L1 9 6155 0 2225 106 0 0 chrX 161636658 161636950 -962980 - AluSx SINE Alu -20 292 1 1387 248 198 8 chrX 161637813 161638318 -961612 + L2 LINE L2 2319 2919 -395 512 274 15 0 chrX 161638351 161638486 -961444 + L2 LINE L2 1816 1952 -1362 643 235 178 54 chrX 161638512 161638736 -961194 - L2 LINE L2 -46 3267 3072 2437 74 0 3 chrX 161638736 161639032 -960898 - AluY SINE Alu -16 295 1 643 235 178 54 chrX 161639032 161639265 -960665 - L2 LINE L2 -241 3072 2044 236 375 48 0 chrX 161639261 161639365 -960565 + L2 LINE L2 1998 2106 -1208 * 703 320 98 33 chrX 161640181 161640547 -959383 - L3 LINE CR1 -701 876 487 192 260 147 40 chrX 161640546 161640696 -959234 - L2 LINE L2 -445 2869 2704 * 25 0 0 0 chrX 161641251 161641276 -958654 + AT_rich Low_complexity Low_complexity 1 25 0 180 308 17 67 chrX 161641636 161641756 -958174 + L2 LINE L2 1182 1295 -2019 215 359 51 34 chrX 161641791 161641908 -958022 - L2 LINE L2 -201 3071 2953 24 91 0 0 chrX 161642307 161642373 -957557 + AT_rich Low_complexity Low_complexity 1 66 0 1863 141 3 30 chrX 161642663 161642962 -956968 + AluJo SINE Alu 1 291 -21 230 234 106 21 chrX 161643496 161643590 -956340 - MIR3 SINE MIR -18 190 89 184 309 73 0 chrX 161643797 161643852 -956078 + L2 LINE L2 3244 3302 -11 519 298 119 38 chrX 161644428 161644663 -955267 - MIR SINE MIR -1 261 8 526 277 32 7 chrX 161645028 161645183 -954747 - MIR3 SINE MIR -3 205 47 2899 182 98 49 chrX 161646156 161647041 -952889 - MER63C DNA MER1_type 0 930 2 1087 210 8 8 chrX 161647437 161647685 -952245 - L1 LINE L1 -2452 3694 3447 2249 91 0 7 chrX 161647697 161647982 -951948 - AluSq SINE Alu -26 287 5 3184 50 16 0 chrX 161647986 161648368 -951562 - HERVL LTR ERVL -730 4924 4537 347 125 16 16 chrX 161648468 161648532 -951398 - L1P LINE L1 -2052 4094 4031 274 232 62 45 chrX 161648609 161648721 -951209 + L1ME LINE L1 5384 5497 -669 2406 15 0 0 chrX 161649405 161649702 -950228 + AluY SINE Alu 21 317 0 14226 186 42 7 chrX 161650327 161653756 -946174 + L1M1 LINE L1 2690 6238 -767 1874 166 0 3 chrX 161653856 161654146 -945784 - AluJb SINE Alu -22 290 2 1290 183 137 30 chrX 161654769 161655032 -944898 - L1M LINE L1 -832 5314 5013 1697 77 68 0 chrX 161655032 161655280 -944650 + L1PA8 LINE L1 5905 6169 -3 1290 183 137 30 chrX 161655280 161655458 -944472 - L1M LINE L1 -1133 5013 4855 259 327 18 9 chrX 161655487 161655597 -944333 + L1ME LINE L1 586 696 -5938 461 163 38 121 chrX 161655924 161656073 -943857 + L1ME LINE L1 1029 1225 -5422 440 300 187 4 chrX 161656094 161656351 -943579 + L1ME LINE L1 3632 3935 -2709 969 121 0 0 chrX 161656368 161656508 -943422 - FLAM_C SINE Alu -3 140 1 448 271 28 19 chrX 161656570 161656677 -943253 - MLT1I LTR MaLR -93 316 209 281 250 50 89 chrX 161656851 161657031 -942899 + L1P LINE L1 3510 3682 -2464 1245 266 128 31 chrX 161657318 161658220 -941710 + L1ME LINE L1 4212 5200 -1444 328 312 60 32 chrX 161658225 161658475 -941455 + L1ME LINE L1 5233 5489 -1155 404 233 181 16 chrX 161658954 161659147 -940783 + L1ME LINE L1 6079 6303 -316 528 271 31 0 chrX 161659202 161659331 -940599 - MLT1L LTR MaLR -72 543 411 243 316 51 13 chrX 161659354 161659433 -940497 - L2 LINE L2 -36 3236 3155 773 228 123 9 chrX 161659551 161659770 -940160 - MIR SINE MIR -15 247 4 818 257 59 52 chrX 161660176 161660464 -939466 - L2 LINE L2 -475 2839 2550 222 91 0 0 chrX 161660467 161660500 -939430 + (CA)n Simple_repeat Simple_repeat 2 34 0 911 160 148 0 chrX 161660502 161660700 -939230 - AluJo SINE Alu 0 311 89 714 299 95 28 chrX 161660707 161661095 -938835 - L2 LINE L2 -776 2538 2125 206 311 84 42 chrX 161661139 161661329 -938601 + L2 LINE L2 1864 2061 -1253 319 291 29 10 chrX 161661617 161661720 -938210 + L3 LINE CR1 1158 1262 -315 286 204 172 11 chrX 161663549 161663642 -936288 + MIR SINE MIR 86 193 -69 21 57 0 0 chrX 161665101 161665136 -934794 + AT_rich Low_complexity Low_complexity 1 35 0 299 24 0 24 chrX 161665595 161665636 -934294 + (TTA)n Simple_repeat Simple_repeat 1 40 0 241 375 162 13 chrX 161666120 161666355 -933575 + L3 LINE CR1 36 305 -1272 288 236 155 22 chrX 161666434 161666636 -933294 + L1M4 LINE L1 5195 5421 -752 193 282 0 126 chrX 161667091 161667194 -932736 - L2 LINE L2 0 3272 3183 281 278 22 0 chrX 161667291 161667381 -932549 + L2 LINE L2 3180 3271 -1 363 290 47 38 chrX 161668763 161669106 -930824 - L1MC/D LINE L1 -541 5621 5316 2491 63 0 0 chrX 161669113 161669414 -930516 - AluY SINE Alu -10 301 1 613 148 0 47 chrX 161669460 161669609 -930321 - L1MB8 LINE L1 -9 6169 6028 1114 36 0 78 chrX 161669612 161669778 -930152 + L1PA5 LINE L1 5993 6145 -9 2789 199 23 7 chrX 161669798 161670976 -928954 - L1MB5 LINE L1 -134 6109 4881 2190 200 43 22 chrX 161671096 161671632 -928298 - L1MB5 LINE L1 -1341 4874 4328 207 0 0 0 chrX 161671632 161671655 -928275 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5233 56 0 0 chrX 161671662 161672305 -927625 - L1PA7 LINE L1 -22 6132 5490 1080 128 0 0 chrX 161672305 161672461 -927469 - AluSg/x SINE Alu -10 302 147 736 22 0 0 chrX 161672461 161672550 -927380 - L1P3 LINE L1 -681 5491 5403 563 42 0 0 chrX 161672549 161672621 -927309 + L1P LINE L1 4598 4669 -1477 * 2295 232 45 125 chrX 161672616 161674067 -925863 - L1MB5 LINE L1 -2907 3308 2140 2273 114 0 0 chrX 161674067 161674365 -925565 - AluSx SINE Alu -12 300 3 2295 232 45 125 chrX 161674365 161675025 -924905 - L1MB5 LINE L1 -4075 2140 1429 * 5806 153 23 4 chrX 161675014 161676855 -923075 - L1MA3 LINE L1 0 6305 4426 204 40 0 0 chrX 161676856 161676881 -923049 + (TA)n Simple_repeat Simple_repeat 1 25 0 2430 116 8 8 chrX 161676883 161677246 -922684 + L1PB3 LINE L1 5790 6152 -2 3054 127 21 18 chrX 161677262 161677429 -922501 + L1P4 LINE L1 5195 5360 -806 2111 118 0 3 chrX 161677429 161677717 -922213 + AluSg SINE Alu 1 287 -23 3054 127 21 18 chrX 161677717 161678123 -921807 + L1P4 LINE L1 5360 5775 -391 406 202 48 32 chrX 161678121 161678245 -921685 - L1MC3 LINE L1 -704 7081 6956 * 238 291 0 0 chrX 161678245 161678300 -921630 + Tigger5 DNA MER2_type 1 55 -2268 * 346 192 14 14 chrX 161678269 161678342 -921588 + Tigger5 DNA MER2_type 2251 2323 0 231 100 75 0 chrX 161678342 161678382 -921548 + Tigger5 DNA MER2_type 13 55 -2268 * 508 202 39 0 chrX 161678374 161678478 -921452 + Tigger5 DNA MER2_type 2215 2322 -1 2481 213 75 20 chrX 161678479 161679122 -920808 - L1MC3 LINE L1 -832 6953 6276 276 326 73 5 chrX 161679246 161679629 -920301 - L1M4 LINE L1 -2665 3481 3073 496 157 10 10 chrX 161679671 161679773 -920157 - L1MB2 LINE L1 0 6171 6070 230 309 28 28 chrX 161679809 161679990 -919940 - L1M4 LINE L1 -3092 3054 2874 22 0 0 0 chrX 161679990 161680012 -919918 + AT_rich Low_complexity Low_complexity 1 22 0 2049 154 28 74 chrX 161680015 161680471 -919459 - L1MA6 LINE L1 -9 6291 5860 438 184 101 14 chrX 161680578 161680734 -919196 + LTR65 LTR ERV1 344 550 -119 23 33 0 0 chrX 161682216 161682246 -917684 + AT_rich Low_complexity Low_complexity 1 30 0 436 266 9 0 chrX 161682257 161682370 -917560 - MIR SINE MIR -2 260 147 2120 126 7 3 chrX 161682424 161682725 -917205 + AluJb SINE Alu 1 302 -10 2358 95 7 0 chrX 161684184 161684490 -915440 + AluSq SINE Alu 1 308 -5 229 244 33 0 chrX 161684554 161684644 -915286 + L1M4 LINE L1 3839 3931 -2215 * 2846 170 55 2 chrX 161684643 161684764 -915166 + L1MA9 LINE L1 5662 5775 -537 222 37 0 0 chrX 161684764 161684791 -915139 + (TA)n Simple_repeat Simple_repeat 1 27 0 2846 170 55 2 chrX 161684791 161685251 -914679 + L1MA9 LINE L1 5775 6274 -38 1172 249 98 18 chrX 161685313 161685702 -914228 + L2 LINE L2 2435 2854 -460 654 293 94 18 chrX 161685704 161686104 -913826 + L2 LINE L2 2709 3130 -183 1140 238 165 56 chrX 161686104 161686849 -913081 + L1M3e LINE L1 176 1001 -6029 596 194 7 22 chrX 161686885 161687024 -912906 + L1M3e LINE L1 3629 3765 -3341 421 186 12 12 chrX 161687018 161687104 -912826 - L1 LINE L1 -2049 4097 4012 * 1776 49 113 0 chrX 161687206 161687453 -912477 - L1PA5 LINE L1 -2 6152 5878 2274 249 55 72 chrX 161687453 161688029 -911901 - L1M4 LINE L1 -5454 1088 537 2452 62 3 20 chrX 161688029 161688333 -911597 - AluSp SINE Alu -14 299 1 2274 249 55 72 chrX 161688333 161688855 -911075 - L1M4 LINE L1 -6005 537 8 308 260 77 82 chrX 161689389 161689585 -910345 + MLT1J LTR MaLR 243 437 -74 764 78 0 0 chrX 161689618 161689734 -910196 - LTR9B LTR ERV1 -84 560 445 5704 105 28 4 chrX 161689766 161691098 -908832 - L1PA14 LINE L1 -13 6148 4774 2118 133 0 0 chrX 161691098 161691392 -908538 - AluSx SINE Alu 0 312 19 5704 105 28 4 chrX 161691392 161691948 -907982 - L1PA14 LINE L1 -1387 4774 4233 2306 88 3 0 chrX 161692639 161692935 -906995 + AluSp SINE Alu 1 297 -16 1257 150 5 0 chrX 161695200 161695413 -904517 - L1PA14 LINE L1 -1902 4244 4031 275 261 33 21 chrX 161695433 161695601 -904329 + L1ME LINE L1 5332 5500 -664 3130 141 9 5 chrX 161695971 161696537 -903393 + L1MA4A LINE L1 5556 6123 -180 295 279 0 0 chrX 161696540 161696619 -903311 + L1MA4A LINE L1 6189 6267 -36 2104 88 3 61 chrX 161696659 161696988 -902942 + AluY SINE Alu 1 310 -1 1289 228 10 60 chrX 161697000 161697386 -902544 + MLT1E3 LTR MaLR 258 624 0 318 350 32 0 chrX 161698454 161698674 -901256 - L1MC/D LINE L1 -2015 5793 5567 40752 34 22 1 chrX 161698674 161704700 -895230 - L1PA2 LINE L1 0 6155 1 331 318 61 0 chrX 161704726 161704874 -895056 - L1MC/D LINE L1 -756 5390 5234 2459 167 19 2 chrX 161705201 161705620 -894310 + MSTB LTR MaLR 1 426 0 2189 159 60 27 chrX 161705624 161706038 -893892 - MSTA LTR MaLR 0 428 1 200 118 29 0 chrX 161706177 161706211 -893719 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 632 296 25 20 chrX 161706340 161706543 -893387 - L2 LINE L2 -218 3054 2851 15229 88 40 0 chrX 161706706 161709902 -890028 + L1PA8 LINE L1 2996 6170 -2 414 0 0 0 chrX 161709906 161709952 -889978 + (TA)n Simple_repeat Simple_repeat 2 47 0 2582 93 11 13 chrX 161709952 161710315 -889615 + L1PB1 LINE L1 5774 6143 -8 238 177 0 63 chrX 161710341 161710420 -889510 + L1MA9 LINE L1 6239 6312 0 * 4209 176 54 11 chrX 161710391 161711314 -888616 + L1MD1 LINE L1 5280 6242 0 296 87 0 0 chrX 161711424 161711470 -888460 - MADE1 DNA Mariner -34 46 1 922 136 0 0 chrX 161711650 161711797 -888133 + L1PA13 LINE L1 5813 5959 -204 910 68 38 0 chrX 161711802 161711934 -887996 + L1PA13 LINE L1 6026 6162 -1 7602 158 36 3 chrX 161711940 161713567 -886363 + L1M1 LINE L1 3776 5461 -743 816 174 19 38 chrX 161713685 161713730 -886200 - L1 LINE L1 -743 5403 5359 2089 122 0 3 chrX 161713730 161714018 -885912 - AluSg SINE Alu -23 287 1 816 174 19 38 chrX 161714018 161714185 -885745 - L1 LINE L1 -787 5359 5195 2422 116 8 8 chrX 161714201 161714564 -885366 - L1PB3 LINE L1 -2 6152 5790 204 40 0 0 chrX 161714566 161714591 -885339 + (TA)n Simple_repeat Simple_repeat 2 26 0 5483 152 23 4 chrX 161714592 161716433 -883497 + L1MA3 LINE L1 4426 6305 0 1536 225 53 105 chrX 161716422 161717083 -882847 + L1MEc LINE L1 1429 1900 -4315 * 2262 114 0 0 chrX 161717083 161717380 -882550 + AluSx SINE Alu 3 299 -13 1536 225 53 105 chrX 161717380 161718163 -881767 + L1MEc LINE L1 1900 2722 -3493 383 40 101 0 chrX 161718164 161718263 -881667 + (TA)n Simple_repeat Simple_repeat 2 110 0 2033 206 16 14 chrX 161718263 161718835 -881095 + L1MEc LINE L1 2736 3308 -2907 538 42 0 0 chrX 161718830 161718902 -881028 - L1P LINE L1 -1477 4669 4598 * 705 22 0 0 chrX 161718901 161718990 -880940 + L1P3 LINE L1 5403 5491 -663 1030 132 0 0 chrX 161718990 161719134 -880796 + AluSg/x SINE Alu 147 290 -22 7103 113 38 2 chrX 161719175 161720374 -879556 + L1M1 LINE L1 1983 3225 -4340 1234 149 0 20 chrX 161720374 161720575 -879355 + AluJb SINE Alu 105 301 -11 571 195 40 7 chrX 161720576 161720725 -879205 + L1MEc LINE L1 3638 3791 -2424 1990 130 54 65 chrX 161720726 161721094 -878836 - THE1B LTR MaLR 0 364 1 2871 85 0 10 chrX 161721094 161721493 -878437 - THE1B-int LTR MaLR 0 1580 1186 8538 89 7 0 chrX 161721736 161722919 -877011 - THE1B-int LTR MaLR -389 1191 1 2243 127 30 30 chrX 161722919 161723281 -876649 - THE1B LTR MaLR 0 364 3 355 143 0 0 chrX 161723290 161723353 -876577 + L1MEc LINE L1 3795 3857 -2358 * 3832 171 0 1 chrX 161723339 161724069 -875861 - L1PA13 LINE L1 -918 5228 4500 3241 121 26 12 chrX 161724083 161724311 -875619 + L1PA13 LINE L1 5254 5477 -686 637 139 0 119 chrX 161724311 161724462 -875468 + FLAM_C SINE Alu 1 133 0 3241 121 26 12 chrX 161724462 161724803 -875127 + L1PA13 LINE L1 5477 5831 -332 972 166 15 0 chrX 161724804 161725003 -874927 + L1MA2 LINE L1 3 204 -6659 * 9445 167 29 16 chrX 161724999 161727863 -872067 + L1MA2 LINE L1 634 3737 -3125 3274 76 7 16 chrX 161727863 161728309 -871621 - MLT2A1 LTR ERVL 0 444 3 9445 167 29 16 chrX 161728309 161730504 -869426 + L1MA2 LINE L1 3737 5901 -961 26895 94 10 74 chrX 161730515 161735368 -864562 + L1P LINE L1 12 4552 -1594 5007 105 12 8 chrX 161735472 161736242 -863688 + L1MA2 LINE L1 6248 7020 0 1112 203 68 0 chrX 161736245 161736541 -863389 + L1ME LINE L1 5298 5613 -551 862 226 20 5 chrX 161736587 161736791 -863139 - L2 LINE L2 -2463 851 645 639 228 96 30 chrX 161737408 161737623 -862307 - MIR SINE MIR 0 262 37 536 196 327 13 chrX 161738450 161738603 -861327 + MIR SINE MIR 56 256 -6 248 260 13 66 chrX 161739141 161739235 -860695 + MIR SINE MIR 70 157 -60 207 200 0 0 chrX 161739270 161739310 -860620 + (CTA)n Simple_repeat Simple_repeat 1 40 0 324 205 77 0 chrX 161739322 161739400 -860530 + MIR SINE MIR 147 230 -32 400 320 16 0 chrX 161739874 161739996 -859934 - MIR3 SINE MIR -3 205 82 222 274 95 0 chrX 161741727 161741822 -858108 - L2 LINE L2 -886 2428 2325 27 29 0 0 chrX 161741952 161741986 -857944 + AT_rich Low_complexity Low_complexity 1 34 0 828 194 90 18 chrX 161742163 161742385 -857545 - L1MB8 LINE L1 -23 6155 5918 1867 145 76 20 chrX 161742386 161742730 -857200 - MSTB LTR MaLR 0 426 64 2029 159 28 3 chrX 161742822 161743175 -856755 - L1PB4 LINE L1 -13 6143 5782 2089 158 49 55 chrX 161743184 161743561 -856369 - L1PB4 LINE L1 -504 5652 5286 210 91 0 0 chrX 161743561 161743594 -856336 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2089 158 49 55 chrX 161743594 161743879 -856051 - L1PB4 LINE L1 -870 5286 5001 185 347 69 14 chrX 161743979 161744123 -855807 + L2 LINE L2 2070 2221 -1093 246 257 0 49 chrX 161744214 161744358 -855572 + T-rich Low_complexity Low_complexity 2 138 0 326 337 94 67 chrX 161744460 161744866 -855064 + L2 LINE L2 2339 2755 -559 303 309 45 124 chrX 161744916 161745230 -854700 + L2 LINE L2 2934 3222 -50 180 175 50 0 chrX 161745216 161745256 -854674 + MIR SINE MIR 217 258 -4 * 728 324 106 34 chrX 161746007 161746603 -853327 + L2 LINE L2 2233 2871 -443 702 267 21 25 chrX 161746729 161746969 -852961 - L2 LINE L2 0 3313 3075 351 301 118 13 chrX 161746998 161747151 -852779 + MIR SINE MIR 20 188 -74 331 266 52 95 chrX 161747311 161747563 -852367 - L1MC4 LINE L1 -1 8041 7801 567 217 39 23 chrX 161747565 161748048 -851882 - L1ME2 LINE L1 -1 6163 5511 701 187 14 7 chrX 161748049 161748188 -851742 - MSTB LTR MaLR -223 203 64 2029 159 28 3 chrX 161748280 161748633 -851297 - L1PB4 LINE L1 -13 6143 5782 6145 209 48 21 chrX 161748642 161749019 -850911 - L1PB4 LINE L1 -504 5652 5287 210 91 0 0 chrX 161749019 161749052 -850878 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6145 209 48 21 chrX 161749052 161750154 -849776 - L1PB4 LINE L1 -869 5287 4217 258 32 0 0 chrX 161750154 161750185 -849745 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 300 111 0 0 chrX 161750184 161750229 -849701 + (TG)n Simple_repeat Simple_repeat 2 46 0 6145 209 48 21 chrX 161750185 161750922 -849008 - L1PB4 LINE L1 -1939 4217 3427 1364 116 12 33 chrX 161750981 161751255 -848675 - L1MA6 LINE L1 -90 6212 5938 4351 124 27 31 chrX 161751279 161751456 -848474 - L1MA2 LINE L1 -5 6299 6123 8728 25 6 0 chrX 161751456 161753261 -846669 - L1PA4 LINE L1 -3 6152 4342 4351 124 27 31 chrX 161753261 161753690 -846240 - L1MA2 LINE L1 -181 6123 5694 2381 222 9 40 chrX 161753690 161754262 -845668 - MLT2B3 LTR ERVL 0 554 1 4351 124 27 31 chrX 161754262 161754469 -845461 - L1MA2 LINE L1 -610 5694 5488 26 30 0 0 chrX 161754768 161754801 -845129 + AT_rich Low_complexity Low_complexity 1 33 0 1518 166 21 0 chrX 161754805 161755088 -844842 - L1MA3 LINE L1 0 6305 6017 1156 141 40 0 chrX 161755092 161755390 -844540 - L1MA2 LINE L1 -743 5403 5183 4706 131 21 20 chrX 161755394 161756618 -843312 - L1MA8 LINE L1 -161 6130 4903 435 169 0 0 chrX 161756616 161756693 -843237 - L1MA3 LINE L1 -767 5536 5460 * 739 204 42 11 chrX 161756705 161756896 -843034 - L1MA3 LINE L1 -927 5219 5023 263 287 44 73 chrX 161757368 161757504 -842426 + MIR SINE MIR 81 212 -50 249 300 169 0 chrX 161757645 161757775 -842155 + MIR SINE MIR 47 198 -64 2308 79 0 58 chrX 161757931 161758261 -841669 - AluSx SINE Alu -1 311 1 219 269 0 77 chrX 161758269 161758347 -841583 - MIR SINE MIR -72 190 119 2350 199 49 24 chrX 161758437 161759024 -840906 + L1ME3A LINE L1 5566 6167 -3 1361 291 27 32 chrX 161759060 161759639 -840291 + L2 LINE L2 2735 3311 -2 475 341 0 12 chrX 161760346 161760513 -839417 + MIR3 SINE MIR 37 201 -7 593 219 15 0 chrX 161761466 161761603 -838327 - Charlie1 DNA MER1_type 0 2761 2623 515 212 8 23 chrX 161761610 161761742 -838188 - Charlie1 DNA MER1_type -2541 220 91 483 202 0 30 chrX 161761833 161761932 -837998 - Charlie1 DNA MER1_type -2661 100 5 230 313 0 0 chrX 161763505 161763569 -836361 + L2 LINE L2 3250 3313 0 283 231 198 0 chrX 161763675 161763766 -836164 + MER81 DNA DNA 1 109 -5 851 222 22 11 chrX 161763910 161764095 -835835 + MER5A DNA MER1_type 3 189 0 522 312 13 6 chrX 161764102 161764265 -835665 + MIR3 SINE MIR 36 201 -7 372 263 68 25 chrX 161764235 161764353 -835577 + MIR SINE MIR 63 185 -77 * 390 249 373 5 chrX 161764389 161764574 -835356 - MIR SINE MIR -1 261 9 4155 128 8 0 chrX 161764760 161765408 -834522 + L1PA13 LINE L1 1 653 -6928 22227 168 11 13 chrX 161765421 161771237 -828693 + L1PA13 LINE L1 988 7601 0 1929 133 0 35 chrX 161771298 161771613 -828317 + AluJo SINE Alu 1 304 -8 205 29 29 29 chrX 161772110 161772145 -827785 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 479 285 87 44 chrX 161772771 161773023 -826907 + MIR SINE MIR 3 262 0 1646 250 72 55 chrX 161773554 161774189 -825741 + HAL1 LINE L1 120 765 -1742 269 319 20 43 chrX 161774219 161774473 -825457 - L2 LINE L2 -1594 1720 1473 485 256 44 15 chrX 161774544 161774681 -825249 - L2 LINE L2 0 3272 3132 340 338 0 78 chrX 161775176 161775395 -824535 + MIR SINE MIR 17 218 -44 266 0 0 29 chrX 161775474 161775509 -824421 + (CCCTAA)n Simple_repeat Simple_repeat 5 38 0 413 332 102 20 chrX 161775728 161775924 -824006 - L2 LINE L2 -1 3271 3060 303 222 177 12 chrX 161775946 161776079 -823851 - MIR3 SINE MIR -51 157 3 28 0 0 0 chrX 161776242 161776270 -823660 + AT_rich Low_complexity Low_complexity 1 28 0 230 380 0 0 chrX 161776327 161776406 -823524 + (TG)n Simple_repeat Simple_repeat 1 79 0 383 203 0 13 chrX 161776736 161776815 -823115 + L1MEd LINE L1 4 81 -6038 199 186 23 23 chrX 161776902 161776945 -822985 + MIR3 SINE MIR 138 180 -28 298 267 60 60 chrX 161776982 161777098 -822832 - L2 LINE L2 0 3272 3157 306 271 28 47 chrX 161777107 161777214 -822716 - MER5B DNA MER1_type 0 178 74 583 283 57 44 chrX 161777436 161777733 -822197 - L2 LINE L2 -753 2561 2261 1566 257 101 60 chrX 161778339 161779456 -820474 + L1MEd LINE L1 4 1236 -4883 373 313 53 80 chrX 161779462 161779727 -820203 + L1MEd LINE L1 1299 1549 -4761 1506 153 0 133 chrX 161779727 161779948 -819982 - AluSx SINE Alu -12 300 140 180 0 0 0 chrX 161779948 161779968 -819962 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1506 153 0 133 chrX 161779968 161780092 -819838 - AluSx SINE Alu -172 140 1 373 313 53 80 chrX 161780092 161780276 -819654 + L1MEd LINE L1 1549 1736 -4574 268 259 36 27 chrX 161780558 161780670 -819260 - MER87 LTR ERV1 0 541 429 24 32 0 0 chrX 161781096 161781127 -818803 + AT_rich Low_complexity Low_complexity 1 31 0 211 200 12 24 chrX 161781133 161781218 -818712 + GA-rich Low_complexity Low_complexity 5 88 0 530 217 23 0 chrX 161781236 161781503 -818427 + (TA)n Simple_repeat Simple_repeat 1 273 0 302 294 11 11 chrX 161781503 161781595 -818335 - L1MC4 LINE L1 -1339 6703 6612 464 234 6 0 chrX 161781596 161781763 -818167 + (TA)n Simple_repeat Simple_repeat 2 169 0 684 200 0 0 chrX 161781897 161782133 -817797 + (TA)n Simple_repeat Simple_repeat 1 236 0 309 322 0 0 chrX 161782155 161782245 -817685 + L1MC4 LINE L1 6614 6703 -1339 * 336 239 22 22 chrX 161782199 161782291 -817639 - L1MC4 LINE L1 -1339 6703 6612 378 110 30 30 chrX 161782301 161782401 -817529 + (TA)n Simple_repeat Simple_repeat 1 100 0 495 207 17 23 chrX 161782931 161783105 -816825 + GA-rich Low_complexity Low_complexity 4 176 0 22 0 0 0 chrX 161783269 161783291 -816639 + AT_rich Low_complexity Low_complexity 1 22 0 569 312 17 21 chrX 161783438 161783672 -816258 + HAL1b LINE L1 129 361 -987 242 323 55 11 chrX 161783812 161783975 -815955 + L1MDa LINE L1 21 622 -5908 2233 174 41 31 chrX 161784737 161785247 -814683 + L1MDa LINE L1 1470 1984 -4556 607 300 76 63 chrX 161785412 161785952 -813978 + L2 LINE L2 1843 2389 -925 339 280 84 92 chrX 161786013 161786198 -813732 + L2 LINE L2 2906 3088 -184 2904 118 14 21 chrX 161786198 161786630 -813300 - MSTB1 LTR MaLR -2 430 2 339 280 84 92 chrX 161786630 161786812 -813118 + L2 LINE L2 3088 3270 -2 447 332 33 63 chrX 161786890 161787285 -812645 + L2 LINE L2 2522 2904 -410 466 227 0 0 chrX 161787405 161787493 -812437 + L1MB5 LINE L1 3782 3869 -2277 5477 211 29 44 chrX 161787494 161787947 -811983 + L1MB5 LINE L1 3823 4281 -1893 2086 132 124 46 chrX 161787947 161788342 -811588 + MSTA LTR MaLR 1 426 -2 5477 211 29 44 chrX 161788342 161789477 -810453 + L1MB5 LINE L1 4281 5368 -806 730 223 181 71 chrX 161789477 161789814 -810116 - MLT1A2 LTR MaLR 0 374 1 5477 211 29 44 chrX 161789814 161790444 -809486 + L1MB5 LINE L1 5368 6006 -168 398 206 7 66 chrX 161790473 161790609 -809321 + L1MB5 LINE L1 5970 6097 -77 22 0 0 0 chrX 161791930 161791952 -807978 + GC_rich Low_complexity Low_complexity 1 22 0 1330 238 165 55 chrX 161792729 161793473 -806457 - L1M3e LINE L1 -6029 1001 176 565 293 97 26 chrX 161793473 161793874 -806056 - L2 LINE L2 -183 3130 2709 1107 249 109 18 chrX 161793876 161794261 -805669 - L2 LINE L2 -460 2854 2435 3194 161 55 2 chrX 161794323 161794783 -805147 - L1MA9 LINE L1 -38 6274 5775 222 37 0 0 chrX 161794783 161794810 -805120 + (TA)n Simple_repeat Simple_repeat 2 28 0 3194 161 55 2 chrX 161794810 161794931 -804999 - L1MA9 LINE L1 -537 5775 5662 275 238 57 9 chrX 161794915 161795020 -804910 - L1M4 LINE L1 -2198 3948 3839 * 2225 106 3 19 chrX 161795084 161795396 -804534 - AluSx SINE Alu -5 307 1 28 48 0 0 chrX 161796568 161796610 -803320 + AT_rich Low_complexity Low_complexity 1 42 0 53 81 0 0 chrX 161796757 161796880 -803050 + AT_rich Low_complexity Low_complexity 1 123 0 400 294 78 20 chrX 161797465 161797618 -802312 - MIR3 SINE MIR -23 185 24 592 299 50 27 chrX 161797835 161798056 -801874 - MIR SINE MIR -29 233 8 611 241 25 20 chrX 161798576 161798775 -801155 - HAL1b LINE L1 -261 1087 888 371 293 40 45 chrX 161799123 161799321 -800609 - HAL1b LINE L1 -1052 296 100 229 300 0 25 chrX 161799400 161799520 -800410 + T-rich Low_complexity Low_complexity 2 118 0 1771 285 47 30 chrX 161799528 161799799 -800131 + L2 LINE L2 2356 2621 -693 1532 198 71 69 chrX 161799799 161800263 -799667 - MLT1C LTR MaLR -2 465 1 1771 285 47 30 chrX 161800263 161800472 -799458 + L2 LINE L2 2621 2850 -464 2012 148 20 0 chrX 161800472 161800770 -799160 - AluSx SINE Alu -8 304 1 1771 285 47 30 chrX 161800770 161800884 -799046 + L2 LINE L2 2850 2961 -353 592 265 110 33 chrX 161800885 161801130 -798800 + L2 LINE L2 2681 2944 -370 230 191 0 43 chrX 161801294 161801341 -798589 + L2 LINE L2 3226 3270 -2 573 259 164 48 chrX 161801558 161802176 -797754 - L1MC4a LINE L1 -817 5329 5133 1635 256 61 39 chrX 161802292 161802859 -797071 + L1ME3A LINE L1 5298 5884 -286 2090 222 121 24 chrX 161802860 161803414 -796516 - MLT1E2 LTR MaLR -18 608 1 1126 194 53 32 chrX 161803414 161803697 -796233 + L1ME3A LINE L1 5882 6170 0 240 154 0 0 chrX 161803742 161803781 -796149 - MLT2F LTR ERVL -7 656 618 253 243 112 47 chrX 161803833 161803903 -796027 - L1MC4a LINE L1 -1219 6589 6508 1698 194 3 0 chrX 161803903 161804212 -795718 - AluSx SINE Alu -2 310 1 253 243 112 47 chrX 161804212 161804248 -795682 - L1MC4a LINE L1 -1300 6508 6476 2357 104 3 0 chrX 161804574 161804883 -795047 - AluSx SINE Alu -2 310 1 738 296 65 24 chrX 161805131 161805502 -794428 - HAL1b LINE L1 -613 735 350 398 68 0 17 chrX 161805565 161805624 -794306 + (TG)n Simple_repeat Simple_repeat 2 59 0 239 261 183 0 chrX 161805804 161805919 -794011 - MIR SINE MIR -6 256 121 285 291 165 32 chrX 161806256 161806414 -793516 + MIR SINE MIR 28 206 -56 917 207 116 15 chrX 161806429 161806627 -793303 - MER58A DNA MER1_type -1 223 6 1362 44 12 0 chrX 161806899 161807059 -792871 + L1PA10 LINE L1 6003 6164 -4 183 229 49 33 chrX 161807303 161807364 -792566 - L2 LINE L2 -5 3267 3206 200 349 0 0 chrX 161807695 161807778 -792152 + L2 LINE L2 2431 2513 -801 365 243 99 45 chrX 161808703 161808814 -791116 + L2 LINE L2 3187 3303 -10 22 56 0 0 chrX 161808833 161808869 -791061 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chrX 161809429 161809472 -790458 + AT_rich Low_complexity Low_complexity 1 43 0 2452 135 11 3 chrX 161810309 161810671 -789259 - MLT1A1 LTR MaLR 0 365 1 220 254 55 0 chrX 161811121 161811176 -788754 - L2 LINE L2 -6 3307 3250 2477 166 134 4 chrX 161813938 161814462 -785468 - L1 LINE L1 -1005 5141 4550 216 86 0 0 chrX 161814591 161814626 -785304 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1487 221 158 22 chrX 161814830 161815241 -784689 + MLT1C LTR MaLR 1 467 0 525 306 341 10 chrX 161815482 161816066 -783864 - L2 LINE L2 -1814 1500 724 2173 113 0 0 chrX 161816935 161817227 -782703 + AluSx SINE Alu 1 292 -20 1276 148 70 18 chrX 161817598 161817618 -782312 - L1MA3 LINE L1 -150 6155 6138 9406 19 6 0 chrX 161817618 161819422 -780508 - L1PA3 LINE L1 -3 6152 4342 1276 148 70 18 chrX 161819422 161819685 -780245 - L1MA3 LINE L1 -167 6138 5857 398 95 42 0 chrX 162019690 162019785 -580145 + (CA)n Simple_repeat Simple_repeat 1 99 0 * 1620 2 0 11 chrX 162019783 162020204 -579726 + (CCCTAA)n Simple_repeat Simple_repeat 1 416 0 242 71 0 24 chrX 162020215 162020257 -579673 + (CCCTA)n Simple_repeat Simple_repeat 1 41 0 1066 33 6 38 chrX 162020282 162020465 -579465 + (CCCTAA)n Simple_repeat Simple_repeat 3 179 0 6188 115 243 17 chrX 162020469 162020503 -579427 - TAR1 Satellite telomeric 0 2111 2086 1166 56 6 17 chrX 162020503 162020682 -579248 + (CCCCAA)n Simple_repeat Simple_repeat 1 177 0 6188 115 243 17 chrX 162020682 162021987 -577943 - TAR1 Satellite telomeric -25 2086 469 444 226 173 36 chrX 162022010 162022202 -577728 - L1ME LINE L1 -498 5668 5449 286 301 19 10 chrX 162022204 162022307 -577623 - MER5B DNA MER1_type -74 104 1 307 230 38 0 chrX 162025778 162025869 -574061 - MIR SINE MIR -65 143 49 207 196 0 20 chrX 162026307 162026358 -573572 + CT-rich Low_complexity Low_complexity 4 53 0 203 162 0 0 chrX 162027229 162027266 -572664 + (TGG)n Simple_repeat Simple_repeat 1 37 0 266 322 147 0 chrX 162029429 162029572 -570358 + L2 LINE L2 2836 2999 -314 866 139 3 18 chrX 162030363 162030697 -569233 + (CCCTAA)n Simple_repeat Simple_repeat 1 328 0 9643 90 19 4 chrX 162030736 162032107 -567823 - L1P LINE L1 -4734 1412 22 1559 248 44 14 chrX 162032095 162032680 -567250 - L1ME LINE L1 -804 5342 4740 * 352 236 56 20 chrX 162032683 162032878 -567052 - L1ME LINE L1 -1597 4549 4348 1298 186 0 76 chrX 162032912 162033240 -566690 + AluJb SINE Alu 1 303 -9 1990 126 0 0 chrX 162033265 162033543 -566387 - AluSx SINE Alu -20 292 15 2138 104 7 3 chrX 162034227 162034535 -565395 - AluSc SINE Alu 0 309 1 1584 122 3 82 chrX 162034536 162034839 -565091 - AluSx SINE Alu -19 293 15 2100 85 4 0 chrX 162035311 162035616 -564314 - AluSp SINE Alu 0 306 1 410 95 14 27 chrX 162035699 162035773 -564157 + Alu SINE Alu 240 312 0 2110 113 0 28 chrX 162036074 162036392 -563538 - AluSg1 SINE Alu 0 309 1 1858 149 0 20 chrX 162036392 162036694 -563236 - AluSx SINE Alu -16 296 1 3503 106 15 0 chrX 162037476 162037947 -561983 - MER66A LTR ERV1 0 478 1 841 214 145 28 chrX 162038097 162038284 -561646 + MLT1C LTR MaLR 35 269 -198 2128 122 0 0 chrX 162038284 162038588 -561342 + AluSq SINE Alu 1 304 -9 841 214 145 28 chrX 162038588 162038687 -561243 + MLT1C LTR MaLR 269 355 -112 333 300 55 9 chrX 162038687 162038797 -561133 + LTR35 LTR ERV1 4 118 -500 567 267 46 49 chrX 162038912 162039246 -560684 + LTR35 LTR ERV1 349 618 0 * 652 189 0 8 chrX 162039246 162039364 -560566 + MLT1C LTR MaLR 351 467 0 282 95 0 0 chrX 162040416 162040458 -559472 + (CTG)n Simple_repeat Simple_repeat 3 44 0 1016 110 2 5 chrX 162041134 162041725 -558205 + (CA)n Simple_repeat Simple_repeat 1 589 0 183 272 0 0 chrX 162044291 162044383 -555547 + (CA)n Simple_repeat Simple_repeat 1 92 0 190 183 28 0 chrX 162045422 162045493 -554437 + (CA)n Simple_repeat Simple_repeat 2 74 0 381 313 11 22 chrX 162045555 162045737 -554193 + (CA)n Simple_repeat Simple_repeat 1 180 0 258 91 23 0 chrX 162045751 162045795 -554135 - MER4B-int LTR ERV1 -5563 1195 1151 184 276 35 0 chrX 162047846 162047904 -552026 - MIR SINE MIR -68 140 81 413 294 48 0 chrX 162048083 162048209 -551721 - MIR SINE MIR -50 212 81 2011 101 10 27 chrX 162048225 162048523 -551407 - AluSx SINE Alu -19 293 1 223 164 109 0 chrX 162049622 162049677 -550253 - MIR SINE MIR -56 152 92 207 154 0 0 chrX 162050403 162050437 -549493 + (TA)n Simple_repeat Simple_repeat 1 35 0 1970 116 0 33 chrX 162050437 162050740 -549190 - AluSx SINE Alu -19 293 1 25 0 0 0 chrX 162051996 162052021 -547909 + AT_rich Low_complexity Low_complexity 1 25 0 2239 88 3 7 chrX 162053479 162053787 -546143 - AluSc SINE Alu -2 307 1 2057 110 10 7 chrX 162053787 162054086 -545844 - AluSx SINE Alu -10 302 1 663 201 0 22 chrX 162054260 162054394 -545536 + FLAM_C SINE Alu 3 133 0 692 143 0 42 chrX 162054443 162054562 -545368 - FRAM SINE Alu -1 175 62 752 287 70 24 chrX 162054567 162054920 -545010 - L1ME LINE L1 -397 5724 5352 1312 231 44 42 chrX 162055121 162055662 -544268 + L1ME LINE L1 310 851 -5219 1829 131 4 0 chrX 162055692 162055960 -543970 + AluSx SINE Alu 44 312 0 1737 140 18 21 chrX 162056020 162056306 -543624 + AluJb SINE Alu 1 285 -27 272 100 0 0 chrX 162056347 162056387 -543543 + MIR SINE MIR 104 143 -119 330 177 165 0 chrX 162056448 162056527 -543403 + MER58 DNA MER1_type 1 92 -123 1772 127 72 4 chrX 162056557 162056833 -543097 - AluJo SINE Alu -17 295 1 1123 114 54 114 chrX 162056833 162057077 -542853 - L1MB3 LINE L1 -42 6141 5915 2156 117 0 19 chrX 162057077 162057394 -542536 - AluSx SINE Alu -1 311 1 1123 114 54 114 chrX 162057394 162057429 -542501 - L1MB3 LINE L1 -268 5915 5879 576 214 0 14 chrX 162057424 162057564 -542366 - L1M4 LINE L1 -3803 2343 2206 * 1099 173 42 28 chrX 162057569 162057783 -542147 - AluJb SINE Alu -9 303 87 1026 130 66 93 chrX 162057806 162057983 -541947 - L1MA7 LINE L1 -11 6280 6113 1313 220 30 20 chrX 162057983 162058283 -541647 + AluJo SINE Alu 1 303 -9 1026 130 66 93 chrX 162058283 162058406 -541524 - L1MA7 LINE L1 -178 6113 5988 1898 92 9 38 chrX 162058406 162058753 -541177 - L1M4c LINE L1 -3931 2453 2117 1048 180 0 21 chrX 162058753 162058768 -541162 + AluJb SINE Alu 122 136 -176 1672 166 17 7 chrX 162058768 162059069 -540861 + AluSx SINE Alu 1 304 -8 1048 180 0 21 chrX 162059069 162059242 -540688 + AluJb SINE Alu 136 306 -6 2819 147 46 21 chrX 162059242 162059550 -540380 - L1M4c LINE L1 -4280 2104 1774 1835 120 62 0 chrX 162059550 162059824 -540106 + AluSx SINE Alu 1 291 -21 2819 147 46 21 chrX 162059824 162060081 -539849 - L1M4c LINE L1 -4610 1774 1525 1924 121 3 23 chrX 162060081 162060386 -539544 + AluSx SINE Alu 1 299 -13 1412 134 67 16 chrX 162060404 162060657 -539273 + MER84-int LTR ERV1 290 555 -4399 627 135 0 0 chrX 162060651 162060747 -539183 + MER84-int LTR ERV1 684 779 -4175 * 10250 118 36 6 chrX 162060746 162062303 -537627 + MER84-int LTR ERV1 894 2497 -2457 1867 157 67 14 chrX 162062303 162062659 -537271 - THE1C LTR MaLR 0 375 1 4203 128 6 9 chrX 162062664 162063296 -536634 - THE1C-int LTR MaLR -6 1574 945 279 108 0 0 chrX 162063297 162063334 -536596 - THE1C-int LTR MaLR -614 966 930 4527 55 47 33 chrX 162063337 162063937 -535993 + LTR14B LTR ERVK 1 608 0 1558 95 0 14 chrX 162063937 162064159 -535771 + HERVK14 LTR ERVK 1 219 -5726 240 235 132 15 chrX 162064235 162064303 -535627 - MER69 DNA AcHobo -2450 76 1 266 59 0 0 chrX 162065350 162065384 -534546 + HERVK14C LTR ERVK 187 220 -7023 * 309 129 0 129 chrX 162065383 162065453 -534477 + HERVK14C LTR ERVK 161 221 -7022 288 78 255 0 chrX 162065422 162065473 -534457 + HERVK14C LTR ERVK 155 218 -7025 * 326 36 254 0 chrX 162065486 162065541 -534389 + HERVK14C LTR ERVK 150 218 -7025 461 338 34 19 chrX 162065589 162065974 -533956 + HERVK14C LTR ERVK 6349 6588 -655 4239 56 45 92 chrX 162066165 162066803 -533127 + LTR14B LTR ERVK 1 608 0 5501 138 3 54 chrX 162066804 162067249 -532681 - THE1C-int LTR MaLR -646 934 565 2154 119 3 0 chrX 162067249 162067552 -532378 - AluSx SINE Alu -8 304 1 5501 138 3 54 chrX 162067552 162068088 -531842 - THE1C-int LTR MaLR -1015 565 3 1813 151 108 17 chrX 162068090 162068434 -531496 - THE1C LTR MaLR 0 375 1 7965 126 7 1 chrX 162068434 162069566 -530364 + MER84-int LTR ERV1 2493 3631 -1323 253 98 20 20 chrX 162069572 162069623 -530307 + (CCCTAA)n Simple_repeat Simple_repeat 4 54 0 1879 136 3 24 chrX 162069627 162069980 -529950 - MER4A LTR ERV1 0 664 261 624 74 42 11 chrX 162069980 162070075 -529855 - MER4A LTR ERV1 -566 98 1 352 120 0 27 chrX 162070075 162070150 -529780 + (CCCTAA)n Simple_repeat Simple_repeat 6 78 0 1207 291 42 48 chrX 162070357 162071072 -528858 + L1MC4 LINE L1 3676 4386 -1760 1683 135 94 8 chrX 162072089 162072355 -527575 + AluJo SINE Alu 1 289 -23 878 213 46 6 chrX 162072649 162072823 -527107 + AluJo SINE Alu 119 299 -13 596 200 33 0 chrX 162072823 162072973 -526957 + L1MC4 LINE L1 4396 4550 -1596 1319 168 4 13 chrX 162073143 162073375 -526555 + LTR2B LTR ERV1 261 490 0 45162 188 9 8 chrX 162073375 162081179 -518751 + HERVE LTR ERV1 1 7812 -1 2071 189 93 30 chrX 162081179 162081640 -518290 + LTR2B LTR ERV1 1 490 0 4045 107 16 9 chrX 162082054 162082616 -517314 + MER61E LTR ERV1 1 566 -3 262 268 24 0 chrX 162082801 162082883 -517047 + L1MC4 LINE L1 7763 7846 -196 235 253 36 12 chrX 162082919 162083002 -516928 + L1MC4 LINE L1 7956 8040 -2 3244 237 109 29 chrX 162083643 162084005 -515925 + L1MC4 LINE L1 4901 4428 -1718 723 223 0 0 chrX 162084005 162084126 -515804 + FLAM_A SINE Alu 1 121 -12 3244 237 109 29 chrX 162084126 162085186 -514744 + L1MC4 LINE L1 4427 5401 -745 1118 199 75 59 chrX 162085241 162085562 -514368 - MER21B LTR ERV1 -60 803 478 460 160 0 0 chrX 162085562 162085637 -514293 + MLT1A1 LTR MaLR 4 78 -287 6911 59 149 20 chrX 162085651 162086689 -513241 + MER11A LTR ERVK 1 1266 0 1354 204 20 0 chrX 162086700 162086945 -512985 + MLT1A1 LTR MaLR 115 364 -1 497 320 46 34 chrX 162086946 162087121 -512809 - MER21B LTR ERV1 -378 485 309 1228 203 21 8 chrX 162087122 162087359 -512571 - AluJo SINE Alu -24 288 49 1110 202 186 8 chrX 162087365 162087613 -512317 - MER21B LTR ERV1 -553 310 19 495 205 0 0 chrX 162087635 162087713 -512217 - MER21B LTR ERV1 -773 90 13 4909 207 79 28 chrX 162087764 162088190 -511740 + L1MC3 LINE L1 6407 6810 -975 189 0 0 0 chrX 162088190 162088211 -511719 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4909 207 79 28 chrX 162088211 162089088 -510842 + L1MC3 LINE L1 6810 7777 -8 294 53 0 0 chrX 162089138 162089176 -510754 + U3 snRNA snRNA 1 38 -179 2298 89 10 0 chrX 162089490 162089781 -510149 + AluSg SINE Alu 1 294 -16 2643 145 24 14 chrX 162090322 162090915 -509015 + MER4E LTR ERV1 1 766 0 337 294 27 14 chrX 162090988 162091134 -508796 - LTR23 LTR ERV1 0 437 290 1662 200 100 47 chrX 162091244 162091714 -508216 + MER50 LTR ERV1 240 734 0 5453 58 48 1 chrX 162091759 162092449 -507481 + LTR30 LTR ERV1 1 722 0 622 98 87 0 chrX 162092450 162092542 -507388 + MER51-int LTR ERV1 7225 7324 -492 583 201 117 65 chrX 162092542 162092765 -507165 + LTR54 LTR ERV1 29 310 -188 4137 99 63 2 chrX 162092765 162093338 -506592 - MER4B LTR ERV1 -2 608 1 583 201 117 65 chrX 162093338 162093420 -506510 + LTR54 LTR ERV1 310 386 -112 450 164 9 109 chrX 162093438 162093586 -506344 + MER57B-int LTR ERV1 7025 7537 0 867 279 48 32 chrX 162093604 162093981 -505949 + MER57B LTR ERV1 52 434 0 709 87 0 19 chrX 162094048 162094152 -505778 - LTR7 LTR ERV1 0 450 349 * 1459 164 111 0 chrX 162094149 162094429 -505501 + MER52A LTR ERV1 1445 1755 0 622 202 50 106 chrX 162095007 162095329 -504601 + L1M4 LINE L1 4305 4608 -1538 334 237 14 13 chrX 162095447 162095680 -504250 + (CCCTAA)n Simple_repeat Simple_repeat 1 233 0 1366 227 47 28 chrX 162095833 162096194 -503736 - MER87 LTR ERV1 0 541 174 329 298 17 28 chrX 162096808 162096989 -502941 + (CCCGAA)n Simple_repeat Simple_repeat 2 180 0 232 336 14 14 chrX 162097107 162097247 -502683 + (CCCCAA)n Simple_repeat Simple_repeat 2 141 0 * 255 263 0 30 chrX 162097154 162097253 -502677 + (CCCTAA)n Simple_repeat Simple_repeat 3 98 0 200 306 6 39 chrX 162097742 162097922 -502008 + (CCCTAA)n Simple_repeat Simple_repeat 1 174 0 * 291 319 7 28 chrX 162097798 162097942 -501988 + (CCCGAA)n Simple_repeat Simple_repeat 5 145 0 251 274 40 74 chrX 162098350 162098525 -501405 + LTR31 LTR ERV1 442 610 -9 205 109 43 0 chrX 162098599 162098645 -501285 + (CCCTAA)n Simple_repeat Simple_repeat 6 53 0 237 316 0 32 chrX 162098789 162098944 -500986 + (CCCGAA)n Simple_repeat Simple_repeat 4 153 0 217 217 0 22 chrX 162099007 162099053 -500877 + (CCCCAA)n Simple_repeat Simple_repeat 5 49 0 204 373 25 0 chrX 162099069 162099227 -500703 + (CCCCAG)n Simple_repeat Simple_repeat 5 166 0 * 313 294 5 54 chrX 162099154 162099338 -500592 + (CCCCAA)n Simple_repeat Simple_repeat 3 177 0 250 287 0 23 chrX 162099452 162099539 -500391 + (CCCCAA)n Simple_repeat Simple_repeat 5 89 0 235 339 0 9 chrX 162099584 162099699 -500231 + (CCCCAA)n Simple_repeat Simple_repeat 2 115 0 219 288 25 42 chrX 162099907 162100025 -499905 + (CCCGAA)n Simple_repeat Simple_repeat 2 117 0 215 333 0 22 chrX 162099979 162100159 -499771 + (CCCTAA)n Simple_repeat Simple_repeat 1 176 0 * 326 348 7 0 chrX 162100233 162100368 -499562 + (CCCCAA)n Simple_repeat Simple_repeat 2 137 0 218 355 0 9 chrX 162100672 162100782 -499148 + (CCCCAA)n Simple_repeat Simple_repeat 2 110 0 414 275 0 60 chrX 162100888 162101055 -498875 + (CCCGAA)n Simple_repeat Simple_repeat 2 158 0 277 343 15 15 chrX 162101058 162101105 -498825 + (CCCCAG)n Simple_repeat Simple_repeat 3 49 -90 2780 168 53 16 chrX 162101105 162101558 -498372 - MER70A LTR ERVL -2 470 1 277 343 15 15 chrX 162101558 162101647 -498283 + (CCCCAG)n Simple_repeat Simple_repeat 48 139 0 275 343 17 34 chrX 162101751 162101929 -498001 + (CCCGAA)n Simple_repeat Simple_repeat 5 179 0 * 300 305 7 27 chrX 162101856 162102206 -497724 + (CCCTAA)n Simple_repeat Simple_repeat 1 343 0 2316 108 0 10 chrX 162102213 162102519 -497411 + AluSx SINE Alu 1 303 -9 488 227 196 26 chrX 162103024 162103253 -496677 - L1MEc LINE L1 -3719 2496 2229 * 1989 243 72 24 chrX 162103243 162103730 -496200 - L1MEc LINE L1 -5234 1162 700 971 188 41 37 chrX 162103730 162103948 -495982 + MER20 DNA MER1_type 1 219 0 1989 243 72 24 chrX 162103948 162104487 -495443 - L1MEc LINE L1 -5696 700 35 1243 311 91 30 chrX 162104857 162105184 -494746 + MLT2E LTR ERVL 32 409 -219 2338 144 19 16 chrX 162105184 162105558 -494372 - THE1C LTR MaLR 0 375 1 1243 311 91 30 chrX 162105558 162105793 -494137 + MLT2E LTR ERVL 409 628 0 24 53 0 0 chrX 162109097 162109135 -490795 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chrX 162109308 162109335 -490595 + AT_rich Low_complexity Low_complexity 1 27 0 863 176 0 0 chrX 162109414 162109556 -490374 - FLAM_C SINE Alu -1 142 1 192 125 0 0 chrX 162109775 162109807 -490123 + (CA)n Simple_repeat Simple_repeat 1 32 0 793 180 81 19 chrX 162110335 162110546 -489384 - Charlie1 DNA MER1_type 0 2761 2538 248 281 22 11 chrX 162111330 162111419 -488511 + L2 LINE L2 1583 1672 -1642 939 232 44 27 chrX 162111460 162111753 -488177 + L1ME3A LINE L1 5614 5911 -259 1144 142 0 0 chrX 162111753 162111915 -488015 - AluJb SINE Alu -14 298 137 860 224 60 20 chrX 162111929 162112130 -487800 + L1ME3A LINE L1 5947 6155 -15 218 269 0 0 chrX 162112735 162112787 -487143 - L2 LINE L2 0 3313 3262 241 278 26 46 chrX 162112798 162112949 -486981 + HAL1 LINE L1 1230 1377 -1130 1471 161 12 43 chrX 162112984 162113008 -486922 - L1 LINE L1 -1479 4667 4644 2614 157 33 11 chrX 162113008 162113467 -486463 - L1MA9 LINE L1 0 6312 5844 1471 161 12 43 chrX 162113467 162113764 -486166 - L1 LINE L1 -1502 4644 4356 * 28984 51 5 1 chrX 162113761 162119867 -480063 + L1PA5 LINE L1 11 6147 -7 186 150 0 0 chrX 162119880 162119920 -480010 + (A)n Simple_repeat Simple_repeat 1 40 0 1385 216 0 48 chrX 162119920 162120230 -479700 - AluJo SINE Alu -17 295 1 1347 243 80 18 chrX 162120311 162120710 -479220 + MER77 LTR ERV1 178 601 -4 2452 73 31 13 chrX 162121018 162121399 -478531 + LTR23 LTR ERV1 1 388 -49 285 232 32 21 chrX 162121458 162121553 -478377 + HAL1 LINE L1 1536 1631 -876 1716 216 65 34 chrX 162121829 162122302 -477628 + MLT1D LTR MaLR 16 503 -2 1748 161 7 20 chrX 162122362 162122685 -477245 + AluJb SINE Alu 1 319 0 264 275 55 42 chrX 162122761 162122971 -476959 + L1M2 LINE L1 1728 2201 -4226 329 227 31 117 chrX 162123029 162123157 -476773 + Tigger1 DNA MER2_type 1 117 -2301 1996 49 4 0 chrX 162123203 162123450 -476480 - L1PA7 LINE L1 0 6154 5907 7634 117 41 4 chrX 162123450 162124698 -475232 + Tigger1 DNA MER2_type 104 1397 -1021 641 101 0 10 chrX 162124698 162124797 -475133 + MER4A LTR ERV1 1 98 -566 1662 126 3 77 chrX 162124797 162125170 -474760 + MER4A LTR ERV1 261 664 0 * 5610 93 13 10 chrX 162125170 162125994 -473936 + Tigger1 DNA MER2_type 1394 2220 -198 1729 127 16 22 chrX 162125994 162126310 -473620 + L1MB4 LINE L1 5861 6174 -6 422 174 0 0 chrX 162126321 162126407 -473523 + L1MB8 LINE L1 6093 6178 0 795 221 128 7 chrX 162126563 162126844 -473086 + L1ME3 LINE L1 1148 1462 -5145 2303 210 61 52 chrX 162126903 162127747 -472183 + L1ME3 LINE L1 1403 2440 -4167 3063 226 130 24 chrX 162127748 162128962 -470968 + L1ME3 LINE L1 3778 5120 -1306 1325 225 88 6 chrX 162128963 162129348 -470582 + L1ME3 LINE L1 6037 6443 -7 193 231 39 19 chrX 162129575 162129627 -470303 - MIR SINE MIR -124 84 32 1254 207 41 4 chrX 162129754 162129996 -469934 - MIR SINE MIR 0 262 12 1651 171 13 9 chrX 162130860 162131176 -468754 + L1MB8 LINE L1 1313 1629 -5220 * 2713 170 11 36 chrX 162131173 162131784 -468146 + L1MEc LINE L1 3616 4211 -2215 30365 100 18 57 chrX 162131822 162138221 -461709 + L1PA7 LINE L1 12 6151 -3 7263 133 18 24 chrX 162138376 162140769 -459161 + L1MEc LINE L1 4208 6572 -11 927 206 27 14 chrX 162140772 162140991 -458939 + MLT1A2 LTR MaLR 153 374 0 7308 197 53 28 chrX 162140994 162141458 -458472 + L1MB8 LINE L1 3743 4194 -2686 1490 142 0 30 chrX 162141458 162141690 -458240 + AluJo SINE Alu 1 225 -87 7308 197 53 28 chrX 162141690 162141730 -458200 + L1MB8 LINE L1 4194 4232 -2648 360 123 31 0 chrX 162141730 162141795 -458135 + AluJo SINE Alu 234 300 -2 7308 197 53 28 chrX 162141795 162141992 -457938 + L1MB8 LINE L1 4232 4423 -2457 10171 51 60 10 chrX 162141992 162143331 -456599 + SVA Other Other 1 1386 0 7308 197 53 28 chrX 162143331 162144057 -455873 + L1MB8 LINE L1 4423 5129 -1751 1949 179 96 9 chrX 162144057 162144486 -455444 - MER31B LTR ERV1 0 466 1 7308 197 53 28 chrX 162144486 162145661 -454269 + L1MB8 LINE L1 5129 6430 -450 244 0 56 0 chrX 162145661 162145697 -454233 + (TA)n Simple_repeat Simple_repeat 2 39 0 7308 197 53 28 chrX 162145697 162146160 -453770 + L1MB8 LINE L1 6430 6880 0 7614 22 0 0 chrX 162146220 162147356 -452574 - L1PA3 LINE L1 -3 6152 5015 13752 29 2 0 chrX 162147356 162149064 -450866 + L1PA3 LINE L1 3293 5004 -1142 27 49 0 0 chrX 162150317 162150358 -449572 + AT_rich Low_complexity Low_complexity 1 41 0 369 233 114 80 chrX 162150633 162150809 -449121 - MIR SINE MIR -4 258 77 201 74 0 0 chrX 162151015 162151042 -448888 + (TG)n Simple_repeat Simple_repeat 1 27 0 2762 175 49 62 chrX 162151213 162151933 -447997 + L1ME2 LINE L1 5409 6118 -46 302 296 92 46 chrX 162151970 162152122 -447808 + L3 LINE CR1 1412 1570 -7 418 295 14 14 chrX 162152570 162152709 -447221 - MIR SINE MIR -85 177 39 216 244 0 0 chrX 162153017 162153058 -446872 + (TG)n Simple_repeat Simple_repeat 2 42 0 1107 209 109 52 chrX 162153275 162153697 -446233 + Charlie4a DNA MER1_type 1 446 -62 316 265 108 10 chrX 162153778 162153880 -446050 + MLT1L LTR MaLR 146 257 -358 2317 116 12 6 chrX 162154497 162154832 -445098 - MER1B DNA MER1_type 0 337 1 548 348 58 77 chrX 162155368 162155666 -444264 - L2 LINE L2 -16 3256 2954 2170 126 0 13 chrX 162155666 162155976 -443954 + AluJb SINE Alu 1 306 -6 548 348 58 77 chrX 162155976 162156528 -443402 - L2 LINE L2 -318 2954 2415 553 311 171 24 chrX 162156600 162156757 -443173 + L2 LINE L2 1854 1987 -1327 1550 202 94 9 chrX 162156757 162157098 -442832 + MLT1A2 LTR MaLR 1 370 -4 553 311 171 24 chrX 162157098 162157409 -442521 + L2 LINE L2 1987 2391 -923 2289 85 0 0 chrX 162157533 162157844 -442086 + AluSq SINE Alu 1 311 0 335 338 71 33 chrX 162157914 162158209 -441721 - L2 LINE L2 -196 3076 2772 289 303 37 18 chrX 162158482 162158591 -441339 + MLT1J2 LTR MaLR 65 175 -275 333 310 82 0 chrX 162159312 162159470 -440460 + MLT1J LTR MaLR 9 179 -332 559 301 65 68 chrX 162159859 162159925 -440005 + L2 LINE L2 2653 2718 -596 2158 113 0 0 chrX 162159925 162160235 -439695 + AluSx SINE Alu 1 310 0 559 301 65 68 chrX 162160235 162160492 -439438 + L2 LINE L2 2718 2976 -338 516 256 80 8 chrX 162160538 162160663 -439267 + L2 LINE L2 3138 3271 -1 238 325 26 8 chrX 162161408 162161525 -438405 + L1ME LINE L1 5543 5661 -460 1035 259 36 4 chrX 162161574 162161825 -438105 - MIR SINE MIR 0 262 4 477 250 41 87 chrX 162162124 162162320 -437610 - MER5A DNA MER1_type 0 189 3 689 294 201 16 chrX 162162576 162162623 -437307 + L2 LINE L2 1711 1748 -1566 2104 120 3 32 chrX 162162623 162162939 -436991 - AluJb SINE Alu -5 307 1 689 294 201 16 chrX 162162939 162163330 -436600 + L2 LINE L2 1748 2230 -1084 211 274 118 33 chrX 162163335 162163488 -436442 - L2 LINE L2 -1145 2169 2004 1195 304 91 14 chrX 162163657 162164141 -435789 + L3 LINE CR1 852 1372 -205 206 282 0 35 chrX 162164441 162164526 -435404 + A-rich Low_complexity Low_complexity 3 84 0 2112 187 19 50 chrX 162164623 162165105 -434825 - MLT1C LTR MaLR 0 467 1 284 114 0 0 chrX 162165118 162165162 -434768 - U2 snRNA snRNA -144 44 1 2427 81 3 0 chrX 162166159 162166456 -433474 + AluSp SINE Alu 1 298 -15 2364 72 13 16 chrX 162166574 162166878 -433052 + AluSx SINE Alu 1 303 -9 252 328 62 16 chrX 162167408 162167536 -432394 - L2 LINE L2 -5 3267 3134 324 247 129 0 chrX 162167711 162167804 -432126 + L2 LINE L2 3209 3313 0 555 259 111 21 chrX 162168200 162168389 -431541 + L2 LINE L2 3108 3313 0 225 344 67 56 chrX 162169550 162169925 -430005 + L2 LINE L2 1353 1731 -1583 406 289 128 33 chrX 162170010 162170084 -429846 + L2 LINE L2 1910 1976 -1338 2286 109 0 3 chrX 162170084 162170387 -429543 - AluSg SINE Alu -8 302 1 406 289 128 33 chrX 162170387 162170585 -429345 + L2 LINE L2 1976 2208 -1106 452 71 0 29 chrX 162170843 162170913 -429017 + MSTA LTR MaLR 228 295 -133 1665 76 0 0 chrX 162170913 162171137 -428793 + MER41A LTR ERV1 1 224 -330 280 251 71 0 chrX 162171405 162171499 -428431 + MIR SINE MIR 46 150 -62 2343 71 16 3 chrX 162171656 162171966 -427964 - L1PA10 LINE L1 -3 6165 5852 1310 119 0 0 chrX 162172349 162172526 -427404 - FRAM SINE Alu -4 172 1 573 161 0 1 chrX 162173994 162174103 -425827 - L1PA16 LINE L1 -191 5975 5868 1539 130 0 4 chrX 162174162 162174409 -425521 - L1PA16 LINE L1 -266 5900 5655 724 156 7 21 chrX 162174410 162174551 -425379 + L1PA16 LINE L1 6022 6160 -6 538 316 142 35 chrX 162174930 162175304 -424626 + L2 LINE L2 2900 3313 0 368 270 17 35 chrX 162175331 162175446 -424484 - MIR SINE MIR -33 229 117 317 207 232 0 chrX 162176702 162176784 -423146 - L2 LINE L2 -18 3295 3195 183 216 0 0 chrX 162176987 162177024 -422906 - MIR SINE MIR -129 133 97 282 209 45 15 chrX 162177482 162177549 -422381 - L2 LINE L2 -3 3269 3201 314 231 256 8 chrX 162177638 162177759 -422171 + MIR3 SINE MIR 48 198 -10 231 351 15 23 chrX 162178082 162178213 -421717 + MER5B DNA MER1_type 43 172 -6 267 265 12 12 chrX 162178324 162178407 -421523 - L3b LINE CR1 -172 1411 1329 203 283 0 0 chrX 162178751 162178797 -421133 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 365 156 55 31 chrX 162179361 162179489 -420441 + (TTAAA)n Simple_repeat Simple_repeat 4 134 0 1266 305 192 20 chrX 162179692 162180092 -419838 - L2 LINE L2 -1052 2262 1932 2746 130 109 50 chrX 162180092 162180668 -419262 + MER4B LTR ERV1 1 610 0 1266 305 192 20 chrX 162180668 162181227 -418703 - L2 LINE L2 -1382 1932 1138 310 355 79 15 chrX 162181228 162181486 -418444 - L1ME3A LINE L1 -250 5920 5642 3553 93 10 2 chrX 162181486 162181982 -417948 + LTR3b LTR ERVK 1 500 0 318 295 0 18 chrX 162181982 162182094 -417836 - L1ME3A LINE L1 -471 5650 5541 3197 109 39 15 chrX 162182101 162182635 -417295 + LTR10A LTR ERV1 1 547 -62 25 0 0 0 chrX 162182979 162183004 -416926 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 162183824 162183846 -416084 + AT_rich Low_complexity Low_complexity 1 22 0 361 209 5 0 chrX 162184037 162184121 -415809 + FRAM SINE Alu 73 146 -20 3382 84 96 153 chrX 162184281 162185011 -414919 - LTR12 LTR ERV1 0 688 1 804 227 34 45 chrX 162185094 162185385 -414545 - pTR5 LTR ERV1 -1410 1028 741 430 363 99 18 chrX 162185446 162185730 -414200 + L2 LINE L2 2384 2690 -624 1025 249 39 116 chrX 162185803 162186187 -413743 + L1M4 LINE L1 915 1274 -4857 3189 139 36 0 chrX 162186187 162186742 -413188 + L1MA3 LINE L1 5731 6305 0 1025 249 39 116 chrX 162186742 162186770 -413160 + L1M4 LINE L1 1274 1303 -4828 189 0 0 0 chrX 162186771 162186792 -413138 + (CA)n Simple_repeat Simple_repeat 2 22 0 592 206 27 96 chrX 162186799 162187018 -412912 - LTR37A LTR ERV1 -168 258 55 565 297 78 29 chrX 162187221 162187642 -412288 + L1M4 LINE L1 2795 3236 -2974 941 243 51 72 chrX 162187705 162188120 -411810 - MLT1J1 LTR MaLR -32 414 9 431 320 54 19 chrX 162188126 162188385 -411545 + L1M4 LINE L1 3301 3568 -2642 1396 158 0 4 chrX 162188389 162188617 -411313 + L1PA15 LINE L1 5939 6165 0 40 49 0 0 chrX 162188867 162188928 -411002 + AT_rich Low_complexity Low_complexity 1 61 0 772 306 119 58 chrX 162189185 162189492 -410438 + L1M4 LINE L1 4316 4603 -1607 2094 131 0 0 chrX 162189492 162189782 -410148 - AluSq SINE Alu -23 290 1 772 306 119 58 chrX 162189782 162189910 -410020 + L1M4 LINE L1 4603 4722 -1488 2694 16 7 0 chrX 162189910 162190216 -409714 - AluY SINE Alu -3 308 1 772 306 119 58 chrX 162190216 162190530 -409400 + L1M4 LINE L1 4722 5015 -1195 2122 102 0 3 chrX 162190530 162190866 -409064 + AluSq SINE Alu 1 335 0 772 306 119 58 chrX 162190866 162191131 -408799 + L1M4 LINE L1 5015 5395 -815 683 106 0 0 chrX 162191249 162191353 -408577 - L1MA5 LINE L1 -331 5969 5866 1135 189 154 0 chrX 162191354 162191613 -408317 - MSTD LTR MaLR -58 338 40 1800 119 4 0 chrX 162191623 162191867 -408063 + AluSx SINE Alu 1 245 -67 26 64 0 0 chrX 162191926 162191973 -407957 + AT_rich Low_complexity Low_complexity 1 47 0 494 175 26 0 chrX 162192028 162192142 -407788 + L1MC4 LINE L1 7926 8042 0 2321 92 10 0 chrX 162192213 162192519 -407411 - AluSq SINE Alu -4 309 1 873 227 113 51 chrX 162192577 162192930 -407000 - L1MEd LINE L1 -5302 817 443 391 357 43 43 chrX 162192976 162193304 -406626 - L1MEd LINE L1 -5737 382 55 * 497 343 138 16 chrX 162193288 162193848 -406082 - L1 LINE L1 -3235 2911 2284 581 333 101 14 chrX 162193907 162194204 -405726 + L2 LINE L2 1609 1931 -1383 935 210 94 83 chrX 162194249 162194470 -405460 - L1ME1 LINE L1 -7 6159 5942 2524 77 0 6 chrX 162194470 162194783 -405147 + AluY SINE Alu 1 311 0 935 210 94 83 chrX 162194783 162195026 -404904 - L1ME1 LINE L1 -224 5942 5703 320 188 0 0 chrX 162195026 162195095 -404835 - L1PB4 LINE L1 -1 7115 7047 935 210 94 83 chrX 162195095 162195166 -404764 - L1ME1 LINE L1 -463 5703 5410 23914 45 11 6 chrX 162195166 162198930 -401000 + L1PA5 LINE L1 2379 6147 -7 2839 234 28 1 chrX 162199243 162200034 -399896 - L1ME1 LINE L1 -1082 5064 4253 2855 157 57 20 chrX 162200075 162200369 -399561 - L1MA9 LINE L1 -25 6287 5994 1094 222 151 13 chrX 162200369 162200850 -399080 - L1PB4 LINE L1 -181 6935 6377 446 164 250 0 chrX 162200851 162200955 -398975 + Ricksha DNA DNA 1829 1958 -1288 37 0 0 0 chrX 162200955 162200992 -398938 + AT_rich Low_complexity Low_complexity 1 37 0 715 65 37 0 chrX 162200993 162201100 -398830 - L1MA2 LINE L1 0 6304 6194 2147 144 94 5 chrX 162201112 162201507 -398423 - MSTB1 LTR MaLR -2 430 1 5640 189 39 8 chrX 162201510 162201625 -398305 - L1PB4 LINE L1 -1752 5354 5244 2379 99 0 0 chrX 162201625 162201929 -398001 - AluSx SINE Alu -8 304 1 5640 189 39 8 chrX 162201929 162201955 -397975 - L1PB4 LINE L1 -1862 5244 5220 459 0 0 0 chrX 162201955 162202006 -397924 + (TG)n Simple_repeat Simple_repeat 2 52 0 5640 189 39 8 chrX 162202006 162203282 -396648 - L1PB4 LINE L1 -1886 5220 3893 723 236 11 11 chrX 162203289 162203480 -396450 - L1PB4 LINE L1 -6830 200 10 380 384 35 6 chrX 162203649 162203821 -396109 + MER5B DNA MER1_type 1 177 -1 1109 15 15 0 chrX 162204117 162204250 -395680 + L1PA4 LINE L1 6021 6155 0 21 0 0 0 chrX 162204250 162204271 -395659 + AT_rich Low_complexity Low_complexity 1 21 0 240 360 206 0 chrX 162204717 162204853 -395077 + MIR3 SINE MIR 44 207 -1 1784 161 4 4 chrX 162205563 162205842 -394088 + AluJb SINE Alu 1 279 -33 262 261 188 51 chrX 162206193 162206331 -393599 + MIR3 SINE MIR 22 178 -30 454 282 31 55 chrX 162206410 162206573 -393357 + MIR SINE MIR 20 178 -84 2111 139 73 14 chrX 162206595 162206939 -392991 - THE1B LTR MaLR 0 364 1 10371 81 79 0 chrX 162206939 162208403 -391527 - THE1B-int LTR MaLR 0 1580 1 2168 122 76 15 chrX 162208403 162208746 -391184 - THE1B LTR MaLR 0 364 1 771 143 0 0 chrX 162208930 162209042 -390888 + AluSg/x SINE Alu 183 294 -18 476 222 136 23 chrX 162209218 162209394 -390536 - L2 LINE L2 -6 3307 3112 2344 91 3 0 chrX 162209453 162209751 -390179 + AluSp SINE Alu 1 299 -14 23 0 0 0 chrX 162209788 162209811 -390119 + AT_rich Low_complexity Low_complexity 1 23 0 6350 145 12 9 chrX 162209818 162211733 -388197 - L1MA5A LINE L1 -5 6292 4369 2014 136 41 0 chrX 162211733 162212028 -387902 - AluSg SINE Alu -3 307 1 6350 145 12 9 chrX 162212028 162212040 -387890 - L1MA5A LINE L1 -1928 4369 4359 2774 13 0 0 chrX 162212088 162212392 -387538 + AluYa5 SINE Alu 1 304 -7 431 47 0 16 chrX 162212392 162212451 -387479 - L1PA16 LINE L1 -10 6156 6099 4277 125 15 4 chrX 162212452 162212773 -387157 - L1PA16 LINE L1 -112 6054 5738 2201 129 0 0 chrX 162212773 162213076 -386854 - AluSx SINE Alu -9 303 1 4277 125 15 4 chrX 162213076 162213484 -386446 - L1PA16 LINE L1 -428 5738 5317 5316 94 11 1 chrX 162213478 162214220 -385710 - L1PA11 LINE L1 -2 6172 5424 2603 120 11 0 chrX 162214220 162214680 -385250 + L1PA11 LINE L1 4969 5431 -737 769 189 31 5 chrX 162214687 162214878 -385052 - L1PA11 LINE L1 -847 5299 5104 2458 104 28 6 chrX 162214890 162215246 -384684 - THE1B LTR MaLR 0 364 1 10630 107 8 60 chrX 162215246 162216913 -383017 - THE1B-int LTR MaLR 0 1580 1 2242 145 34 0 chrX 162216913 162217265 -382665 - THE1B LTR MaLR 0 364 1 10197 219 26 31 chrX 162217267 162219286 -380644 - L1 LINE L1 -1052 5094 3066 2149 150 111 5 chrX 162219286 162219673 -380257 + MSTA LTR MaLR 1 428 0 10197 219 26 31 chrX 162219673 162219734 -380196 - L1 LINE L1 -3080 3066 3006 2208 113 3 0 chrX 162219734 162220043 -379887 - AluSx SINE Alu -2 310 1 10197 219 26 31 chrX 162220043 162220674 -379256 - L1 LINE L1 -3140 3006 2396 526 92 40 0 chrX 162220676 162220752 -379178 - MSTB LTR MaLR 0 426 348 1986 128 4 0 chrX 162222470 162222744 -377186 - AluSx SINE Alu -15 297 23 5053 204 70 19 chrX 162222744 162224173 -375757 - L1 LINE L1 -2358 4430 2929 5761 169 12 7 chrX 162224189 162226162 -373768 - L1MA3 LINE L1 -1 7723 5740 1902 30 9 13 chrX 162226163 162226395 -373535 - AluY SINE Alu -12 299 69 7816 198 43 8 chrX 162226395 162228258 -371672 - L1MA3 LINE L1 -2188 5377 3472 613 120 0 34 chrX 162228271 162228388 -371542 + (TTCTCC)n Simple_repeat Simple_repeat 6 118 0 10538 177 36 27 chrX 162228389 162229693 -370237 - L1MA3 LINE L1 -4068 3497 2206 1606 195 0 11 chrX 162229693 162229970 -369960 + AluJo SINE Alu 1 274 -38 10538 177 36 27 chrX 162229970 162231446 -368484 - L1MA3 LINE L1 -5359 2206 16 6177 178 23 46 chrX 162231459 162233260 -366670 - L1 LINE L1 -3849 2939 1150 331 292 77 24 chrX 162233263 162233431 -366499 - L2 LINE L2 -957 2357 2181 192 77 0 0 chrX 162233463 162233489 -366441 + (TG)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chrX 162233715 162233742 -366188 + AT_rich Low_complexity Low_complexity 1 27 0 2330 221 60 44 chrX 162233745 162233939 -365991 - L1ME1 LINE L1 -28 6138 5948 2194 55 0 18 chrX 162233939 162234212 -365718 - AluY SINE Alu -9 302 35 2330 221 60 44 chrX 162234212 162234673 -365257 - L1ME1 LINE L1 -218 5948 5473 262 72 0 145 chrX 162234680 162234749 -365181 + L1MA7 LINE L1 6229 6287 -4 1011 188 55 52 chrX 162235012 162235284 -364646 - L1ME1 LINE L1 -1134 5012 4740 2248 93 0 3 chrX 162235284 162235574 -364356 - AluSc SINE Alu -20 289 1 192 97 0 0 chrX 162235582 162235613 -364317 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 39011 77 6 11 chrX 162235617 162241785 -358145 - L1PA6 LINE L1 -6 6148 11 4237 130 15 2 chrX 162241831 162243090 -356840 + L1PA13 LINE L1 4617 5885 -278 618 245 40 46 chrX 162243097 162243160 -356770 + LTR40b LTR ERVL 20 82 -380 2300 104 3 0 chrX 162243160 162243458 -356472 - AluSp SINE Alu -14 299 1 618 245 40 46 chrX 162243458 162243738 -356192 + LTR40b LTR ERVL 82 462 0 501 291 81 12 chrX 162244066 162244238 -355692 + HERVL40 LTR ERVL 1032 1215 -4315 1547 235 111 6 chrX 162244579 162245076 -354854 + L1M4 LINE L1 3997 4545 -1601 327 271 73 0 chrX 162245086 162245182 -354748 - MLT1E LTR MaLR 0 593 491 234 0 0 0 chrX 162245186 162245212 -354718 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2227 80 0 7 chrX 162245214 162245500 -354430 - AluSx SINE Alu -28 284 1 1092 246 25 50 chrX 162245508 162245566 -354364 - MLT2E LTR ERVL -192 436 378 1299 150 10 62 chrX 162245566 162245872 -354058 + L1MA9 LINE L1 6023 6312 0 1092 246 25 50 chrX 162245872 162246089 -353841 - MLT2E LTR ERVL -250 378 168 947 271 104 46 chrX 162246089 162246640 -353290 + MLT1G1 LTR MaLR 1 551 -4 3972 59 96 16 chrX 162246766 162247326 -352604 + LTR14B LTR ERVK 4 608 0 286 167 167 24 chrX 162247593 162247677 -352253 + MLT1I LTR MaLR 281 376 -33 787 219 71 5 chrX 162247696 162247933 -351997 + L1MC5 LINE L1 6999 7249 -728 1264 190 60 121 chrX 162247937 162248645 -351285 + L1MC5 LINE L1 7238 7827 -134 720 271 4 65 chrX 162248649 162248896 -351034 - L2 LINE L2 -859 2455 2224 1103 283 27 11 chrX 162249011 162249386 -350544 + L1MC4a LINE L1 5519 5899 -1909 217 250 0 0 chrX 162249419 162249463 -350467 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 743 293 57 0 chrX 162249704 162249916 -350014 + MIR SINE MIR 13 236 -26 2265 79 28 3 chrX 162250043 162250333 -349597 - AluSq SINE Alu -16 297 1 753 337 118 18 chrX 162250588 162251030 -348900 - L3 LINE CR1 -7 1570 1085 551 231 105 61 chrX 162251667 162251896 -348034 + L2 LINE L2 2035 2273 -1041 371 305 92 7 chrX 162252164 162252459 -347471 - L1M4 LINE L1 -2382 3764 3445 627 292 21 7 chrX 162252555 162252839 -347091 - L1M4 LINE L1 -3582 2564 2277 1610 222 50 18 chrX 162252846 162253044 -346886 + MER97a DNA MER1_type? 182 372 -522 2772 124 24 2 chrX 162253044 162253463 -346467 + MSTA LTR MaLR 1 428 0 1610 222 50 18 chrX 162253463 162253660 -346270 + MER97a DNA MER1_type? 372 590 -304 5553 99 10 8 chrX 162253660 162254479 -345451 + L1PB3 LINE L1 5335 6154 0 857 204 47 44 chrX 162254489 162254763 -345167 + MER97a DNA MER1_type? 596 870 -24 2897 176 58 11 chrX 162254782 162255316 -344614 - MER21B LTR ERV1 -30 833 275 1254 209 21 86 chrX 162255316 162255369 -344561 - L1ME LINE L1 -353 5813 5758 2167 108 10 0 chrX 162255369 162255664 -344266 - AluSx SINE Alu -14 298 1 1254 209 21 86 chrX 162255664 162255854 -344076 - L1ME LINE L1 -408 5758 5601 2316 112 0 0 chrX 162255854 162256167 -343763 + AluSq SINE Alu 1 313 0 1254 209 21 86 chrX 162256167 162256304 -343626 - L1ME LINE L1 -565 5601 5457 1900 205 101 19 chrX 162256513 162257026 -342904 - L1ME LINE L1 -850 5296 4742 4731 229 81 40 chrX 162257972 162258667 -341263 - L1ME LINE L1 -1350 4796 4131 2169 101 40 0 chrX 162258667 162258993 -340937 - L1MA1 LINE L1 -6 6296 5958 4731 229 81 40 chrX 162258993 162260106 -339824 - L1ME LINE L1 -2015 4131 2914 300 122 0 20 chrX 162260296 162260345 -339585 - L1PB4 LINE L1 -30 6126 6079 825 173 0 0 chrX 162260363 162260490 -339440 - FLAM_C SINE Alu -6 127 1 3129 204 46 1 chrX 162260491 162261237 -338693 - L1ME LINE L1 -3171 2975 2197 1140 330 61 79 chrX 162261694 162262621 -337309 - L2 LINE L2 -50 3222 2280 2469 54 0 32 chrX 162262621 162262936 -336994 + AluY SINE Alu 1 305 -6 7464 12 0 1 chrX 162262936 162263805 -336125 + L1PA3 LINE L1 5307 6155 0 1140 330 61 79 chrX 162263805 162264181 -335749 - L2 LINE L2 -990 2282 1945 466 271 153 31 chrX 162264248 162264477 -335453 + MIR SINE MIR 5 261 -1 218 255 0 0 chrX 162264784 162264835 -335095 - L2 LINE L2 -2885 429 379 201 256 0 0 chrX 162264941 162264980 -334950 + L2 LINE L2 3265 3303 -10 2473 279 90 9 chrX 162265041 162265977 -333953 - L2 LINE L2 -157 3156 1990 548 268 45 83 chrX 162266148 162266461 -333469 + LTR16C LTR ERVL 160 460 -31 594 225 44 12 chrX 162266481 162266641 -333289 - L2 LINE L2 -1323 1991 1827 626 263 189 19 chrX 162266643 162266955 -332975 - L2 LINE L2 -1901 1413 1049 311 281 22 0 chrX 162267047 162267136 -332794 + MER94 DNA DNA 44 134 0 230 254 0 36 chrX 162267172 162267227 -332703 + MIR SINE MIR 13 65 -197 24 85 0 0 chrX 162267996 162268055 -331875 + AT_rich Low_complexity Low_complexity 1 59 0 245 152 0 22 chrX 162268928 162268974 -330956 - MIR SINE MIR -110 152 108 527 315 1 0 chrX 162268994 162269142 -330788 + MIR SINE MIR 2 151 -57 378 202 75 11 chrX 162269147 162269241 -330689 - MER5B DNA MER1_type -6 172 73 262 121 17 17 chrX 162269458 162269516 -330414 + CT-rich Low_complexity Low_complexity 1 58 0 495 277 20 40 chrX 162271717 162271865 -328065 + MIR3 SINE MIR 33 177 -31 183 218 0 73 chrX 162271833 162271888 -328042 + L3 LINE CR1 1519 1569 -8 * 1066 263 22 0 chrX 162272408 162272640 -327290 + MIR SINE MIR 22 258 -4 898 257 0 29 chrX 162274515 162274721 -325209 + MIR3 SINE MIR 5 204 -4 188 182 23 0 chrX 162275244 162275288 -324642 + GA-rich Low_complexity Low_complexity 4 48 0 306 0 0 0 chrX 162277245 162277279 -322651 + (TA)n Simple_repeat Simple_repeat 2 35 0 316 266 0 89 chrX 162278511 162278635 -321295 + MIR3 SINE MIR 64 176 -32 252 0 0 0 chrX 162279930 162279958 -319972 + (GA)n Simple_repeat Simple_repeat 1 28 0 450 331 86 0 chrX 162281070 162281221 -318709 + MIR3 SINE MIR 41 204 -4 22 0 0 0 chrX 162282267 162282289 -317641 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chrX 162282646 162282682 -317248 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 867 195 0 4 chrX 162282801 162283075 -316855 + CT-rich Low_complexity Low_complexity 1 272 0 234 189 19 19 chrX 162283751 162283804 -316126 - L2 LINE L2 0 3313 3261 195 283 81 30 chrX 162283993 162284092 -315838 + MIR SINE MIR 42 145 -63 532 279 68 26 chrX 162284093 162284283 -315647 + MIR3 SINE MIR 2 199 -9 195 246 0 0 chrX 162284409 162284466 -315464 + (TG)n Simple_repeat Simple_repeat 2 58 0 298 204 0 0 chrX 162284563 162284617 -315313 - L2 LINE L2 -3 3310 3257 187 288 15 15 chrX 162284641 162284707 -315223 + MIR SINE MIR 50 115 -147 245 278 261 0 chrX 162284981 162285096 -314834 - L2 LINE L2 0 3272 3128 * 997 227 12 49 chrX 162285090 162285337 -314593 - MIR SINE MIR -24 238 1 2068 163 31 3 chrX 162285398 162285753 -314177 + MLT1A1 LTR MaLR 1 365 0 359 278 74 137 chrX 162285755 162286054 -313876 + L2 LINE L2 2993 3272 0 411 219 9 57 chrX 162286324 162286429 -313501 - MIR3 SINE MIR -94 114 15 3299 109 10 23 chrX 162287350 162287926 -312004 - L1PA16 LINE L1 -84 6082 5448 323 284 3 14 chrX 162288376 162288455 -311475 - MIR SINE MIR -123 85 5 3070 97 16 16 chrX 162288731 162289217 -310713 + L1PA16 LINE L1 5353 5838 -328 1950 159 6 29 chrX 162289688 162290033 -309897 + MER1B DNA MER1_type 1 337 0 448 229 76 17 chrX 162290232 162290350 -309580 + MIR SINE MIR 28 152 -110 273 284 12 25 chrX 162290617 162290698 -309232 - L2 LINE L2 -191 3081 3002 237 203 152 51 chrX 162290930 162291009 -308921 - L2 LINE L2 0 3272 3186 1572 117 164 8 chrX 162291263 162291519 -308411 + AluSg1 SINE Alu 1 296 -13 269 258 15 0 chrX 162292238 162292304 -307626 + MIR SINE MIR 73 139 -69 209 222 0 0 chrX 162292404 162292449 -307481 + L2 LINE L2 3269 3313 0 211 348 0 0 chrX 162292596 162292665 -307265 - L2 LINE L2 -697 2617 2549 451 316 13 32 chrX 162292796 162292951 -306979 - MER5A DNA MER1_type -2 187 36 353 238 12 0 chrX 162293032 162293112 -306818 + L2 LINE L2 2234 2314 -1000 1459 271 35 28 chrX 162293143 162293694 -306236 - L2 LINE L2 -226 3087 2529 718 286 97 4 chrX 162294952 162295179 -304751 - MIR SINE MIR -12 250 3 4515 191 29 15 chrX 162295625 162297509 -302421 + L1MB7 LINE L1 4279 6182 -2 954 256 91 7 chrX 162297585 162298023 -301907 - L1MC/D LINE L1 -886 5405 5283 313 281 77 31 chrX 162298403 162298599 -301331 - HAL1 LINE L1 -1055 1452 1248 558 0 0 0 chrX 162298600 162298662 -301268 + (TTTTA)n Simple_repeat Simple_repeat 3 64 0 393 316 49 84 chrX 162298906 162299372 -300558 + LTR67 LTR ERVL 2 451 -106 1650 271 80 13 chrX 162299380 162299915 -300015 + L2 LINE L2 822 1392 -1922 1833 262 42 62 chrX 162299918 162300152 -299778 + L2 LINE L2 1876 2113 -1201 2689 82 25 0 chrX 162300152 162300519 -299411 - L1PA16 LINE L1 -9 6157 5782 1833 262 42 62 chrX 162300519 162300876 -299054 + L2 LINE L2 2113 2455 -859 1125 335 45 12 chrX 162300876 162301389 -298541 + L2 LINE L2 2770 3301 -12 569 230 223 0 chrX 162302516 162302781 -297149 + MER5C DNA MER1_type 1 324 0 231 337 171 15 chrX 162303212 162303417 -296513 + L3 LINE CR1 1336 1572 -5 529 270 86 0 chrX 162304792 162304955 -294975 - MIR SINE MIR -2 260 84 466 128 108 0 chrX 162306667 162306769 -293161 - L1MB4 LINE L1 -255 5925 5813 350 248 83 33 chrX 162307001 162307122 -292808 - MIR SINE MIR -46 216 90 10822 181 18 2 chrX 162307313 162309542 -290388 - L1PA12 LINE L1 -2701 4883 2618 4809 50 8 7 chrX 162309548 162310574 -289356 - MER11A LTR ERVK 0 1266 1 4076 244 29 43 chrX 162310576 162312160 -287770 - L1PA12 LINE L1 -4960 2624 7 1000 261 38 28 chrX 162312164 162312589 -287341 - L1M4 LINE L1 -775 5371 4943 625 325 66 66 chrX 162312675 162313280 -286650 + L2 LINE L2 2648 3252 -20 400 88 4 0 chrX 162313280 162313338 -286592 + L1PA8A LINE L1 5711 5770 -361 * 3751 230 42 19 chrX 162313337 162315864 -284066 + L1MCa LINE L1 831 3566 -2860 7163 123 50 48 chrX 162315864 162317128 -282802 + Tigger1 DNA MER2_type 1 1266 -1152 436 192 8 8 chrX 162317153 162317273 -282657 + (TA)n Simple_repeat Simple_repeat 1 120 0 15141 161 27 10 chrX 162317284 162318256 -281674 - L1MA3 LINE L1 -11 7713 6759 2949 137 40 4 chrX 162318256 162318752 -281178 - MER75 DNA T2_type 0 514 1 15141 161 27 10 chrX 162318752 162321760 -278170 - L1MA3 LINE L1 -965 6759 3661 37267 80 7 11 chrX 162321763 162327781 -272149 + L1PA6 LINE L1 145 6132 -22 21412 141 30 18 chrX 162327789 162328057 -271873 - L1MA3 LINE L1 -3892 3673 3410 2077 125 7 0 chrX 162328057 162328346 -271584 - AluSx SINE Alu -21 291 1 21412 141 30 18 chrX 162328346 162331686 -268244 - L1MA3 LINE L1 -4155 3410 22 31 26 0 0 chrX 162332168 162332206 -267724 + AT_rich Low_complexity Low_complexity 1 38 0 372 247 172 48 chrX 162332380 162332566 -267364 + L1M4b LINE L1 21 229 -6630 3965 55 2 0 chrX 162332689 162333182 -266748 + L1PA8 LINE L1 5662 6155 -17 2011 112 31 0 chrX 162333419 162333575 -266355 - AluSx SINE Alu -16 296 125 279 0 0 0 chrX 162333575 162333606 -266324 + (TA)n Simple_repeat Simple_repeat 2 32 0 2011 112 31 0 chrX 162333606 162333736 -266194 - AluSx SINE Alu -187 125 1 272 282 0 13 chrX 162333758 162333836 -266094 + L1M4b LINE L1 1111 1187 -5668 764 299 116 8 chrX 162333894 162334429 -265501 + L1M4b LINE L1 1188 1780 -5075 * 20838 153 40 14 chrX 162334421 162337383 -262547 + L1MA2 LINE L1 8 2892 -4831 881 54 0 0 chrX 162337383 162337494 -262436 + L1PA8 LINE L1 6061 6171 -1 20838 153 40 14 chrX 162337494 162341629 -258301 + L1MA2 LINE L1 2892 7288 -435 1834 129 40 20 chrX 162341632 162341981 -257949 + L1MA2 LINE L1 7368 7723 0 1285 252 51 13 chrX 162341992 162342445 -257485 + L1M4b LINE L1 2025 2494 -4644 3185 228 82 14 chrX 162342452 162343674 -256256 + L1M4b LINE L1 2761 4031 -2926 4031 256 45 24 chrX 162343679 162346685 -253245 - L1MCc LINE L1 -2584 4357 1121 20687 18 3 0 chrX 162346756 162349967 -249963 + L1HS LINE L1 2936 6155 0 2768 161 34 9 chrX 162349970 162350499 -249431 - L1MB5 LINE L1 -343 5831 5290 276 152 3 0 chrX 162350527 162350595 -249335 - L1MB5 LINE L1 -840 5306 5238 254 390 15 15 chrX 162350634 162350834 -249096 - L1MCc LINE L1 -5406 1017 818 235 235 0 0 chrX 162351347 162351398 -248532 - L1MCc LINE L1 -6270 153 103 * 913 244 18 25 chrX 162351390 162351673 -248257 - L1M4 LINE L1 -1871 4275 3995 298 325 92 42 chrX 162351953 162352193 -247737 + MLT1K LTR MaLR 179 430 -158 348 244 55 101 chrX 162352292 162352509 -247421 + MLT1J LTR MaLR 110 316 -195 241 235 47 12 chrX 162352656 162352741 -247189 + MLT1K LTR MaLR 501 588 0 276 81 0 0 chrX 162352879 162352916 -247014 - MLT2B1 LTR ERVL 0 520 484 273 29 0 0 chrX 162352920 162352954 -246976 + (CA)n Simple_repeat Simple_repeat 2 35 0 310 157 0 0 chrX 162352973 162353024 -246906 - MIR SINE MIR -36 226 176 261 211 0 0 chrX 162353039 162353096 -246834 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 2106 200 65 0 chrX 162353112 162353527 -246403 - MLT2B1 LTR ERVL -78 442 1 522 222 0 28 chrX 162353528 162353636 -246294 + MIR SINE MIR 142 246 -16 198 0 0 0 chrX 162354309 162354331 -245599 + (TC)n Simple_repeat Simple_repeat 2 23 0 266 125 21 0 chrX 162354340 162354388 -245542 + (TG)n Simple_repeat Simple_repeat 2 50 0 2206 265 89 36 chrX 162354516 162355602 -244328 + L1MEc LINE L1 753 1780 -4435 3597 123 2 17 chrX 162355602 162356137 -243793 + MER1A DNA MER1_type 1 527 0 2206 265 89 36 chrX 162356137 162356483 -243447 + L1MEc LINE L1 1780 2106 -4109 1927 155 7 13 chrX 162356483 162356786 -243144 + AluJo SINE Alu 1 301 -11 2206 265 89 36 chrX 162356786 162357957 -241973 + L1MEc LINE L1 2106 3639 -2576 1363 252 56 9 chrX 162357966 162358411 -241519 + L1M4 LINE L1 4566 5031 -1115 909 145 24 6 chrX 162358407 162358573 -241357 - L1MA4 LINE L1 -262 6038 5870 * 531 176 12 0 chrX 162358596 162358681 -241249 + FLAM_A SINE Alu 34 119 -23 1141 189 20 0 chrX 162358681 162358930 -241000 + L1MA4 LINE L1 6038 6291 -9 3515 119 4 0 chrX 162358938 162359449 -240481 - MER75 DNA T2_type -1 513 1 526 234 57 25 chrX 162359472 162359716 -240214 + L1M4 LINE L1 5022 5273 -873 2850 178 8 0 chrX 162359746 162360257 -239673 - L1PA11 LINE L1 -3507 2639 2125 4439 194 45 2 chrX 162360260 162361213 -238717 + L1PA11 LINE L1 2636 3629 -2517 5833 112 26 1 chrX 162361232 162361669 -238261 + L1PA11 LINE L1 4906 5331 -843 1539 89 106 20 chrX 162361669 162361907 -238023 + L1PA10 LINE L1 5901 6167 -1 5833 112 26 1 chrX 162361907 162362646 -237284 + L1PA11 LINE L1 5331 6106 -68 403 59 0 0 chrX 162362644 162362695 -237235 - L1PA8 LINE L1 -112 6060 6010 * 1142 313 54 41 chrX 162362700 162363185 -236745 + MLT1K LTR MaLR 92 582 -6 3233 214 94 52 chrX 162364208 162364514 -235416 + L1MDa LINE L1 1007 1299 -5241 2095 106 0 27 chrX 162364514 162364815 -235115 + AluSc SINE Alu 1 293 -16 2687 82 6 0 chrX 162364815 162365181 -234749 + L1PA13 LINE L1 5796 6163 0 3233 214 94 52 chrX 162365181 162366110 -233820 + L1MDa LINE L1 1298 2295 -4245 1006 304 132 25 chrX 162366188 162366914 -233016 + L2 LINE L2 1492 2295 -1019 5911 125 29 2 chrX 162366923 162367852 -232078 - Tigger1 DNA MER2_type 0 2418 1465 1221 197 0 5 chrX 162367852 162368055 -231875 + AluJb SINE Alu 87 288 -24 9345 130 14 11 chrX 162368113 162369123 -230807 - Tigger1 DNA MER2_type -961 1457 440 2107 123 5 59 chrX 162369123 162369498 -230432 - THE1A LTR MaLR 0 355 1 9345 130 14 11 chrX 162369498 162369940 -229990 - Tigger1 DNA MER2_type -1978 440 1 331 325 80 101 chrX 162369941 162370396 -229534 + L2 LINE L2 2304 2767 -546 414 0 0 0 chrX 162370396 162370442 -229488 + (CA)n Simple_repeat Simple_repeat 2 47 0 331 325 80 101 chrX 162370442 162370943 -228987 + L2 LINE L2 2767 3239 -74 1691 175 29 63 chrX 162370946 162371324 -228606 + MLT1A1 LTR MaLR 1 365 0 27 0 0 0 chrX 162371357 162371384 -228546 + AT_rich Low_complexity Low_complexity 1 27 0 1833 83 0 0 chrX 162371388 162371630 -228300 - L1PA6 LINE L1 -10 6144 5903 302 67 22 0 chrX 162371647 162371692 -228238 + L2 LINE L2 3264 3309 -4 1122 157 170 62 chrX 162373668 162373992 -225938 + MLT1A1 LTR MaLR 3 361 -4 415 261 97 67 chrX 162374031 162374196 -225734 - MIR3 SINE MIR -5 203 34 191 407 93 25 chrX 162374370 162374692 -225238 + L3 LINE CR1 32 375 -1202 563 333 117 63 chrX 162375373 162376067 -223863 + L3 LINE CR1 371 1101 -476 435 281 15 44 chrX 162376081 162376216 -223714 + L3 LINE CR1 1375 1505 -72 7665 27 0 0 chrX 162377362 162378382 -221548 - L1PA3 LINE L1 -2 6153 5134 4353 38 0 0 chrX 162378382 162378914 -221016 + L1PA3 LINE L1 4594 5125 -1021 300 102 0 0 chrX 162378977 162379026 -220904 + (CATA)n Simple_repeat Simple_repeat 2 50 0 228 237 207 46 chrX 162379750 162379908 -220022 + MIR SINE MIR 51 220 -42 26 64 0 0 chrX 162379929 162379976 -219954 + AT_rich Low_complexity Low_complexity 1 47 0 413 301 35 28 chrX 162379983 162380126 -219804 - MIR3 SINE MIR -49 159 16 735 268 58 21 chrX 162380368 162380611 -219319 + MIR SINE MIR 11 262 0 423 283 14 7 chrX 162380811 162380956 -218974 - L1M4 LINE L1 -2161 3985 3840 23 0 0 0 chrX 162381273 162381296 -218634 + AT_rich Low_complexity Low_complexity 1 23 0 2751 229 66 18 chrX 162381997 162382946 -216984 - L1ME3 LINE L1 0 6162 5164 2025 314 100 51 chrX 162382952 162384648 -215282 + L2 LINE L2 1340 3121 -192 961 267 80 79 chrX 162384966 162386383 -213547 - L1ME3A LINE L1 -256 5914 4490 923 78 0 8 chrX 162386496 162386624 -213306 + L1MA2 LINE L1 6178 6304 0 893 234 22 5 chrX 162386793 162386977 -212953 - MER5A DNA MER1_type -1 188 2 248 254 66 16 chrX 162387174 162387296 -212634 - HAL1b LINE L1 -531 817 690 216 0 0 0 chrX 162387884 162387908 -212022 + (T)n Simple_repeat Simple_repeat 1 24 0 418 247 22 0 chrX 162388032 162388121 -211809 + L1PA15-16 LINE L1 1461 1551 -5298 11315 229 23 14 chrX 162388129 162391146 -208784 + L1PA15-16 LINE L1 1348 4469 -2380 2289 78 0 3 chrX 162391146 162391501 -208429 + AluY SINE Alu 1 354 0 11315 229 23 14 chrX 162391501 162392521 -207409 + L1PA15-16 LINE L1 4469 5478 -1371 11904 121 17 51 chrX 162392527 162394869 -205061 + L1PB4 LINE L1 5 2348 -4113 5526 138 33 9 chrX 162394863 162395856 -204074 + L1PB4 LINE L1 5077 6117 -354 * 378 0 0 0 chrX 162395856 162395898 -204032 + (CA)n Simple_repeat Simple_repeat 2 43 0 5526 138 33 9 chrX 162395898 162396255 -203675 + L1PB4 LINE L1 6117 6464 -7 449 220 73 23 chrX 162396258 162396435 -203495 + L1MDa LINE L1 2465 2650 -3890 1289 246 64 15 chrX 162396439 162396768 -203162 + MER21B LTR ERV1 508 852 -11 4632 177 38 39 chrX 162396781 162398354 -201576 + L1MA2 LINE L1 4600 6167 -137 2237 111 124 21 chrX 162398354 162398740 -201190 + MSTA LTR MaLR 1 426 -2 4632 177 38 39 chrX 162398740 162398878 -201052 + L1MA2 LINE L1 6167 6304 0 1704 200 91 18 chrX 162398889 162399226 -200704 + L1M1 LINE L1 5106 5417 -885 1848 143 61 0 chrX 162399226 162399506 -200424 + AluSx SINE Alu 1 297 -15 1704 200 91 18 chrX 162399506 162399764 -200166 + L1M1 LINE L1 5417 5733 -569 475 297 0 0 chrX 162399962 162400107 -199823 + L1MDa LINE L1 2996 3140 -3400 11211 89 10 1 chrX 162400261 162401837 -198093 - L1PA7 LINE L1 -1442 4704 3115 6833 60 10 0 chrX 162401837 162403276 -196654 + L1PA7 LINE L1 4705 6153 -1 770 220 16 0 chrX 162403304 162403495 -196435 + L1 LINE L1 2423 2616 -3530 4965 199 22 23 chrX 162403507 162404659 -195271 + L1 LINE L1 3869 5019 -1127 9936 180 26 7 chrX 162404668 162406404 -193526 + L1MA10 LINE L1 13 1782 -5783 7333 214 59 5 chrX 162406402 162408494 -191436 + L1MA10 LINE L1 2849 5160 -2405 * 5290 56 39 0 chrX 162408494 162409189 -190741 + LTR30 LTR ERV1 1 722 0 7333 214 59 5 chrX 162409189 162410097 -189833 + L1MA10 LINE L1 5160 6018 -1547 496 136 11 34 chrX 162410097 162410185 -189745 + Tigger2 DNA MER2_type 677 762 -1956 1457 148 33 0 chrX 162410238 162410481 -189449 + Tigger2 DNA MER2_type 2468 2718 0 3988 148 30 0 chrX 162410481 162411158 -188772 + L1MA10 LINE L1 6686 7382 -226 1049 140 22 53 chrX 162411170 162411398 -188532 + L1MA10 LINE L1 7530 7750 -3 1125 301 106 14 chrX 162411399 162411835 -188095 - LTR33 LTR ERVL -44 477 2 497 284 139 26 chrX 162411835 162412187 -187743 + L1ME LINE L1 4514 4905 -1241 276 30 0 0 chrX 162412207 162412240 -187690 + (TA)n Simple_repeat Simple_repeat 2 34 0 716 172 0 0 chrX 162412245 162412361 -187569 - FLAM_C SINE Alu -27 116 1 301 228 23 122 chrX 162412413 162412645 -187285 + L1ME LINE L1 5341 5556 -606 1501 188 186 16 chrX 162412647 162413083 -186847 - LTR50 LTR ERVL 0 795 286 457 241 99 7 chrX 162413089 162413230 -186700 - LTR50 LTR ERVL -641 154 1 31 0 0 24 chrX 162413314 162413331 -186599 + AT_rich Low_complexity Low_complexity 1 17 -24 2696 16 0 13 chrX 162413331 162413649 -186281 - L1PA3 LINE L1 0 6155 5842 31 0 0 24 chrX 162413649 162413673 -186257 + AT_rich Low_complexity Low_complexity 17 41 0 310 119 15 15 chrX 162413904 162413971 -185959 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1365 280 45 22 chrX 162414021 162414543 -185387 - ERVL LTR ERVL -343 5311 4746 371 255 20 0 chrX 162414589 162414687 -185243 - ERVL LTR ERVL -1041 4613 4514 2701 62 3 0 chrX 162414691 162415069 -184861 - L1PA7 LINE L1 -542 5612 5235 * 4307 64 2 0 chrX 162415068 162415613 -184317 + L1PA7 LINE L1 5585 6130 -24 248 69 35 35 chrX 162415625 162415683 -184247 + (TA)n Simple_repeat Simple_repeat 1 58 0 1623 95 9 0 chrX 162415687 162415909 -184021 + MER41-int LTR ERV1 5032 5255 -691 1141 314 37 0 chrX 162415936 162416289 -183641 - ERVL LTR ERVL -1078 4686 4321 1571 80 10 0 chrX 162416433 162416633 -183297 - AluSc SINE Alu -16 293 92 1712 284 35 8 chrX 162416633 162417122 -182808 - ERVL LTR ERVL -3462 2302 1801 1119 45 0 0 chrX 162417134 162417266 -182664 - AluY SINE Alu -179 132 1 1551 306 32 37 chrX 162417267 162417670 -182260 - ERVL LTR ERVL -3952 1812 1408 1824 246 71 15 chrX 162417670 162418190 -181740 + MLT1H LTR MaLR 1 549 0 1551 306 32 37 chrX 162418190 162418266 -181664 - ERVL LTR ERVL -4356 1408 1333 438 20 0 0 chrX 162418266 162418317 -181613 + (TG)n Simple_repeat Simple_repeat 1 51 0 1551 306 32 37 chrX 162418317 162418557 -181373 - ERVL LTR ERVL -4431 1333 1096 1345 96 0 0 chrX 162418558 162418756 -181174 + L1MA2 LINE L1 6107 6304 0 3382 240 32 22 chrX 162418758 162418890 -181040 + L1M1 LINE L1 2292 2421 -5144 4368 124 13 8 chrX 162418890 162419598 -180332 + L1PA16 LINE L1 5456 6166 0 3382 240 32 22 chrX 162419598 162420529 -179401 + L1M1 LINE L1 2421 3366 -4199 1846 132 105 93 chrX 162420537 162420787 -179143 + L1MA8 LINE L1 5023 5269 -1022 6000 43 14 0 chrX 162420787 162421523 -178407 + L1PA5 LINE L1 5409 6154 0 1846 132 105 93 chrX 162421523 162421852 -178078 + L1MA8 LINE L1 5269 5608 -683 1724 87 48 1 chrX 162421850 162422240 -177690 - L1PA10 LINE L1 -622 5509 5108 * 4812 75 17 6 chrX 162422240 162422889 -177041 + L1PA10 LINE L1 5511 6167 -1 3306 131 38 56 chrX 162422889 162423593 -176337 + L1MA8 LINE L1 5593 6289 -2 3599 192 60 5 chrX 162423782 162424942 -174988 + L1MB8 LINE L1 4942 6178 0 737 188 180 19 chrX 162424953 162425321 -174609 + L1MC5 LINE L1 7408 7913 -48 591 97 29 0 chrX 162425322 162425425 -174505 + L1MA7 LINE L1 6186 6291 0 343 257 138 9 chrX 162425610 162425719 -174211 + L2 LINE L2 3190 3312 -1 546 82 33 25 chrX 162425960 162426082 -173848 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 616 254 22 0 chrX 162426537 162426675 -173255 - MIR SINE MIR -48 214 74 234 188 10 188 chrX 162426998 162427099 -172831 + MIR3 SINE MIR 123 205 -3 181 214 18 54 chrX 162429083 162429139 -170791 - MIR SINE MIR -189 73 20 312 324 21 21 chrX 162429536 162429678 -170252 + LTR67 LTR ERVL 338 479 -78 235 227 21 85 chrX 162429681 162429700 -170230 - L1MA9 LINE L1 0 6312 6294 2527 191 30 129 chrX 162429700 162431047 -168883 - L1ME2 LINE L1 -9 6155 4942 5015 209 30 17 chrX 162431104 162432692 -167238 + L1MD2 LINE L1 4747 6359 0 462 215 108 25 chrX 162432696 162432854 -167076 - L1ME2 LINE L1 -1296 4850 4680 451 381 26 13 chrX 162432901 162433208 -166722 - L1MEc LINE L1 -6028 368 58 442 164 0 0 chrX 162433212 162433285 -166645 + LTR67 LTR ERVL 485 557 0 267 260 164 0 chrX 162433698 162433771 -166159 - MER81 DNA DNA -14 100 16 489 267 103 76 chrX 162433896 162434158 -165772 + LTR16B LTR ERVL 1 269 -195 537 0 41 0 chrX 162434369 162434442 -165488 + (GA)n Simple_repeat Simple_repeat 1 76 0 252 234 39 13 chrX 162434606 162434683 -165247 + MLT1K LTR MaLR 509 587 -1 208 289 0 0 chrX 162435242 162435287 -164643 - L2 LINE L2 -692 2622 2578 951 241 0 14 chrX 162435287 162435499 -164431 + MER58A DNA MER1_type 1 209 -15 27 62 0 0 chrX 162435808 162435856 -164074 + AT_rich Low_complexity Low_complexity 1 48 0 808 251 114 5 chrX 162435868 162436079 -163851 + MIR SINE MIR 29 262 0 259 370 0 0 chrX 162436217 162436309 -163621 + L2 LINE L2 2919 3010 -262 532 229 9 18 chrX 162436319 162436428 -163502 + L2 LINE L2 3165 3272 0 551 298 45 98 chrX 162436534 162436893 -163037 - L2 LINE L2 -9 3263 2924 236 309 66 7 chrX 162438099 162438235 -161695 + MIR3 SINE MIR 58 201 -7 214 274 95 0 chrX 162439626 162439721 -160209 - L2 LINE L2 -886 2428 2325 27 29 0 0 chrX 162439851 162439885 -160045 + AT_rich Low_complexity Low_complexity 1 34 0 3479 173 108 33 chrX 162440062 162440983 -158947 - L1MB7 LINE L1 -27 6859 5865 9682 194 37 11 chrX 162440983 162443897 -156033 - L1PA15 LINE L1 0 7603 4617 5097 235 66 21 chrX 162443900 162445309 -154621 - L1PA15 LINE L1 -3127 4457 2985 4838 246 19 22 chrX 162445291 162446608 -153322 - L1PA15 LINE L1 -4826 2755 1539 * 5228 211 43 47 chrX 162446609 162447131 -152799 - L1MB7 LINE L1 -986 5862 5340 583 36 0 24 chrX 162447131 162447215 -152715 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 1656 178 11 14 chrX 162447215 162447496 -152434 - AluJo SINE Alu -32 280 1 5228 211 43 47 chrX 162447496 162448521 -151409 - L1MB7 LINE L1 -1506 5342 4319 1561 242 70 51 chrX 162448517 162449518 -150412 - L1MB7 LINE L1 -3675 3173 2169 * 551 337 70 23 chrX 162449592 162449978 -149952 - L1MB7 LINE L1 -5654 1092 689 405 105 0 0 chrX 162449994 162450051 -149879 - L1MB7 LINE L1 -6783 66 10 2371 220 124 7 chrX 162450059 162450731 -149199 - MER20B DNA MER1_type -24 759 10 481 276 138 19 chrX 162450867 162451294 -148636 - L1MEc LINE L1 -2082 4300 3823 1196 153 11 0 chrX 162451308 162451497 -148433 - Tigger2 DNA MER2_type 0 2718 2528 4103 117 9 27 chrX 162451505 162451835 -148095 - Tigger2 DNA MER2_type -315 2403 2089 4111 25 0 0 chrX 162451835 162452311 -147619 - L1PA4 LINE L1 -8 6147 5672 4103 117 9 27 chrX 162452311 162452640 -147290 - Tigger2 DNA MER2_type -629 2089 1756 1107 138 133 9 chrX 162452678 162452888 -147042 - MER46A DNA MER2_type 0 236 1 3052 42 10 3 chrX 162452924 162453307 -146623 - L1P2 LINE L1 -391 5764 5379 3008 26 0 0 chrX 162453307 162453654 -146276 + L1PA4 LINE L1 5800 6147 -8 251 270 16 16 chrX 162453888 162453951 -145979 + L3 LINE CR1 322 384 -1193 10788 135 24 11 chrX 162453964 162455701 -144229 - Tigger2 DNA MER2_type -959 1759 1 7715 236 22 41 chrX 162455704 162458204 -141726 - L1M4 LINE L1 -4170 2180 -319 3892 155 24 11 chrX 162458204 162458909 -141021 - L1MA8 LINE L1 -132 6159 -195 2106 238 78 47 chrX 162458909 162460224 -139706 - L1MEc LINE L1 -3171 3211 1898 731 241 56 9 chrX 162460399 162460631 -139299 - L1MEc LINE L1 -4551 1833 1591 * 5742 133 30 19 chrX 162460624 162461093 -138837 - L1MA4A LINE L1 0 6303 5840 2252 93 7 7 chrX 162461093 162461394 -138536 - AluSx SINE Alu -11 301 1 5742 133 30 19 chrX 162461394 162462035 -137895 - L1MA4A LINE L1 -463 5840 5182 1459 234 42 22 chrX 162462140 162462686 -137244 + L1M4 LINE L1 2664 3220 -2926 4050 256 45 24 chrX 162462691 162465697 -134233 - L1MCc LINE L1 -2584 4357 1121 20586 20 0 0 chrX 162465768 162468988 -130942 + L1HS LINE L1 2936 6155 0 243 0 0 0 chrX 162469022 162469049 -130881 + (A)n Simple_repeat Simple_repeat 1 27 0 2709 170 37 19 chrX 162469049 162469672 -130258 - L1MB5 LINE L1 -343 5831 5238 254 390 15 15 chrX 162469710 162469910 -130020 - L1MCc LINE L1 -5406 1017 818 235 235 0 0 chrX 162470423 162470474 -129456 - L1MCc LINE L1 -6270 153 103 * 913 244 18 25 chrX 162470466 162470749 -129181 - L1MB5 LINE L1 -1871 4275 3995 298 325 92 42 chrX 162471029 162471269 -128661 + MLT1K LTR MaLR 179 430 -158 348 244 55 101 chrX 162471368 162471585 -128345 + MLT1J LTR MaLR 110 316 -195 251 224 47 12 chrX 162471732 162471817 -128113 + MLT1K LTR MaLR 501 588 0 276 81 0 0 chrX 162471955 162471992 -127938 - MLT2D LTR ERVL 0 414 378 273 29 0 0 chrX 162471996 162472030 -127900 + (CA)n Simple_repeat Simple_repeat 2 35 0 310 157 0 0 chrX 162472049 162472100 -127830 - MIR SINE MIR -36 226 176 249 33 0 0 chrX 162472115 162472145 -127785 + (TA)n Simple_repeat Simple_repeat 2 31 0 * 276 30 0 0 chrX 162472144 162472177 -127753 + (TG)n Simple_repeat Simple_repeat 2 34 0 2106 200 65 0 chrX 162472196 162472611 -127319 - MLT2B1 LTR ERVL -78 442 1 522 222 0 28 chrX 162472612 162472720 -127210 + MIR SINE MIR 142 246 -16 198 0 0 0 chrX 162473393 162473415 -126515 + (TC)n Simple_repeat Simple_repeat 2 23 0 186 43 0 0 chrX 162473416 162473439 -126491 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 245 29 29 0 chrX 162473438 162473472 -126458 + (TG)n Simple_repeat Simple_repeat 2 36 0 2206 268 88 36 chrX 162473600 162474686 -125244 + L1MEc LINE L1 753 1781 -4434 3597 123 2 17 chrX 162474686 162475221 -124709 + MER1A DNA MER1_type 1 527 0 2206 268 88 36 chrX 162475221 162475567 -124363 + L1MEc LINE L1 1781 2107 -4108 1911 158 7 13 chrX 162475567 162475870 -124060 + AluJo SINE Alu 1 301 -11 2206 268 88 36 chrX 162475870 162477049 -122881 + L1MEc LINE L1 2107 3648 -2567 1333 251 56 11 chrX 162477050 162477496 -122434 + L1M4 LINE L1 4566 5031 -1115 554 147 35 9 chrX 162477492 162477608 -122322 - L1MA4 LINE L1 -262 6038 5920 * 1160 67 0 30 chrX 162477641 162477805 -122125 + L1PA10 LINE L1 6009 6167 -1 5280 95 14 1 chrX 162477805 162478544 -121386 + L1PA11 LINE L1 5359 6106 -68 403 59 0 0 chrX 162478542 162478593 -121337 - L1PA8 LINE L1 -112 6060 6010 * 1142 313 54 41 chrX 162478598 162479083 -120847 + MLT1K LTR MaLR 92 582 -6 3189 215 95 52 chrX 162480106 162480412 -119518 + L1MDa LINE L1 1007 1299 -5241 2074 103 0 27 chrX 162480412 162480712 -119218 + AluSc SINE Alu 1 292 -17 2726 82 3 0 chrX 162480712 162481079 -118851 + L1PA13 LINE L1 5796 6163 0 3189 215 95 52 chrX 162481079 162482008 -117922 + L1MDa LINE L1 1298 2295 -4245 1037 303 131 25 chrX 162482086 162482813 -117117 + L2 LINE L2 1492 2295 -1019 5911 125 29 2 chrX 162482822 162483751 -116179 - Tigger1 DNA MER2_type 0 2418 1465 1221 197 0 5 chrX 162483751 162483954 -115976 + AluJb SINE Alu 87 288 -24 6677 128 7 2 chrX 162484012 162485022 -114908 - Tigger1 DNA MER2_type -961 1457 443 1164 104 0 99 chrX 162485022 162485244 -114686 - THE1A LTR MaLR 0 355 156 266 221 132 15 chrX 162486250 162486318 -113612 + MER69 DNA AcHobo 1 76 -2450 1459 101 14 14 chrX 162486394 162486613 -113317 - HERVK14 LTR ERVK -5726 219 1 4394 50 43 33 chrX 162486613 162487212 -112718 - LTR14B LTR ERVK 0 608 4 596 240 125 42 chrX 162487338 162487771 -112159 - MLT1G3 LTR MaLR -4 551 126 13111 189 25 33 chrX 162487872 162490179 -109751 - L1 LINE L1 -939 5909 3584 2347 77 3 10 chrX 162490179 162490479 -109451 - AluSp SINE Alu -15 298 1 13111 189 25 33 chrX 162490479 162490967 -108963 - L1 LINE L1 -3264 3584 3093 372 22 0 0 chrX 162490967 162491012 -108918 + (TG)n Simple_repeat Simple_repeat 2 46 0 13111 189 25 33 chrX 162491012 162492436 -107494 - L1 LINE L1 -3755 3093 1710 2518 154 32 0 chrX 162492454 162492889 -107041 - L1PB4 LINE L1 -2 6154 5706 1083 61 92 49 chrX 162492889 162493052 -106878 + THE1B LTR MaLR 1 170 -194 7280 49 4 0 chrX 162493082 162494564 -105366 - L1PA5 LINE L1 0 6154 4670 206 204 38 75 chrX 162597590 162597776 -2154 + (TTAAG)n Simple_repeat Simple_repeat 2 180 0 270 118 50 84 chrX 162598029 162598148 -1782 + (TTAAG)n Simple_repeat Simple_repeat 4 118 0 271 174 32 84 chrX 162598866 162599021 -909 + (TTAAG)n Simple_repeat Simple_repeat 2 148 0